BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|255764460|ref|YP_003064605.2| recombinase A [Candidatus
Liberibacter asiaticus str. psy62]
         (363 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done


Results from round 1


>gi|255764460|ref|YP_003064605.2| recombinase A [Candidatus Liberibacter asiaticus str. psy62]
 gi|254547811|gb|ACT56665.2| recombinase A [Candidatus Liberibacter asiaticus str. psy62]
          Length = 363

 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/363 (100%), Positives = 363/363 (100%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG
Sbjct: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK
Sbjct: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS
Sbjct: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK
Sbjct: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS
Sbjct: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD
Sbjct: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360

Query: 361 NVE 363
           NVE
Sbjct: 361 NVE 363


>gi|315122763|ref|YP_004063252.1| recombinase A [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313496165|gb|ADR52764.1| recombinase A [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 348

 Score =  637 bits (1643), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/346 (88%), Positives = 335/346 (96%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL+AALSQI+R+YGKG+IMQLGSQ SI EG+EVVSSGSLGLDIALGIGGFPKGRI
Sbjct: 1   MDKSKALDAALSQIERLYGKGSIMQLGSQSSISEGVEVVSSGSLGLDIALGIGGFPKGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH IAQSQK GGTCAFVDAEHALDS+YARKLGVDLKNLLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALHAIAQSQKAGGTCAFVDAEHALDSVYARKLGVDLKNLLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITDMLVRSGAVDIIV+DSVAALTPRAEIEGDMGESLPG+QARLMSQALRKLT S
Sbjct: 121 GEQALEITDMLVRSGAVDIIVVDSVAALTPRAEIEGDMGESLPGLQARLMSQALRKLTGS 180

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ISRS CIL+FINQ+RMKIGVMFGSPETTTGGNALKFY+S+RLDIRR+G+IK+KD+I GNQ
Sbjct: 181 ISRSNCILIFINQIRMKIGVMFGSPETTTGGNALKFYASIRLDIRRIGAIKEKDAIVGNQ 240

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMASPFKQVEFDIMYGEGIS  GELIDLGVKASIVDKSGAWFS+KGQRLGQG
Sbjct: 241 TRVKVVKNKMASPFKQVEFDIMYGEGISRVGELIDLGVKASIVDKSGAWFSYKGQRLGQG 300

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           REN+K+FLR+N+E+A +I++LLRQNAGLV+D LLQEPAINT+DDA+
Sbjct: 301 RENAKVFLRDNVEVASDIDNLLRQNAGLVSDILLQEPAINTRDDAN 346


>gi|163759602|ref|ZP_02166687.1| recombinase A [Hoeflea phototrophica DFL-43]
 gi|162283199|gb|EDQ33485.1| recombinase A [Hoeflea phototrophica DFL-43]
          Length = 360

 Score =  561 bits (1447), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 269/345 (77%), Positives = 312/345 (90%), Gaps = 1/345 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+  S+ E IE + +GSLGLDIALG+GG PKGRI
Sbjct: 14  VDKSKALDAALSQIERSFGKGSIMKLGANESVVE-IETIPTGSLGLDIALGVGGLPKGRI 72

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG C F+DAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 73  IEIYGPESSGKTTLALQTIAEAQKKGGICGFIDAEHALDPVYARKLGVDLENLLISQPDT 132

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 133 GEQALEITDTLVRSGALDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 192

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K++D +TGNQ
Sbjct: 193 ISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKERDEVTGNQ 252

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GELIDLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 253 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELIDLGVKAGIVEKSGAWFSYNSQRLGQG 312

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           RENSK FLR+N  +AE IE LLRQNAGL+A+  L+E   + +DDA
Sbjct: 313 RENSKQFLRDNPAVAEEIELLLRQNAGLIAEKFLEEDRSSGEDDA 357


>gi|90420927|ref|ZP_01228832.1| RecA [Aurantimonas manganoxydans SI85-9A1]
 gi|90334902|gb|EAS48674.1| RecA [Aurantimonas manganoxydans SI85-9A1]
          Length = 357

 Score =  561 bits (1446), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 268/349 (76%), Positives = 313/349 (89%), Gaps = 1/349 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N +DK+KAL+AALSQI+R +GKG+IM+LG    I E IE VS+GSLGLDIALGIGG P
Sbjct: 10  EDNSLDKNKALDAALSQIERAFGKGSIMRLGENEKIVE-IETVSTGSLGLDIALGIGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR+VE+YGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRVVEVYGPESSGKTTLALHTIAEAQKKGGVCAFVDAEHALDPVYARKLGVDLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPGMQARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SISRSKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D +
Sbjct: 189 LTGSISRSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           TGNQT+VKVVKNK+A PFKQVEFDIMYGEG+S  GEL+DLGVK+ IV+KSGAWFS+  QR
Sbjct: 249 TGNQTKVKVVKNKLAPPFKQVEFDIMYGEGVSKTGELVDLGVKSGIVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           LGQGREN+K FLR+N  +A+ IE+L+RQNAGL+A+ LL +       DA
Sbjct: 309 LGQGRENAKSFLRDNPAVADEIETLIRQNAGLLAEQLLDDTGPGDDSDA 357


>gi|86357938|ref|YP_469830.1| recombinase A [Rhizobium etli CFN 42]
 gi|123751994|sp|Q2K7T3|RECA_RHIEC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|86282040|gb|ABC91103.1| recombinase A protein [Rhizobium etli CFN 42]
          Length = 362

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 268/335 (80%), Positives = 306/335 (91%), Gaps = 1/335 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSLGLDIALGIGG PKGRI
Sbjct: 14  VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLGLDIALGIGGLPKGRI 72

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 73  IEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 132

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPGMQARLMSQALRKLT+S
Sbjct: 133 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 192

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ
Sbjct: 193 ISKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQ 252

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 253 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 312

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
           REN+K FLR+N ++A  IE  LRQNAGL+AD  LQ
Sbjct: 313 RENAKTFLRDNPDLAREIELALRQNAGLIADRFLQ 347


>gi|114707287|ref|ZP_01440184.1| recombinase A [Fulvimarina pelagi HTCC2506]
 gi|114537168|gb|EAU40295.1| recombinase A [Fulvimarina pelagi HTCC2506]
          Length = 357

 Score =  558 bits (1439), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 266/342 (77%), Positives = 310/342 (90%), Gaps = 1/342 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG      E +E VS+GSLGLDIALGIGG P
Sbjct: 10  EDNSVDKTKALDAALSQIERAFGKGSIMKLGQNNQSVE-VETVSTGSLGLDIALGIGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR++EIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD IYARKLGVDL+NLL+S
Sbjct: 69  KGRVIEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPIYARKLGVDLENLLVS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPGMQARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SISRSKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIKD+D +
Sbjct: 189 LTGSISRSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKDRDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           TGNQT+VKVVKNK+A PFKQVEFDIMYGEG+S  GELIDLGVK+ IV+KSGAWFS+  QR
Sbjct: 249 TGNQTKVKVVKNKLAPPFKQVEFDIMYGEGVSKMGELIDLGVKSGIVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           LGQGREN+K FLR+N + A+ IE  +RQNAG++A+ LL++ A
Sbjct: 309 LGQGRENAKQFLRDNPDAAQEIEQSIRQNAGILAEKLLEDGA 350


>gi|90818648|emb|CAJ32629.1| recombinase A [Ochrobactrum anthropi]
          Length = 355

 Score =  558 bits (1439), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 263/340 (77%), Positives = 309/340 (90%), Gaps = 1/340 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG P
Sbjct: 10  EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDKVVE-IETVSTGSLSLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 189 LTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           LGQGREN+K++L+EN E+A  IE+ LRQNAGL+A+ LL++
Sbjct: 309 LGQGRENAKLYLKENPEVAREIETTLRQNAGLIAEQLLED 348


>gi|222148885|ref|YP_002549842.1| recombinase A [Agrobacterium vitis S4]
 gi|254790418|sp|B9JX56|RECA_AGRVS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|221735871|gb|ACM36834.1| RecA protein [Agrobacterium vitis S4]
          Length = 362

 Score =  558 bits (1438), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 269/353 (76%), Positives = 310/353 (87%), Gaps = 1/353 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LG+   I E +E VS+GSL LDIALGIGG P
Sbjct: 10  EDKTVDKSKALEAALSQIERSFGKGSIMKLGANEKIVE-VETVSTGSLSLDIALGIGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRIIEIYGPESSGKTTLALQTIAEAQKKGGVCAFVDAEHALDPVYARKLGVDLQNLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++VIDSVAALTP+AEIEG+MG+SLPGMQARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPKAEIEGEMGDSLPGMQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SISRS C++VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++KD++ I
Sbjct: 189 LTGSISRSNCMVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKDREEI 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+K+GAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKAGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           LGQGREN+KIFLR+N  +A+ IE+ LRQNAGL+A+  L+    +  D    DD
Sbjct: 309 LGQGRENAKIFLRDNPAVADEIETALRQNAGLIAERFLENGGPDANDSVGLDD 361


>gi|195970165|ref|NP_385905.2| recombinase A [Sinorhizobium meliloti 1021]
 gi|307302672|ref|ZP_07582428.1| recA protein [Sinorhizobium meliloti BL225C]
 gi|307318520|ref|ZP_07597954.1| recA protein [Sinorhizobium meliloti AK83]
 gi|187904183|emb|CAC46378.2| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti 1021]
 gi|306895860|gb|EFN26612.1| recA protein [Sinorhizobium meliloti AK83]
 gi|306903036|gb|EFN33627.1| recA protein [Sinorhizobium meliloti BL225C]
          Length = 361

 Score =  558 bits (1437), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 270/349 (77%), Positives = 312/349 (89%), Gaps = 5/349 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI
Sbjct: 14  VDKSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRI 72

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 73  IEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDT 132

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S
Sbjct: 133 GEQALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 192

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ
Sbjct: 193 ISKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQ 252

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GELIDLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 253 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELIDLGVKAGIVEKSGAWFSYNSQRLGQG 312

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           REN+K+FLREN E+   IE+ LRQNAGL+AD  L+    N   ++D D+
Sbjct: 313 RENAKLFLRENPELLREIETALRQNAGLIADRFLE----NGGPESDGDE 357


>gi|150396733|ref|YP_001327200.1| recombinase A [Sinorhizobium medicae WSM419]
 gi|166220683|sp|A6U9N5|RECA_SINMW RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|150028248|gb|ABR60365.1| recA protein [Sinorhizobium medicae WSM419]
          Length = 361

 Score =  558 bits (1437), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 268/348 (77%), Positives = 310/348 (89%), Gaps = 1/348 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI
Sbjct: 14  VDKSKALEAALSQIERAFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRI 72

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDT
Sbjct: 73  VEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDT 132

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S
Sbjct: 133 GEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 192

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ
Sbjct: 193 ISKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQ 252

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GELIDLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 253 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELIDLGVKAGIVEKSGAWFSYNSQRLGQG 312

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           REN+K+FLR+N E+   IE+ LRQNAGL+AD  L+     ++ D   D
Sbjct: 313 RENAKLFLRDNPELLREIETALRQNAGLIADRFLENGGPESEGDEAAD 360


>gi|325293276|ref|YP_004279140.1| recombinase A [Agrobacterium sp. H13-3]
 gi|325061129|gb|ADY64820.1| recombinase A [Agrobacterium sp. H13-3]
          Length = 363

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 269/346 (77%), Positives = 309/346 (89%), Gaps = 3/346 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E +S+GSL LDIALGIGG PKGRI
Sbjct: 14  VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETISTGSLSLDIALGIGGLPKGRI 72

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 73  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 132

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVDI+V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 133 GEQALEITDTLVRSGAVDILVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 192

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ
Sbjct: 193 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 252

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 253 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 312

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE--PAINTKDD 353
           REN+K FLR+N E+A  IE  LRQNAGL+AD  LQ   P     DD
Sbjct: 313 RENAKTFLRDNPEMASEIELALRQNAGLIADRFLQNGGPEAGESDD 358


>gi|132237|sp|P27865|RECA_RHIME RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|581521|emb|CAA42580.1| RecA protein [Sinorhizobium meliloti]
          Length = 348

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 269/353 (76%), Positives = 314/353 (88%), Gaps = 5/353 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI
Sbjct: 1   MDKSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 60  IEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S
Sbjct: 120 GEQALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ
Sbjct: 180 ISKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GELIDLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 240 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELIDLGVKAGIVEKSGAWFSYNSQRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           REN+K+FLREN E+   IE+ LRQNAGL+AD  L+    N   ++D D+  ++
Sbjct: 300 RENAKLFLRENPELLREIETALRQNAGLIADRFLE----NGGPESDGDEAADM 348


>gi|110633616|ref|YP_673824.1| recombinase A [Mesorhizobium sp. BNC1]
 gi|123058023|sp|Q11IW6|RECA_MESSB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|110284600|gb|ABG62659.1| RecA protein [Chelativorans sp. BNC1]
          Length = 360

 Score =  555 bits (1430), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 264/349 (75%), Positives = 309/349 (88%), Gaps = 1/349 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE +S+GSLGLDIALG+GG P
Sbjct: 10  EENGVDKSKALDAALSQIERAFGKGSIMRLGANDKVVE-IETISTGSLGLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+EIYGPESSGKTTLALHT+A++QK GG C F+DAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  RGRIIEIYGPESSGKTTLALHTVAEAQKKGGICGFIDAEHALDPVYARKLGVDLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEI D LVRSGAVD+IV+DSVAALTPRAEIEG+MGESLPGMQARLMSQALRK
Sbjct: 129 QPDTGEQALEICDTLVRSGAVDVIVVDSVAALTPRAEIEGEMGESLPGMQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SISRS  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+KD++  
Sbjct: 189 LTASISRSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDREET 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA +V+K+GAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGVVEKAGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           LGQGREN+K+FLR+N E+A  IE  LRQNAGL+A+  L+     + DDA
Sbjct: 309 LGQGRENAKLFLRDNPEVAREIELALRQNAGLIAERFLEADKDGSLDDA 357


>gi|227822194|ref|YP_002826165.1| recombinase A [Sinorhizobium fredii NGR234]
 gi|254790442|sp|C3MD93|RECA_RHISN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|227341194|gb|ACP25412.1| RecA protein [Sinorhizobium fredii NGR234]
          Length = 361

 Score =  555 bits (1429), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 266/348 (76%), Positives = 309/348 (88%), Gaps = 1/348 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI
Sbjct: 14  VDKSKALEAALSQIERSFGKGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRI 72

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 73  IEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDT 132

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S
Sbjct: 133 GEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 192

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ
Sbjct: 193 ISKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQ 252

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GELIDLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 253 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELIDLGVKAGIVEKSGAWFSYNSQRLGQG 312

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           REN+K+FLR+N ++   IE  LRQNAGL+AD  L+     ++ D   D
Sbjct: 313 RENAKLFLRDNPDLLREIEMALRQNAGLIADKFLENGGPESEGDEAAD 360


>gi|218463763|ref|ZP_03503854.1| recombinase A [Rhizobium etli Kim 5]
          Length = 362

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 268/350 (76%), Positives = 311/350 (88%), Gaps = 5/350 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG PKGRI
Sbjct: 14  VDKSKALEAALSQIERSFGKGSIMKLGSNENVIE-IETISTGSLGLDIALGVGGLPKGRI 72

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 73  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 132

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 133 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 192

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ
Sbjct: 193 ISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVIGNQ 252

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 253 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 312

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           REN+K FLR+N ++A  IE  LRQNAGL+AD  LQ    N   DAD  D+
Sbjct: 313 RENAKTFLRDNPDLAREIELALRQNAGLIADRFLQ----NGGPDADDGDS 358


>gi|90818644|emb|CAJ32627.1| recombinase A [Ochrobactrum anthropi]
 gi|90818646|emb|CAJ32628.1| recombinase A [Ochrobactrum anthropi]
          Length = 355

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 261/340 (76%), Positives = 307/340 (90%), Gaps = 1/340 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG P
Sbjct: 10  EENSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 189 LTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           LGQGREN+K +L++N E+A  IE+ LRQNAGL+A+  L++
Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLED 348


>gi|89473577|emb|CAJ34601.1| recombinase A [Ochrobactrum lupini]
 gi|89473579|emb|CAJ34602.1| recombinase A [Ochrobactrum anthropi]
 gi|90818638|emb|CAJ32624.1| recombinase A [Ochrobactrum anthropi ATCC 49188]
 gi|90818640|emb|CAJ32625.1| recombinase A [Ochrobactrum anthropi]
 gi|90818642|emb|CAJ32626.1| recombinase A [Ochrobactrum tritici]
 gi|90818654|emb|CAJ32632.1| recombinase A [Ochrobactrum anthropi]
 gi|90818660|emb|CAJ32635.1| recombinase A [Ochrobactrum anthropi]
 gi|90818662|emb|CAJ32636.1| recombinase A [Ochrobactrum anthropi]
 gi|90818674|emb|CAJ43897.1| recombinase A [Ochrobactrum anthropi]
          Length = 355

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 260/340 (76%), Positives = 306/340 (90%), Gaps = 1/340 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE V +GSL LDIALG+GG P
Sbjct: 10  EENSVDKTKALDAALSQIERAFGKGSIMRLGKNAPVIE-IETVPTGSLSLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 189 LTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           LGQGREN+K +L++N E+A  IE+ LRQNAGL+A+  L++
Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLED 348


>gi|190892009|ref|YP_001978551.1| recombinase A protein [Rhizobium etli CIAT 652]
 gi|238692491|sp|B3PPU4|RECA_RHIE6 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|190697288|gb|ACE91373.1| recombinase A protein [Rhizobium etli CIAT 652]
 gi|327190520|gb|EGE57614.1| recombinase A protein [Rhizobium etli CNPAF512]
          Length = 362

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 264/335 (78%), Positives = 305/335 (91%), Gaps = 1/335 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG PKGRI
Sbjct: 14  VDKSKALEAALSQIERSFGKGSIMKLGSNENVIE-IETISTGSLGLDIALGVGGLPKGRI 72

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 73  IEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 132

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 133 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 192

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ
Sbjct: 193 ISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVIGNQ 252

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 253 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 312

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
           REN+K FLR+N ++A  IE  LRQNAGL+AD  LQ
Sbjct: 313 RENAKTFLRDNPDLAREIELALRQNAGLIADRFLQ 347


>gi|90818668|emb|CAJ32639.1| recombinase A [Ochrobactrum tritici]
          Length = 355

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 260/340 (76%), Positives = 306/340 (90%), Gaps = 1/340 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE V +GSL LDIALG+GG P
Sbjct: 10  EENSVDKTKALDAALSQIERAFGKGSIMRLGKNAPVIE-IETVPTGSLSLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 189 LTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           LGQGREN+K +L++N E+A  IE+ LRQNAGL+A+  L++
Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLED 348


>gi|90818656|emb|CAJ32633.1| recombinase A [Ochrobactrum anthropi]
          Length = 355

 Score =  552 bits (1423), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 260/340 (76%), Positives = 306/340 (90%), Gaps = 1/340 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE V +GSL LDIALG+GG P
Sbjct: 10  EENSVDKTKALDAALSQIERAFGKGSIMRLGKNAPVIE-IETVPTGSLSLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 189 LTASISRSSCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           LGQGREN+K +L++N E+A  IE+ LRQNAGL+A+  L++
Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLED 348


>gi|256369626|ref|YP_003107136.1| recombinase A [Brucella microti CCM 4915]
 gi|255999788|gb|ACU48187.1| recombinase A [Brucella microti CCM 4915]
          Length = 361

 Score =  552 bits (1423), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 261/340 (76%), Positives = 306/340 (90%), Gaps = 1/340 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG P
Sbjct: 10  EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 189 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           LGQGREN+K +L++N E+A  IE++LRQNAGL+A+  L +
Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETMLRQNAGLIAEQFLDD 348


>gi|153009316|ref|YP_001370531.1| recombinase A [Ochrobactrum anthropi ATCC 49188]
 gi|166220662|sp|A6X0E8|RECA_OCHA4 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|151561204|gb|ABS14702.1| recA protein [Ochrobactrum anthropi ATCC 49188]
          Length = 361

 Score =  552 bits (1423), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 260/340 (76%), Positives = 306/340 (90%), Gaps = 1/340 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE V +GSL LDIALG+GG P
Sbjct: 10  EENSVDKTKALDAALSQIERAFGKGSIMRLGKNAPVIE-IETVPTGSLSLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 189 LTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           LGQGREN+K +L++N E+A  IE+ LRQNAGL+A+  L++
Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLED 348


>gi|90818650|emb|CAJ32630.1| recombinase A [Ochrobactrum anthropi]
 gi|90818652|emb|CAJ32631.1| recombinase A [Ochrobactrum anthropi]
 gi|90818666|emb|CAJ32638.1| recombinase A [Ochrobactrum intermedium]
          Length = 355

 Score =  552 bits (1422), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 261/340 (76%), Positives = 306/340 (90%), Gaps = 1/340 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG P
Sbjct: 10  EENSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 189 LTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           LGQGREN+K +L++N E+A  IE+ LRQNAGL+A+  L +
Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDD 348


>gi|218675164|ref|ZP_03524833.1| recombinase A [Rhizobium etli GR56]
          Length = 349

 Score =  552 bits (1422), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 263/335 (78%), Positives = 305/335 (91%), Gaps = 1/335 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG PKGRI
Sbjct: 1   MDKSKALEAALSQIERSFGKGSIMKLGSNENVIE-IETISTGSLGLDIALGVGGLPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 60  IEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 120 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ
Sbjct: 180 ISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 240 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
           REN+K FLR+N ++A  IE  LRQNAGL+AD  LQ
Sbjct: 300 RENAKTFLRDNPDLAREIELALRQNAGLIADRFLQ 334


>gi|159184959|ref|NP_354855.2| recombinase A [Agrobacterium tumefaciens str. C58]
 gi|417633|sp|P33156|RECA_AGRT5 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|159140237|gb|AAK87640.2| RecA protein [Agrobacterium tumefaciens str. C58]
          Length = 363

 Score =  552 bits (1422), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 266/349 (76%), Positives = 309/349 (88%), Gaps = 1/349 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 14  VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 72

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDT
Sbjct: 73  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDT 132

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 133 GEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 192

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ
Sbjct: 193 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 252

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 253 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 312

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           REN+K FLR+N + A  IE  LRQNAGL+AD  LQ    +  +  D  D
Sbjct: 313 RENAKTFLRDNPDTANEIELALRQNAGLIADRFLQNGGPDAGEGDDGSD 361


>gi|306840332|ref|ZP_07473104.1| recA protein [Brucella sp. BO2]
 gi|306289731|gb|EFM60920.1| recA protein [Brucella sp. BO2]
          Length = 389

 Score =  551 bits (1421), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 261/340 (76%), Positives = 305/340 (89%), Gaps = 1/340 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG P
Sbjct: 38  EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 96

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 97  KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 156

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 157 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 216

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 217 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 276

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 277 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 336

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           LGQGREN+K +L++N E+A  IE+ LRQNAGL+A+  L +
Sbjct: 337 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDD 376


>gi|23502079|ref|NP_698206.1| recombinase A [Brucella suis 1330]
 gi|62290113|ref|YP_221906.1| recombinase A [Brucella abortus bv. 1 str. 9-941]
 gi|82700036|ref|YP_414610.1| recombinase A [Brucella melitensis biovar Abortus 2308]
 gi|161619157|ref|YP_001593044.1| recombinase A [Brucella canis ATCC 23365]
 gi|189024351|ref|YP_001935119.1| RecA bacterial DNA recombination protein [Brucella abortus S19]
 gi|225852698|ref|YP_002732931.1| recombinase A [Brucella melitensis ATCC 23457]
 gi|229220681|ref|NP_539704.2| recombinase A [Brucella melitensis bv. 1 str. 16M]
 gi|260546662|ref|ZP_05822401.1| recombinase A [Brucella abortus NCTC 8038]
 gi|260565545|ref|ZP_05836029.1| recombinase A [Brucella melitensis bv. 1 str. 16M]
 gi|260566268|ref|ZP_05836738.1| recombinase A [Brucella suis bv. 4 str. 40]
 gi|260754946|ref|ZP_05867294.1| recombinase A [Brucella abortus bv. 6 str. 870]
 gi|261214198|ref|ZP_05928479.1| recombinase A [Brucella abortus bv. 3 str. Tulya]
 gi|261219550|ref|ZP_05933831.1| recombinase A [Brucella ceti M13/05/1]
 gi|261314076|ref|ZP_05953273.1| recombinase [Brucella pinnipedialis M163/99/10]
 gi|261317836|ref|ZP_05957033.1| recombinase A [Brucella pinnipedialis B2/94]
 gi|261322045|ref|ZP_05961242.1| recombinase A [Brucella ceti M644/93/1]
 gi|261752510|ref|ZP_05996219.1| recombinase A [Brucella suis bv. 5 str. 513]
 gi|261755169|ref|ZP_05998878.1| recombinase A [Brucella suis bv. 3 str. 686]
 gi|261758393|ref|ZP_06002102.1| recombinase A [Brucella sp. F5/99]
 gi|265984260|ref|ZP_06096995.1| recombinase A [Brucella sp. 83/13]
 gi|265999433|ref|ZP_05466343.2| recombinase A [Brucella melitensis bv. 2 str. 63/9]
 gi|306838011|ref|ZP_07470869.1| recA protein [Brucella sp. NF 2653]
 gi|306844103|ref|ZP_07476697.1| recA protein [Brucella sp. BO1]
 gi|54039031|sp|P65976|RECA_BRUSU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|54041791|sp|P65975|RECA_BRUME RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|68067733|sp|Q04761|RECA_BRUAB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123768490|sp|Q2YRU7|RECA_BRUA2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|189039591|sp|A9M5L8|RECA_BRUC2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238689380|sp|B2S648|RECA_BRUA1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|254790424|sp|C0RJG9|RECA_BRUMB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|23348037|gb|AAN30121.1| recA protein [Brucella suis 1330]
 gi|62196245|gb|AAX74545.1| RecA, recA protein [Brucella abortus bv. 1 str. 9-941]
 gi|82616137|emb|CAJ11180.1| RecA bacterial DNA recombination protein:ATP/GTP-binding site motif
           A (P-loop):AAA ATPase [Brucella melitensis biovar
           Abortus 2308]
 gi|161335968|gb|ABX62273.1| recA protein [Brucella canis ATCC 23365]
 gi|189019923|gb|ACD72645.1| RecA bacterial DNA recombination protein [Brucella abortus S19]
 gi|225641063|gb|ACO00977.1| recA protein [Brucella melitensis ATCC 23457]
 gi|260095712|gb|EEW79589.1| recombinase A [Brucella abortus NCTC 8038]
 gi|260151613|gb|EEW86707.1| recombinase A [Brucella melitensis bv. 1 str. 16M]
 gi|260155786|gb|EEW90866.1| recombinase A [Brucella suis bv. 4 str. 40]
 gi|260675054|gb|EEX61875.1| recombinase A [Brucella abortus bv. 6 str. 870]
 gi|260915805|gb|EEX82666.1| recombinase A [Brucella abortus bv. 3 str. Tulya]
 gi|260924639|gb|EEX91207.1| recombinase A [Brucella ceti M13/05/1]
 gi|261294735|gb|EEX98231.1| recombinase A [Brucella ceti M644/93/1]
 gi|261297059|gb|EEY00556.1| recombinase A [Brucella pinnipedialis B2/94]
 gi|261303102|gb|EEY06599.1| recombinase [Brucella pinnipedialis M163/99/10]
 gi|261738377|gb|EEY26373.1| recombinase A [Brucella sp. F5/99]
 gi|261742263|gb|EEY30189.1| recombinase A [Brucella suis bv. 5 str. 513]
 gi|261744922|gb|EEY32848.1| recombinase A [Brucella suis bv. 3 str. 686]
 gi|263093939|gb|EEZ17873.1| recombinase A [Brucella melitensis bv. 2 str. 63/9]
 gi|264662852|gb|EEZ33113.1| recombinase A [Brucella sp. 83/13]
 gi|306275546|gb|EFM57278.1| recA protein [Brucella sp. BO1]
 gi|306406935|gb|EFM63156.1| recA protein [Brucella sp. NF 2653]
          Length = 361

 Score =  551 bits (1420), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 261/340 (76%), Positives = 305/340 (89%), Gaps = 1/340 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG P
Sbjct: 10  EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 189 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           LGQGREN+K +L++N E+A  IE+ LRQNAGL+A+  L +
Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDD 348


>gi|89473563|emb|CAJ34594.1| recombinase A [Brucella abortus]
 gi|89473565|emb|CAJ34595.1| recombinase A [Brucella canis]
 gi|89473567|emb|CAJ34596.1| recombinase A [Brucella neotomae]
 gi|89473569|emb|CAJ34597.1| recombinase A [Brucella ovis]
 gi|89473571|emb|CAJ34598.1| recombinase A [Brucella suis 1330]
 gi|89473573|emb|CAJ34599.1| recombinase A [Brucella pinnipedialis]
 gi|89473575|emb|CAJ34600.1| recombinase A [Brucella ceti]
 gi|90818664|emb|CAJ32637.1| recombinase A [Brucella melitensis]
          Length = 355

 Score =  551 bits (1419), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 261/340 (76%), Positives = 305/340 (89%), Gaps = 1/340 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG P
Sbjct: 10  EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 189 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           LGQGREN+K +L++N E+A  IE+ LRQNAGL+A+  L +
Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDD 348


>gi|254502491|ref|ZP_05114642.1| protein RecA [Labrenzia alexandrii DFL-11]
 gi|222438562|gb|EEE45241.1| protein RecA [Labrenzia alexandrii DFL-11]
          Length = 355

 Score =  551 bits (1419), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 265/348 (76%), Positives = 315/348 (90%), Gaps = 3/348 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DK+KAL+AALSQI+R +GKG+IM++G QG + E ++ VS+GSLGLDIALGIGG P
Sbjct: 10  ESSQMDKTKALDAALSQIERAFGKGSIMRMG-QGQVVE-VQSVSTGSLGLDIALGIGGLP 67

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHT+A++QKTGG CAF+DAEHALD IYARKLGVD+ NLLIS
Sbjct: 68  KGRIVEIYGPESSGKTTLALHTVAEAQKTGGICAFIDAEHALDPIYARKLGVDIDNLLIS 127

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI D LVRSGA+D++VIDSVAALTP+AE+EG+MG+SLPGMQARLMSQALRK
Sbjct: 128 QPDAGEQALEIADTLVRSGAIDVLVIDSVAALTPKAELEGEMGDSLPGMQARLMSQALRK 187

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SIS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKDKD +
Sbjct: 188 LTASISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDKDEV 247

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PF+QVEFDI+YGEG+S  GELIDLGVK  IV+KSGAWFS+  QR
Sbjct: 248 VGNQTRVKVVKNKLAPPFRQVEFDIIYGEGVSKMGELIDLGVKGGIVEKSGAWFSYNSQR 307

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           LGQGRENSK FLREN EIA+ IE  +RQNAGL+A++++ +PA   +DD
Sbjct: 308 LGQGRENSKQFLRENKEIADEIELSIRQNAGLIAEAII-DPAGGEEDD 354


>gi|163843467|ref|YP_001627871.1| recombinase A [Brucella suis ATCC 23445]
 gi|189039592|sp|B0CH00|RECA_BRUSI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|163674190|gb|ABY38301.1| recA protein [Brucella suis ATCC 23445]
          Length = 361

 Score =  551 bits (1419), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 261/340 (76%), Positives = 305/340 (89%), Gaps = 1/340 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG P
Sbjct: 10  EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 189 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 249 MGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           LGQGREN+K +L++N E+A  IE+ LRQNAGL+A+  L +
Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDD 348


>gi|260758162|ref|ZP_05870510.1| recombinase A [Brucella abortus bv. 4 str. 292]
 gi|260761988|ref|ZP_05874331.1| recombinase A [Brucella abortus bv. 2 str. 86/8/59]
 gi|260668480|gb|EEX55420.1| recombinase A [Brucella abortus bv. 4 str. 292]
 gi|260672420|gb|EEX59241.1| recombinase A [Brucella abortus bv. 2 str. 86/8/59]
          Length = 420

 Score =  551 bits (1419), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 261/340 (76%), Positives = 305/340 (89%), Gaps = 1/340 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG P
Sbjct: 69  EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 127

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 128 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 187

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 188 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 247

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 248 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 307

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 308 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 367

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           LGQGREN+K +L++N E+A  IE+ LRQNAGL+A+  L +
Sbjct: 368 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDD 407


>gi|225627673|ref|ZP_03785710.1| recA protein [Brucella ceti str. Cudo]
 gi|225617678|gb|EEH14723.1| recA protein [Brucella ceti str. Cudo]
          Length = 424

 Score =  551 bits (1419), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 261/340 (76%), Positives = 305/340 (89%), Gaps = 1/340 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG P
Sbjct: 73  EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 131

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 132 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 191

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 192 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 251

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 252 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 311

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 312 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 371

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           LGQGREN+K +L++N E+A  IE+ LRQNAGL+A+  L +
Sbjct: 372 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDD 411


>gi|222086163|ref|YP_002544695.1| recombinase A protein [Agrobacterium radiobacter K84]
 gi|254790417|sp|B9JFS7|RECA_AGRRK RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|221723611|gb|ACM26767.1| recombinase A protein [Agrobacterium radiobacter K84]
          Length = 361

 Score =  551 bits (1419), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 267/346 (77%), Positives = 309/346 (89%), Gaps = 5/346 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 14  VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRI 72

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 73  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 132

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 133 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 192

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ
Sbjct: 193 ISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 252

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 253 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 312

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           REN+K+FLR+N ++A  IE  LRQNAGL+AD  LQ    N   DAD
Sbjct: 313 RENAKLFLRDNPDLAREIELSLRQNAGLIADRFLQ----NGGPDAD 354


>gi|237815621|ref|ZP_04594618.1| recA protein [Brucella abortus str. 2308 A]
 gi|237788919|gb|EEP63130.1| recA protein [Brucella abortus str. 2308 A]
          Length = 424

 Score =  551 bits (1419), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 261/340 (76%), Positives = 305/340 (89%), Gaps = 1/340 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG P
Sbjct: 73  EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 131

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 132 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 191

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 192 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 251

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 252 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 311

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 312 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 371

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           LGQGREN+K +L++N E+A  IE+ LRQNAGL+A+  L +
Sbjct: 372 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDD 411


>gi|297248509|ref|ZP_06932227.1| recombinase A [Brucella abortus bv. 5 str. B3196]
 gi|17982728|gb|AAL51968.1| reca protein [Brucella melitensis bv. 1 str. 16M]
 gi|297175678|gb|EFH35025.1| recombinase A [Brucella abortus bv. 5 str. B3196]
          Length = 378

 Score =  550 bits (1418), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 261/340 (76%), Positives = 305/340 (89%), Gaps = 1/340 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG P
Sbjct: 27  EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 85

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 86  KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 145

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 146 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 205

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 206 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 265

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 266 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 325

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           LGQGREN+K +L++N E+A  IE+ LRQNAGL+A+  L +
Sbjct: 326 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDD 365


>gi|241204889|ref|YP_002975985.1| recombinase A [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240858779|gb|ACS56446.1| recA protein [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 364

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 268/352 (76%), Positives = 311/352 (88%), Gaps = 10/352 (2%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 14  VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 72

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 73  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 132

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 133 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 192

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ
Sbjct: 193 ISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVIGNQ 252

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 253 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 312

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ----EPAINTKDDADKD 357
           REN+K FLR+N ++A  IE  LRQNAGL+AD  LQ    EP     DD D D
Sbjct: 313 RENAKTFLRDNPDLAREIELSLRQNAGLIADRFLQNGGPEP-----DDGDGD 359


>gi|148559731|ref|YP_001259122.1| recombinase A [Brucella ovis ATCC 25840]
 gi|148370988|gb|ABQ60967.1| protein RecA [Brucella ovis ATCC 25840]
          Length = 424

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 261/340 (76%), Positives = 305/340 (89%), Gaps = 1/340 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG P
Sbjct: 73  EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 131

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 132 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 191

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 192 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 251

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 252 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 311

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 312 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 371

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           LGQGREN+K +L++N E+A  IE+ LRQNAGL+A+  L +
Sbjct: 372 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDD 411


>gi|90818658|emb|CAJ32634.1| recombinase A [Ochrobactrum anthropi]
          Length = 355

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 259/340 (76%), Positives = 305/340 (89%), Gaps = 1/340 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE V +GSL LDIALG+GG P
Sbjct: 10  EENSVDKTKALDAALSQIERAFGKGSIMRLGKNAPVIE-IETVPTGSLSLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDALVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 189 LTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           LGQGREN+K +L++N E+A  IE+ LRQNAGL+ +  L++
Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLMPEQFLED 348


>gi|116252383|ref|YP_768221.1| recombinase A [Rhizobium leguminosarum bv. viciae 3841]
 gi|122988509|sp|Q1MFZ8|RECA_RHIL3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|115257031|emb|CAK08125.1| putative recombinase [Rhizobium leguminosarum bv. viciae 3841]
          Length = 364

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 261/335 (77%), Positives = 305/335 (91%), Gaps = 1/335 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 14  VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 72

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 73  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 132

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 133 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 192

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ
Sbjct: 193 ISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVIGNQ 252

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 253 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 312

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
           REN+K FLR+N ++A  IE  LRQNAGL+AD  LQ
Sbjct: 313 RENAKTFLRDNPDLAREIELSLRQNAGLIADRFLQ 347


>gi|209549552|ref|YP_002281469.1| recombinase A [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|226723636|sp|B5ZRG2|RECA_RHILW RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|209535308|gb|ACI55243.1| recA protein [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 362

 Score =  549 bits (1414), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 265/349 (75%), Positives = 309/349 (88%), Gaps = 5/349 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 14  VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 72

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 73  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 132

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 133 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 192

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ
Sbjct: 193 ISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVIGNQ 252

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 253 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 312

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           REN+K FLR+N ++A  IE  LRQNAGL+AD  LQ    N   D D  D
Sbjct: 313 RENAKTFLRDNPDLAREIELSLRQNAGLIADRFLQ----NGGPDPDDGD 357


>gi|256061282|ref|ZP_05451432.1| recombinase A [Brucella neotomae 5K33]
 gi|261325290|ref|ZP_05964487.1| recombinase A [Brucella neotomae 5K33]
 gi|261301270|gb|EEY04767.1| recombinase A [Brucella neotomae 5K33]
          Length = 348

 Score =  548 bits (1413), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 261/345 (75%), Positives = 308/345 (89%), Gaps = 3/345 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KAL+AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG PKGRI
Sbjct: 1   MDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 60  VEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT S
Sbjct: 120 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTGS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQ
Sbjct: 180 ISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QRLGQG
Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           REN+K +L++N E+A  IE+ LRQNAGL+A+  L +    T++DA
Sbjct: 300 RENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDDGG--TEEDA 342


>gi|1172888|sp|P24543|RECA_RHIET RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|683661|emb|CAA44346.1| RecA [Rhizobium phaseoli]
          Length = 361

 Score =  548 bits (1411), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 262/335 (78%), Positives = 304/335 (90%), Gaps = 1/335 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG PKGRI
Sbjct: 14  VDKSKALEAALSQIERSFGKGSIMKLGSNENVIE-IETISTGSLGLDIALGVGGLPKGRI 72

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 73  IEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 132

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 133 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 192

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ
Sbjct: 193 ISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVIGNQ 252

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 253 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 312

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
            EN+K FLR+N ++A  IE  LR+NAGL+AD  LQ
Sbjct: 313 GENAKTFLRDNPDLAREIELALRENAGLIADRFLQ 347


>gi|254689422|ref|ZP_05152676.1| recombinase A [Brucella abortus bv. 6 str. 870]
 gi|254693907|ref|ZP_05155735.1| recombinase A [Brucella abortus bv. 3 str. Tulya]
 gi|254697557|ref|ZP_05159385.1| recombinase A [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701942|ref|ZP_05163770.1| recombinase A [Brucella suis bv. 5 str. 513]
 gi|254704487|ref|ZP_05166315.1| recombinase A [Brucella suis bv. 3 str. 686]
 gi|254706617|ref|ZP_05168445.1| recombinase A [Brucella pinnipedialis M163/99/10]
 gi|254710273|ref|ZP_05172084.1| recombinase A [Brucella pinnipedialis B2/94]
 gi|254714270|ref|ZP_05176081.1| recombinase A [Brucella ceti M644/93/1]
 gi|254717707|ref|ZP_05179518.1| recombinase A [Brucella ceti M13/05/1]
 gi|254719260|ref|ZP_05181071.1| recombinase A [Brucella sp. 83/13]
 gi|254730451|ref|ZP_05189029.1| recombinase A [Brucella abortus bv. 4 str. 292]
 gi|256031767|ref|ZP_05445381.1| recombinase A [Brucella pinnipedialis M292/94/1]
 gi|256044852|ref|ZP_05447756.1| recombinase A [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113756|ref|ZP_05454560.1| recombinase A [Brucella melitensis bv. 3 str. Ether]
 gi|256159937|ref|ZP_05457655.1| recombinase A [Brucella ceti M490/95/1]
 gi|256255168|ref|ZP_05460704.1| recombinase A [Brucella ceti B1/94]
 gi|256257668|ref|ZP_05463204.1| recombinase A [Brucella abortus bv. 9 str. C68]
 gi|260168901|ref|ZP_05755712.1| recombinase A [Brucella sp. F5/99]
 gi|260883955|ref|ZP_05895569.1| recombinase A [Brucella abortus bv. 9 str. C68]
 gi|261222365|ref|ZP_05936646.1| recombinase A [Brucella ceti B1/94]
 gi|265988866|ref|ZP_06101423.1| recombinase A [Brucella pinnipedialis M292/94/1]
 gi|265991280|ref|ZP_06103837.1| recombinase A [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995117|ref|ZP_06107674.1| recombinase A [Brucella melitensis bv. 3 str. Ether]
 gi|265998330|ref|ZP_06110887.1| recombinase A [Brucella ceti M490/95/1]
 gi|294852537|ref|ZP_06793210.1| RecA protein [Brucella sp. NVSL 07-0026]
 gi|260873483|gb|EEX80552.1| recombinase A [Brucella abortus bv. 9 str. C68]
 gi|260920949|gb|EEX87602.1| recombinase A [Brucella ceti B1/94]
 gi|262552798|gb|EEZ08788.1| recombinase A [Brucella ceti M490/95/1]
 gi|262766230|gb|EEZ12019.1| recombinase A [Brucella melitensis bv. 3 str. Ether]
 gi|263002064|gb|EEZ14639.1| recombinase A [Brucella melitensis bv. 1 str. Rev.1]
 gi|264661063|gb|EEZ31324.1| recombinase A [Brucella pinnipedialis M292/94/1]
 gi|294821126|gb|EFG38125.1| RecA protein [Brucella sp. NVSL 07-0026]
 gi|326409222|gb|ADZ66287.1| RecA bacterial DNA recombination protein [Brucella melitensis M28]
 gi|326538931|gb|ADZ87146.1| recA protein [Brucella melitensis M5-90]
          Length = 348

 Score =  547 bits (1410), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 258/336 (76%), Positives = 303/336 (90%), Gaps = 1/336 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KAL+AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG PKGRI
Sbjct: 1   MDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 60  VEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT S
Sbjct: 120 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTGS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQ
Sbjct: 180 ISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QRLGQG
Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           REN+K +L++N E+A  IE+ LRQNAGL+A+  L +
Sbjct: 300 RENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDD 335


>gi|13470353|ref|NP_101919.1| recombinase A [Mesorhizobium loti MAFF303099]
 gi|20178054|sp|Q98NQ6|RECA_RHILO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|14021092|dbj|BAB47705.1| recombination protein; RecA [Mesorhizobium loti MAFF303099]
          Length = 365

 Score =  545 bits (1403), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 259/349 (74%), Positives = 307/349 (87%), Gaps = 1/349 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 14  VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 72

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 73  IEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 132

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 133 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 192

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ISRS  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+KD+D + GNQ
Sbjct: 193 ISRSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDRDEVVGNQ 252

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFK VEFDIMYGEG+S  GEL+DLGVKA +V+KSGAWFS+  QRLGQG
Sbjct: 253 TRVKVVKNKLAPPFKVVEFDIMYGEGVSKTGELVDLGVKAGVVEKSGAWFSYNSQRLGQG 312

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           REN+K+FLR+N + A  IE  LRQNAGL+A+  L+       DD  +D+
Sbjct: 313 RENAKLFLRDNPDTAREIELALRQNAGLIAEKFLENGGSEGGDDGFEDE 361


>gi|319405870|emb|CBI79502.1| RecA protein [Bartonella sp. AR 15-3]
          Length = 347

 Score =  544 bits (1402), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 258/344 (75%), Positives = 308/344 (89%), Gaps = 1/344 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KALE+ALSQI+R +GKG+IM+LG +  + E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 1   MDKTKALESALSQIERSFGKGSIMRLGQKEQVVE-IETVSTGSLSLDIALGIGGLPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALH+IA++QK GG CAF+DAEHALD IYARKLGVDL+NL ISQPDT
Sbjct: 60  IEIYGPESSGKTTLALHSIAEAQKNGGICAFIDAEHALDPIYARKLGVDLENLFISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEIT+ LVRSGAVD++V+DSVAALTPRAEI+G+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 120 GEQALEITETLVRSGAVDVLVVDSVAALTPRAEIDGEMGDSLPGLQARLMSQALRKLTAS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D+I G+Q
Sbjct: 180 IFRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDTIIGSQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDI+YGEGIS  GEL+DLGVK  +V+KSG+WFS+  QRLGQG
Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIIYGEGISKLGELVDLGVKVGLVEKSGSWFSYNSQRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           REN+K FLRE+ EIA  IE+ LRQNAGL+A  LL+   + + +D
Sbjct: 300 RENAKQFLREHTEIASEIETALRQNAGLIAIELLENSGLESTED 343


>gi|319784063|ref|YP_004143539.1| recA protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169951|gb|ADV13489.1| recA protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 365

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 258/350 (73%), Positives = 308/350 (88%), Gaps = 1/350 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 14  VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 72

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 73  IEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 132

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 133 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 192

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ISRS  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+KD+D + GNQ
Sbjct: 193 ISRSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDRDEVVGNQ 252

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFK VEFDIMYGEG+S  GEL+DLGVKA +V+KSGAWFS+  QRLGQG
Sbjct: 253 TRVKVVKNKLAPPFKVVEFDIMYGEGVSKTGELVDLGVKAGVVEKSGAWFSYNSQRLGQG 312

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           REN+K+FLR+N + A  IE  LRQNAGL+A+  L+       DD  ++++
Sbjct: 313 RENAKLFLRDNPDTAREIELALRQNAGLIAEKFLENGGSEGGDDGFEEES 362


>gi|132236|sp|P24074|RECA_RHILV RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|581514|emb|CAA42578.1| RecA protein [Rhizobium leguminosarum]
          Length = 351

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 257/335 (76%), Positives = 304/335 (90%), Gaps = 1/335 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 1   MDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 60  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSG VD++V+DSVAALTPRAEIEG+MG+++PG+QARLMSQALRKLT+S
Sbjct: 120 GEQALEITDTLVRSGRVDVLVVDSVAALTPRAEIEGEMGDTVPGLQARLMSQALRKLTAS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ
Sbjct: 180 ISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVIGNQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 240 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
           REN+K FLR+N ++A  IE  LRQNAGL+AD  LQ
Sbjct: 300 RENAKTFLRDNPDLAREIELSLRQNAGLIADRFLQ 334


>gi|304391434|ref|ZP_07373376.1| protein RecA [Ahrensia sp. R2A130]
 gi|303295663|gb|EFL90021.1| protein RecA [Ahrensia sp. R2A130]
          Length = 368

 Score =  542 bits (1396), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 258/348 (74%), Positives = 303/348 (87%), Gaps = 1/348 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKALEAAL QI+R +GKG+IM+LG+     E IE +S+G +GLDIALG+GG PKGRI
Sbjct: 14  LDKSKALEAALGQIERAFGKGSIMRLGANEQAVE-IETISTGCIGLDIALGVGGLPKGRI 72

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALHT+A++QK GG CAFVDAEHALD +YA+KLGV+L+NLLISQPDT
Sbjct: 73  VEIYGPESSGKTTMALHTVAEAQKEGGICAFVDAEHALDPVYAKKLGVNLENLLISQPDT 132

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA DI+VIDSVAALTPRAEIEG+MG SLPG+QARLMSQALRKLT+S
Sbjct: 133 GEQALEIADTLVRSGACDILVIDSVAALTPRAEIEGEMGASLPGLQARLMSQALRKLTAS 192

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D I GNQ
Sbjct: 193 ISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDEIVGNQ 252

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TR+KVVKNK+A PFKQVEFDIMYGEG+S  GELIDLGV A IV+KSG+WFS+  QRLGQG
Sbjct: 253 TRIKVVKNKLAPPFKQVEFDIMYGEGVSKMGELIDLGVTAGIVEKSGSWFSYDSQRLGQG 312

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           REN+K FLR+N E+AE IE  +R NAGL+ + LL EP    +D  D +
Sbjct: 313 RENAKQFLRDNPEVAETIEKAIRTNAGLIGEKLLDEPTGKDEDGTDPE 360


>gi|296448224|ref|ZP_06890120.1| recA protein [Methylosinus trichosporium OB3b]
 gi|296254264|gb|EFH01395.1| recA protein [Methylosinus trichosporium OB3b]
          Length = 358

 Score =  541 bits (1395), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 256/334 (76%), Positives = 300/334 (89%), Gaps = 1/334 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDK+KAL+AALSQI+R +GKG+IM+LG      E IE +S+GSLGLDIALG+GG P+GR+
Sbjct: 14  VDKTKALDAALSQIERAFGKGSIMRLGKNQKAVE-IETISTGSLGLDIALGVGGLPRGRV 72

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTL LH IA++QK GG CAFVDAEHALD +YARKLGV+L+ LLISQPDT
Sbjct: 73  VEIYGPESSGKTTLTLHVIAEAQKKGGVCAFVDAEHALDPVYARKLGVNLEELLISQPDT 132

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MGE  PG+QARLMSQALRKLT+S
Sbjct: 133 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGEVQPGLQARLMSQALRKLTAS 192

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ISRS  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+GSIKD+D +TGNQ
Sbjct: 193 ISRSNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGSIKDRDEVTGNQ 252

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEG+S  GEL+DLGVKA +VDKSGAWFSF  QRLGQG
Sbjct: 253 TRVKVVKNKVAPPFKQVEFDIMYGEGVSKVGELVDLGVKAGVVDKSGAWFSFDSQRLGQG 312

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343
           REN+K FL++N E AE IE+ +R+NAGL+A+ +L
Sbjct: 313 RENAKAFLKQNKEAAERIEAAIRENAGLIAERIL 346


>gi|260460848|ref|ZP_05809098.1| recA protein [Mesorhizobium opportunistum WSM2075]
 gi|259033425|gb|EEW34686.1| recA protein [Mesorhizobium opportunistum WSM2075]
          Length = 353

 Score =  541 bits (1394), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 255/335 (76%), Positives = 302/335 (90%), Gaps = 1/335 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 1   MDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 60  IEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 120 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ISRS  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+KD+D + GNQ
Sbjct: 180 ISRSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDRDEVVGNQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFK VEFDIMYGEG+S  GEL+DLGVKA +V+KSGAWFS+  QRLGQG
Sbjct: 240 TRVKVVKNKLAPPFKVVEFDIMYGEGVSKTGELVDLGVKAGVVEKSGAWFSYNSQRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
           REN+K+FLR+N + A  IE  LRQNAGL+A+  L+
Sbjct: 300 RENAKLFLRDNPDTAREIELALRQNAGLIAEKFLE 334


>gi|240850807|ref|YP_002972207.1| recombinase A [Bartonella grahamii as4aup]
 gi|240267930|gb|ACS51518.1| recombinase A [Bartonella grahamii as4aup]
          Length = 347

 Score =  541 bits (1394), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 261/335 (77%), Positives = 302/335 (90%), Gaps = 1/335 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KAL+AALSQI+R +GKG+IM+LG +  + E IE V +GSL LDIALGIGG PKGRI
Sbjct: 1   MDKTKALDAALSQIERSFGKGSIMRLGQKEQVVE-IETVPTGSLSLDIALGIGGLPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH IA++QK GG CAF+DAEHALD IYARKLGVDL+NL ISQPDT
Sbjct: 60  VEIYGPESSGKTTLALHAIAEAQKGGGICAFIDAEHALDPIYARKLGVDLENLFISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEIT+ LVRSGAVD++V+DSVAALTPRAEI+G+MG++LPG+QARLMS+ALRKLT++
Sbjct: 120 GEQALEITETLVRSGAVDVLVVDSVAALTPRAEIDGEMGDALPGLQARLMSKALRKLTAA 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I RS C++VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIKD+D+I GNQ
Sbjct: 180 IFRSNCMVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKDRDAIVGNQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDI+YGEGIS  GELIDLGVK  IV+KSGAWFS+  QRLGQG
Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIIYGEGISKVGELIDLGVKVGIVEKSGAWFSYNSQRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
           REN+K FLRE+ EIA  IES LRQNAGL+A  LL+
Sbjct: 300 RENAKQFLREHAEIATEIESALRQNAGLIAIELLE 334


>gi|307945635|ref|ZP_07660971.1| protein RecA [Roseibium sp. TrichSKD4]
 gi|307771508|gb|EFO30733.1| protein RecA [Roseibium sp. TrichSKD4]
          Length = 355

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 260/349 (74%), Positives = 312/349 (89%), Gaps = 3/349 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DK+KAL+AALSQI+R +GKG+IM++G QG   E ++ VS+GSLGLDIALGIGG P
Sbjct: 10  ESSQMDKTKALDAALSQIERAFGKGSIMRMG-QGQAVE-VQSVSTGSLGLDIALGIGGLP 67

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHT+A++QKTGG CAFVDAEHALD IYARKLGV++ +LLIS
Sbjct: 68  KGRIVEIYGPESSGKTTLALHTVAEAQKTGGICAFVDAEHALDPIYARKLGVNIDDLLIS 127

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI D LVRSGA+D++VIDSVAALTP+AE+EG+MG+SLPGMQARLMSQALRK
Sbjct: 128 QPDAGEQALEIADTLVRSGAIDVLVIDSVAALTPKAELEGEMGDSLPGMQARLMSQALRK 187

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SIS+S C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D +
Sbjct: 188 LTASISKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDEV 247

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PF+QVEFDI+YGEG+S  GELIDLGVK  IV+KSGAWFS+  QR
Sbjct: 248 VGNQTRVKVVKNKLAPPFRQVEFDIIYGEGVSKMGELIDLGVKGGIVEKSGAWFSYNSQR 307

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           LGQGREN+K FLR+N EIAE IE  +RQNAGL+A++++ +P     DD+
Sbjct: 308 LGQGRENAKQFLRDNPEIAEEIELAVRQNAGLIAEAII-DPTGGEDDDS 355


>gi|49474376|ref|YP_032418.1| recombinase A [Bartonella quintana str. Toulouse]
 gi|59798256|sp|Q6FZF0|RECA_BARQU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|49239880|emb|CAF26278.1| recA protein [Bartonella quintana str. Toulouse]
          Length = 347

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 258/335 (77%), Positives = 301/335 (89%), Gaps = 1/335 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KAL+AALSQI+R +GKG+IM+LG +  + E IE + +GSL LDIALG+GG PKGRI
Sbjct: 1   MDKTKALDAALSQIERSFGKGSIMRLGQKEQVVE-IETIPTGSLSLDIALGVGGLPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH IA++QK GG CAF+DAEHALD IYARKLGVDL+NL ISQPDT
Sbjct: 60  VEIYGPESSGKTTLALHAIAEAQKNGGVCAFIDAEHALDPIYARKLGVDLENLFISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEIT+ LVRSGAVD++V+DSVAALTPRAEI+G+MG++LPG+QARLMS+ALRKLT+S
Sbjct: 120 GEQALEITETLVRSGAVDVLVVDSVAALTPRAEIDGEMGDALPGLQARLMSKALRKLTAS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRRVGSIKD+D I GNQ
Sbjct: 180 IFRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGSIKDRDMIVGNQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDI+YGEGIS  GELIDLGVK  IV+KSG+WFS+  QRLGQG
Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIIYGEGISKLGELIDLGVKVGIVEKSGSWFSYNSQRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
           REN+K FLRE+ EIA  IE+ LRQNAGL+A  LL+
Sbjct: 300 RENAKQFLREHAEIATEIETALRQNAGLIAIELLE 334


>gi|118588632|ref|ZP_01546040.1| recombinase A [Stappia aggregata IAM 12614]
 gi|118438618|gb|EAV45251.1| recombinase A [Stappia aggregata IAM 12614]
          Length = 344

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 255/346 (73%), Positives = 314/346 (90%), Gaps = 3/346 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KAL+AALSQI+R +GKG+IM++G QG + E ++ VS+GSLGLDIALGIGG P+GRI
Sbjct: 1   MDKTKALDAALSQIERAFGKGSIMKMG-QGQVVE-VQAVSTGSLGLDIALGIGGLPRGRI 58

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH ++++QKTGG CAF+DAEHALD IYARKLGVD+ NLLISQPD 
Sbjct: 59  VEIYGPESSGKTTLALHAVSEAQKTGGICAFIDAEHALDPIYARKLGVDIDNLLISQPDA 118

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++VIDSVAALTP+AE+EG+MG+SLPGMQARLMSQALRKLT+S
Sbjct: 119 GEQALEIADTLVRSGAIDVLVIDSVAALTPKAELEGEMGDSLPGMQARLMSQALRKLTAS 178

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D + GNQ
Sbjct: 179 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDEVVGNQ 238

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PF+QVEFDI+YGEG+S  GELIDLGVK +IV+KSGAWFS+  QRLGQG
Sbjct: 239 TRVKVVKNKLAPPFRQVEFDIVYGEGVSKTGELIDLGVKGNIVEKSGAWFSYNSQRLGQG 298

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           REN+K FL++N EIA+ IE  +RQNAGL+A++++ +P    +++A+
Sbjct: 299 RENAKQFLKDNPEIADEIELAIRQNAGLIAEAII-DPDAGVEEEAE 343


>gi|319407396|emb|CBI81047.1| RecA protein [Bartonella sp. 1-1C]
          Length = 347

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 257/343 (74%), Positives = 306/343 (89%), Gaps = 1/343 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KALEAALSQI+R +GKG+IM+LG +  + E IE VS+GSL LDIALG+GG PKGRI
Sbjct: 1   MDKTKALEAALSQIERSFGKGSIMRLGQKEQVVE-IETVSTGSLSLDIALGVGGLPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALH+IA++QK GG CAFVDAEHALD IYARKLGVDL+NL ISQPDT
Sbjct: 60  IEIYGPESSGKTTLALHSIAEAQKNGGVCAFVDAEHALDPIYARKLGVDLENLFISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEIT+ LVRSGAVD++V+DSVAALTPRAEI+G+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 120 GEQALEITETLVRSGAVDVLVVDSVAALTPRAEIDGEMGDSLPGLQARLMSQALRKLTAS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D+I G+Q
Sbjct: 180 IFRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDTIIGSQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVK+VKNK+A PFKQVEFDI+YGEGIS  GELIDLGVK  +V+KSG+WFS+  QRLGQG
Sbjct: 240 TRVKIVKNKLAPPFKQVEFDIIYGEGISKLGELIDLGVKVGLVEKSGSWFSYNSQRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           REN+K FL E+ EIA  IE+ LRQNAGL+A  LL+   + + +
Sbjct: 300 RENAKQFLCEHTEIAAEIETALRQNAGLIAIELLENSGVESTE 342


>gi|319404396|emb|CBI77999.1| RecA protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 347

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 257/343 (74%), Positives = 305/343 (88%), Gaps = 1/343 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KALEAALSQI+R +GKG+IM+LG +  + E IE VS+GSL LDIALG+GG PKGRI
Sbjct: 1   MDKTKALEAALSQIERSFGKGSIMRLGQKEQVVE-IETVSTGSLSLDIALGVGGLPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALH+IA++QK GG CAFVDAEHALD IYARKLGVDL NL ISQPDT
Sbjct: 60  IEIYGPESSGKTTLALHSIAEAQKNGGVCAFVDAEHALDPIYARKLGVDLANLFISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEIT+ LVRSGAVD++V+DSVAALTPRAEI+G+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 120 GEQALEITETLVRSGAVDVLVVDSVAALTPRAEIDGEMGDSLPGLQARLMSQALRKLTAS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D+I G+Q
Sbjct: 180 IFRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDTIIGSQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVK+VKNK+A PFKQVEFDI+YGEGIS  GELIDLGVK  +V+KSG+WFS+  QRLGQG
Sbjct: 240 TRVKIVKNKLAPPFKQVEFDIIYGEGISKLGELIDLGVKVGLVEKSGSWFSYNSQRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           REN+K FL E+ EIA  IE+ LRQNAGL+A  LL+   + + +
Sbjct: 300 RENAKQFLCEHTEIAAEIETALRQNAGLIAIELLENSGVESTE 342


>gi|319899071|ref|YP_004159164.1| RecA protein [Bartonella clarridgeiae 73]
 gi|319403035|emb|CBI76590.1| RecA protein [Bartonella clarridgeiae 73]
          Length = 347

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 258/350 (73%), Positives = 310/350 (88%), Gaps = 4/350 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KALEAALSQI+R +GKG+IM+LG +  + E IE VS+GSL LDIALG+GG PKGRI
Sbjct: 1   MDKTKALEAALSQIERSFGKGSIMRLGQKEQVVE-IETVSTGSLSLDIALGVGGLPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALH+IA++QK GG CAF+DAEHALD IYARKLGVDL+NL ISQPDT
Sbjct: 60  IEIYGPESSGKTTLALHSIAEAQKNGGICAFIDAEHALDPIYARKLGVDLENLFISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEIT+ LVRSGAVD++V+DSVAALTPRAEI+G+MG++LPG+QARLMSQALRKLT+S
Sbjct: 120 GEQALEITETLVRSGAVDVLVVDSVAALTPRAEIDGEMGDALPGLQARLMSQALRKLTAS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D++ G+Q
Sbjct: 180 IFRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDTVIGSQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDI+YGEGIS  GELIDLGVK  +V+KSG+WFS+  QRLGQG
Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIIYGEGISKLGELIDLGVKVGLVEKSGSWFSYNSQRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           REN+K FLRE  EIA  IE+ LRQNAGL+A  LL+       ++A+ D++
Sbjct: 300 RENAKQFLREYAEIAAEIETALRQNAGLIAIELLENAG---SENAEGDES 346


>gi|163868622|ref|YP_001609831.1| recombinase A [Bartonella tribocorum CIP 105476]
 gi|189039590|sp|A9IVY9|RECA_BART1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|161018278|emb|CAK01836.1| RecA protein [Bartonella tribocorum CIP 105476]
          Length = 347

 Score =  538 bits (1387), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 262/345 (75%), Positives = 306/345 (88%), Gaps = 2/345 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KAL+AALSQI+R +GKG+IM+LG +  + E IE V +GSL LDIALGIGG PKGRI
Sbjct: 1   MDKTKALDAALSQIERSFGKGSIMRLGQKEQVVE-IETVPTGSLSLDIALGIGGLPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH IA++QK GG CAF+DAEHALD IYARKLGVDL+NL ISQPDT
Sbjct: 60  VEIYGPESSGKTTLALHAIAEAQKGGGICAFIDAEHALDPIYARKLGVDLENLFISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEIT+ LVRSGAVD++V+DSVAALTPRAEI+G+MG++LPG+QARLMS+ALRKLT+S
Sbjct: 120 GEQALEITETLVRSGAVDVLVVDSVAALTPRAEIDGEMGDALPGLQARLMSKALRKLTAS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIKD+D I GNQ
Sbjct: 180 IFRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKDRDMIVGNQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDI+YGEGIS  GELIDLGVK  IV+KSG+WFS+  QRLGQG
Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIIYGEGISKLGELIDLGVKVGIVEKSGSWFSYNSQRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP-AINTKDD 353
           REN+K FLRE+ EIA  IE+ LRQNAGL+A  LL+   + NT+ D
Sbjct: 300 RENAKQFLREHAEIAAEIETALRQNAGLIAIELLENAGSENTEGD 344


>gi|207366352|emb|CAQ58071.1| recombinase A [Agrobacterium tumefaciens]
          Length = 322

 Score =  538 bits (1385), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 257/323 (79%), Positives = 295/323 (91%), Gaps = 1/323 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI+EIY
Sbjct: 1   KALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRIIEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGEQA
Sbjct: 60  GPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 LEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 179

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
           KC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQTRVK
Sbjct: 180 KCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQTRVK 239

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQGREN+
Sbjct: 240 VVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGRENA 299

Query: 314 KIFLRENIEIAENIESLLRQNAG 336
           KIFLR+N E A  IE  LRQNAG
Sbjct: 300 KIFLRDNPETANEIELALRQNAG 322


>gi|158424479|ref|YP_001525771.1| recombinase A [Azorhizobium caulinodans ORS 571]
 gi|158331368|dbj|BAF88853.1| RecA protein [Azorhizobium caulinodans ORS 571]
          Length = 363

 Score =  538 bits (1385), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 255/348 (73%), Positives = 307/348 (88%), Gaps = 5/348 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KAL+AALSQI+R +GKG+IM+LG  G + E +E +SSGSLGLDIALGIGG PKGRI
Sbjct: 14  MDKTKALDAALSQIERHFGKGSIMRLGKSGKVME-VESISSGSLGLDIALGIGGLPKGRI 72

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHTIA++QK GGTCAF+DAEHALD IYARKLGV+L +LLISQPD 
Sbjct: 73  VEIYGPESSGKTTLALHTIAEAQKKGGTCAFIDAEHALDPIYARKLGVNLDDLLISQPDA 132

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++V+DSVAALTPRAE++G+MG++ PGMQARLMSQALRKLT+S
Sbjct: 133 GEQALEIADTLVRSGAIDVLVVDSVAALTPRAELDGEMGDNQPGMQARLMSQALRKLTAS 192

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G IK++D + GNQ
Sbjct: 193 ISKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGMIKERDEVVGNQ 252

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEG+S  GEL+DLGV+A +V+KSGAWFS+  QRLGQG
Sbjct: 253 TRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGELLDLGVRAGVVEKSGAWFSYDSQRLGQG 312

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           REN+K FLR+N E+A  IE+ +RQNAGL+AD +L      + +D D D
Sbjct: 313 RENAKTFLRQNPEVAGRIEATIRQNAGLIADQIL----TGSPEDEDGD 356


>gi|298292139|ref|YP_003694078.1| recA protein [Starkeya novella DSM 506]
 gi|296928650|gb|ADH89459.1| recA protein [Starkeya novella DSM 506]
          Length = 360

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 258/348 (74%), Positives = 307/348 (88%), Gaps = 2/348 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KAL+AALSQI+R +GKG+IM+LG    I E IE VS+GSLGLDIALGIGG P+GRI
Sbjct: 14  MDKAKALDAALSQIERHFGKGSIMRLGKNDKIME-IETVSTGSLGLDIALGIGGLPRGRI 72

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEI+GPESSGKTTLALHTIA+SQK GG CAF+DAEHALD IYARKLGVDL NLLISQPD 
Sbjct: 73  VEIFGPESSGKTTLALHTIAESQKKGGVCAFIDAEHALDPIYARKLGVDLDNLLISQPDA 132

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++V+DSVAALTPRAE++G+MG++ PGMQARLMSQALRKLT+S
Sbjct: 133 GEQALEIADTLVRSGAVDVLVVDSVAALTPRAELDGEMGDNQPGMQARLMSQALRKLTAS 192

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I+RS+ +++FINQ+RMKIGVM+GSPETTTGGNALKFYSSVRLDIRR+G+IK++D + GNQ
Sbjct: 193 INRSQTMVIFINQIRMKIGVMYGSPETTTGGNALKFYSSVRLDIRRIGAIKERDEVVGNQ 252

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEG+S  GELIDLG+KA +V+KSGAWFS+  QRLGQG
Sbjct: 253 TRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGELIDLGIKAGVVEKSGAWFSYDSQRLGQG 312

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           REN+K FLR+N ++A  IE+ +RQNAGL+A+ +L   A    DD D +
Sbjct: 313 RENAKNFLRQNPDVAGRIEATIRQNAGLIAEQILAGEA-GEDDDGDAE 359


>gi|121602844|ref|YP_989026.1| recombinase A [Bartonella bacilliformis KC583]
 gi|166199600|sp|A1USS3|RECA_BARBK RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|120615021|gb|ABM45622.1| protein RecA [Bartonella bacilliformis KC583]
          Length = 347

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 257/335 (76%), Positives = 300/335 (89%), Gaps = 1/335 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK KAL+AALSQI+R +GKG+IM+LG +  + E IE +S+GSL LDIALG+GG PKGRI
Sbjct: 1   MDKKKALDAALSQIERSFGKGSIMRLGQKEGVVE-IETISTGSLSLDIALGVGGLPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALH IA++QK GG CAFVDAEHALD IYARKLGVDL+NL +SQPDT
Sbjct: 60  IEIYGPESSGKTTLALHAIAEAQKNGGVCAFVDAEHALDPIYARKLGVDLENLFVSQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEIT+ LVRSGAVD++V+DSVAALTPRAEI+G+M +SLPG+QARLMS+ALRKLT+S
Sbjct: 120 GEQALEITETLVRSGAVDVLVVDSVAALTPRAEIDGEMSDSLPGLQARLMSKALRKLTAS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIKDK+ + GNQ
Sbjct: 180 IFRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKDKELVVGNQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDI+YGEGIS  GELIDLGVK  IV+KSGAWFS+  QRLGQG
Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIIYGEGISKLGELIDLGVKVGIVEKSGAWFSYNSQRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
           REN+K FLRE+ EIA  IE+ LRQNAGL+A  LL+
Sbjct: 300 RENAKQFLREHAEIAAEIETALRQNAGLLAIELLE 334


>gi|207366314|emb|CAQ58052.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366316|emb|CAQ58053.1| recombinase A [Agrobacterium tumefaciens]
          Length = 323

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 256/319 (80%), Positives = 293/319 (91%), Gaps = 1/319 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVDI+V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDILVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ
Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301

Query: 310 RENSKIFLRENIEIAENIE 328
           REN+K FLR+N E A  IE
Sbjct: 302 RENAKTFLRDNPETANEIE 320


>gi|207366250|emb|CAQ58020.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366252|emb|CAQ58021.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366254|emb|CAQ58022.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366256|emb|CAQ58023.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366258|emb|CAQ58024.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366260|emb|CAQ58025.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366262|emb|CAQ58026.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366264|emb|CAQ58027.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366266|emb|CAQ58028.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366268|emb|CAQ58029.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366270|emb|CAQ58030.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366272|emb|CAQ58031.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366274|emb|CAQ58032.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366276|emb|CAQ58033.1| recombinase A [Agrobacterium tumefaciens]
          Length = 323

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 255/319 (79%), Positives = 294/319 (92%), Gaps = 1/319 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E +S+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETISTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVDI+V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDILVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ
Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301

Query: 310 RENSKIFLRENIEIAENIE 328
           REN+K FLR+N E+A  IE
Sbjct: 302 RENAKTFLRDNPEMASEIE 320


>gi|328543179|ref|YP_004303288.1| recombinase A [Polymorphum gilvum SL003B-26A1]
 gi|326412925|gb|ADZ69988.1| recombinase A [Polymorphum gilvum SL003B-26A1]
          Length = 344

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 256/349 (73%), Positives = 310/349 (88%), Gaps = 5/349 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KAL+AALSQI+R +GKG+IM+LG QG   E ++ VS+GSLGLDIALG+GG P+GRI
Sbjct: 1   MDKTKALDAALSQIERAFGKGSIMRLG-QGQAVE-VQTVSTGSLGLDIALGVGGLPRGRI 58

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHTIA++QK GG CAF+DAEHALD +YARKLGV++ +LLISQPD 
Sbjct: 59  VEIYGPESSGKTTLALHTIAEAQKLGGICAFIDAEHALDPVYARKLGVNIDDLLISQPDA 118

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA++++VIDSVAALTP+AE+EG+MG+SLPGMQARLMSQALRKLT+S
Sbjct: 119 GEQALEIADTLVRSGAIEVLVIDSVAALTPKAELEGEMGDSLPGMQARLMSQALRKLTAS 178

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIKD+D + GNQ
Sbjct: 179 ISKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKDRDEVIGNQ 238

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PF+QVEFD++YGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 239 TRVKVVKNKLAPPFRQVEFDVIYGEGVSKMGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 298

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           REN+K FLREN EIA  IE  +RQNAGL++D+++    +   D+A  DD
Sbjct: 299 RENAKQFLRENPEIAAEIELAIRQNAGLLSDAIIDPDGV---DEAGLDD 344


>gi|49475766|ref|YP_033807.1| recombinase A [Bartonella henselae str. Houston-1]
 gi|59798263|sp|Q6G2Z3|RECA_BARHE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|49238573|emb|CAF27814.1| recA protein [Bartonella henselae str. Houston-1]
          Length = 347

 Score =  535 bits (1379), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 259/345 (75%), Positives = 304/345 (88%), Gaps = 2/345 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK KAL+AALSQI+R +GKG+IM+LG +  + E IE + +GSL LDIALG+GG PKGRI
Sbjct: 1   MDKIKALDAALSQIERSFGKGSIMRLGQKEQVVE-IETIPTGSLSLDIALGVGGLPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH IA++QK GG CAF+DAEHALD IYARKLGVDL+NL ISQPDT
Sbjct: 60  VEIYGPESSGKTTLALHAIAEAQKNGGVCAFIDAEHALDPIYARKLGVDLENLFISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEIT+ LVRSGAVD++V+DSVAALTPRAEI+G+MG++LPG+QARLMS+ALRKLT+S
Sbjct: 120 GEQALEITETLVRSGAVDVLVVDSVAALTPRAEIDGEMGDALPGLQARLMSKALRKLTAS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIKD+D I GNQ
Sbjct: 180 IFRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKDRDMIVGNQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDI+YGEGIS  GELIDLGVK   V+KSG+WFS+  QRLGQG
Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIIYGEGISKLGELIDLGVKVGTVEKSGSWFSYNSQRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP-AINTKDD 353
           REN+K FLRE+ EIA  IE+ LRQNAGL+A  LL+   + NT+ D
Sbjct: 300 RENAKQFLREHPEIATEIETALRQNAGLIAIELLENAGSENTESD 344


>gi|207366322|emb|CAQ58056.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366326|emb|CAQ58058.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366356|emb|CAQ58073.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366358|emb|CAQ58074.1| recombinase A [Agrobacterium tumefaciens]
          Length = 323

 Score =  535 bits (1378), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 255/319 (79%), Positives = 293/319 (91%), Gaps = 1/319 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ
Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQ 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301

Query: 310 RENSKIFLRENIEIAENIE 328
           REN+KIFLR+N E A  IE
Sbjct: 302 RENAKIFLRDNPETANEIE 320


>gi|217979628|ref|YP_002363775.1| recA protein [Methylocella silvestris BL2]
 gi|217505004|gb|ACK52413.1| recA protein [Methylocella silvestris BL2]
          Length = 355

 Score =  535 bits (1378), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 253/334 (75%), Positives = 300/334 (89%), Gaps = 1/334 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE V +GSLGLD+ALG+GG P+GR+
Sbjct: 14  VDKTKALDAALSQIERAFGKGSIMRLGKNQKVVE-IETVPTGSLGLDVALGVGGLPRGRV 72

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTL LH IA++QK GG CAF+DAEHALD+IYARKLGV+L++LL+SQPDT
Sbjct: 73  VEIYGPESSGKTTLTLHVIAEAQKKGGVCAFIDAEHALDTIYARKLGVNLEDLLVSQPDT 132

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+S PG+QARLMSQALRKLT+S
Sbjct: 133 GEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSQPGLQARLMSQALRKLTAS 192

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ISRS  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+GSIKD + + GNQ
Sbjct: 193 ISRSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGSIKDHEEVIGNQ 252

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEGIS  GELIDLGVKA +V+KSGAWFS+  QRLGQG
Sbjct: 253 TRVKVVKNKVAPPFKQVEFDIMYGEGISKIGELIDLGVKAGVVEKSGAWFSYDSQRLGQG 312

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343
           RENSK FL+ + EIA+ IE  +R+NAG++AD +L
Sbjct: 313 RENSKAFLKAHPEIADKIELAIRENAGMIADKIL 346


>gi|182679357|ref|YP_001833503.1| recA protein [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182635240|gb|ACB96014.1| recA protein [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 343

 Score =  535 bits (1378), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 254/345 (73%), Positives = 307/345 (88%), Gaps = 2/345 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KAL+AALSQI+R +GKG+IM+LG      E IE +S+GSLGLDIALG+GG P+GR+
Sbjct: 1   MDKTKALDAALSQIERAFGKGSIMRLGKSQKAIE-IETISTGSLGLDIALGVGGLPRGRV 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTL LH IA++QK GG CAF+DAEHALD +YARKLGV+L +LLISQPDT
Sbjct: 60  IEIYGPESSGKTTLTLHVIAEAQKKGGVCAFIDAEHALDPVYARKLGVNLDDLLISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG++ PG+QARLMSQALRKLT+S
Sbjct: 120 GEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDNQPGLQARLMSQALRKLTAS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ISRS+ +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+GSIKD++ ITGNQ
Sbjct: 180 ISRSQTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGSIKDREDITGNQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEG+S  GEL+DLGVKA +V+KSGAWFS+  QRLGQG
Sbjct: 240 TRVKVVKNKVAPPFKQVEFDIMYGEGVSKVGELVDLGVKAGVVEKSGAWFSYDSQRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           REN+K FL+ N E+A+ IE  +R+N+GL+AD +L + A   +DDA
Sbjct: 300 RENAKTFLKNNPEVADKIEMTIRENSGLIADRILDQ-AEPEEDDA 343


>gi|207366324|emb|CAQ58057.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366354|emb|CAQ58072.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366360|emb|CAQ58075.1| recombinase A [Agrobacterium tumefaciens]
          Length = 323

 Score =  534 bits (1376), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 254/319 (79%), Positives = 293/319 (91%), Gaps = 1/319 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ
Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301

Query: 310 RENSKIFLRENIEIAENIE 328
           REN+KIFLR+N E A  IE
Sbjct: 302 RENAKIFLRDNPETANEIE 320


>gi|207366288|emb|CAQ58039.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366290|emb|CAQ58040.1| recombinase A [Agrobacterium tumefaciens]
          Length = 323

 Score =  534 bits (1376), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 254/319 (79%), Positives = 293/319 (91%), Gaps = 1/319 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ
Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301

Query: 310 RENSKIFLRENIEIAENIE 328
           REN+K FLR+N E A  IE
Sbjct: 302 RENAKTFLRDNPETANEIE 320


>gi|144123|gb|AAA22999.1| RecA protein [Brucella abortus]
          Length = 360

 Score =  534 bits (1375), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 256/340 (75%), Positives = 301/340 (88%), Gaps = 2/340 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG P
Sbjct: 10  EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGV L+NLLIS
Sbjct: 69  KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVHLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QP TGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+S  G+QARLMSQA+RK
Sbjct: 129 QPITGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDS-HGLQARLMSQAVRK 187

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 188 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 247

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 248 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 307

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           LGQGREN+K +L++N E+A  IE+ LRQNAGL+A+  L +
Sbjct: 308 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDD 347


>gi|207366292|emb|CAQ58041.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366294|emb|CAQ58042.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366296|emb|CAQ58043.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366298|emb|CAQ58044.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366300|emb|CAQ58045.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366302|emb|CAQ58046.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366304|emb|CAQ58047.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366306|emb|CAQ58048.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366308|emb|CAQ58049.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366310|emb|CAQ58050.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366312|emb|CAQ58051.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366348|emb|CAQ58069.1| recombinase A [Agrobacterium tumefaciens]
          Length = 323

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 254/319 (79%), Positives = 292/319 (91%), Gaps = 1/319 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ
Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301

Query: 310 RENSKIFLRENIEIAENIE 328
           REN+K FLR+N E A  IE
Sbjct: 302 RENAKTFLRDNPETANEIE 320


>gi|218325541|emb|CAV24649.1| recombinase A [Agrobacterium tumefaciens]
          Length = 323

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 254/319 (79%), Positives = 292/319 (91%), Gaps = 1/319 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VD SKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDXSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ
Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQ 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301

Query: 310 RENSKIFLRENIEIAENIE 328
           REN+KIFLR+N E A  IE
Sbjct: 302 RENAKIFLRDNPETANEIE 320


>gi|207366346|emb|CAQ58068.1| recombinase A [Agrobacterium tumefaciens]
          Length = 323

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 253/319 (79%), Positives = 292/319 (91%), Gaps = 1/319 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ
Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301

Query: 310 RENSKIFLRENIEIAENIE 328
           REN+K FLR+N E A  IE
Sbjct: 302 RENAKTFLRDNPETANEIE 320


>gi|207366280|emb|CAQ58035.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366286|emb|CAQ58038.1| recombinase A [Agrobacterium tumefaciens]
          Length = 323

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 253/322 (78%), Positives = 294/322 (91%), Gaps = 1/322 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ
Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLL 331
           REN+K FLR+N + A  IE  L
Sbjct: 302 RENAKTFLRDNPDTANEIEPAL 323


>gi|207366328|emb|CAQ58059.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366330|emb|CAQ58060.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366332|emb|CAQ58061.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366334|emb|CAQ58062.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366336|emb|CAQ58063.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366338|emb|CAQ58064.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366340|emb|CAQ58065.1| recombinase A [Agrobacterium tumefaciens]
          Length = 323

 Score =  532 bits (1370), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 253/319 (79%), Positives = 293/319 (91%), Gaps = 1/319 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ
Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301

Query: 310 RENSKIFLRENIEIAENIE 328
           REN+K FLR+N + A  IE
Sbjct: 302 RENAKTFLRDNPDTANEIE 320


>gi|283481769|emb|CBA10139.1| recombinase A [Agrobacterium larrymoorei]
          Length = 323

 Score =  532 bits (1370), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 255/324 (78%), Positives = 294/324 (90%), Gaps = 1/324 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKG
Sbjct: 1   NSVDKSKALEAALSQIERSFGKGSIMKLGSNENVIE-VETVSTGSLSLDIALGIGGLPKG 59

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQP
Sbjct: 60  RIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQP 119

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT
Sbjct: 120 DTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLT 179

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           +SIS+SK +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + G
Sbjct: 180 ASISKSKTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVG 239

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           NQTRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLG
Sbjct: 240 NQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLG 299

Query: 308 QGRENSKIFLRENIEIAENIESLL 331
           QGREN+K FLR+N  +A  IE  L
Sbjct: 300 QGRENAKGFLRDNPAVANEIEMAL 323


>gi|207366278|emb|CAQ58034.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366342|emb|CAQ58066.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366344|emb|CAQ58067.1| recombinase A [Agrobacterium tumefaciens]
 gi|255287394|emb|CAQ58036.2| recombinase A [Agrobacterium tumefaciens]
          Length = 323

 Score =  531 bits (1369), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 252/319 (78%), Positives = 293/319 (91%), Gaps = 1/319 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ
Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301

Query: 310 RENSKIFLRENIEIAENIE 328
           REN+K FLR+N + A  IE
Sbjct: 302 RENAKTFLRDNPDTANEIE 320


>gi|255287396|emb|CAQ58037.2| recombinase A [Agrobacterium tumefaciens]
          Length = 320

 Score =  531 bits (1369), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 252/319 (78%), Positives = 293/319 (91%), Gaps = 1/319 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ
Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301

Query: 310 RENSKIFLRENIEIAENIE 328
           REN+K FLR+N + A  IE
Sbjct: 302 RENAKTFLRDNPDTANEIE 320


>gi|207366318|emb|CAQ58054.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366320|emb|CAQ58055.1| recombinase A [Agrobacterium tumefaciens]
          Length = 323

 Score =  531 bits (1369), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 253/319 (79%), Positives = 292/319 (91%), Gaps = 1/319 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ
Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301

Query: 310 RENSKIFLRENIEIAENIE 328
           REN+K FLR+N + A  IE
Sbjct: 302 RENAKTFLRDNPDTANEIE 320


>gi|319408737|emb|CBI82394.1| RecA protein [Bartonella schoenbuchensis R1]
          Length = 347

 Score =  531 bits (1368), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 255/345 (73%), Positives = 305/345 (88%), Gaps = 2/345 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KAL++ALSQI+R +GKG+IM+LG +  + E IE + +GSL LDIALG+GG PKGRI
Sbjct: 1   MDKTKALDSALSQIERSFGKGSIMRLGQKEQVVE-IETIPTGSLSLDIALGVGGLPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALH IA++QK+GG CAFVDAEHALD IYARKLGV L++LLISQPDT
Sbjct: 60  IEIYGPESSGKTTLALHAIAEAQKSGGVCAFVDAEHALDPIYARKLGVKLEDLLISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + LVRSGA+D++V+DSVAALTPRAEI+G+M +S+PG+QARLMS+ALRKLT+S
Sbjct: 120 GEQALEIAETLVRSGAIDVLVVDSVAALTPRAEIDGEMNDSVPGLQARLMSKALRKLTAS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRRVG+IKD+D + GNQ
Sbjct: 180 IFRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGAIKDRDMVIGNQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDI+YGEGIS  GELIDLGVKA IV+KSG+WFS+  QRLGQG
Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIIYGEGISKVGELIDLGVKAGIVEKSGSWFSYNSQRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI-NTKDD 353
           REN+K FL EN EIA  IES LRQNAGL+A  LL+   + NT+ +
Sbjct: 300 RENAKQFLHENAEIATEIESALRQNAGLLAIELLENAGLENTESE 344


>gi|254692312|emb|CBA10404.1| recombinase A [Agrobacterium larrymoorei]
          Length = 323

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 254/322 (78%), Positives = 293/322 (90%), Gaps = 1/322 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVIE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SK +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ
Sbjct: 182 ISKSKTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQ 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLL 331
           REN+K FLR+N  +A  IE  L
Sbjct: 302 RENAKGFLRDNPAVANEIEMAL 323


>gi|323137974|ref|ZP_08073048.1| recA protein [Methylocystis sp. ATCC 49242]
 gi|322396693|gb|EFX99220.1| recA protein [Methylocystis sp. ATCC 49242]
          Length = 356

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 256/352 (72%), Positives = 302/352 (85%), Gaps = 9/352 (2%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDK+KAL+AALSQI+R +GKG+IM+LG      E IE +S+GSLGLDIALG+GG P+GR+
Sbjct: 14  VDKTKALDAALSQIERAFGKGSIMRLGKNQKAVE-IETISTGSLGLDIALGVGGLPRGRV 72

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTL LH IA++QK GG CAFVDAEHALD +YARKLGV+L+ LLISQPDT
Sbjct: 73  VEIYGPESSGKTTLTLHVIAEAQKMGGVCAFVDAEHALDPVYARKLGVNLEELLISQPDT 132

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+  PG+QARLMSQALRKLT+S
Sbjct: 133 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDVQPGLQARLMSQALRKLTAS 192

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I+RS  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR GSIKD+D   GNQ
Sbjct: 193 IARSNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRTGSIKDRDEAIGNQ 252

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEG+S  GELIDLGVKA +V+KSGAWFS+  QRLGQG
Sbjct: 253 TRVKVVKNKVAPPFKQVEFDIMYGEGVSKVGELIDLGVKAGVVEKSGAWFSYDSQRLGQG 312

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           REN+K FLR+N E A  IE  +R+NAGL+A+ +L        D AD D+ ++
Sbjct: 313 RENAKNFLRQNPEAAARIEQAIRENAGLIAERIL--------DVADGDEAED 356


>gi|254470359|ref|ZP_05083763.1| protein RecA [Pseudovibrio sp. JE062]
 gi|211960670|gb|EEA95866.1| protein RecA [Pseudovibrio sp. JE062]
          Length = 354

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 254/337 (75%), Positives = 301/337 (89%), Gaps = 2/337 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N +DK+KAL+AALSQI+R +GKG+IM++G QG   E I+ VS+GSL LDI LGIGG P
Sbjct: 10  EGNQMDKNKALDAALSQIERAFGKGSIMRMG-QGQAVE-IQSVSTGSLSLDIGLGIGGLP 67

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRI+EIYGPESSGKTTLALHT+A +Q+ GG CAFVDAEHALD +YARKLGV++ +LLIS
Sbjct: 68  KGRIIEIYGPESSGKTTLALHTVASAQREGGICAFVDAEHALDPVYARKLGVNIDDLLIS 127

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI D LVRSGA+D++VIDSVAALTP+AE+EG+MG+SLPG+QARLMSQALRK
Sbjct: 128 QPDAGEQALEIADTLVRSGAIDVLVIDSVAALTPKAELEGEMGDSLPGLQARLMSQALRK 187

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SIS+S  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D I
Sbjct: 188 LTASISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDEI 247

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDI+YGEGIS  GEL+DLGVK  IV+KSGAWFS+  QR
Sbjct: 248 VGNQTRVKVVKNKLAPPFKQVEFDIIYGEGISKMGELLDLGVKGGIVEKSGAWFSYNSQR 307

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSL 342
           LGQGRENSK FLREN E+AE IE  +RQNAGL+A+++
Sbjct: 308 LGQGRENSKTFLRENPELAEEIELAIRQNAGLIAEAI 344


>gi|283481767|emb|CBA10138.1| recombinase A [Agrobacterium tumefaciens]
          Length = 317

 Score =  527 bits (1358), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 251/316 (79%), Positives = 289/316 (91%), Gaps = 1/316 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRIVEI
Sbjct: 1   SKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRIVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+
Sbjct: 120 ALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISK 179

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQTRV
Sbjct: 180 SKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQTRV 239

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQGREN
Sbjct: 240 KVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGREN 299

Query: 313 SKIFLRENIEIAENIE 328
           +K FLR+N E A  IE
Sbjct: 300 AKTFLRDNPETANEIE 315


>gi|154248001|ref|YP_001418959.1| recombinase A [Xanthobacter autotrophicus Py2]
 gi|154162086|gb|ABS69302.1| recA protein [Xanthobacter autotrophicus Py2]
          Length = 361

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 250/334 (74%), Positives = 299/334 (89%), Gaps = 1/334 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KAL+AALSQI+R +GKG+IM+LG  G   E IE V +GSLGLDIA+GIGG PKGR+
Sbjct: 14  MDKTKALDAALSQIERHFGKGSIMRLGKGGKALE-IESVPTGSLGLDIAIGIGGLPKGRV 72

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEI+GPESSGKTTLALHT+A++QK GGTCAF+DAEHALD IYARKLGV+L +LLISQPD 
Sbjct: 73  VEIFGPESSGKTTLALHTVAEAQKRGGTCAFIDAEHALDPIYARKLGVNLDDLLISQPDA 132

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++V+DSVAALTPRAE++G+MG+S PGMQARLMSQALRKLT+S
Sbjct: 133 GEQALEIADTLVRSGAIDVLVVDSVAALTPRAELDGEMGDSQPGMQARLMSQALRKLTAS 192

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G IK++D + GNQ
Sbjct: 193 ISKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGMIKERDEVVGNQ 252

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGVKA +V+KSGAWFS   QRLGQG
Sbjct: 253 TRVKVVKNKLAPPFKQVEFDIMYGEGISKTGELLDLGVKAGVVEKSGAWFSHDSQRLGQG 312

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343
           REN+K FL++N EIA  IE+ +RQNAGL+A+ +L
Sbjct: 313 RENAKTFLKQNQEIAGRIEAAIRQNAGLIAEKIL 346


>gi|288958054|ref|YP_003448395.1| recombination protein [Azospirillum sp. B510]
 gi|288910362|dbj|BAI71851.1| recombination protein [Azospirillum sp. B510]
          Length = 359

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 248/341 (72%), Positives = 301/341 (88%), Gaps = 1/341 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DK KAL+AALSQI+R +GKG+IM+LG++ ++ E  EVVS+GSLGLDIALGIGG P
Sbjct: 10  EKDSMDKQKALDAALSQIERAFGKGSIMKLGARENLVE-TEVVSTGSLGLDIALGIGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRIVEIYGPESSGKTTLALH IAQ+QK GGTCAFVDAEHALD  YARKLGV++  LLIS
Sbjct: 69  RGRIVEIYGPESSGKTTLALHAIAQAQKNGGTCAFVDAEHALDPSYARKLGVNIDELLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EG+MG+S  G+ ARLMSQALRK
Sbjct: 129 QPDAGEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDSHVGLHARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SI++S C+++FINQ+R+KIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIKD+D++
Sbjct: 189 LTGSIAKSNCLVIFINQIRLKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKDRDTV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNKMA PF+ VEFDIMYGEG+S  GEL+DLG++A +VDKSGAWFS+ G R
Sbjct: 249 VGNQTRVKVVKNKMAPPFRVVEFDIMYGEGVSKVGELLDLGIQAGVVDKSGAWFSYDGTR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           +GQGREN+K FLR N E+A+ IE+ +R NAGLVAD+++  P
Sbjct: 309 IGQGRENAKTFLRNNPEMADAIEAKIRGNAGLVADAMMGTP 349


>gi|83858788|ref|ZP_00952310.1| recombinase A [Oceanicaulis alexandrii HTCC2633]
 gi|83853611|gb|EAP91463.1| recombinase A [Oceanicaulis alexandrii HTCC2633]
          Length = 360

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 250/349 (71%), Positives = 307/349 (87%), Gaps = 6/349 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK KALEAAL+QI R +GKG++M+LG++    + I+ +S+GSLGLDIALG+GG PKGRI
Sbjct: 14  MDKQKALEAALTQIDRAFGKGSVMKLGAKPD--QDIQAISTGSLGLDIALGVGGLPKGRI 71

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A+ QK+GGT AFVDAEHALD +YARKLGVD+  LL+SQPD 
Sbjct: 72  VEIYGPESSGKTTLALHTVAECQKSGGTAAFVDAEHALDPVYARKLGVDVSELLVSQPDA 131

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++VIDSVAALTPRAE+EGDMG+SLPG+QARLMSQALRKLT+S
Sbjct: 132 GEQALEIADTLVRSGAIDVLVIDSVAALTPRAELEGDMGDSLPGLQARLMSQALRKLTAS 191

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IK++D + GNQ
Sbjct: 192 ISKSKCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKNRDEVIGNQ 251

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PF++VEFDI+YGEGIS  GEL+DLGVK +I++KSG+W+S   +R+GQG
Sbjct: 252 TRVKVVKNKVAPPFREVEFDILYGEGISKTGELLDLGVKGNIIEKSGSWYSHDSERIGQG 311

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           REN++ FL +N EIA+ IE+ +R+NAGL+AD LL  P     +D D DD
Sbjct: 312 RENARQFLLDNPEIADRIEAQVRKNAGLIADELLVGPG----EDDDLDD 356


>gi|60392988|sp|P62209|RECA_AZOLI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|37700516|gb|AAR00257.1| RecA [Azospirillum lipoferum]
          Length = 369

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 246/338 (72%), Positives = 301/338 (89%), Gaps = 1/338 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DK KAL+AALSQI+R +GKG+IM+LG++ ++ E  EV+S+GSLGLDIALGIGG P
Sbjct: 10  EKDSMDKQKALDAALSQIERAFGKGSIMKLGARENLVE-TEVISTGSLGLDIALGIGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALH IAQ+QK GGTCAFVDAEHALD  YARKLGV++  LLIS
Sbjct: 69  KGRIVEIYGPESSGKTTLALHAIAQAQKAGGTCAFVDAEHALDPSYARKLGVNIDELLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EG+MG+++ G+ ARLMSQALRK
Sbjct: 129 QPDAGEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDAMSGLHARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SIS+S C+++FINQ+R+KIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIKD+D++
Sbjct: 189 LTGSISKSNCLVIFINQIRLKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKDRDTV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNKMA PF+ VEFDIMYGEG+S  GEL+DLG++A +VDKSGAWFS+ G R
Sbjct: 249 VGNQTRVKVVKNKMAPPFRVVEFDIMYGEGVSKVGELLDLGIQAGVVDKSGAWFSYDGTR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343
           +GQGREN+K +LR N E+A+ IE+ +R NAGLVAD+++
Sbjct: 309 IGQGRENAKTYLRNNPEMADAIEAKIRGNAGLVADAMM 346


>gi|207366350|emb|CAQ58070.1| recombinase A [Agrobacterium tumefaciens]
          Length = 316

 Score =  525 bits (1353), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 250/315 (79%), Positives = 288/315 (91%), Gaps = 1/315 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRIVEIY
Sbjct: 1   KALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRIVEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGEQA
Sbjct: 60  GPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 LEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 179

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
           KC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQTRVK
Sbjct: 180 KCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQTRVK 239

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQGREN+
Sbjct: 240 VVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGRENA 299

Query: 314 KIFLRENIEIAENIE 328
           K FLR+N E A  IE
Sbjct: 300 KTFLRDNPETANEIE 314


>gi|6225929|sp|Q9ZIQ0|RECA_RHOVI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|3769371|gb|AAC64504.1| RecA protein [Blastochloris viridis]
          Length = 348

 Score =  525 bits (1352), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 248/350 (70%), Positives = 306/350 (87%), Gaps = 5/350 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KAL+AAL+QI+R +GKG+IM+LG  G+  E +E +S+GSLGLDIALGIGG P+GR+
Sbjct: 1   MDKTKALDAALTQIERAFGKGSIMRLGKSGAALE-VETISTGSLGLDIALGIGGLPRGRV 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEI+GPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV+L +LLISQPD 
Sbjct: 60  VEIFGPESSGKTTLALHTVAEAQKKGGVCAFIDAEHALDPLYARKLGVNLDDLLISQPDA 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EG+MG+S PGMQARLMSQALRKLT+S
Sbjct: 120 GEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDSQPGMQARLMSQALRKLTAS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ISRS C+++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D + GNQ
Sbjct: 180 ISRSNCMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEVVGNQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEGIS  GELIDLGVKA +VDKSG+WFS   QR+GQG
Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIMYGEGISKAGELIDLGVKAGVVDKSGSWFSHDSQRIGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           REN K FL+ + ++A  IE+ +RQNAGL+A+ +L     +++D  D +D 
Sbjct: 300 RENVKGFLKGHPDVAGRIEAAIRQNAGLIAERILG----SSEDSEDGEDA 345


>gi|295810384|emb|CBL81076.1| recombinase A [Agrobacterium larrymoorei]
          Length = 316

 Score =  524 bits (1350), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 250/317 (78%), Positives = 290/317 (91%), Gaps = 1/317 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVIE-VETVSTGSLSLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +SK +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQTR
Sbjct: 180 KSKTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQTR 239

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQGRE
Sbjct: 240 VKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGRE 299

Query: 312 NSKIFLRENIEIAENIE 328
           N+K F+R+N  +A  IE
Sbjct: 300 NAKGFVRDNPAVANEIE 316


>gi|295810382|emb|CBL81075.1| recombinase A [Agrobacterium larrymoorei]
          Length = 319

 Score =  524 bits (1350), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 251/320 (78%), Positives = 290/320 (90%), Gaps = 1/320 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVIE-VETVSTGSLSLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +SK +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQTR
Sbjct: 180 KSKTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQTR 239

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQGR 
Sbjct: 240 VKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGRX 299

Query: 312 NSKIFLRENIEIAENIESLL 331
           N+K FLR+N  +A  IE  L
Sbjct: 300 NAKGFLRDNPAVANEIEXAL 319


>gi|75675472|ref|YP_317893.1| recombinase A [Nitrobacter winogradskyi Nb-255]
 gi|123745720|sp|Q3ST50|RECA_NITWN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|74420342|gb|ABA04541.1| RecA protein [Nitrobacter winogradskyi Nb-255]
          Length = 362

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 246/350 (70%), Positives = 302/350 (86%), Gaps = 2/350 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG      + +EV+SSGSLGLDIALG+GG PKGRI
Sbjct: 14  MDKSKALSAALSQIERQFGKGSVMKLGKNDKSMD-VEVISSGSLGLDIALGVGGLPKGRI 72

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VE+YGPESSGKTTLALH +A++QK GG CAF+DAEHALD +YARKLGV++ +LLISQPD 
Sbjct: 73  VEVYGPESSGKTTLALHAVAEAQKKGGICAFIDAEHALDPVYARKLGVNVDDLLISQPDH 132

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD+++IDSVAAL PRAE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 133 GEQALEIADTLVRSGAVDVLIIDSVAALVPRAELEGEMGDALPGLQARLMSQALRKLTAS 192

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I++S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D + GNQ
Sbjct: 193 INKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEVVGNQ 252

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEGIS  GE++DLGVKA IV+KSGAWFS+  QR+GQG
Sbjct: 253 TRVKVVKNKLAPPFKQVEFDIMYGEGISKMGEILDLGVKAGIVEKSGAWFSYDSQRMGQG 312

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ-EPAINTKDDADKDD 358
           REN+K FLR N +I   +E  +RQN+GL+A+ +L   P   T DD   +D
Sbjct: 313 RENAKAFLRANPDITAKVEMAIRQNSGLIAEQILAGSPERETDDDETAED 362


>gi|85715199|ref|ZP_01046183.1| recombinase A [Nitrobacter sp. Nb-311A]
 gi|85698114|gb|EAQ35987.1| recombinase A [Nitrobacter sp. Nb-311A]
          Length = 362

 Score =  522 bits (1344), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 247/350 (70%), Positives = 301/350 (86%), Gaps = 2/350 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG      + +EVVSSGSLGLDIALG+GG PKGRI
Sbjct: 14  MDKSKALSAALSQIERQFGKGSVMKLGKNDKSMD-VEVVSSGSLGLDIALGVGGLPKGRI 72

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VE+YGPESSGKTTLALH +A++QK GG CAF+DAEHALD +YARKLGV++ +LLISQPD 
Sbjct: 73  VEVYGPESSGKTTLALHAVAEAQKKGGICAFIDAEHALDPVYARKLGVNVDDLLISQPDH 132

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD+++IDSVAAL PRAE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 133 GEQALEIADTLVRSGAVDVLIIDSVAALVPRAELEGEMGDALPGLQARLMSQALRKLTAS 192

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I++S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D + GNQ
Sbjct: 193 INKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEVVGNQ 252

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEGIS  GE++DLGVKA IV+KSGAWFS+  QR+GQG
Sbjct: 253 TRVKVVKNKLAPPFKQVEFDIMYGEGISKMGEILDLGVKAGIVEKSGAWFSYDSQRMGQG 312

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ-EPAINTKDDADKDD 358
           REN+K FLR N +I   +E  +RQN+GL+A+ +L   P   T DD    D
Sbjct: 313 RENAKAFLRANPDITAKVEMAIRQNSGLIAEQILAGSPERETDDDETAGD 362


>gi|304321908|ref|YP_003855551.1| recombinase A [Parvularcula bermudensis HTCC2503]
 gi|303300810|gb|ADM10409.1| recombinase A [Parvularcula bermudensis HTCC2503]
          Length = 360

 Score =  522 bits (1344), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 251/340 (73%), Positives = 298/340 (87%), Gaps = 1/340 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKALEAALSQI + +GKG++M+LGSQ  I + IE +S+GSLGLDIALGIGG PKGRI
Sbjct: 12  MDKSKALEAALSQIDKAFGKGSVMKLGSQDKIVQ-IEGISTGSLGLDIALGIGGLPKGRI 70

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH  A+SQK GGT AF+DAEHALD IYA KLGV L  LLISQPDT
Sbjct: 71  VEIYGPESSGKTTLALHCAAESQKAGGTAAFIDAEHALDPIYASKLGVKLDELLISQPDT 130

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++VIDSVAALTP+AE+EG+MG+SLPG+QARLMSQALRKLT S
Sbjct: 131 GEQALEIADTLVRSGAIDVLVIDSVAALTPKAELEGEMGDSLPGLQARLMSQALRKLTGS 190

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K +D + GNQ
Sbjct: 191 ISRSNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGALKARDEVIGNQ 250

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGV  +IV+KSG+W+S+  +R+GQG
Sbjct: 251 TRVKVVKNKVAPPFKQVEFDIMYGEGISKVGELLDLGVLGNIVEKSGSWYSYNSERIGQG 310

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
           R+N+K FL++N +IA  IE  +R+NAGL+AD +L  P  N
Sbjct: 311 RDNAKSFLKDNPDIAAAIEQAVRRNAGLIADDMLVGPKDN 350


>gi|148256739|ref|YP_001241324.1| recombinase A [Bradyrhizobium sp. BTAi1]
 gi|146408912|gb|ABQ37418.1| RecA protein [Bradyrhizobium sp. BTAi1]
          Length = 362

 Score =  521 bits (1343), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 246/349 (70%), Positives = 304/349 (87%), Gaps = 4/349 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG      + +E VS+GSLGLDIALGIGG PKGR+
Sbjct: 14  MDKSKALSAALSQIERQFGKGSVMKLGKNDRSMD-VETVSTGSLGLDIALGIGGLPKGRV 72

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 73  IEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 132

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+S
Sbjct: 133 GEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTAS 192

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I++S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+S+RLDIRR+G+IK++D + GN 
Sbjct: 193 INKSHTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASIRLDIRRIGAIKERDEVIGNT 252

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEG+S  GE++DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 253 TRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSYDSQRLGQG 312

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           RENSK FL+ N ++   IE+ +RQN+GL+A+ +L   A N + DAD ++
Sbjct: 313 RENSKSFLKANPDMTAKIEAAIRQNSGLIAEQIL---AGNAERDADGEE 358


>gi|330993236|ref|ZP_08317172.1| Protein recA [Gluconacetobacter sp. SXCC-1]
 gi|329759638|gb|EGG76146.1| Protein recA [Gluconacetobacter sp. SXCC-1]
          Length = 348

 Score =  521 bits (1343), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 249/337 (73%), Positives = 298/337 (88%), Gaps = 2/337 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKALE ALSQI+R +GKG+IM++G + S  E ++V+S+GSLGLDIALGIGG P+GRI
Sbjct: 7   IDKSKALEGALSQIERAFGKGSIMRMGERPS--EQVDVISTGSLGLDIALGIGGLPRGRI 64

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH IA++Q+ GGTCAF+DAEHALD  YARKLGVD+ NLLISQPD 
Sbjct: 65  VEIYGPESSGKTTMALHAIAEAQRKGGTCAFIDAEHALDPGYARKLGVDVDNLLISQPDA 124

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT S
Sbjct: 125 GEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGS 184

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +SRS  +L+F+NQ+R+KIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDKD +TGNQ
Sbjct: 185 VSRSNTMLIFLNQIRLKIGVMFGSPETTTGGNALKFYASVRMDIRRIGSIKDKDEVTGNQ 244

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PF+QVEFDIMYGEGIS  GELIDLGVKA IV+KSGAWFS   QR+GQG
Sbjct: 245 TRVKVVKNKMAPPFRQVEFDIMYGEGISKVGELIDLGVKAGIVEKSGAWFSCDSQRIGQG 304

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           REN+K FLR++ E+A +IE  +R+ AG+VA+++L  P
Sbjct: 305 RENAKQFLRDHPEMAADIERRVREQAGVVAEAMLVGP 341


>gi|209964227|ref|YP_002297142.1| RecA protein [Rhodospirillum centenum SW]
 gi|226723637|sp|B6IS93|RECA_RHOCS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|209957693|gb|ACI98329.1| RecA protein [Rhodospirillum centenum SW]
          Length = 358

 Score =  521 bits (1342), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 242/337 (71%), Positives = 297/337 (88%), Gaps = 1/337 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK KAL+AAL QI+R +GKG+IM+LG++ ++ E  E +S+GSLGLDIALGIGG P+GRI
Sbjct: 13  MDKQKALDAALGQIERAFGKGSIMKLGAREAMAE-TEAISTGSLGLDIALGIGGLPRGRI 71

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH IA++QK GGTCAFVDAEHALD  YARKLGVD+  LLISQPD 
Sbjct: 72  VEIYGPESSGKTTLALHAIAEAQKAGGTCAFVDAEHALDPAYARKLGVDVDELLISQPDA 131

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EG+MG+S  G+ ARLMSQALRKLT S
Sbjct: 132 GEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDSHVGLHARLMSQALRKLTGS 191

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S+C+++FINQ+R+KIGVMFG+PETTTGGNALKFY+S+RLDIRR+G+IKD+D++ GNQ
Sbjct: 192 ISKSRCLVIFINQIRLKIGVMFGNPETTTGGNALKFYASIRLDIRRIGAIKDRDNVVGNQ 251

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PF+ VEFDIMYGEG+S  GEL+DLG++A +V+KSGAWFS+ GQR+GQG
Sbjct: 252 TRVKVVKNKMAPPFRVVEFDIMYGEGVSKVGELLDLGIQAGVVEKSGAWFSYDGQRIGQG 311

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           REN+K FLR N  +AE IE+ +R NAGLVA +++  P
Sbjct: 312 RENAKTFLRNNAAVAEAIEAKVRANAGLVASAMMGAP 348


>gi|163852021|ref|YP_001640064.1| recA protein [Methylobacterium extorquens PA1]
 gi|218530775|ref|YP_002421591.1| recA protein [Methylobacterium chloromethanicum CM4]
 gi|240139288|ref|YP_002963763.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Methylobacterium extorquens AM1]
 gi|254561744|ref|YP_003068839.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Methylobacterium extorquens DM4]
 gi|163663626|gb|ABY30993.1| recA protein [Methylobacterium extorquens PA1]
 gi|218523078|gb|ACK83663.1| recA protein [Methylobacterium chloromethanicum CM4]
 gi|240009260|gb|ACS40486.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Methylobacterium extorquens AM1]
 gi|254269022|emb|CAX24983.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Methylobacterium extorquens DM4]
          Length = 366

 Score =  521 bits (1341), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 260/346 (75%), Positives = 305/346 (88%), Gaps = 2/346 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKSKA+EAAL+QI+R +GKG+IM+LG    + E +E +S+GSLGLDIALG+GG P+GR+V
Sbjct: 20  DKSKAIEAALTQIERAFGKGSIMRLGKSDKVQE-VETISTGSLGLDIALGVGGLPRGRVV 78

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGV+L +LLISQPDTG
Sbjct: 79  EIYGPESSGKTTLALHTIAEAQKKGGVCAFVDAEHALDPVYARKLGVNLDDLLISQPDTG 138

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MGES PG+QARLMSQALRKLT SI
Sbjct: 139 EQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGESQPGLQARLMSQALRKLTGSI 198

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SRS C+++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRRV ++KD+D   GN  
Sbjct: 199 SRSNCMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRVSTLKDRDEAIGNSV 258

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDIM+GEG+S  GELIDLGVKA IV+KSGAWFS+  QRLGQGR
Sbjct: 259 RVKVVKNKVAPPFKQVEFDIMFGEGVSKVGELIDLGVKAGIVEKSGAWFSYDSQRLGQGR 318

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           ENSK FLR+N +IA  IE+ +RQN+GLVAD +L E A  T DD D+
Sbjct: 319 ENSKGFLRDNPDIANKIEASIRQNSGLVADRIL-ETAKPTADDLDE 363


>gi|209542693|ref|YP_002274922.1| recA protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530370|gb|ACI50307.1| recA protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 350

 Score =  521 bits (1341), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 245/337 (72%), Positives = 296/337 (87%), Gaps = 2/337 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKALE ALSQI+R +GKG++M+LG + +  E ++V+S+GSLGLDIALGIGG P+GRI
Sbjct: 7   IDKSKALEGALSQIERAFGKGSVMRLGQRAN--EAVDVISTGSLGLDIALGIGGLPRGRI 64

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH IA++QK GG CAF+DAEHALD  YARKLGVD+ NLLISQPD 
Sbjct: 65  VEIYGPESSGKTTLALHAIAEAQKKGGVCAFIDAEHALDPGYARKLGVDVDNLLISQPDA 124

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT +
Sbjct: 125 GEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGT 184

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +SRS  +++F+NQ+R+KIGVMFGSPETTTGGNALKFY+SVR+DIRR+G IKDKD + GNQ
Sbjct: 185 VSRSNTMMIFLNQIRLKIGVMFGSPETTTGGNALKFYASVRMDIRRIGQIKDKDEVVGNQ 244

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PF+QVEFDI+YGEGIS  GELIDLGVKA IV+KSGAWFS+  QR+GQG
Sbjct: 245 TRVKVVKNKMAPPFRQVEFDIVYGEGISKMGELIDLGVKAGIVEKSGAWFSYDSQRIGQG 304

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           RENSK +LRE+ E+A +IE  +R+ AG+VA+++L  P
Sbjct: 305 RENSKQYLREHPEMAADIERRVREQAGVVAEAMLVSP 341


>gi|114569557|ref|YP_756237.1| recA protein [Maricaulis maris MCS10]
 gi|114340019|gb|ABI65299.1| RecA protein [Maricaulis maris MCS10]
          Length = 359

 Score =  521 bits (1341), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 250/351 (71%), Positives = 307/351 (87%), Gaps = 4/351 (1%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           + E N+ DK KA+EAALSQI + +GKG++M+LG + ++   IE +S+GSLGLDIALGIGG
Sbjct: 10  KNEKNM-DKEKAIEAALSQIDKAFGKGSVMKLGQKPAME--IETISTGSLGLDIALGIGG 66

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            PKGRI+EIYGPESSGKTTLALHT+A++QK GG  AFVDAEHALD +YA KLGVDL  LL
Sbjct: 67  LPKGRIIEIYGPESSGKTTLALHTVAEAQKAGGVAAFVDAEHALDPVYAGKLGVDLGELL 126

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           ISQPDTGEQALEI D LVRSGA+DI+VIDSVAALTPRAE+EG+MG+SLPG+QARLMSQAL
Sbjct: 127 ISQPDTGEQALEIADTLVRSGAIDILVIDSVAALTPRAELEGEMGDSLPGLQARLMSQAL 186

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT SIS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IK++D
Sbjct: 187 RKLTGSISKSKCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKNRD 246

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GNQTRVKVVKNK+A PF++VEFDI+YGEGIS  GELIDLGVK  +++KSG+W+S+  
Sbjct: 247 EVIGNQTRVKVVKNKVAPPFREVEFDILYGEGISKMGELIDLGVKGDVIEKSGSWYSYNS 306

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           +R+GQGREN++ FL E+ +IA +IE+ +R NAGL+AD +L  P +  +DDA
Sbjct: 307 ERIGQGRENARQFLLEHGDIAADIEARVRSNAGLIADEMLTGPDL-AEDDA 356


>gi|146341855|ref|YP_001206903.1| recombinase A [Bradyrhizobium sp. ORS278]
 gi|146194661|emb|CAL78686.1| Recombinase A (recA) [Bradyrhizobium sp. ORS278]
          Length = 362

 Score =  521 bits (1341), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 248/349 (71%), Positives = 303/349 (86%), Gaps = 4/349 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG      + +E VS+GSLGLDIALGIGG PKGRI
Sbjct: 14  MDKSKALSAALSQIERQFGKGSVMKLGKNDRSMD-VETVSTGSLGLDIALGIGGLPKGRI 72

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 73  VEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 132

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+S
Sbjct: 133 GEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTAS 192

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I++S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D + GN 
Sbjct: 193 INKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEVIGNT 252

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEG+S  GE++DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 253 TRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSYDSQRLGQG 312

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           RENSK FL+ N ++   IE+ +RQN+GL+A+ +L   A   + DAD ++
Sbjct: 313 RENSKSFLKANPDMTAKIEAAIRQNSGLIAEQILAGAA---ERDADGEE 358


>gi|299131743|ref|ZP_07024938.1| recA protein [Afipia sp. 1NLS2]
 gi|298591880|gb|EFI52080.1| recA protein [Afipia sp. 1NLS2]
          Length = 360

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 242/334 (72%), Positives = 298/334 (89%), Gaps = 1/334 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KAL AALSQI+R +GKG++M+LG      + IEV+SSGSLGLDIALG+GG PKGR+
Sbjct: 14  MDKTKALTAALSQIERQFGKGSVMRLGKADRSMD-IEVISSGSLGLDIALGVGGLPKGRV 72

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GGTCAF+DAEHALD +YARKLGV++  LLISQPD 
Sbjct: 73  VEIYGPESSGKTTLALHTVAEAQKKGGTCAFIDAEHALDPVYARKLGVNVDELLISQPDH 132

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++++DSVAAL PRAE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 133 GEQALEIADTLVRSGAVDVLIVDSVAALVPRAELEGEMGDALPGLQARLMSQALRKLTAS 192

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I++S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D + GN 
Sbjct: 193 INKSHTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEVIGNS 252

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEG+S  GE++DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 253 TRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSYDSQRLGQG 312

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343
           RENSK FLR+N ++   IE+ +RQN+GL+A+ +L
Sbjct: 313 RENSKAFLRDNPDMTAKIEAAIRQNSGLIAEQIL 346


>gi|209884571|ref|YP_002288428.1| protein RecA [Oligotropha carboxidovorans OM5]
 gi|209872767|gb|ACI92563.1| protein RecA [Oligotropha carboxidovorans OM5]
          Length = 360

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 243/337 (72%), Positives = 298/337 (88%), Gaps = 1/337 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KAL AALSQI+R +GKG++M+LG      + IEV+SSGSLGLDIALG+GG PKGRI
Sbjct: 14  MDKTKALTAALSQIERQFGKGSVMRLGKNDRSMD-IEVISSGSLGLDIALGVGGLPKGRI 72

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH +A++QK GGTCAF+DAEHALD +YARKLGV++ +LLISQPD 
Sbjct: 73  VEIYGPESSGKTTLALHAVAEAQKKGGTCAFIDAEHALDPVYARKLGVNVDDLLISQPDH 132

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++++DSVAAL PRAE+EG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 133 GEQALEIADTLVRSGAVDVLIVDSVAALVPRAELEGEMGDSLPGLQARLMSQALRKLTAS 192

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I++S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR G+IK++D + GN 
Sbjct: 193 INKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRTGAIKERDEVIGNS 252

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEG+S  GE++DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 253 TRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSYDSQRLGQG 312

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           REN+K FLR+N ++   IE+ +RQN+GL+A+ +L  P
Sbjct: 313 RENAKSFLRDNPDMVAKIEAAIRQNSGLIAEQILAGP 349


>gi|154253020|ref|YP_001413844.1| recA protein [Parvibaculum lavamentivorans DS-1]
 gi|189039601|sp|A7HWA4|RECA_PARL1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|154156970|gb|ABS64187.1| recA protein [Parvibaculum lavamentivorans DS-1]
          Length = 365

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 256/350 (73%), Positives = 302/350 (86%), Gaps = 1/350 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+AALSQI+R +GKG+IM+LG    I E IE VS+GSLGLDIALGIGG P+GRI+
Sbjct: 14  DKKKALDAALSQIERSFGKGSIMRLGKNEQIVE-IESVSTGSLGLDIALGIGGLPRGRII 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLAL T+A++QK+GG CAFVDAEHALD IYARKLGV L +LLISQPDTG
Sbjct: 73  EIYGPESSGKTTLALQTVAEAQKSGGVCAFVDAEHALDPIYARKLGVQLDDLLISQPDTG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVD++VIDSVAALTP+AE+EG+MG+SLPG+QARLMSQALRKLT SI
Sbjct: 133 EQALEIADTLVRSGAVDVLVIDSVAALTPKAELEGEMGDSLPGLQARLMSQALRKLTGSI 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D + GNQT
Sbjct: 193 SKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDEVVGNQT 252

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLG KA IV+KSG+WFS+  QR+GQGR
Sbjct: 253 RVKVVKNKVAPPFKQVEFDIMYGEGISKMGELVDLGSKAGIVEKSGSWFSYNSQRIGQGR 312

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           EN+K FLR+N E+A  IE+ +R NAGL+A+ ++  P      D D  D +
Sbjct: 313 ENAKQFLRDNPEMAAEIEAAIRANAGLIAEKIMDVPGSERDGDEDAGDME 362


>gi|27380866|ref|NP_772395.1| recombinase A [Bradyrhizobium japonicum USDA 110]
 gi|37537946|sp|Q89I84|RECA_BRAJA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|27354032|dbj|BAC51020.1| RecA protein [Bradyrhizobium japonicum USDA 110]
          Length = 362

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 247/349 (70%), Positives = 303/349 (86%), Gaps = 4/349 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG      + +E VSSGSLGLDIALGIGG PKGR+
Sbjct: 14  MDKSKALAAALSQIERQFGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRV 72

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 73  VEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 132

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 133 GEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 192

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I++S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D + GN 
Sbjct: 193 INKSHTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEVVGNT 252

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEG+S  GE++DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 253 TRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSYDSQRLGQG 312

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           RENSK FL+ N +I   IE+ +RQN+GL+A+ +L   A   + DAD ++
Sbjct: 313 RENSKAFLKANPDITAKIETAIRQNSGLIAEQIL---AGTPERDADGEE 358


>gi|254292634|ref|YP_003058657.1| recA protein [Hirschia baltica ATCC 49814]
 gi|254041165|gb|ACT57960.1| recA protein [Hirschia baltica ATCC 49814]
          Length = 364

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 250/352 (71%), Positives = 300/352 (85%), Gaps = 2/352 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N +DK KALE AL QI+R +GKG+IM+LG   S+   +E VS+GSL LDIALGIGG P
Sbjct: 10  ENNGMDKQKALETALGQIERNFGKGSIMRLGDNASM--DVEAVSTGSLSLDIALGIGGLP 67

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRI+EIYGPESSGKTTLALH IA++QK GG  AFVDAEHALD IYA KLGVDL +LL+S
Sbjct: 68  KGRIIEIYGPESSGKTTLALHCIAEAQKNGGVAAFVDAEHALDPIYAGKLGVDLGDLLVS 127

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQ+LEI D LVRSGAVD++VIDSVAALTPRAE+EG+MG+SLPG+QARLMSQALRK
Sbjct: 128 QPDTGEQSLEIADTLVRSGAVDVLVIDSVAALTPRAELEGEMGDSLPGLQARLMSQALRK 187

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SIS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++KD+D +
Sbjct: 188 LTGSISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGALKDRDEV 247

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PF+QVEFDI+YGEGIS  GELIDLGVKA +VDK+G+W+S+  +R
Sbjct: 248 IGNQTRVKVVKNKVAPPFRQVEFDIIYGEGISKTGELIDLGVKAGVVDKAGSWYSYGSER 307

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           +GQGREN++ FL+ N  IA  IE  +R +AGL+++ +L     N  D+ D D
Sbjct: 308 IGQGRENARTFLKANPSIAAEIEEKIRADAGLISEEMLAAGQANITDEEDPD 359


>gi|162148079|ref|YP_001602540.1| protein recA (recombinase A) [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161786656|emb|CAP56239.1| Protein recA (Recombinase A) [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 381

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 245/337 (72%), Positives = 296/337 (87%), Gaps = 2/337 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKALE ALSQI+R +GKG++M+LG + +  E ++V+S+GSLGLDIALGIGG P+GRI
Sbjct: 38  IDKSKALEGALSQIERAFGKGSVMRLGQRAN--EAVDVISTGSLGLDIALGIGGLPRGRI 95

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH IA++QK GG CAF+DAEHALD  YARKLGVD+ NLLISQPD 
Sbjct: 96  VEIYGPESSGKTTLALHAIAEAQKKGGVCAFIDAEHALDPGYARKLGVDVDNLLISQPDA 155

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT +
Sbjct: 156 GEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGT 215

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +SRS  +++F+NQ+R+KIGVMFGSPETTTGGNALKFY+SVR+DIRR+G IKDKD + GNQ
Sbjct: 216 VSRSNTMMIFLNQIRLKIGVMFGSPETTTGGNALKFYASVRMDIRRIGQIKDKDEVVGNQ 275

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PF+QVEFDI+YGEGIS  GELIDLGVKA IV+KSGAWFS+  QR+GQG
Sbjct: 276 TRVKVVKNKMAPPFRQVEFDIVYGEGISKMGELIDLGVKAGIVEKSGAWFSYDSQRIGQG 335

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           RENSK +LRE+ E+A +IE  +R+ AG+VA+++L  P
Sbjct: 336 RENSKQYLREHPEMAADIERRVREQAGVVAEAMLVSP 372


>gi|163794127|ref|ZP_02188100.1| RecA protein [alpha proteobacterium BAL199]
 gi|159180741|gb|EDP65260.1| RecA protein [alpha proteobacterium BAL199]
          Length = 360

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 248/356 (69%), Positives = 305/356 (85%), Gaps = 5/356 (1%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DKSKALEAALSQI+R +GKG++M+LG +    E I+ VS+GS+GLDIALGIGG P
Sbjct: 9   EKDGMDKSKALEAALSQIERAFGKGSVMKLGQREGAVE-IDTVSTGSIGLDIALGIGGLP 67

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GR+VEIYGPESSGKTTL+LH +A++QK GGTCAFVDAEHALD IYARKLGVD+  LLIS
Sbjct: 68  RGRVVEIYGPESSGKTTLSLHVVAEAQKAGGTCAFVDAEHALDPIYARKLGVDVDELLIS 127

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEI D LVRSGA+D++V+DSVAAL PRAE+EG+MG++  G+QARLMSQALRK
Sbjct: 128 QPDTGEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDTHVGLQARLMSQALRK 187

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SIS+S+C+++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IKD+D +
Sbjct: 188 LTGSISKSRCMVIFINQIRQKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKDRDEV 247

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PF+ VEFDIMYGEG+S  GEL+DLGV A IV+KSGAWFS  G R
Sbjct: 248 VGNQTRVKVVKNKLAPPFRVVEFDIMYGEGVSKMGELLDLGVNAGIVEKSGAWFSHGGNR 307

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           +GQGREN+K FLR+N ++A+ IE  +R+NAGLVAD++L    +   D  + D  D+
Sbjct: 308 IGQGRENAKTFLRQNPDVAQIIERKIRENAGLVADAML----VGDPDPGEGDSGDD 359


>gi|5103048|dbj|BAA78779.1| RecA protein [Rhodopseudomonas palustris]
          Length = 363

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 245/349 (70%), Positives = 304/349 (87%), Gaps = 4/349 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG      E IE +SSGSLGLDIALG+GG PKGRI
Sbjct: 15  MDKSKALSAALSQIERQFGKGSVMKLGKNDRAME-IETISSGSLGLDIALGVGGLPKGRI 73

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH +A++QK GG CAF+DAEHALD +YARKLGV++ +LLISQPD 
Sbjct: 74  VEIYGPESSGKTTLALHCVAEAQKKGGICAFIDAEHALDPVYARKLGVNVDDLLISQPDH 133

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++++DSVAAL PRAE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 134 GEQALEIADTLVRSGAIDVLIVDSVAALVPRAELEGEMGDALPGLQARLMSQALRKLTAS 193

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I++S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D + GNQ
Sbjct: 194 INKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEVIGNQ 253

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEG+S  GE++DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 254 TRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSYDSQRLGQG 313

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           REN+K FLR N ++   IE+ +RQN+GL+A+ +L   A + + DAD ++
Sbjct: 314 RENAKSFLRSNPDMTAKIEAAIRQNSGLIAEQIL---AGSPERDADGEE 359


>gi|585797|sp|Q08327|RECA_ACEPO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|300185|gb|AAC60438.1| RecA [Gluconacetobacter polyoxogenes]
 gi|391592|dbj|BAA02478.1| RecA protein [Gluconacetobacter polyoxogenes]
          Length = 348

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 247/337 (73%), Positives = 298/337 (88%), Gaps = 2/337 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKALE ALSQI+R +GKG+IM++G + +  E ++V+S+GSLGLDIALGIGG P+GRI
Sbjct: 7   IDKSKALEGALSQIERAFGKGSIMRMGERPT--EQVDVISTGSLGLDIALGIGGLPRGRI 64

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH IA++Q+ GGTCAF+DAEHALD  YARKLGVD+ NLLISQPD 
Sbjct: 65  IEIYGPESSGKTTMALHAIAEAQRKGGTCAFIDAEHALDPGYARKLGVDVDNLLISQPDA 124

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT S
Sbjct: 125 GEQALEIADTLVRSGAVDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGS 184

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +SRS  +L+F+NQ+R+KIGVMFGSPE+TTGGNALKFY+SVR+DIRR+GSIKDKD +TGNQ
Sbjct: 185 VSRSNTMLIFLNQIRLKIGVMFGSPESTTGGNALKFYASVRMDIRRIGSIKDKDEVTGNQ 244

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PF+QVEFDIMYGEGIS  GELIDLGVKA IV+KSGAWFS   QR+GQG
Sbjct: 245 TRVKVVKNKMAPPFRQVEFDIMYGEGISKVGELIDLGVKAGIVEKSGAWFSCDSQRIGQG 304

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           REN+K FLR++ E+A +IE  +R+ AG+VA+++L  P
Sbjct: 305 RENAKQFLRDHPEMAADIERRVREQAGVVAEAMLVGP 341


>gi|92117166|ref|YP_576895.1| recombinase A [Nitrobacter hamburgensis X14]
 gi|123083700|sp|Q1QMW2|RECA_NITHX RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|91800060|gb|ABE62435.1| RecA protein [Nitrobacter hamburgensis X14]
          Length = 362

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 245/334 (73%), Positives = 295/334 (88%), Gaps = 1/334 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG      + IEV+SSGSLGLDIALG+GG PKGR+
Sbjct: 14  MDKSKALSAALSQIERQFGKGSVMKLGKNDKSMD-IEVISSGSLGLDIALGVGGLPKGRV 72

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD IYARKLGV + +LLISQPD 
Sbjct: 73  VEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPIYARKLGVKVDDLLISQPDH 132

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD+++IDSVAAL PRAE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 133 GEQALEIADTLVRSGAVDVLIIDSVAALVPRAELEGEMGDALPGLQARLMSQALRKLTAS 192

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I++S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D + GNQ
Sbjct: 193 INKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEVVGNQ 252

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEGIS  GE++DLGVKA IV+KSGAWFS   QR+GQG
Sbjct: 253 TRVKVVKNKLAPPFKQVEFDIMYGEGISKMGEILDLGVKAGIVEKSGAWFSHDSQRMGQG 312

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343
           REN+K FLR N +I   IE  +RQN+GL+A+ +L
Sbjct: 313 RENAKAFLRANPDITAKIEVAIRQNSGLLAEQIL 346


>gi|258541148|ref|YP_003186581.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-01]
 gi|256632226|dbj|BAH98201.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-01]
 gi|256635283|dbj|BAI01252.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-03]
 gi|256638338|dbj|BAI04300.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-07]
 gi|256641392|dbj|BAI07347.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-22]
 gi|256644447|dbj|BAI10395.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-26]
 gi|256647502|dbj|BAI13443.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-32]
 gi|256650555|dbj|BAI16489.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256653546|dbj|BAI19473.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-12]
          Length = 398

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 243/344 (70%), Positives = 301/344 (87%), Gaps = 2/344 (0%)

Query: 3   YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
           +RK M  +DK+KALE AL QI+R +GKG++M+LG +  +    +V+ +GSLGLDIALGIG
Sbjct: 51  HRKGMVKMDKAKALEGALGQIERAFGKGSVMRLGQRPKVEA--DVIPTGSLGLDIALGIG 108

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G P+GR+VEIYGPESSGKTTLALH IA++QK GGTCAF+DAEHALD  YA+KLGVD+ NL
Sbjct: 109 GLPRGRVVEIYGPESSGKTTLALHAIAEAQKRGGTCAFIDAEHALDPSYAKKLGVDVDNL 168

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           LISQPDTGEQALEI D LVRSGA+D++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQA
Sbjct: 169 LISQPDTGEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQA 228

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           LRKLT +++RS  +++F+NQ+R+KIGVMFG+PETTTGGNALKFYSSVR+DIRR+GSIKDK
Sbjct: 229 LRKLTGTVARSNTLMIFLNQIRLKIGVMFGNPETTTGGNALKFYSSVRMDIRRIGSIKDK 288

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           D +TGNQTRVKVVKNKMA PF+QVEFDIMYGEGIS  GELIDLGVKA +V+KSGAWFS+ 
Sbjct: 289 DEVTGNQTRVKVVKNKMAPPFRQVEFDIMYGEGISKVGELIDLGVKAGVVEKSGAWFSYD 348

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
            QR+GQGREN+K FLR++ E+A +IE  +R++AG+VA++++  P
Sbjct: 349 SQRIGQGRENAKQFLRDHPEMAADIERRVREHAGVVAEAMMVAP 392


>gi|170748646|ref|YP_001754906.1| recA protein [Methylobacterium radiotolerans JCM 2831]
 gi|238688878|sp|B1LWT6|RECA_METRJ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|170655168|gb|ACB24223.1| recA protein [Methylobacterium radiotolerans JCM 2831]
          Length = 363

 Score =  519 bits (1336), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 259/346 (74%), Positives = 305/346 (88%), Gaps = 2/346 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKSKA++AALSQI+R +GKG+IM+LG    + E +E VS+GSLGLDIALG+GG P+GR++
Sbjct: 17  DKSKAIDAALSQIERAFGKGSIMRLGKSDKVQE-VETVSTGSLGLDIALGVGGLPRGRVI 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGV+L +LLISQPDTG
Sbjct: 76  EIYGPESSGKTTLALHTIAEAQKKGGVCAFVDAEHALDPVYARKLGVNLDDLLISQPDTG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MGES PG+QARLMSQALRKLT SI
Sbjct: 136 EQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGESQPGLQARLMSQALRKLTGSI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SRS C+++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+ ++KD+D   GNQ 
Sbjct: 196 SRSNCMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRISTLKDRDEAIGNQV 255

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDIM+GEG+S  GELIDLGVKA IV+KSGAWFS+  QRLGQGR
Sbjct: 256 RVKVVKNKVAPPFKQVEFDIMFGEGVSKVGELIDLGVKAGIVEKSGAWFSYNSQRLGQGR 315

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           ENSK FLR+N +IA  IE  +RQN+GLVA+ +L E A  T DD D+
Sbjct: 316 ENSKGFLRDNPKIAAEIEGSIRQNSGLVAEKIL-ENAAPTADDLDE 360


>gi|312115731|ref|YP_004013327.1| recA protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311220860|gb|ADP72228.1| recA protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 378

 Score =  518 bits (1335), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 247/334 (73%), Positives = 294/334 (88%), Gaps = 1/334 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK KALEAALSQI+R +GKG++M+LG    + E +E +S+GSLGLDIALGIGG P+GR+
Sbjct: 16  MDKQKALEAALSQIERNFGKGSVMRLGKNDKLVE-VEAISTGSLGLDIALGIGGLPRGRV 74

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEI+GPESSGKTTLALH IA++QK GG+C FVDAEHALD  YARKLGV+L+ L+ISQPD 
Sbjct: 75  VEIFGPESSGKTTLALHVIAEAQKKGGSCGFVDAEHALDPGYARKLGVNLEELIISQPDA 134

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+D+IV+DSVAALTP+AEIEG+MG+ LPGMQARLMSQALRKLT S
Sbjct: 135 GEQALEITDTLVRSGAIDVIVVDSVAALTPKAEIEGEMGDVLPGMQARLMSQALRKLTGS 194

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G IK++D + GNQ
Sbjct: 195 ISKSNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGQIKERDEVVGNQ 254

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGVKA+IV+KSG+W+S   QR+GQG
Sbjct: 255 TRVKVVKNKVAPPFKQVEFDIMYGEGISKTGELVDLGVKANIVEKSGSWYSHDSQRIGQG 314

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343
           REN+K FLR N  +AE IE  +R NAGL+A  +L
Sbjct: 315 RENAKAFLRGNPLVAEAIEREIRANAGLIATKIL 348


>gi|188581876|ref|YP_001925321.1| recA protein [Methylobacterium populi BJ001]
 gi|179345374|gb|ACB80786.1| recA protein [Methylobacterium populi BJ001]
          Length = 366

 Score =  518 bits (1335), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 259/346 (74%), Positives = 305/346 (88%), Gaps = 2/346 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKSKA+EAAL+QI+R +GKG+IM+LG    + E +E VS+GSLGLDIALG+GG P+GR++
Sbjct: 20  DKSKAIEAALTQIERAFGKGSIMRLGKTDKVQE-VETVSTGSLGLDIALGVGGLPRGRVI 78

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGV+L +LLISQPDTG
Sbjct: 79  EIYGPESSGKTTLALHTIAEAQKKGGVCAFVDAEHALDPVYARKLGVNLDDLLISQPDTG 138

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MGES PG+QARLMSQALRKLT SI
Sbjct: 139 EQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGESQPGLQARLMSQALRKLTGSI 198

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SRS C+++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRRV ++KD+D   GN  
Sbjct: 199 SRSNCMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRVSTLKDRDEAIGNSV 258

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDIM+GEG+S  GELIDLGVKA IV+KSGAWFS+  QRLGQGR
Sbjct: 259 RVKVVKNKVAPPFKQVEFDIMFGEGVSKVGELIDLGVKAGIVEKSGAWFSYDSQRLGQGR 318

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           ENSK FLR+N +IA  IE+ +RQN+GLVAD +L E A  T +D D+
Sbjct: 319 ENSKGFLRDNPDIANKIEASIRQNSGLVADRIL-ENAKPTAEDLDE 363


>gi|316932870|ref|YP_004107852.1| recA protein [Rhodopseudomonas palustris DX-1]
 gi|315600584|gb|ADU43119.1| recA protein [Rhodopseudomonas palustris DX-1]
          Length = 363

 Score =  518 bits (1333), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 241/334 (72%), Positives = 295/334 (88%), Gaps = 1/334 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG      E IE +SSGSLGLDIALG+GG PKGRI
Sbjct: 15  MDKSKALSAALSQIERQFGKGSVMKLGKNDRAME-IETISSGSLGLDIALGVGGLPKGRI 73

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH +A++QK GG CAF+DAEHALD +YARKLGV++ +LLISQPD 
Sbjct: 74  VEIYGPESSGKTTLALHCVAEAQKKGGICAFIDAEHALDPVYARKLGVNVDDLLISQPDH 133

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++++DSVAAL PRAE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 134 GEQALEIADTLVRSGAIDVLIVDSVAALVPRAELEGEMGDALPGLQARLMSQALRKLTAS 193

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I++S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D + GNQ
Sbjct: 194 INKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEVVGNQ 253

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEG+S  GE++DLGVKA IV+KSGAWFS   QRLGQG
Sbjct: 254 TRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSHDSQRLGQG 313

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343
           REN+K FLR N ++   IE+ +RQN+GL+A+ +L
Sbjct: 314 RENAKAFLRANPDMTAKIEAAIRQNSGLIAEQIL 347


>gi|114797171|ref|YP_761421.1| recA protein [Hyphomonas neptunium ATCC 15444]
 gi|114737345|gb|ABI75470.1| recA protein [Hyphomonas neptunium ATCC 15444]
          Length = 356

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 245/348 (70%), Positives = 301/348 (86%), Gaps = 2/348 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDK KALE AL  I+R +GKG++M+LG + ++   IE VS+GSLGLDIALGIGG PKGRI
Sbjct: 7   VDKQKALETALGNIERSFGKGSVMRLGDKKTL--DIEAVSTGSLGLDIALGIGGLPKGRI 64

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EI+GPESSGKTTL+LH +A++QK GG CAF+DAEHALD +YA KLGVDL +LLISQPDT
Sbjct: 65  IEIFGPESSGKTTLSLHCVAEAQKNGGVCAFIDAEHALDPVYASKLGVDLDDLLISQPDT 124

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++VIDSVAALTPRAEIEG+MG+ LPG+QARLMSQALRKLT S
Sbjct: 125 GEQALEIADTLVRSGAVDLVVIDSVAALTPRAEIEGEMGDQLPGLQARLMSQALRKLTGS 184

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SKC+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G IKD++ + GNQ
Sbjct: 185 ISKSKCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGQIKDREEVIGNQ 244

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PF+QVEFDI+YGEGIS  GEL+DLGVKA++V+KSG+WFS+ G+R+GQG
Sbjct: 245 TRVKVVKNKVAPPFRQVEFDIIYGEGISKTGELVDLGVKANVVEKSGSWFSYNGERIGQG 304

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           RE ++ FL++N  +A  IE  +R+NAGL+A+ LL    +  + D D +
Sbjct: 305 REKARQFLKDNPAVANEIEDAVRRNAGLLAEELLSAGMVAGEGDDDAE 352


>gi|329114759|ref|ZP_08243516.1| Protein RecA [Acetobacter pomorum DM001]
 gi|326695890|gb|EGE47574.1| Protein RecA [Acetobacter pomorum DM001]
          Length = 367

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 242/350 (69%), Positives = 302/350 (86%), Gaps = 2/350 (0%)

Query: 3   YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
           +RK M  +DK+KALE AL QI+R +GKG++M+LG +  +    +V+ +GSLGLDIALGIG
Sbjct: 20  HRKGMVKMDKAKALEGALGQIERAFGKGSVMRLGQRPKVEA--DVIPTGSLGLDIALGIG 77

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G P+GR+VEIYGPESSGKTTLALH IA++QK GGTCAF+DAEHALD  YA+KLGVD+ NL
Sbjct: 78  GLPRGRVVEIYGPESSGKTTLALHAIAEAQKRGGTCAFIDAEHALDPGYAKKLGVDVDNL 137

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           LISQPD GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQA
Sbjct: 138 LISQPDAGEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQA 197

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           LRKLT +++RS  +++F+NQ+R+KIGVMFG+PETTTGGNALKFYSSVR+DIRR+GSIKDK
Sbjct: 198 LRKLTGTVARSNTLMIFLNQIRLKIGVMFGNPETTTGGNALKFYSSVRMDIRRIGSIKDK 257

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           D +TGNQTRVKVVKNKMA PF+QVEFDIMYGEGIS  GELIDLGVKA +V+KSG+WFS+ 
Sbjct: 258 DEVTGNQTRVKVVKNKMAPPFRQVEFDIMYGEGISKVGELIDLGVKAGVVEKSGSWFSYD 317

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
            QR+GQGREN+K FLR++ E+A +IE  +R++AG+VA++++  P  +  D
Sbjct: 318 SQRIGQGRENAKQFLRDHPEMAADIERRVREHAGVVAEAMMVAPEHHEGD 367


>gi|297717870|gb|ADI50078.1| RecA protein [Candidatus Odyssella thessalonicensis L13]
          Length = 349

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 241/349 (69%), Positives = 304/349 (87%), Gaps = 2/349 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+  DK KAL+AALSQI+R +GKG++M+LG + ++   IE +SSGSLGLDIALGIGGFP+
Sbjct: 1   MSTADKGKALDAALSQIERAFGKGSVMRLGQRETVE--IEALSSGSLGLDIALGIGGFPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTTLALH +A++QK GGTCAFVDAEHALD  YARKLGV++ NL+ISQ
Sbjct: 59  GRIIEIYGPESSGKTTLALHAVAEAQKVGGTCAFVDAEHALDPSYARKLGVNIDNLIISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D LVRSGA+D++++DSVAAL P+AE+EGDMG+S  G+QARLMSQALRKL
Sbjct: 119 PDTGEQALEIADTLVRSGAIDVLIVDSVAALVPKAELEGDMGDSHMGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
             SI+++ C+++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIKDKD +T
Sbjct: 179 AGSINKTNCMVIFINQIRQKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKDKDQVT 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GNQTRVKVVKNKMA PFK V+FDIMYGEG+S  GELIDLGV A +V+K+G+W+S   QR+
Sbjct: 239 GNQTRVKVVKNKMAPPFKVVDFDIMYGEGVSKTGELIDLGVSAGVVEKAGSWYSMGSQRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           GQG+E ++ FLR+N +IA  IE+ +R NAGL++D++++    N++D+AD
Sbjct: 299 GQGKEAARQFLRDNPDIANQIETAIRNNAGLLSDNMMRGSESNSEDEAD 347


>gi|86750850|ref|YP_487346.1| recombinase A [Rhodopseudomonas palustris HaA2]
 gi|86573878|gb|ABD08435.1| RecA protein [Rhodopseudomonas palustris HaA2]
          Length = 364

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 244/349 (69%), Positives = 301/349 (86%), Gaps = 4/349 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KAL AALSQI+R +GKG++M+LG      + IE +SSGSLGLDIALG+GG PKGR+
Sbjct: 16  MDKTKALAAALSQIERQFGKGSVMKLGKNDRSMD-IETISSGSLGLDIALGVGGLPKGRV 74

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH  A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPD 
Sbjct: 75  VEIYGPESSGKTTLALHCAAEAQKKGGICAFIDAEHALDPVYARKLGVNVDELLISQPDH 134

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++++DSVAAL PRAE+EGDMG++LPG+QARLMSQALRKLT+S
Sbjct: 135 GEQALEIADTLVRSGAIDVLIVDSVAALVPRAELEGDMGDALPGLQARLMSQALRKLTAS 194

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I++S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G IK++D + GNQ
Sbjct: 195 INKSHTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGQIKERDEVVGNQ 254

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEG+S  GE++DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 255 TRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSYDSQRLGQG 314

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           RENSK FLR N ++   IE+ +RQN+GL+A+ +L   A + + DAD ++
Sbjct: 315 RENSKAFLRANPDMTAKIEASIRQNSGLIAEQIL---AGSPESDADGEE 360


>gi|39936912|ref|NP_949188.1| recombinase A [Rhodopseudomonas palustris CGA009]
 gi|192292742|ref|YP_001993347.1| recombinase A [Rhodopseudomonas palustris TIE-1]
 gi|39650769|emb|CAE29292.1| recombination protein recA [Rhodopseudomonas palustris CGA009]
 gi|192286491|gb|ACF02872.1| recA protein [Rhodopseudomonas palustris TIE-1]
          Length = 363

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 244/349 (69%), Positives = 302/349 (86%), Gaps = 4/349 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG      + IE +SSGSLGLDIALG+GG PKGRI
Sbjct: 15  MDKSKALSAALSQIERQFGKGSVMRLGKNDRSMD-IETISSGSLGLDIALGVGGLPKGRI 73

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH +A++QK GG CAFVDAEHALD +YARKLGV++ +LLISQPD 
Sbjct: 74  VEIYGPESSGKTTLALHCVAEAQKKGGICAFVDAEHALDPVYARKLGVNVDDLLISQPDH 133

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++++DSVAAL PRAE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 134 GEQALEIADTLVRSGAIDVLIVDSVAALVPRAELEGEMGDALPGLQARLMSQALRKLTAS 193

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I++S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G IK++D + GNQ
Sbjct: 194 INKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGQIKERDEVVGNQ 253

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEG+S  GE++DLGVKA IV+KSGAWFS   QRLGQG
Sbjct: 254 TRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSHDSQRLGQG 313

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           REN+K FL+ N ++   IE+ +RQN+GL+A+ +L   A + + DAD ++
Sbjct: 314 RENAKAFLKANPDMTAKIEAAIRQNSGLIAEQIL---AGSPESDADGEE 359


>gi|115523612|ref|YP_780523.1| recombinase A [Rhodopseudomonas palustris BisA53]
 gi|115517559|gb|ABJ05543.1| RecA protein [Rhodopseudomonas palustris BisA53]
          Length = 362

 Score =  515 bits (1327), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 245/349 (70%), Positives = 301/349 (86%), Gaps = 4/349 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG      + +E +S+GSLGLDIALG+GG PKGR+
Sbjct: 14  MDKSKALAAALSQIERQFGKGSVMRLGKNDRSMD-VETISTGSLGLDIALGVGGLPKGRV 72

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH  A++QK GG CAF+DAEHALD IYARKLGV++  LLISQPD 
Sbjct: 73  VEIYGPESSGKTTLALHCAAEAQKKGGICAFIDAEHALDPIYARKLGVNVDELLISQPDH 132

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++++DSVAAL PRAE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 133 GEQALEIADTLVRSGAVDVLIVDSVAALVPRAELEGEMGDALPGLQARLMSQALRKLTAS 192

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I++S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G IK++D + GNQ
Sbjct: 193 INKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGQIKERDEVVGNQ 252

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEG+S  GE++DLGVKA IVDKSGAWFS+  QRLGQG
Sbjct: 253 TRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVDKSGAWFSYDSQRLGQG 312

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           RENSK FL+ N +I   IE+ +RQN+GL+A+ +L   A + + DAD ++
Sbjct: 313 RENSKTFLKGNPDITAKIEAAIRQNSGLIAEQIL---AGSPERDADGEE 358


>gi|90423078|ref|YP_531448.1| recombinase A [Rhodopseudomonas palustris BisB18]
 gi|90105092|gb|ABD87129.1| RecA protein [Rhodopseudomonas palustris BisB18]
          Length = 363

 Score =  515 bits (1327), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 244/349 (69%), Positives = 301/349 (86%), Gaps = 4/349 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KAL AALSQI+R +GKG++M+LG      + IE +SSGSLGLDIALG+GG PKGR+
Sbjct: 15  MDKTKALAAALSQIERQFGKGSVMKLGKNDRSMD-IETISSGSLGLDIALGVGGLPKGRV 73

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH  A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPD 
Sbjct: 74  VEIYGPESSGKTTLALHCAAEAQKKGGICAFIDAEHALDPVYARKLGVNVDELLISQPDH 133

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++++DSVAAL PRAE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 134 GEQALEIADTLVRSGAVDVLIVDSVAALVPRAELEGEMGDALPGLQARLMSQALRKLTAS 193

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I++S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G IK++D + GNQ
Sbjct: 194 INKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGQIKERDEVVGNQ 253

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEG+S  GE++DLGVKA IVDKSGAWFS+  QRLGQG
Sbjct: 254 TRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVDKSGAWFSYDSQRLGQG 313

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           RENSK FL+ N ++   IE+ +RQN+GL+A+ +L   A + + DAD ++
Sbjct: 314 RENSKAFLKANPDMTAKIEAAIRQNSGLIAEQIL---AGSPERDADGEE 359


>gi|83594151|ref|YP_427903.1| recombinase A [Rhodospirillum rubrum ATCC 11170]
 gi|123766962|sp|Q2RQH9|RECA_RHORT RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|83577065|gb|ABC23616.1| RecA protein [Rhodospirillum rubrum ATCC 11170]
          Length = 366

 Score =  515 bits (1326), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 244/347 (70%), Positives = 300/347 (86%), Gaps = 2/347 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           + +DK KALEAA+ QI+R +GKG+IM+LG +GS+ + IE +S+GSLGLDIALGIGG P+G
Sbjct: 12  DTMDKQKALEAAVGQIERAFGKGSIMKLGQRGSVVD-IESISTGSLGLDIALGIGGLPRG 70

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTLALH +A++QK GG CAFVDAEHA D +YARKLGV L +LL+SQP
Sbjct: 71  RIVEIYGPESSGKTTLALHVVAEAQKKGGQCAFVDAEHAFDPLYARKLGVSLDDLLVSQP 130

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D LVRSGA+D++VIDSVAAL P+AE+EGDMG+S  G+QARLMSQALRKLT
Sbjct: 131 DTGEQALEIADTLVRSGAIDVLVIDSVAALVPKAELEGDMGDSHVGLQARLMSQALRKLT 190

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++SRS  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KDK+ + G
Sbjct: 191 GTVSRSNTLIIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDKEEVVG 250

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           NQTRVKVVKNK+A PFK VEFDIMYGEGIS  GE++DLGVKA+I++KSGAWFS+   R+G
Sbjct: 251 NQTRVKVVKNKVAPPFKVVEFDIMYGEGISKLGEMLDLGVKANIIEKSGAWFSYNSTRIG 310

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           QGREN+K FLR+N  +AE IE+ +R NAGL+A+ ++  P     DDA
Sbjct: 311 QGRENAKQFLRDNPAMAEEIENAVRANAGLIAEEMIGGPG-GEDDDA 356


>gi|62288901|sp|Q9XBC1|RECA_RHOPA RecName: Full=Protein RecA; AltName: Full=Recombinase A
          Length = 349

 Score =  515 bits (1326), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 244/349 (69%), Positives = 302/349 (86%), Gaps = 4/349 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG      + IE +SSGSLGLDIALG+GG PKGRI
Sbjct: 1   MDKSKALSAALSQIERQFGKGSVMRLGKNDRSMD-IETISSGSLGLDIALGVGGLPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH +A++QK GG CAFVDAEHALD +YARKLGV++ +LLISQPD 
Sbjct: 60  VEIYGPESSGKTTLALHCVAEAQKKGGICAFVDAEHALDPVYARKLGVNVDDLLISQPDH 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++++DSVAAL PRAE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 120 GEQALEIADTLVRSGAIDVLIVDSVAALVPRAELEGEMGDALPGLQARLMSQALRKLTAS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I++S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G IK++D + GNQ
Sbjct: 180 INKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGQIKERDEVVGNQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEG+S  GE++DLGVKA IV+KSGAWFS   QRLGQG
Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSHDSQRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           REN+K FL+ N ++   IE+ +RQN+GL+A+ +L   A + + DAD ++
Sbjct: 300 RENAKAFLKANPDMTAKIEAAIRQNSGLIAEQIL---AGSPESDADGEE 345


>gi|91976208|ref|YP_568867.1| recombinase A [Rhodopseudomonas palustris BisB5]
 gi|91682664|gb|ABE38966.1| RecA protein [Rhodopseudomonas palustris BisB5]
          Length = 363

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 242/349 (69%), Positives = 301/349 (86%), Gaps = 4/349 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KAL AALSQI+R +GKG++M+LG      + IE +SSGSLGLDIALG+GG PKGR+
Sbjct: 15  MDKTKALTAALSQIERQFGKGSVMRLGKNDRSMD-IETISSGSLGLDIALGVGGLPKGRV 73

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH +A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPD 
Sbjct: 74  VEIYGPESSGKTTLALHCVAEAQKKGGICAFIDAEHALDPVYARKLGVNVDELLISQPDH 133

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++++DSVAAL PRAE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 134 GEQALEIADTLVRSGAIDVLIVDSVAALVPRAELEGEMGDALPGLQARLMSQALRKLTAS 193

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I++S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G IK++D + GNQ
Sbjct: 194 INKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGQIKERDEVVGNQ 253

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEG+S  GE++DLGVKA IVDKSGAWFS   QRLGQG
Sbjct: 254 TRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVDKSGAWFSHDSQRLGQG 313

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           REN+K FL+ N ++   IE+ +RQN+GL+A+ +L   A + + DAD ++
Sbjct: 314 RENAKAFLKANPDLTAKIEASIRQNSGLIAEQIL---AGSPESDADGEE 359


>gi|83309721|ref|YP_419985.1| recombinase A [Magnetospirillum magneticum AMB-1]
 gi|123754202|sp|Q2W9P9|RECA_MAGSA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|82944562|dbj|BAE49426.1| RecA protein [Magnetospirillum magneticum AMB-1]
          Length = 359

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 243/339 (71%), Positives = 295/339 (87%), Gaps = 1/339 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           + +D+ KALEAA+SQI+R +GKG+IM+LG +  + E  EVVS+GSLGLD+ALGIGG P+G
Sbjct: 12  DTMDRQKALEAAVSQIERAFGKGSIMKLGGKDQVVE-TEVVSTGSLGLDVALGIGGVPRG 70

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+E+YGPESSGKTTLALH IA++QK GGTCAFVDAEHALD  YARKLGV+L  LLISQP
Sbjct: 71  RIIEVYGPESSGKTTLALHIIAEAQKKGGTCAFVDAEHALDPSYARKLGVNLDELLISQP 130

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI D LVRSGAVD++V+DSVAAL PRAE+EG+MG++  G+ ARLMSQALRKLT
Sbjct: 131 DAGEQALEIADTLVRSGAVDVLVVDSVAALVPRAELEGEMGDNHMGLHARLMSQALRKLT 190

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            S+S+SK I++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR++IRRVG+IKD+D + G
Sbjct: 191 GSVSKSKTIVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMEIRRVGAIKDRDEVVG 250

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           NQTRVKVVKNK+A PFK V+FDIMYGEGIS  GELIDLGVKA++V+KSGAWFS+   R+G
Sbjct: 251 NQTRVKVVKNKLAPPFKVVDFDIMYGEGISKMGELIDLGVKANVVEKSGAWFSYNSTRIG 310

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           QGREN+K FLREN  +A  IE  +RQNAGL++++L   P
Sbjct: 311 QGRENAKTFLRENPAMAAEIEGAIRQNAGLISEALAGGP 349


>gi|207366362|emb|CAQ58076.1| recombinase A [Agrobacterium tumefaciens]
          Length = 308

 Score =  512 bits (1318), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 242/307 (78%), Positives = 280/307 (91%), Gaps = 1/307 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI+R +GKG IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKT
Sbjct: 1   QIERSFGKGXIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGEQALEITD LV
Sbjct: 60  TLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDTGEQALEITDTLV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+SKC+++FIN
Sbjct: 120 RSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSKCMVIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQTRVKVVKNKMA 
Sbjct: 180 QIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQTRVKVVKNKMAP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQGREN+K+FLR+N 
Sbjct: 240 PFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGRENAKMFLRDNX 299

Query: 322 EIAENIE 328
           E A  IE
Sbjct: 300 ETANEIE 306


>gi|148260042|ref|YP_001234169.1| recA protein [Acidiphilium cryptum JF-5]
 gi|326403005|ref|YP_004283086.1| recombinase A [Acidiphilium multivorum AIU301]
 gi|189039588|sp|A5FXB8|RECA_ACICJ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|146401723|gb|ABQ30250.1| recA protein [Acidiphilium cryptum JF-5]
 gi|325049866|dbj|BAJ80204.1| recombinase A [Acidiphilium multivorum AIU301]
          Length = 343

 Score =  512 bits (1318), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 240/336 (71%), Positives = 299/336 (88%), Gaps = 1/336 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           ++K+KAL+AAL+QI+R +GKG+IM++GS+ S  E I+V+S+GSLGLD+ALGIGG P+GR+
Sbjct: 1   MEKNKALDAALAQIERAFGKGSIMRMGSR-SESEAIDVISTGSLGLDLALGIGGLPRGRV 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALH +A++QK GGTCAFVDAEHALD IYARKLGVD+ NLLISQPDT
Sbjct: 60  IEIYGPESSGKTTLALHAVAEAQKRGGTCAFVDAEHALDPIYARKLGVDVDNLLISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EG+MG+S  G+ ARLMSQALRKLT S
Sbjct: 120 GEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDSHVGLHARLMSQALRKLTGS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ISRSK +++F+NQ+R+KIGVMFG+PETTTGGNALKFY+S+R+DIRR+GSIKD++ +TGNQ
Sbjct: 180 ISRSKTLVIFLNQIRLKIGVMFGNPETTTGGNALKFYASIRMDIRRIGSIKDREEVTGNQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PF+QVEFDIMYGEGIS  GEL+DLGVKA IV+KSGAWFS   QR+GQG
Sbjct: 240 TRVKVVKNKLAPPFRQVEFDIMYGEGISKVGELLDLGVKAGIVEKSGAWFSCDSQRIGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           REN+K FLR+N ++A +IE  +R  A LV  +++ +
Sbjct: 300 RENAKQFLRDNPDVAASIEQRIRAQANLVEAAMITD 335


>gi|220925348|ref|YP_002500650.1| recA protein [Methylobacterium nodulans ORS 2060]
 gi|254790438|sp|B8IP29|RECA_METNO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|219949955|gb|ACL60347.1| recA protein [Methylobacterium nodulans ORS 2060]
          Length = 363

 Score =  511 bits (1317), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 254/346 (73%), Positives = 305/346 (88%), Gaps = 2/346 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKSKA++AAL+QI+R +GKG+IM+LG +G   + +E +S+GSLGLDIALG+GG P+GR++
Sbjct: 17  DKSKAIDAALAQIERAFGKGSIMRLG-KGDKVQEVETISTGSLGLDIALGVGGLPRGRVI 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGV+L +LLISQPDTG
Sbjct: 76  EIYGPESSGKTTLALHTIAEAQKKGGVCAFVDAEHALDPVYARKLGVNLDDLLISQPDTG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+  PG+QARLMSQALRKLT SI
Sbjct: 136 EQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDQQPGLQARLMSQALRKLTGSI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SRS C+++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRRV ++KD+D   GN  
Sbjct: 196 SRSNCMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRVSTLKDRDEPIGNSV 255

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDIM+GEG+S  GELIDLGVKA IV+KSGAWFS+  QRLGQGR
Sbjct: 256 RVKVVKNKVAPPFKQVEFDIMFGEGVSKVGELIDLGVKAGIVEKSGAWFSYDSQRLGQGR 315

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           EN+K FLR+N +IA  IE+ +RQN GLVAD +L E A+ T +D D+
Sbjct: 316 ENAKGFLRDNPDIAGRIEAAIRQNMGLVADKIL-ENAVPTAEDYDE 360


>gi|114328048|ref|YP_745205.1| recombinase A [Granulibacter bethesdensis CGDNIH1]
 gi|84620800|gb|ABC59514.1| RecA [Granulibacter bethesdensis CGDNIH1]
 gi|114316222|gb|ABI62282.1| recA protein [Granulibacter bethesdensis CGDNIH1]
          Length = 351

 Score =  511 bits (1316), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 242/350 (69%), Positives = 304/350 (86%), Gaps = 7/350 (2%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           ++K+KAL+AAL+QI+R +GKG+IM++G++ ++ E IEV+ SGSLGLD+ALGIGG P+GRI
Sbjct: 7   MEKNKALDAALAQIERSFGKGSIMRMGAR-NVAEQIEVIPSGSLGLDLALGIGGMPRGRI 65

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GGTCAFVDAEHALD IYARKLGVD+ NLLISQPD 
Sbjct: 66  VEIYGPESSGKTTLALHTVAEAQKRGGTCAFVDAEHALDPIYARKLGVDVDNLLISQPDA 125

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EG+MG+S  G+ ARLMSQALRKLT S
Sbjct: 126 GEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDSHVGLHARLMSQALRKLTGS 185

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++RS   L+F+NQ+RMKIGVMFGSPETTTGGNALKFY+SVR DIRR+G +KDK+ + GNQ
Sbjct: 186 VNRSNTTLIFLNQIRMKIGVMFGSPETTTGGNALKFYASVRFDIRRIGQLKDKEEVIGNQ 245

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PF+QVEFDI+YGEGIS  GELIDLGVKA++V+KSGAW+S+  QR+GQG
Sbjct: 246 TRVKVVKNKLAPPFRQVEFDIIYGEGISKVGELIDLGVKANVVEKSGAWYSYDSQRIGQG 305

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           REN+K FLR++ EIA  IE+ +R+ +G V ++++  P      DA++ +T
Sbjct: 306 RENAKQFLRDHPEIANAIENRIREQSGTVQNAMITTP------DAEEAET 349


>gi|300023634|ref|YP_003756245.1| recA protein [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525455|gb|ADJ23924.1| recA protein [Hyphomicrobium denitrificans ATCC 51888]
          Length = 377

 Score =  511 bits (1315), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 241/337 (71%), Positives = 293/337 (86%), Gaps = 2/337 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK +ALE AL QI + +GKG+IM+LG+   +   IE + +GSLGLDIALGIGG PKGRI
Sbjct: 14  MDKKQALEHALQQIDKNFGKGSIMRLGANDKV--DIEAIPTGSLGLDIALGIGGLPKGRI 71

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALH +A++QK GG CAF+DAEHA+D  YA+KLGV +++LLISQPDT
Sbjct: 72  IEIYGPESSGKTTLALHVVAEAQKRGGICAFIDAEHAIDPGYAKKLGVKIEDLLISQPDT 131

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++V+DSVAALTP+AE+EG+MG+SLPG+QARLMSQALRKLT S
Sbjct: 132 GEQALEIADTLVRSGAVDVLVVDSVAALTPKAELEGEMGDSLPGLQARLMSQALRKLTGS 191

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SKC++VFINQ+RMKIG+MFG+PETTTGGNALKFY+SVRLDIRR+G IK+++   GNQ
Sbjct: 192 ISKSKCMVVFINQIRMKIGIMFGNPETTTGGNALKFYASVRLDIRRIGQIKEREETVGNQ 251

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEGIS  GELIDLGVKA IV+KSGAW S+ G R+GQG
Sbjct: 252 TRVKVVKNKVAPPFKQVEFDIMYGEGISKVGELIDLGVKAGIVEKSGAWMSYNGDRIGQG 311

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           REN+K +L+EN +IA  IE+ +R NAGL+ + +L  P
Sbjct: 312 RENAKTYLKENPKIAAEIENSIRANAGLIVEKMLVNP 348


>gi|241762016|ref|ZP_04760100.1| recA protein [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|283856414|ref|YP_162901.2| recombinase A [Zymomonas mobilis subsp. mobilis ZM4]
 gi|292495071|sp|Q9X5D8|RECA_ZYMMO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|241373482|gb|EER63069.1| recA protein [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|283775414|gb|AAV89790.2| recA protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 354

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 244/341 (71%), Positives = 295/341 (86%), Gaps = 3/341 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N +DK KALEAAL+QI R +GKG++M+LGS+  I   I+ +SSGSLGLDIALGIGG P+G
Sbjct: 14  NNMDKQKALEAALAQIDRAFGKGSVMRLGSREKI--EIDTISSGSLGLDIALGIGGLPRG 71

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+KLGV+  +L++SQP
Sbjct: 72  RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFVDAEHALDPVYAKKLGVNTDDLIVSQP 131

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEITD L+RS AVDI+V+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T
Sbjct: 132 DTGEQALEITDTLIRSNAVDILVVDSVAALTPRAEIEGEMGDSHVGLQARLMSQALRKIT 191

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            SI+RS+ +++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRRVG IKD+D I G
Sbjct: 192 GSINRSQTLVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRVGQIKDRDEIVG 251

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N TRVKVVKNK+A PFKQVEFDIMYGEG+S  GE++DLGVKA I+DKSG+WFS    R+G
Sbjct: 252 NATRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIIDKSGSWFSHDSVRIG 311

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348
           QGREN+K FLRE+ E+ E IE ++R N   +AD +L +P+I
Sbjct: 312 QGRENAKTFLREHPEMTEKIEKMIRHNTAEIADEML-DPSI 351


>gi|170738641|ref|YP_001767296.1| recA protein [Methylobacterium sp. 4-46]
 gi|238688062|sp|B0UGP0|RECA_METS4 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|168192915|gb|ACA14862.1| recA protein [Methylobacterium sp. 4-46]
          Length = 363

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 253/346 (73%), Positives = 305/346 (88%), Gaps = 2/346 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKSKA++AAL+QI+R +GKG+IM+LG +G   + +E +S+GSLGLD+ALG+GG P+GR++
Sbjct: 17  DKSKAIDAALAQIERAFGKGSIMRLG-KGDKVQEVETISTGSLGLDVALGVGGLPRGRVI 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGV+L +LLISQPDTG
Sbjct: 76  EIYGPESSGKTTLALHTIAEAQKKGGVCAFVDAEHALDPVYARKLGVNLDDLLISQPDTG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+  PG+QARLMSQALRKLT SI
Sbjct: 136 EQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDQQPGLQARLMSQALRKLTGSI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SRS C+++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRRV ++KD+D   GN  
Sbjct: 196 SRSNCMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRVSTLKDRDEPIGNSV 255

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDIM+GEG+S  GELIDLGVKA IV+KSGAWFS+  QRLGQGR
Sbjct: 256 RVKVVKNKVAPPFKQVEFDIMFGEGVSKVGELIDLGVKAGIVEKSGAWFSYDSQRLGQGR 315

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           EN+K FLR+N +IA  IE+ +RQN GLVAD +L E A+ T +D D+
Sbjct: 316 ENAKGFLRDNPDIAGRIEAAIRQNMGLVADKIL-ENAVPTAEDFDE 360


>gi|46200836|ref|ZP_00056375.2| COG0468: RecA/RadA recombinase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 351

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 242/339 (71%), Positives = 294/339 (86%), Gaps = 1/339 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           + +D+ KALEAA+SQI+R +GKG+IM+LG +  + E  EVVS+GSLGLD+ALGIGG P+G
Sbjct: 4   DTMDRQKALEAAVSQIERAFGKGSIMKLGGKDQVVE-TEVVSTGSLGLDVALGIGGVPRG 62

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+E+YGPESSGKTTLALH IA++QK GGTCAFVDAEHALD  YARKLGV L  LLISQP
Sbjct: 63  RIIEVYGPESSGKTTLALHIIAEAQKKGGTCAFVDAEHALDPSYARKLGVALDELLISQP 122

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI D LVRSGAVD++V+DSVAAL PRAE+EG+MG++  G+ ARLMSQALRKLT
Sbjct: 123 DAGEQALEIADTLVRSGAVDVLVVDSVAALVPRAELEGEMGDNHMGLHARLMSQALRKLT 182

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            S+S+SK I++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR++IRRVG+IKD+D + G
Sbjct: 183 GSVSKSKTIVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMEIRRVGAIKDRDEVVG 242

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           NQTRVKVVKNK+A PFK V+FDIMYGEGIS  GELIDLGVKA++V+KSGAWFS+   R+G
Sbjct: 243 NQTRVKVVKNKLAPPFKVVDFDIMYGEGISKMGELIDLGVKANVVEKSGAWFSYNSTRIG 302

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           QGREN+K FLR+N  +A  IE  +RQNAGL++++L   P
Sbjct: 303 QGRENAKQFLRDNPAMAAEIEGAIRQNAGLISEALAAGP 341


>gi|144900462|emb|CAM77326.1| RecA bacterial DNA recombination protein [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 358

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 242/339 (71%), Positives = 296/339 (87%), Gaps = 2/339 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           + +D+ KALEAA+SQI+R +GKG+IM++G + ++    EVVS+GSLGLDIALGIGG P+G
Sbjct: 12  DTMDRQKALEAAVSQIERAFGKGSIMKMGQKETVE--TEVVSTGSLGLDIALGIGGLPRG 69

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EIYGPESSGKTTLALH +A++QK GGTCAF+DAEHALD  YARKLGV+L +LLISQP
Sbjct: 70  RIIEIYGPESSGKTTLALHVLAEAQKKGGTCAFIDAEHALDPSYARKLGVNLDDLLISQP 129

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI D LVRSGAVD++V+DSVAAL PRAE+EG+MG+S  G+ ARLMSQALRKLT
Sbjct: 130 DAGEQALEICDTLVRSGAVDVLVVDSVAALVPRAELEGEMGDSHVGLHARLMSQALRKLT 189

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            S+S+SK I++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR++IRRVG+IKD+D + G
Sbjct: 190 GSVSKSKTIVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMEIRRVGAIKDRDEVVG 249

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           NQTRVKVVKNK+A PFK V+FDIMYGEGIS  GELIDLGVKA++V+KSGAWFS+   R+G
Sbjct: 250 NQTRVKVVKNKLAPPFKVVDFDIMYGEGISKTGELIDLGVKANVVEKSGAWFSYNSTRVG 309

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           QGREN+K FLR+N  +A  IE+ +R NAGLVA++L   P
Sbjct: 310 QGRENAKQFLRDNPAMAGEIEATIRANAGLVAEALAAGP 348


>gi|254464079|ref|ZP_05077490.1| protein RecA [Rhodobacterales bacterium Y4I]
 gi|206684987|gb|EDZ45469.1| protein RecA [Rhodobacterales bacterium Y4I]
          Length = 355

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 248/343 (72%), Positives = 292/343 (85%), Gaps = 5/343 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL++AL+QI+R +GKG+IM+LG  G+  + IE  S+GSLGLDIALGIGG P GRIV
Sbjct: 14  DKQKALDSALAQIERQFGKGSIMKLGD-GTALQEIEASSTGSLGLDIALGIGGLPMGRIV 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD  YA KLGVDL  LLISQPDTG
Sbjct: 73  EIYGPESSGKTTLTLHCIAEQQKKGGVCAFVDAEHALDPQYAAKLGVDLDELLISQPDTG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSGAV+++++DSVAALTP++E+EGDMG+S  G+QARLMSQA+RKLT SI
Sbjct: 133 EQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSSVGVQARLMSQAMRKLTGSI 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SRSKC+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIKD+D + GN T
Sbjct: 193 SRSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIKDRDEVVGNST 252

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGV A +V+KSGAWFS+  +R+GQGR
Sbjct: 253 RVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVAAGVVNKSGAWFSYGDERIGQGR 312

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           EN+K+FLREN  IA +IE  +R + GL      Q P +++ DD
Sbjct: 313 ENAKVFLRENPSIAYDIEDKIRASHGLD----FQRPDLDSADD 351


>gi|58039956|ref|YP_191920.1| recombinase A [Gluconobacter oxydans 621H]
 gi|61252238|sp|P48289|RECA_GLUOX RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|58002370|gb|AAW61264.1| RecA protein [Gluconobacter oxydans 621H]
          Length = 345

 Score =  508 bits (1307), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 244/351 (69%), Positives = 298/351 (84%), Gaps = 6/351 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KALE ALSQI+R +GKG+IM++G +  +     V+S+GS+GLDIALGIGG P+GRI
Sbjct: 1   MDKTKALEGALSQIERAFGKGSIMRMGQRPKV--ETNVISTGSIGLDIALGIGGMPRGRI 58

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH +A++QK GGT AF+DAEHALD  YARKLGV++ +LL+SQPD 
Sbjct: 59  VEIYGPESSGKTTLALHVLAEAQKKGGTVAFIDAEHALDPGYARKLGVNIDDLLLSQPDA 118

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT +
Sbjct: 119 GEQALEIADTLVRSGAVDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGT 178

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +SRS  +++F+NQ+RMKIGVMFG+PETTTGGNALKFYSS+RLDIRR+GSIKDKD + GNQ
Sbjct: 179 VSRSNTLVIFLNQIRMKIGVMFGNPETTTGGNALKFYSSIRLDIRRIGSIKDKDEVVGNQ 238

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PF+QVEFDIMYGEGIS  GEL+DLGVK +IV+KSGAWFSF  QR+GQG
Sbjct: 239 TRVKVVKNKMAPPFRQVEFDIMYGEGISKMGELLDLGVKGNIVEKSGAWFSFDSQRIGQG 298

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           REN+K FLRE+ E+A  IE  +R  AG+++D+L+ +P    + DAD    D
Sbjct: 299 RENAKQFLREHPEMASEIERRIRAEAGVLSDALMTDP----EPDADGTPED 345


>gi|110679928|ref|YP_682935.1| recombinase A [Roseobacter denitrificans OCh 114]
 gi|109456044|gb|ABG32249.1| RecA protein [Roseobacter denitrificans OCh 114]
          Length = 359

 Score =  507 bits (1306), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 244/345 (70%), Positives = 294/345 (85%), Gaps = 5/345 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL++AL+QI+R +GKG+IM+LG++G++ + I+  S+GSLGLDIALGIGG P GRIV
Sbjct: 16  DKQKALDSALAQIERQFGKGSIMKLGAEGAV-QDIQASSTGSLGLDIALGIGGLPMGRIV 74

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YA+KLGVDL  LLISQPDTG
Sbjct: 75  EIYGPESSGKTTLTLHCVAEQQKAGGVCAFVDAEHALDPTYAKKLGVDLDELLISQPDTG 134

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSGAV+++++DSVAALTP++E+EGDMG+S  G+QARLMSQA+RKLT SI
Sbjct: 135 EQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSSVGVQARLMSQAMRKLTGSI 194

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++KD+D + GN T
Sbjct: 195 SRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGALKDRDEVVGNHT 254

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQVEFDIMYGEGIS  GEL+DLGV A +VDKSG+WFS+  +R+GQGR
Sbjct: 255 RVKVVKNKVAAPFKQVEFDIMYGEGISKMGELLDLGVAAGVVDKSGSWFSYGDERIGQGR 314

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           EN+K FLREN+++A  IE  +R   GL  D     PA   K D D
Sbjct: 315 ENAKGFLRENVQMALEIEDKIRAAHGLDFDM----PAHEKKADDD 355


>gi|109254803|emb|CAK22263.1| recombinase A [Ochrobactrum oryzae]
 gi|148897703|emb|CAM18505.1| recombinase A [Ochrobactrum oryzae]
          Length = 299

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 240/300 (80%), Positives = 275/300 (91%), Gaps = 1/300 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           +AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG PKGRIVEIYGPE
Sbjct: 1   DAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLPKGRIVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALHTIAEAQKRGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS C+
Sbjct: 120 TDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCM 179

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQTRVKVVK
Sbjct: 180 VIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQTRVKVVK 239

Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316
           NK+A PFKQVEFDIMYG G+S  GELIDLGVKA +V+KSGAWFS+  QRLGQGREN+K F
Sbjct: 240 NKLAPPFKQVEFDIMYGAGVSKTGELIDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQF 299


>gi|260752406|ref|YP_003225299.1| recombinase A [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258551769|gb|ACV74715.1| recA protein [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 354

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 243/341 (71%), Positives = 294/341 (86%), Gaps = 3/341 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N +DK KALEAAL+QI R +GKG++M+LGS+  I   I+ +SSGSLGLDIALGIGG P+G
Sbjct: 14  NNMDKQKALEAALAQIDRAFGKGSVMRLGSREKI--EIDTISSGSLGLDIALGIGGLPRG 71

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYG ESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+KLGV+  +L++SQP
Sbjct: 72  RIVEIYGHESSGKTTLALHAIAEAQKAGGTAAFVDAEHALDPVYAKKLGVNTDDLIVSQP 131

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEITD L+RS AVDI+V+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T
Sbjct: 132 DTGEQALEITDTLIRSNAVDILVVDSVAALTPRAEIEGEMGDSHVGLQARLMSQALRKIT 191

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            SI+RS+ +++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRRVG IKD+D I G
Sbjct: 192 GSINRSQTLVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRVGQIKDRDEIVG 251

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N TRVKVVKNK+A PFKQVEFDIMYGEG+S  GE++DLGVKA I+DKSG+WFS    R+G
Sbjct: 252 NATRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIIDKSGSWFSHDSVRIG 311

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348
           QGREN+K FLRE+ E+ E IE ++R N   +AD +L +P+I
Sbjct: 312 QGRENAKTFLREHPEMTEKIEKMIRHNTAEIADEML-DPSI 351


>gi|148553436|ref|YP_001261018.1| recombinase A [Sphingomonas wittichii RW1]
 gi|148498626|gb|ABQ66880.1| recA protein [Sphingomonas wittichii RW1]
          Length = 357

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 237/343 (69%), Positives = 296/343 (86%), Gaps = 2/343 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           +E   +D+ KALEAAL+QI R +GKG+ M+LGS+ ++   +E +S+GSLGLDIALGIGG 
Sbjct: 12  REAANMDRQKALEAALAQIDRAFGKGSAMKLGSRETM--QVEAISTGSLGLDIALGIGGL 69

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGR+VE++GPESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+KLGV++  L++
Sbjct: 70  PKGRVVEVFGPESSGKTTLALHAIAEAQKVGGTAAFIDAEHALDPVYAKKLGVNIDELIV 129

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D LVRS A+D++VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALR
Sbjct: 130 SQPDTGEQALEIADTLVRSNAIDVLVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 189

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           K+T SISRSKC+++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR G+IKD+D 
Sbjct: 190 KITGSISRSKCLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRTGAIKDRDE 249

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + GN TRVKVVKNK+A PFKQVEFDIMYGEG+S  GEL+DLGVKA +V+KSGAWFS+   
Sbjct: 250 VVGNATRVKVVKNKVAPPFKQVEFDIMYGEGVSKVGELLDLGVKAGLVEKSGAWFSYDSI 309

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           R+GQGRENSK++LREN E+A  +E+ +R NA  V ++++  P+
Sbjct: 310 RIGQGRENSKVYLRENPEVAAKLEAAIRGNADGVGEAMMAGPS 352


>gi|126729802|ref|ZP_01745615.1| recombinase A [Sagittula stellata E-37]
 gi|126709921|gb|EBA08974.1| recombinase A [Sagittula stellata E-37]
          Length = 349

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 243/327 (74%), Positives = 285/327 (87%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL++AL+QI+R +GKG+IM+LG + +I + IE  S+GSLGLDIALGIGG PKGRI+
Sbjct: 8   DKQKALDSALAQIERQFGKGSIMKLGGENAI-KDIEATSTGSLGLDIALGIGGLPKGRII 66

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YARKLGVDL  LLISQPDTG
Sbjct: 67  EIYGPESSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYARKLGVDLDELLISQPDTG 126

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSGAV ++V+DSVAALTP++E+EGDMG+S  G+ ARLMSQA+RKLT+SI
Sbjct: 127 EQALEITDTLVRSGAVSLVVVDSVAALTPKSELEGDMGDSSVGVHARLMSQAMRKLTASI 186

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D + GNQT
Sbjct: 187 SRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRDEVVGNQT 246

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGVKA +VDKSGAWFS+  +R+GQGR
Sbjct: 247 RVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVKAGVVDKSGAWFSYGDERIGQGR 306

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K +LREN  +A  IE  +R   GL
Sbjct: 307 ENAKNYLRENSRVALEIEDKIRAAHGL 333


>gi|212726671|gb|AAM50050.2| recombinase A [Zymomonas mobilis subsp. mobilis]
          Length = 354

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 243/341 (71%), Positives = 294/341 (86%), Gaps = 3/341 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N +DK KALEAAL+QI R +GKG++M+LGS+  I   I+ +SSGSLGLDIALGIGG P+G
Sbjct: 14  NNMDKQKALEAALAQIDRAFGKGSVMRLGSREKI--EIDTISSGSLGLDIALGIGGLPRG 71

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+KLGV+  +L++SQP
Sbjct: 72  RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFVDAEHALDPVYAKKLGVNTDDLIVSQP 131

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEITD L+RS AVDI+V+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T
Sbjct: 132 DTGEQALEITDTLIRSNAVDILVVDSVAALTPRAEIEGEMGDSHVGLQARLMSQALRKIT 191

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            SI+RS+ +++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRRVG IKD+D I G
Sbjct: 192 GSINRSQTLVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRVGQIKDRDEIVG 251

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N TRVKVVKNK+A  FKQVEFDIMYGEG+S  GE++DLGVKA I+DKSG+WFS    R+G
Sbjct: 252 NATRVKVVKNKLAPRFKQVEFDIMYGEGVSKMGEILDLGVKAGIIDKSGSWFSHDSVRIG 311

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348
           QGREN+K FLRE+ E+ E IE ++R N   +AD +L +P+I
Sbjct: 312 QGRENAKTFLREHPEMTEKIEKMIRHNTAEIADEML-DPSI 351


>gi|254461098|ref|ZP_05074514.1| protein RecA [Rhodobacterales bacterium HTCC2083]
 gi|206677687|gb|EDZ42174.1| protein RecA [Rhodobacteraceae bacterium HTCC2083]
          Length = 351

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 247/345 (71%), Positives = 290/345 (84%), Gaps = 5/345 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL++AL+QI+R +GKG+IM+LG + ++ + IE  S+GSLGLDIALGIGG PKGRIV
Sbjct: 8   DKQKALDSALAQIERQFGKGSIMKLGDENAV-QQIEATSTGSLGLDIALGIGGLPKGRIV 66

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LHT+A+ QK GG CAFVDAEHALD  YA+KLGVDL  LLISQPDTG
Sbjct: 67  EIYGPESSGKTTLTLHTVAEEQKKGGVCAFVDAEHALDPQYAKKLGVDLDELLISQPDTG 126

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAV++IV+DSVAALTP++E+EGDMG+S  G+ ARLMSQA+RKLT SI
Sbjct: 127 EQALEIVDTLVRSGAVNMIVVDSVAALTPKSELEGDMGDSSVGVHARLMSQAMRKLTGSI 186

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++KD+D + GN T
Sbjct: 187 SRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGALKDRDEVVGNAT 246

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGVKA IVDKSG+WFS+  +R+GQGR
Sbjct: 247 RVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVKAGIVDKSGSWFSYGDERIGQGR 306

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           EN+K FL+EN  I+  IE  +R   GL  D     P    KDD D
Sbjct: 307 ENAKTFLKENTRISYEIEDKIRAAHGLDFDM----PKEEQKDDDD 347


>gi|4768851|gb|AAD29645.1|AF124757_5 RecA protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 339

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 242/339 (71%), Positives = 293/339 (86%), Gaps = 3/339 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK KALEAAL+QI R +GKG++M+LGS+  I   I+ +SSGSLGLDIALGIGG P+GRI
Sbjct: 1   MDKQKALEAALAQIDRAFGKGSVMRLGSREKI--EIDTISSGSLGLDIALGIGGLPRGRI 58

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+KLGV+  +L++SQPDT
Sbjct: 59  VEIYGPESSGKTTLALHAIAEAQKAGGTAAFVDAEHALDPVYAKKLGVNTDDLIVSQPDT 118

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD L+RS AVDI+V+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T S
Sbjct: 119 GEQALEITDTLIRSNAVDILVVDSVAALTPRAEIEGEMGDSHVGLQARLMSQALRKITGS 178

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I+RS+ +++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRRVG IKD+D I GN 
Sbjct: 179 INRSQTLVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRVGQIKDRDEIVGNA 238

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+  PFKQVEFDIMYGEG+S  GE++DLGVKA I+DKSG+WFS    R+GQG
Sbjct: 239 TRVKVVKNKLLRPFKQVEFDIMYGEGVSKMGEILDLGVKAGIIDKSGSWFSHDSVRIGQG 298

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348
           REN+K FLRE+ E+ E IE ++R N   +AD +L +P+I
Sbjct: 299 RENAKTFLREHPEMTEKIEKMIRHNTAEIADEML-DPSI 336


>gi|146424893|emb|CAM12555.1| recombinase A [Ochrobactrum anthropi]
 gi|146424973|emb|CAM12595.1| recombinase A [Ochrobactrum anthropi]
 gi|148887245|emb|CAM12789.1| recombinase A [Ochrobactrum intermedium]
 gi|148897667|emb|CAM18487.1| recombinase A [Ochrobactrum intermedium]
 gi|148897669|emb|CAM18488.1| recombinase A [Ochrobactrum intermedium]
 gi|148897671|emb|CAM18489.1| recombinase A [Ochrobactrum intermedium]
 gi|148897673|emb|CAM18490.1| recombinase A [Ochrobactrum intermedium]
 gi|148897675|emb|CAM18491.1| recombinase A [Ochrobactrum intermedium]
 gi|148897677|emb|CAM18492.1| recombinase A [Ochrobactrum intermedium]
 gi|148897681|emb|CAM18494.1| recombinase A [Ochrobactrum intermedium]
 gi|148897683|emb|CAM18495.1| recombinase A [Ochrobactrum intermedium]
 gi|148897685|emb|CAM18496.1| recombinase A [Ochrobactrum intermedium]
 gi|148897687|emb|CAM18497.1| recombinase A [Ochrobactrum intermedium]
 gi|148897689|emb|CAM18498.1| recombinase A [Ochrobactrum intermedium]
 gi|148897691|emb|CAM18499.1| recombinase A [Ochrobactrum intermedium]
 gi|148897693|emb|CAM18500.1| recombinase A [Ochrobactrum intermedium]
          Length = 299

 Score =  505 bits (1301), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 238/300 (79%), Positives = 275/300 (91%), Gaps = 1/300 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           +AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG PKGRIVEIYGPE
Sbjct: 1   DAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLPKGRIVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS C+
Sbjct: 120 TDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCM 179

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQTRVKVVK
Sbjct: 180 VIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQTRVKVVK 239

Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316
           NK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QRLGQGREN+K +
Sbjct: 240 NKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQY 299


>gi|148887229|emb|CAM12781.1| recombinase A [Ochrobactrum anthropi]
          Length = 299

 Score =  505 bits (1300), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 239/300 (79%), Positives = 274/300 (91%), Gaps = 1/300 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           +AALSQI+R +GKG+IM+LG      E IE VS+GSL LDIALG+GG PKGRIVEIYGPE
Sbjct: 1   DAALSQIERAFGKGSIMRLGQNDHSIE-IETVSTGSLSLDIALGVGGLPKGRIVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS C+
Sbjct: 120 TDTLVRSGAIDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCM 179

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQTRVKVVK
Sbjct: 180 VIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQTRVKVVK 239

Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316
           NK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QRLGQGREN+K +
Sbjct: 240 NKLAPPFKQVEFDIMYGAGVSKMGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQY 299


>gi|112362894|emb|CAL34148.1| recombinase A [Brucella microti CCM 4915]
 gi|112362896|emb|CAL34149.1| recombinase A [Brucella microti]
          Length = 299

 Score =  505 bits (1300), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 238/300 (79%), Positives = 274/300 (91%), Gaps = 1/300 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           +AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG PKGRIVEIYGPE
Sbjct: 1   DAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLPKGRIVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT SISRS C+
Sbjct: 120 TDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTGSISRSNCM 179

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQTRVKVVK
Sbjct: 180 VIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQTRVKVVK 239

Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316
           NK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QRLGQGREN+K +
Sbjct: 240 NKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQY 299


>gi|148887237|emb|CAM12785.1| recombinase A [Ochrobactrum sp. TK 14]
          Length = 299

 Score =  504 bits (1299), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 238/300 (79%), Positives = 275/300 (91%), Gaps = 1/300 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           +AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG PKGRIV+IYGPE
Sbjct: 1   DAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLPKGRIVKIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS C+
Sbjct: 120 TDTLVRSGAIDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCM 179

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQTRVKVVK
Sbjct: 180 VIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQTRVKVVK 239

Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316
           NK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QRLGQGREN+K +
Sbjct: 240 NKLAPPFKQVEFDIMYGAGVSKMGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQY 299


>gi|146424877|emb|CAM12547.1| recombinase A [Ochrobactrum anthropi]
 gi|146424881|emb|CAM12549.1| recombinase A [Ochrobactrum anthropi]
 gi|146424883|emb|CAM12550.1| recombinase A [Ochrobactrum anthropi]
 gi|146424885|emb|CAM12551.1| recombinase A [Ochrobactrum anthropi]
 gi|146424887|emb|CAM12552.1| recombinase A [Ochrobactrum anthropi]
 gi|146424889|emb|CAM12553.1| recombinase A [Ochrobactrum anthropi]
 gi|146424891|emb|CAM12554.1| recombinase A [Ochrobactrum anthropi]
 gi|146424895|emb|CAM12556.1| recombinase A [Ochrobactrum anthropi]
 gi|146424897|emb|CAM12557.1| recombinase A [Ochrobactrum anthropi]
 gi|146424899|emb|CAM12558.1| recombinase A [Ochrobactrum anthropi]
 gi|146424901|emb|CAM12559.1| recombinase A [Ochrobactrum anthropi]
 gi|146424903|emb|CAM12560.1| recombinase A [Ochrobactrum anthropi]
 gi|146424905|emb|CAM12561.1| recombinase A [Ochrobactrum anthropi]
 gi|146424907|emb|CAM12562.1| recombinase A [Ochrobactrum anthropi]
 gi|146424909|emb|CAM12563.1| recombinase A [Ochrobactrum anthropi]
 gi|146424911|emb|CAM12564.1| recombinase A [Ochrobactrum anthropi]
 gi|146424913|emb|CAM12565.1| recombinase A [Ochrobactrum anthropi]
 gi|146424915|emb|CAM12566.1| recombinase A [Ochrobactrum anthropi]
 gi|146424917|emb|CAM12567.1| recombinase A [Ochrobactrum anthropi]
 gi|146424919|emb|CAM12568.1| recombinase A [Ochrobactrum anthropi]
 gi|146424921|emb|CAM12569.1| recombinase A [Ochrobactrum anthropi]
 gi|146424923|emb|CAM12570.1| recombinase A [Ochrobactrum anthropi]
 gi|146424925|emb|CAM12571.1| recombinase A [Ochrobactrum anthropi]
 gi|146424927|emb|CAM12572.1| recombinase A [Ochrobactrum anthropi]
 gi|146424929|emb|CAM12573.1| recombinase A [Ochrobactrum anthropi]
 gi|146424931|emb|CAM12574.1| recombinase A [Ochrobactrum anthropi]
 gi|146424933|emb|CAM12575.1| recombinase A [Ochrobactrum anthropi]
 gi|146424935|emb|CAM12576.1| recombinase A [Ochrobactrum anthropi]
 gi|146424937|emb|CAM12577.1| recombinase A [Ochrobactrum anthropi]
 gi|146424939|emb|CAM12578.1| recombinase A [Ochrobactrum anthropi]
 gi|146424941|emb|CAM12579.1| recombinase A [Ochrobactrum anthropi]
 gi|146424943|emb|CAM12580.1| recombinase A [Ochrobactrum anthropi]
 gi|146424945|emb|CAM12581.1| recombinase A [Ochrobactrum anthropi]
 gi|146424947|emb|CAM12582.1| recombinase A [Ochrobactrum anthropi]
 gi|146424949|emb|CAM12583.1| recombinase A [Ochrobactrum anthropi]
 gi|146424951|emb|CAM12584.1| recombinase A [Ochrobactrum anthropi]
 gi|146424953|emb|CAM12585.1| recombinase A [Ochrobactrum anthropi]
 gi|146424955|emb|CAM12586.1| recombinase A [Ochrobactrum anthropi]
 gi|146424957|emb|CAM12587.1| recombinase A [Ochrobactrum anthropi]
 gi|146424959|emb|CAM12588.1| recombinase A [Ochrobactrum anthropi]
 gi|146424961|emb|CAM12589.1| recombinase A [Ochrobactrum anthropi]
 gi|146424963|emb|CAM12590.1| recombinase A [Ochrobactrum anthropi]
 gi|146424965|emb|CAM12591.1| recombinase A [Ochrobactrum anthropi]
 gi|146424967|emb|CAM12592.1| recombinase A [Ochrobactrum anthropi]
 gi|146424969|emb|CAM12593.1| recombinase A [Ochrobactrum anthropi]
 gi|146424971|emb|CAM12594.1| recombinase A [Ochrobactrum anthropi]
 gi|146424977|emb|CAM12597.1| recombinase A [Ochrobactrum anthropi]
 gi|146424979|emb|CAM12598.1| recombinase A [Ochrobactrum anthropi]
 gi|146424981|emb|CAM12599.1| recombinase A [Ochrobactrum anthropi]
 gi|146424983|emb|CAM12600.1| recombinase A [Ochrobactrum anthropi]
 gi|148887235|emb|CAM12784.1| recombinase A [Ochrobactrum anthropi]
 gi|148887247|emb|CAM12790.1| recombinase A [Ochrobactrum anthropi]
 gi|148897665|emb|CAM18486.1| recombinase A [Ochrobactrum intermedium]
 gi|148897695|emb|CAM18501.1| recombinase A [Ochrobactrum lupini]
 gi|148897697|emb|CAM18502.1| recombinase A [Ochrobactrum tritici]
 gi|148897699|emb|CAM18503.1| recombinase A [Ochrobactrum tritici]
 gi|148897701|emb|CAM18504.1| recombinase A [Ochrobactrum tritici]
 gi|148897711|emb|CAM18509.1| recombinase A [Ochrobactrum anthropi]
          Length = 299

 Score =  504 bits (1299), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 237/300 (79%), Positives = 274/300 (91%), Gaps = 1/300 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           +AALSQI+R +GKG+IM+LG    + E IE V +GSL LDIALG+GG PKGRIVEIYGPE
Sbjct: 1   DAALSQIERAFGKGSIMRLGKNAPVIE-IETVPTGSLSLDIALGVGGLPKGRIVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS C+
Sbjct: 120 TDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCM 179

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQTRVKVVK
Sbjct: 180 VIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQTRVKVVK 239

Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316
           NK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QRLGQGREN+K +
Sbjct: 240 NKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQY 299


>gi|56696903|ref|YP_167265.1| recombinase A [Ruegeria pomeroyi DSS-3]
 gi|76363341|sp|Q5LRU0|RECA_SILPO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|56678640|gb|AAV95306.1| RecA [Ruegeria pomeroyi DSS-3]
          Length = 347

 Score =  504 bits (1299), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 247/330 (74%), Positives = 285/330 (86%), Gaps = 1/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL++AL+QI+R +GKG+IM+LG + +I E IE  S+GSLGLDIALGIGG P GRIV
Sbjct: 8   DKQKALDSALAQIERQFGKGSIMRLGGENAIQE-IEASSTGSLGLDIALGIGGLPMGRIV 66

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD  YARKLGVDL  LLISQPDTG
Sbjct: 67  EIYGPESSGKTTLTLHCIAEQQKRGGVCAFVDAEHALDPQYARKLGVDLDELLISQPDTG 126

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSGAV+++V+DSVAALTP++E+EGDMG+S  G+ ARLMSQA+RKLT SI
Sbjct: 127 EQALEITDTLVRSGAVNMVVVDSVAALTPKSELEGDMGDSSVGVHARLMSQAMRKLTGSI 186

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SRSKC+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D + GN T
Sbjct: 187 SRSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRDEVVGNAT 246

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGVKA +VDKSG+WFS+  +R+GQGR
Sbjct: 247 RVKVVKNKVAPPFKQVEFDIMYGEGISKTGELLDLGVKAGVVDKSGSWFSYGDERIGQGR 306

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           EN+K FLREN  IA  IE  +R   GL  D
Sbjct: 307 ENAKTFLRENQSIALAIEDKIRAAHGLEFD 336


>gi|83955443|ref|ZP_00964074.1| recombinase A [Sulfitobacter sp. NAS-14.1]
 gi|83840087|gb|EAP79262.1| recombinase A [Sulfitobacter sp. NAS-14.1]
          Length = 348

 Score =  504 bits (1299), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 246/363 (67%), Positives = 301/363 (82%), Gaps = 16/363 (4%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD +K+    +K KAL++AL+QI+R +GKG+IM+LG++G+I + I+  S+GSLGLDIALG
Sbjct: 1   MDNKKQ---AEKQKALDSALAQIERQFGKGSIMKLGAEGAI-QDIKASSTGSLGLDIALG 56

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG P GRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YARKLGVD+ 
Sbjct: 57  IGGLPMGRIIEIYGPESSGKTTLTLHCVAEQQKNGGVCAFVDAEHALDPQYARKLGVDID 116

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LLISQPDTGEQALEITD LVRSGAV+++V+DSVAALTP++E+EGDMG+S  G+QARLMS
Sbjct: 117 ELLISQPDTGEQALEITDTLVRSGAVNMVVVDSVAALTPKSELEGDMGDSSVGVQARLMS 176

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKLT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++K
Sbjct: 177 QAMRKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGALK 236

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D+D + GN TRVK+VKNK+A+PFKQVEFDIMYGEGIS  GEL+DLGVKA +VDKSG+WFS
Sbjct: 237 DRDEVVGNATRVKIVKNKVAAPFKQVEFDIMYGEGISKMGELLDLGVKAGVVDKSGSWFS 296

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           +  +R+GQGREN+K FL+EN  +A +IE  +R   GL  D             +D DD D
Sbjct: 297 YGDERIGQGRENAKTFLKENTAMANDIEDKIRAAHGLDFDG------------SDSDDAD 344

Query: 361 NVE 363
            +E
Sbjct: 345 ILE 347


>gi|83944500|ref|ZP_00956953.1| recombinase A [Sulfitobacter sp. EE-36]
 gi|83844702|gb|EAP82586.1| recombinase A [Sulfitobacter sp. EE-36]
          Length = 356

 Score =  504 bits (1299), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 246/363 (67%), Positives = 300/363 (82%), Gaps = 16/363 (4%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD +K+    +K KAL++AL+QI+R +GKG+IM+LG++G+I + I+  S+GSLGLDIALG
Sbjct: 9   MDNKKQ---AEKQKALDSALAQIERQFGKGSIMKLGAEGAI-QDIKASSTGSLGLDIALG 64

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG P GRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YARKLGVD+ 
Sbjct: 65  IGGLPMGRIIEIYGPESSGKTTLTLHCVAEQQKNGGVCAFVDAEHALDPQYARKLGVDID 124

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LLISQPDTGEQALEITD LVRSGAV+++V+DSVAALTP++E+EGDMG+S  G+QARLMS
Sbjct: 125 ELLISQPDTGEQALEITDTLVRSGAVNMVVVDSVAALTPKSELEGDMGDSSVGVQARLMS 184

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKLT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++K
Sbjct: 185 QAMRKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGALK 244

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D+D + GN TRVK+VKNK+A+PFKQVEFDIMYGEGIS  GEL+DLGVKA +VDKSG+WFS
Sbjct: 245 DRDEVVGNATRVKIVKNKVAAPFKQVEFDIMYGEGISKMGELLDLGVKAGVVDKSGSWFS 304

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           +  +R+GQGREN+K FL+EN  +A  IE  +R   GL  D             +D DD D
Sbjct: 305 YGDERIGQGRENAKTFLKENTAMANEIEDKIRAAHGLDFDG------------SDSDDAD 352

Query: 361 NVE 363
            +E
Sbjct: 353 ILE 355


>gi|87199296|ref|YP_496553.1| recombinase A [Novosphingobium aromaticivorans DSM 12444]
 gi|87134977|gb|ABD25719.1| recA protein [Novosphingobium aromaticivorans DSM 12444]
          Length = 356

 Score =  504 bits (1298), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 243/348 (69%), Positives = 294/348 (84%), Gaps = 8/348 (2%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +D+ KAL+AAL+QI R +GKG+ M+LGS+ ++   +E VS+GSLGLDIALGIGG P+GRI
Sbjct: 16  MDRQKALDAALAQIDRAFGKGSAMRLGSKEAM--QVEAVSTGSLGLDIALGIGGLPRGRI 73

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALH IA++QK GGT AF+DAEHALD +YARKLGVD+ NL++SQPDT
Sbjct: 74  IEIYGPESSGKTTLALHAIAEAQKGGGTAAFIDAEHALDPVYARKLGVDIDNLIVSQPDT 133

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRS A+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT S
Sbjct: 134 GEQALEITDTLVRSNAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGS 193

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ISRS+C+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD+D I GN 
Sbjct: 194 ISRSRCMVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDRDEIVGNA 253

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEGIS  GE++DLGVKA +V+KSGAWFS+   R+GQG
Sbjct: 254 TRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGLVEKSGAWFSYDSIRIGQG 313

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           REN+K FLREN E+   +E+ +R     VA+ L+  P      DAD D
Sbjct: 314 RENAKNFLRENPEVCSRLEAAIRGRTDQVAEGLMAGP------DADDD 355


>gi|83951872|ref|ZP_00960604.1| recombinase A [Roseovarius nubinhibens ISM]
 gi|83836878|gb|EAP76175.1| recombinase A [Roseovarius nubinhibens ISM]
          Length = 352

 Score =  504 bits (1298), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 247/345 (71%), Positives = 289/345 (83%), Gaps = 5/345 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL++AL+QI+R +GKG+IM+LG+   + E IE  S+GSLGLDIALGIGG PKGRI+
Sbjct: 8   DKQKALDSALAQIERQFGKGSIMKLGADNPVQE-IEATSTGSLGLDIALGIGGLPKGRII 66

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD IYARKLGVDL  LLISQPDTG
Sbjct: 67  EIYGPESSGKTTLTLHCVAEEQKKGGVCAFVDAEHALDPIYARKLGVDLDELLISQPDTG 126

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAV ++V+DSVAALTP++E+EGDMG+S  G+QARLMSQA+RKLT SI
Sbjct: 127 EQALEIVDTLVRSGAVSMVVVDSVAALTPKSELEGDMGDSNVGVQARLMSQAMRKLTGSI 186

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SRSKC ++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++KD+D + GN T
Sbjct: 187 SRSKCTVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGALKDRDEVVGNAT 246

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGVKA +V+KSG+WFS+  +R+GQGR
Sbjct: 247 RVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVKAGVVEKSGSWFSYGDERIGQGR 306

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           EN+K FL+EN  IA  IE  +R   GL  D     P I  + D D
Sbjct: 307 ENAKTFLKENSAIALAIEDKIRAAHGLEFDM----PEIEKQGDED 347


>gi|146424879|emb|CAM12548.1| recombinase A [Ochrobactrum anthropi]
          Length = 298

 Score =  504 bits (1298), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 237/298 (79%), Positives = 273/298 (91%), Gaps = 1/298 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           +AALSQI+R +GKG+IM+LG    + E IE V +GSL LDIALG+GG PKGRIVEIYGPE
Sbjct: 1   DAALSQIERAFGKGSIMRLGKNAPVIE-IETVPTGSLSLDIALGVGGLPKGRIVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS C+
Sbjct: 120 TDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCM 179

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQTRVKVVK
Sbjct: 180 VIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQTRVKVVK 239

Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           NK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QRLGQGREN+K
Sbjct: 240 NKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAK 297


>gi|326387207|ref|ZP_08208817.1| recombinase A [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208388|gb|EGD59195.1| recombinase A [Novosphingobium nitrogenifigens DSM 19370]
          Length = 356

 Score =  504 bits (1297), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 243/350 (69%), Positives = 296/350 (84%), Gaps = 7/350 (2%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           KEM   D+ KAL+AAL+QI R +GKG++M+LG + ++   IE +SSGSLGLDIALGIGG 
Sbjct: 14  KEM---DRQKALDAALAQIDRAFGKGSVMKLGQKETM--QIEAISSGSLGLDIALGIGGL 68

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GRIVEIYGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+KLGVD+ NL++
Sbjct: 69  PRGRIVEIYGPESSGKTTLALHVIAEAQKAGGTAAFVDAEHALDPVYAKKLGVDIDNLIV 128

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEITD LVRS A+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALR
Sbjct: 129 SQPDTGEQALEITDTLVRSNAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 188

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT SISRS+C+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD+D 
Sbjct: 189 KLTGSISRSRCLVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDRDE 248

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           I GN TRVKVVKNK+A PFKQVEFDIMYGEGIS  GE++DLGVKA +V+KSGAWFS+   
Sbjct: 249 IVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGLVEKSGAWFSYDSI 308

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           R+GQGREN+K +LR N E+   +E+ +R     VA+ ++  P  + +DDA
Sbjct: 309 RIGQGRENAKNYLRNNPEVCNRLEAAIRSRTDQVAEGMMTGP--DAEDDA 356


>gi|163731785|ref|ZP_02139232.1| recombinase A [Roseobacter litoralis Och 149]
 gi|161395239|gb|EDQ19561.1| recombinase A [Roseobacter litoralis Och 149]
          Length = 359

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 242/345 (70%), Positives = 292/345 (84%), Gaps = 5/345 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL++AL+QI+R +GKG+IM+LG+ G++ + I   S+GSLGLDIALGIGG P GRI+
Sbjct: 16  DKQKALDSALAQIERQFGKGSIMKLGTAGAV-QDITASSTGSLGLDIALGIGGLPMGRII 74

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YA+KLG+DL  LLISQPDTG
Sbjct: 75  EIYGPESSGKTTLTLHCVAEQQKAGGVCAFVDAEHALDPAYAKKLGIDLDELLISQPDTG 134

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSGAV+++++DSVAALTP++E+EGDMG+S  G+QARLMSQA+RKLT SI
Sbjct: 135 EQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSSVGVQARLMSQAMRKLTGSI 194

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++KD+D + GN T
Sbjct: 195 SRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGALKDRDEVVGNHT 254

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQVEFDIMYGEGIS  GEL+DLGV A +VDKSG+WFS+  +R+GQGR
Sbjct: 255 RVKVVKNKVAAPFKQVEFDIMYGEGISKMGELLDLGVAAGVVDKSGSWFSYGDERIGQGR 314

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           EN+K FLREN+++A  IE  +R   GL  D     PA   K D D
Sbjct: 315 ENAKGFLRENVQMALEIEDKIRAAHGLDFDM----PAHEKKADDD 355


>gi|148887243|emb|CAM12788.1| recombinase A [Ochrobactrum intermedium]
          Length = 299

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 237/300 (79%), Positives = 274/300 (91%), Gaps = 1/300 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           +AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG PKGRIVEIYGPE
Sbjct: 1   DAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLPKGRIVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHTIA++Q  GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALHTIAEAQXKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS C+
Sbjct: 120 TDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCM 179

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQTRVKVVK
Sbjct: 180 VIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQTRVKVVK 239

Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316
           NK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QRLGQGREN+K +
Sbjct: 240 NKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQY 299


>gi|148897679|emb|CAM18493.1| recombinase A [Ochrobactrum intermedium]
          Length = 299

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 237/300 (79%), Positives = 274/300 (91%), Gaps = 1/300 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           +AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG PKGRIVEIYGPE
Sbjct: 1   DAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLPKGRIVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALR LT+SISRS C+
Sbjct: 120 TDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRTLTASISRSGCL 179

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQTRVKVVK
Sbjct: 180 VIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQTRVKVVK 239

Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316
           NK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QRLGQGREN+K +
Sbjct: 240 NKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQY 299


>gi|149915204|ref|ZP_01903732.1| recombinase A [Roseobacter sp. AzwK-3b]
 gi|149810925|gb|EDM70764.1| recombinase A [Roseobacter sp. AzwK-3b]
          Length = 364

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 249/358 (69%), Positives = 297/358 (82%), Gaps = 6/358 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD +K     DK KALE+AL+QI+R +GKG+IM++GS   + + IE  S+GSLGLDIALG
Sbjct: 9   MDSKKN---ADKQKALESALAQIERQFGKGSIMKMGSDNPVAD-IEATSTGSLGLDIALG 64

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG PKGRIVEIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD IYA+KLGVD+ 
Sbjct: 65  IGGLPKGRIVEIYGPESSGKTTLTLHCVAEEQKKGGVCAFVDAEHALDPIYAQKLGVDIN 124

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LLISQPDTGEQ+LEI D LVRSGAV +IV+DSVAALTP++E+EGDMG+S  G+QARLMS
Sbjct: 125 ELLISQPDTGEQSLEIVDTLVRSGAVSMIVVDSVAALTPKSELEGDMGDSNVGVQARLMS 184

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKLT SISRSKC ++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIK
Sbjct: 185 QAMRKLTGSISRSKCTVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIK 244

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D+D + GN TRVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGVKA +V+KSG+WFS
Sbjct: 245 DRDEVVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKTGELLDLGVKAGVVEKSGSWFS 304

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           +  +R+GQGREN+K FL++N + A +IE  +R + GL  D  + EP    +   + DD
Sbjct: 305 YGDERIGQGRENAKQFLKDNPKTAYSIEDKIRASHGLEFD--MAEPDGGDRGGPEGDD 360


>gi|218515602|ref|ZP_03512442.1| recombinase A [Rhizobium etli 8C-3]
          Length = 297

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 239/298 (80%), Positives = 276/298 (92%), Gaps = 1/298 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG PKGRI
Sbjct: 1   MDKSKALEAALSQIERSFGKGSIMKLGSNENVIE-IETISTGSLGLDIALGVGGLPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 60  IEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 120 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ
Sbjct: 180 ISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVIGNQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLG
Sbjct: 240 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLG 297


>gi|260427837|ref|ZP_05781816.1| protein RecA [Citreicella sp. SE45]
 gi|260422329|gb|EEX15580.1| protein RecA [Citreicella sp. SE45]
          Length = 359

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 244/337 (72%), Positives = 286/337 (84%), Gaps = 4/337 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD +K     D+ KAL++AL+QI+R +GKG+IM+LG   ++ + IE  S+GSLGLDIALG
Sbjct: 9   MDSKKN---ADRQKALDSALAQIERQFGKGSIMKLGGDNAMKD-IEATSTGSLGLDIALG 64

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG PKGRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YA+KLGVDL 
Sbjct: 65  IGGLPKGRIIEIYGPESSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVDLD 124

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LLISQPDTGEQALEITD LVRSGAV ++V+DSVAALTP++E+EGDMG+S  G+ ARLMS
Sbjct: 125 ELLISQPDTGEQALEITDTLVRSGAVSLVVVDSVAALTPKSELEGDMGDSSVGVHARLMS 184

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKLT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIK
Sbjct: 185 QAMRKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIK 244

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D+D + GNQTRVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGVKA +VDKSGAW+S
Sbjct: 245 DRDEVVGNQTRVKVVKNKVAPPFKQVEFDIMYGEGISKTGELLDLGVKAGVVDKSGAWYS 304

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           +  +R+GQGREN+K FLREN   A  IE  +R   GL
Sbjct: 305 YGDERIGQGRENAKTFLRENPRQAMEIEDKIRAAHGL 341


>gi|146424975|emb|CAM12596.1| recombinase A [Ochrobactrum anthropi]
          Length = 299

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 236/300 (78%), Positives = 273/300 (91%), Gaps = 1/300 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           +AALSQI+R +GKG+IM+LG    + E IE V +GSL LDIALG+GG PKGRIVEIYGPE
Sbjct: 1   DAALSQIERAFGKGSIMRLGKNAPVIE-IETVPTGSLSLDIALGVGGLPKGRIVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHTIA++Q  GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALHTIAEAQXKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS C+
Sbjct: 120 TDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCM 179

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQTRVKVVK
Sbjct: 180 VIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQTRVKVVK 239

Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316
           NK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QRLGQGREN+K +
Sbjct: 240 NKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQY 299


>gi|262277415|ref|ZP_06055208.1| protein RecA [alpha proteobacterium HIMB114]
 gi|262224518|gb|EEY74977.1| protein RecA [alpha proteobacterium HIMB114]
          Length = 376

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 241/343 (70%), Positives = 288/343 (83%), Gaps = 1/343 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KALEAA+ QI + +GKG++M+LG +    + IE +S+GSL LDIALGIGG PK RIV
Sbjct: 18  DKQKALEAAIGQIDQNFGKGSVMKLGQKDQALD-IEAISTGSLSLDIALGIGGLPKSRIV 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLAL  IA++QKTGG CAFVDAEHALD  YARKLGVD   LLISQPDTG
Sbjct: 77  EIYGPESSGKTTLALQVIAEAQKTGGVCAFVDAEHALDPTYARKLGVDTSELLISQPDTG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAV ++V+DSVAALTPRAE+EGDMG++  G+QARLMSQALRKLT SI
Sbjct: 137 EQALEIADTLVRSGAVSVLVVDSVAALTPRAELEGDMGDTHVGLQARLMSQALRKLTGSI 196

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S  +++FINQ+RMKIGVMFGSPETT GGNALKFYSSVR+DIRR+G+IK+KD I GNQT
Sbjct: 197 SKSNTMVIFINQIRMKIGVMFGSPETTAGGNALKFYSSVRMDIRRIGAIKEKDEIIGNQT 256

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK VEFDIMYGEGIS  GELIDLG KA+I++KSGAW+S+KG+++GQG+
Sbjct: 257 RVKVVKNKVAPPFKVVEFDIMYGEGISKMGELIDLGAKANIIEKSGAWYSYKGEKIGQGK 316

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           EN+K +L+ N+ IA  IE  +R NAGL+++ L   P    K +
Sbjct: 317 ENAKQYLKNNLNIAAEIEMAIRANAGLISEKLEGNPIAKEKTE 359


>gi|84500803|ref|ZP_00999038.1| recombinase A [Oceanicola batsensis HTCC2597]
 gi|84390870|gb|EAQ03288.1| recombinase A [Oceanicola batsensis HTCC2597]
          Length = 359

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 242/337 (71%), Positives = 288/337 (85%), Gaps = 4/337 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD +++ N   K KAL++AL+QI+R +GKG+IM+LG     F  IE  S+GSLGLDIALG
Sbjct: 9   MDSKRDAN---KQKALDSALAQIERQFGKGSIMKLGGDNP-FRDIEATSTGSLGLDIALG 64

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG PKGRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YARKLGVDL 
Sbjct: 65  IGGLPKGRIIEIYGPESSGKTTLTLHCVAEEQKKGGVCAFVDAEHALDPQYARKLGVDLD 124

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LLISQPDTGEQALEITD LVRSGAV ++++DSVAALTP++E+EGDMG+S  G+ ARLMS
Sbjct: 125 ELLISQPDTGEQALEITDTLVRSGAVSMVIVDSVAALTPKSELEGDMGDSSVGVHARLMS 184

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKLT SI+RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IK
Sbjct: 185 QAMRKLTGSIARSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIK 244

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           ++D + GNQTRVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGVKA +V+KSG+W+S
Sbjct: 245 ERDEVVGNQTRVKVVKNKVAPPFKQVEFDIMYGEGISKTGELLDLGVKAGVVEKSGSWYS 304

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           +  +R+GQGREN+K+FLREN EIA  IE  +R   GL
Sbjct: 305 YGDERIGQGRENAKVFLRENGEIAYAIEDKIRAAHGL 341


>gi|915212|gb|AAA73517.1| RecA [Gluconobacter oxydans]
          Length = 344

 Score =  502 bits (1292), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 244/349 (69%), Positives = 295/349 (84%), Gaps = 5/349 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KALE ALSQI+R +GKG+IM++G +    E  +V+S+GSLGLDIALGIGG P+GRI
Sbjct: 1   MDKTKALEGALSQIERAFGKGSIMRMGQRPK--EQADVISTGSLGLDIALGIGGMPRGRI 58

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH +A++QK GGT A +DAEHALD  YARKLGV++  LL+SQPD 
Sbjct: 59  VEIYGPESSGKTTLALHVLAEAQKKGGTVAVIDAEHALDPGYARKLGVNIDELLLSQPDA 118

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++V+DSVAAL PR E+EGDMG+S  G+ ARLMSQALRKLT +
Sbjct: 119 GEQALEICDTLVRSGAVDVLVVDSVAALVPRRELEGDMGDSHVGLHARLMSQALRKLTGT 178

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +SRS  +++F+NQM MKIGVMFG+PETTTGGNALKFYSS+RLDIR +GSIKDKD + GNQ
Sbjct: 179 VSRSNTLVIFLNQMGMKIGVMFGNPETTTGGNALKFYSSIRLDIRHIGSIKDKDEVVGNQ 238

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PF+QVEFDIMYGEGIS  GEL+DLGVKA+IV+KSGAWFSF  QR+GQG
Sbjct: 239 TRVKVVKNKMAPPFRQVEFDIMYGEGISKMGELLDLGVKANIVEKSGAWFSFDSQRIGQG 298

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           REN+K FLR++ E++  IE  +R +AG+VAD+L+  P     D+A  DD
Sbjct: 299 RENAKQFLRDDPEMSSEIERRIRSDAGVVADALMVGP---EGDEASSDD 344


>gi|89143137|emb|CAJ41870.1| recombinase A [Pseudochrobactrum asaccharolyticum]
          Length = 302

 Score =  501 bits (1290), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 237/303 (78%), Positives = 277/303 (91%), Gaps = 1/303 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL+AALSQI+R +GKG+IM+LG    + E IE V +GSL LDIALG+GG PKGRIVEIY
Sbjct: 1   KALDAALSQIERSFGKGSIMRLGQNDKVVE-IETVPTGSLSLDIALGVGGLPKGRIVEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTT+ALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQA
Sbjct: 60  GPESSGKTTMALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 LEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 179

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
             +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQTRVK
Sbjct: 180 NTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQTRVK 239

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VVKNK+A PFKQVEFDIMYG+G+S  GEL+DLGVKA IV+KSG+WFS+  QRLGQGR+N+
Sbjct: 240 VVKNKLAPPFKQVEFDIMYGQGVSKTGELVDLGVKAGIVEKSGSWFSYNSQRLGQGRDNA 299

Query: 314 KIF 316
           K F
Sbjct: 300 KNF 302


>gi|259419113|ref|ZP_05743030.1| protein RecA [Silicibacter sp. TrichCH4B]
 gi|259345335|gb|EEW57189.1| protein RecA [Silicibacter sp. TrichCH4B]
          Length = 357

 Score =  501 bits (1290), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 243/327 (74%), Positives = 283/327 (86%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL++AL+QI+R +GKG+IM+LG  G+  + IE  S+GSLGLDIALGIGG P GRIV
Sbjct: 15  DKQKALDSALAQIERQFGKGSIMKLGD-GTALQEIEASSTGSLGLDIALGIGGLPMGRIV 73

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD  YA+KLGVDL  LLISQPDTG
Sbjct: 74  EIYGPESSGKTTLTLHCIAEQQKKGGVCAFVDAEHALDPQYAKKLGVDLDELLISQPDTG 133

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSGAV+++++DSVAALTP++E+EGDMG+S  G+QARLMSQA+RKLT SI
Sbjct: 134 EQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSNVGVQARLMSQAMRKLTGSI 193

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SRSKC+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIKD+D + GN T
Sbjct: 194 SRSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIKDRDEVVGNAT 253

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGV A +V+KSGAWFS+  +R+GQGR
Sbjct: 254 RVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVAAGVVNKSGAWFSYGDERIGQGR 313

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K +LREN  IA  IE  +R   GL
Sbjct: 314 ENAKTYLRENSRIALEIEDKIRAAHGL 340


>gi|126735783|ref|ZP_01751528.1| recA protein [Roseobacter sp. CCS2]
 gi|126714970|gb|EBA11836.1| recA protein [Roseobacter sp. CCS2]
          Length = 360

 Score =  501 bits (1290), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 247/347 (71%), Positives = 290/347 (83%), Gaps = 6/347 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KALE+AL+QI+R +GKG+IM+LG +  + E IE  S+GSLGLDIALGIGG PKGR++
Sbjct: 16  DKEKALESALAQIERQFGKGSIMKLGGENKMPE-IEATSTGSLGLDIALGIGGLPKGRVI 74

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD  YA+KLGV+L  LLISQPDTG
Sbjct: 75  EIYGPESSGKTTLTLHAIAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLISQPDTG 134

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAV+++++DSVAALTP++E+EGDMG+S  G+ ARLMSQA+RKLT SI
Sbjct: 135 EQALEIVDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSSVGVHARLMSQAMRKLTGSI 194

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D + GN T
Sbjct: 195 NRSGCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDEVVGNAT 254

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGVKA +V+KSGAWFS+  +R+GQGR
Sbjct: 255 RVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVKAGVVEKSGAWFSYGDERIGQGR 314

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           ENSKIFLREN  IA  IE  +R   GL  D  L E      DD D D
Sbjct: 315 ENSKIFLRENQSIALEIEDKIRAAHGLDFD--LPE---GNHDDGDDD 356


>gi|89071225|ref|ZP_01158406.1| RecA [Oceanicola granulosus HTCC2516]
 gi|89043238|gb|EAR49467.1| RecA [Oceanicola granulosus HTCC2516]
          Length = 358

 Score =  501 bits (1290), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 241/327 (73%), Positives = 283/327 (86%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL++AL+QI+R +GKG+IM+LG    + + IE  S+GSLGLDIALGIGG PKGRI+
Sbjct: 17  DKQKALDSALAQIERQFGKGSIMKLGGDNKLND-IEATSTGSLGLDIALGIGGLPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YA+KLGV+L  LLISQPDTG
Sbjct: 76  EIYGPESSGKTTLTLHCVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLISQPDTG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSGAV ++V+DSVAALTP++E+EGDMG+S  G+ ARLMSQA+RKLT SI
Sbjct: 136 EQALEITDTLVRSGAVSLVVVDSVAALTPKSELEGDMGDSSVGVHARLMSQAMRKLTGSI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D + GNQT
Sbjct: 196 SRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRDEVVGNQT 255

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGVKA +VDKSG+WFS+  +R+GQGR
Sbjct: 256 RVKVVKNKVAPPFKQVEFDIMYGEGISKTGELLDLGVKAGVVDKSGSWFSYGDERIGQGR 315

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K FLREN +IA  IE  +R   GL
Sbjct: 316 ENAKQFLRENTQIALAIEDKIRAAHGL 342


>gi|84517389|ref|ZP_01004742.1| recombinase A [Loktanella vestfoldensis SKA53]
 gi|84508753|gb|EAQ05217.1| recombinase A [Loktanella vestfoldensis SKA53]
          Length = 359

 Score =  501 bits (1290), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 240/327 (73%), Positives = 284/327 (86%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KALE+AL+QI+R +GKG+IM+LG Q  + E IE  S+GSLGLDIALGIGG PKGR++
Sbjct: 16  DKEKALESALAQIERQFGKGSIMKLGGQNQMPE-IEATSTGSLGLDIALGIGGLPKGRVI 74

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH+IA+ QK GG CAFVDAEHALD  YA+KLGV+L  LLISQPDTG
Sbjct: 75  EIYGPESSGKTTLTLHSIAEEQKKGGICAFVDAEHALDPQYAKKLGVNLDELLISQPDTG 134

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAV ++V+DSVAALTP++E+EGDMG+S  G+ ARLMSQA+RKLT SI
Sbjct: 135 EQALEIVDTLVRSGAVSLVVVDSVAALTPKSELEGDMGDSSVGVHARLMSQAMRKLTGSI 194

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D + GN T
Sbjct: 195 NRSGCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDEVVGNAT 254

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGVKA +V+KSGAWFS+  +R+GQGR
Sbjct: 255 RVKVVKNKVAPPFKQVEFDIMYGEGISKTGELLDLGVKAGVVEKSGAWFSYGDERIGQGR 314

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           ENSK+FL+EN +IA  IE  +R   GL
Sbjct: 315 ENSKLFLKENPKIANEIEDKIRAAHGL 341


>gi|89143139|emb|CAJ41871.1| recombinase A [Pseudochrobactrum saccharolyticum]
          Length = 302

 Score =  501 bits (1289), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 238/303 (78%), Positives = 276/303 (91%), Gaps = 1/303 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL+AALSQI+R +GKG+IM+LG    + E IE V +GSL LDIALG+GG PKGRIVEIY
Sbjct: 1   KALDAALSQIERSFGKGSIMRLGQNDKVVE-IETVPTGSLSLDIALGVGGLPKGRIVEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTT+ALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQA
Sbjct: 60  GPESSGKTTMALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 LEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 179

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
             +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D I GNQTRVK
Sbjct: 180 NTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEIVGNQTRVK 239

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA IV+KSG+WFS+  QRLGQGR+N+
Sbjct: 240 VVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGIVEKSGSWFSYNSQRLGQGRDNA 299

Query: 314 KIF 316
           K F
Sbjct: 300 KNF 302


>gi|85374373|ref|YP_458435.1| recombinase A [Erythrobacter litoralis HTCC2594]
 gi|84787456|gb|ABC63638.1| recombinase A [Erythrobacter litoralis HTCC2594]
          Length = 352

 Score =  501 bits (1289), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 235/339 (69%), Positives = 290/339 (85%), Gaps = 2/339 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N VD+ KAL+AAL+QI R +GKG+ M+LGS+ ++   +E +S+GSLGLDIALGIGG PKG
Sbjct: 12  NNVDRQKALDAALAQIDRAFGKGSAMKLGSKEAM--NVEAISTGSLGLDIALGIGGLPKG 69

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R++E+YGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+ LGVD+  L++SQP
Sbjct: 70  RVIEVYGPESSGKTTLALHAIAEAQKAGGTAAFVDAEHALDPVYAKALGVDIDELIVSQP 129

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEITD LVRS AVDI+V+DSVAAL PRAEIEG+MG+S  G+QARLMSQ+LRKLT
Sbjct: 130 DTGEQALEITDTLVRSNAVDILVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQSLRKLT 189

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            SI+RSKC+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD+D + G
Sbjct: 190 GSINRSKCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDRDEVVG 249

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N TRVKVVKNK+A PFKQVEFDIMYGEGIS  GE++DLGVKA IV+KSG+WFS+   R+G
Sbjct: 250 NSTRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGIVEKSGSWFSYDSIRIG 309

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           QGREN+K +L+EN EI + +E+ +R     VA+ ++  P
Sbjct: 310 QGRENAKTYLKENPEICDKLEAAIRGKTDEVAEEMMTGP 348


>gi|329890680|ref|ZP_08269023.1| protein RecA [Brevundimonas diminuta ATCC 11568]
 gi|328845981|gb|EGF95545.1| protein RecA [Brevundimonas diminuta ATCC 11568]
          Length = 351

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 236/336 (70%), Positives = 291/336 (86%), Gaps = 1/336 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK +ALEAA++QI R +GKG++M+LG  G + E IE VS+GSLGLD+ALGIGG P GR++
Sbjct: 7   DKQRALEAAIAQIDRAFGKGSVMKLGKAGQVAE-IESVSTGSLGLDMALGIGGLPVGRVI 65

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E++GPESSGKTTLALHT+A+ QK GG  AFVDAEHALD +YA+KLGV+L +LL+SQPD G
Sbjct: 66  EVFGPESSGKTTLALHTVAEVQKKGGVAAFVDAEHALDPVYAQKLGVNLDDLLVSQPDAG 125

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVDI+V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SI
Sbjct: 126 EQALEIVDTLVRSGAVDIVVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASI 185

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+SKCI++FINQ+R KIGVM+GSPETTTGGNALKFY+SVRLDIRR G+IK++D + GN T
Sbjct: 186 SKSKCIVLFINQIRHKIGVMYGSPETTTGGNALKFYASVRLDIRRTGAIKNRDEVVGNTT 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++V FDIMYGEGIS  GE+IDLGVKA+I++KSG+WFS+   R+GQGR
Sbjct: 246 RVKVVKNKVAPPFREVIFDIMYGEGISKIGEIIDLGVKANIIEKSGSWFSYDSTRIGQGR 305

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           EN+K FL+ N ++A  IE  +RQ+   +AD +L  P
Sbjct: 306 ENAKEFLKNNPDMALAIEKAVRQSTAKIADDMLGAP 341


>gi|254449721|ref|ZP_05063158.1| protein RecA [Octadecabacter antarcticus 238]
 gi|198264127|gb|EDY88397.1| protein RecA [Octadecabacter antarcticus 238]
          Length = 371

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 244/346 (70%), Positives = 285/346 (82%), Gaps = 2/346 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL++AL+QI+R +GKG+IM LG  G+  + IE  S+GSLGLDIALGIGG PKGR+V
Sbjct: 16  DKQKALDSALAQIERQFGKGSIMTLG--GNAIQEIESTSTGSLGLDIALGIGGIPKGRVV 73

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YA+KLGV+L  LLISQPDTG
Sbjct: 74  EIYGPESSGKTTLTLHCLAEEQKKGGVCAFVDAEHALDPGYAKKLGVNLDELLISQPDTG 133

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAV +IV+DSVAALTP++E+EGDMG+   G+ ARLMSQA+RKLT SI
Sbjct: 134 EQALEIVDTLVRSGAVSMIVVDSVAALTPKSELEGDMGDHSVGVHARLMSQAMRKLTGSI 193

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SR+KC ++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GS+KD+D I GN T
Sbjct: 194 SRTKCTVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKDRDEIVGNST 253

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+D+GVKA IV+KSG+WFS+  +R+GQGR
Sbjct: 254 RVKVVKNKVAPPFKQVEFDIMYGEGISKLGELVDMGVKAGIVEKSGSWFSYGDERIGQGR 313

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           EN+K FLREN   A  IE  +R   GL  D   ++     KD A K
Sbjct: 314 ENAKTFLRENPHFANEIEDKIRAAHGLDFDGATKKDCATKKDGAAK 359


>gi|254512103|ref|ZP_05124170.1| protein RecA [Rhodobacteraceae bacterium KLH11]
 gi|221535814|gb|EEE38802.1| protein RecA [Rhodobacteraceae bacterium KLH11]
          Length = 354

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 242/327 (74%), Positives = 283/327 (86%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL++AL+QI+R +GKG+IM+LG      + IE  S+GSLGLDIALGIGG P GRIV
Sbjct: 14  DKQKALDSALAQIERQFGKGSIMKLGEDAK--QDIEASSTGSLGLDIALGIGGLPMGRIV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD  YARKLGVDL  LLISQPDTG
Sbjct: 72  EIYGPESSGKTTLTLHCIAEQQKRGGVCAFVDAEHALDPQYARKLGVDLDELLISQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSGAV+++V+DSVAALTP++E+EGDMG+S  G+QARLMSQA+RKLT SI
Sbjct: 132 EQALEITDTLVRSGAVNMVVVDSVAALTPKSELEGDMGDSNVGVQARLMSQAMRKLTGSI 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D + GNQT
Sbjct: 192 SRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRDEVVGNQT 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGVKA +V+KSG+WFS+  +R+GQGR
Sbjct: 252 RVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVKAGVVEKSGSWFSYGDERIGQGR 311

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K +LR+N  IA +IE  +R   GL
Sbjct: 312 ENAKQYLRDNARIALDIEDKIRAAHGL 338


>gi|99081071|ref|YP_613225.1| recombinase A [Ruegeria sp. TM1040]
 gi|99037351|gb|ABF63963.1| recA protein [Ruegeria sp. TM1040]
          Length = 357

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 243/327 (74%), Positives = 283/327 (86%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL++AL+QI+R +GKG+IM+LG  G+  + IE  S+GSLGLDIALGIGG P GRIV
Sbjct: 15  DKQKALDSALAQIERQFGKGSIMKLGD-GTALQEIEASSTGSLGLDIALGIGGLPMGRIV 73

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD  YA+KLGVDL  LLISQPDTG
Sbjct: 74  EIYGPESSGKTTLTLHCIAEQQKKGGVCAFVDAEHALDPQYAKKLGVDLDELLISQPDTG 133

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSGAV+++++DSVAALTP++E+EGDMG+S  G+QARLMSQA+RKLT SI
Sbjct: 134 EQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSNVGVQARLMSQAMRKLTGSI 193

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SRSKC+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIKD+D + GN T
Sbjct: 194 SRSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIKDRDEVVGNAT 253

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGV A +V+KSGAWFS+  +R+GQGR
Sbjct: 254 RVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVAAGVVNKSGAWFSYGDERIGQGR 313

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K +LREN  IA  IE  +R   GL
Sbjct: 314 ENAKGYLRENSRIALEIEDKIRAAHGL 340


>gi|85708968|ref|ZP_01040034.1| recombinase A [Erythrobacter sp. NAP1]
 gi|85690502|gb|EAQ30505.1| recombinase A [Erythrobacter sp. NAP1]
          Length = 354

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 236/348 (67%), Positives = 294/348 (84%), Gaps = 8/348 (2%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VD+ KAL+AAL+QI R +GKG+ M+LGS+ ++   +E +S+GSLGLDIALGIGG PKGR+
Sbjct: 14  VDRQKALDAALAQIDRAFGKGSAMKLGSKEAM--QVESISTGSLGLDIALGIGGLPKGRV 71

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +E+YGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+KLGVD+  L++SQPDT
Sbjct: 72  IEVYGPESSGKTTLALHCIAEAQKAGGTAAFVDAEHALDPVYAKKLGVDIDELVVSQPDT 131

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRS AVD++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQ+LRKLT S
Sbjct: 132 GEQALEITDTLVRSNAVDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQSLRKLTGS 191

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I+RSKC+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD+D + GN 
Sbjct: 192 INRSKCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDRDEVIGNS 251

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEGIS  GE++DLGVKA IV+KSG+W+S+   R+GQG
Sbjct: 252 TRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGIVEKSGSWYSYDSVRIGQG 311

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           REN+K +L+EN E+ + +E+ +R     VA+ ++  P      DAD D
Sbjct: 312 RENAKTYLKENPEVCDKLEAAIRGKTDEVAEEMMTGP------DADTD 353


>gi|296282672|ref|ZP_06860670.1| recombinase A [Citromicrobium bathyomarinum JL354]
          Length = 354

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 236/342 (69%), Positives = 293/342 (85%), Gaps = 3/342 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           KE N VD+ KAL+AAL+QI R +GKG+ M+LGS+ ++   +E +S+GSLGLDIALGIGG 
Sbjct: 12  KETN-VDRQKALDAALAQIDRAFGKGSAMKLGSKETM--NVESISTGSLGLDIALGIGGL 68

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGR++E+YGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+KLGVD+  L++
Sbjct: 69  PKGRVIEVYGPESSGKTTLALHVIAEAQKAGGTAAFVDAEHALDPVYAKKLGVDIDELIV 128

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEITD LVRS A+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQ+LR
Sbjct: 129 SQPDTGEQALEITDTLVRSNAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQSLR 188

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT SI+RSKC+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD+D 
Sbjct: 189 KLTGSINRSKCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDRDE 248

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           I GN TRVKVVKNK+A PFKQVEFDIMYG+GIS  GE++DLGVKA +V+KSG+WFS+   
Sbjct: 249 IIGNSTRVKVVKNKVAPPFKQVEFDIMYGQGISKIGEILDLGVKAGVVEKSGSWFSYDSI 308

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           R+GQGREN+K FL+EN EI + +E+ +R     VA+ ++  P
Sbjct: 309 RIGQGRENAKTFLKENPEICDKLEAAIRGKTDDVAEEMMVGP 350


>gi|126737804|ref|ZP_01753534.1| recombinase A [Roseobacter sp. SK209-2-6]
 gi|126721197|gb|EBA17901.1| recombinase A [Roseobacter sp. SK209-2-6]
          Length = 355

 Score =  498 bits (1283), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 245/343 (71%), Positives = 290/343 (84%), Gaps = 5/343 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL++AL+QI+R +GKG+IM+LG  G+  + IE  S+GSLGLDIALGIGG P GRIV
Sbjct: 14  DKQKALDSALAQIERQFGKGSIMKLGD-GNAMQEIEASSTGSLGLDIALGIGGLPMGRIV 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD  YA KLGVDL  LLISQPDTG
Sbjct: 73  EIYGPESSGKTTLTLHCIAEQQKKGGVCAFVDAEHALDPQYAAKLGVDLDELLISQPDTG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSGAV+++++DSVAALTP++E+EGDMG+S  G+QARLMSQA+RKLT SI
Sbjct: 133 EQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSNVGVQARLMSQAMRKLTGSI 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +RSKC+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D + GNQT
Sbjct: 193 NRSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRDEVVGNQT 252

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGV A +V+KSGAWFS+  +R+GQGR
Sbjct: 253 RVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVAAGVVNKSGAWFSYGDERIGQGR 312

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           EN+K FLR++ E A +IE  +R   GL  D     P +  +DD
Sbjct: 313 ENAKQFLRDHPETAFDIEDKIRAAHGLDFD----RPELGGEDD 351


>gi|254486860|ref|ZP_05100065.1| protein RecA [Roseobacter sp. GAI101]
 gi|214043729|gb|EEB84367.1| protein RecA [Roseobacter sp. GAI101]
          Length = 356

 Score =  498 bits (1283), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 245/363 (67%), Positives = 299/363 (82%), Gaps = 16/363 (4%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD +K+    +K KAL++AL+QI+R +GKG+IM+LG+ G+I + I+  S+GSLGLDIALG
Sbjct: 9   MDNKKQ---AEKQKALDSALAQIERQFGKGSIMKLGAPGAI-QDIKSSSTGSLGLDIALG 64

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG P GRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YARKLGVD+ 
Sbjct: 65  IGGLPMGRIIEIYGPESSGKTTLTLHCVAEQQKAGGVCAFVDAEHALDPQYARKLGVDID 124

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LLISQPDTGEQALEI D LVRSGAV+++V+DSVAALTP++E+EGDMG+S  G+QARLMS
Sbjct: 125 ELLISQPDTGEQALEIVDTLVRSGAVNMVVVDSVAALTPKSELEGDMGDSSVGVQARLMS 184

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKLT SISRS C+++FINQ+RMKIGVMFGSPETT+GGNALKFYSSVRLDIRR+G++K
Sbjct: 185 QAMRKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTSGGNALKFYSSVRLDIRRIGALK 244

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D+D + GN TRVK+VKNK+A+PFKQVEFDIMYGEGIS  GEL+DLGVKA +VDKSG+WFS
Sbjct: 245 DRDEVVGNATRVKIVKNKVAAPFKQVEFDIMYGEGISKMGELLDLGVKAGVVDKSGSWFS 304

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           +  +R+GQGREN+K FLREN  +A  IE  +R   GL              D ++KDD D
Sbjct: 305 YGDERIGQGRENAKTFLRENEAMAMEIEDKIRAAHGL------------DFDGSEKDDID 352

Query: 361 NVE 363
            +E
Sbjct: 353 ILE 355


>gi|302382290|ref|YP_003818113.1| recA protein [Brevundimonas subvibrioides ATCC 15264]
 gi|302192918|gb|ADL00490.1| recA protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 367

 Score =  498 bits (1281), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 236/336 (70%), Positives = 291/336 (86%), Gaps = 1/336 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK +ALEAA++QI R +GKG++M+LG +G I + I  VS+GSLGLD+ALGIGG P+GR++
Sbjct: 23  DKQRALEAAIAQIDRAFGKGSVMKLG-KGGIADVIPSVSTGSLGLDMALGIGGLPRGRVI 81

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E++GPESSGKTTLALHT+A+ QK+GGT AFVDAEHALD  YA+KLGV+L +LL+SQPDTG
Sbjct: 82  EVFGPESSGKTTLALHTVAEIQKSGGTAAFVDAEHALDPGYAQKLGVNLDDLLVSQPDTG 141

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVDI+V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SI
Sbjct: 142 EQALEIVDTLVRSGAVDIVVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASI 201

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S CI++FINQ+R KIGVM+GSPETTTGGNALKFY+SVRLDIRR G+IKD+D + GN T
Sbjct: 202 SKSNCIVLFINQIRHKIGVMYGSPETTTGGNALKFYASVRLDIRRTGAIKDRDEVVGNTT 261

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++V FDIMYGEGIS  GE+IDLGVKA I++KSG+WFS+   R+GQGR
Sbjct: 262 RVKVVKNKVAPPFREVIFDIMYGEGISKLGEIIDLGVKAGIIEKSGSWFSYDSTRIGQGR 321

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           EN + FL+ N ++A  IE  +R++   +AD LL  P
Sbjct: 322 ENVRAFLKANPDMAAAIEDKVRKSTSKIADELLGTP 357


>gi|94496514|ref|ZP_01303090.1| recA protein [Sphingomonas sp. SKA58]
 gi|94423874|gb|EAT08899.1| recA protein [Sphingomonas sp. SKA58]
          Length = 384

 Score =  498 bits (1281), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 244/355 (68%), Positives = 296/355 (83%), Gaps = 5/355 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +D +K  N+ D+ KAL+AAL+QI R +GKG+ M+LGS+  I   IE +S+GSLGLDIALG
Sbjct: 35  IDSKKTGNM-DRQKALDAALAQIDRAFGKGSAMKLGSREKIE--IESISTGSLGLDIALG 91

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG PKGRI+EIYGPESSGKTTL LH IA++QK GGT AFVDAEHALD  YA+KLGVD+ 
Sbjct: 92  IGGLPKGRIIEIYGPESSGKTTLTLHAIAEAQKAGGTAAFVDAEHALDPAYAKKLGVDID 151

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            L++SQPDTGEQALEI D LVRS A+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMS
Sbjct: 152 ELIVSQPDTGEQALEIVDTLVRSNAIDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMS 211

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT SISRSKC+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IK
Sbjct: 212 QALRKLTGSISRSKCMVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIK 271

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D+D I GN TRVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+D+GVKA +V+KSGAWFS
Sbjct: 272 DRDDIVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKIGELLDIGVKAGLVEKSGAWFS 331

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           +   R+GQGREN+K +L+E+ E+A+ +E  +R     VAD ++  P  + +DD +
Sbjct: 332 YDSIRIGQGRENAKTYLKEHPELADRLEKAIRGKTEEVADGMMTGP--DAEDDGE 384


>gi|109254800|emb|CAK22262.1| recombinase A [Pseudochrobactrum kiredjianiae]
          Length = 299

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 233/300 (77%), Positives = 275/300 (91%), Gaps = 1/300 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           +AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG PKGRIVEIYGPE
Sbjct: 1   DAALSQIERSFGKGSIMRLGQNDKVVE-IETVSTGSLSLDIALGVGGLPKGRIVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI
Sbjct: 60  SSGKTTMALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S  +
Sbjct: 120 TDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNTM 179

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IK++D + GNQTR+KVVK
Sbjct: 180 VIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKERDEVVGNQTRIKVVK 239

Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316
           NK+A PFKQVEFDIMYG+G+S  GEL+DLGVKA IV+KSG+WFS+  QRLGQGR+N+K F
Sbjct: 240 NKLAPPFKQVEFDIMYGQGVSKTGELVDLGVKAGIVEKSGSWFSYNSQRLGQGRDNAKNF 299


>gi|163736399|ref|ZP_02143818.1| recA protein [Phaeobacter gallaeciensis BS107]
 gi|163741066|ref|ZP_02148458.1| recombinase A [Phaeobacter gallaeciensis 2.10]
 gi|161385419|gb|EDQ09796.1| recombinase A [Phaeobacter gallaeciensis 2.10]
 gi|161390269|gb|EDQ14619.1| recA protein [Phaeobacter gallaeciensis BS107]
          Length = 355

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 242/330 (73%), Positives = 281/330 (85%), Gaps = 1/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL++AL+QI+R +GKG+IM+LG  G+    IE  S+GSLGLDIALGIGG P GRIV
Sbjct: 15  DKQKALDSALAQIERQFGKGSIMKLGD-GNPLNEIEASSTGSLGLDIALGIGGLPMGRIV 73

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD  YA KLGVDL  LLISQPDTG
Sbjct: 74  EIYGPESSGKTTLTLHCIAEQQKKGGVCAFVDAEHALDPQYAAKLGVDLDELLISQPDTG 133

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSGAV+++++DSVAALTP++E+EGDMG+S  G+QARLMSQA+RKLT SI
Sbjct: 134 EQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSSVGVQARLMSQAMRKLTGSI 193

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D + GN T
Sbjct: 194 SRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRDEVVGNAT 253

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGV A +V KSGAWFS+  +R+GQGR
Sbjct: 254 RVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVAAGVVAKSGAWFSYGDERIGQGR 313

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           EN+K +LREN  IA +IE  +R   GL  D
Sbjct: 314 ENAKTYLRENAHIAYDIEDKIRAAHGLEFD 343


>gi|84686865|ref|ZP_01014749.1| recombinase A [Maritimibacter alkaliphilus HTCC2654]
 gi|84665062|gb|EAQ11542.1| recombinase A [Rhodobacterales bacterium HTCC2654]
          Length = 361

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 246/353 (69%), Positives = 290/353 (82%), Gaps = 11/353 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL++AL+QI+R +GKG+IM+LG+   + E I   S+GSLGLDIALGIGG PKGRI+
Sbjct: 19  EKQKALDSALAQIERQFGKGSIMKLGADNPVAE-IASTSTGSLGLDIALGIGGLPKGRII 77

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YA++LGVDL  LLISQPDTG
Sbjct: 78  EIYGPESSGKTTLTLHCVAEEQKKGGVCAFVDAEHALDPQYAKRLGVDLDELLISQPDTG 137

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAV+++V+DSVAALTP++E+EGDMG+S  G+QARLMSQA+RKLT SI
Sbjct: 138 EQALEIVDTLVRSGAVNMVVVDSVAALTPKSELEGDMGDSSVGVQARLMSQAMRKLTGSI 197

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D + GN T
Sbjct: 198 ARSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRDEVVGNAT 257

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGVKA +V+KSGAWFS+  +R+GQGR
Sbjct: 258 RVKVVKNKVAPPFKQVEFDIMYGEGISKTGELLDLGVKAGVVEKSGAWFSYGDERIGQGR 317

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           ENSK FL+EN  IA  IE  +R   GL  D             AD DD D VE
Sbjct: 318 ENSKTFLKENPSIALEIEDKIRAAHGLDFD----------MGGADFDDADVVE 360


>gi|254475519|ref|ZP_05088905.1| protein RecA [Ruegeria sp. R11]
 gi|214029762|gb|EEB70597.1| protein RecA [Ruegeria sp. R11]
          Length = 355

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 243/330 (73%), Positives = 281/330 (85%), Gaps = 1/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL++AL+QI+R +GKG+IM+LG  G+    IE  S+GSLGLDIALGIGG P GRIV
Sbjct: 15  DKQKALDSALAQIERQFGKGSIMKLGD-GNPLNEIEASSTGSLGLDIALGIGGLPMGRIV 73

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD  YA KLGVDL  LLISQPDTG
Sbjct: 74  EIYGPESSGKTTLTLHCIAEQQKKGGVCAFVDAEHALDPQYAAKLGVDLDELLISQPDTG 133

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSGAV+++++DSVAALTP++E+EGDMG+S  G+QARLMSQA+RKLT SI
Sbjct: 134 EQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSNVGVQARLMSQAMRKLTGSI 193

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D + GN T
Sbjct: 194 SRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRDEVVGNAT 253

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGV A +V KSGAWFS+  +R+GQGR
Sbjct: 254 RVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVAAGVVAKSGAWFSYGDERIGQGR 313

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           EN+K FLREN  IA +IE  +R   GL  D
Sbjct: 314 ENAKTFLRENPHIAYDIEDKIRAAHGLEFD 343


>gi|255264284|ref|ZP_05343626.1| protein RecA [Thalassiobium sp. R2A62]
 gi|255106619|gb|EET49293.1| protein RecA [Thalassiobium sp. R2A62]
          Length = 362

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 239/327 (73%), Positives = 280/327 (85%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL++AL+QI+R +GKG+IM+LG + +I E IE  S+GSLGLDIALGIGG PKGR+V
Sbjct: 16  DKQKALDSALAQIERQFGKGSIMKLGGENAIQE-IESTSTGSLGLDIALGIGGIPKGRVV 74

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YARKLGV+L  LLISQPDTG
Sbjct: 75  EIYGPESSGKTTLTLHCVAEEQKKGGVCAFVDAEHALDPQYARKLGVNLDELLISQPDTG 134

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAV +IV+DSVAALTP++E+EGDMG+S  G+ ARLMSQA+RKLT SI
Sbjct: 135 EQALEIVDTLVRSGAVSMIVVDSVAALTPKSELEGDMGDSSVGVHARLMSQAMRKLTGSI 194

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +R+ C ++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++KD+D + GN T
Sbjct: 195 NRTNCTVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGALKDRDEVVGNAT 254

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGVKA IVDKSGAWFS+  +R+GQGR
Sbjct: 255 RVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVKAGIVDKSGAWFSYGDERIGQGR 314

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K +L+EN   A  IE  +R   GL
Sbjct: 315 ENAKTYLKENTRTALEIEDKIRAAHGL 341


>gi|254419524|ref|ZP_05033248.1| protein RecA [Brevundimonas sp. BAL3]
 gi|196185701|gb|EDX80677.1| protein RecA [Brevundimonas sp. BAL3]
          Length = 359

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 234/336 (69%), Positives = 291/336 (86%), Gaps = 1/336 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK +ALEAA++QI R +GKG++M+LG +G + + I  VS+GSLGLD+ALGIGG P+GR++
Sbjct: 15  DKQRALEAAIAQIDRAFGKGSVMKLG-KGGVADVIPSVSTGSLGLDMALGIGGLPRGRVI 73

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E++GPESSGKTTLALHT+A+ QK GGT AFVDAEHALD  YA+KLGV+L +LL+SQPDTG
Sbjct: 74  EVFGPESSGKTTLALHTVAEVQKAGGTAAFVDAEHALDPGYAQKLGVNLDDLLVSQPDTG 133

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVDI+V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SI
Sbjct: 134 EQALEIVDTLVRSGAVDIVVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASI 193

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S CI++FINQ+R KIGVM+GSPETTTGGNALKFY+SVRLDIRR G+IK++D + GN T
Sbjct: 194 SKSNCIVLFINQIRHKIGVMYGSPETTTGGNALKFYASVRLDIRRTGAIKNRDEVVGNTT 253

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++V FDIMYGEGIS  GE+IDLGVKA +++KSG+WFS+   R+GQGR
Sbjct: 254 RVKVVKNKVAPPFREVIFDIMYGEGISKLGEIIDLGVKAGVIEKSGSWFSYDSTRIGQGR 313

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           EN + FL++N +IA +IE  +R +   +AD LL  P
Sbjct: 314 ENVREFLKQNPDIAASIEKAVRASTSKIADELLGTP 349


>gi|294013267|ref|YP_003546727.1| recombination protein RecA [Sphingobium japonicum UT26S]
 gi|292676597|dbj|BAI98115.1| recombination protein RecA [Sphingobium japonicum UT26S]
          Length = 357

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 239/351 (68%), Positives = 292/351 (83%), Gaps = 4/351 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K+   +D+ KALEAALSQI R +GKG+ M+LGS+  I   IE +S+GSLGLDIALGIGG 
Sbjct: 11  KKTGTMDRQKALEAALSQIDRAFGKGSAMKLGSREKIE--IEAISTGSLGLDIALGIGGL 68

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GRIVEIYGPESSGKTTLALH IA++QK GG  AFVDAEHALD  YA+KLGVD+  L++
Sbjct: 69  PRGRIVEIYGPESSGKTTLALHAIAEAQKAGGIAAFVDAEHALDPGYAKKLGVDIDELIV 128

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D LVRS A+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALR
Sbjct: 129 SQPDTGEQALEIVDTLVRSNAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 188

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT SISRS+C+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD++ 
Sbjct: 189 KLTGSISRSRCLVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDRED 248

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           I GN TRVKVVKNK+A PFKQVEFDIMYGEG+S  GEL+D+GVKA +V+KSGAWFS+   
Sbjct: 249 IVGNATRVKVVKNKVAPPFKQVEFDIMYGEGVSKIGELLDIGVKAGLVEKSGAWFSYDSV 308

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           R+GQGREN+K +L+E+ E+AE +E  +R     VA+ ++  P    +DD +
Sbjct: 309 RIGQGRENAKTYLKEHPEMAERLEKAIRGKTEEVAEGMMAGP--EAEDDGE 357


>gi|149184397|ref|ZP_01862715.1| recombinase A [Erythrobacter sp. SD-21]
 gi|148831717|gb|EDL50150.1| recombinase A [Erythrobacter sp. SD-21]
          Length = 341

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 231/336 (68%), Positives = 287/336 (85%), Gaps = 2/336 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+AAL+QI R +GKG+ M+LG + ++   +E +S+GSLGLDIALGIGG PKGR++
Sbjct: 4   DRQKALDAALAQIDRAFGKGSAMKLGQKEAM--NVEAISTGSLGLDIALGIGGLPKGRVI 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+KLGVD+  L++SQPDTG
Sbjct: 62  EVYGPESSGKTTLALHAIAEAQKAGGTAAFVDAEHALDPVYAKKLGVDVDELIVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRS A+DI+V+DSVAAL PRAEIEG+MG+S  G+QARLMSQ+LRKLT SI
Sbjct: 122 EQALEITDTLVRSNAIDILVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQSLRKLTGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +RSKC+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD+D + GN T
Sbjct: 182 NRSKCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDRDEVIGNST 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDIMYGEGIS  GE++DLGVKA +V+KSG+WFS+   R+GQGR
Sbjct: 242 RVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGVVEKSGSWFSYDSVRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           EN+K FL+EN E+   +E+ +R     VA+ ++  P
Sbjct: 302 ENAKTFLKENPEMCAKLEAAIRGKTDEVAEEMMAGP 337


>gi|294083658|ref|YP_003550415.1| RecA DNA recombination protein [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663230|gb|ADE38331.1| RecA DNA recombination protein [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 367

 Score =  495 bits (1275), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 243/333 (72%), Positives = 295/333 (88%), Gaps = 1/333 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK++ALEAA+ QI++ +GKG++M+LG + S  + ++ +S+GSLGLDI LGIGGFPKGRIV
Sbjct: 14  DKNQALEAAIGQIEKAFGKGSVMKLGQRESAVD-VQSISTGSLGLDIGLGIGGFPKGRIV 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH +A++QK GG CAFVDAEHALD  YA+KLGV++ +LLISQPD G
Sbjct: 73  EIYGPESSGKTTLALHAVAEAQKEGGNCAFVDAEHALDPAYAKKLGVNIDDLLISQPDAG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGA+D++V+DSVAAL PRAE+EG+MG+   G+QARLMSQALRKLTSSI
Sbjct: 133 EQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDHHVGLQARLMSQALRKLTSSI 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +RS C+++FINQ+R+KIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IKD+D + GNQT
Sbjct: 193 ARSNCLVIFINQIRLKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKDRDEVVGNQT 252

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PF+ VEFDIMYGEGIS  GEL+DLGV A IV+KSGAW S+KG RLGQGR
Sbjct: 253 RVKVVKNKVAAPFRTVEFDIMYGEGISKMGELLDLGVAAGIVEKSGAWISYKGDRLGQGR 312

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343
           EN+K FLREN EIA  IES +RQNAGLV D++L
Sbjct: 313 ENAKNFLRENTEIANEIESAIRQNAGLVGDAML 345


>gi|149202695|ref|ZP_01879667.1| recombinase A [Roseovarius sp. TM1035]
 gi|149143977|gb|EDM32011.1| recombinase A [Roseovarius sp. TM1035]
          Length = 357

 Score =  495 bits (1274), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 238/327 (72%), Positives = 282/327 (86%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL++AL+QI+R +GKG+IM+LG   ++ + IE  S+GSLGLDIALGIGG PKGRIV
Sbjct: 16  DKQKALDSALAQIERQFGKGSIMKLGGDNAVKD-IEATSTGSLGLDIALGIGGIPKGRIV 74

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD +YARKLGVDL  LLISQPDTG
Sbjct: 75  EIYGPESSGKTTLTLHCVAEEQKKGGVCAFVDAEHALDPVYARKLGVDLDELLISQPDTG 134

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAV +IV+DSVAALTP++E+EG+MG+S  G+ ARLMSQA+RKLT SI
Sbjct: 135 EQALEIVDTLVRSGAVSMIVVDSVAALTPKSELEGEMGDSSVGVHARLMSQAMRKLTGSI 194

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SR+ C ++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIKD+D + GN T
Sbjct: 195 SRTNCTVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIKDRDEVVGNTT 254

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDIM+GEGIS  GELID+GVKA +V+KSG+W+S+  QR+GQGR
Sbjct: 255 RVKVVKNKVAPPFKQVEFDIMFGEGISKTGELIDIGVKAGVVEKSGSWYSYGDQRIGQGR 314

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K FLR+N  +A  IE  +R + GL
Sbjct: 315 ENTKGFLRDNPAMAIEIEDKIRASHGL 341


>gi|332185210|ref|ZP_08386959.1| protein RecA [Sphingomonas sp. S17]
 gi|332014934|gb|EGI56990.1| protein RecA [Sphingomonas sp. S17]
          Length = 346

 Score =  494 bits (1273), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 231/343 (67%), Positives = 294/343 (85%), Gaps = 4/343 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+AAL+QI R +GKG+ M+LG + ++   +E +S+GSLGLDIALG+GG P+GR++
Sbjct: 7   DRQKALDAALAQIDRAFGKGSAMKLGQKETM--QVEAISTGSLGLDIALGVGGLPRGRVI 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+KLGV++  L++SQPDTG
Sbjct: 65  EVYGPESSGKTTLALHVIAEAQKMGGTAAFVDAEHALDPVYAKKLGVNIDELIVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRS A+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQ+LRKLT SI
Sbjct: 125 EQALEITDTLVRSNAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQSLRKLTGSI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SRS+C+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD++ ITGN T
Sbjct: 185 SRSRCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDREDITGNTT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDIMYGEGIS  GE++DLGVKA +V+KSG+WFS+   R+GQGR
Sbjct: 245 RVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGLVEKSGSWFSYDSVRIGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           EN+K +LREN ++A+ +E  +RQ    VA+ ++  P  + +DD
Sbjct: 305 ENAKNYLRENPDMADRLERAIRQRTEQVAEEMMTGP--DAEDD 345


>gi|254436817|ref|ZP_05050311.1| protein RecA [Octadecabacter antarcticus 307]
 gi|198252263|gb|EDY76577.1| protein RecA [Octadecabacter antarcticus 307]
          Length = 359

 Score =  494 bits (1273), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 242/344 (70%), Positives = 286/344 (83%), Gaps = 4/344 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL++AL+QI+R +GKG+IM LG  GS  + IE  S+GSLGLDIALGIGG PKGR+V
Sbjct: 16  DKQKALDSALAQIERQFGKGSIMTLG--GSAVQEIESTSTGSLGLDIALGIGGIPKGRVV 73

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH +A+ QK GG CAF+DAEHALD  YA+KLGV+L +LLISQPDTG
Sbjct: 74  EIYGPESSGKTTLTLHCLAEEQKKGGVCAFIDAEHALDPGYAKKLGVNLDDLLISQPDTG 133

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGA+ +IV+DSVAALTP++E+EGDMG+   G+ ARLMSQA+RKLT SI
Sbjct: 134 EQALEIVDTLVRSGAISMIVVDSVAALTPKSELEGDMGDHSVGVHARLMSQAMRKLTGSI 193

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SR+KC ++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GS+KD+D I GN T
Sbjct: 194 SRTKCTVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKDRDEIVGNST 253

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK VEFDIMYGEGIS  GEL+D+GVKA IV+KSG+WFS+  +R+GQGR
Sbjct: 254 RVKVVKNKVAPPFKVVEFDIMYGEGISKLGELVDMGVKAGIVEKSGSWFSYGDERIGQGR 313

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           EN+K FLREN   A  IE  +R   GL  D   ++P    +DDA
Sbjct: 314 ENAKTFLRENQHFAIEIEDKIRAAHGLDFDGAPKKPG--KEDDA 355


>gi|307295018|ref|ZP_07574860.1| recA protein [Sphingobium chlorophenolicum L-1]
 gi|306879492|gb|EFN10710.1| recA protein [Sphingobium chlorophenolicum L-1]
          Length = 357

 Score =  494 bits (1273), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 238/351 (67%), Positives = 292/351 (83%), Gaps = 4/351 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K+   +D+ KALEAALSQI R +GKG+ M+LGS+  I   IE +S+GSLGLDIALGIGG 
Sbjct: 11  KKTGTMDRQKALEAALSQIDRAFGKGSAMKLGSREKIE--IEAISTGSLGLDIALGIGGL 68

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GRI+EIYGPESSGKTTLALH IA++QKTGG  AFVDAEHALD  YA+KLGVD+  L++
Sbjct: 69  PRGRIIEIYGPESSGKTTLALHAIAEAQKTGGIAAFVDAEHALDPGYAKKLGVDIDELIV 128

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D LVRS A+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALR
Sbjct: 129 SQPDTGEQALEIVDTLVRSNAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 188

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT SISRSKC+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD++ 
Sbjct: 189 KLTGSISRSKCMVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDRED 248

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           I GN TRVKVVKNK+A PFKQVEFDIMYGEG+S  GEL+D+GVK  +V+KSGAWFS+   
Sbjct: 249 IVGNATRVKVVKNKVAPPFKQVEFDIMYGEGVSKIGELLDIGVKTGLVEKSGAWFSYDSV 308

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           R+GQGREN+K +L+E+ E+A+ +E  +R     VA+ ++  P    +DD +
Sbjct: 309 RIGQGRENAKTYLKEHPEMADKLEKAIRGKTEEVAEGMMAGP--EAEDDGE 357


>gi|85703237|ref|ZP_01034341.1| recombinase A [Roseovarius sp. 217]
 gi|85672165|gb|EAQ27022.1| recombinase A [Roseovarius sp. 217]
          Length = 357

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 236/327 (72%), Positives = 281/327 (85%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL++AL+QI+R +GKG+IM+LG +  I + IE  S+GSLGLDIALGIGG PKGRIV
Sbjct: 16  DKQKALDSALAQIERQFGKGSIMKLGGENPIKD-IESTSTGSLGLDIALGIGGIPKGRIV 74

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL LH +A+ QK GG CAFVDAEHALD IYARKLGVDL  LLISQPDTG
Sbjct: 75  EVYGPESSGKTTLTLHCVAEEQKKGGVCAFVDAEHALDPIYARKLGVDLDELLISQPDTG 134

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAV +IV+DSVAALTP++E+EG+MG+S  G+ ARLMSQA+RKLT SI
Sbjct: 135 EQALEIVDTLVRSGAVSMIVVDSVAALTPKSELEGEMGDSSVGVHARLMSQAMRKLTGSI 194

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SR+ C ++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++KD+D I GN T
Sbjct: 195 SRTNCTVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKDRDEIVGNAT 254

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+D+GVKA +V+KSG+W+S+  +R+GQGR
Sbjct: 255 RVKVVKNKVAPPFKQVEFDIMYGEGISKTGELVDMGVKAGVVEKSGSWYSYGDERIGQGR 314

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K +LR+N   A  IE  +R + GL
Sbjct: 315 ENAKTYLRDNPATALEIEDKIRASHGL 341


>gi|294677288|ref|YP_003577903.1| RecA protein [Rhodobacter capsulatus SB 1003]
 gi|294476108|gb|ADE85496.1| RecA protein [Rhodobacter capsulatus SB 1003]
          Length = 355

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 241/335 (71%), Positives = 284/335 (84%), Gaps = 4/335 (1%)

Query: 6   EMN---IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
           EMN     DK KALE+AL+QI+R +GKG+IM+LG      E IE  S+GSLGLDIALGIG
Sbjct: 8   EMNDKGKADKQKALESALAQIERQFGKGSIMKLGGDTPPPE-IEATSTGSLGLDIALGIG 66

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G PKGRIVEIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD  YA+KLGV L++L
Sbjct: 67  GLPKGRIVEIYGPESSGKTTLTLHCIAEEQKKGGVCAFVDAEHALDPYYAKKLGVSLEDL 126

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           LISQPDTGEQALEI D LVRSGAV ++V+DSVAALTP+AEIEGDMG++  G QARLMSQA
Sbjct: 127 LISQPDTGEQALEIVDTLVRSGAVSLVVVDSVAALTPKAEIEGDMGDATVGAQARLMSQA 186

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           +RKLT+SI RS C+++FINQ+RMKIGVMFGSPETT+GGNALKFY+SVRLDIRR G+IKD+
Sbjct: 187 MRKLTASIGRSNCMVIFINQIRMKIGVMFGSPETTSGGNALKFYASVRLDIRRTGAIKDR 246

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           D + GNQTRVKVVKNK+A PF++VEFDI+YGEGIS  GEL+DLGVKA +V KSGAW+S+ 
Sbjct: 247 DEVIGNQTRVKVVKNKVAPPFREVEFDILYGEGISKVGELVDLGVKAGVVAKSGAWYSYG 306

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
            +R+GQGREN+K FLR+N +IA  IE  +R + GL
Sbjct: 307 DERIGQGRENAKQFLRDNPDIAYEIEDKIRASHGL 341


>gi|89054477|ref|YP_509928.1| recombinase A [Jannaschia sp. CCS1]
 gi|88864026|gb|ABD54903.1| recA protein [Jannaschia sp. CCS1]
          Length = 357

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 238/327 (72%), Positives = 281/327 (85%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL++AL+QI+R +GKG+IM+LG   ++ + IE  S+GSLGLDIALGIGG PKGR++
Sbjct: 16  DKQKALDSALAQIERQFGKGSIMKLGGD-NVLKDIEATSTGSLGLDIALGIGGLPKGRVI 74

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD  YARKLGV+L  LLISQPDTG
Sbjct: 75  EIYGPESSGKTTLTLHAIAEEQKKGGVCAFVDAEHALDPQYARKLGVNLDELLISQPDTG 134

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAV ++V+DSVAALTP++E+EGDMG+S  G+ ARLMSQA+RKLT SI
Sbjct: 135 EQALEIVDTLVRSGAVSMVVVDSVAALTPKSELEGDMGDSSVGVHARLMSQAMRKLTGSI 194

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +RS C++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D + GN T
Sbjct: 195 NRSGCMVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRDEVVGNTT 254

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDIMYGEGIS  GELID+GVKA IV+KSG+WFS+  +R+GQGR
Sbjct: 255 RVKVVKNKVAPPFKQVEFDIMYGEGISKNGELIDMGVKAGIVEKSGSWFSYGDERVGQGR 314

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K F+R+N  IA  IE  +R   GL
Sbjct: 315 ENAKQFMRDNPAIAYEIEDKIRAAHGL 341


>gi|103487210|ref|YP_616771.1| recombinase A [Sphingopyxis alaskensis RB2256]
 gi|98977287|gb|ABF53438.1| recA protein [Sphingopyxis alaskensis RB2256]
          Length = 360

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 234/350 (66%), Positives = 293/350 (83%), Gaps = 2/350 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K +N  D+ KAL+AAL+QI R +GKG++M+LGS+ ++   +E VS+GSLGLDIALG+GG 
Sbjct: 12  KAVNGTDRQKALDAALAQIDRAFGKGSVMKLGSKEAM--QVEAVSTGSLGLDIALGVGGL 69

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GR++EIYGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YARKLGVD+  L++
Sbjct: 70  PRGRVIEIYGPESSGKTTLALHCIAEAQKIGGTAAFVDAEHALDPVYARKLGVDIDELIV 129

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D LVRS A+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQ+LR
Sbjct: 130 SQPDTGEQALEIVDTLVRSNAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQSLR 189

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT SISRS+C+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IK+ D 
Sbjct: 190 KLTGSISRSRCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKNGDE 249

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           I GN TRVKVVKNK+A PFKQVEFDIMYG+GIS  GE++D+GVKA +V+KSGAWFS+   
Sbjct: 250 IVGNTTRVKVVKNKVAPPFKQVEFDIMYGQGISKIGEILDIGVKAGLVEKSGAWFSYDSI 309

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           R+GQGREN+K FL+EN E+   +E+ +R     VA+ ++  P  +   DA
Sbjct: 310 RIGQGRENAKTFLKENPELMGRLEAAIRGRTDAVAEEMMAGPDDDVGGDA 359


>gi|1172889|sp|P42447|RECA_RHOCA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|558631|emb|CAA57673.1| recA [Rhodobacter capsulatus]
 gi|1581748|prf||2117248A recA gene
          Length = 355

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 241/335 (71%), Positives = 283/335 (84%), Gaps = 4/335 (1%)

Query: 6   EMN---IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
           EMN     DK KALE AL+QI+R +GKG+IM+LG      E IE  S+GSLGLDIALGIG
Sbjct: 8   EMNDKGKADKQKALECALAQIERQFGKGSIMKLGGDTPPPE-IEATSTGSLGLDIALGIG 66

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G PKGRIVEIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD  YA+KLGV L++L
Sbjct: 67  GLPKGRIVEIYGPESSGKTTLTLHCIAEEQKKGGVCAFVDAEHALDPYYAKKLGVSLEDL 126

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           LISQPDTGEQALEI D LVRSGAV ++V+DSVAALTP+AEIEGDMG++  G QARLMSQA
Sbjct: 127 LISQPDTGEQALEIVDTLVRSGAVSLVVVDSVAALTPKAEIEGDMGDATVGAQARLMSQA 186

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           +RKLT+SI RS C+++FINQ+RMKIGVMFGSPETT+GGNALKFY+SVRLDIRR G+IKD+
Sbjct: 187 MRKLTASIGRSNCMVIFINQIRMKIGVMFGSPETTSGGNALKFYASVRLDIRRTGAIKDR 246

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           D + GNQTRVKVVKNK+A PF++VEFDI+YGEGIS  GEL+DLGVKA +V KSGAW+S+ 
Sbjct: 247 DEVIGNQTRVKVVKNKVAPPFREVEFDILYGEGISKVGELVDLGVKAGVVAKSGAWYSYG 306

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
            +R+GQGREN+K FLR+N +IA  IE  +R + GL
Sbjct: 307 DERIGQGRENAKQFLRDNPDIAYEIEDKIRASHGL 341


>gi|132219|sp|P16034|RECA_MAGMG RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|38868|emb|CAA35243.1| unnamed protein product [Magnetospirillum magnetotacticum]
          Length = 344

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 236/340 (69%), Positives = 289/340 (85%), Gaps = 2/340 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +D+ KALEAA+SQI+R +GKG+IM+LG +  + E  EVVS+  LGLD+ALGIGG P+GRI
Sbjct: 1   MDRQKALEAAVSQIERAFGKGSIMKLGGKDQVVE-TEVVSTRILGLDVALGIGGVPRGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +E+YGPESSGKTTLALH IA++QK GGTCAFVDAEHALD  YARKLG  L  LLIS+PD 
Sbjct: 60  IEVYGPESSGKTTLALHIIAEAQKKGGTCAFVDAEHALDPSYARKLGA-LDELLISEPDA 118

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVR GAVD++V+DSVAAL PR E+EG+MG++  G+ ARLMSQALRKLT S
Sbjct: 119 GEQALEIADTLVRPGAVDVLVVDSVAALVPRGELEGEMGDNHMGLHARLMSQALRKLTGS 178

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +S+SK I++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR++IRRVG+IKD+D + GNQ
Sbjct: 179 VSKSKTIVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMEIRRVGAIKDRDEVVGNQ 238

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFK V+FDIMYGEGIS  GELIDLGVKA++V KSGAWFS+   R+GQG
Sbjct: 239 TRVKVVKNKLAPPFKVVDFDIMYGEGISKMGELIDLGVKANVVKKSGAWFSYNSTRIGQG 298

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
           REN+K FLR+N  +A  IE  +RQNAGL++++L   P ++
Sbjct: 299 RENAKQFLRDNPAMAAEIEGAIRQNAGLISEALAAVPDLD 338


>gi|330428558|gb|AEC19892.1| hypothetical protein PT7_1352 [Pusillimonas sp. T7-7]
          Length = 355

 Score =  491 bits (1265), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 239/353 (67%), Positives = 294/353 (83%), Gaps = 2/353 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD +      ++SKAL AALSQI++ +GKG++M+ G   ++   I+VVS+GSLGLD+ALG
Sbjct: 1   MDDKNSKAAGERSKALAAALSQIEKQFGKGSVMRYGDD-TVEHDIQVVSTGSLGLDVALG 59

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGTCAF+DAEHALD  YA KLGV+L 
Sbjct: 60  VGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKIGGTCAFIDAEHALDVQYASKLGVNLA 119

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +LLISQPDTGEQALEITD LVRSG+VD+IVIDSVAAL P+AEIEGDMG+SLPG+QARLMS
Sbjct: 120 DLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPKAEIEGDMGDSLPGLQARLMS 179

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT++I R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIK
Sbjct: 180 QALRKLTANIKRANCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIK 239

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             D I GN+TRVKVVKNK+A PFKQ EFDIMYG GIS  GE+IDLGV+A IVDK+GAWFS
Sbjct: 240 KGDEIVGNETRVKVVKNKVAPPFKQAEFDIMYGGGISREGEIIDLGVQAGIVDKAGAWFS 299

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           + G R+GQG++NS+ +L+E+ E+A  IE+ +R+  G++   +     + T DD
Sbjct: 300 YSGTRIGQGKDNSREYLKEHPEMAFEIENRVREQLGVIP-QVAANKTVQTTDD 351


>gi|119383349|ref|YP_914405.1| recombinase A [Paracoccus denitrificans PD1222]
 gi|119373116|gb|ABL68709.1| recA protein [Paracoccus denitrificans PD1222]
          Length = 356

 Score =  491 bits (1263), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 234/327 (71%), Positives = 282/327 (86%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL++AL+QI+R +GKG+IM+LG+   + E IE  S+GSLGLDIALGIGG PKGRI+
Sbjct: 16  DKQKALDSALAQIERQFGKGSIMKLGADNPVAE-IEATSTGSLGLDIALGIGGLPKGRII 74

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YA+KLGV+L  LLISQPDTG
Sbjct: 75  EIFGPESSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLISQPDTG 134

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAV ++V+DSVAALTP++EIEGDMG+   G QARLMSQA+RKLT+SI
Sbjct: 135 EQALEIVDTLVRSGAVSLVVVDSVAALTPKSEIEGDMGDMQMGSQARLMSQAMRKLTASI 194

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR GSIKD+D +TGN T
Sbjct: 195 GRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRAGSIKDRDEVTGNAT 254

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+QVEFDIMYGEGIS  GELIDLG+KA +V+KSG+W+S+  +R+GQGR
Sbjct: 255 RVKVVKNKVAPPFRQVEFDIMYGEGISKVGELIDLGIKAGVVEKSGSWYSYGDERIGQGR 314

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K FLR++ ++A  IE  +R + GL
Sbjct: 315 ENAKQFLRDHPDMAHAIEDKIRASHGL 341


>gi|117924908|ref|YP_865525.1| recA protein [Magnetococcus sp. MC-1]
 gi|117608664|gb|ABK44119.1| RecA protein [Magnetococcus sp. MC-1]
          Length = 390

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 238/342 (69%), Positives = 290/342 (84%), Gaps = 3/342 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKSKAL+AAL+QI+R +GKG+IM++ S+G+  + I VVS+GSLGLDIALG+GG P+GRIV
Sbjct: 15  DKSKALDAALAQIERQFGKGSIMRM-SEGAATD-IPVVSTGSLGLDIALGVGGLPRGRIV 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH  A+ QK GG  AFVDAEHALD IYARKLGV++  L+ISQPDTG
Sbjct: 73  EVYGPESSGKTTMALHVAAEIQKVGGVAAFVDAEHALDPIYARKLGVNVDELIISQPDTG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSGAVD++V+DSVAALTPRAE+EG+MG+S  G+QARLMSQALRKLT SI
Sbjct: 133 EQALEITDMLVRSGAVDLVVVDSVAALTPRAELEGEMGDSHVGLQARLMSQALRKLTGSI 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SRS  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIKDK+ + GN+T
Sbjct: 193 SRSSSLVLFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKDKEEVVGNRT 252

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PF+Q EFDI YG+G+S  GEL+D+GV+  +V+KSGAW+S+ G+R+GQGR
Sbjct: 253 RVKVVKNKMAPPFRQCEFDITYGQGVSLHGELLDMGVEMGVVEKSGAWYSYDGERIGQGR 312

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA-DSLLQEPAINTK 351
           EN+K ++ EN   A  +E  +R   GL A     Q PA  TK
Sbjct: 313 ENAKRYMAENPSAAMKLEDQIRLKEGLSAKHGAGQSPATETK 354


>gi|114771070|ref|ZP_01448510.1| recombinase A [alpha proteobacterium HTCC2255]
 gi|114548352|gb|EAU51238.1| recombinase A [alpha proteobacterium HTCC2255]
          Length = 362

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 241/353 (68%), Positives = 289/353 (81%), Gaps = 7/353 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK KALE+AL QI+R +GKG+IM+LG + +  + IE  S+GSLGLDIALGIGG PKGRI
Sbjct: 14  MDKEKALESALGQIERQFGKGSIMKLGDESARLD-IEATSTGSLGLDIALGIGGLPKGRI 72

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD  YA++LGVD+  LLISQPD 
Sbjct: 73  IEIYGPESSGKTTLTLHAIAEEQKKGGVCAFVDAEHALDPTYAKRLGVDIDELLISQPDA 132

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAV ++V+DSVAALTPRAE+EGDMG+   G QARLMSQA+RKLT S
Sbjct: 133 GEQALEITDTLVRSGAVSMVVVDSVAALTPRAELEGDMGDHQVGAQARLMSQAMRKLTGS 192

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I++S C+++FINQ+RMKIGVMFGSPETT+GGNALKFYSSVRLDIRR+G+IKD+D I GN 
Sbjct: 193 IAKSGCMVIFINQIRMKIGVMFGSPETTSGGNALKFYSSVRLDIRRIGAIKDRDEIVGNH 252

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQVEFDIMYG+GIS  GELIDLGVK   V+KSG+WFS   +R+GQG
Sbjct: 253 TRVKVVKNKVSPPFKQVEFDIMYGQGISKRGELIDLGVKLGFVEKSGSWFSCGDERIGQG 312

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           REN+K +L++N ++A  IE  +R   GL  D L  E       DA +DD ++V
Sbjct: 313 RENAKTYLKDNPKMAYEIEDKIRAAHGLDFDDLPPE------SDAPEDDINSV 359


>gi|260574638|ref|ZP_05842641.1| recA protein [Rhodobacter sp. SW2]
 gi|259023055|gb|EEW26348.1| recA protein [Rhodobacter sp. SW2]
          Length = 360

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 235/328 (71%), Positives = 281/328 (85%), Gaps = 1/328 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KALE+AL+QI+R +GKG+IM+LG+     + IE  S+GSLGLDIALGIGG PKGRI
Sbjct: 15  MDKAKALESALAQIERQFGKGSIMKLGANSPAMD-IESTSTGSLGLDIALGIGGLPKGRI 73

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YA+KLGV+L  LLISQPDT
Sbjct: 74  IEIYGPESSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLISQPDT 133

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAV ++VIDSVAAL P++EIEGDMG+   G QARLMSQA+RKLT+S
Sbjct: 134 GEQALEIVDTLVRSGAVSLVVIDSVAALVPKSEIEGDMGDMQMGSQARLMSQAMRKLTAS 193

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I RS C++VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIKD+D + G+ 
Sbjct: 194 IGRSNCMVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKDRDEVVGSS 253

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEGIS  GELID+GVKA +V+KSG+W+S+  +R+GQG
Sbjct: 254 TRVKVVKNKVAPPFKQVEFDIMYGEGISKTGELIDIGVKAGVVEKSGSWYSYGDERIGQG 313

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           REN+K+FL++N  +A  IE  +R   GL
Sbjct: 314 RENAKLFLKQNPAVAMEIEDKIRAANGL 341


>gi|3219852|sp|P95469|RECA_PARDE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|1825468|gb|AAB51561.1| recA [Paracoccus denitrificans]
          Length = 356

 Score =  488 bits (1257), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 233/327 (71%), Positives = 281/327 (85%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL++AL+QI+R +GKG+IM+LG+   + E IE  S+GSLGLDIALGIGG PKGRI+
Sbjct: 16  DKQKALDSALAQIERQFGKGSIMKLGADNPVAE-IEATSTGSLGLDIALGIGGLPKGRII 74

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YA+KLGV+L  LLISQPDTG
Sbjct: 75  EIFGPESSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLISQPDTG 134

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LV SGAV ++V+DSVAALTP++EIEGDMG+   G QARLMSQA+RKLT+SI
Sbjct: 135 EQALEIVDTLVASGAVSLVVVDSVAALTPKSEIEGDMGDMQMGSQARLMSQAMRKLTASI 194

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR GSIKD+D +TGN T
Sbjct: 195 GRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRAGSIKDRDEVTGNAT 254

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+QVEFDIMYGEGIS  GELIDLG+KA +V+KSG+W+S+  +R+GQGR
Sbjct: 255 RVKVVKNKVAPPFRQVEFDIMYGEGISKVGELIDLGIKAGVVEKSGSWYSYGDERIGQGR 314

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K FLR++ ++A  IE  +R + GL
Sbjct: 315 ENAKQFLRDHPDMAHAIEDKIRASHGL 341


>gi|330813880|ref|YP_004358119.1| RecA protein [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486975|gb|AEA81380.1| RecA protein [Candidatus Pelagibacter sp. IMCC9063]
          Length = 376

 Score =  488 bits (1256), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 235/347 (67%), Positives = 293/347 (84%), Gaps = 2/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ K+L+AA+SQI   +GKG++M+LG Q  + + IE +S+GSL LDIALGIGG PK RIV
Sbjct: 20  ERQKSLDAAISQIDSNFGKGSVMKLG-QRQVMD-IESISTGSLSLDIALGIGGLPKSRIV 77

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLAL  IA++QK+GGTCAF+DAEHALD  YA+KLGV+  +LLISQPDTG
Sbjct: 78  EIYGPESSGKTTLALQVIAEAQKSGGTCAFIDAEHALDPSYAKKLGVNTTDLLISQPDTG 137

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSGA+ ++V+DSVAALTPRAE+EG+MG+   G+QARLMSQALRKLT SI
Sbjct: 138 EQALEITDTLVRSGAISVLVVDSVAALTPRAELEGEMGDHHMGLQARLMSQALRKLTGSI 197

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S  +++FINQ+RMKIGVMFGSPETT GGNALKFYSSVRLDIRR+G+IKD D I GNQT
Sbjct: 198 SKSNTMVIFINQIRMKIGVMFGSPETTAGGNALKFYSSVRLDIRRIGAIKDGDEIVGNQT 257

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK VEFDIMYG+GIS  GELIDLG KA IV+K+GAW+S+KG+++GQG+
Sbjct: 258 RVKVVKNKVAPPFKVVEFDIMYGKGISKLGELIDLGAKADIVEKAGAWYSYKGEKIGQGK 317

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           ENSK +L  N +I+  IE  +R NAGL++D ++  P+   K + +++
Sbjct: 318 ENSKEYLINNPKISAEIEMAIRANAGLISDKMMGNPSPKEKIETEEN 364


>gi|86138307|ref|ZP_01056881.1| recombinase A [Roseobacter sp. MED193]
 gi|85824832|gb|EAQ45033.1| recombinase A [Roseobacter sp. MED193]
          Length = 354

 Score =  488 bits (1256), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 239/330 (72%), Positives = 283/330 (85%), Gaps = 2/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL++AL+QI+R +GKG+IM++G  G+I E IE  S+GSLGLDIALGIGG P GRI+
Sbjct: 14  DKQKALDSALAQIERQFGKGSIMKMGD-GAIQE-IEASSTGSLGLDIALGIGGLPMGRII 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH  A+ QK GG CAFVDAEHALD  YA KLGVDL  LLISQPDTG
Sbjct: 72  EIYGPESSGKTTLTLHCAAEQQKKGGVCAFVDAEHALDPQYAAKLGVDLDELLISQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSGAV+++++DSVAALTP++E+EGDMG+S  G+QARLMSQA+RKLT SI
Sbjct: 132 EQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSNVGVQARLMSQAMRKLTGSI 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++KD+D I GN T
Sbjct: 192 SRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKDRDEIVGNAT 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGV A +V+KSG+WFS+  +R+GQGR
Sbjct: 252 RVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVAAGVVNKSGSWFSYGDERIGQGR 311

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           EN+K FLR++  IA +IE  +R   GL  D
Sbjct: 312 ENAKQFLRDHQSIAYDIEDKIRAAHGLEFD 341


>gi|121606843|ref|YP_984172.1| recombination protein RecA [Polaromonas naphthalenivorans CJ2]
 gi|254790441|sp|A1VUC3|RECA_POLNA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|120595812|gb|ABM39251.1| recA protein [Polaromonas naphthalenivorans CJ2]
          Length = 384

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 227/327 (69%), Positives = 286/327 (87%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K++AL  AL+QI++ +GKG IM+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 14  EKARALAVALAQIEKQFGKGTIMKLGA-GEVIEDIQVVSTGSLGLDIALGVGGLPRGRVV 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGTCAFVDAEHALD  YA+KLGV+L+ LLISQPDTG
Sbjct: 73  EIYGPESSGKTTLTLQVIAEMQKIGGTCAFVDAEHALDIQYAQKLGVNLQELLISQPDTG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IVIDSVAALTP+AE+EG+MG+SLPG+QARLMSQALRKLT++I
Sbjct: 133 EQALEIVDSLTRSGAVDLIVIDSVAALTPKAELEGEMGDSLPGLQARLMSQALRKLTATI 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 193 KKANCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGDEVIGNET 252

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+ASPFK  EFDI+YGEGIS  GE++DLGV   +V+K+GAW++++G+++GQGR
Sbjct: 253 RVKVVKNKVASPFKMAEFDILYGEGISRLGEVLDLGVANHVVEKAGAWYAYRGEKIGQGR 312

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           +NS+ FL+EN  +A  IE+ +R+  G+
Sbjct: 313 DNSREFLKENPALAIEIENKVREALGI 339


>gi|312797180|ref|YP_004030102.1| RecA protein [Burkholderia rhizoxinica HKI 454]
 gi|312168955|emb|CBW75958.1| RecA protein [Burkholderia rhizoxinica HKI 454]
          Length = 376

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 229/329 (69%), Positives = 286/329 (86%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AALSQI++ +GKG+IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 36  EKSKALAAALSQIEKQFGKGSIMRLG-HGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 94

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGTCAF+DAEHALD  YA KLGV+   LLISQPDTG
Sbjct: 95  EIYGPESSGKTTLTLQVIAEMQKIGGTCAFIDAEHALDVQYASKLGVNASELLISQPDTG 154

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 155 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 214

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 215 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 274

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IV+K+GAW+S+ G+++GQG+
Sbjct: 275 RVKVVKNKVSPPFREAIFDILYGEGISRHGEIIDLGVQAKIVEKAGAWYSYNGEKIGQGK 334

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN ++A  IE+ +R++ G+VA
Sbjct: 335 DNAREFLRENPDLAREIENRVRESLGVVA 363


>gi|126726569|ref|ZP_01742410.1| recombinase A [Rhodobacterales bacterium HTCC2150]
 gi|126704432|gb|EBA03524.1| recombinase A [Rhodobacterales bacterium HTCC2150]
          Length = 358

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 231/327 (70%), Positives = 283/327 (86%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL++ALSQI+R +GKG+IM+LG  G+  E I   S+GSLGLDIALGIGG PKGR++
Sbjct: 15  NKLKALDSALSQIERQFGKGSIMKLGQDGATQE-ISATSTGSLGLDIALGIGGLPKGRVI 73

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH+IA+ QK GG CAFVDAEHALD +YA+KLGV+L  LLISQPDTG
Sbjct: 74  EIYGPESSGKTTLTLHSIAEEQKLGGVCAFVDAEHALDPLYAKKLGVNLDELLISQPDTG 133

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ LVRSGAV+++V+DSVAALTP+AE+EGDMG+   G QARLMSQA+RKLT +I
Sbjct: 134 EQALEITETLVRSGAVNMVVVDSVAALTPKAELEGDMGDRQVGAQARLMSQAMRKLTGAI 193

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++S C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIKD+D + GN T
Sbjct: 194 NKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIKDRDEVVGNTT 253

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDI+YGEGIS  GE+IDLGV A +++KSG+W+S+  +R+GQGR
Sbjct: 254 RVKVVKNKVAPPFKQVEFDIIYGEGISKMGEIIDLGVAAGLIEKSGSWYSYGDERIGQGR 313

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN K FL+EN ++A  +E  +R + GL
Sbjct: 314 ENVKKFLKENDKVALELEDKIRASHGL 340


>gi|296114920|ref|ZP_06833567.1| protein recA (recombinase A) [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978521|gb|EFG85252.1| protein recA (recombinase A) [Gluconacetobacter hansenii ATCC
           23769]
          Length = 359

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 246/346 (71%), Positives = 297/346 (85%), Gaps = 6/346 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK KALE ALSQI+R +GKG+IM++G +      ++V+S+GSLGLDI LGIGG P+GRI
Sbjct: 20  IDKGKALEGALSQIERAFGKGSIMRMGERPKTE--VDVISTGSLGLDIGLGIGGLPRGRI 77

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH IA++QK GGTCAF+DAEHALD  YARKLGVD+ +LLISQPD 
Sbjct: 78  VEIYGPESSGKTTMALHAIAEAQKKGGTCAFIDAEHALDPGYARKLGVDVDSLLISQPDA 137

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++VIDSVAAL PRAE+EG+MG+S  G+ ARLMSQALRKLT S
Sbjct: 138 GEQALEIADTLVRSGAIDVLVIDSVAALVPRAELEGEMGDSHVGLHARLMSQALRKLTGS 197

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +SRS  +++F+NQ+R+KIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDKD + GNQ
Sbjct: 198 VSRSNTMMIFLNQIRLKIGVMFGSPETTTGGNALKFYASVRMDIRRIGSIKDKDEVVGNQ 257

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PF+QVEFDIMYGEGIS  GELIDLGVKA IV+KSGAWFS   QR+GQG
Sbjct: 258 TRVKVVKNKMAPPFRQVEFDIMYGEGISKMGELIDLGVKAGIVEKSGAWFSCDSQRIGQG 317

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           REN+K FLR++ E+A +IE  +R+ AG+VA+++L  P     DDA+
Sbjct: 318 RENAKQFLRDHPEMAADIERRVREQAGVVAEAMLVGP----DDDAE 359


>gi|67906614|gb|AAY82716.1| predicted recombination protein RecA [uncultured bacterium]
          Length = 370

 Score =  485 bits (1248), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 231/357 (64%), Positives = 297/357 (83%), Gaps = 2/357 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K++   +K+KAL+AA+SQI   +GKG++M+LG + ++   IE + +GSL LD+ALGIGGF
Sbjct: 15  KDLENKEKNKALDAAISQITDNFGKGSVMKLGQKKAM--DIESIFTGSLSLDLALGIGGF 72

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRIVEIYGPESSGKTTLAL  +A++QK+GG CAFVDAEHALD +YA+KLGV+ + LLI
Sbjct: 73  PKGRIVEIYGPESSGKTTLALQVVAEAQKSGGICAFVDAEHALDPVYAKKLGVNTEELLI 132

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI D LV+SG++ +IVIDSVAALTPRAEIEGDMG+   G+Q+RLMSQALR
Sbjct: 133 SQPDAGEQALEIADTLVKSGSISVIVIDSVAALTPRAEIEGDMGDHHVGLQSRLMSQALR 192

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLTSSIS +  +++FINQ+RMKIGVMFGSPETT+GGNALKFYSSVR+DIRR+G+IKDKD+
Sbjct: 193 KLTSSISNTNTMMIFINQIRMKIGVMFGSPETTSGGNALKFYSSVRMDIRRIGAIKDKDA 252

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           I GN TRVKVVKNK++ PFK VEFD+MYG+GIS  GELIDLG KA IV+KSGAW+++KG+
Sbjct: 253 IIGNSTRVKVVKNKVSPPFKVVEFDLMYGKGISKVGELIDLGAKAEIVEKSGAWYAYKGE 312

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           ++GQGREN+KI+L +N ++A  IE  +R+ AG++   +   P    K+ ++    D+
Sbjct: 313 KIGQGRENAKIYLEQNPKVAAEIEMAIREKAGVITKKIEGNPLDQEKNRSEPKRRDS 369


>gi|197104451|ref|YP_002129828.1| recombinase A protein [Phenylobacterium zucineum HLK1]
 gi|196477871|gb|ACG77399.1| recombinase A protein [Phenylobacterium zucineum HLK1]
          Length = 361

 Score =  485 bits (1248), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 243/345 (70%), Positives = 295/345 (85%), Gaps = 1/345 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +ALEAAL+QI R +GKG++M+LG +G I E IE VS+GSLGLD+ALGIGG PKGRIV
Sbjct: 15  EKQRALEAALAQIDRAFGKGSVMKLGDKGKIVE-IESVSTGSLGLDMALGIGGLPKGRIV 73

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH +A+ QK GGT AFVDAEHALD  YA KLGV+L +LL++QPDTG
Sbjct: 74  EIYGPESSGKTTLALHVVAEVQKAGGTAAFVDAEHALDPSYAHKLGVNLDDLLVAQPDTG 133

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRS AVD+IV+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SI
Sbjct: 134 EQALEITDTLVRSNAVDVIVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASI 193

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++K +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR GS+K +D I GN  
Sbjct: 194 SKAKTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRTGSVKQRDEIVGNNV 253

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++VEFDIMYGEGIS  GE+IDLGVKA +V+K+G+WFSF  QR+GQGR
Sbjct: 254 RVKVVKNKVAPPFREVEFDIMYGEGISKLGEIIDLGVKAGVVEKAGSWFSFNSQRIGQGR 313

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           +N + FL++N +IAE IE+ +R     + + LL  P+    D+AD
Sbjct: 314 DNVREFLKQNPDIAEQIEAKVRGAKSAIEEELLVGPSEGEGDEAD 358


>gi|254489873|ref|ZP_05103068.1| protein RecA [Methylophaga thiooxidans DMS010]
 gi|224464958|gb|EEF81212.1| protein RecA [Methylophaga thiooxydans DMS010]
          Length = 347

 Score =  485 bits (1248), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 230/323 (71%), Positives = 281/323 (86%), Gaps = 1/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKGA+M++G  G+  + I  VS+GS+GLD+ALGIGG P+GR++
Sbjct: 4   NKKKALGAALGQIEKQFGKGAVMRMGDAGAARD-IAAVSTGSIGLDVALGIGGLPRGRVI 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GGT AFVDAEHALD +YA KLGVD+ +LL+SQPDTG
Sbjct: 63  EIYGPESSGKTTLTLHAIAEMQKMGGTAAFVDAEHALDPVYAEKLGVDIDDLLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSGAVDI+V+DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT++I
Sbjct: 123 EQALEITDMLVRSGAVDIVVVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK  D I GN+T
Sbjct: 183 KRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKKGDEILGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDI+YGEGIS  GELIDLGV  ++V+KSGAW+S+ G R+GQG+
Sbjct: 243 RVKVVKNKVAPPFKQVEFDILYGEGISREGELIDLGVSQNLVEKSGAWYSYNGTRIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           +N + FLREN E+A  IE+ +R+
Sbjct: 303 DNVRAFLRENTEMAAEIEAKIRE 325


>gi|315499501|ref|YP_004088304.1| reca protein [Asticcacaulis excentricus CB 48]
 gi|315417513|gb|ADU14153.1| recA protein [Asticcacaulis excentricus CB 48]
          Length = 356

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 236/336 (70%), Positives = 293/336 (87%), Gaps = 1/336 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +ALE+AL+QI R +GKG++M+LG+ G + E +E +S+GSLGLD+ALGIGG PKGR++
Sbjct: 15  EKQRALESALAQIDRAFGKGSVMKLGNAGKVVE-VESISTGSLGLDMALGIGGLPKGRVI 73

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALHT+A+ QK GGT AFVDAEHALD +YA KLGV+L +LL+SQPD G
Sbjct: 74  EIYGPESSGKTTLALHTVAEIQKAGGTAAFVDAEHALDPVYAHKLGVNLDDLLVSQPDNG 133

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSGAVDI+V+DSVAALTP+AEIEGDMG+SLPG+QARLMSQALRKLT+SI
Sbjct: 134 EQALEITDTLVRSGAVDIVVVDSVAALTPKAEIEGDMGDSLPGLQARLMSQALRKLTASI 193

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+SKCI++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIR +G IK +D I GN  
Sbjct: 194 SKSKCIVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRSIGKIKVRDEIVGNNV 253

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++VEFDI+YGEGIS  GE++DLGVK  +V+K+G+WFSF   R+GQGR
Sbjct: 254 RVKVVKNKVAPPFREVEFDILYGEGISKLGEVLDLGVKGGVVEKAGSWFSFNSIRIGQGR 313

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           EN++ FL+ N EIA  IE+L+R+ +  +++ LL  P
Sbjct: 314 ENARDFLKSNPEIAAEIEALVRKKSDAISEELLGTP 349


>gi|254456368|ref|ZP_05069797.1| protein RecA [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083370|gb|EDZ60796.1| protein RecA [Candidatus Pelagibacter sp. HTCC7211]
          Length = 382

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 230/359 (64%), Positives = 296/359 (82%), Gaps = 7/359 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           +EM+I +K+KAL+AA++QI   +GKG++M+LG + ++   IE VS+GSL LD+ALGIGG 
Sbjct: 15  QEMDIKEKNKALDAAIAQITDNFGKGSVMKLGQKRAM--DIESVSTGSLSLDLALGIGGL 72

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRIVE+YGPESSGKTTLAL  +A++QK GG CAFVDAEHALD +YA+KLGV+ + LLI
Sbjct: 73  PKGRIVEVYGPESSGKTTLALQVVAEAQKAGGICAFVDAEHALDPVYAKKLGVNTEELLI 132

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI D LV+SG++ +IVIDSVAALTP+AEIEG+MG+   G+Q+RLMSQALR
Sbjct: 133 SQPDAGEQALEIADTLVKSGSISVIVIDSVAALTPKAEIEGEMGDHHVGLQSRLMSQALR 192

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLTSSIS +  +++FINQ+RMKIGVMFGSPETT+GGNALKFYSSVR+DIRR+G+IKDKD 
Sbjct: 193 KLTSSISNTNTMMIFINQIRMKIGVMFGSPETTSGGNALKFYSSVRMDIRRIGAIKDKDE 252

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           I GN TRVKVVKNK+A PFK VEFD+MYG+GIS  GEL+DLG KA I++KSGAW+++KG+
Sbjct: 253 IIGNSTRVKVVKNKVAPPFKVVEFDLMYGKGISKMGELVDLGSKADIIEKSGAWYAYKGE 312

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           ++GQGREN+K +L +N ++A  IE  +R+ AG++   +   P      D +K   D +E
Sbjct: 313 KIGQGRENAKTYLAQNPKVAAEIELAIREKAGVIQKKIEGNPL-----DPEKAAKDQIE 366


>gi|311350401|gb|ADP92399.1| recombinase [Burkholderia stabilis]
          Length = 338

 Score =  482 bits (1240), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 229/327 (70%), Positives = 285/327 (87%), Gaps = 1/327 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEI
Sbjct: 1   SKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R
Sbjct: 120 ALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKR 179

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRV
Sbjct: 180 TNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRV 239

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N
Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299

Query: 313 SKIFLRENIEIAENIESLLRQNAGLVA 339
           ++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 AREFLRENPEIAREIENRIRESLGVVA 326


>gi|209967935|gb|ACB38233.2| RecA [Burkholderia cepacia]
          Length = 338

 Score =  482 bits (1240), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 229/326 (70%), Positives = 284/326 (87%), Gaps = 1/326 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEI
Sbjct: 1   SKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R
Sbjct: 120 ALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKR 179

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           + C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRV
Sbjct: 180 TNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N
Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299

Query: 313 SKIFLRENIEIAENIESLLRQNAGLV 338
           ++ FLREN EIA  IE+ +R++ G+V
Sbjct: 300 AREFLRENPEIAREIENRIRESLGVV 325


>gi|272894040|gb|ACZ96546.1| RecA [Burkholderia contaminans]
          Length = 343

 Score =  482 bits (1240), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 229/326 (70%), Positives = 284/326 (87%), Gaps = 1/326 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEI
Sbjct: 1   SKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R
Sbjct: 120 ALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKR 179

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           + C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRV
Sbjct: 180 TNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N
Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299

Query: 313 SKIFLRENIEIAENIESLLRQNAGLV 338
           ++ FLREN EIA  IE+ +R++ G+V
Sbjct: 300 AREFLRENPEIAREIENRIRESLGVV 325


>gi|160858118|emb|CAP18006.1| DNA recombinase [Burkholderia contaminans]
 gi|160858120|emb|CAP18007.1| DNA recombinase [Burkholderia contaminans]
          Length = 338

 Score =  481 bits (1239), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 229/326 (70%), Positives = 284/326 (87%), Gaps = 1/326 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEI
Sbjct: 1   SKALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R
Sbjct: 120 ALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKR 179

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           + C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRV
Sbjct: 180 TNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N
Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299

Query: 313 SKIFLRENIEIAENIESLLRQNAGLV 338
           ++ FLREN EIA  IE+ +R++ G+V
Sbjct: 300 AREFLRENPEIAREIENRIRESLGVV 325


>gi|209967941|gb|ACB12745.2| RecA [Burkholderia cepacia]
          Length = 338

 Score =  481 bits (1238), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 228/326 (69%), Positives = 284/326 (87%), Gaps = 1/326 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEI
Sbjct: 1   SKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPES+GKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQ
Sbjct: 60  YGPESTGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R
Sbjct: 120 ALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKR 179

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           + C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRV
Sbjct: 180 TNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N
Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299

Query: 313 SKIFLRENIEIAENIESLLRQNAGLV 338
           ++ FLREN EIA  IE+ +R++ G+V
Sbjct: 300 AREFLRENPEIAREIENRIRESLGVV 325


>gi|198283178|ref|YP_002219499.1| recA protein [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665991|ref|YP_002425407.1| recA protein [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|226723623|sp|B5EQ47|RECA_ACIF5 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226737749|sp|B7J7A9|RECA_ACIF2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|198247699|gb|ACH83292.1| recA protein [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518204|gb|ACK78790.1| recA protein [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 345

 Score =  481 bits (1238), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 229/324 (70%), Positives = 278/324 (85%), Gaps = 1/324 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +SKAL AALSQI + +GKGA+M+LG   +I + IEV S+GSLGLD+ALG+GG P+GR+VE
Sbjct: 5   RSKALSAALSQIDKQFGKGAVMRLGDHNAI-KDIEVYSTGSLGLDLALGVGGLPRGRVVE 63

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA  Q  GGT AF+DAEHALD  YA KLGVDL+NLLISQPDTGE
Sbjct: 64  IYGPESSGKTTLTLHAIASCQAAGGTAAFIDAEHALDPGYAHKLGVDLENLLISQPDTGE 123

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DMLVRSGAVD+IVIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT++IS
Sbjct: 124 QALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTANIS 183

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           R+  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK  D + GN TR
Sbjct: 184 RTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKKSDEVVGNDTR 243

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF++ EF I YGEGIS   EL+DLGVK  IV+KSGAW+S++G+R+GQG++
Sbjct: 244 VKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVKFDIVEKSGAWYSYQGERIGQGKD 303

Query: 312 NSKIFLRENIEIAENIESLLRQNA 335
           N++ +L+E+ E+A NIE  +R  A
Sbjct: 304 NARQYLKEHPELAANIEQRIRAAA 327


>gi|90416732|ref|ZP_01224662.1| recombinase A [marine gamma proteobacterium HTCC2207]
 gi|90331485|gb|EAS46721.1| recombinase A [marine gamma proteobacterium HTCC2207]
          Length = 340

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 224/323 (69%), Positives = 275/323 (85%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKALEAAL QI+R +GKG +M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKSKALEAALGQIERQFGKGTVMRMGE--GTRQAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK GGTCAF+DAEHALD +YA KLGV + +L++SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAEAQKAGGTCAFIDAEHALDPVYAEKLGVSVDDLIVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALE+TDMLVRSGA D++V+DSVAALTPRAEIEGDMG+   G+QARLMSQALRKLT +I
Sbjct: 122 EQALEVTDMLVRSGACDVLVVDSVAALTPRAEIEGDMGDHHVGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G++KD D I GN+T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAVKDGDEIVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF I+YG GI+  GEL+DLGVK  ++DKSGAW+++KG ++GQG+
Sbjct: 242 RVKVVKNKVAPPFKQTEFQILYGRGINRNGELVDLGVKNGLIDKSGAWYAYKGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N  I+L EN EIA  IE+++R+
Sbjct: 302 ANVGIYLTENPEIAAEIEAMIRE 324


>gi|25991655|gb|AAN76868.1| RecA [Burkholderia ambifaria]
 gi|25991657|gb|AAN76869.1| RecA [Burkholderia cepacia]
 gi|25991659|gb|AAN76870.1| RecA [Burkholderia ambifaria]
 gi|25991663|gb|AAN76872.1| RecA [Burkholderia ambifaria]
 gi|54633824|gb|AAV36022.1| RecA [Burkholderia sp. KBC-6]
 gi|54633826|gb|AAV36023.1| RecA [Burkholderia sp. KBC-7]
          Length = 336

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 230/340 (67%), Positives = 289/340 (85%), Gaps = 4/340 (1%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
            FLREN EIA  IE+ +R++ G+V    + E A    D+A
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVT---MPEGAAAVHDEA 336


>gi|25991665|gb|AAN76873.1| RecA [Burkholderia cepacia]
 gi|25991671|gb|AAN76876.1| RecA [Burkholderia cepacia]
 gi|25991687|gb|AAN76884.1| RecA [Burkholderia cepacia]
 gi|25991769|gb|AAN76925.1| RecA [Burkholderia cepacia]
          Length = 334

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 228/325 (70%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|66275520|gb|AAY44023.1| RecA [Burkholderia vietnamiensis]
 gi|70904905|gb|AAZ14030.1| RecA [Burkholderia vietnamiensis]
          Length = 328

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 228/325 (70%), Positives = 284/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|25991739|gb|AAN76910.1| RecA [Burkholderia cepacia]
          Length = 333

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/325 (69%), Positives = 284/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|25991703|gb|AAN76892.1| RecA [Burkholderia vietnamiensis]
 gi|25991705|gb|AAN76893.1| RecA [Burkholderia vietnamiensis]
          Length = 333

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 228/325 (70%), Positives = 284/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|25991731|gb|AAN76906.1| RecA [Burkholderia cepacia]
          Length = 333

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/325 (69%), Positives = 284/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|70904847|gb|AAZ14003.1| RecA [Burkholderia cepacia]
          Length = 326

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 228/325 (70%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|25991683|gb|AAN76882.1| RecA [Burkholderia cepacia]
          Length = 334

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 228/325 (70%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|25991681|gb|AAN76881.1| RecA [Burkholderia cepacia]
          Length = 334

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 228/325 (70%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALPAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|25991667|gb|AAN76874.1| RecA [Burkholderia cepacia]
          Length = 334

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 228/325 (70%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|54633822|gb|AAV36021.1| RecA [Burkholderia sp. KBC-5]
          Length = 336

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 230/340 (67%), Positives = 289/340 (85%), Gaps = 4/340 (1%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
            FLREN EIA  IE+ +R++ G+V    + E A    D+A
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVT---MPEGAAAVYDEA 336


>gi|224551681|gb|ACN54240.1| RecA [Burkholderia sp. LWAT21]
          Length = 325

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 228/325 (70%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|319431773|gb|ADP92383.2| recombinase [Burkholderia multivorans]
          Length = 333

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 228/326 (69%), Positives = 284/326 (87%), Gaps = 1/326 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIY
Sbjct: 1   KALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQA
Sbjct: 60  GPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+
Sbjct: 120 LEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRT 179

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVK
Sbjct: 180 NCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVK 239

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N+
Sbjct: 240 VVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNA 299

Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339
           + FLREN EIA  IE+ +R++ G+ A
Sbjct: 300 REFLRENPEIAREIENRIRESLGVAA 325


>gi|224551679|gb|ACN54239.1| RecA [Burkholderia sp. LWAT18]
          Length = 334

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 228/325 (70%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|70904853|gb|AAZ14006.1| RecA [Burkholderia cepacia]
          Length = 326

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 228/325 (70%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GDATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|25991751|gb|AAN76916.1| RecA [Burkholderia cenocepacia]
          Length = 333

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 228/325 (70%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|25991661|gb|AAN76871.1| RecA [Burkholderia ambifaria]
          Length = 336

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 229/340 (67%), Positives = 289/340 (85%), Gaps = 4/340 (1%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA K+GV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKVGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
            FLREN EIA  IE+ +R++ G+V    + E A    D+A
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVT---MPEGAAAVHDEA 336


>gi|163746279|ref|ZP_02153637.1| recombinase A [Oceanibulbus indolifex HEL-45]
 gi|161380164|gb|EDQ04575.1| recombinase A [Oceanibulbus indolifex HEL-45]
          Length = 356

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 241/355 (67%), Positives = 296/355 (83%), Gaps = 11/355 (3%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD +K     +K KAL++AL+QI+R +GKG+IM+LG++G++ + I   S+GSLGLDIALG
Sbjct: 9   MDSKK---TAEKQKALDSALAQIERQFGKGSIMKLGAEGAV-QDIRASSTGSLGLDIALG 64

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG P GRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YA+KLGVD+ 
Sbjct: 65  IGGLPMGRIIEIYGPESSGKTTLTLHCVAEQQKAGGVCAFVDAEHALDPQYAKKLGVDID 124

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LLISQPDTGEQALEITD LVRSGAV+++++DSVAALTP++E+EG+MG+S  G+QARLMS
Sbjct: 125 ELLISQPDTGEQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGEMGDSSVGVQARLMS 184

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKLT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++K
Sbjct: 185 QAMRKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGALK 244

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D+D + GN T+VKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGVKA +VDKSG+WFS
Sbjct: 245 DRDEVVGNATKVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVKAGVVDKSGSWFS 304

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           +  +R+GQGREN+K FL+EN  +A  IE  +R   GL       + A   +DDAD
Sbjct: 305 YGDERIGQGRENAKNFLKENTAMAAEIEDKIRAAHGL-------DSAGPGRDDAD 352


>gi|25229187|gb|AAN74663.1| RecA [Burkholderia pyrrocinia]
          Length = 333

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/325 (69%), Positives = 284/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|25991721|gb|AAN76901.1| RecA [Burkholderia cenocepacia]
          Length = 333

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 228/325 (70%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+V+
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVS 324


>gi|91762224|ref|ZP_01264189.1| recA protein [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718026|gb|EAS84676.1| recA protein [Candidatus Pelagibacter ubique HTCC1002]
          Length = 383

 Score =  479 bits (1232), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/365 (62%), Positives = 295/365 (80%), Gaps = 16/365 (4%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K+KAL+AA+SQI   +GKG++M+LG + ++   +E +S+GSL LD+ALGIGG PKGR++
Sbjct: 21  EKNKALDAAMSQIIDNFGKGSVMKLGQRRAM--DVESISTGSLSLDVALGIGGLPKGRVI 78

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTLAL  +A++QK GG CAF+DAEHALD IYA+KLGVD + LLISQPDTG
Sbjct: 79  EVYGPESSGKTTLALQVLAEAQKAGGICAFIDAEHALDPIYAKKLGVDTEELLISQPDTG 138

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LV+SG++ +IVIDSVAALTPRAEIEG+MG+   G+Q+RLMSQALRKLT SI
Sbjct: 139 EQALEIADTLVKSGSISVIVIDSVAALTPRAEIEGEMGDHHVGLQSRLMSQALRKLTGSI 198

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S +  +++FINQ+RMKIGVMFGSPETT+GGNALKFYSSVR+DIRR+G+IK+ D I GN T
Sbjct: 199 SSTNTMMIFINQIRMKIGVMFGSPETTSGGNALKFYSSVRMDIRRIGAIKNGDEIIGNST 258

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK VEFD+MYG+GIS  GEL+DLG KA IV+K+GAW+++KG+++GQGR
Sbjct: 259 RVKVVKNKVAPPFKVVEFDLMYGKGISKVGELVDLGAKADIVEKAGAWYAYKGEKIGQGR 318

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL--------------LQEPAINTKDDADK 356
           EN+KI+L +N +IA  IE  +R+ AG++A  +              ++EP + TK++   
Sbjct: 319 ENAKIYLEQNPQIAAEIEMAIREKAGVIAKKIEGNPLDPEKAAKDQIEEPKLETKEEVTP 378

Query: 357 DDTDN 361
               N
Sbjct: 379 PSKKN 383


>gi|25991713|gb|AAN76897.1| RecA [Burkholderia cepacia]
 gi|25991737|gb|AAN76909.1| RecA [Burkholderia cepacia]
 gi|25991759|gb|AAN76920.1| RecA [Burkholderia cepacia]
          Length = 333

 Score =  479 bits (1232), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 228/325 (70%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|25991757|gb|AAN76919.1| RecA [Burkholderia cenocepacia]
          Length = 333

 Score =  479 bits (1232), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+V+
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVS 324


>gi|150171054|emb|CAO01510.1| DNA recombination protein [Burkholderia seminalis]
          Length = 338

 Score =  479 bits (1232), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/327 (69%), Positives = 284/327 (86%), Gaps = 1/327 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEI
Sbjct: 1   SKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R
Sbjct: 120 ALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKR 179

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRV
Sbjct: 180 TNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRV 239

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N
Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299

Query: 313 SKIFLRENIEIAENIESLLRQNAGLVA 339
           ++ FLREN EIA  IE+ +R++ G+ +
Sbjct: 300 AREFLRENPEIAREIENRIRESLGVAS 326


>gi|25991693|gb|AAN76887.1| RecA [Burkholderia cenocepacia]
 gi|25991697|gb|AAN76889.1| RecA [Burkholderia cenocepacia]
 gi|25991699|gb|AAN76890.1| RecA [Burkholderia cenocepacia]
 gi|25991741|gb|AAN76911.1| RecA [Burkholderia cenocepacia]
          Length = 333

 Score =  479 bits (1232), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+V+
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVS 324


>gi|329849340|ref|ZP_08264186.1| protein RecA [Asticcacaulis biprosthecum C19]
 gi|328841251|gb|EGF90821.1| protein RecA [Asticcacaulis biprosthecum C19]
          Length = 360

 Score =  479 bits (1232), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 238/345 (68%), Positives = 290/345 (84%), Gaps = 1/345 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  +K +ALEAAL+QI R +GKG++M+LG  G I E +E +S+GSLGLDIALGIGG PKG
Sbjct: 12  NESEKQRALEAALAQIDRAFGKGSVMRLGVGGKIAE-VESISTGSLGLDIALGIGGLPKG 70

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R++EIYGPESSGKTTLALHT+A+ QK GGT AFVDAEHALD  YA KLGV+L+ LL+SQP
Sbjct: 71  RVIEIYGPESSGKTTLALHTVAEIQKAGGTAAFVDAEHALDPTYAGKLGVNLEELLVSQP 130

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEITD LVRSGAVDI+V+DSVAALTPRAEIEGDMG+SLPG+QARLMSQALRKLT
Sbjct: 131 DNGEQALEITDTLVRSGAVDIVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLT 190

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            SIS+SKCI++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIR +G IK +D I G
Sbjct: 191 GSISKSKCIVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRSIGKIKVRDEIIG 250

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N  +VKVVKNK+A PF++VEFDI+YG+GIS  GE+ID+GVKASI++K+G+WFS+   R+G
Sbjct: 251 NNVKVKVVKNKVAPPFREVEFDILYGQGISKLGEIIDMGVKASIIEKAGSWFSYNSTRIG 310

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           QGREN++ FL+ N E+   IE  +R     +++ LL  P  +  D
Sbjct: 311 QGRENARDFLKANPEMTAEIEKAIRNKTDKLSEELLGTPEPDAND 355


>gi|145590013|ref|YP_001156610.1| recA protein [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145048419|gb|ABP35046.1| RecA protein [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 363

 Score =  479 bits (1232), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 228/327 (69%), Positives = 280/327 (85%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL AAL+QI++ +GKG+IM+LG    I + I+VVSSGSLGLDIALG+GG  +GR++
Sbjct: 20  DKQKALTAALAQIEKQFGKGSIMRLG-DAEISQDIQVVSSGSLGLDIALGVGGLARGRVI 78

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GGTCAF+DAEHALD  YA +LGVD+ NLLISQPDTG
Sbjct: 79  EIYGPESSGKTTLTLHAIAEMQKLGGTCAFIDAEHALDVQYASRLGVDVNNLLISQPDTG 138

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL PRAEIEGDMG+SLPG+QARLMSQALRKLT +I
Sbjct: 139 EQALEIADALVRSGSIDLIVIDSVAALVPRAEIEGDMGDSLPGLQARLMSQALRKLTGAI 198

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+   ++FINQ+RMKIGVMFGSPETTTGGNALKFY+S+RLDIRR+GSIK  D + GN+T
Sbjct: 199 KRTNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASMRLDIRRIGSIKKGDEVVGNET 258

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDIMYG GIS  GE+ID+GV+A IVDKSG+W+S+ G R+GQG+
Sbjct: 259 RVKVVKNKVSPPFREAIFDIMYGAGISREGEIIDMGVEADIVDKSGSWYSYNGDRIGQGK 318

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           +N + FL+EN  IA++IE+ +R+  G+
Sbjct: 319 DNVREFLKENPAIAKDIEAKIREKLGV 345


>gi|119713373|gb|ABL97436.1| recA DNA recombination protein [uncultured marine bacterium
           EB80_69G07]
          Length = 382

 Score =  479 bits (1232), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 223/342 (65%), Positives = 289/342 (84%), Gaps = 2/342 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           +E++I +K+KAL+AA+SQI   +GKG++M+LG + ++   IE +S+GSL LD+ALGIGG 
Sbjct: 15  QELDIKEKNKALDAAISQITDNFGKGSVMKLGEKRAM--DIESISTGSLSLDLALGIGGL 72

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+E+YGPESSGKTTLAL  +A++QK GG CAFVDAEHALD +YA+KLGV+ + LLI
Sbjct: 73  PKGRIIEVYGPESSGKTTLALQVVAEAQKAGGICAFVDAEHALDPVYAKKLGVNTEELLI 132

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI D LV+SG++ +IVIDSVAALTP+AEIEG+MG+   G+Q+RLMSQALR
Sbjct: 133 SQPDAGEQALEIADTLVKSGSISVIVIDSVAALTPKAEIEGEMGDHHVGLQSRLMSQALR 192

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT SIS +  +++FINQ+RMKIGVMFGSPETT+GGNALKFYSSVR+DIRR+G+IKDKD 
Sbjct: 193 KLTGSISNTNTMMIFINQIRMKIGVMFGSPETTSGGNALKFYSSVRMDIRRIGAIKDKDE 252

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           I GN TRVKVVKNK+A PFK VEFD+MYG GIS  GEL+DLG KA I++KSGAW+++KG+
Sbjct: 253 IIGNTTRVKVVKNKVAPPFKVVEFDLMYGRGISKMGELVDLGAKADIIEKSGAWYAYKGE 312

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           ++GQGREN+K +L +N ++A  IE  +R+ AG+++  +   P
Sbjct: 313 KIGQGRENAKTYLAQNPKVAAEIEMAIREKAGVISKKIEGNP 354


>gi|25991727|gb|AAN76904.1| RecA [Burkholderia cenocepacia]
          Length = 333

 Score =  478 bits (1231), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/324 (70%), Positives = 282/324 (87%), Gaps = 1/324 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLV 338
            FLREN EIA  IE+ +R++ G+V
Sbjct: 300 EFLRENPEIAREIENRIRESLGVV 323


>gi|70904894|gb|AAZ14025.1| RecA [Burkholderia cenocepacia]
          Length = 332

 Score =  478 bits (1231), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+V+
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVS 324


>gi|54633814|gb|AAV36017.1| RecA [Burkholderia sp. KBC-1]
          Length = 328

 Score =  478 bits (1231), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 226/324 (69%), Positives = 283/324 (87%), Gaps = 1/324 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLV 338
            FLREN EIA  IE+ +R++ G+V
Sbjct: 300 EFLRENPEIAREIENRIRESLGVV 323


>gi|119468993|ref|ZP_01612018.1| RecA protein (Recombinase A) [Alteromonadales bacterium TW-7]
 gi|119447645|gb|EAW28912.1| RecA protein (Recombinase A) [Alteromonadales bacterium TW-7]
          Length = 347

 Score =  478 bits (1231), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 236/352 (67%), Positives = 286/352 (81%), Gaps = 11/352 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AALSQI+R +GKG+IM+LG   ++   I+ VS+GSLG+DIALGIGG P GRIV
Sbjct: 4   NKQKALDAALSQIERQFGKGSIMKLGDNKAL--NIDAVSTGSLGIDIALGIGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD +YA+KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTLTLQVIAQAQKEGKTCAFVDAEHALDPVYAQKLGVNIDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS AVD++++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT +I
Sbjct: 122 EQALEICDMLVRSSAVDVVIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIRR+GS+K+ D + GN+T
Sbjct: 182 KRSNTLCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRIDIRRIGSVKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFKQ EF IMYGEGIS  GELIDLGVK  IV+K+GAW+S+ G ++GQG+
Sbjct: 242 RVKIVKNKVAPPFKQAEFIIMYGEGISKQGELIDLGVKHKIVEKAGAWYSYNGNKVGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD--KDDTD 360
            NS  FL+EN+EIA  IE  LR       D LL +  I  +D  D   DD D
Sbjct: 302 NNSIKFLKENVEIANEIEGKLR-------DMLLLKATIEPEDGEDVLGDDAD 346


>gi|242133652|gb|ACS87937.1| RecA [Burkholderia cepacia]
 gi|242133654|gb|ACS87938.1| RecA [Burkholderia cepacia]
          Length = 333

 Score =  478 bits (1231), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|25991729|gb|AAN76905.1| RecA [Burkholderia cenocepacia]
          Length = 333

 Score =  478 bits (1231), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+V+
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVS 324


>gi|25991685|gb|AAN76883.1| RecA [Burkholderia cepacia]
          Length = 334

 Score =  478 bits (1231), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/324 (70%), Positives = 282/324 (87%), Gaps = 1/324 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALPAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLV 338
            FLREN EIA  IE+ +R++ G+V
Sbjct: 300 EFLRENPEIAREIENRIRESLGVV 323


>gi|25991669|gb|AAN76875.1| RecA [Burkholderia cepacia]
          Length = 334

 Score =  478 bits (1231), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/324 (70%), Positives = 282/324 (87%), Gaps = 1/324 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLV 338
            FLREN EIA  IE+ +R++ G+V
Sbjct: 300 EFLRENPEIAREIENRIRESLGVV 323


>gi|25229197|gb|AAN74668.1| RecA [Burkholderia cepacia]
 gi|25229199|gb|AAN74669.1| RecA [Burkholderia cepacia]
 gi|25991695|gb|AAN76888.1| RecA [Burkholderia cepacia]
 gi|25991755|gb|AAN76918.1| RecA [Burkholderia cepacia]
 gi|54633818|gb|AAV36019.1| RecA [Burkholderia sp. KBC-3]
          Length = 333

 Score =  478 bits (1231), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|30313402|gb|AAM55295.1| RecA [Burkholderia cepacia]
          Length = 333

 Score =  478 bits (1230), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|70904892|gb|AAZ14024.1| RecA [Burkholderia cenocepacia]
          Length = 330

 Score =  478 bits (1230), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+V+
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVS 324


>gi|25991745|gb|AAN76913.1| RecA [Burkholderia cepacia]
          Length = 333

 Score =  478 bits (1230), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 229/333 (68%), Positives = 287/333 (86%), Gaps = 3/333 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GDATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA--DSLLQE 345
            FLREN EIA  IE+ +R++ G+V+  D ++ E
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVSMPDGVVHE 332


>gi|25991763|gb|AAN76922.1| RecA [Burkholderia cepacia]
          Length = 334

 Score =  478 bits (1230), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/324 (70%), Positives = 282/324 (87%), Gaps = 1/324 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLV 338
            FLREN EIA  IE+ +R++ G+V
Sbjct: 300 EFLRENPEIAREIENRIRESLGVV 323


>gi|89092117|ref|ZP_01165072.1| recombinase A [Oceanospirillum sp. MED92]
 gi|89083852|gb|EAR63069.1| recombinase A [Oceanospirillum sp. MED92]
          Length = 346

 Score =  478 bits (1230), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 234/353 (66%), Positives = 285/353 (80%), Gaps = 12/353 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+AALSQI+R +GKGA+M++G Q    E I  VS+GSLGLDIALGIGG P GRIV
Sbjct: 4   NRKKALDAALSQIERQFGKGAVMRMGDQPR--EAIPSVSTGSLGLDIALGIGGLPYGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  +A++QK G TCAFVDAEHALD IYA KLGVD+ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVVAEAQKQGKTCAFVDAEHALDPIYAEKLGVDVDSLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT ++
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTGNV 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S C+LVFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR G+IK  D + GN+T
Sbjct: 182 KSSNCLLVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGAIKQGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF+Q EF IMYG+GI   GE+IDLGVK  +VDKSGAW+++ G ++GQG+
Sbjct: 242 RVKVVKNKVSPPFRQAEFQIMYGQGIYHMGEVIDLGVKEGLVDKSGAWYAYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N+  FL EN +IA  IE+ LR         LL  P       A++D+++N++
Sbjct: 302 ANASKFLEENPQIANEIETELRSR-------LLSNP---LDKPAEEDESENLD 344


>gi|25229185|gb|AAN74662.1| RecA [Burkholderia stabilis]
 gi|25991733|gb|AAN76907.1| RecA [Burkholderia stabilis]
          Length = 333

 Score =  478 bits (1230), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|319431775|gb|ADP92391.2| recombinase [Burkholderia cepacia]
          Length = 329

 Score =  478 bits (1230), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|25991711|gb|AAN76896.1| RecA [Burkholderia cepacia]
          Length = 333

 Score =  478 bits (1230), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEATEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|25229189|gb|AAN74664.1| RecA [Burkholderia cepacia]
 gi|25229191|gb|AAN74665.1| RecA [Burkholderia cepacia]
 gi|25229193|gb|AAN74666.1| RecA [Burkholderia cepacia]
 gi|25229195|gb|AAN74667.1| RecA [Burkholderia cepacia]
          Length = 333

 Score =  478 bits (1230), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEATEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|25991689|gb|AAN76885.1| RecA [Burkholderia cepacia]
 gi|204342697|gb|ACI01436.1| RecA [Burkholderia sp. MS14]
          Length = 334

 Score =  478 bits (1230), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/324 (70%), Positives = 282/324 (87%), Gaps = 1/324 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLV 338
            FLREN EIA  IE+ +R++ G+V
Sbjct: 300 EFLRENPEIAREIENRIRESLGVV 323


>gi|54633820|gb|AAV36020.1| RecA [Burkholderia sp. KBC-4]
          Length = 333

 Score =  478 bits (1229), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/324 (70%), Positives = 282/324 (87%), Gaps = 1/324 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLV 338
            FLREN EIA  IE+ +R++ G+V
Sbjct: 300 EFLRENPEIAREIENRIRESLGVV 323


>gi|78485933|ref|YP_391858.1| recA protein [Thiomicrospira crunogena XCL-2]
 gi|123741557|sp|Q31F89|RECA_THICR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|78364219|gb|ABB42184.1| RecA protein [Thiomicrospira crunogena XCL-2]
          Length = 347

 Score =  478 bits (1229), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 229/341 (67%), Positives = 290/341 (85%), Gaps = 7/341 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALEAAL QI++ +GKG+IM++G +G+I + I+ VS+GSLGLD+ALGIGG P+GR+V
Sbjct: 4   NKKKALEAALGQIEKQFGKGSIMRMGDKGAIRD-IDSVSTGSLGLDVALGIGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GGT AFVDAEHALD IYA KLGVD+ NLL+SQPDTG
Sbjct: 63  EIYGPESSGKTTLTLHAIAEMQKMGGTAAFVDAEHALDPIYAEKLGVDIDNLLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSGAVDI+++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT++I
Sbjct: 123 EQALEITDSLVRSGAVDIVIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+  +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK  D I GN+T
Sbjct: 183 KRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKKGDEILGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQVEF+I+YG+GIS  GE+IDLGVK  +++K+GAW+S++GQ++GQG+
Sbjct: 243 RVKVVKNKVSPPFKQVEFEILYGQGISREGEVIDLGVKEKLIEKAGAWYSYQGQKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQ------NAGLVADSLLQE 345
           +N + FL++N +I E ++  +++      NA    D  L E
Sbjct: 303 DNVRQFLKDNPDIYETLQVQIKERLMPKPNAPKATDEALDE 343


>gi|25229183|gb|AAN74661.1| RecA [Burkholderia dolosa]
 gi|25991707|gb|AAN76894.1| RecA [Burkholderia dolosa]
 gi|25991709|gb|AAN76895.1| RecA [Burkholderia dolosa]
 gi|34223993|gb|AAQ63160.1| RecA [Burkholderia dolosa]
 gi|56849543|gb|AAW31631.1| RecA [Burkholderia dolosa]
          Length = 333

 Score =  478 bits (1229), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+ A
Sbjct: 300 EFLRENPEIAREIENRIRESLGVAA 324


>gi|25991679|gb|AAN76880.1| RecA [Burkholderia cepacia]
 gi|25991765|gb|AAN76923.1| RecA [Burkholderia cepacia]
          Length = 334

 Score =  478 bits (1229), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/325 (69%), Positives = 282/325 (86%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+ A
Sbjct: 300 EFLRENPEIAREIENRIRESLGVAA 324


>gi|25991673|gb|AAN76877.1| RecA [Burkholderia multivorans]
 gi|25991675|gb|AAN76878.1| RecA [Burkholderia multivorans]
 gi|25991677|gb|AAN76879.1| RecA [Burkholderia multivorans]
          Length = 334

 Score =  477 bits (1228), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+ A
Sbjct: 300 EFLRENPEIAREIENRIRESLGVAA 324


>gi|25991753|gb|AAN76917.1| RecA [Burkholderia cepacia]
          Length = 333

 Score =  477 bits (1228), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GDATEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|25991701|gb|AAN76891.1| RecA [Burkholderia cepacia]
          Length = 333

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 227/325 (69%), Positives = 282/325 (86%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+ A
Sbjct: 300 EFLRENPEIAREIENRIRESLGVAA 324


>gi|242133650|gb|ACS87936.1| RecA [Burkholderia cepacia]
          Length = 333

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 226/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ Q+ GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQRIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|70904911|gb|AAZ14033.1| RecA [Burkholderia ambifaria]
          Length = 328

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 225/323 (69%), Positives = 282/323 (87%), Gaps = 1/323 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGP
Sbjct: 1   LAAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALE
Sbjct: 60  ESSGKTTLTLQVVAKLQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           ITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C
Sbjct: 120 ITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNC 179

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVV
Sbjct: 180 LVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVV 239

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ 
Sbjct: 240 KNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNARE 299

Query: 316 FLRENIEIAENIESLLRQNAGLV 338
           FLREN EIA  IE+ +R++ G+V
Sbjct: 300 FLRENPEIAREIENRIRESLGVV 322


>gi|25991761|gb|AAN76921.1| RecA [Burkholderia cepacia]
 gi|25991767|gb|AAN76924.1| RecA [Burkholderia cepacia]
          Length = 334

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 227/325 (69%), Positives = 282/325 (86%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+ A
Sbjct: 300 EFLRENPEIAREIENRIRESLGVAA 324


>gi|25991735|gb|AAN76908.1| RecA [Burkholderia cepacia]
          Length = 333

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 226/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QA LMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQALLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|304570555|ref|YP_266064.2| recA protein [Candidatus Pelagibacter ubique HTCC1062]
          Length = 383

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 226/365 (61%), Positives = 294/365 (80%), Gaps = 16/365 (4%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K+KAL+AA+SQI   +GKG++M+LG + ++   +E +S+GSL LD+ALGIGG PKGR++
Sbjct: 21  EKNKALDAAMSQIIDNFGKGSVMKLGQRRAM--DVESISTGSLSLDVALGIGGLPKGRVI 78

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTLAL  +A++QK GG CAF+DAEHALD IYA+KLGVD + LLISQPDTG
Sbjct: 79  EVYGPESSGKTTLALQVLAEAQKAGGICAFIDAEHALDPIYAKKLGVDTEELLISQPDTG 138

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LV+SG++ +IVIDSVAALTPRAEIEG+MG+   G+Q+RLMSQALRKLT SI
Sbjct: 139 EQALEIADTLVKSGSISVIVIDSVAALTPRAEIEGEMGDHHVGLQSRLMSQALRKLTGSI 198

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S +  +++FINQ+RMKIGVMFGSPETT+GGNALKFYSSVR+DIRR+G+IK+ D I GN T
Sbjct: 199 SSTNTMMIFINQIRMKIGVMFGSPETTSGGNALKFYSSVRMDIRRIGAIKNGDEIIGNST 258

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK VEFD+MYG+GIS  GEL+DLG KA IV+K+GAW+++KG+++GQGR
Sbjct: 259 RVKVVKNKVAPPFKVVEFDLMYGKGISKVGELVDLGSKADIVEKAGAWYAYKGEKIGQGR 318

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL--------------LQEPAINTKDDADK 356
           EN+K +L +N +IA  IE  +R+ AG++A  +              ++EP + TK++   
Sbjct: 319 ENAKTYLEQNPKIAAEIEMAIREKAGVIAKKIEGNPLDPEKAAKDQIEEPKLETKEEVTP 378

Query: 357 DDTDN 361
               N
Sbjct: 379 PSKKN 383


>gi|157326963|gb|ABV44594.1| RecA [Burkholderia cenocepacia]
          Length = 325

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 226/324 (69%), Positives = 282/324 (87%), Gaps = 1/324 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGP
Sbjct: 1   LAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALE
Sbjct: 60  ESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           ITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C
Sbjct: 120 ITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNC 179

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVV
Sbjct: 180 LVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVV 239

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ 
Sbjct: 240 KNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNARE 299

Query: 316 FLRENIEIAENIESLLRQNAGLVA 339
           FLREN EIA  IE+ +R++ G+V+
Sbjct: 300 FLRENPEIAREIENRIRESLGVVS 323


>gi|224551677|gb|ACN54238.1| RecA [Burkholderia sp. LWAT8]
          Length = 331

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 226/322 (70%), Positives = 281/322 (87%), Gaps = 1/322 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPES
Sbjct: 2   AALAQIEKQFGKGSIMRMGD-GDATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEIT
Sbjct: 61  SGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEIT 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C++
Sbjct: 121 DALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLV 180

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKN
Sbjct: 181 IFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKN 240

Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317
           K++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FL
Sbjct: 241 KVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFL 300

Query: 318 RENIEIAENIESLLRQNAGLVA 339
           REN EIA  IE+ +R++ G+VA
Sbjct: 301 RENPEIAREIENRIRESLGVVA 322


>gi|28460070|emb|CAD67594.1| RecA protein [Burkholderia anthina]
          Length = 332

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 226/324 (69%), Positives = 282/324 (87%), Gaps = 1/324 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGP
Sbjct: 1   LAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALE
Sbjct: 60  ESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           ITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C
Sbjct: 120 ITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNC 179

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVV
Sbjct: 180 LVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVV 239

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ 
Sbjct: 240 KNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNARE 299

Query: 316 FLRENIEIAENIESLLRQNAGLVA 339
           FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 FLRENPEIAREIENRIRESLGVVA 323


>gi|150171047|emb|CAO01507.1| DNA recombination protein [Burkholderia metallica]
          Length = 334

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 226/324 (69%), Positives = 281/324 (86%), Gaps = 1/324 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G      E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-AEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLV 338
            FLREN EIA  IE+ +R++ G+V
Sbjct: 300 EFLRENPEIAREIENRIRESLGVV 323


>gi|70904890|gb|AAZ14023.1| RecA [Burkholderia cenocepacia]
          Length = 332

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 226/324 (69%), Positives = 282/324 (87%), Gaps = 1/324 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGP
Sbjct: 1   LAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALE
Sbjct: 60  ESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           ITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C
Sbjct: 120 ITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNC 179

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           +++FINQ+RMKIGVMFG+PETTTGGNA+KFYSSVRLDIRR+GSIK  D + GN+TRVKVV
Sbjct: 180 LVIFINQIRMKIGVMFGNPETTTGGNAVKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVV 239

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ 
Sbjct: 240 KNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNARE 299

Query: 316 FLRENIEIAENIESLLRQNAGLVA 339
           FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 FLRENPEIAREIENRIRESLGVVA 323


>gi|70904915|gb|AAZ14035.1| RecA [Burkholderia ambifaria]
          Length = 328

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 224/321 (69%), Positives = 281/321 (87%), Gaps = 1/321 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPES
Sbjct: 3   AALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPES 61

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEIT
Sbjct: 62  SGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEIT 121

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C++
Sbjct: 122 DALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLV 181

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKN
Sbjct: 182 IFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKN 241

Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317
           K++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FL
Sbjct: 242 KVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFL 301

Query: 318 RENIEIAENIESLLRQNAGLV 338
           REN EIA  IE+ +R++ G+V
Sbjct: 302 RENPEIAREIENRIRESLGVV 322


>gi|30313400|gb|AAM55292.1| RecA [Burkholderia cepacia]
          Length = 347

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/329 (69%), Positives = 288/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKQFGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA 331


>gi|33593529|ref|NP_881173.1| recombinase A [Bordetella pertussis Tohama I]
 gi|33597213|ref|NP_884856.1| recombinase A [Bordetella parapertussis 12822]
 gi|33601059|ref|NP_888619.1| recombinase A [Bordetella bronchiseptica RB50]
 gi|61230226|sp|P0A448|RECA_BORPE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|61230227|sp|P0A449|RECA_BORBR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|61230228|sp|P0A450|RECA_BORPA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|33572885|emb|CAE42821.1| RecA protein [Bordetella pertussis Tohama I]
 gi|33573640|emb|CAE37925.1| RecA protein [Bordetella parapertussis]
 gi|33575494|emb|CAE32572.1| RecA protein [Bordetella bronchiseptica RB50]
          Length = 353

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 224/319 (70%), Positives = 278/319 (87%), Gaps = 1/319 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           SQI++ +GKG+IM+ G    +   I+VVS+GSLGLDIALG+GG P+GR++E+YGPESSGK
Sbjct: 22  SQIEKQFGKGSIMRYGDN-EVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEVYGPESSGK 80

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA+ QK GGTCAFVDAEHALD  YA KLGV+L +LLISQPDTGEQALEITD L
Sbjct: 81  TTLTLQVIAEMQKLGGTCAFVDAEHALDVQYASKLGVNLTDLLISQPDTGEQALEITDAL 140

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT++I R+ C+++FI
Sbjct: 141 VRSGSVDLIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFI 200

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK  D + GN+TRVKVVKNK+A
Sbjct: 201 NQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKKGDEVVGNETRVKVVKNKVA 260

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
            PFKQ EFDIMYG GIS  GE+IDLGV+A++VDKSGAW+S+ G R+GQG++N + +L+E+
Sbjct: 261 PPFKQAEFDIMYGSGISREGEIIDLGVQANVVDKSGAWYSYSGNRIGQGKDNVREYLKEH 320

Query: 321 IEIAENIESLLRQNAGLVA 339
            E+A  IE+ +R+N G+V+
Sbjct: 321 KEMAIEIENKVRENQGIVS 339


>gi|86278347|gb|ABC88427.1| RecA [Burkholderia pyrrocinia]
 gi|116119162|gb|ABJ74751.1| RecA [Burkholderia sp. M301]
          Length = 347

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/329 (69%), Positives = 288/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKQFGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA 331


>gi|10121194|gb|AAG13109.1|AF143794_1 RecA [Burkholderia pyrrocinia]
          Length = 347

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 231/329 (70%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ GLVA
Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGLVA 331


>gi|239840193|gb|ACS31901.1| RecA [Burkholderia pyrrocinia]
          Length = 346

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/329 (69%), Positives = 288/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVA 330


>gi|254575572|gb|ACT68300.1| RecA [Burkholderia cepacia]
          Length = 346

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 231/329 (70%), Positives = 288/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVA 330


>gi|329906521|ref|ZP_08274403.1| RecA protein [Oxalobacteraceae bacterium IMCC9480]
 gi|327547277|gb|EGF32123.1| RecA protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 370

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 229/337 (67%), Positives = 291/337 (86%), Gaps = 1/337 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD +K ++  DKSKAL AAL+QI++ +GKG++M++ + G++ E ++VVS+GSLGLDIALG
Sbjct: 1   MDDKKAVSGSDKSKALAAALAQIEKQFGKGSVMRM-ADGAVVEEVQVVSTGSLGLDIALG 59

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG P+GR+VEIYGPESSGKTTL L TIA+ QK GGTCAF+DAEHALD  YA+KLG++L 
Sbjct: 60  VGGLPRGRVVEIYGPESSGKTTLTLQTIAEMQKLGGTCAFIDAEHALDVGYAQKLGINLS 119

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LLISQPDTGEQALEITD LVRSG VD+IVIDSVAALTPRAEIEGDMG+SLPG+QARLMS
Sbjct: 120 ELLISQPDTGEQALEITDALVRSGGVDLIVIDSVAALTPRAEIEGDMGDSLPGLQARLMS 179

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT SI+R+  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK
Sbjct: 180 QALRKLTGSINRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIK 239

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             D + GN+T+VKVVKNK+A PF++  FDI+YGEG+S  GE++DLG  A IV+K+GAW+S
Sbjct: 240 SGDEVIGNETKVKVVKNKIAPPFREAHFDILYGEGVSREGEILDLGADAKIVEKAGAWYS 299

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           + G+R+GQG++N++ FL+E  E+A  IE+ +R + G+
Sbjct: 300 YNGERIGQGKDNARTFLKERPELAREIENKVRVSLGV 336


>gi|255021553|ref|ZP_05293596.1| RecA protein [Acidithiobacillus caldus ATCC 51756]
 gi|254968941|gb|EET26460.1| RecA protein [Acidithiobacillus caldus ATCC 51756]
          Length = 347

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 227/324 (70%), Positives = 280/324 (86%), Gaps = 1/324 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +SKAL AALSQI + +GKGAIM+LG Q ++ + I+V S+GSLGLD+ALG+GG P+GR+VE
Sbjct: 5   RSKALAAALSQIDKQFGKGAIMRLGEQSAV-KDIQVYSTGSLGLDLALGVGGLPRGRVVE 63

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA  Q +GGT AF+DAEHALD  YA+KLGVDL+NLLISQPDTGE
Sbjct: 64  IYGPESSGKTTLTLHAIASCQASGGTAAFIDAEHALDPSYAQKLGVDLENLLISQPDTGE 123

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DMLVRSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++IS
Sbjct: 124 QALEIADMLVRSGAVDLIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIS 183

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           R+  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK  D I G+ TR
Sbjct: 184 RTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGTIKKGDEILGSDTR 243

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF++ EF I YGEGIS   EL+DLGVK  I++KSGAW+S+KG+R+GQG++
Sbjct: 244 VKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVKFDIIEKSGAWYSYKGERIGQGKD 303

Query: 312 NSKIFLRENIEIAENIESLLRQNA 335
           N++ FL+E  E+A+ IE  +R  A
Sbjct: 304 NARQFLKERPEMAKEIEERVRAAA 327


>gi|171464132|ref|YP_001798245.1| recA protein [Polynucleobacter necessarius subsp. necessarius
           STIR1]
 gi|171193670|gb|ACB44631.1| recA protein [Polynucleobacter necessarius subsp. necessarius
           STIR1]
          Length = 362

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 227/331 (68%), Positives = 282/331 (85%), Gaps = 1/331 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL AAL+QI++ +GKG+IM+LG    I E I+VVSSGSLGLDIALG+GG  +GR++
Sbjct: 20  DKQKALTAALAQIEKQFGKGSIMRLG-DAEISEDIQVVSSGSLGLDIALGVGGLARGRVI 78

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GGTCAF+DAEHALD  YA KLGVD+ NLLISQPDTG
Sbjct: 79  EIYGPESSGKTTLTLHAIAEMQKLGGTCAFIDAEHALDVQYAGKLGVDVNNLLISQPDTG 138

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL P+AEIEGDMG+SLPG+QARLMSQALRKLT +I
Sbjct: 139 EQALEIADALVRSGSIDLIVIDSVAALVPKAEIEGDMGDSLPGLQARLMSQALRKLTGAI 198

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+   ++FINQ+RMKIGV+FGSPETTTGGNALKFY+S+RLDIRR+GSIK  D + GN+T
Sbjct: 199 KRTNTTVIFINQIRMKIGVIFGSPETTTGGNALKFYASMRLDIRRIGSIKKGDEVVGNET 258

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDIMYG GIS  GE+ID+GV+A +++KSG+W+S+ G R+GQG+
Sbjct: 259 RVKVVKNKVSPPFREAIFDIMYGAGISREGEIIDMGVEADLIEKSGSWYSYNGDRIGQGK 318

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           +N + FLREN  IA++IE+ +R+  G+ + S
Sbjct: 319 DNVREFLRENPAIAKDIEAKIREKLGVKSGS 349


>gi|25991691|gb|AAN76886.1| RecA [Burkholderia cepacia]
 gi|25991715|gb|AAN76898.1| RecA [Burkholderia cepacia]
 gi|25991717|gb|AAN76899.1| RecA [Burkholderia cepacia]
 gi|25991719|gb|AAN76900.1| RecA [Burkholderia cepacia]
 gi|25991723|gb|AAN76902.1| RecA [Burkholderia cepacia]
 gi|25991725|gb|AAN76903.1| RecA [Burkholderia cepacia]
 gi|25991747|gb|AAN76914.1| RecA [Burkholderia cepacia]
 gi|25991749|gb|AAN76915.1| RecA [Burkholderia cepacia]
 gi|298113121|gb|ADI58688.1| RecA [Burkholderia sp. CCUG 57241]
          Length = 333

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 227/325 (69%), Positives = 282/325 (86%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+ A
Sbjct: 300 EFLRENPEIALEIENRIRESLGVAA 324


>gi|91790514|ref|YP_551466.1| recombination protein RecA [Polaromonas sp. JS666]
 gi|91699739|gb|ABE46568.1| RecA protein [Polaromonas sp. JS666]
          Length = 377

 Score =  475 bits (1222), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 221/315 (70%), Positives = 278/315 (88%), Gaps = 1/315 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG IM+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 34  IEKQFGKGTIMKLGA-GEVIEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 92

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGTCAFVDAEHALD  YA+KLGV+L++LLISQPDTGEQALEI D L R
Sbjct: 93  LTLQVIAEMQKLGGTCAFVDAEHALDIQYAQKLGVNLQDLLISQPDTGEQALEIVDSLTR 152

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AE+EG+MG+SLPG+QARLMSQALRKLT++I ++ C+++FINQ
Sbjct: 153 SGAVDLIVVDSVAALTPKAELEGEMGDSLPGLQARLMSQALRKLTATIKKANCMVIFINQ 212

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  + + GN+TRVKVVKNK+ASP
Sbjct: 213 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGEEVIGNETRVKVVKNKVASP 272

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FK  EFDI+YGEGIS  GE++DLGV   IV+K+GAW++F G+++GQGR+NS+ FL+EN +
Sbjct: 273 FKTAEFDILYGEGISRLGEVLDLGVAGHIVEKAGAWYAFNGEKIGQGRDNSREFLKENPD 332

Query: 323 IAENIESLLRQNAGL 337
           +A  IE+ +R++ G+
Sbjct: 333 LAIEIENKVRESLGV 347


>gi|206559346|ref|YP_002230107.1| recombinase A [Burkholderia cenocepacia J2315]
 gi|205556004|sp|P0C7V2|RECA_BURCE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238693105|sp|B4EBY3|RECA_BURCJ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|10121168|gb|AAG13096.1|AF143781_1 RecA [Burkholderia cepacia]
 gi|10121170|gb|AAG13097.1|AF143782_1 RecA [Burkholderia cepacia]
 gi|216911|dbj|BAA14148.1| RecA protein [Burkholderia cepacia]
 gi|47054184|gb|AAT09202.1| recombination protein A [Burkholderia cepacia]
 gi|198035384|emb|CAR51260.1| putative recombinase A [Burkholderia cenocepacia J2315]
          Length = 347

 Score =  475 bits (1222), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 231/329 (70%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA 331


>gi|10121188|gb|AAG13106.1|AF143791_1 RecA [Burkholderia vietnamiensis]
 gi|10121192|gb|AAG13108.1|AF143793_1 RecA [Burkholderia vietnamiensis]
 gi|14572548|gb|AAK64608.1| RecA [Burkholderia cepacia]
 gi|116119168|gb|ABJ74754.1| RecA [Burkholderia sp. R398]
          Length = 347

 Score =  475 bits (1222), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 231/329 (70%), Positives = 288/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA 331


>gi|332037713|gb|EGI74164.1| protein RecA [Pseudoalteromonas haloplanktis ANT/505]
          Length = 347

 Score =  475 bits (1222), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 235/352 (66%), Positives = 287/352 (81%), Gaps = 11/352 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AALSQI+R +GKG+IM+LG   ++   IE VS+GSLG+DIALGIGG P GRIV
Sbjct: 4   NKQKALDAALSQIERQFGKGSIMKLGDNKAL--NIESVSTGSLGIDIALGIGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL L  IA++QK G TCAF+DAEHALD +YA+KLGV++ +L +SQPDTG
Sbjct: 62  EVYGPESSGKTTLTLQVIAEAQKEGKTCAFIDAEHALDPVYAQKLGVNIDDLFVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS AVD+++IDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT +I
Sbjct: 122 EQALEICDMLVRSSAVDVVIIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIRR+GS+K+ D + GN+T
Sbjct: 182 KRSNTLCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRIDIRRIGSVKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFKQ EF IMYGEGIS  GELIDLGVK  IV+K+GAW+S+ G ++GQG+
Sbjct: 242 RVKIVKNKVAPPFKQAEFIIMYGEGISKQGELIDLGVKHKIVEKAGAWYSYSGNKVGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK--DDTD 360
            NS  FL+EN EIA+ IE  LR+        LL +  I  +D  DK  DD D
Sbjct: 302 SNSIKFLKENPEIADEIEGKLRE-------MLLLKATIEPEDGEDKLGDDPD 346


>gi|25991743|gb|AAN76912.1| RecA [Burkholderia cepacia]
          Length = 333

 Score =  475 bits (1222), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 228/333 (68%), Positives = 285/333 (85%), Gaps = 3/333 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GDATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IV DSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVNDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA--DSLLQE 345
            FLREN EIA  IE+ +R++ G+V   D ++ E
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVTMPDGVVHE 332


>gi|116119152|gb|ABJ74746.1| RecA [Burkholderia sp. M279]
          Length = 347

 Score =  475 bits (1222), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/348 (66%), Positives = 296/348 (85%), Gaps = 4/348 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           +N++ FLREN EIA  IE+ +R++ G+VA   + +  +N  +  D+++
Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA---MPDGVVNEAEAMDEEE 347


>gi|51100544|emb|CAH10075.1| RecA protein [Burkholderia cenocepacia]
          Length = 347

 Score =  475 bits (1222), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/329 (69%), Positives = 288/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG+P+GR+V
Sbjct: 4   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGWPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+V+
Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVS 331


>gi|242133648|gb|ACS87935.1| RecA [Burkholderia cepacia]
          Length = 333

 Score =  475 bits (1222), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 226/325 (69%), Positives = 282/325 (86%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FL EN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLLENPEIAREIENRIRESLGVVA 324


>gi|78067448|ref|YP_370217.1| recombinase A [Burkholderia sp. 383]
 gi|123756106|sp|Q39D93|RECA_BURS3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|77968193|gb|ABB09573.1| RecA DNA recombination protein [Burkholderia sp. 383]
          Length = 348

 Score =  475 bits (1222), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 231/329 (70%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA 331


>gi|254575576|gb|ACT68302.1| RecA [Burkholderia cepacia]
          Length = 346

 Score =  475 bits (1222), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 231/329 (70%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVA 330


>gi|242133680|gb|ACS87951.1| RecA [Burkholderia cepacia]
          Length = 346

 Score =  475 bits (1222), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 231/329 (70%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEITDALVRSGSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+V+
Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVS 330


>gi|254575564|gb|ACT68296.1| RecA [Burkholderia cepacia]
 gi|254575578|gb|ACT68303.1| RecA [Burkholderia cepacia]
          Length = 346

 Score =  475 bits (1222), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 231/329 (70%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVA 330


>gi|134296854|ref|YP_001120589.1| recombinase A [Burkholderia vietnamiensis G4]
 gi|134140011|gb|ABO55754.1| recA protein [Burkholderia vietnamiensis G4]
          Length = 356

 Score =  474 bits (1221), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 231/329 (70%), Positives = 288/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 13  EKSKALAAALAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 72  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 132 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 252 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 311

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 312 DNAREFLRENPEIAREIENRIRESLGVVA 340


>gi|242133664|gb|ACS87943.1| RecA [Burkholderia cepacia]
 gi|242133668|gb|ACS87945.1| RecA [Burkholderia cepacia]
          Length = 346

 Score =  474 bits (1221), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 231/329 (70%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEITDALVRSGSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVA 330


>gi|254247311|ref|ZP_04940632.1| RecA/RadA recombinase [Burkholderia cenocepacia PC184]
 gi|124872087|gb|EAY63803.1| RecA/RadA recombinase [Burkholderia cenocepacia PC184]
          Length = 356

 Score =  474 bits (1221), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 13  EKSKALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 72  EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 132 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 252 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 311

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+V+
Sbjct: 312 DNAREFLRENPEIAREIENRIRESLGVVS 340


>gi|10121164|gb|AAG13094.1|AF143779_1 RecA [Burkholderia cepacia]
          Length = 347

 Score =  474 bits (1221), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 231/329 (70%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKSDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA 331


>gi|116119174|gb|ABJ74757.1| RecA [Burkholderia sp. R430]
          Length = 347

 Score =  474 bits (1221), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 231/329 (70%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDALVRSGSIDTIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA 331


>gi|107023588|ref|YP_621915.1| recombinase A [Burkholderia cenocepacia AU 1054]
 gi|116690672|ref|YP_836295.1| recombinase A [Burkholderia cenocepacia HI2424]
 gi|105893777|gb|ABF76942.1| recA protein [Burkholderia cenocepacia AU 1054]
 gi|116648761|gb|ABK09402.1| recA protein [Burkholderia cenocepacia HI2424]
          Length = 356

 Score =  474 bits (1221), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 13  EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 72  EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 132 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 252 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 311

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+V+
Sbjct: 312 DNAREFLRENPEIAREIENRIRESLGVVS 340


>gi|209967937|gb|ACB38234.2| RecA [Burkholderia cepacia]
          Length = 346

 Score =  474 bits (1221), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/337 (69%), Positives = 290/337 (86%), Gaps = 3/337 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA--DSLLQE 345
           +N++ FLREN EIA  IE+ +R++ G+V+  D L  E
Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVSMPDGLANE 338


>gi|118594481|ref|ZP_01551828.1| recombinase A [Methylophilales bacterium HTCC2181]
 gi|118440259|gb|EAV46886.1| recombinase A [Methylophilales bacterium HTCC2181]
          Length = 348

 Score =  474 bits (1221), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 223/330 (67%), Positives = 286/330 (86%), Gaps = 1/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AALSQI + +GKG+IM++     + EGI+ VS+GSLGLDIALGIGG P+GR++
Sbjct: 4   NKRKALDAALSQIDKQFGKGSIMRM-DDSQVIEGIQAVSTGSLGLDIALGIGGLPRGRVI 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKT+L+L T+AQ QKTGGT AF+DAEHALD  YA KLGV+++ LL+SQPDTG
Sbjct: 63  EIYGPESSGKTSLSLSTVAQLQKTGGTAAFIDAEHALDIQYAAKLGVNIEELLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VDI+VIDSVAALTPRAEIEGDMG+S  G+QARLMSQALRKLTS+I
Sbjct: 123 EQALEIADMLVRSGSVDIVVIDSVAALTPRAEIEGDMGDSHMGLQARLMSQALRKLTSNI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK  D + G +T
Sbjct: 183 KKTNTMVIFINQLRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKKGDEVIGAET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++ EFD++YGEGIS  GE+ID GV   IV+KSG+W+S+KG+++GQG+
Sbjct: 243 RVKVVKNKVAPPFRKAEFDVLYGEGISLEGEIIDQGVLLDIVEKSGSWYSYKGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           +N++IFL++N +I+  IE L+R N+ + A+
Sbjct: 303 DNARIFLKDNPKISNEIEQLVRDNSSITAE 332


>gi|242133670|gb|ACS87946.1| RecA [Burkholderia cepacia]
          Length = 345

 Score =  474 bits (1221), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 231/329 (70%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEITDALVRSGSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVA 330


>gi|115352750|ref|YP_774589.1| recombinase A [Burkholderia ambifaria AMMD]
 gi|172061614|ref|YP_001809266.1| recombinase A [Burkholderia ambifaria MC40-6]
 gi|115282738|gb|ABI88255.1| recA protein [Burkholderia ambifaria AMMD]
 gi|171994131|gb|ACB65050.1| recA protein [Burkholderia ambifaria MC40-6]
          Length = 359

 Score =  474 bits (1221), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 229/328 (69%), Positives = 287/328 (87%), Gaps = 1/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 13  EKSKALAAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 72  EIYGPESSGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 132 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 252 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 311

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338
           +N++ FLREN EIA  IE+ +R++ G+V
Sbjct: 312 DNAREFLRENPEIAREIENRIRESLGVV 339


>gi|91785109|ref|YP_560315.1| recombinase A [Burkholderia xenovorans LB400]
 gi|296157299|ref|ZP_06840135.1| recA protein [Burkholderia sp. Ch1-1]
 gi|29788007|emb|CAD67591.1| RecA protein [Burkholderia fungorum]
 gi|91689063|gb|ABE32263.1| RecA DNA recombination protein [Burkholderia xenovorans LB400]
 gi|295892635|gb|EFG72417.1| recA protein [Burkholderia sp. Ch1-1]
          Length = 358

 Score =  474 bits (1221), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 228/348 (65%), Positives = 299/348 (85%), Gaps = 3/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG++M+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 14  EKSKALAAALAQIEKQFGKGSVMRLGA-GEVIEDIQVVSTGSLGLDIALGVGGLPRGRVV 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 73  EIYGPESSGKTTLTLQVIAEMQKIGGTAAFIDAEHALDIQYASKLGVNVNDLLVSQPDTG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 133 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 193 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 252

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQG+
Sbjct: 253 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYSGERIGQGK 312

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           +N++ FLREN +IA  IE+ +R++ G+  +++ +   + + + AD+++
Sbjct: 313 DNAREFLRENPDIAREIENRIRESLGV--NAMAEAATVASAEVADEEE 358


>gi|70904901|gb|AAZ14028.1| RecA [Burkholderia pyrrocinia]
          Length = 323

 Score =  474 bits (1221), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 224/321 (69%), Positives = 281/321 (87%), Gaps = 1/321 (0%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           AL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESS
Sbjct: 1   ALAQIEKQFGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESS 59

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD
Sbjct: 60  GKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITD 119

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++
Sbjct: 120 ALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVI 179

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK
Sbjct: 180 FINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNK 239

Query: 259 MASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLR 318
           ++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLR
Sbjct: 240 VSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLR 299

Query: 319 ENIEIAENIESLLRQNAGLVA 339
           EN EIA  IE+ +R++ G+VA
Sbjct: 300 ENPEIAREIENRIRESLGVVA 320


>gi|157326957|gb|ABV44591.1| RecA [Burkholderia cenocepacia]
          Length = 325

 Score =  474 bits (1221), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 225/324 (69%), Positives = 281/324 (86%), Gaps = 1/324 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L A L+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGP
Sbjct: 1   LAAPLAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALE
Sbjct: 60  ESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           ITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C
Sbjct: 120 ITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNC 179

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVV
Sbjct: 180 LVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVV 239

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ 
Sbjct: 240 KNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNARE 299

Query: 316 FLRENIEIAENIESLLRQNAGLVA 339
           FLREN EIA  IE+ +R++ G+V+
Sbjct: 300 FLRENPEIAREIENRIRESLGVVS 323


>gi|85712116|ref|ZP_01043169.1| RecA recombinase [Idiomarina baltica OS145]
 gi|85694106|gb|EAQ32051.1| RecA recombinase [Idiomarina baltica OS145]
          Length = 360

 Score =  474 bits (1221), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/348 (66%), Positives = 284/348 (81%), Gaps = 9/348 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+SKAL+AALSQI+R +GKG+IM+LG   ++   I  VS+GSLGLD+ALGIGG P GR+V
Sbjct: 4   DRSKALDAALSQIERQFGKGSIMRLGDNQTM--DIASVSTGSLGLDVALGIGGLPFGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD IYA  LGV + +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAEAQKAGKTCAFVDAEHALDPIYAEALGVRVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGAVD++++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLTS+I
Sbjct: 122 EQALEICDMLVRSGAVDVVIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTSNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  + +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR G++K+ D + GN+T
Sbjct: 182 KKSNSLCIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGALKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK+  F IMYG GIS  GEL+DLGVK  +VDK+GAW+S+ G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFKEANFQIMYGRGISKEGELVDLGVKHKLVDKAGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            N+  FL+EN  IAE IES LR+        LL +PA   K++A  DD
Sbjct: 302 ANAMKFLQENSSIAEEIESKLRE-------LLLVKPAKKDKNEAAADD 342


>gi|110339314|gb|ABG67918.1| RecA [Burkholderia cenocepacia]
 gi|110339318|gb|ABG67920.1| RecA [Burkholderia cenocepacia]
 gi|209967939|gb|ACB12744.2| RecA [Burkholderia cepacia]
 gi|254575554|gb|ACT68291.1| RecA [Burkholderia cepacia]
          Length = 346

 Score =  474 bits (1221), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+V+
Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVS 330


>gi|110339316|gb|ABG67919.1| RecA [Burkholderia cenocepacia]
          Length = 346

 Score =  474 bits (1221), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+V+
Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVS 330


>gi|13021984|gb|AAK11600.1| RecA [Burkholderia ambifaria]
          Length = 350

 Score =  474 bits (1221), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 229/328 (69%), Positives = 287/328 (87%), Gaps = 1/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338
           +N++ FLREN EIA  IE+ +R++ G+V
Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVV 330


>gi|150171064|emb|CAO01515.1| DNA recombination protein [Burkholderia diffusa]
          Length = 333

 Score =  474 bits (1221), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 226/324 (69%), Positives = 280/324 (86%), Gaps = 1/324 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL+QI + +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGP
Sbjct: 1   LAAALAQIDKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALE
Sbjct: 60  ESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           ITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C
Sbjct: 120 ITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNC 179

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVV
Sbjct: 180 LVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVV 239

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ 
Sbjct: 240 KNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNARE 299

Query: 316 FLRENIEIAENIESLLRQNAGLVA 339
           FLREN EIA  IE+ +R++ G+ A
Sbjct: 300 FLRENPEIAREIENRIRESLGVAA 323


>gi|10121172|gb|AAG13098.1|AF143783_1 RecA [Burkholderia cepacia]
 gi|10121176|gb|AAG13100.1|AF143785_1 RecA [Burkholderia cepacia]
 gi|10121200|gb|AAG13112.1|AF143797_1 RecA [Burkholderia cepacia]
          Length = 347

 Score =  474 bits (1221), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+V+
Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVS 331


>gi|10121174|gb|AAG13099.1|AF143784_1 RecA [Burkholderia cepacia]
          Length = 347

 Score =  474 bits (1221), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+V+
Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVS 331


>gi|10121196|gb|AAG13110.1|AF143795_1 RecA [Burkholderia cepacia]
 gi|10121198|gb|AAG13111.1|AF143796_1 RecA [Burkholderia cepacia]
          Length = 350

 Score =  474 bits (1220), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 229/328 (69%), Positives = 287/328 (87%), Gaps = 1/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338
           +N++ FLREN EIA  IE+ +R++ G+V
Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVV 330


>gi|317402893|gb|EFV83435.1| RecA protein [Achromobacter xylosoxidans C54]
          Length = 354

 Score =  474 bits (1220), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 223/319 (69%), Positives = 277/319 (86%), Gaps = 1/319 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           SQI++ +GKG+IM+ G    +   I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGK
Sbjct: 22  SQIEKQFGKGSIMRYGDN-EVSHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK 80

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  +A+ QK GGTCAFVDAEHALD  YA KLGV+L +LLISQPDTGEQALEITD L
Sbjct: 81  TTLTLQVVAEMQKLGGTCAFVDAEHALDVQYASKLGVNLSDLLISQPDTGEQALEITDAL 140

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSG+VD+IV+DSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT++I ++ C+++FI
Sbjct: 141 VRSGSVDLIVVDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFI 200

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A
Sbjct: 201 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKGDEVVGNETRVKVVKNKVA 260

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
            PFKQ EFDIMYG GIS  GE+IDLGV A++VDKSGAW+S+ G R+GQG++N + +L+E+
Sbjct: 261 PPFKQAEFDIMYGAGISREGEIIDLGVAANVVDKSGAWYSYNGNRIGQGKDNVREYLKEH 320

Query: 321 IEIAENIESLLRQNAGLVA 339
            E+A  IE+ +R+N G+V+
Sbjct: 321 KELAIEIENRVRENQGIVS 339


>gi|10121178|gb|AAG13101.1|AF143786_1 RecA [Burkholderia cepacia ATCC 25416]
          Length = 347

 Score =  474 bits (1220), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/338 (68%), Positives = 290/338 (85%), Gaps = 3/338 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA--DSLLQEP 346
           +N++ FLREN EIA  IE+ +R++ G+VA  D    EP
Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVAMPDGAGNEP 340


>gi|116119166|gb|ABJ74753.1| RecA [Burkholderia sp. M318]
          Length = 347

 Score =  474 bits (1220), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 229/329 (69%), Positives = 288/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKQFGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVVGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IV+K+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVNKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA 331


>gi|10121180|gb|AAG13102.1|AF143787_1 RecA [Burkholderia cepacia]
 gi|10121182|gb|AAG13103.1|AF143788_1 RecA [Burkholderia cepacia]
 gi|116119160|gb|ABJ74750.1| RecA [Burkholderia sp. M297]
 gi|126256480|gb|ABO09805.1| RecA [Burkholderia sp. Y6]
          Length = 347

 Score =  474 bits (1220), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA 331


>gi|170734016|ref|YP_001765963.1| recombinase A [Burkholderia cenocepacia MC0-3]
 gi|169817258|gb|ACA91841.1| recA protein [Burkholderia cenocepacia MC0-3]
          Length = 356

 Score =  474 bits (1220), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 13  EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 72  EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 132 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 252 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 311

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+V+
Sbjct: 312 DNAREFLRENPEIAREIENRIRESLGVVS 340


>gi|116119170|gb|ABJ74755.1| RecA [Burkholderia sp. R419]
          Length = 347

 Score =  474 bits (1220), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 231/329 (70%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI+  +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEEQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA 331


>gi|237908827|gb|ACR33789.1| RecA [Burkholderia hospita]
          Length = 319

 Score =  474 bits (1220), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 222/319 (69%), Positives = 279/319 (87%), Gaps = 1/319 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AAL+QI++ +GKG++M+LG QG   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPES
Sbjct: 2   AALAQIEKQFGKGSVMRLG-QGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL L  +A+ QK GGT AF+DAEHALD  YA+KLGVD+ +LL+SQPDTGEQ LEI 
Sbjct: 61  SGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAQKLGVDVSDLLVSQPDTGEQTLEIA 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C++
Sbjct: 121 DALVRSGSIDMIVIDSVAALAPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLV 180

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKN
Sbjct: 181 IFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKN 240

Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317
           K+A PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQG++N++ FL
Sbjct: 241 KVAPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYSGERIGQGKDNAREFL 300

Query: 318 RENIEIAENIESLLRQNAG 336
           REN +IA  IE+ +R++ G
Sbjct: 301 RENPDIAREIENRIRESLG 319


>gi|126256484|gb|ABO09807.1| RecA [Burkholderia sp. Y20]
          Length = 347

 Score =  474 bits (1220), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVD++GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDRAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA 331


>gi|167561698|ref|ZP_02354614.1| recombinase A [Burkholderia oklahomensis EO147]
 gi|167568934|ref|ZP_02361808.1| recombinase A [Burkholderia oklahomensis C6786]
          Length = 359

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 228/329 (69%), Positives = 286/329 (86%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM+LG  G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 13  EKSKALAAALAQIEKQFGKGSIMRLGD-GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 72  EIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT SI
Sbjct: 132 EQALEIVDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTGSI 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE++DLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 252 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIVDLGVQAKIVDKAGAWYSYSGEKIGQGK 311

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+ A
Sbjct: 312 DNAREFLRENSEIAREIENRIRESLGVAA 340


>gi|10121190|gb|AAG13107.1|AF143792_1 RecA [Burkholderia vietnamiensis]
          Length = 347

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 231/329 (70%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI + +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIDKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA 331


>gi|242133674|gb|ACS87948.1| RecA [Burkholderia cepacia]
          Length = 346

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+V+
Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVS 330


>gi|186475208|ref|YP_001856678.1| recombinase A [Burkholderia phymatum STM815]
 gi|184191667|gb|ACC69632.1| recA protein [Burkholderia phymatum STM815]
          Length = 358

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 233/347 (67%), Positives = 296/347 (85%), Gaps = 7/347 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG++M+LG QG   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 14  EKSKALAAALAQIEKQFGKGSVMRLG-QGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA+KLGV++ +LL+SQPDTG
Sbjct: 73  EIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAQKLGVNVSDLLVSQPDTG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 133 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 193 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 252

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQG+
Sbjct: 253 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQGK 312

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           +N++ FLREN +IA  IE+ +R++ G+ A      PA N   DAD++
Sbjct: 313 DNAREFLRENADIAREIENRIRESLGVNA-----MPA-NAVVDADEE 353


>gi|242133662|gb|ACS87942.1| RecA [Burkholderia cepacia]
 gi|254575560|gb|ACT68294.1| RecA [Burkholderia cepacia]
          Length = 346

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 232/348 (66%), Positives = 296/348 (85%), Gaps = 4/348 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           +N++ FLREN EIA  IE+ +R++ G+VA   + +  +N  +  D+++
Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVA---MPDGVVNEAEAMDEEE 346


>gi|242133660|gb|ACS87941.1| RecA [Burkholderia cepacia]
          Length = 345

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVA 330


>gi|170703541|ref|ZP_02894296.1| recA protein [Burkholderia ambifaria IOP40-10]
 gi|171319347|ref|ZP_02908458.1| recA protein [Burkholderia ambifaria MEX-5]
 gi|170131553|gb|EDT00126.1| recA protein [Burkholderia ambifaria IOP40-10]
 gi|171095454|gb|EDT40424.1| recA protein [Burkholderia ambifaria MEX-5]
          Length = 359

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/328 (69%), Positives = 287/328 (87%), Gaps = 1/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 13  EKSKALAAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 72  EIYGPESSGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 132 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 252 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 311

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338
           +N++ FLREN EIA  IE+ +R++ G+V
Sbjct: 312 DNAREFLRENPEIAREIENRIRESLGVV 339


>gi|10121184|gb|AAG13104.1|AF143789_1 RecA [Burkholderia cepacia]
 gi|10121186|gb|AAG13105.1|AF143790_1 RecA [Burkholderia cepacia]
          Length = 347

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 232/348 (66%), Positives = 296/348 (85%), Gaps = 4/348 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           +N++ FLREN EIA  IE+ +R++ G+VA   + +  +N  +  D+++
Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA---MPDGVVNEAEAMDEEE 347


>gi|254575574|gb|ACT68301.1| RecA [Burkholderia cepacia]
          Length = 346

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/329 (69%), Positives = 288/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSI+  D + GN+T
Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIRKNDEVIGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVA 330


>gi|297614593|gb|ACS87947.2| RecA [Burkholderia cepacia]
          Length = 346

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+V+
Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVS 330


>gi|261291943|gb|ACX69976.1| RecA [Burkholderia cepacia]
          Length = 346

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVA 330


>gi|293604305|ref|ZP_06686712.1| recombination protein A [Achromobacter piechaudii ATCC 43553]
 gi|292817182|gb|EFF76256.1| recombination protein A [Achromobacter piechaudii ATCC 43553]
          Length = 353

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 224/318 (70%), Positives = 276/318 (86%), Gaps = 1/318 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+ G    +   I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 23  QIEKQFGKGSIMRYGDN-EVSHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 81

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGTCAFVDAEHALD  YA KLGV+L +LLISQPDTGEQALEITD LV
Sbjct: 82  TLTLQVIAEMQKIGGTCAFVDAEHALDVQYANKLGVNLTDLLISQPDTGEQALEITDALV 141

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT++I R+ C+++FIN
Sbjct: 142 RSGSVDLIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFIN 201

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A 
Sbjct: 202 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKGDEVVGNETRVKVVKNKVAP 261

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PFKQ EFDIMYG GIS  GE+IDLGV A++VDKSGAW+S+ G R+GQG++N + +L+E+ 
Sbjct: 262 PFKQAEFDIMYGAGISREGEIIDLGVAANVVDKSGAWYSYNGNRIGQGKDNVREYLKEHR 321

Query: 322 EIAENIESLLRQNAGLVA 339
           ++A  IE+ +R+N G+V+
Sbjct: 322 DMAIEIENRVRENQGIVS 339


>gi|254251505|ref|ZP_04944823.1| RecA/RadA recombinase [Burkholderia dolosa AUO158]
 gi|124894114|gb|EAY67994.1| RecA/RadA recombinase [Burkholderia dolosa AUO158]
          Length = 356

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 13  EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTG
Sbjct: 72  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 132 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 252 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 311

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+ A
Sbjct: 312 DNAREFLRENPEIAREIENRIRESLGVAA 340


>gi|88813101|ref|ZP_01128342.1| recA protein [Nitrococcus mobilis Nb-231]
 gi|88789585|gb|EAR20711.1| recA protein [Nitrococcus mobilis Nb-231]
          Length = 351

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 233/345 (67%), Positives = 285/345 (82%), Gaps = 9/345 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL  AL QI++ +GKG +M++G   ++ + + V+S+GSL LDIALGIGG P+GR+V
Sbjct: 6   NRKKALNLALGQIEKQFGKGTVMRMGDMQAVRD-VPVISTGSLSLDIALGIGGLPRGRVV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L TIA++QK GG  AFVDAEHALD  YA+KLGVD+  LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTLTLQTIAEAQKAGGIAAFVDAEHALDPDYAQKLGVDINELLLSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSGAVDIIV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 125 EQALEITDMLVRSGAVDIIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK  D I GNQT
Sbjct: 185 KRSHSLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKKGDEIIGNQT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFKQ EF+I+YGEGIS  GELI+LGV+  IV+K+GAW+S+ G+R+GQG+
Sbjct: 245 RVKVVKNKMAPPFKQAEFEILYGEGISRQGELIELGVREGIVEKAGAWYSYAGERIGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQ--------NAGLVADSLLQEPA 347
           +N + FL+   E+A  IES LR+        +AG VADS    PA
Sbjct: 305 DNVRSFLKAQPEVAVQIESRLREQLFSKPASSAGEVADSARTPPA 349


>gi|13021987|gb|AAK11601.1|AF323971_1 RecA [Burkholderia dolosa]
          Length = 347

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+ A
Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVAA 331


>gi|272894042|gb|ACZ96547.1| RecA [Burkholderia contaminans]
          Length = 348

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/328 (70%), Positives = 286/328 (87%), Gaps = 1/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338
           +N++ FLREN EIA  IE+ +R++ G+V
Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVV 330


>gi|149928250|ref|ZP_01916494.1| recombinase A [Limnobacter sp. MED105]
 gi|149823056|gb|EDM82297.1| recombinase A [Limnobacter sp. MED105]
          Length = 359

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 228/346 (65%), Positives = 288/346 (83%), Gaps = 4/346 (1%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           D R +    +K KAL AALSQI++ +GKG+IM+ G +  I + I+ VS+GSLGLDIALGI
Sbjct: 3   DLRTKNQSSEKVKALAAALSQIEKQFGKGSIMRFG-ENEIIDDIQSVSTGSLGLDIALGI 61

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGTCAF+DAEHALD  YA KLGV+L +
Sbjct: 62  GGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTCAFIDAEHALDVQYAAKLGVNLPD 121

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLISQPDTGEQALEI D LVRSG+VD++++DSVAALTP+AEIEGDMG+SLPG+QARLMSQ
Sbjct: 122 LLISQPDTGEQALEIVDALVRSGSVDLVIVDSVAALTPKAEIEGDMGDSLPGLQARLMSQ 181

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT++I R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIK 
Sbjct: 182 ALRKLTANIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIKK 241

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            + + G++TRVKVVKNK++ PFKQ EFDI+YG+G S  GE++DLGV    VDK+GAW+S+
Sbjct: 242 GEEVIGSETRVKVVKNKVSPPFKQAEFDILYGQGTSREGEVVDLGVLHGFVDKAGAWYSY 301

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
            G+++GQG++N++ FL+ N  +A  IE+ +R+  G+    LL+E A
Sbjct: 302 NGEKIGQGKDNARDFLKANPVMAAEIENKIREKLGV---RLLEEAA 344


>gi|30313404|gb|AAM55294.1| RecA [Burkholderia cepacia]
          Length = 333

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 231/329 (70%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 1   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 59

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 60  EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 119

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 120 EQALEITDALVRSGSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 179

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 180 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 239

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 240 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 299

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 DNAREFLRENPEIAREIENRIRESLGVVA 328


>gi|70904898|gb|AAZ14027.1| RecA [Burkholderia cenocepacia]
          Length = 328

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 225/325 (69%), Positives = 281/325 (86%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+ MKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIPMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
             LREN EIA  IE+ +R++ G+V+
Sbjct: 300 ELLRENPEIAREIENRIRESLGVVS 324


>gi|132241|sp|P16238|RECA_THIFE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|154653|gb|AAA27385.1| recA protein [Acidithiobacillus ferrooxidans]
          Length = 346

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 226/324 (69%), Positives = 274/324 (84%), Gaps = 1/324 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +SK L AALSQI + +GKGA+M+LG   +I + IEV S+GSLGLD+ALG+GG P+GR+VE
Sbjct: 5   RSKGLSAALSQIDKQFGKGAVMRLGDHNAI-KDIEVYSTGSLGLDLALGVGGLPRGRVVE 63

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA  Q  GGT AF+DAEHALD  YA KLGVDL+NLLISQPDTGE
Sbjct: 64  IYGPESSGKTTLTLHAIASCQAAGGTAAFIDAEHALDPGYAHKLGVDLENLLISQPDTGE 123

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DMLVRSGAVD+IVIDSVAALTP+AEIEG+MG+S  G+QARLMSQALR LT++IS
Sbjct: 124 QALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRNLTANIS 183

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           RS  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK  D + GN TR
Sbjct: 184 RSNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKKSDEVVGNDTR 243

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF++ EF I YGEGIS   EL+DLGVK  IV+KSGAW+S++G R+GQG++
Sbjct: 244 VKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVKFDIVEKSGAWYSYQGHRIGQGKD 303

Query: 312 NSKIFLRENIEIAENIESLLRQNA 335
           N++ +L+ + E+A NIE  +R  A
Sbjct: 304 NARQYLKVHPELAANIEQRIRAAA 327


>gi|116119172|gb|ABJ74756.1| RecA [Burkholderia sp. R425]
          Length = 347

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 123 EQTLEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA 331


>gi|242133678|gb|ACS87950.1| RecA [Burkholderia cepacia]
 gi|242133682|gb|ACS87952.1| RecA [Burkholderia cepacia]
          Length = 336

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+V+
Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVS 330


>gi|157326967|gb|ABV44596.1| RecA [Burkholderia multivorans]
          Length = 319

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 224/320 (70%), Positives = 280/320 (87%), Gaps = 1/320 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPES
Sbjct: 1   AALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPES 59

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEIT
Sbjct: 60  SGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEIT 119

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C++
Sbjct: 120 DALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLV 179

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKN
Sbjct: 180 IFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKN 239

Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317
           K++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FL
Sbjct: 240 KVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFL 299

Query: 318 RENIEIAENIESLLRQNAGL 337
           REN EIA  IE+ +R++ G+
Sbjct: 300 RENPEIAREIENRIRESLGV 319


>gi|167585552|ref|ZP_02377940.1| recombinase A [Burkholderia ubonensis Bu]
          Length = 356

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/329 (69%), Positives = 286/329 (86%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 13  EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 72  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 132 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 252 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 311

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+ A
Sbjct: 312 DNAREFLRENPEIAREIENRIRESLGVAA 340


>gi|157326971|gb|ABV44598.1| RecA [Burkholderia multivorans]
          Length = 321

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 225/322 (69%), Positives = 280/322 (86%), Gaps = 1/322 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+ SLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTSSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAG 336
            FLREN EIA  IE+ +R++ G
Sbjct: 300 EFLRENPEIAREIENRIRESLG 321


>gi|239995698|ref|ZP_04716222.1| recombinase A [Alteromonas macleodii ATCC 27126]
          Length = 348

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/343 (66%), Positives = 284/343 (82%), Gaps = 3/343 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AA+ QI++ +GKGAIM+LG   ++   IE +S+GSL +DIALGIGG P GR+V
Sbjct: 4   NKSKALTAAVGQIEKQFGKGAIMRLGDNQAM--DIEAISTGSLTIDIALGIGGLPCGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++Q+ G TCAFVDAEHALD +YA KLGV++  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAEAQRKGKTCAFVDAEHALDPVYAEKLGVNIDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGAVD++++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT++I
Sbjct: 122 EQALEICDMLVRSGAVDVVIVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTANI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  + +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G++K+ D + GN+T
Sbjct: 182 KRSNTLCIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAVKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF I YGEGIS   ELIDLGVK  +VDK+GAW+S+KG R+GQG+
Sbjct: 242 RVKVVKNKVAPPFKQAEFMIRYGEGISKEAELIDLGVKQKLVDKAGAWYSYKGDRIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
            N   FL+EN EIA  IE+ +RQ   L++ ++  E A+  ++D
Sbjct: 302 ANVMKFLKENPEIANEIETKIRQEL-LLSKTMKAEEAVPQQED 343


>gi|150171056|emb|CAO01511.1| DNA recombination protein [Burkholderia latens]
          Length = 341

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 231/328 (70%), Positives = 286/328 (87%), Gaps = 1/328 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VE
Sbjct: 2   KSKALAAALAQIEKQFGKGSIMRMGD-GEAKEDIQVVSTGSLGLDIALGVGGLPRGRVVE 60

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGE
Sbjct: 61  IYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGE 120

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I 
Sbjct: 121 QALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIK 180

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TR
Sbjct: 181 RTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETR 240

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++
Sbjct: 241 VKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKD 300

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVA 339
           N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 301 NAREFLRENPEIAREIENRIRESLGVVA 328


>gi|126256482|gb|ABO09806.1| RecA [Burkholderia sp. Y10]
          Length = 347

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 231/329 (70%), Positives = 286/329 (86%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R + G+VA
Sbjct: 303 DNAREFLRENPEIAREIENRIRGSLGVVA 331


>gi|150171050|emb|CAO01508.1| DNA recombination protein [Burkholderia seminalis]
          Length = 333

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 224/324 (69%), Positives = 281/324 (86%), Gaps = 1/324 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGP
Sbjct: 1   LAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALE
Sbjct: 60  ESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           ITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C
Sbjct: 120 ITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNC 179

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVV
Sbjct: 180 LVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVV 239

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ 
Sbjct: 240 KNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNARE 299

Query: 316 FLRENIEIAENIESLLRQNAGLVA 339
           FLREN EIA  IE+ +R++ G+ +
Sbjct: 300 FLRENPEIAREIENRIRESLGVAS 323


>gi|315127429|ref|YP_004069432.1| RecA protein (recombinase A) [Pseudoalteromonas sp. SM9913]
 gi|315015943|gb|ADT69281.1| RecA protein (recombinase A) [Pseudoalteromonas sp. SM9913]
          Length = 347

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 226/323 (69%), Positives = 276/323 (85%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AALSQI+R +GKG+IM+LG   ++   I+ VS+GSLG+DIALGIGG P GRIV
Sbjct: 4   NKQKALDAALSQIERQFGKGSIMKLGDNKAL--NIDAVSTGSLGIDIALGIGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL L  IA++QK G TCAFVDAEHALD IYA+KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTLTLQVIAEAQKEGKTCAFVDAEHALDPIYAQKLGVNIDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS AVD++++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT +I
Sbjct: 122 EQALEICDMLVRSSAVDVVIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIRR+GS+K+ D + GN+T
Sbjct: 182 KRSNTLCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRIDIRRIGSVKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFKQ EF IMYGEGIS  GELIDLGVK  +V+K+GAW+S+ G ++GQG+
Sbjct: 242 RVKIVKNKVAPPFKQAEFIIMYGEGISKQGELIDLGVKHKLVEKAGAWYSYNGNKVGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            NS  FL+EN EIA+ IE  LR+
Sbjct: 302 SNSIKFLKENPEIADEIEGKLRE 324


>gi|161523830|ref|YP_001578842.1| recombinase A [Burkholderia multivorans ATCC 17616]
 gi|221200152|ref|ZP_03573195.1| recA protein [Burkholderia multivorans CGD2M]
 gi|221206695|ref|ZP_03579707.1| recA protein [Burkholderia multivorans CGD2]
 gi|221211334|ref|ZP_03584313.1| recA protein [Burkholderia multivorans CGD1]
 gi|160341259|gb|ABX14345.1| recA protein [Burkholderia multivorans ATCC 17616]
 gi|221168695|gb|EEE01163.1| recA protein [Burkholderia multivorans CGD1]
 gi|221173350|gb|EEE05785.1| recA protein [Burkholderia multivorans CGD2]
 gi|221180391|gb|EEE12795.1| recA protein [Burkholderia multivorans CGD2M]
 gi|325520210|gb|EGC99384.1| recombinase A [Burkholderia sp. TJI49]
          Length = 357

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 13  EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTG
Sbjct: 72  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 132 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 252 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 311

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+ A
Sbjct: 312 DNAREFLRENPEIAREIENRIRESLGVAA 340


>gi|157326973|gb|ABV44599.1| RecA [Burkholderia multivorans]
 gi|157326985|gb|ABV44605.1| RecA [Burkholderia multivorans]
          Length = 319

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 224/319 (70%), Positives = 279/319 (87%), Gaps = 1/319 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPES
Sbjct: 2   AALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEIT
Sbjct: 61  SGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEIT 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C++
Sbjct: 121 DALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLV 180

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKN
Sbjct: 181 IFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKN 240

Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317
           K++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FL
Sbjct: 241 KVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFL 300

Query: 318 RENIEIAENIESLLRQNAG 336
           REN EIA  IE+ +R++ G
Sbjct: 301 RENPEIAREIENRIRESLG 319


>gi|149374513|ref|ZP_01892287.1| recA protein [Marinobacter algicola DG893]
 gi|149361216|gb|EDM49666.1| recA protein [Marinobacter algicola DG893]
          Length = 350

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 224/336 (66%), Positives = 276/336 (82%), Gaps = 9/336 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL AALSQI+R +GKGA+M++G Q    E I  VS+GSLGLD+ALGIGG P GRI 
Sbjct: 4   NRKKALGAALSQIERQFGKGAVMKMGDQPR--EAIPAVSTGSLGLDVALGIGGLPYGRIC 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD +YA KLGV++  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAEAQKAGKTCAFVDAEHALDPVYAEKLGVNVDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI+DMLVRS AVD+I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT ++
Sbjct: 122 EQALEISDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNV 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+L+FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++KD D + GN+T
Sbjct: 182 KHANCLLIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKDGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EF IMYG+GI    E++D+GVK   VDKSGAW+++KG ++GQG+
Sbjct: 242 RVKVVKNKVSPPFKQAEFQIMYGKGIYHMAEVLDMGVKEGFVDKSGAWYAYKGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
            N+  FL EN+EIA  IE+ +R       D L+ +P
Sbjct: 302 ANACKFLEENLEIANEIEAAVR-------DKLMPKP 330


>gi|167835573|ref|ZP_02462456.1| recombinase A [Burkholderia thailandensis MSMB43]
          Length = 356

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/329 (69%), Positives = 286/329 (86%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 13  EKSKALAAALAQIEKQFGKGSIMRLGD-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 72  EIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT SI
Sbjct: 132 EQALEIVDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTGSI 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 252 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 311

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA +IE+ +R++ G+ A
Sbjct: 312 DNAREFLRENPEIARDIENRIRESLGVAA 340


>gi|254575568|gb|ACT68298.1| RecA [Burkholderia cepacia]
          Length = 347

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+ A
Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVAA 330


>gi|189351408|ref|YP_001947036.1| recombinase A [Burkholderia multivorans ATCC 17616]
 gi|205562578|sp|A9AFT0|RECA_BURM1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|10121154|gb|AAG13089.1|AF143774_1 RecA [Burkholderia multivorans]
 gi|10121156|gb|AAG13090.1|AF143775_1 RecA [Burkholderia multivorans ATCC 17616]
 gi|10121158|gb|AAG13091.1|AF143776_1 RecA [Burkholderia multivorans]
 gi|10121160|gb|AAG13092.1|AF143777_1 RecA [Burkholderia multivorans]
 gi|10121162|gb|AAG13093.1|AF143778_1 RecA [Burkholderia multivorans]
 gi|1575711|gb|AAB09577.1| RecA protein [Burkholderia cepacia]
 gi|189335430|dbj|BAG44500.1| recombination protein [Burkholderia multivorans ATCC 17616]
          Length = 348

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+ A
Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVAA 331


>gi|116119158|gb|ABJ74749.1| RecA [Burkholderia sp. M293]
          Length = 347

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/329 (69%), Positives = 286/329 (86%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A I DK+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIADKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+V+
Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVS 331


>gi|116119150|gb|ABJ74745.1| RecA [Burkholderia sp. M229]
          Length = 347

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 232/348 (66%), Positives = 295/348 (84%), Gaps = 4/348 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALK YSSVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKLYSSVRLDIRRIGSIKKNDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           +N++ FLREN EIA  IE+ +R++ G+VA   + +  +N  +  D+++
Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA---MPDGVVNEAEAMDEEE 347


>gi|70904880|gb|AAZ14018.1| RecA [Burkholderia cenocepacia]
          Length = 324

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 225/322 (69%), Positives = 280/322 (86%), Gaps = 1/322 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPES
Sbjct: 2   AALAQIEKQFGKGSIMRMGD-GEAKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEIT
Sbjct: 61  SGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEIT 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C++
Sbjct: 121 DALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLV 180

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKN
Sbjct: 181 IFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKN 240

Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317
           K++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FL
Sbjct: 241 KVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFL 300

Query: 318 RENIEIAENIESLLRQNAGLVA 339
           REN EIA  IE+ +R++ G+ A
Sbjct: 301 RENPEIALEIENRIRESLGVAA 322


>gi|242133676|gb|ACS87949.1| RecA [Burkholderia cepacia]
          Length = 346

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLG+++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGMNVPELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+V+
Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVS 330


>gi|150171052|emb|CAO01509.1| DNA recombination protein [Burkholderia seminalis]
          Length = 330

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 227/331 (68%), Positives = 284/331 (85%), Gaps = 5/331 (1%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEI
Sbjct: 1   SKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R
Sbjct: 120 ALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKR 179

Query: 193 SKCIL----VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           + C++    +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 180 TNCLVTASCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 240 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           G++N++ FLREN EIA  IE+ +R++ G+ +
Sbjct: 300 GKDNAREFLRENPEIAREIENRIRESLGVAS 330


>gi|254575556|gb|ACT68292.1| RecA [Burkholderia cepacia]
 gi|254575558|gb|ACT68293.1| RecA [Burkholderia cepacia]
          Length = 346

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 231/348 (66%), Positives = 295/348 (84%), Gaps = 4/348 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           +N++ FLREN EIA  IE+ +R++ G+ A   + +  +N  +  D+++
Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVAA---MPDGVVNEAEAMDEEE 346


>gi|10121166|gb|AAG13095.1|AF143780_1 RecA [Burkholderia cepacia]
          Length = 347

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGG+ALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGSALKFYSSVRLDIRRIGSIKKNDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA 331


>gi|16125339|ref|NP_419903.1| recombinase A [Caulobacter crescentus CB15]
 gi|221234078|ref|YP_002516514.1| recombinase A [Caulobacter crescentus NA1000]
 gi|20178056|sp|Q9A9A7|RECA_CAUCR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|254790426|sp|B8H3I7|RECA_CAUCN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|13422391|gb|AAK23071.1| recA protein [Caulobacter crescentus CB15]
 gi|220963250|gb|ACL94606.1| RecA protein [Caulobacter crescentus NA1000]
          Length = 356

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 235/333 (70%), Positives = 287/333 (86%), Gaps = 2/333 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK +ALEAAL+QI R +GKG++M+LG +G +   IE VS+GSLGLDIALGIGG PKGRIV
Sbjct: 16  DKQRALEAALAQIDRAFGKGSVMKLGEKGKVE--IESVSTGSLGLDIALGIGGLPKGRIV 73

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTLALH +A+ QK GGT AFVDAEHALD  YA KLGV+L NLL+SQPD G
Sbjct: 74  EVYGPESSGKTTLALHVVAEVQKAGGTAAFVDAEHALDPSYAYKLGVNLDNLLVSQPDNG 133

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSGAVDI+V+DSVAALTP+AEIEG+MG+SLPG+QARLMSQALRKLT+SI
Sbjct: 134 EQALEITDTLVRSGAVDIVVVDSVAALTPKAEIEGEMGDSLPGLQARLMSQALRKLTASI 193

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++  I++FINQ+R KIGVM+GSPETTTGGNALKFY+SVRLDIRR GS+K +D I GN  
Sbjct: 194 NKANTIVIFINQIRHKIGVMYGSPETTTGGNALKFYASVRLDIRRTGSVKARDEIVGNNV 253

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++VEFDIMYGEGIS  GE+IDLGVKA I+DK+G+WFS+  QR+GQGR
Sbjct: 254 RVKVVKNKVAPPFREVEFDIMYGEGISKLGEVIDLGVKAGIIDKAGSWFSYGSQRIGQGR 313

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343
           +N + FL+ N ++A +IE  +R+++  + + LL
Sbjct: 314 DNVREFLKNNPDVAADIEKAVRKSSQKIEEELL 346


>gi|254575566|gb|ACT68297.1| RecA [Burkholderia cepacia]
          Length = 346

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/329 (69%), Positives = 286/329 (86%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PET TGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETMTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVA 330


>gi|148653778|ref|YP_001280871.1| recombinase A [Psychrobacter sp. PRwf-1]
 gi|172048565|sp|A5WGY0|RECA_PSYWF RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|148572862|gb|ABQ94921.1| recA protein [Psychrobacter sp. PRwf-1]
          Length = 349

 Score =  472 bits (1215), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 226/336 (67%), Positives = 278/336 (82%), Gaps = 7/336 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K+KAL+AAL QI++ +GK  IM LG   +  + ++VVS+GSLGLDIALGIGG PKGRI+
Sbjct: 4   NKAKALKAALGQIEKQFGKNTIMHLGDNSATLD-VDVVSTGSLGLDIALGIGGLPKGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGTCAF+DAEHALD IYARKLGV+  +LL+SQPD G
Sbjct: 63  EIYGPESSGKTTLTLQAIAECQKQGGTCAFIDAEHALDPIYARKLGVNTDDLLVSQPDNG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSGA+D+IVIDSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T + 
Sbjct: 123 EQALEITDMLVRSGALDMIVIDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNA 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K  D I GNQT
Sbjct: 183 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKSGDEIIGNQT 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV+KNKMA PF+Q EF+I YGEG +   E+IDLGV+  +V K+GAW+S+  +++GQG+
Sbjct: 243 RVKVIKNKMAPPFRQAEFEITYGEGTNHLAEVIDLGVEIGVVGKAGAWYSYGDEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
            NS +FL++N  IAE IE+ +R      A+ L  EP
Sbjct: 303 ANSVLFLKDNPAIAEEIEAKIR------AEKLAVEP 332


>gi|300113490|ref|YP_003760065.1| recA protein [Nitrosococcus watsonii C-113]
 gi|299539427|gb|ADJ27744.1| recA protein [Nitrosococcus watsonii C-113]
          Length = 342

 Score =  472 bits (1215), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 222/324 (68%), Positives = 282/324 (87%), Gaps = 1/324 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL AALSQI++ +GKGA+M+LG   SI   +EV+S+GSLGLDIALG+GG P+GR+V
Sbjct: 4   NRKKALGAALSQIEKQFGKGAVMRLGD-ASIVREVEVISTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPE+SGKTTLAL   A++Q  GGT AFVDAEHALD  YA +LGV++++LL+SQPDTG
Sbjct: 63  EIFGPEASGKTTLALQVAAEAQALGGTAAFVDAEHALDPQYAERLGVNVEDLLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGAVD++VIDSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 123 EQALEIADMLVRSGAVDVVVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRRVG++K  D I GN+T
Sbjct: 183 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGALKKGDEIVGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFKQV FDI+YG G+S  GE+IDLGV+  +++K+GAW+S+KG+R+GQGR
Sbjct: 243 RVKVVKNKMAPPFKQVSFDILYGSGVSREGEIIDLGVREGLIEKAGAWYSYKGERIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQN 334
           +N + FL+E+ +IA+ IE+ +R+ 
Sbjct: 303 DNVRQFLKEHRDIAQEIEAHIREK 326


>gi|237908825|gb|ACR33788.1| RecA [Burkholderia caribensis]
          Length = 319

 Score =  472 bits (1215), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 221/319 (69%), Positives = 279/319 (87%), Gaps = 1/319 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AAL+QI++ +GKG++M+LG QG   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPES
Sbjct: 2   AALAQIEKQFGKGSVMRLG-QGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL L  +A+ QK GGT AF+DAEHALD  YA+KLGV++ +LL+SQPDTGEQALEI 
Sbjct: 61  SGKTTLTLQVVAEMQKVGGTAAFIDAEHALDIQYAQKLGVNVSDLLVSQPDTGEQALEIA 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C++
Sbjct: 121 DALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLV 180

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKN
Sbjct: 181 IFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKN 240

Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317
           K++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G R+GQG++N++ FL
Sbjct: 241 KVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGDRIGQGKDNAREFL 300

Query: 318 RENIEIAENIESLLRQNAG 336
           REN +IA  IE+ +R++ G
Sbjct: 301 RENPDIAREIENRIRESLG 319


>gi|167579956|ref|ZP_02372830.1| recombinase A [Burkholderia thailandensis TXDOH]
          Length = 356

 Score =  472 bits (1215), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/329 (69%), Positives = 285/329 (86%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 13  EKSKALAAALAQIEKQFGKGSIMRLGD-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 72  EIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT SI
Sbjct: 132 EQALEIVDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTGSI 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 252 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 311

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+ A
Sbjct: 312 DNAREFLRENPEIAREIENRIRESLGVAA 340


>gi|187478799|ref|YP_786823.1| recombinase A [Bordetella avium 197N]
 gi|123738620|sp|Q2KYE8|RECA_BORA1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|115423385|emb|CAJ49919.1| RecA protein (recombinase A) [Bordetella avium 197N]
          Length = 353

 Score =  472 bits (1215), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 224/318 (70%), Positives = 274/318 (86%), Gaps = 1/318 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+ G    +   I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 22  QIEKQFGKGSIMRYGDN-EVEHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 80

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGTCAFVDAEHALD  YA KLGV+L +LLISQPDTGEQALEITD LV
Sbjct: 81  TLTLQVIAEMQKVGGTCAFVDAEHALDVQYASKLGVNLGDLLISQPDTGEQALEITDALV 140

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG+VD+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT++I R+ C+++FIN
Sbjct: 141 RSGSVDLIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTATIKRTNCMVIFIN 200

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK+A 
Sbjct: 201 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKGDEVVGNETRVKVVKNKVAP 260

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PFKQ EFDIMYG GIS  GE+IDLGV A++++KSGAW+S+ G R+GQG++N + +L+EN 
Sbjct: 261 PFKQAEFDIMYGAGISREGEIIDLGVAANVIEKSGAWYSYSGNRIGQGKDNVREYLKENR 320

Query: 322 EIAENIESLLRQNAGLVA 339
            +A  IE+ +R N G+VA
Sbjct: 321 AMAIEIENKIRDNQGIVA 338


>gi|152980318|ref|YP_001354551.1| recombinase A [Janthinobacterium sp. Marseille]
 gi|166220652|sp|A6T204|RECA_JANMA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|151280395|gb|ABR88805.1| RecA recombination protein [Janthinobacterium sp. Marseille]
          Length = 367

 Score =  472 bits (1215), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 228/337 (67%), Positives = 287/337 (85%), Gaps = 1/337 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD +K     DKSKAL AAL+QI++ +GKG++M++   G++ E ++VVS+GSLGLDIALG
Sbjct: 1   MDDKKNAPSSDKSKALAAALAQIEKQFGKGSVMRM-EDGAVVEEVQVVSTGSLGLDIALG 59

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG P+GR+VEIYGPESSGKTTL L TIA+ QK GGTCAF+DAEHALD  YA+KLG++L 
Sbjct: 60  VGGLPRGRVVEIYGPESSGKTTLTLQTIAEMQKLGGTCAFIDAEHALDVTYAQKLGINLS 119

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +LLISQPDTGEQALEI D LVRSG VD+IVIDSVAALTPRAEIEGDMG+SLPG+QARLMS
Sbjct: 120 DLLISQPDTGEQALEICDALVRSGGVDLIVIDSVAALTPRAEIEGDMGDSLPGLQARLMS 179

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT SI+R+  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK
Sbjct: 180 QALRKLTGSINRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIK 239

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             D + GN+T+VKVVKNK+A PFK+  FDI+YGEG S  GE++DLG  A IV+KSGAW+S
Sbjct: 240 SGDEVIGNETKVKVVKNKIAPPFKEAHFDILYGEGTSREGEILDLGSDAKIVEKSGAWYS 299

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           + G+R+GQG++N++ +L+E  ++A  IE+ +R + G+
Sbjct: 300 YNGERIGQGKDNARNYLKERPDLAREIENKVRVSLGV 336


>gi|217969145|ref|YP_002354379.1| recombinase A [Thauera sp. MZ1T]
 gi|217506472|gb|ACK53483.1| recA protein [Thauera sp. MZ1T]
          Length = 345

 Score =  472 bits (1215), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 227/327 (69%), Positives = 280/327 (85%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K+KAL AALSQI++ +GKG+IM++G  GSI   I+ VS+GSLGLDIALG+GG P+GR+V
Sbjct: 4   NKAKALSAALSQIEKQFGKGSIMRMGD-GSIERDIQTVSTGSLGLDIALGLGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGVD+++LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVGYAEKLGVDIEDLLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG VDI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT++I
Sbjct: 123 EQALEIADMLVRSGGVDIVVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR G+IK  D + G++T
Sbjct: 183 KRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRTGTIKKGDEVVGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFK+  FDI+YGEGIS  GE+IDLGV+  IVDKSGAW+++KG ++GQG+
Sbjct: 243 RVKVVKNKVSPPFKEAHFDILYGEGISREGEIIDLGVEHKIVDKSGAWYAYKGDKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           +NS+ FLR N  +A  IE+ +R   GL
Sbjct: 303 DNSREFLRANPVLAREIENKVRVAVGL 329


>gi|170693424|ref|ZP_02884583.1| recA protein [Burkholderia graminis C4D1M]
 gi|170141579|gb|EDT09748.1| recA protein [Burkholderia graminis C4D1M]
          Length = 357

 Score =  472 bits (1215), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 227/329 (68%), Positives = 288/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG++M+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 14  EKSKALAAALAQIEKQFGKGSVMRLGA-GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVV 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 73  EIYGPESSGKTTLTLQVIAEMQKIGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPDTG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 133 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 193 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 252

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQG+
Sbjct: 253 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYSGERIGQGK 312

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN +IA  IE+ +R++ G+ A
Sbjct: 313 DNAREFLRENPDIAREIENRIRESLGVNA 341


>gi|30313406|gb|AAM55296.1| RecA [Burkholderia cepacia]
          Length = 331

 Score =  472 bits (1214), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 226/329 (68%), Positives = 283/329 (86%), Gaps = 3/329 (0%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           L+QI++ +GKG+IM++G      E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSG
Sbjct: 4   LAQIEKQFGKGSIMRMGD-AEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSG 62

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD 
Sbjct: 63  KTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDA 122

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++F
Sbjct: 123 LVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIF 182

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           INQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK+
Sbjct: 183 INQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKV 242

Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
           A PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLRE
Sbjct: 243 APPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRE 302

Query: 320 NIEIAENIESLLRQNAGLVA--DSLLQEP 346
           N EIA  IE+ +R++ G+VA  ++L  +P
Sbjct: 303 NPEIAREIENRIRESLGVVAMPEALATKP 331


>gi|30313398|gb|AAM55293.1| RecA [Burkholderia cepacia]
          Length = 347

 Score =  472 bits (1214), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKQFGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QA LMSQALRKLT +I
Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQALLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA 331


>gi|242133658|gb|ACS87940.1| RecA [Burkholderia cepacia]
          Length = 346

 Score =  472 bits (1214), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/329 (69%), Positives = 286/329 (86%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  I + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVITELQKIGGTAAFIDAEHALDIQYASKLGVNVPELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+V+
Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVS 330


>gi|163856367|ref|YP_001630665.1| recombinase A [Bordetella petrii DSM 12804]
 gi|229470327|sp|A9IKD2|RECA_BORPD RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|163260095|emb|CAP42396.1| RecA protein [Bordetella petrii]
          Length = 357

 Score =  472 bits (1214), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 223/318 (70%), Positives = 276/318 (86%), Gaps = 1/318 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+ G    +   I+VVS+GSLGLDIALG+GG P+GR++EIYGPESSGKT
Sbjct: 23  QIEKQFGKGSIMRYGDN-EVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKT 81

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGTCAFVDAEHALD  YA KLGV+L +LLISQPDTGEQALEITD LV
Sbjct: 82  TLTLQVIAEMQKIGGTCAFVDAEHALDVQYAAKLGVNLTDLLISQPDTGEQALEITDALV 141

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT++I R+ C+++FIN
Sbjct: 142 RSGSVDLIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFIN 201

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  + + GN+TRVKVVKNK++ 
Sbjct: 202 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKGEEVVGNETRVKVVKNKVSP 261

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PFKQ EFDIMYG GIS  GE+IDLGV+A +VDKSGAW+S+ G R+GQG++N + +L+E+ 
Sbjct: 262 PFKQAEFDIMYGAGISREGEIIDLGVQAGVVDKSGAWYSYSGTRIGQGKDNVREYLKEHP 321

Query: 322 EIAENIESLLRQNAGLVA 339
           E+A  IE+ +R+N G+V+
Sbjct: 322 ELAVEIENKVRENQGIVS 339


>gi|270342006|gb|ACZ74645.1| RecA [Burkholderia cepacia]
          Length = 347

 Score =  472 bits (1214), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/329 (69%), Positives = 286/329 (86%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IES +R++ G+ +
Sbjct: 302 DNAREFLRENPEIAREIESRIRESLGVAS 330


>gi|116119164|gb|ABJ74752.1| RecA [Burkholderia sp. M317]
          Length = 347

 Score =  472 bits (1214), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/329 (69%), Positives = 286/329 (86%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GS GLDIALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSPGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+V+
Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVS 331


>gi|254575562|gb|ACT68295.1| RecA [Burkholderia cepacia]
          Length = 347

 Score =  472 bits (1214), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNAL+FYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALRFYSSVRLDIRRIGSIKKNDEVIGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+ A
Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVAA 330


>gi|77359646|ref|YP_339221.1| RecA protein (recombinase A) [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874557|emb|CAI85778.1| RecA protein (Recombinase A) [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 347

 Score =  471 bits (1213), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 234/352 (66%), Positives = 285/352 (80%), Gaps = 11/352 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AALSQI+R +GKG+IM+LG   ++   IE VS+GSLG+DIALGIGG P GRIV
Sbjct: 4   NKQKALDAALSQIERQFGKGSIMKLGDNKAL--NIESVSTGSLGIDIALGIGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL L  IA++QK G TCAF+DAEHALD +YA+KLGV++  L +SQPDTG
Sbjct: 62  EVYGPESSGKTTLTLQVIAEAQKEGKTCAFIDAEHALDPVYAQKLGVNIDELFVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS AVD+++IDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT +I
Sbjct: 122 EQALEICDMLVRSSAVDVVIIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIRR+GS+K+ D + GN+T
Sbjct: 182 KRSNTLCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRIDIRRIGSVKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFKQ EF IMYGEGIS  GELIDLGVK  IV+K+GAW+S+ G ++GQG+
Sbjct: 242 RVKIVKNKVAPPFKQAEFIIMYGEGISKQGELIDLGVKHKIVEKAGAWYSYCGNKVGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK--DDTD 360
            NS  FL+EN EIA+ IE  LR+        LL +  I   D  DK  D+ D
Sbjct: 302 SNSIKFLKENPEIADEIEGKLRE-------MLLLKATIEPDDGEDKLGDEAD 346


>gi|53718415|ref|YP_107401.1| recombinase A [Burkholderia pseudomallei K96243]
 gi|53724718|ref|YP_102098.1| recombinase A [Burkholderia mallei ATCC 23344]
 gi|67639766|ref|ZP_00438601.1| protein RecA [Burkholderia mallei GB8 horse 4]
 gi|76809737|ref|YP_332384.1| recombinase A [Burkholderia pseudomallei 1710b]
 gi|121598818|ref|YP_993968.1| recombinase A [Burkholderia mallei SAVP1]
 gi|124385042|ref|YP_001028365.1| recombinase A [Burkholderia mallei NCTC 10229]
 gi|126441506|ref|YP_001057861.1| recombinase A [Burkholderia pseudomallei 668]
 gi|126448472|ref|YP_001079599.1| recombinase A [Burkholderia mallei NCTC 10247]
 gi|126452699|ref|YP_001065095.1| recombinase A [Burkholderia pseudomallei 1106a]
 gi|166998886|ref|ZP_02264738.1| recA protein [Burkholderia mallei PRL-20]
 gi|167718276|ref|ZP_02401512.1| recombinase A [Burkholderia pseudomallei DM98]
 gi|167737323|ref|ZP_02410097.1| recombinase A [Burkholderia pseudomallei 14]
 gi|167814447|ref|ZP_02446127.1| recombinase A [Burkholderia pseudomallei 91]
 gi|167822913|ref|ZP_02454384.1| recombinase A [Burkholderia pseudomallei 9]
 gi|167844480|ref|ZP_02469988.1| recombinase A [Burkholderia pseudomallei B7210]
 gi|167893005|ref|ZP_02480407.1| recombinase A [Burkholderia pseudomallei 7894]
 gi|167901469|ref|ZP_02488674.1| recombinase A [Burkholderia pseudomallei NCTC 13177]
 gi|167909714|ref|ZP_02496805.1| recombinase A [Burkholderia pseudomallei 112]
 gi|167917736|ref|ZP_02504827.1| recombinase A [Burkholderia pseudomallei BCC215]
 gi|217419940|ref|ZP_03451446.1| RecA protein [Burkholderia pseudomallei 576]
 gi|226199408|ref|ZP_03794966.1| recA protein [Burkholderia pseudomallei Pakistan 9]
 gi|237811009|ref|YP_002895460.1| protein RecA [Burkholderia pseudomallei MSHR346]
 gi|242317165|ref|ZP_04816181.1| recA protein [Burkholderia pseudomallei 1106b]
 gi|254176888|ref|ZP_04883545.1| recA protein [Burkholderia mallei ATCC 10399]
 gi|254181635|ref|ZP_04888232.1| recA protein [Burkholderia pseudomallei 1655]
 gi|254187593|ref|ZP_04894105.1| recA protein [Burkholderia pseudomallei Pasteur 52237]
 gi|254196276|ref|ZP_04902700.1| recA protein [Burkholderia pseudomallei S13]
 gi|254203781|ref|ZP_04910141.1| recA protein [Burkholderia mallei FMH]
 gi|254208758|ref|ZP_04915106.1| recA protein [Burkholderia mallei JHU]
 gi|254260268|ref|ZP_04951322.1| recA protein [Burkholderia pseudomallei 1710a]
 gi|254296286|ref|ZP_04963743.1| recA protein [Burkholderia pseudomallei 406e]
 gi|254360185|ref|ZP_04976455.1| recA protein [Burkholderia mallei 2002721280]
 gi|59798167|sp|Q62MH0|RECA_BURMA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|59798209|sp|Q66X92|RECA_BURPS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|51594210|gb|AAU08168.1| RecA [Burkholderia pseudomallei]
 gi|52208829|emb|CAH34768.1| putative recombinase A [Burkholderia pseudomallei K96243]
 gi|52428141|gb|AAU48734.1| recA protein [Burkholderia mallei ATCC 23344]
 gi|76579190|gb|ABA48665.1| recA protein [Burkholderia pseudomallei 1710b]
 gi|121227628|gb|ABM50146.1| recA protein [Burkholderia mallei SAVP1]
 gi|124293062|gb|ABN02331.1| RecA protein [Burkholderia mallei NCTC 10229]
 gi|126220999|gb|ABN84505.1| RecA protein [Burkholderia pseudomallei 668]
 gi|126226341|gb|ABN89881.1| recA protein [Burkholderia pseudomallei 1106a]
 gi|126241342|gb|ABO04435.1| RecA protein [Burkholderia mallei NCTC 10247]
 gi|147745293|gb|EDK52373.1| recA protein [Burkholderia mallei FMH]
 gi|147750634|gb|EDK57703.1| recA protein [Burkholderia mallei JHU]
 gi|148029425|gb|EDK87330.1| recA protein [Burkholderia mallei 2002721280]
 gi|157805935|gb|EDO83105.1| recA protein [Burkholderia pseudomallei 406e]
 gi|157935273|gb|EDO90943.1| recA protein [Burkholderia pseudomallei Pasteur 52237]
 gi|160697929|gb|EDP87899.1| recA protein [Burkholderia mallei ATCC 10399]
 gi|169653019|gb|EDS85712.1| recA protein [Burkholderia pseudomallei S13]
 gi|184212173|gb|EDU09216.1| recA protein [Burkholderia pseudomallei 1655]
 gi|217397244|gb|EEC37260.1| RecA protein [Burkholderia pseudomallei 576]
 gi|225928484|gb|EEH24513.1| recA protein [Burkholderia pseudomallei Pakistan 9]
 gi|237506701|gb|ACQ99019.1| protein RecA [Burkholderia pseudomallei MSHR346]
 gi|238520364|gb|EEP83825.1| protein RecA [Burkholderia mallei GB8 horse 4]
 gi|242140404|gb|EES26806.1| recA protein [Burkholderia pseudomallei 1106b]
 gi|243064966|gb|EES47152.1| recA protein [Burkholderia mallei PRL-20]
 gi|254218957|gb|EET08341.1| recA protein [Burkholderia pseudomallei 1710a]
          Length = 356

 Score =  471 bits (1213), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/329 (69%), Positives = 285/329 (86%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 13  EKSKALAAALAQIEKQFGKGSIMRLGD-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 72  EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT +I
Sbjct: 132 EQALEIVDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTGTI 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 252 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYSGEKIGQGK 311

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+ A
Sbjct: 312 DNAREFLRENPEIAREIENRIRESLGVAA 340


>gi|307730901|ref|YP_003908125.1| recA protein [Burkholderia sp. CCGE1003]
 gi|307585436|gb|ADN58834.1| recA protein [Burkholderia sp. CCGE1003]
          Length = 357

 Score =  471 bits (1213), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 227/329 (68%), Positives = 288/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG++M+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 14  EKSKALAAALAQIEKQFGKGSVMRLGA-GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVV 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 73  EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 133 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 193 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 252

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQG+
Sbjct: 253 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQGK 312

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN +IA  IE+ +R++ G+ A
Sbjct: 313 DNAREFLRENPDIAREIENRIRESLGVNA 341


>gi|226953077|ref|ZP_03823541.1| recombinase A [Acinetobacter sp. ATCC 27244]
 gi|226836169|gb|EEH68552.1| recombinase A [Acinetobacter sp. ATCC 27244]
          Length = 347

 Score =  471 bits (1213), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 220/323 (68%), Positives = 272/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL+AALSQI++ +GK  +M+LG   +  + +E VS+GSL LDIALGIGG PKGRI+
Sbjct: 4   NKSKALQAALSQIEKQFGKNTVMRLGD--NTVQAVEAVSTGSLTLDIALGIGGLPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ L  IAQ QKTGGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD G
Sbjct: 62  EIYGPESSGKTTMTLQAIAQCQKTGGTCAFIDAEHALDPEYARKLGVDIDNLLVSQPDNG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T + 
Sbjct: 122 EQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNA 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+ D ITGN+T
Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEGDEITGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFK+  F IMYG+G +  GEL+DL V+  IV K+GAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKMAPPFKEAVFQIMYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N      EN ++A+ IE L+R+
Sbjct: 302 NNVIRHFEENPQMAQEIEKLIRE 324


>gi|88798291|ref|ZP_01113877.1| recombinase A [Reinekea sp. MED297]
 gi|88779067|gb|EAR10256.1| recombinase A [Reinekea sp. MED297]
          Length = 365

 Score =  471 bits (1213), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 221/322 (68%), Positives = 273/322 (84%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AALSQI+R +GKG++M++G Q  +   +  +S+GSLGLDIALGIGG PKGR+V
Sbjct: 9   NKEKALSAALSQIERQFGKGSVMRMGDQEKV--NVPAISTGSLGLDIALGIGGLPKGRVV 66

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK GGTCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 67  EIYGPESSGKTTLTLQVIAEAQKAGGTCAFVDAEHALDPNYAGKLGVNVDDLLVSQPDTG 126

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 127 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDHHVGLQARLMSQALRKITGNI 186

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR G+IKD D + G++T
Sbjct: 187 KTANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGTIKDGDEVVGSET 246

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF IMYG+GI   GE+IDLGVK  +V+KSGAW+S+KG ++GQG+
Sbjct: 247 RVKVVKNKVAPPFKQAEFQIMYGKGIYHLGEVIDLGVKIGLVEKSGAWYSYKGNKIGQGK 306

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N+  FL EN E+A+ IE+ +R
Sbjct: 307 ANAAKFLGENPEMAQEIEAAIR 328


>gi|29654363|ref|NP_820055.1| recombinase A [Coxiella burnetii RSA 493]
 gi|154707523|ref|YP_001424368.1| recombinase A [Coxiella burnetii Dugway 5J108-111]
 gi|161830332|ref|YP_001596675.1| recombinase A [Coxiella burnetii RSA 331]
 gi|165918533|ref|ZP_02218619.1| protein RecA [Coxiella burnetii RSA 334]
 gi|212212529|ref|YP_002303465.1| recombinase A [Coxiella burnetii CbuG_Q212]
 gi|37537929|sp|Q83CQ4|RECA_COXBU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|29541630|gb|AAO90569.1| RecA [Coxiella burnetii RSA 493]
 gi|154356809|gb|ABS78271.1| RecA [Coxiella burnetii Dugway 5J108-111]
 gi|161762199|gb|ABX77841.1| protein RecA [Coxiella burnetii RSA 331]
 gi|165917779|gb|EDR36383.1| protein RecA [Coxiella burnetii RSA 334]
 gi|212010939|gb|ACJ18320.1| RecA [Coxiella burnetii CbuG_Q212]
          Length = 343

 Score =  471 bits (1213), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/323 (70%), Positives = 282/323 (87%), Gaps = 1/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++S AL AALSQI+R +GKG++M+LG  G I + I+V+S+GSLGLDIALG+GG P+GRI+
Sbjct: 3   NRSNALNAALSQIERQFGKGSVMRLGDPGLIPD-IDVISTGSLGLDIALGVGGLPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPE+SGKTTLAL TIA  Q+ GGT AFVDAEHALD+IYA KLGV +++LL+SQPDTG
Sbjct: 62  EIYGPEASGKTTLALQTIASCQRMGGTAAFVDAEHALDAIYAGKLGVKVEDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSGAVD+IVIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT++I
Sbjct: 122 EQALEITDMLVRSGAVDLIVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK  + I G++T
Sbjct: 182 KKSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKKGEEILGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+QVEFDI+YG GIS   ELIDLGVK  +V+K+GAW+S+ G+R+GQG+
Sbjct: 242 RVKVVKNKVAPPFRQVEFDILYGLGISRESELIDLGVKNELVEKAGAWYSYNGERIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           EN + F  EN +IA  IE+ LR+
Sbjct: 302 ENVRQFFLENPKIAGEIETRLRE 324


>gi|116119156|gb|ABJ74748.1| RecA [Burkholderia sp. M292]
          Length = 347

 Score =  471 bits (1213), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/329 (69%), Positives = 286/329 (86%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ P ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVSPPSREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+V+
Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVS 331


>gi|295677592|ref|YP_003606116.1| recA protein [Burkholderia sp. CCGE1002]
 gi|295437435|gb|ADG16605.1| recA protein [Burkholderia sp. CCGE1002]
          Length = 358

 Score =  471 bits (1212), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 227/329 (68%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG++M+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 14  EKSKALAAALAQIEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 73  EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVADLLVSQPDTG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 133 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 193 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 252

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQG+
Sbjct: 253 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQGK 312

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN +IA  IE+ +R++ G+ A
Sbjct: 313 DNAREFLRENPDIAREIENRIRESLGVTA 341


>gi|209518322|ref|ZP_03267147.1| recA protein [Burkholderia sp. H160]
 gi|209501241|gb|EEA01272.1| recA protein [Burkholderia sp. H160]
          Length = 358

 Score =  471 bits (1212), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 227/329 (68%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG++M+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 14  EKSKALAAALAQIEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 73  EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVADLLVSQPDTG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 133 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 193 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 252

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQG+
Sbjct: 253 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQGK 312

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN +IA  IE+ +R++ G+ A
Sbjct: 313 DNAREFLRENPDIAREIENRIRESLGVTA 341


>gi|242133666|gb|ACS87944.1| RecA [Burkholderia cepacia]
          Length = 332

 Score =  471 bits (1212), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 1   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 59

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 60  EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 119

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG+VD+IVIDSVAAL P+AEIEG++G+SLPG+QARLMSQALRKLT +I
Sbjct: 120 EQALEITDALVRSGSVDMIVIDSVAALVPKAEIEGEVGDSLPGLQARLMSQALRKLTGTI 179

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 180 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 239

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 240 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 299

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 DNAREFLRENPEIAREIENRIRESLGVVA 328


>gi|157826209|ref|YP_001493929.1| recombinase A [Rickettsia akari str. Hartford]
 gi|157800167|gb|ABV75421.1| recombinase A [Rickettsia akari str. Hartford]
          Length = 362

 Score =  471 bits (1212), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/356 (64%), Positives = 289/356 (81%), Gaps = 11/356 (3%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K M+  DK +A+ AAL QI++ YGKG++M+LG + ++   IE VS+GSLGLDIALGIGG 
Sbjct: 18  KFMSNTDKERAIAAALVQIEKSYGKGSVMKLGQRPNV--DIEAVSTGSLGLDIALGIGGV 75

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA+KLGV++  L+I
Sbjct: 76  PKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELII 135

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEITD L+RSG +D+I+IDSVAAL P++EIEG+MG++    QARLMSQALR
Sbjct: 136 SQPDTGEQALEITDTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALR 195

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ 
Sbjct: 196 KLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEE 255

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + G+QTRVKVVKNK++ PFK  +FDIMYG GIS  GE+IDLGVK  IV+KSG+WFS+   
Sbjct: 256 VIGSQTRVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYNNV 315

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           R+GQGREN K +L+E+ +I+  IE ++R+ +  +         IN   D  +D+ D
Sbjct: 316 RIGQGRENVKQYLKEHPQISNEIEKIIREKSSKI---------ININLDQMEDEND 362


>gi|30141700|emb|CAD82859.1| RecA protein [Burkholderia graminis C4D1M]
          Length = 350

 Score =  471 bits (1212), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 227/329 (68%), Positives = 288/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG++M+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 12  EKSKALAAALAQIEKQFGKGSVMRLGA-GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVV 70

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 71  EIYGPESSGKTTLTLQVIAEMQKIGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPDTG 130

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 131 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 190

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 191 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 250

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQG+
Sbjct: 251 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYSGERIGQGK 310

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN +IA  IE+ +R++ G+ A
Sbjct: 311 DNAREFLRENPDIAREIENRIRESLGVNA 339


>gi|294650666|ref|ZP_06728020.1| recombination protein A [Acinetobacter haemolyticus ATCC 19194]
 gi|292823457|gb|EFF82306.1| recombination protein A [Acinetobacter haemolyticus ATCC 19194]
          Length = 347

 Score =  471 bits (1212), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 220/323 (68%), Positives = 272/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL+AALSQI++ +GK  +M+LG   +  + +E VS+GSL LDIALGIGG PKGRI+
Sbjct: 4   NKSKALQAALSQIEKQFGKNTVMRLGD--NTVQAVEAVSTGSLTLDIALGIGGLPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ L  IAQ QKTGGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD G
Sbjct: 62  EIYGPESSGKTTMTLQAIAQCQKTGGTCAFIDAEHALDPEYARKLGVDIDNLLVSQPDNG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T + 
Sbjct: 122 EQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNA 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+ D ITGN+T
Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEGDEITGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFK+  F IMYG+G +  GEL+DL V+  IV K+GAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKMAPPFKEAVFQIMYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N      EN ++A+ IE L+R+
Sbjct: 302 NNVIRHFEENPQMAQEIEKLIRE 324


>gi|134095796|ref|YP_001100871.1| recombinase A [Herminiimonas arsenicoxydans]
 gi|166220651|sp|A4G8B3|RECA_HERAR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|133739699|emb|CAL62750.1| Protein RecA (Recombinase A) [Herminiimonas arsenicoxydans]
          Length = 367

 Score =  471 bits (1212), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 227/337 (67%), Positives = 286/337 (84%), Gaps = 1/337 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD +K     DKSKAL AAL+QI++ +GKG++M++   G++ E ++VVS+GSLGLD+ALG
Sbjct: 1   MDDKKNAPSSDKSKALAAALAQIEKQFGKGSVMRM-EDGAVVEEVQVVSTGSLGLDLALG 59

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG P+GR+VEIYGPESSGKTTL L TIA+ QK GGTCAF+DAEHALD  YA+KLG++L 
Sbjct: 60  VGGLPRGRVVEIYGPESSGKTTLTLQTIAEMQKLGGTCAFIDAEHALDVTYAQKLGINLS 119

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LLISQPDTGEQALEI D LVRSG VD+IVIDSVAALTPRAEIEGDMG+SLPG+QARLMS
Sbjct: 120 ELLISQPDTGEQALEICDALVRSGGVDLIVIDSVAALTPRAEIEGDMGDSLPGLQARLMS 179

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT SI+R+  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK
Sbjct: 180 QALRKLTGSINRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIK 239

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             D + GN+T+VKVVKNK+A PFK+  F+I+YGEG S  GE++DLG  A IV+KSGAW+S
Sbjct: 240 SGDEVIGNETKVKVVKNKIAPPFKEAHFEILYGEGTSREGEILDLGSDAKIVEKSGAWYS 299

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           + G+R+GQG++N++ +L+E  E+A  IE+ +R + G+
Sbjct: 300 YNGERIGQGKDNARNYLKERPELAREIENKVRASLGV 336


>gi|87122443|ref|ZP_01078323.1| RecA protein [Marinomonas sp. MED121]
 gi|86162236|gb|EAQ63521.1| RecA protein [Marinomonas sp. MED121]
          Length = 356

 Score =  471 bits (1212), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/347 (65%), Positives = 281/347 (80%), Gaps = 2/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AALSQI+R +GKGAIM++G +    E I  VS+GSLGLDIALGIGG P GR +
Sbjct: 10  NKKKALDAALSQIERQFGKGAIMKMGDKPR--EAIPSVSTGSLGLDIALGIGGLPLGRCI 67

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL L TIAQ+QK G TCAF+DAEHALD IYA KLGV+L  LL+SQPDTG
Sbjct: 68  ELYGPESSGKTTLTLSTIAQAQKQGYTCAFIDAEHALDPIYAEKLGVNLDELLLSQPDTG 127

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS AV++IVIDSVAALTP++EIEG+MG+S  G+QARLMSQALRKLT + 
Sbjct: 128 EQALEICDMLVRSNAVNLIVIDSVAALTPKSEIEGNMGDSHVGLQARLMSQALRKLTGAA 187

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GS+K  D + GN+T
Sbjct: 188 KNANCMIVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKQGDEVVGNET 247

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF+Q EF IMYG GI   GE+IDLGVK  +VDKSGAW+++KG ++GQG+
Sbjct: 248 RVKVVKNKVSPPFRQAEFQIMYGAGIYHMGEIIDLGVKQGLVDKSGAWYAYKGAKIGQGK 307

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
            N+  +L +NI+IA  IE+ +R+       +   E +  TK++  KD
Sbjct: 308 ANAAKYLEDNIDIANEIEAEIRKQLIQTTTNKEAEESKATKEEVQKD 354


>gi|83647897|ref|YP_436332.1| recombinase A [Hahella chejuensis KCTC 2396]
 gi|123739862|sp|Q2SBR7|RECA_HAHCH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|83635940|gb|ABC31907.1| recA protein [Hahella chejuensis KCTC 2396]
          Length = 345

 Score =  471 bits (1212), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 226/324 (69%), Positives = 273/324 (84%), Gaps = 2/324 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL AALSQI+R +GKGA+M++G Q    E I  VS+GSLGLDIALGIGG P GRIV
Sbjct: 4   NRKKALTAALSQIERQFGKGAVMRMGEQPR--EIIPSVSTGSLGLDIALGIGGLPYGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++Q+ G TCAFVDAEHALD IYA KLGV++  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAEAQRQGKTCAFVDAEHALDPIYAEKLGVNIDQLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGAVD+I+IDSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT S+
Sbjct: 122 EQALEIADMLVRSGAVDVIIIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGSV 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRRVGS+K+ + + GN+T
Sbjct: 182 KQANCLMIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGSVKEGEEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ +F IMYG GI   GE+IDLGVK   VDKSGAW+S+KG ++GQG+
Sbjct: 242 RVKVVKNKVSPPFKQADFQIMYGRGIYRTGEIIDLGVKEGFVDKSGAWYSYKGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQN 334
            NS  +L E+ EIA  IE+ +R+ 
Sbjct: 302 ANSSRYLEEHPEIAVEIETAIREK 325


>gi|83721519|ref|YP_441199.1| recombinase A [Burkholderia thailandensis E264]
 gi|167621349|ref|ZP_02389980.1| recombinase A [Burkholderia thailandensis Bt4]
 gi|257140135|ref|ZP_05588397.1| recombinase A [Burkholderia thailandensis E264]
 gi|83655344|gb|ABC39407.1| recA protein [Burkholderia thailandensis E264]
          Length = 356

 Score =  471 bits (1212), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 228/327 (69%), Positives = 284/327 (86%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 13  EKSKALAAALAQIEKQFGKGSIMRLGD-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 72  EIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT SI
Sbjct: 132 EQALEIVDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTGSI 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 252 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 311

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           +N++ FLREN EIA  IE+ +R++ G+
Sbjct: 312 DNAREFLRENPEIAREIENRIRESLGV 338


>gi|311105063|ref|YP_003977916.1| protein RecA [Achromobacter xylosoxidans A8]
 gi|310759752|gb|ADP15201.1| protein RecA [Achromobacter xylosoxidans A8]
          Length = 354

 Score =  471 bits (1212), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 222/318 (69%), Positives = 275/318 (86%), Gaps = 1/318 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+ G    +   I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 23  QIEKQFGKGSIMRYGDN-DVSHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 81

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  +A+ QK GGTCAFVDAEHALD  YA KLGV+L +LLISQPDTGEQALEITD LV
Sbjct: 82  TLTLQVVAEMQKLGGTCAFVDAEHALDVQYASKLGVNLADLLISQPDTGEQALEITDALV 141

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT++I ++ C+++FIN
Sbjct: 142 RSGSVDLIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFIN 201

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A 
Sbjct: 202 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKGDEVVGNETRVKVVKNKVAP 261

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PFKQ EFDIMYG GIS  GE+IDLGV A++VDKSGAW+S+ G R+GQG++N + +L+E+ 
Sbjct: 262 PFKQAEFDIMYGAGISREGEIIDLGVAANVVDKSGAWYSYNGNRIGQGKDNVREYLKEHK 321

Query: 322 EIAENIESLLRQNAGLVA 339
            +A  IE+ +R+N G+V+
Sbjct: 322 ALAIEIENRVRENQGIVS 339


>gi|30141696|emb|CAD82856.1| RecA protein [Burkholderia fungorum]
          Length = 348

 Score =  471 bits (1212), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 227/329 (68%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG++M+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 10  EKSKALAAALAQIEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 68

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 69  EIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTG 128

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 129 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 188

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 189 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 248

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQG+
Sbjct: 249 RVKVVKNKVAPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQGK 308

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN +IA  IE+ +R++ G+ A
Sbjct: 309 DNAREFLRENPDIAREIENRIRESLGVNA 337


>gi|150171058|emb|CAO01512.1| DNA recombination protein [Burkholderia arboris]
          Length = 336

 Score =  471 bits (1211), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 224/316 (70%), Positives = 275/316 (87%), Gaps = 1/316 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIY
Sbjct: 1   KALAAALAQIEKQFGKGSIMRMGD-GDATENIQVVSTGSLGLDIALGVGGLPRGRVVEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQA
Sbjct: 60  GPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+ LPG+QARLMSQALRKLT +I R+
Sbjct: 120 LEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDXLPGLQARLMSQALRKLTGTIKRT 179

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVK
Sbjct: 180 NCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVK 239

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N+
Sbjct: 240 VVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNA 299

Query: 314 KIFLRENIEIAENIES 329
           + FLREN EIA  IE+
Sbjct: 300 REFLRENPEIAREIEN 315


>gi|157326981|gb|ABV44603.1| RecA [Burkholderia multivorans]
          Length = 321

 Score =  471 bits (1211), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 223/320 (69%), Positives = 279/320 (87%), Gaps = 1/320 (0%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           L+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSG
Sbjct: 1   LAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSG 59

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD 
Sbjct: 60  KTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDA 119

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++F
Sbjct: 120 LVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIF 179

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           INQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK+
Sbjct: 180 INQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKV 239

Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
           + PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLRE
Sbjct: 240 SPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRE 299

Query: 320 NIEIAENIESLLRQNAGLVA 339
           N EIA  IE+ +R++ G+ A
Sbjct: 300 NPEIAREIENRIRESLGVAA 319


>gi|292491237|ref|YP_003526676.1| recA protein [Nitrosococcus halophilus Nc4]
 gi|291579832|gb|ADE14289.1| recA protein [Nitrosococcus halophilus Nc4]
          Length = 342

 Score =  471 bits (1211), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 221/323 (68%), Positives = 281/323 (86%), Gaps = 1/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL AALSQI++ +GKGA+M+LG   ++  G+EV+S+GSLGLDIALG+GG P+GR+V
Sbjct: 4   NRKKALGAALSQIEKQFGKGAVMRLGDANTV-RGVEVISTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPE+SGKTTLAL  +A++QK GGT AFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 63  EIFGPEASGKTTLALQVVAEAQKVGGTAAFVDAEHALDPQYAEKLGVNVDDLLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGAVD++VIDSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 123 EQALEIADMLVRSGAVDVVVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRRVGS+K  + I GN+T
Sbjct: 183 KRSNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGSLKKGEEIVGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFKQ+ FDI+YG G+S  GE+IDLGV+  +V K+GAW+S+ G R+GQGR
Sbjct: 243 RVKIVKNKVAPPFKQISFDILYGSGVSREGEIIDLGVQEGLVQKTGAWYSYNGDRIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           +N + FL+E+ E+A+ IE+ +R+
Sbjct: 303 DNVRQFLKEHQELAQGIEASIRE 325


>gi|116119178|gb|ABJ74759.1| RecA [Burkholderia sp. R460]
          Length = 347

 Score =  471 bits (1211), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/329 (69%), Positives = 286/329 (86%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVR G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDALVRLGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA 331


>gi|30524996|emb|CAD70707.1| RecA protein [Burkholderia fungorum]
          Length = 348

 Score =  471 bits (1211), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 227/329 (68%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG++M+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 10  EKSKALAAALAQIEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 68

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 69  EIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTG 128

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 129 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 188

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 189 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 248

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQG+
Sbjct: 249 RVKVVKNKVAPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQGK 308

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN +IA  IE+ +R++ G+ A
Sbjct: 309 DNAREFLRENPDIAREIENRIRESLGVNA 337


>gi|148887239|emb|CAM12786.1| recombinase A [Ochrobactrum sp. PR 17]
          Length = 268

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 220/265 (83%), Positives = 248/265 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GSL LDIALG+GG PKGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAE
Sbjct: 4   IETVSTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIE
Sbjct: 64  HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+SLPG+QARLMSQALRKLT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALK
Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALK 183

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR+GSIK++D + GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+D
Sbjct: 184 FYASVRLDIRRIGSIKERDEVVGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKMGELVD 243

Query: 285 LGVKASIVDKSGAWFSFKGQRLGQG 309
           LGVKA +V+KSGAWFS+  QRLGQG
Sbjct: 244 LGVKAGVVEKSGAWFSYNSQRLGQG 268


>gi|30141698|emb|CAD82857.1| RecA protein [Burkholderia fungorum]
          Length = 349

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 227/329 (68%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG++M+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 11  EKSKALAAALAQIEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 69

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 70  EIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTG 129

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 130 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 189

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 190 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 249

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQG+
Sbjct: 250 RVKVVKNKVAPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQGK 309

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN +IA  IE+ +R++ G+ A
Sbjct: 310 DNAREFLRENPDIAREIENRIRESLGVNA 338


>gi|116119176|gb|ABJ74758.1| RecA [Burkholderia sp. R456]
          Length = 348

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/329 (69%), Positives = 286/329 (86%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+ +
Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVAS 331


>gi|242133684|gb|ACS87953.1| RecA [Burkholderia cepacia]
          Length = 336

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 229/329 (69%), Positives = 286/329 (86%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ + KG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFDKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+V+
Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVS 330


>gi|88858311|ref|ZP_01132953.1| RecA protein (Recombinase A) [Pseudoalteromonas tunicata D2]
 gi|88819928|gb|EAR29741.1| RecA protein (Recombinase A) [Pseudoalteromonas tunicata D2]
          Length = 353

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 229/342 (66%), Positives = 281/342 (82%), Gaps = 9/342 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AALSQI+R +GKG+IM+LG   ++   IE +S+GSLG+DIALGIGG P GRIV
Sbjct: 4   NKEKALSAALSQIERQFGKGSIMKLGDSQAL--DIESISTGSLGIDIALGIGGLPAGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA++QK G TCAF+DAEHALD +YA KLGV++K+LL+SQPDTG
Sbjct: 62  EIFGPESSGKTTLTLQVIAEAQKKGKTCAFIDAEHALDPVYAEKLGVNIKDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGAVD+++IDSVAALTP+AEIEGDMG+   G+QARLMSQALRKLT +I
Sbjct: 122 EQALEICDMLVRSGAVDVVIIDSVAALTPKAEIEGDMGDHHVGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIRR GS+K+ D + GN+T
Sbjct: 182 KRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRIDIRRTGSVKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFKQ EF IMYGEGIS  GELIDLGV+   V+K+GAW+S++G ++GQG+
Sbjct: 242 RVKIVKNKVAPPFKQAEFIIMYGEGISKHGELIDLGVQHKFVEKAGAWYSYQGNKVGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
            NS  FL+EN  IA+ IE  LR       D LL +  I  +D
Sbjct: 302 SNSIKFLKENPAIADEIEKKLR-------DMLLLKATIKPED 336


>gi|30142194|emb|CAD83084.1| RecA protein [Burkholderia plantarii]
          Length = 335

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 225/324 (69%), Positives = 280/324 (86%), Gaps = 1/324 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL+QI++ +GKG+IM+LG      E I+VVS+GSLGLDIALG+GG P+GR+VEIYGP
Sbjct: 1   LAAALAQIEKQFGKGSIMKLGD-AEAKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALE
Sbjct: 60  ESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           ITD LVRSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARL SQALRKLT +I R+ C
Sbjct: 120 ITDALVRSGSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLWSQALRKLTGTIKRTNC 179

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVV
Sbjct: 180 LVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVV 239

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ 
Sbjct: 240 KNKVSPPFRESIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNARE 299

Query: 316 FLRENIEIAENIESLLRQNAGLVA 339
           FLREN +IA  IE+ +R++ G+VA
Sbjct: 300 FLRENPDIAREIENRIRESLGVVA 323


>gi|30141704|emb|CAD82858.2| RecA protein [Burkholderia fungorum]
          Length = 349

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 227/329 (68%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG++M+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 12  EKSKALAAALAQIEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 70

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 71  EIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTG 130

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 131 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 190

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 191 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 250

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQG+
Sbjct: 251 RVKVVKNKVAPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQGK 310

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN +IA  IE+ +R++ G+ A
Sbjct: 311 DNAREFLRENPDIAREIENRIRESLGVNA 339


>gi|30525000|emb|CAD70709.1| RecA protein [Burkholderia fungorum]
          Length = 345

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 227/329 (68%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG++M+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 7   EKSKALAAALAQIEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 65

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 66  EIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTG 125

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 126 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 185

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 186 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQG+
Sbjct: 246 RVKVVKNKVAPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQGK 305

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN +IA  IE+ +R++ G+ A
Sbjct: 306 DNAREFLRENPDIAREIENRIRESLGVNA 334


>gi|146278408|ref|YP_001168567.1| recombinase A [Rhodobacter sphaeroides ATCC 17025]
 gi|166220671|sp|A4WV48|RECA_RHOS5 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|145556649|gb|ABP71262.1| recA protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 357

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 237/337 (70%), Positives = 287/337 (85%), Gaps = 4/337 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           ++ R+EM   DK+KALE+AL+QI+R +GKG+IM+LG+   + E IE  S+GSLGLDIALG
Sbjct: 9   LNGRREM---DKAKALESALAQIERQFGKGSIMKLGANSPVME-IEATSTGSLGLDIALG 64

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG PKGRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YA+KLGV+L 
Sbjct: 65  IGGLPKGRIIEIYGPESSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPAYAKKLGVNLD 124

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LLISQPDTGEQALEI D LVRSGAV +IV+DSVAALTP++EIEGDMG+   G QARLMS
Sbjct: 125 ELLISQPDTGEQALEIVDTLVRSGAVSLIVVDSVAALTPKSEIEGDMGDMQMGSQARLMS 184

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKLT+SI RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G IK
Sbjct: 185 QAMRKLTASIGRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGGIK 244

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D+D++ GN T+VKVVKNK+A PF++VEFDIMYGEGIS  GEL+DLGVKA +V+KSG+W+S
Sbjct: 245 DRDNVIGNTTKVKVVKNKVAPPFREVEFDIMYGEGISKTGELVDLGVKAGVVEKSGSWYS 304

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           +  +R+GQGREN+K FLR N  +A +IE  +R + GL
Sbjct: 305 YGDERIGQGRENAKAFLRANPSVAGDIEDKIRASHGL 341


>gi|296535683|ref|ZP_06897857.1| recombinase A [Roseomonas cervicalis ATCC 49957]
 gi|296263980|gb|EFH10431.1| recombinase A [Roseomonas cervicalis ATCC 49957]
          Length = 347

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 243/354 (68%), Positives = 299/354 (84%), Gaps = 7/354 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KAL+AALSQI+R +GKG+IM++G++    E +EV+ +GSLGLD+ LGIGG P+GRI
Sbjct: 1   MDKNKALDAALSQIERAFGKGSIMRMGAKQQSDE-VEVIPTGSLGLDLGLGIGGLPRGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH IA++QK GGTCAFVDAEHALD  YARKLGVD+ NLLISQPD 
Sbjct: 60  VEIYGPESSGKTTLALHAIAEAQKRGGTCAFVDAEHALDPGYARKLGVDVDNLLISQPDA 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++V+DSVAAL PRAE+EG+MG+S  G+ ARLMSQALRKLT S
Sbjct: 120 GEQALEIADTLVRSGAVDVLVVDSVAALVPRAELEGEMGDSHVGLHARLMSQALRKLTGS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++RS  +L+F+NQ+R+KIGVMFG+PETTTGGNALKFY+S+RL+IRRVG IKD++ + GNQ
Sbjct: 180 VARSNTLLIFLNQIRLKIGVMFGNPETTTGGNALKFYASIRLEIRRVGQIKDREEVVGNQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PF+QVEFDIMYGEG+S  GEL+DLGVKA +V+KSGAWFS   QR+GQG
Sbjct: 240 TRVKVVKNKMAPPFRQVEFDIMYGEGVSKVGELLDLGVKAGVVEKSGAWFSCDSQRIGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           REN+K FLR+N  +A++IE  +R  AGLVA +++  P      D++ DD    E
Sbjct: 300 RENAKQFLRDNPAMADSIEQRIRAQAGLVASAMMVGP------DSESDDAAAAE 347


>gi|323527264|ref|YP_004229417.1| recA protein [Burkholderia sp. CCGE1001]
 gi|323384266|gb|ADX56357.1| recA protein [Burkholderia sp. CCGE1001]
          Length = 358

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 227/329 (68%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG++M+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 14  EKSKALAAALAQIEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 73  EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 133 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 193 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 252

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQG+
Sbjct: 253 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQGK 312

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN +IA  IE+ +R++ G+ A
Sbjct: 313 DNAREFLRENPDIAREIENRIRESLGVNA 341


>gi|157326949|gb|ABV44587.1| RecA [Burkholderia cenocepacia]
          Length = 319

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 222/319 (69%), Positives = 278/319 (87%), Gaps = 1/319 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           +QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGK
Sbjct: 1   AQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK 59

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD L
Sbjct: 60  TTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDAL 119

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FI
Sbjct: 120 VRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFI 179

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++
Sbjct: 180 NQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVS 239

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
            PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN
Sbjct: 240 PPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLREN 299

Query: 321 IEIAENIESLLRQNAGLVA 339
            EIA  IE+ +R++ G+V+
Sbjct: 300 PEIAREIENRIRESLGVVS 318


>gi|153206757|ref|ZP_01945598.1| protein RecA [Coxiella burnetii 'MSU Goat Q177']
 gi|212218394|ref|YP_002305181.1| recombinase A [Coxiella burnetii CbuK_Q154]
 gi|120577120|gb|EAX33744.1| protein RecA [Coxiella burnetii 'MSU Goat Q177']
 gi|212012656|gb|ACJ20036.1| RecA [Coxiella burnetii CbuK_Q154]
          Length = 343

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 229/323 (70%), Positives = 281/323 (86%), Gaps = 1/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++S AL AALSQI+R +GKG++M+LG  G I + I+V+S+GSLGLDIALG+GG P+GRI+
Sbjct: 3   NRSNALNAALSQIERQFGKGSVMRLGDPGLIPD-IDVISTGSLGLDIALGVGGLPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPE+SGKTTLAL TIA  Q+ GGT AFVDAEHALD+IYA KLGV +++LL+SQPDTG
Sbjct: 62  EIYGPEASGKTTLALQTIASCQRMGGTAAFVDAEHALDAIYAGKLGVKVEDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSGAVD+IVIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT++I
Sbjct: 122 EQALEITDMLVRSGAVDLIVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G IK  + I G++T
Sbjct: 182 KKSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGVIKKGEEILGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+QVEFDI+YG GIS   ELIDLGVK  +V+K+GAW+S+ G+R+GQG+
Sbjct: 242 RVKVVKNKVAPPFRQVEFDILYGLGISRESELIDLGVKNELVEKAGAWYSYNGERIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           EN + F  EN +IA  IE+ LR+
Sbjct: 302 ENVRQFFLENPKIAGEIETRLRE 324


>gi|157326927|gb|ABV44576.1| RecA [Burkholderia cenocepacia]
          Length = 328

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 223/318 (70%), Positives = 277/318 (87%), Gaps = 1/318 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LV
Sbjct: 60  TLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FIN
Sbjct: 120 RSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ 
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN 
Sbjct: 240 PFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENP 299

Query: 322 EIAENIESLLRQNAGLVA 339
           EIA  IE+ +R++ G+VA
Sbjct: 300 EIAREIENRIRESLGVVA 317


>gi|187925268|ref|YP_001896910.1| recombinase A [Burkholderia phytofirmans PsJN]
 gi|187716462|gb|ACD17686.1| recA protein [Burkholderia phytofirmans PsJN]
          Length = 358

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 227/329 (68%), Positives = 286/329 (86%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG++M+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 14  EKSKALAAALAQIEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LL+SQPDTG
Sbjct: 73  EIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNELLVSQPDTG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 133 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 193 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 252

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQG+
Sbjct: 253 RVKVVKNKVAPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYSGERIGQGK 312

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN +IA  IE+ +R++ G+ A
Sbjct: 313 DNAREFLRENPDIAREIENRIRESLGVNA 341


>gi|221639883|ref|YP_002526145.1| recombinase A [Rhodobacter sphaeroides KD131]
 gi|221160664|gb|ACM01644.1| Protein recA [Rhodobacter sphaeroides KD131]
          Length = 367

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 236/337 (70%), Positives = 289/337 (85%), Gaps = 4/337 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           ++ R+EM   DK+KALE+AL+QI+R +GKG+IM+LG+   + E IE  S+GSLGLDIALG
Sbjct: 19  LNGRREM---DKAKALESALAQIERQFGKGSIMKLGANSPVME-IEATSTGSLGLDIALG 74

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG PKGRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YA+KLGV+L 
Sbjct: 75  IGGLPKGRIIEIYGPESSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLD 134

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LLISQPDTGEQALEI D LVRSGAV++IV+DSVAALTP++EIEGDMG+   G QARLMS
Sbjct: 135 ELLISQPDTGEQALEIVDTLVRSGAVNLIVVDSVAALTPKSEIEGDMGDMQMGSQARLMS 194

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKLT+SI RS C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK
Sbjct: 195 QAMRKLTASIGRSNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIK 254

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D+D++ GN T+VKVVKNK+A PF++VEFDIMYGEGIS  GEL+DLGVKA +V+KSG+W+S
Sbjct: 255 DRDNVIGNTTKVKVVKNKVAPPFREVEFDIMYGEGISKTGELVDLGVKAGVVEKSGSWYS 314

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           +  +R+GQGREN+K FLR N  +A +IE  +R + GL
Sbjct: 315 YGDERIGQGRENAKAFLRANPTVAGDIEDRIRASHGL 351


>gi|120554998|ref|YP_959349.1| recombinase A [Marinobacter aquaeolei VT8]
 gi|166220655|sp|A1U2E3|RECA_MARAV RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|120324847|gb|ABM19162.1| recA protein [Marinobacter aquaeolei VT8]
 gi|302608138|emb|CBW44418.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Marinobacter hydrocarbonoclasticus]
          Length = 347

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 223/336 (66%), Positives = 275/336 (81%), Gaps = 9/336 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL AALSQI+R +GKGA+M++G Q    E I  VS+GSLGLD+ALGIGG P GRIV
Sbjct: 4   NRKKALGAALSQIERQFGKGAVMKMGDQPR--EAIPAVSTGSLGLDVALGIGGLPYGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD +YA KLGV++  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAEAQKQGKTCAFVDAEHALDPVYAEKLGVNVDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS AVD+I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT ++
Sbjct: 122 EQALEIADMLVRSNAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNV 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GS+KD D + GN+T
Sbjct: 182 KHANCLMVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKDGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF+Q EF IMYG+GI    E++D+GVK   VDKSGAW+++ G ++GQG+
Sbjct: 242 RVKVVKNKVSPPFRQAEFQIMYGKGIYHMAEVLDMGVKEGFVDKSGAWYAYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
            N+  FL EN++IA  IE+ +R       D L+ +P
Sbjct: 302 ANACKFLEENLDIANEIEAKVR-------DKLMPKP 330


>gi|237749552|ref|ZP_04580032.1| recA [Oxalobacter formigenes OXCC13]
 gi|229380914|gb|EEO31005.1| recA [Oxalobacter formigenes OXCC13]
          Length = 353

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 225/337 (66%), Positives = 284/337 (84%), Gaps = 1/337 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD  K  +  +K+KAL AAL+QI++ +GKG++M++ + G + E I  VS+GSLGLDIALG
Sbjct: 1   MDDNKNASNQEKNKALSAALAQIEKQFGKGSVMRM-APGVVVEEIPSVSTGSLGLDIALG 59

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG P+GR++EIYGPESSGKTTL L  IA+ QK GGTCAF+DAEHALD  YA+KLGV L+
Sbjct: 60  VGGLPRGRVIEIYGPESSGKTTLTLQVIAEMQKLGGTCAFIDAEHALDVGYAQKLGVHLQ 119

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +LLISQPDTGEQALEITD LVRSG VD+IVIDSVAALTP+AEIEGDMG+SLPG+QARLMS
Sbjct: 120 DLLISQPDTGEQALEITDALVRSGGVDLIVIDSVAALTPKAEIEGDMGDSLPGLQARLMS 179

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT SI+++   ++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR GSIK
Sbjct: 180 QALRKLTGSINKTNTSVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSIK 239

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             D + G++TRVKVVKNK A PFK+  FDI+YGEG S  GE++DLG +A IVDK+GAW+S
Sbjct: 240 SGDEVIGSETRVKVVKNKTAPPFKEAYFDILYGEGTSREGEILDLGSEAKIVDKAGAWYS 299

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           + G+++GQG++N++ +LR N ++A  IE+ +R + G+
Sbjct: 300 YNGEKIGQGKDNARNYLRANPKLAREIENKVRASYGV 336


>gi|257454120|ref|ZP_05619393.1| protein RecA [Enhydrobacter aerosaccus SK60]
 gi|257448448|gb|EEV23418.1| protein RecA [Enhydrobacter aerosaccus SK60]
          Length = 351

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 223/322 (69%), Positives = 273/322 (84%), Gaps = 1/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K+KAL AALSQI++ +GK  IM+LG + +    ++VVS+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKAKALTAALSQIEKQFGKNTIMRLGDESAKIN-VDVVSTGSLGLDIALGIGGLPKGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK GGTCAF+DAEHALD IYA+KLGVD+  LL++QPD G
Sbjct: 63  EIYGPESSGKTTLTLQAIAQCQKQGGTCAFIDAEHALDPIYAKKLGVDVDALLVTQPDNG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSGAVD+IV+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T + 
Sbjct: 123 EQALEITDMLVRSGAVDMIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNA 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C++VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++KD ++I G++T
Sbjct: 183 KRSNCMVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKDGENIVGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV+KNK+A PF+Q EFDIMYG G +  GE++DLGV    V KSGAW+S+   ++GQG+
Sbjct: 243 RVKVIKNKLAPPFRQAEFDIMYGTGTNHLGEVVDLGVDIDAVKKSGAWYSYNDSKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N+  FL EN +IA+ IE+ +R
Sbjct: 303 ANAIRFLEENPQIAQEIEAKVR 324


>gi|34484371|gb|AAP51732.1| RecA [Burkholderia sp. BC14]
          Length = 332

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/329 (69%), Positives = 286/329 (86%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+ +
Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVAS 330


>gi|157326959|gb|ABV44592.1| RecA [Burkholderia cenocepacia]
          Length = 319

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 222/318 (69%), Positives = 277/318 (87%), Gaps = 1/318 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 1   QIEKHFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LV
Sbjct: 60  TLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FIN
Sbjct: 120 RSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ 
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN 
Sbjct: 240 PFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENP 299

Query: 322 EIAENIESLLRQNAGLVA 339
           EIA  IE+ +R++ G+V+
Sbjct: 300 EIAREIENRIRESLGVVS 317


>gi|77464021|ref|YP_353525.1| recombinase A [Rhodobacter sphaeroides 2.4.1]
 gi|126462866|ref|YP_001043980.1| recombinase A [Rhodobacter sphaeroides ATCC 17029]
 gi|166220670|sp|A3PLJ2|RECA_RHOS1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|77388439|gb|ABA79624.1| Recombinase A, DNA recombination protein [Rhodobacter sphaeroides
           2.4.1]
 gi|126104530|gb|ABN77208.1| recA protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 357

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 236/337 (70%), Positives = 289/337 (85%), Gaps = 4/337 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           ++ R+EM   DK+KALE+AL+QI+R +GKG+IM+LG+   + E IE  S+GSLGLDIALG
Sbjct: 9   LNGRREM---DKAKALESALAQIERQFGKGSIMKLGANSPVME-IEATSTGSLGLDIALG 64

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG PKGRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YA+KLGV+L 
Sbjct: 65  IGGLPKGRIIEIYGPESSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLD 124

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LLISQPDTGEQALEI D LVRSGAV++IV+DSVAALTP++EIEGDMG+   G QARLMS
Sbjct: 125 ELLISQPDTGEQALEIVDTLVRSGAVNLIVVDSVAALTPKSEIEGDMGDMQMGSQARLMS 184

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKLT+SI RS C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK
Sbjct: 185 QAMRKLTASIGRSNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIK 244

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D+D++ GN T+VKVVKNK+A PF++VEFDIMYGEGIS  GEL+DLGVKA +V+KSG+W+S
Sbjct: 245 DRDNVIGNTTKVKVVKNKVAPPFREVEFDIMYGEGISKTGELVDLGVKAGVVEKSGSWYS 304

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           +  +R+GQGREN+K FLR N  +A +IE  +R + GL
Sbjct: 305 YGDERIGQGRENAKAFLRANPTVAGDIEDRIRASHGL 341


>gi|77164441|ref|YP_342966.1| DNA recombination protein, RecA [Nitrosococcus oceani ATCC 19707]
 gi|254433644|ref|ZP_05047152.1| protein RecA [Nitrosococcus oceani AFC27]
 gi|76882755|gb|ABA57436.1| RecA protein [Nitrosococcus oceani ATCC 19707]
 gi|207089977|gb|EDZ67248.1| protein RecA [Nitrosococcus oceani AFC27]
          Length = 342

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 221/324 (68%), Positives = 279/324 (86%), Gaps = 1/324 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL AALSQI++ +GKGA+M+LG   SI   +EV+S+GSLGLDIALG+GG P+GR+V
Sbjct: 4   NRKKALGAALSQIEKQFGKGAVMRLGD-ASIVREVEVISTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPE+SGKTTLAL   A++Q  GGT AFVDAEHALD  YA +LGV +++LL+SQPDTG
Sbjct: 63  EIFGPEASGKTTLALQVAAEAQALGGTAAFVDAEHALDPQYAERLGVSVEDLLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGAVD++VIDSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 123 EQALEIADMLVRSGAVDVVVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRRVG++K  D I GN+T
Sbjct: 183 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGALKKGDEIVGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFKQV FDI+YG G+S  GE+IDLGV+   ++K+GAW+S+ G+R+GQGR
Sbjct: 243 RVKVVKNKMAPPFKQVSFDILYGSGVSREGEIIDLGVREGFIEKAGAWYSYNGERIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQN 334
           +N + FL+E+ E+A+ IE+ +R+ 
Sbjct: 303 DNVRQFLKEHRELAQGIEAHIREK 326


>gi|256822657|ref|YP_003146620.1| recA protein [Kangiella koreensis DSM 16069]
 gi|256796196|gb|ACV26852.1| recA protein [Kangiella koreensis DSM 16069]
          Length = 346

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 229/322 (71%), Positives = 270/322 (83%), Gaps = 1/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL+QI+R +GKG+IM+LG   S   GI  +S+GSLGLDIALGIGG PKGR+V
Sbjct: 4   NKKKALGAALTQIERQFGKGSIMRLGDN-SAARGIGTISTGSLGLDIALGIGGLPKGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLAL  IA  QK GGT AFVDAEHALD  YA KLGV+L +L++SQPDTG
Sbjct: 63  EIYGPESSGKTTLALQAIASCQKDGGTAAFVDAEHALDPTYAEKLGVNLDDLIVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSGAVDI+V+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 123 EQALEITDMLVRSGAVDIVVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  + VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G IK  D I GN+T
Sbjct: 183 KRSNTLCVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQIKQGDEIVGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF I+YGEG S  GE++D GVK  +V+KSGAW+S+ G ++GQG+
Sbjct: 243 RVKVVKNKVAPPFKQAEFQILYGEGTSLEGEILDWGVKHDLVEKSGAWYSYNGNKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           +N   FL++N +I E IE  LR
Sbjct: 303 QNVIQFLKDNADIKEEIEGKLR 324


>gi|167645357|ref|YP_001683020.1| recombinase A [Caulobacter sp. K31]
 gi|189039593|sp|B0SZN2|RECA_CAUSK RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|167347787|gb|ABZ70522.1| recA protein [Caulobacter sp. K31]
          Length = 356

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 234/333 (70%), Positives = 288/333 (86%), Gaps = 2/333 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK +ALEAAL+QI R +GKG++M+LG +G +   +E +S+GSLGLDIALGIGG PKGR++
Sbjct: 16  DKQRALEAALAQIDRAFGKGSVMKLGEKGKVE--MESISTGSLGLDIALGIGGLPKGRVI 73

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH +A+ QK GGT AFVDAEHALD  YA KLGV+L NLL+SQPD G
Sbjct: 74  EIYGPESSGKTTLALHVVAECQKAGGTAAFVDAEHALDPGYAFKLGVNLDNLLVSQPDNG 133

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSGAVDI+VIDSVAALTP+AEIEG+MG+SLPG+QARLMSQALRKLT+SI
Sbjct: 134 EQALEITDTLVRSGAVDIVVIDSVAALTPKAEIEGEMGDSLPGLQARLMSQALRKLTASI 193

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++  I++FINQ+R KIGVM+GSPETTTGGNALKFY+SVRLDIRR GSIK++D I GN  
Sbjct: 194 NKANTIVIFINQIRHKIGVMYGSPETTTGGNALKFYASVRLDIRRTGSIKNRDEIVGNNV 253

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++VEFDIMYGEGIS  GE+IDLGVKA I+DK+G+WFS+  QR+GQGR
Sbjct: 254 RVKVVKNKVAPPFREVEFDIMYGEGISKLGEIIDLGVKAGIIDKAGSWFSYNSQRIGQGR 313

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343
           +N + FL+ N ++A  IE+ +R+++  + + LL
Sbjct: 314 DNVREFLKVNKDLAAEIEAAVRKSSQKIEEELL 346


>gi|308212820|gb|ADO21638.1| RecA [Burkholderia sp. HT16]
 gi|308212822|gb|ADO21639.1| RecA [Burkholderia sp. HT21]
 gi|308212824|gb|ADO21640.1| RecA [Burkholderia sp. HT80]
 gi|308212826|gb|ADO21641.1| RecA [Burkholderia sp. HT81]
 gi|308212828|gb|ADO21642.1| RecA [Burkholderia sp. HT83]
          Length = 325

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 222/319 (69%), Positives = 278/319 (87%), Gaps = 1/319 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           +QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGK
Sbjct: 1   AQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK 59

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD L
Sbjct: 60  TTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDAL 119

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FI
Sbjct: 120 VRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFI 179

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++
Sbjct: 180 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVS 239

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
            PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN
Sbjct: 240 PPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLREN 299

Query: 321 IEIAENIESLLRQNAGLVA 339
            EIA  IE+ +R++ G+VA
Sbjct: 300 PEIAREIENRIRESLGVVA 318


>gi|308212802|gb|ADO21629.1| RecA [Burkholderia arboris]
 gi|308212804|gb|ADO21630.1| RecA [Burkholderia arboris]
 gi|308212806|gb|ADO21631.1| RecA [Burkholderia arboris]
          Length = 319

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 223/318 (70%), Positives = 277/318 (87%), Gaps = 1/318 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LV
Sbjct: 60  TLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FIN
Sbjct: 120 RSGSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ 
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN 
Sbjct: 240 PFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENP 299

Query: 322 EIAENIESLLRQNAGLVA 339
           EIA  IE+ +R++ G+V+
Sbjct: 300 EIAREIENRIRESLGVVS 317


>gi|296803114|gb|ADH51633.1| DNA recombinase [Burkholderia stabilis]
          Length = 322

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 223/323 (69%), Positives = 279/323 (86%), Gaps = 1/323 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGN LKFY+SVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNELKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDL V+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLRVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGL 337
            FLREN EIA  IE+ +R++ G+
Sbjct: 300 EFLRENPEIAREIENRIRESLGV 322


>gi|70904874|gb|AAZ14016.1| RecA [Burkholderia cenocepacia]
          Length = 334

 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 229/329 (69%), Positives = 285/329 (86%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAKEDIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+ID GV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDFGVQAKIVDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+ A
Sbjct: 302 DNAREFLRENPEIALEIENRIRESLGVAA 330


>gi|289208783|ref|YP_003460849.1| recA protein [Thioalkalivibrio sp. K90mix]
 gi|288944414|gb|ADC72113.1| recA protein [Thioalkalivibrio sp. K90mix]
          Length = 348

 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 219/342 (64%), Positives = 283/342 (82%), Gaps = 8/342 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL AAL QI+R +GKGA+M++G Q ++   +  +S+GSL LDIALGIGG P+GR+V
Sbjct: 4   NRKKALTAALGQIERQFGKGAVMRMGDQQAV--DVPAISTGSLALDIALGIGGVPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  +A++QK GGT AFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVVAEAQKLGGTAAFVDAEHALDPTYAEKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGAVD++++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 122 EQALEIADMLVRSGAVDVVIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVR+DIRR+G+IK  D + GN+T
Sbjct: 182 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRMDIRRIGAIKKGDEVIGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PF++  F+I+YGEGIS  GE+I++GVK  ++DK+GAW+S+ G+R+GQG+
Sbjct: 242 RVKVVKNKMAPPFREAYFEILYGEGISRVGEIIEMGVKEGLIDKAGAWYSYNGERIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ------NAGLVADSLLQEP 346
           EN++ +L++N +IAE +E  LR+      N   V D  +  P
Sbjct: 302 ENARQYLKDNPQIAEEVEKTLRERLLPKRNKAAVEDEPVDAP 343


>gi|157326983|gb|ABV44604.1| RecA [Burkholderia multivorans]
          Length = 319

 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 222/318 (69%), Positives = 277/318 (87%), Gaps = 1/318 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LV
Sbjct: 60  TLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FIN
Sbjct: 120 RSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ 
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN 
Sbjct: 240 PFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENP 299

Query: 322 EIAENIESLLRQNAGLVA 339
           EIA  IE+ +R++ G+ A
Sbjct: 300 EIAREIENRIRESLGVAA 317


>gi|308212790|gb|ADO21623.1| RecA [Burkholderia arboris]
 gi|308212818|gb|ADO21637.1| RecA [Burkholderia arboris]
          Length = 323

 Score =  469 bits (1206), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 223/318 (70%), Positives = 277/318 (87%), Gaps = 1/318 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LV
Sbjct: 60  TLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FIN
Sbjct: 120 RSGSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ 
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN 
Sbjct: 240 PFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNARGFLRENP 299

Query: 322 EIAENIESLLRQNAGLVA 339
           EIA  IE+ +R++ G+V+
Sbjct: 300 EIAREIENRIRESLGVVS 317


>gi|70904872|gb|AAZ14015.1| RecA [Burkholderia multivorans]
          Length = 318

 Score =  469 bits (1206), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 222/318 (69%), Positives = 277/318 (87%), Gaps = 1/318 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LV
Sbjct: 60  TLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FIN
Sbjct: 120 RSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ 
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN 
Sbjct: 240 PFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENP 299

Query: 322 EIAENIESLLRQNAGLVA 339
           EIA  IE+ +R++ G+ A
Sbjct: 300 EIAREIENRIRESLGVAA 317


>gi|70904909|gb|AAZ14032.1| RecA [Burkholderia vietnamiensis]
          Length = 316

 Score =  469 bits (1206), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 222/317 (70%), Positives = 277/317 (87%), Gaps = 1/317 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESLLRQNAGLVA 339
           IA  IE+ +R++ G+VA
Sbjct: 300 IAREIENRIRESLGVVA 316


>gi|308212830|gb|ADO21643.1| RecA [Burkholderia sp. HT38]
 gi|308212832|gb|ADO21644.1| RecA [Burkholderia sp. HT58]
 gi|308212834|gb|ADO21645.1| RecA [Burkholderia sp. HT69]
          Length = 323

 Score =  469 bits (1206), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 222/318 (69%), Positives = 277/318 (87%), Gaps = 1/318 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LV
Sbjct: 60  TLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FIN
Sbjct: 120 RSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ 
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN 
Sbjct: 240 PFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENP 299

Query: 322 EIAENIESLLRQNAGLVA 339
           EIA  IE+ +R++ G+VA
Sbjct: 300 EIAREIENRIRESLGVVA 317


>gi|238028533|ref|YP_002912764.1| recombinase A [Burkholderia glumae BGR1]
 gi|237877727|gb|ACR30060.1| Recombinase A [Burkholderia glumae BGR1]
          Length = 360

 Score =  469 bits (1206), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/329 (69%), Positives = 285/329 (86%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM+LG      E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 13  EKSKALAAALAQIEKQFGKGSIMKLGD-AEAKEDIQVVSTGSLGLDIALGVGGLPRGRVV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 72  EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 132 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 252 RVKVVKNKVSPPFRESIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 311

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN +IA  IE+ +R++ G+ A
Sbjct: 312 DNAREFLRENPDIAREIENRIRESLGVAA 340


>gi|145629785|ref|ZP_01785580.1| recombinase A [Haemophilus influenzae 22.1-21]
 gi|145638484|ref|ZP_01794093.1| recombinase A [Haemophilus influenzae PittII]
 gi|144978024|gb|EDJ87808.1| recombinase A [Haemophilus influenzae 22.1-21]
 gi|145272079|gb|EDK11987.1| recombinase A [Haemophilus influenzae PittII]
 gi|309751787|gb|ADO81771.1| DNA recombination protein RecA [Haemophilus influenzae R2866]
          Length = 354

 Score =  468 bits (1205), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 225/330 (68%), Positives = 279/330 (84%), Gaps = 4/330 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSLGLD+ALGIGG P GRIV
Sbjct: 6   EKQKALAAALGQIEKQFGKGSIMKLGDTKTL--DVESISTGSLGLDVALGIGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IAQ+QK G TCAF+DAEHALD IYA KLGVD+K L +SQPD G
Sbjct: 64  EIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAEHALDPIYAAKLGVDVKELFVSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGA+D+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT  I
Sbjct: 124 EQALEICDALVRSGAIDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTGQI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C++VFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR GS+KD ++I GN+T
Sbjct: 184 KNANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKDGENIIGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PF+QV+F I+YGEGIS  GEL++LGVK  +V+KSGAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKLAAPFRQVDFQILYGEGISKAGELLELGVKHKLVEKSGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
            NS  +L ENIE ++ +E+ LR  A LVA+
Sbjct: 304 ANSMKWLNENIEKSDELEAHLR--AELVAN 331


>gi|157326933|gb|ABV44579.1| RecA [Burkholderia multivorans]
          Length = 322

 Score =  468 bits (1205), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 222/318 (69%), Positives = 277/318 (87%), Gaps = 1/318 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LV
Sbjct: 60  TLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FIN
Sbjct: 120 RSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ 
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN 
Sbjct: 240 PFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENP 299

Query: 322 EIAENIESLLRQNAGLVA 339
           EIA  IE+ +R++ G+ A
Sbjct: 300 EIAREIENRIRESLGVAA 317


>gi|254575570|gb|ACT68299.1| RecA [Burkholderia cepacia]
          Length = 347

 Score =  468 bits (1205), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 227/329 (68%), Positives = 285/329 (86%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGE IS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGESISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+ +
Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVAS 330


>gi|16272543|ref|NP_438757.1| recombinase A [Haemophilus influenzae Rd KW20]
 gi|68249193|ref|YP_248305.1| recombinase A [Haemophilus influenzae 86-028NP]
 gi|145631869|ref|ZP_01787626.1| recombinase A [Haemophilus influenzae R3021]
 gi|145633990|ref|ZP_01789708.1| recombinase A [Haemophilus influenzae 3655]
 gi|145635971|ref|ZP_01791655.1| recombinase A [Haemophilus influenzae PittAA]
 gi|145637982|ref|ZP_01793620.1| recombinase A [Haemophilus influenzae PittHH]
 gi|145640575|ref|ZP_01796159.1| recombinase A [Haemophilus influenzae R3021]
 gi|148826752|ref|YP_001291505.1| recombinase A [Haemophilus influenzae PittEE]
 gi|148827785|ref|YP_001292538.1| recombinase A [Haemophilus influenzae PittGG]
 gi|229845740|ref|ZP_04465860.1| recombinase A [Haemophilus influenzae 6P18H1]
 gi|229847527|ref|ZP_04467620.1| recombinase A [Haemophilus influenzae 7P49H1]
 gi|260581460|ref|ZP_05849272.1| recombination protein RecA [Haemophilus influenzae RdAW]
 gi|260583237|ref|ZP_05851014.1| recombinase A [Haemophilus influenzae NT127]
 gi|319775389|ref|YP_004137877.1| RecA [Haemophilus influenzae F3047]
 gi|319897800|ref|YP_004135997.1| reca [Haemophilus influenzae F3031]
 gi|329122586|ref|ZP_08251166.1| recombination protein A [Haemophilus aegyptius ATCC 11116]
 gi|1172885|sp|P43705|RECA_HAEIN RecName: Full=Protein RecA; AltName: Full=Recombinase 1; AltName:
           Full=Recombinase A
 gi|76363332|sp|Q4QMV2|RECA_HAEI8 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166220648|sp|A5UEC1|RECA_HAEIE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166220649|sp|A5UH99|RECA_HAEIG RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|305382|gb|AAC36817.1| recombinase [Haemophilus influenzae]
 gi|1573588|gb|AAC22257.1| recA protein (recA) [Haemophilus influenzae Rd KW20]
 gi|68057392|gb|AAX87645.1| RecA [Haemophilus influenzae 86-028NP]
 gi|144982472|gb|EDJ90035.1| recombinase A [Haemophilus influenzae R3021]
 gi|144985136|gb|EDJ91991.1| recombinase A [Haemophilus influenzae 3655]
 gi|145266780|gb|EDK06800.1| recombinase A [Haemophilus influenzae PittAA]
 gi|145268827|gb|EDK08792.1| recombinase A [Haemophilus influenzae PittHH]
 gi|145275161|gb|EDK15023.1| recombinase A [Haemophilus influenzae 22.4-21]
 gi|148716912|gb|ABQ99122.1| recombinase A [Haemophilus influenzae PittEE]
 gi|148719027|gb|ABR00155.1| recombinase A [Haemophilus influenzae PittGG]
 gi|229809553|gb|EEP45282.1| recombinase A [Haemophilus influenzae 7P49H1]
 gi|229811334|gb|EEP47043.1| recombinase A [Haemophilus influenzae 6P18H1]
 gi|260091906|gb|EEW75857.1| recombination protein RecA [Haemophilus influenzae RdAW]
 gi|260093690|gb|EEW77601.1| recombinase A [Haemophilus influenzae NT127]
 gi|301169315|emb|CBW28914.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Haemophilus influenzae 10810]
 gi|309973891|gb|ADO97092.1| DNA recombination protein RecA [Haemophilus influenzae R2846]
 gi|317433306|emb|CBY81681.1| RecA [Haemophilus influenzae F3031]
 gi|317449980|emb|CBY86192.1| RecA [Haemophilus influenzae F3047]
 gi|327472689|gb|EGF18117.1| recombination protein A [Haemophilus aegyptius ATCC 11116]
          Length = 354

 Score =  468 bits (1205), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 225/330 (68%), Positives = 279/330 (84%), Gaps = 4/330 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSLGLD+ALGIGG P GRIV
Sbjct: 6   EKQKALAAALGQIEKQFGKGSIMKLGDTKTL--DVESISTGSLGLDVALGIGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IAQ+QK G TCAF+DAEHALD IYA KLGVD+K L +SQPD G
Sbjct: 64  EIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAEHALDPIYAAKLGVDVKELFVSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGA+D+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT  I
Sbjct: 124 EQALEICDALVRSGAIDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTGQI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C++VFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR GS+KD ++I GN+T
Sbjct: 184 KNANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKDGENIIGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PF+QV+F I+YGEGIS  GEL++LGVK  +V+KSGAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKLAAPFRQVDFQILYGEGISKAGELLELGVKHKLVEKSGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
            NS  +L ENIE ++ +E+ LR  A LVA+
Sbjct: 304 ANSMKWLNENIEKSDELEARLR--AELVAN 331


>gi|270342004|gb|ACZ74644.1| RecA [Burkholderia cepacia]
          Length = 347

 Score =  468 bits (1205), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 227/329 (68%), Positives = 286/329 (86%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLRE+ EIA  IE+ +R++ G+ +
Sbjct: 302 DNAREFLRESPEIAREIENRIRESLGVAS 330


>gi|295688601|ref|YP_003592294.1| recombination protein RecA [Caulobacter segnis ATCC 21756]
 gi|295430504|gb|ADG09676.1| recA protein [Caulobacter segnis ATCC 21756]
          Length = 356

 Score =  468 bits (1205), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 233/333 (69%), Positives = 288/333 (86%), Gaps = 2/333 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK +ALEAAL+QI R +GKG++M+LG +G +   +E VS+GSLGLDIALGIGG PKGRI+
Sbjct: 16  DKQRALEAALAQIDRAFGKGSVMKLGEKGKVE--MESVSTGSLGLDIALGIGGLPKGRII 73

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTLALH +A+ QK GGT AFVDAEHALD  YA KLGV+L +LL+SQPD G
Sbjct: 74  EVYGPESSGKTTLALHVVAEVQKAGGTAAFVDAEHALDPSYAHKLGVNLDSLLVSQPDNG 133

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSGAVDI+VIDSVAALTP+AEIEG+MG+SLPG+QARLMSQALRKLT+SI
Sbjct: 134 EQALEITDTLVRSGAVDIVVIDSVAALTPKAEIEGEMGDSLPGLQARLMSQALRKLTASI 193

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++  I++FINQ+R KIGVM+GSPETTTGGNALKFY+SVRLDIRR GS+K +D I GN  
Sbjct: 194 NKANTIVIFINQIRHKIGVMYGSPETTTGGNALKFYASVRLDIRRTGSVKVRDEIIGNNV 253

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++VEFDIMYGEGIS  GE+IDLGVKA I++K+G+WFS+  QR+GQGR
Sbjct: 254 RVKVVKNKVAPPFREVEFDIMYGEGISKLGEVIDLGVKAGIIEKAGSWFSYGSQRIGQGR 313

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343
           +N + FL+ N +IA +IE+ +R+++  + + LL
Sbjct: 314 DNVREFLKNNPDIASSIEAAVRKSSQKIEEELL 346


>gi|285809808|gb|ADC36197.1| RecA [Burkholderia sp. GB-01]
          Length = 320

 Score =  468 bits (1204), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 222/318 (69%), Positives = 276/318 (86%), Gaps = 1/318 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRMGD-GEATEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LV
Sbjct: 60  TLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FIN
Sbjct: 120 RSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ 
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN 
Sbjct: 240 PFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENP 299

Query: 322 EIAENIESLLRQNAGLVA 339
           EIA  IE+ +R++ G+ A
Sbjct: 300 EIAREIENRIRESLGVAA 317


>gi|45825408|gb|AAS77553.1| RecA protein [Mesorhizobium sp. ICMP 14330]
          Length = 284

 Score =  468 bits (1204), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 222/281 (79%), Positives = 258/281 (91%), Gaps = 1/281 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 3   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ISRS  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+KD+D + GNQ
Sbjct: 182 ISRSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDRDEVVGNQ 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS 290
           TRVKVVKNK+A PFK VEFDIMYGEG+S  GEL+DLGVK +
Sbjct: 242 TRVKVVKNKLAPPFKVVEFDIMYGEGVSKTGELVDLGVKPA 282


>gi|224551699|gb|ACN54249.1| RecA [Burkholderia sp. MDIII-T536]
          Length = 319

 Score =  468 bits (1204), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 222/317 (70%), Positives = 276/317 (87%), Gaps = 1/317 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESLLRQNAGLVA 339
           IA  IE+ +R++ G+V+
Sbjct: 300 IAREIENRIRESLGVVS 316


>gi|262273677|ref|ZP_06051490.1| RecA protein [Grimontia hollisae CIP 101886]
 gi|262222092|gb|EEY73404.1| RecA protein [Grimontia hollisae CIP 101886]
          Length = 347

 Score =  468 bits (1204), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 227/344 (65%), Positives = 281/344 (81%), Gaps = 11/344 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   IE VS+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDDRTM--DIETVSTGSLSLDIALGAGGLPYGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAF+DAEHALD IYARKL VD+ NLL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAEAQKQGKTCAFIDAEHALDPIYARKLNVDIDNLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I+IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT++I
Sbjct: 122 EQALEIADALTRSGAVDVIIIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTANI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D + GN T
Sbjct: 182 KNSNTLMIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEVVGNDT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+ +GELIDLGVK  +V+K+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKIAAPFKQAEFQILYGEGINLYGELIDLGVKHKLVEKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ--EPAINTKD 352
            N+  FL+EN EIA+ ++  LR       D LLQ  +P    KD
Sbjct: 302 ANACKFLKENPEIAKELDKTLR-------DMLLQNGQPQAENKD 338


>gi|71062458|gb|AAZ21461.1| recA protein [Candidatus Pelagibacter ubique HTCC1062]
          Length = 358

 Score =  468 bits (1204), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 222/360 (61%), Positives = 289/360 (80%), Gaps = 16/360 (4%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           ++AA+SQI   +GKG++M+LG + ++   +E +S+GSL LD+ALGIGG PKGR++E+YGP
Sbjct: 1   MDAAMSQIIDNFGKGSVMKLGQRRAM--DVESISTGSLSLDVALGIGGLPKGRVIEVYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL  +A++QK GG CAF+DAEHALD IYA+KLGVD + LLISQPDTGEQALE
Sbjct: 59  ESSGKTTLALQVLAEAQKAGGICAFIDAEHALDPIYAKKLGVDTEELLISQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D LV+SG++ +IVIDSVAALTPRAEIEG+MG+   G+Q+RLMSQALRKLT SIS +  
Sbjct: 119 IADTLVKSGSISVIVIDSVAALTPRAEIEGEMGDHHVGLQSRLMSQALRKLTGSISSTNT 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           +++FINQ+RMKIGVMFGSPETT+GGNALKFYSSVR+DIRR+G+IK+ D I GN TRVKVV
Sbjct: 179 MMIFINQIRMKIGVMFGSPETTSGGNALKFYSSVRMDIRRIGAIKNGDEIIGNSTRVKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK+A PFK VEFD+MYG+GIS  GEL+DLG KA IV+K+GAW+++KG+++GQGREN+K 
Sbjct: 239 KNKVAPPFKVVEFDLMYGKGISKVGELVDLGSKADIVEKAGAWYAYKGEKIGQGRENAKT 298

Query: 316 FLRENIEIAENIESLLRQNAGLVADSL--------------LQEPAINTKDDADKDDTDN 361
           +L +N +IA  IE  +R+ AG++A  +              ++EP + TK++       N
Sbjct: 299 YLEQNPKIAAEIEMAIREKAGVIAKKIEGNPLDPEKAAKDQIEEPKLETKEEVTPPSKKN 358


>gi|224551713|gb|ACN54256.1| RecA [Burkholderia sp. MVP-C2-48]
          Length = 319

 Score =  468 bits (1203), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 221/317 (69%), Positives = 276/317 (87%), Gaps = 1/317 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESLLRQNAGLVA 339
           IA  IE+ +R++ G+V+
Sbjct: 300 IAREIENRIRESLGVVS 316


>gi|251793617|ref|YP_003008347.1| recombinase A [Aggregatibacter aphrophilus NJ8700]
 gi|247535014|gb|ACS98260.1| protein RecA [Aggregatibacter aphrophilus NJ8700]
          Length = 353

 Score =  468 bits (1203), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 226/353 (64%), Positives = 283/353 (80%), Gaps = 9/353 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALEAAL QI++ +GKGAIM+LG    +   IE +S+GS GLD+ALGIGG P GRIV
Sbjct: 6   EKQKALEAALGQIEKQFGKGAIMKLGDSQKL--DIEAISTGSFGLDLALGIGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA++QK G TCAF+DAEHALD IYA KLGVD+K LL+SQPD G
Sbjct: 64  EIFGPESSGKTTLTLSVIAEAQKNGKTCAFIDAEHALDPIYASKLGVDVKELLVSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVD++++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLTS I
Sbjct: 124 EQALEICDALVRSGAVDVVIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTSQI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+T
Sbjct: 184 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+QV+F I+YGEGIS   ELIDLGVK  ++ K+GAW++++ +++GQG+
Sbjct: 244 RVKVVKNKVAPPFRQVDFQILYGEGISKESELIDLGVKHKLISKAGAWYAYQNEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N+  +L++N E A+ IES LR       D LL  P      D+D +   N+E
Sbjct: 304 TNAMKWLKDNPEQAKIIESTLR-------DELLAHPESAITADSDNEAQGNIE 349


>gi|116119154|gb|ABJ74747.1| RecA [Burkholderia sp. M281]
          Length = 347

 Score =  468 bits (1203), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/329 (69%), Positives = 284/329 (86%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+G LGLDIALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGPLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+ VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDALVRSGSIDMNVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N+  FLREN EIA  IE+ +R++ G+V+
Sbjct: 303 DNACEFLRENPEIAREIENRIRESLGVVS 331


>gi|262376180|ref|ZP_06069410.1| recA protein [Acinetobacter lwoffii SH145]
 gi|262308781|gb|EEY89914.1| recA protein [Acinetobacter lwoffii SH145]
          Length = 347

 Score =  468 bits (1203), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 222/347 (63%), Positives = 282/347 (81%), Gaps = 9/347 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K+KAL AALSQI++ +GK  +M+LG   +  + +E VS+GSL LDIALGIGG PKGRIV
Sbjct: 4   NKNKALNAALSQIEKQFGKNTVMRLGD--NTVQAVEAVSTGSLTLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ L  IA+ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD G
Sbjct: 62  EIYGPESSGKTTMTLQAIAECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IV+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T + 
Sbjct: 122 EQALEIADMLVRSGAIDMIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNA 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G +K+ D I G++T
Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNKMA PFK+  F I+YG+G++  GELIDL V+  IV K+GAW+S++G ++GQG+
Sbjct: 242 KVKVVKNKMAPPFKEALFQILYGKGVNHLGELIDLAVQQEIVQKAGAWYSYQGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
            N+  +L E+ E+A+ IE L+R       D LL +  +  +DD+ ++
Sbjct: 302 NNTIRYLEEHKEMAQTIEKLIR-------DQLLTKAVVVEEDDSKEE 341


>gi|417636|sp|P32725|RECA_RHOS4 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|288349|emb|CAA51258.1| recA [Rhodobacter sphaeroides]
          Length = 343

 Score =  468 bits (1203), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 233/328 (71%), Positives = 284/328 (86%), Gaps = 1/328 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KALE+AL+QI+R +GKG+IM+LG+   + E IE  S+GSLGLDIALGIGG PKGRI
Sbjct: 1   MDKAKALESALAQIERQFGKGSIMKLGANSPVME-IEATSTGSLGLDIALGIGGLPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YA+KLGV+L  LLISQPDT
Sbjct: 60  IEIYGPESSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAV++IV+DSVAALTP++EIEGDMG+   G QARLMSQA+RKLT+S
Sbjct: 120 GEQALEIVDTLVRSGAVNLIVVDSVAALTPKSEIEGDMGDMQMGSQARLMSQAMRKLTAS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I RS C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD+D++ GN 
Sbjct: 180 IGRSNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDRDNVIGNT 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           T+VKVVKNK+A PF++VEFDIMYGEGIS  GEL+DLGVKA +V+KSG+W+S+  +R+GQG
Sbjct: 240 TKVKVVKNKVAPPFREVEFDIMYGEGISKTGELVDLGVKAGVVEKSGSWYSYGDERIGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           REN+K FLR N  +A +IE  +R + GL
Sbjct: 300 RENAKAFLRANPTVAGDIEDRIRASHGL 327


>gi|311693939|gb|ADP96812.1| recombinase A [marine bacterium HP15]
          Length = 348

 Score =  468 bits (1203), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 220/336 (65%), Positives = 274/336 (81%), Gaps = 9/336 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL AAL QI+R +GKGA+M++G Q    E I  VS+GSLGLD+ALGIGG P GRI 
Sbjct: 4   NRKKALSAALGQIERQFGKGAVMKMGDQPR--EAIPAVSTGSLGLDVALGIGGLPYGRIC 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD +YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAEAQKAGKTCAFVDAEHALDPVYAEKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS AVD+I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT ++
Sbjct: 122 EQALEIADMLVRSNAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNV 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++KD D + GN+T
Sbjct: 182 KHANCLMIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKDGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EF IMYG+GI    E++D+GVK   VDKSGAW+++ G ++GQG+
Sbjct: 242 RVKVVKNKVSPPFKQAEFQIMYGKGIYHMAEVLDMGVKEGFVDKSGAWYAYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
            N+  FL EN++IA  IE+ +R       D L+ +P
Sbjct: 302 ANACKFLEENMDIANEIEAKVR-------DKLMPKP 330


>gi|308048572|ref|YP_003912138.1| recA protein [Ferrimonas balearica DSM 9799]
 gi|307630762|gb|ADN75064.1| recA protein [Ferrimonas balearica DSM 9799]
          Length = 346

 Score =  468 bits (1203), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 222/318 (69%), Positives = 273/318 (85%), Gaps = 2/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI++ +GKG+IM+LG   ++   IE VS+GSLGLDIALGIGG P GRIV
Sbjct: 4   NKKRALSAALGQIEKQFGKGSIMRLGDATTL--DIESVSTGSLGLDIALGIGGLPYGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD +YA KLGV+++ LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAEAQKQGKTCAFVDAEHALDPVYAAKLGVNVEELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGAVD++++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 122 EQALEICDMLVRSGAVDVVIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  + VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++KD D + GN+T
Sbjct: 182 KRSNTLCVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKDGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EF I+YGEG S  GELIDLGV+  +++KSGAW+S++G+++GQG+
Sbjct: 242 RVKVVKNKVSPPFKQAEFQILYGEGTSKEGELIDLGVQQKLIEKSGAWYSYQGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIE 328
            NS  FL+EN+ IA  IE
Sbjct: 302 ANSIRFLKENVAIANEIE 319


>gi|159044192|ref|YP_001532986.1| recombinase A [Dinoroseobacter shibae DFL 12]
 gi|157911952|gb|ABV93385.1| bacterial DNA recombination [Dinoroseobacter shibae DFL 12]
          Length = 355

 Score =  468 bits (1203), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 235/327 (71%), Positives = 279/327 (85%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL++AL+QI+R +GKG+IM+LG+   + E IE  S+GS+GLDIALGIGG PKGRI+
Sbjct: 16  DKQKALDSALAQIERQFGKGSIMKLGADSPVAE-IEATSTGSIGLDIALGIGGIPKGRII 74

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD  YARKLGVDL  LLISQPDTG
Sbjct: 75  EIYGPESSGKTTLTLHCIAEEQKKGGVCAFVDAEHALDPQYARKLGVDLDELLISQPDTG 134

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ LVRSGAV ++V+DSVAALTP++E+EGDMG++  G QARLMSQA+RKLT +I
Sbjct: 135 EQALEITETLVRSGAVSMVVVDSVAALTPKSELEGDMGDAQVGAQARLMSQAMRKLTGAI 194

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SRS C ++FINQ+RMKIGVMFGSPETT+GGNALKFYSSVRLDIRR+GS+KD+D I GN T
Sbjct: 195 SRSNCTVIFINQIRMKIGVMFGSPETTSGGNALKFYSSVRLDIRRIGSVKDRDEIVGNTT 254

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PFKQVEFDI+YGEGIS  GELIDLGVKA +V KSG+WFS+  +R+GQGR
Sbjct: 255 KVKVVKNKVAPPFKQVEFDIIYGEGISKMGELIDLGVKAGVVQKSGSWFSYGDERIGQGR 314

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K +LR+N   A  +E  +R   GL
Sbjct: 315 ENAKQYLRDNTRTALELEDKIRAAHGL 341


>gi|224551673|gb|ACN54236.1| RecA [Burkholderia sp. FC65]
 gi|224551707|gb|ACN54253.1| RecA [Burkholderia cenocepacia]
          Length = 318

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/317 (69%), Positives = 276/317 (87%), Gaps = 1/317 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESLLRQNAGLVA 339
           IA  IE+ +R++ G+V+
Sbjct: 300 IAREIENRIRESLGVVS 316


>gi|157326955|gb|ABV44590.1| RecA [Burkholderia cenocepacia]
          Length = 327

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/317 (69%), Positives = 276/317 (87%), Gaps = 1/317 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 10  IEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 68

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 69  LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 128

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 129 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 188

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 189 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 248

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 249 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 308

Query: 323 IAENIESLLRQNAGLVA 339
           IA  IE+ +R++ G+V+
Sbjct: 309 IAREIENRIRESLGVVS 325


>gi|237747401|ref|ZP_04577881.1| recA protein [Oxalobacter formigenes HOxBLS]
 gi|229378752|gb|EEO28843.1| recA protein [Oxalobacter formigenes HOxBLS]
          Length = 353

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 224/337 (66%), Positives = 283/337 (83%), Gaps = 1/337 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD  K  +  +K+KAL  AL+QI++ +GKG++M++ + G + E I VVS+GSLGLDIALG
Sbjct: 1   MDDNKTASNPEKNKALAIALAQIEKQFGKGSVMRM-APGVVVEEIPVVSTGSLGLDIALG 59

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG P+GR++EIYGPESSGKTTL L  IA+ QK GGTCAF+DAEHALD  YA+KLGV L+
Sbjct: 60  VGGLPRGRVIEIYGPESSGKTTLTLQVIAEMQKLGGTCAFIDAEHALDVGYAQKLGVHLQ 119

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +LLISQPDTGEQALEITD LVRSGAVD+IVIDSVAALTP+AEIEGDMG+SLPG+QARLMS
Sbjct: 120 DLLISQPDTGEQALEITDALVRSGAVDLIVIDSVAALTPKAEIEGDMGDSLPGLQARLMS 179

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT SI+++   ++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR GSIK
Sbjct: 180 QALRKLTGSINKTNTSVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSIK 239

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             D + G++TRVKVVKNK A PFK+  FDI+YGEG S  GE++DLG  A IV+K+G+W+S
Sbjct: 240 SSDEVIGSETRVKVVKNKTAPPFKEAYFDILYGEGTSREGEILDLGADAKIVEKAGSWYS 299

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           + G+R+GQG++N++ +LR + ++A  IE+ +R   G+
Sbjct: 300 YNGERIGQGKDNARNYLRAHPKLAREIENKVRAAYGV 336


>gi|332140353|ref|YP_004426091.1| recombinase A [Alteromonas macleodii str. 'Deep ecotype']
 gi|238693255|sp|B4RVU1|RECA_ALTMD RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|327550375|gb|AEA97093.1| recombinase A [Alteromonas macleodii str. 'Deep ecotype']
          Length = 348

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 227/343 (66%), Positives = 282/343 (82%), Gaps = 3/343 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AA+ QI++ +GKGAIM+LG   ++   IE +S+GSL +DIALGIGG P GR+V
Sbjct: 4   NKSKALTAAVGQIEKQFGKGAIMRLGDNQAM--DIEAISTGSLTIDIALGIGGLPCGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD +YA KLGV++  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAEAQKNGKTCAFVDAEHALDPVYAEKLGVNIDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGAVD++++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT++I
Sbjct: 122 EQALEICDMLVRSGAVDVVIVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTANI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  + +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G++K+ D + GN+T
Sbjct: 182 KRSNTLCIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAVKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF I YGEGIS   ELIDLGVK  +VDK+GAW+S+KG R+GQG+
Sbjct: 242 RVKVVKNKVAPPFKQAEFMIRYGEGISKEAELIDLGVKQKLVDKAGAWYSYKGDRIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
            N   +L+E+ E A  IE+ +RQ   L++ ++  E A+   +D
Sbjct: 302 ANVMKYLKEHPETANEIETKIRQEL-LLSKTVKAEEALPQGED 343


>gi|331007036|ref|ZP_08330270.1| RecA protein [gamma proteobacterium IMCC1989]
 gi|330419163|gb|EGG93595.1| RecA protein [gamma proteobacterium IMCC1989]
          Length = 377

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/323 (68%), Positives = 273/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALEAALSQI+R +GKG +M++G +  +   I  +S+GSLGLDIALGIGG PKGRI 
Sbjct: 33  NKDKALEAALSQIERQFGKGTVMRMGDKELV--KIPAISTGSLGLDIALGIGGLPKGRIA 90

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK GGTCAF+DAEHALD +YA KLGV++ +L+ISQPDTG
Sbjct: 91  EIYGPESSGKTTLTLQVIAEAQKQGGTCAFIDAEHALDPVYAEKLGVNVDDLIISQPDTG 150

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALE+ DMLVRSGAVD+IVIDSVAALTP+AEIEGDMG+   G+QARLMSQALRK+T +I
Sbjct: 151 EQALEVADMLVRSGAVDVIVIDSVAALTPKAEIEGDMGDHHVGLQARLMSQALRKITGNI 210

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+ +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G++K+ + I G++T
Sbjct: 211 KNANCLCIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAVKEGEDIVGSET 270

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF IMYG GI+  GE+ID GVK  ++DK+GAW+S+KG+++GQG+
Sbjct: 271 RVKVVKNKVAPPFKQTEFQIMYGRGINRLGEVIDYGVKLELIDKAGAWYSYKGEKIGQGK 330

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N   FL+E  EIAE +E  +R+
Sbjct: 331 NNVIKFLQERPEIAEEVELAIRR 353


>gi|239787354|emb|CAX83831.1| Protein RecA [uncultured bacterium]
          Length = 353

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 218/326 (66%), Positives = 276/326 (84%), Gaps = 1/326 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+  +K KAL+AAL+QI+R +GKG++M+LG + +    IE +S+GSLGLD+ALGIGG PK
Sbjct: 1   MSTAEKVKALDAALAQIERNFGKGSVMRLGQKDTSMN-IESISTGSLGLDLALGIGGLPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL LH IA+ QK GG CAFVDAEHALD  YARKLGV  + L+ISQ
Sbjct: 60  GRIIEIFGPESSGKTTLTLHVIAECQKKGGICAFVDAEHALDPSYARKLGVKTEELIISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D LVRSGAVDIIVIDSVAAL P+AE+EGDMG+S  G+QARLMSQALRK+
Sbjct: 120 PDTGEQALEIADTLVRSGAVDIIVIDSVAALVPKAELEGDMGDSHMGLQARLMSQALRKI 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T SIS++ C+++FINQ+R KIG++FG+PETTTGGNALKFY+SVRLDIRR+G++KDK+ I 
Sbjct: 180 TGSISKTNCMVIFINQIRQKIGIVFGNPETTTGGNALKFYASVRLDIRRIGAVKDKEEIV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GNQTRVKVVKNKMA PF+ VEFD+ YG GIS  GE+ID+GV   +++KSG+W+S+K  ++
Sbjct: 240 GNQTRVKVVKNKMAPPFRTVEFDVSYGSGISKTGEIIDMGVNVGLIEKSGSWYSYKNNKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332
           GQGRE +K +L+E+ ++A  +E  +R
Sbjct: 300 GQGREVAKTYLKEHPDVARELEQQIR 325


>gi|296837413|gb|ADH59565.1| DNA recombinase [Burkholderia lata]
          Length = 317

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/316 (69%), Positives = 275/316 (87%), Gaps = 1/316 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI
Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299

Query: 324 AENIESLLRQNAGLVA 339
           A  IE+ +R++ G+VA
Sbjct: 300 AREIENRIRESLGVVA 315


>gi|296837381|gb|ADH59549.1| DNA recombinase [Burkholderia contaminans]
          Length = 318

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/316 (69%), Positives = 275/316 (87%), Gaps = 1/316 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESLLRQNAGLV 338
           IA  IE+ +R++ G+V
Sbjct: 300 IAREIENRIRESLGVV 315


>gi|157326977|gb|ABV44601.1| RecA [Burkholderia multivorans]
          Length = 315

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/316 (69%), Positives = 276/316 (87%), Gaps = 1/316 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           +QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGK
Sbjct: 1   AQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK 59

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD L
Sbjct: 60  TTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDAL 119

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FI
Sbjct: 120 VRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFI 179

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++
Sbjct: 180 NQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVS 239

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
            PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN
Sbjct: 240 PPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLREN 299

Query: 321 IEIAENIESLLRQNAG 336
            EIA  IE+ +R++ G
Sbjct: 300 PEIAREIENRIRESLG 315


>gi|296837391|gb|ADH59554.1| DNA recombinase [Burkholderia arboris]
          Length = 319

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/317 (69%), Positives = 276/317 (87%), Gaps = 1/317 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 2   IEKQFGKGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 60

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 61  LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 120

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 121 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 180

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 181 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 240

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 241 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 300

Query: 323 IAENIESLLRQNAGLVA 339
           IA  IE+ +R++ G+V+
Sbjct: 301 IAREIENRIRESLGVVS 317


>gi|157326919|gb|ABV44572.1| RecA [Burkholderia cenocepacia]
          Length = 319

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 2   FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 60

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 61  VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 120

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 121 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 180

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 181 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 240

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ GQ++GQG++N++ FLREN EIA  
Sbjct: 241 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGQKIGQGKDNAREFLRENSEIARE 300

Query: 327 IESLLRQNAGLVA 339
           IE+ +R++ G+V+
Sbjct: 301 IENRIRESLGVVS 313


>gi|308212784|gb|ADO21620.1| RecA [Burkholderia arboris]
          Length = 318

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/317 (70%), Positives = 276/317 (87%), Gaps = 1/317 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEQQFGKGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESLLRQNAGLVA 339
           IA  IE+ +R++ G+V+
Sbjct: 300 IAREIENRIRESLGVVS 316


>gi|296837389|gb|ADH59553.1| DNA recombinase [Burkholderia contaminans]
          Length = 316

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/316 (69%), Positives = 275/316 (87%), Gaps = 1/316 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESLLRQNAGLV 338
           IA  IE+ +R++ G+V
Sbjct: 300 IAREIENRIRESLGVV 315


>gi|157326975|gb|ABV44600.1| RecA [Burkholderia multivorans]
          Length = 314

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/315 (70%), Positives = 275/315 (87%), Gaps = 1/315 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LV
Sbjct: 60  TLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FIN
Sbjct: 120 RSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ 
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN 
Sbjct: 240 PFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENP 299

Query: 322 EIAENIESLLRQNAG 336
           EIA  IE+ +R++ G
Sbjct: 300 EIAREIENRIRESLG 314


>gi|329896396|ref|ZP_08271495.1| RecA protein [gamma proteobacterium IMCC3088]
 gi|328921816|gb|EGG29187.1| RecA protein [gamma proteobacterium IMCC3088]
          Length = 345

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/342 (64%), Positives = 279/342 (81%), Gaps = 3/342 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALEAAL+QI+R +GKG +M++G    +   I  +S+GSLGLDIALGIGG PKGRI 
Sbjct: 4   NKQKALEAALAQIERQFGKGTVMRMGDSERV--AIPSISTGSLGLDIALGIGGLPKGRIC 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK GGT AF+DAEHALD IYA +LGV + +L++SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAEAQKLGGTAAFIDAEHALDPIYAERLGVQVDDLILSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALE+T+MLVRSGAVD++V+DSVAALTP+AEIEGDMG+S  G+QARL+SQA+RKLT SI
Sbjct: 122 EQALEVTEMLVRSGAVDVLVVDSVAALTPKAEIEGDMGDSHVGLQARLLSQAMRKLTGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++K+ D I GN+T
Sbjct: 182 KQTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKEGDEIVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EF IMYG GI   GELID GVK  ++DKSGAW+++KG ++GQG+
Sbjct: 242 RVKVVKNKVSPPFKQAEFQIMYGSGIYHNGELIDWGVKLGLIDKSGAWYAYKGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
            N+  FL +N +IA+ IE+ +R    L      + P   T+D
Sbjct: 302 ANAAKFLSDNKDIADEIEAAIRAQT-LTTAKPAEAPVAETQD 342


>gi|330818200|ref|YP_004361905.1| Recombinase A [Burkholderia gladioli BSR3]
 gi|327370593|gb|AEA61949.1| Recombinase A [Burkholderia gladioli BSR3]
          Length = 359

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/329 (69%), Positives = 284/329 (86%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM+LG      E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 13  EKSKALAAALAQIEKQFGKGSIMKLGD-AEAKEDIQVVSTGSLGLDIALGVGGLPRGRVV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 72  EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 132 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G ++GQG+
Sbjct: 252 RVKVVKNKVSPPFRESIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGDKIGQGK 311

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN +IA  IE+ +R++ G+ A
Sbjct: 312 DNAREFLRENPDIALEIENRIRESLGVAA 340


>gi|296837393|gb|ADH59555.1| DNA recombinase [Burkholderia arboris]
          Length = 315

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/316 (69%), Positives = 275/316 (87%), Gaps = 1/316 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESLLRQNAGLV 338
           IA  IE+ +R++ G+V
Sbjct: 300 IAREIENRIRESLGVV 315


>gi|70904886|gb|AAZ14021.1| RecA [Burkholderia cenocepacia]
          Length = 324

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/316 (69%), Positives = 275/316 (87%), Gaps = 1/316 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI
Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299

Query: 324 AENIESLLRQNAGLVA 339
           A  IE+ +R++ G+VA
Sbjct: 300 AREIENRIRESLGVVA 315


>gi|52426298|ref|YP_089435.1| recombinase A [Mannheimia succiniciproducens MBEL55E]
 gi|59798184|sp|Q65QB0|RECA_MANSM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|52308350|gb|AAU38850.1| RecA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 351

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/348 (65%), Positives = 285/348 (81%), Gaps = 7/348 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL QI++ +GKGAIM+LG   ++   +E +S+GS+GLD+ALGIGG P GR+V
Sbjct: 6   EKSKALAAALGQIEKQFGKGAIMKLGDTQAL--DVESISTGSIGLDVALGIGGLPMGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IAQ+QK G  CAF+DAEHALD IYA KLGVD+K LL+SQPD G
Sbjct: 64  EIFGPESSGKTTLTLSVIAQAQKAGKVCAFIDAEHALDPIYAAKLGVDVKELLVSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT  I
Sbjct: 124 EQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTGQI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C++VFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRRVG++KD D I GN+T
Sbjct: 184 KNANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRVGAVKDGDEIIGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+QV+F I+YGEGIS  GELI+LGVK  +VDKSGAW+++ G ++GQG+
Sbjct: 244 RVKVVKNKLAPPFRQVDFQILYGEGISKNGELIELGVKHKLVDKSGAWYAYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD---SLLQEPAINTKDDAD 355
            N+  +L EN  +A  +E+ +R  A L+A+   +LL +   N+++  D
Sbjct: 304 ANAMKWLAENPTVAAELENKIR--AELLANPEQALLADIETNSEEKED 349


>gi|224551705|gb|ACN54252.1| RecA [Burkholderia sp. MexII-219]
          Length = 319

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/316 (69%), Positives = 274/316 (86%), Gaps = 1/316 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 5   FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 63

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 64  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 123

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 124 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 183

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 184 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 243

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 244 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 303

Query: 327 IESLLRQNAGLVADSL 342
           IE+ +R++ G+VA  +
Sbjct: 304 IENRIRESLGVVASPM 319


>gi|70904896|gb|AAZ14026.1| RecA [Burkholderia cenocepacia]
          Length = 330

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/325 (68%), Positives = 281/325 (86%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +G+G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGEGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           V+NK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++G G++N++
Sbjct: 240 VENKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGPGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
             +RE+ EIA  IE+ +R++ G+V+
Sbjct: 300 DSVRESAEIAREIENRIRESLGVVS 324


>gi|70904866|gb|AAZ14012.1| RecA [Burkholderia multivorans]
          Length = 318

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/317 (69%), Positives = 276/317 (87%), Gaps = 1/317 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESLLRQNAGLVA 339
           IA  IE+ +R++ G+ A
Sbjct: 300 IAREIENRIRESLGVAA 316


>gi|296837403|gb|ADH59560.1| DNA recombinase [Burkholderia cenocepacia]
          Length = 317

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/317 (69%), Positives = 276/317 (87%), Gaps = 1/317 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FI+Q
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIHQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESLLRQNAGLVA 339
           IA  IE+ +R++ G+VA
Sbjct: 300 IAREIENRIRESLGVVA 316


>gi|297539361|ref|YP_003675130.1| recombination protein RecA [Methylotenera sp. 301]
 gi|297258708|gb|ADI30553.1| recA protein [Methylotenera sp. 301]
          Length = 342

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/343 (65%), Positives = 289/343 (84%), Gaps = 4/343 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G+I E I+ VS+GSLGLDIALGIGG P+GR++
Sbjct: 4   NKSKALSAALAQIEKQFGKGSIMRMGD-GNIGEDIQAVSTGSLGLDIALGIGGLPRGRVI 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK+GG  AF+DAEHALD  YA KLGV++ +LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLSVIAQMQKSGGVAAFIDAEHALDPQYAAKLGVNVPDLLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VDI+VIDSVAALTPRAEIEG+MG+S  G+QARLMSQALRKLT +I
Sbjct: 123 EQALEIVDMLVRSGSVDIVVIDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKLTGNI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK  D + G++T
Sbjct: 183 KRTNTMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKKGDEVIGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV+KNK+A PFKQ EFDI+YGEGIS  GE+I+LG    +V+K+G+W+S+ G+++GQG+
Sbjct: 243 RVKVIKNKVAPPFKQAEFDILYGEGISREGEIIELGANLKMVEKAGSWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           +N++ FLR N  IA  I++ +R N   +++++   PA+ +++D
Sbjct: 303 DNAREFLRSNPAIANEIDAKIRANMKSLSEAM---PAVRSEED 342


>gi|296112538|ref|YP_003626476.1| recombination protein RecA [Moraxella catarrhalis RH4]
 gi|295920232|gb|ADG60583.1| recombination protein RecA [Moraxella catarrhalis RH4]
 gi|326561307|gb|EGE11665.1| recombinase A [Moraxella catarrhalis 7169]
 gi|326562548|gb|EGE12863.1| recombinase A [Moraxella catarrhalis 46P47B1]
 gi|326566176|gb|EGE16330.1| recombinase A [Moraxella catarrhalis BC1]
 gi|326569092|gb|EGE19155.1| recombinase A [Moraxella catarrhalis BC8]
 gi|326571693|gb|EGE21708.1| recombinase A [Moraxella catarrhalis BC7]
 gi|326576322|gb|EGE26232.1| recombinase A [Moraxella catarrhalis CO72]
          Length = 349

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 224/345 (64%), Positives = 284/345 (82%), Gaps = 3/345 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AAL+QI++ +GK  IM LG + +  + ++VVS+GSLGLDIALGIGG PKGRI+
Sbjct: 4   NKEKALKAALAQIEKQFGKNTIMHLGDETAKLD-VDVVSTGSLGLDIALGIGGLPKGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L TIA+ QK GGTCAF+DAEHALD IYA+KLGV++ +LL+SQPD G
Sbjct: 63  EIFGPESSGKTTLTLQTIAECQKQGGTCAFIDAEHALDPIYAKKLGVNIDDLLVSQPDNG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T + 
Sbjct: 123 EQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNA 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+KD D I G++T
Sbjct: 183 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDGDEIIGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV+KNKMA PF+Q EF IMYGEGI+  GE+IDLGV    V KSGAW+S+   ++GQG+
Sbjct: 243 RVKVIKNKMAPPFRQTEFQIMYGEGINRLGEVIDLGVDIGAVGKSGAWYSYGDGKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ--EPAINTKDD 353
            N+  +L+EN  IA  IE+ +R++       +++  EP  + +DD
Sbjct: 303 ANTVKYLQENPAIASEIEAKVRESKLATVTPIVESDEPEEHLEDD 347


>gi|224551687|gb|ACN54243.1| RecA [Burkholderia sp. MDII-104r]
          Length = 320

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 6   FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 64

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+V
Sbjct: 65  VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSV 124

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 125 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 184

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 185 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 244

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 245 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 304

Query: 327 IESLLRQNAGLVA 339
           IE+ +R++ G+V+
Sbjct: 305 IENRIRESLGVVS 317


>gi|157326901|gb|ABV44563.1| RecA [Burkholderia cenocepacia]
          Length = 322

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/316 (69%), Positives = 275/316 (87%), Gaps = 1/316 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI
Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299

Query: 324 AENIESLLRQNAGLVA 339
           A  IE+ +R++ G+V+
Sbjct: 300 AREIENRIRESLGVVS 315


>gi|157326951|gb|ABV44588.1| RecA [Burkholderia cenocepacia]
          Length = 317

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/316 (69%), Positives = 275/316 (87%), Gaps = 1/316 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI
Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299

Query: 324 AENIESLLRQNAGLVA 339
           A  IE+ +R++ G+V+
Sbjct: 300 AREIENRIRESLGVVS 315


>gi|515814|emb|CAA37537.1| unnamed protein product [Bordetella pertussis]
          Length = 352

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/319 (69%), Positives = 275/319 (86%), Gaps = 2/319 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           SQI++ +GKG+IM+ G    +   I+VVS+GSLGLDIALG+GG P   ++E+YGPESSGK
Sbjct: 22  SQIEKQFGKGSIMRYGDN-EVEHDIQVVSTGSLGLDIALGVGGLPAA-VIEVYGPESSGK 79

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA+ QK GGTCAFVDAEHALD  YA KLGV+L +LLISQPDTGEQALEITD L
Sbjct: 80  TTLTLQVIAEMQKLGGTCAFVDAEHALDVQYASKLGVNLTDLLISQPDTGEQALEITDAL 139

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT++I R+ C+++FI
Sbjct: 140 VRSGSVDLIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFI 199

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK  D + GN+TRVKVVKNK+A
Sbjct: 200 NQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKKGDEVVGNETRVKVVKNKVA 259

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
            PFKQ EFDIMYG GIS  GE+IDLGV+A++VDKSGAW+S+ G R+GQG++N + +L+E+
Sbjct: 260 PPFKQAEFDIMYGSGISREGEIIDLGVQANVVDKSGAWYSYSGNRIGQGKDNVREYLKEH 319

Query: 321 IEIAENIESLLRQNAGLVA 339
            E+A  IE+ +R+N G+V+
Sbjct: 320 KEMAIEIENKVRENQGIVS 338


>gi|157326925|gb|ABV44575.1| RecA [Burkholderia cenocepacia]
          Length = 322

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/317 (69%), Positives = 276/317 (87%), Gaps = 1/317 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IV+K+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVEKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESLLRQNAGLVA 339
           IA  IE+ +R++ G+V+
Sbjct: 300 IARQIENRIRESLGVVS 316


>gi|224551689|gb|ACN54244.1| RecA [Burkholderia sp. MDII-137p]
          Length = 319

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 4   FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 62

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+V
Sbjct: 63  VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSV 122

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 123 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 182

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 183 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 242

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 243 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 302

Query: 327 IESLLRQNAGLVA 339
           IE+ +R++ G+V+
Sbjct: 303 IENRIRESLGVVS 315


>gi|70904919|gb|AAZ14037.1| RecA [Burkholderia ambifaria]
          Length = 314

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 219/312 (70%), Positives = 273/312 (87%), Gaps = 1/312 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 2   FGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 60

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            +A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 61  VVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 120

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 121 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 180

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 181 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 240

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 241 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 300

Query: 327 IESLLRQNAGLV 338
           IE+ +R++ G+V
Sbjct: 301 IENRIRESLGVV 312


>gi|70904877|gb|AAZ14017.1| RecA [Burkholderia cenocepacia]
          Length = 335

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/329 (69%), Positives = 284/329 (86%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+ I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAHIEKQFGKGSIMRMGD-GEAKEDIQVVSTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IV K+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVYKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+ A
Sbjct: 303 DNAREFLRENPEIALEIENRIRESXGVAA 331


>gi|157326889|gb|ABV44557.1| RecA [Burkholderia cenocepacia]
 gi|157326891|gb|ABV44558.1| RecA [Burkholderia cenocepacia]
 gi|157326895|gb|ABV44560.1| RecA [Burkholderia cenocepacia]
 gi|157326911|gb|ABV44568.1| RecA [Burkholderia cenocepacia]
 gi|157326915|gb|ABV44570.1| RecA [Burkholderia cenocepacia]
          Length = 321

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/316 (69%), Positives = 275/316 (87%), Gaps = 1/316 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI
Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299

Query: 324 AENIESLLRQNAGLVA 339
           A  IE+ +R++ G+V+
Sbjct: 300 AREIENRIRESLGVVS 315


>gi|224551695|gb|ACN54247.1| RecA [Burkholderia cenocepacia]
          Length = 319

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 6   FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 64

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 65  VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 124

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 125 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 184

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 185 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 244

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 245 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 304

Query: 327 IESLLRQNAGLVA 339
           IE+ +R++ G+V+
Sbjct: 305 IENRIRESLGVVS 317


>gi|90020935|ref|YP_526762.1| recombinase A [Saccharophagus degradans 2-40]
 gi|123277374|sp|Q21L79|RECA_SACD2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|89950535|gb|ABD80550.1| recA protein [Saccharophagus degradans 2-40]
          Length = 348

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 216/321 (67%), Positives = 272/321 (84%), Gaps = 2/321 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI R +GKG +M+LG +G   E +  +S+GSLGLD+ALGIGG PKGRIVE
Sbjct: 5   KSKALEAALSQIDRQFGKGTVMRLGDKGR--EKMPAISTGSLGLDVALGIGGLPKGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL L  IA++Q+ GGTCAFVDAEHALD +YA KLGV++ +L+ISQPD GE
Sbjct: 63  IYGPESSGKTTLTLQVIAEAQRQGGTCAFVDAEHALDPVYAEKLGVNVDDLIISQPDNGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALE+ DMLVRSGAVD++V+DSVAALTP+AEIEGDMG+   G+QARLMSQALRK+T +I 
Sbjct: 123 QALEVADMLVRSGAVDVLVVDSVAALTPKAEIEGDMGDHHVGLQARLMSQALRKITGNIK 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
            + C+ +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GS+K+ D + G+ TR
Sbjct: 183 NANCLAIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSVKEGDEVVGSDTR 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PFKQ EF I+YG+GI+  GE++D GVK  ++DK+GAW+S+ G ++GQG+ 
Sbjct: 243 VKVVKNKVAPPFKQAEFQILYGQGINRLGEIVDFGVKLGLIDKAGAWYSYNGDKIGQGKA 302

Query: 312 NSKIFLRENIEIAENIESLLR 332
           N+  +LR+N E+AE +E  ++
Sbjct: 303 NAMQYLRDNKEVAEFLEQKIK 323


>gi|308212792|gb|ADO21624.1| RecA [Burkholderia arboris]
          Length = 317

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/316 (69%), Positives = 275/316 (87%), Gaps = 1/316 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI
Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299

Query: 324 AENIESLLRQNAGLVA 339
           A  IE+ +R++ G+V+
Sbjct: 300 AREIENRIRESLGVVS 315


>gi|224551711|gb|ACN54255.1| RecA [Burkholderia sp. MVC2-55]
          Length = 317

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 4   FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 62

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 63  VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 122

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 123 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 182

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 183 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 242

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 243 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 302

Query: 327 IESLLRQNAGLVA 339
           IE+ +R++ G+V+
Sbjct: 303 IENRIRESLGVVS 315


>gi|157326905|gb|ABV44565.1| RecA [Burkholderia cenocepacia]
          Length = 320

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/316 (69%), Positives = 275/316 (87%), Gaps = 1/316 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI
Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299

Query: 324 AENIESLLRQNAGLVA 339
           A  IE+ +R++ G+V+
Sbjct: 300 AREIENRIRESLGVVS 315


>gi|224551693|gb|ACN54246.1| RecA [Burkholderia cenocepacia]
          Length = 319

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 6   FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 64

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 65  VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 124

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 125 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 184

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 185 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 244

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 245 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 304

Query: 327 IESLLRQNAGLVA 339
           IE+ +R++ G+V+
Sbjct: 305 IENRIRESLGVVS 317


>gi|224551703|gb|ACN54251.1| RecA [Burkholderia cenocepacia]
          Length = 319

 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 6   FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 64

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 65  VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 124

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 125 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 184

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 185 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 244

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 245 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 304

Query: 327 IESLLRQNAGLVA 339
           IE+ +R++ G+V+
Sbjct: 305 IENRIRESLGVVS 317


>gi|224551691|gb|ACN54245.1| RecA [Burkholderia sp. MDIII-B238]
          Length = 318

 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 4   FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 62

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 63  VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 122

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 123 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 182

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 183 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 242

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 243 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 302

Query: 327 IESLLRQNAGLVA 339
           IE+ +R++ G+V+
Sbjct: 303 IENRIRESLGVVS 315


>gi|224551683|gb|ACN54241.1| RecA [Burkholderia cenocepacia]
 gi|224551685|gb|ACN54242.1| RecA [Burkholderia cenocepacia]
 gi|224551709|gb|ACN54254.1| RecA [Burkholderia cenocepacia]
          Length = 318

 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 5   FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 63

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 64  VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 123

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 124 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 183

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 184 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 243

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 244 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 303

Query: 327 IESLLRQNAGLVA 339
           IE+ +R++ G+V+
Sbjct: 304 IENRIRESLGVVS 316


>gi|224551675|gb|ACN54237.1| RecA [Burkholderia cenocepacia]
          Length = 321

 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 6   FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 64

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 65  VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 124

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 125 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 184

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 185 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 244

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 245 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 304

Query: 327 IESLLRQNAGLVA 339
           IE+ +R++ G+V+
Sbjct: 305 IENRIRESLGVVS 317


>gi|255318935|ref|ZP_05360160.1| protein RecA [Acinetobacter radioresistens SK82]
 gi|262378327|ref|ZP_06071484.1| recA protein [Acinetobacter radioresistens SH164]
 gi|255303952|gb|EET83144.1| protein RecA [Acinetobacter radioresistens SK82]
 gi|262299612|gb|EEY87524.1| recA protein [Acinetobacter radioresistens SH164]
          Length = 348

 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/342 (65%), Positives = 275/342 (80%), Gaps = 8/342 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AALSQI++ +GK  +M+LG   +  + +E VS+GSL LDIALGIGG PKGRIV
Sbjct: 4   NKSKALNAALSQIEKQFGKNTVMRLGD--NTVQAVEAVSTGSLTLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ L  IAQ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD G
Sbjct: 62  EIYGPESSGKTTMTLQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IV+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T + 
Sbjct: 122 EQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNA 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G +K+ D I G++T
Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIIGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNKMA PFK+  F I+YG+G++  GELIDL V+  I+ K+GAW+S++G ++GQG+
Sbjct: 242 KVKVVKNKMAPPFKEALFQILYGKGVNHLGELIDLAVQQEIIQKAGAWYSYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ------NAGLVADSLLQEP 346
            N    L EN E+A  +E L+R+      NA L  D   + P
Sbjct: 302 NNVIRHLEENPELAVEVERLIRELLLTTNNAPLAEDEAEEVP 343


>gi|157326887|gb|ABV44556.1| RecA [Burkholderia cenocepacia]
          Length = 314

 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 3   FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 61

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 62  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 121

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 122 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 181

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 182 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 241

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 242 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 301

Query: 327 IESLLRQNAGLVA 339
           IE+ +R++ G+VA
Sbjct: 302 IENRIRESLGVVA 314


>gi|224551667|gb|ACN54233.1| RecA [Burkholderia arboris]
          Length = 318

 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 5   FGKGSIMRMGD-GDATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 63

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 64  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 123

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 124 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 183

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 184 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 243

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 244 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 303

Query: 327 IESLLRQNAGLVA 339
           IE+ +R++ G+V+
Sbjct: 304 IENRIRESLGVVS 316


>gi|224551697|gb|ACN54248.1| RecA [Burkholderia cenocepacia]
          Length = 317

 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 5   FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 63

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 64  VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 123

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 124 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 183

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 184 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 243

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 244 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 303

Query: 327 IESLLRQNAGLVA 339
           IE+ +R++ G+V+
Sbjct: 304 IENRIRESLGVVS 316


>gi|157326897|gb|ABV44561.1| RecA [Burkholderia cenocepacia]
          Length = 319

 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGLVA 339
           IE+ +R++ G+V+
Sbjct: 300 IENRIRESLGVVS 312


>gi|157326913|gb|ABV44569.1| RecA [Burkholderia cenocepacia]
          Length = 314

 Score =  465 bits (1196), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/315 (69%), Positives = 274/315 (86%), Gaps = 1/315 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI
Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299

Query: 324 AENIESLLRQNAGLV 338
           A  IE+ +R++ G+V
Sbjct: 300 AREIENRIRESLGVV 314


>gi|157326953|gb|ABV44589.1| RecA [Burkholderia cenocepacia]
          Length = 316

 Score =  465 bits (1196), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 3   FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 61

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 62  VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 121

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 122 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 181

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 182 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 241

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 242 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 301

Query: 327 IESLLRQNAGLVA 339
           IE+ +R++ G+V+
Sbjct: 302 IENRIRESLGVVS 314


>gi|162769939|emb|CAP58285.1| DNA recombinase [Burkholderia contaminans]
          Length = 324

 Score =  465 bits (1196), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/312 (70%), Positives = 272/312 (87%), Gaps = 1/312 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 2   FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 60

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 61  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 120

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 121 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 180

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 181 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 240

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 241 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 300

Query: 327 IESLLRQNAGLV 338
           IE+ +R++ G+V
Sbjct: 301 IENRIRESLGVV 312


>gi|330720883|gb|EGG99071.1| RecA protein [gamma proteobacterium IMCC2047]
          Length = 343

 Score =  465 bits (1196), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/330 (67%), Positives = 275/330 (83%), Gaps = 4/330 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL+ ALSQI + +GKG++M++G Q      +  +S+GSLGLDIALGIGG PKGRI+
Sbjct: 4   NKQRALDMALSQIDKQFGKGSVMRMGDQER--PNVPAISTGSLGLDIALGIGGLPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK GGT AF+DAEHALD  YA+K+GVD+ NLL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAEAQKAGGTAAFIDAEHALDPDYAQKIGVDVDNLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVDI+VIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRK+T ++
Sbjct: 122 EQALEIADALVRSGAVDILVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKMTGNV 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+T
Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFKQ EF IMYG+GI   GELIDLGVK  +V K+GAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKMAPPFKQTEFQIMYGKGIFRMGELIDLGVKQGLVGKAGAWYSYQGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
            N+  FL +N  +AE IE  +R  A L+ D
Sbjct: 302 ANAAQFLNDNPTVAEEIEGQIR--AALLGD 329


>gi|296802982|gb|ADH51567.1| DNA recombinase [Burkholderia contaminans]
          Length = 316

 Score =  465 bits (1196), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/312 (70%), Positives = 272/312 (87%), Gaps = 1/312 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 5   FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 63

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 64  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 123

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 124 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 183

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 184 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 243

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 244 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 303

Query: 327 IESLLRQNAGLV 338
           IE+ +R++ G+V
Sbjct: 304 IENRIRESLGVV 315


>gi|301165521|emb|CBW25092.1| recombinase A [Bacteriovorax marinus SJ]
          Length = 374

 Score =  465 bits (1196), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/353 (63%), Positives = 288/353 (81%), Gaps = 4/353 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K+KAL+ AL+ I++ +GKGAIM+L S+  + E +  +S+G LGLD+ALG+GG P+GRI+
Sbjct: 13  NKTKALDLALATIEKQFGKGAIMKLDSEKKL-EKVPAISTGCLGLDLALGVGGIPQGRII 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL LH  A+ QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+G
Sbjct: 72  EVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEHALDTYYAEKLGVDVPNTLISQPDSG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGAVD++++DSVAALTPRAE+EGDMG+S  G+QARLMSQALRKLT SI
Sbjct: 132 EQALEIADMLVRSGAVDLLIVDSVAALTPRAELEGDMGDSHMGLQARLMSQALRKLTGSI 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SRS   ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIRR+G+IK+ D + G++T
Sbjct: 192 SRSNTTVIFINQLRMKIGVMFGNPETTTGGNALKFYASVRVDIRRIGAIKNGDEVVGSRT 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFKQ+EFDIMYGEGIS  G+++DL V+  +V+K+GAWFS+   ++GQGR
Sbjct: 252 RVKIVKNKVAPPFKQIEFDIMYGEGISKTGDVLDLAVEHGVVEKAGAWFSYNNAKIGQGR 311

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           ENSK FL EN +I E I + +    GL+    L+E A++ +     ++T  VE
Sbjct: 312 ENSKNFLSENKDIFEEIRNKVLAKNGLIT---LEEEAVDKETGEIIEETAPVE 361


>gi|170664176|gb|ACB28507.1| RecA [Burkholderia pyrrocinia]
          Length = 310

 Score =  464 bits (1195), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/311 (70%), Positives = 272/311 (87%), Gaps = 1/311 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QKTGGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+V
Sbjct: 60  VIAELQKTGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGL 337
           IE+ +R++ G+
Sbjct: 300 IENRIRESLGV 310


>gi|70904882|gb|AAZ14019.1| RecA [Burkholderia cenocepacia]
          Length = 309

 Score =  464 bits (1195), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/308 (71%), Positives = 270/308 (87%), Gaps = 1/308 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGP
Sbjct: 1   LAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALE
Sbjct: 60  ESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           ITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C
Sbjct: 120 ITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNC 179

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVV
Sbjct: 180 LVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVV 239

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ 
Sbjct: 240 KNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNARE 299

Query: 316 FLRENIEI 323
           FLREN EI
Sbjct: 300 FLRENPEI 307


>gi|57340309|gb|AAW50125.1| RecA [Burkholderia ubonensis]
          Length = 319

 Score =  464 bits (1195), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/316 (69%), Positives = 274/316 (86%), Gaps = 1/316 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEATEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI
Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299

Query: 324 AENIESLLRQNAGLVA 339
           A  IE+ +R++ G+ A
Sbjct: 300 AREIENRIRESLGVAA 315


>gi|70904851|gb|AAZ14005.1| RecA [Burkholderia cepacia]
 gi|296837399|gb|ADH59558.1| DNA recombinase [Burkholderia contaminans]
          Length = 316

 Score =  464 bits (1195), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/312 (70%), Positives = 272/312 (87%), Gaps = 1/312 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 3   FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 61

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 62  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 121

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 122 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 181

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 182 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 241

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 242 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 301

Query: 327 IESLLRQNAGLV 338
           IE+ +R++ G+V
Sbjct: 302 IENRIRESLGVV 313


>gi|296803010|gb|ADH51581.1| DNA recombinase [Burkholderia contaminans]
          Length = 315

 Score =  464 bits (1195), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/312 (70%), Positives = 272/312 (87%), Gaps = 1/312 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 3   FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 61

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 62  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 121

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 122 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 181

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 182 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 241

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 242 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 301

Query: 327 IESLLRQNAGLV 338
           IE+ +R++ G+V
Sbjct: 302 IENRIRESLGVV 313


>gi|110834662|ref|YP_693521.1| recA protein [Alcanivorax borkumensis SK2]
 gi|110647773|emb|CAL17249.1| recA protein [Alcanivorax borkumensis SK2]
          Length = 344

 Score =  464 bits (1195), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 217/322 (67%), Positives = 277/322 (86%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKSKAL AALSQI+R +GKG++M++G +    E +  +S+GSLGLD+ALGIGG PKGRIV
Sbjct: 3   DKSKALSAALSQIERQFGKGSVMRMGDRKR--ERMPSISTGSLGLDVALGIGGLPKGRIV 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +L++SQPDTG
Sbjct: 61  EIYGPESSGKTTLTLSVIAQAQKKGATCAFVDAEHALDPDYAEKLGVNVDDLIVSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSGAVD++++DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T ++
Sbjct: 121 EQALEITDMLVRSGAVDVVIVDSVAALVPKAEIEGEMGDTHVGLQARLMSQALRKITGNV 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  ++VFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G++K  D +TGN+T
Sbjct: 181 KNANTLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAVKQGDEVTGNET 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF+Q EF I+YG+GI+  GE++DLGV+  +VDKSGAW+++KG ++GQG+
Sbjct: 241 RVKVVKNKVSPPFRQAEFQILYGQGINQLGEVLDLGVQQGLVDKSGAWYAYKGDKIGQGK 300

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           +N+  +LREN  IAE IE+ +R
Sbjct: 301 QNACEYLRENPAIAEEIETEIR 322


>gi|296837373|gb|ADH59545.1| DNA recombinase [Burkholderia contaminans]
 gi|296837385|gb|ADH59551.1| DNA recombinase [Burkholderia contaminans]
          Length = 316

 Score =  464 bits (1195), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/312 (70%), Positives = 272/312 (87%), Gaps = 1/312 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 3   FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 61

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 62  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 121

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 122 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 181

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 182 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 241

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 242 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 301

Query: 327 IESLLRQNAGLV 338
           IE+ +R++ G+V
Sbjct: 302 IENRIRESLGVV 313


>gi|296803012|gb|ADH51582.1| DNA recombinase [Burkholderia multivorans]
          Length = 314

 Score =  464 bits (1195), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 2   FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 60

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVRSG++
Sbjct: 61  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRSGSI 120

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 121 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 180

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 181 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 240

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 241 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 300

Query: 327 IESLLRQNAGLVA 339
           IE+ +R++ G+ A
Sbjct: 301 IENRIRESLGVAA 313


>gi|296803052|gb|ADH51602.1| DNA recombinase [Burkholderia contaminans]
          Length = 313

 Score =  464 bits (1195), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/312 (70%), Positives = 272/312 (87%), Gaps = 1/312 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 3   FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 61

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 62  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 121

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 122 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 181

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 182 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 241

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 242 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 301

Query: 327 IESLLRQNAGLV 338
           IE+ +R++ G+V
Sbjct: 302 IENRIRESLGVV 313


>gi|114775363|ref|ZP_01450931.1| recombinase A [Mariprofundus ferrooxydans PV-1]
 gi|114553474|gb|EAU55855.1| recombinase A [Mariprofundus ferrooxydans PV-1]
          Length = 336

 Score =  464 bits (1195), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 217/330 (65%), Positives = 275/330 (83%), Gaps = 2/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKSKAL+ ALSQI+R +GKG +M+LG    +   + VV SGSL LD ALG+GG+P+GR++
Sbjct: 3   DKSKALDTALSQIERQFGKGTVMRLGDHAKV--PVSVVPSGSLALDAALGVGGYPRGRVI 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA++QK GG  AFVDAEHALD  YA +LGVD+ NLL+SQPD+G
Sbjct: 61  EIYGPESSGKTTMALHAIAEAQKLGGQAAFVDAEHALDPSYAERLGVDVDNLLVSQPDSG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML RSG VDIIV+DSVAALTP+AE+EGDMG+S  G+QARLMSQALRKLT SI
Sbjct: 121 EQALEIVDMLTRSGGVDIIVVDSVAALTPKAELEGDMGDSHMGLQARLMSQALRKLTGSI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +RS  I++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD+RR+G+IK  D + GN T
Sbjct: 181 ARSNTIIIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDVRRIGAIKKGDEVMGNDT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ +F IMYGEG+S  GE++D+GV+  +V+KSGAW++   +R+GQGR
Sbjct: 241 RVKVVKNKVAPPFKQAQFSIMYGEGVSHAGEVLDMGVQYGLVNKSGAWYACGNERIGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           +N+  +L+E+ E+   IE+ +R+  GL+ +
Sbjct: 301 DNAMTYLKEHPEMLAEIETGVREALGLIKN 330


>gi|30524998|emb|CAD70708.1| RecA protein [Burkholderia fungorum]
          Length = 333

 Score =  464 bits (1195), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 218/317 (68%), Positives = 276/317 (87%), Gaps = 1/317 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG++M+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 10  IEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 68

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +A+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LVR
Sbjct: 69  LTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVR 128

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 129 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 188

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A P
Sbjct: 189 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPP 248

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQG++N++ FLREN +
Sbjct: 249 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQGKDNAREFLRENPD 308

Query: 323 IAENIESLLRQNAGLVA 339
           IA  IE+ +R++ G+ A
Sbjct: 309 IAREIENRIRESLGVNA 325


>gi|71361898|gb|AAZ30056.1| recombinant protein A [Moraxella catarrhalis O35E]
          Length = 349

 Score =  464 bits (1194), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 224/345 (64%), Positives = 283/345 (82%), Gaps = 3/345 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AAL+QI++ +GK  IM LG + +  + ++VVS+GSLGLDIALGIGG PKGRI+
Sbjct: 4   NKEKALKAALAQIEKQFGKNTIMHLGDETAKLD-VDVVSTGSLGLDIALGIGGLPKGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L TIA+ QK GGTCAF+DAEHALD IYA+KLGV++ +LL+SQPD G
Sbjct: 63  EIFGPESSGKTTLTLQTIAECQKQGGTCAFIDAEHALDPIYAKKLGVNIDDLLVSQPDNG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T + 
Sbjct: 123 EQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNA 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+KD D I G++T
Sbjct: 183 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDGDEIIGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV+KNKMA PF+Q EF IMYGEGI+  GE+IDLGV    V KSGAW+S+   ++GQG+
Sbjct: 243 RVKVIKNKMAPPFRQTEFQIMYGEGINRLGEVIDLGVDIGAVGKSGAWYSYGDGKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ--EPAINTKDD 353
            N+  +L+EN  IA  IE+ +R+        +++  EP  + +DD
Sbjct: 303 ANTVKYLQENPAIASEIEAKVREIKLATVTPIVESDEPEEHLEDD 347


>gi|70904868|gb|AAZ14013.1| RecA [Burkholderia multivorans]
          Length = 317

 Score =  464 bits (1194), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 5   FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 63

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVRSG++
Sbjct: 64  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRSGSI 123

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 124 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 183

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 184 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 243

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 244 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 303

Query: 327 IESLLRQNAGLVA 339
           IE+ +R++ G+ A
Sbjct: 304 IENRIRESLGVAA 316


>gi|296802998|gb|ADH51575.1| DNA recombinase [Burkholderia contaminans]
          Length = 313

 Score =  464 bits (1194), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/312 (70%), Positives = 272/312 (87%), Gaps = 1/312 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGLV 338
           IE+ +R++ G+V
Sbjct: 300 IENRIRESLGVV 311


>gi|326562574|gb|EGE12887.1| recombinase A [Moraxella catarrhalis 103P14B1]
 gi|326564101|gb|EGE14341.1| recombinase A [Moraxella catarrhalis 12P80B1]
 gi|326573518|gb|EGE23481.1| recombinase A [Moraxella catarrhalis 101P30B1]
 gi|326577768|gb|EGE27641.1| recombinase A [Moraxella catarrhalis O35E]
          Length = 349

 Score =  464 bits (1194), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/323 (68%), Positives = 274/323 (84%), Gaps = 1/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AAL+QI++ +GK  IM LG + +  + ++VVS+GSLGLDIALGIGG PKGRI+
Sbjct: 4   NKEKALKAALAQIEKQFGKNTIMHLGDETAKLD-VDVVSTGSLGLDIALGIGGLPKGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L TIA+ QK GGTCAF+DAEHALD IYA+KLGV++ +LL+SQPD G
Sbjct: 63  EIFGPESSGKTTLTLQTIAECQKQGGTCAFIDAEHALDPIYAKKLGVNIDDLLVSQPDNG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T + 
Sbjct: 123 EQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNA 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+KD D I G++T
Sbjct: 183 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDGDEIIGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV+KNKMA PF+Q EF IMYGEGI+  GE+IDLGV    V KSGAW+S+   ++GQG+
Sbjct: 243 RVKVIKNKMAPPFRQTEFQIMYGEGINRLGEVIDLGVDIGAVGKSGAWYSYGDGKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN  IA  IE+ +R+
Sbjct: 303 ANTVKYLQENPAIASEIEAKVRE 325


>gi|315635224|ref|ZP_07890501.1| recombination protein A [Aggregatibacter segnis ATCC 33393]
 gi|315475970|gb|EFU66725.1| recombination protein A [Aggregatibacter segnis ATCC 33393]
          Length = 350

 Score =  464 bits (1194), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/348 (65%), Positives = 280/348 (80%), Gaps = 11/348 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALEAAL QI++ +GKGAIM+LG    +   IE +S+GS GLD+ALGIGG P GRIV
Sbjct: 6   EKQKALEAALGQIEKQFGKGAIMKLGDSQKL--DIEAISTGSFGLDLALGIGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA++QK G TCAF+DAEHALD IYA KLGVD+K LL+SQPD G
Sbjct: 64  EIFGPESSGKTTLTLSVIAEAQKAGKTCAFIDAEHALDPIYASKLGVDVKELLVSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT  I
Sbjct: 124 EQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTGQI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRRVGSIK+ D + GN+T
Sbjct: 184 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRVGSIKEGDEVIGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+QV+F I+YGEGIS   ELIDLGVK  ++ K+GAW++++ +++GQG+
Sbjct: 244 RVKVVKNKVAPPFRQVDFQILYGEGISKESELIDLGVKHKLISKAGAWYAYENEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            N+  +L+EN E A+ IES LR       D LL  P   T   AD +D
Sbjct: 304 TNAMKWLKENPEQAKLIESTLR-------DELLAHP--ETAITADVED 342


>gi|70904855|gb|AAZ14007.1| RecA [Burkholderia cenocepacia]
          Length = 316

 Score =  464 bits (1194), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/317 (69%), Positives = 275/317 (86%), Gaps = 1/317 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGE IS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGERISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESLLRQNAGLVA 339
           IA  IE+ +R++ G+VA
Sbjct: 300 IAREIENRIRESLGVVA 316


>gi|226939722|ref|YP_002794795.1| recombinase A [Laribacter hongkongensis HLHK9]
 gi|254790435|sp|C1D4J2|RECA_LARHH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226714648|gb|ACO73786.1| RecA [Laribacter hongkongensis HLHK9]
          Length = 354

 Score =  464 bits (1194), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 217/331 (65%), Positives = 281/331 (84%), Gaps = 1/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   DK KAL AALSQI++ +GKG+IM++ ++  + + ++V+S+GSLGLD+ALG+GG P+
Sbjct: 1   MAETDKQKALSAALSQIEKQFGKGSIMRM-NETQVNDNLQVISTGSLGLDMALGVGGLPR 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTTL L  +A++QK GGTCA++DAE+ALD +YA KLGV + +LL+SQ
Sbjct: 60  GRVVEIYGPESSGKTTLCLQVVAEAQKLGGTCAYIDAENALDPVYAGKLGVKVDDLLVSQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI DMLVRSG VD+IV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL
Sbjct: 120 PDTGEQALEICDMLVRSGGVDVIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T +I R+  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK  D I 
Sbjct: 180 TGNIKRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKKTDEII 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK++ PFKQ EFDI+YGEGIS  GE+I++GV    VDKSGAW+++ GQ++
Sbjct: 240 GNETRVKVVKNKVSPPFKQAEFDILYGEGISREGEIIEMGVANKFVDKSGAWYAYNGQKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG++N++ +LREN  IA+ IE  +R  AG+
Sbjct: 300 GQGKDNAREWLRENPAIAQEIEKKIRTAAGV 330


>gi|70904862|gb|AAZ14010.1| RecA [Burkholderia multivorans]
 gi|70904870|gb|AAZ14014.1| RecA [Burkholderia multivorans]
          Length = 318

 Score =  464 bits (1194), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 5   FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 63

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVRSG++
Sbjct: 64  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRSGSI 123

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 124 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 183

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 184 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 243

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 244 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 303

Query: 327 IESLLRQNAGLVA 339
           IE+ +R++ G+ A
Sbjct: 304 IENRIRESLGVAA 316


>gi|239787275|emb|CAX83753.1| RecA bacterial DNA recombination protein [uncultured bacterium]
          Length = 348

 Score =  464 bits (1194), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 225/327 (68%), Positives = 271/327 (82%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KALEAA+ QI+R +GKGAIM++   G I   + VVS+GSLGLDIALGIGG P+GR+V
Sbjct: 6   EREKALEAAIGQIERQFGKGAIMRM--DGDITVDVPVVSTGSLGLDIALGIGGLPRGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPE+SGKTTLALH  A+ Q+ GG  AFVDAEHALD  YARKLGV +  LL+SQPDTG
Sbjct: 64  EIYGPEASGKTTLALHVAAEVQRVGGVAAFVDAEHALDPAYARKLGVKVDQLLLSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEITDMLVRSGAVD++V+DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT SI
Sbjct: 124 EQGLEITDMLVRSGAVDLVVVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTGSI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SRSK I++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR   IK+KD + GN  
Sbjct: 184 SRSKAIVLFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRNAPIKEKDEVVGNHC 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF+  EFDI YGEGIS  GE++D+GV+  +V+KSGAW+S++G+R+GQGR
Sbjct: 244 KVKVVKNKLAPPFRSAEFDITYGEGISLEGEILDMGVEEKLVEKSGAWYSYEGERIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           E +K FL +N  +   +E  LR   GL
Sbjct: 304 EIAKRFLMDNPAMRNTLEDRLRVIKGL 330


>gi|301155303|emb|CBW14769.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Haemophilus parainfluenzae T3T1]
          Length = 351

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/349 (65%), Positives = 284/349 (81%), Gaps = 6/349 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E VS+GSLGLD+ALGIGG P GRIV
Sbjct: 6   EKQKALAAALGQIEKQFGKGSIMKLGDTQAL--DVESVSTGSLGLDVALGIGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IAQ+QK G TCAF+DAEHALD IYA KLGVD+K LL+SQPD G
Sbjct: 64  EIFGPESSGKTTLTLSVIAQAQKVGKTCAFIDAEHALDPIYAAKLGVDVKELLVSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVD++++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT  I
Sbjct: 124 EQALEICDALVRSGAVDVVIVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLTGQI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR GS+KD D + GN+T
Sbjct: 184 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKDGDEVIGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PF+QV+F I+YGEGIS  GELI+LGVK  +V+KSGAW+++ G+++GQG+
Sbjct: 244 RVKVVKNKLAAPFRQVDFQILYGEGISKAGELIELGVKHKLVEKSGAWYAYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA--DSLLQEPAINTKDDADKD 357
            N+  +L EN   ++ +E+ LR  A LVA  +  L      + DDA+ D
Sbjct: 304 ANAMKWLHENPAKSDELEAKLR--AELVANPEQALMADIEQSNDDAESD 350


>gi|296803056|gb|ADH51604.1| DNA recombinase [Burkholderia contaminans]
          Length = 316

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/312 (70%), Positives = 272/312 (87%), Gaps = 1/312 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGLV 338
           IE+ +R++ G+V
Sbjct: 300 IENRIRESLGVV 311


>gi|296837365|gb|ADH59541.1| DNA recombinase [Burkholderia stabilis]
          Length = 319

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/317 (69%), Positives = 276/317 (87%), Gaps = 1/317 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRL+IRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYASVRLEIRRIGSIKKIDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESLLRQNAGLVA 339
           IA  IE+ +R++ G+VA
Sbjct: 300 IAREIENRIRESLGVVA 316


>gi|150171066|emb|CAO01516.1| DNA recombination protein [Burkholderia arboris]
          Length = 322

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/312 (70%), Positives = 272/312 (87%), Gaps = 1/312 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRMGD-GDATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI
Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  
Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  I
Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299

Query: 328 ESLLRQNAGLVA 339
           E+ +R++ G+V+
Sbjct: 300 ENRIRESLGVVS 311


>gi|162454236|ref|YP_001616603.1| RecA protein [Sorangium cellulosum 'So ce 56']
 gi|161164818|emb|CAN96123.1| RecA protein [Sorangium cellulosum 'So ce 56']
          Length = 393

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/338 (65%), Positives = 279/338 (82%), Gaps = 6/338 (1%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N   KS ALE A++ +++ YGKGAIM+L    ++ + +  V++GSLGLDIALGIGG+P
Sbjct: 4   EKNTKQKSAALELAIASVEKEYGKGAIMRLKDGQTLHDEVAAVATGSLGLDIALGIGGYP 63

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRIVE+YGPESSGKTTL LH IA  Q+ GGT AF+DAEHALD  YA+KLGV    LLIS
Sbjct: 64  RGRIVEVYGPESSGKTTLTLHAIAAVQRAGGTAAFIDAEHALDVNYAKKLGVKTDELLIS 123

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI DMLVRS AVDIIV+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRK
Sbjct: 124 QPDYGEQALEIADMLVRSNAVDIIVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRK 183

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD---- 241
           LT + SRS+C+L+FINQ+RMKIGVMFGSPETT+GGNALKFY+SVRLDIRR+G+IK+    
Sbjct: 184 LTGTTSRSQCLLMFINQIRMKIGVMFGSPETTSGGNALKFYASVRLDIRRIGAIKEAAAG 243

Query: 242 --KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
             + ++ GN+TRVKVVKNKMA PF++VEFDI+YG+GIS  G++IDL  +ASI++KSG+WF
Sbjct: 244 GKEPAVVGNRTRVKVVKNKMAPPFREVEFDILYGQGISHSGDVIDLATEASIIEKSGSWF 303

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           SF+G+R+GQGREN++ +L ++  + + IES++    G+
Sbjct: 304 SFQGERIGQGRENARTYLEQHPAVLDKIESMVLAKHGI 341


>gi|262370234|ref|ZP_06063560.1| recombinase A [Acinetobacter johnsonii SH046]
 gi|262314576|gb|EEY95617.1| recombinase A [Acinetobacter johnsonii SH046]
          Length = 347

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 217/323 (67%), Positives = 270/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AALSQI++ +GK  +M+LG   +  + +E VS+GSL LDIALGIGG PKGRIV
Sbjct: 4   NKSKALNAALSQIEKQFGKNTVMRLGD--NTVQAVEAVSTGSLTLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ L  IA+ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD G
Sbjct: 62  EIYGPESSGKTTMTLQAIAECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IV+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T + 
Sbjct: 122 EQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNA 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRRVG +K+ D I G++T
Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGQVKEGDEIVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNKMA PF++  F I+YG+G++  GEL+DL V+  IV K+GAW+S++G ++GQG+
Sbjct: 242 KVKVVKNKMAPPFREALFQILYGKGVNHLGELVDLAVQQEIVQKAGAWYSYQGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N    L EN ++AE IE ++R+
Sbjct: 302 NNVIRHLEENPQLAETIEKIIRE 324


>gi|157326921|gb|ABV44573.1| RecA [Burkholderia cenocepacia]
          Length = 313

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/314 (70%), Positives = 273/314 (86%), Gaps = 1/314 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESLLRQNAG 336
           IA  IE+ +R++ G
Sbjct: 300 IAREIENRIRESLG 313


>gi|170664160|gb|ACB28499.1| RecA [Burkholderia ambifaria]
 gi|170664162|gb|ACB28500.1| RecA [Burkholderia ambifaria]
 gi|170664164|gb|ACB28501.1| RecA [Burkholderia ambifaria]
 gi|170664166|gb|ACB28502.1| RecA [Burkholderia ambifaria]
 gi|170664168|gb|ACB28503.1| RecA [Burkholderia ambifaria]
 gi|170664170|gb|ACB28504.1| RecA [Burkholderia ambifaria]
 gi|170664172|gb|ACB28505.1| RecA [Burkholderia ambifaria]
          Length = 310

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 218/311 (70%), Positives = 272/311 (87%), Gaps = 1/311 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            +A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGL 337
           IE+ +R++ G+
Sbjct: 300 IENRIRESLGV 310


>gi|308212786|gb|ADO21621.1| RecA [Burkholderia arboris]
 gi|308212788|gb|ADO21622.1| RecA [Burkholderia arboris]
          Length = 313

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/314 (70%), Positives = 273/314 (86%), Gaps = 1/314 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI
Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299

Query: 324 AENIESLLRQNAGL 337
           A  IE+ +R++ G+
Sbjct: 300 AREIENRIRESLGV 313


>gi|302037041|ref|YP_003797363.1| recombinase recA [Candidatus Nitrospira defluvii]
 gi|300605105|emb|CBK41438.1| Recombinase RecA [Candidatus Nitrospira defluvii]
          Length = 370

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/327 (67%), Positives = 276/327 (84%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL+ AL+QI++ YGKGA+M+LG+     + +  +SSGSLGLDIALG+GGFP+GR++
Sbjct: 6   EKKRALDLALAQIEKQYGKGAVMKLGADDRPAD-VPAISSGSLGLDIALGVGGFPRGRVI 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL LH IA++QK GG  AF+DAEHALD  YA+KLGV   +LL+SQPDTG
Sbjct: 65  EIFGPESSGKTTLTLHAIAEAQKAGGVAAFIDAEHALDLTYAKKLGVQTDDLLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+D+IV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 125 EQALEIAETLVRSGAIDVIVVDSVAALVPRAEIEGEMGDSHMGLQARLMSQALRKLTAAI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S+  L+FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+ SIKD   +TG++ 
Sbjct: 185 SKSQTTLIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIESIKDGQDVTGSRV 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PF+Q EFDIM+ EGIS  GEL+D+GV+  +V+K+GAW+S+KG+RLGQGR
Sbjct: 245 RVKVVKNKMAPPFRQAEFDIMFAEGISKSGELVDIGVEKRVVEKAGAWYSYKGERLGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           E  + FL+ N  IA+ IE  +R  AGL
Sbjct: 305 EAVRDFLKTNPAIAKEIEGKVRDLAGL 331


>gi|304310615|ref|YP_003810213.1| RecA/RadA recombinase [gamma proteobacterium HdN1]
 gi|301796348|emb|CBL44556.1| RecA/RadA recombinase [gamma proteobacterium HdN1]
          Length = 343

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 221/344 (64%), Positives = 284/344 (82%), Gaps = 4/344 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL+QI+R +GKG+IM++G Q  + + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKRKALGAALAQIERQFGKGSIMRMGDQ--LQQAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G  CAFVDAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAQAQKQGAVCAFVDAEHALDPIYANKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+IV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 122 EQALEITDMLVRSNAVDVIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGNV 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GS+K  + +TG++T
Sbjct: 182 KQANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSVKQGEEVTGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE++DLGV   ++DKSGAW+++KG ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQTEFQILYGKGIYREGEILDLGVACGVIDKSGAWYAYKGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
            N+  FL E +E+++ IE  +R +  L+A  L+ + +    +DA
Sbjct: 302 ANAAKFLEEKVEVSQEIEQQIRTS--LMASELVSKSSEPELEDA 343


>gi|56459851|ref|YP_155132.1| RecA recombinase [Idiomarina loihiensis L2TR]
 gi|76363333|sp|Q5QUB8|RECA_IDILO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|56178861|gb|AAV81583.1| RecA recombinase [Idiomarina loihiensis L2TR]
          Length = 372

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 226/342 (66%), Positives = 281/342 (82%), Gaps = 9/342 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+AAL QI+R +GKG+IM+LG   ++   I+ VS+GSLGLDIALGIGG P GR+V
Sbjct: 4   DRQKALDAALGQIERQFGKGSIMRLGDNQTL--DIDSVSTGSLGLDIALGIGGLPFGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ L  IA++QK G TCAFVDAEHALD IYA  LGV++ +LLISQPDTG
Sbjct: 62  EIYGPESSGKTTMTLEVIAEAQKMGKTCAFVDAEHALDPIYAEALGVNVDDLLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGAVDI+++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLTS+I
Sbjct: 122 EQALEICDMLVRSGAVDIVIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTSNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  + +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR G++K+ D + GN+T
Sbjct: 182 KKSNTMCIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGALKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK+  F I+YG+GIS  GELIDLGVK  +VDK+GAW+S+ G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFKEAHFQILYGKGISKEGELIDLGVKHKMVDKAGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
            NS  FL++N +IA+ +E  +R+        LL +P   TK+
Sbjct: 302 ANSMKFLQDNPKIADELEGRIRE-------LLLSKPEKRTKE 336


>gi|296803088|gb|ADH51620.1| DNA recombinase [Burkholderia cepacia]
          Length = 311

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/312 (70%), Positives = 272/312 (87%), Gaps = 1/312 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGLV 338
           IE+ +R++ G+V
Sbjct: 300 IENRIRESLGVV 311


>gi|157326903|gb|ABV44564.1| RecA [Burkholderia cenocepacia]
          Length = 317

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/316 (69%), Positives = 274/316 (86%), Gaps = 1/316 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+YGE IS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI
Sbjct: 240 REAIFDILYGESISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299

Query: 324 AENIESLLRQNAGLVA 339
           A  IE+ +R++ G+V+
Sbjct: 300 AREIENRIRESLGVVS 315


>gi|319940910|ref|ZP_08015248.1| recA [Sutterella wadsworthensis 3_1_45B]
 gi|319805626|gb|EFW02414.1| recA [Sutterella wadsworthensis 3_1_45B]
          Length = 381

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/356 (63%), Positives = 294/356 (82%), Gaps = 8/356 (2%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           RKE +  ++ KAL AAL+ I++ +GKGAIM++ + G   + IEVVS+GSLGLD+ALG+GG
Sbjct: 13  RKEGD--ERKKALNAALASIEKQFGKGAIMRM-ADGVEQQNIEVVSTGSLGLDLALGVGG 69

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P+GRIVEIYGPESSGKTTL+L  IA+ QK GGTCAFVDAEHALD  YA++LGV++  LL
Sbjct: 70  LPRGRIVEIYGPESSGKTTLSLQVIAEMQKIGGTCAFVDAEHALDIQYAQRLGVNVPELL 129

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPD GEQALEI D LVRSG++D+IV+DSVAALTPR+EIEGDMG++LPG+QARLMSQAL
Sbjct: 130 LSQPDAGEQALEIVDALVRSGSIDLIVVDSVAALTPRSEIEGDMGDALPGLQARLMSQAL 189

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT+S+SR+KC+++FINQ+RMKIG  +G+PETTTGGNALKFYSSVRLDIRRVG+IK  D
Sbjct: 190 RKLTTSVSRTKCLVIFINQIRMKIG-GYGNPETTTGGNALKFYSSVRLDIRRVGAIKRAD 248

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+TRVKVVKNK+A PFKQV+FDI+YGEGIS  GE+ID+G    +++KSGAW+S+ G
Sbjct: 249 EVIGNETRVKVVKNKVAPPFKQVQFDILYGEGISRLGEIIDIGTDLKVLEKSGAWYSYDG 308

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLL----QEPAINTKDDAD 355
           +RLGQG+E  +  L EN ++A+ IE  +R+  G+   S+     + P ++  +D+D
Sbjct: 309 RRLGQGKEKVRDLLAENPDLAKEIEGKIRELKGVHISSISAVDDEMPDMDQAEDSD 364


>gi|308212732|gb|ADO21594.1| RecA [Burkholderia arboris]
 gi|308212734|gb|ADO21595.1| RecA [Burkholderia arboris]
 gi|308212736|gb|ADO21596.1| RecA [Burkholderia arboris]
 gi|308212738|gb|ADO21597.1| RecA [Burkholderia arboris]
 gi|308212740|gb|ADO21598.1| RecA [Burkholderia arboris]
 gi|308212742|gb|ADO21599.1| RecA [Burkholderia arboris]
 gi|308212744|gb|ADO21600.1| RecA [Burkholderia arboris]
 gi|308212746|gb|ADO21601.1| RecA [Burkholderia arboris]
 gi|308212748|gb|ADO21602.1| RecA [Burkholderia arboris]
 gi|308212750|gb|ADO21603.1| RecA [Burkholderia arboris]
 gi|308212752|gb|ADO21604.1| RecA [Burkholderia arboris]
 gi|308212754|gb|ADO21605.1| RecA [Burkholderia arboris]
 gi|308212756|gb|ADO21606.1| RecA [Burkholderia arboris]
 gi|308212758|gb|ADO21607.1| RecA [Burkholderia arboris]
 gi|308212760|gb|ADO21608.1| RecA [Burkholderia arboris]
 gi|308212762|gb|ADO21609.1| RecA [Burkholderia arboris]
 gi|308212764|gb|ADO21610.1| RecA [Burkholderia arboris]
 gi|308212766|gb|ADO21611.1| RecA [Burkholderia arboris]
 gi|308212768|gb|ADO21612.1| RecA [Burkholderia arboris]
 gi|308212770|gb|ADO21613.1| RecA [Burkholderia arboris]
 gi|308212772|gb|ADO21614.1| RecA [Burkholderia arboris]
 gi|308212774|gb|ADO21615.1| RecA [Burkholderia arboris]
 gi|308212776|gb|ADO21616.1| RecA [Burkholderia arboris]
 gi|308212778|gb|ADO21617.1| RecA [Burkholderia arboris]
 gi|308212780|gb|ADO21618.1| RecA [Burkholderia arboris]
 gi|308212782|gb|ADO21619.1| RecA [Burkholderia arboris]
          Length = 313

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/312 (70%), Positives = 272/312 (87%), Gaps = 1/312 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI
Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  
Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  I
Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299

Query: 328 ESLLRQNAGLVA 339
           E+ +R++ G+V+
Sbjct: 300 ENRIRESLGVVS 311


>gi|254481187|ref|ZP_05094432.1| protein RecA [marine gamma proteobacterium HTCC2148]
 gi|214038350|gb|EEB79012.1| protein RecA [marine gamma proteobacterium HTCC2148]
          Length = 347

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 216/324 (66%), Positives = 271/324 (83%), Gaps = 2/324 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AAL+QI+R +GKG +M++G      E I  +S+GSLGLDIALGIGG PKGRI 
Sbjct: 4   NKEKALDAALTQIERQFGKGTVMRMGD--VKHEAIPSISTGSLGLDIALGIGGLPKGRIC 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK GGT AF+DAEHALD  YA KLGV +  L++SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAEAQKAGGTAAFIDAEHALDPQYAEKLGVKMDELIMSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALE+ +MLVRSGAVD++VIDSVAALTP+AEIEGDMG+S  G+QARL+SQA+RKLT++I
Sbjct: 122 EQALEVAEMLVRSGAVDVLVIDSVAALTPKAEIEGDMGDSHVGLQARLLSQAMRKLTAAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++KD D + GN+T
Sbjct: 182 KQTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKDGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EF IMYG+GI   GE+ID GVK ++VDKSGAW+++KG ++GQG+
Sbjct: 242 RVKVVKNKVSPPFKQAEFQIMYGKGIYHMGEVIDWGVKLNLVDKSGAWYAYKGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQN 334
            N+  FL  N  +A  IE+ +R+ 
Sbjct: 302 ANASKFLEANPAVANEIEAAIREQ 325


>gi|152977946|ref|YP_001343575.1| recombinase A [Actinobacillus succinogenes 130Z]
 gi|150839669|gb|ABR73640.1| recA protein [Actinobacillus succinogenes 130Z]
          Length = 367

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 233/357 (65%), Positives = 285/357 (79%), Gaps = 7/357 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL QI++ +GKGAIM+LG +  +   +E VS+GS+GLD+ALGIGG P GRIV
Sbjct: 14  EKSKALAAALGQIEKQFGKGAIMKLGDRPDM--DVESVSTGSIGLDVALGIGGLPMGRIV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IAQ+QK G  CAF+DAEHALD IYA KLGVD+K L ISQPD G
Sbjct: 72  EIFGPESSGKTTLTLSVIAQAQKAGKVCAFIDAEHALDPIYAAKLGVDVKELFISQPDNG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGA+D+I++DSVAALTP+AEIEGDMG++  G+QARLMSQALRKLT+ I
Sbjct: 132 EQALEICDALVRSGAIDVIIVDSVAALTPKAEIEGDMGDAHVGLQARLMSQALRKLTAQI 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S C++VFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GS+K  D I GN+T
Sbjct: 192 KSSNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSVKAGDEIIGNET 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PF+ V+F IMYGEGIS  GELI+LGVK  +V KSGAWF+++GQ++GQG+
Sbjct: 252 RVKVVKNKLAAPFRTVDFQIMYGEGISKNGELIELGVKQKLVQKSGAWFAYEGQKIGQGK 311

Query: 311 ENSKIFLRENIEIAENIESLLR----QNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N+  +L +N E A  +ES +R    +N      + L     NT+ D D +DT N E
Sbjct: 312 ANAMKWLADNPEKAAELESKIRAEFQENPEKTLIAELDGSGKNTELD-DSEDTVNFE 367


>gi|296837429|gb|ADH59573.1| DNA recombinase [Burkholderia contaminans]
          Length = 310

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/311 (70%), Positives = 271/311 (87%), Gaps = 1/311 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI
Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  
Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  I
Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299

Query: 328 ESLLRQNAGLV 338
           E+ +R++ G+V
Sbjct: 300 ENRIRESLGVV 310


>gi|296803054|gb|ADH51603.1| DNA recombinase [Burkholderia contaminans]
          Length = 311

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/311 (70%), Positives = 271/311 (87%), Gaps = 1/311 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI
Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  
Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  I
Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299

Query: 328 ESLLRQNAGLV 338
           E+ +R++ G+V
Sbjct: 300 ENRIRESLGVV 310


>gi|170664132|gb|ACB28485.1| RecA [Burkholderia cenocepacia]
 gi|170664134|gb|ACB28486.1| RecA [Burkholderia cenocepacia]
 gi|170664136|gb|ACB28487.1| RecA [Burkholderia cenocepacia]
 gi|170664138|gb|ACB28488.1| RecA [Burkholderia cenocepacia]
 gi|170664140|gb|ACB28489.1| RecA [Burkholderia cenocepacia]
 gi|170664142|gb|ACB28490.1| RecA [Burkholderia cenocepacia]
          Length = 310

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/311 (70%), Positives = 271/311 (87%), Gaps = 1/311 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGL 337
           IE+ +R++ G+
Sbjct: 300 IENRIRESLGV 310


>gi|221133348|ref|ZP_03559653.1| recA protein [Glaciecola sp. HTCC2999]
          Length = 344

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 221/322 (68%), Positives = 273/322 (84%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K++AL AAL QI++ +GKGAIM+LG   ++   IE VS+GSL +DIALGIGG P GR+V
Sbjct: 5   NKTRALSAALGQIEKQFGKGAIMRLGDNQAM--DIESVSTGSLSIDIALGIGGLPCGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD +YA  LGV++  LL+SQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAEAQKVGKTCAFVDAEHALDPVYAEALGVNIDELLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGAVD++++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT +I
Sbjct: 123 EQALEICDMLVRSGAVDVVIVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTGNI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+R+KIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IKD D I GN+T
Sbjct: 183 KRSNTLVIFINQIRLKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKDGDEIVGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF IMYG+GIS   ELIDLGVK  +V+K+GAW+S+ G+R+GQG+
Sbjct: 243 RVKVVKNKVAPPFKQAEFQIMYGQGISKEAELIDLGVKQKLVEKAGAWYSYNGERIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N   +L+E+ E+A +IE+ +R
Sbjct: 303 ANVVKYLKEHPEMANDIEARIR 324


>gi|296803086|gb|ADH51619.1| DNA recombinase [Burkholderia cenocepacia]
          Length = 316

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/312 (70%), Positives = 272/312 (87%), Gaps = 1/312 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGLV 338
           IE+ +R++ G+V
Sbjct: 300 IENRIRESLGVV 311


>gi|296803092|gb|ADH51622.1| DNA recombinase [Burkholderia contaminans]
          Length = 312

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/312 (70%), Positives = 272/312 (87%), Gaps = 1/312 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESLLRQN 334
           IA  IE+ +R++
Sbjct: 300 IAREIENRIRES 311


>gi|319779603|ref|YP_004130516.1| RecA protein [Taylorella equigenitalis MCE9]
 gi|317109627|gb|ADU92373.1| RecA protein [Taylorella equigenitalis MCE9]
          Length = 356

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/332 (66%), Positives = 275/332 (82%), Gaps = 1/332 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+ G    +   I+V S+GSL LDIALG+GG P+GR++EI+GPESSGKT
Sbjct: 19  QIEKQFGKGSIMRYGDS-EVEHDIQVFSTGSLSLDIALGVGGLPRGRVIEIFGPESSGKT 77

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGTCAF+DAEHALD  YA KLGV+L  LLISQPD+GEQALEITD LV
Sbjct: 78  TLTLQAIAEMQKLGGTCAFIDAEHALDVQYAAKLGVNLDELLISQPDSGEQALEITDALV 137

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG++D+IV+DSVAAL P+AE+EGDMG+SLPG+QARLMSQALRKLT+SI R+ C ++FIN
Sbjct: 138 RSGSIDLIVVDSVAALVPKAELEGDMGDSLPGLQARLMSQALRKLTASIKRTNCTVIFIN 197

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A 
Sbjct: 198 QIRMKIGVMFGSPETTTGGNALKFYTSVRLDIRRIGSIKKGDEVIGNETRVKVVKNKVAP 257

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PFKQVEFDIMYG GIS  GE+IDLGVKA IVDK+G+WFS+ G ++GQG++N + +L+ N 
Sbjct: 258 PFKQVEFDIMYGTGISREGEIIDLGVKAGIVDKAGSWFSYNGNKIGQGKDNVREYLKSNP 317

Query: 322 EIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           E+A+ IE  +R+  G+    +  + + +  DD
Sbjct: 318 ELAQEIEGKIREAMGVGGSDIFTDMSHSDSDD 349


>gi|148887233|emb|CAM12783.1| recombinase A [Ochrobactrum pseudogrignonense]
          Length = 267

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 216/263 (82%), Positives = 245/263 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE V +GSL LDIALG+GG PKGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAE
Sbjct: 5   IETVPTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAE 64

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIE
Sbjct: 65  HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIE 124

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+SLPG+QARLMSQALRKLT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALK
Sbjct: 125 GEMGDSLPGLQARLMSQALRKLTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALK 184

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR+GSIK++D + GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+D
Sbjct: 185 FYASVRLDIRRIGSIKERDEVVGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVD 244

Query: 285 LGVKASIVDKSGAWFSFKGQRLG 307
           LGVKA +V+KSGAWFS+  QRLG
Sbjct: 245 LGVKAGVVEKSGAWFSYNSQRLG 267


>gi|296837431|gb|ADH59574.1| DNA recombinase [Burkholderia contaminans]
          Length = 311

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/311 (70%), Positives = 271/311 (87%), Gaps = 1/311 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI
Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  
Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  I
Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299

Query: 328 ESLLRQNAGLV 338
           E+ +R++ G+V
Sbjct: 300 ENRIRESLGVV 310


>gi|296837379|gb|ADH59548.1| DNA recombinase [Burkholderia contaminans]
          Length = 312

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/311 (70%), Positives = 271/311 (87%), Gaps = 1/311 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 3   FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 61

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 62  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 121

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 122 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 181

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 182 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 241

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 242 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 301

Query: 327 IESLLRQNAGL 337
           IE+ +R++ G+
Sbjct: 302 IENRIRESLGV 312


>gi|296837377|gb|ADH59547.1| DNA recombinase [Burkholderia contaminans]
          Length = 310

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/311 (70%), Positives = 271/311 (87%), Gaps = 1/311 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGL 337
           IE+ +R++ G+
Sbjct: 300 IENRIRESLGV 310


>gi|325577038|ref|ZP_08147579.1| recombination protein A [Haemophilus parainfluenzae ATCC 33392]
 gi|325160894|gb|EGC73014.1| recombination protein A [Haemophilus parainfluenzae ATCC 33392]
          Length = 351

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/349 (65%), Positives = 283/349 (81%), Gaps = 6/349 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E VS+GSLGLD+ALGIGG P GRIV
Sbjct: 6   EKQKALAAALGQIEKQFGKGSIMKLGDTQAL--DVESVSTGSLGLDVALGIGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IAQ+QK G TCAF+DAEHALD IYA KLGVD+K LL+SQPD G
Sbjct: 64  EIFGPESSGKTTLTLSVIAQAQKVGKTCAFIDAEHALDPIYAAKLGVDVKELLVSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVD++++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT  I
Sbjct: 124 EQALEICDALVRSGAVDVVIVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLTGQI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR GS+KD D + GN+T
Sbjct: 184 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKDGDEVIGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PF+QV+F I+YGEGIS  GELI+LGVK  +V+KSGAW+++ G+++GQG+
Sbjct: 244 RVKVVKNKLAAPFRQVDFQILYGEGISKAGELIELGVKHKLVEKSGAWYAYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA--DSLLQEPAINTKDDADKD 357
            N+  +L EN   ++ +E+ LR  A LVA  +  L        DDA+ D
Sbjct: 304 ANAMKWLHENPAKSDELEAKLR--AELVANPEQALMADIEQPTDDAESD 350


>gi|70904860|gb|AAZ14009.1| RecA [Burkholderia multivorans]
          Length = 318

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/317 (69%), Positives = 275/317 (86%), Gaps = 1/317 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GK +IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKESIMRMGD-GDAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESLLRQNAGLVA 339
           IA  IE+ +R++ G+ A
Sbjct: 300 IAREIENRIRESLGVAA 316


>gi|296802994|gb|ADH51573.1| DNA recombinase [Burkholderia multivorans]
          Length = 311

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/311 (70%), Positives = 272/311 (87%), Gaps = 1/311 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGL 337
           IE+ +R++ G+
Sbjct: 300 IENRIRESLGV 310


>gi|296802990|gb|ADH51571.1| DNA recombinase [Burkholderia contaminans]
 gi|296803026|gb|ADH51589.1| DNA recombinase [Burkholderia contaminans]
 gi|296803038|gb|ADH51595.1| DNA recombinase [Burkholderia contaminans]
 gi|296803040|gb|ADH51596.1| DNA recombinase [Burkholderia contaminans]
 gi|296803046|gb|ADH51599.1| DNA recombinase [Burkholderia contaminans]
 gi|296803060|gb|ADH51606.1| DNA recombinase [Burkholderia contaminans]
 gi|296837357|gb|ADH59537.1| DNA recombinase [Burkholderia contaminans]
          Length = 310

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/311 (70%), Positives = 271/311 (87%), Gaps = 1/311 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGL 337
           IE+ +R++ G+
Sbjct: 300 IENRIRESLGV 310


>gi|296802986|gb|ADH51569.1| DNA recombinase [Burkholderia cepacia]
          Length = 312

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/312 (70%), Positives = 272/312 (87%), Gaps = 1/312 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 2   FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 60

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 61  VIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 120

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 121 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 180

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 181 IGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 240

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 241 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 300

Query: 327 IESLLRQNAGLV 338
           IE+ +R++ G+V
Sbjct: 301 IENRIRESLGVV 312


>gi|119504841|ref|ZP_01626919.1| recA protein [marine gamma proteobacterium HTCC2080]
 gi|119459446|gb|EAW40543.1| recA protein [marine gamma proteobacterium HTCC2080]
          Length = 347

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 214/324 (66%), Positives = 273/324 (84%), Gaps = 2/324 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K+KAL+AA+SQI+R +GKG +M++G Q  +   I  +S+GSLGLDIALGIGG PKGRI 
Sbjct: 4   NKAKALDAAMSQIERQFGKGTVMRMGDQERV--AIPSISTGSLGLDIALGIGGLPKGRIC 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ L  IA++QK GGT AF+DAEHALD  YA +LGV + ++++SQPDTG
Sbjct: 62  EIYGPESSGKTTMTLQVIAEAQKKGGTAAFIDAEHALDPQYAERLGVQVDDMIVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALE+ +MLVRSGAVD++VIDSVAALTP+AEIEG+MG+S  G+QARL+SQA+RKLT +I
Sbjct: 122 EQALEVAEMLVRSGAVDVLVIDSVAALTPKAEIEGEMGQSHVGLQARLLSQAMRKLTGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++KD D + GN+T
Sbjct: 182 KQTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EF IMYGEGI   GE+ID GVK ++VDKSGAW+++KG ++GQG+
Sbjct: 242 RVKVVKNKVSPPFKQAEFQIMYGEGIYHMGEVIDWGVKLNLVDKSGAWYAYKGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQN 334
            N+  FL E+ +IA  IES +R  
Sbjct: 302 ANASRFLEEHPDIANEIESQIRHQ 325


>gi|296803028|gb|ADH51590.1| DNA recombinase [Burkholderia contaminans]
 gi|296803034|gb|ADH51593.1| DNA recombinase [Burkholderia contaminans]
          Length = 311

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/311 (70%), Positives = 271/311 (87%), Gaps = 1/311 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 2   FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 60

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 61  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 120

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 121 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 180

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 181 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 240

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 241 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 300

Query: 327 IESLLRQNAGL 337
           IE+ +R++ G+
Sbjct: 301 IENRIRESLGV 311


>gi|296803090|gb|ADH51621.1| DNA recombinase [Burkholderia contaminans]
          Length = 314

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/312 (70%), Positives = 271/312 (86%), Gaps = 1/312 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 3   FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 61

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 62  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 121

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 122 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 181

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 182 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 241

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 242 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 301

Query: 327 IESLLRQNAGLV 338
           IE+ +R+  G+V
Sbjct: 302 IENRIRELLGVV 313


>gi|157326935|gb|ABV44580.1| RecA [Burkholderia multivorans]
 gi|157326941|gb|ABV44583.1| RecA [Burkholderia multivorans]
 gi|157326943|gb|ABV44584.1| RecA [Burkholderia multivorans]
 gi|157326945|gb|ABV44585.1| RecA [Burkholderia multivorans]
          Length = 312

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/313 (69%), Positives = 273/313 (87%), Gaps = 1/313 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI
Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299

Query: 324 AENIESLLRQNAG 336
           A  IE+ +R++ G
Sbjct: 300 AREIENRIRESLG 312


>gi|150171062|emb|CAO01514.1| DNA recombination protein [Burkholderia seminalis]
          Length = 330

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 218/316 (68%), Positives = 274/316 (86%), Gaps = 1/316 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 6   EKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 64

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 65  TLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 124

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 125 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 184

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 185 RMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 244

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI
Sbjct: 245 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 304

Query: 324 AENIESLLRQNAGLVA 339
           A  IE+ +R++ G+ +
Sbjct: 305 AREIENRIRESLGVAS 320


>gi|261866979|ref|YP_003254901.1| recombinase A [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|293391311|ref|ZP_06635645.1| protein RecA [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|261412311|gb|ACX81682.1| protein RecA [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|290951845|gb|EFE01964.1| protein RecA [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 352

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 224/336 (66%), Positives = 277/336 (82%), Gaps = 9/336 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AAL QI++ +GKGAIM+LG    +   IE +S+GS GLD+ALGIGG P GRIV
Sbjct: 6   EKQKALDAALGQIEKQFGKGAIMKLGDSQKL--DIEAISTGSFGLDLALGIGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA++QKTG TCAF+DAEHALD IYA KLGVD+K LL+SQPD G
Sbjct: 64  EIFGPESSGKTTLTLSVIAEAQKTGKTCAFIDAEHALDPIYASKLGVDVKELLVSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLTS I
Sbjct: 124 EQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTSQI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRRVGSIK+ D + GN+T
Sbjct: 184 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRVGSIKEGDEVIGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+QV+F I+YGEGIS   ELI+LGVK  ++ K+GAW++++ +++GQG+
Sbjct: 244 RVKVVKNKVAPPFRQVDFQILYGEGISKESELIELGVKHKLISKAGAWYAYQNEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
            N+  +L++N E A+ IES LR       D LL  P
Sbjct: 304 TNAMKWLKDNPEQAKFIESTLR-------DELLAHP 332


>gi|254284267|ref|ZP_04959235.1| protein RecA [gamma proteobacterium NOR51-B]
 gi|219680470|gb|EED36819.1| protein RecA [gamma proteobacterium NOR51-B]
          Length = 354

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 218/324 (67%), Positives = 273/324 (84%), Gaps = 2/324 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AALSQI+R +GKG +M++G Q  +   I  +S+GSLGLDIALGIGG PKGRI 
Sbjct: 4   NKQKALDAALSQIERQFGKGTVMRMGDQERV--AIPSISTGSLGLDIALGIGGLPKGRIC 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK GGT AFVDAEHALD  YA KLGV + +L++SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAEAQKAGGTAAFVDAEHALDPQYAEKLGVQVDDLIMSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALE+++MLVRSGAVD++VIDSVAALTP+AEIEG+MG+S  G+QARL+SQA+RKLT +I
Sbjct: 122 EQALEVSEMLVRSGAVDVLVIDSVAALTPKAEIEGEMGDSHVGLQARLLSQAMRKLTGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++KD D + GN+T
Sbjct: 182 KQTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKDGDEVIGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EF IMYG GI   GE+ID GVK ++VDKSGAW+++KG ++GQG+
Sbjct: 242 RVKVVKNKVSPPFKQAEFQIMYGAGIYRLGEVIDWGVKLNLVDKSGAWYAYKGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQN 334
            N+  FL+EN  I + IE+ +R  
Sbjct: 302 ANAARFLQENPRIGDEIENQIRHQ 325


>gi|296837359|gb|ADH59538.1| DNA recombinase [Burkholderia cenocepacia]
          Length = 312

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/312 (70%), Positives = 272/312 (87%), Gaps = 1/312 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESLLRQN 334
           IA  IE+ +R++
Sbjct: 300 IAREIENRIRES 311


>gi|254427618|ref|ZP_05041325.1| protein RecA [Alcanivorax sp. DG881]
 gi|196193787|gb|EDX88746.1| protein RecA [Alcanivorax sp. DG881]
          Length = 344

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 216/322 (67%), Positives = 276/322 (85%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL AALSQI+R +GKG++M++G +    E +  +S+GSLGLD+ALGIGG PKGRIV
Sbjct: 3   DKGKALSAALSQIERQFGKGSVMRMGDRKR--ERMPSISTGSLGLDVALGIGGLPKGRIV 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +L++SQPDTG
Sbjct: 61  EIYGPESSGKTTLTLSVIAQAQKKGATCAFVDAEHALDPDYAEKLGVNVDDLIVSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSGAVD++++DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T ++
Sbjct: 121 EQALEITDMLVRSGAVDVVIVDSVAALVPKAEIEGEMGDTHVGLQARLMSQALRKITGNV 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  ++VFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G++K  D +TGN+T
Sbjct: 181 KNANTLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAVKQGDEVTGNET 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF+Q EF I+YG+GI+  GE++DLGV+  +VDKSGAW+++KG ++GQG+
Sbjct: 241 RVKVVKNKVSPPFRQAEFQILYGQGINQLGEVLDLGVQQGLVDKSGAWYAYKGDKIGQGK 300

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           +N+  +LREN  IAE IE+ +R
Sbjct: 301 QNACEYLRENPAIAEEIETEIR 322


>gi|50084563|ref|YP_046073.1| recombinase A [Acinetobacter sp. ADP1]
 gi|1172879|sp|P42438|RECA_ACIAD RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|440089|gb|AAC27115.1| RecA [Acinetobacter sp. ADP1]
 gi|49530539|emb|CAG68251.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Acinetobacter sp. ADP1]
          Length = 349

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 215/323 (66%), Positives = 273/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL+AALSQI++ +GK  +M+LG   +  + +E VS+GSL LDIALGIGG PKGRIV
Sbjct: 4   NKSKALQAALSQIEKQFGKNTVMRLGD--NTVQAVEAVSTGSLTLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ L  IAQ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD G
Sbjct: 62  EIYGPESSGKTTMTLQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T + 
Sbjct: 122 EQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNA 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G +K+ D I G++T
Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIIGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNKMA PF++  F I+YG+G++  GEL+DL V+ +IV K+GAW+S++G ++GQG+
Sbjct: 242 KVKVVKNKMAPPFREAIFQILYGKGVNQLGELVDLAVQQNIVQKAGAWYSYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N   +L EN +I+  IE+++R+
Sbjct: 302 NNVIRYLEENPQISTEIEAVIRE 324


>gi|157326929|gb|ABV44577.1| RecA [Burkholderia multivorans]
          Length = 309

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/308 (71%), Positives = 270/308 (87%), Gaps = 1/308 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           +QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGK
Sbjct: 1   AQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK 59

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD L
Sbjct: 60  TTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDAL 119

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FI
Sbjct: 120 VRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFI 179

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++
Sbjct: 180 NQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVS 239

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
            PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN
Sbjct: 240 PPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLREN 299

Query: 321 IEIAENIE 328
            EIA  IE
Sbjct: 300 PEIAREIE 307


>gi|169633342|ref|YP_001707078.1| recombinase A [Acinetobacter baumannii SDF]
 gi|169795694|ref|YP_001713487.1| recombinase A [Acinetobacter baumannii AYE]
 gi|184158405|ref|YP_001846744.1| recombinase A [Acinetobacter baumannii ACICU]
 gi|213158361|ref|YP_002319659.1| DNA strand exchange and recombination protein RecA [Acinetobacter
           baumannii AB0057]
 gi|215483180|ref|YP_002325387.1| protein RecA [Acinetobacter baumannii AB307-0294]
 gi|229577096|ref|YP_001084991.2| recombinase A [Acinetobacter baumannii ATCC 17978]
 gi|239501635|ref|ZP_04660945.1| recombinase A [Acinetobacter baumannii AB900]
 gi|260554756|ref|ZP_05826977.1| recA protein [Acinetobacter baumannii ATCC 19606]
 gi|294838602|ref|ZP_06783285.1| recombinase A [Acinetobacter sp. 6013113]
 gi|294842278|ref|ZP_06786961.1| recombinase A [Acinetobacter sp. 6014059]
 gi|294859590|ref|ZP_06797359.1| recombinase A [Acinetobacter sp. 6013150]
 gi|301348114|ref|ZP_07228855.1| recombinase A [Acinetobacter baumannii AB056]
 gi|301512103|ref|ZP_07237340.1| recombinase A [Acinetobacter baumannii AB058]
 gi|301597370|ref|ZP_07242378.1| recombinase A [Acinetobacter baumannii AB059]
 gi|226737747|sp|B7H1V4|RECA_ACIB3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226737748|sp|B7I9U0|RECA_ACIB5 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238685519|sp|A3M645|RECA_ACIBT RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238688039|sp|B0V6E0|RECA_ACIBY RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238688140|sp|B0VMV7|RECA_ACIBS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238691026|sp|B2I316|RECA_ACIBC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|169148621|emb|CAM86487.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Acinetobacter baumannii AYE]
 gi|169152134|emb|CAP01033.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Acinetobacter baumannii]
 gi|183209999|gb|ACC57397.1| RecA/RadA recombinase [Acinetobacter baumannii ACICU]
 gi|193077556|gb|ABO12389.2| DNA strand exchange and recombination protein [Acinetobacter
           baumannii ATCC 17978]
 gi|213057521|gb|ACJ42423.1| DNA strand exchange and recombination protein RecA [Acinetobacter
           baumannii AB0057]
 gi|213987860|gb|ACJ58159.1| protein RecA [Acinetobacter baumannii AB307-0294]
 gi|260411298|gb|EEX04595.1| recA protein [Acinetobacter baumannii ATCC 19606]
 gi|322508729|gb|ADX04183.1| recA [Acinetobacter baumannii 1656-2]
 gi|323518334|gb|ADX92715.1| recombinase A [Acinetobacter baumannii TCDC-AB0715]
          Length = 349

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 216/323 (66%), Positives = 270/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL+AALSQI++ +GK  +M+LG   +  + +E VS+GSL LDIALGIGG PKGRI+
Sbjct: 4   NKSKALQAALSQIEKQFGKNTVMRLGD--NTVQAVEAVSTGSLTLDIALGIGGLPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ L  IAQ QK+GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD G
Sbjct: 62  EIYGPESSGKTTMTLQAIAQCQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T + 
Sbjct: 122 EQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNA 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G +K+ D I G++T
Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNKMA PFK+  F I+YG+G +  GEL+DL V+  IV K+GAW+S++G ++GQG+
Sbjct: 242 KVKVVKNKMAPPFKEAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N   +  EN +IAE IE  +R+
Sbjct: 302 NNVIRYFEENTQIAEEIERNIRE 324


>gi|296803044|gb|ADH51598.1| DNA recombinase [Burkholderia contaminans]
          Length = 309

 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/310 (70%), Positives = 270/310 (87%), Gaps = 1/310 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAG 336
           IE+ +R++ G
Sbjct: 300 IENRIRESLG 309


>gi|296803014|gb|ADH51583.1| DNA recombinase [Burkholderia contaminans]
          Length = 314

 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/312 (70%), Positives = 271/312 (86%), Gaps = 1/312 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 2   FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 60

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 61  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 120

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 121 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 180

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 181 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 240

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGE IS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 241 IFDILYGESISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 300

Query: 327 IESLLRQNAGLV 338
           IE+ +R++ G+V
Sbjct: 301 IENRIRESLGVV 312


>gi|296803066|gb|ADH51609.1| DNA recombinase [Burkholderia cenocepacia]
          Length = 309

 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/310 (70%), Positives = 270/310 (87%), Gaps = 1/310 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  IAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI
Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  
Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  I
Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299

Query: 328 ESLLRQNAGL 337
           E+ +R++ G+
Sbjct: 300 ENRIRESLGV 309


>gi|170664174|gb|ACB28506.1| RecA [Burkholderia pyrrocinia]
 gi|170664178|gb|ACB28508.1| RecA [Burkholderia pyrrocinia]
          Length = 310

 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/311 (70%), Positives = 271/311 (87%), Gaps = 1/311 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+V
Sbjct: 60  VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGL 337
           IE+ +R++ G+
Sbjct: 300 IENRIRESLGV 310


>gi|254448272|ref|ZP_05061734.1| protein RecA [gamma proteobacterium HTCC5015]
 gi|198262139|gb|EDY86422.1| protein RecA [gamma proteobacterium HTCC5015]
          Length = 348

 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 222/344 (64%), Positives = 278/344 (80%), Gaps = 9/344 (2%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + KAL AAL QI+R +GKG++M++G    +   IE +S+GSL LD+ALGIGG PKGR+VE
Sbjct: 5   RKKALAAALGQIERQFGKGSVMRMGD--GVIRNIESISTGSLTLDVALGIGGLPKGRVVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ L  +A+ QK GGT AFVDAEHALD  YA+KLGVD+  LL+SQPDTGE
Sbjct: 63  IYGPESSGKTTMTLQVVAECQKAGGTAAFVDAEHALDPTYAKKLGVDVDELLVSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DMLVRS AVD++VIDSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I 
Sbjct: 123 QALEIADMLVRSSAVDVVVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIK 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           RS  +++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IK  D + GN+T+
Sbjct: 183 RSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKKGDEVLGNETK 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK A PFK+  F+I+YGEG+SF GEL+DLGV+  +VDK+GAW+S  G+R+GQG++
Sbjct: 243 VKVVKNKTAPPFKEARFEILYGEGVSFEGELLDLGVEHKLVDKAGAWYSCNGERIGQGKD 302

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           N++ +L+E+ E+A  + S LR       D LL  P     DD +
Sbjct: 303 NARNYLKEHPEMAAELNSKLR-------DILLDLPKDGEADDEE 339


>gi|170718447|ref|YP_001783664.1| recombinase A [Haemophilus somnus 2336]
 gi|189039596|sp|B0UWL1|RECA_HAES2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|168826576|gb|ACA31947.1| recA protein [Haemophilus somnus 2336]
          Length = 355

 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/322 (69%), Positives = 272/322 (84%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K+KALEAAL QI++ +GKGAIM+LG    +   IE +S+GSL LD+ALGIGG P GRIV
Sbjct: 6   EKAKALEAALGQIEKQFGKGAIMKLGETQKL--DIEAISTGSLSLDVALGIGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IAQ+QK G TCAF+DAEHALD IYA KLGVD+K LLISQPD G
Sbjct: 64  EIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAEHALDPIYAAKLGVDVKELLISQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVD++++DSVAALTP+AEIEG+MG++  G+QARLMSQALRKLT  I
Sbjct: 124 EQALEICDALVRSGAVDVVIVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLTGQI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S C++VFINQ+RMKIGV+FG+PETTTGGNALKFY+SVRLDIRRVGSIK+ D + GN+T
Sbjct: 184 KNSNCLVVFINQIRMKIGVVFGNPETTTGGNALKFYASVRLDIRRVGSIKNGDEVIGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+QV+F I+YGEGIS  GELI+LGVK  +V+KSGAWFS++G+++GQG+
Sbjct: 244 RVKVVKNKVAPPFRQVDFQILYGEGISRNGELIELGVKHKLVNKSGAWFSYEGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N+  +L E+ E A  +E  LR
Sbjct: 304 TNAMKWLAEHPEQAAILEQKLR 325


>gi|296803022|gb|ADH51587.1| DNA recombinase [Burkholderia contaminans]
          Length = 316

 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/312 (70%), Positives = 271/312 (86%), Gaps = 1/312 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+ VS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 3   FGKGSIMRMGD-GEATENIQFVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 61

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 62  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 121

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 122 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 181

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 182 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 241

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 242 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 301

Query: 327 IESLLRQNAGLV 338
           IE+ +R++ G+V
Sbjct: 302 IENRIRESLGVV 313


>gi|270157136|ref|ZP_06185793.1| recombinase A [Legionella longbeachae D-4968]
 gi|289164459|ref|YP_003454597.1| RecA protein [Legionella longbeachae NSW150]
 gi|269989161|gb|EEZ95415.1| recombinase A [Legionella longbeachae D-4968]
 gi|288857632|emb|CBJ11472.1| RecA protein [Legionella longbeachae NSW150]
          Length = 347

 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 218/322 (67%), Positives = 277/322 (86%), Gaps = 1/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AALSQI+R +GKG++M++G   S+   IE +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKQKALSAALSQIERQFGKGSVMRMGDS-SVARDIEAISTGSLGLDIALGIGGLPKGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA+KLGV++  LL+SQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAECQKIGGTAAFIDAEHALDPSYAQKLGVNVDELLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSGAVD+I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 123 EQALEITDMLVRSGAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  + I G++T
Sbjct: 183 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGEEILGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK  EFDI+Y EGIS   E+I+L V+ ++++KSGAW+S+KG+++GQG+
Sbjct: 243 RVKVVKNKVAPPFKVTEFDILYNEGISRESEIINLAVQLNLIEKSGAWYSYKGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           +N +++L+E+ ++A  +E  +R
Sbjct: 303 DNVRLYLKEHSQVAATLEQQIR 324


>gi|157326907|gb|ABV44566.1| RecA [Burkholderia cenocepacia]
          Length = 311

 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 218/311 (70%), Positives = 271/311 (87%), Gaps = 1/311 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI
Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299

Query: 324 AENIESLLRQN 334
           A  IE+ +R++
Sbjct: 300 AREIENRIRES 310


>gi|296837395|gb|ADH59556.1| DNA recombinase [Burkholderia stabilis]
 gi|296837397|gb|ADH59557.1| DNA recombinase [Burkholderia contaminans]
          Length = 322

 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/317 (69%), Positives = 275/317 (86%), Gaps = 1/317 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V+IYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVQIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDL V+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLRVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESLLRQNAGLVA 339
           IA  IE+ +R++ G+VA
Sbjct: 300 IAREIENRIRESLGVVA 316


>gi|113866572|ref|YP_725061.1| recombinase A [Ralstonia eutropha H16]
 gi|123134402|sp|Q0KE78|RECA_CUPNH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|113525348|emb|CAJ91693.1| Recobination protein RecA [Ralstonia eutropha H16]
          Length = 354

 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/329 (68%), Positives = 286/329 (86%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AALSQI++ +GKG+IM+LG  G + + I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 13  EKQKALAAALSQIEKQFGKGSIMRLGD-GEVEKDIQVVSTGSLGLDIALGVGGLPRGRVV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  +A+ QK GGTCAF+DAEHALD  YA KLGV++ +LLISQPDTG
Sbjct: 72  EIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVSYANKLGVNVGDLLISQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 132 EQALEITDALVRSGSIDLIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGDDVIGNET 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK++ PF++  FDI+YG+GIS  GE+IDLGV A IV+KSGAW+S+ G ++GQG+
Sbjct: 252 KVKVVKNKVSPPFREAFFDILYGQGISRQGEIIDLGVDAKIVEKSGAWYSYNGDKIGQGK 311

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ +LREN +IA+ IE+ +R   G+VA
Sbjct: 312 DNAREYLRENPDIADEIENKVRAALGVVA 340


>gi|296932699|gb|ADH93503.1| recombinase A [Pseudomonas sp. In5]
          Length = 350

 Score =  462 bits (1188), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 226/348 (64%), Positives = 277/348 (79%), Gaps = 3/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI+R +GKGA+M++G Q    + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKKALAAALGQIERQFGKGAVMRMGDQDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAQAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+ASPF+Q EF I+YG+GI   GE+IDLGV    V+KSGAW++++G ++GQG+
Sbjct: 242 RVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD-ADKD 357
            NS  FL +N EIA  +E  LR      A  +   P   T DD AD D
Sbjct: 302 ANSAKFLADNPEIAAKLEKQLRDKLLTPAPDVKASPVKETADDLADAD 349


>gi|308212808|gb|ADO21632.1| RecA [Burkholderia arboris]
 gi|308212810|gb|ADO21633.1| RecA [Burkholderia arboris]
 gi|308212812|gb|ADO21634.1| RecA [Burkholderia arboris]
          Length = 316

 Score =  462 bits (1188), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/311 (70%), Positives = 271/311 (87%), Gaps = 1/311 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+VD+
Sbjct: 60  AELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSVDM 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG
Sbjct: 120 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  F
Sbjct: 180 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 239

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           DI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE
Sbjct: 240 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 299

Query: 329 SLLRQNAGLVA 339
           + +R++ G+V+
Sbjct: 300 NRIRESLGVVS 310


>gi|157326899|gb|ABV44562.1| RecA [Burkholderia cenocepacia]
          Length = 317

 Score =  462 bits (1188), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/313 (69%), Positives = 272/313 (86%), Gaps = 1/313 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNARDFLRENPEIARE 299

Query: 327 IESLLRQNAGLVA 339
           IE+ +R++ G+ +
Sbjct: 300 IENRIRESLGVFS 312


>gi|237809470|ref|YP_002893910.1| recombinase A [Tolumonas auensis DSM 9187]
 gi|259563347|sp|C4LBQ0|RECA_TOLAT RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|237501731|gb|ACQ94324.1| recA protein [Tolumonas auensis DSM 9187]
          Length = 360

 Score =  462 bits (1188), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/323 (69%), Positives = 269/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   I+ + +GSL LDIALGIGG P GRIV
Sbjct: 4   NKEKALAAALGQIEKQFGKGSIMRLGDTQSL--DIDSIPTGSLSLDIALGIGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IAQ+QK G TCAF+DAEHALD IYA KLGV + +LL+SQPDTG
Sbjct: 62  EIFGPESSGKTTLTLEVIAQAQKAGKTCAFIDAEHALDPIYAGKLGVKVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGAVD+I+IDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT +I
Sbjct: 122 EQALEICDMLVRSGAVDVIIIDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD + I GN+T
Sbjct: 182 KNANCLCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEIVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ +F I+YGEGIS   ELIDLGVK  ++DKSGAW+++KG ++GQG+
Sbjct: 242 RVKVVKNKVAPPFKQADFQILYGEGISKESELIDLGVKCKLIDKSGAWYAYKGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN   AE IE  LR+
Sbjct: 302 ANAMKYLKENTAAAEEIELKLRE 324


>gi|296837369|gb|ADH59543.1| DNA recombinase [Burkholderia contaminans]
          Length = 309

 Score =  462 bits (1188), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/310 (70%), Positives = 270/310 (87%), Gaps = 1/310 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI
Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  
Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  I
Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299

Query: 328 ESLLRQNAGL 337
           E+ +R++ G+
Sbjct: 300 ENRIRESLGV 309


>gi|52842028|ref|YP_095827.1| recombinase A [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|54297714|ref|YP_124083.1| recombinase A [Legionella pneumophila str. Paris]
 gi|148359347|ref|YP_001250554.1| DNA recombination protein RecA [Legionella pneumophila str. Corby]
 gi|296107394|ref|YP_003619094.1| recombination protein RecA [Legionella pneumophila 2300/99 Alcoy]
 gi|59798138|sp|Q5X4B5|RECA_LEGPA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|59798152|sp|Q5ZUJ7|RECA_LEGPH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166220654|sp|A5ICV8|RECA_LEGPC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|13186174|emb|CAC33484.1| RecA protein [Legionella pneumophila]
 gi|52629139|gb|AAU27880.1| RecA bacterial DNA recombination protein [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|53751499|emb|CAH12917.1| RecA protein [Legionella pneumophila str. Paris]
 gi|148281120|gb|ABQ55208.1| RecA bacterial DNA recombination protein [Legionella pneumophila
           str. Corby]
 gi|165968102|gb|ABY75873.1| RecA protein [Legionella pneumophila 2300/99 Alcoy]
 gi|295649295|gb|ADG25142.1| recombination protein RecA [Legionella pneumophila 2300/99 Alcoy]
 gi|307610503|emb|CBX00085.1| RecA protein [Legionella pneumophila 130b]
          Length = 348

 Score =  462 bits (1188), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 218/322 (67%), Positives = 275/322 (85%), Gaps = 1/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AALSQI+R +GKG++M++G   ++   IE +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKQKALSAALSQIERQFGKGSVMRMGD-STVSRDIEAISTGSLGLDIALGIGGLPKGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA+KLGV +  LL+SQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAECQKMGGTAAFIDAEHALDPSYAQKLGVKVDELLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+++IDSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 123 EQALEITDMLVRSAAVDVVIIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  + I G++T
Sbjct: 183 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGEEILGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK  EFDI+Y EGIS   E+I+LGV+ ++++KSGAW+S+K +++GQG+
Sbjct: 243 RVKVVKNKVAPPFKMTEFDILYNEGISRESEIINLGVQLNLIEKSGAWYSYKQEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           EN +++L+EN ++A  +E  +R
Sbjct: 303 ENVRLYLKENPQVAAELEQQIR 324


>gi|254514870|ref|ZP_05126931.1| protein RecA [gamma proteobacterium NOR5-3]
 gi|219677113|gb|EED33478.1| protein RecA [gamma proteobacterium NOR5-3]
          Length = 366

 Score =  462 bits (1188), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/326 (67%), Positives = 271/326 (83%), Gaps = 3/326 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN  +K KALEAALSQI R +GKG +M++G    I   I  +S+GSLGLD+ALGIGG PK
Sbjct: 1   MN-ANKEKALEAALSQIDRQFGKGTVMRMGDNDRI--AIPAISTGSLGLDVALGIGGLPK 57

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI EI+GPESSGKTTL L  IA++QK GGT AF+DAEHALD IYA KLGV + +L++SQ
Sbjct: 58  GRICEIFGPESSGKTTLTLQVIAEAQKAGGTAAFIDAEHALDPIYAEKLGVKIDDLIVSQ 117

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALE+T+MLVRSGAVD++VIDSVAALTPRAEIEGDMG+S  G+QARL+SQA+RKL
Sbjct: 118 PDTGEQALEVTEMLVRSGAVDVLVIDSVAALTPRAEIEGDMGDSHVGLQARLLSQAMRKL 177

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T++I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++K+ D + 
Sbjct: 178 TATIKQTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKEGDEVV 237

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EF IMYG GI    E+ID GVK  +VDKSGAW+++KG ++
Sbjct: 238 GNETRVKVVKNKVAPPFKQAEFQIMYGRGIYRTAEVIDWGVKLGLVDKSGAWYAYKGDKI 297

Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332
           GQG+ N+  FL +N  +   IE L+R
Sbjct: 298 GQGKANAAKFLEDNPALGSEIEGLIR 323


>gi|307825705|ref|ZP_07655922.1| recA protein [Methylobacter tundripaludum SV96]
 gi|307733282|gb|EFO04142.1| recA protein [Methylobacter tundripaludum SV96]
          Length = 345

 Score =  462 bits (1188), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/340 (65%), Positives = 282/340 (82%), Gaps = 2/340 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG++M++G   +  + I+VVS+GSLGLDIALG GG P+GR++
Sbjct: 4   NKKKALGAALMQIEKQFGKGSVMRMGDVAASRD-IDVVSTGSLGLDIALGCGGLPRGRVI 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AFVDAEHALD  YA K+GV++ +LL+SQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAEMQKLGGTAAFVDAEHALDPSYAEKIGVNVDDLLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSGAVD++VIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDMLVRSGAVDVVVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTGNI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  + + GN+T
Sbjct: 183 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGEEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF+I+YGEGISF GEL+DLGV    + K+G+W+S+  +++GQG+
Sbjct: 243 RVKVVKNKVAPPFRQAEFEILYGEGISFLGELVDLGVSYGFIQKAGSWYSYGDEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNA-GLVADSLLQEPAIN 349
           +N K FLRE+ E A+ IE+ +R  A G     L++ P ++
Sbjct: 303 DNVKAFLREHPEKAKEIEAKIRAEAFGKKVAPLIEAPVVD 342


>gi|285017962|ref|YP_003375673.1| protein reca (recombinase a) [Xanthomonas albilineans GPE PC73]
 gi|283473180|emb|CBA15686.1| probable protein reca (recombinase a) [Xanthomonas albilineans]
          Length = 345

 Score =  462 bits (1188), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/325 (67%), Positives = 277/325 (85%), Gaps = 4/325 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AALSQI++ +GKG++M++G +  + E +EV+ +GSL LDIALGIGG PKGR+V
Sbjct: 4   NKKRALAAALSQIEKQFGKGSVMRMGDR--VIEAVEVIPTGSLMLDIALGIGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK GGT AF+DAEHALD +YA KLGV++  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAQCQKNGGTAAFIDAEHALDPVYAAKLGVNVDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VDI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSGSVDIVVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  ++VFINQ+RMKIGVM    SPETTTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 182 KRSNTLVVFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELID+GV+A +V+K+GAW+S+  +R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVEKAGAWYSYGSERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333
           G++N++ +LR+N ++A  +ES LR+
Sbjct: 302 GKDNARGYLRDNPQVAAKLESELRE 326


>gi|54294688|ref|YP_127103.1| RecA protein [Legionella pneumophila str. Lens]
 gi|59798134|sp|Q5WVQ0|RECA_LEGPL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|53754520|emb|CAH16004.1| RecA protein [Legionella pneumophila str. Lens]
          Length = 348

 Score =  462 bits (1188), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 218/322 (67%), Positives = 275/322 (85%), Gaps = 1/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AALSQI+R +GKG++M++G   ++   IE +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKQKALSAALSQIERQFGKGSVMRMGD-STVSRDIEAISTGSLGLDIALGIGGLPKGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA+KLGV +  LL+SQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAECQKMGGTAAFIDAEHALDPSYAQKLGVKVDELLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+++IDSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 123 EQALEITDMLVRSAAVDVVIIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  + I G++T
Sbjct: 183 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGEEILGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK  EFDI+Y EGIS   E+I+LGV+ ++++KSGAW+S+K +++GQG+
Sbjct: 243 RVKVVKNKVAPPFKMTEFDILYNEGISRESEIINLGVQLNLIEKSGAWYSYKQEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           EN +++L+EN ++A  +E  +R
Sbjct: 303 ENVRLYLKENPQVAAELEQQIR 324


>gi|113461446|ref|YP_719515.1| recombinase A [Haemophilus somnus 129PT]
 gi|122945386|sp|Q0I4T0|RECA_HAES1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|112823489|gb|ABI25578.1| RecA protein [Haemophilus somnus 129PT]
          Length = 355

 Score =  462 bits (1188), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/322 (69%), Positives = 272/322 (84%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K+KALEAAL QI++ +GKGAIM+LG    +   IE +S+GSL LD+ALGIGG P GRIV
Sbjct: 6   EKAKALEAALGQIEKQFGKGAIMKLGETQKL--DIEAISTGSLSLDVALGIGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IAQ+QK G TCAF+DAEHALD IYA KLGVD+K LLISQPD G
Sbjct: 64  EIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAEHALDPIYAAKLGVDVKELLISQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVD++++DSVAALTP+AEIEG+MG++  G+QARLMSQALRKLT  I
Sbjct: 124 EQALEICDALVRSGAVDVVIVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLTGQI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S C++VFINQ+RMKIGV+FG+PETTTGGNALKFY+SVRLDIRRVGSIK+ D + GN+T
Sbjct: 184 KNSNCLVVFINQIRMKIGVIFGNPETTTGGNALKFYASVRLDIRRVGSIKNGDEVIGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+QV+F I+YGEGIS  GELI+LGVK  +V+KSGAWFS++G+++GQG+
Sbjct: 244 RVKVVKNKVAPPFRQVDFQILYGEGISRNGELIELGVKHKLVNKSGAWFSYEGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N+  +L E+ E A  +E  LR
Sbjct: 304 TNAMKWLAEHPEQAAILEQKLR 325


>gi|157326939|gb|ABV44582.1| RecA [Burkholderia multivorans]
          Length = 311

 Score =  462 bits (1188), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 218/311 (70%), Positives = 272/311 (87%), Gaps = 1/311 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI
Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299

Query: 324 AENIESLLRQN 334
           A  IE+ +R++
Sbjct: 300 AREIENRIRES 310


>gi|56477358|ref|YP_158947.1| recombinase A [Aromatoleum aromaticum EbN1]
 gi|76363319|sp|Q5P3R8|RECA_AROAE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|56313401|emb|CAI08046.1| RecA [Aromatoleum aromaticum EbN1]
          Length = 346

 Score =  461 bits (1187), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 221/327 (67%), Positives = 276/327 (84%), Gaps = 1/327 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           SQI++ +GKG+IM++G  G+I   I+ VS+GSLGLDIALG+GG P+GR+VEIYGPESSGK
Sbjct: 14  SQIEKQFGKGSIMRMGD-GTIERDIQTVSTGSLGLDIALGLGGLPRGRVVEIYGPESSGK 72

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++++LLISQPDTGEQALEI DML
Sbjct: 73  TTLTLQVIAEMQKLGGTAAFIDAEHALDVGYAEKLGVNIQDLLISQPDTGEQALEIADML 132

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSG V+I+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT++I R+  +++FI
Sbjct: 133 VRSGGVEIVVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTANIKRTNTLVIFI 192

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK  D + G++TR KVVKNK+A
Sbjct: 193 NQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAIKKGDEVVGSETRCKVVKNKVA 252

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
            PFK+  FDI+YGEGIS  GE+IDLGV+  IVDKSGAW+++KG+++GQG++NS+ FLR N
Sbjct: 253 PPFKEAHFDILYGEGISREGEIIDLGVQHKIVDKSGAWYAYKGEKIGQGKDNSREFLRAN 312

Query: 321 IEIAENIESLLRQNAGLVADSLLQEPA 347
             +A  IE+ +R   GL A ++   PA
Sbjct: 313 PALAREIENKVRAQVGLNAMAVEAAPA 339


>gi|171057188|ref|YP_001789537.1| recombinase A [Leptothrix cholodnii SP-6]
 gi|170774633|gb|ACB32772.1| recA protein [Leptothrix cholodnii SP-6]
          Length = 353

 Score =  461 bits (1187), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 222/327 (67%), Positives = 287/327 (87%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K+KAL+ AL+QI++ +GKG+IM+LG +G + E I+VVS+GSLGLD+ALG+GG P+GR+V
Sbjct: 12  EKAKALQVALAQIEKQFGKGSIMRLG-EGEVIEDIQVVSTGSLGLDVALGVGGLPRGRVV 70

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK  G CAF+DAEHALD  YA+KLGV+L++LLISQPDTG
Sbjct: 71  EIYGPESSGKTTLTLQVIAQMQKLSGVCAFIDAEHALDIQYAQKLGVNLQDLLISQPDTG 130

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG+VD+IV+DSVAALTP+AE+EG+MG+SLPG+QARLMSQALRKLTS+I
Sbjct: 131 EQALEIVDALVRSGSVDLIVVDSVAALTPKAELEGEMGDSLPGLQARLMSQALRKLTSNI 190

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  + + G++T
Sbjct: 191 KKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGEEVIGSET 250

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK++ PFK  EFDI+YGEGIS  GE+ID+GV A +VDKSGAW+++ G+++GQG+
Sbjct: 251 KVKVVKNKVSPPFKTAEFDILYGEGISREGEIIDMGVVAKVVDKSGAWYAYNGEKIGQGK 310

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           +N + FLREN  +A  IE+ +R++ G+
Sbjct: 311 DNCREFLRENPALAHEIENKIRESLGI 337


>gi|89902707|ref|YP_525178.1| recombination protein RecA [Rhodoferax ferrireducens T118]
 gi|89347444|gb|ABD71647.1| recA protein [Rhodoferax ferrireducens T118]
          Length = 384

 Score =  461 bits (1187), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 224/327 (68%), Positives = 286/327 (87%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K+KAL+ AL+QI++ +GKG IM+LG +G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 38  EKAKALQVALAQIEKQFGKGTIMRLG-EGEVIEDIQVVSTGSLGLDIALGVGGLPRGRVV 96

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QKTGG CAF+DAEHALD  YA+ LGV+L++LLISQPDTG
Sbjct: 97  EIYGPESSGKTTLTLQVIAEMQKTGGQCAFIDAEHALDIQYAQNLGVNLQDLLISQPDTG 156

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVD+IV+DSVAALTP+AE+EG+MG+SLPG+QARLMSQALRKLT+ I
Sbjct: 157 EQALEIVDSLVRSGAVDLIVVDSVAALTPKAELEGEMGDSLPGLQARLMSQALRKLTAHI 216

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK  D   GN+T
Sbjct: 217 KKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGDVAIGNET 276

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PFK  EFDI++GEGIS  GE+ID+GV A+I+DKSGAW+++ G+++GQGR
Sbjct: 277 KVKVVKNKVAPPFKTAEFDILFGEGISRQGEIIDMGVNANILDKSGAWYAYNGEKIGQGR 336

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           +N++ FLREN  +++ IE+ +R + G+
Sbjct: 337 DNARDFLRENPALSQEIENKVRASLGI 363


>gi|296837401|gb|ADH59559.1| DNA recombinase [Burkholderia contaminans]
          Length = 310

 Score =  461 bits (1187), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/310 (70%), Positives = 270/310 (87%), Gaps = 1/310 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+
Sbjct: 60  AELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG
Sbjct: 120 IVIDSVAALAPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  F
Sbjct: 180 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 239

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           DI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE
Sbjct: 240 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 299

Query: 329 SLLRQNAGLV 338
           + +R++ G+V
Sbjct: 300 NRIRESLGVV 309


>gi|308212816|gb|ADO21636.1| RecA [Burkholderia arboris]
          Length = 317

 Score =  461 bits (1187), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/313 (69%), Positives = 272/313 (86%), Gaps = 1/313 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           + KG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FDKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGLVA 339
           IE+ +R++ G+V+
Sbjct: 300 IENRIRESLGVVS 312


>gi|161788606|emb|CAP18003.2| DNA recombinase [Burkholderia lata]
          Length = 321

 Score =  461 bits (1187), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/310 (70%), Positives = 270/310 (87%), Gaps = 1/310 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQNAGLVA 339
            +R++ G+VA
Sbjct: 300 RIRESLGVVA 309


>gi|325983480|ref|YP_004295882.1| recA protein [Nitrosomonas sp. AL212]
 gi|325532999|gb|ADZ27720.1| recA protein [Nitrosomonas sp. AL212]
          Length = 344

 Score =  461 bits (1187), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 221/327 (67%), Positives = 278/327 (85%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++SKAL+ AL+QI++ +GKG+IM+LG+    ++ I+VVS+GSLGLDIALG+GG P+GRIV
Sbjct: 4   NRSKALDVALAQIEKQFGKGSIMRLGANDVAYD-IQVVSTGSLGLDIALGVGGLPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA+K+GV++K LLISQPD G
Sbjct: 63  EIYGPESSGKTTLTLQVIAEMQKVGGTAAFIDAEHALDPQYAQKIGVNVKELLISQPDNG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VDIIVIDSVAALTPRAEIEGDMG+   G+QARLMSQALRKLT++I
Sbjct: 123 EQALEIADMLVRSGSVDIIVIDSVAALTPRAEIEGDMGDPQMGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK  D   GN+T
Sbjct: 183 KRSNTMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKKGDETIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ +FDI+YGEGIS   E+I+LGV   ++DK+GAW+++KG+++GQG+
Sbjct: 243 RVKVVKNKVAPPFKQADFDILYGEGISRESEIIELGVLHKLIDKAGAWYAYKGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           +N + +L+E+ +IA  IE  +R   G+
Sbjct: 303 DNVRDYLKEHKDIALEIEQKIRSIVGI 329


>gi|296837411|gb|ADH59564.1| DNA recombinase [Burkholderia lata]
          Length = 309

 Score =  461 bits (1187), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 218/308 (70%), Positives = 269/308 (87%), Gaps = 1/308 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 2   FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 60

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 61  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 120

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 121 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 180

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 181 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 240

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 241 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 300

Query: 327 IESLLRQN 334
           IE+ +R++
Sbjct: 301 IENRIRES 308


>gi|170664144|gb|ACB28491.1| RecA [Burkholderia cepacia]
 gi|170664146|gb|ACB28492.1| RecA [Burkholderia cepacia]
 gi|170664148|gb|ACB28493.1| RecA [Burkholderia cepacia]
 gi|170664152|gb|ACB28495.1| RecA [Burkholderia cepacia]
 gi|170664156|gb|ACB28497.1| RecA [Burkholderia cepacia]
 gi|170664158|gb|ACB28498.1| RecA [Burkholderia cepacia]
          Length = 310

 Score =  461 bits (1187), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 218/311 (70%), Positives = 271/311 (87%), Gaps = 1/311 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGL 337
           IE+ +R++ G+
Sbjct: 300 IENRIRESLGV 310


>gi|126046695|gb|ABN73105.1| RecA [Burkholderia sp. 'isolate BCCU2']
          Length = 308

 Score =  461 bits (1187), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/309 (70%), Positives = 269/309 (87%), Gaps = 1/309 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI
Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  
Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  I
Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299

Query: 328 ESLLRQNAG 336
           E+ +R++ G
Sbjct: 300 ENRIRESLG 308


>gi|284097292|ref|ZP_06385430.1| recombinase A [Candidatus Poribacteria sp. WGA-A3]
 gi|283831198|gb|EFC35170.1| recombinase A [Candidatus Poribacteria sp. WGA-A3]
          Length = 349

 Score =  461 bits (1187), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 217/326 (66%), Positives = 277/326 (84%), Gaps = 1/326 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KALE A++QI++ +GKG+IM+LG+ G + + ++  S+GSL LD+ALG+GG P+GR+VEI+
Sbjct: 2   KALELAVTQIEKQFGKGSIMKLGT-GDVSDDVQATSTGSLALDLALGVGGLPRGRVVEIF 60

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTL LH IA++QKTGG+ AF+DAEHALD  YA+KLGV + +LL++QPDTGEQA
Sbjct: 61  GPESSGKTTLCLHAIAEAQKTGGSAAFIDAEHALDVSYAKKLGVKIDDLLVAQPDTGEQA 120

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI + LVRSGA+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT +IS+S
Sbjct: 121 LEIAETLVRSGAIDLVVVDSVAALVPRAEIEGEMGDSHMGLQARLMSQALRKLTGAISKS 180

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
              +VFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+ SIKD   + G++ RVK
Sbjct: 181 LTTVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIESIKDGQEVIGSRVRVK 240

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VVKNK A PF+Q EFDIM+ EG+S  GELIDLGV+  I+DK+GAW+S++ +RLGQGRE  
Sbjct: 241 VVKNKTAPPFRQAEFDIMFAEGVSKVGELIDLGVEKKIIDKAGAWYSYREERLGQGREAV 300

Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339
           K FL+EN E A+ IE+ +R+ AGL+A
Sbjct: 301 KAFLKENPETAKEIETKIREQAGLLA 326


>gi|296802980|gb|ADH51566.1| DNA recombinase [Burkholderia contaminans]
          Length = 309

 Score =  461 bits (1186), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 218/308 (70%), Positives = 269/308 (87%), Gaps = 1/308 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 2   FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 60

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 61  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 120

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 121 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 180

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 181 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 240

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 241 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 300

Query: 327 IESLLRQN 334
           IE+ +R++
Sbjct: 301 IENRIRES 308


>gi|94309411|ref|YP_582621.1| recombinase A [Cupriavidus metallidurans CH34]
 gi|123081425|sp|Q1LR74|RECA_RALME RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|93353263|gb|ABF07352.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Cupriavidus metallidurans CH34]
          Length = 353

 Score =  461 bits (1186), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/327 (69%), Positives = 285/327 (87%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AALSQI++ +GKG+IM+LG  G I + I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 13  EKQKALAAALSQIEKQFGKGSIMRLGD-GEIEQDIQVVSTGSLGLDIALGVGGLPRGRVV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  +A+ QK GGTCAF+DAEHALD  YA KLGVD+ NLLISQPDTG
Sbjct: 72  EIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVQYAGKLGVDVGNLLISQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 132 EQALEITDALVRSGSIDLIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGDEVVGNET 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK++ PF++  FDI+YG+GIS  GE+IDLGV A IV+K+GAW+S+ G+++GQG+
Sbjct: 252 KVKVVKNKVSPPFREAFFDILYGQGISRQGEIIDLGVDAKIVEKAGAWYSYNGEKIGQGK 311

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           +N++ +LREN +IA+ IE+ +R   G+
Sbjct: 312 DNAREYLRENPDIADEIENKVRLALGV 338


>gi|296803024|gb|ADH51588.1| DNA recombinase [Burkholderia contaminans]
 gi|296803072|gb|ADH51612.1| DNA recombinase [Burkholderia contaminans]
          Length = 308

 Score =  461 bits (1186), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/309 (70%), Positives = 269/309 (87%), Gaps = 1/309 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI
Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  
Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  I
Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299

Query: 328 ESLLRQNAG 336
           E+ +R++ G
Sbjct: 300 ENRIRESLG 308


>gi|296837427|gb|ADH59572.1| DNA recombinase [Burkholderia contaminans]
          Length = 310

 Score =  461 bits (1186), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 218/311 (70%), Positives = 270/311 (86%), Gaps = 1/311 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GK +IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKASIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGL 337
           IE+ +R++ G+
Sbjct: 300 IENRIRESLGV 310


>gi|160872478|ref|ZP_02062610.1| protein RecA [Rickettsiella grylli]
 gi|159121277|gb|EDP46615.1| protein RecA [Rickettsiella grylli]
          Length = 351

 Score =  461 bits (1186), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 218/323 (67%), Positives = 272/323 (84%), Gaps = 2/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + KAL+ ALSQI++ +G+GA+M+LG    +   ++V+S+GSLGLDIALGIGG P+GRIVE
Sbjct: 8   REKALKMALSQIKKQHGEGAVMRLGDSSRV--SVDVISTGSLGLDIALGIGGLPRGRIVE 65

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL L TIA+ QK GG  AFVDAEHALD+ YA KLGV   +LL+SQPDTGE
Sbjct: 66  IYGPESSGKTTLTLQTIAECQKMGGVAAFVDAEHALDANYAEKLGVKKDDLLVSQPDTGE 125

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DMLVRS A+DIIV+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRKL  +I 
Sbjct: 126 QALEIVDMLVRSNAIDIIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKLAGNIK 185

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           RS  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK  D + GN+TR
Sbjct: 186 RSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKKSDEVIGNETR 245

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PFKQ EF+I+Y +GI   GE++DLGV   ++DK+GAW+S++G+R+GQG++
Sbjct: 246 VKVVKNKVAPPFKQAEFEILYNQGICHRGEIVDLGVAQGLIDKAGAWYSYQGERIGQGKD 305

Query: 312 NSKIFLRENIEIAENIESLLRQN 334
           N K FLR+ IE+ + IE+ +R+N
Sbjct: 306 NVKQFLRDRIELCQQIETEIRKN 328


>gi|157326893|gb|ABV44559.1| RecA [Burkholderia cenocepacia]
          Length = 308

 Score =  461 bits (1186), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 218/308 (70%), Positives = 269/308 (87%), Gaps = 1/308 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 2   FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 60

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 61  VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 120

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 121 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 180

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 181 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 240

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 241 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 300

Query: 327 IESLLRQN 334
           IE+ +R++
Sbjct: 301 IENRIRES 308


>gi|319786626|ref|YP_004146101.1| recA protein [Pseudoxanthomonas suwonensis 11-1]
 gi|317465138|gb|ADV26870.1| recA protein [Pseudoxanthomonas suwonensis 11-1]
          Length = 341

 Score =  461 bits (1186), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 226/349 (64%), Positives = 284/349 (81%), Gaps = 13/349 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AALSQI++ +GKG++M++G +  + E +EV+ +GSL LDIALGIGG PKGR+V
Sbjct: 4   NKKRALAAALSQIEKQFGKGSVMRMGDR--VVEPVEVIPTGSLMLDIALGIGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD IYA KLGV + +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAECQKQGGTAAFIDAEHALDPIYAAKLGVKVDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VDI+V+DSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSGSVDILVVDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  +++FINQ+R KIGVM    SPETTTGGNALKFY+SVRLDIRR+GSIK  D I GN
Sbjct: 182 KRSNTLVIFINQLRHKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGSIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQ+  +I+YGEGIS  GELID+GV A IV+KSGAW+S+  +R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQIVTEILYGEGISREGELIDMGVDAKIVEKSGAWYSYGSERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           G++NS+ +LREN E+A  +E  LR+           +PA  ++D+A +D
Sbjct: 302 GKDNSRQYLRENPEVAARLEGELREKF---------QPAEVSRDEAAED 341


>gi|330431987|gb|AEC17046.1| recombinase A [Gallibacterium anatis UMN179]
          Length = 355

 Score =  461 bits (1186), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 229/353 (64%), Positives = 282/353 (79%), Gaps = 12/353 (3%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  DK +AL AAL QI++ +GKG+IM+LG   ++   +E VS+GSL LD+ALGIGG P G
Sbjct: 4   NNEDKERALAAALGQIEKQFGKGSIMRLGDTQTL--DVEAVSTGSLALDVALGIGGLPMG 61

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEI+GPESSGKTTL L  IAQ+QK G TCAF+DAEHALD IYA KLGVD+++LL+SQP
Sbjct: 62  RIVEIFGPESSGKTTLTLSVIAQAQKEGKTCAFIDAEHALDPIYASKLGVDVQSLLVSQP 121

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI D LVRSGAVD+I+IDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT
Sbjct: 122 DNGEQALEICDALVRSGAVDVIIIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLT 181

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
             I  + C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSI D D + G
Sbjct: 182 GHIKTANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSITDGDEVIG 241

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+TRVKVVKNK+A+PF+Q EF I+YGEGIS  GELI+LGVK  +++KSGAW+S+  +++G
Sbjct: 242 NETRVKVVKNKVAAPFRQAEFQILYGEGISKNGELIELGVKHKLLNKSGAWYSYNDEKIG 301

Query: 308 QGRENSKIFLRENIEIAENIESLLRQ------NAGLVADSLLQEPAINTKDDA 354
           QGR N+  +L E+ E+A  +E  LR+         LVAD   ++P    +DDA
Sbjct: 302 QGRTNAMKWLAEHPEVAAELERKLREELLSNPEQLLVADDTEKQP----EDDA 350


>gi|42522117|ref|NP_967497.1| recombinase A [Bdellovibrio bacteriovorus HD100]
 gi|60392991|sp|P62212|RECA_BDEBA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|39574648|emb|CAE78490.1| RecA protein [Bdellovibrio bacteriovorus HD100]
          Length = 377

 Score =  461 bits (1185), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/312 (70%), Positives = 271/312 (86%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALE A+S I++ +GKG+IM+LG+  S+ + +E +S+G+L LDIALGIGG PKGRI 
Sbjct: 13  EKIKALELAVSTIEKQFGKGSIMRLGANESLVKDVEAISTGALSLDIALGIGGLPKGRIC 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK GG  AFVDAEHALD  YARKLGV+ ++LLISQPDTG
Sbjct: 73  EIYGPESSGKTTLCLSVIAQAQKKGGVVAFVDAEHALDINYARKLGVNTEDLLISQPDTG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ LVRSGA+D++V+DSVAAL PRAEIEGDMG+S  G+QARLMSQALRKLT++I
Sbjct: 133 EQALEITETLVRSGAIDVLVVDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKLTAAI 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +RS  +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLD+RRVG+IK+ + +TGN+T
Sbjct: 193 NRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDVRRVGAIKNGEDVTGNRT 252

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
            VKVVKNKMA PF +VEFD+MYGEGIS  G+L+DL V A++V+KSGAWFS  G+R+GQGR
Sbjct: 253 AVKVVKNKMAPPFTKVEFDLMYGEGISEEGDLLDLAVTANMVEKSGAWFSINGERMGQGR 312

Query: 311 ENSKIFLRENIE 322
           + +K FL+E+ E
Sbjct: 313 DAAKNFLKEHPE 324


>gi|464597|sp|Q05358|RECA_LEGPN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|48780|emb|CAA39097.1| recA [Legionella pneumophila]
 gi|227652|prf||1708209A recA gene
          Length = 348

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/322 (67%), Positives = 275/322 (85%), Gaps = 1/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AA+SQI+R +GKG++M++G   ++   IE +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKQKALSAAVSQIERQFGKGSVMRMGD-STVSRDIEAISTGSLGLDIALGIGGLPKGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA+KLGV +  LL+SQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAECQKMGGTAAFIDAEHALDPSYAQKLGVKVDELLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+++IDSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 123 EQALEITDMLVRSAAVDVVIIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  + I G++T
Sbjct: 183 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGEEILGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK  EFDI+Y EGIS   E+I+LGV+ ++++KSGAW+S+K +++GQG+
Sbjct: 243 RVKVVKNKVAPPFKMTEFDILYNEGISRESEIINLGVQLNLIEKSGAWYSYKQEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           EN +++L+EN ++A  +E  +R
Sbjct: 303 ENVRLYLKENPQVAAELEQQIR 324


>gi|296837437|gb|ADH59577.1| DNA recombinase [Burkholderia contaminans]
          Length = 308

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/308 (70%), Positives = 269/308 (87%), Gaps = 1/308 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQN 334
           IE+ +R++
Sbjct: 300 IENRIRES 307


>gi|153003330|ref|YP_001377655.1| recA protein [Anaeromyxobacter sp. Fw109-5]
 gi|152026903|gb|ABS24671.1| recA protein [Anaeromyxobacter sp. Fw109-5]
          Length = 358

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 216/327 (66%), Positives = 278/327 (85%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KA+E A+S I++ +GKG+IM+LG++ ++ + ++ VS+GS+ LDIALG+GGFP+GRI+
Sbjct: 6   EKEKAIELAVSSIEKAFGKGSIMRLGNEEALVKDVQAVSTGSVSLDIALGVGGFPRGRII 65

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH +A++QK GG  AFVDAEHALD  YARKLGV   +LLISQPDTG
Sbjct: 66  EIYGPESSGKTTLALHAVAEAQKKGGIAAFVDAEHALDVGYARKLGVRTDDLLISQPDTG 125

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+D++V+DSVAAL P+AE+EG+MG++  G+QARLMSQALRKLT +I
Sbjct: 126 EQALEIAETLVRSGAIDVLVVDSVAALVPKAELEGEMGDAHMGVQARLMSQALRKLTGTI 185

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S  I++FINQ+RMKIGVMFG+PETTTGGNALKFY++ RLDIRR+G+IKD D + GN+T
Sbjct: 186 SKSSTIVIFINQIRMKIGVMFGNPETTTGGNALKFYATQRLDIRRIGAIKDGDQVIGNRT 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK+VEFDIMYG GIS  G+L+DLG   +IV+KSG WFSF G+R+GQGR
Sbjct: 246 RVKVVKNKVAPPFKEVEFDIMYGHGISREGDLLDLGSNENIVEKSGTWFSFGGERIGQGR 305

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           E +K FLRE+ E+ + +E  L +  G+
Sbjct: 306 EQAKAFLREHPEVLQQVEGKLFEKFGI 332


>gi|254497510|ref|ZP_05110302.1| RecA protein [Legionella drancourtii LLAP12]
 gi|254353227|gb|EET11970.1| RecA protein [Legionella drancourtii LLAP12]
          Length = 348

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/322 (68%), Positives = 275/322 (85%), Gaps = 1/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AALSQI+R +GKG++M +G   S+   IE +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKQKALSAALSQIERQFGKGSVMLMGD-SSVSRDIEAISTGSLGLDIALGIGGLPKGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA+KLGV++  LL+SQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAECQKMGGTAAFIDAEHALDPSYAQKLGVNVDELLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I+IDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT++I
Sbjct: 123 EQALEITDMLVRSAAVDVIIIDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  + I G++T
Sbjct: 183 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGEEILGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK  EFDI+Y EGIS   E+I+L V+ ++++KSGAW+S+K +++GQG+
Sbjct: 243 RVKVVKNKVAPPFKMTEFDILYNEGISRESEIINLAVQLNLIEKSGAWYSYKQEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           +N +++L++N +IA ++E  +R
Sbjct: 303 DNVRLYLKDNPQIAASLEQQIR 324


>gi|296802992|gb|ADH51572.1| DNA recombinase [Burkholderia contaminans]
 gi|296803110|gb|ADH51631.1| DNA recombinase [Burkholderia contaminans]
          Length = 308

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/308 (70%), Positives = 269/308 (87%), Gaps = 1/308 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQN 334
           IE+ +R++
Sbjct: 300 IENRIRES 307


>gi|42520858|ref|NP_966773.1| recombinase A [Wolbachia endosymbiont of Drosophila melanogaster]
 gi|60393632|sp|P62222|RECA_WOLPM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|42410598|gb|AAS14707.1| recA protein [Wolbachia endosymbiont of Drosophila melanogaster]
          Length = 355

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 215/322 (66%), Positives = 274/322 (85%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+ A+SQI++ +GKGAIM+L  + +  E I+ +S+GS+ LD ALG+GG PKGRI+
Sbjct: 11  DKQKALDNAISQIEKAFGKGAIMKL--KQNPVEKIDTISTGSIALDSALGVGGLPKGRII 68

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTLALH IA++QK GG+CAF+DAEHALD +YARKLGV   +L+ISQPDTG
Sbjct: 69  EIFGPESSGKTTLALHVIAEAQKKGGSCAFIDAEHALDVLYARKLGVSTDDLVISQPDTG 128

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL I + LV SGAVD+IVIDSVAALTPRAEIEGDMG+   G+QARL+S  LRKLTS++
Sbjct: 129 EQALHIVEYLVCSGAVDVIVIDSVAALTPRAEIEGDMGDQHMGLQARLLSHGLRKLTSAV 188

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++ CIL+FINQ+RMKIGV++G+PETTTGGNALKFY+SVRLDIR+VG IKDK++ITGN+T
Sbjct: 189 SKANCILIFINQIRMKIGVVYGNPETTTGGNALKFYTSVRLDIRKVGVIKDKENITGNET 248

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++ +FDIMY EGIS  GE+ID+G K  +++K+GA++S+   RLGQGR
Sbjct: 249 RVKVVKNKVAPPFREAKFDIMYNEGISKLGEIIDMGAKLGVLEKAGAYYSYNNTRLGQGR 308

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           EN K +L+ N E+A  IE+ +R
Sbjct: 309 ENVKTYLKTNKEVANEIETKIR 330


>gi|262372265|ref|ZP_06065544.1| recA protein [Acinetobacter junii SH205]
 gi|262312290|gb|EEY93375.1| recA protein [Acinetobacter junii SH205]
          Length = 348

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 215/323 (66%), Positives = 269/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL+AALSQI++ +GK  +M+LG   +  + +E VS+GSL LDIALGIGG PKGRI+
Sbjct: 4   NKSKALQAALSQIEKQFGKNTVMRLGD--NTVQAVEAVSTGSLTLDIALGIGGLPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ L  IAQ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD G
Sbjct: 62  EIYGPESSGKTTMTLQAIAQCQKNGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T + 
Sbjct: 122 EQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNA 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G +K+ D I G++T
Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNKMA PF++  F IMYG+G +  GEL+DL V+  IV K+GAW+S++G ++GQG+
Sbjct: 242 KVKVVKNKMAPPFREAVFQIMYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N   +  EN +IA  IE ++R+
Sbjct: 302 NNVIRYFEENSKIAAEIEKVVRE 324


>gi|70904907|gb|AAZ14031.1| RecA [Burkholderia vietnamiensis]
          Length = 307

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/307 (71%), Positives = 269/307 (87%), Gaps = 1/307 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIES 329
           IA  IE+
Sbjct: 300 IAREIEN 306


>gi|11387030|sp|Q9JRP9|RECA_AGGAC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|7264738|gb|AAF44334.1|AF238282_1 recombinase A [Aggregatibacter actinomycetemcomitans]
          Length = 352

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/336 (66%), Positives = 276/336 (82%), Gaps = 9/336 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AAL QI++ +GKGAIM+LG    +   IE +S+GS GLD+ALGIGG P GRIV
Sbjct: 6   EKQKALDAALGQIEKQFGKGAIMKLGDSQKL--DIEAISTGSFGLDLALGIGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA++QKTG TCAF+DAEHALD IYA KLGVD+K  L+SQPD G
Sbjct: 64  EIFGPESSGKTTLTLSVIAEAQKTGKTCAFIDAEHALDPIYASKLGVDVKEPLVSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLTS I
Sbjct: 124 EQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTSQI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRRVGSIK+ D + GN+T
Sbjct: 184 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRVGSIKEGDEVIGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+QV+F I+YGEGIS   ELI+LGVK  ++ K+GAW++++ +++GQG+
Sbjct: 244 RVKVVKNKVAPPFRQVDFQILYGEGISKESELIELGVKHKLISKAGAWYAYQNEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
            N+  +L++N E A+ IES LR       D LL  P
Sbjct: 304 TNAMKWLKDNPEQAKFIESTLR-------DELLAHP 332


>gi|296803124|gb|ADH51638.1| DNA recombinase [Burkholderia cepacia]
          Length = 310

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/311 (70%), Positives = 270/311 (86%), Gaps = 1/311 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G     I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEATXNIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGL 337
           IE+ +R++ G+
Sbjct: 300 IENRIRESLGV 310


>gi|296135282|ref|YP_003642524.1| recA protein [Thiomonas intermedia K12]
 gi|294339384|emb|CAZ87740.1| Protein recA (Recombinase A) [Thiomonas sp. 3As]
 gi|295795404|gb|ADG30194.1| recA protein [Thiomonas intermedia K12]
          Length = 353

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/317 (68%), Positives = 273/317 (86%), Gaps = 1/317 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           SQI++ +GKG IM++   G     I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGK
Sbjct: 21  SQIEKQFGKGTIMRM-DDGEAQRDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK 79

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA+ QK GGTCAF+DAEHALD  YA KLGV L +LLISQPDTGEQALEI D L
Sbjct: 80  TTLTLQVIAEMQKLGGTCAFIDAEHALDVQYASKLGVQLPDLLISQPDTGEQALEIVDAL 139

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSG+VD+IVIDSVAALTP+AEIEG+MG+SLPG+QARLMSQALRKLT++I R+ C+++FI
Sbjct: 140 VRSGSVDMIVIDSVAALTPKAEIEGEMGDSLPGLQARLMSQALRKLTANIKRTNCLVIFI 199

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK  + + G++TRVKVVKNK+A
Sbjct: 200 NQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKKGEEVVGSETRVKVVKNKVA 259

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
            PFKQ EFDI+YGEGIS  GE++DLGV A +V+KSG+W+++ G+++GQG++N++ FL+ N
Sbjct: 260 PPFKQAEFDILYGEGISREGEIVDLGVLAKLVEKSGSWYAYNGEKIGQGKDNAREFLKSN 319

Query: 321 IEIAENIESLLRQNAGL 337
            +IA  IE+ +R + G+
Sbjct: 320 PDIAREIENKVRASLGV 336


>gi|284047740|ref|YP_003398079.1| recA protein [Acidaminococcus fermentans DSM 20731]
 gi|283951961|gb|ADB46764.1| recA protein [Acidaminococcus fermentans DSM 20731]
          Length = 362

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 221/330 (66%), Positives = 275/330 (83%), Gaps = 1/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K+KAL+AAL QI++ +GKG+IM+LG+  +    IE + +G+L LDIALG+GG P+GRI+
Sbjct: 6   EKNKALDAALKQIEKDFGKGSIMKLGAASAKMN-IETIPTGALSLDIALGVGGIPRGRII 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA++QK GG  AF+DAEHALD  YAR LGVD+ NLLISQPDTG
Sbjct: 65  EIYGPESSGKTTVALHMIAEAQKRGGYAAFIDAEHALDPEYARHLGVDIDNLLISQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGA+DIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  I
Sbjct: 125 EQALEICDALVRSGAIDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGVI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++S+   VFINQ+R K+GVMFG+PE TTGG ALKFYS++R+D+RRV S+K  + I GN T
Sbjct: 185 AKSRTATVFINQIREKVGVMFGNPEVTTGGRALKFYSTIRMDVRRVESLKSGNDIIGNHT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDIMYGEGIS  G L+DLGV+ +I++KSGAW+S+  QR+GQGR
Sbjct: 245 RVKVVKNKVAPPFKQAEFDIMYGEGISHEGCLVDLGVQYNILNKSGAWYSYGDQRIGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           EN+K FL+E+ ++A  +E+ +R  AGL AD
Sbjct: 305 ENTKTFLKEHPDMAAEVEARIRAAAGLPAD 334


>gi|188591287|ref|YP_001795887.1| recombinase a [Cupriavidus taiwanensis LMG 19424]
 gi|238692937|sp|B2AHB8|RECA_CUPTR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|170938181|emb|CAP63167.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Cupriavidus taiwanensis LMG 19424]
          Length = 354

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/329 (68%), Positives = 286/329 (86%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AALSQI++ +GKG+IM+LG  G + + I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 13  EKQKALAAALSQIEKQFGKGSIMRLGD-GEVEKDIQVVSTGSLGLDIALGVGGLPRGRVV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  +A+ QK GGTCAF+DAEHALD  YA KLGV++ +LLISQPDTG
Sbjct: 72  EIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVNYASKLGVNVGDLLISQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+I+IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 132 EQALEITDALVRSGSIDLIIIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGDDVIGNET 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK++ PF++  FDI+YG+GIS  GE+IDLGV A IV+KSGAW+S+ G+++GQG+
Sbjct: 252 KVKVVKNKVSPPFREAFFDILYGQGISRQGEIIDLGVDAKIVEKSGAWYSYNGEKIGQGK 311

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ +LREN +IA  IE+ +R   G+VA
Sbjct: 312 DNAREYLRENPDIAAEIENKVRAALGVVA 340


>gi|225630783|ref|YP_002727574.1| recombinase A [Wolbachia sp. wRi]
 gi|254790456|sp|C0R4E1|RECA_WOLWR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|225592764|gb|ACN95783.1| recombinase A [Wolbachia sp. wRi]
          Length = 355

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 214/322 (66%), Positives = 274/322 (85%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+ A+SQI++ +GKGAIM+L  + +  E I+ +S+GS+ LD ALG+GG PKGRI+
Sbjct: 11  DKQKALDNAISQIEKAFGKGAIMKL--KQNPVEKIDTISTGSIALDSALGVGGLPKGRII 68

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTLALH IA++QK GG+CAF+DAEHALD +YARKLGV   +L+ISQPDTG
Sbjct: 69  EIFGPESSGKTTLALHVIAEAQKKGGSCAFIDAEHALDVLYARKLGVSTDDLVISQPDTG 128

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL I + LV SGAVD+IVIDSVAALTPRAEIEGDMG+   G+QARL+S  LRKLTS++
Sbjct: 129 EQALHIVEYLVCSGAVDVIVIDSVAALTPRAEIEGDMGDQHMGLQARLLSHGLRKLTSAV 188

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++ CIL+FINQ+RMKIGV++G+PETTTGGNALKFY+SVRLDIR++G IKDK++ITGN+T
Sbjct: 189 SKANCILIFINQIRMKIGVVYGNPETTTGGNALKFYTSVRLDIRKIGVIKDKENITGNET 248

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++ +FDIMY EGIS  GE+ID+G K  +++K+GA++S+   RLGQGR
Sbjct: 249 RVKVVKNKVAPPFREAKFDIMYNEGISKLGEIIDMGAKLGVLEKAGAYYSYNNTRLGQGR 308

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           EN K +L+ N E+A  IE+ +R
Sbjct: 309 ENVKTYLKTNKEVANEIETKIR 330


>gi|296803032|gb|ADH51592.1| DNA recombinase [Burkholderia contaminans]
          Length = 305

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/306 (71%), Positives = 267/306 (87%), Gaps = 1/306 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLR 332
           IE+ +R
Sbjct: 300 IENRIR 305


>gi|254786787|ref|YP_003074216.1| recombinase A [Teredinibacter turnerae T7901]
 gi|259563346|sp|C5BMR1|RECA_TERTT RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|237684795|gb|ACR12059.1| DNA recombinase RecA [Teredinibacter turnerae T7901]
          Length = 342

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 213/322 (66%), Positives = 271/322 (84%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AAL QI R +GKG +M++G +    E I  VS+GSLGLD+ALGIGG PKGRIV
Sbjct: 4   NKEKALQAALQQIDRQFGKGTVMRMGDKE--LEAIPAVSTGSLGLDVALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++Q+ GGTCAFVDAEHALD IYA KLGV++ +L++SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAEAQRKGGTCAFVDAEHALDPIYAAKLGVNVDDLIVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALE+ DMLVRSGA+D++V+DSVAALTP+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEVADMLVRSGAIDVLVVDSVAALTPKAEIEGEMGDHHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+ +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GS+KD D + G++T
Sbjct: 182 KNANCLAIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSVKDGDEVIGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF I+YG GI+  GE+ID GVK  ++DK+GAW+S+ G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFKQTEFQILYGTGINRLGEVIDYGVKLGLIDKAGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N+  +LRE+ ++A+ +E  L+
Sbjct: 302 NNAIQYLREHSDVAQTLEDRLK 323


>gi|150171068|emb|CAO01517.1| DNA recombination protein [Burkholderia cenocepacia]
          Length = 308

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/309 (70%), Positives = 268/309 (86%), Gaps = 1/309 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM++G      E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRMGD-AEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  IAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI
Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK+A PF++  
Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPPFREAI 239

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  I
Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299

Query: 328 ESLLRQNAG 336
           E+ +R++ G
Sbjct: 300 ENRIRESLG 308


>gi|296837439|gb|ADH59578.1| DNA recombinase [Burkholderia cenocepacia]
          Length = 308

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/309 (70%), Positives = 269/309 (87%), Gaps = 1/309 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQNAGLV 338
            +R++ G+V
Sbjct: 300 RIRESLGVV 308


>gi|296803036|gb|ADH51594.1| DNA recombinase [Burkholderia contaminans]
          Length = 307

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/306 (71%), Positives = 267/306 (87%), Gaps = 1/306 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 3   FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 61

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 62  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 121

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 122 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 181

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 182 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 241

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 242 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 301

Query: 327 IESLLR 332
           IE+ +R
Sbjct: 302 IENRIR 307


>gi|308212794|gb|ADO21625.1| RecA [Burkholderia arboris]
 gi|308212796|gb|ADO21626.1| RecA [Burkholderia arboris]
 gi|308212798|gb|ADO21627.1| RecA [Burkholderia arboris]
 gi|308212800|gb|ADO21628.1| RecA [Burkholderia arboris]
          Length = 307

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/308 (71%), Positives = 268/308 (87%), Gaps = 1/308 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+VD+
Sbjct: 60  AELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSVDM 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG
Sbjct: 120 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  F
Sbjct: 180 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 239

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           DI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE
Sbjct: 240 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 299

Query: 329 SLLRQNAG 336
           + +R++ G
Sbjct: 300 NRIRESLG 307


>gi|260554248|ref|ZP_05826501.1| RecA/RadA recombinase [Acinetobacter sp. RUH2624]
 gi|260404628|gb|EEW98145.1| RecA/RadA recombinase [Acinetobacter sp. RUH2624]
          Length = 350

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 215/323 (66%), Positives = 269/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL+AALSQI++ +GK  +M+LG   +  + +E VS+GSL LDIALGIGG PKGRI+
Sbjct: 4   NKSKALQAALSQIEKQFGKNTVMRLGD--NTVQAVEAVSTGSLTLDIALGIGGLPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ L  IAQ QK+GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD G
Sbjct: 62  EIYGPESSGKTTMTLQAIAQCQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T + 
Sbjct: 122 EQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNA 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G +K+ D I G++T
Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNKMA PF++  F I+YG+G +  GEL+DL V+  IV K+GAW+S++G ++GQG+
Sbjct: 242 KVKVVKNKMAPPFREAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N   +  EN  IAE IE  +R+
Sbjct: 302 NNVIRYFEENKHIAEEIERNIRE 324


>gi|162769935|emb|CAP58283.1| DNA recombinase [Burkholderia contaminans]
          Length = 321

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/309 (70%), Positives = 269/309 (87%), Gaps = 1/309 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQNAGLV 338
            +R++ G+V
Sbjct: 300 RIRESLGVV 308


>gi|296837443|gb|ADH59580.1| DNA recombinase [Burkholderia contaminans]
          Length = 308

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/309 (70%), Positives = 269/309 (87%), Gaps = 1/309 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQNAGLV 338
            +R++ G+V
Sbjct: 300 RIRESLGVV 308


>gi|296837433|gb|ADH59575.1| DNA recombinase [Burkholderia contaminans]
          Length = 305

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/306 (71%), Positives = 267/306 (87%), Gaps = 1/306 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI
Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  
Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  I
Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299

Query: 328 ESLLRQ 333
           E+ +R+
Sbjct: 300 ENRIRE 305


>gi|296837375|gb|ADH59546.1| DNA recombinase [Burkholderia contaminans]
 gi|296837435|gb|ADH59576.1| DNA recombinase [Burkholderia contaminans]
          Length = 307

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/307 (71%), Positives = 268/307 (87%), Gaps = 1/307 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI
Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  
Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  I
Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299

Query: 328 ESLLRQN 334
           E+ +R++
Sbjct: 300 ENRIRES 306


>gi|20178057|sp|Q9APB2|RECA_CUPNE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|12659037|gb|AAK01164.1|AF312928_1 RecA [Cupriavidus necator]
          Length = 353

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/327 (69%), Positives = 284/327 (86%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AALSQI++ +GKG+IM+LG  G I + I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 13  EKQKALAAALSQIEKQFGKGSIMRLGD-GEIEQDIQVVSTGSLGLDIALGVGGLPRGRVV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  +A+ QK GGTCAF+DAEHALD  YA KLGVD+ NLLISQPDTG
Sbjct: 72  EIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVQYAGKLGVDVGNLLISQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQ LRKLT +I
Sbjct: 132 EQALEITDALVRSGSIDLIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQGLRKLTGTI 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGDEVVGNET 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK++ PF++  FDI+YG+GIS  GE+IDLGV A IV+K+GAW+S+ G+++GQG+
Sbjct: 252 KVKVVKNKVSPPFREAFFDILYGQGISRQGEIIDLGVDAKIVEKAGAWYSYNGEKIGQGK 311

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           +N++ +LREN +IA+ IE+ +R   G+
Sbjct: 312 DNAREYLRENPDIADEIENKVRLALGV 338


>gi|157326979|gb|ABV44602.1| RecA [Burkholderia ambifaria]
          Length = 316

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 216/308 (70%), Positives = 269/308 (87%), Gaps = 1/308 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+
Sbjct: 2   SIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAE 60

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IV
Sbjct: 61  LQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIV 120

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM
Sbjct: 121 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 180

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI
Sbjct: 181 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 240

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
           +YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ 
Sbjct: 241 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 300

Query: 331 LRQNAGLV 338
           +R++ G+V
Sbjct: 301 IRESLGVV 308


>gi|296803030|gb|ADH51591.1| DNA recombinase [Burkholderia contaminans]
          Length = 307

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/307 (71%), Positives = 268/307 (87%), Gaps = 1/307 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI
Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  
Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  I
Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299

Query: 328 ESLLRQN 334
           E+ +R++
Sbjct: 300 ENRIRES 306


>gi|95928608|ref|ZP_01311355.1| recA protein [Desulfuromonas acetoxidans DSM 684]
 gi|95135398|gb|EAT17050.1| recA protein [Desulfuromonas acetoxidans DSM 684]
          Length = 340

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/337 (64%), Positives = 281/337 (83%), Gaps = 4/337 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ +A++ A+ QI++ +GKG+IM+LG + ++   I  +S+GS+GLDIALGIGG P+GRI+
Sbjct: 5   NRKQAIDLAMGQIEKQFGKGSIMRLG-EDNVMRDISTISTGSIGLDIALGIGGVPRGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTLALH +A++QK GG  AFVDAEHALD  YARKLGV+  +LL+SQPDTG
Sbjct: 64  EVYGPESSGKTTLALHIVAEAQKKGGIAAFVDAEHALDITYARKLGVNADDLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI ++LVRSGA+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 124 EQALEIVEVLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSHMGLQARLMSQALRKLTATI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S C ++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVR+DIR++ ++K    + G++T
Sbjct: 184 SKSNCCVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRMDIRKIATLKQGQDVIGSRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK A PFK+ EFDIMYGEGIS  GEL+DLGV   IV+KSGAWFS+  +R+GQGR
Sbjct: 244 RVKVVKNKTAPPFKEAEFDIMYGEGISKVGELVDLGVANDIVNKSGAWFSYGDERIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           ENSK +L++N E+A  IE  + +  GL   S + EPA
Sbjct: 304 ENSKQYLKDNAEVASEIEQQILELYGL---SSIDEPA 337


>gi|71279561|ref|YP_270789.1| recA protein [Colwellia psychrerythraea 34H]
 gi|123760965|sp|Q47WN3|RECA_COLP3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|71145301|gb|AAZ25774.1| recA protein [Colwellia psychrerythraea 34H]
          Length = 345

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 214/322 (66%), Positives = 272/322 (84%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL AAL+QI+R +GKG+IM+LG   ++   +E +S+GSLGLDIALG GG P GR+V
Sbjct: 4   DKEKALSAALAQIERQFGKGSIMKLGDNTTM--DVETISTGSLGLDIALGAGGLPMGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++Q+ G  CAF+DAEHALD +YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLEVIAEAQRNGKVCAFIDAEHALDPVYAEKLGVNIDELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML RSGA+D+IV+DSVAALTP+AEIEGDMG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEIVDMLTRSGAIDVIVVDSVAALTPKAEIEGDMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+ D I GN+T
Sbjct: 182 KKSNTMLIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKNGDEIVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF I+YGEGI+  GELI+LGVK   V+K+GAW+S  G+R+GQG+
Sbjct: 242 RVKVVKNKIAPPFKQAEFQILYGEGINNLGELIELGVKHEFVEKAGAWYSCNGERIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N+  +L E+ E+A+++++ LR
Sbjct: 302 ANAAKYLDEHPEMAKDVDTKLR 323


>gi|73540233|ref|YP_294753.1| recombinase A [Ralstonia eutropha JMP134]
 gi|123760257|sp|Q475M4|RECA_CUPPJ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|72117646|gb|AAZ59909.1| RecA protein [Ralstonia eutropha JMP134]
          Length = 353

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 227/342 (66%), Positives = 289/342 (84%), Gaps = 1/342 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AALSQI++ +GKG+IM++G  G + + I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 13  EKQKALAAALSQIEKQFGKGSIMRMGD-GEVEKDIQVVSTGSLGLDIALGVGGLPRGRVV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  +A+ QK GGTCAF+DAEHALD  YA KLGVD+  LLISQPDTG
Sbjct: 72  EIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVNYASKLGVDVGELLISQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 132 EQALEITDALVRSGSIDLIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGDDVIGNET 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK++ PF++  FDI+YG+GIS  GE+IDLGV A IV+KSGAW+S+ G ++GQG+
Sbjct: 252 KVKVVKNKVSPPFREAFFDILYGQGISRQGEIIDLGVDAKIVEKSGAWYSYNGDKIGQGK 311

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           +N++ +LREN +IA+ IE+ +R   G+   + +    + T+D
Sbjct: 312 DNAREYLRENPDIAQEIENKVRAALGVAPMNSVPAAEVVTED 353


>gi|145581054|gb|ABP87673.1| RecA [Burkholderia sp. 'isolate BCCU4']
          Length = 309

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/308 (70%), Positives = 268/308 (87%), Gaps = 1/308 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ 
Sbjct: 1   IMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEL 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVI
Sbjct: 60  QKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVI 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMF
Sbjct: 120 DSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMF 179

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+
Sbjct: 180 GNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDIL 239

Query: 272 YGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLL 331
           YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ +
Sbjct: 240 YGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRI 299

Query: 332 RQNAGLVA 339
           R++ G+VA
Sbjct: 300 RESLGVVA 307


>gi|218780785|ref|YP_002432103.1| recA protein [Desulfatibacillum alkenivorans AK-01]
 gi|218762169|gb|ACL04635.1| recA protein [Desulfatibacillum alkenivorans AK-01]
          Length = 353

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/327 (66%), Positives = 272/327 (83%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK+KAL+ A+SQI+R +GKG++M+LG Q  +   + V+ +GS+ LD+ALGIGG P+GRIV
Sbjct: 6   DKTKALDTAISQIERQFGKGSVMKLGDQ--VAMKVPVIPTGSIALDLALGIGGLPRGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH +A++Q  GG  AFVDAEHALD  YA+KLGV+   LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLALHAVAEAQARGGVAAFVDAEHALDVSYAKKLGVNCDELLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGAVDI+VIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT +I
Sbjct: 124 EQALEIADMLVRSGAVDILVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTGTI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++++  L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+     GN+ 
Sbjct: 184 NKTRTCLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGTESVGNRA 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +V+VVKNKMA PFK+ EFD+MYGEGIS  G+L+D GV   I+DKSGAW+SF G+R+GQGR
Sbjct: 244 KVRVVKNKMAPPFKEAEFDVMYGEGISKTGDLLDAGVNLEIIDKSGAWYSFDGERIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN K F +EN ++ +    ++R   G+
Sbjct: 304 ENVKRFFKENPDVYDKALKMIRNKLGI 330


>gi|296837457|gb|ADH59587.1| DNA recombinase [Burkholderia contaminans]
          Length = 312

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/311 (70%), Positives = 269/311 (86%), Gaps = 1/311 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 3   FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 61

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 62  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 121

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG QAR MSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 122 DMIVIDSVAALVPKAEIEGEMGDSLPGRQARRMSQALRKLTGTIKRTNCLVIFINQIRMK 181

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 182 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 241

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 242 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 301

Query: 327 IESLLRQNAGL 337
           IE+ +R++ G+
Sbjct: 302 IENRIRESLGV 312


>gi|170664154|gb|ACB28496.1| RecA [Burkholderia cepacia]
          Length = 310

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/311 (69%), Positives = 270/311 (86%), Gaps = 1/311 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+R K
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRTK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGL 337
           IE+ +R++ G+
Sbjct: 300 IENRIRESLGV 310


>gi|296803104|gb|ADH51628.1| DNA recombinase [Burkholderia cenocepacia]
          Length = 308

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/309 (70%), Positives = 269/309 (87%), Gaps = 1/309 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQNAGLV 338
            +R++ G+V
Sbjct: 300 RIRESLGVV 308


>gi|157326909|gb|ABV44567.1| RecA [Burkholderia cenocepacia]
          Length = 305

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/306 (70%), Positives = 267/306 (87%), Gaps = 1/306 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI
Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299

Query: 324 AENIES 329
           A  IE+
Sbjct: 300 AREIEN 305


>gi|296837405|gb|ADH59561.1| DNA recombinase [Burkholderia cenocepacia]
          Length = 307

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/307 (71%), Positives = 268/307 (87%), Gaps = 1/307 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI
Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  
Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  I
Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299

Query: 328 ESLLRQN 334
           E+ +R++
Sbjct: 300 ENRIRES 306


>gi|296803080|gb|ADH51616.1| DNA recombinase [Burkholderia contaminans]
          Length = 307

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/308 (70%), Positives = 268/308 (87%), Gaps = 1/308 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+
Sbjct: 60  AELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG
Sbjct: 120 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  F
Sbjct: 180 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 239

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           DI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE
Sbjct: 240 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 299

Query: 329 SLLRQNAG 336
           + +R++ G
Sbjct: 300 NRIRESLG 307


>gi|296803094|gb|ADH51623.1| DNA recombinase [Burkholderia seminalis]
          Length = 312

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 216/313 (69%), Positives = 271/313 (86%), Gaps = 1/313 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN +I   
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPQIVRE 299

Query: 327 IESLLRQNAGLVA 339
           IE+ +R++ G+ +
Sbjct: 300 IENRIRESLGVAS 312


>gi|157326987|gb|ABV44606.1| RecA [Burkholderia multivorans]
          Length = 307

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/308 (70%), Positives = 269/308 (87%), Gaps = 1/308 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVRSG++D+
Sbjct: 60  AELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRSGSIDM 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG
Sbjct: 120 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  F
Sbjct: 180 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 239

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           DI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE
Sbjct: 240 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 299

Query: 329 SLLRQNAG 336
           + +R++ G
Sbjct: 300 NRIRESLG 307


>gi|293609243|ref|ZP_06691545.1| recA protein [Acinetobacter sp. SH024]
 gi|292827695|gb|EFF86058.1| recA protein [Acinetobacter sp. SH024]
 gi|325122507|gb|ADY82030.1| recombinase A [Acinetobacter calcoaceticus PHEA-2]
          Length = 348

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 216/323 (66%), Positives = 268/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL+AALSQI++ +GK  +M+LG   +  + +E VS+GSL LDIALGIGG PKGRIV
Sbjct: 4   NKSKALQAALSQIEKQFGKNTVMRLGD--NTVQAVEAVSTGSLTLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ L  IAQ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD G
Sbjct: 62  EIYGPESSGKTTMTLQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T + 
Sbjct: 122 EQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNA 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G +K+ D I G++T
Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIIGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFK+  F I+YG+G +  GEL+DL V+  IV K+GAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKMAPPFKEAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N      EN ++A  IE ++R+
Sbjct: 302 NNVIRHFEENPQMAGEIEKIIRE 324


>gi|313668561|ref|YP_004048845.1| RecA protein [Neisseria lactamica ST-640]
 gi|313006023|emb|CBN87482.1| RecA protein [Neisseria lactamica 020-06]
          Length = 348

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 222/328 (67%), Positives = 278/328 (84%), Gaps = 3/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           DKSKAL AAL+QI++ +GKGAIM++ GSQ    E +EV+S+GSLGLD+ALG+GG P+GRI
Sbjct: 4   DKSKALAAALAQIEKSFGKGAIMKMDGSQQE--ENLEVISTGSLGLDLALGVGGLPRGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEI+GPESSGKTTL L  +AQ QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDT
Sbjct: 62  VEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSG +D++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  
Sbjct: 122 GEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGH 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR GSIK  + + GN+
Sbjct: 182 IKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNE 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKV+KNK+A PF+QVEFDI+YGEGIS+ GELID+GVK  I++KSGAW+S+ G ++GQG
Sbjct: 242 TRVKVIKNKVAPPFRQVEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           ++N +++L+EN E+A  I++ +R   G+
Sbjct: 302 KDNVRVWLKENPEVANEIDAKIRALNGV 329


>gi|296803006|gb|ADH51579.1| DNA recombinase [Burkholderia contaminans]
          Length = 303

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/303 (71%), Positives = 266/303 (87%), Gaps = 1/303 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LV
Sbjct: 60  TLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FIN
Sbjct: 120 RSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ 
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN 
Sbjct: 240 PFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENP 299

Query: 322 EIA 324
           EIA
Sbjct: 300 EIA 302


>gi|77457402|ref|YP_346907.1| recombinase A [Pseudomonas fluorescens Pf0-1]
 gi|123772305|sp|Q3KH38|RECA_PSEPF RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|77381405|gb|ABA72918.1| recombinase A [Pseudomonas fluorescens Pf0-1]
          Length = 352

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 224/350 (64%), Positives = 278/350 (79%), Gaps = 5/350 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI+R +GKGA+M++G Q    + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKKALAAALGQIERQFGKGAVMRMGDQDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAQAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+ASPF+Q EF I+YG+GI   GE+IDLGV    V+KSGAW++++G ++GQG+
Sbjct: 242 RVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ---NAGLVADSLLQEPAINTKDDADKD 357
            NS  FL +N E+A  +E  LR    +  ++ADS          D AD D
Sbjct: 302 ANSAKFLADNPEVAAKLEKQLRDKLLSPAVIADSKASAVKETEDDLADAD 351


>gi|325144735|gb|EGC67030.1| protein RecA [Neisseria meningitidis M01-240013]
          Length = 348

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/328 (67%), Positives = 278/328 (84%), Gaps = 3/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           DKSKAL AAL+QI++ +GKGAIM++ GSQ    E +EV+S+GSLGLD+ALG+GG P+GRI
Sbjct: 4   DKSKALAAALAQIEKSFGKGAIMKMDGSQQE--ENLEVISTGSLGLDLALGVGGLPRGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEI+GPESSGKTTL L  +AQ QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDT
Sbjct: 62  VEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSG VD++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  
Sbjct: 122 GEQALEICDTLVRSGGVDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGH 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR GSIK  + + GN+
Sbjct: 182 IKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNE 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+GVK  I++KSGAW+S+ G ++GQG
Sbjct: 242 TRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           ++N +++L+EN EIA+ I++ +R   G+
Sbjct: 302 KDNVRVWLKENPEIADEIDAKIRALNGV 329


>gi|126667872|ref|ZP_01738838.1| recA protein [Marinobacter sp. ELB17]
 gi|126627688|gb|EAZ98319.1| recA protein [Marinobacter sp. ELB17]
          Length = 371

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 221/352 (62%), Positives = 279/352 (79%), Gaps = 4/352 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL AAL+QI+R +GKGAIM++G      E I  VS+GSLGLD+ALGIGG P GR+ 
Sbjct: 4   NRKKALSAALTQIERQFGKGAIMKMGDHPR--EAIPSVSTGSLGLDVALGIGGLPYGRVC 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD  YA KLGV++  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAEAQKQGKTCAFVDAEHALDPQYAEKLGVNVDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS AVD+I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKL  ++
Sbjct: 122 EQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLNGNV 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++KD D +TGN+T
Sbjct: 182 KNANVLLIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKDGDEVTGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI    E++D+GVK   VDK+GAW+++ G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYRMAEVVDMGVKEGFVDKAGAWYAYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
            N+  FL EN E+A+ IE+ +R    L+   + ++ A +   DA KD   NV
Sbjct: 302 ANACKFLEENPEMAKEIEAKVRDK--LMPKPVKKDAAKDAGKDAGKDAGKNV 351


>gi|289662679|ref|ZP_06484260.1| recombinase A [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 344

 Score =  458 bits (1179), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/325 (67%), Positives = 276/325 (84%), Gaps = 4/325 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AALSQI++ +GKG++M++G +  + E +EV+ +GSL LDIALGIGG PKGR+V
Sbjct: 4   NKKRALSAALSQIEKQFGKGSVMRMGDR--VIEAVEVIPTGSLMLDIALGIGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAQCQKLGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS +VDI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSSSVDIVVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  ++VFINQ+RMKIGVM    SPE TTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 182 KRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELID+GV+A +VDK+GAW+S+  +R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVDKAGAWYSYGDERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333
           G++N++ +LR+N ++A  +E+ LR+
Sbjct: 302 GKDNARTYLRDNPQVAVRLEAELRE 326


>gi|170766128|ref|ZP_02900939.1| protein RecA [Escherichia albertii TW07627]
 gi|170125274|gb|EDS94205.1| protein RecA [Escherichia albertii TW07627]
          Length = 353

 Score =  458 bits (1179), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/352 (62%), Positives = 285/352 (80%), Gaps = 11/352 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
            N+  +L++N E A+ IE  +R+        LL  P  N+  D   DD++ V
Sbjct: 304 ANATAWLKDNPETAKEIEKKVRE-------LLLSNP--NSTPDFSVDDSEGV 346


>gi|15832810|ref|NP_311583.1| recombinase A [Escherichia coli O157:H7 str. Sakai]
 gi|16130606|ref|NP_417179.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia coli str. K-12 substr.
           MG1655]
 gi|26249094|ref|NP_755134.1| recombinase A [Escherichia coli CFT073]
 gi|30064059|ref|NP_838230.1| recombinase A [Shigella flexneri 2a str. 2457T]
 gi|56480164|ref|NP_708507.2| recombinase A [Shigella flexneri 2a str. 301]
 gi|74313264|ref|YP_311683.1| recombinase A [Shigella sonnei Ss046]
 gi|82545225|ref|YP_409172.1| recombinase A [Shigella boydii Sb227]
 gi|82778068|ref|YP_404417.1| recombinase A [Shigella dysenteriae Sd197]
 gi|89109486|ref|AP_003266.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia coli str. K-12 substr.
           W3110]
 gi|91212058|ref|YP_542044.1| recombinase A [Escherichia coli UTI89]
 gi|110642819|ref|YP_670549.1| recombinase A [Escherichia coli 536]
 gi|110806675|ref|YP_690195.1| recombinase A [Shigella flexneri 5 str. 8401]
 gi|157156823|ref|YP_001464007.1| recombinase A [Escherichia coli E24377A]
 gi|157162145|ref|YP_001459463.1| recombinase A [Escherichia coli HS]
 gi|168749979|ref|ZP_02775001.1| protein RecA [Escherichia coli O157:H7 str. EC4113]
 gi|168755441|ref|ZP_02780448.1| protein RecA [Escherichia coli O157:H7 str. EC4401]
 gi|168762905|ref|ZP_02787912.1| protein RecA [Escherichia coli O157:H7 str. EC4501]
 gi|168768787|ref|ZP_02793794.1| protein RecA [Escherichia coli O157:H7 str. EC4486]
 gi|168774772|ref|ZP_02799779.1| protein RecA [Escherichia coli O157:H7 str. EC4196]
 gi|168778678|ref|ZP_02803685.1| protein RecA [Escherichia coli O157:H7 str. EC4076]
 gi|168787951|ref|ZP_02812958.1| protein RecA [Escherichia coli O157:H7 str. EC869]
 gi|168800223|ref|ZP_02825230.1| protein RecA [Escherichia coli O157:H7 str. EC508]
 gi|170019055|ref|YP_001724009.1| recombinase A [Escherichia coli ATCC 8739]
 gi|170683219|ref|YP_001744846.1| recombinase A [Escherichia coli SMS-3-5]
 gi|187730972|ref|YP_001881552.1| recombinase A [Shigella boydii CDC 3083-94]
 gi|188495073|ref|ZP_03002343.1| protein RecA [Escherichia coli 53638]
 gi|191167104|ref|ZP_03028925.1| protein RecA [Escherichia coli B7A]
 gi|191171319|ref|ZP_03032868.1| protein RecA [Escherichia coli F11]
 gi|193065012|ref|ZP_03046087.1| protein RecA [Escherichia coli E22]
 gi|193069688|ref|ZP_03050640.1| protein RecA [Escherichia coli E110019]
 gi|194427861|ref|ZP_03060407.1| protein RecA [Escherichia coli B171]
 gi|194432994|ref|ZP_03065277.1| protein RecA [Shigella dysenteriae 1012]
 gi|194439005|ref|ZP_03071089.1| protein RecA [Escherichia coli 101-1]
 gi|195938448|ref|ZP_03083830.1| recombinase A [Escherichia coli O157:H7 str. EC4024]
 gi|208807916|ref|ZP_03250253.1| protein RecA [Escherichia coli O157:H7 str. EC4206]
 gi|208811896|ref|ZP_03253225.1| protein RecA [Escherichia coli O157:H7 str. EC4045]
 gi|208820218|ref|ZP_03260538.1| protein RecA [Escherichia coli O157:H7 str. EC4042]
 gi|209397319|ref|YP_002272162.1| protein RecA [Escherichia coli O157:H7 str. EC4115]
 gi|209920138|ref|YP_002294222.1| recombinase A [Escherichia coli SE11]
 gi|215488018|ref|YP_002330449.1| recombinase A [Escherichia coli O127:H6 str. E2348/69]
 gi|217327391|ref|ZP_03443474.1| protein RecA [Escherichia coli O157:H7 str. TW14588]
 gi|218547788|ref|YP_002381579.1| recombinase A [Escherichia fergusonii ATCC 35469]
 gi|218555241|ref|YP_002388154.1| recombinase A [Escherichia coli IAI1]
 gi|218559687|ref|YP_002392600.1| recombinase A [Escherichia coli S88]
 gi|218690821|ref|YP_002399033.1| recombinase A [Escherichia coli ED1a]
 gi|218696290|ref|YP_002403957.1| recombinase A [Escherichia coli 55989]
 gi|218701189|ref|YP_002408818.1| recombinase A [Escherichia coli IAI39]
 gi|218706193|ref|YP_002413712.1| recombinase A [Escherichia coli UMN026]
 gi|238901836|ref|YP_002927632.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia coli BW2952]
 gi|253772446|ref|YP_003035277.1| recombinase A [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162630|ref|YP_003045738.1| recombinase A [Escherichia coli B str. REL606]
 gi|254794641|ref|YP_003079478.1| recombinase A [Escherichia coli O157:H7 str. TW14359]
 gi|256019524|ref|ZP_05433389.1| recombinase A [Shigella sp. D9]
 gi|256024794|ref|ZP_05438659.1| recombinase A [Escherichia sp. 4_1_40B]
 gi|260845341|ref|YP_003223119.1| DNA strand exchange and recombination protein RecA with protease
           and nuclease activity [Escherichia coli O103:H2 str.
           12009]
 gi|260856804|ref|YP_003230695.1| DNA strand exchange and recombination protein RecA with protease
           and nuclease activity [Escherichia coli O26:H11 str.
           11368]
 gi|260869372|ref|YP_003235774.1| DNA strand exchange and recombination protein RecA with protease
           and nuclease activity [Escherichia coli O111:H- str.
           11128]
 gi|261225991|ref|ZP_05940272.1| recombinase A [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256751|ref|ZP_05949284.1| recombinase A [Escherichia coli O157:H7 str. FRIK966]
 gi|291284026|ref|YP_003500844.1| RecA/GFP fusion protein [Escherichia coli O55:H7 str. CB9615]
 gi|293406190|ref|ZP_06650116.1| recA [Escherichia coli FVEC1412]
 gi|298381928|ref|ZP_06991525.1| recA [Escherichia coli FVEC1302]
 gi|301026641|ref|ZP_07190058.1| protein RecA [Escherichia coli MS 196-1]
 gi|306812423|ref|ZP_07446621.1| recombinase A [Escherichia coli NC101]
 gi|307139386|ref|ZP_07498742.1| recombinase A [Escherichia coli H736]
 gi|307314416|ref|ZP_07594021.1| recA protein [Escherichia coli W]
 gi|309786223|ref|ZP_07680851.1| protein RecA [Shigella dysenteriae 1617]
 gi|312965613|ref|ZP_07779843.1| protein RecA [Escherichia coli 2362-75]
 gi|312973092|ref|ZP_07787265.1| protein RecA [Escherichia coli 1827-70]
 gi|331658804|ref|ZP_08359746.1| protein RecA [Escherichia coli TA206]
 gi|331664250|ref|ZP_08365156.1| protein RecA [Escherichia coli TA143]
 gi|331669431|ref|ZP_08370277.1| protein RecA [Escherichia coli TA271]
 gi|331684311|ref|ZP_08384903.1| protein RecA [Escherichia coli H299]
 gi|67471975|sp|P0A7G6|RECA_ECOLI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|67471976|sp|P0A7G7|RECA_ECOL6 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|67471977|sp|P0A7G8|RECA_ECO57 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|67471978|sp|P0A7G9|RECA_SHIFL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|122422732|sp|Q1R801|RECA_ECOUT RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123047968|sp|Q0T1C5|RECA_SHIF8 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123147796|sp|Q0TEI1|RECA_ECOL5 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123558826|sp|Q31X64|RECA_SHIBS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123561810|sp|Q32CM9|RECA_SHIDS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123773466|sp|Q3YYG4|RECA_SHISS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166918709|sp|A7ZQC8|RECA_ECO24 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166918710|sp|A8A3H6|RECA_ECOHS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|189039594|sp|B1IUY0|RECA_ECOLC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226723627|sp|B5Z2B0|RECA_ECO5E RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226723628|sp|B6I685|RECA_ECOSE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226737756|sp|B7MKG8|RECA_ECO45 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226737757|sp|B7NSH9|RECA_ECO7I RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226737758|sp|B7M9D6|RECA_ECO8A RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226737759|sp|B7N6S9|RECA_ECOLU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226737760|sp|B1LQ17|RECA_ECOSM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226737761|sp|B7LW30|RECA_ESCF3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238691761|sp|B2U047|RECA_SHIB3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|254790432|sp|B7UHB7|RECA_ECO27 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|254790433|sp|B7LEB1|RECA_ECO55 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|254790434|sp|B7MYJ9|RECA_ECO81 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|259563334|sp|C4ZYU4|RECA_ECOBW RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|2098390|pdb|2REC|A Chain A, Reca Hexamer Model, Electron Microscopy
 gi|2098391|pdb|2REC|B Chain B, Reca Hexamer Model, Electron Microscopy
 gi|2098392|pdb|2REC|C Chain C, Reca Hexamer Model, Electron Microscopy
 gi|2098393|pdb|2REC|D Chain D, Reca Hexamer Model, Electron Microscopy
 gi|2098394|pdb|2REC|E Chain E, Reca Hexamer Model, Electron Microscopy
 gi|2098395|pdb|2REC|F Chain F, Reca Hexamer Model, Electron Microscopy
 gi|26109501|gb|AAN81704.1|AE016765_106 RecA protein [Escherichia coli CFT073]
 gi|42673|emb|CAA23618.1| recA gene product [Escherichia coli]
 gi|1789051|gb|AAC75741.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia coli str. K-12 substr.
           MG1655]
 gi|6006602|emb|CAB56806.1| recA [Shigella flexneri]
 gi|13363027|dbj|BAB36979.1| RecA protein [Escherichia coli O157:H7 str. Sakai]
 gi|30042315|gb|AAP18040.1| DNA-dependent ATPase, DNA- and ATP-dependent coprotease [Shigella
           flexneri 2a str. 2457T]
 gi|56383715|gb|AAN44214.2| DNA-dependent ATPase, DNA- and ATP-dependent coprotease [Shigella
           flexneri 2a str. 301]
 gi|73856741|gb|AAZ89448.1| DNA-dependent ATPase [Shigella sonnei Ss046]
 gi|81242216|gb|ABB62926.1| DNA-dependent ATPase, DNA- and ATP-dependent coprotease [Shigella
           dysenteriae Sd197]
 gi|81246636|gb|ABB67344.1| DNA-dependent ATPase, DNA- and ATP-dependent coprotease [Shigella
           boydii Sb227]
 gi|85675524|dbj|BAA16561.2| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia coli str. K12 substr.
           W3110]
 gi|91073632|gb|ABE08513.1| RecA protein [Escherichia coli UTI89]
 gi|110344411|gb|ABG70648.1| RecA protein [Escherichia coli 536]
 gi|110616223|gb|ABF04890.1| recombinase A [Shigella flexneri 5 str. 8401]
 gi|157067825|gb|ABV07080.1| protein RecA [Escherichia coli HS]
 gi|157078853|gb|ABV18561.1| protein RecA [Escherichia coli E24377A]
 gi|169753983|gb|ACA76682.1| recA protein [Escherichia coli ATCC 8739]
 gi|170520937|gb|ACB19115.1| protein RecA [Escherichia coli SMS-3-5]
 gi|187427964|gb|ACD07238.1| protein RecA [Shigella boydii CDC 3083-94]
 gi|187769610|gb|EDU33454.1| protein RecA [Escherichia coli O157:H7 str. EC4196]
 gi|188015763|gb|EDU53885.1| protein RecA [Escherichia coli O157:H7 str. EC4113]
 gi|188490272|gb|EDU65375.1| protein RecA [Escherichia coli 53638]
 gi|189003321|gb|EDU72307.1| protein RecA [Escherichia coli O157:H7 str. EC4076]
 gi|189357312|gb|EDU75731.1| protein RecA [Escherichia coli O157:H7 str. EC4401]
 gi|189362165|gb|EDU80584.1| protein RecA [Escherichia coli O157:H7 str. EC4486]
 gi|189366842|gb|EDU85258.1| protein RecA [Escherichia coli O157:H7 str. EC4501]
 gi|189372187|gb|EDU90603.1| protein RecA [Escherichia coli O157:H7 str. EC869]
 gi|189377451|gb|EDU95867.1| protein RecA [Escherichia coli O157:H7 str. EC508]
 gi|190902886|gb|EDV62614.1| protein RecA [Escherichia coli B7A]
 gi|190908253|gb|EDV67843.1| protein RecA [Escherichia coli F11]
 gi|192927309|gb|EDV81928.1| protein RecA [Escherichia coli E22]
 gi|192957051|gb|EDV87502.1| protein RecA [Escherichia coli E110019]
 gi|194414094|gb|EDX30370.1| protein RecA [Escherichia coli B171]
 gi|194418721|gb|EDX34807.1| protein RecA [Shigella dysenteriae 1012]
 gi|194422126|gb|EDX38129.1| protein RecA [Escherichia coli 101-1]
 gi|208727717|gb|EDZ77318.1| protein RecA [Escherichia coli O157:H7 str. EC4206]
 gi|208733173|gb|EDZ81860.1| protein RecA [Escherichia coli O157:H7 str. EC4045]
 gi|208740341|gb|EDZ88023.1| protein RecA [Escherichia coli O157:H7 str. EC4042]
 gi|209158719|gb|ACI36152.1| protein RecA [Escherichia coli O157:H7 str. EC4115]
 gi|209762078|gb|ACI79351.1| RecA protein [Escherichia coli]
 gi|209762080|gb|ACI79352.1| RecA protein [Escherichia coli]
 gi|209762082|gb|ACI79353.1| RecA protein [Escherichia coli]
 gi|209762084|gb|ACI79354.1| RecA protein [Escherichia coli]
 gi|209762086|gb|ACI79355.1| RecA protein [Escherichia coli]
 gi|209913397|dbj|BAG78471.1| recombinase/peptidase [Escherichia coli SE11]
 gi|215266090|emb|CAS10510.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217319758|gb|EEC28183.1| protein RecA [Escherichia coli O157:H7 str. TW14588]
 gi|218353022|emb|CAU98847.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia coli 55989]
 gi|218355329|emb|CAQ87936.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia fergusonii ATCC 35469]
 gi|218362009|emb|CAQ99616.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia coli IAI1]
 gi|218366456|emb|CAR04208.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia coli S88]
 gi|218371175|emb|CAR19006.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia coli IAI39]
 gi|218428385|emb|CAR09165.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia coli ED1a]
 gi|218433290|emb|CAR14190.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia coli UMN026]
 gi|222034392|emb|CAP77134.1| Protein recA [Escherichia coli LF82]
 gi|238860843|gb|ACR62841.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia coli BW2952]
 gi|242378256|emb|CAQ33031.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia coli BL21(DE3)]
 gi|253323490|gb|ACT28092.1| recA protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974531|gb|ACT40202.1| recombinase A [Escherichia coli B str. REL606]
 gi|253978698|gb|ACT44368.1| recombinase A [Escherichia coli BL21(DE3)]
 gi|254594041|gb|ACT73402.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia coli O157:H7 str.
           TW14359]
 gi|257755453|dbj|BAI26955.1| DNA strand exchange and recombination protein RecA with protease
           and nuclease activity [Escherichia coli O26:H11 str.
           11368]
 gi|257760488|dbj|BAI31985.1| DNA strand exchange and recombination protein RecA with protease
           and nuclease activity [Escherichia coli O103:H2 str.
           12009]
 gi|257765728|dbj|BAI37223.1| DNA strand exchange and recombination protein RecA with protease
           and nuclease activity [Escherichia coli O111:H- str.
           11128]
 gi|281179702|dbj|BAI56032.1| recombinase/peptidase [Escherichia coli SE15]
 gi|281602069|gb|ADA75053.1| recombinase A [Shigella flexneri 2002017]
 gi|284822314|gb|ADB98013.1| RecA [Helper vector pTKRED]
 gi|284922635|emb|CBG35723.1| RecA protein (recombinase A) [Escherichia coli 042]
 gi|290763899|gb|ADD57860.1| RecA/GFP fusion protein [Escherichia coli O55:H7 str. CB9615]
 gi|291426196|gb|EFE99228.1| recA [Escherichia coli FVEC1412]
 gi|294490461|gb|ADE89217.1| protein RecA [Escherichia coli IHE3034]
 gi|298277068|gb|EFI18584.1| recA [Escherichia coli FVEC1302]
 gi|299879628|gb|EFI87839.1| protein RecA [Escherichia coli MS 196-1]
 gi|305854461|gb|EFM54899.1| recombinase A [Escherichia coli NC101]
 gi|306905984|gb|EFN36505.1| recA protein [Escherichia coli W]
 gi|307554673|gb|ADN47448.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia coli ABU 83972]
 gi|307625732|gb|ADN70036.1| recombinase A [Escherichia coli UM146]
 gi|308925968|gb|EFP71447.1| protein RecA [Shigella dysenteriae 1617]
 gi|309703058|emb|CBJ02390.1| RecA protein (recombinase A) [Escherichia coli ETEC H10407]
 gi|310333034|gb|EFQ00248.1| protein RecA [Escherichia coli 1827-70]
 gi|312289762|gb|EFR17652.1| protein RecA [Escherichia coli 2362-75]
 gi|312947227|gb|ADR28054.1| recombinase A [Escherichia coli O83:H1 str. NRG 857C]
 gi|313648348|gb|EFS12792.1| protein RecA [Shigella flexneri 2a str. 2457T]
 gi|315061975|gb|ADT76302.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia coli W]
 gi|315615084|gb|EFU95721.1| protein RecA [Escherichia coli 3431]
 gi|320180881|gb|EFW55804.1| RecA protein [Shigella boydii ATCC 9905]
 gi|320186486|gb|EFW61214.1| RecA protein [Shigella flexneri CDC 796-83]
 gi|320189028|gb|EFW63687.1| RecA protein [Escherichia coli O157:H7 str. EC1212]
 gi|320194839|gb|EFW69468.1| RecA protein [Escherichia coli WV_060327]
 gi|320197702|gb|EFW72311.1| RecA protein [Escherichia coli EC4100B]
 gi|320640342|gb|EFX09881.1| recombinase A [Escherichia coli O157:H7 str. G5101]
 gi|320645889|gb|EFX14870.1| recombinase A [Escherichia coli O157:H- str. 493-89]
 gi|320651189|gb|EFX19624.1| recombinase A [Escherichia coli O157:H- str. H 2687]
 gi|320656739|gb|EFX24627.1| recombinase A [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320662282|gb|EFX29679.1| recombinase A [Escherichia coli O55:H7 str. USDA 5905]
 gi|320667333|gb|EFX34291.1| recombinase A [Escherichia coli O157:H7 str. LSU-61]
 gi|323154910|gb|EFZ41102.1| protein RecA [Escherichia coli EPECa14]
 gi|323159800|gb|EFZ45772.1| protein RecA [Escherichia coli E128010]
 gi|323167130|gb|EFZ52848.1| protein RecA [Shigella sonnei 53G]
 gi|323173019|gb|EFZ58650.1| protein RecA [Escherichia coli LT-68]
 gi|323180117|gb|EFZ65669.1| protein RecA [Escherichia coli 1180]
 gi|323183222|gb|EFZ68619.1| protein RecA [Escherichia coli 1357]
 gi|323188420|gb|EFZ73706.1| protein RecA [Escherichia coli RN587/1]
 gi|323377443|gb|ADX49711.1| recA protein [Escherichia coli KO11]
 gi|323935747|gb|EGB32061.1| recA bacterial DNA recombination protein [Escherichia coli E1520]
 gi|323941471|gb|EGB37654.1| recA DNA recombination protein [Escherichia coli E482]
 gi|323946423|gb|EGB42451.1| recA bacterial DNA recombination protein [Escherichia coli H120]
 gi|323951083|gb|EGB46959.1| recA DNA recombination protein [Escherichia coli H252]
 gi|323957091|gb|EGB52816.1| recA DNA recombination protein [Escherichia coli H263]
 gi|323960642|gb|EGB56268.1| recA DNA recombination protein [Escherichia coli H489]
 gi|323966843|gb|EGB62272.1| recA DNA recombination protein [Escherichia coli M863]
 gi|323971512|gb|EGB66746.1| recA DNA recombination protein [Escherichia coli TA007]
 gi|323978693|gb|EGB73775.1| recA DNA recombination protein [Escherichia coli TW10509]
 gi|324111327|gb|EGC05309.1| recA DNA recombination protein [Escherichia fergusonii B253]
 gi|324119948|gb|EGC13826.1| recA DNA recombination protein [Escherichia coli E1167]
 gi|326339232|gb|EGD63047.1| RecA protein [Escherichia coli O157:H7 str. 1044]
 gi|326342884|gb|EGD66652.1| RecA protein [Escherichia coli O157:H7 str. 1125]
 gi|327251417|gb|EGE63103.1| protein RecA [Escherichia coli STEC_7v]
 gi|330908730|gb|EGH37244.1| RecA protein [Escherichia coli AA86]
 gi|331053386|gb|EGI25415.1| protein RecA [Escherichia coli TA206]
 gi|331058181|gb|EGI30162.1| protein RecA [Escherichia coli TA143]
 gi|331063099|gb|EGI35012.1| protein RecA [Escherichia coli TA271]
 gi|331077926|gb|EGI49132.1| protein RecA [Escherichia coli H299]
 gi|332087417|gb|EGI92545.1| protein RecA [Shigella boydii 5216-82]
 gi|332088716|gb|EGI93829.1| protein RecA [Shigella dysenteriae 155-74]
 gi|332091903|gb|EGI96981.1| protein RecA [Shigella boydii 3594-74]
          Length = 353

 Score =  458 bits (1179), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/352 (62%), Positives = 285/352 (80%), Gaps = 11/352 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
            N+  +L++N E A+ IE  +R+        LL  P  N+  D   DD++ V
Sbjct: 304 ANATAWLKDNPETAKEIEKKVRE-------LLLSNP--NSTPDFSVDDSEGV 346


>gi|330807842|ref|YP_004352304.1| recombinase A [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327375950|gb|AEA67300.1| recombinase A [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 350

 Score =  458 bits (1179), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 224/352 (63%), Positives = 280/352 (79%), Gaps = 10/352 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI+R +GKGA+M++G Q    + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKKALAAALGQIERQFGKGAVMRMGDQDR--QAIPSISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAQAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+ASPF+Q EF I+YG+GI   GE+IDLGV    V+KSGAW+++ G ++GQG+
Sbjct: 242 RVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGTKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
            NS  FL +N E+A  +E  LR       D LL  P  + K  A+++  D++
Sbjct: 302 ANSAKFLADNPEVAAALEKQLR-------DKLLS-PVADVKSVANRETADDL 345


>gi|320173449|gb|EFW48648.1| RecA protein [Shigella dysenteriae CDC 74-1112]
          Length = 353

 Score =  458 bits (1179), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/352 (62%), Positives = 285/352 (80%), Gaps = 11/352 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARIMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
            N+  +L++N E A+ IE  +R+        LL  P  N+  D   DD++ V
Sbjct: 304 ANATAWLKDNPETAKEIEKKVRE-------LLLSNP--NSTPDFSVDDSEGV 346


>gi|224551701|gb|ACN54250.1| RecA [Burkholderia cenocepacia]
          Length = 313

 Score =  458 bits (1179), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 216/310 (69%), Positives = 269/310 (86%), Gaps = 1/310 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +G+G+IM++G  G   + I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 2   FGEGSIMRMGD-GEAADNIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 60

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 61  VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 120

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 121 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 180

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 181 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 240

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLG +A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 241 IFDILYGEGISRQGEIIDLGAQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 300

Query: 327 IESLLRQNAG 336
           IE+ +R++ G
Sbjct: 301 IENRIRESLG 310


>gi|197124458|ref|YP_002136409.1| recA protein [Anaeromyxobacter sp. K]
 gi|196174307|gb|ACG75280.1| recA protein [Anaeromyxobacter sp. K]
          Length = 358

 Score =  458 bits (1179), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 215/327 (65%), Positives = 279/327 (85%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KA+E A++ I++ +GKG+IM+LG++ ++ + ++ VS+G++ LDIALG+GGFP+GRI+
Sbjct: 6   EKEKAIELAVASIEKAFGKGSIMRLGNEDALVKDVQAVSTGAVSLDIALGVGGFPRGRII 65

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH IA++Q+ GG  AFVDAEHALD  YARKLGV   +LLISQPD+G
Sbjct: 66  EIYGPESSGKTTLALHAIAEAQRRGGIAAFVDAEHALDVGYARKLGVRTDDLLISQPDSG 125

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+D++V+DSVAAL P+AE+EG+MG++  G+QARLMSQALRKLT +I
Sbjct: 126 EQALEIVETLVRSGAIDVLVVDSVAALVPKAELEGEMGDAHMGVQARLMSQALRKLTGTI 185

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S  I++FINQ+RMKIGVMFG+PETTTGGNALKFY+S RLDIRR+G+IKD DS+ GN+T
Sbjct: 186 SKSATIVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIGAIKDGDSVIGNRT 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK+VEFDIMYG+GIS  G+++DL    +IV+KSG WFSF G+R+GQGR
Sbjct: 246 RVKVVKNKVAPPFKEVEFDIMYGQGISREGDVLDLASNENIVEKSGTWFSFGGERIGQGR 305

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           E +K F RE+ EI + IES L +  G+
Sbjct: 306 EQAKAFFREHPEILQQIESRLFEKFGI 332


>gi|297516505|ref|ZP_06934891.1| recombinase A [Escherichia coli OP50]
          Length = 353

 Score =  458 bits (1179), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/352 (62%), Positives = 285/352 (80%), Gaps = 11/352 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSRMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
            N+  +L++N E A+ IE  +R+        LL  P  N+  D   DD++ V
Sbjct: 304 ANATAWLKDNPETAKEIEKKVRE-------LLLSNP--NSTPDFSVDDSEGV 346


>gi|299769713|ref|YP_003731739.1| recombinase A [Acinetobacter sp. DR1]
 gi|298699801|gb|ADI90366.1| recombinase A [Acinetobacter sp. DR1]
          Length = 348

 Score =  458 bits (1179), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 216/323 (66%), Positives = 268/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL+AALSQI++ +GK  +M+LG   +  + +E VS+GSL LDIALGIGG PKGRIV
Sbjct: 4   NKSKALQAALSQIEKQFGKNTVMRLGD--NTVQAVEAVSTGSLTLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ L  IAQ QKTGGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD G
Sbjct: 62  EIYGPESSGKTTMTLQAIAQCQKTGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T + 
Sbjct: 122 EQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNA 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G +K+ D I G++T
Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PF++  F I+YG+G +  GEL+DL V+  IV K+GAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKMAPPFREAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N      EN ++A  IE  +R+
Sbjct: 302 NNVIRHFEENPQMAGEIERNIRE 324


>gi|138754323|emb|CAL59728.1| recombinase A [Cloning vector pSC101BADgbaA-ISceI(amp)]
          Length = 364

 Score =  458 bits (1179), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/352 (62%), Positives = 285/352 (80%), Gaps = 11/352 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 17  NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 74

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 75  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 134

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 135 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 194

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 195 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 254

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 255 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 314

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
            N+  +L++N E A+ IE  +R+        LL  P  N+  D   DD++ V
Sbjct: 315 ANATAWLKDNPETAKEIEKKVRE-------LLLSNP--NSTPDFSVDDSEGV 357


>gi|55670286|pdb|1U94|A Chain A, Crystal Structure Of E. Coli Reca In A Compressed Helical
           Filament Form 2
 gi|55670292|pdb|1U98|A Chain A, "crystal Structure Of E. Coli Reca In A Compressed Helical
           Filament Form3"
 gi|55670293|pdb|1U99|A Chain A, "crystal Structures Of E. Coli Reca In A Compressed
           Helical Filament Form 4"
 gi|58177451|pdb|1XMS|A Chain A, "e. Coli Reca In Complex With Mnamp-Pnp"
 gi|58177454|pdb|1XMV|A Chain A, "e. Coli Reca In Complex With Mgadp"
          Length = 356

 Score =  458 bits (1178), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/352 (62%), Positives = 285/352 (80%), Gaps = 11/352 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 9   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 66

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 67  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 126

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 127 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 186

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 187 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 246

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 247 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 306

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
            N+  +L++N E A+ IE  +R+        LL  P  N+  D   DD++ V
Sbjct: 307 ANATAWLKDNPETAKEIEKKVRE-------LLLSNP--NSTPDFSVDDSEGV 349


>gi|121635134|ref|YP_975379.1| recombinase A [Neisseria meningitidis FAM18]
 gi|166220659|sp|A1KUQ0|RECA_NEIMF RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|93117291|gb|ABE99563.1| RecA [Neisseria meningitidis H44/76]
 gi|93117293|gb|ABE99564.1| RecA [Neisseria meningitidis]
 gi|93117299|gb|ABE99567.1| RecA [Neisseria meningitidis]
 gi|93117301|gb|ABE99568.1| RecA [Neisseria meningitidis]
 gi|120866840|emb|CAM10598.1| RecA protein [Neisseria meningitidis FAM18]
 gi|316984575|gb|EFV63540.1| protein RecA [Neisseria meningitidis H44/76]
 gi|325128496|gb|EGC51374.1| protein RecA [Neisseria meningitidis N1568]
 gi|325132190|gb|EGC54886.1| protein RecA [Neisseria meningitidis M6190]
 gi|325138123|gb|EGC60696.1| protein RecA [Neisseria meningitidis ES14902]
 gi|325140610|gb|EGC63130.1| protein RecA [Neisseria meningitidis CU385]
 gi|325198580|gb|ADY94036.1| protein RecA [Neisseria meningitidis G2136]
 gi|325199939|gb|ADY95394.1| protein RecA [Neisseria meningitidis H44/76]
          Length = 348

 Score =  458 bits (1178), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 222/328 (67%), Positives = 278/328 (84%), Gaps = 3/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           DKSKAL AAL+QI++ +GKGAIM++ GSQ    E +EV+S+GSLGLD+ALG+GG P+GRI
Sbjct: 4   DKSKALAAALAQIEKSFGKGAIMKMDGSQQE--ENLEVISTGSLGLDLALGVGGLPRGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEI+GPESSGKTTL L  +AQ QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDT
Sbjct: 62  VEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSG +D++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  
Sbjct: 122 GEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGH 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR GSIK  + + GN+
Sbjct: 182 IKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNE 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+GVK  I++KSGAW+S+ G ++GQG
Sbjct: 242 TRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           ++N +++L+EN EIA+ I++ +R   G+
Sbjct: 302 KDNVRVWLKENPEIADEIDAKIRALNGI 329


>gi|296837451|gb|ADH59584.1| DNA recombinase [Burkholderia vietnamiensis]
          Length = 307

 Score =  458 bits (1178), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/308 (70%), Positives = 269/308 (87%), Gaps = 1/308 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+
Sbjct: 1   SIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IV
Sbjct: 60  LQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM
Sbjct: 120 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 179

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI
Sbjct: 180 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 239

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
           +YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ 
Sbjct: 240 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 299

Query: 331 LRQNAGLV 338
           +R++ G+V
Sbjct: 300 IRESLGVV 307


>gi|296803048|gb|ADH51600.1| DNA recombinase [Burkholderia contaminans]
          Length = 305

 Score =  458 bits (1178), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/303 (71%), Positives = 265/303 (87%), Gaps = 1/303 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 2   FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 60

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 61  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 120

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 121 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 180

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 181 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 240

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 241 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 300

Query: 327 IES 329
           IE+
Sbjct: 301 IEN 303


>gi|296803018|gb|ADH51585.1| DNA recombinase [Burkholderia cenocepacia]
          Length = 307

 Score =  458 bits (1178), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/308 (70%), Positives = 268/308 (87%), Gaps = 1/308 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+
Sbjct: 1   SIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IV
Sbjct: 60  LQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM
Sbjct: 120 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 179

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI
Sbjct: 180 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 239

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
           +YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ 
Sbjct: 240 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 299

Query: 331 LRQNAGLV 338
           +R++ G+V
Sbjct: 300 IRESLGVV 307


>gi|224369826|ref|YP_002603990.1| RecA [Desulfobacterium autotrophicum HRM2]
 gi|259563332|sp|C0QI90|RECA_DESAH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|223692543|gb|ACN15826.1| RecA [Desulfobacterium autotrophicum HRM2]
          Length = 347

 Score =  458 bits (1178), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 211/329 (64%), Positives = 278/329 (84%), Gaps = 2/329 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + +K KA++ A+ QI+R +GKG+IM+LG++    + + ++S+GSL LD ALG+GGFP+GR
Sbjct: 4   LTEKDKAIQTAMGQIERQFGKGSIMKLGARE--IQAVPIISTGSLALDKALGVGGFPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EIYGPESSGKTTLALH +A++Q+ GG  AF+DAEHALD  YAR+LGV+   LL+SQPD
Sbjct: 62  VIEIYGPESSGKTTLALHAVAEAQRQGGIAAFIDAEHALDVAYARRLGVNCDELLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DMLVRSGAVDII++DSVAAL PRAEIEGDMG+S  G+QARLMSQALRKLT+
Sbjct: 122 TGEQALEIVDMLVRSGAVDIIIVDSVAALVPRAEIEGDMGDSHMGLQARLMSQALRKLTA 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I ++   L+FINQ+RMKIGV++G+PETTTGGNALKFY+SVR++IR+  +IKD ++I GN
Sbjct: 182 TIGKTHTTLIFINQIRMKIGVVYGNPETTTGGNALKFYASVRIEIRKATAIKDGENILGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T+VKVVKNK+A PFK +EFD+MYGEGIS  GEL+D+GV   IVDKSGAW+S+ G+R+GQ
Sbjct: 242 RTKVKVVKNKLAPPFKSIEFDLMYGEGISKTGELLDMGVDMGIVDKSGAWYSYDGERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGL 337
           GR+N+K+F  +N EI   I++ +R+  GL
Sbjct: 302 GRQNAKVFFTDNPEIFNQIQARVREALGL 330


>gi|170664150|gb|ACB28494.1| RecA [Burkholderia cepacia]
          Length = 310

 Score =  458 bits (1178), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/311 (69%), Positives = 270/311 (86%), Gaps = 1/311 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++   LISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPEPLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGL 337
           IE+ +R++ G+
Sbjct: 300 IENRIRESLGV 310


>gi|149924950|ref|ZP_01913278.1| recombinase A [Plesiocystis pacifica SIR-1]
 gi|149814175|gb|EDM73790.1| recombinase A [Plesiocystis pacifica SIR-1]
          Length = 378

 Score =  458 bits (1178), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 220/327 (67%), Positives = 274/327 (83%), Gaps = 1/327 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSI-FEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +S A++ AL+ I++ +GKG+IM+L + G +  + + VV +G LGLDIALGIGG P+GRIV
Sbjct: 14  RSAAIDLALATIEKQFGKGSIMRLSADGKLPSQDVPVVPTGCLGLDIALGIGGLPRGRIV 73

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH +A++Q+ GG CAF+DAEHALD  YARK+GV  ++LLISQPD G
Sbjct: 74  EIYGPESSGKTTLTLHAVAEAQRQGGVCAFIDAEHALDVGYARKIGVKTEDLLISQPDYG 133

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IV+DSVAALTP+AE+EG+MG+S  G+QARLMSQALRKLT S+
Sbjct: 134 EQALEICDMLVRSGAIDVIVVDSVAALTPKAELEGEMGDSHVGLQARLMSQALRKLTGSV 193

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SR + +++FINQ+R KIGVMFGSPETTTGGNALKFYSSVRLDIRR+G IK  D +TGN+T
Sbjct: 194 SRGRTLVIFINQLRSKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGKIKQGDQVTGNRT 253

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PF++VEFDI +GEG+S  G LIDLGV+A ++DK+GAW S+KG R+GQGR
Sbjct: 254 RVKVVKNKMAPPFREVEFDINFGEGVSKEGMLIDLGVEAKVLDKAGAWLSYKGDRIGQGR 313

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           E +K FLREN +I   IE+ +    GL
Sbjct: 314 ERAKDFLRENKDIFGAIEAEVLSKHGL 340


>gi|70904913|gb|AAZ14034.1| RecA [Burkholderia ambifaria]
          Length = 300

 Score =  458 bits (1178), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 216/301 (71%), Positives = 264/301 (87%), Gaps = 1/301 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           +A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  VAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI
Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  
Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  I
Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299

Query: 328 E 328
           E
Sbjct: 300 E 300


>gi|296837423|gb|ADH59570.1| DNA recombinase [Burkholderia lata]
          Length = 305

 Score =  458 bits (1178), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/306 (70%), Positives = 267/306 (87%), Gaps = 1/306 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+
Sbjct: 60  AELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG
Sbjct: 120 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  F
Sbjct: 180 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 239

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           DI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE
Sbjct: 240 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 299

Query: 329 SLLRQN 334
           + +R++
Sbjct: 300 NRIRES 305


>gi|116734148|gb|ABK20136.1| RecA [Shigella boydii]
          Length = 348

 Score =  458 bits (1178), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/352 (62%), Positives = 285/352 (80%), Gaps = 11/352 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 1   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 58

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 59  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 118

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 119 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 178

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 179 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 238

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 239 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 298

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
            N+  +L++N E A+ IE  +R+        LL  P  N+  D   DD++ V
Sbjct: 299 ANATAWLKDNPETAKEIEKKVRE-------LLLSNP--NSTPDFSVDDSEGV 341


>gi|117624930|ref|YP_853918.1| recombinase A [Escherichia coli APEC O1]
 gi|227888235|ref|ZP_04006040.1| recombination protein A [Escherichia coli 83972]
 gi|237706681|ref|ZP_04537162.1| recombinase A [Escherichia sp. 3_2_53FAA]
 gi|254037738|ref|ZP_04871796.1| recombinase A [Escherichia sp. 1_1_43]
 gi|293412054|ref|ZP_06654777.1| RecA protein [Escherichia coli B354]
 gi|293415948|ref|ZP_06658588.1| RecA protein [Escherichia coli B185]
 gi|293449012|ref|ZP_06663433.1| RecA protein [Escherichia coli B088]
 gi|300815898|ref|ZP_07096122.1| protein RecA [Escherichia coli MS 107-1]
 gi|300820473|ref|ZP_07100624.1| protein RecA [Escherichia coli MS 119-7]
 gi|300899934|ref|ZP_07118140.1| protein RecA [Escherichia coli MS 198-1]
 gi|300906804|ref|ZP_07124485.1| protein RecA [Escherichia coli MS 84-1]
 gi|300919275|ref|ZP_07135793.1| protein RecA [Escherichia coli MS 115-1]
 gi|300924254|ref|ZP_07140239.1| protein RecA [Escherichia coli MS 182-1]
 gi|300930552|ref|ZP_07145947.1| protein RecA [Escherichia coli MS 187-1]
 gi|300941068|ref|ZP_07155584.1| protein RecA [Escherichia coli MS 21-1]
 gi|300947028|ref|ZP_07161251.1| protein RecA [Escherichia coli MS 116-1]
 gi|300954933|ref|ZP_07167349.1| protein RecA [Escherichia coli MS 175-1]
 gi|300975104|ref|ZP_07172871.1| protein RecA [Escherichia coli MS 200-1]
 gi|300976923|ref|ZP_07173675.1| protein RecA [Escherichia coli MS 45-1]
 gi|301027054|ref|ZP_07190431.1| protein RecA [Escherichia coli MS 69-1]
 gi|301049552|ref|ZP_07196507.1| protein RecA [Escherichia coli MS 185-1]
 gi|301305416|ref|ZP_07211510.1| protein RecA [Escherichia coli MS 124-1]
 gi|301326276|ref|ZP_07219652.1| protein RecA [Escherichia coli MS 78-1]
 gi|301645325|ref|ZP_07245273.1| protein RecA [Escherichia coli MS 146-1]
 gi|309795158|ref|ZP_07689577.1| protein RecA [Escherichia coli MS 145-7]
 gi|331643382|ref|ZP_08344513.1| protein RecA [Escherichia coli H736]
 gi|331648416|ref|ZP_08349504.1| protein RecA [Escherichia coli M605]
 gi|331654176|ref|ZP_08355176.1| protein RecA [Escherichia coli M718]
 gi|331674210|ref|ZP_08374970.1| protein RecA [Escherichia coli TA280]
 gi|331678671|ref|ZP_08379345.1| protein RecA [Escherichia coli H591]
 gi|115514054|gb|ABJ02129.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia coli APEC O1]
 gi|226839362|gb|EEH71383.1| recombinase A [Escherichia sp. 1_1_43]
 gi|226899721|gb|EEH85980.1| recombinase A [Escherichia sp. 3_2_53FAA]
 gi|227834504|gb|EEJ44970.1| recombination protein A [Escherichia coli 83972]
 gi|291322102|gb|EFE61531.1| RecA protein [Escherichia coli B088]
 gi|291432137|gb|EFF05119.1| RecA protein [Escherichia coli B185]
 gi|291468825|gb|EFF11316.1| RecA protein [Escherichia coli B354]
 gi|300298677|gb|EFJ55062.1| protein RecA [Escherichia coli MS 185-1]
 gi|300308785|gb|EFJ63305.1| protein RecA [Escherichia coli MS 200-1]
 gi|300318122|gb|EFJ67906.1| protein RecA [Escherichia coli MS 175-1]
 gi|300356521|gb|EFJ72391.1| protein RecA [Escherichia coli MS 198-1]
 gi|300395219|gb|EFJ78757.1| protein RecA [Escherichia coli MS 69-1]
 gi|300401405|gb|EFJ84943.1| protein RecA [Escherichia coli MS 84-1]
 gi|300409937|gb|EFJ93475.1| protein RecA [Escherichia coli MS 45-1]
 gi|300413646|gb|EFJ96956.1| protein RecA [Escherichia coli MS 115-1]
 gi|300419530|gb|EFK02841.1| protein RecA [Escherichia coli MS 182-1]
 gi|300453342|gb|EFK16962.1| protein RecA [Escherichia coli MS 116-1]
 gi|300454195|gb|EFK17688.1| protein RecA [Escherichia coli MS 21-1]
 gi|300461573|gb|EFK25066.1| protein RecA [Escherichia coli MS 187-1]
 gi|300526737|gb|EFK47806.1| protein RecA [Escherichia coli MS 119-7]
 gi|300531827|gb|EFK52889.1| protein RecA [Escherichia coli MS 107-1]
 gi|300839336|gb|EFK67096.1| protein RecA [Escherichia coli MS 124-1]
 gi|300847016|gb|EFK74776.1| protein RecA [Escherichia coli MS 78-1]
 gi|301076395|gb|EFK91201.1| protein RecA [Escherichia coli MS 146-1]
 gi|308121129|gb|EFO58391.1| protein RecA [Escherichia coli MS 145-7]
 gi|315254475|gb|EFU34443.1| protein RecA [Escherichia coli MS 85-1]
 gi|315289213|gb|EFU48611.1| protein RecA [Escherichia coli MS 110-3]
 gi|315293658|gb|EFU53010.1| protein RecA [Escherichia coli MS 153-1]
 gi|315298715|gb|EFU57969.1| protein RecA [Escherichia coli MS 16-3]
 gi|324013705|gb|EGB82924.1| protein RecA [Escherichia coli MS 60-1]
 gi|324017051|gb|EGB86270.1| protein RecA [Escherichia coli MS 117-3]
 gi|325496255|gb|EGC94114.1| recombinase A [Escherichia fergusonii ECD227]
 gi|331036853|gb|EGI09077.1| protein RecA [Escherichia coli H736]
 gi|331042163|gb|EGI14305.1| protein RecA [Escherichia coli M605]
 gi|331047558|gb|EGI19635.1| protein RecA [Escherichia coli M718]
 gi|331068304|gb|EGI39699.1| protein RecA [Escherichia coli TA280]
 gi|331073501|gb|EGI44822.1| protein RecA [Escherichia coli H591]
 gi|332102999|gb|EGJ06345.1| recombinase A [Shigella sp. D9]
          Length = 358

 Score =  458 bits (1178), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/352 (62%), Positives = 285/352 (80%), Gaps = 11/352 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 11  NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 68

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 69  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 128

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 129 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 188

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 189 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 248

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 249 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 308

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
            N+  +L++N E A+ IE  +R+        LL  P  N+  D   DD++ V
Sbjct: 309 ANATAWLKDNPETAKEIEKKVRE-------LLLSNP--NSTPDFSVDDSEGV 351


>gi|229597118|ref|YP_001599484.2| recombinase A [Neisseria meningitidis 053442]
 gi|254672334|emb|CBA05502.1| RecA protein [Neisseria meningitidis alpha275]
          Length = 348

 Score =  458 bits (1178), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 222/328 (67%), Positives = 278/328 (84%), Gaps = 3/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           DKSKAL AAL+QI++ +GKGAIM++ GSQ    E +EV+S+GSLGLD+ALG+GG P+GRI
Sbjct: 4   DKSKALAAALAQIEKSFGKGAIMKMDGSQQE--ENLEVISTGSLGLDLALGVGGLPRGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEI+GPESSGKTTL L  +AQ QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDT
Sbjct: 62  VEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSG +D++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  
Sbjct: 122 GEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGH 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR GSIK  + + GN+
Sbjct: 182 IKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNE 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+GVK  I++KSGAW+S+ G ++GQG
Sbjct: 242 TRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           ++N +++L+EN EIA+ I++ +R   G+
Sbjct: 302 KDNVRVWLKENPEIADEIDAKIRALNGV 329


>gi|296837351|gb|ADH59534.1| DNA recombinase [Burkholderia contaminans]
          Length = 307

 Score =  458 bits (1178), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/308 (70%), Positives = 268/308 (87%), Gaps = 1/308 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQNAGL 337
            +R++ G+
Sbjct: 300 RIRESLGV 307


>gi|87244455|gb|ABD34619.1| RecA [Anaplasma centrale]
          Length = 357

 Score =  458 bits (1178), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 214/322 (66%), Positives = 273/322 (84%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+AA+SQI+R +G+GAIM+L    +  E ++ VS+GS+ LD ALGIGG PKGRIV
Sbjct: 11  DKQKALDAAISQIERAFGRGAIMKLKQHPA--EKMDSVSTGSIALDAALGIGGLPKGRIV 68

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTLALH IA++QK GG CAF+DAEHALD++YARKLGV + +L++SQPDTG
Sbjct: 69  EIFGPESSGKTTLALHVIAEAQKQGGNCAFIDAEHALDTVYARKLGVSVGDLIVSQPDTG 128

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL I + LV SGA+D+IV+DSVAALTPRAEIEGDMG+   G+QARL+S ALRKLTS +
Sbjct: 129 EQALHIVEYLVCSGAIDVIVVDSVAALTPRAEIEGDMGDQHMGLQARLLSHALRKLTSVV 188

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++ CILVFINQ+R+KIGVM+G+PE TTGG+ALKFY+S+RLDIR+V +IKDKDS+ GNQT
Sbjct: 189 SKANCILVFINQIRIKIGVMYGNPEVTTGGSALKFYTSIRLDIRKVSAIKDKDSVIGNQT 248

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDI+Y EGIS  GE++D+GVK   V+KSGA++S+   +LGQGR
Sbjct: 249 RVKVVKNKVAPPFKQAEFDIVYNEGISKLGEIVDMGVKFGFVEKSGAYYSYGAVKLGQGR 308

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           EN+K +L+ + ++A  +E  +R
Sbjct: 309 ENAKAYLKSSPDVANELEQKIR 330


>gi|28948687|pdb|1N03|A Chain A, Model For Active Reca Filament
 gi|28948688|pdb|1N03|B Chain B, Model For Active Reca Filament
 gi|28948689|pdb|1N03|C Chain C, Model For Active Reca Filament
 gi|28948690|pdb|1N03|D Chain D, Model For Active Reca Filament
 gi|28948691|pdb|1N03|E Chain E, Model For Active Reca Filament
 gi|28948692|pdb|1N03|F Chain F, Model For Active Reca Filament
 gi|28948693|pdb|1N03|G Chain G, Model For Active Reca Filament
 gi|157833666|pdb|1REA|A Chain A, Structure Of The Reca Protein-Adp Complex
 gi|157836330|pdb|2REB|A Chain A, The Structure Of The E. Coli Reca Protein Monomer And
           Polymer
 gi|227588|prf||1707271A recA gene
 gi|227589|prf||1707271B recA gene
          Length = 352

 Score =  458 bits (1178), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/352 (62%), Positives = 285/352 (80%), Gaps = 11/352 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 5   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 123 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 183 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 243 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
            N+  +L++N E A+ IE  +R+        LL  P  N+  D   DD++ V
Sbjct: 303 ANATAWLKDNPETAKEIEKKVRE-------LLLSNP--NSTPDFSVDDSEGV 345


>gi|149394984|gb|ABR27346.1| RecA [Burkholderia cenocepacia]
          Length = 307

 Score =  458 bits (1178), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/308 (70%), Positives = 268/308 (87%), Gaps = 1/308 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           +G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  I
Sbjct: 1   QGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+
Sbjct: 60  AELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG
Sbjct: 120 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  F
Sbjct: 180 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 239

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           DI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE
Sbjct: 240 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 299

Query: 329 SLLRQNAG 336
           + +R++ G
Sbjct: 300 NRIRESLG 307


>gi|86160380|ref|YP_467165.1| RecA protein [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776891|gb|ABC83728.1| RecA protein [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 358

 Score =  457 bits (1177), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/350 (62%), Positives = 284/350 (81%), Gaps = 6/350 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KA+E A++ I++ +GKG+IM+LG++ ++ + ++ VS+G++ LDIALG+GGFP+GRI+
Sbjct: 6   EKEKAIELAVASIEKAFGKGSIMRLGNEDALVKDVQAVSTGAISLDIALGVGGFPRGRII 65

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH IA++Q+ GG  AFVDAEHALD  YARKLGV   +LLISQPD+G
Sbjct: 66  EIYGPESSGKTTLALHAIAEAQRRGGIAAFVDAEHALDVGYARKLGVRTDDLLISQPDSG 125

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+D++V+DSVAAL P+AE+EG+MG++  G+QARLMSQALRKLT +I
Sbjct: 126 EQALEIVETLVRSGAIDVLVVDSVAALVPKAELEGEMGDAHMGVQARLMSQALRKLTGTI 185

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S  I++FINQ+RMKIGVMFG+PETTTGGNALKFY+S RLDIRR+G+IKD DS+ GN+T
Sbjct: 186 SKSSTIVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIGAIKDGDSVIGNRT 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK+VEFDIMYG GIS  G+++DL     IV+KSG WFSF G+R+GQGR
Sbjct: 246 RVKVVKNKVAPPFKEVEFDIMYGHGISREGDVLDLASNEGIVEKSGTWFSFGGERIGQGR 305

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL------VADSLLQEPAINTKDDA 354
           E +K F RE+ EI + +E+ L +  G+      V     +EPA   K  A
Sbjct: 306 EQTKAFFREHPEILQQVEARLFEKFGIHRGPVAVPSPPAEEPAEERKPRA 355


>gi|296802988|gb|ADH51570.1| DNA recombinase [Burkholderia contaminans]
 gi|296837355|gb|ADH59536.1| DNA recombinase [Burkholderia contaminans]
          Length = 307

 Score =  457 bits (1177), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/308 (70%), Positives = 268/308 (87%), Gaps = 1/308 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQNAGL 337
            +R++ G+
Sbjct: 300 RIRESLGV 307


>gi|254670267|emb|CBA05536.1| RecA protein [Neisseria meningitidis alpha153]
 gi|261392293|emb|CAX49819.1| RecA protein (recombinase A) [Neisseria meningitidis 8013]
 gi|308389550|gb|ADO31870.1| RecA protein [Neisseria meningitidis alpha710]
 gi|325136511|gb|EGC59115.1| protein RecA [Neisseria meningitidis M0579]
 gi|325204432|gb|ADY99885.1| protein RecA [Neisseria meningitidis M01-240355]
          Length = 348

 Score =  457 bits (1177), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 222/328 (67%), Positives = 278/328 (84%), Gaps = 3/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           DKSKAL AAL+QI++ +GKGAIM++ GSQ    E +EV+S+GSLGLD+ALG+GG P+GRI
Sbjct: 4   DKSKALAAALAQIEKSFGKGAIMKMDGSQQE--ENLEVISTGSLGLDLALGVGGLPRGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEI+GPESSGKTTL L  +AQ QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDT
Sbjct: 62  VEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSG +D++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  
Sbjct: 122 GEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGH 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR GSIK  + + GN+
Sbjct: 182 IKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNE 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+GVK  I++KSGAW+S+ G ++GQG
Sbjct: 242 TRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           ++N +++L+EN EIA+ I++ +R   G+
Sbjct: 302 KDNVRVWLKENPEIADEIDAKIRALNGV 329


>gi|157326965|gb|ABV44595.1| RecA [Burkholderia multivorans]
          Length = 308

 Score =  457 bits (1177), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/309 (70%), Positives = 269/309 (87%), Gaps = 1/309 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GK +IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKRSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRSGSID 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI
Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  
Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  I
Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299

Query: 328 ESLLRQNAG 336
           E+ +R++ G
Sbjct: 300 ENRIRESLG 308


>gi|296837361|gb|ADH59539.1| DNA recombinase [Burkholderia cenocepacia]
          Length = 307

 Score =  457 bits (1177), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/307 (70%), Positives = 267/307 (86%), Gaps = 1/307 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQNAG 336
            +R++ G
Sbjct: 300 RIRESLG 306


>gi|296803100|gb|ADH51626.1| DNA recombinase [Burkholderia multivorans]
          Length = 308

 Score =  457 bits (1177), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/308 (70%), Positives = 269/308 (87%), Gaps = 1/308 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQNAGL 337
            +R++ G+
Sbjct: 300 RIRESLGV 307


>gi|269959163|ref|YP_003328952.1| recombinase A [Anaplasma centrale str. Israel]
 gi|269848994|gb|ACZ49638.1| recombinase A [Anaplasma centrale str. Israel]
          Length = 358

 Score =  457 bits (1177), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 214/322 (66%), Positives = 273/322 (84%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+AA+SQI+R +G+GAIM+L    +  E ++ VS+GS+ LD ALGIGG PKGRIV
Sbjct: 12  DKQKALDAAISQIERAFGRGAIMKLKQHPA--EKMDSVSTGSIALDAALGIGGLPKGRIV 69

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTLALH IA++QK GG CAF+DAEHALD++YARKLGV + +L++SQPDTG
Sbjct: 70  EIFGPESSGKTTLALHVIAEAQKQGGNCAFIDAEHALDTVYARKLGVSVGDLIVSQPDTG 129

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL I + LV SGA+D+IV+DSVAALTPRAEIEGDMG+   G+QARL+S ALRKLTS +
Sbjct: 130 EQALHIVEYLVCSGAIDVIVVDSVAALTPRAEIEGDMGDQHMGLQARLLSHALRKLTSVV 189

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++ CILVFINQ+R+KIGVM+G+PE TTGG+ALKFY+S+RLDIR+V +IKDKDS+ GNQT
Sbjct: 190 SKANCILVFINQIRIKIGVMYGNPEVTTGGSALKFYTSIRLDIRKVSAIKDKDSVIGNQT 249

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDI+Y EGIS  GE++D+GVK   V+KSGA++S+   +LGQGR
Sbjct: 250 RVKVVKNKVAPPFKQAEFDIVYNEGISKLGEIVDMGVKFGFVEKSGAYYSYGAVKLGQGR 309

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           EN+K +L+ + ++A  +E  +R
Sbjct: 310 ENAKAYLKSSPDVANELEQKIR 331


>gi|90408944|ref|ZP_01217078.1| putative RecA protein [Psychromonas sp. CNPT3]
 gi|90309945|gb|EAS38096.1| putative RecA protein [Psychromonas sp. CNPT3]
          Length = 351

 Score =  457 bits (1177), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/346 (65%), Positives = 282/346 (81%), Gaps = 9/346 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++ + IE VS+GSLGLDIALGIGG P GR+V
Sbjct: 6   NKDKALAAALGQIEKQFGKGSIMRLGDGNAMMD-IEAVSTGSLGLDIALGIGGLPCGRVV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAF+DAEHALD IYA+KLGV++  LLISQPDTG
Sbjct: 65  EIYGPESSGKTTLTLQVIAEAQKKGKTCAFIDAEHALDPIYAKKLGVNIDELLISQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGAV ++VIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT SI
Sbjct: 125 EQALEICDMLIRSGAVGVVVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTGSI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D I GN+T
Sbjct: 185 KQTNTMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKNGDEIVGNET 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EF I+YG GI+ FGELIDLGVK  +V+K+G+W+S++G ++GQG+
Sbjct: 245 RVKVVKNKVSPPFKQAEFQILYGHGINRFGELIDLGVKNDLVEKAGSWYSYQGVKIGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
            N+     EN ++A  +E  LR       D LL +P  + K  ADK
Sbjct: 305 SNACKHFLENPKLAAELELKLR-------DILLPKPEEDEK-AADK 342


>gi|15836728|ref|NP_297416.1| recombinase A [Xylella fastidiosa 9a5c]
 gi|11387033|sp|Q9PH23|RECA_XYLFA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|9104907|gb|AAF82936.1|AE003866_1 recombination protein RecA [Xylella fastidiosa 9a5c]
          Length = 347

 Score =  457 bits (1177), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 221/354 (62%), Positives = 287/354 (81%), Gaps = 13/354 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL  ALSQI++ +GKG++M++G +  + E +E + +GSL LD+ALGIGG PKGR+V
Sbjct: 4   NKKRALSVALSQIEKQFGKGSVMRMGDR--VIEAVEAIPTGSLMLDLALGIGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAQCQKKGGTAAFIDAEHALDPIYAGKLGVNVDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG++DI+VIDSVAALTPRAEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSGSIDIMVIDSVAALTPRAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  +++FINQ+RMKIGVM    SPETTTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 182 KRSNTLVIFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELI++GV+A +V+K+GAW+S+ G+R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIEMGVEAKLVEKAGAWYSYGGERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           G++N++ +LREN  +A  +E+ LR+           EP   ++++ D+D  ++ 
Sbjct: 302 GKDNARGYLRENPHLAAKLEADLREKF---------EPTELSREEGDEDTLEDT 346


>gi|70904864|gb|AAZ14011.1| RecA [Burkholderia multivorans]
          Length = 309

 Score =  457 bits (1177), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/309 (70%), Positives = 269/309 (87%), Gaps = 1/309 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+
Sbjct: 1   SIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVRSG++D+IV
Sbjct: 60  LQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRSGSIDMIV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM
Sbjct: 120 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 179

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI
Sbjct: 180 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 239

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
           +YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ 
Sbjct: 240 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 299

Query: 331 LRQNAGLVA 339
           +R++ G+ A
Sbjct: 300 IRESLGVAA 308


>gi|218768448|ref|YP_002342960.1| recombinase A [Neisseria meningitidis Z2491]
 gi|9911105|sp|P56987|RECA_NEIMA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|93117295|gb|ABE99565.1| RecA [Neisseria meningitidis]
 gi|93117297|gb|ABE99566.1| RecA [Neisseria meningitidis]
 gi|93117303|gb|ABE99569.1| RecA [Neisseria meningitidis]
 gi|121052456|emb|CAM08792.1| RecA protein [Neisseria meningitidis Z2491]
 gi|319410693|emb|CBY91072.1| RecA protein (recombinase A) [Neisseria meningitidis WUE 2594]
          Length = 348

 Score =  457 bits (1177), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 221/328 (67%), Positives = 278/328 (84%), Gaps = 3/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           DKSKAL AAL+QI++ +GKGAIM++ GSQ    E +EV+S+GSLGLD+ALG+GG P+GRI
Sbjct: 4   DKSKALAAALAQIEKSFGKGAIMKMDGSQQE--ENLEVISTGSLGLDLALGVGGLPRGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEI+GPESSGKTTL L  +AQ QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDT
Sbjct: 62  VEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSG +D++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  
Sbjct: 122 GEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGH 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR GSIK  + + GN+
Sbjct: 182 IKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNE 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+GVK  I++KSGAW+S+ G ++GQG
Sbjct: 242 TRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           ++N +++L+EN E+A+ I++ +R   G+
Sbjct: 302 KDNVRVWLKENPEVADEIDAKIRALNGV 329


>gi|330984348|gb|EGH82451.1| recombinase A [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 468

 Score =  457 bits (1177), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 215/342 (62%), Positives = 279/342 (81%), Gaps = 4/342 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+   K  AL  AL+QI++ +GKGA+M++G Q  +   I  +S+GSL LDIALGIGG PK
Sbjct: 1   MSTDQKKAALATALTQIEKQFGKGAVMRMGDQERM--AIPAISTGSLNLDIALGIGGLPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD  YA KLGV++ +LL++Q
Sbjct: 59  GRIVEIYGPESSGKTTLTLSVIAEAQKNGATCAFVDAEHALDPEYAAKLGVNVDDLLVAQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEITDMLVRSG+VD++++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+
Sbjct: 119 PDTGEQALEITDMLVRSGSVDVLIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T +I  + C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR G++KD D+I 
Sbjct: 179 TGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGAVKDGDNIV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G++TRVKVVKNK+A PF+Q EF I+YGEGI  FGEL+DLGV   ++DKSGAW+++ G ++
Sbjct: 239 GSETRVKVVKNKVAPPFRQAEFQILYGEGIGKFGELVDLGVADGLIDKSGAWYAYGGNKI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348
           GQG+ N+  +L EN  +A+ +E+L+R     +A+ +++ P +
Sbjct: 299 GQGKANTIKYLAENPAVAQELEALIRNKH--LANRVIEPPRV 338


>gi|325916032|ref|ZP_08178322.1| RecA protein [Xanthomonas vesicatoria ATCC 35937]
 gi|325537708|gb|EGD09414.1| RecA protein [Xanthomonas vesicatoria ATCC 35937]
          Length = 344

 Score =  457 bits (1177), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/325 (67%), Positives = 276/325 (84%), Gaps = 4/325 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AALSQI++ +GKG++M++G +  + E +E++ +GSL LDIALGIGG PKGR+V
Sbjct: 4   NKKRALSAALSQIEKQFGKGSVMRMGDR--VIEAVEIIPTGSLMLDIALGIGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAQCQKLGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS +VDI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSSSVDIVVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  ++VFINQ+RMKIGVM    SPE TTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 182 KRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELID+GV+A +VDK+GAW+S+  +R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVDKAGAWYSYGDERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333
           G++N++ +LR+N ++A  +E+ LR+
Sbjct: 302 GKDNARGYLRDNPQVAAKLEAELRE 326


>gi|157326937|gb|ABV44581.1| RecA [Burkholderia multivorans]
          Length = 305

 Score =  457 bits (1177), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/306 (70%), Positives = 268/306 (87%), Gaps = 1/306 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVRSG++D+
Sbjct: 60  AELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRSGSIDM 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG
Sbjct: 120 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  F
Sbjct: 180 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 239

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           DI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE
Sbjct: 240 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 299

Query: 329 SLLRQN 334
           + +R++
Sbjct: 300 NRIRES 305


>gi|296803082|gb|ADH51617.1| DNA recombinase [Burkholderia contaminans]
          Length = 306

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/306 (70%), Positives = 267/306 (87%), Gaps = 1/306 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+
Sbjct: 60  AELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG
Sbjct: 120 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  F
Sbjct: 180 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 239

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           DI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE
Sbjct: 240 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 299

Query: 329 SLLRQN 334
           + +R++
Sbjct: 300 NRIRES 305


>gi|296802984|gb|ADH51568.1| DNA recombinase [Burkholderia multivorans]
          Length = 311

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/310 (70%), Positives = 269/310 (86%), Gaps = 1/310 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++ +L ISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLXISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQNAGLVA 339
            +R++ G+ A
Sbjct: 300 RIRESLGVAA 309


>gi|296803084|gb|ADH51618.1| DNA recombinase [Burkholderia cepacia]
          Length = 307

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/308 (70%), Positives = 268/308 (87%), Gaps = 1/308 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+
Sbjct: 60  AELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG
Sbjct: 120 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  F
Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 239

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           DI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE
Sbjct: 240 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 299

Query: 329 SLLRQNAG 336
           + +R++ G
Sbjct: 300 NRIRESLG 307


>gi|149395002|gb|ABR27355.1| RecA [Burkholderia sp. ESR90]
          Length = 310

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/306 (70%), Positives = 267/306 (87%), Gaps = 1/306 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           +G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  I
Sbjct: 4   QGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 62

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+
Sbjct: 63  AELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 122

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG
Sbjct: 123 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 182

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  F
Sbjct: 183 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 242

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           DI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE
Sbjct: 243 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 302

Query: 329 SLLRQN 334
           + +R++
Sbjct: 303 NRIRES 308


>gi|90412107|ref|ZP_01220114.1| recombinase A [Photobacterium profundum 3TCK]
 gi|90327085|gb|EAS43464.1| recombinase A [Photobacterium profundum 3TCK]
          Length = 353

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 222/345 (64%), Positives = 275/345 (79%), Gaps = 10/345 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L TIA +Q+   TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLETIAAAQRVNKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IVIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAVDLIVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +V+K+GAW+S+KG ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKQAETQILYGQGFNRNGELIDLGVKHKLVEKAGAWYSYKGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            NS   L EN  IAE IE LLR         +L  PA+   ++ D
Sbjct: 302 ANSCKHLVENPAIAEEIEKLLR--------DMLLSPAVEEVEETD 338


>gi|220919188|ref|YP_002494492.1| recA protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957042|gb|ACL67426.1| recA protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 358

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 214/327 (65%), Positives = 279/327 (85%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KA+E A++ I++ +GKG+IM+LG++ ++ + ++ VS+G++ LDIALG+GGFP+GRI+
Sbjct: 6   EKEKAIELAVASIEKAFGKGSIMRLGNEDALVKDVQAVSTGAVSLDIALGVGGFPRGRII 65

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH IA++Q+ GG  AFVDAEHALD  YARKLGV   +LLISQPD+G
Sbjct: 66  EIYGPESSGKTTLALHAIAEAQRRGGIAAFVDAEHALDVGYARKLGVRTDDLLISQPDSG 125

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+D++V+DSVAAL P+AE+EG+MG++  G+QARLMSQALRKLT +I
Sbjct: 126 EQALEIVETLVRSGAIDVLVVDSVAALVPKAELEGEMGDAHMGVQARLMSQALRKLTGTI 185

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++S  I++FINQ+RMKIGVMFG+PETTTGGNALKFY+S RLDIRR+G+IKD DS+ GN+T
Sbjct: 186 AKSATIVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIGAIKDGDSVIGNRT 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK+VEFDIMYG+GIS  G+++DL    +IV+KSG WFSF G+R+GQGR
Sbjct: 246 RVKVVKNKVAPPFKEVEFDIMYGQGISREGDVLDLASNENIVEKSGTWFSFGGERIGQGR 305

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           E +K F RE+ EI + IES L +  G+
Sbjct: 306 EQAKAFFREHPEILQQIESRLFEKFGI 332


>gi|289669642|ref|ZP_06490717.1| recombinase A [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 344

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/325 (67%), Positives = 276/325 (84%), Gaps = 4/325 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AALSQI++ +GKG++M++G +  + E +EV+ +GSL LDIALGIGG PKGR+V
Sbjct: 4   NKKRALSAALSQIEKQFGKGSVMRMGDR--VIEAVEVIPTGSLMLDIALGIGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAQCQKLGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS +VDI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSSSVDIVVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  ++VFINQ+RMKIGVM    SPE TTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 182 KRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELI++GV+A +VDK+GAW+S+  +R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIEMGVEAKLVDKAGAWYSYGDERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333
           G++N++ +LR+N ++A  +E+ LR+
Sbjct: 302 GKDNARTYLRDNPQVAVRLEAELRE 326


>gi|117617987|ref|YP_858164.1| recombinase A [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|166199594|sp|A0KPG3|RECA_AERHH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|117559394|gb|ABK36342.1| recA protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 354

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/323 (67%), Positives = 268/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LD+ALGIGG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDSKTM--DIEAISTGSLSLDVALGIGGLPCGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD IYA KLGV++ +LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS AVD+I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 122 EQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+ +FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+T
Sbjct: 182 KNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF I YG GIS  GEL+DLGVK  ++DK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVAPPFKQAEFQIFYGAGISKEGELVDLGVKHKLIDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N      EN  +A  +E+ LR+
Sbjct: 302 ANVMKLFAENKAMAGEVEARLRE 324


>gi|258545021|ref|ZP_05705255.1| recombinase A [Cardiobacterium hominis ATCC 15826]
 gi|258519719|gb|EEV88578.1| recombinase A [Cardiobacterium hominis ATCC 15826]
          Length = 363

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 214/324 (66%), Positives = 272/324 (83%), Gaps = 1/324 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+A L+Q+ + +GKG +M+LG Q +  + I+ +S+GSLGLDIALGIGG P+GRIV
Sbjct: 8   EQEKALKAVLAQLDKQFGKGTVMRLGDQTTEHD-IQAISTGSLGLDIALGIGGLPRGRIV 66

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA++QK GGT AF+DAEHALD IYARKLGV+  +L I+QPDTG
Sbjct: 67  EIYGPESSGKTTLTLHVIAEAQKAGGTAAFIDAEHALDPIYARKLGVNTDDLYITQPDTG 126

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGA  +IVIDSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 127 EQALEIADALVRSGAFSVIVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 186

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+ D + GNQT
Sbjct: 187 KRANTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEGDEVLGNQT 246

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFD++YG+GIS  GE+IDLGV   ++ KSGAW+S+   ++GQG+
Sbjct: 247 RVKVVKNKVSPPFKQAEFDVLYGQGISRIGEIIDLGVAIDVIQKSGAWYSYGSDKIGQGK 306

Query: 311 ENSKIFLRENIEIAENIESLLRQN 334
           E  + +L E  E+A  IE+ +R++
Sbjct: 307 EKVRAYLTEKPELAAEIEAKIREH 330


>gi|149394998|gb|ABR27353.1| RecA [Burkholderia cepacia]
          Length = 312

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/309 (69%), Positives = 269/309 (87%), Gaps = 1/309 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           +G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  I
Sbjct: 5   QGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 63

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+
Sbjct: 64  AELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 123

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG
Sbjct: 124 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 183

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  F
Sbjct: 184 VMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 243

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           DI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE
Sbjct: 244 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 303

Query: 329 SLLRQNAGL 337
           + +R++ G+
Sbjct: 304 NRIRESLGV 312


>gi|149394990|gb|ABR27349.1| RecA [Burkholderia cenocepacia]
          Length = 311

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/306 (70%), Positives = 267/306 (87%), Gaps = 1/306 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           +G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  I
Sbjct: 6   QGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 64

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+
Sbjct: 65  AELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 124

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG
Sbjct: 125 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 184

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  F
Sbjct: 185 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 244

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           DI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE
Sbjct: 245 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 304

Query: 329 SLLRQN 334
           + +R++
Sbjct: 305 NRIRES 310


>gi|192362324|ref|YP_001982693.1| recombinase A [Cellvibrio japonicus Ueda107]
 gi|190688489|gb|ACE86167.1| recA protein [Cellvibrio japonicus Ueda107]
          Length = 353

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 209/322 (64%), Positives = 273/322 (84%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AAL QI+R +GKG +M++G +  +   I  +S+GSLGLD+ALGIGG PKGRI+
Sbjct: 9   NKEKALQAALGQIERQFGKGTVMRMGDREQMV--IPAISTGSLGLDVALGIGGLPKGRII 66

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++Q+ GGTCAF+DAEHALD IYA KLGV++ +L++SQPDTG
Sbjct: 67  EIYGPESSGKTTLTLQVIAEAQRQGGTCAFIDAEHALDPIYATKLGVNVGDLIVSQPDTG 126

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALE+TDMLVRSGA+D++V+DSVAALTPRAEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 127 EQALEVTDMLVRSGAIDVLVVDSVAALTPRAEIEGEMGDHHVGLQARLMSQALRKITGNI 186

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRRVG++K+ + + G++T
Sbjct: 187 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRVGAVKEGEEVIGSET 246

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF I+YG GI+  GE++D GVK  ++DK+GAW+S++G ++GQG+
Sbjct: 247 RVKVVKNKVAPPFKQAEFQILYGSGINRMGEIVDYGVKLGLIDKAGAWYSYQGNKIGQGK 306

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N   FL+EN  IA+ +E  +R
Sbjct: 307 NNVIKFLQENQAIAQELEQKVR 328


>gi|190571327|ref|YP_001975685.1| recA protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
 gi|213018723|ref|ZP_03334531.1| recA protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
 gi|238058621|sp|B3CMC0|RECA_WOLPP RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|190357599|emb|CAQ55040.1| recA protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
 gi|212995674|gb|EEB56314.1| recA protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
          Length = 355

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/332 (65%), Positives = 275/332 (82%), Gaps = 2/332 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M +  E    DK KAL+ A+SQI++ +GKGAIM+L  + +  E I+ +S+GS+ LD ALG
Sbjct: 1   MAHNPEERNNDKQKALDNAISQIEKAFGKGAIMKL--KQNPVEKIDTISTGSIALDSALG 58

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG PKGRI+EI+GPESSGKTTLALH IA++QK GG CAF+DAEHALD IYARKLGV   
Sbjct: 59  VGGLPKGRIIEIFGPESSGKTTLALHVIAEAQKKGGLCAFIDAEHALDVIYARKLGVKTD 118

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +L+ISQPDTGEQAL I + LV S AVD+IVIDSVAALTPRAEIEGDMG+   G+QARL+S
Sbjct: 119 DLVISQPDTGEQALHIVEYLVCSSAVDVIVIDSVAALTPRAEIEGDMGDQHMGLQARLLS 178

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
             LRKLTS +S++ CIL+FINQ+RMKIGV++G+PETTTGGNALKFY+S+RLDIR+VG+IK
Sbjct: 179 HGLRKLTSVVSKANCILIFINQIRMKIGVVYGNPETTTGGNALKFYTSIRLDIRKVGAIK 238

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           DK++ITGN+TRVKVVKNK+A PF++ +FDIMY EGIS  GE+ID+G K  +++K+GA++S
Sbjct: 239 DKENITGNETRVKVVKNKVAPPFREAKFDIMYNEGISKLGEIIDIGAKLGVLEKAGAYYS 298

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           +   RLGQGREN K +L+ N EIA  IE+ +R
Sbjct: 299 YNNTRLGQGRENVKSYLKANKEIASEIETKIR 330


>gi|149395004|gb|ABR27356.1| RecA [Burkholderia cenocepacia]
          Length = 309

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/306 (70%), Positives = 267/306 (87%), Gaps = 1/306 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           +G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  I
Sbjct: 4   QGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 62

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+
Sbjct: 63  AELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 122

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG
Sbjct: 123 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 182

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  F
Sbjct: 183 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 242

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           DI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE
Sbjct: 243 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 302

Query: 329 SLLRQN 334
           + +R++
Sbjct: 303 NRIRES 308


>gi|149394994|gb|ABR27351.1| RecA [Burkholderia cenocepacia]
          Length = 308

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/306 (70%), Positives = 267/306 (87%), Gaps = 1/306 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           +G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  I
Sbjct: 3   QGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 61

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+
Sbjct: 62  AELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 121

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG
Sbjct: 122 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 181

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  F
Sbjct: 182 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 241

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           DI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE
Sbjct: 242 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 301

Query: 329 SLLRQN 334
           + +R++
Sbjct: 302 NRIRES 307


>gi|296837353|gb|ADH59535.1| DNA recombinase [Burkholderia contaminans]
          Length = 306

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/307 (70%), Positives = 267/307 (86%), Gaps = 1/307 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQNAG 336
            +R++ G
Sbjct: 300 RIRESLG 306


>gi|312959310|ref|ZP_07773827.1| RecA [Pseudomonas fluorescens WH6]
 gi|311286027|gb|EFQ64591.1| RecA [Pseudomonas fluorescens WH6]
          Length = 352

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 223/353 (63%), Positives = 279/353 (79%), Gaps = 10/353 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE+IDLGV    V+KSGAW+++ G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            NS  FL +N +IA  +E  +R       D LL  PA + K  A+++  + VE
Sbjct: 302 ANSAKFLADNPDIAATLEKQIR-------DKLLT-PAPDVKATANREPVEEVE 346


>gi|70728613|ref|YP_258362.1| recombinase A [Pseudomonas fluorescens Pf-5]
 gi|76363337|sp|Q4KHC1|RECA_PSEF5 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|68342912|gb|AAY90518.1| recA protein [Pseudomonas fluorescens Pf-5]
          Length = 350

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 220/348 (63%), Positives = 277/348 (79%), Gaps = 3/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAQAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PF+Q EF I+YG+GI   GE+IDLGV    ++KSGAW+S++G ++GQG+
Sbjct: 242 RVKIVKNKVAPPFRQAEFQILYGKGIYLNGEIIDLGVLHGFLEKSGAWYSYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD-ADKD 357
            NS  FL++N EI   +E  +R+     +  +   P   T+DD AD D
Sbjct: 302 ANSAKFLQDNPEIGNALEKQIREKLLTASPDVKANPVKETEDDMADAD 349


>gi|66270756|gb|AAY43691.1| RecA/GFP fusion protein [Cloning vector pSJS1472]
          Length = 593

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 219/352 (62%), Positives = 286/352 (81%), Gaps = 11/352 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD++NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIENLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
            N+  +L++N E A+ IE  +R+        LL  P  N+  D   DD++ V
Sbjct: 304 ANATAWLKDNPETAKEIEKKVRE-------LLLSNP--NSTPDFSVDDSEGV 346


>gi|296803122|gb|ADH51637.1| DNA recombinase [Burkholderia contaminans]
          Length = 311

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/311 (69%), Positives = 270/311 (86%), Gaps = 1/311 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   + I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 2   FGKGSIMRMGD-GEAADNIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 60

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 61  VIAELQKLGGTTAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 120

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SL G+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 121 DMIVIDSVAALVPKAEIEGEMGDSLLGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 180

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 181 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 240

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 241 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 300

Query: 327 IESLLRQNAGL 337
           IE+ +R++ G+
Sbjct: 301 IENRIRESLGV 311


>gi|15677302|ref|NP_274457.1| recombinase A [Neisseria meningitidis MC58]
 gi|254805226|ref|YP_003083447.1| RecA protein [Neisseria meningitidis alpha14]
 gi|296314218|ref|ZP_06864159.1| protein RecA [Neisseria polysaccharea ATCC 43768]
 gi|304387168|ref|ZP_07369412.1| recombination protein A [Neisseria meningitidis ATCC 13091]
 gi|12644335|sp|P56988|RECA_NEIMB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|7226686|gb|AAF41805.1| recA protein [Neisseria meningitidis MC58]
 gi|93117289|gb|ABE99562.1| RecA [Neisseria meningitidis]
 gi|254668768|emb|CBA06666.1| RecA protein [Neisseria meningitidis alpha14]
 gi|296839117|gb|EFH23055.1| protein RecA [Neisseria polysaccharea ATCC 43768]
 gi|304338772|gb|EFM04882.1| recombination protein A [Neisseria meningitidis ATCC 13091]
 gi|325130513|gb|EGC53268.1| protein RecA [Neisseria meningitidis OX99.30304]
 gi|325134574|gb|EGC57218.1| protein RecA [Neisseria meningitidis M13399]
 gi|325142629|gb|EGC65020.1| protein RecA [Neisseria meningitidis 961-5945]
 gi|325201857|gb|ADY97311.1| protein RecA [Neisseria meningitidis M01-240149]
 gi|325205801|gb|ADZ01254.1| protein RecA [Neisseria meningitidis M04-240196]
 gi|325208391|gb|ADZ03843.1| protein RecA [Neisseria meningitidis NZ-05/33]
          Length = 348

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 220/323 (68%), Positives = 275/323 (85%), Gaps = 3/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           DKSKAL AAL+QI++ +GKGAIM++ GSQ    E +EV+S+GSLGLD+ALG+GG P+GRI
Sbjct: 4   DKSKALAAALAQIEKSFGKGAIMKMDGSQQE--ENLEVISTGSLGLDLALGVGGLPRGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEI+GPESSGKTTL L  +AQ QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDT
Sbjct: 62  VEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSG +D++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  
Sbjct: 122 GEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGH 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR GSIK  + + GN+
Sbjct: 182 IKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNE 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+GVK  I++KSGAW+S+ G ++GQG
Sbjct: 242 TRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLR 332
           ++N +++L+EN E+A  I++ +R
Sbjct: 302 KDNVRVWLKENPEVANEIDAKIR 324


>gi|296803074|gb|ADH51613.1| DNA recombinase [Burkholderia contaminans]
 gi|296803078|gb|ADH51615.1| DNA recombinase [Burkholderia contaminans]
          Length = 306

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/307 (70%), Positives = 267/307 (86%), Gaps = 1/307 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQNAG 336
            +R++ G
Sbjct: 300 RIRESLG 306


>gi|296803070|gb|ADH51611.1| DNA recombinase [Burkholderia ambifaria]
          Length = 305

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 215/305 (70%), Positives = 267/305 (87%), Gaps = 1/305 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A
Sbjct: 1   GSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQN 334
            +R++
Sbjct: 300 RIRES 304


>gi|330831304|ref|YP_004394256.1| recombinase A [Aeromonas veronii B565]
 gi|328806440|gb|AEB51639.1| recombinase A [Aeromonas veronii B565]
          Length = 354

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/323 (67%), Positives = 268/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LD+ALGIGG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDSKTM--DIEAISTGSLSLDVALGIGGLPCGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD IYA KLGV++ +LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS AVD+I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 122 EQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+ +FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+T
Sbjct: 182 KNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF I YG GIS  GEL+DLGVK  ++DK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVAPPFKQAEFQIFYGAGISKEGELVDLGVKHKLIDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N      EN  +A  +E+ LR+
Sbjct: 302 ANVMKLFAENKVMAGEVEARLRE 324


>gi|296803068|gb|ADH51610.1| DNA recombinase [Burkholderia cenocepacia]
          Length = 310

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/311 (69%), Positives = 269/311 (86%), Gaps = 1/311 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T VKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETFVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGE IS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGECISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGL 337
           IE+ +R++ G+
Sbjct: 300 IENRIRESLGV 310


>gi|149395000|gb|ABR27354.1| RecA [Burkholderia sp. ESR85]
          Length = 309

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/306 (70%), Positives = 267/306 (87%), Gaps = 1/306 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           +G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  I
Sbjct: 2   QGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 60

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+
Sbjct: 61  AELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 120

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG
Sbjct: 121 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 180

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  F
Sbjct: 181 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 240

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           DI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE
Sbjct: 241 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 300

Query: 329 SLLRQN 334
           + +R++
Sbjct: 301 NRIRES 306


>gi|262279350|ref|ZP_06057135.1| DNA strand exchange and recombination protein RecA [Acinetobacter
           calcoaceticus RUH2202]
 gi|262259701|gb|EEY78434.1| DNA strand exchange and recombination protein RecA [Acinetobacter
           calcoaceticus RUH2202]
          Length = 348

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 215/323 (66%), Positives = 267/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL+AALSQI++ +GK  +M+LG   +  + +E VS+GSL LDIALGIGG PKGRIV
Sbjct: 4   NKSKALQAALSQIEKQFGKNTVMRLGD--NTVQAVEAVSTGSLTLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ L  IAQ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD G
Sbjct: 62  EIYGPESSGKTTMTLQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T + 
Sbjct: 122 EQALEIADMLVRSGAIDMIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNA 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G +K+ D I G++T
Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PF++  F I+YG+G +  GEL+DL V+  IV K+GAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKMAPPFREALFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N      EN ++A  IE  +R+
Sbjct: 302 NNVIRHFEENPQMAGEIERNIRE 324


>gi|254796889|ref|YP_003081726.1| protein RecA [Neorickettsia risticii str. Illinois]
 gi|254590125|gb|ACT69487.1| protein RecA [Neorickettsia risticii str. Illinois]
          Length = 327

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 215/330 (65%), Positives = 280/330 (84%), Gaps = 4/330 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +D+  AL+  ++QI++++GKG+IM    + +    +E +S+GS+GLD ALG GG PKGRI
Sbjct: 1   MDREDALKGVVAQIEKMFGKGSIMTFSQEPA---SVECISTGSIGLDSALG-GGIPKGRI 56

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EI+GPESSGKTTL LH IA++QK GGTCAFVDAEHALD +YA++LGV ++ LLISQPDT
Sbjct: 57  IEIFGPESSGKTTLTLHIIAEAQKNGGTCAFVDAEHALDPVYAKRLGVKIEELLISQPDT 116

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D L++SGAVD+IV+DSVAALTPRAEIEG+MG+   G+QARL+SQALRK+T+S
Sbjct: 117 GEQALEIVDSLIKSGAVDVIVVDSVAALTPRAEIEGEMGDLHVGLQARLLSQALRKITAS 176

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +SRS C++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVR+DIR++GSIKDK+ + GNQ
Sbjct: 177 VSRSNCVVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRIDIRKIGSIKDKEDVVGNQ 236

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQ EFDI+Y EGIS FGE+I++GV+  I++K+G+++S+   +LGQG
Sbjct: 237 TRVKVVKNKVAPPFKQAEFDIIYTEGISKFGEIIEIGVRNKIIEKAGSYYSYGDVKLGQG 296

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +EN K FL+EN E+A  +E  +R +  L+A
Sbjct: 297 KENVKQFLKENKELAAELEGKVRDSLLLIA 326


>gi|168207517|ref|ZP_02633522.1| recA protein [Clostridium perfringens E str. JGS1987]
 gi|169342683|ref|ZP_02863724.1| recA protein [Clostridium perfringens C str. JGS1495]
 gi|169299189|gb|EDS81259.1| recA protein [Clostridium perfringens C str. JGS1495]
 gi|170661136|gb|EDT13819.1| recA protein [Clostridium perfringens E str. JGS1987]
          Length = 352

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 213/327 (65%), Positives = 276/327 (84%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+E A+ QI++ +GKG++M+LG QGS    ++ VS+G L LDIALGIGG PKGRI+
Sbjct: 7   DKLKAIEMAMGQIEKQFGKGSVMKLGEQGS--PQMDAVSTGCLDLDIALGIGGVPKGRII 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A++QK GG  A++DAEHALD +YA++LGV++ +L++SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHVVAEAQKLGGAAAYIDAEHALDPVYAKRLGVNIDDLVVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ LVRSGA+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT +I
Sbjct: 125 EQALEITEALVRSGAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGTI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++S C+++FINQ+R K+G+MFG+PETT GG ALKFY+SVR+DIRR+ SIK  D ITGN+T
Sbjct: 185 NKSNCVVIFINQLREKVGIMFGNPETTPGGRALKFYASVRMDIRRIDSIKQGDGITGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFKQ EFDIMY EGIS  G ++D+GVK +IV KSGAWFS+   RLGQGR
Sbjct: 245 RVKIVKNKVAPPFKQAEFDIMYNEGISKEGNIVDVGVKENIVQKSGAWFSYGDIRLGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K +L+EN  +A +IE+ +R+   L
Sbjct: 305 ENAKQYLKENPAVALDIENQIREKYSL 331


>gi|149394992|gb|ABR27350.1| RecA [Burkholderia cepacia]
          Length = 315

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/308 (70%), Positives = 268/308 (87%), Gaps = 1/308 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           +G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  I
Sbjct: 6   QGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 64

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+
Sbjct: 65  AELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 124

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG
Sbjct: 125 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 184

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  F
Sbjct: 185 VMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 244

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           DI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE
Sbjct: 245 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 304

Query: 329 SLLRQNAG 336
           + +R++ G
Sbjct: 305 NRIRESLG 312


>gi|6225930|sp|Q9ZFF6|RECA_SHISO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|3859589|gb|AAC72856.1| recombinase/peptidase [Shigella sonnei]
          Length = 353

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 219/352 (62%), Positives = 284/352 (80%), Gaps = 11/352 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q  G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQLEGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
            N+  +L++N E A+ IE  +R+        LL  P  N+  D   DD++ V
Sbjct: 304 ANATAWLKDNPETAKEIEKKVRE-------LLLSNP--NSTPDFSVDDSEGV 346


>gi|58584684|ref|YP_198257.1| recombinase A [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|76363347|sp|Q5GSK9|RECA_WOLTR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|58419000|gb|AAW71015.1| RecA recombinase [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 355

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 214/335 (63%), Positives = 277/335 (82%), Gaps = 2/335 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+ A+SQI++ +GKGAIM+L  + +  E I+ +S+GS+ LD ALG+GG PKGRIV
Sbjct: 11  DRQKALDNAISQIEKAFGKGAIMKL--KQNPVEKIDTISTGSIALDSALGVGGLPKGRIV 68

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTLALH IA++QK GG CAF+DAEHALD +YARKLGV+  NL+ISQPDTG
Sbjct: 69  EIFGPESSGKTTLALHVIAEAQKKGGLCAFIDAEHALDVMYARKLGVNTDNLVISQPDTG 128

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL I + LV S AVD+IV+DSVAALTPRAEIEGDMG+   G+QARL+S  LRKLTS++
Sbjct: 129 EQALHIVEYLVCSSAVDVIVVDSVAALTPRAEIEGDMGDQHVGLQARLLSHGLRKLTSAV 188

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++ CIL+FINQ+RMKIGV++G+PETTTGGNALKFY+SVRLDIR+VG+IKDK+SI GN+T
Sbjct: 189 SKANCILIFINQIRMKIGVVYGNPETTTGGNALKFYTSVRLDIRKVGAIKDKESIKGNET 248

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++ +FDIMY EG+S  GE+ID+G K  +++K+GA++S+   RLGQGR
Sbjct: 249 RVKVVKNKVAPPFREAKFDIMYNEGVSKLGEIIDIGAKLGVLEKAGAYYSYNNTRLGQGR 308

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           EN K + + N E+A  +E+ +R   G   +S+  E
Sbjct: 309 ENVKNYFKANKEVANEVEAKIRDLLGNSDNSITME 343


>gi|152997733|ref|YP_001342568.1| recA protein [Marinomonas sp. MWYL1]
 gi|150838657|gb|ABR72633.1| recA protein [Marinomonas sp. MWYL1]
          Length = 358

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/324 (67%), Positives = 271/324 (83%), Gaps = 2/324 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AALSQI+R +GKGAIM++G +G+  + I+ VS+GSLGLDIALG GG P GRI 
Sbjct: 7   NKKKALDAALSQIERQFGKGAIMKMG-EGAKLD-IDTVSTGSLGLDIALGAGGLPYGRIC 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAF+DAEHALD  YA KLGV++ +LLISQPDTG
Sbjct: 65  EIYGPESSGKTTLTLSVIAEAQKQGKTCAFIDAEHALDPSYAEKLGVNIADLLISQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS +VD+I++DSVAAL P++EIEG+MG S  G+QARL+SQA+RKLT SI
Sbjct: 125 EQALEIVDMLVRSNSVDVIIVDSVAALVPKSEIEGEMGSSSVGVQARLLSQAMRKLTGSI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GS+K  D + GN+T
Sbjct: 185 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKQGDEVIGNET 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF IMYG GI   GE+IDLGVK   VDK+GAW+++ G ++GQG+
Sbjct: 245 RVKVVKNKIAPPFKQAEFQIMYGAGIYRMGEVIDLGVKQGFVDKAGAWYAYNGNKIGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQN 334
            N+  FL +N E+A+ IE+ +R++
Sbjct: 305 ANAAQFLADNPEMAKEIEAKIRED 328


>gi|296803116|gb|ADH51634.1| DNA recombinase [Burkholderia cepacia]
          Length = 304

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/303 (71%), Positives = 265/303 (87%), Gaps = 1/303 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 2   FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 60

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 61  VIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 120

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 121 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 180

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 181 IGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 240

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 241 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 300

Query: 327 IES 329
           IE+
Sbjct: 301 IEN 303


>gi|157326917|gb|ABV44571.1| RecA [Burkholderia cenocepacia]
          Length = 303

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/304 (71%), Positives = 265/304 (87%), Gaps = 1/304 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI
Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299

Query: 324 AENI 327
           A  I
Sbjct: 300 AREI 303


>gi|59801158|ref|YP_207870.1| recombinase A [Neisseria gonorrhoeae FA 1090]
 gi|194098701|ref|YP_002001763.1| recombinase A [Neisseria gonorrhoeae NCCP11945]
 gi|254493796|ref|ZP_05106967.1| recombinase A [Neisseria gonorrhoeae 1291]
 gi|268594853|ref|ZP_06129020.1| recombinase A [Neisseria gonorrhoeae 35/02]
 gi|268596767|ref|ZP_06130934.1| recombinase A [Neisseria gonorrhoeae FA19]
 gi|268599071|ref|ZP_06133238.1| recA [Neisseria gonorrhoeae MS11]
 gi|268601424|ref|ZP_06135591.1| recA [Neisseria gonorrhoeae PID18]
 gi|268603755|ref|ZP_06137922.1| recA [Neisseria gonorrhoeae PID1]
 gi|268682224|ref|ZP_06149086.1| recA [Neisseria gonorrhoeae PID332]
 gi|268684375|ref|ZP_06151237.1| recA [Neisseria gonorrhoeae SK-92-679]
 gi|268686696|ref|ZP_06153558.1| recA [Neisseria gonorrhoeae SK-93-1035]
 gi|291043741|ref|ZP_06569457.1| recombinase A [Neisseria gonorrhoeae DGI2]
 gi|293399025|ref|ZP_06643190.1| recombinase A [Neisseria gonorrhoeae F62]
 gi|2851591|sp|P21152|RECA_NEIGO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|76363336|sp|Q5F8M9|RECA_NEIG1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238690210|sp|B4RLX8|RECA_NEIG2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|59718053|gb|AAW89458.1| putative RecA protein [Neisseria gonorrhoeae FA 1090]
 gi|193933991|gb|ACF29815.1| recombinase A [Neisseria gonorrhoeae NCCP11945]
 gi|226512836|gb|EEH62181.1| recombinase A [Neisseria gonorrhoeae 1291]
 gi|268548242|gb|EEZ43660.1| recombinase A [Neisseria gonorrhoeae 35/02]
 gi|268550555|gb|EEZ45574.1| recombinase A [Neisseria gonorrhoeae FA19]
 gi|268583202|gb|EEZ47878.1| recA [Neisseria gonorrhoeae MS11]
 gi|268585555|gb|EEZ50231.1| recA [Neisseria gonorrhoeae PID18]
 gi|268587886|gb|EEZ52562.1| recA [Neisseria gonorrhoeae PID1]
 gi|268622508|gb|EEZ54908.1| recA [Neisseria gonorrhoeae PID332]
 gi|268624659|gb|EEZ57059.1| recA [Neisseria gonorrhoeae SK-92-679]
 gi|268626980|gb|EEZ59380.1| recA [Neisseria gonorrhoeae SK-93-1035]
 gi|291012204|gb|EFE04193.1| recombinase A [Neisseria gonorrhoeae DGI2]
 gi|291610439|gb|EFF39549.1| recombinase A [Neisseria gonorrhoeae F62]
 gi|317164298|gb|ADV07839.1| recombinase A [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 348

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 221/328 (67%), Positives = 278/328 (84%), Gaps = 3/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           DKSKAL AAL+QI++ +GKGAIM++ GSQ    E +EV+S+GSLGLD+ALG+GG P+GRI
Sbjct: 4   DKSKALAAALAQIEKSFGKGAIMKMDGSQQE--ENLEVISTGSLGLDLALGVGGLPRGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEI+GPESSGKTTL L  +AQ QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDT
Sbjct: 62  VEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSG +D++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  
Sbjct: 122 GEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGH 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR GSIK  + + GN+
Sbjct: 182 IKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNE 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+GVK  I++KSGAW+S+ G ++GQG
Sbjct: 242 TRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           ++N +++L+EN EI++ I++ +R   G+
Sbjct: 302 KDNVRVWLKENPEISDEIDAKIRALNGV 329


>gi|1092932|prf||2102240A recA gene
          Length = 352

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 223/353 (63%), Positives = 279/353 (79%), Gaps = 10/353 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE+IDLGV    V+KSGAW+++ G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            NS  FL +N +IA  +E  +R       D LL  PA + K  A+++  + VE
Sbjct: 302 ANSAKFLADNPDIAATLEKQIR-------DKLLT-PAPDVKAAANREPVEEVE 346


>gi|296837445|gb|ADH59581.1| DNA recombinase [Burkholderia vietnamiensis]
 gi|296837447|gb|ADH59582.1| DNA recombinase [Burkholderia vietnamiensis]
          Length = 304

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/305 (70%), Positives = 267/305 (87%), Gaps = 1/305 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQN 334
            +R++
Sbjct: 300 RIRES 304


>gi|260914564|ref|ZP_05921032.1| recombination protein A [Pasteurella dagmatis ATCC 43325]
 gi|260631355|gb|EEX49538.1| recombination protein A [Pasteurella dagmatis ATCC 43325]
          Length = 354

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/357 (63%), Positives = 285/357 (79%), Gaps = 16/357 (4%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K+KAL AAL QI++ +GKG+IM+LG   ++   +E VS+GSL LD+ALGIGG P GRIV
Sbjct: 6   EKNKALAAALGQIEKQFGKGSIMKLGDTQAL--DVEAVSTGSLSLDVALGIGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IAQ+QK G TCAF+DAEHALD IYA KLGV++  LL+SQPD G
Sbjct: 64  EIFGPESSGKTTLTLSVIAQAQKEGKTCAFIDAEHALDPIYAAKLGVNVNELLVSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVD+I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT  I
Sbjct: 124 EQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLTGQI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD + + GN+T
Sbjct: 184 KNSNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVIGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PF+QV+F I+YG+GIS  GELI+LGVK  +VDKSGAW+++ G+++GQG+
Sbjct: 244 RVKVVKNKVAAPFRQVDFQILYGQGISKTGELIELGVKHKLVDKSGAWYAYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA------INTKDDADKD-DTD 360
            N+  +L E+ E A  +E+ LR       + LL  P       I  +++AD D D+D
Sbjct: 304 ANAMKWLEEHPEEALALETKLR-------NELLANPEKVLAADIAEQNEADMDLDSD 353


>gi|307546335|ref|YP_003898814.1| recombinase A [Halomonas elongata DSM 2581]
 gi|307218359|emb|CBV43629.1| recombinase A [Halomonas elongata DSM 2581]
          Length = 356

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/322 (67%), Positives = 266/322 (82%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++SKAL AALSQI R +GKG +M+LG    +   +  VS+GSLGLDIALGIGG P GR+V
Sbjct: 6   NRSKALNAALSQIDRQFGKGTVMRLGDTPRV--AMPSVSTGSLGLDIALGIGGLPYGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA++QK G TCAF+DAEHALD  YA KLGV+L +LL+SQPDTG
Sbjct: 64  EIFGPESSGKTTLTLAVIAEAQKQGKTCAFIDAEHALDPSYAEKLGVNLDDLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG VD+I+IDSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T  +
Sbjct: 124 EQALEICDMLVRSGGVDVIIIDSVAALTPRAEIEGEMGDSHVGLQARLMSQALRKVTGHM 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR GS+K  D + GN+T
Sbjct: 184 KNANCMVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSVKQGDEVVGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE++DLGV+  +VDK+GAW+S++G ++GQG+
Sbjct: 244 RVKVVKNKVAPPFRQAEFQILYGKGIYHAGEVVDLGVQCGLVDKAGAWYSYQGNKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N+  FL +N  + E IES +R
Sbjct: 304 ANAAQFLEDNPAVMEEIESQIR 325


>gi|121607356|ref|YP_995163.1| recombination protein RecA [Verminephrobacter eiseniae EF01-2]
 gi|121551996|gb|ABM56145.1| recA protein [Verminephrobacter eiseniae EF01-2]
          Length = 367

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 223/316 (70%), Positives = 276/316 (87%), Gaps = 1/316 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG IM+LG +G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 28  QIEKQFGKGTIMRLG-EGEVIEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 86

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TLAL  IA+ QK GGTCAFVDAEHALD  YA+KLGV L +LLISQPDTGEQALEI D LV
Sbjct: 87  TLALQVIAEMQKQGGTCAFVDAEHALDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLV 146

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD+IV+DSVAALTP+AEIEGDMG++LPG+QARLMSQALRKLT++I ++ C++VFIN
Sbjct: 147 RSGAVDLIVVDSVAALTPKAEIEGDMGDALPGLQARLMSQALRKLTATIKKTNCMVVFIN 206

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK  D   GN+T+VKVVKNK++ 
Sbjct: 207 QIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSP 266

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PFK  EFDI++GEGIS  GE+ID+GV A IV+KSGAW+++ G+++GQGR+N++ FLREN 
Sbjct: 267 PFKTAEFDILFGEGISREGEIIDMGVNAKIVEKSGAWYAYNGEKIGQGRDNAREFLRENP 326

Query: 322 EIAENIESLLRQNAGL 337
           ++A  IE+ +R + G+
Sbjct: 327 DLAHEIENKVRHSLGI 342


>gi|296837455|gb|ADH59586.1| DNA recombinase [Burkholderia vietnamiensis]
          Length = 305

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/305 (70%), Positives = 267/305 (87%), Gaps = 1/305 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQN 334
            +R++
Sbjct: 300 RIRES 304


>gi|296837419|gb|ADH59568.1| DNA recombinase [Burkholderia lata]
 gi|296837425|gb|ADH59571.1| DNA recombinase [Burkholderia lata]
          Length = 304

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/305 (70%), Positives = 266/305 (87%), Gaps = 1/305 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQN 334
            +R++
Sbjct: 300 RIRES 304


>gi|149394988|gb|ABR27348.1| RecA [Burkholderia cenocepacia]
          Length = 305

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/305 (70%), Positives = 266/305 (87%), Gaps = 1/305 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQN 334
            +R++
Sbjct: 300 RIRES 304


>gi|168216960|ref|ZP_02642585.1| recA protein [Clostridium perfringens NCTC 8239]
 gi|182380878|gb|EDT78357.1| recA protein [Clostridium perfringens NCTC 8239]
          Length = 352

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 215/347 (61%), Positives = 285/347 (82%), Gaps = 4/347 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+E A+ QI++ +GKG++M+LG QG+    ++ VS+G L LDIALGIGG PKGRI+
Sbjct: 7   DKLKAIEMAMGQIEKQFGKGSVMKLGEQGA--PQMDAVSTGCLDLDIALGIGGVPKGRII 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A++QK GG  A++DAEHALD +YA++LGV++ +L++SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHVVAEAQKLGGAAAYIDAEHALDPVYAKRLGVNIDDLVVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ LVRSGA+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT +I
Sbjct: 125 EQALEITEALVRSGAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGTI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++S C+++FINQ+R K+G+MFG+PETT GG ALKFY+SVR+DIRR+ SIK  D ITGN+T
Sbjct: 185 NKSNCVVIFINQLREKVGIMFGNPETTPGGRALKFYASVRMDIRRIDSIKQGDGITGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFKQ EFDIMY EGIS  G ++D+GVK +IV KSGAWFS+   RLGQGR
Sbjct: 245 RVKIVKNKVAPPFKQAEFDIMYNEGISKEGNIVDVGVKENIVQKSGAWFSYGDIRLGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI--NTKDDAD 355
           EN+K +L+EN  +A +IE+ +R+   L     ++  ++  NT+D  +
Sbjct: 305 ENAKQYLKENPAVALDIENQIREKYSLPLAKAVESTSVEENTEDSVE 351


>gi|188596458|pdb|3CMU|A Chain A, Mechanism Of Homologous Recombination From The Reca-
           SsdnaDSDNA STRUCTURES
          Length = 2050

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/323 (65%), Positives = 274/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 329 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 386

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 387 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 446

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 447 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 506

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 507 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 566

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 567 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 626

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L++N E A+ IE  +R+
Sbjct: 627 ANATAWLKDNPETAKEIEKKVRE 649



 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/323 (65%), Positives = 274/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 678 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 735

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 736 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 795

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 796 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 855

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 856 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 915

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 916 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 975

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L++N E A+ IE  +R+
Sbjct: 976 ANATAWLKDNPETAKEIEKKVRE 998



 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/323 (65%), Positives = 274/323 (84%), Gaps = 2/323 (0%)

Query: 11   DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
            +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 1027 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 1084

Query: 71   EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
            EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 1085 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 1144

Query: 131  EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
            EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 1145 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 1204

Query: 191  SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 1205 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 1264

Query: 251  RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
            RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 1265 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 1324

Query: 311  ENSKIFLRENIEIAENIESLLRQ 333
             N+  +L++N E A+ IE  +R+
Sbjct: 1325 ANATAWLKDNPETAKEIEKKVRE 1347



 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/323 (65%), Positives = 274/323 (84%), Gaps = 2/323 (0%)

Query: 11   DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
            +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 1373 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 1430

Query: 71   EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
            EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 1431 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 1490

Query: 131  EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
            EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 1491 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 1550

Query: 191  SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 1551 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 1610

Query: 251  RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
            RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 1611 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 1670

Query: 311  ENSKIFLRENIEIAENIESLLRQ 333
             N+  +L++N E A+ IE  +R+
Sbjct: 1671 ANATAWLKDNPETAKEIEKKVRE 1693



 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/323 (65%), Positives = 274/323 (84%), Gaps = 2/323 (0%)

Query: 11   DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
            +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 1721 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 1778

Query: 71   EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
            EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 1779 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 1838

Query: 131  EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
            EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 1839 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 1898

Query: 191  SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 1899 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 1958

Query: 251  RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
            RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 1959 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 2018

Query: 311  ENSKIFLRENIEIAENIESLLRQ 333
             N+  +L++N E A+ IE  +R+
Sbjct: 2019 ANATAWLKDNPETAKEIEKKVRE 2041



 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 194/289 (67%), Positives = 250/289 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 12  VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 71

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYARKLGVD+ NLL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE
Sbjct: 72  HALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 131

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 132 GEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALK 191

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR+G++K+ +++ G++TRVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+D
Sbjct: 192 FYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVD 251

Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           LGVK  +++K+GAW+S+KG+++GQG+ N+  +L++N E A+ IE  +R+
Sbjct: 252 LGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRE 300


>gi|188596459|pdb|3CMV|A Chain A, Mechanism Of Homologous Recombination From The Reca-
           SsdnaDSDNA STRUCTURES
 gi|188596460|pdb|3CMV|B Chain B, Mechanism Of Homologous Recombination From The Reca-
           SsdnaDSDNA STRUCTURES
 gi|188596461|pdb|3CMV|C Chain C, Mechanism Of Homologous Recombination From The Reca-
           SsdnaDSDNA STRUCTURES
 gi|188596462|pdb|3CMV|D Chain D, Mechanism Of Homologous Recombination From The Reca-
           SsdnaDSDNA STRUCTURES
 gi|188596463|pdb|3CMV|E Chain E, Mechanism Of Homologous Recombination From The Reca-
           SsdnaDSDNA STRUCTURES
 gi|188596464|pdb|3CMV|F Chain F, Mechanism Of Homologous Recombination From The Reca-
           SsdnaDSDNA STRUCTURES
 gi|188596465|pdb|3CMV|G Chain G, Mechanism Of Homologous Recombination From The Reca-
           SsdnaDSDNA STRUCTURES
 gi|188596466|pdb|3CMV|H Chain H, Mechanism Of Homologous Recombination From The Reca-
           SsdnaDSDNA STRUCTURES
          Length = 1357

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/323 (65%), Positives = 274/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 329 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 386

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 387 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 446

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 447 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 506

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 507 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 566

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 567 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 626

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L++N E A+ IE  +R+
Sbjct: 627 ANATAWLKDNPETAKEIEKKVRE 649



 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/323 (65%), Positives = 274/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 678 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 735

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 736 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 795

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 796 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 855

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 856 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 915

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 916 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 975

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L++N E A+ IE  +R+
Sbjct: 976 ANATAWLKDNPETAKEIEKKVRE 998



 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/323 (65%), Positives = 274/323 (84%), Gaps = 2/323 (0%)

Query: 11   DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
            +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 1028 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 1085

Query: 71   EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
            EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 1086 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 1145

Query: 131  EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
            EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 1146 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 1205

Query: 191  SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 1206 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 1265

Query: 251  RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
            RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 1266 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 1325

Query: 311  ENSKIFLRENIEIAENIESLLRQ 333
             N+  +L++N E A+ IE  +R+
Sbjct: 1326 ANATAWLKDNPETAKEIEKKVRE 1348



 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 194/289 (67%), Positives = 250/289 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 12  VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 71

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYARKLGVD+ NLL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE
Sbjct: 72  HALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 131

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 132 GEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALK 191

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR+G++K+ +++ G++TRVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+D
Sbjct: 192 FYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVD 251

Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           LGVK  +++K+GAW+S+KG+++GQG+ N+  +L++N E A+ IE  +R+
Sbjct: 252 LGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRE 300


>gi|296837421|gb|ADH59569.1| DNA recombinase [Burkholderia lata]
          Length = 303

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/304 (71%), Positives = 265/304 (87%), Gaps = 1/304 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQ 333
            +R+
Sbjct: 300 RIRE 303


>gi|239999005|ref|ZP_04718929.1| recombinase A [Neisseria gonorrhoeae 35/02]
 gi|240014085|ref|ZP_04720998.1| recombinase A [Neisseria gonorrhoeae DGI18]
 gi|240016519|ref|ZP_04723059.1| recombinase A [Neisseria gonorrhoeae FA6140]
 gi|240080643|ref|ZP_04725186.1| recombinase A [Neisseria gonorrhoeae FA19]
 gi|240112992|ref|ZP_04727482.1| recombinase A [Neisseria gonorrhoeae MS11]
 gi|240115746|ref|ZP_04729808.1| recombinase A [Neisseria gonorrhoeae PID18]
 gi|240118042|ref|ZP_04732104.1| recombinase A [Neisseria gonorrhoeae PID1]
 gi|240121646|ref|ZP_04734608.1| recombinase A [Neisseria gonorrhoeae PID24-1]
 gi|240123596|ref|ZP_04736552.1| recombinase A [Neisseria gonorrhoeae PID332]
 gi|240125779|ref|ZP_04738665.1| recombinase A [Neisseria gonorrhoeae SK-92-679]
 gi|240128299|ref|ZP_04740960.1| recombinase A [Neisseria gonorrhoeae SK-93-1035]
 gi|260440443|ref|ZP_05794259.1| recombinase A [Neisseria gonorrhoeae DGI2]
          Length = 375

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 221/328 (67%), Positives = 278/328 (84%), Gaps = 3/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           DKSKAL AAL+QI++ +GKGAIM++ GSQ    E +EV+S+GSLGLD+ALG+GG P+GRI
Sbjct: 31  DKSKALAAALAQIEKSFGKGAIMKMDGSQQE--ENLEVISTGSLGLDLALGVGGLPRGRI 88

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEI+GPESSGKTTL L  +AQ QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDT
Sbjct: 89  VEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDT 148

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSG +D++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  
Sbjct: 149 GEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGH 208

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR GSIK  + + GN+
Sbjct: 209 IKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNE 268

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+GVK  I++KSGAW+S+ G ++GQG
Sbjct: 269 TRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQG 328

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           ++N +++L+EN EI++ I++ +R   G+
Sbjct: 329 KDNVRVWLKENPEISDEIDAKIRALNGV 356


>gi|188596455|pdb|3CMT|A Chain A, Mechanism Of Homologous Recombination From The Reca-
           SsdnaDSDNA STRUCTURES
 gi|188596456|pdb|3CMT|D Chain D, Mechanism Of Homologous Recombination From The Reca-
           SsdnaDSDNA STRUCTURES
 gi|188596469|pdb|3CMW|A Chain A, Mechanism Of Homologous Recombination From The Reca-
           SsdnaDSDNA STRUCTURES
 gi|188596470|pdb|3CMW|C Chain C, Mechanism Of Homologous Recombination From The Reca-
           SsdnaDSDNA STRUCTURES
 gi|188596475|pdb|3CMX|A Chain A, Mechanism Of Homologous Recombination From The Reca-
           SsdnaDSDNA STRUCTURES
 gi|188596476|pdb|3CMX|D Chain D, Mechanism Of Homologous Recombination From The Reca-
           SsdnaDSDNA STRUCTURES
          Length = 1706

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/323 (65%), Positives = 274/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 329 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 386

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 387 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 446

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 447 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 506

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 507 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 566

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 567 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 626

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L++N E A+ IE  +R+
Sbjct: 627 ANATAWLKDNPETAKEIEKKVRE 649



 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/323 (65%), Positives = 274/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 678 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 735

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 736 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 795

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 796 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 855

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 856 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 915

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 916 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 975

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L++N E A+ IE  +R+
Sbjct: 976 ANATAWLKDNPETAKEIEKKVRE 998



 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/323 (65%), Positives = 274/323 (84%), Gaps = 2/323 (0%)

Query: 11   DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
            +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 1028 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 1085

Query: 71   EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
            EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 1086 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 1145

Query: 131  EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
            EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 1146 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 1205

Query: 191  SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 1206 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 1265

Query: 251  RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
            RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 1266 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 1325

Query: 311  ENSKIFLRENIEIAENIESLLRQ 333
             N+  +L++N E A+ IE  +R+
Sbjct: 1326 ANATAWLKDNPETAKEIEKKVRE 1348



 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/323 (65%), Positives = 274/323 (84%), Gaps = 2/323 (0%)

Query: 11   DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
            +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 1377 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 1434

Query: 71   EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
            EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 1435 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 1494

Query: 131  EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
            EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 1495 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 1554

Query: 191  SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 1555 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 1614

Query: 251  RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
            RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 1615 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 1674

Query: 311  ENSKIFLRENIEIAENIESLLRQ 333
             N+  +L++N E A+ IE  +R+
Sbjct: 1675 ANATAWLKDNPETAKEIEKKVRE 1697



 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 194/289 (67%), Positives = 250/289 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 12  VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 71

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYARKLGVD+ NLL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE
Sbjct: 72  HALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 131

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 132 GEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALK 191

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR+G++K+ +++ G++TRVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+D
Sbjct: 192 FYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVD 251

Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           LGVK  +++K+GAW+S+KG+++GQG+ N+  +L++N E A+ IE  +R+
Sbjct: 252 LGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRE 300


>gi|254507386|ref|ZP_05119521.1| protein RecA [Vibrio parahaemolyticus 16]
 gi|219549642|gb|EED26632.1| protein RecA [Vibrio parahaemolyticus 16]
          Length = 363

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/345 (62%), Positives = 278/345 (80%), Gaps = 10/345 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 19  NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTG
Sbjct: 77  EIYGPESSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 137 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 196

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+T
Sbjct: 197 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNET 256

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ E  IMYG+G +  GELIDLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 257 RIKVVKNKIAAPFKQAETQIMYGQGFNREGELIDLGVKHKLIEKAGAWYSYNGDKIGQGK 316

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            N+  FLREN+E A+ I++ LR+        +L  PA    DDA+
Sbjct: 317 ANAGKFLRENVEAAQAIDAKLRE--------MLLSPAEIQPDDAE 353


>gi|157804130|ref|YP_001492679.1| recombinase A [Rickettsia canadensis str. McKiel]
 gi|166220673|sp|A8EZW1|RECA_RICCK RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|157785393|gb|ABV73894.1| recombinase A [Rickettsia canadensis str. McKiel]
          Length = 343

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 223/334 (66%), Positives = 283/334 (84%), Gaps = 2/334 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+  DK +A+ AAL+QI++ YGKG++M+LG + +I   IE VS+GSLGLD+ALGIGG PK
Sbjct: 1   MSNTDKERAIAAALAQIEKSYGKGSVMKLGQRPNI--DIEAVSTGSLGLDMALGIGGVPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA+KLGV++  L+ISQ
Sbjct: 59  GRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELIISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEITD L+RSG +D+++IDSVAAL P++EIEG+MG++    QARLMSQALRKL
Sbjct: 119 PDTGEQALEITDTLIRSGGIDMVIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+SISR+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ + 
Sbjct: 179 TASISRTNCIAVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEEVI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G+QT+VKVVKNK++ PFK  +FDIMYG GIS  GE+IDLGVK  IV+KSG+WFS+   R+
Sbjct: 239 GSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYNNVRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           GQGREN K +L+E+ +IA  IE ++R+ +  + +
Sbjct: 299 GQGRENVKQYLKEHPQIANEIEKIIREKSSKITN 332


>gi|91204932|ref|YP_537287.1| recombinase A [Rickettsia bellii RML369-C]
 gi|122990947|sp|Q1RKB6|RECA_RICBR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|91068476|gb|ABE04198.1| RecA [Rickettsia bellii RML369-C]
          Length = 343

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/344 (65%), Positives = 288/344 (83%), Gaps = 3/344 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+ +DK KA+ AAL+QI++ YGKG++M+LG + ++   IE VS+GSLGLDIALGIGG PK
Sbjct: 1   MSNIDKEKAVAAALAQIEKSYGKGSVMKLGQRPNV--DIESVSTGSLGLDIALGIGGIPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA+KLGV++  L+ISQ
Sbjct: 59  GRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELIISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++    QARLMSQALRKL
Sbjct: 119 PDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ + 
Sbjct: 179 TASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEEVI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G+QT+VKVVKNK++ PFK  +FDIMYG GIS  GE+IDLGVK  I++KSG+WFS+   R+
Sbjct: 239 GSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIIEKSGSWFSYNSVRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD-SLLQEPAIN 349
           GQGREN K +L++N +I+  IE L+R+ +  V + +  QE  +N
Sbjct: 299 GQGRENVKQYLKDNPKISNEIEKLVREKSSKVTNINFEQEEEVN 342


>gi|308212814|gb|ADO21635.1| RecA [Burkholderia arboris]
          Length = 304

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/305 (70%), Positives = 266/305 (87%), Gaps = 1/305 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQN 334
            +R++
Sbjct: 300 RIRES 304


>gi|28198030|ref|NP_778344.1| recombinase A [Xylella fastidiosa Temecula1]
 gi|182680657|ref|YP_001828817.1| recombinase A [Xylella fastidiosa M23]
 gi|32129953|sp|Q87F44|RECA_XYLFT RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238691049|sp|B2I680|RECA_XYLF2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|28056090|gb|AAO27993.1| recombination protein RecA [Xylella fastidiosa Temecula1]
 gi|182630767|gb|ACB91543.1| recA protein [Xylella fastidiosa M23]
 gi|307579118|gb|ADN63087.1| recombinase A [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 347

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 220/353 (62%), Positives = 286/353 (81%), Gaps = 13/353 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL  ALSQI++ +GKG++M++G +  + E +E + +GSL LD+ALGIGG PKGR+V
Sbjct: 4   NKKRALSVALSQIEKQFGKGSVMRMGDR--VIEAVEAIPTGSLMLDLALGIGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAQCQKRGGTAAFIDAEHALDPIYAGKLGVNVDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG++DI+VIDSVAALTPRAEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSGSIDIMVIDSVAALTPRAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  +++FINQ+RMKIG+M    SPETTTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 182 KRSNTLVIFINQLRMKIGIMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELI++GV+A +V+K+GAW+S+ G+R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIEMGVEAKLVEKAGAWYSYGGERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           G++N++ +LREN   A  +E+ LR+           EP   ++++ D+D  ++
Sbjct: 302 GKDNARGYLRENPHFAAKLEADLREKF---------EPTELSREEGDEDTLED 345


>gi|304404324|ref|ZP_07385986.1| recA protein [Paenibacillus curdlanolyticus YK9]
 gi|304347302|gb|EFM13134.1| recA protein [Paenibacillus curdlanolyticus YK9]
          Length = 353

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 221/352 (62%), Positives = 278/352 (78%), Gaps = 2/352 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  ALE AL QI++ +GKG+IM+LG   S    +E VSSG+L LDIALGIGGFP+GR++
Sbjct: 3   DRRAALEMALRQIEKQFGKGSIMKLGE--STHMQVETVSSGALALDIALGIGGFPRGRVI 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD +YA KLGV++  LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVALHAIAEVQKMGGQAAFIDAEHALDPLYASKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDIIV+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+RR+ SIK  + + GN+T
Sbjct: 181 SKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRRIESIKQGNDVVGNRT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PFKQ E DIMYGEGIS  G +ID+G +  IV KSGAWFS+ G RLGQGR
Sbjct: 241 RIKVVKNKVAPPFKQAEVDIMYGEGISREGSIIDIGTEHEIVQKSGAWFSYNGDRLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           EN+K FL+++ ++A  IE  +RQ   L   ++        K+D ++ + D++
Sbjct: 301 ENAKQFLKDHKDVAATIEQQIRQATQLSESAIQAATLAGEKEDEEEPNFDDL 352


>gi|260448251|gb|ACX38673.1| recA protein [Escherichia coli DH1]
 gi|315137306|dbj|BAJ44465.1| RecA protein [Escherichia coli DH1]
          Length = 353

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/352 (61%), Positives = 284/352 (80%), Gaps = 11/352 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++ +S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIDDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
            N+  +L++N E A+ IE  +R+        LL  P  N+  D   DD++ V
Sbjct: 304 ANATAWLKDNPETAKEIEKKVRE-------LLLSNP--NSTPDFSVDDSEGV 346


>gi|324005759|gb|EGB74978.1| protein RecA [Escherichia coli MS 57-2]
          Length = 358

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/352 (61%), Positives = 284/352 (80%), Gaps = 11/352 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 11  NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 68

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPD G
Sbjct: 69  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDPG 128

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 129 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 188

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 189 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 248

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 249 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 308

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
            N+  +L++N E A+ IE  +R+        LL  P  N+  D   DD++ V
Sbjct: 309 ANATAWLKDNPETAKEIEKKVRE-------LLLSNP--NSTPDFSVDDSEGV 351


>gi|170729337|ref|YP_001774770.1| recombinase A [Xylella fastidiosa M12]
 gi|238687900|sp|B0U1K8|RECA_XYLFM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|167964130|gb|ACA11140.1| recombination protein RecA [Xylella fastidiosa M12]
          Length = 347

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 219/353 (62%), Positives = 287/353 (81%), Gaps = 13/353 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL  ALSQI++ +GKG++M++G +  + E +E + +GSL LD+ALGIGG PKGR+V
Sbjct: 4   NKKRALSVALSQIEKQFGKGSVMRMGDR--VIEAVEAIPTGSLMLDLALGIGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAQCQKKGGTAAFIDAEHALDPIYAGKLGVNVDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG++DI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSGSIDIMVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  +++FINQ+RMKIG+M    SPETTTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 182 KRSNTLVIFINQLRMKIGIMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELI++GV+A +V+K+GAW+S+ G+R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIEMGVEAKLVEKAGAWYSYGGERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           G++N++ +LREN  +A  +E+ LR+           EP   ++++ D+D  ++
Sbjct: 302 GKDNARGYLRENPHLAAKLEADLREKF---------EPTELSREEGDEDTLED 345


>gi|170755068|ref|YP_001781947.1| recombinase A [Clostridium botulinum B1 str. Okra]
 gi|170761563|ref|YP_001787715.1| recombinase A [Clostridium botulinum A3 str. Loch Maree]
 gi|169120280|gb|ACA44116.1| recA protein [Clostridium botulinum B1 str. Okra]
 gi|169408552|gb|ACA56963.1| recA protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 355

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/327 (66%), Positives = 273/327 (83%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KA+EAA+ QI++ +GKG+IM+LG + SI   +E +S+GSL LDIALGIGG P+GRI+
Sbjct: 11  EKLKAIEAAMGQIEKQFGKGSIMKLG-EDSILN-VESISTGSLDLDIALGIGGVPRGRII 68

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTT+ALH +A++QK GG  AF+DAEHALD  YAR LGVD+ NL++SQPDTG
Sbjct: 69  EIFGPESSGKTTVALHILAEAQKIGGAAAFIDAEHALDPAYARNLGVDIDNLIVSQPDTG 128

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ LVRSGAVD+IV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL  SI
Sbjct: 129 EQALEITEALVRSGAVDVIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGSI 188

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SKC+ +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+RR+ SIK  D I GN+T
Sbjct: 189 NKSKCVAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRRIDSIKQGDQILGNRT 248

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+ KNK+A PFK  EFDIMY EGIS  G ++D+GV+  +VDKSG+WFS+K  RLGQGR
Sbjct: 249 RVKINKNKVAPPFKMAEFDIMYNEGISKVGNILDVGVREELVDKSGSWFSYKDTRLGQGR 308

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K FL++N+ IA  IE+ +R+   L
Sbjct: 309 ENAKQFLKDNMNIALEIENTIRKKHDL 335


>gi|110801858|ref|YP_698960.1| recombinase A [Clostridium perfringens SM101]
 gi|123047323|sp|Q0SSE7|RECA_CLOPS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|110682359|gb|ABG85729.1| recA protein [Clostridium perfringens SM101]
          Length = 352

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 212/327 (64%), Positives = 276/327 (84%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+E A+ QI++ +GKG++M+LG QG+    ++ VS+G L LDIALGIGG PKGRI+
Sbjct: 7   DKLKAIEMAMGQIEKQFGKGSVMKLGEQGA--PQMDAVSTGCLDLDIALGIGGVPKGRII 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A++QK GG  A++DAEHALD +YA++LGV++ +L++SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHVVAEAQKLGGAAAYIDAEHALDPVYAKRLGVNIDDLVVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ LVRSGA+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT +I
Sbjct: 125 EQALEITEALVRSGAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGTI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++S C+++FINQ+R K+G+MFG+PETT GG ALKFY+SVR+DIRR+ SIK  D ITGN+T
Sbjct: 185 NKSNCVVIFINQLREKVGIMFGNPETTPGGRALKFYASVRMDIRRIDSIKQGDGITGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFKQ EFDIMY EGIS  G ++D+GVK +IV KSGAWFS+   RLGQGR
Sbjct: 245 RVKIVKNKVAPPFKQAEFDIMYNEGISKEGNIVDVGVKENIVQKSGAWFSYGDIRLGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K +L+EN  +A +IE+ +R+   L
Sbjct: 305 ENAKQYLKENPSVALDIENQIREKYSL 331


>gi|18310655|ref|NP_562589.1| recombinase A [Clostridium perfringens str. 13]
 gi|110799772|ref|YP_696360.1| recombinase A [Clostridium perfringens ATCC 13124]
 gi|168211439|ref|ZP_02637064.1| recA protein [Clostridium perfringens B str. ATCC 3626]
 gi|168214494|ref|ZP_02640119.1| recA protein [Clostridium perfringens CPE str. F4969]
 gi|3219851|sp|P94666|RECA_CLOPE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123148691|sp|Q0TPT0|RECA_CLOP1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|1698591|gb|AAC45139.1| RecA protein [Clostridium perfringens]
 gi|18145336|dbj|BAB81379.1| recA protein [Clostridium perfringens str. 13]
 gi|110674419|gb|ABG83406.1| recA protein [Clostridium perfringens ATCC 13124]
 gi|170710594|gb|EDT22776.1| recA protein [Clostridium perfringens B str. ATCC 3626]
 gi|170714025|gb|EDT26207.1| recA protein [Clostridium perfringens CPE str. F4969]
          Length = 352

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 212/327 (64%), Positives = 276/327 (84%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+E A+ QI++ +GKG++M+LG QG+    ++ VS+G L LDIALGIGG PKGRI+
Sbjct: 7   DKLKAIEMAMGQIEKQFGKGSVMKLGEQGA--PQMDAVSTGCLDLDIALGIGGVPKGRII 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A++QK GG  A++DAEHALD +YA++LGV++ +L++SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHVVAEAQKLGGAAAYIDAEHALDPVYAKRLGVNIDDLVVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ LVRSGA+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT +I
Sbjct: 125 EQALEITEALVRSGAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGTI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++S C+++FINQ+R K+G+MFG+PETT GG ALKFY+SVR+DIRR+ SIK  D ITGN+T
Sbjct: 185 NKSNCVVIFINQLREKVGIMFGNPETTPGGRALKFYASVRMDIRRIDSIKQGDGITGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFKQ EFDIMY EGIS  G ++D+GVK +IV KSGAWFS+   RLGQGR
Sbjct: 245 RVKIVKNKVAPPFKQAEFDIMYNEGISKEGNIVDVGVKENIVQKSGAWFSYGDIRLGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K +L+EN  +A +IE+ +R+   L
Sbjct: 305 ENAKQYLKENPAVALDIENQIREKYSL 331


>gi|149394996|gb|ABR27352.1| RecA [Burkholderia sp. ESR73]
 gi|296803042|gb|ADH51597.1| DNA recombinase [Burkholderia contaminans]
 gi|296803050|gb|ADH51601.1| DNA recombinase [Burkholderia contaminans]
 gi|296803064|gb|ADH51608.1| DNA recombinase [Burkholderia contaminans]
 gi|296803098|gb|ADH51625.1| DNA recombinase [Burkholderia contaminans]
 gi|296803102|gb|ADH51627.1| DNA recombinase [Burkholderia contaminans]
 gi|296803108|gb|ADH51630.1| DNA recombinase [Burkholderia contaminans]
 gi|296803112|gb|ADH51632.1| DNA recombinase [Burkholderia contaminans]
          Length = 305

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/305 (70%), Positives = 266/305 (87%), Gaps = 1/305 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQN 334
            +R++
Sbjct: 300 RIRES 304


>gi|149394980|gb|ABR27344.1| RecA [Burkholderia cenocepacia]
          Length = 305

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/306 (70%), Positives = 266/306 (86%), Gaps = 1/306 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+
Sbjct: 1   SIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IV
Sbjct: 60  LQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM
Sbjct: 120 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 179

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI
Sbjct: 180 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 239

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
           +YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ 
Sbjct: 240 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 299

Query: 331 LRQNAG 336
           +R++ G
Sbjct: 300 IRESLG 305


>gi|71275910|ref|ZP_00652193.1| RecA bacterial DNA recombination protein [Xylella fastidiosa Dixon]
 gi|71899252|ref|ZP_00681414.1| RecA bacterial DNA recombination protein [Xylella fastidiosa Ann-1]
 gi|71163287|gb|EAO13006.1| RecA bacterial DNA recombination protein [Xylella fastidiosa Dixon]
 gi|71730985|gb|EAO33054.1| RecA bacterial DNA recombination protein [Xylella fastidiosa Ann-1]
          Length = 347

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 219/349 (62%), Positives = 285/349 (81%), Gaps = 13/349 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL  ALSQI++ +GKG++M++G +  + E +E + +GSL LD+ALGIGG PKGR+V
Sbjct: 4   NKKRALSVALSQIEKQFGKGSVMRMGDR--VIEAVEAIPTGSLMLDLALGIGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAQCQKKGGTAAFIDAEHALDPIYAGKLGVNVDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG++DI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSGSIDIMVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  +++FINQ+RMKIG+M    SPETTTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 182 KRSNTLVIFINQLRMKIGIMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELI++GV+A +V+K+GAW+S+ G+R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIEMGVEAKLVEKAGAWYSYGGERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           G++N++ +LREN  +A  +E+ LR+           EP   ++++ D+D
Sbjct: 302 GKDNARGYLRENPHLAAKLEADLREKF---------EPTELSREEGDED 341


>gi|94501705|ref|ZP_01308220.1| recA protein [Oceanobacter sp. RED65]
 gi|94426192|gb|EAT11185.1| recA protein [Oceanobacter sp. RED65]
          Length = 362

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/322 (67%), Positives = 270/322 (83%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+AALSQI+R +GKGAIM++G Q    E I  VS+GSL LDIALGIGG P GRIV
Sbjct: 4   NRQKALDAALSQIERQFGKGAIMKMGEQPR--EAIPSVSTGSLSLDIALGIGGLPFGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ L  +A++QK G T A VDAEHALD  YA KLGVDL +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTMCLSAMAEAQKDGKTVAIVDAEHALDPSYAEKLGVDLDSLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRS AVD+IV+DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT+++
Sbjct: 122 EQALEIVDSLVRSNAVDLIVVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTANV 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR G++K+ D + GN+T
Sbjct: 182 KNANCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGAVKNGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF IMY +GI+   E+IDLGVK  +VDKSGAW+++KG ++GQG+
Sbjct: 242 RVKVVKNKVAPPFKQAEFQIMYNQGINRQAEIIDLGVKLGLVDKSGAWYAYKGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N+ ++L+EN E+++ +E  +R
Sbjct: 302 ANACVYLQENPEVSKELEKQIR 323


>gi|149190611|ref|ZP_01868880.1| recombinase A [Vibrio shilonii AK1]
 gi|148835609|gb|EDL52577.1| recombinase A [Vibrio shilonii AK1]
          Length = 345

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 215/336 (63%), Positives = 277/336 (82%), Gaps = 4/336 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +QK G TCAF+DAEHALD IYA+KLGVD+ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPIYAKKLGVDIDSLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ E  I+YG+G + +GELIDLGVK  +V+K+GAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKQAETQILYGQGFNRYGELIDLGVKHKLVEKAGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
            N+  FLREN E A+ I++ LR+   L+  +L + P
Sbjct: 302 ANACKFLRENPEAAQTIDAKLREM--LLTPALEEAP 335


>gi|157827740|ref|YP_001496804.1| recombinase A [Rickettsia bellii OSU 85-389]
 gi|166220672|sp|A8GY17|RECA_RICB8 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|157803044|gb|ABV79767.1| recombinase A [Rickettsia bellii OSU 85-389]
          Length = 343

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/344 (65%), Positives = 288/344 (83%), Gaps = 3/344 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+ +DK KA+ AAL+QI++ YGKG++M+LG + ++   IE VS+GSLGLDIALGIGG PK
Sbjct: 1   MSNIDKEKAVAAALAQIEKSYGKGSVMKLGQRPNV--DIESVSTGSLGLDIALGIGGVPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA+KLGV++  L+ISQ
Sbjct: 59  GRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELIISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++    QARLMSQALRKL
Sbjct: 119 PDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ + 
Sbjct: 179 TASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEEVI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G+QT+VKVVKNK++ PFK  +FDIMYG GIS  GE+IDLGVK  I++KSG+WFS+   R+
Sbjct: 239 GSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIIEKSGSWFSYNSVRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD-SLLQEPAIN 349
           GQGREN K +L++N +I+  IE L+R+ +  V + +  QE  +N
Sbjct: 299 GQGRENVKQYLKDNPKISNEIEKLVREKSSKVTNINFEQEEEVN 342


>gi|153938095|ref|YP_001391702.1| recombinase A [Clostridium botulinum F str. Langeland]
 gi|152933991|gb|ABS39489.1| recA protein [Clostridium botulinum F str. Langeland]
 gi|295319730|gb|ADG00108.1| recA protein [Clostridium botulinum F str. 230613]
          Length = 352

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 220/332 (66%), Positives = 277/332 (83%), Gaps = 3/332 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KA+EAA+ QI++ +GKG+IM+LG + SI   +E +S+GSL LDIALGIGG P+GRI+
Sbjct: 8   EKLKAIEAAMGQIEKQFGKGSIMKLG-EDSILN-VESISTGSLDLDIALGIGGVPRGRII 65

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTT+ALH +A++QK GG  AF+DAEHALD  YAR LGVD+ NL++SQPDTG
Sbjct: 66  EIFGPESSGKTTVALHILAEAQKIGGAAAFIDAEHALDPSYARNLGVDIDNLIVSQPDTG 125

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ LVRSGAVD+IV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL  SI
Sbjct: 126 EQALEITEALVRSGAVDVIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGSI 185

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SKC+ +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+RR+ SIK  D I GN+T
Sbjct: 186 NKSKCVAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRRIDSIKQGDQILGNRT 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+ KNK+A PFK  EFDIMY EGIS  G ++D+GV+  +VDKSG+WFS+K  RLGQGR
Sbjct: 246 RVKINKNKVAPPFKMAEFDIMYNEGISKVGNILDVGVREELVDKSGSWFSYKDTRLGQGR 305

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL-VADS 341
           EN+K FL++N+ IA  IE+ +R+   L VAD+
Sbjct: 306 ENAKQFLKDNMNIALEIENTIRKKHDLPVADA 337


>gi|145300676|ref|YP_001143517.1| recombinase A [Aeromonas salmonicida subsp. salmonicida A449]
 gi|148887151|sp|P94190|RECA_AERS4 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|142853448|gb|ABO91769.1| RecA protein [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 353

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 221/353 (62%), Positives = 278/353 (78%), Gaps = 3/353 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LD+ALGIGG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDSKTM--DIEAISTGSLSLDVALGIGGLPCGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G  CAF+DAEHALD IYA KLGV++ +LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAEAQKKGKVCAFIDAEHALDPIYAAKLGVNVDDLLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS AVD+I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 122 EQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+ +FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+T
Sbjct: 182 KNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF I YG GIS  GEL+DLGVK  ++DK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVAPPFKQAEFQIFYGVGISKEGELVDLGVKHKLIDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N      EN  +A  +E+ LR+   L  D   ++P +   D+ + +     E
Sbjct: 302 ANVMKLFTENKVMAAEVEARLRELL-LSGDVPAEKPVVADADELEAESEQEFE 353


>gi|58582564|ref|YP_201580.1| recombinase A [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58427158|gb|AAW76195.1| RecA [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 373

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/326 (66%), Positives = 275/326 (84%), Gaps = 4/326 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AALSQI++ +GKG++M++G +  + E +EV+ +GSL LDIALG GG PKGR+V
Sbjct: 33  NKKRALAAALSQIEKQFGKGSVMRMGDR--VIEAVEVIPTGSLMLDIALGTGGLPKGRVV 90

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK GGT AF+DAEHALD +YA KLGV++ +LL+SQPDTG
Sbjct: 91  EIYGPESSGKTTLTLQAIAQCQKLGGTAAFIDAEHALDPVYAAKLGVNVDDLLLSQPDTG 150

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS +VDI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 151 EQALEIADMLVRSSSVDIVVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 210

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  ++VFINQ+RMKIGVM    SPE TTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 211 KRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 270

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELID+GV+A +V+K+GAW+S+  +R+GQ
Sbjct: 271 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVEKAGAWYSYGDERIGQ 330

Query: 309 GRENSKIFLRENIEIAENIESLLRQN 334
           G++N++ +LR+N ++A  +E+ LR+ 
Sbjct: 331 GKDNARTYLRDNPQVAVRLEAELREK 356


>gi|109453502|gb|ABG34231.1| RecA [Salmonella enterica]
 gi|109453504|gb|ABG34232.1| RecA [Salmonella enterica]
 gi|109453506|gb|ABG34233.1| RecA [Salmonella enterica]
 gi|109453508|gb|ABG34234.1| RecA [Salmonella enterica]
 gi|109453510|gb|ABG34235.1| RecA [Salmonella enterica]
 gi|109453512|gb|ABG34236.1| RecA [Salmonella enterica]
          Length = 353

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/323 (65%), Positives = 272/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN   A+ IE  +R+
Sbjct: 304 ANATTWLKENPATAKEIEKKVRE 326


>gi|309379707|emb|CBX21696.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 348

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 219/323 (67%), Positives = 274/323 (84%), Gaps = 3/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           DKSKAL AAL+QI++ +GKGAIM++ GSQ    E +EV+S+GSLGLD+ALG+GG P+GRI
Sbjct: 4   DKSKALAAALAQIEKSFGKGAIMKMDGSQQE--ENLEVISTGSLGLDLALGVGGLPRGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEI+GPESSGKTTL L  +AQ QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDT
Sbjct: 62  VEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSG +D++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  
Sbjct: 122 GEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGH 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR GSIK  + + GN+
Sbjct: 182 IKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNE 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            RVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+GVK  I++KSGAW+S+ G ++GQG
Sbjct: 242 NRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLR 332
           ++N +++L+EN E+A  I++ +R
Sbjct: 302 KDNVRVWLKENPEVANEIDAKIR 324


>gi|291618587|ref|YP_003521329.1| RecA [Pantoea ananatis LMG 20103]
 gi|291153617|gb|ADD78201.1| RecA [Pantoea ananatis LMG 20103]
          Length = 356

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 212/323 (65%), Positives = 272/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPE+SGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPEASGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+ FGEL+DLGVK  +++K+GAW+S+KG ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQIMYGEGINTFGELVDLGVKHKLIEKAGAWYSYKGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  FL+EN  +AE ++  LR+
Sbjct: 304 ANAGNFLKENAAVAEELDIKLRE 326


>gi|149394986|gb|ABR27347.1| RecA [Burkholderia cenocepacia]
          Length = 304

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/305 (70%), Positives = 265/305 (86%), Gaps = 1/305 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ 
Sbjct: 1   IMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEL 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVI
Sbjct: 60  QKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVI 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMF
Sbjct: 120 DSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMF 179

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+
Sbjct: 180 GNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDIL 239

Query: 272 YGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLL 331
           YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ +
Sbjct: 240 YGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRI 299

Query: 332 RQNAG 336
           R++ G
Sbjct: 300 RESLG 304


>gi|224825851|ref|ZP_03698955.1| recA protein [Lutiella nitroferrum 2002]
 gi|224602075|gb|EEG08254.1| recA protein [Lutiella nitroferrum 2002]
          Length = 351

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/327 (64%), Positives = 279/327 (85%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKS+AL AAL+QI++ +GKG+IM++ S   I E ++V+S+GSLGLD+ALG+GG P+GR+V
Sbjct: 7   DKSRALAAALAQIEKQFGKGSIMRM-SDNQITENLQVISTGSLGLDLALGVGGLPRGRVV 65

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  +A++QK GGTCA++DAE+ALD  YA+KLGV++++LLISQPDTG
Sbjct: 66  EIYGPESSGKTTLCLQVVAEAQKLGGTCAYIDAENALDPTYAQKLGVNVEDLLISQPDTG 125

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS  VD+IV+DSVAAL P+AEIEG+MG++  G+ ARLMSQALRKLT +I
Sbjct: 126 EQALEICDMLVRSSGVDVIVVDSVAALVPKAEIEGEMGDNHVGLHARLMSQALRKLTGNI 185

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G IK  + I GN+T
Sbjct: 186 KRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGGIKKGEEIIGNET 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF+Q  FDI+YGEGIS  GE+++LGV+   V+KSGAW+S+ GQ++GQG+
Sbjct: 246 RVKVVKNKVSPPFRQAGFDILYGEGISREGEIVELGVEHGFVEKSGAWYSYNGQKIGQGK 305

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           +N++++L++N  IA  IE  +R+  G+
Sbjct: 306 DNTRLWLKDNPAIAREIEGKIREAVGI 332


>gi|166712453|ref|ZP_02243660.1| recombinase A [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 344

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/325 (66%), Positives = 275/325 (84%), Gaps = 4/325 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AALSQI++ +GKG++M++G +  + E +EV+ +GSL LDIALG GG PKGR+V
Sbjct: 4   NKKRALSAALSQIEKQFGKGSVMRMGDR--VIEAVEVIPTGSLMLDIALGTGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAQCQKLGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS +VDI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSSSVDIVVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  ++VFINQ+RMKIGVM    SPE TTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 182 KRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELID+GV+A +V+K+GAW+S+  +R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVEKAGAWYSYGDERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333
           G++N++ +LR+N ++A  +E+ LR+
Sbjct: 302 GKDNARTYLRDNPQVAVRLEAELRE 326


>gi|168180717|ref|ZP_02615381.1| recA protein [Clostridium botulinum NCTC 2916]
 gi|226949757|ref|YP_002804848.1| recombinase A [Clostridium botulinum A2 str. Kyoto]
 gi|182668391|gb|EDT80370.1| recA protein [Clostridium botulinum NCTC 2916]
 gi|226841660|gb|ACO84326.1| recA protein [Clostridium botulinum A2 str. Kyoto]
          Length = 355

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/327 (66%), Positives = 273/327 (83%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KA+EAA+ QI++ +GKG+IM+LG + SI   +E +S+GSL LDIALGIGG P+GRI+
Sbjct: 11  EKLKAIEAAMGQIEKQFGKGSIMKLG-EDSILN-VESISTGSLDLDIALGIGGVPRGRII 68

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTT+ALH +A++QK GG  AF+DAEHALD  YAR LGVD+ NL++SQPDTG
Sbjct: 69  EIFGPESSGKTTVALHILAEAQKIGGAAAFIDAEHALDPSYARNLGVDIDNLIVSQPDTG 128

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ LVRSGAVD+IV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL  SI
Sbjct: 129 EQALEITEALVRSGAVDVIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGSI 188

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SKC+ +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+RR+ SIK  D I GN+T
Sbjct: 189 NKSKCVAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRRIDSIKQGDQILGNRT 248

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+ KNK+A PFK  EFDIMY EGIS  G ++D+GV+  +VDKSG+WFS+K  RLGQGR
Sbjct: 249 RVKINKNKVAPPFKMAEFDIMYNEGISKVGNILDVGVREELVDKSGSWFSYKDTRLGQGR 308

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K FL++N+ IA  IE+ +R+   L
Sbjct: 309 ENAKQFLKDNMNIALEIENTIRKKHDL 335


>gi|269140204|ref|YP_003296905.1| RecA/RadA recombinase [Edwardsiella tarda EIB202]
 gi|267985865|gb|ACY85694.1| RecA/RadA recombinase [Edwardsiella tarda EIB202]
 gi|304560035|gb|ADM42699.1| RecA [Edwardsiella tarda FL6-60]
          Length = 353

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/323 (66%), Positives = 270/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LD+ALGIGG P GR+V
Sbjct: 4   NKQRALAAALGQIEKQFGKGSIMRLGDTQTL--DIESISTGSLSLDVALGIGGLPMGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA++Q  G TCAF+DAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIFGPESSGKTTLTLSVIARAQAAGKTCAFIDAEHALDPIYAAKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVD+I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 122 EQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C++VFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK+ D + GN+T
Sbjct: 182 KNANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG GIS   ELIDLGVK  ++DKSGAW+S+ G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGAGISKESELIDLGVKHKLLDKSGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            NS  FL+EN  I+  +E  LR+
Sbjct: 302 ANSMKFLQENTTISAELEGKLRE 324


>gi|158320574|ref|YP_001513081.1| recA protein [Alkaliphilus oremlandii OhILAs]
 gi|158140773|gb|ABW19085.1| recA protein [Alkaliphilus oremlandii OhILAs]
          Length = 352

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 224/354 (63%), Positives = 279/354 (78%), Gaps = 2/354 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           ++K KAL+ ALSQI++ +GKG+IM+LG    +   +E VS+GS+GLD+ALGIGG PKGRI
Sbjct: 1   MEKKKALDMALSQIEKQFGKGSIMKLGEDAKL--NLESVSTGSIGLDVALGIGGIPKGRI 58

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT++LH IA++QK GG  AF+DAEHALD  YA+ LGVD++NL++SQPDT
Sbjct: 59  IEIYGPESSGKTTVSLHVIAETQKRGGIAAFIDAEHALDPSYAKNLGVDIENLIVSQPDT 118

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + LVRSGAVDIIV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL  S
Sbjct: 119 GEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLAGS 178

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S  I +FINQ+R KIGVMFG+PETTTGG ALKFY+SVRLD+R+V SIK  + + GN+
Sbjct: 179 ISKSNTIAIFINQLREKIGVMFGTPETTTGGRALKFYASVRLDVRKVDSIKQGNDVVGNR 238

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A+PFKQ EFDIMYGEGIS  G+++D+     IV KSGAW+S+   RLGQG
Sbjct: 239 TRVKVVKNKVAAPFKQAEFDIMYGEGISKAGDILDVAASLDIVTKSGAWYSYGEHRLGQG 298

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           REN K FL+EN EI+  IE+ +R+   L   S      I  K+D      +N E
Sbjct: 299 RENGKQFLKENPEISLEIENKIREYYNLPIQSGTNTDLIQAKNDVPDATEENEE 352


>gi|283835572|ref|ZP_06355313.1| protein RecA [Citrobacter youngae ATCC 29220]
 gi|291068782|gb|EFE06891.1| protein RecA [Citrobacter youngae ATCC 29220]
          Length = 354

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/323 (65%), Positives = 272/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN   A+ IE  LR+
Sbjct: 304 ANATNWLKENPATAKEIEKKLRE 326


>gi|54633816|gb|AAV36018.1| RecA [Burkholderia sp. KBC-2]
          Length = 308

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 213/297 (71%), Positives = 262/297 (88%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 3   EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFID 62

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AE
Sbjct: 63  AEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAE 122

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           IEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNA
Sbjct: 123 IEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNA 182

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+
Sbjct: 183 LKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEI 242

Query: 283 IDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 243 IDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIRESLGVVA 299


>gi|296803058|gb|ADH51605.1| DNA recombinase [Burkholderia cenocepacia]
 gi|296803106|gb|ADH51629.1| DNA recombinase [Burkholderia cenocepacia]
          Length = 304

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/305 (70%), Positives = 266/305 (87%), Gaps = 1/305 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQN 334
            +R++
Sbjct: 300 RIRES 304


>gi|30142196|emb|CAD83085.1| RecA protein [Burkholderia glumae]
          Length = 334

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 215/311 (69%), Positives = 268/311 (86%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AAL+QI++ +GKG   ++ +     + I+VVS+GSLGLDIALG+GG P+GR+VEIYGPES
Sbjct: 2   AALAQIEKQFGKGIDHEVSAMPRPRKYIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPES 61

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEIT
Sbjct: 62  SGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEIT 121

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C++
Sbjct: 122 DALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLV 181

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKN
Sbjct: 182 IFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKN 241

Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317
           K++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FL
Sbjct: 242 KVSPPFRESIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFL 301

Query: 318 RENIEIAENIE 328
           REN +IA  IE
Sbjct: 302 RENPDIAREIE 312


>gi|109453490|gb|ABG34225.1| RecA [Salmonella enterica subsp. indica]
 gi|109453492|gb|ABG34226.1| RecA [Salmonella enterica subsp. indica]
 gi|109453494|gb|ABG34227.1| RecA [Salmonella enterica subsp. indica]
 gi|109453496|gb|ABG34228.1| RecA [Salmonella enterica subsp. indica]
 gi|109453498|gb|ABG34229.1| RecA [Salmonella enterica subsp. indica]
 gi|109453500|gb|ABG34230.1| RecA [Salmonella enterica subsp. indica]
          Length = 353

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 210/323 (65%), Positives = 272/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN   A+ IE  +R+
Sbjct: 304 ANATTWLKENPTTAKEIEKKVRE 326


>gi|16761605|ref|NP_457222.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|16766135|ref|NP_461750.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29143089|ref|NP_806431.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|62181332|ref|YP_217749.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161615727|ref|YP_001589692.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|167994128|ref|ZP_02575220.1| protein RecA [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168235857|ref|ZP_02660915.1| protein RecA [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168245260|ref|ZP_02670192.1| protein RecA [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168262060|ref|ZP_02684033.1| protein RecA [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|168464049|ref|ZP_02697966.1| protein RecA [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|168820488|ref|ZP_02832488.1| protein RecA [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194446772|ref|YP_002042070.1| recombinase A [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194451484|ref|YP_002046789.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194736708|ref|YP_002115781.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197250628|ref|YP_002147725.1| recombinase A [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197263607|ref|ZP_03163681.1| protein RecA [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|198241828|ref|YP_002216800.1| recombinase A [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|200386699|ref|ZP_03213311.1| protein RecA [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|204928070|ref|ZP_03219270.1| protein RecA [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205353773|ref|YP_002227574.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207858093|ref|YP_002244744.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213028317|ref|ZP_03342764.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
 gi|213051937|ref|ZP_03344815.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
 gi|213426123|ref|ZP_03358873.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213579899|ref|ZP_03361725.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
 gi|213648097|ref|ZP_03378150.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi
           str. J185]
 gi|224584607|ref|YP_002638405.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|238909595|ref|ZP_04653432.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|289824465|ref|ZP_06544041.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|54039032|sp|P65978|RECA_SALTI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|54041792|sp|P65977|RECA_SALTY RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|76363339|sp|Q57KU4|RECA_SALCH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|189039605|sp|A9N0C5|RECA_SALPB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226723638|sp|B5F352|RECA_SALA4 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226726276|sp|B5FSY0|RECA_SALDC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226726295|sp|B5QV78|RECA_SALEP RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226726296|sp|B5RDF4|RECA_SALG2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238690630|sp|B4TF13|RECA_SALHS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238693603|sp|B4T3A0|RECA_SALNS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238693680|sp|B4TT06|RECA_SALSV RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|254790444|sp|C0PWM2|RECA_SALPC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|25300503|pir||AH0843 RecA protein [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16421374|gb|AAL21709.1| DNA strand exchange and recombination protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|16503906|emb|CAD05935.1| RecA protein [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29138722|gb|AAO70291.1| recA protein [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|62128965|gb|AAX66668.1| DNA strand exchange and recombination protein with proteiase and
           nuclease activity [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|109453380|gb|ABG34170.1| RecA [Salmonella enterica subsp. enterica]
 gi|109453382|gb|ABG34171.1| RecA [Salmonella enterica subsp. enterica]
 gi|109453384|gb|ABG34172.1| RecA [Salmonella enterica subsp. enterica]
 gi|109453386|gb|ABG34173.1| RecA [Salmonella enterica subsp. enterica]
 gi|109453388|gb|ABG34174.1| RecA [Salmonella enterica subsp. enterica]
 gi|109453390|gb|ABG34175.1| RecA [Salmonella enterica subsp. enterica]
 gi|109453392|gb|ABG34176.1| RecA [Salmonella enterica subsp. enterica]
 gi|109453394|gb|ABG34177.1| RecA [Salmonella enterica subsp. enterica]
 gi|109453396|gb|ABG34178.1| RecA [Salmonella enterica subsp. enterica]
 gi|109453398|gb|ABG34179.1| RecA [Salmonella enterica subsp. enterica]
 gi|109453400|gb|ABG34180.1| RecA [Salmonella enterica subsp. enterica]
 gi|161365091|gb|ABX68859.1| hypothetical protein SPAB_03518 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194405435|gb|ACF65657.1| protein RecA [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194409788|gb|ACF70007.1| protein RecA [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194712210|gb|ACF91431.1| protein RecA [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195633723|gb|EDX52137.1| protein RecA [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197214331|gb|ACH51728.1| protein RecA [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197241862|gb|EDY24482.1| protein RecA [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197290652|gb|EDY30006.1| protein RecA [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197936344|gb|ACH73677.1| protein RecA [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|199603797|gb|EDZ02342.1| protein RecA [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|204322392|gb|EDZ07589.1| protein RecA [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205273554|emb|CAR38541.1| Recombinase A [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205327960|gb|EDZ14724.1| protein RecA [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205335992|gb|EDZ22756.1| protein RecA [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205342838|gb|EDZ29602.1| protein RecA [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205349184|gb|EDZ35815.1| protein RecA [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|206709896|emb|CAR34249.1| Recombinase A [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224469134|gb|ACN46964.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261247965|emb|CBG25798.1| RecA protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267994946|gb|ACY89831.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301159389|emb|CBW18907.1| RecA protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312913847|dbj|BAJ37821.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|320087232|emb|CBY96997.1| Protein recA Recombinase A [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321223382|gb|EFX48448.1| RecA protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322614352|gb|EFY11283.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322621583|gb|EFY18436.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322624444|gb|EFY21277.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322628775|gb|EFY25558.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322633498|gb|EFY30240.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635926|gb|EFY32634.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322639634|gb|EFY36319.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322646817|gb|EFY43320.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322650585|gb|EFY46990.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322654803|gb|EFY51122.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322659023|gb|EFY55276.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322664410|gb|EFY60604.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322668341|gb|EFY64498.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322673679|gb|EFY69780.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322677740|gb|EFY73803.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322681430|gb|EFY77462.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322683832|gb|EFY79842.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|322715815|gb|EFZ07386.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323131180|gb|ADX18610.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323193779|gb|EFZ78982.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323200249|gb|EFZ85331.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323203248|gb|EFZ88277.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323205505|gb|EFZ90470.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323212793|gb|EFZ97604.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323216319|gb|EGA01046.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323221067|gb|EGA05498.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323226888|gb|EGA11070.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323230828|gb|EGA14946.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323234821|gb|EGA18907.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323238860|gb|EGA22910.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323241560|gb|EGA25591.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323248293|gb|EGA32229.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323251123|gb|EGA34996.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323255838|gb|EGA39586.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323263141|gb|EGA46679.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323264354|gb|EGA47860.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323271181|gb|EGA54609.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|326624559|gb|EGE30904.1| recombinase A [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
 gi|326628881|gb|EGE35224.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 353

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 210/323 (65%), Positives = 272/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN   A+ IE  +R+
Sbjct: 304 ANATTWLKENPATAKEIEKRVRE 326


>gi|168184610|ref|ZP_02619274.1| recA protein [Clostridium botulinum Bf]
 gi|237795840|ref|YP_002863392.1| recombinase A [Clostridium botulinum Ba4 str. 657]
 gi|182672301|gb|EDT84262.1| recA protein [Clostridium botulinum Bf]
 gi|229261898|gb|ACQ52931.1| recA protein [Clostridium botulinum Ba4 str. 657]
 gi|322806670|emb|CBZ04239.1| reca protein [Clostridium botulinum H04402 065]
          Length = 355

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/327 (66%), Positives = 273/327 (83%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KA+EAA+ QI++ +GKG+IM+LG + SI   +E +S+GSL LDIALGIGG P+GRI+
Sbjct: 11  EKLKAIEAAMGQIEKQFGKGSIMKLG-EDSILN-VESISTGSLDLDIALGIGGVPRGRII 68

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTT+ALH +A++QK GG  AF+DAEHALD  YAR LGVD+ NL++SQPDTG
Sbjct: 69  EIFGPESSGKTTVALHILAEAQKIGGAAAFIDAEHALDPSYARNLGVDIDNLIVSQPDTG 128

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ LVRSGAVD+IV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL  SI
Sbjct: 129 EQALEITEALVRSGAVDVIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGSI 188

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SKC+ +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+RR+ SIK  D I GN+T
Sbjct: 189 NKSKCVAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRRIDSIKQGDQILGNRT 248

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+ KNK+A PFK  EFDIMY EGIS  G ++D+GV+  +VDKSG+WFS+K  RLGQGR
Sbjct: 249 RVKINKNKVAPPFKMAEFDIMYNEGISKVGNILDVGVREELVDKSGSWFSYKDTRLGQGR 308

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K FL++N+ IA  IE+ +R+   L
Sbjct: 309 ENAKQFLKDNMNIALEIENTIRKKHDL 335


>gi|296803062|gb|ADH51607.1| DNA recombinase [Burkholderia contaminans]
          Length = 305

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/306 (70%), Positives = 266/306 (86%), Gaps = 1/306 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+
Sbjct: 1   SIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IV
Sbjct: 60  LQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM
Sbjct: 120 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 179

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI
Sbjct: 180 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 239

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
           +YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ 
Sbjct: 240 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 299

Query: 331 LRQNAG 336
           +R++ G
Sbjct: 300 IRESLG 305


>gi|21231175|ref|NP_637092.1| recombinase A [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66768817|ref|YP_243579.1| recombinase A [Xanthomonas campestris pv. campestris str. 8004]
 gi|188991932|ref|YP_001903942.1| recombinase A [Xanthomonas campestris pv. campestris str. B100]
 gi|2500097|sp|Q60101|RECA_XANCP RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|76363348|sp|Q4UTR4|RECA_XANC8 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|229470328|sp|B0RTY3|RECA_XANCB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|15150333|gb|AAK85398.1|AF399933_2 RecA [Xanthomonas campestris]
 gi|1322036|gb|AAC44078.1| RecA [Xanthomonas campestris pv. campestris]
 gi|21112815|gb|AAM41016.1| RecA protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66574149|gb|AAY49559.1| RecA protein [Xanthomonas campestris pv. campestris str. 8004]
 gi|167733692|emb|CAP51897.1| RecA protein [Xanthomonas campestris pv. campestris]
          Length = 343

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/325 (67%), Positives = 276/325 (84%), Gaps = 4/325 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AALSQI++ +GKG++M++G +  + E +EV+ +GSL LDIALGIGG PKGR+V
Sbjct: 4   NKKRALSAALSQIEKQFGKGSVMRMGDR--VIEAVEVIPTGSLMLDIALGIGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAECQKLGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS +VDI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSSSVDIVVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  ++VFINQ+RMKIGVM    SPE TTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 182 KRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELID+GV+A +VDK+GAW+S+  +R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQVITEILYGEGISREGELIDMGVEAKLVDKAGAWYSYGDERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333
           G++N++ +LR+N ++A  +E+ LR+
Sbjct: 302 GKDNARGYLRDNPQVAIKLEAELRE 326


>gi|84624450|ref|YP_451822.1| recombinase A [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188575921|ref|YP_001912850.1| recombinase A [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|62296941|sp|O30633|RECA_XANOR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123739085|sp|Q2P1M9|RECA_XANOM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238689464|sp|B2SUC8|RECA_XANOP RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|15150329|gb|AAK85395.1|AF399932_2 RecA [Xanthomonas oryzae]
 gi|84368390|dbj|BAE69548.1| RecA protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188520373|gb|ACD58318.1| protein RecA [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 344

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/325 (66%), Positives = 275/325 (84%), Gaps = 4/325 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AALSQI++ +GKG++M++G +  + E +EV+ +GSL LDIALG GG PKGR+V
Sbjct: 4   NKKRALAAALSQIEKQFGKGSVMRMGDR--VIEAVEVIPTGSLMLDIALGTGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK GGT AF+DAEHALD +YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAQCQKLGGTAAFIDAEHALDPVYAAKLGVNVDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS +VDI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSSSVDIVVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  ++VFINQ+RMKIGVM    SPE TTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 182 KRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELID+GV+A +V+K+GAW+S+  +R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVEKAGAWYSYGDERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333
           G++N++ +LR+N ++A  +E+ LR+
Sbjct: 302 GKDNARTYLRDNPQVAVRLEAELRE 326


>gi|109453472|gb|ABG34216.1| RecA [Salmonella enterica subsp. houtenae]
 gi|109453474|gb|ABG34217.1| RecA [Salmonella enterica subsp. houtenae]
 gi|109453488|gb|ABG34224.1| RecA [Salmonella enterica subsp. houtenae]
          Length = 353

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 210/323 (65%), Positives = 272/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN   A+ IE  +R+
Sbjct: 304 ANATTWLKENPSTAKEIEKKVRE 326


>gi|146328886|ref|YP_001209208.1| DNA recombination protein RecA [Dichelobacter nodosus VCS1703A]
 gi|166220643|sp|A5EW90|RECA_DICNV RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|146232356|gb|ABQ13334.1| DNA recombination protein RecA [Dichelobacter nodosus VCS1703A]
          Length = 350

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 212/323 (65%), Positives = 274/323 (84%), Gaps = 1/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL A L+Q+ + +GKG +M+LG Q +  + I+ +S+GSL LDIALGIGG PKGRIV
Sbjct: 4   EQKKALTAVLTQLDKQFGKGTVMRLGEQVAAHD-IQAISTGSLTLDIALGIGGLPKGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ LH IA++QK GGT AF+DAEHALD IYARKLGV+  +L ++QPDTG
Sbjct: 63  EIYGPESSGKTTMMLHVIAEAQKNGGTAAFIDAEHALDPIYARKLGVNTDDLYVTQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGA D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT +I
Sbjct: 123 EQALEICDALVRSGAFDVIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+  ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIK+ D + GN+T
Sbjct: 183 KRANTLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRIGSIKEGDEVLGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDI+YG+G+S  GE+I L V A I+ KSGAW+S++ +++GQG+
Sbjct: 243 RVKVVKNKVAPPFKQAEFDILYGQGVSREGEIIQLAVNADIMQKSGAWYSYRDEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           E  +++L+E+ ++A+ IE+ +R+
Sbjct: 303 EKVRLYLKEHPDVAQEIETKIRE 325


>gi|328675288|gb|AEB27963.1| RecA protein [Francisella cf. novicida 3523]
          Length = 359

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/317 (68%), Positives = 272/317 (85%), Gaps = 1/317 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KALE+ALSQI++ +GKG+IM+LG Q ++ + I+V+ SG + LD+ALGIGG+PKGRI+E
Sbjct: 3   KEKALESALSQIEKQFGKGSIMRLGDQETVHD-IDVIPSGIIALDVALGIGGYPKGRIIE 61

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYG ESSGKTTL L  IAQ QK GGT AFVDAEHALD  YA+ LGVD+ NL++SQPDTGE
Sbjct: 62  IYGHESSGKTTLTLLAIAQCQKQGGTAAFVDAEHALDPKYAKLLGVDVDNLIVSQPDTGE 121

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DMLVRSG VDI+VIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT++I 
Sbjct: 122 QALEIADMLVRSGGVDIVVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIK 181

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           RS  +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRL++R+ GSIKD   ++GN+ +
Sbjct: 182 RSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLEVRKGGSIKDGIDVSGNEIK 241

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNK+A PFKQ +F+++YGEGIS   ELIDLG K +I++KSGAW+S+KG+++GQG+E
Sbjct: 242 VKIVKNKVAPPFKQADFELIYGEGISLEAELIDLGAKYNIIEKSGAWYSYKGKKIGQGKE 301

Query: 312 NSKIFLRENIEIAENIE 328
            SK +L+ENI   + IE
Sbjct: 302 KSKEYLKENIAERDEIE 318


>gi|237729653|ref|ZP_04560134.1| RecA [Citrobacter sp. 30_2]
 gi|226908259|gb|EEH94177.1| RecA [Citrobacter sp. 30_2]
          Length = 354

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/323 (65%), Positives = 272/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN   A+ IE  LR+
Sbjct: 304 ANATNWLKENPATAKEIEKKLRE 326


>gi|109453464|gb|ABG34212.1| RecA [Salmonella enterica subsp. houtenae]
 gi|109453466|gb|ABG34213.1| RecA [Salmonella enterica subsp. houtenae]
 gi|109453468|gb|ABG34214.1| RecA [Salmonella enterica subsp. houtenae]
 gi|109453470|gb|ABG34215.1| RecA [Salmonella enterica subsp. houtenae]
 gi|109453476|gb|ABG34218.1| RecA [Salmonella enterica subsp. houtenae]
 gi|109453478|gb|ABG34219.1| RecA [Salmonella enterica subsp. houtenae]
 gi|109453480|gb|ABG34220.1| RecA [Salmonella enterica subsp. houtenae]
 gi|109453482|gb|ABG34221.1| RecA [Salmonella enterica subsp. houtenae]
 gi|109453484|gb|ABG34222.1| RecA [Salmonella enterica subsp. houtenae]
 gi|109453486|gb|ABG34223.1| RecA [Salmonella enterica subsp. houtenae]
          Length = 353

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 210/323 (65%), Positives = 272/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN   A+ IE  +R+
Sbjct: 304 ANATTWLKENPATAKEIEKKVRE 326


>gi|266895|sp|Q01953|RECA_PSEFL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|151530|gb|AAA25980.1| putative [Pseudomonas fluorescens]
          Length = 352

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 222/353 (62%), Positives = 278/353 (78%), Gaps = 10/353 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE+IDLGV    V+KSGAW+++ G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            NS  FL +N +I   +E  +R       D LL  PA + K  A+++  + VE
Sbjct: 302 ANSAKFLADNPDIVATLEKQIR-------DKLLT-PAPDVKAAANREPVEEVE 346


>gi|167550335|ref|ZP_02344092.1| protein RecA [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|168230885|ref|ZP_02655943.1| protein RecA [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|194469905|ref|ZP_03075889.1| protein RecA [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194456269|gb|EDX45108.1| protein RecA [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|205324866|gb|EDZ12705.1| protein RecA [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205334494|gb|EDZ21258.1| protein RecA [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
          Length = 353

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 210/323 (65%), Positives = 272/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN   A+ IE  +R+
Sbjct: 304 ANATTWLKENPATAKEIEKRVRE 326


>gi|109453454|gb|ABG34207.1| RecA [Salmonella enterica subsp. diarizonae]
          Length = 353

 Score =  454 bits (1169), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 210/323 (65%), Positives = 272/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN   A+ IE  +R+
Sbjct: 304 ANATTWLKENPATAKEIEKKVRE 326


>gi|148380359|ref|YP_001254900.1| recA protein [Clostridium botulinum A str. ATCC 3502]
 gi|153932434|ref|YP_001384579.1| recombinase A [Clostridium botulinum A str. ATCC 19397]
 gi|153937504|ref|YP_001388095.1| recombinase A [Clostridium botulinum A str. Hall]
 gi|148289843|emb|CAL83951.1| RecA protein [Clostridium botulinum A str. ATCC 3502]
 gi|152928478|gb|ABS33978.1| recA protein [Clostridium botulinum A str. ATCC 19397]
 gi|152933418|gb|ABS38917.1| recA protein [Clostridium botulinum A str. Hall]
          Length = 352

 Score =  454 bits (1169), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/327 (66%), Positives = 273/327 (83%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KA+EAA+ QI++ +GKG+IM+LG + SI   +E +S+GSL LDIALGIGG P+GRI+
Sbjct: 8   EKLKAIEAAMGQIEKQFGKGSIMKLG-EDSILN-VESISTGSLDLDIALGIGGVPRGRII 65

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTT+ALH +A++QK GG  AF+DAEHALD  YAR LGVD+ NL++SQPDTG
Sbjct: 66  EIFGPESSGKTTVALHILAEAQKIGGAAAFIDAEHALDPSYARNLGVDIDNLIVSQPDTG 125

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ LVRSGAVD+IV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL  SI
Sbjct: 126 EQALEITEALVRSGAVDVIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGSI 185

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SKC+ +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+RR+ SIK  D I GN+T
Sbjct: 186 NKSKCVAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRRIDSIKQGDQILGNRT 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+ KNK+A PFK  EFDIMY EGIS  G ++D+GV+  +VDKSG+WFS+K  RLGQGR
Sbjct: 246 RVKINKNKVAPPFKMAEFDIMYNEGISKVGNILDVGVREELVDKSGSWFSYKDTRLGQGR 305

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K FL++N+ IA  IE+ +R+   L
Sbjct: 306 ENAKQFLKDNMNIALEIENTIRKKHDL 332


>gi|109453402|gb|ABG34181.1| RecA [Salmonella enterica subsp. salamae]
 gi|109453404|gb|ABG34182.1| RecA [Salmonella enterica subsp. salamae]
 gi|109453406|gb|ABG34183.1| RecA [Salmonella enterica subsp. salamae]
 gi|109453408|gb|ABG34184.1| RecA [Salmonella enterica subsp. salamae]
 gi|109453410|gb|ABG34185.1| RecA [Salmonella enterica subsp. salamae]
 gi|109453412|gb|ABG34186.1| RecA [Salmonella enterica subsp. salamae]
 gi|109453414|gb|ABG34187.1| RecA [Salmonella enterica subsp. salamae]
 gi|109453416|gb|ABG34188.1| RecA [Salmonella enterica subsp. salamae]
 gi|109453418|gb|ABG34189.1| RecA [Salmonella enterica subsp. salamae]
 gi|109453420|gb|ABG34190.1| RecA [Salmonella enterica subsp. salamae]
 gi|109453442|gb|ABG34201.1| RecA [Salmonella enterica subsp. diarizonae]
 gi|109453444|gb|ABG34202.1| RecA [Salmonella enterica subsp. diarizonae]
 gi|109453446|gb|ABG34203.1| RecA [Salmonella enterica subsp. diarizonae]
 gi|109453448|gb|ABG34204.1| RecA [Salmonella enterica subsp. diarizonae]
 gi|109453450|gb|ABG34205.1| RecA [Salmonella enterica subsp. diarizonae]
 gi|109453456|gb|ABG34208.1| RecA [Salmonella enterica subsp. diarizonae]
 gi|109453458|gb|ABG34209.1| RecA [Salmonella enterica subsp. diarizonae]
 gi|109453460|gb|ABG34210.1| RecA [Salmonella enterica subsp. diarizonae]
 gi|109453462|gb|ABG34211.1| RecA [Salmonella enterica subsp. diarizonae]
          Length = 353

 Score =  454 bits (1169), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 210/323 (65%), Positives = 272/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN   A+ IE  +R+
Sbjct: 304 ANATTWLKENPATAKEIEKKVRE 326


>gi|238921102|ref|YP_002934617.1| recombinase A [Edwardsiella ictaluri 93-146]
 gi|259563335|sp|C5BGH6|RECA_EDWI9 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238870671|gb|ACR70382.1| protein RecA, putative [Edwardsiella ictaluri 93-146]
          Length = 353

 Score =  454 bits (1169), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/323 (67%), Positives = 269/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LD+ALGIGG P GRIV
Sbjct: 4   NKQRALAAALGQIEKQFGKGSIMRLGDTQTL--DIESISTGSLSLDVALGIGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA +Q  G TCAF+DAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIFGPESSGKTTLTLSVIACAQAAGKTCAFIDAEHALDPIYAAKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVD+I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 122 EQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C++VFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK+ D + GN+T
Sbjct: 182 KNANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG GIS   ELIDLGVK  ++DKSGAW+S+ G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGAGISKESELIDLGVKHKLLDKSGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            NS  FL+EN  I+  +E  LR+
Sbjct: 302 ANSMKFLQENTTISAELEGKLRE 324


>gi|146312815|ref|YP_001177889.1| recombinase A [Enterobacter sp. 638]
 gi|166918711|sp|A4WDQ8|RECA_ENT38 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|145319691|gb|ABP61838.1| RecA protein [Enterobacter sp. 638]
          Length = 352

 Score =  454 bits (1169), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/323 (65%), Positives = 272/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GR+V
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGDNVIGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+FFGEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFFGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN   A+ IE  +R+
Sbjct: 304 ANAISWLKENPAAAKEIEKKVRE 326


>gi|92112756|ref|YP_572684.1| recA protein [Chromohalobacter salexigens DSM 3043]
 gi|123084204|sp|Q1QZX3|RECA_CHRSD RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|91795846|gb|ABE57985.1| RecA protein [Chromohalobacter salexigens DSM 3043]
          Length = 352

 Score =  454 bits (1169), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 213/322 (66%), Positives = 266/322 (82%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++SKAL AALSQI+R +GKGA+M+LG    +      +S+GSLGLDIALG+GG P GR+V
Sbjct: 6   NRSKALNAALSQIERQFGKGAVMRLGDTPRV--ATPAISTGSLGLDIALGVGGLPMGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTT+ L  IAQ QK G TCAF+DAEHALD  YA KLGV+L +LL+SQPDTG
Sbjct: 64  EIFGPESSGKTTMTLSVIAQGQKQGKTCAFIDAEHALDPTYAEKLGVNLDDLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG VD+IV+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T +I
Sbjct: 124 EQALEICDMLVRSGGVDVIVVDSVAALTPRAEIEGEMGDSHVGLQARLMSQALRKVTGNI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++F+NQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR GS+K  D   GN+T
Sbjct: 184 KNANCMVMFVNQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKQGDEAIGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE++D+GV+  +VDK+GAW+S++G ++GQG+
Sbjct: 244 RVKVVKNKVAPPFRQAEFQILYGKGIYHAGEVVDIGVQQGLVDKAGAWYSYQGNKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N+  FL +N  I E IE+ +R
Sbjct: 304 ANAAQFLEDNPAIMEEIENEIR 325


>gi|161502126|ref|YP_001569238.1| recombinase A [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160863473|gb|ABX20096.1| hypothetical protein SARI_00143 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 358

 Score =  454 bits (1169), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 210/323 (65%), Positives = 272/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 11  NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 68

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 69  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 128

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 129 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 188

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 189 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 248

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 249 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 308

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN   A+ IE  +R+
Sbjct: 309 ANATTWLKENPATAKEIEKKVRE 331


>gi|149394982|gb|ABR27345.1| RecA [Burkholderia sp. ESR92]
          Length = 305

 Score =  454 bits (1169), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 215/304 (70%), Positives = 265/304 (87%), Gaps = 1/304 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+
Sbjct: 1   SIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IV
Sbjct: 60  LQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM
Sbjct: 120 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 179

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI
Sbjct: 180 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 239

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
           +YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ 
Sbjct: 240 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 299

Query: 331 LRQN 334
           +R++
Sbjct: 300 IRES 303


>gi|254479108|ref|ZP_05092460.1| protein RecA [Carboxydibrachium pacificum DSM 12653]
 gi|214034957|gb|EEB75679.1| protein RecA [Carboxydibrachium pacificum DSM 12653]
          Length = 341

 Score =  454 bits (1169), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/338 (64%), Positives = 277/338 (81%), Gaps = 2/338 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           +++K KALE A+SQI+R +GKGAIM+LG    +   +EV+ +GSL LDIALG+GG P+GR
Sbjct: 1   MIEKQKALEMAISQIERQFGKGAIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EI+GPESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGV++ +LL++QPD
Sbjct: 59  IIEIFGPESSGKTTLALHMIAEAQKIGGTGAFIDAEHALDPVYAKNLGVNIDDLLVAQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL  
Sbjct: 119 TGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLAG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
             S+SK I+VFINQ+R K+GVMFG+PETT GG ALKFY+++RLD+R+V +IK  + I G+
Sbjct: 179 VTSKSKSIVVFINQLREKVGVMFGNPETTPGGRALKFYATIRLDVRKVDNIKQGNEIVGS 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++DLG    I++KSG+W+S+K  +LGQ
Sbjct: 239 RTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILDLGTALDIIEKSGSWYSYKDIKLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           GREN+K FL+EN EIAE IE  +R+N  L  + +   P
Sbjct: 299 GRENAKQFLKENKEIAEEIERKIRENFNLAYNKIKSAP 336


>gi|109453422|gb|ABG34191.1| RecA [Salmonella enterica subsp. arizonae]
 gi|109453424|gb|ABG34192.1| RecA [Salmonella enterica subsp. arizonae]
 gi|109453426|gb|ABG34193.1| RecA [Salmonella enterica subsp. arizonae]
 gi|109453428|gb|ABG34194.1| RecA [Salmonella enterica subsp. arizonae]
 gi|109453430|gb|ABG34195.1| RecA [Salmonella enterica subsp. arizonae]
 gi|109453432|gb|ABG34196.1| RecA [Salmonella enterica subsp. arizonae]
 gi|109453434|gb|ABG34197.1| RecA [Salmonella enterica subsp. arizonae]
 gi|109453436|gb|ABG34198.1| RecA [Salmonella enterica subsp. arizonae]
 gi|109453438|gb|ABG34199.1| RecA [Salmonella enterica subsp. arizonae]
 gi|109453440|gb|ABG34200.1| RecA [Salmonella enterica subsp. arizonae]
          Length = 353

 Score =  454 bits (1169), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 210/323 (65%), Positives = 272/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN   A+ IE  +R+
Sbjct: 304 ANATTWLKENPATAKEIEKKVRE 326


>gi|308187886|ref|YP_003932017.1| Protein recA (Recombinase A) [Pantoea vagans C9-1]
 gi|308058396|gb|ADO10568.1| Protein recA (Recombinase A) [Pantoea vagans C9-1]
          Length = 356

 Score =  454 bits (1169), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/323 (65%), Positives = 271/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD++NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIASAQRKGKTCAFIDAEHALDPVYAKKLGVDIENLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+ FGEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQIMYGEGINTFGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  FL+EN  +A  I+  LR+
Sbjct: 304 SNAGNFLKENAAVANEIDLKLRE 326


>gi|118442927|ref|YP_878196.1| recombinase A [Clostridium novyi NT]
 gi|166220640|sp|A0Q0P4|RECA_CLONN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|118133383|gb|ABK60427.1| recA protein [Clostridium novyi NT]
          Length = 350

 Score =  454 bits (1169), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 214/348 (61%), Positives = 278/348 (79%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AA++QI++ +GKG++M+LG +  +   +E +S+GSL LDIALGIGG P+GRI+
Sbjct: 4   EKMKALQAAITQIEKQFGKGSVMKLGEEHVL--NVEAISTGSLSLDIALGIGGIPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTT+ALH IA++QK+GGT AF+DAEHALD +YA+ LGVD+ NL++SQPDTG
Sbjct: 62  EIFGPESSGKTTVALHIIAEAQKSGGTAAFIDAEHALDPVYAKALGVDIDNLIVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+D+IV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT SI
Sbjct: 122 EQALEICEALVRSGAIDVIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SKC  +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+R++ +IK  D   G++T
Sbjct: 182 NKSKCATIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRKIETIKQGDEFLGSRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDIMYG GISF G ++D+GV   I+ KSG+WFS+   RLGQGR
Sbjct: 242 RVKVVKNKVAPPFKQAEFDIMYGTGISFEGNVLDVGVDNEIIQKSGSWFSYNDTRLGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           EN K FLREN  I   +E+ +R+   L   +         KD+  K++
Sbjct: 302 ENVKQFLRENPSILLEVENKIREKHNLKTRNTADSKVTGAKDEKSKEE 349


>gi|283786754|ref|YP_003366619.1| RecA protein (recombinase A) [Citrobacter rodentium ICC168]
 gi|282950208|emb|CBG89844.1| RecA protein (recombinase A) [Citrobacter rodentium ICC168]
          Length = 353

 Score =  454 bits (1169), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 210/323 (65%), Positives = 272/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN   A+ IE  +R+
Sbjct: 304 ANATTWLKENPATAKEIEKKVRE 326


>gi|296837449|gb|ADH59583.1| DNA recombinase [Burkholderia vietnamiensis]
          Length = 304

 Score =  454 bits (1169), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 215/304 (70%), Positives = 266/304 (87%), Gaps = 1/304 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+
Sbjct: 1   SIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IV
Sbjct: 60  LQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM
Sbjct: 120 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 179

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI
Sbjct: 180 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 239

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
           +YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ 
Sbjct: 240 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 299

Query: 331 LRQN 334
           +R++
Sbjct: 300 IRES 303


>gi|54310166|ref|YP_131186.1| recombinase A [Photobacterium profundum SS9]
 gi|46914607|emb|CAG21384.1| putative RecA protein [Photobacterium profundum SS9]
          Length = 356

 Score =  454 bits (1169), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/322 (67%), Positives = 265/322 (82%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   IE VS+GSL LDIALG GG P GRIV
Sbjct: 8   NKQKALAAALGQIEKQFGKGSIMRLGDNKTM--DIETVSTGSLALDIALGAGGLPMGRIV 65

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +QK G TCAF+DAEHALD IYA+KLGVD+  LL SQPDTG
Sbjct: 66  EIYGPESSGKTTLTLEVIASAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLCSQPDTG 125

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 126 EQALEIVDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 185

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+T
Sbjct: 186 KNANCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNET 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +V+K+GAW+S+KG ++GQG+
Sbjct: 246 RIKVVKNKIAAPFKQAETQILYGQGFNRNGELIDLGVKHKLVEKAGAWYSYKGNKIGQGK 305

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            NS   L EN  IAE IE LLR
Sbjct: 306 ANSCKHLVENPAIAEEIEKLLR 327


>gi|253578515|ref|ZP_04855787.1| RecA protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850833|gb|EES78791.1| RecA protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 354

 Score =  454 bits (1169), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 214/347 (61%), Positives = 278/347 (80%), Gaps = 3/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALEAAL QI++ YGKG++M+LG  G+  + +E V +GSL LDIALG+GG PKGRI+
Sbjct: 5   EKQKALEAALGQIEKHYGKGSVMKLGESGANMQ-VETVPTGSLSLDIALGVGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YA+ +GVD+ NL ISQPD G
Sbjct: 64  EIYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+GDMG+S  G+QARLMSQALRKLT+ I
Sbjct: 124 EQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKLTAVI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S C+++FINQ+R K+GVMFG+PETTTGG ALKFYSS+R+D+RRV ++K    + GN T
Sbjct: 184 SKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYSSIRMDVRRVETLKQGGEMVGNHT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PFKQ EFDIM+G GIS  G+++DL  +  IV+KSGAW+++ G ++GQGR
Sbjct: 244 RIKVVKNKVAPPFKQAEFDIMFGTGISKEGDILDLAAECGIVNKSGAWYAYNGDKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ--EPAINTKDDAD 355
           EN+KIFL+E+ +I + IE  +R +  L+ D   Q  EP   T D  D
Sbjct: 304 ENAKIFLKEHPDICDEIEKQVRIHYHLLPDEEGQAKEPVPATGDAPD 350


>gi|227824639|ref|ZP_03989471.1| recA protein [Acidaminococcus sp. D21]
 gi|226905138|gb|EEH91056.1| recA protein [Acidaminococcus sp. D21]
          Length = 352

 Score =  454 bits (1169), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 222/329 (67%), Positives = 273/329 (82%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AA+ QI++ +GKG+IM+LG+  +    IE + +G+L LDIALG+GG P+GRI+
Sbjct: 4   EKGKALDAAVKQIEKDFGKGSIMKLGAASAKMN-IETIPTGALSLDIALGVGGIPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA++QK GG  AF+DAEHALD  YAR LGVD+ NLLISQPDTG
Sbjct: 63  EIYGPESSGKTTVALHMIAEAQKRGGYAAFIDAEHALDPEYARHLGVDIDNLLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGA+DIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  I
Sbjct: 123 EQALEICDALVRSGAIDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGII 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S+   VFINQ+R K+GVMFG+PETTTGG ALKFYS+VR+D+RR+ S+K  + I GN+T
Sbjct: 183 SKSRTATVFINQIREKVGVMFGNPETTTGGRALKFYSTVRMDVRRIESLKSGNDIIGNRT 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDIMYGEGIS  G L+DLGV  +IV KSGAW+S+  +R+GQGR
Sbjct: 243 RVKVVKNKVAPPFKQAEFDIMYGEGISHEGCLVDLGVLYNIVGKSGAWYSYGDERIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           EN+K FL+ + E+A  IE+ +R+ AGL A
Sbjct: 303 ENTKEFLKNHPEMAFEIENRIREAAGLTA 331


>gi|24212187|sp|Q8RA55|RECA_THETN RecName: Full=Protein RecA; AltName: Full=Recombinase A
          Length = 342

 Score =  454 bits (1168), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/338 (64%), Positives = 277/338 (81%), Gaps = 2/338 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           +++K KALE A+SQI+R +GKGAIM+LG    +   +EV+ +GSL LDIALG+GG P+GR
Sbjct: 2   MIEKQKALEMAISQIERQFGKGAIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EI+GPESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGV++ +LL++QPD
Sbjct: 60  IIEIFGPESSGKTTLALHMIAEAQKIGGTGAFIDAEHALDPVYAKNLGVNIDDLLVAQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL  
Sbjct: 120 TGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLAG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
             S+SK I+VFINQ+R K+GVMFG+PETT GG ALKFY+++RLD+R+V +IK  + I G+
Sbjct: 180 VTSKSKSIVVFINQLREKVGVMFGNPETTPGGRALKFYATIRLDVRKVDNIKQGNEIVGS 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++DLG    I++KSG+W+S+K  +LGQ
Sbjct: 240 RTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILDLGTALDIIEKSGSWYSYKDIKLGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           GREN+K FL+EN EIAE IE  +R+N  L  + +   P
Sbjct: 300 GRENAKQFLKENKEIAEEIERKIRENFNLAYNKIKSAP 337


>gi|56414781|ref|YP_151856.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197363709|ref|YP_002143346.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|76363340|sp|Q5PF15|RECA_SALPA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238689955|sp|B5BEN7|RECA_SALPK RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|56129038|gb|AAV78544.1| RecA protein [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. ATCC 9150]
 gi|197095186|emb|CAR60737.1| RecA protein [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. AKU_12601]
          Length = 353

 Score =  454 bits (1168), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 209/323 (64%), Positives = 272/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AA+ QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAAMGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN   A+ IE  +R+
Sbjct: 304 ANATTWLKENPATAKEIEKRVRE 326


>gi|311278353|ref|YP_003940584.1| recA protein [Enterobacter cloacae SCF1]
 gi|308747548|gb|ADO47300.1| recA protein [Enterobacter cloacae SCF1]
          Length = 352

 Score =  454 bits (1168), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 219/349 (62%), Positives = 284/349 (81%), Gaps = 6/349 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+FFGEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFFGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
            N+  +L+EN   A+ IE  +R+   L+ ++    PA  T DD D  +T
Sbjct: 304 ANAIAWLKENPAAAKEIEKKVRE---LLLNNQDPTPAF-TVDDNDVAET 348


>gi|157964909|ref|YP_001499733.1| recombinase A [Rickettsia massiliae MTU5]
 gi|166918715|sp|A8F2Q0|RECA_RICM5 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|157844685|gb|ABV85186.1| RecA [Rickettsia massiliae MTU5]
          Length = 343

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/334 (66%), Positives = 282/334 (84%), Gaps = 2/334 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+  DK +A+ AAL+QI++ YGKG++M+LG +  +   IE VS+GSLGLDIALGIGG PK
Sbjct: 1   MSNTDKERAIAAALAQIEKSYGKGSVMKLGQRPHV--DIEAVSTGSLGLDIALGIGGIPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA+KLGV++  L+ISQ
Sbjct: 59  GRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELIISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++    QARLMSQALRKL
Sbjct: 119 PDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ + 
Sbjct: 179 TASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEEVI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G+QT+VKVVKNK++ PFK  +FDIMYG GIS  GE+IDLGVK  IV+KSG+WFS+K  R+
Sbjct: 239 GSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYKNVRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           GQGREN K +L+E+ +I+  IE ++R+ +  + +
Sbjct: 299 GQGRENVKQYLKEHPQISNEIEKIIREKSSKITN 332


>gi|296837371|gb|ADH59544.1| DNA recombinase [Burkholderia contaminans]
          Length = 302

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/303 (70%), Positives = 264/303 (87%), Gaps = 1/303 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+
Sbjct: 1   SIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IV
Sbjct: 60  LQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM
Sbjct: 120 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 179

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI
Sbjct: 180 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 239

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
           +YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ 
Sbjct: 240 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 299

Query: 331 LRQ 333
           +R+
Sbjct: 300 IRE 302


>gi|222474794|ref|YP_002563209.1| recA protein (recA) [Anaplasma marginale str. Florida]
 gi|254790419|sp|B9KHJ1|RECA_ANAMF RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|222418930|gb|ACM48953.1| recA protein (recA) [Anaplasma marginale str. Florida]
          Length = 359

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 213/322 (66%), Positives = 273/322 (84%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AA+SQI+R +G+GAIM+L    +  E ++ VS+GS+ LD ALGIGG PKGRIV
Sbjct: 13  EKQKALDAAISQIERAFGRGAIMKLKQHPA--EKMDSVSTGSIALDAALGIGGLPKGRIV 70

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTLALH IA++QK GG CAF+DAEHALD++YARKLGV++ +L++SQPDTG
Sbjct: 71  EIFGPESSGKTTLALHVIAEAQKQGGNCAFIDAEHALDTVYARKLGVNVGDLIVSQPDTG 130

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL I + LV SGA+D+IV+DSVAALTPRAEIEGDMG+   G+QARL+S ALRKLTS +
Sbjct: 131 EQALHIVEYLVCSGAIDVIVVDSVAALTPRAEIEGDMGDQHMGLQARLLSHALRKLTSVV 190

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++ CILVFINQ+R+KIGV++G+PE TTGG+ALKFY+S+RLDIR+V +IKDKD++ GNQT
Sbjct: 191 SKANCILVFINQIRIKIGVIYGNPEVTTGGSALKFYTSIRLDIRKVSAIKDKDNVIGNQT 250

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDI+Y EGIS  GE++D+GVK   V+KSGA +S+   +LGQGR
Sbjct: 251 RVKVVKNKVAPPFKQAEFDIVYNEGISKLGEIVDMGVKFGFVEKSGAHYSYGAVKLGQGR 310

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           EN+K +L+ N +IA  +E  +R
Sbjct: 311 ENAKGYLKSNPDIANELEQKIR 332


>gi|71066287|ref|YP_265014.1| recombinase A [Psychrobacter arcticus 273-4]
 gi|123761733|sp|Q4FQX8|RECA_PSYA2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|71039272|gb|AAZ19580.1| recombinase A [Psychrobacter arcticus 273-4]
          Length = 352

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 212/311 (68%), Positives = 262/311 (84%), Gaps = 1/311 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GK  IM LG   +  + ++VVS+GSLGLDIALGIGG PKGRIVEIYGPESSGKT
Sbjct: 15  QIEKQFGKNTIMHLGDDSAALD-VDVVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKT 73

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ L  IA+ QK GG CAF+DAEHALD +YARKLGV+  +LL+SQPD GEQALEITDMLV
Sbjct: 74  TMTLQAIAECQKQGGVCAFIDAEHALDPVYARKLGVNTDDLLLSQPDNGEQALEITDMLV 133

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D+IVIDSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN
Sbjct: 134 RSGAIDMIVIDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVLFIN 193

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+G++K+ D I GNQTRVKV+KNKMA 
Sbjct: 194 QIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRIGAVKNGDEIIGNQTRVKVIKNKMAP 253

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PF+Q EF+I YGEG +   E+IDLGV+   V K+G+W+S+  +++GQG+ NS +FL+EN 
Sbjct: 254 PFRQAEFEITYGEGTNHLAEVIDLGVEIGAVGKAGSWYSYGDEKIGQGKANSVLFLKENP 313

Query: 322 EIAENIESLLR 332
            IAE IE+ +R
Sbjct: 314 AIAEEIEAKIR 324


>gi|296837383|gb|ADH59550.1| DNA recombinase [Burkholderia contaminans]
 gi|296837387|gb|ADH59552.1| DNA recombinase [Burkholderia contaminans]
 gi|296837409|gb|ADH59563.1| DNA recombinase [Burkholderia contaminans]
          Length = 303

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/304 (70%), Positives = 265/304 (87%), Gaps = 1/304 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+
Sbjct: 1   SIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IV
Sbjct: 60  LQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM
Sbjct: 120 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 179

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI
Sbjct: 180 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 239

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
           +YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ 
Sbjct: 240 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 299

Query: 331 LRQN 334
           +R++
Sbjct: 300 IRES 303


>gi|109453452|gb|ABG34206.1| RecA [Salmonella enterica subsp. diarizonae]
          Length = 353

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 209/323 (64%), Positives = 272/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD++V+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVLVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN   A+ IE  +R+
Sbjct: 304 ANATTWLKENPATAKEIEKKVRE 326


>gi|59798289|sp|Q6LMU2|RECA_PHOPR RecName: Full=Protein RecA; AltName: Full=Recombinase A
          Length = 352

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/322 (67%), Positives = 265/322 (82%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   IE VS+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNKTM--DIETVSTGSLALDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +QK G TCAF+DAEHALD IYA+KLGVD+  LL SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLEVIASAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLCSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEIVDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+T
Sbjct: 182 KNANCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +V+K+GAW+S+KG ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKQAETQILYGQGFNRNGELIDLGVKHKLVEKAGAWYSYKGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            NS   L EN  IAE IE LLR
Sbjct: 302 ANSCKHLVENPAIAEEIEKLLR 323


>gi|15803214|ref|NP_289246.1| recombinase A [Escherichia coli O157:H7 EDL933]
 gi|25300497|pir||H85917 hypothetical protein recA [imported] - Escherichia coli  (strain
           O157:H7, substrain EDL933)
 gi|12517139|gb|AAG57804.1|AE005498_5 DNA strand exchange and renaturation, DNA-dependent ATPase, DNA-
           and ATP-dependent coprotease [Escherichia coli O157:H7
           str. EDL933]
          Length = 353

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 217/352 (61%), Positives = 284/352 (80%), Gaps = 11/352 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAV++IV+DSVAALTP+AEIE ++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVNVIVVDSVAALTPKAEIEXEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
            N+  +L++N E A+ IE  +R+        LL  P  N+  D   DD++ V
Sbjct: 304 ANATAWLKDNPETAKEIEKKVRE-------LLLSNP--NSTPDFSVDDSEGV 346


>gi|296837407|gb|ADH59562.1| DNA recombinase [Burkholderia contaminans]
          Length = 304

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/304 (70%), Positives = 265/304 (87%), Gaps = 1/304 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+
Sbjct: 1   SIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IV
Sbjct: 60  LQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM
Sbjct: 120 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 179

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI
Sbjct: 180 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 239

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
           +YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ 
Sbjct: 240 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 299

Query: 331 LRQN 334
           +R++
Sbjct: 300 IRES 303


>gi|300854514|ref|YP_003779498.1| recombinase RecA [Clostridium ljungdahlii DSM 13528]
 gi|300434629|gb|ADK14396.1| recombinase RecA [Clostridium ljungdahlii DSM 13528]
          Length = 362

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/352 (61%), Positives = 283/352 (80%), Gaps = 12/352 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +A+E+A+ QI++ +GKGAIM+LG    +   ++ +S+G L LDIALGIGG P+GR++
Sbjct: 7   EKLQAIESAMGQIEKQFGKGAIMKLGEHSVL--NVDAISTGCLDLDIALGIGGVPRGRVI 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTT+ALH IA++QK GG  AF+DAEHALD  YA+ LGVD+ NL++SQPDTG
Sbjct: 65  EIFGPESSGKTTVALHIIAEAQKNGGAAAFIDAEHALDPSYAQNLGVDINNLIVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQA+EIT+ LVRS A+D++V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLTSSI
Sbjct: 125 EQAMEITEALVRSNAIDVLVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTSSI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SKC+ VFINQ+R K+GVMFG+PE T GG ALKFYSSVR+D+RR+ SIK  D+I GN+T
Sbjct: 185 NKSKCVTVFINQLREKVGVMFGNPEVTPGGRALKFYSSVRMDVRRIDSIKQGDTIVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV+KNK+A PFKQ EFDIMY +GIS  G ++D+GV+  +V KSGAWFS+K  RLGQGR
Sbjct: 245 RVKVIKNKVAPPFKQAEFDIMYNQGISREGNVLDVGVREELVQKSGAWFSYKETRLGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI--NTKDDADKDDTD 360
           EN+K FL+EN +I   IES +R+   L        P++  N+ +D DK++ D
Sbjct: 305 ENAKQFLKENNDILVEIESKIREKYKL--------PSLKKNSLEDKDKNNVD 348


>gi|91792566|ref|YP_562217.1| recombinase A [Shewanella denitrificans OS217]
 gi|122968879|sp|Q12PY2|RECA_SHEDO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|91714568|gb|ABE54494.1| recA protein [Shewanella denitrificans OS217]
          Length = 353

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/347 (62%), Positives = 280/347 (80%), Gaps = 4/347 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL A LSQI++ +GKG+IM+LG   ++   +E +S+GSL LD+ALG GG P GRIV
Sbjct: 6   NKEKALAAVLSQIEKQFGKGSIMKLGEDRTM--DVETISTGSLSLDVALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YG+GI+  GEL+DLGV   +V+K+GAW+S+KG ++GQGR
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGQGINRTGELVDLGVAHKLVEKAGAWYSYKGDKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
            N+  +L EN  IA+ I++LLR+   L+  +  +E A +  D+ D +
Sbjct: 304 ANAGRYLTENPAIAQEIDTLLREM--LLNSNAPKESAADVDDNVDPE 348


>gi|296803120|gb|ADH51636.1| DNA recombinase [Burkholderia contaminans]
          Length = 300

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 213/301 (70%), Positives = 265/301 (88%), Gaps = 1/301 (0%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           L+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSG
Sbjct: 1   LAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSG 59

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEIT+ 
Sbjct: 60  KTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITNA 119

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           L+RSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++F
Sbjct: 120 LLRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIF 179

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           INQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK+
Sbjct: 180 INQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKV 239

Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
           + PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLRE
Sbjct: 240 SPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRE 299

Query: 320 N 320
           N
Sbjct: 300 N 300


>gi|56416424|ref|YP_153498.1| recombinase A [Anaplasma marginale str. St. Maries]
 gi|76363318|sp|Q5PBT6|RECA_ANAMM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|56387656|gb|AAV86243.1| recA protein [Anaplasma marginale str. St. Maries]
          Length = 359

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 212/322 (65%), Positives = 273/322 (84%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AA+SQI+R +G+GAIM+L    +  E ++ VS+GS+ LD ALGIGG PKGRIV
Sbjct: 13  EKQKALDAAISQIERAFGRGAIMKLKQHPA--EKMDSVSTGSIALDAALGIGGLPKGRIV 70

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTLALH IA++QK GG CAF+DAEHALD++YARKLGV++ +L++SQPDTG
Sbjct: 71  EIFGPESSGKTTLALHVIAEAQKQGGNCAFIDAEHALDTVYARKLGVNVGDLIVSQPDTG 130

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL I + LV SGA+D+IV+DSVAALTPRAEIEGDMG+   G+QARL+S ALRKLTS +
Sbjct: 131 EQALHIVEYLVCSGAIDVIVVDSVAALTPRAEIEGDMGDQHMGLQARLLSHALRKLTSVV 190

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++ CILVFINQ+R+KIGV++G+PE TTGG+ALKFY+S+RLDIR+V +IKDKD++ GNQT
Sbjct: 191 SKANCILVFINQIRIKIGVIYGNPEVTTGGSALKFYTSIRLDIRKVSAIKDKDNVIGNQT 250

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDI+Y EGIS  GE++D+GVK   V+KSGA +S+   +LGQGR
Sbjct: 251 RVKVVKNKVAPPFKQAEFDIVYNEGISKLGEIVDMGVKFGFVEKSGAHYSYGAVKLGQGR 310

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           EN+K +L+ N ++A  +E  +R
Sbjct: 311 ENAKGYLKSNPDVANELEQKIR 332


>gi|209694225|ref|YP_002262153.1| recombinase A [Aliivibrio salmonicida LFI1238]
 gi|226723624|sp|B6ENH8|RECA_ALISL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|208008176|emb|CAQ78319.1| protein RecA (recombinase A) [Aliivibrio salmonicida LFI1238]
          Length = 347

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 214/323 (66%), Positives = 267/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E VS+GSL LDIALG GG P GRIV
Sbjct: 4   NKKKALAAALGQIEKQFGKGSIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G TCAF+DAEHALD IYA+KLGVD+  LL SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLEVIAQAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLCSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEIVDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +VDK+GAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKHKLVDKAGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  F+REN EI   ++  LR+
Sbjct: 302 ANASKFMRENPEIGAELDKKLRE 324


>gi|304399192|ref|ZP_07381059.1| recA protein [Pantoea sp. aB]
 gi|304353246|gb|EFM17626.1| recA protein [Pantoea sp. aB]
          Length = 356

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 211/323 (65%), Positives = 271/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD++NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIASAQRKGKTCAFIDAEHALDPVYAKKLGVDIENLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+ FGEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQIMYGEGINTFGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  FL+EN  +A  I+  LR+
Sbjct: 304 SNAGNFLKENAAVANEIDLKLRE 326


>gi|261364593|ref|ZP_05977476.1| protein RecA [Neisseria mucosa ATCC 25996]
 gi|288567177|gb|EFC88737.1| protein RecA [Neisseria mucosa ATCC 25996]
          Length = 348

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/331 (65%), Positives = 279/331 (84%), Gaps = 3/331 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +KSKAL AAL+QI++ +GKG+IM++ GSQ    E ++V+S+GSLG+D+ALG+GG P+GR+
Sbjct: 4   EKSKALAAALAQIEKNFGKGSIMKMDGSQQE--ENLDVISTGSLGVDLALGVGGLPRGRV 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEI+GPESSGKTTL L  IAQ QKTGG CAF+DAEHA D +YARKLGV ++ L +SQPDT
Sbjct: 62  VEIFGPESSGKTTLCLEAIAQCQKTGGICAFIDAEHAFDPVYARKLGVKVEELYLSQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSG VD++V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  
Sbjct: 122 GEQALEICDTLVRSGGVDMVVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGH 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I R+  ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G IK  D + GN+
Sbjct: 182 IKRTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGQIKKGDDVIGNE 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           T+VKV+KNK+A PF+Q EFDI+YGEG+S+ GELIDLGVK +IV+KSGAW+S+ G ++GQG
Sbjct: 242 TKVKVIKNKVAPPFRQAEFDILYGEGVSWEGELIDLGVKYNIVEKSGAWYSYNGAKIGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           ++N +++L+EN E+A  I++ +R   G+  D
Sbjct: 302 KDNVRVWLKENPEVANEIDAKIRAAVGINVD 332


>gi|114330801|ref|YP_747023.1| recombinase A [Nitrosomonas eutropha C91]
 gi|122314264|sp|Q0AHX4|RECA_NITEC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|114307815|gb|ABI59058.1| RecA protein [Nitrosomonas eutropha C91]
          Length = 343

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/322 (67%), Positives = 273/322 (84%), Gaps = 1/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K+KAL AAL+QI++ YGKG+IM+LG    + + I+VVS+GSL LDIALG+GG P+GRI+
Sbjct: 4   NKNKALTAALAQIEKQYGKGSIMRLGDS-DVAKDIQVVSTGSLSLDIALGVGGLPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA+K+GV+++ LLISQPD G
Sbjct: 63  EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDPQYAQKIGVNVQELLISQPDNG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSG+VDI+VIDSVAALTPRAEIEG+MGE   G+QARLMSQALRKLT++I
Sbjct: 123 EQALEITDMLVRSGSVDIVVIDSVAALTPRAEIEGEMGEPQMGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+   ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK  + I GN+T
Sbjct: 183 KRTNTTVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKRGEEIVGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ +F I+YGEGIS   E+I+LGV   +++K+GAW+S+ G+++GQGR
Sbjct: 243 RVKVVKNKVAPPFKQADFAILYGEGISRESEIIELGVLHKLIEKAGAWYSYNGEKIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           +N + +L+E+ ++A  IE  +R
Sbjct: 303 DNVRDYLKEHKDLAHEIEQKIR 324


>gi|261253949|ref|ZP_05946522.1| RecA protein [Vibrio orientalis CIP 102891]
 gi|260937340|gb|EEX93329.1| RecA protein [Vibrio orientalis CIP 102891]
          Length = 348

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 217/345 (62%), Positives = 277/345 (80%), Gaps = 10/345 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAIDVMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKQAETQILYGQGFNREGELIDLGVKHKLIEKAGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            N+  FLREN E A+ I++ LR+        +L  PA    DDA+
Sbjct: 302 ANAGKFLRENTEAAKTIDAKLRE--------MLLSPAEVQPDDAE 338


>gi|254994656|ref|ZP_05276846.1| recombinase A [Anaplasma marginale str. Mississippi]
 gi|255002761|ref|ZP_05277725.1| recombinase A [Anaplasma marginale str. Puerto Rico]
          Length = 357

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 213/322 (66%), Positives = 273/322 (84%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AA+SQI+R +G+GAIM+L    +  E ++ VS+GS+ LD ALGIGG PKGRIV
Sbjct: 11  EKQKALDAAISQIERAFGRGAIMKLKQHPA--EKMDSVSTGSIALDAALGIGGLPKGRIV 68

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTLALH IA++QK GG CAF+DAEHALD++YARKLGV++ +L++SQPDTG
Sbjct: 69  EIFGPESSGKTTLALHVIAEAQKQGGNCAFIDAEHALDTVYARKLGVNVGDLIVSQPDTG 128

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL I + LV SGA+D+IV+DSVAALTPRAEIEGDMG+   G+QARL+S ALRKLTS +
Sbjct: 129 EQALHIVEYLVCSGAIDVIVVDSVAALTPRAEIEGDMGDQHMGLQARLLSHALRKLTSVV 188

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++ CILVFINQ+R+KIGV++G+PE TTGG+ALKFY+S+RLDIR+V +IKDKD++ GNQT
Sbjct: 189 SKANCILVFINQIRIKIGVIYGNPEVTTGGSALKFYTSIRLDIRKVSAIKDKDNVIGNQT 248

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDI+Y EGIS  GE++D+GVK   V+KSGA +S+   +LGQGR
Sbjct: 249 RVKVVKNKVAPPFKQAEFDIVYNEGISKLGEIVDMGVKFGFVEKSGAHYSYGAVKLGQGR 308

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           EN+K +L+ N +IA  +E  +R
Sbjct: 309 ENAKGYLKSNPDIANELEQKIR 330


>gi|93006838|ref|YP_581275.1| recombinase A [Psychrobacter cryohalolentis K5]
 gi|123386582|sp|Q1Q962|RECA_PSYCK RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|92394516|gb|ABE75791.1| recA protein [Psychrobacter cryohalolentis K5]
          Length = 352

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 212/311 (68%), Positives = 261/311 (83%), Gaps = 1/311 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GK  IM LG   +  + ++VVS+GSLGLDIALGIGG PKGRIVEIYGPESSGKT
Sbjct: 15  QIEKQFGKNTIMHLGDNSATLD-VDVVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKT 73

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ L  IA  QK GG CAF+DAEHALD +YARKLGV+  +LL+SQPD GEQALEITDMLV
Sbjct: 74  TMTLQAIAACQKQGGVCAFIDAEHALDPVYARKLGVNTDDLLLSQPDNGEQALEITDMLV 133

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D+IVIDSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN
Sbjct: 134 RSGAIDMIVIDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVLFIN 193

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+G++K+ D I GNQTRVKV+KNKMA 
Sbjct: 194 QIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRIGAVKNGDEIIGNQTRVKVIKNKMAP 253

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PF+Q EF+I YGEG +   E+IDLGV+   V K+G+W+S+  +++GQG+ NS +FL+EN 
Sbjct: 254 PFRQAEFEITYGEGTNHLAEVIDLGVEIGAVGKAGSWYSYGDEKIGQGKANSVLFLKENP 313

Query: 322 EIAENIESLLR 332
            IAE IE+ +R
Sbjct: 314 AIAEEIEAKIR 324


>gi|300718058|ref|YP_003742861.1| Recombinase A [Erwinia billingiae Eb661]
 gi|299063894|emb|CAX61014.1| Recombinase A [Erwinia billingiae Eb661]
          Length = 355

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/343 (63%), Positives = 276/343 (80%), Gaps = 11/343 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIASAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++T
Sbjct: 184 KNSGTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+ +GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQIMYGEGINIYGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
            NS  FL+EN  IA  IE+ LR        +LL  P  +TK D
Sbjct: 304 ANSGNFLKENPAIANEIEAKLRA-------TLLTNP--DTKPD 337


>gi|327394967|dbj|BAK12389.1| protein RecA [Pantoea ananatis AJ13355]
          Length = 356

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 211/323 (65%), Positives = 272/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPE+SGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPEASGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+ FGEL+DLGVK  +++K+GAW+S+KG ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQIMYGEGINTFGELVDLGVKHKLIEKAGAWYSYKGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  FL+EN  +A+ ++  LR+
Sbjct: 304 ANAGNFLKENAAVADELDIKLRE 326


>gi|15603682|ref|NP_246756.1| recombinase A [Pasteurella multocida subsp. multocida str. Pm70]
 gi|3219853|sp|P95526|RECA_PASMU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|1772591|emb|CAA67699.1| RecA protein [Pasteurella multocida]
 gi|12722240|gb|AAK03901.1| RecA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 354

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/350 (63%), Positives = 283/350 (80%), Gaps = 10/350 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K+KAL AAL QI++ +GKG+IM+LG   ++   +E VS+GSL LD+ALGIGG P GRIV
Sbjct: 6   EKNKALAAALGQIEKQFGKGSIMKLGDTQAL--DVEAVSTGSLSLDVALGIGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IAQ+QK G TCAF+DAEHALD IYA KLGV++  LL+SQPD G
Sbjct: 64  EIFGPESSGKTTLTLSVIAQAQKEGKTCAFIDAEHALDPIYAAKLGVNVNELLVSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVD+I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT  I
Sbjct: 124 EQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLTGQI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+T
Sbjct: 184 KNSNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVIGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PF+QV+F I+YG+GIS  GELI+LGVK  +VDK+GAW+++ G+++GQG+
Sbjct: 244 RVKVVKNKVAAPFRQVDFQILYGQGISKTGELIELGVKHKLVDKAGAWYAYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP-AINTKDDADKDDT 359
            N+  +L E+ E A  +E+ LR       + LL  P  +   D A+K+++
Sbjct: 304 ANAMKWLEEHPEEALALETKLR-------NELLANPEKVLAADIAEKNES 346


>gi|296837417|gb|ADH59567.1| DNA recombinase [Burkholderia lata]
          Length = 301

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/302 (71%), Positives = 263/302 (87%), Gaps = 1/302 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ 
Sbjct: 1   IMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEL 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVI
Sbjct: 60  QKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVI 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMF
Sbjct: 120 DSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMF 179

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+
Sbjct: 180 GNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDIL 239

Query: 272 YGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLL 331
           YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ +
Sbjct: 240 YGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRI 299

Query: 332 RQ 333
           R+
Sbjct: 300 RE 301


>gi|294634757|ref|ZP_06713286.1| protein RecA [Edwardsiella tarda ATCC 23685]
 gi|291091816|gb|EFE24377.1| protein RecA [Edwardsiella tarda ATCC 23685]
          Length = 353

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/351 (63%), Positives = 278/351 (79%), Gaps = 10/351 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LD+ALGIGG P GRIV
Sbjct: 4   NKQRALAAALGQIEKQFGKGSIMRLGDTQTL--DIESISTGSLSLDVALGIGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA++Q  G TCAF+DAEHALD IYA KLGV + +LL+SQPDTG
Sbjct: 62  EIFGPESSGKTTLTLSVIARAQAAGKTCAFIDAEHALDPIYAAKLGVKVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVD+I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 122 EQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C++VFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK+ D + GN+T
Sbjct: 182 KNANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG GIS   ELIDLGVK  ++DKSGAW+S+ G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGAGISKESELIDLGVKHKLLDKSGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
            NS  FL+EN  I+  +E  LR+        LL   A  T  D  K + D+
Sbjct: 302 ANSMKFLQENPAISAELEGKLRE--------LLLSHAAATDADRAKGEVDD 344


>gi|251779396|ref|ZP_04822316.1| protein RecA [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083711|gb|EES49601.1| protein RecA [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 356

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/352 (61%), Positives = 280/352 (79%), Gaps = 3/352 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           ++K KA+E A+ QI++ +GKG++M+LG    +   I+ +S+G L LDIALGIGG PKGRI
Sbjct: 6   INKLKAIENAMGQIEKQFGKGSVMKLGEDSVL--NIDAISTGCLDLDIALGIGGVPKGRI 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH  A++QK GG   F+DAEHALD  YAR LGVD +NL++SQPDT
Sbjct: 64  VEIYGPESSGKTTIALHIAAEAQKKGGAVGFIDAEHALDPSYARNLGVDTENLIVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQ LEI + LVRSGA+D+I++DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL  +
Sbjct: 124 GEQGLEIAEALVRSGAIDVIIVDSVAALVPKAEIEGEMGDSHIGLQARLMSQALRKLAGT 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS++ CI +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLD+RR+ SIK  D I GN+
Sbjct: 184 ISKTNCIAIFINQLREKVGVMFGSPETTTGGRALKFYASVRLDVRRIDSIKQGDGIVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TR+KV KNK+A PFKQ EFDIMY EGIS  G ++D+GVK  IV KSGAWFS+   RLGQG
Sbjct: 244 TRIKVTKNKVAPPFKQAEFDIMYNEGISREGNIVDVGVKEEIVQKSGAWFSYGDIRLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL-VADSLLQEPAINTKDDADKDDTD 360
           REN+K +L+EN E+A +IE+ +R+   L + D++++E A   K   +K+ +D
Sbjct: 304 RENAKQYLKENPEVALDIENQIREKHNLPLMDAVIKETAQEVKGKENKEQSD 355


>gi|253997269|ref|YP_003049333.1| recombinase A [Methylotenera mobilis JLW8]
 gi|253983948|gb|ACT48806.1| recA protein [Methylotenera mobilis JLW8]
          Length = 342

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/325 (69%), Positives = 279/325 (85%), Gaps = 1/325 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K+KAL AALSQI++ +GKG+IM++G    I E I+ VS+GSLGLDIALGIGG P+GRI+
Sbjct: 4   NKAKALSAALSQIEKQFGKGSIMRMGDS-DIGEDIQAVSTGSLGLDIALGIGGLPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GG  AF+DAEHALD  YA KLGV++ +LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLSVIAEMQKLGGVAAFIDAEHALDPQYAAKLGVNVPDLLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VDI+V+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRKLT +I
Sbjct: 123 EQALEIADMLVRSGSVDIVVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKLTGNI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK  D ITG++T
Sbjct: 183 KRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKKGDEITGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV+KNK+A PFKQ EFDIMYGEGIS FGE+I+LG    +++K+GAW+S+ G+++GQG+
Sbjct: 243 RVKVIKNKVAPPFKQAEFDIMYGEGISRFGEIIELGANIKLIEKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
           EN+K FLRE+ EIA  +E+ +R NA
Sbjct: 303 ENAKEFLREHPEIAAELEAKIRANA 327


>gi|254519170|ref|ZP_05131226.1| recombinase A [Clostridium sp. 7_2_43FAA]
 gi|226912919|gb|EEH98120.1| recombinase A [Clostridium sp. 7_2_43FAA]
          Length = 346

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/340 (64%), Positives = 277/340 (81%), Gaps = 5/340 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK KA+E A+ QI++ +GKG+IM+LG   ++   IE +S+G L LDIALG+GG PKGRI
Sbjct: 6   MDKLKAIENAMGQIEKQFGKGSIMKLGENSAL--NIETISTGCLDLDIALGVGGLPKGRI 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH  A++QK GG  AF+DAEHALD  YAR+LGVD +NL++SQPDT
Sbjct: 64  IEIYGPESSGKTTVALHVAAEAQKLGGAVAFIDAEHALDPSYARRLGVDTENLIVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQ LEI + LVRSGA+D+IV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT +
Sbjct: 124 GEQGLEIAEALVRSGAIDVIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGT 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I ++ CI +FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+RR+ SIK  +S+ GN+
Sbjct: 184 IQKTGCIAIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRRIDSIKQGESVVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKV+KNK+A PFKQ EFDIMY EGIS  G ++D+GVK  +V KSGAWFS+   RLGQG
Sbjct: 244 TRVKVIKNKVAPPFKQAEFDIMYNEGISRTGNIVDVGVKEGMVQKSGAWFSYGDVRLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
           REN+K +L++N EIA  IE+ +R+   L    +++E AI+
Sbjct: 304 RENAKQYLKDNPEIALEIENKIREKYEL---PIMKEVAID 340


>gi|260599086|ref|YP_003211657.1| recombinase A [Cronobacter turicensis z3032]
 gi|260218263|emb|CBA33202.1| Protein recA [Cronobacter turicensis z3032]
          Length = 354

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 209/323 (64%), Positives = 271/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQRAGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD++V+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVLVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ + + G++T
Sbjct: 184 KNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGEEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINFYGELVDLGVKHKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  FL+EN  +A+ IE  LR+
Sbjct: 304 ANATNFLKENKPMADEIEKKLRE 326


>gi|296803002|gb|ADH51577.1| DNA recombinase [Burkholderia contaminans]
          Length = 301

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/302 (71%), Positives = 263/302 (87%), Gaps = 1/302 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+
Sbjct: 1   SIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IV
Sbjct: 60  LQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM
Sbjct: 120 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 179

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI
Sbjct: 180 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 239

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
           +YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ 
Sbjct: 240 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 299

Query: 331 LR 332
           +R
Sbjct: 300 IR 301


>gi|206577023|ref|YP_002236965.1| protein RecA [Klebsiella pneumoniae 342]
 gi|288933922|ref|YP_003437981.1| recA protein [Klebsiella variicola At-22]
 gi|290510999|ref|ZP_06550368.1| RecA protein [Klebsiella sp. 1_1_55]
 gi|226723632|sp|B5XVB6|RECA_KLEP3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|206566081|gb|ACI07857.1| protein RecA [Klebsiella pneumoniae 342]
 gi|288888651|gb|ADC56969.1| recA protein [Klebsiella variicola At-22]
 gi|289775992|gb|EFD83991.1| RecA protein [Klebsiella sp. 1_1_55]
          Length = 352

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 211/323 (65%), Positives = 271/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+FFGEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFFGELVDLGVKEKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN   A+ IE  +R+
Sbjct: 304 ANAITWLKENPAAAKEIEKKVRE 326


>gi|51473929|ref|YP_067686.1| recombinase A [Rickettsia typhi str. Wilmington]
 gi|59798216|sp|Q68VY8|RECA_RICTY RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|51460241|gb|AAU04204.1| recombinase A [Rickettsia typhi str. Wilmington]
          Length = 340

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/334 (66%), Positives = 282/334 (84%), Gaps = 2/334 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+  DK +A+ AAL+QI++ YGKG++M+LG + +I   IE +S+GSLGLDIALGIGG PK
Sbjct: 1   MSNTDKERAIAAALAQIEKSYGKGSVMKLGQRPNI--DIEAISTGSLGLDIALGIGGVPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL LH IA+SQK GGTCAF+DAEHALD  YA+KLGV++  L+ISQ
Sbjct: 59  GRIIEIFGPESSGKTTLTLHLIAESQKNGGTCAFIDAEHALDPAYAKKLGVNIDELIISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++    QARLMSQALRKL
Sbjct: 119 PDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ + 
Sbjct: 179 TASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEEVI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G+QT+VKVVKNK++ PFK  +FDIMYG GIS  GE+IDLGVK  I++KSG+WF++   R+
Sbjct: 239 GSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLEIIEKSGSWFAYNKVRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           GQGREN K +L+E+ +IA  IE ++R+ +  + +
Sbjct: 299 GQGRENVKQYLKEHPQIANEIEKIIREKSSAITN 332


>gi|262199062|ref|YP_003270271.1| recA protein [Haliangium ochraceum DSM 14365]
 gi|262082409|gb|ACY18378.1| recA protein [Haliangium ochraceum DSM 14365]
          Length = 379

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/326 (65%), Positives = 273/326 (83%), Gaps = 1/326 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + KA++ AL  I++ +GKG+IM+LG+   I   ++ + +GSLGLDIALGIGG P+GRI+E
Sbjct: 11  REKAIDLALGAIEKQFGKGSIMRLGTD-PIEANVQTIPTGSLGLDIALGIGGLPRGRIIE 69

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA++Q+ GG  AF+DAEHALD  YA+KLGV    LL+SQPD GE
Sbjct: 70  IYGPESSGKTTLTLHAIAEAQRRGGVAAFIDAEHALDVSYAKKLGVKTDELLVSQPDFGE 129

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DMLVRS A+D++VIDSVAALTPRAE+EG+MG+S  G+QARLMSQALRKLT +IS
Sbjct: 130 QALEIADMLVRSNALDLVVIDSVAALTPRAELEGEMGDSHVGLQARLMSQALRKLTGAIS 189

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S+  ++FINQ+R+KIGVMFGSPETTTGGNALKFY SVRLDIRR+G+IK  D + GN+TR
Sbjct: 190 KSRTTVIFINQIRLKIGVMFGSPETTTGGNALKFYCSVRLDIRRIGAIKKDDQVVGNRTR 249

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNKMA PF++VEFDI+YG GIS  G+L+DLGV A+I+DKSGAW+S+  +R+GQGRE
Sbjct: 250 VKVVKNKMAPPFREVEFDILYGHGISREGDLLDLGVAANIIDKSGAWYSYGSERIGQGRE 309

Query: 312 NSKIFLRENIEIAENIESLLRQNAGL 337
           NSK+FL+E+ E+  +IE  + +  G+
Sbjct: 310 NSKVFLQEHPEVYLDIEGKVLEAYGI 335


>gi|296837363|gb|ADH59540.1| DNA recombinase [Burkholderia contaminans]
          Length = 305

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/305 (70%), Positives = 265/305 (86%), Gaps = 1/305 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGE IS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGESISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQN 334
            +R++
Sbjct: 300 RIRES 304


>gi|15604595|ref|NP_221113.1| recombinase A [Rickettsia prowazekii str. Madrid E]
 gi|730486|sp|P41079|RECA_RICPR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|402679|gb|AAA17883.1| Rec A Protein [Rickettsia prowazekii]
 gi|3861290|emb|CAA15189.1| RECA PROTEIN (recA) [Rickettsia prowazekii]
 gi|292572409|gb|ADE30324.1| RecA [Rickettsia prowazekii Rp22]
          Length = 340

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 220/334 (65%), Positives = 283/334 (84%), Gaps = 2/334 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+ +DK +A+ AAL+QI++ YGKG++M+LG + ++   IE +S+GSLGLDIALGIGG PK
Sbjct: 1   MSNIDKERAIAAALAQIEKSYGKGSVMKLGQRPNV--DIEAISTGSLGLDIALGIGGVPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL LH IA+SQK GGTCAF+DAEHALD  YA+KLGV++  L+ISQ
Sbjct: 59  GRIIEIFGPESSGKTTLTLHLIAESQKKGGTCAFIDAEHALDPAYAKKLGVNIDELIISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++    QARLMSQALRKL
Sbjct: 119 PDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ + 
Sbjct: 179 TASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEEVI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G+QT+VKVVKNK++ PFK  +FDIMYG GIS  GE+IDLGVK  I++KSG+WFS+   R+
Sbjct: 239 GSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLEIIEKSGSWFSYNKIRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           GQGREN K +L+E+ +I+  IE ++R+ +  + +
Sbjct: 299 GQGRENVKQYLKEHPQISNEIEKIIREKSSAITN 332


>gi|317049271|ref|YP_004116919.1| recA protein [Pantoea sp. At-9b]
 gi|316950888|gb|ADU70363.1| recA protein [Pantoea sp. At-9b]
          Length = 356

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 213/322 (66%), Positives = 268/322 (83%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+ FGEL+DLGVK  +V+K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQIMYGEGINTFGELVDLGVKHKLVEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N+  FL+EN  IA  I+  LR
Sbjct: 304 ANATNFLKENPAIANEIDQKLR 325


>gi|157148233|ref|YP_001455552.1| recombinase A [Citrobacter koseri ATCC BAA-895]
 gi|166220638|sp|A8ANQ3|RECA_CITK8 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|157085438|gb|ABV15116.1| hypothetical protein CKO_04050 [Citrobacter koseri ATCC BAA-895]
          Length = 354

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 210/323 (65%), Positives = 272/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN   A+ IE  +R+
Sbjct: 304 ANATAWLKENPATAKEIEKKVRE 326


>gi|2460018|gb|AAC38154.1| RecA [Xanthomonas oryzae pv. oryzae]
          Length = 344

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/325 (66%), Positives = 274/325 (84%), Gaps = 4/325 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AALSQI++ +GKG++M++G +  + E +EV+ +GSL LDIALG GG PKGR+V
Sbjct: 4   NKKRALAAALSQIEKQFGKGSVMRMGDR--VIEAVEVIPTGSLMLDIALGTGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK GGT AF+DAEHALD +YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAQCQKLGGTAAFIDAEHALDPVYAAKLGVNVDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS +VDI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSSSVDIVVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  ++VFINQ+RMKIGVM    SPE TTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 182 KRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELID+ V+A +V+K+GAW+S+  +R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMAVEAKLVEKAGAWYSYGDERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333
           G++N++ +LR+N ++A  +E+ LR+
Sbjct: 302 GKDNARTYLRDNPQVAVRLEAELRE 326


>gi|114562240|ref|YP_749753.1| recombinase A [Shewanella frigidimarina NCIMB 400]
 gi|122300464|sp|Q086A0|RECA_SHEFN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|114333533|gb|ABI70915.1| recA protein [Shewanella frigidimarina NCIMB 400]
          Length = 354

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/322 (67%), Positives = 266/322 (82%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL A LSQI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKEKALAAVLSQIEKQFGKGSIMKLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IKD D + GN+T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YG+GI+  GEL+DLGV   +VDK+GAW+S+KG+++GQGR
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGQGINRTGELVDLGVAHKLVDKAGAWYSYKGEKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N+  FL EN  IA  I + LR
Sbjct: 304 ANAGKFLTENPVIASEINTTLR 325


>gi|189426210|ref|YP_001953387.1| recombinase A [Geobacter lovleyi SZ]
 gi|189422469|gb|ACD96867.1| recA protein [Geobacter lovleyi SZ]
          Length = 336

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 212/323 (65%), Positives = 274/323 (84%), Gaps = 1/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK+KA+E ALSQI++ +GKGAIM+LG+   +  G+E +S+G++ LD+ALG+GG P+GR++
Sbjct: 3   DKNKAIELALSQIEKQFGKGAIMRLGND-EVLPGVESISTGAISLDLALGVGGVPRGRVI 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTLALH +A++QK+GG  AFVDAEHALD  YARKLGV   +LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTLALHIVAEAQKSGGIAAFVDAEHALDINYARKLGVKTDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+D++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  I
Sbjct: 122 EQALEIAETLVRSGAIDVLVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGII 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S C ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIR++ ++K  D + G++T
Sbjct: 182 SKSNCCVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRKIATLKQGDQVIGSRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK+ EFDI+YGEGIS  G+++DL V  +I+DKSGAWFS+  +R+GQGR
Sbjct: 242 RVKVVKNKVAPPFKEAEFDILYGEGISRTGDVLDLAVDRNIIDKSGAWFSYNKERIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           ENS+ FL+EN  +   IE+ L +
Sbjct: 302 ENSRQFLKENPVMLAEIEARLME 324


>gi|124265268|ref|YP_001019272.1| recombinase A [Methylibium petroleiphilum PM1]
 gi|166918713|sp|A2SBU8|RECA_METPP RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|124258043|gb|ABM93037.1| RecA protein [Methylibium petroleiphilum PM1]
          Length = 357

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 217/315 (68%), Positives = 278/315 (88%), Gaps = 1/315 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG IM+LG +G + + IEVVS+GSLGLDIALG+GG P+GR++EIYGPESSGKTT
Sbjct: 23  IEKQFGKGTIMRLG-EGEVIDDIEVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTT 81

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK  GTCAF+DAEHALDS YA+KLGV+L+ LLISQPDTGEQALEI D LVR
Sbjct: 82  LTLQVIAEMQKLAGTCAFIDAEHALDSQYAQKLGVNLQELLISQPDTGEQALEIVDALVR 141

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG+VD+IV+DSVAALTP+AE+EG+MG+SLPG+QARLMSQALRKLT++I +S C+++FINQ
Sbjct: 142 SGSVDLIVVDSVAALTPKAELEGEMGDSLPGLQARLMSQALRKLTATIKKSNCMVIFINQ 201

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  + + GN+T+VKVVKNK++ P
Sbjct: 202 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKRGEEVIGNETKVKVVKNKVSPP 261

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FK  EFDI++GEG+S  GE+IDLGV A ++DKSGAW+++ G+++GQG++NS+ FLREN E
Sbjct: 262 FKTAEFDILFGEGVSREGEIIDLGVIAKVIDKSGAWYAYNGEKIGQGKDNSREFLRENPE 321

Query: 323 IAENIESLLRQNAGL 337
           +A  IE+ +R++ G+
Sbjct: 322 LAHEIENKIRESLGV 336


>gi|153954070|ref|YP_001394835.1| recombinase A [Clostridium kluyveri DSM 555]
 gi|219854683|ref|YP_002471805.1| hypothetical protein CKR_1340 [Clostridium kluyveri NBRC 12016]
 gi|146346951|gb|EDK33487.1| RecA [Clostridium kluyveri DSM 555]
 gi|219568407|dbj|BAH06391.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 363

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 219/357 (61%), Positives = 287/357 (80%), Gaps = 7/357 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +A+E+A+ QI++ +GKGAIM+LG + SI   ++VVS+G L LDIALGIGG P+GR++
Sbjct: 7   EKLQAIESAMLQIEKQFGKGAIMKLG-ENSIL-NVDVVSTGCLDLDIALGIGGVPRGRVI 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTT+ALH IA++QKTGG  AF+DAEHALD  YA+ LGVD++NL++SQPDTG
Sbjct: 65  EIFGPESSGKTTVALHIIAEAQKTGGAAAFIDAEHALDPSYAKNLGVDIENLIVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRS A+D++V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLTSSI
Sbjct: 125 EQALEIAEALVRSNAIDVLVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTSSI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SKC+ +FINQ+R K+G+MFG+PE T GG ALKFYSSVR+D+RR+ SIK  D++ GN+T
Sbjct: 185 NKSKCVTIFINQLREKVGIMFGNPEVTPGGRALKFYSSVRMDVRRIDSIKQGDTMVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV+KNK+A PFKQ EFDIMY +GIS  G ++D+GV+   V KSGAWFS+K  RLGQGR
Sbjct: 245 KVKVIKNKVAPPFKQAEFDIMYNQGISREGNVLDVGVREDFVQKSGAWFSYKEIRLGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD-----SLLQEPAINTKDDADKDDTDNV 362
           EN+K FLREN +I   IE+ +R+   L  D     S   +   +TK+D  K D+ N+
Sbjct: 305 ENAKQFLRENTDILFEIENKIREKYNLPIDKSNLSSDKNQNEKSTKEDNKKQDSKNL 361


>gi|187935438|ref|YP_001885485.1| recombinase A [Clostridium botulinum B str. Eklund 17B]
 gi|238691622|sp|B2TJ69|RECA_CLOBB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|187723591|gb|ACD24812.1| protein RecA [Clostridium botulinum B str. Eklund 17B]
          Length = 356

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/352 (61%), Positives = 282/352 (80%), Gaps = 5/352 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           ++K KA+E A+ QI++ +GKG++M+LG    +   I+ +S+G L LDIALGIGG PKGRI
Sbjct: 6   INKLKAIENAMGQIEKQFGKGSVMKLGENSVL--NIDAISTGCLDLDIALGIGGVPKGRI 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH  A++QK GG   F+DAEHALD  YAR LGVD +NL++SQPDT
Sbjct: 64  VEIYGPESSGKTTIALHIAAEAQKKGGAVGFIDAEHALDPSYARNLGVDTENLIVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQ LEI + LVRSGA+D+I++DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL  +
Sbjct: 124 GEQGLEIAEALVRSGAIDVIIVDSVAALVPKAEIEGEMGDSHIGLQARLMSQALRKLAGT 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS++ CI +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLD+RR+ SIK  D I GN+
Sbjct: 184 ISKTNCIAIFINQLREKVGVMFGSPETTTGGRALKFYASVRLDVRRIDSIKQGDGIVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TR+KV KNK+A PFKQ EFDIMY EGIS  G ++D+GVK  IV KSGAWFS+   RLGQG
Sbjct: 244 TRIKVTKNKVAPPFKQAEFDIMYNEGISRQGNIVDVGVKEEIVQKSGAWFSYGDIRLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL-VADSLLQEPA--INTKDDADKDD 358
           REN+K +L+EN E+A +IE+ +R+   L + D++++E A  +N K++ ++ D
Sbjct: 304 RENAKQYLKENPEVALDIENQIREKHNLPLMDAVIKETAQEVNGKENKEQSD 355


>gi|167623166|ref|YP_001673460.1| recombinase A [Shewanella halifaxensis HAW-EB4]
 gi|189039608|sp|B0TK14|RECA_SHEHH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|167353188|gb|ABZ75801.1| recA protein [Shewanella halifaxensis HAW-EB4]
          Length = 355

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 212/322 (65%), Positives = 270/322 (83%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL A LSQI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P GRIV
Sbjct: 6   NKEKALNAVLSQIEKQFGKGSIMKLGEDRSM--DVETISTGSLSLDVALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +QK G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLEVIAAAQKQGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD++ + GN+T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDREEVIGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YG+GI+  GEL+DLGV+  +++KSGAW+++KG ++GQGR
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGQGINSTGELVDLGVQHKLIEKSGAWYAYKGNKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N+  +L EN E+++ IE+ LR
Sbjct: 304 ANAGKYLIENPEVSDEIETTLR 325


>gi|160876375|ref|YP_001555691.1| recombinase A [Shewanella baltica OS195]
 gi|304410157|ref|ZP_07391776.1| recA protein [Shewanella baltica OS183]
 gi|307302132|ref|ZP_07581890.1| recA protein [Shewanella baltica BA175]
 gi|189039607|sp|A9KYG0|RECA_SHEB9 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|160861897|gb|ABX50431.1| recA protein [Shewanella baltica OS195]
 gi|304351566|gb|EFM15965.1| recA protein [Shewanella baltica OS183]
 gi|306914170|gb|EFN44591.1| recA protein [Shewanella baltica BA175]
 gi|315268565|gb|ADT95418.1| recA protein [Shewanella baltica OS678]
          Length = 355

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/354 (62%), Positives = 279/354 (78%), Gaps = 10/354 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL A L QI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P GRIV
Sbjct: 6   NKEKALAAVLIQIEKQFGKGSIMKLGEDRSM--DVETISTGSLSLDVALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YG+GI+  GEL+DLGV   +++K+GAW+S+KG ++GQGR
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP-AINTKDDADKDDTDNVE 363
            N+  +L EN  IA  I+  LR+        LL  P A+  KDDA  +D  ++E
Sbjct: 304 ANAGKYLTENPAIATEIDKTLRE-------LLLSNPSALAAKDDASTEDNVDLE 350


>gi|70904903|gb|AAZ14029.1| RecA [Burkholderia pyrrocinia]
          Length = 308

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 213/301 (70%), Positives = 262/301 (87%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
           G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT 
Sbjct: 5   GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKIGGTA 64

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AF+DA HALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL 
Sbjct: 65  AFIDAXHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALV 124

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           P AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTT
Sbjct: 125 PXAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTT 184

Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISF 278
           GGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS 
Sbjct: 185 GGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISR 244

Query: 279 FGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLV 338
            GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ +R++ G+V
Sbjct: 245 QGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIRESLGVV 304

Query: 339 A 339
           A
Sbjct: 305 A 305


>gi|291561253|emb|CBL40052.1| protein RecA [butyrate-producing bacterium SS3/4]
          Length = 354

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 213/336 (63%), Positives = 274/336 (81%), Gaps = 1/336 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN  DK KAL+AAL+QI++ YGKG++M+LG  G+    IE V +GSL LDIALG+GG PK
Sbjct: 1   MNKDDKLKALDAALTQIEKAYGKGSVMKLGDSGANMN-IETVPTGSLSLDIALGLGGLPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YA+ +GVD+ NL ISQ
Sbjct: 60  GRVVEIYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+GDMG+S  G+QARLMSQALRKL
Sbjct: 120 PDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+ IS++ CI++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+RR  S+K    + 
Sbjct: 180 TAIISKTNCIVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRRTESLKQSGEVI 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN  RVKVVKNK+A PFK+ EFDIM+G+GIS  G+++DL   A+IV+KSG+W+++KG ++
Sbjct: 240 GNHVRVKVVKNKIAPPFKEAEFDIMFGKGISREGDVLDLAADANIVEKSGSWYAYKGAKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSL 342
           GQGREN+K +L +N  I E IE+ +R+  GL A  +
Sbjct: 300 GQGRENAKTYLAQNPLICEEIENQVRELHGLEAQHV 335


>gi|239946715|ref|ZP_04698468.1| protein RecA [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239920991|gb|EER21015.1| protein RecA [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 362

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/351 (64%), Positives = 290/351 (82%), Gaps = 6/351 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K M+  DK +A+ AAL+QI++ YGKG++M+LG + ++   IE VS+GSLGLDIALGIGG 
Sbjct: 18  KFMSNTDKERAIAAALTQIEKSYGKGSVMKLGQRPNV--DIEAVSTGSLGLDIALGIGGV 75

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA+KLGV++  L+I
Sbjct: 76  PKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELII 135

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++    QARLMSQALR
Sbjct: 136 SQPDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALR 195

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ 
Sbjct: 196 KLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEE 255

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + G+QT+VKVVKNK++ PFK  +FDIMYG GIS  GE+IDLGVK  IV+KSG+WFS+   
Sbjct: 256 VIGSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYNNV 315

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           R+GQGREN K +L+E+ +I+  IE ++R+ +  + +  L +    TK++ D
Sbjct: 316 RIGQGRENVKQYLKEHPQISNEIEKIIREKSSKITNINLDQ----TKEEND 362


>gi|323692880|ref|ZP_08107105.1| recA [Clostridium symbiosum WAL-14673]
 gi|323503055|gb|EGB18892.1| recA [Clostridium symbiosum WAL-14673]
          Length = 364

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 219/350 (62%), Positives = 279/350 (79%), Gaps = 6/350 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN  DK KAL+AAL+QI++ YGKG++M+LG  G+    IE V +GSL LDIALG+GG PK
Sbjct: 1   MNRDDKMKALDAALTQIEKAYGKGSVMKLGDSGANMN-IETVPTGSLSLDIALGLGGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVE+YGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YAR +GVD+ NL ISQ
Sbjct: 60  GRIVEVYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYARNIGVDIDNLYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL
Sbjct: 120 PDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+ IS+S C ++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+RR+ ++K    + 
Sbjct: 180 TAVISKSNCTVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRRIETLKQGGEMI 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ RVKVVKNK+A PFK+ EFDIM+G+GIS  G+++DL  K  IV+KSGAW+++ G ++
Sbjct: 240 GNRVRVKVVKNKIAPPFKEAEFDIMFGKGISKEGDILDLAAKEDIVEKSGAWYAYNGSKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           GQGREN+K FL  N E+   IE+ +RQ  GL AD     PA +T +  DK
Sbjct: 300 GQGRENAKNFLLANQELCAEIETKVRQKYGL-ADG----PAGDTAEKKDK 344


>gi|126046700|gb|ABN73106.1| RecA [Burkholderia sp. 'isolate BCCU3']
          Length = 303

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/304 (70%), Positives = 264/304 (86%), Gaps = 1/304 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ Q
Sbjct: 1   MRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVID
Sbjct: 60  KLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG
Sbjct: 120 SVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFG 179

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+Y
Sbjct: 180 NPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILY 239

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           GEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ +R
Sbjct: 240 GEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIR 299

Query: 333 QNAG 336
           ++ G
Sbjct: 300 ESLG 303


>gi|11387037|sp|Q9RDU0|RECA_PSETO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|6689065|emb|CAB65373.1| recombination enzyme [Pseudomonas tolaasii]
          Length = 352

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/353 (62%), Positives = 278/353 (78%), Gaps = 10/353 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE+IDLGV    V+KSGAW+++ G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            NS  FL +N +IA  +E  +R       D LL   A + K  A+++  D +E
Sbjct: 302 ANSAKFLADNPDIAATLEKQIR-------DKLLTA-APDVKAAANREPVDEME 346


>gi|296802996|gb|ADH51574.1| DNA recombinase [Burkholderia cenocepacia]
          Length = 301

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/300 (71%), Positives = 262/300 (87%), Gaps = 1/300 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299


>gi|157829017|ref|YP_001495259.1| recombinase A [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933742|ref|YP_001650531.1| recombinase A [Rickettsia rickettsii str. Iowa]
 gi|157801498|gb|ABV76751.1| recombinase A [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908829|gb|ABY73125.1| RecA [Rickettsia rickettsii str. Iowa]
          Length = 362

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/336 (66%), Positives = 282/336 (83%), Gaps = 2/336 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K M+  DK +A+ AAL+QI++ YGKG++M+LG +  +   IE VS+GSLGLDIALGIGG 
Sbjct: 18  KFMSNTDKERAIAAALAQIEKSYGKGSVMKLGQRPHV--DIEAVSTGSLGLDIALGIGGV 75

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA+KLGV++  L+I
Sbjct: 76  PKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELII 135

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D L+RS  +D+I+IDSVAAL P++EIEG+MG++    QARLMSQALR
Sbjct: 136 SQPDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALR 195

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ 
Sbjct: 196 KLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEE 255

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + G+QT+VKVVKNK+A PFK  +FDIMYG GIS  GE+IDLGVK  IV+KSG+WFS+K  
Sbjct: 256 VIGSQTKVKVVKNKVAPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYKNV 315

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           R+GQGREN K +L+E+ +I+  IE ++R+ +  + +
Sbjct: 316 RIGQGRENVKQYLKEHPQISNEIEKIIREKSSKITN 351


>gi|156932777|ref|YP_001436693.1| recombinase A [Cronobacter sakazakii ATCC BAA-894]
 gi|166220644|sp|A7MJ38|RECA_ENTS8 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|156531031|gb|ABU75857.1| hypothetical protein ESA_00567 [Cronobacter sakazakii ATCC BAA-894]
          Length = 354

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 209/322 (64%), Positives = 270/322 (83%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQRAGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD++V+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVLVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ + + G++T
Sbjct: 184 KNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGEEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINFYGELVDLGVKHKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N+  FL+EN  +A+ IE  LR
Sbjct: 304 ANATNFLKENKPMADEIEKKLR 325


>gi|37525216|ref|NP_928560.1| recombinase A [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|60393010|sp|Q7N7A6|RECA_PHOLL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|36784643|emb|CAE13543.1| RecA protein (Recombinase A) [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 355

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 214/330 (64%), Positives = 273/330 (82%), Gaps = 6/330 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GS+K+ + + G++T
Sbjct: 184 KSSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKNGEEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+ +GELIDLGVK  +V+K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQIMYGEGINTYGELIDLGVKHKLVEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ----NAG 336
            N+ I+L+E+ E+A  ++  LR+    NAG
Sbjct: 304 ANATIYLKEHPEVATELDKKLREMLLHNAG 333


>gi|149911455|ref|ZP_01900072.1| putative RecA protein [Moritella sp. PE36]
 gi|149805486|gb|EDM65493.1| putative RecA protein [Moritella sp. PE36]
          Length = 346

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/324 (66%), Positives = 269/324 (83%), Gaps = 2/324 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E VS+GSL LDIALG GG P GRIV
Sbjct: 4   NKEKALAAALGQIEKQFGKGSIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G  CAF+DAEHALD IYA KLGVD+  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLEVIASAQREGKVCAFIDAEHALDPIYAGKLGVDVNELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDML RSGAVDIIVIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEITDMLARSGAVDIIVIDSVAALTPKAEIEGNMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  + +FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+KD D ITGN+T
Sbjct: 182 KTSNTMCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDGDEITGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PF+Q EF I+YG+G +  GEL+DLGVK  +++K+GAW+S+KG ++GQG+
Sbjct: 242 RVKVVKNKIAAPFRQAEFQILYGKGFNRNGELVDLGVKEKLIEKAGAWYSYKGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQN 334
             +  +L +N +IA  I+ ++R N
Sbjct: 302 AKASQYLADNPKIAAEIDGMIRAN 325


>gi|44981|emb|CAA35247.1| RecA protein [Neisseria gonorrhoeae]
          Length = 348

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 220/328 (67%), Positives = 277/328 (84%), Gaps = 3/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           DKSKAL AAL+QI++ +GKGAIM++ GSQ    E +EV+S+GSLGLD+ALG+GG  +GRI
Sbjct: 4   DKSKALAAALAQIEKSFGKGAIMKMDGSQQE--ENLEVISTGSLGLDLALGVGGLRRGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEI+GPESSGKTTL L  +AQ QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDT
Sbjct: 62  VEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSG +D++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  
Sbjct: 122 GEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGH 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR GSIK  + + GN+
Sbjct: 182 IKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNE 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+GVK  I++KSGAW+S+ G ++GQG
Sbjct: 242 TRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           ++N +++L+EN EI++ I++ +R   G+
Sbjct: 302 KDNVRVWLKENPEISDEIDAKIRALNGV 329


>gi|187779003|ref|ZP_02995476.1| hypothetical protein CLOSPO_02598 [Clostridium sporogenes ATCC
           15579]
 gi|187772628|gb|EDU36430.1| hypothetical protein CLOSPO_02598 [Clostridium sporogenes ATCC
           15579]
          Length = 355

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/327 (65%), Positives = 273/327 (83%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KA+EAA+ QI++ +GKG+IM+LG + SI   +E +S+GSL LDIALGIGG P+GRI+
Sbjct: 11  EKLKAIEAAMGQIEKQFGKGSIMKLG-EDSIL-NVESISTGSLDLDIALGIGGVPRGRII 68

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTT+ALH +A++QK GG  AF+DAEHALD  YAR LGVD+ NL++SQPDTG
Sbjct: 69  EIFGPESSGKTTVALHILAEAQKIGGAAAFIDAEHALDPSYARNLGVDIDNLIVSQPDTG 128

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ LVRSGAVD+IV+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL  SI
Sbjct: 129 EQALEITEALVRSGAVDVIVVDSVAALVPRAEIEGEMGDTHVGLQARLMSQALRKLAGSI 188

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SKC+ +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+RR+ SIK  D I GN+T
Sbjct: 189 NKSKCVAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRRIDSIKQGDQILGNRT 248

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+ KNK+A PFK  EFDIMY EGIS  G ++D+GV+  +V+KSG+WFS+K  RLGQGR
Sbjct: 249 RVKINKNKVAPPFKMAEFDIMYNEGISKVGNILDVGVREELVEKSGSWFSYKDTRLGQGR 308

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K FL++N+ IA  IE+ +R+   L
Sbjct: 309 ENAKQFLKDNMNIALEIENTIRKKHDL 335


>gi|330959233|gb|EGH59493.1| recombinase A [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 354

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 219/341 (64%), Positives = 273/341 (80%), Gaps = 10/341 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE++DL V    V+KSGAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYLNGEIVDLAVLHGFVEKSGAWYSYQGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
            NS  FL +N EI + +E  +R       D LL  P ++TK
Sbjct: 302 ANSAKFLADNPEICKALEKQIR-------DKLLT-PGVDTK 334


>gi|254524001|ref|ZP_05136056.1| protein RecA [Stenotrophomonas sp. SKA14]
 gi|219721592|gb|EED40117.1| protein RecA [Stenotrophomonas sp. SKA14]
          Length = 366

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/325 (66%), Positives = 275/325 (84%), Gaps = 4/325 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI++ +GKG++M++G +  + E +E + +GSL LDIALGIGG PKGR+V
Sbjct: 25  NKKRALAAALGQIEKQFGKGSVMRMGDR--VVEPVEAIPTGSLMLDIALGIGGLPKGRVV 82

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 83  EIYGPESSGKTTLTLQAIAECQKLGGTAAFIDAEHALDPIYAGKLGVNVDDLLLSQPDTG 142

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VDI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 143 EQALEIADMLVRSGSVDILVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 202

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  +++FINQ+RMKIGVM    SPETTTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 203 KRSNTLVIFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 262

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELID+GV+A +V+K+GAW+S+  +R+GQ
Sbjct: 263 QTKIKVVKNKLAPPFKQVITEILYGEGISREGELIDMGVEAKLVEKAGAWYSYGEERIGQ 322

Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333
           G++N++ +LR+N  +A  +E+ LR+
Sbjct: 323 GKDNARGYLRDNPTVAAKLEAELRE 347


>gi|298368701|ref|ZP_06980019.1| recombinase A [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282704|gb|EFI24191.1| recombinase A [Neisseria sp. oral taxon 014 str. F0314]
          Length = 348

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 219/331 (66%), Positives = 277/331 (83%), Gaps = 3/331 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +KSKAL AAL+QI++ +GKG+IM++ GSQ    E ++V+S+GSLG+D+ALG+GG P+GR+
Sbjct: 4   EKSKALAAALAQIEKNFGKGSIMKMDGSQQE--ENLDVISTGSLGVDLALGVGGLPRGRV 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEI+GPESSGKTTL L  IAQ QK GG CAF+DAEHA D IYARKLGV ++ L +SQPDT
Sbjct: 62  VEIFGPESSGKTTLCLEAIAQCQKNGGICAFIDAEHAFDPIYARKLGVKVEELYLSQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSG VD++V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  
Sbjct: 122 GEQALEICDTLVRSGGVDMVVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGH 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I R+  ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G IK  D + GN+
Sbjct: 182 IKRTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGQIKKGDDVIGNE 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           T+VKV+KNK+A PF+Q EFDI+YGEG+S+ GELIDLGVK  IV+KSGAW+S+ G ++GQG
Sbjct: 242 TKVKVIKNKVAPPFRQAEFDILYGEGVSWEGELIDLGVKYDIVEKSGAWYSYNGAKIGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           ++N +++L+EN EIA  I++ +R   G+  D
Sbjct: 302 KDNVRVWLKENPEIANEIDAKIRAAVGINVD 332


>gi|269213471|ref|ZP_05982028.2| protein RecA [Neisseria cinerea ATCC 14685]
 gi|269146183|gb|EEZ72601.1| protein RecA [Neisseria cinerea ATCC 14685]
          Length = 348

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 217/328 (66%), Positives = 276/328 (84%), Gaps = 3/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           DKSKAL AAL+QI++ +GKG+IM++ GSQ    E +EV+S+GSLGLD+ALG+GG P+GRI
Sbjct: 4   DKSKALAAALAQIEKSFGKGSIMKMDGSQQE--ENLEVISTGSLGLDLALGVGGLPRGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEI+GPESSGKTTL L  +AQ QK GG CAF+DAEHA D +YARKLGV ++ L +SQPDT
Sbjct: 62  VEIFGPESSGKTTLCLEAVAQCQKDGGVCAFIDAEHAFDPVYARKLGVKVEELYLSQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSG VD++V+DSVAAL P+AEIEGDMG+S  G+ ARLMSQALRKLT  
Sbjct: 122 GEQALEICDTLVRSGGVDMVVVDSVAALVPKAEIEGDMGDSHVGLHARLMSQALRKLTGH 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR G IK  + + GN+
Sbjct: 182 IKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRAGQIKKGEEVIGNE 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKV+KNK+A PF+Q EFDI+YGEG+S+ GELID+GVK  I++KSGAW+S+ G ++GQG
Sbjct: 242 TRVKVIKNKVAPPFRQAEFDILYGEGVSWEGELIDIGVKNDIINKSGAWYSYNGAKIGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           ++N +++L+EN E+A+ I++ +R   G+
Sbjct: 302 KDNVRVWLKENPEVADEIDAKIRALNGV 329


>gi|266619254|ref|ZP_06112189.1| protein RecA [Clostridium hathewayi DSM 13479]
 gi|288869251|gb|EFD01550.1| protein RecA [Clostridium hathewayi DSM 13479]
          Length = 325

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 213/326 (65%), Positives = 271/326 (83%), Gaps = 1/326 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN  DK KAL+AA++QI++ YGKG++M+LG  GS+   +E + +GSL LDIALG+GG PK
Sbjct: 1   MNKDDKLKALDAAITQIEKAYGKGSVMKLGD-GSVNMNVETIPTGSLSLDIALGLGGIPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTT+ALH IA+ QK GG   F+DAEHALD +YA+K+GVD+ NL ISQ
Sbjct: 60  GRVVEIYGPESSGKTTVALHMIAEVQKRGGIAGFIDAEHALDPVYAKKIGVDIDNLYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT+ +VRSGAVDII++DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL
Sbjct: 120 PDNGEQALEITETMVRSGAVDIIIVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T  IS+S C ++FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+DIRR+ S+K    + 
Sbjct: 180 TGVISKSNCTVLFINQLREKVGVMFGNPETTTGGRALKFYASVRMDIRRIESLKQGGEVV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ RVKVVKNK+A PFK+ EFDIM+G GIS  G+++DL VK  IV+KSGAWF++ G ++
Sbjct: 240 GNRVRVKVVKNKIAPPFKEAEFDIMFGRGISKEGDVLDLAVKEDIVEKSGAWFAYGGAKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332
           GQGREN+KI+L++N  + E IE+ +R
Sbjct: 300 GQGRENAKIYLQDNPAVCEEIENKVR 325


>gi|20522233|sp|Q92GE1|RECA_RICCN RecName: Full=Protein RecA; AltName: Full=Recombinase A
          Length = 343

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/334 (66%), Positives = 281/334 (84%), Gaps = 2/334 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+  DK +A+ AAL+QI++ YGKG++M+LG +  +   IE VS+GSLGLDIALGIGG PK
Sbjct: 1   MSNTDKERAIAAALAQIEKSYGKGSVMKLGQRPHV--DIEAVSTGSLGLDIALGIGGVPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA+KLGV++  L+ISQ
Sbjct: 59  GRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELIISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D L+RS  +D+I+IDSVAAL P++EIEG+MG++    QARLMSQALRKL
Sbjct: 119 PDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ + 
Sbjct: 179 TASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEEVI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G+QT+VKVVKNK++ PFK  +FDIMYG GIS  GE+IDLGVK  IV+KSG+WFS+K  R+
Sbjct: 239 GSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYKNVRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           GQGREN K +L+E+ +I+  IE ++R+ +  + +
Sbjct: 299 GQGRENVKQYLKEHPQISNEIEKIIREKSSKITN 332


>gi|238650602|ref|YP_002916454.1| recombinase A [Rickettsia peacockii str. Rustic]
 gi|259563344|sp|C4K1F5|RECA_RICPU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238624700|gb|ACR47406.1| recombinase A [Rickettsia peacockii str. Rustic]
          Length = 343

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/334 (66%), Positives = 281/334 (84%), Gaps = 2/334 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+  DK +A+ AAL+QI++ YGKG++M+LG +  +   IE VS+GSLGLDIALGIGG PK
Sbjct: 1   MSNTDKERAIAAALAQIEKSYGKGSVMKLGQRPHV--DIEAVSTGSLGLDIALGIGGVPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA+KLGV++  L+ISQ
Sbjct: 59  GRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIAELIISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D L+RS  +D+I+IDSVAAL P++EIEG+MG++    QARLMSQALRKL
Sbjct: 119 PDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ + 
Sbjct: 179 TASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEEVI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G+QT+VKVVKNK++ PFK  +FDIMYG GIS  GE+IDLGVK  IV+KSG+WFS+K  R+
Sbjct: 239 GSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYKNVRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           GQGREN K +L+E+ +I+  IE ++R+ +  + +
Sbjct: 299 GQGRENVKQYLKEHPQISNEIEKIIREKSSKITN 332


>gi|66044626|ref|YP_234467.1| recombinase A [Pseudomonas syringae pv. syringae B728a]
 gi|289674623|ref|ZP_06495513.1| recombinase A [Pseudomonas syringae pv. syringae FF5]
 gi|298488240|ref|ZP_07006275.1| RecA protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|302187192|ref|ZP_07263865.1| recombinase A [Pseudomonas syringae pv. syringae 642]
 gi|76363338|sp|Q4ZWP3|RECA_PSEU2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|63255333|gb|AAY36429.1| RecA bacterial DNA recombination protein [Pseudomonas syringae pv.
           syringae B728a]
 gi|298157248|gb|EFH98333.1| RecA protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|330896096|gb|EGH28317.1| recombinase A [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330936774|gb|EGH40938.1| recombinase A [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330950641|gb|EGH50901.1| recombinase A [Pseudomonas syringae Cit 7]
 gi|330968923|gb|EGH68989.1| recombinase A [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 354

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 219/341 (64%), Positives = 273/341 (80%), Gaps = 10/341 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE++DL V    V+KSGAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYLNGEIVDLAVLHGFVEKSGAWYSYQGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
            NS  FL +N EI + +E  +R       D LL  P ++TK
Sbjct: 302 ANSAKFLADNPEICKALEKQIR-------DKLLT-PGVDTK 334


>gi|331269615|ref|YP_004396107.1| recA protein [Clostridium botulinum BKT015925]
 gi|329126165|gb|AEB76110.1| recA protein [Clostridium botulinum BKT015925]
          Length = 348

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 212/327 (64%), Positives = 271/327 (82%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AAL+QI++ +GKG++M+LG +  +   IE +S+GSL LDIALGIGG P+GRI+
Sbjct: 4   EKMKALQAALTQIEKQFGKGSVMKLGEEKVL--NIEAISTGSLSLDIALGIGGIPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTT+ALH +A++QK GGT AF+DAEHALD +YA+ LGVD+ NL++SQPDTG
Sbjct: 62  EIFGPESSGKTTVALHIVAEAQKAGGTAAFIDAEHALDPVYAKALGVDIDNLIVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDIIV+DSVAAL P+AEIEG+MG++  G+QARLMSQALRKLT SI
Sbjct: 122 EQALEICEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLTGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SKC  +FINQ+R K+G+MFG+PETT GG ALKFY+SVRLD+R++  IK  D+  GN+T
Sbjct: 182 NKSKCAAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRKIEIIKQGDAFLGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDIMYG GIS+ G ++D+GV+  I+ KSG+WFS+K  RLGQGR
Sbjct: 242 RVKVVKNKVAPPFKQAEFDIMYGSGISYEGNVLDVGVENEIIQKSGSWFSYKDTRLGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN K FL+EN  I   +E+ +R    L
Sbjct: 302 ENVKQFLKENPNILVEVENQIRAKHNL 328


>gi|34581221|ref|ZP_00142701.1| RecA protein [Rickettsia sibirica 246]
 gi|229587122|ref|YP_002845623.1| recombinase A [Rickettsia africae ESF-5]
 gi|259563343|sp|C3PLP0|RECA_RICAE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|28262606|gb|EAA26110.1| RecA protein [Rickettsia sibirica 246]
 gi|228022172|gb|ACP53880.1| RecA [Rickettsia africae ESF-5]
          Length = 343

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/334 (66%), Positives = 281/334 (84%), Gaps = 2/334 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+  DK +A+ AAL+QI++ YGKG++M+LG +  +   IE VS+GSLGLDIALGIGG PK
Sbjct: 1   MSNTDKERAIAAALAQIEKSYGKGSVMKLGQRPHV--DIEAVSTGSLGLDIALGIGGVPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA+KLGV++  L+ISQ
Sbjct: 59  GRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELIISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D L+RS  +D+I+IDSVAAL P++EIEG+MG++    QARLMSQALRKL
Sbjct: 119 PDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ + 
Sbjct: 179 TASINRTNCIAVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEEVI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G+QT+VKVVKNK++ PFK  +FDIMYG GIS  GE+IDLGVK  IV+KSG+WFS+K  R+
Sbjct: 239 GSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYKNVRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           GQGREN K +L+E+ +I+  IE ++R+ +  + +
Sbjct: 299 GQGRENVKQYLKEHPQISNEIEKIIREKSSKITN 332


>gi|188588142|ref|YP_001920632.1| recombinase A [Clostridium botulinum E3 str. Alaska E43]
 gi|238689703|sp|B2V4I3|RECA_CLOBA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|188498423|gb|ACD51559.1| protein RecA [Clostridium botulinum E3 str. Alaska E43]
          Length = 356

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 217/352 (61%), Positives = 280/352 (79%), Gaps = 3/352 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           ++K KA+E A+ QI++ +GKG++M+LG    +   I+ +S+G L LDIALGIGG PKGRI
Sbjct: 6   INKLKAIENAMGQIEKQFGKGSVMKLGEDSVL--NIDAISTGCLDLDIALGIGGVPKGRI 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH  A++QK GG   F+DAEHALD  YAR LGVD +NL++SQPDT
Sbjct: 64  VEIYGPESSGKTTIALHIAAEAQKKGGAVGFIDAEHALDPSYARNLGVDTENLIVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQ LEI + LVRSGA+D+I++DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL  +
Sbjct: 124 GEQGLEIAEALVRSGAIDVIIVDSVAALVPKAEIEGEMGDSHIGLQARLMSQALRKLAGT 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS++ CI +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLD+RR+ SIK  D I GN+
Sbjct: 184 ISKTNCIAIFINQLREKVGVMFGSPETTTGGRALKFYASVRLDVRRIDSIKQGDGIVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TR+KV KNK+A PFKQ EFDIMY EGIS  G ++D+GVK  IV KSGAWFS+   RLGQG
Sbjct: 244 TRIKVTKNKVAPPFKQAEFDIMYNEGISREGNIVDVGVKEEIVQKSGAWFSYGDIRLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL-VADSLLQEPAINTKDDADKDDTD 360
           REN+K +L+EN E+A +IE+ +R+   L + D++++E +   K   +K+ +D
Sbjct: 304 RENAKQYLKENPEVALDIENQIREKHNLPLMDAVIKETSQEVKGKENKEQSD 355


>gi|253681765|ref|ZP_04862562.1| protein RecA [Clostridium botulinum D str. 1873]
 gi|253561477|gb|EES90929.1| protein RecA [Clostridium botulinum D str. 1873]
          Length = 348

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 213/327 (65%), Positives = 271/327 (82%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AAL+QI++ +GKG++M+LG +  +   IE +S+GSL LDIALGIGG P+GRI+
Sbjct: 4   EKMKALQAALTQIEKQFGKGSVMKLGEEQVL--NIEAISTGSLSLDIALGIGGIPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTT+ALH +A++QK GGT AF+DAEHALD IYA+ LGVD+ NL++SQPDTG
Sbjct: 62  EIFGPESSGKTTVALHIVAEAQKAGGTAAFIDAEHALDPIYAKALGVDIDNLIVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVD+IV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT SI
Sbjct: 122 EQALEICEALVRSGAVDVIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SKC  +FINQ+R K+G+MFG+PETT GG ALKFY+SVRLD+R++  IK  D+  GN+T
Sbjct: 182 NKSKCAAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRKIEIIKQGDAFLGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDIMYG GIS+ G ++D+GV+  I+ KSG+WFS+K  RLGQGR
Sbjct: 242 RVKVVKNKVAPPFKQAEFDIMYGSGISYEGNVLDVGVENEIIQKSGSWFSYKDTRLGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN K FL+EN  I   +E+ +R    L
Sbjct: 302 ENVKQFLKENPNILVEVENQIRAKHNL 328


>gi|330446964|ref|ZP_08310615.1| protein RecA [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491155|dbj|GAA05112.1| protein RecA [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 350

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 213/323 (65%), Positives = 269/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L TIA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLETIAAAQRKGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ +  I+YG+G +  GEL+DLGVK  +V+K+GAW+S+KG ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKQADTQILYGQGFNRNGELVDLGVKHKLVEKAGAWYSYKGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  FL EN E A  IE+ LR+
Sbjct: 302 ANACKFLTENPETAAEIEAKLRE 324


>gi|224551671|gb|ACN54235.1| RecA [Burkholderia sp. FC61]
          Length = 301

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 214/301 (71%), Positives = 263/301 (87%), Gaps = 1/301 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   RKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+Y EGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI
Sbjct: 240 REAIFDILYXEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299

Query: 324 A 324
           A
Sbjct: 300 A 300


>gi|315648061|ref|ZP_07901162.1| recA protein [Paenibacillus vortex V453]
 gi|315276707|gb|EFU40050.1| recA protein [Paenibacillus vortex V453]
          Length = 353

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/353 (63%), Positives = 279/353 (79%), Gaps = 7/353 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  ALE AL QI++ +GKG+IM+LG   S    +E+V SGSL LDIALG GG PKGRI+
Sbjct: 3   DRRAALEMALRQIEKQFGKGSIMKLGE--STHMQVEIVPSGSLALDIALGTGGLPKGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD  YA KLGV++  LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVALHAIAEVQKAGGQAAFIDAEHALDPSYASKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRLD+RR+ SIK  + + GN+T
Sbjct: 181 NKSKTITIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRIESIKMGNDVVGNRT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PFKQ E DIMYGEGIS  G LID+G +  IVDKSGAW+S+ G RLGQGR
Sbjct: 241 RIKVVKNKVAPPFKQAELDIMYGEGISREGSLIDIGTELDIVDKSGAWYSYSGDRLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           EN+K FL+E+ EIA  IE+ +R+ + L   + + EP   + +D ++D+ +  E
Sbjct: 301 ENAKQFLKEHPEIASVIENKIREASNLT--TAVPEP---SAEDKEQDEIEEQE 348


>gi|67459613|ref|YP_247237.1| recombinase A [Rickettsia felis URRWXCal2]
 gi|75535990|sp|Q4UK63|RECA_RICFE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|67005146|gb|AAY62072.1| RecA protein [Rickettsia felis URRWXCal2]
          Length = 343

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/334 (66%), Positives = 282/334 (84%), Gaps = 2/334 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+  DK +A+ AAL+QI++ YGKG++M+LG + +I   IE VS+GSLGLDIALGIGG PK
Sbjct: 1   MSNTDKERAIAAALAQIEKSYGKGSVMKLGQRPNI--DIEAVSTGSLGLDIALGIGGVPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA+KLGV++  L+ISQ
Sbjct: 59  GRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELIISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++    QARLMSQALRKL
Sbjct: 119 PDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+SI+R+ CI VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIRR+GSIKDK+ + 
Sbjct: 179 TASINRTNCITVFINQIRMKIGVMFGNPETTTGGNALKFYASVRIDIRRIGSIKDKEEVI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G+QT+VKVVKNK++ PFK  +FDIMYG GIS  GE+IDLGVK  IV+KSG+WFS+   R+
Sbjct: 239 GSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYNNVRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           GQGREN K +L+E+ +I+  IE ++R+ +  + +
Sbjct: 299 GQGRENVKQYLKEHPQISNEIEKIIREKSSKITN 332


>gi|307264935|ref|ZP_07546497.1| recA protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|326389417|ref|ZP_08210984.1| recA protein [Thermoanaerobacter ethanolicus JW 200]
 gi|306920193|gb|EFN50405.1| recA protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|325994422|gb|EGD52847.1| recA protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 341

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/338 (63%), Positives = 277/338 (81%), Gaps = 2/338 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           +++K KALE A+SQI+R +GKG+IM+LG    +   +EV+ +GSL LDIALG+GG P+GR
Sbjct: 1   MIEKQKALEMAISQIERQFGKGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EI+GPESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPD
Sbjct: 59  IIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL  
Sbjct: 119 TGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
             S+SK I+VFINQ+R K+GVMFG+PETT GG ALKFY+++RLD+R+V +IK  + I GN
Sbjct: 179 VTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D+G    I++KSGAW+S+   RLGQ
Sbjct: 239 RTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILDIGTSIDIIEKSGAWYSYGDIRLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           GREN+K FL+EN EIA+ IE  +R+N  L  + +   P
Sbjct: 299 GRENAKQFLKENKEIADEIERKIRENFNLAYNKIKSSP 336


>gi|229588727|ref|YP_002870846.1| recombinase A [Pseudomonas fluorescens SBW25]
 gi|259563341|sp|C3KDG0|RECA_PSEFS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|229360593|emb|CAY47450.1| recombinase A [Pseudomonas fluorescens SBW25]
          Length = 352

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/353 (62%), Positives = 277/353 (78%), Gaps = 10/353 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE+IDLGV    V+KSGAW+++ G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            NS  FL +N +IA  +E  +R       D LL   A + K  A+++    VE
Sbjct: 302 ANSAKFLADNPDIAATLEKQIR-------DKLLTA-APDVKAAANREPVAEVE 346


>gi|157326947|gb|ABV44586.1| RecA [Burkholderia multivorans]
          Length = 301

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 214/301 (71%), Positives = 264/301 (87%), Gaps = 1/301 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FL EN EI
Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLAENPEI 299

Query: 324 A 324
           A
Sbjct: 300 A 300


>gi|296803076|gb|ADH51614.1| DNA recombinase [Burkholderia contaminans]
          Length = 297

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 214/296 (72%), Positives = 260/296 (87%), Gaps = 1/296 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+
Sbjct: 60  AELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG
Sbjct: 120 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  F
Sbjct: 180 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 239

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           DI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA
Sbjct: 240 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIA 295


>gi|296803020|gb|ADH51586.1| DNA recombinase [Burkholderia contaminans]
          Length = 299

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 212/296 (71%), Positives = 259/296 (87%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
           G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT 
Sbjct: 4   GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTA 63

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL 
Sbjct: 64  AFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALV 123

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTT
Sbjct: 124 PKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTT 183

Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISF 278
           GGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS 
Sbjct: 184 GGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISR 243

Query: 279 FGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
            GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ +R++
Sbjct: 244 QGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIRES 299


>gi|29829034|ref|NP_823668.1| recombinase A [Streptomyces avermitilis MA-4680]
 gi|37537927|sp|Q82KB1|RECA_STRAW RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|29606140|dbj|BAC70203.1| putative recombination protein RecA [Streptomyces avermitilis
           MA-4680]
          Length = 377

 Score =  451 bits (1161), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 213/331 (64%), Positives = 274/331 (82%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M+LG + +  E IEV+ +GS  LD+ALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE+YGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 59  GRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVENGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FL++N ++A  IE  +++  G+
Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKIKEKLGV 329


>gi|218710547|ref|YP_002418168.1| hypothetical protein VS_2596 [Vibrio splendidus LGP32]
 gi|218323566|emb|CAV19787.1| Protein recA (Recombinase A) [Vibrio splendidus LGP32]
          Length = 350

 Score =  451 bits (1161), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 217/338 (64%), Positives = 275/338 (81%), Gaps = 10/338 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 8   NKQKALAAALGQIEKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIV 65

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL L  IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTG
Sbjct: 66  EVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTG 125

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 126 EQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 185

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+T
Sbjct: 186 KQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNET 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +V+K+GAW+S+KG ++GQG+
Sbjct: 246 RIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKNKLVEKAGAWYSYKGDKIGQGK 305

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348
            N+  +LREN E+A  I++ LR+        LL  PA+
Sbjct: 306 ANAGKYLRENPEVALEIDTKLRE--------LLLTPAV 335


>gi|169134993|gb|ACA48492.1| RecA [Burkholderia sp. 'isolate BCCU5']
          Length = 299

 Score =  451 bits (1161), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 214/300 (71%), Positives = 261/300 (87%), Gaps = 1/300 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ Q
Sbjct: 1   MRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVID
Sbjct: 60  KLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG
Sbjct: 120 SVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFG 179

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+Y
Sbjct: 180 NPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILY 239

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           GEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ +R
Sbjct: 240 GEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIR 299


>gi|268593119|ref|ZP_06127340.1| protein RecA [Providencia rettgeri DSM 1131]
 gi|291311389|gb|EFE51842.1| protein RecA [Providencia rettgeri DSM 1131]
          Length = 355

 Score =  451 bits (1161), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/349 (61%), Positives = 282/349 (80%), Gaps = 3/349 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDVALGAGGLPLGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q++G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQRSGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ + I G++T
Sbjct: 184 KTSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKNGEEIIGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+ FGELIDLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINTFGELIDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
            NS  +L+E+ E+A+ I++ LR+   L         A +   DAD+++T
Sbjct: 304 ANSTNYLKEHPEVAQEIDTKLREML-LNHTGEFSSAATDFISDADEEET 351


>gi|71737127|ref|YP_275943.1| recombinase A [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|257487044|ref|ZP_05641085.1| recombinase A [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289625999|ref|ZP_06458953.1| recombinase A [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289651485|ref|ZP_06482828.1| recombinase A [Pseudomonas syringae pv. aesculi str. 2250]
 gi|123747565|sp|Q48F94|RECA_PSE14 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|71557680|gb|AAZ36891.1| recA protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320329643|gb|EFW85632.1| recombinase A [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330868577|gb|EGH03286.1| recombinase A [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330878036|gb|EGH12185.1| recombinase A [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330894630|gb|EGH27291.1| recombinase A [Pseudomonas syringae pv. mori str. 301020]
 gi|330985145|gb|EGH83248.1| recombinase A [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331009316|gb|EGH89372.1| recombinase A [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 354

 Score =  451 bits (1161), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 219/341 (64%), Positives = 273/341 (80%), Gaps = 10/341 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE++DL V    V+KSGAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYLNGEIVDLAVLHGFVEKSGAWYSYQGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
            NS  FL +N EI + +E  +R       D LL  P ++TK
Sbjct: 302 ANSAKFLADNPEICKALEKQIR-------DKLLT-PGVDTK 334


>gi|320323085|gb|EFW79174.1| recombinase A [Pseudomonas syringae pv. glycinea str. B076]
          Length = 354

 Score =  451 bits (1161), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 219/341 (64%), Positives = 273/341 (80%), Gaps = 10/341 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAQAQKIGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE++DL V    V+KSGAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYLNGEIVDLAVLHGFVEKSGAWYSYQGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
            NS  FL +N EI + +E  +R       D LL  P ++TK
Sbjct: 302 ANSAKFLADNPEICKALEKQIR-------DKLLT-PGVDTK 334


>gi|269469106|gb|EEZ80654.1| RecA/RadA recombinase [uncultured SUP05 cluster bacterium]
          Length = 335

 Score =  451 bits (1161), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/322 (67%), Positives = 273/322 (84%), Gaps = 1/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K +AL+AAL+QI + +GKG++M LG + +    IE VS+GSL LDIALGIGG P+GR+VE
Sbjct: 5   KKQALKAALAQIDKQFGKGSVMFLGDENA-HADIEAVSTGSLSLDIALGIGGLPRGRVVE 63

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA+ QK GGT AF+DAEHALD  YA++LGV+  +LLISQPDTGE
Sbjct: 64  IYGPESSGKTTLTLHVIAEMQKLGGTAAFIDAEHALDPQYAKRLGVNTDDLLISQPDTGE 123

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITDMLVRSG+VDI+VIDSVAALTP+AEIEG+MG S  G+QARLMSQALRKLTS+I 
Sbjct: 124 QALEITDMLVRSGSVDIVVIDSVAALTPKAEIEGEMGASHMGLQARLMSQALRKLTSNIK 183

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK  D I GN+TR
Sbjct: 184 KTNTMVIFINQLRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKKGDEILGNETR 243

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV+KNK+A PFKQ EF I+Y +GIS   E+IDLGVK   V+K+GAW+S +G+R+GQG++
Sbjct: 244 VKVLKNKVAPPFKQAEFQILYNQGISRESEIIDLGVKLGFVEKAGAWYSVEGERIGQGKD 303

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
           N++ +L E+ E+++ IE  +R+
Sbjct: 304 NARDYLIEHAELSQKIEGKIRE 325


>gi|261407902|ref|YP_003244143.1| recA protein [Paenibacillus sp. Y412MC10]
 gi|261284365|gb|ACX66336.1| recA protein [Paenibacillus sp. Y412MC10]
          Length = 353

 Score =  451 bits (1161), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/337 (65%), Positives = 272/337 (80%), Gaps = 4/337 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  ALE AL QI++ +GKG+IM+LG   S    +E+V SGSL LDIALG GG P+GRI+
Sbjct: 3   DRRAALEMALRQIEKQFGKGSIMKLGE--STHMQVEIVPSGSLALDIALGTGGLPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD  YA KLGV++  LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVALHAIAEVQKAGGQAAFIDAEHALDPSYANKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVD+IVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQALEIAEALVRSGAVDVIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRLD+RR+ SIK  + + GN+T
Sbjct: 181 NKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRIESIKMGNDVVGNRT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PFKQ E DIMYGEGIS  G LID+G +  IVDKSGAW+S+ G RLGQGR
Sbjct: 241 RIKVVKNKVAPPFKQAELDIMYGEGISREGSLIDIGTELDIVDKSGAWYSYAGDRLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           EN+K FL+EN EIA  IE+ +R+ + L   + + EP+
Sbjct: 301 ENAKQFLKENPEIASVIENKIREASNLT--TAVPEPS 335


>gi|86146338|ref|ZP_01064662.1| recombinase A [Vibrio sp. MED222]
 gi|85835817|gb|EAQ53951.1| recombinase A [Vibrio sp. MED222]
          Length = 346

 Score =  451 bits (1161), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 217/338 (64%), Positives = 275/338 (81%), Gaps = 10/338 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL L  IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+T
Sbjct: 182 KQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +V+K+GAW+S+KG ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKNKLVEKAGAWYSYKGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348
            N+  +LREN E+A  I++ LR+        LL  PA+
Sbjct: 302 ANAGKYLRENPEVALEIDTKLRE--------LLLTPAV 331


>gi|255003895|ref|ZP_05278696.1| recombinase A [Anaplasma marginale str. Virginia]
          Length = 357

 Score =  451 bits (1161), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 211/322 (65%), Positives = 272/322 (84%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AA+SQI+R +G+GAIM+L    +  E ++ VS+GS+ LD ALGIGG PKGRIV
Sbjct: 11  EKQKALDAAISQIERAFGRGAIMKLKQHPA--EKMDSVSTGSIALDAALGIGGLPKGRIV 68

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTLALH IA++QK GG CAF+DAEHALD++YARKLGV++ +L++SQPDTG
Sbjct: 69  EIFGPESSGKTTLALHVIAEAQKQGGNCAFIDAEHALDTVYARKLGVNVGDLIVSQPDTG 128

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL I + LV SGA+D+IV+DSVAALTPRAEIEGDMG+   G+QARL+S ALRKLTS +
Sbjct: 129 EQALHIVEYLVCSGAIDVIVVDSVAALTPRAEIEGDMGDQHMGLQARLLSHALRKLTSVV 188

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++ CILVFINQ+R+KIGV++G+PE TTGG+ALKFY+S+RLDIR+V +IKDKD++ GN T
Sbjct: 189 SKANCILVFINQIRIKIGVIYGNPEVTTGGSALKFYTSIRLDIRKVSAIKDKDNVIGNHT 248

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDI+Y EGIS  GE++D+GVK   V+KSGA +S+   +LGQGR
Sbjct: 249 RVKVVKNKVAPPFKQAEFDIVYNEGISKLGEIVDMGVKFGFVEKSGAHYSYGAVKLGQGR 308

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           EN+K +L+ N ++A  +E  +R
Sbjct: 309 ENAKGYLKSNPDVANELEQKIR 330


>gi|289578367|ref|YP_003476994.1| recA protein [Thermoanaerobacter italicus Ab9]
 gi|297544644|ref|YP_003676946.1| recA protein [Thermoanaerobacter mathranii subsp. mathranii str.
           A3]
 gi|289528080|gb|ADD02432.1| recA protein [Thermoanaerobacter italicus Ab9]
 gi|296842419|gb|ADH60935.1| recA protein [Thermoanaerobacter mathranii subsp. mathranii str.
           A3]
          Length = 341

 Score =  451 bits (1161), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/338 (63%), Positives = 276/338 (81%), Gaps = 2/338 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           +++K KALE A+SQI+R +GKG+IM+LG    +   +EV+ +GSL LDIALG+GG P+GR
Sbjct: 1   MIEKQKALEMAISQIERQFGKGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EI+GPESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPD
Sbjct: 59  IIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL  
Sbjct: 119 TGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
             S+SK I+VFINQ+R K+G+MFG+PETT GG ALKFY+++RLD+R+V  IK  + I GN
Sbjct: 179 VTSKSKTIVVFINQLREKVGIMFGNPETTPGGRALKFYATIRLDVRKVDPIKQGNEIVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D+G    I++KSGAW+S+   RLGQ
Sbjct: 239 RTRVKVVKNKVAPPFKQAEFDIMYGEGISREGSILDIGTSIDIIEKSGAWYSYGDIRLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           GREN+K FL+EN EIA+ IE  +R+N  L  + +   P
Sbjct: 299 GRENAKQFLKENKEIADEIERKIRENFNLAYNKITSSP 336


>gi|253990686|ref|YP_003042042.1| recombinase A [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253782136|emb|CAQ85300.1| Protein recA (Recombinase A) [Photorhabdus asymbiotica]
          Length = 357

 Score =  451 bits (1161), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 212/330 (64%), Positives = 273/330 (82%), Gaps = 6/330 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GS+K+ + + G++T
Sbjct: 184 KSSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKNGEEVIGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+ +GELIDLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQIMYGEGINTYGELIDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ----NAG 336
            N+  +L+E++EIA  ++  LR+    NAG
Sbjct: 304 ANATTYLKEHLEIATELDKKLREMLLHNAG 333


>gi|290476265|ref|YP_003469169.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Xenorhabdus bovienii SS-2004]
 gi|289175602|emb|CBJ82405.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Xenorhabdus bovienii SS-2004]
          Length = 358

 Score =  451 bits (1161), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/333 (64%), Positives = 273/333 (81%), Gaps = 6/333 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P G
Sbjct: 3   NDENKQKALAAALGQIEKQFGKGSIMRLGENRSM--DVETISTGSLSLDIALGAGGLPMG 60

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQP
Sbjct: 61  RIVEIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQP 120

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL 
Sbjct: 121 DTGEQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 180

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++  S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GS+K+ D + G
Sbjct: 181 GNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSVKNGDEVVG 240

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           ++TRVKVVKNK+A+PFKQ EF I+YGEGI+ FGEL+DLGVK  +V+K+GAW+S+ G ++G
Sbjct: 241 SETRVKVVKNKIAAPFKQAEFQILYGEGINTFGELVDLGVKHKMVEKAGAWYSYNGDKIG 300

Query: 308 QGRENSKIFLRENIEIAENIESLLRQ----NAG 336
           QG+ N+ I+L+E+ EI+  ++  LR+    NAG
Sbjct: 301 QGKANATIYLKEHPEISAELDKKLRELLLNNAG 333


>gi|291548053|emb|CBL21161.1| protein RecA [Ruminococcus sp. SR1/5]
          Length = 350

 Score =  451 bits (1161), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 212/342 (61%), Positives = 274/342 (80%), Gaps = 1/342 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALEAAL  I++ +GKG++M+LG   S  + +E V +G L LDIALG+GG PKGRIV
Sbjct: 5   EKQKALEAALGNIEKQFGKGSVMKLGDSSSHMQ-VEAVPTGCLSLDIALGVGGVPKGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YA+ +GVD+ NL ISQPD G
Sbjct: 64  EIYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKSIGVDIDNLYISQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ +VRSGAVDI+++DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT+ I
Sbjct: 124 EQALEITETMVRSGAVDIVIVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTAVI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S C+++FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+D+RRV ++K    + GN T
Sbjct: 184 SKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASVRMDVRRVETLKQGGEMVGNHT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDIM+G GIS  G+++DL  + SIV+KSGAW++++G ++GQGR
Sbjct: 244 RVKVVKNKVAPPFKQAEFDIMFGTGISREGDILDLAAECSIVNKSGAWYAYEGDKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           EN+K+FLRE+ EI + IE  +R +  L       E A+  +D
Sbjct: 304 ENAKLFLREHPEIRDEIEKKVRVHYHLDPADETAEAAVQAED 345


>gi|328885471|emb|CCA58710.1| RecA protein [Streptomyces venezuelae ATCC 10712]
          Length = 378

 Score =  451 bits (1161), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/331 (64%), Positives = 275/331 (83%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G +    E IEV+S+GS  LDIALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRMGDRTQ--EPIEVISTGSTALDIALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 59  GRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FL++N ++A+ IE  +++  G+
Sbjct: 299 GQGKENARNFLKDNPDLADEIERKIKEKLGV 329


>gi|1350566|sp|P48295|RECA_STRVL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|508860|gb|AAB36572.1| RecA protein [Streptomyces venezuelae ATCC 10712]
          Length = 377

 Score =  451 bits (1161), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/331 (64%), Positives = 275/331 (83%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G +    E IEV+S+GS  LDIALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRMGDRTQ--EPIEVISTGSTALDIALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 59  GRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FL++N ++A+ IE  +++  G+
Sbjct: 299 GQGKENARNFLKDNPDLADEIERKIKEKLGV 329


>gi|329922220|ref|ZP_08277937.1| RecA protein [Paenibacillus sp. HGF5]
 gi|328942333|gb|EGG38602.1| RecA protein [Paenibacillus sp. HGF5]
          Length = 356

 Score =  451 bits (1161), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/337 (65%), Positives = 272/337 (80%), Gaps = 4/337 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  ALE AL QI++ +GKG+IM+LG   S    +E+V SGSL LDIALG GG P+GRI+
Sbjct: 6   DRRAALEMALRQIEKQFGKGSIMKLGE--STHMQVEIVPSGSLALDIALGTGGLPRGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD  YA KLGV++  LL+SQPDTG
Sbjct: 64  EVYGPESSGKTTVALHAIAEVQKAGGQAAFIDAEHALDPSYANKLGVNIDELLLSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVD+IVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 124 EQALEIAEALVRSGAVDVIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRLD+RR+ SIK  + + GN+T
Sbjct: 184 NKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRIESIKMGNDVVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PFKQ E DIMYGEGIS  G LID+G +  IVDKSGAW+S+ G RLGQGR
Sbjct: 244 RIKVVKNKVAPPFKQAELDIMYGEGISREGSLIDIGTELDIVDKSGAWYSYAGDRLGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           EN+K FL+EN EIA  IE+ +R+ + L   + + EP+
Sbjct: 304 ENAKQFLKENPEIASVIENKIREASNLT--TAVPEPS 338


>gi|152971553|ref|YP_001336662.1| recombinase A [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|238896150|ref|YP_002920886.1| recombinase A [Klebsiella pneumoniae NTUH-K2044]
 gi|262043944|ref|ZP_06017029.1| recombinase A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|329999037|ref|ZP_08303292.1| RecA protein [Klebsiella sp. MS 92-3]
 gi|166220653|sp|A6TCW1|RECA_KLEP7 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|150956402|gb|ABR78432.1| recombinase A [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|238548468|dbj|BAH64819.1| recombinase A [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|259038708|gb|EEW39894.1| recombinase A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|328538477|gb|EGF64592.1| RecA protein [Klebsiella sp. MS 92-3]
          Length = 352

 Score =  451 bits (1161), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 209/323 (64%), Positives = 271/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN   A+ IE  +R+
Sbjct: 304 ANAITWLKENPAAAKEIEKKVRE 326


>gi|15893105|ref|NP_360819.1| recombinase A [Rickettsia conorii str. Malish 7]
 gi|15620311|gb|AAL03720.1| RecA protein [Rickettsia conorii str. Malish 7]
          Length = 362

 Score =  451 bits (1161), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/336 (66%), Positives = 282/336 (83%), Gaps = 2/336 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K M+  DK +A+ AAL+QI++ YGKG++M+LG +  +   IE VS+GSLGLDIALGIGG 
Sbjct: 18  KFMSNTDKERAIAAALAQIEKSYGKGSVMKLGQRPHV--DIEAVSTGSLGLDIALGIGGV 75

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA+KLGV++  L+I
Sbjct: 76  PKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELII 135

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D L+RS  +D+I+IDSVAAL P++EIEG+MG++    QARLMSQALR
Sbjct: 136 SQPDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALR 195

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ 
Sbjct: 196 KLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEE 255

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + G+QT+VKVVKNK++ PFK  +FDIMYG GIS  GE+IDLGVK  IV+KSG+WFS+K  
Sbjct: 256 VIGSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYKNV 315

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           R+GQGREN K +L+E+ +I+  IE ++R+ +  + +
Sbjct: 316 RIGQGRENVKQYLKEHPQISNEIEKIIREKSSKITN 351


>gi|28871176|ref|NP_793795.1| recA protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213969154|ref|ZP_03397293.1| recombinase A [Pseudomonas syringae pv. tomato T1]
 gi|301383952|ref|ZP_07232370.1| recombinase A [Pseudomonas syringae pv. tomato Max13]
 gi|302064162|ref|ZP_07255703.1| recombinase A [Pseudomonas syringae pv. tomato K40]
 gi|302134752|ref|ZP_07260742.1| recombinase A [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|37537940|sp|Q87XY7|RECA_PSESM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|28854426|gb|AAO57490.1| recA protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213926152|gb|EEB59708.1| recombinase A [Pseudomonas syringae pv. tomato T1]
 gi|330872692|gb|EGH06841.1| recombinase A [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
 gi|330967904|gb|EGH68164.1| recombinase A [Pseudomonas syringae pv. actinidiae str. M302091]
 gi|331016403|gb|EGH96459.1| recombinase A [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 354

 Score =  451 bits (1161), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 219/341 (64%), Positives = 273/341 (80%), Gaps = 10/341 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE++DL V    V+KSGAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYLNGEIVDLAVLHGFVEKSGAWYSYQGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
            NS  FL +N EI + +E  +R       D LL  P ++TK
Sbjct: 302 ANSAKFLADNPEICKALEKQIR-------DKLLT-PGVDTK 334


>gi|296803016|gb|ADH51584.1| DNA recombinase [Burkholderia cenocepacia]
          Length = 300

 Score =  451 bits (1161), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 214/299 (71%), Positives = 261/299 (87%), Gaps = 1/299 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+
Sbjct: 1   SIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IV
Sbjct: 60  LQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM
Sbjct: 120 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 179

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI
Sbjct: 180 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 239

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           +YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 298


>gi|132226|sp|P24542|RECA_METCL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|44204|emb|CAA42101.1| recA protein [Methylomonas clara]
          Length = 342

 Score =  451 bits (1161), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 229/343 (66%), Positives = 286/343 (83%), Gaps = 4/343 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AALSQI++ +GKG+IM++G    I E ++VVS+GSLGLDIALG+GG P+GRI+
Sbjct: 4   NKSKALAAALSQIEKQFGKGSIMRMGD-ADIGEDLQVVSTGSLGLDIALGVGGLPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GG  AF+DA+ ALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLSAIAEMQKLGGVAAFIDADDALDPQYASKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VDI+V+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRKLT +I
Sbjct: 123 EQALEIADMLVRSGSVDIVVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKLTGNI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+  +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR G+IK  D + G++T
Sbjct: 183 KRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGAIKKGDEVIGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV+KNK+A PFKQ EFDIMYGEGIS  GE+I+LG    +V+KSGAW+S+ G+++GQG+
Sbjct: 243 KVKVIKNKVAPPFKQAEFDIMYGEGISRLGEIIELGTNLKLVEKSGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           EN+K FLREN  IA  IE+ +R N+ ++ADS+    A  ++DD
Sbjct: 303 ENAKEFLRENPAIAAEIEAKIRDNSNVLADSMT---AARSEDD 342


>gi|88608011|ref|YP_506414.1| recA protein [Neorickettsia sennetsu str. Miyayama]
 gi|88600180|gb|ABD45648.1| recA protein [Neorickettsia sennetsu str. Miyayama]
          Length = 327

 Score =  451 bits (1160), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 212/330 (64%), Positives = 278/330 (84%), Gaps = 4/330 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +++  AL+  + QI++++GKG+IM    + +    +E +S+GS+GLD ALG GG PKGRI
Sbjct: 1   MNREDALKGVVVQIEKMFGKGSIMTFSQEPA---SVECISTGSIGLDSALG-GGIPKGRI 56

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD +YAR+LGV ++ LLISQPDT
Sbjct: 57  IEIFGPESSGKTTLTLHIIAEAQKNGGTCAFIDAEHALDPVYARRLGVKIEELLISQPDT 116

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D L++SGAVD+IV+DSVAALTP+AEIEG+MG+   G+QARL+SQALRK+T+S
Sbjct: 117 GEQALEIVDSLIKSGAVDVIVVDSVAALTPKAEIEGEMGDLHVGLQARLLSQALRKITAS 176

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +SRS C++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVR+DIR++GSIKDK+ + GNQ
Sbjct: 177 VSRSNCVVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRIDIRKIGSIKDKEDVVGNQ 236

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQ EFDI+Y EGIS  GE+I++GV+  I++K+G+++S+   +LGQG
Sbjct: 237 TRVKVVKNKVAPPFKQAEFDIIYTEGISKLGEIIEIGVRNKIIEKAGSYYSYGDVKLGQG 296

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +EN K FL+EN E+A  +E  +R +  L+A
Sbjct: 297 KENVKQFLKENKELAAELERKVRDSMLLIA 326


>gi|241764843|ref|ZP_04762848.1| recA protein [Acidovorax delafieldii 2AN]
 gi|241365638|gb|EER60362.1| recA protein [Acidovorax delafieldii 2AN]
          Length = 365

 Score =  451 bits (1160), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/316 (68%), Positives = 276/316 (87%), Gaps = 1/316 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG IM+LG +G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 28  QIEKQFGKGTIMRLG-EGEVIEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 86

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGTCAFVDAEHALD  YA+KLGV L +LLISQPDTGEQALEI D LV
Sbjct: 87  TLTLQVIAEMQKQGGTCAFVDAEHALDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLV 146

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD+IV+DSVAALTP+AEIEG+MG++LPG+QARLMSQALRKLT++I ++ C+++FIN
Sbjct: 147 RSGAVDLIVVDSVAALTPKAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFIN 206

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK  D   GN+T+VKVVKNK++ 
Sbjct: 207 QIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSP 266

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PFK  EFDI++GEGIS  GE+ID+GV A +V+K+GAW+++ G+++GQGR+N++ FLREN 
Sbjct: 267 PFKTAEFDILFGEGISREGEIIDMGVNAKVVEKAGAWYAYNGEKIGQGRDNAREFLRENP 326

Query: 322 EIAENIESLLRQNAGL 337
           ++A  IE+ +R++ G+
Sbjct: 327 DLAREIENKVRESLGI 342


>gi|330504207|ref|YP_004381076.1| recombinase A [Pseudomonas mendocina NK-01]
 gi|328918493|gb|AEB59324.1| recombinase A [Pseudomonas mendocina NK-01]
          Length = 347

 Score =  451 bits (1160), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/350 (62%), Positives = 280/350 (80%), Gaps = 7/350 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI++ +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKRALAAALGQIEKQFGKGAVMRMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAEAQKLGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS A+D+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAIDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR G++K+ + + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGAVKEGEEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PF+Q EF I+YG+GI   GE+IDLGV+  +V+KSGAW+S++G ++GQG+
Sbjct: 242 RVKIVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVQQGLVEKSGAWYSYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
            N+  FL +N E+A  IE  +RQ   L+ +S    PA  + DD    + D
Sbjct: 302 ANAAKFLEDNQEVAREIEGQIRQK--LLVNST---PAKASADDLADAEVD 346


>gi|317493954|ref|ZP_07952371.1| recA bacterial DNA recombination protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316918281|gb|EFV39623.1| recA bacterial DNA recombination protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 350

 Score =  451 bits (1160), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/323 (66%), Positives = 268/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI++ +GKG+IM+LG   ++   I+ VS+GSL LD+ALGIGG P GR+V
Sbjct: 4   NKQRALAAALGQIEKQFGKGSIMRLGDTQTL--DIDSVSTGSLSLDVALGIGGLPMGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA +Q  G TCAF+DAEHALD IYA KLGV + +LLISQPDTG
Sbjct: 62  EIFGPESSGKTTLTLSVIASAQAAGKTCAFIDAEHALDPIYAGKLGVQVDDLLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 122 EQALEICDALVRSGAVDVIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IKD D + GN+T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKDGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG GIS   ELIDLGVK  +VDKSGAW+++ G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGAGISKESELIDLGVKHKLVDKSGAWYAYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            NS  +L+EN  I   +++ LR+
Sbjct: 302 SNSMKYLQENPAIRAELDTKLRE 324


>gi|21224115|ref|NP_629894.1| recombinase A [Streptomyces coelicolor A3(2)]
 gi|6225931|sp|O50487|RECA_STRCO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|2687334|emb|CAA15875.1| recombinase A [Streptomyces coelicolor A3(2)]
          Length = 374

 Score =  451 bits (1160), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 213/331 (64%), Positives = 274/331 (82%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G + +  E IEV+ +GS  LD+ALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRMGDRTN--EPIEVIPTGSTALDVALGVGGIPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE+YGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 59  GRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVENGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FL++N ++A  IE  ++Q  G+
Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKIKQKLGV 329


>gi|255066855|ref|ZP_05318710.1| protein RecA [Neisseria sicca ATCC 29256]
 gi|255048930|gb|EET44394.1| protein RecA [Neisseria sicca ATCC 29256]
          Length = 348

 Score =  451 bits (1160), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/331 (65%), Positives = 277/331 (83%), Gaps = 3/331 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +KSKAL AAL+QI++ +GKG+IM++ GSQ    E ++V+S+GSLG+D+ALG+GG P+GR+
Sbjct: 4   EKSKALAAALAQIEKNFGKGSIMKMDGSQQE--ENLDVISTGSLGVDLALGVGGLPRGRV 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEI+GPESSGKTTL L  IAQ QK GG CAF+DAEHA D +YARKLGV ++ L +SQPDT
Sbjct: 62  VEIFGPESSGKTTLCLEAIAQCQKNGGICAFIDAEHAFDPVYARKLGVKVEELYLSQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSG VD++V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  
Sbjct: 122 GEQALEICDTLVRSGGVDMVVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGH 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I R+  ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G IK  D + GN+
Sbjct: 182 IKRTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGQIKKGDDVIGNE 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           T+VKV+KNK+A PF+Q EFDI+YGEG+S+ GELIDLGVK  IV+KSGAW+S+ G ++GQG
Sbjct: 242 TKVKVIKNKVAPPFRQAEFDILYGEGVSWEGELIDLGVKYDIVEKSGAWYSYNGAKIGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           ++N +++L+EN EIA  I++ +R   G+  D
Sbjct: 302 KDNVRVWLKENPEIANEIDAKIRAAVGINID 332


>gi|94967289|ref|YP_589337.1| recA protein [Candidatus Koribacter versatilis Ellin345]
 gi|94549339|gb|ABF39263.1| recA protein [Candidatus Koribacter versatilis Ellin345]
          Length = 361

 Score =  451 bits (1160), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 210/330 (63%), Positives = 283/330 (85%), Gaps = 1/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ ++LE ALSQI++ +GKG+IM+LG++G+I   I V+S+G++  D ALG GGFP+GR+V
Sbjct: 7   ERGRSLELALSQIEKQFGKGSIMKLGAKGAIVP-ISVISTGAISFDAALGTGGFPRGRVV 65

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTT+AL  IA++QK GG  AFVDAEHALD  YARKLGVD++NLL+SQPD G
Sbjct: 66  EIFGPESSGKTTIALQVIAEAQKAGGMAAFVDAEHALDPTYARKLGVDVENLLVSQPDYG 125

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ LV S A+DI+V+DSVAAL P+AE++G+MG+S  G+QARLMSQALRKLT ++
Sbjct: 126 EQALEITEALVSSKAIDILVVDSVAALVPKAELDGEMGDSHMGLQARLMSQALRKLTGTV 185

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S   L+FINQ+R KIGVMFG+PETTTGG ALKFYSSVR+DIRR+ +IKD D++ G++T
Sbjct: 186 SKSGTCLIFINQIREKIGVMFGNPETTTGGRALKFYSSVRVDIRRIAAIKDGDTVIGSRT 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK A+PF++ EFDI+YGEGIS  G+++DL V+A+IV+KSG+WFS+K +R+GQGR
Sbjct: 246 KVKVVKNKTAAPFREAEFDIVYGEGISKEGDMLDLAVEANIVEKSGSWFSYKTERIGQGR 305

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           EN+K FL++N +IA  +E+ +R++ GLV +
Sbjct: 306 ENAKQFLKDNKDIAARVEAEVRKHVGLVKE 335


>gi|319796544|ref|YP_004158184.1| reca protein [Variovorax paradoxus EPS]
 gi|315599007|gb|ADU40073.1| recA protein [Variovorax paradoxus EPS]
          Length = 370

 Score =  451 bits (1160), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 220/315 (69%), Positives = 274/315 (86%), Gaps = 1/315 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG IM+LG +G   E I+VVS+GSLGLDIALG+GG P+GR++EIYGPESSGKTT
Sbjct: 28  IEKQFGKGTIMRLG-EGEALEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTT 86

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA  QK  GTCAFVDAEHALD  YA+KLGV+L +LLISQPDTGEQALEI D LVR
Sbjct: 87  LTLQVIAAMQKQAGTCAFVDAEHALDVQYAQKLGVNLSDLLISQPDTGEQALEIVDSLVR 146

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IVIDSVAALTP+AEIEG+MG+SLPG+QARLMSQALRKLT++I ++ C+++FINQ
Sbjct: 147 SGAVDLIVIDSVAALTPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQ 206

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IK  D   GN+T+VKVVKNK++ P
Sbjct: 207 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGTIKKGDEAIGNETKVKVVKNKVSPP 266

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FK  EFDI++GEGIS  GE+ID+GV A IVDKSGAW+++ G+++GQGR+N++ FLREN E
Sbjct: 267 FKTAEFDILFGEGISREGEVIDMGVTAKIVDKSGAWYAYNGEKIGQGRDNAREFLRENPE 326

Query: 323 IAENIESLLRQNAGL 337
           ++  IE+ +R++ G+
Sbjct: 327 LSREIENKVRESLGI 341


>gi|323483876|ref|ZP_08089253.1| recA [Clostridium symbiosum WAL-14163]
 gi|323402830|gb|EGA95151.1| recA [Clostridium symbiosum WAL-14163]
          Length = 364

 Score =  451 bits (1160), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/350 (62%), Positives = 278/350 (79%), Gaps = 6/350 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN  DK KAL+AAL+QI++ YGKG++M+LG  G+    IE V +GSL LDIALG+GG PK
Sbjct: 1   MNRDDKMKALDAALTQIEKAYGKGSVMKLGDSGANMN-IETVPTGSLSLDIALGLGGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVE+YGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YAR +GVD+ NL ISQ
Sbjct: 60  GRIVEVYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYARNIGVDIDNLYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL
Sbjct: 120 PDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+ IS+S C ++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+RR+ ++K    + 
Sbjct: 180 TAVISKSNCTVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRRIETLKQGGEMI 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ RVKVVKNK+A PFK+ EFDIM+G+GIS  G+++DL  K  IV+KSGAW+++ G ++
Sbjct: 240 GNRVRVKVVKNKIAPPFKEAEFDIMFGKGISKEGDILDLAAKEDIVEKSGAWYAYNGSKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           GQGREN+K FL  N E+   IE+ +RQ  GL AD     PA +  +  DK
Sbjct: 300 GQGRENAKNFLLANQELCAEIETKVRQKYGL-ADG----PAGDAAEKKDK 344


>gi|188534791|ref|YP_001908588.1| Recombinase A [Erwinia tasmaniensis Et1/99]
 gi|238690917|sp|B2VHD6|RECA_ERWT9 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|188029833|emb|CAO97714.1| Recombinase A [Erwinia tasmaniensis Et1/99]
          Length = 355

 Score =  451 bits (1160), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 211/323 (65%), Positives = 269/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++T
Sbjct: 184 KNSGTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+ FGEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQIMYGEGINIFGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  FL+EN  IA  I++ LR+
Sbjct: 304 ANAGNFLKENSAIANEIDAKLRE 326


>gi|237800182|ref|ZP_04588643.1| recombinase A [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331023039|gb|EGI03096.1| recombinase A [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 354

 Score =  451 bits (1160), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 219/341 (64%), Positives = 273/341 (80%), Gaps = 10/341 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE++DL V    V+KSGAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYLNGEIVDLAVLHGFVEKSGAWYSYQGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
            NS  FL +N EI + +E  +R       D LL  P ++TK
Sbjct: 302 ANSAKFLADNPEICKALEKQIR-------DKLLT-PGVDTK 334


>gi|50250475|emb|CAH03857.1| RecA protein [Pseudomonas stutzeri]
          Length = 347

 Score =  451 bits (1160), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/347 (62%), Positives = 279/347 (80%), Gaps = 4/347 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI++ +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKRALAAALGQIEKQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAEAQKMGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDTHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE+IDLGV+  +V+KSGAW+++KG ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYRNGEVIDLGVQQGLVEKSGAWYAYKGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
            N+  +L +N EI   IE  +R    L+  S   +  + T+D AD D
Sbjct: 302 ANAAKYLEDNPEIGREIEQQIRDK--LLVVSGGSKANVVTEDLADAD 346


>gi|59711142|ref|YP_203918.1| recombinase A [Vibrio fischeri ES114]
 gi|197334505|ref|YP_002155292.1| protein RecA [Vibrio fischeri MJ11]
 gi|76363346|sp|Q5E7G6|RECA_VIBF1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226726299|sp|B5FAD0|RECA_VIBFM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|59479243|gb|AAW85030.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Vibrio fischeri ES114]
 gi|197315995|gb|ACH65442.1| protein RecA [Vibrio fischeri MJ11]
          Length = 348

 Score =  451 bits (1160), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 210/323 (65%), Positives = 268/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E VS+GSL LDIALG GG P GRIV
Sbjct: 4   NKKKALAAALGQIEKQFGKGSIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTG
Sbjct: 62  EIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAVDVMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+T
Sbjct: 182 KQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ E  IMYG+G +  GELIDLGVK  +VDK+GAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKQAETQIMYGQGFNREGELIDLGVKHKLVDKAGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  F+REN E+A  ++  LR+
Sbjct: 302 ANASKFMRENTEVAAELDKKLRE 324


>gi|91774925|ref|YP_544681.1| recombinase A [Methylobacillus flagellatus KT]
 gi|123254792|sp|Q1H3U7|RECA_METFK RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|91708912|gb|ABE48840.1| RecA protein [Methylobacillus flagellatus KT]
          Length = 344

 Score =  451 bits (1160), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/336 (66%), Positives = 288/336 (85%), Gaps = 1/336 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++SKAL AALSQI++ +GKG+IM++G    +   I+ VS+GSLGLDIALGIGG P+GRIV
Sbjct: 4   NRSKALAAALSQIEKQFGKGSIMRMGDT-DVAADIQAVSTGSLGLDIALGIGGLPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK GGT AF+DAEHALD +YA+KLGV++ +LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLSVIAQMQKLGGTAAFIDAEHALDPVYAQKLGVNVSDLLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VD++V+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 123 EQALEIADMLVRSGSVDVVVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK  D +TG++T
Sbjct: 183 KRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKKGDEVTGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDI+YGEGIS  GE+I+LGV   +++K+GAW+S+KG+++GQG+
Sbjct: 243 RVKVVKNKVAPPFKQAEFDILYGEGISREGEIIELGVNLKLIEKAGAWYSYKGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           +N++ FLRE+ EIA  I++ +R+++ L   ++   P
Sbjct: 303 DNAREFLREHPEIANEIDAKIREHSNLANAAMTTAP 338


>gi|229577464|ref|YP_001172035.2| recombinase A [Pseudomonas stutzeri A1501]
          Length = 348

 Score =  451 bits (1159), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 212/322 (65%), Positives = 268/322 (83%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI++ +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKRALAAALGQIEKQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAEAQKMGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE+IDLGV+  +V+KSGAW+++KG ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVQQGLVEKSGAWYAYKGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N+  FL +N EI   IE  +R
Sbjct: 302 ANAAKFLEDNPEIGREIEQQIR 323


>gi|6226684|sp|P96185|RECA_XENBV RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|4220426|gb|AAD12585.1| RecA [Xenorhabdus bovienii]
          Length = 358

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/323 (65%), Positives = 269/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGENRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GS+K+ D + G++T
Sbjct: 184 KNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSVKNGDEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+ FGEL+DLGVK  +V+K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINTFGELVDLGVKHKMVEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+ I+L+E+ E++  ++  LR+
Sbjct: 304 ANATIYLKEHPEVSAELDKKLRE 326


>gi|212709393|ref|ZP_03317521.1| hypothetical protein PROVALCAL_00429 [Providencia alcalifaciens DSM
           30120]
 gi|212688305|gb|EEB47833.1| hypothetical protein PROVALCAL_00429 [Providencia alcalifaciens DSM
           30120]
          Length = 355

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 209/322 (64%), Positives = 271/322 (84%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LD+ALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRTM--DVETISTGSLSLDVALGAGGLPLGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q++G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQRSGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ + I G++T
Sbjct: 184 KNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKNGEEIVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+ FGELIDLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINTFGELIDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            NS  +L+E+ E+A+ I++ LR
Sbjct: 304 ANSTTYLKEHPEVAQEIDTKLR 325


>gi|190573723|ref|YP_001971568.1| recombinase A [Stenotrophomonas maltophilia K279a]
 gi|229620028|sp|B2FL31|RECA_STRMK RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|190011645|emb|CAQ45264.1| putative recombinase A [Stenotrophomonas maltophilia K279a]
          Length = 345

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 216/325 (66%), Positives = 274/325 (84%), Gaps = 4/325 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI++ +GKG++M++G +  + E +E + +GSL LDIALGIGG PKGR+V
Sbjct: 4   NKKRALAAALGQIEKQFGKGSVMRMGDR--VVEPVEAIPTGSLMLDIALGIGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAECQKMGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VDI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSGSVDILVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  +++FINQ+RMKIGVM    SPETTTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 182 KRSNTLVIFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELID+GV A +V+K+GAW+S+  +R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQVITEILYGEGISREGELIDMGVDAKLVEKAGAWYSYGEERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333
           G++N++ +LR+N  +A  +E+ LR+
Sbjct: 302 GKDNARGYLRDNPTVAAKLEAELRE 326


>gi|77919999|ref|YP_357814.1| recombinase A [Pelobacter carbinolicus DSM 2380]
 gi|77546082|gb|ABA89644.1| RecA protein [Pelobacter carbinolicus DSM 2380]
          Length = 341

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 212/331 (64%), Positives = 275/331 (83%), Gaps = 1/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   ++ +A++ A+ QI++ +GKG+IM+LG + +I   +  + +G+L LDIALG+GG P+
Sbjct: 1   MTTDNRERAIDLAMGQIEKQFGKGSIMRLG-EDAIVPDVATIPTGALSLDIALGVGGVPR 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTTLALH +A++QK GG  AFVDAEHALD  YARKLGV   +LL+SQ
Sbjct: 60  GRIIEIYGPESSGKTTLALHIVAEAQKKGGIAAFVDAEHALDIHYARKLGVRTDDLLVSQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEIT++LVRSGA+D++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL
Sbjct: 120 PDTGEQALEITEVLVRSGAIDVLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T +I++S C ++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVR+DIR++ ++K    + 
Sbjct: 180 TGTINKSNCCVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRMDIRKIATLKQGQDVI 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G++TRVKVVKNK+A PFK+ EFDIMYG+GIS  G+++DLG  A IVDKSGAW+SF  +R+
Sbjct: 240 GSRTRVKVVKNKIAPPFKEAEFDIMYGQGISREGDVLDLGAAAEIVDKSGAWYSFDSERI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQGREN+K FLRE+ E  + IE  L ++ GL
Sbjct: 300 GQGRENAKQFLREHPETCQTIEDRLLEHYGL 330


>gi|225076519|ref|ZP_03719718.1| hypothetical protein NEIFLAOT_01567 [Neisseria flavescens
           NRL30031/H210]
 gi|241760080|ref|ZP_04758178.1| protein RecA [Neisseria flavescens SK114]
 gi|261380311|ref|ZP_05984884.1| protein RecA [Neisseria subflava NJ9703]
 gi|319638110|ref|ZP_07992874.1| RecA protein [Neisseria mucosa C102]
 gi|224952198|gb|EEG33407.1| hypothetical protein NEIFLAOT_01567 [Neisseria flavescens
           NRL30031/H210]
 gi|241319534|gb|EER55964.1| protein RecA [Neisseria flavescens SK114]
 gi|284796826|gb|EFC52173.1| protein RecA [Neisseria subflava NJ9703]
 gi|317400755|gb|EFV81412.1| RecA protein [Neisseria mucosa C102]
          Length = 348

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 218/331 (65%), Positives = 277/331 (83%), Gaps = 3/331 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +KSKAL AAL+QI++ +GKG+IM++ GSQ    E ++V+S+GSLG+D+ALG+GG P+GR+
Sbjct: 4   EKSKALAAALAQIEKNFGKGSIMKMDGSQQE--ENLDVISTGSLGVDLALGVGGLPRGRV 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEI+GPESSGKTTL L  IAQ QK GG CAF+DAEHA D IYARKLGV ++ L +SQPDT
Sbjct: 62  VEIFGPESSGKTTLCLEAIAQCQKNGGICAFIDAEHAFDPIYARKLGVKVEELYLSQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSG +D++V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  
Sbjct: 122 GEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGH 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I R+  ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G IK  D + GN+
Sbjct: 182 IKRTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGQIKKGDDVIGNE 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           T+VKV+KNK+A PF+Q EFDI+YGEGIS+ GELIDLGVK  IV+KSGAW+S+ G ++GQG
Sbjct: 242 TKVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDLGVKHDIVEKSGAWYSYNGAKIGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           ++N +++L+EN +IA  I++ +R   G+  D
Sbjct: 302 KDNVRVWLKENPDIANEIDAKIRAAVGINVD 332


>gi|313201868|ref|YP_004040526.1| recombination protein RecA [Methylovorus sp. MP688]
 gi|312441184|gb|ADQ85290.1| recA protein [Methylovorus sp. MP688]
          Length = 344

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/336 (66%), Positives = 285/336 (84%), Gaps = 1/336 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AALSQI++ +GKG+IM++G    +   I+ VS+GSLGLDIALGIGG P+GRI+
Sbjct: 4   NKSKALAAALSQIEKQFGKGSIMRMGDT-DVAADIQAVSTGSLGLDIALGIGGLPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK GGT AF+DAEHALD  YA+KLGV++ +LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLSVIAQMQKMGGTAAFIDAEHALDPQYAQKLGVNVSDLLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VDI+V+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 123 EQALEIADMLVRSGSVDIVVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK  D + G++T
Sbjct: 183 KRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKKGDEVIGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDI+YGEGIS  GE+I++GV   +V+KSGAW+S+KG+++GQG+
Sbjct: 243 RVKVVKNKVAPPFKQAEFDILYGEGISREGEIIEMGVNLKLVEKSGAWYSYKGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           +N++ +LRE+ +IA  I++ +R N+ L   ++   P
Sbjct: 303 DNAREYLREHADIANEIDAKIRANSNLAGAAMTVAP 338


>gi|108759616|ref|YP_629645.1| recA protein [Myxococcus xanthus DK 1622]
 gi|108463496|gb|ABF88681.1| recA protein [Myxococcus xanthus DK 1622]
          Length = 363

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/327 (64%), Positives = 276/327 (84%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KA+E A+S ++R +GKG+IM+LG+   +   ++ + +GS+ LDIALG+GG PKGRI+
Sbjct: 6   EKEKAIELAMSAVERQFGKGSIMRLGNDEPMMRDVQAIPTGSISLDIALGVGGVPKGRII 65

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL LH +A++QK GG C +VDAEHALD  YARKLGV   +LL+SQPDTG
Sbjct: 66  EIFGPESSGKTTLCLHIVAEAQKRGGICGYVDAEHALDVGYARKLGVRTDDLLLSQPDTG 125

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI +MLVRSGA+D++V+DSVAAL P+AE+EG+MG++  G+QARLMSQALRKLT +I
Sbjct: 126 EQALEIAEMLVRSGAIDVLVVDSVAALVPKAELEGEMGDAHMGVQARLMSQALRKLTGTI 185

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++S+  ++FINQ+RMKIGVMFG+PETTTGGNALKFY+S RLDIRR+G+IK+ D++ G++T
Sbjct: 186 AKSQTCVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIGAIKNGDNVVGSRT 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK+VEFDIMYG GIS  G+LIDL    +IV+KSG+WFSF G+R+GQGR
Sbjct: 246 RVKVVKNKVAPPFKEVEFDIMYGTGISREGDLIDLASNENIVEKSGSWFSFNGERIGQGR 305

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN K +LRE+ EIA++IE  + +  G+
Sbjct: 306 ENVKEYLREHPEIAKDIEGRVLEKYGI 332


>gi|1350557|sp|P48292|RECA2_MYXXA RecName: Full=Protein RecA 2; AltName: Full=Recombinase A 2
 gi|848996|gb|AAC37001.1| recA2 [Myxococcus xanthus]
          Length = 358

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/327 (64%), Positives = 276/327 (84%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KA+E A+S ++R +GKG+IM+LG+   +   ++ + +GS+ LDIALG+GG PKGRI+
Sbjct: 6   EKEKAIELAMSAVERQFGKGSIMRLGNDEPMMRDVQAIPTGSISLDIALGVGGVPKGRII 65

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL LH +A++QK GG C +VDAEHALD  YARKLGV   +LL+SQPDTG
Sbjct: 66  EIFGPESSGKTTLCLHIVAEAQKRGGICGYVDAEHALDVGYARKLGVRTDDLLLSQPDTG 125

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI +MLVRSGA+D++V+DSVAAL P+AE+EG+MG++  G+QARLMSQALRKLT +I
Sbjct: 126 EQALEIAEMLVRSGAIDVLVVDSVAALVPKAELEGEMGDAHMGVQARLMSQALRKLTGTI 185

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++S+  ++FINQ+RMKIGVMFG+PETTTGGNALKFY+S RLDIRR+G+IK+ D++ G++T
Sbjct: 186 AKSQTCVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIGAIKNGDNVVGSRT 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK+VEFDIMYG GIS  G+LIDL    +IV+KSG+WFSF G+R+GQGR
Sbjct: 246 RVKVVKNKVAPPFKEVEFDIMYGTGISREGDLIDLASNENIVEKSGSWFSFNGERIGQGR 305

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN K +LRE+ EIA++IE  + +  G+
Sbjct: 306 ENVKEYLREHPEIAKDIEGRVLEKYGI 332


>gi|1785950|gb|AAB41053.1| RecA [Aeromonas salmonicida]
          Length = 353

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/353 (62%), Positives = 276/353 (78%), Gaps = 3/353 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM LG   ++   IE +S+GSL LD+ALGIGG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMLLGDSKTM--DIEAISTGSLSLDVALGIGGLPCGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G  CAF+DAEHALD IYA KLGV++ +LLISQ DTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAEAQKKGKVCAFIDAEHALDPIYAAKLGVNVDDLLISQSDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS AVD+I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 122 EQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+ +FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+T
Sbjct: 182 KNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF I YG GIS  GEL+DLGVK  ++DK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVAPPFKQAEFQIFYGVGISKEGELVDLGVKHKLIDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N      EN  +A  +E+ LR+   L  D   ++P +   D+ + +     E
Sbjct: 302 ANVMKLFTENKVMAAEVEARLRELL-LSGDVPAEKPVVADADELEAESEQEFE 353


>gi|294631803|ref|ZP_06710363.1| RecA protein [Streptomyces sp. e14]
 gi|292835136|gb|EFF93485.1| RecA protein [Streptomyces sp. e14]
          Length = 375

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 217/348 (62%), Positives = 278/348 (79%), Gaps = 4/348 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G +    E IEV+ +GS  LD+ALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRMGERSK--EPIEVIPTGSTALDVALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YARKLGVD+ NL++SQ
Sbjct: 59  GRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYARKLGVDIDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTEAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR KVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           GQG+EN++ FL++N ++A  IE  +++  G+      +EPA     DA
Sbjct: 299 GQGKENARNFLKDNPDLANEIERKIKEKLGVGVRP--EEPAAEPGADA 344


>gi|169134997|gb|ACA48494.1| RecA [Burkholderia sp. 'isolate BCCU7']
          Length = 299

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/300 (71%), Positives = 261/300 (87%), Gaps = 1/300 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ Q
Sbjct: 1   MRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVID
Sbjct: 60  KLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG
Sbjct: 120 SVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFG 179

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+Y
Sbjct: 180 NPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILY 239

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           GEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ +R
Sbjct: 240 GEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIR 299


>gi|188025341|ref|ZP_02958304.2| hypothetical protein PROSTU_00007 [Providencia stuartii ATCC 25827]
 gi|188023876|gb|EDU61916.1| hypothetical protein PROSTU_00007 [Providencia stuartii ATCC 25827]
          Length = 366

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 209/323 (64%), Positives = 271/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P GRIV
Sbjct: 17  NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDVALGAGGLPLGRIV 74

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q++G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 75  EIYGPESSGKTTLTLQVIAAAQRSGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 134

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 135 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 194

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ + I G++T
Sbjct: 195 KNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKNGEEIVGSET 254

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+ +GELIDLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 255 RVKVVKNKVAAPFKQAEFQILYGEGINTYGELIDLGVKHKLIEKAGAWYSYNGDKIGQGK 314

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+E+ EIAE ++  LR+
Sbjct: 315 ANATTYLKEHREIAEELDKKLRE 337


>gi|327480125|gb|AEA83435.1| recombinase A [Pseudomonas stutzeri DSM 4166]
          Length = 348

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 212/322 (65%), Positives = 268/322 (83%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI++ +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKRALAAALGQIEKQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAEAQKMGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE+IDLGV+  +V+KSGAW+++KG ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVQQGLVEKSGAWYAYKGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N+  FL +N EI   IE  +R
Sbjct: 302 ANAAKFLEDNPEIGREIEQQIR 323


>gi|296803118|gb|ADH51635.1| DNA recombinase [Burkholderia seminalis]
          Length = 296

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/295 (71%), Positives = 260/295 (88%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAE
Sbjct: 2   IQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIE
Sbjct: 62  HALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 122 GEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALK 181

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+ID
Sbjct: 182 FYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIID 241

Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           LGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ +R++ G+ +
Sbjct: 242 LGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIRESLGVAS 296


>gi|126175318|ref|YP_001051467.1| recombinase A [Shewanella baltica OS155]
 gi|153001639|ref|YP_001367320.1| recombinase A [Shewanella baltica OS185]
 gi|217972430|ref|YP_002357181.1| recombinase A [Shewanella baltica OS223]
 gi|166220677|sp|A3D785|RECA_SHEB5 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166220678|sp|A6WR18|RECA_SHEB8 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|254790445|sp|B8E8U2|RECA_SHEB2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|125998523|gb|ABN62598.1| recA protein [Shewanella baltica OS155]
 gi|151366257|gb|ABS09257.1| recA protein [Shewanella baltica OS185]
 gi|217497565|gb|ACK45758.1| recA protein [Shewanella baltica OS223]
          Length = 355

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/354 (62%), Positives = 278/354 (78%), Gaps = 10/354 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL A L QI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P GRIV
Sbjct: 6   NKEKALAAVLIQIEKQFGKGSIMKLGEDRSM--DVETISTGSLSLDVALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YG+GI+  GEL+DLGV   +++K+GAW+S+KG ++GQGR
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP-AINTKDDADKDDTDNVE 363
            N+  +L EN  IA  I+  LR+        LL  P A+  K DA  +D  ++E
Sbjct: 304 ANAGKYLTENPAIATEIDKTLRE-------LLLSNPSALAAKADASTEDNVDLE 350


>gi|311350335|gb|ADP92366.1| recombinase [Burkholderia cenocepacia]
 gi|311350337|gb|ADP92367.1| recombinase [Burkholderia cenocepacia]
 gi|311350403|gb|ADP92400.1| recombinase [Burkholderia cenocepacia]
 gi|311350405|gb|ADP92401.1| recombinase [Burkholderia cenocepacia]
 gi|311350407|gb|ADP92402.1| recombinase [Burkholderia cenocepacia]
 gi|311350409|gb|ADP92403.1| recombinase [Burkholderia cenocepacia]
          Length = 295

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/296 (72%), Positives = 260/296 (87%), Gaps = 1/296 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIY
Sbjct: 1   KALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQA
Sbjct: 60  GPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+
Sbjct: 120 LEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRT 179

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVK
Sbjct: 180 NCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVK 239

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           VVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG
Sbjct: 240 VVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQG 295


>gi|239818153|ref|YP_002947063.1| recA protein [Variovorax paradoxus S110]
 gi|239804730|gb|ACS21797.1| recA protein [Variovorax paradoxus S110]
          Length = 375

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 218/315 (69%), Positives = 275/315 (87%), Gaps = 1/315 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG IM+LG +G   E ++VVS+GSLGLDIALG+GG P+GR++EIYGPESSGKTT
Sbjct: 28  IEKQFGKGTIMRLG-EGEALEDVQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTT 86

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IAQ QK  GTCAFVDAEHALD  YA+KLGV+L +LLISQPDTGEQALEI D LVR
Sbjct: 87  LTLQVIAQMQKQAGTCAFVDAEHALDVQYAQKLGVNLSDLLISQPDTGEQALEIVDSLVR 146

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AEIEG+MG+SLPG+QARLMSQALRKLT++I ++ C+++FINQ
Sbjct: 147 SGAVDLIVVDSVAALTPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQ 206

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IK  D   GN+T+VKVVKNK++ P
Sbjct: 207 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGTIKKGDEAIGNETKVKVVKNKVSPP 266

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FK  EFDI++GEGIS  GE+ID+GV A I+DKSGAW+++ G+++GQGR+N++ FLREN E
Sbjct: 267 FKTAEFDILFGEGISREGEIIDMGVNAKILDKSGAWYAYNGEKIGQGRDNAREFLRENPE 326

Query: 323 IAENIESLLRQNAGL 337
           ++  IE+ +R++ G+
Sbjct: 327 LSREIENKVRESLGI 341


>gi|323496142|ref|ZP_08101202.1| recombinase A [Vibrio sinaloensis DSM 21326]
 gi|323318886|gb|EGA71837.1| recombinase A [Vibrio sinaloensis DSM 21326]
          Length = 347

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 216/345 (62%), Positives = 276/345 (80%), Gaps = 10/345 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ E  I+YG G +  GELIDLGVK  +V+K+GAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKQAETQILYGAGFNREGELIDLGVKHKLVEKAGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            N+  FLREN + A+ I++ LR+        +L  PA    DDA+
Sbjct: 302 ANAGKFLRENPQAAQAIDAKLRE--------MLLSPAEVQPDDAE 338


>gi|253999897|ref|YP_003051960.1| recombinase A [Methylovorus sp. SIP3-4]
 gi|253986576|gb|ACT51433.1| recA protein [Methylovorus sp. SIP3-4]
          Length = 344

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/336 (66%), Positives = 285/336 (84%), Gaps = 1/336 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AALSQI++ +GKG+IM++G    +   I+ VS+GSLGLDIALGIGG P+GRI+
Sbjct: 4   NKSKALAAALSQIEKQFGKGSIMRMGDT-DVAADIQAVSTGSLGLDIALGIGGLPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK GGT AF+DAEHALD  YA+KLGV++ +LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLSVIAQMQKMGGTAAFIDAEHALDPQYAQKLGVNVSDLLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VDI+V+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 123 EQALEIADMLVRSGSVDIVVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK  D + G++T
Sbjct: 183 KRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKKGDEVIGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDI+YGEGIS  GE+I++GV   +V+KSGAW+S+KG+++GQG+
Sbjct: 243 RVKVVKNKVAPPFKQAEFDILYGEGISREGEIIEMGVNLKLVEKSGAWYSYKGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           +N++ +LRE+ +IA  I++ +R N+ L   ++   P
Sbjct: 303 DNAREYLREHADIASEIDAKIRANSNLAGAAMTVAP 338


>gi|299530904|ref|ZP_07044318.1| recA protein [Comamonas testosteroni S44]
 gi|298721125|gb|EFI62068.1| recA protein [Comamonas testosteroni S44]
          Length = 369

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 224/342 (65%), Positives = 285/342 (83%), Gaps = 7/342 (2%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG IM+LG +G   E I+VVS+GSLGLDIALG+GG P+GR++EIYGPESSGKT
Sbjct: 24  QIEKQFGKGTIMKLG-EGEAIEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKT 82

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGTCAF+DAEHALD+ YA+KLGV+L ++LISQPDTGEQALEI D LV
Sbjct: 83  TLTLQVIAEMQKQGGTCAFIDAEHALDTSYAQKLGVNLSDVLISQPDTGEQALEICDSLV 142

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD+IVIDSVAALTP+AEIEG+MG++LPG+QARLMSQALRKLT++I ++ C+++FIN
Sbjct: 143 RSGAVDLIVIDSVAALTPKAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFIN 202

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK  D   GN+T+VKVVKNK++ 
Sbjct: 203 QIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSP 262

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PFK  EFDI++GEGIS  GE++D+GV A I++KSGAW+++ G+++GQGR+NS+ FLREN 
Sbjct: 263 PFKTAEFDILFGEGISREGEILDMGVNAKILEKSGAWYAYNGEKIGQGRDNSREFLRENP 322

Query: 322 EIAENIESLLRQNAGLV------ADSLLQEPAINTKDDADKD 357
            +A  IE+ +R++ G+       A +   +PA   K   DKD
Sbjct: 323 ALAIEIENKVRESLGIKLLPVDGAATAEAKPAKGGKGKVDKD 364


>gi|311350399|gb|ADP92398.1| recombinase [Burkholderia metallica]
          Length = 295

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/296 (72%), Positives = 260/296 (87%), Gaps = 1/296 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIY
Sbjct: 1   KALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQA
Sbjct: 60  GPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+
Sbjct: 120 LEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRT 179

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVK
Sbjct: 180 NCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVK 239

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           VVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG
Sbjct: 240 VVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQG 295


>gi|311350339|gb|ADP92368.1| recombinase [Burkholderia vietnamiensis]
          Length = 295

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/296 (72%), Positives = 261/296 (88%), Gaps = 1/296 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIY
Sbjct: 1   KALAAALAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQA
Sbjct: 60  GPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+
Sbjct: 120 LEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRT 179

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVK
Sbjct: 180 NCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVK 239

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           VVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG
Sbjct: 240 VVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQG 295


>gi|157374439|ref|YP_001473039.1| recombinase A [Shewanella sediminis HAW-EB3]
 gi|189039610|sp|A8FST8|RECA_SHESH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|157316813|gb|ABV35911.1| Calcium-transporting ATPase [Shewanella sediminis HAW-EB3]
          Length = 353

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 218/353 (61%), Positives = 277/353 (78%), Gaps = 10/353 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL A L QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKEKALNAVLGQIEKQFGKGSIMKLGENRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G  CAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLEVIAAAQREGKVCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD+D + GN+T
Sbjct: 184 KQTNTMLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDRDEVIGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YG+GI+  GEL+DLGV   +V+K+GAW+S+KG ++GQGR
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGQGINSTGELVDLGVAHKLVEKAGAWYSYKGDKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N+  +L EN  +A+ I+  LR        +LL  PA    D A  D+  ++E
Sbjct: 304 ANAGKYLIENPAVAQEIDVALR--------ALLLTPAAPVADSATGDENIDLE 348


>gi|271501701|ref|YP_003334727.1| recA protein [Dickeya dadantii Ech586]
 gi|270345256|gb|ACZ78021.1| recA protein [Dickeya dadantii Ech586]
          Length = 360

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/323 (65%), Positives = 271/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG+GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGVGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ + + G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGEEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+ FGEL+DLGVK+ +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINTFGELVDLGVKSKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  FL+EN  I+  ++  LR+
Sbjct: 304 ANACNFLKENPAISAELDKKLRE 326


>gi|167037603|ref|YP_001665181.1| recombinase A [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167040264|ref|YP_001663249.1| recombinase A [Thermoanaerobacter sp. X514]
 gi|256750811|ref|ZP_05491696.1| recA protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914348|ref|ZP_07131664.1| recA protein [Thermoanaerobacter sp. X561]
 gi|307724416|ref|YP_003904167.1| recA protein [Thermoanaerobacter sp. X513]
 gi|320116018|ref|YP_004186177.1| recA protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166854504|gb|ABY92913.1| recA protein [Thermoanaerobacter sp. X514]
 gi|166856437|gb|ABY94845.1| recA protein [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256750394|gb|EEU63413.1| recA protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889283|gb|EFK84429.1| recA protein [Thermoanaerobacter sp. X561]
 gi|307581477|gb|ADN54876.1| recA protein [Thermoanaerobacter sp. X513]
 gi|319929109|gb|ADV79794.1| recA protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 341

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 215/338 (63%), Positives = 277/338 (81%), Gaps = 2/338 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           +++K KALE A+SQI+R +GKG+IM+LG    +   +EV+ +GSL LDIALG+GG P+GR
Sbjct: 1   MIEKQKALEMAISQIERQFGKGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EI+GPESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPD
Sbjct: 59  IIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL  
Sbjct: 119 TGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
             S+SK I+VFINQ+R K+GV+FG+PETT GG ALKFY+++RLD+R+V +IK  + I GN
Sbjct: 179 VTSKSKTIVVFINQLREKVGVLFGNPETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D+G    I++KSGAW+S+   RLGQ
Sbjct: 239 RTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILDIGTSIDIIEKSGAWYSYGDIRLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           GREN+K FL+EN EIA+ IE  +R+N  L  + +   P
Sbjct: 299 GRENAKQFLKENKEIADEIERKIRENFNLAYNKIKSSP 336


>gi|311350395|gb|ADP92396.1| recombinase [Burkholderia lata]
 gi|311350397|gb|ADP92397.1| recombinase [Burkholderia lata]
          Length = 295

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/296 (72%), Positives = 260/296 (87%), Gaps = 1/296 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIY
Sbjct: 1   KALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQA
Sbjct: 60  GPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+
Sbjct: 120 LEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRT 179

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVK
Sbjct: 180 NCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVK 239

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           VVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG
Sbjct: 240 VVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQG 295


>gi|312884635|ref|ZP_07744338.1| recombinase A [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367727|gb|EFP95276.1| recombinase A [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 348

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 215/344 (62%), Positives = 276/344 (80%), Gaps = 10/344 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIKD D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKQAETQILYGQGFNREGELIDLGVKHKLIEKAGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
            N+  FLREN E ++ I+S LRQ        +L  P    +DDA
Sbjct: 302 ANAGKFLRENPEASQAIDSKLRQ--------MLLSPVELQEDDA 337


>gi|242238443|ref|YP_002986624.1| recA protein [Dickeya dadantii Ech703]
 gi|242130500|gb|ACS84802.1| recA protein [Dickeya dadantii Ech703]
          Length = 363

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 211/323 (65%), Positives = 270/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG+GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGVGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIKD + + G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKDGEEVIGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+ +GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINTYGELVDLGVKFKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  FL+EN  I+  I+  LR+
Sbjct: 304 SNACNFLKENPAISTEIDKKLRE 326


>gi|90580349|ref|ZP_01236156.1| recombinase A [Vibrio angustum S14]
 gi|90438651|gb|EAS63835.1| recombinase A [Vibrio angustum S14]
          Length = 349

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/322 (66%), Positives = 268/322 (83%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L TIA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLETIAAAQRKGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +V+K+GAW+S++G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKQAETQILYGQGFNRNGELIDLGVKHKLVEKAGAWYSYQGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            NS  +L EN  IA  IE+ LR
Sbjct: 302 ANSCKYLVENPAIAAEIETKLR 323


>gi|311350349|gb|ADP92373.1| recombinase [Burkholderia multivorans]
 gi|311350353|gb|ADP92375.1| recombinase [Burkholderia multivorans]
 gi|311350357|gb|ADP92377.1| recombinase [Burkholderia multivorans]
 gi|311350359|gb|ADP92378.1| recombinase [Burkholderia multivorans]
 gi|311350361|gb|ADP92379.1| recombinase [Burkholderia multivorans]
 gi|311350363|gb|ADP92380.1| recombinase [Burkholderia multivorans]
 gi|311350365|gb|ADP92381.1| recombinase [Burkholderia multivorans]
 gi|311350367|gb|ADP92382.1| recombinase [Burkholderia multivorans]
          Length = 295

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/296 (72%), Positives = 261/296 (88%), Gaps = 1/296 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIY
Sbjct: 1   KALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQA
Sbjct: 60  GPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+
Sbjct: 120 LEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRT 179

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVK
Sbjct: 180 NCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVK 239

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           VVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG
Sbjct: 240 VVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQG 295


>gi|260221889|emb|CBA30904.1| Protein recA [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 340

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 212/318 (66%), Positives = 273/318 (85%), Gaps = 2/318 (0%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           ++QI++ +GKG IM+LG +G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSG
Sbjct: 1   MAQIEKQFGKGTIMRLG-EGEVIEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSG 59

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTL L  +A+ QK GG CAFVDAEHALD  YA+KLGV+L++LLISQPDTGEQALEI D 
Sbjct: 60  KTTLTLQVVAEMQKQGGQCAFVDAEHALDIQYAQKLGVNLQDLLISQPDTGEQALEIVDS 119

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           LVRSGAVD+I++DSVAALTP+AE+EG+MG+SLPG+QARLMSQALRKLT+ I ++ C+++F
Sbjct: 120 LVRSGAVDLIIVDSVAALTPKAELEGEMGDSLPGLQARLMSQALRKLTAHIKKTNCMVIF 179

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           INQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK  +   GN+T+VKVVK   
Sbjct: 180 INQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGEDSIGNETKVKVVKTSQ 239

Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
            S  +  EFDI++GEGIS  GE+ID+GV A I++KSGAW++++G+++GQGR+N++ FLRE
Sbjct: 240 PS-VQTAEFDILFGEGISRHGEIIDMGVNAGILEKSGAWYAYQGEKIGQGRDNAREFLRE 298

Query: 320 NIEIAENIESLLRQNAGL 337
           N E++  IE+ +R N G+
Sbjct: 299 NPELSVEIENKVRANLGI 316


>gi|330975359|gb|EGH75425.1| recombinase A [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 354

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 218/341 (63%), Positives = 272/341 (79%), Gaps = 10/341 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE++DL V     +KSGAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYLNGEIVDLAVLHGFFEKSGAWYSYQGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
            NS  FL +N EI + +E  +R       D LL  P ++TK
Sbjct: 302 ANSAKFLADNPEICKALEKQIR-------DKLLT-PGVDTK 334


>gi|310766670|gb|ADP11620.1| Recombinase A [Erwinia sp. Ejp617]
          Length = 355

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/322 (65%), Positives = 268/322 (83%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++T
Sbjct: 184 KNSGTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+ +GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQIMYGEGINIYGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N+  FL+EN  IA  I++ LR
Sbjct: 304 ANAGNFLKENPAIANEIDAKLR 325


>gi|256784806|ref|ZP_05523237.1| recombinase A [Streptomyces lividans TK24]
 gi|289768695|ref|ZP_06528073.1| RecA protein [Streptomyces lividans TK24]
 gi|1350565|sp|P48294|RECA_STRLI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|416193|emb|CAA53674.1| reca peptidase [Streptomyces lividans TK24]
 gi|289698894|gb|EFD66323.1| RecA protein [Streptomyces lividans TK24]
 gi|744164|prf||2014251A recA peptidase
          Length = 374

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 213/331 (64%), Positives = 274/331 (82%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G + +  E IEV+ +GS  LD+ALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRMGDRTN--EPIEVIPTGSTALDVALGVGGIPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE+YGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 59  GRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVENGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FL++N ++A  IE  ++Q  G+
Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKIKQKLGV 329


>gi|227590|prf||1707271C recA gene
          Length = 355

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/323 (65%), Positives = 268/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P+GRIV
Sbjct: 5   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--NVETISTGSLYLDVALGAGGLPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPES GKTTL L  IA +Q+ G  CAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 63  EIYGPESYGKTTLTLQVIAAAQREGKICAFIDAEHALDPIYAQKLGVDIDNLLCSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 123 EQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEIGDSHVGLAARMMSQAMRKLAGNL 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GS+K+ D + G++T
Sbjct: 183 KNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKNGDEVVGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+ FGELIDLGVK  +V+K+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKIAAPFKQAEFQIMYGEGINTFGELIDLGVKHKLVEKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN E+   + + LR+
Sbjct: 303 ANATTYLKENPEMYNELNTKLRE 325


>gi|169134995|gb|ACA48493.1| RecA [Burkholderia sp. 'isolate BCCU6']
          Length = 299

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/300 (71%), Positives = 261/300 (87%), Gaps = 1/300 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ Q
Sbjct: 1   MRMGD-GEAKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVID
Sbjct: 60  KLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG
Sbjct: 120 SVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFG 179

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+Y
Sbjct: 180 NPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILY 239

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           GEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ +R
Sbjct: 240 GEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIR 299


>gi|261346226|ref|ZP_05973870.1| protein RecA [Providencia rustigianii DSM 4541]
 gi|282565534|gb|EFB71069.1| protein RecA [Providencia rustigianii DSM 4541]
          Length = 355

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 207/323 (64%), Positives = 272/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LD+ALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRTM--DVETISTGSLSLDVALGAGGLPLGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q++G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIASAQRSGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ + I G++T
Sbjct: 184 KNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKNGEEIVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+ FGELIDLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINTFGELIDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            NS  +L+E+ ++A+ I++ LR+
Sbjct: 304 ANSTTYLKEHPDVAKEIDTKLRE 326


>gi|89075065|ref|ZP_01161506.1| recombinase A [Photobacterium sp. SKA34]
 gi|89049152|gb|EAR54717.1| recombinase A [Photobacterium sp. SKA34]
          Length = 349

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/322 (66%), Positives = 267/322 (82%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L TIA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLETIAAAQRKGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +V+K+GAW+S++G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKQAETQILYGQGFNRNGELIDLGVKHKLVEKAGAWYSYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            NS  +L EN  IA  IE  LR
Sbjct: 302 ANSCKYLVENPAIAAEIEKKLR 323


>gi|84390149|ref|ZP_00991411.1| recombinase A [Vibrio splendidus 12B01]
 gi|84376803|gb|EAP93678.1| recombinase A [Vibrio splendidus 12B01]
          Length = 346

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 217/338 (64%), Positives = 274/338 (81%), Gaps = 10/338 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL L  IA +Q+ G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTLTLELIAAAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+T
Sbjct: 182 KQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +V+K+GAW+S+KG ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKNKLVEKAGAWYSYKGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348
            NS   LREN EIA  +++ LR+        LL  PA+
Sbjct: 302 SNSCKHLRENPEIALELDTKLRE--------LLLTPAV 331


>gi|311350387|gb|ADP92392.1| recombinase [Burkholderia cenocepacia]
 gi|311350389|gb|ADP92393.1| recombinase [Burkholderia cenocepacia]
 gi|311350391|gb|ADP92394.1| recombinase [Burkholderia cenocepacia]
 gi|311350393|gb|ADP92395.1| recombinase [Burkholderia arboris]
          Length = 295

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/296 (72%), Positives = 260/296 (87%), Gaps = 1/296 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIY
Sbjct: 1   KALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQA
Sbjct: 60  GPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+
Sbjct: 120 LEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRT 179

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVK
Sbjct: 180 NCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVK 239

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           VVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG
Sbjct: 240 VVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQG 295


>gi|212634215|ref|YP_002310740.1| recombinase A [Shewanella piezotolerans WP3]
 gi|226737763|sp|B8CJQ6|RECA_SHEPW RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|212555699|gb|ACJ28153.1| RecA bacterial DNA recombination protein [Shewanella piezotolerans
           WP3]
          Length = 355

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 211/322 (65%), Positives = 268/322 (83%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL A L QI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P GRIV
Sbjct: 6   NKEKALNAVLGQIEKQFGKGSIMKLGEDRSM--DVETISTGSLSLDVALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +QK G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLEVIAAAQKQGKTCAFIDAEHALDPVYAQKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD+D + GN+T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDRDEVIGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YG+GI+  GEL+DLGV   +++KSGAW+++KG ++GQGR
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGQGINSTGELVDLGVVHKLIEKSGAWYAYKGSKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N+  +L EN EI++ IE+ LR
Sbjct: 304 ANAGKYLIENPEISDEIETALR 325


>gi|229828465|ref|ZP_04454534.1| hypothetical protein GCWU000342_00527 [Shuttleworthia satelles DSM
           14600]
 gi|229793059|gb|EEP29173.1| hypothetical protein GCWU000342_00527 [Shuttleworthia satelles DSM
           14600]
          Length = 376

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 207/324 (63%), Positives = 270/324 (83%), Gaps = 1/324 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALEAA++ I++ YG+G++M+LG +GS    +E VS+GS+ LD+ALG+GG PKGRI+
Sbjct: 39  EKQKALEAAITHIEKQYGRGSVMKLG-EGSQRMKVEAVSTGSISLDLALGVGGLPKGRII 97

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTT+ALH +++ QK GG   F+DAEHALD +YAR +GVD+ NL ISQPD G
Sbjct: 98  EIFGPESSGKTTVALHCVSEVQKRGGIAGFIDAEHALDPVYARNIGVDIDNLYISQPDNG 157

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + +VRSGAVDIIV+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLTS +
Sbjct: 158 EQALEIAETMVRSGAVDIIVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTSVV 217

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SR+ CI++FINQ+R KIGVMFG+PETTTGG ALKFY+SVRLD+RR  +IK    + GN T
Sbjct: 218 SRTNCIVIFINQLREKIGVMFGNPETTTGGRALKFYASVRLDVRRTEAIKQGGDVVGNHT 277

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFKQ EFDIM+G+GIS  G+++DL V   I++KSGAW++++G+++GQGR
Sbjct: 278 RVKIVKNKVAPPFKQAEFDIMFGQGISRSGDILDLAVDIDIINKSGAWYAYEGEKIGQGR 337

Query: 311 ENSKIFLRENIEIAENIESLLRQN 334
           EN+K +L E+ E+ E IE L+R +
Sbjct: 338 ENAKKYLEEHPELMERIEQLIRDH 361


>gi|115376627|ref|ZP_01463857.1| RecA protein [Stigmatella aurantiaca DW4/3-1]
 gi|310819426|ref|YP_003951784.1| RecA protein [Stigmatella aurantiaca DW4/3-1]
 gi|115366370|gb|EAU65375.1| RecA protein [Stigmatella aurantiaca DW4/3-1]
 gi|309392498|gb|ADO69957.1| RecA protein [Stigmatella aurantiaca DW4/3-1]
          Length = 360

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/336 (62%), Positives = 279/336 (83%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KA+E A+S ++R +GKG+IM+LG    +   I+ +S+GS+ LDIALG+GG PKGRIV
Sbjct: 6   EKEKAIELAMSAVERQFGKGSIMRLGKDEPLTRDIQAISTGSISLDIALGVGGVPKGRIV 65

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL LH +A++QK GG C ++DAEHALD  YARKLGV   +LL+SQPDTG
Sbjct: 66  EIFGPESSGKTTLCLHIVAEAQKRGGICGYIDAEHALDVGYARKLGVRTDDLLLSQPDTG 125

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI +MLVRSGA+D++V+DSVAAL P+AE+EG+MG++  G+QARLMSQALRKLT +I
Sbjct: 126 EQALEIAEMLVRSGAIDVLVVDSVAALVPKAELEGEMGDAHMGVQARLMSQALRKLTGTI 185

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S+  ++FINQ+RMKIGVMFG+PETTTGGNALKFY+S RLDIRR+G+IK+ +++ G++T
Sbjct: 186 SKSQTCVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIGAIKNGENVVGSRT 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK+VEFDIMYG GIS  G+LIDL    +IV+KSG+WF+FKG+R+GQGR
Sbjct: 246 RVKVVKNKVAPPFKEVEFDIMYGTGISREGDLIDLASNENIVEKSGSWFAFKGERIGQGR 305

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           EN+K +LRE+ +  + IE+ + +  G+   ++   P
Sbjct: 306 ENAKDYLREHPDTYKEIEARVLEKYGVTKPAVAAVP 341


>gi|326203615|ref|ZP_08193479.1| recA protein [Clostridium papyrosolvens DSM 2782]
 gi|325986435|gb|EGD47267.1| recA protein [Clostridium papyrosolvens DSM 2782]
          Length = 348

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 209/326 (64%), Positives = 270/326 (82%), Gaps = 2/326 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           +++K KALE AL QI++ +GKGA+M+LG    +   IE + +GS+ LD+ALG+GG P+GR
Sbjct: 1   MLEKKKALEMALGQIEKQFGKGAVMKLGENSHM--NIESIPTGSMSLDLALGVGGVPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVE++GPESSGKTT+ALH IA++QK GG  AF+DAEHALD +YA+KLGVD++NL++SQPD
Sbjct: 59  IVEVFGPESSGKTTVALHIIAEAQKAGGEAAFIDAEHALDPVYAKKLGVDIENLIVSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEIT+ LVRSGA+DIIVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL  
Sbjct: 119 TGEQALEITEALVRSGAIDIIVIDSVAALVPKAEIDGEMGDSHIGLQARLMSQALRKLAG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            IS+S+   +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+RR+ +IK  + + GN
Sbjct: 179 VISKSRTTAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRRIEAIKQANEVVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFK+ EFDI+YG+GIS  G ++D+ V   IV+KSGAWFS+ GQR+GQ
Sbjct: 239 RTRVKVVKNKVAPPFKEAEFDIVYGQGISREGSILDIAVSMEIVNKSGAWFSYNGQRIGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQN 334
           GREN+K +L+EN  +   IE L+R N
Sbjct: 299 GRENAKQYLKENSAMCSEIEKLIRNN 324


>gi|148978203|ref|ZP_01814733.1| recombinase A [Vibrionales bacterium SWAT-3]
 gi|145962625|gb|EDK27901.1| recombinase A [Vibrionales bacterium SWAT-3]
          Length = 345

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 211/336 (62%), Positives = 275/336 (81%), Gaps = 3/336 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRI 
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMKLGENRTM--DVETISTGSLSLDIALGAGGLPMGRIT 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLELIAAAQRQGKTCAFIDAEHALDPIYARKLGVDIDNLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RK+T ++
Sbjct: 124 EQALEIVDALARSGAVDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKITGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++K+ D + GN+T
Sbjct: 184 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ E  I+YG+G + +GELIDLGVK  +V+K+GAW+S++G ++GQG+
Sbjct: 244 RIKVVKNKIAAPFKQAETQILYGKGFNRYGELIDLGVKNKLVEKAGAWYSYQGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
            N+  ++ EN  IAE ++  LR+   L   +L +EP
Sbjct: 304 ANACKYIEENSHIAEELDKKLRELL-LTPTTLDEEP 338


>gi|744163|prf||2014250A recA-like protein
          Length = 377

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/331 (64%), Positives = 274/331 (82%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G +    E IEV+S+GS  LDIALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRMGDRTQ--EPIEVISTGSTALDIALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 59  GRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALR +
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRNI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FL++N ++A+ IE  +++  G+
Sbjct: 299 GQGKENARNFLKDNPDLADEIERKIKEKLGV 329


>gi|126046689|gb|ABN73104.1| RecA [Burkholderia seminalis]
          Length = 299

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 213/300 (71%), Positives = 261/300 (87%), Gaps = 1/300 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ Q
Sbjct: 1   MRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVID
Sbjct: 60  KLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG
Sbjct: 120 SVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFG 179

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+Y
Sbjct: 180 NPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILY 239

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           GEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ +R
Sbjct: 240 GEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIR 299


>gi|296104370|ref|YP_003614516.1| recombinase A [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295058829|gb|ADF63567.1| recombinase A [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 352

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 209/323 (64%), Positives = 271/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+FFGEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFFGELVDLGVKEKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN   A+ IE  +R+
Sbjct: 304 ANAISWLKENPAAAKEIEKKVRE 326


>gi|329296671|ref|ZP_08254007.1| recombinase A [Plautia stali symbiont]
          Length = 356

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 211/322 (65%), Positives = 268/322 (83%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGG+ALKFY+SVRLDIRR+G+IK+ D + G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGHALKFYASVRLDIRRIGAIKEGDEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+ FGEL+DLGVK  +V+K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQIMYGEGINTFGELVDLGVKHKLVEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N+  FL+EN  IA  ++  LR
Sbjct: 304 ANATNFLKENPAIANELDVKLR 325


>gi|260779397|ref|ZP_05888288.1| RecA protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604487|gb|EEX30787.1| RecA protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 375

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 215/345 (62%), Positives = 275/345 (79%), Gaps = 10/345 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 31  NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 88

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTG
Sbjct: 89  EVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 148

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 149 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 208

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+T
Sbjct: 209 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNET 268

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ E  IMYG G +  GELIDLGVK  +V+K+GAW+S+ G ++GQG+
Sbjct: 269 RIKVVKNKIAAPFKQAETQIMYGAGFNREGELIDLGVKNKLVEKAGAWYSYNGDKIGQGK 328

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            N+  +LREN   A+ I++ LR+        LL  PA    DDA+
Sbjct: 329 ANACKYLRENPAAAQQIDTKLRE--------LLLTPAEIQPDDAE 365


>gi|240145640|ref|ZP_04744241.1| protein RecA [Roseburia intestinalis L1-82]
 gi|257202261|gb|EEV00546.1| protein RecA [Roseburia intestinalis L1-82]
 gi|291536384|emb|CBL09496.1| protein RecA [Roseburia intestinalis M50/1]
 gi|291538746|emb|CBL11857.1| protein RecA [Roseburia intestinalis XB6B4]
          Length = 387

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 209/334 (62%), Positives = 274/334 (82%), Gaps = 3/334 (0%)

Query: 2   DYRKEMNIV--DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIAL 59
           D  KE+N V  DK KAL+AA+SQI++ YGKG+IM+LG   S    +E + +GSL LDIAL
Sbjct: 5   DKYKEINAVKNDKLKALDAAISQIEKQYGKGSIMKLGDN-SAHMNVETIPTGSLSLDIAL 63

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           G+GG PKGRI+EIYGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YA+ +GVD+
Sbjct: 64  GLGGLPKGRIIEIYGPESSGKTTVALHAVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDI 123

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
            NL ISQPD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+GDMG+S  G+QARLM
Sbjct: 124 DNLYISQPDCGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGDMGDSHVGLQARLM 183

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           SQALRKLTS IS+S C+++FINQ+R K+GVMFG+PETTTGG ALKFYSSVR+D+RR+ ++
Sbjct: 184 SQALRKLTSVISKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRMDVRRIEAL 243

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           K    + GN+TRVK+VKNK+A PF++ EFDIM+G+GIS  G+++DL     +V+KSGAW+
Sbjct: 244 KQGGEVVGNRTRVKIVKNKVAPPFREAEFDIMFGQGISREGDILDLAADKGVVNKSGAWY 303

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           ++ G ++GQGREN+K +L+EN  I E IE+ +R+
Sbjct: 304 AYNGDKIGQGRENAKQYLKENPLICEEIEAKVRE 337


>gi|114320639|ref|YP_742322.1| recombinase A [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311688|sp|Q0A8K5|RECA_ALHEH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|114227033|gb|ABI56832.1| recA protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 347

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/322 (68%), Positives = 277/322 (86%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL AAL QI+R +GKGA+M++G   ++   +EV+S+GSL LDIALG+GG PKGR+V
Sbjct: 4   NRKKALGAALGQIERQFGKGAVMRMGDARAVRGDVEVISTGSLQLDIALGVGGLPKGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA++QK GGT AFVDAEHALD  YA KLGV+L +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLHAIAEAQKAGGTAAFVDAEHALDPDYAEKLGVNLDDLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSGAVD++V+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 124 EQALEITDMLVRSGAVDVVVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVR+DIRR+G+IK  D + GN+T
Sbjct: 184 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRMDIRRLGAIKKGDEVLGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFKQ EF+I+YG+GIS  GELIDLGVK  +++K+GAW+S  G R+GQG+
Sbjct: 244 RVKVVKNKMAPPFKQAEFEILYGQGISHEGELIDLGVKEGLIEKAGAWYSHNGDRIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           +N + +L+E+ E+A  +E  +R
Sbjct: 304 DNVRNYLKEHPELAAELEKQIR 325


>gi|70904888|gb|AAZ14022.1| RecA [Burkholderia cenocepacia]
          Length = 297

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 212/297 (71%), Positives = 261/297 (87%), Gaps = 1/297 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
           ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN
Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLREN 296


>gi|251788612|ref|YP_003003333.1| recA protein [Dickeya zeae Ech1591]
 gi|247537233|gb|ACT05854.1| recA protein [Dickeya zeae Ech1591]
          Length = 358

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/323 (65%), Positives = 270/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG+GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGVGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ + + G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGEEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+ FGEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINTFGELVDLGVKYKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  FL+EN  I+  ++  LR+
Sbjct: 304 ANACNFLKENPAISAELDKKLRE 326


>gi|288550328|ref|ZP_05969999.2| protein RecA [Enterobacter cancerogenus ATCC 35316]
 gi|288315474|gb|EFC54412.1| protein RecA [Enterobacter cancerogenus ATCC 35316]
          Length = 357

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 208/323 (64%), Positives = 271/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 11  NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 68

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  +A +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 69  EIYGPESSGKTTLTLQVVAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 128

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 129 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 188

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD +++ G++T
Sbjct: 189 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGENVVGSET 248

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 249 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGDKIGQGK 308

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L++N   A+ IE  +R+
Sbjct: 309 ANAISWLKDNPAAAKEIEKKVRE 331


>gi|162769937|emb|CAP58284.1| DNA recombinase [Burkholderia contaminans]
          Length = 304

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/291 (72%), Positives = 257/291 (88%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHAL
Sbjct: 1   VSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+M
Sbjct: 61  DVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYS
Sbjct: 121 GDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYS 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV
Sbjct: 181 SVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGV 240

Query: 288 KASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLV 338
           +A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ +R++ G+V
Sbjct: 241 QAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIRESLGVV 291


>gi|150016100|ref|YP_001308354.1| recombinase A [Clostridium beijerinckii NCIMB 8052]
 gi|172046855|sp|P42441|RECA_CLOB8 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|149902565|gb|ABR33398.1| recA protein [Clostridium beijerinckii NCIMB 8052]
          Length = 361

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 217/354 (61%), Positives = 278/354 (78%), Gaps = 9/354 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KA+E+A+S I++ +GKG++M+LG        ++ +S+G L LDIALGIGG PKGRI+
Sbjct: 7   EKLKAIESAMSHIEKQFGKGSVMKLGDHN--ISNMDAISTGCLDLDIALGIGGVPKGRII 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH  A+SQK GG   ++DAEHALD  YA+KLGVD+ +L+ISQPDTG
Sbjct: 65  EIYGPESSGKTTIALHIAAESQKKGGAVGYIDAEHALDPSYAQKLGVDVDSLIISQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI + LVRSGA+D++V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL  +I
Sbjct: 125 EQGLEIAEALVRSGAIDVLVVDSVAALVPKAEIEGEMGDSHIGLQARLMSQALRKLAGTI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++ C+ +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLDIRR+ SIK  DSI GN+T
Sbjct: 185 NKTNCVAIFINQLREKVGVMFGSPETTTGGRALKFYASVRLDIRRIDSIKQGDSIIGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KV+KNK+A PFKQ EFDIMY EGIS  G ++D+GVK  IV KSGAWFS+   RLGQGR
Sbjct: 245 RIKVMKNKVAPPFKQAEFDIMYNEGISRCGNIVDVGVKEEIVQKSGAWFSYGDIRLGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA-------INTKDDADKD 357
           EN+K++L+EN E+A +IE+ +R+   L    L +  A       I+ KDD   D
Sbjct: 305 ENAKLYLKENPEVALDIENQIREKYNLPPAELFKAAAPEGAKENISAKDDVAVD 358


>gi|292487291|ref|YP_003530163.1| recombinase A [Erwinia amylovora CFBP1430]
 gi|292900338|ref|YP_003539707.1| RecA protein [Erwinia amylovora ATCC 49946]
 gi|291200186|emb|CBJ47314.1| RecA protein [Erwinia amylovora ATCC 49946]
 gi|291552710|emb|CBA19755.1| Recombinase A [Erwinia amylovora CFBP1430]
 gi|312171399|emb|CBX79658.1| Recombinase A [Erwinia amylovora ATCC BAA-2158]
          Length = 355

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/322 (65%), Positives = 268/322 (83%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++T
Sbjct: 184 KNSGTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+ FGEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINIFGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N+  FL+EN  IA  I++ LR
Sbjct: 304 ANAGNFLKENPAIANEIDAKLR 325


>gi|194365254|ref|YP_002027864.1| recombinase A [Stenotrophomonas maltophilia R551-3]
 gi|238693481|sp|B4SRB0|RECA_STRM5 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|194348058|gb|ACF51181.1| recA protein [Stenotrophomonas maltophilia R551-3]
          Length = 345

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 215/325 (66%), Positives = 273/325 (84%), Gaps = 4/325 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI++ +GKG++M++G +  + E +E + +GSL LDIALGIGG PKGR+V
Sbjct: 4   NKKRALAAALGQIEKQFGKGSVMRMGDR--VVEPVEAIPTGSLMLDIALGIGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAECQKLGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VDI+V+DSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSGSVDILVVDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  ++VFINQ+RMKIGVM    SPE TTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 182 KRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELID+GV A +V+K+GAW+S+  +R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQVITEILYGEGISREGELIDMGVDAKLVEKAGAWYSYGEERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333
           G++N++ +LR+N  +A  +E+ LR+
Sbjct: 302 GKDNARGYLRDNPTVAAKLEAELRE 326


>gi|295696220|ref|YP_003589458.1| recA protein [Bacillus tusciae DSM 2912]
 gi|295411822|gb|ADG06314.1| recA protein [Bacillus tusciae DSM 2912]
          Length = 351

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/325 (65%), Positives = 275/325 (84%), Gaps = 3/325 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLG-SQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           + D+  AL+ AL QI++ +GKG+IM+LG +Q S+   +EVVS+G+L LDIALG+GGFP+G
Sbjct: 1   MADRKAALDMALRQIEKQFGKGSIMKLGEAQASM--NVEVVSTGALALDIALGVGGFPRG 58

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R++EIYGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD +YAR LGV++  LLISQP
Sbjct: 59  RVIEIYGPESSGKTTVALHAIAEVQKLGGQAAFIDAEHALDPVYARNLGVNIDELLISQP 118

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI + LVRSGAVDIIVIDSVAAL P+AE+EGDMG+S  G+QARLMSQALRKL+
Sbjct: 119 DTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAELEGDMGDSHVGLQARLMSQALRKLS 178

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            +IS+S+ I +FINQ+R K+GVMFG+PETTTGG ALKFYSSVRL++RR  ++K  + + G
Sbjct: 179 GAISKSRTIAIFINQIREKVGVMFGNPETTTGGRALKFYSSVRLEVRRAEALKQGNELIG 238

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+TR+KVVKNK+A PFKQ + DIM+GEGIS  G ++DLGV+  +++KSGAW+SF+G+RLG
Sbjct: 239 NRTRIKVVKNKVAPPFKQADVDIMFGEGISREGSIVDLGVEMDVIEKSGAWYSFEGERLG 298

Query: 308 QGRENSKIFLRENIEIAENIESLLR 332
           QGREN+K FL+E+ EIA+ IE  +R
Sbjct: 299 QGRENAKQFLKEHPEIADRIEGKIR 323


>gi|226945899|ref|YP_002800972.1| recombinase A [Azotobacter vinelandii DJ]
 gi|259563331|sp|C1DSQ4|RECA_AZOVD RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226720826|gb|ACO79997.1| bacterial DNA recombination protein [Azotobacter vinelandii DJ]
          Length = 349

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/322 (65%), Positives = 269/322 (83%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI++ +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKRALAAALGQIEKQFGKGAVMRMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L TIA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSTIAEAQKQGATCAFVDAEHALDPDYAAKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDQHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKESDEVIGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE+IDLGV+  +++KSGAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVQLGLLEKSGAWYSYQGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N+  FL +N E+A  +E  +R
Sbjct: 302 ANAAKFLEDNPEVAAAVEKSIR 323


>gi|300727820|ref|ZP_07061201.1| RecA protein [Prevotella bryantii B14]
 gi|299774919|gb|EFI71530.1| RecA protein [Prevotella bryantii B14]
          Length = 339

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 207/323 (64%), Positives = 270/323 (83%), Gaps = 2/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+AA+++I++ +GKG+IM++G +    E IEV+SSGS+ LD ALG+GG+PKGRI+E
Sbjct: 13  KLKALQAAMAKIEKDFGKGSIMKMGDEK--IEDIEVISSGSIALDAALGVGGYPKGRIIE 70

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NLLISQPD GE
Sbjct: 71  IYGPESSGKTTLAIHAIAEAQKNGGIAAFIDAEHAFDRFYAAKLGVDVDNLLISQPDNGE 130

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL+I D L+ S A+DI+V+DSVAALTP+AEIEGDMG++  G+QARLMSQALRKLTS+IS
Sbjct: 131 QALQIADQLISSSAIDILVVDSVAALTPKAEIEGDMGDNRVGLQARLMSQALRKLTSTIS 190

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIG+MFG+PETTTGGNALKFY+SVRLDIRRV SIKD D + GNQ R
Sbjct: 191 KTNTTCIFINQLREKIGIMFGNPETTTGGNALKFYASVRLDIRRVSSIKDGDQVIGNQVR 250

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV+KNK+A PF++ EF+I +GEGIS  GE++D+GV+  ++ KSG+WFS+ G +L QGR+
Sbjct: 251 VKVIKNKVAPPFRKAEFEITFGEGISKIGEIVDMGVEYGVIQKSGSWFSYNGSKLAQGRD 310

Query: 312 NSKIFLRENIEIAENIESLLRQN 334
            +K  L++N E+ E +E+L++QN
Sbjct: 311 ATKKLLKDNPELCEELETLIKQN 333


>gi|296837441|gb|ADH59579.1| DNA recombinase [Burkholderia cepacia]
          Length = 298

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 213/298 (71%), Positives = 260/298 (87%), Gaps = 1/298 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ 
Sbjct: 1   IMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEL 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVI
Sbjct: 60  QKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVI 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMF
Sbjct: 120 DSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMF 179

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+
Sbjct: 180 GNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDIL 239

Query: 272 YGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 YGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 297


>gi|296837453|gb|ADH59585.1| DNA recombinase [Burkholderia vietnamiensis]
          Length = 292

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 211/291 (72%), Positives = 256/291 (87%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
           G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT 
Sbjct: 2   GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTA 61

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL 
Sbjct: 62  AFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALV 121

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTT
Sbjct: 122 PKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTT 181

Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISF 278
           GGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS 
Sbjct: 182 GGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISR 241

Query: 279 FGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
            GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 242 QGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 292


>gi|311350371|gb|ADP92384.1| recombinase [Burkholderia cepacia ATCC 25416]
 gi|311350373|gb|ADP92385.1| recombinase [Burkholderia cepacia]
 gi|311350375|gb|ADP92386.1| recombinase [Burkholderia cepacia]
 gi|311350377|gb|ADP92387.1| recombinase [Burkholderia cepacia]
 gi|311350379|gb|ADP92388.1| recombinase [Burkholderia cepacia]
 gi|311350381|gb|ADP92389.1| recombinase [Burkholderia cepacia]
 gi|311350383|gb|ADP92390.1| recombinase [Burkholderia cepacia]
          Length = 295

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 213/296 (71%), Positives = 260/296 (87%), Gaps = 1/296 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIY
Sbjct: 1   KALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQA
Sbjct: 60  GPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+
Sbjct: 120 LEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRT 179

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVK
Sbjct: 180 NCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVK 239

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           VVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG
Sbjct: 240 VVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQG 295


>gi|253573598|ref|ZP_04850941.1| recA protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251847126|gb|EES75131.1| recA protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 353

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 217/327 (66%), Positives = 268/327 (81%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  ALE AL QI++ +GKG+IM+LG   S    +E+V SGS+ LDIALG GG P+GRI+
Sbjct: 3   DRKAALEMALRQIEKQFGKGSIMKLGE--STHMQVEIVPSGSIALDIALGTGGLPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD  YA KLGV++  LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVALHAIAEVQKIGGQAAFIDAEHALDPSYASKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+SK I +FINQ+R K+GVMFG+PETT GG ALKFYS++RLD+RRV +IK  + + GN+T
Sbjct: 181 SKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTIRLDVRRVETIKMGNDMVGNRT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PFKQ E DIMYGEGIS  G +IDLG +  IVDKSGAW+S+ G+RLGQGR
Sbjct: 241 RIKVVKNKVAPPFKQAEIDIMYGEGISKEGSIIDLGTELDIVDKSGAWYSYAGERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K FL+E+ EIA  IE  +R+++ L
Sbjct: 301 ENAKQFLKEHPEIANAIEQKIRESSNL 327


>gi|730487|sp|P41054|RECA_STRAM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|511133|emb|CAA82979.1| RecA [Streptomyces ambofaciens]
          Length = 372

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 211/331 (63%), Positives = 273/331 (82%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G +    E IEV+ +GS  LD+ALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRMGDRSK--EPIEVIPTGSTALDVALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++E+YGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 59  GRVIEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAQKLGVDIDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FL++N ++A  IE  +++  G+
Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKIKEKLGV 329


>gi|297191664|ref|ZP_06909062.1| recombinase A [Streptomyces pristinaespiralis ATCC 25486]
 gi|197721599|gb|EDY65507.1| recombinase A [Streptomyces pristinaespiralis ATCC 25486]
          Length = 375

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 212/331 (64%), Positives = 274/331 (82%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M+LG + +  E IEV+ +GS  LD+ALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE+YGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 59  GRVVEVYGPESSGKTTLTLHAVANAQKAGGAVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FL++N ++A  IE  +++  G+
Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKIKEKLGV 329


>gi|157961023|ref|YP_001501057.1| recombinase A [Shewanella pealeana ATCC 700345]
 gi|189039609|sp|A8H1T5|RECA_SHEPA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|157846023|gb|ABV86522.1| recA protein [Shewanella pealeana ATCC 700345]
          Length = 355

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 211/322 (65%), Positives = 268/322 (83%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL A L QI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P GRIV
Sbjct: 6   NKEKALNAVLGQIEKQFGKGSIMKLGEDRSM--DVETISTGSLALDVALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +QK G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLEVIAAAQKQGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD++ + GN+T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDREEVIGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YG+GI+  GEL+DLGV+  +++K+GAW+S+KG ++GQGR
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGQGINSTGELVDLGVQHKLIEKAGAWYSYKGDKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N+  +L EN  I++ IE+ LR
Sbjct: 304 ANAGKYLIENPAISDEIETTLR 325


>gi|120598088|ref|YP_962662.1| recombinase A [Shewanella sp. W3-18-1]
 gi|146293841|ref|YP_001184265.1| recombinase A [Shewanella putrefaciens CN-32]
 gi|166220680|sp|A4Y933|RECA_SHEPC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166220682|sp|A1RHG3|RECA_SHESW RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|120558181|gb|ABM24108.1| recA protein [Shewanella sp. W3-18-1]
 gi|145565531|gb|ABP76466.1| recA protein [Shewanella putrefaciens CN-32]
 gi|319427215|gb|ADV55289.1| recA protein [Shewanella putrefaciens 200]
          Length = 357

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 217/350 (62%), Positives = 275/350 (78%), Gaps = 9/350 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL A LSQI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P GRIV
Sbjct: 6   NKEKALAAVLSQIEKQFGKGSIMKLGEDRSM--DVETISTGSLSLDVALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YG+GI+  GEL+DLGV   +++K+GAW+S+KG ++GQGR
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
            N+  +L EN  IA  I+  LR+        LL  P+      +D + T+
Sbjct: 304 ANAGKYLTENPAIAAEIDKTLRE-------LLLSNPSALASSASDDESTE 346


>gi|302558031|ref|ZP_07310373.1| RecA protein [Streptomyces griseoflavus Tu4000]
 gi|302475649|gb|EFL38742.1| RecA protein [Streptomyces griseoflavus Tu4000]
          Length = 375

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 216/348 (62%), Positives = 278/348 (79%), Gaps = 4/348 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G +    E IEV+ +GS  LD+ALG+GG P+
Sbjct: 4   MAGTDREKALDAALAQIERQFGKGAVMRMGERS--MEPIEVIPTGSTALDVALGVGGLPR 61

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 62  GRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 121

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 122 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 181

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD     
Sbjct: 182 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTEAV 241

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR KVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 242 GNRTRCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVENGFVRKAGAWYTYEGDQL 301

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           GQG+EN++ FL++N ++A  IE  +++  G+      +EPA     DA
Sbjct: 302 GQGKENARNFLKDNPDLANEIEKKIKEKLGVGVRP--EEPAAEPGADA 347


>gi|197284275|ref|YP_002150147.1| recombinase A [Proteus mirabilis HI4320]
 gi|132231|sp|P11406|RECA_PROMI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238693164|sp|B4EUV6|RECA_PROMH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|45632|emb|CAA33015.1| unnamed protein product [Proteus mirabilis]
 gi|194681762|emb|CAR40963.1| protein RecA (recombinase A) [Proteus mirabilis HI4320]
          Length = 355

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 209/323 (64%), Positives = 269/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P+GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--NVETISTGSLSLDVALGAGGLPRGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G  CAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIASAQREGKICAFIDAEHALDPIYAQKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEIGDSHVGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GS+K+ D + G++T
Sbjct: 184 KNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKNGDEVIGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+ +GELIDLGVK  +V+K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQIMYGEGINTYGELIDLGVKHKLVEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+E+ E+   + + LR+
Sbjct: 304 ANATNYLKEHPEMYNELNTKLRE 326


>gi|295097278|emb|CBK86368.1| RecA protein [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 352

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 208/323 (64%), Positives = 270/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  +A +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVVAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFLGELVDLGVKEKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN   A+ IE  +R+
Sbjct: 304 ANAISWLKENPAAAKEIEKKVRE 326


>gi|301064408|ref|ZP_07204833.1| RecA protein [delta proteobacterium NaphS2]
 gi|300441490|gb|EFK05830.1| RecA protein [delta proteobacterium NaphS2]
          Length = 346

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 213/347 (61%), Positives = 278/347 (80%), Gaps = 2/347 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +D+ +A++ A+SQI++ +G+G+IM+LG   SI   +  +S+GSL LD+ALG+GG P+GR+
Sbjct: 1   MDRERAVDQAISQIEKQFGRGSIMKLGEDKSI--DVPAISTGSLALDLALGVGGVPRGRV 58

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VE+YGPESSGKTTLALH  A++Q  GG  AFVDAEHALD +YARKLGVD+ NLL+SQPDT
Sbjct: 59  VEVYGPESSGKTTLALHIAAEAQAKGGMVAFVDAEHALDVVYARKLGVDVDNLLVSQPDT 118

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQAL+I ++LVRSG +D+++IDSVAAL PRAEIEG+MG+   G+QARLMSQALRKLT +
Sbjct: 119 GEQALDIAEILVRSGGIDVLIIDSVAALVPRAEIEGEMGDHHVGLQARLMSQALRKLTGT 178

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S+  L+FINQ+RMKIGVMFG+PETTTGGNALKFY+S RLDIRR+G++K+ D + G++
Sbjct: 179 ISKSRTCLIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIGALKEGDQVVGSR 238

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFK  EFDI+YGEGIS  G+++DLGV   IV+KSGAW+SF G R+GQG
Sbjct: 239 TRVKVVKNKVAPPFKSAEFDIVYGEGISKEGDILDLGVSLDIVEKSGAWYSFDGDRIGQG 298

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           R+N K FL EN +I + I   + +  GL  D  + +        A+K
Sbjct: 299 RQNVKRFLAENTDIRDKIADQVLRQTGLRKDPKMDDEKAEAPTQAEK 345


>gi|318061001|ref|ZP_07979722.1| recombinase A [Streptomyces sp. SA3_actG]
 gi|318079874|ref|ZP_07987206.1| recombinase A [Streptomyces sp. SA3_actF]
          Length = 378

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/331 (63%), Positives = 274/331 (82%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G + +  E IEV+ +GS  LDIALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRMGERPN--EPIEVIPTGSTALDIALGVGGIPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE+YGPESSGKTTL LH +A +QK GG  AF+DAEHALD  YARKLGVD+ NL++SQ
Sbjct: 59  GRVVEVYGPESSGKTTLTLHAVANAQKAGGAVAFIDAEHALDPEYARKLGVDVDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR K+VKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRCKIVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FL++N ++A+ IE  +++  G+
Sbjct: 299 GQGKENARNFLKDNPDLADEIERKIKEKLGV 329


>gi|302522274|ref|ZP_07274616.1| recA protein [Streptomyces sp. SPB78]
 gi|302431169|gb|EFL02985.1| recA protein [Streptomyces sp. SPB78]
          Length = 378

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/331 (63%), Positives = 274/331 (82%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G + +  E IEV+ +GS  LDIALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRMGERPN--EPIEVIPTGSTALDIALGVGGIPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE+YGPESSGKTTL LH +A +QK GG  AF+DAEHALD  YARKLGVD+ NL++SQ
Sbjct: 59  GRVVEVYGPESSGKTTLTLHAVANAQKAGGAVAFIDAEHALDPEYARKLGVDVDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR K+VKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRCKIVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FL++N ++A+ IE  +++  G+
Sbjct: 299 GQGKENARNFLKDNPDLADEIERKIKEKLGV 329


>gi|227357822|ref|ZP_03842170.1| recombination protein A [Proteus mirabilis ATCC 29906]
 gi|227161932|gb|EEI46950.1| recombination protein A [Proteus mirabilis ATCC 29906]
          Length = 364

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 209/323 (64%), Positives = 269/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P+GRIV
Sbjct: 15  NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--NVETISTGSLSLDVALGAGGLPRGRIV 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G  CAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 73  EIYGPESSGKTTLTLQVIASAQREGKICAFIDAEHALDPIYAQKLGVDIDNLLCSQPDTG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 133 EQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEIGDSHVGLAARMMSQAMRKLAGNL 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GS+K+ D + G++T
Sbjct: 193 KNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKNGDEVIGSET 252

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+ +GELIDLGVK  +V+K+GAW+S+ G+++GQG+
Sbjct: 253 RVKVVKNKVAAPFKQAEFQIMYGEGINTYGELIDLGVKHKLVEKAGAWYSYNGEKIGQGK 312

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+E+ E+   + + LR+
Sbjct: 313 ANATNYLKEHPEMYNELNTKLRE 335


>gi|295836173|ref|ZP_06823106.1| conserved hypothetical protein [Streptomyces sp. SPB74]
 gi|197695273|gb|EDY42206.1| conserved hypothetical protein [Streptomyces sp. SPB74]
          Length = 377

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/331 (63%), Positives = 275/331 (83%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G + +  E IEV+ +GS  LDIALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRMGERPN--EPIEVIPTGSTALDIALGVGGIPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD  YARKLGVD+ NL++SQ
Sbjct: 59  GRVVEVYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYARKLGVDVDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR K+VKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRCKIVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FL++N ++A+ IE  +++  G+
Sbjct: 299 GQGKENARNFLKDNPDLADEIERKIKEKLGV 329


>gi|134098318|ref|YP_001103979.1| DNA recombination/repair [Saccharopolyspora erythraea NRRL 2338]
 gi|291004262|ref|ZP_06562235.1| DNA recombination/repair [Saccharopolyspora erythraea NRRL 2338]
 gi|166220675|sp|A4FAH9|RECA_SACEN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|133910941|emb|CAM01054.1| DNA recombination/repair [Saccharopolyspora erythraea NRRL 2338]
          Length = 346

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 216/339 (63%), Positives = 275/339 (81%), Gaps = 4/339 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KALE AL+QI + YGKG++M+LG +      IEV+ +GS+ LD+ALGIGG P+GRIV
Sbjct: 6   DKGKALELALAQIDKQYGKGSVMRLGDE--TRAPIEVIPTGSISLDVALGIGGLPRGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKT++ALH +A +QK GGT AF+DAEHALD  YA+ +GVD  +LL+SQPDTG
Sbjct: 64  EVYGPESSGKTSVALHAVANAQKLGGTAAFIDAEHALDPEYAKAIGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLTS++
Sbjct: 124 EQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTSAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +K   +FINQ+R K+GVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD     GN+T
Sbjct: 184 YNAKTTAIFINQLREKVGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGSDAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDI+YG GIS  G LID+GV+  I+ KSGAW++++G +LGQG+
Sbjct: 244 RVKVVKNKVAPPFKQAEFDIIYGIGISREGSLIDMGVEQGIIRKSGAWYTYEGDQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA--DSLLQEPA 347
           EN++ F+REN ++A  IE  +++  G+ A  D+   +PA
Sbjct: 304 ENARKFMRENPDVANEIEKRIKEKLGIGAQVDAETADPA 342


>gi|259909420|ref|YP_002649776.1| Recombinase A [Erwinia pyrifoliae Ep1/96]
 gi|224965042|emb|CAX56573.1| Recombinase A [Erwinia pyrifoliae Ep1/96]
 gi|283479497|emb|CAY75413.1| Recombinase A [Erwinia pyrifoliae DSM 12163]
          Length = 355

 Score =  448 bits (1153), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/322 (65%), Positives = 267/322 (82%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++T
Sbjct: 184 KNSGTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQIMYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N+  FL+EN  IA  I++ LR
Sbjct: 304 ANAGNFLKENPAIANEIDAKLR 325


>gi|167032243|ref|YP_001667474.1| recombinase A [Pseudomonas putida GB-1]
 gi|189039602|sp|B0KT20|RECA_PSEPG RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166858731|gb|ABY97138.1| recA protein [Pseudomonas putida GB-1]
          Length = 355

 Score =  448 bits (1153), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 211/323 (65%), Positives = 268/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI+R +GKGA+M++G Q    +GI  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKRALAAALGQIERQFGKGAVMRMGDQER--QGIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAEAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK++ PF+Q EF I+YG+GI   GE+IDLGV   +V+KSGAW++++G ++GQG+
Sbjct: 242 RVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYAYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L EN  I   IE  +R+
Sbjct: 302 ANAAKYLAENPAIGAEIEKQIRE 324


>gi|167626926|ref|YP_001677426.1| recombinase A [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|241667503|ref|ZP_04755081.1| recombinase A [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254876049|ref|ZP_05248759.1| recombinase A protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|189039595|sp|B0TW17|RECA_FRAP2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|167596927|gb|ABZ86925.1| Calcium-transporting ATPase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|254842070|gb|EET20484.1| recombinase A protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 360

 Score =  448 bits (1153), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 215/324 (66%), Positives = 271/324 (83%), Gaps = 1/324 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           + K KALE+ALSQI++ +GKG+IM+LG Q +  + I+V+ SG + LD+ALGIGG+PKGRI
Sbjct: 1   MSKEKALESALSQIEKQFGKGSIMRLGDQETAHD-IDVIPSGIIALDVALGIGGYPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYG ESSGKTTL L  IAQ QK GG  AF+DAEHALD  YA+ LGVD+ NL++SQPDT
Sbjct: 60  IEIYGHESSGKTTLTLLAIAQCQKQGGVAAFIDAEHALDPKYAKLLGVDVDNLIVSQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSG +DI+VIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT++
Sbjct: 120 GEQALEIADMLVRSGGIDIVVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTAN 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I RS  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRL++R+ GSIKD   ++GN+
Sbjct: 180 IKRSNTLVMFINQIRMKIGVMFGNPETTTGGNALKFYASVRLEVRKGGSIKDGVDVSGNE 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VK+VKNK+A PFKQ EF+++YGEGIS   ELIDLG K  I++KSGAW+S+KG+++GQG
Sbjct: 240 IKVKIVKNKVAPPFKQAEFELIYGEGISLEAELIDLGAKYEIIEKSGAWYSYKGKKIGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQ 333
           +E SK +L+EN    + IE  L Q
Sbjct: 300 KEKSKEYLKENTLERDEIEKALLQ 323


>gi|290956979|ref|YP_003488161.1| DNA recombinase A [Streptomyces scabiei 87.22]
 gi|260646505|emb|CBG69602.1| DNA recombinase A [Streptomyces scabiei 87.22]
          Length = 375

 Score =  448 bits (1153), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 211/331 (63%), Positives = 274/331 (82%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M+LG + +  E IEV+ +GS  LD+ALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++E+YGPESSGKTTL LH +A +Q+ GG  AFVDAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 59  GRVIEVYGPESSGKTTLTLHAVANAQRAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVENGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FL++N ++A  IE  +++  G+
Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKIKEKLGV 329


>gi|302554574|ref|ZP_07306916.1| recA protein [Streptomyces viridochromogenes DSM 40736]
 gi|302472192|gb|EFL35285.1| recA protein [Streptomyces viridochromogenes DSM 40736]
          Length = 374

 Score =  448 bits (1153), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 215/341 (63%), Positives = 278/341 (81%), Gaps = 4/341 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G + +  E IEV+S+GS  LD+ALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRMGDRTN--EPIEVISTGSTALDVALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 59  GRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTEAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR KVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           GQG+EN++ FL++N ++A  IE  +++  G+      +EPA
Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKIKEKLGVGVRP--EEPA 337


>gi|88705827|ref|ZP_01103536.1| RecA protein [Congregibacter litoralis KT71]
 gi|88699898|gb|EAQ97008.1| RecA protein [Congregibacter litoralis KT71]
          Length = 347

 Score =  448 bits (1153), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 211/322 (65%), Positives = 265/322 (82%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALEAALSQI+R +GKG+IM++G + ++   IE VS+GSLGLD+ALGIGG P GRI 
Sbjct: 4   NKGKALEAALSQIERQFGKGSIMKMGDRAAM--DIENVSTGSLGLDVALGIGGLPYGRIC 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+Q+ G TCAF+DAEHALD  YA KLGV++  L++SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAQAQRDGKTCAFIDAEHALDPKYAEKLGVNIDELIVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML RSGAVD+++IDSVAAL P+AEIEGD+G+S  G+ AR+MSQA+RKLT +I
Sbjct: 122 EQALEICDMLTRSGAVDVVIIDSVAALVPKAEIEGDIGDSHVGLAARMMSQAMRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++K+ D + GN+T
Sbjct: 182 KNNNVLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKEGDEVIGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF IMYG GI    E+ID GVK ++V+KSGAW+++ G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFKQAEFQIMYGAGIYRMAEIIDWGVKLNLVEKSGAWYAYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N+  FL  N ++   IES +R
Sbjct: 302 ANAAKFLEANPDVTSEIESAIR 323


>gi|294141936|ref|YP_003557914.1| recA protein [Shewanella violacea DSS12]
 gi|293328405|dbj|BAJ03136.1| recA protein [Shewanella violacea DSS12]
          Length = 352

 Score =  448 bits (1153), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 211/322 (65%), Positives = 268/322 (83%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL A LSQI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P GRIV
Sbjct: 6   NKEKALNAVLSQIEKQFGKGSIMKLGENRSM--DVETISTGSLSLDVALGAGGLPLGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G  CAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLEVIAAAQRQGRVCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IKD+D + GN+T
Sbjct: 184 KQTNTMLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKDRDEVIGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YG+GI+  GEL+DLGV   +V+K+GAW+S+KG ++GQGR
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGKGINRTGELVDLGVIHKLVEKAGAWYSYKGNKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N+  +L E+ EI+  IE+ LR
Sbjct: 304 ANAGKYLTEHPEISAEIETTLR 325


>gi|145600309|ref|YP_001164385.1| recombinase A [Yersinia pestis Pestoides F]
 gi|166220693|sp|A4TQ50|RECA_YERPP RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|145212005|gb|ABP41412.1| RecA protein [Yersinia pestis Pestoides F]
          Length = 356

 Score =  448 bits (1153), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 209/323 (64%), Positives = 268/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLAL  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLALQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGDVVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN  IA  ++  LR+
Sbjct: 304 ANASNYLKENPAIAAELDKKLRE 326


>gi|220928127|ref|YP_002505036.1| recA protein [Clostridium cellulolyticum H10]
 gi|219998455|gb|ACL75056.1| recA protein [Clostridium cellulolyticum H10]
          Length = 347

 Score =  448 bits (1152), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 207/331 (62%), Positives = 272/331 (82%), Gaps = 2/331 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           +++K KALE AL QI++ +GKGA+M+LG    +   +E++ +GS+ LD+ALG+GG P+GR
Sbjct: 1   MLEKRKALEMALGQIEKQFGKGAVMKLGENSHM--NVEIIPTGSMSLDLALGVGGVPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEI+GPESSGKTT+ALH IA++QK GG  AF+DAEHALD +YA+KLGVD++NL++SQPD
Sbjct: 59  IVEIFGPESSGKTTVALHIIAEAQKAGGEAAFIDAEHALDPVYAKKLGVDIENLIVSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEIT+ LVRSGA+D+IV+DSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL  
Sbjct: 119 TGEQALEITEALVRSGAIDVIVVDSVAALVPKAEIDGEMGDSHIGLQARLMSQALRKLAG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            IS+S+   +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+RR+ +IK  + + GN
Sbjct: 179 VISKSRTTAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRRIEAIKQSNEVVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFK+ EFDI+YGEGIS  G ++D+ V   IV+KSGAWFS+  QR+GQ
Sbjct: 239 RTRVKVVKNKVAPPFKEAEFDIVYGEGISREGSILDIAVNMEIVNKSGAWFSYNSQRIGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           GREN+K +L+EN  +   IE L+R N  + A
Sbjct: 299 GRENAKQYLKENPAMCSEIEKLVRSNFTVTA 329


>gi|311350343|gb|ADP92370.1| recombinase [Burkholderia pseudomallei]
 gi|311350345|gb|ADP92371.1| recombinase [Burkholderia pseudomallei]
 gi|311350347|gb|ADP92372.1| recombinase [Burkholderia pseudomallei]
 gi|311350355|gb|ADP92376.1| recombinase [Burkholderia pseudomallei]
          Length = 295

 Score =  448 bits (1152), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 213/296 (71%), Positives = 259/296 (87%), Gaps = 1/296 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL AAL+QI++ +GKG+IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIY
Sbjct: 1   KALAAALAQIEKQFGKGSIMRLGD-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQA
Sbjct: 60  GPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT +I R+
Sbjct: 120 LEIVDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTGTIKRT 179

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVK
Sbjct: 180 NCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVK 239

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           VVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG
Sbjct: 240 VVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYSGEKIGQG 295


>gi|132225|sp|P26344|RECA_ERWCA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|6006452|emb|CAB56783.1| recA [Pectobacterium carotovorum]
          Length = 342

 Score =  448 bits (1152), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 209/323 (64%), Positives = 268/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P+GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--NVETISTGSLSLDVALGAGGLPRGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPES GKTTL L  IA +Q+ G  CAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESYGKTTLTLQVIAAAQREGKICAFIDAEHALDPIYAQKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEIGDSHVGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GS+K+ D + G++T
Sbjct: 184 KNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKNGDEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+ FGELIDLGVK  +V+K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQIMYGEGINTFGELIDLGVKHKLVEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+E+ E+   + + LR+
Sbjct: 304 ANATTYLKEHPEMYNELNTKLRE 326


>gi|310641627|ref|YP_003946385.1| reca/rada recombinase (multifunctional sos repair regulator)
           [Paenibacillus polymyxa SC2]
 gi|309246577|gb|ADO56144.1| RecA/RadA recombinase (Multifunctional SOS repair regulator)
           [Paenibacillus polymyxa SC2]
          Length = 370

 Score =  448 bits (1152), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 215/328 (65%), Positives = 268/328 (81%), Gaps = 2/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG   S    +E + SGS+ LDIALG GGFP+GRI+
Sbjct: 20  DRRAALDMALRQIEKQFGKGSIMKLGE--STHMQVETIPSGSIALDIALGTGGFPRGRII 77

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QKTGG  AF+DAEHALD  YA KLGV++  LL+SQPDTG
Sbjct: 78  EVYGPESSGKTTVALHAIAEVQKTGGQAAFIDAEHALDPSYASKLGVNIDELLLSQPDTG 137

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDIIV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I
Sbjct: 138 EQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAI 197

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRLD+RR+ S+K  + I GN+T
Sbjct: 198 NKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRIESLKMGNDIVGNRT 257

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PF+Q E DIMYGEGIS  G LID+G +  IVDKSGAW+S++G+RLGQGR
Sbjct: 258 RIKVVKNKVAPPFRQAEVDIMYGEGISKEGSLIDIGTEHDIVDKSGAWYSYEGERLGQGR 317

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338
           EN+K FL+EN  IA  IE  +R  + L+
Sbjct: 318 ENAKQFLKENPNIASTIEQKIRVASNLI 345


>gi|213964486|ref|ZP_03392686.1| protein RecA [Corynebacterium amycolatum SK46]
 gi|213952679|gb|EEB64061.1| protein RecA [Corynebacterium amycolatum SK46]
          Length = 403

 Score =  448 bits (1152), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 216/356 (60%), Positives = 282/356 (79%), Gaps = 7/356 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+ AL+ I++ +GKGA+M+LG        I+V+ SG++ +D+ALG+GGFP+GRIV
Sbjct: 50  DRLKALDVALANIEKDFGKGAVMRLGDDNR--PPIQVIPSGNIAIDVALGLGGFPRGRIV 107

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA++Q+ GG  AF+DAEHALD +YARKLGVD  NLL+SQPDTG
Sbjct: 108 EIYGPESSGKTTVALHAIAEAQRQGGIAAFIDAEHALDPVYARKLGVDTDNLLVSQPDTG 167

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSGA+DIIV+DSVAALTP+AEI+G+MG+S  G+QARLMSQALRK+T ++
Sbjct: 168 EQALEITDMLVRSGAIDIIVVDSVAALTPKAEIDGEMGDSHVGLQARLMSQALRKMTGAL 227

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR D+RR+ ++KD     GN+T
Sbjct: 228 SNTGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDVRRIQTLKDGQDAVGNRT 287

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK++ PFKQ EFDI+YGEGIS  G LID+GV   IV KSG+WF+++G +LGQG+
Sbjct: 288 RLKVVKNKVSPPFKQAEFDIIYGEGISREGSLIDMGVDNGIVKKSGSWFTYEGDQLGQGK 347

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL-----VADSLLQEPAINTKDDADKDDTDN 361
           E +++ LREN EIA+ IE  +++  G+     V D    +  ++   D D DD ++
Sbjct: 348 EKARMHLRENPEIAQEIEVKIKKKLGVGEFAEVEDETDIDAPVDVVPDIDFDDLED 403


>gi|296837415|gb|ADH59566.1| DNA recombinase [Burkholderia lata]
          Length = 297

 Score =  448 bits (1152), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 212/296 (71%), Positives = 259/296 (87%), Gaps = 1/296 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 3   FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 61

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 62  VIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 121

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 122 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 181

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSS RLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 182 IGVMFGNPETTTGGNALKFYSSGRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 241

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 242 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 297


>gi|294668869|ref|ZP_06733959.1| protein RecA [Neisseria elongata subsp. glycolytica ATCC 29315]
 gi|291309166|gb|EFE50409.1| protein RecA [Neisseria elongata subsp. glycolytica ATCC 29315]
          Length = 365

 Score =  448 bits (1152), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/316 (67%), Positives = 267/316 (84%), Gaps = 3/316 (0%)

Query: 22  QIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           QI++ +GKG+IM++ GS     E +EVVS+GSLGLD+ALG+GG P+GRIVEI+GPESSGK
Sbjct: 32  QIEKQFGKGSIMKMDGSHQD--EDLEVVSTGSLGLDLALGVGGLPRGRIVEIFGPESSGK 89

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L TIAQ QK GG CAF+DAE+A D IYARKLGV ++ L++SQPDTGEQALEI DML
Sbjct: 90  TTLCLETIAQCQKNGGVCAFIDAENAFDPIYARKLGVKVEELMVSQPDTGEQALEICDML 149

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSG VD++VIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  I ++  ++VFI
Sbjct: 150 VRSGGVDMVVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGHIKKTNTLVVFI 209

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR   IK  D + GN+T+VKV+KNK+A
Sbjct: 210 NQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRGLQIKKGDDVIGNETKVKVIKNKVA 269

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
            PF+Q EFDI+YGEG+S+ GELIDLGVK  IV+KSGAW+S+ G ++GQG++N +++L+EN
Sbjct: 270 PPFRQAEFDILYGEGVSWEGELIDLGVKYDIVEKSGAWYSYNGAKIGQGKDNVRVWLKEN 329

Query: 321 IEIAENIESLLRQNAG 336
            ++A  I+S +R  AG
Sbjct: 330 PDVANEIDSKIRAAAG 345


>gi|239944750|ref|ZP_04696687.1| recombinase A [Streptomyces roseosporus NRRL 15998]
          Length = 372

 Score =  448 bits (1152), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 215/342 (62%), Positives = 279/342 (81%), Gaps = 4/342 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M+LG + +  E IEV+ +GS  LD+ALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE+YGPESSGKTTL LH +A +Q+ GG+ AF+DAEHALD  YA+KLGVD+ +L++SQ
Sbjct: 59  GRVVEVYGPESSGKTTLTLHAVANAQRQGGSVAFIDAEHALDPEYAKKLGVDIDSLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIES--LLRQNAGLVADSLLQEP 346
           GQG+EN++ FL++N ++A  IE   L +   G+  D+   EP
Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKILEKLGVGVRPDAAAGEP 340


>gi|239982694|ref|ZP_04705218.1| recombinase A [Streptomyces albus J1074]
          Length = 374

 Score =  447 bits (1151), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/331 (63%), Positives = 273/331 (82%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G + +  E +EV+ +GS  LDIALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRMGERPN--EPVEVIPTGSTALDIALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE+YGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 59  GRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR KVVKNK+A PFKQ EFDI+YG GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRCKVVKNKVAPPFKQAEFDILYGHGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FL++N ++A+ IE  +++  G+
Sbjct: 299 GQGKENARNFLKDNPDLADEIERKIKEKLGV 329


>gi|308068729|ref|YP_003870334.1| RecA protein (Recombinase A) [Paenibacillus polymyxa E681]
 gi|305858008|gb|ADM69796.1| RecA protein (Recombinase A) [Paenibacillus polymyxa E681]
          Length = 359

 Score =  447 bits (1151), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/328 (65%), Positives = 268/328 (81%), Gaps = 2/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG   S    +E + SGS+ LDIALG GGFP+GR++
Sbjct: 9   DRRAALDMALRQIEKQFGKGSIMKLGE--STHMQVETIPSGSIALDIALGTGGFPRGRVI 66

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ QKTGG  AF+DAEHALD  YA KLGV++  LL+SQPDTG
Sbjct: 67  EIYGPESSGKTTVALHAIAEVQKTGGQAAFIDAEHALDPSYASKLGVNIDELLLSQPDTG 126

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDI+V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I
Sbjct: 127 EQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAI 186

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRLD+RR+ S+K  + I GN+T
Sbjct: 187 NKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRIESLKMGNDIVGNRT 246

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PF+Q E DIMYGEGIS  G LID+G +  IVDKSGAW+S++G+RLGQGR
Sbjct: 247 RIKVVKNKVAPPFRQAEVDIMYGEGISKEGSLIDIGTEHDIVDKSGAWYSYEGERLGQGR 306

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338
           EN+K FL+EN  IA  IE  +R  + L+
Sbjct: 307 ENAKQFLKENPNIASTIEQKIRVASNLI 334


>gi|260437155|ref|ZP_05790971.1| protein RecA [Butyrivibrio crossotus DSM 2876]
 gi|292810467|gb|EFF69672.1| protein RecA [Butyrivibrio crossotus DSM 2876]
          Length = 343

 Score =  447 bits (1151), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 208/324 (64%), Positives = 270/324 (83%), Gaps = 1/324 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK +AL+AALS I+R +GKGA+M+LG   +    +E V +GSL LDIALG+GG PKGRIV
Sbjct: 5   DKLRALDAALSSIERSFGKGAVMKLGDPAAAMN-VETVPTGSLSLDIALGMGGVPKGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YAR +GV++  L ISQPD G
Sbjct: 64  EIYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYARNIGVNIDELYISQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ LVRSGAVDII++DSVAAL P+AEI+GDMG+S  G+QARLMSQALRKLT+ I
Sbjct: 124 EQALEITETLVRSGAVDIIIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKLTAVI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++ CI++FINQ+R K+GVMFG+PETTTGG ALKFYSS+R+D+RR+ S+K    + GN+T
Sbjct: 184 SKTNCIVIFINQLREKVGVMFGNPETTTGGRALKFYSSIRMDVRRIESLKANGEVVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++ EFDIM+G+GIS  G+++DLGV +++V KSGAWF++ G ++GQGR
Sbjct: 244 RVKVVKNKIAPPFREAEFDIMFGKGISREGDILDLGVTSNVVQKSGAWFAYNGDKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQN 334
           EN+KI+L E+ +I E IE  +R++
Sbjct: 304 ENAKIYLSEHPDIMEEIEQKVREH 327


>gi|239928555|ref|ZP_04685508.1| recombinase A [Streptomyces ghanaensis ATCC 14672]
 gi|291436881|ref|ZP_06576271.1| recA [Streptomyces ghanaensis ATCC 14672]
 gi|291339776|gb|EFE66732.1| recA [Streptomyces ghanaensis ATCC 14672]
          Length = 373

 Score =  447 bits (1151), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 215/347 (61%), Positives = 277/347 (79%), Gaps = 4/347 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G +    E IEV+ +GS  LD+ALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRMGERSK--EPIEVIPTGSTALDVALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 59  GRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTEAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR KVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           GQG+EN++ FL++N ++A  IE  +++  G+      +EPA     D
Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKIKEKLGVGVRP--EEPATEPGTD 343


>gi|113969469|ref|YP_733262.1| recombinase A [Shewanella sp. MR-4]
 gi|114046702|ref|YP_737252.1| recombinase A [Shewanella sp. MR-7]
 gi|122944845|sp|Q0HXG0|RECA_SHESR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123130637|sp|Q0HL62|RECA_SHESM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|113884153|gb|ABI38205.1| recA protein [Shewanella sp. MR-4]
 gi|113888144|gb|ABI42195.1| recA protein [Shewanella sp. MR-7]
          Length = 357

 Score =  447 bits (1151), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 215/350 (61%), Positives = 277/350 (79%), Gaps = 9/350 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL A LSQI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P GRIV
Sbjct: 6   NKEKALAAVLSQIEKQFGKGSIMKLGEDRSM--DVETISTGSLSLDVALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YG+GI+  GEL+DLGV   +++K+GAW+S+KG ++GQGR
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
            N+  +L EN  IA  I+  LR+        LL  PA  +   +D ++++
Sbjct: 304 ANAGKYLTENPAIAAEIDKTLRE-------LLLSNPAALSSSASDDENSE 346


>gi|291454543|ref|ZP_06593933.1| RecA protein [Streptomyces albus J1074]
 gi|291357492|gb|EFE84394.1| RecA protein [Streptomyces albus J1074]
          Length = 377

 Score =  447 bits (1151), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/331 (63%), Positives = 273/331 (82%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G + +  E +EV+ +GS  LDIALG+GG P+
Sbjct: 4   MAGTDREKALDAALAQIERQFGKGAVMRMGERPN--EPVEVIPTGSTALDIALGVGGLPR 61

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE+YGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 62  GRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 121

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 122 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 181

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD     
Sbjct: 182 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTDAV 241

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR KVVKNK+A PFKQ EFDI+YG GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 242 GNRTRCKVVKNKVAPPFKQAEFDILYGHGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 301

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FL++N ++A+ IE  +++  G+
Sbjct: 302 GQGKENARNFLKDNPDLADEIERKIKEKLGV 332


>gi|239991215|ref|ZP_04711879.1| recombinase A [Streptomyces roseosporus NRRL 11379]
 gi|291448212|ref|ZP_06587602.1| recombinase A [Streptomyces roseosporus NRRL 15998]
 gi|291351159|gb|EFE78063.1| recombinase A [Streptomyces roseosporus NRRL 15998]
          Length = 375

 Score =  447 bits (1151), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 215/342 (62%), Positives = 279/342 (81%), Gaps = 4/342 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M+LG + +  E IEV+ +GS  LD+ALG+GG P+
Sbjct: 4   MAGTDREKALDAALAQIERQFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPR 61

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE+YGPESSGKTTL LH +A +Q+ GG+ AF+DAEHALD  YA+KLGVD+ +L++SQ
Sbjct: 62  GRVVEVYGPESSGKTTLTLHAVANAQRQGGSVAFIDAEHALDPEYAKKLGVDIDSLILSQ 121

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 122 PDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 181

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     
Sbjct: 182 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 241

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 242 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 301

Query: 307 GQGRENSKIFLRENIEIAENIES--LLRQNAGLVADSLLQEP 346
           GQG+EN++ FL++N ++A  IE   L +   G+  D+   EP
Sbjct: 302 GQGKENARNFLKDNPDLANEIEKKILEKLGVGVRPDAAAGEP 343


>gi|264680913|ref|YP_003280823.1| recA protein [Comamonas testosteroni CNB-2]
 gi|262211429|gb|ACY35527.1| recA protein [Comamonas testosteroni CNB-2]
          Length = 369

 Score =  447 bits (1151), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 217/316 (68%), Positives = 276/316 (87%), Gaps = 1/316 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG IM+LG +G   E I+VVS+GSLGLDIALG+GG P+GR++EIYGPESSGKT
Sbjct: 24  QIEKQFGKGTIMKLG-EGEAIEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKT 82

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGTCAF+DAEHALD+ YA+KLGV+L ++LISQPDTGEQALEI D LV
Sbjct: 83  TLTLQVIAEMQKQGGTCAFIDAEHALDTSYAQKLGVNLSDVLISQPDTGEQALEICDSLV 142

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD+IVIDSVAALTP+AEIEG+MG++LPG+QARLMSQALRKLT++I ++ C+++FIN
Sbjct: 143 RSGAVDLIVIDSVAALTPKAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFIN 202

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK  D   GN+T+VKVVKNK++ 
Sbjct: 203 QIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSP 262

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PFK  EFDI++GEGIS  GE++D+GV A I++KSGAW+++ G+++GQGR+NS+ FLREN 
Sbjct: 263 PFKTAEFDILFGEGISREGEILDMGVNAKILEKSGAWYAYNGEKIGQGRDNSREFLRENP 322

Query: 322 EIAENIESLLRQNAGL 337
            +A  IE+ +R++ G+
Sbjct: 323 ALAIEIENKVRESLGI 338


>gi|132220|sp|P29246|RECA_AZOVI RecName: Full=Protein RecA; AltName: Full=Recombinase A
          Length = 349

 Score =  447 bits (1151), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 209/322 (64%), Positives = 268/322 (83%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI++ +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKRALAAALGQIEKQFGKGAVMRMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L TIA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSTIAEAQKQGATCAFVDAEHALDPDYAAKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDQHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFG+PETTTG NALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 QNANCLVIFINQIRMKIGVMFGNPETTTGANALKFYASVRLDIRRTGAVKESDEVIGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE+IDLGV+  +++KSGAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVQLGLLEKSGAWYSYQGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N+  FL +N E+A  +E  +R
Sbjct: 302 ANAAKFLEDNPEVAAAVEKSIR 323


>gi|170727678|ref|YP_001761704.1| recombinase A [Shewanella woodyi ATCC 51908]
 gi|238688716|sp|B1KPS6|RECA_SHEWM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|169813025|gb|ACA87609.1| recA protein [Shewanella woodyi ATCC 51908]
          Length = 353

 Score =  447 bits (1151), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 215/341 (63%), Positives = 277/341 (81%), Gaps = 7/341 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL A L QI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P GRIV
Sbjct: 6   NKEKALNAVLGQIEKQFGKGSIMKLGENRSM--DVETISTGSLSLDVALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G  CAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLELIAAAQREGKVCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK++D + GN+T
Sbjct: 184 KQTNTMLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKERDEVVGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YG+GI+  GEL+DLGV   +V+K+GAW+S+KG ++GQGR
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGQGINRTGELVDLGVAHKLVEKAGAWYSYKGDKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
            N+  FL +N  IAE I++ LR   G++  S+  EPA+ ++
Sbjct: 304 ANAGKFLLDNPAIAEEIDTALR---GMLLASV--EPAVESE 339


>gi|238756255|ref|ZP_04617571.1| hypothetical protein yruck0001_32420 [Yersinia ruckeri ATCC 29473]
 gi|238705510|gb|EEP97911.1| hypothetical protein yruck0001_32420 [Yersinia ruckeri ATCC 29473]
          Length = 356

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/323 (64%), Positives = 268/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKGAIM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGAIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDVVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN  IA +I+  LR+
Sbjct: 304 ANASNYLKENPAIAADIDKKLRE 326


>gi|254468858|ref|ZP_05082264.1| protein RecA [beta proteobacterium KB13]
 gi|207087668|gb|EDZ64951.1| protein RecA [beta proteobacterium KB13]
          Length = 350

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/348 (64%), Positives = 288/348 (82%), Gaps = 3/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALEAA++QI++ YGKG++M++     I E IE +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKQKALEAAMAQIEKQYGKGSVMKMDGT-EIDESIEAISTGSLGLDIALGIGGLPKGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKT+L L  IA +QK GGT AF+DAEHALD+ YA KLGV+L +LLISQPDTG
Sbjct: 63  EIYGPESSGKTSLTLSVIAAAQKAGGTAAFIDAEHALDTQYAAKLGVNLTDLLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSG+VD++V+DSVAALTPRAEIEGDMG+S  G+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDMLVRSGSVDVVVVDSVAALTPRAEIEGDMGDSHMGLQARLMSQALRKLTGNI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++  +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK  D + G +T
Sbjct: 183 KKTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKKGDEVVGAET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EFD+MYGEGIS  GE+I+ GVK  +++K+GAW+S  G+++GQG+
Sbjct: 243 RVKVVKNKVAPPFRQAEFDVMYGEGISLEGEIIEQGVKLKLIEKAGAWYSHNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           +N + +L++N +I++ +E  +R NA L    ++ E    T +DA  +D
Sbjct: 303 DNVREYLKQNPDISKALEDQIRANANLANSKMIVEN--QTDEDAVDED 348


>gi|170723191|ref|YP_001750879.1| recombinase A [Pseudomonas putida W619]
 gi|229619922|sp|B1JDA2|RECA_PSEPW RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|169761194|gb|ACA74510.1| recA protein [Pseudomonas putida W619]
          Length = 355

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 210/323 (65%), Positives = 268/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI+R +GKGA+M++G       GI  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKRALAAALGQIERQFGKGAVMRMGDHERT--GIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK+G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAEAQKSGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK++ PF+Q EF I+YG+GI   GE+IDLGV   +V+KSGAW++++G ++GQG+
Sbjct: 242 RVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYAYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN  I   IE  +R+
Sbjct: 302 ANAAKYLQENPAIGAEIEKQIRE 324


>gi|24374940|ref|NP_718983.1| recombinase A [Shewanella oneidensis MR-1]
 gi|30173289|sp|Q8EBS0|RECA_SHEON RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|24349655|gb|AAN56427.1|AE015779_4 recA protein [Shewanella oneidensis MR-1]
          Length = 357

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 215/350 (61%), Positives = 275/350 (78%), Gaps = 9/350 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL A LSQI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P GRIV
Sbjct: 6   NKEKALAAVLSQIEKQFGKGSIMKLGEDRSM--DVETISTGSLSLDVALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YG+GI+  GEL+DLGV   +++K+GAW+S+KG ++GQGR
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
            N+  +L EN  IA  I+  LR+        LL  P+      +D D+ +
Sbjct: 304 ANAGKYLTENPAIAAEIDKTLRE-------LLLSNPSALASSASDDDNVE 346


>gi|310658983|ref|YP_003936704.1| DNA strand exchange and recombination protein [Clostridium
           sticklandii DSM 519]
 gi|308825761|emb|CBH21799.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Clostridium sticklandii]
          Length = 350

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 212/328 (64%), Positives = 270/328 (82%), Gaps = 2/328 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E  + +K KAL+AA+++I++ +GKG+IM LG    +   IE +S+GS+GLD+A+GIGG P
Sbjct: 3   EKRMEEKRKALDAAIAKIEKDFGKGSIMTLGENAKM--NIETISTGSIGLDVAIGIGGLP 60

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTT+ALH +A++QK GG  AFVDAEHALD +YA+ LGVD+  L++S
Sbjct: 61  KGRIVEIYGPESSGKTTVALHAVAEAQKLGGIAAFVDAEHALDPVYAKALGVDIDKLIVS 120

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEIT+ LVRSGA+DIIV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRK
Sbjct: 121 QPDTGEQALEITESLVRSGAIDIIVVDSVAALVPKAEIEGEMGDSHIGLQARLMSQALRK 180

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           L  SI++SK I +FINQ+R K+GVMFG+PETTTGG ALKFY+SVRLD+R++  IK  D++
Sbjct: 181 LAGSINKSKTITIFINQLREKVGVMFGNPETTTGGRALKFYASVRLDVRKIDIIKQGDTM 240

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            G++TRVKVVKNK+A PFKQ EFDIMYG+GIS  GEL+D+G    I+ KSGAW+S+  +R
Sbjct: 241 LGSRTRVKVVKNKVAPPFKQCEFDIMYGQGISKVGELVDIGANLDIIKKSGAWYSYNEER 300

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQ 333
           LGQGREN K F  EN E+   +ES +R+
Sbjct: 301 LGQGRENVKQFFMENPELMNEVESKVRE 328


>gi|51246810|ref|YP_066694.1| RecA protein [Desulfotalea psychrophila LSv54]
 gi|59798230|sp|Q6AIZ3|RECA_DESPS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|50877847|emb|CAG37687.1| probable RecA protein [Desulfotalea psychrophila LSv54]
          Length = 355

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 214/327 (65%), Positives = 266/327 (81%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK+ ++E A+SQIQ+ +GKG+IM+LG Q    E I V+S+G+L LDIALG+GG PKGR+ 
Sbjct: 8   DKAGSVENAISQIQKQFGKGSIMRLGEQA--LEAIPVISTGALSLDIALGVGGLPKGRMT 65

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH +A++QK GG  AF+DAEHALD+ YA KLGV++ NLL+SQPD G
Sbjct: 66  EIYGPESSGKTTLALHVVAEAQKLGGIAAFIDAEHALDTAYAEKLGVNIDNLLVSQPDFG 125

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI ++L+RSG VDIIV+DSVAALTP+AEI+G++G+   G+QARLMSQA+RK    +
Sbjct: 126 EQALEIAEILIRSGGVDIIVVDSVAALTPKAEIDGNVGDVHVGLQARLMSQAMRKFAGVL 185

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +RS  +L+FINQ+RMKIGVMFGSPETTTGGNALKFY S RLDIRR+G+IKD   ITGN+T
Sbjct: 186 NRSNTVLIFINQIRMKIGVMFGSPETTTGGNALKFYCSERLDIRRIGAIKDGQEITGNRT 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK  EFDI+YGEGIS  G++ DL V   I+DKSG+W+S+K +R+GQGR
Sbjct: 246 RVKVVKNKVAPPFKIAEFDIIYGEGISKIGDMFDLAVGLDIIDKSGSWYSYKNERIGQGR 305

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           ENSK FL +   I   IE  +R   GL
Sbjct: 306 ENSKQFLMDTPAICHEIEEKVRSAYGL 332


>gi|300722253|ref|YP_003711537.1| DNA strand exchange and recombination protein [Xenorhabdus
           nematophila ATCC 19061]
 gi|298286856|sp|Q9X5P5|RECA_XENNA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|297628754|emb|CBJ89332.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Xenorhabdus nematophila ATCC 19061]
          Length = 358

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 210/322 (65%), Positives = 265/322 (82%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGENRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGRTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALSRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GS+K+ D + G++T
Sbjct: 184 KNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSVKNGDEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GELIDLGVK  +V+K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINTLGELIDLGVKHKMVEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N+ I+L+E+ E A  +   LR
Sbjct: 304 ANATIYLKEHPETAAELNKKLR 325


>gi|297156748|gb|ADI06460.1| recombinase A [Streptomyces bingchenggensis BCW-1]
          Length = 378

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 214/342 (62%), Positives = 279/342 (81%), Gaps = 4/342 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G + +  E IEV+ +GS  LD+ALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRMGERPN--EPIEVIPTGSTALDVALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE++GPESSGKTTL LH +A +Q+ GG  AFVDAEHALD  YA+KLGVD  +L++SQ
Sbjct: 59  GRVVEVFGPESSGKTTLTLHAVANAQRAGGAVAFVDAEHALDPDYAQKLGVDTDSLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTEAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V KSGAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKSGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348
           GQG+EN++ FL++N ++A  IE  +++  G+      +EPA+
Sbjct: 299 GQGKENARNFLKDNPDLANEIERKIKEKLGIGVKR--EEPAV 338


>gi|300309990|ref|YP_003774082.1| recombinase A protein [Herbaspirillum seropedicae SmR1]
 gi|33860196|sp|Q9F672|RECA_HERSE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|21542498|gb|AAG13409.2|AF297289_1 SOS repair protein RecA [Herbaspirillum seropedicae]
 gi|300072775|gb|ADJ62174.1| recombinase A protein [Herbaspirillum seropedicae SmR1]
          Length = 351

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/332 (67%), Positives = 284/332 (85%), Gaps = 1/332 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD +K  N  +KSKAL AAL+QI++ +GKG++M++   G I E I+ VS+GSLGLDIALG
Sbjct: 1   MDDKKAANNSEKSKALAAALAQIEKQFGKGSVMRM-EDGVIAEEIQAVSTGSLGLDIALG 59

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG P+GR++EIYGPESSGKTTL L +IA+ QK GGTCAF+DAEHALD  YA+KLGV+L 
Sbjct: 60  IGGLPRGRVIEIYGPESSGKTTLTLQSIAEMQKLGGTCAFIDAEHALDVTYAQKLGVNLN 119

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +LLISQPDTGEQALEI D LVRSGAVD+IV+DSVAALTP+AEIEGDMG+SLPG+QARLMS
Sbjct: 120 DLLISQPDTGEQALEICDALVRSGAVDLIVVDSVAALTPKAEIEGDMGDSLPGLQARLMS 179

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT SI+R+   ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK
Sbjct: 180 QALRKLTGSINRTNTTVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIK 239

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             D + G++T+VKVVKNK+A PF++  FDI+YGEG S  GE++DLG +  +V+KSGAW+S
Sbjct: 240 SGDEVIGSETKVKVVKNKVAPPFREAHFDILYGEGTSREGEILDLGSEHKVVEKSGAWYS 299

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           + G+R+GQG++N++ +L+E+ E+A  IE+ +R
Sbjct: 300 YNGERIGQGKDNARNYLKEHPELAREIENKVR 331


>gi|296803096|gb|ADH51624.1| DNA recombinase [Burkholderia contaminans]
          Length = 316

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 216/316 (68%), Positives = 266/316 (84%), Gaps = 12/316 (3%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASI-----------VDKSGAWFSFKGQRLGQGRENSKIFLR 318
           I+YGEGIS  GE+IDLGV+A I           VDK+GAW+S+ G+++GQG++N++ FLR
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNVDKAGAWYSYNGEKIGQGKDNAREFLR 299

Query: 319 ENIEIAENIESLLRQN 334
           EN EIA  IE+ +R++
Sbjct: 300 ENPEIAREIENRIRES 315


>gi|297202809|ref|ZP_06920206.1| recombinase A [Streptomyces sviceus ATCC 29083]
 gi|297148206|gb|EFH28888.1| recombinase A [Streptomyces sviceus ATCC 29083]
          Length = 377

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 210/331 (63%), Positives = 274/331 (82%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G + +  E IEV+ +GS  LD+ALG+GG P+
Sbjct: 4   MAGTDREKALDAALAQIERQFGKGAVMRMGERPN--EPIEVIPTGSTALDVALGVGGIPR 61

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE+YGPESSGKTTL LH +A +QK GG  AF+DAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 62  GRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFIDAEHALDPEYAKKLGVDIDNLILSQ 121

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 122 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 181

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD     
Sbjct: 182 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRMDIRRIETLKDGTDAV 241

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 242 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVENGFVRKAGAWYTYEGDQL 301

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FL++N ++A  IE  +++  G+
Sbjct: 302 GQGKENARNFLKDNPDLANEIEKKIKEKLGV 332


>gi|26988361|ref|NP_743786.1| recombinase A [Pseudomonas putida KT2440]
 gi|148549294|ref|YP_001269396.1| recombinase A [Pseudomonas putida F1]
 gi|37537942|sp|Q88ME4|RECA_PSEPK RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166220669|sp|A5W7V2|RECA_PSEP1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|24983113|gb|AAN67250.1|AE016352_3 recA protein [Pseudomonas putida KT2440]
 gi|148513352|gb|ABQ80212.1| RecA protein [Pseudomonas putida F1]
 gi|313500204|gb|ADR61570.1| RecA [Pseudomonas putida BIRD-1]
          Length = 355

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 210/323 (65%), Positives = 267/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI+R +GKGA+M++G      +GI  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKRALAAALGQIERQFGKGAVMRMGDHER--QGIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAEAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK++ PF+Q EF I+YG+GI   GE+IDLGV   +V+KSGAW++++G ++GQG+
Sbjct: 242 RVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYAYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L EN  I   IE  +R+
Sbjct: 302 ANAAKYLAENPAIGAEIEKQIRE 324


>gi|53802433|ref|YP_112918.1| recA protein [Methylococcus capsulatus str. Bath]
 gi|59798161|sp|Q60BS8|RECA_METCA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|53756194|gb|AAU90485.1| recA protein [Methylococcus capsulatus str. Bath]
          Length = 347

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/310 (68%), Positives = 267/310 (86%), Gaps = 1/310 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AALSQI++ +GKG++M++G   ++ + I+V+ +GSL LDIALG GG P+GRIV
Sbjct: 4   NKRKALGAALSQIEKQFGKGSVMRMGDVAAVRD-IDVIPTGSLALDIALGCGGLPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QKTGG  AFVDAEHALD +YA K+GV+L +LL+SQPDTG
Sbjct: 63  EIYGPESSGKTTLTLEVIAQAQKTGGVAAFVDAEHALDPVYAEKIGVNLDDLLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D+LVRSG VD++VIDSVAALTP+AE+EG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 123 EQALEIADVLVRSGGVDVVVIDSVAALTPKAELEGEMGDSHMGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T
Sbjct: 183 KRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRSGAIKNGDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+  +F+I+YGEGIS  GELIDLGV   IV KSG+W+S+ G R+GQG+
Sbjct: 243 RVKVVKNKVAPPFRTADFEILYGEGISREGELIDLGVNHDIVQKSGSWYSYGGDRIGQGK 302

Query: 311 ENSKIFLREN 320
           +N +I+L+E+
Sbjct: 303 DNVRIYLKEH 312


>gi|160933139|ref|ZP_02080528.1| hypothetical protein CLOLEP_01982 [Clostridium leptum DSM 753]
 gi|156868213|gb|EDO61585.1| hypothetical protein CLOLEP_01982 [Clostridium leptum DSM 753]
          Length = 391

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 212/331 (64%), Positives = 266/331 (80%), Gaps = 2/331 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALE AL QI++ +GKGA+M+LG   ++   ++ + +GSL LD+ALGIGG P
Sbjct: 18  ETMAVDKSKALETALGQIEKQFGKGAVMRLGQNEAMH--VDAIPTGSLSLDLALGIGGLP 75

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRIVEIYGPESSGKTTLALH IA+ QK+GG  AF+D EHALD +YAR LGVD+ +LL+S
Sbjct: 76  RGRIVEIYGPESSGKTTLALHCIAEGQKSGGYAAFIDVEHALDPVYARALGVDVDSLLVS 135

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEIT+ LVRSGA+D+IV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRK
Sbjct: 136 QPDTGEQALEITEALVRSGAIDVIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRK 195

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           L  +IS+S C+ +FINQ+R K+GVM+G+PE T GG ALKFYSSVR+DIRR+ ++K    +
Sbjct: 196 LAGAISKSNCVAIFINQLREKVGVMYGNPEVTPGGRALKFYSSVRIDIRRIETLKAGGEM 255

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            G++TR KVVKNK+A PF++ EFD+MYG GIS  GEL+DL VK  +V KSGAWFSF G+R
Sbjct: 256 IGSRTRAKVVKNKIAPPFREAEFDVMYGRGISREGELLDLAVKLDVVQKSGAWFSFNGER 315

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAG 336
           LGQGR+N K + R + + A  IE  +  NAG
Sbjct: 316 LGQGRDNVKEYFRSHPDFAAKIEKQVYDNAG 346


>gi|90019285|gb|ABD84293.1| RecA/RadA recombinase-like [Yersinia sp. MH-1]
          Length = 355

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/323 (64%), Positives = 267/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKGAIM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGAIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDVVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN  IA  I+  LR+
Sbjct: 304 ANASNYLKENPAIATEIDKKLRE 326


>gi|260591294|ref|ZP_05856752.1| protein RecA [Prevotella veroralis F0319]
 gi|260536660|gb|EEX19277.1| protein RecA [Prevotella veroralis F0319]
          Length = 339

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 208/322 (64%), Positives = 268/322 (83%), Gaps = 2/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+AA+S+I++ +GKG+IM++G +    E ++V+ +GS+ LD ALG+GG+P+GRI+E
Sbjct: 13  KLKALQAAMSKIEKDFGKGSIMRMGDEQ--IENVDVIPTGSVTLDTALGVGGYPRGRIIE 70

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD GE
Sbjct: 71  IYGPESSGKTTLAIHAIAEAQKQGGIAAFIDAEHAFDRFYAEKLGVDVDNLWISQPDNGE 130

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RS A+DI+V+DSVAALTP+ EIEGDMG+S  G+QARLMSQALRKLTS+IS
Sbjct: 131 QALEIADQLIRSSAIDILVVDSVAALTPKKEIEGDMGDSAVGLQARLMSQALRKLTSTIS 190

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGVMFG+PETTTGGNALKFYSSVRLDIRRV SIK+ D + GNQ R
Sbjct: 191 KTNTCCIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRVTSIKNGDQVIGNQVR 250

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNK+A PF++ EF+I +GEGIS  GE++DLGV+ +I+ KSG+WFS+ G +L QGR+
Sbjct: 251 VKIVKNKVAPPFRKAEFEITFGEGISKIGEIVDLGVQYNIIQKSGSWFSYNGTKLAQGRD 310

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
            +K  L++N E+AE IE L++Q
Sbjct: 311 ATKTMLKDNPELAEEIEGLIKQ 332


>gi|323492973|ref|ZP_08098111.1| recombinase A [Vibrio brasiliensis LMG 20546]
 gi|323312804|gb|EGA65930.1| recombinase A [Vibrio brasiliensis LMG 20546]
          Length = 347

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 214/345 (62%), Positives = 276/345 (80%), Gaps = 10/345 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ E  I+YG G +  GELIDLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKQAETQILYGAGFNREGELIDLGVKHKLIEKAGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            N+  FLR+N + A+ I+S LR+        +L  PA    +DA+
Sbjct: 302 ANAGKFLRDNPDAAKAIDSKLRE--------MLLSPAEVQPEDAE 338


>gi|73667500|ref|YP_303516.1| recombinase A [Ehrlichia canis str. Jake]
 gi|123732180|sp|Q3YQT7|RECA_EHRCJ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|72394641|gb|AAZ68918.1| RecA bacterial DNA recombination protein [Ehrlichia canis str.
           Jake]
          Length = 357

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 220/323 (68%), Positives = 278/323 (86%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ A+SQI++ +G+GAIM+L  QG+I E I+ +S+GS+ LD ALGIGGFPKGRIV
Sbjct: 10  ERQKALDNAISQIEKAFGRGAIMKL-KQGAI-EKIDSISTGSIALDTALGIGGFPKGRIV 67

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTLALH IA+SQK GG CAF+DAEHALD +YARKLGV+  +L++SQPDTG
Sbjct: 68  EIFGPESSGKTTLALHVIAESQKKGGNCAFIDAEHALDIMYARKLGVNTGDLIVSQPDTG 127

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL I + LV SGA+D+IV+DSVAALTPRAEIEGDMG+   G+QARL+S ALRKLTS +
Sbjct: 128 EQALHIVEYLVCSGAIDVIVVDSVAALTPRAEIEGDMGDQHMGLQARLLSHALRKLTSIV 187

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++ C+L+FINQ+RMKIGV++G+PETTTGGNALKFYSSVRLDIR+V +IKDKD I GNQT
Sbjct: 188 SKANCVLIFINQIRMKIGVVYGNPETTTGGNALKFYSSVRLDIRKVSAIKDKDLIIGNQT 247

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PFKQV+FDIMY EGIS  GE+ID+GVK +I++K+GA++S+ G RLGQG+
Sbjct: 248 KVKVVKNKVAPPFKQVDFDIMYNEGISKVGEIIDMGVKLNIIEKAGAYYSYNGIRLGQGK 307

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           EN+K +L+ N   A+ IE  +R 
Sbjct: 308 ENAKSYLKTNYTTADEIEQKIRN 330


>gi|269960384|ref|ZP_06174757.1| recA protein [Vibrio harveyi 1DA3]
 gi|269834811|gb|EEZ88897.1| recA protein [Vibrio harveyi 1DA3]
          Length = 347

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/347 (60%), Positives = 281/347 (80%), Gaps = 4/347 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+K+GAW+S++G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYQGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
            N+  +LREN EI + I++ LR+   L++ +L + P    K + +++
Sbjct: 302 ANACNYLRENPEIGKTIDTKLREM--LLSPALPEAPESGEKSEQEEE 346


>gi|238798515|ref|ZP_04641993.1| hypothetical protein ymoll0001_9180 [Yersinia mollaretii ATCC
           43969]
 gi|238717602|gb|EEQ09440.1| hypothetical protein ymoll0001_9180 [Yersinia mollaretii ATCC
           43969]
          Length = 354

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 207/323 (64%), Positives = 267/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQRAGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGDVVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN  +A  ++  LR+
Sbjct: 304 ANASNYLKENPAVAAELDKKLRE 326


>gi|15598813|ref|NP_252307.1| recombinase A [Pseudomonas aeruginosa PAO1]
 gi|107103131|ref|ZP_01367049.1| hypothetical protein PaerPA_01004200 [Pseudomonas aeruginosa PACS2]
 gi|116051614|ref|YP_789547.1| recombinase A [Pseudomonas aeruginosa UCBPP-PA14]
 gi|152984834|ref|YP_001346907.1| recombinase A [Pseudomonas aeruginosa PA7]
 gi|218890158|ref|YP_002439022.1| recombinase A [Pseudomonas aeruginosa LESB58]
 gi|313108975|ref|ZP_07794950.1| RecA protein [Pseudomonas aeruginosa 39016]
 gi|132233|sp|P08280|RECA_PSEAE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|122260757|sp|Q02R89|RECA_PSEAB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166220668|sp|A6V1H2|RECA_PSEA7 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226737762|sp|B7V8D1|RECA_PSEA8 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|9949775|gb|AAG07005.1|AE004782_3 RecA protein [Pseudomonas aeruginosa PAO1]
 gi|45384|emb|CAA36504.1| unnamed protein product [Pseudomonas aeruginosa]
 gi|45414|emb|CAA29173.1| unnamed protein product [Pseudomonas aeruginosa]
 gi|115586835|gb|ABJ12850.1| RecA protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|150959992|gb|ABR82017.1| protein RecA [Pseudomonas aeruginosa PA7]
 gi|218770381|emb|CAW26146.1| RecA protein [Pseudomonas aeruginosa LESB58]
 gi|310881452|gb|EFQ40046.1| RecA protein [Pseudomonas aeruginosa 39016]
          Length = 346

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/322 (64%), Positives = 268/322 (83%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKRALAAALGQIERQFGKGAVMRMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAEAQKQGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF+Q EF I+YG+GI   GE+IDLGV+  +V+KSGAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKVSPPFRQAEFQILYGKGIYRTGEIIDLGVQLGLVEKSGAWYSYQGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N+  +L +N EI   +E  +R
Sbjct: 302 ANAAKYLEDNPEIGSVLEKTIR 323


>gi|156975769|ref|YP_001446676.1| recombinase A [Vibrio harveyi ATCC BAA-1116]
 gi|156527363|gb|ABU72449.1| hypothetical protein VIBHAR_03513 [Vibrio harveyi ATCC BAA-1116]
          Length = 354

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/347 (60%), Positives = 281/347 (80%), Gaps = 4/347 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 11  NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 68

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTG
Sbjct: 69  EIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 128

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 129 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 188

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T
Sbjct: 189 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 248

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+K+GAW+S++G ++GQG+
Sbjct: 249 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYQGDKIGQGK 308

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
            N+  +LREN EI + I++ LR+   L++ +L + P    K + +++
Sbjct: 309 ANACNYLRENPEIGKTIDAKLREM--LLSPALPEAPESGEKSEQEEE 353


>gi|307132213|ref|YP_003884229.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Dickeya dadantii 3937]
 gi|306529742|gb|ADM99672.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Dickeya dadantii 3937]
          Length = 358

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/323 (64%), Positives = 270/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG+GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGVGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQRGGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ + + G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGEEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+ +GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINTYGELVDLGVKFKMIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  FL+EN  I+  ++  LR+
Sbjct: 304 ANACNFLKENPAISAELDKKLRE 326


>gi|295395410|ref|ZP_06805609.1| recombination protein A [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971732|gb|EFG47608.1| recombination protein A [Brevibacterium mcbrellneri ATCC 49030]
          Length = 350

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/330 (63%), Positives = 269/330 (81%), Gaps = 2/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALE ALSQ++R YGKG+IM+LGSQ    + IE + +GSL LD+ALGIGG P+GR++
Sbjct: 14  NKQKALETALSQVERQYGKGSIMRLGSQER--QPIEAIPTGSLALDVALGIGGLPRGRVI 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A +QK GG  AF+DAEHALD  YA KLGVD   LL+SQPDTG
Sbjct: 72  EVYGPESSGKTTVALHAVANAQKAGGLAAFIDAEHALDPEYAAKLGVDTDQLLVSQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 132 EQALEIADMLIRSGALDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + SK   +FINQ+R K+GV FGSPETT+GG ALKFY+SVRLD+RR+ ++K+     GN+T
Sbjct: 192 AHSKTTAIFINQLREKVGVFFGSPETTSGGKALKFYASVRLDVRRIETLKEGTDAVGNKT 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDI+YG+GIS  G +ID+GV+  IV KSG+WF++ G +LGQG+
Sbjct: 252 RVKVVKNKVAPPFKQAEFDIIYGQGISREGSIIDMGVENGIVRKSGSWFTYDGDQLGQGK 311

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           EN + FLR+N E+A+ IE+ +    G++ D
Sbjct: 312 ENVRNFLRDNPELADEIETKILMKLGIIED 341


>gi|153835574|ref|ZP_01988241.1| protein RecA [Vibrio harveyi HY01]
 gi|148867839|gb|EDL67070.1| protein RecA [Vibrio harveyi HY01]
          Length = 347

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/347 (60%), Positives = 281/347 (80%), Gaps = 4/347 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+K+GAW+S++G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYQGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
            N+  +LREN EI + I++ LR+   L++ +L + P    K + +++
Sbjct: 302 ANACNYLRENPEIGKTIDAKLREM--LLSPALPEAPESGEKSEQEEE 346


>gi|104783104|ref|YP_609602.1| recombinase A [Pseudomonas entomophila L48]
 gi|122402255|sp|Q1I6B7|RECA_PSEE4 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|95112091|emb|CAK16818.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Pseudomonas entomophila L48]
          Length = 355

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 210/323 (65%), Positives = 267/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKRALAAALGQIERQFGKGAVMRMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAEAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK++ PF+Q EF I+YG+GI   GE+IDLGV   +V+KSGAW+S++G ++GQG+
Sbjct: 242 RVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVAQGLVEKSGAWYSYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN  I   IE  +R+
Sbjct: 302 ANAAKYLQENPAIGAEIEKQIRE 324


>gi|322831419|ref|YP_004211446.1| recA protein [Rahnella sp. Y9602]
 gi|417635|sp|P33037|RECA_ENTAG RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|1209308|gb|AAA91766.1| recA [Pantoea agglomerans]
 gi|321166620|gb|ADW72319.1| recA protein [Rahnella sp. Y9602]
          Length = 354

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/322 (64%), Positives = 268/322 (83%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDVVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GELIDLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELIDLGVKHKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            NS  +L+EN ++A  ++  LR
Sbjct: 304 ANSCNYLKENPKVAAELDKKLR 325


>gi|238758255|ref|ZP_04619434.1| hypothetical protein yaldo0001_26680 [Yersinia aldovae ATCC 35236]
 gi|238703585|gb|EEP96123.1| hypothetical protein yaldo0001_26680 [Yersinia aldovae ATCC 35236]
          Length = 355

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 208/323 (64%), Positives = 267/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGDVVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN  IA  ++  LR+
Sbjct: 304 ANASNYLKENPAIAAELDKKLRE 326


>gi|146308037|ref|YP_001188502.1| recombinase A [Pseudomonas mendocina ymp]
 gi|145576238|gb|ABP85770.1| RecA protein [Pseudomonas mendocina ymp]
          Length = 347

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/323 (64%), Positives = 268/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI++ +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKRALAAALGQIEKQFGKGAVMRMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAEAQKNGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS A+D+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAIDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR G++K+ + + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGAVKEGEEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PF+Q EF I+YG+GI   GE+IDLGV+  +V+KSGAW+S++G ++GQG+
Sbjct: 242 RVKIVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVQQGLVEKSGAWYSYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  FL +N  +A  IE  +R+
Sbjct: 302 ANAAKFLEDNPAVAREIEGQIRE 324


>gi|49087284|gb|AAT51440.1| PA3617 [synthetic construct]
          Length = 347

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/322 (64%), Positives = 268/322 (83%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKRALAAALGQIERQFGKGAVMRMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAEAQKQGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF+Q EF I+YG+GI   GE+IDLGV+  +V+KSGAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKVSPPFRQAEFQILYGKGIYRTGEIIDLGVQLGLVEKSGAWYSYQGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N+  +L +N EI   +E  +R
Sbjct: 302 ANAAKYLEDNPEIGSVLEKTIR 323


>gi|22124791|ref|NP_668214.1| recombinase A [Yersinia pestis KIM 10]
 gi|45440236|ref|NP_991775.1| recombinase A [Yersinia pestis biovar Microtus str. 91001]
 gi|108808829|ref|YP_652745.1| recombinase A [Yersinia pestis Antiqua]
 gi|108810952|ref|YP_646719.1| recombinase A [Yersinia pestis Nepal516]
 gi|153997646|ref|ZP_02022746.1| RecA protein [Yersinia pestis CA88-4125]
 gi|162419049|ref|YP_001605468.1| recombinase A [Yersinia pestis Angola]
 gi|165925676|ref|ZP_02221508.1| protein RecA [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165936616|ref|ZP_02225183.1| protein RecA [Yersinia pestis biovar Orientalis str. IP275]
 gi|166010064|ref|ZP_02230962.1| protein RecA [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166212913|ref|ZP_02238948.1| protein RecA [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167399039|ref|ZP_02304563.1| protein RecA [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167421670|ref|ZP_02313423.1| protein RecA [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167423840|ref|ZP_02315593.1| protein RecA [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167467646|ref|ZP_02332350.1| protein RecA [Yersinia pestis FV-1]
 gi|170025590|ref|YP_001722095.1| recombinase A [Yersinia pseudotuberculosis YPIII]
 gi|218930328|ref|YP_002348203.1| recombinase A [Yersinia pestis CO92]
 gi|229838927|ref|ZP_04459086.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229896408|ref|ZP_04511576.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Yersinia pestis Pestoides A]
 gi|229899494|ref|ZP_04514635.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229901168|ref|ZP_04516291.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Yersinia pestis Nepal516]
 gi|270489351|ref|ZP_06206425.1| RecA protein [Yersinia pestis KIM D27]
 gi|294505019|ref|YP_003569081.1| recombinase A [Yersinia pestis Z176003]
 gi|17380548|sp|P37858|RECA_YERPE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|122979436|sp|Q1C422|RECA_YERPA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123373418|sp|Q1CLL1|RECA_YERPN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238687266|sp|A9R0V9|RECA_YERPG RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238688430|sp|B1JJA2|RECA_YERPY RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|21957615|gb|AAM84465.1|AE013691_4 DNA-dependent ATPase, DNA- and ATP-dependent coprotease [Yersinia
           pestis KIM 10]
 gi|45435092|gb|AAS60652.1| RecA protein [Yersinia pestis biovar Microtus str. 91001]
 gi|108774600|gb|ABG17119.1| RecA protein [Yersinia pestis Nepal516]
 gi|108780742|gb|ABG14800.1| RecA protein [Yersinia pestis Antiqua]
 gi|115348939|emb|CAL21898.1| RecA protein [Yersinia pestis CO92]
 gi|149289283|gb|EDM39363.1| RecA protein [Yersinia pestis CA88-4125]
 gi|162351864|gb|ABX85812.1| protein RecA [Yersinia pestis Angola]
 gi|165915265|gb|EDR33875.1| protein RecA [Yersinia pestis biovar Orientalis str. IP275]
 gi|165922288|gb|EDR39465.1| protein RecA [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165990971|gb|EDR43272.1| protein RecA [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166205700|gb|EDR50180.1| protein RecA [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166960589|gb|EDR56610.1| protein RecA [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167051543|gb|EDR62951.1| protein RecA [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167058010|gb|EDR67756.1| protein RecA [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|169752124|gb|ACA69642.1| recA protein [Yersinia pseudotuberculosis YPIII]
 gi|229681893|gb|EEO77986.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Yersinia pestis Nepal516]
 gi|229686986|gb|EEO79061.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229695293|gb|EEO85340.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229700482|gb|EEO88513.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Yersinia pestis Pestoides A]
 gi|262363082|gb|ACY59803.1| recombinase A [Yersinia pestis D106004]
 gi|262367008|gb|ACY63565.1| recombinase A [Yersinia pestis D182038]
 gi|270337855|gb|EFA48632.1| RecA protein [Yersinia pestis KIM D27]
 gi|294355478|gb|ADE65819.1| recombinase A [Yersinia pestis Z176003]
 gi|320016501|gb|ADW00073.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 356

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 208/323 (64%), Positives = 267/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGDVVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN  IA  ++  LR+
Sbjct: 304 ANASNYLKENPAIAAELDKKLRE 326


>gi|68171907|ref|ZP_00545229.1| RecA bacterial DNA recombination protein [Ehrlichia chaffeensis
           str. Sapulpa]
 gi|88658117|ref|YP_507893.1| recombinase A [Ehrlichia chaffeensis str. Arkansas]
 gi|123750042|sp|Q2GF90|RECA_EHRCR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|67998670|gb|EAM85400.1| RecA bacterial DNA recombination protein [Ehrlichia chaffeensis
           str. Sapulpa]
 gi|88599574|gb|ABD45043.1| recA protein [Ehrlichia chaffeensis str. Arkansas]
          Length = 357

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/322 (67%), Positives = 278/322 (86%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL++A+SQI++ +G+GAIM+L  QG+I E I+ +S+GS+ LD ALGIGGFPKGRIV
Sbjct: 10  ERQKALDSAISQIEKAFGRGAIMKL-KQGAI-EKIDSISTGSIALDTALGIGGFPKGRIV 67

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTLALH IA+SQK GG CAF+DAEHALD +YARKLGV+  +L++SQPDTG
Sbjct: 68  EIFGPESSGKTTLALHVIAESQKKGGNCAFIDAEHALDIMYARKLGVNTGDLIVSQPDTG 127

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL I + LV SGA+D+IV+DSVAALTPRAEIEGDMG+   G+QARL+S ALRKLTS +
Sbjct: 128 EQALHIVEYLVCSGAIDVIVVDSVAALTPRAEIEGDMGDQHMGLQARLLSHALRKLTSIV 187

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++ C+L+FINQ+RMKIGV++G+PETTTGGNALKFYSSVRLDIR+V +IKDKD I GNQT
Sbjct: 188 SKANCVLIFINQIRMKIGVVYGNPETTTGGNALKFYSSVRLDIRKVSAIKDKDVIIGNQT 247

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PFKQV+FDIMY EGIS  GE+ID+GVK +I++K+G+++S+   RLGQG+
Sbjct: 248 KVKVVKNKVAPPFKQVDFDIMYNEGISKVGEIIDMGVKLNIIEKAGSYYSYNSVRLGQGK 307

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           EN+K +L+ N + A  IE  +R
Sbjct: 308 ENAKSYLKANCDTAHEIEQKIR 329


>gi|311898726|dbj|BAJ31134.1| putative protein RecA [Kitasatospora setae KM-6054]
          Length = 368

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/331 (63%), Positives = 273/331 (82%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KALEAAL+QI+R +GKG++M+LG + +  E +EV+S+GS  LD+ALG+GG P+
Sbjct: 1   MAGTDREKALEAALAQIERQFGKGSVMRLGEKAN--EPVEVISTGSTALDVALGVGGIPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTTL LH  A +QK GGT AFVDAEHALD  YA+KLGVD   LL+SQ
Sbjct: 59  GRVVEIYGPESSGKTTLTLHLAANAQKAGGTVAFVDAEHALDPEYAKKLGVDTDALLVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEITDML+RSGA+D+++IDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDTGEQALEITDMLIRSGAIDLVIIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
             ++++S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     
Sbjct: 179 AGALNQSNTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTEAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A+PFKQ EFDI+YG GIS  G LID+GV+   + KSGAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAAPFKQAEFDILYGVGISREGGLIDMGVEHGFIRKSGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FL++N ++A+ IE+ ++   G+
Sbjct: 299 GQGKENARNFLKDNPQLADEIEAKIKGKLGI 329


>gi|153839205|ref|ZP_01991872.1| protein RecA [Vibrio parahaemolyticus AQ3810]
 gi|149747270|gb|EDM58256.1| protein RecA [Vibrio parahaemolyticus AQ3810]
          Length = 354

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/347 (60%), Positives = 281/347 (80%), Gaps = 4/347 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 11  NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 68

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTG
Sbjct: 69  EIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 128

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 129 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 188

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T
Sbjct: 189 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 248

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+K+GAW+S+ G ++GQG+
Sbjct: 249 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYNGDKIGQGK 308

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
            N+  +LRE+ EIA+ I++ LR+   L++ +  + PA   K + +++
Sbjct: 309 ANACNYLREHPEIAKTIDTKLREM--LLSPAQPEAPAAGEKPEQEEE 353


>gi|302385103|ref|YP_003820925.1| recA protein [Clostridium saccharolyticum WM1]
 gi|302195731|gb|ADL03302.1| recA protein [Clostridium saccharolyticum WM1]
          Length = 363

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/331 (63%), Positives = 271/331 (81%), Gaps = 1/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN  DK KAL+AAL+QI++ YGKG++M+LG  G+    +E V +G+L LDIALG+GG PK
Sbjct: 1   MNKDDKLKALDAALTQIEKAYGKGSVMKLGDSGTNMN-VETVPTGALSLDIALGLGGIPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTT+ALH IA+ QK GG   F+DAEHALD +YA+ +GVD+ NL ISQ
Sbjct: 60  GRVVEIYGPESSGKTTVALHMIAEVQKRGGIAGFIDAEHALDPVYAKSIGVDIDNLYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL
Sbjct: 120 PDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+ IS+S CI++FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLDIR++ ++K    + 
Sbjct: 180 TAIISKSNCIVLFINQLREKVGVMFGSPETTTGGRALKFYASVRLDIRKIETLKQGGDMV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ RVKVVKNK+A PFK+ EFDIM+G+GIS  G+++DL VK +IV+KSGAWF++   ++
Sbjct: 240 GNRVRVKVVKNKIAPPFKEAEFDIMFGKGISKEGDILDLAVKENIVEKSGAWFAYNNIKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQGREN+K +L++N      IE+ +R   GL
Sbjct: 300 GQGRENAKTYLQDNPAACMEIENKVRVKYGL 330


>gi|331003604|ref|ZP_08327100.1| RecA protein [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330412324|gb|EGG91716.1| RecA protein [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 389

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/357 (58%), Positives = 280/357 (78%), Gaps = 1/357 (0%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           +K M   +K  ALE+AL+QI++ YGKG++M+LG + +    +E + +GSLGLDIALG+GG
Sbjct: 14  KKVMEKSEKQAALESALTQIEKAYGKGSVMKLGDENTHMH-VETIPTGSLGLDIALGVGG 72

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            PKGRI+E+YGPESSGKTT+ALH +A++QK GG  AF+DAEHALD  YA K+GV++  L 
Sbjct: 73  IPKGRIIEVYGPESSGKTTVALHMVAEAQKLGGIAAFIDAEHALDPAYAEKIGVNINELY 132

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPD GEQALEIT+ +VRSGAVDII++DSVAAL P+ EIEGDMG+S  G+QARLMSQ L
Sbjct: 133 VSQPDNGEQALEITETMVRSGAVDIIIVDSVAALVPKGEIEGDMGDSHMGLQARLMSQGL 192

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT  +S+S CI++FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+R+V  IK   
Sbjct: 193 RKLTGIVSKSNCIVIFINQLRDKIGVMFGSPETTTGGRALKFYASVRLDVRKVEQIKQGG 252

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + G +TR+KVVKNK+A PFK+ EFDIMYG GIS  GE++DL V + ++DK GAW+S++G
Sbjct: 253 ELIGTKTRIKVVKNKVAPPFKEAEFDIMYGLGISKSGEILDLAVASDVIDKGGAWYSYEG 312

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
            ++GQGREN+K FL +N EI + IE  +R+     +++  ++   ++ DD + ++ D
Sbjct: 313 NKIGQGRENAKKFLMDNPEICKKIEEQVRETFKTTSENDDKQIEYDSVDDVEDEEFD 369


>gi|319764879|ref|YP_004128816.1| reca protein [Alicycliphilus denitrificans BC]
 gi|330827084|ref|YP_004390387.1| recA protein [Alicycliphilus denitrificans K601]
 gi|317119440|gb|ADV01929.1| recA protein [Alicycliphilus denitrificans BC]
 gi|329312456|gb|AEB86871.1| recA protein [Alicycliphilus denitrificans K601]
          Length = 369

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 214/315 (67%), Positives = 274/315 (86%), Gaps = 1/315 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG IM+LG +G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 26  IEKQFGKGTIMRLG-EGEAIEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 84

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGTCAF+DAEHALD+ YA+KLGV++ ++LISQPDTGEQALEI D LVR
Sbjct: 85  LTLQVIAEMQKLGGTCAFIDAEHALDTAYAQKLGVNINDILISQPDTGEQALEIVDSLVR 144

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT++I ++ C+++FINQ
Sbjct: 145 SGAVDLIVVDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQ 204

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK  D   GN+T+VKVVKNK++ P
Sbjct: 205 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPP 264

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FK  EFDI++GEGIS  GE+ID+GV A I++KSGAW+++ G+++GQGR+N++ FLREN +
Sbjct: 265 FKTAEFDILFGEGISREGEIIDMGVNARILEKSGAWYAYNGEKIGQGRDNAREFLRENPD 324

Query: 323 IAENIESLLRQNAGL 337
           +A  IE+ +R+  G+
Sbjct: 325 LAREIENKVREGLGI 339


>gi|296803004|gb|ADH51578.1| DNA recombinase [Burkholderia cepacia]
          Length = 287

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/286 (73%), Positives = 253/286 (88%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 2   EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFID 61

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AE
Sbjct: 62  AEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAE 121

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           IEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNA
Sbjct: 122 IEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNA 181

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+
Sbjct: 182 LKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEI 241

Query: 283 IDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE
Sbjct: 242 IDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 287


>gi|329939950|ref|ZP_08289232.1| recombinase A [Streptomyces griseoaurantiacus M045]
 gi|329300776|gb|EGG44672.1| recombinase A [Streptomyces griseoaurantiacus M045]
          Length = 376

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/331 (63%), Positives = 272/331 (82%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G + +  E IEV+ +GS  LD+ALG+GG P+
Sbjct: 4   MAGTDREKALDAALAQIERQFGKGAVMRMGDRTN--EPIEVIPTGSTALDVALGVGGLPR 61

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 62  GRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 121

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 122 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 181

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD     
Sbjct: 182 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTDAV 241

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR KVVKNK+A PFKQ EFDI+YG GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 242 GNRTRCKVVKNKVAPPFKQAEFDILYGHGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 301

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FL++N ++A  IE  +++  G+
Sbjct: 302 GQGKENARNFLKDNPDLANEIERKIKEKLGV 332


>gi|307329220|ref|ZP_07608385.1| recA protein [Streptomyces violaceusniger Tu 4113]
 gi|306885119|gb|EFN16140.1| recA protein [Streptomyces violaceusniger Tu 4113]
          Length = 379

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/331 (63%), Positives = 274/331 (82%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G + +  E IEV+ +GS  LD+ALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRMGDRPN--EPIEVIPTGSTALDVALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE+YGPESSGKTTL LH +A +Q+ GGT AFVDAEHALD  YA+KLGVD  +L++SQ
Sbjct: 59  GRVVEVYGPESSGKTTLTLHAVANAQRAGGTVAFVDAEHALDPDYAQKLGVDTDSLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V KSGAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKSGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FL++N ++A  IE  +++  G+
Sbjct: 299 GQGKENARNFLKDNPDLANEIERKIKEKLGI 329


>gi|28899324|ref|NP_798929.1| recombinase A [Vibrio parahaemolyticus RIMD 2210633]
 gi|260361826|ref|ZP_05774842.1| RecA protein [Vibrio parahaemolyticus K5030]
 gi|260878985|ref|ZP_05891340.1| RecA protein [Vibrio parahaemolyticus AN-5034]
 gi|260895458|ref|ZP_05903954.1| RecA protein [Vibrio parahaemolyticus Peru-466]
 gi|260903522|ref|ZP_05911917.1| RecA protein [Vibrio parahaemolyticus AQ4037]
 gi|31340322|sp|Q87LR1|RECA_VIBPA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|28807548|dbj|BAC60813.1| RecA protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088223|gb|EFO37918.1| RecA protein [Vibrio parahaemolyticus Peru-466]
 gi|308090465|gb|EFO40160.1| RecA protein [Vibrio parahaemolyticus AN-5034]
 gi|308108708|gb|EFO46248.1| RecA protein [Vibrio parahaemolyticus AQ4037]
 gi|308114474|gb|EFO52014.1| RecA protein [Vibrio parahaemolyticus K5030]
 gi|328474143|gb|EGF44948.1| recombinase A [Vibrio parahaemolyticus 10329]
          Length = 347

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/347 (60%), Positives = 281/347 (80%), Gaps = 4/347 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+K+GAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
            N+  +LRE+ EIA+ I++ LR+   L++ +  + PA   K + +++
Sbjct: 302 ANACNYLREHPEIAKTIDTKLREM--LLSPAQPEAPAAGEKPEQEEE 346


>gi|50955213|ref|YP_062501.1| recombination repairing protein [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951695|gb|AAT89396.1| recombination repairing protein [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 374

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 214/330 (64%), Positives = 267/330 (80%), Gaps = 2/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL  AL+QI R +GKG++M+LGS       +EVV +GS+ LD+ALGIGG P+GRIV
Sbjct: 23  DREKALVTALAQIDRQFGKGSVMRLGSDER--APVEVVPTGSIALDVALGIGGLPRGRIV 80

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA +Q+ GG  AF+DAEHALD  YARKLGVD+  LL+SQPDTG
Sbjct: 81  EIYGPESSGKTTLTLHAIANAQRAGGIAAFIDAEHALDPDYARKLGVDIDALLVSQPDTG 140

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG++D+IVIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKLT ++
Sbjct: 141 EQALEIADMLVRSGSIDLIVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTGAL 200

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++   ++FINQ+R K+GV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+T
Sbjct: 201 SQTNTTMIFINQLREKVGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVGNRT 260

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFKQ EFDI+YG GIS  G L+D GV+ ++V KSGAW++++G +LGQG+
Sbjct: 261 RVKVVKNKMAPPFKQAEFDILYGVGISHEGSLLDFGVEHALVKKSGAWYTYEGDQLGQGK 320

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           ENS+ FL  N +IA  IE+ ++   G+VAD
Sbjct: 321 ENSRNFLIANPDIAAEIENKIKIKLGIVAD 350


>gi|238761733|ref|ZP_04622708.1| hypothetical protein ykris0001_12160 [Yersinia kristensenii ATCC
           33638]
 gi|238700247|gb|EEP92989.1| hypothetical protein ykris0001_12160 [Yersinia kristensenii ATCC
           33638]
          Length = 354

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 207/323 (64%), Positives = 267/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGDVVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN  +A  ++  LR+
Sbjct: 304 ANASNYLKENPAVAAELDKKLRE 326


>gi|78173105|gb|ABB29469.1| RecA [Streptomyces argillaceus]
          Length = 376

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 210/331 (63%), Positives = 273/331 (82%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G +    E IEV+ +GS  LD+ALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRMGDRSK--EPIEVIPTGSTALDVALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++E+YGPESSGKTTL LH +A +Q+ GG  AFVDAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 59  GRVIEVYGPESSGKTTLTLHAVANAQRAGGQVAFVDAEHALDPEYAQKLGVDIDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FL++N ++A  IE  +++  G+
Sbjct: 299 GQGKENARNFLKDNPDLANEIERKIKEKLGV 329


>gi|258516256|ref|YP_003192478.1| recA protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257779961|gb|ACV63855.1| recA protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 343

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 214/322 (66%), Positives = 263/322 (81%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KALE AL+ I++ +GKGA+M+LG   S  + +EV+S+G L LDIALGIGG P+GR+V
Sbjct: 4   DKQKALERALADIEKQFGKGAVMKLGE--SPAKNVEVISTGVLSLDIALGIGGVPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A++QK GG  AFVDAEHALD  YA+KLGVD++NLL+SQPDTG
Sbjct: 62  EIYGPESSGKTTVALHVVAEAQKDGGMAAFVDAEHALDPTYAQKLGVDIENLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVD+IV+DSVAAL PRAEIEGDMG+S  G+QARLMSQALRKLT  +
Sbjct: 122 EQALEIAEALVRSGAVDVIVVDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKLTGVV 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S C ++FINQ+R K+GVMFG+PETT GG ALKFYSS+RLD+R+   IK     TGN+T
Sbjct: 182 SKSNCTIIFINQLREKVGVMFGNPETTPGGRALKFYSSIRLDVRKGEPIKQGADFTGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNKMA PFKQ EFDIM+G GIS  G L+D+ V  +I++KSGAW+S+  +RLGQGR
Sbjct: 242 KVKVVKNKMAPPFKQAEFDIMFGTGISREGTLLDVAVDLNIINKSGAWYSYNNERLGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           EN K  L+E  E+A  IE  +R
Sbjct: 302 ENVKDLLKEKQEMAREIEQKVR 323


>gi|300784251|ref|YP_003764542.1| recombination protein RecA [Amycolatopsis mediterranei U32]
 gi|11387038|sp|Q9REV6|RECA_AMYMU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|6606547|gb|AAF19203.1|AF208682_1 recombination repairing protein [Amycolatopsis mediterranei U32]
 gi|299793765|gb|ADJ44140.1| recombination protein RecA [Amycolatopsis mediterranei U32]
          Length = 348

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/329 (64%), Positives = 268/329 (81%), Gaps = 2/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KALE AL+QI + YGKG++M+LG +G     I V+ +G++ LD+ALGIGG P+GR++
Sbjct: 6   DKDKALELALAQIDKQYGKGSVMRLGEEGR--APIAVIPTGAIALDVALGIGGLPRGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA+KLGVD   LL+SQPDTG
Sbjct: 64  EVYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPDYAKKLGVDTDALLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAM 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+T
Sbjct: 184 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGGEAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFKQ EFDI+YG GIS  G LID+GV  +I+ KSGAW++++G +LGQG+
Sbjct: 244 RVKVVKNKMAPPFKQAEFDILYGHGISREGSLIDMGVDQAILRKSGAWYTYEGDQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           EN++ FLR+N +IA  IE  +++  G+ A
Sbjct: 304 ENARKFLRDNPDIANEIEKRIKEKLGIGA 332


>gi|255281677|ref|ZP_05346232.1| protein RecA [Bryantella formatexigens DSM 14469]
 gi|255267744|gb|EET60949.1| protein RecA [Bryantella formatexigens DSM 14469]
          Length = 387

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 208/335 (62%), Positives = 270/335 (80%), Gaps = 1/335 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AALSQI++ +GKG++M+LG  G     +E V +GSL LDIALG+GG PKGRIV
Sbjct: 5   EKMKALDAALSQIEKQFGKGSVMKLGDSGKNLN-VETVPTGSLSLDIALGLGGIPKGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YA ++GVD+ NL ISQPD G
Sbjct: 64  EIYGPESSGKTTVALHMVAEVQKRGGVAGFIDAEHALDPVYASRIGVDIDNLYISQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQA+EIT+ LVRSGAVDII++DSVAAL P+AEI+GDMG+S  G+QARLMSQALRKLT+ I
Sbjct: 124 EQAMEITETLVRSGAVDIIIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKLTAVI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S CI++FINQ+R KIGVMFG+PETTTGG ALKFYSS+RLD+R+  ++K    + GN T
Sbjct: 184 SKSNCIVIFINQLREKIGVMFGNPETTTGGRALKFYSSIRLDVRKGEALKQAGEVIGNHT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PFK+ EFDIM+G+GIS  G++IDL     +++KSGAW+++   ++GQGR
Sbjct: 244 RIKVVKNKIAPPFKEAEFDIMFGQGISREGDIIDLAANIGVINKSGAWYAYNDAKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           EN+K +LREN  I + +E+ +R++ GL  D    E
Sbjct: 304 ENAKAYLRENPAIMDEVEAKVREHYGLPVDKKPSE 338


>gi|308274547|emb|CBX31146.1| Protein recA [uncultured Desulfobacterium sp.]
          Length = 365

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 214/346 (61%), Positives = 280/346 (80%), Gaps = 4/346 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N +DK KA++AA+ QI+R +GKG++M+LGS+  +   I V+ +GSL LD ALG+GG P+G
Sbjct: 22  NAMDKEKAIDAAIGQIERQFGKGSVMKLGSRPVV--DIPVIPTGSLALDRALGVGGLPRG 79

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R++E++GPESSGKTTLAL  ++++QK GG  A++DAEHALD+ YA+ +GV+   LLI+QP
Sbjct: 80  RVIEVFGPESSGKTTLALSCVSEAQKQGGIAAYIDAEHALDTSYAKVIGVNCDELLIAQP 139

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQ LEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT
Sbjct: 140 DTGEQGLEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEMGDSHMGLQARLMSQALRKLT 199

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            +I ++   ++FINQ+RMKIGV+FG+PETTTGGNALKFYSSVRLDIRR  SIKD   +TG
Sbjct: 200 GTIGKTMTSVIFINQIRMKIGVVFGNPETTTGGNALKFYSSVRLDIRRTASIKDGQEVTG 259

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+TRV+VVKNKMA PF++ EFDIMY EGIS  G++ID+G    ++DKSGAW+S+ G+R+G
Sbjct: 260 NRTRVRVVKNKMAPPFREAEFDIMYNEGISKTGDIIDMGADLGVIDKSGAWYSYNGERIG 319

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGL--VADSLLQEPAINTK 351
           QGREN K FL+EN +I  +I   +R+ AG+  V + ++ E   NT+
Sbjct: 320 QGRENVKKFLKENPDIFNSIHLKVREVAGIIPVKEEIITEVKSNTE 365


>gi|300390225|gb|ADK10925.1| RecA [Thermoanaerobacterium saccharolyticum]
          Length = 343

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/330 (63%), Positives = 274/330 (83%), Gaps = 2/330 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           +++K KAL+ A+SQI+R +GKG+IM+LG    +   I+V+S+GS+ LDIALG+GG P+GR
Sbjct: 1   MIEKQKALDMAISQIERQFGKGSIMRLGDNSKL--NIDVISTGSIDLDIALGVGGVPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EI+GPESSGKTT+ALH +A++QK GGT AF+DAEHALD +YA+ +GV++ NLL+SQPD
Sbjct: 59  IIEIFGPESSGKTTIALHILAEAQKLGGTGAFIDAEHALDPVYAKNVGVNIDNLLVSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVD+IVIDSVAAL P+AEI+GDMG++  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIVEALVRSGAVDVIVIDSVAALVPKAEIDGDMGDAHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            IS++K + VFINQ+R K+GVMFG+PETT GG ALKFYS++RLD+R+V  IK  + I GN
Sbjct: 179 VISKTKSVAVFINQLREKVGVMFGNPETTPGGRALKFYSTIRLDVRKVDGIKQGNDIVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++DL     I+DKSGAW+S+   RLGQ
Sbjct: 239 RTRVKVVKNKVAPPFKQAEFDIMYGEGISREGSILDLAASIDIIDKSGAWYSYGDIRLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLV 338
           GREN+K +L+EN  IA+ IE+ +R+N  L+
Sbjct: 299 GRENAKQYLKENKAIADEIENKIRENFNLL 328


>gi|167748884|ref|ZP_02421011.1| hypothetical protein ANACAC_03658 [Anaerostipes caccae DSM 14662]
 gi|317470274|ref|ZP_07929668.1| recA bacterial DNA recombination protein [Anaerostipes sp.
           3_2_56FAA]
 gi|167651854|gb|EDR95983.1| hypothetical protein ANACAC_03658 [Anaerostipes caccae DSM 14662]
 gi|316902247|gb|EFV24167.1| recA bacterial DNA recombination protein [Anaerostipes sp.
           3_2_56FAA]
          Length = 349

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 207/346 (59%), Positives = 276/346 (79%), Gaps = 1/346 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K KAL+AAL++I++ YGKGA+M+LG   +    IE   +GSL LDIALG+GG P+
Sbjct: 1   MQQTEKLKALDAALTKIEKDYGKGAVMKLGEYQADMS-IETTPTGSLSLDIALGVGGIPR 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++EIYGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YA+ +GVD+ NL ISQ
Sbjct: 60  GRVIEIYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAQNIGVDVDNLYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQ LEI + +VRSGAVDII++DSVAAL P+AEI+GDMG+S  G+QARLMSQALRKL
Sbjct: 120 PDTGEQGLEIAETMVRSGAVDIIIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+ IS+S C ++FINQ+R K+GVMFG+PETTTGG ALKFYSS+RLD+RR+ ++K    + 
Sbjct: 180 TAIISKSNCTVIFINQLREKVGVMFGNPETTTGGRALKFYSSIRLDVRRIETLKQAGDMV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR+KVVKNK+A PFKQ EFDIM+GEGIS  G+++DL     ++ KSGAW++++G+++
Sbjct: 240 GNRTRIKVVKNKVAPPFKQAEFDIMFGEGISKEGDILDLAAGVDVIKKSGAWYAYQGEKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GQGREN+K +L+E+ E+A+ +ES +R+  GL A +    PA    D
Sbjct: 300 GQGRENAKTYLKEHPEVAQEVESAVRREYGLEAGTEDAAPAEEKPD 345


>gi|284030936|ref|YP_003380867.1| recA protein [Kribbella flavida DSM 17836]
 gi|283810229|gb|ADB32068.1| recA protein [Kribbella flavida DSM 17836]
          Length = 355

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/330 (63%), Positives = 267/330 (80%), Gaps = 2/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL  AL+QI+R  GKG++M+LG QG     IEV+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 13  DREKALATALTQIERQCGKGSVMRLGEQGK--APIEVIPTGSIALDVALGIGGLPRGRVV 70

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YARKLGVD   LL+SQPD+G
Sbjct: 71  EIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPDYARKLGVDTDALLVSQPDSG 130

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 131 EQALEIADMLIRSGAIDIVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAV 190

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ S+KD     GN+T
Sbjct: 191 SGTNTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIESLKDGTDFVGNRT 250

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDI+YG+GIS  G L+DLGV+   V K+GAWF+++  +LGQGR
Sbjct: 251 RVKVVKNKVAPPFKQAEFDIIYGQGISREGSLLDLGVEQGFVRKAGAWFTYESDQLGQGR 310

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           EN++ FLR+N ++A  +E  +++  G+  D
Sbjct: 311 ENARNFLRDNPDLANELEKKIKEKMGIGTD 340


>gi|160937429|ref|ZP_02084790.1| hypothetical protein CLOBOL_02320 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439498|gb|EDP17248.1| hypothetical protein CLOBOL_02320 [Clostridium bolteae ATCC
           BAA-613]
          Length = 388

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 206/328 (62%), Positives = 271/328 (82%), Gaps = 1/328 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           ++MN  +K KAL+AAL+QI++ YGKG++M+LG   +    IE V +GS+ LDIALG+GG 
Sbjct: 22  RDMNKDEKLKALDAALTQIEKAYGKGSVMKLGDSRANMN-IETVPTGSISLDIALGLGGV 80

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRIVE+YGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YAR +GVD+ NL I
Sbjct: 81  PKGRIVEVYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYARNIGVDIDNLYI 140

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+G+MG+S  G+QARLMSQALR
Sbjct: 141 SQPDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGEMGDSHVGLQARLMSQALR 200

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT+ IS+S CI++FINQ+R K+GVMFG+PETTTGG ALKFY+SVRLD+RR+ ++K    
Sbjct: 201 KLTAVISKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYASVRLDVRRIETLKQGGE 260

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           +TGN+ RVKVVKNK+A PFK+ EFDIM+G GIS  G+++DL VK +I++KSGAWF++ G 
Sbjct: 261 VTGNRVRVKVVKNKIAPPFKEAEFDIMFGRGISKEGDILDLAVKENIIEKSGAWFAYNGS 320

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLR 332
           ++GQGRENSK +L +N  +   +E+ +R
Sbjct: 321 KIGQGRENSKQYLSDNPAVCAEVEAKVR 348


>gi|238786912|ref|ZP_04630713.1| hypothetical protein yfred0001_18870 [Yersinia frederiksenii ATCC
           33641]
 gi|238725280|gb|EEQ16919.1| hypothetical protein yfred0001_18870 [Yersinia frederiksenii ATCC
           33641]
          Length = 369

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 213/353 (60%), Positives = 280/353 (79%), Gaps = 5/353 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 21  NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 78

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 79  EIYGPESSGKTTLTLQVIAAAQRAGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 138

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 139 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 198

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D + G++T
Sbjct: 199 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDVVVGSET 258

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 259 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 318

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N+  +L+EN  +A  ++  LR+   ++ +    E A+ T   AD+ D  + E
Sbjct: 319 ANASNYLKENPAVAAELDKKLRE---MLLNGGNGEQAVTTAAFADETDETSEE 368


>gi|238753057|ref|ZP_04614512.1| hypothetical protein yrohd0001_38490 [Yersinia rohdei ATCC 43380]
 gi|238708735|gb|EEQ00998.1| hypothetical protein yrohd0001_38490 [Yersinia rohdei ATCC 43380]
          Length = 354

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 207/323 (64%), Positives = 267/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGDVVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN  +A  ++  LR+
Sbjct: 304 ANASNYLKENPAVAAELDKKLRE 326


>gi|225388512|ref|ZP_03758236.1| hypothetical protein CLOSTASPAR_02248 [Clostridium asparagiforme
           DSM 15981]
 gi|225045443|gb|EEG55689.1| hypothetical protein CLOSTASPAR_02248 [Clostridium asparagiforme
           DSM 15981]
          Length = 375

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 207/337 (61%), Positives = 273/337 (81%), Gaps = 1/337 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   + MN  DK KAL+AAL+QI++ YGKG++M+LG  G+    IE V +GS+ LDIALG
Sbjct: 15  MVNNRNMNREDKLKALDAALTQIEKAYGKGSVMKLGDSGANMN-IETVPTGSISLDIALG 73

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG PKGRI+E+YGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YA+ +GVD+ 
Sbjct: 74  LGGVPKGRIIEVYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDID 133

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL ISQPD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+G+MG+S  G+QARLMS
Sbjct: 134 NLYISQPDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGEMGDSHVGLQARLMS 193

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT+ IS+S C+++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+RR+ ++K
Sbjct: 194 QALRKLTAVISKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRRIETLK 253

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
               + GN+ RVKVVKNK+A PFK+ EFDIM+G+GIS  G+++DL  K +I++KSGAWF+
Sbjct: 254 QGGEVIGNRVRVKVVKNKIAPPFKEAEFDIMFGKGISREGDILDLAAKDNIIEKSGAWFA 313

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           + G ++GQGREN+K +L +N +I   +E  +R   GL
Sbjct: 314 YNGSKIGQGRENAKQYLADNPDILAEVEEKVRTKYGL 350


>gi|332111369|gb|EGJ11353.1| reca protein [Rubrivivax benzoatilyticus JA2]
          Length = 348

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/337 (67%), Positives = 296/337 (87%), Gaps = 2/337 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD  K +N  +K+KAL+AAL+QI++ +GKG+IM+LG +G + E I+VVS+GS+GLD+ALG
Sbjct: 1   MDAPKPLN-AEKAKALQAALAQIEKQFGKGSIMRLG-EGEVIEDIQVVSTGSVGLDVALG 58

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG P+GR+VEIYGPESSGKTTL L  IA+ QKTGGTCAF+DAEHALD  YA+KLGV+L+
Sbjct: 59  VGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKTGGTCAFIDAEHALDIQYAQKLGVNLQ 118

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +LLISQPDTGEQALEI D LVRSG++D+IV+DSVAALTP+AEIEG+MG+SLPG+QARLMS
Sbjct: 119 DLLISQPDTGEQALEIVDALVRSGSIDLIVVDSVAALTPKAEIEGEMGDSLPGLQARLMS 178

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT++I ++  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK
Sbjct: 179 QALRKLTATIKKTNTMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGNIK 238

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             D + G++T+VKVVKNK++ PFK  EFDI+YGEGIS  GE+ID+GV A IV+KSGAW++
Sbjct: 239 KGDEVIGSETKVKVVKNKVSPPFKTAEFDILYGEGISREGEIIDMGVNARIVEKSGAWYA 298

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           + G+++GQG++N++ FLREN +IA  IE+ +R++ G+
Sbjct: 299 YNGEKIGQGKDNAREFLRENPDIAREIENKVRESLGI 335


>gi|51595173|ref|YP_069364.1| recombinase A [Yersinia pseudotuberculosis IP 32953]
 gi|153947092|ref|YP_001402197.1| recombinase A [Yersinia pseudotuberculosis IP 31758]
 gi|186894188|ref|YP_001871300.1| recombinase A [Yersinia pseudotuberculosis PB1/+]
 gi|59798204|sp|Q66E70|RECA_YERPS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166918717|sp|A7FLR9|RECA_YERP3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238691404|sp|B2K5X7|RECA_YERPB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|51588455|emb|CAH20063.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Yersinia pseudotuberculosis IP 32953]
 gi|152958587|gb|ABS46048.1| protein RecA [Yersinia pseudotuberculosis IP 31758]
 gi|186697214|gb|ACC87843.1| recA protein [Yersinia pseudotuberculosis PB1/+]
          Length = 356

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 208/323 (64%), Positives = 267/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGDVVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN  IA  ++  LR+
Sbjct: 304 ANASNYLKENPAIAAELDKKLRE 326


>gi|261820429|ref|YP_003258535.1| recombinase A [Pectobacterium wasabiae WPP163]
 gi|261604442|gb|ACX86928.1| recA protein [Pectobacterium wasabiae WPP163]
          Length = 357

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/323 (64%), Positives = 267/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD + + G++T
Sbjct: 184 KQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  FL+EN  IA  ++  LR+
Sbjct: 304 ANACNFLKENSAIAAELDKKLRE 326


>gi|296803000|gb|ADH51576.1| DNA recombinase [Burkholderia cenocepacia]
          Length = 288

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/285 (73%), Positives = 252/285 (88%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 4   EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFID 63

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AE
Sbjct: 64  AEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAE 123

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           IEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNA
Sbjct: 124 IEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNA 183

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+
Sbjct: 184 LKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEI 243

Query: 283 IDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  I
Sbjct: 244 IDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 288


>gi|225874847|ref|YP_002756306.1| recA protein [Acidobacterium capsulatum ATCC 51196]
 gi|225793263|gb|ACO33353.1| recA protein [Acidobacterium capsulatum ATCC 51196]
          Length = 360

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 206/334 (61%), Positives = 281/334 (84%), Gaps = 1/334 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+S+A+E ALSQI++ +GKG+IM+LGS+ ++   I  +S+GS+  D ALG+GG P+GR+V
Sbjct: 4   DRSRAVELALSQIEKQFGKGSIMRLGSKEAVVP-ISTISTGSISFDAALGVGGVPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTT+ L  IA++QK GG  AFVDAEHALD IYA+KLGVD+ NLL+SQPD G
Sbjct: 63  EIFGPESSGKTTITLQIIAEAQKAGGMAAFVDAEHALDPIYAQKLGVDVDNLLVSQPDYG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ LVRSGA+D++V+DSVAAL P+AE++G+MG+S  G+QARLMSQALRKLT ++
Sbjct: 123 EQALEITEALVRSGAIDVLVVDSVAALVPKAELDGEMGDSHVGLQARLMSQALRKLTGTV 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S+  L+FINQ+R KIGVMFG+PETTTGG ALKFYSSVR+DIRR+ ++K+ D++ G++T
Sbjct: 183 SKSRTCLIFINQIREKIGVMFGNPETTTGGRALKFYSSVRVDIRRIAAVKEGDTVVGSRT 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A+PF++ EFDI+YGEGIS  G+++DL V  +IV+KSGAW+S+ G+R+GQGR
Sbjct: 243 RVKIVKNKVAAPFREAEFDILYGEGISREGDVLDLAVAHNIVEKSGAWYSYSGERIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
           EN + FL+EN +  + I++ LRQ  G+   ++ Q
Sbjct: 303 ENVRSFLKENRDTFQRIDTQLRQKLGITLANVPQ 336


>gi|311350341|gb|ADP92369.1| recombinase [Burkholderia gladioli]
          Length = 295

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 213/296 (71%), Positives = 258/296 (87%), Gaps = 1/296 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL AAL+QI++ +GKG+IM+LG      E I+VVS+GSLGLDIALG+GG P+GR+VEIY
Sbjct: 1   KALAAALAQIEKQFGKGSIMKLGD-AEAKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQA
Sbjct: 60  GPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+
Sbjct: 120 LEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRT 179

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVK
Sbjct: 180 NCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVK 239

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           VVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G ++GQG
Sbjct: 240 VVKNKVSPPFRESIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGDKIGQG 295


>gi|238791371|ref|ZP_04635010.1| hypothetical protein yinte0001_31280 [Yersinia intermedia ATCC
           29909]
 gi|238729504|gb|EEQ21019.1| hypothetical protein yinte0001_31280 [Yersinia intermedia ATCC
           29909]
          Length = 354

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 207/323 (64%), Positives = 267/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGDVVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN  +A  ++  LR+
Sbjct: 304 ANASNYLKENPAVAAELDKKLRE 326


>gi|59798225|sp|Q6AE00|RECA_LEIXX RecName: Full=Protein RecA; AltName: Full=Recombinase A
          Length = 357

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 214/330 (64%), Positives = 267/330 (80%), Gaps = 2/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL  AL+QI R +GKG++M+LGS       +EVV +GS+ LD+ALGIGG P+GRIV
Sbjct: 6   DREKALVTALAQIDRQFGKGSVMRLGSDER--APVEVVPTGSIALDVALGIGGLPRGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA +Q+ GG  AF+DAEHALD  YARKLGVD+  LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLHAIANAQRAGGIAAFIDAEHALDPDYARKLGVDIDALLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG++D+IVIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKLT ++
Sbjct: 124 EQALEIADMLVRSGSIDLIVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++   ++FINQ+R K+GV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+T
Sbjct: 184 SQTNTTMIFINQLREKVGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFKQ EFDI+YG GIS  G L+D GV+ ++V KSGAW++++G +LGQG+
Sbjct: 244 RVKVVKNKMAPPFKQAEFDILYGVGISHEGSLLDFGVEHALVKKSGAWYTYEGDQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           ENS+ FL  N +IA  IE+ ++   G+VAD
Sbjct: 304 ENSRNFLIANPDIAAEIENKIKIKLGIVAD 333


>gi|238784096|ref|ZP_04628110.1| hypothetical protein yberc0001_12020 [Yersinia bercovieri ATCC
           43970]
 gi|238714942|gb|EEQ06940.1| hypothetical protein yberc0001_12020 [Yersinia bercovieri ATCC
           43970]
          Length = 354

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 207/323 (64%), Positives = 267/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGDVVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN  +A  ++  LR+
Sbjct: 304 ANASNYLKENPAVAAELDKKLRE 326


>gi|251797369|ref|YP_003012100.1| recA protein [Paenibacillus sp. JDR-2]
 gi|247544995|gb|ACT02014.1| recA protein [Paenibacillus sp. JDR-2]
          Length = 351

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 217/331 (65%), Positives = 267/331 (80%), Gaps = 2/331 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  ALE AL QI++ +GKG+IM+LG   S    +E V SGS+ LDIALGIGG P+GRI+
Sbjct: 3   DRRAALEMALRQIEKQFGKGSIMKLGE--STHMQVETVPSGSIALDIALGIGGLPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E YGPESSGKTT+ALH IA+ Q+ GG  AF+DAEHALD +YA KLGV++  LL+SQPDTG
Sbjct: 61  ECYGPESSGKTTVALHAIAEVQRIGGQAAFIDAEHALDPLYASKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL  +I
Sbjct: 121 EQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLGGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR+ +IK  + + GN+T
Sbjct: 181 SKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLEVRRIETIKQGNDMVGNRT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PFKQ E DIMYGEGIS  G L+D+GV+  IV KSGAWFS+ G RLGQGR
Sbjct: 241 RIKVVKNKVAPPFKQAEIDIMYGEGISREGSLVDIGVEMDIVQKSGAWFSYNGDRLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           EN+K FL+++ E+A  IE  +R+ + L A +
Sbjct: 301 ENAKQFLKDHPEVAAVIEKQIREQSNLSASA 331


>gi|117919575|ref|YP_868767.1| recombinase A [Shewanella sp. ANA-3]
 gi|166220681|sp|A0KU92|RECA_SHESA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|117611907|gb|ABK47361.1| recA protein [Shewanella sp. ANA-3]
          Length = 357

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 210/323 (65%), Positives = 266/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL A LSQI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P GRIV
Sbjct: 6   NKEKALAAVLSQIEKQFGKGSIMKLGEDRSM--DVETISTGSLSLDVALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YG+GI+  GEL+DLGV   +++K+GAW+S+KG ++GQGR
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L EN  IA  I+  LR+
Sbjct: 304 ANAGKYLTENPAIAAEIDKTLRE 326


>gi|299067887|emb|CBJ39100.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Ralstonia solanacearum CMR15]
          Length = 352

 Score =  445 bits (1145), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 215/316 (68%), Positives = 273/316 (86%), Gaps = 2/316 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G   +  E ++VVS+GSLGLD+ALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 25  IEKQFGKGSIMKMGD--AEVEPVQVVSTGSLGLDVALGVGGLPRGRVVEIYGPESSGKTT 82

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +A+ QK GGTCAF+DAEHALD  YA KLGV + +LLISQPDTGEQALEI D LVR
Sbjct: 83  LTLQVVAEMQKLGGTCAFIDAEHALDVTYAGKLGVKVPDLLISQPDTGEQALEIADALVR 142

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG+VD+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 143 SGSVDLIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTGTIKRTNCMVIFINQ 202

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T+VKVVKNK+A P
Sbjct: 203 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKRGDEVVGNETKVKVVKNKVAPP 262

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YG G+S  GE+IDLGV+A +V+KSGAW+S+ G+R+GQGR+N + FLREN E
Sbjct: 263 FREAIFDILYGAGVSREGEIIDLGVEAKVVEKSGAWYSYNGERIGQGRDNCREFLRENAE 322

Query: 323 IAENIESLLRQNAGLV 338
           +A  IE+ +R++ G+V
Sbjct: 323 LAREIENKVREHLGVV 338


>gi|221069768|ref|ZP_03545873.1| recA protein [Comamonas testosteroni KF-1]
 gi|220714791|gb|EED70159.1| recA protein [Comamonas testosteroni KF-1]
          Length = 369

 Score =  445 bits (1145), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 217/316 (68%), Positives = 274/316 (86%), Gaps = 1/316 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG IM+LG +G   E I+VVS+GSLGLDIALG+GG P+GR++EIYGPESSGKT
Sbjct: 24  QIEKQFGKGTIMKLG-EGEAIEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKT 82

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK  GTCAF+DAEHALD+ YA+KLGV+L +LLISQPDTGEQALEI D LV
Sbjct: 83  TLTLQVIAEMQKQAGTCAFIDAEHALDTGYAQKLGVNLNDLLISQPDTGEQALEICDSLV 142

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD+IVIDSVAALTP+AEIEG+MG++LPG+QARLMSQALRKLT++I ++ C+++FIN
Sbjct: 143 RSGAVDLIVIDSVAALTPKAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFIN 202

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK  D   GN+T+VKVVKNK++ 
Sbjct: 203 QIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSP 262

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PFK  EFDI++GEGIS  GE++D+GV A I++KSGAW+++ G+++GQGR+NS+ FLREN 
Sbjct: 263 PFKTAEFDILFGEGISREGEILDMGVNAKILEKSGAWYAYNGEKIGQGRDNSREFLRENP 322

Query: 322 EIAENIESLLRQNAGL 337
            +A  IE+ +R + G+
Sbjct: 323 ALAIEIENKVRDSLGI 338


>gi|296387879|ref|ZP_06877354.1| recombinase A [Pseudomonas aeruginosa PAb1]
          Length = 327

 Score =  445 bits (1145), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/322 (64%), Positives = 268/322 (83%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKRALAAALGQIERQFGKGAVMRMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAEAQKQGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF+Q EF I+YG+GI   GE+IDLGV+  +V+KSGAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKVSPPFRQAEFQILYGKGIYRTGEIIDLGVQLGLVEKSGAWYSYQGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N+  +L +N EI   +E  +R
Sbjct: 302 ANAAKYLEDNPEIGSVLEKTIR 323


>gi|323141085|ref|ZP_08075990.1| RecA protein [Phascolarctobacterium sp. YIT 12067]
 gi|322414461|gb|EFY05275.1| RecA protein [Phascolarctobacterium sp. YIT 12067]
          Length = 350

 Score =  445 bits (1145), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 214/322 (66%), Positives = 266/322 (82%), Gaps = 1/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+ A+ QI++ +GKG+IM LG + S    IEV+ +G+L LDIALG+GG P+GR++
Sbjct: 4   DKKKALDMAMHQIEKDFGKGSIMMLG-EASAKMNIEVIPTGALSLDIALGVGGIPRGRVI 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA++QK GG  AF+DAEHALD  YAR LGVD+ +LLISQPD G
Sbjct: 63  EIYGPESSGKTTVALHMIAEAQKMGGYAAFIDAEHALDPEYARHLGVDIDDLLISQPDNG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  I
Sbjct: 123 EQALEIADALVRSGAIDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGLI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+SKC  +FINQ+R K+GVMFG+PETTTGG ALKFYS+VR+D+RR+ ++K+ + + G++T
Sbjct: 183 SKSKCATIFINQIREKVGVMFGNPETTTGGRALKFYSTVRMDVRRIDTLKNGNDVIGSRT 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EFDIMYG+GIS  G L+DLG    I++KSGAW+S+   RLGQG+
Sbjct: 243 RVKVVKNKVAPPFRQAEFDIMYGKGISHEGCLVDLGADLDIINKSGAWYSYGDIRLGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           E  K FLREN EIA+ IE+ +R
Sbjct: 303 EKVKDFLRENPEIAQEIEAKIR 324


>gi|210622626|ref|ZP_03293286.1| hypothetical protein CLOHIR_01234 [Clostridium hiranonis DSM 13275]
 gi|210154127|gb|EEA85133.1| hypothetical protein CLOHIR_01234 [Clostridium hiranonis DSM 13275]
          Length = 361

 Score =  445 bits (1145), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/347 (60%), Positives = 278/347 (80%), Gaps = 6/347 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL  AL +I++ +GKG++M+LG   S+   I+ +S+GS+GLDIA+GIGG PKGRIV
Sbjct: 6   EKLKALNEALGKIEKDFGKGSVMRLGEATSL--EIDTISTGSIGLDIAIGIGGLPKGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A++QK GG  AF+DAEHALD +YA+ LGVD++NL+ISQPDTG
Sbjct: 64  EIYGPESSGKTTVALHCVAEAQKDGGIAAFIDAEHALDPVYAKALGVDVENLIISQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L+RSGA+DIIV+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT SI
Sbjct: 124 EQALEIAEALIRSGAIDIIVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGSI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+R K+G+MFG+PETTTGG ALKFYSSVRLD+R++ +IK  D + G++T
Sbjct: 184 KKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVLGSRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDIMYG+GIS  G+L+D+     +V KSG+W++++  +LGQGR
Sbjct: 244 RVKVVKNKVAPPFKQAEFDIMYGQGISKIGDLLDIAADIDVVKKSGSWYNYQDVKLGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL----VADSLLQEPAINTKDD 353
           EN K FL +N+++   IE+ +R    L      D +++E   +TK D
Sbjct: 304 ENVKKFLEDNMDLTNEIEAKVRHYYHLDGTSPEDDVVEEVKADTKKD 350


>gi|308237913|emb|CBK52103.1| RecA protein [Acidithiobacillus ferrooxidans]
          Length = 286

 Score =  445 bits (1145), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 208/286 (72%), Positives = 250/286 (87%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           V S+GSLGLD+ALG+GG P+GR+VEIYGPESSGKTTL LH IA  Q  GGT AF+DAEHA
Sbjct: 1   VYSTGSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLTLHAIASCQAAGGTAAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YA KLGVDL+NLLISQPDTGEQALEI DMLVRSGAVD+IVIDSVAALTP+AEIEGD
Sbjct: 61  LDPGYAHKLGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGD 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+S  G+QARLMSQALRKLT++ISR+  +++FINQ+RMKIGVM+GSPETTTGGNALKFY
Sbjct: 121 MGDSHVGLQARLMSQALRKLTANISRTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFY 180

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
           +SVRLDIRR+G+IK  D + GN TRVKVVKNK+A PF++ EF I YGEGIS   EL+DLG
Sbjct: 181 ASVRLDIRRIGAIKKSDEVVGNDTRVKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLG 240

Query: 287 VKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           VK  IV+KSGAW+S++G+R+GQG++N++ +L+E+ E+A NIE  +R
Sbjct: 241 VKFDIVEKSGAWYSYQGERIGQGKDNARQYLKEHPELAANIEQRIR 286


>gi|119476685|ref|ZP_01616995.1| recombinase A [marine gamma proteobacterium HTCC2143]
 gi|119449941|gb|EAW31177.1| recombinase A [marine gamma proteobacterium HTCC2143]
          Length = 352

 Score =  445 bits (1145), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 217/323 (67%), Positives = 273/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AAL+QI+R +GKG+IM++G +    E I  +S+GSLGLD+ALGIGG PKGRIV
Sbjct: 6   NKEKALQAALAQIERQFGKGSIMKMGEEAR--EAIPAISTGSLGLDVALGIGGLPKGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAF+DAEHALD  YA KLGV++ ++L+SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLSVIAEAQKAGATCAFIDAEHALDPGYAEKLGVNIDDMLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSG+VD+IV+DSVAALTP+AEIEGD+G+S  G+ AR+MSQA+RK+T +I
Sbjct: 124 EQALEITDMLVRSGSVDVIVVDSVAALTPKAEIEGDIGDSHMGLAARMMSQAMRKMTGNI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++KD D I GN+T
Sbjct: 184 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKDGDEIVGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF I+YG+GI   GE+IDLGVK  +VDK+GAW+++ G ++GQG+
Sbjct: 244 RVKVVKNKVAPPFKQAEFQILYGKGIYRMGEVIDLGVKQGLVDKAGAWYAYNGNKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  FL +N +IA  IE  +RQ
Sbjct: 304 ANAAKFLLDNPDIASVIEGKIRQ 326


>gi|83746096|ref|ZP_00943151.1| RecA protein [Ralstonia solanacearum UW551]
 gi|207728006|ref|YP_002256400.1| recombinase A [Ralstonia solanacearum MolK2]
 gi|207742407|ref|YP_002258799.1| protein reca (recombinase a) [Ralstonia solanacearum IPO1609]
 gi|83727279|gb|EAP74402.1| RecA protein [Ralstonia solanacearum UW551]
 gi|206591250|emb|CAQ56862.1| protein reca (recombinase a) [Ralstonia solanacearum MolK2]
 gi|206593797|emb|CAQ60724.1| protein reca (recombinase a) [Ralstonia solanacearum IPO1609]
          Length = 352

 Score =  445 bits (1145), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 215/316 (68%), Positives = 273/316 (86%), Gaps = 2/316 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G   +  E ++VVS+GSLGLD+ALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 25  IEKQFGKGSIMKMGD--AEVEPVQVVSTGSLGLDVALGVGGLPRGRVVEIYGPESSGKTT 82

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +A+ QK GGTCAF+DAEHALD  YA KLGV + +LLISQPDTGEQALEI D LVR
Sbjct: 83  LTLQVVAEMQKLGGTCAFIDAEHALDVTYADKLGVKVPDLLISQPDTGEQALEIADALVR 142

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG+VD+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 143 SGSVDLIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 202

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T+VKVVKNK+A P
Sbjct: 203 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKRGDEVVGNETKVKVVKNKVAPP 262

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YG G+S  GE+IDLGV+A +V+KSGAW+S+ G+R+GQGR+N + FLREN E
Sbjct: 263 FREAIFDILYGAGVSREGEIIDLGVEAKVVEKSGAWYSYNGERIGQGRDNCREFLRENPE 322

Query: 323 IAENIESLLRQNAGLV 338
           +A  IE+ +R++ G+V
Sbjct: 323 LAREIENKVREHLGVV 338


>gi|57239577|ref|YP_180713.1| recombinase A [Ehrlichia ruminantium str. Welgevonden]
 gi|58579565|ref|YP_197777.1| recombinase A [Ehrlichia ruminantium str. Welgevonden]
 gi|58617618|ref|YP_196817.1| recombinase A [Ehrlichia ruminantium str. Gardel]
 gi|76363325|sp|Q5FGJ5|RECA_EHRRG RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|76363326|sp|Q5HA31|RECA_EHRRW RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|57161656|emb|CAH58585.1| RecA protein (Recombinase A) [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417230|emb|CAI28343.1| RecA protein (Recombinase A) [Ehrlichia ruminantium str. Gardel]
 gi|58418191|emb|CAI27395.1| RecA protein (Recombinase A) [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 357

 Score =  445 bits (1145), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/322 (67%), Positives = 277/322 (86%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+ A+SQI++ +G+GAIM+L  QG+I E I+ + +GS+ LD ALGIGGFPKGRI+
Sbjct: 10  DRQKALDNAISQIEKAFGRGAIMKL-KQGAI-EKIDSIPTGSIALDTALGIGGFPKGRII 67

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTLALH IA+SQK GG CAF+DAEHALD +YARKLGV+  +L++SQPDTG
Sbjct: 68  EIFGPESSGKTTLALHVIAESQKKGGNCAFIDAEHALDIMYARKLGVNTGDLIVSQPDTG 127

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL I + L+ SGA+D+IV+DSVAALTPRAEIEGDMG+   G+QARL+S ALRKLTS +
Sbjct: 128 EQALHIVEYLICSGAIDVIVVDSVAALTPRAEIEGDMGDQHMGLQARLLSHALRKLTSIV 187

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++ CIL+FINQ+RMKIGV++G+PETTTGGNALKFYSSVRLDIR+V +IKDKD I GNQT
Sbjct: 188 SKANCILIFINQIRMKIGVVYGNPETTTGGNALKFYSSVRLDIRKVSAIKDKDVIIGNQT 247

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PFKQV+FDIMY EGIS  GE+ID+GVK +IV+K+G+++S+   RLGQG+
Sbjct: 248 KVKVVKNKVAPPFKQVDFDIMYNEGISKVGEIIDMGVKLNIVEKAGSYYSYNSVRLGQGK 307

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           EN+K++L+ N   A+ IE  +R
Sbjct: 308 ENAKLYLKNNPSTADEIEQKIR 329


>gi|329754417|gb|ADP92374.2| recombinase [Burkholderia cenocepacia]
          Length = 302

 Score =  445 bits (1145), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 216/301 (71%), Positives = 265/301 (88%), Gaps = 1/301 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301

Query: 311 E 311
           +
Sbjct: 302 D 302


>gi|121998434|ref|YP_001003221.1| recombinase A [Halorhodospira halophila SL1]
 gi|166220650|sp|A1WXK7|RECA_HALHL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|121589839|gb|ABM62419.1| recA protein [Halorhodospira halophila SL1]
          Length = 354

 Score =  445 bits (1145), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 219/323 (67%), Positives = 273/323 (84%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL AAL QI++ +GKGA+M++G   ++   ++ +S+GSL LD+ALGIGG P+GR+V
Sbjct: 4   DRKKALGAALGQIEKQFGKGAVMRMGDARAVRGDVKSISTGSLALDVALGIGGLPRGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA++QK GG  AFVDAEHALD  YA  +GVD+ +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLHIIAEAQKAGGAAAFVDAEHALDPDYAEAVGVDINDLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG +D++V+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT SI
Sbjct: 124 EQALEIADMLVRSGGLDVVVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGSI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVR+DIRR+G+IK  D + GN+T
Sbjct: 184 QRSNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRMDIRRLGAIKKGDEVLGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFKQ EF+I+YGEGIS  GE+ID+GV    VDKSGAW+S+ G R+GQG+
Sbjct: 244 RVKVVKNKMAPPFKQAEFEILYGEGISREGEIIDMGVAQGFVDKSGAWYSYNGDRIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           +N++ FLR N +IA +IE+ +R+
Sbjct: 304 DNARQFLRNNPQIAADIEARIRE 326


>gi|227114948|ref|ZP_03828604.1| recombinase A [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
 gi|227329401|ref|ZP_03833425.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum WPP14]
          Length = 357

 Score =  445 bits (1145), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 212/343 (61%), Positives = 274/343 (79%), Gaps = 2/343 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++T
Sbjct: 184 KQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
            N+  FL+EN  IA  ++  LR+      + L    A N+ D+
Sbjct: 304 ANACNFLKENPAIAAELDKKLREMLLHKGNELTPAAAGNSHDE 346


>gi|300705087|ref|YP_003746690.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Ralstonia solanacearum CFBP2957]
 gi|299072751|emb|CBJ44104.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Ralstonia solanacearum CFBP2957]
          Length = 352

 Score =  445 bits (1145), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 215/316 (68%), Positives = 273/316 (86%), Gaps = 2/316 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G   +  E ++VVS+GSLGLD+ALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 25  IEKQFGKGSIMKMGD--AEVEPVQVVSTGSLGLDVALGVGGLPRGRVVEIYGPESSGKTT 82

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +A+ QK GGTCAF+DAEHALD  YA KLGV + +LLISQPDTGEQALEI D LVR
Sbjct: 83  LTLQVVAEMQKLGGTCAFIDAEHALDVTYADKLGVKVPDLLISQPDTGEQALEIADALVR 142

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG+VD+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 143 SGSVDLIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 202

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T+VKVVKNK+A P
Sbjct: 203 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKRGDDVVGNETKVKVVKNKVAPP 262

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YG G+S  GE+IDLGV+A +V+KSGAW+S+ G+R+GQGR+N + FLREN E
Sbjct: 263 FREAIFDILYGAGVSREGEIIDLGVEAKVVEKSGAWYSYNGERIGQGRDNCREFLRENPE 322

Query: 323 IAENIESLLRQNAGLV 338
           +A  IE+ +R++ G+V
Sbjct: 323 LAREIENKVREHLGVV 338


>gi|325277019|ref|ZP_08142684.1| recombinase A [Pseudomonas sp. TJI-51]
 gi|324097855|gb|EGB96036.1| recombinase A [Pseudomonas sp. TJI-51]
          Length = 355

 Score =  445 bits (1145), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/323 (64%), Positives = 266/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKRALAAALGQIERQFGKGAVMRMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAEAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK++ PF+Q EF I+YG+GI   GE+IDLGV   +V+KSGAW++++G ++GQG+
Sbjct: 242 RVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVAQGLVEKSGAWYAYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L EN  I   IE  +R+
Sbjct: 302 ANAAKYLAENPAIGTEIERQIRE 324


>gi|297626494|ref|YP_003688257.1| RecA (Recombinase A) [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296922259|emb|CBL56831.1| RecA (Recombinase A) [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 372

 Score =  445 bits (1144), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 213/339 (62%), Positives = 270/339 (79%), Gaps = 2/339 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M + D++KAL+AAL+QI++ +GKG++M+LG Q   +  IE + +GS+ LDIALGIGG P+
Sbjct: 1   MAVADRNKALDAALAQIEKAHGKGSVMRLGDQA--YAQIESIPTGSVALDIALGIGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVE+YGPESSGKTT+ALH IA +Q  GG CAF+DAEHALD  YA  LGV+   LL+SQ
Sbjct: 59  GRIVEVYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPSYAHALGVNTDELLVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI D LVRSGA++++VIDSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIADTLVRSGALELLVIDSVAALTPRAEIEGEMGDSHVGLQARLMSQALRKM 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T +I  +   ++FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ S+K+ + I 
Sbjct: 179 TGAIKSANTTVIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRIESLKNGNEIV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKV KNK+A PFKQ EFDI+YG+GIS  G LID+GV A IV K+GAWF++   +L
Sbjct: 239 GNRTRVKVAKNKVAPPFKQAEFDILYGKGISREGSLIDMGVDAGIVRKAGAWFTYGDDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           GQG+EN++ FL  + E+A +IE  +R   GL A   + E
Sbjct: 299 GQGKENARTFLITHPEVASDIEHKIRVKLGLDASDEVPE 337


>gi|315650050|ref|ZP_07903129.1| recombination protein A [Eubacterium saburreum DSM 3986]
 gi|315487679|gb|EFU77983.1| recombination protein A [Eubacterium saburreum DSM 3986]
          Length = 393

 Score =  445 bits (1144), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 210/356 (58%), Positives = 282/356 (79%), Gaps = 4/356 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++  ALE+AL+QI++ YGKG++M+LG  G++   +E + +GSLGLDIALG+GG PKGRI+
Sbjct: 25  ERQVALESALTQIEKAYGKGSVMKLGD-GNLHMNVETIPTGSLGLDIALGVGGIPKGRII 83

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A++QK GG  AF+DAEHALD  YA K+GV++  L +SQPD G
Sbjct: 84  EVYGPESSGKTTVALHMVAEAQKLGGIAAFIDAEHALDPAYAEKIGVNINELYVSQPDNG 143

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ +VRSGA+DII++DSVAAL P+ EIEGDMG+S  G+QARLMSQ LRKLT  +
Sbjct: 144 EQALEITETMVRSGAIDIIIVDSVAALVPKGEIEGDMGDSHMGLQARLMSQGLRKLTGIV 203

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S CI++FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+R+V  IK    +TG +T
Sbjct: 204 SKSNCIVIFINQLRDKIGVMFGSPETTTGGRALKFYASVRLDVRKVEQIKQGGELTGTKT 263

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PFK+ EFDIMYG GIS  GE++DLGV   +++K GAW+S+ G ++GQGR
Sbjct: 264 RIKVVKNKVAPPFKEAEFDIMYGLGISKAGEILDLGVACDVIEKGGAWYSYDGNKIGQGR 323

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS---LLQEPAINTKDDADKDDTDNVE 363
           EN+K FL +N EI + +E+ +R+   L +++   L++   I+  +D + D +  VE
Sbjct: 324 ENAKKFLLDNPEIYQKLEAQIREKFKLASENGEKLIEYDPIDGAEDEEFDGSPIVE 379


>gi|253689582|ref|YP_003018772.1| recA protein [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|259563340|sp|C6DCR1|RECA_PECCP RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|251756160|gb|ACT14236.1| recA protein [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 357

 Score =  445 bits (1144), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 214/353 (60%), Positives = 277/353 (78%), Gaps = 2/353 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++T
Sbjct: 184 KQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N+  FL+EN  +A  ++  LR+      + L    A N+ D+    D  N E
Sbjct: 304 ANACNFLKENPAVAAELDKKLREMLLHKGNELTPATAGNSHDEDAFADEGNEE 356


>gi|302670998|ref|YP_003830958.1| DNA recombination protein RecA [Butyrivibrio proteoclasticus B316]
 gi|302395471|gb|ADL34376.1| DNA recombination protein RecA [Butyrivibrio proteoclasticus B316]
          Length = 358

 Score =  445 bits (1144), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 206/327 (62%), Positives = 266/327 (81%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KALEAAL QI++ +GKGA+M+LG        +E + +GSL LDIALG+GG PKGRI+
Sbjct: 5   DKQKALEAALGQIEKQFGKGAVMKLGDSSDTMN-VETIPTGSLSLDIALGLGGIPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ LH IA+ QK GG   F+DAEHALD +YA+ +GVD+ NL ISQPD+G
Sbjct: 64  EIYGPESSGKTTVTLHMIAEVQKRGGIAGFIDAEHALDPVYAKNIGVDVDNLYISQPDSG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ +VRSGA+DI+V+DSVAAL P+AEI+GDMG+S  G+QARLMSQALRKLT+ I
Sbjct: 124 EQALEITETMVRSGAIDIVVVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKLTAVI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S C +VFINQ+R K+GVMFG+PETTTGG ALKFYSSVR+D+RR+ +IK    + GN+T
Sbjct: 184 SKSNCTVVFINQLREKVGVMFGNPETTTGGRALKFYSSVRMDVRRIEAIKQNGEVIGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK+ EFDIM+G+GIS  G+++DL     IV+KSGAW+ ++G+++GQGR
Sbjct: 244 RVKVVKNKIAPPFKEAEFDIMFGKGISATGDILDLAAGVDIVNKSGAWYQYEGEKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K++L  N  I   I++ +R + GL
Sbjct: 304 ENAKLYLENNPAILAEIDAKVRAHYGL 330


>gi|255524214|ref|ZP_05391173.1| recA protein [Clostridium carboxidivorans P7]
 gi|255512039|gb|EET88320.1| recA protein [Clostridium carboxidivorans P7]
          Length = 395

 Score =  445 bits (1144), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/365 (61%), Positives = 288/365 (78%), Gaps = 17/365 (4%)

Query: 2   DYRKEMNIV-----DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLD 56
           + RKE+ ++     +K KALEAAL QI++ +GKG+IM+LG   ++   IE +S+G L LD
Sbjct: 30  NLRKEVTLLGNVNGEKLKALEAALGQIEKQFGKGSIMKLGEHSTL--DIEAISTGCLDLD 87

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
           IALGIGG P+GR+VEIYGPESSGKTT+ALH +A++QK  G  AF+DAEHALD +YAR LG
Sbjct: 88  IALGIGGVPRGRVVEIYGPESSGKTTVALHIVAEAQKAAGAAAFIDAEHALDPVYARALG 147

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           VD++NL++SQPDTGEQALEI + LVRSGAVD+IV+DSVAAL P+AEIEG+MG+S  G+QA
Sbjct: 148 VDIENLIVSQPDTGEQALEIAEALVRSGAVDVIVVDSVAALVPKAEIEGEMGDSHVGLQA 207

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           RLMSQALRKLT +I++SKC+++FINQ+R K+GVMFG+PETT GG ALKFY+SVR+DIRR+
Sbjct: 208 RLMSQALRKLTGAINKSKCVIIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDIRRI 267

Query: 237 GSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
            SIK  DSI GN+TRVKV KNK+A PFKQ EFDIMY +GIS  G ++D+GV+  +V KSG
Sbjct: 268 DSIKQGDSIVGNRTRVKVTKNKVAPPFKQAEFDIMYNQGISREGNVLDVGVREELVQKSG 327

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           AWF++K  RLGQGREN+K FL+EN  I   IE+ +R+   L        P +  K  A+K
Sbjct: 328 AWFAYKENRLGQGRENAKQFLKENSSILYEIENKIREKYEL--------PIM--KPSANK 377

Query: 357 DDTDN 361
            +T N
Sbjct: 378 AETKN 382


>gi|296132793|ref|YP_003640040.1| recA protein [Thermincola sp. JR]
 gi|296031371|gb|ADG82139.1| recA protein [Thermincola potens JR]
          Length = 343

 Score =  445 bits (1144), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/327 (64%), Positives = 272/327 (83%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+ ALSQI++ +GKG+IM+LG + S    IEV+ +G+L LD+ALG+GG P+GR+V
Sbjct: 3   DKLKALDMALSQIEKQFGKGSIMKLG-EASAKMNIEVIPTGALALDVALGVGGVPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA++QK GGT AF+DAEHALD  YARKLGVD+ NLL+SQPDTG
Sbjct: 62  EIYGPESSGKTTVALHIIAEAQKLGGTAAFIDAEHALDPYYARKLGVDIDNLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+D+IV+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKLT +I
Sbjct: 122 EQALEIAEALVRSGAIDVIVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S+   +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+++R++ S+K    + G++T
Sbjct: 182 SKSRTTAIFINQIREKVGVMFGNPETTPGGRALKFYASVRMEVRKIESLKQGADVIGSRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ +FDI YGEGIS  G +ID+    +I++KSGAW+S+K +RLGQGR
Sbjct: 242 RVKVVKNKVAPPFKQADFDITYGEGISREGSIIDMATDLNILNKSGAWYSYKDERLGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN K +L+E+ EIA  IE  +R++ GL
Sbjct: 302 ENVKEYLKEHPEIANEIEEKIRESLGL 328


>gi|132227|sp|P18076|RECA_METFL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|95271|pir||JQ0776 recombination protein recA - Methylobacillus sp
 gi|150030|gb|AAA25386.1| RecA protein [Methylobacillus flagellatus]
          Length = 344

 Score =  445 bits (1144), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 220/336 (65%), Positives = 286/336 (85%), Gaps = 1/336 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++SKAL AALSQI++ +GKG+IM++G    +   I+ VS+GSLGLDIALGIGG P+GRIV
Sbjct: 4   NRSKALAAALSQIEKQFGKGSIMRMGDT-DVAADIQAVSTGSLGLDIALGIGGLPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK GGT AF+DAEHALD +YA+KLGV++ +LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLSVIAQMQKLGGTAAFIDAEHALDPVYAQKLGVNVSDLLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VD++V+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 123 EQALEIADMLVRSGSVDVVVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+  +++FINQ+RMKIG+MFG+PETTTGGNALKFY+SVRLDIRR G+IK  D +TG++T
Sbjct: 183 KRTNTLVIFINQIRMKIGLMFGNPETTTGGNALKFYASVRLDIRRTGAIKKGDEVTGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKN +A PFK  EFDI+YGEGIS  GE+I+LGV   +++K+GAW+S+KG+++GQG+
Sbjct: 243 RVKVVKNNVAPPFKLAEFDILYGEGISREGEIIELGVNLKLIEKAGAWYSYKGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           +N++ FLRE+ EIA  I++ +R+++ L   ++   P
Sbjct: 303 DNAREFLREHPEIANEIDAKIREHSNLANAAMTTAP 338


>gi|54025813|ref|YP_120055.1| recombinase A [Nocardia farcinica IFM 10152]
 gi|59798146|sp|Q5YT00|RECA_NOCFA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|54017321|dbj|BAD58691.1| putative RecA protein [Nocardia farcinica IFM 10152]
          Length = 347

 Score =  445 bits (1144), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/337 (62%), Positives = 272/337 (80%), Gaps = 2/337 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE AL+Q+++ +GKGA+M+LG +    + I V+ +GS+ LD+ALGIGG P+GRIV
Sbjct: 7   DRDKALELALAQVEKSFGKGAVMRLGEEAR--QPISVIPTGSIALDVALGIGGLPRGRIV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YARKLGVD   LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYARKLGVDTDALLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+TS++
Sbjct: 125 EQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTSAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+T
Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGSDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+W++++G +LGQG+
Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISKEGSLIDMGVEQGFIRKSGSWYTYEGDQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           EN++ FL EN ++ + IE  +++  G+ AD   ++ A
Sbjct: 305 ENARKFLLENTDVRDEIEKKIKEKLGIGADLTAEDAA 341


>gi|220934461|ref|YP_002513360.1| recA protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|254790455|sp|B8GQV3|RECA_THISH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|219995771|gb|ACL72373.1| recA protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 343

 Score =  445 bits (1144), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 220/323 (68%), Positives = 277/323 (85%), Gaps = 1/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL AAL QI+R +GKGA+M++G   ++ + +E +S+GSL LDIALGIGG PKGR+V
Sbjct: 4   NRKKALSAALGQIERQFGKGAVMRMGDSTAVRD-VEAISTGSLALDIALGIGGLPKGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAECQKQGGTAAFVDAEHALDPGYAEKLGVNVDDLLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGAVD++V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKLT++I
Sbjct: 123 EQALEIADMLVRSGAVDVVVVDSVAALTPKAEIEGEMGDAHVGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK  D + GN+T
Sbjct: 183 KRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKKGDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF+I+YGEGIS  GE+ID+GV+  IVDKSGAW+S+ G+R+GQG+
Sbjct: 243 RVKVVKNKVAPPFKQAEFEILYGEGISRLGEVIDIGVQDGIVDKSGAWYSYNGERIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           +N++ FL+E+ E+A  IE  +R+
Sbjct: 303 DNARTFLKEHPEMAGEIERQIRE 325


>gi|282862279|ref|ZP_06271341.1| recA protein [Streptomyces sp. ACTE]
 gi|282562618|gb|EFB68158.1| recA protein [Streptomyces sp. ACTE]
          Length = 376

 Score =  445 bits (1144), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 210/327 (64%), Positives = 273/327 (83%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+AAL+QI+R +GKGA+M+LG + +  E IEV+ +GS  LD+ALG+GG P+GR+V
Sbjct: 5   DREKALDAALAQIERQFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD  YA+KLGVD+ +L++SQPD G
Sbjct: 63  EVYGPESSGKTTLTLHAVANAQKLGGSVAFIDAEHALDPEYAKKLGVDIDSLILSQPDNG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+TS++
Sbjct: 123 EQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITSAL 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     GN+T
Sbjct: 183 NQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAVGNRT 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +LGQG+
Sbjct: 243 RVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQLGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN++ FL++N ++A  IE  + +  G+
Sbjct: 303 ENARNFLKDNPDLANEIEKKILEKLGV 329


>gi|323705381|ref|ZP_08116956.1| recA protein [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535283|gb|EGB25059.1| recA protein [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 343

 Score =  445 bits (1144), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/330 (63%), Positives = 273/330 (82%), Gaps = 2/330 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           +++K KAL+ A+SQI+R +GKG+IM+LG    +   I+V+S+GS+ LDIALG+GG P+GR
Sbjct: 1   MIEKQKALDMAISQIERQFGKGSIMRLGDNSKL--NIDVISTGSIDLDIALGVGGVPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EI+GPESSGKTT+ALH +A++QK GGT AF+DAEHALD +YA+ +GV + NLL+SQPD
Sbjct: 59  IIEIFGPESSGKTTIALHILAEAQKLGGTGAFIDAEHALDPVYAKNVGVKIDNLLVSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVD+IVIDSVAAL P+AEI+GDMG++  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIVEALVRSGAVDVIVIDSVAALVPKAEIDGDMGDAHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            IS++K + VFINQ+R K+GVMFG+PETT GG ALKFYS++RLD+R+V  IK  + I GN
Sbjct: 179 VISKTKSVAVFINQLREKVGVMFGNPETTPGGRALKFYSTIRLDVRKVDGIKQGNDIVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++DL     I+DKSGAW+S+   RLGQ
Sbjct: 239 RTRVKVVKNKVAPPFKQAEFDIMYGEGISREGSILDLAASIDIIDKSGAWYSYGDIRLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLV 338
           GREN+K +L+EN  IA+ IE+ +R+N  L+
Sbjct: 299 GRENAKQYLKENKAIADEIENKIRENFNLL 328


>gi|296269101|ref|YP_003651733.1| recA protein [Thermobispora bispora DSM 43833]
 gi|296091888|gb|ADG87840.1| recA protein [Thermobispora bispora DSM 43833]
          Length = 365

 Score =  445 bits (1144), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 207/331 (62%), Positives = 273/331 (82%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M + D+ KALE AL+QI+R +GKG++M+LG +      IEV+ +GS+ LD+ALGIGGFP+
Sbjct: 1   MALSDREKALETALAQIERQFGKGSVMRLGDEAR--APIEVIPTGSIALDVALGIGGFPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVE++GPESSGKTT+ALH +A +QK GG  AF+DAEHALD  YARKLGVD+  LL+SQ
Sbjct: 59  GRIVEVFGPESSGKTTVALHAVANAQKAGGIAAFIDAEHALDPEYARKLGVDVDALLVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI DML+RSGA+DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDTGEQALEIADMLIRSGAIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKV 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
             ++S ++   +FINQ+R KIGVMFG+PETTTGG ALKFY+S+RLD+RR+ ++KD     
Sbjct: 179 AGALSHTRTTAIFINQLREKIGVMFGNPETTTGGKALKFYASIRLDVRRIETLKDGTEPI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PF+Q +FDI+YG GIS  G L+D+GV+  IV K+GAW++++G++L
Sbjct: 239 GNRTRVKVVKNKLAPPFRQADFDILYGVGISREGGLLDMGVEQGIVRKAGAWYTYEGEQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FLR N +IA+ IE  +++  G+
Sbjct: 299 GQGKENARNFLRNNPDIADEIEKKIKEKLGI 329


>gi|294815485|ref|ZP_06774128.1| Protein recA [Streptomyces clavuligerus ATCC 27064]
 gi|294328084|gb|EFG09727.1| Protein recA [Streptomyces clavuligerus ATCC 27064]
          Length = 417

 Score =  444 bits (1143), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/333 (62%), Positives = 272/333 (81%), Gaps = 2/333 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           + M   D+ KAL+AAL+QI+R +GKGA+M++G +    E IE++ +GS  LD+ALG+GG 
Sbjct: 42  EPMAGTDREKALDAALAQIERQFGKGAVMRMGDRTQ--EPIEIIPTGSTALDVALGVGGL 99

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GR+VEIYGPESSGKTTL LH +A +Q+ GG  AFVDAEHALD  YARKLGVD+ NL++
Sbjct: 100 PRGRVVEIYGPESSGKTTLTLHAVANAQRAGGQVAFVDAEHALDPEYARKLGVDIDNLIL 159

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALR
Sbjct: 160 SQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 219

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           K+TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD   
Sbjct: 220 KITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTE 279

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
             GN+TR KVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++  
Sbjct: 280 AVGNRTRCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYESG 339

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           +LGQG+EN++ FL++N ++A+ IE  ++   G+
Sbjct: 340 QLGQGKENARNFLKDNPDLADEIEKKIKDKLGV 372


>gi|17545270|ref|NP_518672.1| recombinase A [Ralstonia solanacearum GMI1000]
 gi|20178050|sp|Q8Y1Y6|RECA_RALSO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|17427561|emb|CAD14079.1| probable protein reca (recombinase a) [Ralstonia solanacearum
           GMI1000]
          Length = 352

 Score =  444 bits (1143), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 214/315 (67%), Positives = 272/315 (86%), Gaps = 2/315 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G   +  E ++VVS+GSLGLD+ALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 25  IEKQFGKGSIMKMGD--AEVEPVQVVSTGSLGLDVALGVGGLPRGRVVEIYGPESSGKTT 82

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +A+ QK GGTCAF+DAEHALD  YA KLGV + +LLISQPDTGEQALEI D LVR
Sbjct: 83  LTLQVVAEMQKLGGTCAFIDAEHALDVTYADKLGVKVPDLLISQPDTGEQALEIADALVR 142

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG+VD+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 143 SGSVDLIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 202

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T+VKVVKNK+A P
Sbjct: 203 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGDEVVGNETKVKVVKNKVAPP 262

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YG G+S  GE+IDLGV+A +V+KSGAW+S+ G+R+GQGR+N + FLREN E
Sbjct: 263 FREAIFDILYGAGVSREGEIIDLGVEAKVVEKSGAWYSYNGERIGQGRDNCREFLRENAE 322

Query: 323 IAENIESLLRQNAGL 337
           +A  IE+ +R++ G+
Sbjct: 323 LAREIENKVREHLGV 337


>gi|326776175|ref|ZP_08235440.1| recA protein [Streptomyces cf. griseus XylebKG-1]
 gi|326656508|gb|EGE41354.1| recA protein [Streptomyces cf. griseus XylebKG-1]
          Length = 374

 Score =  444 bits (1143), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 210/327 (64%), Positives = 273/327 (83%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+AAL+QI+R +GKGA+M+LG + +  E IEV+ +GS  LD+ALG+GG P+GR+V
Sbjct: 5   DREKALDAALAQIERQFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD  YA+KLGVD+ +L++SQPD G
Sbjct: 63  EVYGPESSGKTTLTLHAVANAQKLGGSVAFIDAEHALDPEYAKKLGVDIDSLILSQPDNG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+TS++
Sbjct: 123 EQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITSAL 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     GN+T
Sbjct: 183 NQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAVGNRT 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +LGQG+
Sbjct: 243 RVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQLGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN++ FL++N ++A  IE  + +  G+
Sbjct: 303 ENARNFLKDNPDLANEIEKKILEKLGV 329


>gi|182435538|ref|YP_001823257.1| recombinase A [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178464054|dbj|BAG18574.1| putative RecA protein [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 376

 Score =  444 bits (1143), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 210/327 (64%), Positives = 273/327 (83%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+AAL+QI+R +GKGA+M+LG + +  E IEV+ +GS  LD+ALG+GG P+GR+V
Sbjct: 5   DREKALDAALAQIERQFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD  YA+KLGVD+ +L++SQPD G
Sbjct: 63  EVYGPESSGKTTLTLHAVANAQKLGGSVAFIDAEHALDPEYAKKLGVDIDSLILSQPDNG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+TS++
Sbjct: 123 EQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITSAL 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     GN+T
Sbjct: 183 NQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAVGNRT 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +LGQG+
Sbjct: 243 RVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQLGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN++ FL++N ++A  IE  + +  G+
Sbjct: 303 ENARNFLKDNPDLANEIEKKILEKLGV 329


>gi|303253281|ref|ZP_07339430.1| recombinase A [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|307248166|ref|ZP_07530194.1| hypothetical protein appser2_11470 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302647963|gb|EFL78170.1| recombinase A [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|306855343|gb|EFM87518.1| hypothetical protein appser2_11470 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 376

 Score =  444 bits (1143), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/329 (66%), Positives = 272/329 (82%), Gaps = 2/329 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K+++   K KAL AAL+QI++ +GKG+IM+LG   ++   IE VS+GS+GLD ALGIGG 
Sbjct: 15  KQIDPEQKEKALAAALAQIEKQFGKGSIMRLGDTQAL--DIEAVSTGSIGLDAALGIGGL 72

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P GRIVEIYGPESSGKTTL L  IAQ+QK+G TCAF+DAEHALD +YARKLGVD   LLI
Sbjct: 73  PMGRIVEIYGPESSGKTTLTLSVIAQAQKSGKTCAFIDAEHALDPVYARKLGVDTDALLI 132

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALR
Sbjct: 133 SQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALR 192

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT++I  + C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G +KD D 
Sbjct: 193 KLTANIKATNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRSGVVKDGDE 252

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + G++T+VK+VKNK+A PF++V+FDIMYGEGIS   EL+ L      + K+GAWFS++G 
Sbjct: 253 VVGSETKVKIVKNKVAPPFREVQFDIMYGEGISRMNELLILAEANGFIQKAGAWFSYEGT 312

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQ 333
           ++GQG+ N+  +L+EN EIAE IE  +R+
Sbjct: 313 KIGQGKNNAIKWLKENPEIAEKIEQDIRE 341


>gi|126208613|ref|YP_001053838.1| recombinase A [Actinobacillus pleuropneumoniae L20]
 gi|165976570|ref|YP_001652163.1| recombinase A [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|190150471|ref|YP_001968996.1| recombinase A [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|303250107|ref|ZP_07336309.1| recombinase A [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307246058|ref|ZP_07528140.1| hypothetical protein appser1_12610 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307250399|ref|ZP_07532346.1| hypothetical protein appser4_11800 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307252781|ref|ZP_07534672.1| hypothetical protein appser6_12950 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307255040|ref|ZP_07536858.1| hypothetical protein appser9_12740 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259476|ref|ZP_07541201.1| hypothetical protein appser11_12730 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307263815|ref|ZP_07545420.1| hypothetical protein appser13_12250 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|126097405|gb|ABN74233.1| recombinase A [Actinobacillus pleuropneumoniae serovar 5b str. L20]
 gi|165876671|gb|ABY69719.1| RecA protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|189915602|gb|ACE61854.1| recombinase A [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|302651170|gb|EFL81324.1| recombinase A [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306852993|gb|EFM85216.1| hypothetical protein appser1_12610 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306857528|gb|EFM89637.1| hypothetical protein appser4_11800 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306859813|gb|EFM91835.1| hypothetical protein appser6_12950 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306861913|gb|EFM93889.1| hypothetical protein appser9_12740 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866412|gb|EFM98275.1| hypothetical protein appser11_12730 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306870804|gb|EFN02543.1| hypothetical protein appser13_12250 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 376

 Score =  444 bits (1143), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/329 (66%), Positives = 272/329 (82%), Gaps = 2/329 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K+++   K KAL AAL+QI++ +GKG+IM+LG   ++   IE VS+GS+GLD ALGIGG 
Sbjct: 15  KQIDPEQKEKALAAALAQIEKQFGKGSIMRLGDTQAL--DIEAVSTGSIGLDAALGIGGL 72

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P GRIVEIYGPESSGKTTL L  IAQ+QK+G TCAF+DAEHALD +YARKLGVD   LLI
Sbjct: 73  PMGRIVEIYGPESSGKTTLTLSVIAQAQKSGKTCAFIDAEHALDPVYARKLGVDTDALLI 132

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALR
Sbjct: 133 SQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALR 192

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT++I  + C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G +KD D 
Sbjct: 193 KLTANIKATNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRSGVVKDGDE 252

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + G++T+VK+VKNK+A PF++V+FDIMYGEGIS   EL+ L      + K+GAWFS++G 
Sbjct: 253 VVGSETKVKIVKNKVAPPFREVQFDIMYGEGISRMNELLILAEANGFIQKAGAWFSYEGT 312

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQ 333
           ++GQG+ N+  +L+EN EIAE IE  +R+
Sbjct: 313 KIGQGKNNAIKWLKENPEIAEKIEQDIRE 341


>gi|150390420|ref|YP_001320469.1| recA protein [Alkaliphilus metalliredigens QYMF]
 gi|149950282|gb|ABR48810.1| recA protein [Alkaliphilus metalliredigens QYMF]
          Length = 347

 Score =  444 bits (1143), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/339 (62%), Positives = 275/339 (81%), Gaps = 5/339 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           ++K KAL+ A+SQI++ +GKG+IM+LG    +   +E +S+GS+ LD+A+GIGG P+GR+
Sbjct: 1   MEKKKALDVAISQIEKQFGKGSIMKLGEDSKL--SLECISTGSIDLDVAIGIGGVPRGRV 58

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT++LH IA++QK GG+ AF+DAEHALD IYARKLGVD +NL++SQPDT
Sbjct: 59  VEIYGPESSGKTTVSLHIIAEAQKNGGSAAFIDAEHALDPIYARKLGVDTENLIVSQPDT 118

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + LVRSGA+D+IV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ S
Sbjct: 119 GEQALEIAEALVRSGAIDVIVVDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLSGS 178

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I++S    +FINQ+R KIGVMFG+PETTTGG ALKFY+SVRLD+RR+  IK  + I GN+
Sbjct: 179 INKSNTTAIFINQLREKIGVMFGNPETTTGGRALKFYASVRLDVRRIDVIKQGNDIIGNR 238

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQ EFDIMYGEGIS  G+++D+     I+ K+GAW+S+   RLGQG
Sbjct: 239 TRVKVVKNKIAPPFKQAEFDIMYGEGISKTGDVLDVASNLEIIKKAGAWYSYGDHRLGQG 298

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348
           RENSK FL+EN +I   +E+ +R++  L    L+  P +
Sbjct: 299 RENSKQFLKENPDIFLEVENKIREHHNL---PLVSRPVV 334


>gi|119774183|ref|YP_926923.1| recombinase A [Shewanella amazonensis SB2B]
 gi|166220676|sp|A1S4E7|RECA_SHEAM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|119766683|gb|ABL99253.1| recA protein [Shewanella amazonensis SB2B]
          Length = 355

 Score =  444 bits (1143), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/323 (64%), Positives = 264/323 (81%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL A L QI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P GRIV
Sbjct: 6   NKEKALAAVLGQIEKQFGKGSIMKLGEDRSM--DVETISTGSLSLDVALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G  CAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLEVIAAAQREGKVCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAAL P+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALVPKAEIEGEIGDSHVGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PF+Q +F I+YG+GI+  GEL+DLGV   +++KSGAW+S+KG ++GQGR
Sbjct: 244 RVKVVKNKIAAPFRQADFQILYGQGINRTGELVDLGVLHKLIEKSGAWYSYKGDKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  FL EN EIA  IE  LR+
Sbjct: 304 ANATKFLAENTEIAAEIEKTLRE 326


>gi|53729046|ref|ZP_00134135.2| COG0468: RecA/RadA recombinase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
          Length = 376

 Score =  444 bits (1143), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/329 (66%), Positives = 272/329 (82%), Gaps = 2/329 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K+++   K KAL AAL+QI++ +GKG+IM+LG   ++   IE VS+GS+GLD ALGIGG 
Sbjct: 15  KQIDPEQKEKALAAALAQIEKQFGKGSIMRLGDTQAL--DIEAVSTGSIGLDAALGIGGL 72

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P GRIVEIYGPESSGKTTL L  IAQ+QK+G TCAF+DAEHALD +YARKLGVD   LLI
Sbjct: 73  PMGRIVEIYGPESSGKTTLTLSVIAQAQKSGKTCAFIDAEHALDPVYARKLGVDTDALLI 132

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALR
Sbjct: 133 SQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALR 192

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT++I  + C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G +KD D 
Sbjct: 193 KLTANIKATNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRSGVVKDGDE 252

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + G++T+VK+VKNK+A PF++V+FDIMYGEGIS   EL+ L      + K+GAWFS++G 
Sbjct: 253 VVGSETKVKIVKNKVAPPFREVQFDIMYGEGISRMNELLILAEANGFIQKAGAWFSYEGT 312

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQ 333
           ++GQG+ N+  +L+EN EIAE IE  +R+
Sbjct: 313 KIGQGKNNAIKWLKENPEIAEKIEQDIRE 341


>gi|269965242|ref|ZP_06179376.1| recA protein [Vibrio alginolyticus 40B]
 gi|269830228|gb|EEZ84455.1| recA protein [Vibrio alginolyticus 40B]
          Length = 354

 Score =  444 bits (1143), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 205/323 (63%), Positives = 269/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 11  NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 68

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTG
Sbjct: 69  EIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 128

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 129 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 188

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T
Sbjct: 189 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 248

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GEL+DLGVK  +V+K+GAW+S+ G ++GQG+
Sbjct: 249 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKAGAWYSYNGDKIGQGK 308

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +LRE+ E+A+ I++ LR+
Sbjct: 309 ANACNYLREHPEVAKTIDTKLRE 331


>gi|78044103|ref|YP_360011.1| recA protein [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996218|gb|ABB15117.1| recA protein [Carboxydothermus hydrogenoformans Z-2901]
          Length = 343

 Score =  444 bits (1143), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/324 (64%), Positives = 269/324 (83%), Gaps = 1/324 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KALE  +SQI++ +GKG+IM+LG     F+ +EV+ +GSL LD+ALG+GG P+GR+V
Sbjct: 3   DKLKALELTISQIEKQFGKGSIMRLGENTGKFQ-VEVIPTGSLALDLALGVGGVPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTT+ALH IA++QK GG  AF+DAEHALD +YA+KLGVD++NLL+SQPDTG
Sbjct: 62  EIFGPESSGKTTVALHIIAEAQKMGGIAAFIDAEHALDPVYAQKLGVDIENLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+D+IVIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKLT +I
Sbjct: 122 EQALEIAESLVRSGAIDVIVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+SK + +FINQMR K+GVMFG+PETT GG ALKFY+S+R+D+R++  IK  + I G++T
Sbjct: 182 SKSKTVAIFINQMREKVGVMFGNPETTPGGRALKFYASIRMDVRKIDVIKQGNDIIGSRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFKQ +FDIMYGEGIS  G L+D+ V+  IV K G+W+S+  +RLGQGR
Sbjct: 242 RVKIVKNKVAPPFKQADFDIMYGEGISKEGSLLDVAVELKIVQKVGSWYSYNDERLGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQN 334
           EN+K FLR+N EI   IE  +R+ 
Sbjct: 302 ENAKEFLRQNPEIYREIEQKIREQ 325


>gi|37680989|ref|NP_935598.1| recombinase A [Vibrio vulnificus YJ016]
 gi|37199739|dbj|BAC95569.1| RecA recombinase [Vibrio vulnificus YJ016]
          Length = 369

 Score =  444 bits (1143), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 206/332 (62%), Positives = 274/332 (82%), Gaps = 2/332 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           DY + +   +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG 
Sbjct: 15  DYLERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 72

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  
Sbjct: 73  GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDQ 132

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 133 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 192

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 193 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 252

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            D + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +++KSGAW+S+
Sbjct: 253 GDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKCKLIEKSGAWYSY 312

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
            G ++GQG+ N+  +L+EN+++A+ +++ LR+
Sbjct: 313 NGDKIGQGKANACKYLKENVDVAKVLDTKLRE 344


>gi|585798|sp|Q07447|RECA_PSEPU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|294375|gb|AAC36872.1| recA protein [Pseudomonas putida]
 gi|1617593|gb|AAB16921.1| RecA [Pseudomonas putida]
 gi|740001|prf||2004287A recA gene
          Length = 355

 Score =  444 bits (1143), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/322 (64%), Positives = 265/322 (82%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKRALAAALGQIERQFGKGAVMRMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAEAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK++ PF+Q EF I+YG+GI   GE+IDLGV   +V+KSGAW++++G ++GQG+
Sbjct: 242 RVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYAYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N+  +L EN  I   IE  +R
Sbjct: 302 ANAAKYLAENPAIGAEIEKQIR 323


>gi|296803008|gb|ADH51580.1| DNA recombinase [Burkholderia contaminans]
          Length = 285

 Score =  444 bits (1143), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 208/282 (73%), Positives = 251/282 (89%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 3   ENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFID 62

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AE
Sbjct: 63  AEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAE 122

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           IEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNA
Sbjct: 123 IEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNA 182

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+
Sbjct: 183 LKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEI 242

Query: 283 IDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA
Sbjct: 243 IDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIA 284


>gi|229817437|ref|ZP_04447719.1| hypothetical protein BIFANG_02699 [Bifidobacterium angulatum DSM
           20098]
 gi|229785226|gb|EEP21340.1| hypothetical protein BIFANG_02699 [Bifidobacterium angulatum DSM
           20098]
          Length = 395

 Score =  444 bits (1143), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 210/348 (60%), Positives = 274/348 (78%), Gaps = 4/348 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL+Q+++ +GKG+ M+LG +    + +EV+ +GSL LD+ALGIGG PKGRIVE
Sbjct: 18  RKAALDTALAQVEKSFGKGSAMRLGDRPE--QNVEVIPTGSLALDMALGIGGLPKGRIVE 75

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTLALH +A +QK GG  AF+DAEHALD +YARKLGVD  +L++SQPD GE
Sbjct: 76  VYGPESSGKTTLALHVVANAQKAGGVAAFIDAEHALDPVYARKLGVDTDSLIVSQPDNGE 135

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DML+RSGA+D+IVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRK+T +++
Sbjct: 136 QALEIADMLIRSGALDVIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKMTGALA 195

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGV FGSPETTTGG ALKFYSSVRLDIRR+ +IK+ D   GN+TR
Sbjct: 196 QAGTTAIFINQLREKIGVFFGSPETTTGGKALKFYSSVRLDIRRIQTIKNGDEAVGNRTR 255

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNKMA PFK  EFD++YGEGIS  G  +D+ ++  +V KSG+WF+++G +LGQGRE
Sbjct: 256 VKVVKNKMAPPFKSAEFDMLYGEGISREGSALDMAIQVGVVKKSGSWFTYEGDQLGQGRE 315

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLV--ADSLLQEPAINTKDDADKD 357
           N + FL++N  I E IE+ ++   GL+   D   ++ A     +ADK+
Sbjct: 316 NVRNFLKDNPAITEEIENKVKVEFGLIDPMDQFAEDDATKAAAEADKN 363


>gi|110639419|ref|YP_679628.1| recombinase A [Cytophaga hutchinsonii ATCC 33406]
 gi|122966573|sp|Q11QM8|RECA_CYTH3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|110282100|gb|ABG60286.1| DNA recombination protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 355

 Score =  444 bits (1143), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 212/328 (64%), Positives = 268/328 (81%), Gaps = 3/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+  + ++++ YGKG +M+L  +  +   + V+S+GSLGLDIALGIGG PKGRIV
Sbjct: 13  EKLKALQLTIDKLEKTYGKGTVMKLSDE--VVMDVPVISTGSLGLDIALGIGGLPKGRIV 70

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL++H IA++QK GG  AF+DAEHA D  YA KLG+D  NLLISQPD G
Sbjct: 71  EIYGPESSGKTTLSMHCIAEAQKAGGIAAFIDAEHAFDKTYAEKLGIDTTNLLISQPDNG 130

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L+RSGA+DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT +I
Sbjct: 131 EQALEIAEHLIRSGAIDIIVIDSVAALVPKAEIEGEMGDSKMGLQARLMSQALRKLTGAI 190

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK-DSITGNQ 249
           +++ C  +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR+G IK+  D+ITGN+
Sbjct: 191 NKTGCCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGQIKESADNITGNR 250

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           T+VKVVKNKMA PFK +EFDIMYGEGIS  GE+IDLGV+  I++K+G+WFS++G +LGQG
Sbjct: 251 TKVKVVKNKMAPPFKVIEFDIMYGEGISKIGEIIDLGVELGIINKAGSWFSYEGTKLGQG 310

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           R+  +    +N E+ + IE  +RQ   L
Sbjct: 311 RDAVRTVFLDNPEMQDEIELKIRQKVQL 338


>gi|326443836|ref|ZP_08218570.1| recombinase A [Streptomyces clavuligerus ATCC 27064]
          Length = 374

 Score =  444 bits (1142), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/331 (63%), Positives = 271/331 (81%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G +    E IE++ +GS  LD+ALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRMGDRTQ--EPIEIIPTGSTALDVALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTTL LH +A +Q+ GG  AFVDAEHALD  YARKLGVD+ NL++SQ
Sbjct: 59  GRVVEIYGPESSGKTTLTLHAVANAQRAGGQVAFVDAEHALDPEYARKLGVDIDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTEAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR KVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++  +L
Sbjct: 239 GNRTRCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYESGQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FL++N ++A+ IE  ++   G+
Sbjct: 299 GQGKENARNFLKDNPDLADEIEKKIKDKLGV 329


>gi|282863914|ref|ZP_06272971.1| recA protein [Streptomyces sp. ACTE]
 gi|282560992|gb|EFB66537.1| recA protein [Streptomyces sp. ACTE]
          Length = 356

 Score =  444 bits (1142), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 210/331 (63%), Positives = 271/331 (81%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D  KAL+ AL+QI+R +GKGA+M+LG + +  E IEV+ +GS  LD+ALG+GG P+
Sbjct: 1   MAGTDHEKALDTALAQIERKFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE+YGPESSGKTTL LH +A +QK GG+ AFVDAEHALD  YA+KLGVD  NL++SQ
Sbjct: 59  GRVVEVYGPESSGKTTLTLHAVANAQKAGGSVAFVDAEHALDPEYAKKLGVDTDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI D+L+RSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDILIRSGAIDLIVIDSVAALVPRAEIEGEMGDSHMGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++S+++   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     
Sbjct: 179 TSALSQTRTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGIDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FL++N ++A  IE  + Q  G+
Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKILQKLGI 329


>gi|34497062|ref|NP_901277.1| recombinase A [Chromobacterium violaceum ATCC 12472]
 gi|60393012|sp|Q7NXL9|RECA_CHRVO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|34102919|gb|AAQ59283.1| RecA protein [Chromobacterium violaceum ATCC 12472]
          Length = 350

 Score =  444 bits (1142), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 212/327 (64%), Positives = 278/327 (85%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKSKAL AAL+QI++ +GKG+IM++ S   I E ++V+S+GSL LD+ALG+GG P+GR+V
Sbjct: 5   DKSKALAAALAQIEKQFGKGSIMRM-SDNQITENLQVISTGSLTLDLALGVGGLPRGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  +A++QK GGTCA++DAE+ALD +YA+KLGV++++LLISQPDTG
Sbjct: 64  EIYGPESSGKTTLCLQAVAEAQKLGGTCAYIDAENALDPVYAQKLGVNVEDLLISQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS  VD+IV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT +I
Sbjct: 124 EQALEICDMLVRSSGVDVIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G IK  D + GN T
Sbjct: 184 KRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGGIKKGDEVIGNDT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF+Q +F+I+YGEGIS  GE+I+LGVK   +DKSGAW+++ GQ++GQG+
Sbjct: 244 RVKVVKNKVSPPFRQADFEILYGEGISRQGEIIELGVKHGFIDKSGAWYAYNGQKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           +N++ +L+ N  IA+ IE  +R+  G+
Sbjct: 304 DNTREWLKANPAIADEIERKIREAVGV 330


>gi|123441181|ref|YP_001005168.1| recombinase A [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|332160304|ref|YP_004296881.1| recombinase A [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|166220692|sp|A1JK01|RECA_YERE8 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|122088142|emb|CAL10930.1| RecA protein [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|318604465|emb|CBY25963.1| RecA protein [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325664534|gb|ADZ41178.1| recombinase A [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330863732|emb|CBX73832.1| protein recA [Yersinia enterocolitica W22703]
          Length = 354

 Score =  444 bits (1142), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 206/323 (63%), Positives = 267/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDVVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN  +A  ++  LR+
Sbjct: 304 ANASNYLKENPAVAAELDKKLRE 326


>gi|88607421|ref|YP_505854.1| recombinase A [Anaplasma phagocytophilum HZ]
 gi|88598484|gb|ABD43954.1| recA protein [Anaplasma phagocytophilum HZ]
          Length = 354

 Score =  444 bits (1142), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 201/322 (62%), Positives = 273/322 (84%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK +A++AA+ QI+R +G+G+IM+L  Q S  E +E VS+GS+ LD ALG+GG P+GRI+
Sbjct: 7   DKQRAVDAAIGQIERAFGRGSIMRL--QNSPVEAVECVSTGSIALDAALGVGGLPRGRII 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTLALH IA++QK GG CAF+DAEHALD++YARKLGV + +L++SQPDTG
Sbjct: 65  EIFGPESSGKTTLALHVIAEAQKNGGACAFIDAEHALDTLYARKLGVSVGDLIVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL I + LV SGAVD+IV+DSVAALTPRAEIEGDMG+   G+QARL+S ALRKLTS +
Sbjct: 125 EQALHIVEHLVNSGAVDVIVVDSVAALTPRAEIEGDMGDQHMGLQARLLSHALRKLTSIV 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++ C+LVFINQ+RMKIGV++G+PE TTGG+ALKFY+S+RLDIR+V ++K+K+++TG+  
Sbjct: 185 SKANCLLVFINQIRMKIGVVYGNPEVTTGGSALKFYTSIRLDIRKVSALKEKENVTGHLA 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDIMY EGIS  GE++D+GV+   ++K+G+++S +G +LGQGR
Sbjct: 245 RVKVVKNKVAPPFKQAEFDIMYSEGISKVGEILDMGVRFGFIEKAGSYYSHEGIKLGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           E ++ +L+ N +++  +E L+R
Sbjct: 305 ETARSYLKNNADLSHKLEGLIR 326


>gi|260588139|ref|ZP_05854052.1| protein RecA [Blautia hansenii DSM 20583]
 gi|331082295|ref|ZP_08331421.1| recA [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260541666|gb|EEX22235.1| protein RecA [Blautia hansenii DSM 20583]
 gi|330400781|gb|EGG80382.1| recA [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 358

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/330 (62%), Positives = 269/330 (81%), Gaps = 1/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+ AL+QI++ +GKG+IM+LG   +    +E V +G+L LDIALG+GG PKGRI+
Sbjct: 8   DKLKALDGALAQIEKQFGKGSIMKLGDSTANMN-VETVPTGALSLDIALGLGGVPKGRII 66

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A+ QK GG   F+DAEHALD  YA+ +GVD+ NL ISQPD G
Sbjct: 67  EVYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPAYAKNIGVDIDNLYISQPDNG 126

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ +VRSGAVDII++DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT+ I
Sbjct: 127 EQALEITETMVRSGAVDIIIVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTAHI 186

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S CI++FINQ+R K+GVMFG+PE TTGG ALKFYSS+R+D+RR+ ++K    + GN+T
Sbjct: 187 SKSNCIVIFINQLREKVGVMFGNPEVTTGGRALKFYSSIRMDVRRIETLKQGGEMVGNRT 246

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PFK+ EFDIM+GEGIS  G+++DL     IV+KSGAW+++   ++GQGR
Sbjct: 247 RIKVVKNKIAPPFKEAEFDIMFGEGISKEGDILDLAANIGIVNKSGAWYAYNDGKIGQGR 306

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           EN+K +L+EN EIAE IE  +R + GL+ D
Sbjct: 307 ENAKKYLKENPEIAEEIEQKVRVHYGLLPD 336


>gi|97537035|sp|Q07809|RECA_PSEST RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|50250477|emb|CAH03858.1| RecA protein [Pseudomonas stutzeri]
          Length = 347

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 212/345 (61%), Positives = 272/345 (78%), Gaps = 2/345 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI++ +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKRALAAALGQIEKQFGKGAVMRMGDHDR--QAIPSISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAAAQRMGSTCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+Y +     GE+IDLGV+  +V+KSGAW+++KG ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYDQAFYRNGEIIDLGVQQGLVEKSGAWYAYKGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            N+  +L EN EI + IE  +R    + + +    P      DAD
Sbjct: 302 ANAAKYLEENPEIGQEIEQQIRAKLLVTSANTKATPVAEDLADAD 346


>gi|258623517|ref|ZP_05718518.1| recA protein [Vibrio mimicus VM573]
 gi|258623801|ref|ZP_05718758.1| recA protein [Vibrio mimicus VM603]
 gi|258583924|gb|EEW08716.1| recA protein [Vibrio mimicus VM603]
 gi|258584179|gb|EEW08927.1| recA protein [Vibrio mimicus VM573]
          Length = 406

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/332 (62%), Positives = 272/332 (81%), Gaps = 2/332 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           DY + +   +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG 
Sbjct: 47  DYPERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 104

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  
Sbjct: 105 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 164

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 165 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 224

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 225 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 284

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+
Sbjct: 285 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSY 344

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
            G ++GQG+ N+  +L+EN EIA+ ++  LR+
Sbjct: 345 NGDKIGQGKANACKYLKENTEIAKTLDKKLRE 376


>gi|319953059|ref|YP_004164326.1| protein reca [Cellulophaga algicola DSM 14237]
 gi|319421719|gb|ADV48828.1| Protein recA [Cellulophaga algicola DSM 14237]
          Length = 352

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 210/323 (65%), Positives = 266/323 (82%), Gaps = 3/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+  L ++ + YGKGA+M++G   S+ + +EV+ SGSLGLD+ALG+GG+P+GR++E
Sbjct: 25  KLKALKLTLDKLDKTYGKGAVMKMGD--SVAQDVEVIPSGSLGLDVALGVGGYPRGRVIE 82

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA++QK GG  AF+DAEHA D  YA KLGVD+ NL+ISQPD GE
Sbjct: 83  IYGPESSGKTTLTLHAIAEAQKNGGIAAFIDAEHAFDRFYAAKLGVDIDNLIISQPDNGE 142

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q LEI D L+RSGA+DI+VIDSVAALTP++EIEG+MG+S  G+ ARLMSQALRKLT SIS
Sbjct: 143 QGLEIADNLIRSGAIDIVVIDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTGSIS 202

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQT 250
           ++KC ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IKD D ++ GN+T
Sbjct: 203 KTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKDTDGNVQGNKT 262

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EFDIMYGEGIS  GE+IDLGV+  I+ KSG+WFS+   +LGQGR
Sbjct: 263 RVKVVKNKVAPPFRQTEFDIMYGEGISKVGEVIDLGVEYEIIKKSGSWFSYGDTKLGQGR 322

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           +  K  L +N E+ E +++ +R+
Sbjct: 323 DAVKNLLLDNPELQEELDAKIRE 345


>gi|322421556|ref|YP_004200779.1| recA protein [Geobacter sp. M18]
 gi|320127943|gb|ADW15503.1| recA protein [Geobacter sp. M18]
          Length = 338

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/318 (65%), Positives = 273/318 (85%), Gaps = 1/318 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL+ ALSQI++ +GKGAIM+LG++ ++ + +  + +GSL LD+ALG+GG P+GR++EI+
Sbjct: 9   KALDLALSQIEKQFGKGAIMRLGNEEALPD-VAAIPTGSLSLDLALGVGGVPRGRVIEIF 67

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTLALH I+++QK GG  AFVDAEHALD  YARKLGV   +LL+SQPDTGEQA
Sbjct: 68  GPESSGKTTLALHVISEAQKLGGIAAFVDAEHALDIGYARKLGVKTDDLLVSQPDTGEQA 127

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI + LVRSGA+D++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  IS+S
Sbjct: 128 LEIAETLVRSGAIDVLVVDSVAALVPKAEIEGDMGDSHMGLQARLMSQALRKLTGIISKS 187

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            C ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIR++ ++K  + + G++TRVK
Sbjct: 188 NCCVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRKIAALKQGNDMIGSRTRVK 247

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VVKNK+A PFK+VEFDI+YGEGIS  G+++DL V+ ++V+KSGAWFS+  +R+GQGRENS
Sbjct: 248 VVKNKVAPPFKEVEFDILYGEGISKEGDVLDLAVERNVVEKSGAWFSYGKERIGQGRENS 307

Query: 314 KIFLRENIEIAENIESLL 331
           ++FL+E+ EI E I + L
Sbjct: 308 RLFLKEHPEITEEIRAKL 325


>gi|15614946|ref|NP_243249.1| recombinase A [Bacillus halodurans C-125]
 gi|11387031|sp|Q9KAA7|RECA_BACHD RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|10175003|dbj|BAB06102.1| multifunctional protein involved in homologous recombination
           [Bacillus halodurans C-125]
          Length = 349

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/337 (61%), Positives = 274/337 (81%), Gaps = 2/337 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG Q    + +  +SSG+L LDIALG+GG+P+GR++
Sbjct: 3   DRKAALDMALRQIEKQFGKGSIMKLGEQAE--QRVSTISSGALALDIALGVGGYPRGRVI 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ Q+ GG  AF+DAEHALD +YA+KLGV++  LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVALHAIAEVQRNGGQAAFIDAEHALDPVYAKKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQALEIAEALVRSGAIDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR  ++K  + + GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMVGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFKQ E DIMYGEGIS  G ++D+  +  IV KSGAW+SF  +RLGQGR
Sbjct: 241 KIKVVKNKVAPPFKQAEVDIMYGEGISREGSILDIASELDIVQKSGAWYSFNDERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           EN+K FL+EN E AE IES +R++ GL  +  ++ P+
Sbjct: 301 ENAKQFLKENPEAAEEIESRIREHYGLNGEIEVEAPS 337


>gi|307257197|ref|ZP_07538969.1| hypothetical protein appser10_11970 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864359|gb|EFM96270.1| hypothetical protein appser10_11970 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 376

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/329 (66%), Positives = 272/329 (82%), Gaps = 2/329 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K+++   K KAL AAL+QI++ +GKG+IM+LG   ++   IE VS+GS+GLD ALGIGG 
Sbjct: 15  KQIDPEQKEKALAAALAQIEKQFGKGSIMRLGDTQAL--DIEAVSTGSIGLDAALGIGGL 72

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P GRIVEIYGPESSGKTTL L  IAQ+QK+G TCAF+DAEHALD +YARKLGVD   LLI
Sbjct: 73  PMGRIVEIYGPESSGKTTLTLSVIAQAQKSGKTCAFIDAEHALDPVYARKLGVDTDALLI 132

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALR
Sbjct: 133 SQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALR 192

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT++I  + C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G +KD D 
Sbjct: 193 KLTANIKATNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRSGVVKDGDE 252

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + G++T+VK+VKNK+A PF++V+FDIMYGEGIS   EL+ L      + K+GAWFS++G 
Sbjct: 253 VVGSETKVKIVKNKVAPPFREVQFDIMYGEGISRMNELLILAEANGFIQKAGAWFSYEGT 312

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQ 333
           ++GQG+ N+  +L+EN EIAE IE  +R+
Sbjct: 313 KIGQGKNNAIKWLKENPEIAEKIEQDIRE 341


>gi|296185335|ref|ZP_06853745.1| protein RecA [Clostridium carboxidivorans P7]
 gi|296050169|gb|EFG89593.1| protein RecA [Clostridium carboxidivorans P7]
          Length = 358

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/349 (62%), Positives = 282/349 (80%), Gaps = 6/349 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALEAAL QI++ +GKG+IM+LG   ++   IE +S+G L LDIALGIGG P+GR+V
Sbjct: 7   EKLKALEAALGQIEKQFGKGSIMKLGEHSTL--DIEAISTGCLDLDIALGIGGVPRGRVV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A++QK  G  AF+DAEHALD +YAR LGVD++NL++SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHIVAEAQKAAGAAAFIDAEHALDPVYARALGVDIENLIVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVD+IV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT +I
Sbjct: 125 EQALEIAEALVRSGAVDVIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGAI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SKC+++FINQ+R K+GVMFG+PETT GG ALKFY+SVR+DIRR+ SIK  DSI GN+T
Sbjct: 185 NKSKCVIIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDIRRIDSIKQGDSIVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV KNK+A PFKQ EFDIMY +GIS  G ++D+GV+  +V KSGAWF++K  RLGQGR
Sbjct: 245 RVKVTKNKVAPPFKQAEFDIMYNQGISREGNVLDVGVREELVQKSGAWFAYKENRLGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           EN+K FL+EN  I   IE+ +R+   L     + +P+ N  +  +++ +
Sbjct: 305 ENAKQFLKENSSILYEIENKIREKYELP----IMKPSANKAETKNENKS 349


>gi|239628382|ref|ZP_04671413.1| recA protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518528|gb|EEQ58394.1| recA protein [Clostridiales bacterium 1_7_47FAA]
          Length = 389

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 204/328 (62%), Positives = 272/328 (82%), Gaps = 1/328 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           ++MN  +K KAL+AAL+QI++ YGKG++M+LG   +    IE V +GS+ LDIALG+GG 
Sbjct: 12  RDMNKDEKLKALDAALTQIEKAYGKGSVMKLGDSRANMN-IETVPTGSISLDIALGLGGV 70

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+E+YGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YA+ +GVD+ NL I
Sbjct: 71  PKGRIIEVYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYI 130

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+G+MG+S  G+QARLMSQALR
Sbjct: 131 SQPDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGEMGDSHVGLQARLMSQALR 190

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT+ IS+S CI++FINQ+R K+GVMFG+PETTTGG ALKFY+SVRLD+RR+ ++K    
Sbjct: 191 KLTAVISKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYASVRLDVRRIETLKQGGE 250

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + GN+ RVKVVKNK+A PFK+ EFDIM+G+GIS  G+++DL VK +I++KSGAWF++ G 
Sbjct: 251 VIGNRVRVKVVKNKIAPPFKEAEFDIMFGKGISKVGDILDLAVKENIIEKSGAWFAYNGS 310

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLR 332
           ++GQGRENSK +L +N E+   +E+ +R
Sbjct: 311 KIGQGRENSKQYLSDNPEMCAEVEAKVR 338


>gi|91227831|ref|ZP_01262004.1| recombinase A [Vibrio alginolyticus 12G01]
 gi|91188341|gb|EAS74637.1| recombinase A [Vibrio alginolyticus 12G01]
          Length = 347

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 205/323 (63%), Positives = 269/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GEL+DLGVK  +V+K+GAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKAGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +LRE+ E+A+ I++ LR+
Sbjct: 302 ANACNYLREHPEVAKTIDTKLRE 324


>gi|262393292|ref|YP_003285146.1| RecA protein [Vibrio sp. Ex25]
 gi|262336886|gb|ACY50681.1| RecA protein [Vibrio sp. Ex25]
          Length = 347

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 204/323 (63%), Positives = 270/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GEL+DLGVK  +V+K+GAW+S++G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKAGAWYSYQGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +LRE+ E+A+ I++ LR+
Sbjct: 302 ANACNYLREHPEVAKTIDTKLRE 324


>gi|157326931|gb|ABV44578.1| RecA [Burkholderia multivorans]
          Length = 293

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/293 (71%), Positives = 258/293 (88%), Gaps = 1/293 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LV
Sbjct: 60  TLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FIN
Sbjct: 120 RSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ 
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+ + G+++GQGR+N++
Sbjct: 240 PFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYGYNGEKIGQGRDNAR 292


>gi|127512147|ref|YP_001093344.1| recombinase A [Shewanella loihica PV-4]
 gi|166220679|sp|A3QC87|RECA_SHELP RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|126637442|gb|ABO23085.1| recA protein [Shewanella loihica PV-4]
          Length = 353

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 210/322 (65%), Positives = 264/322 (81%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL A L QI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P GRIV
Sbjct: 6   NKEKALSAVLGQIEKQFGKGSIMKLGENRSM--DVETISTGSLSLDVALGAGGLPLGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G  CAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLEVIAAAQREGKVCAFIDAEHALDPIYAQKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD++ + GN+T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDREEVIGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGV   +++KSGAW+S+KG ++GQGR
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINRTGELVDLGVMHKLIEKSGAWYSYKGDKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N+  +L EN EI   I+  LR
Sbjct: 304 ANAGKYLVENPEIGAEIDQALR 325


>gi|28210974|ref|NP_781918.1| recombinase A [Clostridium tetani E88]
 gi|37537945|sp|Q895I5|RECA_CLOTE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|28203413|gb|AAO35855.1| recA protein [Clostridium tetani E88]
          Length = 350

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 211/327 (64%), Positives = 265/327 (81%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KA+EAA+  I++ +GKG++M+LG +  +   IE +S+G LG+DIALGIGG PKGRIV
Sbjct: 4   EKLKAIEAAMGNIEKQFGKGSVMKLGEKNIL--DIEAISTGCLGMDIALGIGGVPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA++QK GG  AF+DAEHALD  YARKLGVD+ NL++SQPDTG
Sbjct: 62  EIYGPESSGKTTVALHIIAEAQKNGGVAAFIDAEHALDPSYARKLGVDIDNLIVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI + LVRS A+DI+V+DSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL  SI
Sbjct: 122 EQGLEIAEALVRSNAIDIVVVDSVAALVPKAEIQGEMGDSHVGLQARLMSQALRKLAGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++S C+ +FINQ+R K+G+MFGSPETT GG ALKFYSSVRLD+RR+ +IK  D   GN+T
Sbjct: 182 NKSNCVAIFINQLREKVGIMFGSPETTPGGRALKFYSSVRLDVRRIDTIKQGDEFLGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV KNK+A PFK  EFDIMY EGIS  G+++DLGVK  IV KSG+WFS+   RLGQGR
Sbjct: 242 RVKVTKNKVAPPFKNAEFDIMYNEGISRTGDVLDLGVKEEIVQKSGSWFSYNDVRLGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K FL++N E+   IE+ +R+   L
Sbjct: 302 ENAKQFLKDNPELLYEIENTIREKYDL 328


>gi|293392772|ref|ZP_06637090.1| recombination protein A [Serratia odorifera DSM 4582]
 gi|291424631|gb|EFE97842.1| recombination protein A [Serratia odorifera DSM 4582]
          Length = 353

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/314 (65%), Positives = 263/314 (83%), Gaps = 2/314 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+  GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQIMYGEGINSRGELVDLGVKHKMIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIA 324
            N+  FL+EN  +A
Sbjct: 304 ANACNFLKENPAVA 317


>gi|288924592|ref|ZP_06418529.1| protein RecA [Prevotella buccae D17]
 gi|288338379|gb|EFC76728.1| protein RecA [Prevotella buccae D17]
          Length = 349

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 206/322 (63%), Positives = 267/322 (82%), Gaps = 2/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+AA+++I++ +GKG+IM++G +    E +EV+ +GS+ LD+ALG+GG+P+GRI+E
Sbjct: 23  KLKALQAAMAKIEKDFGKGSIMRMGDEQ--IENVEVIHTGSIALDVALGVGGYPRGRIIE 80

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD GE
Sbjct: 81  IYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDNGE 140

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RS A+DI+VIDSVAALTP+ EIEGDMG+S  G+QARLMSQALRKLTS+IS
Sbjct: 141 QALEIADQLIRSSAIDILVIDSVAALTPKKEIEGDMGDSAVGLQARLMSQALRKLTSTIS 200

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR+  SIKD D I GNQ R
Sbjct: 201 KTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRKTTSIKDGDQIIGNQVR 260

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV+KNK+A PF++ EF+I +GEGIS  GE++DLGV+  IV KSG+WFS+ G +LGQGR+
Sbjct: 261 VKVIKNKVAPPFRKAEFEITFGEGISKVGEILDLGVEYDIVKKSGSWFSYNGSKLGQGRD 320

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
            +K  L++N E+ E +E+ +++
Sbjct: 321 ATKNLLKDNPELCEELEAKIKE 342


>gi|302345309|ref|YP_003813662.1| protein RecA [Prevotella melaninogenica ATCC 25845]
 gi|302149606|gb|ADK95868.1| protein RecA [Prevotella melaninogenica ATCC 25845]
          Length = 341

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 205/321 (63%), Positives = 266/321 (82%), Gaps = 2/321 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+AA+S+I++ +GKG+IM++G +    E +EV+ +GS+ LD ALG+GG+P+GRI+E
Sbjct: 15  KLKALQAAMSKIEKDFGKGSIMRMGDEQ--IEQVEVIPTGSVALDTALGVGGYPRGRIIE 72

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL +SQPD GE
Sbjct: 73  IYGPESSGKTTLAIHAIAEAQKQGGIAAFIDAEHAFDRFYAEKLGVDVDNLWVSQPDNGE 132

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RS A+DI+V+DSVAALTP+ EIEGDMG+S  G+QARLMSQALRKLTS+I+
Sbjct: 133 QALEIADQLIRSSAIDILVVDSVAALTPKKEIEGDMGDSAVGLQARLMSQALRKLTSTIA 192

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGVMFG+PETTTGGNALKFYSSVRLDIRRV SIKD D + GNQ R
Sbjct: 193 KTNTCCIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRVTSIKDGDQVIGNQVR 252

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNK+A PF++ EF+I +GEGIS  GE++DLGV+  I+ KSG+WFS+ G +L QGR+
Sbjct: 253 VKIVKNKVAPPFRKAEFEITFGEGISKIGEIVDLGVQYGIIQKSGSWFSYNGTKLAQGRD 312

Query: 312 NSKIFLRENIEIAENIESLLR 332
            +K  +++N E+AE +E L++
Sbjct: 313 ATKTMIKDNPELAEELEGLIK 333


>gi|320008171|gb|ADW03021.1| recA protein [Streptomyces flavogriseus ATCC 33331]
          Length = 376

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 210/331 (63%), Positives = 274/331 (82%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M+LG + +  E IEV+ +GS  LD+ALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE+YGPESSGKTTL LH +A +Q+ GG+ AF+DAEHALD  YA+KLGVD+ +L++SQ
Sbjct: 59  GRVVEVYGPESSGKTTLTLHAVANAQRLGGSVAFIDAEHALDPEYAKKLGVDIDSLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FL++N ++A  IE  + +  G+
Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKILEKLGV 329


>gi|255033821|ref|YP_003084442.1| recA protein [Dyadobacter fermentans DSM 18053]
 gi|254946577|gb|ACT91277.1| recA protein [Dyadobacter fermentans DSM 18053]
          Length = 355

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 219/344 (63%), Positives = 271/344 (78%), Gaps = 3/344 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+  L ++ + YGKG +M+L S   + + I V+S+GSLGLD+ALG+GG P+GRIV
Sbjct: 10  NKLKALQTTLEKLDKTYGKGTVMRL-SDTKVLD-IPVISTGSLGLDLALGVGGVPRGRIV 67

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL++H IA++QK GG  AF+DAEHA D  YA KLG+D  NLLISQPD+G
Sbjct: 68  EIYGPESSGKTTLSMHCIAEAQKKGGLAAFIDAEHAFDRTYAEKLGIDTSNLLISQPDSG 127

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L+ SGAVDIIVIDSVAAL PRAE+EG+MGES  G+QARLMSQALRKLT  I
Sbjct: 128 EQALEIAEHLISSGAVDIIVIDSVAALVPRAELEGEMGESKMGLQARLMSQALRKLTGVI 187

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK-DSITGNQ 249
           +++ C  +FINQ+R KIGVMFG+PETTTGGNALK+Y+SVRLDIRRVG IK+  D+I GN+
Sbjct: 188 NKTGCCCIFINQLREKIGVMFGNPETTTGGNALKYYASVRLDIRRVGQIKESADAILGNR 247

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFK VEFDIMYGEG+S  GE+IDL V+  IV KSG+WFS++G RLGQG
Sbjct: 248 TRVKVVKNKVAPPFKVVEFDIMYGEGVSKVGEIIDLAVELEIVKKSGSWFSYEGNRLGQG 307

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           R+  K  +++N E+ E +E  +R       DSL+     N  DD
Sbjct: 308 RDAVKALIKDNPELMEELEGKIRGLVNNDPDSLIDTSEPNVADD 351


>gi|308237901|emb|CBK52097.1| RecA protein [Acidithiobacillus ferrooxidans]
          Length = 283

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/282 (73%), Positives = 248/282 (87%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           V S+GSLGLD+ALG+GG P+GR+VEIYGPESSGKTTL LH IA  Q  GGT AF+DAEHA
Sbjct: 1   VYSTGSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLTLHAIASCQAAGGTAAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YA KLGVDL+NLLISQPDTGEQALEI DMLVRSGAVD+IVIDSVAALTP+AEIEGD
Sbjct: 61  LDPGYAHKLGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGD 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+S  G+QARLMSQALRKLT++ISR+  +++FINQ+RMKIGVM+GSPETTTGGNALKFY
Sbjct: 121 MGDSHVGLQARLMSQALRKLTANISRTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFY 180

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
           +SVRLDIRR+G+IK  D + GN TRVKVVKNK+A PF++ EF I YGEGIS   EL+DLG
Sbjct: 181 ASVRLDIRRIGAIKKSDEVVGNDTRVKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLG 240

Query: 287 VKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           VK  IV+KSGAW+S++G+R+GQG++N++ +L+E+ E+A NIE
Sbjct: 241 VKFDIVEKSGAWYSYQGERIGQGKDNARQYLKEHPELAANIE 282


>gi|260907234|ref|ZP_05915556.1| recA protein [Brevibacterium linens BL2]
          Length = 370

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/350 (62%), Positives = 274/350 (78%), Gaps = 9/350 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKSKAL+AAL QI R YGKGAIM+LG    + E I  + +GS+ LDIALGIGG P+GR+V
Sbjct: 15  DKSKALDAALGQIDRNYGKGAIMRLGE--GVREPIACIPTGSIALDIALGIGGLPRGRVV 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +QKTGG  AF+DAEHALD  YA+KLGVD   LL+SQPDTG
Sbjct: 73  EIYGPESSGKTTVALHAVANAQKTGGIAAFIDAEHALDPEYAKKLGVDTDQLLVSQPDTG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+  ++
Sbjct: 133 EQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKIAGAL 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+SK   +FINQ+R K+GV FGSPETT+GG ALKFY+SVR+D+RR+ ++K+     GN+T
Sbjct: 193 SQSKTTAIFINQLREKVGVFFGSPETTSGGKALKFYASVRIDVRRIETLKEGQDAVGNRT 252

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R K+VKNK+A PFKQ EFDI+YG+GIS  G LID+GV   I+ KSG+WF++ G +LGQG+
Sbjct: 253 RAKIVKNKIAPPFKQAEFDIIYGQGISREGSLIDMGVDNGIIRKSGSWFTYDGDQLGQGK 312

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           EN + FLR+N  +AE IE  ++   GL+    + EP    + DAD +  D
Sbjct: 313 ENVRNFLRDNPGLAEEIELKIKHKMGLIK---VDEP----EADADANQAD 355


>gi|269795614|ref|YP_003315069.1| protein RecA [Sanguibacter keddieii DSM 10542]
 gi|269097799|gb|ACZ22235.1| protein RecA [Sanguibacter keddieii DSM 10542]
          Length = 359

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 212/329 (64%), Positives = 267/329 (81%), Gaps = 2/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALEAAL+QI R +GKG+IM+LG  G     +EV+ +GS+ LDIALGIGG P+GR+V
Sbjct: 6   DREKALEAALAQIDRNFGKGSIMRLGEDGR--APVEVIPTGSIALDIALGIGGLPRGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA+KLGVD   LL+SQPDTG
Sbjct: 64  EVYGPESSGKTTVALHAVASAQRNGGIAAFIDAEHALDPDYAKKLGVDTDALLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGAIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++K+     GN+T
Sbjct: 184 SSSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDIRRIETLKEGTEPVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFKQ EFDI+YG GIS  G LID+GV+   V KSG+WF++ G +LGQG+
Sbjct: 244 RVKVVKNKMAPPFKQAEFDILYGHGISREGGLIDMGVEHGFVRKSGSWFTYDGDQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           EN++ FL++N ++A  +E  +++  G+ A
Sbjct: 304 ENARTFLKDNPDLANELEKRIKEKLGVGA 332


>gi|164688502|ref|ZP_02212530.1| hypothetical protein CLOBAR_02147 [Clostridium bartlettii DSM
           16795]
 gi|164602915|gb|EDQ96380.1| hypothetical protein CLOBAR_02147 [Clostridium bartlettii DSM
           16795]
          Length = 355

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/323 (64%), Positives = 267/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K  AL   L +I++ +GKG+IM+LG   S+   ++ +S+GS+GLDIA+GIGG P+GRIV
Sbjct: 6   EKLDALNHVLGKIEKDFGKGSIMRLGEASSMV--VDSISTGSIGLDIAVGIGGLPRGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH++A++QK GG  AF+DAEHALD +YAR LGVD+ NL+ISQPDTG
Sbjct: 64  EIYGPESSGKTTVALHSVAEAQKNGGIAAFIDAEHALDPVYARALGVDVDNLIISQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ L+RSGA+DIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT SI
Sbjct: 124 EQALEITEALIRSGAIDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGSI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+R K+G+MFG+PETTTGG ALKFYSSVRLD+R++ +IK  D I G++T
Sbjct: 184 KKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKILGSRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDIMYGEGIS  G+L+D+     IV KSG+W++++  +LGQGR
Sbjct: 244 RVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAANVDIVKKSGSWYNYQDIKLGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           EN K FL +N+++   IE  +R+
Sbjct: 304 ENVKKFLADNMDLTNEIEEKVRK 326


>gi|302876044|ref|YP_003844677.1| recA protein [Clostridium cellulovorans 743B]
 gi|307686762|ref|ZP_07629208.1| recombinase A [Clostridium cellulovorans 743B]
 gi|302578901|gb|ADL52913.1| recA protein [Clostridium cellulovorans 743B]
          Length = 360

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/355 (62%), Positives = 290/355 (81%), Gaps = 4/355 (1%)

Query: 7   MNIV-DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           MNI  DK KA+E  +SQI++ +GKG+IM+L  + S+ + IE +S+GSL LDIALG+GG P
Sbjct: 1   MNINNDKIKAIETVMSQIEKQFGKGSIMKL-DKASVMD-IETISTGSLALDIALGVGGVP 58

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+EIYGPESSGKTT+ LH IA++QK GGT AF+DAEHALD  YAR+LGV +  LL+S
Sbjct: 59  RGRIIEIYGPESSGKTTVTLHVIAEAQKMGGTAAFIDAEHALDPSYARRLGVKVNELLVS 118

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI + LVRS +VD+IV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRK
Sbjct: 119 QPDNGEQALEIVEALVRSNSVDVIVVDSVAALVPRAEIEGEMGDSHIGLQARLMSQALRK 178

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT++I++SKC+++FINQ+R KIG+MFGSPETTTGG ALKFYSS+RLDIR++ ++K  + I
Sbjct: 179 LTAAINKSKCVVIFINQLREKIGIMFGSPETTTGGRALKFYSSIRLDIRKIDTLKSGEEI 238

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+TR+KV+KNK+A PFK++EFDIMY EGIS  G+LID+ V   IV+KSGAWFS+K  R
Sbjct: 239 LGNRTRIKVIKNKVAPPFKKIEFDIMYNEGISREGDLIDIAVNEGIVEKSGAWFSYKATR 298

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGL-VADSLLQEPAINTKDDADKDDT 359
           LGQGRENSK+FL+EN+ +A  IE+L+RQ   L +  S++ E  I  +   +++D 
Sbjct: 299 LGQGRENSKLFLKENLAVASEIENLIRQKYNLPLKKSVINEEIIEKELLGEEEDV 353


>gi|50122291|ref|YP_051458.1| recombinase A [Pectobacterium atrosepticum SCRI1043]
 gi|59798238|sp|Q6D1S8|RECA_ERWCT RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|49612817|emb|CAG76267.1| RecA protein (recombinase A) [Pectobacterium atrosepticum SCRI1043]
          Length = 357

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 211/343 (61%), Positives = 274/343 (79%), Gaps = 2/343 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++T
Sbjct: 184 KQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
            N+  FL+EN  I+  ++  LR+      + L    A N+ D+
Sbjct: 304 ANACNFLKENPTISAELDKKLREMLLHKGNELKPAAAGNSHDE 346


>gi|317050275|ref|YP_004111391.1| recA protein [Desulfurispirillum indicum S5]
 gi|316945359|gb|ADU64835.1| recA protein [Desulfurispirillum indicum S5]
          Length = 357

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 210/346 (60%), Positives = 278/346 (80%), Gaps = 8/346 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALE A++QI++ +GKG+IM+LGS G I   I VV SG+L LDIALG+GG+P+GR++
Sbjct: 3   EKQKALELAIAQIEKAHGKGSIMRLGS-GEI-PAIPVVPSGNLALDIALGVGGYPRGRVI 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+LH IA++QK GGT AF+DAE+A D++YARK+G++ + LL+SQPD G
Sbjct: 61  EIYGPESSGKTTLSLHAIAEAQKMGGTAAFIDAENAFDAMYARKIGINTEALLVSQPDYG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D LVRSGA+D+IVIDSVAAL P+AE+EG+MGE+  G QARLMSQALRKLT +I
Sbjct: 121 ESALEIADTLVRSGAIDVIVIDSVAALVPKAELEGEMGEATMGAQARLMSQALRKLTGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++S  +++FINQ+R KIGVMFG+PETTTGGNALKFY+S+RLDIRR+ SIK+   +TGN+ 
Sbjct: 181 NKSHTVVIFINQIRSKIGVMFGNPETTTGGNALKFYASMRLDIRRIASIKEGTDVTGNRA 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK+ EFDI +GEGIS  G +ID+     I+ KSG+W+S+ G+R+GQGR
Sbjct: 241 RVKVVKNKVAPPFKEAEFDITFGEGISSIGTIIDMATDYDILGKSGSWYSYNGERIGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV------ADSLLQEPAINT 350
           EN K +L+E+ E+ + +E  +++  GL+      A    +EPA  T
Sbjct: 301 ENVKTYLKEHPEVTKELERKVKEKVGLIPVLEDDAPQAKEEPAAPT 346


>gi|322382316|ref|ZP_08056223.1| recombinase A-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153669|gb|EFX46044.1| recombinase A-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 336

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/336 (63%), Positives = 269/336 (80%), Gaps = 6/336 (1%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           + QI++ +GKG+IM+LG   S    +E + SGSL LDIALG+GGFP+GRI+EIYGPESSG
Sbjct: 1   MRQIEKQFGKGSIMKLGE--STHNQVETIPSGSLALDIALGVGGFPRGRIIEIYGPESSG 58

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTT+ALH IA+ QKTGG  AF+DAEHALD +YA KLGV++  LL+SQPDTGEQALEI + 
Sbjct: 59  KTTVALHAIAEVQKTGGQAAFIDAEHALDPVYASKLGVNIDELLLSQPDTGEQALEIAEA 118

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           LVRSGAVDII+IDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I++SK I +F
Sbjct: 119 LVRSGAVDIIIIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKSKVIAIF 178

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           INQ+R K+GVMFG+PETT GG ALKFYSSVRLDIRRV SIK  + I GN+TR+KVVKNK+
Sbjct: 179 INQLREKVGVMFGNPETTPGGRALKFYSSVRLDIRRVESIKQGNDIIGNRTRIKVVKNKV 238

Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
           A PFKQ + DIMYGEGIS  G L+D+  +  I++KSGAW+S+   RLGQGREN+K FL+E
Sbjct: 239 APPFKQADVDIMYGEGISKEGSLVDIASEMDIINKSGAWYSYNNDRLGQGRENAKQFLKE 298

Query: 320 NIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           N +I++ IE  +R+ + L        PA+  +++ D
Sbjct: 299 NPQISQEIEQKIREASNLTTTV----PAVTEEENED 330


>gi|289423909|ref|ZP_06425702.1| RecA protein [Peptostreptococcus anaerobius 653-L]
 gi|289155686|gb|EFD04358.1| RecA protein [Peptostreptococcus anaerobius 653-L]
          Length = 351

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 213/334 (63%), Positives = 274/334 (82%), Gaps = 4/334 (1%)

Query: 10  VDKSK--ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +DK+K  AL  AL +I++ +GKG+IM+LG   S+   I+ + +GS+GLD+ALG+GG P+G
Sbjct: 3   IDKNKMDALNEALGKIEKEHGKGSIMKLGETSSL--EIDSIPTGSIGLDVALGVGGLPRG 60

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+E+YGPESSGKTT+ALH IA++QK  G  AF+DAEHALD +YAR LGVD+ NL+ISQP
Sbjct: 61  RIIEVYGPESSGKTTVALHCIAEAQKRDGIAAFIDAEHALDPVYARALGVDIDNLVISQP 120

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQAL+I + L+RSGAVDI+VIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT
Sbjct: 121 DTGEQALDIAESLIRSGAVDILVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLT 180

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            SI +S C+++FINQ+R K+GVMFG+PETTTGG ALKF+SSVRL++RR+ +IK  D + G
Sbjct: 181 GSIKKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFFSSVRLEVRRIETIKQGDKMIG 240

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           ++TRVKVVKNK+A PFKQVEFDIMYG GIS  G+L+++     +V KSGAW+S+K  ++G
Sbjct: 241 SRTRVKVVKNKVAPPFKQVEFDIMYGTGISKMGDLLEVATGIDVVKKSGAWYSYKDSKIG 300

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           QGRENSK FL EN +IA  IE+ +R+  GL  DS
Sbjct: 301 QGRENSKAFLEENEDIANEIEAKVREYYGLDFDS 334


>gi|196247558|ref|ZP_03146260.1| recA protein [Geobacillus sp. G11MC16]
 gi|196212342|gb|EDY07099.1| recA protein [Geobacillus sp. G11MC16]
          Length = 346

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/329 (65%), Positives = 266/329 (80%), Gaps = 2/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  ALE AL QI+R +GKGAIM+LG Q      I  V SGSL LDIALG+GG+P+GRI+
Sbjct: 4   DRQAALEQALKQIERQFGKGAIMKLGEQAE--RQISTVPSGSLALDIALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD IYA+KLGV++  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTVALHAIAEVQKQGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDIIVIDSVAAL P+AEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 122 EQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLSGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRL++RR   IK  + + GN+T
Sbjct: 182 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYASVRLEVRRAEQIKQGNDMVGNKT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  + DIMYGEGIS  GE+ID+  +  IV KSG+W+S+K +RLGQGR
Sbjct: 242 KIKVVKNKVAPPFKTADVDIMYGEGISREGEIIDMAAELDIVQKSGSWYSYKDERLGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           EN+K FL+EN  IAE I   +R++ G+ A
Sbjct: 302 ENAKQFLKENPHIAEEIARAIRKHYGIDA 330


>gi|315607474|ref|ZP_07882469.1| recombination protein A [Prevotella buccae ATCC 33574]
 gi|315250657|gb|EFU30651.1| recombination protein A [Prevotella buccae ATCC 33574]
          Length = 341

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 206/322 (63%), Positives = 267/322 (82%), Gaps = 2/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+AA+++I++ +GKG+IM++G +    E +EV+ +GS+ LD+ALG+GG+P+GRI+E
Sbjct: 15  KLKALQAAMAKIEKDFGKGSIMRMGDEQ--IENVEVIHTGSIALDVALGVGGYPRGRIIE 72

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD GE
Sbjct: 73  IYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDNGE 132

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RS A+DI+VIDSVAALTP+ EIEGDMG+S  G+QARLMSQALRKLTS+IS
Sbjct: 133 QALEIADQLIRSSAIDILVIDSVAALTPKKEIEGDMGDSAVGLQARLMSQALRKLTSTIS 192

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR+  SIKD D I GNQ R
Sbjct: 193 KTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRKTTSIKDGDQIIGNQVR 252

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV+KNK+A PF++ EF+I +GEGIS  GE++DLGV+  IV KSG+WFS+ G +LGQGR+
Sbjct: 253 VKVIKNKVAPPFRKAEFEITFGEGISKVGEILDLGVEYDIVKKSGSWFSYNGSKLGQGRD 312

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
            +K  L++N E+ E +E+ +++
Sbjct: 313 ATKNLLKDNPELCEELEAKIKE 334


>gi|300692434|ref|YP_003753429.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Ralstonia solanacearum PSI07]
 gi|299079494|emb|CBJ52170.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Ralstonia solanacearum PSI07]
          Length = 352

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 215/316 (68%), Positives = 272/316 (86%), Gaps = 2/316 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G   +  E ++VVS+GSLGLD+ALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 25  IEKQFGKGSIMKMGD--AEVEPVQVVSTGSLGLDVALGVGGLPRGRVVEIYGPESSGKTT 82

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +A+ QK GGTCAF+DAEHALD  YA KLGV + +LLISQPDTGEQALEI D LVR
Sbjct: 83  LTLQVVAEMQKLGGTCAFIDAEHALDVTYADKLGVKVPDLLISQPDTGEQALEIADALVR 142

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG+VD+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 143 SGSVDLIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 202

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T+VKVVKNK+A P
Sbjct: 203 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKRGDEVVGNETKVKVVKNKVAPP 262

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YG G+S  GE+IDLGV+A +V+KSGAW+S+ G R+GQGR+N + FLREN E
Sbjct: 263 FREAIFDILYGAGVSREGEIIDLGVEAKVVEKSGAWYSYNGDRIGQGRDNCREFLRENPE 322

Query: 323 IAENIESLLRQNAGLV 338
           +A  IE+ +R++ G+V
Sbjct: 323 LAREIENKVREHLGVV 338


>gi|132242|sp|P26348|RECA_VIBAN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|155257|gb|AAA27554.1| DNA repair protein [Listonella anguillarum]
          Length = 348

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 210/339 (61%), Positives = 275/339 (81%), Gaps = 2/339 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTLTLELIAAAQRVGKTCAFIDAEHALDPIYAKKLGVNIDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D+IVIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAIDVIVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D   GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEAVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ +  I+YG+G +  GEL+DLGVK  +V+K+GAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKQADTQILYGQGFNREGELVDLGVKHKLVEKAGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
            N+  FLREN   A  +++ LR+     A+ +++EP ++
Sbjct: 302 ANACKFLRENPAAAMALDTKLREMLLNPAELIVEEPILS 340


>gi|15640565|ref|NP_230194.1| recombinase A [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|9654971|gb|AAF93711.1| recA protein [Vibrio cholerae O1 biovar El Tor str. N16961]
          Length = 412

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/332 (62%), Positives = 272/332 (81%), Gaps = 2/332 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           DY + +   +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG 
Sbjct: 53  DYPERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 110

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  
Sbjct: 111 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 170

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 171 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 230

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 231 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 290

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+
Sbjct: 291 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSY 350

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
            G ++GQG+ N+  +L+EN EIA+ ++  LR+
Sbjct: 351 NGDKIGQGKANAYKYLKENPEIAKTLDKKLRE 382


>gi|27364959|ref|NP_760487.1| recombinase A [Vibrio vulnificus CMCP6]
 gi|320155346|ref|YP_004187725.1| RecA protein [Vibrio vulnificus MO6-24/O]
 gi|30173260|sp|Q8DC51|RECA_VIBVU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|60393009|sp|Q7MHR4|RECA_VIBVY RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|27361105|gb|AAO10014.1| protein RecA [Vibrio vulnificus CMCP6]
 gi|319930658|gb|ADV85522.1| RecA protein [Vibrio vulnificus MO6-24/O]
          Length = 349

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 204/323 (63%), Positives = 270/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTG
Sbjct: 62  EIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDQLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +++KSGAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKCKLIEKSGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN+++A+ +++ LR+
Sbjct: 302 ANACKYLKENVDVAKVLDTKLRE 324


>gi|304316844|ref|YP_003851989.1| recA protein [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778346|gb|ADL68905.1| recA protein [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 343

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/330 (63%), Positives = 274/330 (83%), Gaps = 2/330 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           +++K KAL+ A+SQI+R +GKG+IM+LG    +   +EV+S+GS+ LDIALG+GG P+GR
Sbjct: 1   MIEKQKALDMAISQIERQFGKGSIMRLGDNSKL--NVEVISTGSIDLDIALGVGGVPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EI+GPESSGKTT+ALH +A++QK GGT AF+DAEHALD  YA+ +GV++ NLL+SQPD
Sbjct: 59  IIEIFGPESSGKTTIALHILAEAQKLGGTGAFIDAEHALDPAYAKNVGVNIDNLLVSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGA+D+IVIDSVAAL P+AEI+GDMG++  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIVEALVRSGAIDVIVIDSVAALVPKAEIDGDMGDAHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            IS++K + VFINQ+R K+GVMFG+PETT GG ALKFYS++RLD+R+V +IK  + + GN
Sbjct: 179 IISKTKSVAVFINQLREKVGVMFGNPETTPGGRALKFYSTIRLDVRKVDAIKQGNDVVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++DL     I+DKSGAW+S+   RLGQ
Sbjct: 239 RTRVKVVKNKVAPPFKQAEFDIMYGEGISREGSILDLAASIDIIDKSGAWYSYGDIRLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLV 338
           GREN+K +L++N  IA+ IE+ +R+N  L+
Sbjct: 299 GRENAKQYLKDNKSIADEIENKIRENFNLL 328


>gi|254850782|ref|ZP_05240132.1| recombinase A recA [Vibrio cholerae MO10]
 gi|254846487|gb|EET24901.1| recombinase A recA [Vibrio cholerae MO10]
          Length = 412

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/332 (62%), Positives = 272/332 (81%), Gaps = 2/332 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           DY + +   +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG 
Sbjct: 53  DYPERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 110

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  
Sbjct: 111 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 170

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 171 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 230

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 231 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 290

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+
Sbjct: 291 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSY 350

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
            G ++GQG+ N+  +L+EN EIA+ ++  LR+
Sbjct: 351 NGDKIGQGKANACKYLKENPEIAKTLDKKLRE 382


>gi|160896323|ref|YP_001561905.1| recA protein [Delftia acidovorans SPH-1]
 gi|238687174|sp|A9BQB0|RECA_DELAS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|160361907|gb|ABX33520.1| recA protein [Delftia acidovorans SPH-1]
          Length = 367

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 215/315 (68%), Positives = 272/315 (86%), Gaps = 1/315 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG IM+LG +G   + I+VVS+GSLGLDIALG+GG P+GR++EIYGPESSGKTT
Sbjct: 23  IEKQFGKGTIMRLG-EGEAIQDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTT 81

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGTCAF+DAEHALD+ YA+KLGV+L  +LISQPDTGEQALEI D LVR
Sbjct: 82  LTLQVIAEMQKQGGTCAFIDAEHALDTSYAQKLGVNLNEVLISQPDTGEQALEIVDSLVR 141

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTPRAEIEG+MG+ LPG+QARLMSQALRKLT++I ++ C+++FINQ
Sbjct: 142 SGAVDMIVVDSVAALTPRAEIEGEMGDQLPGLQARLMSQALRKLTATIKKTNCMVIFINQ 201

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK  D   GN+T+VKVVKNK++ P
Sbjct: 202 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPP 261

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FK  EFDI++GEGIS  GE++D+GV A I+DKSGAW+++ G+++GQGR+N++ FLREN  
Sbjct: 262 FKTAEFDILFGEGISREGEILDMGVNAKILDKSGAWYAYNGEKIGQGRDNAREFLRENSG 321

Query: 323 IAENIESLLRQNAGL 337
           +A  IE+ +R + G+
Sbjct: 322 LAVEIENKVRDSLGI 336


>gi|109899564|ref|YP_662819.1| recA protein [Pseudoalteromonas atlantica T6c]
 gi|122971674|sp|Q15QS3|RECA_PSEA6 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|109701845|gb|ABG41765.1| recA protein [Pseudoalteromonas atlantica T6c]
          Length = 343

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/337 (67%), Positives = 278/337 (82%), Gaps = 2/337 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K++AL AAL QI++ +GKGAIM+LG   ++   IE +S+GSL +DIALGIGG P GR+V
Sbjct: 4   NKTRALTAALGQIEKQFGKGAIMRLGDNQAM--DIEAISTGSLTIDIALGIGGLPCGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAEAQKMGKTCAFVDAEHALDPIYAGKLGVNIDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGAVD++V+DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT +I
Sbjct: 122 EQALEICDMLVRSGAVDVVVVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD D + GN+T
Sbjct: 182 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF IMYG+GI    ELIDLGVK  +V+K+GAW+S+ G+R+GQG+
Sbjct: 242 RVKVVKNKVAPPFKQAEFQIMYGQGICKEAELIDLGVKQKLVEKAGAWYSYNGERIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
            N   +L+E+ E++ +IE  LR    L      +EPA
Sbjct: 302 ANVVKYLKEHTEMSNDIEQKLRAELLLKKTVKAEEPA 338


>gi|33151633|ref|NP_872986.1| recombinase A [Haemophilus ducreyi 35000HP]
 gi|60393016|sp|Q7VNS7|RECA_HAEDU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|33147854|gb|AAP95375.1| RecA protein [Haemophilus ducreyi 35000HP]
          Length = 372

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 221/355 (62%), Positives = 281/355 (79%), Gaps = 3/355 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K+++   K KAL AAL+QI++ +GKG+IM+LG   ++   IE VS+GS+GLD ALGIGG 
Sbjct: 14  KQIDPEQKEKALAAALAQIEKQFGKGSIMRLGDTQAL--DIEAVSTGSIGLDAALGIGGL 71

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P GRIVEIYGPESSGKTTL L  IAQ+Q+ G TCAF+DAEHALD +YARKLGVD+  LLI
Sbjct: 72  PMGRIVEIYGPESSGKTTLTLSVIAQAQRIGKTCAFIDAEHALDPVYARKLGVDIDALLI 131

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALR
Sbjct: 132 SQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSYMGLQARLMSQALR 191

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT++I  + C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G +KD D 
Sbjct: 192 KLTANIKATNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRSGVVKDGDE 251

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + G++T+VK+VKNK+A PF++V+FDIMYGEGI+   EL+ L      + K+GAWFS+ G 
Sbjct: 252 VVGSETKVKIVKNKVAPPFREVQFDIMYGEGIARMNELLILAEANGFIQKAGAWFSYNGT 311

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP-AINTKDDADKDD 358
           ++GQG+ N+  +L+EN E+AE IE  +R    L  D    E   ++  D++D D+
Sbjct: 312 KIGQGKNNAIKWLKENPEVAEKIEQEIRNLLILTPDQPASEKLELDVNDESDFDE 366


>gi|256375557|ref|YP_003099217.1| recA protein [Actinosynnema mirum DSM 43827]
 gi|255919860|gb|ACU35371.1| recA protein [Actinosynnema mirum DSM 43827]
          Length = 347

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 211/329 (64%), Positives = 267/329 (81%), Gaps = 2/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE AL+QI + +GKG++M+LG  G     IEV+ +G++ LD+ALGIGG P+GR+V
Sbjct: 7   DRDKALELALAQIDKQFGKGSVMRLGEDGR--APIEVIPTGAIALDVALGIGGLPRGRVV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YARKLGVD   LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPDYARKLGVDTDALLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDNHVGLQARLMSQALRKITGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+T
Sbjct: 185 NSSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGGEPVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDI+YG GIS  G LID+GV   I+ KSGAW++++G +LGQG+
Sbjct: 245 RVKVVKNKVAPPFKQAEFDILYGHGISREGSLIDMGVDQGILRKSGAWYTYEGDQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           EN++ FLREN ++A  IE  +++  G+ A
Sbjct: 305 ENARKFLRENPDVANEIEKRIKEKLGIGA 333


>gi|224551669|gb|ACN54234.1| RecA [Burkholderia arboris]
          Length = 298

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/291 (71%), Positives = 256/291 (87%), Gaps = 1/291 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           +G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  I
Sbjct: 9   QGSIMRMGD-GDATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 67

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+
Sbjct: 68  AELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 127

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG
Sbjct: 128 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 187

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  F
Sbjct: 188 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 247

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
           DI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLRE
Sbjct: 248 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRE 298


>gi|254226848|ref|ZP_04920419.1| recA protein [Vibrio cholerae V51]
 gi|125620645|gb|EAZ49008.1| recA protein [Vibrio cholerae V51]
          Length = 412

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/332 (62%), Positives = 272/332 (81%), Gaps = 2/332 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           DY + +   +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG 
Sbjct: 53  DYPERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 110

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  
Sbjct: 111 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 170

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 171 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 230

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 231 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 290

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+
Sbjct: 291 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSY 350

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
            G ++GQG+ N+  +L+EN EIA+ ++  LR+
Sbjct: 351 NGDKIGQGKANACKYLKENPEIAKTLDKKLRE 382


>gi|268317727|ref|YP_003291446.1| recA protein [Rhodothermus marinus DSM 4252]
 gi|262335261|gb|ACY49058.1| recA protein [Rhodothermus marinus DSM 4252]
          Length = 347

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 205/326 (62%), Positives = 270/326 (82%), Gaps = 2/326 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K+KALE A+  I++ YGKGAIM+LG   +I   ++V+ +GSL LD ALG+GG P+GRIVE
Sbjct: 8   KAKALELAVKHIEKQYGKGAIMRLGDAPAI--SVDVIPTGSLALDAALGVGGVPRGRIVE 65

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH +A++QK GG CAF+DAEHA D+ YA  LGVDL NLL++QPDTGE
Sbjct: 66  IYGPESSGKTTLALHIMAEAQKLGGACAFIDAEHAFDARYAANLGVDLDNLLVAQPDTGE 125

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL I D LVRSGA+D+IV+DSVAAL P+AEI+GDMG+S  G+QARLMSQALRKLT +I+
Sbjct: 126 QALNICDTLVRSGALDVIVVDSVAALVPQAEIQGDMGDSHVGLQARLMSQALRKLTGTIN 185

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           R++ +L+FINQ+R KIGVM+G+PETTTGG ALKFY+SVR+DIRR+G+IK+   + GN+T+
Sbjct: 186 RTRTVLIFINQLRQKIGVMYGNPETTTGGLALKFYASVRMDIRRIGAIKEGSEVVGNRTK 245

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNK+A PF++ EFDI+YGEGIS  GEL+DL V+ +I+ KSG+W+++  +R+GQGRE
Sbjct: 246 VKIVKNKVAPPFREAEFDIIYGEGISVLGELVDLAVEYNIIQKSGSWYAYGEERIGQGRE 305

Query: 312 NSKIFLRENIEIAENIESLLRQNAGL 337
            +K +LRE  E+ E I   +++  G+
Sbjct: 306 AAKAWLRERPELQEEIRRQVKEAMGV 331


>gi|206890314|ref|YP_002248376.1| RecA protein [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742252|gb|ACI21309.1| RecA protein [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 342

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 212/327 (64%), Positives = 271/327 (82%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KALE A+SQI++ +GKGAIM+LG++    EGI V+ +GS+ LDIA GIGG+P+GR++
Sbjct: 4   DKLKALEIAISQIEKNFGKGAIMRLGTKAHA-EGIGVIPTGSISLDIATGIGGYPRGRVI 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTLALH IA++Q+ GG  AF+DAEHALD  YA KLGVD++NLLISQPDTG
Sbjct: 63  EIFGPESSGKTTLALHAIAEAQRHGGVAAFIDAEHALDVNYASKLGVDVENLLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALE+T+ LVRSGAVDIIVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT++I
Sbjct: 123 EQALEVTETLVRSGAVDIIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTAAI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S+  ++FINQ+R KIGVMFG+PETT GG ALKFY+S+RLDIR++ ++K+    TG + 
Sbjct: 183 SKSQTAVIFINQIRQKIGVMFGNPETTPGGTALKFYASMRLDIRKIDTLKEGQETTGGRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFKQ EFDI + EGIS  GE++DL V+  I++KSGAW+++ G RL QGR
Sbjct: 243 RVKIVKNKVAPPFKQAEFDIYFNEGISKTGEILDLAVEKGIIEKSGAWYNYNGSRLAQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K +L+ + EI   I S +    GL
Sbjct: 303 ENAKEYLKTHPEIFNEIYSKVLDVYGL 329


>gi|254291227|ref|ZP_04962023.1| recA protein [Vibrio cholerae AM-19226]
 gi|150422921|gb|EDN14872.1| recA protein [Vibrio cholerae AM-19226]
          Length = 412

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/332 (62%), Positives = 272/332 (81%), Gaps = 2/332 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           DY + +   +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG 
Sbjct: 53  DYPERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 110

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  
Sbjct: 111 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 170

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 171 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 230

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 231 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 290

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+
Sbjct: 291 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSY 350

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
            G ++GQG+ N+  +L+EN EIA+ ++  LR+
Sbjct: 351 NGDKIGQGKANACKYLKENPEIAKTLDKKLRE 382


>gi|153829927|ref|ZP_01982594.1| recA protein [Vibrio cholerae 623-39]
 gi|297580678|ref|ZP_06942604.1| recombination protein recA [Vibrio cholerae RC385]
 gi|148874615|gb|EDL72750.1| recA protein [Vibrio cholerae 623-39]
 gi|297535094|gb|EFH73929.1| recombination protein recA [Vibrio cholerae RC385]
          Length = 412

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/332 (62%), Positives = 272/332 (81%), Gaps = 2/332 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           DY + +   +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG 
Sbjct: 53  DYPERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 110

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  
Sbjct: 111 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 170

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 171 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 230

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 231 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 290

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+
Sbjct: 291 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSY 350

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
            G ++GQG+ N+  +L+EN EIA+ ++  LR+
Sbjct: 351 NGDKIGQGKANACKYLKENPEIAKTLDKKLRE 382


>gi|121728559|ref|ZP_01681581.1| recA protein [Vibrio cholerae V52]
 gi|227080726|ref|YP_002809277.1| recA protein [Vibrio cholerae M66-2]
 gi|298500955|ref|ZP_07010756.1| recA protein [Vibrio cholerae MAK 757]
 gi|121629171|gb|EAX61612.1| recA protein [Vibrio cholerae V52]
 gi|227008614|gb|ACP04826.1| recA protein [Vibrio cholerae M66-2]
 gi|297540203|gb|EFH76263.1| recA protein [Vibrio cholerae MAK 757]
          Length = 412

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/332 (62%), Positives = 272/332 (81%), Gaps = 2/332 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           DY + +   +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG 
Sbjct: 53  DYPERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 110

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  
Sbjct: 111 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 170

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 171 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 230

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 231 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 290

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+
Sbjct: 291 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSY 350

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
            G ++GQG+ N+  +L+EN EIA+ ++  LR+
Sbjct: 351 NGDKIGQGKANACKYLKENPEIAKTLDKKLRE 382


>gi|227012369|gb|ACP08579.1| recA protein [Vibrio cholerae O395]
          Length = 412

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/332 (62%), Positives = 272/332 (81%), Gaps = 2/332 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           DY + +   +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG 
Sbjct: 53  DYPERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 110

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  
Sbjct: 111 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 170

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 171 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 230

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 231 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 290

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+
Sbjct: 291 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSY 350

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
            G ++GQG+ N+  +L+EN EIA+ ++  LR+
Sbjct: 351 NGDKIGQGKANACKYLKENPEIAKTLDKKLRE 382


>gi|153826919|ref|ZP_01979586.1| recA protein [Vibrio cholerae MZO-2]
 gi|149739222|gb|EDM53490.1| recA protein [Vibrio cholerae MZO-2]
          Length = 412

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/332 (62%), Positives = 272/332 (81%), Gaps = 2/332 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           DY + +   +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG 
Sbjct: 53  DYPERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 110

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  
Sbjct: 111 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 170

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 171 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 230

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 231 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 290

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+
Sbjct: 291 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSY 350

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
            G ++GQG+ N+  +L+EN EIA+ ++  LR+
Sbjct: 351 NGDKIGQGKANACKYLKENPEIAKTLDKKLRE 382


>gi|284007756|emb|CBA73583.1| recombinase A [Arsenophonus nasoniae]
          Length = 356

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 205/322 (63%), Positives = 267/322 (82%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDVALGAGGLPLGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GS+K+ + + G++T
Sbjct: 184 KNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKNGEEVIGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+ + ELIDLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINIYSELIDLGVKYKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N+ ++L+E  +I   ++  LR
Sbjct: 304 ANATVYLKERPQIYTELDKKLR 325


>gi|262190761|ref|ZP_06048988.1| RecA protein [Vibrio cholerae CT 5369-93]
 gi|262033346|gb|EEY51857.1| RecA protein [Vibrio cholerae CT 5369-93]
          Length = 354

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 210/337 (62%), Positives = 274/337 (81%), Gaps = 8/337 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTG
Sbjct: 62  EIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLR------QNAGLVADS 341
            N+  +L+EN EIA+ ++  LR      +N  L+A+S
Sbjct: 302 ANACKYLKENPEIAKTLDKKLREMLLNPENMQLIAES 338


>gi|302542080|ref|ZP_07294422.1| RecA protein [Streptomyces hygroscopicus ATCC 53653]
 gi|302459698|gb|EFL22791.1| RecA protein [Streptomyces himastatinicus ATCC 53653]
          Length = 376

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/327 (63%), Positives = 272/327 (83%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+AAL+QI+R +GKGA+M++G + +  + IEV+ +GS  LD+ALG+GG P+GR+V
Sbjct: 5   DREKALDAALAQIERQFGKGAVMRMGDRPN--DPIEVIPTGSTALDVALGVGGIPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL LH +A +Q+ GG  AFVDAEHALD  YA+KLGVD  +L++SQPD G
Sbjct: 63  EVYGPESSGKTTLTLHAVANAQRAGGAVAFVDAEHALDPDYAQKLGVDTDSLILSQPDNG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+TS++
Sbjct: 123 EQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITSAL 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD     GN+T
Sbjct: 183 NQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTDAVGNRT 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R KVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V KSGAW++++G +LGQG+
Sbjct: 243 RCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKSGAWYTYEGDQLGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN++ FL++N ++A  IE  +++  G+
Sbjct: 303 ENARNFLKDNPDLANEIEKKIKEKLGI 329


>gi|132238|sp|P17479|RECA_SERMA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|152849|gb|AAA26567.1| RecA protein [Serratia marcescens]
          Length = 354

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/314 (66%), Positives = 263/314 (83%), Gaps = 2/314 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+  GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQIMYGEGINSRGELVDLGVKHKMIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIA 324
            N+  FL+EN  IA
Sbjct: 304 ANACNFLKENPAIA 317


>gi|295399886|ref|ZP_06809867.1| recA protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|312111602|ref|YP_003989918.1| recA protein [Geobacillus sp. Y4.1MC1]
 gi|294978289|gb|EFG53886.1| recA protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|311216703|gb|ADP75307.1| recA protein [Geobacillus sp. Y4.1MC1]
          Length = 350

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/331 (64%), Positives = 268/331 (80%), Gaps = 2/331 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  ALE AL QI+R +GKG+IM+LG Q      I  VSSGSL LDIALG+GG+P+GRI+
Sbjct: 4   DRQAALEQALKQIERQFGKGSIMRLGEQTD--RKISTVSSGSLALDIALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD IYA+KLGV++  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTVALHAIAEVQKQGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDIIVIDSVAAL P+AEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 122 EQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLSGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRL++RR   IK  + + GN+T
Sbjct: 182 NKSKAIAIFINQIREKVGVMFGNPETTPGGRALKFYASVRLEVRRAEQIKQGNEMVGNKT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  + DIMYGEGIS  GE+ID+  +  IV KSG+W+S+K +RLGQGR
Sbjct: 242 KIKVVKNKVAPPFKTADVDIMYGEGISREGEIIDMASELDIVQKSGSWYSYKDERLGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           EN+K FL+EN  IAE I   +R++ G+ + S
Sbjct: 302 ENAKQFLKENPHIAEEIAQEIRKHYGIESPS 332


>gi|332039278|gb|EGI75691.1| reca protein [Hylemonella gracilis ATCC 19624]
          Length = 356

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 216/315 (68%), Positives = 274/315 (86%), Gaps = 1/315 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG IM+LG +G   E I+VVS+GSLGLDIALG+GG P+GR++EIYGPESSGKTT
Sbjct: 23  IEKQFGKGTIMRLG-EGEKIEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTT 81

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK  GTCAFVDAEHALD+ YA+KLGV+L++LLISQPDTGEQALEI D LVR
Sbjct: 82  LTLQVIAEMQKMDGTCAFVDAEHALDTQYAQKLGVNLQDLLISQPDTGEQALEIVDSLVR 141

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AEIEG+MG+SLPG+QARLMSQALRKLT++I ++   ++FINQ
Sbjct: 142 SGAVDLIVVDSVAALTPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNTTVIFINQ 201

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK  +   GN+T+VKVVKNK++ P
Sbjct: 202 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGEEAIGNETKVKVVKNKVSPP 261

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FK  EFDI++GEG+S  GE+ID+GV A I+DKSGAW+++ G+++GQGR+N++ FLREN E
Sbjct: 262 FKSAEFDILFGEGVSREGEVIDMGVTAHIIDKSGAWYAYNGEKIGQGRDNAREFLRENPE 321

Query: 323 IAENIESLLRQNAGL 337
           +A  IE+ +R++ G+
Sbjct: 322 LALEIENKVRESLGI 336


>gi|283798535|ref|ZP_06347688.1| protein RecA [Clostridium sp. M62/1]
 gi|291073798|gb|EFE11162.1| protein RecA [Clostridium sp. M62/1]
 gi|295090129|emb|CBK76236.1| protein RecA [Clostridium cf. saccharolyticum K10]
 gi|295115571|emb|CBL36418.1| protein RecA [butyrate-producing bacterium SM4/1]
          Length = 365

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 204/331 (61%), Positives = 273/331 (82%), Gaps = 1/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+  +K KAL+AAL+QI++ YGKG++M+LG  G+    IE V +GSL LDIALG+GG P+
Sbjct: 5   MDRDEKLKALDAALTQIEKAYGKGSVMKLGDSGANMN-IETVPTGSLSLDIALGLGGVPR 63

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E+YGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YA+ +GVD+ NL ISQ
Sbjct: 64  GRIIEVYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQ 123

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL
Sbjct: 124 PDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKL 183

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+ IS+S CI++FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+D+RR+ ++K    + 
Sbjct: 184 TAIISKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYASVRMDVRRIETLKQGGEMV 243

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ R+KVVKNK+A PFK+ EFDIM+G+GIS  G+++DL  K +IV+KSGAW+++ G ++
Sbjct: 244 GNRVRIKVVKNKIAPPFKEAEFDIMFGKGISKEGDILDLAAKENIVEKSGAWYAYNGSKI 303

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQGREN+K FL+ N E+ + IE+ +R   GL
Sbjct: 304 GQGRENAKNFLQANQELCQEIEAKVRAKYGL 334


>gi|258654119|ref|YP_003203275.1| recA protein [Nakamurella multipartita DSM 44233]
 gi|258557344|gb|ACV80286.1| recA protein [Nakamurella multipartita DSM 44233]
          Length = 352

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 212/340 (62%), Positives = 268/340 (78%), Gaps = 2/340 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+  D+ KAL  AL+QI++ YGKG+IM+LG  G     +EV+ +GS+ LD+ALGIGG P+
Sbjct: 8   MSAPDREKALGIALAQIEKQYGKGSIMRLGDDGR--APVEVIPTGSIALDVALGIGGLPR 65

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++EIYGPESSGKTTL LH +A  Q  GG  AF+DAEHALD  YAR LGVD   LL+SQ
Sbjct: 66  GRVIEIYGPESSGKTTLTLHAVASVQAAGGIAAFIDAEHALDPEYARSLGVDTDALLVSQ 125

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI DML+RSGA+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 126 PDTGEQALEIADMLIRSGAIDLVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 185

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
             ++S +   ++FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD   + 
Sbjct: 186 AGALSTTNTTMIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDIRRIEALKDGAEVV 245

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNKMA PFKQ EFDI+YG GIS  G LID+GV+  +V K+GAW+++ G++L
Sbjct: 246 GNRTRVKVVKNKMAPPFKQAEFDIIYGRGISREGSLIDVGVEQGLVRKAGAWYTYDGEQL 305

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           GQG+EN + FLREN +IA  IE  +++  G+ A     EP
Sbjct: 306 GQGKENVRTFLRENPDIANEIEKRIKEKLGVGARIDQDEP 345


>gi|225025099|ref|ZP_03714291.1| hypothetical protein EIKCOROL_01989 [Eikenella corrodens ATCC
           23834]
 gi|224942060|gb|EEG23269.1| hypothetical protein EIKCOROL_01989 [Eikenella corrodens ATCC
           23834]
          Length = 361

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 210/317 (66%), Positives = 264/317 (83%), Gaps = 3/317 (0%)

Query: 22  QIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           QI++ +GKGAIM++ GS     E +EV+S+GSLG+D+ALG+GG P+GRIVEI+GPESSGK
Sbjct: 28  QIEKNFGKGAIMKMDGSHQD--ENLEVISTGSLGVDLALGVGGLPRGRIVEIFGPESSGK 85

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L TIAQ QK GG CAF+DAE+A D IYARKLGV ++ L++SQPDTGEQALEI DML
Sbjct: 86  TTLCLETIAQCQKNGGVCAFIDAENAFDPIYARKLGVKVEELMVSQPDTGEQALEICDML 145

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSG VD++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  I ++  ++VFI
Sbjct: 146 VRSGGVDMVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGHIKKTNTLVVFI 205

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIR+   IK  D I GN+TRVKV+KNK+A
Sbjct: 206 NQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRKGTPIKKGDDILGNETRVKVIKNKVA 265

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
            PF+Q EFDI+YGEG+S  GELID G K  I+ KSGAW+S+ G ++GQG++N +++L+EN
Sbjct: 266 PPFRQAEFDILYGEGVSREGELIDWGDKVGIIKKSGAWYSYNGDKIGQGKDNVRVWLKEN 325

Query: 321 IEIAENIESLLRQNAGL 337
            E+A  IE+ +R+  G+
Sbjct: 326 PEVAAEIEAQIRKEVGI 342


>gi|160880571|ref|YP_001559539.1| recA protein [Clostridium phytofermentans ISDg]
 gi|160429237|gb|ABX42800.1| recA protein [Clostridium phytofermentans ISDg]
          Length = 347

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 204/327 (62%), Positives = 268/327 (81%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KALE+AL+QI++ YGKG++M+LG  G+    +E V +GS+ LDIALG+GG PKGR+V
Sbjct: 5   DKIKALESALAQIEKQYGKGSVMKLGETGTRMN-VETVPTGSISLDIALGLGGIPKGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YA+ +GVD+ NL ISQPD G
Sbjct: 64  EVYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+GDMG+S  G+QARLMSQALRKLT+ I
Sbjct: 124 EQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKLTAVI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S CI++FINQ+R K+GVMFG+PETTTGG ALKFYSS+RLD+RR+ ++K    I GN+T
Sbjct: 184 SKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYSSIRLDVRRIEALKLGGDIVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PFK+ EFDIM+G+GIS  G+++DL     I+ KSGAW+++   ++GQGR
Sbjct: 244 RIKVVKNKIAPPFKEAEFDIMFGQGISREGDILDLAANEGIIVKSGAWYAYNESKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K+FL+EN  I E +E  +R+   L
Sbjct: 304 ENAKVFLKENPNILEEVEVQVRERHNL 330


>gi|291166395|gb|EFE28441.1| RecA protein [Filifactor alocis ATCC 35896]
          Length = 378

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/357 (59%), Positives = 282/357 (78%), Gaps = 11/357 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ K L+A +S+I+R +GKGA+M LG   +I   IE +S+GSLGLD+A+G+GG PKGRI+
Sbjct: 20  ERKKVLDATISKIERDFGKGAVMMLGD--NIDMNIETISTGSLGLDLAIGVGGLPKGRII 77

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A++QK GG  AF+DAEHA+D +YA+ LGVD+ NL+ISQPD G
Sbjct: 78  EIYGPESSGKTTVALHAVAEAQKAGGLAAFIDAEHAMDPVYAKALGVDIDNLIISQPDNG 137

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LV+SG +DI+VIDSVAAL PR+EIEGDMG+S  G+QARLMSQALRKLT+S 
Sbjct: 138 EQALEIAESLVKSGVIDILVIDSVAALVPRSEIEGDMGDSHVGLQARLMSQALRKLTAST 197

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +R K +++FINQ+R KIGVMFG+PETTTGG ALKFYS++RLDIR+  +IK  D + GN+T
Sbjct: 198 NRFKTVIIFINQLREKIGVMFGNPETTTGGRALKFYSTLRLDIRKFDTIKKNDVVVGNRT 257

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EFDIMYGEGIS  GE++D+  +  I++K+G+W+S+   ++GQGR
Sbjct: 258 RVKVVKNKVAPPFRQAEFDIMYGEGISRAGEIVDIASQYGIIEKAGSWYSYNDMKIGQGR 317

Query: 311 ENSKIFLRENIEIAENIE-----SLLRQNAG---LVADSLLQEPAINTKDDADKDDT 359
           EN K FL +N E+ E IE     +LL+ +     L+ D+ L E  +N  D +D DDT
Sbjct: 318 ENVKQFLLDNQEMMEEIEGQVRRTLLKSHVSENDLIEDA-LSETKVNMDDFSDLDDT 373


>gi|261210114|ref|ZP_05924412.1| RecA protein [Vibrio sp. RC341]
 gi|262401752|ref|ZP_06078318.1| RecA protein [Vibrio sp. RC586]
 gi|260840879|gb|EEX67421.1| RecA protein [Vibrio sp. RC341]
 gi|262352169|gb|EEZ01299.1| RecA protein [Vibrio sp. RC586]
          Length = 354

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 206/323 (63%), Positives = 268/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTG
Sbjct: 62  EIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN EIA+ ++  LR+
Sbjct: 302 ANACKYLKENTEIAKTLDKKLRE 324


>gi|85058515|ref|YP_454217.1| recombinase A [Sodalis glossinidius str. 'morsitans']
 gi|60392997|sp|P62220|RECA_SODGL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123725441|sp|Q2NVL3|RECA_SODGM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|37359204|gb|AAN73888.1| DNA recombinase A [Sodalis glossinidius]
 gi|84779035|dbj|BAE73812.1| DNA recombinase A RecA [Sodalis glossinidius str. 'morsitans']
          Length = 355

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/322 (64%), Positives = 267/322 (82%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+   TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREVKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GS+K+ D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKEGDVVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+  GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQIMYGEGINIRGELVDLGVKHKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N+  FL+++ E+A  ++  LR
Sbjct: 304 ANACSFLKDHPEVAAELDKKLR 325


>gi|308237903|emb|CBK52098.1| RecA protein [Acidithiobacillus ferrooxidans]
          Length = 284

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 206/280 (73%), Positives = 247/280 (88%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLD+ALG+GG P+GR+VEIYGPESSGKTTL LH IA  Q  GGT AF+DAEHALD
Sbjct: 1   STGSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLTLHAIASCQAAGGTAAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
             YA KLGVDL+NLLISQPDTGEQALEI DMLVRSGAVD+IVIDSVAALTP+AEIEGDMG
Sbjct: 61  PGYAHKLGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGDMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRKLT++ISR+  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+S
Sbjct: 121 DSHVGLQARLMSQALRKLTANISRTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           VRLDIRR+G+IK  D + GN TRVKVVKNK+A PF++ EF I YGEGIS   EL+DLGVK
Sbjct: 181 VRLDIRRIGAIKKSDEVVGNDTRVKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVK 240

Query: 289 ASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
             IV+KSGAW+S++G+R+GQG++N++ +L+E+ E+A NIE
Sbjct: 241 FDIVEKSGAWYSYQGERIGQGKDNARQYLKEHPELAANIE 280


>gi|42416871|gb|AAS16317.1| RecA [Mycobacterium mageritense]
          Length = 349

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/330 (62%), Positives = 271/330 (82%), Gaps = 2/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 7   DREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRVV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+T
Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG+
Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           EN++ FL EN+++A  IE  +++  G+ AD
Sbjct: 305 ENARKFLLENVDVANEIEKKIKEKLGIGAD 334


>gi|262172370|ref|ZP_06040048.1| RecA protein [Vibrio mimicus MB-451]
 gi|261893446|gb|EEY39432.1| RecA protein [Vibrio mimicus MB-451]
          Length = 354

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 206/323 (63%), Positives = 268/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTG
Sbjct: 62  EIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN EIA+ ++  LR+
Sbjct: 302 ANACKYLKENTEIAKTLDKKLRE 324


>gi|288556912|ref|YP_003428847.1| recombinase A [Bacillus pseudofirmus OF4]
 gi|288548072|gb|ADC51955.1| recombinase A [Bacillus pseudofirmus OF4]
          Length = 349

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 210/327 (64%), Positives = 270/327 (82%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG Q  + + +  VSSG+L LDIALG+GG+P+GRI+
Sbjct: 3   DRKAALDMALRQIEKQFGKGSIMKLGEQ--VDQRVSTVSSGALALDIALGVGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ Q+ GG  AF+DAEHALD +YA+KLGV++  LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVALHAIAEIQRNGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVD+IVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQALEIAEALVRSGAVDMIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I VFINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR  ++K  + + GN+T
Sbjct: 181 NKSKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMVGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+Q E DIMYGEGIS  G ++D+     IV KSGAW+SFK +RLGQGR
Sbjct: 241 KIKVVKNKVAPPFRQAEVDIMYGEGISREGSILDIAADLDIVLKSGAWYSFKEERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           ENSK +L+EN ++A  IE+L+R + GL
Sbjct: 301 ENSKQYLKENPDVASEIETLIRDHHGL 327


>gi|406794|emb|CAA53084.1| RecA protein [Yersinia pestis]
          Length = 356

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/323 (64%), Positives = 266/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGDVVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKLKLIEKAGAWYSYYGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN   A  ++  LR+
Sbjct: 304 ANASNYLKENPANAAELDKKLRE 326


>gi|119716568|ref|YP_923533.1| recA protein [Nocardioides sp. JS614]
 gi|166220661|sp|A1SJ61|RECA_NOCSJ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|119537229|gb|ABL81846.1| RecA protein [Nocardioides sp. JS614]
          Length = 350

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 205/327 (62%), Positives = 273/327 (83%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+AAL+ I++ +GKG++M+LG +  +   +E++ SGS+ LD+ALG+GGFP+GR+V
Sbjct: 5   DREKALDAALANIEKQFGKGSVMRLGDE--VRAPLEIIPSGSIALDVALGLGGFPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA+ LGVD   LL+SQPD+G
Sbjct: 63  EIYGPESSGKTTVALHAVANAQRAGGIVAFIDAEHALDPDYAKNLGVDTDALLVSQPDSG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 123 EQALEIADMLIRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + SK  ++FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD   + GN+T
Sbjct: 183 NNSKTTMIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDMVGNRT 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDIMYG+GIS  G LID+GV+A +V K+GAW++++G +LGQG+
Sbjct: 243 RVKVVKNKVAPPFKQAEFDIMYGKGISREGGLIDVGVEAGLVRKAGAWYTYEGDQLGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN++ FLR+N ++A  +E  + +  G+
Sbjct: 303 ENARAFLRDNPDLANELEKKILEKLGV 329


>gi|121590677|ref|ZP_01678010.1| recA protein [Vibrio cholerae 2740-80]
 gi|153214933|ref|ZP_01949716.1| recA protein [Vibrio cholerae 1587]
 gi|153819105|ref|ZP_01971772.1| recA protein [Vibrio cholerae NCTC 8457]
 gi|229507155|ref|ZP_04396661.1| RecA protein [Vibrio cholerae BX 330286]
 gi|229508983|ref|ZP_04398471.1| RecA protein [Vibrio cholerae B33]
 gi|229519650|ref|ZP_04409093.1| RecA protein [Vibrio cholerae RC9]
 gi|229520838|ref|ZP_04410260.1| RecA protein [Vibrio cholerae TM 11079-80]
 gi|229530356|ref|ZP_04419744.1| RecA protein [Vibrio cholerae 12129(1)]
 gi|229606167|ref|YP_002876815.1| recombinase A [Vibrio cholerae MJ-1236]
 gi|255744230|ref|ZP_05418183.1| RecA protein [Vibrio cholera CIRS 101]
 gi|262149024|ref|ZP_06028168.1| RecA protein [Vibrio cholerae INDRE 91/1]
 gi|1172891|sp|P45383|RECA_VIBCH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|498639|gb|AAC43291.1| RecA [Vibrio cholerae 2740-80]
 gi|829040|gb|AAB59100.1| putative [Vibrio cholerae]
 gi|121547463|gb|EAX57571.1| recA protein [Vibrio cholerae 2740-80]
 gi|124115006|gb|EAY33826.1| recA protein [Vibrio cholerae 1587]
 gi|126510337|gb|EAZ72931.1| recA protein [Vibrio cholerae NCTC 8457]
 gi|229332129|gb|EEN97617.1| RecA protein [Vibrio cholerae 12129(1)]
 gi|229342071|gb|EEO07067.1| RecA protein [Vibrio cholerae TM 11079-80]
 gi|229344339|gb|EEO09314.1| RecA protein [Vibrio cholerae RC9]
 gi|229353908|gb|EEO18842.1| RecA protein [Vibrio cholerae B33]
 gi|229355900|gb|EEO20820.1| RecA protein [Vibrio cholerae BX 330286]
 gi|229368822|gb|ACQ59245.1| RecA protein [Vibrio cholerae MJ-1236]
 gi|255738170|gb|EET93562.1| RecA protein [Vibrio cholera CIRS 101]
 gi|262031169|gb|EEY49789.1| RecA protein [Vibrio cholerae INDRE 91/1]
 gi|327483362|gb|AEA77769.1| RecA protein [Vibrio cholerae LMA3894-4]
          Length = 354

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 206/323 (63%), Positives = 268/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTG
Sbjct: 62  EIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN EIA+ ++  LR+
Sbjct: 302 ANACKYLKENPEIAKTLDKKLRE 324


>gi|42416883|gb|AAS16323.1| RecA [Mycobacterium immunogenum]
          Length = 346

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/329 (62%), Positives = 271/329 (82%), Gaps = 2/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE AL+QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 6   DREKALELALAQIDKSFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLVRSGAIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD     GN+T
Sbjct: 184 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTEAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG+
Sbjct: 244 RVKVVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           EN++ FL EN+++A  IE  +++  G+ A
Sbjct: 304 ENARNFLLENVDVANEIEKKIKEKLGIGA 332


>gi|313904906|ref|ZP_07838277.1| recA protein [Eubacterium cellulosolvens 6]
 gi|313470163|gb|EFR65494.1| recA protein [Eubacterium cellulosolvens 6]
          Length = 346

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/348 (59%), Positives = 275/348 (79%), Gaps = 8/348 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+ ALSQI++ +GKG +M+LG QG+    +E + +GSL LDIALG+GG P+GRIV
Sbjct: 6   NKMKALDVALSQIEKQFGKGTVMKLGDQGASLN-VEAIPTGSLSLDIALGVGGIPRGRIV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +++ QK GG   F+DAEHALD +YA+ +GVD+ NL ISQPD+G
Sbjct: 65  EIYGPESSGKTTVALHMVSEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQPDSG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ +VRSGAVDII++DSVAAL P+AEI+G+MG+S  G+QAR+MSQA RKLT++I
Sbjct: 125 EQALEITETMVRSGAVDIIIVDSVAALVPKAEIDGEMGDSHVGLQARMMSQACRKLTAAI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++ C++VFINQ+R K+GVMFG+PETTTGG ALKFY+SVRLD+RRV S+K    + GN T
Sbjct: 185 SKTNCVVVFINQLREKVGVMFGNPETTTGGRALKFYASVRLDVRRVESLKQGGDVVGNHT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFKQ EFDIM+G+GIS   +++DL     IV KSGAW+++ G+++GQGR
Sbjct: 245 RVKIVKNKVAPPFKQAEFDIMFGKGISREADILDLAANLGIVQKSGAWYAYLGEKIGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           EN+K +L EN++    IE+ +R+  GL+       PA     DA+  D
Sbjct: 305 ENAKQYLSENVDTMNEIETKVREAYGLI-------PASEAAGDAEGKD 345


>gi|291525257|emb|CBK90844.1| protein RecA [Eubacterium rectale DSM 17629]
 gi|291529284|emb|CBK94870.1| protein RecA [Eubacterium rectale M104/1]
          Length = 350

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 205/322 (63%), Positives = 265/322 (82%), Gaps = 1/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+AA++QI++ YGKG++M+LG   +    +E V +GSL LDIALG+GG PKGRI+
Sbjct: 5   DKLKALDAAIAQIEKQYGKGSVMKLGDNSANMN-VETVPTGSLSLDIALGLGGLPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YAR +GVD+ NL ISQPD G
Sbjct: 64  EVYGPESSGKTTVALHCVAEVQKRGGIAGFIDAEHALDPVYARNIGVDIDNLYISQPDCG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ +VRSGAVDI+V+DSVAAL P+AEI+GDMG+S  G+QARLMSQALRKLT+ I
Sbjct: 124 EQALEITETMVRSGAVDIVVVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKLTAVI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S CI++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+RR  S+K    I GN  
Sbjct: 184 SKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRRTESLKQGGEIVGNHV 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++ EFDIM+G+GIS  G+++DL V A IV+KSGAW++++G ++GQGR
Sbjct: 244 RVKVVKNKIAPPFREAEFDIMFGQGISREGDVLDLAVNAGIVNKSGAWYAYEGDKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           EN+K ++ EN    + +E+ +R
Sbjct: 304 ENAKTYIHENPAFFDMLEAKVR 325


>gi|261416758|ref|YP_003250441.1| recA protein [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261373214|gb|ACX75959.1| recA protein [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302326741|gb|ADL25942.1| RecA protein [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 367

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/346 (60%), Positives = 280/346 (80%), Gaps = 3/346 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K+KA+EAA++QI++ YGKG+IM LG Q    E I V+ +G + LD+ALG+GGFP+GRI+
Sbjct: 15  EKAKAVEAAIAQIEKNYGKGSIMALGQQP--VEDIPVIPTGCIQLDMALGVGGFPRGRII 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH IA++QK GG  AF+DAEHA D++YARKLGVD+++LL+SQPDTG
Sbjct: 73  EIYGPESSGKTTLALHAIAEAQKLGGVAAFIDAEHAFDAVYARKLGVDIESLLVSQPDTG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL+I + LVRSGA+DIIV+DSVAAL P+AEI G+MG++  G+QARLMSQALRKLT  +
Sbjct: 133 EQALDIAETLVRSGAIDIIVVDSVAALVPQAEINGEMGDNHVGLQARLMSQALRKLTGIL 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S   ++FINQ+RMKIGVMFG+PETTTGGNALKFY++ R+DIRR+ +IK+ + + GN+T
Sbjct: 193 SKSNTCMLFINQLRMKIGVMFGNPETTTGGNALKFYATQRIDIRRIAAIKNGEEVIGNRT 252

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A+PF Q EFDI+YG GIS    ++DL  +  I+ KSG+WFS+  +R+GQGR
Sbjct: 253 RVKIVKNKVAAPFTQCEFDILYGVGISREASILDLACELDIIQKSGSWFSYNNERIGQGR 312

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE-PAINTKDDAD 355
           EN+++FL++N E+   IE  +R++   V    L E  A++  DD D
Sbjct: 313 ENTRLFLKDNAELCSEIEQKIRESMKDVELFKLGENDAVDLGDDGD 358


>gi|238924585|ref|YP_002938101.1| RecA protein [Eubacterium rectale ATCC 33656]
 gi|238876260|gb|ACR75967.1| RecA protein [Eubacterium rectale ATCC 33656]
          Length = 350

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 205/322 (63%), Positives = 265/322 (82%), Gaps = 1/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+AA++QI++ YGKG++M+LG   +    +E V +GSL LDIALG+GG PKGRI+
Sbjct: 5   DKLKALDAAIAQIEKQYGKGSVMKLGDNSANMN-VETVPTGSLSLDIALGLGGLPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YAR +GVD+ NL ISQPD G
Sbjct: 64  EVYGPESSGKTTVALHCVAEVQKRGGIAGFIDAEHALDPVYARNIGVDIDNLYISQPDCG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ +VRSGAVDI+V+DSVAAL P+AEI+GDMG+S  G+QARLMSQALRKLT+ I
Sbjct: 124 EQALEITETMVRSGAVDIVVVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKLTAVI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S CI++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+RR  S+K    I GN  
Sbjct: 184 SKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRRTESLKQGGEIVGNHV 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++ EFDIM+G+GIS  G+++DL V A IV+KSGAW++++G ++GQGR
Sbjct: 244 RVKVVKNKIAPPFREAEFDIMFGQGISREGDVLDLAVNAGIVNKSGAWYAYEGDKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           EN+K ++ EN    + +E+ +R
Sbjct: 304 ENAKTYIHENPAFFDMLEAKVR 325


>gi|229824701|ref|ZP_04450770.1| hypothetical protein GCWU000182_00049 [Abiotrophia defectiva ATCC
           49176]
 gi|229791030|gb|EEP27144.1| hypothetical protein GCWU000182_00049 [Abiotrophia defectiva ATCC
           49176]
          Length = 369

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 211/354 (59%), Positives = 282/354 (79%), Gaps = 2/354 (0%)

Query: 5   KEMNI-VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           K MN+  DK KALEAA++QI++ +GKG+IM+LGS G     +EVV +G L LD+ALG+GG
Sbjct: 8   KIMNVDNDKRKALEAAIAQIEKDFGKGSIMKLGS-GMDKMNVEVVPTGCLSLDLALGLGG 66

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            PKGRI+E+YGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YA+ +GV++  L 
Sbjct: 67  IPKGRIIEVYGPESSGKTTVALHMVAEVQKAGGIAGFIDAEHALDPVYAKAIGVNIDELY 126

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           ISQPD+GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+GDMG+S  G+QARLMSQAL
Sbjct: 127 ISQPDSGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQAL 186

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLTS IS++ CI+VFINQ+R KIGVMFG+PETTTGG ALKFY+S+R+D+R+  +IK   
Sbjct: 187 RKLTSVISKTNCIVVFINQLREKIGVMFGNPETTTGGRALKFYASIRMDVRKADAIKQGG 246

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+T++KVVKNK+A PFK+ +FDIM+G+GIS  G+++D+ V  +IV KSGAWFS+ G
Sbjct: 247 DVVGNRTKIKVVKNKIAPPFKEAQFDIMFGQGISRTGDVLDIAVDDNIVVKSGAWFSYNG 306

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           +++GQGREN KI+L  N E+ + IE+ +R+     A  +  E  +  +DD  KD
Sbjct: 307 EKIGQGRENVKIYLDSNPEVFKEIEAKVRETHAKKASDVSSEEPVLEEDDEQKD 360


>gi|169630143|ref|YP_001703792.1| RecA protein [Mycobacterium abscessus ATCC 19977]
 gi|226723635|sp|B1MD17|RECA_MYCA9 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|42416881|gb|AAS16322.1| RecA [Mycobacterium abscessus]
 gi|50897989|gb|AAT86004.1| RecA [Mycobacterium massiliense]
 gi|65306695|gb|AAY41900.1| RecA [Mycobacterium bolletii]
 gi|169242110|emb|CAM63138.1| RecA protein [Mycobacterium abscessus]
          Length = 346

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/329 (62%), Positives = 271/329 (82%), Gaps = 2/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE AL+QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 6   DREKALELALAQIDKSFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLVRSGAIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD     GN+T
Sbjct: 184 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG+
Sbjct: 244 RVKVVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           EN++ FL EN+++A  IE  +++  G+ A
Sbjct: 304 ENARNFLLENVDVANEIEKKIKEKLGIGA 332


>gi|78047329|ref|YP_363504.1| recombinase A [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325927201|ref|ZP_08188462.1| RecA protein [Xanthomonas perforans 91-118]
 gi|123771392|sp|Q3BUQ9|RECA_XANC5 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|78035759|emb|CAJ23450.1| RecA protein [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325542429|gb|EGD13910.1| RecA protein [Xanthomonas perforans 91-118]
          Length = 344

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 219/325 (67%), Positives = 277/325 (85%), Gaps = 4/325 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AALSQI++ +GKG++M++G +  + E +EV+ +GSL LDIALGIGG PKGR+V
Sbjct: 4   NKKRALSAALSQIEKQFGKGSVMRMGDR--VIEAVEVIPTGSLMLDIALGIGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAQCQKNGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VDI+V+DSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSGSVDIVVVDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  ++VFINQ+RMKIGVM    SPE TTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 182 KRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELID+GV+A +VDK+GAW+S+  +R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVDKAGAWYSYGDERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333
           G++N++ +LR+N ++A  +E+ LR+
Sbjct: 302 GKDNARTYLRDNPQVATRLEAELRE 326


>gi|212639361|ref|YP_002315881.1| RecA/RadA recombinase (multifunctional SOS repair regulator)
           [Anoxybacillus flavithermus WK1]
 gi|212560841|gb|ACJ33896.1| RecA/RadA recombinase (multifunctional SOS repair regulator)
           [Anoxybacillus flavithermus WK1]
          Length = 391

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 213/335 (63%), Positives = 270/335 (80%), Gaps = 2/335 (0%)

Query: 3   YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
           Y+  +++ D+  ALE AL QI++ +GKG+IM+LG Q      I  VSSGSL LDIALG+G
Sbjct: 41  YKGGVSLNDRQAALEQALKQIEKQFGKGSIMKLGEQTD--RQISTVSSGSLALDIALGVG 98

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G+P+GRI+EIYGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD +YA KLGV++  L
Sbjct: 99  GYPRGRIIEIYGPESSGKTTVALHAIAEVQKQGGQAAFIDAEHALDPVYAEKLGVNIDEL 158

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           L+SQPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEIEG+MG++  G+QARLMSQA
Sbjct: 159 LLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDAHVGLQARLMSQA 218

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           LRKL+ +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRL++RR   IK  
Sbjct: 219 LRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYASVRLEVRRAEQIKQG 278

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           + + GN+T++KVVKNK+A PFK  + DIMYGEGIS  GE+ID+G +  I+ KSGAW+S+K
Sbjct: 279 NDMVGNKTKIKVVKNKVAPPFKTADVDIMYGEGISKEGEIIDMGAELDIIQKSGAWYSYK 338

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
            +RLGQGREN+K FL+EN  I E I   +RQ+ G+
Sbjct: 339 DERLGQGRENAKQFLKENPHIMEEIAREIRQHYGI 373


>gi|308237911|emb|CBK52102.1| RecA protein [Acidithiobacillus ferrooxidans]
          Length = 280

 Score =  442 bits (1136), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 206/280 (73%), Positives = 247/280 (88%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLD+ALG+GG P+GR+VEIYGPESSGKTTL LH IA  Q  GGT AF+DAEHALD
Sbjct: 1   STGSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLTLHAIASCQAAGGTAAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
             YA KLGVDL+NLLISQPDTGEQALEI DMLVRSGAVD+IVIDSVAALTP+AEIEGDMG
Sbjct: 61  PGYAHKLGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGDMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRKLT++ISR+  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+S
Sbjct: 121 DSHVGLQARLMSQALRKLTANISRTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           VRLDIRR+G+IK  D + GN TRVKVVKNK+A PF++ EF I YGEGIS   EL+DLGVK
Sbjct: 181 VRLDIRRIGAIKKSDEVVGNDTRVKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVK 240

Query: 289 ASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
             IV+KSGAW+S++G+R+GQG++N++ +L+E+ E+A NIE
Sbjct: 241 FDIVEKSGAWYSYQGERIGQGKDNARQYLKEHPELAANIE 280


>gi|147673530|ref|YP_001216043.1| recombinase A [Vibrio cholerae O395]
 gi|153802547|ref|ZP_01957133.1| recA protein [Vibrio cholerae MZO-3]
 gi|262169853|ref|ZP_06037543.1| RecA protein [Vibrio cholerae RC27]
 gi|172047730|sp|A5F9B5|RECA_VIBC3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|124121910|gb|EAY40653.1| recA protein [Vibrio cholerae MZO-3]
 gi|146315413|gb|ABQ19952.1| recA protein [Vibrio cholerae O395]
 gi|262021587|gb|EEY40298.1| RecA protein [Vibrio cholerae RC27]
          Length = 354

 Score =  442 bits (1136), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 206/323 (63%), Positives = 268/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTG
Sbjct: 62  EIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN EIA+ ++  LR+
Sbjct: 302 ANACKYLKENPEIAKTLDKKLRE 324


>gi|238917051|ref|YP_002930568.1| Ca2+-transporting ATPase [Eubacterium eligens ATCC 27750]
 gi|238872411|gb|ACR72121.1| Ca2+-transporting ATPase [Eubacterium eligens ATCC 27750]
          Length = 356

 Score =  442 bits (1136), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 202/328 (61%), Positives = 271/328 (82%), Gaps = 1/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+AA+S I++ +GKG++M+LG   +    +E + +GSL LDIALGIGG PKGR+V
Sbjct: 5   DKMKALDAAISNIEKQFGKGSVMKLGESTANLN-VECIPTGSLSLDIALGIGGVPKGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YA+ +GVD+ NL ISQPD+G
Sbjct: 64  EIYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQPDSG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+GDMG+S  G+QARLMSQALRKLT  +
Sbjct: 124 EQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKLTPVV 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++ C+++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+R++ ++K    + GN+T
Sbjct: 184 SKNNCVVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRKIETLKQNGEVIGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PF++ EFDI++G+GIS  G+L+DL   A I+ KSGAWFS++G ++GQGR
Sbjct: 244 RVKIVKNKVAPPFREAEFDILFGKGISTEGDLVDLASNAGIIQKSGAWFSYEGNKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338
           EN+K FL +N EI E ++  +R++ G+V
Sbjct: 304 ENAKQFLLDNPEIREEVDRRVREHYGIV 331


>gi|305665727|ref|YP_003862014.1| recombinase A [Maribacter sp. HTCC2170]
 gi|88710486|gb|EAR02718.1| recombinase A [Maribacter sp. HTCC2170]
          Length = 354

 Score =  442 bits (1136), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/323 (64%), Positives = 264/323 (81%), Gaps = 3/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+  L ++ + YGKGA+M++G   S+ E +EV+ SGSLGLDIALG+GG+P+GR++E
Sbjct: 28  KLKALKLTLDKLDKTYGKGAVMKMGD--SVVEDVEVIPSGSLGLDIALGVGGYPRGRVIE 85

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA++QK GG  AF+DAEHA D  YA KLG+D+ NL+ISQPD GE
Sbjct: 86  IYGPESSGKTTLTLHAIAEAQKNGGIAAFIDAEHAFDRFYAEKLGIDIDNLIISQPDNGE 145

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RSGA+DI+V+DSVAALTP++EIEG+MG+S  G+ ARLMSQALRKLT SIS
Sbjct: 146 QALEIADNLIRSGAIDIVVVDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTGSIS 205

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQT 250
           ++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IKD D ++ GN+T
Sbjct: 206 KTHCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKDTDGAVRGNKT 265

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+  EFDIMYGEGIS  GE+IDLGV+  I+ KSG+WFS+   +LGQGR
Sbjct: 266 RVKVVKNKVAPPFRLAEFDIMYGEGISKVGEIIDLGVEYEIIKKSGSWFSYGDTKLGQGR 325

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           +  K  L +N E+ E ++  +R+
Sbjct: 326 DAVKALLNDNPELYEELDVKIRE 348


>gi|157326961|gb|ABV44593.1| RecA [Burkholderia cenocepacia]
          Length = 287

 Score =  442 bits (1136), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 206/287 (71%), Positives = 253/287 (88%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           LGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA
Sbjct: 1   LGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLP
Sbjct: 61  SKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLP 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLD
Sbjct: 121 GLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLD 180

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           IRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IV
Sbjct: 181 IRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIV 240

Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           DK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ +R++ G+V+
Sbjct: 241 DKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIRESLGVVS 287


>gi|262164030|ref|ZP_06031769.1| RecA protein [Vibrio mimicus VM223]
 gi|262027558|gb|EEY46224.1| RecA protein [Vibrio mimicus VM223]
          Length = 354

 Score =  442 bits (1136), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 206/323 (63%), Positives = 268/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTG
Sbjct: 62  EIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN EIA+ ++  LR+
Sbjct: 302 ANACKYLKENPEIAKTLDKKLRE 324


>gi|163786978|ref|ZP_02181425.1| DNA recombination protein [Flavobacteriales bacterium ALC-1]
 gi|159876866|gb|EDP70923.1| DNA recombination protein [Flavobacteriales bacterium ALC-1]
          Length = 334

 Score =  442 bits (1136), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 212/331 (64%), Positives = 267/331 (80%), Gaps = 6/331 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+  L ++ + YGKG +M++  Q    E ++ +SSGSLGLDIALG+GG+P+GR++E
Sbjct: 8   KLKALKLTLDKLDKAYGKGTVMKMSDQA--IEDVDAISSGSLGLDIALGVGGYPRGRVIE 65

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA++QK GG  AF+DAEHA D  YA KLGVDL+NL+ISQPD GE
Sbjct: 66  IYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAEHAFDRFYAEKLGVDLENLIISQPDNGE 125

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSGA+DIIVIDSVAALTP++EIEG+MG+S  G+ ARLMSQALRKLT+SIS
Sbjct: 126 QALEIADNLVRSGAIDIIVIDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTASIS 185

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-ITGNQT 250
           ++ C +VFINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IKD +S + GN+T
Sbjct: 186 KTNCTMVFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKDSNSNVMGNKT 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+  EFDIMYGEGIS  GE++DL V+  IV KSG+WFS++  +LGQGR
Sbjct: 246 RVKVVKNKVAPPFRLAEFDIMYGEGISKVGEVLDLAVEHDIVKKSGSWFSYQDTKLGQGR 305

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           +  K  +++N ++ + +E  +R    L+ DS
Sbjct: 306 DAVKALIKDNPDLMDELEEKVR---ALINDS 333


>gi|313888267|ref|ZP_07821938.1| RecA protein [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845670|gb|EFR33060.1| RecA protein [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 353

 Score =  442 bits (1136), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 216/337 (64%), Positives = 273/337 (81%), Gaps = 3/337 (0%)

Query: 5   KEMNIV-DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           KE N+  +K +AL   +S+I++ YG+G++M LG    +   IE + +GSL LDIALGIGG
Sbjct: 2   KESNLSKEKQEALHNVISKIEKQYGEGSVMILGEDVKL--DIESIPTGSLALDIALGIGG 59

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            PKGRI+EIYGPESSGKTTLALH +A++QK GGT AFVDAEHALD+ YA+ LGVD++NL+
Sbjct: 60  IPKGRIIEIYGPESSGKTTLALHMLAEAQKIGGTGAFVDAEHALDAGYAKNLGVDVENLI 119

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           ISQPDTGEQALEIT+ LVRS AVD+I+IDSVAAL P+AEI+GDMG +  G+QARLMSQAL
Sbjct: 120 ISQPDTGEQALEITEALVRSNAVDLIIIDSVAALVPKAEIDGDMGAAQIGLQARLMSQAL 179

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT +I++SKC +VFINQ+R K+G+MFG+PETTTGG ALKFYSSVRLDIR+  +IK  D
Sbjct: 180 RKLTGAINKSKCTVVFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDIRKSENIKKGD 239

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            I GN+ RVKVVKNK+A PF+Q EFDIMYG+GIS  G ++D+  +A I+ K+GAW+S+  
Sbjct: 240 EIIGNRVRVKVVKNKIAPPFRQAEFDIMYGKGISSVGNILDVAAEADIIKKAGAWYSYGE 299

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           +RLGQGRENSK FL EN E+ + IE  +R +  L+ D
Sbjct: 300 ERLGQGRENSKDFLEENPELLKEIEHKVRVHYNLIED 336


>gi|308237905|emb|CBK52099.1| RecA protein [Acidithiobacillus ferrooxidans]
          Length = 281

 Score =  442 bits (1136), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 206/280 (73%), Positives = 247/280 (88%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLD+ALG+GG P+GR+VEIYGPESSGKTTL LH IA  Q  GGT AF+DAEHALD
Sbjct: 2   STGSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLTLHAIASCQAAGGTAAFIDAEHALD 61

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
             YA KLGVDL+NLLISQPDTGEQALEI DMLVRSGAVD+IVIDSVAALTP+AEIEGDMG
Sbjct: 62  PGYAHKLGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGDMG 121

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRKLT++ISR+  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+S
Sbjct: 122 DSHVGLQARLMSQALRKLTANISRTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYAS 181

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           VRLDIRR+G+IK  D + GN TRVKVVKNK+A PF++ EF I YGEGIS   EL+DLGVK
Sbjct: 182 VRLDIRRIGAIKKSDEVVGNDTRVKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVK 241

Query: 289 ASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
             IV+KSGAW+S++G+R+GQG++N++ +L+E+ E+A NIE
Sbjct: 242 FDIVEKSGAWYSYQGERIGQGKDNARQYLKEHPELAANIE 281


>gi|289705928|ref|ZP_06502304.1| RecA protein [Micrococcus luteus SK58]
 gi|289557336|gb|EFD50651.1| RecA protein [Micrococcus luteus SK58]
          Length = 354

 Score =  442 bits (1136), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/330 (63%), Positives = 267/330 (80%), Gaps = 2/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALEAAL+QI + +GKG++M+LG Q      +EV+ +GS+ +D+ALGIGG P+GR+V
Sbjct: 6   DREKALEAALAQIDKQFGKGSVMRLGDQTQT--PVEVIPTGSVAMDVALGIGGLPRGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH +A +Q+ GG  AF+DAEHALD +YARKLGVD   LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLALHAVANAQRNGGIAAFIDAEHALDPVYARKLGVDTDALLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLV SG +DI+VIDSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T  +
Sbjct: 124 EQALEIMDMLVSSGTLDIVVIDSVAALTPRAEIEGEMGDSHVGLQARLMSQALRKITGRL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++K   +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+  +  GN+T
Sbjct: 184 HQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKEAGNPVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNKMA PFKQ EFDI+YG GIS  G LID+GV+  IV KSGAWF++ G +LGQG+
Sbjct: 244 RVKIVKNKMAPPFKQAEFDILYGVGISREGGLIDMGVEEGIVKKSGAWFTYDGDQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           EN++ FL++N ++A+ IE  +    G+  D
Sbjct: 304 ENARRFLKDNPDLAQEIEERILTKLGIGVD 333


>gi|229512812|ref|ZP_04402279.1| RecA protein [Vibrio cholerae TMA 21]
 gi|229350061|gb|EEO15014.1| RecA protein [Vibrio cholerae TMA 21]
          Length = 354

 Score =  442 bits (1136), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 206/323 (63%), Positives = 268/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTG
Sbjct: 62  EIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN EIA+ ++  LR+
Sbjct: 302 ANACKYLKENPEIAKTLDKKLRE 324


>gi|288802767|ref|ZP_06408205.1| protein RecA [Prevotella melaninogenica D18]
 gi|288334917|gb|EFC73354.1| protein RecA [Prevotella melaninogenica D18]
          Length = 341

 Score =  442 bits (1136), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 203/321 (63%), Positives = 266/321 (82%), Gaps = 2/321 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+AA+S+I++ +GKG+IM++G +    E +EV+ +GS+ LD ALG+GG+P+GRI+E
Sbjct: 15  KLKALQAAMSKIEKDFGKGSIMRMGDEQ--IEQVEVIPTGSVALDTALGVGGYPRGRIIE 72

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL +SQPD GE
Sbjct: 73  IYGPESSGKTTLAIHAIAEAQKQGGIAAFIDAEHAFDRFYAEKLGVDVDNLWVSQPDNGE 132

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RS A+DI+V+DSVAALTP+ EIEGDMG+S  G+QARLMSQALRKLTS+I+
Sbjct: 133 QALEIADQLIRSSAIDILVVDSVAALTPKKEIEGDMGDSAVGLQARLMSQALRKLTSTIA 192

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIG+MFG+PETTTGGNALKFYSSVRLDIRR+ SIKD D + GNQ R
Sbjct: 193 KTNTCCIFINQLREKIGMMFGNPETTTGGNALKFYSSVRLDIRRITSIKDGDQVIGNQVR 252

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNK+A PF++ EF+I +GEGIS  GE++DLGV+  I+ KSG+WFS+ G +L QGR+
Sbjct: 253 VKIVKNKVAPPFRKAEFEITFGEGISKIGEIVDLGVQYGIIQKSGSWFSYNGTKLAQGRD 312

Query: 312 NSKIFLRENIEIAENIESLLR 332
            +K  +++N E+AE +E L++
Sbjct: 313 ATKAMIKDNPELAEELEGLIK 333


>gi|326319349|ref|YP_004237021.1| recA protein [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323376185|gb|ADX48454.1| recA protein [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 354

 Score =  441 bits (1135), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/315 (67%), Positives = 271/315 (86%), Gaps = 1/315 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG IM+LG +G   E I+VVS+GSLGLD+ALG+GG P+GR++EIYGPESSGKTT
Sbjct: 25  IEKQFGKGTIMRLG-EGEAIEDIQVVSTGSLGLDVALGVGGLPRGRVIEIYGPESSGKTT 83

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK  GTCAFVDAEHALD  YA+KLGV + +LLISQPDTGEQALEI D LVR
Sbjct: 84  LTLQVIAEMQKQNGTCAFVDAEHALDIQYAQKLGVHVPDLLISQPDTGEQALEIVDSLVR 143

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AEIEG+MG++LPG+QARLMSQALRKLT++I ++ C+++FINQ
Sbjct: 144 SGAVDLIVVDSVAALTPKAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQ 203

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK  D   GN+T+VKVVKNK++ P
Sbjct: 204 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPP 263

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FK  EFDI++GEGIS  GE+ID+GV A I++KSGAW+++ G+++GQGR+N++ FLREN +
Sbjct: 264 FKTAEFDILFGEGISREGEIIDMGVNARIIEKSGAWYAYNGEKIGQGRDNAREFLRENAD 323

Query: 323 IAENIESLLRQNAGL 337
           +A  IE+ +R   G+
Sbjct: 324 LAREIENKVRDGLGV 338


>gi|121596285|ref|YP_988181.1| recombination protein RecA [Acidovorax sp. JS42]
 gi|222112514|ref|YP_002554778.1| reca protein [Acidovorax ebreus TPSY]
 gi|120608365|gb|ABM44105.1| recA protein [Acidovorax sp. JS42]
 gi|221731958|gb|ACM34778.1| recA protein [Acidovorax ebreus TPSY]
          Length = 373

 Score =  441 bits (1135), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 216/315 (68%), Positives = 271/315 (86%), Gaps = 1/315 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG IM+LG +G   E I+VVS+GSLGLDIALG+GG P+GR++EIYGPESSGKTT
Sbjct: 27  IEKQFGKGTIMRLG-EGEAIEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTT 85

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GG CAFVDAEHALD  YA KLGV L +LLISQPDTGEQALEI D LVR
Sbjct: 86  LTLQVIAEMQKQGGQCAFVDAEHALDVQYASKLGVQLTDLLISQPDTGEQALEIVDSLVR 145

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AEIEG+MG++LPG+QARLMSQALRKLT++I ++ C+++FINQ
Sbjct: 146 SGAVDLIVVDSVAALTPKAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQ 205

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK  D   GN+T+VKVVKNK++ P
Sbjct: 206 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPP 265

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FK  EFDI++GEGIS  GE+ID+GV A I++KSGAW+++ G+++GQGR+N++ FLREN  
Sbjct: 266 FKTAEFDILFGEGISREGEIIDMGVNARILEKSGAWYAYNGEKIGQGRDNAREFLRENPG 325

Query: 323 IAENIESLLRQNAGL 337
           +A  IE+ +R++ G+
Sbjct: 326 LAVEIENKVRESLGI 340


>gi|296171749|ref|ZP_06852908.1| recombination protein A [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295893978|gb|EFG73743.1| recombination protein A [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 350

 Score =  441 bits (1135), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/344 (60%), Positives = 275/344 (79%), Gaps = 10/344 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 6   DREKALELAMAQIEKSYGKGSVMRLGDE--MRQPISVIPTGSIALDVALGIGGLPRGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGALDILVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+T
Sbjct: 184 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG GIS  G LID+GV+   + KSG+WF+++G++LGQG+
Sbjct: 244 RVKVVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA--------DSLLQEP 346
           EN++ FL EN E+A  IE  +++  G+ A        DS+L  P
Sbjct: 304 ENARTFLMENDEVANEIEKKIKEKLGIGAVVTDGLSDDSVLPAP 347


>gi|117928699|ref|YP_873250.1| recA protein [Acidothermus cellulolyticus 11B]
 gi|166199593|sp|A0LV04|RECA_ACIC1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|117649162|gb|ABK53264.1| recA protein [Acidothermus cellulolyticus 11B]
          Length = 345

 Score =  441 bits (1135), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 206/327 (62%), Positives = 267/327 (81%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI+R +GKG++M+LG +      I+V+ +GS+ LD+ALGIGG P+GRIV
Sbjct: 6   DREKALEHAIAQIERAHGKGSLMRLGDEAR--APIDVIPTGSIALDVALGIGGLPRGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH +A +Q+ GG  AF+DAEHALD  YA+KLGVD  NLL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLALHAVANAQRAGGIAAFIDAEHALDPEYAKKLGVDTDNLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L+RSGA+D++VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADTLIRSGAIDVVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S S    +FINQ+R K+GV FGSPETTTGG ALKFY+S+RLD+RR+ +IK+     GN+T
Sbjct: 184 SHSGTTAIFINQLREKVGVFFGSPETTTGGKALKFYASIRLDVRRIDTIKEGQEAIGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK ASPF+Q EFDI+Y  GIS  G LID+GV+  I+ KSGAW++++G +LGQG+
Sbjct: 244 RVKVVKNKCASPFRQAEFDILYNVGISREGSLIDMGVEHGIIRKSGAWYTYEGDQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN++ FLREN ++A+ IE  +++  G+
Sbjct: 304 ENARNFLRENPDLADEIEKKIKEKLGI 330


>gi|226312983|ref|YP_002772877.1| RecA protein [Brevibacillus brevis NBRC 100599]
 gi|254790423|sp|C0ZF14|RECA_BREBN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226095931|dbj|BAH44373.1| RecA protein [Brevibacillus brevis NBRC 100599]
          Length = 352

 Score =  441 bits (1135), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 216/348 (62%), Positives = 275/348 (79%), Gaps = 5/348 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  ALE+AL QI++ +GKG+IM+LG   +I   I   SSG+L LDIALG+GGFP+GRIV
Sbjct: 3   DRRAALESALRQIEKQFGKGSIMKLGEVSNI--QISTASSGALALDIALGVGGFPRGRIV 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ Q+ GG  AF+DAEHALD +YA KLGV++  LL+SQPDTG
Sbjct: 61  EIYGPESSGKTTVALHAIAEVQRQGGQAAFIDAEHALDPVYAAKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDIIV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R+  SIK  + I G++T
Sbjct: 181 NKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRKAESIKVGNDILGSKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYGEGIS  G ++D+G +  +V KSGAW+SF  +RLGQGR
Sbjct: 241 KIKVVKNKVAPPFKVAEVDIMYGEGISREGSILDIGSEIDVVQKSGAWYSFNEERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           ENSK+FL+EN  IA  IE+ +R+   L   S+   P    + D ++D+
Sbjct: 301 ENSKVFLKENPHIASQIETKVREYFSLNPSSV---PEAEAEHDPEQDE 345


>gi|307261625|ref|ZP_07543293.1| hypothetical protein appser12_11860 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306868748|gb|EFN00557.1| hypothetical protein appser12_11860 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 376

 Score =  441 bits (1135), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/329 (65%), Positives = 272/329 (82%), Gaps = 2/329 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K+++   K KAL AAL+QI++ +GKG+IM+LG   ++   IE VS+GS+GLD ALGIGG 
Sbjct: 15  KQIDPEQKEKALAAALAQIEKQFGKGSIMRLGDTQAL--DIEAVSTGSIGLDAALGIGGL 72

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P GRIVEIYGPESSGKTTL L  IAQ+QK+G TCAF+DAE+ALD +YARKLGVD   LLI
Sbjct: 73  PMGRIVEIYGPESSGKTTLTLSVIAQAQKSGKTCAFIDAENALDPVYARKLGVDTDALLI 132

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALR
Sbjct: 133 SQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALR 192

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT++I  + C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G +KD D 
Sbjct: 193 KLTANIKATNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRSGVVKDGDE 252

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + G++T+VK+VKNK+A PF++V+FDIMYGEGIS   EL+ L      + K+GAWFS++G 
Sbjct: 253 VVGSETKVKIVKNKVAPPFREVQFDIMYGEGISRMNELLILAEANGFIQKAGAWFSYEGT 312

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQ 333
           ++GQG+ N+  +L+EN EIAE IE  +R+
Sbjct: 313 KIGQGKNNAIKWLKENPEIAEKIEQDIRE 341


>gi|61215058|sp|Q6XZ07|RECA_VIBNA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|37781765|gb|AAO18662.1| recombinase A [Vibrio natriegens]
          Length = 348

 Score =  441 bits (1135), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 203/323 (62%), Positives = 267/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FI Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T
Sbjct: 182 KQSNCMCIFIKQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GEL+DLGVK  +V+K+GAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKAGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +LRE+ E+A+ I+  LR+
Sbjct: 302 ANACNYLREHTEVAQTIDKKLRE 324


>gi|325279276|ref|YP_004251818.1| Protein recA [Odoribacter splanchnicus DSM 20712]
 gi|324311085|gb|ADY31638.1| Protein recA [Odoribacter splanchnicus DSM 20712]
          Length = 350

 Score =  441 bits (1135), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 211/324 (65%), Positives = 265/324 (81%), Gaps = 3/324 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           KE N+ +K KAL+  L +I++ +GKG+IM+LG      E I V+ SGS+ LD ALG+GG+
Sbjct: 4   KETNL-EKLKALQLTLDKIEKNFGKGSIMKLGDNQ--VENIPVIPSGSIALDKALGVGGY 60

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGR++EIYGPESSGKTTLA+H IA++QK GG  A +DAEHA D  YA KLGVD++NL I
Sbjct: 61  PKGRVIEIYGPESSGKTTLAIHAIAEAQKQGGIAAIIDAEHAFDRSYAEKLGVDVENLFI 120

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI D L+RS A+DIIVIDSVAALTP+AEIEG+MG+S+ G+QARLMSQALR
Sbjct: 121 SQPDNGEQALEIADQLIRSAAIDIIVIDSVAALTPKAEIEGNMGDSVMGLQARLMSQALR 180

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLTS+IS++    +FINQ+R KIGVMFG+PETTTGGNALKFYSSVRLDIR++G IKD + 
Sbjct: 181 KLTSTISKTNTCCIFINQLRDKIGVMFGNPETTTGGNALKFYSSVRLDIRKIGPIKDGEE 240

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           I GN TRVKVVKNK+A PF++ EFDIMYGEGIS  GE++DLGV+ +++ KSG+WFS+   
Sbjct: 241 ILGNHTRVKVVKNKVAPPFRKAEFDIMYGEGISLSGEIVDLGVECNVIKKSGSWFSYGEN 300

Query: 305 RLGQGRENSKIFLRENIEIAENIE 328
           +LGQGRE  K  + +N E+AE ++
Sbjct: 301 KLGQGRETVKQLIMDNPELAEELK 324


>gi|317497517|ref|ZP_07955836.1| recA bacterial DNA recombination protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895200|gb|EFV17363.1| recA bacterial DNA recombination protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 351

 Score =  441 bits (1135), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/343 (60%), Positives = 274/343 (79%), Gaps = 6/343 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AAL +I++ YGKG++M+LG   +    IEV  +GS+ LDIALG+GG PKGRI+
Sbjct: 5   EKLKALDAALVKIEKDYGKGSVMKLGEYQA-DRTIEVTPTGSISLDIALGVGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YA+ +GVD+ NL ISQPDTG
Sbjct: 64  EIYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEIT+ +VRSGA+DII++DSVAAL P+AEI+GDMG+S  G+QARLMSQALRKLT  +
Sbjct: 124 EQGLEITETMVRSGAIDIIIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKLTGVV 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+  C ++FINQ+R K+GVMFG+PETTTGG ALKFYSS+RLD+RR  ++K    + GN+T
Sbjct: 184 SKFNCTVIFINQLREKVGVMFGNPETTTGGRALKFYSSIRLDVRRTETLKQAGEMIGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PFKQ EFDIM+G+GIS +G+++DL   A I+ KSGAW+++ G+++GQGR
Sbjct: 244 RIKVVKNKVAPPFKQAEFDIMFGKGISKYGDILDLAADADIIHKSGAWYAYNGEKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           ENSK +L ++ +IAE +E  +R + G     LL+E A N  +D
Sbjct: 304 ENSKKYLEDHPDIAETVEHAIRVHYG-----LLEEDAENANND 341


>gi|260767194|ref|ZP_05876136.1| RecA protein [Vibrio furnissii CIP 102972]
 gi|260617802|gb|EEX42979.1| RecA protein [Vibrio furnissii CIP 102972]
 gi|315181175|gb|ADT88089.1| recombinase A [Vibrio furnissii NCTC 11218]
          Length = 350

 Score =  441 bits (1135), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/323 (64%), Positives = 267/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  I+ +Q+ G TCAF+DAEHALD +YAR+LGV +  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLELISAAQREGKTCAFIDAEHALDPVYARRLGVKIDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GELI+LGVK  +V+K+GAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIELGVKHKLVEKAGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +LREN E+A+ I+  LR+
Sbjct: 302 ANACKYLRENPEVAKFIDGKLRE 324


>gi|120613271|ref|YP_972949.1| recombination protein RecA [Acidovorax citrulli AAC00-1]
 gi|120591735|gb|ABM35175.1| recA protein [Acidovorax citrulli AAC00-1]
          Length = 354

 Score =  441 bits (1135), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/315 (67%), Positives = 271/315 (86%), Gaps = 1/315 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG IM+LG +G   E I+VVS+GSLGLD+ALG+GG P+GR++EIYGPESSGKTT
Sbjct: 25  IEKQFGKGTIMRLG-EGEAIEDIQVVSTGSLGLDVALGVGGLPRGRVIEIYGPESSGKTT 83

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK  GTCAFVDAEHALD  YA+KLGV + +LLISQPDTGEQALEI D LVR
Sbjct: 84  LTLQVIAEMQKQNGTCAFVDAEHALDIQYAQKLGVHVPDLLISQPDTGEQALEIVDSLVR 143

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AEIEG+MG++LPG+QARLMSQALRKLT++I ++ C+++FINQ
Sbjct: 144 SGAVDLIVVDSVAALTPKAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQ 203

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK  D   GN+T+VKVVKNK++ P
Sbjct: 204 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPP 263

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FK  EFDI++GEGIS  GE+ID+GV A I++KSGAW+++ G+++GQGR+N++ FLREN +
Sbjct: 264 FKTAEFDILFGEGISREGEIIDMGVNARIIEKSGAWYAYNGEKIGQGRDNAREFLRENAD 323

Query: 323 IAENIESLLRQNAGL 337
           +A  IE+ +R   G+
Sbjct: 324 LAREIENKVRDGLGV 338


>gi|42416889|gb|AAS16326.1| RecA [Mycobacterium septicum]
          Length = 351

 Score =  441 bits (1135), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/329 (62%), Positives = 270/329 (82%), Gaps = 2/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 7   DREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRVV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R+KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+T
Sbjct: 185 NNSGTTAIFINQLRVKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG GIS  G LID+GV+   + KSG+WF+++G++LGQG+
Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGHGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           EN++ FL ENI++A  IE  +++  G+ A
Sbjct: 305 ENARKFLLENIDVANEIEKKIKEKLGIGA 333


>gi|167766689|ref|ZP_02438742.1| hypothetical protein CLOSS21_01195 [Clostridium sp. SS2/1]
 gi|167711626|gb|EDS22205.1| hypothetical protein CLOSS21_01195 [Clostridium sp. SS2/1]
 gi|291558369|emb|CBL37169.1| protein RecA [butyrate-producing bacterium SSC/2]
          Length = 351

 Score =  441 bits (1134), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/343 (60%), Positives = 274/343 (79%), Gaps = 6/343 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AAL +I++ YGKG++M+LG   +    IEV  +GS+ LDIALG+GG PKGRI+
Sbjct: 5   EKLKALDAALVKIEKDYGKGSVMKLGEYQA-DRTIEVTPTGSISLDIALGVGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YA+ +GVD+ NL ISQPDTG
Sbjct: 64  EIYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEIT+ +VRSGA+DII++DSVAAL P+AEI+GDMG+S  G+QARLMSQALRKLT  +
Sbjct: 124 EQGLEITETMVRSGAIDIIIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKLTGVV 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+  C ++FINQ+R K+GVMFG+PETTTGG ALKFYSS+RLD+RR  ++K    + GN+T
Sbjct: 184 SKFNCTVIFINQLREKVGVMFGNPETTTGGRALKFYSSIRLDVRRTETLKQAGEMIGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PFKQ EFDIM+G+GIS +G+++DL   A I+ KSGAW+++ G+++GQGR
Sbjct: 244 RIKVVKNKVAPPFKQAEFDIMFGKGISKYGDILDLAADADIIHKSGAWYAYNGEKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           ENSK +L ++ +IAE +E  +R + G     LL+E A N  +D
Sbjct: 304 ENSKKYLEDHPDIAETVEHAIRVHYG-----LLEEDAENANND 341


>gi|56963964|ref|YP_175695.1| recombinase A [Bacillus clausii KSM-K16]
 gi|59798129|sp|Q5WFX1|RECA_BACSK RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|56910207|dbj|BAD64734.1| recombination protein A [Bacillus clausii KSM-K16]
          Length = 350

 Score =  441 bits (1134), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/327 (63%), Positives = 267/327 (81%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ +AL+ AL  I++ +GKG+IM+LG Q    + +  VSSG+L LDIALG+GG+PKGR++
Sbjct: 3   DRKQALDMALRHIEKQFGKGSIMKLGEQAE--QRVSTVSSGTLALDIALGVGGYPKGRVI 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ Q+ GG  AF+DAEHALD +YA KLGV++  LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVALHAIAEVQRNGGQAAFIDAEHALDPVYASKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQALEIAEALVRSGALDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR  ++K  + I GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKQGNEIVGNRT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYGEGIS  G ++D+  +  IV+KSGAW+S+KG RLGQGR
Sbjct: 241 KIKVVKNKVAPPFRLAEVDIMYGEGISREGSMLDIASELDIVEKSGAWYSYKGDRLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           ENSK FL+EN EI   IE L+R + GL
Sbjct: 301 ENSKQFLKENPEITAEIERLIRDHHGL 327


>gi|319942901|ref|ZP_08017184.1| recombination protein A [Lautropia mirabilis ATCC 51599]
 gi|319743443|gb|EFV95847.1| recombination protein A [Lautropia mirabilis ATCC 51599]
          Length = 367

 Score =  441 bits (1134), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/330 (66%), Positives = 272/330 (82%), Gaps = 1/330 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG++M++ + G +   IEVVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 19  QIEKQFGKGSVMRM-ADGEVAPDIEVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 77

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGTCAF+DAEHALD  YA KLGV L  LLISQPDTGEQALEI D LV
Sbjct: 78  TLTLQVIAEMQKLGGTCAFIDAEHALDVQYAAKLGVRLPELLISQPDTGEQALEICDALV 137

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG+VD++V+DSVAALTPRAEIEGDMG++LPG+QARLMSQALRKLT SI R+  +++FIN
Sbjct: 138 RSGSVDLVVVDSVAALTPRAEIEGDMGDALPGLQARLMSQALRKLTGSIQRTNTLVIFIN 197

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK  D I GN+TRVKVVKNK++ 
Sbjct: 198 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKKGDEIIGNETRVKVVKNKVSP 257

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PFK  EFDI+YGEG S  GE++DLGV    V+KSGAW+S+ G+R+GQG++N++ +LRE  
Sbjct: 258 PFKSAEFDILYGEGTSREGEILDLGVTHGFVEKSGAWYSYNGERIGQGKDNAREYLREKP 317

Query: 322 EIAENIESLLRQNAGLVADSLLQEPAINTK 351
           E+A  IE+ +R+  G+       +P ++ +
Sbjct: 318 ELALEIENRIREAVGVSTRGEAPQPVVDAE 347


>gi|229525204|ref|ZP_04414609.1| RecA protein [Vibrio cholerae bv. albensis VL426]
 gi|229338785|gb|EEO03802.1| RecA protein [Vibrio cholerae bv. albensis VL426]
          Length = 354

 Score =  441 bits (1134), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 206/323 (63%), Positives = 268/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTG
Sbjct: 62  EIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN EIA+ ++  LR+
Sbjct: 302 VNACKYLKENPEIAKTLDKKLRE 324


>gi|260773535|ref|ZP_05882451.1| RecA protein [Vibrio metschnikovii CIP 69.14]
 gi|260612674|gb|EEX37877.1| RecA protein [Vibrio metschnikovii CIP 69.14]
          Length = 349

 Score =  441 bits (1134), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/323 (64%), Positives = 267/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMLLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGV + +LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTLTLELIASAQREGKTCAFIDAEHALDPIYAQKLGVKINDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GEL+DLGVK  +++KSGAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLIEKSGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  FLRE+ E ++ I+S LR+
Sbjct: 302 ANACKFLREHPEASKAIDSKLRE 324


>gi|157164266|ref|YP_001467588.1| recombinase A [Campylobacter concisus 13826]
 gi|112801133|gb|EAT98477.1| protein RecA [Campylobacter concisus 13826]
          Length = 365

 Score =  441 bits (1134), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 213/347 (61%), Positives = 275/347 (79%), Gaps = 5/347 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KALE AL QI + +GKG +++LG +    E IE + +GSLGLD+ALGIGG PKGRI+
Sbjct: 19  DKKKALELALKQIDKAFGKGTLLRLGDKE--VEAIESIPTGSLGLDLALGIGGVPKGRII 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA++QK GG CAFVDAEHALD  YA  LGV+  NL +SQPD G
Sbjct: 77  EIYGPESSGKTTLTLHIIAEAQKAGGICAFVDAEHALDVKYASNLGVNTDNLYVSQPDFG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L RSGA+D+IV+DSVAALTP++EI+GDMG+   G+QARLMSQALRKLT  +
Sbjct: 137 EQALEIVETLARSGAIDLIVVDSVAALTPKSEIDGDMGDQHVGLQARLMSQALRKLTGIL 196

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           S+ K  ++FINQ+RMKIG+M +G+PETTTGGNALKFYSSVR+D+R++ ++K  D   GN+
Sbjct: 197 SKMKTTVIFINQIRMKIGMMGYGTPETTTGGNALKFYSSVRIDVRKIATLKQNDEPIGNR 256

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           T+ KVVKNK+A PFK  EFDIM+GEG+S  GE+ID GVK  I+DKSGAWFS+K ++LGQG
Sbjct: 257 TKAKVVKNKVAPPFKVAEFDIMFGEGVSKEGEIIDYGVKLDIIDKSGAWFSYKAEKLGQG 316

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           REN+K +L+E+ EI++ I + ++ + G+  D L+   A +  DD ++
Sbjct: 317 RENAKAYLKEHPEISDEIVAAIKGSMGI--DHLISSGAKDEDDDTNE 361


>gi|170781613|ref|YP_001709945.1| recombinase A [Clavibacter michiganensis subsp. sepedonicus]
 gi|169156181|emb|CAQ01323.1| recombinase A [Clavibacter michiganensis subsp. sepedonicus]
          Length = 405

 Score =  441 bits (1134), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 213/330 (64%), Positives = 262/330 (79%), Gaps = 2/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ K+LE AL+QI R +GKG++M+LGS       + V+ +GS+ LD+ALGIGG P+GRIV
Sbjct: 49  DREKSLETALAQIDRQFGKGSVMRLGSDERA--PVAVIPTGSVALDVALGIGGLPRGRIV 106

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTG
Sbjct: 107 EIYGPESSGKTTLTLHAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTG 166

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG++D++VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  +
Sbjct: 167 EQALEIADMLVRSGSIDLVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGL 226

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++++  ++FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+T
Sbjct: 227 NQTQTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVGNRT 286

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFKQ EFDI+YG GIS  G LID GV+  IV KSGAW+++ G +LGQG+
Sbjct: 287 RVKVVKNKMAPPFKQAEFDILYGTGISREGSLIDFGVEHEIVRKSGAWYTYDGDQLGQGK 346

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           ENS+  L  N EIA  IE  ++   GLV D
Sbjct: 347 ENSRKHLLNNPEIAAEIEQKIKVKLGLVKD 376


>gi|332172802|gb|AEE22056.1| recA protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 343

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 222/322 (68%), Positives = 273/322 (84%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K++AL AAL QI++ +GKGAIM+LG   ++   IE VS+GSL +DIALGIGG P GR+V
Sbjct: 4   NKNRALTAALGQIEKQFGKGAIMRLGDNQAM--DIEAVSTGSLTIDIALGIGGLPCGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD +YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAEAQKMGKTCAFVDAEHALDPVYAGKLGVNIDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGAVD++V+DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT +I
Sbjct: 122 EQALEICDMLVRSGAVDVVVVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD D + GN+T
Sbjct: 182 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF IMYG+GI    ELIDLGVK  +V+K+GAW+S+ G+R+GQG+
Sbjct: 242 RVKVVKNKVAPPFKQAEFQIMYGQGICKEAELIDLGVKQKLVEKAGAWYSYNGERIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N   +L+E+ E++ +IE  LR
Sbjct: 302 ANVVKYLKEHTEMSNDIEQKLR 323


>gi|147677636|ref|YP_001211851.1| RecA/RadA recombinase [Pelotomaculum thermopropionicum SI]
 gi|146273733|dbj|BAF59482.1| RecA/RadA recombinase [Pelotomaculum thermopropionicum SI]
          Length = 342

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 209/323 (64%), Positives = 269/323 (83%), Gaps = 1/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE AL QI+R +GKG+IM+LG + S    +EV+ +G+L LDIALG+GG P+GR++
Sbjct: 3   DRQKALELALMQIERQFGKGSIMKLG-EASAKLNVEVIPTGALALDIALGVGGVPRGRVI 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTT+ALH IA++QK GGT AFVDAEHALD +YA+ LGVD++NLL+SQPDTG
Sbjct: 62  EIFGPESSGKTTVALHVIAEAQKMGGTAAFVDAEHALDPVYAKNLGVDIENLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVD+IV+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKLT +I
Sbjct: 122 EQALEIAEALVRSGAVDVIVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S+  ++FINQ+R K+GV++GSPETTTGG ALKFY+S+RL++R+  +IK    I G++T
Sbjct: 182 SKSRTTVIFINQIREKVGVVYGSPETTTGGRALKFYASIRLEVRKQENIKQGTDIIGSRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ +FDIMYG GIS  G ++D+  + +IV+KSGAW+SF  +RLGQGR
Sbjct: 242 RVKVVKNKVAPPFKQADFDIMYGTGISKEGSILDMATELNIVEKSGAWYSFGEERLGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           EN K +LRE+ EI   IE  +RQ
Sbjct: 302 ENVKEYLREHPEITREIERKVRQ 324


>gi|302389774|ref|YP_003825595.1| RecA protein [Thermosediminibacter oceani DSM 16646]
 gi|302200402|gb|ADL07972.1| RecA protein [Thermosediminibacter oceani DSM 16646]
          Length = 343

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/330 (63%), Positives = 270/330 (81%), Gaps = 1/330 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           +++K KALE AL+QI+R +GKG+IM+LG   S F  +EV+ +G+L LDIALG+GG P+GR
Sbjct: 1   MMEKQKALEMALAQIERQFGKGSIMRLGEAESKF-NVEVIPTGALPLDIALGVGGVPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EI+GPESSGKTT+ALH +A++QK GGT AF+DAEHALD  YARKLGVD  NLLISQPD
Sbjct: 60  IIEIFGPESSGKTTVALHIVAEAQKAGGTAAFIDAEHALDPTYARKLGVDTDNLLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVD+IVIDSVAAL P+AE+EG+MGE+  G+QARLMSQALRKL  
Sbjct: 120 TGEQALEIAEALVRSGAVDVIVIDSVAALVPKAELEGEMGEAHVGLQARLMSQALRKLAG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           SIS+SK + +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+++R+   IKD +++ G 
Sbjct: 180 SISKSKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMEVRKTSVIKDGENVVGT 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +  VKVVKNK+A PFK  EFDIMYGEGIS  G ++D   +A I+ KSGAW+S++ +R+GQ
Sbjct: 240 RASVKVVKNKVAPPFKSAEFDIMYGEGISREGCVLDFATEAGIIQKSGAWYSYEKERIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLV 338
           GREN+K +L+E+ E+ + IE  +++   LV
Sbjct: 300 GRENAKQYLKEHPEVLKAIELKVKEKFNLV 329


>gi|288799673|ref|ZP_06405132.1| protein RecA [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332921|gb|EFC71400.1| protein RecA [Prevotella sp. oral taxon 299 str. F0039]
          Length = 343

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/323 (64%), Positives = 268/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AA+++I++ +G+GAIM++G +    E I+V+ +GS+GLD+ALG+GG+PKGRI+
Sbjct: 16  NKLKALQAAMAKIEKDFGRGAIMRMGDEN--IENIDVIPTGSIGLDLALGVGGYPKGRII 73

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGV++  L ISQPDTG
Sbjct: 74  EIYGPESSGKTTLAIHAIAEAQKAGGVAAFIDAEHAFDRFYAEKLGVNINELWISQPDTG 133

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L+RS AVDI+VIDSVAALTP+ E++GDMG++  G+QARLMSQALRKLTS+I
Sbjct: 134 EQALEIADQLIRSSAVDIVVIDSVAALTPKKELDGDMGDNNVGLQARLMSQALRKLTSTI 193

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++    +FINQ+R KIGV +G  ETTTGGNALKFYSSVRLDIRR  +IKD D   GN+T
Sbjct: 194 NKTNTTCIFINQLRDKIGVTYGPSETTTGGNALKFYSSVRLDIRRGTAIKDGDEPIGNET 253

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK+ EFDIMYGEGIS  GE+IDLGV+ +I+ KSG+WFS+K  +LGQGR
Sbjct: 254 RVKVVKNKVAPPFKKAEFDIMYGEGISKIGEIIDLGVEHNIITKSGSWFSYKESKLGQGR 313

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           + +K  L++N E+ E IE L+++
Sbjct: 314 DAAKRLLKDNPELCEEIEGLIKE 336


>gi|172057063|ref|YP_001813523.1| recA protein [Exiguobacterium sibiricum 255-15]
 gi|229892799|sp|B1YMB9|RECA_EXIS2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|171989584|gb|ACB60506.1| recA protein [Exiguobacterium sibiricum 255-15]
          Length = 347

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 209/328 (63%), Positives = 270/328 (82%), Gaps = 2/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  ALE AL QI++ +GKG+IM+LG   S  + + V+SSGS+ LDIALG GG+P+GR++
Sbjct: 3   DRKAALEMALRQIEKQFGKGSIMKLGE--SADQRVSVISSGSITLDIALGAGGYPRGRVI 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT++LH IA+ QK GG  AF+DAEHALD  YA KLGV++  LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVSLHAIAEVQKQGGQAAFIDAEHALDPAYASKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDI+V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ + 
Sbjct: 121 EQALEIAEALVRSGAVDILVVDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLSGAT 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I++FINQ+R KIGVMFG+PETT GG ALKFYSSVRL++RR  ++K+   I GN+T
Sbjct: 181 NKSKTIVIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKNGTDIVGNRT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFKQ E DIMYG+GIS FGELIDLG    IV KSGAW+S+  +RLGQGR
Sbjct: 241 KLKVVKNKIAPPFKQAEVDIMYGQGISKFGELIDLGTDLDIVQKSGAWYSYNSERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338
           EN+K ++ E+ ++A+ +E L+R++ GLV
Sbjct: 301 ENAKQYMIEHPDVADEVERLIREHHGLV 328


>gi|322515028|ref|ZP_08068037.1| recombination protein A [Actinobacillus ureae ATCC 25976]
 gi|322118979|gb|EFX91152.1| recombination protein A [Actinobacillus ureae ATCC 25976]
          Length = 376

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 216/329 (65%), Positives = 271/329 (82%), Gaps = 2/329 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K+++   K KAL AAL+QI++ +GKG+IM+LG   ++   IE VS+GS+GLD ALGIGG 
Sbjct: 15  KQIDPEQKEKALAAALAQIEKQFGKGSIMRLGDTQAL--DIEAVSTGSIGLDAALGIGGL 72

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P GRIVEIYGPESSGKTTL L  IAQ+QK+G TCAF+DAEHALD +YARKLGVD   LLI
Sbjct: 73  PMGRIVEIYGPESSGKTTLTLSVIAQAQKSGKTCAFIDAEHALDPVYARKLGVDTDALLI 132

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALR
Sbjct: 133 SQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALR 192

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT++I  + C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G +KD D 
Sbjct: 193 KLTANIKVTNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRSGVVKDGDE 252

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + G++T+VK+VKNK+A PF++V+FDIMYG+GIS   EL+ L      + K+GAWFS++G 
Sbjct: 253 VVGSETKVKIVKNKVAPPFREVQFDIMYGKGISRMNELLILAEANGFIQKAGAWFSYEGT 312

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQ 333
           ++GQG+ N+  +L+EN EIA  IE  +R+
Sbjct: 313 KIGQGKNNAIKWLKENTEIANKIEQEIRE 341


>gi|42416877|gb|AAS16320.1| RecA [Mycobacterium goodii]
          Length = 349

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 209/342 (61%), Positives = 274/342 (80%), Gaps = 8/342 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 7   DREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRVI 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+T
Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG+
Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL------VADSLLQEP 346
           EN++ FL EN+++A  IE  +++  G+       AD +L  P
Sbjct: 305 ENARKFLLENVDVANEIEKKIKEKLGIGAVVTAEADDVLPAP 346


>gi|294626629|ref|ZP_06705226.1| recombinase A [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|294665632|ref|ZP_06730909.1| recombinase A [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292599049|gb|EFF43189.1| recombinase A [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292604578|gb|EFF47952.1| recombinase A [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 344

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 218/325 (67%), Positives = 277/325 (85%), Gaps = 4/325 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AALSQI++ +GKG++M++G +  + E +EV+ +GSL LDIALGIGG PKGR+V
Sbjct: 4   NKKRALSAALSQIEKQFGKGSVMRMGDR--VIEAVEVIPTGSLMLDIALGIGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAECQKNGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VDI+V+DSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSGSVDIVVVDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  ++VFINQ+RMKIGVM    SPE TTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 182 KRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELID+GV+A +VDK+GAW+S+  +R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVDKAGAWYSYGDERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333
           G++N++ +LR+N ++A  +E+ LR+
Sbjct: 302 GKDNARTYLRDNPQVATRLEAELRE 326


>gi|152991399|ref|YP_001357121.1| recombinase A [Nitratiruptor sp. SB155-2]
 gi|166220660|sp|A6Q5K5|RECA_NITSB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|151423260|dbj|BAF70764.1| DNA recombination protein RecA [Nitratiruptor sp. SB155-2]
          Length = 344

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 214/337 (63%), Positives = 275/337 (81%), Gaps = 4/337 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+ A+ QI + +GKGA+++LG +    E IE +S+GSLGLD+ALGIGG PKGRIV
Sbjct: 4   NKQKALDLAIKQIDKAFGKGALVKLGDKQ--IEPIESISTGSLGLDLALGIGGVPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLAL  IA++QK GG  AF+DAEHALD +YA+ LGVD+ NLL+SQPD G
Sbjct: 62  EIYGPESSGKTTLALQIIAEAQKKGGVAAFIDAEHALDVLYAKNLGVDIDNLLVSQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL+I + + RSGAVD+IVIDSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT  +
Sbjct: 122 EQALDIVETIARSGAVDVIVIDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLTGVV 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVR+D+RR+ ++K  +S  GN+
Sbjct: 182 HKMDTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRVDVRRIATLKQGESQIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            R KVVKNK+A PF+Q EFDIM+GEGIS  GELID GVK  I+DKSG+WFS+K  +LGQG
Sbjct: 242 VRAKVVKNKVAPPFRQAEFDIMFGEGISKEGELIDYGVKMDIIDKSGSWFSYKDIKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           REN+K +L+E+ E+A+ IE+ +R+  G+  DS++  P
Sbjct: 302 RENAKAYLKEHPEVAQEIENEIRRAMGM-DDSVMMVP 337


>gi|239917251|ref|YP_002956809.1| protein RecA [Micrococcus luteus NCTC 2665]
 gi|239838458|gb|ACS30255.1| protein RecA [Micrococcus luteus NCTC 2665]
          Length = 351

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/329 (63%), Positives = 266/329 (80%), Gaps = 2/329 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+ KALEAAL+QI + +GKG++M+LG Q      +EV+ +GS+ +D+ALGIGG P+GR
Sbjct: 1   MTDREKALEAALAQIDKQFGKGSVMRLGDQTQ--APVEVIPTGSVAMDVALGIGGLPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTLALH +A +Q+ GG  AF+DAEHALD +YARKLGVD   LL+SQPD
Sbjct: 59  VVEIYGPESSGKTTLALHAVANAQRNGGIAAFIDAEHALDPVYARKLGVDTDALLVSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DMLV SG +DI+VIDSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T 
Sbjct: 119 TGEQALEIMDMLVSSGTLDIVVIDSVAALTPRAEIEGEMGDSHVGLQARLMSQALRKVTG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            + ++K   +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+  +  GN
Sbjct: 179 RLHQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKEAGNPVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVK+VKNKMA PFKQ EFDI+YG GIS  G LID+GV+  IV KSGAWF++ G +LGQ
Sbjct: 239 RTRVKIVKNKMAPPFKQAEFDILYGVGISREGGLIDMGVEEGIVKKSGAWFTYDGDQLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGL 337
           G+EN++ FL++N ++A  IE  +    G+
Sbjct: 299 GKENARRFLKDNPDLANEIEQRILTKLGI 327


>gi|41408946|ref|NP_961782.1| recombinase A [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41397305|gb|AAS05165.1| RecA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 409

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/340 (60%), Positives = 273/340 (80%), Gaps = 4/340 (1%)

Query: 2   DYRK--EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIAL 59
           DYR+       D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+AL
Sbjct: 54  DYRRGTMTQAPDREKALELAMAQIEKSYGKGSVMRLGDE--MRQPISVIPTGSIALDVAL 111

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           GIGG P+GR+VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD 
Sbjct: 112 GIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDT 171

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
            +LL+SQPDTGEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLM
Sbjct: 172 DSLLVSQPDTGEQALEIADMLIRSGALDILVIDSVAALVPRAELEGEMGDSHVGLQARLM 231

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           SQALRK+T +++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++
Sbjct: 232 SQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETL 291

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           KD  +  GN+TRVK+VKNK++ PFKQ EFDI+YG GIS  G LID+GV    + KSG+WF
Sbjct: 292 KDGTNAVGNRTRVKIVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGSWF 351

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +++G++LGQG+EN++ FL EN E+A  IE  +++  G+ A
Sbjct: 352 TYEGEQLGQGKENARTFLMENDEVANEIEKKIKEKLGIGA 391


>gi|3219854|sp|P95846|RECA_STRRM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|1729800|emb|CAA63924.1| RecA protein [Streptomyces rimosus]
          Length = 376

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/331 (62%), Positives = 270/331 (81%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G +    E IEV+ + S  LD+ALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRMGERSK--EPIEVIPTASTALDVALGVGGIPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTTL LH +A +QK GG+ AF+DAEHALD  YA+KLGVD   L++SQ
Sbjct: 59  GRVVEIYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYAKKLGVDTDALILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTEAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR KVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   + KSGAW++++G +L
Sbjct: 239 GNRTRCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFIRKSGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FL++N ++A  +E  +++  G+
Sbjct: 299 GQGKENARNFLKDNPDLANEVEKKIKEKLGV 329


>gi|270264043|ref|ZP_06192311.1| DNA integration/recombination/invertion protein [Serratia odorifera
           4Rx13]
 gi|270042236|gb|EFA15332.1| DNA integration/recombination/invertion protein [Serratia odorifera
           4Rx13]
          Length = 354

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/314 (65%), Positives = 262/314 (83%), Gaps = 2/314 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINSRGELVDLGVKHKMIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIA 324
            N+  FL+EN  +A
Sbjct: 304 ANACNFLKENPAVA 317


>gi|254821760|ref|ZP_05226761.1| recombinase A [Mycobacterium intracellulare ATCC 13950]
          Length = 350

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/344 (60%), Positives = 274/344 (79%), Gaps = 10/344 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 6   DREKALELAMAQIEKSYGKGSVMRLGDE--MRQPISVIPTGSIALDVALGIGGLPRGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGALDILVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+T
Sbjct: 184 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK++ PFKQ EFDI+YG GIS  G LID+GV    + KSG+WF+++G++LGQG+
Sbjct: 244 RVKIVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGSWFTYEGEQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA--------DSLLQEP 346
           EN++ FL EN E+A  IE  +++  G+ A        DS+L  P
Sbjct: 304 ENARTFLMENDEVANEIEKKIKEKLGIGAVVTDDLSDDSVLPAP 347


>gi|225375593|ref|ZP_03752814.1| hypothetical protein ROSEINA2194_01218 [Roseburia inulinivorans DSM
           16841]
 gi|225212572|gb|EEG94926.1| hypothetical protein ROSEINA2194_01218 [Roseburia inulinivorans DSM
           16841]
          Length = 350

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 203/323 (62%), Positives = 265/323 (82%), Gaps = 1/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+AA+SQI++ YGKG+IM+LG   S    +E + +GSL LDIALG+GG PKGRI+
Sbjct: 5   DKLKALDAAISQIEKQYGKGSIMKLGDN-SAHMNVETIPTGSLSLDIALGLGGLPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GG   F+DAEHALD  YA+ +GV++  L ISQPD G
Sbjct: 64  EIYGPESSGKTTVALHAVAEVQKRGGIAGFIDAEHALDPAYAKNIGVNIDELYISQPDCG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+GDMG+S  G+QARLMSQALRKLT+ I
Sbjct: 124 EQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKLTAVI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S CI++FINQ+R K+GVMFG+PETTTGG ALKFYSSVR+D+RR+ S+K    + GN+T
Sbjct: 184 SKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRMDVRRIESLKQAGEVVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFK+ EFDIM+G+GIS  G+++DL     I+ KSGAW+++ G ++GQGR
Sbjct: 244 RVKIVKNKVAPPFKEAEFDIMFGKGISKEGDILDLAADCGIIVKSGAWYAYNGDKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           EN+K +LREN  + E +E+ +R+
Sbjct: 304 ENAKTYLRENPLVCEEVEAKVRE 326


>gi|253702323|ref|YP_003023512.1| recombinase A [Geobacter sp. M21]
 gi|259563337|sp|C6E6X6|RECA_GEOSM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|251777173|gb|ACT19754.1| recA protein [Geobacter sp. M21]
          Length = 338

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/318 (65%), Positives = 271/318 (85%), Gaps = 1/318 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL+ A+SQI++ +GKGAIM+LG++ ++ + I  + +GSL LDIALG+GG P+GR++EI+
Sbjct: 9   KALDLAMSQIEKQFGKGAIMRLGNEEALPD-IASIPTGSLSLDIALGVGGVPRGRVIEIF 67

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTLALH I+++QK GG  AFVDAEHALD  YARKLGV   +LL+SQPDTGEQA
Sbjct: 68  GPESSGKTTLALHVISEAQKLGGIAAFVDAEHALDIGYARKLGVKTDDLLVSQPDTGEQA 127

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI + LVRSGA+D++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  IS+S
Sbjct: 128 LEIAETLVRSGAIDVLVVDSVAALVPKAEIEGDMGDSHMGLQARLMSQALRKLTGIISKS 187

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            C ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIR++ ++K  + + G++TRVK
Sbjct: 188 NCCVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRKIAALKQGNDMIGSRTRVK 247

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VVKNK+A PFK+VEFDI+YGEGIS  G+++DL V+ ++V+KSGAWFS+  +R+GQGRENS
Sbjct: 248 VVKNKVAPPFKEVEFDILYGEGISKEGDILDLAVERNVVEKSGAWFSYGKERIGQGRENS 307

Query: 314 KIFLRENIEIAENIESLL 331
           ++FL+E+ EI   I   L
Sbjct: 308 RLFLKEHPEITAEIREKL 325


>gi|158521280|ref|YP_001529150.1| recA protein [Desulfococcus oleovorans Hxd3]
 gi|158510106|gb|ABW67073.1| recA protein [Desulfococcus oleovorans Hxd3]
          Length = 358

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/331 (62%), Positives = 273/331 (82%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+  +K+KA+E+A++QI+R +GKGAIM+LG+ G++   +  +S+GS+ LD+ALG+GG P+
Sbjct: 1   MSNAEKTKAVESAITQIERQFGKGAIMKLGT-GTVIN-VPSISTGSIALDVALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+ EIYG ESSGKTT+ALHT+A++QK GG  AF+DAEHALD+ YA+KLGV+   LL+SQ
Sbjct: 59  GRVTEIYGQESSGKTTIALHTVAEAQKKGGIAAFIDAEHALDTAYAKKLGVNTDELLVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI DMLVRSGA+DI+VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL
Sbjct: 119 PDTGEQALEIADMLVRSGAIDILVIDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T  I ++   ++FINQ+R KIGV FG+PETT GGNALKFY+SVRLDIRR  +IKD   + 
Sbjct: 179 TGVIGKTNTSIIFINQIREKIGVFFGNPETTPGGNALKFYASVRLDIRRSAAIKDGQEVV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ RVKVVKNK+A PFK VEFD+MYGEGIS  GEL+D+GV+ +I++KSG+W+S+ G+R+
Sbjct: 239 GNRVRVKVVKNKIAPPFKTVEFDMMYGEGISKTGELLDIGVENNIIEKSGSWYSYNGERI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQGREN K F  +  E+   + + +R++ GL
Sbjct: 299 GQGRENVKQFFADKPEVFNELYAKVRESVGL 329


>gi|254362313|ref|ZP_04978425.1| recombinase RecA [Mannheimia haemolytica PHL213]
 gi|261493255|ref|ZP_05989782.1| recombinase A [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261496502|ref|ZP_05992882.1| recombinase A [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|11387039|sp|Q9RNY0|RECA_PASHA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|5825547|gb|AAD53288.1|AF176376_1 RecA recombinase [Mannheimia haemolytica]
 gi|153093893|gb|EDN74821.1| recombinase RecA [Mannheimia haemolytica PHL213]
 gi|261307705|gb|EEY09028.1| recombinase A [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261311105|gb|EEY12281.1| recombinase A [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 368

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/358 (61%), Positives = 282/358 (78%), Gaps = 10/358 (2%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K+++   K KAL AAL+QI++ +GKG+IM+LG   ++   IE VS+GSLGLD ALGIGG 
Sbjct: 13  KQIDPEQKEKALAAALAQIEKQFGKGSIMKLGDTQAL--DIEAVSTGSLGLDSALGIGGL 70

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P GRIVEIYGPESSGKTTL L  +AQ+QK G TCAF+DAEHALD IYARKLGVD   LLI
Sbjct: 71  PMGRIVEIYGPESSGKTTLTLSVVAQAQKNGKTCAFIDAEHALDPIYARKLGVDTDGLLI 130

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALR
Sbjct: 131 SQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALR 190

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT++I  + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G +KD D 
Sbjct: 191 KLTANIKATNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRSGVVKDGDE 250

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + G++T+VK+VKNK+A PF++V+FDIMYGEGI+   EL+ L      ++K+GAWFS++G+
Sbjct: 251 VIGSETKVKIVKNKVAPPFREVQFDIMYGEGIARMNELLILAESHGFINKAGAWFSYEGE 310

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN-TKDDADKDDTDN 361
           ++GQG+ N+  +L+E+ E+A  IE  +R       + L+  P    T D  + D+ D+
Sbjct: 311 KIGQGKNNAIKWLKEHPEVASKIEQDIR-------NLLISNPTFTATPDSENADNADD 361


>gi|4894746|gb|AAD32599.1|AF127333_1 RecA [Xenorhabdus nematophila]
          Length = 358

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/325 (64%), Positives = 263/325 (80%), Gaps = 2/325 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P G
Sbjct: 3   NDENKQKALAAALGQIEKQFGKGSIMRLGENRSM--DVETISTGSLSLDIALGAGGLPMG 60

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQP
Sbjct: 61  RIVEIYGPESSGKTTLTLQVIAAAQREGRTCAFIDAEHALDPVYAKKLGVDIDNLLCSQP 120

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL 
Sbjct: 121 DTGEQALEICDALSRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 180

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++  S  +L+FINQ+RMKIGVMFG+PET  GGNALKFY+SVRLDIRR GS+K+ D + G
Sbjct: 181 GNLKNSNTLLIFINQIRMKIGVMFGNPETPPGGNALKFYASVRLDIRRTGSVKNGDEVVG 240

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           ++TRVKVVKNK+A+PFKQ EF I+YGEGI+  GELIDL VK  +V+K+GAW+S+ G ++G
Sbjct: 241 SETRVKVVKNKVAAPFKQAEFQILYGEGINTLGELIDLSVKHKMVEKAGAWYSYNGDKIG 300

Query: 308 QGRENSKIFLRENIEIAENIESLLR 332
           QG+ N+ I+L+E+ E A  +   LR
Sbjct: 301 QGKANATIYLKEHPETAAELNKKLR 325


>gi|21242489|ref|NP_642071.1| recombinase A [Xanthomonas axonopodis pv. citri str. 306]
 gi|59800177|sp|P0A0W4|RECA_XANAC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|59800178|sp|P0A0W5|RECA_XANCI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|2253314|gb|AAB63678.1| RecA [Xanthomonas citri]
 gi|21107938|gb|AAM36607.1| RecA protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 344

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 218/325 (67%), Positives = 277/325 (85%), Gaps = 4/325 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AALSQI++ +GKG++M++G +  + E +EV+ +GSL LDIALGIGG PKGR+V
Sbjct: 4   NKKRALSAALSQIEKQFGKGSVMRMGDR--VIEAVEVIPTGSLMLDIALGIGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAECQKNGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VDI+V+DSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSGSVDIVVVDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  ++VFINQ+RMKIGVM    SPE TTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 182 KRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELID+GV+A +VDK+GAW+S+  +R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVDKAGAWYSYGDERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333
           G++N++ +LR+N ++A  +E+ LR+
Sbjct: 302 GKDNARTYLRDNSQVATRLEAELRE 326


>gi|132232|sp|P26346|RECA_PROVU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|6006603|emb|CAB56804.1| recA [Proteus vulgaris]
          Length = 325

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/315 (65%), Positives = 262/315 (83%), Gaps = 2/315 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD + + G++T
Sbjct: 184 KQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAE 325
            N+  FL+EN  + E
Sbjct: 304 ANACNFLKENSLVKE 318


>gi|253576029|ref|ZP_04853362.1| recA protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844604|gb|EES72619.1| recA protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 346

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 210/325 (64%), Positives = 268/325 (82%), Gaps = 2/325 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  ++  ALE AL +I++ YGKGA+M+LG    +   +E VSSG+L LDIALG+GGFP+G
Sbjct: 3   NQENRQAALEKALKEIEKSYGKGAVMKLGEAAHV--QVETVSSGNLALDIALGVGGFPRG 60

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+E+YGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD +YA+ +GV++  LL+SQP
Sbjct: 61  RIIEVYGPESSGKTTVALHAIAEVQKLGGQAAFIDAEHALDPLYAKNIGVNIDELLLSQP 120

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D LVR+GAVDIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQA+RKL+
Sbjct: 121 DTGEQALEIADALVRTGAVDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQAMRKLS 180

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            S+S+SK I +FINQ+R K+GV FGSPE T GG ALKFYSSVRLD+RR+ +IK  + + G
Sbjct: 181 GSLSKSKTIAIFINQLREKVGVSFGSPEVTPGGRALKFYSSVRLDVRRMETIKLGNEMVG 240

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           ++TR+KVVKNK+A PFKQVE D+MYGEGIS    L+DLGV+ ++V+KSG+WFS+ G RLG
Sbjct: 241 SRTRIKVVKNKVAPPFKQVEVDMMYGEGISKEATLLDLGVELNVVEKSGSWFSYAGDRLG 300

Query: 308 QGRENSKIFLRENIEIAENIESLLR 332
           QGREN+K FL+E+ E+A  I+S +R
Sbjct: 301 QGRENAKQFLKEHPEVAFKIDSEIR 325


>gi|251773419|gb|EES53968.1| recA protein [Leptospirillum ferrodiazotrophum]
          Length = 357

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 209/327 (63%), Positives = 273/327 (83%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K ++L+ ALSQI++ +GKG+IM++G    I E   V+SSGSL LDIALGIGG+PKGRI+
Sbjct: 7   NKQRSLDLALSQIEKQFGKGSIMRMGKDAPIIE-TPVISSGSLALDIALGIGGYPKGRII 65

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH IA+  K  G  AF+DAEHALD  YARKLGV  ++LLI+QPD+G
Sbjct: 66  EIYGPESSGKTTLALHAIAEVHKKNGMAAFIDAEHALDLGYARKLGVKTEDLLIAQPDSG 125

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSG++D+IV+DSVAAL P+AE+EGDMG+S  G+QARLMSQALRKLTSSI
Sbjct: 126 EQALEIAETLVRSGSLDLIVVDSVAALVPKAELEGDMGDSHMGLQARLMSQALRKLTSSI 185

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+S RLDIRR+ SIK+ D + GN+ 
Sbjct: 186 SKSSTVVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIESIKEGDHVLGNRV 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PF+Q EFDI + EG+S  GELIDLGV+  +++KSG+W+S+  +++GQG+
Sbjct: 246 RVKVVKNKMAPPFRQAEFDISFNEGVSSVGELIDLGVEHGLLEKSGSWYSYGTEKIGQGK 305

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           E  K +L+ + ++A++++  +R+ AGL
Sbjct: 306 EAVKGYLKAHPDLAKSLDRAIREKAGL 332


>gi|197119991|ref|YP_002140418.1| recombinase A [Geobacter bemidjiensis Bem]
 gi|226723629|sp|B5ED05|RECA_GEOBB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|197089351|gb|ACH40622.1| recombinase A [Geobacter bemidjiensis Bem]
          Length = 338

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/318 (65%), Positives = 271/318 (85%), Gaps = 1/318 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL+ A+SQI++ +GKGAIM+LG++ ++ + I  + +GSL LDIALG+GG P+GR++EI+
Sbjct: 9   KALDLAMSQIEKQFGKGAIMRLGNEEALPD-IASIPTGSLSLDIALGVGGVPRGRVIEIF 67

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTLALH I+++QK GG  AFVDAEHALD  YARKLGV   +LL+SQPDTGEQA
Sbjct: 68  GPESSGKTTLALHVISEAQKLGGIAAFVDAEHALDIGYARKLGVKTDDLLVSQPDTGEQA 127

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI + LVRSGA+D++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  IS+S
Sbjct: 128 LEIAETLVRSGAIDVLVVDSVAALVPKAEIEGDMGDSHMGLQARLMSQALRKLTGIISKS 187

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            C ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIR++ ++K  + + G++TRVK
Sbjct: 188 NCCVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRKIAALKQGNDMIGSRTRVK 247

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VVKNK+A PFK+VEFDI+YGEGIS  G+++DL V+ ++V+KSGAWFS+  +R+GQGRENS
Sbjct: 248 VVKNKVAPPFKEVEFDILYGEGISKEGDILDLAVERNVVEKSGAWFSYGKERIGQGRENS 307

Query: 314 KIFLRENIEIAENIESLL 331
           ++FL+E+ EI   I   L
Sbjct: 308 RLFLKEHPEITAEIREKL 325


>gi|325068442|ref|ZP_08127115.1| recA protein [Actinomyces oris K20]
          Length = 413

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/318 (64%), Positives = 261/318 (82%), Gaps = 2/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+SKAL  AL+QI + +GKG++M+LG +      + V+ +GS+ LD+ALG+GG P+GRIV
Sbjct: 9   DRSKALATALAQIDKSFGKGSVMRLGDESR--PPVSVIPTGSVALDVALGVGGLPRGRIV 66

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD +YA+ LGVD+ NLL+SQPDTG
Sbjct: 67  EVYGPESSGKTTVALHAVASAQRAGGNAAFIDAEHALDPVYAKALGVDIDNLLVSQPDTG 126

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSG +DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 127 EQALEITDMLVRSGGLDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 186

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S +    +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLD+RR+G +KD D   GN+T
Sbjct: 187 SSTGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDVRRIGGLKDGDQPVGNRT 246

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFKQ EFDI+YG+GIS  G L+DLGV   +V KSGAWF++   +LGQG+
Sbjct: 247 RVKVVKNKMAPPFKQAEFDILYGQGISREGSLLDLGVDNGVVRKSGAWFTYGEDQLGQGK 306

Query: 311 ENSKIFLRENIEIAENIE 328
           EN++ FL++N ++A  IE
Sbjct: 307 ENARNFLKDNPQLAAEIE 324


>gi|256832273|ref|YP_003161000.1| recA protein [Jonesia denitrificans DSM 20603]
 gi|256685804|gb|ACV08697.1| recA protein [Jonesia denitrificans DSM 20603]
          Length = 364

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 209/328 (63%), Positives = 265/328 (80%), Gaps = 2/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALEAAL QI R +GKG+IM+LG        ++++ +GS+ LD+ALGIGG P+GRIV
Sbjct: 6   DREKALEAALGQIDRQFGKGSIMRLGDDNR--PKVDIIPTGSIALDVALGIGGLPRGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A +QK GG  AF+DAEHALD +YA+KLGVD   LL+SQPDTG
Sbjct: 64  EVYGPESSGKTTVALHAVANAQKNGGIAAFIDAEHALDPVYAQKLGVDTDALLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDML+RSGA+D+IV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEITDMLIRSGAIDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S +    +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+DIRR+ ++K+     GN+T
Sbjct: 184 STTGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRMDIRRIETLKEGSEPVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFKQ EFDI+YG GIS  G LID+GV   IV KSG+WF+++G +LGQG+
Sbjct: 244 RVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDMGVDNGIVRKSGSWFTYEGDQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338
           EN++ FLR+N E+A  IE  +    G++
Sbjct: 304 ENARKFLRDNPELAAEIERRIMVKLGII 331


>gi|157369086|ref|YP_001477075.1| recombinase A [Serratia proteamaculans 568]
 gi|166918716|sp|A8GA07|RECA_SERP5 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|157320850|gb|ABV39947.1| recA protein [Serratia proteamaculans 568]
          Length = 353

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/314 (65%), Positives = 262/314 (83%), Gaps = 2/314 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINSRGELVDLGVKHKMIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIA 324
            N+  FL+EN  +A
Sbjct: 304 ANACNFLKENPAVA 317


>gi|37359206|gb|AAN73889.1| DNA recombinase A [primary endosymbiont of Sitophilus oryzae]
          Length = 355

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/322 (63%), Positives = 266/322 (82%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GK +IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKCSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S   + AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMRLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GS+K+ D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKEGDVVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+  GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQIMYGEGINIRGELVDLGVKHKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N+  FL+++ E+A  ++  LR
Sbjct: 304 ANACTFLKDHPELAAELDKKLR 325


>gi|120437570|ref|YP_863256.1| RecA protein [Gramella forsetii KT0803]
 gi|117579720|emb|CAL68189.1| RecA protein [Gramella forsetii KT0803]
          Length = 337

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/323 (64%), Positives = 263/323 (81%), Gaps = 3/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+  L ++ + YGKG +M++  Q  +   ++ +S+GSLGLD+ALG+GG+P+GR++E
Sbjct: 10  KLKALKLTLDKMDKTYGKGTVMKMSDQ--VVVDVDAISTGSLGLDLALGVGGYPRGRVIE 67

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA++QK GG  AF+DAEHA D  YA KL VD+ NL+ISQPD GE
Sbjct: 68  IYGPESSGKTTLTLHAIAEAQKKGGIAAFIDAEHAFDRFYAEKLDVDIDNLIISQPDNGE 127

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD L+RSGA+DIIVIDSVAALTP++EIEG+MG+S  G+ ARLMSQALRKLTSSIS
Sbjct: 128 QALEITDNLIRSGAIDIIVIDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTSSIS 187

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK-DSITGNQT 250
           ++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IKD  +++ GN+T
Sbjct: 188 KTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKDSANNVMGNKT 247

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK  EFDIMYGEGIS  GE+ID+GV   IV KSG+WFS++  +LGQGR
Sbjct: 248 RVKVVKNKVAPPFKMAEFDIMYGEGISKIGEIIDIGVDYEIVKKSGSWFSYEDTKLGQGR 307

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           +  KI L++N ++ E +E  ++ 
Sbjct: 308 DAVKILLKDNPDLMEELEEKIKN 330


>gi|308237899|emb|CBK52096.1| RecA protein [Acidithiobacillus ferrooxidans]
          Length = 279

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/279 (73%), Positives = 246/279 (88%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GSLGLD+ALG+GG P+GR+VEIYGPESSGKTTL LH IA  Q  GGT AF+DAEHALD 
Sbjct: 1   TGSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLTLHAIASCQAAGGTAAFIDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
            YA KLGVDL+NLLISQPDTGEQALEI DMLVRSGAVD+IVIDSVAALTP+AEIEGDMG+
Sbjct: 61  GYAHKLGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGDMGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           S  G+QARLMSQALRKLT++ISR+  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SV
Sbjct: 121 SHVGLQARLMSQALRKLTANISRTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
           RLDIRR+G+IK  D + GN TRVKVVKNK+A PF++ EF I YGEGIS   EL+DLGVK 
Sbjct: 181 RLDIRRIGAIKKSDEVVGNDTRVKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVKF 240

Query: 290 SIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
            IV+KSGAW+S++G+R+GQG++N++ +L+E+ E+A NIE
Sbjct: 241 DIVEKSGAWYSYQGERIGQGKDNARQYLKEHPELAANIE 279


>gi|45825420|gb|AAS77559.1| RecA protein [Bradyrhizobium sp. ICMP 12835]
          Length = 277

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/276 (75%), Positives = 248/276 (89%), Gaps = 1/276 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG      + +E VSSGSLGLDIALGIGG PKGR+
Sbjct: 3   MDKSKALAAALSQIERQFGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRV 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I++S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D + GN 
Sbjct: 182 INKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEVVGNT 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           TRVKVVKNK+A PFKQVEFDIMYGEG+S  GE++DL
Sbjct: 242 TRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDL 277


>gi|304413368|ref|ZP_07394841.1| RecA/RadA recombinase [Candidatus Regiella insecticola LSR1]
 gi|304284211|gb|EFL92604.1| RecA/RadA recombinase [Candidatus Regiella insecticola LSR1]
          Length = 391

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/322 (63%), Positives = 264/322 (81%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL+QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 36  NKKKALAAALTQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 93

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPD G
Sbjct: 94  EIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDNG 153

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG+MG++  G+ AR+MS+A+RK   ++
Sbjct: 154 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEMGDAHMGLAARMMSKAMRKFAGNL 213

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ + + G+ T
Sbjct: 214 NNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKNGEEVIGSDT 273

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I YGEGI+  GELI+LGVK  +++K+GAW+S+KG ++GQG+
Sbjct: 274 RVKVVKNKIAAPFKQAEFQIHYGEGINLNGELIELGVKHKLIEKAGAWYSYKGNKIGQGK 333

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N+  +L+EN  I   ++  LR
Sbjct: 334 ANASQYLKENEAIKSELDKTLR 355


>gi|71089124|gb|AAZ23640.1| RecA [uncultured Burkholderia sp.]
          Length = 288

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/289 (71%), Positives = 254/289 (87%), Gaps = 1/289 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG++M+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +A+ QK GGT AF+DAEHALD  YA KLGVD+  LL+SQPDTGEQALEI D LVR
Sbjct: 60  LTLQVVAEMQKLGGTAAFIDAEHALDIQYAAKLGVDVSELLVSQPDTGEQALEIADALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQG++
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQGKD 288


>gi|121536015|ref|ZP_01667805.1| recA protein [Thermosinus carboxydivorans Nor1]
 gi|121305405|gb|EAX46357.1| recA protein [Thermosinus carboxydivorans Nor1]
          Length = 345

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 210/324 (64%), Positives = 264/324 (81%), Gaps = 1/324 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK KALE A+ QI++ +GKG+IM+LG   +    +EV+ +G L LDIALG+GG P+GR+
Sbjct: 1   MDKLKALENAMRQIEKEFGKGSIMRLGEAAAKMN-VEVIPTGCLALDIALGVGGIPRGRV 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYG ESSGKTT+ALH IAQ+QK GG  AF+DAEHALD IYA+KLGVD +NLLISQPD 
Sbjct: 60  VEIYGHESSGKTTVALHMIAQAQKMGGIAAFIDAEHALDPIYAKKLGVDTENLLISQPDN 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+DIIV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  
Sbjct: 120 GEQALEIADALVRSGAIDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGI 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S+   +FINQ+R K+GVMFG+PETTTGG ALKFY+SVRL++R+  +IK    + G++
Sbjct: 180 ISKSRTTAIFINQIREKVGVMFGNPETTTGGRALKFYASVRLEVRKAEAIKQGSEVIGSR 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TR+KVVKNK+A PF+Q EFDIMYGEGIS  G L+D+G +  I+ KSG+W+S+K  RLGQG
Sbjct: 240 TRIKVVKNKVAPPFRQAEFDIMYGEGISREGSLVDIGTELDIITKSGSWYSYKDSRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQ 333
           +EN K +L+EN  IAE IE  +R+
Sbjct: 300 KENVKEYLKENPHIAEEIEMKIRE 323


>gi|227591|prf||1707271D recA gene
          Length = 324

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/310 (66%), Positives = 260/310 (83%), Gaps = 2/310 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 5   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 123 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD + + G++T
Sbjct: 183 KQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 243 RVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 302

Query: 311 ENSKIFLREN 320
            N+  FL+EN
Sbjct: 303 ANACNFLKEN 312


>gi|148273206|ref|YP_001222767.1| recombinase A [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
 gi|166220639|sp|A5CSL7|RECA_CLAM3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|147831136|emb|CAN02088.1| recombinase A [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
          Length = 362

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 213/330 (64%), Positives = 262/330 (79%), Gaps = 2/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ K+LE AL+QI R +GKG++M+LGS       + V+ +GS+ LD+ALGIGG P+GRIV
Sbjct: 6   DREKSLETALAQIDRQFGKGSVMRLGSDER--APVAVIPTGSVALDVALGIGGLPRGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLHAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG++D++VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  +
Sbjct: 124 EQALEIADMLVRSGSIDLVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++++  ++FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+T
Sbjct: 184 NQTQTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFKQ EFDI+YG GIS  G LID GV+  IV KSGAW+++ G +LGQG+
Sbjct: 244 RVKVVKNKMAPPFKQAEFDILYGTGISREGSLIDFGVEHEIVRKSGAWYTYDGDQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           ENS+  L  N EIA  IE  ++   GLV D
Sbjct: 304 ENSRKHLLNNPEIAAEIEQKIKVKLGLVKD 333


>gi|42416895|gb|AAS16329.1| RecA [Mycobacterium porcinum]
          Length = 351

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/329 (62%), Positives = 270/329 (82%), Gaps = 2/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 7   DREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRVV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+T
Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG+
Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           EN++ FL EN+++A  IE  +++  G+ A
Sbjct: 305 ENARKFLLENVDVANEIEKKIKEKLGIGA 333


>gi|308176876|ref|YP_003916282.1| RecA bacterial DNA recombination protein [Arthrobacter arilaitensis
           Re117]
 gi|307744339|emb|CBT75311.1| RecA bacterial DNA recombination protein [Arthrobacter arilaitensis
           Re117]
          Length = 350

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 211/327 (64%), Positives = 263/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALEA L QI + YGKG++M+LG +      IEV+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 6   DREKALEAVLGQIDKAYGKGSVMRLGDETR--APIEVIPTGSVALDVALGIGGLPRGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +QK GG  AF+DAEHALD  YA+KLGVD   LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVASAQKAGGVAAFIDAEHALDPEYAKKLGVDTDALLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLV SGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T  +
Sbjct: 124 EQALEIMDMLVGSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGRL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S SK   +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+DIRR+ ++K+  +  GN+T
Sbjct: 184 SASKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDIRRIETLKEGTNAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R K+VKNKMA PFKQ EFDI+YG GIS  G LID+GV+ ++V KSGAWF++ G +LGQG+
Sbjct: 244 RCKIVKNKMAPPFKQAEFDILYGHGISREGSLIDMGVEHNLVKKSGAWFTYDGDQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN++ FLR+N ++A  +E  + Q  G+
Sbjct: 304 ENARRFLRDNPDLANELERQILQKLGV 330


>gi|42416873|gb|AAS16318.1| RecA [Mycobacterium fortuitum]
 gi|65306701|gb|AAY41903.1| RecA [Mycobacterium conceptionense]
          Length = 351

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/329 (62%), Positives = 270/329 (82%), Gaps = 2/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 7   DREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRVV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+T
Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG+
Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           EN++ FL EN+++A  IE  +++  G+ A
Sbjct: 305 ENARKFLLENVDVANEIEKKIKEKLGIGA 333


>gi|42416887|gb|AAS16325.1| RecA [Mycobacterium peregrinum]
          Length = 351

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/329 (62%), Positives = 270/329 (82%), Gaps = 2/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 7   DREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRVV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R+KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+T
Sbjct: 185 NNSGTTAIFINQLRVKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG GIS  G LID+GV+   + KSG+WF+++G++LGQG+
Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGHGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           EN++ F+ EN+++A  IE  +++  G+ A
Sbjct: 305 ENARKFMLENVDVANEIEKKIKEKLGIGA 333


>gi|295131969|ref|YP_003582645.1| RecA [Zunongwangia profunda SM-A87]
 gi|294979984|gb|ADF50449.1| RecA [Zunongwangia profunda SM-A87]
          Length = 339

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/318 (64%), Positives = 262/318 (82%), Gaps = 3/318 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+  L ++ + YGKG +M++G Q    E I  +S+GSLGLD+ALG+GG+P+GRI+E
Sbjct: 10  KLKALKLTLDKMDKTYGKGTVMKMGDQA--IENIPSISTGSLGLDLALGVGGYPRGRIIE 67

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA++QK+GG  AF+DAEHA D  YA KLG+D++NL+ISQPD GE
Sbjct: 68  IYGPESSGKTTLTLHAIAEAQKSGGIAAFIDAEHAFDRFYAEKLGIDIENLIISQPDNGE 127

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD L+RSGA+DIIVIDSVAALTP++EIEG+MG+S  G+ ARLMSQALRKLTS+IS
Sbjct: 128 QALEITDNLIRSGAIDIIVIDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTSTIS 187

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-ITGNQT 250
           ++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IK+  S + GN+T
Sbjct: 188 KTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKNSSSEVMGNKT 247

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK  EFDIMYGEG+S  GE+ID+GV   I+ KSG+WFS++  +LGQGR
Sbjct: 248 RVKVVKNKVAPPFKTAEFDIMYGEGVSKIGEIIDIGVDYEIIKKSGSWFSYEDTKLGQGR 307

Query: 311 ENSKIFLRENIEIAENIE 328
           +  K  L++N ++ + +E
Sbjct: 308 DAVKTILKDNPDLMDELE 325


>gi|118472151|ref|YP_887057.1| recombinase A [Mycobacterium smegmatis str. MC2 155]
 gi|2500086|sp|Q59560|RECA_MYCS2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|34811308|pdb|1UBC|A Chain A, Structure Of Reca Protein
 gi|34811309|pdb|1UBE|A Chain A, Msreca-Adp Complex
 gi|34811310|pdb|1UBF|A Chain A, Msreca-Atpgs Complex
 gi|34811311|pdb|1UBG|A Chain A, Msreca-Datp Complex
 gi|109157789|pdb|2G88|A Chain A, Msreca-Datp Complex
 gi|150261332|pdb|2ODN|A Chain A, Msreca-Datp Complex
 gi|150261333|pdb|2ODW|A Chain A, Msreca-Atp-Gama-S Complex
 gi|150261334|pdb|2OE2|A Chain A, Msreca-Native-Low Humidity 95%
 gi|150261335|pdb|2OEP|A Chain A, Msreca-Adp-Complex
 gi|150261336|pdb|2OES|A Chain A, Msreca-Native-Ssb
 gi|150261337|pdb|2OFO|A Chain A, Msreca-Native
 gi|217035314|pdb|2ZR7|A Chain A, Msreca Native Form Ii'
 gi|217035328|pdb|2ZRM|A Chain A, Msreca Datp Form Iv
 gi|217035329|pdb|2ZRN|A Chain A, Msreca Form Iv
 gi|217035330|pdb|2ZRO|A Chain A, Msreca Adp Form Iv
 gi|217035331|pdb|2ZRP|A Chain A, Msreca Datp Form Ii'
 gi|1430892|emb|CAA67597.1| RecA protein [Mycobacterium smegmatis str. MC2 155]
 gi|42416901|gb|AAS16332.1| RecA [Mycobacterium smegmatis]
 gi|118173438|gb|ABK74334.1| protein RecA [Mycobacterium smegmatis str. MC2 155]
          Length = 349

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 209/342 (61%), Positives = 273/342 (79%), Gaps = 8/342 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 7   DREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRVI 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+T
Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG+
Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL------VADSLLQEP 346
           EN++ FL EN ++A  IE  +++  G+       AD +L  P
Sbjct: 305 ENARKFLLENTDVANEIEKKIKEKLGIGAVVTAEADDVLPAP 346


>gi|84496893|ref|ZP_00995747.1| recombinase A [Janibacter sp. HTCC2649]
 gi|84383661|gb|EAP99542.1| recombinase A [Janibacter sp. HTCC2649]
          Length = 354

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/330 (62%), Positives = 268/330 (81%), Gaps = 2/330 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  D+ K+L   L QI++ +GKGAIM+LG    +   IEV+ +GS+ LD+ALGIGG P+G
Sbjct: 9   NANDRDKSLGLVLGQIEKSHGKGAIMRLGD--DVRAPIEVIPTGSIALDVALGIGGLPRG 66

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA+KLGVD  NLL+SQP
Sbjct: 67  RVVEIYGPESSGKTTVALHAVASAQRAGGIAAFIDAEHALDPEYAKKLGVDTDNLLVSQP 126

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T
Sbjct: 127 DTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKIT 186

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     G
Sbjct: 187 GALSNTNTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDPVG 246

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +LG
Sbjct: 247 NRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQLG 306

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGL 337
           QG+EN++ FL++N ++++ +E  ++Q  G+
Sbjct: 307 QGKENARAFLKDNPDLSDELEKKIKQKLGI 336


>gi|290968717|ref|ZP_06560255.1| RecA protein [Megasphaera genomosp. type_1 str. 28L]
 gi|290781370|gb|EFD93960.1| RecA protein [Megasphaera genomosp. type_1 str. 28L]
          Length = 348

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 211/335 (62%), Positives = 268/335 (80%), Gaps = 8/335 (2%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K  ALE A+ +I++ +GKGAIM+LG        +EV+SSGSL +D+A+G+GG+P+GR++E
Sbjct: 4   KQTALENAMKKIEKDFGKGAIMRLGDLAGKMN-LEVISSGSLAVDLAVGVGGYPRGRVIE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH IA +QK+GG  AF+DAEHALD +YAR LGVD   LLISQPD GE
Sbjct: 63  IYGPESSGKTTLALHAIASAQKSGGIAAFIDAEHALDPVYARHLGVDTGELLISQPDNGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEIT+ LVRSGAVDIIV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  I+
Sbjct: 123 QALEITEELVRSGAVDIIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGIIA 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +SK I++FINQ+R K+GVMFG+PETTTGG ALKFY+S+R++IR+   IK    +TGN+ R
Sbjct: 183 KSKAIVIFINQLREKVGVMFGNPETTTGGRALKFYASIRMEIRKGEVIKSAGDVTGNRAR 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF+  EFDIMYG GIS  G ++DLG    I++KSG W+S+KG+RLGQG+E
Sbjct: 243 VKVVKNKVAPPFRNCEFDIMYGTGISREGTILDLGASMDIIEKSGTWYSYKGERLGQGKE 302

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           N K+FL+E+ E A+ +E ++R       D+L  EP
Sbjct: 303 NVKLFLKEHPETADEVERIIR-------DTLAAEP 330


>gi|45825424|gb|AAS77561.1| RecA protein [Bradyrhizobium sp. ICMP 14755]
          Length = 277

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/276 (74%), Positives = 248/276 (89%), Gaps = 1/276 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG      + +E VSSGSLGLDIALGIGG PKGR+
Sbjct: 3   MDKSKALAAALSQIERQFGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRV 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I++S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D + GN 
Sbjct: 182 INKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEVVGNT 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           TRVKVVKNK+A PFKQVEFDIMYGEG+S  GE++DL
Sbjct: 242 TRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDL 277


>gi|308237895|emb|CBK52094.1| RecA protein [Acidithiobacillus ferrooxidans]
 gi|308237907|emb|CBK52100.1| RecA protein [Acidithiobacillus ferrooxidans]
          Length = 278

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/278 (73%), Positives = 245/278 (88%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALG+GG P+GR+VEIYGPESSGKTTL LH IA  Q  GGT AF+DAEHALD  
Sbjct: 1   GSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLTLHAIASCQAAGGTAAFIDAEHALDPG 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA KLGVDL+NLLISQPDTGEQALEI DMLVRSGAVD+IVIDSVAALTP+AEIEGDMG+S
Sbjct: 61  YAHKLGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGDMGDS 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
             G+QARLMSQALRKLT++ISR+  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVR
Sbjct: 121 HVGLQARLMSQALRKLTANISRTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVR 180

Query: 231 LDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS 290
           LDIRR+G+IK  D + GN TRVKVVKNK+A PF++ EF I YGEGIS   EL+DLGVK  
Sbjct: 181 LDIRRIGAIKKSDEVVGNDTRVKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVKFD 240

Query: 291 IVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           IV+KSGAW+S++G+R+GQG++N++ +L+E+ E+A NIE
Sbjct: 241 IVEKSGAWYSYQGERIGQGKDNARQYLKEHPELAANIE 278


>gi|326773688|ref|ZP_08232971.1| recA protein [Actinomyces viscosus C505]
 gi|326636918|gb|EGE37821.1| recA protein [Actinomyces viscosus C505]
          Length = 413

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/318 (64%), Positives = 261/318 (82%), Gaps = 2/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+SKAL  AL+QI + +GKG++M+LG +      + V+ +GS+ LD+ALG+GG P+GRIV
Sbjct: 9   DRSKALATALAQIDKSFGKGSVMRLGDESR--PPVSVIPTGSVALDVALGVGGLPRGRIV 66

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD +YA+ LGVD+ NLL+SQPDTG
Sbjct: 67  EVYGPESSGKTTVALHAVASAQRAGGNAAFIDAEHALDPVYAKALGVDIDNLLVSQPDTG 126

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSG +DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 127 EQALEITDMLVRSGGLDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 186

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S +    +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLD+RR+G +KD D   GN+T
Sbjct: 187 SSTGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDVRRIGGLKDGDQPVGNRT 246

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFKQ EFDI+YG+GIS  G L+DLGV   +V KSGAWF++   +LGQG+
Sbjct: 247 RVKVVKNKMAPPFKQAEFDILYGQGISREGSLLDLGVDNGVVRKSGAWFTYGEDQLGQGK 306

Query: 311 ENSKIFLRENIEIAENIE 328
           EN++ FL++N ++A  IE
Sbjct: 307 ENARNFLKDNPQLAAEIE 324


>gi|42416899|gb|AAS16331.1| RecA [Mycobacterium wolinskyi]
          Length = 349

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/330 (62%), Positives = 270/330 (81%), Gaps = 2/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 7   DREKALELAMAQIDKNFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+T
Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG+
Sbjct: 245 RVKIVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           EN++ FL EN++ A  IE  +++  G+ AD
Sbjct: 305 ENARKFLLENVDAANEIEKRIKEKLGIGAD 334


>gi|326330053|ref|ZP_08196367.1| protein RecA [Nocardioidaceae bacterium Broad-1]
 gi|325952261|gb|EGD44287.1| protein RecA [Nocardioidaceae bacterium Broad-1]
          Length = 349

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/328 (63%), Positives = 272/328 (82%), Gaps = 2/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+AAL+ I+R +GKG++M+LG +      +EV+ +GS+ LD+ALG+GG P+GR+V
Sbjct: 5   DREKALDAALANIERQFGKGSVMRLGDE--TRAPLEVIPTGSIALDVALGLGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH++A +Q+ GG  AF+DAEHALD  YA+ LGVD   LL+SQPD+G
Sbjct: 63  EIYGPESSGKTTVALHSVASAQRAGGIVAFIDAEHALDPEYAKNLGVDTDALLVSQPDSG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+TS++
Sbjct: 123 EQALEIADMLIRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTSAL 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD   + GN+T
Sbjct: 183 NNSGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRIETLKDGTDMVGNRT 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDIMYG+GIS  G LID+GV+A +V K+GAW++++G +LGQG+
Sbjct: 243 RVKVVKNKVAPPFKQAEFDIMYGKGISREGGLIDVGVEAGLVRKAGAWYTYEGDQLGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338
           ENS+ FL++N ++A  +E  + +  G+V
Sbjct: 303 ENSRNFLKDNPDLANELEKRILEKLGVV 330


>gi|310830471|ref|YP_003965572.1| Protein recA [Paenibacillus polymyxa SC2]
 gi|309249938|gb|ADO59504.1| Protein recA [Paenibacillus polymyxa SC2]
          Length = 348

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/310 (66%), Positives = 262/310 (84%), Gaps = 2/310 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  ALE+AL QI++ +GKG+IM+LG + ++   IE VSSGSL LD+ALGIGGFPKGRIV
Sbjct: 4   DRKLALESALRQIEKQFGKGSIMKLGEKTNM--AIEAVSSGSLHLDLALGIGGFPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GG  AF+DAEHALD +YA  +GV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTVALHAVAEVQKAGGQAAFIDAEHALDPVYAANIGVNIDELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI + LVRSGAVD+I+IDSVAAL P+AE+EGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 122 EQGLEIAESLVRSGAVDVIIIDSVAALVPKAELEGDMGQSHVGLQARLMSQALRKLSGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK + +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+R++ ++K  D +  N+T
Sbjct: 182 NKSKTVAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRKIETVKKGDQVIANRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI +G+GI F+GEL+DLGV  +++DKSGAWFS++G+RLGQGR
Sbjct: 242 RVKVVKNKVSPPFKQAEFDIAFGKGIDFYGELLDLGVTHNLIDKSGAWFSYQGERLGQGR 301

Query: 311 ENSKIFLREN 320
           +N+K  L E+
Sbjct: 302 DNAKTALGEH 311


>gi|154488807|ref|ZP_02029656.1| hypothetical protein BIFADO_02115 [Bifidobacterium adolescentis
           L2-32]
 gi|154082944|gb|EDN81989.1| hypothetical protein BIFADO_02115 [Bifidobacterium adolescentis
           L2-32]
          Length = 380

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/336 (61%), Positives = 273/336 (81%), Gaps = 4/336 (1%)

Query: 5   KEMNIVD--KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
           K  N +D  +  AL+ AL+Q+++ +GKG+ M+LG +    + +EV+ +GSL LD+ALGIG
Sbjct: 14  KSANGIDPRRQAALDTALAQVEKSFGKGSAMRLGDRPE--QDVEVIPTGSLALDMALGIG 71

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G PKGRIVEIYGPESSGKTTLALH +A +QK GG  AF+DAEHALD +YARKLGVD  +L
Sbjct: 72  GLPKGRIVEIYGPESSGKTTLALHVVANAQKAGGVAAFIDAEHALDPVYARKLGVDTDSL 131

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           ++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQA
Sbjct: 132 IVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQA 191

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           LRK+T +++++    +FINQ+R KIGV FG+PETTTGG ALKFY+SVR+DIRR+ +IK+ 
Sbjct: 192 LRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRMDIRRIQTIKNG 251

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           D   GN+T+VKVVKNKMA PFK  EFD++YGEGIS  G ++D+ ++A++V KSG+WF+++
Sbjct: 252 DEAVGNRTKVKVVKNKMAPPFKTAEFDVLYGEGISKEGSVLDMALQANVVKKSGSWFTYE 311

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLV 338
           G +LGQGREN + FL++N E+ E IE+ ++   GL+
Sbjct: 312 GDQLGQGRENVRQFLKDNPELTEEIENKVKAAFGLI 347


>gi|240171187|ref|ZP_04749846.1| recombinase A [Mycobacterium kansasii ATCC 12478]
          Length = 349

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 204/329 (62%), Positives = 270/329 (82%), Gaps = 2/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 6   DREKALELAMAQIEKSYGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+T
Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK++ PFKQ EFDI+YG+GIS  G LID+GV    + KSGAWF+++G++LGQG+
Sbjct: 244 RVKIVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVDQGFIRKSGAWFTYEGEQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           EN++ FL EN ++A  IE  +++  G+ A
Sbjct: 304 ENARNFLMENADVANEIEKKIKEKLGIGA 332


>gi|212715625|ref|ZP_03323753.1| hypothetical protein BIFCAT_00524 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660992|gb|EEB21567.1| hypothetical protein BIFCAT_00524 [Bifidobacterium catenulatum DSM
           16992]
          Length = 394

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 209/353 (59%), Positives = 277/353 (78%), Gaps = 10/353 (2%)

Query: 5   KEMNIVD--KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
           K  N +D  +  AL+ AL+Q+++ +GKG+ M+LG +    + +EV+ +GSL LD+ALGIG
Sbjct: 14  KSANGIDPRRQAALDTALAQVEKSFGKGSAMRLGDRPE--QDVEVIPTGSLALDMALGIG 71

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G PKGRIVEIYGPESSGKTTLALH +A +QK+GG  AF+DAEHALD +YARKLGVD  +L
Sbjct: 72  GLPKGRIVEIYGPESSGKTTLALHVVANAQKSGGVAAFIDAEHALDPVYARKLGVDTDSL 131

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           ++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQA
Sbjct: 132 IVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQA 191

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           LRK+T +++++    +FINQ+R KIGV FG+PETTTGG ALKFYSSVR+DIRR+ +IK+ 
Sbjct: 192 LRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYSSVRMDIRRIQTIKNG 251

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           D   GN+T+VKVVKNKMA PFK  EFD++YGEGIS  G ++D+ ++ ++V KSG+WF++ 
Sbjct: 252 DEAVGNRTKVKVVKNKMAPPFKTAEFDVLYGEGISKEGSVLDMALQVNVVKKSGSWFTYD 311

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           G +LGQGREN + FL++N E+ E IE+ ++   GL+      EP     +D D
Sbjct: 312 GDQLGQGRENVRQFLKDNPELTEEIENKVKAEFGLI------EPTDQFAEDGD 358


>gi|227875221|ref|ZP_03993363.1| recombination protein A [Mobiluncus mulieris ATCC 35243]
 gi|269978112|ref|ZP_06185062.1| protein RecA [Mobiluncus mulieris 28-1]
 gi|306818483|ref|ZP_07452206.1| recombination protein A [Mobiluncus mulieris ATCC 35239]
 gi|307700702|ref|ZP_07637727.1| RecA protein [Mobiluncus mulieris FB024-16]
 gi|227844126|gb|EEJ54293.1| recombination protein A [Mobiluncus mulieris ATCC 35243]
 gi|269933621|gb|EEZ90205.1| protein RecA [Mobiluncus mulieris 28-1]
 gi|304648656|gb|EFM45958.1| recombination protein A [Mobiluncus mulieris ATCC 35239]
 gi|307613697|gb|EFN92941.1| RecA protein [Mobiluncus mulieris FB024-16]
          Length = 372

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 210/330 (63%), Positives = 266/330 (80%), Gaps = 1/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D++KALE AL QI + +GKG++M+LG   +  + I V+ +GS+ LD+ALGIGG P+GRIV
Sbjct: 5   DRAKALETALGQIDKQFGKGSVMRLGDNAA-GKDIAVIPTGSVALDVALGIGGLPRGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +QK GG  AF+DAEHALD +YA+KLGVD+ NLL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQKAGGNAAFIDAEHALDPVYAQKLGVDIDNLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSG +DIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGGLDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKITGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S +    +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+T
Sbjct: 184 SATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETMKDGTNPIGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R K+VKNKMA PF+Q EFDIMYGEGIS  G LIDLGV   IV KSG+WF++   +LGQG+
Sbjct: 244 RAKIVKNKMAPPFRQAEFDIMYGEGISREGGLIDLGVDCDIVTKSGSWFTYGEIQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           EN++ FLR+N E+A  +E+ +    G+  D
Sbjct: 304 ENARKFLRDNPELAAELENKILIKMGVRPD 333


>gi|42416897|gb|AAS16330.1| RecA [Mycobacterium neworleansense]
          Length = 351

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/329 (62%), Positives = 269/329 (81%), Gaps = 2/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 7   DREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRVV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+T
Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG GIS  G LID+GV+   + KSG+WF+++G++LGQG+
Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGHGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           EN++ FL EN+++A  IE  +++  G+ A
Sbjct: 305 ENARKFLLENVDVANEIEKKIKEKLGIGA 333


>gi|311744185|ref|ZP_07717990.1| recombination protein A [Aeromicrobium marinum DSM 15272]
 gi|311312540|gb|EFQ82452.1| recombination protein A [Aeromicrobium marinum DSM 15272]
          Length = 361

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/327 (62%), Positives = 268/327 (81%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +++KA++ A++QI R +GKGA+M+LG +G     I+V+ +G+  LD+ALGIGG P+GR+V
Sbjct: 20  ERTKAIDNAIAQIDRAHGKGAVMRLGERGRT--KIDVIPTGATALDVALGIGGLPRGRVV 77

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +QK+GG  AF+DAEHALD  YAR LGVD   LLISQPD+G
Sbjct: 78  EIYGPESSGKTTVALHAVANAQKSGGVAAFIDAEHALDPEYARALGVDTDALLISQPDSG 137

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DIIVIDSVAAL PRAEI+G+MG+S  G+QARLMSQALRK+T +I
Sbjct: 138 EQALEIADMLIRSGALDIIVIDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKMTGAI 197

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD   + GN+T
Sbjct: 198 NGSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDMVGNRT 257

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDIMYG+GIS  G LID+GV   +V K+GAW++++G +LGQG+
Sbjct: 258 RVKVVKNKLAPPFKQAEFDIMYGKGISREGSLIDVGVDCGLVRKAGAWYTYEGDQLGQGK 317

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN++ FL +N ++AE +E  ++   G+
Sbjct: 318 ENARQFLHDNPDLAEELEKRIKDQMGV 344


>gi|29119659|emb|CAD79373.1| RecA protein [Burkholderia sacchari]
          Length = 301

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 215/300 (71%), Positives = 262/300 (87%), Gaps = 1/300 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRLGD-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPXAEIEGEMGDSLPGLQARLMSQALRKLTXTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIR +GSIK  D + G++T
Sbjct: 182 KKTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRXIGSIKKNDEVIGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQG+
Sbjct: 242 RVKVVKNKVSPPFREAVFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQGK 301


>gi|227549080|ref|ZP_03979129.1| recombination protein RecA [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227078862|gb|EEI16825.1| recombination protein RecA [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 382

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 217/358 (60%), Positives = 279/358 (77%), Gaps = 8/358 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL+ I++ +GKGA+M+LG +      I+V+SSG+  +D+ALGIGGFP+GR+V
Sbjct: 14  DRQNALDAALAMIEKDFGKGAVMRLGDENR--PPIQVISSGNTAIDVALGIGGFPRGRVV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA +Q+ GG  AF+DAEHALD  YARKLGVD  NLL+SQPDTG
Sbjct: 72  EIYGPESSGKTTVALHAIASAQRAGGIAAFIDAEHALDPDYARKLGVDTDNLLVSQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DIIVIDSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 132 EQALEIADMLVRSGAIDIIVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR D+RR+ ++KD     GN+T
Sbjct: 192 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDVRRIQTLKDGQDSIGNRT 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK++ PFK  EFDIMYGEGIS    +ID+GV   IV KSG+WF+++G +LGQG+
Sbjct: 252 RLKVVKNKVSPPFKIAEFDIMYGEGISRESSIIDMGVDNGIVKKSGSWFTYEGDQLGQGK 311

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA-----DSLLQEPAINTKDDADKDDTDNVE 363
           E +++FL++N+++A  IE  + Q  G+ A     D L  +P ++   + D DD D  E
Sbjct: 312 EKARLFLKDNVDLANEIEDKIFQKLGVGAYAGNGDELTDDP-VDMVPNIDFDDDDANE 368


>gi|160858113|emb|CAP18002.1| DNA recombinase [Burkholderia lata]
          Length = 324

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/278 (73%), Positives = 248/278 (89%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAE
Sbjct: 20  IQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAE 79

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIE
Sbjct: 80  HALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIE 139

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 140 GEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALK 199

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+ID
Sbjct: 200 FYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIID 259

Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           LGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 260 LGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 297


>gi|184201230|ref|YP_001855437.1| RecA protein [Kocuria rhizophila DC2201]
 gi|183581460|dbj|BAG29931.1| RecA protein [Kocuria rhizophila DC2201]
          Length = 368

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/318 (65%), Positives = 261/318 (82%), Gaps = 2/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+  LSQI + YGKG++M+LG + +    IE + +GS+ LD+ALGIGGFP+GR+V
Sbjct: 5   DRQKALDTVLSQIDKNYGKGSVMRLGDRPAT--KIETIPTGSIALDVALGIGGFPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A  QK+GG  AF+DAEHALD  YA KLGVD  NLL+SQPDTG
Sbjct: 63  EIYGPESSGKTTVALHAVASVQKSGGIAAFIDAEHALDPAYAEKLGVDTDNLLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLV SG++DI+VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T  +
Sbjct: 123 EQALEIMDMLVGSGSIDIVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGRL 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S +    +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+T
Sbjct: 183 SHTNTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRVDVRRIETLKDGANPVGNRT 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R K+VKNKMA PFKQ EFDI+YG+GIS  G LID+GV+  IV KSGAWF+++G +LGQG+
Sbjct: 243 RAKIVKNKMAPPFKQAEFDILYGQGISIEGGLIDMGVEHGIVKKSGAWFTYEGDQLGQGK 302

Query: 311 ENSKIFLRENIEIAENIE 328
           ENS+ FL++N E+A+ IE
Sbjct: 303 ENSRRFLKDNPELAQEIE 320


>gi|119026042|ref|YP_909887.1| recombinase A [Bifidobacterium adolescentis ATCC 15703]
 gi|118765626|dbj|BAF39805.1| protein recA (Recombinase A) [Bifidobacterium adolescentis ATCC
           15703]
          Length = 394

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/336 (61%), Positives = 273/336 (81%), Gaps = 4/336 (1%)

Query: 5   KEMNIVD--KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
           K  N +D  +  AL+ AL+Q+++ +GKG+ M+LG +    + +EV+ +GSL LD+ALGIG
Sbjct: 28  KSANGIDPRRQAALDTALAQVEKSFGKGSAMRLGDRPE--QDVEVIPTGSLALDMALGIG 85

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G PKGRIVEIYGPESSGKTTLALH +A +QK GG  AF+DAEHALD +YARKLGVD  +L
Sbjct: 86  GLPKGRIVEIYGPESSGKTTLALHVVANAQKAGGVAAFIDAEHALDPVYARKLGVDTDSL 145

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           ++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQA
Sbjct: 146 IVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQA 205

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           LRK+T +++++    +FINQ+R KIGV FG+PETTTGG ALKFY+SVR+DIRR+ +IK+ 
Sbjct: 206 LRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRMDIRRIQTIKNG 265

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           D   GN+T+VKVVKNKMA PFK  EFD++YGEGIS  G ++D+ ++A++V KSG+WF+++
Sbjct: 266 DEAVGNRTKVKVVKNKMAPPFKTAEFDVLYGEGISKEGSVLDMALQANVVKKSGSWFTYE 325

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLV 338
           G +LGQGREN + FL++N E+ E IE+ ++   GL+
Sbjct: 326 GDQLGQGRENVRQFLKDNPELTEEIENKVKAAFGLI 361


>gi|42416865|gb|AAS16314.1| RecA [Mycobacterium houstonense]
 gi|42416869|gb|AAS16316.1| RecA [Mycobacterium farcinogenes]
 gi|42416879|gb|AAS16321.1| RecA [Mycobacterium senegalense]
          Length = 349

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/342 (60%), Positives = 274/342 (80%), Gaps = 8/342 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 7   DREKALELAMAQIDKNFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+T
Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG+
Sbjct: 245 RVKIVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL------VADSLLQEP 346
           EN++ FL EN+++A  IE  +++  G+       AD +L  P
Sbjct: 305 ENARKFLLENVDVANEIEKKIKEKLGIGAVVTAEADDVLPAP 346


>gi|320105928|ref|YP_004181518.1| recA protein [Terriglobus saanensis SP1PR4]
 gi|319924449|gb|ADV81524.1| recA protein [Terriglobus saanensis SP1PR4]
          Length = 360

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/343 (60%), Positives = 280/343 (81%), Gaps = 1/343 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KA+E AL+ I++ +GKG+IM+LG++ +I   I V+S+GS+  D+ALG+GG P+GR++
Sbjct: 4   DRGKAIELALAGIEKQFGKGSIMRLGAKDAIVP-ISVISTGSISFDLALGVGGVPRGRVI 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTT+ L  IA++Q+ GG  AFVDAEHALD +YARKLGVD  NLLISQPD G
Sbjct: 63  EIFGPESSGKTTITLQIIAEAQRAGGLAAFVDAEHALDPVYARKLGVDTDNLLISQPDYG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ LVRSGA+DI+V+DSVAAL P+AE++G+MG+S  G+ ARLMSQALRKLT ++
Sbjct: 123 EQALEITEALVRSGAIDILVVDSVAALVPKAELDGEMGDSHVGLHARLMSQALRKLTGTV 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S+  L+FINQ+R KIGVMFGSPETTTGG ALKFYSSVR+DIRR+G++K+ D + G++T
Sbjct: 183 SKSRTSLIFINQIREKIGVMFGSPETTTGGRALKFYSSVRIDIRRIGAVKEGDVVVGSRT 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           + K+VKNK+A+PF++ EFDI+YGEGIS  G+++DL V  +IVDKSGAW+S++G+R+GQGR
Sbjct: 243 KTKIVKNKVAAPFREAEFDILYGEGISREGDVLDLAVVHNIVDKSGAWYSYQGERIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           EN + FL+ N +I + ++  LR   G+ A S+   P     +D
Sbjct: 303 ENVRGFLKLNPDIFDRMDQELRAKLGIGAASITAAPVPEAPED 345


>gi|42416875|gb|AAS16319.1| RecA [Mycobacterium chelonae]
          Length = 346

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/329 (62%), Positives = 269/329 (81%), Gaps = 2/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE AL+QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 6   DREKALELALAQIDKSFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+ +IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLVRSGAISLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD     GN+T
Sbjct: 184 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG+
Sbjct: 244 RVKVVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           EN++ FL EN+++A  IE  +++  G+ A
Sbjct: 304 ENARNFLLENVDVANEIEKKIKEKLGIGA 332


>gi|312139381|ref|YP_004006717.1| recombinase a [Rhodococcus equi 103S]
 gi|325672738|ref|ZP_08152434.1| recombination protein A [Rhodococcus equi ATCC 33707]
 gi|311888720|emb|CBH48032.1| recombinase A [Rhodococcus equi 103S]
 gi|325556615|gb|EGD26281.1| recombination protein A [Rhodococcus equi ATCC 33707]
          Length = 345

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 212/348 (60%), Positives = 274/348 (78%), Gaps = 10/348 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE AL+QI + +GKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 7   DRDKALELALAQIDKSFGKGSVMRLGEEAR--QPIAVIPTGSIALDVALGIGGLPRGRVV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YARKLGVD   LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQANGGVAAFIDAEHALDPEYARKLGVDTDALLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD     GN+T
Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+W++++G +LGQG+
Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISKEGSLIDMGVEHGFIRKSGSWYTYEGDQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           EN++ FL EN +I + IE  +++  G+         A+ T +DA++ D
Sbjct: 305 ENARKFLLENTDIRDEIEKKIKEKLGI--------GAVLTDEDAEQAD 344


>gi|82701154|ref|YP_410720.1| recombinase A [Nitrosospira multiformis ATCC 25196]
 gi|123768338|sp|Q2YD43|RECA_NITMU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|82409219|gb|ABB73328.1| RecA protein [Nitrosospira multiformis ATCC 25196]
          Length = 339

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 222/337 (65%), Positives = 285/337 (84%), Gaps = 4/337 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++SKAL AALSQI++ +GKG+IM+LG+   + + ++V+S+GSLGLDIALG+GG P+GRIV
Sbjct: 4   NRSKALAAALSQIEKQFGKGSIMRLGAS-DVGKDVQVISTGSLGLDIALGVGGLPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ Q+ GGT AF+DAEHALDS YA+KLGV++++LLISQPD G
Sbjct: 63  EIYGPESSGKTTLTLQVIAEMQRMGGTAAFIDAEHALDSQYAQKLGVNVQDLLISQPDNG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG++D++V+DSVAALTPRAEIEG+MGE   G+ ARLMSQALRKLT +I
Sbjct: 123 EQALEIADMLVRSGSIDVVVVDSVAALTPRAEIEGEMGEPQMGLHARLMSQALRKLTGNI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR GSIK  + + G++T
Sbjct: 183 KRSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGSIKKGEEVIGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EFDI+YGEGIS  GE+I+LGV+  ++DKSGAW+++KG ++GQG+
Sbjct: 243 RVKVVKNKVAPPFRQAEFDILYGEGISREGEIIELGVQHKLIDKSGAWYAYKGDKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           +N + +L+E+ +IA  IES +R   G+   S   EPA
Sbjct: 303 DNVREYLKEHRDIAMEIESKIRAAVGV---SNPAEPA 336


>gi|118464179|ref|YP_882804.1| recombinase A [Mycobacterium avium 104]
 gi|254776066|ref|ZP_05217582.1| recombinase A [Mycobacterium avium subsp. avium ATCC 25291]
 gi|60392996|sp|P62219|RECA_MYCPA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166220656|sp|A0QIR6|RECA_MYCA1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|118165466|gb|ABK66363.1| protein RecA [Mycobacterium avium 104]
          Length = 350

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 204/329 (62%), Positives = 269/329 (81%), Gaps = 2/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 6   DREKALELAMAQIEKSYGKGSVMRLGDE--MRQPISVIPTGSIALDVALGIGGLPRGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGALDILVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+T
Sbjct: 184 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK++ PFKQ EFDI+YG GIS  G LID+GV    + KSG+WF+++G++LGQG+
Sbjct: 244 RVKIVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGSWFTYEGEQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           EN++ FL EN E+A  IE  +++  G+ A
Sbjct: 304 ENARTFLMENDEVANEIEKKIKEKLGIGA 332


>gi|289642433|ref|ZP_06474579.1| recA protein [Frankia symbiont of Datisca glomerata]
 gi|289507778|gb|EFD28731.1| recA protein [Frankia symbiont of Datisca glomerata]
          Length = 345

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 212/341 (62%), Positives = 271/341 (79%), Gaps = 3/341 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M  +D+ KALE AL+QI + +GKG++M+LG        ++V+ +GS+ LD+ALGIGG P+
Sbjct: 1   MAGLDREKALENALAQIDKQFGKGSVMRLGD--DTRPPVQVIPTGSIALDVALGIGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA KLGV+   LL+SQ
Sbjct: 59  GRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAAKLGVNTDALLVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL
Sbjct: 119 PDTGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T ++S S    +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     
Sbjct: 179 TGALSHSGTTAIFINQLREKVGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNKMA PF+  EFDI+YG GIS  G LID+GV+  I+ KSGAW+++ G +L
Sbjct: 239 GNRTRVKVVKNKMAPPFRTAEFDIVYGGGISREGSLIDMGVEQGIIRKSGAWYTYDGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           GQG+EN++ F+R+N +IA+ IE  +++  GLV  +L  +PA
Sbjct: 299 GQGKENARSFMRDNPDIADEIEKRIKEKLGLVP-TLDVDPA 338


>gi|161595867|gb|ABX73527.1| recombination protein RecA [Neisseria meningitidis 053442]
          Length = 323

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 202/295 (68%), Positives = 252/295 (85%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +EV+S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKTTL L  +AQ QK GG CAFVD
Sbjct: 10  ENLEVISTGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVD 69

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHA D +YARKLGV ++ L +SQPDTGEQALEI D LVRSG +D++V+DSVAAL P+AE
Sbjct: 70  AEHAFDPVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGIDMVVVDSVAALVPKAE 129

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           IEGDMG+S  G+QARLMSQALRKLT  I ++  ++VFINQ+RMKIGVMFGSPETTTGGNA
Sbjct: 130 IEGDMGDSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNA 189

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LKFYSSVRLDIRR GSIK  + + GN+TRVKV+KNK+A PF+Q EFDI+YGEGIS+ GEL
Sbjct: 190 LKFYSSVRLDIRRTGSIKKGEEVLGNETRVKVIKNKVAPPFRQAEFDILYGEGISWEGEL 249

Query: 283 IDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           ID+GVK  I++KSGAW+S+ G ++GQG++N +++L+EN EIA+ I++ +R   G+
Sbjct: 250 IDIGVKNDIINKSGAWYSYNGAKIGQGKDNVRVWLKENPEIADEIDAKIRALNGV 304


>gi|310815944|ref|YP_003963908.1| recombinase A [Ketogulonicigenium vulgare Y25]
 gi|308754679|gb|ADO42608.1| recombinase A [Ketogulonicigenium vulgare Y25]
          Length = 300

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/279 (74%), Positives = 243/279 (87%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           +GIGG PKGRI+EI+GPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YA+KLGV+
Sbjct: 1   MGIGGLPKGRIIEIFGPESSGKTTLTLHAVAEEQKKGGVCAFVDAEHALDPSYAKKLGVN 60

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           L  LLISQPDTGEQALEI D LVRSGAV ++V+DSVAALTP++EIEGDMG+S  G+ ARL
Sbjct: 61  LDELLISQPDTGEQALEIVDTLVRSGAVSMVVVDSVAALTPKSEIEGDMGDSSVGVHARL 120

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQA+RKLT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+
Sbjct: 121 MSQAMRKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGA 180

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IKD+D + GN TRVKVVKNK+A PFKQVEFDIMYGEGIS  GE+IDLGVKA +V+KSG+W
Sbjct: 181 IKDRDEVVGNSTRVKVVKNKVAPPFKQVEFDIMYGEGISKRGEIIDLGVKAGVVEKSGSW 240

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           FS+  QR+GQGREN+K FLR+N  I++ IE  +R   GL
Sbjct: 241 FSYGDQRIGQGRENAKQFLRDNPAISDEIEGKIRAMNGL 279


>gi|324997718|ref|ZP_08118830.1| recombinase A [Pseudonocardia sp. P1]
          Length = 350

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/333 (61%), Positives = 270/333 (81%), Gaps = 2/333 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+  D+ KALE AL+QI++ +GKG++M+LG Q  +   I  +S+GS+ LD+ALG+GG P+
Sbjct: 1   MSAPDRGKALELALAQIEKNHGKGSVMRLGDQTRV--PISAISTGSIALDVALGVGGIPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTT+ALH +A +Q  GG  AFVDAEHALD  YA+ LGVD   LL+SQ
Sbjct: 59  GRVVEIYGPESSGKTTVALHAVASAQAAGGVAAFVDAEHALDPEYAKALGVDTDELLVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI DML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDTGEQALEIADMLIRSGALDVIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T ++S S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD   + 
Sbjct: 179 TGALSTSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDIRRIETLKDGTDMV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G++TRVKVVKNK+A PFKQ EFD++YG GIS  G LID+GV+  I+ KSGAW++++G ++
Sbjct: 239 GSRTRVKVVKNKVAPPFKQAEFDVLYGVGISKEGSLIDVGVEQGIIRKSGAWYTYEGDQM 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           GQG+EN++ FL+EN ++A  +E  +++  G+ A
Sbjct: 299 GQGKENARKFLKENPDVAAEVEKRIKEKLGIGA 331


>gi|256390779|ref|YP_003112343.1| recA protein [Catenulispora acidiphila DSM 44928]
 gi|256357005|gb|ACU70502.1| recA protein [Catenulispora acidiphila DSM 44928]
          Length = 383

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 209/338 (61%), Positives = 271/338 (80%), Gaps = 4/338 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KAL+AAL+QI+R +GKG++M+LG++    + I+++ +GS+ LD+ALGIGG P+GR+
Sbjct: 6   TDREKALDAALAQIERNFGKGSVMRLGARS--VQPIDIIPTGSIALDVALGIGGLPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +QK GG  AF+DAEHALD  YAR +GVD   LLISQPDT
Sbjct: 64  VEIYGPESSGKTTIALHAVANAQKAGGQAAFIDAEHALDPDYARNIGVDTDLLLISQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D L+RSGA+DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  
Sbjct: 124 GEQALEIADTLIRSGALDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGV 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I ++   ++FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD      N+
Sbjct: 184 IHQTNTTVIFINQLREKVGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTEAVANR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQ EFD+++G GIS  G LID+GV+   V K+GAWF++   +LGQG
Sbjct: 244 TRVKVVKNKVAPPFKQAEFDVVFGSGISREGSLIDMGVEHGFVKKAGAWFTYSEGQLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           REN++ FL+EN ++A+ +E L+++  G+     L EPA
Sbjct: 304 RENARRFLKENPDVADGLEKLIKEKLGI--GPKLDEPA 339


>gi|257056758|ref|YP_003134590.1| protein RecA [Saccharomonospora viridis DSM 43017]
 gi|256586630|gb|ACU97763.1| protein RecA [Saccharomonospora viridis DSM 43017]
          Length = 345

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/327 (63%), Positives = 265/327 (81%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+ AL+QI + +GKG++M+LG +      +EV+ +G++ LDIALGIGG P+GRIV
Sbjct: 6   DKGKALDLALAQIDKQFGKGSVMRLGEESR--PPVEVIPTGAIALDIALGIGGLPRGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +QK GG  AF+DAEHALD  YA+ LGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQKAGGIAAFIDAEHALDPEYAKALGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S    +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+T
Sbjct: 184 HNSGTTAIFINQLREKVGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGGEPVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDI+YG G+S  G LID+GV   IV KSGAW++++G +LGQG+
Sbjct: 244 RVKVVKNKVAPPFKQAEFDILYGVGVSREGSLIDMGVDQGIVRKSGAWYTYEGDQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN++ FLREN ++A  IE  +++  G+
Sbjct: 304 ENARRFLRENPDVANEIEKKIKEKLGI 330


>gi|12084113|pdb|1G18|A Chain A, Reca-Adp-Alf4 Complex
 gi|12084114|pdb|1G19|A Chain A, Structure Of Reca Protein
 gi|28948652|pdb|1MO3|A Chain A, Reca-Adp Complex
 gi|28948653|pdb|1MO4|A Chain A, Reca-Atp-Gamma-S Complex
 gi|28948654|pdb|1MO5|A Chain A, Reca-Atp-Gamma-S-Mg Complex
 gi|28948655|pdb|1MO6|A Chain A, Reca-Datp-Mg Complex
          Length = 350

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/329 (62%), Positives = 270/329 (82%), Gaps = 2/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI++ YGKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 6   DREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD  +  GN+T
Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK  +PFKQ EFDI+YG+GIS  G LID+GV   ++ KSGAWF+++G++LGQG+
Sbjct: 244 RVKVVKNKCLAPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           EN++ FL EN ++A+ IE  +++  G+ A
Sbjct: 304 ENARNFLVENADVADEIEKKIKEKLGIGA 332


>gi|283456289|ref|YP_003360853.1| RecA protein [Bifidobacterium dentium Bd1]
 gi|306822508|ref|ZP_07455886.1| recombination protein A [Bifidobacterium dentium ATCC 27679]
 gi|309801448|ref|ZP_07695575.1| RecA protein [Bifidobacterium dentium JCVIHMP022]
 gi|283102923|gb|ADB10029.1| RecA protein [Bifidobacterium dentium Bd1]
 gi|304554053|gb|EFM41962.1| recombination protein A [Bifidobacterium dentium ATCC 27679]
 gi|308221963|gb|EFO78248.1| RecA protein [Bifidobacterium dentium JCVIHMP022]
          Length = 386

 Score =  438 bits (1127), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/348 (59%), Positives = 274/348 (78%), Gaps = 8/348 (2%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  ALE AL+Q+++ +GKG+ M+LG +    + +EV+ +GSL LD+ALGIGG PKGRIVE
Sbjct: 24  RQAALETALAQVEKNFGKGSAMRLGDRPE--QDVEVIPTGSLALDMALGIGGLPKGRIVE 81

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH +A +QK GG  AF+DAEHALD +YARKLGVD  +L++SQPD GE
Sbjct: 82  IYGPESSGKTTLALHVVANAQKKGGVAAFIDAEHALDPVYARKLGVDTDSLIVSQPDNGE 141

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T +++
Sbjct: 142 QALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALA 201

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGV FG+PETTTGG ALKFY+SVR+DIRR+ +IK+ D   GN+TR
Sbjct: 202 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRMDIRRIQTIKNGDEAVGNRTR 261

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNKMA PFK  EFD++YGEGIS  G ++D+ ++ ++V KSG+WF++ G +LGQGRE
Sbjct: 262 VKVVKNKMAPPFKSAEFDVLYGEGISKEGSVLDMALQVNVVKKSGSWFTYDGDQLGQGRE 321

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           N + FL++N  + E IE+ ++   GL+      EP     +D D ++T
Sbjct: 322 NVRQFLKDNPGVTEEIENRVKAAFGLI------EPTDQFAEDGDGNET 363


>gi|320534660|ref|ZP_08035104.1| protein RecA [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133135|gb|EFW25639.1| protein RecA [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 412

 Score =  438 bits (1127), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 204/318 (64%), Positives = 260/318 (81%), Gaps = 2/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+SKAL  AL+QI + +GKG++M+LG        + V+ +GS+ LD+ALG+GG P+GRI+
Sbjct: 9   DRSKALATALAQIDKSFGKGSVMRLGDD--TRPPVSVIPTGSVALDVALGVGGLPRGRII 66

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD +YA+ LGVD+ NLL+SQPDTG
Sbjct: 67  EVYGPESSGKTTVALHAVASAQRAGGNAAFIDAEHALDPVYAKALGVDIDNLLVSQPDTG 126

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSG +DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 127 EQALEITDMLVRSGGLDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 186

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S +    +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLD+RR+G +KD D   GN+T
Sbjct: 187 SSTGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDVRRIGGLKDGDQPVGNRT 246

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFKQ EFDI+YG+GIS  G L+DLGV   +V KSGAWF++   +LGQG+
Sbjct: 247 RVKVVKNKMAPPFKQAEFDILYGQGISREGSLLDLGVDNGVVRKSGAWFTYGEDQLGQGK 306

Query: 311 ENSKIFLRENIEIAENIE 328
           EN++ FL++N ++A  IE
Sbjct: 307 ENARNFLKDNPQLAAEIE 324


>gi|146305465|ref|YP_001185930.1| recA protein [Pseudomonas mendocina ymp]
 gi|145573666|gb|ABP83198.1| recA protein [Pseudomonas mendocina ymp]
          Length = 348

 Score =  438 bits (1127), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/322 (64%), Positives = 270/322 (83%), Gaps = 2/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI++ +GKG+IM+LGS  ++   I+V+S+GSLGLDIALG+GG P+GRIVE
Sbjct: 5   KSKALEAALSQIEKQFGKGSIMRLGSDRTM--DIDVISTGSLGLDIALGVGGLPRGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL L  IA++Q+ G TCAFVDAEHALD IYA KLGV++  LL SQPDTGE
Sbjct: 63  IYGPESSGKTTLTLSVIAEAQRQGLTCAFVDAEHALDPIYAAKLGVNIDELLCSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D+L RSGAV++IV+DSVAAL P+AEIEG++G+S  G+ AR+MSQA+RK+T ++ 
Sbjct: 123 QALEIVDILTRSGAVNLIVVDSVAALVPKAEIEGEIGDSHVGLAARMMSQAMRKITGNLK 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
            S  + +FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ + + G++TR
Sbjct: 183 NSNTMCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGEEVVGSETR 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A+PF+Q EF I+YG+GIS  GE++DL V  + V+KSGAW+SF+G ++GQG+ 
Sbjct: 243 VKVVKNKVAAPFRQAEFQIVYGQGISKAGEIVDLAVANNFVEKSGAWYSFEGNKIGQGKA 302

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
           N+  +L EN    + +E ++R+
Sbjct: 303 NTMKWLLENKPTMDKLEGMIRE 324


>gi|311748339|ref|ZP_07722124.1| protein RecA [Algoriphagus sp. PR1]
 gi|126576848|gb|EAZ81096.1| protein RecA [Algoriphagus sp. PR1]
          Length = 339

 Score =  438 bits (1127), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 212/335 (63%), Positives = 270/335 (80%), Gaps = 3/335 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  +K KAL+  + ++++ YGKG +M+L S   + + I  +S+GSLGLD+ALG+GG P+G
Sbjct: 3   NNAEKLKALQLTIDKLEKTYGKGTVMKL-SDNKVLD-IPAISTGSLGLDMALGVGGIPRG 60

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R++EIYGPESSGKTTL +H IA++QK GG  AFVDAEHA D  YA KLG+D +NLLISQP
Sbjct: 61  RVIEIYGPESSGKTTLTMHCIAEAQKAGGLAAFVDAEHAFDKTYAEKLGIDTENLLISQP 120

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI + L+RSGA+DIIVIDSVAAL P+ E+EGDMG+S  G+QARLMSQALRKLT
Sbjct: 121 DNGEQALEIAEHLIRSGAIDIIVIDSVAALVPKGELEGDMGDSKMGLQARLMSQALRKLT 180

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK-DSIT 246
            +I+++ C  +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR+G IK+  DSI 
Sbjct: 181 GAINKTGCSCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGQIKESADSIL 240

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFK VEFDIMYG+GIS  GE+IDLGV+  IV K+G+WFS+ G++L
Sbjct: 241 GNRTRVKVVKNKVAPPFKVVEFDIMYGQGISKVGEIIDLGVEFDIVKKAGSWFSYNGEKL 300

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           GQGR+  K  L +N E+ E +E  ++  +GL A +
Sbjct: 301 GQGRDAVKNLLLDNPELMEELEVKIKAASGLNAPA 335


>gi|25028405|ref|NP_738459.1| recombinase A [Corynebacterium efficiens YS-314]
 gi|30173308|sp|Q8FPD3|RECA_COREF RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|23493690|dbj|BAC18659.1| recombination protein RecA [Corynebacterium efficiens YS-314]
          Length = 386

 Score =  438 bits (1127), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 213/341 (62%), Positives = 270/341 (79%), Gaps = 7/341 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+AAL+ I++ +GKGA+M+LG +      I+V+SSG+  LDIALGIGGFP+GRIV
Sbjct: 15  DRQKALDAALALIEKDFGKGAVMRLGDENR--PPIQVISSGNTALDIALGIGGFPRGRIV 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IAQ+QK GG  AF+DAEHALD  YARKLGVD   LL+SQPDTG
Sbjct: 73  EVYGPESSGKTTVALHAIAQAQKAGGIAAFIDAEHALDPDYARKLGVDTDALLVSQPDTG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DI+VIDSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 133 EQALEIADMLVRSGAIDILVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+T
Sbjct: 193 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRIDVRRIQTLKDGQDAIGNRT 252

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R K+VKNK++ PFK  EFDI+YGEGIS    +IDL V   IV KSG+WF+++G +LGQG+
Sbjct: 253 RAKIVKNKVSPPFKIAEFDIIYGEGISRESSIIDLAVDNGIVKKSGSWFTYEGDQLGQGK 312

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL-----VADSLLQEP 346
           E +++FL+E  E+A+ IE  + +  G+      AD L  +P
Sbjct: 313 EKARLFLKETPELADEIEEKIFRKLGVGKFAQTADELTDDP 353


>gi|302525487|ref|ZP_07277829.1| recA protein [Streptomyces sp. AA4]
 gi|302434382|gb|EFL06198.1| recA protein [Streptomyces sp. AA4]
          Length = 347

 Score =  438 bits (1127), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/327 (63%), Positives = 265/327 (81%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KALE AL+QI + YGKG++M+LG +      I V+ +G++ LD+ALGIGG P+GR+V
Sbjct: 6   DKDKALELALAQIDKQYGKGSVMRLGEESR--PPIAVIPTGAIALDVALGIGGLPRGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA++LGVD   LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPEYAKRLGVDTDALLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S S    +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+T
Sbjct: 184 SNSGTTAIFINQLREKVGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGGEPVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDI+YG G+S  G LID+GV   I+ KSGAW++++G +LGQG+
Sbjct: 244 RVKVVKNKVAPPFKQAEFDILYGMGVSREGSLIDMGVDQGILRKSGAWYTYEGDQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN++ FLR+N +IA  IE  +++  G+
Sbjct: 304 ENARRFLRDNPDIANEIEKRIKEKLGI 330


>gi|145593972|ref|YP_001158269.1| recombinase A [Salinispora tropica CNB-440]
 gi|189039606|sp|A4X4U1|RECA_SALTO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|145303309|gb|ABP53891.1| recA protein [Salinispora tropica CNB-440]
          Length = 348

 Score =  438 bits (1127), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/320 (64%), Positives = 264/320 (82%), Gaps = 2/320 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+ +AL+ AL+QI + +GKG++M+LG +  +     VV +GS+ LD+ALG+GG P+GR
Sbjct: 4   VPDRERALDLALAQIDKQFGKGSVMRLGERPVVETA--VVPTGSIALDVALGVGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++E+YGPESSGKTT+ALH +A +Q++GG  AFVDAEHALD  YAR LGVD   LL+SQPD
Sbjct: 62  VIEVYGPESSGKTTVALHAVANAQRSGGIAAFVDAEHALDPEYARALGVDTDALLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T 
Sbjct: 122 TGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            +S +    VFINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ S+KD   + GN
Sbjct: 182 VLSHTGTTAVFINQLREKIGVMFGSPETTTGGRALKFYASVRLDVRRIESLKDGTDVVGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A+PFKQ EFDIMYG+GIS  G LID+GV+ +I+ KSGAW++++G +LGQ
Sbjct: 242 RTRVKVVKNKVAAPFKQAEFDIMYGKGISREGSLIDVGVEQAIIRKSGAWYTYEGDQLGQ 301

Query: 309 GRENSKIFLRENIEIAENIE 328
           G+E ++ FLREN ++A  IE
Sbjct: 302 GKEKAREFLRENPDVAAEIE 321


>gi|71089162|gb|AAZ23659.1| RecA [uncultured Burkholderia sp.]
          Length = 288

 Score =  438 bits (1127), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/289 (70%), Positives = 256/289 (88%), Gaps = 1/289 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRLGA-GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA+KLGV+  +LLISQPDTGEQALEI D LVR
Sbjct: 60  LTLQVIAEMQKIGGTAAFIDAEHALDVQYAQKLGVNASDLLISQPDTGEQALEIADALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVK+K++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKSKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           F++  FDI+YGEGIS  GE+IDLGV+A +VDK+GAW+S+ G+R+GQG++
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKLVDKAGAWYSYNGERIGQGKD 288


>gi|262202135|ref|YP_003273343.1| recA protein [Gordonia bronchialis DSM 43247]
 gi|262085482|gb|ACY21450.1| recA protein [Gordonia bronchialis DSM 43247]
          Length = 347

 Score =  438 bits (1127), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 209/329 (63%), Positives = 267/329 (81%), Gaps = 2/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+ AL+QI + +GKG++M+LG +    + IEV+ +GS+ LD+ALGIGG P+GRIV
Sbjct: 7   DREKALDLALAQIDKNFGKGSVMRLGEETR--QPIEVIPTGSIALDVALGIGGLPRGRIV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA +LGVD   LL+SQPDTG
Sbjct: 65  EVYGPESSGKTTVALHAVANAQAQGGIAAFIDAEHALDPDYAARLGVDTDALLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+TS++
Sbjct: 125 EQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTSAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S SK   +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD     GN+T
Sbjct: 185 SNSKTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV    + KSG+WF+++G +LGQG+
Sbjct: 245 RVKVVKNKVAPPFKQAEFDILYGQGISKEGSLIDMGVAEGFIRKSGSWFTYEGDQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           EN++ FL EN ++ + IE  +++  G+ A
Sbjct: 305 ENARKFLLENEDVRDEIEKKIKEKLGIGA 333


>gi|42416885|gb|AAS16324.1| RecA [Mycobacterium chelonae]
          Length = 346

 Score =  438 bits (1127), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/329 (62%), Positives = 269/329 (81%), Gaps = 2/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE AL+QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 6   DREKALELALAQIDKSFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+ ++VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLVRSGAISLLVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD     GN+T
Sbjct: 184 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG+
Sbjct: 244 RVKVVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           EN++ FL EN+++A  IE  +++  G+ A
Sbjct: 304 ENARNFLLENVDVANEIEKKIKEKLGIGA 332


>gi|219871364|ref|YP_002475739.1| recombinase A [Haemophilus parasuis SH0165]
 gi|219691568|gb|ACL32791.1| recombinase A [Haemophilus parasuis SH0165]
          Length = 372

 Score =  438 bits (1127), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/352 (63%), Positives = 281/352 (79%), Gaps = 2/352 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K +ALEAAL+QI++ +GKG+IM+LG    +   IE VS+GSLGLD+ALGIGG P GRIVE
Sbjct: 22  KQQALEAALAQIEKQFGKGSIMKLGQTEQL--DIESVSTGSLGLDLALGIGGLPMGRIVE 79

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL L  IAQ+QK   TCAF+DAEHALD +YAR LGV+  +LLISQPD GE
Sbjct: 80  IYGPESSGKTTLTLSLIAQAQKGNKTCAFIDAEHALDPVYARNLGVNTDDLLISQPDNGE 139

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT++I 
Sbjct: 140 QALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIK 199

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
            + C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G +KD D I G++T+
Sbjct: 200 NTNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRCGVVKDGDEIIGSETK 259

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF++V+FDIMYGEGIS   EL+ L      + KSGAWFS+ G ++GQG+ 
Sbjct: 260 VKVVKNKVAPPFREVQFDIMYGEGISRMNELLILAEANGFIKKSGAWFSYDGTKIGQGKN 319

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           N+  +L+EN EIA+ +E  +R       +SLL+  A ++ D++D ++ +  E
Sbjct: 320 NAVKWLKENPEIADKLEQEIRNTLASNPNSLLKVTASDSIDESDVEEFNEEE 371


>gi|217035313|pdb|2ZR0|A Chain A, Msreca-Q196e Mutant
 gi|217035315|pdb|2ZR9|A Chain A, Msreca Q196e Datp Form Iv
 gi|217035316|pdb|2ZRA|A Chain A, Msreca Q196e Atpgs
 gi|217035317|pdb|2ZRB|A Chain A, Msreca Q196e Form Ii'
          Length = 349

 Score =  438 bits (1127), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/342 (60%), Positives = 273/342 (79%), Gaps = 8/342 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 7   DREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRVI 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FIN++R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+T
Sbjct: 185 NNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG+
Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL------VADSLLQEP 346
           EN++ FL EN ++A  IE  +++  G+       AD +L  P
Sbjct: 305 ENARKFLLENTDVANEIEKKIKEKLGIGAVVTAEADDVLPAP 346


>gi|213619197|ref|ZP_03373023.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
          Length = 322

 Score =  438 bits (1126), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 201/307 (65%), Positives = 260/307 (84%), Gaps = 2/307 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 4   FGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQ 61

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTGEQALEI D L RSGAV
Sbjct: 62  VIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 121

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMK
Sbjct: 122 DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMK 181

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++TRVKVVKNK+A+PFKQ 
Sbjct: 182 IGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSETRVKVVKNKIAAPFKQA 241

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
           EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+ N+  +L+EN   A+ 
Sbjct: 242 EFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATTWLKENPATAKE 301

Query: 327 IESLLRQ 333
           IE  +R+
Sbjct: 302 IEKRVRE 308


>gi|183981991|ref|YP_001850282.1| recombinase A RecA [Mycobacterium marinum M]
 gi|238690925|sp|B2HL06|RECA_MYCMM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|183175317|gb|ACC40427.1| recombinase A RecA [Mycobacterium marinum M]
          Length = 346

 Score =  438 bits (1126), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/340 (60%), Positives = 273/340 (80%), Gaps = 6/340 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI++ YGKG++M+LG +  + + I ++ +GS+ LD+ALGIGG P+GR++
Sbjct: 6   DREKALELAMAQIEKSYGKGSVMRLGDE--VRQPISIIPTGSIALDVALGIGGLPRGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+T
Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK++ PFKQ EFDI+YG GIS  G LID+GV    + KSGAWF+++G++LGQG+
Sbjct: 244 RVKIVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGAWFTYEGEQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA----DSLLQEP 346
           EN++ FL EN E+A  IE  +++  G+ A    D +L  P
Sbjct: 304 ENARNFLLENGEVANEIEKKIKEKLGIGAVVTDDGVLPAP 343


>gi|149688784|gb|ABR27803.1| RecA [Candidatus Pelagibacter ubique HTCC1002]
          Length = 289

 Score =  438 bits (1126), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 203/291 (69%), Positives = 255/291 (87%), Gaps = 2/291 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG + ++   +E +S+GSL LD+ALGIGG PKGR++E+YGPESSGKTTLAL  +
Sbjct: 1   KGSVMKLGQRRAM--DVESISTGSLSLDVALGIGGLPKGRVIEVYGPESSGKTTLALQVL 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAF+DAEHALD IYA+KLGVD + LLISQPDTGEQALEI D LV+SG++ +
Sbjct: 59  AEAQKAGGICAFIDAEHALDPIYAKKLGVDTEELLISQPDTGEQALEIADTLVKSGSISV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAALTPRAEIEG+MG+   G+Q+RLMSQALRKLT SIS +  +++FINQ+RMKIG
Sbjct: 119 IVIDSVAALTPRAEIEGEMGDHHVGLQSRLMSQALRKLTGSISSTNTMMIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFGSPETT+GGNALKFYSSVR+DIRR+G+IK+ D I GN TRVKVVKNK+A PFK VEF
Sbjct: 179 VMFGSPETTSGGNALKFYSSVRMDIRRIGAIKNGDEIIGNSTRVKVVKNKVAPPFKVVEF 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
           D+MYG+GIS  GEL+DLG KA IV+K+GAW+++KG+++GQGREN+KI+L +
Sbjct: 239 DLMYGKGISKVGELVDLGAKADIVEKAGAWYAYKGEKIGQGRENAKIYLEQ 289


>gi|183601363|ref|ZP_02962733.1| recombinase A [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683419|ref|YP_002469802.1| recombinase A [Bifidobacterium animalis subsp. lactis AD011]
 gi|241191138|ref|YP_002968532.1| recombinase A [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196544|ref|YP_002970099.1| recombinase A [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183218969|gb|EDT89610.1| recombinase A [Bifidobacterium animalis subsp. lactis HN019]
 gi|219621069|gb|ACL29226.1| protein RecA [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249530|gb|ACS46470.1| recombinase A [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240251098|gb|ACS48037.1| recombinase A [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|289178883|gb|ADC86129.1| RecA [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295794127|gb|ADG33662.1| recombinase A [Bifidobacterium animalis subsp. lactis V9]
          Length = 382

 Score =  438 bits (1126), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/332 (61%), Positives = 269/332 (81%), Gaps = 4/332 (1%)

Query: 10  VDKSK--ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           VDK +  AL +AL+Q+++ +GKG+ M+LG +    + IEV+ +GSL LD ALGIGG P+G
Sbjct: 20  VDKKREDALNSALAQVEKQFGKGSAMRLGDRPE--QDIEVIPTGSLALDTALGIGGLPRG 77

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTLALH +A +QK GG  AF+DAEHALD +YAR LGVD  +L++SQP
Sbjct: 78  RIVEIYGPESSGKTTLALHVVANAQKNGGVAAFIDAEHALDPVYARHLGVDTDSLIVSQP 137

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRK+T
Sbjct: 138 DNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKMT 197

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            +++++    +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+DIRR+ ++KDKD   G
Sbjct: 198 GALAQANTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRMDIRRIQTLKDKDEPIG 257

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+TRVKVVKNKMA PFK  EFD++YG+GIS  G ++D+ ++  +V KSG+WF++ G++LG
Sbjct: 258 NRTRVKVVKNKMAPPFKTAEFDMLYGQGISQEGSILDMALETDVVRKSGSWFTYNGEQLG 317

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           QGREN + FL +N ++AE I + ++   GL++
Sbjct: 318 QGRENVRKFLIDNPKLAEEISTQVKVKTGLIS 349


>gi|297614553|gb|ADI48584.1| putative RecA recombinase [uncultured bacterium fss6]
          Length = 355

 Score =  438 bits (1126), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/323 (69%), Positives = 272/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+AAL QI+R +GKG+IM+LG   ++   IE VS+GSL LDIALGIGG P GR+V
Sbjct: 4   DKQKALDAALGQIERQFGKGSIMRLGDNQAM--DIESVSTGSLTLDIALGIGGLPFGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD +YA KLGV++  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDAEHALDPVYAEKLGVNVDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGAVD++V+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 122 EQALEICDMLVRSGAVDVVVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  + +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR G++K+ D + GN+T
Sbjct: 182 KKSNSMCIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGAVKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF IMYG GIS  GELIDLGVK  I+DK+GAW+S+KG ++GQG+
Sbjct: 242 RVKVVKNKVAPPFKQAEFQIMYGAGISKEGELIDLGVKQKIIDKAGAWYSYKGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  F+ +N  +A +IE  +R+
Sbjct: 302 ANAMKFMIDNPAVAADIELQIRE 324


>gi|301335042|emb|CBW30484.1| recombinase A [Ochrobactrum sp. 08RB2639]
 gi|301335044|emb|CBW30485.1| recombinase A [Ochrobactrum sp. 08RB2781-1]
          Length = 247

 Score =  438 bits (1126), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/247 (83%), Positives = 232/247 (93%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VS+GSL LDIALG+GG PKGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEH
Sbjct: 1   ETVSTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIEG
Sbjct: 61  ALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +MG+SLPG+QARLMSQALRKLT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKF
Sbjct: 121 EMGDSLPGLQARLMSQALRKLTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKF 180

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           Y+SVRLDIRR+GSIK++D + GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DL
Sbjct: 181 YASVRLDIRRIGSIKERDEVVGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDL 240

Query: 286 GVKASIV 292
           GVKA +V
Sbjct: 241 GVKAGVV 247


>gi|296129392|ref|YP_003636642.1| recA protein [Cellulomonas flavigena DSM 20109]
 gi|296021207|gb|ADG74443.1| recA protein [Cellulomonas flavigena DSM 20109]
          Length = 346

 Score =  438 bits (1126), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/329 (63%), Positives = 267/329 (81%), Gaps = 2/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+SKALEAALSQI R +GKG++M+LG +G     +EV+ +GS+ LD+ALGIGG P+GRI+
Sbjct: 6   DRSKALEAALSQIDRQFGKGSVMRLGDEGR--APVEVIPTGSIALDVALGIGGLPRGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA+KLGVD   LL+SQPD G
Sbjct: 64  EVYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L+RSGA+DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIMDTLIRSGAIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+DIRR+ ++K+     GN+T
Sbjct: 184 NASGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRMDIRRIETLKEGTEPVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFKQ EFDI+YG GIS  G LID+GV+   V KSGAWF+++G +LGQG+
Sbjct: 244 RVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDMGVEHGFVRKSGAWFTYEGDQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           EN++ FLR+N ++A  ++  +++  G+ A
Sbjct: 304 ENARKFLRDNPDLANELDKKIKEKLGIGA 332


>gi|291542171|emb|CBL15281.1| RecA protein [Ruminococcus bromii L2-63]
          Length = 373

 Score =  438 bits (1126), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 209/325 (64%), Positives = 261/325 (80%), Gaps = 2/325 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDK+KALE AL+QI++ +GKGA+M+LG    +   IE +S+GSL LDIALGIGG P+GRI
Sbjct: 3   VDKNKALETALTQIEKQFGKGAVMRLGENKHM--NIEHISTGSLSLDIALGIGGLPRGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTL+LH IA+ QK GG  AF+D EHALD  YA  LGVD+ +LL+SQPDT
Sbjct: 61  VEIYGPESSGKTTLSLHCIAEGQKNGGNVAFIDVEHALDPTYAAALGVDVDSLLVSQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GE ALEI + L+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+ ARLMSQALRKL  +
Sbjct: 121 GEDALEIAEALIRSGAIDVIVIDSVAALVPKAEIEGEMGDSHVGLHARLMSQALRKLAGA 180

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S C+ +FINQ+R K+GV++G+PE TTGG ALKFYSSVR+DIRRV ++K    + G+ 
Sbjct: 181 ISKSNCVAIFINQLREKVGVVYGNPEVTTGGRALKFYSSVRIDIRRVETLKSGGEMVGSH 240

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TR KVVKNK+A PF++ EFDIMYGEGIS  GEL+DL VKA +V K+GAWFS+ G+RLGQG
Sbjct: 241 TRAKVVKNKIAPPFREAEFDIMYGEGISREGELLDLAVKAEVVQKAGAWFSYDGRRLGQG 300

Query: 310 RENSKIFLRENIEIAENIESLLRQN 334
           R+  K  L+ + E+A  IE  L +N
Sbjct: 301 RDKVKELLKTDKELAAEIEKKLWEN 325


>gi|187927571|ref|YP_001898058.1| recombinase A [Ralstonia pickettii 12J]
 gi|241662073|ref|YP_002980433.1| recombinase A [Ralstonia pickettii 12D]
 gi|309779745|ref|ZP_07674502.1| protein RecA [Ralstonia sp. 5_7_47FAA]
 gi|187724461|gb|ACD25626.1| recA protein [Ralstonia pickettii 12J]
 gi|240864100|gb|ACS61761.1| recA protein [Ralstonia pickettii 12D]
 gi|308921484|gb|EFP67124.1| protein RecA [Ralstonia sp. 5_7_47FAA]
          Length = 352

 Score =  437 bits (1125), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 209/315 (66%), Positives = 272/315 (86%), Gaps = 2/315 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G   +  E ++VVS+GSLGLD+ALG+GG P+GR++EIYGPESSGKTT
Sbjct: 25  IEKQFGKGSIMKMGD--AEVEPVQVVSTGSLGLDVALGVGGLPRGRVIEIYGPESSGKTT 82

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +A+ QK GGTCAF+DAEHALD  YA K+GV + +LLISQPDTGEQALEI D LVR
Sbjct: 83  LTLQVVAEMQKLGGTCAFIDAEHALDVTYADKIGVSVPDLLISQPDTGEQALEIADALVR 142

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG+VD+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT +I ++ C+++FINQ
Sbjct: 143 SGSVDLIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTGTIKKTNCMVIFINQ 202

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T+VKVVKNK+A P
Sbjct: 203 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKRGDDVVGNETKVKVVKNKVAPP 262

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YG+G+S  GE+IDLGV+A +V+KSGAW+S+ G+R+GQGR+N + +LREN +
Sbjct: 263 FREAIFDILYGQGVSREGEIIDLGVEAKVVEKSGAWYSYGGERIGQGRDNCREYLRENPD 322

Query: 323 IAENIESLLRQNAGL 337
           +A  IE+ +R+  G+
Sbjct: 323 LAREIENKVREQLGV 337


>gi|294672854|ref|YP_003573470.1| RecA protein [Prevotella ruminicola 23]
 gi|2500093|sp|Q59717|RECA_PRER2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|1420927|gb|AAC44506.1| RecA [Prevotella ruminicola]
 gi|294472544|gb|ADE81933.1| RecA protein [Prevotella ruminicola 23]
          Length = 340

 Score =  437 bits (1125), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/319 (64%), Positives = 263/319 (82%), Gaps = 2/319 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AA+S+I++ YGKG+IM++G +    + +EV+ +GS+GL+ ALG+GG+PKGRI+
Sbjct: 14  EKLKALQAAMSKIEKDYGKGSIMRMGDEQ--IDNVEVIPTGSIGLNAALGVGGYPKGRII 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLA+H IA+ QK GG  AF+DAEHA D  YA  LGVD++NL ISQPD G
Sbjct: 72  EIYGPESSGKTTLAIHAIAECQKNGGIAAFIDAEHAFDRFYAAHLGVDVENLYISQPDNG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L+RS A+DIIVIDSVAALTP+ EIEGDMG+S  G+QARLMSQALRKLTS+I
Sbjct: 132 EQALEIADQLIRSSAIDIIVIDSVAALTPKKEIEGDMGDSAVGLQARLMSQALRKLTSTI 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++    +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR+V +IKD D+I GNQ 
Sbjct: 192 SKTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRKVTAIKDGDNIIGNQV 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV+KNK+A PF++ EF+I +GEGIS  GE++DLGV+  I+ KSG+WFS+   +L QGR
Sbjct: 252 RVKVIKNKVAPPFRKAEFEITFGEGISKIGEIVDLGVEYEIIKKSGSWFSYGDSKLAQGR 311

Query: 311 ENSKIFLRENIEIAENIES 329
           +  K  L++N E+ E +E+
Sbjct: 312 DAVKALLKDNPELCEELEA 330


>gi|225351347|ref|ZP_03742370.1| hypothetical protein BIFPSEUDO_02941 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157691|gb|EEG70974.1| hypothetical protein BIFPSEUDO_02941 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 394

 Score =  437 bits (1125), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 209/360 (58%), Positives = 278/360 (77%), Gaps = 10/360 (2%)

Query: 5   KEMNIVD--KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
           K  N +D  +  AL+ AL+Q+++ +GKG+ M+LG +    + +EV+ +GSL LD+ALGIG
Sbjct: 14  KSANGIDPRRQAALDTALAQVEKSFGKGSAMRLGDRPE--QDVEVIPTGSLALDMALGIG 71

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G PKGRIVEIYGPESSGKTTLALH +A +QK GG  AF+DAEHALD +YARKLGVD  +L
Sbjct: 72  GLPKGRIVEIYGPESSGKTTLALHVVANAQKNGGVAAFIDAEHALDPVYARKLGVDTDSL 131

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           ++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQA
Sbjct: 132 IVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQA 191

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           LRK+T +++++    +FINQ+R KIGV FG+PETTTGG ALKFYSSVR+DIRR+ +IK+ 
Sbjct: 192 LRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYSSVRMDIRRIQTIKNG 251

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           D   GN+T+VKVVKNKMA PFK  EFD++YGEGIS  G ++D+ ++ ++V KSG+WF++ 
Sbjct: 252 DEAVGNRTKVKVVKNKMAPPFKTAEFDVLYGEGISKEGSVLDMALQVNVVKKSGSWFTYG 311

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           G +LGQGREN + FL++N E+ E IE+ ++   GL+      EP     +D ++    N 
Sbjct: 312 GDQLGQGRENVRQFLKDNPELTEEIENKVKAEFGLI------EPTDQFAEDGNEASASNA 365


>gi|291288669|ref|YP_003505485.1| recA protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290885829|gb|ADD69529.1| recA protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 342

 Score =  437 bits (1125), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 213/346 (61%), Positives = 274/346 (79%), Gaps = 8/346 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+AA+ +I++ +GKGA+M+LG +    E + V+ SG L LDIALG+GGFP+GRI+
Sbjct: 4   DKQKALDAAMGKIEKDFGKGAVMRLGDKP--VEKLPVIPSGILSLDIALGVGGFPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYG ESSGKTT+ALH IA++QK GG  AFVDAEHALD IYA+ +GVD  NL++SQPD+G
Sbjct: 62  EIYGAESSGKTTIALHAIAEAQKLGGAAAFVDAEHALDPIYAKAIGVDTDNLIVSQPDSG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEIT+ LVRSGA+DIIV+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRKLTS +
Sbjct: 122 EVALEITETLVRSGAIDIIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKLTSIV 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK  LVFINQ R KIGV++G+PETTTGGNALKFY+S+RL+I++  ++K+K+ + GN  
Sbjct: 182 NKSKTTLVFINQTRSKIGVVYGNPETTTGGNALKFYASMRLEIKKTQALKEKEEVVGNHG 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
             KVVKNK+A PFK  EFDI+YG G+S  G LID+GV A  V+K+GAWFS+   +LGQG+
Sbjct: 242 LAKVVKNKVAPPFKTAEFDILYGVGVSREGLLIDMGVDAGFVNKAGAWFSYNDAKLGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           ENS+ +L+EN EIA+ IE  +R   G++      EP I   +D  K
Sbjct: 302 ENSRTYLKENPEIAQEIEDKIRTKLGMI------EPIILPPEDEKK 341


>gi|329947478|ref|ZP_08294680.1| RecA protein [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328524757|gb|EGF51812.1| RecA protein [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 413

 Score =  437 bits (1125), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 204/318 (64%), Positives = 260/318 (81%), Gaps = 2/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+SKAL  AL+QI + +GKG++M+LG        + V+ +GS+ LD+ALG+GG P+GRI+
Sbjct: 9   DRSKALATALAQIDKSFGKGSVMRLGDD--TRPPVSVIPTGSVALDVALGVGGLPRGRII 66

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD +YA+ LGVD+ NLL+SQPDTG
Sbjct: 67  EVYGPESSGKTTVALHAVASAQRAGGNAAFIDAEHALDPVYAKALGVDIDNLLVSQPDTG 126

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSG +DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 127 EQALEITDMLVRSGGLDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 186

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S +    +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLD+RR+G +KD D   GN+T
Sbjct: 187 SSTGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDVRRIGGLKDGDQPVGNRT 246

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFKQ EFDI+YG+GIS  G L+DLGV   +V KSGAWF++   +LGQG+
Sbjct: 247 RVKVVKNKMAPPFKQAEFDILYGQGISREGSLLDLGVDNGVVRKSGAWFTYGEDQLGQGK 306

Query: 311 ENSKIFLRENIEIAENIE 328
           EN++ FL++N ++A  IE
Sbjct: 307 ENARNFLKDNPQLAAEIE 324


>gi|299136451|ref|ZP_07029634.1| recA protein [Acidobacterium sp. MP5ACTX8]
 gi|298600966|gb|EFI57121.1| recA protein [Acidobacterium sp. MP5ACTX8]
          Length = 357

 Score =  437 bits (1125), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/337 (61%), Positives = 279/337 (82%), Gaps = 1/337 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+SKA+E ALSQ+++ +GKG++M+LG++ +I   I V+S+GS+  D ALG+GG P+GR++
Sbjct: 4   DRSKAIETALSQLEKQFGKGSVMRLGAKEAIGP-ISVISTGSISFDAALGVGGVPRGRVI 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTT+ L  IA++QK GG  AFVDAEHALD  YA+KLGVD  NLL+SQPD G
Sbjct: 63  EIFGPESSGKTTITLQIIAEAQKNGGLAAFVDAEHALDPAYAKKLGVDTDNLLVSQPDYG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+D++V+DSVAAL P+AE++G+MG+S  G+QARLMSQALRKLT ++
Sbjct: 123 EQALEIVEALVRSGAIDVLVVDSVAALVPKAELDGEMGDSHMGLQARLMSQALRKLTGTV 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S+  L+FINQ+R KIGVMFG+PETTTGG ALKFYSSVR+DIRRVG++K+ D + GN+T
Sbjct: 183 SKSRTSLIFINQVREKIGVMFGNPETTTGGRALKFYSSVRIDIRRVGAVKEGDVVVGNRT 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VK+VKNK+A+PF+  EFDI++GEGIS  G+ +DL V  +IVDK+GAW+S++G+R+GQGR
Sbjct: 243 KVKIVKNKVAAPFRDAEFDILFGEGISREGDSLDLAVLHNIVDKAGAWYSYQGERIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           EN + FL+EN E+   I+S LR+  G+     ++ PA
Sbjct: 303 ENVRGFLKENKEVFGRIDSELRKKLGIKPADDVEIPA 339


>gi|297588433|ref|ZP_06947076.1| recombination protein A [Finegoldia magna ATCC 53516]
 gi|297573806|gb|EFH92527.1| recombination protein A [Finegoldia magna ATCC 53516]
          Length = 363

 Score =  437 bits (1125), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 217/362 (59%), Positives = 280/362 (77%), Gaps = 8/362 (2%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD+    N  +K +AL  A + I++ +GKG+IM+LG    + + IE + +G++ LD+ALG
Sbjct: 1   MDF---ANGSEKDQALREAFASIEKQFGKGSIMKLGDH--VQKDIEAIPTGAINLDVALG 55

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG P+GR++EIYGPESSGKTTLALH +A++QK GGT AF+DAEHALD+IYA+ LGVD  
Sbjct: 56  IGGLPRGRVIEIYGPESSGKTTLALHVVAEAQKMGGTAAFIDAEHALDAIYAKNLGVDTD 115

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL+ISQPDTGEQAL I D LVRS AVDII+IDSVAAL PRAEIEG+MG+S  G+QARLMS
Sbjct: 116 NLIISQPDTGEQALGICDSLVRSSAVDIIIIDSVAALVPRAEIEGNMGDSHVGLQARLMS 175

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT  IS+S C ++FINQ+R K+G+MFG+PE TTGG ALKFYSSVR++IRR  +I+
Sbjct: 176 QALRKLTGVISKSNCTVIFINQLREKVGIMFGNPEVTTGGRALKFYSSVRIEIRRGEAIR 235

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             D I GN+T+VK+VKNK+A PFKQVEFDIMYGEGIS  G ++DL     +V K+GAW+S
Sbjct: 236 KGDDIVGNRTKVKIVKNKVAPPFKQVEFDIMYGEGISKIGTILDLATDCKVVKKAGAWYS 295

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK-DDADKDDT 359
           ++ ++LGQGRENSK+FL EN +I E I     +  GL +       AI T+ +D  KD++
Sbjct: 296 YEEEKLGQGRENSKLFLEENPKILEEIIDKTYEFYGLRSKE--DSEAIKTENNDNIKDES 353

Query: 360 DN 361
           +N
Sbjct: 354 NN 355


>gi|259507462|ref|ZP_05750362.1| recombinase A [Corynebacterium efficiens YS-314]
 gi|259164950|gb|EEW49504.1| recombinase A [Corynebacterium efficiens YS-314]
          Length = 401

 Score =  437 bits (1125), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 213/341 (62%), Positives = 270/341 (79%), Gaps = 7/341 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+AAL+ I++ +GKGA+M+LG +      I+V+SSG+  LDIALGIGGFP+GRIV
Sbjct: 30  DRQKALDAALALIEKDFGKGAVMRLGDENR--PPIQVISSGNTALDIALGIGGFPRGRIV 87

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IAQ+QK GG  AF+DAEHALD  YARKLGVD   LL+SQPDTG
Sbjct: 88  EVYGPESSGKTTVALHAIAQAQKAGGIAAFIDAEHALDPDYARKLGVDTDALLVSQPDTG 147

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DI+VIDSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 148 EQALEIADMLVRSGAIDILVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 207

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+T
Sbjct: 208 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRIDVRRIQTLKDGQDAIGNRT 267

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R K+VKNK++ PFK  EFDI+YGEGIS    +IDL V   IV KSG+WF+++G +LGQG+
Sbjct: 268 RAKIVKNKVSPPFKIAEFDIIYGEGISRESSIIDLAVDNGIVKKSGSWFTYEGDQLGQGK 327

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL-----VADSLLQEP 346
           E +++FL+E  E+A+ IE  + +  G+      AD L  +P
Sbjct: 328 EKARLFLKETPELADEIEEKIFRKLGVGKFAQTADELTDDP 368


>gi|108804260|ref|YP_644197.1| recA protein [Rubrobacter xylanophilus DSM 9941]
 gi|123177369|sp|Q1AW43|RECA_RUBXD RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|108765503|gb|ABG04385.1| RecA protein [Rubrobacter xylanophilus DSM 9941]
          Length = 344

 Score =  437 bits (1125), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/318 (65%), Positives = 264/318 (83%), Gaps = 2/318 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL+ A+SQI+R +GKG+IM++G + S  + +  +S+GSL LD+ALG+GG P+GRI
Sbjct: 3   LDKSKALDTAVSQIERQFGKGSIMRMGDRAS--QKVASISTGSLALDLALGVGGVPRGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEI+GPESSGKTTLALH IA++Q+ GG  AF+DAEHALD  YA  +GVDL+NL  SQPD+
Sbjct: 61  VEIFGPESSGKTTLALHIIAEAQRAGGLAAFIDAEHALDPTYAEAIGVDLENLYFSQPDS 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D +VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL+ S
Sbjct: 121 GEQALEIADTLVRSGALDAVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGS 180

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +SRS    +FINQ+R KIGVMFGSPETT GG ALKFY+SVR+DIRR+G++K  +   GNQ
Sbjct: 181 LSRSGTTAIFINQLREKIGVMFGSPETTPGGRALKFYASVRMDIRRIGALKAGNETVGNQ 240

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVK+VKNK+A PFK+V FDIMYGEGIS  G L+D+G++  ++ KSGAWF++  +R+GQG
Sbjct: 241 TRVKIVKNKVAPPFKEVTFDIMYGEGISREGSLLDVGIEQGVIQKSGAWFAYGEERIGQG 300

Query: 310 RENSKIFLRENIEIAENI 327
           REN++ FL+E+ EI + I
Sbjct: 301 RENARKFLKEHPEIRDRI 318


>gi|225010383|ref|ZP_03700855.1| recA protein [Flavobacteria bacterium MS024-3C]
 gi|225005862|gb|EEG43812.1| recA protein [Flavobacteria bacterium MS024-3C]
          Length = 335

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/323 (63%), Positives = 264/323 (81%), Gaps = 3/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+  L ++ + YGKGA+M++G   S+ + +EV+SSGSLGLD+ALG+GG+P+GR++E
Sbjct: 8   KLKALQLTLDKLDKTYGKGAVMKMGD--SVAQDVEVISSGSLGLDLALGVGGYPRGRVIE 65

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH +A++QK GG  AF+DAEHA D  YA+KLGVD+ NL+ISQPD GE
Sbjct: 66  IYGPESSGKTTLTLHAMAEAQKAGGIAAFIDAEHAFDRFYAQKLGVDIDNLIISQPDNGE 125

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RSGA+DI+VIDSVAALTP++EIEG+MG+S  G+ ARLMSQALRKLT SIS
Sbjct: 126 QALEIADNLIRSGAIDIVVIDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTGSIS 185

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQT 250
           ++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IKD D  + GN+T
Sbjct: 186 KTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKDTDGDVQGNKT 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK  EFDIMYG+G+S  GE+IDLGV   I+ KSG+WFS+   +LGQGR
Sbjct: 246 RVKVVKNKVAPPFKTAEFDIMYGQGVSKVGEVIDLGVDFEIIKKSGSWFSYGETKLGQGR 305

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           +  K  L +N ++ + +E  +++
Sbjct: 306 DAVKTLLLDNPDLMDELEGKIKE 328


>gi|311068216|ref|YP_003973139.1| recombinase A [Bacillus atrophaeus 1942]
 gi|310868733|gb|ADP32208.1| recombinase A [Bacillus atrophaeus 1942]
          Length = 347

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/336 (62%), Positives = 271/336 (80%), Gaps = 2/336 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG +      I  V SGSL LD ALGIGG+P+GRI+
Sbjct: 3   DRQAALDMALKQIEKQFGKGSIMKLGEKTDTR--ISTVPSGSLALDTALGIGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ Q+ GG  AF+DAEHALD +YA+KLGV+++ LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDI+VIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K  + + GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PF+  E DIMYGEGIS  GE+IDLG +  IV KSG+W+S++ +RLGQGR
Sbjct: 241 RIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           EN+K FL+EN +I   I+  +R++ GL  + + Q+P
Sbjct: 301 ENAKQFLKENKDIMLMIQEQIREHYGLDNNGVAQKP 336


>gi|218290126|ref|ZP_03494288.1| recA protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218239835|gb|EED07024.1| recA protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 352

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/323 (64%), Positives = 265/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK  ALE AL  I++ +GKG+IM+LG   ++   +E V +GS+ LDIALG+GG P+GRIV
Sbjct: 3   DKKAALEQALKHIEKQFGKGSIMRLGEAAAMT--VETVPTGSIALDIALGVGGLPRGRIV 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GG  AF+DAEHALD +YA+KLGV++  LLISQPDTG
Sbjct: 61  EIYGPESSGKTTVALHVVAEVQKLGGQAAFIDAEHALDPVYAQKLGVNIDELLISQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVD+IV+DSVAAL P+ E+EGDMG+S  G+QARLMSQALRKL  +I
Sbjct: 121 EQALEIAEALVRSGAVDVIVVDSVAALVPKNELEGDMGDSHVGLQARLMSQALRKLAGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+SK I +FINQ+R K+GVMFG+PETTTGG ALKFY+SVRL++RRV +IK  + + G++T
Sbjct: 181 SKSKTIAIFINQIREKVGVMFGNPETTTGGRALKFYASVRLEVRRVEAIKQGNDVVGSRT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PF+Q + DIM+GEGIS  G LID+  +  +V KSGAW+S+  +RLGQGR
Sbjct: 241 RIKVVKNKVAPPFRQCDVDIMFGEGISREGSLIDIATEIDVVQKSGAWYSYGEERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           EN+K FL+E+ EIAE IE+ +R+
Sbjct: 301 ENAKQFLKEHPEIAEQIEAAVRE 323


>gi|217035318|pdb|2ZRC|A Chain A, Msreca Q196n Form Iv
 gi|217035319|pdb|2ZRD|A Chain A, Msreca Q196n Adp Form Iv
 gi|217035320|pdb|2ZRE|A Chain A, Msreca Q196n Atpgs Form Iv
 gi|217035321|pdb|2ZRF|A Chain A, Msreca Q196n Datp Form Iv
 gi|217035322|pdb|2ZRG|A Chain A, Msreca Q196n Datp Form Ii'
          Length = 349

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/342 (60%), Positives = 272/342 (79%), Gaps = 8/342 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 7   DREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRVI 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FIN +R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+T
Sbjct: 185 NNSGTTAIFINNLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG+
Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL------VADSLLQEP 346
           EN++ FL EN ++A  IE  +++  G+       AD +L  P
Sbjct: 305 ENARKFLLENTDVANEIEKKIKEKLGIGAVVTAEADDVLPAP 346


>gi|229820934|ref|YP_002882460.1| recA protein [Beutenbergia cavernae DSM 12333]
 gi|229566847|gb|ACQ80698.1| recA protein [Beutenbergia cavernae DSM 12333]
          Length = 350

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/327 (63%), Positives = 265/327 (81%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKSKALEAAL QI R +GKG++M+LG        +EV+ + S+ LD+ALGIGG P+GR+V
Sbjct: 7   DKSKALEAALGQIDRQFGKGSVMRLGD--DTRPPVEVIPTSSIALDVALGIGGLPRGRVV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q+ GG   F+DAEHALD  YA++LGVD   LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQRLGGIAGFIDAEHALDPEYAKRLGVDTDALLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLIRSGALDIVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S S    +FINQ+R KIGV FGSPETT+GG ALKFY+SVRLD+RR+ ++K+     GN+T
Sbjct: 185 SASGTTAIFINQLREKIGVFFGSPETTSGGKALKFYASVRLDVRRIETLKEGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFKQ EFDI+YG GIS  G LIDLGV   IV KSGAW++++G +LGQG+
Sbjct: 245 RVKVVKNKMAPPFKQAEFDILYGHGISREGGLIDLGVDQGIVRKSGAWYTYEGDQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN++ FL++N E+A+ IE+ +++  G+
Sbjct: 305 ENARKFLKDNPELADEIETRIKEKLGI 331


>gi|171742631|ref|ZP_02918438.1| hypothetical protein BIFDEN_01744 [Bifidobacterium dentium ATCC
           27678]
 gi|171278245|gb|EDT45906.1| hypothetical protein BIFDEN_01744 [Bifidobacterium dentium ATCC
           27678]
          Length = 451

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/348 (59%), Positives = 274/348 (78%), Gaps = 8/348 (2%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  ALE AL+Q+++ +GKG+ M+LG +    + +EV+ +GSL LD+ALGIGG PKGRIVE
Sbjct: 89  RQAALETALAQVEKNFGKGSAMRLGDRPE--QDVEVIPTGSLALDMALGIGGLPKGRIVE 146

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH +A +QK GG  AF+DAEHALD +YARKLGVD  +L++SQPD GE
Sbjct: 147 IYGPESSGKTTLALHVVANAQKKGGVAAFIDAEHALDPVYARKLGVDTDSLIVSQPDNGE 206

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T +++
Sbjct: 207 QALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALA 266

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGV FG+PETTTGG ALKFY+SVR+DIRR+ +IK+ D   GN+TR
Sbjct: 267 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRMDIRRIQTIKNGDEAVGNRTR 326

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNKMA PFK  EFD++YGEGIS  G ++D+ ++ ++V KSG+WF++ G +LGQGRE
Sbjct: 327 VKVVKNKMAPPFKSAEFDVLYGEGISKEGSVLDMALQVNVVKKSGSWFTYDGDQLGQGRE 386

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           N + FL++N  + E IE+ ++   GL+      EP     +D D ++T
Sbjct: 387 NVRQFLKDNPGVTEEIENRVKAAFGLI------EPTDQFAEDGDGNET 428


>gi|240950340|ref|ZP_04754610.1| recombinase A [Actinobacillus minor NM305]
 gi|240295151|gb|EER45970.1| recombinase A [Actinobacillus minor NM305]
          Length = 375

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/354 (63%), Positives = 283/354 (79%), Gaps = 11/354 (3%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + KAL+AAL+QI++ +GKG+IM+LG   ++   IE VS+GSLGLD+ALGIGG P GRIVE
Sbjct: 24  RKKALDAALAQIEKQFGKGSIMKLGQTQNL--DIEAVSTGSLGLDMALGIGGLPMGRIVE 81

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPESSGKTTL L TIAQ+QK G TCAF+DAEHALD +YARKLGV+  +LLISQPD GE
Sbjct: 82  IFGPESSGKTTLTLSTIAQAQKAGKTCAFIDAEHALDPVYARKLGVNTDDLLISQPDNGE 141

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT +I 
Sbjct: 142 QALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTGNIK 201

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
            + C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G +KD D+I G++T+
Sbjct: 202 NTNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGVVKDGDNIIGSETK 261

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF++V+FDIMYGEGI+   EL+ L  K   + K+GAWFS++G ++GQG+ 
Sbjct: 262 VKVVKNKVAPPFREVQFDIMYGEGIARTNELLILAEKQGFIKKAGAWFSYEGDKIGQGKN 321

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP--AINTKDDADKDDTDNVE 363
           N+  +L E+ E+A  IE+ LR+         ++ P  A+   D+ D D  D VE
Sbjct: 322 NAIKWLNEHPEVASKIEADLRE-------LFMKNPNTALALDDEKDSDAEDVVE 368


>gi|254518999|ref|ZP_05131055.1| recombinase A [Clostridium sp. 7_2_43FAA]
 gi|226912748|gb|EEH97949.1| recombinase A [Clostridium sp. 7_2_43FAA]
          Length = 373

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 204/339 (60%), Positives = 275/339 (81%), Gaps = 4/339 (1%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           + QI++ +GKG++++LGS   +   IE +S+G L LDIALG+GG P+GRI+E+YGPESSG
Sbjct: 1   MKQIEKQFGKGSVIKLGSNPIM--DIETISTGCLALDIALGVGGVPRGRIIEVYGPESSG 58

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTT+ALH IA++QK GG  AF+DAEHALD  YA+ LGV  ++L++SQPDTGEQALEIT+ 
Sbjct: 59  KTTIALHIIAEAQKLGGAAAFIDAEHALDPAYAKNLGVSTEDLIVSQPDTGEQALEITEA 118

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           LVRS AVD++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT++I++S+C+++F
Sbjct: 119 LVRSNAVDVLVVDSVAALVPRAEIEGEMGDSHIGLQARLMSQALRKLTAAINKSQCVVIF 178

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           INQ+R KIG+MFG+PETTTGG ALKFY+SVRLDIR++ +IK  ++I G++ R+KV+KNK+
Sbjct: 179 INQLREKIGIMFGNPETTTGGRALKFYASVRLDIRKIDTIKVGENILGSRARIKVIKNKV 238

Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
           A PFKQ EFDIMY EGIS  G L+D+ V   I++KSG WFS+   RLGQGRENSK +L+E
Sbjct: 239 APPFKQAEFDIMYNEGISKEGNLLDIAVNEDIINKSGTWFSYNDIRLGQGRENSKAYLKE 298

Query: 320 NIEIAENIESLLRQ--NAGLVADSLLQEPAINTKDDADK 356
           N ++A  +E+ +R+  N  LV D+ +QE  +  +D  +K
Sbjct: 299 NKDLALEVENAIREKHNLPLVKDTKVQEGEVKKEDKTNK 337


>gi|108799114|ref|YP_639311.1| recombinase A [Mycobacterium sp. MCS]
 gi|119868229|ref|YP_938181.1| recombinase A [Mycobacterium sp. KMS]
 gi|126434720|ref|YP_001070411.1| recombinase A [Mycobacterium sp. JLS]
 gi|122977082|sp|Q1BA29|RECA_MYCSS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|189039599|sp|A3PYE3|RECA_MYCSJ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|189039600|sp|A1UEY3|RECA_MYCSK RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|108769533|gb|ABG08255.1| recA protein [Mycobacterium sp. MCS]
 gi|119694318|gb|ABL91391.1| recA protein [Mycobacterium sp. KMS]
 gi|126234520|gb|ABN97920.1| recA protein [Mycobacterium sp. JLS]
          Length = 347

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 209/340 (61%), Positives = 274/340 (80%), Gaps = 6/340 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE AL+QI++ +GKG++M+LG +  +   I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 7   DREKALELALAQIEKSHGKGSVMRLGDE--VRAPISVIPTGSIALDVALGIGGLPRGRVI 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+T
Sbjct: 185 SNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG+
Sbjct: 245 RVKIVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQ--NAGLV--ADSLLQEP 346
           EN++ FL EN ++A  IE  +++  N G V  AD +L  P
Sbjct: 305 ENARKFLLENGDVANEIEKKIKEKLNIGAVVTADDVLPAP 344


>gi|11387036|sp|Q9R9U2|RECA_PSEOL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|5824159|emb|CAB54066.1| RecA gene protein [Pseudomonas putida]
          Length = 348

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/322 (63%), Positives = 270/322 (83%), Gaps = 2/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI++ +GKG+IM+LGS  ++   I+V+S+GSLGLDIALG+GG P+GRIVE
Sbjct: 5   KSKALEAALSQIEKQFGKGSIMRLGSDRTM--DIDVISTGSLGLDIALGVGGLPRGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL L  IA++Q+ G TCAFVDAEHALD IYA KLGV++  LL SQPDTGE
Sbjct: 63  IYGPESSGKTTLTLSVIAEAQRQGLTCAFVDAEHALDPIYAAKLGVNIDELLCSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D+L RSGAV++IV+DSVAAL P+AEIEG++G+S  G+ AR+MSQA+RK+T ++ 
Sbjct: 123 QALEIVDILTRSGAVNLIVVDSVAALVPKAEIEGEIGDSHVGLAARMMSQAMRKITGNLK 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
            S  + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++K+ + + G++TR
Sbjct: 183 NSNTMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGEEVVGSETR 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A+PF+Q EF I+YG+GIS  GE++DL V  + V+KSGAW+SF+G ++GQG+ 
Sbjct: 243 VKVVKNKVAAPFRQAEFQIVYGQGISKAGEIVDLAVANNFVEKSGAWYSFEGNKIGQGKA 302

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
           N+  +L EN    + +E ++R+
Sbjct: 303 NTMKWLLENKPTMDKLEGMIRE 324


>gi|126652531|ref|ZP_01724696.1| RecA [Bacillus sp. B14905]
 gi|126590659|gb|EAZ84775.1| RecA [Bacillus sp. B14905]
          Length = 353

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/331 (63%), Positives = 267/331 (80%), Gaps = 2/331 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  ALE AL QI++ +GKG+IM+LG +  +   I   SSGSL LD ALG+GG+P+GRI+
Sbjct: 3   DRKAALEQALKQIEKNFGKGSIMKLGEKTDLE--IATSSSGSLALDAALGVGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ Q  GG  AF+DAEHALD IYA+KLGV++  LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVALHAIAEVQARGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+DIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ SI
Sbjct: 121 EQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGSI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R KIGVMFG+PETT GG ALKFYSSVRL++RR  +IK  + I GN+T
Sbjct: 181 NKSKTIAIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEAIKQGNDIVGNRT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++K+VKNK+A PF+  E DIMYGEGIS  GE +DLGV+  IV KSG+W+++  +RLGQGR
Sbjct: 241 KIKIVKNKVAPPFRTAEVDIMYGEGISKEGETVDLGVELDIVQKSGSWYAYGDERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           EN+K +L+EN  + E I + +R + G+ A+S
Sbjct: 301 ENAKQYLKENTAVLEEISNKIRSSYGIAANS 331


>gi|217035323|pdb|2ZRH|A Chain A, Msreca Q196a Form Iv
 gi|217035324|pdb|2ZRI|A Chain A, Msreca Q196a Adp Form Iv
 gi|217035325|pdb|2ZRJ|A Chain A, Msreca Q196a Atpgs Form Iv
 gi|217035326|pdb|2ZRK|A Chain A, Msreca Q196a Datp Form Iv
 gi|217035327|pdb|2ZRL|A Chain A, Msreca Q196a Datp Form Ii'
          Length = 349

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/342 (60%), Positives = 272/342 (79%), Gaps = 8/342 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 7   DREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRVI 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FIN +R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+T
Sbjct: 185 NNSGTTAIFINALREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG+
Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL------VADSLLQEP 346
           EN++ FL EN ++A  IE  +++  G+       AD +L  P
Sbjct: 305 ENARKFLLENTDVANEIEKKIKEKLGIGAVVTAEADDVLPAP 346


>gi|269956042|ref|YP_003325831.1| recA protein [Xylanimonas cellulosilytica DSM 15894]
 gi|269304723|gb|ACZ30273.1| recA protein [Xylanimonas cellulosilytica DSM 15894]
          Length = 376

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/327 (63%), Positives = 267/327 (81%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALEAAL+QI R +GKG++M+LG +      +EV+ +GS+ LD+ALGIGG P+GR++
Sbjct: 6   DREKALEAALAQIDRSFGKGSVMRLGEE--TRAPVEVIPTGSIALDVALGIGGLPRGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA+KLGVD   LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVASAQRAGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGV FGSPETTTGG ALKFY+SVRLDIRR+ ++K+     GN+T
Sbjct: 184 NSSGTSAIFINQLREKIGVFFGSPETTTGGKALKFYASVRLDIRRIETLKEGTEPVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFKQ EFDI+YG GIS  G LID+GV+  +V KSG+WF+++G +LGQG+
Sbjct: 244 RVKVVKNKMAPPFKQAEFDILYGVGISREGGLIDMGVEHGLVRKSGSWFTYEGDQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN++ FLR+N ++A  IE  +++  G+
Sbjct: 304 ENARGFLRDNPDLANEIEKRIKEKLGV 330


>gi|294787000|ref|ZP_06752254.1| protein RecA [Parascardovia denticolens F0305]
 gi|315226642|ref|ZP_07868430.1| recombination protein A [Parascardovia denticolens DSM 10105]
 gi|294485833|gb|EFG33467.1| protein RecA [Parascardovia denticolens F0305]
 gi|315120774|gb|EFT83906.1| recombination protein A [Parascardovia denticolens DSM 10105]
          Length = 373

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 203/329 (61%), Positives = 268/329 (81%), Gaps = 2/329 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL+Q+++ +GKG+ M+LG +    + +EV+ +GSL LD+ALGIGG P+GRIVE
Sbjct: 15  RQAALDTALAQVEKTFGKGSAMRLGDK--PVQHVEVIPTGSLALDLALGIGGLPRGRIVE 72

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH +A +QK GG  AF+DAEHALD  YARKLGVD  +L+ISQPD GE
Sbjct: 73  IYGPESSGKTTIALHAVANAQKAGGVAAFIDAEHALDPEYARKLGVDTDSLIISQPDNGE 132

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DML+RSGA+DIIVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRK+T ++S
Sbjct: 133 QALEIADMLIRSGALDIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKMTGALS 192

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S    +FINQ+R KIGVMFG+PETTTGG ALKFY+SVRLDIRR+ ++K+ D   GN+TR
Sbjct: 193 QSNTTAIFINQLREKIGVMFGNPETTTGGKALKFYASVRLDIRRIQTLKNGDEAVGNRTR 252

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNKMA PFK  EFDI+YGEG+S  G ++D+G+   +V KSG+WF++ G +LGQGRE
Sbjct: 253 VKVVKNKMAPPFKSAEFDILYGEGVSREGSILDMGLALGLVKKSGSWFTYDGDQLGQGRE 312

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVAD 340
            ++ FL++N ++A+ IE+ ++   G++ D
Sbjct: 313 KARQFLKDNPQLADEIETKVKVAYGVIPD 341


>gi|126698927|ref|YP_001087824.1| recombinase A [Clostridium difficile 630]
 gi|254974873|ref|ZP_05271345.1| RecA protein (recombinase A) [Clostridium difficile QCD-66c26]
 gi|255092260|ref|ZP_05321738.1| RecA protein (recombinase A) [Clostridium difficile CIP 107932]
 gi|255100349|ref|ZP_05329326.1| RecA protein (recombinase A) [Clostridium difficile QCD-63q42]
 gi|255306286|ref|ZP_05350457.1| RecA protein (recombinase A) [Clostridium difficile ATCC 43255]
 gi|255314000|ref|ZP_05355583.1| RecA protein (recombinase A) [Clostridium difficile QCD-76w55]
 gi|255516680|ref|ZP_05384356.1| RecA protein (recombinase A) [Clostridium difficile QCD-97b34]
 gi|255649779|ref|ZP_05396681.1| RecA protein (recombinase A) [Clostridium difficile QCD-37x79]
 gi|260682936|ref|YP_003214221.1| recombinase A [Clostridium difficile CD196]
 gi|260686534|ref|YP_003217667.1| RecA protein (recombinase A) [Clostridium difficile R20291]
 gi|306519883|ref|ZP_07406230.1| RecA protein (recombinase A) [Clostridium difficile QCD-32g58]
 gi|122974146|sp|Q18BJ4|RECA_CLOD6 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|115250364|emb|CAJ68186.1| Protein RecA (Recombinase A) [Clostridium difficile]
 gi|260209099|emb|CBA62262.1| RecA protein (recombinase A) [Clostridium difficile CD196]
 gi|260212550|emb|CBE03518.1| RecA protein (recombinase A) [Clostridium difficile R20291]
          Length = 348

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 204/322 (63%), Positives = 264/322 (81%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL  AL +I++ +GKG++M+LG   S+   I+V+S+G++GLDIA+GIGG P+GRIV
Sbjct: 6   EKLKALNEALGKIEKDFGKGSVMKLGEATSM--SIDVISTGAIGLDIAIGIGGLPRGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+AL  +A +QK GG  AF+DAEHALD +YA+ LGVD+ NL+ISQPDTG
Sbjct: 64  EVYGPESSGKTTVALSCVASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L+RSGA+DIIVIDSVAAL P+AEI+GDMG+S  G+QARLMSQALRKLT SI
Sbjct: 124 EQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKLTGSI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+R K+G+MFG+PETTTGG ALKFYSSVRLD+R++ +IK  D + G++T
Sbjct: 184 KKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIGSRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDIMYGEGIS  G+L+D+     IV KSG+W+S+   +LGQGR
Sbjct: 244 RVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           EN K FL +N+++   I+  +R
Sbjct: 304 ENVKKFLEDNLDLTTEIDEKVR 325


>gi|294500865|ref|YP_003564565.1| RecA2 protein [Bacillus megaterium QM B1551]
 gi|295706211|ref|YP_003599286.1| RecA2 protein [Bacillus megaterium DSM 319]
 gi|25004877|emb|CAD56684.1| RecA2 protein [Bacillus megaterium]
 gi|294350802|gb|ADE71131.1| RecA2 protein [Bacillus megaterium QM B1551]
 gi|294803870|gb|ADF40936.1| RecA2 protein [Bacillus megaterium DSM 319]
          Length = 345

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 211/345 (61%), Positives = 271/345 (78%), Gaps = 5/345 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG Q    + I  + SGSL LDIALG+GG+P+GR+V
Sbjct: 3   DRQAALDMALKQIEKQFGKGSIMKLGEQTE--KRISTIPSGSLALDIALGVGGYPRGRVV 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ Q+ GG  AF+DAEHALD +YA+KLGV++  LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDIIV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K  + I GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIVGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PF+  E DIMYGEGIS  GE++D+  +  IV KSG+W+S+  +RLGQGR
Sbjct: 241 RIKVVKNKVAPPFRAAEVDIMYGEGISKEGEILDIASELDIVQKSGSWYSYNDERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           EN+K FL+EN +I + I   +R++ GL  D    EPA    D  D
Sbjct: 301 ENAKQFLKENTDIRQEIAGQVREHHGLDQDG---EPAPEDDDQGD 342


>gi|255655339|ref|ZP_05400748.1| RecA protein (recombinase A) [Clostridium difficile QCD-23m63]
 gi|296451325|ref|ZP_06893065.1| recombination protein A [Clostridium difficile NAP08]
 gi|296880323|ref|ZP_06904286.1| recombination protein A [Clostridium difficile NAP07]
 gi|296259931|gb|EFH06786.1| recombination protein A [Clostridium difficile NAP08]
 gi|296428564|gb|EFH14448.1| recombination protein A [Clostridium difficile NAP07]
          Length = 348

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 204/322 (63%), Positives = 264/322 (81%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL  AL +I++ +GKG++M+LG   S+   I+V+S+G++GLDIA+GIGG P+GRIV
Sbjct: 6   EKLKALNEALGKIEKDFGKGSVMKLGEATSM--SIDVISTGAIGLDIAIGIGGLPRGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+AL  +A +QK GG  AF+DAEHALD +YA+ LGVD+ NL+ISQPDTG
Sbjct: 64  EVYGPESSGKTTVALSCVASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L+RSGA+DIIVIDSVAAL P+AEI+GDMG+S  G+QARLMSQALRKLT SI
Sbjct: 124 EQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKLTGSI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+R K+G+MFG+PETTTGG ALKFYSSVRLD+R++ +IK  D + G++T
Sbjct: 184 KKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIGSRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDIMYGEGIS  G+L+D+     IV KSG+W+S+   +LGQGR
Sbjct: 244 RVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           EN K FL +N+++   I+  +R
Sbjct: 304 ENVKKFLEDNLDLTNEIDEKVR 325


>gi|169824454|ref|YP_001692065.1| recombinase A [Finegoldia magna ATCC 29328]
 gi|167831259|dbj|BAG08175.1| recombinase A [Finegoldia magna ATCC 29328]
          Length = 361

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/327 (63%), Positives = 264/327 (80%), Gaps = 5/327 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD+    N  +K +AL  A + I++ +GKG+IM+LG    + + IE + +G++ LD+ALG
Sbjct: 1   MDFS---NGTEKDQALREAFASIEKQFGKGSIMKLGDH--VQKDIEAIPTGAINLDVALG 55

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG P+GR++EIYGPESSGKTTLALH +A++QK GGT AF+DAEHALD+IYA+ LGVD  
Sbjct: 56  IGGLPRGRVIEIYGPESSGKTTLALHVVAEAQKMGGTAAFIDAEHALDAIYAKNLGVDTD 115

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL+ISQPDTGEQAL I D LVRS AVDII+IDSVAAL PRAEIEG+MG+S  G+QARLMS
Sbjct: 116 NLIISQPDTGEQALGICDSLVRSSAVDIIIIDSVAALVPRAEIEGNMGDSHVGLQARLMS 175

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT  IS+S C ++FINQ+R K+G+MFG+PE TTGG ALKFYSSVR++IRR  +I+
Sbjct: 176 QALRKLTGVISKSNCTVIFINQLREKVGIMFGNPEVTTGGRALKFYSSVRIEIRRGEAIR 235

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             D I GN+T+VK+VKNK+A PFKQVEFDIMYGEGIS  G ++DL     ++ K+GAW+S
Sbjct: 236 KGDDIVGNRTKVKIVKNKVAPPFKQVEFDIMYGEGISKIGTILDLATDCKVIKKAGAWYS 295

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENI 327
           ++ ++LGQGRENSK+FL EN +I E I
Sbjct: 296 YEEEKLGQGRENSKVFLEENPKILEEI 322


>gi|325286323|ref|YP_004262113.1| Protein recA [Cellulophaga lytica DSM 7489]
 gi|324321777|gb|ADY29242.1| Protein recA [Cellulophaga lytica DSM 7489]
          Length = 354

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 205/318 (64%), Positives = 261/318 (82%), Gaps = 3/318 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+  L ++ + YGKG++M++G +  + E + V+SSGSLGLDIALG+GG+P+GR+VE
Sbjct: 27  KLKALKLTLDKLDKTYGKGSVMKMGDK--VVEDVAVISSGSLGLDIALGVGGYPRGRVVE 84

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA++QK GG  AF+DAEHA D  YA KLGVD+ NL+ISQPD GE
Sbjct: 85  IYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAEHAFDRFYAEKLGVDIDNLIISQPDHGE 144

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RSGA+DI+++DSVAALTP++EIEG+MG+S  G+ ARLMSQALRKLTSSIS
Sbjct: 145 QALEIADNLIRSGAIDIVIVDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTSSIS 204

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQT 250
           ++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IK+ D  + GN+T
Sbjct: 205 KTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKNTDGDVQGNKT 264

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+  EFDIMYG+G+S  GE++DLGV+  I+ KSG+WFS+   +LGQGR
Sbjct: 265 RVKVVKNKVAPPFRTTEFDIMYGQGVSKVGEILDLGVQYEIIKKSGSWFSYGDTKLGQGR 324

Query: 311 ENSKIFLRENIEIAENIE 328
           +  K  L +N E+ E +E
Sbjct: 325 DAVKSILADNPELLEELE 342


>gi|226306240|ref|YP_002766200.1| RecA protein [Rhodococcus erythropolis PR4]
 gi|259563342|sp|C0ZYM6|RECA_RHOE4 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226185357|dbj|BAH33461.1| RecA protein [Rhodococcus erythropolis PR4]
          Length = 345

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/330 (62%), Positives = 268/330 (81%), Gaps = 2/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+ AL+QI + +GKG++M+LG    + + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 7   DRDKALDLALAQIDKNFGKGSVMRLGE--GVRQPIAVIPTGSIALDVALGIGGLPRGRVI 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA KLGVD   LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQANGGIAAFIDAEHALDPDYAAKLGVDTDALLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEITDMLIRSGALDIVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGAM 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S   ++FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     GN+T
Sbjct: 185 NNSGTTVIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDIRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+W++++G +LGQG+
Sbjct: 245 RVKVVKNKVAPPFKQAEFDILYGQGISKEGSLIDMGVEHGFIRKSGSWYTYEGDQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           EN++ FL EN +I + IE  +++  G+ AD
Sbjct: 305 ENARKFLLENTDIRDEIEKKIKEKLGIGAD 334


>gi|258511453|ref|YP_003184887.1| recA protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478179|gb|ACV58498.1| recA protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 355

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/323 (64%), Positives = 266/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK  ALE AL +I++ +GKG+IM+LG   ++   +E V +GS+ LDIALG+GG P+GRIV
Sbjct: 3   DKKAALEQALRKIEKEFGKGSIMRLGEAAAMT--VETVPTGSIALDIALGVGGLPRGRIV 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GG  AF+DAEHALD +YA+KLGV++  LLISQPDTG
Sbjct: 61  EIYGPESSGKTTVALHVVAEVQKLGGQAAFIDAEHALDPVYAQKLGVNIDELLISQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVD+IV+DSVAAL P+ E+EGDMG+S  G+QARLMSQALRKL  +I
Sbjct: 121 EQALEIAEALVRSGAVDVIVVDSVAALVPKNELEGDMGDSHVGLQARLMSQALRKLAGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+SK I +FINQ+R K+GVMFG+PETTTGG ALKFY+SVRL++RRV +IK  + + G++T
Sbjct: 181 SKSKTIAIFINQIREKVGVMFGNPETTTGGRALKFYASVRLEVRRVEAIKQGNDVVGSRT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PF+Q + DIM+GEGIS  G LID+  +  +V KSGAW+SF  +RLGQGR
Sbjct: 241 RIKVVKNKVAPPFRQCDVDIMFGEGISREGSLIDIATEIDVVQKSGAWYSFGEERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           EN+K +L+E+ EIAE IE+ +R+
Sbjct: 301 ENAKQYLKEHPEIAEQIEAAVRE 323


>gi|317129135|ref|YP_004095417.1| recA protein [Bacillus cellulosilyticus DSM 2522]
 gi|315474083|gb|ADU30686.1| recA protein [Bacillus cellulosilyticus DSM 2522]
          Length = 349

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 212/343 (61%), Positives = 270/343 (78%), Gaps = 8/343 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ +AL+ AL QI++ +GKG+IM+LG Q    + +  VSSG+L LDIALG+GG+PKGRI+
Sbjct: 3   DRKQALDMALRQIEKQFGKGSIMKLGEQAE--QRVSTVSSGALALDIALGVGGYPKGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA++Q+ GG  AF+DAEHALD IYA+KLGV++  LL+SQPDTG
Sbjct: 61  EIYGPESSGKTTVALHAIAETQRNGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDI+VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR  ++K  + + GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMVGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYGEGIS  G L+D+     IV KSGAW+S+  +RLGQGR
Sbjct: 241 KIKVVKNKVAPPFRTAEVDIMYGEGISREGSLLDIASDLDIVQKSGAWYSYNEERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           ENSK FL+EN EI   IE  +R+         L  P +  +DD
Sbjct: 301 ENSKQFLKENEEITLAIEKQIREYHS------LDTPKVAPEDD 337


>gi|302380676|ref|ZP_07269141.1| RecA protein [Finegoldia magna ACS-171-V-Col3]
 gi|303233666|ref|ZP_07320320.1| RecA protein [Finegoldia magna BVS033A4]
 gi|302311619|gb|EFK93635.1| RecA protein [Finegoldia magna ACS-171-V-Col3]
 gi|302495100|gb|EFL54852.1| RecA protein [Finegoldia magna BVS033A4]
          Length = 361

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/327 (63%), Positives = 264/327 (80%), Gaps = 5/327 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD+    N  +K +AL  A + I++ +GKG+IM+LG    + + IE + +G++ LD+ALG
Sbjct: 1   MDFS---NGTEKDQALREAFASIEKQFGKGSIMKLGDH--VQKDIEAIPTGAINLDVALG 55

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG P+GR++EIYGPESSGKTTLALH +A++QK GGT AF+DAEHALD+IYA+ LGVD  
Sbjct: 56  IGGLPRGRVIEIYGPESSGKTTLALHVVAEAQKMGGTAAFIDAEHALDAIYAKNLGVDTD 115

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL+ISQPDTGEQAL I D LVRS AVDII+IDSVAAL PRAEIEG+MG+S  G+QARLMS
Sbjct: 116 NLIISQPDTGEQALGICDSLVRSSAVDIIIIDSVAALVPRAEIEGNMGDSHVGLQARLMS 175

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT  IS+S C ++FINQ+R K+G+MFG+PE TTGG ALKFYSSVR++IRR  +I+
Sbjct: 176 QALRKLTGVISKSNCTVIFINQLREKVGIMFGNPEVTTGGRALKFYSSVRIEIRRGEAIR 235

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             D I GN+T+VK+VKNK+A PFKQVEFDIMYGEGIS  G ++DL     ++ K+GAW+S
Sbjct: 236 KGDDIVGNRTKVKIVKNKVAPPFKQVEFDIMYGEGISKIGTILDLATDCKVIKKAGAWYS 295

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENI 327
           ++ ++LGQGRENSK+FL EN +I E I
Sbjct: 296 YEEEKLGQGRENSKVFLEENPKILEEI 322


>gi|299534706|ref|ZP_07048036.1| protein recA [Lysinibacillus fusiformis ZC1]
 gi|298729794|gb|EFI70339.1| protein recA [Lysinibacillus fusiformis ZC1]
          Length = 354

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 209/331 (63%), Positives = 268/331 (80%), Gaps = 2/331 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  ALE AL QI++ +GKG+IM+LG +  +   I   SSGSL LD ALG+GG+P+GRI+
Sbjct: 3   DRKAALEQALKQIEKNFGKGSIMKLGEKTDLE--IATSSSGSLALDAALGVGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ Q +GG  AF+DAEHALD IYA+KLGV++  LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVALHAIAEVQASGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+DIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R KIGVMFG+PETT GG ALKFYSSVRL++RR  +IK  + I GN+T
Sbjct: 181 NKSKTIAIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEAIKQGNDIVGNRT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++K+VKNK+A PF+  E DIMYGEGIS  GE +DLGV+  IV KSG+W+++  +RLGQGR
Sbjct: 241 KIKIVKNKVAPPFRTAEVDIMYGEGISKEGETVDLGVELDIVQKSGSWYAYGDERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           EN+K +L+EN  + E+I + +R + G+ A S
Sbjct: 301 ENAKQYLKENTAVLEDIANKIRASYGIAASS 331


>gi|124008321|ref|ZP_01693016.1| RecA protein [Microscilla marina ATCC 23134]
 gi|123986110|gb|EAY25946.1| RecA protein [Microscilla marina ATCC 23134]
          Length = 359

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/326 (63%), Positives = 267/326 (81%), Gaps = 3/326 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  +K KAL+  L ++ + YGKG +M+L S   + E +EV+ +GSLGLDIALG+GG P+G
Sbjct: 5   NTTEKLKALQMTLEKLDKAYGKGTVMRL-SDEKVVE-VEVIPTGSLGLDIALGVGGIPRG 62

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R++EIYGPESSGKTTLA+H IA++QK GG  AFVDAEHA D  YA KLG++ +NLLISQP
Sbjct: 63  RVIEIYGPESSGKTTLAMHCIAEAQKLGGIAAFVDAEHAFDKTYAEKLGINTENLLISQP 122

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI + L+RSGA+D++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT
Sbjct: 123 DNGEQALEIAEHLIRSGAIDLMVIDSVAALVPKAEIEGEMGDSKMGLQARLMSQALRKLT 182

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK-DSIT 246
            +I+++ C  +FINQ+R KIGVMFG+PETTTGGNALKFY+S+R+DIRR+G IK+  D+IT
Sbjct: 183 GTINKTSCSCIFINQLREKIGVMFGNPETTTGGNALKFYASIRMDIRRIGQIKESADNIT 242

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFK VEFDIMYG+GIS  GE++DLGV+  I+ KSG+WFS+KG +L
Sbjct: 243 GNRTRVKVVKNKVAPPFKVVEFDIMYGQGISKVGEILDLGVELDIIKKSGSWFSYKGSKL 302

Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332
            QGR+  K  + +N ++ E +E  +R
Sbjct: 303 DQGRDKVKALISDNPDLFEELEIAIR 328


>gi|161728767|dbj|BAF94200.1| recombinase A [Pseudochrobactrum glaciei]
          Length = 255

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/257 (81%), Positives = 239/257 (92%), Gaps = 2/257 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL+AALSQI+R +GKG+IM+LG Q  + E IE V +GSL LDIALG+GG PKGRIVEIYG
Sbjct: 1   ALDAALSQIERQFGKGSIMRLG-QSEVVE-IETVPTGSLSLDIALGVGGLPKGRIVEIYG 58

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDTGEQAL
Sbjct: 59  PESSGKTTLALHTIAEAQKKGGMCAFVDAEHALDPVYARKLGVDLESLLISQPDTGEQAL 118

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSGA+D++VIDSVAALTPRAEIEGDMG+SLPG+QARLMSQALRKLT+SISRS 
Sbjct: 119 EITDTLVRSGAIDVLVIDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTASISRSN 178

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D + GNQTRVKV
Sbjct: 179 CMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDEVVGNQTRVKV 238

Query: 255 VKNKMASPFKQVEFDIM 271
           VKNK+A PFKQVEFDIM
Sbjct: 239 VKNKLAPPFKQVEFDIM 255


>gi|149688798|gb|ABR27810.1| RecA [Candidatus Pelagibacter ubique]
          Length = 289

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 203/291 (69%), Positives = 254/291 (87%), Gaps = 2/291 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG + ++   +E VS+GSL LD+ALGIGG PKGR++E+YGPESSGKTTLAL  +
Sbjct: 1   KGSVMKLGQRRAM--DVESVSTGSLSLDVALGIGGLPKGRVIEVYGPESSGKTTLALQVL 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAF+DAEHALD IYA+KLGVD + LLISQPDTGEQALEI D LV+SG++ +
Sbjct: 59  AEAQKAGGICAFIDAEHALDPIYAKKLGVDTEELLISQPDTGEQALEIADTLVKSGSISV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAALTPRAEIEG+MG+   G+Q+RLMSQALRKLT SIS +  +++FINQ+RMKIG
Sbjct: 119 IVIDSVAALTPRAEIEGEMGDHHVGLQSRLMSQALRKLTGSISSTNTMMIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFGSPETT+GGNALKFYSSVR+DIRR+G+IK+ D I GN TRVKVVKNK+A PFK VEF
Sbjct: 179 VMFGSPETTSGGNALKFYSSVRMDIRRIGAIKNGDEIIGNSTRVKVVKNKVAPPFKVVEF 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
           D+MYG+GIS  GEL+DLG KA IV+K+GAW+++KG+++GQGREN+K +L +
Sbjct: 239 DLMYGKGISKVGELVDLGAKADIVEKAGAWYAYKGEKIGQGRENAKTYLEQ 289


>gi|182416662|ref|ZP_02948069.1| protein RecA [Clostridium butyricum 5521]
 gi|182379488|gb|EDT76977.1| protein RecA [Clostridium butyricum 5521]
          Length = 359

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 205/322 (63%), Positives = 267/322 (82%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KA+E+A+S I++ +GKG++M+LG        ++ +S+G L LDIALGIGG PKGRI+
Sbjct: 7   EKLKAIESAMSNIEKQFGKGSVMKLGDHN--VTTMDAISTGCLDLDIALGIGGVPKGRII 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+AL   A++QK GG   ++DAEHALD  YA+K+GVD+++L+ISQPDTG
Sbjct: 65  EIYGPESSGKTTVALSIAAEAQKKGGAVGYIDAEHALDPSYAQKIGVDVESLIISQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI + LVRSGA+D++V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL  +I
Sbjct: 125 EQCLEIAEALVRSGAIDVLVVDSVAALVPKAEIEGEMGDSHIGLQARLMSQALRKLAGTI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++ C+ +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLDIRR+ SIK  DSI GN+T
Sbjct: 185 NKTNCVAIFINQLREKVGVMFGSPETTTGGRALKFYASVRLDIRRIDSIKQGDSIIGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV+KNK+A PF+Q EFDIMY EGIS  G ++D+GVK  IV KSGAWFS+   RLGQGR
Sbjct: 245 RVKVMKNKVAPPFRQAEFDIMYNEGISRTGNVLDVGVKEEIVQKSGAWFSYGDVRLGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           ENSK++L++N ++A +IE+ +R
Sbjct: 305 ENSKVYLKDNPDVALDIENQIR 326


>gi|227495813|ref|ZP_03926124.1| recombination protein A [Actinomyces urogenitalis DSM 15434]
 gi|226834635|gb|EEH67018.1| recombination protein A [Actinomyces urogenitalis DSM 15434]
          Length = 399

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 203/319 (63%), Positives = 260/319 (81%), Gaps = 2/319 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+SKAL  ALSQI + +GKG++M+LG        + V+ +GS+ LD+ALG+GG P+GRI+
Sbjct: 8   DRSKALATALSQIDKAFGKGSVMRLGDD--TRPPVSVIPTGSIALDVALGVGGLPRGRII 65

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +QK GG  AF+DAEHALD +YA+ LGVD  NLL+SQPDTG
Sbjct: 66  EIYGPESSGKTTVALHAVASAQKAGGNAAFIDAEHALDPVYAKALGVDTDNLLVSQPDTG 125

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSG +DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 126 EQALEIADMLIRSGGLDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 185

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S +    +FINQ+R KIGV FG+PETTTGG ALKFY+SVR+D+RR+ ++KD D   GN+T
Sbjct: 186 SATGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRIDVRRIQTLKDGDQPVGNRT 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R KVVKNKMA PFKQ EFDI+YG+GIS  G L+D+GV+  IV KSGAWF++   +LGQG+
Sbjct: 246 RAKVVKNKMAPPFKQAEFDIVYGQGISREGSLLDMGVENGIVRKSGAWFTYGTDQLGQGK 305

Query: 311 ENSKIFLRENIEIAENIES 329
           EN++ FL++N E+A+ IE+
Sbjct: 306 ENARTFLKDNPELADEIEN 324


>gi|331000526|ref|ZP_08324197.1| RecA protein [Parasutterella excrementihominis YIT 11859]
 gi|329571290|gb|EGG52979.1| RecA protein [Parasutterella excrementihominis YIT 11859]
          Length = 367

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/321 (64%), Positives = 265/321 (82%), Gaps = 2/321 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + KAL+ AL QI + +GK AI+ +GSQ    + ++VVS+GS  LD+ALG+GG P+GRIVE
Sbjct: 20  RKKALKMALDQISKQFGKDAILSMGSQPD--QNLDVVSTGSFTLDLALGVGGLPRGRIVE 77

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH +A+ QK GGTCAF+DAEHALD  YA+ LGV + +LL+SQPD+GE
Sbjct: 78  IYGPESSGKTTLTLHILAEMQKLGGTCAFIDAEHALDVKYAKALGVKVDDLLLSQPDSGE 137

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++VIDSVAAL PR+EIEGDMGE+LPG+QARLMSQALRKLTSSI 
Sbjct: 138 QALEITDALVRSGAVDLVVIDSVAALVPRSEIEGDMGEALPGLQARLMSQALRKLTSSIK 197

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S  ++VFINQ+R KIGV++GSPETTTGGNALKFY+++R+DIRR G IK  D I GN+TR
Sbjct: 198 KSNTLVVFINQVRQKIGVVYGSPETTTGGNALKFYATIRMDIRRTGGIKQGDEILGNETR 257

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PFKQ EF+I+YG+GIS  GE+ID+G    I +KSGAW+S++G ++GQG+ 
Sbjct: 258 VKVVKNKVAPPFKQAEFEIIYGQGISREGEIIDIGTDMDIFNKSGAWYSYQGNKIGQGKA 317

Query: 312 NSKIFLRENIEIAENIESLLR 332
            ++ +L+ + E  + IE  ++
Sbjct: 318 AAREWLKSHPEEMKMIEEQIK 338


>gi|225936942|emb|CAJ82767.1| recA recombinase [Enterococcus asini]
          Length = 348

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 205/327 (62%), Positives = 267/327 (81%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ YGKGA+M+LG +  I + I V+ SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKTALDAALKKIEKNYGKGAVMKLGEK--IDQQIAVIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK+GGT AF+DAEHALD +YA+KLGVD+  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKSGGTAAFIDAEHALDPLYAQKLGVDIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVVDSVAALVPRAEIEGEMGDSHMGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R KIGVMFG+PETT GG ALKFY+++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKIGVMFGNPETTPGGRALKFYATIRLEVRRAEQLKSGTDIIGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+ V   IVDKSGAW+++KG R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKLAEVDIMYGQGISQEGELLDMAVDKDIVDKSGAWYAYKGDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           +N+K +++E+ E+   I  L+R   G+
Sbjct: 302 DNAKNYMKEHPEMKAEINQLVRAAYGI 328


>gi|258562191|gb|ACV81816.1| recombinase A [Burkholderia cenocepacia]
          Length = 297

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 213/295 (72%), Positives = 259/295 (87%), Gaps = 1/295 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T
Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G++
Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEK 297


>gi|71089156|gb|AAZ23656.1| RecA [uncultured Burkholderia sp.]
 gi|71089160|gb|AAZ23658.1| RecA [uncultured Burkholderia sp.]
          Length = 288

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 205/289 (70%), Positives = 253/289 (87%), Gaps = 1/289 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG++M+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LL+SQPDTGEQALEI D LVR
Sbjct: 60  LTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNELLVSQPDTGEQALEIADALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G R+GQG++
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYSGDRIGQGKD 288


>gi|294788715|ref|ZP_06753956.1| protein RecA [Simonsiella muelleri ATCC 29453]
 gi|294483197|gb|EFG30883.1| protein RecA [Simonsiella muelleri ATCC 29453]
          Length = 363

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 217/337 (64%), Positives = 280/337 (83%), Gaps = 7/337 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +KS+AL AAL+QI++ +GKGA+M++ GS     + ++V+S+GSL LD+ALG+GG P+GRI
Sbjct: 16  EKSQALAAALAQIEKNFGKGAVMKMDGSHQE--DNLQVISTGSLTLDLALGVGGLPRGRI 73

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEI+GPESSGKTTL L TIAQ QK GGTCAF+DAE+A D +YARKLGV +++LL+SQPDT
Sbjct: 74  VEIFGPESSGKTTLCLETIAQCQKNGGTCAFIDAENAFDPVYARKLGVKVEDLLVSQPDT 133

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSG VD++VIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT S
Sbjct: 134 GEQALEICDMLVRSGGVDMVVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGS 193

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--DSITG 247
           I ++  ++VFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIR    IK K  +   G
Sbjct: 194 IKKTNTLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRGTTQIKGKEGEEPIG 253

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
            +T+VKV+KNK+A PF+  EFDI+YGEG+S+ GEL+DLGVK  ++ KSGAWFS+ G ++G
Sbjct: 254 KETKVKVIKNKVAPPFRTAEFDILYGEGVSYEGELVDLGVKTDVIQKSGAWFSYNGAKIG 313

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
           QG++N +I+L+EN E+A  I+  +R ++GL  D L++
Sbjct: 314 QGKDNVRIWLKENPEVAAEIDQKIRSHSGL--DDLIE 348


>gi|167855856|ref|ZP_02478607.1| recombinase A [Haemophilus parasuis 29755]
 gi|167853006|gb|EDS24269.1| recombinase A [Haemophilus parasuis 29755]
          Length = 372

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/344 (63%), Positives = 276/344 (80%), Gaps = 2/344 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K +AL+AAL+QI++ +GKG+IM+LG    +   IE VS+GSLGLD+ALGIGG P GRIVE
Sbjct: 22  KQQALDAALAQIEKQFGKGSIMKLGQTEQL--DIESVSTGSLGLDLALGIGGLPMGRIVE 79

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL L  IAQ+QK   TCAF+DAEHALD +YAR LGV+   LLISQPD GE
Sbjct: 80  IYGPESSGKTTLTLSLIAQAQKGNKTCAFIDAEHALDPVYARNLGVNTDELLISQPDNGE 139

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT++I 
Sbjct: 140 QALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIK 199

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
            + C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G +KD D I G++T+
Sbjct: 200 NTNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRCGVVKDGDEIIGSETK 259

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF++V+FDIMYGEGIS   EL+ L      + KSGAWFS+ G ++GQG+ 
Sbjct: 260 VKVVKNKVAPPFREVQFDIMYGEGISRMNELLILAEANGFIKKSGAWFSYDGTKIGQGKN 319

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           N+  +L+EN EIA+ +E  +R       +S+L+  A ++ D++D
Sbjct: 320 NAVKWLKENPEIADKLEQEIRNTLASNPNSVLKATASDSNDESD 363


>gi|298372181|ref|ZP_06982171.1| protein RecA [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275085|gb|EFI16636.1| protein RecA [Bacteroidetes oral taxon 274 str. F0058]
          Length = 351

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/320 (64%), Positives = 262/320 (81%), Gaps = 2/320 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            DK KAL+ A+ +I++ +GKG IM+LG      E + V+ SGS+GL+ ALG+GG+P+GRI
Sbjct: 10  ADKLKALQLAMDKIEKDHGKGTIMKLGDDN--IEDVSVIPSGSIGLNAALGVGGYPRGRI 67

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLA+H IA++QK GG  A +DAEHA D  YA++LGVD+ NLLISQPD+
Sbjct: 68  IEIYGPESSGKTTLAIHAIAEAQKAGGIAAIIDAEHAFDRFYAKQLGVDVDNLLISQPDS 127

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D L+RS A+DI+VIDSVAALTP+AE+EGDMG++  G+QARLMSQALRKLT+S
Sbjct: 128 GEQALEIADQLIRSSALDILVIDSVAALTPKAELEGDMGDNKVGLQARLMSQALRKLTAS 187

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ISR+    +FINQ+R KIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK+ D+  GNQ
Sbjct: 188 ISRTNTTCIFINQLREKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAIKEGDTHFGNQ 247

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PF++ EFDIM+G+GIS  GE+IDLGV   I+ KSG+WFS+   +L QG
Sbjct: 248 TRVKVVKNKVAPPFRKAEFDIMFGQGISRSGEIIDLGVDYGIIKKSGSWFSYGDSKLAQG 307

Query: 310 RENSKIFLRENIEIAENIES 329
           R+ SK  + EN E+ + +E+
Sbjct: 308 RDASKKVIEENPELTQELEA 327


>gi|163802980|ref|ZP_02196867.1| recombinase A [Vibrio sp. AND4]
 gi|159173270|gb|EDP58098.1| recombinase A [Vibrio sp. AND4]
          Length = 347

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 205/336 (61%), Positives = 272/336 (80%), Gaps = 4/336 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKKKALAAALGQIEKQFGKGSIMCLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++V+DSV ALTP+AEIE +MG+S  G+QAR++ QA+RKLT +I
Sbjct: 122 EQALEICDALARSGAIDVMVVDSVTALTPKAEIESEMGDSHMGLQARMLFQAMRKLTCNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    I+YG+G +  GEL+DLGVK  +V+K+GAW+S++G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEAHTQILYGQGFNREGELVDLGVKHKLVEKAGAWYSYQGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
            N+  +LRE+ E A+ I++ LR+   L++ +L + P
Sbjct: 302 ANACNYLREHPEAAKTIDAKLREM--LLSPALPEAP 335


>gi|24214879|ref|NP_712360.1| recombinase A [Leptospira interrogans serovar Lai str. 56601]
 gi|45657611|ref|YP_001697.1| recombinase A [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|26454660|sp|P52277|RECA_LEPIN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|60392994|sp|P62217|RECA_LEPIC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|24195902|gb|AAN49378.1| recombinase A [Leptospira interrogans serovar Lai str. 56601]
 gi|45600851|gb|AAS70334.1| recombinase A [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 366

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 212/325 (65%), Positives = 268/325 (82%), Gaps = 3/325 (0%)

Query: 10  VDKSK--ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           VD SK  A+E A+SQI++ +GKG+IM+LGS  S  + ++V+ SGSL LDIALGIGG+P G
Sbjct: 16  VDDSKKLAIEQAMSQIEKQFGKGSIMKLGSD-SAKQTVQVIPSGSLDLDIALGIGGYPIG 74

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTL L  IA++QK GG  AF+DAEHALD  YA+KLGV++  LL+SQP
Sbjct: 75  RIVEIYGPESSGKTTLTLSAIAEAQKRGGVAAFIDAEHALDPSYAKKLGVNIDELLVSQP 134

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GE+ALEI + LVRS A+D+IVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT
Sbjct: 135 DNGEEALEICESLVRSNAIDLIVIDSVAALVPKAEIEGDMGDSHMGLQARLMSQALRKLT 194

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            +I++SK +++FINQ+RMKIGVMFGSPETTTGGNALKFY SVRLDIR++ +IK+K+   G
Sbjct: 195 GTIAKSKTVVIFINQIRMKIGVMFGSPETTTGGNALKFYCSVRLDIRKIETIKEKEESVG 254

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+ RVKVVKNK A PFKQ EFDI++  GIS  G L+DLGVK  I+ K+GAW+S+  +++G
Sbjct: 255 NRVRVKVVKNKCAPPFKQAEFDIIFNAGISREGSLVDLGVKHDIIHKAGAWYSYNTEKIG 314

Query: 308 QGRENSKIFLRENIEIAENIESLLR 332
           QG+E +K +L+ N EIA  IE+++R
Sbjct: 315 QGKEAAKEYLKNNPEIALTIENMVR 339


>gi|86141084|ref|ZP_01059643.1| RecA [Leeuwenhoekiella blandensis MED217]
 gi|85833026|gb|EAQ51475.1| RecA [Leeuwenhoekiella blandensis MED217]
          Length = 336

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/318 (65%), Positives = 262/318 (82%), Gaps = 3/318 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+  L ++ + YGKG +M++G   +I E +E +S+GSLGLD+ALG+GG PKGRI+E
Sbjct: 8   KLKALKLTLDKMDKTYGKGTVMKMGDN-AIIE-VESISTGSLGLDMALGVGGLPKGRIIE 65

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA++QK GG  AF+DAEHA D  YA KLGVD++NL+ISQPD GE
Sbjct: 66  IYGPESSGKTTLTLHAIAEAQKKGGIAAFIDAEHAFDRFYADKLGVDIENLIISQPDNGE 125

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD L+RSGA+DIIV+DSVAALTP++EIEG+MG+S  G+ ARLMSQALRKLT SIS
Sbjct: 126 QALEITDNLIRSGAIDIIVVDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTGSIS 185

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQT 250
           ++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IKD +  + GN+T
Sbjct: 186 KTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKDSNGEVQGNKT 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EFDIMYGEGIS  GE++D+GV   I+ KSG+WFS++  +LGQGR
Sbjct: 246 RVKVVKNKVAPPFRQAEFDIMYGEGISKVGEILDIGVDYEIIKKSGSWFSYQDTKLGQGR 305

Query: 311 ENSKIFLRENIEIAENIE 328
           +  K  L++N ++ E +E
Sbjct: 306 DAVKAILKDNPDLLEELE 323


>gi|229490860|ref|ZP_04384695.1| protein RecA [Rhodococcus erythropolis SK121]
 gi|229322250|gb|EEN88036.1| protein RecA [Rhodococcus erythropolis SK121]
          Length = 349

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/330 (62%), Positives = 268/330 (81%), Gaps = 2/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+ AL+QI + +GKG++M+LG    + + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 11  DRDKALDLALAQIDKNFGKGSVMRLGE--GVRQPIAVIPTGSIALDVALGIGGLPRGRVI 68

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA KLGVD   LL+SQPDTG
Sbjct: 69  EIYGPESSGKTTVALHAVANAQANGGIAAFIDAEHALDPDYAAKLGVDTDALLVSQPDTG 128

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 129 EQALEITDMLIRSGALDIVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGAM 188

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S   ++FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     GN+T
Sbjct: 189 NNSGTTVIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDIRRIETLKDGTDAVGNRT 248

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+W++++G +LGQG+
Sbjct: 249 RVKVVKNKVAPPFKQAEFDILYGQGISKEGSLIDMGVEHGFIRKSGSWYTYEGDQLGQGK 308

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           EN++ FL EN +I + IE  +++  G+ AD
Sbjct: 309 ENARKFLLENTDIRDEIEKKIKEKLGIGAD 338


>gi|163846932|ref|YP_001634976.1| recombinase A [Chloroflexus aurantiacus J-10-fl]
 gi|222524755|ref|YP_002569226.1| recombinase A [Chloroflexus sp. Y-400-fl]
 gi|172045669|sp|O52394|RECA_CHLAA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|254790428|sp|B9LCN0|RECA_CHLSY RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|163668221|gb|ABY34587.1| recA protein [Chloroflexus aurantiacus J-10-fl]
 gi|222448634|gb|ACM52900.1| recA protein [Chloroflexus sp. Y-400-fl]
          Length = 351

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/343 (60%), Positives = 269/343 (78%), Gaps = 3/343 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL A ++QI R +GKG+IM++G   S    IE + +GS+ LDIALGIGG P+GR+V
Sbjct: 6   EKEKALAATMAQIDRKFGKGSIMKMGEASSRL-AIEAIPTGSIALDIALGIGGVPRGRVV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTLA H IA++QK GG CAF+DAEHA D +YA + GV++ +LL+SQPDTG
Sbjct: 65  EIFGPESSGKTTLAQHIIAEAQKMGGVCAFIDAEHAFDPVYAARCGVNIDDLLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI +MLVRS A+D+IVIDSVAAL PRAEIEG+MG+S+PGMQARLMSQALRKL+ +I
Sbjct: 125 EQALEICEMLVRSNAIDVIVIDSVAALVPRAEIEGEMGDSMPGMQARLMSQALRKLSGAI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S+ +++FINQ+RMKIGVMFGSPETTTGG ALKFY+SVRLDIRRV ++K      G++ 
Sbjct: 185 SKSRTVVIFINQLRMKIGVMFGSPETTTGGQALKFYASVRLDIRRVETLKQGQEAIGSRV 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV+KNK+A PF+Q EFDI+  EGIS  G +ID+G +  I+ KSGAWF     RLGQGR
Sbjct: 245 RVKVIKNKVAPPFRQAEFDILANEGISREGNIIDIGTELGIIRKSGAWFYLGEDRLGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           EN + FL+ N  + + IE L++  A  + +  +  P+++  DD
Sbjct: 305 ENVREFLKNNPALTDEIERLIKAQA--LTNPTVIAPSVDVGDD 345


>gi|50082593|gb|AAT69994.1| RecA [Propionibacterium acnes]
 gi|327330235|gb|EGE71984.1| protein RecA [Propionibacterium acnes HL097PA1]
          Length = 348

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/327 (63%), Positives = 262/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL  AL QI++ +GKG+IM+LG Q ++   I  + +GS+ LD+ALG+GG P+GRIV
Sbjct: 6   DREKALATALQQIEKQHGKGSIMRLGEQETV--KIAAIPTGSVALDVALGVGGLPRGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA +Q  GG CAF+DAEHALD  YARKLGVD  +LL+SQPD G
Sbjct: 64  EIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPEYARKLGVDTNSLLVSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGA+++IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADTLVRSGALELIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + +    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RRV ++KD   + GN+T
Sbjct: 184 NAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRVETLKDGSEMVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV KNK+A PFKQ EFDI+YG+GIS  G LID+GV   I+ KSG+WFS+  ++LGQG+
Sbjct: 244 RVKVAKNKVAPPFKQAEFDILYGQGISREGSLIDMGVDCGIITKSGSWFSYNNEQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN + FLR N ++A  IE  +  + GL
Sbjct: 304 ENVRKFLRGNPDVANEIEDKILTHLGL 330


>gi|159037027|ref|YP_001536280.1| recombinase A [Salinispora arenicola CNS-205]
 gi|189039604|sp|A8M7V5|RECA_SALAI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|157915862|gb|ABV97289.1| recA protein [Salinispora arenicola CNS-205]
          Length = 348

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 205/320 (64%), Positives = 263/320 (82%), Gaps = 2/320 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+ +AL+ AL+QI + +GKG++M+LG +  +     VV +GS+ LD+ALG+GG P+GR
Sbjct: 4   VPDRERALDLALAQIDKQFGKGSVMRLGERPVVQTA--VVPTGSIALDVALGVGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++E+YGPESSGKTT+ALH +A +Q+ GG  AFVDAEHALD  YAR LGVD   LL+SQPD
Sbjct: 62  VIEVYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHALDPEYARALGVDTDALLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DMLVRSGA+DII+IDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T 
Sbjct: 122 TGEQALEIADMLVRSGALDIIIIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ S+KD   + GN
Sbjct: 182 VLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDVRRIESLKDGTDVVGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A+PFKQ EFDIMYG+GIS  G LID+GV+ +I+ KSGAW++++G +LGQ
Sbjct: 242 RTRVKVVKNKVAAPFKQAEFDIMYGKGISREGSLIDVGVEQAIIRKSGAWYTYEGDQLGQ 301

Query: 309 GRENSKIFLRENIEIAENIE 328
           G+E ++ FLREN ++A  IE
Sbjct: 302 GKEKAREFLRENPDVAAEIE 321


>gi|229487126|emb|CAX33875.1| recombinase A [Pseudochrobactrum sp. Sa 25]
          Length = 247

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 205/246 (83%), Positives = 232/246 (94%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GSL LDIALG+GG PKGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD 
Sbjct: 2   TGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTIAEAQKKGGMCAFVDAEHALDP 61

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YARKLGVDL++LLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIEGDMG+
Sbjct: 62  VYARKLGVDLESLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGDMGD 121

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           SLPG+QARLMSQALRKLT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SV
Sbjct: 122 SLPGLQARLMSQALRKLTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASV 181

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
           RLDIRR+G+IKD+D + GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA
Sbjct: 182 RLDIRRIGAIKDRDEVVGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKA 241

Query: 290 SIVDKS 295
            IV+K+
Sbjct: 242 GIVEKA 247


>gi|302877752|ref|YP_003846316.1| recA protein [Gallionella capsiferriformans ES-2]
 gi|302580541|gb|ADL54552.1| recA protein [Gallionella capsiferriformans ES-2]
          Length = 358

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/327 (66%), Positives = 278/327 (85%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AALSQI++ +GKG+IM+LG +  + + I+VVS+GSLGLDIALG+GG P+GR++
Sbjct: 4   NKSKALMAALSQIEKQFGKGSIMRLG-ENEVAQDIQVVSTGSLGLDIALGVGGLPRGRVI 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLAL  IA+ QK GGT AF+DAEHALD  YA+KLGV +++LLISQPD G
Sbjct: 63  EIYGPESSGKTTLALQVIAEMQKLGGTAAFIDAEHALDPQYAQKLGVKVEDLLISQPDNG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS +VD++VIDSVAALTP+AEIEG+MG+S  G+ ARLMSQALRKLT++I
Sbjct: 123 EQALEITDMLVRSASVDVVVIDSVAALTPKAEIEGEMGDSQMGLHARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK  D + GN+T
Sbjct: 183 KRSNTLVIFINQLRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKKGDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK+  FDI+YGEG S  GE+IDLGV   +++KSG+W+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVAPPFKEALFDILYGEGTSREGEIIDLGVLHKLIEKSGSWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           +N + FLR   E+A  IE+ +R   G+
Sbjct: 303 DNVREFLRTRSEMAFEIENKIRTLVGV 329


>gi|31540547|gb|AAP49236.1| RecA [Mycobacterium fortuitum]
          Length = 322

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 204/318 (64%), Positives = 264/318 (83%), Gaps = 2/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 7   DREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRVV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+T
Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG+
Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIE 328
           EN++ FL EN+++A  IE
Sbjct: 305 ENARKFLLENVDVANEIE 322


>gi|297559643|ref|YP_003678617.1| recA protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296844091|gb|ADH66111.1| recA protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 378

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 205/327 (62%), Positives = 265/327 (81%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE AL+QI+R +GKG+IM+LG        +E + +G++ LD+ALGIGG P+GR+V
Sbjct: 5   DRDKALETALAQIERQFGKGSIMRLGDDDR--PPVESIPTGAIALDVALGIGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHALD  YA+K+GV+  +LL+SQPDTG
Sbjct: 63  EIYGPESSGKTTVALHAVASAQRMGGIAAFVDAEHALDPEYAKKIGVNTDDLLLSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGAV IIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+  ++
Sbjct: 123 EQALEIVDMLIRSGAVSIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKIAGAL 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++    +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+T
Sbjct: 183 HQTNTTAIFINQLREKVGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDI+YG G+S  G LIDLGV+  IV KSGAW++++G +LGQG+
Sbjct: 243 RVKVVKNKVAPPFKQAEFDILYGVGVSREGSLIDLGVEHGIVRKSGAWYTYEGTQLGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN++ FLREN ++A  +E  +++  G+
Sbjct: 303 ENARNFLRENADMANEVEKKIKEKLGV 329


>gi|150008088|ref|YP_001302831.1| recombinase A [Parabacteroides distasonis ATCC 8503]
 gi|255014926|ref|ZP_05287052.1| recombinase A [Bacteroides sp. 2_1_7]
 gi|298376559|ref|ZP_06986514.1| protein RecA [Bacteroides sp. 3_1_19]
 gi|149936512|gb|ABR43209.1| RecA [Parabacteroides distasonis ATCC 8503]
 gi|298266437|gb|EFI08095.1| protein RecA [Bacteroides sp. 3_1_19]
          Length = 350

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/322 (63%), Positives = 264/322 (81%), Gaps = 2/322 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            DK KAL AA+ +I++ YGKG+IM+LG +    E IEV+ +GS+ L+ ALG+GG+PKGRI
Sbjct: 23  TDKLKALRAAMDKIEKNYGKGSIMKLGDEN--IEDIEVIPTGSIALNAALGVGGYPKGRI 80

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+A+H IA++QK GG  AF+DAEHA D  YA KLGVD++NL ISQPD 
Sbjct: 81  VEIYGPESSGKTTIAIHAIAEAQKKGGIAAFIDAEHAFDRFYAEKLGVDVENLWISQPDN 140

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + L+RS AVDIIVIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT++
Sbjct: 141 GEQALEIAEQLIRSSAVDIIVIDSVAALTPKAEIEGDMGDSKMGLQARLMSQALRKLTAA 200

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I+++    +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR +G +KD D I GNQ
Sbjct: 201 INKTNTTCIFINQLRDKIGVMFGNPETTTGGNALKFYASVRLDIRSIGKLKDGDEIKGNQ 260

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            RVKV+KNK+A PF++ EFDIM+G+GIS  GE+IDLG + +I+ KSG+W+S+   +LGQG
Sbjct: 261 VRVKVIKNKVAPPFRKAEFDIMFGQGISRSGEIIDLGSELNIIKKSGSWYSYNDTKLGQG 320

Query: 310 RENSKIFLRENIEIAENIESLL 331
           R+ +K  + +N E+A+ +  L+
Sbjct: 321 RDAAKQCVEDNPELADELSELI 342


>gi|31540549|gb|AAP49237.1| RecA [Mycobacterium gadium]
          Length = 322

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 205/318 (64%), Positives = 264/318 (83%), Gaps = 2/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE AL+QI++ +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 6   DREKALELALAQIEKNHGKGSVMRLGEE--VRQPISVIPTGSIALDVALGIGGLPRGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+T
Sbjct: 184 SNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   V KSG+WF+++G++LGQG+
Sbjct: 244 RVKVVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEHGFVRKSGSWFTYEGEQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIE 328
           EN++ FL EN ++A  IE
Sbjct: 304 ENARNFLLENPDVANEIE 321


>gi|116749954|ref|YP_846641.1| recA protein [Syntrophobacter fumaroxidans MPOB]
 gi|166220688|sp|A0LLA4|RECA_SYNFM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|116699018|gb|ABK18206.1| recA protein [Syntrophobacter fumaroxidans MPOB]
          Length = 343

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 211/332 (63%), Positives = 273/332 (82%), Gaps = 2/332 (0%)

Query: 7   MNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           M  VD + +A++ A+SQI+R+ GKGAIM+LG      E I V+S+G L LD+ALGIGG  
Sbjct: 1   MGAVDERQRAIDTAVSQIERMCGKGAIMRLGEGAQNVE-IPVISTGCLSLDLALGIGGVA 59

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+EI+GPESSGKTTLALH +A++QK GG  AF+DAEHALD  YARKLGV +++LLIS
Sbjct: 60  RGRIMEIFGPESSGKTTLALHVVAEAQKLGGLAAFIDAEHALDVNYARKLGVQVEDLLIS 119

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI ++LVRS A+D+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRK
Sbjct: 120 QPDYGEQALEIAEILVRSNAIDVIVVDSVAALVPKAEIEGEMGDPHVGLQARLMSQALRK 179

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           L SSIS+S+  ++FINQ+RMKIGVM+GSPETTTGGNALKFY+++RLDIRRVG IKD   +
Sbjct: 180 LVSSISKSRTCVIFINQIRMKIGVMYGSPETTTGGNALKFYATMRLDIRRVGPIKDGQEV 239

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+TRVKVVKNK+A PF++VEFD++YG GIS  G+++DL V++  ++KSG W+S+ G+R
Sbjct: 240 VGNRTRVKVVKNKIAPPFREVEFDVVYGRGISREGDILDLAVESGAIEKSGTWYSYSGER 299

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           LGQGREN+K FLRE+ ++   +E  LR+   L
Sbjct: 300 LGQGRENAKNFLREHPDLLGELERKLREAHNL 331


>gi|297243442|ref|ZP_06927375.1| RecA/RadA DNA recombinase [Gardnerella vaginalis AMD]
 gi|296888689|gb|EFH27428.1| RecA/RadA DNA recombinase [Gardnerella vaginalis AMD]
          Length = 379

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 201/327 (61%), Positives = 265/327 (81%), Gaps = 2/327 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  ALE AL+ ++R YGKG+ M+LG +    + +EV+ +GSL LD ALGIGG P+GRIVE
Sbjct: 23  RQAALETALANVERQYGKGSAMRLGDRP--MQDVEVIPTGSLALDTALGIGGVPRGRIVE 80

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTLALH +A +QK GG  AF+DAEHALD +YARKLGVD   L++SQPD GE
Sbjct: 81  VYGPESSGKTTLALHIVANAQKNGGVAAFIDAEHALDPVYARKLGVDTDALIVSQPDNGE 140

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DML+RSGA+D+IV+DSVAAL P+AEI+GDMG+S  G+QARLMSQALRK+T ++S
Sbjct: 141 QALEIADMLIRSGALDVIVVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKMTGALS 200

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGV FG+PETTTGG ALKFY+SVR+DIRRV +IK+ +   GN+T+
Sbjct: 201 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRMDIRRVSTIKEGEEAVGNRTK 260

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNKMA PFK  EFD++YGEGIS  G +ID+G++A ++ KSG+WF+++G++LGQGRE
Sbjct: 261 VKIVKNKMAPPFKTAEFDVLYGEGISTEGSVIDMGLQAEVIKKSGSWFTYEGEQLGQGRE 320

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLV 338
           N + FL++N  I E I   ++ + GL+
Sbjct: 321 NVRKFLKDNPAITEEISEKVKASLGLM 347


>gi|111225078|ref|YP_715872.1| recombinase A [Frankia alni ACN14a]
 gi|123142675|sp|Q0RDW5|RECA_FRAAA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|111152610|emb|CAJ64351.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Frankia alni ACN14a]
          Length = 346

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/329 (62%), Positives = 266/329 (80%), Gaps = 2/329 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +D+ KAL+ AL+QI + +GKG++M+LG        I+ + +GS+ LD+ALGIGG PKGR+
Sbjct: 5   LDRDKALDNALAQIDKAFGKGSVMRLGDD--TRPPIQAIPTGSIALDVALGIGGLPKGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA KLGVD+ NLL+SQPDT
Sbjct: 63  IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAGKLGVDIDNLLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T++
Sbjct: 123 GEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTAA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+
Sbjct: 183 LANSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTEAVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PF+  EFDI+YG GIS  G LID+GV+  I+ KSGAW+++ G +LGQG
Sbjct: 243 TRVKVVKNKVAPPFRTAEFDIVYGGGISREGSLIDMGVEHGIIRKSGAWYTYDGDQLGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLV 338
           +EN++ FLR+N ++A  IE  +++  G++
Sbjct: 303 KENARSFLRDNPDLANEIEKKIKEKLGIL 331


>gi|149688794|gb|ABR27808.1| RecA [Candidatus Pelagibacter ubique]
          Length = 289

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 203/291 (69%), Positives = 254/291 (87%), Gaps = 2/291 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG + ++   +E VS+GSL LD+ALGIGG PKGR++E+YGPESSGKTTLAL  +
Sbjct: 1   KGSVMKLGQRRAM--DVESVSTGSLSLDVALGIGGLPKGRVIEVYGPESSGKTTLALQVL 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAF+DAEHALD IYA+KLGVD + LLISQPDTGEQALEI D LV+SG++ +
Sbjct: 59  AEAQKAGGICAFIDAEHALDPIYAKKLGVDTEELLISQPDTGEQALEIADTLVKSGSISV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAALTPRAEIEG+MG+   G+Q+RLMSQALRKLT SIS +  +++FINQ+RMKIG
Sbjct: 119 IVIDSVAALTPRAEIEGEMGDHHVGLQSRLMSQALRKLTGSISSTNTMMIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFGSPETT+GGNALKFYSSVR+DIRR+G+IK+ D I GN TRVKVVKNK+A PFK VEF
Sbjct: 179 VMFGSPETTSGGNALKFYSSVRMDIRRIGAIKNGDEIIGNSTRVKVVKNKVAPPFKVVEF 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
           D+MYG+GIS  GEL+DLG KA IV+K+GAW+++KG+++GQGREN+K +L +
Sbjct: 239 DLMYGKGISKVGELVDLGAKADIVEKAGAWYAYKGEKIGQGRENAKXYLEQ 289


>gi|530270|emb|CAA50764.1| RecA [Vibrio cholerae]
          Length = 354

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 204/323 (63%), Positives = 264/323 (81%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM LG   ++   +E +S+GSL LDI LG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMHLGDNRAM--DVETISTGSLSLDITLGSGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI GPESSGKTTL L  IA +Q+ G TCAF+D EHALD +YA+KLGV++  LL+SQPDTG
Sbjct: 62  EILGPESSGKTTLTLELIAAAQREGKTCAFIDTEHALDPVYAKKLGVNIDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+EN EIA+ ++  LR+
Sbjct: 302 ANACKYLKENPEIAKTLDKKLRE 324


>gi|31540563|gb|AAP49244.1| RecA [Mycobacterium porcinum]
          Length = 323

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 204/318 (64%), Positives = 264/318 (83%), Gaps = 2/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 7   DREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRVV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+T
Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG+
Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIE 328
           EN++ FL EN+++A  IE
Sbjct: 305 ENARKFLLENVDVANEIE 322


>gi|303256569|ref|ZP_07342583.1| protein RecA [Burkholderiales bacterium 1_1_47]
 gi|302860060|gb|EFL83137.1| protein RecA [Burkholderiales bacterium 1_1_47]
          Length = 353

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/326 (63%), Positives = 267/326 (81%), Gaps = 2/326 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+   + KAL+ AL QI + +GK AI+ +GSQ    + ++VVS+GS  LD+ALG+GG P+
Sbjct: 1   MDADARKKALKMALDQISKQFGKDAILSMGSQPD--QNLDVVSTGSFTLDLALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYGPESSGKTTL LH +A+ QK GGTCAF+DAEHALD  YA+ LGV + +LL+SQ
Sbjct: 59  GRIVEIYGPESSGKTTLTLHILAEMQKLGGTCAFIDAEHALDVKYAKALGVKVDDLLLSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+GEQALEITD LVRSGAVD++VIDSVAAL PR+EIEGDMGE+LPG+QARLMSQALRKL
Sbjct: 119 PDSGEQALEITDALVRSGAVDLVVIDSVAALVPRSEIEGDMGEALPGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TSSI +S  ++VFINQ+R KIGV++GSPETTTGGNALKFY+++R+DIRR G IK  D I 
Sbjct: 179 TSSIKKSNTLVVFINQVRQKIGVVYGSPETTTGGNALKFYATIRMDIRRTGGIKQGDEIL 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EF+I+YG+GIS  GE+ID+G    I +KSGAW+S++G ++
Sbjct: 239 GNETRVKVVKNKVAPPFKQAEFEIIYGQGISREGEIIDIGTDMDIFNKSGAWYSYQGNKI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332
           GQG+  ++ +L+ + E  + IE  ++
Sbjct: 299 GQGKAAAREWLKSHPEEMKMIEEQIK 324


>gi|237668259|ref|ZP_04528243.1| protein RecA [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|237656607|gb|EEP54163.1| protein RecA [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 359

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 205/322 (63%), Positives = 267/322 (82%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KA+E+A+S I++ +GKG++M+LG        ++ +S+G L LDIALGIGG PKGRI+
Sbjct: 7   EKLKAIESAMSNIEKQFGKGSVMKLGDHN--VTTMDAISTGCLDLDIALGIGGVPKGRII 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+AL   A++QK GG   ++DAEHALD  YA+K+GVD+++L+ISQPDTG
Sbjct: 65  EIYGPESSGKTTVALSIAAEAQKKGGAVGYIDAEHALDPSYAQKIGVDVESLIISQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI + LVRSGA+D++V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL  +I
Sbjct: 125 EQGLEIAEALVRSGAIDVLVVDSVAALVPKAEIEGEMGDSHIGLQARLMSQALRKLAGTI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++ C+ +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLDIRR+ SIK  DSI GN+T
Sbjct: 185 NKTNCVAIFINQLREKVGVMFGSPETTTGGRALKFYASVRLDIRRIDSIKQGDSIIGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV+KNK+A PF+Q EFDIMY EGIS  G ++D+GVK  IV KSGAWFS+   RLGQGR
Sbjct: 245 RVKVMKNKVAPPFRQAEFDIMYNEGISRTGNVLDVGVKEEIVQKSGAWFSYGDVRLGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           ENSK++L++N ++A +IE+ +R
Sbjct: 305 ENSKVYLKDNPDVALDIENQIR 326


>gi|256840733|ref|ZP_05546241.1| recombination protein RecA [Parabacteroides sp. D13]
 gi|262381338|ref|ZP_06074476.1| RecA protein [Bacteroides sp. 2_1_33B]
 gi|256738005|gb|EEU51331.1| recombination protein RecA [Parabacteroides sp. D13]
 gi|262296515|gb|EEY84445.1| RecA protein [Bacteroides sp. 2_1_33B]
          Length = 350

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/322 (63%), Positives = 264/322 (81%), Gaps = 2/322 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            DK KAL AA+ +I++ YGKG+IM+LG +    E IEV+ +GS+ L+ ALG+GG+PKGRI
Sbjct: 23  TDKLKALRAAMDKIEKNYGKGSIMKLGDES--IEDIEVIPTGSIALNAALGVGGYPKGRI 80

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+A+H IA++QK GG  AF+DAEHA D  YA KLGVD++NL ISQPD 
Sbjct: 81  VEIYGPESSGKTTIAIHAIAEAQKKGGIAAFIDAEHAFDRFYAEKLGVDVENLWISQPDN 140

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + L+RS AVDIIVIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT++
Sbjct: 141 GEQALEIAEQLIRSSAVDIIVIDSVAALTPKAEIEGDMGDSKMGLQARLMSQALRKLTAA 200

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I+++    +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR +G +KD D I GNQ
Sbjct: 201 INKTNTTCIFINQLRDKIGVMFGNPETTTGGNALKFYASVRLDIRSIGKLKDGDEIKGNQ 260

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            RVKV+KNK+A PF++ EFDIM+G+GIS  GE+IDLG + +I+ KSG+W+S+   +LGQG
Sbjct: 261 VRVKVIKNKVAPPFRKAEFDIMFGQGISRSGEIIDLGSELNIIKKSGSWYSYNDTKLGQG 320

Query: 310 RENSKIFLRENIEIAENIESLL 331
           R+ +K  + +N E+A+ +  L+
Sbjct: 321 RDAAKQCVEDNPELADELSELI 342


>gi|227495167|ref|ZP_03925483.1| recombination protein A [Actinomyces coleocanis DSM 15436]
 gi|226831619|gb|EEH64002.1| recombination protein A [Actinomyces coleocanis DSM 15436]
          Length = 370

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/347 (60%), Positives = 274/347 (78%), Gaps = 8/347 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D++K+LE ALSQI + +GKG++M+LG +      I+V+ +GSL LD+ALG+GGFP+GRI+
Sbjct: 6   DRNKSLELALSQIDKQFGKGSVMRLGDENR--PAIQVIPTGSLALDVALGVGGFPRGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA+KLGV+   LL+SQPDTG
Sbjct: 64  EVYGPESSGKTTVALHAVASAQRQGGNAAFIDAEHALDPEYAKKLGVNTDELLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSG +DIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT ++
Sbjct: 124 EQALEIADMLIRSGGIDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S +    +FINQ+R KIGV FGSPETTTGG ALKFY+SVRLD+RR+ ++K+  +  GN+T
Sbjct: 184 SATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRLDVRRIETLKEGSNPVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFKQ EFDI+YG+GIS  G +ID+GV+ +++ KSG+WF++   +LGQG+
Sbjct: 244 RVKVVKNKMAPPFKQAEFDILYGQGISREGSIIDMGVETNVIKKSGSWFTYGSDQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA-DSLLQ-----EPAINTK 351
           EN + FL++N E+A  IE  +    G+ A DS +      EPA+  K
Sbjct: 304 ENVRNFLKDNPELANEIEHKILVAMGIRAEDSEMPALPGAEPAVEEK 350


>gi|71089146|gb|AAZ23651.1| RecA [uncultured Burkholderia sp.]
          Length = 288

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 205/289 (70%), Positives = 253/289 (87%), Gaps = 1/289 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG++M+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LL+SQPDTGEQALEI D LVR
Sbjct: 60  LTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSELLVSQPDTGEQALEIADALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G R+GQG++
Sbjct: 240 FRESIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGDRIGQGKD 288


>gi|301309815|ref|ZP_07215754.1| protein RecA [Bacteroides sp. 20_3]
 gi|300831389|gb|EFK62020.1| protein RecA [Bacteroides sp. 20_3]
          Length = 350

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/322 (63%), Positives = 264/322 (81%), Gaps = 2/322 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            DK KAL AA+ +I++ YGKG+IM+LG +    E IEV+ +GS+ L+ ALG+GG+PKGRI
Sbjct: 23  ADKLKALRAAMDKIEKNYGKGSIMKLGDES--IEDIEVIPTGSIALNAALGVGGYPKGRI 80

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+A+H IA++QK GG  AF+DAEHA D  YA KLGVD++NL ISQPD 
Sbjct: 81  VEIYGPESSGKTTIAIHAIAEAQKKGGIAAFIDAEHAFDRFYAEKLGVDVENLWISQPDN 140

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + L+RS AVDIIVIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT++
Sbjct: 141 GEQALEIAEQLIRSSAVDIIVIDSVAALTPKAEIEGDMGDSKMGLQARLMSQALRKLTAA 200

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I+++    +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR +G +KD D I GNQ
Sbjct: 201 INKTNTTCIFINQLRDKIGVMFGNPETTTGGNALKFYASVRLDIRSIGKLKDGDEIKGNQ 260

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            RVKV+KNK+A PF++ EFDIM+G+GIS  GE+IDLG + +I+ KSG+W+S+   +LGQG
Sbjct: 261 VRVKVIKNKVAPPFRKAEFDIMFGQGISRSGEIIDLGSELNIIKKSGSWYSYNDTKLGQG 320

Query: 310 RENSKIFLRENIEIAENIESLL 331
           R+ +K  + +N E+A+ +  L+
Sbjct: 321 RDAAKQCVEDNPELADELSELI 342


>gi|83589927|ref|YP_429936.1| recA protein [Moorella thermoacetica ATCC 39073]
 gi|83572841|gb|ABC19393.1| RecA protein [Moorella thermoacetica ATCC 39073]
          Length = 348

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/344 (60%), Positives = 274/344 (79%), Gaps = 1/344 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           I +K +ALE ALSQI+R +GKG+IM+LG  G+    +E +S+G+L LD+ALG+GG P+GR
Sbjct: 6   INEKQRALEMALSQIERHFGKGSIMRLGETGARLN-VEAISTGALPLDLALGVGGLPRGR 64

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EI+GPESSGKTT+ALH IA++Q+ GGT AF+DAEHALD +YA  LGVD  NLL+SQPD
Sbjct: 65  VIEIFGPESSGKTTVALHVIAEAQRAGGTAAFIDAEHALDPVYAHNLGVDTDNLLVSQPD 124

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGA+D+IVIDSVAAL PRAE+EG+MG++  G+QARLMSQALRKL  
Sbjct: 125 TGEQALEIAEALVRSGAIDVIVIDSVAALVPRAELEGEMGDAHVGLQARLMSQALRKLAG 184

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            IS+S+ + +FINQ+R K+GV+FG+PETT GG ALKFY+SVRLD+R+V  +K    I GN
Sbjct: 185 IISKSRTVAIFINQLREKVGVLFGNPETTPGGRALKFYASVRLDVRKVEQLKAGTEIVGN 244

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PF+Q EFDI+YG GI   G L+D+G +  I+ KSGAW+S    RLGQ
Sbjct: 245 RTRVKVVKNKVAPPFRQAEFDIIYGRGIDREGCLLDMGTELDIIKKSGAWYSLGEDRLGQ 304

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GRE +K FLRE+ ++A  +E+ +R+ AGL+  +  +E A + +D
Sbjct: 305 GREAAKDFLREHPDLAAALETKIREKAGLINFTAGKEDATSGED 348


>gi|158318440|ref|YP_001510948.1| recombinase A [Frankia sp. EAN1pec]
 gi|158113845|gb|ABW16042.1| recA protein [Frankia sp. EAN1pec]
          Length = 345

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 209/327 (63%), Positives = 263/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE AL+QI + +GKG+IM+LG    I   I+V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 5   DREKALENALAQIDKQFGKGSIMRLGDD--IRPPIQVIPTGSIALDVALGIGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA KLGVD   LL+SQPDTG
Sbjct: 63  EIYGPESSGKTTVALHAVANAQTAGGIAAFIDAEHALDPEYAGKLGVDTDALLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 123 EQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGAL 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+S+RLD+RR+ ++KD      N+T
Sbjct: 183 ANSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASIRLDVRRIETLKDGTEAVANRT 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PF+  EFDI+YG GIS  G LID+GV+ SI+ KSGAW+++ G +LGQG+
Sbjct: 243 RVKVVKNKMAPPFRTAEFDIVYGGGISREGSLIDMGVEHSIIRKSGAWYTYDGDQLGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN++ FLR+N ++A  IE  +++  GL
Sbjct: 303 ENARSFLRDNPDLANEIEKRIKEKLGL 329


>gi|149688786|gb|ABR27804.1| RecA [Candidatus Pelagibacter ubique]
 gi|149688788|gb|ABR27805.1| RecA [Candidatus Pelagibacter ubique]
 gi|149688792|gb|ABR27807.1| RecA [Candidatus Pelagibacter ubique]
 gi|149688796|gb|ABR27809.1| RecA [Candidatus Pelagibacter ubique]
          Length = 289

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 202/291 (69%), Positives = 254/291 (87%), Gaps = 2/291 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG + ++   +E +S+GSL LD+ALGIGG PKGR++E+YGPESSGKTTLAL  +
Sbjct: 1   KGSVMKLGQRRAM--DVESISTGSLSLDVALGIGGLPKGRVIEVYGPESSGKTTLALQVL 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAF+DAEHALD IYA+KLGVD + LLISQPDTGEQALEI D LV+SG++ +
Sbjct: 59  AEAQKAGGICAFIDAEHALDPIYAKKLGVDTEELLISQPDTGEQALEIADTLVKSGSISV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAALTPRAEIEG+MG+   G+Q+RLMSQALRKLT SIS +  +++FINQ+RMKIG
Sbjct: 119 IVIDSVAALTPRAEIEGEMGDHHVGLQSRLMSQALRKLTGSISSTNTMMIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFGSPETT+GGNALKFYSSVR+DIRR+G+IK+ D I GN TRVKVVKNK+A PFK VEF
Sbjct: 179 VMFGSPETTSGGNALKFYSSVRMDIRRIGAIKNGDEIIGNSTRVKVVKNKVAPPFKVVEF 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
           D+MYG+GIS  GEL+DLG KA IV+K+GAW+++KG+++GQGREN+K +L +
Sbjct: 239 DLMYGKGISKVGELVDLGAKADIVEKAGAWYAYKGEKIGQGRENAKTYLEQ 289


>gi|50842495|ref|YP_055722.1| RecA protein [Propionibacterium acnes KPA171202]
 gi|289425313|ref|ZP_06427090.1| RecA protein [Propionibacterium acnes SK187]
 gi|289427094|ref|ZP_06428810.1| RecA protein [Propionibacterium acnes J165]
 gi|295130572|ref|YP_003581235.1| protein RecA [Propionibacterium acnes SK137]
 gi|59798221|sp|Q6A902|RECA_PROAC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|50082579|gb|AAT69987.1| RecA [Propionibacterium acnes]
 gi|50082581|gb|AAT69988.1| RecA [Propionibacterium acnes]
 gi|50082587|gb|AAT69991.1| RecA [Propionibacterium acnes]
 gi|50082589|gb|AAT69992.1| RecA [Propionibacterium acnes]
 gi|50082595|gb|AAT69995.1| RecA [Propionibacterium acnes]
 gi|50082605|gb|AAT70000.1| RecA [Propionibacterium acnes]
 gi|50082609|gb|AAT70002.1| RecA [Propionibacterium acnes]
 gi|50082611|gb|AAT70003.1| RecA [Propionibacterium acnes]
 gi|50082613|gb|AAT70004.1| RecA [Propionibacterium acnes]
 gi|50082615|gb|AAT70005.1| RecA [Propionibacterium acnes]
 gi|50082617|gb|AAT70006.1| RecA [Propionibacterium acnes]
 gi|50082619|gb|AAT70007.1| RecA [Propionibacterium acnes]
 gi|50082621|gb|AAT70008.1| RecA [Propionibacterium acnes]
 gi|50082623|gb|AAT70009.1| RecA [Propionibacterium acnes]
 gi|50082625|gb|AAT70010.1| RecA [Propionibacterium acnes]
 gi|50082627|gb|AAT70011.1| RecA [Propionibacterium acnes]
 gi|50082629|gb|AAT70012.1| RecA [Propionibacterium acnes]
 gi|50082631|gb|AAT70013.1| RecA [Propionibacterium acnes]
 gi|50082633|gb|AAT70014.1| RecA [Propionibacterium acnes]
 gi|50082641|gb|AAT70018.1| RecA [Propionibacterium acnes]
 gi|50082653|gb|AAT70024.1| RecA [Propionibacterium acnes]
 gi|50082655|gb|AAT70025.1| RecA [Propionibacterium acnes]
 gi|50082657|gb|AAT70026.1| RecA [Propionibacterium acnes]
 gi|50082659|gb|AAT70027.1| RecA [Propionibacterium acnes]
 gi|50082661|gb|AAT70028.1| RecA [Propionibacterium acnes]
 gi|50082663|gb|AAT70029.1| RecA [Propionibacterium acnes]
 gi|50840097|gb|AAT82764.1| RecA protein [Propionibacterium acnes KPA171202]
 gi|68137191|gb|AAY85536.1| RecA [Propionibacterium acnes]
 gi|68137193|gb|AAY85537.1| RecA [Propionibacterium acnes]
 gi|68137195|gb|AAY85538.1| RecA [Propionibacterium acnes]
 gi|91177065|gb|ABE26887.1| putative immunogenic protein antigen 84 [Propionibacterium acnes]
 gi|91177067|gb|ABE26888.1| putative immunogenic protein antigen 84 [Propionibacterium acnes]
 gi|91177069|gb|ABE26889.1| putative immunogenic protein antigen 84 [Propionibacterium acnes]
 gi|110348482|gb|ABG72895.1| RecA [Propionibacterium acnes]
 gi|110348484|gb|ABG72896.1| RecA [Propionibacterium acnes]
 gi|110348486|gb|ABG72897.1| RecA [Propionibacterium acnes]
 gi|110348490|gb|ABG72899.1| RecA [Propionibacterium acnes]
 gi|289154291|gb|EFD02979.1| RecA protein [Propionibacterium acnes SK187]
 gi|289159563|gb|EFD07751.1| RecA protein [Propionibacterium acnes J165]
 gi|291375310|gb|ADD99164.1| protein RecA [Propionibacterium acnes SK137]
 gi|306450655|gb|ADM88580.1| RecA [Propionibacterium acnes 266]
 gi|313764477|gb|EFS35841.1| protein RecA [Propionibacterium acnes HL013PA1]
 gi|313772141|gb|EFS38107.1| protein RecA [Propionibacterium acnes HL074PA1]
 gi|313792163|gb|EFS40264.1| protein RecA [Propionibacterium acnes HL110PA1]
 gi|313801884|gb|EFS43118.1| protein RecA [Propionibacterium acnes HL110PA2]
 gi|313807496|gb|EFS45983.1| protein RecA [Propionibacterium acnes HL087PA2]
 gi|313810005|gb|EFS47726.1| protein RecA [Propionibacterium acnes HL083PA1]
 gi|313812964|gb|EFS50678.1| protein RecA [Propionibacterium acnes HL025PA1]
 gi|313816015|gb|EFS53729.1| protein RecA [Propionibacterium acnes HL059PA1]
 gi|313818539|gb|EFS56253.1| protein RecA [Propionibacterium acnes HL046PA2]
 gi|313820306|gb|EFS58020.1| protein RecA [Propionibacterium acnes HL036PA1]
 gi|313822887|gb|EFS60601.1| protein RecA [Propionibacterium acnes HL036PA2]
 gi|313825181|gb|EFS62895.1| protein RecA [Propionibacterium acnes HL063PA1]
 gi|313827755|gb|EFS65469.1| protein RecA [Propionibacterium acnes HL063PA2]
 gi|313830333|gb|EFS68047.1| protein RecA [Propionibacterium acnes HL007PA1]
 gi|313833707|gb|EFS71421.1| protein RecA [Propionibacterium acnes HL056PA1]
 gi|313838710|gb|EFS76424.1| protein RecA [Propionibacterium acnes HL086PA1]
 gi|314915469|gb|EFS79300.1| protein RecA [Propionibacterium acnes HL005PA4]
 gi|314918247|gb|EFS82078.1| protein RecA [Propionibacterium acnes HL050PA1]
 gi|314920060|gb|EFS83891.1| protein RecA [Propionibacterium acnes HL050PA3]
 gi|314925193|gb|EFS89024.1| protein RecA [Propionibacterium acnes HL036PA3]
 gi|314932074|gb|EFS95905.1| protein RecA [Propionibacterium acnes HL067PA1]
 gi|314955945|gb|EFT00345.1| protein RecA [Propionibacterium acnes HL027PA1]
 gi|314958150|gb|EFT02253.1| protein RecA [Propionibacterium acnes HL002PA1]
 gi|314960024|gb|EFT04126.1| protein RecA [Propionibacterium acnes HL002PA2]
 gi|314962822|gb|EFT06922.1| protein RecA [Propionibacterium acnes HL082PA1]
 gi|314967811|gb|EFT11910.1| protein RecA [Propionibacterium acnes HL037PA1]
 gi|314973338|gb|EFT17434.1| protein RecA [Propionibacterium acnes HL053PA1]
 gi|314976015|gb|EFT20110.1| protein RecA [Propionibacterium acnes HL045PA1]
 gi|314978446|gb|EFT22540.1| protein RecA [Propionibacterium acnes HL072PA2]
 gi|314983963|gb|EFT28055.1| protein RecA [Propionibacterium acnes HL005PA1]
 gi|314988147|gb|EFT32238.1| protein RecA [Propionibacterium acnes HL005PA2]
 gi|314989951|gb|EFT34042.1| protein RecA [Propionibacterium acnes HL005PA3]
 gi|315078038|gb|EFT50089.1| protein RecA [Propionibacterium acnes HL053PA2]
 gi|315080663|gb|EFT52639.1| protein RecA [Propionibacterium acnes HL078PA1]
 gi|315084335|gb|EFT56311.1| protein RecA [Propionibacterium acnes HL027PA2]
 gi|315085677|gb|EFT57653.1| protein RecA [Propionibacterium acnes HL002PA3]
 gi|315088901|gb|EFT60877.1| protein RecA [Propionibacterium acnes HL072PA1]
 gi|315096253|gb|EFT68229.1| protein RecA [Propionibacterium acnes HL038PA1]
 gi|315098514|gb|EFT70490.1| protein RecA [Propionibacterium acnes HL059PA2]
 gi|315101128|gb|EFT73104.1| protein RecA [Propionibacterium acnes HL046PA1]
 gi|315105404|gb|EFT77380.1| protein RecA [Propionibacterium acnes HL030PA1]
 gi|315108349|gb|EFT80325.1| protein RecA [Propionibacterium acnes HL030PA2]
 gi|327326165|gb|EGE67955.1| protein RecA [Propionibacterium acnes HL096PA2]
 gi|327331960|gb|EGE73697.1| protein RecA [Propionibacterium acnes HL096PA3]
 gi|327443161|gb|EGE89815.1| protein RecA [Propionibacterium acnes HL013PA2]
 gi|327445947|gb|EGE92601.1| protein RecA [Propionibacterium acnes HL043PA2]
 gi|327448074|gb|EGE94728.1| protein RecA [Propionibacterium acnes HL043PA1]
 gi|327450804|gb|EGE97458.1| protein RecA [Propionibacterium acnes HL087PA3]
 gi|327453119|gb|EGE99773.1| protein RecA [Propionibacterium acnes HL092PA1]
 gi|327453851|gb|EGF00506.1| protein RecA [Propionibacterium acnes HL083PA2]
 gi|328753492|gb|EGF67108.1| protein RecA [Propionibacterium acnes HL020PA1]
 gi|328754223|gb|EGF67839.1| protein RecA [Propionibacterium acnes HL087PA1]
 gi|328754526|gb|EGF68142.1| protein RecA [Propionibacterium acnes HL025PA2]
 gi|328760613|gb|EGF74180.1| protein RecA [Propionibacterium acnes HL099PA1]
          Length = 348

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/327 (63%), Positives = 262/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL  AL QI++ +GKG+IM+LG Q ++   I  + +GS+ LD+ALG+GG P+GRIV
Sbjct: 6   DREKALATALQQIEKQHGKGSIMRLGEQETV--KIAAIPTGSVALDVALGVGGLPRGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA +Q  GG CAF+DAEHALD  YARKLGVD  +LL+SQPD G
Sbjct: 64  EIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPEYARKLGVDTDSLLVSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGA+++IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADTLVRSGALELIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + +    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RRV ++KD   + GN+T
Sbjct: 184 NAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRVETLKDGSEMVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV KNK+A PFKQ EFDI+YG+GIS  G LID+GV   I+ KSG+WFS+  ++LGQG+
Sbjct: 244 RVKVAKNKVAPPFKQAEFDILYGQGISREGSLIDMGVDCGIITKSGSWFSYNNEQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN + FLR N ++A  IE  +  + GL
Sbjct: 304 ENVRKFLRGNPDVANEIEDKILTHLGL 330


>gi|326791550|ref|YP_004309371.1| recA protein [Clostridium lentocellum DSM 5427]
 gi|326542314|gb|ADZ84173.1| recA protein [Clostridium lentocellum DSM 5427]
          Length = 353

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 212/345 (61%), Positives = 270/345 (78%), Gaps = 5/345 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +  KAL+AA+SQIQ+ +GKG+IM+LG        +    +GSL LDIALG+GG PKGRIV
Sbjct: 4   ESKKALDAAISQIQKQFGKGSIMKLGEATDT--NVHTFPTGSLSLDIALGVGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ LH IA+ QK GG  AF+DAEHALD  YA KLGV++  L ISQPD G
Sbjct: 62  EVYGPESSGKTTVTLHMIAEVQKQGGIAAFIDAEHALDPSYAAKLGVNIDELYISQPDNG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + +VRSGA+DIIV+DSVAAL PRAEIEGDMG+S  G+QARLMSQALRKLT  I
Sbjct: 122 EQALEIAETMVRSGAIDIIVVDSVAALVPRAEIEGDMGDSHMGLQARLMSQALRKLTGVI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SKC ++FINQ+R K+GVMFGS ETTTGG ALKFY+S+RLD+R++ ++K  +   G++T
Sbjct: 182 NKSKCTVIFINQLREKVGVMFGSNETTTGGRALKFYASIRLDVRKIETLKQSNEFIGSRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EFDIMYGEGIS  G+++DL     IV+KSGAW+S+   RLGQGR
Sbjct: 242 RVKVVKNKVAPPFQQAEFDIMYGEGISKEGDVLDLATNIDIVNKSGAWYSYGDLRLGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           EN+KI+++E+ E+   IE+ +R + G+   S L E A  TKD+ +
Sbjct: 302 ENAKIYIKEHPELLLEIENKVRSHYGI---SALDETAHETKDEMN 343


>gi|254242315|ref|ZP_04935637.1| RecA protein [Pseudomonas aeruginosa 2192]
 gi|126195693|gb|EAZ59756.1| RecA protein [Pseudomonas aeruginosa 2192]
          Length = 346

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 205/322 (63%), Positives = 264/322 (81%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKRALAAALGQIERQFGKGAVMRMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QKTG TC  VD E  LD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAEAQKTGATCCSVDVEPPLDPDYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF+Q EF I+YG+GI   GE+IDLGV+  +V+KSGAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKVSPPFRQAEFQILYGKGIYRTGEIIDLGVQLGLVEKSGAWYSYQGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLR 332
            N+  +L +N EI   +E  +R
Sbjct: 302 ANAAKYLEDNPEIGSVLEKTIR 323


>gi|308237909|emb|CBK52101.1| RecA protein [Acidithiobacillus ferrooxidans]
          Length = 279

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 203/276 (73%), Positives = 243/276 (88%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           LGLD+ALG+GG P+GR+VEIYGPESSGKTTL LH IA  Q  GGT AF+DAEHALD  YA
Sbjct: 1   LGLDLALGVGGLPRGRVVEIYGPESSGKTTLTLHAIASCQAAGGTAAFIDAEHALDPGYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            KLGVDL+NLLISQPDTGEQALEI DMLVRSGAVD+IVIDSVAALTP+AEIEGDMG+S  
Sbjct: 61  HKLGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGDMGDSHV 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QARLMSQALRKLT++ISR+  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLD
Sbjct: 121 GLQARLMSQALRKLTANISRTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLD 180

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           IRR+G+IK  D + GN TRVKVVKNK+A PF++ EF I YGEGIS   EL+DLGVK  IV
Sbjct: 181 IRRIGAIKKSDEVVGNDTRVKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVKFDIV 240

Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           +KSGAW+S++G+R+GQG++N++ +L+E+ E+A NIE
Sbjct: 241 EKSGAWYSYQGERIGQGKDNARQYLKEHPELAANIE 276


>gi|47571256|gb|AAT35785.1| RecA [Mycobacterium avium subsp. avium ATCC 25291]
 gi|47571258|gb|AAT35786.1| RecA [Mycobacterium avium]
          Length = 321

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 202/318 (63%), Positives = 263/318 (82%), Gaps = 2/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 3   DREKALELAMAQIEKSYGKGSVMRLGDE--MRQPISVIPTGSIALDVALGIGGLPRGRVV 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 61  EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 121 EQALEIADMLIRSGALDILVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+T
Sbjct: 181 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNRT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK++ PFKQ EFDI+YG GIS  G LID+GV    + KSG+WF+++G++LGQG+
Sbjct: 241 RVKIVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGSWFTYEGEQLGQGK 300

Query: 311 ENSKIFLRENIEIAENIE 328
           EN++ FL EN E+A  IE
Sbjct: 301 ENARTFLMENDEVANEIE 318


>gi|197259608|gb|ACH56445.1| RecA type I [Propionibacterium acnes]
          Length = 336

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/327 (63%), Positives = 262/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL  AL QI++ +GKG+IM+LG Q ++   I  + +GS+ LD+ALG+GG P+GRIV
Sbjct: 6   DREKALATALQQIEKQHGKGSIMRLGEQETV--KIAAIPTGSVALDVALGVGGLPRGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA +Q  GG CAF+DAEHALD  YARKLGVD  +LL+SQPD G
Sbjct: 64  EIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPEYARKLGVDTDSLLVSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGA+++IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADTLVRSGALELIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + +    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RRV ++KD   + GN+T
Sbjct: 184 NAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRVETLKDGSEMVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV KNK+A PFKQ EFDI+YG+GIS  G LID+GV   I+ KSG+WFS+  ++LGQG+
Sbjct: 244 RVKVAKNKVAPPFKQAEFDILYGQGISREGSLIDMGVDCGIITKSGSWFSYNNEQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN + FLR N ++A  IE  +  + GL
Sbjct: 304 ENVRKFLRGNPDVANEIEDKILTHLGL 330


>gi|47571260|gb|AAT35787.1| RecA [Mycobacterium scrofulaceum]
          Length = 319

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 202/318 (63%), Positives = 263/318 (82%), Gaps = 2/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 3   DREKALELAMAQIEKSYGKGSVMRLGDE--MRQPISVIPTGSIALDVALGIGGLPRGRVV 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 61  EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSV AL PRAE+EG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 121 EQALEIADMLIRSGALDILVIDSVTALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+T
Sbjct: 181 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNRT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG GIS  G LID+GV+   + KSG+WF+++G++LGQG+
Sbjct: 241 RVKVVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGK 300

Query: 311 ENSKIFLRENIEIAENIE 328
           EN++ FL EN E+A  IE
Sbjct: 301 ENARTFLMENDEVANEIE 318


>gi|307690446|ref|ZP_07632892.1| recombinase A [Clostridium cellulovorans 743B]
          Length = 350

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 209/349 (59%), Positives = 279/349 (79%), Gaps = 4/349 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA++AA++QI++ +GKGAIM LG + SI + ++ + +G L LD+ALGIGG P+GRIV
Sbjct: 4   DKLKAIQAAMTQIEKQFGKGAIMTLG-ENSILD-VDSIPTGCLALDVALGIGGVPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A++QK GG  AF+D EHALD  YAR++GV+ ++L++SQPDTG
Sbjct: 62  EIYGPESSGKTTVALHVVAEAQKQGGAAAFIDVEHALDPAYARRVGVNTEDLIVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ LVRSGAVD++++DSVAAL P+AEIEG+MG++  G+QARLMSQALRKL  SI
Sbjct: 122 EQALEITEALVRSGAVDVVIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLAGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SKC+++FINQ+R K+G+MFG+PETT GG ALKFY+SVRLDIR+  SIK  + + GN+T
Sbjct: 182 NKSKCVVIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDIRKTDSIKQGEDVLGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KV+KNK+A PFK  EFDIMY EGIS  G ++D+GVK  IV KSGAWFS+   RLGQGR
Sbjct: 242 KIKVIKNKVAPPFKLAEFDIMYNEGISKSGNILDVGVKEEIVQKSGAWFSYGDIRLGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ--NAGLVADSLLQEPAINTKDDADKD 357
           EN+K F  EN E+A  +E+ +R+  N  L+  S + +      D+ D+D
Sbjct: 302 ENAKQFFVENPELALEVENKIREKYNMPLIGLSDISKATEIVTDELDED 350


>gi|65306699|gb|AAY41902.1| RecA [Mycobacterium aubagnense]
          Length = 350

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/343 (60%), Positives = 269/343 (78%), Gaps = 9/343 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE AL+QI + +GKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 7   DREKALELALAQIDKSFGKGSVMRLGEETR--QPISVIPTGSIALDVALGIGGLPRGRVV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD   LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLVRSGAIDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+T
Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFKQ EFDI+YG GIS  G LID+GV+   + KSG+WF++ G++LGQG+
Sbjct: 245 RVKIVKNKVAPPFKQAEFDILYGRGISREGSLIDMGVEHGFIRKSGSWFTYDGEQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL-------VADSLLQEP 346
           EN++ FL +N++ A  IE  +++  G+        AD +L  P
Sbjct: 305 ENARNFLLQNLDAANEIEKKIKEKLGIGAVLTDGAADDVLPAP 347


>gi|124514183|gb|EAY55698.1| RecA protein [Leptospirillum rubarum]
          Length = 360

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/321 (64%), Positives = 267/321 (83%), Gaps = 1/321 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + K+L+ A+SQI++ +GKG+IM+LG +  + + + V+ SGSL LDIALGIGG+P+GR+VE
Sbjct: 9   RQKSLDLAVSQIEKQFGKGSIMRLG-KDQVPQNVPVIPSGSLALDIALGIGGYPRGRVVE 67

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTLALH I++  K GG  AF+DAEHALD  YA++LGV  ++LLI+QPDTGE
Sbjct: 68  LYGPESSGKTTLALHAISEVHKAGGVAAFIDAEHALDVTYAKRLGVRTEDLLIAQPDTGE 127

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEIT+ LVRSG++D+IV+DSVAAL PRAE+EG+MG++  G+QARLMSQALRKLTS+IS
Sbjct: 128 QALEITETLVRSGSIDLIVVDSVAALVPRAELEGEMGDAHVGLQARLMSQALRKLTSAIS 187

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S   ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIRR+ SIK+ D + GN+ R
Sbjct: 188 KSNTTVLFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRRIESIKEGDQVLGNRIR 247

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNKMA PF+Q EFDI + EGIS  GELIDLGV   I++KSGAW+S   +RLGQG+E
Sbjct: 248 VKVVKNKMAPPFRQAEFDISFNEGISTVGELIDLGVDHGILEKSGAWYSIGNERLGQGKE 307

Query: 312 NSKIFLRENIEIAENIESLLR 332
             K++L+ + E  + IE  +R
Sbjct: 308 AVKLYLKTHPEAFKKIEQEIR 328


>gi|94676568|ref|YP_588661.1| recA protein [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|123081498|sp|Q1LTQ3|RECA_BAUCH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|94219718|gb|ABF13877.1| recA protein [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 350

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 204/323 (63%), Positives = 266/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AALS I++ +G G+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALSLIEKQFGTGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +QK G  CAF+DAEHALD IYA+ LGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIATAQKEGKICAFIDAEHALDPIYAKNLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D+L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKLTS++
Sbjct: 124 EQALEICDVLTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHIGLAARMMSQAMRKLTSNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GS+K+ D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSVKEGDVVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ +F I YG+GI+  GEL+DLGVK ++++K+G+W+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQADFQITYGKGINIHGELVDLGVKNNLIEKAGSWYSYNGNKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N   FL+ + ++A  ++  LR+
Sbjct: 304 NNVCNFLKYHPQLAAELDKKLRE 326


>gi|4566892|gb|AAD23507.1|AF117878_1 RecA protein [Vibrio cholerae]
 gi|4566893|gb|AAD23508.1|AF117879_1 RecA protein [Vibrio cholerae]
 gi|4566894|gb|AAD23509.1|AF117880_1 RecA protein [Vibrio cholerae]
 gi|4566896|gb|AAD23511.1|AF117882_1 RecA protein [Vibrio cholerae]
 gi|4566897|gb|AAD23512.1|AF117883_1 RecA protein [Vibrio cholerae]
          Length = 346

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 203/318 (63%), Positives = 264/318 (83%), Gaps = 2/318 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GP
Sbjct: 1   LAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 ICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+ N+  
Sbjct: 239 KNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACK 298

Query: 316 FLRENIEIAENIESLLRQ 333
           +L+EN EIA+ ++  LR+
Sbjct: 299 YLKENPEIAKTLDKKLRE 316


>gi|323356753|ref|YP_004223149.1| RecA/RadA recombinase [Microbacterium testaceum StLB037]
 gi|323273124|dbj|BAJ73269.1| RecA/RadA recombinase [Microbacterium testaceum StLB037]
          Length = 350

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/327 (63%), Positives = 263/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KALE+AL+QI R +GKG++M+LGS       IE + +GS+ LD+ALGIGG P+GRI+
Sbjct: 6   EREKALESALAQIDRQFGKGSVMRLGSDDR--APIETIPTGSVALDVALGIGGLPRGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLHAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+D++VIDSVAAL P AEI+G+MG+S  G+QARLMSQALRKLT  +
Sbjct: 124 EQALEIADMLIRSGAIDLVVIDSVAALVPEAEIKGEMGDSHVGLQARLMSQALRKLTGGL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + +K   +FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+T
Sbjct: 184 NTTKTTAIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFKQ EFDI+YG GIS  G LID GV+  IV KSGAW++++G++LGQG+
Sbjct: 244 RVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDFGVEHGIVKKSGAWYTYEGEQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN++ FL +N ++A  IES ++   G+
Sbjct: 304 ENARNFLIKNADVAAEIESKIKNKLGI 330


>gi|291614563|ref|YP_003524720.1| recA protein [Sideroxydans lithotrophicus ES-1]
 gi|291584675|gb|ADE12333.1| recA protein [Sideroxydans lithotrophicus ES-1]
          Length = 341

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 217/329 (65%), Positives = 280/329 (85%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AALSQI++ +GKG+IM+LG +  + + I+VVS+GSLGLDIALG+GG P+GR++
Sbjct: 4   NKSKALAAALSQIEKQFGKGSIMRLG-ESEVGKDIQVVSTGSLGLDIALGVGGLPRGRVI 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA+KLGV +++LLISQPD G
Sbjct: 63  EIYGPESSGKTTLTLQVIAEMQKMGGTAAFIDAEHALDPGYAKKLGVKVEDLLISQPDNG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VD++V+DSVAALTP+AEIEG+MG++  G+ ARLMSQALRKLT++I
Sbjct: 123 EQALEIVDMLVRSGSVDVVVVDSVAALTPKAEIEGEMGDAQMGLHARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +RS  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIRR G+IK  D + GN+T
Sbjct: 183 NRSNTMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRRTGAIKKGDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK+  FDI+YGEGIS  GE+I+LGV   IV+KSGAW+++ G+++GQG+
Sbjct: 243 RVKVVKNKVAPPFKEANFDILYGEGISREGEIIELGVLHKIVEKSGAWYAYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FL+ N  IA  IE+ +R   G+ A
Sbjct: 303 DNAREFLKSNPVIAAEIENRVRAAVGVAA 331


>gi|71089094|gb|AAZ23625.1| RecA [uncultured Burkholderia sp.]
          Length = 288

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 203/289 (70%), Positives = 254/289 (87%), Gaps = 1/289 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG++M+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+VE YGPESSGKTT
Sbjct: 1   IEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVETYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +A+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LVR
Sbjct: 60  LTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQG++
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQGKD 288


>gi|71089098|gb|AAZ23627.1| RecA [uncultured Burkholderia sp.]
          Length = 288

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 203/289 (70%), Positives = 255/289 (88%), Gaps = 1/289 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG++M+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +A+ QK GGT AF+DAEHALD  YA +LGV++ +LL+SQPDTGEQALEI D LVR
Sbjct: 60  LTLQVVAEMQKLGGTAAFIDAEHALDIQYAGELGVNVSDLLVSQPDTGEQALEIADALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQG++
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQGKD 288


>gi|116328242|ref|YP_797962.1| recombinase A [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116330966|ref|YP_800684.1| recombinase A [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116120986|gb|ABJ79029.1| RecA recombinase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116124655|gb|ABJ75926.1| RecA recombinase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 367

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 212/331 (64%), Positives = 271/331 (81%), Gaps = 3/331 (0%)

Query: 4   RKEMNIVDKSK--ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           ++E   VD SK  A+E A++QI++ +GKG+IM+LGS  S  + ++V+ SGSL LDIALGI
Sbjct: 10  KEEAQNVDDSKKLAIEQAMNQIEKQFGKGSIMKLGSDTS-KQTVQVIPSGSLDLDIALGI 68

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+P GRIVEIYGPESSGKTTL L  IA++QK GG  AF+DAEHALD  YA+KLGV++  
Sbjct: 69  GGYPIGRIVEIYGPESSGKTTLTLSAIAEAQKRGGVAAFIDAEHALDPSYAKKLGVNIDE 128

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPD GE+ALEI + LVRS A+D+IVIDSVAAL P+AEIEGDMG+S  G+QARLMSQ
Sbjct: 129 LLVSQPDNGEEALEICESLVRSNAIDLIVIDSVAALVPKAEIEGDMGDSHMGLQARLMSQ 188

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT +I++SK ++VFINQ+RMKIGVMFGSPETTTGGNALKFY S+RLDIR++ +IK+
Sbjct: 189 ALRKLTGTIAKSKTVVVFINQIRMKIGVMFGSPETTTGGNALKFYCSIRLDIRKIETIKE 248

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
           K+   GN+ RVKVVKNK A PFKQ EFDI++  GIS  G L+DLGVK  I+ K+GAW+S+
Sbjct: 249 KEESVGNRVRVKVVKNKCAPPFKQAEFDIIFNAGISREGSLVDLGVKHDIIHKAGAWYSY 308

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLR 332
             +++GQG+E +K +L+ N EIA  IE+++R
Sbjct: 309 NTEKIGQGKEAAKEYLKNNPEIALTIENMIR 339


>gi|302874936|ref|YP_003843569.1| recA protein [Clostridium cellulovorans 743B]
 gi|302577793|gb|ADL51805.1| recA protein [Clostridium cellulovorans 743B]
          Length = 357

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 209/349 (59%), Positives = 279/349 (79%), Gaps = 4/349 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA++AA++QI++ +GKGAIM LG + SI + ++ + +G L LD+ALGIGG P+GRIV
Sbjct: 11  DKLKAIQAAMTQIEKQFGKGAIMTLG-ENSILD-VDSIPTGCLALDVALGIGGVPRGRIV 68

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A++QK GG  AF+D EHALD  YAR++GV+ ++L++SQPDTG
Sbjct: 69  EIYGPESSGKTTVALHVVAEAQKQGGAAAFIDVEHALDPAYARRVGVNTEDLIVSQPDTG 128

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ LVRSGAVD++++DSVAAL P+AEIEG+MG++  G+QARLMSQALRKL  SI
Sbjct: 129 EQALEITEALVRSGAVDVVIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLAGSI 188

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SKC+++FINQ+R K+G+MFG+PETT GG ALKFY+SVRLDIR+  SIK  + + GN+T
Sbjct: 189 NKSKCVVIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDIRKTDSIKQGEDVLGNRT 248

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KV+KNK+A PFK  EFDIMY EGIS  G ++D+GVK  IV KSGAWFS+   RLGQGR
Sbjct: 249 KIKVIKNKVAPPFKLAEFDIMYNEGISKSGNILDVGVKEEIVQKSGAWFSYGDIRLGQGR 308

Query: 311 ENSKIFLRENIEIAENIESLLRQ--NAGLVADSLLQEPAINTKDDADKD 357
           EN+K F  EN E+A  +E+ +R+  N  L+  S + +      D+ D+D
Sbjct: 309 ENAKQFFVENPELALEVENKIREKYNMPLIGLSDISKATEIVTDELDED 357


>gi|153855273|ref|ZP_01996439.1| hypothetical protein DORLON_02453 [Dorea longicatena DSM 13814]
 gi|149752272|gb|EDM62203.1| hypothetical protein DORLON_02453 [Dorea longicatena DSM 13814]
          Length = 353

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 201/335 (60%), Positives = 271/335 (80%), Gaps = 1/335 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK +AL+AA++++++ +GKG +M+LG   +    +E + +GSL LD+ALG+GG PKGRIV
Sbjct: 5   DKKRALDAAIAKLEKDFGKGTVMRLGDPSAQV-AVETIPTGSLSLDLALGLGGVPKGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ QK GG   F+DAEHALD +YA+ +GVD+  L ISQPD+G
Sbjct: 64  EIYGPESSGKTTVALHMIAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDELYISQPDSG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           +QALEIT+ +VRSGA+DIIV+DSVAAL P+ EIEGDMG+S  G+QARLMSQALRKLT  I
Sbjct: 124 DQALEITETMVRSGAMDIIVVDSVAALVPKQEIEGDMGDSHVGLQARLMSQALRKLTPVI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S C+++FINQ+R K+GVMFG+PETTTGG ALKFYSSVR+D+RR+ ++K    + GN+T
Sbjct: 184 SKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRMDVRRIETLKQSGEMVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFK+ EFDIM+G+GIS  G+++DL VK  +V KSGAWF++ G ++GQGR
Sbjct: 244 RVKIVKNKIAPPFKEAEFDIMFGKGISKEGDILDLAVKCDLVSKSGAWFAYNGDKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           EN+K +L E+ EI E +E  +R +  + A+  ++E
Sbjct: 304 ENAKTYLSEHPEIMEELEQKIRAHYHIGAEGDVEE 338


>gi|149688800|gb|ABR27811.1| RecA [Candidatus Pelagibacter ubique]
          Length = 289

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 202/291 (69%), Positives = 254/291 (87%), Gaps = 2/291 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG + ++   +E +S+GSL LD+ALGIGG PKGR++E+YGPESSGKTTLAL  +
Sbjct: 1   KGSVMKLGQRRAM--DVESISTGSLSLDVALGIGGLPKGRVIEVYGPESSGKTTLALQVL 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAF+DAEHALD IYA+KLGVD + LLISQPDTGEQALEI D LV+SG++ +
Sbjct: 59  AEAQKAGGICAFIDAEHALDPIYAKKLGVDTEELLISQPDTGEQALEIADTLVKSGSISV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAALTPRAEIEG+MG+   G+Q+RLMSQALRKLT SIS +  +++FINQ+RMKIG
Sbjct: 119 IVIDSVAALTPRAEIEGEMGDHHVGLQSRLMSQALRKLTGSISSTNTMMIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFGSPETT+GGNALKFYSSVR+DIRR+G+IK+ D I GN TRVKVVKNK+A PFK VEF
Sbjct: 179 VMFGSPETTSGGNALKFYSSVRMDIRRIGAIKNGDEIIGNSTRVKVVKNKVAPPFKVVEF 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
           D+MYG+GIS  GEL+DLG KA IV+K+GAW+++KG+++GQGREN+K +L +
Sbjct: 239 DLMYGKGISKVGELVDLGSKADIVEKAGAWYAYKGEKIGQGRENAKTYLEQ 289


>gi|4566895|gb|AAD23510.1|AF117881_1 RecA protein [Vibrio cholerae]
          Length = 346

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 203/318 (63%), Positives = 264/318 (83%), Gaps = 2/318 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GP
Sbjct: 1   LAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 ICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+ N+  
Sbjct: 239 KNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACK 298

Query: 316 FLRENIEIAENIESLLRQ 333
           +L+EN EIA+ ++  LR+
Sbjct: 299 YLKENPEIAKTLDKKLRE 316


>gi|296117706|ref|ZP_06836290.1| protein RecA [Corynebacterium ammoniagenes DSM 20306]
 gi|295969437|gb|EFG82678.1| protein RecA [Corynebacterium ammoniagenes DSM 20306]
          Length = 380

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/327 (63%), Positives = 265/327 (81%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+AA+S I++ +GKGA+M+LG +      I+ +SSG+  +DIALGIGGFP+GR+V
Sbjct: 15  DRKKALDAAMSMIEKDFGKGAVMRLGEENR--PPIQAISSGNTAIDIALGIGGFPRGRVV 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA++QKTGG  AF+DAEHALD  YAR LGVD  NLL+SQPDTG
Sbjct: 73  EVYGPESSGKTTVALHAIAEAQKTGGIAAFIDAEHALDPEYARLLGVDTDNLLVSQPDTG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DIIVIDSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 133 EQALEIADMLVRSGAIDIIVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR DIRR+ ++KD     GN+T
Sbjct: 193 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRIQTLKDGQDAIGNRT 252

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+K+VKNK++ PFK  EFDIMYGEGIS    +IDLGV+   + KSG+WF+++G +LGQG+
Sbjct: 253 RIKIVKNKVSPPFKIAEFDIMYGEGISRESSIIDLGVEHGFIKKSGSWFTYEGDQLGQGK 312

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           E ++ FL+ + E+A+ IE  + Q  G+
Sbjct: 313 EKARNFLKNSPELADEIEKKIFQKLGV 339


>gi|312195020|ref|YP_004015081.1| recA protein [Frankia sp. EuI1c]
 gi|311226356|gb|ADP79211.1| recA protein [Frankia sp. EuI1c]
          Length = 345

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/328 (62%), Positives = 266/328 (81%), Gaps = 2/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+ AL+QI + +GKG++M+LG +      I+ + +GS+ LD+ALGIGG P+GRI+
Sbjct: 5   DRDKALDNALAQIDKQFGKGSVMRLGDE--TRAPIQAIPTGSIALDVALGIGGLPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA KLGVD  NLL+SQPDTG
Sbjct: 63  EIYGPESSGKTTVALHAVASAQAAGGIAAFIDAEHALDPDYAGKLGVDTDNLLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D+LVRSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 123 EQALEIADLLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+T
Sbjct: 183 SNSNTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGADAVGNRT 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+  EFDI+YG GIS  G LID+GV+ +I+ KSGAW+++ G +LGQG+
Sbjct: 243 RVKVVKNKVAPPFRTAEFDIVYGGGISREGSLIDMGVEHAIIRKSGAWYTYDGDQLGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338
           EN++ FLR+N ++A+ IE  +++  G++
Sbjct: 303 ENARNFLRDNPDLADEIEKRIKEKLGII 330


>gi|118618697|ref|YP_907029.1| recombinase A [Mycobacterium ulcerans Agy99]
 gi|166220657|sp|A0PT89|RECA_MYCUA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|118570807|gb|ABL05558.1| recombinase A RecA [Mycobacterium ulcerans Agy99]
          Length = 346

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 205/340 (60%), Positives = 272/340 (80%), Gaps = 6/340 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI++ YGKG++M+LG +  + + I ++ +GS+ LD+ALGIGG P+GR++
Sbjct: 6   DREKALELAMAQIEKSYGKGSVMRLGDE--VRQPISIIPTGSIALDVALGIGGLPRGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIVDMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+T
Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK++ PFKQ EFDI+YG GIS  G LID+GV    + KSGAWF+++G++LGQG+
Sbjct: 244 RVKIVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGAWFTYEGEQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA----DSLLQEP 346
           EN++ FL EN  +A  IE  +++  G+ A    D +L  P
Sbjct: 304 ENARNFLLENGGVANEIEKKIKEKLGIGAVVTDDGVLPAP 343


>gi|332169801|gb|AEE19056.1| recA protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 335

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 203/323 (62%), Positives = 262/323 (81%), Gaps = 3/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+  L ++ + YGKGA+M++G Q  +   +E + +GSLGLD+ALG+GG+P+GR++E
Sbjct: 8   KLKALKLTLDKLDKTYGKGAVMKMGDQAIV--DVESIPTGSLGLDVALGVGGYPRGRVIE 65

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IAQ+QK GG  AF+DAEHA D  YA KLGVD+ NL+ISQPD GE
Sbjct: 66  IYGPESSGKTTLTLHAIAQAQKAGGIAAFIDAEHAFDRFYAEKLGVDIDNLIISQPDNGE 125

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RSGA+DI+V+DSVAALTP++EIEG+MG+S  G+ ARLMSQALRKLT SIS
Sbjct: 126 QALEIADNLIRSGAIDIVVVDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTGSIS 185

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-ITGNQT 250
           ++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IKD ++ + GN+T
Sbjct: 186 KTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKDSNANVMGNKT 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+  EFDIMYGEGIS  GE+ID+GV   IV K+G+WFS++  +LGQGR
Sbjct: 246 RVKVVKNKVAPPFRMAEFDIMYGEGISKVGEIIDIGVNYEIVKKAGSWFSYQDTKLGQGR 305

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           +  K  L +N ++ + +E+ + +
Sbjct: 306 DAVKALLLDNPDLMDELETKIHE 328


>gi|325290320|ref|YP_004266501.1| RecA protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324965721|gb|ADY56500.1| RecA protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 348

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/328 (62%), Positives = 268/328 (81%), Gaps = 1/328 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+  DK KAL+ AL QI++ +GKGA+M+LG + S    IEV+S+G+L LD+ALG GG P+
Sbjct: 1   MSGTDKLKALDIALGQIEKQFGKGAVMRLG-EASTKMAIEVISTGALALDVALGAGGVPR 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTT+ALH IA++QK GG  AF+DAEHALD  YA+ LGV+   LLISQ
Sbjct: 60  GRVVEIYGPESSGKTTVALHVIAEAQKAGGVAAFIDAEHALDPEYAKALGVNTDELLISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI + LVRSGA+D++VIDSVAAL PRAEIEG+MG+S  G+ ARLMSQALRKL
Sbjct: 120 PDTGEQALEICEALVRSGAIDVVVIDSVAALVPRAEIEGEMGDSHVGLHARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T +IS+S+  +VFINQ+R K+G+MFG+PETTTGG ALKFY+SVRL++++   IK    + 
Sbjct: 180 TGAISKSRTCVVFINQIREKVGIMFGNPETTTGGRALKFYASVRLEVKKQDVIKQGQDVI 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PF   +FDI+YGEGIS  G L+DLG + +IV KSGAW+S++G+RL
Sbjct: 240 GNRTRVKVVKNKIAPPFNHADFDIIYGEGISREGSLVDLGAETTIVTKSGAWYSYQGERL 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQN 334
           GQGRE++K +LR++ E+ + IE+ +R+ 
Sbjct: 300 GQGRESAKEYLRDHPEVRQEIEAKIREK 327


>gi|31540555|gb|AAP49240.1| RecA [Mycobacterium peregrinum]
          Length = 325

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 203/318 (63%), Positives = 263/318 (82%), Gaps = 2/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 7   DREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRVV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+T
Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG GIS  G LID+GV+   + KSG+WF+++G++LGQG+
Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGHGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIE 328
           EN++ F+ EN+++A  IE
Sbjct: 305 ENARKFMLENVDVANEIE 322


>gi|62260694|gb|AAX77925.1| unknown protein [synthetic construct]
          Length = 394

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/337 (66%), Positives = 277/337 (82%), Gaps = 5/337 (1%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           D  K M  + K KALE+ALSQI++ +GKGAIM+LG Q +  + I+V+ SG + LD+ALGI
Sbjct: 19  DDDKHMLEMSKEKALESALSQIEKQFGKGAIMRLGDQEAAHD-IDVIPSGIIALDVALGI 77

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+PKGRI+EIYG ESSGKTTL L  IAQ QK GGT AFVDAEHALD  YA+ LGVD+ N
Sbjct: 78  GGYPKGRIIEIYGHESSGKTTLTLLAIAQCQKQGGTAAFVDAEHALDPKYAKLLGVDVDN 137

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L++SQPDTGEQALEI DMLVRSG VDI+VIDSVAALTP+AEIEGDMG+S  G+QARLMSQ
Sbjct: 138 LIVSQPDTGEQALEIADMLVRSGGVDIVVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQ 197

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT++I RS  +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRL++++ GSIKD
Sbjct: 198 ALRKLTANIKRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLEVKKGGSIKD 257

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
              ++GN+ +VKVVKNK+A PFKQ +F+++YGEGIS   ELIDLG K +I++KSGAW+S+
Sbjct: 258 GIDVSGNEIKVKVVKNKVAPPFKQADFELIYGEGISLEAELIDLGAKYNIIEKSGAWYSY 317

Query: 302 KGQRLGQGRENSKIFLRENI----EIAENIESLLRQN 334
           KG+++GQG+E SK +L+EN     EI   I  LL  N
Sbjct: 318 KGKKIGQGKEKSKEYLKENTAERDEIERAILELLLPN 354


>gi|52080299|ref|YP_079090.1| recombinase A [Bacillus licheniformis ATCC 14580]
 gi|52785676|ref|YP_091505.1| recombinase A [Bacillus licheniformis ATCC 14580]
 gi|319645920|ref|ZP_08000150.1| RecA protein [Bacillus sp. BT1B_CT2]
 gi|60392990|sp|P62211|RECA_BACLI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|76363320|sp|Q65JF2|RECA_BACLD RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|46019685|emb|CAD54116.1| RecA protein [Bacillus licheniformis]
 gi|52003510|gb|AAU23452.1| multifunctional SOS repair regulator [Bacillus licheniformis ATCC
           14580]
 gi|52348178|gb|AAU40812.1| RecA [Bacillus licheniformis ATCC 14580]
 gi|317391670|gb|EFV72467.1| RecA protein [Bacillus sp. BT1B_CT2]
          Length = 348

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/327 (63%), Positives = 265/327 (81%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG Q      I  V SGSL LD ALG+GG+P+GRI+
Sbjct: 3   DRQAALDMALKQIEKQFGKGSIMKLGEQTETR--ISTVPSGSLALDAALGVGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ Q+ GG  AF+DAEHALD +YA+KLGV++  LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDI+VIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K  + + GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYGEGIS  GE+IDLG +  IV KSGAW+S++ +RLGQGR
Sbjct: 241 KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGAWYSYQEERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K FL+EN +I   I+  +R++ GL
Sbjct: 301 ENAKQFLKENKDILLMIQEQIREHYGL 327


>gi|302866030|ref|YP_003834667.1| recA protein [Micromonospora aurantiaca ATCC 27029]
 gi|315502590|ref|YP_004081477.1| reca protein [Micromonospora sp. L5]
 gi|302568889|gb|ADL45091.1| recA protein [Micromonospora aurantiaca ATCC 27029]
 gi|315409209|gb|ADU07326.1| recA protein [Micromonospora sp. L5]
          Length = 349

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/318 (64%), Positives = 261/318 (82%), Gaps = 2/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+ AL+QI + +GKG++M+LG +  +     V+ +GS+ LD+ALG+GG P+GR+V
Sbjct: 6   DREKALDLALAQIDKQFGKGSVMRLGERPVVQTA--VIPTGSIALDVALGVGGLPRGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YAR LGVD   LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEYARALGVDTDALLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T  +
Sbjct: 124 EQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGVL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ S+KD   + GN+T
Sbjct: 184 NNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDVRRIESLKDGTDVVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EFDIMYG+GIS  G LID+GV+ +I+ KSGAW+++ G +LGQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFDIMYGKGISREGSLIDVGVEQAIIRKSGAWYTYDGDQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIE 328
           E ++ FLREN ++A  IE
Sbjct: 304 EKAREFLRENPDVAAEIE 321


>gi|71089158|gb|AAZ23657.1| RecA [uncultured Burkholderia sp.]
          Length = 288

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 204/289 (70%), Positives = 253/289 (87%), Gaps = 1/289 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG++M+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGP+SSGKTT
Sbjct: 1   IEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPKSSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LL+SQPDTGEQALEI D LVR
Sbjct: 60  LTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNELLVSQPDTGEQALEIADALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G R+GQG++
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYSGDRIGQGKD 288


>gi|317125294|ref|YP_004099406.1| recA protein [Intrasporangium calvum DSM 43043]
 gi|315589382|gb|ADU48679.1| recA protein [Intrasporangium calvum DSM 43043]
          Length = 347

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/330 (62%), Positives = 267/330 (80%), Gaps = 2/330 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
            + DK KAL + + QI++ +GKGA+M+LG    +   IEV+ +GS+ LD+ALGIGG P+G
Sbjct: 3   TVQDKDKALSSVMGQIEKNFGKGAVMRLGD--DVRAPIEVIPTGSIALDVALGIGGLPRG 60

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R+VEIYGPESSGKTT+ALH +A +QK GG  AF+DAEHALD  YA++LGVD   LL+SQP
Sbjct: 61  RVVEIYGPESSGKTTVALHAVANAQKAGGIAAFIDAEHALDPDYAQRLGVDTDALLVSQP 120

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT
Sbjct: 121 DTGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLT 180

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            +++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     G
Sbjct: 181 GALNSTGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTEPVG 240

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+TRVKVVKNK+A PFKQ EFDI+YG GIS  G +ID+GV+   V K+GAW++++G +LG
Sbjct: 241 NRTRVKVVKNKVAPPFKQAEFDILYGLGISREGGIIDMGVEHGFVRKAGAWYTYEGDQLG 300

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGL 337
           QG+EN++ FLR+N ++A+ IE  +++  G+
Sbjct: 301 QGKENARNFLRDNPDLADEIEKKVKEKLGV 330


>gi|331698363|ref|YP_004334602.1| protein recA [Pseudonocardia dioxanivorans CB1190]
 gi|326953052|gb|AEA26749.1| Protein recA [Pseudonocardia dioxanivorans CB1190]
          Length = 347

 Score =  435 bits (1118), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/333 (62%), Positives = 268/333 (80%), Gaps = 2/333 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KALE AL+QI++ +GKG++M+LG        I V+ +GS+ LD+ALG+GG P+
Sbjct: 1   MTAPDREKALELALAQIEKNHGKGSVMRLGDD--TRPPIGVIPTGSIALDVALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTT+ALH +A +Q +GG  AF+DAEHALD  YA+ LGVD   LL+SQ
Sbjct: 59  GRVVEIYGPESSGKTTVALHAVASAQASGGIAAFIDAEHALDPEYAKALGVDTDALLVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T ++S S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD   + 
Sbjct: 179 TGALSNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDIRRIETLKDGTDMV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G++TRVKVVKNK+A PFKQ EFD++YG GIS  G LID+GV+  I+ KSGAW++++G ++
Sbjct: 239 GSRTRVKVVKNKVAPPFKQAEFDVLYGVGISREGSLIDVGVEQGIIRKSGAWYTYEGDQM 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           GQG+EN++ FL+EN +IA  +E  +++  G+ A
Sbjct: 299 GQGKENARKFLKENPDIAAEVEKRIKEKLGIGA 331


>gi|313837169|gb|EFS74883.1| protein RecA [Propionibacterium acnes HL037PA2]
 gi|314927809|gb|EFS91640.1| protein RecA [Propionibacterium acnes HL044PA1]
 gi|314971942|gb|EFT16040.1| protein RecA [Propionibacterium acnes HL037PA3]
 gi|328907273|gb|EGG27039.1| RecA protein [Propionibacterium sp. P08]
          Length = 348

 Score =  435 bits (1118), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/327 (63%), Positives = 263/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL  AL QI++ +GKG+IM+LG Q ++   I  + +GS+ LD+ALG+GG P+GRIV
Sbjct: 6   DREKALATALQQIEKQHGKGSIMRLGEQETV--KIAAIPTGSVALDVALGVGGLPRGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA +Q  GG CAF+DAEHALD  YARKLGVD  +LL+SQPD G
Sbjct: 64  EIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPEYARKLGVDTDSLLVSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGA+++IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADTLVRSGALELIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + +    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD   + GN+T
Sbjct: 184 NAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRIETLKDGSEMVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV   ++ KSG+WFS+  ++LGQG+
Sbjct: 244 RVKVVKNKVAPPFKQAEFDILYGQGISREGSLIDMGVDCGLITKSGSWFSYNNEQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN + FL+ N +IA  IE  +  + GL
Sbjct: 304 ENVRNFLKGNPDIANEIEDKILTHLGL 330


>gi|120403410|ref|YP_953239.1| recombinase A [Mycobacterium vanbaalenii PYR-1]
 gi|166220658|sp|A1T7T3|RECA_MYCVP RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|119956228|gb|ABM13233.1| recA protein [Mycobacterium vanbaalenii PYR-1]
          Length = 350

 Score =  435 bits (1118), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 204/329 (62%), Positives = 268/329 (81%), Gaps = 2/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE AL+QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 7   DREKALELALAQIDKNFGKGSVMRLGEE--VRQPIAVIPTGSIALDVALGIGGLPRGRVV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD   LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAQKLGVDTDALLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+T
Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF++ G++LGQG+
Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVEHGFIRKSGSWFTYDGEQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           EN++ FL +N+++A  IE  +++  G+ A
Sbjct: 305 ENARNFLLQNVDVANEIEKKIKEKLGIGA 333


>gi|159900707|ref|YP_001546954.1| recombinase A [Herpetosiphon aurantiacus ATCC 23779]
 gi|238687059|sp|A9AXA6|RECA_HERA2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|159893746|gb|ABX06826.1| recA protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 358

 Score =  435 bits (1118), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/322 (64%), Positives = 260/322 (80%), Gaps = 3/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AALSQI R +GKGAIM++  Q      IE + +GS+ LD+ALG+GG P+GR++
Sbjct: 6   EKEKALAAALSQIDRQFGKGAIMRMSDQRL---SIEAIPTGSIALDLALGVGGIPRGRVI 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL  H +A++QK GG  AF+DAEHA D +YA   GV++++LL+SQPDTG
Sbjct: 63  EIYGPESSGKTTLTQHIVAETQKMGGVAAFIDAEHAFDPVYAANCGVNVEDLLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+D+IV+DSVAAL PRAEIEGDMG+S  G+QARLMSQALRKL+ ++
Sbjct: 123 EQALEICETLVRSGAIDVIVVDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKLSGAV 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S+  L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIR+V SIK    +TG + 
Sbjct: 183 SKSRTALIFINQLRMKIGVMFGNPETTTGGNALKFYASVRLDIRKVESIKQGQDVTGARA 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EFDIMY EGIS  G ++D+GV   I+ KSGAWF     RLGQGR
Sbjct: 243 RVKVVKNKVAPPFRQAEFDIMYNEGISREGNIVDVGVTMEILRKSGAWFYLGDDRLGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           EN+K FL++N  +A+ IE ++R
Sbjct: 303 ENAKQFLKDNPALADEIEKMIR 324


>gi|154173783|ref|YP_001409018.1| recombinase A [Campylobacter curvus 525.92]
 gi|112804083|gb|EAU01427.1| protein RecA [Campylobacter curvus 525.92]
          Length = 364

 Score =  435 bits (1118), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 209/334 (62%), Positives = 267/334 (79%), Gaps = 5/334 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+E AL QI + +GKG +++LG +    E IE + +GS+GLD+ALGIGG PKGRI+
Sbjct: 19  DKKKAIELALKQIDKAFGKGTLLRLGDKQ--VEPIESIPTGSIGLDLALGIGGVPKGRII 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD  YA  LGVD  NL +SQPD G
Sbjct: 77  EIYGPESSGKTTLTLHIIAECQKAGGICAFVDAEHALDVKYASNLGVDTDNLYVSQPDFG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L R+GAVD+IV+DSVAALTP++E+EGDMG+   G+QARLMSQALRKLT  +
Sbjct: 137 EQALEIVETLARTGAVDLIVVDSVAALTPKSEVEGDMGDQHVGLQARLMSQALRKLTGIL 196

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           S+ K  ++FINQ+RMKIG+M +G+PETTTGGNALKFYSSVR+D+R++ ++K  +   GN+
Sbjct: 197 SKMKTTVIFINQIRMKIGMMGYGTPETTTGGNALKFYSSVRIDVRKIATLKQNEEPIGNR 256

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           T+ KVVKNK+A PFK  EFDIMYGEGIS  GE++D GVK  I+DKSGAWFS+K ++LGQG
Sbjct: 257 TKAKVVKNKVAPPFKVAEFDIMYGEGISREGEIVDYGVKLDIIDKSGAWFSYKAEKLGQG 316

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343
           REN+K +L+E+ + A+ I + ++ + G+  D LL
Sbjct: 317 RENAKAYLKEHPQTADEIVASIKGSMGI--DHLL 348


>gi|111023723|ref|YP_706695.1| recombinase A [Rhodococcus jostii RHA1]
 gi|122955075|sp|Q0S1P9|RECA_RHOSR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|110823253|gb|ABG98537.1| recombinase A [Rhodococcus jostii RHA1]
          Length = 347

 Score =  435 bits (1118), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/330 (62%), Positives = 266/330 (80%), Gaps = 2/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+ AL+QI + +GKG++M+LG    + + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 7   DRDKALDLALAQIDKNFGKGSVMRLGE--GVRQPIAVIPTGSIALDVALGIGGLPRGRVV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD   LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAQKLGVDTDALLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLIRSGALDILVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD     GN+T
Sbjct: 185 SNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDI+YG GIS  G LID+GV+   + KSG+W++++G +LGQG+
Sbjct: 245 RVKVVKNKVAPPFKQAEFDILYGLGISKEGSLIDMGVEHGFIRKSGSWYTYEGDQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           EN++ FL EN +I + IE  +++  G+ AD
Sbjct: 305 ENARKFLLENTDIRDEIEKKIKEKLGIGAD 334


>gi|32266132|ref|NP_860164.1| recombinase A [Helicobacter hepaticus ATCC 51449]
 gi|60393015|sp|Q7VIH2|RECA_HELHP RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|32262181|gb|AAP77230.1| RecA protein [Helicobacter hepaticus ATCC 51449]
          Length = 345

 Score =  435 bits (1118), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 209/336 (62%), Positives = 268/336 (79%), Gaps = 4/336 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + KA+E AL QI + +GKGA+++LG +    E I+ +S+GSLGLD+ALGIGG PKGRI+E
Sbjct: 6   RQKAIELALKQIDKAFGKGALVRLGDKQ--VEKIDSISTGSLGLDMALGIGGVPKGRIIE 63

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL+L  +A+ Q+ GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTGE
Sbjct: 64  IYGPESSGKTTLSLQIVAECQRNGGICAFIDAEHALDVYYAKRLGVDTENLLVSQPDTGE 123

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI + L RSGAVD+IVIDSVAALTP+AEIEGDMG+   G+QARLMS ALRK+T  + 
Sbjct: 124 QALEILETLTRSGAVDLIVIDSVAALTPKAEIEGDMGDQHVGLQARLMSHALRKITGVLH 183

Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +    L+FINQ+RMKIG M +GSPETTTGGNALKFY+SVR+D+RRV ++K  D   GN+T
Sbjct: 184 KMNATLIFINQIRMKIGTMGYGSPETTTGGNALKFYASVRIDVRRVATLKQNDQQIGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           + KVVKNK+A PF++ EFDIM+GEGIS  GE+ID G+K  I+DKSGAW S+  ++LGQGR
Sbjct: 244 KAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGIKLDIIDKSGAWLSYNDKKLGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           EN+KI L+EN  +A+ I + +++  G   D +L  P
Sbjct: 304 ENAKIVLKENKSLADEITAKIKEQIG-SKDEILPLP 338


>gi|288940829|ref|YP_003443069.1| recA protein [Allochromatium vinosum DSM 180]
 gi|288896201|gb|ADC62037.1| recA protein [Allochromatium vinosum DSM 180]
          Length = 347

 Score =  435 bits (1118), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/345 (66%), Positives = 285/345 (82%), Gaps = 8/345 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL AAL+QI++ +GKG++M++G  G++   IE +S+GSLGLD+ALGIGG PKGR++
Sbjct: 4   NRKKALAAALTQIEKQFGKGSVMRMGDVGAV-RNIEAISTGSLGLDLALGIGGVPKGRVI 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+SQK GGT AFVDAEHALD +YA KLGV++ +LL+SQPDTG
Sbjct: 63  EIYGPESSGKTTLTLHIIAESQKLGGTAAFVDAEHALDPVYAEKLGVNMTDLLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSGAVD++V+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDMLVRSGAVDVVVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR GSIK  D + GN+T
Sbjct: 183 KRSNCCVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGSIKKGDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF+Q EFDI+YG+GIS  GE+IDLGV    +DKSGAW+S+ G R+GQG+
Sbjct: 243 KVKVVKNKVAPPFRQAEFDILYGQGISREGEIIDLGVAEGFIDKSGAWYSYDGNRIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           +N + FL EN  IA+ IE+ +R       D LL +  +    +AD
Sbjct: 303 DNVRNFLCENPGIAQAIEARIR-------DKLLPKGGVEAPAEAD 340


>gi|149688790|gb|ABR27806.1| RecA [Candidatus Pelagibacter ubique]
          Length = 289

 Score =  435 bits (1118), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 201/291 (69%), Positives = 254/291 (87%), Gaps = 2/291 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG + ++   +E +S+GSL LD+ALGIGG PKGR++E+YGPESSGKTTLAL  +
Sbjct: 1   KGSVMKLGQRRAM--DVESISTGSLSLDVALGIGGLPKGRVIEVYGPESSGKTTLALQVL 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAF+DAEHALD IYA+KLGVD + LLISQPDTGEQALEI D LV+SG++ +
Sbjct: 59  AEAQKAGGICAFIDAEHALDPIYAKKLGVDTEELLISQPDTGEQALEIADTLVKSGSISV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAALTPRAEIEG+MG+   G+Q+RLMSQALRKLT SIS +  +++FINQ+RMKIG
Sbjct: 119 IVIDSVAALTPRAEIEGEMGDHHVGLQSRLMSQALRKLTGSISSTNTMMIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFGSPETT+GGNALKFYSSVR+DIRR+G+IK+ + I GN TRVKVVKNK+A PFK VEF
Sbjct: 179 VMFGSPETTSGGNALKFYSSVRMDIRRIGAIKNGEEIIGNSTRVKVVKNKVAPPFKVVEF 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
           D+MYG+GIS  GEL+DLG KA IV+K+GAW+++KG+++GQGREN+K +L +
Sbjct: 239 DLMYGKGISKVGELVDLGAKADIVEKAGAWYAYKGEKIGQGRENAKTYLEQ 289


>gi|319649486|ref|ZP_08003642.1| recA protein [Bacillus sp. 2_A_57_CT2]
 gi|317398648|gb|EFV79330.1| recA protein [Bacillus sp. 2_A_57_CT2]
          Length = 346

 Score =  435 bits (1118), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/333 (62%), Positives = 267/333 (80%), Gaps = 2/333 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  ALE AL QI++ +GKG+IM+LG Q      I    SGSL LD ALG+GG+P+GRI+
Sbjct: 3   DRQAALEMALKQIEKQFGKGSIMKLGEQTD--RKISTAPSGSLALDAALGVGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ Q +GG  AF+DAEHALD +YA+ LGV++  LL+SQPDTG
Sbjct: 61  EIYGPESSGKTTVALHAIAEVQASGGQAAFIDAEHALDPVYAQNLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDI+VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR  ++K  + + GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNEMVGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYGEGIS  GE+IDLG +  IV KSG+W+S+  +RLGQGR
Sbjct: 241 KIKVVKNKVAPPFRVAEVDIMYGEGISKEGEIIDLGSELDIVQKSGSWYSYNEERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343
           EN+K+FL+EN EI   I+  +R++ GL  D ++
Sbjct: 301 ENAKVFLKENPEIRLTIQKQIREHYGLDGDKVI 333


>gi|157692378|ref|YP_001486840.1| recombinase A [Bacillus pumilus SAFR-032]
 gi|166918708|sp|A8FDG3|RECA_BACP2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|157681136|gb|ABV62280.1| recombination protein A [Bacillus pumilus SAFR-032]
          Length = 346

 Score =  434 bits (1117), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 211/327 (64%), Positives = 265/327 (81%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG Q      I  V SGSL LD ALGIGG+P+GRI+
Sbjct: 3   DRQAALDMALKQIEKQFGKGSIMKLGEQTDTR--ISTVPSGSLALDTALGIGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ Q+ GG  AF+DAEHALD +YA+KLGV++  LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDI+VIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K  + I GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIMGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PF+  E DIMYGEGIS  GE+IDLG +  IV KSGAW+S++ +RLGQGR
Sbjct: 241 RIKVVKNKVAPPFRIAEVDIMYGEGISKEGEIIDLGSELDIVQKSGAWYSYQEERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K FL+EN +I   I+  +R++ GL
Sbjct: 301 ENAKQFLKENKDILLMIQEQIREHYGL 327


>gi|326794021|ref|YP_004311841.1| protein recA [Marinomonas mediterranea MMB-1]
 gi|326544785|gb|ADZ90005.1| Protein recA [Marinomonas mediterranea MMB-1]
          Length = 348

 Score =  434 bits (1117), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 217/323 (67%), Positives = 270/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AALSQI+R +GKGAIM++G +G+  + I+ VS+GSLGLDIALG GG P GRI 
Sbjct: 6   NKKKALDAALSQIERQFGKGAIMKMG-EGAKLD-IDTVSTGSLGLDIALGAGGLPFGRIC 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAF+DAEHALD  YA KLGV++  LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLSVIAEAQKQGKTCAFIDAEHALDPGYAEKLGVNIGELLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS +VD++++DSVAAL P++EIEG+MG+S  G+QARL+SQA+RKLT SI
Sbjct: 124 EQALEICDMLVRSNSVDVVIVDSVAALVPKSEIEGEMGDSSVGVQARLLSQAMRKLTGSI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GS+K  D + GN+T
Sbjct: 184 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKQGDEVIGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF IMYG GI   GE+IDLGVK   VDKSGAW+++ G ++GQG+
Sbjct: 244 RVKVVKNKIAPPFKQTEFQIMYGRGIYRMGEIIDLGVKQGFVDKSGAWYAYGGSKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L +N EIA+ IE+ +R+
Sbjct: 304 ANAAQYLSDNPEIAQEIETKIRE 326


>gi|110348494|gb|ABG72901.1| RecA [Propionibacterium acnes]
 gi|110348496|gb|ABG72902.1| RecA [Propionibacterium acnes]
 gi|110348498|gb|ABG72903.1| RecA [Propionibacterium acnes]
 gi|110348500|gb|ABG72904.1| RecA [Propionibacterium acnes]
 gi|110348502|gb|ABG72905.1| RecA [Propionibacterium acnes]
          Length = 348

 Score =  434 bits (1117), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/327 (63%), Positives = 262/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL  AL QI++ +GKG+IM+LG Q ++   I  + +GS+ LD+ALG+GG P+GRIV
Sbjct: 6   DREKALATALQQIEKQHGKGSIMRLGEQETV--KIAAIPTGSVALDVALGVGGLPRGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA +Q  GG CAF+DAEHALD  YARKLGVD  +LL+SQPD G
Sbjct: 64  EIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPEYARKLGVDTDSLLVSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGA+++IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADTLVRSGALELIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + +    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RRV ++KD   + GN+T
Sbjct: 184 NAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRVETLKDGSEMVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV KNK+A PFKQ EFDI+YG+GIS  G LID+GV   I+ KSG+WFS+  ++LGQG+
Sbjct: 244 RVKVAKNKVAPPFKQAEFDILYGQGISREGSLIDMGVDCGIITKSGSWFSYNNEQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN + FL+ N ++A  IE  +  + GL
Sbjct: 304 ENVRKFLKGNPDVANEIEDKILTHLGL 330


>gi|229061382|ref|ZP_04198728.1| hypothetical protein bcere0026_34690 [Bacillus cereus AH603]
 gi|228717921|gb|EEL69567.1| hypothetical protein bcere0026_34690 [Bacillus cereus AH603]
          Length = 343

 Score =  434 bits (1117), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/343 (60%), Positives = 273/343 (79%), Gaps = 2/343 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG Q      I  +SSGSL LD+ALG+GG+P+GR++
Sbjct: 3   DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RRISTISSGSLALDVALGVGGYPRGRVI 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPDTG
Sbjct: 61  EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   +K  + I GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYGEGIS  GE++D+  +  IV KSGAW+S+  +RLGQGR
Sbjct: 241 KIKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           ENSK FL+EN ++ E I   +R++ G+  +S +++   +T+ D
Sbjct: 301 ENSKQFLKENTDLREEIAFFVREHHGIGENSGVEDTEDSTRQD 343


>gi|153810464|ref|ZP_01963132.1| hypothetical protein RUMOBE_00845 [Ruminococcus obeum ATCC 29174]
 gi|149833643|gb|EDM88724.1| hypothetical protein RUMOBE_00845 [Ruminococcus obeum ATCC 29174]
          Length = 351

 Score =  434 bits (1117), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 214/339 (63%), Positives = 272/339 (80%), Gaps = 3/339 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALEAAL  I++ YGKG++M+LG   S    +E V +GSLGLDIALG+GG PKGRIV
Sbjct: 5   EKQKALEAALGHIEKQYGKGSVMKLGDSSSNMV-VEAVPTGSLGLDIALGVGGVPKGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YA+ +GVD+ NL ISQPD G
Sbjct: 64  EIYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ +VRSGAVDI+++DSVAAL P+AEIEGDMG+S  G+ ARLMSQALRKLT++I
Sbjct: 124 EQALEITETMVRSGAVDIVIVDSVAALVPKAEIEGDMGDSHVGLHARLMSQALRKLTAAI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SRS C+++FINQ+R K+GVMFG+PETTTGG ALKFY+SVRLD+RR  ++K    + GN  
Sbjct: 184 SRSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASVRLDVRRTETLKQGGEMVGNHV 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PFKQ EFDIM+G GIS  GE++DL  + ++V+KSGAW+S+ G+R+GQGR
Sbjct: 244 KVKVVKNKVAPPFKQAEFDIMFGTGISREGEILDLASECNVVNKSGAWYSYNGERIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA--DSLLQEPA 347
           EN KIFL+++ EI E IE  +R    L+   ++  Q PA
Sbjct: 304 ENVKIFLKDHPEICEEIEKQVRIQYHLLPEEEAAQQNPA 342


>gi|197259606|gb|ACH56444.1| RecA type I [Propionibacterium acnes]
          Length = 348

 Score =  434 bits (1117), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/327 (63%), Positives = 262/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL  AL QI++ +GKG+IM+LG Q ++   I  + +GS+ LD+ALG+GG P+GRIV
Sbjct: 6   DREKALATALQQIEKQHGKGSIMRLGEQETV--KIAAIPTGSVALDVALGVGGLPRGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA +Q  GG CAF+DAEHALD  YARKLGVD  +LL+SQPD G
Sbjct: 64  EIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPEYARKLGVDTDSLLVSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGA+++IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADTLVRSGALELIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + +    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RRV ++KD   + GN+T
Sbjct: 184 NAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRVETLKDGSEMVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV KNK+A PFKQ EFDI+YG+GIS  G LID+GV   I+ KSG+WFS+  ++LGQG+
Sbjct: 244 RVKVAKNKVAPPFKQAEFDILYGQGISREGSLIDMGVDCGIIIKSGSWFSYNNEQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN + FLR N ++A  IE  +  + GL
Sbjct: 304 ENVRKFLRGNPDVANEIEDKILTHLGL 330


>gi|283783473|ref|YP_003374227.1| RecA protein [Gardnerella vaginalis 409-05]
 gi|298252554|ref|ZP_06976348.1| RecA/RadA DNA recombinase [Gardnerella vaginalis 5-1]
 gi|283442058|gb|ADB14524.1| RecA protein [Gardnerella vaginalis 409-05]
 gi|297532918|gb|EFH71802.1| RecA/RadA DNA recombinase [Gardnerella vaginalis 5-1]
          Length = 379

 Score =  434 bits (1117), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 204/344 (59%), Positives = 270/344 (78%), Gaps = 4/344 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  ALE AL+ ++R YGKG+ M+LG +    + +EV+ +GSL LD ALGIGG P+GRIVE
Sbjct: 23  RQAALETALANVERQYGKGSAMRLGDRP--MQDVEVIPTGSLALDTALGIGGVPRGRIVE 80

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTLALH +A +QK GG  AF+DAEHALD +YARKLGVD   L++SQPD GE
Sbjct: 81  VYGPESSGKTTLALHIVANAQKNGGVAAFIDAEHALDPVYARKLGVDTDALIVSQPDNGE 140

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DML+RSGA+D+IV+DSVAAL P+AEI+GDMG+S  G+QARLMSQALRK+T ++S
Sbjct: 141 QALEIADMLIRSGALDVIVVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKMTGALS 200

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGV FG+PETTTGG ALKFY+SVR+DIRRV +IK+ +   GN+T+
Sbjct: 201 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRMDIRRVSTIKEGEEAVGNRTK 260

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNKMA PFK  EFD++YGEGIS  G +ID+G++A ++ KSG+WF++ G++LGQGRE
Sbjct: 261 VKIVKNKMAPPFKTAEFDVLYGEGISTEGSVIDMGLQAEVIKKSGSWFTYDGEQLGQGRE 320

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVA--DSLLQEPAINTKDD 353
           N + FL++N  I E I   ++   GL+   D   ++  ++  DD
Sbjct: 321 NVRKFLKDNPAITEEISEKVKALLGLMHTEDQFAEDSELDQFDD 364


>gi|326384499|ref|ZP_08206179.1| recombinase A [Gordonia neofelifaecis NRRL B-59395]
 gi|326196844|gb|EGD54038.1| recombinase A [Gordonia neofelifaecis NRRL B-59395]
          Length = 347

 Score =  434 bits (1117), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 211/343 (61%), Positives = 266/343 (77%), Gaps = 7/343 (2%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+ KAL+ AL+QI + +GKG++M+LG        +EV+ +GS+ LDIALGIGG P+GR
Sbjct: 4   VTDRQKALDLALAQIDKNFGKGSVMRLGEDAR--PPMEVIPTGSVALDIALGIGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVE+YGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA KLGVD+  LL+SQPD
Sbjct: 62  IVEVYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAAKLGVDIDALLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DML+RSGA+DI+VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+TS
Sbjct: 122 TGEQALEIADMLIRSGALDILVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTS 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD     GN
Sbjct: 182 GLNNSNTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFKQ EFDI+YG GIS  G LIDLGV    + KSG+WF+++G +LGQ
Sbjct: 242 RTRVKVVKNKVAPPFKQAEFDILYGHGISREGSLIDLGVAEGFIRKSGSWFTYEGDQLGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGL-----VADSLLQEP 346
           G+EN++ FL  N ++A  IE  ++   G+      AD +  EP
Sbjct: 302 GKENARKFLIANPDVANEIEDKIKDKLGIGRPPADADEIAPEP 344


>gi|42416867|gb|AAS16315.1| RecA [Mycobacterium mucogenicum]
 gi|42416891|gb|AAS16327.1| RecA [Mycobacterium mucogenicum]
          Length = 350

 Score =  434 bits (1117), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/343 (60%), Positives = 269/343 (78%), Gaps = 9/343 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE AL+QI + +GKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 7   DREKALELALAQIDKSFGKGSVMRLGEETR--QPISVIPTGSIALDVALGIGGLPRGRVI 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD   LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLVRSGAIDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+T
Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFKQ EFDI+YG GIS  G LID+GV+   + KSG+WF++ G++LGQG+
Sbjct: 245 RVKIVKNKVAPPFKQAEFDILYGRGISREGSLIDMGVEHGFIRKSGSWFTYDGEQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL-------VADSLLQEP 346
           EN++ +L +N++ A  IE  +++  G+        AD +L  P
Sbjct: 305 ENARNYLLQNVDAANEIEKKIKEKLGIGAVLTDGAADDVLPAP 347


>gi|260061218|ref|YP_003194298.1| recombinase A [Robiginitalea biformata HTCC2501]
 gi|88785350|gb|EAR16519.1| recombinase A [Robiginitalea biformata HTCC2501]
          Length = 335

 Score =  434 bits (1117), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 204/310 (65%), Positives = 256/310 (82%), Gaps = 3/310 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+  L ++ + YGKG +M++G    + + +EV+ SGSLGLD+ALG+GG+P+GR+VE
Sbjct: 8   KLKALKLTLDKLDKTYGKGTVMKMGDD--VAQDVEVIPSGSLGLDVALGVGGYPRGRVVE 65

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA++QK GG  AF+DAEHA D  YA+ LGVD+ NL+ISQPD GE
Sbjct: 66  IYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAEHAFDRFYAKNLGVDIDNLIISQPDHGE 125

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RSGA+DIIV+DSVAALTP++EIEG+MG+S  G+ ARLMSQALRKLT+SIS
Sbjct: 126 QALEIADNLIRSGAIDIIVVDSVAALTPKSEIEGEMGDSKVGLHARLMSQALRKLTASIS 185

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQT 250
           ++ C ++FINQ+R KIGVMFG+PETTTGGNALKFYSSVRLDIRR   IK+ D  + GN+T
Sbjct: 186 KTHCTVIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRSTQIKNTDGDVQGNKT 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+ VEFDIMYGEGIS  GE++D+GV   I+ KSG+WFS+   +LGQGR
Sbjct: 246 RVKVVKNKVAPPFRTVEFDIMYGEGISKVGEILDIGVDYEIIQKSGSWFSYGDTKLGQGR 305

Query: 311 ENSKIFLREN 320
           +  KI L++N
Sbjct: 306 DAVKILLKDN 315


>gi|223041840|ref|ZP_03612028.1| recombinase A [Actinobacillus minor 202]
 gi|223017333|gb|EEF15756.1| recombinase A [Actinobacillus minor 202]
          Length = 373

 Score =  434 bits (1117), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 216/322 (67%), Positives = 270/322 (83%), Gaps = 2/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + KAL AAL+QI++ +GKG+IM+LG   ++   IE VS+GSLGLD+ALGIGG P GRIVE
Sbjct: 21  REKALAAALAQIEKQFGKGSIMKLGQTQNL--DIEAVSTGSLGLDMALGIGGLPMGRIVE 78

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPESSGKTTL L TIAQ+QK G TCAF+DAEHALD +YARKLGV+  +LLISQPD GE
Sbjct: 79  IFGPESSGKTTLTLSTIAQAQKAGKTCAFIDAEHALDPVYARKLGVNTDDLLISQPDNGE 138

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT +I 
Sbjct: 139 QALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTGNIK 198

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
            + C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G +KD D+I G++T+
Sbjct: 199 NTNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGVVKDGDNIIGSETK 258

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF++V+FDIMYGEGI+   EL+ L  K   + K+GAWFS++G ++GQG+ 
Sbjct: 259 VKVVKNKVAPPFREVQFDIMYGEGIARTNELLILAEKQGFIKKAGAWFSYEGDKIGQGKN 318

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
           N+  +L E+ E+A  IE+ LR+
Sbjct: 319 NAIKWLNEHPEVASKIEADLRE 340


>gi|47571272|gb|AAT35793.1| RecA [Mycobacterium gordonae]
          Length = 324

 Score =  434 bits (1117), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 203/318 (63%), Positives = 263/318 (82%), Gaps = 2/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 6   DREKALELAMAQIEKSYGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD  +  GN+T
Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTNAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV    + KSGAWF+++G++LGQG+
Sbjct: 244 RVKVVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVDQGFIRKSGAWFTYEGEQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIE 328
           EN++ FL EN +I   IE
Sbjct: 304 ENARNFLLENGDIGNEIE 321


>gi|298207281|ref|YP_003715460.1| RecA [Croceibacter atlanticus HTCC2559]
 gi|83849917|gb|EAP87785.1| RecA [Croceibacter atlanticus HTCC2559]
          Length = 337

 Score =  434 bits (1116), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/314 (65%), Positives = 257/314 (81%), Gaps = 3/314 (0%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           L ++ + YGKG +M++  Q      +E +S+GSLGLD+ALG+GG+P+GRIVEIYGPESSG
Sbjct: 18  LDKMDKTYGKGTVMKMSDQS--VSDVEAISTGSLGLDLALGVGGYPRGRIVEIYGPESSG 75

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTL LH IA++QK GG  AF+DAEHA D  YA KLGVDL+NL+ISQPD GEQALEITD 
Sbjct: 76  KTTLTLHAIAEAQKAGGIAAFIDAEHAFDRFYAEKLGVDLENLIISQPDNGEQALEITDN 135

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           L+RSGA+DIIVIDSVAALTP++EIEG+MG+S  G+ ARLMSQALRKLT SIS++KC ++F
Sbjct: 136 LIRSGAIDIIVIDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTGSISKTKCTVIF 195

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-ITGNQTRVKVVKNK 258
           INQ+R KIGVMFG+PETTTGGNALKFY SVRLDIRR   IKD +S + GN+TRVKVVKNK
Sbjct: 196 INQLREKIGVMFGNPETTTGGNALKFYCSVRLDIRRSTQIKDSNSEVQGNKTRVKVVKNK 255

Query: 259 MASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLR 318
           +A PF+  EFDIMYG+GIS  GE+ID+GV   IV K+G+WFS++  +LGQGR+  K  L 
Sbjct: 256 VAPPFRTAEFDIMYGQGISKVGEIIDIGVDYEIVKKAGSWFSYEDTKLGQGRDAVKALLL 315

Query: 319 ENIEIAENIESLLR 332
           +N E+ E +E+ ++
Sbjct: 316 DNPELMEELETKIK 329


>gi|284039880|ref|YP_003389810.1| recA protein [Spirosoma linguale DSM 74]
 gi|283819173|gb|ADB41011.1| recA protein [Spirosoma linguale DSM 74]
          Length = 364

 Score =  434 bits (1116), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 213/351 (60%), Positives = 274/351 (78%), Gaps = 4/351 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+  + ++ + +GKG +M+L S+  + + I V+S+GSLGLD+ALGIGG P+GR+VE
Sbjct: 17  KLKALQTTIEKLDKAFGKGTVMRL-SESKVVD-IPVISTGSLGLDLALGIGGMPRGRVVE 74

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL +H IA++QK GG  AF+DAEHA D +YA KLG+D KNLLISQPD GE
Sbjct: 75  IYGPESSGKTTLTMHCIAEAQKAGGLAAFIDAEHAFDRVYAEKLGIDTKNLLISQPDNGE 134

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI + L+ SGA+DIIVIDSVAAL P+AEIEG+MGES  G+QARLMSQALRKLT +I+
Sbjct: 135 QALEIAEHLISSGAIDIIVIDSVAALVPKAEIEGEMGESKMGLQARLMSQALRKLTGTIN 194

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSITGNQT 250
           ++ C  +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR+G IK+  D++ GN+T
Sbjct: 195 KTGCCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGQIKEGADNVVGNRT 254

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A+PFK VEFDIMYG+GIS  GE++DL V+  +V KSG+WFS+   RL QGR
Sbjct: 255 KVKVVKNKLAAPFKVVEFDIMYGQGISKVGEILDLAVEMEVVKKSGSWFSYGTSRLAQGR 314

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           +  K  L +N E+   IE  +R       D+LL +P +    D D+ + D+
Sbjct: 315 DAVKELLLDNPELMGEIEGKIRAKIADDQDALL-DPVLAATADDDEGEIDD 364


>gi|47571274|gb|AAT35794.1| RecA [Mycobacterium marinum]
 gi|47571276|gb|AAT35795.1| RecA [Mycobacterium marinum]
          Length = 324

 Score =  434 bits (1116), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 201/318 (63%), Positives = 263/318 (82%), Gaps = 2/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI++ YGKG++M+LG +  + + I ++ +GS+ LD+ALGIGG P+GR++
Sbjct: 6   DREKALELAMAQIEKSYGKGSVMRLGDE--VRQPISIIPTGSIALDVALGIGGLPRGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+T
Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK++ PFKQ EFDI+YG GIS  G LID+GV    + KSGAWF+++G++LGQG+
Sbjct: 244 RVKIVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGAWFTYEGEQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIE 328
           EN++ FL EN E+A  IE
Sbjct: 304 ENARNFLLENGEVANEIE 321


>gi|282854040|ref|ZP_06263377.1| RecA protein [Propionibacterium acnes J139]
 gi|50082583|gb|AAT69989.1| RecA [Propionibacterium acnes]
 gi|50082585|gb|AAT69990.1| RecA [Propionibacterium acnes]
 gi|50082591|gb|AAT69993.1| RecA [Propionibacterium acnes]
 gi|50082597|gb|AAT69996.1| RecA [Propionibacterium acnes]
 gi|50082599|gb|AAT69997.1| RecA [Propionibacterium acnes]
 gi|50082601|gb|AAT69998.1| RecA [Propionibacterium acnes]
 gi|50082603|gb|AAT69999.1| RecA [Propionibacterium acnes]
 gi|50082607|gb|AAT70001.1| RecA [Propionibacterium acnes]
 gi|50082635|gb|AAT70015.1| RecA [Propionibacterium acnes]
 gi|50082637|gb|AAT70016.1| RecA [Propionibacterium acnes]
 gi|50082639|gb|AAT70017.1| RecA [Propionibacterium acnes]
 gi|50082643|gb|AAT70019.1| RecA [Propionibacterium acnes]
 gi|50082645|gb|AAT70020.1| RecA [Propionibacterium acnes]
 gi|50082647|gb|AAT70021.1| RecA [Propionibacterium acnes]
 gi|50082649|gb|AAT70022.1| RecA [Propionibacterium acnes]
 gi|50082651|gb|AAT70023.1| RecA [Propionibacterium acnes]
 gi|68137189|gb|AAY85535.1| RecA [Propionibacterium acnes]
 gi|91177071|gb|ABE26890.1| putative immunogenic protein antigen 84 [Propionibacterium acnes]
 gi|110348488|gb|ABG72898.1| RecA [Propionibacterium acnes]
 gi|110348492|gb|ABG72900.1| RecA [Propionibacterium acnes]
 gi|282583493|gb|EFB88873.1| RecA protein [Propionibacterium acnes J139]
 gi|314923007|gb|EFS86838.1| protein RecA [Propionibacterium acnes HL001PA1]
 gi|314966783|gb|EFT10882.1| protein RecA [Propionibacterium acnes HL082PA2]
 gi|314981118|gb|EFT25212.1| protein RecA [Propionibacterium acnes HL110PA3]
 gi|315091944|gb|EFT63920.1| protein RecA [Propionibacterium acnes HL110PA4]
 gi|315093300|gb|EFT65276.1| protein RecA [Propionibacterium acnes HL060PA1]
 gi|315103445|gb|EFT75421.1| protein RecA [Propionibacterium acnes HL050PA2]
 gi|327327609|gb|EGE69385.1| protein RecA [Propionibacterium acnes HL103PA1]
          Length = 348

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/327 (62%), Positives = 262/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL  AL QI++ +GKG+IM+LG Q ++   I  + +GS+ LD+ALG+GG P+GRIV
Sbjct: 6   DREKALATALQQIEKQHGKGSIMRLGEQETV--KIAAIPTGSVALDVALGVGGLPRGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA +Q  GG CAF+DAEHALD  YARKLGVD  +LL+SQPD G
Sbjct: 64  EIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPEYARKLGVDTDSLLVSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGA++++V+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADTLVRSGALELVVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + +    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RRV ++KD   + GN+T
Sbjct: 184 NAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRVETLKDGSEMVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV KNK+A PFKQ EFDI+YG+GIS  G LID+GV   I+ KSG+WFS+  ++LGQG+
Sbjct: 244 RVKVAKNKVAPPFKQAEFDILYGQGISREGSLIDMGVDCGIITKSGSWFSYNNEQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN + FL+ N ++A  IE  +  + GL
Sbjct: 304 ENVRKFLKGNPDVANEIEDKILTHLGL 330


>gi|162424785|gb|ABX90070.1| RecA protein [Burkholderia nodosa]
          Length = 282

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/283 (72%), Positives = 249/283 (87%), Gaps = 1/283 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGD-GDAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  IAEMQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I ++ C+++FINQ+RMKI
Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKKTNCMVIFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + G++TRVKVVKNK+A PF++  
Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGSETRVKVVKNKVAPPFREAV 239

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           FDI+YGEGIS  GE++DLGV+A IVDK+GAW+S+ G+R+GQG+
Sbjct: 240 FDILYGEGISRQGEIVDLGVQAKIVDKAGAWYSYNGERIGQGK 282


>gi|225017549|ref|ZP_03706741.1| hypothetical protein CLOSTMETH_01476 [Clostridium methylpentosum
           DSM 5476]
 gi|224949699|gb|EEG30908.1| hypothetical protein CLOSTMETH_01476 [Clostridium methylpentosum
           DSM 5476]
          Length = 392

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 200/324 (61%), Positives = 265/324 (81%), Gaps = 2/324 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KALE AL+QI++ +G+GA+M+LG   ++   +E +S+GS+G+DIALGIGG P+GRIV
Sbjct: 20  DKKKALETALAQIEKQFGQGAVMKLGQATAM--NVEAISTGSIGMDIALGIGGVPRGRIV 77

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+AL  +AQ+QK GG  AF+D EHALD +YA+ LGVD+ +LL+SQP++G
Sbjct: 78  EIYGPESSGKTTVALSIVAQAQKAGGEAAFIDVEHALDPVYAKALGVDIDSLLVSQPNSG 137

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+D+IVIDSVAA+T +AEIEG+MG++  G+QARLMSQA+RKLT  I
Sbjct: 138 EQALEIAEALVRSGAIDVIVIDSVAAMTTKAEIEGEMGDTHVGLQARLMSQAMRKLTGII 197

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++ C+ +FINQ+R KIGVM+G+PETT GG ALKFYSSVR++IRR   IK+   + GN+T
Sbjct: 198 GKTNCVALFINQVREKIGVMYGNPETTPGGRALKFYSSVRMEIRRSEQIKNGSEVIGNRT 257

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R KVVKNK+A PFK+ EFDIMYGEGIS  GE++DL     IV++SGAW+++ G+RLGQGR
Sbjct: 258 RCKVVKNKVAPPFKEAEFDIMYGEGISQTGEILDLATNLDIVNRSGAWYNYNGERLGQGR 317

Query: 311 ENSKIFLRENIEIAENIESLLRQN 334
           +N+K +L EN E+ E +  L+ +N
Sbjct: 318 DNAKAYLAENPELCEELRKLVMEN 341


>gi|47571268|gb|AAT35791.1| RecA [Mycobacterium simiae]
          Length = 321

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 203/318 (63%), Positives = 262/318 (82%), Gaps = 2/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 3   DREKALELAMAQIEKSYGKGSVMRLGDE--MRQPISVIPTGSIALDVALGIGGLPRGRVV 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 61  EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 121 EQALEIADMLIRSGALDILVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+T
Sbjct: 181 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNRT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG GIS  G LID+GV    + KSG+WF+++G++LGQG+
Sbjct: 241 RVKVVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGSWFTYEGEQLGQGK 300

Query: 311 ENSKIFLRENIEIAENIE 328
           EN + FL EN +IA  IE
Sbjct: 301 ENVRNFLMENADIANEIE 318


>gi|71089178|gb|AAZ23667.1| RecA [uncultured Burkholderia sp.]
 gi|71089180|gb|AAZ23668.1| RecA [uncultured Burkholderia sp.]
 gi|71089182|gb|AAZ23669.1| RecA [uncultured Burkholderia sp.]
          Length = 288

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/289 (71%), Positives = 252/289 (87%), Gaps = 1/289 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGD-AEAKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAEMQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G ++GQG++
Sbjct: 240 FRESIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGDKIGQGKD 288


>gi|297584104|ref|YP_003699884.1| recA protein [Bacillus selenitireducens MLS10]
 gi|297142561|gb|ADH99318.1| recA protein [Bacillus selenitireducens MLS10]
          Length = 352

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/337 (60%), Positives = 270/337 (80%), Gaps = 2/337 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ +AL+ AL QI++ +GKG+IM+LG Q    + +  +SSG L LDIALG+GG+P+GR++
Sbjct: 3   DRKQALDMALKQIEKQFGKGSIMKLGEQAE--QRVSTISSGVLALDIALGVGGYPRGRVI 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ Q+ GGT AF+DAEHALD  YA+ LGVD+ NLL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVALHAIAEVQRNGGTAAFIDAEHALDPKYAQALGVDIDNLLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVD+IV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ ++
Sbjct: 121 EQALEIAEALVRSGAVDMIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAV 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR  ++K  + + GN+T
Sbjct: 181 SKSKTIAMFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMIGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYGEGIS  G ++D+     IV KSGAW+S+ G R+GQGR
Sbjct: 241 KLKVVKNKVAPPFKTAEVDIMYGEGISREGSILDIASDLDIVQKSGAWYSYDGDRMGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           EN+K FL+EN E++  I+  +R++ GL+    +  PA
Sbjct: 301 ENAKQFLKENDEVSSEIDRKIREHHGLLDVQDVPAPA 337


>gi|260881781|ref|ZP_05405213.2| protein RecA [Mitsuokella multacida DSM 20544]
 gi|260847875|gb|EEX67882.1| protein RecA [Mitsuokella multacida DSM 20544]
          Length = 370

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/321 (64%), Positives = 261/321 (81%), Gaps = 1/321 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K +ALE AL +I++ +GKG+IM+LG   +  + IEV+ +G L LDIALG+GG P+GRI+E
Sbjct: 17  KQEALENALKKIEKDFGKGSIMRLGDAKAHMD-IEVIPTGILPLDIALGVGGIPRGRIIE 75

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTT+ LH IA++QK GG  AF+DAEHALD +YA KLGV++ +LLISQPDTGE
Sbjct: 76  VYGPESSGKTTVTLHMIAEAQKNGGIAAFIDAEHALDPVYAAKLGVNIDDLLISQPDTGE 135

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL+I D LVRSGA+DIIV+DSVAAL P+AEIEGDMG+S  G+QARLMSQA+RKLT  I+
Sbjct: 136 QALDIVDALVRSGAIDIIVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQAMRKLTGIIA 195

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S+   +FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+R++ +IK    + GN+TR
Sbjct: 196 KSRTAAIFINQIREKVGVMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGQDVIGNRTR 255

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           +KVVKNK+A PF+  EFDIMYGEG+S    +ID+GV   IVDKSGAWFS+ G RLGQG+E
Sbjct: 256 IKVVKNKVAPPFRTAEFDIMYGEGVSRLSSIIDMGVDLDIVDKSGAWFSYNGTRLGQGKE 315

Query: 312 NSKIFLRENIEIAENIESLLR 332
           N+K  LR+   I E IE+ +R
Sbjct: 316 NAKQSLRDQPAICEEIEAKIR 336


>gi|308173657|ref|YP_003920362.1| multifunctional SOS repair factor [Bacillus amyloliquefaciens DSM
           7]
 gi|25004791|emb|CAD56687.1| RecA protein [Bacillus amyloliquefaciens]
 gi|307606521|emb|CBI42892.1| multifunctional SOS repair factor [Bacillus amyloliquefaciens DSM
           7]
 gi|328553411|gb|AEB23903.1| recombinase A [Bacillus amyloliquefaciens TA208]
 gi|328911797|gb|AEB63393.1| Protein recA [Bacillus amyloliquefaciens LL3]
          Length = 347

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/327 (63%), Positives = 266/327 (81%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG +      I  V SGSL LD ALGIGG+P+GRI+
Sbjct: 3   DRQAALDMALKQIEKQFGKGSIMKLGEKTDTR--ISTVPSGSLALDTALGIGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ Q+ GG  AF+DAEHALD +YA+KLGV+++ LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVALHAIAEVQEKGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDI+V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K  + + GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PF+  E DIMYGEGIS  GE+IDLG +  IV KSG+W+S++ +RLGQGR
Sbjct: 241 RIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K FL+EN +I   I+  +R++ GL
Sbjct: 301 ENAKQFLKENKDIMLMIQEQIREHYGL 327


>gi|295103957|emb|CBL01501.1| RecA protein [Faecalibacterium prausnitzii SL3/3]
          Length = 391

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/325 (63%), Positives = 261/325 (80%), Gaps = 3/325 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K  AL  AL+QI++ +GKGA+M+LG   S+   ++ +S+GSLGLD+ALG+GG P+GRI+E
Sbjct: 21  KKDALATALAQIEKQFGKGAVMKLGDNASM--QVDAISTGSLGLDLALGVGGVPRGRIIE 78

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTLALH +A++QK GG  AF+D EHALD  YA  LGVD+ NLL+SQPDTGE
Sbjct: 79  VYGPESSGKTTLALHILAEAQKKGGEVAFIDVEHALDPTYAEALGVDINNLLVSQPDTGE 138

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QA+EI + LVRSGA+D IV+DSVAA+ PRAEIEG+MG+S  G+QARLMSQA+RKLTS I 
Sbjct: 139 QAMEICEALVRSGAIDAIVVDSVAAMVPRAEIEGEMGDSHVGLQARLMSQAMRKLTSVIG 198

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQT 250
           ++  + VFINQ+R K+GVM+G+PE TTGG ALK+Y+SVR+DIRRV  +KD      GN T
Sbjct: 199 KTNTVCVFINQLREKVGVMYGNPEVTTGGRALKYYASVRIDIRRVEGLKDSSGQFIGNHT 258

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R K+VKNK+A PF++ EFDIM+GEGIS   ELID+GVK  IV KSGAWF++   RLGQGR
Sbjct: 259 RAKIVKNKVAPPFREAEFDIMFGEGISKMSELIDVGVKLGIVQKSGAWFNYGDIRLGQGR 318

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
           +N+K FL++N EIA +IE  +R NA
Sbjct: 319 DNAKQFLKDNPEIANDIEGQIRANA 343


>gi|56708748|ref|YP_170644.1| recombinase A [Francisella tularensis subsp. tularensis SCHU S4]
 gi|89255461|ref|YP_512822.1| recombinase A [Francisella tularensis subsp. holarctica LVS]
 gi|110671220|ref|YP_667777.1| recombinase A [Francisella tularensis subsp. tularensis FSC198]
 gi|115313990|ref|YP_762713.1| recombinase A [Francisella tularensis subsp. holarctica OSU18]
 gi|134302775|ref|YP_001122743.1| recombinase A [Francisella tularensis subsp. tularensis WY96-3418]
 gi|156501383|ref|YP_001427448.1| recombinase A [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|167009297|ref|ZP_02274228.1| RecA protein [Francisella tularensis subsp. holarctica FSC200]
 gi|187932296|ref|YP_001892281.1| recombinase A [Francisella tularensis subsp. mediasiatica FSC147]
 gi|224457954|ref|ZP_03666427.1| recombinase A [Francisella tularensis subsp. tularensis MA00-2987]
 gi|254366869|ref|ZP_04982907.1| recombinase A protein [Francisella tularensis subsp. holarctica
           257]
 gi|254368442|ref|ZP_04984459.1| recombinase A protein [Francisella tularensis subsp. holarctica
           FSC022]
 gi|254371359|ref|ZP_04987360.1| recombinase A protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875611|ref|ZP_05248321.1| recombination protein RecA [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|290953099|ref|ZP_06557720.1| recombinase A [Francisella tularensis subsp. holarctica URFT1]
 gi|295313685|ref|ZP_06804268.1| recombinase A [Francisella tularensis subsp. holarctica URFT1]
 gi|76363331|sp|Q5NE98|RECA_FRATT RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|122325945|sp|Q0BPA8|RECA_FRATO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123094555|sp|Q2A629|RECA_FRATH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123359336|sp|Q14FQ1|RECA_FRAT1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166220645|sp|A7N939|RECA_FRATF RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166220647|sp|A4J0C1|RECA_FRATW RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238691520|sp|B2SEE2|RECA_FRATM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|56605240|emb|CAG46383.1| Recombinase A protein [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|89143292|emb|CAJ78453.1| Recombinase A protein [Francisella tularensis subsp. holarctica
           LVS]
 gi|110321553|emb|CAL09766.1| Recombinase A protein [Francisella tularensis subsp. tularensis
           FSC198]
 gi|115128889|gb|ABI82076.1| recombination protein RecA [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134050552|gb|ABO47623.1| Recombinase A [Francisella tularensis subsp. tularensis WY96-3418]
 gi|134252697|gb|EBA51791.1| recombinase A protein [Francisella tularensis subsp. holarctica
           257]
 gi|151569598|gb|EDN35252.1| recombinase A protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|156251986|gb|ABU60492.1| Recombinase A [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|157121336|gb|EDO65537.1| recombinase A protein [Francisella tularensis subsp. holarctica
           FSC022]
 gi|187713205|gb|ACD31502.1| recombinase A protein RecA [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|254841610|gb|EET20046.1| recombination protein RecA [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282160069|gb|ADA79460.1| RecA protein [Francisella tularensis subsp. tularensis NE061598]
          Length = 359

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/317 (68%), Positives = 270/317 (85%), Gaps = 1/317 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KALE+ALSQI++ +GKGAIM+LG Q +  + I+V+ SG + LD+ALGIGG+PKGRI+E
Sbjct: 3   KEKALESALSQIEKQFGKGAIMRLGDQEAAHD-IDVIPSGIIALDVALGIGGYPKGRIIE 61

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYG ESSGKTTL L  IAQ QK GGT AFVDAEHALD  YA+ LGVD+ NL++SQPDTGE
Sbjct: 62  IYGHESSGKTTLTLLAIAQCQKQGGTAAFVDAEHALDPKYAKLLGVDVDNLIVSQPDTGE 121

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DMLVRSG VDI+VIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT++I 
Sbjct: 122 QALEIADMLVRSGGVDIVVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIK 181

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           RS  +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRL++++ GSIKD   ++GN+ +
Sbjct: 182 RSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLEVKKGGSIKDGIDVSGNEIK 241

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PFKQ +F+++YGEGIS   ELIDLG K +I++KSGAW+S+KG+++GQG+E
Sbjct: 242 VKVVKNKVAPPFKQADFELIYGEGISLEAELIDLGAKYNIIEKSGAWYSYKGKKIGQGKE 301

Query: 312 NSKIFLRENIEIAENIE 328
            SK +L+EN    + IE
Sbjct: 302 KSKEYLKENTAERDEIE 318


>gi|313112840|ref|ZP_07798487.1| protein RecA [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624910|gb|EFQ08218.1| protein RecA [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 393

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/325 (63%), Positives = 261/325 (80%), Gaps = 3/325 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K  AL  AL+QI++ +GKGA+M+LG   S+   ++ +S+GSLGLD+ALG+GG P+GRI+E
Sbjct: 22  KKDALATALAQIEKQFGKGAVMKLGDNASM--QVDAISTGSLGLDLALGVGGVPRGRIIE 79

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTLALH +A++QK GG  AF+D EHALD  YA  LGVD+ NLL+SQPDTGE
Sbjct: 80  VYGPESSGKTTLALHILAEAQKQGGEVAFIDVEHALDPTYAEALGVDINNLLVSQPDTGE 139

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QA+EI + LVRSGA+D IV+DSVAA+ PRAEIEG+MG+S  G+QARLMSQA+RKLTS I 
Sbjct: 140 QAMEICEALVRSGAIDAIVVDSVAAMVPRAEIEGEMGDSHVGLQARLMSQAMRKLTSVIG 199

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQT 250
           ++  + VFINQ+R K+GVM+G+PE TTGG ALK+Y+SVR+DIRRV  +KD      GN T
Sbjct: 200 KTNTVCVFINQLREKVGVMYGNPEVTTGGRALKYYASVRIDIRRVEGLKDSSGQFIGNHT 259

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R K+VKNK+A PF++ EFDIM+GEGIS   ELID+GVK  IV KSGAWF++   RLGQGR
Sbjct: 260 RAKIVKNKVAPPFREAEFDIMFGEGISKMSELIDVGVKLGIVQKSGAWFNYGDIRLGQGR 319

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
           +N+K FL++N EIA +IE  +R NA
Sbjct: 320 DNAKQFLKDNPEIANDIEGQIRANA 344


>gi|330850717|gb|AEC46661.1| RecA [Propionibacterium acnes]
          Length = 341

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/327 (63%), Positives = 261/327 (79%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL  AL QI++ +GKG+IM+LG Q ++   I  + +GS+ LD+ALG+GG P+GRIV
Sbjct: 6   DREKALATALQQIEKQHGKGSIMRLGEQETV--KIAAIPTGSVALDVALGVGGLPRGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA +Q  GG CAF+DAEHALD  YA KLGVD  +LL+SQPD G
Sbjct: 64  EIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPEYAHKLGVDTDSLLVSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGA+++IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADTLVRSGALELIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + +    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RRV ++KD   + GN+T
Sbjct: 184 NAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRVETLKDGSEMVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV KNK+A PFKQ EFDI+YG+GIS  G LID+GV   I+ KSG+WFS+  ++LGQG+
Sbjct: 244 RVKVAKNKVAPPFKQAEFDILYGQGISREGSLIDMGVDCGIITKSGSWFSYNNEQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN + FLR N ++A  IE  +  + GL
Sbjct: 304 ENVRKFLRGNPDVANEIEDKILTHLGL 330


>gi|257068236|ref|YP_003154491.1| recombination protein RecA [Brachybacterium faecium DSM 4810]
 gi|256559054|gb|ACU84901.1| protein RecA [Brachybacterium faecium DSM 4810]
          Length = 368

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 209/327 (63%), Positives = 263/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  +L+ AL+QI R +GKG+IM+LG        +EV+ +GS+ LD ALG+GG P+GRIV
Sbjct: 14  DRGSSLDNALAQIDRQFGKGSIMRLGDD--TRPPVEVIPTGSVALDAALGVGGLPRGRIV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH +A +Q+ GG  AF+DAEHA+D  YA+KLGVD   LL+SQPDTG
Sbjct: 72  EIYGPESSGKTTLALHAVANAQRNGGIAAFIDAEHAMDPEYAKKLGVDTDALLVSQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDML+RSGA+DI+VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT ++
Sbjct: 132 EQALEITDMLIRSGALDIVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGAL 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S S    +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+DIRR+ ++K      GN+T
Sbjct: 192 SSSGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRMDIRRIETLKAGTDSVGNRT 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFKQ EFDI+YGEGIS  G L+DLGV+  +V KSGAWF+++G +LGQG+
Sbjct: 252 RVKVVKNKMAPPFKQAEFDILYGEGISREGGLLDLGVEHGVVRKSGAWFTYEGDQLGQGK 311

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           ENS+ FL++N ++A  IE  + +  G+
Sbjct: 312 ENSRQFLKDNPDLAAEIEEKILRTLGV 338


>gi|257440233|ref|ZP_05615988.1| protein RecA [Faecalibacterium prausnitzii A2-165]
 gi|257197267|gb|EEU95551.1| protein RecA [Faecalibacterium prausnitzii A2-165]
          Length = 400

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/325 (62%), Positives = 262/325 (80%), Gaps = 3/325 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K  AL  AL+QI++ +GKGA+M+LG   ++   ++ +S+GS+GLD+ALG+GG P+GRI+E
Sbjct: 28  KKDALATALAQIEKQFGKGAVMKLGDNAAM--QVDAISTGSIGLDLALGVGGVPRGRIIE 85

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTLALH +A++QK GG  AF+D EHALD +YA  LGVD+ NLL+SQPDTGE
Sbjct: 86  VYGPESSGKTTLALHVLAEAQKKGGDVAFIDVEHALDPVYAEALGVDINNLLVSQPDTGE 145

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QA+EI + LVRSGA+D IV+DSVAA+ PRAEIEG+MG+S  G+QARLMSQA+RKLTS I 
Sbjct: 146 QAMEICEALVRSGAIDAIVVDSVAAMVPRAEIEGEMGDSHVGLQARLMSQAMRKLTSVIG 205

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQT 250
           ++  + +FINQ+R K+GV++G+PE TTGG ALK+YSSVR+DIRRV  +KD      GN T
Sbjct: 206 KTNTVCIFINQLREKVGVVYGNPEVTTGGRALKYYSSVRIDIRRVEGLKDSSGQFIGNHT 265

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R K+VKNK+A PF++ EFDIM+GEGIS   ELIDLGVK  IV KSGAWF++   RLGQGR
Sbjct: 266 RAKIVKNKVAPPFREAEFDIMFGEGISKMSELIDLGVKLGIVQKSGAWFNYGDIRLGQGR 325

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
           +N+K FLR+N EIA +IE  +R NA
Sbjct: 326 DNAKQFLRDNPEIANDIEGQVRANA 350


>gi|206602303|gb|EDZ38784.1| RecA protein [Leptospirillum sp. Group II '5-way CG']
          Length = 360

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/321 (64%), Positives = 267/321 (83%), Gaps = 1/321 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + K+L+ ALSQI++ +GKG+IM+LG +  + + + V+ SGSL LDIALGIGG+P+GR+VE
Sbjct: 9   RQKSLDLALSQIEKQFGKGSIMRLG-KDQVPQIVPVIPSGSLALDIALGIGGYPRGRVVE 67

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTLALH I++  K GG  AF+DAEHALD  YA++LGV  ++LLI+QPDTGE
Sbjct: 68  LYGPESSGKTTLALHAISEVHKAGGVAAFIDAEHALDVTYAKRLGVRTEDLLIAQPDTGE 127

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEIT+ LVRSG++D+IV+DSVAAL PRAE+EG+MG++  G+QARLMSQALRKLTS+IS
Sbjct: 128 QALEITETLVRSGSIDLIVVDSVAALVPRAELEGEMGDAHVGLQARLMSQALRKLTSAIS 187

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S   ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIRR+ SIK+ D + GN+ R
Sbjct: 188 KSNTTVLFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRRIESIKEGDQVLGNRIR 247

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNKMA PF+Q EFDI + EGIS  GELIDLGV   I++KSGAW+S   +RLGQG+E
Sbjct: 248 VKVVKNKMAPPFRQAEFDISFNEGISTVGELIDLGVDNGILEKSGAWYSMGSERLGQGKE 307

Query: 312 NSKIFLRENIEIAENIESLLR 332
             K++L+ + +  + IE  +R
Sbjct: 308 AVKLYLKNHPDAFKKIEQEIR 328


>gi|311030057|ref|ZP_07708147.1| recombinase A [Bacillus sp. m3-13]
          Length = 346

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 213/350 (60%), Positives = 273/350 (78%), Gaps = 7/350 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG Q      I  + SGSL LD+ALG GG+P+GR+V
Sbjct: 3   DRKAALDMALKQIEKQFGKGSIMKLGEQTE--RKISTIPSGSLALDVALGAGGYPRGRVV 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ Q+ GG  AF+DAEHALD +YA+KLGV++  LL+SQPDTG
Sbjct: 61  EIYGPESSGKTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDIIV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGHDIVGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYGEGIS  GE+ID+G    IV KSG+W+S+  +RLGQGR
Sbjct: 241 KIKVVKNKIAPPFKVAEVDIMYGEGISREGEVIDMGSDLDIVQKSGSWYSYNEERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           EN+K FL+EN +I + I   +R + GL  D  L  PA   +++ D+++ D
Sbjct: 301 ENAKQFLKENKDILKEIHQQIRDHHGL--DKDLTAPA---EEEMDQEELD 345


>gi|296393357|ref|YP_003658241.1| recA protein [Segniliparus rotundus DSM 44985]
 gi|296180504|gb|ADG97410.1| recA protein [Segniliparus rotundus DSM 44985]
          Length = 346

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/323 (64%), Positives = 263/323 (81%), Gaps = 2/323 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +D++KALE ALSQI + +GKG++M+LG Q S  + I V+ +GS+ LD+ALGIGG PKGR+
Sbjct: 5   LDRNKALELALSQIDKSFGKGSVMRLGDQAS--QPIAVIPTGSIALDVALGIGGLPKGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD +NLL+SQPDT
Sbjct: 63  IEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTENLLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 123 GEQALEIADMLIRSGALDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFG  ETTTGG ALKFY+SVRLD+RR+ ++KD      N+
Sbjct: 183 LNNSGTTAIFINQLREKIGVMFGPTETTTGGKALKFYASVRLDVRRIETLKDGTEAVANR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVK+VKNK+A PFKQ EFDI+YG GIS  G +IDLGV+  ++ KSGAW+++  ++LGQG
Sbjct: 243 TRVKIVKNKVAPPFKQAEFDIIYGAGISREGSIIDLGVEHGLIRKSGAWYTYGDEQLGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLR 332
           +EN++ FL  N + AE IE LLR
Sbjct: 303 KENARKFLIANPDKAEEIEMLLR 325


>gi|83816684|ref|YP_445653.1| recA protein [Salinibacter ruber DSM 13855]
 gi|294507545|ref|YP_003571603.1| RecA protein [Salinibacter ruber M8]
 gi|83758078|gb|ABC46191.1| recA protein [Salinibacter ruber DSM 13855]
 gi|294343873|emb|CBH24651.1| RecA protein [Salinibacter ruber M8]
          Length = 353

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/326 (63%), Positives = 262/326 (80%), Gaps = 2/326 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+ A+ QIQR +G+GAIM+L    +  + +E + +GSL LD ALGIGG P+GRI E
Sbjct: 9   KEKALDLAVEQIQRDHGEGAIMRLSDDPN--QEVEAIPTGSLALDDALGIGGVPRGRITE 66

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPESSGKTTLA H +A++QK GGTCAFVDAEHA D  YA +LGVD   LLISQPDTGE
Sbjct: 67  IFGPESSGKTTLAAHVVAEAQKLGGTCAFVDAEHAFDPNYAEQLGVDTDELLISQPDTGE 126

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL ITD LVRSGA+D+IVIDSV+AL P+AE+EGDMG++  G+QARLMSQALRKL  +I+
Sbjct: 127 QALNITDTLVRSGALDVIVIDSVSALVPQAELEGDMGDTHVGLQARLMSQALRKLAGTIN 186

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           R+K  L+FINQ+RMKIGVMFG+PETT+GG ALKFYSSVR+DIRR+G++KD   + GN+TR
Sbjct: 187 RTKTALIFINQIRMKIGVMFGNPETTSGGRALKFYSSVRMDIRRIGAVKDGQDVVGNRTR 246

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV KNK+A PFK+ EFD++YGEGIS  GE+IDLG +  I+ K G+W+S++ + + QGRE
Sbjct: 247 VKVKKNKVAPPFKEAEFDLIYGEGISSLGEIIDLGTEYDILQKRGSWYSYQDETIAQGRE 306

Query: 312 NSKIFLRENIEIAENIESLLRQNAGL 337
           N+K +L EN E  + I+S LR   GL
Sbjct: 307 NTKEWLEENDEQRDEIKSALRGEIGL 332


>gi|160942862|ref|ZP_02090101.1| hypothetical protein FAEPRAM212_00338 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445763|gb|EDP22766.1| hypothetical protein FAEPRAM212_00338 [Faecalibacterium prausnitzii
           M21/2]
          Length = 391

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/325 (63%), Positives = 261/325 (80%), Gaps = 3/325 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K  AL  AL+QI++ +GKGA+M+LG   S+   ++ +S+GSLGLD+ALG+GG P+GRI+E
Sbjct: 21  KKDALATALAQIEKQFGKGAVMKLGDNASM--QVDAISTGSLGLDLALGVGGVPRGRIIE 78

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTLALH +A++QK GG  AF+D EHALD  YA  LGVD+ NLL+SQPDTGE
Sbjct: 79  VYGPESSGKTTLALHILAEAQKKGGEVAFIDVEHALDPTYAEALGVDINNLLVSQPDTGE 138

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QA+EI + LVRSGA+D IV+DSVAA+ PRAEIEG+MG+S  G+QARLMSQA+RKLTS I 
Sbjct: 139 QAMEICEALVRSGAIDAIVVDSVAAMVPRAEIEGEMGDSHVGLQARLMSQAMRKLTSVIG 198

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQT 250
           ++  + VFINQ+R K+GVM+G+PE TTGG ALK+Y+SVR+DIRRV  +KD      GN T
Sbjct: 199 KTNTVCVFINQLREKVGVMYGNPEVTTGGRALKYYASVRIDIRRVEGLKDSSGQFIGNHT 258

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R K+VKNK+A PF++ EFDIM+GEGIS   ELID+GVK  IV KSGAWF++   RLGQGR
Sbjct: 259 RAKIVKNKVAPPFREAEFDIMFGEGISKMSELIDVGVKLGIVQKSGAWFNYGDIRLGQGR 318

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
           +N+K FL++N EIA +IE  +R NA
Sbjct: 319 DNAKQFLKDNPEIANDIEGQIRANA 343


>gi|296139499|ref|YP_003646742.1| recA protein [Tsukamurella paurometabola DSM 20162]
 gi|296027633|gb|ADG78403.1| recA protein [Tsukamurella paurometabola DSM 20162]
          Length = 350

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/330 (62%), Positives = 266/330 (80%), Gaps = 2/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE AL+QI + YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 7   DREKALELALAQIDKNYGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A++Q  GG  AF+DAEHALD  YA KLGVD   LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVAEAQANGGIAAFIDAEHALDPDYAAKLGVDTDALLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLIRSGALDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGAM 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+T
Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG+GIS  G +ID+GV    + KSG+W+++ G +LGQG+
Sbjct: 245 RVKVVKNKVSPPFKQAEFDIIYGQGISREGSIIDMGVNEGFIRKSGSWYTYDGDQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           EN++ FL EN ++ + IE  +++  G+ AD
Sbjct: 305 ENARKFLLENPDVRDEIEKRIKEKLGVGAD 334


>gi|30249884|ref|NP_841954.1| recombinase A [Nitrosomonas europaea ATCC 19718]
 gi|37537928|sp|Q82TF6|RECA_NITEU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|30180921|emb|CAD85843.1| RecA bacterial DNA recombination protein:AAA ATPase superfamily
           [Nitrosomonas europaea ATCC 19718]
          Length = 343

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 218/338 (64%), Positives = 282/338 (83%), Gaps = 2/338 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K+KAL AAL+QI++ YGKG+IM+LG    + + I+VVS+GSLGLDIALG+GG P+GRI+
Sbjct: 4   NKNKALSAALAQIEKQYGKGSIMRLGDS-DVAKDIQVVSTGSLGLDIALGVGGLPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA+K+GV+++ LLISQPD G
Sbjct: 63  EIYGPESSGKTTLTLQAIAEMQKLGGTAAFIDAEHALDPQYAQKIGVNVQELLISQPDNG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSG+VD++V+DSVAALTPRAEIEG+MGE   G+QARLMSQALRKLT++I
Sbjct: 123 EQALEITDMLVRSGSVDVVVVDSVAALTPRAEIEGEMGEPQMGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+  +++FINQ+RMKIGV+FG+PETTTGGNALKFY+SVRLDIRR GSIK  + + GN+T
Sbjct: 183 KRTNTMVIFINQIRMKIGVIFGNPETTTGGNALKFYASVRLDIRRTGSIKRGEEMVGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFKQ +FDI+YGEGIS   E+I+LGV   +++K+GAW+S+ G+++GQG+
Sbjct: 243 RVKIVKNKVAPPFKQADFDILYGEGISRESEIIELGVLHKLIEKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV-ADSLLQEPA 347
           +N + +L+E+  IA  IE  +R   GL   DS +  P+
Sbjct: 303 DNVRDYLKEHKSIAHEIEQKIRAAVGLAETDSRVVPPS 340


>gi|307244353|ref|ZP_07526466.1| protein RecA [Peptostreptococcus stomatis DSM 17678]
 gi|306492254|gb|EFM64294.1| protein RecA [Peptostreptococcus stomatis DSM 17678]
          Length = 349

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 201/332 (60%), Positives = 269/332 (81%), Gaps = 2/332 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL  AL +I++ +GKG++M+LG    +   ++ + +G +GLDIA G+GG P+GRI+
Sbjct: 6   NKMEALNEALKKIEKEHGKGSVMKLGETTGL--DVDSIPTGVIGLDIAAGVGGLPRGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ LH IA++QK  G  AF+DAEHALD +YAR LGVD+ NL+ISQPDTG
Sbjct: 64  EVYGPESSGKTTVTLHCIAEAQKRNGIAAFIDAEHALDPVYARSLGVDVDNLIISQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL+I + L+RSGA+DI+VIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT SI
Sbjct: 124 EQALDIAESLIRSGAIDILVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGSI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+++FINQ+R K+GVMFG+PETTTGG ALKF+S++R+++RRV SIK  D I GN+T
Sbjct: 184 KKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFFSTMRIEVRRVDSIKQGDKILGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+K+VKNK+A PFKQ+EFDIMYG GIS  G+L+D+ V   ++ K+GAW+S+  +++GQGR
Sbjct: 244 RIKIVKNKVAPPFKQIEFDIMYGTGISKSGDLLDVAVGIDVIKKAGAWYSYNDEKMGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL 342
           ENSK FL EN +IA  IE+ +R+  GL  D +
Sbjct: 304 ENSKNFLEENEDIAAEIEAKVREYYGLPIDGV 335


>gi|226366160|ref|YP_002783943.1| recombinase A [Rhodococcus opacus B4]
 gi|254790443|sp|C1B381|RECA_RHOOB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226244650|dbj|BAH54998.1| RecA protein [Rhodococcus opacus B4]
          Length = 348

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/327 (62%), Positives = 265/327 (81%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+ AL+QI + +GKG++M+LG    + + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 7   DRDKALDLALAQIDKNFGKGSVMRLGE--GVRQPIAVIPTGSISLDVALGIGGLPRGRVV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD   LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAQKLGVDTDALLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLIRSGALDILVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD     GN+T
Sbjct: 185 SNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+W++++G +LGQG+
Sbjct: 245 RVKVVKNKVAPPFKQAEFDILYGQGISKEGSLIDMGVEHGFIRKSGSWYTYEGDQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN++ FL EN +I + IE  +++  G+
Sbjct: 305 ENARKFLLENTDIRDEIEKKIKEKLGI 331


>gi|309811276|ref|ZP_07705065.1| RecA protein [Dermacoccus sp. Ellin185]
 gi|308434758|gb|EFP58601.1| RecA protein [Dermacoccus sp. Ellin185]
          Length = 364

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 201/330 (60%), Positives = 268/330 (81%), Gaps = 2/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK K+L+  ++QI++ +GKG+IM+LG    +   IEV+ + S+ LD+ALGIGG P+GR+V
Sbjct: 15  DKIKSLDTVMAQIEKAHGKGSIMRLGE--DVRPPIEVIPTSSIALDVALGIGGLPRGRVV 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +QK GG  AF+DAEHALD  YARKLGVD  +LL+SQPDTG
Sbjct: 73  EIYGPESSGKTTVALHAVANAQKAGGIAAFIDAEHALDPEYARKLGVDTDSLLVSQPDTG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSG++DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 133 EQALEIADMLIRSGSLDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGAL 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+T
Sbjct: 193 NSTGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRIDVRRIETLKDGSEPVGNRT 252

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R K+VKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V KSGAW++++G +LGQG+
Sbjct: 253 RAKIVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEQGFVRKSGAWYTYEGDQLGQGK 312

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           EN++ FL++N ++ + +E  +++  G++ D
Sbjct: 313 ENARTFLKDNPQLTDELELKIKKKLGIIPD 342


>gi|118496737|ref|YP_897787.1| recombinase A protein [Francisella tularensis subsp. novicida U112]
 gi|194324044|ref|ZP_03057819.1| RecA protein [Francisella tularensis subsp. novicida FTE]
 gi|208779992|ref|ZP_03247335.1| RecA protein [Francisella novicida FTG]
 gi|254372103|ref|ZP_04987596.1| hypothetical protein FTCG_01244 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|166220646|sp|A0Q468|RECA_FRATN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|118422643|gb|ABK89033.1| recombinase A protein [Francisella novicida U112]
 gi|151569834|gb|EDN35488.1| hypothetical protein FTCG_01244 [Francisella novicida GA99-3549]
 gi|194321941|gb|EDX19424.1| RecA protein [Francisella tularensis subsp. novicida FTE]
 gi|208743996|gb|EDZ90297.1| RecA protein [Francisella novicida FTG]
 gi|328676192|gb|AEB27062.1| RecA protein [Francisella cf. novicida Fx1]
          Length = 359

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 221/327 (67%), Positives = 273/327 (83%), Gaps = 5/327 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KALE+ALSQI++ +GKGAIM+LG Q +  + I+V+ SG + LD+ALGIGG+PKGRI+E
Sbjct: 3   KEKALESALSQIEKQFGKGAIMRLGDQEAAHD-IDVIPSGIIALDVALGIGGYPKGRIIE 61

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYG ESSGKTTL L  IAQ QK GGT AFVDAEHALD  YA+ LGVD+ NL++SQPDTGE
Sbjct: 62  IYGHESSGKTTLTLLAIAQCQKQGGTAAFVDAEHALDPKYAKLLGVDVDNLIVSQPDTGE 121

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DMLVRSG VDI+VIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT++I 
Sbjct: 122 QALEIADMLVRSGGVDIVVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIK 181

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           RS  +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRL++++ GSIKD   ++GN+ +
Sbjct: 182 RSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLEVKKGGSIKDGIDVSGNEIK 241

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PFKQ +F+++YGEGIS   ELIDLG K +I++KSGAW+S+KG+++GQG+E
Sbjct: 242 VKVVKNKVAPPFKQADFELIYGEGISLEAELIDLGAKYNIIEKSGAWYSYKGKKIGQGKE 301

Query: 312 NSKIFLRENI----EIAENIESLLRQN 334
            SK +L+EN     EI   I  LL  N
Sbjct: 302 KSKEYLKENTAERDEIERAILELLLPN 328


>gi|19553160|ref|NP_601162.1| recombinase A [Corynebacterium glutamicum ATCC 13032]
 gi|62390795|ref|YP_226197.1| recombinase A [Corynebacterium glutamicum ATCC 13032]
 gi|145295860|ref|YP_001138681.1| recombinase A [Corynebacterium glutamicum R]
 gi|1172882|sp|P42442|RECA_CORGL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166220641|sp|A4QEW3|RECA_CORGB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|556616|gb|AAD12743.1| RecA [Corynebacterium glutamicum]
 gi|21324725|dbj|BAB99348.1| RecA/RadA recombinase [Corynebacterium glutamicum ATCC 13032]
 gi|41326133|emb|CAF20296.1| DNA RECOMBINATION/REPAIR [Corynebacterium glutamicum ATCC 13032]
 gi|140845780|dbj|BAF54779.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 376

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/358 (60%), Positives = 275/358 (76%), Gaps = 8/358 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+AAL+ I++ +GKGA+M+LG +      I+ +SSG+  +DIALGIGGFP+GRIV
Sbjct: 17  DRQKALDAALALIEKDFGKGAVMRLGDENR--PPIQTISSGNTAIDIALGIGGFPRGRIV 74

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IAQ+QK GG  AF+DAEHALD  YARKLGVD   LL+SQPDTG
Sbjct: 75  EVYGPESSGKTTVALHAIAQAQKAGGIAAFIDAEHALDPDYARKLGVDTDALLVSQPDTG 134

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DIIVIDSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 135 EQALEIADMLVRSGAIDIIVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 194

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR DIRR+ ++KD     GN+T
Sbjct: 195 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRIQTLKDGQDAIGNRT 254

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK++ PFK  EFDIMYGEGIS    +IDL V   IV KSG+WF+++G++LGQG+
Sbjct: 255 RLKVVKNKVSPPFKIAEFDIMYGEGISRESSVIDLAVDNGIVKKSGSWFTYEGEQLGQGK 314

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL-----VADSLLQEPAINTKDDADKDDTDNVE 363
           E  ++ L+EN E+ + +E  + +  G+      +D L  +P +    + D DD  + E
Sbjct: 315 EKVRLSLKENPELTDELEDKIFKKLGVGKYAAASDELTDDP-VELVPNVDFDDEADTE 371


>gi|42416893|gb|AAS16328.1| RecA [Mycobacterium mucogenicum]
          Length = 350

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/343 (60%), Positives = 268/343 (78%), Gaps = 9/343 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE AL+QI + +GKG++M+LG +    + I  + +GS+ LD+ALGIGG P+GR++
Sbjct: 7   DREKALELALAQIDKSFGKGSVMRLGEETR--QPISDIPTGSIALDVALGIGGLPRGRVI 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD   LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLVRSGAMDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+T
Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFKQ EFDI+YG GIS  G LID+GV+   + KSG+WF++ G++LGQG+
Sbjct: 245 RVKIVKNKVAPPFKQAEFDILYGRGISREGSLIDMGVEHGFIRKSGSWFTYDGEQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL-------VADSLLQEP 346
           EN++ FL EN++ A  IE  +++  G+        AD +L  P
Sbjct: 305 ENARNFLLENVDAANEIEKKIKEKLGIGAVLTDGAADDVLPAP 347


>gi|475064|emb|CAA54563.1| recA [Corynebacterium glutamicum]
          Length = 376

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/358 (60%), Positives = 275/358 (76%), Gaps = 8/358 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+AAL+ I++ +GKGA+M+LG +      I+ +SSG+  +DIALGIGGFP+GRIV
Sbjct: 17  DRQKALDAALALIEKDFGKGAVMRLGDENR--PPIQTISSGNTAIDIALGIGGFPRGRIV 74

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IAQ+QK GG  AF+DAEHALD  YARKLGVD   LL+SQPDTG
Sbjct: 75  EVYGPESSGKTTVALHAIAQAQKAGGIAAFIDAEHALDPDYARKLGVDTDALLVSQPDTG 134

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DIIVIDSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 135 EQALEIADMLVRSGAIDIIVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 194

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR DIRR+ ++KD     GN+T
Sbjct: 195 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRIQTLKDGQDAIGNRT 254

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK++ PFK  EFDIMYGEGIS    +IDL V   IV KSG+WF+++G++LGQG+
Sbjct: 255 RLKVVKNKVSPPFKIAEFDIMYGEGISRESSVIDLAVDNGIVKKSGSWFTYEGEQLGQGK 314

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL-----VADSLLQEPAINTKDDADKDDTDNVE 363
           E  ++ L+EN E+ + +E  + +  G+      +D L  +P +    + D DD  + E
Sbjct: 315 EKVRLSLKENPELTDELEDKIFKKLGVGKYAAASDELTDDP-VELVPNVDFDDEADTE 371


>gi|3219848|sp|O32377|RECA_CHRVI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|2326398|emb|CAA04233.1| recA protein [Allochromatium vinosum]
          Length = 347

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/345 (66%), Positives = 285/345 (82%), Gaps = 8/345 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL AAL+QI++ +GKG++M++G  G++   IE +S+GSLGLD+ALGIGG PKGR++
Sbjct: 4   NRKKALAAALTQIEKQFGKGSVMRMGDVGAV-RNIEAISTGSLGLDLALGIGGVPKGRVI 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+SQK GGT AFVDAEHALD +YA KLGV++ +LL+SQPDTG
Sbjct: 63  EIYGPESSGKTTLTLHIIAESQKLGGTAAFVDAEHALDPVYAEKLGVNMTDLLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSGAVD++V+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDMLVRSGAVDVVVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK  D + GN+T
Sbjct: 183 KRSNCCVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAIKKGDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF+Q EFDI+YG+GIS  GE+IDLGV    +DKSGAW+S+ G R+GQG+
Sbjct: 243 KVKVVKNKVAPPFRQAEFDILYGQGISREGEIIDLGVAEGFIDKSGAWYSYDGNRIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           +N + FL EN  IA+ IE+ +R       D LL +  +    +AD
Sbjct: 303 DNVRNFLCENPGIAQAIEARIR-------DKLLPKGGVEAPAEAD 340


>gi|238063453|ref|ZP_04608162.1| recA protein [Micromonospora sp. ATCC 39149]
 gi|237885264|gb|EEP74092.1| recA protein [Micromonospora sp. ATCC 39149]
          Length = 348

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/318 (64%), Positives = 261/318 (82%), Gaps = 2/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+ AL+QI + +GKG++M+LG +  +     V+ +GS+ LD+ALG+GG P+GR+V
Sbjct: 6   DREKALDLALAQIDKQFGKGSVMRLGERPVV--QTSVIPTGSIALDVALGVGGLPRGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA+ LGVD   LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEYAKALGVDTDALLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T  +
Sbjct: 124 EQALEIADMLVRSGAIDIVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGVL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ S+KD   + GN+T
Sbjct: 184 NNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDVRRIESLKDGTDVVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EFDIMYG+GIS  G LID+GV+ +I+ KSGAW+++ G +LGQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFDIMYGKGISREGSLIDVGVEQAIIRKSGAWYTYDGDQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIE 328
           E ++ FLREN ++A  IE
Sbjct: 304 EKAREFLRENPDVAAEIE 321


>gi|88855434|ref|ZP_01130098.1| recombination repairing protein [marine actinobacterium PHSC20C1]
 gi|88815341|gb|EAR25199.1| recombination repairing protein [marine actinobacterium PHSC20C1]
          Length = 386

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 212/331 (64%), Positives = 261/331 (78%), Gaps = 2/331 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ K+LE AL+QI R +GKG++M+LGS       +EV+ +GS+ LD+ALGIGG P+GRIV
Sbjct: 6   DREKSLETALAQIDRQFGKGSVMRLGSDER--APVEVIPTGSIALDVALGIGGLPRGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA +Q+ GG  AF+DAEHALD  YA KLGVD+  LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLHAIANAQRNGGIAAFIDAEHALDPEYAAKLGVDIDALLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG++D+IVIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKLT  +
Sbjct: 124 EQALEIADMLVRSGSIDLIVIDSVAALVPRAEIEGEMGDTHVGLQARLMSQALRKLTGGL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++   ++FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+T
Sbjct: 184 SQTNTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFKQ EFDI+YG GIS  G LID GV   IV KSGAW+++ G +LGQG+
Sbjct: 244 RVKVVKNKMAPPFKQAEFDILYGIGISREGSLIDFGVDHEIVRKSGAWYTYDGDQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           E S+ FL +N  IA  IE  + +  G+ A++
Sbjct: 304 EKSRAFLIQNPAIALEIEQKIMRKLGVGAEA 334


>gi|312898444|ref|ZP_07757834.1| protein RecA [Megasphaera micronuciformis F0359]
 gi|310620363|gb|EFQ03933.1| protein RecA [Megasphaera micronuciformis F0359]
          Length = 347

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/335 (61%), Positives = 267/335 (79%), Gaps = 8/335 (2%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K  ALE A+ +I++ +GKGAIM+LG        +EV+SSGSL +D+A+G+GG+P+GR++E
Sbjct: 4   KQAALENAMKKIEKDFGKGAIMRLGDLAEKMN-LEVISSGSLAVDLAVGVGGYPRGRVIE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH IA +QK GG  AF+DAEHALD +YAR LGVD  +LLISQPD GE
Sbjct: 63  IYGPESSGKTTLALHAIASAQKAGGIAAFIDAEHALDPVYARHLGVDTADLLISQPDNGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEIT+ LVRSGA+DIIV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  IS
Sbjct: 123 QALEITEELVRSGAIDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGIIS 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +SK I++FINQ+R K+G+MFG+PETTTGG ALKFY+SVR++IR+  +IK    + GN+ R
Sbjct: 183 KSKAIVIFINQLREKVGIMFGNPETTTGGRALKFYASVRMEIRKGEAIKSGTDVIGNRAR 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           +KVVKNK+A PF+  E DIMYG GIS  G L+DLG    I++KSG W+S+KG+RLGQG+E
Sbjct: 243 IKVVKNKVAPPFRNCEVDIMYGTGISKEGTLLDLGSSMEILEKSGTWYSYKGERLGQGKE 302

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           N K +L+E+ ++A  IE ++R       D+L+ EP
Sbjct: 303 NVKNYLKEHADVAAEIEQIIR-------DTLVAEP 330


>gi|145224556|ref|YP_001135234.1| recA protein [Mycobacterium gilvum PYR-GCK]
 gi|315444887|ref|YP_004077766.1| protein RecA [Mycobacterium sp. Spyr1]
 gi|189039598|sp|A4TCL7|RECA_MYCGI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|145217042|gb|ABP46446.1| recA protein [Mycobacterium gilvum PYR-GCK]
 gi|315263190|gb|ADT99931.1| protein RecA [Mycobacterium sp. Spyr1]
          Length = 350

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/343 (60%), Positives = 268/343 (78%), Gaps = 9/343 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE AL+QI + +GKG++M+LG    +   I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 7   DREKALELALAQIDKNFGKGSVMRLGE--DVRPPIAVIPTGSIALDVALGIGGLPRGRVI 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD   LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKLGVDTDALLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD     GN+T
Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF++ G++LGQG+
Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVEQGFIRKSGSWFTYDGEQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL-------VADSLLQEP 346
           EN++ FL +N ++   IE  +++  G+       VAD  L  P
Sbjct: 305 ENARNFLLQNPDVGNEIEKKIKEKLGIGAQLTDDVADDALPAP 347


>gi|226322616|ref|ZP_03798134.1| hypothetical protein COPCOM_00388 [Coprococcus comes ATCC 27758]
 gi|225208953|gb|EEG91307.1| hypothetical protein COPCOM_00388 [Coprococcus comes ATCC 27758]
          Length = 375

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 200/334 (59%), Positives = 269/334 (80%), Gaps = 1/334 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN  +K KAL+AA++++++ +GKGA+M+LG   +    +E V +GSL LD+ALG+GG PK
Sbjct: 20  MNDENKKKALDAAIAKLEKDFGKGAVMKLGDPAAQVH-VETVPTGSLSLDLALGVGGVPK 78

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTT+ALH IA+ QK GG   F+DAEHALD +YA+ +GVD+  L ISQ
Sbjct: 79  GRIIEIYGPESSGKTTVALHMIAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDELYISQ 138

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+G+QALEIT+ +VRSGA+DIIV+DSVAAL P+ EIEGDMG++  G+QARLMSQALRKL
Sbjct: 139 PDSGDQALEITETMVRSGAIDIIVVDSVAALVPKQEIEGDMGDTHVGLQARLMSQALRKL 198

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T  IS+S C+++FINQ+R K+GVMFG+PETTTGG ALKFYSSVR+D+RR  ++K    + 
Sbjct: 199 TPVISKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRMDVRRTETLKQGGEMV 258

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN  RVK+VKNK+A PFK+ EFDIM+G+GIS  G+++DL  K  +V+KSGAW+++ G+++
Sbjct: 259 GNHVRVKIVKNKIAPPFKEAEFDIMFGKGISREGDILDLATKIDLVNKSGAWYAYNGEKI 318

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           GQGREN+K +L  + EI E IE  +R + G+ A+
Sbjct: 319 GQGRENAKSYLTAHPEIMEEIEEKVRAHYGIGAE 352


>gi|224809075|emb|CAX52770.1| recombinase A [Francisella sp. FSC454]
          Length = 321

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/301 (69%), Positives = 257/301 (85%), Gaps = 1/301 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG Q +  + I+V+ SG + LD+ALGIGG+PKGRI+EIYG ESSGKTTL L  
Sbjct: 1   GKGSIMRLGDQEAAHD-IDVIPSGIIALDVALGIGGYPKGRIIEIYGHESSGKTTLTLLA 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IAQ QK GGT AFVDAEHALD  YA+ LGVD+ NL++SQPDTGEQALEI DMLVRSG VD
Sbjct: 60  IAQCQKQGGTAAFVDAEHALDPKYAKLLGVDVDNLIVSQPDTGEQALEIADMLVRSGGVD 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           I+VIDSVAALTPRAEIEGDMG+S  G+QARLMSQALRKLT++I RS  +++FINQ+RMKI
Sbjct: 120 IVVIDSVAALTPRAEIEGDMGDSHMGLQARLMSQALRKLTANIKRSNTLVIFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRL++R+ GSIKD   ++GN+ +VK+VKNK+A PFKQ +
Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLEVRKGGSIKDGIDVSGNEIKVKIVKNKVAPPFKQAD 239

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           F+++YGEGIS   ELIDLG K +I++KSGAW+S+KG+++GQG+E SK +L+ENI   + I
Sbjct: 240 FELIYGEGISLEAELIDLGAKYNIIEKSGAWYSYKGKKIGQGKEKSKEYLKENIAERDEI 299

Query: 328 E 328
           E
Sbjct: 300 E 300


>gi|194014353|ref|ZP_03052970.1| protein RecA [Bacillus pumilus ATCC 7061]
 gi|194013379|gb|EDW22944.1| protein RecA [Bacillus pumilus ATCC 7061]
          Length = 346

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 210/327 (64%), Positives = 265/327 (81%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG +      I  V SGSL LD ALGIGG+P+GRI+
Sbjct: 3   DRQAALDMALKQIEKQFGKGSIMKLGERTDTR--ISTVPSGSLALDTALGIGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ Q+ GG  AF+DAEHALD +YA+KLGV++  LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDI+VIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K  + I GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIMGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PF+  E DIMYGEGIS  GE+IDLG +  IV KSGAW+S++ +RLGQGR
Sbjct: 241 RIKVVKNKVAPPFRIAEVDIMYGEGISKEGEIIDLGSELDIVQKSGAWYSYQEERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K FL+EN +I   I+  +R++ GL
Sbjct: 301 ENAKQFLKENKDILLMIQEQIREHYGL 327


>gi|78221422|ref|YP_383169.1| recombinase A [Geobacter metallireducens GS-15]
 gi|123770376|sp|Q39Z80|RECA_GEOMG RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|78192677|gb|ABB30444.1| RecA DNA recombination protein [Geobacter metallireducens GS-15]
          Length = 339

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/327 (65%), Positives = 274/327 (83%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KA+E ALSQI++ +GKGAIM+LG+  ++ + I+ + +G+L LDIALG+GG P+GR++
Sbjct: 4   EREKAIELALSQIEKQFGKGAIMRLGADEALPD-IDAIPTGALSLDIALGVGGVPRGRVI 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH  A++QK GG  AFVDAEHALD  YARKLGV   +LL+SQPDTG
Sbjct: 63  EIYGPESSGKTTLALHIAAEAQKLGGIAAFVDAEHALDIGYARKLGVRTDDLLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI +MLVRSGAVD++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  I
Sbjct: 123 EQALEIAEMLVRSGAVDVLVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGII 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S C ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIR++ ++K  D++ G++T
Sbjct: 183 SKSNCCVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRKIATLKQGDAVIGSRT 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF++VEFDI YGEGIS  G+L+DL V   I+DKSGAWFS+   R+GQGR
Sbjct: 243 KVKVVKNKVAPPFREVEFDIYYGEGISRLGDLLDLAVDRKIIDKSGAWFSYGSDRIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           ENS+ FL+E+ E+   IE  + + AG+
Sbjct: 303 ENSRNFLKEHPEMVAEIEDKIYETAGI 329


>gi|229544364|ref|ZP_04433423.1| recA protein [Bacillus coagulans 36D1]
 gi|229325503|gb|EEN91179.1| recA protein [Bacillus coagulans 36D1]
          Length = 355

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/355 (58%), Positives = 274/355 (77%), Gaps = 4/355 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ +AL+ AL QI++ +GKG+IM+LG Q      +  + +GSL LDIALG+GG+P+GR++
Sbjct: 3   DRQEALDKALKQIEKQFGKGSIMRLGEQTDRV--VSTIPTGSLALDIALGVGGYPRGRVI 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ Q  GG  AF+DAEHALD +YA+KLGV++  LL+SQPDTG
Sbjct: 61  EIYGPESSGKTTVALHAIAEVQAQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDI+V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQALEIAEALVRSGAVDIVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++S  I +FINQ+R K+GVMFG+PE T GG ALKFYSSVRL++RR   IK    I GN+T
Sbjct: 181 NKSNTIAIFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQIKQGSDIVGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYGEGIS  GE++D+G    I+ KSGAW+++ G+RLGQGR
Sbjct: 241 KIKVVKNKVAPPFKTAEVDIMYGEGISKEGEIVDMGSDLDIIQKSGAWYAYNGERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD--SLLQEPAINTKDDADKDDTDNVE 363
           EN+K FL+EN ++   I + +R++  L  D  S   E AI+ ++  +  +  N+E
Sbjct: 301 ENAKQFLKENADLKNEIAAKIREHYDLTEDAGSHETEKAIDEQEAVEGQEELNLE 355


>gi|47571280|gb|AAT35797.1| RecA [Mycobacterium szulgai]
          Length = 324

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 199/318 (62%), Positives = 263/318 (82%), Gaps = 2/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 6   DREKALELAMAQIEKSYGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA++LGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKRLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSV AL PRAE+EG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVTALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+T
Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK++ PFKQ EFDI+YG+GIS  G LID+GV    + KSGAWF+++G++LGQG+
Sbjct: 244 RVKIVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVDQGFIRKSGAWFTYEGEQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIE 328
           EN++ FL EN ++A  IE
Sbjct: 304 ENARNFLMENADVANEIE 321


>gi|332181460|gb|AEE17148.1| Protein recA [Treponema brennaborense DSM 12168]
          Length = 397

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/334 (62%), Positives = 268/334 (80%), Gaps = 3/334 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           D     ++ +K KALEAA  QI++ +G G++M+LG+   +  G++V+ SGS+ LD ALGI
Sbjct: 7   DTNPPADMSEKLKALEAARLQIEKQFGTGSLMKLGTSADV-SGLDVIPSGSILLDEALGI 65

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+P+GRI+E+YGPESSGKTTLALH IA++QK GG  AF+DAEHALD IYA+ LGV++  
Sbjct: 66  GGYPRGRIIEMYGPESSGKTTLALHAIAEAQKLGGIAAFIDAEHALDPIYAKNLGVNIDE 125

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L +SQPDTGEQALEI + LVRSGAVDIIV+DSVAALTP+AEIEGDMG+S  G+QARLMSQ
Sbjct: 126 LWVSQPDTGEQALEIAESLVRSGAVDIIVVDSVAALTPQAEIEGDMGDSHMGLQARLMSQ 185

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI-- 239
           ALRKLT++I +SKCILVFINQ+RMKIGVMFG+PETTTGGNALKFYSS+RL+IRR+ SI  
Sbjct: 186 ALRKLTATIGKSKCILVFINQIRMKIGVMFGNPETTTGGNALKFYSSIRLEIRRIESIDA 245

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           K  +   GN+ RVK+VKNK+A PF++VE DI +G+G+S    L+D  VK   +DK GAWF
Sbjct: 246 KGAEDAVGNRVRVKIVKNKVAPPFRKVELDIYFGKGVSATASLLDAAVKYGFIDKKGAWF 305

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           + + +++GQGREN+  FL +N +   +IE  LR+
Sbjct: 306 TTETEKVGQGRENAIAFLEQNTDFTRDIEQKLRE 339


>gi|269219572|ref|ZP_06163426.1| protein RecA [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269210814|gb|EEZ77154.1| protein RecA [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 348

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/330 (61%), Positives = 264/330 (80%), Gaps = 2/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D++KAL+ ALSQI R +GKG++M+LG    +   I+V+ +G+  LD+ALG+GG P+GR++
Sbjct: 7   DRAKALDVALSQIDRQFGKGSVMRLGDH--VQTKIQVIPTGATSLDVALGVGGLPRGRVI 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A +QK GG  AF+DAEHALD  YA+KLGVD   L++SQPDTG
Sbjct: 65  EVYGPESSGKTTVALHAVANAQKNGGIAAFIDAEHALDPEYAKKLGVDTDALIVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DIIV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLIRSGALDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S S    +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLD+RR+ ++K+     GN+T
Sbjct: 185 SASGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDVRRIETLKEGSEPVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFKQ EFDIMYG+GIS  G +ID+GV   IV KSGAW+++ G +LGQG+
Sbjct: 245 RVKVVKNKMAPPFKQAEFDIMYGQGISREGCIIDMGVDGGIVRKSGAWYTYDGDQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           E ++ FLR+N EIA+ IE  +    G+  +
Sbjct: 305 EKARHFLRDNPEIADEIEGKILAKMGIAPE 334


>gi|329120469|ref|ZP_08249134.1| recombination protein A [Neisseria bacilliformis ATCC BAA-1200]
 gi|327461927|gb|EGF08257.1| recombination protein A [Neisseria bacilliformis ATCC BAA-1200]
          Length = 360

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/351 (61%), Positives = 281/351 (80%), Gaps = 7/351 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL AAL+QI++ +GKG++M++    S  E ++V+S+GS+GLD+ALG+GG P+GRIV
Sbjct: 15  DKGKALAAALAQIEKQFGKGSVMKMDGS-SETEDLQVISTGSIGLDLALGVGGLPRGRIV 73

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L TIAQ QK GG CAF+DAE+A D +YAR LGV ++ LL+SQPDTG
Sbjct: 74  EIFGPESSGKTTLCLETIAQCQKGGGVCAFIDAENAFDPVYARALGVKVEELLVSQPDTG 133

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG VD++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  I
Sbjct: 134 EQALEICDMLVRSGGVDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGHI 193

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQ 249
            ++  ++VFINQ+RMKIGVMFG+PETTTGGNALKFYSSVR+DIR    IK  D S  G +
Sbjct: 194 KKTNTLVVFINQLRMKIGVMFGNPETTTGGNALKFYSSVRIDIRGTQQIKKGDESPIGKE 253

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           T+VKV+KNK+A PF+  EFDI+YGEGIS+ GELI++GVK  I++KSGAW+S+ G ++GQG
Sbjct: 254 TKVKVIKNKVAPPFRTAEFDILYGEGISWEGELIEIGVKLKIIEKSGAWYSYNGAKIGQG 313

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           ++N +I+L+EN E+A  I+  +R  AG   D  + E    T+D+ D ++ +
Sbjct: 314 KDNVRIWLKENPEVAAEIDKKIRAEAG--TDLKITE---GTRDETDGEEPE 359


>gi|296330907|ref|ZP_06873382.1| recombinase A [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674425|ref|YP_003866097.1| multifunctional SOS repair factor [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151912|gb|EFG92786.1| recombinase A [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305412669|gb|ADM37788.1| multifunctional SOS repair factor [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 348

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/327 (62%), Positives = 266/327 (81%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG +      I  V SGSL LD ALGIGG+P+GRI+
Sbjct: 3   DRQAALDMALKQIEKQFGKGSIMKLGEKTDTR--ISTVPSGSLALDTALGIGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ Q+ GG  AF+DAEHALD +YA+KLGV+++ LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDI+V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K  + + GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYGEGIS  GE+IDLG +  IV KSG+W+S++ +RLGQGR
Sbjct: 241 KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K FL+EN +I   I+  +R++ GL
Sbjct: 301 ENAKQFLKENKDIMLMIQEQIREHYGL 327


>gi|31540559|gb|AAP49242.1| RecA [Mycobacterium phlei]
          Length = 321

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/318 (63%), Positives = 262/318 (82%), Gaps = 2/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE AL+QI++ +GKG+ M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 6   DREKALELALAQIEKNHGKGSGMRLGEE--VHQPISVIPTGSIALDVALGIGGLPRGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+T
Sbjct: 184 SNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTEAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK++ PFKQ EFDI+YG GIS  G LID+GV+   + KSG+WF+++G++LGQG+
Sbjct: 244 RVKIVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIE 328
           EN++ FL EN ++A  IE
Sbjct: 304 ENARNFLLENPDVANEIE 321


>gi|47571270|gb|AAT35792.1| RecA [Mycobacterium gordonae]
          Length = 324

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/318 (63%), Positives = 262/318 (82%), Gaps = 2/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 6   DREKALELAMAQIEKSYGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSV AL PRAE+EG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVTALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD  +  GN+T
Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTNAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV    + KSGAWF+++G++LGQG+
Sbjct: 244 RVKVVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVDQGFIRKSGAWFTYEGEQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIE 328
           EN++ FL EN +I   IE
Sbjct: 304 ENARNFLLENGDIGNEIE 321


>gi|285809806|gb|ADC36196.1| RecA [Burkholderia sp. GB-01]
          Length = 281

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/282 (72%), Positives = 248/282 (87%), Gaps = 1/282 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEATEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 281


>gi|167630439|ref|YP_001680938.1| reca protein [Heliobacterium modesticaldum Ice1]
 gi|238687993|sp|B0TII6|RECA_HELMI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|167593179|gb|ABZ84927.1| reca protein [Heliobacterium modesticaldum Ice1]
          Length = 346

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/322 (63%), Positives = 264/322 (81%), Gaps = 1/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL+ AL+ I++ +GKG+IM+LG   +    +EV+ +GS+ LD+ALGIGG P+GRIV
Sbjct: 6   NKLQALQQALNSIEKAFGKGSIMRLGEASAKLL-VEVIPTGSIALDMALGIGGVPRGRIV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA++QK GG  AF+DAEHALD +YAR LGVD+ NLL+SQPDTG
Sbjct: 65  EVYGPESSGKTTVALHIIAEAQKMGGMAAFIDAEHALDPVYARNLGVDIDNLLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+D++VIDSVAAL P+AEI+G+MG++  G+QARLMSQALRKLT  +
Sbjct: 125 EQALEICEALVRSGAIDVVVIDSVAALVPKAEIDGEMGDAHVGLQARLMSQALRKLTGVV 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+SK   +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++R+V ++K    + G++T
Sbjct: 185 SKSKTCCLFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRKVDTLKQGSDMIGSRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK  +FDIMYGEGIS  G L+DL V   IV+KSGAW+S+KG RLGQGR
Sbjct: 245 RVKVVKNKVAPPFKVADFDIMYGEGISREGSLVDLAVDMGIVEKSGAWYSYKGDRLGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           EN K FLR +  +A  IES++R
Sbjct: 305 ENVKEFLRNHPALAAEIESMIR 326


>gi|255767389|ref|NP_389576.2| recombinase A [Bacillus subtilis subsp. subtilis str. 168]
 gi|321315459|ref|YP_004207746.1| recombinase A [Bacillus subtilis BSn5]
 gi|251757322|sp|P16971|RECA_BACSU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|225185016|emb|CAB13567.2| multifunctional SOS repair factor [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291484248|dbj|BAI85323.1| multifunctional SOS repair regulator [Bacillus subtilis subsp.
           natto BEST195]
 gi|320021733|gb|ADV96719.1| recombinase A [Bacillus subtilis BSn5]
          Length = 348

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/327 (62%), Positives = 266/327 (81%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG +      I  V SGSL LD ALGIGG+P+GRI+
Sbjct: 3   DRQAALDMALKQIEKQFGKGSIMKLGEKTDTR--ISTVPSGSLALDTALGIGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ Q+ GG  AF+DAEHALD +YA+KLGV+++ LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDI+V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K  + + GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYGEGIS  GE+IDLG +  IV KSG+W+S++ +RLGQGR
Sbjct: 241 KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K FL+EN +I   I+  +R++ GL
Sbjct: 301 ENAKQFLKENKDIMLMIQEQIREHYGL 327


>gi|158313071|ref|YP_001505579.1| recombinase A [Frankia sp. EAN1pec]
 gi|158108476|gb|ABW10673.1| recA protein [Frankia sp. EAN1pec]
          Length = 347

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/327 (62%), Positives = 261/327 (79%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE AL+QI + +GKG++M+LG        I+ + +GS+ LD+ALGIGG P+GR+V
Sbjct: 5   DRDKALENALAQIDKQFGKGSVMRLGDD--TRPPIQAIPTGSIALDVALGIGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA KLGVD   LL+SQPDTG
Sbjct: 63  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAGKLGVDTDALLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 123 EQALEIADMLIRSGALDVIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGAL 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+T
Sbjct: 183 ANSGTTAIFINQLREKVGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTEAVGNRT 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PF+  EFDI+YG GIS  G LID+GV+  I+ KSGAW+++ G +LGQG+
Sbjct: 243 RVKVVKNKMAPPFRTAEFDIVYGGGISREGSLIDMGVEHGIIRKSGAWYTYDGDQLGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN++ FLR+N ++A  IE  +++  GL
Sbjct: 303 ENARSFLRDNPDLANEIEKRIKEKLGL 329


>gi|322436437|ref|YP_004218649.1| recA protein [Acidobacterium sp. MP5ACTX9]
 gi|321164164|gb|ADW69869.1| recA protein [Acidobacterium sp. MP5ACTX9]
          Length = 357

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 203/332 (61%), Positives = 277/332 (83%), Gaps = 1/332 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KA+EAA+SQ+++ +GKG+IM+LGS+ +I   I V+S+GS+  D ALG+GG P+GR+V
Sbjct: 4   ERGKAIEAAMSQLEKQFGKGSIMRLGSKEAIVP-IAVISTGSISFDAALGVGGVPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTT+ L  IA++QK GG  AFVDAEHALD  YA+KLGVD+ NLL+SQPD G
Sbjct: 63  EIFGPESSGKTTITLQIIAEAQKAGGLAAFVDAEHALDPGYAKKLGVDIDNLLVSQPDYG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LV+SGA+D++V+DSVAAL P+AE++G+MG+S  G+QARLMSQALRKLT ++
Sbjct: 123 EQALEIVEALVKSGAIDVLVVDSVAALVPKAELDGEMGDSHMGLQARLMSQALRKLTGTV 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S+  L+FINQ+R KIGVMFG+PETTTGG ALKFYSS+R+DIRR+G++K+ D + G++T
Sbjct: 183 SKSRTCLIFINQIRDKIGVMFGNPETTTGGKALKFYSSMRIDIRRIGAVKEGDVVVGSRT 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VK+VKNK+A+PF+  EFDI+YGEGIS  G+ +DL V  +IVDKSGAW+SF+G+R+GQGR
Sbjct: 243 KVKIVKNKVAAPFRDAEFDILYGEGISREGDTLDLAVLHNIVDKSGAWYSFQGERIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL 342
           EN + FL+ N ++   I+  LR+  G+ A S+
Sbjct: 303 ENVRNFLKTNRDVFGRIDGELRKKLGIGASSV 334


>gi|48781|emb|CAA39098.1| recA [Legionella pneumophila]
          Length = 323

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/300 (68%), Positives = 256/300 (85%), Gaps = 1/300 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M++G   ++   IE +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L  IA+ Q
Sbjct: 1   MRMGD-STVSRDIEAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLQVIAECQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGT AF+DAEHALD  YA+KLGV +  LL+SQPDTGEQALEITDMLVRS AVD+++ID
Sbjct: 60  KMGGTAAFIDAEHALDPSYAQKLGVKVDELLVSQPDTGEQALEITDMLVRSAAVDVVIID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I RS  +++FINQ+RMKIGVMFG
Sbjct: 120 SVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKRSNTLVIFINQIRMKIGVMFG 179

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           SPETTTGGNALKFY+SVRLDIRR+GSIK  + I G++TRVKVVKNK+A PFK  EFDI+Y
Sbjct: 180 SPETTTGGNALKFYASVRLDIRRIGSIKKGEEILGSETRVKVVKNKVAPPFKMTEFDILY 239

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
            EGIS   E+I+LGV+ ++++KSGAW+S+K +++GQG+EN +++L+EN ++A  +E  +R
Sbjct: 240 NEGISRESEIINLGVQLNLIEKSGAWYSYKQEKIGQGKENVRLYLKENPQVAAELEQQIR 299


>gi|220912231|ref|YP_002487540.1| recombinase A [Arthrobacter chlorophenolicus A6]
 gi|254790420|sp|B8HG89|RECA_ARTCA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|219859109|gb|ACL39451.1| recA protein [Arthrobacter chlorophenolicus A6]
          Length = 352

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/327 (62%), Positives = 266/327 (81%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D++KALEAAL+QI + +GKG++M+LG +  +   IEV+ +GS+ LD+ALGIGG P+GR++
Sbjct: 6   DRAKALEAALAQIDKQFGKGSVMRLGDE--VRAPIEVIPTGSIALDVALGIGGLPRGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD   LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPDYAAKLGVDTDALLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLV SG++DI+VIDSVAAL PRAEIEGDMG+S  G+QARLMSQALRK+T  +
Sbjct: 124 EQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKITGRL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+     GN+T
Sbjct: 184 SQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIQTLKEGADSVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           + K+VKNKMA PFK  EFDI+YG+GIS  G +ID+GV+  I+ KSG+WF++ G +LGQG 
Sbjct: 244 KAKIVKNKMAPPFKIAEFDIIYGQGISREGGIIDMGVEHGIIKKSGSWFTYDGDQLGQGM 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           ENS+ FLR+N E+A  +E L+++  G+
Sbjct: 304 ENSRRFLRDNPELAAELERLIKEKLGV 330


>gi|163839478|ref|YP_001623883.1| recombinase A [Renibacterium salmoninarum ATCC 33209]
 gi|162952954|gb|ABY22469.1| RecA recombinase [Renibacterium salmoninarum ATCC 33209]
          Length = 386

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/327 (62%), Positives = 267/327 (81%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALEAAL+QI + +GKG+IM+LG +  +   IE + +GS+ LD+ALGIGG P+GRIV
Sbjct: 41  DREKALEAALAQIDKQFGKGSIMRLGDE--VRAPIETIPTGSIALDVALGIGGLPRGRIV 98

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD+  LL+SQPDTG
Sbjct: 99  EIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPDYAAKLGVDVDALLVSQPDTG 158

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+ SG++DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T  +
Sbjct: 159 EQALEIMDMLIGSGSLDIVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGRL 218

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++K   +FINQ+R KIGV FGSPETT+GG ALKFY+SVR+D+RR+ ++K+     GN+T
Sbjct: 219 SQTKTTAIFINQLREKIGVFFGSPETTSGGKALKFYASVRIDVRRIQTLKEGADSVGNRT 278

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           + K+VKNKMA PFK  EFDI+YG+GIS  G +ID+GV+  I+ KSG+WF+++G +LGQG 
Sbjct: 279 KAKIVKNKMAPPFKIAEFDIIYGQGISREGGIIDMGVEHGIIKKSGSWFTYEGDQLGQGM 338

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           ENS+ FLR+N E+AE +E L+++  G+
Sbjct: 339 ENSRRFLRDNPELAEELERLIKEKLGV 365


>gi|154686111|ref|YP_001421272.1| recombinase A [Bacillus amyloliquefaciens FZB42]
 gi|166199598|sp|A7Z4W5|RECA_BACA2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|52545495|emb|CAH56426.1| RecA protein [Bacillus amyloliquefaciens FZB42]
 gi|154351962|gb|ABS74041.1| RecA [Bacillus amyloliquefaciens FZB42]
          Length = 347

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/327 (63%), Positives = 265/327 (81%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG +      I  V SGSL LD ALGIGG+P+GRI+
Sbjct: 3   DRQAALDMALKQIEKQFGKGSIMKLGEKTDTR--ISTVPSGSLALDTALGIGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ Q+ GG  AF+DAEHALD +YA+KLGV+++ LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVALHAIAEVQEKGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDI+V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K  + + GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PF+  E DIMYGEGIS  GE+IDLG +  IV KSG+W+S++ +RLGQGR
Sbjct: 241 RIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K FL+EN +I   I+  +R+  GL
Sbjct: 301 ENAKQFLKENKDIMLMIQEQIREYYGL 327


>gi|55669149|gb|AAV54513.1| RecA protein [Burkholderia caribensis]
          Length = 279

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 203/280 (72%), Positives = 248/280 (88%), Gaps = 1/280 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G++M+LG QG   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSVMRLG-QGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA+KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+I
Sbjct: 60  EMQKIGGTAAFIDAEHALDIQYAQKLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQG
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYSGERIGQG 279


>gi|309790541|ref|ZP_07685098.1| recA protein [Oscillochloris trichoides DG6]
 gi|308227414|gb|EFO81085.1| recA protein [Oscillochloris trichoides DG6]
          Length = 356

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/352 (59%), Positives = 273/352 (77%), Gaps = 4/352 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AA++QI R +GKG+IM++G   S    IEV+ +G++ LDIALG+GG P+GR+ 
Sbjct: 6   EKEKALAAAMTQIDRKFGKGSIMKMGEASSRL-AIEVIPTGAIALDIALGVGGLPRGRVT 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTLA H IA++QK GG CAF+DAEHA D IYA++ GV + +LL+SQPDTG
Sbjct: 65  EIFGPESSGKTTLAQHIIAEAQKMGGVCAFIDAEHAFDPIYAQRCGVKIDDLLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRS A+D+IVIDSVAAL PRAEIEGDMG+SLPG+QARLMSQALRKL+ +I
Sbjct: 125 EQALEICETLVRSNALDVIVIDSVAALVPRAEIEGDMGDSLPGLQARLMSQALRKLSGAI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++S+ +++F+NQ+RMKIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++K      G + 
Sbjct: 185 NKSRTVVIFLNQLRMKIGVMFGSPETTTGGQALKFYASVRLDIRRIETLKQGQEAIGARA 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV+KNK+A PF+Q EFDI+  EGIS  G ++D+GV+  I+ KSGAWF     RLGQGR
Sbjct: 245 RVKVIKNKVAPPFRQAEFDILANEGISREGNIMDIGVEMGIIRKSGAWFYLGEDRLGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           EN + FL+EN  + + IE L++  A   A+++      ++ DD   +D D +
Sbjct: 305 ENVREFLKENKALTDEIERLVKAQAISTANAIALP---SSGDDEAAEDEDGL 353


>gi|325962845|ref|YP_004240751.1| protein RecA [Arthrobacter phenanthrenivorans Sphe3]
 gi|164606908|emb|CAP64295.1| recombinase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468932|gb|ADX72617.1| protein RecA [Arthrobacter phenanthrenivorans Sphe3]
          Length = 351

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/327 (62%), Positives = 266/327 (81%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D++KALEAAL+QI + +GKG++M+LG +  +   IEV+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 6   DRAKALEAALAQIDKQFGKGSVMRLGDE--VRAPIEVIPTGSIALDVALGIGGLPRGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD   LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHALDPEYAAKLGVDTDALLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLV SG++D+IVIDSVAAL PRAEIEGDMG+S  G+QARLMSQALRK+T  +
Sbjct: 124 EQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKITGRL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ ++K+     GN+T
Sbjct: 184 SQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQTLKEGADSVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           + K+VKNKMA PFK  EFDI+YG+GIS  G +ID+GV+  I+ KSG+WF++ G +LGQG 
Sbjct: 244 KAKIVKNKMAPPFKVAEFDIIYGQGISREGGIIDMGVEHGIIKKSGSWFTYDGDQLGQGM 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           ENS+ FLR+N E+A  +E L+++  G+
Sbjct: 304 ENSRRFLRDNPELAAELERLIKEKLGV 330


>gi|163814166|ref|ZP_02205558.1| hypothetical protein COPEUT_00320 [Coprococcus eutactus ATCC 27759]
 gi|158450615|gb|EDP27610.1| hypothetical protein COPEUT_00320 [Coprococcus eutactus ATCC 27759]
          Length = 354

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 198/343 (57%), Positives = 273/343 (79%), Gaps = 2/343 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+AA++QI++ YGKG++M+LG   +    I+V+ +GSL LDIALG+GG P+GRI+
Sbjct: 13  DKKKALDAAIAQIEKQYGKGSVMKLGDSNANMN-IDVIPTGSLSLDIALGLGGIPRGRII 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E++GPESSGKTT+ALH +A+ QK GG   F+DAEHALD  YA+ +GVD+ NL ISQPD G
Sbjct: 72  EVFGPESSGKTTVALHIVAEIQKRGGIAGFIDAEHALDPTYAKNIGVDIDNLYISQPDCG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ +VRSGAVD++++DSVAAL P+AEI+G+MG+S  G+ ARLMSQALRKLT+ +
Sbjct: 132 EQALEITETMVRSGAVDVVIVDSVAALVPKAEIDGEMGDSHMGLHARLMSQALRKLTAVV 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++ C+++FINQ+R K+GV+FG+PE TTGG ALKFY+SVRLD+RR+ +++    I GN+T
Sbjct: 192 SKTNCVVIFINQLREKVGVVFGNPEVTTGGRALKFYASVRLDVRRIDTLRQGGEIVGNRT 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFK+ EFDI++G+GIS  G+++DL V   IVDKSGAW+++ G ++GQGR
Sbjct: 252 RVKIVKNKVAPPFKEAEFDIVFGKGISKVGDILDLAVANDIVDKSGAWYAYNGNKIGQGR 311

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL-LQEPAINTKD 352
           EN+K++L  N  I   IE  +R+  G+  D     EPA N ++
Sbjct: 312 ENAKMYLENNETICSEIEQKVREILGVAGDGAGTTEPAENEEE 354


>gi|189462741|ref|ZP_03011526.1| hypothetical protein BACCOP_03438 [Bacteroides coprocola DSM 17136]
 gi|189430541|gb|EDU99525.1| hypothetical protein BACCOP_03438 [Bacteroides coprocola DSM 17136]
          Length = 348

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/324 (63%), Positives = 265/324 (81%), Gaps = 2/324 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  +K KAL+AA+ +I++ +GKG+IM++G      + +EV+ +GS+ L+ ALG+GG+PKG
Sbjct: 19  NNSEKLKALQAAMDKIEKSFGKGSIMKMGDNH--VQEVEVIPTGSIALNAALGVGGYPKG 76

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQP
Sbjct: 77  RIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDIDNLWISQP 136

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++  G+QARLMSQALRKLT
Sbjct: 137 DNGEQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNRVGLQARLMSQALRKLT 196

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           S+IS++    +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR+   IKD + I G
Sbjct: 197 SAISKTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRKGQPIKDGEDIIG 256

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           NQTRVK+VKNK+A PF++ EFDIM+GEGIS  GE+IDLG +  I+ KSG+W+S+   +LG
Sbjct: 257 NQTRVKIVKNKVAPPFRKAEFDIMFGEGISRSGEIIDLGAELGIIKKSGSWYSYNETKLG 316

Query: 308 QGRENSKIFLRENIEIAENIESLL 331
           QGR+ +K  +++N E+AE +E L+
Sbjct: 317 QGRDAAKQCIQDNPELAEELEGLI 340


>gi|296454323|ref|YP_003661466.1| recA protein [Bifidobacterium longum subsp. longum JDM301]
 gi|296183754|gb|ADH00636.1| recA protein [Bifidobacterium longum subsp. longum JDM301]
          Length = 397

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/327 (61%), Positives = 263/327 (80%), Gaps = 2/327 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL+Q+++ +GKG+ M+LG Q    + +EV+ +GSL LD+ALGIGG PKGRIVE
Sbjct: 23  RKAALDTALAQVEKSFGKGSAMRLGDQPE--QNVEVIPTGSLALDMALGIGGLPKGRIVE 80

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH +A +QK GG  A++DAEHALD  YARKLGVD  +L++SQPD GE
Sbjct: 81  IYGPESSGKTTLALHVVANAQKKGGVAAYIDAEHALDPAYARKLGVDTDSLIVSQPDNGE 140

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T +++
Sbjct: 141 QALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALA 200

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLDIRR+ ++K+ D   GN+TR
Sbjct: 201 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDIRRIQTLKNGDEAVGNRTR 260

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNKMA PFK  EFD++YGEGIS  G +ID+  +  +V KSG+WF+++G +LGQGRE
Sbjct: 261 VKVVKNKMAPPFKSAEFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTYEGDQLGQGRE 320

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLV 338
             + FL++N  I E IE+ ++   GL+
Sbjct: 321 KVRQFLKDNPAITEEIENKVKAEFGLI 347


>gi|315064610|gb|ADT78389.1| RecA [Yersinia entomophaga]
          Length = 307

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 201/303 (66%), Positives = 255/303 (84%), Gaps = 2/303 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKGAIM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGAIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDVVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENS 313
            N+
Sbjct: 304 ANA 306


>gi|219848651|ref|YP_002463084.1| recombinase A [Chloroflexus aggregans DSM 9485]
 gi|254790427|sp|B8GAQ9|RECA_CHLAD RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|219542910|gb|ACL24648.1| recA protein [Chloroflexus aggregans DSM 9485]
          Length = 351

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/348 (60%), Positives = 267/348 (76%), Gaps = 7/348 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AA++QI R +GKG+IM++G  G     IE + +GS+ LDIALGIGG P+GR++
Sbjct: 6   EKEKALAAAMAQIDRKFGKGSIMKMGEVGGRL-AIEAIPTGSIALDIALGIGGVPRGRVI 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTLA H IA++QK GG  AF+DAEHA D +YA + GV++ +LL+SQPDTG
Sbjct: 65  EIFGPESSGKTTLAQHIIAEAQKMGGVGAFIDAEHAFDPVYAARCGVNISDLLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI +MLVRS AVD+IVIDSVAAL PRAEIEGDMG+S+PGMQARLMSQALRKL+ +I
Sbjct: 125 EQALEICEMLVRSNAVDVIVIDSVAALVPRAEIEGDMGDSMPGMQARLMSQALRKLSGAI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S+ +++FINQ+RMKIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++K      G++ 
Sbjct: 185 SKSRAVVIFINQLRMKIGVMFGSPETTTGGQALKFYASVRLDIRRIETLKQGQEAIGSRV 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV+KNK+A PF+Q EFDI+  EGIS  G +ID+G +  I+ KSGAWF     RLGQGR
Sbjct: 245 RVKVIKNKVAPPFRQAEFDILANEGISREGNIIDIGTELGIIRKSGAWFYLGEDRLGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           EN + FL+ N  + + IE L++      A +L    AI    D   DD
Sbjct: 305 ENVREFLKNNPALTDEIERLIK------AQALTNPSAIAPSADIGDDD 346


>gi|23465975|ref|NP_696578.1| recombinase A [Bifidobacterium longum NCC2705]
 gi|239621261|ref|ZP_04664292.1| protein recA [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|30316236|sp|Q8G4G9|RECA_BIFLO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|23326690|gb|AAN25214.1| RecA protein [Bifidobacterium longum NCC2705]
 gi|239515722|gb|EEQ55589.1| protein recA [Bifidobacterium longum subsp. infantis CCUG 52486]
          Length = 397

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/327 (61%), Positives = 263/327 (80%), Gaps = 2/327 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL+Q+++ +GKG+ M+LG Q    + +EV+ +GSL LD+ALGIGG PKGRIVE
Sbjct: 23  RKAALDTALAQVEKSFGKGSAMRLGDQPE--QNVEVIPTGSLALDMALGIGGLPKGRIVE 80

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH +A +QK GG  A++DAEHALD  YARKLGVD  +L++SQPD GE
Sbjct: 81  IYGPESSGKTTLALHVVANAQKKGGVAAYIDAEHALDPAYARKLGVDTDSLIVSQPDNGE 140

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T +++
Sbjct: 141 QALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALA 200

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLDIRR+ ++K+ D   GN+TR
Sbjct: 201 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDIRRIQTLKNGDEAVGNRTR 260

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNKMA PFK  EFD++YGEGIS  G +ID+  +  +V KSG+WF+++G +LGQGRE
Sbjct: 261 VKVVKNKMAPPFKSAEFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTYEGDQLGQGRE 320

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLV 338
             + FL++N  I E IE+ ++   GL+
Sbjct: 321 KVRQFLKDNPAITEEIENKVKAEFGLI 347


>gi|315604454|ref|ZP_07879520.1| recombination protein A [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315314160|gb|EFU62211.1| recombination protein A [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 363

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 203/318 (63%), Positives = 259/318 (81%), Gaps = 2/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D++KALE ALSQI + +GKG++M+LG        ++V+ +GSL LD+ALGIGG P+GR++
Sbjct: 15  DRNKALEVALSQIDKQFGKGSVMRLGDDNR--PPVQVIPTGSLALDVALGIGGLPRGRVI 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +QK GG  AF+DAEHALD +YAR LGVD  +LL+SQPDTG
Sbjct: 73  EIYGPESSGKTTVALHAVASAQKAGGNAAFIDAEHALDPVYARALGVDTDSLLVSQPDTG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSG +DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 133 EQALEIADMLIRSGGIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S +    +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+  +  GN+T
Sbjct: 193 SATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKEAGAPVGNRT 252

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R KVVKNKMA PFKQ EFDI+YG+GIS  G +ID+GV+A IV KSG+WF++   +LGQG+
Sbjct: 253 RAKVVKNKMAPPFKQAEFDIVYGKGISREGSIIDMGVEAGIVRKSGSWFTYGDDQLGQGK 312

Query: 311 ENSKIFLRENIEIAENIE 328
           EN + FL +N E+A  IE
Sbjct: 313 ENVRQFLADNPELANEIE 330


>gi|55669151|gb|AAV54514.1| RecA protein [Burkholderia phymatum STM815]
          Length = 279

 Score =  432 bits (1110), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/280 (72%), Positives = 248/280 (88%), Gaps = 1/280 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G++M+LG QG   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A
Sbjct: 1   GSVMRLG-QGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA+KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+I
Sbjct: 60  EMQKLGGTAAFIDAEHALDIQYAQKLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQG
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQG 279


>gi|294790979|ref|ZP_06756137.1| protein RecA [Scardovia inopinata F0304]
 gi|294458876|gb|EFG27229.1| protein RecA [Scardovia inopinata F0304]
          Length = 368

 Score =  432 bits (1110), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/351 (58%), Positives = 269/351 (76%), Gaps = 2/351 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL  AL+Q+++ +GKG+ M+LG +      +EV+ +GSL LD+ALGIGG P+GRIVE
Sbjct: 15  RQAALNTALAQVEKAFGKGSAMRLGDKPVTH--VEVIPTGSLALDMALGIGGLPRGRIVE 72

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YAR LGVD  +L+ISQPD GE
Sbjct: 73  IFGPESSGKTTIALHAVANAQRNGGVAAFIDAEHALDPEYARNLGVDTDSLIISQPDNGE 132

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DML+RSGA+DIIVIDSVAAL P+AEI+G+MG++  G+QARLMSQALRK+T ++S
Sbjct: 133 QALEIADMLIRSGALDIIVIDSVAALVPKAEIDGEMGDNHVGLQARLMSQALRKMTGALS 192

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S    VFINQ+R KIGVMFG+PETTTGG ALKFY+SVRLDIRRV ++K+ D   GN+TR
Sbjct: 193 QSHTTAVFINQLREKIGVMFGNPETTTGGKALKFYASVRLDIRRVQTLKNGDEAIGNRTR 252

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNKMA PFK  EFDI+YGEG+S  G +ID+ +   I+ KSG+WF++ G +LGQGRE
Sbjct: 253 VKVVKNKMAPPFKSAEFDILYGEGVSREGSIIDMALSTGIIKKSGSWFTYDGDQLGQGRE 312

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
             + FL++N E+   +E+ ++   GL+ D    +   NT  +     +DN+
Sbjct: 313 RVRQFLKDNPELETELETKIKVAYGLIPDPNAAQEEKNTDSEQKGASSDNI 363


>gi|310287748|ref|YP_003939006.1| RecA protein [Bifidobacterium bifidum S17]
 gi|311064634|ref|YP_003971359.1| protein RecA [Bifidobacterium bifidum PRL2010]
 gi|309251684|gb|ADO53432.1| RecA protein [Bifidobacterium bifidum S17]
 gi|310866953|gb|ADP36322.1| RecA protein [Bifidobacterium bifidum PRL2010]
          Length = 396

 Score =  432 bits (1110), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 200/327 (61%), Positives = 265/327 (81%), Gaps = 2/327 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL++AL Q+++ +GKG+ M+LG +    + +EV+ +GSL LD+ALGIGG PKGRIVE
Sbjct: 37  RKAALDSALEQVEKSFGKGSAMRLGDKPE--QNVEVIPTGSLALDLALGIGGLPKGRIVE 94

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH +A +QK GG  AF+DAEHALD +YAR LGVD  +L++SQPD GE
Sbjct: 95  IYGPESSGKTTLALHVVANAQKNGGVAAFIDAEHALDPVYARHLGVDTDSLIVSQPDNGE 154

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DML+RSGA+D+IVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRK+T +++
Sbjct: 155 QALEIADMLIRSGALDVIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKMTGALA 214

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLDIRR+ +IK+ +   GN+T+
Sbjct: 215 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDIRRIQTIKNGEEAVGNRTK 274

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNKMA PFK  EFD++YGEGIS  G ++D+ ++ ++V KSG+WF++ G +LGQGRE
Sbjct: 275 VKVVKNKMAPPFKSAEFDVLYGEGISKEGSVLDMALQCNVVKKSGSWFTYDGDQLGQGRE 334

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLV 338
           N + FL++N +I E I + ++   GL+
Sbjct: 335 NVRKFLKDNPQITEEIGNKVKAEFGLI 361


>gi|270284057|ref|ZP_05965477.2| protein RecA [Bifidobacterium gallicum DSM 20093]
 gi|270278014|gb|EFA23868.1| protein RecA [Bifidobacterium gallicum DSM 20093]
          Length = 388

 Score =  432 bits (1110), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 201/327 (61%), Positives = 263/327 (80%), Gaps = 2/327 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + +AL+ AL Q+++ +GKG+ M+LG +    + +EV+ +GSL LD+ALGIGG P+GRIVE
Sbjct: 38  RQEALDTALKQVEKSFGKGSAMRLGDRPE--QDVEVIPTGSLALDMALGIGGLPRGRIVE 95

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH +A +Q+ GG  AF+DAEHALD +YARKLGVD  +L++SQPD GE
Sbjct: 96  IYGPESSGKTTLALHVVANAQRNGGVAAFIDAEHALDPVYARKLGVDTDSLIVSQPDNGE 155

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DML+RSGA+D+IV+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRK+T +++
Sbjct: 156 QALEIADMLIRSGALDVIVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKMTGALA 215

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGV FGSPETTTGG ALKFYSSVRLDIRR+ +IK  D   GN+TR
Sbjct: 216 QAGTTAIFINQLREKIGVFFGSPETTTGGKALKFYSSVRLDIRRIQTIKAGDEAVGNRTR 275

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNKMA PFK  EFD++YGEGIS  G ++D+ ++  +V KSG+WF++ G +LGQGRE
Sbjct: 276 VKVVKNKMAPPFKSAEFDVLYGEGISREGSILDMALQTDVVKKSGSWFTYNGDQLGQGRE 335

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLV 338
           N + +L++  E+A  IE  ++   GL+
Sbjct: 336 NVRKYLKDTPELARQIEDQVKVAFGLL 362


>gi|148284218|ref|YP_001248308.1| recombinase A [Orientia tsutsugamushi str. Boryong]
 gi|146739657|emb|CAM79446.1| recombinase A [Orientia tsutsugamushi str. Boryong]
          Length = 356

 Score =  432 bits (1110), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/351 (58%), Positives = 280/351 (79%), Gaps = 7/351 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K   L+  LS I + +GKG+IM+  +Q  I +  +V+SSGS+ +D ALGIGGFPKGR+ E
Sbjct: 3   KEHTLDDVLSIINKTHGKGSIMRC-NQRPIGKA-QVISSGSVCIDTALGIGGFPKGRVSE 60

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPE+SGKTT+ALH +A+ QK G +C ++DAEHALD  YA++LGV++ +L+ISQPDTGE
Sbjct: 61  IYGPEASGKTTVALHAVAECQKGGESCVYIDAEHALDLQYAQRLGVNINSLIISQPDTGE 120

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSGAV +IV+DSVAAL P+AE+EG++G+   G+QARLMSQALRKL +S+S
Sbjct: 121 QALEIADTLVRSGAVGLIVVDSVAALVPKAELEGEIGDHNIGLQARLMSQALRKLVASVS 180

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++ C ++FINQ+RMKIG+MFGSPETTTGGNALKFY+S+R++IR+V  IKDK+ + G QT+
Sbjct: 181 KTNCTIIFINQIRMKIGIMFGSPETTTGGNALKFYASIRMEIRKVSPIKDKEEVIGYQTK 240

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNK+A PFK V+FDI+YG GIS  GELIDLGVK  I++K+GAWFS+K  ++GQGRE
Sbjct: 241 VKIVKNKLAPPFKVVDFDIIYGLGISKEGELIDLGVKLGIIEKAGAWFSYKDHKIGQGRE 300

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           N+K +LRE+  IA  +E  +RQ + ++ +SL     + T ++  + + DN+
Sbjct: 301 NAKQYLREHPSIALELEQQIRQKSDIIQNSL-----VITNENEHEANLDNI 346


>gi|283458479|ref|YP_003363105.1| RecA/RadA recombinase [Rothia mucilaginosa DY-18]
 gi|283134520|dbj|BAI65285.1| RecA/RadA recombinase [Rothia mucilaginosa DY-18]
          Length = 367

 Score =  432 bits (1110), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/317 (64%), Positives = 256/317 (80%), Gaps = 2/317 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           ++KALEA ++QI + YGKGA+M+LG +       EV+S+G++ LD ALGIGG P+GR++E
Sbjct: 18  RAKALEAVMAQIDKNYGKGAVMRLGDKE--ITKTEVISTGAIALDAALGIGGLPRGRVIE 75

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH +A  QK GG  AF+DAEHALD IYA KLGVD+  LL+SQPDTGE
Sbjct: 76  IYGPESSGKTTVALHAVANVQKAGGVAAFIDAEHALDPIYAAKLGVDIDQLLVSQPDTGE 135

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DMLV SGAVDI+V+DSVAAL PRAEIEGDMG+S  G+QARLMSQALRK+T  +S
Sbjct: 136 QALEIMDMLVGSGAVDIVVVDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKITGRLS 195

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
            +    +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+DIRR+ ++KD  +  GN+TR
Sbjct: 196 ATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDIRRIETLKDGANPIGNRTR 255

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
            K+VKNKMA PFKQ EFDI+YGEGIS  G ++DL V+  IV KSGAWF++ G++LGQGRE
Sbjct: 256 AKIVKNKMAPPFKQAEFDILYGEGISVEGGILDLAVENDIVKKSGAWFTYDGEQLGQGRE 315

Query: 312 NSKIFLRENIEIAENIE 328
           N +  L++N E+ E ++
Sbjct: 316 NVRKLLKDNPELTEELQ 332


>gi|11387040|sp|Q9S660|RECA_BIFBR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|4416209|gb|AAD20261.1| RecA protein [Bifidobacterium breve]
          Length = 392

 Score =  432 bits (1110), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/330 (61%), Positives = 264/330 (80%), Gaps = 2/330 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL+Q+++ +GKG+ M+LG Q    + +EV+ +GSL LD+ALGIGG PKGRIVE
Sbjct: 23  RKAALDTALAQVEKSFGKGSAMRLGDQP--VQNVEVIPTGSLALDMALGIGGLPKGRIVE 80

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH +A +QK GG  A++DAEHALD  YARKLGVD  +L++SQPD GE
Sbjct: 81  IYGPESSGKTTLALHVVANAQKKGGVAAYIDAEHALDPAYARKLGVDTDSLIVSQPDNGE 140

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T +++
Sbjct: 141 QALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALA 200

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLDIRR+ ++K+ D   GN+TR
Sbjct: 201 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDIRRIQTLKNGDEAVGNRTR 260

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNKMA PFK  EFD++YGEGIS  G +ID+  +  +V KSG+WF+++G +LGQGRE
Sbjct: 261 VKVVKNKMAPPFKSAEFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTYEGDQLGQGRE 320

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADS 341
             + FL++N  I E IE+ ++   GL+  +
Sbjct: 321 KVRQFLKDNPAITEEIENKVKAEFGLIGSA 350


>gi|306836316|ref|ZP_07469296.1| recombination protein A [Corynebacterium accolens ATCC 49726]
 gi|304567787|gb|EFM43372.1| recombination protein A [Corynebacterium accolens ATCC 49726]
          Length = 378

 Score =  432 bits (1110), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/327 (63%), Positives = 262/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+AA++ I++ YGKGA+M+LG        I+ +SSG+  +D+ALGIGGFP+GRIV
Sbjct: 16  DRQKALDAAMAMIEKDYGKGAVMRLGDDDR--PPIKAISSGNTAIDVALGIGGFPRGRIV 73

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA +QK GG  AF+DAEHALD  YAR LGVD  NLL+SQPDTG
Sbjct: 74  EIYGPESSGKTTVALHAIASAQKDGGIAAFIDAEHALDPQYARLLGVDTDNLLVSQPDTG 133

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DIIV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 134 EQALEIADMLVRSGAIDIIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 193

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVR DIRR+ ++KD     GN+T
Sbjct: 194 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRCDIRRIQTLKDGQDAIGNRT 253

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK++ PFK  EFDIMYGEGIS    +IDLGV+   + KSG+WF+++G +LGQG+
Sbjct: 254 KLKVVKNKVSPPFKIAEFDIMYGEGISRESSIIDLGVENGFIRKSGSWFTYEGDQLGQGK 313

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           E ++ FL++N ++A  IE  + Q  G+
Sbjct: 314 EKARSFLKDNPDLANEIEKKIFQKLGI 340


>gi|303238099|ref|ZP_07324639.1| RecA protein [Prevotella disiens FB035-09AN]
 gi|302481734|gb|EFL44789.1| RecA protein [Prevotella disiens FB035-09AN]
          Length = 342

 Score =  432 bits (1110), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 209/322 (64%), Positives = 271/322 (84%), Gaps = 2/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+AA+S+I++ +GKG+IM++G +    E +EV+ +GS+GLD+ALG+GG+P+GRI+E
Sbjct: 15  KLKALQAAMSKIEKDFGKGSIMRMGDEQ--IENVEVIPTGSIGLDVALGVGGYPRGRIIE 72

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA+KLGVD+ NL ISQPD GE
Sbjct: 73  IYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAQKLGVDVDNLWISQPDNGE 132

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RS A+DI+V+DSVAALTP+ EIEGDMG+S  G+QARLMSQALRKLTS+IS
Sbjct: 133 QALEIADQLIRSSAIDILVVDSVAALTPKKEIEGDMGDSNVGLQARLMSQALRKLTSTIS 192

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGVMFG+PETTTGGNALKFYSSVRLDIRRV S+KD D+I GNQ R
Sbjct: 193 KTNTCCIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRVTSVKDGDNIIGNQVR 252

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF++VEF+I++GEGIS  GE++DLGV+ +I+ KSG+WFS+ G +L QGR+
Sbjct: 253 VKVVKNKVAPPFRKVEFEILFGEGISKVGEILDLGVEYNIIQKSGSWFSYNGTKLAQGRD 312

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
            +K  L++N E+ E +  L+ +
Sbjct: 313 ATKTMLKDNPELVEEVSQLINE 334


>gi|227488693|ref|ZP_03919009.1| recombination protein RecA [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227542308|ref|ZP_03972357.1| recombination protein RecA [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227091354|gb|EEI26666.1| recombination protein RecA [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227181908|gb|EEI62880.1| recombination protein RecA [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 391

 Score =  431 bits (1109), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/318 (65%), Positives = 261/318 (82%), Gaps = 2/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+AAL +I++ +GKG+IM+LG +      IE +SSG+  +D+ALGIGGFP+GRIV
Sbjct: 29  DREKALDAALKKIEKDFGKGSIMRLGEEK--HPPIEAISSGNTAIDVALGIGGFPRGRIV 86

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA +QK GG  AF+DAEHALD  YA+KLGVD   LL+SQPDTG
Sbjct: 87  EIYGPESSGKTTVALHAIASAQKEGGIAAFIDAEHALDPEYAKKLGVDTDQLLVSQPDTG 146

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRK+T ++
Sbjct: 147 EQALEIADMLIRSGAIDIVVIDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKMTGAL 206

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR DIRR+ ++KD     GN+T
Sbjct: 207 YQSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRIQTLKDGGDAIGNRT 266

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK++ PFK  EFDIM+GEGIS    +IDLGV+  IV KSG+WF+++G +LGQG+
Sbjct: 267 KLKVVKNKVSPPFKIAEFDIMFGEGISRESSIIDLGVENGIVMKSGSWFTYEGDQLGQGK 326

Query: 311 ENSKIFLRENIEIAENIE 328
           E S+ FL+ N E+A+ IE
Sbjct: 327 EKSRQFLKSNPELADEIE 344


>gi|224438293|ref|ZP_03659220.1| recombinase A [Helicobacter cinaedi CCUG 18818]
 gi|313144733|ref|ZP_07806926.1| protein recA [Helicobacter cinaedi CCUG 18818]
 gi|313129764|gb|EFR47381.1| protein recA [Helicobacter cinaedi CCUG 18818]
          Length = 344

 Score =  431 bits (1109), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/336 (61%), Positives = 267/336 (79%), Gaps = 4/336 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KA+E AL QI + +GKGA+++LG +    E I+ +S+GSLGLD+ALGIGG PKGRI+E
Sbjct: 6   KQKAIELALKQIDKAFGKGALVRLGDKQ--VEKIDSISTGSLGLDMALGIGGVPKGRIIE 63

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL+L  +A+ QK GG CAF+DAEHALD  YA+ LGVD +NLL+SQPDTGE
Sbjct: 64  IYGPESSGKTTLSLQIVAECQKNGGICAFIDAEHALDVYYAKHLGVDTENLLVSQPDTGE 123

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI + L RSGAVD++VIDSVAALTP+AEIEGDMG+   G+QARLMS ALRK+T  + 
Sbjct: 124 QALEILETLTRSGAVDLVVIDSVAALTPKAEIEGDMGDQHVGLQARLMSHALRKITGILH 183

Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +    L+FINQ+RMKIGVM +GSPETTTGGNALKFY+SVR+D+RR+ ++K  +   GN+T
Sbjct: 184 KMNTTLIFINQIRMKIGVMGYGSPETTTGGNALKFYASVRIDVRRIATLKQNEQQIGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           + KVVKNK+A PF++ EFDIM+GEGIS  GE+ID G+K  I+DKSGAW S+  ++LGQGR
Sbjct: 244 KAKVVKNKVAPPFREAEFDIMFGEGISREGEIIDYGIKLDIIDKSGAWLSYNDKKLGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           EN+K+ L+E+  +AE I   +++  G   D ++  P
Sbjct: 304 ENAKLLLKEDKALAEEITLKIKEQIG-AKDEIMPLP 338


>gi|225012500|ref|ZP_03702936.1| recA protein [Flavobacteria bacterium MS024-2A]
 gi|225003477|gb|EEG41451.1| recA protein [Flavobacteria bacterium MS024-2A]
          Length = 335

 Score =  431 bits (1109), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/318 (65%), Positives = 259/318 (81%), Gaps = 3/318 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+  L ++ + YGKGA+M+LG + +I E +E +SSGS+GLDIALG+GG+P+GR++E
Sbjct: 8   KQKALQLTLDKLDKTYGKGAVMRLGDE-AIVE-VESISSGSIGLDIALGVGGYPRGRVIE 65

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA+ QK+GG  AF+DAEHA D  YA KLGVD+  L+ISQPD GE
Sbjct: 66  IYGPESSGKTTLTLHAIAECQKSGGIAAFIDAEHAFDRFYAEKLGVDVGELIISQPDHGE 125

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RSGA+DI+VIDSVAALTP++EIEG+MG+S  G+ ARLMSQALRKLT SIS
Sbjct: 126 QALEIADNLIRSGAIDIVVIDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTGSIS 185

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-ITGNQT 250
           ++ C + FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IK+ +S + GN+T
Sbjct: 186 KTNCTVFFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKNTESEVLGNKT 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+  EFDIMYGEGIS  GE+IDLGV   I+ KSG+WFS+   ++GQGR
Sbjct: 246 RVKVVKNKVAPPFRTTEFDIMYGEGISKIGEIIDLGVNYEIIKKSGSWFSYGDTKIGQGR 305

Query: 311 ENSKIFLRENIEIAENIE 328
           +  K  L +N E+ + +E
Sbjct: 306 DAVKTLLEDNPELMDELE 323


>gi|2760914|gb|AAC38570.1| RecA protein [Chloroflexus aurantiacus J-10-fl]
          Length = 351

 Score =  431 bits (1109), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/343 (59%), Positives = 268/343 (78%), Gaps = 3/343 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL A ++QI R +GKG+IM++G   S    IE + +GS+ LDIALGIGG P+GR+V
Sbjct: 6   EKEKALAATMAQIDRKFGKGSIMKMGEASSRV-AIEAIPTGSIALDIALGIGGVPRGRVV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTLA H IA++QK GG CAF+DAEHA D +YA + GV++ +LL+SQPDTG
Sbjct: 65  EIFGPESSGKTTLAQHIIAEAQKMGGVCAFIDAEHAFDPVYAARCGVNIDDLLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI +MLVRS A+D+IVIDSVAAL PRAEIEG+MG+S+PGMQARLMSQALRKL+ +I
Sbjct: 125 EQALEICEMLVRSNAIDVIVIDSVAALVPRAEIEGEMGDSMPGMQARLMSQALRKLSGAI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S+ +++FINQ+RMKIGVM G+PETTTGG ALKFY+SVRLDIRRV ++K      G++ 
Sbjct: 185 SKSRTVVIFINQLRMKIGVMLGTPETTTGGQALKFYTSVRLDIRRVETLKQGQEAIGSRV 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV+KNK+A P++Q EFDI+  EGIS  G +ID+G +  I+ KSGAWF     RLGQGR
Sbjct: 245 RVKVIKNKVAPPYRQAEFDILANEGISREGNIIDIGTELGIIRKSGAWFYLGEDRLGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           EN + FL+ N  + + IE L++  A  + +  +  P+++  DD
Sbjct: 305 ENVREFLKNNPALTDEIERLIKAQA--LTNPTVIAPSVDVGDD 345


>gi|224283395|ref|ZP_03646717.1| recombinase A [Bifidobacterium bifidum NCIMB 41171]
 gi|313140550|ref|ZP_07802743.1| protein recA [Bifidobacterium bifidum NCIMB 41171]
 gi|313133060|gb|EFR50677.1| protein recA [Bifidobacterium bifidum NCIMB 41171]
          Length = 396

 Score =  431 bits (1109), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 200/327 (61%), Positives = 265/327 (81%), Gaps = 2/327 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL++AL Q+++ +GKG+ M+LG +    + +EV+ +GSL LD+ALGIGG PKGRIVE
Sbjct: 37  RKAALDSALEQVEKSFGKGSAMRLGDKPE--QNVEVIPTGSLALDLALGIGGLPKGRIVE 94

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH +A +QK GG  AF+DAEHALD +YAR LGVD  +L++SQPD GE
Sbjct: 95  IYGPESSGKTTLALHVVANAQKNGGVAAFIDAEHALDPVYARHLGVDTDSLIVSQPDNGE 154

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DML+RSGA+D+IVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRK+T +++
Sbjct: 155 QALEIADMLIRSGALDVIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKMTGALA 214

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLDIRR+ +IK+ +   GN+T+
Sbjct: 215 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDIRRIQTIKNGEEAVGNRTK 274

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNKMA PFK  EFD++YGEGIS  G ++D+ ++ ++V KSG+WF++ G +LGQGRE
Sbjct: 275 VKVVKNKMAPPFKSAEFDVLYGEGISKEGSVLDMALQCNVVKKSGSWFTYDGDQLGQGRE 334

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLV 338
           N + FL++N +I E I + ++   GL+
Sbjct: 335 NVRKFLKDNPQITEEIGNKVKAEFGLI 361


>gi|67809947|gb|AAY81982.1| recombinase A [Wolbachia pipientis]
          Length = 304

 Score =  431 bits (1109), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 201/297 (67%), Positives = 256/297 (86%), Gaps = 2/297 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+ A+SQI++ +GKGAIM+L  + +  E I+ +S+GS+ LD ALG+GG PKGRI+
Sbjct: 10  DKQKALDNAISQIEKAFGKGAIMKL--KQNPVEKIDTISTGSIALDSALGVGGLPKGRII 67

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTLALH IA++QK GG+CAF+DAEHALD +YARKLGV   +L+ISQPDTG
Sbjct: 68  EIFGPESSGKTTLALHVIAEAQKKGGSCAFIDAEHALDVLYARKLGVSTDDLVISQPDTG 127

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL I + LV SGAVD+IVIDSVAALTPRAEIEGDMG+   G+QARL+S  LRKLTS++
Sbjct: 128 EQALHIVEYLVCSGAVDVIVIDSVAALTPRAEIEGDMGDQHMGLQARLLSHGLRKLTSAV 187

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++ CIL+FINQ+RMKIGV++G+PETTTGGNALKFY+SVRLDIR++G IKDK++ITGN+T
Sbjct: 188 SKANCILIFINQIRMKIGVVYGNPETTTGGNALKFYTSVRLDIRKIGVIKDKENITGNET 247

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           RVKVVKNK+A PF++ +FDIMY EGIS  GE+ID+G K  +++K+GA++S+   RLG
Sbjct: 248 RVKVVKNKVAPPFREAKFDIMYNEGISKLGEIIDMGAKLGVLEKAGAYYSYNNTRLG 304


>gi|242133656|gb|ACS87939.1| RecA [Burkholderia cepacia]
          Length = 345

 Score =  431 bits (1109), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 213/329 (64%), Positives = 270/329 (82%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG IM +G  G + E I+VVS GSLGLDIALG+GG P+G +V
Sbjct: 3   EKSKALAAALAQIEKQFGKGLIMWMGD-GEVAEDIQVVSMGSLGLDIALGVGGLPRGWVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPE SGKTTL L  IA+ QK GGT  F+DAEHALD  Y  KLGV++  LLISQPDTG
Sbjct: 62  EIYGPELSGKTTLTLQVIAELQKIGGTAVFIDAEHALDVQYVSKLGVNVPELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG VD+IVID VAA   +AEIEG+MG+SLPG+QA LMSQALRKLTS+I
Sbjct: 122 EQALEITDALVRSGLVDMIVIDLVAAFVLKAEIEGEMGDSLPGLQACLMSQALRKLTSTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIG+MF +PETTTG N LKFY+SVRLDIRR+GSIK  + +  N+T
Sbjct: 182 KRTNCLVIFINQIRMKIGMMFSNPETTTGSNTLKFYASVRLDIRRIGSIKKNNEVISNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  G++I+L V+A IVDK+GAW+S+  +++GQG+
Sbjct: 242 RVKVVKNKVSPPFRKAIFDILYGEGISRQGKIINLSVQAKIVDKAGAWYSYNSEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++  +VA
Sbjct: 302 DNAREFLRENPEIAREIENHIRESLSIVA 330


>gi|91217991|ref|ZP_01254943.1| recombinase A [Psychroflexus torquis ATCC 700755]
 gi|91183849|gb|EAS70240.1| recombinase A [Psychroflexus torquis ATCC 700755]
          Length = 340

 Score =  431 bits (1109), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/318 (63%), Positives = 259/318 (81%), Gaps = 3/318 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+  L ++ + YGKG +M++  Q    + IE +SSGSLGL++ALG+GG+P+GR+VE
Sbjct: 11  KLKALQLTLDKLDKTYGKGTVMKMSDQA--VQDIEAISSGSLGLNLALGVGGYPRGRVVE 68

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH IA++QK GG  AF+DAEHA D  YA+ L +D+ NL+ISQPD GE
Sbjct: 69  IYGPESSGKTTLALHAIAEAQKAGGIAAFIDAEHAFDRTYAKNLNIDIDNLIISQPDHGE 128

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEIT+ L+RSGA+DIIVIDSVAALTP++EIEG+MG+S  G+ ARLMSQALRK+TS+IS
Sbjct: 129 QALEITENLIRSGAIDIIVIDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKMTSTIS 188

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-ITGNQT 250
           ++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IK+ +S + GN+T
Sbjct: 189 KTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKNSNSDVLGNKT 248

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK  EFDIMYG G+S  GE+ID+GV   I+ K+G+WFS++  +LGQGR
Sbjct: 249 RVKVVKNKVAPPFKMAEFDIMYGTGVSKIGEIIDIGVDYEIIKKAGSWFSYEETKLGQGR 308

Query: 311 ENSKIFLRENIEIAENIE 328
           +  K  L +N E+ E +E
Sbjct: 309 DAVKTLLLDNPELMEELE 326


>gi|325265014|ref|ZP_08131741.1| protein RecA [Clostridium sp. D5]
 gi|324029704|gb|EGB90992.1| protein RecA [Clostridium sp. D5]
          Length = 370

 Score =  431 bits (1109), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 196/327 (59%), Positives = 266/327 (81%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KALEAA++++++ +GKG +M+LG  G+    +E V +G L LD+ALG+GG PKGR++
Sbjct: 7   DKKKALEAAIAKLEKDFGKGTVMKLGEPGAHV-AVETVPTGCLSLDLALGLGGVPKGRVI 65

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GG   FVDAEHALD +YA+ +GVD+  L ISQPD+G
Sbjct: 66  EVYGPESSGKTTVALHMIAEVQKRGGIAGFVDAEHALDPVYAKSIGVDIDELYISQPDSG 125

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           +QALEIT+ +VRSGA+DIIVIDSVAAL PR EIEGDMG+S  G+QARLMSQALRKLT  I
Sbjct: 126 DQALEITETMVRSGAIDIIVIDSVAALVPRQEIEGDMGDSHVGLQARLMSQALRKLTPVI 185

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S C+++FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+D+RR+ ++K    + GN+T
Sbjct: 186 SKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASVRMDVRRIETLKQSGEMVGNRT 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+K+VKNK+A PFK+ EFDIM+G+GIS  G+++DL     +V KSGAW++++G+++GQGR
Sbjct: 246 RIKIVKNKIAPPFKEAEFDIMFGKGISKEGDILDLAAGIDVVKKSGAWYAYEGEKIGQGR 305

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K +L E+ E+ E ++  +R +  L
Sbjct: 306 ENAKAYLTEHPEVMEELDRKVRAHYKL 332


>gi|294498505|ref|YP_003562205.1| RecA1 protein [Bacillus megaterium QM B1551]
 gi|294348442|gb|ADE68771.1| RecA1 protein [Bacillus megaterium QM B1551]
          Length = 341

 Score =  431 bits (1109), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/317 (65%), Positives = 257/317 (81%), Gaps = 2/317 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK  AL+ AL QI++ +G G+I+++G        +E  SSGSL LDIALGI G+PKGRI+
Sbjct: 3   DKKAALDMALKQIEKQFGTGSIIKMGE--GTHTKVEASSSGSLALDIALGINGYPKGRIM 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT++LH IA+ QK GG  AF+DAEHALD +YARKLGVD+  LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVSLHAIAEVQKNGGRAAFIDAEHALDPVYARKLGVDIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDIIV+DSVAAL P+ EIEG+MG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQALEIAEALVRSGAVDIIVVDSVAALVPQKEIEGEMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K  + I GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKLGNDIVGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNKMA PF+  E DIMYGEGIS  GE++D+G +  IV KSG+WFS+  +RLGQGR
Sbjct: 241 RIKVVKNKMAPPFRIAEVDIMYGEGISKEGEILDIGSEVDIVQKSGSWFSYNEERLGQGR 300

Query: 311 ENSKIFLRENIEIAENI 327
           EN+KIFL+EN EI E I
Sbjct: 301 ENAKIFLKENPEIREEI 317


>gi|308235288|ref|ZP_07666025.1| recombinase A [Gardnerella vaginalis ATCC 14018]
 gi|311114751|ref|YP_003985972.1| recombination protein A [Gardnerella vaginalis ATCC 14019]
 gi|310946245|gb|ADP38949.1| recombination protein A [Gardnerella vaginalis ATCC 14019]
          Length = 384

 Score =  431 bits (1108), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 199/327 (60%), Positives = 264/327 (80%), Gaps = 2/327 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  ALE AL+ +++ YGKG+ M+LG +    + +EV+ +GS+ LD+ALGIGG P+GRIVE
Sbjct: 23  RKAALETALANVEKQYGKGSAMRLGDKP--LQDVEVIPTGSIALDMALGIGGVPRGRIVE 80

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTLALH +A +QK GG  AF+DAEHALD +YARKLGVD  +L++SQPD GE
Sbjct: 81  VYGPESSGKTTLALHIVANAQKNGGIAAFIDAEHALDPVYARKLGVDTDSLIVSQPDNGE 140

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DML+RSGA+D+IV+DSVAAL P+AEI+GDMG+S  G+QARLMSQALRK+T ++S
Sbjct: 141 QALEIADMLIRSGALDVIVVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKMTGALS 200

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGV FG+PETTTGG ALKFYSSVR+DIRRV +IK+ +   GN+T+
Sbjct: 201 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYSSVRMDIRRVSTIKNGEEAVGNRTK 260

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNKMA PFK  EFD++YGEGIS  G +ID+ V+  ++ KSG+WF+++G++LGQGRE
Sbjct: 261 VKIVKNKMAPPFKTAEFDVLYGEGISTEGSVIDMAVQCDVIKKSGSWFTYEGEQLGQGRE 320

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLV 338
           N + FL++N  I E I   ++   GL+
Sbjct: 321 NVRQFLKDNPAITEEISDKVKVAFGLM 347


>gi|291516744|emb|CBK70360.1| RecA protein [Bifidobacterium longum subsp. longum F8]
          Length = 418

 Score =  431 bits (1108), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/327 (61%), Positives = 263/327 (80%), Gaps = 2/327 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL+Q+++ +GKG+ M+LG Q    + +EV+ +GSL LD+ALGIGG PKGRIVE
Sbjct: 44  RKAALDTALAQVEKSFGKGSAMRLGDQPE--QNVEVIPTGSLALDMALGIGGLPKGRIVE 101

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH +A +QK GG  A++DAEHALD  YARKLGVD  +L++SQPD GE
Sbjct: 102 IYGPESSGKTTLALHVVANAQKKGGVAAYIDAEHALDPAYARKLGVDTDSLIVSQPDNGE 161

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T +++
Sbjct: 162 QALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALA 221

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLDIRR+ ++K+ D   GN+TR
Sbjct: 222 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDIRRIQTLKNGDEAVGNRTR 281

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNKMA PFK  EFD++YGEGIS  G +ID+  +  +V KSG+WF+++G +LGQGRE
Sbjct: 282 VKVVKNKMAPPFKSAEFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTYEGDQLGQGRE 341

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLV 338
             + FL++N  I E IE+ ++   GL+
Sbjct: 342 KVRQFLKDNPAITEEIENKVKAEFGLI 368


>gi|38234031|ref|NP_939798.1| recombinase A [Corynebacterium diphtheriae NCTC 13129]
 gi|60392992|sp|P62213|RECA_CORDI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|38200293|emb|CAE49978.1| Recombinase A [Corynebacterium diphtheriae]
          Length = 372

 Score =  431 bits (1108), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 213/348 (61%), Positives = 270/348 (77%), Gaps = 7/348 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+AAL+ I++ +GKGA+M+LG +      I  +SSG+  +D+ALGIGGFP+GRIV
Sbjct: 16  NRKKALDAALAMIEKDFGKGAVMRLGDENR--PPISAISSGNTAIDVALGIGGFPRGRIV 73

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IAQ+QK GG  AF+DAEHALD  YARKLGVD   LL+SQPDTG
Sbjct: 74  EVYGPESSGKTTVALHAIAQAQKAGGIAAFIDAEHALDPDYARKLGVDTDALLVSQPDTG 133

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DIIVIDSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 134 EQALEIADMLVRSGAIDIIVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 193

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR D+RR+ ++KD     GN+T
Sbjct: 194 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDVRRIQTLKDGQDAIGNRT 253

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK++ PFK  EFDIMYGEGIS    +IDLGV   I+ KSG+WF+++G +LGQG+
Sbjct: 254 RLKVVKNKVSPPFKIAEFDIMYGEGISRESSIIDLGVDNGIIKKSGSWFTYEGDQLGQGK 313

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           E  +++L+E  E+A+ IE  +       A  + +  A+   DDA  DD
Sbjct: 314 EKVRLYLKETPELADEIEDKI-----FRALHIGKYAALKDADDALTDD 356


>gi|319441560|ref|ZP_07990716.1| recombinase A [Corynebacterium variabile DSM 44702]
          Length = 379

 Score =  431 bits (1108), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/318 (63%), Positives = 264/318 (83%), Gaps = 2/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+ A++QI++ YGKGA+M+LG        I+V+ SG++ +++ALGIGGFP+GRIV
Sbjct: 14  DRQKALDLAMAQIEKDYGKGAVMRLGDDER--PPIQVIPSGNIAINVALGIGGFPRGRIV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA++QK GG  AF+DAEHALD  YA+KLGVD  NLL+SQPDTG
Sbjct: 72  EIYGPESSGKTTVALHAIAEAQKAGGIAAFIDAEHALDPEYAKKLGVDTDNLLVSQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+ +IV+DSVAALTP+AEIEGDMG+S  G+QARLMSQALRK+T ++
Sbjct: 132 EQALEIADMLVRSGAISVIVVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKMTGAL 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR D+RR+ ++KD     GN+T
Sbjct: 192 SQTGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDVRRIQTLKDGQDAVGNRT 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++K+VKNK++ PFK  EFDI+YGEGIS  G +IDLGV+  +V KSG+W+++KG +LGQG+
Sbjct: 252 KMKIVKNKVSPPFKIAEFDIVYGEGISREGSIIDLGVENGLVKKSGSWYTYKGDQLGQGK 311

Query: 311 ENSKIFLRENIEIAENIE 328
           E ++ FL+E+ E++  IE
Sbjct: 312 EKAREFLKESPELSAEIE 329


>gi|47678134|emb|CAF21830.1| RecA recombinase [Enterococcus columbae]
          Length = 349

 Score =  431 bits (1108), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 201/327 (61%), Positives = 263/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ +GKGAIM+LG +    + I  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKAALDAALKKIEKNFGKGAIMKLGEKAD--QQISTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPAYAKKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVD+IVIDSVAAL PRAEI+G+MG++  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDVIVIDSVAALVPRAEIDGEMGDTHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATIRLEVRRSEQLKSGTDIIGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYGEGIS  GEL+D+ V   I+DKSGAW+S+KG R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKTAEIDIMYGEGISQEGELLDMAVDVDIIDKSGAWYSYKGDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN K +++E+ E+   + +L+R   G+
Sbjct: 302 ENVKNYMKEHPEMVAEVSALVRNAYGI 328


>gi|327313993|ref|YP_004329430.1| RecA protein [Prevotella denticola F0289]
 gi|326944063|gb|AEA19948.1| RecA protein [Prevotella denticola F0289]
          Length = 341

 Score =  431 bits (1108), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 210/322 (65%), Positives = 267/322 (82%), Gaps = 2/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+AA+S+I++ +GKG+IM++G +    E +EV+ +GS+ LD ALG+GG+P+GRI+E
Sbjct: 15  KLKALQAAMSKIEKDFGKGSIMRMGDEQ--IENVEVIPTGSVALDTALGVGGYPRGRIIE 72

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD GE
Sbjct: 73  IYGPESSGKTTLAIHAIAEAQKQGGIAAFIDAEHAFDRFYAEKLGVDVDNLWISQPDNGE 132

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RS A+DI+V+DSVAALTP+ EIEGDMG+S  G+QARLMSQALRKLTS+IS
Sbjct: 133 QALEIADQLIRSSAIDILVVDSVAALTPKKEIEGDMGDSAVGLQARLMSQALRKLTSTIS 192

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGVMFG+PETTTGGNALKFYSSVRLDIRRV SIKD D + GNQ R
Sbjct: 193 KTNTCCIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRVTSIKDGDQVIGNQVR 252

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF++ EF+I +GEGIS  GE++DLGV+  I+ KSG+WFS+ G RL QGR+
Sbjct: 253 VKVVKNKVAPPFRKAEFEITFGEGISKIGEIVDLGVQYGIIQKSGSWFSYNGTRLAQGRD 312

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
            +K  +++N E+AE +E L++Q
Sbjct: 313 ATKTMIKDNPELAEELEGLIKQ 334


>gi|189183947|ref|YP_001937732.1| RecA protein [Orientia tsutsugamushi str. Ikeda]
 gi|189180718|dbj|BAG40498.1| RecA protein [Orientia tsutsugamushi str. Ikeda]
          Length = 356

 Score =  431 bits (1108), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 203/332 (61%), Positives = 273/332 (82%), Gaps = 2/332 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K   L+  LS I + +GKG+IM+  +Q  I +  +V+SSGS+ +D ALGIGGFPKGR+ E
Sbjct: 3   KEHTLDDVLSIINKTHGKGSIMRC-NQRPIGKA-QVISSGSVCIDTALGIGGFPKGRVSE 60

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPE+SGKTT+ALH +A+ QK G +C ++DAEHALD  YA+KLGV++ +L+ISQPDTGE
Sbjct: 61  IYGPEASGKTTVALHAVAECQKGGESCVYIDAEHALDLQYAQKLGVNINSLIISQPDTGE 120

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSGAV +IV+DSVAAL P+AE+EG++G++  G+QARLMSQALRKL +S+S
Sbjct: 121 QALEIADTLVRSGAVGLIVVDSVAALVPKAELEGEIGDNNIGLQARLMSQALRKLVASVS 180

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++ C ++FINQ+RMKIG+MFGSPETTTGGNALKFY+S+R++IR+V  IKDK+ + G QT+
Sbjct: 181 KTNCTIIFINQIRMKIGIMFGSPETTTGGNALKFYASIRMEIRKVSPIKDKEEVIGYQTK 240

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNK+A PFK V+FDI+YG GIS  GE+IDLGVK  I++K+GAWFS+K  ++GQGRE
Sbjct: 241 VKIVKNKLAPPFKVVDFDIIYGLGISKEGEIIDLGVKLGIIEKAGAWFSYKDHKIGQGRE 300

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLL 343
           N+K +LRE+  IA  +E  +RQ + ++ +SL+
Sbjct: 301 NAKQYLREHPSIALELEQQIRQKSDIIQNSLV 332


>gi|300858671|ref|YP_003783654.1| recombinase A [Corynebacterium pseudotuberculosis FRC41]
 gi|1350560|sp|P48288|RECA_CORP2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|1098613|gb|AAA82608.1| RecA [Corynebacterium pseudotuberculosis]
 gi|300686125|gb|ADK29047.1| recombinase A [Corynebacterium pseudotuberculosis FRC41]
 gi|302206378|gb|ADL10720.1| Recombinase A [Corynebacterium pseudotuberculosis C231]
 gi|302330934|gb|ADL21128.1| Recombinase A [Corynebacterium pseudotuberculosis 1002]
 gi|308276621|gb|ADO26520.1| Recombinase A [Corynebacterium pseudotuberculosis I19]
          Length = 369

 Score =  431 bits (1108), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/361 (59%), Positives = 270/361 (74%), Gaps = 18/361 (4%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+AAL+ I++ +GKGA+M+LG        I  +SSG+  +D+ALGIGGFPKGRIV
Sbjct: 16  NRQKALDAALAMIEKDFGKGAVMRLGDDNR--PPISAISSGNTAIDVALGIGGFPKGRIV 73

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IAQ+Q+ GG  AF+DAEHALD  YARKLGVD   LL+SQPDTG
Sbjct: 74  EVYGPESSGKTTVALHAIAQAQRAGGIAAFIDAEHALDPDYARKLGVDTDALLVSQPDTG 133

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DIIVIDSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 134 EQALEIADMLVRSGAIDIIVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 193

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR D+RR+ ++KD     GN+T
Sbjct: 194 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDVRRIQTLKDGQDAIGNRT 253

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK++ PFK  EFDIMYGEGIS    +IDLGV   I+ KSG+WF++ G +LGQG+
Sbjct: 254 RLKVVKNKVSPPFKIAEFDIMYGEGISRESSIIDLGVDNGIIKKSGSWFTYDGDQLGQGK 313

Query: 311 ENSKIFLRENIEIAENIESLL----------RQNAGLVADSLLQEPAINTKDDADKDDTD 360
           E  +++L++  E+A+ IE  +           QN  L  D +   P I      D DD D
Sbjct: 314 EKVRLYLKQTPELADEIEEKIFRALQIGKYANQNDALTDDPVDMVPNI------DFDDED 367

Query: 361 N 361
           N
Sbjct: 368 N 368


>gi|295108291|emb|CBL22244.1| protein RecA [Ruminococcus obeum A2-162]
          Length = 347

 Score =  431 bits (1108), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 209/322 (64%), Positives = 264/322 (81%), Gaps = 1/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALEAAL  I++ YGKG++M+LG   S    +E V +GSLGLDIALG+GG PKGRIV
Sbjct: 5   EKQKALEAALGHIEKQYGKGSVMKLGDSSSNMV-VEAVPTGSLGLDIALGVGGVPKGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YA+ +GVD+ NL ISQPD G
Sbjct: 64  EIYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ +VRSGAVDI+++DSVAAL P+AEIEGDMG+S  G+ ARLMSQALRKLT++I
Sbjct: 124 EQALEITETMVRSGAVDIVIVDSVAALVPKAEIEGDMGDSHVGLHARLMSQALRKLTAAI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SRS C+++FINQ+R K+GVMFG+PETTTGG ALKFY+SVRLD+RR  ++K    + GN  
Sbjct: 184 SRSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASVRLDVRRTETLKQGGEMVGNHV 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PFKQ EFDIM+G GIS  GE++DL  + ++V+KSGAW+S+ G R+GQGR
Sbjct: 244 KVKVVKNKVAPPFKQAEFDIMFGTGISREGEILDLAAECNVVNKSGAWYSYNGDRIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           EN KIFL+++ +I E IE  +R
Sbjct: 304 ENVKIFLKDHPDICEEIEKKVR 325


>gi|86131029|ref|ZP_01049628.1| protein RecA [Dokdonia donghaensis MED134]
 gi|85818440|gb|EAQ39600.1| protein RecA [Dokdonia donghaensis MED134]
          Length = 335

 Score =  431 bits (1108), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 200/319 (62%), Positives = 259/319 (81%), Gaps = 3/319 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+  L ++ + YGKGA+M++G Q  +   +E + +GSLGLD+ALG+GG+P+GR++E
Sbjct: 8   KLKALKLTLDKLDKTYGKGAVMKMGDQAIV--DVESIPTGSLGLDVALGVGGYPRGRVIE 65

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA++QK GG  AF+DAEHA D  YA KL VD+ NL+ISQPD GE
Sbjct: 66  IYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAEHAFDRFYAEKLDVDIDNLIISQPDNGE 125

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RSGA+DI+VIDSVAALTP++EIEG+MG+S  G+ ARLMSQALRKLT SIS
Sbjct: 126 QALEIADNLIRSGAIDIVVIDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTGSIS 185

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-ITGNQT 250
           ++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IKD ++ + GN+T
Sbjct: 186 KTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKDSNANVMGNKT 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PF+  EFDIMYGEG+S  GE+ID+GV   I+ K+G+WFS++  +LGQGR
Sbjct: 246 RVKIVKNKVAPPFRMAEFDIMYGEGVSKVGEIIDIGVNYEIIKKAGSWFSYQDTKLGQGR 305

Query: 311 ENSKIFLRENIEIAENIES 329
           +  K  L +N ++ E +E+
Sbjct: 306 DAVKALLLDNPDLMEELET 324


>gi|31540561|gb|AAP49243.1| RecA [Mycobacterium phlei]
          Length = 321

 Score =  431 bits (1108), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 201/318 (63%), Positives = 261/318 (82%), Gaps = 2/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE AL+ I++ +GKG+ M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 6   DREKALELALAHIEKNHGKGSGMRLGEE--VHQPISVIPTGSIALDVALGIGGLPRGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+T
Sbjct: 184 SNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTEAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK++ PFKQ EFDI+YG GIS  G LID+GV+   + KSG+WF+++G++LGQG+
Sbjct: 244 RVKIVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIE 328
           EN++ FL EN ++A  IE
Sbjct: 304 ENARNFLLENPDVANEIE 321


>gi|149369483|ref|ZP_01889335.1| DNA recombination protein [unidentified eubacterium SCB49]
 gi|149356910|gb|EDM45465.1| DNA recombination protein [unidentified eubacterium SCB49]
          Length = 338

 Score =  431 bits (1108), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/322 (63%), Positives = 262/322 (81%), Gaps = 3/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+  L ++ + YGKG +M++G +  + E ++V+SSGSLGLD+ALG+GG+P+GR++E
Sbjct: 10  KLKALKLTLDKLDKTYGKGTVMKMGDR-QVVE-VDVISSGSLGLDVALGVGGYPRGRVIE 67

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA++QK GG  AF+DAEHA D  YA  LGVD++NL+ISQPD GE
Sbjct: 68  IYGPESSGKTTLTLHAIAEAQKKGGIAAFIDAEHAFDRYYAESLGVDIENLIISQPDNGE 127

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RSGA+DI+V+DSVAALTP++EIEG+MG+S  G+ ARLMSQALRKLT SIS
Sbjct: 128 QALEIADNLIRSGAIDIVVVDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTGSIS 187

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-ITGNQT 250
           ++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IKD DS + GN+T
Sbjct: 188 KTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKDTDSNVMGNKT 247

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK  EFDIMYG+GIS  GE+IDLGV   I+ K+G+WFS+   +LGQGR
Sbjct: 248 RVKVVKNKVAPPFKLAEFDIMYGKGISKVGEIIDLGVNFEIIRKAGSWFSYDETKLGQGR 307

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           +  K  L +N E+ + +E  ++
Sbjct: 308 DAVKNLLLDNPELMDELEGKIK 329


>gi|227503439|ref|ZP_03933488.1| recombination protein RecA [Corynebacterium accolens ATCC 49725]
 gi|227075942|gb|EEI13905.1| recombination protein RecA [Corynebacterium accolens ATCC 49725]
          Length = 378

 Score =  431 bits (1108), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/327 (63%), Positives = 262/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+AA++ I++ YGKGA+M+LG        I+ +SSG+  +D+ALGIGGFP+GRIV
Sbjct: 16  DRQKALDAAMAMIEKDYGKGAVMRLGDDDR--PPIKAISSGNTAIDVALGIGGFPRGRIV 73

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA +QK GG  AF+DAEHALD  YAR LGVD  NLL+SQPDTG
Sbjct: 74  EIYGPESSGKTTVALHAIASAQKDGGIAAFIDAEHALDPQYARLLGVDTDNLLVSQPDTG 133

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DIIV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 134 EQALEIADMLVRSGAIDIIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 193

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVR DIRR+ ++KD     GN+T
Sbjct: 194 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRCDIRRIQTLKDGQDAIGNRT 253

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK++ PFK  EFDIMYGEGIS    +IDLGV+   + KSG+WF+++G +LGQG+
Sbjct: 254 KLKVVKNKVSPPFKIAEFDIMYGEGISRESSIIDLGVENGFIRKSGSWFTYEGDQLGQGK 313

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           E ++ FL++N ++A  IE  + Q  G+
Sbjct: 314 EKARSFLKDNSDLANEIEKKIFQKLGI 340


>gi|312132580|ref|YP_003999919.1| reca [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773522|gb|ADQ03010.1| RecA [Bifidobacterium longum subsp. longum BBMN68]
          Length = 418

 Score =  431 bits (1108), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/327 (61%), Positives = 263/327 (80%), Gaps = 2/327 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL+Q+++ +GKG+ M+LG Q    + +EV+ +GSL LD+ALGIGG PKGRIVE
Sbjct: 44  RKAALDTALAQVEKSFGKGSAMRLGDQPE--QNVEVIPTGSLALDMALGIGGLPKGRIVE 101

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH +A +QK GG  A++DAEHALD  YARKLGVD  +L++SQPD GE
Sbjct: 102 IYGPESSGKTTLALHVVANAQKKGGVSAYIDAEHALDPAYARKLGVDTDSLIVSQPDNGE 161

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T +++
Sbjct: 162 QALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALA 221

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLDIRR+ ++K+ D   GN+TR
Sbjct: 222 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDIRRIQTLKNGDEAVGNRTR 281

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNKMA PFK  EFD++YGEGIS  G +ID+  +  +V KSG+WF+++G +LGQGRE
Sbjct: 282 VKVVKNKMAPPFKSAEFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTYEGDQLGQGRE 341

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLV 338
             + FL++N  I E IE+ ++   GL+
Sbjct: 342 KVRQFLKDNPAITEEIENKVKAEFGLI 368


>gi|213691840|ref|YP_002322426.1| recA protein [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213523301|gb|ACJ52048.1| recA protein [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320457935|dbj|BAJ68556.1| recombinase RecA [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 418

 Score =  431 bits (1108), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/327 (61%), Positives = 263/327 (80%), Gaps = 2/327 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL+Q+++ +GKG+ M+LG Q    + +EV+ +GSL LD+ALGIGG PKGRIVE
Sbjct: 44  RKAALDTALAQVEKSFGKGSAMRLGDQPE--QNVEVIPTGSLALDMALGIGGLPKGRIVE 101

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH +A +QK GG  A++DAEHALD  YARKLGVD  +L++SQPD GE
Sbjct: 102 IYGPESSGKTTLALHVVANAQKKGGVAAYIDAEHALDPAYARKLGVDTDSLIVSQPDNGE 161

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T +++
Sbjct: 162 QALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALA 221

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLDIRR+ ++K+ D   GN+TR
Sbjct: 222 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDIRRIQTLKNGDEAVGNRTR 281

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNKMA PFK  EFD++YGEGIS  G +ID+  +  +V KSG+WF+++G +LGQGRE
Sbjct: 282 VKVVKNKMAPPFKSAEFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTYEGDQLGQGRE 341

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLV 338
             + FL++N  I E IE+ ++   GL+
Sbjct: 342 KVRQFLKDNPAITEEIENKVKAEFGLI 368


>gi|46191337|ref|ZP_00206783.1| COG0468: RecA/RadA recombinase [Bifidobacterium longum DJO10A]
 gi|189439147|ref|YP_001954228.1| recombinase A [Bifidobacterium longum DJO10A]
 gi|227547654|ref|ZP_03977703.1| recombination protein A [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|317482460|ref|ZP_07941477.1| recA bacterial DNA recombination protein [Bifidobacterium sp.
           12_1_47BFAA]
 gi|322689410|ref|YP_004209144.1| recombinase RecA [Bifidobacterium longum subsp. infantis 157F]
 gi|322691377|ref|YP_004220947.1| recombinase RecA [Bifidobacterium longum subsp. longum JCM 1217]
 gi|189427582|gb|ACD97730.1| RecA/RadA recombinase [Bifidobacterium longum DJO10A]
 gi|227211909|gb|EEI79805.1| recombination protein A [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|316916120|gb|EFV37525.1| recA bacterial DNA recombination protein [Bifidobacterium sp.
           12_1_47BFAA]
 gi|320456233|dbj|BAJ66855.1| recombinase RecA [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320460746|dbj|BAJ71366.1| recombinase RecA [Bifidobacterium longum subsp. infantis 157F]
          Length = 418

 Score =  431 bits (1108), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/327 (61%), Positives = 263/327 (80%), Gaps = 2/327 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL+Q+++ +GKG+ M+LG Q    + +EV+ +GSL LD+ALGIGG PKGRIVE
Sbjct: 44  RKAALDTALAQVEKSFGKGSAMRLGDQPE--QNVEVIPTGSLALDMALGIGGLPKGRIVE 101

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH +A +QK GG  A++DAEHALD  YARKLGVD  +L++SQPD GE
Sbjct: 102 IYGPESSGKTTLALHVVANAQKKGGVAAYIDAEHALDPAYARKLGVDTDSLIVSQPDNGE 161

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T +++
Sbjct: 162 QALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALA 221

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLDIRR+ ++K+ D   GN+TR
Sbjct: 222 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDIRRIQTLKNGDEAVGNRTR 281

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNKMA PFK  EFD++YGEGIS  G +ID+  +  +V KSG+WF+++G +LGQGRE
Sbjct: 282 VKVVKNKMAPPFKSAEFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTYEGDQLGQGRE 341

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLV 338
             + FL++N  I E IE+ ++   GL+
Sbjct: 342 KVRQFLKDNPAITEEIENKVKAEFGLI 368


>gi|288922647|ref|ZP_06416823.1| recA protein [Frankia sp. EUN1f]
 gi|288346005|gb|EFC80358.1| recA protein [Frankia sp. EUN1f]
          Length = 349

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/327 (62%), Positives = 261/327 (79%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE AL+QI + +GKG++M+LG        I+ + +GS+ LD+ALGIGG P+GRIV
Sbjct: 5   DREKALENALAQIDKQFGKGSVMRLGD--DTRPPIQAIPTGSIALDVALGIGGLPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA KLGVD   LL+SQPDTG
Sbjct: 63  EVYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAGKLGVDTDALLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 123 EQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGAL 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+T
Sbjct: 183 ANSGTTAIFINQLREKVGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGQEAVGNRT 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PF+  EFDI+YG GIS  G LID+GV+  I+ KSGAW+++ G +LGQG+
Sbjct: 243 RVKVVKNKMAPPFRTAEFDIVYGGGISREGSLIDMGVEHGIIRKSGAWYTYDGDQLGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN++ FLR+N ++A  IE  +++  G+
Sbjct: 303 ENARSFLRDNPDLANEIEKRIKEKLGI 329


>gi|313202686|ref|YP_004041343.1| reca protein [Paludibacter propionicigenes WB4]
 gi|312442002|gb|ADQ78358.1| RecA protein [Paludibacter propionicigenes WB4]
          Length = 340

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 200/319 (62%), Positives = 262/319 (82%), Gaps = 2/319 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+ A+ +I++ +GKG IM++G   +  E +  +S+GS+GL++ALG+GG+P+GR++
Sbjct: 15  DKLKALQLAMDKIEKDHGKGTIMRMGD--TKVEDVAFISTGSIGLNVALGVGGYPRGRVI 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLA+H IA++QK GG  A +DAEHA D  YA KLGV++  LLISQPD G
Sbjct: 73  EIYGPESSGKTTLAIHAIAEAQKAGGIAAIIDAEHAFDRFYAEKLGVNIDELLISQPDNG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L+RS AVDI+VIDSVAALTP+AE+EGDMG+S  G+QARLMSQALRKLT++I
Sbjct: 133 EQALEIADQLIRSSAVDIVVIDSVAALTPKAELEGDMGDSKMGLQARLMSQALRKLTANI 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++    +FINQ+R KIGVMFG+PETTTGGNALKFY+S+RLDIRR+G +KD +   GNQT
Sbjct: 193 NKTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASIRLDIRRIGQLKDGEEAIGNQT 252

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++ EFDIMYGEGIS  GE++DLGV+  I+ KSG+WFS+   +L QGR
Sbjct: 253 RVKVVKNKVAPPFRKAEFDIMYGEGISKTGEILDLGVEYGIIKKSGSWFSYGETKLAQGR 312

Query: 311 ENSKIFLRENIEIAENIES 329
           + SK  +++N E+A  +E+
Sbjct: 313 DASKALIKDNPELAAELEA 331


>gi|222064100|emb|CAR78905.1| recombinase A [Pseudochrobactrum sp. KSS 7.8]
          Length = 247

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 204/247 (82%), Positives = 230/247 (93%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E V +GSL LDIALG+GG PKGRIVEIYGPESSGKTT+ALHTIA++QK GG CAFVDAEH
Sbjct: 1   ETVPTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTMALHTIAEAQKKGGICAFVDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG
Sbjct: 61  ALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIGVMFGSPETTTGGNALKF
Sbjct: 121 EMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKF 180

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           Y+SVRLDIRR+GSIK++D I GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GELIDL
Sbjct: 181 YASVRLDIRRIGSIKERDEIVGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELIDL 240

Query: 286 GVKASIV 292
           GVKA IV
Sbjct: 241 GVKAGIV 247


>gi|300780995|ref|ZP_07090849.1| recombination protein A [Corynebacterium genitalium ATCC 33030]
 gi|300532702|gb|EFK53763.1| recombination protein A [Corynebacterium genitalium ATCC 33030]
          Length = 396

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 204/327 (62%), Positives = 264/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AA++ I++ +GKGAIM+LG        I+ +SSG+  +D+ALGIGG+P+GRIV
Sbjct: 36  DRQNALDAAMAMIEKDFGKGAIMRLGDDNR--PPIQAISSGNTAVDVALGIGGWPRGRIV 93

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA++Q+ GG  AF+DAEHALD  YA+KLGVD  NLL+SQPDTG
Sbjct: 94  EIYGPESSGKTTVALHAIAEAQRAGGIAAFIDAEHALDPEYAKKLGVDTDNLLVSQPDTG 153

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IVIDSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 154 EQALEIADMLVRSGAIDMIVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 213

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR D+RR+ ++KD     GN+T
Sbjct: 214 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDVRRIQTLKDGQDSIGNRT 273

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+K+VKNK++ PFK  EFDIMYGEGIS    +ID+GV   I+ KSG+WF+++G +LGQG+
Sbjct: 274 RLKIVKNKVSPPFKVAEFDIMYGEGISRESSIIDMGVDNGIIKKSGSWFTYEGDQLGQGK 333

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           E ++IFL+EN E+A  +E  + +  G+
Sbjct: 334 EKARIFLKENPELANELERKIFEKLGV 360


>gi|291457715|ref|ZP_06597105.1| protein RecA [Bifidobacterium breve DSM 20213]
 gi|291380768|gb|EFE88286.1| protein RecA [Bifidobacterium breve DSM 20213]
          Length = 416

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/330 (61%), Positives = 264/330 (80%), Gaps = 2/330 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL+Q+++ +GKG+ M+LG Q    + +EV+ +GSL LD+ALGIGG PKGRIVE
Sbjct: 45  RKAALDTALAQVEKSFGKGSAMRLGDQ--PVQNVEVIPTGSLALDMALGIGGLPKGRIVE 102

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH +A +QK GG  A++DAEHALD  YARKLGVD  +L++SQPD GE
Sbjct: 103 IYGPESSGKTTLALHVVANAQKKGGVAAYIDAEHALDPAYARKLGVDTDSLIVSQPDNGE 162

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T +++
Sbjct: 163 QALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALA 222

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLDIRR+ ++K+ D   GN+TR
Sbjct: 223 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDIRRIQTLKNGDEAVGNRTR 282

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNKMA PFK  EFD++YGEGIS  G +ID+  +  +V KSG+WF+++G +LGQGRE
Sbjct: 283 VKVVKNKMAPPFKSAEFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTYEGDQLGQGRE 342

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADS 341
             + FL++N  I E IE+ ++   GL+  +
Sbjct: 343 KVRQFLKDNPAITEEIENKVKAEFGLIGSA 372


>gi|39995256|ref|NP_951207.1| recombinase A [Geobacter sulfurreducens PCA]
 gi|50403565|sp|P62215|RECA_GEOSL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|39982018|gb|AAR33480.1| recA protein [Geobacter sulfurreducens PCA]
 gi|298504261|gb|ADI82984.1| recombinase A [Geobacter sulfurreducens KN400]
          Length = 338

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/327 (66%), Positives = 272/327 (83%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KA+E ALSQI++ +GKGAIM+LG+  ++ + +  + +GSL LD+ALG+GG P+GRI+
Sbjct: 4   EREKAIELALSQIEKQFGKGAIMRLGADEALPD-VAAIPTGSLSLDLALGVGGVPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH  A++QK GG  AFVDAEHALD  YARKLGV   +LL+SQPDTG
Sbjct: 63  EIYGPESSGKTTLALHIAAEAQKMGGIAAFVDAEHALDIGYARKLGVKTDDLLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI +MLVRSGAVD++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  I
Sbjct: 123 EQALEIAEMLVRSGAVDVLVIDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLTGII 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S C ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIR++ S+K    + G++T
Sbjct: 183 SKSNCCVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRKIASLKQGQDVIGSRT 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PFK+VEFDI YGEGIS  G+++DL V+  IVDKSGAWFS+ G R+GQGR
Sbjct: 243 KVKVVKNKVAPPFKEVEFDIYYGEGISREGDILDLAVEKGIVDKSGAWFSYGGDRIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           ENS++FL+E  E+   IE  +   AG+
Sbjct: 303 ENSRLFLKERPELVNEIEGKVYDVAGI 329


>gi|306450653|gb|ADM88579.1| RecA [Propionibacterium acnes]
          Length = 319

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 204/314 (64%), Positives = 256/314 (81%), Gaps = 2/314 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL  AL QI++ +GKG+IM+LG Q ++   I  + +GS+ LD+ALG+GG P+GRIV
Sbjct: 6   DREKALATALQQIEKQHGKGSIMRLGEQETV--KIAAIPTGSVALDVALGVGGLPRGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA +Q  GG CAF+DAEHALD  YARKLGVD  +LL+SQPD G
Sbjct: 64  EIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPEYARKLGVDTDSLLVSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGA+++IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADTLVRSGALELIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + +    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RRV ++KD   + GN+T
Sbjct: 184 NAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRVETLKDGSEMVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV KNK+A PFKQ EFDI+YG+GIS  G LID+GV   I+ KSG+WFS+  ++LGQG+
Sbjct: 244 RVKVAKNKVAPPFKQAEFDILYGQGISREGSLIDMGVDCGIITKSGSWFSYNNEQLGQGK 303

Query: 311 ENSKIFLRENIEIA 324
           EN + FLR N ++A
Sbjct: 304 ENVRKFLRGNPDVA 317


>gi|304440346|ref|ZP_07400235.1| recombination protein A [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371098|gb|EFM24715.1| recombination protein A [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 355

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/323 (63%), Positives = 263/323 (81%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALE A+++I++ +GKGA+M LG    +   IE + +GSL LD+ALGIGG PKGRI+
Sbjct: 9   EKQKALETAVTKIEKQFGKGAVMLLGENSKL--DIESIPTGSLSLDVALGIGGIPKGRII 66

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH +A++QK GG  AF+DAEHALD  YAR LGVD KNL+ISQPD+G
Sbjct: 67  EIYGPESSGKTTLALHIVAEAQKMGGIAAFIDAEHALDPQYARALGVDEKNLIISQPDSG 126

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L+RS AV +I+IDSVAALTP+AEI+G+MG+++ G  ARLMSQALRK T +I
Sbjct: 127 EQALEIAEHLIRSNAVSVIIIDSVAALTPKAEIDGEMGDAMVGRHARLMSQALRKFTGAI 186

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S+  ++FINQ+R KIGV+FG+PETTTGG AL+FYSSVRLDIR++ ++K  D + GN+ 
Sbjct: 187 HKSQTSVIFINQLREKIGVVFGNPETTTGGRALRFYSSVRLDIRKIETLKQGDDMIGNRV 246

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV KNK+A PFKQVEFDIMYG+GIS  G LID+GV    VDKSG+W+S+  ++LGQGR
Sbjct: 247 RVKVAKNKVAPPFKQVEFDIMYGKGISRSGILIDMGVDYGFVDKSGSWYSYGEEKLGQGR 306

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           EN+K FL +N  IA+ IE+ +R+
Sbjct: 307 ENAKAFLEQNKNIADEIEAKIRE 329


>gi|255326361|ref|ZP_05367445.1| protein RecA [Rothia mucilaginosa ATCC 25296]
 gi|255296578|gb|EET75911.1| protein RecA [Rothia mucilaginosa ATCC 25296]
          Length = 367

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/317 (64%), Positives = 256/317 (80%), Gaps = 2/317 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           ++KALEA ++QI + YGKGA+M+LG +       EV+S+G++ LD ALGIGG P+GR++E
Sbjct: 18  RAKALEAVMAQIDKNYGKGAVMRLGDKE--ITKTEVISTGAIALDAALGIGGLPRGRVIE 75

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH +A  QK GG  AF+DAEHALD IYA KLGVD+  LL+SQPDTGE
Sbjct: 76  IYGPESSGKTTVALHAVANVQKAGGVAAFIDAEHALDPIYAAKLGVDIDQLLVSQPDTGE 135

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DMLV SGAVDI+V+DSVAAL PRAEIEGDMG+S  G+QARLMSQALRK+T  +S
Sbjct: 136 QALEIMDMLVGSGAVDIVVVDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKITGRLS 195

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
            +    +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+DIRR+ ++KD  +  GN+TR
Sbjct: 196 ATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDIRRIETLKDGANPIGNRTR 255

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
            K+VKNKMA PFKQ EFDI+YGEGIS  G ++DL V+  IV KSGAWF++ G++LGQGRE
Sbjct: 256 AKIVKNKMAPPFKQAEFDILYGEGISVEGGILDLAVENDIVKKSGAWFTYDGEQLGQGRE 315

Query: 312 NSKIFLRENIEIAENIE 328
           N +  L++N E+ E ++
Sbjct: 316 NVRKLLKDNPELTEELQ 332


>gi|172040554|ref|YP_001800268.1| recombinase A [Corynebacterium urealyticum DSM 7109]
 gi|238058641|sp|B1VDD6|RECA_CORU7 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|171851858|emb|CAQ04834.1| recombinase A [Corynebacterium urealyticum DSM 7109]
          Length = 371

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 201/323 (62%), Positives = 267/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+SKAL+ A++QI++ +GKGAIM+LG +      I  + SG++ +++ALGIGGFP+GR+V
Sbjct: 14  DRSKALDLAMAQIEKDFGKGAIMRLGDENR--PPISAIPSGNIAINVALGIGGFPRGRVV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA++QK GG  AF+DAEHALD  YA+ LGVD   LL+SQPDTG
Sbjct: 72  EIYGPESSGKTTVALHAIAEAQKGGGIAAFIDAEHALDPEYAKALGVDTDALLVSQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D++VIDSVAALTP+AEI+G+MG+S  G+QARLMSQALRK+TS++
Sbjct: 132 EQALEIADMLVRSGAIDMVVIDSVAALTPKAEIDGEMGDSHVGLQARLMSQALRKMTSAL 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR DIRR+ ++KD   + GN+T
Sbjct: 192 YQTGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRIQALKDGQDVVGNRT 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+K+VKNK++ PFK  EFDI+YGEGIS  G ++DLGV A I+ KSG+WF+++G++LGQG+
Sbjct: 252 RLKIVKNKVSPPFKIAEFDILYGEGISREGSILDLGVDAGIIKKSGSWFTYEGEQLGQGK 311

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           E ++ FL+ N E+AE ++  + Q
Sbjct: 312 EKARDFLKSNPELAEQLDDRIMQ 334


>gi|86742207|ref|YP_482607.1| recombinase A [Frankia sp. CcI3]
 gi|123750817|sp|Q2J764|RECA_FRASC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|86569069|gb|ABD12878.1| recA protein [Frankia sp. CcI3]
          Length = 345

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/332 (61%), Positives = 265/332 (79%), Gaps = 2/332 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M  +D+ KAL+ AL+QI + +GKG++M+LG        ++ + +GS+ LD+ALGIGG P+
Sbjct: 1   MAGLDREKALDNALAQIDKQFGKGSVMRLGDD--TRPPVQAIPTGSIALDVALGIGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA KLGVD   LL+SQ
Sbjct: 59  GRIIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAGKLGVDTDGLLVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKM 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T++++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     
Sbjct: 179 TAALANSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTEAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PF+  EFDI+YG GIS  G LID+GV+  I+ KSGAW+++ G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFRTAEFDIVYGGGISREGSLIDMGVEHGIIRKSGAWYTYDGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338
           GQG+EN++ FLR+N ++A  IE  +++  G++
Sbjct: 299 GQGKENARSFLRDNPDLANEIEKKIKEKLGIL 330


>gi|295703856|ref|YP_003596931.1| RecA1 protein [Bacillus megaterium DSM 319]
 gi|40217467|emb|CAD56681.2| RecA1 protein [Bacillus megaterium]
 gi|294801515|gb|ADF38581.1| RecA1 protein [Bacillus megaterium DSM 319]
          Length = 345

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/317 (65%), Positives = 257/317 (81%), Gaps = 2/317 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK  AL+ AL QI++ +G G+I+++G        +E  SSGSL LDIALGI G+PKGRI+
Sbjct: 3   DKKAALDMALKQIEKQFGTGSIIKMGE--GTHTKVEASSSGSLALDIALGINGYPKGRIM 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT++LH IA+ QK GG  AF+DAEHALD +YARKLGVD+  LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVSLHAIAEVQKNGGRAAFIDAEHALDPVYARKLGVDIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDIIV+DSVAAL P+ EIEG+MG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQALEIAEALVRSGAVDIIVVDSVAALVPQKEIEGEMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K  + I GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKLGNDIVGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNKMA PF+  E DIMYGEGIS  GE++D+G +  IV KSG+WFS+  +RLGQGR
Sbjct: 241 RIKVVKNKMAPPFRIAEVDIMYGEGISKEGEILDIGSEVDIVQKSGSWFSYNEERLGQGR 300

Query: 311 ENSKIFLRENIEIAENI 327
           EN+KIFL+EN EI E I
Sbjct: 301 ENAKIFLKENPEIREEI 317


>gi|227833324|ref|YP_002835031.1| recombinase A [Corynebacterium aurimucosum ATCC 700975]
 gi|262184308|ref|ZP_06043729.1| recombinase A [Corynebacterium aurimucosum ATCC 700975]
 gi|254790429|sp|C3PGY9|RECA_CORA7 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|227454340|gb|ACP33093.1| recombinase A [Corynebacterium aurimucosum ATCC 700975]
          Length = 377

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 206/318 (64%), Positives = 260/318 (81%), Gaps = 2/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+AA++ I++ +GKGA+M+LG        I+ +SSG+  +DIALG+GGFP+GRIV
Sbjct: 15  DRQKALDAAMAMIEKDFGKGAVMRLGDDDR--PPIQAISSGNTAIDIALGVGGFPRGRIV 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA +QKTGG  AF+DAEHALD  YAR LGVD  NLL+SQPDTG
Sbjct: 73  EIYGPESSGKTTVALHAIASAQKTGGIAAFIDAEHALDPEYARLLGVDTDNLLVSQPDTG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DIIVIDSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 133 EQALEIADMLVRSGAIDIIVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR DIRR+ ++KD     GN+T
Sbjct: 193 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRIQTLKDGQDAIGNRT 252

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK++ PFK  EFDIMYGEGIS    +IDLGV+   + KSG+WF+++G +LGQG+
Sbjct: 253 KLKVVKNKVSPPFKIAEFDIMYGEGISRESSIIDLGVEHGFIKKSGSWFTYEGDQLGQGK 312

Query: 311 ENSKIFLRENIEIAENIE 328
           E ++ FL++N ++A+ IE
Sbjct: 313 EKARNFLKDNPDLADEIE 330


>gi|224476413|ref|YP_002634019.1| recombinase A [Staphylococcus carnosus subsp. carnosus TM300]
 gi|254790446|sp|B9DPC5|RECA_STACT RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|222421020|emb|CAL27834.1| RecA protein (recombinase A) [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 355

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 204/327 (62%), Positives = 261/327 (79%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+  +  +++ +GKGA+M+LG   +    +  +SSGS+ LD ALG+GG+PKGRIV
Sbjct: 4   ERQKALDTVIKNMEKSFGKGAVMKLGDNKA--RRVSSISSGSVTLDNALGVGGYPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD +YA  LGVD+ NL +SQPD G
Sbjct: 62  EIYGPESSGKTTVALHAIAEVQKQGGVAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI +  VRSGAVDIIV+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 122 EQGLEIAEAFVRSGAVDIIVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S C  VFINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T
Sbjct: 182 SKSNCTAVFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G R+GQG+
Sbjct: 242 KIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN K +L+E+ EI ++I++ LRQ  G+
Sbjct: 302 ENVKNYLKEHPEIKQDIDNKLRQKLGI 328


>gi|163754758|ref|ZP_02161880.1| DNA recombination protein [Kordia algicida OT-1]
 gi|161325699|gb|EDP97026.1| DNA recombination protein [Kordia algicida OT-1]
          Length = 335

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/318 (63%), Positives = 255/318 (80%), Gaps = 3/318 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+  L ++ + YGKG +M++  Q  +   ++ +SSGSLGLDIALG+GG+P+GR++E
Sbjct: 10  KLKALKLTLDKLDKTYGKGTVMKMSDQAVV--DVDAISSGSLGLDIALGVGGYPRGRVIE 67

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA++QK GG  AF+DAEHA D  YA  LGVD+ NL+ISQPD GE
Sbjct: 68  IYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAEHAFDRFYAESLGVDIDNLIISQPDHGE 127

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RSGA+DI+VIDSVAALTP++EIEG+MG+S  G+ ARLMSQALRKLT+SIS
Sbjct: 128 QALEIADNLIRSGAIDIVVIDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTASIS 187

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQT 250
           ++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IK  D  + GN+T
Sbjct: 188 KTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKGTDGEVKGNKT 247

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK VEFDIMYG G+S  GE++D+GV   I+ KSG+WFS+   +LGQGR
Sbjct: 248 RVKVVKNKVAPPFKTVEFDIMYGAGVSKVGEILDIGVNYEIIKKSGSWFSYGDSKLGQGR 307

Query: 311 ENSKIFLRENIEIAENIE 328
           +  K  L +N E+ E +E
Sbjct: 308 DAVKTLLEDNPELLEELE 325


>gi|229916160|ref|YP_002884806.1| recA protein [Exiguobacterium sp. AT1b]
 gi|259563336|sp|C4L2V3|RECA_EXISA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|229467589|gb|ACQ69361.1| recA protein [Exiguobacterium sp. AT1b]
          Length = 349

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/327 (62%), Positives = 262/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ +ALE AL QI++ +GKG+IM+LG      + + V+ SGS+ LD+ALG GG+P+GR++
Sbjct: 3   DRKQALEMALRQIEKQFGKGSIMRLGENTD--QQVSVIPSGSIALDVALGAGGYPRGRVI 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GG  AFVDAEHALD  YA+ LGV++  LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVALHAIAEVQKRGGQAAFVDAEHALDPKYAKNLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDI+V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ + 
Sbjct: 121 EQALEIAEALVRSGAVDILVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAT 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I++FINQ+R KIG+MFG+PETT GG ALKFYSSVRL++RR  ++K    + GN+T
Sbjct: 181 NKSKTIVIFINQIREKIGIMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGQDMVGNRT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++K+VKNK+A PFK  E DIMYGEGIS  GELID+G    IV KSGAW+SF  +RLGQGR
Sbjct: 241 KIKIVKNKIAPPFKTAEVDIMYGEGISREGELIDIGADLDIVQKSGAWYSFNEERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K +++EN  IA  +E  +R + GL
Sbjct: 301 ENAKQYMKENPAIAAEVEQQIRDHYGL 327


>gi|154509073|ref|ZP_02044715.1| hypothetical protein ACTODO_01590 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798707|gb|EDN81127.1| hypothetical protein ACTODO_01590 [Actinomyces odontolyticus ATCC
           17982]
          Length = 363

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/318 (63%), Positives = 259/318 (81%), Gaps = 2/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D++KALE ALSQI + +GKG++M+LG        ++V+ +GSL LD+ALGIGG P+GR++
Sbjct: 15  DRNKALEVALSQIDKQFGKGSVMRLGDDNR--PPVQVIPTGSLALDVALGIGGLPRGRVI 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A +QK GG  AF+DAEHALD +YAR LGVD  +LL+SQPDTG
Sbjct: 73  EVYGPESSGKTTVALHAVANAQKAGGNAAFIDAEHALDPVYARALGVDTDSLLVSQPDTG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSG +DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 133 EQALEIADMLIRSGGIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S +    +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+  +  GN+T
Sbjct: 193 SATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKEAGAPVGNRT 252

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R KVVKNKMA PFKQ EFDI+YG+GIS  G +ID+GV+A IV KSG+WF++   +LGQG+
Sbjct: 253 RAKVVKNKMAPPFKQAEFDIVYGKGISREGSIIDMGVEAGIVRKSGSWFTYGDDQLGQGK 312

Query: 311 ENSKIFLRENIEIAENIE 328
           EN + FL +N E+A  IE
Sbjct: 313 ENVRQFLVDNPELANEIE 330


>gi|298346680|ref|YP_003719367.1| recombination protein A [Mobiluncus curtisii ATCC 43063]
 gi|304389611|ref|ZP_07371573.1| recombination protein A [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|315656854|ref|ZP_07909741.1| recombination protein A [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|298236741|gb|ADI67873.1| recombination protein A [Mobiluncus curtisii ATCC 43063]
 gi|304327164|gb|EFL94400.1| recombination protein A [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|315492809|gb|EFU82413.1| recombination protein A [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 370

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 201/318 (63%), Positives = 259/318 (81%), Gaps = 1/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +++KAL+ AL QI + +GKG++M+LG   ++   + V+ +GS+ LD+ALGIGG P+GRI+
Sbjct: 5   ERAKALQTALGQIDKQFGKGSVMRLGDS-AVNTNVSVIPTGSVALDVALGIGGLPRGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +QK GG  AF+DAEHALD +YA+KLGVD+ NLL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQKQGGNAAFIDAEHALDPVYAQKLGVDIDNLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSG +DIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGGLDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKITGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S +    +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+     GN+T
Sbjct: 184 SATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKENGDAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R K+VKNKMA PF+Q EFDIMYG+GIS  G LIDLGV + IV KSG+WF++   +LGQG+
Sbjct: 244 RAKIVKNKMAPPFRQAEFDIMYGQGISREGGLIDLGVDSGIVTKSGSWFTYGEMQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIE 328
           EN + FL +N E++  IE
Sbjct: 304 ENVRKFLVDNPELSAEIE 321


>gi|258645321|ref|ZP_05732790.1| protein RecA [Dialister invisus DSM 15470]
 gi|260402670|gb|EEW96217.1| protein RecA [Dialister invisus DSM 15470]
          Length = 356

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/336 (61%), Positives = 262/336 (77%), Gaps = 8/336 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KALE A+ QI R +G GAIM+LG      +  EV+ +GSL LDIA+G+GG+P+GR++
Sbjct: 13  ERQKALENAMHQITREFGAGAIMRLGDMKGKLD-TEVIPTGSLALDIAVGVGGYPRGRVI 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH IA++QK  G  AF+DAEHALD +YA  LGVD + LLISQPD+G
Sbjct: 72  EIYGPESSGKTTLALHAIAEAQKNNGVAAFIDAEHALDPVYAHHLGVDTERLLISQPDSG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL I + LVRSGAVD+IVIDSVAAL P+ EIEGD+G+   G+QARLMS+ALRKLT  I
Sbjct: 132 EQALSICEQLVRSGAVDMIVIDSVAALVPKQEIEGDIGDQSVGLQARLMSKALRKLTGII 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S+ I++FINQ+R K+G+MFG+PETTTGG ALKFYSS+R++IRR  +IK+   + GN+T
Sbjct: 192 SKSRTIVIFINQIREKVGIMFGNPETTTGGRALKFYSSIRVEIRRGEAIKNGTDVVGNRT 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R KVVKNK+A PFK  EFD+MYGEGIS  G L+DL     I+ KSGAW+S+KG R+ QGR
Sbjct: 252 RAKVVKNKVAPPFKTAEFDVMYGEGISKEGTLLDLATNMDIIQKSGAWYSYKGNRISQGR 311

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           E +K FLREN EIA  I+ ++R       D+L+ EP
Sbjct: 312 EAAKAFLRENQEIAAEIDKIIR-------DTLVVEP 340


>gi|55669155|gb|AAV54516.1| RecA protein [Burkholderia tuberum STM678]
          Length = 279

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/280 (72%), Positives = 247/280 (88%), Gaps = 1/280 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G++M+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A
Sbjct: 1   GSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+I
Sbjct: 60  EMQKLGGTAAFIDAEHALDIQYAGKLGVNVADLLVSQPDTGEQALEIADALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQG
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYSGERIGQG 279


>gi|293192297|ref|ZP_06609408.1| protein RecA [Actinomyces odontolyticus F0309]
 gi|292820212|gb|EFF79206.1| protein RecA [Actinomyces odontolyticus F0309]
          Length = 363

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/318 (63%), Positives = 259/318 (81%), Gaps = 2/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D++KALE ALSQI + +GKG++M+LG        ++V+ +GSL LD+ALGIGG P+GR++
Sbjct: 15  DRNKALEVALSQIDKQFGKGSVMRLGDDNR--PPVQVIPTGSLALDVALGIGGLPRGRVI 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A +QK GG  AF+DAEHALD +YAR LGVD  +LL+SQPDTG
Sbjct: 73  EVYGPESSGKTTVALHAVANAQKAGGNAAFIDAEHALDPVYARALGVDTDSLLVSQPDTG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSG +DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 133 EQALEIADMLIRSGGIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S +    +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+  +  GN+T
Sbjct: 193 SATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKEAGAPVGNRT 252

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R KVVKNKMA PFKQ EFDI+YG+GIS  G +ID+GV+A IV KSG+WF++   +LGQG+
Sbjct: 253 RAKVVKNKMAPPFKQAEFDIVYGKGISREGSIIDMGVEAGIVRKSGSWFTYGDDQLGQGK 312

Query: 311 ENSKIFLRENIEIAENIE 328
           EN + FL +N E+A  IE
Sbjct: 313 ENVRQFLVDNPELANEIE 330


>gi|237750203|ref|ZP_04580683.1| recombinase A [Helicobacter bilis ATCC 43879]
 gi|229374097|gb|EEO24488.1| recombinase A [Helicobacter bilis ATCC 43879]
          Length = 346

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/337 (60%), Positives = 268/337 (79%), Gaps = 4/337 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALE A+ Q+ + +GKG +++LG +    E I+ +S+GSLGLD+ALGIGG PKGRI+
Sbjct: 6   NKQKALENAMKQVDKAFGKGVLIRLGDKQ--VEKIDSISTGSLGLDLALGIGGIPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+L  IA+ Q+ GG CAF+DAEHALD  YA+ LGVD +NLL+SQPD G
Sbjct: 64  EIYGPESSGKTTLSLQVIAECQRNGGVCAFIDAEHALDVYYAKNLGVDTENLLVSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL I + +  SG VD+IV+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  +
Sbjct: 124 EQALSILETIACSGGVDLIVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           SR    ++FINQ+RMKIGVM +GSPETTTGGNALKFY+SVR+DIR+V ++K  DSI GN+
Sbjct: 184 SRMNTTVIFINQIRMKIGVMGYGSPETTTGGNALKFYASVRVDIRKVATLKQSDSIIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF++ EFDIM+GEGIS  GE+ID GVK  I+DKSGAW S+  +++GQG
Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIIDKSGAWLSYGDKKIGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           REN+K FL+EN++IA  I + +++  G  +D ++  P
Sbjct: 304 RENAKAFLKENVDIANEIAAKIKEQIG-TSDEIMPLP 339


>gi|222054214|ref|YP_002536576.1| recA protein [Geobacter sp. FRC-32]
 gi|221563503|gb|ACM19475.1| recA protein [Geobacter sp. FRC-32]
          Length = 333

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 211/324 (65%), Positives = 276/324 (85%), Gaps = 1/324 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KA++ ALSQI++ +GKG+IM+LG++ ++ + +  + +GSL LDIALG+GG P+GRI+
Sbjct: 3   EREKAIDLALSQIEKQFGKGSIMRLGNEEALPD-VAAIPTGSLSLDIALGVGGVPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH +A++QKT G  AF+DAEHALD  YARKLGV   +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLALHIVAEAQKTEGIAAFIDAEHALDIGYARKLGVKTDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ LVRSGA+D++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT+ I
Sbjct: 122 EQALEITETLVRSGAIDVLVIDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLTAII 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S C ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIR++ S+K  + + G++T
Sbjct: 182 SKSNCCVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRKIASLKQGNDVIGSRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PFK+VEFDI+YGEGIS  G+++DL V+  IVDKSGAWFS+  +R+GQGR
Sbjct: 242 KVKVVKNKVAPPFKEVEFDILYGEGISREGDILDLAVEKGIVDKSGAWFSYGKERIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQN 334
           ENS+I+L++N EI   I+  L Q 
Sbjct: 302 ENSRIYLKQNPEICAEIKEKLAQQ 325


>gi|119896798|ref|YP_932011.1| recombinase A [Azoarcus sp. BH72]
 gi|166199597|sp|A1K2R9|RECA_AZOSB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|119669211|emb|CAL93124.1| recombinase A [Azoarcus sp. BH72]
          Length = 344

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/317 (66%), Positives = 269/317 (84%), Gaps = 1/317 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           SQI++ +GKG+IM++G  G++ + I+ VS+GSLGLDIALG+GG P+GR+VEIYGPESSGK
Sbjct: 14  SQIEKQFGKGSIMRMGD-GNVEKDIQTVSTGSLGLDIALGLGGLPRGRVVEIYGPESSGK 72

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEI DML
Sbjct: 73  TTLTLQVVAEMQKLGGTAAFIDAEHALDVGYAEKLGVNITDLLISQPDTGEQALEIADML 132

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSG VD++VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT++I R+  +++FI
Sbjct: 133 VRSGGVDVVVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTANIKRTNTLVIFI 192

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIRR G+IK  D + G++T+VKVVKNK++
Sbjct: 193 NQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRRTGTIKRGDEVVGSETKVKVVKNKVS 252

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
            PFK+  FDI+YGEG+S  GE+IDLGV   IVDKSGAW+++ G ++GQG++N++ FLR N
Sbjct: 253 PPFKEAHFDILYGEGVSREGEIIDLGVDHKIVDKSGAWYAYNGDKIGQGKDNAREFLRAN 312

Query: 321 IEIAENIESLLRQNAGL 337
             +A  IE+ +R   GL
Sbjct: 313 PALAREIENKVRVVLGL 329


>gi|315655225|ref|ZP_07908126.1| recombination protein A [Mobiluncus curtisii ATCC 51333]
 gi|315490480|gb|EFU80104.1| recombination protein A [Mobiluncus curtisii ATCC 51333]
          Length = 371

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 201/318 (63%), Positives = 259/318 (81%), Gaps = 1/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +++KAL+ AL QI + +GKG++M+LG   ++   + V+ +GS+ LD+ALGIGG P+GRI+
Sbjct: 5   ERAKALQTALGQIDKQFGKGSVMRLGDS-AVNTNVSVIPTGSVALDVALGIGGLPRGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +QK GG  AF+DAEHALD +YA+KLGVD+ NLL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQKQGGNAAFIDAEHALDPVYAQKLGVDIDNLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSG +DIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGGLDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKITGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S +    +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+     GN+T
Sbjct: 184 SATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKENGDAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R K+VKNKMA PF+Q EFDIMYG+GIS  G LIDLGV + IV KSG+WF++   +LGQG+
Sbjct: 244 RAKIVKNKMAPPFRQAEFDIMYGQGISREGGLIDLGVDSGIVTKSGSWFTYGEMQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIE 328
           EN + FL +N E++  IE
Sbjct: 304 ENVRKFLVDNPELSAEIE 321


>gi|281423324|ref|ZP_06254237.1| protein RecA [Prevotella oris F0302]
 gi|281402660|gb|EFB33491.1| protein RecA [Prevotella oris F0302]
          Length = 339

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/323 (65%), Positives = 269/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AA+S+I++ +GKG+IM++G +    E +E + +GS+GLD+ALG+GG+P+GRI+
Sbjct: 12  EKLKALQAAMSKIEKDFGKGSIMRMGDEQ--IENVETIPTGSIGLDVALGVGGYPRGRII 69

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD G
Sbjct: 70  EIYGPESSGKTTLAIHAIAEAQKKGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDNG 129

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL+I D L+RS AVDI+V+DSVAALTP+ EIEGDMG+++ G+QARLMSQALRKLTS+I
Sbjct: 130 EQALQIADELIRSSAVDILVVDSVAALTPKKEIEGDMGDNVVGLQARLMSQALRKLTSTI 189

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++    +FINQ+R KIGVMFGSPETTTGGNALKFYSSVRLDIRRV S+KD D+I GNQ 
Sbjct: 190 SKTNTCCIFINQLREKIGVMFGSPETTTGGNALKFYSSVRLDIRRVTSLKDGDNIIGNQV 249

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++ EF+IM+GEGIS  GE++DLGV+  I+ KSG+WFS+   +L QGR
Sbjct: 250 RVKVVKNKVAPPFRKAEFEIMFGEGISKVGEILDLGVEYGIIQKSGSWFSYNSSKLAQGR 309

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           + +K  LR+N E+ E +E L+ Q
Sbjct: 310 DATKALLRDNPELCEELEGLITQ 332


>gi|208434108|ref|YP_002265774.1| recombinase [Helicobacter pylori G27]
 gi|226723631|sp|B5Z9S8|RECA_HELPG RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|208432037|gb|ACI26908.1| recombinase [Helicobacter pylori G27]
          Length = 347

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/327 (62%), Positives = 265/327 (81%), Gaps = 3/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+  A+ QI +V+GKGA+++LG +    E I+ +S+GSLGLD+ALGIGG PKGRI+
Sbjct: 6   DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDAISTGSLGLDLALGIGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTQNLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  +
Sbjct: 124 EQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ S+K  +   GN+
Sbjct: 184 HKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIASLKQNEQHIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF++ EFDIM+GEGIS  GE+ID GVK  IVDKSGAW S++ ++LGQG
Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336
           REN+K  L+E+  +A+ I   ++++ G
Sbjct: 304 RENAKALLKEDKALADEITLKIKESIG 330


>gi|325853060|ref|ZP_08171209.1| RecA protein [Prevotella denticola CRIS 18C-A]
 gi|325484434|gb|EGC87355.1| RecA protein [Prevotella denticola CRIS 18C-A]
          Length = 341

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 209/322 (64%), Positives = 267/322 (82%), Gaps = 2/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+AA+S+I++ +GKG+IM++G +    E +EV+ +GS+ LD ALG+GG+P+GRI+E
Sbjct: 15  KLKALQAAMSKIEKDFGKGSIMRMGDEQ--IENVEVIPTGSVALDTALGVGGYPRGRIIE 72

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD GE
Sbjct: 73  IYGPESSGKTTLAIHAIAEAQKQGGIAAFIDAEHAFDRFYAEKLGVDVDNLWISQPDNGE 132

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RS A+DI+V+DSVAALTP+ EIEGDMG+S  G+QARLMSQALRKLTS+IS
Sbjct: 133 QALEIADQLIRSSAIDILVVDSVAALTPKKEIEGDMGDSAVGLQARLMSQALRKLTSTIS 192

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGVMFG+PETTTGGNALKFYSSVRLDIRRV SIKD D + GNQ R
Sbjct: 193 KTNTCCIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRVTSIKDGDQVIGNQVR 252

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF++ EF+I +GEGIS  GE++DLGV+  I+ KSG+WFS+ G +L QGR+
Sbjct: 253 VKVVKNKVAPPFRKAEFEITFGEGISKIGEIVDLGVQYGIIQKSGSWFSYNGTKLAQGRD 312

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
            +K  +++N E+AE +E L++Q
Sbjct: 313 ATKTMIKDNPELAEELEGLIKQ 334


>gi|86134785|ref|ZP_01053367.1| protein RecA [Polaribacter sp. MED152]
 gi|85821648|gb|EAQ42795.1| protein RecA [Polaribacter sp. MED152]
          Length = 335

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 200/317 (63%), Positives = 258/317 (81%), Gaps = 2/317 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+  L ++ + YGKG++M+LG    + E ++ +SSGSLGLD+ALG+GG+P+GR++E
Sbjct: 10  KLKALQLTLDKLDKTYGKGSVMKLGD--VVTEDVDAISSGSLGLDLALGVGGYPRGRVIE 67

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL +H IA++QK GG  AF+DAEHA D  YA  LGVD+ NL+ISQPD GE
Sbjct: 68  IYGPESSGKTTLTIHAIAEAQKAGGIAAFIDAEHAFDKFYAENLGVDIDNLIISQPDHGE 127

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RSGA+DI+VIDSVAALTP++EIEG+MG+S  G+ ARLMSQALRKLT +IS
Sbjct: 128 QALEIADNLIRSGAIDIVVIDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTGTIS 187

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IKD D + GN T+
Sbjct: 188 KTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRRTQIKDGDRVIGNSTK 247

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNK+A PF+  EFDIMYG+GIS  GE++D+GV+  IV KSG+WFS+   +LGQGR+
Sbjct: 248 VKIVKNKVAPPFQIAEFDIMYGQGISKVGEILDIGVELGIVKKSGSWFSYGDTKLGQGRD 307

Query: 312 NSKIFLRENIEIAENIE 328
             K  +++N E+ E +E
Sbjct: 308 AVKGLIKDNPELMEELE 324


>gi|157284493|gb|ABV31094.1| RecA [Vibrio cholerae O1]
          Length = 337

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 199/312 (63%), Positives = 260/312 (83%), Gaps = 2/312 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKT
Sbjct: 2   QIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L 
Sbjct: 60  TLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALA 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FIN
Sbjct: 120 RSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAA 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+ N+  +L+EN 
Sbjct: 240 PFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKENP 299

Query: 322 EIAENIESLLRQ 333
           EIA+ ++  LR+
Sbjct: 300 EIAKTLDKKLRE 311


>gi|299142502|ref|ZP_07035633.1| recA protein [Prevotella oris C735]
 gi|298575937|gb|EFI47812.1| recA protein [Prevotella oris C735]
          Length = 339

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/323 (65%), Positives = 269/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AA+S+I++ +GKG+IM++G +    E +E + +GS+GLD+ALG+GG+P+GRI+
Sbjct: 12  EKLKALQAAMSKIEKDFGKGSIMRMGDEQ--IENVETIPTGSIGLDVALGVGGYPRGRII 69

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD G
Sbjct: 70  EIYGPESSGKTTLAIHAIAEAQKKGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDNG 129

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL+I D L+RS AVDI+V+DSVAALTP+ EIEGDMG+++ G+QARLMSQALRKLTS+I
Sbjct: 130 EQALQIADELIRSSAVDILVVDSVAALTPKKEIEGDMGDNVVGLQARLMSQALRKLTSTI 189

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++    +FINQ+R KIGVMFGSPETTTGGNALKFYSSVRLDIRRV S+KD D+I GNQ 
Sbjct: 190 SKTNTCCIFINQLREKIGVMFGSPETTTGGNALKFYSSVRLDIRRVTSLKDGDNIIGNQV 249

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++ EF+IM+GEGIS  GE++DLGV+  I+ KSG+WFS+   +L QGR
Sbjct: 250 RVKVVKNKVAPPFRKAEFEIMFGEGISKVGEILDLGVEYGIIQKSGSWFSYNSSKLAQGR 309

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           + +K  LR+N E+ E +E L+ Q
Sbjct: 310 DATKALLRDNPELCEELEGLITQ 332


>gi|146298749|ref|YP_001193340.1| recA protein [Flavobacterium johnsoniae UW101]
 gi|146153167|gb|ABQ04021.1| recA protein [Flavobacterium johnsoniae UW101]
          Length = 335

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 201/330 (60%), Positives = 267/330 (80%), Gaps = 2/330 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+  L ++ + YGKG +M++G + +I E +E +SSGSLG+D+ALG+ G+PKGRI+E
Sbjct: 8   KLKALQLTLDKLDKTYGKGTVMKMGDR-AIVE-VETISSGSLGVDLALGVNGYPKGRIIE 65

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA++QK GG  AF+DAEHA D  YA KL VD++NL+ISQPD GE
Sbjct: 66  IYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAEHAFDRNYAEKLNVDIENLIISQPDNGE 125

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI + L+RSGA+DI+VIDSVAALTP++EIEG+MG+S  G+ ARLMSQALRKLT +IS
Sbjct: 126 QALEIAENLIRSGAIDIVVIDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTGTIS 185

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++ C + FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IKD +++ GN+T+
Sbjct: 186 KTNCTVFFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSAQIKDGENVIGNRTK 245

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNK+A PFK  EFDIMYGEG+S  GE++DL V+  IV K+G+WFS+   +LGQGR+
Sbjct: 246 VKIVKNKVAPPFKTAEFDIMYGEGVSKTGEILDLAVEFDIVKKAGSWFSYGDTKLGQGRD 305

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADS 341
             K  +++N E+A+ +E  ++ +   +A++
Sbjct: 306 AVKALIKDNPELADELEEKIKAHMKELANA 335


>gi|239908963|ref|YP_002955705.1| RecA protein [Desulfovibrio magneticus RS-1]
 gi|259563333|sp|C4XQT5|RECA_DESMR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|239798830|dbj|BAH77819.1| RecA protein [Desulfovibrio magneticus RS-1]
          Length = 355

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/343 (61%), Positives = 272/343 (79%), Gaps = 3/343 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +S+AL  AL+ I+R +G+GA+M+L  + S    I  + +GS+GLD+ALGIGG PKGRI E
Sbjct: 13  RSEALATALTTIERKHGQGAVMRL--EDSAHVKIPAIPTGSIGLDLALGIGGIPKGRITE 70

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH IA+SQK GGT AF+DAEHALD  YAR+LGV+   +LISQPD GE
Sbjct: 71  IYGPESSGKTTLALHIIAESQKLGGTAAFIDAEHALDVNYARRLGVNTPEMLISQPDFGE 130

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL+I D+LVRSGAVD++VIDSVAAL P+AE+EG+MGE+  G QARLMS A+RKLT +I 
Sbjct: 131 QALDIADLLVRSGAVDVVVIDSVAALIPQAELEGEMGETQVGGQARLMSHAMRKLTGTIH 190

Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +S+  ++FINQ+RMKIG+  +GSPETTTGGNALKFY+SVRLDIRR+ ++KDK+   G++ 
Sbjct: 191 KSQTSVIFINQIRMKIGMTGYGSPETTTGGNALKFYASVRLDIRRIQTLKDKEETYGSRC 250

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++  FDI+YG G+S  GELID+GV+A IVDKSGAWF+F  +RLGQGR
Sbjct: 251 RVKVVKNKVAPPFREALFDILYGTGVSREGELIDMGVEAGIVDKSGAWFAFGSERLGQGR 310

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           +N + FL+E+ +I + IE  LR++ G         P +  ++D
Sbjct: 311 DNVRAFLQEHTDIRDQIEGKLREHLGFAEYVPPPSPEVMEEED 353


>gi|157284487|gb|ABV31091.1| RecA [Vibrio cholerae O1]
 gi|157284495|gb|ABV31095.1| RecA [Vibrio cholerae O1]
 gi|157284499|gb|ABV31097.1| RecA [Vibrio cholerae O1]
          Length = 337

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 199/312 (63%), Positives = 260/312 (83%), Gaps = 2/312 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKT
Sbjct: 2   QIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L 
Sbjct: 60  TLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALA 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FIN
Sbjct: 120 RSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAA 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+ N+  +L+EN 
Sbjct: 240 PFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKENP 299

Query: 322 EIAENIESLLRQ 333
           EIA+ ++  LR+
Sbjct: 300 EIAKTLDKKLRE 311


>gi|162424783|gb|ABX90069.1| RecA protein [Burkholderia sabiae]
          Length = 278

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 201/279 (72%), Positives = 246/279 (88%), Gaps = 1/279 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G++M+LG QG   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A
Sbjct: 1   GSVMRLG-QGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA+KLGV++  LL+SQPDTGEQALEI D LVRSG++D+I
Sbjct: 60  EMQKLGGTAAFIDAEHALDIQYAQKLGVNVSELLVSQPDTGEQALEIADALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQ
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQ 278


>gi|315225103|ref|ZP_07866920.1| recombination protein A [Capnocytophaga ochracea F0287]
 gi|314944786|gb|EFS96818.1| recombination protein A [Capnocytophaga ochracea F0287]
          Length = 389

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 211/337 (62%), Positives = 271/337 (80%), Gaps = 10/337 (2%)

Query: 5   KEMNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           KEM++ + K +AL+  L ++ + YGKG +  LG   +  E +EV S+GS+GLD ALG+GG
Sbjct: 9   KEMSVEEAKKQALKLTLEKLDKTYGKGTVRALGD--NPVEDVEVYSTGSIGLDAALGVGG 66

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
           +PKGR++EIYGPESSGKTTL LH IA+ QK  GT AF+DAEHA D +YA++LGVD+KNLL
Sbjct: 67  YPKGRVIEIYGPESSGKTTLTLHAIAEVQKAKGTAAFIDAEHAFDPVYAQRLGVDVKNLL 126

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           I+QPD+GEQALEI D L+RS AVD++VIDSVAALTP+ EI+G+MG+S  G+ ARLMSQAL
Sbjct: 127 ITQPDSGEQALEIADALIRSNAVDLVVIDSVAALTPKGEIDGEMGDSKMGLHARLMSQAL 186

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG------ 237
           RK+T SIS++KCI++FINQ+R KIG+ FG+PETTTGGNALKFY+SVR+DIR+ G      
Sbjct: 187 RKITGSISKAKCIVIFINQLRDKIGITFGNPETTTGGNALKFYASVRIDIRKDGGPQGSA 246

Query: 238 SIKDKD-SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
           +IKD +  I GN+T+VK+VKNK+ASPFK   FDIM+G GIS   EL++LGV+A IVDKSG
Sbjct: 247 AIKDSNGEIIGNKTKVKIVKNKVASPFKTATFDIMFGLGISKSAELLELGVEADIVDKSG 306

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           A++S+KG RLGQGR+ S   L +N EIAE IE  LR+
Sbjct: 307 AFYSYKGTRLGQGRDASIAMLNDNPEIAEQIEVELRE 343


>gi|313206274|ref|YP_004045451.1| reca protein [Riemerella anatipestifer DSM 15868]
 gi|312445590|gb|ADQ81945.1| recA protein [Riemerella anatipestifer DSM 15868]
 gi|315023044|gb|EFT36057.1| RecA protein [Riemerella anatipestifer RA-YM]
 gi|325336284|gb|ADZ12558.1| RecA1 [Riemerella anatipestifer RA-GD]
          Length = 343

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/328 (64%), Positives = 267/328 (81%), Gaps = 6/328 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL A L ++ + YGKG +M+LG  G++   IEV+ SGSLGLD+ALG+GG+PKGRIV
Sbjct: 12  DKKKALAAVLEKLDKTYGKGTVMKLG-DGTVDHNIEVIPSGSLGLDLALGVGGYPKGRIV 70

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA++QK GGT AF+DAEHA D  YA KLG++L+ L++SQPD G
Sbjct: 71  EIYGPESSGKTTLTLHAIAEAQKVGGTAAFIDAEHAFDMHYAEKLGINLEELIVSQPDNG 130

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L+RSG VDI+V+DSVAALTP+AEI+GDMG+S  G+ ARLMSQALRKLTSSI
Sbjct: 131 EQALEIADSLIRSGGVDIVVVDSVAALTPKAEIDGDMGDSKMGLHARLMSQALRKLTSSI 190

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR----VGSIKDKD-SI 245
           S++KC ++FINQ+R KIGVMFGSPETTTGGNALKFY+SVR+DIRR     G IKDK   +
Sbjct: 191 SKTKCTVIFINQLRDKIGVMFGSPETTTGGNALKFYASVRIDIRRSLSDTGKIKDKSGEV 250

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+T+VKVVKNK+A PFK  EFDIMYGEG+S  GE++D+     I+ KSG+WFS++  +
Sbjct: 251 IGNRTKVKVVKNKVAPPFKSAEFDIMYGEGVSKVGEILDVATDLDIIQKSGSWFSYQDTK 310

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQ 333
           LGQGR+  K  +++N E+AE +E+ +R+
Sbjct: 311 LGQGRDTVKELIKDNPELAEELEAKIRE 338


>gi|257866314|ref|ZP_05645967.1| recombinase A [Enterococcus casseliflavus EC30]
 gi|257873170|ref|ZP_05652823.1| recombinase A [Enterococcus casseliflavus EC10]
 gi|257875933|ref|ZP_05655586.1| recombinase A [Enterococcus casseliflavus EC20]
 gi|225936920|emb|CAJ82777.1| recA recombinase [Enterococcus casseliflavus]
 gi|257800272|gb|EEV29300.1| recombinase A [Enterococcus casseliflavus EC30]
 gi|257807334|gb|EEV36156.1| recombinase A [Enterococcus casseliflavus EC10]
 gi|257810099|gb|EEV38919.1| recombinase A [Enterococcus casseliflavus EC20]
          Length = 347

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 201/327 (61%), Positives = 266/327 (81%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ YGKGAIM+LG +  + + I  + SGSL LD+ALG+GG+P+GRIV
Sbjct: 4   DRKAALDAALKKIEKNYGKGAIMKLGEK--VDQQISTIPSGSLALDVALGVGGYPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++ +LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+VIDSVAAL PRAEI+G+MG++  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVIDSVAALVPRAEIDGEMGDTHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+G+MFG+PETT GG ALKFYS++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEQLKSGTDIIGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E D+MYG+GIS  GEL+D+ V+  IVDKSGAW+++KG R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEVDMMYGQGISQEGELLDMAVEQDIVDKSGAWYAYKGDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K ++RE+ E+   + + +R   G+
Sbjct: 302 ENAKNYMREHQEMMLEVSARVRDAYGI 328


>gi|259595805|gb|ACW83541.1| RecA [Vibrio cholerae O1]
          Length = 337

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 199/311 (63%), Positives = 259/311 (83%), Gaps = 2/311 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKT
Sbjct: 2   QIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L 
Sbjct: 60  TLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALA 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FIN
Sbjct: 120 RSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAA 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+ N+  +L+EN 
Sbjct: 240 PFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKENP 299

Query: 322 EIAENIESLLR 332
           EIA+ ++  LR
Sbjct: 300 EIAKTLDKKLR 310


>gi|153814514|ref|ZP_01967182.1| hypothetical protein RUMTOR_00728 [Ruminococcus torques ATCC 27756]
 gi|317500555|ref|ZP_07958777.1| hypothetical protein HMPREF1026_00720 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089345|ref|ZP_08338245.1| recA [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145848008|gb|EDK24926.1| hypothetical protein RUMTOR_00728 [Ruminococcus torques ATCC 27756]
 gi|316898065|gb|EFV20114.1| hypothetical protein HMPREF1026_00720 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330405408|gb|EGG84943.1| recA [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 363

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 196/331 (59%), Positives = 265/331 (80%), Gaps = 1/331 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AA++++++ +GKGA+M+LG  G+    +E V +G L LDIALG+GG PKGR++
Sbjct: 6   EKKKALDAAIAKLEKDFGKGAVMKLGESGAHV-AVETVPTGCLSLDIALGLGGVPKGRVI 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GG   F+DAEHALD +YA+ +GVD+  L ISQPD+G
Sbjct: 65  EVYGPESSGKTTVALHMIAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDELYISQPDSG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           +QALEI + + RSGA+DIIV+DSVAAL PR EIEGDMG+S  G+QARLMSQALRKLT  I
Sbjct: 125 DQALEIAETMARSGAIDIIVVDSVAALVPRQEIEGDMGDSHVGLQARLMSQALRKLTPVI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S CI++FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+D+R+  ++K    + GN T
Sbjct: 185 SKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYASVRMDVRKTETLKQSGEMVGNHT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+K+VKNK+A PFK+ EFDIM+G+GIS  G+++DL  K  +V KSGAW++++G ++GQGR
Sbjct: 245 RIKIVKNKIAPPFKEAEFDIMFGKGISKEGDILDLATKLDLVKKSGAWYAYEGDKIGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           EN+K +L  + EI E +E  +R++  L  DS
Sbjct: 305 ENAKTYLSAHPEIMEELEKKVREHYQLGTDS 335


>gi|46579503|ref|YP_010311.1| recombinase A [Desulfovibrio vulgaris str. Hildenborough]
 gi|120602948|ref|YP_967348.1| recombinase A [Desulfovibrio vulgaris DP4]
 gi|50403564|sp|P62214|RECA_DESVH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166220642|sp|A1VEQ5|RECA_DESVV RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|46448917|gb|AAS95570.1| recA protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|120563177|gb|ABM28921.1| RecA protein [Desulfovibrio vulgaris DP4]
 gi|311233317|gb|ADP86171.1| recA protein [Desulfovibrio vulgaris RCH1]
          Length = 357

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/346 (59%), Positives = 271/346 (78%), Gaps = 6/346 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + +ALE ALS I+R YG GA+M+L  +  +   I V+ +GS+GLD+ALG+GG P+GR+ E
Sbjct: 13  RREALETALSTIERKYGLGAVMKLSDEAHV--AIPVIPTGSIGLDLALGVGGVPRGRVTE 70

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA++QK GGT AF+DAEHALD  YAR+LGV+ + LLISQPD GE
Sbjct: 71  IYGPESSGKTTLTLHIIAEAQKRGGTAAFIDAEHALDVAYARRLGVNTEELLISQPDFGE 130

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL+I DMLVRS AVD++VIDSVAAL P+AE+EG MG++  G QARLMS ALRKLT +I 
Sbjct: 131 QALDIADMLVRSAAVDLVVIDSVAALIPQAELEGSMGDTQVGGQARLMSHALRKLTGTIH 190

Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +S+  ++FINQ+RMKIG M +GSPETTTGGNALKFYSSVR+DIR++ ++KDK+ + G++T
Sbjct: 191 KSRTAVIFINQIRMKIGTMGYGSPETTTGGNALKFYSSVRMDIRKIQTLKDKEEVYGSRT 250

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PF++  FDI+YG GIS  GE+IDLG  A I+DKSG+WF+F  +RLGQG+
Sbjct: 251 RVKIVKNKVAPPFREALFDILYGTGISRTGEIIDLGSDAGIIDKSGSWFAFGSERLGQGK 310

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLL---QEPAINTKDD 353
           EN +  L EN  + E IE+ L ++ G+         +EPA + ++D
Sbjct: 311 ENVRALLEENAPLREAIEAKLIEHLGMTPTKFASSGEEPANDEEND 356


>gi|311739647|ref|ZP_07713482.1| recombination protein A [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311305463|gb|EFQ81531.1| recombination protein A [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 377

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/323 (64%), Positives = 260/323 (80%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+AA++ I++ YGKGA+M+LG        I+ +SSG+  +D+ALGIGGFP+GRIV
Sbjct: 15  DRQKALDAAMAMIEKDYGKGAVMRLGDDNR--PPIKAISSGNTAIDVALGIGGFPRGRIV 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA +QK GG  AF+DAEHALD  YAR LGVD  NLL+SQPDTG
Sbjct: 73  EIYGPESSGKTTVALHAIASAQKDGGIAAFIDAEHALDPQYARLLGVDTDNLLVSQPDTG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DIIV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 133 EQALEIADMLVRSGAIDIIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVR DIRR+ ++KD     GN+T
Sbjct: 193 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRCDIRRIQTLKDGQDAIGNRT 252

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK++ PFK  EFDIMYGEGIS    +IDLGV+   + KSG+WF+++G +LGQG+
Sbjct: 253 KLKVVKNKVSPPFKIAEFDIMYGEGISRESSIIDLGVENGFIRKSGSWFTYEGDQLGQGK 312

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           E ++ FL++N ++A  IE  + Q
Sbjct: 313 EKARNFLKDNPDLANEIEQKIFQ 335


>gi|255325175|ref|ZP_05366281.1| protein RecA [Corynebacterium tuberculostearicum SK141]
 gi|255297740|gb|EET77051.1| protein RecA [Corynebacterium tuberculostearicum SK141]
          Length = 378

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/323 (64%), Positives = 260/323 (80%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+AA++ I++ YGKGA+M+LG        I+ +SSG+  +D+ALGIGGFP+GRIV
Sbjct: 16  DRQKALDAAMAMIEKDYGKGAVMRLGDDNR--PPIKAISSGNTAIDVALGIGGFPRGRIV 73

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA +QK GG  AF+DAEHALD  YAR LGVD  NLL+SQPDTG
Sbjct: 74  EIYGPESSGKTTVALHAIASAQKDGGIAAFIDAEHALDPQYARLLGVDTDNLLVSQPDTG 133

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DIIV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 134 EQALEIADMLVRSGAIDIIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 193

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVR DIRR+ ++KD     GN+T
Sbjct: 194 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRCDIRRIQTLKDGQDAIGNRT 253

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK++ PFK  EFDIMYGEGIS    +IDLGV+   + KSG+WF+++G +LGQG+
Sbjct: 254 KLKVVKNKVSPPFKIAEFDIMYGEGISRESSIIDLGVENGFIRKSGSWFTYEGDQLGQGK 313

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           E ++ FL++N ++A  IE  + Q
Sbjct: 314 EKARNFLKDNPDLANEIEQKIFQ 336


>gi|119961491|ref|YP_947360.1| recombinase A [Arthrobacter aurescens TC1]
 gi|166199595|sp|A1R548|RECA_ARTAT RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|119948350|gb|ABM07261.1| recA protein [Arthrobacter aurescens TC1]
          Length = 347

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/327 (62%), Positives = 264/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALEAAL+QI + +GKG+IM+LG        IEV+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 6   DREKALEAALAQIDKQFGKGSIMRLGD--DTRAPIEVIPTGSIALDVALGIGGLPRGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD   LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPDYAAKLGVDTDALLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLV SG++DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T  +
Sbjct: 124 EQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGRL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+     GN+T
Sbjct: 184 SQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIQTLKEGADSVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           + K+VKNKMA PFK  EFDI+YG+GIS  G +ID+GV+  I+ KSG+WF++ G +LGQG 
Sbjct: 244 KAKIVKNKMAPPFKIAEFDIIYGQGISREGGIIDMGVEHGIIKKSGSWFTYDGDQLGQGM 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           ENS+ FLR+N E+A+ +E L+++  G+
Sbjct: 304 ENSRRFLRDNPELAQELERLIKEKLGV 330


>gi|257095836|ref|YP_003169477.1| recA protein [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257048360|gb|ACV37548.1| recA protein [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 338

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/311 (66%), Positives = 270/311 (86%), Gaps = 1/311 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++G +GS+   I VVS+GSLGLDIALGIGG P+GR+VEIYGPESSGKT
Sbjct: 15  QIEKQFGKGSIMKMG-EGSVATDIPVVSTGSLGLDIALGIGGLPRGRVVEIYGPESSGKT 73

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGT AF+DAEHALD  YA+KLGV+L+ LLISQPDTGEQALEI DMLV
Sbjct: 74  TLTLQVIAEMQKLGGTAAFIDAEHALDPGYAQKLGVNLEELLISQPDTGEQALEIADMLV 133

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RS +VD++VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT++I+R+  +++FIN
Sbjct: 134 RSASVDVVVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTANINRTNTLVIFIN 193

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A 
Sbjct: 194 QIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGDEVIGNETRVKVVKNKVAP 253

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PF++  FDI+YGEG S  GE+++LGV+  ++DKSG+W+++ G ++GQG++N++ +L+   
Sbjct: 254 PFREAIFDILYGEGTSREGEIVELGVQHKLIDKSGSWYAYNGDKIGQGKDNAREYLKSKP 313

Query: 322 EIAENIESLLR 332
           ++A+ IE+ +R
Sbjct: 314 QLAQEIEARIR 324


>gi|634052|emb|CAA84615.1| RecA [Helicobacter pylori]
          Length = 347

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/327 (61%), Positives = 265/327 (81%), Gaps = 3/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+  A+ QI +V+GKGA+++LG +    E I+ +S+GSLGLD+ALGIGG PKGRI+
Sbjct: 6   DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDAISTGSLGLDLALGIGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTQNLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  +
Sbjct: 124 EQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+
Sbjct: 184 HKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIATLKQNEQHIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF++ EFDIM+GEGIS  GE+ID GVK  IVDKSGAW S++ ++LGQG
Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336
           REN+K  L+E+  +A+ I   ++++ G
Sbjct: 304 RENAKALLKEDKALADEITLKIKESIG 330


>gi|256544708|ref|ZP_05472080.1| RecA protein [Anaerococcus vaginalis ATCC 51170]
 gi|256399597|gb|EEU13202.1| RecA protein [Anaerococcus vaginalis ATCC 51170]
          Length = 356

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/335 (61%), Positives = 262/335 (78%), Gaps = 3/335 (0%)

Query: 1   MDYRKEMNI-VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIAL 59
           M   KE N   DK KAL  A   I++ YGKGAIM++G    +   + V+ +G++ LDIAL
Sbjct: 1   MAKEKEKNTDNDKEKALSQAFKNIEKKYGKGAIMKMGEAPKV--DVTVIPTGAINLDIAL 58

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           G+GG P+GR++EI+GPESSGKTTL LH IA+ QK G TCAF+DAEHA+D+ YA+KLGV++
Sbjct: 59  GVGGLPRGRVIEIFGPESSGKTTLTLHCIAEDQKLGNTCAFIDAEHAMDAEYAKKLGVNI 118

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
             L++SQPDTGEQAL+I + LVRSGAVD+IV+DSVAAL P+AEIEG MG+S  G+QARLM
Sbjct: 119 DELILSQPDTGEQALDIAESLVRSGAVDLIVVDSVAALVPKAEIEGQMGDSHMGLQARLM 178

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           SQALR+LT  IS++   ++FINQ+R KIGVMFG+PETTTGG ALKFYSSVRLDIRR+  I
Sbjct: 179 SQALRRLTGIISKTNTTVIFINQLREKIGVMFGNPETTTGGKALKFYSSVRLDIRRIKGI 238

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           +  D   GN+TRVKVVKNK+A PFK VEFDIMYG+GIS  G ++D  V   IV+K+G+W+
Sbjct: 239 QQGDDYIGNRTRVKVVKNKVAPPFKVVEFDIMYGQGISKSGVILDSAVDEDIVEKAGSWY 298

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
           S+ G++LGQGREN K +L EN +I   IE  LR+N
Sbjct: 299 SYNGEKLGQGRENVKTYLEENEDILHEIEEKLREN 333


>gi|225936946|emb|CAJ82770.1| recA recombinase [Enterococcus casseliflavus]
          Length = 347

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 201/327 (61%), Positives = 266/327 (81%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ YGKGAIM+LG +  + + I  + SGSL LD+ALG+GG+P+GRIV
Sbjct: 4   DRKAALDAALKKIEKDYGKGAIMKLGEK--VDQQISTIPSGSLALDVALGVGGYPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++ +LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+VIDSVAAL PRAEI+G+MG++  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVIDSVAALVPRAEIDGEMGDTHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+G+MFG+PETT GG ALKFYS++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEQLKSGTDIIGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E D+MYG+GIS  GEL+D+ V+  IVDKSGAW+++KG R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEVDMMYGQGISQEGELLDMAVEQDIVDKSGAWYAYKGDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K ++RE+ E+   + + +R   G+
Sbjct: 302 ENAKNYMREHEEMMLEVSARVRDAYGI 328


>gi|55669153|gb|AAV54515.1| RecA protein [Burkholderia sacchari]
          Length = 279

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 204/280 (72%), Positives = 246/280 (87%), Gaps = 1/280 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRLGD-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I ++ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKKTNCMVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + G++TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGSETRVKVVKNKVSPPFREAVFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQG
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQG 279


>gi|256819642|ref|YP_003140921.1| recA protein [Capnocytophaga ochracea DSM 7271]
 gi|256581225|gb|ACU92360.1| recA protein [Capnocytophaga ochracea DSM 7271]
          Length = 389

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 211/337 (62%), Positives = 271/337 (80%), Gaps = 10/337 (2%)

Query: 5   KEMNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           KEM++ + K +AL+  L ++ + YGKG +  LG   +  E +EV S+GS+GLD ALG+GG
Sbjct: 9   KEMSVEEAKKQALKLTLEKLDKTYGKGTVRALGD--NPVEDVEVYSTGSIGLDAALGVGG 66

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
           +PKGR++EIYGPESSGKTTL LH IA+ QK  GT AF+DAEHA D +YA++LGVD+KNLL
Sbjct: 67  YPKGRVIEIYGPESSGKTTLTLHAIAEVQKAKGTAAFIDAEHAFDPVYAQRLGVDVKNLL 126

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           I+QPD+GEQALEI D L+RS AVD++VIDSVAALTP+ EI+G+MG+S  G+ ARLMSQAL
Sbjct: 127 ITQPDSGEQALEIADALIRSNAVDLVVIDSVAALTPKGEIDGEMGDSKMGLHARLMSQAL 186

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG------ 237
           RK+T SIS++KCI++FINQ+R KIG+ FG+PETTTGGNALKFY+SVR+DIR+ G      
Sbjct: 187 RKITGSISKAKCIVIFINQLRDKIGITFGNPETTTGGNALKFYASVRIDIRKDGGPQGSA 246

Query: 238 SIKDKD-SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
           +IKD +  I GN+T+VK+VKNK+ASPFK   FDIM+G GIS   EL++LGV+A IVDKSG
Sbjct: 247 AIKDSNGEIIGNKTKVKIVKNKVASPFKTATFDIMFGLGISKSAELLELGVEADIVDKSG 306

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           A++S+KG RLGQGR+ S   L +N EIAE IE  LR+
Sbjct: 307 AFYSYKGTRLGQGRDASIAMLNDNPEIAEQIEVELRE 343


>gi|225570671|ref|ZP_03779694.1| hypothetical protein CLOHYLEM_06771 [Clostridium hylemonae DSM
           15053]
 gi|225160498|gb|EEG73117.1| hypothetical protein CLOHYLEM_06771 [Clostridium hylemonae DSM
           15053]
          Length = 358

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 195/327 (59%), Positives = 268/327 (81%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+AA+S++++ +GKG +M+LG   +  + +E V +GSL LD+ALG+GG PKGR+V
Sbjct: 5   DKKKALDAAISKLEKDFGKGTVMKLGDPAAQVQ-VETVPTGSLSLDLALGLGGVPKGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ QK GG   F+DAEHALD +YA  +GVD+  L ISQPD+G
Sbjct: 64  EIYGPESSGKTTVALHMIAEVQKRGGIAGFIDAEHALDPVYAGNIGVDIDELYISQPDSG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           +QALEIT+ +VRSGA+DI+V+DSVAAL PR EIEGDMG+S  G+QARLMSQALRKLT  I
Sbjct: 124 DQALEITETMVRSGAMDIVVVDSVAALVPRQEIEGDMGDSHVGLQARLMSQALRKLTPVI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S C+++FINQ+R K+G+MFG+PETTTGG ALKFY+S+R+D+RR+ ++K    + GN+T
Sbjct: 184 SKSNCVVIFINQLREKVGIMFGNPETTTGGRALKFYASIRMDVRRIETLKQGGEMVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFK+ EFDIM+G+GIS  G+++DL    ++++KSGAW+++ G ++GQGR
Sbjct: 244 RVKIVKNKIAPPFKEAEFDIMFGKGISREGDILDLAASINVINKSGAWYAYNGDKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+KI+L E+ +I E +E+ +R +  L
Sbjct: 304 ENAKIYLAEHPDILEAVETKIRAHYHL 330


>gi|188586099|ref|YP_001917644.1| RecA protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350786|gb|ACB85056.1| RecA protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 364

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 204/328 (62%), Positives = 264/328 (80%), Gaps = 1/328 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           ++K KAL+ ALSQI++ +GKG+IM+LG   +    +EV+ +G+L LDIALGIGG P+GR+
Sbjct: 1   MEKQKALDMALSQIEKQFGKGSIMKLGESNAKMN-VEVIPTGALSLDIALGIGGLPRGRV 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VE+YGPESSGKTT+ALH +A++QK GG  AF+DAEHALD  YAR LGV++  LL+SQPDT
Sbjct: 60  VEVYGPESSGKTTVALHAVAEAQKNGGNAAFIDAEHALDPAYARNLGVNIDELLVSQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + LVRSGA+D+IV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ S
Sbjct: 120 GEQALEIAESLVRSGAIDVIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I +S+   VFINQ+R K+GVMFG+PETT GG ALKFYSSVR+++RR+ S+K  + I GN+
Sbjct: 180 IRKSRTTAVFINQIREKVGVMFGNPETTPGGRALKFYSSVRIEVRRIESLKKGNDIIGNR 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TR KVVKNK+A PFK+ EFDIMYGEGIS    ++DL  + +IV KSG W+S+   RLGQG
Sbjct: 240 TRGKVVKNKVAPPFKKAEFDIMYGEGISKESNILDLASELNIVTKSGPWYSYGEDRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           +EN++ +LR+N +IAE IE  +  N  L
Sbjct: 300 KENARNYLRDNPDIAEAIELQILDNYNL 327


>gi|317132915|ref|YP_004092229.1| recA protein [Ethanoligenens harbinense YUAN-3]
 gi|315470894|gb|ADU27498.1| recA protein [Ethanoligenens harbinense YUAN-3]
          Length = 400

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 200/322 (62%), Positives = 259/322 (80%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL  AL+ I++ +GKGA+M+LG   ++   +  +S+GS+ LD+ALGIGG P+GRIV
Sbjct: 18  DKQKALATALANIEKQFGKGAVMRLGQNAAM--NVASISTGSVSLDLALGIGGVPRGRIV 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IAQ+QK GG+ AF+DAEHALD +YA+ LGVD+  LL+SQPD G
Sbjct: 76  EIYGPESSGKTTVALHIIAQAQKAGGSAAFIDAEHALDPVYAKALGVDVDALLVSQPDNG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+D++V+DSVAAL PRAEIEGDMG+S  G+QARLMSQALRKL  ++
Sbjct: 136 EQALEIAEALVRSGAIDVLVVDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKLAGAL 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+  C  VFINQ+R K+GV++G+PE TTGG ALKFYSSVR+D+R+  +IK+ D + G +T
Sbjct: 196 SKFNCAAVFINQLREKVGVVYGNPEVTTGGRALKFYSSVRMDVRKKEAIKNGDEVIGTRT 255

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VK+VKNK+A PFK  EFDIMYG GIS  GE++DL V+  I+ KSG+WFS++ +RLGQGR
Sbjct: 256 KVKIVKNKVAPPFKVAEFDIMYGTGISHEGEILDLAVEKDIIHKSGSWFSYQDRRLGQGR 315

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           +N K  L E+  +AE IE  +R
Sbjct: 316 DNVKKLLEEDPALAEEIEKQVR 337


>gi|15644782|ref|NP_206952.1| recombinase A [Helicobacter pylori 26695]
 gi|2507284|sp|P42445|RECA_HELPY RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|2313235|gb|AAD07218.1| recombinase (recA) [Helicobacter pylori 26695]
          Length = 347

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/327 (62%), Positives = 265/327 (81%), Gaps = 3/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+  A+ QI +V+GKGA+++LG +    E I+ +S+GSLGLD+ALGIGG PKGRI+
Sbjct: 6   DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDSISTGSLGLDLALGIGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  +
Sbjct: 124 EQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ S+K  +   GN+
Sbjct: 184 HKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIASLKQNEQHIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF++ EFDIM+GEGIS  GE+ID GVK  IVDKSGAW S++ ++LGQG
Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336
           REN+K  L+E+  +A+ I   ++++ G
Sbjct: 304 RENAKALLKEDKALADEITLKIKESIG 330


>gi|332045372|gb|EGI81565.1| recA protein [Lacinutrix algicola 5H-3-7-4]
          Length = 334

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 201/323 (62%), Positives = 262/323 (81%), Gaps = 3/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+  L ++ + YGKG +M++ S  ++ + +E + SGSLGLDIALG+GG+P+GR++E
Sbjct: 8   KLKALKLTLDKLDKAYGKGTVMKM-SDAAVVD-VEAIPSGSLGLDIALGVGGYPRGRVIE 65

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA++QK GG  AF+DAEHA D  YA KLGVD+ NL+ISQPD GE
Sbjct: 66  IYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAEHAFDRFYAEKLGVDIDNLIISQPDNGE 125

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RSGA+DI+V+DSVAALTP++EIEG+MG+S  G+ ARLMSQALRKLT+SIS
Sbjct: 126 QALEIADNLIRSGAIDIVVVDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTASIS 185

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQT 250
           ++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IK  D  + GN+T
Sbjct: 186 KTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKSTDGEVRGNKT 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK  EFDIMYGEG+S  GE++D+ V+  IV KSG+WFS++  +LGQGR
Sbjct: 246 RVKVVKNKVAPPFKLAEFDIMYGEGVSKVGEILDVAVEKEIVKKSGSWFSYEDTKLGQGR 305

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           +  K  +++N E+ + +E  +++
Sbjct: 306 DAVKAIIKDNPELFDELEQKIKK 328


>gi|157284491|gb|ABV31093.1| RecA [Vibrio cholerae O1]
          Length = 337

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 198/312 (63%), Positives = 260/312 (83%), Gaps = 2/312 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKT
Sbjct: 2   QIEKQFGKGSIMPLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L 
Sbjct: 60  TLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALA 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FIN
Sbjct: 120 RSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLRQSNCMCIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR++VVKNK+A+
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIRVVKNKIAA 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G+++GQG+ N+  +L+EN 
Sbjct: 240 PFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGKKIGQGKANACKYLKENP 299

Query: 322 EIAENIESLLRQ 333
           EIA+ ++  LR+
Sbjct: 300 EIAKTLDKKLRE 311


>gi|153006588|ref|YP_001380913.1| recA protein [Anaeromyxobacter sp. Fw109-5]
 gi|152030161|gb|ABS27929.1| recA protein [Anaeromyxobacter sp. Fw109-5]
          Length = 340

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 204/322 (63%), Positives = 264/322 (81%), Gaps = 1/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL  AL+ I++ +GKG+IM+LG  G+    + VV +GSLGLD+ALG+GG P+GR+V
Sbjct: 6   DKVKALGQALAGIEKQFGKGSIMRLGD-GAEPAPVAVVPTGSLGLDLALGVGGLPRGRVV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH IA+ Q+ GG  AF+DAEHALD  YAR+LGV L  LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTLALHAIAEVQRQGGVAAFIDAEHALDVTYARRLGVSLAELLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+D+IV+DSVAAL P+AEIEG+MG++  G+QARLMSQALRKLT+ +
Sbjct: 125 EQALEIAEQLVRSGAIDLIVVDSVAALVPKAEIEGEMGDAHMGVQARLMSQALRKLTAVV 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SR++ ++VFINQ+RMKIGV+FG+PETTTGG+ALKFY+SVRLDIRR+G +KD D + G++T
Sbjct: 185 SRNQSLVVFINQIRMKIGVVFGNPETTTGGHALKFYASVRLDIRRIGQVKDGDQVVGSRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++ EFD+ YG G+   GE +DLGV+   V+KSGA+F+  G+R+GQGR
Sbjct: 245 RVKVVKNKVAPPFREAEFDVRYGTGVDRHGEALDLGVERGAVEKSGAYFALDGERIGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           E +  +LR N E  E + + +R
Sbjct: 305 ERAIEWLRANPEAYERLAARVR 326


>gi|331091027|ref|ZP_08339869.1| recA [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330405249|gb|EGG84785.1| recA [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 340

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 194/327 (59%), Positives = 267/327 (81%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+AA+S++++ +GKG +M+LG  G+    +E V +GSL LDIALG+GG PKGR++
Sbjct: 5   DKLKALDAAISKLEKDFGKGTVMKLGDAGANVS-VETVPTGSLSLDIALGLGGVPKGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ LH IA+ QK GG   F+DAEHALD +YA+ +GVD+  L ISQPD+G
Sbjct: 64  EVYGPESSGKTTVTLHMIAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDELYISQPDSG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           +QALEI + +VRSGA+DI+VIDSVAAL P+ EIEGDMG+S  G+QARLMSQALRKLT  I
Sbjct: 124 DQALEIAETMVRSGAMDIVVIDSVAALVPKQEIEGDMGDSHVGLQARLMSQALRKLTPVI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S C+++FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+D+RR+ ++K    + GN+T
Sbjct: 184 SKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASVRMDVRRIETLKQSGEMVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+K+VKNK+A PFK+ EFDIM+G+GIS  G+++DL     +V+KSG+W+++ G+++GQGR
Sbjct: 244 RIKIVKNKIAPPFKEAEFDIMFGKGISKEGDVLDLATGIDLVNKSGSWYAYNGEKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K +L  + EI E +E+ +R++ GL
Sbjct: 304 ENAKTYLHTHPEIMEELEAKVREHYGL 330


>gi|227504860|ref|ZP_03934909.1| recombination protein RecA [Corynebacterium striatum ATCC 6940]
 gi|227198551|gb|EEI78599.1| recombination protein RecA [Corynebacterium striatum ATCC 6940]
          Length = 377

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/327 (63%), Positives = 262/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+AA++ I++ +GKGA+M+LG        I+ +SSG+  +DIALGIGGFP+GRIV
Sbjct: 16  DRQKALDAAMAMIEKDFGKGAVMRLGDDER--PPIQAISSGNTAIDIALGIGGFPRGRIV 73

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA +QK GG  AF+DAEHALD  YAR LGVD  NLL+SQPDTG
Sbjct: 74  EIYGPESSGKTTVALHAIASAQKDGGIAAFIDAEHALDPEYARLLGVDTDNLLVSQPDTG 133

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DIIVIDSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 134 EQALEIADMLVRSGAIDIIVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 193

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR DIRR+ ++KD     GN+T
Sbjct: 194 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRIQTLKDGQDAIGNRT 253

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++K+VKNK++ PFK  EFDIMYGEGIS    +IDLGV+   + KSG+WF+++G +LGQG+
Sbjct: 254 KIKIVKNKVSPPFKIAEFDIMYGEGISRESSIIDLGVEHGFIKKSGSWFTYEGDQLGQGK 313

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           E ++ FL+EN ++A+ IE  +    G+
Sbjct: 314 EKARNFLKENKDLADEIEKKIFNKLGI 340


>gi|300933047|ref|ZP_07148303.1| recombinase A [Corynebacterium resistens DSM 45100]
          Length = 370

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/349 (58%), Positives = 274/349 (78%), Gaps = 17/349 (4%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D++KAL+ A++QI++ +GKGA+M+LG        I+ +S+G++ +++ALGIGGFP+GR+V
Sbjct: 14  DRAKALDLAMAQIEKDFGKGAVMRLGDDNR--PPIQAISTGNIAINVALGIGGFPRGRVV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA++Q+ GG  AF+DAEHALD  YARKLGVD   LL+SQPDTG
Sbjct: 72  EVYGPESSGKTTVALHAIAEAQRAGGIAAFIDAEHALDPDYARKLGVDTDALLVSQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DIIV+DSVAALTP+AEI+GDMG+S  G+QARLMSQALRK+T ++
Sbjct: 132 EQALEIADMLIRSGAIDIIVVDSVAALTPKAEIDGDMGDSHVGLQARLMSQALRKMTGAL 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR DIRR+ ++KD   + GN+T
Sbjct: 192 YQTGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRIQALKDGQDVVGNRT 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK++ PFK  EFDI+YGEGIS  G +IDLGV+  I+ KSGAW+++ G +LGQG+
Sbjct: 252 RLKVVKNKVSPPFKIAEFDILYGEGISREGSIIDLGVEVGIIKKSGAWYTYDGDQLGQGK 311

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE----PAINTKDDAD 355
           E ++ FL+ N E+A  +E           D +++E    P  N KD+ +
Sbjct: 312 EKAREFLKANPEMAGELE-----------DRIMRELKVGPYANVKDETE 349


>gi|197259604|gb|ACH56443.1| RecA type I [Propionibacterium acnes]
          Length = 314

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 204/314 (64%), Positives = 255/314 (81%), Gaps = 2/314 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL  AL QI++ +GKG+IM+LG Q ++   I  + +GS+ LD+ALG+GG P+GRIVEIYG
Sbjct: 1   ALATALQQIEKQHGKGSIMRLGEQETV--KIAAIPTGSVALDVALGVGGLPRGRIVEIYG 58

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTT+ALH IA +Q  GG CAF+DAEHALD  YARKLGVD  +LL+SQPD GEQAL
Sbjct: 59  PESSGKTTVALHAIANAQAEGGICAFIDAEHALDPEYARKLGVDTDSLLVSQPDNGEQAL 118

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EI D LVRSGA+++IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +++ + 
Sbjct: 119 EIADTLVRSGALELIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGALNAAG 178

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
              +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RRV ++KD   + GN+TRVKV
Sbjct: 179 TTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRVETLKDGSEMVGNRTRVKV 238

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
            KNK+A PFKQ EFDI+YG+GIS  G LID+GV   I+ KSG+WFS+  ++LGQG+EN +
Sbjct: 239 AKNKVAPPFKQAEFDILYGQGISREGSLIDMGVDCGIITKSGSWFSYNNEQLGQGKENVR 298

Query: 315 IFLRENIEIAENIE 328
            FLR N ++A  IE
Sbjct: 299 KFLRGNPDVANEIE 312


>gi|258592081|emb|CBE68386.1| Recombinase A (recA) [NC10 bacterium 'Dutch sediment']
          Length = 351

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 211/329 (64%), Positives = 279/329 (84%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ +AL+ A++QI+++YGKG+IM++G+ G++   I  +S+GSL LD ALG+GG P+GRI+
Sbjct: 13  ERERALDLAIAQIEKLYGKGSIMRMGTSGALVP-IAAISTGSLELDAALGVGGVPRGRII 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTLALH IA++Q+ GG+ AFVDAEHALD+ YAR LGV + ++LISQPDTG
Sbjct: 72  EIFGPESSGKTTLALHIIAEAQRVGGSAAFVDAEHALDAAYARSLGVKIDDVLISQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT++LVRSGA+D++VIDSVAAL PRAEIEG+MGE   G+QARLMSQALRKLT++I
Sbjct: 132 EQALEITEVLVRSGAIDVVVIDSVAALVPRAEIEGEMGEPTMGLQARLMSQALRKLTAAI 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+SK  ++FINQ+R KIGVMFG+PETTTGG ALKFYSSVRLDIRR+ SIK+ +++ G++ 
Sbjct: 192 SKSKTCVIFINQLREKIGVMFGNPETTTGGRALKFYSSVRLDIRRISSIKEGENVVGSRV 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PFK+ EFD++YGEGIS  G ++DLGV+  I++KSG+WFS+ G+R+GQGR
Sbjct: 252 KVKVVKNKVAPPFKEAEFDLIYGEGISRTGGILDLGVEHKIIEKSGSWFSYTGERIGQGR 311

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           EN+K FL+EN  +   IE  +R   GL A
Sbjct: 312 ENAKRFLQENAALCNEIEVKVRAALGLTA 340


>gi|108562576|ref|YP_626892.1| recombinase A [Helicobacter pylori HPAG1]
 gi|207091965|ref|ZP_03239752.1| recombinase A [Helicobacter pylori HPKX_438_AG0C1]
 gi|217031914|ref|ZP_03437416.1| hypothetical protein HPB128_3g33 [Helicobacter pylori B128]
 gi|298736903|ref|YP_003729433.1| recombination protein RecA [Helicobacter pylori B8]
 gi|122980560|sp|Q1CV04|RECA_HELPH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|107836349|gb|ABF84218.1| recombinase RecA [Helicobacter pylori HPAG1]
 gi|216946383|gb|EEC24988.1| hypothetical protein HPB128_3g33 [Helicobacter pylori B128]
 gi|298356097|emb|CBI66969.1| recombination protein RecA [Helicobacter pylori B8]
          Length = 347

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/327 (61%), Positives = 265/327 (81%), Gaps = 3/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+  A+ QI +V+GKGA+++LG +    E I+ +S+GSLGLD+ALGIGG PKGRI+
Sbjct: 6   DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDAISTGSLGLDLALGIGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  +
Sbjct: 124 EQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+
Sbjct: 184 HKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF++ EFDIM+GEGIS  GE+ID GVK  IVDKSGAW S++ ++LGQG
Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336
           REN+K  L+E+  +A+ I   ++++ G
Sbjct: 304 RENAKALLKEDKALADEITLKIKESIG 330


>gi|258404448|ref|YP_003197190.1| recombinase A [Desulfohalobium retbaense DSM 5692]
 gi|257796675|gb|ACV67612.1| recA protein [Desulfohalobium retbaense DSM 5692]
          Length = 355

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/337 (61%), Positives = 271/337 (80%), Gaps = 5/337 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + +AL+ AL+ I+R YG+GA+M+L       + +  + +GS+GLD+ALGIGG P+GR+VE
Sbjct: 13  RKEALDTALTTIERKYGQGAVMRLSDDA--HQAVPFIPTGSVGLDLALGIGGIPRGRVVE 70

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL  IAQ+QK GG  AFVDAEHALD  YAR+LGV    L++SQPD GE
Sbjct: 71  IYGPESSGKTTLALEIIAQAQKGGGNAAFVDAEHALDVNYARRLGVKTDELVVSQPDYGE 130

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D+LVRSGA+D+IV+DSVAAL P+AE+EG+MGE+  G QARLMS A+RKLT SI 
Sbjct: 131 QALEIADLLVRSGALDVIVVDSVAALIPQAELEGNMGETQVGSQARLMSHAMRKLTGSIH 190

Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           RSK  ++FINQ+RMKIG+  +GSPETTTGGNALKFYSSVRLDIRR+ ++KDK+   GN+ 
Sbjct: 191 RSKTSVIFINQIRMKIGMTGYGSPETTTGGNALKFYSSVRLDIRRIQTLKDKEEFYGNRA 250

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++ +FDI+YG GIS  GEL+D+GV+  IVDKSG+W+++  +RLGQG+
Sbjct: 251 RVKVVKNKVAPPFREAQFDILYGTGISKEGELLDMGVEHGIVDKSGSWYAYGSERLGQGK 310

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           EN + FL++N EI+++IE+ L  + G+  +   QEPA
Sbjct: 311 ENVRAFLQQNPEISQDIENKLLVHLGMKDNG--QEPA 345


>gi|76363328|sp|Q6KCK0|RECA_ENTGA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|47678130|emb|CAF21828.1| RecA recombinase [Enterococcus gallinarum]
          Length = 348

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 201/327 (61%), Positives = 266/327 (81%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ YGKGAIM+LG +  + + I  + SGSL LD+ALG+GG+P+GRIV
Sbjct: 4   DRKAALDAALKKIEKNYGKGAIMKLGEK--VDQQISTIPSGSLALDVALGVGGYPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++ +LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKGGGTAAFIDAEHALDPQYAQKLGVNIDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+VIDSVAAL PRAEI+G+MG++  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVIDSVAALVPRAEIDGEMGDTHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+G+MFG+PETT GG ALKFYS++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEQLKSGTDIIGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E D+MYG+GIS  GEL+D+ V+  IVDKSGAW+++KG R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEVDMMYGQGISQEGELLDMAVEQDIVDKSGAWYAYKGDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K ++RE+ E+   + + +R   G+
Sbjct: 302 ENAKNYMREHQEMMMEVSARVRDAYGI 328


>gi|71909761|ref|YP_287348.1| recombinase A [Dechloromonas aromatica RCB]
 gi|123746668|sp|Q477V3|RECA_DECAR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|71849382|gb|AAZ48878.1| RecA bacterial DNA recombination protein [Dechloromonas aromatica
           RCB]
          Length = 343

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/313 (66%), Positives = 271/313 (86%), Gaps = 1/313 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G    I EGI+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 16  IEKQFGKGSIMKMGD-AEIDEGIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 74

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +A+ QK GG  AF+DAEHALD  YA+KLGV++ +LLISQPDTGEQALEI DMLVR
Sbjct: 75  LCLQVVAEMQKLGGVAAFIDAEHALDPQYAQKLGVNVGDLLISQPDTGEQALEIADMLVR 134

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG+VDIIV+DSVAALTPRAEIEG+MG+ + G+ ARLMSQALRKLT++I ++  +++FINQ
Sbjct: 135 SGSVDIIVVDSVAALTPRAEIEGEMGDQMVGLHARLMSQALRKLTANIKKTNTLVIFINQ 194

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IK  D + G++T+VKVVKNK+A P
Sbjct: 195 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKKGDEVIGSETKVKVVKNKVAPP 254

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE++++GV   +VDKSGAW+++KG+++GQG++N++ FL+ N E
Sbjct: 255 FREAIFDILYGEGISRQGEIVEMGVAHKLVDKSGAWYAYKGEKIGQGKDNAREFLKANPE 314

Query: 323 IAENIESLLRQNA 335
           IA+ IE+ +R+ A
Sbjct: 315 IAQEIEAGIREAA 327


>gi|167759044|ref|ZP_02431171.1| hypothetical protein CLOSCI_01391 [Clostridium scindens ATCC 35704]
 gi|167663451|gb|EDS07581.1| hypothetical protein CLOSCI_01391 [Clostridium scindens ATCC 35704]
          Length = 357

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 195/330 (59%), Positives = 266/330 (80%), Gaps = 1/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK +AL+AA++++++ +GKG +M+LG   +    +E + +GSL LD+ALG+GG PKGR+V
Sbjct: 5   DKKRALDAAIAKLEKDFGKGTVMKLGDPAAQV-AVETIPTGSLSLDLALGLGGVPKGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GG   F+DAEHALD  YA+ +GVD+  L ISQPD+G
Sbjct: 64  EVYGPESSGKTTVALHMIAEVQKRGGIAGFIDAEHALDPAYAKNIGVDIDELYISQPDSG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           +QALEI + +VRSGA+DIIV+DSVAAL PR EIEGDMG+S  G+QARLMSQALRKLT  I
Sbjct: 124 DQALEIAETMVRSGAMDIIVVDSVAALVPRQEIEGDMGDSHVGLQARLMSQALRKLTPVI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S C+++FINQ+R K+GVMFG+PETTTGG ALKFY+S+R+D+RR+ ++K    + GN+T
Sbjct: 184 SKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASIRMDVRRIETLKQSGEMVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFK+ EFDIM+G+GIS  G+++DL V   +V+KSGAWF++ G ++GQGR
Sbjct: 244 RVKIVKNKIAPPFKEAEFDIMFGKGISKEGDILDLAVSIDLVNKSGAWFAYNGNKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           EN+K +L E+ E+ E +E  +R++  L  D
Sbjct: 304 ENAKSYLAEHPEVMEELEKKIREHYDLDRD 333


>gi|313891948|ref|ZP_07825549.1| RecA protein [Dialister microaerophilus UPII 345-E]
 gi|329121010|ref|ZP_08249641.1| recombination protein A [Dialister micraerophilus DSM 19965]
 gi|313119591|gb|EFR42782.1| RecA protein [Dialister microaerophilus UPII 345-E]
 gi|327471172|gb|EGF16626.1| recombination protein A [Dialister micraerophilus DSM 19965]
          Length = 351

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/336 (61%), Positives = 267/336 (79%), Gaps = 8/336 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K+KALE+AL+QI + +G GAIM+LG      + IEV+S+GSL +DIA+G+GG+P+GR+ 
Sbjct: 9   EKNKALESALNQITKEFGAGAIMRLGDMRGKLD-IEVISTGSLAIDIAVGVGGYPRGRVT 67

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH IA++QK GG  AF+DAEHALD IYA  LGV+   LLISQPD G
Sbjct: 68  EIYGPESSGKTTLALHAIAEAQKIGGVAAFIDAEHALDPIYAHHLGVNTDALLISQPDCG 127

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL I + LVRSGAVDIIV+DSVAAL PR EIEGD+ +   G+QARLMS+A+R+LT  I
Sbjct: 128 EQALSICESLVRSGAVDIIVVDSVAALVPRQEIEGDISDQSVGLQARLMSKAMRRLTGII 187

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S+ I++FINQ+R K+G++FG+PETTTGG ALKFYSSVR+++RR  +IK+   + GN+T
Sbjct: 188 SKSRTIVIFINQIREKVGIVFGNPETTTGGRALKFYSSVRIEVRRGEAIKNGTDVVGNRT 247

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R KVVKNK+A PFK  EFD+MYGEGIS  G L+D+ V   I+ KSGAW+S+KG+R+ QGR
Sbjct: 248 RAKVVKNKVAPPFKVAEFDVMYGEGISREGTLLDIAVNMDIIKKSGAWYSYKGERISQGR 307

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           EN+K +L +N EIA+ I+ ++R       D+L+ EP
Sbjct: 308 ENAKKYLHDNTEIAKEIDKIIR-------DTLMVEP 336


>gi|221632222|ref|YP_002521443.1| recA protein [Thermomicrobium roseum DSM 5159]
 gi|221156923|gb|ACM06050.1| recA protein [Thermomicrobium roseum DSM 5159]
          Length = 354

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/326 (65%), Positives = 266/326 (81%), Gaps = 1/326 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +D+ KALE A+SQI+R +GKGAIM++G   S  + ++V+ +G++ LD+ALG+GG P+GRI
Sbjct: 1   MDRQKALELAISQIERSFGKGAIMRMGEDPSKLQ-VDVIPTGAIALDLALGVGGIPRGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
            EI+GPESSGKTTLALH IAQ+Q+ GG  A++DAEHA D +YA +LGVDL NLLISQPDT
Sbjct: 60  TEIFGPESSGKTTLALHVIAQAQRMGGIAAYIDAEHAFDPVYAERLGVDLDNLLISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEIT+ LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKLT +
Sbjct: 120 GEQALEITETLVRSGAVDVVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTGA 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ISRSK  ++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIR+V +IK+ +   G +
Sbjct: 180 ISRSKTAVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRKVDAIKEGNETVGTR 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            RVKVVKNK+A PF+Q EFDIMY EGIS  G L+D+     I+ KSGAW+    +RLGQG
Sbjct: 240 VRVKVVKNKVAPPFRQAEFDIMYNEGISVAGNLLDVATDLGIIRKSGAWYYLGEERLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNA 335
           REN+K FL+ N E+   IE  +RQ A
Sbjct: 300 RENAKAFLKANPELMREIEQRIRQAA 325


>gi|257871248|ref|ZP_05650901.1| recombinase A [Enterococcus gallinarum EG2]
 gi|257805412|gb|EEV34234.1| recombinase A [Enterococcus gallinarum EG2]
          Length = 348

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 201/327 (61%), Positives = 266/327 (81%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ YGKGAIM+LG +  + + I  + SGSL LD+ALG+GG+P+GRIV
Sbjct: 4   DRKAALDAALKKIEKNYGKGAIMKLGEK--VDQQISTIPSGSLALDVALGVGGYPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++ +LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKGGGTAAFIDAEHALDPQYAQKLGVNIDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+VIDSVAAL PRAEI+G+MG++  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVIDSVAALVPRAEIDGEMGDTHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+G+MFG+PETT GG ALKFYS++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEQLKSGTDIIGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E D+MYG+GIS  GEL+D+ V+  IVDKSGAW+++KG R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEVDMMYGQGISQEGELLDMAVEQDIVDKSGAWYAYKGDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K ++RE+ E+   + + +R   G+
Sbjct: 302 ENAKNYMREHQEMMMEVSARVRDAYGI 328


>gi|215254333|gb|ACJ64159.1| recombinase A [Vibrio cholerae]
          Length = 331

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 197/311 (63%), Positives = 259/311 (83%), Gaps = 2/311 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTT
Sbjct: 1   IEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L R
Sbjct: 59  LTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALAR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DS+AALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 119 SGAVDVIVVDSIAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 178

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+P
Sbjct: 179 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAP 238

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+ N+  +L+EN E
Sbjct: 239 FKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGHKIGQGKANACKYLKENPE 298

Query: 323 IAENIESLLRQ 333
           IA+ ++  LR+
Sbjct: 299 IAKTLDKKLRE 309


>gi|291519143|emb|CBK74364.1| protein RecA [Butyrivibrio fibrisolvens 16/4]
          Length = 350

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 193/324 (59%), Positives = 266/324 (82%), Gaps = 2/324 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK +AL+AA+SQI++ YGKG++M+LG   +I   +E V +GS+ LD+ALG GGFPKGRI+
Sbjct: 5   DKLRALDAAISQIEKQYGKGSVMKLGEGANI--QVETVPTGSISLDLALGQGGFPKGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH +A+ QK GG   F+DAEHALD  YA+ +GV++ +L ISQPD G
Sbjct: 63  EIYGPESSGKTTLALHAVAEVQKAGGIAGFIDAEHALDPKYAKAIGVNIDDLYISQPDNG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ +VRSGA+DIIV+DSVAAL P+AEI+GDMG+S  G+ ARLMSQA+RKLT  +
Sbjct: 123 EQALEITETMVRSGAMDIIVVDSVAALVPKAEIDGDMGDSHVGLHARLMSQAMRKLTGIV 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++ C+++FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+D+RR+ ++K    + GN+T
Sbjct: 183 AKTNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASVRIDVRRIEALKQNGEVIGNRT 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R K+VKNK+A PF++ EFDIM+GEGIS  G+++D+     IV KSGAW+++ G+++GQGR
Sbjct: 243 RAKIVKNKVAPPFREAEFDIMFGEGISREGDILDVATNLDIVQKSGAWYAYLGEKIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQN 334
           EN+K++L++N E+ E I + +R +
Sbjct: 303 ENAKMYLKQNPEVCEEIAAAIRDH 326


>gi|219669130|ref|YP_002459565.1| recA protein [Desulfitobacterium hafniense DCB-2]
 gi|219539390|gb|ACL21129.1| recA protein [Desulfitobacterium hafniense DCB-2]
          Length = 346

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/340 (62%), Positives = 276/340 (81%), Gaps = 5/340 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+ ALSQI++ +GKG+IM+LG + S    +EV+ +G L +DIALG+GG P+GR++
Sbjct: 5   DKLKALDMALSQIEKQFGKGSIMRLG-EASAKMAVEVIPTGCLAIDIALGVGGVPRGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH  A++QK GG  AF+DAEHALD +YA+ LGV++ NLL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHIAAEAQKLGGVAAFIDAEHALDPVYAKALGVNIDNLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+D+I+IDSVAAL PRAEIEG+MG+S  G+ ARLMSQALRKLT +I
Sbjct: 124 EQALEICEALVRSGAIDVIIIDSVAALVPRAEIEGEMGDSHVGLHARLMSQALRKLTGAI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S   ++FINQ+R K+G+MFG+PETTTGG ALKFY+SVRL++RR  ++K    + GN+T
Sbjct: 184 SKSNTCVIFINQIREKVGIMFGNPETTTGGRALKFYASVRLEVRRADTLKQGQDMIGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PFKQ EFDIMYGEGIS  G ++D+G +  I++KSGAW+S+KG+RLGQGR
Sbjct: 244 KVKVVKNKVAPPFKQAEFDIMYGEGISREGSMVDVGAELDIINKSGAWYSYKGERLGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQN----AGLVADSLLQEP 346
           EN K FL++N EIA  IE  +R +    +  VAD + +EP
Sbjct: 304 ENVKEFLKKNPEIAAEIEQGIRASIANVSAPVADDVQEEP 343


>gi|119946986|ref|YP_944666.1| recombination protein RecA [Psychromonas ingrahamii 37]
 gi|119865590|gb|ABM05067.1| RecA protein [Psychromonas ingrahamii 37]
          Length = 358

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/323 (66%), Positives = 272/323 (84%), Gaps = 1/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   +  E I+ VS+GSL LD+ALGIGG P GR V
Sbjct: 6   NKDKALAAALGQIEKQFGKGSIMRLGDDAASME-IDSVSTGSLSLDVALGIGGLPYGRCV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL L  IA++QK G TCAF+DAEHALD  YA+KLGVD+ NLLISQPDTG
Sbjct: 65  EVYGPESSGKTTLTLQVIAEAQKQGKTCAFIDAEHALDPTYAKKLGVDVDNLLISQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGAV ++V+DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT +I
Sbjct: 125 EQALEICDMLVRSGAVGVVVVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTGNI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ + I GN+T
Sbjct: 185 KQTNTMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKNGEEIIGNET 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF I+YG+GI+ FGEL+DLGVK   V+K+G+W+S+ G ++GQG+
Sbjct: 245 RVKVVKNKVAPPFKQAEFQILYGKGINHFGELVDLGVKQEFVEKAGSWYSYNGAKIGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L++N   AE +E+ +R+
Sbjct: 305 SNASQYLKDNPASAEELEAKIRE 327


>gi|116620140|ref|YP_822296.1| recA protein [Candidatus Solibacter usitatus Ellin6076]
 gi|116223302|gb|ABJ82011.1| recA protein [Candidatus Solibacter usitatus Ellin6076]
          Length = 355

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/332 (62%), Positives = 282/332 (84%), Gaps = 1/332 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+  ++S+ALE AL QI++ +GKG+I++LGS+ +I   + V+S+GS+ LD ALG+GGFP+
Sbjct: 1   MDEKERSRALETALGQIEKQFGKGSILRLGSKDAIVP-VSVISTGSISLDAALGVGGFPR 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI EI+GPESSGKTT+AL  +A++QK GG  AF+D EHALD  YARKLGVD+ NLL+SQ
Sbjct: 60  GRINEIFGPESSGKTTIALQVVAEAQKAGGIAAFIDVEHALDPTYARKLGVDVDNLLVSQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT  L+ SG +D++V+DSVAAL P++E++G+MG+S  G+QARLMSQALRKL
Sbjct: 120 PDYGEQALEITAHLIASGQIDVLVVDSVAALVPKSELDGEMGDSHMGVQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T S+++S+  L+FINQ+R KIGVMFG+PETTTGG ALKFYS+VRLDIRR+G+IKD D++ 
Sbjct: 180 TGSVNKSRTCLIFINQIREKIGVMFGNPETTTGGRALKFYSTVRLDIRRIGAIKDGDAVV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+T+VKVVKNK+ASPF++ EFDI+YGEG+S  G+L+DLGV  ++V+KSG+WFS+KG R+
Sbjct: 240 GNRTKVKVVKNKVASPFREAEFDIIYGEGVSKEGDLLDLGVAQNLVEKSGSWFSYKGDRI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338
           GQGREN++ FL++N +I + +++ LR+  GLV
Sbjct: 300 GQGRENARQFLKDNPDIRKAVDTELRKTLGLV 331


>gi|197303184|ref|ZP_03168226.1| hypothetical protein RUMLAC_01907 [Ruminococcus lactaris ATCC
           29176]
 gi|197297724|gb|EDY32282.1| hypothetical protein RUMLAC_01907 [Ruminococcus lactaris ATCC
           29176]
          Length = 373

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 196/328 (59%), Positives = 265/328 (80%), Gaps = 1/328 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K  N  +K KAL+AA++++++ +GKGA+M+LG  G+    +E V +G L LD+ALG+GG 
Sbjct: 10  KVTNSEEKKKALDAAIAKLEKDFGKGAVMKLGESGAHV-SVETVPTGCLSLDLALGLGGV 68

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGR++E+YGPESSGKTT+ALH I++ QK GG   F+DAEHALD +YA+ +GVD+  L I
Sbjct: 69  PKGRVIEVYGPESSGKTTVALHMISEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDELYI 128

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD+G+QALEI + +VRSGA+DIIVIDSVAAL P+ EIEGDMG+S  G+QARLMSQALR
Sbjct: 129 SQPDSGDQALEIAETMVRSGAIDIIVIDSVAALVPKQEIEGDMGDSHVGLQARLMSQALR 188

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT  IS+S C+++FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+D+RR+ ++K    
Sbjct: 189 KLTPVISKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASVRMDVRRIETLKQNGE 248

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           I GN+TR+K+VKNK+A PFK+ EFDIM+G+GIS  G+++DL  K  IV KSGAW++++G 
Sbjct: 249 IVGNRTRIKIVKNKIAPPFKEAEFDIMFGKGISREGDILDLASKIDIVKKSGAWYAYEGD 308

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLR 332
           ++GQGREN+K +L  + E+ E IE  +R
Sbjct: 309 KIGQGRENAKSYLESHPEVMEEIERKVR 336


>gi|317011998|gb|ADU82606.1| recombinase A [Helicobacter pylori Lithuania75]
          Length = 347

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/327 (62%), Positives = 264/327 (80%), Gaps = 3/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+  A+ QI +V+GKGA+++LG +    E I+ +S+GSLGLD+ALGIGG PKGRI+
Sbjct: 6   DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDSISTGSLGLDLALGIGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  +
Sbjct: 124 EQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ S+K  +   GN+
Sbjct: 184 HKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIASLKQNEQHIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF++ EFDIM+GEGIS  GE+ID GVK  IVDKSGAW S++ ++LGQG
Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336
           REN+K  L+E+  +A  I   ++++ G
Sbjct: 304 RENAKALLKEDKALANEITLKIKESIG 330


>gi|209922124|gb|ACI96110.1| recombinase A [Vibrio cholerae]
          Length = 331

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 198/311 (63%), Positives = 259/311 (83%), Gaps = 2/311 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTT
Sbjct: 1   IEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L R
Sbjct: 59  LTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALAR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 119 SGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 178

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+P
Sbjct: 179 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAP 238

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+ N+  +L+EN E
Sbjct: 239 FKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYHGDKIGQGKANACKYLKENPE 298

Query: 323 IAENIESLLRQ 333
           IA+ ++  LR+
Sbjct: 299 IAKTLDKKLRE 309


>gi|317504792|ref|ZP_07962750.1| recombination protein A [Prevotella salivae DSM 15606]
 gi|315664067|gb|EFV03776.1| recombination protein A [Prevotella salivae DSM 15606]
          Length = 339

 Score =  428 bits (1100), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 209/323 (64%), Positives = 271/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AA+S+I++ +GKG+IM++G +    E ++V+ SGS+GL++ALG+GG+P+GRI+
Sbjct: 12  EKLKALQAAMSKIEKDFGKGSIMRMGDEQ--IENVDVIPSGSIGLNVALGVGGYPRGRII 69

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD G
Sbjct: 70  EIYGPESSGKTTLALHAIAEAQKMGGIAAFIDAEHAFDRFYAEKLGVDVDNLWISQPDNG 129

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL+I D L+RS A+DI+V+DSVAALTP+ EIEGDMG+++ G+QARLMSQALRKLTS+I
Sbjct: 130 EQALQIADELIRSSAIDILVVDSVAALTPKKEIEGDMGDNVVGLQARLMSQALRKLTSTI 189

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++    +FINQ+R KIGVMFGSPETTTGGNALKFYSSVRLDIRRV S+KD D+I GNQ 
Sbjct: 190 SKTNTCCIFINQLREKIGVMFGSPETTTGGNALKFYSSVRLDIRRVTSLKDGDNIIGNQV 249

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++VEF+I++GEGIS  GE++DLGV+  I+ KSG+WFS+   +L QGR
Sbjct: 250 RVKVVKNKVAPPFRKVEFEILFGEGISKVGEILDLGVEYGIIQKSGSWFSYNSSKLAQGR 309

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           + +K  LR+N E+ + +E  +RQ
Sbjct: 310 DATKNLLRDNPELCDELEGQIRQ 332


>gi|283853919|ref|ZP_06371129.1| recA protein [Desulfovibrio sp. FW1012B]
 gi|283570696|gb|EFC18746.1| recA protein [Desulfovibrio sp. FW1012B]
          Length = 360

 Score =  428 bits (1100), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 209/348 (60%), Positives = 273/348 (78%), Gaps = 3/348 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +++AL  AL+ I+R +G+GA+M+L  + S    I  + +GS+GLD+ALGIGG PKGR+ E
Sbjct: 13  RNEALATALTTIERKHGQGAVMRL--EDSAHVKIPSIPTGSIGLDLALGIGGIPKGRMTE 70

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH IA+SQK GGT AF+DAEHALD  YA++LGV    LLISQPD GE
Sbjct: 71  IYGPESSGKTTLALHIIAESQKLGGTAAFIDAEHALDVNYAKRLGVKTTELLISQPDYGE 130

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL+I D+LVRSGAVD++VIDSVAAL P+AE+EG+MGE+  G QARLMS A+RKLT +I 
Sbjct: 131 QALDIADLLVRSGAVDVVVIDSVAALIPQAELEGEMGETQVGGQARLMSHAMRKLTGTIH 190

Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +S   ++FINQ+RMKIG+  +GSPETTTGGNALKFY+SVRLDIRR+ ++KDK+   G++ 
Sbjct: 191 KSHTAVIFINQIRMKIGMTGYGSPETTTGGNALKFYASVRLDIRRIQTLKDKEETYGSRC 250

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++  FDI+YG G+S  GELID+GV+A IVDKSGAWF+F  +RLGQGR
Sbjct: 251 RVKVVKNKVAPPFREALFDILYGTGVSREGELIDMGVEAGIVDKSGAWFAFGSERLGQGR 310

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           +N + FL+E+ +I + IE  LR++ G    +    P +  + + + DD
Sbjct: 311 DNVRSFLQEHTDIRDQIEGKLREHLGFAEYTPPPAPEVEGEAEQEADD 358


>gi|331085030|ref|ZP_08334117.1| recA [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330408730|gb|EGG88195.1| recA [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 347

 Score =  428 bits (1100), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 198/327 (60%), Positives = 265/327 (81%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+AA++++++ +GKGA+M+LG   +    +E V +GSL LDIALG+GG PKGRI+
Sbjct: 5   DKLKALDAAIAKLEKDFGKGAVMKLGDAAANVS-VETVPTGSLSLDIALGLGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ QK GG   F+DAEHALD +YA+ +GVD+  L ISQPD+G
Sbjct: 64  EIYGPESSGKTTVALHMIAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDELYISQPDSG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           +QALEIT+ +VRSGA+DIIV+DSVAAL PR EIEGDMG+S  G+QARLMSQALRKLT  I
Sbjct: 124 DQALEITETMVRSGAMDIIVVDSVAALVPRQEIEGDMGDSHVGLQARLMSQALRKLTPVI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S C+++FINQ+R K+GVMFG+PETTTGG ALKFY+S+R+D+RR  ++K    + GN+T
Sbjct: 184 SKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASIRMDVRRTETLKQGGEMVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PFK+ EFDIM+G+GIS  G+++DL     I++KSGAW+++ G ++GQGR
Sbjct: 244 RIKVVKNKIAPPFKEAEFDIMFGKGISKEGDILDLAAGLDIINKSGAWYAYNGDKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K +L  + E+ E IE+ +R +  L
Sbjct: 304 ENAKTYLSTHPEVMEEIETKVRAHYKL 330


>gi|93278392|gb|ABF06626.1| RecA [Mycobacterium gadium]
          Length = 312

 Score =  428 bits (1100), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 201/309 (65%), Positives = 258/309 (83%), Gaps = 2/309 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE AL+QI++ +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 6   DREKALELALAQIEKNHGKGSVMRLGEE--VRQPISVIPTGSIALDVALGIGGLPRGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+T
Sbjct: 184 SNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   V KSG+WF+++G++LGQG+
Sbjct: 244 RVKVVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEHGFVRKSGSWFTYEGEQLGQGK 303

Query: 311 ENSKIFLRE 319
           EN++ FL E
Sbjct: 304 ENARNFLLE 312


>gi|215254335|gb|ACJ64160.1| recombinase A [Vibrio cholerae]
 gi|223047500|gb|ACM79823.1| recombinase A [Vibrio cholerae]
 gi|223047502|gb|ACM79824.1| recombinase A [Vibrio cholerae]
          Length = 331

 Score =  428 bits (1100), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 198/311 (63%), Positives = 259/311 (83%), Gaps = 2/311 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTT
Sbjct: 1   IEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L R
Sbjct: 59  LTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALAR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 119 SGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 178

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+P
Sbjct: 179 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAP 238

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+ N+  +L+EN E
Sbjct: 239 FKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKENPE 298

Query: 323 IAENIESLLRQ 333
           IA+ ++  LR+
Sbjct: 299 IAKTLDKKLRE 309


>gi|325661213|ref|ZP_08149840.1| recA [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325472720|gb|EGC75931.1| recA [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 347

 Score =  428 bits (1100), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 198/327 (60%), Positives = 265/327 (81%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+AA++++++ +GKGA+M+LG   +    +E V +GSL LDIALG+GG PKGRI+
Sbjct: 5   DKLKALDAAIAKLEKDFGKGAVMKLGDAAANVS-VETVPTGSLSLDIALGLGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ QK GG   F+DAEHALD +YA+ +GVD+  L ISQPD+G
Sbjct: 64  EIYGPESSGKTTVALHMIAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDELYISQPDSG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           +QALEIT+ +VRSGA+DIIV+DSVAAL PR EIEGDMG+S  G+QARLMSQALRKLT  I
Sbjct: 124 DQALEITETMVRSGAMDIIVVDSVAALVPRQEIEGDMGDSHVGLQARLMSQALRKLTPVI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S C+++FINQ+R K+GVMFG+PETTTGG ALKFY+S+R+D+RR  ++K    + GN+T
Sbjct: 184 SKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASIRMDVRRTETLKQGGEMVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PFK+ EFDIM+G+GIS  G+++DL     I++KSGAW+++ G ++GQGR
Sbjct: 244 RIKVVKNKIAPPFKEAEFDIMFGKGISKEGDILDLAAGLDIINKSGAWYAYNGDKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K +L  + E+ E IE+ +R +  L
Sbjct: 304 ENAKTYLSTHPEVMEEIEAKVRAHYKL 330


>gi|215254337|gb|ACJ64161.1| recombinase A [Vibrio cholerae]
          Length = 331

 Score =  428 bits (1100), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 198/311 (63%), Positives = 259/311 (83%), Gaps = 2/311 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTT
Sbjct: 1   IEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L R
Sbjct: 59  LTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALAR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 119 SGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 178

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+P
Sbjct: 179 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAP 238

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+ N+  +L+EN E
Sbjct: 239 FKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKENPE 298

Query: 323 IAENIESLLRQ 333
           IA+ ++  LR+
Sbjct: 299 IAKTLDKKLRE 309


>gi|228992467|ref|ZP_04152395.1| hypothetical protein bpmyx0001_32080 [Bacillus pseudomycoides DSM
           12442]
 gi|228767288|gb|EEM15923.1| hypothetical protein bpmyx0001_32080 [Bacillus pseudomycoides DSM
           12442]
          Length = 341

 Score =  428 bits (1100), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/339 (60%), Positives = 270/339 (79%), Gaps = 3/339 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG Q      I  + SGSL LD+ALG+GG+P+GR++
Sbjct: 3   DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RRISTIPSGSLALDVALGVGGYPRGRVI 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPDTG
Sbjct: 61  EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI + LVRSGA+DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQGLEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   +K  + I GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYGEGIS  GE++D+  +  IV KSGAW+S+  +RLGQGR
Sbjct: 241 KIKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS-LLQEPAI 348
           EN+K FL+EN E+ + I   +R++ G+  DS  L+E AI
Sbjct: 301 ENAKQFLKENPELRDEIAFFIREHHGIGEDSGNLEEGAI 339


>gi|308182328|ref|YP_003926455.1| recombinase A [Helicobacter pylori PeCan4]
 gi|308064513|gb|ADO06405.1| recombinase A [Helicobacter pylori PeCan4]
 gi|317008826|gb|ADU79406.1| recombinase A [Helicobacter pylori India7]
          Length = 347

 Score =  428 bits (1100), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/327 (61%), Positives = 264/327 (80%), Gaps = 3/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+  A+ QI +V+GKGA+++LG +    E I+ +S+GSLGLD+ALGIGG PKGRI+
Sbjct: 6   DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDAISTGSLGLDLALGIGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  +
Sbjct: 124 EQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+
Sbjct: 184 HKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF++ EFDIM+GEGIS  GE+ID GVK  IVDKSGAW S++ ++LGQG
Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336
           REN+K  L+E+  +A  I   ++++ G
Sbjct: 304 RENAKALLKEDKALANEITLKIKESIG 330


>gi|193806432|sp|P0C7T0|RECA_LEPME RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|1049197|gb|AAC43586.1| RecA [Leptospira biflexa]
 gi|1586560|prf||2204257A recA gene
          Length = 387

 Score =  428 bits (1100), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 211/351 (60%), Positives = 273/351 (77%), Gaps = 4/351 (1%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           D  +E     + +A++AAL QI++ +GKG+IM+LG+   + E + VVS+GSL LDIALGI
Sbjct: 7   DKAQEKETDQRKQAIDAALGQIEKQFGKGSIMRLGADTRMAE-MNVVSTGSLDLDIALGI 65

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GGFP GRIVEIYGPESSGKTTL L  IA++QK GG  AF+DAEHALD  YA+KLGV++ +
Sbjct: 66  GGFPSGRIVEIYGPESSGKTTLTLSAIAETQKKGGIAAFIDAEHALDPSYAKKLGVNVDD 125

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL++QPD GE+ALEI + LVRS A+D+IVIDSVAAL P+AEIEGDMG+S  G+QARLMSQ
Sbjct: 126 LLVAQPDNGEEALEICESLVRSNAIDLIVIDSVAALVPKAEIEGDMGDSHMGLQARLMSQ 185

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT +IS+S   ++FINQ+RMKIGVMFGSPETTTGGNALKFY+S+RLDIRR+ ++K+
Sbjct: 186 ALRKLTGTISKSNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASIRLDIRRIETLKE 245

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
           K+   GN+ RVKVVKNK A PF+Q EFDIMY  GI+    LIDL V+  +V K+G+W+S+
Sbjct: 246 KEEPVGNRVRVKVVKNKCAPPFRQAEFDIMYANGINRESSLIDLAVRHDLVAKAGSWYSY 305

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
            G+++GQG+E  K F  EN +IA  IE+ +R    L    L+ +  I T++
Sbjct: 306 GGEKIGQGKEQVKNFFLENPDIAFKIENQVRDLNSL---PLMDQSKIQTRE 353


>gi|300743996|ref|ZP_07073016.1| protein RecA [Rothia dentocariosa M567]
 gi|311113248|ref|YP_003984470.1| recombination protein A [Rothia dentocariosa ATCC 17931]
 gi|300380357|gb|EFJ76920.1| protein RecA [Rothia dentocariosa M567]
 gi|310944742|gb|ADP41036.1| recombination protein A [Rothia dentocariosa ATCC 17931]
          Length = 370

 Score =  428 bits (1100), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/317 (63%), Positives = 257/317 (81%), Gaps = 2/317 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           ++KALEA +++I + YGKGAIM+LG + ++    EV+S+G++ LD ALGIGG P+GR++E
Sbjct: 18  RAKALEAVMAKIDKDYGKGAIMRLGDKETV--KTEVISTGAIALDAALGIGGLPRGRVIE 75

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH +A  QK GG  AF+DAEHALD +YA KLGVD   LL+SQPDTGE
Sbjct: 76  IYGPESSGKTTVALHAVANVQKAGGIAAFIDAEHALDPVYAAKLGVDTDALLVSQPDTGE 135

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DMLV SGAVDI+V+DSVAAL PRAEI+GDMG+S  G+QARLMSQALRK+T  ++
Sbjct: 136 QALEIMDMLVGSGAVDIVVVDSVAALVPRAEIDGDMGDSHVGLQARLMSQALRKITGRLA 195

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
            +    +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+DIRR+ ++KD  +  GN+TR
Sbjct: 196 STGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDIRRIETLKDGANPIGNKTR 255

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
            K+VKNKMA PFKQ EFDI+YGEGIS  G ++DL V+  IV KSGAWF++ G++LGQGRE
Sbjct: 256 AKIVKNKMAPPFKQAEFDILYGEGISVEGGILDLAVEHDIVKKSGAWFTYDGEQLGQGRE 315

Query: 312 NSKIFLRENIEIAENIE 328
           N +  L++N E+ E ++
Sbjct: 316 NVRKLLKDNPELTEELQ 332


>gi|116670021|ref|YP_830954.1| recombinase A [Arthrobacter sp. FB24]
 gi|166199596|sp|A0JUY4|RECA_ARTS2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|116610130|gb|ABK02854.1| recA protein [Arthrobacter sp. FB24]
          Length = 351

 Score =  428 bits (1100), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 201/327 (61%), Positives = 265/327 (81%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+AAL+QI + +GKG++M+LG +  +   IEV+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 6   DRQKALDAALAQIDKQFGKGSVMRLGDE--VRAPIEVIPTGSIALDVALGIGGLPRGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD   LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHALDPEYAAKLGVDTDALLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+ SG++D+IVIDSVAAL PRAEIEGDMG+S  G+QARLMSQALRK+T  +
Sbjct: 124 EQALEIMDMLIGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKITGRL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ ++K+     GN+T
Sbjct: 184 SQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQTLKEGADSVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           + K+VKNKMA PFK  EFDI+YG+GIS  G +ID+GV+  ++ KSG+WF++ G +LGQG 
Sbjct: 244 KAKIVKNKMAPPFKIAEFDIIYGQGISREGGIIDMGVEHGLIKKSGSWFTYDGDQLGQGM 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           ENS+ FLR+N E+A  +E L+++  G+
Sbjct: 304 ENSRRFLRDNPELAAELERLIKEKLGV 330


>gi|15488442|gb|AAL01117.1|AF410431_1 RecA [Leptospira biflexa serovar Patoc]
          Length = 387

 Score =  428 bits (1100), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 209/341 (61%), Positives = 271/341 (79%), Gaps = 4/341 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + +A++AAL QI++ +GKG+IM+LG+   + E + VVS+GSL LDIALGIGGFP GRI+E
Sbjct: 17  RKQAIDAALGQIEKQFGKGSIMRLGADTRMSE-MNVVSTGSLDLDIALGIGGFPSGRIIE 75

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL L  IA++QK GG  AF+DAEHALD  YA+KLGV++ +LL++QPD GE
Sbjct: 76  IYGPESSGKTTLTLSAIAETQKKGGIAAFIDAEHALDPSYAKKLGVNVDDLLVAQPDNGE 135

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           +ALEI + LVRS A+D+IVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT +IS
Sbjct: 136 EALEICESLVRSNAIDLIVIDSVAALVPKAEIEGDMGDSHMGLQARLMSQALRKLTGTIS 195

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S   ++FINQ+RMKIGVMFGSPETTTGGNALKFY+S+RLDIRR+ ++K+K+   GN+ R
Sbjct: 196 KSSTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASIRLDIRRIETLKEKEEPVGNRVR 255

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK A PF+Q EFDIMY  GI+    LIDL V+  +V K+G+W+S+ G+++GQG+E
Sbjct: 256 VKVVKNKCAPPFRQAEFDIMYANGINRESSLIDLAVRHDLVAKAGSWYSYNGEKIGQGKE 315

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
             + F  EN +IA  IE+ +R    L A  LL +  I T++
Sbjct: 316 QVRNFFLENPDIAFKIENQVRN---LNALPLLDQAKIQTRE 353


>gi|323344367|ref|ZP_08084592.1| recombination protein A [Prevotella oralis ATCC 33269]
 gi|323094494|gb|EFZ37070.1| recombination protein A [Prevotella oralis ATCC 33269]
          Length = 343

 Score =  428 bits (1100), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/322 (65%), Positives = 267/322 (82%), Gaps = 2/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+AA+S+I++ +GKG+IM++G +    E +EV+ +GS+GLD ALG+GG+P+GRI+E
Sbjct: 18  KLKALQAAMSKIEKDFGKGSIMRMGDEQ--IENVEVIPTGSIGLDAALGVGGYPRGRIIE 75

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD GE
Sbjct: 76  IYGPESSGKTTLALHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDNGE 135

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RS A+DI+VIDSVAALTP+ EIEGDMG+S  G+QARLMSQALRKLT +IS
Sbjct: 136 QALEIADQLIRSSAIDILVIDSVAALTPKKEIEGDMGDSAVGLQARLMSQALRKLTGTIS 195

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR++ SIKD D I GNQ R
Sbjct: 196 KTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRKITSIKDGDQIVGNQVR 255

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF++ EF+I +GEGIS  GEL+DLGV+ +I+ KSG+WFS+ G +L QGR+
Sbjct: 256 VKVVKNKVAPPFRKAEFEIPFGEGISKVGELLDLGVEFNIIQKSGSWFSYNGSKLAQGRD 315

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
            +K  L++N E+ E +ES ++Q
Sbjct: 316 ATKTLLKDNPELCEELESQIKQ 337


>gi|205373469|ref|ZP_03226272.1| recombination protein A [Bacillus coahuilensis m4-4]
          Length = 345

 Score =  428 bits (1100), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/327 (63%), Positives = 264/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG Q      I  +SSGS+ LD ALG+GG+P+GRIV
Sbjct: 4   DRQAALDMALKQIEKQFGKGSIMKLGEQQD--RKISTISSGSVTLDTALGVGGYPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ Q  GG  AF+DAEHALD +YA+KLGV++  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTVALHAIAEVQAQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDI+VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I
Sbjct: 122 EQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR  ++K  + + GN+T
Sbjct: 182 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMVGNKT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYGEGIS  GE+IDLG    IV KSG+W+S+  +RLGQGR
Sbjct: 242 KIKVVKNKVAPPFRVAEVDIMYGEGISKEGEIIDLGSDLDIVQKSGSWYSYNEERLGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K FL+EN +I + I   +R++ GL
Sbjct: 302 ENAKQFLKENPDIRQEILLKIREHYGL 328


>gi|271963745|ref|YP_003337941.1| RecA protein [Streptosporangium roseum DSM 43021]
 gi|270506920|gb|ACZ85198.1| RecA protein [Streptosporangium roseum DSM 43021]
          Length = 366

 Score =  428 bits (1100), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 204/331 (61%), Positives = 265/331 (80%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KALE AL+QI+R +GKG++M+LG +      IEV+ + S+ LD+ALGIGGFP+
Sbjct: 1   MAANDREKALETALAQIERQFGKGSVMRLGDE--TRAPIEVIPTSSIALDVALGIGGFPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVE+YGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA+KLGVD   LL+SQ
Sbjct: 59  GRIVEVYGPESSGKTTVALHAVANAQRGGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI DML+RSGAVD++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDTGEQALEIADMLIRSGAVDLLVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKV 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
             +++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     
Sbjct: 179 AGALNNTGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDIRRIETLKDGTEAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNKMA PF+  +FDI+YG GIS  G LID+GV+   V KSGAW++++G +L
Sbjct: 239 GNRTRVKVVKNKMAPPFRVADFDILYGIGISREGGLIDMGVEHGFVRKSGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FL+ + ++A  IE  +++  G+
Sbjct: 299 GQGKENARNFLKNHPDMANEIEKKIKEKLGI 329


>gi|47571278|gb|AAT35796.1| RecA [Mycobacterium xenopi]
          Length = 324

 Score =  428 bits (1100), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 199/318 (62%), Positives = 259/318 (81%), Gaps = 2/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI++ YGKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GRIV
Sbjct: 6   DREKALELAVAQIEKSYGKGSVMRLGDESR--QPISVIPTGSIALDVALGIGGLPRGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQA+RK+  ++
Sbjct: 124 EQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQAMRKMAGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLD+ R+ ++KD     GN+T
Sbjct: 184 NNSGTTAIFINQLREKVGVMFGSPETTTGGKALKFYASVRLDVSRIETLKDGTDAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK A PF+Q E DI+YG+GIS  G LID+GV   ++ KSGAWF+++G++LGQG+
Sbjct: 244 RIKVVKNKCAPPFRQAELDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIE 328
           EN++ FL +N ++A  IE
Sbjct: 304 ENARNFLLQNTDVANEIE 321


>gi|118581580|ref|YP_902830.1| recombinase A [Pelobacter propionicus DSM 2379]
 gi|118504290|gb|ABL00773.1| recA protein [Pelobacter propionicus DSM 2379]
          Length = 340

 Score =  428 bits (1100), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/341 (62%), Positives = 280/341 (82%), Gaps = 9/341 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K++A++ ALSQI++ +GKGA+M+LG+  ++  G+E +S+GS+ LD+ALG+GG P+GRIV
Sbjct: 9   EKNRAIDLALSQIEKQFGKGAVMRLGNDEAL-PGVEAISTGSISLDMALGVGGVPRGRIV 67

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH +A++ K GG  AFVDAEHALD  YARKLGV   +LL+SQPDTG
Sbjct: 68  EIYGPESSGKTTLALHIVAEAMKQGGIAAFVDAEHALDIGYARKLGVKTDDLLVSQPDTG 127

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+D++VIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  I
Sbjct: 128 EQALEIAETLVRSGAIDVLVIDSVAALVPKAEIEGDMGDSHMGLQARLMSQALRKLTGII 187

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S C ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIR++ ++K  D++ G++T
Sbjct: 188 SKSNCCVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRKIATLKQGDAVIGSRT 247

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF++VEFDI+YGEGIS  G+++DL V   IV+KSGAW+S+  +R+GQGR
Sbjct: 248 KVKVVKNKVAPPFREVEFDILYGEGISRTGDVLDLAVDKGIVEKSGAWYSYGKERIGQGR 307

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           ENS+ FL E+ E+  +IE  L          LL+ PA+  +
Sbjct: 308 ENSRTFLTEHPEVLADIEGKLMD--------LLRGPAVTNE 340


>gi|162424781|gb|ABX90068.1| RecA protein [Burkholderia mimosarum]
          Length = 279

 Score =  427 bits (1099), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/280 (72%), Positives = 246/280 (87%), Gaps = 1/280 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRLGD-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I ++ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKKTNCMVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + G++TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGSETRVKVVKNKVSPPFREAVFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQG
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYSGERIGQG 279


>gi|260578890|ref|ZP_05846795.1| recombinase A [Corynebacterium jeikeium ATCC 43734]
 gi|258602980|gb|EEW16252.1| recombinase A [Corynebacterium jeikeium ATCC 43734]
          Length = 375

 Score =  427 bits (1099), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/318 (63%), Positives = 261/318 (82%), Gaps = 2/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+SKALE A++QI++ +GKGAIM+LG        I+ +SSGS+ ++ ALGIGGFP+GR+V
Sbjct: 14  DRSKALELAMAQIEKDFGKGAIMRLGD--DTRPPIQAISSGSIAINAALGIGGFPRGRVV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA++Q+ GG  AFVDAEHALD  YAR LGVD   LL+SQPDTG
Sbjct: 72  EIYGPESSGKTTVALHAIAEAQRAGGIAAFVDAEHALDPEYARALGVDTDALLVSQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DIIV+DSVAALTP+AEI+GDMG+S  G+QARLMSQALRK+T ++
Sbjct: 132 EQALEIADMLIRSGAIDIIVVDSVAALTPKAEIDGDMGDSHVGLQARLMSQALRKMTGAL 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR DIRR+ ++KD   + GN+T
Sbjct: 192 YQTGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRIQALKDGQDVVGNRT 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK++ PFK  EFDI+YGEGIS  G +IDLGV+  ++ KSG+WF++ G +LGQG+
Sbjct: 252 RLKVVKNKVSPPFKIAEFDILYGEGISREGSIIDLGVETGLIKKSGSWFTYDGDQLGQGK 311

Query: 311 ENSKIFLRENIEIAENIE 328
           E ++ FL+ N +++  +E
Sbjct: 312 EKAREFLKNNRDLSAELE 329


>gi|15895091|ref|NP_348440.1| recombinase A [Clostridium acetobutylicum ATCC 824]
 gi|18202287|sp|P58254|RECA_CLOAB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|15024789|gb|AAK79780.1|AE007690_7 RECA recombinase, ATPase [Clostridium acetobutylicum ATCC 824]
 gi|325509229|gb|ADZ20865.1| recombinase A [Clostridium acetobutylicum EA 2018]
          Length = 349

 Score =  427 bits (1099), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/327 (64%), Positives = 272/327 (83%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KA++AA+SQI++ +GKGAIM+LG Q  +   I+ +S+G L LDIALGIGG P+GR+V
Sbjct: 4   EKLKAIDAAMSQIEKQFGKGAIMKLGEQDIL--NIDAISTGCLSLDIALGIGGVPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A++QK GG  AF+DAEHALD  YAR LGVD+ NL++SQPDTG
Sbjct: 62  EIYGPESSGKTTVALHILAEAQKKGGAAAFIDAEHALDPQYARALGVDIDNLVVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+D+IV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT SI
Sbjct: 122 EQALEIAEALVRSGAIDVIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SKCI +FINQ+R K+G+MFG+PETT GG ALKFY+SVR+DIR++ +IK  + + GN+ 
Sbjct: 182 NKSKCIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRMDIRKIDTIKQGEEMIGNRV 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDIMY EGIS  G ++D+GVK +I+ KSGAWFS+   RLGQGR
Sbjct: 242 RVKVVKNKVAPPFKQAEFDIMYNEGISREGNIVDVGVKENIIQKSGAWFSYGDIRLGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K+F +ENI+I   +E+ +R+   L
Sbjct: 302 ENAKLFFKENIDIRSEVENKIREKYDL 328


>gi|126662800|ref|ZP_01733799.1| recombinase A [Flavobacteria bacterium BAL38]
 gi|126626179|gb|EAZ96868.1| recombinase A [Flavobacteria bacterium BAL38]
          Length = 334

 Score =  427 bits (1099), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 200/327 (61%), Positives = 260/327 (79%), Gaps = 6/327 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+  L ++ + YGKG +M+LG   S  E IE + SGSLG+D+ALG+ G+P+GR++E
Sbjct: 8   KLKALQLTLDKLDKTYGKGTVMKLGD--SAVEEIEAIPSGSLGIDLALGVNGYPRGRVIE 65

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA++QK GG  AF+DAEHA D  YA KLG+D+ NL+ISQPD GE
Sbjct: 66  IYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAEHAFDRFYAEKLGIDIDNLIISQPDNGE 125

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI + L+RSGAVDI+VIDSVAALTP++EIEGDMG+S  G+ ARLMSQALRKLT +I 
Sbjct: 126 QALEIAESLIRSGAVDIVVIDSVAALTPKSEIEGDMGDSKMGLHARLMSQALRKLTGTIH 185

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++ C + FINQ+R KIGVMFGSPETTTGGNALKFY+SVR+DIR+   IKD D++ GN+T+
Sbjct: 186 KTNCTVFFINQLRDKIGVMFGSPETTTGGNALKFYASVRIDIRKSTQIKDGDNVLGNRTK 245

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNK+A PF+  EFDIMYGEGIS  GE++DL V+  ++ KSG+WFS+   +LGQGR+
Sbjct: 246 VKIVKNKVAPPFRTAEFDIMYGEGISKVGEVLDLAVEFEVIKKSGSWFSYGETKLGQGRD 305

Query: 312 NSKIFLRENIEIAENIES----LLRQN 334
             K  +++N E+ + +E     L+++N
Sbjct: 306 AVKALIKDNPELMDELEQKIKDLIKEN 332


>gi|183221815|ref|YP_001839811.1| recombinase A [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189911887|ref|YP_001963442.1| recombinase A [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|193806431|sp|B0SLE9|RECA_LEPBP RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238687836|sp|B0SCX2|RECA_LEPBA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|167776563|gb|ABZ94864.1| RecA recombinase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167780237|gb|ABZ98535.1| Protein RecA (Recombinase A) [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 387

 Score =  427 bits (1099), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 209/341 (61%), Positives = 271/341 (79%), Gaps = 4/341 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + +A++AAL QI++ +GKG+IM+LG+   + E + VVS+GSL LDIALGIGGFP GRI+E
Sbjct: 17  RKQAIDAALGQIEKQFGKGSIMRLGADTRMSE-MNVVSTGSLDLDIALGIGGFPSGRIIE 75

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL L  IA++QK GG  AF+DAEHALD  YA+KLGV++ +LL++QPD GE
Sbjct: 76  IYGPESSGKTTLTLSAIAETQKKGGIAAFIDAEHALDPSYAKKLGVNVDDLLVAQPDNGE 135

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           +ALEI + LVRS A+D+IVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT +IS
Sbjct: 136 EALEICESLVRSNAIDLIVIDSVAALVPKAEIEGDMGDSHMGLQARLMSQALRKLTGTIS 195

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S   ++FINQ+RMKIGVMFGSPETTTGGNALKFY+S+RLDIRR+ ++K+K+   GN+ R
Sbjct: 196 KSSTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASIRLDIRRIETLKEKEEPVGNRVR 255

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK A PF+Q EFDIMY  GI+    LIDL V+  +V K+G+W+S+ G+++GQG+E
Sbjct: 256 VKVVKNKCAPPFRQAEFDIMYANGINRESSLIDLAVRHDLVAKAGSWYSYNGEKIGQGKE 315

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
             + F  EN +IA  IE+ +R    L A  LL +  I T++
Sbjct: 316 QVRNFFLENPDIAFKIENQVRD---LNALPLLDQAKIQTRE 353


>gi|125973565|ref|YP_001037475.1| recA protein [Clostridium thermocellum ATCC 27405]
 gi|256003384|ref|ZP_05428375.1| recA protein [Clostridium thermocellum DSM 2360]
 gi|281417770|ref|ZP_06248790.1| recA protein [Clostridium thermocellum JW20]
 gi|125713790|gb|ABN52282.1| RecA protein [Clostridium thermocellum ATCC 27405]
 gi|255992674|gb|EEU02765.1| recA protein [Clostridium thermocellum DSM 2360]
 gi|281409172|gb|EFB39430.1| recA protein [Clostridium thermocellum JW20]
 gi|316940193|gb|ADU74227.1| recA protein [Clostridium thermocellum DSM 1313]
          Length = 349

 Score =  427 bits (1099), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/326 (63%), Positives = 272/326 (83%), Gaps = 2/326 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           +++K KALE  L QI++ +GKGA+M+LG    +   IE + +G+LGLDIALG+GG P+GR
Sbjct: 1   MIEKKKALEMVLGQIEKQFGKGAVMKLGENTHM--NIETIPTGALGLDIALGVGGVPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEI+GPESSGKTT+ALH IA++QK GG  AF+DAEHALD +YA+ LGVD++NL++SQPD
Sbjct: 59  IVEIFGPESSGKTTVALHIIAEAQKAGGEAAFIDAEHALDPVYAKNLGVDIENLIVSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGA+D+IVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL  
Sbjct: 119 TGEQALEIAEALVRSGAIDVIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            I++S+   +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+RR+ SIK  + + G+
Sbjct: 179 VINKSRTTAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRRLESIKQGNEVIGS 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T+VKVVKNK+A PFK+ EFDI+YG+GIS  G ++D+ V   IV+KSGAWFS+ GQ++GQ
Sbjct: 239 RTKVKVVKNKVAPPFKEAEFDIIYGQGISKEGNILDVAVNLDIVNKSGAWFSYNGQKIGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQN 334
           GREN+K FL+EN EIA+ IE+ +R+N
Sbjct: 299 GRENAKQFLKENPEIAKEIETKIREN 324


>gi|325567602|ref|ZP_08144269.1| recombination protein A [Enterococcus casseliflavus ATCC 12755]
 gi|325159035|gb|EGC71181.1| recombination protein A [Enterococcus casseliflavus ATCC 12755]
          Length = 355

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/338 (60%), Positives = 271/338 (80%), Gaps = 3/338 (0%)

Query: 1   MDYRKEMNIVDKSKA-LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIAL 59
           M+ R+ + + D  KA L+AAL +I++ YGKGAIM+LG +  + + I  + SGSL LD+AL
Sbjct: 1   MNIRRIIRLADDRKAALDAALKKIEKNYGKGAIMKLGEK--VDQQISTIPSGSLALDVAL 58

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           G+GG+P+GRIVE+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++
Sbjct: 59  GVGGYPRGRIVEVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNI 118

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
            +LL+SQPDTGEQ LEI D LV SGAVDI+VIDSVAAL PRAEI+G+MG++  G+QARLM
Sbjct: 119 DDLLLSQPDTGEQGLEIADALVSSGAVDIVVIDSVAALVPRAEIDGEMGDTHVGLQARLM 178

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           SQALRKL+ SI+++K I +FINQ+R K+G+MFG+PETT GG ALKFYS++RL++RR   +
Sbjct: 179 SQALRKLSGSINKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEQL 238

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           K    I GN+T++KVVKNK+A PFK  E D+MYG GIS  GEL+D+ V+  IVDKSGAW+
Sbjct: 239 KSGTDIIGNRTKIKVVKNKVAPPFKVAEVDMMYGLGISQEGELLDMAVEQDIVDKSGAWY 298

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           ++KG R+GQGREN+K ++RE+ E+   + + +R   G+
Sbjct: 299 AYKGDRIGQGRENAKNYMREHQEMMLEVSARVRDAYGI 336


>gi|320094021|ref|ZP_08025846.1| recombination protein A [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979065|gb|EFW10583.1| recombination protein A [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 375

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/347 (59%), Positives = 268/347 (77%), Gaps = 5/347 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D++KAL+ ALSQI + +GKG++M+LG        ++V+ +GSL LD+ALGIGG P+GR++
Sbjct: 29  DRNKALQVALSQIDKQFGKGSVMRLGDDSR--PPVQVIPTGSLALDVALGIGGLPRGRVI 86

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +QK GG  AF+DAEHALD +YAR LGVD  +LL+SQPDTG
Sbjct: 87  EIYGPESSGKTTVALHAVANAQKAGGNAAFIDAEHALDPVYARALGVDTDSLLVSQPDTG 146

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSG +DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 147 EQALEIADMLIRSGGIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 206

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S +    +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+  +  GN+T
Sbjct: 207 SATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKEAGAPVGNRT 266

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R KVVKNKMA PFKQ EFDI+YG+GIS  G +ID+GV   IV KSG+WF++   +LGQG+
Sbjct: 267 RAKVVKNKMAPPFKQAEFDIVYGKGISREGSIIDMGVDTGIVRKSGSWFTYGDDQLGQGK 326

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV---ADSLLQEPAINTKDDA 354
           EN + FL +N  +A  IE  +    G+     +   Q P+++  +DA
Sbjct: 327 ENVRQFLADNPALAGEIEQKILVALGIAEAPPEEASQAPSVDPDEDA 373


>gi|261837604|gb|ACX97370.1| recombinase [Helicobacter pylori 51]
          Length = 347

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 202/327 (61%), Positives = 264/327 (80%), Gaps = 3/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+  A+ QI +V+GKGA+++LG +    E I+ +S+GSLGLD+ALGIGG PKGRI+
Sbjct: 6   DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDSISTGSLGLDLALGIGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  +
Sbjct: 124 EQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+
Sbjct: 184 HKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIATLKQNEQHIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF++ EFDIM+GEGIS  GE+ID GVK  IVDKSGAW S++ ++LGQG
Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336
           REN+K  L+E+  +A  I   ++++ G
Sbjct: 304 RENAKALLKEDKALANEITLKIKESIG 330


>gi|307602801|gb|ADN67613.1| RecA [Neptuniibacter sp. antisso-13]
          Length = 272

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/274 (74%), Positives = 236/274 (86%), Gaps = 2/274 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKGA+M++G Q    E I  VS+GSLGLDIALGIGG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGAVMRMGDQPR--EAIPSVSTGSLGLDIALGIGGLPYGRIVEIYGPESSGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           +A++QK G TCAFVDAEHALD IYA KLGVD+ NLL+SQPDTGEQALEITDMLVRS AVD
Sbjct: 59  VAEAQKQGKTCAFVDAEHALDPIYAEKLGVDVDNLLVSQPDTGEQALEITDMLVRSNAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT ++  S C+LVFINQ+RMKI
Sbjct: 119 VIIVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTGNVKSSNCLLVFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRLDIRR G++K  D + GN+TRVKVVKNK++ PF+Q E
Sbjct: 179 GVMFGNPETTTGGNALKFYSSVRLDIRRTGAVKQGDEVVGNETRVKVVKNKVSPPFRQAE 238

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
           F IMYG+GI   GE+IDLGVK  +VDKSGAW+S+
Sbjct: 239 FQIMYGKGIYHMGEVIDLGVKEGLVDKSGAWYSY 272


>gi|256825586|ref|YP_003149546.1| RecA protein [Kytococcus sedentarius DSM 20547]
 gi|256688979|gb|ACV06781.1| RecA protein [Kytococcus sedentarius DSM 20547]
          Length = 367

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 195/330 (59%), Positives = 267/330 (80%), Gaps = 2/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +++++L+A +SQI++ +GKGA+M+LG        I  + +GS+ LD+ALG+GG P+GR++
Sbjct: 12  ERTRSLDAVMSQIEKQHGKGAVMRLGD--DTRPPIATIPTGSIALDVALGLGGLPRGRVI 69

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A +QK GG  AF+DAEHALD  YA+KLGVD+ NLL+SQPDTG
Sbjct: 70  EVYGPESSGKTTVALHAVANAQKAGGIAAFIDAEHALDPEYAKKLGVDVDNLLVSQPDTG 129

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 130 EQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGAL 189

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+T
Sbjct: 190 SNTGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRIDVRRIETLKDGTDAVGNRT 249

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R K+VKNK++ PFKQ EFDI+YG+GIS  G +ID+GV+   + KSGAW++++G +LGQG+
Sbjct: 250 RAKIVKNKVSPPFKQAEFDILYGQGISREGGIIDMGVEHGFIRKSGAWYTYEGDQLGQGK 309

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           EN++ FL++N ++ E ++  ++   G+  D
Sbjct: 310 ENARQFLKDNPDLTEELDRKIKAKLGIGVD 339


>gi|17225215|gb|AAL37303.1|AF323925_1 recombinase RecA [Helicobacter pylori]
 gi|17225217|gb|AAL37304.1|AF323926_1 recombinase RecA [Helicobacter pylori]
          Length = 347

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/327 (61%), Positives = 265/327 (81%), Gaps = 3/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+  A+ QI +V+GKGA+++LG +    E I+ +S+GSLGLD+ALGIGG PKGRI+
Sbjct: 6   DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDAISTGSLGLDLALGIGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+LH IA+ QK GG CAF+DA+HALD  YA++LGVD +NLL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAKHALDVHYAKRLGVDTENLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  +
Sbjct: 124 EQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+
Sbjct: 184 HKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF++ EFDIM+GEGIS  GE+ID GVK  IVDKSGAW S++ ++LGQG
Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336
           REN+K  L+E+  +A+ I   ++++ G
Sbjct: 304 RENAKALLKEDKALADEITLKIKESIG 330


>gi|292670968|ref|ZP_06604394.1| recombination protein A [Selenomonas noxia ATCC 43541]
 gi|292647589|gb|EFF65561.1| recombination protein A [Selenomonas noxia ATCC 43541]
          Length = 349

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/321 (63%), Positives = 257/321 (80%), Gaps = 1/321 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + +ALE AL QI++ +GKG+IM+LG   +    IEV+S+G L LDIALG+GG P+GRI+E
Sbjct: 10  REEALENALKQIEKTHGKGSIMRLGEAKANMN-IEVISTGILPLDIALGVGGIPRGRIIE 68

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTT+ LH IA++QK GG  AF+DAEHALD  YARKLGV++++LLISQPDTGE
Sbjct: 69  VYGPESSGKTTVTLHMIAEAQKAGGIAAFIDAEHALDPEYARKLGVNIEDLLISQPDTGE 128

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSGA+DIIV+DSVAAL P++EI+ DMG S  G+QARLMSQA+RKLT  IS
Sbjct: 129 QALEIVDALVRSGAIDIIVVDSVAALVPKSEIDEDMGSSHVGLQARLMSQAMRKLTGIIS 188

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +++ + VFINQ+R KIGV +G+PETTTGG ALKFY+SVR+D+RR  SIK      GN+TR
Sbjct: 189 KTRTVAVFINQLREKIGVTYGNPETTTGGRALKFYASVRIDVRRADSIKQGTESLGNRTR 248

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
            K+VKNK+A PFK  EFDIMYGEG+S  G +ID+GV   IV+KSGAW+S+ G RLGQG+E
Sbjct: 249 AKIVKNKVAPPFKTAEFDIMYGEGVSRLGSIIDMGVDLDIVEKSGAWYSYNGTRLGQGKE 308

Query: 312 NSKIFLRENIEIAENIESLLR 332
           N+KI L  N +I   IE  +R
Sbjct: 309 NAKITLEGNPDIIAEIEEKIR 329


>gi|291550041|emb|CBL26303.1| protein RecA [Ruminococcus torques L2-14]
          Length = 379

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 197/349 (56%), Positives = 273/349 (78%), Gaps = 5/349 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  +K KAL+AA++++++ +GKGA+M+LG  G+    +E V +G L LD+ALG+GG PKG
Sbjct: 12  NNEEKKKALDAAIAKLEKDFGKGAVMRLGESGAHV-AVETVPTGCLSLDLALGLGGVPKG 70

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R++E+YGPESSGKTT+ALH I++ QK GG   F+DAEHALD +YA+ +GVD+  L ISQP
Sbjct: 71  RVIEVYGPESSGKTTVALHMISEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDELYISQP 130

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D+G+QALEI + +VRSGA+DIIVIDSVAAL P+ EIEGDMG+S  G+QARLMSQALRKLT
Sbjct: 131 DSGDQALEIAETMVRSGAIDIIVIDSVAALVPKQEIEGDMGDSHVGLQARLMSQALRKLT 190

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
             IS+S CI++FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+D+RR+ ++K    + G
Sbjct: 191 PVISKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYASVRMDVRRIETLKQSGEMVG 250

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+TR+++VKNK+A PFK+ EFDIM+G+GIS  G+++DL     +V KSGAW++++G+++G
Sbjct: 251 NRTRIRIVKNKIAPPFKEAEFDIMFGKGISRAGDILDLATNIDLVKKSGAWYAYEGEKIG 310

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           QGREN+K +L  + E+ E ++  +R +  L       E A N   DA+K
Sbjct: 311 QGRENAKAYLESHPEVMETLDQKVRAHYALSG----SEEAENELPDAEK 355


>gi|217034203|ref|ZP_03439622.1| hypothetical protein HP9810_886g40 [Helicobacter pylori 98-10]
 gi|216943371|gb|EEC22830.1| hypothetical protein HP9810_886g40 [Helicobacter pylori 98-10]
 gi|261839017|gb|ACX98782.1| recombinase A [Helicobacter pylori 52]
 gi|297379378|gb|ADI34265.1| recA protein [Helicobacter pylori v225d]
 gi|308061444|gb|ADO03332.1| recombinase A [Helicobacter pylori Cuz20]
 gi|308063014|gb|ADO04901.1| recombinase A [Helicobacter pylori Sat464]
 gi|315586156|gb|ADU40537.1| recombination protein A [Helicobacter pylori 35A]
 gi|317176970|dbj|BAJ54759.1| recombinase A [Helicobacter pylori F16]
 gi|317179451|dbj|BAJ57239.1| recombinase A [Helicobacter pylori F30]
 gi|317179958|dbj|BAJ57744.1| recombinase A [Helicobacter pylori F32]
 gi|317181463|dbj|BAJ59247.1| recombinase A [Helicobacter pylori F57]
          Length = 347

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 202/327 (61%), Positives = 264/327 (80%), Gaps = 3/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+  A+ QI +V+GKGA+++LG +    E I+ +S+GSLGLD+ALGIGG PKGRI+
Sbjct: 6   DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDSISTGSLGLDLALGIGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  +
Sbjct: 124 EQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+
Sbjct: 184 HKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF++ EFDIM+GEGIS  GE+ID GVK  IVDKSGAW S++ ++LGQG
Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336
           REN+K  L+E+  +A  I   ++++ G
Sbjct: 304 RENAKALLKEDKALANEITLKIKESIG 330


>gi|325473329|gb|EGC76524.1| recA [Treponema denticola F0402]
          Length = 414

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/327 (62%), Positives = 268/327 (81%), Gaps = 2/327 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  DK KALEAA  QI++ +G+G++M+LG+  +I   IE++ SGS+ LD ALGIGG+P+G
Sbjct: 13  NPDDKLKALEAARLQIEKQFGQGSLMKLGNNSAIG-NIEIIPSGSILLDEALGIGGYPRG 71

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EI+GPESSGKTT+ALH +A++QK GG  AF+DAEHALD  YA+ LGV++  L +SQP
Sbjct: 72  RIIEIFGPESSGKTTIALHAVAEAQKQGGIAAFIDAEHALDPQYAKALGVNIDELWVSQP 131

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI + LVRSGAVDIIVIDSVAALTP+AEI G+MG+S  G+QARLMSQALRKLT
Sbjct: 132 DTGEQALEIAESLVRSGAVDIIVIDSVAALTPQAEIAGEMGDSHMGLQARLMSQALRKLT 191

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI-KDKDSIT 246
           + I +S C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLD+R++ ++ KD D   
Sbjct: 192 AIIGKSNCMIIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDVRKIETLGKDDDEAW 251

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ RVKVVKNK+A PF++VE +I++G+G+  +G L+D  VK  I+ KSG+W+S+   ++
Sbjct: 252 GNKIRVKVVKNKVAPPFRKVEMEILFGKGVCPYGSLLDSAVKQEIIGKSGSWYSYGDDKI 311

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333
           GQGR N+  FL ENI+IA+ IE  LR+
Sbjct: 312 GQGRPNAVKFLEENIDIAQKIEKELRE 338


>gi|47678136|emb|CAF21831.1| RecA recombinase [Enterococcus durans]
          Length = 346

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 200/327 (61%), Positives = 263/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  ALEAAL +I++ YGKG+IM+LG +  I + I  + SGSL LD+ALG+GG+P+GRIV
Sbjct: 4   DRKAALEAALKKIEKNYGKGSIMKLGEK--IDQQISTIPSGSLALDVALGVGGYPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ Q+ GGT AF+DAEHALD  YA+KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQRNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+V+DSVAAL PRAEI+G+MG+S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E D+MYG+GIS  GEL+D+ V+  IVDKSGAW+S+K  R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKIAEVDVMYGQGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+KI++  + E+   + +L+R   G+
Sbjct: 302 ENAKIYMANHPEMMAEVSALVRAAYGI 328


>gi|31540541|gb|AAP49233.1| RecA [Mycobacterium aurum]
          Length = 317

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 202/312 (64%), Positives = 256/312 (82%), Gaps = 2/312 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE AL+QI + +GKG++M+LG +  +   I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 7   DREKALELALAQIDKNFGKGSVMRLGDEVRV--PISVIPTGSIALDVALGIGGLPRGRVI 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD   LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAQKLGVDTDALLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD     GN+T
Sbjct: 185 SNSNTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF++ G++LGQG+
Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVEQGFIRKSGSWFTYDGEQLGQGK 304

Query: 311 ENSKIFLRENIE 322
           EN++ F+ EN E
Sbjct: 305 ENARNFMIENPE 316


>gi|293376433|ref|ZP_06622665.1| protein RecA [Turicibacter sanguinis PC909]
 gi|325845048|ref|ZP_08168364.1| RecA protein [Turicibacter sp. HGF1]
 gi|292644942|gb|EFF63020.1| protein RecA [Turicibacter sanguinis PC909]
 gi|325488924|gb|EGC91317.1| RecA protein [Turicibacter sp. HGF1]
          Length = 345

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 202/332 (60%), Positives = 262/332 (78%), Gaps = 2/332 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++  AL  AL  I++ YGKG++M+LG +      IEVVSSGSL LD ALG+GG+P+GR++
Sbjct: 4   NREAALMQALKSIEKQYGKGSVMKLGEKTDTR--IEVVSSGSLALDSALGVGGYPRGRVI 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT ALH IA+ QK GGT AF+DAEHALD  YA KLGVD   LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTFALHAIAEVQKKGGTAAFIDAEHALDPAYAEKLGVDTDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL+ +I
Sbjct: 122 EQALEIAEALVRSGAIDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + +K I +FINQ+R K+G+MFG+PE T GG ALKFYS++RL++RR   IK    I GN  
Sbjct: 182 NTTKTIAIFINQIREKVGIMFGNPEVTPGGRALKFYSTIRLEVRRGEQIKLGTDIVGNVA 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK VE D+MYGEG+S  GE++DL V+ +I++KSG+W+S+ G++LGQGR
Sbjct: 242 KIKVVKNKVAPPFKTVEVDVMYGEGVSKQGEILDLAVEYNIIEKSGSWYSYNGEKLGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL 342
           EN+K+FL+EN  + E +  L+R    +  D++
Sbjct: 302 ENAKLFLKENPFVMEEVAELIRAELNIATDTV 333


>gi|229000603|ref|ZP_04160143.1| hypothetical protein bmyco0003_51360 [Bacillus mycoides Rock3-17]
 gi|229006025|ref|ZP_04163714.1| hypothetical protein bmyco0002_29460 [Bacillus mycoides Rock1-4]
 gi|228755224|gb|EEM04580.1| hypothetical protein bmyco0002_29460 [Bacillus mycoides Rock1-4]
 gi|228759158|gb|EEM08164.1| hypothetical protein bmyco0003_51360 [Bacillus mycoides Rock3-17]
          Length = 341

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/339 (60%), Positives = 270/339 (79%), Gaps = 3/339 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG Q      I  + SGSL LD+ALG+GG+P+GR++
Sbjct: 3   DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RRISTIPSGSLALDVALGVGGYPRGRVI 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPDTG
Sbjct: 61  EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI + LVRSGA+DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQGLEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   +K  + I GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYGEGIS  GE++D+  +  IV KSGAW+S+  +RLGQGR
Sbjct: 241 KIKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS-LLQEPAI 348
           EN+K FL+EN E+ + I   +R++ G+  D+  L+E AI
Sbjct: 301 ENAKQFLKENPELRDEIAFFIREHHGIGEDAGNLEEGAI 339


>gi|154483622|ref|ZP_02026070.1| hypothetical protein EUBVEN_01326 [Eubacterium ventriosum ATCC
           27560]
 gi|149735532|gb|EDM51418.1| hypothetical protein EUBVEN_01326 [Eubacterium ventriosum ATCC
           27560]
          Length = 383

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 200/327 (61%), Positives = 261/327 (79%), Gaps = 1/327 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           EMN  DK KAL+AA++QI+R +GKG+IM+LG  G     +E + +GSL LD+ALG+GG P
Sbjct: 38  EMNKEDKLKALDAAIAQIERQHGKGSIMKLGDSGKSMN-VETIPTGSLSLDLALGMGGIP 96

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR+VEIYGPESSGKTT+ALH IA+ QK GG   F+DAEHALD +YA+ +GVD+ NL IS
Sbjct: 97  KGRVVEIYGPESSGKTTVALHMIAEVQKRGGVAGFIDAEHALDPVYAKAIGVDIDNLYIS 156

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEIT+ +VRSGAVDIIV+DSVAAL P+AEI+G+MGES  G  ARLMSQALRK
Sbjct: 157 QPDYGEQALEITETMVRSGAVDIIVVDSVAALVPKAEIDGEMGESHMGQHARLMSQALRK 216

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT  ++++ C ++FINQ+R KIGVMFG+PETTTGG ALKFY+SVR+D+RRV ++K    +
Sbjct: 217 LTGIMNKTGCTVIFINQLREKIGVMFGNPETTTGGRALKFYASVRMDVRRVETLKTGGEM 276

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+ RVKVVKNK+A PFK+ EFDIM+G+GIS  G+++DL     +V KSG+W+++  ++
Sbjct: 277 VGNRARVKVVKNKIAPPFKEAEFDIMFGKGISREGDILDLAANCGVVIKSGSWYAYNNEK 336

Query: 306 LGQGRENSKIFLRENIEIAENIESLLR 332
           +GQGREN+K +  EN  + E +E  +R
Sbjct: 337 IGQGRENAKKYFMENPAVMEEVEQKVR 363


>gi|225936983|emb|CAJ82776.2| recA recombinase [Enterococcus phoeniculicola]
          Length = 347

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 206/335 (61%), Positives = 267/335 (79%), Gaps = 2/335 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ YGKG+IM+LG +  I + I V+ SGSL LD+ALG+GG+P+GRIV
Sbjct: 4   DRKAALDAALKRIEKNYGKGSIMKLGEK--IDQQISVIPSGSLALDVALGVGGYPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+VIDSVAAL PRAEI+G+MG+S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVIDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEVTPGGRALKFYATIRLEVRRAEQLKQGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E D+MYG GIS  GEL+D+ V+  IVDKSGAW+S+K +R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEVDMMYGLGISQEGELLDMAVEKDIVDKSGAWYSYKEERIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           EN KI++ E+ E+   I + +R+  G+   S L E
Sbjct: 302 ENVKIYMSEHPEMMAEISARVREAYGIGDGSTLVE 336


>gi|312888365|ref|ZP_07747941.1| recA protein [Mucilaginibacter paludis DSM 18603]
 gi|311299199|gb|EFQ76292.1| recA protein [Mucilaginibacter paludis DSM 18603]
          Length = 335

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/326 (64%), Positives = 267/326 (81%), Gaps = 2/326 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+ V+K KAL+  L ++++ YGKG IM+LG   +  E IEV+S+GSLGLDIALG+GG PK
Sbjct: 1   MSSVEKLKALQLTLDKLEKSYGKGTIMKLGD--TAIEPIEVISTGSLGLDIALGVGGLPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++EIYGPESSGKTTL++H IA+ QK GG  AF+DAEHA D  YA++LGVD++NLLISQ
Sbjct: 59  GRVIEIYGPESSGKTTLSIHAIAECQKAGGIAAFIDAEHAFDKYYAKRLGVDVENLLISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI D L+RSGA+DIIVIDSVAAL P++EIEG+MG+S  G+QARLMSQALRKL
Sbjct: 119 PDNGEQALEIADNLIRSGAIDIIVIDSVAALVPKSEIEGEMGDSKMGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T +IS++ C  +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRRV  IKD D ++
Sbjct: 179 TGTISKTGCCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRVSQIKDTDEVS 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ +VK+VKNK+A PF+  EFDIM+GEGIS  GE+IDLGV+  I+ K+G+WFS+   RL
Sbjct: 239 GNRVKVKIVKNKVAPPFRIAEFDIMFGEGISKAGEIIDLGVEYEIIKKAGSWFSYGDTRL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332
           GQGR+  K  + +N E+ E +E  +R
Sbjct: 299 GQGRDAVKQLILDNPELMEELEEKIR 324


>gi|188526958|ref|YP_001909645.1| recombinase A [Helicobacter pylori Shi470]
 gi|238691885|sp|B2URY3|RECA_HELPS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|188143198|gb|ACD47615.1| recombinase A [Helicobacter pylori Shi470]
          Length = 347

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/327 (61%), Positives = 264/327 (80%), Gaps = 3/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+  A+ QI +++GKGA+++LG +    E I+ +S+GSLGLD+ALGIGG PKGRI+
Sbjct: 6   DKQKAISLAIKQIDKIFGKGALVRLGDKQ--VEKIDSISTGSLGLDLALGIGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  +
Sbjct: 124 EQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+
Sbjct: 184 HKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF++ EFDIM+GEGIS  GE+ID GVK  IVDKSGAW S++ ++LGQG
Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336
           REN+K  L+E+  +A  I   ++++ G
Sbjct: 304 RENAKALLKEDKALANEITLKIKESIG 330


>gi|78357416|ref|YP_388865.1| recombinase A [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|123754866|sp|Q30YS6|RECA_DESDG RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|78219821|gb|ABB39170.1| RecA protein [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 351

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/348 (58%), Positives = 271/348 (77%), Gaps = 10/348 (2%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + +AL  ALS I+R YG G++M+L         + V+ SGS+GLD+ALG+GG P+GR+ E
Sbjct: 13  RREALNTALSTIERKYGSGSVMKLSDDAHT--NVAVIPSGSIGLDLALGVGGIPRGRVTE 70

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH IA+ QK GGT AF+DAEHALD  YAR+LGV    +LISQPD GE
Sbjct: 71  IYGPESSGKTTLALHMIAECQKQGGTAAFIDAEHALDINYARRLGVKTDEMLISQPDYGE 130

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL+I DMLVRS AVD++VIDSVAAL P++E+EG+MGE+  G QARLMS A+RKLT +I 
Sbjct: 131 QALDIADMLVRSNAVDVVVIDSVAALIPQSELEGNMGETQVGSQARLMSHAMRKLTGTIH 190

Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +S+  ++FINQ+RMKIG M +GSPETTTGGNALKFY SVR+D+R++ ++KDK+ + GN+ 
Sbjct: 191 KSRTSVIFINQIRMKIGTMGYGSPETTTGGNALKFYCSVRIDVRKIQTLKDKEEVYGNRV 250

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PF++ +FDI+YG+G+S  GELIDLGV+  IV+KSGAW++F  +RLGQG+
Sbjct: 251 RVKIVKNKVAPPFREAQFDILYGQGVSRTGELIDLGVETGIVEKSGAWYAFGSERLGQGK 310

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           EN +  L+EN  + E IE  L ++ G      ++EP + + D+A+K D
Sbjct: 311 ENVRQMLQENTTLREAIEQKLLEHLG------MREP-VQSADEAEKQD 351


>gi|261368036|ref|ZP_05980919.1| protein RecA [Subdoligranulum variabile DSM 15176]
 gi|282570024|gb|EFB75559.1| protein RecA [Subdoligranulum variabile DSM 15176]
          Length = 392

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 198/326 (60%), Positives = 265/326 (81%), Gaps = 3/326 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK  ALE AL+QI++ +GKGA+M+LG+  ++   ++ + +GSLGLD+ALGIGG P+GRI+
Sbjct: 17  DKKAALETALAQIEKQFGKGAVMKLGA--NVTMQVDAIPTGSLGLDLALGIGGLPRGRII 74

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLAL  +A++QK GG  AF+D EHALD  YA  LGVD+ +LL+SQPDTG
Sbjct: 75  EIYGPESSGKTTLALQVLAEAQKMGGEVAFIDVEHALDPAYASALGVDIDSLLVSQPDTG 134

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQA+EI + LVRSGA+D +V+DSVAA+ PRAEIEG+MG+S  G+QARLMSQALRKLT  I
Sbjct: 135 EQAMEICEALVRSGAIDAVVVDSVAAMVPRAEIEGEMGDSHVGLQARLMSQALRKLTGVI 194

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQ 249
            ++  + +FINQ+R K+G+++G+PE TTGG ALK+YSSVR+D+RR+  +KD   +  GN+
Sbjct: 195 GKTNTVCIFINQLREKVGIVYGNPEVTTGGRALKYYSSVRIDVRRIEGLKDSTGAFIGNR 254

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TR K+VKNK+A PF++ EFDIM+GEGIS  GE++DLGVK  IV KSGAWF++   RLGQG
Sbjct: 255 TRAKIVKNKVAPPFREAEFDIMFGEGISKIGEILDLGVKLGIVQKSGAWFNYGEMRLGQG 314

Query: 310 RENSKIFLRENIEIAENIESLLRQNA 335
           R+N+K FL+E+ E+++ IE ++R NA
Sbjct: 315 RDNAKQFLKEHPEVSDEIEKIVRANA 340


>gi|269925195|ref|YP_003321818.1| recA protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269788855|gb|ACZ40996.1| recA protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 344

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/327 (62%), Positives = 264/327 (80%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE+A++QI+R +G G+IM++    +  + IE + +GS+ LDIALG+GG P+GRIV
Sbjct: 3   DRDKALESAIAQIERAFGTGSIMRMTGDRAKMQ-IEAIPTGSIALDIALGVGGVPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLA H IA++QK GGT A++DAEHA D  YA K GV L +LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLAQHIIAEAQKLGGTAAYIDAEHAFDPSYAEKCGVQLSDLLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL  ++
Sbjct: 122 EQALEIAETLVRSGAVDVVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGAV 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK +L+FINQ+RMKIGVMFG+PETT+GGNALKFY+SVRL+IR+V SIK    + GN+ 
Sbjct: 182 NKSKTVLIFINQIRMKIGVMFGNPETTSGGNALKFYASVRLEIRKVESIKQGQDVVGNRV 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV+KNK+ASP++  EFDIM+ EGIS  G LID+G+   ++ KSG++     +RLGQGR
Sbjct: 242 RVKVIKNKVASPYRTAEFDIMFNEGISKEGNLIDVGLSVGVLRKSGSFIYLDDERLGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K +LR+N ++AE IES ++    L
Sbjct: 302 ENAKEYLRQNPDVAEEIESRIKAAGNL 328


>gi|210615819|ref|ZP_03290800.1| hypothetical protein CLONEX_03018 [Clostridium nexile DSM 1787]
 gi|210150155|gb|EEA81164.1| hypothetical protein CLONEX_03018 [Clostridium nexile DSM 1787]
          Length = 347

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 195/327 (59%), Positives = 265/327 (81%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+AA+ ++++ +GKG +M+LG  G+    +E V +GSL LDIALG+GG PKGR++
Sbjct: 12  DKQKALDAAILKLEKDFGKGTVMKLGDAGANVS-VETVPTGSLSLDIALGLGGVPKGRVI 70

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ LH IA+ QK GG   F+DAEHALD +YA+ +GV++  L ISQPD+G
Sbjct: 71  EVYGPESSGKTTVTLHMIAEVQKRGGIAGFIDAEHALDPVYAKNIGVNIDELYISQPDSG 130

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           +QALEI + +VRSGA+DIIVIDSVAAL P+ EIEGDMG+S  G+QARLMSQALRKLT  I
Sbjct: 131 DQALEIAETMVRSGAMDIIVIDSVAALVPKQEIEGDMGDSHVGLQARLMSQALRKLTPVI 190

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S C+++FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+D+RR+ ++K    + GN+T
Sbjct: 191 SKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASVRMDVRRIETLKQNGEMVGNRT 250

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+K+VKNK+A PFK+ EFDIM+G+GIS  G+++DL  K  +V+KSGAW+++ G ++GQGR
Sbjct: 251 RIKIVKNKIAPPFKEAEFDIMFGKGISKEGDILDLATKLDLVNKSGAWYAYNGDKIGQGR 310

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+KI+L ++ EI E +E  +R +  L
Sbjct: 311 ENAKIYLGQHPEIMEELEEKIRAHYHL 337


>gi|307566245|ref|ZP_07628691.1| protein RecA [Prevotella amnii CRIS 21A-A]
 gi|307345049|gb|EFN90440.1| protein RecA [Prevotella amnii CRIS 21A-A]
          Length = 341

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 199/322 (61%), Positives = 265/322 (82%), Gaps = 2/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+AA+++I++ +GKGAIM++G +  I E I+V+ +GSLGLD+ALG+GGFP+GRIVE
Sbjct: 16  KLKALQAAMAKIEKDFGKGAIMKMGDR--ITEKIDVIPTGSLGLDVALGVGGFPRGRIVE 73

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPESSGKTTLALH IA++QK GG  AF+DAEHA D  YA  LGVD+ NL ISQPD GE
Sbjct: 74  IFGPESSGKTTLALHAIAEAQKQGGVAAFIDAEHAFDPTYAAALGVDIDNLWISQPDNGE 133

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL+I D L+ S AVD++V+DSVAALTP+ EIEG+MG+S+ G+ ARLMSQALRKLTS+IS
Sbjct: 134 QALQIADQLISSSAVDLLVVDSVAALTPKKEIEGEMGDSVVGLHARLMSQALRKLTSTIS 193

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIG+ FG+PETTTGGNALKFY+SVR+D+R+   IKD D++ GN T+
Sbjct: 194 KTNTCCIFINQLREKIGMTFGNPETTTGGNALKFYASVRVDVRKSTQIKDGDNVLGNLTK 253

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNK+A PF++ EFDI++GEGIS  GE+IDLGV+  I+ KSG+WFS+   +L QGR+
Sbjct: 254 VKIVKNKVAPPFRKCEFDIIFGEGISKLGEIIDLGVEYDIIKKSGSWFSYGDTKLAQGRD 313

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
             K  L++N E++E +E L+++
Sbjct: 314 GVKNMLKDNPELSEELERLIKE 335


>gi|262195048|ref|YP_003266257.1| recA protein [Haliangium ochraceum DSM 14365]
 gi|262078395|gb|ACY14364.1| recA protein [Haliangium ochraceum DSM 14365]
          Length = 375

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/321 (62%), Positives = 255/321 (79%), Gaps = 2/321 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSK LE AL  I++ +G GAIM+LG Q      + V+ +GSL LDIALG+GGFP+GRIV
Sbjct: 12  NKSKILEDALRVIKKQFGNGAIMRLGGQD--VTQVAVIPTGSLALDIALGVGGFPRGRIV 69

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL LH IA++Q  GG CAF+DAEHALD+ YA++LGV L +LL+SQPD G
Sbjct: 70  EVYGPESSGKTTLTLHAIAEAQARGGVCAFIDAEHALDTSYAQRLGVQLDDLLVSQPDCG 129

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVR+GA+D+IV+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRKLT+ +
Sbjct: 130 EQALEIADTLVRTGAIDLIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKLTAGV 189

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +R+   +VFINQ+R+KIG +FG+PETTTGGNALKFY+SVRLDIR+   IK  D + G   
Sbjct: 190 ARTNTTVVFINQLRLKIGTVFGNPETTTGGNALKFYASVRLDIRKGKPIKHNDEVVGAGV 249

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PF++  F+I+YG G++   EL+D G +  +V+KSGAW+S++GQRLGQGR
Sbjct: 250 RVKVVKNKMAPPFREAHFEILYGSGVNKLAELVDTGERMGLVNKSGAWYSYEGQRLGQGR 309

Query: 311 ENSKIFLRENIEIAENIESLL 331
           E +   L  N E+AE +   L
Sbjct: 310 ERAAEHLAANAELAERLRGTL 330


>gi|42526384|ref|NP_971482.1| recombinase A [Treponema denticola ATCC 35405]
 gi|60392998|sp|P62221|RECA_TREDE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|41816496|gb|AAS11363.1| recA protein [Treponema denticola ATCC 35405]
          Length = 414

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/327 (62%), Positives = 268/327 (81%), Gaps = 2/327 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  DK KALEAA  QI++ +G+G++M+LG+  +I   IE++ SGS+ LD ALGIGG+P+G
Sbjct: 13  NPDDKLKALEAARLQIEKQFGQGSLMKLGNNSAIG-NIEIIPSGSILLDEALGIGGYPRG 71

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EI+GPESSGKTT+ALH +A++QK GG  AF+DAEHALD  YA+ LGV++  L +SQP
Sbjct: 72  RIIEIFGPESSGKTTIALHAVAEAQKQGGIAAFIDAEHALDPQYAKALGVNIDELWVSQP 131

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI + LVRSGAVD+IVIDSVAALTP+AEI G+MG+S  G+QARLMSQALRKLT
Sbjct: 132 DTGEQALEIAESLVRSGAVDVIVIDSVAALTPQAEIAGEMGDSHMGLQARLMSQALRKLT 191

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI-KDKDSIT 246
           + I +S C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLD+R++ ++ KD D   
Sbjct: 192 AIIGKSNCMIIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDVRKIETLGKDDDEAW 251

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ RVKVVKNK+A PF++VE +I++G+G+  +G L+D  VK  I+ KSG+W+S+   ++
Sbjct: 252 GNKIRVKVVKNKVAPPFRKVEMEILFGKGVCPYGSLLDSAVKQEIIGKSGSWYSYGDDKI 311

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333
           GQGR N+  FL ENI+IA+ IE  LR+
Sbjct: 312 GQGRPNAVKFLEENIDIAQKIEKELRE 338


>gi|312128903|ref|YP_003996243.1| reca protein [Leadbetterella byssophila DSM 17132]
 gi|311905449|gb|ADQ15890.1| recA protein [Leadbetterella byssophila DSM 17132]
          Length = 346

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 203/336 (60%), Positives = 267/336 (79%), Gaps = 3/336 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK K L++ L ++ + +GKG +M+L S   + + + V+S+GSLGLD+ALG+ G PKGR++
Sbjct: 7   DKLKILQSTLDKLDKSFGKGTVMRL-SDTKVLD-VPVISTGSLGLDLALGVNGLPKGRVI 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D +YA KLG+D KNLLISQPD G
Sbjct: 65  EIYGPESSGKTTLAMHAIAEAQKQGGIAAFIDAEHAFDRVYAEKLGIDTKNLLISQPDYG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L+ SGA+DI VIDSVAAL P+AE++G+MG+S  G+QARLMSQALRKLT +I
Sbjct: 125 EQALEIAEHLIASGAIDICVIDSVAALVPKAELDGEMGDSKMGLQARLMSQALRKLTGTI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQ 249
           +++ C  +FINQ+R KIGVMFGSPETTTGGNALKFY+S+R+DIRR+G IKD + +I GN+
Sbjct: 185 NKTGCTCIFINQLRDKIGVMFGSPETTTGGNALKFYASIRIDIRRIGQIKDNEGNIIGNR 244

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFK +EFDIMYGEG+S  GE++DL V   I+ KSG+WFS+   RLGQG
Sbjct: 245 TRVKVVKNKVAPPFKVIEFDIMYGEGVSKSGEVLDLAVDLDIIKKSGSWFSYGADRLGQG 304

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           R+  K  +++N E+  +IE  ++      AD+L+ +
Sbjct: 305 RDAVKALIKDNPELMADIEEKIKATVAGNADALMDK 340


>gi|68536193|ref|YP_250898.1| recombinase A [Corynebacterium jeikeium K411]
 gi|76363324|sp|Q4JV77|RECA_CORJK RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|68263792|emb|CAI37280.1| recombinase A [Corynebacterium jeikeium K411]
          Length = 375

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/318 (63%), Positives = 261/318 (82%), Gaps = 2/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+SKALE A++QI++ +GKGAIM+LG        I+ +SSG++ ++ ALGIGGFP+GR+V
Sbjct: 14  DRSKALELAMAQIEKDFGKGAIMRLGD--DTRPPIQAISSGNIAINAALGIGGFPRGRVV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA++Q+ GG  AFVDAEHALD  YAR LGVD   LL+SQPDTG
Sbjct: 72  EIYGPESSGKTTVALHAIAEAQRAGGIAAFVDAEHALDPEYARALGVDTDALLVSQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DIIV+DSVAALTP+AEI+GDMG+S  G+QARLMSQALRK+T ++
Sbjct: 132 EQALEIADMLIRSGAIDIIVVDSVAALTPKAEIDGDMGDSHVGLQARLMSQALRKMTGAL 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR DIRR+ ++KD   + GN+T
Sbjct: 192 YQTGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRIQALKDGQDVVGNRT 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK++ PFK  EFDI+YGEGIS  G +IDLGV+  ++ KSG+WF++ G +LGQG+
Sbjct: 252 RLKVVKNKVSPPFKIAEFDILYGEGISREGSIIDLGVETGLIKKSGSWFTYDGDQLGQGK 311

Query: 311 ENSKIFLRENIEIAENIE 328
           E ++ FL+ N +++  +E
Sbjct: 312 EKAREFLKNNRDLSAELE 329


>gi|47678152|emb|CAF21839.1| RecA recombinase [Enterococcus ratti]
          Length = 346

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 198/327 (60%), Positives = 264/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ YGKG+IM+LG +  I + +  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKAALDAALKKIEKNYGKGSIMKLGEK--IDQQVSTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGA+DI+V+DSVAAL PRAEI+G+MG+S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAIDIVVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEVTPGGRALKFYATIRLEVRRAEQLKQGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E D+MYG+GIS  GEL+D+ V+  IVDKSGAW+S+K +R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKIAEVDVMYGQGISQEGELLDMAVEKDIVDKSGAWYSYKEERIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+KI++  + E+   I +L+R   G+
Sbjct: 302 ENAKIYMANHPEMMAEISTLVRAAYGI 328


>gi|215254339|gb|ACJ64162.1| recombinase A [Vibrio cholerae]
          Length = 331

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 197/311 (63%), Positives = 259/311 (83%), Gaps = 2/311 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTT
Sbjct: 1   IEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L R
Sbjct: 59  LTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALAR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 119 SGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 178

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+P
Sbjct: 179 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAP 238

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+ N+  +L+EN +
Sbjct: 239 FKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKENPK 298

Query: 323 IAENIESLLRQ 333
           IA+ ++  LR+
Sbjct: 299 IAKTLDKKLRE 309


>gi|94263079|ref|ZP_01286898.1| RecA bacterial DNA recombination protein [delta proteobacterium
           MLMS-1]
 gi|94266364|ref|ZP_01290064.1| RecA bacterial DNA recombination protein [delta proteobacterium
           MLMS-1]
 gi|93453047|gb|EAT03532.1| RecA bacterial DNA recombination protein [delta proteobacterium
           MLMS-1]
 gi|93456622|gb|EAT06730.1| RecA bacterial DNA recombination protein [delta proteobacterium
           MLMS-1]
          Length = 360

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/327 (62%), Positives = 265/327 (81%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK K L++A++QIQ+ +GKGAIM+LG+   +   +  +S+G L LDIA GIGG P GRI 
Sbjct: 7   DKGKTLDSAINQIQKQFGKGAIMRLGADERV--AVPAISTGILSLDIACGIGGIPCGRIT 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLAL  IA SQ+ GG+ AF+DAEHALD  YA +LGV+   LL+SQPD G
Sbjct: 65  EIYGPESSGKTTLALQIIASSQQRGGSVAFIDAEHALDVTYAERLGVNADELLVSQPDYG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI ++L+RS AVD+IV+DSVAALTP+AEI+G++G+S  G+QARLMSQA+RKL S +
Sbjct: 125 EQALEIAEVLIRSAAVDVIVVDSVAALTPKAEIDGNIGDSHVGLQARLMSQAMRKLASLL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+   ++FINQ+RMKIGVMFG+PETTTGGNALKFYSS+R+DIRR+ +IKD D + GN+ 
Sbjct: 185 QRTNTAIIFINQLRMKIGVMFGNPETTTGGNALKFYSSMRIDIRRISTIKDGDEMIGNRV 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           + K+VKNK+A PFK  EFDI++GEG S  G+L+DL V  +IVDKSGAW+S+ G+R+GQGR
Sbjct: 245 KAKLVKNKVAPPFKIAEFDIIFGEGSSREGDLLDLAVGQNIVDKSGAWYSYNGERIGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           ENSK +L+E+ E+A+ IE+ +R   GL
Sbjct: 305 ENSKTYLKEHPEMADEIETKVRLGFGL 331


>gi|166031717|ref|ZP_02234546.1| hypothetical protein DORFOR_01417 [Dorea formicigenerans ATCC
           27755]
 gi|166028170|gb|EDR46927.1| hypothetical protein DORFOR_01417 [Dorea formicigenerans ATCC
           27755]
          Length = 363

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 196/327 (59%), Positives = 265/327 (81%), Gaps = 1/327 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  DK KAL+AA++++++ +GKG +M+LG   +    +E + +GSL LDIALG+GG P+G
Sbjct: 3   NNEDKKKALDAAIAKLEKDFGKGTVMKLGDPAAQVS-VETIPTGSLSLDIALGLGGVPRG 61

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R+VEIYGPESSGKTT+ALH I++ QK GG   F+DAEHALD +YAR +GVD+  L ISQP
Sbjct: 62  RVVEIYGPESSGKTTVALHMISEVQKRGGIAGFIDAEHALDPVYARNIGVDIDELYISQP 121

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D+G+QALEI + + RSGA+DIIVIDSVAAL P+ EIEGDMG+S  G+QARLMSQALRKLT
Sbjct: 122 DSGDQALEIAETMARSGAMDIIVIDSVAALVPKQEIEGDMGDSHVGLQARLMSQALRKLT 181

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
             IS+S C+++FINQ+R K+G+MFG+PETTTGG ALKFY+SVR+D+RR+ ++K    + G
Sbjct: 182 PVISKSNCVVIFINQLREKVGIMFGNPETTTGGRALKFYASVRMDVRRIETLKQGGEMIG 241

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+TRVK+VKNK+A PFK+ EFDIM+G+GIS  G+++DL V   +V+KSGAWFS  G ++G
Sbjct: 242 NRTRVKIVKNKIAPPFKEAEFDIMFGKGISKEGDILDLAVNLGLVNKSGAWFSCNGDKIG 301

Query: 308 QGRENSKIFLRENIEIAENIESLLRQN 334
           QGREN+KI+L E+ E+ E+++  +R +
Sbjct: 302 QGRENAKIYLTEHPELMESLDKQIRAH 328


>gi|145570087|gb|ABP79193.1| RecA protein [Pseudomonas stutzeri A1501]
          Length = 323

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 198/290 (68%), Positives = 246/290 (84%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + I  +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L  IA++QK G TCAFVD
Sbjct: 9   QAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAEAQKMGATCAFVD 68

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DSVAAL P+AE
Sbjct: 69  AEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAE 128

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           IEG+MG++  G+QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFGSPETTTGGNA
Sbjct: 129 IEGEMGDAHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNA 188

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+YG+GI   GE+
Sbjct: 189 LKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQILYGKGIYRNGEI 248

Query: 283 IDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           IDLGV+  +V+KSGAW+++KG ++GQG+ N+  FL +N EI   IE  +R
Sbjct: 249 IDLGVQQGLVEKSGAWYAYKGNKIGQGKANAAKFLEDNPEIGREIEQQIR 298


>gi|257812089|gb|ACV69912.1| RecA [Pseudomonas aeruginosa]
          Length = 321

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 199/308 (64%), Positives = 255/308 (82%), Gaps = 2/308 (0%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           R +GKG++M +G      + I  +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL 
Sbjct: 1   RQFGKGSVMLMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLT 58

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS 
Sbjct: 59  LSVIAEAQKQGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSN 118

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           AVD+I++DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T +I  + C+++FINQ+R
Sbjct: 119 AVDVIIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNIKNANCLVIFINQIR 178

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK++ PF+
Sbjct: 179 MKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVSPPFR 238

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           Q EF I+YG+GI   GE+IDLGV+  +V+KSGAW+S++G ++G G+ N+  +L +N EI 
Sbjct: 239 QAEFQILYGKGIYRTGEIIDLGVQLGLVEKSGAWYSYQGSKIGPGKANAAKYLEDNPEIG 298

Query: 325 ENIESLLR 332
             +E  +R
Sbjct: 299 SVLEKTIR 306


>gi|210134353|ref|YP_002300792.1| recombinase A [Helicobacter pylori P12]
 gi|226723630|sp|B6JPQ1|RECA_HELP2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|210132321|gb|ACJ07312.1| recombinase RecA [Helicobacter pylori P12]
          Length = 347

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/327 (61%), Positives = 264/327 (80%), Gaps = 3/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+  A+ QI +V+GKGA+++LG +    E I+ +S+GSLGLD+ALGIGG PKGRI+
Sbjct: 6   DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDAISTGSLGLDLALGIGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQP TG
Sbjct: 64  EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  +
Sbjct: 124 EEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ S+K  +   GN+
Sbjct: 184 HKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIASLKQNEQHIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF++ EFDIM+GEGIS  GE+ID GVK  IVDKSGAW S++ ++LGQG
Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336
           REN+K  L+E+  +A+ I   ++++ G
Sbjct: 304 RENAKALLKEDKALADEITLKIKESIG 330


>gi|317506454|ref|ZP_07964255.1| recA bacterial DNA recombination protein [Segniliparus rugosus ATCC
           BAA-974]
 gi|316255215|gb|EFV14484.1| recA bacterial DNA recombination protein [Segniliparus rugosus ATCC
           BAA-974]
          Length = 346

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 202/322 (62%), Positives = 261/322 (81%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D++KALE A++QI + +GKG++M+LG +    E I V+ +GS+ LD+ALGIGG PKGR++
Sbjct: 6   DRNKALELAMAQIDKSFGKGSVMRLGEKA--VEPIAVIPTGSIALDVALGIGGLPKGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGV+ +NLL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVNTENLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGALDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFG  ETTTGG ALKFY+SVRLD+RR+ ++KD      N+T
Sbjct: 184 NNSGTTAIFINQLREKIGVMFGPSETTTGGKALKFYASVRLDVRRIETLKDGTEAVANRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFKQ EFDI+YG GIS  G +IDLGV+  ++ KSGAW+++  ++LGQG+
Sbjct: 244 RVKIVKNKVAPPFKQAEFDIIYGAGISREGSIIDLGVEHGLIRKSGAWYTYGDEQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           EN++ FL  N + A+ IE LLR
Sbjct: 304 ENARKFLIANPDKADEIEMLLR 325


>gi|47571262|gb|AAT35788.1| RecA [Mycobacterium sp. ATCC 35788]
          Length = 307

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 197/307 (64%), Positives = 257/307 (83%), Gaps = 2/307 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 3   DREKALELAMAQIEKSYGKGSVMRLGDE--MRQPISVIPTGSIALDVALGIGGLPRGRVV 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 61  EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 121 EQALEIADMLIRSGALDILVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+T
Sbjct: 181 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNRT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG GIS  G LID+GV+   + KSG+WF+++G++LGQG+
Sbjct: 241 RVKVVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGK 300

Query: 311 ENSKIFL 317
           EN++ FL
Sbjct: 301 ENARTFL 307


>gi|225936948|emb|CAJ82771.1| recA recombinase [Enterococcus dispar]
          Length = 345

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/337 (59%), Positives = 268/337 (79%), Gaps = 2/337 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ YGKGA+M+LG +    + I  + SGSL LD+ALG+GG+P+GRIV
Sbjct: 4   DRKSALDAALKKIEKNYGKGAVMKLGEKAD--QQISTIPSGSLALDVALGVGGYPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD +YA+ LGV++  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPLYAQNLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGA+DI+VIDSVAAL PRAEI+G+MG++  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAIDIVVIDSVAALVPRAEIDGEMGDAHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I VFINQ+R K+G+MFG+PETT GG ALKFY+++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAVFINQIREKVGIMFGNPETTPGGRALKFYATIRLEVRRAEQLKSGTDIIGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E D+MYG+GIS  GEL+D+  +  IVDKSGAW+S+KG R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEVDLMYGQGISQEGELLDMASEQDIVDKSGAWYSYKGDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           +N+K +++E+ E+   I + +R+  G+   S + E A
Sbjct: 302 DNAKNYMKEHPEMKAEISTRVREAYGIGDGSEVPEKA 338


>gi|291301648|ref|YP_003512926.1| recA protein [Stackebrandtia nassauensis DSM 44728]
 gi|290570868|gb|ADD43833.1| recA protein [Stackebrandtia nassauensis DSM 44728]
          Length = 349

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/327 (62%), Positives = 262/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK+KAL+ AL+QI + +GKG++M+LG +  +   I+ + +GS+ LD+ALGIGG P+GRI+
Sbjct: 6   DKTKALDLALAQIDKQFGKGSVMKLGERPKV--DIKAIPTGSIALDVALGIGGLPRGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPE+SGKT+LALH IA  Q  GG  A VDAEHALD +YA  LGV+   LL+SQPDTG
Sbjct: 64  EIYGPEASGKTSLALHAIANVQAEGGIAAIVDAEHALDPVYAGNLGVNTDELLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGAVD+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T  +
Sbjct: 124 EQALEIADMLVRSGAVDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGGL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + +    +FINQ+R K+GV FGSPETT+GG ALKFY+SVRLDIRR+ ++KD     GN+T
Sbjct: 184 NNTGTTAIFINQLREKVGVFFGSPETTSGGKALKFYASVRLDIRRIETMKDGGEAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++SPF+Q EFDI+YGEGIS  G LIDLGV+  IV KSGAW++++G +LGQG+
Sbjct: 244 RVKVVKNKVSSPFRQAEFDILYGEGISREGSLIDLGVEEGIVRKSGAWYTYEGDQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           E  + FL+EN ++A  IE  +++  G+
Sbjct: 304 EKVRAFLKENPDLANEIEKKIKEKLGV 330


>gi|21624597|gb|AAM68118.1| RecA [Bordetella holmesii]
 gi|21624599|gb|AAM68119.1| RecA [Bordetella holmesii]
 gi|21624601|gb|AAM68120.1| RecA [Bordetella holmesii]
 gi|21624603|gb|AAM68121.1| RecA [Bordetella holmesii]
          Length = 296

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/275 (74%), Positives = 242/275 (88%), Gaps = 1/275 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+ G    +   I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 22  QIEKQFGKGSIMRYGDN-EVEHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 80

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGTCAFVDAEHALD  YA KLGV+L +LLISQPDTGEQALEITD LV
Sbjct: 81  TLTLQVIAEMQKIGGTCAFVDAEHALDVQYASKLGVNLADLLISQPDTGEQALEITDALV 140

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT++I R+ C+++FIN
Sbjct: 141 RSGSVDLIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFIN 200

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A 
Sbjct: 201 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKGDEVVGNETRVKVVKNKVAP 260

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
           PFKQ EFDIMYG GIS  GE+IDLGV A++V+KSG
Sbjct: 261 PFKQAEFDIMYGAGISREGEIIDLGVAANVVEKSG 295


>gi|154503919|ref|ZP_02040979.1| hypothetical protein RUMGNA_01745 [Ruminococcus gnavus ATCC 29149]
 gi|153795518|gb|EDN77938.1| hypothetical protein RUMGNA_01745 [Ruminococcus gnavus ATCC 29149]
          Length = 358

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 192/328 (58%), Positives = 266/328 (81%), Gaps = 2/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AA++++++ +GKG +M+LG    +   +E V +G L LD+ALG+GG PKGR++
Sbjct: 5   EKKKALDAAIAKLEKDFGKGTVMKLGEGSHV--AVETVPTGCLSLDLALGLGGVPKGRVI 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ LH IA+ QK GG   F+DAEHALD +YA+K+GVD+  L ISQPD+G
Sbjct: 63  EVYGPESSGKTTVTLHMIAEVQKRGGIAGFIDAEHALDPVYAKKIGVDIDELYISQPDSG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           +QALEI + +VRSGAVDIIVIDSVAAL P+ EIEGDMG+S  G+QARLMSQALRKLT  I
Sbjct: 123 DQALEIAETMVRSGAVDIIVIDSVAALVPKQEIEGDMGDSHVGLQARLMSQALRKLTPVI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S C+++FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+D+RR+ ++K    + GN+T
Sbjct: 183 SKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASVRMDVRRIETLKQSGEMVGNRT 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+K+VKNK+A PFK+ EFDIM+G+GIS  G+++DL V   +V KSGAW++++G+++GQGR
Sbjct: 243 RIKIVKNKIAPPFKEAEFDIMFGKGISKEGDVLDLAVGIDLVKKSGAWYAYEGEKIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338
           EN+K +L  + E+ E ++  +RQ+  L+
Sbjct: 303 ENAKAYLTSHPEVMEELDRKVRQHYHLI 330


>gi|325270385|ref|ZP_08136990.1| recombination protein A [Prevotella multiformis DSM 16608]
 gi|324987329|gb|EGC19307.1| recombination protein A [Prevotella multiformis DSM 16608]
          Length = 341

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/322 (64%), Positives = 267/322 (82%), Gaps = 2/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+AA+S+I++ +GKG+IM++G +    E +EV+ +GS+ LD ALG+GG+P+GRI+E
Sbjct: 15  KLKALQAAMSKIEKDFGKGSIMRMGDEQ--IEQVEVIPTGSVALDTALGVGGYPRGRIIE 72

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD GE
Sbjct: 73  IFGPESSGKTTLAIHAIAEAQKQGGIAAFIDAEHAFDRFYAEKLGVDVDNLWISQPDNGE 132

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RS A+DI+VIDSVAALTP+ EIEGDMG+S  G+QARLMSQALRKLTS+IS
Sbjct: 133 QALEIADQLIRSSAIDILVIDSVAALTPKKEIEGDMGDSAVGLQARLMSQALRKLTSTIS 192

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGVMFG+PETTTGGNALKFYSSVRLDIRRV SIKD D + GNQ R
Sbjct: 193 KTNTCCIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRVTSIKDGDQVIGNQVR 252

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF++ EF+I +GEGIS  GE++DLGV+  I+ KSG+WFS+K  +L QGR+
Sbjct: 253 VKVVKNKVAPPFRKAEFEITFGEGISKIGEIVDLGVQYGIIKKSGSWFSYKDTKLAQGRD 312

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
            +K  +++N E+AE +E L+++
Sbjct: 313 ATKTMIKDNPELAEELEGLIKE 334


>gi|221323088|ref|ZP_03604382.1| recombinase A [Bacillus subtilis subsp. subtilis str. SMY]
          Length = 347

 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/327 (62%), Positives = 265/327 (81%), Gaps = 3/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG +      I  V SGSL LD ALGIGG+P+GRI+
Sbjct: 3   DRQAALDMALKQIEKQFGKGSIMKLGEKTDTR--ISTVPSGSLALDTALGIGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ Q+   T AF+DAEHALD +YA+KLGV+++ LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVALHAIAEVQQQR-TAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTG 119

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDI+V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 120 EQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 179

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K  + + GN+T
Sbjct: 180 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT 239

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYGEGIS  GE+IDLG +  IV KSG+W+S++ +RLGQGR
Sbjct: 240 KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGR 299

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K FL+EN +I   I+  +R++ GL
Sbjct: 300 ENAKQFLKENKDIMLMIQEQIREHYGL 326


>gi|157284485|gb|ABV31090.1| RecA [Vibrio cholerae O1]
          Length = 337

 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 197/311 (63%), Positives = 257/311 (82%), Gaps = 2/311 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+LG   ++   +E +S+GSL LDIA G GG P GRIVEI+GPESSGKT
Sbjct: 2   QIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIAWGAGGLPMGRIVEIFGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L 
Sbjct: 60  TLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALA 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FIN
Sbjct: 120 RSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAA 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+ N+  +L+E+ 
Sbjct: 240 PFKEAHTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKEHP 299

Query: 322 EIAENIESLLR 332
           EIA  ++  LR
Sbjct: 300 EIANTLDKKLR 310


>gi|325954957|ref|YP_004238617.1| protein recA [Weeksella virosa DSM 16922]
 gi|323437575|gb|ADX68039.1| Protein recA [Weeksella virosa DSM 16922]
          Length = 332

 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/318 (65%), Positives = 263/318 (82%), Gaps = 1/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+  L ++ + YGKG +M++G   +I + IEV+ SGSLGLDIALG+GG+P+GR++
Sbjct: 6   NKKKALQLVLDKMDKAYGKGTVMRMGDS-AIDDKIEVIPSGSLGLDIALGVGGYPRGRVI 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA++QK GG  AF+DAEHA D  YA KLGV+++ L++SQPD G
Sbjct: 65  EIYGPESSGKTTLTLHAIAEAQKQGGIAAFIDAEHAFDRYYAEKLGVNIEELIVSQPDNG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L+RSGA+DIIVIDSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 125 EQALEIADNLIRSGAIDIIVIDSVAALTPKAEIEGEMGDSRMGLQARLMSQALRKLTATI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++KC  +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IK+ D + GN T
Sbjct: 185 NKTKCTAIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKNGDEVIGNHT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF+Q EFDIMYGEGIS  GE++DL V+  IV KSG+W+S+   +LGQGR
Sbjct: 245 KVKVVKNKVAPPFRQAEFDIMYGEGISKVGEILDLAVEKGIVQKSGSWYSYNESKLGQGR 304

Query: 311 ENSKIFLRENIEIAENIE 328
           +  K  LR+N E++E IE
Sbjct: 305 DAVKEVLRDNPELSEEIE 322


>gi|47678146|emb|CAF21836.1| RecA recombinase [Enterococcus pallens]
          Length = 350

 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 202/327 (61%), Positives = 262/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  ALEAA+ +I++ YGKG+IM+LG +  I + I  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKAALEAAMKKIEKNYGKGSIMKLGDK--IDQQISTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTVALHAIAEVQKQGGTAAFIDAEHALDPQYAQHLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDIIVIDSVAAL PRAEI+G+MG S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIIVIDSVAALVPRAEIDGEMGASHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I VFINQ+R K+G+MFG+PETT GG ALKFY++VRL++RR   +K+   I GN+T
Sbjct: 182 NKTKTIAVFINQIREKVGIMFGNPETTPGGRALKFYATVRLEVRRAEQLKNGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+  +  I+DKSGAW+S+K +R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGQGISQEGELLDMAAEQDIIDKSGAWYSYKEERIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K +L E+ ++   + S +R   G+
Sbjct: 302 ENAKKYLAEHPDMTAEVSSRVRAAYGI 328


>gi|310827659|ref|YP_003960016.1| recA protein [Eubacterium limosum KIST612]
 gi|308739393|gb|ADO37053.1| recA protein [Eubacterium limosum KIST612]
          Length = 386

 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 195/323 (60%), Positives = 261/323 (80%), Gaps = 1/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K +AL AAL  I++ +GKGA+M+LG + +  + ++V+S+ S+G+D+ALGIGG P+GRI+E
Sbjct: 20  KQEALNAALKNIEKTFGKGAVMRLGDESAKMD-VDVISTSSIGIDMALGIGGVPRGRIIE 78

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH +A++QK GG  AF+DAEHALD +YA+ LGVD+ NL++SQPDTGE
Sbjct: 79  IYGPESSGKTTIALHIVAEAQKAGGNAAFIDAEHALDPVYAKALGVDVDNLIVSQPDTGE 138

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI + LVRSGA+D+ V+DSVAAL PRAEI+G+MG+S  G+QARLMSQALRKL   I 
Sbjct: 139 QALEILEALVRSGAIDVAVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLAGIIK 198

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S    +FINQ+R K+GVM+G+PE TTGG ALKFYSSVR+DIRR+ ++K    + GN+TR
Sbjct: 199 KSNTAAIFINQLREKVGVMYGNPEVTTGGRALKFYSSVRMDIRRIETLKKGTDMIGNRTR 258

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
            K+VKNKMA PFK  EFDIMYGEGIS  G+++D+ V+ +I+ KSG+WFS+  +RLGQGR+
Sbjct: 259 AKIVKNKMAPPFKTAEFDIMYGEGISREGDILDMAVELNIIKKSGSWFSYGEERLGQGRD 318

Query: 312 NSKIFLRENIEIAENIESLLRQN 334
             K +L+EN E A+ +E  +R +
Sbjct: 319 KVKEYLKENPEFADAVEQKIRDH 341


>gi|256371456|ref|YP_003109280.1| recA protein [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008040|gb|ACU53607.1| recA protein [Acidimicrobium ferrooxidans DSM 10331]
          Length = 346

 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 195/328 (59%), Positives = 265/328 (80%), Gaps = 2/328 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +D+ KALE A++QI++ +GKG+IM++G    +   IE + +G++ LD+ALG+GG P+GRI
Sbjct: 1   MDRDKALETAIAQIEKQFGKGSIMRMGEHPEM--AIESIPTGAMALDLALGVGGLPRGRI 58

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGK+TLALH +A++Q+ GG CA++DAEHALD +YA+ +GVD+  LLISQPD 
Sbjct: 59  VEIYGPESSGKSTLALHVVAEAQRQGGRCAYIDAEHALDPVYAQAIGVDVDQLLISQPDY 118

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D+L+RSG++D++++DSVAALTP+AEIEGD+G+S  G+QARLMSQALRKLT++
Sbjct: 119 GEQALEIADLLIRSGSIDVVIVDSVAALTPKAEIEGDIGDSHVGLQARLMSQALRKLTAN 178

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +S++  + VFINQ+R KIGVM+GSPE T GG ALKFYSSVRLDIRRV SIKD   I G++
Sbjct: 179 LSKTNTLAVFINQLREKIGVMYGSPEVTPGGRALKFYSSVRLDIRRVESIKDGAEIVGSR 238

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            RVKVVKNK A PF+Q EFDI YG+GIS  G L+D+ V+  +V K+GAW+++ G++LGQG
Sbjct: 239 ARVKVVKNKCAPPFRQAEFDIAYGKGISREGSLLDVAVEMGLVKKAGAWYTYDGEQLGQG 298

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           REN K FL  N ++   ++  +R+   +
Sbjct: 299 RENVKAFLAANPQLMAELDVKVRERVAV 326


>gi|47678160|emb|CAF21843.1| RecA recombinase [Enterococcus villorum]
          Length = 346

 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 199/327 (60%), Positives = 263/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ YGKG+IM+LG +  I + +  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKAALDAALKKIEKNYGKGSIMKLGEK--IDQQVSTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+V+DSVAAL PRAEI+G+MG+S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E D+MYG+GIS  GEL+D+ V+  IVDKSGAW+S+K  R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKIAEVDVMYGQGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+KI++  + E+   I +L+R   G+
Sbjct: 302 ENAKIYMANHPEMMAEISALVRAAYGI 328


>gi|169836086|ref|ZP_02869274.1| recA protein [candidate division TM7 single-cell isolate TM7a]
          Length = 347

 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 206/322 (63%), Positives = 261/322 (81%), Gaps = 3/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL  A+ QI + +G G+IM+LG    +   +E++ SGSL LD+ALG GG+PKGRI+E
Sbjct: 21  KMKALNLAMEQITKQFGDGSIMKLGDAKKV--DVELLPSGSLSLDLALG-GGYPKGRIIE 77

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA+ QK GGT AF+DAEHALD  YARKLGVD +NLLI+QPD GE
Sbjct: 78  IYGPESSGKTTLTLHAIAEIQKQGGTAAFIDAEHALDPSYARKLGVDTENLLIAQPDNGE 137

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI + LVRS AVD+IV+DSVAALTP+AEI+GDMG+S  G+QARLMSQALRKLT  I+
Sbjct: 138 QALEIAETLVRSNAVDLIVVDSVAALTPQAEIDGDMGDSHMGLQARLMSQALRKLTGIIN 197

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +SK  ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIRR G IK  D I GN+T+
Sbjct: 198 KSKATVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRRTGQIKVGDDIIGNRTK 257

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNK+A PF+  EFDIMY EGIS  G+++DL  +  +V+KSGA++ + G+ +GQGR+
Sbjct: 258 VKIVKNKIAPPFRLAEFDIMYNEGISKTGDILDLAAQYGVVEKSGAFYKYGGETIGQGRD 317

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
            +K FL++N EI   I++ +R+
Sbjct: 318 KTKTFLKDNPEIMSEIDNKVRE 339


>gi|89894689|ref|YP_518176.1| hypothetical protein DSY1943 [Desulfitobacterium hafniense Y51]
 gi|89334137|dbj|BAE83732.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 346

 Score =  425 bits (1092), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/339 (62%), Positives = 275/339 (81%), Gaps = 5/339 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+ ALSQI++ +GKG+IM+LG + S    +EV+ +G L +DIALG+GG P+GR++
Sbjct: 5   DKLKALDMALSQIEKQFGKGSIMRLG-EASAKMAVEVIPTGCLAIDIALGVGGVPRGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH  A++QK GG  AF+DAEHALD +YA+ LGV++ NLL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHIAAEAQKLGGVAAFIDAEHALDPVYAKALGVNIDNLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+D+I+IDSVAAL PRAEIEG+MG+S  G+ ARLMSQALRKLT +I
Sbjct: 124 EQALEICEALVRSGAIDVIIIDSVAALVPRAEIEGEMGDSHVGLHARLMSQALRKLTGAI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S   ++FINQ+R K+G+MFG+PETTTGG ALKFY+SVRL++RR  ++K    + GN+T
Sbjct: 184 SKSNTCVIFINQIREKVGIMFGNPETTTGGRALKFYASVRLEVRRADTLKQGQDMIGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PFKQ EFDIMYGEGIS  G ++D+G +  I++KSGAW+S+KG+RLGQGR
Sbjct: 244 KVKVVKNKVAPPFKQAEFDIMYGEGISREGSMVDVGAELDIINKSGAWYSYKGERLGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQN----AGLVADSLLQE 345
           EN K FL++N EIA  IE  +R +    +  VAD + +E
Sbjct: 304 ENVKEFLKKNPEIAAEIEQGIRASIANVSAPVADDVQEE 342


>gi|257457975|ref|ZP_05623134.1| protein RecA [Treponema vincentii ATCC 35580]
 gi|257444688|gb|EEV19772.1| protein RecA [Treponema vincentii ATCC 35580]
          Length = 441

 Score =  425 bits (1092), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 206/330 (62%), Positives = 272/330 (82%), Gaps = 7/330 (2%)

Query: 8   NIVD---KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           NI D   K KALEAA  QI++ +G+G++M+LGS+     GIEV+ SGS+ LD ALGIGG+
Sbjct: 13  NITDADEKLKALEAARLQIEKEFGQGSLMKLGSKTEA-SGIEVIPSGSILLDEALGIGGY 71

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GRI+EI+GPESSGKTTLALH +A++QK GG  AFVDAEHALD  YA+KLGV++  L +
Sbjct: 72  PRGRIIEIFGPESSGKTTLALHVVAEAQKRGGIAAFVDAEHALDPQYAQKLGVNIDELWV 131

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           +QPD GEQALEIT+ LVRSGAVD+IV+DSVAALTP+AEI+G+MG+S  G+QARLMSQALR
Sbjct: 132 AQPDAGEQALEITENLVRSGAVDVIVVDSVAALTPQAEIDGEMGDSHMGLQARLMSQALR 191

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI--KDK 242
           KLT+ ISRSKCIL+FINQ+RMKIG+ +G+PETTTGGNALKFYSSVR+++R+ G +  KD+
Sbjct: 192 KLTAIISRSKCILIFINQIRMKIGIAYGNPETTTGGNALKFYSSVRIEVRK-GEVLGKDE 250

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           D   GN+ R+KVVKNK+A PF++VE +I++G+GIS +G L+D  VK  ++DK GAW+S+K
Sbjct: 251 DEAWGNKVRIKVVKNKVAPPFRKVELEILFGKGISPYGSLLDCAVKYELIDKKGAWYSYK 310

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLR 332
             ++GQG +N+  FL +N ++A ++E  LR
Sbjct: 311 EDKIGQGHDNAVKFLEDNPDVAIDLEKTLR 340


>gi|269836955|ref|YP_003319183.1| recA protein [Sphaerobacter thermophilus DSM 20745]
 gi|269786218|gb|ACZ38361.1| recA protein [Sphaerobacter thermophilus DSM 20745]
          Length = 352

 Score =  425 bits (1092), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/322 (63%), Positives = 257/322 (79%), Gaps = 1/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ +A+E A++QI+R +GKG+IM++G   S  + IE + +GS+ LD+ALG+GG P+GRI 
Sbjct: 3   ERDRAIELAMAQIERQFGKGSIMRMGEAESRLQ-IEAIPTGSIALDLALGVGGIPRGRIT 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLA H IA++QK GG  A++DAEHA D +YA + G+ L +LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLAQHIIAEAQKLGGVAAYIDAEHAFDPVYAERCGIKLDDLLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+D+IVIDSVAAL PRAEI+GDMG++  G+QARLMSQALRKLT +I
Sbjct: 122 EQALEICETLVRSGALDVIVIDSVAALVPRAEIDGDMGDAHVGLQARLMSQALRKLTGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SRS+  ++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+ +IK      G + 
Sbjct: 182 SRSRTAVIFINQLRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIETIKQGQESIGIRA 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RV+VVKNK+A PF+Q EFDIMY EGIS  G +ID+G    I+ KSGAWF    +RLGQGR
Sbjct: 242 RVRVVKNKVAPPFRQAEFDIMYNEGISAIGSIIDVGTDLGIIRKSGAWFYLGEERLGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           EN K FL+ N +I  +IE  +R
Sbjct: 302 ENVKEFLKANPDILRDIEQQIR 323


>gi|31540551|gb|AAP49238.1| RecA [Mycobacterium mucogenicum]
          Length = 315

 Score =  425 bits (1092), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 199/311 (63%), Positives = 254/311 (81%), Gaps = 2/311 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE AL+QI + +GKG++M+LG +    + I  + +GS+ LD+ALGIGG P+GR++
Sbjct: 7   DREKALELALAQIDKSFGKGSVMRLGEETR--QPISDIPTGSIALDVALGIGGLPRGRVI 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD   LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLVRSGAMDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+T
Sbjct: 185 NNSGTTAIFINQLRXKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFKQ EFDI+YG GIS  G LID+GV+   + KSG+WF++ G++LGQG+
Sbjct: 245 RVKIVKNKVAPPFKQAEFDILYGRGISREGSLIDMGVEHGFIRKSGSWFTYDGEQLGQGK 304

Query: 311 ENSKIFLRENI 321
           EN++ FL EN+
Sbjct: 305 ENARNFLLENV 315


>gi|323142772|ref|ZP_08077485.1| RecA protein [Succinatimonas hippei YIT 12066]
 gi|322417417|gb|EFY08038.1| RecA protein [Succinatimonas hippei YIT 12066]
          Length = 388

 Score =  425 bits (1092), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/322 (65%), Positives = 266/322 (82%), Gaps = 2/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + KALE A+ QI++ +GKGAIM+LG   S  + IE +S+GSL LDIALGIGG P GRI+E
Sbjct: 26  RQKALEMAMEQIEKQFGKGAIMRLGQ--SEIDDIEAISTGSLSLDIALGIGGLPMGRIIE 83

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL L  IAQ+QK G  CAF+DAEHALD +YA+KLGV ++N+ ISQPDTGE
Sbjct: 84  IYGPESSGKTTLTLELIAQAQKKGKICAFIDAEHALDPVYAKKLGVQVENVFISQPDTGE 143

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI + LVRSG +D++VIDSVAAL P+AEIEGDMG++  G+QARLMSQALRKLT  I 
Sbjct: 144 QALEICETLVRSGGIDLVVIDSVAALVPKAEIEGDMGDNHVGLQARLMSQALRKLTGIIK 203

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++ C++VFINQ+RMKIGVMFG+PETTTGGNALK+Y+SVRLDIR+   IKDK+ + GN+T+
Sbjct: 204 QANCMVVFINQLRMKIGVMFGNPETTTGGNALKYYASVRLDIRKGSPIKDKEEVIGNETK 263

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PFKQ  F I++  GI+  GELIDLGV+A IV+K+GAWFS+ G ++GQG+ 
Sbjct: 264 VKVVKNKVAPPFKQANFQILFNYGIAKNGELIDLGVQARIVEKTGAWFSYNGNKIGQGKV 323

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
           N+  FL E+ E+A+ IE+ +R+
Sbjct: 324 NAMRFLDEHPEVADEIEAKIRE 345


>gi|65306697|gb|AAY41901.1| RecA [Mycobacterium phocaicum]
          Length = 350

 Score =  425 bits (1092), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 198/314 (63%), Positives = 257/314 (81%), Gaps = 2/314 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE AL+QI + +GKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 7   DREKALELALAQIDKSFGKGSVMRLGEETR--QPISVIPTGSIALDVALGIGGLPRGRVI 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD   LL+SQPDTG
Sbjct: 65  EIFGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLVRSGAIDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+T
Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFKQ EFDI+YG GIS  G LID+GV+   + KSG+WF++ G++LGQG+
Sbjct: 245 RVKIVKNKVAPPFKQAEFDILYGRGISREGSLIDMGVEHGFIRKSGSWFTYDGEQLGQGK 304

Query: 311 ENSKIFLRENIEIA 324
           EN++ +L +N++ A
Sbjct: 305 ENARNYLLQNVDAA 318


>gi|157284489|gb|ABV31092.1| RecA [Vibrio cholerae O1]
          Length = 337

 Score =  425 bits (1092), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 197/312 (63%), Positives = 258/312 (82%), Gaps = 2/312 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKT
Sbjct: 2   QIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGE ALEI D L 
Sbjct: 60  TLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEPALEICDALA 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FIN
Sbjct: 120 RSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFY+SVR DIRR G+IK+ + + GN+TR+KVVKNK+A+
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYASVRWDIRRTGAIKEGEEVVGNETRIKVVKNKIAA 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+ N+  +L+EN 
Sbjct: 240 PFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKENP 299

Query: 322 EIAENIESLLRQ 333
           EIA+ ++  LR+
Sbjct: 300 EIAKTLDKKLRE 311


>gi|315453305|ref|YP_004073575.1| recA protein [Helicobacter felis ATCC 49179]
 gi|315132357|emb|CBY82985.1| recA protein [Helicobacter felis ATCC 49179]
          Length = 337

 Score =  425 bits (1092), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/324 (65%), Positives = 265/324 (81%), Gaps = 3/324 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+ A+ QI + +GKGA+M+ G +    E IE  S+GSLGLD+ALGIGG P+GRI+E
Sbjct: 5   KQKALDLAIRQIDKTFGKGALMRWGDKE--IEPIEATSTGSLGLDMALGIGGVPRGRIIE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IAQ+QK GG CAF+DAEHALD  YA+KLGVD+ NLLISQPDTGE
Sbjct: 63  IYGPESSGKTTLTLHVIAQAQKEGGVCAFIDAEHALDVEYAKKLGVDVDNLLISQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           +ALEI + L RSGAVD+I +DSVAALTPRAEIEGDMG+   G+QARLMSQALRK+T  + 
Sbjct: 123 EALEILETLARSGAVDVIAVDSVAALTPRAEIEGDMGDQHVGLQARLMSQALRKITGVLH 182

Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SVRLDIRR+ ++K  D   GN+ 
Sbjct: 183 KMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRLDIRRIATLKQNDQSIGNRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PFK+ EFD++YGEGIS  GELID GVK  IV+K+GAWFS++ ++LGQG+
Sbjct: 243 KVKVVKNKVAPPFKEAEFDVIYGEGISRVGELIDYGVKLEIVEKNGAWFSYQDKKLGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQN 334
           E S++ L+EN E+A  IE+ +++ 
Sbjct: 303 EASRLLLKENPELALEIEAKIKEK 326


>gi|156742909|ref|YP_001433038.1| recombinase A [Roseiflexus castenholzii DSM 13941]
 gi|189039603|sp|A7NN87|RECA_ROSCS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|156234237|gb|ABU59020.1| recA protein [Roseiflexus castenholzii DSM 13941]
          Length = 353

 Score =  425 bits (1092), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/344 (62%), Positives = 274/344 (79%), Gaps = 1/344 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AA+SQI R YGKG+IM++G   S    IEV+ +GS+ LDIALG+GG P+GR+V
Sbjct: 6   EKEKALAAAMSQIDRKYGKGSIMRMGEASSKL-AIEVIPTGSIALDIALGVGGVPRGRVV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLA H IA++QK GG  AF+DAEHA D +YA++ GVD+ NLL+SQPD G
Sbjct: 65  EIYGPESSGKTTLAQHIIAEAQKMGGVAAFIDAEHAFDPVYAKRCGVDVDNLLVSQPDYG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRS AVD++V+DSVAAL PRAEIEGDMG+SLPG+QARLMSQALRKL+ +I
Sbjct: 125 EQALEICETLVRSNAVDVVVVDSVAALVPRAEIEGDMGDSLPGLQARLMSQALRKLSGAI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S+ +++F+NQ+R+KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++K+     G++T
Sbjct: 185 SKSRVVVIFLNQLRLKIGVMFGSPETTTGGQALKFYASVRMDIRRIETLKNGQETIGSRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EFDIM+ EGIS  G ++D+GV+  I+ KSGAWF     RLGQGR
Sbjct: 245 RVKVVKNKVAPPFRQAEFDIMHNEGISRAGNILDVGVELDIIRKSGAWFYLGEDRLGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           EN+K FL EN  +A+ IE L+R +A     S+    A +  DDA
Sbjct: 305 ENAKQFLNENPALADEIERLIRAHAMAAPISIAASKADDVVDDA 348


>gi|221309569|ref|ZP_03591416.1| recombinase A [Bacillus subtilis subsp. subtilis str. 168]
 gi|221318816|ref|ZP_03600110.1| recombinase A [Bacillus subtilis subsp. subtilis str. JH642]
 gi|40070|emb|CAA36377.1| unnamed protein product [Bacillus subtilis]
          Length = 347

 Score =  425 bits (1092), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/327 (62%), Positives = 265/327 (81%), Gaps = 3/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG +      I  V SGSL LD ALGIGG+P+GRI+
Sbjct: 3   DRQAALDMALKQIEKQFGKGSIMKLGEKTDTR--ISTVPSGSLALDTALGIGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ Q+   T AF+DAEHALD +YA+KLGV+++ LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVALHAIAEVQQQR-TSAFIDAEHALDPVYAQKLGVNIEELLLSQPDTG 119

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDI+V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 120 EQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 179

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K  + + GN+T
Sbjct: 180 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT 239

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYGEGIS  GE+IDLG +  IV KSG+W+S++ +RLGQGR
Sbjct: 240 KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGR 299

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K FL+EN +I   I+  +R++ GL
Sbjct: 300 ENAKQFLKENKDIMLMIQEQIREHYGL 326


>gi|212696531|ref|ZP_03304659.1| hypothetical protein ANHYDRO_01069 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676467|gb|EEB36074.1| hypothetical protein ANHYDRO_01069 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 340

 Score =  424 bits (1091), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 200/324 (61%), Positives = 261/324 (80%), Gaps = 2/324 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL  A   I++ YGKGAIM++G    +   + V+ +G++ LD+ALG+GG P+GR++
Sbjct: 8   DKEKALSQAFKNIEKKYGKGAIMKMGEAPKV--DVTVIPTGAINLDMALGVGGLPRGRVI 65

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL LH IA+ QK G TCAF+DAEHA+D+ YA++LGV++  L+++QPDTG
Sbjct: 66  EIFGPESSGKTTLTLHCIAEDQKLGNTCAFIDAEHAMDAEYAKRLGVNIDELILAQPDTG 125

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL+I + LVRS AVD+IV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALR+LT  I
Sbjct: 126 EQALDIAESLVRSAAVDLIVVDSVAALVPRAEIEGEMGDSHMGLQARLMSQALRRLTGII 185

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S   ++FINQ+R KIGVMFG+PETTTGG ALKFYSSVRLDIRR+ +I+  D++ GN+T
Sbjct: 186 SKSNTTVIFINQLREKIGVMFGNPETTTGGRALKFYSSVRLDIRRIKTIQQGDNMVGNRT 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK VEFDIMYG GIS  G ++D  V   IV+K+G+W+S+ G++LGQGR
Sbjct: 246 RVKVVKNKVAPPFKVVEFDIMYGTGISKSGVILDSAVDKDIVEKAGSWYSYNGEKLGQGR 305

Query: 311 ENSKIFLRENIEIAENIESLLRQN 334
           EN K +L EN +I   IE+ LR++
Sbjct: 306 ENVKQYLEENEDILNEIENKLRES 329


>gi|304436681|ref|ZP_07396650.1| recombination protein A [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304370377|gb|EFM24033.1| recombination protein A [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 379

 Score =  424 bits (1091), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 203/321 (63%), Positives = 254/321 (79%), Gaps = 1/321 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + +ALE AL  I++ +GKGAIM+LG   +    +EV+S+G L LDIALG+GG P+GRI+E
Sbjct: 17  REEALENALQNIEKAHGKGAIMRLGEAKANM-NVEVISTGILPLDIALGVGGIPRGRIIE 75

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           ++GPESSGKTT+ LH IA++QK GG  AF+DAEHALD  YARKLGV+++ LLISQPDTGE
Sbjct: 76  VFGPESSGKTTVTLHMIAEAQKAGGIAAFIDAEHALDPEYARKLGVNIEELLISQPDTGE 135

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LV S A+DIIV+DSVAAL P++EIEGDMG S+ G+QARLMSQA+RKLT  IS
Sbjct: 136 QALEIVDALVHSAAIDIIVVDSVAALVPKSEIEGDMGTSVVGLQARLMSQAMRKLTGIIS 195

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +++   VFINQ+R KIGV +G+PE TTGG ALKFY+SVR+D+RR  SIK      GN+TR
Sbjct: 196 KTRTAAVFINQLREKIGVTYGNPEVTTGGRALKFYASVRIDVRRADSIKQGTESLGNRTR 255

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
            K+VKNK+A PFK  EFDIMYGEG+S  G +ID+GV+  IVDKSGAWFS++G RLGQG+E
Sbjct: 256 AKIVKNKVAPPFKTAEFDIMYGEGVSRLGSIIDMGVELDIVDKSGAWFSYEGTRLGQGKE 315

Query: 312 NSKIFLRENIEIAENIESLLR 332
           N+K  L E  E+   IE  +R
Sbjct: 316 NAKATLEEKPEMIAEIEEKIR 336


>gi|297571228|ref|YP_003697002.1| recA protein [Arcanobacterium haemolyticum DSM 20595]
 gi|296931575|gb|ADH92383.1| recA protein [Arcanobacterium haemolyticum DSM 20595]
          Length = 348

 Score =  424 bits (1091), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/329 (62%), Positives = 261/329 (79%), Gaps = 2/329 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           ++KALE AL QI R +GKG+ M+LG      + + V+ +GSL LD+ALGIGG P+GR+VE
Sbjct: 9   RAKALETALGQIDRQFGKGSAMRLGDAPP--QRVSVIPTGSLALDVALGIGGLPRGRVVE 66

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH +A +QK GG  AFVDAEHALD  YARKLGVD   L++SQPDTGE
Sbjct: 67  IYGPESSGKTTVALHAVANAQKAGGIAAFVDAEHALDPEYARKLGVDTDALIVSQPDTGE 126

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DML+RSGA+DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT ++S
Sbjct: 127 QALEIADMLIRSGALDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALS 186

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
            +    +FINQ+R KIGV +G+PETTTGG ALKFY+SVRLD+RR+ ++K+  +  GN+TR
Sbjct: 187 AAGTTAIFINQLREKIGVFYGNPETTTGGKALKFYASVRLDVRRIETLKEGSTPVGNRTR 246

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNKMA PFKQ EFDI+YG+GIS  G +IDL V   IV +SG+W++++G +LGQG+E
Sbjct: 247 VKVVKNKMAPPFKQAEFDILYGKGISTEGGIIDLAVDTGIVRRSGSWYTYEGDQLGQGKE 306

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVAD 340
            ++ FL +N EI++ IE  +    G+  D
Sbjct: 307 KARQFLLDNPEISDEIERKVLATIGINKD 335


>gi|224417674|ref|ZP_03655680.1| recombinase A [Helicobacter canadensis MIT 98-5491]
 gi|253827024|ref|ZP_04869909.1| recombinase A [Helicobacter canadensis MIT 98-5491]
 gi|313141218|ref|ZP_07803411.1| protein recA [Helicobacter canadensis MIT 98-5491]
 gi|253510430|gb|EES89089.1| recombinase A [Helicobacter canadensis MIT 98-5491]
 gi|313130249|gb|EFR47866.1| protein recA [Helicobacter canadensis MIT 98-5491]
          Length = 345

 Score =  424 bits (1091), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/354 (61%), Positives = 277/354 (78%), Gaps = 16/354 (4%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KA+E A+ QI + +GKGA+++LG +    E I+ +S+GSLGLDIALGIGG PKGRI+
Sbjct: 6   NKQKAIELAIKQIDKAFGKGALIRLGDKP--VEKIDAISTGSLGLDIALGIGGIPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLAL  +A+ QK GG CAF+DAEHALD  YA++LGVD++NLL+SQPD G
Sbjct: 64  EIYGPESSGKTTLALQVVAECQKKGGICAFIDAEHALDVTYAKRLGVDVENLLVSQPDFG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L RSG VD+I+IDSVAALTP++EIEGDMG+   G+QARLMSQALRK+T  I
Sbjct: 124 EQALEILETLTRSGGVDLIIIDSVAALTPKSEIEGDMGDQHVGLQARLMSQALRKVTGVI 183

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIGVM +GSPETTTGGNALKFY+SVR+D+RR+ ++K  +   GN+
Sbjct: 184 HKMNTTVIFINQIRMKIGVMGYGSPETTTGGNALKFYASVRIDVRRIATLKQGEQNIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF+  EFDIM+GEGIS  GELID GVK  IVDKSGAWFS++ ++LGQG
Sbjct: 244 VKAKVVKNKVAPPFRGAEFDIMFGEGISKEGELIDYGVKLDIVDKSGAWFSYEDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           +EN+KIFL+EN EIA+ IE  ++              +I+  DD   DD +N+E
Sbjct: 304 KENAKIFLKENPEIAQEIEEKIK-------------ASISVTDDLSADDDENLE 344


>gi|288927334|ref|ZP_06421181.1| protein RecA [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330168|gb|EFC68752.1| protein RecA [Prevotella sp. oral taxon 317 str. F0108]
          Length = 341

 Score =  424 bits (1091), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 207/322 (64%), Positives = 268/322 (83%), Gaps = 2/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+AA+S+I++ +GKG+IM++G +    E +EV+ +GS+GLD+ALG+GG+P+GRI+E
Sbjct: 15  KLKALQAAMSKIEKDFGKGSIMKMGDEQ--IENVEVIPTGSIGLDVALGVGGYPRGRIIE 72

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD GE
Sbjct: 73  IYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAEKLGVDVANLWISQPDNGE 132

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RS A+DI+V+DSVAALTP+ EIEGDMG++  G+QARLMSQALRKLTS+IS
Sbjct: 133 QALEIADQLIRSSAIDILVVDSVAALTPKKEIEGDMGDNNVGLQARLMSQALRKLTSTIS 192

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR+V SIKD D+I GNQ R
Sbjct: 193 KTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRKVTSIKDGDNIVGNQVR 252

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF++ EF+I +GEGIS  GE++DLGV+  I+ KSG+WFS+   +LGQGR+
Sbjct: 253 VKVVKNKVAPPFRKTEFEITFGEGISKVGEILDLGVEYEIIKKSGSWFSYNEAKLGQGRD 312

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
            +K  L++N E+ E +E+ + Q
Sbjct: 313 ATKNLLKDNPELCEELEAKIMQ 334


>gi|254457227|ref|ZP_05070655.1| protein RecA [Campylobacterales bacterium GD 1]
 gi|207086019|gb|EDZ63303.1| protein RecA [Campylobacterales bacterium GD 1]
          Length = 345

 Score =  424 bits (1091), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 202/328 (61%), Positives = 264/328 (80%), Gaps = 3/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+ A+ QI + +GKGA+M+LG +    E I+ +S+GSLGLD+ALGIGG P+GR+V
Sbjct: 4   NKQKSLDLAMKQIDKAFGKGALMRLGDKD--IEPIKSISTGSLGLDLALGIGGVPQGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLAL   A+ QK GG CAF+DAEHALD +YA+ LGVD++NLL+SQPD G
Sbjct: 62  EIYGPESSGKTTLALQITAECQKNGGVCAFIDAEHALDVVYAKNLGVDVENLLVSQPDYG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL+I + + RSGA+D+IVIDSVAALTP++EIEG+M +   G+QARLMS+ALRKLT  I
Sbjct: 122 EQALDIVETIARSGAIDLIVIDSVAALTPKSEIEGEMSDQNVGVQARLMSKALRKLTGVI 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           S+  C ++FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+D+RR+ S+K  +S  GN+
Sbjct: 182 SKMNCTVIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDVRRIASLKQGESQIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KV+KNK+A PF+Q EFDIM+GEGIS  GEL+D GVK  I+DKSGAWFS++  +LGQG
Sbjct: 242 VKAKVIKNKVAPPFRQAEFDIMFGEGISKEGELVDYGVKLDIIDKSGAWFSYEETKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           REN K   ++  E+A  IE  ++   G+
Sbjct: 302 RENVKAKFKDEPELAREIEEKIKVAMGV 329


>gi|221313893|ref|ZP_03595698.1| recombinase A [Bacillus subtilis subsp. subtilis str. NCIB 3610]
          Length = 347

 Score =  424 bits (1091), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 207/329 (62%), Positives = 266/329 (80%), Gaps = 7/329 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG +      I  V SGSL LD ALGIGG+P+GRI+
Sbjct: 3   DRQAALDMALKQIEKQFGKGSIMKLGEKTDTR--ISTVPSGSLALDTALGIGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIA--QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           E+YGPESSGKTT+ALH IA  Q Q+TG   AF+DAEHALD +YA+KLGV+++ LL+SQPD
Sbjct: 61  EVYGPESSGKTTVALHAIAEVQQQRTG---AFIDAEHALDPVYAQKLGVNIEELLLSQPD 117

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDI+V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 118 TGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 177

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K  + + GN
Sbjct: 178 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGN 237

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK+A PF+  E DIMYGEGIS  GE+IDLG +  IV KSG+W+S++ +RLGQ
Sbjct: 238 KTKIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQ 297

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGL 337
           GREN+K FL+EN +I   I+  +R++ GL
Sbjct: 298 GRENAKQFLKENKDIMLMIQEQIREHYGL 326


>gi|325849670|ref|ZP_08170873.1| RecA protein [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480011|gb|EGC83089.1| RecA protein [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 349

 Score =  424 bits (1091), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 200/324 (61%), Positives = 261/324 (80%), Gaps = 2/324 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL  A   I++ YGKGAIM++G    +   + V+ +G++ LD+ALG+GG P+GR++
Sbjct: 8   DKEKALSQAFKNIEKKYGKGAIMKMGEAPKV--DVTVIPTGAINLDMALGVGGLPRGRVI 65

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL LH IA+ QK G TCAF+DAEHA+D+ YA++LGV++  L+++QPDTG
Sbjct: 66  EIFGPESSGKTTLTLHCIAEDQKLGNTCAFIDAEHAMDAEYAKRLGVNIDELILAQPDTG 125

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL+I + LVRS AVD+IV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALR+LT  I
Sbjct: 126 EQALDIAESLVRSAAVDLIVVDSVAALVPRAEIEGEMGDSHMGLQARLMSQALRRLTGII 185

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S   ++FINQ+R KIGVMFG+PETTTGG ALKFYSSVRLDIRR+ +I+  D++ GN+T
Sbjct: 186 SKSNTTVIFINQLREKIGVMFGNPETTTGGRALKFYSSVRLDIRRIKTIQQGDNMVGNRT 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK VEFDIMYG GIS  G ++D  V   IV+K+G+W+S+ G++LGQGR
Sbjct: 246 RVKVVKNKVAPPFKVVEFDIMYGTGISKSGVILDSAVDKDIVEKAGSWYSYNGEKLGQGR 305

Query: 311 ENSKIFLRENIEIAENIESLLRQN 334
           EN K +L EN +I   IE+ LR++
Sbjct: 306 ENVKQYLEENEDILNEIENKLRES 329


>gi|303245635|ref|ZP_07331918.1| recA protein [Desulfovibrio fructosovorans JJ]
 gi|302492898|gb|EFL52763.1| recA protein [Desulfovibrio fructosovorans JJ]
          Length = 356

 Score =  424 bits (1091), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 207/327 (63%), Positives = 264/327 (80%), Gaps = 3/327 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +++AL  AL+ I+R +G+GA+M+L     +   I  + +GS+GLD+ALGIGG PKGRI E
Sbjct: 13  RNEALATALTTIERKHGQGAVMRLDDAAHV--KIPSIPTGSIGLDLALGIGGIPKGRITE 70

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH IA+SQK GGT AF+DAEHALD  YAR+LGV+   LLISQPD GE
Sbjct: 71  IYGPESSGKTTLALHIIAESQKLGGTAAFIDAEHALDVNYARRLGVNTPELLISQPDYGE 130

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL+I D+LVRSGAVD++VIDSVAAL P+AE+EG+MGE+  G QARLMS A+RKLT +I 
Sbjct: 131 QALDIADLLVRSGAVDVVVIDSVAALIPQAELEGEMGETQVGGQARLMSHAMRKLTGTIH 190

Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +S+  ++FINQ+RMKIG+  +GSPETTTGGNALKFY+SVRLDIRR+ ++KDK+   G++ 
Sbjct: 191 KSQTSVIFINQIRMKIGMTGYGSPETTTGGNALKFYASVRLDIRRIQTLKDKEETYGSRC 250

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++ +FDI+YG G+S  GELID+GV A IVDKSGAWFSF  +RLGQGR
Sbjct: 251 RVKVVKNKVAPPFREAQFDILYGTGVSREGELIDMGVDAGIVDKSGAWFSFGSERLGQGR 310

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           +N + FL+E+ +I   IE  L ++ G 
Sbjct: 311 DNVRAFLQEHTDIRGQIEGKLLEHLGF 337


>gi|76363330|sp|Q6KCJ3|RECA_ENTMU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|47678144|emb|CAF21835.1| RecA recombinase [Enterococcus mundtii]
          Length = 346

 Score =  424 bits (1091), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/327 (61%), Positives = 262/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ YGKG+IM+LG +  I + I  + SGSL LD+ALGIGG+P+GRI+
Sbjct: 4   DRKAALDAALKKIEKNYGKGSIMKLGEK--IDQQISTIPSGSLALDVALGIGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+VIDSVAAL PRAEI+G+MG+S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVIDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E D+MYG GIS  GEL+D+ V+  IVDKSGAW+S+K  R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKIAEVDVMYGLGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+KI++  + E+   + +L+R   G+
Sbjct: 302 ENAKIYMSNHPEMMAEVSTLVRAAYGI 328


>gi|167769114|ref|ZP_02441167.1| hypothetical protein ANACOL_00437 [Anaerotruncus colihominis DSM
           17241]
 gi|167668754|gb|EDS12884.1| hypothetical protein ANACOL_00437 [Anaerotruncus colihominis DSM
           17241]
          Length = 392

 Score =  424 bits (1090), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 209/334 (62%), Positives = 273/334 (81%), Gaps = 6/334 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE AL QI++ +GKGA+M+LG   ++   +E +S+GSL LDIALGIGG P+GRI+
Sbjct: 22  DRKKALETALGQIEKQFGKGAVMKLGQDSTL--NVEAISTGSLSLDIALGIGGVPRGRII 79

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG+  F+D EHALD +YA+ LGVD+ +LL+SQPDTG
Sbjct: 80  EIYGPESSGKTTVALHVVAQAQKEGGSAVFIDVEHALDPVYAQALGVDIDSLLVSQPDTG 139

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+D++V+DSVAA+  +AEIEGDMG+S  G+QARLMSQALRKLT +I
Sbjct: 140 EQALEICEALVRSGAIDVVVVDSVAAMVTKAEIEGDMGDSHVGLQARLMSQALRKLTGAI 199

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+++FINQ+R KIGVM+G+PETT GG ALKFY+SVRLD+RRV ++K+   + GN+T
Sbjct: 200 GKSNCVVIFINQLREKIGVMYGNPETTPGGRALKFYASVRLDVRRVEALKNGTELIGNRT 259

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFK+ EFDIMYGEGIS  GE++DL  K  IV + G+WF++   RLGQGR
Sbjct: 260 RVKVVKNKVSPPFKEAEFDIMYGEGISKVGEILDLATKLDIVVRGGSWFNYGETRLGQGR 319

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
           +N+K FL+ N EIA+ IE+ +R+N    AD LL+
Sbjct: 320 DNAKEFLKANPEIAQEIETKVREN----ADKLLK 349


>gi|308183950|ref|YP_003928083.1| recombinase A [Helicobacter pylori SJM180]
 gi|308059870|gb|ADO01766.1| recombinase A [Helicobacter pylori SJM180]
          Length = 347

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/327 (60%), Positives = 264/327 (80%), Gaps = 3/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+  A+ QI +V+GKGA+++LG +    E I+ +S+GSLGLD+ALGIGG PKGRI+
Sbjct: 6   DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDAISTGSLGLDLALGIGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQP TG
Sbjct: 64  EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  +
Sbjct: 124 EEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    L+FINQ+RMKIG+  +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+
Sbjct: 184 HKMNTTLIFINQIRMKIGMTGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF++ EFDIM+GEGIS  GE+ID GVK  IVDKSGAW S++ ++LGQG
Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336
           REN+K+ L+E+  +A+ I   ++++ G
Sbjct: 304 RENAKVLLKEDKALADEITLKIKESIG 330


>gi|189502646|ref|YP_001958363.1| recombinase A [Candidatus Amoebophilus asiaticus 5a2]
 gi|189498087|gb|ACE06634.1| hypothetical protein Aasi_1324 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 354

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/323 (61%), Positives = 263/323 (81%), Gaps = 3/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL++ + ++++ YGKG +M+L  +  +   I  +S+GSL LD+ALGIGG P+GR++
Sbjct: 6   EKIKALQSVIDKLEKSYGKGTVMKLSDEKVV--DIPAISTGSLSLDLALGIGGLPRGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL+L  IA++QK GG  AF+DAEHA D  YA KLG+D +NL I+QPD G
Sbjct: 64  EVYGPESSGKTTLSLQCIAEAQKQGGMAAFIDAEHAFDKNYAEKLGIDTENLYIAQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L+RS A+DIIVIDSVAAL P++E+EG+MG+S  G+QARLMSQALRKLT +I
Sbjct: 124 EQALEIAENLIRSSAIDIIVIDSVAALVPKSELEGEMGDSKMGLQARLMSQALRKLTGAI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQ 249
           S++ CI +FINQ+R KIGVMFG+PETTTGGNALKFYSSVRLDIRRV +IKD + ++ GN+
Sbjct: 184 SKTGCICIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRVTTIKDAEGNMVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFK VEFDI+YGEGIS  GE+ID+GV+  ++ KSG+WFS++G +L QG
Sbjct: 244 TRVKVVKNKVAPPFKVVEFDILYGEGISKVGEIIDIGVELGVIQKSGSWFSYEGNKLAQG 303

Query: 310 RENSKIFLRENIEIAENIESLLR 332
           RE  K  L++N E+ E +E  ++
Sbjct: 304 REAVKALLKDNPELTEKLERQIK 326


>gi|74318215|ref|YP_315955.1| recombinase A [Thiobacillus denitrificans ATCC 25259]
 gi|74057710|gb|AAZ98150.1| RecA DNA recombination protein [Thiobacillus denitrificans ATCC
           25259]
          Length = 364

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 220/343 (64%), Positives = 282/343 (82%), Gaps = 7/343 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKSKAL AAL QI++ +GKG++M+LG    +   I+ VS+GSLGLDIALG+GG P+GR++
Sbjct: 24  DKSKALAAALGQIEKQFGKGSVMRLGDH-DVSRDIQAVSTGSLGLDIALGVGGLPRGRVI 82

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGVD+ NLL+SQPDTG
Sbjct: 83  EIYGPESSGKTTLTLQVIAEMQKMGGTAAFIDAEHALDPSYAHKLGVDVDNLLVSQPDTG 142

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VD++V+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 143 EQALEIADMLVRSGSVDVVVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLTANI 202

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK  D I GN+T
Sbjct: 203 KRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKKGDEIIGNET 262

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK++ PFK+  FDI+YG+GIS  GE+I+LGV   +VDKSGAW+++ G+++GQG+
Sbjct: 263 KVKVVKNKVSPPFKEAYFDILYGQGISREGEIIELGVAHKLVDKSGAWYAYNGEKIGQGK 322

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           +N++ FL+E+ EIA  IE+ +R   G      +  P I  +D+
Sbjct: 323 DNAREFLKEHPEIAHEIEAKVRAAVG------VNNPTIAVEDE 359


>gi|227873744|ref|ZP_03991974.1| recombination protein RecA [Oribacterium sinus F0268]
 gi|227840424|gb|EEJ50824.1| recombination protein RecA [Oribacterium sinus F0268]
          Length = 375

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/350 (59%), Positives = 275/350 (78%), Gaps = 2/350 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AALS+I++  GKG++M+LG  G + + I VV +GSL +DIALG GGFP+GRI+
Sbjct: 18  EKLKALDAALSKIEKDCGKGSVMKLGDSG-VNKDISVVPTGSLSVDIALGAGGFPRGRII 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH +A+ QK GG  AF+DAEHALD  YA+ +GVD+ NL ++QPD+G
Sbjct: 77  EIYGPESSGKTTLALHAVAEVQKRGGIAAFIDAEHALDPRYAQAIGVDIDNLYVAQPDSG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL+I + +VRSGA+DI+V+DSVAAL P+AEI+G+MG+S  G+QARLMS ALRKLT+ I
Sbjct: 137 EQALDIVETMVRSGAMDILVVDSVAALVPKAEIDGEMGDSHVGLQARLMSMALRKLTAII 196

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQ 249
           ++S CIL+FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+DIR+  SIK  D   +G +
Sbjct: 197 AKSNCILIFINQLREKVGVMFGNPETTTGGRALKFYASVRVDIRKGESIKTGDGDFSGAR 256

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           T+VK+ KNK+A PFK  EFDI +G GIS  GE++DL V+  +++KSGAWF++KG ++GQG
Sbjct: 257 TKVKISKNKIAPPFKNAEFDISFGSGISKEGEILDLAVEKKMIEKSGAWFAYKGDKIGQG 316

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           REN+K FL+ +  I  ++E  LR+  GL  D  L+E      +D D D T
Sbjct: 317 RENAKAFLKSHPRIMADLEIQLRKEYGLKEDPYLEEVLAFVPEDEDMDLT 366


>gi|307694319|ref|ZP_07636556.1| recombinase A [Ruminococcaceae bacterium D16]
          Length = 369

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/325 (63%), Positives = 267/325 (82%), Gaps = 2/325 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KALE A++QI+R YGKG+IM+LG    +   +E + +GSL LD+ALGIGG P+GRI+
Sbjct: 16  DKKKALETAMAQIERAYGKGSIMRLGENVDVM--VESIPTGSLSLDLALGIGGMPRGRII 73

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH +A++QK GG  AF+DAEHALD  YAR LGVD+ ++LI+QPDTG
Sbjct: 74  EIYGPESSGKTTLALHVVAEAQKRGGEVAFIDAEHALDPTYARALGVDIDSMLIAQPDTG 133

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI + LVRSGA+D++V+DSVAALTPRAEIEGDMG+S  G+ ARLMSQALRKL  SI
Sbjct: 134 EQGLEICEALVRSGAIDVVVVDSVAALTPRAEIEGDMGDSHVGLLARLMSQALRKLAGSI 193

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++ CI++FINQ+R K+GV++G+PE TTGG ALKFYSSVR+D+RR+ ++K    I GN+T
Sbjct: 194 AKTNCIVIFINQLREKVGVVYGNPEVTTGGRALKFYSSVRIDVRRIEALKSGSEIIGNRT 253

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R K+VKNK+A PF++ EFDIMYGEGIS  GELIDLGVK  +V KSG+WF+    RLGQGR
Sbjct: 254 RAKIVKNKVAPPFREAEFDIMYGEGISKVGELIDLGVKLDLVQKSGSWFAMGELRLGQGR 313

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
           + +K FLR+N ++A+ +E+ +R N+
Sbjct: 314 DAAKQFLRDNPDLADELEAKIRANS 338


>gi|242280582|ref|YP_002992711.1| recombinase A [Desulfovibrio salexigens DSM 2638]
 gi|242123476|gb|ACS81172.1| recA protein [Desulfovibrio salexigens DSM 2638]
          Length = 355

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/355 (59%), Positives = 275/355 (77%), Gaps = 9/355 (2%)

Query: 4   RKEMNIVDKSKA-LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
           +K  N  D  KA L  AL+ I+R +GKG+IM+L S+ S    I V+ +GS+ LD+ALGIG
Sbjct: 3   KKNANPEDLRKAALSTALTTIERKFGKGSIMRLDSEAS--HNIPVIPTGSISLDMALGIG 60

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G PKGRI E+YGPESSGKTTLALH IA+ Q+ GGT AFVDAEHALD  YA++LGV+   L
Sbjct: 61  GIPKGRITEVYGPESSGKTTLALHVIAECQRAGGTAAFVDAEHALDVKYAKRLGVNTDEL 120

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           LISQPD GEQALEITD+LVRSGAVDI++IDSVAAL P+AE+EG+MGE+  G QARLMS A
Sbjct: 121 LISQPDYGEQALEITDLLVRSGAVDIVIIDSVAALIPQAELEGNMGETQVGGQARLMSHA 180

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           LRKLT +I +SK +++FINQ+RMKIG+  +GSPETT+GGNALKFYSSVRLDIR++ ++KD
Sbjct: 181 LRKLTGTIHKSKAVVLFINQIRMKIGMTGYGSPETTSGGNALKFYSSVRLDIRKIQTLKD 240

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
           K+ + G++TR+K++KNK+A PF++   DI+YG G+S  GEL+DLGV+  IVDKSGAW++F
Sbjct: 241 KEEVFGSRTRIKIIKNKVAPPFREALVDILYGTGMSREGELLDLGVEHGIVDKSGAWYAF 300

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
             +RLGQG+EN + FL E  E+ + IE  L  + G+  D     P +N  +  D+
Sbjct: 301 GSERLGQGKENVRQFLAETPELRQQIEDKLLIHLGMKED-----PDMNVDEKVDE 350


>gi|293553653|ref|ZP_06674277.1| protein RecA [Enterococcus faecium E1039]
 gi|291602228|gb|EFF32456.1| protein RecA [Enterococcus faecium E1039]
          Length = 349

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/335 (59%), Positives = 266/335 (79%), Gaps = 2/335 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ YGKG+IM+LG +  I + I  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKAALDAALKKIEKSYGKGSIMKLGEK--IDQQISTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+V+DSVAAL PRAEI+G+MG+S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E D+MYG GIS  GEL+D+ V+  IVDKSGAW+S+K  R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKIAEVDVMYGLGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           EN+KI++  + E+   + +L+R   G+  ++ + E
Sbjct: 302 ENAKIYMANHPEMMAEVSALVRAAYGIGEEAAVPE 336


>gi|222151124|ref|YP_002560278.1| recombinase RecA [Macrococcus caseolyticus JCSC5402]
 gi|254790437|sp|B9EBH1|RECA_MACCJ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|222120247|dbj|BAH17582.1| recombinase RecA [Macrococcus caseolyticus JCSC5402]
          Length = 353

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/329 (60%), Positives = 261/329 (79%), Gaps = 2/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+  +  +++ +GKGA+M+LG +      +  VSSGS+ LD ALG+GG+PKGRI+
Sbjct: 3   ERQKALDTVIKNMEKSFGKGAVMKLGDRTD--RNVSTVSSGSITLDSALGVGGYPKGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ Q+ GG  AF+DAEHALD +YA+ LGVD++NL +SQPD G
Sbjct: 61  EIYGPESSGKTTVALHAIAEVQRQGGVAAFIDAEHALDPVYAKNLGVDIENLYLSQPDHG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI +  VRSGAVDIIV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKL+ S+
Sbjct: 121 EQGLEIAEAFVRSGAVDIIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLSGSV 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S  I +FINQ+R KIGVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T
Sbjct: 181 SKSNTIAIFINQVREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GE++DLG +  ++ KSGAW+S+ G+R+GQGR
Sbjct: 241 KIKVVKNKVAPPFKVAEVDIMYGKGISREGEIVDLGAEYEVLQKSGAWYSYDGERIGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           EN K +L+EN E+ + I+  +R+  G+ A
Sbjct: 301 ENIKTYLKENPEVRDEIDQKIRKAMGVGA 329


>gi|300776146|ref|ZP_07086005.1| recombination protein A [Chryseobacterium gleum ATCC 35910]
 gi|300505279|gb|EFK36418.1| recombination protein A [Chryseobacterium gleum ATCC 35910]
          Length = 333

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/327 (64%), Positives = 265/327 (81%), Gaps = 2/327 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           NI DK KAL   L ++ + YGKG +M LG   ++   IEV+ SGSLGLDIALG+GG+PKG
Sbjct: 3   NIDDKKKALALVLDKLDKTYGKGTVMTLGDD-AVDTTIEVIPSGSLGLDIALGVGGYPKG 61

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EIYGPESSGKTTL LH IA++QK GG  AF+DAEHA D  YA KLG+DL+NL+ISQP
Sbjct: 62  RIIEIYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAEHAFDRTYAAKLGIDLENLIISQP 121

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI D L+RSGA+DI+VIDSVAALTP+AEIEG+MG+S  G+ ARLMSQALRKLT
Sbjct: 122 DNGEQALEIADNLIRSGAIDIVVIDSVAALTPKAEIEGEMGDSKMGLHARLMSQALRKLT 181

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS-IKDKDSIT 246
           ++ISR+KC ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVR+DIR+  + IK  D   
Sbjct: 182 ATISRTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRIDIRKASAPIKQGDEAI 241

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G++ +VK+VKNK+A PFKQ EFDIMYGEG+S  GE++D  V   IV KSG+WFS++  +L
Sbjct: 242 GSRVKVKIVKNKVAPPFKQAEFDIMYGEGVSKVGEILDTAVDMGIVKKSGSWFSYEETKL 301

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333
           GQGR+  K  LR+N ++AE +E+ +++
Sbjct: 302 GQGRDAVKDVLRDNPDLAEELEAKIKE 328


>gi|308237897|emb|CBK52095.1| RecA protein [Acidithiobacillus ferrooxidans]
          Length = 268

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 197/268 (73%), Positives = 235/268 (87%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LD+ALG+GG P+GR+VEIYGPESSGKTTL LH IA  Q  GGT AF+DAEHALD  YA K
Sbjct: 1   LDLALGVGGLPRGRVVEIYGPESSGKTTLTLHAIASCQAAGGTAAFIDAEHALDPSYAHK 60

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           LGVDL+NLLISQPDTGEQALEI DMLVRSGAVD+IVIDSVAALTP+AEIEGDMG+S  G+
Sbjct: 61  LGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGDMGDSHVGL 120

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
           QARLMSQALRKLT++ISR+  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIR
Sbjct: 121 QARLMSQALRKLTANISRTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIR 180

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK 294
           R+G+IK  D + GN TRVKVVKNK+A PF++ EF I YGEGIS   EL+DLGVK  IV+K
Sbjct: 181 RIGAIKKSDEVVGNDTRVKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVKFDIVEK 240

Query: 295 SGAWFSFKGQRLGQGRENSKIFLRENIE 322
           SGAW+S++G+R+GQG++N+  +L+E+ E
Sbjct: 241 SGAWYSYQGERIGQGKDNAPQYLKEHPE 268


>gi|260911216|ref|ZP_05917818.1| recombination protein A [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634646|gb|EEX52734.1| recombination protein A [Prevotella sp. oral taxon 472 str. F0295]
          Length = 341

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/322 (64%), Positives = 267/322 (82%), Gaps = 2/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+AA+S+I++ +GKG+IM++G +    E +EV+ +GS+GLD+ALG+GG+P+GRI+E
Sbjct: 15  KLKALQAAMSKIEKDFGKGSIMKMGDEQ--IENVEVIPTGSIGLDVALGVGGYPRGRIIE 72

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD GE
Sbjct: 73  IYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAEKLGVDMANLWISQPDNGE 132

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RS A+DI+VIDSVAALTP+ EIEGDMG++  G+QARLMSQALRKLTS+IS
Sbjct: 133 QALEIADQLIRSSAIDILVIDSVAALTPKKEIEGDMGDNNVGLQARLMSQALRKLTSTIS 192

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR+V  IKD D+I GNQ R
Sbjct: 193 KTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRKVTGIKDGDTIVGNQVR 252

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF++ EF+I +GEGIS  GE++DLGV+  I+ KSG+WFS+   +LGQGR+
Sbjct: 253 VKVVKNKVAPPFRKTEFEITFGEGISKVGEILDLGVEYDIIKKSGSWFSYNDAKLGQGRD 312

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
            +K  L++N E+ E +E+ + Q
Sbjct: 313 ATKALLKDNPELCEELEAKIMQ 334


>gi|31540535|gb|AAP49230.1| RecA [Mycobacterium abscessus ATCC 19977]
          Length = 306

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 198/303 (65%), Positives = 254/303 (83%), Gaps = 2/303 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE AL+QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 6   DREKALELALAQIDKSFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLVRSGAIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD     GN+T
Sbjct: 184 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG+
Sbjct: 244 RVKVVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGK 303

Query: 311 ENS 313
           EN+
Sbjct: 304 ENA 306


>gi|23099079|ref|NP_692545.1| recombinase A [Oceanobacillus iheyensis HTE831]
 gi|30173249|sp|Q8CXG7|RECA_OCEIH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|22777307|dbj|BAC13580.1| multifunctional protein involved in homologous recombination
           (recombinase) [Oceanobacillus iheyensis HTE831]
          Length = 347

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/327 (61%), Positives = 261/327 (79%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ +AL+ AL QI++ +GKG+IM++G   +    I  + SGSL LD+ALGIGG+P+GR+V
Sbjct: 3   DRKQALDMALRQIEKQFGKGSIMKMGE--NEIPKIATIPSGSLALDVALGIGGYPRGRVV 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA++QK GG  AF+DAEHALD +YA+ LGV++  LL+SQPDTG
Sbjct: 61  EIYGPESSGKTTVALHAIAEAQKQGGQAAFIDAEHALDPVYAKALGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDIIV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK   +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR  ++K  +   GN+ 
Sbjct: 181 NKSKTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKLGNDAVGNKA 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PFKQ E DIMYG+GIS  GE++D+G    IV KSGAW+S+   RLGQGR
Sbjct: 241 RIKVVKNKVAPPFKQAEVDIMYGKGISKEGEVLDIGSDLDIVMKSGAWYSYNNDRLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K +L+E+ E+   I   +RQ+  L
Sbjct: 301 ENAKQYLKEHEEVLTEIHQSIRQHYEL 327


>gi|89100714|ref|ZP_01173570.1| RecA [Bacillus sp. NRRL B-14911]
 gi|89084589|gb|EAR63734.1| RecA [Bacillus sp. NRRL B-14911]
          Length = 339

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/327 (62%), Positives = 262/327 (80%), Gaps = 2/327 (0%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           AL QI++ +GKG+IM+LG Q      I    SGSL LD+ALG+GG+PKGRIVEIYGPESS
Sbjct: 2   ALKQIEKQFGKGSIMKLGEQTD--RKISTSPSGSLALDVALGVGGYPKGRIVEIYGPESS 59

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTT+ALH IA+ Q  GG  AF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI +
Sbjct: 60  GKTTVALHAIAEVQANGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAE 119

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            LVRSGA+DI+VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I++S+ + +
Sbjct: 120 ALVRSGAIDILVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAINKSRTLAI 179

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR  ++K  + + GN+T++KVVKNK
Sbjct: 180 FINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNEMVGNKTKIKVVKNK 239

Query: 259 MASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLR 318
           +A PF+  E DIMYGEGIS  GE+ID+G +  IV KSG+W+S+  +RLGQGREN+K FL+
Sbjct: 240 VAPPFRVAEVDIMYGEGISKEGEIIDMGSELDIVQKSGSWYSYNEERLGQGRENAKQFLK 299

Query: 319 ENIEIAENIESLLRQNAGLVADSLLQE 345
           EN ++   I+  +R + GL  + LL E
Sbjct: 300 ENPDLRLTIQKQIRDHYGLDEEKLLDE 326


>gi|261206641|ref|ZP_05921339.1| recA [Enterococcus faecium TC 6]
 gi|289565002|ref|ZP_06445456.1| recombinase A [Enterococcus faecium D344SRF]
 gi|294614940|ref|ZP_06694831.1| protein RecA [Enterococcus faecium E1636]
 gi|260079134|gb|EEW66827.1| recA [Enterococcus faecium TC 6]
 gi|289163209|gb|EFD11055.1| recombinase A [Enterococcus faecium D344SRF]
 gi|291592226|gb|EFF23844.1| protein RecA [Enterococcus faecium E1636]
          Length = 348

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/327 (60%), Positives = 262/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ YGKG+IM+LG +  I + I  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKAALDAALKKIEKSYGKGSIMKLGEK--IDQQISTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+V+DSVAAL PRAEI+G+MG+S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E D+MYG GIS  GEL+D+ V+  IVDKSGAW+S+K  R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKIAEVDVMYGLGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+KI++  + E+   + +L+R   G+
Sbjct: 302 ENAKIYMANHPEMMAEVSALVRAAYGI 328


>gi|15924275|ref|NP_371809.1| recombinase A [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926868|ref|NP_374401.1| recombinase A [Staphylococcus aureus subsp. aureus N315]
 gi|21282897|ref|NP_645985.1| recombinase A [Staphylococcus aureus subsp. aureus MW2]
 gi|49483448|ref|YP_040672.1| recombinase A [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49486124|ref|YP_043345.1| recombinase A [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57651855|ref|YP_186161.1| recombinase A [Staphylococcus aureus subsp. aureus COL]
 gi|82750885|ref|YP_416626.1| recombinase A [Staphylococcus aureus RF122]
 gi|148267775|ref|YP_001246718.1| recombinase A [Staphylococcus aureus subsp. aureus JH9]
 gi|150393834|ref|YP_001316509.1| recombinase A [Staphylococcus aureus subsp. aureus JH1]
 gi|151221406|ref|YP_001332228.1| recombinase A [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156979606|ref|YP_001441865.1| recombinase A [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509451|ref|YP_001575110.1| recombinase A [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221142519|ref|ZP_03567012.1| recombinase A [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|228937974|ref|YP_499795.2| recombinase A [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|229558720|ref|YP_493875.2| recombinase A [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|253316422|ref|ZP_04839635.1| recombinase A [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253731904|ref|ZP_04866069.1| recombination protein RecA [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733477|ref|ZP_04867642.1| recombination protein RecA [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255006072|ref|ZP_05144673.2| recombinase A [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257425339|ref|ZP_05601764.1| RecA protein [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428000|ref|ZP_05604398.1| RecA protein [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430633|ref|ZP_05607015.1| recombination protein RecA [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433393|ref|ZP_05609751.1| recombinase A protein [Staphylococcus aureus subsp. aureus E1410]
 gi|257436235|ref|ZP_05612282.1| RecA protein [Staphylococcus aureus subsp. aureus M876]
 gi|257795659|ref|ZP_05644638.1| RecA protein [Staphylococcus aureus A9781]
 gi|258416062|ref|ZP_05682330.1| recombination protein RecA [Staphylococcus aureus A9763]
 gi|258421645|ref|ZP_05684569.1| RecA protein [Staphylococcus aureus A9719]
 gi|258423874|ref|ZP_05686759.1| RecA protein [Staphylococcus aureus A9635]
 gi|258434801|ref|ZP_05688875.1| recombinase A [Staphylococcus aureus A9299]
 gi|258444623|ref|ZP_05692952.1| recombination protein RecA [Staphylococcus aureus A8115]
 gi|258447544|ref|ZP_05695688.1| recombinase A [Staphylococcus aureus A6300]
 gi|258449386|ref|ZP_05697489.1| recombinase A [Staphylococcus aureus A6224]
 gi|258452584|ref|ZP_05700590.1| recombinase A [Staphylococcus aureus A5948]
 gi|258454765|ref|ZP_05702729.1| recombinase A protein [Staphylococcus aureus A5937]
 gi|262048173|ref|ZP_06021060.1| recombinase A [Staphylococcus aureus D30]
 gi|262051347|ref|ZP_06023570.1| recombinase A [Staphylococcus aureus 930918-3]
 gi|269202902|ref|YP_003282171.1| recombinase A [Staphylococcus aureus subsp. aureus ED98]
 gi|282892773|ref|ZP_06301008.1| RecA protein [Staphylococcus aureus A8117]
 gi|282903840|ref|ZP_06311728.1| RecA protein [Staphylococcus aureus subsp. aureus C160]
 gi|282905603|ref|ZP_06313458.1| RecA protein [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908579|ref|ZP_06316409.1| recombinase A protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910857|ref|ZP_06318660.1| recombinase A protein [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914062|ref|ZP_06321849.1| RecA protein [Staphylococcus aureus subsp. aureus M899]
 gi|282916545|ref|ZP_06324303.1| RecA protein [Staphylococcus aureus subsp. aureus D139]
 gi|282918984|ref|ZP_06326719.1| RecA protein [Staphylococcus aureus subsp. aureus C427]
 gi|282920529|ref|ZP_06328250.1| RecA protein [Staphylococcus aureus A9765]
 gi|282924107|ref|ZP_06331783.1| RecA protein [Staphylococcus aureus subsp. aureus C101]
 gi|282927627|ref|ZP_06335243.1| RecA protein [Staphylococcus aureus A10102]
 gi|283770349|ref|ZP_06343241.1| recombination protein RecA [Staphylococcus aureus subsp. aureus
           H19]
 gi|283958028|ref|ZP_06375479.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|284024278|ref|ZP_06378676.1| recombinase A [Staphylococcus aureus subsp. aureus 132]
 gi|293501094|ref|ZP_06666945.1| RecA protein [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510056|ref|ZP_06668764.1| RecA protein [Staphylococcus aureus subsp. aureus M809]
 gi|293526642|ref|ZP_06671327.1| RecA protein [Staphylococcus aureus subsp. aureus M1015]
 gi|294848281|ref|ZP_06789028.1| RecA protein [Staphylococcus aureus A9754]
 gi|295406222|ref|ZP_06816029.1| RecA protein [Staphylococcus aureus A8819]
 gi|295427772|ref|ZP_06820404.1| RecA protein [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296274843|ref|ZP_06857350.1| recombinase A [Staphylococcus aureus subsp. aureus MR1]
 gi|297208068|ref|ZP_06924499.1| recombination protein A [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297244450|ref|ZP_06928333.1| RecA protein [Staphylococcus aureus A8796]
 gi|297591270|ref|ZP_06949908.1| recombination protein A [Staphylococcus aureus subsp. aureus MN8]
 gi|300912150|ref|ZP_07129593.1| recombination protein A [Staphylococcus aureus subsp. aureus TCH70]
 gi|304381151|ref|ZP_07363804.1| recombination protein A [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|56749519|sp|Q6G9S8|RECA_STAAS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|56749566|sp|Q6GHF0|RECA_STAAR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|56753678|sp|P68844|RECA_STAAN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|56753679|sp|P68845|RECA_STAAU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|56753680|sp|P68846|RECA_STAAW RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|60392999|sp|P68843|RECA_STAAM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|71152037|sp|Q5HGE6|RECA_STAAC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123741033|sp|Q2YXN2|RECA_STAAB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166220684|sp|A7X1S3|RECA_STAA1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|172048869|sp|A6QGI4|RECA_STAAE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|189039611|sp|A6U1A4|RECA_STAA2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|189039612|sp|A5ISG9|RECA_STAA9 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|189039613|sp|A8Z1V6|RECA_STAAT RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|13183627|gb|AAK15276.1|AF317802_1 RecA [Staphylococcus aureus]
 gi|463285|gb|AAA50463.1| putative [Staphylococcus aureus]
 gi|13701085|dbj|BAB42380.1| RecA protein [Staphylococcus aureus subsp. aureus N315]
 gi|14247055|dbj|BAB57447.1| RecA protein [Staphylococcus aureus subsp. aureus Mu50]
 gi|21204336|dbj|BAB95033.1| RecA protein [Staphylococcus aureus subsp. aureus MW2]
 gi|49241577|emb|CAG40263.1| recombinase A [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49244567|emb|CAG42996.1| recombinase A [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57286041|gb|AAW38135.1| recA protein [Staphylococcus aureus subsp. aureus COL]
 gi|82656416|emb|CAI80836.1| recombinase A protein [Staphylococcus aureus RF122]
 gi|147740844|gb|ABQ49142.1| RecA protein [Staphylococcus aureus subsp. aureus JH9]
 gi|149946286|gb|ABR52222.1| recA protein [Staphylococcus aureus subsp. aureus JH1]
 gi|150374206|dbj|BAF67466.1| recombinase A [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156721741|dbj|BAF78158.1| RecA protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368260|gb|ABX29231.1| recombination protein RecA [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724314|gb|EES93043.1| recombination protein RecA [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728531|gb|EES97260.1| recombination protein RecA [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257271796|gb|EEV03934.1| RecA protein [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274841|gb|EEV06328.1| RecA protein [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278761|gb|EEV09380.1| recombination protein RecA [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281486|gb|EEV11623.1| recombinase A protein [Staphylococcus aureus subsp. aureus E1410]
 gi|257284517|gb|EEV14637.1| RecA protein [Staphylococcus aureus subsp. aureus M876]
 gi|257789631|gb|EEV27971.1| RecA protein [Staphylococcus aureus A9781]
 gi|257839210|gb|EEV63686.1| recombination protein RecA [Staphylococcus aureus A9763]
 gi|257842331|gb|EEV66756.1| RecA protein [Staphylococcus aureus A9719]
 gi|257845903|gb|EEV69932.1| RecA protein [Staphylococcus aureus A9635]
 gi|257849162|gb|EEV73144.1| recombinase A [Staphylococcus aureus A9299]
 gi|257850116|gb|EEV74069.1| recombination protein RecA [Staphylococcus aureus A8115]
 gi|257853735|gb|EEV76694.1| recombinase A [Staphylococcus aureus A6300]
 gi|257857374|gb|EEV80272.1| recombinase A [Staphylococcus aureus A6224]
 gi|257859802|gb|EEV82644.1| recombinase A [Staphylococcus aureus A5948]
 gi|257863148|gb|EEV85912.1| recombinase A protein [Staphylococcus aureus A5937]
 gi|259160722|gb|EEW45743.1| recombinase A [Staphylococcus aureus 930918-3]
 gi|259163739|gb|EEW48294.1| recombinase A [Staphylococcus aureus D30]
 gi|262075192|gb|ACY11165.1| recombinase A [Staphylococcus aureus subsp. aureus ED98]
 gi|269940776|emb|CBI49158.1| recombinase A [Staphylococcus aureus subsp. aureus TW20]
 gi|282314079|gb|EFB44471.1| RecA protein [Staphylococcus aureus subsp. aureus C101]
 gi|282316794|gb|EFB47168.1| RecA protein [Staphylococcus aureus subsp. aureus C427]
 gi|282319032|gb|EFB49384.1| RecA protein [Staphylococcus aureus subsp. aureus D139]
 gi|282322130|gb|EFB52454.1| RecA protein [Staphylococcus aureus subsp. aureus M899]
 gi|282325462|gb|EFB55771.1| recombinase A protein [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327641|gb|EFB57924.1| recombinase A protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282330895|gb|EFB60409.1| RecA protein [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282590630|gb|EFB95707.1| RecA protein [Staphylococcus aureus A10102]
 gi|282594191|gb|EFB99178.1| RecA protein [Staphylococcus aureus A9765]
 gi|282595458|gb|EFC00422.1| RecA protein [Staphylococcus aureus subsp. aureus C160]
 gi|282764770|gb|EFC04895.1| RecA protein [Staphylococcus aureus A8117]
 gi|283460496|gb|EFC07586.1| recombination protein RecA [Staphylococcus aureus subsp. aureus
           H19]
 gi|283470500|emb|CAQ49711.1| protein RecA [Staphylococcus aureus subsp. aureus ST398]
 gi|283790177|gb|EFC28994.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|285816967|gb|ADC37454.1| RecA protein [Staphylococcus aureus 04-02981]
 gi|290920714|gb|EFD97777.1| RecA protein [Staphylococcus aureus subsp. aureus M1015]
 gi|291096099|gb|EFE26360.1| RecA protein [Staphylococcus aureus subsp. aureus 58-424]
 gi|291467000|gb|EFF09518.1| RecA protein [Staphylococcus aureus subsp. aureus M809]
 gi|294825081|gb|EFG41503.1| RecA protein [Staphylococcus aureus A9754]
 gi|294968810|gb|EFG44832.1| RecA protein [Staphylococcus aureus A8819]
 gi|295128130|gb|EFG57764.1| RecA protein [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296887311|gb|EFH26213.1| recombination protein A [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297178480|gb|EFH37726.1| RecA protein [Staphylococcus aureus A8796]
 gi|297576156|gb|EFH94872.1| recombination protein A [Staphylococcus aureus subsp. aureus MN8]
 gi|298694577|gb|ADI97799.1| recombinase A protein [Staphylococcus aureus subsp. aureus ED133]
 gi|300886396|gb|EFK81598.1| recombination protein A [Staphylococcus aureus subsp. aureus TCH70]
 gi|302751107|gb|ADL65284.1| recombination protein RecA [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340134|gb|EFM06075.1| recombination protein A [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312438334|gb|ADQ77405.1| recombination protein A [Staphylococcus aureus subsp. aureus TCH60]
 gi|312829679|emb|CBX34521.1| protein RecA [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315131079|gb|EFT87063.1| recombinase A [Staphylococcus aureus subsp. aureus CGS03]
 gi|315194173|gb|EFU24566.1| recombinase A [Staphylococcus aureus subsp. aureus CGS00]
 gi|315198527|gb|EFU28856.1| recombinase A [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140898|gb|EFW32745.1| protein RecA [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144386|gb|EFW36152.1| protein RecA [Staphylococcus aureus subsp. aureus MRSA177]
 gi|323441067|gb|EGA98774.1| recombinase A [Staphylococcus aureus O11]
 gi|323443936|gb|EGB01547.1| recombinase A [Staphylococcus aureus O46]
 gi|329313955|gb|AEB88368.1| Protein recA [Staphylococcus aureus subsp. aureus T0131]
 gi|329727439|gb|EGG63895.1| RecA protein [Staphylococcus aureus subsp. aureus 21172]
 gi|329727797|gb|EGG64248.1| RecA protein [Staphylococcus aureus subsp. aureus 21189]
 gi|329733663|gb|EGG69991.1| RecA protein [Staphylococcus aureus subsp. aureus 21193]
          Length = 347

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/327 (61%), Positives = 259/327 (79%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+  +  +++ +GKGA+M+LG   +I   +   S+GS+ LD ALG+GG+PKGRI+
Sbjct: 4   DRQKALDTVIKNMEKSFGKGAVMKLGD--NIGRRVSTTSTGSVTLDNALGVGGYPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ Q  GG  AF+DAEHALD  YA+ LGVD+ NL +SQPD G
Sbjct: 62  EIYGPESSGKTTVALHAIAEVQSNGGVAAFIDAEHALDPEYAQALGVDIDNLYLSQPDHG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI +  VRSGAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 122 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S    +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T
Sbjct: 182 SKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G+R+GQG+
Sbjct: 242 KIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN K++L+EN +I E I+  LR+  G+
Sbjct: 302 ENVKMYLKENPQIKEEIDRKLREKLGI 328


>gi|325924502|ref|ZP_08186021.1| RecA protein [Xanthomonas gardneri ATCC 19865]
 gi|325544997|gb|EGD16332.1| RecA protein [Xanthomonas gardneri ATCC 19865]
          Length = 344

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/325 (65%), Positives = 274/325 (84%), Gaps = 4/325 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AALSQI++ +GKG++M++G +    E +EV+ +GSL LDIALGIGG PKGR+V
Sbjct: 4   NKKRALSAALSQIEKQFGKGSVMRMGDRA--IEAVEVIPTGSLMLDIALGIGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPE+SGKTTL L  IA+ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPEASGKTTLTLQAIAECQKKGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS +VDI+V+DSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSSSVDIVVVDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  ++VFINQ+R KIGVM    SPE TTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 182 KRSNTLVVFINQLRHKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELID+GV+A +V+K+GAW+S+  +R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVEKAGAWYSYGEERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333
           G++N++ +LR+N ++A  +E+ LR+
Sbjct: 302 GKDNARTYLRDNPQVAIKLEAELRE 326


>gi|167752109|ref|ZP_02424236.1| hypothetical protein ALIPUT_00351 [Alistipes putredinis DSM 17216]
 gi|167660350|gb|EDS04480.1| hypothetical protein ALIPUT_00351 [Alistipes putredinis DSM 17216]
          Length = 338

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 201/323 (62%), Positives = 265/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK K L A + +I++ +GKG+IM++ S  +    ++V+ +GS+ LD+ALG+GG+PKGR++
Sbjct: 10  DKLKVLNAVMEKIEKDFGKGSIMRMSS--AEVADVQVIPTGSITLDMALGVGGYPKGRVI 67

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA DS YA++LGVD+ NLLISQPD G
Sbjct: 68  EIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDSSYAQQLGVDVDNLLISQPDNG 127

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L+RS A+DIIVIDSVAALTP+AEIEG+MG++  G+QARLMSQALRKLTSSI
Sbjct: 128 EQALEIADSLIRSSAIDIIVIDSVAALTPKAEIEGEMGDAKMGLQARLMSQALRKLTSSI 187

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++K + +FINQ+R KIGV++G+PETTTGGNALKFY+SVR+DIRRV  IKD +   G +T
Sbjct: 188 SKTKTVCIFINQLRDKIGVVYGNPETTTGGNALKFYASVRIDIRRVSVIKDGEEQLGTRT 247

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK+ EFDIM+GEGIS  GE+IDLGV   I+ KSG+WFS+  +++GQGR
Sbjct: 248 RVKVVKNKVAPPFKKAEFDIMFGEGISKIGEIIDLGVDYGIIKKSGSWFSYGDRKIGQGR 307

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           ++ K  L+ +  +   +E+ +R+
Sbjct: 308 DSVKELLKNDEALRNEVEAKVRE 330


>gi|257886059|ref|ZP_05665712.1| recombinase A [Enterococcus faecium 1,231,501]
 gi|257821915|gb|EEV49045.1| recombinase A [Enterococcus faecium 1,231,501]
          Length = 349

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/327 (60%), Positives = 262/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ YGKG+IM+LG +  I + I  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKAALDAALKKIEKSYGKGSIMKLGEK--IDQQISTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+V+DSVAAL PRAEI+G+MG+S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E D+MYG GIS  GEL+D+ V+  IVDKSGAW+S+K  R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKIAEVDVMYGLGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+KI++  + E+   + +L+R   G+
Sbjct: 302 ENAKIYMANHPEMMAEVSALVRAAYGI 328


>gi|268680852|ref|YP_003305283.1| recA protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268618883|gb|ACZ13248.1| recA protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 347

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 201/324 (62%), Positives = 261/324 (80%), Gaps = 3/324 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALE A+ QI + +GKGA+++LG +  + E I  +S+GS+GLD+ALGIGG P+GRI+
Sbjct: 6   NKRKALELAIKQIDKAFGKGALVRLGDK--VVEPIAAISTGSIGLDLALGIGGIPQGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+L  IA++Q  G  CAFVDAEHALD  YA  LGVD++NLL+SQPD G
Sbjct: 64  EIYGPESSGKTTLSLQIIAEAQAKGSICAFVDAEHALDVKYAGNLGVDIENLLVSQPDFG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL+I + L RSGAVD+IV+DSVAALTP++EIEGDMG++  G+QARLMSQALRKLT+ +
Sbjct: 124 EQALDIVETLARSGAVDVIVVDSVAALTPKSEIEGDMGDTHVGLQARLMSQALRKLTAVV 183

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIG M +GSPETTTGGNALKFY+SVR+D+R++ ++K  +   GN+
Sbjct: 184 HKMNTTVIFINQIRMKIGTMGYGSPETTTGGNALKFYASVRIDVRKIATLKQGEEQIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KV+KNK+A PF+Q EFDIM+GEGIS  GE++D GVK  I+DKSGAWFS+   +LGQG
Sbjct: 244 VKAKVIKNKVAPPFRQAEFDIMFGEGISKEGEIVDYGVKLDIIDKSGAWFSYNETKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQ 333
           REN K FL+EN  +A  IE  ++Q
Sbjct: 304 RENVKAFLKENKALALEIEEKIKQ 327


>gi|69245406|ref|ZP_00603401.1| RecA bacterial DNA recombination protein [Enterococcus faecium DO]
 gi|257879817|ref|ZP_05659470.1| recombinase A [Enterococcus faecium 1,230,933]
 gi|257882543|ref|ZP_05662196.1| recombinase A [Enterococcus faecium 1,231,502]
 gi|257891658|ref|ZP_05671311.1| recombinase A [Enterococcus faecium 1,231,410]
 gi|257894133|ref|ZP_05673786.1| recombinase A [Enterococcus faecium 1,231,408]
 gi|258614242|ref|ZP_05712012.1| recombinase A [Enterococcus faecium DO]
 gi|260559490|ref|ZP_05831671.1| recA [Enterococcus faecium C68]
 gi|293563663|ref|ZP_06678104.1| protein RecA [Enterococcus faecium E1162]
 gi|293570073|ref|ZP_06681153.1| protein RecA [Enterococcus faecium E1071]
 gi|294617393|ref|ZP_06697028.1| protein RecA [Enterococcus faecium E1679]
 gi|294623664|ref|ZP_06702497.1| protein RecA [Enterococcus faecium U0317]
 gi|314939076|ref|ZP_07846337.1| protein RecA [Enterococcus faecium TX0133a04]
 gi|314943238|ref|ZP_07850022.1| protein RecA [Enterococcus faecium TX0133C]
 gi|314949346|ref|ZP_07852688.1| protein RecA [Enterococcus faecium TX0082]
 gi|314952877|ref|ZP_07855846.1| protein RecA [Enterococcus faecium TX0133A]
 gi|314993854|ref|ZP_07859189.1| protein RecA [Enterococcus faecium TX0133B]
 gi|314997699|ref|ZP_07862621.1| protein RecA [Enterococcus faecium TX0133a01]
 gi|76363327|sp|Q6KCJ6|RECA_ENTFC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|47678138|emb|CAF21832.1| RecA recombinase [Enterococcus faecium]
 gi|68195788|gb|EAN10224.1| RecA bacterial DNA recombination protein [Enterococcus faecium DO]
 gi|257814045|gb|EEV42803.1| recombinase A [Enterococcus faecium 1,230,933]
 gi|257818201|gb|EEV45529.1| recombinase A [Enterococcus faecium 1,231,502]
 gi|257828018|gb|EEV54644.1| recombinase A [Enterococcus faecium 1,231,410]
 gi|257830512|gb|EEV57119.1| recombinase A [Enterococcus faecium 1,231,408]
 gi|260074589|gb|EEW62910.1| recA [Enterococcus faecium C68]
 gi|291587445|gb|EFF19329.1| protein RecA [Enterococcus faecium E1071]
 gi|291596341|gb|EFF27599.1| protein RecA [Enterococcus faecium E1679]
 gi|291596879|gb|EFF28097.1| protein RecA [Enterococcus faecium U0317]
 gi|291604347|gb|EFF33840.1| protein RecA [Enterococcus faecium E1162]
 gi|313588275|gb|EFR67120.1| protein RecA [Enterococcus faecium TX0133a01]
 gi|313591707|gb|EFR70552.1| protein RecA [Enterococcus faecium TX0133B]
 gi|313595031|gb|EFR73876.1| protein RecA [Enterococcus faecium TX0133A]
 gi|313598042|gb|EFR76887.1| protein RecA [Enterococcus faecium TX0133C]
 gi|313641610|gb|EFS06190.1| protein RecA [Enterococcus faecium TX0133a04]
 gi|313644295|gb|EFS08875.1| protein RecA [Enterococcus faecium TX0082]
          Length = 349

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/327 (60%), Positives = 262/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ YGKG+IM+LG +  I + I  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKAALDAALKKIEKSYGKGSIMKLGEK--IDQQISTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+V+DSVAAL PRAEI+G+MG+S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E D+MYG GIS  GEL+D+ V+  IVDKSGAW+S+K  R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKIAEVDVMYGLGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+KI++  + E+   + +L+R   G+
Sbjct: 302 ENAKIYMANHPEMMAEVSALVRAAYGI 328


>gi|313901810|ref|ZP_07835233.1| RecA protein [Thermaerobacter subterraneus DSM 13965]
 gi|313467930|gb|EFR63421.1| RecA protein [Thermaerobacter subterraneus DSM 13965]
          Length = 340

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 195/325 (60%), Positives = 267/325 (82%), Gaps = 1/325 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           ++++ +ALE AL+QI++ +GKG+IM++G + S    +EV+ +GSL LDIALG+GG P+GR
Sbjct: 1   MIERERALEMALNQIEKQFGKGSIMRMG-EASARLNVEVIPTGSLALDIALGVGGMPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EI+GPE+SGKTT+ALH +A +Q++GG  AF+DAEHALD +YA  LGVD+ NLLISQPD
Sbjct: 60  IIEIFGPEASGKTTVALHVVASAQRSGGVAAFIDAEHALDPVYAENLGVDINNLLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVD+IVIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKLT 
Sbjct: 120 TGEQALEIAEALVRSGAVDVIVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++S+  L+FINQ+R K+GVMFG+PE T GG ALKFY+SVRLD+RRV ++K    + G 
Sbjct: 180 AIAKSRTCLIFINQIREKVGVMFGNPEVTPGGRALKFYASVRLDVRRVETLKQGGEMIGI 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + R KVVKNK+A PF+Q EFD++YG+GIS  G+L+D+  +  I++K+GAW+S+   R+GQ
Sbjct: 240 RARAKVVKNKVAPPFRQAEFDLLYGKGISREGDLLDIATQHGIIEKAGAWYSYGDTRIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333
           GREN++ +L ++ E+A+ IE  LR+
Sbjct: 300 GRENAREYLVQHPEVADAIERRLRE 324


>gi|293572674|ref|ZP_06683642.1| protein RecA [Enterococcus faecium E980]
 gi|291607260|gb|EFF36614.1| protein RecA [Enterococcus faecium E980]
          Length = 349

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/327 (60%), Positives = 262/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ YGKG+IM+LG +  I + I  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKAALDAALKKIEKSYGKGSIMKLGEK--IDQQISTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+V+DSVAAL PRAEI+G+MG+S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E D+MYG GIS  GEL+D+ V+  IVDKSGAW+S+K  R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKIAEVDVMYGLGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+KI++  + E+   + +L+R   G+
Sbjct: 302 ENAKIYMANHPEMMAEVSALVRAAYGI 328


>gi|227552708|ref|ZP_03982757.1| recombination protein A [Enterococcus faecium TX1330]
 gi|257888676|ref|ZP_05668329.1| recombinase A [Enterococcus faecium 1,141,733]
 gi|257897366|ref|ZP_05677019.1| recombinase A [Enterococcus faecium Com12]
 gi|257899928|ref|ZP_05679581.1| recombinase A [Enterococcus faecium Com15]
 gi|293378872|ref|ZP_06625027.1| protein RecA [Enterococcus faecium PC4.1]
 gi|227178171|gb|EEI59143.1| recombination protein A [Enterococcus faecium TX1330]
 gi|257824730|gb|EEV51662.1| recombinase A [Enterococcus faecium 1,141,733]
 gi|257833931|gb|EEV60352.1| recombinase A [Enterococcus faecium Com12]
 gi|257837840|gb|EEV62914.1| recombinase A [Enterococcus faecium Com15]
 gi|292642413|gb|EFF60568.1| protein RecA [Enterococcus faecium PC4.1]
          Length = 348

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/327 (60%), Positives = 262/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ YGKG+IM+LG +  I + I  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKAALDAALKKIEKSYGKGSIMKLGEK--IDQQISTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+V+DSVAAL PRAEI+G+MG+S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E D+MYG GIS  GEL+D+ V+  IVDKSGAW+S+K  R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKIAEVDVMYGLGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+KI++  + E+   + +L+R   G+
Sbjct: 302 ENAKIYMANHPEMMAEVSALVRAAYGI 328


>gi|307720028|ref|YP_003891168.1| RecA protein [Sulfurimonas autotrophica DSM 16294]
 gi|306978121|gb|ADN08156.1| RecA protein [Sulfurimonas autotrophica DSM 16294]
          Length = 345

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 201/328 (61%), Positives = 262/328 (79%), Gaps = 3/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+ A+ QI + +GKGA+M+LG +  +   I+ +S+GSLGLD+ALGIGG P+GR+V
Sbjct: 4   NKQKSLDLAMKQIDKAFGKGALMRLGDKDIV--PIQSISTGSLGLDLALGIGGVPQGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLAL   A+ QK GG CAF+DAEHALD +YA+ LGVD+ NLL+SQPD G
Sbjct: 62  EIYGPESSGKTTLALQITAECQKNGGVCAFIDAEHALDVVYAKNLGVDIDNLLVSQPDYG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL+I + + RSGA+D+IVIDSVAALTP+ E+EG+M +   G+QARLMS+ALRKLT  +
Sbjct: 122 EQALDIVETIARSGAIDLIVIDSVAALTPKVELEGEMNDQQVGVQARLMSKALRKLTGVL 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           S+  C ++FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+D+RR+ S+K  +S  GN+
Sbjct: 182 SKMNCTVIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDVRRIASLKQGESQIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KV+KNK+A PF+Q EFDIM+GEGIS  GEL+D GVK  IVDKSGAWFS+   +LGQG
Sbjct: 242 VKAKVIKNKVAPPFRQAEFDIMFGEGISKEGELVDYGVKLDIVDKSGAWFSYGETKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           REN K   ++  E+A  IE  ++Q  G+
Sbjct: 302 RENVKAKFKDEPELASEIEEKIKQAMGM 329


>gi|225936944|emb|CAJ82768.1| recA recombinase [Enterococcus canis]
          Length = 346

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/327 (61%), Positives = 263/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ +GKG+IM+LG +  + + I V+ SGSL LD+ALG+GG+P+GRIV
Sbjct: 4   DRKVALDAALKKIEKNFGKGSIMKLGEK--VDQQISVIPSGSLALDVALGVGGYPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGA+DI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAIDIVVIDSVAALVPRAEIEGEMGDTHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY++VRL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKQGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DI YG+GIS  GEL+D+ V+  IVDKSGAW+ +K +R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKIAEVDIKYGQGISQEGELLDMAVEKDIVDKSGAWYGYKEERIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K ++ ++ E+   I  L+R   G+
Sbjct: 302 ENAKTYIHDHPEMMAEISHLVRDAYGI 328


>gi|317484484|ref|ZP_07943394.1| recA bacterial DNA recombination protein [Bilophila wadsworthia
           3_1_6]
 gi|316924260|gb|EFV45436.1| recA bacterial DNA recombination protein [Bilophila wadsworthia
           3_1_6]
          Length = 365

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/353 (59%), Positives = 267/353 (75%), Gaps = 5/353 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + +AL+ AL  I+R +G+GA+M+L     +   + V+ +GS+G+D+ALGIGG PKGR+ E
Sbjct: 13  RQEALKTALETIERKFGQGAVMKLSD--DVHVKVPVIPTGSIGVDLALGIGGIPKGRVTE 70

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA+ QK GGT AF+DAEHALD  YAR+LGV    LLISQPD GE
Sbjct: 71  IYGPESSGKTTLTLHVIAECQKLGGTAAFIDAEHALDVTYARRLGVKTDELLISQPDHGE 130

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DMLVRSGAVD++VIDSVAAL P+ E+EG MGE+  G  ARLMS ALRKLT +I 
Sbjct: 131 QALEIADMLVRSGAVDLVVIDSVAALIPQTELEGAMGETQVGGHARLMSHALRKLTGTIH 190

Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +S+  ++FINQ+RMKIGV  +GSPETTTGGNALKFYSSVRLDIR++ ++KDK+   G+ T
Sbjct: 191 KSRTAVIFINQIRMKIGVTGYGSPETTTGGNALKFYSSVRLDIRKIQTLKDKEEAYGSLT 250

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PF++ +FDI++G GIS  GELIDLGV A IVDKSGAWF+F  ++LGQG+
Sbjct: 251 RVKVVKNKMAPPFREAKFDIIWGTGISRSGELIDLGVDAGIVDKSGAWFAFGAEKLGQGK 310

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP--AINTKDDADKDDTDN 361
           E  +  L E  E+   IES L ++ G+    ++  P   +   ++A  DD D+
Sbjct: 311 EKVRALLDETPELRNAIESQLIEHLGMNPRPVVHAPEETLPDPENAPVDDMDD 363


>gi|313619006|gb|EFR90835.1| protein RecA [Listeria innocua FSL S4-378]
          Length = 366

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 196/326 (60%), Positives = 261/326 (80%), Gaps = 2/326 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N+ D+  AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+G
Sbjct: 18  NVNDRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRG 75

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+E+YGPESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQP
Sbjct: 76  RIIEVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQP 135

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+
Sbjct: 136 DTGEQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLS 195

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
             I++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR   +K    + G
Sbjct: 196 GVINKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMG 255

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+T++KVVKNK+A PF+  E DIMYGEGIS  GEL+D+  +  +++KSG+W+S+K +R+G
Sbjct: 256 NKTKIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIG 315

Query: 308 QGRENSKIFLRENIEIAENIESLLRQ 333
           QGREN+K +L+E+ +I + I   +R+
Sbjct: 316 QGRENAKQYLKEHTDIRDEISKRVRE 341


>gi|327440979|dbj|BAK17344.1| RecA/RadA recombinase [Solibacillus silvestris StLB046]
          Length = 358

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/327 (61%), Positives = 260/327 (79%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG++M+LG   +    +E  SSGS+ +D ALGIGG+P+GRIV
Sbjct: 3   DRKAALDMALKQIEKQFGKGSVMKLGENSN--RHMETTSSGSIAIDAALGIGGYPRGRIV 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ LH IA+ Q  GGT AF+DAEHALD +YA+KLGV++  LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVTLHAIAEIQANGGTAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+  I
Sbjct: 121 EQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLSGVI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++S  + +FINQ+R KIGVMFG+PETTTGG ALKFYSS+RL++RR  +IK    I GN+T
Sbjct: 181 NKSNTLAIFINQVREKIGVMFGNPETTTGGRALKFYSSIRLEVRRGEAIKQGTEIIGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYGEGIS  GE++D+G +  I+ KSG+W+S+  +R+GQGR
Sbjct: 241 KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIVDIGAELDIIQKSGSWYSYNSERIGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN K F +EN  I E +   +RQ+ G+
Sbjct: 301 ENVKQFFKENPAIKEEVTEKIRQHFGI 327


>gi|162769933|emb|CAP58282.1| DNA recombinase [Burkholderia latens]
          Length = 286

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 197/275 (71%), Positives = 242/275 (88%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLI
Sbjct: 1   PRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLI 60

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 61  SQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 120

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D 
Sbjct: 121 KLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDE 180

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+
Sbjct: 181 VIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGE 240

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           ++GQG++N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 241 KIGQGKDNAREFLRENPEIAREIENRIRESLGVVA 275


>gi|261854981|ref|YP_003262264.1| RecA protein [Halothiobacillus neapolitanus c2]
 gi|261835450|gb|ACX95217.1| RecA protein [Halothiobacillus neapolitanus c2]
          Length = 349

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/322 (65%), Positives = 268/322 (83%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL AALSQI+R +GKGA+M++     +   + VVS+GS+ LD ALGIGG P+GR+V
Sbjct: 4   NRKKALTAALSQIERQFGKGAVMRMNDTAGV--DVPVVSTGSIALDAALGIGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QKTGG CAFVDAEHALD  YA+KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAQAQKTGGVCAFVDAEHALDPTYAQKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSGAVD++V+DSVAAL P+AEIEG+MG++  G+QARLMSQALRKLT +I
Sbjct: 122 EQALEITDMLVRSGAVDVVVVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGV +GSPETTTGGNALKFY+SVRLDIRRVG++K  + I GNQT
Sbjct: 182 KRTNCMVIFINQIRMKIGVSYGSPETTTGGNALKFYASVRLDIRRVGAVKKGEEIIGNQT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNKMA PFK V+ DI+YGEGIS   ELID+     ++ K+GAW+S    RLGQG+
Sbjct: 242 RIKVVKNKMAPPFKVVDVDILYGEGISRLMELIDMATTHGLIQKAGAWYSCGDIRLGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           +N++ +  E+ E+A++IE+ LR
Sbjct: 302 DNARQYFVEHPELADDIEAKLR 323


>gi|289434680|ref|YP_003464552.1| RecA protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289170924|emb|CBH27466.1| RecA protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 348

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 196/323 (60%), Positives = 260/323 (80%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  ALE AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+
Sbjct: 3   DRQAALEQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 121 EQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR   +K    + GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYGEGIS  GEL+D+  +  +++KSG+W+S+K +R+GQGR
Sbjct: 241 KIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           EN+K +L+E+ +I + I   +R+
Sbjct: 301 ENAKQYLKEHTDIRDEISKRVRE 323


>gi|152965460|ref|YP_001361244.1| recA protein [Kineococcus radiotolerans SRS30216]
 gi|189039597|sp|A6W841|RECA_KINRD RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|151359977|gb|ABS02980.1| recA protein [Kineococcus radiotolerans SRS30216]
          Length = 348

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 208/329 (63%), Positives = 269/329 (81%), Gaps = 2/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+AAL+ I + +GKG++M+LG +  +   IEV+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 6   DREKALDAALAAIDKNFGKGSVMRLGDE--VRPPIEVIPTGSISLDVALGIGGLPRGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +QK GG  AF+DAEHALD  YA KLGVD   LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVASAQKAGGIAAFIDAEHALDPDYAAKLGVDTDALLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGALDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD  +  GN+T
Sbjct: 184 NHSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTNPVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG+GIS  G LIDLGV+   V KSGAW++++G +LGQG+
Sbjct: 244 RVKVVKNKVSPPFKQAEFDIIYGQGISREGGLIDLGVEHGFVRKSGAWYTYEGDQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           EN++ FLR+N ++ + IE  +++  G+ A
Sbjct: 304 ENARAFLRDNPDLGDEIEKRIKEKLGIGA 332


>gi|313896334|ref|ZP_07829887.1| RecA protein [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320529149|ref|ZP_08030241.1| protein RecA [Selenomonas artemidis F0399]
 gi|312975133|gb|EFR40595.1| RecA protein [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320138779|gb|EFW30669.1| protein RecA [Selenomonas artemidis F0399]
          Length = 360

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/324 (62%), Positives = 259/324 (79%), Gaps = 3/324 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLG-SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           + +ALE AL QI++ +GKGAIM+LG +Q ++   IEV+S+G L LDIALG+GG P+GRI+
Sbjct: 17  REEALEQALKQIEKAHGKGAIMRLGEAQANM--NIEVISTGILPLDIALGVGGIPRGRII 74

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ LH IA++QK GG  AF+DAEHALD  YA++LGV+++ LLISQPDTG
Sbjct: 75  EVYGPESSGKTTVTLHMIAEAQKAGGVAAFIDAEHALDPEYAKRLGVNIEELLISQPDTG 134

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVDIIV+DSVAAL P++EI+ DMG S  G+QARLMSQA+RKLT  I
Sbjct: 135 EQALEIVDALVRSGAVDIIVVDSVAALVPKSEIDEDMGSSHVGLQARLMSQAMRKLTGII 194

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+++ + +FINQ+R KIGV +G+PETTTGG ALKFY+SVR+D+RR  +IK      GN+T
Sbjct: 195 SKTRTVAIFINQLREKIGVTYGNPETTTGGRALKFYASVRIDVRRSDTIKQGSDSLGNRT 254

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R K+VKNK+A PFK  EFDIMYGEG+S  G +ID+GV   IVDKSGAW+S++G RLGQG+
Sbjct: 255 RAKIVKNKVAPPFKTAEFDIMYGEGVSRIGSIIDMGVDLDIVDKSGAWYSYEGTRLGQGK 314

Query: 311 ENSKIFLRENIEIAENIESLLRQN 334
           EN+K  L    E+   IE  +R+ 
Sbjct: 315 ENAKAALESKPELIAEIEGKIREQ 338


>gi|47678154|emb|CAF21840.1| RecA recombinase [Enterococcus saccharolyticus]
          Length = 346

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 198/327 (60%), Positives = 261/327 (79%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ +GKGA+M+LG +    + I  + SGSL LD+ALG+GGFP+GRIV
Sbjct: 4   DRKAALDAALKKIEKNFGKGAVMKLGEKAD--QRISTIPSGSLALDVALGVGGFPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A+ QK GGT AF+DAEHALD  YA KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAVAEVQKQGGTAAFIDAEHALDPQYAEKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+VIDSVAAL PRAEI+G+MG++  G+QARLMSQALRKL+ +I
Sbjct: 122 EQGLEIADALVSSGAVDIVVIDSVAALVPRAEIDGEMGDAHVGLQARLMSQALRKLSGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY++VRL++RR   +K    I GN+T
Sbjct: 182 NKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKSGTDIIGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYGEGIS  GEL+D+  +  I+DKSGAW+S+KG R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGEGISQVGELLDMAAEKDIIDKSGAWYSYKGDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN K +++++ E+   + + +R   G+
Sbjct: 302 ENVKNYMKDHPEMVAEVSARVRDAYGI 328


>gi|295101445|emb|CBK98990.1| RecA protein [Faecalibacterium prausnitzii L2-6]
          Length = 395

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 201/325 (61%), Positives = 260/325 (80%), Gaps = 3/325 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K  AL  AL+QI++ +GKGAIM+LG   ++   ++ +S+GSLGLD+ALG+GG P+GRI+E
Sbjct: 21  KKDALATALAQIEKQFGKGAIMKLGDNTAM--QVDAISTGSLGLDLALGVGGVPRGRIIE 78

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           ++GPESSGKTTLALH +A++QK GG  AF+D EHALD  YA  LGV++  LL+SQPDTGE
Sbjct: 79  VFGPESSGKTTLALHILAEAQKKGGEVAFIDVEHALDPAYASALGVNIDELLVSQPDTGE 138

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QA+EI + LVRSGA+D IV+DSVAA+ PRAEIEG+MG+S  G+QARLMSQA+RKLTS I 
Sbjct: 139 QAMEICEALVRSGAIDAIVVDSVAAMVPRAEIEGEMGDSHVGLQARLMSQAMRKLTSVIG 198

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQT 250
           ++  + VFINQ+R K+G+++G+PE TTGG ALK+YSSVR+DIRRV  +KD      GN T
Sbjct: 199 KTNTVCVFINQLREKVGIVYGNPEVTTGGRALKYYSSVRIDIRRVEGLKDSSGQFIGNHT 258

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R K+VKNK+A PF++ EFDIM+GEGIS   ELID+GVK  IV KSGAWF++   RLGQGR
Sbjct: 259 RAKIVKNKVAPPFREAEFDIMFGEGISKMSELIDVGVKLGIVQKSGAWFNYGDIRLGQGR 318

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
           +N+K FL++N EIA +IE  +R NA
Sbjct: 319 DNAKQFLKDNPEIANDIEGQIRANA 343


>gi|118474319|ref|YP_891406.1| recombinase A [Campylobacter fetus subsp. fetus 82-40]
 gi|3219847|sp|O30884|RECA_CAMFE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166199601|sp|A0RMH3|RECA_CAMFF RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|2642184|gb|AAB86923.1| recombinase [Campylobacter fetus]
 gi|118413545|gb|ABK81965.1| protein RecA [Campylobacter fetus subsp. fetus 82-40]
          Length = 345

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/327 (66%), Positives = 261/327 (79%), Gaps = 3/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+ AL QI + +GKG +++LG +    E I+ +SSGS+GLDIALGIGG PKGRIV
Sbjct: 4   NKKKSLDLALKQIDKAFGKGTVLRLGDKE--IEPIDSISSGSIGLDIALGIGGVPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+SQK GG CAFVDAEHALD  YA+ LGVD  NL ISQPD G
Sbjct: 62  EIYGPESSGKTTLTLHLIAESQKVGGVCAFVDAEHALDVKYAKNLGVDTDNLYISQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL+I + L RSGAVD+IVIDSVAALTP++EIEGDMG+   G+QARLMSQALRKLT  +
Sbjct: 122 EQALDIVETLARSGAVDLIVIDSVAALTPKSEIEGDMGDQHVGLQARLMSQALRKLTGVV 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    +VFINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R++ ++K  D   GN+
Sbjct: 182 HKMGTTVVFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKIATLKQSDEPIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PF+Q EFDIM+GEGIS  GE+ID GVK  I+DKSGAWFS+   +LGQG
Sbjct: 242 VKVKVVKNKVAPPFRQAEFDIMFGEGISKEGEIIDYGVKLDIIDKSGAWFSYDNSKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336
           RENSK FL+EN  IA+ I   +R N G
Sbjct: 302 RENSKAFLKENKAIADEITEKIRANMG 328


>gi|295396971|ref|ZP_06807092.1| recombination protein A [Aerococcus viridans ATCC 11563]
 gi|294974788|gb|EFG50494.1| recombination protein A [Aerococcus viridans ATCC 11563]
          Length = 363

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 206/349 (59%), Positives = 271/349 (77%), Gaps = 2/349 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  ++ KAL+ A+ +I+R +GKG+IM++G +G     I  V +GSL LDI+LG+GG+P+G
Sbjct: 6   NDSNRQKALDDAMKKIERNFGKGSIMKMGERGDTR--ISTVPTGSLTLDISLGVGGYPRG 63

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+E+YGPESSGKTT++LH IA+ QK GG  AF+DAE+ALD  YA KLGV++  LL+SQP
Sbjct: 64  RIIEVYGPESSGKTTVSLHAIAEVQKRGGIAAFIDAENALDPEYAAKLGVNVDELLLSQP 123

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQ LEI D LV SGA+DIIV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL+
Sbjct: 124 DTGEQGLEIADALVSSGAIDIIVVDSVAALVPRAEIEGEMGDSHIGLQARLMSQALRKLS 183

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            +I+++K I +FINQ+R K+GVMFGSPETT GG ALKFYS+VRL++RR   IK+  S  G
Sbjct: 184 GTINKTKTIAIFINQIREKVGVMFGSPETTPGGRALKFYSTVRLEVRRGEQIKESGSAIG 243

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+T++K+VKNK+A PFK  E DIMYGEGIS  GEL+DL  +  I++KSG+W+S+   R+G
Sbjct: 244 NRTKIKIVKNKVAPPFKVAEVDIMYGEGISQEGELVDLAAELDIINKSGSWYSYGEDRIG 303

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           QGREN+K FLREN EI E I+  +RQ+ G   +  L E  ++  +  D+
Sbjct: 304 QGRENAKQFLRENPEIRETIDGQVRQHFGFGQNGKLSEEELDALEANDQ 352


>gi|47571264|gb|AAT35789.1| RecA [Mycobacterium asiaticum]
          Length = 307

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 195/307 (63%), Positives = 256/307 (83%), Gaps = 2/307 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 3   DREKALELAMAQIEKSYGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVI 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 61  EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 121 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R  IGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+T
Sbjct: 181 NNSGTTAIFINQLRGTIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNRT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV    + KSG+WF+++G++LGQG+
Sbjct: 241 RVKVVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVDQGFIRKSGSWFTYEGEQLGQGK 300

Query: 311 ENSKIFL 317
           EN++ FL
Sbjct: 301 ENARNFL 307


>gi|15611211|ref|NP_222862.1| recombinase A [Helicobacter pylori J99]
 gi|254778869|ref|YP_003056974.1| recombinase A [Helicobacter pylori B38]
 gi|10720255|sp|Q9ZMS7|RECA_HELPJ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|4154654|gb|AAD05722.1| RECA PROTEIN [Helicobacter pylori J99]
 gi|254000780|emb|CAX28704.1| Protein recA (Recombinase A) [Helicobacter pylori B38]
 gi|317013573|gb|ADU81009.1| recombinase A [Helicobacter pylori Gambia94/24]
          Length = 347

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/327 (60%), Positives = 263/327 (80%), Gaps = 3/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+  A+ QI +V+GKGA+++LG +    E I+ +S+GSLGLD+ALGIGG PKGRI+
Sbjct: 6   DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDAISTGSLGLDLALGIGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQP TG
Sbjct: 64  EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  +
Sbjct: 124 EEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    L+FINQ+RMKIG+  +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+
Sbjct: 184 HKMNTTLIFINQIRMKIGMTGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF++ EFDIM+GEGIS  GE+ID GVK  IVDKSGAW S++ ++LGQG
Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336
           REN+K  L+E+  +A+ I   ++++ G
Sbjct: 304 RENAKALLKEDKALADEITLKIKESIG 330


>gi|315303074|ref|ZP_07873776.1| protein RecA [Listeria ivanovii FSL F6-596]
 gi|38258435|sp|Q83TH2|RECA_LISIV RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|30265993|gb|AAN15812.1| RecA [Listeria ivanovii]
 gi|30265995|gb|AAN15813.1| RecA [Listeria ivanovii]
 gi|313628555|gb|EFR96986.1| protein RecA [Listeria ivanovii FSL F6-596]
          Length = 348

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/342 (58%), Positives = 268/342 (78%), Gaps = 4/342 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+
Sbjct: 3   DRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 121 EQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR   +K    + GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYGEGIS  GEL+D+  +  +++KSG+W+S+K +R+GQGR
Sbjct: 241 KIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           EN+K +L+E+ +I + I   +R+   +  D   +EP   T++
Sbjct: 301 ENAKQYLKEHTDIRDEISKRVREEYEI--DGSNKEPLAETEE 340


>gi|317121901|ref|YP_004101904.1| RecA protein [Thermaerobacter marianensis DSM 12885]
 gi|315591881|gb|ADU51177.1| RecA protein [Thermaerobacter marianensis DSM 12885]
          Length = 340

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 196/325 (60%), Positives = 264/325 (81%), Gaps = 1/325 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           ++++ +ALE ALSQI++ +GKG+IM++G   S    +EV+ +GSL LDIALG+GG P+GR
Sbjct: 1   MIERERALEIALSQIEKQFGKGSIMRMGEASSRLN-VEVIPTGSLALDIALGVGGMPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EI+GPE+SGKTT+ALH  A +Q+ GG  AF+DAEHALD +YA  LGVD+ NLLISQPD
Sbjct: 60  IIEIFGPEASGKTTVALHVAASAQRAGGVAAFIDAEHALDPVYAENLGVDINNLLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVD+IVIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKLT 
Sbjct: 120 TGEQALEIAEALVRSGAVDVIVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++S+  L+FINQ+R K+GVMFG+PE T GG ALKFY+SVRLD+RRV ++K    + G 
Sbjct: 180 AIAKSRTCLIFINQIREKVGVMFGNPEVTPGGRALKFYASVRLDVRRVETLKQGGEMIGI 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + R KVVKNK+A PF+Q EFD++YG+GIS  G+L+D+  +  I++KSGAW+S+   R+GQ
Sbjct: 240 RARAKVVKNKVAPPFRQAEFDLIYGKGISREGDLLDIATQHGIIEKSGAWYSYGDTRIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333
           GREN++ +L ++ E+A+ IE  +R+
Sbjct: 300 GRENAREYLVQHPEVADAIEQRVRE 324


>gi|197124077|ref|YP_002136028.1| recA protein [Anaeromyxobacter sp. K]
 gi|196173926|gb|ACG74899.1| recA protein [Anaeromyxobacter sp. K]
          Length = 343

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 198/313 (63%), Positives = 261/313 (83%), Gaps = 1/313 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
            + +++KAL  A++ I++ +GKG+IM+L ++ +    + VV SGS+GLD+ALG+GG P+G
Sbjct: 3   KLAERAKALGQAVATIEKAFGKGSIMRL-AESAEPAPVPVVPSGSIGLDLALGVGGLPRG 61

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R+VEI+GPESSGKTTLALH IA++QK GG  AF+DAEHALD  YARKLGV+L  LL+SQP
Sbjct: 62  RVVEIFGPESSGKTTLALHAIAEAQKAGGVAAFIDAEHALDVGYARKLGVNLAELLVSQP 121

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI + LVRSGA D+IV+DSVAAL P+AEIEG+MG++  G+QARLMSQALRKLT
Sbjct: 122 DTGEQALEIAEQLVRSGACDVIVVDSVAALVPKAEIEGEMGDAHMGVQARLMSQALRKLT 181

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
             +SR++ ++VFINQ+RMKIGV+FG+PETTTGG+ALKFY+SVR+DIRR+G +K+ D++ G
Sbjct: 182 GVVSRNQTLVVFINQIRMKIGVVFGNPETTTGGHALKFYASVRMDIRRIGQVKEGDAVVG 241

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           ++TRVKVVKNK+A PF++ EFDI YG G+  FGE +DLGV+   V+KSGA FS  G+R+G
Sbjct: 242 SRTRVKVVKNKVAPPFREAEFDIRYGVGVDRFGEAVDLGVERGAVEKSGAHFSMDGERIG 301

Query: 308 QGRENSKIFLREN 320
           QGRE +  +LR N
Sbjct: 302 QGRERAAEWLRAN 314


>gi|47571282|gb|AAT35798.1| RecA [Mycobacterium szulgai]
          Length = 309

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 194/306 (63%), Positives = 256/306 (83%), Gaps = 2/306 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 6   DREKALELAMAQIEKSYGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA++LGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKRLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+T
Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK++ PFKQ EFDI+YG+GIS  G LID+GV    + KSGAWF+++G++LGQG+
Sbjct: 244 RVKIVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVDQGFIRKSGAWFTYEGEQLGQGK 303

Query: 311 ENSKIF 316
           EN++ F
Sbjct: 304 ENARNF 309


>gi|289550923|ref|YP_003471827.1| RecA protein [Staphylococcus lugdunensis HKU09-01]
 gi|289180455|gb|ADC87700.1| RecA protein [Staphylococcus lugdunensis HKU09-01]
          Length = 348

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 201/327 (61%), Positives = 257/327 (78%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+  +  +++ +GKGA+M+LG        +  VS+GS+ LD ALG+GG+PKGRI+
Sbjct: 4   DRQKALDTVIKNMEKSFGKGAVMKLGDNKG--RRVSSVSTGSVTLDNALGVGGYPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD  YA  LGVD+ NL +SQPD G
Sbjct: 62  EIYGPESSGKTTVALHAIAEVQKNGGIAAFIDAEHALDPEYAAALGVDIDNLYLSQPDHG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI +  VRSGAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 122 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S    +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T
Sbjct: 182 SKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G R+GQG+
Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGQGISKEGELIDLGVEHDIVDKSGAWYSYNGDRMGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN K +L+EN E+ ++I+  LR+  G+
Sbjct: 302 ENVKTYLKENPEVRDDIDRKLREKLGI 328


>gi|157284497|gb|ABV31096.1| RecA [Vibrio cholerae O1]
          Length = 337

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 196/311 (63%), Positives = 257/311 (82%), Gaps = 2/311 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG   ++   +E +S+GSL LD A G GG P GRIVEI+GPESSGKTT
Sbjct: 3   IEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDSAWGAGGLPMGRIVEIFGPESSGKTT 60

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L R
Sbjct: 61  LTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALAR 120

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 121 SGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 180

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+P
Sbjct: 181 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAP 240

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+ N+  +L+EN E
Sbjct: 241 FKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKENPE 300

Query: 323 IAENIESLLRQ 333
           IA+ ++  LR+
Sbjct: 301 IAKTLDKKLRE 311


>gi|47678158|emb|CAF21842.1| RecA recombinase [Enterococcus sulfureus]
          Length = 344

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 195/327 (59%), Positives = 262/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ +GKGA+M+LG +  + + I  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKAALDAALKKIEKNFGKGAVMKLGEK--VDQQISTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA  LGV++ +LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPKYASNLGVNIDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVD++V+DSVAAL PRAEI+G+MG S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDMVVVDSVAALVPRAEIDGEMGASHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATIRLEVRRAEQLKSGTDIIGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++K+VKNK+A PF+  E DIMYGEGIS  GEL+D+  +  I+DKSGAW+S+KG R+GQGR
Sbjct: 242 KIKIVKNKVAPPFRIAEVDIMYGEGISQVGELLDMAAEMDIIDKSGAWYSYKGDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN K +++E+ E+ E + + +R   G+
Sbjct: 302 ENVKQYMKEHPEMVEEVSARVRDAYGI 328


>gi|325106520|ref|YP_004276174.1| recA protein [Pedobacter saltans DSM 12145]
 gi|324975368|gb|ADY54352.1| recA protein [Pedobacter saltans DSM 12145]
          Length = 341

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 209/325 (64%), Positives = 264/325 (81%), Gaps = 2/325 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  +K KAL+  L ++++ YGKG +M+LG   +  E +E +S+GSLGLDIALGIGG PKG
Sbjct: 3   NPSEKLKALQLTLDKLEKSYGKGTVMKLGD--APVEAMEAISTGSLGLDIALGIGGLPKG 60

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EIYGPESSGKTTLA H IA++QK GG  A +DAEHA D  YA+KLGVD++NLLISQP
Sbjct: 61  RIIEIYGPESSGKTTLATHVIAEAQKAGGIAAIIDAEHAFDQFYAQKLGVDIENLLISQP 120

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI D L+RSGA+D+IVIDSVAAL P+ EIEG+MG+S  G+QARLMSQALRKLT
Sbjct: 121 DNGEQALEIADNLIRSGAIDVIVIDSVAALVPKGEIEGEMGDSKMGLQARLMSQALRKLT 180

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            +IS++KC  +FINQ+R KIGVMFG+PETTTGGNALKFYSSVRLDIRR+  IKD D + G
Sbjct: 181 GTISKTKCCCIFINQLRDKIGVMFGNPETTTGGNALKFYSSVRLDIRRISQIKDSDEVAG 240

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+ +VK+VKNK+A PF+  EFDIM+GEGIS  GE+IDLGV+  I+ K+G+WFS+   +LG
Sbjct: 241 NRVKVKIVKNKVAPPFRIAEFDIMFGEGISKAGEIIDLGVEYGIIKKAGSWFSYGDSKLG 300

Query: 308 QGRENSKIFLRENIEIAENIESLLR 332
           QGR+  K  + +N E+AE +E+ ++
Sbjct: 301 QGRDAVKQLIMDNPELAEELEAKIK 325


>gi|76363329|sp|Q6KCJ5|RECA_ENTHR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|47678140|emb|CAF21833.1| RecA recombinase [Enterococcus hirae]
          Length = 346

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/335 (59%), Positives = 265/335 (79%), Gaps = 2/335 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ YGKG+IM+LG +  I + +  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKAALDAALKKIEKNYGKGSIMKLGEK--IDQQVSTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+V+DSVAAL PRAEI+G+MG+S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E D+MYG+GIS  GEL+D+ V+  IVDKSGAW+S+K  R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKIAEVDVMYGQGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           EN+K ++  + E+   + +L+R   G+  D  + E
Sbjct: 302 ENAKNYMSTHPEMMAEVSALVRAAYGIGEDVEIPE 336


>gi|238897272|ref|YP_002922949.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259563338|sp|C4K841|RECA_HAMD5 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|229465027|gb|ACQ66801.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 354

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 204/340 (60%), Positives = 262/340 (77%), Gaps = 11/340 (3%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTT
Sbjct: 18  IEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTT 75

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G  CAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L R
Sbjct: 76  LTLQVIAAAQREGKVCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDSLTR 135

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+I++DSVAAL P+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ
Sbjct: 136 SGAVDVIIVDSVAALVPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQ 195

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRRVG+IK+ + + GN TRVKVVKNK+A+P
Sbjct: 196 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRVGAIKEGEMVIGNDTRVKVVKNKIAAP 255

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FKQ +F I+YGEGI+  GELIDLGVK  +V+K+G+W+S+ G ++GQG+ N   +L+ N  
Sbjct: 256 FKQADFQILYGEGINTHGELIDLGVKHQLVEKAGSWYSYNGTKIGQGKSNVTEYLKTNPS 315

Query: 323 IAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           IA  ++ +LR          L  P +  KD  D D  D +
Sbjct: 316 IAAELDKILRNR--------LLNP-VCEKDKTDLDPLDKI 346


>gi|315658425|ref|ZP_07911297.1| recombination protein A [Staphylococcus lugdunensis M23590]
 gi|315496754|gb|EFU85077.1| recombination protein A [Staphylococcus lugdunensis M23590]
          Length = 367

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 201/327 (61%), Positives = 257/327 (78%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+  +  +++ +GKGA+M+LG        +  VS+GS+ LD ALG+GG+PKGRI+
Sbjct: 23  DRQKALDTVIKNMEKSFGKGAVMKLGDNKG--RRVSSVSTGSVTLDNALGVGGYPKGRII 80

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD  YA  LGVD+ NL +SQPD G
Sbjct: 81  EIYGPESSGKTTVALHAIAEVQKNGGIAAFIDAEHALDPEYAAALGVDIDNLYLSQPDHG 140

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI +  VRSGAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 141 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 200

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S    +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T
Sbjct: 201 SKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRT 260

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G R+GQG+
Sbjct: 261 KIKVVKNKVAPPFKVAEVDIMYGQGISKEGELIDLGVEHDIVDKSGAWYSYNGDRMGQGK 320

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN K +L+EN E+ ++I+  LR+  G+
Sbjct: 321 ENVKTYLKENPEVRDDIDRKLREKLGI 347


>gi|52630769|gb|AAU84852.1| RecA [Burkholderia graminis C4D1M]
          Length = 271

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 197/271 (72%), Positives = 239/271 (88%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF
Sbjct: 1   VVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKIGGTAAF 60

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           +DAEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+
Sbjct: 61  IDAEHALDIQYAGKLGVNVNDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPK 120

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
           AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGG
Sbjct: 121 AEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGG 180

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           NALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  G
Sbjct: 181 NALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQG 240

Query: 281 ELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           E+IDLGV+A IVDK+GAW+S+ G+R+GQ  E
Sbjct: 241 EIIDLGVQAKIVDKAGAWYSYSGERIGQAGE 271


>gi|148262302|ref|YP_001229008.1| recombinase A [Geobacter uraniireducens Rf4]
 gi|146395802|gb|ABQ24435.1| recA protein [Geobacter uraniireducens Rf4]
          Length = 333

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 208/323 (64%), Positives = 270/323 (83%), Gaps = 1/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KA++ ALSQI++ +GKG+IM+LG+   + + +  + +GSL LD+ALG+GG P+GRI+
Sbjct: 3   EREKAIDLALSQIEKQFGKGSIMRLGNDEPLPD-VAAIPTGSLSLDMALGVGGVPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH +A++QK  G  AF+DAEHALD  YARKLGV   +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLALHIVAEAQKLDGIAAFIDAEHALDIGYARKLGVRTDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+D++VIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  I
Sbjct: 122 EQALEIAETLVRSGAIDVLVIDSVAALVPKAEIEGDMGDSHMGLQARLMSQALRKLTGII 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S C ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIR++ S+K  + + G++T
Sbjct: 182 SKSNCCVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRKIASLKQGNDVIGSRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PFK+VEFDI+YGEGIS  G+++DL V+  +VDKSGAWFS+  +R+GQGR
Sbjct: 242 KVKVVKNKVAPPFKEVEFDILYGEGISREGDILDLAVEKGVVDKSGAWFSYGKERIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           ENS+I+L++N EI   I   L Q
Sbjct: 302 ENSRIYLKQNPEICAEIREKLTQ 324


>gi|315640316|ref|ZP_07895433.1| recombination protein A [Enterococcus italicus DSM 15952]
 gi|315483978|gb|EFU74457.1| recombination protein A [Enterococcus italicus DSM 15952]
          Length = 347

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 198/337 (58%), Positives = 266/337 (78%), Gaps = 2/337 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ +GKGA+M+LG +  + + I  + SGSL LD+ALG+GG+P+GRIV
Sbjct: 4   DRKAALDAALKRIEKNFGKGAVMKLGEK--VDQKISTIPSGSLALDVALGVGGYPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+ LGV++ +LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQNLGVNIDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+VIDSVAAL PRAEI+G+MG++  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVIDSVAALVPRAEIDGEMGDTHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKSGTDIIGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYGEGIS  GEL+D+  +  I+DKSGAW+S+KG R+GQGR
Sbjct: 242 KIKVVKNKVAPPFRIAEVDIMYGEGISQVGELLDMAAEMDIIDKSGAWYSYKGDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           EN K +++E+ E+   + + +R   G+ +   + E A
Sbjct: 302 ENVKSYMKEHPEMVAEVSARVRDAYGIGSGETIAEDA 338


>gi|223039980|ref|ZP_03610262.1| protein RecA [Campylobacter rectus RM3267]
 gi|222878700|gb|EEF13799.1| protein RecA [Campylobacter rectus RM3267]
          Length = 345

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/346 (62%), Positives = 270/346 (78%), Gaps = 5/346 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+ AL QI +V+GKG+I++LG      E I+ VS+GSLGLD+ALG+GG PKGRI+
Sbjct: 4   DKKKALDLALKQIDKVFGKGSIVRLGDVE--IEPIDAVSTGSLGLDLALGVGGIPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GGTCAFVDAEHALD  YA  LGVD  NL +SQPD G
Sbjct: 62  EIYGPESSGKTTLTLHIIAECQKAGGTCAFVDAEHALDVKYASNLGVDTDNLYVSQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L RSGA+D+IV+DSVAALTP++EIEGDMG+   G+QARLMSQALRKL   +
Sbjct: 122 EQALEIVENLARSGAIDLIVVDSVAALTPKSEIEGDMGDQHVGLQARLMSQALRKLAGVV 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R++ ++K  D   GN+
Sbjct: 182 HKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKIATLKQNDEPIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           T+VKVVKNK+A PFK  EFDIM+GEG+S  GE+ID GV   IVDKSGAWFS+K  +LGQG
Sbjct: 242 TKVKVVKNKVAPPFKVAEFDIMFGEGVSHEGEIIDYGVSLDIVDKSGAWFSYKETKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           +ENSK FL+E+ EI   I S ++ + G+  + ++     +T++D D
Sbjct: 302 KENSKAFLKEHPEIVSEIVSAIKSSMGI--EHIINNAGKDTEEDND 345


>gi|687249|gb|AAC43379.1| RecA [Helicobacter pylori]
 gi|307636843|gb|ADN79293.1| recombinaseA [Helicobacter pylori 908]
 gi|325995432|gb|ADZ50837.1| Recombinase A [Helicobacter pylori 2018]
 gi|325997030|gb|ADZ49238.1| Recombinase A [Helicobacter pylori 2017]
          Length = 347

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/327 (60%), Positives = 262/327 (80%), Gaps = 3/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+  A+ QI +V+GKGA+++LG +    E I+ +S+GSLGLD+ALGIGG PKGRI+
Sbjct: 6   DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDAISTGSLGLDLALGIGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQP TG
Sbjct: 64  EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  +
Sbjct: 124 EEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    L+FINQ+RMKIG+  +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+
Sbjct: 184 HKMNTTLIFINQIRMKIGMTGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF++ EFDIM+GEGIS  GE+ID GVK  IVDKSGAW S++ ++LGQG
Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336
           REN+K  L+E+  +A  I   ++++ G
Sbjct: 304 RENAKALLKEDKALANEITLKIKESIG 330


>gi|289449615|ref|YP_003474954.1| protein RecA [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184162|gb|ADC90587.1| protein RecA [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 383

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/351 (57%), Positives = 273/351 (77%), Gaps = 5/351 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +++KALE AL +I+  +GKG+IM+LG Q      +  +S+G+L LDIALG+GG P+GRIV
Sbjct: 21  ERAKALEIALDKIEEQFGKGSIMKLGEQSDT--DVRAISTGALALDIALGVGGLPRGRIV 78

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA++QKTGGT AFVDAEHALD IYA  LGV++  LL+SQPDTG
Sbjct: 79  EIYGPESSGKTTVALHCIAEAQKTGGTAAFVDAEHALDPIYAEHLGVNIDELLVSQPDTG 138

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ALEIT+ LVRSGAVDIIVIDSVAAL P+AEI+G+MG+S  G+ ARLMSQALRKL   I
Sbjct: 139 EEALEITEALVRSGAVDIIVIDSVAALVPKAEIDGEMGDSHVGLHARLMSQALRKLAGII 198

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S+ +++FINQ+R K+GV++GSPE TTGG ALKFY+SVR+D+R+  +IK+   + GN+T
Sbjct: 199 SKSQTVVIFINQLRDKVGVVYGSPEVTTGGRALKFYASVRIDVRKGETIKNGSDLIGNRT 258

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNKMA PF++ EFDI++GEGIS  G ++D+     IV +SG WFS+   RLGQGR
Sbjct: 259 KIKVVKNKMAPPFREAEFDILFGEGISREGSILDVATTLGIVKRSGTWFSYNDLRLGQGR 318

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           +N++ +L+EN ++   I+  +R++   + +S  +  A  T DD    +T N
Sbjct: 319 DNARTYLKENKDLCNEIDQAVRES---LHNSNHKTTAETTGDDDHPGETAN 366


>gi|154498437|ref|ZP_02036815.1| hypothetical protein BACCAP_02426 [Bacteroides capillosus ATCC
           29799]
 gi|150272505|gb|EDM99690.1| hypothetical protein BACCAP_02426 [Bacteroides capillosus ATCC
           29799]
          Length = 374

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/320 (64%), Positives = 263/320 (82%), Gaps = 2/320 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LE A++QI+R YGKG+IM+LG    I   +E + +GSL LD+ALGIGG PKGRI+EIYGP
Sbjct: 26  LETAMAQIERAYGKGSIMRLGDNAGIV--VEAIPTGSLALDLALGIGGLPKGRIIEIYGP 83

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLALH  A++QK GG  AF+DAEHALD  YAR LGVD++++LISQPDTGEQ LE
Sbjct: 84  ESSGKTTLALHVAAEAQKRGGEVAFIDAEHALDPTYARALGVDIESMLISQPDTGEQGLE 143

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I + LVRSGA+D++V+DSVAALTPRAEIEGDMG+S  G+ ARLMSQALRKL  SI+++ C
Sbjct: 144 ICEALVRSGAIDVVVVDSVAALTPRAEIEGDMGDSHVGLLARLMSQALRKLAGSIAKTNC 203

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           I++FINQ+R K+GV++G+PE TTGG ALKFYSSVR+D+RR  ++K    + GN+TR KVV
Sbjct: 204 IVIFINQLREKVGVVYGNPEVTTGGRALKFYSSVRIDVRRTEALKSGSEVIGNRTRAKVV 263

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK+A PF++ EFDIMYGEGIS  GELIDLGVK  +V KSG+WF+    RLGQGR+ +K 
Sbjct: 264 KNKVAPPFREAEFDIMYGEGISKVGELIDLGVKLDLVQKSGSWFAMGDMRLGQGRDAAKQ 323

Query: 316 FLRENIEIAENIESLLRQNA 335
           FLR+N E+A+ +E+ +R++A
Sbjct: 324 FLRDNPEVADKLEADIRRDA 343


>gi|302338561|ref|YP_003803767.1| recA protein [Spirochaeta smaragdinae DSM 11293]
 gi|301635746|gb|ADK81173.1| recA protein [Spirochaeta smaragdinae DSM 11293]
          Length = 381

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/358 (58%), Positives = 269/358 (75%), Gaps = 15/358 (4%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGS---QGSIFEGIEVVSSGSLGLDIALGIGGF 64
           N  +K KALEAA  QI++ +GKG++M+LG    QG+I    E + SGS+ LD ALG+GG+
Sbjct: 14  NREEKEKALEAARLQIEKQFGKGSLMKLGGENRQGNI----ETIPSGSILLDAALGVGGY 69

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRIVEIYGPESSGKTTLALH IA+ QK GG  AF+DAEHALD +YAR LGV++  + +
Sbjct: 70  PKGRIVEIYGPESSGKTTLALHAIAECQKQGGIAAFIDAEHALDPVYARNLGVNIDEMWV 129

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI + LVRSGAVDIIV+DSVAALTP+AEIEGDMG+S  G+QARLMSQALR
Sbjct: 130 SQPDTGEQALEIAESLVRSGAVDIIVVDSVAALTPQAEIEGDMGDSHMGLQARLMSQALR 189

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI-KDKD 243
           KLT  IS+S   L+FINQ+RMKIGVMFG+PETTTGG ALKFYSSVR+++RR+ +I K  D
Sbjct: 190 KLTGIISKSGACLIFINQIRMKIGVMFGNPETTTGGKALKFYSSVRIEVRRIETISKGAD 249

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
              GN+ R+K+ KNK+A PFK+ E +I++G+GIS    L+D  +K  ++ KSG+W+S+  
Sbjct: 250 EAIGNRVRIKIAKNKVAPPFKKAELEIIFGKGISASASLLDAALKFEVIQKSGSWYSYGE 309

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           +R+GQGREN+K+FL  N ++AE I+  +R         L  EP   TK      + D 
Sbjct: 310 ERIGQGRENAKLFLETNADVAEEIDKKVRV-------LLFPEPTPETKQKEVPKEEDK 360


>gi|31540565|gb|AAP49245.1| RecA [Mycobacterium smegmatis]
          Length = 308

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 197/304 (64%), Positives = 254/304 (83%), Gaps = 2/304 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 7   DREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRVI 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+T
Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG+
Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304

Query: 311 ENSK 314
           EN++
Sbjct: 305 ENAR 308


>gi|302332891|gb|ADL23084.1| recombination protein RecA [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 347

 Score =  422 bits (1084), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/327 (60%), Positives = 258/327 (78%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+  +  +++ +GKGA+M+LG   +I   +   S+GS+ LD ALG+GG+PKGRI+
Sbjct: 4   DRQKALDTVIKNMEKSFGKGAVMKLGD--NIGRRVSTTSTGSVTLDNALGVGGYPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ Q  GG  AF+DAEHALD  YA+ LGVD+ NL +SQPD G
Sbjct: 62  EIYGPESSGKTTVALHAIAEVQSNGGVAAFIDAEHALDPEYAQALGVDIDNLYLSQPDHG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI +  VRSGAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 122 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S    +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T
Sbjct: 182 SKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G+R+GQG+
Sbjct: 242 KIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN K++L+EN +  E I+  LR+  G+
Sbjct: 302 ENVKMYLKENPQFKEEIDRKLREKLGI 328


>gi|297617235|ref|YP_003702394.1| recA protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297145072|gb|ADI01829.1| recA protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 340

 Score =  422 bits (1084), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 196/322 (60%), Positives = 267/322 (82%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ +ALE+A+ +I++ +G+G+IM+LG   ++   + VV +G L LD+ALG+GG P+GR+V
Sbjct: 6   DRLEALESAIRKIEKDFGRGSIMKLGEAAAM--NVAVVPTGCLSLDMALGVGGLPRGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTT+ALH IA++QK GG  AF+D EHALD +YA++LGV++ +LL+SQPDTG
Sbjct: 64  EIFGPESSGKTTVALHVIAEAQKDGGIAAFIDVEHALDPLYAKRLGVNINDLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVD++V+DSVAAL P+AE+EG+MG+   G+QARLMSQALRKLT +I
Sbjct: 124 EQALEIAEALVRSGAVDVLVVDSVAALVPKAELEGEMGDIHVGLQARLMSQALRKLTGTI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S+   +FINQ+R K+GV++G+PETT GG ALKFY+SVRL++R+V +IK      G++T
Sbjct: 184 SKSRTCAIFINQIREKVGVVYGNPETTPGGRALKFYASVRLEVRKVDNIKQGTETVGSRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDIMYGEGIS  G+L+DLGV+  I+ KSGAW+S++G+R+GQGR
Sbjct: 244 RVKVVKNKVAPPFKQAEFDIMYGEGISKEGDLLDLGVELKILQKSGAWYSYEGERIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           EN K FLR N ++ + +ES +R
Sbjct: 304 ENVKDFLRANPDVFKEVESRIR 325


>gi|226227323|ref|YP_002761429.1| RecA protein [Gemmatimonas aurantiaca T-27]
 gi|226090514|dbj|BAH38959.1| RecA protein [Gemmatimonas aurantiaca T-27]
          Length = 341

 Score =  422 bits (1084), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 205/327 (62%), Positives = 269/327 (82%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL  A++QI++  GKG+IM+LG+   +   +E + +G++ LD A+G+GG P+GR+ 
Sbjct: 5   DKRKALALAVAQIEKSCGKGSIMRLGTDAKVR--VESIPTGAINLDAAIGVGGIPRGRVT 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH +A +QK GG  AF+DAEHALD+ YA+KLGVD++N+LISQPDTG
Sbjct: 63  EIYGPESSGKTTLCLHVVANAQKQGGVAAFIDAEHALDTEYAKKLGVDVENMLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI ++LVRSGAVD+IVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT +I
Sbjct: 123 EQALEICEILVRSGAVDVIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGAI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +RSK  ++FINQ+R KIGVMFG+PETTTGG ALKFY+S+RLDIRR+G +K+K+ + G+  
Sbjct: 183 ARSKVSVIFINQLREKIGVMFGNPETTTGGKALKFYASLRLDIRRIGPVKEKEDVIGSHV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDIMY EGIS    L+D+GV++ I+DK+GAW+S+  QR+GQGR
Sbjct: 243 RVKVVKNKVAPPFKQAEFDIMYAEGISHTSLLVDIGVESGIIDKAGAWYSYGTQRIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K+FL++N  +   +E  ++   G+
Sbjct: 303 ENAKMFLKDNPALMAEVEDKVKTVLGV 329


>gi|47571266|gb|AAT35790.1| RecA [Mycobacterium asiaticum]
          Length = 307

 Score =  422 bits (1084), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 194/307 (63%), Positives = 256/307 (83%), Gaps = 2/307 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 3   DREKALELAMAQIEKSYGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVI 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 61  EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 121 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R  IGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+T
Sbjct: 181 NNSGTTAIFINQLRGTIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNRT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV    + KSG+WF+++G+++GQG+
Sbjct: 241 RVKVVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVDQGFIRKSGSWFTYEGEQIGQGK 300

Query: 311 ENSKIFL 317
           EN++ FL
Sbjct: 301 ENARNFL 307


>gi|297613920|gb|ADI48367.1| recA [Burkholderia fungorum]
          Length = 271

 Score =  422 bits (1084), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 196/269 (72%), Positives = 239/269 (88%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGT AF+D
Sbjct: 3   EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFID 62

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA KLGV++ +LL+SQPDTG QALEI D LVRSG++D+IVIDSVAAL P+AE
Sbjct: 63  AEHALDIQYAGKLGVNVSDLLVSQPDTGGQALEIADALVRSGSIDMIVIDSVAALVPKAE 122

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           IEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNA
Sbjct: 123 IEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNA 182

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A PF++  FDI+YGEGIS  GE+
Sbjct: 183 LKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPPFREAIFDILYGEGISRQGEI 242

Query: 283 IDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           IDLGV+A IVDK+GAW+S+ G+R+GQG++
Sbjct: 243 IDLGVQAKIVDKAGAWYSYNGERIGQGKD 271


>gi|323489614|ref|ZP_08094841.1| recombinase A [Planococcus donghaensis MPA1U2]
 gi|323396745|gb|EGA89564.1| recombinase A [Planococcus donghaensis MPA1U2]
          Length = 353

 Score =  421 bits (1083), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/329 (60%), Positives = 261/329 (79%), Gaps = 2/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG++M+LG        I  VSSGSL LD ALGIGG+P+GR++
Sbjct: 3   DRKAALDMALKQIEKQFGKGSVMKLGENSD--RNISSVSSGSLALDTALGIGGYPRGRVI 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT++LH IA+ Q TGGT AF+DAEHALD +YA+ LGV++  LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVSLHAIAEVQATGGTAAFIDAEHALDPVYAKNLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDI+V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+  I
Sbjct: 121 EQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLSGVI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++S  I++FINQ+R KIGVMFG+PETT GG ALKFYSSVRL++RR  ++K    I GN+T
Sbjct: 181 NKSNTIVIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKSGTEIIGNRT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++K+VKNK+A PF+  E DIMYG+GIS  GE++D+G    I+ KSG+W+S+  +R+GQGR
Sbjct: 241 KIKIVKNKVAPPFRTAEVDIMYGKGISREGEIVDIGSDLEIIQKSGSWYSYNEERIGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           EN K FL +N EI   I + +R++ G+ A
Sbjct: 301 ENVKQFLLKNPEIRNEISNKIRESYGMAA 329


>gi|237785699|ref|YP_002906404.1| recombinase A [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758611|gb|ACR17861.1| recombinase A [Corynebacterium kroppenstedtii DSM 44385]
          Length = 379

 Score =  421 bits (1083), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 209/355 (58%), Positives = 274/355 (77%), Gaps = 7/355 (1%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL+ AL++I++ +GKGA+M+LG        I  +SSG++ +++ALGIGGFP+GR+VEIY
Sbjct: 21  KALDTALAKIEKDFGKGAVMRLGDDKR--PPISSISSGNIAINVALGIGGFPRGRVVEIY 78

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTT+ALH IA++QK GG  AF+DAEHALD  YARKLGVD   LL++QPDTGEQA
Sbjct: 79  GPESSGKTTVALHAIAEAQKDGGIAAFIDAEHALDPEYARKLGVDTDALLVAQPDTGEQA 138

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI DML+RSGA+ IIVIDSVAALTP+AEI+G+MG+S  G+QARLMSQALRK+T ++S+S
Sbjct: 139 LEIADMLIRSGALAIIVIDSVAALTPKAEIDGEMGDSHVGLQARLMSQALRKMTGALSQS 198

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
               +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR DIRR+ ++KD   + GN+TR+K
Sbjct: 199 GTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRIQALKDGQDVIGNRTRLK 258

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VVKNK++ PFK  EFDI+YGEGIS  G +IDLGV   I+ KSG+W++++G++LGQG+E  
Sbjct: 259 VVKNKVSPPFKVSEFDILYGEGISREGSIIDLGVDYGIIKKSGSWYTYEGEQLGQGKEKV 318

Query: 314 KIFLRENIEIAENIESLLRQNAGL-----VADSLLQEPAINTKDDADKDDTDNVE 363
           + +L+ N ++A  IE  + + A +     V D    E   N+ DD   D   NV+
Sbjct: 319 RDYLKNNSDLAGTIEDKIMRAAKVGPYANVTDDDAAESESNSSDDDPIDVVPNVD 373


>gi|257066125|ref|YP_003152381.1| recA protein [Anaerococcus prevotii DSM 20548]
 gi|256798005|gb|ACV28660.1| recA protein [Anaerococcus prevotii DSM 20548]
          Length = 347

 Score =  421 bits (1083), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 204/324 (62%), Positives = 257/324 (79%), Gaps = 2/324 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+ A   I++ YGKGAIM++G    +   +  + +G++ LDIALGIGG P+GR+V
Sbjct: 4   DKQKALDQAFKNIEKKYGKGAIMKMGEAPRV--SVSAIPTGAVNLDIALGIGGIPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTLALH +A+ QK   TCAF+DAEHALD+ YA  LGVD+ NL++SQPDTG
Sbjct: 62  EIFGPESSGKTTLALHIVAEDQKQDQTCAFIDAEHALDAEYAENLGVDIDNLILSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ L+I + LVRSGAVD+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALR+LT  I
Sbjct: 122 EQGLDIAESLVRSGAVDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRRLTGVI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++S   ++FINQ+R K+GVMFGSPETT GG ALKFYSSVRLDIRR+ +I   D+  G++T
Sbjct: 182 AKSNTTVIFINQLREKVGVMFGSPETTPGGRALKFYSSVRLDIRRIKTITQGDNSIGSRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK VEFDIMYG+GIS  G L+D  V   IVDK+G+WFS+K ++LGQGR
Sbjct: 242 RVKVVKNKVAPPFKVVEFDIMYGKGISKSGVLLDTAVDMDIVDKAGSWFSYKDEKLGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQN 334
           EN K  L EN E+   I++ +R++
Sbjct: 302 ENVKDLLEENPELMAQIDAEVRKS 325


>gi|38258437|sp|Q83TH4|RECA_LISSE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|30265989|gb|AAN15810.1| RecA [Listeria seeligeri]
 gi|30265991|gb|AAN15811.1| RecA [Listeria seeligeri]
 gi|56182513|gb|AAV84009.1| RecA [Listeria seeligeri]
 gi|56182515|gb|AAV84010.1| RecA [Listeria seeligeri]
 gi|56182517|gb|AAV84011.1| RecA [Listeria seeligeri]
 gi|56182519|gb|AAV84012.1| RecA [Listeria seeligeri]
 gi|56182521|gb|AAV84013.1| RecA [Listeria seeligeri]
 gi|56182523|gb|AAV84014.1| RecA [Listeria seeligeri]
 gi|66735132|gb|AAY53807.1| RecA [Listeria seeligeri]
 gi|313633314|gb|EFS00165.1| protein RecA [Listeria seeligeri FSL N1-067]
 gi|313637916|gb|EFS03233.1| protein RecA [Listeria seeligeri FSL S4-171]
          Length = 348

 Score =  421 bits (1083), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 195/323 (60%), Positives = 260/323 (80%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+
Sbjct: 3   DRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 121 EQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR   +K    + GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYGEGIS  GEL+D+  +  +++KSG+W+S+K +R+GQGR
Sbjct: 241 KIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           EN+K +L+E+ +I + I   +R+
Sbjct: 301 ENAKQYLKEHTDIRDEISKRVRE 323


>gi|116872830|ref|YP_849611.1| recombinase A [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|38258436|sp|Q83TH3|RECA_LISWE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123463758|sp|A0AIK0|RECA_LISW6 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|30266001|gb|AAN15816.1| RecA [Listeria welshimeri]
 gi|30266003|gb|AAN15817.1| RecA [Listeria welshimeri]
 gi|55535654|gb|AAV52892.1| RecA [Listeria welshimeri]
 gi|116741708|emb|CAK20832.1| RecA protein (Recombinase A) [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 348

 Score =  421 bits (1083), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 195/323 (60%), Positives = 260/323 (80%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+
Sbjct: 3   DRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 121 EQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR   +K    + GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYGEGIS  GEL+D+  +  +++KSG+W+S+K +R+GQGR
Sbjct: 241 KIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           EN+K +L+E+ +I + I   +R+
Sbjct: 301 ENAKQYLKEHTDIRDEISQRVRE 323


>gi|301629465|ref|XP_002943860.1| PREDICTED: hypothetical protein LOC100489290 [Xenopus (Silurana)
           tropicalis]
          Length = 844

 Score =  421 bits (1083), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/285 (71%), Positives = 248/285 (87%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           LGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGTCAFVDAEHALD  YA
Sbjct: 545 LGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTCAFVDAEHALDVQYA 604

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            KLGV+L +LLISQPDTGEQALEI D LVRSGAVD+IV+DSVAALTP+AEIEGDMG+ LP
Sbjct: 605 SKLGVNLPDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAALTPKAEIEGDMGDQLP 664

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QARLMSQALRKLT++I ++ C ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLD
Sbjct: 665 GLQARLMSQALRKLTATIKKTNCTVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLD 724

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           IRR G+IK  +   GN+T+VKVVKNK++ PFK  EFDI++GEGIS  GE+ID+GV A IV
Sbjct: 725 IRRTGTIKKGEEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVNARIV 784

Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           +KSGAW+++ G+++GQGR+N++ FLREN ++A  IE+ +R+  G+
Sbjct: 785 EKSGAWYAYGGEKIGQGRDNAREFLRENRDLAREIENRVREQLGI 829


>gi|317010432|gb|ADU84179.1| recombinase A [Helicobacter pylori SouthAfrica7]
          Length = 347

 Score =  421 bits (1082), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/327 (60%), Positives = 262/327 (80%), Gaps = 3/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+  A+ QI +V+GKGA+++LG +    E I+ +S+GSLGLD+ALGIGG PKGRI+
Sbjct: 6   DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDSISTGSLGLDLALGIGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQP TG
Sbjct: 64  EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  +
Sbjct: 124 EEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    L+FINQ+RMKIG+  +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+
Sbjct: 184 HKMNTTLIFINQIRMKIGMTGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF++ EFDIM+GEGIS  GE+ID GVK  IVDKSGAW S++ ++LGQG
Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336
           REN+K  L+E+  +A  I   ++++ G
Sbjct: 304 RENAKALLKEDKALANEITLKIKESIG 330


>gi|256419900|ref|YP_003120553.1| recA protein [Chitinophaga pinensis DSM 2588]
 gi|256034808|gb|ACU58352.1| recA protein [Chitinophaga pinensis DSM 2588]
          Length = 336

 Score =  421 bits (1082), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/323 (64%), Positives = 265/323 (82%), Gaps = 2/323 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            DK KAL   + +I++ +GKG++M +G +G+  + +EV+S+GSLGLDIALGIGGFPKGRI
Sbjct: 6   TDKLKALRLTMDKIEKDFGKGSVMMMGEKGT--DPMEVISTGSLGLDIALGIGGFPKGRI 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+A+HTIA++QK GG CA +DAEHA DS YA++LGVD+  LLISQPD 
Sbjct: 64  IEIYGPESSGKTTVAIHTIAEAQKKGGICAIIDAEHAFDSSYAQRLGVDVDALLISQPDH 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D L+ SGAVD++VIDSVAAL P+ E+EG+MGES  G+QARLMSQALRKLT++
Sbjct: 124 GEQALEIADRLILSGAVDVVVIDSVAALVPKGELEGEMGESKMGLQARLMSQALRKLTAT 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS++ C  +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR+  IKD D   GN+
Sbjct: 184 ISKTNCCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRMTQIKDGDEAVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PF+Q EFDI++G+GIS  GE+ID+GV+  I+ KSG+WFS+   +LGQG
Sbjct: 244 VKVKVVKNKVAPPFRQAEFDIIFGQGISKMGEIIDMGVEYGIIQKSGSWFSYDTNKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLR 332
           R+  K  L +N E+A  IE  ++
Sbjct: 304 RDAVKTLLLDNPEVAAEIERKIK 326


>gi|297569858|ref|YP_003691202.1| recA protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296925773|gb|ADH86583.1| recA protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 366

 Score =  421 bits (1082), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/327 (60%), Positives = 266/327 (81%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSK L++A+ QIQ+ +GKG+IM+LG+   +   +  +S+G L LDIA GIGG P+GRI+
Sbjct: 11  NKSKTLDSAIFQIQKQFGKGSIMRLGADERV--AVPAISTGILSLDIATGIGGIPRGRII 68

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTLAL  IA +Q+ GG  AF+DAEHALD  YA +LGV+  +LLISQPD G
Sbjct: 69  EVYGPESSGKTTLALQIIASAQRQGGAVAFIDAEHALDVTYAERLGVNADDLLISQPDYG 128

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI ++L+RSGAVD+IV+DSVAALTP+AEI+G++G++  G+QARLMSQ +RKL + +
Sbjct: 129 EQALEIAEILIRSGAVDVIVVDSVAALTPKAEIDGNIGDTHVGLQARLMSQTMRKLAAIL 188

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+   ++FINQ+RMKIGVMFG+PETTTGGNALKFYSS+R+DIRR+ +IKD + + GN+ 
Sbjct: 189 QRTNTAIIFINQIRMKIGVMFGNPETTTGGNALKFYSSMRIDIRRMTAIKDGEEVIGNRV 248

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           + K+VKNK+A PFK  EFDI++GEG S  G+L+DL V  +I+DKSGAW+S+ G+R+GQGR
Sbjct: 249 KAKLVKNKVAPPFKVAEFDIIFGEGSSREGDLLDLAVGQNIIDKSGAWYSYNGERIGQGR 308

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           ENSK +LRE+ E+A+ IE  +R   GL
Sbjct: 309 ENSKQYLREHPELADEIERKVRLGFGL 335


>gi|315924490|ref|ZP_07920711.1| recombination protein A [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622194|gb|EFV02154.1| recombination protein A [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 370

 Score =  421 bits (1082), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/331 (60%), Positives = 259/331 (78%), Gaps = 5/331 (1%)

Query: 7   MNIVD---KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           M+I D   + KAL+ AL  I++ YGKGA+M+LG  G+    ++V+S+ SL +D+ALGIGG
Sbjct: 12  MDITDAQARKKALDNALKNIEKTYGKGAVMRLGDSGA--RDVDVISTSSLRIDMALGIGG 69

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            PKGRI+EIYGPESSGKTTLALH IA++QK GG  AF+DAEHALD IYA  LGVD+ NL+
Sbjct: 70  VPKGRIIEIYGPESSGKTTLALHIIAEAQKKGGNAAFIDAEHALDPIYAASLGVDIDNLI 129

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPDTGEQALEI + L+RSGA+D+ VIDSVAAL PRAEIEG MG+S  G+ ARLMSQAL
Sbjct: 130 VSQPDTGEQALEILEALLRSGAIDVAVIDSVAALVPRAEIEGTMGDSHVGLHARLMSQAL 189

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT  I  S    +FINQ+R K+GVM+G+PE TTGG ALKFYSSVR+D+RR+ ++K   
Sbjct: 190 RKLTGVIKNSNTATIFINQLREKVGVMYGNPEVTTGGRALKFYSSVRMDVRRIETLKKDG 249

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+TR KVVKNKMA PFK  EFDI+YG+GIS  G+++D+ V+  I+ KSG+WFS+ G
Sbjct: 250 EMIGNRTRCKVVKNKMAPPFKTAEFDIIYGKGISHEGDVLDMAVELDIIKKSGSWFSYNG 309

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQN 334
           +RLGQGR+N +  L +N ++ + +E  +R +
Sbjct: 310 ERLGQGRDNIRQMLEDNPDLCDEVEGKVRDH 340


>gi|218259590|ref|ZP_03475282.1| hypothetical protein PRABACTJOHN_00941 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225002|gb|EEC97652.1| hypothetical protein PRABACTJOHN_00941 [Parabacteroides johnsonii
           DSM 18315]
          Length = 347

 Score =  421 bits (1082), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 208/322 (64%), Positives = 265/322 (82%), Gaps = 2/322 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            DK KAL AA+ +I++ YGKG+IM+LG +    E IEV+ +GS+ L+ ALG+GG+PKGR+
Sbjct: 22  ADKLKALRAAMDKIEKNYGKGSIMKLGDES--VENIEVIPTGSIALNAALGVGGYPKGRV 79

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLA+H IA++QK+GG  AF+DAEHA D  YA KLGVD++NL ISQPD 
Sbjct: 80  IEIYGPESSGKTTLAIHAIAEAQKSGGIAAFIDAEHAFDRFYAEKLGVDVENLWISQPDN 139

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + L+RS AVDIIVIDSVAALTP+AEIEGDMGES  G+QARLMSQALRKLT++
Sbjct: 140 GEQALEIAEQLIRSSAVDIIVIDSVAALTPKAEIEGDMGESKMGLQARLMSQALRKLTAA 199

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I+++    +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR +G +KD D I GNQ
Sbjct: 200 INKTNTTCIFINQLRDKIGVMFGNPETTTGGNALKFYASVRLDIRSIGKLKDGDDIKGNQ 259

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            RVKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG + +I+ KSG+W+S+   +LGQG
Sbjct: 260 VRVKVVKNKVAPPFRKAEFDIMFGEGISKAGEIIDLGAELNIIKKSGSWYSYNDTKLGQG 319

Query: 310 RENSKIFLRENIEIAENIESLL 331
           R+ +K  + +N E+A+ +  L+
Sbjct: 320 RDAAKQCVADNPELADELSGLI 341


>gi|212704760|ref|ZP_03312888.1| hypothetical protein DESPIG_02824 [Desulfovibrio piger ATCC 29098]
 gi|212671823|gb|EEB32306.1| hypothetical protein DESPIG_02824 [Desulfovibrio piger ATCC 29098]
          Length = 360

 Score =  421 bits (1082), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/327 (61%), Positives = 263/327 (80%), Gaps = 3/327 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +++AL  AL+ I+R YGKGA+M+L  +  +   I V+ +GS+GLD+ALG+GG P+GRI E
Sbjct: 13  RAEALGTALATIERKYGKGAVMKLSDEAHV--NIPVIPTGSIGLDLALGVGGIPRGRITE 70

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPESSGKTTL LH IA+ QK GGTCAFVDAEHALD  YAR+LGV+   LLISQPD GE
Sbjct: 71  IFGPESSGKTTLTLHIIAECQKMGGTCAFVDAEHALDVNYARRLGVNTDELLISQPDYGE 130

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL+I DMLVRSGAVD++V+DSVAAL P+AE+EGDMGES  G  ARLMS A+R+LT +I 
Sbjct: 131 QALDIADMLVRSGAVDLVVVDSVAALIPQAELEGDMGESQVGGHARLMSHAMRRLTGTIH 190

Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +S+  ++FINQ+RMKIGV  +GSPETTTGGNALKFYSSVR+DIRR+ ++KDK+   G++T
Sbjct: 191 KSRTSVIFINQIRMKIGVTGYGSPETTTGGNALKFYSSVRMDIRRIQTLKDKEESFGSRT 250

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+   FDI+YG+GIS  GELIDLG++A I+++SG+WF+F  ++LGQGR
Sbjct: 251 RVKVVKNKVAPPFRSATFDILYGQGISRSGELIDLGLEAKIIEQSGSWFAFGSEKLGQGR 310

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           E  +  L E+ E+   IE+ + +  G+
Sbjct: 311 EKVRALLDEDPELRRQIEAKVTEFLGM 337


>gi|238926159|ref|ZP_04657919.1| recombination protein A [Selenomonas flueggei ATCC 43531]
 gi|238885839|gb|EEQ49477.1| recombination protein A [Selenomonas flueggei ATCC 43531]
          Length = 385

 Score =  421 bits (1082), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/321 (62%), Positives = 254/321 (79%), Gaps = 1/321 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + +ALE AL  I++ +GKGAIM+LG   +    IEV+S+G L LDIALG+GG P+GRI+E
Sbjct: 23  REEALENALRNIEKAHGKGAIMRLGEAKANMN-IEVISTGILPLDIALGVGGIPRGRIIE 81

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           ++GPESSGKTT+ALH IA++QK GG  AF+DAEHALD  YARKLGV++++LL+SQPDTGE
Sbjct: 82  VFGPESSGKTTVALHMIAEAQKAGGIAAFIDAEHALDPEYARKLGVNIEDLLVSQPDTGE 141

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LV S A+DIIV+DSVAAL P++EI+GDMG S  G+QARLMSQA+RKLT  IS
Sbjct: 142 QALEIVDALVHSAAIDIIVVDSVAALVPKSEIDGDMGASAVGLQARLMSQAMRKLTGIIS 201

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +++   VFINQ+R KIGV +G+PE TTGG ALKFY+SVR+D+RR  SIK      GN+TR
Sbjct: 202 KTRTAAVFINQLREKIGVTYGNPEVTTGGRALKFYASVRIDVRRADSIKQGTESLGNRTR 261

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
            ++VKNK+A PFK  EFDIMYGEG+S  G +ID+GV+  IVDKSGAWFS+ G RLGQG+E
Sbjct: 262 ARIVKNKVAPPFKTAEFDIMYGEGVSRLGSIIDMGVELDIVDKSGAWFSYGGTRLGQGKE 321

Query: 312 NSKIFLRENIEIAENIESLLR 332
           N+K  L E  E+   IE  +R
Sbjct: 322 NAKATLEERPEMITEIEEKIR 342


>gi|148657226|ref|YP_001277431.1| recombinase A [Roseiflexus sp. RS-1]
 gi|166220674|sp|A5UXX8|RECA_ROSS1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|148569336|gb|ABQ91481.1| recA protein [Roseiflexus sp. RS-1]
          Length = 353

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/347 (62%), Positives = 275/347 (79%), Gaps = 5/347 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AA+SQI R YGKG+IM++G   S    IEV+ +GS+ LDIALG+GG P+GR+V
Sbjct: 6   EKEKALAAAMSQIDRKYGKGSIMRMGEVSSKL-AIEVIPTGSIALDIALGVGGVPRGRVV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLA H IA++QK GG  AF+DAEHA D +YA + GVD+ NLL+SQPD G
Sbjct: 65  EIYGPESSGKTTLAQHIIAEAQKMGGIAAFIDAEHAFDPVYAARCGVDVNNLLVSQPDYG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRS AVD++V+DSVAAL PRAEIEGDMG+SLPG+QARLMSQALRKL+ +I
Sbjct: 125 EQALEICEALVRSNAVDVVVVDSVAALVPRAEIEGDMGDSLPGLQARLMSQALRKLSGAI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S+ +++F+NQ+R+KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++K+     G++T
Sbjct: 185 SKSRAVVIFLNQLRLKIGVMFGSPETTTGGQALKFYASVRMDIRRIETLKNGQETIGSRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EFDIM+ EGIS  G ++D+GV+  I+ KSGAWF     RLGQGR
Sbjct: 245 RVKVVKNKVAPPFRQAEFDIMHNEGISRAGNILDVGVELDIIRKSGAWFYLGDDRLGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           EN+K FL EN  +A+ IE L+R +A     S++       +DDA +D
Sbjct: 305 ENAKQFLNENPALADEIERLIRAHAMAAPISIVSP----KEDDAVED 347


>gi|220903572|ref|YP_002478884.1| recA protein [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|254790431|sp|B8J369|RECA_DESDA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|219867871|gb|ACL48206.1| recA protein [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 359

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/327 (62%), Positives = 262/327 (80%), Gaps = 3/327 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +++AL  AL+ I+R YGKGA+M+L     +   I V+ +GS+GLD+ALG+GG P+GRI E
Sbjct: 13  RAEALGTALATIERKYGKGAVMKLSDDAHV--NIPVIPTGSIGLDLALGVGGIPRGRISE 70

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPESSGKTTL LH IA+ Q+ GGTCAFVDAEHALD  YAR+LGV+   LLISQPD GE
Sbjct: 71  IFGPESSGKTTLTLHIIAECQRLGGTCAFVDAEHALDVSYARRLGVNTDELLISQPDYGE 130

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL+I DMLVRSGAVD++V+DSVAAL P+AE+EGDMGE+  G  ARLMS A+R+LT +I 
Sbjct: 131 QALDIADMLVRSGAVDLVVVDSVAALIPQAELEGDMGETQVGGHARLMSHAMRRLTGTIH 190

Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +S+  ++FINQ+RMKIGV  +GSPETTTGGNALKFYSSVRLDIRR+ ++KDK+   G++T
Sbjct: 191 KSRTSVIFINQIRMKIGVTGYGSPETTTGGNALKFYSSVRLDIRRIQTLKDKEESFGSRT 250

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+   FDI+YG GIS  GEL+DLG++A I+D+SG+WF+F  ++LGQGR
Sbjct: 251 RVKVVKNKVAPPFRSAVFDILYGLGISRAGELLDLGIEAKIIDQSGSWFAFGAEKLGQGR 310

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           E  +  L ENI++   IE+ + +  GL
Sbjct: 311 EKVRALLDENIDLRNQIEAKVVEFLGL 337


>gi|31540543|gb|AAP49234.1| RecA [Mycobacterium chelonae]
 gi|31540545|gb|AAP49235.1| RecA [Mycobacterium chelonae]
          Length = 307

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 197/304 (64%), Positives = 253/304 (83%), Gaps = 2/304 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE AL+QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 6   DREKALELALAQIDKSFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+ ++VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLVRSGAISLLVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD     GN+T
Sbjct: 184 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG+
Sbjct: 244 RVKVVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGK 303

Query: 311 ENSK 314
           EN++
Sbjct: 304 ENAR 307


>gi|225936952|emb|CAJ82773.1| recA recombinase [Enterococcus haemoperoxidus]
          Length = 349

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 199/327 (60%), Positives = 261/327 (79%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ +GKG++M+LG +  I + I  + SGSL LD+ALG+GG+P+GRIV
Sbjct: 4   DRKVALDAALKKIEKNFGKGSVMKLGEK--IDQQISTIPSGSLALDVALGVGGYPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA  Q+ GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIASVQQQGGTAAFIDAEHALDPQYAQALGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGA+DI+VIDSVAAL PRAEI+G+MG S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAIDIVVIDSVAALVPRAEIDGEMGASHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY++VRL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKQGTDIIGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+ V+  IVDKSGAW+S+K +R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGQGISQEGELLDMAVEKDIVDKSGAWYSYKEERIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN K+++ E+ E+ E +   +R   G+
Sbjct: 302 ENVKVYMTEHPEMVEEVSKRVRDAFGI 328


>gi|315282275|ref|ZP_07870719.1| protein RecA [Listeria marthii FSL S4-120]
 gi|313614088|gb|EFR87788.1| protein RecA [Listeria marthii FSL S4-120]
          Length = 347

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 195/323 (60%), Positives = 259/323 (80%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+
Sbjct: 3   DRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I
Sbjct: 121 EQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR   +K    + GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYGEGIS  GEL+D+  +  +++KSG+W+S+K +R+GQGR
Sbjct: 241 KIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           EN+K +L+E+ +I + I   +R+
Sbjct: 301 ENAKQYLKEHTDIRDEISKRVRE 323


>gi|47678132|emb|CAF21829.1| RecA recombinase [Enterococcus cecorum]
          Length = 348

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 199/327 (60%), Positives = 261/327 (79%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ +GKG+IM+LG +    + I  V SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKTALDAALKKIEKNFGKGSIMKLGEKAD--QQISTVPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKQGGTAAFIDAEHALDPAYAKKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDIIVIDSVAAL PRAEI+G+MG++  G+QARLMSQALRKL+ +I
Sbjct: 122 EQGLEIADALVSSGAVDIIVIDSVAALVPRAEIDGEMGDTHVGLQARLMSQALRKLSGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY++VRL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRSEQLKQGSDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYGEGIS  GEL+D+ V   +VDKSGAW+S+ G+R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEIDIMYGEGISQEGELLDMAVDVDLVDKSGAWYSYNGERIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN K +++++ E+   +   +R   G+
Sbjct: 302 ENVKNYMKDHPEMVSELLVKVRDAYGI 328


>gi|16800503|ref|NP_470771.1| recombinase A [Listeria innocua Clip11262]
 gi|20139535|sp|Q92BV7|RECA_LISIN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|16413908|emb|CAC96666.1| Recombination protein recA [Listeria innocua Clip11262]
 gi|30265997|gb|AAN15814.1| RecA [Listeria innocua]
 gi|30265999|gb|AAN15815.1| RecA [Listeria innocua]
 gi|313623831|gb|EFR93956.1| protein RecA [Listeria innocua FSL J1-023]
          Length = 348

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 195/323 (60%), Positives = 259/323 (80%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+
Sbjct: 3   DRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I
Sbjct: 121 EQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR   +K    + GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYGEGIS  GEL+D+  +  +++KSG+W+S+K +R+GQGR
Sbjct: 241 KIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           EN+K +L+E+ +I + I   +R+
Sbjct: 301 ENAKQYLKEHTDIRDEISKRVRE 323


>gi|16803438|ref|NP_464923.1| recombinase A [Listeria monocytogenes EGD-e]
 gi|224499746|ref|ZP_03668095.1| recombinase A [Listeria monocytogenes Finland 1988]
 gi|224501659|ref|ZP_03669966.1| recombinase A [Listeria monocytogenes FSL R2-561]
 gi|254827659|ref|ZP_05232346.1| recombination protein recA [Listeria monocytogenes FSL N3-165]
 gi|254829843|ref|ZP_05234498.1| recombinase A [Listeria monocytogenes 10403S]
 gi|254898436|ref|ZP_05258360.1| recombinase A [Listeria monocytogenes J0161]
 gi|254912073|ref|ZP_05262085.1| DNA recombinase [Listeria monocytogenes J2818]
 gi|254936400|ref|ZP_05268097.1| recombination protein recA [Listeria monocytogenes F6900]
 gi|284801784|ref|YP_003413649.1| recombinase A [Listeria monocytogenes 08-5578]
 gi|284994926|ref|YP_003416694.1| recombinase A [Listeria monocytogenes 08-5923]
 gi|11387032|sp|Q9L723|RECA_LISMO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|7385129|gb|AAF61708.1|AF229031_1 RecA [Listeria monocytogenes]
 gi|22770564|gb|AAN06657.1|AF497229_1 DNA recombinase [Listeria monocytogenes]
 gi|22770566|gb|AAN06658.1|AF497230_1 DNA recombinase [Listeria monocytogenes]
 gi|22770590|gb|AAN06670.1|AF497242_1 DNA recombinase [Listeria monocytogenes]
 gi|22770592|gb|AAN06671.1|AF497243_1 DNA recombinase [Listeria monocytogenes]
 gi|16410827|emb|CAC99476.1| Recombination protein recA [Listeria monocytogenes EGD-e]
 gi|258600038|gb|EEW13363.1| recombination protein recA [Listeria monocytogenes FSL N3-165]
 gi|258608992|gb|EEW21600.1| recombination protein recA [Listeria monocytogenes F6900]
 gi|284057346|gb|ADB68287.1| recombinase A [Listeria monocytogenes 08-5578]
 gi|284060393|gb|ADB71332.1| recombinase A [Listeria monocytogenes 08-5923]
 gi|293590041|gb|EFF98375.1| DNA recombinase [Listeria monocytogenes J2818]
          Length = 348

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 195/323 (60%), Positives = 259/323 (80%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+
Sbjct: 3   DRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I
Sbjct: 121 EQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR   +K    + GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYGEGIS  GEL+D+  +  +++KSG+W+S+K +R+GQGR
Sbjct: 241 KIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           EN+K +L+E+ +I + I   +R+
Sbjct: 301 ENAKQYLKEHTDIRDEISKRVRE 323


>gi|261885362|ref|ZP_06009401.1| recombinase A [Campylobacter fetus subsp. venerealis str. Azul-94]
          Length = 345

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/327 (65%), Positives = 261/327 (79%), Gaps = 3/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+ AL QI + +GKG +++LG +    E I+ +SSGS+GLDIALGIGG PKGRIV
Sbjct: 4   NKKKSLDLALKQIDKAFGKGTVLRLGDKE--IEPIDSISSGSIGLDIALGIGGVPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+SQK GG CAFVDAEHALD  YA+ LGVD  NL ISQPD G
Sbjct: 62  EIYGPESSGKTTLTLHLIAESQKVGGVCAFVDAEHALDVKYAKNLGVDTDNLYISQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL+I + L RSGAVD+IVIDSVAALTP++EIEGDMG+   G+QARLMSQALRKLT  +
Sbjct: 122 EQALDIVETLARSGAVDLIVIDSVAALTPKSEIEGDMGDQHVGLQARLMSQALRKLTGVV 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    +VFINQ+RMKIG M +G+PETTTGGNALKFY+SVRL++R++ ++K  D   GN+
Sbjct: 182 HKMGTTVVFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLNVRKIATLKQIDEPIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            ++KVVKNK+A PF+Q EFDIM+GEGIS  GE+ID GVK  I+DKSGAWFS+   +LGQG
Sbjct: 242 VKIKVVKNKVAPPFRQTEFDIMFGEGISKEGEIIDYGVKLDIIDKSGAWFSYDNSKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336
           RENSK FL+EN  IA+ I   +R N G
Sbjct: 302 RENSKAFLKENKAIADEITEKIRANMG 328


>gi|225936954|emb|CAJ82775.1| recA recombinase [Enterococcus moraviensis]
          Length = 350

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 199/327 (60%), Positives = 261/327 (79%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ +GKG++M+LG +  I + I  + SGSL LD+ALG+GG+P+GRIV
Sbjct: 4   DRKVALDAALKKIEKNFGKGSVMKLGEK--IDQQISTIPSGSLALDVALGVGGYPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA  Q+ GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIASVQQQGGTAAFIDAEHALDPQYAQALGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGA+DI+VIDSVAAL PRAEI+G+MG S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAIDIVVIDSVAALVPRAEIDGEMGASHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY++VRL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKQGTDIIGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+ V+  IVDKSGAW+S+K +R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGQGISQEGELLDMAVEKDIVDKSGAWYSYKEERIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN K+++ E+ E+ E +   +R   G+
Sbjct: 302 ENVKVYMTEHPEMVEEVSKRVRDAFGI 328


>gi|46907626|ref|YP_014015.1| recombinase A [Listeria monocytogenes str. 4b F2365]
 gi|47093404|ref|ZP_00231170.1| recA protein [Listeria monocytogenes str. 4b H7858]
 gi|217964455|ref|YP_002350133.1| protein RecA [Listeria monocytogenes HCC23]
 gi|226223999|ref|YP_002758106.1| Recombination protein recA [Listeria monocytogenes Clip81459]
 gi|254824542|ref|ZP_05229543.1| recA protein [Listeria monocytogenes FSL J1-194]
 gi|254932583|ref|ZP_05265942.1| recombinase A [Listeria monocytogenes HPB2262]
 gi|254991973|ref|ZP_05274163.1| recombinase A [Listeria monocytogenes FSL J2-064]
 gi|290894424|ref|ZP_06557385.1| recA protein [Listeria monocytogenes FSL J2-071]
 gi|300765752|ref|ZP_07075728.1| recA protein [Listeria monocytogenes FSL N1-017]
 gi|59798318|sp|Q71ZS2|RECA_LISMF RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|254790436|sp|B8DFS9|RECA_LISMH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|259563339|sp|C1L2V4|RECA_LISMC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|22770570|gb|AAN06660.1|AF497232_1 DNA recombinase [Listeria monocytogenes]
 gi|22770572|gb|AAN06661.1|AF497233_1 DNA recombinase [Listeria monocytogenes]
 gi|22770574|gb|AAN06662.1|AF497234_1 DNA recombinase [Listeria monocytogenes]
 gi|22770576|gb|AAN06663.1|AF497235_1 DNA recombinase [Listeria monocytogenes]
 gi|22770578|gb|AAN06664.1|AF497236_1 DNA recombinase [Listeria monocytogenes]
 gi|22770582|gb|AAN06666.1|AF497238_1 DNA recombinase [Listeria monocytogenes]
 gi|22770584|gb|AAN06667.1|AF497239_1 DNA recombinase [Listeria monocytogenes]
 gi|22770586|gb|AAN06668.1|AF497240_1 DNA recombinase [Listeria monocytogenes]
 gi|22770588|gb|AAN06669.1|AF497241_1 DNA recombinase [Listeria monocytogenes]
 gi|46880894|gb|AAT04192.1| recA protein [Listeria monocytogenes serotype 4b str. F2365]
 gi|47018231|gb|EAL08998.1| recA protein [Listeria monocytogenes str. 4b H7858]
 gi|217333725|gb|ACK39519.1| protein RecA [Listeria monocytogenes HCC23]
 gi|225876461|emb|CAS05170.1| Recombination protein recA [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|290556011|gb|EFD89564.1| recA protein [Listeria monocytogenes FSL J2-071]
 gi|293584142|gb|EFF96174.1| recombinase A [Listeria monocytogenes HPB2262]
 gi|293593781|gb|EFG01542.1| recA protein [Listeria monocytogenes FSL J1-194]
 gi|300513527|gb|EFK40598.1| recA protein [Listeria monocytogenes FSL N1-017]
 gi|307570980|emb|CAR84159.1| recombination protein [Listeria monocytogenes L99]
 gi|313608863|gb|EFR84641.1| protein RecA [Listeria monocytogenes FSL F2-208]
          Length = 348

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 195/323 (60%), Positives = 259/323 (80%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+
Sbjct: 3   DRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I
Sbjct: 121 EQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR   +K    + GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYGEGIS  GEL+D+  +  +++KSG+W+S+K +R+GQGR
Sbjct: 241 KIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           EN+K +L+E+ +I + I   +R+
Sbjct: 301 ENAKQYLKEHTDIRDEISKRVRE 323


>gi|31540537|gb|AAP49231.1| RecA [Mycobacterium album]
          Length = 308

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 195/304 (64%), Positives = 254/304 (83%), Gaps = 2/304 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 7   DREKALELAMAQIDKNFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+T
Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG+
Sbjct: 245 RVKIVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304

Query: 311 ENSK 314
           EN++
Sbjct: 305 ENAR 308


>gi|326798002|ref|YP_004315821.1| protein recA [Sphingobacterium sp. 21]
 gi|326548766|gb|ADZ77151.1| Protein recA [Sphingobacterium sp. 21]
          Length = 338

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/343 (62%), Positives = 271/343 (79%), Gaps = 5/343 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+  DK KAL+  L ++++ YGKG IM+LG   S  E I+ +S+GSLGLDIALGIGG PK
Sbjct: 1   MSNQDKLKALQLTLDKLEKSYGKGTIMKLGD--SAVEPIDSISTGSLGLDIALGIGGVPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++EIYGPESSGKTTLA H IA++QK GG  A +DAEHA D  YARKLGVD++NLLISQ
Sbjct: 59  GRVIEIYGPESSGKTTLATHIIAEAQKKGGIAAIIDAEHAFDKYYARKLGVDIENLLISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI D L+RSGA+D+IVIDSVAAL P+ EIEG+MG+S  G+QARLMSQALRKL
Sbjct: 119 PDNGEQALEIADNLIRSGAIDVIVIDSVAALVPKGEIEGEMGDSKMGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T +IS++ C  +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IKD D ++
Sbjct: 179 TGTISKTNCCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRTSQIKDADEVS 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ +VK+VKNK+A PF+  EFDIM+GEGIS  GE+IDLGV  +++ KSG+WFS+   +L
Sbjct: 239 GNRVKVKIVKNKVAPPFRVAEFDIMFGEGISKVGEIIDLGVDFNVIKKSGSWFSYGDTKL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
           GQGR+  K  L +N ++ E +E+ +++   +V+   L+E   N
Sbjct: 299 GQGRDAVKNLLLDNPDLMEELEAKIKE---MVSPEKLEEHNAN 338


>gi|47678156|emb|CAF21841.1| RecA recombinase [Tetragenococcus solitarius]
          Length = 346

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 199/327 (60%), Positives = 261/327 (79%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL +I++ +GKGAIM+LG +    + I  + SGSL LD+ALG+GG+P+GRIV
Sbjct: 4   DRKAALDTALKKIEKNFGKGAIMKLGEKAD--QRISTIPSGSLALDVALGVGGYPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A+ QK GGT AF+DAE+ALD  YA  LGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAVAEVQKQGGTAAFIDAENALDPQYAEHLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+V+DSVAAL PRAEI+G+MG++  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGDAHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFGSPETT GG ALKFYS+VRL++RR   +K    I GN+T
Sbjct: 182 NKTKTIALFINQIREKVGVMFGSPETTPGGRALKFYSTVRLEVRRAEQLKSGTDIIGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYGEGIS  GEL+D+ V+  I++KSGAW+S+K +R+GQGR
Sbjct: 242 KLKVVKNKVAPPFKIAEVDIMYGEGISQVGELLDMAVEKDIINKSGAWYSYKEERIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K +++E  E+   I +L+R   G+
Sbjct: 302 ENAKKYMKERPEMVAEISTLVRTAFGI 328


>gi|22770568|gb|AAN06659.1|AF497231_1 DNA recombinase [Listeria monocytogenes]
          Length = 348

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 195/323 (60%), Positives = 259/323 (80%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+
Sbjct: 3   DRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I
Sbjct: 121 EQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR   +K    + GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEXLKQGTDVMGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYGEGIS  GEL+D+  +  +++KSG+W+S+K +R+GQGR
Sbjct: 241 KIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           EN+K +L+E+ +I + I   +R+
Sbjct: 301 ENAKQYLKEHTDIRDEISKRVRE 323


>gi|326803744|ref|YP_004321562.1| RecA protein [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651270|gb|AEA01453.1| RecA protein [Aerococcus urinae ACS-120-V-Col10a]
          Length = 371

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/353 (58%), Positives = 269/353 (76%), Gaps = 11/353 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL QI++ +GKGAIM++G   S    +  V SGSL LDIALG+GG+P+GRI+
Sbjct: 8   NRQKALDQALKQIEKNFGKGAIMKMGE--STDTQVSTVPSGSLSLDIALGVGGYPRGRII 65

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A+ QK GG  AF+DAE+ALD  YAR LGVD+  LL+SQPDTG
Sbjct: 66  EVYGPESSGKTTVALHAVAEVQKQGGIAAFIDAENALDPEYARALGVDIDELLLSQPDTG 125

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGA+DI+V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL+ SI
Sbjct: 126 EQGLEIADALVSSGAIDIVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGSI 185

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK    I GN+T
Sbjct: 186 NKTKTIAMFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRGERIKSGQDIIGNRT 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GEL+DL     I+ KSG+W+S+   R+GQGR
Sbjct: 246 KIKVVKNKVAPPFKVAEVDIMYGQGISQAGELVDLAADMDIIKKSGSWYSYGDDRIGQGR 305

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           EN+K++L EN +I + I+S +R   G         PA+  +DD  +D+T N E
Sbjct: 306 ENAKLYLTENPDIFKEIDSKVRAEYGF-------GPAV--EDDDSEDETTNEE 349


>gi|328466107|gb|EGF37274.1| recombinase A [Listeria monocytogenes 1816]
          Length = 348

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 195/323 (60%), Positives = 259/323 (80%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+
Sbjct: 3   DRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I
Sbjct: 121 EQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR   +K    + GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYGEGIS  GEL+D+  +  +++KSG+W+S+K +R+GQGR
Sbjct: 241 KIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           EN+K +L+E+ +I + I   +R+
Sbjct: 301 ENAKQYLKEHTDIRDEISKRVRE 323


>gi|227499297|ref|ZP_03929409.1| recombination protein A [Anaerococcus tetradius ATCC 35098]
 gi|227218648|gb|EEI83882.1| recombination protein A [Anaerococcus tetradius ATCC 35098]
          Length = 345

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 207/330 (62%), Positives = 259/330 (78%), Gaps = 3/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+ A   I++ YGKGAIM++G    +   +  + +G++ LDIALGIGG P+GR++
Sbjct: 4   EKQKALDQAFKNIEKKYGKGAIMKMGDAPRV--SVSAIPTGAVNLDIALGIGGIPRGRVI 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTLALH +A+ QK   TCAF+DAEHALD+ YA  LGVD+ NL++SQPDTG
Sbjct: 62  EIFGPESSGKTTLALHIVAEDQKQDQTCAFIDAEHALDAEYAENLGVDIDNLILSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ L+I + LVRSGAVD+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALR+LT  I
Sbjct: 122 EQGLDIAESLVRSGAVDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRRLTGVI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++S   ++FINQ+R K+GVMFGSPETT GG ALKFYSSVRLDIRR+ +I   D   G++T
Sbjct: 182 AKSNTTVIFINQLREKVGVMFGSPETTPGGRALKFYSSVRLDIRRIKTITQGDDSIGSRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK VEFDIMYG+GIS  G L+D  V  +IVDK+G+WFS+K ++LGQGR
Sbjct: 242 RVKVVKNKVAPPFKVVEFDIMYGKGISKSGVLLDTAVDLNIVDKAGSWFSYKDEKLGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           EN K +L  N EI   I+S +R N   VAD
Sbjct: 302 ENVKDYLEANPEIMAQIDSDVR-NTIQVAD 330


>gi|291532875|emb|CBL05988.1| RecA protein [Megamonas hypermegale ART12/1]
          Length = 347

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/327 (63%), Positives = 269/327 (82%), Gaps = 1/327 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+ +DK +ALE+AL QI+R +GKG+IM+LG   +    IEV+ +G L LD ALG+GG P+
Sbjct: 1   MDKMDKVQALESALKQIERDFGKGSIMKLGDVSANMN-IEVIHTGCLPLDAALGVGGVPR 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEI+GPESSGKTT+ALH +A++QKTGG  AF+DAEHALD +YA+KLGVD+ NLLISQ
Sbjct: 60  GRIVEIFGPESSGKTTVALHIVAEAQKTGGVAAFIDAEHALDPVYAKKLGVDIDNLLISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI D LVRSGA+D++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQA+RKL
Sbjct: 120 PDNGEQALEIADALVRSGAIDVVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQAMRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T  IS+S+   +FINQ+R K+GVMFG+PETTTGG ALKFY+S+RLD+R++ +IK  +   
Sbjct: 180 TGIISKSRTTAIFINQIREKVGVMFGNPETTTGGRALKFYASIRLDVRKIDTIKQGNDPV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G++TR+KVVKNK+A PFKQ EFDIMYGEGIS  G LID+G    I+DKSG W+S++G RL
Sbjct: 240 GSRTRIKVVKNKVAPPFKQAEFDIMYGEGISREGSLIDMGTAFEILDKSGTWYSYQGTRL 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333
           GQG+EN K +L+E+ + A  IE+ +R+
Sbjct: 300 GQGKENVKAYLKEHADTALEIENKIRE 326


>gi|31540539|gb|AAP49232.1| RecA [Mycobacterium album]
          Length = 308

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 194/304 (63%), Positives = 254/304 (83%), Gaps = 2/304 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 7   DREKALELAMAQIDKNFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVI 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+T
Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG+
Sbjct: 245 RVKIVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304

Query: 311 ENSK 314
           EN++
Sbjct: 305 ENAR 308


>gi|261879852|ref|ZP_06006279.1| recombination protein A [Prevotella bergensis DSM 17361]
 gi|270333511|gb|EFA44297.1| recombination protein A [Prevotella bergensis DSM 17361]
          Length = 350

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 193/320 (60%), Positives = 262/320 (81%), Gaps = 2/320 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+AA+S+I++ +GKGAIM++G +    E ++V+ +GS+GLD+ALG+GG+P+GR++E
Sbjct: 23  KLKALQAAMSKIEKDFGKGAIMRMGDEN--VEPVDVIPTGSIGLDVALGVGGYPRGRVIE 80

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D +YA++LGVD+ NL ISQPD GE
Sbjct: 81  IYGPESSGKTTLAIHAIAEAQKLGGIAAFIDAEHAFDRVYAQQLGVDVDNLWISQPDNGE 140

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL+I D L+ S AVDI+VIDSVAALTP+ EI+G+MG+S+ G+QARLMSQALRKLTS+I+
Sbjct: 141 QALQIADQLISSSAVDILVIDSVAALTPKKEIDGEMGDSMLGLQARLMSQALRKLTSTIA 200

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIG+ FG  ETTTGGNALKFY+SVRLDIR+  S+KD D + GN+ +
Sbjct: 201 KTNTCCIFINQLREKIGMTFGPTETTTGGNALKFYASVRLDIRKSTSLKDGDRVYGNRAK 260

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV KNK+A PF + EFDI+YG+GI+  GE++DLGV+  I+ KSG+W+S+   +L QGR+
Sbjct: 261 VKVAKNKVAPPFLRAEFDILYGQGINKVGEILDLGVEYDIIKKSGSWYSYNDSKLAQGRD 320

Query: 312 NSKIFLRENIEIAENIESLL 331
            S   LR+N E++E +E L+
Sbjct: 321 ASMAILRDNPELSEELEKLI 340


>gi|302342574|ref|YP_003807103.1| recA protein [Desulfarculus baarsii DSM 2075]
 gi|301639187|gb|ADK84509.1| recA protein [Desulfarculus baarsii DSM 2075]
          Length = 362

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/339 (61%), Positives = 273/339 (80%), Gaps = 3/339 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           KE  +  + KA++AAL QI+R +G+GAIM+LGS G     ++ +S+GSLGLD+A G+GG 
Sbjct: 4   KETEVQTREKAMDAALKQIERSFGRGAIMRLGS-GEALRDVQAISTGSLGLDLATGVGGV 62

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GR+ EIYGPESSGKTTLALH IA++QK GG  AF+DAEHALD  YAR+LGV++ +LL+
Sbjct: 63  PRGRVTEIYGPESSGKTTLALHVIAEAQKLGGVAAFIDAEHALDISYARRLGVNVDDLLV 122

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQAL+I ++LVRSGAVD++VIDSVAAL PRAE+EG+MG+S  G+QARLMSQA+R
Sbjct: 123 SQPDTGEQALDIAEILVRSGAVDVLVIDSVAALVPRAELEGEMGDSHVGLQARLMSQAMR 182

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLTS IS+S   ++FINQ+RMKIGVMFG+PETTTGGNALKFY+S+RLDIR    IKD + 
Sbjct: 183 KLTSVISKSNTAVIFINQIRMKIGVMFGNPETTTGGNALKFYASLRLDIRSNSKIKDGEE 242

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
             G + +VKVVKNK+A PF+  EFD+++G GI+  GELID+GV   +V KSGAW+S+  +
Sbjct: 243 EIGRRVKVKVVKNKVAPPFRLAEFDVIFGMGINRLGELIDIGVNHDVVTKSGAWYSYGDE 302

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQN--AGLVADS 341
           RLGQGREN+   LREN ++A +I+  LR     G+VA++
Sbjct: 303 RLGQGRENACNHLRENPDLAADIDKRLRAKLGVGMVAET 341


>gi|148927934|ref|ZP_01811340.1| recA protein [candidate division TM7 genomosp. GTL1]
 gi|147886723|gb|EDK72287.1| recA protein [candidate division TM7 genomosp. GTL1]
          Length = 343

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 204/321 (63%), Positives = 257/321 (80%), Gaps = 3/321 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL  A+ QI + +G G+IM+LG   S    +E++ SG+L LDIALG GG+PKGR++E
Sbjct: 18  KLKALGLAVEQITKQFGDGSIMKLGE--SHRAHVELIPSGALSLDIALG-GGYPKGRVIE 74

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA+ QK GGT AF+DAEHALD  YA+KLGVD  NLL+SQPD GE
Sbjct: 75  IYGPESSGKTTLTLHAIAEVQKKGGTAAFIDAEHALDPAYAKKLGVDTDNLLVSQPDNGE 134

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI + LVRS AVD+IV+DSVAAL P+AEI+G+MG+S  G+QARLMSQALRKLT  IS
Sbjct: 135 QALEIAETLVRSNAVDLIVVDSVAALVPQAEIDGEMGDSHMGLQARLMSQALRKLTGIIS 194

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +SK  ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G IK  + + GN+T+
Sbjct: 195 KSKATVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGQIKVGEDVIGNRTK 254

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A+PF+  EFDIMY EGIS  G+++DL V+  I+ KSGAWF +K  ++GQGRE
Sbjct: 255 VKVVKNKIAAPFRVAEFDIMYNEGISKTGDVLDLAVQHGIIGKSGAWFDYKDAKIGQGRE 314

Query: 312 NSKIFLRENIEIAENIESLLR 332
            +K +L++  ++   +E  +R
Sbjct: 315 ATKKYLKDEPKVMAEVEQKVR 335


>gi|47678128|emb|CAF21827.1| RecA recombinase [Enterococcus avium]
          Length = 349

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 199/327 (60%), Positives = 262/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AA+ +I++ YGKG+IM+LG +  + + I  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKAALDAAMKKIEKNYGKGSIMKLGEK--VDQQISTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA++LGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKHGGTAAFIDAEHALDPQYAQRLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDIIVIDSVAAL PRAEI+G+MG++  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIIVIDSVAALVPRAEIDGEMGDAHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I VFINQ+R K+GVMFG+PETT GG ALKFY++VRL++RR   +K+   I GN+T
Sbjct: 182 NKTKTIAVFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKNGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG GIS  GEL+D+ V+  IVDKSGAW+ +K  R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGFGISQEGELLDMAVEQDIVDKSGAWYGYKEDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K +L ++ E+   + + +R   G+
Sbjct: 302 ENAKKYLADHPEMMAEVATRVRAAYGI 328


>gi|47571288|gb|AAT35801.1| RecA [Mycobacterium gastri]
 gi|47571290|gb|AAT35802.1| RecA [Mycobacterium kansasii ATCC 12478]
          Length = 304

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 194/301 (64%), Positives = 252/301 (83%), Gaps = 2/301 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 6   DREKALELAMAQIEKSYGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+T
Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK++ PFKQ EFDI+YG+GIS  G LID+GV    + KSGAWF+++G++LGQG+
Sbjct: 244 RVKIVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVDQGFIRKSGAWFTYEGEQLGQGK 303

Query: 311 E 311
           E
Sbjct: 304 E 304


>gi|154491113|ref|ZP_02031054.1| hypothetical protein PARMER_01035 [Parabacteroides merdae ATCC
           43184]
 gi|154088533|gb|EDN87577.1| hypothetical protein PARMER_01035 [Parabacteroides merdae ATCC
           43184]
          Length = 347

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 207/322 (64%), Positives = 264/322 (81%), Gaps = 2/322 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            DK KAL AA+ +I++ YGKG+IM+LG +    E IEV+ +GS+ L+ ALG+GG+PKGR+
Sbjct: 22  ADKLKALRAAMDKIEKNYGKGSIMKLGDES--VENIEVIPTGSIALNAALGVGGYPKGRV 79

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD++NL ISQPD 
Sbjct: 80  IEIYGPESSGKTTLAIHAIAEAQKNGGIAAFIDAEHAFDRFYAEKLGVDVENLWISQPDN 139

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + L+RS AVDIIVIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT++
Sbjct: 140 GEQALEIAEQLIRSSAVDIIVIDSVAALTPKAEIEGDMGDSKMGLQARLMSQALRKLTAA 199

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I+++    +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR +G +KD D I GNQ
Sbjct: 200 INKTNTTCIFINQLRDKIGVMFGNPETTTGGNALKFYASVRLDIRSIGKLKDGDDIKGNQ 259

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            RVKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG + +I+ KSG+W+S+   +LGQG
Sbjct: 260 VRVKVVKNKVAPPFRKAEFDIMFGEGISKAGEIIDLGAELNIIKKSGSWYSYNDTKLGQG 319

Query: 310 RENSKIFLRENIEIAENIESLL 331
           R+ +K  + +N E+A+ +  L+
Sbjct: 320 RDAAKQCVADNPELADELSDLI 341


>gi|225021200|ref|ZP_03710392.1| hypothetical protein CORMATOL_01212 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305680852|ref|ZP_07403659.1| protein RecA [Corynebacterium matruchotii ATCC 14266]
 gi|224945933|gb|EEG27142.1| hypothetical protein CORMATOL_01212 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305659057|gb|EFM48557.1| protein RecA [Corynebacterium matruchotii ATCC 14266]
          Length = 374

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/359 (57%), Positives = 268/359 (74%), Gaps = 13/359 (3%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+ KAL+ AL QI++ +GKGA+M+LG        I  +SSG+  +D+ALGIGGFP+GR
Sbjct: 14  VNDRQKALDTALEQIEKDFGKGAVMRLGDDNR--PPISAISSGNTAIDVALGIGGFPRGR 71

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEIYGPESSGKTT+ALH IA +Q+ GG  AF+DAEHALD  YARKLGVD   LL+SQPD
Sbjct: 72  IVEIYGPESSGKTTVALHAIASAQREGGIAAFIDAEHALDPEYARKLGVDTDALLVSQPD 131

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GEQALEI DML+RSGA+D+IV+DSVAALTP+AEIEGDMG+S  G+QARLMSQALRK+T 
Sbjct: 132 HGEQALEIADMLIRSGAIDLIVVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKMTG 191

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           ++  S    +FINQ+R KIGVMFGSPETTTGG ALKFY++VR D+RR  ++KD     GN
Sbjct: 192 ALHNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYATVRCDVRRTQTLKDGQDAIGN 251

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK++ PFK  EFDI+YGEGIS    LID+GV   I+ KSG+WF+++G +LGQ
Sbjct: 252 RTKLKVVKNKVSPPFKIAEFDIVYGEGISRESTLIDMGVDNGIIKKSGSWFTYEGDQLGQ 311

Query: 309 GRENSKIFLRENIEIAENIES--LLRQNAGLVA---------DSLLQEPAINTKDDADK 356
           G+E  ++ L+   E+A+ IE   L +   G  A         DS+   P ++  D+AD+
Sbjct: 312 GKEKVRMLLKNTPELADEIEEKILKKLKVGKYANLPDEETTNDSVDSVPDVDFDDNADE 370


>gi|303239936|ref|ZP_07326458.1| recA protein [Acetivibrio cellulolyticus CD2]
 gi|302592415|gb|EFL62141.1| recA protein [Acetivibrio cellulolyticus CD2]
          Length = 350

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/326 (61%), Positives = 268/326 (82%), Gaps = 2/326 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           +++K KALE AL QI++ +GKGA+M+LG    +   +E + +G++GLDIALG+GG P+GR
Sbjct: 1   MIEKKKALEMALGQIEKQFGKGAVMKLGENTHM--NVETIPTGAMGLDIALGVGGVPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVE++GPESSGKTT+ALH IA++QK GG  AF+DAEHALD +YA+KLGV++ NL++SQPD
Sbjct: 59  IVEVFGPESSGKTTVALHIIAEAQKAGGEAAFIDAEHALDPVYAKKLGVNIDNLIVSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGA+D+IVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAIDVIVIDSVAALVPKAEIDGEMGDSHIGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            IS+SK   +FINQ+R K+G+MFG+PETT GG ALKFY+SVRLD+RR+ SIK    + GN
Sbjct: 179 VISKSKTTAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRRIESIKQGTEVIGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T+VKVVKNK+A PFK+ EFDI+YG+GIS  G ++D+ V   IV+KSGAWF++  Q++GQ
Sbjct: 239 RTKVKVVKNKVAPPFKEAEFDIIYGKGISKEGSILDVAVSLDIVNKSGAWFAYNNQKIGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQN 334
           GREN+K FL EN  I   I++ +R+N
Sbjct: 299 GRENAKQFLMENTAIMSEIDAKIREN 324


>gi|291522145|emb|CBK80438.1| protein RecA [Coprococcus catus GD/7]
          Length = 363

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/334 (64%), Positives = 273/334 (81%), Gaps = 1/334 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+  +K KAL+AA+S+I++ +GKGAIM+LG +    + +E V +GSL LD+ALG+GG PK
Sbjct: 1   MDNSEKLKALDAAISKIEKDFGKGAIMKLGDKSKNMD-VETVPTGSLSLDLALGLGGLPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTT+ LH +A+ QK GG   F+DAEHALD  YAR++GVD+ NL ISQ
Sbjct: 60  GRVVEIYGPESSGKTTVTLHMVAEVQKRGGIAGFIDAEHALDPSYARRIGVDIDNLYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT+M+VRSGAVDIIV+DSVAAL P+AEI+GDMG+S  G+QARLMSQALRKL
Sbjct: 120 PDNGEQALEITEMMVRSGAVDIIVVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+ IS+S CI++FINQ+R K+GVMFGSPETTTGG ALKFYSS+R+DIRR+ +IK    I 
Sbjct: 180 TAIISKSNCIVIFINQLREKVGVMFGSPETTTGGRALKFYSSIRMDIRRIEAIKQGGEIV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFK+ EFDIM+G+GIS  G+++DL     IV+KSGAW+S+   ++
Sbjct: 240 GNRTRVKVVKNKVAPPFKEAEFDIMFGKGISREGDILDLAANTGIVNKSGAWYSYNDAKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           GQGREN+K + REN EI E IE  +R + GL A+
Sbjct: 300 GQGRENTKNYFRENPEIMEEIEHKVRAHFGLEAE 333


>gi|296274479|ref|YP_003657110.1| recombination protein RecA [Arcobacter nitrofigilis DSM 7299]
 gi|296098653|gb|ADG94603.1| recA protein [Arcobacter nitrofigilis DSM 7299]
          Length = 346

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 205/328 (62%), Positives = 268/328 (81%), Gaps = 3/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ K+LE A+ QI + +GKG++++LG + ++   +E +S+GSLGLD+ALG+GG PKGR++
Sbjct: 4   NQKKSLELAIKQIDKAFGKGSLVRLGDKETV--PVESISTGSLGLDLALGVGGLPKGRVI 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ Q+ GG CAF+DAEHALD IYA+ LGVD  NLL+SQPD G
Sbjct: 62  EIYGPESSGKTTLTLHAIAECQRQGGVCAFIDAEHALDVIYAKNLGVDTDNLLVSQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + ++RSGAVD+IVIDSVAALTP+ EI+GDM +   G+QARLMS+ALRK+T  +
Sbjct: 122 EQALEILETVIRSGAVDLIVIDSVAALTPKVEIDGDMDDQQVGVQARLMSKALRKITGIL 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +  C ++FINQ+RMKIG+  +GSPETTTGGNALKFYSS+RLDIRR+ ++K  ++  GN+
Sbjct: 182 HKMNCTVIFINQIRMKIGMTGYGSPETTTGGNALKFYSSIRLDIRRIATLKQAENSIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PFKQ EFDIM+GEGIS  GEL+D GVK  IVDK+GAWFS+   ++GQG
Sbjct: 242 VKVKVVKNKVAPPFKQAEFDIMFGEGISKMGELVDYGVKLDIVDKAGAWFSYNDSKIGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           +ENSK+FLREN EIA+ IE  + +  G+
Sbjct: 302 KENSKVFLRENPEIAKEIEDKILEAMGV 329


>gi|116333847|ref|YP_795374.1| recombinase A [Lactobacillus brevis ATCC 367]
 gi|122269466|sp|Q03R29|RECA_LACBA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|116099194|gb|ABJ64343.1| RecA protein [Lactobacillus brevis ATCC 367]
          Length = 377

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/347 (57%), Positives = 269/347 (77%), Gaps = 2/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++  AL+ AL +I++ +GKG+IM+LG   ++   +E V SGSL LD+ALG+GG+P+GRIV
Sbjct: 4   ERQAALDKALKKIEKDFGKGSIMRLGDNSNLE--VETVPSGSLALDVALGVGGYPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  YA  LGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPAYATALGVNIDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 122 EQGLQIADALISSGAIDIVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY++VRL++RR   IKD   + GN+T
Sbjct: 182 NKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQIKDGTDVIGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PFK+ E DIMYG+GIS  GEL+D+ V+  IVDKSG+W+S+   R+GQGR
Sbjct: 242 RIKVVKNKVAPPFKRAEVDIMYGQGISQTGELLDMAVEKDIVDKSGSWYSYGEDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           EN+K +L ++ ++   +   +R   G+  +      A  TK DA KD
Sbjct: 302 ENAKQYLADHPDMMAEVNQRVRAAYGVGDEEAAATKATETKTDAPKD 348


>gi|31540557|gb|AAP49241.1| RecA [Mycobacterium peregrinum]
          Length = 308

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 196/304 (64%), Positives = 253/304 (83%), Gaps = 2/304 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 7   DREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRVV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+T
Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI++G GIS  G LID+GV+   + KSG+WF+++G++LGQG+
Sbjct: 245 RVKVVKNKVSPPFKQAEFDILFGRGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304

Query: 311 ENSK 314
           EN++
Sbjct: 305 ENAR 308


>gi|47678150|emb|CAF21838.1| RecA recombinase [Enterococcus raffinosus]
          Length = 349

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/327 (60%), Positives = 262/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AA+ +I++ YGKG+IM+LG +  + + I  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKAALDAAMKKIEKNYGKGSIMKLGEK--VDQQISTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA++LGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKHGGTAAFIDAEHALDPQYAQRLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDIIVIDSVAAL PRAEI+G+MG++  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIIVIDSVAALVPRAEIDGEMGDAHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I VFINQ+R K+GVMFG+PETT GG ALKFY++VRL++RR   +K+   I GN+T
Sbjct: 182 NKTKTIAVFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKNGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG GIS  GEL+D+ V+  I+DKSGAW+ +K  R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGLGISQEGELLDMAVEQDIIDKSGAWYGYKEDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K +L ++ E+   + + +R   G+
Sbjct: 302 ENAKKYLADHPEMMAEVATRVRAAYGI 328


>gi|239933503|ref|ZP_04690456.1| recombinase A [Streptomyces ghanaensis ATCC 14672]
 gi|291441874|ref|ZP_06581264.1| RecA [Streptomyces ghanaensis ATCC 14672]
 gi|291344769|gb|EFE71725.1| RecA [Streptomyces ghanaensis ATCC 14672]
          Length = 343

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/329 (60%), Positives = 263/329 (79%), Gaps = 2/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ +ALE AL QI++ +GKG++M LG     +  IEV+ +GS+ LD+ALGIGG P+GRIV
Sbjct: 5   DRERALELALIQIEKRFGKGSVMCLGD--DPWSSIEVIPTGSIALDVALGIGGLPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPE+SGKTTLALH +A +Q+ GGT AF+DAE+ LD+ YA++LGVD+  LL+ QPD G
Sbjct: 63  EIYGPEASGKTTLALHAVANAQRAGGTVAFIDAEYGLDTEYAKRLGVDVDALLVCQPDNG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL+I D L+RS A+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+ S++
Sbjct: 123 EQALQIADTLIRSAALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKIASAL 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S   ++FINQ+R KIGVMFGSPETT GG ALKFY+SVRLD+RR+ ++K+     GN+T
Sbjct: 183 GQSGTTMIFINQLREKIGVMFGSPETTPGGRALKFYASVRLDVRRIETLKNGTEAVGNRT 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV KNK A PFKQ EFDI+YGEGIS  G LIDLG++   + KSGAW++++G RLGQG+
Sbjct: 243 RVKVAKNKCAPPFKQAEFDILYGEGISREGGLIDLGMEHGFLYKSGAWYAYEGDRLGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           EN++ F ++N ++A+ IE  +++  G+ A
Sbjct: 303 ENARNFFKDNPDLADEIEKKIKEKLGIGA 331


>gi|281210244|gb|EFA84411.1| recombinase A [Polysphondylium pallidum PN500]
          Length = 453

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/354 (57%), Positives = 271/354 (76%), Gaps = 6/354 (1%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           S  LE+ +++I++ +GKG +M+LG+  +  + ++V+SSGSLGLD+ALGIGG PKGRI+EI
Sbjct: 92  SSQLESTMAEIEKTFGKGTLMKLGTSFAT-QKVDVISSGSLGLDVALGIGGLPKGRIIEI 150

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           +GPESSGKTTLALH IAQ+QK GG C F+DAEHAL+  +A+KLGV+L  L ISQPD+GEQ
Sbjct: 151 FGPESSGKTTLALHVIAQAQKAGGNCTFIDAEHALNPSWAQKLGVNLDELFISQPDSGEQ 210

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEI D L+RS  + +IV+DSVAAL PR E+EG+MG+S  G+QARLMSQALRKL+ ++  
Sbjct: 211 ALEIVDSLLRSKTMQVIVVDSVAALVPRVELEGEMGDSHVGVQARLMSQALRKLSPNLKE 270

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           S CIL+FINQ+RMKIGVMFG+PETTTGGNALKF+SS+RLDIR++G++K  +    +Q RV
Sbjct: 271 SNCILIFINQIRMKIGVMFGNPETTTGGNALKFFSSIRLDIRKIGAVKKGEEAIASQVRV 330

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KV KNK+A PF++  FDI +  GI+  GE+ID+ V   I++K G+W+S+  Q+L QGRE 
Sbjct: 331 KVAKNKLAPPFREAVFDIDFVSGINKTGEIIDMAVTEGIIEKGGSWYSYNQQQLAQGREK 390

Query: 313 SKIFLRENIEIAENIESLLRQN--AGLVADSLLQEPAINTKDDADKD---DTDN 361
           +K +L +N E+   IES LRQ     +V  S L +   + KD+ D D   D+DN
Sbjct: 391 TKQYLEDNQELLNEIESKLRQRLVKSVVPTSKLNDNNEDYKDEYDHDVDGDSDN 444


>gi|255321321|ref|ZP_05362483.1| protein RecA [Campylobacter showae RM3277]
 gi|255301640|gb|EET80895.1| protein RecA [Campylobacter showae RM3277]
          Length = 366

 Score =  419 bits (1076), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/357 (59%), Positives = 276/357 (77%), Gaps = 7/357 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  DK KAL+AAL QI + +GKG +++LG +    E I+ +S+GSLGLD+ALGIGG PKG
Sbjct: 15  NDSDKKKALDAALKQIDKAFGKGTLIRLGDKQ--VEAIDSISTGSLGLDLALGIGGIPKG 72

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+E+YGPESSGKTTL LH IA++QK G TCAF+DAEHALD  YA  LGVD +NL +SQP
Sbjct: 73  RIIEVYGPESSGKTTLTLHIIAEAQKAGATCAFIDAEHALDVKYAANLGVDTENLYVSQP 132

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI + L RSGAV++IV+DSVAALTP++EIEGDMG+   G+QARLMSQALRKL 
Sbjct: 133 DFGEQALEIVENLARSGAVELIVVDSVAALTPKSEIEGDMGDQHVGLQARLMSQALRKLA 192

Query: 188 SSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
             + +    ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R++ ++K  +   
Sbjct: 193 GVVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKIATLKQNEEPI 252

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+T+VKVVKNK+A PFK  EFDIM+GEGIS  GE+ID GVK  I+DKSGAWFS+K  ++
Sbjct: 253 GNRTKVKVVKNKVAPPFKTAEFDIMFGEGISRDGEIIDYGVKLDIIDKSGAWFSYKAAKI 312

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           GQGREN+K +L+E+ EI++ I + ++ + GL  D L+       KD  D+   +N E
Sbjct: 313 GQGRENAKAYLKEHPEISDEIVATIKSSIGL--DKLIS--GAGGKDSDDESIEENTE 365


>gi|260888185|ref|ZP_05899448.1| protein RecA [Selenomonas sputigena ATCC 35185]
 gi|330838472|ref|YP_004413052.1| recA protein [Selenomonas sputigena ATCC 35185]
 gi|260862019|gb|EEX76519.1| protein RecA [Selenomonas sputigena ATCC 35185]
 gi|329746236|gb|AEB99592.1| recA protein [Selenomonas sputigena ATCC 35185]
          Length = 361

 Score =  419 bits (1076), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 196/323 (60%), Positives = 256/323 (79%), Gaps = 1/323 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +D+ +AL+ AL  I++ +GKG+IM+LG + S    +E + +G L LD+ALG+GG P+GRI
Sbjct: 1   MDREEALKNALKHIEKEFGKGSIMRLG-EASANMNVETIPTGILPLDVALGVGGLPRGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VE+YGPESSGKTT+ LH IA+ QK GG  AF+DAEHALD +YA+KLGV++  LLISQPDT
Sbjct: 60  VEVYGPESSGKTTVTLHMIAEVQKNGGIAAFIDAEHALDPVYAKKLGVNIDELLISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQAL+I D LVRSGA+DIIV+DSVAAL P+AEI+GDMG+ + GM ARLMS+A+RKLT  
Sbjct: 120 GEQALDIVDALVRSGAIDIIVVDSVAALVPKAEIDGDMGDQVVGMHARLMSRAMRKLTGF 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S+ + VFINQ+R K+GVMFGSPETTTGG ALKFYS+VRLD+R+   I     + GN+
Sbjct: 180 ISKSRTVAVFINQIREKVGVMFGSPETTTGGRALKFYSTVRLDVRKTDKIMQGQEMIGNR 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           T+V+VVKNK+A PFK  EFDIMYGEG+S  G ++D+     I++KSG+W+S+ G RLGQG
Sbjct: 240 TKVRVVKNKVAPPFKTAEFDIMYGEGVSRVGTVLDIATDFDIIEKSGSWYSYNGSRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLR 332
           +EN+K  L+E  E+A  IE  +R
Sbjct: 300 KENAKKALKEKPELAAEIEEKVR 322


>gi|282880395|ref|ZP_06289106.1| RecA protein [Prevotella timonensis CRIS 5C-B1]
 gi|281305751|gb|EFA97800.1| RecA protein [Prevotella timonensis CRIS 5C-B1]
          Length = 342

 Score =  419 bits (1076), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/322 (63%), Positives = 266/322 (82%), Gaps = 2/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+AA+++I++ +GKG+IM++G +    E +EV+ +GS+ LD ALG+GG+P+GRI+E
Sbjct: 15  KLKALQAAMAKIEKDFGKGSIMRMGDEQ--IEDVEVIPTGSIALDCALGVGGYPRGRIIE 72

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD GE
Sbjct: 73  IYGPESSGKTTLAIHAIAETQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDNGE 132

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RS A+DI+VIDSVAALTP+ EI+GDMG+S  G+QARLMSQALRKLTS+IS
Sbjct: 133 QALEIADQLIRSSAIDILVIDSVAALTPKKEIDGDMGDSNVGLQARLMSQALRKLTSNIS 192

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGVMFGSPETTTGGNALKFY+SVRLDIR+V S+KD D + GNQ R
Sbjct: 193 KTNTTCIFINQLREKIGVMFGSPETTTGGNALKFYASVRLDIRKVTSLKDGDQVVGNQVR 252

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF++ EF+I +GEGIS  GE++DLGV+  I+ KSG+W+S++  +L QGR+
Sbjct: 253 VKVVKNKVAPPFRKAEFEITFGEGISKIGEIVDLGVEYDIIKKSGSWYSYQDSKLAQGRD 312

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
            +K  L++N E+ E +E+ ++Q
Sbjct: 313 ATKKLLKDNPELCEELEAQIKQ 334


>gi|242309390|ref|ZP_04808545.1| protein recA [Helicobacter pullorum MIT 98-5489]
 gi|239523961|gb|EEQ63827.1| protein recA [Helicobacter pullorum MIT 98-5489]
          Length = 345

 Score =  419 bits (1076), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/349 (61%), Positives = 277/349 (79%), Gaps = 10/349 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KA+E A+ QI + +GKGA+++LG +    E I+ +S+GSLGLDIALGIGG PKGRI+
Sbjct: 6   NKQKAIELAIKQIDKAFGKGALIRLGDKP--VEKIDSISTGSLGLDIALGIGGIPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLAL  +A+ QK GG CAF+DAEHALD  YA++LGVD++NLL+SQPD G
Sbjct: 64  EIYGPESSGKTTLALQIVAECQKKGGICAFIDAEHALDVTYAKRLGVDVENLLVSQPDFG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L RSG VD+I++DSVAALTP++EIEGDMG+   G+QARLMSQALRK+T  I
Sbjct: 124 EQALEILETLTRSGGVDLIIVDSVAALTPKSEIEGDMGDQHVGLQARLMSQALRKVTGII 183

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIGVM +GSPETTTGGNALKFY+SVR+D+RR+ ++K  +   GN+
Sbjct: 184 HKMNTTVIFINQIRMKIGVMGYGSPETTTGGNALKFYASVRIDVRRIATLKQGEQNIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF+  EFDIM+GEGIS  GELID GVK  IVDKSGAWFS++ ++LGQG
Sbjct: 244 VKAKVVKNKVAPPFRGAEFDIMFGEGISKEGELIDYGVKLDIVDKSGAWFSYEDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           +EN+KIFL+EN +IA+ IE  ++ +  L  D       +++ DD + +D
Sbjct: 304 KENAKIFLKENPQIAQEIEDKIKASISLTDD-------LSSSDDENLED 345


>gi|325479365|gb|EGC82461.1| RecA protein [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 353

 Score =  419 bits (1076), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 207/348 (59%), Positives = 267/348 (76%), Gaps = 4/348 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+ A   I++ YGKGAIM++G    I   +  + +G++ LD+ALG+GG P+GR++
Sbjct: 4   EKQKALDQAFKNIEKKYGKGAIMKMGEAPKI--SVSAIPTGAVNLDMALGVGGIPRGRVI 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTLALH +A+ QK   TCAF+DAEHALD+ YA+ LGVD+ NL++SQPDTG
Sbjct: 62  EIFGPESSGKTTLALHIVAEDQKEDQTCAFIDAEHALDAEYAKNLGVDIDNLILSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ L+I + LVRSGAVD+IV+DSVAAL P+AEIEG+MG S  G+QARLMSQALR+LT  I
Sbjct: 122 EQGLDIAESLVRSGAVDLIVVDSVAALVPKAEIEGEMGASHVGLQARLMSQALRRLTGVI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++S   ++FINQ+R K+GVMFG+PETT GG ALKFYSSVRLDIRR+ +I   D   G++T
Sbjct: 182 AKSNTTVIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDIRRLKTITQGDESIGSRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK VEFDIMYG+GIS  G L+D  V   +VDK+G+WFS+K ++LGQGR
Sbjct: 242 RVKVVKNKVAPPFKVVEFDIMYGQGISKSGVLLDTAVDLDVVDKAGSWFSYKDEKLGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ--NAGLVADSLLQEPAINTKDDADK 356
           E  K +L EN E+A  IE+ +R   NA    D   +E + +TKD  DK
Sbjct: 302 EKVKDYLEENPELASQIEADVRATINAKDDEDESNEEDSKDTKDTEDK 349


>gi|328957009|ref|YP_004374395.1| recombinase A [Carnobacterium sp. 17-4]
 gi|328673333|gb|AEB29379.1| recombinase A [Carnobacterium sp. 17-4]
          Length = 347

 Score =  418 bits (1075), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/327 (60%), Positives = 258/327 (78%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ +AL+AAL +I++ +GKG++M+LG +  +   I  V SGSL LD+ALG+GGFP+GRI+
Sbjct: 4   DRKQALDAALKKIEKNFGKGSVMKLGEK--VDTRISTVPSGSLALDVALGVGGFPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A+ QK GG  AF+DAE+ALD  YA  LGVD+  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAVAEVQKQGGIAAFIDAENALDPKYAAALGVDIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR   IK    I GN+T
Sbjct: 182 NKTKTIALFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQIKQGTDIMGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYGEGIS  GEL+D+G    I+DK+GAW+S+ G+R+GQGR
Sbjct: 242 KIKVVKNKVAPPFRVAEVDIMYGEGISQVGELVDMGSDKDIIDKAGAWYSYGGERIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K F + N E+   +E  +R   G+
Sbjct: 302 ENAKKFFKNNPELRAEVEQKVRAAYGI 328


>gi|70904917|gb|AAZ14036.1| RecA [Burkholderia ambifaria]
          Length = 276

 Score =  418 bits (1075), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 200/275 (72%), Positives = 242/275 (88%), Gaps = 1/275 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPES
Sbjct: 3   AALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPES 61

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEIT
Sbjct: 62  SGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEIT 121

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C++
Sbjct: 122 DALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLV 181

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKN
Sbjct: 182 IFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKN 241

Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           K++ PF++  FDI+YGEGIS  GE+IDLGV+A IV
Sbjct: 242 KVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIV 276


>gi|328955571|ref|YP_004372904.1| RecA protein [Coriobacterium glomerans PW2]
 gi|328455895|gb|AEB07089.1| RecA protein [Coriobacterium glomerans PW2]
          Length = 359

 Score =  418 bits (1075), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/327 (60%), Positives = 260/327 (79%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ K ++   ++I++ +G G+IM+ G  G   E +E +S+G+L LD ALGIGG P+GRI+
Sbjct: 19  ERDKMIDITRAEIEKKFGTGSIMRFGDGGPQLE-VEAISTGALALDAALGIGGVPRGRII 77

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+L  +A++Q  GG  AF+DAEHALD  YA ++GVD+  +LISQPDTG
Sbjct: 78  EIYGPESSGKTTLSLEILAEAQAAGGVVAFIDAEHALDPAYAARIGVDIDEVLISQPDTG 137

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+D +VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL  S+
Sbjct: 138 EQALEICDMLIRSGAIDAVVIDSVAALVPRAEIEGEMGDTTVGLQARLMSQALRKLAGSL 197

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+SK + +FINQ+R KIGVMFG+PETT GG ALKF+SSVR+DIRR+ SIK+   + GN+ 
Sbjct: 198 SKSKTMCIFINQLREKIGVMFGNPETTPGGRALKFFSSVRIDIRRIDSIKNGQEVVGNRV 257

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R KVVKNK+A+PF+  EFDIMYG GIS  G ++D+GV+  IV+KSGAW++++ +RLGQGR
Sbjct: 258 RAKVVKNKVAAPFRSAEFDIMYGTGISKEGSILDMGVEFEIVNKSGAWYTYESERLGQGR 317

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           E +K FLR + E+AE IE  +R   GL
Sbjct: 318 EAAKEFLRVHPELAEEIEGKVRVACGL 344


>gi|327403650|ref|YP_004344488.1| Protein recA [Fluviicola taffensis DSM 16823]
 gi|327319158|gb|AEA43650.1| Protein recA [Fluviicola taffensis DSM 16823]
          Length = 343

 Score =  418 bits (1074), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/332 (62%), Positives = 271/332 (81%), Gaps = 3/332 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           KE+N  +K KAL+  + ++ + +GKG++M+LG   S  E IEV+ SGS+ LDIALG+ G+
Sbjct: 4   KEVN-PEKLKALQLTMEKLDKTFGKGSVMKLGD--SAIEEIEVIPSGSITLDIALGVNGY 60

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRIVEIYGPESSGKTTLA+H IA+ QK GG  AF+DAEHA D  YA+KLGVD++NLLI
Sbjct: 61  PKGRIVEIYGPESSGKTTLAIHAIAECQKNGGIAAFIDAEHAFDQFYAQKLGVDIENLLI 120

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI D L+RSGAVD++VIDSVAALTP+AEIEG+MG+S  G+QARLMS+ALR
Sbjct: 121 SQPDNGEQALEIADSLIRSGAVDLLVIDSVAALTPKAEIEGEMGDSQMGLQARLMSKALR 180

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT SIS++KC  +FINQ+R KIGVMFG+PETTTGGNALKFY+S+R+DIRR   IK+ + 
Sbjct: 181 KLTGSISKAKCCCIFINQLRDKIGVMFGNPETTTGGNALKFYASMRIDIRRSAQIKEGED 240

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + GN+ +VKVVKNK+A PF++ EFDIMYGEGIS  GE+ID+GV+ +I+ KSG+WFS+   
Sbjct: 241 VIGNRIKVKVVKNKVAPPFRKAEFDIMYGEGISKVGEIIDIGVELNILKKSGSWFSYGET 300

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAG 336
           RLGQGR++ K  + +N E+ + +E+ ++   G
Sbjct: 301 RLGQGRDSVKNMIADNPELMDELEAKIKDALG 332


>gi|47571284|gb|AAT35799.1| RecA [Mycobacterium nonchromogenicum]
          Length = 307

 Score =  418 bits (1074), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 196/304 (64%), Positives = 250/304 (82%), Gaps = 2/304 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 6   DREKALELAMAQIDKNFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YARKLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYARKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADTLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+T
Sbjct: 184 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG GIS  G LID+GV    + KSG+WF++ G++LGQG+
Sbjct: 244 RVKVVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGSWFTYDGEQLGQGK 303

Query: 311 ENSK 314
           EN++
Sbjct: 304 ENAR 307


>gi|225573513|ref|ZP_03782268.1| hypothetical protein RUMHYD_01706 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039128|gb|EEG49374.1| hypothetical protein RUMHYD_01706 [Blautia hydrogenotrophica DSM
           10507]
          Length = 352

 Score =  418 bits (1074), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/357 (58%), Positives = 279/357 (78%), Gaps = 12/357 (3%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN   K KALE+A+  I++ YGKGA+M+LG +  I   IE V +GSL LDIALG+GG P+
Sbjct: 1   MNNEQKQKALESAIENIEKQYGKGAVMKLG-ESKINHQIETVPTGSLSLDIALGLGGVPR 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E+YGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YA+ +GVD+ NL ISQ
Sbjct: 60  GRILEVYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI + +VRSGAVDI+++DSVAAL P+AEI+GDMG+S  G+QARLMSQALRKL
Sbjct: 120 PDNGEQALEIAETMVRSGAVDIVIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+ IS+S CI++FINQ+R K+GVMFG+PETTTGG ALKFYSS+RL++R+  S+K      
Sbjct: 180 TAVISKSNCIVLFINQLREKVGVMFGNPETTTGGRALKFYSSIRLEVRKGESLKQGSEFV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G++T+VKVVKNK+A PFK  EFDIM+GEGIS  G+++DL    ++V+KSGAW+++ G+++
Sbjct: 240 GSRTKVKVVKNKVAPPFKTAEFDIMFGEGISREGDVLDLAAACNVVNKSGAWYAYNGEKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK------DDADKD 357
           GQGREN+KI+L+E+ E+ + I+  +R     V   LL+E  + T+       D+DK+
Sbjct: 300 GQGRENAKIYLKEHPEVFQEIDHKVR-----VFHHLLEEEPVGTEGTSSLVPDSDKE 351


>gi|225936950|emb|CAJ82772.1| recA recombinase [Enterococcus gilvus]
          Length = 348

 Score =  418 bits (1074), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/327 (60%), Positives = 261/327 (79%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AA+ +I++ YGKG+IM+LG +  + + I  + SGSL LD+ALG+GG+P+GRIV
Sbjct: 4   DRKAALDAAMKKIEKNYGKGSIMKLGEK--VDQKISTIPSGSLALDVALGVGGYPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA++LGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKHGGTAAFIDAEHALDPQYAQRLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDIIVIDSVAAL PRAEI+G+MG++  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIIVIDSVAALVPRAEIDGEMGDAHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I VFINQ+R K+GVMFG+PE T GG ALKFY++VRL++RR   +K+   I GN+T
Sbjct: 182 NKTKTIAVFINQIREKVGVMFGNPEVTPGGRALKFYATVRLEVRRAEQLKNGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG GIS  GEL+D+ V+  I+DKSGAW+ +K  R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGLGISQEGELLDMAVEQDIIDKSGAWYGYKEDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K +L ++ E+   + + +R   G+
Sbjct: 302 ENAKKYLADHPEMMAEVATRVRAAYGI 328


>gi|152991678|ref|YP_001357399.1| recombinase A [Sulfurovum sp. NBC37-1]
 gi|166220687|sp|A6Q6D3|RECA_SULNB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|151423539|dbj|BAF71042.1| DNA recombination protein RecA [Sulfurovum sp. NBC37-1]
          Length = 347

 Score =  418 bits (1074), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 205/327 (62%), Positives = 266/327 (81%), Gaps = 3/327 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+ A+ QI + +GKG +M+LG +   FE I  +S+GSLGLD+ALGIGG P+GRIVE
Sbjct: 7   KQKALDMAIKQIDKTFGKGTLMRLGDKE--FEPIAAISTGSLGLDMALGIGGIPQGRIVE 64

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTLAL TIA +QK G  CAF+DAEHALD +YA+ LGVD  NLL+SQPD GE
Sbjct: 65  VYGPESSGKTTLALQTIASAQKEGMVCAFIDAEHALDVVYAKNLGVDTDNLLVSQPDFGE 124

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL++ + L RSGAVD+I++DSVAALTP++EIEGDMG++  G+QARLMSQALRKLT+ + 
Sbjct: 125 QALDVLETLTRSGAVDLIIVDSVAALTPKSEIEGDMGDTHVGLQARLMSQALRKLTAILH 184

Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++   ++FINQ+RMKIG M +GSPETTTGGNALKFY SVR+D+RR+ ++K  +S  GN+ 
Sbjct: 185 KTNTTVIFINQIRMKIGTMGYGSPETTTGGNALKFYCSVRIDVRRIATLKQGESQIGNRV 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           + KVVKNK+A PF+Q EFDIM+GEGIS+ GELID G+K  IVDKSGAWFS+  ++LGQG+
Sbjct: 245 KAKVVKNKVAPPFRQAEFDIMFGEGISYIGELIDYGIKMDIVDKSGAWFSYGAEKLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K+ L+EN ++ E IE  +++  G 
Sbjct: 305 ENAKLTLKENPKLREEIEMQVKEALGF 331


>gi|160892548|ref|ZP_02073338.1| hypothetical protein CLOL250_00077 [Clostridium sp. L2-50]
 gi|156865589|gb|EDO59020.1| hypothetical protein CLOL250_00077 [Clostridium sp. L2-50]
          Length = 344

 Score =  417 bits (1073), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 191/317 (60%), Positives = 259/317 (81%), Gaps = 1/317 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ YGKG++M+LG   +    IEV+ +GSL LDIALG+GG P+GRI+E++GPESSGKT
Sbjct: 17  QIEKQYGKGSVMKLGDSSANMN-IEVIPTGSLSLDIALGLGGVPRGRIIEVFGPESSGKT 75

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ALH +A+ QK GG   F+DAEHALD +YA+ +GV++ +L ISQPD GEQALEIT+ +V
Sbjct: 76  TVALHIVAEIQKRGGIAGFIDAEHALDPVYAKNIGVNIDDLYISQPDCGEQALEITETMV 135

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD+I++DSVAAL P+AEI+G+MG+S  G+ ARLMSQALRKLT+ +S++ C+++FIN
Sbjct: 136 RSGAVDVIIVDSVAALVPKAEIDGEMGDSHMGLHARLMSQALRKLTAVVSKTNCVVIFIN 195

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+R K+GV+FG+PE TTGG ALKFY+SVR+D+RR+ ++K    I GN+TRVKVVKNK+A 
Sbjct: 196 QLREKVGVVFGNPEVTTGGRALKFYASVRMDVRRIDTLKMGGEIVGNRTRVKVVKNKVAP 255

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PFK+ EFDIM+G+GIS  G+++DL V   IVDKSGAW+++ G ++GQGREN+K FL EN 
Sbjct: 256 PFKEAEFDIMFGKGISREGDILDLAVANDIVDKSGAWYAYMGDKIGQGRENAKAFLAENQ 315

Query: 322 EIAENIESLLRQNAGLV 338
            I + I+  +R+  GLV
Sbjct: 316 AICDEIDEKIREKLGLV 332


>gi|260617889|gb|ACX47244.1| RecA [Bacillus sp. fiply 3A]
          Length = 300

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/299 (65%), Positives = 249/299 (83%), Gaps = 2/299 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+LG +      I  V SGSL LD ALGIGG+P+GRI+E+YGPESSGKT
Sbjct: 2   QIEKQFGKGSIMKLGEKTDTR--ISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ALH IA+ Q+ GG  AF+DAEHALD +YA+KLGV+++ LL+SQPDTGEQALEI + LV
Sbjct: 60  TVALHAIAEVQEKGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVDI+V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I++SK I +FIN
Sbjct: 120 RSGAVDIVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKSKTIAIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K  + + GN+TR+KVVKNK+A 
Sbjct: 180 QIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVLGNKTRIKVVKNKVAP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
           PF+  E DIMYGEGIS  GE+IDLG +  IV KSG+W+S++ +RLGQGREN+K FL+EN
Sbjct: 240 PFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKEN 298


>gi|47678148|emb|CAF21837.1| RecA recombinase [Enterococcus pseudoavium]
          Length = 349

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/330 (60%), Positives = 262/330 (79%), Gaps = 2/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AA+ +I++ YGKG+IM+LG +  + + I  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKAALDAAMKKIEKNYGKGSIMKLGEK--VDQQISTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA++LGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKHGGTAAFIDAEHALDPQYAQRLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDIIVIDSVAAL PRAEI+G+MG++  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIIVIDSVAALVPRAEIDGEMGDAHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I VFINQ+R K+GVMFG+PE T GG ALKFY++VRL++RR   +K+   I GN+T
Sbjct: 182 NKTKTIAVFINQIREKVGVMFGNPEVTPGGRALKFYATVRLEVRRAEQLKNGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG GIS  GEL+D+ V+  I+DKSGAW+ +K  R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGFGISQEGELLDMAVEQDIIDKSGAWYGYKEDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           EN+K +L ++ E+   + + +R   G+  D
Sbjct: 302 ENAKKYLADHPEMMAEVATRVRAAYGIGED 331


>gi|228473221|ref|ZP_04057976.1| protein RecA [Capnocytophaga gingivalis ATCC 33624]
 gi|228275371|gb|EEK14163.1| protein RecA [Capnocytophaga gingivalis ATCC 33624]
          Length = 387

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 196/324 (60%), Positives = 265/324 (81%), Gaps = 4/324 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K++AL+ AL ++++ +GKG +M+LG +  + E +EV+ SGSLGLDIALG+GG+P+GR++E
Sbjct: 18  KAQALKLALERLEKSFGKGTVMRLGDK--VAEKVEVIPSGSLGLDIALGVGGYPRGRVIE 75

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+G ESSGKTTL LH IA++QK GG+ AF+DAEHA D  YA+K+G+D+ NL++SQPD GE
Sbjct: 76  IFGQESSGKTTLTLHAIAEAQKQGGSAAFIDAEHAFDPYYAKKIGIDIDNLIVSQPDNGE 135

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSGAVDIIV+DSVAALTP++EI+G+MG+S  G+ ARLMSQALRK+T SIS
Sbjct: 136 QALEIVDGLVRSGAVDIIVVDSVAALTPKSEIDGEMGDSKMGVHARLMSQALRKITGSIS 195

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR-VGSIKDKD-SITGNQ 249
           ++ C+++FINQ+R KIGV FG+PETTTGGNALKFYSSVR+D+RR    +K+KD    GN 
Sbjct: 196 KANCVVMFINQLRDKIGVTFGNPETTTGGNALKFYSSVRVDVRRQAAPLKNKDGEAYGNL 255

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TR+KVVKNK+A PF++ EF+I+YGEGIS   E++D G +  I+ KSGAW+S++G RL  G
Sbjct: 256 TRIKVVKNKVAPPFQKTEFEIIYGEGISKVSEIVDWGTEFDILSKSGAWYSYQGTRLANG 315

Query: 310 RENSKIFLRENIEIAENIESLLRQ 333
           R+  K  L +N E+AE IE+ +++
Sbjct: 316 RDAMKALLLDNPEMAEEIENKIKE 339


>gi|227538654|ref|ZP_03968703.1| recombination protein RecA [Sphingobacterium spiritivorum ATCC
           33300]
 gi|300770190|ref|ZP_07080069.1| recombination protein A [Sphingobacterium spiritivorum ATCC 33861]
 gi|227241573|gb|EEI91588.1| recombination protein RecA [Sphingobacterium spiritivorum ATCC
           33300]
 gi|300762666|gb|EFK59483.1| recombination protein A [Sphingobacterium spiritivorum ATCC 33861]
          Length = 337

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/326 (63%), Positives = 263/326 (80%), Gaps = 2/326 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+  DK KAL+  L ++++ YGKG IM+LG   S  E IE +S+GSLGLDIALGIGG PK
Sbjct: 1   MSNQDKLKALQLTLDKLEKSYGKGTIMKLGD--SAVEPIESISTGSLGLDIALGIGGVPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTTLA H +A++QK GG  A +DAEHA D  YA+KLGVD++NLLISQ
Sbjct: 59  GRIIEIYGPESSGKTTLATHIVAEAQKKGGIAAIIDAEHAFDKYYAQKLGVDVENLLISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQ LEI D L+RSGA+D+IVIDSVAAL P+ EIEG+MG+S  G+QARLMSQALRKL
Sbjct: 119 PDNGEQGLEIADNLIRSGAIDVIVIDSVAALVPKGEIEGEMGDSKMGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T +IS++ C  +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IKD D ++
Sbjct: 179 TGTISKTNCCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRTSQIKDSDEVS 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ +VK+VKNK+A PF+  EFDIM+GEGIS  GE+IDLGV+ +I+ KSG+WFS+   +L
Sbjct: 239 GNRVKVKIVKNKVAPPFRIAEFDIMFGEGISKVGEIIDLGVEYNIIKKSGSWFSYGDTKL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332
           GQGR+  K  L++N ++ + +E  ++
Sbjct: 299 GQGRDAVKSLLQDNPDLMDELEQKIK 324


>gi|237753162|ref|ZP_04583642.1| recombinase A [Helicobacter winghamensis ATCC BAA-430]
 gi|229375429|gb|EEO25520.1| recombinase A [Helicobacter winghamensis ATCC BAA-430]
          Length = 343

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/331 (63%), Positives = 268/331 (80%), Gaps = 3/331 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KA+E A+ QI + +GKGA+++LG +    E I+ +S+GSLGLDIALGIGG PKGRI+
Sbjct: 6   NKQKAIELAIKQIDKAFGKGALIRLGDKP--VEKIDAISTGSLGLDIALGIGGIPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTLAL  +A+ QK+GG CAF+DAEHALD  YA++LGVD++NLL+SQPD G
Sbjct: 64  EVYGPESSGKTTLALQIVAECQKSGGICAFIDAEHALDVTYAKRLGVDVENLLVSQPDFG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L RSG VD+IVIDSVAALTP++EIEGDMG+   G+QARLMSQALRK+T  I
Sbjct: 124 EQALEILETLTRSGGVDLIVIDSVAALTPKSEIEGDMGDQHVGLQARLMSQALRKVTGVI 183

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIGVM +GSPETTTGGNALKFY+SVR+D+RR+ ++K  +   GN+
Sbjct: 184 HKMNTTVIFINQIRMKIGVMGYGSPETTTGGNALKFYASVRIDVRRIAALKQGEQNIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF+  EFDIM+GEGIS  GELID GVK  IVDKSGAW S+  ++LGQG
Sbjct: 244 VKAKVVKNKVAPPFRGAEFDIMFGEGISKEGELIDYGVKLDIVDKSGAWLSYGDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           +EN+K+FL+EN EIA+ IE  ++ +  +  D
Sbjct: 304 KENAKVFLKENPEIAQEIEEKIKASISITDD 334


>gi|22770580|gb|AAN06665.1|AF497237_1 DNA recombinase [Listeria monocytogenes]
          Length = 348

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 194/323 (60%), Positives = 258/323 (79%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+
Sbjct: 3   DRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I
Sbjct: 121 EQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR   +K    + GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A P +  E DIMYGEGIS  GEL+D+  +  +++KSG+W+S+K +R+GQGR
Sbjct: 241 KIKVVKNKVAPPXRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           EN+K +L+E+ +I + I   +R+
Sbjct: 301 ENAKQYLKEHTDIRDEISKRVRE 323


>gi|148897709|emb|CAM18508.1| recombinase A [Ochrobactrum gallinifaecis]
          Length = 238

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 195/232 (84%), Positives = 219/232 (94%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE V +GSL LDIALGIGG PKGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAE
Sbjct: 2   IETVPTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIE
Sbjct: 62  HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+SLPG+QARLMSQALRKLT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALK
Sbjct: 122 GEMGDSLPGLQARLMSQALRKLTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALK 181

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276
           FY+SVRLDIRR+GSIK++D + GNQTRVKVVKNK+A PFKQVEFDIMYG G+
Sbjct: 182 FYASVRLDIRRIGSIKERDEVVGNQTRVKVVKNKLAPPFKQVEFDIMYGAGV 233


>gi|320535880|ref|ZP_08035954.1| protein RecA [Treponema phagedenis F0421]
 gi|320147270|gb|EFW38812.1| protein RecA [Treponema phagedenis F0421]
          Length = 413

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 193/327 (59%), Positives = 269/327 (82%), Gaps = 2/327 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  +K KALEAA  QI++ +G+G++M+LG   +   G++V+ SG++ LD ALGIGG+P+G
Sbjct: 8   NPEEKLKALEAARLQIEKQFGQGSLMKLGKDNAA-TGVDVIPSGNILLDEALGIGGYPRG 66

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EIYGPESSGKTTLALH +A++QK GG  AF+D+EHALD  YA+ LGV++  L +SQP
Sbjct: 67  RIIEIYGPESSGKTTLALHAVAEAQKRGGIAAFIDSEHALDPQYAQALGVNIDELWVSQP 126

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI + LVRSGAVDIIV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT
Sbjct: 127 DTGEQALEIAESLVRSGAVDIIVVDSVAALTPQAEIEGEMGDSHMGLQARLMSQALRKLT 186

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI-KDKDSIT 246
           + I++SKC+++FINQ+RMKIGVMFG+PETTTGGNALKFY+S+R+++R+  ++ K ++   
Sbjct: 187 AIINKSKCMIIFINQLRMKIGVMFGNPETTTGGNALKFYASIRIEVRKTDTLGKGEEEAW 246

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN  R++VVKNK+A PF+++E +I++G+G S FG ++D  VK  I+DK GAW+S+  +++
Sbjct: 247 GNMVRIRVVKNKLAPPFRKLETEILFGKGFSIFGSILDAAVKQEIIDKKGAWYSYGEEKI 306

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333
           GQG+EN+  FL+EN+++   IE  +R+
Sbjct: 307 GQGKENATKFLQENLDLTMQIEKQIRE 333


>gi|20807821|ref|NP_622992.1| recombinase A [Thermoanaerobacter tengcongensis MB4]
 gi|20516381|gb|AAM24596.1| RecA/RadA recombinase [Thermoanaerobacter tengcongensis MB4]
          Length = 307

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/300 (66%), Positives = 252/300 (84%), Gaps = 2/300 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           +++K KALE A+SQI+R +GKGAIM+LG    +   +EV+ +GSL LDIALG+GG P+GR
Sbjct: 2   MIEKQKALEMAISQIERQFGKGAIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EI+GPESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGV++ +LL++QPD
Sbjct: 60  IIEIFGPESSGKTTLALHMIAEAQKIGGTGAFIDAEHALDPVYAKNLGVNIDDLLVAQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL  
Sbjct: 120 TGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLAG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
             S+SK I+VFINQ+R K+GVMFG+PETT GG ALKFY+++RLD+R+V +IK  + I G+
Sbjct: 180 VTSKSKSIVVFINQLREKVGVMFGNPETTPGGRALKFYATIRLDVRKVDNIKQGNEIVGS 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++DLG    I++KSG+W+S+K  +LGQ
Sbjct: 240 RTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILDLGTALDIIEKSGSWYSYKDIKLGQ 299


>gi|260583531|ref|ZP_05851279.1| protein RecA [Granulicatella elegans ATCC 700633]
 gi|260158157|gb|EEW93225.1| protein RecA [Granulicatella elegans ATCC 700633]
          Length = 351

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/335 (58%), Positives = 261/335 (77%), Gaps = 2/335 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ +AL+ AL +I++ YGKGA+M+LG +      ++ VSSGSL LDIALG GG+PKGRI+
Sbjct: 6   NRQRALDDALKKIEKSYGKGAVMKLGEKAD--SQVQTVSSGSLALDIALGAGGYPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTT+ALH +A+ QK GG  AF+DAEHALD  YAR LGV+++ LL+SQPDTG
Sbjct: 64  EIFGPESSGKTTVALHAVAEVQKRGGVAAFIDAEHALDPEYARALGVNIEELLLSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ L I D LV SGAVDI+++DSVAAL PRAEIEGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 124 EQGLGIADALVASGAVDIVIVDSVAALVPRAEIEGDMGQSHVGLQARLMSQALRKLSGTI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +R+K I +FINQ+R K+G+MFG+PETT GG ALKFY+S+RLD+RR   IK+   I GN T
Sbjct: 184 NRTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASIRLDVRRSDQIKNGAEILGNHT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYGEGIS  GE++D+     +V KSGAW+++  +++GQGR
Sbjct: 244 KIKVVKNKVAPPFKTAEVDIMYGEGISQIGEILDMASDLDLVKKSGAWYAYNDEKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           EN+K +L E+ EI + +   +R +  +  + + QE
Sbjct: 304 ENAKKYLTEHPEIVDVLTQKIRAHYNIGGEVISQE 338


>gi|157738440|ref|YP_001491124.1| recombinase A [Arcobacter butzleri RM4018]
 gi|166918707|sp|A8EWY1|RECA_ARCB4 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|157700294|gb|ABV68454.1| DNA-dependent ATPase, RecA [Arcobacter butzleri RM4018]
          Length = 349

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/349 (59%), Positives = 279/349 (79%), Gaps = 4/349 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ K+LE A+ QI + +GKG +++LG +  I   +E +S+GSLGLD+ALG+GG P+GR++
Sbjct: 4   NQKKSLELAIKQIDKAFGKGTLIRLGDKEVI--PVETISTGSLGLDLALGVGGLPRGRVI 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA++QK GG CAF+DAEHALD  YA+++GVD  NLL+SQPD G
Sbjct: 62  EIYGPESSGKTTLTLHAIAEAQKAGGVCAFIDAEHALDVKYAKEIGVDTDNLLVSQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + ++RSGAVD++V+DSVAALTP+ EI+GDM +   G+QARLMS+ALRK+T  +
Sbjct: 122 EQALEILETVIRSGAVDLVVVDSVAALTPKVEIDGDMDDQQVGVQARLMSKALRKVTGLL 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           S+  C ++FINQ+RMKIG+  +GSPETTTGGNALKFYSSVRLDIRR+ ++K  ++  GN+
Sbjct: 182 SKMNCTVIFINQIRMKIGMTGYGSPETTTGGNALKFYSSVRLDIRRIATLKQGENSIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A+PFKQ EFDIM+GEGIS  GEL+D GVK  IVDK+GAWFS+   ++GQG
Sbjct: 242 VKVKVVKNKVAAPFKQAEFDIMFGEGISKTGELVDYGVKLDIVDKAGAWFSYGDSKIGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           RENSK+FL++N E+A  IE+ + ++ G V D L+     ++ D +  DD
Sbjct: 302 RENSKVFLKDNPEVAREIENKILESMG-VNDELITSGTDDSDDISGLDD 349


>gi|148887241|emb|CAM12787.1| recombinase A [Ochrobactrum pseudogrignonense]
          Length = 251

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 194/232 (83%), Positives = 219/232 (94%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE V +GSL LDIALG+GG PKGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAE
Sbjct: 1   IETVPTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIE
Sbjct: 61  HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+SLPG+QARLMSQALRKLT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALK
Sbjct: 121 GEMGDSLPGLQARLMSQALRKLTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALK 180

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276
           FY+SVRLDIRR+GSIK++D + GNQTRVKVVKNK+A PFKQVEFDIMYG G+
Sbjct: 181 FYASVRLDIRRIGSIKERDEVVGNQTRVKVVKNKLAPPFKQVEFDIMYGAGV 232


>gi|47571296|gb|AAT35805.1| RecA [Mycobacterium triviale]
          Length = 304

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 193/304 (63%), Positives = 252/304 (82%), Gaps = 2/304 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
            + D+ KALE AL+QI++ +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+G
Sbjct: 3   QVPDREKALELALAQIEKSHGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRG 60

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R++EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA++LGVD  +LL+SQP
Sbjct: 61  RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKRLGVDTDSLLVSQP 120

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQA+RK+T
Sbjct: 121 DTGEQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQAMRKMT 180

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++S S    +FINQ+R K+GVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD     G
Sbjct: 181 GALSNSGTTAIFINQLREKVGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVG 240

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV    + KSG+W++++G++LG
Sbjct: 241 NRTRVKVVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVDHGFIRKSGSWYTYEGEQLG 300

Query: 308 QGRE 311
           QG+E
Sbjct: 301 QGKE 304


>gi|88801769|ref|ZP_01117297.1| recombinase A [Polaribacter irgensii 23-P]
 gi|88782427|gb|EAR13604.1| recombinase A [Polaribacter irgensii 23-P]
          Length = 335

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/321 (63%), Positives = 262/321 (81%), Gaps = 2/321 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+  L ++ + YGKGA+M+LG    + E I+ +SSGSLGLD+ALG+GG+P+GR++E
Sbjct: 10  KLKALQLTLDKLDKTYGKGAVMKLGD--VVTEEIDAISSGSLGLDLALGVGGYPRGRVIE 67

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA++QK GG  AF+DAEHA D  YA  LGVD+ NL+ISQPD GE
Sbjct: 68  IYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAEHAFDKFYAENLGVDIDNLIISQPDHGE 127

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI + L+RSGA+DI+VIDSVAALTP+AEIEG+MG+S  G+ ARLMSQALRKLT +IS
Sbjct: 128 QALEIAENLIRSGAIDIVVIDSVAALTPKAEIEGEMGDSKMGLHARLMSQALRKLTGTIS 187

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++KC ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IKD D + GN T+
Sbjct: 188 KTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRRTQIKDGDRVIGNSTK 247

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF+  EFDIMYG+GIS  GE++D+GV+  IV KSG+WFS+   +LGQGR+
Sbjct: 248 VKVVKNKVAPPFQIAEFDIMYGQGISKVGEILDIGVELGIVKKSGSWFSYGETKLGQGRD 307

Query: 312 NSKIFLRENIEIAENIESLLR 332
             K  +++N E+A+ +E  ++
Sbjct: 308 AVKGLIKDNPELADELEGKIK 328


>gi|57504667|ref|ZP_00370745.1| recA protein [Campylobacter coli RM2228]
 gi|305432629|ref|ZP_07401790.1| recombination protein A [Campylobacter coli JV20]
 gi|57019436|gb|EAL56131.1| recA protein [Campylobacter coli RM2228]
 gi|304444340|gb|EFM36992.1| recombination protein A [Campylobacter coli JV20]
          Length = 343

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/328 (63%), Positives = 263/328 (80%), Gaps = 3/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+AAL  + + +GKG I++LG +    E I+ + +GS+GLD+ALGIGG PKGRI+
Sbjct: 4   NKKKSLDAALKSLDKAFGKGTILRLGDKE--VEQIDSIGTGSVGLDLALGIGGIPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD  YA+ LGVD  NL ISQPD G
Sbjct: 62  EIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLGVDTDNLYISQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSGA+D+IV+DSVAALTP+AEIEGDMG+   G+QARLMSQALRKLT  +
Sbjct: 122 EQALEIVETIARSGAIDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRKLTGIV 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R+V ++K  +   GN+
Sbjct: 182 HKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQNEEPIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PF+Q EFD+M+GEG+S  GELID GVK  IVDKSGAWFS+K ++LGQG
Sbjct: 242 VKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           RENSK FL+EN EIA+ I   ++ + G+
Sbjct: 302 RENSKAFLKENPEIADEITKEIQNSMGI 329


>gi|255533438|ref|YP_003093810.1| recA protein [Pedobacter heparinus DSM 2366]
 gi|255346422|gb|ACU05748.1| recA protein [Pedobacter heparinus DSM 2366]
          Length = 337

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/322 (64%), Positives = 259/322 (80%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+  L ++++ YGKG +M+LG      E IE +S+GS+ LDIALGIGG PKGRI+
Sbjct: 6   DKLKALQLTLDKLEKSYGKGTVMKLGDNA--VEPIESISTGSISLDIALGIGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLA H IA++QK GG  A VDAEHA D  YA+KLGVD+ NLLISQPD G
Sbjct: 64  EIYGPESSGKTTLATHIIAEAQKKGGIAAIVDAEHAFDKGYAKKLGVDVDNLLISQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+ ARLMSQALRKLT +I
Sbjct: 124 EQALEIADNLIRSGAIDVIVIDSVAALVPKAEIEGEMGDSKMGLHARLMSQALRKLTGTI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++ C  +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IKD D ++GN+ 
Sbjct: 184 SKTGCCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRTSQIKDSDEVSGNRV 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VK+VKNK+A PF+  EFDIM+GEGIS  GE+IDLGV  +I+ K+G+WFS+   +LGQGR
Sbjct: 244 KVKIVKNKVAPPFRIAEFDIMFGEGISKTGEIIDLGVDFNIIKKAGSWFSYGDTKLGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           +  K  L +N E++E IE+ +R
Sbjct: 304 DAVKQLLMDNPELSEEIEAKIR 325


>gi|47571254|gb|AAT35784.1| RecA [Mycobacterium intracellulare ATCC 13950]
 gi|90654496|gb|ABD96034.1| RecA [Mycobacterium indicus pranii]
          Length = 304

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 193/301 (64%), Positives = 251/301 (83%), Gaps = 2/301 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 6   DREKALELAMAQIEKSYGKGSVMRLGDE--MRQPISVIPTGSIALDVALGIGGLPRGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGALDILVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+T
Sbjct: 184 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK++ PFKQ EFDI+YG GIS  G LID+GV    + KSG+WF+++G++LGQG+
Sbjct: 244 RVKIVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGSWFTYEGEQLGQGK 303

Query: 311 E 311
           E
Sbjct: 304 E 304


>gi|32490984|ref|NP_871238.1| recombinase A [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
 gi|30316210|sp|Q8D2W7|RECA_WIGBR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|25166190|dbj|BAC24381.1| recA [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 331

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/323 (60%), Positives = 256/323 (79%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALE AL +I++ +GKG+IM LG   S+   IE +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKKKALEKALDKIEKQFGKGSIMTLGENRSM--DIETISTGSLSLDIALGTGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  I ++QK G  CAF+DAEHALD IYA+ LGVD+ NLL SQPD G
Sbjct: 64  EIYGPESSGKTTLTLEVIYEAQKKGKICAFIDAEHALDPIYAKNLGVDINNLLCSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEI+G++G+   G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDSLTRSGAVDLIIVDSVAALTPKAEIDGEIGDLHLGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+R+KIG +FGSPE TTGGNALKFY+SVRLDIR++G+IKD D I GN+T
Sbjct: 184 KNANTLLIFINQIRVKIGTIFGSPEVTTGGNALKFYASVRLDIRKIGTIKDGDIIIGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+++PF+Q EF I+YG GI+  GELI LGV  +I++KSG+W+S+   ++GQG+
Sbjct: 244 RVKVVKNKISAPFRQAEFQILYGNGINTEGELITLGVNHNIIEKSGSWYSYNKNKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  FL+ N  I++ I   +R+
Sbjct: 304 NNACNFLKNNPNISKEISRKIRE 326


>gi|313672067|ref|YP_004050178.1| reca protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312938823|gb|ADR18015.1| RecA protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 333

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/327 (60%), Positives = 264/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AALS+I++ +GKGA+M+LG +    E   V+ +G L LD ALG+GG P+GRI+
Sbjct: 4   EKLKALDAALSKIEKDFGKGAVMKLGDKA--IEKPPVIPTGILTLDAALGVGGIPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+G ESSGKTT+A H IA++QK GG  AF+DAEHA+D +YA+ +GVD+ NL +SQPD G
Sbjct: 62  EIFGSESSGKTTVAFHMIAEAQKLGGIAAFIDAEHAMDPVYAKAIGVDVDNLFVSQPDNG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI + LVRSGA+DIIVIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT+ +
Sbjct: 122 EAALEIAETLVRSGAIDIIVIDSVAALTPKAEIEGDMGDSFMGLQARLMSQALRKLTAIV 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK  LVFINQ R KIG+ +G+PETTTGGNALKFY+++R++++R G +KDK+   G++T
Sbjct: 182 NKSKTALVFINQTRQKIGISYGNPETTTGGNALKFYATIRIEVKRSGHLKDKEENVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
             KVVKNK+A PFKQ +FDI+YG G+S  G LIDLGV+  ++ KSGAWFS+K  ++GQG+
Sbjct: 242 VAKVVKNKVAPPFKQAKFDILYGTGVSKEGILIDLGVEEGLIGKSGAWFSYKDTKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN++ +L++N EI + IE  +R+  GL
Sbjct: 302 ENARQYLKDNPEIMKEIELEIRKKLGL 328


>gi|282850497|ref|ZP_06259876.1| RecA protein [Veillonella parvula ATCC 17745]
 gi|294793991|ref|ZP_06759128.1| protein RecA [Veillonella sp. 3_1_44]
 gi|282579990|gb|EFB85394.1| RecA protein [Veillonella parvula ATCC 17745]
 gi|294455561|gb|EFG23933.1| protein RecA [Veillonella sp. 3_1_44]
          Length = 346

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 204/326 (62%), Positives = 266/326 (81%), Gaps = 1/326 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M +  +  AL+ AL QI++ +GKGAIM+LG        +EV+SSGSL +DIA+G+GGFP+
Sbjct: 1   MAVDGRQAALDNALKQIEKDFGKGAIMRLGEAADRMN-VEVISSGSLAIDIAVGVGGFPR 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++EIYGPESSGKTT+ALH +A++QK GG  AF+DAEHA+D +YAR LGVD+ NLLISQ
Sbjct: 60  GRVIEIYGPESSGKTTVALHAVAEAQKQGGIAAFIDAEHAMDPVYARNLGVDINNLLISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT+ LVRSGAVDI+V+DSVAAL P+AEI+G+MG++  G+QARLMS+ALRKL
Sbjct: 120 PDNGEQALEITEALVRSGAVDIVVVDSVAALVPKAEIDGEMGDAHVGLQARLMSKALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T  IS+SK +++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+R+   IK  +   
Sbjct: 180 TGIISKSKTVVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRKGELIKANNENV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T+VKVVKNK+A PFK  EFD+MYGEGIS  G LID+G    I++KSGAW+S+ G+R+
Sbjct: 240 GARTKVKVVKNKVAPPFKTAEFDLMYGEGISKTGTLIDIGTNMEIINKSGAWYSYNGERM 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332
           GQG+E +K +L EN +IA+ I+ ++R
Sbjct: 300 GQGKEAAKQYLLENPQIADEIDRIIR 325


>gi|313893135|ref|ZP_07826712.1| RecA protein [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442488|gb|EFR60903.1| RecA protein [Veillonella sp. oral taxon 158 str. F0412]
          Length = 346

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/326 (62%), Positives = 267/326 (81%), Gaps = 1/326 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M +  +  AL+ AL QI++ +GKGAIM+LG        +EV+SSGSL +DIA+G+GGFP+
Sbjct: 1   MAVDGRQAALDNALKQIEKDFGKGAIMRLGEAADRMN-VEVISSGSLAIDIAVGVGGFPR 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++EIYGPESSGKTT+ALH +A++QK GG  AF+DAEHA+D +YAR LGVD+ NLLISQ
Sbjct: 60  GRVIEIYGPESSGKTTVALHAVAEAQKQGGIAAFIDAEHAMDPVYARNLGVDINNLLISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT+ LVRSGAVDI+V+DSVAAL P+AEIEG+MG++  G+QARLMS+ALRKL
Sbjct: 120 PDNGEQALEITEALVRSGAVDIVVVDSVAALVPKAEIEGEMGDAHVGLQARLMSKALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T  IS+SK +++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+R+   IK  +   
Sbjct: 180 TGIISKSKTVVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRKGELIKANNENV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T+VKVVKNK+A PFK  EFD+MYGEGIS  G LID+G    I++KSGAW+S+ G+R+
Sbjct: 240 GARTKVKVVKNKVAPPFKTAEFDLMYGEGISKAGTLIDIGTNMEIINKSGAWYSYNGERM 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332
           GQG+E++K +L +N ++A+ I+ ++R
Sbjct: 300 GQGKESAKQYLLDNPQVADEIDRIIR 325


>gi|262341357|ref|YP_003284212.1| recombinase A [Blattabacterium sp. (Blattella germanica) str. Bge]
 gi|262272694|gb|ACY40602.1| recombinase A [Blattabacterium sp. (Blattella germanica) str. Bge]
          Length = 333

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/323 (63%), Positives = 263/323 (81%), Gaps = 7/323 (2%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           I  K K+LE  L ++ ++YGKG +M++G   S  E +E++SSGSL LDIALGI GFPKGR
Sbjct: 5   IEQKRKSLELVLEKMDKIYGKGTVMRMGD--SHIENLEIISSGSLSLDIALGIYGFPKGR 62

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EI+GPESSGKTT+ALH I QSQK GG  +F+DAEHALD +YA+K+GV++K L+ISQPD
Sbjct: 63  IIEIFGPESSGKTTVALHAITQSQKLGGFASFIDAEHALDCLYAQKIGVNVKELIISQPD 122

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GEQALEI D L+RSG +D+IV+DSVAALTP++EIEG+MG+S  G+QARLMSQALRKLTS
Sbjct: 123 NGEQALEIVDNLIRSGVIDMIVVDSVAALTPKSEIEGEMGDSKIGLQARLMSQALRKLTS 182

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           SI +SK IL+FINQ+R KIGV +G+PE TTGGNALKFYSS+RLDIR+   IK+ + + GN
Sbjct: 183 SIGKSKSILIFINQLREKIGV-YGNPEVTTGGNALKFYSSIRLDIRKGNQIKNGEKVLGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T+VKVVKNK++ PFK  EFDIMYGEGIS  GE++DLGV   I+ K+ +WFS+   +LGQ
Sbjct: 242 RTKVKVVKNKLSPPFKIAEFDIMYGEGISKIGEILDLGVDLGIIKKNASWFSYGDMKLGQ 301

Query: 309 GRENSKIFL--RENI--EIAENI 327
           GR++ K FL  ++NI  EI +NI
Sbjct: 302 GRDSVKEFLKGKKNIINEIQKNI 324


>gi|34540649|ref|NP_905128.1| recombinase A [Porphyromonas gingivalis W83]
 gi|188994921|ref|YP_001929173.1| recombinase A [Porphyromonas gingivalis ATCC 33277]
 gi|37538300|sp|P77925|RECA_PORGI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238691481|sp|B2RJN1|RECA_PORG3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|34396963|gb|AAQ66027.1| recA protein [Porphyromonas gingivalis W83]
 gi|188594601|dbj|BAG33576.1| recombinase A [Porphyromonas gingivalis ATCC 33277]
          Length = 340

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 196/322 (60%), Positives = 259/322 (80%), Gaps = 2/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K +AL  A  +I++ +GKGAIM +G+  +  E + V+ SGS+GLD+ALG+GG+P+GRI+E
Sbjct: 14  KLQALRMATEKIEKTFGKGAIMNMGA--NTVEDVSVIPSGSIGLDLALGVGGYPRGRIIE 71

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLA+H IA++QK GG  A +DAEHA D  YA KLGV++ NL I+QPD GE
Sbjct: 72  IYGPESSGKTTLAIHAIAEAQKAGGLAAIIDAEHAFDRTYAEKLGVNVDNLWIAQPDNGE 131

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI + L+RS AVDIIVIDSVAALTP+AEIEG+MG++  G+ ARLMSQALRK+T +IS
Sbjct: 132 QALEIAEQLIRSSAVDIIVIDSVAALTPKAEIEGEMGDNKVGLHARLMSQALRKMTGAIS 191

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S    +FINQ+R KIGV+FG+PETTTGGNALKFY+S+R+DIR+   IKD + I G+ T+
Sbjct: 192 KSNTTCIFINQLREKIGVLFGNPETTTGGNALKFYASIRIDIRKSTPIKDGEEIMGHLTK 251

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV+KNK+A PF++ EFDI++GEGIS  GE+IDLGV+  I+ KSG+WFS+   +LGQGRE
Sbjct: 252 VKVLKNKVAPPFRKAEFDIVFGEGISRSGEIIDLGVELDIIKKSGSWFSYGDTKLGQGRE 311

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
            +K  +R+N E+AE +   +R+
Sbjct: 312 AAKEMIRDNEELAEELTEKIRE 333


>gi|315636740|ref|ZP_07891969.1| recombination protein A [Arcobacter butzleri JV22]
 gi|315478957|gb|EFU69661.1| recombination protein A [Arcobacter butzleri JV22]
          Length = 349

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/349 (59%), Positives = 278/349 (79%), Gaps = 4/349 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ K+LE A+ QI + +GKG +++LG +  I   +E +S+GSLGLD+ALG+GG P+GR++
Sbjct: 4   NQKKSLELAIKQIDKAFGKGTLIRLGDKEVI--PVETISTGSLGLDLALGVGGLPRGRVI 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA++QK GG CAF+DAEHALD  YA+ +GVD  NLL+SQPD G
Sbjct: 62  EIYGPESSGKTTLTLHAIAEAQKAGGVCAFIDAEHALDVKYAKDIGVDTDNLLVSQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + ++RSGAVD++V+DSVAALTP+ EI+GDM +   G+QARLMS+ALRK+T  +
Sbjct: 122 EQALEILETVIRSGAVDLVVVDSVAALTPKVEIDGDMDDQQVGVQARLMSKALRKVTGLL 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           S+  C ++FINQ+RMKIG+  +GSPETTTGGNALKFYSSVRLDIRR+ ++K  ++  GN+
Sbjct: 182 SKMNCTVIFINQIRMKIGMTGYGSPETTTGGNALKFYSSVRLDIRRIATLKQGENSIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A+PFKQ EFDIM+GEGIS  GEL+D GVK  IVDK+GAWFS+   ++GQG
Sbjct: 242 VKVKVVKNKVAAPFKQAEFDIMFGEGISKTGELVDYGVKLDIVDKAGAWFSYGDSKIGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           RENSK+FL++N E+A  IE+ + ++ G V D L+     ++ D +  DD
Sbjct: 302 RENSKVFLKDNPEVAREIENKILESMG-VNDELITSGTDDSDDISGLDD 349


>gi|154148649|ref|YP_001407297.1| recombinase A [Campylobacter hominis ATCC BAA-381]
 gi|166220636|sp|A7I456|RECA_CAMHC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|153804658|gb|ABS51665.1| protein RecA [Campylobacter hominis ATCC BAA-381]
          Length = 348

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/327 (63%), Positives = 263/327 (80%), Gaps = 3/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K LE+AL  I + +GKG +++LG +    E I+ +S+GS+GLDIALGIGG PKGRIV
Sbjct: 4   NKKKMLESALKSIDKAFGKGTLVRLGDKE--VEKIDSISTGSVGLDIALGIGGVPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD  YA  LGVD+ NL +SQPD G
Sbjct: 62  EIYGPESSGKTTLTLHIIAECQKKGGVCAFVDAEHALDVKYAANLGVDVDNLYVSQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL+I + L +SGA+D++V+DSVAALTP++EIEGDMG+   G+QARLMSQALRKLT  +
Sbjct: 122 EQALDIVETLAKSGAIDLVVVDSVAALTPKSEIEGDMGDQHVGLQARLMSQALRKLTGVV 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIG M +GSPETTTGGNALKFY+SVRLDIRR+ ++K  D   GN+
Sbjct: 182 HKMGTTVIFINQIRMKIGQMGYGSPETTTGGNALKFYASVRLDIRRIATLKQNDESIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PFK  EFDIM+GEGIS  GEL+D GVK  IVDKSG+WFS+K ++LGQG
Sbjct: 242 AKVKVVKNKVAPPFKVAEFDIMFGEGISKMGELVDYGVKLDIVDKSGSWFSYKDKKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336
           REN+KI+L+EN ++A+ I + +R+  G
Sbjct: 302 RENAKIYLKENPKVADEILAAIREQMG 328


>gi|212694172|ref|ZP_03302300.1| hypothetical protein BACDOR_03698 [Bacteroides dorei DSM 17855]
 gi|237710193|ref|ZP_04540674.1| recombinase A [Bacteroides sp. 9_1_42FAA]
 gi|237727695|ref|ZP_04558176.1| recombinase A [Bacteroides sp. D4]
 gi|265751001|ref|ZP_06087064.1| RecA protein [Bacteroides sp. 3_1_33FAA]
 gi|212663238|gb|EEB23812.1| hypothetical protein BACDOR_03698 [Bacteroides dorei DSM 17855]
 gi|229434551|gb|EEO44628.1| recombinase A [Bacteroides dorei 5_1_36/D4]
 gi|229455655|gb|EEO61376.1| recombinase A [Bacteroides sp. 9_1_42FAA]
 gi|263237897|gb|EEZ23347.1| RecA protein [Bacteroides sp. 3_1_33FAA]
          Length = 347

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 204/321 (63%), Positives = 263/321 (81%), Gaps = 2/321 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AA+ +I++ +GKG+IM++G      + +EV+ +GS+ L+ ALG+GG+PKGRI+
Sbjct: 21  EKLKALQAAMDKIEKTFGKGSIMKMGDDN--VQEVEVIPTGSIALNAALGVGGYPKGRII 78

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD G
Sbjct: 79  EIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDNG 138

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++  G+QARLMSQALRKLTS+I
Sbjct: 139 EQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTSAI 198

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++    +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   +KD + + GNQT
Sbjct: 199 SKTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQLKDGEEVIGNQT 258

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG    I+ KSG+W+S+   +LGQGR
Sbjct: 259 KVKVVKNKVAPPFRKAEFDIMFGEGISRAGEIIDLGADLGIIKKSGSWYSYNETKLGQGR 318

Query: 311 ENSKIFLRENIEIAENIESLL 331
           + SK  +++N E+AE +E L+
Sbjct: 319 DASKQVIQDNPELAEELEGLI 339


>gi|138894815|ref|YP_001125268.1| RecA2 protein [Geobacillus thermodenitrificans NG80-2]
 gi|134266328|gb|ABO66523.1| RecA2 protein [Geobacillus thermodenitrificans NG80-2]
          Length = 321

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/307 (65%), Positives = 249/307 (81%), Gaps = 2/307 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG Q      I  V SGSL LDIALG+GG+P+GRI+EIYGPESSGKTT+ALH IA+ Q
Sbjct: 1   MKLGEQAE--RQISTVPSGSLALDIALGVGGYPRGRIIEIYGPESSGKTTVALHAIAEVQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG  AF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI + LVRSGAVDIIVID
Sbjct: 59  KQGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEG+MG++  G+QARLMSQALRKL+ +I++SK I +FINQ+R K+GVMFG
Sbjct: 119 SVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETT GG ALKFY+SVRL++RR   IK  + + GN+T++KVVKNK+A PFK  + DIMY
Sbjct: 179 NPETTPGGRALKFYASVRLEVRRAEQIKQGNDMVGNKTKIKVVKNKVAPPFKTADVDIMY 238

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           GEGIS  GE+ID+  +  IV KSG+W+S+K +RLGQGREN+K FL+EN  IAE I   +R
Sbjct: 239 GEGISREGEIIDMAAELDIVQKSGSWYSYKDERLGQGRENAKQFLKENPHIAEEIARAIR 298

Query: 333 QNAGLVA 339
           ++ G+ A
Sbjct: 299 KHYGIDA 305


>gi|259046489|ref|ZP_05736890.1| recombinase A [Granulicatella adiacens ATCC 49175]
 gi|259036905|gb|EEW38160.1| recombinase A [Granulicatella adiacens ATCC 49175]
          Length = 348

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 195/327 (59%), Positives = 257/327 (78%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ +ALE AL +I++ YGKGA+M+LG +  +   I+ VSSGSL LDIALG+GGFP+GRI+
Sbjct: 6   NRQRALEDALKKIEKSYGKGAVMKLGEK--VDTQIQTVSSGSLALDIALGVGGFPRGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A+ QK GG  AF+DAEHALD  YA+ LGV++  LL+SQPDTG
Sbjct: 64  EVYGPESSGKTTVALHAVAEVQKRGGVAAFIDAEHALDPEYAKALGVNIDELLLSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ L I D LV SGAVDI+++DSVAAL PRAEI+GDMG+S  G+QARLMSQALRKL+ SI
Sbjct: 124 EQGLGIADALVSSGAVDIVIVDSVAALVPRAEIDGDMGQSHVGLQARLMSQALRKLSGSI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY++VRL++RR   IK    I GNQT
Sbjct: 184 NKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRADQIKQGTEILGNQT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK    DIMYGEGIS  GEL+D+      V KSGAW+++  +++GQGR
Sbjct: 244 KIKVVKNKVAPPFKTAVVDIMYGEGISQLGELLDMAADLDFVKKSGAWYAYNDEKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K +L ++ E+  ++   +R + G+
Sbjct: 304 ENAKAYLADHPEVVADLNQKVRAHYGI 330


>gi|218885979|ref|YP_002435300.1| recombinase A [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|226737755|sp|B8DP00|RECA_DESVM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|218756933|gb|ACL07832.1| recA protein [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 357

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/350 (58%), Positives = 268/350 (76%), Gaps = 8/350 (2%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + +AL  ALS I+R YG+G++M+L     +   I V+ +GS+GLD+ALG+GG P+GR+ E
Sbjct: 13  RREALSTALSTIERKYGQGSVMKLSDTAHV--NIPVIPTGSIGLDLALGVGGIPRGRVSE 70

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH IA+ QK GGT AF+DAEHALD+ YAR+LGV    LLISQPD GE
Sbjct: 71  IYGPESSGKTTLALHIIAECQKLGGTAAFIDAEHALDTNYARRLGVKTDELLISQPDFGE 130

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL+I DMLVRS AVDI+VIDSVAAL P+AE+EG MGE   G QARLMS ALRKLT +I 
Sbjct: 131 QALDIADMLVRSSAVDIVVIDSVAALIPQAELEGVMGEMQVGGQARLMSHALRKLTGTIH 190

Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +S+  ++FINQ+RMKIG M +G+PETTTGGNALKFYSS+R+DIR++ ++KDK+ + G++T
Sbjct: 191 KSRTAVIFINQIRMKIGTMGYGNPETTTGGNALKFYSSIRMDIRKIQTLKDKEEVYGSRT 250

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++  FDI+YG GIS  GELIDLG    I++KSG+WF+F  +RLGQG+
Sbjct: 251 RVKVVKNKVAPPFREALFDILYGTGISRTGELIDLGSDVGIIEKSGSWFAFGSERLGQGK 310

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           EN +  L EN  +  N+E+ L ++ G++   +     ++  D+A   D D
Sbjct: 311 ENVRALLEENEALRLNVEAKLIEHLGMMPSKV-----VDPDDNAGAMDDD 355


>gi|150004914|ref|YP_001299658.1| recombinase A [Bacteroides vulgatus ATCC 8482]
 gi|149933338|gb|ABR40036.1| RecA [Bacteroides vulgatus ATCC 8482]
          Length = 347

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/321 (63%), Positives = 263/321 (81%), Gaps = 2/321 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AA+ +I++ +GKG+IM++G      + +EV+ +GS+ L+ ALG+GG+PKGRI+
Sbjct: 21  EKLKALQAAMDKIEKTFGKGSIMKMGDDN--VQEVEVIPTGSIALNAALGVGGYPKGRII 78

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD G
Sbjct: 79  EIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDNG 138

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++  G+QARLMSQALRKLTS+I
Sbjct: 139 EQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTSAI 198

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++    +FINQ+R KIG+MFG+PETTTGGNALKFY+SVRLDIRR   +KD + + GNQT
Sbjct: 199 SKTNTTCIFINQLREKIGIMFGNPETTTGGNALKFYASVRLDIRRSTQLKDGEEVIGNQT 258

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG    I+ KSG+W+S+   +LGQGR
Sbjct: 259 KVKVVKNKVAPPFRKAEFDIMFGEGISRAGEIIDLGADLGIIKKSGSWYSYNETKLGQGR 318

Query: 311 ENSKIFLRENIEIAENIESLL 331
           + SK  +++N E+AE +E L+
Sbjct: 319 DASKQVIQDNPELAEELEGLI 339


>gi|323339760|ref|ZP_08080030.1| recombination protein A [Lactobacillus ruminis ATCC 25644]
 gi|323092839|gb|EFZ35441.1| recombination protein A [Lactobacillus ruminis ATCC 25644]
          Length = 362

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/327 (60%), Positives = 258/327 (78%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL +I++ +GKG+IM++G +      I  V +GSL LD ALG+GGFP+GRIV
Sbjct: 4   DRKAALDNALKKIEKNFGKGSIMRMGDKADTR--ISTVPTGSLSLDEALGVGGFPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  YA+ LGV++  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPAYAQALGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGA+DI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 122 EQGLEICDALVSSGAIDIVVVDSVAALVPRAEIEGEMGDTHVGLQARLMSQALRKLSGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   IKD   I GN+ 
Sbjct: 182 NKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQIKDGSDIIGNRV 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PFK  E DIMYGEGIS  GELID+ V+  IV KSG+WFS+  +R+GQGR
Sbjct: 242 RIKVVKNKVAPPFKTAEVDIMYGEGISKTGELIDMAVEKEIVKKSGSWFSYGEERIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K +++E+ +I E +   +R   G+
Sbjct: 302 ENAKKYMKEHPDIMEEVTKKVRAAYGI 328


>gi|47678142|emb|CAF21834.1| RecA recombinase [Enterococcus malodoratus]
          Length = 349

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/322 (61%), Positives = 259/322 (80%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AA+ +I++ YGKG+IM+LG +  + + I  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKAALDAAMKKIEKNYGKGSIMKLGEK--VDQQISTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA++LGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKHGGTAAFIDAEHALDPQYAQRLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDIIVIDSVAAL PRAEI+G+MG++  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIIVIDSVAALVPRAEIDGEMGDAHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I VFINQ+R K+GVMFG+PE T GG ALKFY++VRL++RR   +K+   I GN+T
Sbjct: 182 NKTKTIAVFINQIREKVGVMFGNPEVTPGGRALKFYATVRLEVRRAEQLKNGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG GIS  GEL+D+ V+  IVDKSGAW+ +K  R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGFGISQEGELLDMAVEKDIVDKSGAWYGYKEDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           EN+K +L ++ E+   + + +R
Sbjct: 302 ENAKKYLADHPEMMAEVATRVR 323


>gi|28971925|dbj|BAC65339.1| RecA [Campylobacter lari]
 gi|28971927|dbj|BAC65340.1| RecA [Campylobacter lari]
          Length = 344

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/349 (60%), Positives = 272/349 (77%), Gaps = 9/349 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+AAL  + + +GKG I++LG +    E I+ + +GS+GLD+ALGIGG PKGRI+
Sbjct: 4   NKRKSLDAALKSLDKTFGKGTILRLGDKE--VEKIDSIPTGSVGLDLALGIGGVPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD  YA+ LGVD +NL ISQPD G
Sbjct: 62  EIYGPESSGKTTLTLHIIAECQKKGGVCAFIDAEHALDVRYAKNLGVDTENLYISQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSGA+D+IV+DSVAALTP+AEIEGDMG+   G+QARLMSQALRKLT  +
Sbjct: 122 EQALEIVETIARSGAIDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRKLTGIV 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIG+M +G+PETTTGGNALKFY+SVRLD+R+  ++K  D   GN+
Sbjct: 182 HKMNTTVIFINQIRMKIGMMGYGTPETTTGGNALKFYASVRLDVRKTATLKQNDEPIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKV KNK+A PFKQ EFD+M+GEG+S  GELID GVK  I+DKSGAWFS+K  +LGQG
Sbjct: 242 VKVKVAKNKVAPPFKQAEFDVMFGEGVSREGELIDYGVKLDIIDKSGAWFSYKASKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           REN+K FL+EN  IA+ I   ++ + G+  DS++    +  K+D + DD
Sbjct: 302 RENAKAFLKENPAIADEITQAIQNSIGI--DSMI----LGAKEDDEGDD 344


>gi|148897705|emb|CAM18506.1| recombinase A [Ochrobactrum grignonense]
 gi|148897707|emb|CAM18507.1| recombinase A [Ochrobactrum grignonense]
          Length = 247

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/247 (79%), Positives = 223/247 (90%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E V +GSL LDIALG+GG PKGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEH
Sbjct: 1   ETVPTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG
Sbjct: 61  ALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +MG+SLPG+QARLMSQALRKLT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKF
Sbjct: 121 EMGDSLPGLQARLMSQALRKLTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKF 180

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           Y+SVRLDIRR+GSIK++D + GNQTRVKVVKNK+A PFKQVEFDIMYG G+  +     L
Sbjct: 181 YASVRLDIRRIGSIKERDEVVGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVPRWANWSIL 240

Query: 286 GVKASIV 292
             KA  V
Sbjct: 241 VSKAGSV 247


>gi|94987624|ref|YP_595557.1| recombinase A [Lawsonia intracellularis PHE/MN1-00]
 gi|94731873|emb|CAJ55236.1| RecA protein (Recombinase A) [Lawsonia intracellularis PHE/MN1-00]
          Length = 355

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 202/345 (58%), Positives = 266/345 (77%), Gaps = 3/345 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + +AL+ AL  I+R +G+GA+M+L     +   + V+ +GS+GLD+ALGIGG P+GR+ E
Sbjct: 12  RREALKTALDTIERKFGQGAVMKLSDD--VHVKVAVIPTGSIGLDLALGIGGIPRGRVTE 69

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA+ QK GGT AF+DAEHALD  YA++LGV    L+ISQPD GE
Sbjct: 70  IYGPESSGKTTLTLHIIAECQKLGGTAAFIDAEHALDIAYAKRLGVKTDELIISQPDHGE 129

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DMLVRSGAVD++V+DSVAAL P+ E+EG MGE+  G  ARLMS ALRKLT +I 
Sbjct: 130 QALEIADMLVRSGAVDLVVVDSVAALIPQTELEGSMGETQVGGHARLMSHALRKLTGTIH 189

Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +S   ++FINQ+RMKIGV+ +GSPETTTGGNALKFYSSVR+DIR++ ++KDK+   G+ T
Sbjct: 190 KSHTAVIFINQIRMKIGVVGYGSPETTTGGNALKFYSSVRMDIRKIQTLKDKEESYGSLT 249

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PF++ +FDI++G GIS  GELIDLGV+A I+DKSG+WF+F  ++LGQG+
Sbjct: 250 RVKVVKNKMAPPFREAKFDIIWGTGISRSGELIDLGVEAGIIDKSGSWFAFGSEKLGQGK 309

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           E  +  L EN  +  +IE+ L ++ G+  + LL   +   +D+ D
Sbjct: 310 EKVRALLDENTSLKSSIETALMEHLGMNPEKLLCPVSDELEDNYD 354


>gi|254882557|ref|ZP_05255267.1| recombinase A [Bacteroides sp. 4_3_47FAA]
 gi|294778525|ref|ZP_06743948.1| RecA protein [Bacteroides vulgatus PC510]
 gi|319642102|ref|ZP_07996768.1| RecA protein [Bacteroides sp. 3_1_40A]
 gi|254835350|gb|EET15659.1| recombinase A [Bacteroides sp. 4_3_47FAA]
 gi|294447787|gb|EFG16364.1| RecA protein [Bacteroides vulgatus PC510]
 gi|317386368|gb|EFV67281.1| RecA protein [Bacteroides sp. 3_1_40A]
          Length = 347

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/321 (63%), Positives = 263/321 (81%), Gaps = 2/321 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AA+ +I++ +GKG+IM++G      + +EV+ +GS+ L+ ALG+GG+PKGRI+
Sbjct: 21  EKLKALQAAMDKIEKTFGKGSIMKMGDDN--VQEVEVIPTGSIALNAALGVGGYPKGRII 78

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD G
Sbjct: 79  EIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDNG 138

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++  G+QARLMSQALRKLTS+I
Sbjct: 139 EQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTSAI 198

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++    +FINQ+R KIG+MFG+PETTTGGNALKFY+SVRLDIRR   +KD + + GNQT
Sbjct: 199 SKTNTTCIFINQLREKIGIMFGNPETTTGGNALKFYASVRLDIRRSTQLKDGEEVIGNQT 258

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG    I+ KSG+W+S+   +LGQGR
Sbjct: 259 KVKVVKNKVAPPFRKAEFDIMFGEGISRAGEIIDLGADLGIIKKSGSWYSYNETKLGQGR 318

Query: 311 ENSKIFLRENIEIAENIESLL 331
           + SK  +++N E+AE +E L+
Sbjct: 319 DASKQVIQDNPELAEELEGLI 339


>gi|256618079|ref|ZP_05474925.1| protein recA [Enterococcus faecalis ATCC 4200]
 gi|256597606|gb|EEU16782.1| protein recA [Enterococcus faecalis ATCC 4200]
          Length = 348

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 196/337 (58%), Positives = 264/337 (78%), Gaps = 2/337 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ +GKG+IM+LG +    + I  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKVALDAALKKIEKNFGKGSIMKLGEKAD--QKISTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT++LH IA+ Q+ GGT AF+DAEHALD  YA KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVSLHAIAEVQRNGGTAAFIDAEHALDPQYAEKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ+LEI D LV SGA+DI+VIDSVAAL PRAEI+G+MG S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQSLEIADALVSSGAIDIVVIDSVAALVPRAEIDGEMGASHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY++VRL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKQGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+ V+  ++ KSGAW+ +K +R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGQGISQEGELLDMAVEKDLISKSGAWYGYKEERIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           EN+K ++ ++ E+   +  L+R   G+   S + E A
Sbjct: 302 ENAKQYMADHPEMMAEVSKLVRDAYGIGDGSTITEEA 338


>gi|31540553|gb|AAP49239.1| RecA [Mycobacterium mucogenicum]
          Length = 305

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 195/301 (64%), Positives = 247/301 (82%), Gaps = 2/301 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE AL+QI + +GKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 7   DREKALELALAQIDKSFGKGSVMRLGEE--TRQPISVIPTGSIALDVALGIGGLPRGRVI 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD   LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLVRSGAIDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+T
Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFKQ EFDI+YG GIS  G LID+GV+   + KSG+WF++ G++LGQG+
Sbjct: 245 RVKIVKNKVAPPFKQAEFDILYGRGISREGSLIDMGVEHGFIRKSGSWFTYDGEQLGQGK 304

Query: 311 E 311
           E
Sbjct: 305 E 305


>gi|317154428|ref|YP_004122476.1| recA protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316944679|gb|ADU63730.1| recA protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 365

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/353 (58%), Positives = 268/353 (75%), Gaps = 3/353 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + +AL  AL+ I+R +GKGAIM+L  + S    I  + +GS+GLDIALGIGG P+GR++E
Sbjct: 12  RKEALGTALTTIERKFGKGAIMRLDDEAS--HAIPFIPTGSIGLDIALGIGGVPRGRVIE 69

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH +AQ+QK GG  AFVDAEHALD  YA++LGV    +LISQPD GE
Sbjct: 70  IYGPESSGKTTLALHIVAQAQKQGGNAAFVDAEHALDPGYAKRLGVKTDEMLISQPDYGE 129

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D+LVRSGAVD+IVIDSVAAL P+AE+EG MGE+  G QARLMS ALRKLT +I 
Sbjct: 130 QALEIADLLVRSGAVDVIVIDSVAALIPQAELEGQMGETQVGGQARLMSHALRKLTGTIH 189

Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +S C+++FINQ+RMKIG+  +G+PETT+GGNALKFY+S RLDIRR+ ++KDKD   G + 
Sbjct: 190 KSNCVVIFINQIRMKIGMTGYGNPETTSGGNALKFYASCRLDIRRIQTLKDKDESYGIRA 249

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PF++   D++YG+GIS  GELID+GV+  I++KSG+WF+F  ++LGQG+
Sbjct: 250 RIKVVKNKVAPPFREALVDVLYGQGISRTGELIDMGVELGIIEKSGSWFAFGSEKLGQGK 309

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           EN +  L +N +IA  IE  L  + G   +    +   +T+D A     D+ E
Sbjct: 310 ENVRQLLEDNPDIAGAIEEKLMAHLGYRGEPAAGKLTRSTRDSAGDSTGDSTE 362


>gi|322379036|ref|ZP_08053439.1| recombinase A [Helicobacter suis HS1]
 gi|321148528|gb|EFX43025.1| recombinase A [Helicobacter suis HS1]
          Length = 341

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/324 (65%), Positives = 263/324 (81%), Gaps = 3/324 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KALE A+ QI + +GKGA+M+LG +    E IEV S+GSLGLD+ALGIGG PKGRIVE
Sbjct: 5   KQKALELAIKQIDKQFGKGALMRLGDKE--VEHIEVTSTGSLGLDMALGIGGVPKGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTL LH IAQ+Q+ GGTCAF+DAEHALD  YA+KLGVD  NLLISQPDTGE
Sbjct: 63  VYGPESSGKTTLTLHIIAQAQREGGTCAFIDAEHALDVQYAKKLGVDTDNLLISQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           +ALEI + L RSGAVD+IV+DSVAALTPRAEIEGDMG+   G+QARLMSQALRK+T  + 
Sbjct: 123 EALEILETLARSGAVDVIVVDSVAALTPRAEIEGDMGDQHVGLQARLMSQALRKITGILH 182

Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +    L+FINQ+RMKIG M +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+ 
Sbjct: 183 KMNTTLIFINQIRMKIGTMGYGSPETTTGGNALKFYASVRIDIRRIATLKQNEHPIGNRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK+ EFDIMYG+GIS  GELID GVK  +++KSGAWFS+  ++LGQGR
Sbjct: 243 RVKVVKNKVAPPFKEAEFDIMYGDGISQAGELIDYGVKLEVIEKSGAWFSYLDKKLGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQN 334
           E +K+ L+ + ++A  I   +++ 
Sbjct: 303 EAAKLSLKNDGDLATEIAGKIKEK 326


>gi|29377621|ref|NP_816775.1| recombinase A [Enterococcus faecalis V583]
 gi|227517221|ref|ZP_03947270.1| recombination protein A [Enterococcus faecalis TX0104]
 gi|227554589|ref|ZP_03984636.1| recombination protein A [Enterococcus faecalis HH22]
 gi|229547403|ref|ZP_04436128.1| recombination protein A [Enterococcus faecalis TX1322]
 gi|229547976|ref|ZP_04436701.1| recombination protein A [Enterococcus faecalis ATCC 29200]
 gi|255970636|ref|ZP_05421222.1| recombinase A [Enterococcus faecalis T1]
 gi|255974216|ref|ZP_05424802.1| recombinase A [Enterococcus faecalis T2]
 gi|256761011|ref|ZP_05501591.1| recombinase A [Enterococcus faecalis T3]
 gi|256854839|ref|ZP_05560203.1| recombinase A [Enterococcus faecalis T8]
 gi|256958446|ref|ZP_05562617.1| protein recA [Enterococcus faecalis DS5]
 gi|256960511|ref|ZP_05564682.1| recA [Enterococcus faecalis Merz96]
 gi|256963004|ref|ZP_05567175.1| recA [Enterococcus faecalis HIP11704]
 gi|257078242|ref|ZP_05572603.1| recA [Enterococcus faecalis JH1]
 gi|257080437|ref|ZP_05574798.1| recombinase A [Enterococcus faecalis E1Sol]
 gi|257083159|ref|ZP_05577520.1| recA [Enterococcus faecalis Fly1]
 gi|257088275|ref|ZP_05582636.1| RecA/RadA recombinase [Enterococcus faecalis D6]
 gi|257091406|ref|ZP_05585767.1| recombinase recA [Enterococcus faecalis CH188]
 gi|257418010|ref|ZP_05595004.1| recombinase A recA [Enterococcus faecalis T11]
 gi|257420388|ref|ZP_05597378.1| recombinase recA [Enterococcus faecalis X98]
 gi|293385293|ref|ZP_06631109.1| protein RecA [Enterococcus faecalis R712]
 gi|293389694|ref|ZP_06634138.1| protein RecA [Enterococcus faecalis S613]
 gi|294779161|ref|ZP_06744571.1| RecA protein [Enterococcus faecalis PC1.1]
 gi|300861650|ref|ZP_07107734.1| protein RecA [Enterococcus faecalis TUSoD Ef11]
 gi|307270513|ref|ZP_07551811.1| protein RecA [Enterococcus faecalis TX4248]
 gi|307273670|ref|ZP_07554898.1| protein RecA [Enterococcus faecalis TX0855]
 gi|307276602|ref|ZP_07557720.1| protein RecA [Enterococcus faecalis TX2134]
 gi|307284801|ref|ZP_07564957.1| protein RecA [Enterococcus faecalis TX0860]
 gi|307288392|ref|ZP_07568384.1| protein RecA [Enterococcus faecalis TX0109]
 gi|307292190|ref|ZP_07572054.1| protein RecA [Enterococcus faecalis TX0411]
 gi|312902017|ref|ZP_07761279.1| protein RecA [Enterococcus faecalis TX0470]
 gi|312905475|ref|ZP_07764589.1| protein RecA [Enterococcus faecalis TX0635]
 gi|312906644|ref|ZP_07765644.1| protein RecA [Enterococcus faecalis DAPTO 512]
 gi|312910895|ref|ZP_07769730.1| protein RecA [Enterococcus faecalis DAPTO 516]
 gi|312953274|ref|ZP_07772118.1| protein RecA [Enterococcus faecalis TX0102]
 gi|30179884|sp|P42444|RECA_ENTFA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|29345089|gb|AAO82845.1| recA protein [Enterococcus faecalis V583]
 gi|227075318|gb|EEI13281.1| recombination protein A [Enterococcus faecalis TX0104]
 gi|227176266|gb|EEI57238.1| recombination protein A [Enterococcus faecalis HH22]
 gi|229306852|gb|EEN72848.1| recombination protein A [Enterococcus faecalis ATCC 29200]
 gi|229307435|gb|EEN73422.1| recombination protein A [Enterococcus faecalis TX1322]
 gi|255961654|gb|EET94130.1| recombinase A [Enterococcus faecalis T1]
 gi|255967088|gb|EET97710.1| recombinase A [Enterococcus faecalis T2]
 gi|256682262|gb|EEU21957.1| recombinase A [Enterococcus faecalis T3]
 gi|256710399|gb|EEU25443.1| recombinase A [Enterococcus faecalis T8]
 gi|256948942|gb|EEU65574.1| protein recA [Enterococcus faecalis DS5]
 gi|256951007|gb|EEU67639.1| recA [Enterococcus faecalis Merz96]
 gi|256953500|gb|EEU70132.1| recA [Enterococcus faecalis HIP11704]
 gi|256986272|gb|EEU73574.1| recA [Enterococcus faecalis JH1]
 gi|256988467|gb|EEU75769.1| recombinase A [Enterococcus faecalis E1Sol]
 gi|256991189|gb|EEU78491.1| recA [Enterococcus faecalis Fly1]
 gi|256996305|gb|EEU83607.1| RecA/RadA recombinase [Enterococcus faecalis D6]
 gi|257000218|gb|EEU86738.1| recombinase recA [Enterococcus faecalis CH188]
 gi|257159838|gb|EEU89798.1| recombinase A recA [Enterococcus faecalis T11]
 gi|257162212|gb|EEU92172.1| recombinase recA [Enterococcus faecalis X98]
 gi|291077493|gb|EFE14857.1| protein RecA [Enterococcus faecalis R712]
 gi|291080941|gb|EFE17904.1| protein RecA [Enterococcus faecalis S613]
 gi|294453794|gb|EFG22186.1| RecA protein [Enterococcus faecalis PC1.1]
 gi|300849111|gb|EFK76864.1| protein RecA [Enterococcus faecalis TUSoD Ef11]
 gi|306496696|gb|EFM66249.1| protein RecA [Enterococcus faecalis TX0411]
 gi|306500692|gb|EFM70017.1| protein RecA [Enterococcus faecalis TX0109]
 gi|306503060|gb|EFM72317.1| protein RecA [Enterococcus faecalis TX0860]
 gi|306506712|gb|EFM75864.1| protein RecA [Enterococcus faecalis TX2134]
 gi|306509683|gb|EFM78725.1| protein RecA [Enterococcus faecalis TX0855]
 gi|306513094|gb|EFM81728.1| protein RecA [Enterococcus faecalis TX4248]
 gi|310627292|gb|EFQ10575.1| protein RecA [Enterococcus faecalis DAPTO 512]
 gi|310628779|gb|EFQ12062.1| protein RecA [Enterococcus faecalis TX0102]
 gi|310631204|gb|EFQ14487.1| protein RecA [Enterococcus faecalis TX0635]
 gi|311288763|gb|EFQ67319.1| protein RecA [Enterococcus faecalis DAPTO 516]
 gi|311290953|gb|EFQ69509.1| protein RecA [Enterococcus faecalis TX0470]
 gi|315026529|gb|EFT38461.1| protein RecA [Enterococcus faecalis TX2137]
 gi|315028305|gb|EFT40237.1| protein RecA [Enterococcus faecalis TX4000]
 gi|315031853|gb|EFT43785.1| protein RecA [Enterococcus faecalis TX0017]
 gi|315034874|gb|EFT46806.1| protein RecA [Enterococcus faecalis TX0027]
 gi|315144204|gb|EFT88220.1| protein RecA [Enterococcus faecalis TX2141]
 gi|315146532|gb|EFT90548.1| protein RecA [Enterococcus faecalis TX4244]
 gi|315150789|gb|EFT94805.1| protein RecA [Enterococcus faecalis TX0012]
 gi|315152843|gb|EFT96859.1| protein RecA [Enterococcus faecalis TX0031]
 gi|315154590|gb|EFT98606.1| protein RecA [Enterococcus faecalis TX0043]
 gi|315159538|gb|EFU03555.1| protein RecA [Enterococcus faecalis TX0312]
 gi|315161295|gb|EFU05312.1| protein RecA [Enterococcus faecalis TX0645]
 gi|315164370|gb|EFU08387.1| protein RecA [Enterococcus faecalis TX1302]
 gi|315167043|gb|EFU11060.1| protein RecA [Enterococcus faecalis TX1341]
 gi|315171149|gb|EFU15166.1| protein RecA [Enterococcus faecalis TX1342]
 gi|315172879|gb|EFU16896.1| protein RecA [Enterococcus faecalis TX1346]
 gi|315573192|gb|EFU85383.1| protein RecA [Enterococcus faecalis TX0309B]
 gi|315577071|gb|EFU89262.1| protein RecA [Enterococcus faecalis TX0630]
 gi|315581306|gb|EFU93497.1| protein RecA [Enterococcus faecalis TX0309A]
 gi|323479100|gb|ADX78539.1| recombination protein A [Enterococcus faecalis 62]
 gi|327536292|gb|AEA95126.1| recombination protein A [Enterococcus faecalis OG1RF]
 gi|329577821|gb|EGG59244.1| RecA protein [Enterococcus faecalis TX1467]
          Length = 348

 Score =  415 bits (1067), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 196/337 (58%), Positives = 263/337 (78%), Gaps = 2/337 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ +GKG+IM+LG +    + I  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKVALDAALKKIEKNFGKGSIMKLGEKAD--QKISTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT++LH IA+ Q+ GGT AF+DAEHALD  YA KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVSLHAIAEVQRNGGTAAFIDAEHALDPQYAEKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGA+DI+VIDSVAAL PRAEI+G+MG S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAIDIVVIDSVAALVPRAEIDGEMGASHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY++VRL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKQGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+ V+  ++ KSGAW+ +K +R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGQGISQEGELLDMAVEKDLISKSGAWYGYKEERIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           EN+K ++ ++ E+   +  L+R   G+   S + E A
Sbjct: 302 ENAKQYMADHPEMMAEVSKLVRDAYGIGDGSTITEEA 338


>gi|57505301|ref|ZP_00371230.1| recA protein [Campylobacter upsaliensis RM3195]
 gi|57016437|gb|EAL53222.1| recA protein [Campylobacter upsaliensis RM3195]
          Length = 342

 Score =  415 bits (1067), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/328 (62%), Positives = 262/328 (79%), Gaps = 3/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+AAL  + + +GKG I++LG +    E I+ + +GS+GLD+ALGIGG PKGRI+
Sbjct: 4   NKKKSLDAALKSLDKAFGKGTILRLGDKE--IEQIDSIGTGSVGLDLALGIGGVPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD  YA+ LGVD  NL ISQPD G
Sbjct: 62  EIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLGVDTDNLYISQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSGA+D+IV+DSVAALTP+AEI+GDMG+   G+QARLMSQALRKLT  +
Sbjct: 122 EQALEIVETIARSGAIDLIVVDSVAALTPKAEIDGDMGDQHVGLQARLMSQALRKLTGIV 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R+V ++K  +   GN+
Sbjct: 182 HKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQNEEPIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PF+  EFD+MYGEG+S  GELID GVK  I+DKSGAWFS+K ++LGQG
Sbjct: 242 VKVKVVKNKVAPPFRVAEFDVMYGEGLSREGELIDYGVKLDIIDKSGAWFSYKDKKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           RENSK FLREN E+A+ I   ++ + G+
Sbjct: 302 RENSKAFLRENPELADEITKAIQNSMGI 329


>gi|150026276|ref|YP_001297102.1| recombinase A [Flavobacterium psychrophilum JIP02/86]
 gi|149772817|emb|CAL44301.1| Recombinase A [Flavobacterium psychrophilum JIP02/86]
          Length = 334

 Score =  415 bits (1067), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/317 (63%), Positives = 261/317 (82%), Gaps = 2/317 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+  L ++ + YGKG +M++G +    E +E +SSGSLGLD+ALG+GG+P+GR++E
Sbjct: 8   KLKALQLTLDKLDKTYGKGTVMKMGDKA--VEEVETISSGSLGLDLALGVGGYPRGRVIE 65

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA++QK GG  AF+DAEHA D  YA KLGVD++NL+ISQPD GE
Sbjct: 66  IYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAEHAFDRSYAEKLGVDIENLIISQPDNGE 125

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI + L+RSGA+DI+VIDSVAALTP++EIEG+MG+S  G+ ARLMSQALRKLT +IS
Sbjct: 126 QALEIAENLIRSGAIDIVVIDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTGTIS 185

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++KC + FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IKD +++ GN+T+
Sbjct: 186 KTKCTVFFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKDGENVLGNRTK 245

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PFK  EFDIMYGEG+S  GE++DL V+  ++ K+G+WFS+   +LGQGR+
Sbjct: 246 VKVVKNKVAPPFKTAEFDIMYGEGVSKTGEILDLAVEFEVIRKAGSWFSYGDTKLGQGRD 305

Query: 312 NSKIFLRENIEIAENIE 328
             K  +++N E+A+ +E
Sbjct: 306 AVKGLIKDNPELADELE 322


>gi|161788610|emb|CAP18005.2| DNA recombinase [Burkholderia contaminans]
          Length = 283

 Score =  415 bits (1067), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 194/271 (71%), Positives = 238/271 (87%)

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQP
Sbjct: 1   RVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQP 60

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT
Sbjct: 61  DTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLT 120

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + G
Sbjct: 121 GTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIG 180

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++G
Sbjct: 181 NETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIG 240

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLV 338
           QG++N++ FLREN EIA  IE+ +R++ G+V
Sbjct: 241 QGKDNAREFLRENPEIAREIENRIRESLGVV 271


>gi|78778196|ref|YP_394511.1| recombinase A [Sulfurimonas denitrificans DSM 1251]
 gi|123741066|sp|Q30P05|RECA_SULDN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|78498736|gb|ABB45276.1| RecA protein [Sulfurimonas denitrificans DSM 1251]
          Length = 345

 Score =  415 bits (1067), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 201/328 (61%), Positives = 259/328 (78%), Gaps = 3/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+ A+ QI + +GKGA+M+LG +  +   IE +S+GSLGLD+ALGIGG P+GR+V
Sbjct: 4   NKQKSLDLAMKQIDKAFGKGALMRLGDKEIM--PIESISTGSLGLDLALGIGGIPQGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLAL   A+ QK GG CAF+DAEHALD  YA+ LGVD+ NLL+SQPD G
Sbjct: 62  EIYGPESSGKTTLALQITAECQKAGGVCAFIDAEHALDVGYAKNLGVDVDNLLVSQPDYG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL+I + + RSGA+D+IVIDSVAALTP++EIEG+M +   G+QARLMS+ALRKLT  +
Sbjct: 122 EQALDIVETIARSGAIDLIVIDSVAALTPKSEIEGEMSDQNVGVQARLMSKALRKLTGIL 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +  C ++FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+D+RR+ S+K  +S  GN+
Sbjct: 182 HKMNCTVIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDVRRIASLKQGESQIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KV+KNK+A PF+Q EFDIM+GEGIS  GEL+D GVK  I+DKSGAWFS+   +LGQG
Sbjct: 242 VKAKVIKNKVAPPFRQAEFDIMFGEGISKEGELVDYGVKLDIIDKSGAWFSYGETKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           REN K    E+  +A  IE  ++   GL
Sbjct: 302 RENVKAKFMEDKVLAHEIEEKIKAAMGL 329


>gi|315639267|ref|ZP_07894429.1| recombination protein A [Campylobacter upsaliensis JV21]
 gi|315480593|gb|EFU71235.1| recombination protein A [Campylobacter upsaliensis JV21]
          Length = 342

 Score =  415 bits (1067), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/328 (62%), Positives = 262/328 (79%), Gaps = 3/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+AAL  + + +GKG I++LG +    E I+ + +GS+GLD+ALGIGG PKGRI+
Sbjct: 4   NKKKSLDAALKSLDKAFGKGTILRLGDKE--IEQIDSIGTGSVGLDLALGIGGVPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD  YA+ LGVD  NL ISQPD G
Sbjct: 62  EIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLGVDTDNLYISQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSGA+D+IV+DSVAALTP+AEI+GDMG+   G+QARLMSQALRKLT  +
Sbjct: 122 EQALEIVETIARSGAIDLIVVDSVAALTPKAEIDGDMGDQHVGLQARLMSQALRKLTGIV 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R+V ++K  +   GN+
Sbjct: 182 HKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQNEEPIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PF+  EFD+MYGEG+S  GELID GVK  I+DKSGAWFS+K ++LGQG
Sbjct: 242 VKVKVVKNKVAPPFRVAEFDVMYGEGLSREGELIDYGVKLDIIDKSGAWFSYKDKKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           RENSK FLREN E+A+ I   ++ + G+
Sbjct: 302 RENSKAFLRENPELADEITKAIQNSMGI 329


>gi|261749133|ref|YP_003256818.1| recombination protein RecA [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497225|gb|ACX83675.1| recA protein [Blattabacterium sp. (Periplaneta americana) str.
           BPLAN]
          Length = 333

 Score =  415 bits (1067), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/331 (62%), Positives = 266/331 (80%), Gaps = 8/331 (2%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M+ +KE     K KAL   L ++ ++YGKG +M++G   S  E +E++SSGS+GLDIALG
Sbjct: 1   MNEKKE-RFEQKKKALRLVLDKMDKIYGKGTVMRMGD--SHKENLEIISSGSIGLDIALG 57

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           I GFPKGRI+EI+GPESSGKTTLALH I QSQK GG   F+DAEHA D +YA+K+GV++K
Sbjct: 58  IKGFPKGRIIEIFGPESSGKTTLALHAITQSQKIGGFAGFIDAEHAFDCVYAQKIGVNIK 117

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            L+ISQPD GEQALEI D L+RSG +D+IV+DSVAALTP++EIEG+MG+S  G+QARLMS
Sbjct: 118 ELIISQPDNGEQALEIVDNLIRSGVIDMIVVDSVAALTPKSEIEGEMGDSKIGLQARLMS 177

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLTSSI +SK IL+FINQ+R KIGV +G+PE TTGGNALKFYSS+RLDIR+   IK
Sbjct: 178 QALRKLTSSIGKSKSILIFINQLREKIGV-YGNPEVTTGGNALKFYSSIRLDIRKGNQIK 236

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           + + I GN+T+VKVVKNK++ PFK  EFD++YGEGIS  GE++DLGV   I+ K+G+WFS
Sbjct: 237 NGEKILGNRTKVKVVKNKLSPPFKTAEFDLLYGEGISKIGEILDLGVDLGIIKKNGSWFS 296

Query: 301 FKGQRLGQGRENSKIFL--RENI--EIAENI 327
           +   +LGQGR++ K FL  ++NI  E+ +NI
Sbjct: 297 YGDLQLGQGRDSVKEFLKGKKNILNEMQKNI 327


>gi|78172764|gb|ABB29452.1| RecA [Mycobacterium jacuzzii]
          Length = 316

 Score =  415 bits (1067), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 193/308 (62%), Positives = 253/308 (82%), Gaps = 2/308 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           +M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +
Sbjct: 1   VMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTGEQALEI DMLVRSGA+DI+VI
Sbjct: 59  QAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDILVI 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMF
Sbjct: 119 DSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           GSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+TRVK+VKNK++ PFKQ EFDI+
Sbjct: 179 GSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNRTRVKIVKNKVSPPFKQAEFDIL 238

Query: 272 YGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLL 331
           YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG+EN++ FL EN+++A  IE  +
Sbjct: 239 YGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGKENARKFLLENVDVANEIEKKI 298

Query: 332 RQNAGLVA 339
           ++  G+ A
Sbjct: 299 KEKLGIGA 306


>gi|47571292|gb|AAT35803.1| RecA [Mycobacterium shimoidei]
          Length = 304

 Score =  415 bits (1066), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 193/301 (64%), Positives = 251/301 (83%), Gaps = 2/301 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KA+E A++QI++ +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 6   DREKAIELAIAQIEKNHGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+T
Sbjct: 184 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV    + KSG+WF+++G++LGQG+
Sbjct: 244 RVKVVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVDQGFIRKSGSWFTYEGEQLGQGK 303

Query: 311 E 311
           E
Sbjct: 304 E 304


>gi|222823194|ref|YP_002574767.1| recombinase A [Campylobacter lari RM2100]
 gi|254790425|sp|B9KEN1|RECA_CAMLR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|222538415|gb|ACM63516.1| recombinase A [Campylobacter lari RM2100]
          Length = 344

 Score =  415 bits (1066), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/334 (62%), Positives = 265/334 (79%), Gaps = 5/334 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+AAL  + + +GKG I++LG +    E I+ + +GS+GLD+ALGIGG PKGRI+
Sbjct: 4   NKRKSLDAALKSLDKTFGKGTILRLGDKE--VEKIDSIPTGSVGLDLALGIGGVPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD  YA+ LGVD +NL ISQPD G
Sbjct: 62  EIYGPESSGKTTLTLHIIAECQKKGGVCAFIDAEHALDVKYAKNLGVDTENLYISQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSGA+D+IV+DSVAALTP+AEIEGDMG+   G+QARLMSQALRKLT  +
Sbjct: 122 EQALEIVETIARSGAIDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRKLTGIV 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIG+M +G+PETTTGGNALKFYSSVRLD+R+  ++K  D   GN+
Sbjct: 182 HKMNTTVIFINQIRMKIGMMGYGTPETTTGGNALKFYSSVRLDVRKTATLKQNDEPIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKV KNK+A PFKQ EFD+M+GEG+S  GELID GVK  I+DKSGAWFS+K  +LGQG
Sbjct: 242 VKVKVAKNKVAPPFKQAEFDVMFGEGVSREGELIDYGVKLDIIDKSGAWFSYKASKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343
           REN+K FL+EN  IA+ I   ++ + G+  DS++
Sbjct: 302 RENAKAFLKENPAIADEITQAIQNSIGI--DSMI 333


>gi|220932026|ref|YP_002508934.1| recA protein [Halothermothrix orenii H 168]
 gi|219993336|gb|ACL69939.1| recA protein [Halothermothrix orenii H 168]
          Length = 357

 Score =  415 bits (1066), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 193/327 (59%), Positives = 265/327 (81%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALE A+ +I++ +G+G+IM+LG   ++   +EV+ +G+L LD+ALG+GG P+GRI+
Sbjct: 8   EKEKALEMAVKRIEKQFGQGSIMKLGEATAL--NVEVIPTGALPLDLALGVGGVPRGRII 65

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH IA++QK  G  AF+DAEHALD  Y+  LGV++ NLLISQP+ G
Sbjct: 66  EIYGPESSGKTTLALHIIAEAQKRNGVAAFIDAEHALDPKYSENLGVNIDNLLISQPNNG 125

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ALEI + LVRS A+D+IVIDSVAAL P+AE++G+MG+S  G+QARLMSQA+RKL+ +I
Sbjct: 126 EEALEIAEALVRSNAIDVIVIDSVAALVPKAELDGEMGDSHVGLQARLMSQAMRKLSGAI 185

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+SK + +FINQ+R K+GVMFG+PETT GG ALKFYSSVR++IR+  ++K+ D I G+QT
Sbjct: 186 SKSKTVCIFINQIREKVGVMFGNPETTPGGRALKFYSSVRMEIRKTQTLKNGDEIVGSQT 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++  FDIMYG GIS  G ++D+GV   I+D++G+W+S+  +RLGQGR
Sbjct: 246 RVKVVKNKVAPPFRRAIFDIMYGTGISTSGCILDMGVDTGIIDRAGSWYSYGDERLGQGR 305

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K FL +N +I + IE  +++  GL
Sbjct: 306 ENAKNFLEDNPDIMKEIEMKIKERVGL 332


>gi|149280019|ref|ZP_01886144.1| DNA recombination protein [Pedobacter sp. BAL39]
 gi|149229216|gb|EDM34610.1| DNA recombination protein [Pedobacter sp. BAL39]
          Length = 338

 Score =  415 bits (1066), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/322 (64%), Positives = 259/322 (80%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+  L ++++ YGKG +M+LG   +  E IE +S+GS+ LDIALGIGG PKGRI+
Sbjct: 6   DKLKALQLTLDKLEKSYGKGTVMKLGD--NPVEPIESISTGSISLDIALGIGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLA H IA++QK GG  A VDAEHA D  YA+KLGVD+ NLLISQPD G
Sbjct: 64  EIYGPESSGKTTLATHIIAEAQKKGGLAAIVDAEHAFDKGYAKKLGVDVDNLLISQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+ ARLMSQALRKLT +I
Sbjct: 124 EQALEIADNLIRSGAIDVIVIDSVAALVPKAEIEGEMGDSKMGLHARLMSQALRKLTGTI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++ C  +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IKD D + GN+ 
Sbjct: 184 SKTGCCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRTSQIKDSDEVAGNRV 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VK+VKNK+A PF+  EFDIM+GEGIS  GE+IDLGV  +I+ K+G+WFS+   +LGQGR
Sbjct: 244 KVKIVKNKVAPPFRIAEFDIMFGEGISKTGEIIDLGVDFNIIKKAGSWFSYGDTKLGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           +  K  L +N E++E IE+ +R
Sbjct: 304 DAVKQLLLDNPELSEEIEAKIR 325


>gi|227486463|ref|ZP_03916779.1| recombination protein A [Anaerococcus lactolyticus ATCC 51172]
 gi|227235644|gb|EEI85659.1| recombination protein A [Anaerococcus lactolyticus ATCC 51172]
          Length = 349

 Score =  415 bits (1066), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 201/323 (62%), Positives = 260/323 (80%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+ A  QI++ YGKG+IM++G    +   I+ + +G++ LDIALGIGG P+GR++
Sbjct: 4   DKKKALDQAFKQIEKKYGKGSIMKMGEAPRV--AIDSIPTGAVNLDIALGIGGLPRGRVI 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH IA++QK G TCAFVDAEHALD+ YA  LGV++  L++SQPDTG
Sbjct: 62  EIYGPESSGKTTLALHVIAEAQKLGDTCAFVDAEHALDAEYAGNLGVNIDELILSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E  L+I + LVRSGAV +IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALR+LT  I
Sbjct: 122 EAGLDIAESLVRSGAVGLIVIDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRRLTGII 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S   ++FINQ+R KIGVMFG+PETTTGG ALKFY+SVRLDIRR+ +I + D+  G++T
Sbjct: 182 SKSNTTVIFINQLREKIGVMFGNPETTTGGRALKFYASVRLDIRRIKTITEGDNSIGSRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFK VEFDIMYG+GIS  G L+D  V   IV+K+G+W+S+  ++LGQGR
Sbjct: 242 RVKIVKNKVAPPFKIVEFDIMYGKGISKSGVLLDTAVDLGIVEKAGSWYSYGDEKLGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           EN KI L EN ++A+ I+  +R+
Sbjct: 302 ENVKIMLEENADLAKLIDDKVRE 324


>gi|283953712|ref|ZP_06371243.1| RecA [Campylobacter jejuni subsp. jejuni 414]
 gi|283794753|gb|EFC33491.1| RecA [Campylobacter jejuni subsp. jejuni 414]
          Length = 342

 Score =  415 bits (1066), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/328 (63%), Positives = 263/328 (80%), Gaps = 3/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+AAL  + + +GKG I++LG +    E I+ + +GS+GLD+ALGIGG PKGRI+
Sbjct: 4   NKRKSLDAALKSLDKTFGKGTILRLGDKE--VEQIDSIGTGSVGLDLALGIGGVPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD  YA+ LGV+  +L +SQPD G
Sbjct: 62  EIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLGVNTDDLYVSQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSGAVD+IV+DSVAALTP+AEIEGDMG+   G+QARLMSQALRKLT  +
Sbjct: 122 EQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRKLTGIV 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R+V ++K  +   GN+
Sbjct: 182 HKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQNEEPIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PFKQ EFD+M+GEG+S  GELID GVK  IVDKSGAWFS+K ++LGQG
Sbjct: 242 VKVKVVKNKVAPPFKQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           RENSK FL+EN EIA+ I   ++ + G+
Sbjct: 302 RENSKAFLKENAEIADEITKAIQDSMGI 329


>gi|61097689|emb|CAI28921.1| recombinase A [Chromobacterium violaceum]
 gi|61097697|emb|CAI38693.1| recombinase A [Chromobacterium violaceum]
 gi|61097711|emb|CAI38700.1| recombinase A [Chromobacterium violaceum]
          Length = 285

 Score =  414 bits (1065), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 192/286 (67%), Positives = 247/286 (86%), Gaps = 1/286 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++ S   I E ++V+S+GSL LD+ALG+GG P+GR+VEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRM-SDNQITENLQVISTGSLTLDLALGVGGLPRGRVVEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  +A++QK GGTCA++DAE+ALD +YA+KLGV++++LLISQPDTGEQALEI DMLV
Sbjct: 60  TLCLQAVAEAQKLGGTCAYIDAENALDPVYAQKLGVNVEDLLISQPDTGEQALEICDMLV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RS  VD+IV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT +I R+  +++FIN
Sbjct: 120 RSSGVDVIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRTNTLVIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G IK  D + GN TRVKVVKNK++ 
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGGIKKGDEVIGNDTRVKVVKNKVSP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           PF+Q +F+I+YGEGIS  GE+I+LGVK   +DKSGAW+++ GQ++G
Sbjct: 240 PFRQADFEILYGEGISRQGEIIELGVKHGFIDKSGAWYAYNGQKIG 285


>gi|238018967|ref|ZP_04599393.1| hypothetical protein VEIDISOL_00827 [Veillonella dispar ATCC 17748]
 gi|237864451|gb|EEP65741.1| hypothetical protein VEIDISOL_00827 [Veillonella dispar ATCC 17748]
          Length = 346

 Score =  414 bits (1065), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/326 (62%), Positives = 266/326 (81%), Gaps = 1/326 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M +  +  AL+ AL QI++ +GKGAIM+LG        +EV+SSGSL +DIA+G+GGFP+
Sbjct: 1   MAVDGRQAALDNALKQIEKDFGKGAIMRLGEAADRMN-VEVISSGSLAIDIAVGVGGFPR 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++EIYGPESSGKTT+ALH +A++QK GG  AF+DAEHA+D +YAR LGVD+ NLLISQ
Sbjct: 60  GRVIEIYGPESSGKTTVALHAVAEAQKQGGIAAFIDAEHAMDPVYARNLGVDINNLLISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT+ LVRSGAVDI+V+DSVAAL P+AEI+G+MG++  G+QARLMS+ALRKL
Sbjct: 120 PDNGEQALEITEALVRSGAVDIVVVDSVAALVPKAEIDGEMGDAHVGLQARLMSKALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T  IS+SK +++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+R+   IK  +   
Sbjct: 180 TGIISKSKTVVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRKGELIKANNENV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T+VKVVKNK+A PFK  EFD+MYGEGIS  G LID+G    I++KSGAW+S+ G+R+
Sbjct: 240 GARTKVKVVKNKVAPPFKTAEFDLMYGEGISKAGTLIDIGTNMEIINKSGAWYSYNGERM 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332
           GQG+E +K +L +N +IA+ I+ ++R
Sbjct: 300 GQGKEAAKQYLLDNPQIADEIDRIIR 325


>gi|85858187|ref|YP_460389.1| recA protein [Syntrophus aciditrophicus SB]
 gi|123738761|sp|Q2LPL5|RECA_SYNAS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|85721278|gb|ABC76221.1| recA protein [Syntrophus aciditrophicus SB]
          Length = 343

 Score =  414 bits (1065), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/327 (63%), Positives = 272/327 (83%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D++KA++ A+SQI+R +GKG+IM+LG++  I E I V+ +G+L LDIALGIGG P+GRI+
Sbjct: 6   DRAKAVDLAISQIERQFGKGSIMRLGAKERI-EDIAVIPTGALSLDIALGIGGVPRGRII 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPES GKTTLALH IA++QK  G  AF+DAEHALD  YARK+GV+  +LLISQPDTG
Sbjct: 65  EIFGPESGGKTTLALHIIAEAQKRNGLAAFIDAEHALDVSYARKIGVNTDDLLISQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+DI+V+DSVAAL P+AEIEG+MG++  G+QARLMSQALRKLT SI
Sbjct: 125 EQALEIAETLVRSGALDILVVDSVAALVPKAEIEGEMGDAQMGLQARLMSQALRKLTGSI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S   ++FINQ+RMKIGV FG+PETTTGGNALKFY+S+RLDIR+ GSIK    + G +T
Sbjct: 185 SKSNTTVIFINQLRMKIGVFFGNPETTTGGNALKFYASMRLDIRKSGSIKSGQDVIGMRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF++ EFDI++GEGIS  G+++DL  ++ IV+KSGAW+S+ G+R+GQGR
Sbjct: 245 KVKVVKNKVAPPFRETEFDILFGEGISKAGDILDLAAESGIVEKSGAWYSYGGERIGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           +N++ FL+E+ +I   IE  +R   GL
Sbjct: 305 DNTRNFLKEHPDILVRIEEQVRSEHGL 331


>gi|269798259|ref|YP_003312159.1| recA protein [Veillonella parvula DSM 2008]
 gi|294792120|ref|ZP_06757268.1| protein RecA [Veillonella sp. 6_1_27]
 gi|269094888|gb|ACZ24879.1| recA protein [Veillonella parvula DSM 2008]
 gi|294457350|gb|EFG25712.1| protein RecA [Veillonella sp. 6_1_27]
          Length = 346

 Score =  414 bits (1065), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/326 (62%), Positives = 266/326 (81%), Gaps = 1/326 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M +  +  AL+ AL QI++ +GKGAIM+LG        +EV+SSGSL +DIA+G+GGFP+
Sbjct: 1   MAVDGRQAALDNALKQIEKDFGKGAIMRLGEAADRMN-VEVISSGSLAIDIAVGVGGFPR 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++EIYGPESSGKTT+ALH +A++QK GG  AF+DAEHA+D +YAR LGVD+ NLLISQ
Sbjct: 60  GRVIEIYGPESSGKTTVALHAVAEAQKQGGIAAFIDAEHAMDPVYARNLGVDINNLLISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT+ LVRSGAVDI+V+DSVAAL P+AEI+G+MG++  G+QARLMS+ALRKL
Sbjct: 120 PDNGEQALEITEALVRSGAVDIVVVDSVAALVPKAEIDGEMGDAHVGLQARLMSKALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T  IS+SK +++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+R+   IK  +   
Sbjct: 180 TGIISKSKTVVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRKGELIKANNENV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T+VKVVKNK+A PFK  EFD+MYGEGIS  G LID+G    I++KSGAW+S+ G+R+
Sbjct: 240 GARTKVKVVKNKVAPPFKTAEFDLMYGEGISKTGTLIDIGTNMEIINKSGAWYSYNGERM 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332
           GQG+E +K +L +N +IA+ I+ ++R
Sbjct: 300 GQGKEAAKQYLLDNPQIADEIDRIIR 325


>gi|166079853|gb|ABY81648.1| recombinase A [Staphylococcus lugdunensis]
          Length = 320

 Score =  414 bits (1065), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 195/314 (62%), Positives = 251/314 (79%), Gaps = 2/314 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKGA+M+LG        +  VS+GS+ LD ALG+GG+PKGRI+E+YGPESSGKTT+
Sbjct: 1   EKSFGKGAVMKLGENKD--RRVSSVSTGSVTLDHALGVGGYPKGRIIEVYGPESSGKTTV 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALH IA+ QK GG  AF+DAEHALD +YA  LGVD+ NL +SQPD GEQ LEI +  VRS
Sbjct: 59  ALHAIAEVQKNGGIAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHGEQGLEIAEAFVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVDI+++DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+++IS+S    +FINQ+
Sbjct: 119 GAVDIVIVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSAAISKSNTTAIFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T++KVVKNK+A PF
Sbjct: 179 REKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRTKIKVVKNKVAPPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           K  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G+R+GQG+EN K FL+EN ++
Sbjct: 239 KVAEVDIMYGQGISREGELIDLGVQYDIVDKSGAWYSYNGERMGQGKENVKQFLKENPQL 298

Query: 324 AENIESLLRQNAGL 337
            + I+  LR+  G+
Sbjct: 299 EDEIDRKLREKLGI 312


>gi|323699013|ref|ZP_08110925.1| recA protein [Desulfovibrio sp. ND132]
 gi|323458945|gb|EGB14810.1| recA protein [Desulfovibrio desulfuricans ND132]
          Length = 355

 Score =  414 bits (1065), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 201/345 (58%), Positives = 268/345 (77%), Gaps = 5/345 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + +AL  AL+ I+R +GKG+IM+L  + S    I  + +GS+GLDIALGIGG P+GR++E
Sbjct: 12  RKEALGTALTTIERKFGKGSIMRLDDEAS--HSIPFIPTGSIGLDIALGIGGVPRGRVIE 69

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPESSGKTTLALH IAQ+QK GG  AFVDAEHALD  YA++LGV    LLISQPD GE
Sbjct: 70  IFGPESSGKTTLALHIIAQAQKRGGAAAFVDAEHALDPNYAKRLGVKTDELLISQPDYGE 129

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D+LVRSGA+D++VIDSVAAL P++E+EG MGE+  G QARLMS ALRKLT +I 
Sbjct: 130 QALEIADLLVRSGALDVVVIDSVAALIPQSELEGQMGETQVGGQARLMSHALRKLTGTIH 189

Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +S C+++FINQ+RMKIG+  +G+PETT+GGNALKFY+S RLDIRR+ ++KDK+   G + 
Sbjct: 190 KSNCVVIFINQIRMKIGMTGYGNPETTSGGNALKFYASCRLDIRRIQTLKDKEEAYGIRA 249

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PF+Q E D++YG+GIS  GE+ID+GV+  I++KSG+WF+F  ++LGQG+
Sbjct: 250 RIKVVKNKVAPPFRQAEVDVLYGQGISRMGEIIDMGVENGIIEKSGSWFAFGSEKLGQGK 309

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           EN +  L++N ++AE IE  L  + G     + ++ A  T D  D
Sbjct: 310 ENVRALLQDNPDLAEAIEEALMAHLGF--RDVPEDEAAPTPDAGD 352


>gi|313890419|ref|ZP_07824050.1| RecA protein [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121262|gb|EFR44370.1| RecA protein [Streptococcus pseudoporcinus SPIN 20026]
          Length = 380

 Score =  414 bits (1065), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 204/352 (57%), Positives = 267/352 (75%), Gaps = 6/352 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  DRRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAASLGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+R    IK     KDS  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRGNTQIKGTGEQKDSNI 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK  E +IMYGEGIS  GELI +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELIKIASDLDIIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           GQG EN+K FL ++ +I E I+  +R   GL+ D L QE  +    D   D+
Sbjct: 316 GQGSENAKKFLADHPDIFEEIDHKVRVKVGLLEDDLEQEEVVEPTLDQSTDE 367


>gi|3859862|gb|AAC72890.1| recA-like protein [Porphyromonas gingivalis]
          Length = 340

 Score =  414 bits (1065), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 195/322 (60%), Positives = 258/322 (80%), Gaps = 2/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K +AL  A  +I++ +GKGAIM +G+  +  E + V+ SGS+GLD+ALG+GG+P+GRI+E
Sbjct: 14  KLQALRMATEKIEKTFGKGAIMNMGA--NTVEDVSVIPSGSIGLDLALGVGGYPRGRIIE 71

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLA+H IA++QK GG  A +DAEHA D  YA KLGV++ NL I+QPD GE
Sbjct: 72  IYGPESSGKTTLAIHAIAEAQKAGGLAAIIDAEHAFDRTYAEKLGVNVDNLWIAQPDNGE 131

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI + L+RS AVDIIVIDSVA LTP+AEIEG+MG++  G+ ARLMSQALRK+T +IS
Sbjct: 132 QALEIAEQLIRSSAVDIIVIDSVAGLTPKAEIEGEMGDNKVGLHARLMSQALRKMTGAIS 191

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S    +FINQ+R KIGV+FG+PETTTGGNALKFY+S+R+DIR+   IKD + I G+ T+
Sbjct: 192 KSNTTCIFINQLREKIGVLFGNPETTTGGNALKFYASIRIDIRKSTPIKDGEEIMGHLTK 251

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV+KNK+A PF++ EFDI++GEGIS  GE+IDLGV+  I+ KSG+WFS+   +LGQGRE
Sbjct: 252 VKVLKNKVAPPFRKAEFDIVFGEGISRSGEIIDLGVELDIIKKSGSWFSYGDTKLGQGRE 311

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
            +K  +R+N E+AE +   +R+
Sbjct: 312 AAKEMIRDNEELAEELTEKIRE 333


>gi|218133715|ref|ZP_03462519.1| hypothetical protein BACPEC_01584 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991090|gb|EEC57096.1| hypothetical protein BACPEC_01584 [Bacteroides pectinophilus ATCC
           43243]
          Length = 372

 Score =  414 bits (1065), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 196/327 (59%), Positives = 264/327 (80%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+AA++ I++ +GKG +M+LG   +    +E V +GSLGLD+ALG+GG P+GR++
Sbjct: 5   DKLKALDAAINNIEKQFGKGTVMKLGDSSANMN-VETVPTGSLGLDLALGVGGLPRGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YA+ +GVD+ NL ISQPD G
Sbjct: 64  EIYGPESSGKTTVALHVVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQPDCG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ +VRSGAVDI+V+DSVAAL P+AEI+G+MG++  G QARLMSQA+RKLT   
Sbjct: 124 EQALEITETMVRSGAVDIVVVDSVAALVPKAEIDGNMGDATMGQQARLMSQAMRKLTPVA 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S + CI++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLD+RR+ +IK  D   GN  
Sbjct: 184 SSNNCIVIFINQIRQKIGVMFGNPETTTGGNALKFYASVRLDVRRITTIKSGDEAVGNHV 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PFK+ EFDIM+G+GIS  G++ID+  K  I+ KSG+WF++ G+++GQGR
Sbjct: 244 KVKVVKNKVAPPFKEAEFDIMFGKGISKSGDVIDIAAKDDIIQKSGSWFAYNGEKIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K +L E+ ++ E + + ++Q  G+
Sbjct: 304 ENAKKYLDEHPDVMEEVVAKVKQAHGI 330


>gi|260892529|ref|YP_003238626.1| recA protein [Ammonifex degensii KC4]
 gi|260864670|gb|ACX51776.1| recA protein [Ammonifex degensii KC4]
          Length = 346

 Score =  414 bits (1065), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 195/323 (60%), Positives = 259/323 (80%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ K LE  L+QI+R +GKGAIM+LG   S F+ +EV+ SGS+ LD+ALGIGGFP+GR+V
Sbjct: 3   DRQKMLETTLAQIERQFGKGAIMRLGEAASRFQ-VEVIPSGSIALDVALGIGGFPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTT+ALH +A++QK GG  AF+DAEHALD +YA+++GVD+ NLL+SQPDTG
Sbjct: 62  EIFGPESSGKTTVALHAVAEAQKMGGIAAFIDAEHALDPVYAQRVGVDVDNLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDIIV+DSVAAL PRAE+EG+MG++  G+QARLMSQALRKLT  I
Sbjct: 122 EQALEIAEALVRSGAVDIIVVDSVAALVPRAELEGEMGDAHVGLQARLMSQALRKLTGVI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++S+   +FINQ+R K+G  +G+PETT GG ALKFY+SVRL++R+V  IK      G + 
Sbjct: 182 AKSRTTAIFINQIREKVGA-YGNPETTPGGRALKFYASVRLEVRKVDDIKRGTEKIGTRV 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R +VVKNK+A PFKQ EFDI++GEGIS  G L+D  +   ++ K+G+W+S+   RLGQGR
Sbjct: 241 RARVVKNKLAPPFKQAEFDILFGEGISREGSLLDAALATKLITKTGSWYSYGDIRLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           EN + +L+E+ E+ + IE+ +RQ
Sbjct: 301 ENVREYLKEHPELFQEIENKIRQ 323


>gi|225174587|ref|ZP_03728585.1| recA protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169714|gb|EEG78510.1| recA protein [Dethiobacter alkaliphilus AHT 1]
          Length = 552

 Score =  414 bits (1065), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/330 (62%), Positives = 267/330 (80%), Gaps = 1/330 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N+++K KALE AL QI++ +GKG+IM+LG  G     + V+ +GSL LD+ALG+GGFP+G
Sbjct: 211 NMMEKQKALEMALMQIEKQFGKGSIMKLGDSGGRM-NLSVIPTGSLALDVALGVGGFPRG 269

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R++EIYGPESSGKTT+ALH IA++QK+GG  AF+DAEHALD +YA++LGV++  LL+SQP
Sbjct: 270 RVIEIYGPESSGKTTVALHAIAEAQKSGGFAAFIDAEHALDPVYAQRLGVNIDELLVSQP 329

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI + LVRSGA+D++V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+
Sbjct: 330 DTGEQALEIAESLVRSGAIDVVVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLS 389

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            +IS+S    +FINQ+R K+GVMFG+PE T GG ALKFY+SVR+D+RR  ++K  +   G
Sbjct: 390 GAISKSHTTAIFINQIREKVGVMFGNPEVTPGGRALKFYASVRIDVRRTETLKQGNEAVG 449

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+TR KV+KNK+A PFKQ EFDI+YGEGIS  G L+DLG    +V KSGAWFSF   RLG
Sbjct: 450 NRTRAKVLKNKVAPPFKQAEFDIVYGEGISREGTLLDLGCDMDLVQKSGAWFSFGDDRLG 509

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGL 337
           QGREN++ FL+EN +IA  IE  +R+  GL
Sbjct: 510 QGRENARQFLKENPDIALTIERKIREAYGL 539


>gi|303229424|ref|ZP_07316214.1| RecA protein [Veillonella atypica ACS-134-V-Col7a]
 gi|303230767|ref|ZP_07317514.1| RecA protein [Veillonella atypica ACS-049-V-Sch6]
 gi|302514527|gb|EFL56522.1| RecA protein [Veillonella atypica ACS-049-V-Sch6]
 gi|302515960|gb|EFL57912.1| RecA protein [Veillonella atypica ACS-134-V-Col7a]
          Length = 347

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/340 (60%), Positives = 270/340 (79%), Gaps = 8/340 (2%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M +  +  AL+ AL QI++ +GKGAIM+LG        +EV+SSGSL +D+A+G+GGFP+
Sbjct: 1   MAVDGRQAALDNALKQIEKDFGKGAIMRLGEAADRMN-VEVISSGSLAIDLAVGVGGFPR 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++EIYGPESSGKTT+ALH +A++QK GG  AF+DAEHA+D IYAR LGVD+ NLLISQ
Sbjct: 60  GRVIEIYGPESSGKTTVALHAVAEAQKQGGVAAFIDAEHAMDPIYARNLGVDINNLLISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT+ LVRSGAVDI+V+DSVAAL P+AEIEG+MG++  G+ ARLMS+ALRKL
Sbjct: 120 PDNGEQALEITEALVRSGAVDIVVVDSVAALVPKAEIEGEMGDAHVGLHARLMSKALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T +I+++K +++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+R+   IK  +   
Sbjct: 180 TGTINKTKTVVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRKGELIKANNENV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T+VKVVKNK+A PFK  EFD+MYG+GIS  G LID+G    I+ KSGAW+S+ G+R+
Sbjct: 240 GARTKVKVVKNKVAPPFKTAEFDLMYGQGISREGTLIDIGTNMEIIKKSGAWYSYNGERM 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           GQG+E +K +L +N ++AE I+ ++R       D+L  EP
Sbjct: 300 GQGKEAAKQYLFDNPQVAEEIDRIIR-------DTLAAEP 332


>gi|298529110|ref|ZP_07016513.1| recA protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510546|gb|EFI34449.1| recA protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 354

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/328 (62%), Positives = 266/328 (81%), Gaps = 3/328 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + +AL+ A++ I+R YG+G++M+L  +    + I  + +GS+GLD+ALGIGG P+GR+ E
Sbjct: 12  RKEALQTAITTIERKYGQGSVMRLSDEA--HQAIPSIPTGSIGLDLALGIGGIPRGRVSE 69

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH IA++QK GG  AF+DAEHALD  YA++LGV  + LL+SQPD GE
Sbjct: 70  IYGPESSGKTTLALHVIAEAQKKGGAAAFIDAEHALDVNYAKRLGVKTEELLVSQPDYGE 129

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D+LVRSG +D+IV+DSVAAL P+AE+EG MGES  G QARLMS A+RKLT +I 
Sbjct: 130 QALEIADLLVRSGGLDVIVVDSVAALIPQAELEGSMGESQVGGQARLMSHAMRKLTGTIH 189

Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           RSK  LVFINQ+RMKIG M +GSPETT+GGNALKFY+SVRLDIR++ ++KDKD + GN+ 
Sbjct: 190 RSKTSLVFINQIRMKIGSMGYGSPETTSGGNALKFYASVRLDIRKIQTLKDKDEVVGNRV 249

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VK VKNK+A PF++ +FDI+YG+GIS  GEL+D+GV+  +VDKSGAWF+F  +RLGQGR
Sbjct: 250 KVKTVKNKVAPPFRETQFDILYGQGISRAGELLDMGVEHGVVDKSGAWFAFGSERLGQGR 309

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338
           EN + FL++N EI +NIE+ L    G+V
Sbjct: 310 ENVRSFLQDNDEIRKNIENQLLTQLGVV 337


>gi|28971929|dbj|BAC65341.1| RecA [Campylobacter lari]
          Length = 344

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/349 (60%), Positives = 272/349 (77%), Gaps = 9/349 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+AAL  + + +GKG I++LG +    E I+ + +GS+GLD+ALGIGG PKGRI+
Sbjct: 4   NKRKSLDAALKSLDKTFGKGTILRLGDKE--VEKIDSIPTGSVGLDLALGIGGVPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD  YA+ LGVD +NL ISQPD G
Sbjct: 62  EIYGPESSGKTTLTLHIIAECQKKGGVCAFIDAEHALDVRYAKNLGVDTENLYISQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSGA+D+IV+DSVAALTP+AEIEGDMG+   G+QARLMSQALRKLT  +
Sbjct: 122 EQALEIVETIARSGAIDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRKLTGIV 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIG+M +G+PETTTGGNALKFY+SVRLD+R+  ++K  D   GN+
Sbjct: 182 HKMNTTVIFINQIRMKIGMMGYGTPETTTGGNALKFYASVRLDVRKTATLKQNDEPIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKV KNK+A PFKQ EFD+M+GEG+S  GELID GVK  I+DKSGAWFS+K  +LGQG
Sbjct: 242 VKVKVAKNKVAPPFKQAEFDVMFGEGVSREGELIDYGVKLDIIDKSGAWFSYKASKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           REN+K FL+EN  IA+ I   ++ + G+  DS++    +  K+D + D+
Sbjct: 302 RENAKAFLKENPAIADEITQAIQNSIGI--DSMI----LGAKEDDEGDE 344


>gi|239636972|ref|ZP_04677966.1| protein RecA [Staphylococcus warneri L37603]
 gi|239597322|gb|EEQ79825.1| protein RecA [Staphylococcus warneri L37603]
          Length = 348

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 199/327 (60%), Positives = 259/327 (79%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+  +  +++ +GKGA+M+LG        +   SSGS+ LD ALG+GG+PKGRI+
Sbjct: 4   ERQKALDTVIKNMEKSFGKGAVMKLGDNKGRR--VSSTSSGSVTLDNALGVGGYPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA++QK GG  AF+DAEHALD +YA+ LGVD+ NL +SQPD G
Sbjct: 62  EIYGPESSGKTTVALHAIAETQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI +  VRSGAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 122 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S    +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T
Sbjct: 182 SKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G+R+GQG+
Sbjct: 242 KIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENEIVDKSGAWYSYNGERMGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN K +L+EN +I + I+  LR+  G+
Sbjct: 302 ENVKTYLKENPQIKDEIDQKLREKLGI 328


>gi|22203529|gb|AAM92267.1| RecA [Bordetella hinzii]
          Length = 289

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/269 (74%), Positives = 235/269 (87%), Gaps = 1/269 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+ G    +   I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 22  QIEKQFGKGSIMRYGDN-EVEHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 80

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGTCAFVDAEHALD  YA KLGV+L +LLISQPDTGEQALEITD LV
Sbjct: 81  TLTLQVIAEMQKIGGTCAFVDAEHALDVQYASKLGVNLGDLLISQPDTGEQALEITDALV 140

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG+VD+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT++I R+ C+++FIN
Sbjct: 141 RSGSVDLIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTATIKRTNCMVIFIN 200

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK+A 
Sbjct: 201 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKGDEVVGNETRVKVVKNKVAP 260

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKAS 290
           PFKQ EFDIMYG GIS  GE+IDLGV  +
Sbjct: 261 PFKQAEFDIMYGAGISREGEIIDLGVPPT 289


>gi|291543504|emb|CBL16613.1| RecA protein [Ruminococcus sp. 18P13]
          Length = 411

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 199/355 (56%), Positives = 276/355 (77%), Gaps = 5/355 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL +A++ I+++YG GA+M+LG   ++   ++ + +GS+ LD+ALGIGG P+GRIV
Sbjct: 22  EKKKALASAIAHIEKMYGAGAVMKLGQTKAL--NVDAIPTGSMTLDLALGIGGVPRGRIV 79

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA++QK GG  AF+D EHALD +YA KLGV++ NLL+SQPD+G
Sbjct: 80  ELYGPESSGKTTVALHIIAEAQKLGGEVAFIDVEHALDPVYAEKLGVNINNLLVSQPDSG 139

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+D+IV+DSVAA+T +AEI+GDMG++  G  ARLMSQA+RKLTS I
Sbjct: 140 EQALEIAEALVRSGAIDVIVLDSVAAMTTKAEIDGDMGDNHVGQLARLMSQAMRKLTSVI 199

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++S C+ +FINQ+R KIGVM+G+PETT GG ALKFY+SVR+++R+  +IK+   I GN+T
Sbjct: 200 AKSNCVAIFINQIREKIGVMYGNPETTPGGRALKFYASVRMEVRKAEAIKNGSQIIGNRT 259

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFK+ EFDIM+G+GIS  GE++DL V   IV K G+WFS+K Q+LGQGR
Sbjct: 260 RVKIVKNKVAPPFKECEFDIMFGQGISRVGEVLDLAVDLDIVKKGGSWFSYKDQKLGQGR 319

Query: 311 ENSKIFLRENIEIAENIES-LLRQNAGLVADSLLQEPAINTKDDADK--DDTDNV 362
           +  K  L  + E+ + IE+ +L Q   L+  S   + + + K  AD+   DT+++
Sbjct: 320 DKVKEILANDPELMKEIEAQILEQKDKLLLVSKKSKKSADLKKAADEALADTEDI 374


>gi|224026225|ref|ZP_03644591.1| hypothetical protein BACCOPRO_02981 [Bacteroides coprophilus DSM
           18228]
 gi|224019461|gb|EEF77459.1| hypothetical protein BACCOPRO_02981 [Bacteroides coprophilus DSM
           18228]
          Length = 350

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/324 (62%), Positives = 264/324 (81%), Gaps = 2/324 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  +K KAL+AA+ +I++ +GKG+IM++G      + +EV+ +GS+ L+ ALG+GG+PKG
Sbjct: 21  NNSEKLKALQAAMDKIEKSFGKGSIMKMGDDH--VQEVEVIPTGSIALNAALGVGGYPKG 78

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQP
Sbjct: 79  RIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDIDNLWISQP 138

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++  G+QARLMSQALRKLT
Sbjct: 139 DNGEQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNRVGLQARLMSQALRKLT 198

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           S+IS++    +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   +KD + + G
Sbjct: 199 SAISKTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRANQLKDGEEVIG 258

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           NQ RVKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG +  I+ KSG+W+S+   +LG
Sbjct: 259 NQVRVKVVKNKVAPPFRKAEFDIMFGEGISRSGEIIDLGAELGIIKKSGSWYSYNDTKLG 318

Query: 308 QGRENSKIFLRENIEIAENIESLL 331
           QGR+ +K  +++N E+AE +E L+
Sbjct: 319 QGRDAAKQCIQDNPELAEELEGLI 342


>gi|262113632|emb|CBB11811.1| recombinase A [Francisella tularensis subsp. tularensis]
          Length = 323

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/312 (67%), Positives = 260/312 (83%), Gaps = 5/312 (1%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKGAIM+LG Q +  + I+V+ SG + LD+ALGIGG+PKGRI+EIYG ESSGKTTL L 
Sbjct: 2   FGKGAIMRLGDQEAAHD-IDVIPSGIIALDVALGIGGYPKGRIIEIYGHESSGKTTLTLL 60

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IAQ QK GGT AFVDAEHALD  YA+ LGVD+ NL++SQPDTGEQALEI DMLVRSG V
Sbjct: 61  AIAQCQKQGGTAAFVDAEHALDPKYAKLLGVDVDNLIVSQPDTGEQALEIADMLVRSGGV 120

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           DI+VIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT++I RS  +++FINQ+RMK
Sbjct: 121 DIVVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIKRSNTLVIFINQIRMK 180

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRL++++ GSIKD   ++GN+ +VKVVKNK+A PFKQ 
Sbjct: 181 IGVMFGNPETTTGGNALKFYSSVRLEVKKGGSIKDGIDVSGNEIKVKVVKNKVAPPFKQA 240

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI----E 322
           +F+++YGEGIS   ELIDLG K +I++KSGAW+S+KG+++GQG+E SK +L+EN     E
Sbjct: 241 DFELIYGEGISLEAELIDLGAKYNIIEKSGAWYSYKGKKIGQGKEKSKEYLKENTAERDE 300

Query: 323 IAENIESLLRQN 334
           I   I  LL  N
Sbjct: 301 IERAILELLLPN 312


>gi|228474992|ref|ZP_04059720.1| protein RecA [Staphylococcus hominis SK119]
 gi|314936554|ref|ZP_07843901.1| protein RecA [Staphylococcus hominis subsp. hominis C80]
 gi|228270977|gb|EEK12365.1| protein RecA [Staphylococcus hominis SK119]
 gi|313655173|gb|EFS18918.1| protein RecA [Staphylococcus hominis subsp. hominis C80]
          Length = 348

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/327 (60%), Positives = 253/327 (77%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+  +  +++ +GKGA+M+LG             S +L  D ALG+GG+PKGRI+
Sbjct: 4   DRQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSVSSGSVTL--DNALGVGGYPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD +YA  LGVD+ NL +SQPD G
Sbjct: 62  EIYGPESSGKTTVALHAIAEVQKNGGVAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI +  VRSGAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 122 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S    +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T
Sbjct: 182 SKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G+R+GQG+
Sbjct: 242 KIKVVKNKVAPPFRIAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN K +L+EN +I + I+  LR+  G+
Sbjct: 302 ENVKTYLKENPQIKDEIDRKLREKLGI 328


>gi|257417292|ref|ZP_05594286.1| RecA recombinase [Enterococcus faecalis AR01/DG]
 gi|257159120|gb|EEU89080.1| RecA recombinase [Enterococcus faecalis ARO1/DG]
          Length = 348

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/337 (58%), Positives = 263/337 (78%), Gaps = 2/337 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ +GKG+IM+LG +    + I  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKVALDAALKKIEKNFGKGSIMKLGEKAD--QKISTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT++LH IA+ Q+ GGT AF+DAEHALD  YA KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVSLHAIAEVQRNGGTAAFIDAEHALDPQYAEKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGA+DI+VIDSVAAL PRAEI+G+MG S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAIDIVVIDSVAALVPRAEIDGEMGASHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY++VRL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKQGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+ V+  ++ KSGAW+ +K +R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGQGISQEGELLDMAVEKDLISKSGAWYGYKEERIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           EN+K ++ ++ E+   +  L+R   G+   S + E A
Sbjct: 302 ENAKQYMADHPEMMAEVSKLVRDAYGIGDGSTIIEEA 338


>gi|108762868|ref|YP_629698.1| recA protein [Myxococcus xanthus DK 1622]
 gi|1350556|sp|P48291|RECA1_MYXXA RecName: Full=Protein RecA 1; AltName: Full=Recombinase A 1
 gi|848994|gb|AAC37000.1| recA1 [Myxococcus xanthus]
 gi|108466748|gb|ABF91933.1| recA protein [Myxococcus xanthus DK 1622]
          Length = 342

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/320 (61%), Positives = 264/320 (82%), Gaps = 1/320 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
            + +K KA+ AA++ I++ +G+G++M LG +    + + V+ SGS+G+D ALG+GG+P+G
Sbjct: 3   KLAEKLKAVAAAVASIEKQFGRGSVMTLGGEAR-EQKVAVIPSGSVGVDRALGVGGYPRG 61

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R+VE++G ESSGKTTL LH IAQ Q  GG  AF+DAEHALD  YARKLGV ++ LL+SQP
Sbjct: 62  RVVEVFGNESSGKTTLTLHAIAQVQAAGGVAAFIDAEHALDVSYARKLGVRVEELLVSQP 121

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEIT+ LVRSGAVD+IV+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKLT
Sbjct: 122 DTGEQALEITEHLVRSGAVDLIVVDSVAALVPRAEIEGEMGDAHMGVQARLMSQALRKLT 181

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++SRS   ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR++IRR G+IKD D++ G
Sbjct: 182 GAVSRSGTCIIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMEIRRTGNIKDGDAVVG 241

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           ++ RVKVVKNK+A PF++ EFD+MYG GI   GE++DLGV   +++KSG++FS +G+R+G
Sbjct: 242 SKARVKVVKNKVAPPFQEAEFDLMYGSGIHRVGEVLDLGVATGLIEKSGSYFSLRGERIG 301

Query: 308 QGRENSKIFLRENIEIAENI 327
           QGRE +  +LRE+ ++ E +
Sbjct: 302 QGRERAAEWLREHPDVLEAL 321


>gi|15128571|dbj|BAB62717.1| recA [Campylobacter lari]
          Length = 345

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/334 (61%), Positives = 265/334 (79%), Gaps = 5/334 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+AAL  + + +GKG I++LG +    E I+ + +GS+GLD+ALGIGG PKGRI+
Sbjct: 4   NKRKSLDAALKSLDKTFGKGTILRLGDKE--VEKIDSIPTGSVGLDLALGIGGVPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD  YA+ LGVD +NL ISQPD G
Sbjct: 62  EIYGPESSGKTTLTLHIIAECQKKGGVCAFIDAEHALDVRYAKNLGVDTENLYISQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSGA+D+IV+DSVAALTP+AEIEGDMG+   G+QARLMSQALRKLT  +
Sbjct: 122 EQALEIVETIARSGAIDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRKLTGIV 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIG+M +G+PETTTGGNALKFY+SVRLD+R+  ++K  D   GN+
Sbjct: 182 HKMNTTVIFINQIRMKIGMMGYGTPETTTGGNALKFYASVRLDVRKTATLKQNDEPIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKV KNK+A PFKQ EFD+M+GEG+S  GELID GVK  I+DKSGAWFS+K  +LGQG
Sbjct: 242 VKVKVAKNKVAPPFKQAEFDVMFGEGVSREGELIDYGVKLDIIDKSGAWFSYKASKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343
           REN+K FL+EN  IA+ I   ++ + G+  DS++
Sbjct: 302 RENAKAFLKENPAIADEITQAIQNSIGI--DSMI 333


>gi|322380801|ref|ZP_08054907.1| recombinase A [Helicobacter suis HS5]
 gi|321146805|gb|EFX41599.1| recombinase A [Helicobacter suis HS5]
          Length = 341

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/324 (65%), Positives = 262/324 (80%), Gaps = 3/324 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KALE A+ QI + +GKGA+M+LG +    E IE  S+GSLGLD+ALGIGG PKGRIVE
Sbjct: 5   KQKALELAIKQIDKQFGKGALMRLGDKE--VEHIEATSTGSLGLDMALGIGGVPKGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTL LH IAQ+Q+ GGTCAF+DAEHALD  YA+KLGVD  NLLISQPDTGE
Sbjct: 63  VYGPESSGKTTLTLHIIAQAQREGGTCAFIDAEHALDVQYAKKLGVDTDNLLISQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           +ALEI + L RSGAVD+IV+DSVAALTPRAEIEGDMG+   G+QARLMSQALRK+T  + 
Sbjct: 123 EALEILETLARSGAVDVIVVDSVAALTPRAEIEGDMGDQHVGLQARLMSQALRKITGILH 182

Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +    L+FINQ+RMKIG M +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+ 
Sbjct: 183 KMNTTLIFINQIRMKIGTMGYGSPETTTGGNALKFYASVRIDIRRIATLKQNEHPIGNRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK+ EFDIMYG+GIS  GELID GVK  +++KSGAWFS+  ++LGQGR
Sbjct: 243 RVKVVKNKVAPPFKEAEFDIMYGDGISQAGELIDYGVKLEVIEKSGAWFSYLDKKLGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQN 334
           E +K+ L+ + ++A  I   +++ 
Sbjct: 303 EAAKLSLKNDGDLATEIAGKIKEK 326


>gi|189467481|ref|ZP_03016266.1| hypothetical protein BACINT_03870 [Bacteroides intestinalis DSM
           17393]
 gi|189435745|gb|EDV04730.1| hypothetical protein BACINT_03870 [Bacteroides intestinalis DSM
           17393]
          Length = 345

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/333 (60%), Positives = 270/333 (81%), Gaps = 4/333 (1%)

Query: 1   MDYRKEMNIV--DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIA 58
           +++  E  I   +K KAL+AA+ +I++ +GKG+IM++G +    E +EV+ +GS+GL++A
Sbjct: 7   LNFENENKIAPSEKLKALQAAMDKIEKSFGKGSIMKMGDES--VEQVEVIPTGSIGLNVA 64

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG+GG+P+GRI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD
Sbjct: 65  LGVGGYPRGRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVD 124

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           + NLLISQPD GEQALEI + L+RS A+DIIV+DSVAALTP+AEIEGDMG++  G+QARL
Sbjct: 125 VDNLLISQPDNGEQALEIAEQLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARL 184

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRKLT+++S+++   +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR   +
Sbjct: 185 MSQALRKLTAAVSKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQA 244

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IK+ D + G QT+VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG    I+ KSG+W
Sbjct: 245 IKNGDEVLGKQTKVKVVKNKVAPPFRRAEFDIMFGEGISRAGEIIDLGADLGIIKKSGSW 304

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLL 331
           FS+   +L QGR+ +K  + +N E+AE +E L+
Sbjct: 305 FSYNETKLAQGRDAAKQVVADNPELAEELEGLI 337


>gi|227524327|ref|ZP_03954376.1| recombination protein A [Lactobacillus hilgardii ATCC 8290]
 gi|227088558|gb|EEI23870.1| recombination protein A [Lactobacillus hilgardii ATCC 8290]
          Length = 380

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/347 (56%), Positives = 270/347 (77%), Gaps = 5/347 (1%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL+ AL  I++ +GKG+IM++G +      I  + +GSL LD ALG+GG+P+GRIVE+YG
Sbjct: 8   ALDKALKSIEKEFGKGSIMRMGDKADTQ--ISTIPTGSLALDEALGVGGYPRGRIVEVYG 65

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGEQ L
Sbjct: 66  PESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGL 125

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           +ITD LV SGA+DI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +IS++K
Sbjct: 126 QITDTLVTSGAIDIVVIDSVAALVPRAEIEGEMGDTHVGLQARLMSQALRKLSGTISKTK 185

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
            I +FINQ+R K+GVMFG+PETT GG ALKFY+++RL+IRR   IK+  +I GN+ R+KV
Sbjct: 186 TIAIFINQIREKVGVMFGNPETTPGGRALKFYATIRLEIRRAEQIKNGTNIIGNRVRIKV 245

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK+A PFK+ E DIMYG+GIS  GEL+D+ V   I+DKSG+W+S+  +R+GQGREN+K
Sbjct: 246 VKNKVAPPFKRAEVDIMYGKGISQSGELVDMAVDKDIIDKSGSWYSYGEERIGQGRENAK 305

Query: 315 IFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
            +L E+ ++ + +E  +R   G+  D+   +   +TKD ++ D   N
Sbjct: 306 GYLEEHQDMYKEVERKVRDAYGIPDDA---DTGNSTKDSSNDDKGTN 349


>gi|148887231|emb|CAM12782.1| recombinase A [Ochrobactrum thiophenivorans]
          Length = 259

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 193/229 (84%), Positives = 217/229 (94%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE V +GSL LDIALG+GG PKGRI+EIYGPESSGKTTLALHTIA++QK GG CAFVDAE
Sbjct: 5   IETVPTGSLSLDIALGVGGLPKGRIIEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAE 64

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIE
Sbjct: 65  HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIE 124

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+SLPG+QARLMSQALRKLT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALK
Sbjct: 125 GEMGDSLPGLQARLMSQALRKLTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALK 184

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           FY+SVRLDIRR+GSIK++D + GNQTRVKVVKNK+A PFKQVEFDIMYG
Sbjct: 185 FYASVRLDIRRIGSIKERDEVVGNQTRVKVVKNKLAPPFKQVEFDIMYG 233


>gi|295105861|emb|CBL03404.1| RecA protein [Gordonibacter pamelaeae 7-10-1-b]
          Length = 352

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/346 (59%), Positives = 263/346 (76%), Gaps = 10/346 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K+K L+    QI+  +G+G+IM+LG  G     I V+ +G+L LD ALGIGG P+GRI+
Sbjct: 4   EKAKMLKLTTDQIESKFGQGSIMKLGEDGKELN-IGVIPTGALPLDAALGIGGVPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTLAL  +A++Q  GG  AF+DAEHALD +YA +LGVD+  +LISQPDTG
Sbjct: 63  EVYGPESSGKTTLALQILAEAQAMGGIVAFIDAEHALDPVYAARLGVDIDEVLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D +V+DSVAAL PRAEIEG++G++  G+QARLMSQALRKL  S+
Sbjct: 123 EQALEICDMLVRSGAIDAVVVDSVAALVPRAEIEGEIGDTTVGLQARLMSQALRKLAGSL 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S    +FINQ+R KIGVMFG+PETTTGG ALKF+SSVR+DIRR+ SIK    ITGN+ 
Sbjct: 183 SKSNTTCIFINQLREKIGVMFGNPETTTGGRALKFFSSVRIDIRRIDSIKKDGEITGNRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R KVVKNK+A PFKQ EFD+MYGEGIS  G ++D+ V+A +  KSGAW+++  +RLGQGR
Sbjct: 243 RAKVVKNKVAPPFKQAEFDLMYGEGISREGCIVDMAVEAGVAKKSGAWYTYGEERLGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN-TKDDAD 355
           E +K  L+EN ++ E IE  +R+          + P I  T D+AD
Sbjct: 303 EAAKQTLKENPDLREEIELKVREA--------FEIPVITRTADEAD 340


>gi|61097691|emb|CAI38690.1| recombinase A [Chromobacterium violaceum]
 gi|61097701|emb|CAI38695.1| recombinase A [Chromobacterium pseudoviolaceum]
          Length = 285

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 191/286 (66%), Positives = 247/286 (86%), Gaps = 1/286 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++ S   I E ++V+S+GSL LD+ALG+GG P+GR+VEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRM-SDNQITENLQVISTGSLSLDLALGVGGLPRGRVVEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  +A++QK GGTCA++DAE+ALD +YA+KLGV++++LLISQPDTGEQALEI DMLV
Sbjct: 60  TLCLQVVAEAQKLGGTCAYIDAENALDPVYAQKLGVNVEDLLISQPDTGEQALEICDMLV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RS  VD+IV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT +I R+  +++FIN
Sbjct: 120 RSSGVDVIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRTNTLVIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G IK  + + GN TRVKVVKNK++ 
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGGIKKGEEVVGNDTRVKVVKNKVSP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           PF+Q +F+I+YGEGIS  GE+I+LGVK   +DKSGAW+++ GQ++G
Sbjct: 240 PFRQADFEILYGEGISRPGEIIELGVKHGFIDKSGAWYAYNGQKIG 285


>gi|193213774|ref|YP_001994973.1| recombinase A [Chloroherpeton thalassium ATCC 35110]
 gi|238692684|sp|B3QSD5|RECA_CHLT3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|193087251|gb|ACF12526.1| recA protein [Chloroherpeton thalassium ATCC 35110]
          Length = 357

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/310 (66%), Positives = 254/310 (81%), Gaps = 2/310 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K L  A+  +++ +GKGAIM+LG    +   + VVS+GS+ LD ALG+GG PKGRIV
Sbjct: 18  EKLKQLNLAVESLEKQFGKGAIMRLGDDAVV--QVPVVSTGSISLDYALGVGGLPKGRIV 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH IA++QK GG  AFVDAEHA D  YARKLG+D+K+LLISQP++G
Sbjct: 76  EIYGPESSGKTTLALHAIAEAQKAGGIAAFVDAEHAFDQSYARKLGIDIKSLLISQPESG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL IT+ LVRSGAVDIIV+DSVAAL P+AE+EG+MG+S  G+QARLMSQALRKLT +I
Sbjct: 136 EQALSITETLVRSGAVDIIVVDSVAALVPQAELEGEMGDSQMGLQARLMSQALRKLTGAI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S C+ +FINQ+R KIGVM+GSPETTTGG ALKFY+SVRLDIR++  IKD   I GN+T
Sbjct: 196 SKSNCVAIFINQLRDKIGVMYGSPETTTGGKALKFYASVRLDIRKIAQIKDGTEIVGNRT 255

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PFK VEFDI+YGEG+S  GELIDL V+  IV K+GAWFS++  +LGQGR
Sbjct: 256 KVKVVKNKVAPPFKTVEFDIIYGEGVSRIGELIDLAVELGIVKKAGAWFSYENDKLGQGR 315

Query: 311 ENSKIFLREN 320
           E  K  L+ +
Sbjct: 316 ETVKTLLKAD 325


>gi|325831354|ref|ZP_08164608.1| RecA protein [Eggerthella sp. HGA1]
 gi|325486608|gb|EGC89056.1| RecA protein [Eggerthella sp. HGA1]
          Length = 352

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 199/324 (61%), Positives = 255/324 (78%), Gaps = 1/324 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSK L+    QI+  +GKG+IM+ G  G     I V+ +G+L LD ALGIGG P+GRIV
Sbjct: 4   EKSKMLKLTTDQIETKFGKGSIMKFGEGGHDLN-IGVIPTGALPLDAALGIGGVPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTLAL  IA++Q  GG  AF+DAEHALD +YA +LGVD+  +LISQPDTG
Sbjct: 63  EVYGPESSGKTTLALQIIAEAQAMGGIVAFIDAEHALDPVYAARLGVDIDEVLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D +V+DSVAAL PRAEIEG++G++  G+QARLMSQALRKL  S+
Sbjct: 123 EQALEICDMLVRSGAIDAVVVDSVAALVPRAEIEGEIGDTTVGLQARLMSQALRKLAGSL 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S    +FINQ+R KIGVMFG+PETTTGG ALKF+SSVR+DIRR+ SIK    I GN+ 
Sbjct: 183 SKSNTTCIFINQLREKIGVMFGNPETTTGGRALKFFSSVRIDIRRIDSIKKDGEIVGNRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R KVVKNK+A PF+Q EFD+MYGEGIS  G ++D+ V+A +  KSGAW+++  +RLGQGR
Sbjct: 243 RAKVVKNKVAPPFRQAEFDLMYGEGISREGCIVDMAVEAGVAKKSGAWYTYGEERLGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQN 334
           E +K  L+EN ++ E +E+ +R++
Sbjct: 303 EAAKQTLKENPDLREELETKVRES 326


>gi|148925809|ref|ZP_01809497.1| recA protein [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145845819|gb|EDK22910.1| recA protein [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 343

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/328 (62%), Positives = 263/328 (80%), Gaps = 3/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+AAL  + + +GKG I++LG +    E I+ + +GS+GLD+ALGIGG PKGRI+
Sbjct: 4   NKRKSLDAALKSLDKTFGKGTILRLGDKE--VEQIDSIGTGSVGLDLALGIGGVPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD  YA+ LGV+  +L +SQPD G
Sbjct: 62  EIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLGVNTDDLYVSQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSGAVD+IV+DSVAALTP+AEIEGDMG+   G+QARLMSQALRKLT  +
Sbjct: 122 EQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRKLTGIV 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R+V ++K  +   GN+
Sbjct: 182 HKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQNEEPIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PF+Q EFD+M+GEG+S  GELID GVK  IVDKSGAWFS+K ++LGQG
Sbjct: 242 VKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           RENSK FL+EN EIA+ I   ++ + G+
Sbjct: 302 RENSKAFLKENPEIADEITKAIQNSMGI 329


>gi|227510184|ref|ZP_03940233.1| recombination protein A [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227513112|ref|ZP_03943161.1| recombination protein A [Lactobacillus buchneri ATCC 11577]
 gi|227083687|gb|EEI18999.1| recombination protein A [Lactobacillus buchneri ATCC 11577]
 gi|227190389|gb|EEI70456.1| recombination protein A [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 380

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/347 (56%), Positives = 270/347 (77%), Gaps = 5/347 (1%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL+ AL  I++ +GKG+IM++G +      I  + +GSL LD ALG+GG+P+GRIVE+YG
Sbjct: 8   ALDKALKSIEKEFGKGSIMRMGDKADTQ--ISTIPTGSLALDEALGVGGYPRGRIVEVYG 65

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGEQ L
Sbjct: 66  PESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGL 125

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           +ITD LV SGA+DI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +IS++K
Sbjct: 126 QITDALVTSGAIDIVVIDSVAALVPRAEIEGEMGDTHVGLQARLMSQALRKLSGTISKTK 185

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
            I +FINQ+R K+GVMFG+PETT GG ALKFY+++RL+IRR   IK+  +I GN+ R+KV
Sbjct: 186 TIAIFINQIREKVGVMFGNPETTPGGRALKFYATIRLEIRRAEQIKNGTNIIGNRVRIKV 245

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK+A PFK+ E DIMYG+GIS  GEL+D+ V   I+DKSG+W+S+  +R+GQGREN+K
Sbjct: 246 VKNKVAPPFKRAEVDIMYGKGISQSGELVDMAVDKDIIDKSGSWYSYGEERIGQGRENAK 305

Query: 315 IFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
            +L E+ ++ + +E  +R   G+  D+   +   +TKD ++ D   N
Sbjct: 306 GYLEEHQDMYKEVERKVRDAYGIPDDA---DTGNSTKDSSNDDKGTN 349


>gi|299144062|ref|ZP_07037142.1| protein RecA [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518547|gb|EFI42286.1| protein RecA [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 341

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/328 (63%), Positives = 268/328 (81%), Gaps = 2/328 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           ++K KALE A+SQI++ YGKG+IM+LG+   +   IE + +GSL LD++LG+GG PKGRI
Sbjct: 3   IEKKKALELAISQIEKQYGKGSIMKLGADSKL--DIETIPTGSLALDLSLGVGGIPKGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +E+YGPESSGKTTLALH +A+SQK GG  AF+DAEHALD  YA+ LGVD++NL++SQPDT
Sbjct: 61  IEVYGPESSGKTTLALHILAESQKMGGIGAFIDAEHALDPSYAKNLGVDVENLIVSQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + LVRS AVDI+++DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT +
Sbjct: 121 GEQALEIIESLVRSNAVDIVIVDSVAALVPKAEIEGEMGDSHIGLQARLMSQALRKLTGA 180

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I++SK  ++FINQ+R K+GVMFG+PETTTGG ALKFYSS+RL+IR+V ++K  + I GN+
Sbjct: 181 INKSKASVIFINQLREKVGVMFGNPETTTGGRALKFYSSIRLEIRKVENLKLGEEIVGNR 240

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            RVKVVKNK+A PFKQ EFDIMYG+GIS  G LID+GV+  +V KSGAW+S+   RLGQG
Sbjct: 241 VRVKVVKNKVAPPFKQAEFDIMYGKGISKEGTLIDVGVQTDVVTKSGAWYSYGEHRLGQG 300

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           REN+K FL  N +I+  IE  ++    L
Sbjct: 301 RENAKEFLLANPDISREIEMKIKDKYNL 328


>gi|20178053|sp|Q93R37|RECA_CAMLA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|15128569|dbj|BAB62716.1| recA [Campylobacter lari]
          Length = 344

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/349 (60%), Positives = 272/349 (77%), Gaps = 9/349 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+AAL  + + +GKG I++LG +    E I+ + +GS+GLD+ALGIGG PKGRI+
Sbjct: 4   NKRKSLDAALKSLDKTFGKGTILRLGDKE--VEKIDSIPTGSVGLDLALGIGGVPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD  YA+ LGVD +NL ISQPD G
Sbjct: 62  EIYGPESSGKTTLTLHIIAECQKKGGVCAFIDAEHALDVKYAKDLGVDTENLYISQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSGA+D+IV+DSVAALTP+AEIEGDMG+   G+QARLMSQALR+LT  +
Sbjct: 122 EQALEIVETIARSGAIDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRELTGIV 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIG+M +G+PETTTGGNALKFYSSVRLD+R+  ++K  D   GN+
Sbjct: 182 HKMNTTVIFINQIRMKIGMMGYGTPETTTGGNALKFYSSVRLDVRKTATLKQNDEPIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKV KNK+A PFKQ EFD+M+GEG+S  GELID GVK  I+DKSGAWFS+K  +LGQG
Sbjct: 242 VKVKVAKNKVAPPFKQAEFDVMFGEGVSREGELIDYGVKLDIIDKSGAWFSYKASKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           REN+K FL+EN  IA+ I   ++ + G+  DS++    +  K+D + D+
Sbjct: 302 RENAKAFLKENPAIADEITQAIQNSIGI--DSMI----LGAKEDDEGDE 344


>gi|212550399|ref|YP_002308716.1| recombinase A [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212548637|dbj|BAG83305.1| recombinase A [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 357

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/318 (64%), Positives = 259/318 (81%), Gaps = 2/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ +AL  A  +I++ +GKG+IM++G      E I V+ +GS+ L+IALG+GG+P+GRI+
Sbjct: 19  DRLEALRIATDKIEKNFGKGSIMKMGDNA--IEEISVIPTGSISLNIALGVGGYPRGRII 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLA+H IA++QKTGG  AF+DAEHA D  YA KLGVD+ NL ISQPD+G
Sbjct: 77  EIYGPESSGKTTLAIHAIAEAQKTGGIAAFIDAEHAFDRFYAEKLGVDINNLWISQPDSG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L+RS A+DIIVIDSVAALTP+AE+EG+MGES  G+QARLMSQALRKLTS+I
Sbjct: 137 EQALEIGEQLIRSSAIDIIVIDSVAALTPKAELEGEMGESKMGLQARLMSQALRKLTSTI 196

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++    +FINQ+R KIGV+FG+PETTTGGNALKFYSSVRLDIR+  +IKD D + GNQT
Sbjct: 197 SKTNTTCIFINQLRDKIGVIFGNPETTTGGNALKFYSSVRLDIRKASAIKDGDEVKGNQT 256

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF++ EFDIM+ EGIS  GELIDLG +  I+ KSG+W+S+   +LGQGR
Sbjct: 257 KVKVVKNKVAPPFRKAEFDIMFKEGISKTGELIDLGTEWEIIKKSGSWYSYNDVKLGQGR 316

Query: 311 ENSKIFLRENIEIAENIE 328
           E SK +L+   E+ E IE
Sbjct: 317 EASKDYLKNKPELMEKIE 334


>gi|325298694|ref|YP_004258611.1| Protein recA [Bacteroides salanitronis DSM 18170]
 gi|324318247|gb|ADY36138.1| Protein recA [Bacteroides salanitronis DSM 18170]
          Length = 350

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/324 (62%), Positives = 265/324 (81%), Gaps = 2/324 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  ++ KAL+AA+ +I++ +GKG+IM++G      E +EV+ +GS+ L+ ALG+GG+PKG
Sbjct: 21  NNSERLKALQAAMDKIEKSFGKGSIMKMGDDH--VEEVEVIPTGSIALNAALGVGGYPKG 78

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQP
Sbjct: 79  RIIEIYGPESSGKTTLAIHAIAEAQKLGGIAAFIDAEHAFDRFYAAKLGVDIDNLWISQP 138

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++  G+QARLMSQALRKLT
Sbjct: 139 DNGEQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLT 198

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           S+IS++    +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR+  +KD + + G
Sbjct: 199 SAISKTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRISQLKDGEDVIG 258

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           NQ RVKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG +  I+ KSG+W+S+   +LG
Sbjct: 259 NQVRVKVVKNKVAPPFRKAEFDIMFGEGISRSGEIIDLGSELGIIKKSGSWYSYNDTKLG 318

Query: 308 QGRENSKIFLRENIEIAENIESLL 331
           QGR+ +K  +++N E+AE +E L+
Sbjct: 319 QGRDAAKQCIQDNPELAEELEGLI 342


>gi|57238684|ref|YP_179815.1| recombinase A [Campylobacter jejuni RM1221]
 gi|86149428|ref|ZP_01067659.1| recA protein [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|86152335|ref|ZP_01070546.1| recA protein [Campylobacter jejuni subsp. jejuni 260.94]
 gi|86152611|ref|ZP_01070816.1| recA protein [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|88596829|ref|ZP_01100066.1| recA protein [Campylobacter jejuni subsp. jejuni 84-25]
 gi|121612592|ref|YP_001001316.1| recombinase A [Campylobacter jejuni subsp. jejuni 81-176]
 gi|157415892|ref|YP_001483148.1| recombinase A [Campylobacter jejuni subsp. jejuni 81116]
 gi|167006209|ref|ZP_02271967.1| recA protein [Campylobacter jejuni subsp. jejuni 81-176]
 gi|205355691|ref|ZP_03222461.1| RecA protein [Campylobacter jejuni subsp. jejuni CG8421]
 gi|218563261|ref|YP_002345041.1| recombinase A [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|315125067|ref|YP_004067071.1| recombinase A [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
 gi|76363322|sp|Q5HSC0|RECA_CAMJR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123042670|sp|Q0P7V6|RECA_CAMJE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|146325678|sp|A1W1S5|RECA_CAMJJ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|172047205|sp|A8FNY4|RECA_CAMJ8 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|57167488|gb|AAW36267.1| RecA [Campylobacter jejuni RM1221]
 gi|85840210|gb|EAQ57468.1| recA protein [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|85840824|gb|EAQ58075.1| recA protein [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85843496|gb|EAQ60706.1| recA protein [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|87249761|gb|EAQ72720.1| recA protein [Campylobacter jejuni subsp. jejuni 81-176]
 gi|88191670|gb|EAQ95642.1| recA protein [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112360968|emb|CAL35769.1| recA protein [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|157386856|gb|ABV53171.1| recA protein [Campylobacter jejuni subsp. jejuni 81116]
 gi|205346468|gb|EDZ33101.1| RecA protein [Campylobacter jejuni subsp. jejuni CG8421]
 gi|284926866|gb|ADC29218.1| recA protein [Campylobacter jejuni subsp. jejuni IA3902]
 gi|307748529|gb|ADN91799.1| Protein recA [Campylobacter jejuni subsp. jejuni M1]
 gi|315018789|gb|ADT66882.1| recombinase A [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
 gi|315059123|gb|ADT73452.1| RecA protein [Campylobacter jejuni subsp. jejuni S3]
 gi|315927577|gb|EFV06908.1| protein RecA [Campylobacter jejuni subsp. jejuni DFVF1099]
 gi|315930237|gb|EFV09351.1| recombinase A [Campylobacter jejuni subsp. jejuni 305]
 gi|315931363|gb|EFV10332.1| protein RecA [Campylobacter jejuni subsp. jejuni 327]
          Length = 343

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/328 (62%), Positives = 263/328 (80%), Gaps = 3/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+AAL  + + +GKG I++LG +    E I+ + +GS+GLD+ALGIGG PKGRI+
Sbjct: 4   NKRKSLDAALKSLDKTFGKGTILRLGDKE--VEQIDSIGTGSVGLDLALGIGGVPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD  YA+ LGV+  +L +SQPD G
Sbjct: 62  EIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLGVNTDDLYVSQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSGAVD+IV+DSVAALTP+AEIEGDMG+   G+QARLMSQALRKLT  +
Sbjct: 122 EQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRKLTGIV 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R+V ++K  +   GN+
Sbjct: 182 HKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQNEEPIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PF+Q EFD+M+GEG+S  GELID GVK  IVDKSGAWFS+K ++LGQG
Sbjct: 242 VKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           RENSK FL+EN EIA+ I   ++ + G+
Sbjct: 302 RENSKAFLKENPEIADEITKAIQNSMGI 329


>gi|313681177|ref|YP_004058915.1| reca protein [Sulfuricurvum kujiense DSM 16994]
 gi|313154037|gb|ADR32715.1| RecA protein [Sulfuricurvum kujiense DSM 16994]
          Length = 346

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/343 (58%), Positives = 264/343 (76%), Gaps = 3/343 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K K+LE A+ QI + +GKG +M+LG +    E I  +S+GS+GLD+ALGIGG P+GR++E
Sbjct: 6   KLKSLELAMKQIDKTFGKGTLMRLGDKE--IEPINSISTGSIGLDLALGIGGVPEGRVIE 63

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL+L   A+ QK GG CAF+DAEHALD  YA+ LGVD++NLL+SQPD GE
Sbjct: 64  IYGPESSGKTTLSLQITAECQKNGGVCAFIDAEHALDIGYAKNLGVDVENLLVSQPDYGE 123

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL+I + +VRSGAVD+IVIDSVAALTP+ EIEG+M +   G+QARLMS+ALRKLT  + 
Sbjct: 124 QALDIVETIVRSGAVDLIVIDSVAALTPKVEIEGEMNDQQVGVQARLMSKALRKLTGIMH 183

Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +  C ++FINQ+RMKIG M +GSPETTTGGNALKFY+SVR+D+R++ ++K  +S  GN+ 
Sbjct: 184 KMNCTIIFINQIRMKIGTMGYGSPETTTGGNALKFYASVRIDVRKIATLKQGESQIGNRV 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           + KV+KNK+A PF+Q EFDIM+GEGIS  GEL+D GVK  I+DKSGAWFSF+  +LGQGR
Sbjct: 244 KAKVIKNKVAPPFRQAEFDIMFGEGISKEGELVDYGVKLDIIDKSGAWFSFEDVKLGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           EN K   ++  E+A  +E  ++   G+     + E  I+  D+
Sbjct: 304 ENVKQKFKDEPELARKVEEKIKSAMGVSGIIAMDESDISEVDE 346


>gi|283957058|ref|ZP_06374530.1| recA protein [Campylobacter jejuni subsp. jejuni 1336]
 gi|283791559|gb|EFC30356.1| recA protein [Campylobacter jejuni subsp. jejuni 1336]
          Length = 343

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/328 (62%), Positives = 263/328 (80%), Gaps = 3/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+AAL  + + +GKG I++LG +    E I+ + +GS+GLD+ALGIGG PKGRI+
Sbjct: 4   NKRKSLDAALKSLDKTFGKGTILRLGDKE--VEQIDSIGTGSVGLDLALGIGGVPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD  YA+ LGV+  +L +SQPD G
Sbjct: 62  EIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLGVNTDDLYVSQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSGAVD+IV+DSVAALTP+AEIEGDMG+   G+QARLMSQALRKLT  +
Sbjct: 122 EQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRKLTGIV 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R+V ++K  +   GN+
Sbjct: 182 HKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQNEEPIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PF+Q EFD+M+GEG+S  GELID GVK  IVDKSGAWFS+K ++LGQG
Sbjct: 242 VKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           RENSK FL+EN EIA+ I   ++ + G+
Sbjct: 302 RENSKAFLKENPEIADEITKAIQNSMGI 329


>gi|300122439|emb|CBK23010.2| Recombinase A protein (RecA) [Blastocystis hominis]
          Length = 398

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 193/322 (59%), Positives = 256/322 (79%), Gaps = 2/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K  AL+ A+ Q++  +GKG++M+LGS+  +   + V+S+GSL +D ALGIGG P+GRIVE
Sbjct: 46  KELALKNAIKQLETQFGKGSVMKLGSKSHL--DVPVISTGSLTVDHALGIGGLPRGRIVE 103

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALHT+A+ QKTGGTC F+DAEHALD +YA K+GV++ +L ISQPD+GE
Sbjct: 104 IYGPESSGKTTLALHTVAELQKTGGTCTFIDAEHALDPLYASKIGVNINDLYISQPDSGE 163

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSGA+D+IV+DSVAAL P+AE EG+MG++   +QARLMSQALRK+T S+S
Sbjct: 164 QALEIADCLVRSGAMDMIVVDSVAALVPKAEAEGNMGDAHMALQARLMSQALRKITGSLS 223

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           RS C+L+FINQ+R K+G++FG+PE T GGNALKFYSSVRLDIRR  +IK+ D + G +T 
Sbjct: 224 RSNCLLIFINQIRQKVGILFGNPEVTPGGNALKFYSSVRLDIRRKTAIKEGDEVIGYETV 283

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF+   FD+M+G GIS  GE++DL ++  I+ K GAW S++G+   QGR 
Sbjct: 284 VKVVKNKLAPPFRTASFDMMFGTGISKTGEILDLAIEDGIIQKKGAWLSYQGENFAQGRA 343

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
            +K +L  N E+  ++E  LR+
Sbjct: 344 KAKEYLMANEELCRSLEEQLRE 365


>gi|257791370|ref|YP_003181976.1| recA protein [Eggerthella lenta DSM 2243]
 gi|317490511|ref|ZP_07948990.1| recA bacterial DNA recombination protein [Eggerthella sp.
           1_3_56FAA]
 gi|257475267|gb|ACV55587.1| recA protein [Eggerthella lenta DSM 2243]
 gi|316910387|gb|EFV32017.1| recA bacterial DNA recombination protein [Eggerthella sp.
           1_3_56FAA]
          Length = 352

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 199/324 (61%), Positives = 255/324 (78%), Gaps = 1/324 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSK L+    QI+  +GKG+IM+ G  G     I V+ +G+L LD ALGIGG P+GRIV
Sbjct: 4   EKSKMLKLTTDQIETKFGKGSIMKFGEGGHDLN-IGVIPTGALPLDAALGIGGVPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTLAL  IA++Q  GG  AF+DAEHALD +YA +LGVD+  +LISQPDTG
Sbjct: 63  EVYGPESSGKTTLALQIIAEAQAMGGIVAFIDAEHALDPVYAARLGVDIDEVLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D +V+DSVAAL PRAEIEG++G++  G+QARLMSQALRKL  S+
Sbjct: 123 EQALEICDMLVRSGAIDAVVVDSVAALVPRAEIEGEIGDTTVGLQARLMSQALRKLAGSL 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S    +FINQ+R KIGVMFG+PETTTGG ALKF+SSVR+DIRR+ SIK    I GN+ 
Sbjct: 183 SKSNTTCIFINQLREKIGVMFGNPETTTGGRALKFFSSVRIDIRRIDSIKKDGEIVGNRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R KVVKNK+A PF+Q EFD+MYGEGIS  G ++D+ V+A +  KSGAW+++  +RLGQGR
Sbjct: 243 RAKVVKNKVAPPFRQAEFDLMYGEGISREGCIVDMAVEAGVAKKSGAWYTYGEERLGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQN 334
           E +K  L+EN ++ E +E+ +R++
Sbjct: 303 EAAKQTLKENPDLREELETKVRES 326


>gi|70726629|ref|YP_253543.1| recombinase A [Staphylococcus haemolyticus JCSC1435]
 gi|76363342|sp|Q4L5Y8|RECA_STAHJ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|68447353|dbj|BAE04937.1| RecA protein [Staphylococcus haemolyticus JCSC1435]
          Length = 348

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/327 (59%), Positives = 252/327 (77%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+  +  +++ +GKGA+M+LG             S +L  D ALG+GG+PKGRI+
Sbjct: 4   DRQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSVSSGSVTL--DNALGVGGYPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD +YA  LGVD+ NL +SQPD G
Sbjct: 62  EIYGPESSGKTTVALHAIAEVQKNGGVAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI +  VRSGAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 122 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S    +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T
Sbjct: 182 SKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYG+GIS  GE+IDLGV+  IVDKSGAW+S+ G R+GQG+
Sbjct: 242 KIKVVKNKVAPPFRVAEVDIMYGQGISKEGEVIDLGVENDIVDKSGAWYSYNGDRMGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN K +L+EN ++ E I+  LR+  G+
Sbjct: 302 ENVKTYLKENPQVKEEIDRKLREKLGI 328


>gi|329955571|ref|ZP_08296479.1| RecA protein [Bacteroides clarus YIT 12056]
 gi|328525974|gb|EGF52998.1| RecA protein [Bacteroides clarus YIT 12056]
          Length = 345

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/325 (62%), Positives = 267/325 (82%), Gaps = 2/325 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K KAL+AA+ +I++ +GKG+IM++G +    E +EV+ +GS+GL++ALG+GG+P+
Sbjct: 15  MAASEKLKALQAAMDKIEKSFGKGSIMKMGDES--VEQVEVIPTGSIGLNVALGVGGYPR 72

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NLLISQ
Sbjct: 73  GRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLLISQ 132

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI + L+RS A+DIIV+DSVAALTP+AEIEGDMG++  G+QARLMSQALRKL
Sbjct: 133 PDNGEQALEIAEQLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKL 192

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++S+++   +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR   +IK+ + + 
Sbjct: 193 TSAVSKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQAIKNGEEVI 252

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G QT+VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG +  IV KSG+WFS+   ++
Sbjct: 253 GKQTKVKVVKNKVAPPFRRAEFDIMFGEGISRAGEIIDLGAELGIVKKSGSWFSYNDTKI 312

Query: 307 GQGRENSKIFLRENIEIAENIESLL 331
            QGR+ +K  + +N E+AE +E L+
Sbjct: 313 AQGRDAAKQVILDNPELAEELEGLI 337


>gi|325971208|ref|YP_004247399.1| protein recA [Spirochaeta sp. Buddy]
 gi|324026446|gb|ADY13205.1| Protein recA [Spirochaeta sp. Buddy]
          Length = 361

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/322 (61%), Positives = 263/322 (81%), Gaps = 2/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K +ALEAA  QI + +GKG++M+LG      + I  +SSGSL LD ALGIGG+PKGR++E
Sbjct: 16  KREALEAARIQIDKQFGKGSLMKLGDSDESLD-IGYISSGSLLLDEALGIGGYPKGRVIE 74

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH IA+SQK GG  AF+DAEHA+D  YA+KLGV++  L ISQPD+GE
Sbjct: 75  IYGPESSGKTTLALHAIAESQKAGGIAAFIDAEHAMDPSYAKKLGVNIDELWISQPDSGE 134

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI + LVRSGAVDIIV+DSVAALTP+AEI+GDMG+S  G+QARLMSQALRKLT  +S
Sbjct: 135 QALEIAESLVRSGAVDIIVVDSVAALTPQAEIDGDMGDSHMGLQARLMSQALRKLTGLLS 194

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI-KDKDSITGNQT 250
           +S   ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+++R++ S+ K  D I GN+ 
Sbjct: 195 KSNTTIIFINQIRMKIGVMFGNPETTTGGNALKFYASVRIEVRKIESLSKGADDIIGNRV 254

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK++ PFK+VE D+++GEGIS+   ++D  +K  +++KSG+W+SF G+++GQGR
Sbjct: 255 RIKVVKNKVSPPFKKVELDLLFGEGISYVASVLDAALKYEMLEKSGSWYSFNGEKIGQGR 314

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           + +  FL++N ++  +++  LR
Sbjct: 315 DKTLDFLKDNPDVVADLDVKLR 336


>gi|329961403|ref|ZP_08299526.1| RecA protein [Bacteroides fluxus YIT 12057]
 gi|328531880|gb|EGF58703.1| RecA protein [Bacteroides fluxus YIT 12057]
          Length = 345

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 201/321 (62%), Positives = 265/321 (82%), Gaps = 2/321 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AA+ +I++ +GKG+IM++G +    E +EV+ +GS+GL++ALG+GG+P+GRI+
Sbjct: 19  EKLKALQAAMDKIEKSFGKGSIMKMGDES--VEQVEVIPTGSIGLNVALGVGGYPRGRII 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NLLISQPD G
Sbjct: 77  EIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLLISQPDNG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L+RS A+DIIV+DSVAALTP+AEIEGDMG++  G+QARLMSQALRKLTS++
Sbjct: 137 EQALEIAEQLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTSAV 196

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+++   +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR   +IK+ D + G QT
Sbjct: 197 SKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQAIKNGDEVIGKQT 256

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG    I+ KSG+WFS+   ++ QGR
Sbjct: 257 KVKVVKNKVAPPFRRAEFDIMFGEGISRAGEIIDLGADLGIIKKSGSWFSYNDTKIAQGR 316

Query: 311 ENSKIFLRENIEIAENIESLL 331
           + +K  + +N E+AE +E L+
Sbjct: 317 DAAKQVILDNPELAEELEGLI 337


>gi|61097693|emb|CAI38691.1| recombinase A [Chromobacterium violaceum]
 gi|61097695|emb|CAI38692.1| recombinase A [Chromobacterium violaceum]
 gi|61097699|emb|CAI38694.1| recombinase A [Chromobacterium violaceum]
 gi|61097705|emb|CAI38697.1| recombinase A [Chromobacterium violaceum]
 gi|61097709|emb|CAI38699.1| recombinase A [Chromobacterium violaceum]
          Length = 285

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 191/286 (66%), Positives = 247/286 (86%), Gaps = 1/286 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++ S   I E ++V+S+GSL LD+ALG+GG P+GR+VEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRM-SDNQITENLQVISTGSLTLDLALGVGGLPRGRVVEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  +A++QK GGTCA++DAE+ALD +YA+KLGV++++LLISQPDTGEQALEI DMLV
Sbjct: 60  TLCLQAVAEAQKLGGTCAYIDAENALDPVYAQKLGVNVEDLLISQPDTGEQALEICDMLV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RS  VD+IV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT +I R+  +++FIN
Sbjct: 120 RSSGVDVIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRTNTLVIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G IK  + + GN TRVKVVKNK++ 
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGGIKKGEEVIGNDTRVKVVKNKVSP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           PF+Q +F+I+YGEGIS  GE+I+LGVK   +DKSGAW+++ GQ++G
Sbjct: 240 PFRQADFEILYGEGISRQGEIIELGVKHGFIDKSGAWYAYNGQKIG 285


>gi|282878416|ref|ZP_06287202.1| RecA protein [Prevotella buccalis ATCC 35310]
 gi|281299402|gb|EFA91785.1| RecA protein [Prevotella buccalis ATCC 35310]
          Length = 341

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/322 (62%), Positives = 264/322 (81%), Gaps = 2/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+AA+++I++ +GKGAIM++G +      +EV+ +GS+ LD+ALG+GG+P+GRI+E
Sbjct: 15  KLKALQAAMAKIEKDFGKGAIMRMGDEQ--IADVEVIPTGSIALDVALGVGGYPRGRIIE 72

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD GE
Sbjct: 73  IFGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDNGE 132

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RS A+DI+V+DSVAALTP+ EIEGDMG+S  G+QARLMSQALRKLTS+IS
Sbjct: 133 QALEIADQLIRSSAIDILVVDSVAALTPKKEIEGDMGDSNVGLQARLMSQALRKLTSTIS 192

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGV+FGSPETTTGGNALKFY+SVRLDIR+  S+KD D + GNQ R
Sbjct: 193 KTNTTCIFINQLREKIGVLFGSPETTTGGNALKFYASVRLDIRKKSSVKDGDEVLGNQVR 252

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF++ EF+I +GEGIS  GE++DLGV+  I+ KSG+W+S++  +L QGR+
Sbjct: 253 VKVVKNKVAPPFRKAEFEITFGEGISKIGEIVDLGVEYDIIKKSGSWYSYQDSKLAQGRD 312

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
            +K  L++N E+ E +E  ++Q
Sbjct: 313 ATKNLLKDNPELCEELEVKIKQ 334


>gi|169827199|ref|YP_001697357.1| recombinase A [Lysinibacillus sphaericus C3-41]
 gi|168991687|gb|ACA39227.1| Protein recA (Recombinase A) [Lysinibacillus sphaericus C3-41]
          Length = 329

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 198/309 (64%), Positives = 250/309 (80%), Gaps = 2/309 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG +  +   I   SSGSL LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH IA+ Q
Sbjct: 1   MKLGEKTDLE--IATSSSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEVQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
             GG  AF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI + LVRSGA+DIIVID
Sbjct: 59  AKGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ SI++SK I +FINQ+R KIGVMFG
Sbjct: 119 SVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGSINKSKTIAIFINQIREKIGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETT GG ALKFYSSVRL++RR  +IK  + I GN+T++K+VKNK+A PF+  E DIMY
Sbjct: 179 NPETTPGGRALKFYSSVRLEVRRAEAIKQGNDIVGNRTKIKIVKNKVAPPFRTAEVDIMY 238

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           GEGIS  GE +DLGV+  IV KSG+W+++  +RLGQGREN+K +L+EN  + E+I + +R
Sbjct: 239 GEGISKEGETVDLGVELDIVQKSGSWYAYGDERLGQGRENAKQYLKENPAVLEDISNKIR 298

Query: 333 QNAGLVADS 341
            + G+ A S
Sbjct: 299 SSYGIAASS 307


>gi|73662789|ref|YP_301570.1| recombinase A [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
 gi|123775345|sp|Q49X73|RECA_STAS1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|72495304|dbj|BAE18625.1| RecA recombinase [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
          Length = 349

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 201/327 (61%), Positives = 258/327 (78%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+  +  +++ +GKGA+M+LG   +    +  VSSGS+ LD ALG+GG+PKGRIV
Sbjct: 4   DRQKALDTVIKNMEKSFGKGAVMKLGDNKA--RKVSSVSSGSVTLDNALGVGGYPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD +YA  LGVD++NL +SQPD G
Sbjct: 62  EIYGPESSGKTTVALHAIAEVQKNGGVAAFIDAEHALDPVYAEALGVDIQNLYLSQPDHG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI +  VRSGAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 122 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S    VFINQ+R K+GVMFG+PE T GG ALKFYSSVRL++RR   +K    I GN+T
Sbjct: 182 SKSNTTAVFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYG+GIS  GELIDLG +  IV+KSGAW+S+ G+R+GQG+
Sbjct: 242 KIKVVKNKVAPPFRVAEVDIMYGKGISKEGELIDLGAEHEIVNKSGAWYSYNGERMGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN K++L+EN  I E I+  LR+  G+
Sbjct: 302 ENVKLYLKENPAIREEIDQKLREKLGI 328


>gi|150011039|gb|ABR57176.1| RecA [Staphylococcus xylosus]
          Length = 349

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/340 (60%), Positives = 262/340 (77%), Gaps = 3/340 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+  +  +++ +GKGA+M+LG   +    +  VSSGS+ LD ALG+GG+PKGRIV
Sbjct: 4   DRQKALDTVIKNMEKSFGKGAVMKLGDNEA--RKVSSVSSGSVTLDNALGVGGYPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ Q+ GG  AF+DAEHALD +YA  LGVD++NL +SQPD G
Sbjct: 62  EIYGPESSGKTTVALHAIAEVQRNGGVAAFIDAEHALDPVYAEALGVDIQNLYLSQPDHG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI +  VRSGAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 122 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S    VFINQ+R K+GVMFG+PE T GG ALKFYSSVRL++RR   +K    I GN+T
Sbjct: 182 SKSNTTAVFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G R+GQG+
Sbjct: 242 KIKVVKNKVAPPFRVAEVDIMYGKGISKEGELIDLGVENEIVDKSGAWYSYNGDRMGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           EN K +L+EN  +   I+  LR+  G+  D  ++EP  N 
Sbjct: 302 ENVKSYLKENPTVKAEIDRKLREKLGIF-DGDVEEPEANN 340


>gi|313884175|ref|ZP_07817941.1| RecA protein [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620622|gb|EFR32045.1| RecA protein [Eremococcus coleocola ACS-139-V-Col8]
          Length = 346

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 195/324 (60%), Positives = 255/324 (78%), Gaps = 2/324 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGAIM+LG +      I  + +GSL LD+ALG+GG+P+GRI+
Sbjct: 5   ERQKALDLALKNIEKNFGKGAIMKLGEKTDT--KISTIPTGSLALDVALGVGGYPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA  LGVD+  LL+SQPDTG
Sbjct: 63  ECYGPESSGKTTVALHAIAEVQKQGGTAAFIDAEHALDPDYAANLGVDVDELLLSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDIIV+DSVAAL PRAEIEGDMG++  G+QARLMSQALRKL+ S+
Sbjct: 123 EQGLEIADALVASGAVDIIVVDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKLSGSV 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I  FINQ+R K+G+MFG+PETT GG ALKFYS++RL++RR  +IK+   + GN+T
Sbjct: 183 NKTKTICFFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAETIKNSGEMIGNRT 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PFK+   DIMYG+GIS  GEL+D+     I++K+G+W+S+  +R+GQGR
Sbjct: 243 RIKVVKNKVAPPFKEAMVDIMYGQGISQEGELVDMAADLDIINKAGSWYSYGDERIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQN 334
           EN+K FL +N  + E I S +R +
Sbjct: 303 ENAKQFLIDNPAVREEINSKVRAH 326


>gi|61097703|emb|CAI38696.1| recombinase A [Chromobacterium violaceum]
 gi|61097713|emb|CAI38701.1| recombinase A [Chromobacterium violaceum]
          Length = 285

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 191/286 (66%), Positives = 247/286 (86%), Gaps = 1/286 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++ S   I E ++V+S+GSL LD+ALG+GG P+GR+VEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRM-SDNQITENLQVISTGSLTLDLALGVGGLPRGRVVEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  +A++QK GGTCA++DAE+ALD +YA+KLGV++++LLISQPDTGEQALEI DMLV
Sbjct: 60  TLCLQAVAEAQKLGGTCAYIDAENALDPVYAQKLGVNVEDLLISQPDTGEQALEICDMLV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RS  VD+IV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT +I R+  +++FIN
Sbjct: 120 RSSGVDVIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRTNTLVIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G IK  + + GN TRVKVVKNK++ 
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGGIKKGEELIGNDTRVKVVKNKVSP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           PF+Q +F+I+YGEGIS  GE+I+LGVK   +DKSGAW+++ GQ++G
Sbjct: 240 PFRQADFEILYGEGISRQGEIIELGVKHGFIDKSGAWYAYNGQKIG 285


>gi|313677460|ref|YP_004055456.1| reca protein [Marivirga tractuosa DSM 4126]
 gi|312944158|gb|ADR23348.1| recA protein [Marivirga tractuosa DSM 4126]
          Length = 343

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/323 (62%), Positives = 264/323 (81%), Gaps = 3/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+  + ++ + YGKG++M+L  +  +   +  + +GSLGLDIALGIGG P+GR++
Sbjct: 6   EKLKALQLTIDKLDKTYGKGSVMKLSDEKVV--DVPSIHTGSLGLDIALGIGGIPRGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTLA+H IA++QK GG  A +DAEHA D  YA KLG+D +NLLISQPD+G
Sbjct: 64  EVYGPESSGKTTLAMHCIAEAQKAGGMAAIIDAEHAFDKAYAEKLGIDTENLLISQPDSG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L+RSGA+DI+VIDSVAAL P+ E+EG+MG+S  G+QARLMSQALRKLT +I
Sbjct: 124 EQALEIAEHLIRSGALDIVVIDSVAALVPKGELEGEMGDSKMGLQARLMSQALRKLTGAI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSITGNQ 249
           S++ C  +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+  D+ITGN+
Sbjct: 184 SKTGCSCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGPDNITGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNKMA PFK VEFDIMYGEGIS  GE+IDLGV+  ++ K+G+WFS+   +LGQG
Sbjct: 244 VKVKVVKNKMAPPFKVVEFDIMYGEGISKVGEIIDLGVELEVIKKAGSWFSYMDNKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLR 332
           R++ K  + +N E+ E +E+ +R
Sbjct: 304 RDSVKSLILDNPELMEELETKIR 326


>gi|218130550|ref|ZP_03459354.1| hypothetical protein BACEGG_02139 [Bacteroides eggerthii DSM 20697]
 gi|217986894|gb|EEC53225.1| hypothetical protein BACEGG_02139 [Bacteroides eggerthii DSM 20697]
          Length = 345

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/325 (62%), Positives = 267/325 (82%), Gaps = 2/325 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K KAL+AA+ +I++ +GKG+IM++G +    E +EV+ +GS+GL++ALG+GG+P+
Sbjct: 15  MAASEKLKALQAAMDKIEKSFGKGSIMKMGDES--VEQVEVIPTGSIGLNVALGVGGYPR 72

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NLLISQ
Sbjct: 73  GRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLLISQ 132

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI + L+RS A+DIIV+DSVAALTP+AEIEGDMG++  G+QARLMSQALRKL
Sbjct: 133 PDNGEQALEIAEQLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKL 192

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++S+++   +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR   +IK+ + + 
Sbjct: 193 TSAVSKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGGQAIKNGEEVI 252

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G QT+VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG +  IV KSG+WFS+   ++
Sbjct: 253 GKQTKVKVVKNKVAPPFRRAEFDIMFGEGISRAGEIIDLGAELGIVKKSGSWFSYNDTKI 312

Query: 307 GQGRENSKIFLRENIEIAENIESLL 331
            QGR+ +K  + +N E+AE +E L+
Sbjct: 313 AQGRDAAKQVILDNPELAEELEGLI 337


>gi|330997705|ref|ZP_08321550.1| RecA protein [Paraprevotella xylaniphila YIT 11841]
 gi|329570233|gb|EGG51973.1| RecA protein [Paraprevotella xylaniphila YIT 11841]
          Length = 360

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/322 (62%), Positives = 262/322 (81%), Gaps = 2/322 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL+AA+ +I++ +GKG+IM+LG      E ++V+ +GS+ L+ ALG+GG+P+GRI
Sbjct: 30  TEKLKALQAAMDKIEKNFGKGSIMKLGDDH--VEQVDVIPTGSIALNAALGVGGYPRGRI 87

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD 
Sbjct: 88  IEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDN 147

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D L+RS A+DIIVIDSVAALTP+AEIEGDMG++  G+QARLMSQALRKLTS+
Sbjct: 148 GEQALEIADQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTST 207

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I+++    +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRRV SIKD D + GNQ
Sbjct: 208 INKTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRVTSIKDGDEVIGNQ 267

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            RVKVVKNK+A PF++ EF+I +GEGIS  GE++DLG +  I+ KSG+W+S+   ++GQG
Sbjct: 268 VRVKVVKNKVAPPFRKAEFEITFGEGISKIGEIVDLGTELGILKKSGSWYSYNDTKIGQG 327

Query: 310 RENSKIFLRENIEIAENIESLL 331
           R+  K  L++N E+ + +E L+
Sbjct: 328 RDAVKKMLKDNPELCDEVEGLI 349


>gi|314933464|ref|ZP_07840829.1| protein RecA [Staphylococcus caprae C87]
 gi|313653614|gb|EFS17371.1| protein RecA [Staphylococcus caprae C87]
          Length = 350

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/327 (61%), Positives = 258/327 (78%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+  +  +++ +GKGA+M+LG        +   SSGS+ +D ALG+GG+PKGRI+
Sbjct: 4   ERQKALDTVIKNMEKSFGKGAVMKLGDNKG--RKVSSTSSGSVTVDNALGVGGYPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD +YA+ LGVD+ NL +SQPD G
Sbjct: 62  EIYGPESSGKTTVALHAIAEVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI +  VRSGAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 122 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S    +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T
Sbjct: 182 SKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+ VE DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G R+GQG+
Sbjct: 242 KIKVVKNKVAPPFRVVEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN K +L+EN +I E I+  LR+  G+
Sbjct: 302 ENVKTYLKENPQIKEEIDRKLREKLGI 328


>gi|160892128|ref|ZP_02073131.1| hypothetical protein BACUNI_04591 [Bacteroides uniformis ATCC 8492]
 gi|270296251|ref|ZP_06202451.1| RecA protein [Bacteroides sp. D20]
 gi|317480871|ref|ZP_07939952.1| recA bacterial DNA recombination protein [Bacteroides sp. 4_1_36]
 gi|156858606|gb|EDO52037.1| hypothetical protein BACUNI_04591 [Bacteroides uniformis ATCC 8492]
 gi|270273655|gb|EFA19517.1| RecA protein [Bacteroides sp. D20]
 gi|316902956|gb|EFV24829.1| recA bacterial DNA recombination protein [Bacteroides sp. 4_1_36]
          Length = 345

 Score =  412 bits (1058), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/321 (62%), Positives = 266/321 (82%), Gaps = 2/321 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AA+ +I++ +GKG+IM++G +    E +EV+ +GS+GL++ALG+GG+P+GRI+
Sbjct: 19  EKLKALQAAMDKIEKSFGKGSIMKMGDES--VEQVEVIPTGSIGLNVALGVGGYPRGRII 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NLLISQPD G
Sbjct: 77  EIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLLISQPDNG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L+RS A+DIIV+DSVAALTP+AEIEGDMG++  G+QARLMSQALRKLT+++
Sbjct: 137 EQALEIAEQLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTAAV 196

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+++   +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR   +IK+ D + G QT
Sbjct: 197 SKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQAIKNGDEVIGKQT 256

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG +  I+ KSG+WFS+   ++ QGR
Sbjct: 257 KVKVVKNKVAPPFRRAEFDIMFGEGISRAGEIIDLGAELGIIKKSGSWFSYNETKIAQGR 316

Query: 311 ENSKIFLRENIEIAENIESLL 331
           + +K  + +N E+AE +E L+
Sbjct: 317 DAAKQVILDNPELAEELEGLI 337


>gi|254375250|ref|ZP_04990730.1| recombinase A [Francisella novicida GA99-3548]
 gi|151572968|gb|EDN38622.1| recombinase A [Francisella novicida GA99-3548]
          Length = 360

 Score =  412 bits (1058), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/318 (65%), Positives = 264/318 (83%), Gaps = 2/318 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KALE+ALSQI++ +GKGAIM+LG Q +  + I+V+ SG + LD+ALGIGG+PKGRI+E
Sbjct: 3   KEKALESALSQIEKQFGKGAIMRLGDQEAAHD-IDVIPSGIIALDVALGIGGYPKGRIIE 61

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYG ESSGKTTL L  IAQ QK GGT AFVDAEHALD  YA+ LGVD+ NL++SQPDTGE
Sbjct: 62  IYGHESSGKTTLTLLAIAQCQKQGGTAAFVDAEHALDPKYAKLLGVDVDNLIVSQPDTGE 121

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DMLVRSG VDI+VIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT++I 
Sbjct: 122 QALEIADMLVRSGGVDIVVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIK 181

Query: 192 RSKCILVFINQMRMKIGVMFGSPET-TTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           RS  +++FINQ+RMKIGVMFG+    +TGGN LK YS +RL++++ GSIKD   ++GN+ 
Sbjct: 182 RSNTLVIFINQIRMKIGVMFGNNRNYSTGGNTLKVYSPIRLEVKKGGSIKDGIDVSGNEI 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PFKQ +F+++YGEGIS   ELIDLG K +I++KSGAW+S+KG+++GQG+
Sbjct: 242 KVKVVKNKVAPPFKQADFELIYGEGISLEAELIDLGAKYNIIEKSGAWYSYKGKKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIE 328
           E SK +L+EN    + IE
Sbjct: 302 EKSKEYLKENTAERDEIE 319


>gi|329115829|ref|ZP_08244546.1| RecA protein [Streptococcus parauberis NCFD 2020]
 gi|326906234|gb|EGE53148.1| RecA protein [Streptococcus parauberis NCFD 2020]
          Length = 379

 Score =  412 bits (1058), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/339 (58%), Positives = 263/339 (77%), Gaps = 6/339 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  DRRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAASLGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++VIDSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KDS  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKDSSI 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK  E +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKIAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           GQG EN+K FL ++ EI + I+  +R   GL+AD   +E
Sbjct: 316 GQGSENAKKFLADHPEIFDEIDHKVRVQVGLIADDQAEE 354


>gi|319901570|ref|YP_004161298.1| RecA protein [Bacteroides helcogenes P 36-108]
 gi|319416601|gb|ADV43712.1| RecA protein [Bacteroides helcogenes P 36-108]
          Length = 345

 Score =  412 bits (1058), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/321 (62%), Positives = 265/321 (82%), Gaps = 2/321 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AA+ +I++ +GKG+IM++G +    E IEV+ +GS+GL++ALG+GG+P+GRI+
Sbjct: 19  EKLKALQAAMDKIEKSFGKGSIMKMGDEN--IEQIEVIPTGSIGLNVALGVGGYPRGRII 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NLLISQPD G
Sbjct: 77  EIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYASKLGVDVDNLLISQPDNG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L+RS A+DIIV+DSVAALTP+AEIEGDMG++  G+QARLMSQALRKLTS++
Sbjct: 137 EQALEIAEQLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTSAV 196

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+++   VFINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR   +IK+ + + G QT
Sbjct: 197 SKTRTTCVFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGGQAIKNGEEVIGKQT 256

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG    I+ KSG+WFS+   ++ QGR
Sbjct: 257 KVKVVKNKVAPPFRRAEFDIMFGEGISRAGEIIDLGADLGIIKKSGSWFSYNDTKIAQGR 316

Query: 311 ENSKIFLRENIEIAENIESLL 331
           + +K  + +N E+AE +E L+
Sbjct: 317 DAAKQVILDNPELAEELEGLI 337


>gi|47571294|gb|AAT35804.1| RecA [Mycobacterium terrae]
          Length = 304

 Score =  412 bits (1058), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 194/301 (64%), Positives = 247/301 (82%), Gaps = 2/301 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 6   DREKALELAMAQIDKNFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA++LGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQADGGIAAFIDAEHALDPEYAKRLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADTLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD     GN+T
Sbjct: 184 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG GIS  G LID+GV    + KSG+WF++ G++LGQG+
Sbjct: 244 RVKVVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGSWFTYDGEQLGQGK 303

Query: 311 E 311
           E
Sbjct: 304 E 304


>gi|317474149|ref|ZP_07933426.1| recA bacterial DNA recombination protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|316909720|gb|EFV31397.1| recA bacterial DNA recombination protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 331

 Score =  412 bits (1058), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/325 (62%), Positives = 267/325 (82%), Gaps = 2/325 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K KAL+AA+ +I++ +GKG+IM++G +    E +EV+ +GS+GL++ALG+GG+P+
Sbjct: 1   MAASEKLKALQAAMDKIEKSFGKGSIMKMGDES--VEQVEVIPTGSIGLNVALGVGGYPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NLLISQ
Sbjct: 59  GRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLLISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI + L+RS A+DIIV+DSVAALTP+AEIEGDMG++  G+QARLMSQALRKL
Sbjct: 119 PDNGEQALEIAEQLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++S+++   +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR   +IK+ + + 
Sbjct: 179 TSAVSKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGGQAIKNGEEVI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G QT+VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG +  IV KSG+WFS+   ++
Sbjct: 239 GKQTKVKVVKNKVAPPFRRAEFDIMFGEGISRAGEIIDLGAELGIVKKSGSWFSYNDTKI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLL 331
            QGR+ +K  + +N E+AE +E L+
Sbjct: 299 AQGRDAAKQVILDNPELAEELEGLI 323


>gi|45176|emb|CAA46057.1| reca peptidase [Neisseria meningitidis]
          Length = 274

 Score =  412 bits (1058), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/276 (71%), Positives = 235/276 (85%), Gaps = 3/276 (1%)

Query: 31  AIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           AIM++ GSQ    E +EV+S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKTTL L  +A
Sbjct: 1   AIMKMDGSQQE--ENLEVISTGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           Q QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDTGEQALEI D LVRSG VD++
Sbjct: 59  QCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGVDMV 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  I ++  ++VFINQ+RMKIGV
Sbjct: 119 VVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFGSPETTTGGNALKFYSSVRLDIRR GSIK  + + GN+TRVKV+KNK+A PF+Q EFD
Sbjct: 179 MFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNETRVKVIKNKVAPPFRQAEFD 238

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           I+YGEGIS+ GELID+GVK  I++KSGAW+S+ G +
Sbjct: 239 ILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAK 274


>gi|157273316|gb|ABV27215.1| protein RecA [Candidatus Chloracidobacterium thermophilum]
          Length = 351

 Score =  411 bits (1057), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/332 (59%), Positives = 259/332 (78%), Gaps = 8/332 (2%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           D R+E N     KA++AA++ +++ +GKG +M+LG + ++   +  +S+  L LD A+GI
Sbjct: 3   DTRQERN-----KAIDAAIASLEKQFGKGVVMRLGERQAL--EVPAISTTCLSLDAAIGI 55

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GRIVEIYGPES GKTTLALH  A++Q+TGG  AF+DAEHALD  YA KLGVD+ N
Sbjct: 56  GGVPRGRIVEIYGPESGGKTTLALHVAAEAQRTGGNVAFIDAEHALDPGYAAKLGVDIDN 115

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L +SQPD GEQALEI + LVRS A D++V+DSVAAL P+AE++GDMG++LPG+QARLMSQ
Sbjct: 116 LFVSQPDNGEQALEIAEALVRSAAFDLVVVDSVAALVPKAELDGDMGDALPGLQARLMSQ 175

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT+  +R+   L+FINQ+R KIGV +GSPETTTGG ALKFY+SVR+DIRR  SIKD
Sbjct: 176 ALRKLTAVANRTNTCLIFINQIREKIGVTWGSPETTTGGRALKFYASVRIDIRRTASIKD 235

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            + + G++T+ K+ KNK+A PFK+VEFDI+YG+GI   G+L+DLGV   +++KSG WFS 
Sbjct: 236 GEEVIGSRTKAKIAKNKLAPPFKEVEFDIIYGKGICREGDLLDLGVAHKLIEKSGTWFSL 295

Query: 302 K-GQRLGQGRENSKIFLRENIEIAENIESLLR 332
           K G+RLGQGREN+K  L  N  + E +E  LR
Sbjct: 296 KSGERLGQGRENAKQALAANPALREQLERELR 327


>gi|291278471|ref|YP_003495306.1| DNA recombination protein RecA [Deferribacter desulfuricans SSM1]
 gi|290753173|dbj|BAI79550.1| DNA recombination protein RecA [Deferribacter desulfuricans SSM1]
          Length = 338

 Score =  411 bits (1057), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/330 (62%), Positives = 267/330 (80%), Gaps = 2/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALE A+S+I+R +GKGA+M+LG +    E   V+ +G+L LDIALG+GG P+GRI 
Sbjct: 4   NKKKALELAMSKIERDFGKGAVMRLGDKA--IEKPPVIPTGALSLDIALGVGGIPRGRIT 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYG ESSGKTT+ALH IA++QK GG  AF+DAEHALD +YA  +GV+   LLISQPD+G
Sbjct: 62  EIYGSESSGKTTVALHVIAEAQKMGGVAAFIDAEHALDPVYAEAIGVNTDELLISQPDSG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI + LVRSGAVD++V+DSVAALTP+AEIEGDMG++  G+QARLMSQALRKLT+ +
Sbjct: 122 EAALEIAETLVRSGAVDVVVVDSVAALTPKAEIEGDMGDAHMGLQARLMSQALRKLTAIV 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK  L+FINQ R KIGVMFG+PETTTGGNALKFY+++R++IRR  S+KDKD + GNQ 
Sbjct: 182 NKSKTALIFINQTRQKIGVMFGNPETTTGGNALKFYATIRIEIRRTSSLKDKDQVVGNQV 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
             KVVKNK+A PFKQ EFDI++GEGIS  G LID+G+K  +++K+GAWFS+   RLGQG+
Sbjct: 242 ICKVVKNKVAPPFKQAEFDILFGEGISKEGVLIDMGIKEGLINKAGAWFSYGDIRLGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           EN++ +L+E+ EIA+ IE  +R   GL  +
Sbjct: 302 ENARSYLKEHPEIAQEIEEKIRSKYGLAEN 331


>gi|167762576|ref|ZP_02434703.1| hypothetical protein BACSTE_00932 [Bacteroides stercoris ATCC
           43183]
 gi|167699682|gb|EDS16261.1| hypothetical protein BACSTE_00932 [Bacteroides stercoris ATCC
           43183]
          Length = 345

 Score =  411 bits (1057), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/321 (62%), Positives = 266/321 (82%), Gaps = 2/321 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AA+ +I++ +GKG+IM++G +    E +EV+ +GS+GL++ALG+GG+P+GRI+
Sbjct: 19  EKLKALQAAMDKIEKSFGKGSIMKMGDES--VEQVEVIPTGSIGLNVALGVGGYPRGRII 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NLLISQPD G
Sbjct: 77  EIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLLISQPDNG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L+RS A+DIIV+DSVAALTP+AEIEGDMG++  G+QARLMSQALRKLTS++
Sbjct: 137 EQALEIAEQLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTSAV 196

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+++   +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR   +IK+ + + G QT
Sbjct: 197 SKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGGQAIKNGEEVIGKQT 256

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG +  I+ KSG+WFS+   ++ QGR
Sbjct: 257 KVKVVKNKVAPPFRRAEFDIMFGEGISRAGEIIDLGAELGIIKKSGSWFSYNDTKIAQGR 316

Query: 311 ENSKIFLRENIEIAENIESLL 331
           + +K  + +N E+AE +E L+
Sbjct: 317 DAAKQVILDNPELAEELEGLI 337


>gi|255534404|ref|YP_003094775.1| RecA protein [Flavobacteriaceae bacterium 3519-10]
 gi|255340600|gb|ACU06713.1| RecA protein [Flavobacteriaceae bacterium 3519-10]
          Length = 333

 Score =  411 bits (1057), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 199/324 (61%), Positives = 263/324 (81%), Gaps = 2/324 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL   L ++ + YGKG +M LG   S+ + IEV+ SGSLGLD+ALG+GG+P+GR++
Sbjct: 6   DKKKALALVLDKLDKTYGKGTVMTLG-DASVDDSIEVIPSGSLGLDLALGVGGYPRGRVI 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA++QK GG  AF+DAEHA D  YA KLG++L +L+ISQPD G
Sbjct: 65  EIYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAEHAFDRHYASKLGINLDDLIISQPDNG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L+RSGA+DI+VIDSVAALTP+AEIEG+MG+S  G+ ARLMSQALRKLT +I
Sbjct: 125 EQALEIADNLIRSGAIDIVVIDSVAALTPKAEIEGEMGDSKMGLHARLMSQALRKLTGTI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS-IKDKDSITGNQ 249
           S++KC ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVR+DIR+  + IK  D   G++
Sbjct: 185 SKTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRIDIRKASAPIKTGDEAVGSR 244

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VK+VKNK+A PFK  EFDIMYGEG+S  GE++D+ V+  +V KSG+WFS++  +LGQG
Sbjct: 245 VKVKIVKNKVAPPFKMAEFDIMYGEGVSKVGEILDMAVETGVVKKSGSWFSYEETKLGQG 304

Query: 310 RENSKIFLRENIEIAENIESLLRQ 333
           R+  +  L++N E++E +E+ +++
Sbjct: 305 RDAVRDMLKDNPELSEELEAKIKE 328


>gi|17026060|dbj|BAB72097.1| recA [Campylobacter lari]
 gi|17907836|dbj|BAB79454.1| recA [Campylobacter lari]
          Length = 344

 Score =  411 bits (1057), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/349 (59%), Positives = 272/349 (77%), Gaps = 9/349 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+AAL  + + +GKG I++LG +    E I+ + +GS+GLD+ALGIGG PKGRI+
Sbjct: 4   NKRKSLDAALKSLDKTFGKGTILRLGDKE--VEKIDSIPTGSVGLDLALGIGGVPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD  YA+ LGVD +NL ISQPD G
Sbjct: 62  EIYGPESSGKTTLTLHIIAECQKKGGVCAFIDAEHALDVRYAKNLGVDTENLYISQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSGA+D+IV+DSVAALTP+AEIEGDMG+   G+QARLMSQALR+LT  +
Sbjct: 122 EQALEIVETIARSGAIDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRELTGIV 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RM+IG+M +G+PETTTGGNALKFY+SVRLD+R+  ++K  D   GN+
Sbjct: 182 HKMNTTVIFINQIRMRIGMMGYGTPETTTGGNALKFYASVRLDVRKTATLKQNDEPIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKV KNK+A PFKQ EFD+M+GEG+S  GELID GVK  I+DKSGAWFS+K  +LGQG
Sbjct: 242 VKVKVAKNKVAPPFKQAEFDVMFGEGVSREGELIDYGVKLDIIDKSGAWFSYKASKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           REN+K FL+EN  IA+ I   ++ + G+  DS++    +  K+D + D+
Sbjct: 302 RENAKAFLKENPAIADEITQAIQNSIGI--DSMI----LGAKEDDEGDE 344


>gi|319892304|ref|YP_004149179.1| RecA protein [Staphylococcus pseudintermedius HKU10-03]
 gi|317162000|gb|ADV05543.1| RecA protein [Staphylococcus pseudintermedius HKU10-03]
 gi|323464599|gb|ADX76752.1| protein RecA [Staphylococcus pseudintermedius ED99]
          Length = 347

 Score =  411 bits (1057), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/327 (60%), Positives = 254/327 (77%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+  +  +++ +GKGA+M+LG             S +L  D ALG+GG+PKGRI+
Sbjct: 4   ERQKALDTVIKNMEKSFGKGAVMKLGENKDRRVSSVSSGSVTL--DHALGVGGYPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD +YA  LGVD+ NL +SQPD G
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKNGGVAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI +  VRSGAVDII++DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+++I
Sbjct: 122 EQGLEIAEAFVRSGAVDIIIVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSAAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+SK   +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T
Sbjct: 182 SKSKTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G+R+GQG+
Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGKGISREGELIDLGVQYDIVDKSGAWYSYNGERMGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN K FL EN ++ + I+  LR+  G+
Sbjct: 302 ENVKQFLLENPKLEDEIDRKLREKLGI 328


>gi|47600755|emb|CAF21787.1| recombinase A [Lactobacillus paraplantarum]
          Length = 378

 Score =  411 bits (1057), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 198/343 (57%), Positives = 261/343 (76%), Gaps = 4/343 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL +I++ +GKGAIM++G        I  +SSGSL LD ALG+GG+P+GRIVE
Sbjct: 5   RKAALDTALKKIEKNFGKGAIMRMGDAAQTT--ISTISSGSLALDDALGVGGYPRGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD IYA  LGV++ +LL+SQPDTGE
Sbjct: 63  IYGPESSGKTTVALHAVAEVQKQGGTAAYIDAENALDPIYAEHLGVNIDDLLLSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q LEI D LV SGAVDI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +++
Sbjct: 123 QGLEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTLN 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++K I +FINQ+R K+GVMFG+PETT GG ALKFY+++RL++RR   IK+  +I GN+ R
Sbjct: 183 KTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATIRLEVRRAEQIKEGTNIIGNRVR 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           +KVVKNK+A PFK+ E DIMYG GIS  GE++D+  +  IV KSG+W+S+   R+GQGRE
Sbjct: 243 IKVVKNKVAPPFKRAEVDIMYGHGISQTGEIVDMAAEKDIVKKSGSWYSYGDDRIGQGRE 302

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           N+K +L E+ +I   I   +R   G+  D    E A  T D A
Sbjct: 303 NAKKYLDEHPDIMTEIRQKVRDAYGM--DQTGDEEATETNDQA 343


>gi|260433748|ref|ZP_05787719.1| protein RecA [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417576|gb|EEX10835.1| protein RecA [Silicibacter lacuscaerulensis ITI-1157]
          Length = 298

 Score =  411 bits (1057), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/285 (71%), Positives = 238/285 (83%), Gaps = 10/285 (3%)

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GP+  GKTTL LH IA+ QK GG CAFVDAEHALD  YARKLGVDL  LLISQPDTGEQA
Sbjct: 20  GPKV-GKTTLTLHCIAEQQKRGGVCAFVDAEHALDPQYARKLGVDLDELLISQPDTGEQA 78

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSGAV+++V+DSVAALTP++E+EGDMG+S  G+QARLMSQA+RKLT SI+RS
Sbjct: 79  LEITDTLVRSGAVNMVVVDSVAALTPKSELEGDMGDSSVGVQARLMSQAMRKLTGSIARS 138

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIKD+D + GNQTRVK
Sbjct: 139 NCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIKDRDEVVGNQTRVK 198

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGVKA +V+KSG+WFS+  +R+GQGREN+
Sbjct: 199 VVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVKAGVVEKSGSWFSYGDERIGQGRENA 258

Query: 314 KIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           K +LR++  IA  IE  +R   GL  D     PA      AD+DD
Sbjct: 259 KQYLRDHNRIALEIEDKIRAAHGLEFD---MPPA------ADEDD 294


>gi|269116003|gb|ACZ26521.1| RecA [Candidatus Erwinia dacicola]
          Length = 279

 Score =  411 bits (1057), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 191/281 (67%), Positives = 238/281 (84%), Gaps = 2/281 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q  G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQHKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKI
Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNSSTLLIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSETRVKVVKNKIAAPFKQAE 238

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           F IMYGEGI+ FGEL+DLGVK  +++K+GAW+S+ G ++GQ
Sbjct: 239 FQIMYGEGINVFGELVDLGVKHKLIEKAGAWYSYNGDKIGQ 279


>gi|224372328|ref|YP_002606700.1| recombinase A [Nautilia profundicola AmH]
 gi|254790439|sp|B9L7U2|RECA_NAUPA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|223589265|gb|ACM93001.1| protein RecA [Nautilia profundicola AmH]
          Length = 350

 Score =  411 bits (1057), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/344 (61%), Positives = 270/344 (78%), Gaps = 5/344 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALE A+ QI + +GKG++++L  +    E I  + +GS GLD+ALGIGG PKGRI 
Sbjct: 4   NKQKALELAMKQIDKQFGKGSLVKLSDKD--IEPIAAIPTGSFGLDLALGIGGIPKGRIT 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLAL  IAQ+QK GG  AF+DAEHALD IYA+ +GVD+ NLL+SQPD G
Sbjct: 62  EIYGPESSGKTTLALSIIAQAQKDGGVAAFIDAEHALDVIYAKHIGVDVDNLLVSQPDYG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L RSGAVDIIVIDSVAALTP+AEIEG+MG++  G+QARLMSQALRKLT++I
Sbjct: 122 EQALEIVETLARSGAVDIIVIDSVAALTPKAEIEGNMGDAQVGVQARLMSQALRKLTAAI 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    +VFINQ+RMKIG+M +GSPETTTGGNALKFYSSVRLD+RR+ ++K  D   GN+
Sbjct: 182 HKMNTTVVFINQIRMKIGMMGYGSPETTTGGNALKFYSSVRLDVRRIATLKQADKEVGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PF+  EFDIM+G+GIS  GEL+D GVK  I+DKSGAWFS+   RLGQG
Sbjct: 242 VKVKVVKNKVAPPFRIAEFDIMFGKGISREGELLDYGVKLDIIDKSGAWFSYGATRLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           +EN+K +L+ + E+A+ IE  ++   G+    +++  AI   +D
Sbjct: 302 KENAKEYLKSHPELAQEIEQKIKDALGVELSHMIE--AIEKDED 343


>gi|198276646|ref|ZP_03209177.1| hypothetical protein BACPLE_02842 [Bacteroides plebeius DSM 17135]
 gi|198270171|gb|EDY94441.1| hypothetical protein BACPLE_02842 [Bacteroides plebeius DSM 17135]
          Length = 349

 Score =  411 bits (1056), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/324 (62%), Positives = 264/324 (81%), Gaps = 2/324 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  +K KAL+AA+ +I++ +GKG+IM++G      + +EV+ +GS+ L+ ALG+GG+PKG
Sbjct: 20  NNSEKLKALQAAMDKIEKSFGKGSIMKMGDDH--VQEVEVIPTGSIALNAALGVGGYPKG 77

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EIYGPESSGKTTLA+H IA++Q+ GG  AF+DAEHA D  YA KLGVD+ NL ISQP
Sbjct: 78  RIIEIYGPESSGKTTLAIHAIAEAQRAGGIAAFIDAEHAFDRFYAAKLGVDIDNLWISQP 137

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++  G+QARLMSQALRKLT
Sbjct: 138 DNGEQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLT 197

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           S+IS++    +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   +KD + + G
Sbjct: 198 SAISKTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRATQLKDGEEVIG 257

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           NQ RVKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG +  I+ KSG+W+S+   +LG
Sbjct: 258 NQVRVKVVKNKVAPPFRKAEFDIMFGEGISRSGEIIDLGAELGIIKKSGSWYSYNDTKLG 317

Query: 308 QGRENSKIFLRENIEIAENIESLL 331
           QGR+ +K  +++N E+A+ +E L+
Sbjct: 318 QGRDAAKQCIQDNPELADELEKLI 341


>gi|237733839|ref|ZP_04564320.1| recombinase A [Mollicutes bacterium D7]
 gi|229383177|gb|EEO33268.1| recombinase A [Coprobacillus sp. D7]
          Length = 345

 Score =  411 bits (1056), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 187/321 (58%), Positives = 261/321 (81%), Gaps = 2/321 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K +AL+ A+ QI++ YGKG++M+LG + ++   ++V+ +GSL LD+ALGIGG+PKGRI+E
Sbjct: 15  KVQALDDAIKQIEKKYGKGSVMKLGDRAAV--SVDVIPTGSLTLDLALGIGGYPKGRIIE 72

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA+ QK GG  AF+DAEHA+D +YA+ LGV++  L++SQPD+GE
Sbjct: 73  IYGPESSGKTTLTLHAIAECQKQGGRAAFIDAEHAIDPVYAQNLGVNIDELILSQPDSGE 132

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q LEI + LVRSGA+D++V+DSVAAL P+ E++G+MG+S  G+QARLMS+ALRK+ + ++
Sbjct: 133 QGLEIAETLVRSGAIDLVVVDSVAALVPQVELDGEMGDSQMGLQARLMSKALRKIAAELN 192

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S+C ++FINQ+R KIG+MFG+PETTTGG ALKFYSSVR++IRR  +IK    I GN+  
Sbjct: 193 KSECTIIFINQLREKIGIMFGNPETTTGGRALKFYSSVRVEIRRSEAIKLGTEIVGNKVN 252

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           +KVVKNK+A PFK  + DI+YG+GIS  GE++DL V+  IV+KSGAW+++KG+++GQGRE
Sbjct: 253 IKVVKNKVAPPFKTTQVDIIYGKGISRDGEVLDLAVEKDIVEKSGAWYAYKGEKIGQGRE 312

Query: 312 NSKIFLRENIEIAENIESLLR 332
           N+K FL  + EI E I   ++
Sbjct: 313 NAKTFLSTHSEIMEEITQAIK 333


>gi|319955955|ref|YP_004167218.1| reca protein [Nitratifractor salsuginis DSM 16511]
 gi|319418359|gb|ADV45469.1| RecA protein [Nitratifractor salsuginis DSM 16511]
          Length = 347

 Score =  411 bits (1056), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/327 (63%), Positives = 262/327 (80%), Gaps = 3/327 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+ A+ QI + +GKG +M+LG +    E I  +S+GSLGLD+ALGIGG P+GRIVE
Sbjct: 7   KQKALDMAIKQIDKTFGKGTLMRLGDKE--IEPIAAISTGSLGLDMALGIGGVPQGRIVE 64

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA +QK G  CAF+DAEHALD +YA+ LGVD+ NLL+SQPD GE
Sbjct: 65  IYGPESSGKTTLALQTIASAQKEGKVCAFIDAEHALDVLYAKNLGVDIDNLLVSQPDFGE 124

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL+I + + RSGAVD++VIDSVAALTP++EIEGDMG++  G+QARLMSQALRKLT  + 
Sbjct: 125 QALDILETIARSGAVDLVVIDSVAALTPKSEIEGDMGDTHVGLQARLMSQALRKLTGILH 184

Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +    ++FINQ+RMKIG M +GSPETTTGGNALKFY+SVR+D+RR+ ++K  +S  GN+ 
Sbjct: 185 KMNTTVIFINQIRMKIGTMGYGSPETTTGGNALKFYASVRIDVRRIATLKQGESQIGNRV 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           + KVVKNK+A PF+Q EFDIM+GEGIS  GELID GVK  I+DKSGAWFS+  Q+LGQG+
Sbjct: 245 KAKVVKNKVAPPFRQAEFDIMFGEGISQEGELIDYGVKLDIIDKSGAWFSYGAQKLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K  L+EN E+   IE  +++  G 
Sbjct: 305 ENAKQTLKENPELRAEIEHKIKEALGF 331


>gi|9911106|sp|P97195|RECA_NEILA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|12644366|sp|P96955|RECA_NEIPO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|7443877|pir||S24742 recombination protein recA - Neisseria meningitidis  (fragment)
 gi|44979|emb|CAA46054.1| reca peptidase [Neisseria gonorrhoeae]
 gi|45016|emb|CAA46061.1| reca peptidase [Neisseria meningitidis]
 gi|45048|emb|CAA46060.1| reca peptidase [Neisseria meningitidis]
 gi|45054|emb|CAA46056.1| reca peptidase [Neisseria meningitidis]
 gi|45060|emb|CAA46059.1| reca peptidase [Neisseria meningitidis]
 gi|45104|emb|CAA46062.1| reca peptidase [Neisseria meningitidis]
 gi|45162|emb|CAA46058.1| reca peptidase [Neisseria meningitidis]
 gi|45247|emb|CAA46055.1| reca peptidase [Neisseria meningitidis]
 gi|1354915|gb|AAB49193.1| RecA [Neisseria gonorrhoeae]
 gi|1354917|gb|AAB49194.1| RecA [Neisseria lactamica]
 gi|1354921|gb|AAB49196.1| RecA [Neisseria meningitidis]
 gi|1354925|gb|AAB49198.1| RecA [Neisseria polysaccharea]
          Length = 274

 Score =  411 bits (1056), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 195/276 (70%), Positives = 235/276 (85%), Gaps = 3/276 (1%)

Query: 31  AIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           AIM++ GSQ    E +EV+S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKTTL L  +A
Sbjct: 1   AIMKMDGSQQE--ENLEVISTGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           Q QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDTGEQALEI D LVRSG +D++
Sbjct: 59  QCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGIDMV 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  I ++  ++VFINQ+RMKIGV
Sbjct: 119 VVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFGSPETTTGGNALKFYSSVRLDIRR GSIK  + + GN+TRVKV+KNK+A PF+Q EFD
Sbjct: 179 MFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNETRVKVIKNKVAPPFRQAEFD 238

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           I+YGEGIS+ GELID+GVK  I++KSGAW+S+ G +
Sbjct: 239 ILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAK 274


>gi|167754522|ref|ZP_02426649.1| hypothetical protein CLORAM_00023 [Clostridium ramosum DSM 1402]
 gi|167705354|gb|EDS19933.1| hypothetical protein CLORAM_00023 [Clostridium ramosum DSM 1402]
          Length = 348

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 187/321 (58%), Positives = 261/321 (81%), Gaps = 2/321 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K +AL+ A+ QI++ YGKG++M+LG + ++   ++V+ +GSL LD+ALGIGG+PKGRI+E
Sbjct: 18  KVQALDDAIKQIEKKYGKGSVMKLGDRAAV--SVDVIPTGSLTLDLALGIGGYPKGRIIE 75

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA+ QK GG  AF+DAEHA+D +YA+ LGV++  L++SQPD+GE
Sbjct: 76  IYGPESSGKTTLTLHAIAECQKQGGRAAFIDAEHAIDPVYAQNLGVNIDELILSQPDSGE 135

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q LEI + LVRSGA+D++V+DSVAAL P+ E++G+MG+S  G+QARLMS+ALRK+ + ++
Sbjct: 136 QGLEIAETLVRSGAIDLVVVDSVAALVPQVELDGEMGDSQMGLQARLMSKALRKIAAELN 195

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S+C ++FINQ+R KIG+MFG+PETTTGG ALKFYSSVR++IRR  +IK    I GN+  
Sbjct: 196 KSECTIIFINQLREKIGIMFGNPETTTGGRALKFYSSVRVEIRRSEAIKLGTEIVGNKVN 255

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           +KVVKNK+A PFK  + DI+YG+GIS  GE++DL V+  IV+KSGAW+++KG+++GQGRE
Sbjct: 256 IKVVKNKVAPPFKTTQVDIIYGKGISRDGEVLDLAVEKDIVEKSGAWYAYKGEKIGQGRE 315

Query: 312 NSKIFLRENIEIAENIESLLR 332
           N+K FL  + EI E I   ++
Sbjct: 316 NAKTFLSTHSEIMEEITQAIK 336


>gi|224542090|ref|ZP_03682629.1| hypothetical protein CATMIT_01265 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525023|gb|EEF94128.1| hypothetical protein CATMIT_01265 [Catenibacterium mitsuokai DSM
           15897]
          Length = 344

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/332 (57%), Positives = 263/332 (79%), Gaps = 2/332 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   K+  + D   AL+ A+SQI++ +GKG++M+LG + ++   ++V+ SGSL LD ALG
Sbjct: 3   MAKEKKSAVKDTDAALDDAISQIEKKFGKGSVMRLGDRTAV--DVDVIPSGSLTLDKALG 60

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG+PKGRI+EIYGPESSGKTTL LH IAQ+QK GG  AF+DAEHA+D +YA+ LGVD+ 
Sbjct: 61  IGGYPKGRIIEIYGPESSGKTTLTLHAIAQAQKQGGKAAFIDAEHAIDPVYAKNLGVDID 120

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            L++SQPD+GEQALEI +MLVRSG +D+IVIDSVAAL P+ E++G+MG++  G+QARLMS
Sbjct: 121 ELILSQPDSGEQALEIAEMLVRSGVIDLIVIDSVAALVPQVELDGEMGDAAVGLQARLMS 180

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           +ALRKL+  ++++ C ++FINQ+R KIGVM+G+PETTTGG ALKFYSSVR++IRR   IK
Sbjct: 181 KALRKLSGVMNKTNCTVIFINQLREKIGVMYGNPETTTGGRALKFYSSVRVEIRRSEQIK 240

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
               I GN+  +KVVKNK+A PFK  + DI+YG+GIS  GE++DL V+  IV+KSGAW++
Sbjct: 241 QNGEIVGNKANIKVVKNKVAPPFKTTQVDIIYGKGISRDGEILDLAVEGDIVEKSGAWYA 300

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           + G+++GQGREN+K FL E+  I   +E  ++
Sbjct: 301 YNGEKIGQGRENAKNFLLEHPAIFAEVEEKVK 332


>gi|290490556|dbj|BAI79265.1| recombinase A [Tomitella biformata]
 gi|290490558|dbj|BAI79266.1| recombinase A [Tomitella biformata]
          Length = 300

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/299 (64%), Positives = 247/299 (82%), Gaps = 2/299 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G++M+LG +    + I V+ +GS+ LD+ALGIGGFP+GR+VEIYGPESSGKTT+ALH +A
Sbjct: 1   GSVMRLGEES--HQPIAVIPTGSIALDVALGIGGFPRGRVVEIYGPESSGKTTVALHAVA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           ++QK GG  AF+DAEHALD  YAR LGVD   LL+SQPDTGEQALEI DML+RSGA+DI+
Sbjct: 59  EAQKAGGIAAFIDAEHALDPEYARNLGVDTDALLVSQPDTGEQALEIADMLIRSGAIDIL 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+  +I+ S    +FINQ+R KIGV
Sbjct: 119 VIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMAGAINNSGTTAIFINQLREKIGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+TRVKVVKNK+A PFKQ EFD
Sbjct: 179 MFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAIGNRTRVKVVKNKVAPPFKQAEFD 238

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           I+YG+GIS  G L+D+GV+   V KSG+W++++G +LGQG++N++ +L E+I++ + IE
Sbjct: 239 ILYGQGISKEGSLVDMGVEQGFVRKSGSWYTYEGDQLGQGKDNARKYLLEHIDVRDEIE 297


>gi|269116001|gb|ACZ26520.1| RecA [Candidatus Erwinia dacicola]
          Length = 279

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 190/281 (67%), Positives = 238/281 (84%), Gaps = 2/281 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           +A +Q  G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 59  VAAAQHKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKI
Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNSSTLLIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSETRVKVVKNKIAAPFKQAE 238

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           F IMYGEGI+ FGEL+DLGVK  +++K+GAW+S+ G ++GQ
Sbjct: 239 FQIMYGEGINVFGELVDLGVKHKLIEKAGAWYSYNGDKIGQ 279


>gi|437276|gb|AAA17793.1| RecA [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 343

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/328 (62%), Positives = 262/328 (79%), Gaps = 3/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+AAL  + + +GKG I++LG +    E I+ + +GS+GLD+ALGIGG PKGRI+
Sbjct: 4   NKRKSLDAALKSLDKTFGKGTILRLGDKE--VEQIDSIGTGSVGLDLALGIGGVPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD  YA+ LGV+  +L +SQPD G
Sbjct: 62  EIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLGVNTDDLYVSQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSGAVD+IV+DSVAALTP+AEIEGDMG+   G+QARLMSQALRKLT  +
Sbjct: 122 EQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRKLTGIV 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIG M +G+PETTTGGNALK Y+SVRLD+R+V ++K  +   GN+
Sbjct: 182 HKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKIYASVRLDVRKVATLKQNEEPIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PF+Q EFD+M+GEG+S  GELID GVK  IVDKSGAWFS+K ++LGQG
Sbjct: 242 VKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           RENSK FL+EN EIA+ I   ++ + G+
Sbjct: 302 RENSKAFLKENPEIADEITKAIQNSMGI 329


>gi|312865796|ref|ZP_07726018.1| RecA protein [Streptococcus downei F0415]
 gi|311098671|gb|EFQ56893.1| RecA protein [Streptococcus downei F0415]
          Length = 382

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/356 (55%), Positives = 269/356 (75%), Gaps = 6/356 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGAIM+LG +    + ++V+SSGSL LDIALG+GG+PKGRI+
Sbjct: 18  ERKKALDDALKTIEKDFGKGAIMKLGERAD--QKVQVMSSGSLALDIALGVGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAVALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+R    IK     KDS  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRGNTQIKGTGDQKDSSI 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK  + +IMYGEGIS  GEL+ +     I+ K+GAW+S+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKVAQVEIMYGEGISRTGELVKIATDLDIIQKAGAWYSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           GQG EN+K +L +N E+ + I+  +R   GL+ D    E      D A+K + + +
Sbjct: 316 GQGSENAKKYLADNPEVFDEIDKKVRIKYGLIEDDKTPEEPATEADSANKSEPEEL 371


>gi|326336627|ref|ZP_08202795.1| recombination protein A [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325691097|gb|EGD33068.1| recombination protein A [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 382

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/311 (63%), Positives = 253/311 (81%), Gaps = 4/311 (1%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           + +GKG +M+LG +  + E +EV+ SGSLGLDIALG+GG+P+GRI+EI+G ESSGKTTL 
Sbjct: 31  KTFGKGTVMRLGDK--VAEKVEVIPSGSLGLDIALGVGGYPRGRIIEIFGQESSGKTTLT 88

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA++QK GG+ AF+DAEHA D  YA+K+G+D+ NL+ISQPD GEQALEI D L+RSG
Sbjct: 89  LHAIAEAQKKGGSAAFIDAEHAFDPGYAKKIGIDIDNLIISQPDNGEQALEIVDNLIRSG 148

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           AVDIIV+DSVAALTP+ EIEGDMGES  G+ ARLMSQALRK+T SISR+ C+++FINQ+R
Sbjct: 149 AVDIIVVDSVAALTPKVEIEGDMGESKMGVHARLMSQALRKITGSISRANCVVMFINQLR 208

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS-IKDKD-SITGNQTRVKVVKNKMASP 262
            KIGV FG+PETTTGGNALKFY+SVR+D+RR  S +K+K+    G+ TRVKVVKNK+A P
Sbjct: 209 EKIGVSFGNPETTTGGNALKFYASVRVDVRRQPSPLKNKEGEAYGSLTRVKVVKNKVAPP 268

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F+  EF+I+YGEGIS  GE+ID G    I+ KSGAW+S+ G RL QGRE  K  L +N E
Sbjct: 269 FQNTEFEIIYGEGISKTGEIIDWGTDYDILSKSGAWYSYGGTRLAQGREAMKTVLLDNPE 328

Query: 323 IAENIESLLRQ 333
           +AE IE+ +++
Sbjct: 329 MAEEIENKIKE 339


>gi|149194199|ref|ZP_01871297.1| recombinase A [Caminibacter mediatlanticus TB-2]
 gi|149136152|gb|EDM24630.1| recombinase A [Caminibacter mediatlanticus TB-2]
          Length = 351

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/350 (60%), Positives = 271/350 (77%), Gaps = 8/350 (2%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KALE AL Q+++ +GKG++++L  +    E I  + +GS GLDIALGIGG PKGRI E
Sbjct: 5   KQKALELALKQVEKQFGKGSLVKLSEKE--IEPIAAIPTGSFGLDIALGIGGIPKGRITE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL  IAQ+QK GG  AF+DAEHA D IYAR +GVD+ NLL+SQPD GE
Sbjct: 63  IYGPESSGKTTLALSIIAQAQKDGGVAAFIDAEHAFDPIYARNIGVDIDNLLVSQPDYGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI + L RSGAVDIIV+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKLT++I 
Sbjct: 123 QALEIVETLARSGAVDIIVVDSVAALTPKAEIEGNMGDAQVGVQARLMSQALRKLTAAIH 182

Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +    +VFINQ+RMKIG+M +GSPETTTGGNALKFYSSVRLD+RR+ ++K  D   GN+ 
Sbjct: 183 KMNTTVVFINQIRMKIGMMGYGSPETTTGGNALKFYSSVRLDVRRIATLKQGDKEVGNRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF+  EFDIM+G+GIS  GE++D GVK  I+DKSGAWFS+   +LGQG+
Sbjct: 243 KVKVVKNKVAPPFRIAEFDIMFGKGISREGEILDFGVKLDIIDKSGAWFSYGATKLGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           EN+K +LR + E+   IE+ +++  G+    +     I T +  D+D+ +
Sbjct: 303 ENAKEYLRSHPELMHEIEAKIKEALGMELSHM-----IETIEKQDEDELN 347


>gi|222871902|gb|EEF09033.1| predicted protein [Populus trichocarpa]
          Length = 281

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/278 (70%), Positives = 244/278 (87%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LDIALG+GG P+GR++EIYGPESSGKTTL L  IA+ QK GGTCAF+DAEHALD+ YA+K
Sbjct: 1   LDIALGVGGLPRGRVIEIYGPESSGKTTLTLQVIAEMQKQGGTCAFIDAEHALDTSYAQK 60

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           LGV+L  +LISQPDTGEQALEI D LVRSGAVD+IV+DSVAALTPRAEIEG+MG+ LPG+
Sbjct: 61  LGVNLNEVLISQPDTGEQALEIVDSLVRSGAVDMIVVDSVAALTPRAEIEGEMGDQLPGL 120

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
           QARLMSQALRKLT++I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIR
Sbjct: 121 QARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIR 180

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK 294
           R G+IK  D   GN+T+VKVVKNK++ PFK  EFDI++GEGIS  GE++D+GV A I+DK
Sbjct: 181 RTGTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEILDMGVNAKILDK 240

Query: 295 SGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           SGAW+++ G+++GQGR+N++ FLREN  +A  IE+ +R
Sbjct: 241 SGAWYAYNGEKIGQGRDNAREFLRENSGLAVEIENKVR 278


>gi|223044523|ref|ZP_03614548.1| protein RecA [Staphylococcus capitis SK14]
 gi|222442098|gb|EEE48218.1| protein RecA [Staphylococcus capitis SK14]
          Length = 350

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/327 (60%), Positives = 257/327 (78%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+  +  +++ +GKGA+M+LG        +   SSGS+ +D ALG+GG+PKGRI+
Sbjct: 4   ERQKALDTVIKNMEKSFGKGAVMKLGDNKG--RKVSSTSSGSVTVDNALGVGGYPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD +YA+ LGVD+ NL +SQPD G
Sbjct: 62  EIYGPESSGKTTVALHAIAEVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI +  VRSGAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 122 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S    +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T
Sbjct: 182 SKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G R+GQG+
Sbjct: 242 KIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN K +L+EN +I E I+  LR+  G+
Sbjct: 302 ENVKTYLKENPQIKEEIDRKLREKLGI 328


>gi|325145689|gb|ADY86114.1| RecA [Burkholderia sp. A-7.3]
          Length = 337

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/327 (62%), Positives = 252/327 (77%), Gaps = 1/327 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKAL A L+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEI
Sbjct: 1   SKALAAXLAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSG++D+IVIDSVAAL P+AEIE                            
Sbjct: 120 ALEITDALVRSGSIDMIVIDSVAALVPKAEIEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 179

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
                   NQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRV
Sbjct: 180 XXXXXXXXNQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N
Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299

Query: 313 SKIFLRENIEIAENIESLLRQNAGLVA 339
           ++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 AREFLRENPEIAREIENRIRESLGVVA 326


>gi|162424779|gb|ABX90067.1| RecA protein [Burkholderia sp. DPU-3]
          Length = 267

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/268 (72%), Positives = 237/268 (88%), Gaps = 1/268 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G++M+LG QG   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A
Sbjct: 1   GSVMRLG-QGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA+KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+I
Sbjct: 60  EMQKLGGTAAFIDAEHALDIQYAQKLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGA 297
           I+YGEGIS  GE+IDLGV+A IVDK+GA
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGA 267


>gi|328954421|ref|YP_004371755.1| Protein recA [Desulfobacca acetoxidans DSM 11109]
 gi|328454745|gb|AEB10574.1| Protein recA [Desulfobacca acetoxidans DSM 11109]
          Length = 349

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/330 (60%), Positives = 272/330 (82%), Gaps = 1/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKSKALE AL+QI++ YG+G+IM+LG+     + I V+ +GSL LD+ALGIGG P+GR+V
Sbjct: 8   DKSKALEQALNQIEKQYGRGSIMRLGADERTAD-IGVIPTGSLSLDLALGIGGIPRGRVV 66

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTLALH IA++QK GG  AF+DAEHALD  YAR+LGV  ++LLISQPDTG
Sbjct: 67  EIFGPESSGKTTLALHIIAEAQKLGGVAAFIDAEHALDLNYARRLGVKTEDLLISQPDTG 126

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI ++LVRS A+D IV+DSVAAL PR+EIEGDMG++  G QARLMSQALRKLT++I
Sbjct: 127 EQALEIAEILVRSNALDAIVVDSVAALVPRSEIEGDMGDAQMGSQARLMSQALRKLTAAI 186

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S+  ++FINQ+RMKIG+++G+PETTTGGNALKFY+S RLDIR+   +KD + I G++T
Sbjct: 187 SKSQTSVIFINQIRMKIGLVYGNPETTTGGNALKFYASQRLDIRKGLPLKDGNEIIGSRT 246

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +V+VVKNK+A+PF++ EFD+++G+GIS  G+L+DL    ++V KSG+W+S+  +R+ QGR
Sbjct: 247 KVRVVKNKLAAPFRECEFDVIFGQGISREGDLLDLAADLNLVQKSGSWYSYGSERMAQGR 306

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           EN+K FLRE+ E+   +++ +R   G+  +
Sbjct: 307 ENAKAFLREHPEVLAELDTQVRAKFGVTKN 336


>gi|328865278|gb|EGG13664.1| recombinase A [Dictyostelium fasciculatum]
          Length = 451

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 189/321 (58%), Positives = 254/321 (79%), Gaps = 1/321 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           S  LEA + +I++ +GKG +M+LGSQ ++ + ++V+ +GSLGLD+ALG+GG PKGRI+EI
Sbjct: 85  SSKLEATMKEIEQTFGKGTLMKLGSQFTLSK-VDVIPTGSLGLDVALGVGGLPKGRIIEI 143

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           +GPESSGKTTLALH IAQ+QK GG C F+DAEHAL+  +A+KLGV+L  L +SQPD+GEQ
Sbjct: 144 FGPESSGKTTLALHVIAQAQKVGGNCTFIDAEHALNPSWAQKLGVNLDELFVSQPDSGEQ 203

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEI D L+RS  + +IV+DSVAAL PR E++G+MG+S  G+ ARLMSQALRKL+ S+  
Sbjct: 204 ALEIVDSLLRSKTMQVIVVDSVAALVPRVELDGEMGDSHVGVHARLMSQALRKLSPSLKE 263

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           S C+L+FINQ+R+KIGVMFG+PETTTGGNALKF+SSVRLDIR+VG++K  D     Q +V
Sbjct: 264 SNCVLIFINQIRIKIGVMFGNPETTTGGNALKFFSSVRLDIRKVGAVKKGDETIATQVKV 323

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KV KNK+A PF++  FDI +  GI+  GE+ID+ +   I++K G+W+S+ G++L QGRE 
Sbjct: 324 KVAKNKLAPPFREAIFDIDFASGINKTGEIIDMALLEGIIEKGGSWYSYNGEQLAQGREK 383

Query: 313 SKIFLRENIEIAENIESLLRQ 333
           +K  L EN  + E IE+ LRQ
Sbjct: 384 TKQHLEENRPLLEEIETKLRQ 404


>gi|193211955|ref|YP_001997908.1| recombinase A [Chlorobaculum parvum NCIB 8327]
 gi|238692669|sp|B3QQT8|RECA_CHLP8 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|193085432|gb|ACF10708.1| recA protein [Chlorobaculum parvum NCIB 8327]
          Length = 347

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/340 (60%), Positives = 267/340 (78%), Gaps = 10/340 (2%)

Query: 9   IVDKS--KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           +VD +  K L  A+  +++ +GKG+IM+LG   ++   ++ +S+GS+ LD ALG+GGFP+
Sbjct: 14  VVDPARLKQLNLAIETLEKQFGKGSIMRLGDDSAVMH-VKAISTGSMALDYALGVGGFPR 72

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+ EIYGPESSGKTTLALH IA++QK GG  A VDAEHA D  YARKLGVD+ +LL+SQ
Sbjct: 73  GRVTEIYGPESSGKTTLALHAIAEAQKEGGIAALVDAEHAFDPTYARKLGVDINSLLVSQ 132

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P++GEQAL I + LVRSGAVDI+V+DSVAAL P+AE+EG+MG+S+ G+QARLMSQALRKL
Sbjct: 133 PESGEQALSIVETLVRSGAVDIVVVDSVAALVPQAELEGEMGDSVVGLQARLMSQALRKL 192

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T +IS+S  + +FINQ+R KIGVM+GSPETTTGG ALKFYSSVRLDIRR+  IKD + + 
Sbjct: 193 TGAISKSSSVCIFINQLRDKIGVMYGSPETTTGGKALKFYSSVRLDIRRIAQIKDGEEVV 252

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+T+VKVVKNK+A PFK  EFDI+YGEGIS  GELIDL V+  I+ K+GAWFS+  ++L
Sbjct: 253 GNRTKVKVVKNKVAPPFKIAEFDILYGEGISVLGELIDLAVEFGIIKKAGAWFSYGSEKL 312

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           GQGREN K  L+E+    E + + +RQ    V D+L   P
Sbjct: 313 GQGRENVKRLLKED----ETVRNTIRQQ---VRDTLTGTP 345


>gi|169350624|ref|ZP_02867562.1| hypothetical protein CLOSPI_01396 [Clostridium spiroforme DSM 1552]
 gi|169292678|gb|EDS74811.1| hypothetical protein CLOSPI_01396 [Clostridium spiroforme DSM 1552]
          Length = 343

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 187/323 (57%), Positives = 263/323 (81%), Gaps = 2/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K +AL+ A+ QI++ YGKG++M+LG + ++   ++V+ +GSL LD+ALGIGG+PKGRI+E
Sbjct: 15  KVQALDDAIKQIEKKYGKGSVMKLGDRVAV--SVDVIPTGSLTLDLALGIGGYPKGRIIE 72

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA+ QK GG  AF+DAEHA+D +YA+ LGV++  L++SQPD+GE
Sbjct: 73  IYGPESSGKTTLTLHAIAECQKQGGRAAFIDAEHAIDPVYAQNLGVNIDELILSQPDSGE 132

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q LEI + LVRSGA+D++V+DSVAAL P+ E++G+MG++  G+QARLMS+ALRK+ + ++
Sbjct: 133 QGLEIAETLVRSGAIDLVVVDSVAALVPQVELDGEMGDAQMGLQARLMSKALRKIAAELN 192

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S+C ++FINQ+R KIGVMFG+PETTTGG ALKFYSSVR++IRR  +IK    I GN+T 
Sbjct: 193 KSECTIIFINQLREKIGVMFGNPETTTGGRALKFYSSVRIEIRRGEAIKQGTEIVGNKTN 252

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           +KVVKNK+A PFK  + DI+YG+GIS  GE++DL V+  IV+KSGAW+++KG+++GQGRE
Sbjct: 253 IKVVKNKVAPPFKTTQVDIIYGKGISRDGEVLDLAVENDIVEKSGAWYAYKGEKIGQGRE 312

Query: 312 NSKIFLRENIEIAENIESLLRQN 334
           N+K +L  + +I E I   + +N
Sbjct: 313 NAKTYLTTHPDIMEEITQTIVKN 335


>gi|229815358|ref|ZP_04445693.1| hypothetical protein COLINT_02403 [Collinsella intestinalis DSM
           13280]
 gi|229809138|gb|EEP44905.1| hypothetical protein COLINT_02403 [Collinsella intestinalis DSM
           13280]
          Length = 366

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 201/349 (57%), Positives = 260/349 (74%), Gaps = 4/349 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ K +E   + I + +G GAIM+ G  G   E +E + +G++ LD ALGIGG P+GRI+
Sbjct: 19  EREKMIEVTKADIIKKFGDGAIMRYGDGGPELE-VEAIPTGAIALDAALGIGGVPRGRII 77

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+L  +A++Q  GG  AF+DAEHALD  YA ++GVD+  +LISQPDTG
Sbjct: 78  EIYGPESSGKTTLSLEIVAEAQAMGGVAAFIDAEHALDPTYAARIGVDIDEVLISQPDTG 137

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D++VIDSVAAL PRAEIEG++GE+  G+QARLMSQALRKL  S+
Sbjct: 138 EQALEICDMLVRSGAIDVVVIDSVAALVPRAEIEGEIGETTVGLQARLMSQALRKLAGSL 197

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++S    +FINQ+R KIGVMFG+PETTTGG ALKF+SSVR+DIRR+ SIK KD I GN+ 
Sbjct: 198 AKSNTTCIFINQLREKIGVMFGNPETTTGGRALKFFSSVRIDIRRIESIKVKDEIVGNRV 257

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R KVVKNK+A+PF+  EFDIMYG GIS  G ++D+ V+ + V K+GAWF++ G+RLGQGR
Sbjct: 258 RAKVVKNKVAAPFRTAEFDIMYGTGISKEGSVLDMAVQFNFVTKAGAWFTYDGERLGQGR 317

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           E +K  LR+  E+   +E  +R   GL       EP     DD + D +
Sbjct: 318 EAAKEKLRKTPELLAELEHKVRVACGL---EFEDEPVGTIVDDVEFDSS 363


>gi|109946946|ref|YP_664174.1| recombinase A [Helicobacter acinonychis str. Sheeba]
 gi|123173557|sp|Q17YV1|RECA_HELAH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|109714167|emb|CAJ99175.1| recA protein [Helicobacter acinonychis str. Sheeba]
          Length = 347

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/327 (62%), Positives = 265/327 (81%), Gaps = 3/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+  A+ QI +V+GKGA+++LG +    E I+ +S+GSLGLD+ALGIGG PKGRI+
Sbjct: 6   DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDSISTGSLGLDLALGIGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  +
Sbjct: 124 EQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+
Sbjct: 184 HKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PF++ EFDIM+GEGIS  GE+ID GVK  IVDKSGAW S++ ++LGQG
Sbjct: 244 AKVKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336
           REN+K  L+E+  +A  I   ++++ G
Sbjct: 304 RENAKALLKEDKALANEIILKIKESIG 330


>gi|325183181|emb|CCA17639.1| protein recA putative [Albugo laibachii Nc14]
          Length = 717

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/355 (57%), Positives = 263/355 (74%), Gaps = 11/355 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKS AL  A+ QI+  +GKG++MQLGS   I E +EV+S+GSL LD ALGIGG P+GRIV
Sbjct: 361 DKSNALAMAIRQIESSFGKGSVMQLGS-AKIAERVEVISTGSLSLDYALGIGGLPRGRIV 419

Query: 71  EIYGPESSGKTTLALHTIAQSQKT-GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           EIYGPESSGKTTLAL  IAQ+QK  G  CAF+DAEHA+D+ YA  LGV+++ L +SQPD+
Sbjct: 420 EIYGPESSGKTTLALSCIAQAQKKDGAVCAFIDAEHAIDAHYANALGVNIEELYVSQPDS 479

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD L+RSGAVD++V+DSVAAL PRAE+EG+MG+    +QARLMSQALRKLT S
Sbjct: 480 GEQALEITDTLIRSGAVDLVVLDSVAALVPRAELEGEMGDQQIALQARLMSQALRKLTGS 539

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +S+S C L+F+NQ+R K+GV+FGSPE T+GG AL++Y+SVRLDIRR   IK  D+I GN+
Sbjct: 540 LSKSNCTLIFLNQIRHKVGVIFGSPEVTSGGTALRYYASVRLDIRRQTQIKQGDAIIGNE 599

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF--KGQRLG 307
           T VKV KNK+ASPFK   FD++YG+GI    EL+DLG    ++++SGAW+S       +G
Sbjct: 600 TVVKVAKNKLASPFKIARFDMIYGKGIDRMSELLDLGTLHGLINRSGAWYSLIENEAPMG 659

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           QGR  +K FL  + +IA+ IE  LR         L +EP +   D    +D+  V
Sbjct: 660 QGRAKAKAFLELHEDIAKKIEQSLR-------GKLFEEPTLTEIDQEAVEDSAEV 707


>gi|169831007|ref|YP_001716989.1| recA protein [Candidatus Desulforudis audaxviator MP104C]
 gi|169637851|gb|ACA59357.1| recA protein [Candidatus Desulforudis audaxviator MP104C]
          Length = 345

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/329 (60%), Positives = 269/329 (81%), Gaps = 3/329 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLG-SQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           ++D+ KALE AL+QI+R +GKGA+M+LG + G +   +EV+ +G+L LD+ALG+GG P+G
Sbjct: 1   MIDRQKALELALAQIERQFGKGAVMKLGEATGKL--SVEVIPTGALALDLALGVGGMPRG 58

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R++EI+GPE+SGKTT+ALH IA++Q+ GGT AF+DAEHALD +YA K+GVD++NLLISQP
Sbjct: 59  RVIEIFGPEASGKTTVALHVIAEAQRMGGTAAFIDAEHALDPVYAGKVGVDIENLLISQP 118

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEIT+ LVRSGAVD++VIDSVAAL PRAE+EG+MG+   G+QARLMSQALRKLT
Sbjct: 119 DTGEQALEITEALVRSGAVDVVVIDSVAALVPRAELEGEMGDIHVGLQARLMSQALRKLT 178

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           + I +S+ + +FINQ+R K+GVMFG+PETT GG ALKFYSS+RL++RR+ ++K      G
Sbjct: 179 AVIGKSRTVAIFINQIREKVGVMFGNPETTPGGRALKFYSSIRLEVRRLEALKQGAETVG 238

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
            + RVKVVKNK+A PFKQ EFD++YGEGIS  G L+D+     +V KSGAW+S+  +RLG
Sbjct: 239 ARVRVKVVKNKVAPPFKQAEFDLLYGEGISLLGSLLDVATDLRVVTKSGAWYSYGQERLG 298

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAG 336
           QGREN++ FL+E+ E+ + I   +++  G
Sbjct: 299 QGRENAREFLKEHPELVDKISQQVKEILG 327


>gi|191637814|ref|YP_001986980.1| Protein recA (Recombinase A) [Lactobacillus casei BL23]
 gi|190712116|emb|CAQ66122.1| Protein recA (Recombinase A) [Lactobacillus casei BL23]
 gi|327381880|gb|AEA53356.1| Protein recA [Lactobacillus casei LC2W]
 gi|327385042|gb|AEA56516.1| Protein recA [Lactobacillus casei BD-II]
          Length = 353

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 193/329 (58%), Positives = 263/329 (79%), Gaps = 2/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL +I++ +GKGAIM++G++      + VVSSGSL +D ALG+GGFP+GRIV
Sbjct: 5   ERQKALDVALKKIEKNFGKGAIMRMGAKADTR--VSVVSSGSLAVDDALGVGGFPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGV++  LL+SQPDTG
Sbjct: 63  EIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGA+DI+VIDSVAAL PRAEIEGDMG++  G+QARLMSQALRKL+ SI
Sbjct: 123 EQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKLSGSI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+G++FGSPETT GG ALKFY++VRL+IRR   IK    + GN+T
Sbjct: 183 NKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVVGNRT 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+    DIMYG+GIS  GEL+D+ V+  IV+K+G+W++++G+R+GQGR
Sbjct: 243 KIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKAGSWYAYQGERIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           EN+K +L  + ++ + I+  +R   G+ A
Sbjct: 303 ENAKTYLDNHADLQQTIKQQVRVAYGMAA 331


>gi|28572774|ref|NP_789554.1| recombinase A [Tropheryma whipplei TW08/27]
 gi|54039034|sp|P65982|RECA_TROW8 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|54041794|sp|P65981|RECA_TROWT RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|28410907|emb|CAD67292.1| recombinase A [Tropheryma whipplei TW08/27]
          Length = 437

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/350 (58%), Positives = 260/350 (74%), Gaps = 6/350 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +++++ALE AL+ I R YGKGA+M++      +  I+V+ +GS+ LD ALG+GG P+GRI
Sbjct: 7   INRTRALELALANIDRQYGKGAVMRMNDAQKAY--IDVIPTGSIALDYALGVGGLPRGRI 64

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTL LH IA  Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPD+
Sbjct: 65  VEIYGPESSGKTTLTLHAIASVQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDS 124

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI+DML+RS A+D+IVIDSVAAL PRAE+EGDMG+   G+QARLMSQALRK+TS 
Sbjct: 125 GEQALEISDMLIRSTAIDLIVIDSVAALVPRAELEGDMGDMHVGLQARLMSQALRKITSG 184

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++++    +FINQ+R K+GV FGSPETT GG ALKFY+SVRLDIRRV +IK      GN+
Sbjct: 185 LNQTGTTAIFINQLREKVGVFFGSPETTPGGRALKFYASVRLDIRRVETIKQGTEAVGNR 244

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQ EFD++YG GIS    LID  V   I+ KSG+W+ +   +LGQG
Sbjct: 245 TRVKVVKNKVAPPFKQAEFDVLYGVGISRESGLIDFAVDRGIIKKSGSWYVYGDDQLGQG 304

Query: 310 RENSKIFLRENIEIAENIE----SLLRQNAGLVADSLLQEPAINTKDDAD 355
           +EN++ FL EN  +A+ IE    SLL   +    D    + A+ T  D +
Sbjct: 305 KENARRFLLENKSVADEIENKIISLLGFRSNEFGDLPDHDAAVRTSPDTN 354


>gi|331701275|ref|YP_004398234.1| protein recA [Lactobacillus buchneri NRRL B-30929]
 gi|329128618|gb|AEB73171.1| Protein recA [Lactobacillus buchneri NRRL B-30929]
          Length = 379

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/346 (56%), Positives = 265/346 (76%), Gaps = 15/346 (4%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL+ AL  I++ +GKG+IM++G +      I  + SGSL LD ALG+GG+P+GRIVEIYG
Sbjct: 8   ALDKALKNIEKEFGKGSIMRMGDKADT--QISTIPSGSLALDDALGVGGYPRGRIVEIYG 65

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGEQ L
Sbjct: 66  PESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGL 125

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           +ITD LV SGA+DI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +IS++K
Sbjct: 126 QITDALVTSGAIDIVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISKTK 185

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
            I +FINQ+R K+GVMFG+PETT GG ALKFY+++RL+IRR   IKD  +I GN+ R+KV
Sbjct: 186 TIAIFINQIREKVGVMFGNPETTPGGRALKFYATIRLEIRRAEQIKDGTNIIGNRVRIKV 245

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK+A PFK+ E DIMYG+GIS  GEL+D+ V+  I++KSG+W+S+  +R+GQGREN+K
Sbjct: 246 VKNKVAPPFKRAEVDIMYGKGISQSGELVDMAVEKDIINKSGSWYSYGEERIGQGRENAK 305

Query: 315 IFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
            +L E+ ++ + +   +R              A +  D+ D D +D
Sbjct: 306 TYLEEHQDMYDEVMKKVR-------------AAYDIPDETDSDTSD 338


>gi|52630819|gb|AAU84877.1| RecA [Burkholderia sp. R15821]
          Length = 247

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/245 (80%), Positives = 222/245 (90%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGTCAF+DAE
Sbjct: 2   IQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKIGGTCAFIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA KLGV+L +LLISQPDTGEQALEITD LVRSG+VD+IVIDSVAAL PRAEIE
Sbjct: 62  HALDVQYASKLGVNLADLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG+SLPG+QARLMSQALRKLT+SI R+ C+++FINQ+RMKIGVMFGSPETTTGGNALK
Sbjct: 122 GDMGDSLPGLQARLMSQALRKLTASIKRTNCMVIFINQIRMKIGVMFGSPETTTGGNALK 181

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A PFKQ EFDIMYG GIS  GE+ID
Sbjct: 182 FYASVRLDIRRIGSIKKGDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGAGISREGEMID 241

Query: 285 LGVKA 289
           LGV+A
Sbjct: 242 LGVQA 246


>gi|242373577|ref|ZP_04819151.1| recombination protein RecA [Staphylococcus epidermidis M23864:W1]
 gi|242348940|gb|EES40542.1| recombination protein RecA [Staphylococcus epidermidis M23864:W1]
          Length = 369

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/327 (60%), Positives = 258/327 (78%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+  +  +++ +GKGA+M+LG        +   SSGS+ +D ALG+GG+PKGRI+
Sbjct: 23  ERQKALDTVIKNMEKSFGKGAVMKLGDNKG--RRVSSTSSGSVTVDNALGVGGYPKGRII 80

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD +YA+ LGVD+ NL +SQPD G
Sbjct: 81  EIYGPESSGKTTVALHAIAEVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHG 140

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI +  VRSGAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 141 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 200

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S    +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T
Sbjct: 201 SKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRT 260

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G+R+GQG+
Sbjct: 261 KIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGK 320

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN K +L+EN +I E I+  LR+  G+
Sbjct: 321 ENVKNYLKENPQIKEEIDRKLREKLGI 347


>gi|239631178|ref|ZP_04674209.1| RecA protein [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|301065939|ref|YP_003787962.1| recA/RadA recombinase [Lactobacillus casei str. Zhang]
 gi|239525643|gb|EEQ64644.1| RecA protein [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|300438346|gb|ADK18112.1| RecA/RadA recombinase [Lactobacillus casei str. Zhang]
          Length = 353

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 193/329 (58%), Positives = 263/329 (79%), Gaps = 2/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL +I++ +GKGAIM++G++      + VVSSGSL +D ALG+GGFP+GRIV
Sbjct: 5   ERQKALDVALKKIEKNFGKGAIMRMGAKADTR--VSVVSSGSLAVDDALGVGGFPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGV++  LL+SQPDTG
Sbjct: 63  EIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGA+DI+VIDSVAAL PRAEIEGDMG++  G+QARLMSQALRKL+ SI
Sbjct: 123 EQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKLSGSI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+G++FGSPETT GG ALKFY++VRL+IRR   IK    + GN+T
Sbjct: 183 NKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVVGNRT 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+    DIMYG+GIS  GEL+D+ V+  IV+K+G+W++++G+R+GQGR
Sbjct: 243 KIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKAGSWYAYQGERIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           EN+K +L  + ++ + I+  +R   G+ A
Sbjct: 303 ENAKTYLDNHADLQQTIKQQVRVAYGMAA 331


>gi|21674742|ref|NP_662807.1| recombinase A [Chlorobium tepidum TLS]
 gi|6225924|sp|O52393|RECA_CHLTE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|2760912|gb|AAC38569.1| RecA protein [Chlorobaculum tepidum]
 gi|21647953|gb|AAM73149.1| recA protein [Chlorobium tepidum TLS]
          Length = 346

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/345 (60%), Positives = 268/345 (77%), Gaps = 10/345 (2%)

Query: 4   RKEMNIVDKS--KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +++  +VD +  K L  A+  +++ +GKGAIM+LG   ++   ++V+S+GS+ LD ALG+
Sbjct: 8   QQQPPVVDPARLKQLNLAIETLEKQFGKGAIMRLGDDSAVMH-VQVISTGSMALDYALGV 66

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GR+ EIYGPESSGKTTLALH IA++QK GG  A VDAEHA D  YARKLGVD+  
Sbjct: 67  GGLPRGRVTEIYGPESSGKTTLALHAIAEAQKNGGIAALVDAEHAFDPTYARKLGVDINA 126

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQP++GEQAL I + LVRSGAVDIIVIDSVAAL P+AE+EG+MG+S+ G+QARLMSQ
Sbjct: 127 LLVSQPESGEQALSIVETLVRSGAVDIIVIDSVAALVPQAELEGEMGDSVVGLQARLMSQ 186

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT +IS+S  + +FINQ+R KIGVM+GSPETTTGG ALKFYSSVRLDIR++  IKD
Sbjct: 187 ALRKLTGAISKSSSVCLFINQLRDKIGVMYGSPETTTGGKALKFYSSVRLDIRKIAQIKD 246

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            + + GN+T+VKVVKNK+A PFK  EFDI+YGEGIS  GELIDL V+  I+ KSGAWFS+
Sbjct: 247 GEELVGNRTKVKVVKNKVAPPFKTAEFDILYGEGISVLGELIDLAVEFGIIKKSGAWFSY 306

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
             ++LGQGREN K  L+E+    E + + +RQ    V D L   P
Sbjct: 307 GTEKLGQGRENVKKLLKED----ETLRNTIRQQ---VRDMLTGAP 344


>gi|161789230|ref|YP_001595611.1| hypothetical protein BMSA_0024 [Vibrio sp. 23023]
 gi|161761355|gb|ABX77001.1| recA [Vibrio sp. 23023]
          Length = 364

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/347 (59%), Positives = 273/347 (78%), Gaps = 5/347 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+SKAL   L+ I++ +GKGAIM LG   ++   +E +S+GSL LDIALG GG P GR+V
Sbjct: 19  DRSKALTTCLAMIEKQFGKGAIMCLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRMV 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL L  IA +QK G TCAF+DAEHALD IYA KLGVD+ NLL+SQPDTG
Sbjct: 77  EVYGPESSGKTTLTLELIAAAQKQGKTCAFIDAEHALDPIYAEKLGVDIANLLVSQPDTG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSG+VD++V+DSVAALTP+AE+EG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 137 EQALEICDALARSGSVDVMVVDSVAALTPKAELEGEMGDSHMGLQARMLSQAMRKLTGNL 196

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIG  +G+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+T
Sbjct: 197 KQSNCMCIFINQIRMKIG-GYGNPETTTGGNALKFYASVRLDIRRTGSIKEGDDVIGNET 255

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E  I++G+G +  GELI+LGVK  I++KSG W+S++G ++GQGR
Sbjct: 256 KIKVVKNKIAPPFKTAETQILFGQGFNRTGELIELGVKQKIIEKSGVWYSYQGDKIGQGR 315

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           + +  +L E+  +++ IE LLR  A L+A ++  E  I +    D++
Sbjct: 316 QKACQYLVEHPAVSQEIEDLLR--AQLLAPTVPAEENIQSSTPVDQE 360


>gi|42782864|ref|NP_980111.1| recombinase A [Bacillus cereus ATCC 10987]
 gi|60392989|sp|P62210|RECA_BACC1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|42738791|gb|AAS42719.1| RecA [Bacillus cereus ATCC 10987]
          Length = 343

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/331 (62%), Positives = 266/331 (80%), Gaps = 2/331 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG Q      +  VSSGSL LD+ALG+GG+P+GRI+
Sbjct: 3   DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RKVSTVSSGSLALDVALGVGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPDTG
Sbjct: 61  EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   +K  + I GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF+  E DIMYGEGIS  GE++D+  +  IV KSGAW+S+  +RLGQGR
Sbjct: 241 KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           ENSK FL+EN ++ E I   +R++ G+  DS
Sbjct: 301 ENSKQFLKENTDLREEIAFFIREHHGISEDS 331


>gi|28493578|ref|NP_787739.1| recombinase A [Tropheryma whipplei str. Twist]
 gi|28476620|gb|AAO44708.1| recombinase A [Tropheryma whipplei str. Twist]
          Length = 447

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/350 (58%), Positives = 260/350 (74%), Gaps = 6/350 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +++++ALE AL+ I R YGKGA+M++      +  I+V+ +GS+ LD ALG+GG P+GRI
Sbjct: 17  INRTRALELALANIDRQYGKGAVMRMNDAQKAY--IDVIPTGSIALDYALGVGGLPRGRI 74

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTL LH IA  Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPD+
Sbjct: 75  VEIYGPESSGKTTLTLHAIASVQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDS 134

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI+DML+RS A+D+IVIDSVAAL PRAE+EGDMG+   G+QARLMSQALRK+TS 
Sbjct: 135 GEQALEISDMLIRSTAIDLIVIDSVAALVPRAELEGDMGDMHVGLQARLMSQALRKITSG 194

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++++    +FINQ+R K+GV FGSPETT GG ALKFY+SVRLDIRRV +IK      GN+
Sbjct: 195 LNQTGTTAIFINQLREKVGVFFGSPETTPGGRALKFYASVRLDIRRVETIKQGTEAVGNR 254

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQ EFD++YG GIS    LID  V   I+ KSG+W+ +   +LGQG
Sbjct: 255 TRVKVVKNKVAPPFKQAEFDVLYGVGISRESGLIDFAVDRGIIKKSGSWYVYGDDQLGQG 314

Query: 310 RENSKIFLRENIEIAENIE----SLLRQNAGLVADSLLQEPAINTKDDAD 355
           +EN++ FL EN  +A+ IE    SLL   +    D    + A+ T  D +
Sbjct: 315 KENARRFLLENKSVADEIENKIISLLGFRSNEFGDLPDHDAAVRTSPDTN 364


>gi|328948662|ref|YP_004365999.1| protein recA [Treponema succinifaciens DSM 2489]
 gi|328448986|gb|AEB14702.1| Protein recA [Treponema succinifaciens DSM 2489]
          Length = 422

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/325 (60%), Positives = 262/325 (80%), Gaps = 3/325 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALEAA  QI++ +G G++M+LG++      I+VV SGS+ LD ALGIGG+P+GR++
Sbjct: 14  EKLKALEAARLQIEKQFGTGSLMKLGTKTDT-ASIDVVPSGSILLDEALGIGGYPRGRVI 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTLALH +A++QK GG  AF+DAEHALD +YA+ LGV++  L +SQPDTG
Sbjct: 73  EMYGPESSGKTTLALHAVAEAQKLGGIAAFIDAEHALDPVYAKNLGVNIDELWVSQPDTG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDIIV+DSVAALTP+ EIEG+MG+S+ G+QARLMSQALRKLT+ +
Sbjct: 133 EQALEICENLVRSGAVDIIVVDSVAALTPQKEIEGEMGDSVMGLQARLMSQALRKLTAIV 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI--KDKDSITGN 248
            +SKCI+VFINQ+RMKIGVMFG+PETTTGGNALKFYSS+RL+IRR+ SI  K ++   GN
Sbjct: 193 GKSKCIVVFINQIRMKIGVMFGNPETTTGGNALKFYSSIRLEIRRIESIDGKGEEDAVGN 252

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + RVK+VKNK+A PF++VE DI +G+GIS    ++D  VK  ++DK GAW++   +++GQ
Sbjct: 253 RVRVKIVKNKVAPPFRKVELDIYFGKGISSAASILDSSVKHGLIDKRGAWYTRGEEKVGQ 312

Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333
           G+EN+  ++  N      +E+ LR+
Sbjct: 313 GKENAVAYIENNPAFKMELENTLRE 337


>gi|30263785|ref|NP_846162.1| recombinase A [Bacillus anthracis str. Ames]
 gi|49186629|ref|YP_029881.1| recombinase A [Bacillus anthracis str. Sterne]
 gi|118479000|ref|YP_896151.1| recombinase A [Bacillus thuringiensis str. Al Hakam]
 gi|225865760|ref|YP_002751138.1| protein RecA [Bacillus cereus 03BB102]
 gi|229186018|ref|ZP_04313188.1| hypothetical protein bcere0004_35650 [Bacillus cereus BGSC 6E1]
 gi|17368674|sp|Q9APZ2|RECA_BACAN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166199599|sp|A0RHF1|RECA_BACAH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|254790421|sp|C1EP03|RECA_BACC3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|12656081|gb|AAK00736.1| RecA-like [Bacillus anthracis]
 gi|30258429|gb|AAP27648.1| recA protein, group I intron-containing [Bacillus anthracis str.
           Ames]
 gi|49180556|gb|AAT55932.1| recA protein, group I intron-containing [Bacillus anthracis str.
           Sterne]
 gi|118418225|gb|ABK86644.1| RecA protein [Bacillus thuringiensis str. Al Hakam]
 gi|225787667|gb|ACO27884.1| RecA protein [Bacillus cereus 03BB102]
 gi|228597437|gb|EEK55087.1| hypothetical protein bcere0004_35650 [Bacillus cereus BGSC 6E1]
          Length = 343

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/331 (62%), Positives = 266/331 (80%), Gaps = 2/331 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG Q      +  VSSGSL LD+ALG+GG+P+GRI+
Sbjct: 3   DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RKVSTVSSGSLALDVALGVGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPDTG
Sbjct: 61  EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   +K  + I GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF+  E DIMYGEGIS  GE++D+  +  IV KSGAW+S+  +RLGQGR
Sbjct: 241 KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           ENSK FL+EN ++ E I   +R++ G+  DS
Sbjct: 301 ENSKQFLKENTDLREEIAFFIREHHGISEDS 331


>gi|325145691|gb|ADY86115.1| RecA [Burkholderia sp. V-16.5]
          Length = 337

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/327 (62%), Positives = 251/327 (76%), Gaps = 1/327 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKAL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEI
Sbjct: 1   SKALAAALAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSG++D+ VIDSVAAL P+AEIE                            
Sbjct: 120 ALEITDALVRSGSIDMXVIDSVAALVPKAEIEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 179

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
                   NQ+RMKIGVMFG PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRV
Sbjct: 180 XXXXXXXXNQIRMKIGVMFGXPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N
Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299

Query: 313 SKIFLRENIEIAENIESLLRQNAGLVA 339
           ++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 AREFLRENPEIAREIENRIRESLGVVA 326


>gi|229018975|ref|ZP_04175817.1| hypothetical protein bcere0030_34890 [Bacillus cereus AH1273]
 gi|229025220|ref|ZP_04181642.1| hypothetical protein bcere0029_35220 [Bacillus cereus AH1272]
 gi|228736048|gb|EEL86621.1| hypothetical protein bcere0029_35220 [Bacillus cereus AH1272]
 gi|228742303|gb|EEL92461.1| hypothetical protein bcere0030_34890 [Bacillus cereus AH1273]
          Length = 343

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/343 (60%), Positives = 272/343 (79%), Gaps = 2/343 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG Q      I  +SSGSL LD+ALG+GG+P+GRI+
Sbjct: 3   DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RRISTISSGSLALDVALGVGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPDTG
Sbjct: 61  EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   +K  + I GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF+  E DIMYGEGIS  GE++D+  +  IV KSGAW+S+  +RLGQGR
Sbjct: 241 KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           ENSK FL+EN ++ E I   +R++ G+  DS +++   +T  D
Sbjct: 301 ENSKQFLKENTDLREEIAFFVREHHGIGEDSGVEDTEDSTLQD 343


>gi|153952602|ref|YP_001398953.1| recombinase A [Campylobacter jejuni subsp. doylei 269.97]
 gi|166220637|sp|A7H623|RECA_CAMJD RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|152940048|gb|ABS44789.1| recA protein [Campylobacter jejuni subsp. doylei 269.97]
          Length = 343

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/328 (62%), Positives = 262/328 (79%), Gaps = 3/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+AAL  + + +GKG I++LG +    E I+ + +GS+GLD+ALGIGG PKGRIV
Sbjct: 4   NKRKSLDAALKSLDKTFGKGTILRLGDKE--VEQIDSIGTGSVGLDLALGIGGIPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD  YA+ LGV+  +L +SQPD G
Sbjct: 62  EIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLGVNTDDLYVSQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSGAVD+IV+DSVAALTP+AEIEGDMG+   G+QARLMSQALRKLT  +
Sbjct: 122 EQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRKLTGIV 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+R+KIG   +G+PETTTGGNALKFY+SVRLD+R++ ++K  +   GN+
Sbjct: 182 HKMNTTVIFINQIRIKIGATGYGTPETTTGGNALKFYASVRLDVRKIATLKQNEEPIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PF+Q EFD+M+GEG+S  GELID GVK  IVDKSGAWFS+K ++LGQG
Sbjct: 242 VKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           RENSK FL+EN EIA+ I   ++ + G+
Sbjct: 302 RENSKAFLKENPEIADEITKAIQNSMGI 329


>gi|30021871|ref|NP_833502.1| recombinase A [Bacillus cereus ATCC 14579]
 gi|228922494|ref|ZP_04085796.1| hypothetical protein bthur0011_34810 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228954057|ref|ZP_04116086.1| hypothetical protein bthur0006_34290 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228959986|ref|ZP_04121651.1| hypothetical protein bthur0005_34580 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229047465|ref|ZP_04193056.1| hypothetical protein bcere0027_34490 [Bacillus cereus AH676]
 gi|229111252|ref|ZP_04240806.1| hypothetical protein bcere0018_34980 [Bacillus cereus Rock1-15]
 gi|229129056|ref|ZP_04258029.1| hypothetical protein bcere0015_35010 [Bacillus cereus BDRD-Cer4]
 gi|229146351|ref|ZP_04274722.1| hypothetical protein bcere0012_34940 [Bacillus cereus BDRD-ST24]
 gi|229151980|ref|ZP_04280176.1| hypothetical protein bcere0011_35210 [Bacillus cereus m1550]
 gi|229191905|ref|ZP_04318875.1| hypothetical protein bcere0002_35620 [Bacillus cereus ATCC 10876]
 gi|296504278|ref|YP_003665978.1| recombinase A [Bacillus thuringiensis BMB171]
 gi|37537926|sp|Q81A16|RECA_BACCR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|29897427|gb|AAP10703.1| RecA protein [Bacillus cereus ATCC 14579]
 gi|228591456|gb|EEK49305.1| hypothetical protein bcere0002_35620 [Bacillus cereus ATCC 10876]
 gi|228631535|gb|EEK88168.1| hypothetical protein bcere0011_35210 [Bacillus cereus m1550]
 gi|228636984|gb|EEK93443.1| hypothetical protein bcere0012_34940 [Bacillus cereus BDRD-ST24]
 gi|228654293|gb|EEL10158.1| hypothetical protein bcere0015_35010 [Bacillus cereus BDRD-Cer4]
 gi|228672246|gb|EEL27536.1| hypothetical protein bcere0018_34980 [Bacillus cereus Rock1-15]
 gi|228723872|gb|EEL75226.1| hypothetical protein bcere0027_34490 [Bacillus cereus AH676]
 gi|228799729|gb|EEM46681.1| hypothetical protein bthur0005_34580 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228805623|gb|EEM52213.1| hypothetical protein bthur0006_34290 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228837208|gb|EEM82547.1| hypothetical protein bthur0011_34810 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|296325330|gb|ADH08258.1| recombinase A [Bacillus thuringiensis BMB171]
          Length = 343

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/331 (62%), Positives = 266/331 (80%), Gaps = 2/331 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG Q      +  VSSGSL LD+ALG+GG+P+GRI+
Sbjct: 3   DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RRVSTVSSGSLALDVALGVGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPDTG
Sbjct: 61  EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   +K  + I GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF+  E DIMYGEGIS  GE++D+  +  IV KSGAW+S+  +RLGQGR
Sbjct: 241 KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           ENSK FL+EN ++ E I   +R++ G+  DS
Sbjct: 301 ENSKQFLKENTDLREEIAFFIREHHGISEDS 331


>gi|222153873|ref|YP_002563050.1| recombinase A [Streptococcus uberis 0140J]
 gi|254790450|sp|B9DW65|RECA_STRU0 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|222114686|emb|CAR43767.1| RecA recombinase (recombinase A) [Streptococcus uberis 0140J]
          Length = 379

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/337 (59%), Positives = 262/337 (77%), Gaps = 6/337 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  DRRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++VIDSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KDS  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKDSSI 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK  E +IMYGEGIS  GELI +     ++ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELIKIASDLDVIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343
           GQG EN+K FL ++ EI + I+  +R   GL+ D +L
Sbjct: 316 GQGSENAKKFLADHPEIFDEIDHKVRVKVGLLEDEVL 352


>gi|22203527|gb|AAM92266.1| RecA [Bordetella avium]
          Length = 283

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/263 (74%), Positives = 231/263 (87%), Gaps = 1/263 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+ G    +   I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 22  QIEKQFGKGSIMRYGDN-EVEHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 80

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGTCAFVDAEHALD  YA KLGV+L +LLISQPDTGEQALEITD LV
Sbjct: 81  TLTLQVIAEMQKVGGTCAFVDAEHALDVQYASKLGVNLGDLLISQPDTGEQALEITDALV 140

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG+VD+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT++I R+ C+++FIN
Sbjct: 141 RSGSVDLIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTATIKRTNCMVIFIN 200

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK+A 
Sbjct: 201 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKGDEVVGNETRVKVVKNKVAP 260

Query: 262 PFKQVEFDIMYGEGISFFGELID 284
           PFKQ EFDIMYG GIS  GE+ID
Sbjct: 261 PFKQAEFDIMYGAGISREGEIID 283


>gi|229157358|ref|ZP_04285436.1| hypothetical protein bcere0010_35410 [Bacillus cereus ATCC 4342]
 gi|228626085|gb|EEK82834.1| hypothetical protein bcere0010_35410 [Bacillus cereus ATCC 4342]
          Length = 343

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/331 (62%), Positives = 266/331 (80%), Gaps = 2/331 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG Q      +  VSSGSL LD+ALG+GG+P+GRI+
Sbjct: 3   DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RRVSTVSSGSLALDVALGVGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPDTG
Sbjct: 61  EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   +K  + I GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF+  E DIMYGEGIS  GE++D+  +  IV KSGAW+S+  +RLGQGR
Sbjct: 241 KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           ENSK FL+EN ++ E I   +R++ G+  DS
Sbjct: 301 ENSKQFLKENTDLREEIAFFIREHHGISEDS 331


>gi|218235829|ref|YP_002368582.1| recombinase A [Bacillus cereus B4264]
 gi|226737751|sp|B7HDQ4|RECA_BACC4 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|218163786|gb|ACK63778.1| protein RecA [Bacillus cereus B4264]
          Length = 343

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/331 (62%), Positives = 266/331 (80%), Gaps = 2/331 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG Q      +  VSSGSL LD+ALG+GG+P+GRI+
Sbjct: 3   DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RRVSTVSSGSLALDVALGVGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPDTG
Sbjct: 61  EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   +K  + I GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF+  E DIMYGEGIS  GE++D+  +  IV KSGAW+S+  +RLGQGR
Sbjct: 241 KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           ENSK FL+EN ++ E I   +R++ G+  DS
Sbjct: 301 ENSKQFLKENTDLREEIAFFIREHHGISEDS 331


>gi|47568284|ref|ZP_00238987.1| RecA protein [Bacillus cereus G9241]
 gi|47555112|gb|EAL13460.1| RecA protein [Bacillus cereus G9241]
          Length = 343

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/331 (62%), Positives = 266/331 (80%), Gaps = 2/331 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG Q      +  VSSGSL LD+ALG+GG+P+GRI+
Sbjct: 3   DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RRVSTVSSGSLALDVALGVGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPDTG
Sbjct: 61  EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   +K  + I GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF+  E DIMYGEGIS  GE++D+  +  IV KSGAW+S+  +RLGQGR
Sbjct: 241 KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           ENSK FL+EN ++ E I   +R++ G+  DS
Sbjct: 301 ENSKQFLKENTDLREEIAFFIREHHGISEDS 331


>gi|27467881|ref|NP_764518.1| recombinase A [Staphylococcus epidermidis ATCC 12228]
 gi|57866790|ref|YP_188434.1| recombinase A [Staphylococcus epidermidis RP62A]
 gi|242242568|ref|ZP_04797013.1| recombination protein RecA [Staphylococcus epidermidis W23144]
 gi|251810716|ref|ZP_04825189.1| recombination protein RecA [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876283|ref|ZP_06285150.1| RecA protein [Staphylococcus epidermidis SK135]
 gi|293366751|ref|ZP_06613427.1| recombination protein A [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|30173244|sp|Q8CPF4|RECA_STAES RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|71152038|sp|Q5HPQ6|RECA_STAEQ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|27315426|gb|AAO04560.1|AE016747_57 RecA protein [Staphylococcus epidermidis ATCC 12228]
 gi|57637448|gb|AAW54236.1| recA protein [Staphylococcus epidermidis RP62A]
 gi|242233995|gb|EES36307.1| recombination protein RecA [Staphylococcus epidermidis W23144]
 gi|251805876|gb|EES58533.1| recombination protein RecA [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295308|gb|EFA87835.1| RecA protein [Staphylococcus epidermidis SK135]
 gi|291319052|gb|EFE59422.1| recombination protein A [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|319401426|gb|EFV89636.1| protein RecA [Staphylococcus epidermidis FRI909]
 gi|329728027|gb|EGG64471.1| RecA protein [Staphylococcus epidermidis VCU144]
 gi|329736291|gb|EGG72563.1| RecA protein [Staphylococcus epidermidis VCU028]
 gi|329736622|gb|EGG72888.1| RecA protein [Staphylococcus epidermidis VCU045]
          Length = 349

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/327 (60%), Positives = 257/327 (78%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+  +  +++ +GKGA+M+LG        +   SSGS+ +D ALG+GG+PKGRI+
Sbjct: 4   ERQKALDTVIKNMEKSFGKGAVMKLGDNKG--RRVSSTSSGSVTVDNALGVGGYPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD +YA+ LGVD+ NL +SQPD G
Sbjct: 62  EIYGPESSGKTTVALHAIAEVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI +  VRSGAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 122 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S    +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T
Sbjct: 182 SKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G R+GQG+
Sbjct: 242 KIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN K +L+EN +I E I+  LR+  G+
Sbjct: 302 ENVKNYLKENPQIKEEIDRKLREKLGI 328


>gi|313157806|gb|EFR57217.1| RecA protein [Alistipes sp. HGB5]
          Length = 338

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/323 (63%), Positives = 263/323 (81%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK K L A + +I++ +GKG+IM++ SQ      + V+ +GS+ LDIALG+GG+PKGR+V
Sbjct: 10  DKLKVLNAVMEKIEKDFGKGSIMRMNSQE--VSDVPVIPTGSITLDIALGVGGYPKGRVV 67

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA DS YA+KLGVD+ NLLISQPD G
Sbjct: 68  EIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDSFYAQKLGVDVDNLLISQPDNG 127

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L+RS A+DIIVIDSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLTSSI
Sbjct: 128 EQALEIADSLIRSSAIDIIVIDSVAALTPKAEIEGEMGDSKMGLQARLMSQALRKLTSSI 187

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++K + +FINQ+R KIGV++G+PETTTGGNALKFY+SVR+DIRR+  IKD +   G +T
Sbjct: 188 SKTKTVCIFINQLRDKIGVVYGNPETTTGGNALKFYASVRIDIRRMSVIKDGEEQLGTRT 247

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PFK+ EFDIM+GEGIS  GE++DLGV   +V K+G+WFS+  +++GQGR
Sbjct: 248 KVKVVKNKVAPPFKRAEFDIMFGEGISKIGEIVDLGVDYGVVKKAGSWFSYGDRKIGQGR 307

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           +  K  L+ + E+   IE  +R+
Sbjct: 308 DAVKELLKNDEELRNEIEGKVRE 330


>gi|210633076|ref|ZP_03297643.1| hypothetical protein COLSTE_01551 [Collinsella stercoris DSM 13279]
 gi|210159230|gb|EEA90201.1| hypothetical protein COLSTE_01551 [Collinsella stercoris DSM 13279]
          Length = 365

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/347 (57%), Positives = 263/347 (75%), Gaps = 7/347 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ K ++   ++I + +G G+IM+ G  G   E +E + +G++ LD ALGIGG P+GRI+
Sbjct: 19  EREKMIQVTKAEIIKKFGDGSIMRYGDGGPELE-VEAIPTGAISLDAALGIGGVPRGRII 77

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL+L  +A++Q  GG  AF+DAEHALD  YA ++GVD+  +LISQPDTG
Sbjct: 78  EIFGPESSGKTTLSLEILAEAQAMGGVAAFIDAEHALDPTYAARIGVDIDEVLISQPDTG 137

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D++VIDSVAAL PRAEIEG++GE+  G+QARLMSQALRKL  S+
Sbjct: 138 EQALEICDMLVRSGAIDVVVIDSVAALVPRAEIEGEIGETTVGLQARLMSQALRKLAGSL 197

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S    +FINQ+R KIGVMFGSPETTTGG ALKF+SSVR+DIRR+ SIK KD I GN+ 
Sbjct: 198 SKSNTTCIFINQLREKIGVMFGSPETTTGGRALKFFSSVRIDIRRIESIKIKDEIVGNRV 257

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R K+VKNK+A+PF+  EFDIMYG GIS  G ++D+ V+  I  KSGAW+++ G+RLGQGR
Sbjct: 258 RAKIVKNKVAAPFRTAEFDIMYGTGISKEGSVLDMAVEYEIATKSGAWYTYDGERLGQGR 317

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP---AINTKDDA 354
           E +K  LR+N E+ + ++  +R   GL    L  EP    ++  DDA
Sbjct: 318 EAAKDTLRKNPELLDELDHKVRVACGL---ELEDEPVGTVVDPGDDA 361


>gi|163941467|ref|YP_001646351.1| recombinase A [Bacillus weihenstephanensis KBAB4]
 gi|229012963|ref|ZP_04170128.1| hypothetical protein bmyco0001_34010 [Bacillus mycoides DSM 2048]
 gi|229134588|ref|ZP_04263398.1| hypothetical protein bcere0014_34970 [Bacillus cereus BDRD-ST196]
 gi|229168519|ref|ZP_04296242.1| hypothetical protein bcere0007_34760 [Bacillus cereus AH621]
 gi|229470326|sp|A9VS23|RECA_BACWK RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|163863664|gb|ABY44723.1| recA protein [Bacillus weihenstephanensis KBAB4]
 gi|228614925|gb|EEK72027.1| hypothetical protein bcere0007_34760 [Bacillus cereus AH621]
 gi|228648849|gb|EEL04874.1| hypothetical protein bcere0014_34970 [Bacillus cereus BDRD-ST196]
 gi|228748217|gb|EEL98077.1| hypothetical protein bmyco0001_34010 [Bacillus mycoides DSM 2048]
          Length = 343

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/343 (60%), Positives = 273/343 (79%), Gaps = 2/343 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG Q      I  +SSGSL LD+ALG+GG+P+GR++
Sbjct: 3   DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RRISTISSGSLALDVALGVGGYPRGRVI 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPDTG
Sbjct: 61  EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   +K  + I GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF+  E DIMYGEGIS  GE++D+  +  IV KSGAW+S+  +RLGQGR
Sbjct: 241 KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           ENSK FL+EN ++ E I   +R++ G+  +S +++   +T+ D
Sbjct: 301 ENSKQFLKENTDLREEIAFFVREHHGIGENSGVEDTEDSTRQD 343


>gi|310819516|ref|YP_003951874.1| Recombinase A [Stigmatella aurantiaca DW4/3-1]
 gi|309392588|gb|ADO70047.1| Recombinase A [Stigmatella aurantiaca DW4/3-1]
          Length = 343

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 202/330 (61%), Positives = 268/330 (81%), Gaps = 2/330 (0%)

Query: 7   MN-IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           MN + +K KA+ AA++ I++ +GKGA+M LG +    + + V++SGS+ LD ALG+GG+P
Sbjct: 1   MNKVAEKLKAVAAAVAAIEKQFGKGAVMALGGEAQ-EQKVAVIASGSVSLDRALGVGGYP 59

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GR+VE++G ESSGKT+L+LH IAQ Q +GG  AF+DAEHALD  YARKLGV ++ LLIS
Sbjct: 60  RGRVVELFGNESSGKTSLSLHAIAQVQASGGVAAFIDAEHALDVNYARKLGVRVEELLIS 119

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEIT+ LVRSGAVD+IV+DSVAAL PRAEIEG+MG++  G+QARLMSQALRK
Sbjct: 120 QPDTGEQALEITEQLVRSGAVDLIVVDSVAALVPRAEIEGEMGDAHMGVQARLMSQALRK 179

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT ++SRS   ++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRL+IRR G++K+ +SI
Sbjct: 180 LTGAVSRSGTCIIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLEIRRTGNLKEGESI 239

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            G + RVKVVKNK+A PF++ EFD++YG GI   GE++DLGV+   ++KSG+ FS +G+R
Sbjct: 240 IGTRARVKVVKNKLAPPFQEAEFDLLYGVGIHRAGEVLDLGVQLGFIEKSGSHFSLRGER 299

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNA 335
           +GQGRE +  +LRE+ +  E + + L   A
Sbjct: 300 IGQGRERATDWLREHPQALEALATELAGTA 329


>gi|228940857|ref|ZP_04103417.1| hypothetical protein bthur0008_34980 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228973778|ref|ZP_04134355.1| hypothetical protein bthur0003_35330 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228980333|ref|ZP_04140644.1| hypothetical protein bthur0002_35020 [Bacillus thuringiensis Bt407]
 gi|229104343|ref|ZP_04235012.1| hypothetical protein bcere0019_34910 [Bacillus cereus Rock3-28]
 gi|228679041|gb|EEL33249.1| hypothetical protein bcere0019_34910 [Bacillus cereus Rock3-28]
 gi|228779438|gb|EEM27694.1| hypothetical protein bthur0002_35020 [Bacillus thuringiensis Bt407]
 gi|228785930|gb|EEM33932.1| hypothetical protein bthur0003_35330 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818871|gb|EEM64936.1| hypothetical protein bthur0008_34980 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326941492|gb|AEA17388.1| recombinase A [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 343

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/343 (60%), Positives = 271/343 (79%), Gaps = 2/343 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG Q      I  +SSGSL LD+ALG+GG+P+GRI+
Sbjct: 3   DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RRISTISSGSLALDVALGVGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPDTG
Sbjct: 61  EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   +K  + I GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF+  E DIMYGEGIS  GE++D+  +  IV KSGAW+S+  +RLGQGR
Sbjct: 241 KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           ENSK FL+EN ++ E I   +R + G+  DS +++   +T  D
Sbjct: 301 ENSKQFLKENTDLREEIAFFVRDHHGIGEDSGVEDTEDSTLQD 343


>gi|61097707|emb|CAI38698.1| recombinase A [Chromobacterium piscinae]
          Length = 285

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/286 (67%), Positives = 243/286 (84%), Gaps = 1/286 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++ S   I E ++VVS+GSL LD+ALG+GG P+GR+VEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRM-SDNQINENLQVVSTGSLTLDLALGVGGLPRGRVVEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  +A+ QK GGTCA++DAE+ALD  YA+KLGV + +LLISQPDTGEQALEI DMLV
Sbjct: 60  TLCLQAVAEMQKLGGTCAYIDAENALDPQYAQKLGVKVDDLLISQPDTGEQALEICDMLV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RS  VD+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT +I R+  +++FIN
Sbjct: 120 RSSGVDLIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRTNTLVIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G IK  + + GN TRVKVVKNK++ 
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGGIKKGEEVIGNDTRVKVVKNKVSP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           PF+Q +F+I+YGEGIS  GE+I+LGVK   VDKSGAW+++ GQ++G
Sbjct: 240 PFRQADFEILYGEGISRQGEIIELGVKHGFVDKSGAWYAYNGQKIG 285


>gi|281421885|ref|ZP_06252884.1| protein RecA [Prevotella copri DSM 18205]
 gi|281404127|gb|EFB34807.1| protein RecA [Prevotella copri DSM 18205]
          Length = 343

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 201/322 (62%), Positives = 261/322 (81%), Gaps = 2/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+AA+++I++ +GKG+IM+LG +    E IEV+ +GS+ LD ALG+GG+PKGRI+E
Sbjct: 16  KLKALQAAMAKIEKDFGKGSIMKLGDEH--VENIEVIPTGSIALDNALGVGGYPKGRIIE 73

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD GE
Sbjct: 74  IYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDNGE 133

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL+I D L+ S AVDI+V+DSVAALTP+ EIEGDMG+++ G+QARLMSQALRKLTS+IS
Sbjct: 134 QALQIADQLISSAAVDIVVVDSVAALTPKKEIEGDMGDNVVGLQARLMSQALRKLTSTIS 193

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR+  +IKD D + GN  R
Sbjct: 194 KTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRKATAIKDGDEVIGNLVR 253

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF++ EFDIM+GEGIS  GE+  L V   I++KSG+W+S+ G +LGQG +
Sbjct: 254 VKVVKNKVAPPFRKAEFDIMFGEGISRAGEVFGLAVANDIIEKSGSWYSYGGSKLGQGAD 313

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
             K  L++N E+ + +E+ +R+
Sbjct: 314 ACKALLKDNPELLDELEAKVRE 335


>gi|306834535|ref|ZP_07467648.1| recombination protein A [Streptococcus bovis ATCC 700338]
 gi|304423337|gb|EFM26490.1| recombination protein A [Streptococcus bovis ATCC 700338]
          Length = 384

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/357 (56%), Positives = 272/357 (76%), Gaps = 7/357 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERKKALDDALKLIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G++  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDNHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KDS  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGSGDQKDSNI 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK  E +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTGELVKIASDLDIIKKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA-INTKDDADKDDTDNV 362
           GQG EN+K +L E+ E+ + I+  +R + GLV ++  +E A +  +  A  D+ D V
Sbjct: 316 GQGSENAKKYLAEHPEVFDEIDHKVRVHYGLVEETEYEEAADVVEESAATNDNVDEV 372


>gi|189485625|ref|YP_001956566.1| recombinase A [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|170287584|dbj|BAG14105.1| recombinase A [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 354

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/324 (65%), Positives = 268/324 (82%), Gaps = 1/324 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+ ALSQI++ +GK AIM+LG + S  E ++ + +G+L LDIA+GIGG P+GRI+
Sbjct: 5   EKLKALDLALSQIEKDFGKEAIMRLGEKHS-KERVDSIPTGALPLDIAIGIGGIPRGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLAL  +A++QK GG  A++DAEHA+D  YA+KLGVD+ NLLISQPD+G
Sbjct: 64  EIYGPESSGKTTLALCMVAEAQKLGGIAAYIDAEHAMDPEYAQKLGVDINNLLISQPDSG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D L+RSGAVDIIV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLTS+I
Sbjct: 124 EQGLEIADKLIRSGAVDIIVVDSVAALVPKAEIEGEMGDSFVGLQARLMSQALRKLTSNI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+SK  +VFINQ+R KIGVM+GSPETT GG ALKFYSSVRLDIRR+ SIK  D I GN+ 
Sbjct: 184 SKSKTSIVFINQLRQKIGVMWGSPETTPGGLALKFYSSVRLDIRRIESIKKGDEILGNRV 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF+I++G+GI   G LID+GV   I++K+GA+FS+ G+RLGQGR
Sbjct: 244 RVKVVKNKVAAPFKQAEFEIIFGQGIDKLGYLIDMGVNDGIIEKAGAFFSYNGERLGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQN 334
           +N K +L EN  +A  IE+ +R+ 
Sbjct: 304 DNVKTYLSENSAVAGEIEAKIREK 327


>gi|116494430|ref|YP_806164.1| RecA/RadA recombinase [Lactobacillus casei ATCC 334]
 gi|116104580|gb|ABJ69722.1| RecA protein [Lactobacillus casei ATCC 334]
          Length = 353

 Score =  408 bits (1049), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/329 (58%), Positives = 263/329 (79%), Gaps = 2/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL +I++ +GKGAIM++G++      + VVSSGSL +D ALG+GGFP+GRIV
Sbjct: 5   ERQKALDVALKKIEKNFGKGAIMRMGAKADTR--VSVVSSGSLAVDDALGVGGFPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGV++  LL+SQPDTG
Sbjct: 63  EIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGA+DI+VIDSVAAL PRAEIEGDMG++  G+QARLMSQALRKL+ SI
Sbjct: 123 EQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKLSGSI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+G++FGSPETT GG ALKFY++VRL+IRR   IK    + GN+T
Sbjct: 183 NKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVVGNRT 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+    DIMYG+GIS  GEL+D+ V+  IV+K+G+W++++G+R+GQGR
Sbjct: 243 KIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKAGSWYAYQGERIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           EN+K +L  + ++ + I+  +R   G+ +
Sbjct: 303 ENAKTYLDNHADLQQTIKQQVRVAYGMAS 331


>gi|291515720|emb|CBK64930.1| RecA protein [Alistipes shahii WAL 8301]
          Length = 338

 Score =  408 bits (1049), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/323 (62%), Positives = 265/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK K L+A + +I++ +GKG+IM++ S  +    I V+ +GS+ LD+ALG+GG+PKGR+V
Sbjct: 10  DKLKVLDAVMQKIEKDFGKGSIMRMNS--TEVNDIPVIPTGSITLDMALGVGGYPKGRVV 67

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA DS YA+KLGVD+ NLLISQPD G
Sbjct: 68  EIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDSFYAQKLGVDVDNLLISQPDNG 127

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L+RS A+DIIVIDSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLTSSI
Sbjct: 128 EQALEIADSLIRSSAIDIIVIDSVAALTPKAEIEGEMGDSKMGLQARLMSQALRKLTSSI 187

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++K + +FINQ+R KIGV++G+PETTTGGNALKFY+SVR+DIRR+  IKD +   G +T
Sbjct: 188 SKTKTVCIFINQLRDKIGVVYGNPETTTGGNALKFYASVRIDIRRMSVIKDGEDQLGTRT 247

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PFK+ EFDIM+GEGIS  GE++DLGV   +V K+G+WFS+  +++GQGR
Sbjct: 248 KVKVVKNKVAPPFKRAEFDIMFGEGISKIGEIVDLGVDYGVVKKAGSWFSYGDRKIGQGR 307

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           +  K  L+ + E+   IE+ +R+
Sbjct: 308 DAVKELLKNDEELRNEIEAKVRE 330


>gi|148879017|emb|CAM07024.1| RecA protein [Mycobacterium sp. MHSD2]
          Length = 288

 Score =  408 bits (1049), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 188/280 (67%), Positives = 238/280 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I V+ +GS+ LD+ALGIGG P+GR++EIYGPESSGKTT+ALH +A +Q+ GG  AF+DAE
Sbjct: 8   ISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAE 67

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA+KLGVD  +LL+SQPDTGEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIE
Sbjct: 68  HALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAIDLIVIDSVAALVPRAEIE 127

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFGSPETTTGG ALK
Sbjct: 128 GEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALK 187

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FYSSVRLD+RR+ ++KD     GN+TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID
Sbjct: 188 FYSSVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGKGISKEGSLID 247

Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           +GV+   + KSG+WF+++G++LGQG+EN++ FL EN+++A
Sbjct: 248 MGVEQGFIRKSGSWFTYEGEQLGQGKENARNFLLENVDVA 287


>gi|238020355|ref|ZP_04600781.1| hypothetical protein GCWU000324_00235 [Kingella oralis ATCC 51147]
 gi|237867335|gb|EEP68341.1| hypothetical protein GCWU000324_00235 [Kingella oralis ATCC 51147]
          Length = 370

 Score =  408 bits (1049), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/334 (62%), Positives = 267/334 (79%), Gaps = 6/334 (1%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKGAIM++    +  E ++V+S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKT
Sbjct: 33  QIEKSFGKGAIMKMDGS-TPQEELQVISTGSLGLDLALGVGGLPRGRIVEIFGPESSGKT 91

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L TIAQ QK GG CAF+DAE+A D +YARKLGV +++L++SQPDTGEQALEI DMLV
Sbjct: 92  TLCLETIAQCQKIGGVCAFIDAENAFDPVYARKLGVKVEDLMVSQPDTGEQALEICDMLV 151

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG VD++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  I ++  ++VFIN
Sbjct: 152 RSGGVDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGHIKKTNTLVVFIN 211

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK---DSITGNQTRVKVVKNK 258
           Q+RMKIGVMFG+PETTTGGNALKFYSSVR+DIR    IK     ++  G +T+VKVVKNK
Sbjct: 212 QLRMKIGVMFGNPETTTGGNALKFYSSVRIDIRGTTQIKPTGKDETPIGKETKVKVVKNK 271

Query: 259 MASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLR 318
           +A PF+   FDI+YGEGIS+ GELIDLG K  I+ KSGAW+S+ G ++GQG+EN +I+L+
Sbjct: 272 VAPPFRSAAFDILYGEGISWEGELIDLGDKYGIIQKSGAWYSYDGNKIGQGKENVRIWLK 331

Query: 319 ENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           EN EIA  I   +R   GLV + ++ E  ++  D
Sbjct: 332 ENPEIANQIAEKIRAE-GLV-NPIITEDVLDETD 363


>gi|71725929|gb|AAZ39082.1| homologous recombination protein [Exiguobacterium undae]
 gi|71725935|gb|AAZ39085.1| homologous recombination protein [Exiguobacterium undae]
          Length = 289

 Score =  408 bits (1049), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/291 (66%), Positives = 243/291 (83%), Gaps = 2/291 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG   S  + + V+SSGS+ LDIALG GG+P+GR++E+YGPESSGKTT+
Sbjct: 1   EKQFGKGSIMKLGE--SADQRVSVISSGSITLDIALGAGGYPRGRVIEVYGPESSGKTTV 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALH IA+ QK GG  AF+DAEHALD  YA KLGV++  LL+SQPDTGEQALEI + LVRS
Sbjct: 59  ALHAIAEVQKQGGQAAFIDAEHALDPAYANKLGVNIDELLLSQPDTGEQALEIAEALVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVDI+V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ + ++SK I++FINQ+
Sbjct: 119 GAVDILVVDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLSGATNKSKTIVIFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           R KIGVMFG+PETT GG ALKFYSSVRL++RR  ++K+   I GN+T++KVVKNK+A PF
Sbjct: 179 REKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKNGTDIVGNRTKLKVVKNKIAPPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           KQ E DIMYG+GIS FGELID+G    IV KSGAW+S+  +RLGQGRENSK
Sbjct: 239 KQAEVDIMYGQGISKFGELIDIGTDLDIVQKSGAWYSYNSERLGQGRENSK 289


>gi|76363335|sp|Q6KCK3|RECA_LACPE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|47600757|emb|CAF21791.1| recombinase A [Lactobacillus pentosus]
          Length = 378

 Score =  408 bits (1049), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 190/326 (58%), Positives = 256/326 (78%), Gaps = 2/326 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL +I++ +GKGAIM++G        I  +SSGSL LD ALG+GG+P+GRIVE
Sbjct: 5   RKAALDTALKKIEKNFGKGAIMRMGDAAQTT--ISTISSGSLALDDALGVGGYPRGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGE
Sbjct: 63  IYGPESSGKTTVALHAVAEVQKQGGTAAYIDAENALDPVYAEHLGVNIDDLLLSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q LEI D LV SGAVDI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +++
Sbjct: 123 QGLEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTLN 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++K I +FINQ+R K+GVMFG+PETT GG ALKFY+++RL++RR   IK+  +I GN+ R
Sbjct: 183 KTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATIRLEVRRAEQIKEGTNIIGNRVR 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           +KVVKNK+A PFK+ E DIMYG+GIS  GE++D+  +  IV KSG+W+S+   R+GQGRE
Sbjct: 243 IKVVKNKVAPPFKRAEVDIMYGQGISQTGEIVDMAAEKDIVKKSGSWYSYGDDRIGQGRE 302

Query: 312 NSKIFLRENIEIAENIESLLRQNAGL 337
           N+K +L E+ ++   I   +R   G+
Sbjct: 303 NAKKYLDEHPDVMAEIRQKVRDAYGM 328


>gi|291060058|gb|ADD72793.1| protein RecA [Treponema pallidum subsp. pallidum str. Chicago]
          Length = 408

 Score =  408 bits (1049), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 193/323 (59%), Positives = 266/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALEAA  QI++ +G+G++M+LG   ++ +G+EV+ +G++ LD ALGIGG+P+GRI+
Sbjct: 18  EKMKALEAARLQIEKQFGQGSLMKLGKDDAV-QGVEVIPTGNILLDEALGIGGYPRGRII 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTLALH +A++QK GG  AF+DAEHALD  YA+ LGV + +L ISQPDTG
Sbjct: 77  EIFGPESSGKTTLALHAVAEAQKRGGIAAFIDAEHALDPQYAKDLGVSVGDLWISQPDTG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDIIV+DSVAALTP+AEI+GDMG++  G+ ARLMSQALRKLTS I
Sbjct: 137 EQALEIAESLVRSGAVDIIVVDSVAALTPQAEIQGDMGDAHVGLIARLMSQALRKLTSII 196

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQ 249
           ++SKC L+FINQ+RMKIG+MFG+PETTTGG ALKFYSSVR+++R+V ++   D    GN+
Sbjct: 197 NKSKCTLIFINQLRMKIGIMFGNPETTTGGIALKFYSSVRIEVRKVETLSRGDEEAWGNK 256

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            R+++VKNKMA PF++VE +I++G+G S F  L+D  VK  I++K GAW++++ +++GQG
Sbjct: 257 VRIRIVKNKMAPPFRKVETEILFGKGFSAFSCLLDAAVKQEIIEKKGAWYAYREEKIGQG 316

Query: 310 RENSKIFLRENIEIAENIESLLR 332
           R+N+  FL++N++I   IE  +R
Sbjct: 317 RDNAVGFLQQNMDITLEIERAVR 339


>gi|126697091|ref|YP_001091977.1| recombinase A [Prochlorococcus marinus str. MIT 9301]
 gi|166220663|sp|A3PF51|RECA_PROM0 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|126544134|gb|ABO18376.1| RecA bacterial DNA recombination protein [Prochlorococcus marinus
           str. MIT 9301]
          Length = 365

 Score =  408 bits (1049), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 191/333 (57%), Positives = 263/333 (78%), Gaps = 3/333 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           ++ +K     +K KAL   L QI+R +G+G+IM+LG    +   +E +S+G+L LD+ALG
Sbjct: 3   LEEKKTTESKEKDKALSLVLGQIERNFGRGSIMRLGDASRM--KVETISTGALTLDLALG 60

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG+PKGR+VE+YGPESSGKTTL LH IA+ QK GG  AFVDAEHALD +YA  LGVD++
Sbjct: 61  -GGYPKGRVVEVYGPESSGKTTLTLHAIAEVQKNGGVAAFVDAEHALDPVYAASLGVDVE 119

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NLL+SQPDTGE ALEI D L+RS AVD++V+DSVAALTPRAEIEG+MG+ + G QARLMS
Sbjct: 120 NLLVSQPDTGEMALEIVDQLIRSSAVDLVVVDSVAALTPRAEIEGEMGDHVIGSQARLMS 179

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RK+T +I +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K
Sbjct: 180 QAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLK 239

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
                 G + +VKV KNK+A PF+  EFDI++G+GIS  G L+DL  + +I+ + GAW+S
Sbjct: 240 RGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYS 299

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           ++G+ +GQGR+N+ I+L +N+EI   +ES++++
Sbjct: 300 YEGENIGQGRDNTIIWLDQNLEIRNKVESMVKE 332


>gi|168334460|ref|ZP_02692631.1| RecA protein (recombinase A) [Epulopiscium sp. 'N.t. morphotype B']
          Length = 367

 Score =  408 bits (1048), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/326 (60%), Positives = 258/326 (79%), Gaps = 3/326 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN  D  KA+E A+S+I++ +GKG+IM+LG   SI   I+  S+G++ LDIALG GG P 
Sbjct: 1   MN-TDALKAVEEAVSKIEKKFGKGSIMKLGD--SINTKIKTFSTGAISLDIALGAGGIPI 57

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVE++GPESSGKTTL LH IA+ QK+GG  AF+DAEHALD  YA++LGV++ +L +SQ
Sbjct: 58  GRIVEVFGPESSGKTTLTLHMIAEVQKSGGIAAFIDAEHALDPEYAQRLGVNISDLYVSQ 117

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI + +V S A++++VIDSVAAL PRAEI+G+MG+S  G+QARLMSQALRKL
Sbjct: 118 PDNGEQALEIAETMVHSQAINLVVIDSVAALVPRAEIDGNMGDSHVGLQARLMSQALRKL 177

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T  +++S C ++FINQ+R K+GV+FG+PETT GG ALKFYSSVRLDIR+  +IK+   I 
Sbjct: 178 TGLVNKSNCTVIFINQLREKVGVIFGNPETTPGGRALKFYSSVRLDIRKAETIKNATEII 237

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G++TRVKVVKNK+A PFKQ EFDI+YGEGIS  G+++D  V   IV K GAW+S+ G ++
Sbjct: 238 GSKTRVKVVKNKIAPPFKQAEFDIIYGEGISSIGDILDTAVNIDIVAKGGAWYSYNGTKI 297

Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332
           GQGREN+K FL+EN  I   I++ +R
Sbjct: 298 GQGRENAKKFLQENQSILNEIDTAVR 323


>gi|15639679|ref|NP_219129.1| recombinase A [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189025917|ref|YP_001933689.1| recombinase A [Treponema pallidum subsp. pallidum SS14]
 gi|6093943|sp|O83690|RECA_TREPA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238689340|sp|B2S3T1|RECA_TREPS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|3322995|gb|AAC65660.1| recA protein (recA) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189018492|gb|ACD71110.1| protein RecA [Treponema pallidum subsp. pallidum SS14]
          Length = 407

 Score =  408 bits (1048), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 193/323 (59%), Positives = 266/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALEAA  QI++ +G+G++M+LG   ++ +G+EV+ +G++ LD ALGIGG+P+GRI+
Sbjct: 17  EKMKALEAARLQIEKQFGQGSLMKLGKDDAV-QGVEVIPTGNILLDEALGIGGYPRGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTLALH +A++QK GG  AF+DAEHALD  YA+ LGV + +L ISQPDTG
Sbjct: 76  EIFGPESSGKTTLALHAVAEAQKRGGIAAFIDAEHALDPQYAKDLGVSVGDLWISQPDTG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDIIV+DSVAALTP+AEI+GDMG++  G+ ARLMSQALRKLTS I
Sbjct: 136 EQALEIAESLVRSGAVDIIVVDSVAALTPQAEIQGDMGDAHVGLIARLMSQALRKLTSII 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQ 249
           ++SKC L+FINQ+RMKIG+MFG+PETTTGG ALKFYSSVR+++R+V ++   D    GN+
Sbjct: 196 NKSKCTLIFINQLRMKIGIMFGNPETTTGGIALKFYSSVRIEVRKVETLSRGDEEAWGNK 255

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            R+++VKNKMA PF++VE +I++G+G S F  L+D  VK  I++K GAW++++ +++GQG
Sbjct: 256 VRIRIVKNKMAPPFRKVETEILFGKGFSAFSCLLDAAVKQEIIEKKGAWYAYREEKIGQG 315

Query: 310 RENSKIFLRENIEIAENIESLLR 332
           R+N+  FL++N++I   IE  +R
Sbjct: 316 RDNAVGFLQQNMDITLEIERAVR 338


>gi|255994241|ref|ZP_05427376.1| protein RecA [Eubacterium saphenum ATCC 49989]
 gi|255993909|gb|EEU03998.1| protein RecA [Eubacterium saphenum ATCC 49989]
          Length = 376

 Score =  408 bits (1048), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 193/319 (60%), Positives = 257/319 (80%), Gaps = 2/319 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL  AL  I + +GKG+IM+LG +G++++ ++V+S+G++ LD+A GIGG P+GRIV
Sbjct: 19  EKERALNDALDLITKQFGKGSIMRLG-EGALYDEVDVISTGAISLDVATGIGGIPRGRIV 77

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL LH IA++QK GG  AF+DAEHALD  YARKLGVD++NL++SQP TG
Sbjct: 78  EVYGPESSGKTTLTLHVIAEAQKNGGRAAFIDAEHALDPEYARKLGVDVENLIVSQPSTG 137

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E AL I D LVRSGA+D++VIDSVAAL PR EIEG+MG +  G+QARLMSQALRKLT + 
Sbjct: 138 EDALSICDYLVRSGAIDVVVIDSVAALVPRTEIEGEMGSAHVGLQARLMSQALRKLTGAT 197

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S   L+FINQ+R K+G ++ +PETTTGG ALKFYSS+RLD+RR  SIK  D I GN+T
Sbjct: 198 QKSNTALIFINQLREKVGNIY-NPETTTGGRALKFYSSMRLDVRRSESIKTGDGIIGNKT 256

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VK+ KNKMA PFKQVEFDI++GEGIS  G+++D  V A +V+KSGAW+S   +++GQGR
Sbjct: 257 KVKLAKNKMAPPFKQVEFDIIFGEGISKEGDVLDEAVTAGLVNKSGAWYSMNSEKIGQGR 316

Query: 311 ENSKIFLRENIEIAENIES 329
           + +K +L++N +I E + S
Sbjct: 317 DAAKKYLKDNPKIYEELRS 335


>gi|34557830|ref|NP_907645.1| recombinase A [Wolinella succinogenes DSM 1740]
 gi|60393634|sp|Q7M8Q1|RECA_WOLSU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|34483548|emb|CAE10545.1| RECA PROTEIN [Wolinella succinogenes]
          Length = 350

 Score =  408 bits (1048), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/354 (60%), Positives = 278/354 (78%), Gaps = 11/354 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KA++ A+ QI + +GKGA+++LG +    E I+ +S+GSLGLDIALGIGG P+GRI+
Sbjct: 6   NKRKAIDLAIKQIDKAFGKGALVRLGEKP--VEKIDSISTGSLGLDIALGIGGIPQGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLAL  IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPD G
Sbjct: 64  EIYGPESSGKTTLALQVIAECQKKGGICAFIDAEHALDVSYAKRLGVDAENLLVSQPDYG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L RSGAVD+IV+DSVAALTP++EI+GDMG+   G+QARLMSQALRK+T  +
Sbjct: 124 EQALEILETLTRSGAVDLIVVDSVAALTPKSEIDGDMGDQHVGLQARLMSQALRKVTGVL 183

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+D+RR+ S+K  +   GN+
Sbjct: 184 HKMNTTVIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDVRRIASLKQGEQHIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF++ EFDIM+GEGIS  GELID GVK  IVDKSG+W S+  ++LGQG
Sbjct: 244 VKAKVVKNKVAPPFREAEFDIMFGEGISQEGELIDYGVKLDIVDKSGSWLSYGDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           +EN+K FL+EN EIA  I++ +    G +  S      I T  D D+D+++N+E
Sbjct: 304 KENAKAFLKENKEIANEIQAKI---IGAIGSS----DEITTFGD-DEDESENLE 349


>gi|47600762|emb|CAG26667.1| recombinase A [Lactobacillus plantarum subsp. argentoratensis]
 gi|47600764|emb|CAG26668.1| recombinase A [Lactobacillus plantarum subsp. argentoratensis]
          Length = 380

 Score =  408 bits (1048), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 191/328 (58%), Positives = 257/328 (78%), Gaps = 2/328 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL +I++ +GKGAIM++G        I  +SSGSL LD ALG+GG+P+GRIVE
Sbjct: 5   RKAALDTALKKIEKNFGKGAIMRMGDAAQTT--ISTISSGSLALDDALGVGGYPRGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGE
Sbjct: 63  IYGPESSGKTTVALHAVAEVQKQGGTAAYIDAENALDPVYAEHLGVNIDDLLLSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q LEI D LV SGAVDI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +++
Sbjct: 123 QGLEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTLN 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++K I +FINQ+R K+GVMFG+PETT GG ALKFY+++RL++RR   IK+  +I GN+ R
Sbjct: 183 KTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATIRLEVRRAEQIKEGTNIIGNRVR 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           +KVVKNK+A PFK+ E DIMYG+GIS  GE++D+  +  IV KSG+W+S+   R+GQGRE
Sbjct: 243 IKVVKNKVAPPFKRAEVDIMYGQGISQTGEIVDMAAEKDIVKKSGSWYSYGDDRIGQGRE 302

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVA 339
           N+K +L E+ ++   I   +R   G+ A
Sbjct: 303 NAKKYLDEHPDVMTEIRQKVRDAYGMDA 330


>gi|218898879|ref|YP_002447290.1| protein RecA [Bacillus cereus G9842]
 gi|228902282|ref|ZP_04066442.1| hypothetical protein bthur0014_34600 [Bacillus thuringiensis IBL
           4222]
 gi|228966723|ref|ZP_04127767.1| hypothetical protein bthur0004_35290 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|226737750|sp|B7ITN1|RECA_BACC2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|218541865|gb|ACK94259.1| protein RecA [Bacillus cereus G9842]
 gi|228792822|gb|EEM40380.1| hypothetical protein bthur0004_35290 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228857397|gb|EEN01897.1| hypothetical protein bthur0014_34600 [Bacillus thuringiensis IBL
           4222]
          Length = 343

 Score =  408 bits (1048), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/331 (62%), Positives = 265/331 (80%), Gaps = 2/331 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG Q      I  +SSGSL LD+ALG+GG+P+GRI+
Sbjct: 3   DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RRISTISSGSLALDVALGVGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPDTG
Sbjct: 61  EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   +K  + I GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF+  E DIMYGEGIS  GE++D+  +  IV KSGAW+S+  +RLGQGR
Sbjct: 241 KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           ENSK FL+EN ++ E I   +R + G+  DS
Sbjct: 301 ENSKQFLKENTDLREEIAFFVRDHHGIGEDS 331


>gi|319948417|ref|ZP_08022556.1| recombinase A [Dietzia cinnamea P4]
 gi|319437921|gb|EFV92902.1| recombinase A [Dietzia cinnamea P4]
          Length = 367

 Score =  408 bits (1048), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/347 (58%), Positives = 267/347 (76%), Gaps = 2/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ +ALE AL+QI + YGKG++M+LG        ++V+ SG+L LD+ALG+GGFP+GR+V
Sbjct: 17  NREQALELALAQIDKAYGKGSVMRLGD--DTRPPVQVIPSGALSLDVALGVGGFPRGRVV 74

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YARKLGVD  NL++SQPDTG
Sbjct: 75  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYARKLGVDTDNLIVSQPDTG 134

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLV+SGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 135 EQALEIADMLVKSGAIDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 194

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+T
Sbjct: 195 HNTGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGADAVGNRT 254

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PFK  EFDI+YGEGIS  G LID+GV    + KSG+WF++   +LGQG+
Sbjct: 255 KVKVVKNKVAPPFKIAEFDILYGEGISREGSLIDMGVDNGFIKKSGSWFTYGQDQLGQGK 314

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           EN++ +L++N  + + IE  +     + A + + E    + +DA  D
Sbjct: 315 ENARRYLKDNPSVRDEIERKILDKLNIGAGAEIAEIEAESDEDAPID 361


>gi|227535607|ref|ZP_03965656.1| recombination protein A [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227186737|gb|EEI66804.1| recombination protein A [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 353

 Score =  408 bits (1048), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/329 (58%), Positives = 262/329 (79%), Gaps = 2/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL +I++ +GKGAIM++G++      + VVSSGSL +D ALG+G FP+GRIV
Sbjct: 5   ERQKALDVALKKIEKNFGKGAIMRMGAKADTR--VSVVSSGSLAVDDALGVGSFPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGV++  LL+SQPDTG
Sbjct: 63  EIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGA+DI+VIDSVAAL PRAEIEGDMG++  G+QARLMSQALRKL+ SI
Sbjct: 123 EQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKLSGSI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+G++FGSPETT GG ALKFY++VRL+IRR   IK    + GN+T
Sbjct: 183 NKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVVGNRT 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+    DIMYG+GIS  GEL+D+ V+  IV+K+G+W++++G+R+GQGR
Sbjct: 243 KIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKAGSWYAYQGERIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           EN+K +L  + ++ + I+  +R   G+ A
Sbjct: 303 ENAKTYLDNHADLQQTIKQQVRVAYGMAA 331


>gi|91202500|emb|CAJ72139.1| strongly similar to RecA protein (recombinase A) [Candidatus
           Kuenenia stuttgartiensis]
          Length = 364

 Score =  407 bits (1047), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/324 (60%), Positives = 261/324 (80%), Gaps = 6/324 (1%)

Query: 9   IVDKSK---ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           I DK K   ALE A+S I + +GKG IM+LG  G     + V+S+G+L LD+ALG+GG P
Sbjct: 7   IPDKEKRQQALERAISHIDKQFGKGTIMKLG--GDTKLDVPVISTGALSLDVALGVGGIP 64

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GR++EI+G ESSGKTTL L  IA +Q+ GG  AF+DAEHALDS YA++LGV+L +L+++
Sbjct: 65  RGRVIEIFGQESSGKTTLTLQIIANAQRGGGVAAFIDAEHALDSEYAKRLGVNLNDLMVN 124

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEI ++LVRS AVD+IVIDSVAAL PRAEIEG+MG++  G+QARLMSQALRK
Sbjct: 125 QPDTGEQALEIAELLVRSNAVDVIVIDSVAALVPRAEIEGEMGDTHIGLQARLMSQALRK 184

Query: 186 LTSSISRSKCILVFINQMRMKIGVMF-GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           LT+ IS+S+  ++FINQ+R KIGVM+ G+PETT GG ALKFY+SVR+DIRR+GSIKD D+
Sbjct: 185 LTACISKSRTSVIFINQIREKIGVMYGGNPETTPGGRALKFYASVRIDIRRIGSIKDGDA 244

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           I G++ R  + KNK+A+PFK+ EFDI+Y  GIS  G+++DLG + +I++KSG W+S++  
Sbjct: 245 IIGSRVRATIAKNKVAAPFKRAEFDILYNTGISRAGDILDLGAEHNIIEKSGTWYSYRET 304

Query: 305 RLGQGRENSKIFLRENIEIAENIE 328
           RLGQGRENS+ FL E+ E+ + IE
Sbjct: 305 RLGQGRENSRQFLTEHPEMMKEIE 328


>gi|302392234|ref|YP_003828054.1| RecA protein [Acetohalobium arabaticum DSM 5501]
 gi|302204311|gb|ADL12989.1| RecA protein [Acetohalobium arabaticum DSM 5501]
          Length = 349

 Score =  407 bits (1047), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 198/329 (60%), Positives = 256/329 (77%), Gaps = 3/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL+  L QI++ +GKG+IM+LG   ++   +E + +G+L LD+ALG+GG P+GRIV
Sbjct: 4   EKEEALKRTLKQIEKEHGKGSIMRLGEANTL--DVEAIPTGALSLDVALGVGGIPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E++GPE+SGKTT+ALH IA++QK  G  AF+DAEHALD  YA+ LGVD+  LLISQP+TG
Sbjct: 62  EVFGPEASGKTTVALHMIAETQKMDGVAAFIDAEHALDPKYAKNLGVDIDELLISQPNTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ALEI + LVRSGA+DI+V+DSVAAL P AEIEG+MG+S  G+QARLMSQA+RKL+ +I
Sbjct: 122 EEALEICESLVRSGAIDIVVVDSVAALVPEAEIEGEMGDSHVGLQARLMSQAMRKLSGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+SK   +FINQ+R K+GV FG+PETT GG ALKFYSSVRLDIRR  +IKD D   GN+T
Sbjct: 182 SKSKTTCIFINQIREKVGVRFGNPETTPGGRALKFYSSVRLDIRRRKAIKDGDEFLGNKT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ-RLGQG 309
           RVKVVKNK+A PFK  EFDIMYG GIS  G ++D+ V   IV++SGAW+S+     LGQG
Sbjct: 242 RVKVVKNKVAPPFKTAEFDIMYGTGISKTGCILDMAVDHDIVERSGAWYSYGDDVTLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLV 338
           R NSK  L EN E+   IE  ++Q  G++
Sbjct: 302 RANSKEALEENPELLAEIEKKVKQELGMI 330


>gi|28378887|ref|NP_785779.1| recombinase A [Lactobacillus plantarum WCFS1]
 gi|254557092|ref|YP_003063509.1| recombinase A [Lactobacillus plantarum JDM1]
 gi|300769723|ref|ZP_07079606.1| recombination protein A [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308181087|ref|YP_003925215.1| recombinase A [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|37537944|sp|Q88UZ4|RECA_LACPL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|28271724|emb|CAD64630.1| recombinase A [Lactobacillus plantarum WCFS1]
 gi|47600759|emb|CAF21793.1| recombinase A [Lactobacillus plantarum subsp. plantarum]
 gi|254046019|gb|ACT62812.1| recombinase A [Lactobacillus plantarum JDM1]
 gi|300492766|gb|EFK27951.1| recombination protein A [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308046578|gb|ADN99121.1| recombinase A [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 380

 Score =  407 bits (1047), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 191/328 (58%), Positives = 257/328 (78%), Gaps = 2/328 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL +I++ +GKGAIM++G        I  +SSGSL LD ALG+GG+P+GRIVE
Sbjct: 5   RKAALDTALKKIEKNFGKGAIMRMGDAAQTT--ISTISSGSLALDDALGVGGYPRGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGE
Sbjct: 63  IYGPESSGKTTVALHAVAEVQKQGGTAAYIDAENALDPVYAEHLGVNIDDLLLSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q LEI D LV SGAVDI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +++
Sbjct: 123 QGLEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTLN 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++K I +FINQ+R K+GVMFG+PETT GG ALKFY+++RL++RR   IK+  +I GN+ R
Sbjct: 183 KTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATIRLEVRRAEQIKEGTNIIGNRVR 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           +KVVKNK+A PFK+ E DIMYG+GIS  GE++D+  +  IV KSG+W+S+   R+GQGRE
Sbjct: 243 IKVVKNKVAPPFKRAEVDIMYGQGISQTGEIVDMAAEKDIVKKSGSWYSYGDDRIGQGRE 302

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVA 339
           N+K +L E+ ++   I   +R   G+ A
Sbjct: 303 NAKKYLDEHPDVMTEIRQKVRDAYGMDA 330


>gi|291276423|ref|YP_003516195.1| recombination protein RecA [Helicobacter mustelae 12198]
 gi|290963617|emb|CBG39449.1| recA protein [Helicobacter mustelae 12198]
          Length = 346

 Score =  407 bits (1047), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/336 (60%), Positives = 262/336 (77%), Gaps = 4/336 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KA+E AL QI + +GKGA+++LG +    E IE +S+GSLGLD+ALGI G PKGRI+E
Sbjct: 6   KKKAIELALKQIDKTFGKGALVRLGDKQ--VEKIEAISTGSLGLDLALGINGIPKGRIIE 63

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL+L  +A+ Q+ GG CAF+DAEHALD  YA++LGVD +NLL+SQPD GE
Sbjct: 64  IYGPESSGKTTLSLQIVAECQRNGGICAFIDAEHALDVYYAKRLGVDTENLLVSQPDNGE 123

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI + L RSGAVD++VIDSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + 
Sbjct: 124 QALEILETLTRSGAVDLVVIDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLH 183

Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +    L+FINQ+RMKIG M +GSPETTTGGNALKFY+SVR+DIRR+ ++K  D   GN+ 
Sbjct: 184 KMNTTLIFINQIRMKIGTMGYGSPETTTGGNALKFYASVRIDIRRIATLKQADQQIGNRV 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           + KVVKNK+A PF++ EFDIM+GEGIS  GE+ID G+K  I+DKSGAW S+  ++LGQGR
Sbjct: 244 KAKVVKNKVAPPFREAEFDIMFGEGISIEGEIIDYGIKLDIIDKSGAWLSYGDKKLGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           EN+K+ L+E+  +A  I   +R+      D +L  P
Sbjct: 304 ENAKLLLKEDKTLAAEITQKIREQIN-ATDEILPLP 338


>gi|256827177|ref|YP_003151136.1| RecA protein [Cryptobacterium curtum DSM 15641]
 gi|256583320|gb|ACU94454.1| RecA protein [Cryptobacterium curtum DSM 15641]
          Length = 352

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/324 (59%), Positives = 251/324 (77%), Gaps = 1/324 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K L+    QI++ +G+G IM+LG      E + V+ +G+L LD ALGIGG P+GRI+
Sbjct: 6   EKEKMLKITTDQIEQRFGRGTIMKLGENDHSLE-VGVIPTGALPLDAALGIGGVPRGRII 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH +A++Q  GG  AF+DAEHALD +YA +LGVD+ +LLISQPDTG
Sbjct: 65  EIYGPESSGKTTLALHILAEAQALGGIAAFIDAEHALDPVYAARLGVDVDDLLISQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D ++IDSVAAL PRAEIEG++GE+  G+QARLMSQALRKL  S+
Sbjct: 125 EQALEICDMLVRSGAIDCVIIDSVAALVPRAEIEGEIGETTVGLQARLMSQALRKLAGSL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SRS    +FINQ+R KIG+MFG+PETTTGG ALKF+SSVR+D+RR   +K      GN+ 
Sbjct: 185 SRSNTTCIFINQLREKIGIMFGNPETTTGGRALKFFSSVRIDVRRCDYVKLNGETIGNRV 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R KVVKNK+A PF+Q EFD++YGEGIS  G ++D+ V+  I  KSGAW+++  +RLGQGR
Sbjct: 245 RAKVVKNKVAPPFRQAEFDLIYGEGISKTGCILDMAVECGIAKKSGAWYTYGEERLGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLRQN 334
           E +K  L E+ ++ E IE+ +R+ 
Sbjct: 305 EAAKHTLEEHPDLREEIEAKVREE 328


>gi|89145052|emb|CAJ57534.1| recombinase A [Microbacterium testaceum]
          Length = 294

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 192/284 (67%), Positives = 235/284 (82%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE + +GS+ LD+ALGIGG P+GRI+EIYGPESSGKTTL LH IA +Q+ GG  AF+DAE
Sbjct: 9   IETIPTGSVALDVALGIGGLPRGRIIEIYGPESSGKTTLTLHAIANAQRAGGIAAFIDAE 68

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA+KLGVD+  LL+SQPDTGEQALEI DML+RSGA+D++VIDSVAAL P AEI+
Sbjct: 69  HALDPEYAKKLGVDIDALLVSQPDTGEQALEIADMLIRSGAIDLVVIDSVAALVPEAEIK 128

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKLT  ++ +K   +FINQ+R KIGV FGSPETT GG ALK
Sbjct: 129 GEMGDSHVGLQARLMSQALRKLTGGLNTTKTTAIFINQLREKIGVFFGSPETTAGGKALK 188

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA PFKQ EFDI+YG GIS  G LID
Sbjct: 189 FYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKMAPPFKQAEFDILYGVGISREGSLID 248

Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
            GV+ +IV KSGAW+++ G++LGQG+EN++ FL +N +IAE IE
Sbjct: 249 FGVEHAIVKKSGAWYTYDGEQLGQGKENARNFLIKNPDIAEEIE 292


>gi|157414167|ref|YP_001485033.1| recombinase A [Prochlorococcus marinus str. MIT 9215]
 gi|166918714|sp|A8G766|RECA_PROM2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|157388742|gb|ABV51447.1| RecA DNA recombination protein [Prochlorococcus marinus str. MIT
           9215]
          Length = 365

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/333 (57%), Positives = 263/333 (78%), Gaps = 3/333 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           ++ +K     +K KAL   L QI+R +G+G+IM+LG    +   +E +S+G+L LD+ALG
Sbjct: 3   LEEKKTTESKEKDKALSLVLGQIERNFGRGSIMRLGDASRM--KVETISTGALTLDLALG 60

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG+PKGR+VE+YGPESSGKTTL LH IA+ QK GG  AFVDAEHALD +YA  LGVD++
Sbjct: 61  -GGYPKGRVVEVYGPESSGKTTLTLHAIAEVQKNGGVAAFVDAEHALDPVYAASLGVDVE 119

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NLL+SQPDTGE ALEI D L+RS AVD++V+DSVAALTPRAEIEG+MG+ + G QARLMS
Sbjct: 120 NLLVSQPDTGEMALEIVDQLIRSSAVDLVVVDSVAALTPRAEIEGEMGDHVIGSQARLMS 179

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RK+T +I +S C ++F+NQ+R+KIG+ +G+PETTTGGNALKFY+SVRLDIRR+ ++K
Sbjct: 180 QAMRKITGNIGKSGCTVIFLNQLRLKIGITYGNPETTTGGNALKFYASVRLDIRRIQTLK 239

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
                 G + +VKV KNK+A PF+  EFDI++G+GIS  G L+DL  + +I+ + GAW+S
Sbjct: 240 RGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYS 299

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           ++G+ +GQGR+N+ I+L +N+EI   +ES++++
Sbjct: 300 YEGENIGQGRDNTIIWLDQNLEIKNKVESMIKE 332


>gi|254526096|ref|ZP_05138148.1| protein RecA [Prochlorococcus marinus str. MIT 9202]
 gi|221537520|gb|EEE39973.1| protein RecA [Prochlorococcus marinus str. MIT 9202]
          Length = 365

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/333 (57%), Positives = 263/333 (78%), Gaps = 3/333 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           ++ +K     +K KAL   L QI+R +G+G+IM+LG    +   +E +S+G+L LD+ALG
Sbjct: 3   LEEKKTTESKEKDKALSLVLGQIERNFGRGSIMRLGDASRM--KVETISTGALTLDLALG 60

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG+PKGR+VE+YGPESSGKTTL LH IA+ QK GG  AFVDAEHALD +YA  LGVD++
Sbjct: 61  -GGYPKGRVVEVYGPESSGKTTLTLHAIAEVQKNGGVAAFVDAEHALDPVYAASLGVDVE 119

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NLL+SQPDTGE ALEI D L+RS AVD++V+DSVAALTPRAEIEG+MG+ + G QARLMS
Sbjct: 120 NLLVSQPDTGEMALEIVDQLIRSSAVDLVVVDSVAALTPRAEIEGEMGDHVIGSQARLMS 179

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RK+T +I +S C ++F+NQ+R+KIG+ +G+PETTTGGNALKFY+SVRLDIRR+ ++K
Sbjct: 180 QAMRKITGNIGKSGCTVIFLNQLRLKIGITYGNPETTTGGNALKFYASVRLDIRRIQTLK 239

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
                 G + +VKV KNK+A PF+  EFDI++G+GIS  G L+DL  + +I+ + GAW+S
Sbjct: 240 RGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYS 299

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           ++G+ +GQGR+N+ I+L +N+EI   +ES++++
Sbjct: 300 YEGENIGQGRDNTIIWLDQNLEIKNKVESMVKE 332


>gi|90962105|ref|YP_536021.1| recombinase A [Lactobacillus salivarius UCC118]
 gi|227891127|ref|ZP_04008932.1| recombination protein A [Lactobacillus salivarius ATCC 11741]
 gi|90821299|gb|ABD99938.1| Recombinase A [Lactobacillus salivarius UCC118]
 gi|227867001|gb|EEJ74422.1| recombination protein A [Lactobacillus salivarius ATCC 11741]
 gi|300214791|gb|ADJ79207.1| Protein recA [Lactobacillus salivarius CECT 5713]
          Length = 381

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/357 (56%), Positives = 270/357 (75%), Gaps = 10/357 (2%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL+AAL +I++ +GKG+IM++G  G +   I  +SSGS+ +D  LG+GG+P+GRI+EIY
Sbjct: 18  KALDAALKKIEKKFGKGSIMKMG--GKVDTKISTISSGSIAIDAGLGVGGYPRGRIIEIY 75

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  YA  LGV++  LL+SQPDTGEQ 
Sbjct: 76  GPESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPAYATALGVNIDELLLSQPDTGEQG 135

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI D LV SGA+DIIV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I+++
Sbjct: 136 LEIADALVSSGAIDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGTINKT 195

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
           K + +FINQ+R K+GVMFG+PETT GG ALKFYS+VR+++RR  +IK K  I GN+T++K
Sbjct: 196 KTVAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRMEVRRSEAIKAKSEIIGNRTKIK 255

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
            VKNK+A PFK  E DIMYGEGIS  GEL+D+ V+  I+ KSG+WFS+   R+GQGREN+
Sbjct: 256 FVKNKVAPPFKVAEVDIMYGEGISKTGELLDMAVEKDIIHKSGSWFSYGDTRIGQGRENA 315

Query: 314 KIFLRENIEIAENIESLLRQNAGL------VADSLLQEPAINTKDD--ADKDDTDNV 362
           K +L E+ +    I   +R+  G+      V +S  +    +  DD  AD DD++ V
Sbjct: 316 KEYLSEHEDEMNEINIKVREAYGIPDENGNVPESQDKNTTQSAMDDKAADIDDSEEV 372


>gi|29350018|ref|NP_813521.1| recombinase A [Bacteroides thetaiotaomicron VPI-5482]
 gi|253572736|ref|ZP_04850136.1| recombinase A [Bacteroides sp. 1_1_6]
 gi|298384362|ref|ZP_06993922.1| protein RecA [Bacteroides sp. 1_1_14]
 gi|29341929|gb|AAO79715.1| RecA [Bacteroides thetaiotaomicron VPI-5482]
 gi|251837636|gb|EES65727.1| recombinase A [Bacteroides sp. 1_1_6]
 gi|298262641|gb|EFI05505.1| protein RecA [Bacteroides sp. 1_1_14]
          Length = 344

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/321 (61%), Positives = 262/321 (81%), Gaps = 2/321 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+A + +I++ +GKG+IM++G      E +EV+ +GS+ L++ALG+GG+P+GRI+
Sbjct: 19  EKLKALQATMEKIEKNFGKGSIMKMGDDS--VEQVEVIPTGSIALNVALGVGGYPRGRII 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD G
Sbjct: 77  EIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDNG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++  G+QARLMSQALRKLT ++
Sbjct: 137 EQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTGTV 196

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+++   +FINQ+R KIGVMFG+PETTTGGNALKFY+SVR+DIR    IKD + + G  T
Sbjct: 197 SKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRIDIRGSQPIKDGEEVLGKLT 256

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG +  I+ KSG+W+S+   +LGQGR
Sbjct: 257 KVKVVKNKVAPPFRKAEFDIMFGEGISHSGEIIDLGAELGIIKKSGSWYSYNDTKLGQGR 316

Query: 311 ENSKIFLRENIEIAENIESLL 331
           + +K+ +++N E+AE +E L+
Sbjct: 317 DAAKVCIKDNPELAEELEGLI 337


>gi|78185515|ref|YP_377950.1| recombinase A [Synechococcus sp. CC9902]
 gi|123729905|sp|Q3AUV9|RECA_SYNS9 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|78169809|gb|ABB26906.1| RecA protein [Synechococcus sp. CC9902]
          Length = 376

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/323 (60%), Positives = 254/323 (78%), Gaps = 3/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL   L QI+R +GKG+IM+LG    +   +E +S+G+L LD+ALG GG+PKGR+V
Sbjct: 19  ERDKALNLVLGQIERNFGKGSIMRLGDASRMR--VETISTGALTLDLALG-GGYPKGRVV 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG  AFVDAEHALD  YA  LGVD++NLL+SQPDTG
Sbjct: 76  EIYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPHYAASLGVDVENLLVSQPDTG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D LVRS AVDI+VIDSVAALTPR+EIEG+MG+   G QARLMSQA+RK+T +I
Sbjct: 136 EMALEIVDQLVRSAAVDIVVIDSVAALTPRSEIEGEMGDVSVGAQARLMSQAMRKITGNI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C ++F+NQ+R+KIGVM+G+PETTTGGNALKFY+SVRLDIRR+ ++K      G + 
Sbjct: 196 GKSGCTVIFLNQLRLKIGVMYGNPETTTGGNALKFYASVRLDIRRIQTLKKGTEEFGIRA 255

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV KNK+A PF+  EFDI++G GIS  G L+DL  +  +V + GAW+S++G  +GQGR
Sbjct: 256 KVKVAKNKVAPPFRIAEFDILFGRGISTVGCLLDLAEETGVVVRKGAWYSYEGDNIGQGR 315

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           +N+ +++ +N E A  IE+L+RQ
Sbjct: 316 DNTIVWMEQNPEAATTIETLVRQ 338


>gi|33862118|ref|NP_893679.1| recombinase A [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|50403571|sp|Q7UZU3|RECA_PROMP RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|33634336|emb|CAE20021.1| RecA bacterial DNA recombination protein [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 370

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 192/328 (58%), Positives = 262/328 (79%), Gaps = 3/328 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           KE +  +K+KAL   L QI+R +G+G+IM+LG    +   +E +S+G+L LD+ALG GG+
Sbjct: 12  KESSSEEKNKALNLVLGQIERNFGRGSIMRLGDASRM--KVETISTGALTLDLALG-GGY 68

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGR+VE+YGPESSGKTTL LH IA+ QK GG  AFVDAEHALD +YA  LGVD++NLL+
Sbjct: 69  PKGRVVEVYGPESSGKTTLTLHAIAEVQKNGGIAAFVDAEHALDPVYAASLGVDVENLLV 128

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGE ALEI D L+RS AVD++V+DSVAALTPRAEIEG+MG+ + G QARLMSQA+R
Sbjct: 129 SQPDTGEMALEIVDQLIRSTAVDLVVVDSVAALTPRAEIEGEMGDHVIGSQARLMSQAMR 188

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           K+T +I +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K    
Sbjct: 189 KITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTE 248

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
             G + +VKV KNK+A PF+  EFDI++G+GIS  G L+DL  + +I+ + GAW+S++G+
Sbjct: 249 EYGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYSYEGE 308

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLR 332
            +GQGR+N+ I+L +N+EI   +ES+++
Sbjct: 309 NIGQGRDNTIIWLDQNLEIKNKVESIVK 336


>gi|310777953|ref|YP_003966286.1| recA protein [Ilyobacter polytropus DSM 2926]
 gi|309747276|gb|ADO81938.1| recA protein [Ilyobacter polytropus DSM 2926]
          Length = 353

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/356 (56%), Positives = 268/356 (75%), Gaps = 12/356 (3%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           I DK KALE A+ QIQ+ +G+G+IM+LG+   +   +E +S+GS+G+D+ALG+GG P+GR
Sbjct: 8   IADKDKALEVAMKQIQKDFGEGSIMKLGANTHM--NVETISTGSIGIDMALGLGGVPRGR 65

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYG ES GKTT+ALH +A++QK GG  AF+DAEHALD  YAR LGVD+  LLISQPD
Sbjct: 66  VVEIYGAESCGKTTVALHIVAEAQKKGGIAAFIDAEHALDPAYARALGVDVDELLISQPD 125

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GEQALEI DMLVRSGAVD+IV+DSVAAL P++EIEG+MG+   G+QARLMS+ALRKLT 
Sbjct: 126 NGEQALEIGDMLVRSGAVDVIVVDSVAALVPKSEIEGEMGDQQMGLQARLMSKALRKLTG 185

Query: 189 SISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           S+++SK  ++FINQ+R KIG   FG   TTTGG ALKFYSSVR++I+R+GS+K  D++ G
Sbjct: 186 SLNKSKTTMIFINQIREKIGGFGFGPQTTTTGGRALKFYSSVRMEIKRIGSVKQGDNVIG 245

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+T +K+ KNK+A PFK+ +F IMYG+GIS  GE++D+ +   IV KSGAWFS+   RLG
Sbjct: 246 NETSIKITKNKIAPPFKEAKFQIMYGKGISRAGEILDMAIDNDIVSKSGAWFSYGDIRLG 305

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           QG+EN K+ L E  ++   IES L +         +  P     + A+ +DT++ E
Sbjct: 306 QGKENVKLRLEEEKDLLGQIESDLNK---------ILFPEAEVSEKAENEDTESKE 352


>gi|323341789|ref|ZP_08082022.1| recombination protein A [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464214|gb|EFY09407.1| recombination protein A [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 345

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 189/327 (57%), Positives = 262/327 (80%), Gaps = 2/327 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+   K K L+ A+ QI++ +GKG+IM+LG + ++   I+ +SSGSL LD ALGIGG+PK
Sbjct: 5   MDNAKKDKVLDDAIKQIEKQFGKGSIMRLGDRAAV--DIDAISSGSLSLDAALGIGGYPK 62

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTTLALH IA+ QK GG  AF+DAE+A+D IYA+ LGV++ +L++SQ
Sbjct: 63  GRIIEIYGPESSGKTTLALHAIAEVQKAGGKAAFIDAENAIDPIYAQNLGVNIDDLILSQ 122

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+GEQ LEI D+LVRSGAVD+IV+DSVAAL P+AE++G+MG++  G+QAR+MS+A+RKL
Sbjct: 123 PDSGEQGLEIVDVLVRSGAVDLIVVDSVAALVPQAELDGEMGDAQVGLQARMMSKAMRKL 182

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           +  ++R +C  +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLDIRR   IK    I 
Sbjct: 183 SGGMNRGECTAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDIRRSEQIKQGTDIV 242

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+  +KVVKNK+A PF+  + +I+YG+GIS+ GE+IDLGV+   ++KSG+W+S+K +++
Sbjct: 243 GNKANIKVVKNKVAPPFRATQVEIIYGKGISYIGEVIDLGVQYDFINKSGSWYSYKDEKI 302

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333
           GQGRE  + FL +N +I E I + +R+
Sbjct: 303 GQGREAVRSFLEDNPKITEEIAAQIRE 329


>gi|33241165|ref|NP_876107.1| recombinase A [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|60393014|sp|Q7V9V8|RECA_PROMA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|33238695|gb|AAQ00760.1| RecA recombinase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 379

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 192/323 (59%), Positives = 254/323 (78%), Gaps = 3/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL   L QI+R +GKG+IM+LG    +   +E +S+G+L LD+ALG GG+PKGR+V
Sbjct: 24  ERDKALSLVLGQIERNFGKGSIMRLGDASKMR--VETISTGALTLDLALG-GGYPKGRVV 80

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL LH IA+ QK GG  AFVDAEHALD +YA  LGVD++NLL+SQPDTG
Sbjct: 81  EVYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTG 140

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D L+RS AVD++V+DSVAALTPR+EIEG+MG+   G QARLMSQA+RK+T +I
Sbjct: 141 EMALEIVDQLIRSSAVDLVVVDSVAALTPRSEIEGEMGDHAVGSQARLMSQAMRKITGNI 200

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K      G + 
Sbjct: 201 GKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRA 260

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV KNK+A PF+  EFDI++G+GIS  G L+D+  + +IV + GAW+S++G  +GQGR
Sbjct: 261 KVKVAKNKVAPPFRIAEFDILFGKGISTLGCLLDMAEETNIVTRKGAWYSYEGDNIGQGR 320

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           +N+  +L EN E  E IE L+RQ
Sbjct: 321 DNTITWLEENSEAKEKIEKLVRQ 343


>gi|325145705|gb|ADY86122.1| RecA [Burkholderia sp. C-30.1]
          Length = 338

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/327 (62%), Positives = 250/327 (76%), Gaps = 1/327 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEI
Sbjct: 1   SKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSG++D+IVIDSVAAL P+AEIE                            
Sbjct: 120 ALEITDALVRSGSIDMIVIDSVAALVPKAEIEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 179

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
                   NQ+RMK GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRV
Sbjct: 180 XXXXXXXXNQIRMKXGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N
Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299

Query: 313 SKIFLRENIEIAENIESLLRQNAGLVA 339
           ++ FLREN EIA  IE+ +R++ G+ A
Sbjct: 300 AREFLRENPEIAREIENRIRESLGVAA 326


>gi|116072570|ref|ZP_01469836.1| recombinase A [Synechococcus sp. BL107]
 gi|116064457|gb|EAU70217.1| recombinase A [Synechococcus sp. BL107]
          Length = 376

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/323 (60%), Positives = 254/323 (78%), Gaps = 3/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL   L QI+R +GKG+IM+LG    +   +E +S+G+L LD+ALG GG+PKGR+V
Sbjct: 19  ERDKALNLVLGQIERNFGKGSIMRLGDASRMR--VETISTGALTLDLALG-GGYPKGRVV 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG  AFVDAEHALD  YA  LGVD++NLL+SQPDTG
Sbjct: 76  EIYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPHYAASLGVDVENLLVSQPDTG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D LVRS AVDI+VIDSVAALTPR+EIEG+MG+   G QARLMSQA+RK+T +I
Sbjct: 136 EMALEIVDQLVRSAAVDIVVIDSVAALTPRSEIEGEMGDVSVGSQARLMSQAMRKITGNI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C ++F+NQ+R+KIGVM+G+PETTTGGNALKFY+SVRLDIRR+ ++K      G + 
Sbjct: 196 GKSGCTVIFLNQLRLKIGVMYGNPETTTGGNALKFYASVRLDIRRIQTLKKGTEEFGIRA 255

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV KNK+A PF+  EFDI++G GIS  G L+DL  +  +V + GAW+S++G  +GQGR
Sbjct: 256 KVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVVRKGAWYSYEGDNIGQGR 315

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           +N+ +++ +N E A  IE+L+RQ
Sbjct: 316 DNTIVWMEQNPEAATTIETLVRQ 338


>gi|134299770|ref|YP_001113266.1| recA protein [Desulfotomaculum reducens MI-1]
 gi|134052470|gb|ABO50441.1| RecA protein [Desulfotomaculum reducens MI-1]
          Length = 347

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/347 (61%), Positives = 275/347 (79%), Gaps = 4/347 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KALE AL+ I++ +GKG+IM+LG    +   IE +SSG+L LDIALG+GG P+GR+V
Sbjct: 3   DKIKALEIALANIEKQFGKGSIMKLGDSTKL--NIEAISSGALSLDIALGVGGLPRGRVV 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA++QK  G  AF+DAEHALD +YAR LGVD +NLL+SQPDTG
Sbjct: 61  EIYGPESSGKTTVALHVIAEAQKQNGMAAFIDAEHALDPVYARNLGVDTENLLVSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVD++V+DSVAAL PRAEIEGDMG++  G+QARLMSQALRKLT  +
Sbjct: 121 EQALEICEALVRSGAVDVVVVDSVAALVPRAEIEGDMGDTHVGLQARLMSQALRKLTGIV 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+SK I+VFINQ+R K+GV++GSPE TTGG ALKFY+SVR+++R+  +IK    I G++T
Sbjct: 181 SKSKTIVVFINQIREKVGVIYGSPEVTTGGRALKFYASVRMEVRKQENIKQGTDIVGSRT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFKQ EFDIMYG GIS  G ++D+  +  IV+KSGAW+S+  +RLGQGR
Sbjct: 241 RVKIVKNKVAPPFKQAEFDIMYGTGISKEGSILDVATELKIVNKSGAWYSYGDERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           EN+K   +E  E+ + I++ +R+   L +DSL     I T D +++D
Sbjct: 301 ENAKELFKERPELCQEIQNKVREKLSL-SDSLPSVEGIPT-DQSEED 345


>gi|71725927|gb|AAZ39081.1| homologous recombination protein [Exiguobacterium sibiricum]
          Length = 289

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/291 (66%), Positives = 243/291 (83%), Gaps = 2/291 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG   S  + + V+SSGS+ LDIALG GG+P+GR++E+YGPESSGKTT+
Sbjct: 1   EKQFGKGSIMKLGE--SPDQRVSVISSGSITLDIALGAGGYPRGRVIEVYGPESSGKTTV 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           +LH IA+ QK GG  AF+DAEHALD  YA KLGV++  LL+SQPDTGEQALEI + LVRS
Sbjct: 59  SLHAIAEVQKQGGQAAFIDAEHALDPAYASKLGVNIDELLLSQPDTGEQALEIAEALVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVDI+V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ + ++SK I++FINQ+
Sbjct: 119 GAVDILVVDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLSGATNKSKTIVIFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           R KIGVMFG+PETT GG ALKFYSSVRL++RR  ++K+   I GN+T++KVVKNK+A PF
Sbjct: 179 REKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKNGTDIVGNRTKLKVVKNKIAPPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           KQ E DIMYG+GIS FGELIDLG    IV KSGAW+S+  +RLGQGRENSK
Sbjct: 239 KQAEVDIMYGQGISKFGELIDLGTDLDIVQKSGAWYSYNSERLGQGRENSK 289


>gi|71725933|gb|AAZ39084.1| homologous recombination protein [Exiguobacterium antarcticum]
          Length = 289

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 192/291 (65%), Positives = 241/291 (82%), Gaps = 2/291 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG      + + V+SSGS+ LDIALG GG+P+GR++E+YGPESSGKTT+
Sbjct: 1   EKQFGKGSIMRLGENAD--QRVSVISSGSITLDIALGAGGYPRGRVIEVYGPESSGKTTV 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALH IA+ QK GG  AF+DAEHALD  YA KLGV++  LL+SQPDTGEQALE+ + LVRS
Sbjct: 59  ALHAIAEVQKQGGQAAFIDAEHALDPAYASKLGVNIDELLLSQPDTGEQALEVAEALVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GA DI+V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ + ++SK I++FINQ+
Sbjct: 119 GAADILVVDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLSGATNKSKTIVIFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           R KIGVMFG+PETT GG ALKFYSSVRL++RR  ++K+   I GN+T++KVVKNK+A PF
Sbjct: 179 REKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKNGTDIVGNRTKLKVVKNKIAPPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           KQ E DIMYG+GIS FGELIDLG    IV KSGAW+S+  +RLGQGRENSK
Sbjct: 239 KQAEVDIMYGQGISKFGELIDLGTDLDIVQKSGAWYSYNSERLGQGRENSK 289


>gi|258647628|ref|ZP_05735097.1| protein RecA [Prevotella tannerae ATCC 51259]
 gi|260852441|gb|EEX72310.1| protein RecA [Prevotella tannerae ATCC 51259]
          Length = 342

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/322 (63%), Positives = 260/322 (80%), Gaps = 2/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AA+++I++ +GKG+IM+L  +    E IEV+ +GS+ L+ ALG+GG+PKGRI+
Sbjct: 14  EKLKALQAAMAKIEKDFGKGSIMKLDDEE--VEDIEVIPTGSIALNDALGVGGYPKGRII 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPE SGKTTLA+H IA++Q+ GG  AF+DAEHA D  YA KLGV+L  LLISQPD G
Sbjct: 72  EIYGPEGSGKTTLAIHAIAEAQRRGGIAAFIDAEHAFDRFYAEKLGVNLSELLISQPDNG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L+RS A+DIIVIDSVAALTP+AEIEGDMG++  G+QARLMSQALRKLTS+I
Sbjct: 132 EQALEIADQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTSTI 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++    +FINQ+R KIG+ FG+PETTTGGNALKFYSSVRLDIR+  S+KD D + GN  
Sbjct: 192 SKTNTTCIFINQLREKIGITFGNPETTTGGNALKFYSSVRLDIRKATSLKDGDHVYGNLV 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++VEF+I +GEGIS  GE++DLGV+  I+ KSG+WFS+   RL QGR
Sbjct: 252 RVKVVKNKVAPPFRKVEFEITFGEGISHIGEIVDLGVELEIIKKSGSWFSYGETRLCQGR 311

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           +  K  L +NIE+ E IE  ++
Sbjct: 312 DALKRLLADNIELTEEIEEQIK 333


>gi|328949866|ref|YP_004367201.1| Protein recA [Marinithermus hydrothermalis DSM 14884]
 gi|328450190|gb|AEB11091.1| Protein recA [Marinithermus hydrothermalis DSM 14884]
          Length = 349

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/338 (57%), Positives = 262/338 (77%), Gaps = 3/338 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KALE+AL QI+R +GKG+IM+LG   +  + ++V+ +GSL LD+ALG+GG P+GRI+
Sbjct: 7   ERKKALESALKQIERQFGKGSIMRLGE--APRQQVDVIPTGSLALDLALGVGGIPRGRII 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPES GKTTLALH IAQ+QK GG  AFVDAEHALD +YAR LGV++ +LL+SQPDTG
Sbjct: 65  EVYGPESGGKTTLALHIIAQAQKRGGVAAFVDAEHALDPVYARSLGVNVDDLLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI ++LVRSGAVD+IV+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKLT+ +
Sbjct: 125 EQALEIVELLVRSGAVDVIVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTAVL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQ 249
           ++S    +FINQ+R K+GVM+G+PETT GG ALKFY+SVRLD+RR G  IK  +   GN+
Sbjct: 185 AKSNTAAIFINQIREKVGVMYGNPETTPGGRALKFYASVRLDVRRSGQPIKQGNEAIGNR 244

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            RVKV KNK+A PF++ E ++ +G+GI    +L+ + V   ++ K+G+W S+   RLGQG
Sbjct: 245 VRVKVTKNKLAPPFREAEIELYFGKGIDPMADLVTVAVAQEVIQKAGSWLSYGDTRLGQG 304

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           +E +  FLRE+ E+AE I + + + A   A  + +E A
Sbjct: 305 KERAAEFLREHPELAEEIRARVLEAARSAAPQVPREAA 342


>gi|325145695|gb|ADY86117.1| RecA [Burkholderia sp. T-22.5]
          Length = 338

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/327 (62%), Positives = 250/327 (76%), Gaps = 1/327 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEI
Sbjct: 1   SKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL L  IA+ QK GG  AF+DAEHALD  YA KLGV++  LLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLTLQVIAELQKLGGXAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSG++D+IVIDSVAAL P+AEIE                            
Sbjct: 120 ALEITDALVRSGSIDMIVIDSVAALVPKAEIEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 179

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
                   NQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRV
Sbjct: 180 XXXXXXXXNQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N
Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299

Query: 313 SKIFLRENIEIAENIESLLRQNAGLVA 339
           ++ FLREN EIA  IE+ +R++ G+ A
Sbjct: 300 AREFLRENPEIAREIENRIRESLGVAA 326


>gi|148879027|emb|CAM07029.1| RecA protein [Mycobacterium sp. MHSD11]
          Length = 289

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 188/280 (67%), Positives = 237/280 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAE
Sbjct: 9   ISVIPTGSISLDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 68

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA+KLGVD  +LL+SQPDTGEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIE
Sbjct: 69  HALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDILVIDSVAALVPRAEIE 128

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFGSPETTTGG ALK
Sbjct: 129 GEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALK 188

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLD+RR+ ++KD     GN+TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID
Sbjct: 189 FYASVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGQGISREGSLID 248

Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           +GV+   + KSG+WF+++G++LGQG+EN++ FL EN+++A
Sbjct: 249 MGVEHGFIRKSGSWFTYEGEQLGQGKENARKFLLENVDVA 288


>gi|15212460|gb|AAK92001.1| RecA [Bordetella parapertussis]
 gi|15212462|gb|AAK92002.1| RecA [Bordetella parapertussis]
          Length = 282

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/262 (74%), Positives = 230/262 (87%), Gaps = 1/262 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           SQI++ +GKG+IM+ G    +   I+VVS+GSLGLDIALG+GG P+GR++E+YGPESSGK
Sbjct: 22  SQIEKQFGKGSIMRYGDN-EVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEVYGPESSGK 80

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA+ QK GGTCAFVDAEHALD  YA KLGV+L +LLISQPDTGEQALEITD L
Sbjct: 81  TTLTLQVIAEMQKLGGTCAFVDAEHALDVQYASKLGVNLTDLLISQPDTGEQALEITDAL 140

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT++I R+ C+++FI
Sbjct: 141 VRSGSVDLIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFI 200

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK  D + GN+TRVKVVKNK+A
Sbjct: 201 NQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKKGDEVVGNETRVKVVKNKVA 260

Query: 261 SPFKQVEFDIMYGEGISFFGEL 282
            PFKQ EFDIMYG GIS  GE+
Sbjct: 261 PPFKQAEFDIMYGSGISREGEI 282


>gi|2500091|sp|Q59629|RECA_NEIPH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|1354927|gb|AAB49199.1| RecA [Neisseria pharyngis subsp. flava]
          Length = 274

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 192/276 (69%), Positives = 235/276 (85%), Gaps = 3/276 (1%)

Query: 31  AIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           +IM++ GSQ    E ++V+S+GSLG+D+ALG+GG P+GR+VEI+GPESSGKTTL L  IA
Sbjct: 1   SIMKMDGSQQE--ENLDVISTGSLGVDLALGVGGLPRGRVVEIFGPESSGKTTLCLEAIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           Q QKTGG CAF+DAEHA D +YARKLGV ++ L +SQPDTGEQALEI D LVRSG VD++
Sbjct: 59  QCQKTGGICAFIDAEHAFDPVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGVDMV 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  I R+  ++VFINQ+RMKIGV
Sbjct: 119 VVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGHIKRTNTLVVFINQIRMKIGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFGSPETTTGGNALKFY+SVRLDIRR G IK  D + GN+T+VKV+KNK+A PF+Q EFD
Sbjct: 179 MFGSPETTTGGNALKFYASVRLDIRRTGQIKKGDDVIGNETKVKVIKNKVAPPFRQAEFD 238

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           I+YGEG+S+ GELIDLGVK  IV+KSGAW+S+ G +
Sbjct: 239 ILYGEGVSWEGELIDLGVKYDIVEKSGAWYSYNGSK 274


>gi|139439622|ref|ZP_01773035.1| Hypothetical protein COLAER_02062 [Collinsella aerofaciens ATCC
           25986]
 gi|133774963|gb|EBA38783.1| Hypothetical protein COLAER_02062 [Collinsella aerofaciens ATCC
           25986]
          Length = 360

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/320 (60%), Positives = 250/320 (78%), Gaps = 1/320 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           ++I++ +G+G+IM+ G  G   E +E + +G+L LD ALGIGG P+GRIVEIYGPESSGK
Sbjct: 7   AEIEKKFGQGSIMRYGDGGPELE-VEAIPTGALALDAALGIGGVPRGRIVEIYGPESSGK 65

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL+L  +A++Q  GG  AF+DAEHALD  YA ++GVD+  +LISQPDTGEQALEI DML
Sbjct: 66  TTLSLEILAEAQAMGGVVAFIDAEHALDPTYAARIGVDIDEVLISQPDTGEQALEIVDML 125

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGA+D IV+DSVAALTPRAEIEG++G++  G+QARLMSQALRKL  S+S+S    +FI
Sbjct: 126 VRSGAIDAIVVDSVAALTPRAEIEGEIGDTTVGLQARLMSQALRKLAGSLSKSNTTCIFI 185

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+R KIGVMFG+PETTTGG ALKF+SSVR+DIRR+ SIK KD + GN+ R KVVKNK+A
Sbjct: 186 NQLREKIGVMFGNPETTTGGRALKFFSSVRIDIRRIDSIKLKDEVIGNRVRAKVVKNKVA 245

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
           +PF+  EFDIMYG GIS  G ++D+ V+  I  K G+WF++   +LG GRE +K FLRE+
Sbjct: 246 APFRSAEFDIMYGTGISKEGSILDMAVECGICKKMGSWFAYGEDKLGNGREAAKAFLREH 305

Query: 321 IEIAENIESLLRQNAGLVAD 340
            + A+ IE  +R   GL  D
Sbjct: 306 PDCADEIEHKVRLACGLEFD 325


>gi|291458041|ref|ZP_06597431.1| protein RecA [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419373|gb|EFE93092.1| protein RecA [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 372

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/331 (61%), Positives = 267/331 (80%), Gaps = 2/331 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+ AL++I++ +GKG++M+LG +  + + IE V +G+L LDIALG GGFP+GRI+
Sbjct: 21  EKLKALDVALTKIEKDFGKGSVMKLG-ESRVNKDIETVPTGALSLDIALGAGGFPRGRII 79

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH +A+ QK GG   FVDAEHALD  YA+++GVD+ NL ISQPD+G
Sbjct: 80  EIYGPESSGKTTLALHAVAEVQKRGGIAGFVDAEHALDPRYAKEIGVDIDNLYISQPDSG 139

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + ++RSGA+DI+V+DSVAAL P+AEI+G+MG+S  G+QARLMSQALRKLTS I
Sbjct: 140 EQALEIAETMIRSGAIDILVVDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLTSII 199

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQ 249
           SRS  IL+FINQ+R K+GVMFGSPETTTGG ALKFY+++R+DIR+   IK      +GN+
Sbjct: 200 SRSNAILIFINQLREKVGVMFGSPETTTGGRALKFYATIRIDIRKGEPIKSASGEPSGNR 259

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PFKQ EFDI +G GIS  G+++DL V   IVDKSGAWF+++G+++GQG
Sbjct: 260 VKVKVVKNKIAPPFKQCEFDISFGSGISREGDVLDLAVNEDIVDKSGAWFAYEGEKIGQG 319

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           REN+K +L++N  +   IE  +R+  GL  D
Sbjct: 320 RENAKEYLKKNPRVMAEIEGKVREKFGLKPD 350


>gi|162424787|gb|ABX90071.1| RecA protein [Burkholderia sabiae]
          Length = 266

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/267 (72%), Positives = 234/267 (87%), Gaps = 1/267 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G++M+LG QG   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A
Sbjct: 1   GSVMRLG-QGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA+KLGV++  LL+S PDTGEQALEI D LVRSG++D+I
Sbjct: 60  EMQKLGGTAAFIDAEHALDIQYAQKLGVNVSELLVSHPDTGEQALEIADALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSG 296
           I+YGEGIS  GE+IDLGV+A IVDK+G
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAG 266


>gi|325145703|gb|ADY86121.1| RecA [Burkholderia sp. C-20.3]
          Length = 338

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/327 (62%), Positives = 250/327 (76%), Gaps = 1/327 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEI
Sbjct: 1   SKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSG++D+IVIDSVAAL P+AEIE                            
Sbjct: 120 ALEITDALVRSGSIDMIVIDSVAALVPKAEIEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 179

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
                   N +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRV
Sbjct: 180 XXXXXXXXNXIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N
Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299

Query: 313 SKIFLRENIEIAENIESLLRQNAGLVA 339
           ++ FLREN EIA  IE+ +R++ G+ A
Sbjct: 300 AREFLRENPEIAREIENRIRESLGVAA 326


>gi|225027004|ref|ZP_03716196.1| hypothetical protein EUBHAL_01260 [Eubacterium hallii DSM 3353]
 gi|224955689|gb|EEG36898.1| hypothetical protein EUBHAL_01260 [Eubacterium hallii DSM 3353]
          Length = 381

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/322 (60%), Positives = 258/322 (80%), Gaps = 1/322 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ YGKG+IM+LG  G+  + IE + +GS+ LD+ALG+GG P+GRI+EIYGPESSGKTT
Sbjct: 35  IEKNYGKGSIMKLGDSGANID-IEAIPTGSISLDVALGVGGVPRGRIIEIYGPESSGKTT 93

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA++QK  G   F+DAEHALD  YA+K+GVD+ NL ISQPD GEQALEI + ++R
Sbjct: 94  VALHMIAEAQKRNGIAGFIDAEHALDPQYAKKIGVDIDNLYISQPDNGEQALEIAETMIR 153

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGA+DI+++DSVAAL P+AEIEGDM +   G+ ARLMS+A+RKLT  I+RS C +VFINQ
Sbjct: 154 SGALDIVIVDSVAALVPKAEIEGDMDDQQVGLHARLMSKAMRKLTGVINRSNCAVVFINQ 213

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +R K+G+MFG+PE TTGG ALKFYSSVR+D+RRV +IK    I GN T+VKVVKNK+A P
Sbjct: 214 LREKVGIMFGNPEVTTGGRALKFYSSVRMDVRRVEAIKQGGEIIGNHTKVKVVKNKVAPP 273

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FK+ EFDIM+G+GIS  G+LIDL VK   V KSGAW+++KG+++GQGREN+K FLRE+ E
Sbjct: 274 FKEAEFDIMFGQGISREGDLIDLAVKVDAVQKSGAWYAYKGEKIGQGRENAKTFLREHPE 333

Query: 323 IAENIESLLRQNAGLVADSLLQ 344
           I   +E  +R+   L  D++++
Sbjct: 334 IMAEVEVQVREYYNLPTDTVVE 355


>gi|325145693|gb|ADY86116.1| RecA [Burkholderia sp. T-17.2]
          Length = 338

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/327 (62%), Positives = 249/327 (76%), Gaps = 1/327 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEI
Sbjct: 1   SKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSG++D+ VIDSVAAL P+AEIE                            
Sbjct: 120 ALEITDALVRSGSIDMXVIDSVAALVPKAEIEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 179

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
                   NQ+RMKIGVMFG PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRV
Sbjct: 180 XXXXXXXXNQIRMKIGVMFGXPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N
Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299

Query: 313 SKIFLRENIEIAENIESLLRQNAGLVA 339
           ++ FLREN EIA  IE+ +R++ G+ A
Sbjct: 300 AREFLRENPEIAREIENRIRESLGVAA 326


>gi|60393008|sp|Q45791|RECA_BACTN RecName: Full=Protein RecA; AltName: Full=Recombinase A
          Length = 330

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/321 (61%), Positives = 262/321 (81%), Gaps = 2/321 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+A + +I++ +GKG+IM++G      E +EV+ +GS+ L++ALG+GG+P+GRI+
Sbjct: 5   EKLKALQATMEKIEKNFGKGSIMKMGDDS--VEQVEVIPTGSIALNVALGVGGYPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD G
Sbjct: 63  EIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDNG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++  G+QARLMSQALRKLT ++
Sbjct: 123 EQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTGTV 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+++   +FINQ+R KIGVMFG+PETTTGGNALKFY+SVR+DIR    IKD + + G  T
Sbjct: 183 SKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRIDIRGSQPIKDGEEVLGKLT 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG +  I+ KSG+W+S+   +LGQGR
Sbjct: 243 KVKVVKNKVAPPFRKAEFDIMFGEGISHSGEIIDLGAELGIIKKSGSWYSYNDTKLGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLL 331
           + +K+ +++N E+AE +E L+
Sbjct: 303 DAAKVCIKDNPELAEELEGLI 323


>gi|325145701|gb|ADY86120.1| RecA [Burkholderia sp. C-19.2]
          Length = 338

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/327 (62%), Positives = 249/327 (76%), Gaps = 1/327 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEI
Sbjct: 1   SKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSG++D  VIDSVAAL P+AEIE                            
Sbjct: 120 ALEITDALVRSGSIDXXVIDSVAALVPKAEIEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 179

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
                   NQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRV
Sbjct: 180 XXXXXXXXNQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N
Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299

Query: 313 SKIFLRENIEIAENIESLLRQNAGLVA 339
           ++ FLREN EIA  IE+ +R++ G+ A
Sbjct: 300 AREFLRENPEIAREIENRIRESLGVAA 326


>gi|148878989|emb|CAM07010.1| RecA protein [Mycobacterium sp. MG3]
          Length = 293

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/292 (65%), Positives = 243/292 (83%), Gaps = 2/292 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q
Sbjct: 1   MRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
             GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTGEQALEI DMLVRSGA+ ++VID
Sbjct: 59  AAGGIAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAISLLVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFG
Sbjct: 119 SVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           SPETTTGG ALKFYSSVRLD+RR+ ++KD     GN+TRVKVVKNK++ PFKQ EFDI+Y
Sbjct: 179 SPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILY 238

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           G+GIS  G LID+GV+   + KSG+WF+++G++LGQG+EN++ FL EN+++A
Sbjct: 239 GKGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGKENARNFLLENVDVA 290


>gi|159904222|ref|YP_001551566.1| recombinase A [Prochlorococcus marinus str. MIT 9211]
 gi|238687121|sp|A9BCQ0|RECA_PROM4 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|159889398|gb|ABX09612.1| RecA bacterial DNA recombination protein [Prochlorococcus marinus
           str. MIT 9211]
          Length = 367

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 191/323 (59%), Positives = 255/323 (78%), Gaps = 3/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL   L QI+R +GKG+IM+LG    +   +E +S+G+L LD+ALG GG+PKGR+V
Sbjct: 24  ERDKALNLVLGQIERNFGKGSIMRLGDASRMR--VETISTGALTLDLALG-GGYPKGRVV 80

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL LH IA+ Q+ GG  AFVDAEHALD +YA  LGVD++NLL+SQPDTG
Sbjct: 81  EVYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTG 140

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D L+RS AV+++V+DSVAALTPRAEIEG+MG+ + G QARLMSQA+RK+T +I
Sbjct: 141 EMALEIVDQLIRSAAVELVVVDSVAALTPRAEIEGEMGDHVIGSQARLMSQAMRKITGNI 200

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K      G + 
Sbjct: 201 GKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTDEYGIRA 260

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV KNK+A PF+  EFDI++G+GIS  G L+DL  + +IV + GAW+S++G  +GQGR
Sbjct: 261 KVKVAKNKVAPPFRIAEFDILFGKGISTIGCLLDLAEETNIVARKGAWYSYEGDNIGQGR 320

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           +N+  +L +N E  E IE L+RQ
Sbjct: 321 DNTITWLEQNTEAKEKIEKLVRQ 343


>gi|197941161|gb|ACH78294.1| RecA [Vibrio gallaecicus]
          Length = 277

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 191/277 (68%), Positives = 235/277 (84%), Gaps = 2/277 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LD+ALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 3   FGKGSIMRLGDNRTM--DVETISTGSLSLDVALGAGGLPMGRIVEVYGPESSGKTTLTLE 60

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 61  LIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 120

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 121 DVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMK 180

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ 
Sbjct: 181 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQA 240

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
           E  I+YG+G +  GELIDLGVK  +VDK+GAW+S+ G
Sbjct: 241 ETQILYGQGFNREGELIDLGVKNKLVDKAGAWYSYNG 277


>gi|16332317|ref|NP_443045.1| recombinase A [Synechocystis sp. PCC 6803]
 gi|2500096|sp|P74737|RECA_SYNY3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|1653947|dbj|BAA18857.1| RecA gene product [Synechocystis sp. PCC 6803]
          Length = 354

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/354 (56%), Positives = 264/354 (74%), Gaps = 8/354 (2%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           NI D+ KAL AAL+QI+R +GKGAIM+LG    +   +E +S+G+L LD+ALG GG PKG
Sbjct: 5   NISDREKALNAALAQIERSFGKGAIMRLGDATQMR--VETISTGALTLDLALG-GGLPKG 61

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTLALH +A +Q+ GG  AFVDAEHALD +Y++ LGVD+ NLL++QP
Sbjct: 62  RIVEIYGPESSGKTTLALHAVAATQQAGGVAAFVDAEHALDPVYSKALGVDIDNLLVAQP 121

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GE ALEI D LVRS AVDIIV+DSVAAL PRAEIEG+MG++  G QARLMS+A+RK+ 
Sbjct: 122 DNGESALEIVDQLVRSTAVDIIVVDSVAALVPRAEIEGEMGDTSVGSQARLMSKAMRKIA 181

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSIT 246
            +I RS C+++F+NQ+R KIGV +GSPE TTGGNALKFY+SVRLDIRR+ ++K   +   
Sbjct: 182 GNIGRSGCLVIFLNQLRQKIGVTYGSPEVTTGGNALKFYASVRLDIRRIQTLKKGTEGEY 241

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G + +VKV KNK+A PF+  EFDI++G+GIS  G  IDL  K  ++ + GAW+S+ G+ +
Sbjct: 242 GIRAKVKVAKNKVAPPFRIAEFDIIFGQGISRMGCTIDLAEKCEVITRKGAWYSYNGENI 301

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
            QGR+N+  +L EN EIA  I+  +R+   LV         + T+D A++   D
Sbjct: 302 AQGRDNAMKYLEENPEIAATIDQQVREKLSLVNAVF----PVETEDGAEEQGED 351


>gi|58415580|emb|CAH57204.1| recA protein [Vibrio navarrensis]
          Length = 265

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/267 (73%), Positives = 229/267 (85%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           AIM+LG   ++   IE +S+GSL +DIALGIGG P GR+VEIYGPESSGKTTL L  IA+
Sbjct: 1   AIMRLGDNQAM--DIEAISTGSLSIDIALGIGGLPCGRVVEIYGPESSGKTTLTLQVIAE 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAFVDAEHALD +YA KLGV + +LL+SQPDTGEQALEI DMLVRSGAVD+++
Sbjct: 59  AQKKGKTCAFVDAEHALDPVYAEKLGVSIDDLLVSQPDTGEQALEICDMLVRSGAVDVVI 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT +I RS  + +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTGNIKRSNTLCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFYSSVRLDIRR+G++KD D + GN+TRVKVVKNK+A PFKQ EF I
Sbjct: 179 FGNPETTTGGNALKFYSSVRLDIRRIGAVKDGDEVVGNETRVKVVKNKVAPPFKQAEFQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYGEGIS   ELIDLGVK  +VDK+GA
Sbjct: 239 MYGEGISKEAELIDLGVKQKLVDKAGA 265


>gi|171778531|ref|ZP_02919658.1| hypothetical protein STRINF_00510 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282754|gb|EDT48178.1| hypothetical protein STRINF_00510 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 392

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 200/353 (56%), Positives = 270/353 (76%), Gaps = 13/353 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 26  ERKKALDDALKLIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 83

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 84  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 143

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G++  G+QAR+MSQA+RKL++SI
Sbjct: 144 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDNHVGLQARMMSQAMRKLSASI 203

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+R    IK     KDS  
Sbjct: 204 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRGNTQIKGTGDQKDSNI 263

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK  E +IMYGEGIS  GELI +     I+ K+GAWFS+ G+++
Sbjct: 264 GKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTGELIKIASDLDIIKKAGAWFSYNGEKI 323

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADS-------LLQEPAINTKD 352
           GQG EN+K +L ++ EI + I+  +R + GLV ++       L +E A+ T++
Sbjct: 324 GQGSENAKKYLADHPEIFDEIDHKVRVHYGLVEETEDEKAAKLSEESAVTTEN 376


>gi|148878999|emb|CAM07015.1| RecA protein [Mycobacterium sp. MG8]
          Length = 291

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/292 (65%), Positives = 243/292 (83%), Gaps = 2/292 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q
Sbjct: 1   MRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
             GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTGEQALEI DMLVRSGA+ ++VID
Sbjct: 59  AAGGIAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAISLLVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFG
Sbjct: 119 SVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           SPETTTGG ALKFYSSVRLD+RR+ ++KD     GN+TRVKVVKNK++ PFKQ EFDI+Y
Sbjct: 179 SPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILY 238

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           G+GIS  G LID+GV+   + KSG+WF+++G++LGQG+EN++ FL EN+++A
Sbjct: 239 GKGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGKENARNFLLENVDVA 290


>gi|166079842|gb|ABY81643.1| recombinase A [Staphylococcus simulans]
          Length = 319

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/314 (62%), Positives = 246/314 (78%), Gaps = 2/314 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKGA+M+LG   +         S +L  D ALG+GG+PKGRIVEIYGPESSGKTT+
Sbjct: 1   EKSFGKGAVMKLGDNKARRVSSVSSGSVTL--DNALGVGGYPKGRIVEIYGPESSGKTTV 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALH IA+ QK GG  AF+DAEHALD +YA  LGVD+ NL +SQPD GEQ LEI +  VRS
Sbjct: 59  ALHAIAEVQKQGGIAAFIDAEHALDPVYAEALGVDINNLYLSQPDHGEQGLEIAEAFVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVDIIV+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +IS+S C  +FINQ+
Sbjct: 119 GAVDIIVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAISKSNCTAIFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T++KVVKNK+A PF
Sbjct: 179 REKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRTKIKVVKNKVAPPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           +  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G R+GQG+EN K +L+E+ ++
Sbjct: 239 RVAEVDIMYGQGISKEGELIDLGVEHDIVDKSGAWYSYNGDRMGQGKENVKNYLKEHPDV 298

Query: 324 AENIESLLRQNAGL 337
             +I+  LRQ  G+
Sbjct: 299 KADIDQKLRQKLGI 312


>gi|158339744|ref|YP_001520751.1| recombinase A [Acaryochloris marina MBIC11017]
 gi|158309985|gb|ABW31601.1| protein RecA [Acaryochloris marina MBIC11017]
          Length = 357

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/341 (56%), Positives = 259/341 (75%), Gaps = 5/341 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M  + EM   +K KAL+  +  +++ +GKGAIM+LG    +   IE +S+G+L LD+ALG
Sbjct: 1   MSAKTEMT--EKQKALDLVMKNVEKTFGKGAIMRLGDAARM--QIETISTGALPLDLALG 56

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG PKGR++E+YGPESSGKTT+ALH IA+ QK+GG  AFVDAEHALD +YA  LGVD+ 
Sbjct: 57  -GGLPKGRVIEVYGPESSGKTTVALHAIAEIQKSGGVAAFVDAEHALDPVYAAALGVDVS 115

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+ QPD+GE ALE+ D LVRS AVD++V+DSVAALTPRAEIEGDMG+S  G+QARLMS
Sbjct: 116 ELLVCQPDSGEMALEVVDQLVRSSAVDLVVVDSVAALTPRAEIEGDMGDSHMGLQARLMS 175

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRK+TS+I +S   ++F+NQ+R KIGV +GSPE TTGGNALKFY+SVRLDIRRV ++K
Sbjct: 176 QALRKITSNICKSGSTVIFLNQLRQKIGVTYGSPEVTTGGNALKFYASVRLDIRRVQTLK 235

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
               + G + +VKV KNK+A PFK  EFDI++G+GIS  G L+D+  +A ++ + GAW+S
Sbjct: 236 KGTEMYGIRAKVKVAKNKVAPPFKLAEFDILFGQGISTIGCLVDMAAEAEVIVRKGAWYS 295

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           ++G  +GQGREN+  +  ++ E A+ +E  +RQ   L AD 
Sbjct: 296 YEGDNIGQGRENTIQYFADHPEFAQAVEQQVRQRLALGADC 336


>gi|301301366|ref|ZP_07207508.1| RecA protein [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851026|gb|EFK78768.1| RecA protein [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 381

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 200/357 (56%), Positives = 269/357 (75%), Gaps = 10/357 (2%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL+AAL +I++ +GKG+IM++G  G +   I  +SSGS+ +D  LG+GG+P+GRI+EIY
Sbjct: 18  KALDAALKKIEKKFGKGSIMKMG--GKVDTKISTISSGSIAIDAGLGVGGYPRGRIIEIY 75

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  YA  LGV++  LL+SQPDTGEQ 
Sbjct: 76  GPESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPAYATALGVNIDELLLSQPDTGEQG 135

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI D LV SGA+DIIV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I+++
Sbjct: 136 LEIADALVSSGAIDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGTINKT 195

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
           K + +FINQ+R K+GVMFG+PETT GG ALKFYS+VR+++RR  +IK K  I GN+T++K
Sbjct: 196 KTVAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRMEVRRSEAIKAKSEIIGNRTKIK 255

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
             KNK+A PFK  E DIMYGEGIS  GEL+D+ V+  I+ KSG+WFS+   R+GQGREN+
Sbjct: 256 FAKNKVAPPFKVAEVDIMYGEGISKTGELLDMAVEKDIIHKSGSWFSYGDTRIGQGRENA 315

Query: 314 KIFLRENIEIAENIESLLRQNAGL------VADSLLQEPAINTKDD--ADKDDTDNV 362
           K +L E+ +    I   +R+  G+      V +S  +    +  DD  AD DD++ V
Sbjct: 316 KEYLSEHEDEMNEINIKVREAYGIPDENGNVPESQDKNTTQSAMDDKAADIDDSEEV 372


>gi|257460294|ref|ZP_05625397.1| protein RecA [Campylobacter gracilis RM3268]
 gi|257442359|gb|EEV17499.1| protein RecA [Campylobacter gracilis RM3268]
          Length = 347

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/353 (59%), Positives = 264/353 (74%), Gaps = 15/353 (4%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K K L+AAL  I + +GKG +++LG +    E I+ +S+GS+GLDIALGIGG PKGRI+E
Sbjct: 5   KKKTLDAALKSIDKAFGKGTLVRLGDKQ--VEPIDAISTGSVGLDIALGIGGVPKGRIIE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTL LH IA+ QK GG CAFVDAEHALD  YA  LGVD  NL +SQPD GE
Sbjct: 63  VYGPESSGKTTLTLHIIAECQKAGGICAFVDAEHALDVKYASNLGVDTDNLYVSQPDFGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL+I + L +SGA+D+IV+DSVAALTP+ EIEGDMG+   G+QARLMSQALRKL   + 
Sbjct: 123 QALDIVETLAKSGAIDLIVVDSVAALTPKNEIEGDMGDQHVGLQARLMSQALRKLAGVVH 182

Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +    ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVR+DIR++ ++K  +   GN+ 
Sbjct: 183 KMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRIDIRKIATLKQNEESIGNRA 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PFK  EFDIM+G+GIS  GELID GVK  I+DKSGAWFS+   +LGQGR
Sbjct: 243 KVKVVKNKVAPPFKIAEFDIMFGKGISKVGELIDYGVKLDIIDKSGAWFSYGDTKLGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           EN+KI+L  N  +AE I + +R+  G V  S            AD DD +N++
Sbjct: 303 ENAKIYLENNPAVAEEITAKIREQMGSVNFS------------ADADDEENLQ 343


>gi|290795115|gb|ADD64573.1| RecA recombinase [Enterovibrio norvegicus]
          Length = 265

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/267 (72%), Positives = 231/267 (86%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           AIM+LG   ++   IE VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  +A+
Sbjct: 1   AIMRLGDDRTM--DIETVSTGSLSLDIALGAGGLPFGRIVEIYGPESSGKTTLTLQVVAE 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD +YARKLGVD+ NLL+SQPDTGEQALEI D L RSGAVD+I+
Sbjct: 59  AQKAGKTCAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIADALTRSGAVDVII 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT++I  S  +++FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D I GN TRVKVVKNK+A+PFKQ EF I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEIVGNDTRVKVVKNKIAAPFKQAEFQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYGEGI+ +GELIDLGVK  +V+K+GA
Sbjct: 239 MYGEGINLYGELIDLGVKHKLVEKAGA 265


>gi|166079838|gb|ABY81641.1| recombinase A [Staphylococcus warneri]
          Length = 320

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/314 (62%), Positives = 250/314 (79%), Gaps = 2/314 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKGA+M+LG            SSGS+ LD ALG+GG+PKGRI+EIYGPESSGKTT+
Sbjct: 1   EKSFGKGAVMKLGDNKGRRV--SSTSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTV 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALH IA++QK GG  AF+DAEHALD +YA+ LGVD+ NL +SQPD GEQ LEI +  VRS
Sbjct: 59  ALHAIAETQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +IS+S    +FINQ+
Sbjct: 119 GAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAISKSNTTAIFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T++KVVKNK+A PF
Sbjct: 179 REKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRTKIKVVKNKVAPPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           +  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G+R+GQG+EN K +L+EN +I
Sbjct: 239 RVAEVDIMYGQGISKEGELIDLGVENEIVDKSGAWYSYNGERMGQGKENVKTYLKENPQI 298

Query: 324 AENIESLLRQNAGL 337
            + I+  LR+  G+
Sbjct: 299 KDEIDQKLREKLGI 312


>gi|301105134|ref|XP_002901651.1| protein recA [Phytophthora infestans T30-4]
 gi|262100655|gb|EEY58707.1| protein recA [Phytophthora infestans T30-4]
          Length = 366

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/318 (59%), Positives = 257/318 (80%), Gaps = 4/318 (1%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           A+ QI+  +GKGA+MQLGS  +  E ++V+SSGSL LD+ALG GG P+GR+VEIYGPESS
Sbjct: 2   AIRQIESSFGKGAVMQLGSTKTA-ERVDVISSGSLSLDLALGTGGIPRGRVVEIYGPESS 60

Query: 79  GKTTLALHTIAQSQKT-GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           GKTTLAL  IA++QKT GG CAF+DAEHA+D+ YA+ LGVD+  L +SQPD+GE+ALEI 
Sbjct: 61  GKTTLALSCIAEAQKTEGGVCAFIDAEHAIDAHYAKALGVDIDALYVSQPDSGEEALEIA 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D L+RSGAVD++V+DSVAAL PRAE+EG+MG+    +QARLMSQALRKLT S+S+S C +
Sbjct: 121 DTLIRSGAVDLVVLDSVAALVPRAELEGEMGDQQIALQARLMSQALRKLTGSLSKSNCTI 180

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           +F+NQ+R K+G++FGSPE T+GG AL++Y+SVRLDIRR  +IK+ D + GN+T VKV KN
Sbjct: 181 IFLNQIRQKVGIIFGSPEVTSGGTALRYYASVRLDIRRKTAIKEGDQVVGNETAVKVAKN 240

Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG--QRLGQGRENSKI 315
           K+ASPFK   FD+M+G GI    EL+DLGV+  ++ +SGAW+S  G  + + QG+  +K+
Sbjct: 241 KLASPFKVATFDMMFGRGIDRQSELLDLGVQHGLLKRSGAWYSLAGSDEPIAQGKAKAKV 300

Query: 316 FLRENIEIAENIESLLRQ 333
           FL+EN EI++++E+ LR+
Sbjct: 301 FLQENPEISKDLEAKLRR 318


>gi|148243210|ref|YP_001228367.1| recombinase A [Synechococcus sp. RCC307]
 gi|147851520|emb|CAK29014.1| RecA protein (recombinase A) [Synechococcus sp. RCC307]
          Length = 373

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/345 (57%), Positives = 261/345 (75%), Gaps = 7/345 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL   L+QI+R +GKG+IM+LG    +   +E +S+G+L LD+ALG GG+PKGR+V
Sbjct: 13  EREKALGLVLNQIERNFGKGSIMRLGDASRMR--VETISTGALTLDLALG-GGYPKGRVV 69

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ Q++GG  AFVDAEHALD +YA  LGVD++NLL+SQPDTG
Sbjct: 70  EIYGPESSGKTTLTLHAIAEVQRSGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTG 129

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D LVRS AVD++V+DSVAALTPRAEIEG+MG+   G QARLMSQA+RK+T +I
Sbjct: 130 EMALEIVDQLVRSAAVDLVVVDSVAALTPRAEIEGEMGDLAVGAQARLMSQAMRKITGNI 189

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K      G + 
Sbjct: 190 GKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRATEEYGIRA 249

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV KNK+A PF+  EFDI++G GIS  G L+DL  +  +V + GAW+S+ G  +GQGR
Sbjct: 250 KVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVVRKGAWYSYNGDNVGQGR 309

Query: 311 ENSKIFLRENIEIAENIESLLRQN----AGLVADSLLQEPAINTK 351
           +N+  +L +N E  + IE L RQ     A + A+S+    A+  K
Sbjct: 310 DNTITWLEQNPEACQEIEQLTRQKLTAGADVTANSMKPLAAVGAK 354


>gi|306450657|gb|ADM88581.1| RecA [Propionibacterium acnes]
          Length = 293

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 192/290 (66%), Positives = 238/290 (82%), Gaps = 2/290 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL  AL QI++ +GKG+IM+LG Q ++   I  + +GS+ LD+ALG+GG P+GRIV
Sbjct: 6   DREKALATALQQIEKQHGKGSIMRLGEQETV--KIAAIPTGSVALDVALGVGGLPRGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA +Q  GG CAF+DAEHALD  YARKLGVD  +LL+SQPD G
Sbjct: 64  EIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPEYARKLGVDTDSLLVSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGA++++V+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADTLVRSGALELVVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + +    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RRV ++KD   + GN+T
Sbjct: 184 NAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRVETLKDGSEMVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           RVKV KNK+A PFKQ EFDI+YG+GIS  G LID+GV   I+ KSG+WFS
Sbjct: 244 RVKVAKNKVAPPFKQAEFDILYGQGISREGSLIDMGVDCGIITKSGSWFS 293


>gi|148878993|emb|CAM07012.1| RecA protein [Mycobacterium sp. MG5]
          Length = 289

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 188/280 (67%), Positives = 236/280 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAE
Sbjct: 9   ISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 68

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA+KLGVD  +LL+SQPDTGEQALEI DMLVRSGA+ +IVIDSVAAL PRAEIE
Sbjct: 69  HALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAISLIVIDSVAALVPRAEIE 128

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFGSPETTTGG ALK
Sbjct: 129 GEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALK 188

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FYSSVRLD+RR+ ++KD     GN+TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID
Sbjct: 189 FYSSVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGKGISKEGSLID 248

Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           +GV+   + KSG+WF+++G++LGQG+EN++ FL EN+++A
Sbjct: 249 MGVEQGFIRKSGSWFTYEGEQLGQGKENARNFLLENVDVA 288


>gi|89889682|ref|ZP_01201193.1| RecA/RadA recombinase [Flavobacteria bacterium BBFL7]
 gi|89517955|gb|EAS20611.1| RecA/RadA recombinase [Flavobacteria bacterium BBFL7]
          Length = 307

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 188/295 (63%), Positives = 245/295 (83%), Gaps = 1/295 (0%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++ + +GSL L+ ALG+GG+P+GR+VEIYGPESSGKTTL LH IA++QK GG  AF+DAE
Sbjct: 11  VDSIPTGSLALNSALGVGGYPRGRVVEIYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAE 70

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HA D  YA KLGVD+ NL+ISQPD GEQALEI + L+RSGA+DIIVIDSVAALTP++EIE
Sbjct: 71  HAFDRFYAEKLGVDIDNLIISQPDHGEQALEIAENLIRSGAIDIIVIDSVAALTPKSEIE 130

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+ ARLMSQALRK+T +IS++ C ++FINQ+R KIGVMFG+PETTTGGNALK
Sbjct: 131 GEMGDSKMGLHARLMSQALRKMTGTISKTNCTVIFINQLREKIGVMFGNPETTTGGNALK 190

Query: 225 FYSSVRLDIRRVGSIKDKD-SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           FY+SVRLDIRR   IKD   S+ GN+TRVKVVKNK+A PF+  EFDIMYGEG+S  GE+I
Sbjct: 191 FYASVRLDIRRSTQIKDTSGSVLGNKTRVKVVKNKVAPPFRTAEFDIMYGEGVSILGEII 250

Query: 284 DLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLV 338
           DLGV+  I++K+G+WFS++  +LGQGR++ K  L++N ++A+ +++ + +   LV
Sbjct: 251 DLGVEYEIINKAGSWFSYEDTKLGQGRDSVKNILKDNPDLADELQAKIMEAIRLV 305


>gi|2500089|sp|Q59597|RECA_NEIFL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|1354913|gb|AAB49192.1| RecA [Neisseria flavescens]
          Length = 274

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 192/276 (69%), Positives = 234/276 (84%), Gaps = 3/276 (1%)

Query: 31  AIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           +IM++ GSQ    E ++V+S+GSLG+D+ALG+GG P+GR+VEI+GPESSGKTTL L  IA
Sbjct: 1   SIMKMDGSQQE--ENLDVISTGSLGVDLALGVGGLPRGRVVEIFGPESSGKTTLCLEAIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           Q QK GG CAF+DAEHA D IYARKLGV ++ L +SQPDTGEQALEI D LVRSG +D++
Sbjct: 59  QCQKNGGICAFIDAEHAFDPIYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGIDMV 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  I R+  ++VFINQ+RMKIGV
Sbjct: 119 VVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGHIKRTNTLVVFINQIRMKIGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFGSPETTTGGNALKFY+SVRLDIRR G IK  D + GN+T+VKV+KNK+A PF+Q EFD
Sbjct: 179 MFGSPETTTGGNALKFYASVRLDIRRTGQIKKGDDVIGNETKVKVIKNKVAPPFRQAEFD 238

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           I+YGEGIS+ GELIDLGVK  IV+KSGAW+S+ G +
Sbjct: 239 ILYGEGISWEGELIDLGVKHDIVEKSGAWYSYNGAK 274


>gi|288906375|ref|YP_003431597.1| recombination protein A [Streptococcus gallolyticus UCN34]
 gi|306832421|ref|ZP_07465574.1| recombination protein A [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325979389|ref|YP_004289105.1| recombinase A [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
 gi|288733101|emb|CBI14682.1| recombination protein A [Streptococcus gallolyticus UCN34]
 gi|304425461|gb|EFM28580.1| recombination protein A [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325179317|emb|CBZ49361.1| recombinase A [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 384

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 199/357 (55%), Positives = 272/357 (76%), Gaps = 7/357 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERKKALDDALKLIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G++  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDNHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KDS  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGSGDQKDSNI 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK  E +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTGELVKIASDLDIIKKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA-INTKDDADKDDTDNV 362
           GQG EN+K +L E+ E+ + I+  +R + GLV ++  ++ A +  +  A  D+ D V
Sbjct: 316 GQGSENAKKYLAEHPEVFDEIDHKVRVHYGLVEETEDEKAADVVEESAATNDNVDEV 372


>gi|2500090|sp|Q59619|RECA_NEIMU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|1354923|gb|AAB49197.1| RecA [Neisseria mucosa]
          Length = 274

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 192/276 (69%), Positives = 234/276 (84%), Gaps = 3/276 (1%)

Query: 31  AIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           +IM++ GSQ    E ++V+S+GSLG+D+ALG+GG P+GR+VEI+GPESSGKTTL L  IA
Sbjct: 1   SIMKMDGSQQE--ENLDVISTGSLGVDLALGVGGLPRGRVVEIFGPESSGKTTLCLEAIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           Q QK GG CAF+DAEHA D IYARKLGV ++ L +SQPDTGEQALEI D LVRSG VD++
Sbjct: 59  QCQKNGGICAFIDAEHAFDPIYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGVDMV 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  I R+  ++VFINQ+RMKIGV
Sbjct: 119 VVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGHIKRTNTLVVFINQIRMKIGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFGSPETTTGGNALKFY+SVRLDIRR G IK  D + GN+T+VKV+KNK+A PF+Q EFD
Sbjct: 179 MFGSPETTTGGNALKFYASVRLDIRRTGQIKKGDDVIGNETKVKVIKNKVAPPFRQAEFD 238

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           I+YGEG+S+ GELIDLGVK  IV+KSGAW+S+ G +
Sbjct: 239 ILYGEGVSWEGELIDLGVKYDIVEKSGAWYSYNGAK 274


>gi|99034602|ref|ZP_01314562.1| hypothetical protein Wendoof_01000622 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 292

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 186/267 (69%), Positives = 232/267 (86%)

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRI+EI+GPESSGKTTLALH IA++QK GG+CAF+DAEHALD +YARKLGV   +L+IS
Sbjct: 1   KGRIIEIFGPESSGKTTLALHVIAEAQKKGGSCAFIDAEHALDVLYARKLGVSTDDLVIS 60

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQAL I + LV SGAVD+IVIDSVAALTPRAEIEGDMG+   G+QARL+S  LRK
Sbjct: 61  QPDTGEQALHIVEYLVCSGAVDVIVIDSVAALTPRAEIEGDMGDQHMGLQARLLSHGLRK 120

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LTS++S++ CIL+FINQ+RMKIGV++G+PETTTGGNALKFY+SVRLDIR+VG IKDK++I
Sbjct: 121 LTSAVSKANCILIFINQIRMKIGVVYGNPETTTGGNALKFYTSVRLDIRKVGVIKDKENI 180

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           TGN+TRVKVVKNK+A PF++ +FDIMY EGIS  GE+ID+G K  +++K+GA++S+   R
Sbjct: 181 TGNETRVKVVKNKVAPPFREAKFDIMYNEGISKLGEIIDMGAKLGVLEKAGAYYSYNNTR 240

Query: 306 LGQGRENSKIFLRENIEIAENIESLLR 332
           LGQGREN K +L+ N E+A  IE+ +R
Sbjct: 241 LGQGRENVKTYLKTNKEVANEIETKIR 267


>gi|33866594|ref|NP_898153.1| recombinase A [Synechococcus sp. WH 8102]
 gi|50403570|sp|Q7U4K5|RECA_SYNPX RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|33633372|emb|CAE08577.1| RecA bacterial DNA recombination protein [Synechococcus sp. WH
           8102]
          Length = 375

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/323 (60%), Positives = 252/323 (78%), Gaps = 3/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL   L QI+R +GKG+IM+LG    +   +E +S+G+L LD+ALG GG+PKGR+V
Sbjct: 19  ERDKALNLVLGQIERNFGKGSIMRLGDASRMR--VETISTGALTLDLALG-GGYPKGRVV 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG  AFVDAEHALD +YA  LGVD++NLL+SQPDTG
Sbjct: 76  EIYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D LVRS AVDI+VIDSVAALTPRAEIEG+MG+   G QARLMSQA+RK+T +I
Sbjct: 136 EMALEIVDQLVRSAAVDIVVIDSVAALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K      G + 
Sbjct: 196 GKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKKGTEEFGIRA 255

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV KNK+A PF+  EFDI++G GIS  G L+DL  +  +V + GAW+S++G  +GQGR
Sbjct: 256 KVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVIRKGAWYSYEGDNIGQGR 315

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           +N+  ++ EN E A  IE L+RQ
Sbjct: 316 DNTITWMEENPEAAITIEQLVRQ 338


>gi|290890930|ref|ZP_06553994.1| hypothetical protein AWRIB429_1384 [Oenococcus oeni AWRIB429]
 gi|290479329|gb|EFD87989.1| hypothetical protein AWRIB429_1384 [Oenococcus oeni AWRIB429]
          Length = 376

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 199/350 (56%), Positives = 269/350 (76%), Gaps = 11/350 (3%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+AAL +I++ +GKG+IM+LG   ++   I+V+S+GSL LDIALG+GG+PKGRI+E
Sbjct: 5   RKAALDAALKKIEKDFGKGSIMRLGE--NVHTQIDVISTGSLKLDIALGVGGYPKGRIIE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           ++GPESSGKTT+ALH +A+ QK GGT A++DAE++LD+ YA+ LGV++ +LL+SQPDTGE
Sbjct: 63  VFGPESSGKTTVALHAVAEVQKQGGTAAYIDAENSLDAKYAQALGVNVDDLLLSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q LEI D LV SGA+D++VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL  +++
Sbjct: 123 QGLEIADDLVNSGAIDLLVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGTLN 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           R+  I +FINQ+R KIG+MFG+PETT GG ALKFYS+VRL++RR   IKD  +I GN T+
Sbjct: 183 RTGTIAIFINQIREKIGIMFGNPETTPGGRALKFYSTVRLEVRRSAQIKDGTNIVGNNTK 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           +KVVKNK+A PFK  E DIMYG+GIS  GELIDL V   I++KSGAW++++G+++GQGR 
Sbjct: 243 IKVVKNKVAPPFKVAEVDIMYGKGISQTGELIDLAVDKDIINKSGAWYAYQGEKIGQGRV 302

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           N+  +L       E+ E         +  S+  +  I  K D+D+D  DN
Sbjct: 303 NAISWLDSPEHKKEHDE---------IFTSVRDQYGIGEKKDSDEDPGDN 343


>gi|2500088|sp|Q59595|RECA_NEICI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|1354911|gb|AAB49191.1| RecA [Neisseria cinerea]
          Length = 274

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 191/276 (69%), Positives = 233/276 (84%), Gaps = 3/276 (1%)

Query: 31  AIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           +IM++ GSQ    E +EV+S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKTTL L  +A
Sbjct: 1   SIMKMDGSQQE--ENLEVISTGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           Q QK GG CAF+DAEHA D +YARKLGV ++ L +SQPDTGEQALEI D LVRSG VD++
Sbjct: 59  QCQKDGGVCAFIDAEHAFDPVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGVDMV 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DSVAAL P+AEIEGDMG+S  G+ ARLMSQALRKLT  I ++  ++VFINQ+RMKIGV
Sbjct: 119 VVDSVAALVPKAEIEGDMGDSHVGLHARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFGSPETTTGGNALKFYSSVRLDIRR G IK  + + GN+TRVKV+KNK+A PF+Q EFD
Sbjct: 179 MFGSPETTTGGNALKFYSSVRLDIRRTGQIKKGEEVIGNETRVKVIKNKVAPPFRQAEFD 238

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           I+YGEG+S+ GELID+GVK  I++KSGAW+S+ G +
Sbjct: 239 ILYGEGVSWEGELIDIGVKNDIINKSGAWYSYNGAK 274


>gi|313123309|ref|YP_004033568.1| recombinase a [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279872|gb|ADQ60591.1| recombinase A [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 369

 Score =  405 bits (1040), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/332 (58%), Positives = 267/332 (80%), Gaps = 2/332 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K  ALEAAL +I++ +GKGA+M++G +  +   I  V SGSL LD ALG+GG+P+GRIV
Sbjct: 5   EKQAALEAALKKIEKNFGKGAVMRMGEK--VDTQISTVPSGSLALDAALGVGGYPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+  L++SQP+TG
Sbjct: 63  EIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDQLILSQPNTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL+ +I
Sbjct: 123 EEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK   ++ GN+ 
Sbjct: 183 AKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSTNVIGNRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+     IVDK+GAW+S+ G+++GQGR
Sbjct: 243 KIKVVKNKVAPPFKVAEVDIMYGQGISQSGELLDMAADQDIVDKAGAWYSYHGEKIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL 342
           EN+K +L E+ +++E+I++ +R+  G+ A+SL
Sbjct: 303 ENAKQYLEEHPDVSEDIQTQVRKAYGIDAESL 334


>gi|325145699|gb|ADY86119.1| RecA [Burkholderia sp. T-22.1]
          Length = 338

 Score =  405 bits (1040), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/327 (61%), Positives = 249/327 (76%), Gaps = 1/327 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEI
Sbjct: 1   SKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSG++D+ VIDSVAAL P+AEIE                            
Sbjct: 120 ALEITDALVRSGSIDMXVIDSVAALVPKAEIEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 179

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
                   NQ+RMKIGVMFG+P TTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRV
Sbjct: 180 XXXXXXXXNQIRMKIGVMFGNPXTTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N
Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299

Query: 313 SKIFLRENIEIAENIESLLRQNAGLVA 339
           ++ FLREN EIA  IE+ +R++ G+ A
Sbjct: 300 AREFLRENPEIAREIENRIRESLGVAA 326


>gi|194334750|ref|YP_002016610.1| recombinase A [Prosthecochloris aestuarii DSM 271]
 gi|194312568|gb|ACF46963.1| recA protein [Prosthecochloris aestuarii DSM 271]
          Length = 349

 Score =  405 bits (1040), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/329 (62%), Positives = 261/329 (79%), Gaps = 3/329 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           KEM+   K K L  A+  +++ +GKG IM+LG    +   ++V+S+GS+ LD ALG+GGF
Sbjct: 11  KEMDPA-KLKQLNLAMETLEKQFGKGVIMRLGDAAVM--PVQVISTGSIALDFALGVGGF 67

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGR+VEIYGPESSGKTTLALH IA++QK GG  A VDAEHA D  YARKLGVD+  LL+
Sbjct: 68  PKGRVVEIYGPESSGKTTLALHAIAEAQKLGGVAAMVDAEHAFDQAYARKLGVDINALLV 127

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQP++GEQAL I + LVRSGAVDI+V+DSVAAL P+AE+EG+MG+S+ G+QARLMSQALR
Sbjct: 128 SQPESGEQALSIVETLVRSGAVDIVVVDSVAALVPQAELEGEMGDSVMGLQARLMSQALR 187

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT +IS+S  + VFINQ+R KIGV++G+PETTTGG ALKFYSSVRL+IR+   IKD   
Sbjct: 188 KLTGAISKSSSVAVFINQLRDKIGVVYGNPETTTGGKALKFYSSVRLEIRKTAQIKDGVD 247

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           I GN+T+VKVVKNK+A PFK VEFDI+YGEGIS  GELIDL V+  IV K+GAWFS++ +
Sbjct: 248 IIGNRTKVKVVKNKVAPPFKTVEFDILYGEGISVMGELIDLAVEFGIVKKAGAWFSYESE 307

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQ 333
           +LGQGRE  K   RE+ E+   I+  +++
Sbjct: 308 KLGQGREAVKKAFREDQELYSRIQQQVKE 336


>gi|116513706|ref|YP_812612.1| recombinase A [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|122275524|sp|Q04BJ8|RECA_LACDB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|116093021|gb|ABJ58174.1| RecA protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|325125358|gb|ADY84688.1| Protein recA [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 369

 Score =  405 bits (1040), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/332 (58%), Positives = 267/332 (80%), Gaps = 2/332 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K  ALEAAL +I++ +GKGA+M++G +  +   I  V SGSL LD ALG+GG+P+GRIV
Sbjct: 5   EKKAALEAALKKIEKNFGKGAVMRMGEK--VDTQISTVPSGSLALDAALGVGGYPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+  L++SQP+TG
Sbjct: 63  EIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDQLILSQPNTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL+ +I
Sbjct: 123 EEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK   ++ GN+ 
Sbjct: 183 AKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSTNVIGNRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+     IVDK+GAW+S+ G+++GQGR
Sbjct: 243 KIKVVKNKVAPPFKVAEVDIMYGQGISQSGELLDMAADQDIVDKAGAWYSYHGEKIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL 342
           EN+K +L E+ +++E+I++ +R+  G+ A+SL
Sbjct: 303 ENAKKYLEEHPDVSEDIQTQVRKAYGIDAESL 334


>gi|158338139|ref|YP_001519315.1| recombinase A [Acaryochloris marina MBIC11017]
 gi|158308380|gb|ABW29997.1| protein RecA [Acaryochloris marina MBIC11017]
          Length = 352

 Score =  404 bits (1039), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/330 (59%), Positives = 255/330 (77%), Gaps = 3/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+  +  ++R +GKG+IM+LG    +   IE +S+G+L LD+ALG GG P+GR++
Sbjct: 9   EKQKALDLVMKNVERTFGKGSIMRLGDATRM--QIETISTGALTLDLALG-GGLPRGRVI 65

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IAQ QK GG  AFVDAEHALD +YA  LGVD+  LL+SQPD+G
Sbjct: 66  EIYGPESSGKTTVALHAIAQIQKNGGVAAFVDAEHALDPVYAAALGVDVSELLVSQPDSG 125

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D LVRS AVD++V+DSVAALTPRAEIEGDMG+S  G+QARLMSQALRK+TS+I
Sbjct: 126 EMALEIVDQLVRSSAVDLVVVDSVAALTPRAEIEGDMGDSHMGLQARLMSQALRKITSNI 185

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S   ++F+NQ+R KIGV +GSPE TTGGNALKFY+SVRLDIRR+ ++K    + G + 
Sbjct: 186 SKSGSTVIFLNQLRQKIGVTYGSPEVTTGGNALKFYASVRLDIRRIQTLKKGTDMFGIRA 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV KNK+A PF+  EFDI++G+GIS  G L+D+  +  ++ + GAW+SF G  +GQGR
Sbjct: 246 KVKVAKNKVAPPFRIAEFDILFGQGISTTGCLVDMAEETDVIVRKGAWYSFDGNNIGQGR 305

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           EN+  +  +N E AEN+E  +RQ   L A+
Sbjct: 306 ENTIQYFIDNPEFAENVEQQVRQKLELGAE 335


>gi|58415327|emb|CAH57078.1| recA protein [Enterovibrio norvegicus]
 gi|58415329|emb|CAH57079.1| recA protein [Enterovibrio norvegicus]
 gi|58415331|emb|CAH57080.1| recA protein [Enterovibrio norvegicus]
 gi|290795111|gb|ADD64571.1| RecA recombinase [Enterovibrio norvegicus]
 gi|290795113|gb|ADD64572.1| RecA recombinase [Enterovibrio norvegicus]
          Length = 265

 Score =  404 bits (1039), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/267 (72%), Positives = 231/267 (86%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   IE VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  +A+
Sbjct: 1   SIMRLGDDRTM--DIETVSTGSLSLDIALGAGGLPFGRIVEIYGPESSGKTTLTLQVVAE 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD +YARKLGVD+ NLL+SQPDTGEQALEI D L RSGAVD+I+
Sbjct: 59  AQKAGKTCAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIADALTRSGAVDVII 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT++I  S  +++FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D I GN TRVKVVKNK+A+PFKQ EF I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEIVGNDTRVKVVKNKIAAPFKQAEFQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYGEGI+ +GELIDLGVK  +V+K+GA
Sbjct: 239 MYGEGINLYGELIDLGVKHKLVEKAGA 265


>gi|319940107|ref|ZP_08014461.1| recA [Streptococcus anginosus 1_2_62CV]
 gi|319810821|gb|EFW07148.1| recA [Streptococcus anginosus 1_2_62CV]
          Length = 381

 Score =  404 bits (1039), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/334 (57%), Positives = 262/334 (78%), Gaps = 6/334 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGAIM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERQKALDTALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA+ LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAQALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++VIDSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+G+MFG+PETT GG ALKFY+SVRLD+R    IK    +KD+  
Sbjct: 196 NKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDEKDTNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GELI +     I+ K+GAW+S+  +++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           GQG EN+K +L ++ EI + I+  +R + GL+ D
Sbjct: 316 GQGSENAKKYLADHPEIFDEIDHKVRVHYGLIED 349


>gi|220918844|ref|YP_002494148.1| recA protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956698|gb|ACL67082.1| recA protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 316

 Score =  404 bits (1039), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 188/276 (68%), Positives = 236/276 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           + VV SGS+GLD+ALG+GG P+GR+VEI+GPESSGKTTLALH IA++QK GG  AF+DAE
Sbjct: 12  MPVVPSGSIGLDLALGVGGLPRGRVVEIFGPESSGKTTLALHAIAEAQKAGGVAAFLDAE 71

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YARKLGV+L  LL+SQPDTGEQALEI + LVRSGA D+IV+DSVAAL P+AEIE
Sbjct: 72  HALDVGYARKLGVNLGELLVSQPDTGEQALEIAEQLVRSGACDVIVVDSVAALVPKAEIE 131

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKLT  +SR++ ++VFINQ+RMKIGVMFG+PETTTGG+ALK
Sbjct: 132 GEMGDAHMGVQARLMSQALRKLTGVVSRNQTLVVFINQIRMKIGVMFGNPETTTGGHALK 191

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVR+DIRR+G +K+ D++ G++TRVKVVKNK+A PF++ EFDI YG G+  FGE +D
Sbjct: 192 FYASVRMDIRRIGQVKEGDAVVGSRTRVKVVKNKVAPPFREAEFDIRYGVGVDRFGEAVD 251

Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
           LGV+   V+KSGA FS  G+R+GQGRE +  +LR N
Sbjct: 252 LGVERGAVEKSGAHFSMDGERIGQGRERAAEWLRAN 287


>gi|157100333|emb|CAP03332.1| RecA protein [Vibrio aestuarianus]
          Length = 278

 Score =  404 bits (1039), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 187/280 (66%), Positives = 237/280 (84%), Gaps = 2/280 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTL 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RS
Sbjct: 59  TLELIAAAQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GA+D+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+
Sbjct: 119 GAIDVIVVDSVAALTPKAEIEGEMGDSXMGLQARMLSQAMRKLTGNLKQSNCMCIFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PF
Sbjct: 179 RMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
           KQ E  I+YG+G +  GEL+DLGVK  +V+K+GAW+S+ G
Sbjct: 239 KQAETQILYGQGFNREGELVDLGVKNKLVEKAGAWYSYNG 278


>gi|148878985|emb|CAM07008.1| RecA protein [Mycobacterium sp. MG1]
 gi|148879001|emb|CAM07016.1| RecA protein [Mycobacterium sp. MG9]
          Length = 289

 Score =  404 bits (1039), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 187/280 (66%), Positives = 236/280 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAE
Sbjct: 9   ISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 68

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA+KLGVD  +LL+SQPDTGEQALEI DMLVRSGA+ ++VIDSVAAL PRAEIE
Sbjct: 69  HALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAISLLVIDSVAALVPRAEIE 128

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFGSPETTTGG ALK
Sbjct: 129 GEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALK 188

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FYSSVRLD+RR+ ++KD     GN+TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID
Sbjct: 189 FYSSVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGKGISKEGSLID 248

Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           +GV+   + KSG+WF+++G++LGQG+EN++ FL EN+++A
Sbjct: 249 MGVEQGFIRKSGSWFTYEGEQLGQGKENARNFLLENVDVA 288


>gi|156067109|gb|ABR12776.2| recombinase A [Photobacterium kishitanii]
 gi|156067117|gb|ABR12780.2| recombinase A [Photobacterium kishitanii]
 gi|156067119|gb|ABR12781.2| recombinase A [Photobacterium kishitanii]
 gi|156067121|gb|ABR12782.2| recombinase A [Photobacterium kishitanii]
          Length = 278

 Score =  404 bits (1039), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/280 (68%), Positives = 236/280 (84%), Gaps = 2/280 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGP
Sbjct: 1   LAAALGQIEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L TIA +QK G TCAF+DAEHALD IYA KLGVD+  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLETIAAAQKAGKTCAFIDAEHALDPIYAEKLGVDINQLLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 IVDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           KNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +V+K+
Sbjct: 239 KNKIAAPFKQAETQILYGQGFNRNGELIDLGVKHKLVEKA 278


>gi|253582692|ref|ZP_04859913.1| recombination protein RecA [Fusobacterium varium ATCC 27725]
 gi|251835562|gb|EES64102.1| recombination protein RecA [Fusobacterium varium ATCC 27725]
          Length = 363

 Score =  404 bits (1039), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/333 (59%), Positives = 258/333 (77%), Gaps = 3/333 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +  K   + +K KALE A+ QI++ +G+G+IM+LG    +   +EV+S+GS+ LD ALG+
Sbjct: 6   NTEKNREVSEKEKALELAMKQIKKDFGEGSIMKLGDNQEM--NVEVISTGSINLDAALGL 63

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GRIVEIYG ESSGKTT+ALH  A++QKTGG  AF+DAEHALD +YA+ LGVD+  
Sbjct: 64  GGVPRGRIVEIYGAESSGKTTIALHIAAEAQKTGGIVAFIDAEHALDPVYAKALGVDVDE 123

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLISQPD GEQALEI DMLVRSGAVD+IV+DSVAAL P+ EI+G+MG+   G+QARLMS+
Sbjct: 124 LLISQPDYGEQALEIADMLVRSGAVDLIVVDSVAALVPKVEIDGEMGDQQMGLQARLMSK 183

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           ALRKLT+++++SK  +VFINQ+R KIG   FG   TTTGG ALKFYSSVR++++R+GS+K
Sbjct: 184 ALRKLTATLNKSKTTMVFINQIRDKIGGFGFGPQTTTTGGKALKFYSSVRMEVKRIGSVK 243

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             D + GN+T VKV KNK+A PFK+  F IMYG+GIS  GE++D+ ++  IV KSGAWFS
Sbjct: 244 QGDEVIGNETVVKVTKNKIAPPFKEAAFQIMYGKGISRVGEILDMAIEKDIVAKSGAWFS 303

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           F   RLGQG+EN K+ L   IE+   IE  +++
Sbjct: 304 FGDIRLGQGKENVKVRLETEIELLAKIEEEVKK 336


>gi|148878987|emb|CAM07009.1| RecA protein [Mycobacterium sp. MG2]
          Length = 287

 Score =  404 bits (1039), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 187/280 (66%), Positives = 236/280 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAE
Sbjct: 7   ISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 66

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA+KLGVD  +LL+SQPDTGEQALEI DMLVRSGA+ ++VIDSVAAL PRAEIE
Sbjct: 67  HALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAISLLVIDSVAALVPRAEIE 126

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFGSPETTTGG ALK
Sbjct: 127 GEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALK 186

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FYSSVRLD+RR+ ++KD     GN+TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID
Sbjct: 187 FYSSVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGKGISKEGSLID 246

Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           +GV+   + KSG+WF+++G++LGQG+EN++ FL EN+++A
Sbjct: 247 MGVEQGFIRKSGSWFTYEGEQLGQGKENARNFLLENVDVA 286


>gi|264670202|gb|ACY72352.1| RecA [Neisseria sp. SMC-A9199]
          Length = 265

 Score =  404 bits (1039), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 187/259 (72%), Positives = 225/259 (86%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E ++V+S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKTTL L  IAQ QK GG CAF+D
Sbjct: 7   ENLDVISTGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAIAQCQKNGGICAFID 66

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHA D +YARKLGV ++ L +SQPDTGEQALEI D LVRSG VD++V+DSVAAL P+AE
Sbjct: 67  AEHAFDPVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGVDMVVVDSVAALVPKAE 126

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           IEG+MG+S  G+QARLMSQALRKLT  I R+  ++VFINQ+RMKIGVMFGSPETTTGGNA
Sbjct: 127 IEGEMGDSHVGLQARLMSQALRKLTGHIKRTNTLVVFINQIRMKIGVMFGSPETTTGGNA 186

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LKFY+SVRLDIRR G IK  D + GN+TRVKV+KNK+A PF+Q EFDI+YGEG+S+ GEL
Sbjct: 187 LKFYASVRLDIRRTGQIKKGDDVIGNETRVKVIKNKVAPPFRQAEFDILYGEGVSWEGEL 246

Query: 283 IDLGVKASIVDKSGAWFSF 301
           ID+GVK +IV+KSGAW+S+
Sbjct: 247 IDIGVKNNIVEKSGAWYSY 265


>gi|282860373|ref|ZP_06269441.1| RecA protein [Prevotella bivia JCVIHMP010]
 gi|282586871|gb|EFB92108.1| RecA protein [Prevotella bivia JCVIHMP010]
          Length = 341

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/322 (60%), Positives = 263/322 (81%), Gaps = 2/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+AA+++I++ +GKGAIM++G + ++   I+V+ +GSLGLD+ALG+GG+P+GRIVE
Sbjct: 14  KLKALQAAMAKIEKDFGKGAIMKMGDKVAV--KIDVIPTGSLGLDVALGVGGYPRGRIVE 71

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPESSGKTTLALH IA++QK  G  AF+DAEHA D  YA  LGVD+ NL ISQPD GE
Sbjct: 72  IFGPESSGKTTLALHAIAETQKQNGVAAFIDAEHAFDPTYAAALGVDINNLWISQPDNGE 131

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL+I D L+ S AVD++V+DSVAALTP+ EIEG+MG+S+ G+ ARLMSQALRKLTS+I+
Sbjct: 132 QALQIADQLISSSAVDLLVVDSVAALTPKKEIEGEMGDSVVGLHARLMSQALRKLTSTIA 191

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGVMFGSPETTTGGNALKFY+SVR+D+R+   IK+ + I GN T+
Sbjct: 192 KTNTCCIFINQLREKIGVMFGSPETTTGGNALKFYASVRVDVRKSTQIKEGEKILGNLTK 251

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF++ EFDI++G+GIS  GE+IDLGV+  I+ KSG+WFS+   +L QGR+
Sbjct: 252 VKVVKNKVAPPFRKCEFDIIFGQGISKLGEIIDLGVEYDIIKKSGSWFSYGDTKLAQGRD 311

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
             K  L++N E+ E +E L+++
Sbjct: 312 GVKAMLKDNPELTEELEGLIKE 333


>gi|255692793|ref|ZP_05416468.1| protein RecA [Bacteroides finegoldii DSM 17565]
 gi|260621510|gb|EEX44381.1| protein RecA [Bacteroides finegoldii DSM 17565]
          Length = 344

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/326 (61%), Positives = 263/326 (80%), Gaps = 2/326 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           +M   +K KAL+AA+ +I++ +GKG+IM++G      E +EV+ +GS+ L++ALG+GG+P
Sbjct: 14  KMASSEKLKALQAAMEKIEKSFGKGSIMKMGDDS--VEQVEVIPTGSIALNVALGVGGYP 71

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGV++ +L IS
Sbjct: 72  RGRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYASKLGVNIDDLYIS 131

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++  G+QARLMSQALRK
Sbjct: 132 QPDNGEQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRK 191

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+++S+++   +FINQ+R KIGVMFGSPETTTGGNALKFY+SVRLDIR    IKD + I
Sbjct: 192 LTAAVSKTRTTCIFINQLREKIGVMFGSPETTTGGNALKFYASVRLDIRPGQPIKDGEEI 251

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            G  T+VKVVKNK+A PF++ EFDIM+GEGIS  GE++DLG    I+ KSG+W+S+   +
Sbjct: 252 LGKLTKVKVVKNKVAPPFRRAEFDIMFGEGISHSGEIVDLGADLGIIKKSGSWYSYNDTK 311

Query: 306 LGQGRENSKIFLRENIEIAENIESLL 331
           LGQGR+ +K  + +N E+AE +E L+
Sbjct: 312 LGQGRDAAKQCIADNPELAEELEGLI 337


>gi|315221503|ref|ZP_07863423.1| protein RecA [Streptococcus anginosus F0211]
 gi|315189337|gb|EFU23032.1| protein RecA [Streptococcus anginosus F0211]
          Length = 381

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/334 (57%), Positives = 262/334 (78%), Gaps = 6/334 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGAIM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERQKALDTALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA+ LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAQALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++VIDSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+G+MFG+PETT GG ALKFY+SVRLD+R    IK    +KD+  
Sbjct: 196 NKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDEKDTNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GELI +     I+ K+GAW+S+  +++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           GQG EN+K +L ++ EI + I+  +R + GL+ D
Sbjct: 316 GQGSENAKKYLADHPEIFDEIDHKVRVHYGLIED 349


>gi|148878995|emb|CAM07013.1| RecA protein [Mycobacterium sp. MG6]
          Length = 288

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 187/280 (66%), Positives = 236/280 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAE
Sbjct: 9   ISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 68

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA+KLGVD  +LL+SQPDTGEQALEI DMLVRSGA+ ++VIDSVAAL PRAEIE
Sbjct: 69  HALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAISLLVIDSVAALVPRAEIE 128

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFGSPETTTGG ALK
Sbjct: 129 GEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALK 188

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FYSSVRLD+RR+ ++KD     GN+TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID
Sbjct: 189 FYSSVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGKGISKEGSLID 248

Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           +GV+   + KSG+WF+++G++LGQG+EN++ FL EN+++A
Sbjct: 249 MGVEQGFIRKSGSWFTYEGEQLGQGKENARNFLLENVDVA 288


>gi|86160035|ref|YP_466820.1| recA protein [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776546|gb|ABC83383.1| recA protein [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 316

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 187/276 (67%), Positives = 237/276 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           + VV SGS+GLD+ALG+GG P+GR+VEI+GPESSGKTTLALH IA++QK GG  AF+DAE
Sbjct: 12  MPVVPSGSIGLDLALGVGGLPRGRVVEIFGPESSGKTTLALHAIAEAQKAGGVAAFIDAE 71

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YARKLGV+L  LL+SQPDTGEQALEI + LVRSGA D+IV+DSVAAL P+AEIE
Sbjct: 72  HALDVGYARKLGVNLGELLVSQPDTGEQALEIAEQLVRSGACDVIVVDSVAALVPKAEIE 131

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKLT  +SR++ I+VFINQ+RMKIGV+FG+PETTTGG+ALK
Sbjct: 132 GEMGDSHMGVQARLMSQALRKLTGVVSRNQTIVVFINQIRMKIGVVFGNPETTTGGHALK 191

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVR+DIRR+G +K+ D++ G++TRVKVVKNK++ PF++ EFDI YG G+  F E +D
Sbjct: 192 FYASVRMDIRRIGQVKEGDAVVGSRTRVKVVKNKVSPPFREAEFDIRYGVGVDRFAEAVD 251

Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
           LGV+   V++SGA FSF+G+R+GQGRE +  +LR N
Sbjct: 252 LGVERGAVERSGAHFSFEGERIGQGRERAAEWLRAN 287


>gi|24380419|ref|NP_722374.1| recombinase A [Streptococcus mutans UA159]
 gi|290581350|ref|YP_003485742.1| recombination protein [Streptococcus mutans NN2025]
 gi|26007016|sp|P27624|RECA_STRMU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|24378444|gb|AAN59680.1|AE015030_10 recombination protein RecA [Streptococcus mutans UA159]
 gi|254998249|dbj|BAH88850.1| recombination protein [Streptococcus mutans NN2025]
          Length = 383

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/356 (55%), Positives = 270/356 (75%), Gaps = 6/356 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRIV
Sbjct: 18  ERKKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIV 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+R    IK     KDS  
Sbjct: 196 NKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRGNTQIKGTGEQKDSNI 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +I+YGEGIS  GEL+ +     I+ K+GAW+S+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIIYGEGISRTGELVKIASDLGIIQKAGAWYSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           GQG EN+K FL +N EI ++I+  +R   GL+ +   +E   + + + D+    N+
Sbjct: 316 GQGSENAKKFLADNPEIFDDIDHKVRVQYGLIEEDNTEEKQSSKEKETDEKADKNL 371


>gi|158341040|ref|YP_001522207.1| recombinase A [Acaryochloris marina MBIC11017]
 gi|158311281|gb|ABW32893.1| protein RecA [Acaryochloris marina MBIC11017]
          Length = 357

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/337 (57%), Positives = 259/337 (76%), Gaps = 5/337 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M  + EMN  +K KAL+  +  +++ +GKGAIM+LG    +   +E +SSG+L LD+ALG
Sbjct: 1   MSAKNEMN--EKQKALDLVMKNVEKTFGKGAIMRLGDATRM--QVETISSGALTLDLALG 56

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG P+GR++EIYGPESSGKTT+ALH I+Q QKTGG  AFVDAEHALD +YA  LGVD+ 
Sbjct: 57  -GGLPRGRVIEIYGPESSGKTTVALHAISQIQKTGGVAAFVDAEHALDPVYAAALGVDVS 115

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPD+GE ALEI D LVRS AVD++V+DSVAALTPRAEIEGDMG+S  G+QARLMS
Sbjct: 116 ELLVSQPDSGEMALEIVDQLVRSSAVDLVVVDSVAALTPRAEIEGDMGDSHMGLQARLMS 175

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRK+TS+I++S   ++F+NQ+R KIGV +G+PE TTGGNALKFY+SVRLDIRR+ ++K
Sbjct: 176 QALRKITSNIAKSGSTVIFLNQLRQKIGVTYGNPEVTTGGNALKFYASVRLDIRRIQTLK 235

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
               + G + +VKV KNK+A PF+  EFDI++G+GIS  G L+D+  +  I+ + GAW+S
Sbjct: 236 KGTDMYGIRAKVKVAKNKVAPPFRIAEFDILFGQGISTMGCLVDMAEEKDIIVRKGAWYS 295

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           + G  +GQGREN+  +  +N E A+++E  +RQ   L
Sbjct: 296 YDGSNIGQGRENTIQYFLDNPEFAQDVEQQVRQKLDL 332


>gi|148879003|emb|CAM07017.1| RecA protein [Mycobacterium sp. MG11]
          Length = 288

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/290 (65%), Positives = 241/290 (83%), Gaps = 2/290 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q
Sbjct: 1   MRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
             GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTGEQALEI DMLVRSGA+ +IVID
Sbjct: 59  AAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAISLIVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFG
Sbjct: 119 SVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           SPETTTGG ALKFYSSVRLD+RR+ ++KD     GN+TRVKVVKNK++ PFKQ EFDI+Y
Sbjct: 179 SPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILY 238

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           G+GIS  G LID+GV+   + KSG+WF+++G++LGQG+EN++ FL EN++
Sbjct: 239 GKGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGKENARNFLLENVD 288


>gi|110264779|gb|ABG56965.1| recA protein [Photobacterium kishitanii]
 gi|156067105|gb|ABR12774.2| recombinase A [Photobacterium kishitanii]
          Length = 278

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/280 (68%), Positives = 236/280 (84%), Gaps = 2/280 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGP
Sbjct: 1   LAAALGQIEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L TIA +QK G TCAF+DAEHALD IYA KLGVD+  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLETIAAAQKVGKTCAFIDAEHALDPIYAEKLGVDINQLLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 IVDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           KNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +V+K+
Sbjct: 239 KNKIAAPFKQAETQILYGQGFNRNGELIDLGVKHKLVEKA 278


>gi|260171325|ref|ZP_05757737.1| recombinase A [Bacteroides sp. D2]
 gi|315919636|ref|ZP_07915876.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693511|gb|EFS30346.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 344

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/321 (61%), Positives = 262/321 (81%), Gaps = 2/321 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AA+ +I++ +GKG+IM++G      E +EV+ +GS+ L++ALG+GG+P+GRI+
Sbjct: 19  EKLKALQAAMEKIEKSFGKGSIMKMGDDS--VEQVEVIPTGSIALNVALGVGGYPRGRII 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGV++ +L ISQPD G
Sbjct: 77  EIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYASKLGVNIDDLYISQPDNG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++  G+QARLMSQALRKLT+++
Sbjct: 137 EQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTAAV 196

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+++   +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR    IKD + I G  T
Sbjct: 197 SKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQPIKDGEEILGKLT 256

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG +  I+ KSG+W+S+   +LGQGR
Sbjct: 257 KVKVVKNKVAPPFRRAEFDIMFGEGISHSGEIIDLGAELGIIKKSGSWYSYNDTKLGQGR 316

Query: 311 ENSKIFLRENIEIAENIESLL 331
           + +K  + +N E+AE +E L+
Sbjct: 317 DAAKQCIMDNPELAEELEGLI 337


>gi|187251927|ref|YP_001876409.1| recA protein [Elusimicrobium minutum Pei191]
 gi|186972087|gb|ACC99072.1| RecA protein [Elusimicrobium minutum Pei191]
          Length = 353

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 186/324 (57%), Positives = 266/324 (82%), Gaps = 2/324 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K+KALE A+SQI++ +GK AI++LG+ GSI + I+ +S+G+L LD+ALG+GG P+GR++
Sbjct: 4   NKAKALELAMSQIEKSFGKEAILKLGA-GSI-KKIDAISTGALSLDLALGVGGVPRGRVI 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPE+ GKTTL+LH  AQ+QK+GG  AF+DAEHALD +YA  +GVD+  L +SQPD+G
Sbjct: 62  EIYGPEAGGKTTLSLHIAAQAQKSGGVVAFIDAEHALDPVYANSIGVDVDELFVSQPDSG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+D+I+IDSVAAL PRAEIEG+MG++  G+QARLMSQALRKLTS +
Sbjct: 122 EQALEIAEKLVRSGAIDLIIIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTSLL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K  ++FINQ+R KIG+MFG+PETT GG ALKFYSSVR+D+R++ ++K  D I G + 
Sbjct: 182 AKTKTSIIFINQIRQKIGIMFGNPETTPGGLALKFYSSVRIDVRKIENLKKGDEIIGTRV 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R KV KNK+A P++Q EF +++GEGIS    ++D+GV+A I++KSG+WF +  ++LGQG 
Sbjct: 242 RAKVTKNKVAPPYRQAEFTMLHGEGISRESCILDMGVQAGIIEKSGSWFLYGQEKLGQGA 301

Query: 311 ENSKIFLRENIEIAENIESLLRQN 334
           +N++ +L++N E+A+ +E  L++ 
Sbjct: 302 DNARQYLKDNAELAQELEDKLKEK 325


>gi|153807776|ref|ZP_01960444.1| hypothetical protein BACCAC_02059 [Bacteroides caccae ATCC 43185]
 gi|149129385|gb|EDM20599.1| hypothetical protein BACCAC_02059 [Bacteroides caccae ATCC 43185]
          Length = 344

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/321 (61%), Positives = 262/321 (81%), Gaps = 2/321 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AA+ +I++ +GKG+IM++G      E +EV+ +GS+ L++ALG+GG+P+GRI+
Sbjct: 19  EKLKALQAAMEKIEKSFGKGSIMKMGDDS--VEQVEVIPTGSIALNVALGVGGYPRGRII 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGV++ +L ISQPD G
Sbjct: 77  EIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVNIDDLYISQPDNG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++  G+QARLMSQALRKLT+++
Sbjct: 137 EQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTAAV 196

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+++   +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR   +IKD + + G  T
Sbjct: 197 SKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQAIKDGEEVLGKLT 256

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG    I+ KSG+W+S+   +LGQGR
Sbjct: 257 KVKVVKNKVAPPFRRAEFDIMFGEGISHSGEIIDLGADLGIIKKSGSWYSYNDTKLGQGR 316

Query: 311 ENSKIFLRENIEIAENIESLL 331
           + +K  + +N E+AE +E L+
Sbjct: 317 DAAKQCIADNPELAEELEGLI 337


>gi|325684468|gb|EGD26632.1| recombination protein A [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 380

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/332 (58%), Positives = 267/332 (80%), Gaps = 2/332 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K  ALEAAL +I++ +GKGA+M++G +  +   I  V SGSL LD ALG+GG+P+GRIV
Sbjct: 16  EKQAALEAALKKIEKNFGKGAVMRMGEK--VDTQISTVPSGSLALDAALGVGGYPRGRIV 73

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+  L++SQP+TG
Sbjct: 74  EIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDQLILSQPNTG 133

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL+ +I
Sbjct: 134 EEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGTI 193

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK   ++ GN+ 
Sbjct: 194 AKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSTNVIGNRV 253

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+     IVDK+GAW+S+ G+++GQGR
Sbjct: 254 KIKVVKNKVAPPFKVAEVDIMYGQGISQSGELLDMAADQDIVDKAGAWYSYHGEKIGQGR 313

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL 342
           EN+K +L E+ +++E+I++ +R+  G+ A+SL
Sbjct: 314 ENAKQYLEEHPDVSEDIQTQVRKAYGIDAESL 345


>gi|298244233|ref|ZP_06968039.1| recA protein [Ktedonobacter racemifer DSM 44963]
 gi|297551714|gb|EFH85579.1| recA protein [Ktedonobacter racemifer DSM 44963]
          Length = 372

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/346 (61%), Positives = 261/346 (75%), Gaps = 14/346 (4%)

Query: 1   MDYRKEMNIVDKS------------KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVV 48
           M  +KE + VD++            KA+E AL QI+R +GKGAIM+LG    +   IE +
Sbjct: 1   MSTKKEKSTVDRNSTSSSGATTEREKAIEQALQQIERRFGKGAIMKLGDTAKV--QIEAI 58

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GS+ LD+ALGIGG P+GRI EIYGPESSGKTTL  H IA  QK GG  AF+DAEHA D
Sbjct: 59  STGSVALDLALGIGGLPRGRITEIYGPESSGKTTLCQHVIANVQKMGGYAAFIDAEHAFD 118

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YA + G+D  +LLISQPDTGEQALEI D LVRS AVD++V+DSVAAL PRAEIEG+MG
Sbjct: 119 RVYASRCGIDTNSLLISQPDTGEQALEIVDSLVRSNAVDVVVVDSVAALVPRAEIEGEMG 178

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRKLT +IS S C ++F NQ+R KIGVMFG+PETT GG ALKFY+S
Sbjct: 179 DSHVGLQARLMSQALRKLTGAISSSNCSVIFTNQLREKIGVMFGNPETTAGGKALKFYAS 238

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           VRLDIRR  SIK    + GN+TRV+VVKNK+A PFK  EFDIMY EGIS  G L+D+G++
Sbjct: 239 VRLDIRRTDSIKLGQDVVGNRTRVRVVKNKVAPPFKSAEFDIMYSEGISREGGLLDIGLE 298

Query: 289 ASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
             +V KSGAWF+    RLGQGREN+K FLR+N ++A+ I+  +R N
Sbjct: 299 MGLVKKSGAWFTVGDIRLGQGRENAKEFLRQNTDVAQAIDDQIRNN 344


>gi|73920655|gb|AAZ94163.1| RecA [Burkholderia sp. BC204]
          Length = 263

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/263 (73%), Positives = 231/263 (87%), Gaps = 1/263 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 2   FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 60

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 61  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 120

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 121 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 180

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 181 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 240

Query: 267 EFDIMYGEGISFFGELIDLGVKA 289
            FDI+YGEGIS  GE+IDLGV+A
Sbjct: 241 IFDILYGEGISRQGEIIDLGVQA 263


>gi|312127954|ref|YP_003992828.1| reca protein [Caldicellulosiruptor hydrothermalis 108]
 gi|312134802|ref|YP_004002140.1| reca protein [Caldicellulosiruptor owensensis OL]
 gi|312793176|ref|YP_004026099.1| reca protein [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312878042|ref|ZP_07737980.1| recA protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311774853|gb|ADQ04340.1| recA protein [Caldicellulosiruptor owensensis OL]
 gi|311777973|gb|ADQ07459.1| recA protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311795194|gb|EFR11585.1| recA protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|312180316|gb|ADQ40486.1| recA protein [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 356

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/346 (58%), Positives = 269/346 (77%), Gaps = 2/346 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M  +DK KAL+  + +I++ YGKGAIM+LG      E I+V+ +G+L LDIALG+GG P+
Sbjct: 1   MENLDKKKALDKVIMEIEKAYGKGAIMKLGEMAK--ENIDVIPTGALSLDIALGVGGVPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYG ESSGKTT+ALH IA++QK GG  AF+DAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 59  GRIVEIYGAESSGKTTIALHIIAEAQKMGGEAAFIDAEHALDPFYAKKLGVDINNLIVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+GEQALEI + LVRS A+D+IVIDSVAAL P+AEI+G+MGE+  G+QARLMSQALRKL
Sbjct: 119 PDSGEQALEIVEALVRSNAIDVIVIDSVAALVPQAEIDGEMGEAHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
               S++K  ++FINQ+R K+GVMFG+PETT GG ALKFY+SVRL++R+   IK +    
Sbjct: 179 AGITSKTKTTVIFINQLREKVGVMFGNPETTPGGRALKFYASVRLEVRKGEIIKSQGQPI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G++ +VKVVKNK+A PFK+ EFD++YGEGIS  G ++D+ V   ++ KSGAW+++ GQ++
Sbjct: 239 GSKVKVKVVKNKVAPPFKEAEFDLIYGEGISKEGNVLDVAVNIDVIQKSGAWYTYNGQKI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GQGREN+K FL+EN +I + I   +RQNA L  + +     I+ +D
Sbjct: 299 GQGRENAKQFLKENPDIMQEIIEKIRQNANLAFEKIKTTAEISDED 344


>gi|300812731|ref|ZP_07093138.1| RecA protein [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496271|gb|EFK31386.1| RecA protein [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 369

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/332 (58%), Positives = 266/332 (80%), Gaps = 2/332 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K  ALEAAL +I++ +GKGA+M++G +  +   I  V SGSL LD ALG+GG+P+GRIV
Sbjct: 5   EKQAALEAALKKIEKNFGKGAVMRMGEK--VDTQISTVPSGSLALDAALGVGGYPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+  L++SQP+TG
Sbjct: 63  EIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDQLILSQPNTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL+ +I
Sbjct: 123 EEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK   ++ GN+ 
Sbjct: 183 AKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSTNVIGNRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+     IVDK+GAW+S+ G+++GQGR
Sbjct: 243 KIKVVKNKVAPPFKVAEVDIMYGQGISQSGELLDMAADQDIVDKAGAWYSYHGEKIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL 342
           EN+K +L E+ +++E+I + +R+  G+ A+SL
Sbjct: 303 ENAKKYLEEHPDVSEDIRTQVRKAYGIDAESL 334


>gi|15150378|gb|AAK85426.1| RecA [Bordetella bronchiseptica]
 gi|15150380|gb|AAK85427.1| RecA [Bordetella pertussis]
          Length = 278

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 192/257 (74%), Positives = 227/257 (88%), Gaps = 1/257 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           SQI++ +GKG+IM+ G    +   I+VVS+GSLGLDIALG+GG P+GR++E+YGPESSGK
Sbjct: 22  SQIEKQFGKGSIMRYGDN-EVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEVYGPESSGK 80

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA+ QK GGTCAFVDAEHALD  YA KLGV+L +LLISQPDTGEQALEITD L
Sbjct: 81  TTLTLQVIAEMQKLGGTCAFVDAEHALDVQYASKLGVNLTDLLISQPDTGEQALEITDAL 140

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT++I R+ C+++FI
Sbjct: 141 VRSGSVDLIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFI 200

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK  D + GN+TRVKVVKNK+A
Sbjct: 201 NQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKKGDEVVGNETRVKVVKNKVA 260

Query: 261 SPFKQVEFDIMYGEGIS 277
            PFKQ EFDIMYG GIS
Sbjct: 261 PPFKQAEFDIMYGSGIS 277


>gi|110264741|gb|ABG56946.1| recA protein [Photobacterium kishitanii]
 gi|110264757|gb|ABG56954.1| recA protein [Photobacterium kishitanii]
 gi|110264759|gb|ABG56955.1| recA protein [Photobacterium kishitanii]
 gi|110264769|gb|ABG56960.1| recA protein [Photobacterium kishitanii]
 gi|110264771|gb|ABG56961.1| recA protein [Photobacterium kishitanii]
          Length = 277

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/279 (69%), Positives = 235/279 (84%), Gaps = 2/279 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGP
Sbjct: 1   LAAALGQIEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L TIA +QK G TCAF+DAEHALD IYA KLGVD+  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLETIAAAQKAGKTCAFIDAEHALDPIYAEKLGVDINQLLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 IVDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK 294
           KNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +V+K
Sbjct: 239 KNKIAAPFKQAETQILYGQGFNRNGELIDLGVKHKLVEK 277


>gi|81428101|ref|YP_395100.1| recombinase A [Lactobacillus sakei subsp. sakei 23K]
 gi|123728671|sp|Q38YD9|RECA_LACSS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|78609742|emb|CAI54788.1| DNA recombinase A [Lactobacillus sakei subsp. sakei 23K]
          Length = 355

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 189/327 (57%), Positives = 261/327 (79%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++  AL+AAL +I++ +GKG+IM++G +  +   +  VSSGSL LD ALG+GG+P+GRIV
Sbjct: 5   ERQAALDAALKKIEKNFGKGSIMRMGEK--VDTQVSTVSSGSLALDEALGVGGYPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGV++ +LL+SQPDTG
Sbjct: 63  EIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAENAMDPKYATALGVNIDDLLLSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 123 EQGLEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR  +IK+   + GN+ 
Sbjct: 183 NKTKTIALFINQIREKVGVMFGNPEVTPGGRALKFYSTVRLEVRRAETIKNGTDMIGNRA 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PFK  E DIMYG+GIS  GEL+D+ V+  I++KSG+W+S+  +R+GQGR
Sbjct: 243 RIKVVKNKVAPPFKVAEVDIMYGQGISRTGELVDMAVEKDIINKSGSWYSYGSERIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K +L ++ ++ + +   +R   G+
Sbjct: 303 ENAKNYLADHEDVEDEVRLKVRAAYGI 329


>gi|237713482|ref|ZP_04543963.1| recombinase A [Bacteroides sp. D1]
 gi|237722637|ref|ZP_04553118.1| recombinase A [Bacteroides sp. 2_2_4]
 gi|262407268|ref|ZP_06083816.1| recA protein [Bacteroides sp. 2_1_22]
 gi|293374067|ref|ZP_06620406.1| protein RecA [Bacteroides ovatus SD CMC 3f]
 gi|294809553|ref|ZP_06768248.1| RecA protein [Bacteroides xylanisolvens SD CC 1b]
 gi|298482690|ref|ZP_07000874.1| protein RecA [Bacteroides sp. D22]
 gi|229446464|gb|EEO52255.1| recombinase A [Bacteroides sp. D1]
 gi|229448447|gb|EEO54238.1| recombinase A [Bacteroides sp. 2_2_4]
 gi|262354076|gb|EEZ03168.1| recA protein [Bacteroides sp. 2_1_22]
 gi|292631028|gb|EFF49667.1| protein RecA [Bacteroides ovatus SD CMC 3f]
 gi|294443253|gb|EFG12025.1| RecA protein [Bacteroides xylanisolvens SD CC 1b]
 gi|295087159|emb|CBK68682.1| RecA protein [Bacteroides xylanisolvens XB1A]
 gi|298271153|gb|EFI12730.1| protein RecA [Bacteroides sp. D22]
          Length = 344

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/321 (61%), Positives = 261/321 (81%), Gaps = 2/321 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AA+ +I++ +GKG+IM++G      E +EV+ +GS+ L++ALG+GG+P+GRI+
Sbjct: 19  EKLKALQAAMEKIEKSFGKGSIMKMGDDS--VEQVEVIPTGSIALNVALGVGGYPRGRII 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGV++ +L ISQPD G
Sbjct: 77  EIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYASKLGVNIDDLYISQPDNG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++  G+QARLMSQALRKLT+++
Sbjct: 137 EQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTAAV 196

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+++   +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR    IKD + I G  T
Sbjct: 197 SKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQPIKDGEEILGKLT 256

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG    I+ KSG+W+S+   +LGQGR
Sbjct: 257 KVKVVKNKVAPPFRKAEFDIMFGEGISHSGEIIDLGADLGIIKKSGSWYSYNDTKLGQGR 316

Query: 311 ENSKIFLRENIEIAENIESLL 331
           + +K  + +N E+AE +E L+
Sbjct: 317 DAAKQCIMDNPELAEELEGLI 337


>gi|2500087|sp|Q59592|RECA_NEIAN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|1354909|gb|AAB49190.1| RecA [Neisseria animalis]
          Length = 274

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 187/259 (72%), Positives = 225/259 (86%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +EV+S+GSLGLD+ALG+GG P+GR+VEI+GPESSGKTTL L +IAQ QK GG CAF+D
Sbjct: 12  EDLEVISTGSLGLDLALGVGGLPRGRVVEIFGPESSGKTTLCLESIAQCQKNGGVCAFID 71

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHA D IYARKLGV ++ L +SQPDTGEQALEI D LVRSG VD++V+DSVAAL P+AE
Sbjct: 72  AEHAFDPIYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGVDMVVVDSVAALVPKAE 131

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           IEG+MG+S  G+QARLMSQALRKLT  I R+  ++VFINQ+RMKIGV++GSPETTTGGNA
Sbjct: 132 IEGEMGDSHVGLQARLMSQALRKLTGHIKRTNTLVVFINQIRMKIGVVYGSPETTTGGNA 191

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LKFY+SVRLDIRR G IK  D I GN+T+VKV+KNK+A PF+Q EFDI+YGEGIS+ GEL
Sbjct: 192 LKFYASVRLDIRRAGQIKKGDEILGNETKVKVIKNKVAPPFRQAEFDILYGEGISWEGEL 251

Query: 283 IDLGVKASIVDKSGAWFSF 301
           ID+GVK  I+DKSGAW+S+
Sbjct: 252 IDIGVKHDIIDKSGAWYSY 270


>gi|116493024|ref|YP_804759.1| RecA protein [Pediococcus pentosaceus ATCC 25745]
 gi|116103174|gb|ABJ68317.1| RecA protein [Pediococcus pentosaceus ATCC 25745]
          Length = 352

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 189/330 (57%), Positives = 260/330 (78%), Gaps = 2/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ +AL  AL +I++ +GKG+IM++G   ++   I  + SGSL LD ALG+GGFPKGRIV
Sbjct: 4   ERQEALNKALKKIEKNFGKGSIMRMGD--AVDTQISTIPSGSLALDDALGVGGFPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYATNLGVDIDSLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ L I D LV SGA+D++VIDSVAAL PRAEI+G+MG++  G+QAR+MSQALRKL+ SI
Sbjct: 122 EEGLAIADALVSSGAIDLVVIDSVAALVPRAEIDGEMGDAHVGLQARMMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+G+MFG+PETT GG ALKFY+++RL++RR   IKD   + GN+ 
Sbjct: 182 NKTKTIALFINQIREKVGIMFGNPETTPGGRALKFYATIRLEVRRAEQIKDGADVIGNRV 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PFK+ E DIMYG GIS  GE+ID+ V+  +V KSG+W+S+  +R+GQGR
Sbjct: 242 RIKVVKNKVAPPFKKAEVDIMYGHGISQTGEMIDMAVEKDLVGKSGSWYSYGDERIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           EN+K ++ E+ ++   I   +R+  G+VAD
Sbjct: 302 ENAKKYIDEHPDVRAEILGKVREAYGMVAD 331


>gi|51892803|ref|YP_075494.1| multifunctional protein involved in homologous recombination
           [Symbiobacterium thermophilum IAM 14863]
 gi|59798214|sp|Q67NU3|RECA_SYMTH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|51856492|dbj|BAD40650.1| multifunctional protein involved in homologous recombination
           [Symbiobacterium thermophilum IAM 14863]
          Length = 350

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/324 (62%), Positives = 268/324 (82%), Gaps = 3/324 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KA++ AL+QI++ +GKG+IM+LG Q S    +EV+ +GS+ LD+ALG+GG P+GRI E
Sbjct: 7   KQKAIDMALAQIEKQFGKGSIMRLGEQMSRLN-VEVIPTGSVALDVALGVGGLPRGRITE 65

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH IA++QK GG  AFVDAEHALD +YA+ LGVD+ NLL+SQPDTGE
Sbjct: 66  IYGPESSGKTTVALHVIAEAQKMGGVAAFVDAEHALDPVYAQALGVDIDNLLVSQPDTGE 125

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEIT+ LVRSGAVD++V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT +IS
Sbjct: 126 QALEITETLVRSGAVDVVVVDSVAALVPKAEIEGEMGDSFVGLQARLMSQALRKLTGAIS 185

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +SK +++FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++R+  ++K    + G++TR
Sbjct: 186 KSKAVVIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRKTETLKSGQEVVGSRTR 245

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG--VKASIVDKSGAWFSFKGQRLGQG 309
           VKVVKNK+A PFKQ EFDI+YG+GIS  G LID+G  +   ++ KSGAW+S+   R+GQG
Sbjct: 246 VKVVKNKVAPPFKQAEFDILYGQGISKEGSLIDIGTELNPPVIVKSGAWYSYGDLRIGQG 305

Query: 310 RENSKIFLRENIEIAENIESLLRQ 333
           ++N++ +LR++ E+A  IE  +++
Sbjct: 306 KDNARDWLRQHPEVAAEIEQKIKE 329


>gi|87126813|gb|ABD21327.1| recombinase A protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202553|gb|ABD30363.1| recombination protein RecA, putative [Staphylococcus aureus subsp.
           aureus NCTC 8325]
          Length = 322

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 192/305 (62%), Positives = 243/305 (79%), Gaps = 2/305 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG   +I   +   S+GS+ LD ALG+GG+PKGRI+EIYGPESSGKTT+ALH IA+ Q
Sbjct: 1   MKLGD--NIGRRVSTTSTGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIAEVQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
             GG  AF+DAEHALD  YA+ LGVD+ NL +SQPD GEQ LEI +  VRSGAVDI+V+D
Sbjct: 59  SNGGVAAFIDAEHALDPEYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVD 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +IS+S    +FINQ+R K+GVMFG
Sbjct: 119 SVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETT GG ALKFYSSVRL++RR   +K    I GN+T++KVVKNK+A PF+  E DIMY
Sbjct: 179 NPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRTKIKVVKNKVAPPFRVAEVDIMY 238

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           G+GIS  GELIDLGV+  IVDKSGAW+S+ G+R+GQG+EN K++L+EN +I E I+  LR
Sbjct: 239 GQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGKENVKMYLKENPQIKEEIDRKLR 298

Query: 333 QNAGL 337
           +  G+
Sbjct: 299 EKLGI 303


>gi|22538228|ref|NP_689079.1| recombinase A [Streptococcus agalactiae 2603V/R]
 gi|25012085|ref|NP_736480.1| recombinase A [Streptococcus agalactiae NEM316]
 gi|76799557|ref|ZP_00781686.1| recA protein [Streptococcus agalactiae 18RS21]
 gi|77406900|ref|ZP_00783924.1| recA protein [Streptococcus agalactiae H36B]
 gi|77410866|ref|ZP_00787223.1| recA protein [Streptococcus agalactiae CJB111]
 gi|54039033|sp|P65980|RECA_STRA5 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|54041793|sp|P65979|RECA_STRA3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|22535140|gb|AAN00952.1|AE014286_15 recA protein [Streptococcus agalactiae 2603V/R]
 gi|24413629|emb|CAD47706.1| recombination protein RecA [Streptococcus agalactiae NEM316]
 gi|76585086|gb|EAO61715.1| recA protein [Streptococcus agalactiae 18RS21]
 gi|77163084|gb|EAO74038.1| recA protein [Streptococcus agalactiae CJB111]
 gi|77174486|gb|EAO77331.1| recA protein [Streptococcus agalactiae H36B]
 gi|319745988|gb|EFV98270.1| recombination protein A [Streptococcus agalactiae ATCC 13813]
          Length = 379

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/350 (56%), Positives = 267/350 (76%), Gaps = 7/350 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRIV
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIV 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+R    IK     KD   
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRGNTQIKGTGEHKDHNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PF++   +IMYGEGIS  GELI +     I+ K+GAW+S+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFREAFVEIMYGEGISRTGELIKIASDLDIIQKAGAWYSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA-DSLLQEPAINTKDDAD 355
           GQG EN+K +L +N  I + I+  +R + G+   DS +Q   +  K++AD
Sbjct: 316 GQGSENAKKYLADNPAIFDEIDHKVRVHFGMTEDDSPVQSELVEEKNEAD 365


>gi|160887383|ref|ZP_02068386.1| hypothetical protein BACOVA_05402 [Bacteroides ovatus ATCC 8483]
 gi|299148957|ref|ZP_07042019.1| protein RecA [Bacteroides sp. 3_1_23]
 gi|156107794|gb|EDO09539.1| hypothetical protein BACOVA_05402 [Bacteroides ovatus ATCC 8483]
 gi|298513718|gb|EFI37605.1| protein RecA [Bacteroides sp. 3_1_23]
          Length = 344

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/321 (61%), Positives = 261/321 (81%), Gaps = 2/321 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AA+ +I++ +GKG+IM++G      E +EV+ +GS+ L++ALG+GG+P+GRI+
Sbjct: 19  EKLKALQAAMEKIEKSFGKGSIMKMGDDS--VEQVEVIPTGSIALNVALGVGGYPRGRII 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGV++ +L ISQPD G
Sbjct: 77  EIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYASKLGVNIDDLYISQPDNG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++  G+QARLMSQALRKLT+++
Sbjct: 137 EQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTAAV 196

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+++   +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR    IKD + I G  T
Sbjct: 197 SKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQPIKDGEEILGKLT 256

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG    I+ KSG+W+S+   +LGQGR
Sbjct: 257 KVKVVKNKVAPPFRRAEFDIMFGEGISHSGEIIDLGADLGIIKKSGSWYSYNDTKLGQGR 316

Query: 311 ENSKIFLRENIEIAENIESLL 331
           + +K  + +N E+AE +E L+
Sbjct: 317 DAAKQCIMDNPELAEELEGLI 337


>gi|77408125|ref|ZP_00784871.1| recA protein [Streptococcus agalactiae COH1]
 gi|77173225|gb|EAO76348.1| recA protein [Streptococcus agalactiae COH1]
          Length = 379

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/350 (56%), Positives = 267/350 (76%), Gaps = 7/350 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRIV
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIV 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+R    IK     KD   
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRGNTQIKGTGEHKDHNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PF++   +IMYGEGIS  GELI +     I+ K+GAW+S+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFREAFVEIMYGEGISRTGELIKIASDLDIIXKAGAWYSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA-DSLLQEPAINTKDDAD 355
           GQG EN+K +L +N  I + I+  +R + G+   DS +Q   +  K++AD
Sbjct: 316 GQGSENAKKYLADNPAIFDEIDHKVRVHFGMTEDDSPVQSELVEEKNEAD 365


>gi|71725937|gb|AAZ39086.1| homologous recombination protein [Exiguobacterium acetylicum]
          Length = 289

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/291 (65%), Positives = 240/291 (82%), Gaps = 2/291 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG      + + V+SSGS+ LDIALG GG+P+GR++E+YGPESSGKTT+
Sbjct: 1   EKQFGKGSIMKLGENAD--QKVSVISSGSITLDIALGAGGYPRGRVIEVYGPESSGKTTV 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALH IA+ QK GG  AF+DAEHALD  YA KLGV++  LL+SQPDTGEQALEI + LVRS
Sbjct: 59  ALHAIAEVQKQGGQAAFIDAEHALDPAYANKLGVNIDELLLSQPDTGEQALEIAEALVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVDI+V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ + ++SK I++FINQ+
Sbjct: 119 GAVDILVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGATNKSKTIVIFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           R KIGVMFG+PETT GG ALKFYSSVRL++RR  ++K+   + GN+T++KVVKNK+A PF
Sbjct: 179 REKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKNGTDVVGNKTKIKVVKNKIAPPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           KQ E DIMYG GIS  GELID+G    IV KSGAW+S+  +RLGQGREN+K
Sbjct: 239 KQAEVDIMYGLGISKVGELIDIGTDLDIVQKSGAWYSYNSERLGQGRENAK 289


>gi|116491365|ref|YP_810909.1| RecA protein [Oenococcus oeni PSU-1]
 gi|122276453|sp|Q04E78|RECA_OENOB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|116092090|gb|ABJ57244.1| RecA protein [Oenococcus oeni PSU-1]
          Length = 376

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/350 (56%), Positives = 268/350 (76%), Gaps = 11/350 (3%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+AAL +I++ +GKG+IM+LG   ++   ++V+S+GSL LDIALG+GG+PKGRI+E
Sbjct: 5   RKAALDAALKKIEKDFGKGSIMRLGE--NVHTQVDVISTGSLKLDIALGVGGYPKGRIIE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           ++GPESSGKTT+ALH  A+ QK GGT A++DAE++LD+ YA+ LGV++ +LL+SQPDTGE
Sbjct: 63  VFGPESSGKTTVALHAAAEVQKQGGTAAYIDAENSLDAKYAQALGVNVDDLLLSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q LEI D LV SGA+D++VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL  +++
Sbjct: 123 QGLEIADDLVNSGAIDLLVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGTLN 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           R+  I +FINQ+R KIG+MFG+PETT GG ALKFYS+VRL++RR   IKD  +I GN T+
Sbjct: 183 RTGTIAIFINQIREKIGIMFGNPETTPGGRALKFYSTVRLEVRRSAQIKDGTNIVGNNTK 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           +KVVKNK+A PFK  E DIMYG+GIS  GELIDL V   I++KSGAW++++G+++GQGR 
Sbjct: 243 IKVVKNKVAPPFKVAEVDIMYGKGISQTGELIDLAVDKDIINKSGAWYAYQGEKIGQGRV 302

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           N+  +L       E+ E         +  S+  +  I  K D+D+D  DN
Sbjct: 303 NAISWLDSPEHKKEHDE---------IFTSVRDQYGIGEKKDSDEDPGDN 343


>gi|312622753|ref|YP_004024366.1| reca protein [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203220|gb|ADQ46547.1| recA protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 356

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/346 (57%), Positives = 269/346 (77%), Gaps = 2/346 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M  +DK KAL+  + +I++ YGKGAIM+LG      E I+V+ +G+L LDIALG+GG P+
Sbjct: 1   MENLDKKKALDKVIMEIEKAYGKGAIMKLGEMAK--ENIDVIPTGALSLDIALGVGGVPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYG ESSGKTT+ALH IA++QK GG  AF+DAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 59  GRIVEIYGAESSGKTTIALHIIAEAQKMGGEAAFIDAEHALDPFYAKKLGVDINNLIVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+GEQALEI + LVRS A+D+IVIDSVAAL P+AEI+G+MGE+  G+QARLMSQALRKL
Sbjct: 119 PDSGEQALEIVEALVRSNAIDVIVIDSVAALVPQAEIDGEMGEAHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
               S++K  ++FINQ+R K+G+MFG+PETT GG ALKFY+SVRL++R+   IK +    
Sbjct: 179 AGITSKTKTTVIFINQLREKVGIMFGNPETTPGGRALKFYASVRLEVRKGEIIKSQGQPI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G++ +VKVVKNK+A PFK+ EFD++YGEGIS  G ++D+ V   ++ KSGAW+++ GQ++
Sbjct: 239 GSKVKVKVVKNKVAPPFKEAEFDLIYGEGISKEGNVLDVAVNIDVIQKSGAWYTYNGQKI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GQGREN+K FL+EN +I + I   +RQNA L  + +     I+ +D
Sbjct: 299 GQGRENAKQFLKENPDIMQEIIEKIRQNANLAFEKIKTTAEISDED 344


>gi|303326375|ref|ZP_07356818.1| protein RecA [Desulfovibrio sp. 3_1_syn3]
 gi|302864291|gb|EFL87222.1| protein RecA [Desulfovibrio sp. 3_1_syn3]
          Length = 365

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/319 (63%), Positives = 259/319 (81%), Gaps = 3/319 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +++AL  ALS I+R YGKGA+M+L     +   I V+ +GS+GLD+ALG+GG P+GR+ E
Sbjct: 13  RAEALSTALSTIERKYGKGAVMKLSDDVQV--DIPVIPTGSIGLDLALGVGGIPRGRVTE 70

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPESSGKTTL LH IA+ QK GGTCAFVDAEHALD  YAR+LGV+   LLISQPD GE
Sbjct: 71  IFGPESSGKTTLTLHIIAECQKLGGTCAFVDAEHALDVAYARRLGVNTDELLISQPDYGE 130

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL+I DMLVRSGAVD++VIDSVAAL P+AE+EGDMGE+  G  ARLMS A+R+LT +I 
Sbjct: 131 QALDIADMLVRSGAVDMVVIDSVAALIPQAELEGDMGETQVGGHARLMSHAMRRLTGTIH 190

Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +S+  ++FINQ+RMKIGV  +GSPETTTGGNALKFYSSVR+DIRR+ ++KDKD   G++T
Sbjct: 191 KSRTSVIFINQIRMKIGVQGYGSPETTTGGNALKFYSSVRMDIRRIQTLKDKDEAFGSRT 250

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF+   FDI+YG+GIS  GEL+DLG++A IV++SG+WF+F  ++LGQGR
Sbjct: 251 KVKVVKNKVAPPFRIATFDILYGQGISRSGELLDLGIEAKIVEQSGSWFAFGSEKLGQGR 310

Query: 311 ENSKIFLRENIEIAENIES 329
           E  +  L EN+++   IE+
Sbjct: 311 EKVRALLDENLDLRNQIEA 329


>gi|294644659|ref|ZP_06722409.1| protein RecA [Bacteroides ovatus SD CC 2a]
 gi|292639993|gb|EFF58261.1| protein RecA [Bacteroides ovatus SD CC 2a]
          Length = 330

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/321 (61%), Positives = 261/321 (81%), Gaps = 2/321 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AA+ +I++ +GKG+IM++G      E +EV+ +GS+ L++ALG+GG+P+GRI+
Sbjct: 5   EKLKALQAAMEKIEKSFGKGSIMKMGDDS--VEQVEVIPTGSIALNVALGVGGYPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGV++ +L ISQPD G
Sbjct: 63  EIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYASKLGVNIDDLYISQPDNG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++  G+QARLMSQALRKLT+++
Sbjct: 123 EQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTAAV 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+++   +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR    IKD + I G  T
Sbjct: 183 SKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQPIKDGEEILGKLT 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG    I+ KSG+W+S+   +LGQGR
Sbjct: 243 KVKVVKNKVAPPFRKAEFDIMFGEGISHSGEIIDLGADLGIIKKSGSWYSYNDTKLGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLL 331
           + +K  + +N E+AE +E L+
Sbjct: 303 DAAKQCIMDNPELAEELEGLI 323


>gi|229269521|ref|YP_330622.2| recombinase A [Streptococcus agalactiae A909]
          Length = 365

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/350 (56%), Positives = 267/350 (76%), Gaps = 7/350 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRIV
Sbjct: 4   ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 62  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 122 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+R    IK     KD   
Sbjct: 182 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRGNTQIKGTGEHKDHNV 241

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PF++   +IMYGEGIS  GELI +     I+ K+GAW+S+ G+++
Sbjct: 242 GKETKIKVVKNKVAPPFREAFVEIMYGEGISRTGELIKIASDLDIIQKAGAWYSYNGEKI 301

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA-DSLLQEPAINTKDDAD 355
           GQG EN+K +L +N  I + I+  +R + G+   DS +Q   +  K++AD
Sbjct: 302 GQGSENAKKYLADNPAIFDEIDHKVRVHFGMTEDDSPVQSELVEEKNEAD 351


>gi|189501101|ref|YP_001960571.1| recombinase A [Chlorobium phaeobacteroides BS1]
 gi|189496542|gb|ACE05090.1| recA protein [Chlorobium phaeobacteroides BS1]
          Length = 350

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/322 (63%), Positives = 258/322 (80%), Gaps = 1/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K K L  A+  +++ +GKGAIM LG QG+I   ++ VS+GS+ LD ALG+GGFP+GR+ E
Sbjct: 17  KLKQLSLAVETLEKQFGKGAIMCLGDQGAIIP-VQSVSTGSIALDFALGVGGFPRGRVTE 75

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH IA++QK GG  A VDAEHA D  YA+KLG+D+ +LL+SQP++GE
Sbjct: 76  IYGPESSGKTTLALHAIAEAQKGGGIAAMVDAEHAFDQTYAKKLGLDIGSLLVSQPESGE 135

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL I + LVRSGAVDI+V+DSVAAL P+AE+EG+MG+S+ G+QARLMSQALRKLT +IS
Sbjct: 136 QALSIVETLVRSGAVDIVVVDSVAALVPQAELEGEMGDSVMGLQARLMSQALRKLTGAIS 195

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S  +++FINQ+R KIGV++G+PETTTGG ALKFYSSVRL+IR++  IKD   I GN+T+
Sbjct: 196 KSSAVVIFINQLRDKIGVVYGNPETTTGGKALKFYSSVRLEIRKIAQIKDGAEIIGNRTK 255

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PFK VEFDI+YGEGIS  GELIDL V+  IV K+GAWFS+   +LGQGRE
Sbjct: 256 VKVVKNKVAPPFKIVEFDILYGEGISVLGELIDLAVEFGIVKKAGAWFSYDSDKLGQGRE 315

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
             K  LRE+  +   I   +R+
Sbjct: 316 AVKKTLREDSALLSTIRKQVRE 337


>gi|76563867|gb|ABA46365.1| RecA [Photobacterium halotolerans]
          Length = 276

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 187/278 (67%), Positives = 237/278 (85%), Gaps = 2/278 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL
Sbjct: 1   EKEFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTL 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L TIA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RS
Sbjct: 59  TLETIAAAQRKGKTCAFIDAEHALDPIYAKKLGVDIDQLLVSQPDTGEQALEICDALARS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVD+IV+DS+AALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+
Sbjct: 119 GAVDMIVVDSIAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PF
Sbjct: 179 RMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
           KQ +  I+YG+G +  GELIDLGVK  +++K+GAW+S+
Sbjct: 239 KQADTQILYGQGFNRNGELIDLGVKQKLIEKAGAWYSY 276


>gi|281356694|ref|ZP_06243185.1| recA protein [Victivallis vadensis ATCC BAA-548]
 gi|281316821|gb|EFB00844.1| recA protein [Victivallis vadensis ATCC BAA-548]
          Length = 360

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 191/328 (58%), Positives = 251/328 (76%), Gaps = 1/328 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M  ++  N + K K+LE A+SQI++ +GKG+IM+LG  G+    +  +S+GS+ LD+ALG
Sbjct: 1   MADKEARNNISKDKSLEIAISQIEKEFGKGSIMRLGDTGAAMTDVVAISTGSMALDLALG 60

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG P GRIVEI+GPESSGKTT+ LH IA +Q  GG CA +DAEHA+D  YA+K+GVD+ 
Sbjct: 61  IGGVPAGRIVEIFGPESSGKTTVCLHVIANAQAKGGKCAIIDAEHAIDPGYAKKIGVDID 120

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NLLISQP+ GE AL I D LVR+ A+D++VIDSVAAL P+AEIEG+MG+S  G+QARLMS
Sbjct: 121 NLLISQPNCGEDALNICDTLVRTNAIDVLVIDSVAALVPKAEIEGEMGDSHVGLQARLMS 180

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT + SRSK  ++F NQ+R KIGVMFG+PETT GGNALKFY+S+R+DIR+   IK
Sbjct: 181 QALRKLTGAASRSKTCIIFTNQIREKIGVMFGNPETTPGGNALKFYASIRMDIRKTTVIK 240

Query: 241 DK-DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           D   +I GN+ RVKV+KNKMA PF+  EFDIMY EGIS  G L+D+     I++K G+WF
Sbjct: 241 DPAGNIIGNRARVKVIKNKMAPPFRVAEFDIMYNEGISKAGSLLDVATDMGILEKRGSWF 300

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENI 327
           S  G++LGQGR+ +K  +  + E+ + +
Sbjct: 301 SLDGEQLGQGRDQTKALIAASPELQQKL 328


>gi|148793418|gb|ABR12773.1| recombinase A [Photobacterium phosphoreum]
 gi|156025125|gb|ABR12772.2| recombinase A [Photobacterium phosphoreum]
 gi|156067123|gb|ABR12783.2| recombinase A [Photobacterium phosphoreum]
 gi|156067141|gb|ABR12792.2| recombinase A [Photobacterium phosphoreum]
 gi|156067143|gb|ABR12793.2| recombinase A [Photobacterium phosphoreum]
 gi|156067147|gb|ABR12795.2| recombinase A [Photobacterium phosphoreum]
 gi|156067153|gb|ABR12798.2| recombinase A [Photobacterium phosphoreum]
          Length = 278

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 192/280 (68%), Positives = 236/280 (84%), Gaps = 2/280 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGP
Sbjct: 1   LAAALGQIEKQFGKGSIMKLGDNKTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  I+ +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLEVISAAQKQGKTCAFIDAEHALDPIYAQKLGVDINELLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 IVDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           KNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +V+K+
Sbjct: 239 KNKIAAPFKQAETQILYGQGFNRNGELIDLGVKNKLVEKA 278


>gi|225869412|ref|YP_002745360.1| RecA recombinase (recombinase A) [Streptococcus equi subsp.
           zooepidemicus]
 gi|225871410|ref|YP_002747357.1| RecA recombinase (recombinase A) [Streptococcus equi subsp. equi
           4047]
 gi|254790447|sp|C0MAR6|RECA_STRE4 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|259563345|sp|C0MGB6|RECA_STRS7 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|225700814|emb|CAW95513.1| RecA recombinase (recombinase A) [Streptococcus equi subsp. equi
           4047]
 gi|225702688|emb|CAX00795.1| RecA recombinase (recombinase A) [Streptococcus equi subsp.
           zooepidemicus]
          Length = 378

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/335 (57%), Positives = 261/335 (77%), Gaps = 6/335 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G++  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDNHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KDS  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGTTQIKGTGDQKDSSI 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK  E +IMYGEGIS  GELI +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELIKIASDLDIIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           GQG EN+K +L ++ E+ + I+  +R   GL+ D+
Sbjct: 316 GQGSENAKRYLADHPELFDEIDHKVRVKFGLLEDT 350


>gi|195978966|ref|YP_002124210.1| recombinase A [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|238689786|sp|B4U0I8|RECA_STREM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|195975671|gb|ACG63197.1| DNA recombinase protein RecA [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 378

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/335 (57%), Positives = 261/335 (77%), Gaps = 6/335 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G++  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDNHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KDS  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGTTQIKGTGDQKDSSI 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK  E +IMYGEGIS  GELI +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELIKIASDLDIIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           GQG EN+K +L ++ E+ + I+  +R   GL+ D+
Sbjct: 316 GQGSENAKRYLADHPELFDEIDHKVRVKFGLLEDT 350


>gi|123969301|ref|YP_001010159.1| recombinase A [Prochlorococcus marinus str. AS9601]
 gi|166220667|sp|A2BTE1|RECA_PROMS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|91070237|gb|ABE11157.1| RecA bacterial DNA recombination protein [uncultured
           Prochlorococcus marinus clone HF10-11H11]
 gi|123199411|gb|ABM71052.1| RecA bacterial DNA recombination protein [Prochlorococcus marinus
           str. AS9601]
          Length = 365

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/319 (58%), Positives = 256/319 (80%), Gaps = 3/319 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL   L QI+R +G+G+IM+LG    +   +E +S+G+L LD+ALG GG+PKGR+VE+YG
Sbjct: 17  ALSLVLGQIERNFGRGSIMRLGDASRM--KVETISTGALTLDLALG-GGYPKGRVVEVYG 73

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL LH IA+ QK GG  AFVDAEHALD +YA  LGVD++NLL+SQPDTGE AL
Sbjct: 74  PESSGKTTLTLHAIAEVQKNGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMAL 133

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EI D L+RS AVD++V+DSVAALTPRAEIEG+MG+ + G QARLMSQA+RK+T +I +S 
Sbjct: 134 EIVDQLIRSSAVDLVVVDSVAALTPRAEIEGEMGDHVIGSQARLMSQAMRKITGNIGKSG 193

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K      G + +VKV
Sbjct: 194 CTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRAKVKV 253

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
            KNK+A PF+  EFDI++G+GIS  G L+DL  + +I+ + GAW+S++G+ +GQGR+N+ 
Sbjct: 254 AKNKVAPPFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYSYEGENIGQGRDNTI 313

Query: 315 IFLRENIEIAENIESLLRQ 333
           I+L +N+EI   +ES++++
Sbjct: 314 IWLDQNLEIRNKVESMVKE 332


>gi|78780039|ref|YP_398151.1| recombinase A [Prochlorococcus marinus str. MIT 9312]
 gi|123741423|sp|Q318I0|RECA_PROM9 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|78713538|gb|ABB50715.1| RecA protein [Prochlorococcus marinus str. MIT 9312]
          Length = 365

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/319 (58%), Positives = 256/319 (80%), Gaps = 3/319 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL   L QI+R +G+G+IM+LG    +   +E +S+G+L LD+ALG GG+PKGR+VE+YG
Sbjct: 17  ALSLVLGQIERNFGRGSIMRLGDASRM--KVETISTGALTLDLALG-GGYPKGRVVEVYG 73

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL LH IA+ QK GG  AFVDAEHALD +YA  LGVD++NLL+SQPDTGE AL
Sbjct: 74  PESSGKTTLTLHAIAEVQKNGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMAL 133

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EI D L+RS AVD++V+DSVAALTPRAEIEG+MG+ + G QARLMSQA+RK+T +I +S 
Sbjct: 134 EIVDQLIRSSAVDLVVVDSVAALTPRAEIEGEMGDHVIGSQARLMSQAMRKITGNIGKSG 193

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K      G + +VKV
Sbjct: 194 CTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRAKVKV 253

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
            KNK+A PF+  EFDI++G+GIS  G L+DL  + +I+ + GAW+S++G+ +GQGR+N+ 
Sbjct: 254 AKNKVAPPFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYSYEGENIGQGRDNTI 313

Query: 315 IFLRENIEIAENIESLLRQ 333
           I+L +N+EI   +ES++++
Sbjct: 314 IWLDQNLEIRNKVESMVKE 332


>gi|320547644|ref|ZP_08041929.1| recombination protein A [Streptococcus equinus ATCC 9812]
 gi|320447719|gb|EFW88477.1| recombination protein A [Streptococcus equinus ATCC 9812]
          Length = 384

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/335 (57%), Positives = 263/335 (78%), Gaps = 6/335 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+S+GSL LDIALG GG+PKGRI+
Sbjct: 18  ERKKALDDALKLIEKDFGKGAVMRLGERAE--QKVQVMSTGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G++  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDNHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+R    IK     KDS  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRGNTQIKGTGDQKDSNI 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK  E +IMYGEGIS  GELI +     I++K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTGELIKIASDLDIINKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           GQG EN+K +L ++ ++ + I+  +R + GLV ++
Sbjct: 316 GQGSENAKKYLADHPDVFDEIDHKVRVHYGLVEET 350


>gi|302872165|ref|YP_003840801.1| recA protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302575024|gb|ADL42815.1| recA protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 356

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/346 (57%), Positives = 269/346 (77%), Gaps = 2/346 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M  +D+ KAL+  + +I++ YGKGAIM+LG      E I+V+ +G+L LDIALG+GG P+
Sbjct: 1   MENLDRKKALDKVIMEIEKAYGKGAIMKLGEMAK--ENIDVIPTGALSLDIALGVGGVPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYG ESSGKTT+ALH IA++QK GG  AF+DAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 59  GRIVEIYGAESSGKTTIALHIIAEAQKMGGEAAFIDAEHALDPFYAKKLGVDINNLIVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+GEQALEI + LVRS A+D+IVIDSVAAL P+AEI+G+MGE+  G+QARLMSQALRKL
Sbjct: 119 PDSGEQALEIVEALVRSNAIDVIVIDSVAALVPQAEIDGEMGEAHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
               S++K  ++FINQ+R K+GVMFG+PETT GG ALKFY+SVRL++R+   IK +    
Sbjct: 179 AGITSKTKTTVIFINQLREKVGVMFGNPETTPGGRALKFYASVRLEVRKGEIIKSQGQPI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G++ +VKVVKNK+A PFK+ EFD++YGEGIS  G ++D+ V   ++ KSGAW+++ GQ++
Sbjct: 239 GSKVKVKVVKNKVAPPFKEAEFDLIYGEGISKEGNVLDVAVNIDVIQKSGAWYTYNGQKI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GQGREN+K FL+EN +I + I   +RQNA L  + +     I+ +D
Sbjct: 299 GQGRENAKQFLKENPDIMQEIIEKIRQNANLAFEKIKTTAEISDED 344


>gi|157100331|emb|CAP03331.1| RecA protein [Vibrio aestuarianus]
          Length = 278

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 187/280 (66%), Positives = 237/280 (84%), Gaps = 2/280 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTL 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA +Q+ G TCAF+DAEHALDSIYA+KLGVD+  LL+SQPDTGEQALEI D L RS
Sbjct: 59  TLELIAAAQRVGKTCAFIDAEHALDSIYAKKLGVDIDALLVSQPDTGEQALEICDALARS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GA+D+IV+DSVAALT +AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+
Sbjct: 119 GAIDVIVVDSVAALTXKAEIEGEMGDSXMGLQARMLSQAMRKLTGNLKQSNCMCIFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PF
Sbjct: 179 RMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
           KQ E  I+YG+G +  GEL+DLGVK  +V+K+GAW+S+ G
Sbjct: 239 KQAETQILYGQGFNREGELVDLGVKNKLVEKAGAWYSYNG 278


>gi|156067095|gb|ABR12765.2| recombinase A [Photobacterium indicum]
          Length = 278

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/280 (68%), Positives = 236/280 (84%), Gaps = 2/280 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGP
Sbjct: 1   LAAALGQIEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L TIA +Q+   TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLETIAAAQRVNKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGAVD+IVIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 ICDALARSGAVDLIVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           KNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +V+K+
Sbjct: 239 KNKIAAPFKQAETQILYGQGFNRNGELIDLGVKHKLVEKA 278


>gi|254430846|ref|ZP_05044549.1| protein RecA [Cyanobium sp. PCC 7001]
 gi|197625299|gb|EDY37858.1| protein RecA [Cyanobium sp. PCC 7001]
          Length = 419

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/320 (60%), Positives = 249/320 (77%), Gaps = 3/320 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL   L+QI+R +GKG+IM+LG    +   +E +S+G+L LD+ALG GG+PKGR+VE+Y
Sbjct: 48  KALGLVLNQIERNFGKGSIMRLGDASRMR--VETISTGALTLDLALG-GGYPKGRVVEVY 104

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTL LH IA+ QK GG  AFVDAEHALD +YA  LGVD++NLL+SQPDTGE A
Sbjct: 105 GPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAAALGVDIENLLVSQPDTGEMA 164

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI D LVRS AVDI+V+DSVAALTPRAEIEG+MG+   G QARLMSQA+RK+T +I +S
Sbjct: 165 LEIVDQLVRSAAVDIVVVDSVAALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNIGKS 224

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            C ++F+NQ+R KIGV +GSPETTTGGNALKFY+SVRLDIRR+ ++K      G + +VK
Sbjct: 225 GCTVIFLNQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRAKVK 284

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           V KNK+A PF+  EFDI++G GIS  G L+DL  +  +V + GAW+S++G  +GQGR+N+
Sbjct: 285 VAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVIRKGAWYSYEGDNIGQGRDNT 344

Query: 314 KIFLRENIEIAENIESLLRQ 333
             +L +N E AE IE   RQ
Sbjct: 345 ITWLEQNPEQAEEIERRTRQ 364


>gi|113953696|ref|YP_729672.1| recombinase A [Synechococcus sp. CC9311]
 gi|123327976|sp|Q0ID00|RECA_SYNS3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|113881047|gb|ABI46005.1| recA protein [Synechococcus sp. CC9311]
          Length = 382

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 192/323 (59%), Positives = 253/323 (78%), Gaps = 3/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+  L QI+R +GKG+IM+LG    +   +E +S+G+L LD+ALG GG+PKGR+V
Sbjct: 19  ERDKALDLVLGQIERNFGKGSIMRLGDASRMR--VETISTGALTLDLALG-GGYPKGRVV 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL LH IA+ QK GG  AFVDAEHALD +YA  LGVD++NLL+SQPDTG
Sbjct: 76  EVYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D LVRS AVDI+V+DSVAALTPRAEIEG+MG+   G QARLMSQA+RK+T +I
Sbjct: 136 EMALEIVDQLVRSAAVDIVVVDSVAALTPRAEIEGEMGDLAVGAQARLMSQAMRKITGNI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K      G + 
Sbjct: 196 GKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRA 255

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV KNK+A PF+  EFDI++G GIS  G ++DL  +  +V + GAW+S++G  +GQGR
Sbjct: 256 KVKVAKNKVAPPFRIAEFDILFGRGISTLGCVLDLAEETGVVTRKGAWYSYEGDNIGQGR 315

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           +N+  +L +N E  + IE L+RQ
Sbjct: 316 DNTIGWLEQNPEAKDAIEVLVRQ 338


>gi|58415325|emb|CAH57077.1| recA protein [Enterovibrio coralii]
          Length = 265

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 192/267 (71%), Positives = 230/267 (86%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   IE VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA+
Sbjct: 1   SIMRLGDDRTM--DIETVSTGSLSLDIALGAGGLPYGRIVEIYGPESSGKTTLTLQVIAE 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD +YARKL VD+ NLL+SQPDTGEQALEI D L RSGAVD+I+
Sbjct: 59  AQKQGKTCAFIDAEHALDPVYARKLHVDIDNLLVSQPDTGEQALEIADALTRSGAVDVII 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT++I  S  +++FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D + GN TRVKVVKNK+A+PFKQ EF I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEVVGNDTRVKVVKNKIAAPFKQAEFQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYGEGI+ +GELIDLGVK  +V+K+GA
Sbjct: 239 MYGEGINLYGELIDLGVKHKLVEKAGA 265


>gi|22299632|ref|NP_682879.1| recombinase A [Thermosynechococcus elongatus BP-1]
 gi|30173265|sp|Q8DH70|RECA_THEEB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|22295816|dbj|BAC09641.1| recombination protein [Thermosynechococcus elongatus BP-1]
          Length = 355

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/323 (60%), Positives = 252/323 (78%), Gaps = 3/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALE A+SQI+R +GKG+IM+LG   S+   +E +SSG+L LD+ALG GG PKGRI+
Sbjct: 12  EKRKALEFAISQIERSFGKGSIMRLGDATSM--KVETISSGALTLDLALG-GGLPKGRII 68

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH IA+ QK GG  AFVDAEHALD  YA  L VD++NLL++QPDTG
Sbjct: 69  EIYGPESSGKTTLALHAIAEVQKAGGVAAFVDAEHALDPTYAAALRVDIQNLLVAQPDTG 128

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D LVRS AVDIIV+DSVAAL PRAEIEGDMGES  G+QARLMSQALRK+  +I
Sbjct: 129 EAALEIVDQLVRSTAVDIIVVDSVAALVPRAEIEGDMGESHVGLQARLMSQALRKINGNI 188

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++ C ++F+NQ+R KIG+ +G+PETTTGG ALKFY+SVRLDIRRV ++K      G + 
Sbjct: 189 SKTGCTVIFLNQLRQKIGLTYGNPETTTGGVALKFYASVRLDIRRVQTLKKGTEEFGIRA 248

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV KNK+A PF+  EFDI++G+GI+  G ++D+  +  ++ + GAW+S+ G+ L QGR
Sbjct: 249 KVKVAKNKVAPPFRIAEFDIIFGKGIANLGCILDMAEEVGVITRKGAWYSYNGENLAQGR 308

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           +N+  ++ EN   A+ IE  +RQ
Sbjct: 309 DNTINYMEENPSFAQEIEQQVRQ 331


>gi|221194844|ref|ZP_03567901.1| protein RecA [Atopobium rimae ATCC 49626]
 gi|221185748|gb|EEE18138.1| protein RecA [Atopobium rimae ATCC 49626]
          Length = 364

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/330 (61%), Positives = 264/330 (80%), Gaps = 1/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ + LE   S+I++ +GKG+IM+LG  G  F+ I+ + +GS+ LD ALGIGG P+GRI+
Sbjct: 18  ERDQVLETTTSEIEKKFGKGSIMRLGDGGPSFD-IQSIPTGSIALDAALGIGGVPRGRII 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+L  +A++Q  GG  AF+DAEHALD  YA ++GVD+  +LISQPDTG
Sbjct: 77  EIYGPESSGKTTLSLEILAEAQALGGVVAFIDAEHALDPGYAARIGVDIDEVLISQPDTG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D++VIDSVAAL PRAEIEG++G+S  G+QARLMSQALRKL  S+
Sbjct: 137 EQALEICDMLVRSGAIDVVVIDSVAALVPRAEIEGEIGDSSVGLQARLMSQALRKLAGSL 196

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S    +FINQ+R KIGVMFG+PETT+GG ALKF+SSVR+DIRR+ SIK    + GN+ 
Sbjct: 197 SKSNTTCIFINQLREKIGVMFGNPETTSGGRALKFFSSVRMDIRRIDSIKVNGDVVGNRV 256

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDIMYG+GIS  G ++D+ V+  IV+KSG+WF+++G+RLGQGR
Sbjct: 257 RVKVVKNKVAPPFKQAEFDIMYGKGISKEGSILDMAVEEEIVNKSGSWFTYEGERLGQGR 316

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           E +K FL EN ++ E I+  +R   GL+ D
Sbjct: 317 EAAKTFLLENPQLMEEIDHKVRLAVGLIED 346


>gi|148879021|emb|CAM07026.1| RecA protein [Mycobacterium sp. MHSD4]
          Length = 286

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 186/279 (66%), Positives = 235/279 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAE
Sbjct: 8   ISVIPTGSISLDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 67

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA+KLGVD  +LL+SQPDTGEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIE
Sbjct: 68  HALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDILVIDSVAALVPRAEIE 127

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFGSPETTTGG ALK
Sbjct: 128 GEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALK 187

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
            Y+SVRLD+RR+ ++KD     GN+TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID
Sbjct: 188 XYASVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGQGISREGSLID 247

Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           +GV+   + KSG+WF+++G++LGQG+EN++ FL EN+++
Sbjct: 248 MGVEHGFIRKSGSWFTYEGEQLGQGKENARKFLLENVDV 286


>gi|148879023|emb|CAM07027.1| RecA protein [Mycobacterium sp. MHSD5]
 gi|148879025|emb|CAM07028.1| RecA protein [Mycobacterium sp. MHSD6]
          Length = 284

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 186/277 (67%), Positives = 233/277 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAE
Sbjct: 8   ISVIPTGSISLDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 67

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA+KLGVD  +LL+SQPDTGEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIE
Sbjct: 68  HALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDILVIDSVAALVPRAEIE 127

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFGSPETTTGG ALK
Sbjct: 128 GEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALK 187

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLD+RR+ ++KD     GN+TRVKVVKNK++ PFKQ EFDI+YG GIS  G LID
Sbjct: 188 FYASVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGHGISREGSLID 247

Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           +GV+   + KSG+WF+++G++LGQG+EN++ F+ EN+
Sbjct: 248 MGVEHGFIRKSGSWFTYEGEQLGQGKENARKFMLENV 284


>gi|166079847|gb|ABY81645.1| recombinase A [Staphylococcus hominis]
          Length = 320

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/314 (61%), Positives = 244/314 (77%), Gaps = 2/314 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKGA+M+LG             S +L  D ALG+GG+PKGRI+EIYGPESSGKTT+
Sbjct: 1   EKSFGKGAVMKLGDNKGRRVSSVSSGSVTL--DNALGVGGYPKGRIIEIYGPESSGKTTV 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALH IA+ QK GG  AF+DAEHALD +YA  LGVD+ NL +SQPD GEQ LEI +  VRS
Sbjct: 59  ALHAIAEVQKNGGVAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHGEQGLEIAEAFVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVDI+V+DSVAALTP+AEIEG+MG +  G+QARLMSQALRKL+ +IS+S    +FINQ+
Sbjct: 119 GAVDIVVVDSVAALTPKAEIEGEMGGTHVGLQARLMSQALRKLSGAISKSNTTAIFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T++KVVKNK+A PF
Sbjct: 179 REKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRTKIKVVKNKVAPPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           +  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G+R+GQG+EN K +L+EN +I
Sbjct: 239 RIAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGKENVKTYLKENPQI 298

Query: 324 AENIESLLRQNAGL 337
            + I+  LR+  G+
Sbjct: 299 KDEIDRKLREKLGI 312


>gi|304383346|ref|ZP_07365812.1| recombination protein A [Prevotella marshii DSM 16973]
 gi|304335514|gb|EFM01778.1| recombination protein A [Prevotella marshii DSM 16973]
          Length = 349

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/333 (63%), Positives = 269/333 (80%), Gaps = 4/333 (1%)

Query: 4   RKEMNIVD--KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           ++E N V   K KAL+AA+S+I++ +GKGAIM+LG +    E +E + +GS+ LD ALG+
Sbjct: 5   KEETNNVQEGKLKALQAAMSKIEKDFGKGAIMKLGDKQ--IENVETIPTGSIALDYALGV 62

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+P+GRI+EIYGPESSGKTTLALH IA++QK GG  AF+DAEHA D  YA+KLGVD+ N
Sbjct: 63  GGYPRGRIIEIYGPESSGKTTLALHAIAETQKAGGIAAFIDAEHAFDRFYAQKLGVDVDN 122

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L ISQPD GEQAL+I + L+RS A+DIIVIDSVAALTP+ EIEGDMGES  G+ ARLMSQ
Sbjct: 123 LWISQPDNGEQALDIAEQLIRSAAIDIIVIDSVAALTPKKEIEGDMGESNVGLHARLMSQ 182

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLTS+IS++K   +FINQMR KIG+ FG+PETTTGG ALKFY+SVR+DIR+V SIKD
Sbjct: 183 ALRKLTSNISKTKTTCIFINQMREKIGISFGNPETTTGGLALKFYASVRMDIRKVTSIKD 242

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            D++TGN  RVKVVKNK+A PF++ EF+I +GEGIS  GELIDLGV   I+ KSG+W+S+
Sbjct: 243 GDTVTGNLVRVKVVKNKVAPPFRKAEFEITFGEGISKIGELIDLGVAQDIIQKSGSWYSY 302

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
              +LGQGR+ +K  L +N E+ E IE+ ++++
Sbjct: 303 GSSKLGQGRDATKTLLSDNPELCEEIEARIKED 335


>gi|194477062|ref|YP_002049241.1| recombinase A [Paulinella chromatophora]
 gi|171192069|gb|ACB43031.1| recombinase A [Paulinella chromatophora]
          Length = 367

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/326 (59%), Positives = 257/326 (78%), Gaps = 3/326 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           ++ ++ KAL + LSQI+R +GKG+IM+LG    +   +E +S+G+L LD+ALG GG+PKG
Sbjct: 11  HVENRDKALSSVLSQIERNFGKGSIMRLGDATRMR--VETISTGALTLDLALG-GGYPKG 67

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R+VEIYGPESSGKTTL LH IA+ Q+ GG  AFVDAEHALD +YA  LGVD++NLLISQP
Sbjct: 68  RVVEIYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAAALGVDIENLLISQP 127

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGE ALEI D LVRSGA+DI+VIDSVAALTPRAEIEG+MG+   G QARLMSQA+RK+T
Sbjct: 128 DTGEMALEIVDQLVRSGAIDIVVIDSVAALTPRAEIEGEMGDVAMGSQARLMSQAMRKIT 187

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            +I +S C ++F+NQ+R+KIGV +G+PETT+GGNALKFY+SVRLDIRR  ++K      G
Sbjct: 188 GNIGKSGCTVIFLNQLRLKIGVTYGNPETTSGGNALKFYASVRLDIRRSQTLKRGTEEYG 247

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
            + +VKV KNK+A PF+  EFDI++G GIS  G L+DL  +  +V + GAW+S++G+ +G
Sbjct: 248 IRAKVKVAKNKVAPPFRVAEFDILFGSGISTLGCLLDLAEETGVVIRKGAWYSYEGENIG 307

Query: 308 QGRENSKIFLRENIEIAENIESLLRQ 333
           QGR+N+  +L  N E  + IE+++R+
Sbjct: 308 QGRDNTISWLEHNPESLKVIETIIRK 333


>gi|306517921|emb|CBL53384.1| recombination-repair protein [Photobacterium angustum]
          Length = 271

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/273 (69%), Positives = 233/273 (85%), Gaps = 2/273 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L T
Sbjct: 1   GKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLET 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQRKGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEICDALARSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 LIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKQAE 238

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             I+YG+G +  GELIDLGVK  +V+K+GAW+S
Sbjct: 239 TQILYGQGFNRNGELIDLGVKHKLVEKAGAWYS 271


>gi|255007982|ref|ZP_05280108.1| recombinase A [Bacteroides fragilis 3_1_12]
 gi|313145698|ref|ZP_07807891.1| recombinase A [Bacteroides fragilis 3_1_12]
 gi|313134465|gb|EFR51825.1| recombinase A [Bacteroides fragilis 3_1_12]
          Length = 347

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/326 (61%), Positives = 262/326 (80%), Gaps = 2/326 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           +M   +K KAL+AA+ +I++ +GKG+IM++G +       EV+ +GS+ L+ ALG+GG+P
Sbjct: 16  KMASSEKLKALQAAMDKIEKSFGKGSIMKMGEEVVEQV--EVIPTGSIALNAALGVGGYP 73

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL IS
Sbjct: 74  RGRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLFIS 133

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI + L+RS A+DIIV+DSVAALTP+AEIEGDMG++  G+QARLMSQALRK
Sbjct: 134 QPDNGEQALEIAEQLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRK 193

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LTS++S+++   VFINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR    IKD + +
Sbjct: 194 LTSAVSKTRTTCVFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQQIKDGEEV 253

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            G QT+VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG    I+ KSG+W+S+   +
Sbjct: 254 IGKQTKVKVVKNKVAPPFRKAEFDIMFGEGISHSGEIIDLGADLGIIKKSGSWYSYNDTK 313

Query: 306 LGQGRENSKIFLRENIEIAENIESLL 331
           LGQGR+ +K  + +N E+AE +E L+
Sbjct: 314 LGQGRDAAKQCIADNPELAEELEGLI 339


>gi|222528978|ref|YP_002572860.1| recA protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222455825|gb|ACM60087.1| recA protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 356

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/346 (57%), Positives = 268/346 (77%), Gaps = 2/346 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M  +DK KAL+  +  I++ YGKGAIM+LG      E I+V+ +G+L LDIALG+GG P+
Sbjct: 1   MENLDKKKALDKVIMDIEKAYGKGAIMKLGEMAK--ENIDVIPTGALSLDIALGVGGVPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYG ESSGKTT+ALH IA++QK GG  AF+DAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 59  GRIVEIYGAESSGKTTIALHIIAEAQKMGGEAAFIDAEHALDPFYAKKLGVDINNLIVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+GEQALEI + LVRS A+D+IVIDSVAAL P+AEI+G+MGE+  G+QARLMSQALRKL
Sbjct: 119 PDSGEQALEIVEALVRSNAIDVIVIDSVAALVPQAEIDGEMGEAHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
               S++K  ++FINQ+R K+G+MFG+PETT GG ALKFY+SVRL++R+   IK +    
Sbjct: 179 AGITSKTKTTVIFINQLREKVGIMFGNPETTPGGRALKFYASVRLEVRKGEIIKSQGQPI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G++ +VKVVKNK+A PFK+ EFD++YGEGIS  G ++D+ V   ++ KSGAW+++ GQ++
Sbjct: 239 GSKVKVKVVKNKVAPPFKEAEFDLIYGEGISKEGNVLDVAVNIDVIQKSGAWYTYNGQKI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GQGREN+K FL+EN +I + I   +RQNA L  + +     I+ +D
Sbjct: 299 GQGRENAKQFLKENPDIMQEIIEKIRQNANLAFEKIKTTAEISDED 344


>gi|257470667|ref|ZP_05634757.1| recA protein [Fusobacterium ulcerans ATCC 49185]
 gi|317064873|ref|ZP_07929358.1| recombinase A [Fusobacterium ulcerans ATCC 49185]
 gi|313690549|gb|EFS27384.1| recombinase A [Fusobacterium ulcerans ATCC 49185]
          Length = 363

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/333 (58%), Positives = 257/333 (77%), Gaps = 3/333 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +  K   + +K KALE A+ QI++ +G+G+IM+LG    +   IEV+S+GS+ LD ALG+
Sbjct: 6   NTEKNREVSEKEKALELAMKQIKKDFGEGSIMKLGDNQEM--NIEVISTGSINLDAALGL 63

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GR+VEIYG ESSGKTT+ALH  A++QK GG  AF+DAEHALD +YA+ LGVD+  
Sbjct: 64  GGVPRGRVVEIYGAESSGKTTIALHIAAEAQKAGGIVAFIDAEHALDPVYAKALGVDVDE 123

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLISQPD GEQALEI DMLVRSGAVD I++DSVAAL P+ EI+G+MG+   G+QARLMS+
Sbjct: 124 LLISQPDYGEQALEIADMLVRSGAVDAIIVDSVAALVPKVEIDGEMGDQQMGLQARLMSK 183

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           ALRKLT+++++SK  ++FINQ+R KIG   FG   TTTGG ALKFYSSVR++++R+GS+K
Sbjct: 184 ALRKLTATLNKSKTTMIFINQIRDKIGGFGFGPQTTTTGGKALKFYSSVRMEVKRIGSVK 243

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             D + GN+T VKV KNK+A PFK+  F IMYG+GIS  GE++D+ ++  IV KSGAWFS
Sbjct: 244 QGDEVIGNETVVKVTKNKIAPPFKEAAFQIMYGKGISRVGEILDMAIEKDIVAKSGAWFS 303

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           F   RLGQG+EN K+ L   +E+ E IE  +++
Sbjct: 304 FGDIRLGQGKENVKVRLETEVELLEKIEEEVKK 336


>gi|156067097|gb|ABR12767.2| recombinase A [Photobacterium angustum]
          Length = 278

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 192/280 (68%), Positives = 237/280 (84%), Gaps = 2/280 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGP
Sbjct: 1   LAAALGQIEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L TIA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLETIAAAQRKGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 ICDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           KNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +V+K+
Sbjct: 239 KNKIAAPFKQAETQILYGQGFNRNGELIDLGVKHKLVEKA 278


>gi|159146596|gb|ABW90742.1| recombinase A [Vibrio chagasii]
 gi|159146622|gb|ABW90755.1| recombinase A [Vibrio chagasii]
          Length = 278

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/280 (68%), Positives = 236/280 (84%), Gaps = 2/280 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGP
Sbjct: 1   LAAALGQIEKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 ICDALARSGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           KNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +VDK+
Sbjct: 239 KNKIAAPFKQAETQILYGQGFNREGELIDLGVKNKLVDKA 278


>gi|116617700|ref|YP_818071.1| RecA protein [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|116096547|gb|ABJ61698.1| RecA protein [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 385

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/347 (57%), Positives = 263/347 (75%), Gaps = 7/347 (2%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL+ AL +I++ +GKG++M LG        IE + SGS+ +D+ALG+GG+PKGRI+E+YG
Sbjct: 21  ALDEALKKIEKNFGKGSVMTLGDNA--LTQIETIPSGSVKIDVALGVGGYPKGRIIEVYG 78

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTT+ALH +A+ QK GGT A++DAE+ALD  YA  LGV    LL+SQPDTGEQ L
Sbjct: 79  PESSGKTTIALHAVAEVQKQGGTAAYIDAENALDVKYAEALGVKKDELLLSQPDTGEQGL 138

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EI D LV+SGAVD+IV+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL  +++R+ 
Sbjct: 139 EIADALVQSGAVDMIVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLAGTLNRTG 198

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
            I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   IKD   +TGN T+VK+
Sbjct: 199 TIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRSTQIKDGTDVTGNLTKVKI 258

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK+A PFK  E DIMYG GIS  GE++DL V   I+DK+GAW++++G+R+GQGRE +K
Sbjct: 259 VKNKVAPPFKVAEVDIMYGHGISQTGEILDLAVDQDIIDKAGAWYAYEGERIGQGREKAK 318

Query: 315 IFL--RENIEIAENIESLLRQNAGLVADSLLQEPAI-NTKDDADKDD 358
            +L   E+  + + +   +RQ  G+  DS     A+ NT+  A+K D
Sbjct: 319 DYLDDPEHAALRQELYVKVRQAYGI--DSNANGTAVSNTEAQAEKSD 363


>gi|58415333|emb|CAH57081.1| recA protein [Grimontia hollisae]
 gi|58415335|emb|CAH57082.1| recA protein [Grimontia hollisae]
 gi|58415337|emb|CAH57083.1| recA protein [Grimontia hollisae]
          Length = 265

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 192/267 (71%), Positives = 230/267 (86%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   IE VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA+
Sbjct: 1   SIMRLGDDRTM--DIETVSTGSLSLDIALGAGGLPYGRIVEIYGPESSGKTTLTLQVIAE 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD IYARKL VD+ NLL+SQPDTGEQALEI D L RSGAVD+I+
Sbjct: 59  AQKQGKTCAFIDAEHALDPIYARKLNVDIDNLLVSQPDTGEQALEIADALTRSGAVDVII 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT++I  S  +++FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D + GN TRVKVVKNK+A+PFKQ EF I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEVVGNDTRVKVVKNKIAAPFKQAEFQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YGEGI+ +GELIDLGVK  +V+K+GA
Sbjct: 239 LYGEGINLYGELIDLGVKHKLVEKAGA 265


>gi|306517923|emb|CBL53385.1| recombination-repair protein [Photobacterium halotolerans]
          Length = 272

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/274 (68%), Positives = 234/274 (85%), Gaps = 2/274 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L T
Sbjct: 1   GKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLET 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQRKGKTCAFIDAEHALDPIYAKKLGVDIDQLLVSQPDTGEQALEICDALARSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 MIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ +
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKQAD 238

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
             I+YG+G +  GELIDLGVK  +++K+GAW+S+
Sbjct: 239 TQILYGQGFNRNGELIDLGVKQKLIEKAGAWYSY 272


>gi|113476296|ref|YP_722357.1| recombinase A [Trichodesmium erythraeum IMS101]
 gi|123056586|sp|Q111E0|RECA_TRIEI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|110167344|gb|ABG51884.1| RecA protein [Trichodesmium erythraeum IMS101]
          Length = 360

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 191/324 (58%), Positives = 251/324 (77%), Gaps = 3/324 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL++ L  I++ +GKG+I++LG    +   +E +SSG+L LD+ALG GG PKGR++
Sbjct: 9   EKQKALDSVLKTIEKTFGKGSIVRLGDATRM--KVETISSGALTLDLALG-GGLPKGRVI 65

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH IA++QK+GG  AFVDAEHALD  YA  LGVD++NLL+SQPDTG
Sbjct: 66  EIYGPESSGKTTLALHAIAETQKSGGIAAFVDAEHALDPTYAAALGVDIENLLVSQPDTG 125

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALE+ D LVRS AVDI+V+DSVAAL PRAEIEGDMG+S  G+QARLMSQALRK+T +I
Sbjct: 126 EMALEVVDHLVRSVAVDIVVVDSVAALVPRAEIEGDMGDSHMGLQARLMSQALRKITGNI 185

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C +VF+NQ+R KIGV++G+PETTTGGNALKFY+SVRLDIRR  ++K      G   
Sbjct: 186 GKSGCTVVFLNQLRQKIGVVYGNPETTTGGNALKFYASVRLDIRRTQTLKKSSEEYGIHA 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV KNK+A PF+  EFDI++G+GIS  G +IDL  +  ++ + GAW+S++G    QGR
Sbjct: 246 KVKVAKNKVAPPFRVAEFDIIFGKGISNVGCIIDLAEETDVIKRKGAWYSYQGSNFAQGR 305

Query: 311 ENSKIFLRENIEIAENIESLLRQN 334
           E +  ++  NI+ A+ IE  +R +
Sbjct: 306 EKAIAYMESNIDFAKKIEKQVRDH 329


>gi|78211933|ref|YP_380712.1| recombinase A [Synechococcus sp. CC9605]
 gi|123770811|sp|Q3AMM5|RECA_SYNSC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|78196392|gb|ABB34157.1| recA protein [Synechococcus sp. CC9605]
          Length = 374

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 192/323 (59%), Positives = 252/323 (78%), Gaps = 3/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL   L QI+R +GKG+IM+LG    +   +E +S+G+L LD+ALG GG+PKGR+V
Sbjct: 17  ERDKALNLVLGQIERNFGKGSIMRLGDASRMR--VETISTGALTLDLALG-GGYPKGRVV 73

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG  AFVDAEHALD +YA  LGVD++NLL+SQPDTG
Sbjct: 74  EIYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTG 133

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D LVRS AVD++V+DSVAALTPRAEIEG+MG+   G QARLMSQA+RK+T +I
Sbjct: 134 EMALEIVDQLVRSAAVDLVVVDSVAALTPRAEIEGEMGDLAVGAQARLMSQAMRKITGNI 193

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K      G + 
Sbjct: 194 GKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKKGTEEFGIRA 253

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV KNK+A PF+  EFDI++G GIS  G L+DL  +  +V + GAW+S++G  +GQGR
Sbjct: 254 KVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVVRKGAWYSYEGDNIGQGR 313

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           +N+  ++ EN +    IE+L+RQ
Sbjct: 314 DNTISWMEENPDATATIETLVRQ 336


>gi|313679015|ref|YP_004056754.1| reca protein [Oceanithermus profundus DSM 14977]
 gi|313151730|gb|ADR35581.1| RecA protein [Oceanithermus profundus DSM 14977]
          Length = 335

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 191/320 (59%), Positives = 249/320 (77%), Gaps = 3/320 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL++ L QI++ +G GAIM+LG +    + +EV+ +GSL LD+ALGIGG P+GRI+
Sbjct: 5   ERQKALQSTLKQIEKRFGTGAIMRLGERPR--QEVEVIPTGSLALDLALGIGGIPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPES GKTTLALH +AQ+QK GG  AFVDAEHALD +YAR+LGVD+ NLL+SQPDTG
Sbjct: 63  EIYGPESGGKTTLALHIVAQAQKAGGVAAFVDAEHALDPVYARQLGVDVDNLLLSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI ++LVRSGAVD+IV+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKLT  +
Sbjct: 123 EQALEIVELLVRSGAVDVIVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTGVL 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQ 249
           S+S    +FINQ+R K+GVM+G+PE TTGG ALKFYSS+RLD+RR G  IK  D    N 
Sbjct: 183 SKSNTSAIFINQIREKVGVMYGNPEVTTGGRALKFYSSIRLDVRRKGQPIKKGDQPIANV 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            RVKV KNK+A PF++ E ++ +G GI    +L+ + V   +++KSG+WFS+   RLGQG
Sbjct: 243 VRVKVTKNKLAPPFREAELELYFGRGIDPVADLVTVAVDRGVIEKSGSWFSYGEVRLGQG 302

Query: 310 RENSKIFLRENIEIAENIES 329
           +E +  +LR N E+ E I +
Sbjct: 303 KEKAADYLRANPEMIEEIRA 322


>gi|299822960|ref|ZP_07054846.1| recombination protein A [Listeria grayi DSM 20601]
 gi|299816489|gb|EFI83727.1| recombination protein A [Listeria grayi DSM 20601]
          Length = 347

 Score =  401 bits (1031), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/347 (58%), Positives = 271/347 (78%), Gaps = 4/347 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG      + +  VSSGSL +D+ALG+GG+P+GR
Sbjct: 1   MTDRQVALDQALKQIEKQFGKGSIMKLGEHSD--QNVSTVSSGSLAIDVALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPD
Sbjct: 59  IIEIYGPESSGKTTVALHAIAEVQTQGGTAAFIDAEHALDPTYAKNLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDILVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I VFINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   +K    + GN
Sbjct: 179 AINKSKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGTEVIGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T+VKVVKNK+A PF+  E DIMYGEGIS  GEL+D+  +  +V+KSG+W+S+  +R+GQ
Sbjct: 239 KTKVKVVKNKVAPPFRVAEVDIMYGEGISREGELLDMASEVDVVNKSGSWYSYNEERIGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           GREN+K FL+E+ E+ + I   +R+   +   +++  PA  T++  D
Sbjct: 299 GRENAKQFLKEHAELLDEISKKVRREYDIDGTAVV--PAEETEETLD 343


>gi|227544214|ref|ZP_03974263.1| recombination protein A [Lactobacillus reuteri CF48-3A]
 gi|300908210|ref|ZP_07125676.1| recombination protein A [Lactobacillus reuteri SD2112]
 gi|227185807|gb|EEI65878.1| recombination protein A [Lactobacillus reuteri CF48-3A]
 gi|300894637|gb|EFK87993.1| recombination protein A [Lactobacillus reuteri SD2112]
          Length = 362

 Score =  401 bits (1031), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/342 (55%), Positives = 265/342 (77%), Gaps = 4/342 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ A+ +I++ +GKG+IM++G    +   +  VSSGSL +D ALGIGG+P+GRIVE
Sbjct: 5   RKAALDVAIRKIEKNFGKGSIMRMGDATDM--KVASVSSGSLAIDKALGIGGYPRGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH +A+ Q+ GGT A++DAE+ALD  YA  LGV++ +LL+SQPD+GE
Sbjct: 63  IYGPESSGKTTVALHAVAEVQRQGGTAAYIDAENALDPQYAEALGVNIDDLLLSQPDSGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           + LEI D L+ SGAVD++++DSVAAL PRAEI+GDMG++  G+QARLMSQALRKL+  I+
Sbjct: 123 EGLEIADALISSGAVDLVIVDSVAALVPRAEIDGDMGDTHVGLQARLMSQALRKLSGEIN 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++K I +FINQ+R K+GVMFG+PETTTGG ALKFYS++R++IRR   IK+   + GN+ +
Sbjct: 183 KTKTIAIFINQIREKVGVMFGNPETTTGGRALKFYSTIRMEIRRAEQIKNGTDVIGNKAK 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNK+A PFK+ E DIMYGEGIS  GEL+D+ V+  +VDKSGAW+S+  +R+GQGRE
Sbjct: 243 VKIVKNKVAPPFKRCEVDIMYGEGISKTGELLDMAVENDLVDKSGAWYSYGNERIGQGRE 302

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           N+K +L+E+ +    +   +R   G+  + L ++    T DD
Sbjct: 303 NAKKWLKEHPDSMNELMDKVRVANGM--EPLNEKSTKETADD 342


>gi|330836577|ref|YP_004411218.1| RecA protein [Spirochaeta coccoides DSM 17374]
 gi|329748480|gb|AEC01836.1| RecA protein [Spirochaeta coccoides DSM 17374]
          Length = 353

 Score =  401 bits (1031), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 204/341 (59%), Positives = 273/341 (80%), Gaps = 5/341 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N   K  A+E+A  QI + +GKG++M+LG   +    I  + SGSL LD ALG+GG+P+G
Sbjct: 15  NQKQKFDAIESARQQIDKQFGKGSLMKLGDNPTNLN-IATIPSGSLLLDEALGVGGYPRG 73

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTLALH IA++QK GG  AF+DAEHALD  YA+KLGVD   L ISQP
Sbjct: 74  RIVEIYGPESSGKTTLALHAIAEAQKAGGIAAFIDAEHALDPGYAKKLGVDTDGLWISQP 133

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI + LVRSGA+DIIV+DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT
Sbjct: 134 DTGEQALEIVESLVRSGAMDIIVVDSVAALTPQAEIEGDMGDSHMGLQARLMSQALRKLT 193

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI-KDKDSIT 246
             +++S+  ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD+R++ ++ K  D + 
Sbjct: 194 GILAKSRTTIIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDVRKIETLSKGADDVY 253

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G++ RVKVVKNK+A PF++VEFD+++GEGIS++G ++D  +K  +++KSG+W+S++G+++
Sbjct: 254 GSRVRVKVVKNKVAPPFRKVEFDMLFGEGISYYGGIMDAALKYEMIEKSGSWYSYQGEKI 313

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           GQG++N+  FL  N E++  +E+ LRQ   + A    +EPA
Sbjct: 314 GQGKDNAVSFLVANPEVSSELEARLRQKMFVPAS---EEPA 351


>gi|148238775|ref|YP_001224162.1| recombinase A [Synechococcus sp. WH 7803]
 gi|166220689|sp|A5GIV0|RECA_SYNPW RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|147847314|emb|CAK22865.1| RecA protein (recombinase A) [Synechococcus sp. WH 7803]
          Length = 382

 Score =  401 bits (1031), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 191/323 (59%), Positives = 253/323 (78%), Gaps = 3/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ +AL   L QI+R +GKG+IM+LG    +   +E +S+G+L LD+ALG GG+PKGR+V
Sbjct: 19  ERDQALNLVLGQIERNFGKGSIMRLGDASRMR--VETISTGALTLDLALG-GGYPKGRVV 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL LH IA+ Q+ GG  AFVDAEHALD +YA  LGVD++NLL+SQPDTG
Sbjct: 76  EVYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D LVRS AVDI+V+DSVAALTPRAEIEG+MG+   G QARLMSQA+RK+T +I
Sbjct: 136 EMALEIVDQLVRSAAVDIVVVDSVAALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K      G + 
Sbjct: 196 GKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRA 255

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV KNK+A PF+  EFDI++G GIS  G L+DL  +  +V + GAW+S++G  +GQGR
Sbjct: 256 KVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVTRKGAWYSYEGDNIGQGR 315

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           +N+  +L +N E  + IE+L+RQ
Sbjct: 316 DNTIGWLEQNPEAKDTIETLVRQ 338


>gi|53712505|ref|YP_098497.1| recombinase A [Bacteroides fragilis YCH46]
 gi|253563464|ref|ZP_04840921.1| recombinase A [Bacteroides sp. 3_2_5]
 gi|265762668|ref|ZP_06091236.1| recA protein [Bacteroides sp. 2_1_16]
 gi|52215370|dbj|BAD47963.1| RecA [Bacteroides fragilis YCH46]
 gi|251947240|gb|EES87522.1| recombinase A [Bacteroides sp. 3_2_5]
 gi|263255276|gb|EEZ26622.1| recA protein [Bacteroides sp. 2_1_16]
          Length = 347

 Score =  401 bits (1031), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/326 (61%), Positives = 262/326 (80%), Gaps = 2/326 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           +M   +K KAL+AA+ +I++ +GKG+IM++G +       EV+ +GS+ L+ ALG+GG+P
Sbjct: 16  KMASSEKLKALQAAMDKIEKSFGKGSIMKMGEEVVEQV--EVIPTGSIALNAALGVGGYP 73

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL IS
Sbjct: 74  RGRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLFIS 133

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI + L+RS A+DIIV+DSVAALTP+AEIEGDMG++  G+QARLMSQALRK
Sbjct: 134 QPDNGEQALEIAEQLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRK 193

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LTS++S+++   +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR    IKD + +
Sbjct: 194 LTSAVSKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQQIKDGEEV 253

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            G QT+VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG    I+ KSG+W+S+   +
Sbjct: 254 IGKQTKVKVVKNKVAPPFRKAEFDIMFGEGISHSGEIIDLGADLGIIKKSGSWYSYNDTK 313

Query: 306 LGQGRENSKIFLRENIEIAENIESLL 331
           LGQGR+ +K  + +N E+AE +E L+
Sbjct: 314 LGQGRDAAKQCIADNPELAEELEGLI 339


>gi|229269495|ref|YP_210849.2| recombinase A [Bacteroides fragilis NCTC 9343]
          Length = 347

 Score =  401 bits (1031), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/326 (61%), Positives = 262/326 (80%), Gaps = 2/326 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           +M   +K KAL+AA+ +I++ +GKG+IM++G +       EV+ +GS+ L+ ALG+GG+P
Sbjct: 16  KMASSEKLKALQAAMDKIEKSFGKGSIMKMGEEVVEQV--EVIPTGSIALNAALGVGGYP 73

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL IS
Sbjct: 74  RGRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLFIS 133

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI + L+RS A+DIIV+DSVAALTP+AEIEGDMG++  G+QARLMSQALRK
Sbjct: 134 QPDNGEQALEIAEQLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRK 193

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LTS++S+++   +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR    IKD + +
Sbjct: 194 LTSAVSKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQQIKDGEEV 253

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            G QT+VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG    I+ KSG+W+S+   +
Sbjct: 254 IGKQTKVKVVKNKVAPPFRKAEFDIMFGEGISHSGEIIDLGADLGIIKKSGSWYSYNDTK 313

Query: 306 LGQGRENSKIFLRENIEIAENIESLL 331
           LGQGR+ +K  + +N E+AE +E L+
Sbjct: 314 LGQGRDAAKQCIADNPELAEELEGLI 339


>gi|166079851|gb|ABY81647.1| recombinase A [Staphylococcus caprae]
          Length = 320

 Score =  401 bits (1031), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/314 (62%), Positives = 250/314 (79%), Gaps = 2/314 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKGA+M+LG        +   SSGS+ +D ALG+GG+PKGRI+EIYGPESSGKTT+
Sbjct: 1   EKSFGKGAVMKLGDNKG--RRVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTV 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALH IA+ QK GG  AF+DAEHALD +YA+ LGVD+ NL +SQPD GEQ LEI +  VRS
Sbjct: 59  ALHAIAEVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +IS+S    +FINQ+
Sbjct: 119 GAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAISKSNTTAIFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T++KVVKNK+A PF
Sbjct: 179 REKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRTKIKVVKNKVAPPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           +  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G+R+GQG+EN K +L+EN +I
Sbjct: 239 RVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGKENVKNYLKENPQI 298

Query: 324 AENIESLLRQNAGL 337
            E I+  LR+  G+
Sbjct: 299 KEEIDRKLREKLGI 312


>gi|211907502|gb|ACJ12280.1| RecA [Vibrio sp. cn83]
          Length = 278

 Score =  401 bits (1031), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/280 (67%), Positives = 237/280 (84%), Gaps = 2/280 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGP
Sbjct: 1   LAAALGQIEKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA +QK G TCAF+DAEHALD +YA++LGVD+  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLECIAAAQKAGKTCAFIDAEHALDPVYAKRLGVDIDALLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 ICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           KNK+A+PFKQ E  I+YG+G + +GELIDLGVK  +V+K+
Sbjct: 239 KNKIAAPFKQAETQILYGQGFNRYGELIDLGVKNKLVEKA 278


>gi|179185392|gb|ACB78180.1| RecA [Vibrio gallaecicus]
          Length = 279

 Score =  401 bits (1031), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/281 (67%), Positives = 237/281 (84%), Gaps = 2/281 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           +++ +GKG+IM+LG   ++   +E +S+GSL LD+ALG GG P GRIVE+YGPESSGKTT
Sbjct: 1   LKKQFGKGSIMRLGDNRTM--DVETISTGSLSLDVALGAGGLPMGRIVEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L R
Sbjct: 59  LTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALAR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGA+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 119 SGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQ 178

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+P
Sbjct: 179 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAP 238

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
           FKQ E  I+YG+G +  GELIDLGVK  +VDK+GA +S+ G
Sbjct: 239 FKQAETQILYGQGFNREGELIDLGVKNKLVDKAGARYSYNG 279


>gi|194468320|ref|ZP_03074306.1| recA protein [Lactobacillus reuteri 100-23]
 gi|194453173|gb|EDX42071.1| recA protein [Lactobacillus reuteri 100-23]
          Length = 362

 Score =  401 bits (1031), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/342 (55%), Positives = 265/342 (77%), Gaps = 4/342 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ A+ +I++ +GKG+IM++G    +   +  VSSGSL +D ALGIGG+P+GRIVE
Sbjct: 5   RKAALDVAIRKIEKNFGKGSIMRMGDATDM--KVASVSSGSLAIDKALGIGGYPRGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH +A+ Q+ GGT A++DAE+ALD  YA  LGV++ +LL+SQPD+GE
Sbjct: 63  IYGPESSGKTTVALHAVAEVQRQGGTAAYIDAENALDPQYAEALGVNIDDLLLSQPDSGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           + LEI D L+ SGAVD++++DSVAAL PRAEI+GDMG++  G+QARLMSQALRKL+  I+
Sbjct: 123 EGLEIADALISSGAVDLVIVDSVAALVPRAEIDGDMGDTHVGLQARLMSQALRKLSGEIN 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++K I +FINQ+R K+GVMFG+PETTTGG ALKFYS++R++IRR   IK+   + GN+ +
Sbjct: 183 KTKTIAIFINQIREKVGVMFGNPETTTGGRALKFYSTIRMEIRRAEQIKNGTDVIGNKAK 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNK+A PFK+ E DIMYGEGIS  GEL+D+ V+  +VDKSGAW+S+  +R+GQGRE
Sbjct: 243 VKIVKNKVAPPFKRCEVDIMYGEGISKTGELLDMAVENDLVDKSGAWYSYGSERIGQGRE 302

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           N+K +L+E+ +    +   +R   G+  + L ++    T DD
Sbjct: 303 NAKKWLKEHPDSMNELMDKVRVANGM--EPLNEKSTKETTDD 342


>gi|260434418|ref|ZP_05788388.1| protein RecA [Synechococcus sp. WH 8109]
 gi|260412292|gb|EEX05588.1| protein RecA [Synechococcus sp. WH 8109]
          Length = 370

 Score =  401 bits (1031), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 192/323 (59%), Positives = 252/323 (78%), Gaps = 3/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL   L QI+R +GKG+IM+LG    +   +E +S+G+L LD+ALG GG+PKGR+V
Sbjct: 13  ERDKALNLVLGQIERNFGKGSIMRLGDASRMR--VETISTGALTLDLALG-GGYPKGRVV 69

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG  AFVDAEHALD +YA  LGVD++NLL+SQPDTG
Sbjct: 70  EIYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTG 129

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D LVRS AVD++V+DSVAALTPRAEIEG+MG+   G QARLMSQA+RK+T +I
Sbjct: 130 EMALEIVDQLVRSAAVDLVVVDSVAALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNI 189

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K      G + 
Sbjct: 190 GKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKKGTEEFGIRA 249

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV KNK+A PF+  EFDI++G GIS  G L+DL  +  +V + GAW+S++G  +GQGR
Sbjct: 250 KVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVVRKGAWYSYEGDNIGQGR 309

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           +N+  ++ EN +    IE+L+RQ
Sbjct: 310 DNTISWMEENPDATATIETLVRQ 332


>gi|168484239|ref|ZP_02709191.1| protein RecA [Streptococcus pneumoniae CDC1873-00]
 gi|172042496|gb|EDT50542.1| protein RecA [Streptococcus pneumoniae CDC1873-00]
          Length = 388

 Score =  401 bits (1030), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/358 (55%), Positives = 271/358 (75%), Gaps = 7/358 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  EREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     K++  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKETNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAW+S+K +++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV-ADSLLQEPAINTKDDADKDDTDNVE 363
           GQG EN+K +L E+ EI + I+  +R   GL+  + + ++   N KD+  K++T N E
Sbjct: 316 GQGSENAKKYLAEHPEIFDEIDKQVRSKFGLIDGEEVSEQDTENKKDEPKKEETVNEE 373


>gi|148543758|ref|YP_001271128.1| recombinase A [Lactobacillus reuteri DSM 20016]
 gi|184153164|ref|YP_001841505.1| recombinase A [Lactobacillus reuteri JCM 1112]
 gi|227363262|ref|ZP_03847394.1| recombination protein A [Lactobacillus reuteri MM2-3]
 gi|325682130|ref|ZP_08161648.1| recombination protein A [Lactobacillus reuteri MM4-1A]
 gi|166918712|sp|A5VIW7|RECA_LACRD RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|229892800|sp|B2G6E3|RECA_LACRJ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|148530792|gb|ABQ82791.1| RecA protein [Lactobacillus reuteri DSM 20016]
 gi|183224508|dbj|BAG25025.1| recombinase RecA [Lactobacillus reuteri JCM 1112]
 gi|227071718|gb|EEI10009.1| recombination protein A [Lactobacillus reuteri MM2-3]
 gi|324978774|gb|EGC15723.1| recombination protein A [Lactobacillus reuteri MM4-1A]
          Length = 362

 Score =  401 bits (1030), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/342 (55%), Positives = 265/342 (77%), Gaps = 4/342 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ A+ +I++ +GKG+IM++G    +   +  VSSGSL +D ALGIGG+P+GRIVE
Sbjct: 5   RKAALDVAIRKIEKNFGKGSIMRMGDATDM--KVASVSSGSLAIDKALGIGGYPRGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH +A+ Q+ GGT A++DAE+ALD  YA  LGV++ +LL+SQPD+GE
Sbjct: 63  IYGPESSGKTTVALHAVAEVQRQGGTAAYIDAENALDPQYAEALGVNIDDLLLSQPDSGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           + LEI D L+ SGAVD++++DSVAAL PRAEI+GDMG++  G+QARLMSQALRKL+  I+
Sbjct: 123 EGLEIADALISSGAVDLVIVDSVAALVPRAEIDGDMGDTHVGLQARLMSQALRKLSGEIN 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++K I +FINQ+R K+GVMFG+PETTTGG ALKFYS++R++IRR   IK+   + GN+ +
Sbjct: 183 KTKTIAIFINQIREKVGVMFGNPETTTGGRALKFYSTIRMEIRRAEQIKNGTDVIGNKAK 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNK+A PFK+ E DIMYGEGIS  GEL+D+ V+  +VDKSGAW+S+  +R+GQGRE
Sbjct: 243 VKIVKNKVAPPFKRCEVDIMYGEGISKTGELLDMAVENDLVDKSGAWYSYGSERIGQGRE 302

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           N+K +L+E+ +    +   +R   G+  + L ++    T DD
Sbjct: 303 NAKKWLKEHPDSMNELMDKVRVANGM--EPLNEKSTKETADD 342


>gi|227432430|ref|ZP_03914418.1| recombination protein A [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227351796|gb|EEJ42034.1| recombination protein A [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 385

 Score =  401 bits (1030), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/347 (57%), Positives = 263/347 (75%), Gaps = 7/347 (2%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL+ AL +I++ +GKG++M LG        IE + SGS+ +D+ALG+GG+PKGRI+E+YG
Sbjct: 21  ALDEALKKIEKNFGKGSVMTLGDNA--LTQIETIPSGSVKIDVALGVGGYPKGRIIEVYG 78

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTT+ALH +A+ QK GGT A++DAE+ALD  YA  LGV    LL+SQPDTGEQ L
Sbjct: 79  PESSGKTTIALHAVAEVQKQGGTAAYIDAENALDVKYAEALGVKKDELLLSQPDTGEQGL 138

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EI D LV+SGAVD+IV+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL  +++R+ 
Sbjct: 139 EIADALVQSGAVDMIVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLAGTLNRTG 198

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
            I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   IKD   +TGN T+VK+
Sbjct: 199 TIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRSTQIKDGTDVTGNLTKVKI 258

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK+A PFK  E DIMYG GIS  GE++DL V   I+DK+GAW++++G+R+GQGRE +K
Sbjct: 259 VKNKVAPPFKVAEVDIMYGHGISQTGEILDLAVDQDIIDKAGAWYAYEGERIGQGREKAK 318

Query: 315 IFL--RENIEIAENIESLLRQNAGLVADSLLQEPAI-NTKDDADKDD 358
            +L   E+  + + +   +RQ  G+  DS     A+ NT+  A+K D
Sbjct: 319 DYLDDPEHSALRQELYVKVRQAYGI--DSNANGTAVSNTEAQAEKSD 363


>gi|158338580|ref|YP_001519757.1| recombinase A [Acaryochloris marina MBIC11017]
 gi|158308821|gb|ABW30438.1| protein RecA [Acaryochloris marina MBIC11017]
          Length = 350

 Score =  401 bits (1030), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 192/332 (57%), Positives = 255/332 (76%), Gaps = 3/332 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + +K KAL+  L  ++R +GKG+IM+LG    +   +E +SSG+L LD+ALG GG P+GR
Sbjct: 7   VSEKQKALDLVLKNVERSFGKGSIMRLGDAARM--QVETISSGALTLDLALG-GGLPRGR 63

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EIYGPESSGKTT+ALH IAQ QK GG  AFVDAEHALD +YA  LGVD+  LL+SQPD
Sbjct: 64  VIEIYGPESSGKTTVALHAIAQIQKNGGVAAFVDAEHALDPVYAAALGVDVSELLVSQPD 123

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           +GE ALEI D LVRS AVD++V+DSVAALTPRAEIEGDMG+S  G+QARLMSQALRK+TS
Sbjct: 124 SGEMALEIVDQLVRSSAVDLVVVDSVAALTPRAEIEGDMGDSHMGLQARLMSQALRKITS 183

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I +S   ++F+NQ+R KIGV +GSPE TTGGNALKFY+SVRLDIRR+ ++K    + G 
Sbjct: 184 NICKSGSTVIFLNQLRQKIGVTYGSPEVTTGGNALKFYASVRLDIRRIQTLKKGTEMYGI 243

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + +VKV KNK+A PF+  EFDI++G+GIS  G L+D+  + +I+ + GAW+SF G  +GQ
Sbjct: 244 RAKVKVAKNKVAPPFRIAEFDILFGQGISTLGCLVDMAEETNIIVRKGAWYSFDGNNIGQ 303

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           GR+N+  +  +N E  +++E  +RQ   L A+
Sbjct: 304 GRDNTIQYFADNPEFTDSVEQQVRQRLELGAE 335


>gi|322386551|ref|ZP_08060178.1| recombination protein A [Streptococcus cristatus ATCC 51100]
 gi|321269470|gb|EFX52403.1| recombination protein A [Streptococcus cristatus ATCC 51100]
          Length = 382

 Score =  401 bits (1030), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/341 (57%), Positives = 263/341 (77%), Gaps = 9/341 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGAIM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++VIDSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD----KDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KD+  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDAKDTNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GELI +     I+ K+GAW+S+  +++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           GQG EN+K +L ++ E+ + I+  +R + GL+ D    EPA
Sbjct: 316 GQGSENAKKYLADHPEVFDEIDRQVRVHYGLIEDD---EPA 353


>gi|325681372|ref|ZP_08160898.1| RecA protein [Ruminococcus albus 8]
 gi|324106862|gb|EGC01152.1| RecA protein [Ruminococcus albus 8]
          Length = 399

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/324 (59%), Positives = 253/324 (78%), Gaps = 5/324 (1%)

Query: 8   NIVD---KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           NI D   K KALE A++ I++ +GKGAIM+LG   ++   +E + +GS+ LD+ALGIGG 
Sbjct: 16  NITDADEKKKALETAIAYIEKQFGKGAIMKLGDARAM--DVEAIPTGSMTLDMALGIGGV 73

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GRI+EIYGPESSGKTT+ALH IA++QK GG  AF+D EHALD +YA+ LGVD+ ++L+
Sbjct: 74  PRGRIIEIYGPESSGKTTVALHIIAETQKMGGEVAFIDVEHALDPVYAQNLGVDIDSMLV 133

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD+GEQALEI + L RSGA+D IVIDSVAA+  +AEI+G+MG++  G  ARLMSQA+R
Sbjct: 134 SQPDSGEQALEIAEALARSGAIDCIVIDSVAAMVTKAEIDGEMGDTHVGQLARLMSQAMR 193

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLTS +S+S    VFINQ+R KIGVM+G+PETT GG ALKFY+SVR+++RR   IKD   
Sbjct: 194 KLTSVVSKSNTTCVFINQVREKIGVMYGNPETTPGGRALKFYASVRIEVRRGEQIKDGGE 253

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + GN+TR KVVKNK+A PFK+ EFDIMYG+G+S  GE++D  V   IV K GAWFS++  
Sbjct: 254 VIGNRTRCKVVKNKVAPPFKECEFDIMYGKGVSRVGEILDAAVDLGIVKKGGAWFSYEDY 313

Query: 305 RLGQGRENSKIFLRENIEIAENIE 328
           +LGQGR+NSK FL ++ ++   IE
Sbjct: 314 KLGQGRDNSKQFLLDHPDVMAEIE 337


>gi|116075773|ref|ZP_01473032.1| recombinase A [Synechococcus sp. RS9916]
 gi|116067088|gb|EAU72843.1| recombinase A [Synechococcus sp. RS9916]
          Length = 394

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/323 (59%), Positives = 251/323 (77%), Gaps = 3/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL   L QI+R +GKG+IM+LG    +   +E + +G+L LD+ALG GG+PKGR+V
Sbjct: 19  DRDKALNLVLGQIERNFGKGSIMRLGDASRMR--VETIPTGALTLDLALG-GGYPKGRVV 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL LH IA+ QK GG  AFVDAEHALD +YA  LGVD++NLL+SQPDTG
Sbjct: 76  EVYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D LVRS AVDI+V+DSVAALTPRAEIEG+MG+   G QARLMSQA+RK+T +I
Sbjct: 136 EMALEIVDQLVRSAAVDIVVVDSVAALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K      G + 
Sbjct: 196 GKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRA 255

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV KNK+A PF+  EFDI++G GIS  G L+DL  +  +V + GAW+S++G  +GQGR
Sbjct: 256 KVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVIRKGAWYSYEGDNIGQGR 315

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           +N+  +L +N E  + IE L+RQ
Sbjct: 316 DNTIGWLEQNPEAKDAIEVLVRQ 338


>gi|291556573|emb|CBL33690.1| protein RecA [Eubacterium siraeum V10Sc8a]
          Length = 419

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 187/324 (57%), Positives = 254/324 (78%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+ A+ QI + YG+GA+M LG +G+    +E V +GS+GLD ALGIGG PKGRI+
Sbjct: 21  EKKKALDTAMEQIIKNYGQGAVMFLGGEGNKKLDVESVPTGSIGLDYALGIGGLPKGRII 80

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPES GKTT+ LH IA++QK GG  AF+D EHALD +YA+ LGVD+ +L++SQPDTG
Sbjct: 81  EIYGPESGGKTTVTLHAIAETQKLGGMAAFIDVEHALDPVYAKSLGVDIDHLIVSQPDTG 140

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L RSGA+DI+V+DSVAA+  +AEI+G++G+S  G+QARLMS A+RKLTS I
Sbjct: 141 EQALEIMETLARSGAIDIVVLDSVAAMVTKAEIDGEIGDSFVGVQARLMSAAMRKLTSVI 200

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S  + +FINQ+R KIGVM+G+PETT GG ALKFY+SVR+++R+   I D   I G  T
Sbjct: 201 SKSNTVAIFINQVREKIGVMYGNPETTPGGRALKFYASVRIEVRKGEKIVDDGEIIGYTT 260

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           + KVVKNK+A PFK+ +FD+++GEGIS  GE+I +G +   + KSGAW+S+ G+RLGQG+
Sbjct: 261 KCKVVKNKVAPPFKETQFDMIFGEGISRLGEIITMGEELGFIKKSGAWYSYNGERLGQGK 320

Query: 311 ENSKIFLRENIEIAENIESLLRQN 334
           E +K FL+EN ++   IE  +++N
Sbjct: 321 EKTKKFLKENDDLRLEIEGKIKEN 344


>gi|158340276|ref|YP_001521446.1| recombinase A [Acaryochloris marina MBIC11017]
 gi|158310517|gb|ABW32132.1| protein RecA [Acaryochloris marina MBIC11017]
          Length = 357

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/333 (57%), Positives = 255/333 (76%), Gaps = 5/333 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M  + EM   +K KAL+  +  +++ +GKGAIM+LG    +   IE  SSG+L LD+ALG
Sbjct: 1   MSAKNEMT--EKQKALDLVMKNVEKTFGKGAIMRLGDATRM--QIETNSSGALTLDLALG 56

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG P+GR++EIYGPESSGKTT+ALH I+Q QKTGG  AFVDAEHALD +YA  LGVD+ 
Sbjct: 57  -GGLPRGRVIEIYGPESSGKTTVALHAISQIQKTGGVAAFVDAEHALDPVYAAALGVDIS 115

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPD+GE ALEI D LVRS AVD++V+DSVAALTPRAEIEGDMG+S  G+QARLMS
Sbjct: 116 ELLVSQPDSGEMALEIVDQLVRSSAVDLVVVDSVAALTPRAEIEGDMGDSHMGLQARLMS 175

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRK+TS+I++S   ++F+NQ+R KIGV +GSPE TTGGNALKFY+SVRLDIRR+ ++K
Sbjct: 176 QALRKITSNIAKSGSTVIFLNQLRQKIGVTYGSPEVTTGGNALKFYASVRLDIRRIQTLK 235

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
               + G + +VKV KNK+A PF+  EFDI++G+GIS  G L+D+  +  I+ + GAW+S
Sbjct: 236 KGTDMYGIRAKVKVAKNKVAPPFRIAEFDILFGQGISTMGCLVDMAEETDIIVRKGAWYS 295

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           + G  +GQGREN+  +  +N E ++ +E  +RQ
Sbjct: 296 YDGSNIGQGRENTIHYFLDNPEFSQEVEQQVRQ 328


>gi|289168670|ref|YP_003446939.1| RecA protein [Streptococcus mitis B6]
 gi|288908237|emb|CBJ23079.1| RecA protein [Streptococcus mitis B6]
          Length = 384

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/357 (56%), Positives = 270/357 (75%), Gaps = 9/357 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  EREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KD+  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIKGTGDQKDTNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAW+S+K +++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           GQG EN+K +L +N E+ + I+  +R   GL+     +E A N KD+A + D+ N E
Sbjct: 316 GQGSENAKKYLADNPEVFDEIDHQVRVQFGLIDG---EEAAENKKDEAAQVDSVNEE 369


>gi|322517661|ref|ZP_08070526.1| recombination protein A [Streptococcus vestibularis ATCC 49124]
 gi|322123738|gb|EFX95323.1| recombination protein A [Streptococcus vestibularis ATCC 49124]
          Length = 379

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/363 (55%), Positives = 273/363 (75%), Gaps = 12/363 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+G+MFG+PETT GG ALKFY+SVRLD+R    IK     KD   
Sbjct: 196 NKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDKKDQNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDLGIIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV---ADSLLQEPAI-NTKDD--ADKDDTD 360
           GQG EN+K +L ++ EI E I+  +R + GL+    D +L+   + +T DD   D D T 
Sbjct: 316 GQGSENAKKYLADHPEIFEEIDHKVRVHYGLIETDEDDVLEGTQVEDTADDLVLDLDSTI 375

Query: 361 NVE 363
            +E
Sbjct: 376 EIE 378


>gi|167750129|ref|ZP_02422256.1| hypothetical protein EUBSIR_01098 [Eubacterium siraeum DSM 15702]
 gi|167656872|gb|EDS01002.1| hypothetical protein EUBSIR_01098 [Eubacterium siraeum DSM 15702]
          Length = 419

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 187/324 (57%), Positives = 254/324 (78%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+ A+ QI + YG+GA+M LG +G+    +E V +GS+GLD ALGIGG PKGRI+
Sbjct: 21  EKKKALDTAMEQIIKNYGQGAVMFLGGEGNKKLDVESVPTGSIGLDYALGIGGLPKGRII 80

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPES GKTT+ LH IA++QK GG  AF+D EHALD +YA+ LGVD+ +L++SQPDTG
Sbjct: 81  EIYGPESGGKTTVTLHAIAETQKLGGMAAFIDVEHALDPVYAKSLGVDIDHLIVSQPDTG 140

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L RSGA+DI+V+DSVAA+  +AEI+G++G+S  G+QARLMS A+RKLTS I
Sbjct: 141 EQALEIMETLARSGAIDIVVLDSVAAMVTKAEIDGEIGDSFVGVQARLMSAAMRKLTSVI 200

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S  + +FINQ+R KIGVM+G+PETT GG ALKFY+SVR+++R+   I D   I G  T
Sbjct: 201 SKSNTVAIFINQVREKIGVMYGNPETTPGGRALKFYASVRIEVRKGEKIVDDGEIIGYTT 260

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           + KVVKNK+A PFK+ +FD+++GEGIS  GE+I +G +   + KSGAW+S+ G+RLGQG+
Sbjct: 261 KCKVVKNKVAPPFKETQFDMIFGEGISRLGEIITMGEELGFIKKSGAWYSYNGERLGQGK 320

Query: 311 ENSKIFLRENIEIAENIESLLRQN 334
           E +K FL+EN ++   IE  +++N
Sbjct: 321 EKTKKFLKENDDLRLEIEGKIKEN 344


>gi|325145697|gb|ADY86118.1| RecA [Burkholderia sp. A-10.3]
          Length = 338

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/327 (61%), Positives = 247/327 (75%), Gaps = 1/327 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEI
Sbjct: 1   SKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSG++  IVIDSVAAL P+AEIE                            
Sbjct: 120 ALEITDALVRSGSIXXIVIDSVAALVPKAEIEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 179

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
                   N +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRV
Sbjct: 180 XXXXXXXXNXIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK++ PF++  FDI+YGEGIS  GE+ DLGV+A IVDK+GAW+S+ G+++GQG++N
Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIXDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299

Query: 313 SKIFLRENIEIAENIESLLRQNAGLVA 339
           ++ FLREN EIA  IE+ +R++ G+ A
Sbjct: 300 AREFLRENPEIAREIENRIRESLGVAA 326


>gi|152976145|ref|YP_001375662.1| recombinase A [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|189039589|sp|A7GRA9|RECA_BACCN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|152024897|gb|ABS22667.1| recA protein [Bacillus cytotoxicus NVH 391-98]
          Length = 343

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/331 (60%), Positives = 265/331 (80%), Gaps = 2/331 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM++G Q      +  V SGSL LD+ALG+GG+P+GRI+
Sbjct: 3   DRQAALDMALKQIEKQFGKGSIMKMGEQAE--RKVSTVPSGSLSLDVALGVGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPDTG
Sbjct: 61  EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI + LVRSGA+DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQGLEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   +K  + I GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQLKQGNEIVGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF+  E DIMYGEGIS  GE++D+  +  IV KSGAW+++  +RLGQGR
Sbjct: 241 KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYAYNEERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           EN+K FL+EN +I + I   +R++ G+  DS
Sbjct: 301 ENAKQFLKENPDIRDEIAFFIREHHGIGEDS 331


>gi|89143243|emb|CAJ57516.1| recombinase A [Microbacterium flavescens]
          Length = 282

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/279 (67%), Positives = 231/279 (82%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GS+ LD+ALGIGG P+GRI+EIYGPESSGKTTL LH IA  Q+ GG  AF+DAEHALD 
Sbjct: 2   TGSIALDVALGIGGLPRGRIIEIYGPESSGKTTLTLHAIANVQRAGGIAAFIDAEHALDP 61

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
            YA+KLGVD+ +LL+SQPDTGEQALEI DMLVRSGA+D++VIDSVAAL P+AEIEG+MG+
Sbjct: 62  DYAQKLGVDIDSLLVSQPDTGEQALEIADMLVRSGAIDLVVIDSVAALVPKAEIEGEMGD 121

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           S  G+QARLMSQALRKLT  ++++   ++FINQ+R KIGV FGSPETT GG ALKFY+SV
Sbjct: 122 SHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLREKIGVFFGSPETTAGGKALKFYASV 181

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
           RLDIRR+ ++KD     GN+TRVKVVKNKMA PFKQ EFDI+YG GIS  G LID GV+ 
Sbjct: 182 RLDIRRIETLKDGTDAVGNRTRVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDFGVEH 241

Query: 290 SIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
            IV KSGAW+++ G++LGQG+EN++ FL +N + A  IE
Sbjct: 242 GIVKKSGAWYTYDGEQLGQGKENARNFLIKNADTAAEIE 280


>gi|322374227|ref|ZP_08048759.1| protein RecA [Streptococcus sp. C150]
 gi|321276831|gb|EFX53904.1| protein RecA [Streptococcus sp. C150]
          Length = 379

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/332 (57%), Positives = 259/332 (78%), Gaps = 6/332 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+G+MFG+PETT GG ALKFY+SVRLD+R    IK     KD   
Sbjct: 196 NKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDKKDQNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDLGIIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338
           GQG EN+K +L ++ EI E I+  +R + GL+
Sbjct: 316 GQGSENAKKYLADHPEIFEEIDHKVRVHYGLI 347


>gi|157100335|emb|CAP03333.1| RecA protein [Vibrio aestuarianus]
          Length = 278

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 186/280 (66%), Positives = 236/280 (84%), Gaps = 2/280 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTL 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RS
Sbjct: 59  TLELIAAAQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GA+D+IV+DSVAALT +AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+
Sbjct: 119 GAIDVIVVDSVAALTXKAEIEGEMGDSXMGLQARMLSQAMRKLTGNLKQSNCMCIFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PF
Sbjct: 179 RMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
           KQ E  I+YG+G +  GEL+DLGVK  +V+K+GAW+S+ G
Sbjct: 239 KQAETQILYGQGFNREGELVDLGVKNKLVEKAGAWYSYNG 278


>gi|19746983|ref|NP_608119.1| recombinase A [Streptococcus pyogenes MGAS8232]
 gi|50915144|ref|YP_061116.1| recombinase A [Streptococcus pyogenes MGAS10394]
 gi|94989440|ref|YP_597541.1| recombinase A [Streptococcus pyogenes MGAS9429]
 gi|94993329|ref|YP_601428.1| recombinase A [Streptococcus pyogenes MGAS2096]
 gi|139474556|ref|YP_001129272.1| recombinase A [Streptococcus pyogenes str. Manfredo]
 gi|306826477|ref|ZP_07459788.1| recombination protein A [Streptococcus pyogenes ATCC 10782]
 gi|23822028|sp|Q8NZ30|RECA_STRP8 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|59798142|sp|Q5X9I0|RECA_STRP6 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|122986883|sp|Q1J9C7|RECA_STRPB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|122987065|sp|Q1JJH6|RECA_STRPC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166220685|sp|A2RGU8|RECA_STRPG RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|19749237|gb|AAL98618.1| recombination protein [Streptococcus pyogenes MGAS8232]
 gi|50904218|gb|AAT87933.1| RecA [Streptococcus pyogenes MGAS10394]
 gi|94542948|gb|ABF32997.1| RecA protein [Streptococcus pyogenes MGAS9429]
 gi|94546837|gb|ABF36884.1| RecA protein [Streptococcus pyogenes MGAS2096]
 gi|134272803|emb|CAM31080.1| RecA recombinase (recombinase A) [Streptococcus pyogenes str.
           Manfredo]
 gi|304431336|gb|EFM34334.1| recombination protein A [Streptococcus pyogenes ATCC 10782]
          Length = 378

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/326 (58%), Positives = 256/326 (78%), Gaps = 6/326 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KDS  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGTTQIKGTGDQKDSSI 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK  E +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332
           GQG EN+K +L E+ E+ + I+  +R
Sbjct: 316 GQGSENAKRYLAEHPELFDEIDRKVR 341


>gi|312863947|ref|ZP_07724184.1| RecA protein [Streptococcus vestibularis F0396]
 gi|311100513|gb|EFQ58719.1| RecA protein [Streptococcus vestibularis F0396]
          Length = 379

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/332 (57%), Positives = 259/332 (78%), Gaps = 6/332 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+G+MFG+PETT GG ALKFY+SVRLD+R    IK     KD   
Sbjct: 196 NKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDKKDQNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDLGIIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338
           GQG EN+K +L ++ EI E I+  +R + GL+
Sbjct: 316 GQGSENAKKYLADHPEIFEEIDHKVRVHYGLI 347


>gi|88807878|ref|ZP_01123389.1| recombinase A [Synechococcus sp. WH 7805]
 gi|88787917|gb|EAR19073.1| recombinase A [Synechococcus sp. WH 7805]
          Length = 382

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/323 (58%), Positives = 253/323 (78%), Gaps = 3/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ +AL   L QI+R +GKG+IM+LG    +   +E +S+G+L LD+ALG GG+PKGR+V
Sbjct: 19  ERDQALNLVLGQIERNFGKGSIMRLGDASRMR--VETISTGALTLDLALG-GGYPKGRVV 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL LH IA+ Q+ GG  AFVDAEHALD +YA  LGVD++NLL+SQPDTG
Sbjct: 76  EVYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D LVRS AVDI+V+DSVAALTPRAEIEG+MG+   G QARLMSQA+RK+T +I
Sbjct: 136 EMALEIVDQLVRSAAVDIVVVDSVAALTPRAEIEGEMGDLAVGAQARLMSQAMRKITGNI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K      G + 
Sbjct: 196 GKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRA 255

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV KNK+A PF+  EFDI++G GIS  G L+DL  +  +V + GAW+S++G  +GQGR
Sbjct: 256 KVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVTRKGAWYSYEGDNIGQGR 315

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           +N+  +L +N +  + IE+L+RQ
Sbjct: 316 DNTIGWLEQNPDAKDTIETLVRQ 338


>gi|315612452|ref|ZP_07887365.1| recombination protein A [Streptococcus sanguinis ATCC 49296]
 gi|315315433|gb|EFU63472.1| recombination protein A [Streptococcus sanguinis ATCC 49296]
          Length = 383

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/334 (58%), Positives = 259/334 (77%), Gaps = 6/334 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 19  DREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRII 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 77  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++VIDSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +SI
Sbjct: 137 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 196

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KD+  
Sbjct: 197 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIKGTGDQKDTNV 256

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAW+S+KG+++
Sbjct: 257 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIQKAGAWYSYKGEKI 316

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           GQG EN+K +L ++ EI + I+  +R   GL+ D
Sbjct: 317 GQGSENAKKYLADHPEIFDEIDHQVRVQYGLIED 350


>gi|156067145|gb|ABR12794.2| recombinase A [Photobacterium phosphoreum]
          Length = 278

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/280 (68%), Positives = 235/280 (83%), Gaps = 2/280 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGP
Sbjct: 1   LAAALGQIEKQFGKGSIMKLGDNKTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKT L L  I+ +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTKLTLEVISAAQKQGKTCAFIDAEHALDPIYAQKLGVDINELLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 IVDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           KNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +V+K+
Sbjct: 239 KNKIAAPFKQAETQILYGQGFNRNGELIDLGVKNKLVEKA 278


>gi|166079840|gb|ABY81642.1| recombinase A [Staphylococcus capitis]
          Length = 320

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/314 (62%), Positives = 248/314 (78%), Gaps = 2/314 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKGA+M+LG        +   SSGS+ +D ALG GG+PKGRI+EIYGPESSGKTT+
Sbjct: 1   EKSFGKGAVMKLGDNKG--RKVSSTSSGSVTVDNALGAGGYPKGRIIEIYGPESSGKTTV 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALH IA+ QK GG  AF+DAEHALD +YA+ LGVD+ NL +SQPD GEQ LEI +  VRS
Sbjct: 59  ALHAIAEVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +IS+S    +FINQ+
Sbjct: 119 GAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAISKSNTTAIFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T++KVVKNK+A PF
Sbjct: 179 REKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRTKIKVVKNKVAPPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           +  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G R+GQG+EN K +L+EN +I
Sbjct: 239 RVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGKENVKTYLKENPQI 298

Query: 324 AENIESLLRQNAGL 337
            E I+  LR+  G+
Sbjct: 299 KEEIDRKLREKLGI 312


>gi|166079834|gb|ABY81639.1| recombinase A [Staphylococcus cohnii]
          Length = 310

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/311 (62%), Positives = 251/311 (80%), Gaps = 2/311 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKGA+M+LG   +    +  VSSGS+ LD ALG+GG+PKGRI+EIYGPESSGKTT+
Sbjct: 1   EKSFGKGAVMKLGDNEA--RKVSSVSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTV 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALH IA+ QK GG  AF+DAEHALD +YA  LG D++NL +SQPD GEQ LEI +  VRS
Sbjct: 59  ALHAIAEVQKNGGIAAFIDAEHALDPVYAEALGDDIQNLYLSQPDHGEQGLEIAEAFVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +IS+S    VFINQ+
Sbjct: 119 GAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAISKSNTTAVFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T++KVVKNK+A PF
Sbjct: 179 REKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRTKIKVVKNKVAPPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           +  E D+MYG+GIS  GELIDLGV+  IV+KSGAW+S+ G+R+GQG+EN K++L+EN ++
Sbjct: 239 RVAEVDMMYGKGISKEGELIDLGVENEIVNKSGAWYSYNGERMGQGKENVKLYLKENPKV 298

Query: 324 AENIESLLRQN 334
            + I+  LR+N
Sbjct: 299 NQEIDRKLREN 309


>gi|293364283|ref|ZP_06611009.1| recombination protein A [Streptococcus oralis ATCC 35037]
 gi|306828848|ref|ZP_07462040.1| recombination protein A [Streptococcus mitis ATCC 6249]
 gi|291317129|gb|EFE57556.1| recombination protein A [Streptococcus oralis ATCC 35037]
 gi|304429026|gb|EFM32114.1| recombination protein A [Streptococcus mitis ATCC 6249]
          Length = 382

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/334 (58%), Positives = 259/334 (77%), Gaps = 6/334 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 19  DREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRII 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 77  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++VIDSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +SI
Sbjct: 137 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 196

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KD+  
Sbjct: 197 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIKGTGDQKDTNV 256

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAW+S+KG+++
Sbjct: 257 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIQKAGAWYSYKGEKI 316

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           GQG EN+K +L ++ EI + I+  +R   GL+ D
Sbjct: 317 GQGSENAKKYLADHPEIFDAIDHQVRVQYGLIED 350


>gi|306825898|ref|ZP_07459237.1| recombination protein A [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432259|gb|EFM35236.1| recombination protein A [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 382

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/334 (58%), Positives = 259/334 (77%), Gaps = 6/334 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  DREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++VIDSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KD+  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIKGTGDQKDTNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAW+S+KG+++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIQKAGAWYSYKGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           GQG EN+K +L ++ EI + I+  +R   GL+ D
Sbjct: 316 GQGSENAKKYLADHPEIFDEIDHQVRVQYGLIED 349


>gi|325688809|gb|EGD30817.1| recombination protein A [Streptococcus sanguinis SK115]
          Length = 382

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/346 (56%), Positives = 263/346 (76%), Gaps = 6/346 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGAIM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK    +KD+  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDEKDTNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GELI +     I+ K+GAW+S+  +++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GQG EN+K +L ++ E+ + I+  +R   GL+    L E   N  D
Sbjct: 316 GQGSENAKKYLADHPEVFDEIDRQVRVRYGLIEGDDLAEAVGNKAD 361


>gi|291531884|emb|CBK97469.1| protein RecA [Eubacterium siraeum 70/3]
          Length = 419

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 187/324 (57%), Positives = 254/324 (78%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+ A+ QI + YG+GA+M LG +G+    +E V +GS+GLD ALGIGG PKGRI+
Sbjct: 21  EKKKALDTAMEQIIKNYGQGAVMFLGGEGNKKLDVESVPTGSIGLDYALGIGGLPKGRII 80

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPES GKTT+ LH IA++QK GG  AF+D EHALD +YA+ LGVD+ +L++SQPDTG
Sbjct: 81  EIYGPESGGKTTVTLHAIAETQKLGGMAAFIDVEHALDPVYAKSLGVDIDHLIVSQPDTG 140

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L RSGA+DI+V+DSVAA+  +AEI+G++G+S  G+QARLMS A+RKLTS I
Sbjct: 141 EQALEIMETLARSGAIDIVVLDSVAAMVTKAEIDGEIGDSFVGVQARLMSAAMRKLTSVI 200

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S  + +FINQ+R KIGVM+G+PETT GG ALKFY+SVR+++R+   I D   I G  T
Sbjct: 201 SKSNTVAIFINQVREKIGVMYGNPETTPGGRALKFYASVRIEVRKGEKIVDGGEIIGYTT 260

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           + KVVKNK+A PFK+ +FD+++GEGIS  GE+I +G +   + KSGAW+S+ G+RLGQG+
Sbjct: 261 KCKVVKNKVAPPFKETQFDMIFGEGISRLGEIITMGEELGFIKKSGAWYSYNGERLGQGK 320

Query: 311 ENSKIFLRENIEIAENIESLLRQN 334
           E +K FL+EN ++   IE  +++N
Sbjct: 321 EKTKKFLKENDDLRLEIEGKIKEN 344


>gi|60393017|sp|Q9AGW0|RECA_STRAG RecName: Full=Protein RecA; AltName: Full=Recombinase A
          Length = 379

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/350 (56%), Positives = 265/350 (75%), Gaps = 7/350 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRIV
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIV 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+M QA+ KLT+SI
Sbjct: 136 EQDLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMMQAMHKLTASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+R    IK     KD   
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRGNTQIKGTGEHKDHNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PF++   +IMYGEGIS  GELI +     I+ K+GAW+S+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFREAFVEIMYGEGISRTGELIKIASDLDIIQKAGAWYSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA-DSLLQEPAINTKDDAD 355
           GQG EN+K +L +N  I + I+  +R + G+   DS +Q   +  K++AD
Sbjct: 316 GQGSENAKKYLADNPAIFDEIDHKVRVHFGMTEDDSPVQSELVEEKNEAD 365


>gi|322374973|ref|ZP_08049487.1| protein RecA [Streptococcus sp. C300]
 gi|321280473|gb|EFX57512.1| protein RecA [Streptococcus sp. C300]
          Length = 383

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/346 (56%), Positives = 262/346 (75%), Gaps = 6/346 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 19  DREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRII 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 77  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++VIDSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +SI
Sbjct: 137 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 196

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KD+  
Sbjct: 197 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIKGTGDQKDTNV 256

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAW+S+KG+++
Sbjct: 257 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIQKAGAWYSYKGEKI 316

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GQG EN+K +L ++ EI + I+  +R   GL+ D     P    +D
Sbjct: 317 GQGSENAKKYLADHPEIFDAIDHQVRVQYGLIEDEEGTTPTTVAED 362


>gi|327467930|gb|EGF13420.1| recombination protein A [Streptococcus sanguinis SK330]
          Length = 382

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/346 (56%), Positives = 263/346 (76%), Gaps = 6/346 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGAIM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK    +KD+  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDEKDTNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GELI +     I+ K+GAW+S+  +++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GQG EN+K +L ++ E+ + I+  +R   GL+    L E   N  D
Sbjct: 316 GQGSENAKKYLTDHPEVFDEIDRQVRVRYGLIEGDDLAEAVGNKAD 361


>gi|256847970|ref|ZP_05553414.1| recA protein [Lactobacillus coleohominis 101-4-CHN]
 gi|256715030|gb|EEU30007.1| recA protein [Lactobacillus coleohominis 101-4-CHN]
          Length = 359

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/322 (58%), Positives = 254/322 (78%), Gaps = 2/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL +I++ +GKG+IM++G        I  VSSGSL +D ALGIGG+P+GRI+E
Sbjct: 5   RKTALDNALKKIEKNFGKGSIMRMGDAADT--KIASVSSGSLAIDDALGIGGYPRGRIIE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  YA  LGVD+ NLL+SQPDTGE
Sbjct: 63  MYGPESSGKTTVALHAVAEVQKQGGTAAYIDAENALDPQYAEALGVDIDNLLLSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q LEI D L+ SGAVDI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I+
Sbjct: 123 QGLEIADALIASGAVDIVVVDSVAALVPRAEIEGEMGDTHVGLQARLMSQALRKLSGEIN 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++R++IRR   +K+   + GN+ +
Sbjct: 183 KTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRIEIRRGEQLKEGKEVIGNRAK 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           +K+VKNK+A PFK+ E DIMYG GIS  GEL+D+ V+ ++V KSGAW+S+   R+GQGRE
Sbjct: 243 IKIVKNKVAPPFKRAEVDIMYGTGISKTGELLDMAVEKNLVKKSGAWYSYGSDRIGQGRE 302

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
           N+K +L E+ E  + + + +R+
Sbjct: 303 NAKKWLSEHPEQMQELMTKVRE 324


>gi|146297141|ref|YP_001180912.1| recA protein [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410717|gb|ABP67721.1| RecA protein [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 356

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/336 (58%), Positives = 264/336 (78%), Gaps = 2/336 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M  +DK KAL+  + +I++ YGKGAIM+LG      E I+V+ +G+L LDIALG+GG P+
Sbjct: 1   MENLDKKKALDRVIMEIEKAYGKGAIMKLGEMAK--ENIDVIPTGALSLDIALGVGGVPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYG ESSGKTT+ALH IA++QK GG  AF+DAEHALD  YA++LGVD+ NL++SQ
Sbjct: 59  GRIVEIYGAESSGKTTIALHIIAEAQKMGGEAAFIDAEHALDPFYAKRLGVDINNLIVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+GEQALEI + LVRS A+D+IV+DSVAAL P+AEI+G+MGE+  G+QARLMSQALRKL
Sbjct: 119 PDSGEQALEIVEALVRSNAIDVIVVDSVAALVPQAEIDGEMGEAHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
               S++K  ++FINQ+R K+GVMFG+PETT GG ALKFY+SVRL++R+   IK +    
Sbjct: 179 AGVTSKTKTTVIFINQLREKVGVMFGNPETTPGGRALKFYASVRLEVRKGEIIKQQGQPI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G + +VKVVKNK+A PFK+ EFD++YGEGIS  G ++D+ V   ++ KSGAW+++ GQ++
Sbjct: 239 GTKVKVKVVKNKVAPPFKEAEFDLIYGEGISKEGNVLDVAVNIDVIQKSGAWYTYNGQKI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSL 342
           GQGREN+K FL+EN +I + I   ++QNA L  + +
Sbjct: 299 GQGRENAKQFLKENPDIMQEIIEKIKQNANLAFEKI 334


>gi|324995829|gb|EGC27740.1| recombination protein A [Streptococcus sanguinis SK678]
 gi|325686742|gb|EGD28768.1| recombination protein A [Streptococcus sanguinis SK72]
          Length = 382

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/346 (56%), Positives = 263/346 (76%), Gaps = 6/346 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGAIM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK    +KD+  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDEKDTNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GELI +     I+ K+GAW+S+  +++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GQG EN+K +L ++ E+ + I+  +R   GL+    L E   N  D
Sbjct: 316 GQGSENAKKYLADHPEVFDEIDRQVRVRYGLIEGDDLAEAVGNKAD 361


>gi|52630791|gb|AAU84863.1| RecA [Burkholderia fungorum]
          Length = 255

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/252 (75%), Positives = 224/252 (88%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGT AF+D
Sbjct: 3   EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFID 62

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AE
Sbjct: 63  AEHALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAE 122

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           IEG+MGESLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNA
Sbjct: 123 IEGEMGESLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNA 182

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A PF++  FDI+YGEGIS  GE+
Sbjct: 183 LKFYTSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPPFREAIFDILYGEGISRQGEI 242

Query: 283 IDLGVKASIVDK 294
           IDLGV+A IVDK
Sbjct: 243 IDLGVQAKIVDK 254


>gi|328944736|gb|EGG38897.1| recombination protein A [Streptococcus sanguinis SK1087]
          Length = 382

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/346 (56%), Positives = 263/346 (76%), Gaps = 6/346 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGAIM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK    +KD+  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDEKDTNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GELI +     I+ K+GAW+S+  +++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GQG EN+K +L ++ E+ + I+  +R   GL+    L E   N  D
Sbjct: 316 GQGSENAKKYLADHPEVFDEIDRQVRVRYGLIEGDDLAEAVGNKAD 361


>gi|110264803|gb|ABG56977.1| recA protein [Photobacterium leiognathi subsp. mandapamensis]
 gi|110264807|gb|ABG56979.1| recA protein [Photobacterium leiognathi subsp. mandapamensis]
 gi|156067101|gb|ABR12770.2| recombinase A [Photobacterium leiognathi subsp. mandapamensis]
 gi|156067103|gb|ABR12771.2| recombinase A [Photobacterium leiognathi subsp. mandapamensis]
 gi|159146616|gb|ABW90752.1| recombinase A [Photobacterium leiognathi]
          Length = 278

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/280 (67%), Positives = 237/280 (84%), Gaps = 2/280 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGP
Sbjct: 1   LAAALGQIEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L TIA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLETIAAAQRKGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 ICDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           KNK+A+PFKQ +  I+YG+G +  GEL+DLGVK  +V+K+
Sbjct: 239 KNKIAAPFKQADTQILYGQGFNRNGELVDLGVKHKLVEKA 278


>gi|123966977|ref|YP_001012058.1| recombinase A [Prochlorococcus marinus str. MIT 9515]
 gi|166220666|sp|A2BYU0|RECA_PROM5 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123201343|gb|ABM72951.1| RecA bacterial DNA recombination protein [Prochlorococcus marinus
           str. MIT 9515]
          Length = 370

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 187/318 (58%), Positives = 255/318 (80%), Gaps = 3/318 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL   L QI+R +G+G+IM+LG    +   +E +S+G+L LD+ALG GG+PKGR+VE+YG
Sbjct: 22  ALNLVLGQIERNFGRGSIMRLGDASRM--KVETISTGALTLDLALG-GGYPKGRVVEVYG 78

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL LH IA+ QK GG  AFVDAEHALD +YA  LGVD++NLL+SQPDTGE AL
Sbjct: 79  PESSGKTTLTLHAIAEVQKNGGIAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMAL 138

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EI D L+RS AVD++V+DSVAALTPRAEIEG+MG+ + G QARLMSQA+RK+T +I +S 
Sbjct: 139 EIVDQLIRSTAVDLVVVDSVAALTPRAEIEGEMGDHVIGSQARLMSQAMRKITGNIGKSG 198

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K      G + +VKV
Sbjct: 199 CTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRAKVKV 258

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
            KNK+A PF+  EFDI++G+GIS  G L+DL  + +I+ + GAW+S++G+ +GQGR+N+ 
Sbjct: 259 AKNKVAPPFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYSYEGENIGQGRDNTI 318

Query: 315 IFLRENIEIAENIESLLR 332
           I+L +N+EI + +E +++
Sbjct: 319 IWLDQNLEIKKKVEGIVK 336


>gi|52630795|gb|AAU84865.1| RecA [Burkholderia glathei]
          Length = 254

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/254 (74%), Positives = 225/254 (88%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF
Sbjct: 1   VVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKIGGTAAF 60

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           +DAEHALD  YA+KLGV+  +LLISQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+
Sbjct: 61  IDAEHALDVQYAQKLGVNASDLLISQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPK 120

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
           AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGG
Sbjct: 121 AEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGG 180

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           NALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  G
Sbjct: 181 NALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQG 240

Query: 281 ELIDLGVKASIVDK 294
           E+IDLGV+A IVDK
Sbjct: 241 EIIDLGVQAKIVDK 254


>gi|293400773|ref|ZP_06644918.1| RecA protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305799|gb|EFE47043.1| RecA protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 351

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 187/322 (58%), Positives = 258/322 (80%), Gaps = 2/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K   L  A+  I++ YGKG+IM+LG + ++   I+ +SSGS+ +D ALGIGG+PKGRI+E
Sbjct: 25  KDTLLSDAIKAIEKQYGKGSIMKLGDRAAVE--IDAISSGSIKIDEALGIGGYPKGRIIE 82

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH IA+ QK GG  AF+DAE+A+D +YA+KLGV++  L++SQPD+GE
Sbjct: 83  IYGPESSGKTTLALHAIAEVQKKGGRAAFIDAENAIDPVYAQKLGVNIDELILSQPDSGE 142

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL+IT+MLV+SGA+D++V+DSVAAL P+AE++G+MG+S  G+QARLMS+A+RKL+  ++
Sbjct: 143 QALDITEMLVKSGAIDLVVVDSVAALVPQAELDGEMGDSQVGLQARLMSKAMRKLSGVMN 202

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           RS+C  +FINQ+R K+GV++G+PETT GG ALKFYSSVRLDIRR  +IK+   I GN+  
Sbjct: 203 RSECTAIFINQLREKVGVVYGNPETTPGGRALKFYSSVRLDIRRSEAIKNGTEIIGNKVN 262

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNK+A PFK    +IMYGEGIS+  EL+DL V   IV KSGAWFS+ G+++GQG+E
Sbjct: 263 VKIVKNKVAPPFKTAAIEIMYGEGISYIAELLDLCVDHDIVMKSGAWFSYNGEKIGQGKE 322

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
            +K  ++ N E+ E +++ L +
Sbjct: 323 AAKNTIKSNPELLEELKTKLME 344


>gi|46447629|ref|YP_008994.1| recombinase A [Candidatus Protochlamydia amoebophila UWE25]
 gi|46401270|emb|CAF24719.1| probable recombination protein recA [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 361

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/324 (59%), Positives = 253/324 (78%), Gaps = 2/324 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL  A+SQI++ +G+GAIM  G   S  E + V+ +G+L LDIALGIGG P+GR+V
Sbjct: 10  ERKKALGLAVSQIKKQFGEGAIMSFGKHSSEKE-MSVIKTGALALDIALGIGGVPRGRVV 68

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGK+TLALH +A +QK GG  A++DAEHALD  YA K+G+++ +L+ISQPD+G
Sbjct: 69  EIYGPESSGKSTLALHIVANAQKNGGLAAYIDAEHALDPSYAGKIGINIDDLMISQPDSG 128

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+AL I +ML RS AVD+IVIDSVAAL P++E+EG++G+   G+QAR+MSQALRKLT+S+
Sbjct: 129 EEALNIAEMLARSNAVDVIVIDSVAALVPKSELEGEIGDQFMGLQARMMSQALRKLTASL 188

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI-TGNQ 249
           S+S    +FINQ+R KIG+++G+PETTTGG ALKFYSSVRLDIRR G IK  D+   GN+
Sbjct: 189 SKSNTCAIFINQIRDKIGIVYGNPETTTGGRALKFYSSVRLDIRRTGGIKGPDNTEIGNR 248

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKV KNKMA PF+  EFDI++ EGIS  G  ID+  + +IVDK GAWFS+KGQRLGQG
Sbjct: 249 VKVKVSKNKMAPPFQIAEFDILFNEGISRTGSAIDMATEYNIVDKKGAWFSYKGQRLGQG 308

Query: 310 RENSKIFLRENIEIAENIESLLRQ 333
           RE  +   + N  + E IE+L+ Q
Sbjct: 309 REAVREEFKNNPTLLEEIEALILQ 332


>gi|148985525|ref|ZP_01818714.1| recombinase A [Streptococcus pneumoniae SP3-BS71]
 gi|148993194|ref|ZP_01822760.1| recA protein [Streptococcus pneumoniae SP9-BS68]
 gi|148998478|ref|ZP_01825919.1| recombinase A [Streptococcus pneumoniae SP11-BS70]
 gi|149003604|ref|ZP_01828469.1| recombinase A [Streptococcus pneumoniae SP14-BS69]
 gi|149007422|ref|ZP_01831065.1| recombinase A [Streptococcus pneumoniae SP18-BS74]
 gi|168490071|ref|ZP_02714270.1| protein RecA [Streptococcus pneumoniae SP195]
 gi|168492084|ref|ZP_02716227.1| protein RecA [Streptococcus pneumoniae CDC0288-04]
 gi|168494724|ref|ZP_02718867.1| protein RecA [Streptococcus pneumoniae CDC3059-06]
 gi|168576650|ref|ZP_02722516.1| protein RecA [Streptococcus pneumoniae MLV-016]
 gi|182684884|ref|YP_001836631.1| recombinase A [Streptococcus pneumoniae CGSP14]
 gi|225855433|ref|YP_002736945.1| recombinase A [Streptococcus pneumoniae JJA]
 gi|225857522|ref|YP_002739033.1| recombinase A [Streptococcus pneumoniae P1031]
 gi|225859704|ref|YP_002741214.1| recombinase A [Streptococcus pneumoniae 70585]
 gi|237650969|ref|ZP_04525221.1| recombinase A [Streptococcus pneumoniae CCRI 1974]
 gi|237821646|ref|ZP_04597491.1| recombinase A [Streptococcus pneumoniae CCRI 1974M2]
 gi|303254126|ref|ZP_07340241.1| recombinase A [Streptococcus pneumoniae BS455]
 gi|303260322|ref|ZP_07346292.1| recombinase A [Streptococcus pneumoniae SP-BS293]
 gi|303262470|ref|ZP_07348412.1| recombinase A [Streptococcus pneumoniae SP14-BS292]
 gi|303265100|ref|ZP_07351013.1| recombinase A [Streptococcus pneumoniae BS397]
 gi|303266038|ref|ZP_07351933.1| recombinase A [Streptococcus pneumoniae BS457]
 gi|303268030|ref|ZP_07353831.1| recombinase A [Streptococcus pneumoniae BS458]
 gi|307068558|ref|YP_003877524.1| RecA/RadA recombinase [Streptococcus pneumoniae AP200]
 gi|307128147|ref|YP_003880178.1| protein RecA [Streptococcus pneumoniae 670-6B]
 gi|238691133|sp|B2IM28|RECA_STRPS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|254790448|sp|C1C9K8|RECA_STRP7 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|254790451|sp|C1CGM4|RECA_STRZJ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|254790452|sp|C1CMP5|RECA_STRZP RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|147755671|gb|EDK62717.1| recombinase A [Streptococcus pneumoniae SP11-BS70]
 gi|147758336|gb|EDK65336.1| recombinase A [Streptococcus pneumoniae SP14-BS69]
 gi|147760994|gb|EDK67963.1| recombinase A [Streptococcus pneumoniae SP18-BS74]
 gi|147922245|gb|EDK73366.1| recombinase A [Streptococcus pneumoniae SP3-BS71]
 gi|147928168|gb|EDK79186.1| recA protein [Streptococcus pneumoniae SP9-BS68]
 gi|182630218|gb|ACB91166.1| recombinase A [Streptococcus pneumoniae CGSP14]
 gi|183571550|gb|EDT92078.1| protein RecA [Streptococcus pneumoniae SP195]
 gi|183573656|gb|EDT94184.1| protein RecA [Streptococcus pneumoniae CDC0288-04]
 gi|183575357|gb|EDT95885.1| protein RecA [Streptococcus pneumoniae CDC3059-06]
 gi|183577586|gb|EDT98114.1| protein RecA [Streptococcus pneumoniae MLV-016]
 gi|225721855|gb|ACO17709.1| protein RecA [Streptococcus pneumoniae 70585]
 gi|225723947|gb|ACO19800.1| protein RecA [Streptococcus pneumoniae JJA]
 gi|225724324|gb|ACO20176.1| protein RecA [Streptococcus pneumoniae P1031]
 gi|301800711|emb|CBW33359.1| RecA recombinase (recombinase A) [Streptococcus pneumoniae OXC141]
 gi|301802627|emb|CBW35393.1| RecA recombinase (recombinase A) [Streptococcus pneumoniae INV200]
 gi|302598959|gb|EFL65990.1| recombinase A [Streptococcus pneumoniae BS455]
 gi|302636370|gb|EFL66863.1| recombinase A [Streptococcus pneumoniae SP14-BS292]
 gi|302638488|gb|EFL68953.1| recombinase A [Streptococcus pneumoniae SP-BS293]
 gi|302642390|gb|EFL72736.1| recombinase A [Streptococcus pneumoniae BS458]
 gi|302644479|gb|EFL74731.1| recombinase A [Streptococcus pneumoniae BS457]
 gi|302645317|gb|EFL75551.1| recombinase A [Streptococcus pneumoniae BS397]
 gi|306410095|gb|ADM85522.1| RecA/RadA recombinase [Streptococcus pneumoniae AP200]
 gi|306485209|gb|ADM92078.1| protein RecA [Streptococcus pneumoniae 670-6B]
 gi|327389110|gb|EGE87456.1| protein RecA [Streptococcus pneumoniae GA04375]
          Length = 388

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/358 (55%), Positives = 270/358 (75%), Gaps = 7/358 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  EREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     K++  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKETNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAW+S+K +++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV-ADSLLQEPAINTKDDADKDDTDNVE 363
           GQG EN+K +L E+ EI + I+  +R   GL+  + + ++   N KD+  K++  N E
Sbjct: 316 GQGSENAKKYLAEHPEIFDEIDKQVRSKFGLIDGEEVSEQDTENKKDEPKKEEAVNEE 373


>gi|146319913|ref|YP_001199624.1| RecA protein [Streptococcus suis 98HAH33]
 gi|253750980|ref|YP_003024121.1| RecA recombinase (recombinase A) [Streptococcus suis SC84]
 gi|253752880|ref|YP_003026020.1| RecA recombinase (recombinase A) [Streptococcus suis P1/7]
 gi|253754705|ref|YP_003027845.1| RecA recombinase (recombinase A) [Streptococcus suis BM407]
 gi|330831913|ref|YP_004400738.1| RecA protein [Streptococcus suis ST3]
 gi|145690719|gb|ABP91224.1| RecA protein [Streptococcus suis 98HAH33]
 gi|251815269|emb|CAZ50834.1| RecA recombinase (recombinase A) [Streptococcus suis SC84]
 gi|251817169|emb|CAZ54890.1| RecA recombinase (recombinase A) [Streptococcus suis BM407]
 gi|251819125|emb|CAR44208.1| RecA recombinase (recombinase A) [Streptococcus suis P1/7]
 gi|292557523|gb|ADE30524.1| homologous recombination factor RecA [Streptococcus suis GZ1]
 gi|319757232|gb|ADV69174.1| RecA protein [Streptococcus suis JS14]
 gi|329306136|gb|AEB80552.1| RecA protein [Streptococcus suis ST3]
          Length = 383

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/341 (56%), Positives = 263/341 (77%), Gaps = 6/341 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL +DIALG GG+PKGRI+
Sbjct: 19  ERKKALDDALKSIEKDFGKGAVMRLGERAE--QKVQVMSSGSLSIDIALGAGGYPKGRII 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 77  EIYGPESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +SI
Sbjct: 137 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 196

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K + +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+D+R    IK     KD   
Sbjct: 197 NKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVRGNTQIKGTGDKKDQNV 256

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T+VK+VKNK+A PFK+   +IMYGEGIS  GELI++G    I+ K+GAW+S+ G+++
Sbjct: 257 GKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKI 316

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           GQG EN+K FL +N  I + I+  +R + GL+    ++E A
Sbjct: 317 GQGSENAKKFLADNPAIFDEIDRKIRVHYGLIEADGVEEVA 357


>gi|159894948|gb|ABX09820.1| recombinase A [Vibrio orientalis]
          Length = 278

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/280 (67%), Positives = 236/280 (84%), Gaps = 2/280 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGP
Sbjct: 1   LAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGA+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 ICDALARSGAIDVMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           KNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +++K+
Sbjct: 239 KNKIAAPFKQAETQILYGQGFNREGELIDLGVKHKLIEKA 278


>gi|251783472|ref|YP_002997777.1| recombinase A [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242392104|dbj|BAH82563.1| recombinase A [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 378

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/330 (58%), Positives = 257/330 (77%), Gaps = 6/330 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KDS  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGTTQIKGTGDQKDSSI 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK  E +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAG 336
           GQG EN+K +L ++ E+ + I+  +R   G
Sbjct: 316 GQGSENAKRYLADHPELFDEIDRKVRVKFG 345


>gi|206900229|ref|YP_002250884.1| protein RecA [Dictyoglomus thermophilum H-6-12]
 gi|206739332|gb|ACI18390.1| protein RecA [Dictyoglomus thermophilum H-6-12]
          Length = 351

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/328 (60%), Positives = 265/328 (80%), Gaps = 2/328 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           ++K KALE+A+ QI++ +GKGAIM+LGSQ      + V+ +G L LD ALG+GG P+GRI
Sbjct: 1   MEKEKALESAIFQIEKQFGKGAIMRLGSQERF--QVPVIPTGILTLDYALGVGGVPRGRI 58

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +E++GPE SGKTT+AL  IA +QK GG  AF+DAEHA D  YARK+GV+L+NLLISQPDT
Sbjct: 59  IELFGPEGSGKTTVALQIIASAQKMGGVAAFIDAEHAFDPNYARKIGVNLENLLISQPDT 118

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI ++LVRSG VD+IVIDSVAAL PRAE+EG+MG++  G+QARLMSQALRKLT  
Sbjct: 119 GEQALEIAEILVRSGGVDVIVIDSVAALVPRAELEGEMGDAFIGLQARLMSQALRKLTGV 178

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SK + +FINQ+R K+GV FG+PETT GG ALKFY+SVR+D+R+  S+K+   +TG +
Sbjct: 179 ISKSKTVAIFINQLREKVGVFFGNPETTPGGRALKFYASVRIDVRKAESMKEGSEVTGTK 238

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PFK+ EF+++YGEGIS  G ++D GV+A ++++SG W+ +K  RLGQG
Sbjct: 239 VKVKVVKNKVAPPFKEGEFELIYGEGISREGCILDAGVEAKVIERSGTWYIYKDIRLGQG 298

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           REN+K++L+E+ EIA+ IE  +R+  G 
Sbjct: 299 RENAKLYLKEHPEIADEIEREIRKIWGF 326


>gi|331267066|ref|YP_004326696.1| recombinase A [Streptococcus oralis Uo5]
 gi|326683738|emb|CBZ01356.1| recombinase A [Streptococcus oralis Uo5]
          Length = 382

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/334 (58%), Positives = 259/334 (77%), Gaps = 6/334 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  DREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++VIDSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KD+  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIKGTGDQKDTNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAW+S+KG+++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIQKAGAWYSYKGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           GQG EN+K +L ++ EI + I+  +R   GL+ D
Sbjct: 316 GQGSENAKKYLADHPEIFDAIDHQVRVQYGLIED 349


>gi|110264795|gb|ABG56973.1| recA protein [Photobacterium leiognathi]
 gi|110264797|gb|ABG56974.1| recA protein [Photobacterium leiognathi]
          Length = 277

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/279 (68%), Positives = 236/279 (84%), Gaps = 2/279 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGP
Sbjct: 1   LAAALGQIEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L TIA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLETIAAAQRKGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 ICDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK 294
           KNK+A+PFKQ +  I+YG+G +  GEL+DLGVK  +V+K
Sbjct: 239 KNKIAAPFKQADTQILYGQGFNRNGELVDLGVKHKLVEK 277


>gi|33863994|ref|NP_895554.1| recombinase A [Prochlorococcus marinus str. MIT 9313]
 gi|50403572|sp|Q7V547|RECA_PROMM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|33635578|emb|CAE21902.1| RecA bacterial DNA recombination protein [Prochlorococcus marinus
           str. MIT 9313]
          Length = 379

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/323 (59%), Positives = 250/323 (77%), Gaps = 3/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL   L QI+R +GKG+IM+LG    +   +E   +G+L LD+ALG GG+PKGR+V
Sbjct: 24  ERDKALNLVLGQIERNFGKGSIMRLGDASRMR--VETFPTGALTLDLALG-GGYPKGRVV 80

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL LH IA+ Q+ GG  AFVDAEHALD +YA  LGVD++NLL+SQPDTG
Sbjct: 81  EVYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTG 140

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D LVRS AVDI+V+DSVAALTPR+EIEG+MG+   G QARLMSQA+RK+T +I
Sbjct: 141 EMALEIVDQLVRSAAVDIVVVDSVAALTPRSEIEGEMGDLAVGSQARLMSQAMRKITGNI 200

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K      G + 
Sbjct: 201 GKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRA 260

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV KNK+A PF+  EFDI++G GIS  G L+DL  +  +V + GAW+S++G  +GQGR
Sbjct: 261 KVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVIRKGAWYSYEGDNIGQGR 320

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           +N+  +L +N E  E IE L+RQ
Sbjct: 321 DNTITWLEQNSEAQEQIEVLVRQ 343


>gi|228476704|ref|ZP_04061373.1| protein RecA [Streptococcus salivarius SK126]
 gi|228251653|gb|EEK10750.1| protein RecA [Streptococcus salivarius SK126]
          Length = 379

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/332 (57%), Positives = 259/332 (78%), Gaps = 6/332 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+G+MFG+PETT GG ALKFY+SVRLD+R    IK     KD   
Sbjct: 196 NKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDKKDQNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDLGIIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338
           GQG EN+K +L ++ +I E I+  +R + GL+
Sbjct: 316 GQGSENAKKYLADHPDIFEEIDHKVRVHYGLI 347


>gi|124023990|ref|YP_001018297.1| recombinase A [Prochlorococcus marinus str. MIT 9303]
 gi|166220665|sp|A2CC22|RECA_PROM3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123964276|gb|ABM79032.1| RecA bacterial DNA recombination protein [Prochlorococcus marinus
           str. MIT 9303]
          Length = 379

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/323 (59%), Positives = 250/323 (77%), Gaps = 3/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL   L QI+R +GKG+IM+LG    +   +E   +G+L LD+ALG GG+PKGR+V
Sbjct: 24  ERDKALNLVLGQIERNFGKGSIMRLGDASRMR--VETFPTGALTLDLALG-GGYPKGRVV 80

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL LH IA+ Q+ GG  AFVDAEHALD +YA  LGVD++NLL+SQPDTG
Sbjct: 81  EVYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTG 140

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D LVRS AVDI+V+DSVAALTPR+EIEG+MG+   G QARLMSQA+RK+T +I
Sbjct: 141 EMALEIVDQLVRSAAVDIVVVDSVAALTPRSEIEGEMGDLAVGSQARLMSQAMRKITGNI 200

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K      G + 
Sbjct: 201 GKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRA 260

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV KNK+A PF+  EFDI++G GIS  G L+DL  +  +V + GAW+S++G  +GQGR
Sbjct: 261 KVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVIRKGAWYSYEGDNIGQGR 320

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           +N+  +L +N E  E IE L+RQ
Sbjct: 321 DNTITWLEQNSEAQEQIEVLVRQ 343


>gi|325697272|gb|EGD39158.1| recombination protein A [Streptococcus sanguinis SK160]
          Length = 382

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/346 (56%), Positives = 263/346 (76%), Gaps = 6/346 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGAIM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK    +KD+  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDEKDTNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GELI +     I+ K+GAW+S+  +++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GQG EN+K +L ++ E+ + I+  +R   GL+    L E   N  D
Sbjct: 316 GQGSENAKKYLADHPEVFDEIDRQVRVRYGLIEGDDLAEVVGNKAD 361


>gi|262283645|ref|ZP_06061410.1| recombinase A [Streptococcus sp. 2_1_36FAA]
 gi|262260702|gb|EEY79403.1| recombinase A [Streptococcus sp. 2_1_36FAA]
          Length = 383

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/357 (56%), Positives = 270/357 (75%), Gaps = 9/357 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGAIM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++VIDSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD----KDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KD+  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDAKDTNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GELI +    +I+ K+GAW+S+  +++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLNIIKKAGAWYSYNDEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           GQG EN+K +L ++ E+ + I+  +R   GL+ D   QE      + A K  T+N+E
Sbjct: 316 GQGSENAKKYLADHPEVFDEIDRQVRVRFGLIEDD--QEGEATATETAGK-ITENIE 369


>gi|52630793|gb|AAU84864.1| RecA [Burkholderia gladioli]
          Length = 252

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/252 (75%), Positives = 224/252 (88%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AE
Sbjct: 61  AEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           IEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNA
Sbjct: 121 IEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNA 180

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+
Sbjct: 181 LKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRESIFDILYGEGISRQGEI 240

Query: 283 IDLGVKASIVDK 294
           IDLGV+A IVDK
Sbjct: 241 IDLGVQAKIVDK 252


>gi|209527175|ref|ZP_03275688.1| recA protein [Arthrospira maxima CS-328]
 gi|209492424|gb|EDZ92766.1| recA protein [Arthrospira maxima CS-328]
          Length = 366

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/345 (56%), Positives = 260/345 (75%), Gaps = 5/345 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL + L+QI++ +GKG+I++LG    +   +E +SSG+L LD+ALG GG P+GR++
Sbjct: 9   EKQKALNSVLNQIEKSFGKGSIVRLGDSARM--KVETISSGALTLDLALG-GGLPRGRVI 65

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH IA+ QKTGG  AFVDAEHALD  YA  LGVD++NLL+SQPDTG
Sbjct: 66  EIYGPESSGKTTLALHAIAEIQKTGGIAAFVDAEHALDPTYAAALGVDIENLLVSQPDTG 125

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D LVRS AVDI+V+DSVAAL PRAEIEGDMG+S  G+QARLMSQALRK+T +I
Sbjct: 126 EMALEIVDQLVRSVAVDIVVVDSVAALVPRAEIEGDMGDSHMGLQARLMSQALRKITGNI 185

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C ++F+NQ+R KIG+++G+PETTTGGNALKFY+SVRLDIRR  ++K      G + 
Sbjct: 186 GKSGCTVIFLNQLRQKIGIVYGNPETTTGGNALKFYASVRLDIRRTQTLKKGSDEYGIRA 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV KNK+A PF+  EFDI++G+GIS  G LIDL  +  ++ + G+W+S+    +GQGR
Sbjct: 246 KVKVAKNKVAPPFRIAEFDIIFGQGISTIGCLIDLAEETGVIKRKGSWYSYNNDNIGQGR 305

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           + +  ++ EN E  + I+  +R  A L   +++   ++   DD D
Sbjct: 306 DRTITYMEENPEFTKKIDDEVR--AALAGGAVVSATSVVKLDDND 348


>gi|157150986|ref|YP_001451293.1| recombinase A [Streptococcus gordonii str. Challis substr. CH1]
 gi|172046860|sp|P49986|RECA_STRGC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|157075780|gb|ABV10463.1| recA protein [Streptococcus gordonii str. Challis substr. CH1]
          Length = 383

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/334 (57%), Positives = 260/334 (77%), Gaps = 6/334 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGAIM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++VIDSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD----KDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KD+  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDAKDTNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GELI +    +I+ K+GAW+S+  +++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLNIIKKAGAWYSYNDEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           GQG EN+K +L ++ E+ + I+  +R   GL+ D
Sbjct: 316 GQGSENAKKYLADHPEVFDEIDRQVRVRFGLIED 349


>gi|322388603|ref|ZP_08062203.1| recombination protein A [Streptococcus infantis ATCC 700779]
 gi|321140523|gb|EFX36028.1| recombination protein A [Streptococcus infantis ATCC 700779]
          Length = 382

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/334 (58%), Positives = 259/334 (77%), Gaps = 6/334 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 19  DREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRII 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 77  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++VIDSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +SI
Sbjct: 137 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 196

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KD+  
Sbjct: 197 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIKGTGDQKDTNV 256

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAW+S+KG+++
Sbjct: 257 GKETKIKVVKNKVAPPFKEALVEIMYGEGISRTGELLKIASDLDIIQKAGAWYSYKGEKI 316

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           GQG EN+K +L ++ EI + I+  +R   GL+ +
Sbjct: 317 GQGSENAKKYLADHPEIFDEIDHQVRVQYGLIEE 350


>gi|15901764|ref|NP_346368.1| recombinase A [Streptococcus pneumoniae TIGR4]
 gi|15903799|ref|NP_359349.1| recombinase A [Streptococcus pneumoniae R6]
 gi|111658830|ref|ZP_01409451.1| hypothetical protein SpneT_02000001 [Streptococcus pneumoniae
           TIGR4]
 gi|116516275|ref|YP_817162.1| recombinase A [Streptococcus pneumoniae D39]
 gi|168487417|ref|ZP_02711925.1| protein RecA [Streptococcus pneumoniae CDC1087-00]
 gi|169833810|ref|YP_001695302.1| recombinase A [Streptococcus pneumoniae Hungary19A-6]
 gi|194398747|ref|YP_002038531.1| recombinase A [Streptococcus pneumoniae G54]
 gi|221232668|ref|YP_002511822.1| RecA recombinase (recombinase A) [Streptococcus pneumoniae ATCC
           700669]
 gi|225861739|ref|YP_002743248.1| recombinase A [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230225|ref|ZP_06963906.1| recombinase A [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255896|ref|ZP_06979482.1| recombinase A [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503685|ref|YP_003725625.1| recombination protein A [Streptococcus pneumoniae TCH8431/19A]
 gi|61230229|sp|P0A451|RECA_STRPN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|61230230|sp|P0A452|RECA_STRR6 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|122277992|sp|Q04IM6|RECA_STRP2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226726297|sp|B5E2E0|RECA_STRP4 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238688361|sp|B1I8Q1|RECA_STRPI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|254790449|sp|B8ZNU7|RECA_STRPJ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|254790453|sp|C1CTH6|RECA_STRZT RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|47422|emb|CAA78955.1| RecA [Streptococcus pneumoniae]
 gi|899420|emb|CAA84072.1| RecA protein [Streptococcus pneumoniae]
 gi|14973445|gb|AAK76008.1| recA protein [Streptococcus pneumoniae TIGR4]
 gi|15459438|gb|AAL00560.1| DNA recombination/repair [Streptococcus pneumoniae R6]
 gi|116076851|gb|ABJ54571.1| recA protein [Streptococcus pneumoniae D39]
 gi|168996312|gb|ACA36924.1| protein RecA [Streptococcus pneumoniae Hungary19A-6]
 gi|183569758|gb|EDT90286.1| protein RecA [Streptococcus pneumoniae CDC1087-00]
 gi|194358414|gb|ACF56862.1| recA protein [Streptococcus pneumoniae G54]
 gi|220675130|emb|CAR69713.1| RecA recombinase (recombinase A) [Streptococcus pneumoniae ATCC
           700669]
 gi|225727717|gb|ACO23568.1| protein RecA [Streptococcus pneumoniae Taiwan19F-14]
 gi|298239280|gb|ADI70411.1| recombination protein A [Streptococcus pneumoniae TCH8431/19A]
 gi|301794893|emb|CBW37353.1| RecA recombinase (recombinase A) [Streptococcus pneumoniae INV104]
          Length = 388

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/358 (55%), Positives = 270/358 (75%), Gaps = 7/358 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  EREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     K++  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKETNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAW+S+K +++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV-ADSLLQEPAINTKDDADKDDTDNVE 363
           GQG EN+K +L E+ EI + I+  +R   GL+  + + ++   N KD+  K++  N E
Sbjct: 316 GQGSENAKKYLAEHPEIFDEIDKQVRSKFGLIDGEEVSEQDTENKKDEPKKEEAVNEE 373


>gi|158340913|ref|YP_001522081.1| recombinase A [Acaryochloris marina MBIC11017]
 gi|158311154|gb|ABW32767.1| protein RecA [Acaryochloris marina MBIC11017]
          Length = 352

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/334 (57%), Positives = 255/334 (76%), Gaps = 5/334 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M  + EM   +K KAL+  +  +++ +GKGAIM+LG    +   IE +S+G+L LD+ALG
Sbjct: 1   MSAKTEMT--EKQKALDLVMKNVEKTFGKGAIMRLGDAARM--QIETISTGALPLDLALG 56

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG PKGR++E+YGPESSGKTT+ALH IA+ QK+GG  AFVDAEHALD +YA  LGVD+ 
Sbjct: 57  -GGLPKGRVIEVYGPESSGKTTVALHAIAEIQKSGGVAAFVDAEHALDPVYAAALGVDVS 115

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+ QPD+GE ALE+ D LVRS AVD++V+DSVAALTPRAEIEGDMG+S  G+QARLMS
Sbjct: 116 ELLVCQPDSGEMALEVVDQLVRSSAVDLVVVDSVAALTPRAEIEGDMGDSHMGLQARLMS 175

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRK+TS+I +S   ++F+NQ+R KIGV +GSPE TTGGNALKFY+SVRLDIRRV ++K
Sbjct: 176 QALRKITSNICKSGSTVIFLNQLRQKIGVTYGSPEVTTGGNALKFYASVRLDIRRVQTLK 235

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
               + G + +VKV KNK+A PFK  EFDI++G+GIS  G L+D+  +A ++ + GAW+S
Sbjct: 236 KGTEMYGIRAKVKVAKNKVAPPFKLAEFDILFGQGISTVGCLVDMAEEAEVIVRKGAWYS 295

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
           + G  +GQGREN+  +  ++ E ++ IE  +RQ 
Sbjct: 296 YDGSNIGQGRENTIQYFGDHPEFSQKIEQQVRQK 329


>gi|307708117|ref|ZP_07644585.1| protein RecA [Streptococcus mitis NCTC 12261]
 gi|307615902|gb|EFN95107.1| protein RecA [Streptococcus mitis NCTC 12261]
          Length = 376

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/367 (55%), Positives = 275/367 (74%), Gaps = 10/367 (2%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M ++K+    ++ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG
Sbjct: 1   MKFQKKFG-AEREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALG 57

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++ 
Sbjct: 58  SGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNID 117

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MS
Sbjct: 118 ELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMS 177

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK
Sbjct: 178 QAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIK 237

Query: 241 ----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
                KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+G
Sbjct: 238 GTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIKKAG 297

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           AW+S+K +++GQG EN+K +L +N EI + I+  +R   GL+     +E A + KD+A +
Sbjct: 298 AWYSYKDEKIGQGSENAKKYLADNPEIFDEIDHQVRVQFGLIDG---EEIAESKKDEAAQ 354

Query: 357 DDTDNVE 363
            D+ N E
Sbjct: 355 VDSVNEE 361


>gi|55820162|ref|YP_138604.1| recombinase A [Streptococcus thermophilus LMG 18311]
 gi|76363344|sp|Q5M6H2|RECA_STRT2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|55736147|gb|AAV59789.1| recombination protein A [Streptococcus thermophilus LMG 18311]
 gi|312277484|gb|ADQ62141.1| recombinase A [Streptococcus thermophilus ND03]
          Length = 384

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/332 (57%), Positives = 258/332 (77%), Gaps = 6/332 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+G+MFG+PETT GG ALKFY+SVRLD+R    IK     KD   
Sbjct: 196 NKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDKKDQNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDIGIIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338
           GQG EN+K +L ++ EI   I+  +R + GLV
Sbjct: 316 GQGSENAKKYLADHPEIFAEIDHKVRVHYGLV 347


>gi|284992305|ref|YP_003410859.1| recA protein [Geodermatophilus obscurus DSM 43160]
 gi|284065550|gb|ADB76488.1| recA protein [Geodermatophilus obscurus DSM 43160]
          Length = 344

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/347 (56%), Positives = 269/347 (77%), Gaps = 4/347 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M  +D+ KAL+ AL+QI + +GKG++M+LG    +   ++V+ +GS+ LDIALGIGG P+
Sbjct: 1   MATLDRDKALDMALAQIDKQFGKGSVMRLGDSPEV--AMKVIPTGSIALDIALGIGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++E+YGPE+SGKTT+ALH +A +Q  GG  AF+DAEHALD  YAR +GVD   LL+SQ
Sbjct: 59  GRVIEVYGPEASGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYARAIGVDTDALLVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI DML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDTGEQALEIADMLIRSGALDVIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T +++ S    +FINQ+R K+GV++GSPE TTGG ALKFYSSVRLD+RR+ ++K      
Sbjct: 179 TGALNNSGTTAIFINQLREKVGVVYGSPEVTTGGRALKFYSSVRLDVRRIETLKQGTEAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G++ RVKVVKNK+A+PFKQ E D+++G+G S  G LID GV+   + KSGAW++++G +L
Sbjct: 239 GSRVRVKVVKNKVAAPFKQAELDLLWGQGFSREGGLIDAGVEQGFIRKSGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           GQG+EN + FLR+N ++A+ IE  +++  G+ A   L EP +  + D
Sbjct: 299 GQGKENVRTFLRDNPDLADEIEKKVKEKLGIGAK--LDEPVVADQPD 343


>gi|227529688|ref|ZP_03959737.1| recombination protein A [Lactobacillus vaginalis ATCC 49540]
 gi|227350478|gb|EEJ40769.1| recombination protein A [Lactobacillus vaginalis ATCC 49540]
          Length = 360

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 186/326 (57%), Positives = 259/326 (79%), Gaps = 2/326 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ A+ +I++ +GKG+IM++G    +   I  VSSGSL +D ALG+GG+P+GRIVE
Sbjct: 5   RKAALDVAIRKIEKNFGKGSIMRMGDAADM--KIATVSSGSLAIDKALGVGGYPRGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+AL  +A+ Q+ GGT A++DAE+ALD  YA  LGV++ +LL+SQPDTGE
Sbjct: 63  IYGPESSGKTTVALQAVAEVQRQGGTAAYIDAENALDPQYAEALGVNVDDLLLSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           + LEI D L+ SGAVD++V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I+
Sbjct: 123 EGLEIADALISSGAVDLVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGEIN 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++K I +FINQ+R K+GVMFG+PETTTGG ALKFYS++R++IRR   IK+  ++ GN+T+
Sbjct: 183 KTKTIAIFINQIREKVGVMFGNPETTTGGRALKFYSTIRMEIRRSEQIKNGTNVIGNRTK 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           +K+VKNK+A PFK+ E DIMYGEGIS  GEL+D+ V+  +V KSGAW+S+  +R+GQGRE
Sbjct: 243 IKIVKNKVAPPFKRAEVDIMYGEGISKTGELLDMAVEQDLVKKSGAWYSYGDERIGQGRE 302

Query: 312 NSKIFLRENIEIAENIESLLRQNAGL 337
           N+K +L E+ +    + + +R+  G+
Sbjct: 303 NAKNWLAEHPDSMAELMNKVREANGM 328


>gi|257063784|ref|YP_003143456.1| protein RecA [Slackia heliotrinireducens DSM 20476]
 gi|256791437|gb|ACV22107.1| protein RecA [Slackia heliotrinireducens DSM 20476]
          Length = 361

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/327 (58%), Positives = 256/327 (78%), Gaps = 2/327 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +I +K  AL+ A  QI + +GKGAIM+LG      E + V+ +G+L LD ALGIGG P+G
Sbjct: 12  DIDNKDVALKNATEQINKKFGKGAIMKLGEDAEKLE-VGVIPTGALSLDAALGIGGVPRG 70

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+E+YGPE+SGKTTLAL  +A++Q  GG  AF+DAEHALD  YA +LGVD+  LLI+QP
Sbjct: 71  RIIEVYGPEASGKTTLALQILAEAQAAGGIAAFIDAEHALDPTYAARLGVDIDELLIAQP 130

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
            TGE+ALE+ DMLVRS A+D IVIDSVAAL PRAEIEG++G++  G+QARLMSQALRKL 
Sbjct: 131 STGEEALEVCDMLVRSNAIDCIVIDSVAALVPRAEIEGEIGDASVGLQARLMSQALRKLA 190

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK-DSIT 246
            S+S+S    +FINQ+R KIGVMFG+PETTTGG ALKF++SVR+D+RR+ ++K+K +   
Sbjct: 191 GSLSKSNTTCIFINQLREKIGVMFGNPETTTGGRALKFFASVRIDVRRIETLKNKSNEPC 250

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ R KVVKNK+A PF+Q EFD+MYG GIS  G ++D+GV+A +V KSG+W+++  +RL
Sbjct: 251 GNRVRAKVVKNKVAPPFRQAEFDLMYGTGISREGCILDMGVEADVVTKSGSWYTYGEERL 310

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333
           GQGR+ +K  LR N ++ + IE+ +R+
Sbjct: 311 GQGRDAAKEMLRTNPDLRDEIEAKVRE 337


>gi|71904445|ref|YP_281248.1| recombinase A [Streptococcus pyogenes MGAS6180]
 gi|123747737|sp|Q48QW7|RECA_STRPM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|71803540|gb|AAX72893.1| RecA [Streptococcus pyogenes MGAS6180]
          Length = 378

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/330 (58%), Positives = 257/330 (77%), Gaps = 6/330 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KDS  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGTTQIKGTGDQKDSSI 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK  E +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAG 336
           GQG EN+K +L ++ E+ + I+  +R   G
Sbjct: 316 GQGSENAKRYLADHPELFDEIDRKVRVKFG 345


>gi|324989658|gb|EGC21602.1| recombination protein A [Streptococcus sanguinis SK353]
          Length = 382

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/346 (56%), Positives = 263/346 (76%), Gaps = 6/346 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGAIM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK    +KD+  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDEKDTNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GELI +     I+ K+GAW+S+  +++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GQG EN+K +L ++ E+ + I+  +R   GL+    + E   N  D
Sbjct: 316 GQGSENAKKYLADHPEVFDEIDRQVRVRYGLIDGDDMAEAVGNKAD 361


>gi|327463462|gb|EGF09781.1| recombination protein A [Streptococcus sanguinis SK1057]
          Length = 382

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/346 (56%), Positives = 263/346 (76%), Gaps = 6/346 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGAIM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK    +KD+  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDEKDTNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GELI +     I+ K+GAW+S+  +++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GQG EN+K +L ++ E+ + I+  +R   GL+    + E   N  D
Sbjct: 316 GQGSENAKKYLADHPEVFDEIDRQVRVRYGLIDGDDMAEAVGNKAD 361


>gi|72382971|ref|YP_292326.1| recombinase A [Prochlorococcus marinus str. NATL2A]
 gi|123746243|sp|Q46IQ5|RECA_PROMT RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|72002821|gb|AAZ58623.1| RecA protein [Prochlorococcus marinus str. NATL2A]
          Length = 377

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 186/323 (57%), Positives = 254/323 (78%), Gaps = 3/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL   + QI+R +GKG+IM+LG    +   +E +S+G+L LD+ALG GG+PKGR++
Sbjct: 22  EKEKALSLVVGQIERNFGKGSIMRLGDASKMR--VETISTGALTLDLALG-GGYPKGRVI 78

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL LH IA+ Q+ GG  AFVDAEHALD +YA  LGVD++NLL+SQPDTG
Sbjct: 79  EVYGPESSGKTTLTLHAIAEIQRNGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTG 138

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D L+RS AVD++V+DSVAALTPR+EIEG+MG+   G QARLMSQA+RK+T +I
Sbjct: 139 EMALEIVDQLIRSAAVDLVVVDSVAALTPRSEIEGEMGDHSVGAQARLMSQAMRKITGNI 198

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C ++F+NQ+R+KIG+ +G+PETTTGGNALKFY+SVRLDIRR+ ++K      G + 
Sbjct: 199 GKSGCTVIFLNQLRLKIGITYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRA 258

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV KNK+A PF+  EFDI++G+GIS  G L+DL  + ++V + GAW+S++G  +GQGR
Sbjct: 259 KVKVAKNKVAPPFRIAEFDILFGKGISTLGCLLDLADETNVVTRKGAWYSYEGDNIGQGR 318

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           +N+  +L +N E  E IE L+++
Sbjct: 319 DNTITWLEQNPESKEIIEKLVKE 341


>gi|1350564|sp|P48293|RECA_SPIPL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|976445|gb|AAA75282.1| RecA [Arthrospira platensis NIES-39]
 gi|291567567|dbj|BAI89839.1| recombination protein RecA [Arthrospira platensis NIES-39]
          Length = 365

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/322 (59%), Positives = 251/322 (77%), Gaps = 3/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL + L+QI++ +GKG+I++LG    +   +E +SSG+L LD+ALG GG P+GR++
Sbjct: 9   EKQKALNSVLNQIEKSFGKGSIVRLGDSARM--KVETISSGALTLDLALG-GGLPRGRVI 65

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH IA+ QKTGG  AFVDAEHALD  YA  LGVD++NLL+SQPDTG
Sbjct: 66  EIYGPESSGKTTLALHAIAEIQKTGGIAAFVDAEHALDPTYAAALGVDIENLLVSQPDTG 125

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D LVRS AVDI+V+DSVAAL PRAEIEGDMG+S  G+QARLMSQALRK+T +I
Sbjct: 126 EMALEIVDQLVRSVAVDIVVVDSVAALVPRAEIEGDMGDSHMGLQARLMSQALRKITGNI 185

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C ++F+NQ+R KIG+++G+PETTTGGNALKFY+SVRLDIRR  ++K      G + 
Sbjct: 186 GKSGCTVIFLNQLRQKIGIVYGNPETTTGGNALKFYASVRLDIRRTQTLKKGSDEYGIRA 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV KNK+A PF+  EFDI++G+GIS  G LIDL  +  ++ + GAW+S+  + +GQGR
Sbjct: 246 KVKVAKNKVAPPFRIAEFDIIFGQGISTIGCLIDLAEETGVIKRKGAWYSYNNENIGQGR 305

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           + +  +++EN    E I+  +R
Sbjct: 306 DRTITYMQENPAFTEEIDKRVR 327


>gi|320103501|ref|YP_004179092.1| RecA protein [Isosphaera pallida ATCC 43644]
 gi|319750783|gb|ADV62543.1| RecA protein [Isosphaera pallida ATCC 43644]
          Length = 389

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/350 (56%), Positives = 272/350 (77%), Gaps = 8/350 (2%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL  A+SQI++ +G GAIM++G    +   +E +SSG+L LD+ALG  GFP+GRIVE++
Sbjct: 47  KALLNAISQIEKAFGAGAIMKMGENSHL--EVEGISSGALSLDLALGGKGFPRGRIVELF 104

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTT+AL  ++ +QK GG  AF+DAEHALD  + +KLGV++++LL+SQP   E+A
Sbjct: 105 GPESSGKTTIALQAVSNAQKLGGVAAFIDAEHALDPSWCKKLGVNIESLLVSQPSCAEEA 164

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           L+I +MLV S AVDIIV+DSVAAL P++EIEG++G+S  G+QARLMSQALRKLT +ISRS
Sbjct: 165 LQIAEMLVMSNAVDIIVVDSVAALVPKSEIEGEIGDSFVGVQARLMSQALRKLTPAISRS 224

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
           KC+L+FINQ+R KIGVMFGSPETT GG ALKFYSS+R+D+RR+GS+K+ D  TGN+ +VK
Sbjct: 225 KCVLIFINQIREKIGVMFGSPETTPGGRALKFYSSLRIDVRRIGSVKEGDEATGNRVKVK 284

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           +VKNK+A PF+  EFDIM+ +GIS  G+L+DL +   +V+K+G+WFS+   RLGQGRENS
Sbjct: 285 IVKNKIAPPFRVCEFDIMFNQGISREGDLLDLALADKLVEKTGSWFSYGDLRLGQGRENS 344

Query: 314 KIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           K++L+E+ E+A+ I       A ++A  + +  A  +  D D +  + +E
Sbjct: 345 KLYLKEHPELADEIA------AKVIAKRMKENGAFISGGDGDGEAEEPLE 388


>gi|159894950|gb|ABX09821.1| recombinase A [Vibrio splendidus]
          Length = 278

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/280 (67%), Positives = 236/280 (84%), Gaps = 2/280 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGP
Sbjct: 1   LAAALGQIEKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA +Q+ G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLELIAAAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGA+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 ICDALARSGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVV
Sbjct: 179 MAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           KNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +V+K+
Sbjct: 239 KNKIAAPFKQAETQILYGKGFNREGELIDLGVKNKLVEKA 278


>gi|149012471|ref|ZP_01833502.1| recA protein [Streptococcus pneumoniae SP19-BS75]
 gi|149021897|ref|ZP_01835884.1| recombinase A [Streptococcus pneumoniae SP23-BS72]
 gi|147763527|gb|EDK70463.1| recA protein [Streptococcus pneumoniae SP19-BS75]
 gi|147929935|gb|EDK80923.1| recombinase A [Streptococcus pneumoniae SP23-BS72]
          Length = 388

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/358 (55%), Positives = 269/358 (75%), Gaps = 7/358 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  EREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     K++  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKETNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAW+S+K +++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV-ADSLLQEPAINTKDDADKDDTDNVE 363
           GQG EN+K +L E+ EI + I+  +R   GL+  +   ++   N KD+  K++  N E
Sbjct: 316 GQGSENAKKYLAEHPEIFDEIDKQVRSKFGLIDGEEASEQDTENKKDEPKKEEAVNEE 373


>gi|307703979|ref|ZP_07640913.1| protein RecA [Streptococcus mitis SK597]
 gi|307622445|gb|EFO01448.1| protein RecA [Streptococcus mitis SK597]
          Length = 388

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/358 (55%), Positives = 270/358 (75%), Gaps = 7/358 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  EREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     K++  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKETNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAW+S+K +++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV-ADSLLQEPAINTKDDADKDDTDNVE 363
           GQG EN+K +L E+ EI + I+  +R   GL+  +   ++   N KD+A + D+ N E
Sbjct: 316 GQGSENAKKYLAEHPEIFDEIDKQVRSKFGLIDGEEASEQDTENKKDEAAQVDSVNEE 373


>gi|87124957|ref|ZP_01080804.1| RecA bacterial DNA recombination protein [Synechococcus sp. RS9917]
 gi|86167277|gb|EAQ68537.1| RecA bacterial DNA recombination protein [Synechococcus sp. RS9917]
          Length = 396

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/323 (58%), Positives = 252/323 (78%), Gaps = 3/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL   L QI+R +GKG+IM+LG    +   +E + +G+L LD+ALG GG+PKGR+V
Sbjct: 15  ERDKALNLVLGQIERNFGKGSIMRLGDASRMR--VETIPTGALTLDLALG-GGYPKGRVV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL LH IA+ Q+ GG  AFVDAEHALD +YA  LGVD++NLL+SQPDTG
Sbjct: 72  EVYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D LVRS AVDI+V+DSVAALTPRAEIEG+MG+   G QARLMSQA+RK+T +I
Sbjct: 132 EMALEIVDQLVRSAAVDIVVVDSVAALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNI 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K      G + 
Sbjct: 192 GKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRA 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV KNK+A PF+  EFDI++G GIS  G L+DL  +  +V + GAW+S++G  +GQGR
Sbjct: 252 KVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVIRKGAWYSYEGDNIGQGR 311

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           +N+  +L +N +  + IE+L+RQ
Sbjct: 312 DNTIGWLEQNPDAKDAIEALVRQ 334


>gi|58415365|emb|CAH57097.1| recA protein [Salinivibrio costicola subsp. costicola]
          Length = 265

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/267 (71%), Positives = 231/267 (86%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   IE VS+GSL LDIALG GG P GRI+EIYGPESSGKTTL L  IA+
Sbjct: 1   SIMRLGDDRTM--DIETVSTGSLSLDIALGAGGLPFGRIIEIYGPESSGKTTLTLEAIAE 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD IYARKLGVD+ NLL+SQPDTGEQALEI D L RSGAVD+IV
Sbjct: 59  AQKKGKTCAFIDAEHALDPIYARKLGVDIDNLLVSQPDTGEQALEIADALTRSGAVDMIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT++I  S  ++VFINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTANIKNSNTMMVFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+TRVKVVKNK+A+PFKQ EF I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNETRVKVVKNKVAAPFKQAEFQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+GI+  GEL+DLGVK  +V+K+GA
Sbjct: 239 LYGQGINLQGELVDLGVKHKLVEKAGA 265


>gi|124026712|ref|YP_001015827.1| recombinase A [Prochlorococcus marinus str. NATL1A]
 gi|166220664|sp|A2C503|RECA_PROM1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123961780|gb|ABM76563.1| RecA bacterial DNA recombination protein [Prochlorococcus marinus
           str. NATL1A]
          Length = 377

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 186/323 (57%), Positives = 254/323 (78%), Gaps = 3/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL   + QI+R +GKG+IM+LG    +   +E +S+G+L LD+ALG GG+PKGR++
Sbjct: 22  EKEKALSLVVGQIERNFGKGSIMRLGDASKMR--VETISTGALTLDLALG-GGYPKGRVI 78

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL LH IA+ Q+ GG  AFVDAEHALD +YA  LGVD++NLL+SQPDTG
Sbjct: 79  EVYGPESSGKTTLTLHAIAEIQRNGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTG 138

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D L+RS AVD++V+DSVAALTPR+EIEG+MG+   G QARLMSQA+RK+T +I
Sbjct: 139 EMALEIVDQLIRSAAVDLVVVDSVAALTPRSEIEGEMGDHSVGAQARLMSQAMRKITGNI 198

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C ++F+NQ+R+KIG+ +G+PETTTGGNALKFY+SVRLDIRR+ ++K      G + 
Sbjct: 199 GKSGCTVIFLNQLRLKIGITYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRA 258

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV KNK+A PF+  EFDI++G+GIS  G L+DL  + ++V + GAW+S++G  +GQGR
Sbjct: 259 KVKVAKNKVAPPFRIAEFDILFGKGISTLGCLLDLADETNVVTRKGAWYSYEGDNIGQGR 318

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           +N+  +L +N E  E IE L+++
Sbjct: 319 DNTITWLEQNPESKEIIEKLVKE 341


>gi|15675866|ref|NP_270040.1| recombinase A [Streptococcus pyogenes M1 GAS]
 gi|71911612|ref|YP_283162.1| recombinase A [Streptococcus pyogenes MGAS5005]
 gi|73921302|sp|P0C095|RECA_STRP1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|13623100|gb|AAK34761.1| recombination protein [Streptococcus pyogenes M1 GAS]
 gi|71854394|gb|AAZ52417.1| RecA [Streptococcus pyogenes MGAS5005]
          Length = 378

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/326 (58%), Positives = 256/326 (78%), Gaps = 6/326 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KDS  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGTTQIKGTGDQKDSSI 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK  E +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332
           GQG EN+K +L ++ E+ + I+  +R
Sbjct: 316 GQGSENAKRYLADHPELFDEIDLKVR 341


>gi|307709975|ref|ZP_07646422.1| protein RecA [Streptococcus mitis SK564]
 gi|307619346|gb|EFN98475.1| protein RecA [Streptococcus mitis SK564]
          Length = 388

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/358 (55%), Positives = 270/358 (75%), Gaps = 7/358 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  EREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     K++  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKETNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAW+S+K +++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV-ADSLLQEPAINTKDDADKDDTDNVE 363
           GQG EN+K +L E+ EI + I+  +R   GL+  +   ++   N KD+A + D+ N E
Sbjct: 316 GQGSENAKKYLAEHPEIFDEIDKQVRSKFGLIDGEEASEQDTENKKDEAAQVDSVNEE 373


>gi|320355319|ref|YP_004196658.1| RecA protein [Desulfobulbus propionicus DSM 2032]
 gi|320123821|gb|ADW19367.1| RecA protein [Desulfobulbus propionicus DSM 2032]
          Length = 344

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/334 (58%), Positives = 268/334 (80%), Gaps = 4/334 (1%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           K+++ A++QIQR +GKGAIM+LGS  +  E I V+ +G L +D+ALG+GG P+GR+ EIY
Sbjct: 13  KSVDNAITQIQRQFGKGAIMRLGS--TERENIPVIPTGILSVDLALGVGGLPRGRVTEIY 70

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPE+SGKTTLALH IA++Q+ GG  AF+DAEHALD+ YA +LGVD+ NLLISQPD GEQA
Sbjct: 71  GPEASGKTTLALHVIAEAQRRGGNAAFIDAEHALDTSYAERLGVDVDNLLISQPDFGEQA 130

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI ++L+RSG +D++V+DSVAAL PRAEI+G++G+   G+QARLMS A+RK T  ++R+
Sbjct: 131 LEIAEILIRSGGIDVVVVDSVAALVPRAEIDGNVGDQHVGLQARLMSHAMRKFTGVLNRT 190

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
             +L+FINQ+RMKIGVMFG+PETTTGGNALKFYSS+R+DIR+   IK+     GN T++K
Sbjct: 191 NTVLIFINQIRMKIGVMFGNPETTTGGNALKFYSSIRIDIRKTTQIKEGQDAIGNLTKIK 250

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           +VKNK+A PFKQ + DI+YGEGIS  G+++DLGV   IVDKSGAW++++ +R+GQGREN+
Sbjct: 251 IVKNKVAPPFKQADVDIIYGEGISRTGDVLDLGVAQGIVDKSGAWYAYQDERIGQGRENA 310

Query: 314 KIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           K +L+E+ +   +IE  LR   G+  D+  + PA
Sbjct: 311 KKYLKEHPDTLADIERKLRLAFGMPVDA--EPPA 342


>gi|116627024|ref|YP_819643.1| recombinase A [Streptococcus thermophilus LMD-9]
 gi|122268371|sp|Q03MX5|RECA_STRTD RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|116100301|gb|ABJ65447.1| RecA protein [Streptococcus thermophilus LMD-9]
          Length = 379

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/332 (57%), Positives = 258/332 (77%), Gaps = 6/332 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+G+MFG+PETT GG ALKFY+SVRLD+R    IK     KD   
Sbjct: 196 NKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDKKDQNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDIGIIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338
           GQG EN+K +L ++ EI   I+  +R + GL+
Sbjct: 316 GQGSENAKKYLADHPEIFAEIDHKVRVHYGLI 347


>gi|323350693|ref|ZP_08086354.1| recombination protein A [Streptococcus sanguinis VMC66]
 gi|322123113|gb|EFX94804.1| recombination protein A [Streptococcus sanguinis VMC66]
          Length = 382

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/339 (56%), Positives = 261/339 (76%), Gaps = 6/339 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGAIM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK    +KD+  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDEKDTNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GELI +     I+ K+GAW+S+  +++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           GQG EN+K +L ++ E+ + I+  +R   GL+    L E
Sbjct: 316 GQGSENAKKYLADHPEVFDEIDRQVRVRYGLIEGDDLAE 354


>gi|318042569|ref|ZP_07974525.1| recombinase A [Synechococcus sp. CB0101]
          Length = 375

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/332 (58%), Positives = 253/332 (76%), Gaps = 3/332 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL   L+QI+R +GKG+IM+LG    +   IE   +G+L LD+ALG GG+PKGR+V
Sbjct: 20  ERDKALGLVLNQIERNFGKGSIMRLGDASRMR--IETSPTGALTLDLALG-GGYPKGRVV 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ Q+ GG  AFVDAEHALD +YA  LGVD++NLL+SQPDTG
Sbjct: 77  EIYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAAALGVDIENLLVSQPDTG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D LVRS AVDI+V+DSVAALTPRAEIEG+MG+   G QARLMSQA+RK+T +I
Sbjct: 137 EMALEIVDQLVRSAAVDIVVVDSVAALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNI 196

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C ++F+NQ+R KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K      G + 
Sbjct: 197 GKSGCTVIFLNQLRQKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRA 256

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV KNK+A PF+  EFDI++G GIS  G L+DL  +  +V + GAW+S++G  +GQGR
Sbjct: 257 KVKVAKNKVAPPFRIAEFDILFGRGISTVGCLLDLAEENGVVVRKGAWYSYEGDNIGQGR 316

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL 342
           +N+  +L +N E  E IE  +R+     +DSL
Sbjct: 317 DNTITWLEQNPEPKEQIERQVREKLSETSDSL 348


>gi|6225932|sp|O85502|RECA_STRPA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|3212104|gb|AAD04860.1| RecA protein [Streptococcus parasanguinis]
          Length = 381

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/332 (57%), Positives = 258/332 (77%), Gaps = 6/332 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  EREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KD+  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKDTNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAW+S+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAMVEIMYGEGISRTGELVKIATDLDIIQKAGAWYSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338
           GQG EN+K FL ++ EI + I+  +R + GL+
Sbjct: 316 GQGSENAKKFLADHPEIFDEIDHKVRVHFGLI 347


>gi|166079845|gb|ABY81644.1| recombinase A [Staphylococcus saccharolyticus]
          Length = 320

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/314 (61%), Positives = 249/314 (79%), Gaps = 2/314 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKGA+M+LG        +   SSGS+ +D ALG+GG+PKGRI+EIYGPESSGKTT+
Sbjct: 1   EKSFGKGAVMKLGDNKG--RKVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTV 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALH IA+ QK GG  AF+DAEHALD +YA+ LGVD+ NL +SQPD GEQ LEI +  VRS
Sbjct: 59  ALHAIAEVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +IS+S    +FINQ+
Sbjct: 119 GAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAISKSNTTAIFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T++KVVKNK+A PF
Sbjct: 179 REKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRTKIKVVKNKVAPPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           +  E DIMYG+GIS  GELIDLGV+  I+DKSGAW+S+  +R+GQG+EN K +L+EN +I
Sbjct: 239 RVAEVDIMYGQGISKEGELIDLGVENDIIDKSGAWYSYNEERMGQGKENVKNYLKENPQI 298

Query: 324 AENIESLLRQNAGL 337
            E I+  LR+  G+
Sbjct: 299 KEEIDRKLREKLGI 312


>gi|55822051|ref|YP_140492.1| recombinase A [Streptococcus thermophilus CNRZ1066]
 gi|76363343|sp|Q5M1Y2|RECA_STRT1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|55738036|gb|AAV61677.1| recombination protein A [Streptococcus thermophilus CNRZ1066]
          Length = 384

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/332 (57%), Positives = 258/332 (77%), Gaps = 6/332 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERLKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+G+MFG+PETT GG ALKFY+SVRLD+R    IK     KD   
Sbjct: 196 NKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDKKDQNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDIGIIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338
           GQG EN+K +L ++ EI   I+  +R + GLV
Sbjct: 316 GQGSENAKKYLADHPEIFAEIDHKVRVHYGLV 347


>gi|199599610|ref|ZP_03212992.1| RecA/RadA recombinase [Lactobacillus rhamnosus HN001]
 gi|258507884|ref|YP_003170635.1| recombination protein RecA [Lactobacillus rhamnosus GG]
 gi|199589502|gb|EDY97626.1| RecA/RadA recombinase [Lactobacillus rhamnosus HN001]
 gi|257147811|emb|CAR86784.1| Protein recA [Lactobacillus rhamnosus GG]
 gi|259649211|dbj|BAI41373.1| recombinase RecA [Lactobacillus rhamnosus GG]
          Length = 350

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/344 (54%), Positives = 264/344 (76%), Gaps = 2/344 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   ++ +AL  AL +I++ +GKGAIM++G +  +   +  VSSGSL +D ALG+GG P+
Sbjct: 1   MAETERQEALATALKKIEKNFGKGAIMRMGDK--VETRVSAVSSGSLAIDDALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYGPESSGKTT+ALH +A  Q+ GGT A++DAE+A+D  YA  LGV++  LL+SQ
Sbjct: 59  GRIVEIYGPESSGKTTVALHAVAMVQQHGGTAAYIDAENAMDPKYAAALGVNIDELLLSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQ LEI D LV SGA+DI+V+DSVAAL PRAEIEGDMG++  G+QARLMSQALRKL
Sbjct: 119 PDTGEQGLEIADELVASGAIDILVVDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + +I+++K I +FINQ+R K+G++FG+PE T GG ALKFY++VR+++RR   IK+   I 
Sbjct: 179 SGAINKTKTIALFINQIREKVGIVFGNPEITPGGRALKFYATVRMEVRRSEQIKNGADII 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+T++KVVKNK+A PFK    DIMYG+GIS  GEL+D+ V+  I++K+G+W++++G+R+
Sbjct: 239 GNRTKIKVVKNKVAPPFKTAIVDIMYGQGISQSGELVDMAVEKDIIEKAGSWYAYQGERI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           GQGRE++K +L  + E+   IE  +R   G+  D ++ +  I T
Sbjct: 299 GQGREHAKSYLETHEELRRTIEKQVRLAYGMSPDHVIDQADIET 342


>gi|52630773|gb|AAU84854.1| RecA [Burkholderia plantarii]
          Length = 253

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/252 (75%), Positives = 224/252 (88%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 2   EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTEAFID 61

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+VD+IVIDSVAAL P+AE
Sbjct: 62  AEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSVDMIVIDSVAALVPKAE 121

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           IEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNA
Sbjct: 122 IEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNA 181

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+
Sbjct: 182 LKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRESIFDILYGEGISRQGEI 241

Query: 283 IDLGVKASIVDK 294
           IDLGV+A IVDK
Sbjct: 242 IDLGVQAKIVDK 253


>gi|312866826|ref|ZP_07727039.1| RecA protein [Streptococcus parasanguinis F0405]
 gi|322390449|ref|ZP_08063969.1| recombination protein A [Streptococcus parasanguinis ATCC 903]
 gi|311097609|gb|EFQ55840.1| RecA protein [Streptococcus parasanguinis F0405]
 gi|321142848|gb|EFX38306.1| recombination protein A [Streptococcus parasanguinis ATCC 903]
          Length = 381

 Score =  398 bits (1022), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/332 (57%), Positives = 258/332 (77%), Gaps = 6/332 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  EREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KD+  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKDTNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAW+S+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAMVEIMYGEGISRTGELVKIATDLDIIQKAGAWYSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338
           GQG EN+K FL ++ EI + I+  +R + GL+
Sbjct: 316 GQGSENAKKFLADHPEIFDEIDHKVRVHFGLI 347


>gi|52630771|gb|AAU84853.1| RecA [Burkholderia kururiensis]
          Length = 251

 Score =  398 bits (1022), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/251 (75%), Positives = 222/251 (88%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   ENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA KLGV++  LLISQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AE
Sbjct: 61  AEHALDVQYASKLGVNVPELLISQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           IEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNA
Sbjct: 121 IEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNA 180

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+
Sbjct: 181 LKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAVFDILYGEGISRQGEI 240

Query: 283 IDLGVKASIVD 293
           IDLGV+A IVD
Sbjct: 241 IDLGVQAKIVD 251


>gi|28896710|ref|NP_803060.1| recombinase A [Streptococcus pyogenes SSI-1]
 gi|94991376|ref|YP_599476.1| recombinase A [Streptococcus pyogenes MGAS10270]
 gi|94995287|ref|YP_603385.1| recombinase A [Streptococcus pyogenes MGAS10750]
 gi|315666320|ref|NP_665604.3| recombinase A [Streptococcus pyogenes MGAS315]
 gi|25453246|sp|Q8K5K0|RECA_STRP3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|122986801|sp|Q1J495|RECA_STRPF RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123257894|sp|Q1JEH7|RECA_STRPD RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|28811964|dbj|BAC64893.1| putative recombination protein [Streptococcus pyogenes SSI-1]
 gi|94544884|gb|ABF34932.1| RecA protein [Streptococcus pyogenes MGAS10270]
 gi|94548795|gb|ABF38841.1| RecA protein [Streptococcus pyogenes MGAS10750]
          Length = 378

 Score =  398 bits (1022), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/326 (58%), Positives = 256/326 (78%), Gaps = 6/326 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KDS  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGTTQIKGTGDQKDSSI 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK  E +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332
           GQG EN+K +L ++ ++ + I+  +R
Sbjct: 316 GQGSENAKRYLADHPQLFDEIDRKVR 341


>gi|284050628|ref|ZP_06380838.1| recombinase A [Arthrospira platensis str. Paraca]
          Length = 404

 Score =  398 bits (1022), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/322 (59%), Positives = 251/322 (77%), Gaps = 3/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL + L+QI++ +GKG+I++LG    +   +E +SSG+L LD+ALG GG P+GR++
Sbjct: 48  EKQKALNSVLNQIEKSFGKGSIVRLGDSARM--KVETISSGALTLDLALG-GGLPRGRVI 104

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH IA+ QKTGG  AFVDAEHALD  YA  LGVD++NLL+SQPDTG
Sbjct: 105 EIYGPESSGKTTLALHAIAEIQKTGGIAAFVDAEHALDPTYAAALGVDIENLLVSQPDTG 164

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D LVRS AVDI+V+DSVAAL PRAEIEGDMG+S  G+QARLMSQALRK+T +I
Sbjct: 165 EMALEIVDQLVRSVAVDIVVVDSVAALVPRAEIEGDMGDSHMGLQARLMSQALRKITGNI 224

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C ++F+NQ+R KIG+++G+PETTTGGNALKFY+SVRLDIRR  ++K      G + 
Sbjct: 225 GKSGCTVIFLNQLRQKIGIVYGNPETTTGGNALKFYASVRLDIRRTQTLKKGSDEYGIRA 284

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV KNK+A PF+  EFDI++G+GIS  G LIDL  +  ++ + GAW+S+  + +GQGR
Sbjct: 285 KVKVAKNKVAPPFRIAEFDIIFGQGISTIGCLIDLAEETGVIKRKGAWYSYNNENIGQGR 344

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           + +  +++EN    E I+  +R
Sbjct: 345 DRTITYMQENPAFTEEIDKRVR 366


>gi|56606857|gb|AAW02813.1| recombinase A [Mannheimia haemolytica]
 gi|56606859|gb|AAW02814.1| recombinase A [Mannheimia haemolytica]
 gi|56606861|gb|AAW02815.1| recombinase A [Mannheimia haemolytica]
 gi|56606863|gb|AAW02816.1| recombinase A [Mannheimia glucosida]
          Length = 270

 Score =  398 bits (1022), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/272 (69%), Positives = 229/272 (84%), Gaps = 2/272 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG   ++   IE VS+GSLGLD ALGIGG P GRIVEIYGPESSGKTTL L  +AQ+
Sbjct: 1   IMKLGDTQAL--DIEAVSTGSLGLDSALGIGGLPMGRIVEIYGPESSGKTTLTLSVVAQA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK G TCAF+DAEHALD IYARKLGVD   LLISQPD GEQALEI D LVRSGAVD+I++
Sbjct: 59  QKNGKTCAFIDAEHALDPIYARKLGVDTDGLLISQPDNGEQALEICDALVRSGAVDVIIV 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT++I  + C+++FINQ+RMKIGVMF
Sbjct: 119 DSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIKATNCLVIFINQIRMKIGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETTTGGNALKFY+SVRLDIRR G +KD D + G++T+VK+VKNK+A PF++V+FDIM
Sbjct: 179 GNPETTTGGNALKFYASVRLDIRRSGVVKDGDEVIGSETKVKIVKNKVAPPFREVQFDIM 238

Query: 272 YGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
           YGEGI+   EL+ L      ++K+GAWFS++G
Sbjct: 239 YGEGIARMNELLILAESHGFINKAGAWFSYEG 270


>gi|23321291|gb|AAN23140.1| RecA protein [Vibrio cholerae]
 gi|23321293|gb|AAN23141.1| RecA protein [Vibrio cholerae]
 gi|23321295|gb|AAN23142.1| RecA protein [Vibrio cholerae]
          Length = 289

 Score =  398 bits (1022), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 181/275 (65%), Positives = 232/275 (84%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV+
Sbjct: 1   LGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVN 60

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR+
Sbjct: 61  IDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARM 120

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           +SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+
Sbjct: 121 LSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGA 180

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW
Sbjct: 181 IKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAW 240

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           +S+ G ++GQG+ N+  +L+EN EIA+ ++  LR+
Sbjct: 241 YSYNGDKIGQGKANACKYLKENPEIAKTLDKKLRE 275


>gi|325695333|gb|EGD37233.1| recombination protein A [Streptococcus sanguinis SK150]
          Length = 384

 Score =  398 bits (1022), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/332 (57%), Positives = 259/332 (78%), Gaps = 6/332 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGAIM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK    +KD+  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDEKDTNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GELI +     I+ K+GAW+S+  +++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338
           GQG EN+K +L ++ E+ + I+  +R   GL+
Sbjct: 316 GQGSENAKKYLADHPEVFDEIDRQVRVRYGLI 347


>gi|324992642|gb|EGC24563.1| recombination protein A [Streptococcus sanguinis SK405]
 gi|327460045|gb|EGF06384.1| recombination protein A [Streptococcus sanguinis SK1]
 gi|327472191|gb|EGF17628.1| recombination protein A [Streptococcus sanguinis SK408]
 gi|327488635|gb|EGF20435.1| recombination protein A [Streptococcus sanguinis SK1058]
          Length = 382

 Score =  397 bits (1021), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/332 (57%), Positives = 259/332 (78%), Gaps = 6/332 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGAIM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK    +KD+  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDEKDTNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GELI +     I+ K+GAW+S+  +++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338
           GQG EN+K +L ++ E+ + I+  +R   GL+
Sbjct: 316 GQGSENAKKYLADHPEVFDEIDRQVRVRYGLI 347


>gi|317056864|ref|YP_004105331.1| recA protein [Ruminococcus albus 7]
 gi|315449133|gb|ADU22697.1| recA protein [Ruminococcus albus 7]
          Length = 398

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/331 (58%), Positives = 257/331 (77%), Gaps = 5/331 (1%)

Query: 8   NIVD---KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           NI D   K KALE A++ I++ +GKGAIM+LG   ++   +E + +GS+ LD+ALGIGG 
Sbjct: 16  NITDAEEKKKALETAIAFIEKQFGKGAIMKLGDARAM--DVEAIPTGSMMLDMALGIGGV 73

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GRI+EIYGPESSGKTT+ALH IA++QK GG  AF+D EHALD +YA+ LGVD+ ++L+
Sbjct: 74  PRGRIIEIYGPESSGKTTVALHIIAETQKMGGEVAFIDVEHALDPVYAKNLGVDIDSMLV 133

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD+GEQALEI + L RSGA+D IVIDSVAA+  +AEI+G+MG++  G  ARLMSQA+R
Sbjct: 134 SQPDSGEQALEIAEALARSGAIDCIVIDSVAAMVTKAEIDGEMGDTHVGQLARLMSQAMR 193

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT  +S+S    VFINQ+R KIGVM+G+PETT GG ALKFY+SVR+++RR   IKD   
Sbjct: 194 KLTGVVSKSNTTCVFINQVREKIGVMYGNPETTPGGRALKFYASVRIEVRRGEQIKDGGE 253

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + GN+T+ KVVKNK+A PFK+ EFDIMYG+GIS  GE++D  V   IV K GAWFS++  
Sbjct: 254 VLGNRTKCKVVKNKVAPPFKECEFDIMYGKGISRVGEVLDTAVDLGIVKKGGAWFSYEDY 313

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNA 335
           +LGQGR+NSK FL ++ +I   IE+ ++ ++
Sbjct: 314 KLGQGRDNSKQFLLDHPDIMAEIENKIKASS 344


>gi|148879133|emb|CAM58517.1| RecA protein [Mycobacterium llatzerense]
          Length = 289

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 184/280 (65%), Positives = 232/280 (82%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAE
Sbjct: 9   ISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 68

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA+KLGVD   LL+SQPDTGEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIE
Sbjct: 69  HALDPDYAQKLGVDTDALLVSQPDTGEQALEIADMLVRSGAIDILVIDSVAALVPRAEIE 128

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFGSPETTTGG ALK
Sbjct: 129 GEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALK 188

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVR+D+RR+ ++KD     GN+TR K+VKNK+A PFKQ EFDI+YG+GIS  G LID
Sbjct: 189 FYASVRIDVRRIETLKDGTDAVGNRTRAKIVKNKVAPPFKQAEFDILYGKGISKEGSLID 248

Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           +GV+   + KSG+WF++ G++LGQG+EN++ +L +N + A
Sbjct: 249 MGVEHGFIRKSGSWFTYDGEQLGQGKENARNYLLQNPDAA 288


>gi|268609959|ref|ZP_06143686.1| recA protein [Ruminococcus flavefaciens FD-1]
          Length = 396

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/318 (59%), Positives = 249/318 (78%), Gaps = 2/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK  AL+ AL QI++ YG GAIM+LG   ++   ++ + +GS+ LD+ALGIGG P+GRIV
Sbjct: 20  DKKTALDGALKQIEKKYGAGAIMRLGQTKTL--NVDAIPTGSMTLDMALGIGGVPRGRIV 77

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+AL  IAQ+QK  G  AF+D EHALD +YA+ LGV+++NLL+SQPD+G
Sbjct: 78  EIYGPESSGKTTVALSIIAQAQKMDGEVAFIDVEHALDPVYAQALGVNIENLLVSQPDSG 137

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L+RSGA+D+IV+DS+AA+T RAEI+G+MG+   G  ARLMSQA+RKLT++I
Sbjct: 138 EQALEIAEALIRSGAIDVIVLDSIAAMTTRAEIDGEMGDLHVGQLARLMSQAMRKLTAAI 197

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S C+ +FINQ+R KIGVM+G+PETT GG ALKFYSSVR+++R+   IK    I G  T
Sbjct: 198 SKSNCVAIFINQIREKIGVMYGNPETTPGGRALKFYSSVRIEVRKGEVIKSGTDIVGAST 257

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R K+VKNK+A PFK+ EFD+MYG GIS  GE++DL V   I+ K G+WFS+K Q+LGQGR
Sbjct: 258 RCKIVKNKVAPPFKECEFDLMYGSGISRTGEVLDLAVDLDIIKKGGSWFSYKDQKLGQGR 317

Query: 311 ENSKIFLRENIEIAENIE 328
           +N K  L+ +  + + IE
Sbjct: 318 DNVKELLKNDEALMKEIE 335


>gi|148879011|emb|CAM07021.1| RecA protein [Mycobacterium llatzerense]
          Length = 290

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 184/280 (65%), Positives = 232/280 (82%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAE
Sbjct: 10  ISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 69

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA+KLGVD   LL+SQPDTGEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIE
Sbjct: 70  HALDPDYAQKLGVDTDALLVSQPDTGEQALEIADMLVRSGAIDILVIDSVAALVPRAEIE 129

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFGSPETTTGG ALK
Sbjct: 130 GEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALK 189

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVR+D+RR+ ++KD     GN+TR K+VKNK+A PFKQ EFDI+YG+GIS  G LID
Sbjct: 190 FYASVRIDVRRIETLKDGTDAVGNRTRAKIVKNKVAPPFKQAEFDILYGKGISKEGSLID 249

Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           +GV+   + KSG+WF++ G++LGQG+EN++ +L +N + A
Sbjct: 250 MGVEHGFIRKSGSWFTYDGEQLGQGKENARNYLLQNPDAA 289


>gi|148879015|emb|CAM07023.1| RecA protein [Mycobacterium llatzerense]
          Length = 288

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 184/280 (65%), Positives = 232/280 (82%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAE
Sbjct: 8   ISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 67

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA+KLGVD   LL+SQPDTGEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIE
Sbjct: 68  HALDPDYAQKLGVDTDALLVSQPDTGEQALEIADMLVRSGAIDILVIDSVAALVPRAEIE 127

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFGSPETTTGG ALK
Sbjct: 128 GEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALK 187

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVR+D+RR+ ++KD     GN+TR K+VKNK+A PFKQ EFDI+YG+GIS  G LID
Sbjct: 188 FYASVRIDVRRIETLKDGTDAVGNRTRAKIVKNKVAPPFKQAEFDILYGKGISKEGSLID 247

Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           +GV+   + KSG+WF++ G++LGQG+EN++ +L +N + A
Sbjct: 248 MGVEHGFIRKSGSWFTYDGEQLGQGKENARNYLLQNPDAA 287


>gi|218245807|ref|YP_002371178.1| recombinase A [Cyanothece sp. PCC 8801]
 gi|257058853|ref|YP_003136741.1| recombinase A [Cyanothece sp. PCC 8802]
 gi|226737754|sp|B7JZS9|RECA_CYAP8 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|218166285|gb|ACK65022.1| recA protein [Cyanothece sp. PCC 8801]
 gi|256589019|gb|ACU99905.1| recA protein [Cyanothece sp. PCC 8802]
          Length = 349

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/327 (59%), Positives = 254/327 (77%), Gaps = 4/327 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  DK KAL   L+QI+R +GKG+IM+LG    +   +E +SSGSL LD+ALG GG P+G
Sbjct: 6   NNPDKEKALGLVLNQIERNFGKGSIMRLGDAARMR--VETISSGSLTLDLALG-GGLPQG 62

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EIYGPESSGKTTLALH IA+ QK GG  AFVDAEHALD  Y+  LGVD+ NLL++QP
Sbjct: 63  RIIEIYGPESSGKTTLALHAIAEVQKAGGVAAFVDAEHALDPNYSNALGVDIDNLLVAQP 122

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGE ALEI D LVRS AVDI+VIDSVAAL PRAEIEG+MG++  G+QARLMS+ALRK+ 
Sbjct: 123 DTGESALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEGEMGDTQVGLQARLMSKALRKIA 182

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSIT 246
            +I +S C+++F+NQ+R KIGV +GSPE TTGGNALKFY+SVRLDIRR+ ++K   +   
Sbjct: 183 GNIGKSGCVVIFLNQLRQKIGVTYGSPEVTTGGNALKFYASVRLDIRRIQTLKKGSEGEY 242

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G + +VKV KNK+A PF+  EFDI++G+GIS  G ++DL  +  +V++ GAW+S+ G+ +
Sbjct: 243 GIRAKVKVAKNKVAPPFRIAEFDIIFGKGISRMGCMLDLAEQTDVVNRKGAWYSYNGENI 302

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333
            QGR+N+  +L +N E+A+ IE  +R+
Sbjct: 303 SQGRDNAVKYLEDNPEVADTIERQVRE 329


>gi|166079836|gb|ABY81640.1| recombinase A [Staphylococcus xylosus]
          Length = 319

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/314 (62%), Positives = 248/314 (78%), Gaps = 2/314 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKGA+M+LG   +    +  VSSGS+ LD ALG+GG+PKGRI+EIYGPESSGKTT+
Sbjct: 1   EKSFGKGAVMKLGDNEA--RKVSSVSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTV 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALH IA+ Q+ GG  AF+DAEHALD +YA  LGVD++NL +SQPD GEQ LEI +  VRS
Sbjct: 59  ALHAIAEVQRNGGVVAFIDAEHALDPVYAEALGVDIQNLYLSQPDHGEQGLEIAEAFVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +IS+S    VFINQ+
Sbjct: 119 GAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAISKSNTTAVFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           R K+GVMFG+PE T GG ALKFYSSVRL++RR   +K    I GN+T++KVVKNK+A PF
Sbjct: 179 REKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRTKIKVVKNKVAPPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           +  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G R+GQG+EN K +L+EN  +
Sbjct: 239 RVAEVDIMYGKGISKEGELIDLGVENEIVDKSGAWYSYNGDRMGQGKENVKSYLKENPAV 298

Query: 324 AENIESLLRQNAGL 337
              I+  LR+  G+
Sbjct: 299 KAEIDRKLREKLGI 312


>gi|296875595|ref|ZP_06899666.1| recombination protein A [Streptococcus parasanguinis ATCC 15912]
 gi|296433392|gb|EFH19168.1| recombination protein A [Streptococcus parasanguinis ATCC 15912]
          Length = 381

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/332 (57%), Positives = 258/332 (77%), Gaps = 6/332 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  EREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KD+  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKDTNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAW+S+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAMVEIMYGEGISRTGELVKIATDLDIIQKAGAWYSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338
           GQG EN+K FL ++ EI + I+  +R + GL+
Sbjct: 316 GQGSENAKKFLADHPEIFDEIDHKVRVHFGLI 347


>gi|166079849|gb|ABY81646.1| recombinase A [Staphylococcus auricularis]
          Length = 313

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/315 (61%), Positives = 246/315 (78%), Gaps = 2/315 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           +++ +GKGA+M+LG        +   SSGS+ LD ALG+GG+PKGRI+EIYGPESSGKTT
Sbjct: 1   LEKSFGKGAVMKLGDNKGRR--VSSTSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ QK  G  AF+DAEHALD  YA  LGVD+ NL +SQPD GEQ LEI +  VR
Sbjct: 59  VALHAIAEVQKKDGVAAFIDAEHALDPEYAEALGVDIDNLYLSQPDHGEQGLEIAEAFVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVDIIV+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +IS+S    +FINQ
Sbjct: 119 SGAVDIIVVDSVAALTPKAEIEGEMGDAHVGLQARLMSQALRKLSGAISKSNTTAIFINQ 178

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    + GN+T++KVVKNK+A P
Sbjct: 179 IREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEVVGNRTKLKVVKNKVAPP 238

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F+  E DIMYGEGIS  GELIDLGV+  I++KSGAW+S+  +R+GQG+EN K +L+EN E
Sbjct: 239 FRTAEVDIMYGEGISKEGELIDLGVENDIINKSGAWYSYNNERMGQGKENVKTYLKENPE 298

Query: 323 IAENIESLLRQNAGL 337
           +   IE  LR+  G+
Sbjct: 299 VRSEIEHKLREALGI 313


>gi|322392541|ref|ZP_08066001.1| recombination protein A [Streptococcus peroris ATCC 700780]
 gi|321144533|gb|EFX39934.1| recombination protein A [Streptococcus peroris ATCC 700780]
          Length = 383

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/332 (58%), Positives = 257/332 (77%), Gaps = 6/332 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 19  DREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 77  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++VIDSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +SI
Sbjct: 137 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 196

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KD+  
Sbjct: 197 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIKGTGDQKDTNV 256

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAW+S+KG+++
Sbjct: 257 GKETKIKVVKNKVAPPFKEALVEIMYGEGISRTGELLKIASDLDIIQKAGAWYSYKGEKI 316

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338
           GQG EN+K +L ++ E  + I+  +R   GL+
Sbjct: 317 GQGSENAKKYLADHPEAFDEIDHQVRVQYGLI 348


>gi|270293421|ref|ZP_06199630.1| RecA protein [Streptococcus sp. M143]
 gi|270278270|gb|EFA24118.1| RecA protein [Streptococcus sp. M143]
          Length = 382

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/334 (57%), Positives = 258/334 (77%), Gaps = 6/334 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  DREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++VIDSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KD+  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIKGTGDQKDTNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAW+S+K +++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           GQG EN+K +L ++ E+ + I+  +R   GL+ D
Sbjct: 316 GQGSENAKKYLADHPEVFDEIDHQVRVQYGLIED 349


>gi|209560226|ref|YP_002286698.1| recombinase A [Streptococcus pyogenes NZ131]
 gi|226693555|sp|P0C096|RECA_STRPZ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|209541427|gb|ACI62003.1| RecA protein [Streptococcus pyogenes NZ131]
          Length = 378

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 189/326 (57%), Positives = 256/326 (78%), Gaps = 6/326 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL++QPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLAQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KDS  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGTTQIKGTGDQKDSSI 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK  E +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332
           GQG EN+K +L ++ ++ + I+  +R
Sbjct: 316 GQGSENAKRYLADHPQLFDEIDRKVR 341


>gi|157100337|emb|CAP03334.1| RecA protein [Vibrio aestuarianus]
          Length = 278

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 185/280 (66%), Positives = 234/280 (83%), Gaps = 2/280 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTL 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RS
Sbjct: 59  TLELIAAAQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GA+D+IV+DSVAALT +AEIEG+MG+S  G  AR++SQA+RKLT ++ +S C+ +FINQ+
Sbjct: 119 GAIDVIVVDSVAALTXKAEIEGEMGDSXMGXXARMLSQAMRKLTGNLKQSNCMCIFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PF
Sbjct: 179 RMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
           KQ E  I+YG+G +  GEL+DLGVK  +V+K+GAW+S+ G
Sbjct: 239 KQAETQILYGQGFNREGELVDLGVKNKLVEKAGAWYSYNG 278


>gi|306517919|emb|CBL53383.1| recombination-repair protein [Photobacterium sp. CECT 7614]
          Length = 272

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/274 (67%), Positives = 232/274 (84%), Gaps = 2/274 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDQLLVSQPDTGEQALEIADALARSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           I+V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 ILVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ +
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKQAD 238

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
             I+YG G +  GEL+DLGVK  +++K+GAW+S+
Sbjct: 239 TQILYGLGFNRQGELVDLGVKHKMIEKAGAWYSY 272


>gi|71725931|gb|AAZ39083.1| homologous recombination protein [Exiguobacterium aurantiacum]
          Length = 289

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/291 (64%), Positives = 237/291 (81%), Gaps = 2/291 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG      + + V  SGS+ LDIALG GG+P+GR++E+YGPESSGKTT+
Sbjct: 1   EKQFGKGSIMRLGENTD--QQVSVTPSGSIALDIALGAGGYPRGRVIEVYGPESSGKTTV 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALH IA+ QK GG  AFVDAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRS
Sbjct: 59  ALHAIAEVQKRGGQAAFVDAEHALDPKYAKNLGVNIDELLLSQPDTGEQALEIAEALVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVDI+V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ + ++SK I++FINQ+
Sbjct: 119 GAVDILVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGATNKSKTIVIFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           R KIG+MFG+PETT GG ALKFYSSVRL++RR  ++K    + GN+T++KVVKNK+A PF
Sbjct: 179 REKIGIMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGQDMVGNRTKIKVVKNKIAPPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           K  E DIMYGEGIS  GELID+G    IV KSGAW+S+  +RLGQGREN+K
Sbjct: 239 KTAEVDIMYGEGISREGELIDIGADLDIVQKSGAWYSYNEERLGQGRENAK 289


>gi|217967549|ref|YP_002353055.1| recA protein [Dictyoglomus turgidum DSM 6724]
 gi|217336648|gb|ACK42441.1| recA protein [Dictyoglomus turgidum DSM 6724]
          Length = 356

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/328 (60%), Positives = 266/328 (81%), Gaps = 2/328 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           ++K KALE+A+ QI++ +GKGAIM+LGSQ   F+ + V+ +G L LD ALG+GG P+GRI
Sbjct: 1   MEKEKALESAIFQIEKQFGKGAIMRLGSQ-ERFQ-VPVIPTGILTLDYALGVGGVPRGRI 58

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +E++GPE SGKTT+AL  IA +QK GG  AF+DAEHA D  YARK+GV+L+NLLISQPDT
Sbjct: 59  IELFGPEGSGKTTVALQIIASAQKMGGVAAFIDAEHAFDPNYARKIGVNLENLLISQPDT 118

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI ++LVRSG VD+IVIDSVAAL PRAE+EG+MG++  G+QARLMSQALRKLT  
Sbjct: 119 GEQALEIAEILVRSGGVDVIVIDSVAALVPRAELEGEMGDAFIGLQARLMSQALRKLTGV 178

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SK + +FINQ+R K+GV FG+PETT GG ALKFY+SVR+D+R+  S+K+   +TG +
Sbjct: 179 ISKSKTVAIFINQLREKVGVFFGNPETTPGGRALKFYASVRIDVRKAESMKEGSEVTGTK 238

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PF++ EF+++YGEGIS  G ++D GV+A ++++SG W+ +K  RLGQG
Sbjct: 239 VKVKVVKNKVAPPFREGEFELIYGEGISREGCILDAGVEAKVIERSGTWYIYKDIRLGQG 298

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           REN+K +L+E+ EIA+ IE  +R+  G 
Sbjct: 299 RENAKTYLKEHPEIADEIEREVRKLWGF 326


>gi|272894044|gb|ACZ96548.1| RecA [Burkholderia lata]
          Length = 274

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/262 (70%), Positives = 229/262 (87%)

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEIT
Sbjct: 1   SGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEIT 60

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C++
Sbjct: 61  DALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLV 120

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKN
Sbjct: 121 IFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKN 180

Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317
           K++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FL
Sbjct: 181 KVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFL 240

Query: 318 RENIEIAENIESLLRQNAGLVA 339
           REN EIA  IE+ +R++ G+VA
Sbjct: 241 RENPEIAREIENRIRESLGVVA 262


>gi|319946053|ref|ZP_08020302.1| recombination protein A [Streptococcus australis ATCC 700641]
 gi|319747861|gb|EFW00106.1| recombination protein A [Streptococcus australis ATCC 700641]
          Length = 380

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/334 (57%), Positives = 258/334 (77%), Gaps = 6/334 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  EREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++VIDSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KD+  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKDTNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     ++ K+GAW+S+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAMVEIMYGEGISRTGELLKIATDLDLIQKAGAWYSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           GQG EN+K +L ++ EI + I+  +R   GL+ D
Sbjct: 316 GQGSENAKKYLADHPEIFDEIDHQVRVRFGLIDD 349


>gi|229551732|ref|ZP_04440457.1| recombination protein A [Lactobacillus rhamnosus LMS2-1]
 gi|258539129|ref|YP_003173628.1| recombination protein RecA [Lactobacillus rhamnosus Lc 705]
 gi|229314911|gb|EEN80884.1| recombination protein A [Lactobacillus rhamnosus LMS2-1]
 gi|257150805|emb|CAR89777.1| Protein recA [Lactobacillus rhamnosus Lc 705]
          Length = 350

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 187/344 (54%), Positives = 263/344 (76%), Gaps = 2/344 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   ++ +AL  AL +I++ +GKGAIM++G +  +   +  VSSGSL +D ALG+GG P+
Sbjct: 1   MAETERQEALATALKKIEKNFGKGAIMRMGDK--VETRVSAVSSGSLAIDDALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYGPESSGKTT+ALH +A  Q+ GGT A++DAE+A+D  YA  LGV++  LL+SQ
Sbjct: 59  GRIVEIYGPESSGKTTVALHAVAMVQQHGGTAAYIDAENAMDPKYAAALGVNIDELLLSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQ LEI D LV SGA+DI+V+DSVAAL PRAEIEGDMG++  G+QARLMSQALRKL
Sbjct: 119 PDTGEQGLEIADELVASGAIDILVVDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + +I+++K I +FINQ+R K+G++FG+PE T GG ALKFY++VR+++RR   IK+   I 
Sbjct: 179 SGAINKTKTIALFINQIREKVGIVFGNPEITPGGRALKFYATVRMEVRRSEQIKNGADII 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+T++KVVKNK+A PFK    DIMYG+GIS  GEL+D+ V+  I++K+G+W++++G+R+
Sbjct: 239 GNRTKIKVVKNKVAPPFKTAIVDIMYGQGISQSGELVDMAVEKDIIEKAGSWYAYQGERI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           GQGRE++K +L  + E+   IE  +R   G+  D ++ +    T
Sbjct: 299 GQGREHAKSYLETHEELRRTIEKQVRLAYGMSPDHVIDQADTET 342


>gi|104773709|ref|YP_618689.1| recombinase A [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|122983993|sp|Q1GB51|RECA_LACDA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|103422790|emb|CAI97429.1| RecA protein (Recombinase A) [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 331

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 189/323 (58%), Positives = 261/323 (80%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K  ALEAAL +I++ +GKGA+M++G +  +   I  V SGSL LD ALG+GG+P+GRIV
Sbjct: 5   EKKAALEAALKKIEKNFGKGAVMRMGEK--VDTQISTVPSGSLALDAALGVGGYPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+  L++SQP+TG
Sbjct: 63  EIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDQLILSQPNTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL+ +I
Sbjct: 123 EEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK   ++ GN+ 
Sbjct: 183 AKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSTNVIGNRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+     IVDK+GAW+S+ G+++GQGR
Sbjct: 243 KIKVVKNKVAPPFKVAEVDIMYGQGISQSGELLDMAADQDIVDKAGAWYSYHGEKIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           EN+K +L E+ +++E+I++ +R+
Sbjct: 303 ENAKKYLEEHPDVSEDIQTQVRK 325


>gi|269784288|emb|CBH50789.1| recA protein [Vibrio sp. C 2.4]
          Length = 270

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/272 (68%), Positives = 230/272 (84%), Gaps = 2/272 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +Q
Sbjct: 1   MRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VID
Sbjct: 59  KVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG
Sbjct: 119 SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I+Y
Sbjct: 179 NPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILY 238

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           G+G +  GELIDLGVK  +V+K+GAW+S+ G+
Sbjct: 239 GKGFNREGELIDLGVKNKLVEKAGAWYSYNGE 270


>gi|23321297|gb|AAN23143.1| RecA protein [Vibrio cholerae]
          Length = 289

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 181/275 (65%), Positives = 231/275 (84%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV+
Sbjct: 1   LGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVN 60

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR+
Sbjct: 61  IDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARM 120

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           +SQA+RKLT +  +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+
Sbjct: 121 LSQAMRKLTGNSKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGA 180

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW
Sbjct: 181 IKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAW 240

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           +S+ G ++GQG+ N+  +L+EN EIA+ ++  LR+
Sbjct: 241 YSYNGDKIGQGKANACKYLKENPEIAKTLDKKLRE 275


>gi|289524808|emb|CBJ94460.1| recA protein [Vibrio sp. Cmf 11.16]
          Length = 267

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 182/260 (70%), Positives = 224/260 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +QK G TCAF+DAE
Sbjct: 8   VETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFIDAE 67

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIE
Sbjct: 68  HALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIE 127

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 128 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALK 187

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GELID
Sbjct: 188 FYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELID 247

Query: 285 LGVKASIVDKSGAWFSFKGQ 304
           LGVK  +V+K+GAW+S+ G+
Sbjct: 248 LGVKNKLVEKAGAWYSYNGE 267


>gi|52630789|gb|AAU84862.1| RecA [Burkholderia caryophylli]
          Length = 253

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 187/253 (73%), Positives = 224/253 (88%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF
Sbjct: 1   VAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAF 60

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           +DAEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+
Sbjct: 61  IDAEHALDIQYAAKLGVNVADLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPK 120

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
           AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGG
Sbjct: 121 AEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGG 180

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           NALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  G
Sbjct: 181 NALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQG 240

Query: 281 ELIDLGVKASIVD 293
           E+IDLGV+A IVD
Sbjct: 241 EIIDLGVQAKIVD 253


>gi|125719024|ref|YP_001036157.1| recombinase A [Streptococcus sanguinis SK36]
 gi|166220686|sp|A3CR02|RECA_STRSV RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|125498941|gb|ABN45607.1| RecA protein, putative [Streptococcus sanguinis SK36]
          Length = 382

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 191/332 (57%), Positives = 258/332 (77%), Gaps = 6/332 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGAIM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK    +KD+  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDEKDTNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GELI +     I+ K+GAW+S+  +++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338
           GQG EN+K +L ++ E+   I+  +R   GL+
Sbjct: 316 GQGSENAKKYLADHPEVFGEIDRQVRVRYGLI 347


>gi|330444009|ref|YP_004376995.1| recA protein [Chlamydophila pecorum E58]
 gi|197091910|gb|ACH42162.1| RecA [Chlamydophila pecorum E58]
 gi|328807119|gb|AEB41292.1| recA protein [Chlamydophila pecorum E58]
          Length = 348

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/345 (55%), Positives = 263/345 (76%), Gaps = 2/345 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN+ D+ KALEAA++ I++ +G G++M LG   +  E I V+ +G+L LD+ALGIGG PK
Sbjct: 1   MNLPDRKKALEAAIAYIEKQFGSGSVMSLGKHSATHE-ISVIKTGALSLDLALGIGGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEI+GPESSGKTTLA H +A +QK GG  A++DAEHALD  YA  +GV++ +L+ISQ
Sbjct: 60  GRIVEIFGPESSGKTTLATHIVANAQKKGGIAAYIDAEHALDPSYAALIGVNVDDLMISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GE AL I ++L RSGAVD++VIDSVAAL P++E+EGD+G+   G+QAR+MSQALRKL
Sbjct: 120 PDCGEDALSIAELLARSGAVDVLVIDSVAALVPKSELEGDIGDVHVGLQARMMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI- 245
           TS+++RS+   +FINQ+R KIGV FG+PETTTGG ALKFYSS+RLDIRR+GSIK  DS  
Sbjct: 180 TSTLARSQTCAIFINQIREKIGVSFGNPETTTGGRALKFYSSIRLDIRRIGSIKSNDSSD 239

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+ +VKV KNK+A PFK  EFDI++ EGIS  G ++DL V+ +I++K G+WF+++ ++
Sbjct: 240 IGNRIKVKVAKNKLAPPFKVAEFDILFNEGISSAGCILDLAVERNIIEKKGSWFNYQDKK 299

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           LGQGRE  +  L++N ++   +E  L + +       L++ A  T
Sbjct: 300 LGQGREFVREELKKNPKLFAELEKRLTEESPKAPTESLEDSASQT 344


>gi|254443443|ref|ZP_05056919.1| protein RecA [Verrucomicrobiae bacterium DG1235]
 gi|198257751|gb|EDY82059.1| protein RecA [Verrucomicrobiae bacterium DG1235]
          Length = 353

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/318 (58%), Positives = 251/318 (78%), Gaps = 3/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ K +E A+S I + +G+G+IM+LGS   +   ++V+S+GS+ +D+ALG+GG P+GRI 
Sbjct: 14  DREKNVELAISAITKQFGEGSIMRLGSGSKL--NVDVISTGSISIDLALGVGGLPRGRIC 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ L  IA++Q+ GG  AF+D EHALD  YARKLGV++ +LL+SQPD+G
Sbjct: 72  EIYGPESSGKTTMCLSLIAEAQRKGGLAAFIDVEHALDPKYARKLGVNVDDLLVSQPDSG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E AL IT+ L+RS A+D+IVIDSVAAL  ++E++G MG++  G QARLMSQA+R+LT+ +
Sbjct: 132 EDALNITETLIRSNAIDVIVIDSVAALISKSELDGQMGDATVGSQARLMSQAMRRLTAIV 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT-GNQ 249
           S++KCI +F NQ+R KIGVMFGSPETT GG ALKF+SSVR+DIRR+G IKD   +  GN+
Sbjct: 192 SKTKCICLFTNQIREKIGVMFGSPETTPGGRALKFFSSVRMDIRRIGQIKDNSGVVKGNR 251

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TR+K+VKNK+A PF + EFDIMY EGIS  G ++DLG++  +++K GAW S+KG  +GQG
Sbjct: 252 TRIKMVKNKVAPPFTEAEFDIMYNEGISRTGSIVDLGIEHKVLEKKGAWISYKGDLIGQG 311

Query: 310 RENSKIFLRENIEIAENI 327
           RE +K  L EN EI E I
Sbjct: 312 REAAKAHLSENPEIFEEI 329


>gi|259502853|ref|ZP_05745755.1| recombination protein A [Lactobacillus antri DSM 16041]
 gi|259169220|gb|EEW53715.1| recombination protein A [Lactobacillus antri DSM 16041]
          Length = 369

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/354 (55%), Positives = 269/354 (75%), Gaps = 12/354 (3%)

Query: 8   NIVDKSKA-LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           N+ D+ KA L+ AL +I++ +GKG+IM++G    +   I  +SSGSL +D ALG+GG+P+
Sbjct: 12  NLADQRKAALDKALQKIEKDFGKGSIMRMGDAADM--KIATISSGSLAIDKALGVGGYPR 69

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYGPESSGKTT+ALH +A+ Q+ GGT A++DAE+ALD  YA  LGVD+ NLL+SQ
Sbjct: 70  GRIVEIYGPESSGKTTVALHAVAEVQRQGGTVAYIDAENALDPQYAEALGVDVDNLLLSQ 129

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGE+ L I D L+ + A+D++VIDSVAAL P+AEI+GDMG+   G+QARLMSQALRKL
Sbjct: 130 PDTGEEGLAIADALIATSAIDLVVIDSVAALVPQAEIDGDMGDHHVGLQARLMSQALRKL 189

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           +  I+++K I +FINQ+R K+GVMFG+PETTTGG ALKFYS++R++IRR   IK+   + 
Sbjct: 190 SGEINKTKTIAIFINQIREKVGVMFGNPETTTGGRALKFYSTIRMEIRRAEQIKNGTDVV 249

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G++ +VK+VKNK+A PFK+ E DIMYGEGIS  GEL+D+ V+  +V KSGAW+S+  +R+
Sbjct: 250 GSKAKVKIVKNKVAPPFKRCEVDIMYGEGISKTGELLDMAVEQDLVKKSGAWYSYGNERI 309

Query: 307 GQGRENSKIFLRENIEIAENIESLLR-QNAGLVADSLLQEPAINTKDDADKDDT 359
           GQGREN+K +L      A++ +S++   N   VA+ +  +P   +K  AD  DT
Sbjct: 310 GQGRENAKKWL------ADHPDSMMELMNKVRVANGM--KPLEESKKPADDGDT 355


>gi|87300918|ref|ZP_01083760.1| recombinase A [Synechococcus sp. WH 5701]
 gi|87284789|gb|EAQ76741.1| recombinase A [Synechococcus sp. WH 5701]
          Length = 399

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/323 (58%), Positives = 250/323 (77%), Gaps = 3/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL   L QI+R +GKG+IM+LG    +   +E + +G+L LD+ALG GG+PKGR+V
Sbjct: 27  ERDKALNLVLGQIERNFGKGSIMRLGDASRMR--VETMPTGALTLDLALG-GGYPKGRVV 83

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL LH IA++Q+ GG  AFVDAEHALD +YA  LGVD++NLL+SQPDTG
Sbjct: 84  EVYGPESSGKTTLTLHAIAEAQRRGGVAAFVDAEHALDPVYAAALGVDVENLLVSQPDTG 143

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D LVRS AVDI+V+DSVAALTPRAEIEG+MG+   G QARLMSQA+RK+T +I
Sbjct: 144 EMALEIVDQLVRSAAVDIVVVDSVAALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNI 203

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C ++F+NQ+R KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K      G + 
Sbjct: 204 GKSGCTVIFLNQLRQKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRA 263

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV KNK+A PF+  EFDI++G GIS  G +IDL  +  +V + GAW+S+ G  +GQGR
Sbjct: 264 KVKVAKNKVAPPFRIAEFDILFGRGISTLGCVIDLAEETGVVIRKGAWYSYGGDNIGQGR 323

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           +N+  +L +N E  E IE+ +R+
Sbjct: 324 DNTINWLEQNPEQKEQIEAEVRR 346


>gi|307711310|ref|ZP_07647730.1| protein RecA [Streptococcus mitis SK321]
 gi|307616826|gb|EFN96006.1| protein RecA [Streptococcus mitis SK321]
          Length = 384

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/357 (55%), Positives = 268/357 (75%), Gaps = 9/357 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  EREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KD+  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIKGTGDQKDTNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAW+S+K +++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           GQG EN+K +L +N E+   I+  +R   GL+     +E A + KD+  + D+ N E
Sbjct: 316 GQGSENAKKYLADNPEVFAEIDHQVRVQFGLIDG---EEAAESKKDEVAQVDSVNEE 369


>gi|269215585|ref|ZP_06159439.1| protein RecA [Slackia exigua ATCC 700122]
 gi|269131072|gb|EEZ62147.1| protein RecA [Slackia exigua ATCC 700122]
          Length = 349

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/333 (58%), Positives = 252/333 (75%), Gaps = 2/333 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   +E    DK  +L+    QI++ +GKG+IM+LG   S  E + V+ +G+L LD ALG
Sbjct: 1   MARTQEPKTYDKPDSLKLTTDQIEKKFGKGSIMKLGEGSSDLE-VGVIPTGALALDAALG 59

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG P+GRI+EIYGPESSGKTTLAL  IA++Q  GG  AF+DAEHALD  YA +LGVD+ 
Sbjct: 60  IGGVPRGRIIEIYGPESSGKTTLALQIIAEAQAAGGIVAFIDAEHALDPTYAARLGVDID 119

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            +LISQPD GEQALEI DMLVRS A+  IVIDSVAAL PRAEIEG++G+   G QARLMS
Sbjct: 120 EVLISQPDYGEQALEICDMLVRSNAISAIVIDSVAALVPRAEIEGEIGDVTVGAQARLMS 179

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKL  S+S+S    +FINQ+R KIGV FG+PETTTGG ALKF++SVR+DIRR+ ++K
Sbjct: 180 QALRKLAGSLSKSNTTCIFINQLREKIGVSFGNPETTTGGRALKFFASVRIDIRRIETLK 239

Query: 241 DKDS-ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           ++++   GN+ R KVVKNK+A PF Q EFD+MYG GIS  G ++D+GV A +V KSGAW+
Sbjct: 240 NRNNEPVGNRVRAKVVKNKVAPPFHQAEFDLMYGTGISREGCIVDMGVDAGVVRKSGAWY 299

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           ++  +RLGQGRE +K  LR N ++ + IE+ +R
Sbjct: 300 TYGEERLGQGREAAKELLRTNPDLRDEIEAKVR 332


>gi|254410787|ref|ZP_05024565.1| protein RecA [Microcoleus chthonoplastes PCC 7420]
 gi|196182142|gb|EDX77128.1| protein RecA [Microcoleus chthonoplastes PCC 7420]
          Length = 361

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/327 (58%), Positives = 251/327 (76%), Gaps = 4/327 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  +K KAL   L+QI+R +GKG+IM+LG    +   +E +SSG++ LD+ALG GG P+G
Sbjct: 7   NSPEKEKALNLVLNQIERTFGKGSIMRLGDATRM--KVETISSGAITLDLALG-GGLPRG 63

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EIYGPESSGKTTLALH +A+ QK+GG  AFVDAEHALD  Y+  LGVD+ NLL+SQP
Sbjct: 64  RIIEIYGPESSGKTTLALHAVAEVQKSGGVAAFVDAEHALDPTYSSALGVDIANLLVSQP 123

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D+GE ALEI D LVRS AVDI+VIDSVAAL PRAEIEG+MG++  G+QARLMS+ALRK+ 
Sbjct: 124 DSGESALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEGEMGDTQVGLQARLMSKALRKIA 183

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSIT 246
            +I +S C ++F+NQ+R KIG+ +GSPE TTGGNALKFY SVRLDIRR+ ++K   +   
Sbjct: 184 GNIGKSGCTVIFLNQLRQKIGITYGSPEVTTGGNALKFYCSVRLDIRRIQTLKKASEGEY 243

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G + +VKV KNK+A PF+  EFDI++G+GIS  G L+DL  +  ++++ GAW+S+ G  +
Sbjct: 244 GIRAKVKVAKNKVAPPFRIAEFDIIFGQGISRLGCLVDLAEQTGVINRKGAWYSYNGDNI 303

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333
            QGR+NS  ++ EN EIA  IE  +R+
Sbjct: 304 AQGRDNSVRYIEENPEIAATIEQQVRE 330


>gi|223635947|emb|CAQ03775.1| recombination-repair protein [Enterovibrio nigricans]
          Length = 256

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/258 (72%), Positives = 224/258 (86%), Gaps = 2/258 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   IE VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  +
Sbjct: 1   KGSIMRLGDDRTM--DIETVSTGSLSLDIALGAGGLPFGRIVEIYGPESSGKTTLTLQVV 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK G TCAF+DAEHALD +YARKLGVD+ NLL+SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AEAQKVGKTCAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIADALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT++I  S  +++FINQ+RMKIG
Sbjct: 119 IVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D + GN TRVKVVKNK+A+PFKQ EF
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEVVGNDTRVKVVKNKIAAPFKQAEF 238

Query: 269 DIMYGEGISFFGELIDLG 286
            IMYGEGI+ +GEL+DLG
Sbjct: 239 QIMYGEGINLYGELVDLG 256


>gi|289524802|emb|CBJ94457.1| recA protein [Vibrio sp. C15.18]
 gi|289524804|emb|CBJ94458.1| recA protein [Vibrio sp. Cmf 5.9]
 gi|289524810|emb|CBJ94461.1| recA protein [Vibrio sp. Rd 14.3]
          Length = 270

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 185/272 (68%), Positives = 230/272 (84%), Gaps = 2/272 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +Q
Sbjct: 1   MRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VID
Sbjct: 59  KVGKTCAFIDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG
Sbjct: 119 SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I+Y
Sbjct: 179 NPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILY 238

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           G+G +  GELIDLGVK  +V+K+GAW+S+ G+
Sbjct: 239 GKGFNREGELIDLGVKNKLVEKAGAWYSYNGE 270


>gi|66819313|ref|XP_643316.1| recombinase A [Dictyostelium discoideum AX4]
 gi|122063512|sp|Q75JL2|RECAM_DICDI RecName: Full=Mitochondrial DNA repair protein recA homolog;
           AltName: Full=Recombinase A homolog
 gi|60471376|gb|EAL69336.1| recombinase A [Dictyostelium discoideum AX4]
 gi|76563897|tpd|FAA00018.1| TPA: RecA [Dictyostelium discoideum]
          Length = 452

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/345 (55%), Positives = 258/345 (74%), Gaps = 10/345 (2%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           +E  L ++++ +GKG +M+LGSQ S  + +EV+ SGS+GLDIALG+GG PKGR+ EI+GP
Sbjct: 90  MENVLKELEKSFGKGTLMKLGSQFST-QKVEVIPSGSMGLDIALGVGGLPKGRVTEIFGP 148

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLALH IAQ+QK GG C F+DAEHAL+  +A +LGV+L  L +SQPD GEQALE
Sbjct: 149 ESSGKTTLALHVIAQAQKAGGNCTFIDAEHALNPQWAARLGVNLDELFVSQPDNGEQALE 208

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L+RS  + +IV+DSVAAL PR EIEG+MG+S  G+QARLMSQALRKL+ ++  S C
Sbjct: 209 IVDSLLRSKTMSVIVVDSVAALVPRVEIEGEMGDSHLGVQARLMSQALRKLSPTLKDSNC 268

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           +L+FINQ+RMKIGVMFG+PE T+GGNALKF+SS+R+DIR+VG++K  D I  +Q + KVV
Sbjct: 269 VLIFINQIRMKIGVMFGNPEVTSGGNALKFFSSIRIDIRKVGTVKKGDDIIASQVKAKVV 328

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK+A PFK+  FDI +  GI+  GE+IDL V   I+DK G+W+S+   +L QGRE +K 
Sbjct: 329 KNKLAPPFKEAIFDIDFQSGINKTGEIIDLAVAEGIIDKMGSWYSYNDIKLDQGREKTKY 388

Query: 316 FL-RENIEIAENIESLLRQNAGLVADSLLQ-EPAINTKDDADKDD 358
            L +    +   IE+ LR       D L++ +P IN + + + +D
Sbjct: 389 LLEKTQPNLLVEIENKLR-------DKLIKSKPLINQQQEEEGND 426


>gi|115372449|ref|ZP_01459758.1| RecA protein [Stigmatella aurantiaca DW4/3-1]
 gi|115370662|gb|EAU69588.1| RecA protein [Stigmatella aurantiaca DW4/3-1]
          Length = 316

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 187/291 (64%), Positives = 242/291 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           + V++SGS+ LD ALG+GG+P+GR+VE++G ESSGKT+L+LH IAQ Q +GG  AF+DAE
Sbjct: 12  VAVIASGSVSLDRALGVGGYPRGRVVELFGNESSGKTSLSLHAIAQVQASGGVAAFIDAE 71

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YARKLGV ++ LLISQPDTGEQALEIT+ LVRSGAVD+IV+DSVAAL PRAEIE
Sbjct: 72  HALDVNYARKLGVRVEELLISQPDTGEQALEITEQLVRSGAVDLIVVDSVAALVPRAEIE 131

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKLT ++SRS   ++FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 132 GEMGDAHMGVQARLMSQALRKLTGAVSRSGTCIIFINQIRMKIGVMFGNPETTTGGNALK 191

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FYSSVRL+IRR G++K+ +SI G + RVKVVKNK+A PF++ EFD++YG GI   GE++D
Sbjct: 192 FYSSVRLEIRRTGNLKEGESIIGTRARVKVVKNKLAPPFQEAEFDLLYGVGIHRAGEVLD 251

Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
           LGV+   ++KSG+ FS +G+R+GQGRE +  +LRE+ +  E + + L   A
Sbjct: 252 LGVQLGFIEKSGSHFSLRGERIGQGRERATDWLREHPQALEALATELAGTA 302


>gi|189308777|gb|ACD87090.1| RecA [Vibrio sp. PP-200]
          Length = 273

 Score =  395 bits (1015), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 185/275 (67%), Positives = 232/275 (84%), Gaps = 2/275 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  I
Sbjct: 1   KGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D+
Sbjct: 59  AAAQRVGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG
Sbjct: 119 MVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR GSIKD D I GN+TR+KVVKNK+A+PFKQ E 
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEIVGNETRIKVVKNKIAAPFKQAET 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            I+YG+G +  GELIDLGVK  +++K+GA +S+ G
Sbjct: 239 QILYGQGFNREGELIDLGVKNKLIEKAGARYSYNG 273


>gi|295315347|gb|ADF97759.1| RecA [Vibrio sp. KTW-12]
          Length = 271

 Score =  395 bits (1015), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 185/272 (68%), Positives = 229/272 (84%), Gaps = 2/272 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   +E +S+GSL LDIALG GG P GRI EIYGPESSGKTTL L  I
Sbjct: 2   KGSIMRLGDNRTM--DVETISTGSLALDIALGAGGLPMGRICEIYGPESSGKTTLTLELI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+
Sbjct: 60  ASAQRQGKTCAFIDAEHALDPIYAQKLGVNIDQLLVSQPDTGEQALEICDALARSGAVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG
Sbjct: 120 IVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ + 
Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQADT 239

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
            I+YG+G +  GELIDLGVK   VDK+GAW++
Sbjct: 240 QILYGQGFNRLGELIDLGVKHKFVDKAGAWYT 271


>gi|1280519|gb|AAA98505.1| RecA protein [Leptospira interrogans]
          Length = 355

 Score =  395 bits (1015), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/329 (60%), Positives = 260/329 (79%), Gaps = 7/329 (2%)

Query: 10  VDKSK--ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           VD SK  A+E A+SQI++ +GKG+IM+LGS  S  + ++V+ SGSL LDIALGIGG+P G
Sbjct: 16  VDDSKKLAIEQAMSQIEKQFGKGSIMKLGSD-SAKQTVQVIPSGSLDLDIALGIGGYPIG 74

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTL L  IA++QK GG  AF+D EHALD  YA+KLGV++  LL+SQP
Sbjct: 75  RIVEIYGPESSGKTTLTLSAIAEAQKRGGVAAFIDGEHALDPSYAKKLGVNIDELLVSQP 134

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GE+ALEI + LVRS A+D+IVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT
Sbjct: 135 DNGEEALEICESLVRSNAIDLIVIDSVAALVPKAEIEGDMGDSHMGLQARLMSQALRKLT 194

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            +I++SK +++FINQ+RMKIGVMFGSPETTTGGNALKFY SVRLDIR++ +  +KD I  
Sbjct: 195 GTIAKSKTVVIFINQIRMKIGVMFGSPETTTGGNALKFYCSVRLDIRKIETTTEKDRICR 254

Query: 248 NQTRVKVVKNK-MASPFKQVEFDIMYGE-GISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           N+    VVKNK    PFK  EFDI++   GIS  G L+DLGVK  I+ K+GAW+S+  ++
Sbjct: 255 NRDESNVVKNKSCPPPFKPAEFDIIFNHAGISREGSLVDLGVKHDIIHKAGAWYSYNTEK 314

Query: 306 LGQGREN-SKIFLR-ENIEIAENIESLLR 332
           +GQG+ + +K +L+ + +++   IE+++R
Sbjct: 315 IGQGKASAAKEYLKNKTLKLTLTIENMVR 343


>gi|227514525|ref|ZP_03944574.1| recombination protein A [Lactobacillus fermentum ATCC 14931]
 gi|227087082|gb|EEI22394.1| recombination protein A [Lactobacillus fermentum ATCC 14931]
          Length = 366

 Score =  395 bits (1014), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 191/359 (53%), Positives = 268/359 (74%), Gaps = 7/359 (1%)

Query: 4   RKEMNIVDKSKA-LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
           ++E  + D+ KA L+ AL +I++ +GKG+IM++G        I  +SSGSL +D ALG+G
Sbjct: 9   KEEHKLADQRKAALDNALRKIEKNFGKGSIMRMGDAADT--KIATISSGSLAIDEALGVG 66

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G+P+GRI+E+YGPESSGKTT+ALH +A+ Q+ GGT A++DAE+ALD  YA  LGV + +L
Sbjct: 67  GYPRGRIIEMYGPESSGKTTVALHAVAEVQRRGGTAAYIDAENALDPQYATALGVQINDL 126

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           L+SQPDTGEQ LEI D L+ SGAVDI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQA
Sbjct: 127 LLSQPDTGEQGLEIADALIASGAVDIVVVDSVAALVPRAEIEGEMGDTHVGLQARLMSQA 186

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           LRKL+  I+++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++R++IRR   +K+ 
Sbjct: 187 LRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRMEIRRGEQLKNG 246

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
             + GN+ ++KVVKNK+A PF++ E DIMYGEGIS  GEL+D+ V+  +V+KSGAW+S+ 
Sbjct: 247 TDVIGNRAKIKVVKNKVAPPFRKAEVDIMYGEGISKTGELLDMAVEKDLVNKSGAWYSYG 306

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ----EPAINTKDDADKD 357
            +R+GQGREN+K +  ++ +    + + +R   G+  D        EP   T ++A  D
Sbjct: 307 NERIGQGRENAKQWFADHEDAMNELMNKVRVAYGMEPDEAPAAKEGEPQQETIEEASSD 365


>gi|329767009|ref|ZP_08258537.1| RecA protein [Gemella haemolysans M341]
 gi|328837734|gb|EGF87359.1| RecA protein [Gemella haemolysans M341]
          Length = 379

 Score =  395 bits (1014), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/355 (56%), Positives = 259/355 (72%), Gaps = 12/355 (3%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  A+  A+  I++ YGKGAIM + S+  I   +E VSSGSL +D ALGIGG+PKGRIVE
Sbjct: 21  RQAAINEAIKVIEKEYGKGAIMDISSENPI--KVEAVSSGSLAIDSALGIGGYPKGRIVE 78

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK--NLLISQPDT 129
           +YGPESSGKTT+ALH IA+ QKTGG  AF+DAE+ALD  YA+ LGVD       +SQPD+
Sbjct: 79  VYGPESSGKTTIALHAIAEVQKTGGIAAFIDAENALDIEYAKALGVDFTPGKFFLSQPDS 138

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQAL+I + L+ SGA+DIIVIDSVAAL P+AEI+G MG +  G+QARLMSQALRKLT  
Sbjct: 139 GEQALDIAEKLILSGAIDIIVIDSVAALVPKAEIDGVMGANHIGLQARLMSQALRKLTGQ 198

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-ITGN 248
           I+++  I +FINQ+R K+GVMFGSPE TTGG ALKFYS+VR+D+R+  +IK  DS I GN
Sbjct: 199 INKANTIALFINQLREKVGVMFGSPEVTTGGRALKFYSTVRIDVRKGEAIKGADSEILGN 258

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++K+VKNK+A PFK  E DIM+GEGIS  GE +D  V   I++KSG+WFS+ G+RLGQ
Sbjct: 259 RTKIKIVKNKVAPPFKIAEVDIMFGEGISKIGETLDFAVDLDIINKSGSWFSYNGERLGQ 318

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           GREN K    EN       E L  +  GLV + ++ +    T    + D+ D+++
Sbjct: 319 GRENVKKVFEEN-------EELYNEIYGLVREEMMNKTGKKTDSIVENDENDDID 366


>gi|282882064|ref|ZP_06290705.1| RecA protein [Peptoniphilus lacrimalis 315-B]
 gi|281298094|gb|EFA90549.1| RecA protein [Peptoniphilus lacrimalis 315-B]
          Length = 343

 Score =  395 bits (1014), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/323 (60%), Positives = 260/323 (80%), Gaps = 2/323 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           ++K +AL+  L+ I++ YG+G+IM+LG    +   I+ + +G+L LDIALGIGG PKGRI
Sbjct: 5   LEKKEALDKVLATIEKQYGEGSIMKLGQDAKL--NIDSIPTGALALDIALGIGGIPKGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A+SQK GG  AF+DAEHALD  YA+KLGVD++NL+ISQPDT
Sbjct: 63  IEIYGPESSGKTTIALHIVAESQKLGGNAAFIDAEHALDPGYAKKLGVDVENLIISQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEIT+ LVRS AVDI+VIDSVAAL P+ EI+G+MG++  G+QARLMSQALRKLT +
Sbjct: 123 GEQALEITEALVRSNAVDIVVIDSVAALVPKTEIDGEMGQATIGLQARLMSQALRKLTGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I++SK  ++FINQ+R K+GV++G+PETTTGG ALKFYS++RLD+RR+  IK  DS  G++
Sbjct: 183 INKSKAAVIFINQLREKVGVIYGNPETTTGGRALKFYSTIRLDVRRIEIIKKGDSPIGSR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            RVKVVKNK+A PFK+ E DIMYG GIS  G ++D+     IV K+G+W+S+  ++LGQG
Sbjct: 243 VRVKVVKNKVAPPFKEAEVDIMYGTGISKTGNILDVAADMGIVKKAGSWYSYNDEKLGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLR 332
           RE SK FL  N+ + + IE+ +R
Sbjct: 303 REKSKDFLDSNLNLLKEIENKVR 325


>gi|189308775|gb|ACD87089.1| RecA [Vibrio sp. PP-203]
          Length = 275

 Score =  395 bits (1014), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 185/275 (67%), Positives = 232/275 (84%), Gaps = 2/275 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  I
Sbjct: 3   KGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELI 60

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D+
Sbjct: 61  AAAQRVGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDV 120

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG
Sbjct: 121 MVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIG 180

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR GSIKD D I GN+TR+KVVKNK+A+PFKQ E 
Sbjct: 181 VMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEIVGNETRIKVVKNKIAAPFKQAET 240

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            I+YG+G +  GELIDLGVK  +++K+GA +S+ G
Sbjct: 241 QILYGQGFNREGELIDLGVKNKLIEKAGARYSYNG 275


>gi|217077528|ref|YP_002335246.1| recombinase A [Thermosipho africanus TCF52B]
 gi|217037383|gb|ACJ75905.1| protein RecA [Thermosipho africanus TCF52B]
          Length = 353

 Score =  395 bits (1014), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/350 (55%), Positives = 261/350 (74%), Gaps = 9/350 (2%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K + L+ A+ +I++ YGKG+IM LG + SI + IE + SGS+ +DIA G+GG+P+GRI+E
Sbjct: 8   KREVLKKAIGKIEKTYGKGSIMFLGEESSI-QNIETIPSGSVAIDIASGVGGYPRGRIIE 66

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH IA +QK GG  AF+DAEHALD +YA+ LGV++ +LLI+QPD GE
Sbjct: 67  IYGPESSGKTTIALHAIASAQKNGGVAAFIDAEHALDPVYAQNLGVNVNDLLIAQPDYGE 126

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRS AVDI+VIDSVAAL PRAEIEG MG+   G+QARLMSQALRKL  +I+
Sbjct: 127 QALEIVDELVRSNAVDIVVIDSVAALVPRAEIEGSMGDVQVGLQARLMSQALRKLAGNIN 186

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +SK +++FINQ RMKIGVM+G+PETTTGG ALKFY+++RL++R +G I +     GNQ R
Sbjct: 187 KSKTVVIFINQTRMKIGVMYGNPETTTGGVALKFYATMRLEVRGIGKITEGSESVGNQVR 246

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF---KG--QRL 306
           VK VKNK+A PFK+   DI+YG+GI    EL ++ V   ++ + G+WFS+   KG    L
Sbjct: 247 VKFVKNKVAPPFKEAIVDIIYGKGIVRENELFNIAVDEQLITRRGSWFSYVDLKGVEHSL 306

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           GQG+ NS  +L E+ E+ + IE ++R+  GL+      E   + K ++DK
Sbjct: 307 GQGKNNSIAYLLEHPELLDEIEGIIREKHGLIKKG---EEKADEKKESDK 353


>gi|52630831|gb|AAU84883.1| RecA [Burkholderia ubonensis]
          Length = 249

 Score =  395 bits (1014), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/249 (75%), Positives = 221/249 (88%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AE
Sbjct: 61  AEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           IEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNA
Sbjct: 121 IEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNA 180

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+
Sbjct: 181 LKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEI 240

Query: 283 IDLGVKASI 291
           IDLGV+A I
Sbjct: 241 IDLGVQAKI 249


>gi|148879007|emb|CAM07019.1| RecA protein [Mycobacterium llatzerense]
          Length = 270

 Score =  394 bits (1013), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 182/269 (67%), Positives = 228/269 (84%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KL
Sbjct: 1   DVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD  +LL+SQPDTGEQALEI DMLVRSGA+ ++VIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDSLLVSQPDTGEQALEIADMLVRSGAISLLVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           ARLMSQALRK+T +++ S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR
Sbjct: 121 ARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRR 180

Query: 236 VGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           + ++KD     GN+TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KS
Sbjct: 181 IETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEQGFIRKS 240

Query: 296 GAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           G+WF+++G++LGQG+EN++ FL EN+++A
Sbjct: 241 GSWFTYEGEQLGQGKENARNFLLENVDVA 269


>gi|306819658|ref|ZP_07453321.1| recombination protein A [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304552303|gb|EFM40231.1| recombination protein A [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 373

 Score =  394 bits (1013), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/327 (61%), Positives = 255/327 (77%), Gaps = 4/327 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K   +VDK KAL+ ALS IQ+ +GKG+IM LG    +   +E + +GS+GLD A+GIGG 
Sbjct: 9   KREEVVDKKKALDKALSDIQKEFGKGSIMLLGENTKM--NVEAIPTGSVGLDKAIGIGGV 66

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRIVEIYG ESSGKTT+ALH IA++QK GGT AF+DAEHALD IYAR LGVD+ +LLI
Sbjct: 67  PKGRIVEIYGAESSGKTTIALHCIAEAQKLGGTAAFIDAEHALDPIYARALGVDIDSLLI 126

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQAL+ITD LVRSGA+DIIV+DSVAAL P+ EIEG+MG++  G+QARLMSQALR
Sbjct: 127 SQPDTGEQALDITDTLVRSGALDIIVVDSVAALVPKTEIEGEMGDTFIGLQARLMSQALR 186

Query: 185 KLTSSISRSKCILVFINQMRMKI--GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           KLT  I+ SK +++FINQ+R  I  G   G  ETT GG ALKFY++VRLD+RR G +K  
Sbjct: 187 KLTGHINWSKTVVIFINQLRSTISTGYAQGPTETTAGGRALKFYATVRLDVRRTGQLKQG 246

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           D++ GN+T+VKVVKNK+A PFKQ EFDIMYG+GIS  GEL+D+ +   I+ ++G+WFS  
Sbjct: 247 DNVVGNRTKVKVVKNKVAPPFKQCEFDIMYGKGISKVGELLDIAIATDIIKQAGSWFSMG 306

Query: 303 GQRLGQGRENSKIFLRENIEIAENIES 329
            +RLGQGREN +  + E+  + E I +
Sbjct: 307 EKRLGQGRENIRKLIEEDDNLFEEIRA 333


>gi|159146598|gb|ABW90743.1| recombinase A [Vibrio vulnificus]
 gi|159146600|gb|ABW90744.1| recombinase A [Vibrio vulnificus]
 gi|159146602|gb|ABW90745.1| recombinase A [Vibrio vulnificus]
 gi|159146608|gb|ABW90748.1| recombinase A [Vibrio vulnificus]
 gi|159146612|gb|ABW90750.1| recombinase A [Vibrio vulnificus]
 gi|159146614|gb|ABW90751.1| recombinase A [Vibrio vulnificus]
 gi|159146624|gb|ABW90756.1| recombinase A [Vibrio vulnificus]
 gi|159146626|gb|ABW90757.1| recombinase A [Vibrio vulnificus]
          Length = 278

 Score =  394 bits (1013), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/280 (66%), Positives = 235/280 (83%), Gaps = 2/280 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GP
Sbjct: 1   LAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDQLLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 ICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           KNK+A+PFK+    IMYG+G +  GELIDLGVK  +++KS
Sbjct: 239 KNKIAAPFKEANTQIMYGQGFNREGELIDLGVKCKLIEKS 278


>gi|159894946|gb|ABX09819.1| recombinase A [Vibrio harveyi]
          Length = 278

 Score =  394 bits (1013), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/280 (66%), Positives = 235/280 (83%), Gaps = 2/280 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGP
Sbjct: 1   LAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 ICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           KNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+K+
Sbjct: 239 KNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKA 278


>gi|241890054|ref|ZP_04777352.1| protein RecA [Gemella haemolysans ATCC 10379]
 gi|241863676|gb|EER68060.1| protein RecA [Gemella haemolysans ATCC 10379]
          Length = 379

 Score =  394 bits (1013), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/355 (56%), Positives = 258/355 (72%), Gaps = 12/355 (3%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  A+  A+  I++ YGKGAIM + S+  I   +E VSSGSL +D ALGIGG+PKGRIVE
Sbjct: 21  RQAAINEAIKVIEKEYGKGAIMDISSENPI--KVEAVSSGSLAIDSALGIGGYPKGRIVE 78

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK--NLLISQPDT 129
           +YGPESSGKTT+ALH IA+ QKTGG  AF+DAE+ALD  YA+ LGVD       +SQPD+
Sbjct: 79  VYGPESSGKTTIALHAIAEVQKTGGIAAFIDAENALDIEYAKALGVDFTPGKFFLSQPDS 138

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQAL+I + L+ SGA+DIIVIDSVAAL P+AEI+G MG +  G+QARLMSQALRKLT  
Sbjct: 139 GEQALDIAEKLILSGAIDIIVIDSVAALVPKAEIDGVMGANHIGLQARLMSQALRKLTGQ 198

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-ITGN 248
           I+++  I +FINQ+R K+GVMFGSPE TTGG ALKFYS+VR+D+R+  +IK  DS I GN
Sbjct: 199 INKANTIALFINQLREKVGVMFGSPEVTTGGRALKFYSTVRIDVRKGEAIKGADSEILGN 258

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++K+VKNK+A PFK  E DIM+GEGIS  GE +D  V   I++KSG+WFS+ G+RLGQ
Sbjct: 259 RTKIKIVKNKVAPPFKVAEVDIMFGEGISKIGETLDFAVDLDIINKSGSWFSYNGERLGQ 318

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           GREN K    EN       E L  +  GLV D ++ +         +++  DN++
Sbjct: 319 GRENVKKVFEEN-------EELYNEIYGLVRDEIMSKTGKKNNSVDEEESNDNID 366


>gi|239617936|ref|YP_002941258.1| recA protein [Kosmotoga olearia TBF 19.5.1]
 gi|239506767|gb|ACR80254.1| recA protein [Kosmotoga olearia TBF 19.5.1]
          Length = 355

 Score =  394 bits (1013), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/354 (56%), Positives = 266/354 (75%), Gaps = 11/354 (3%)

Query: 11  DKSK--ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           DK+K  ALE A+ +I++ +GKGA+M LG Q +    I+VV +GSL LDIALG+GG+P+GR
Sbjct: 6   DKAKKIALEKAIKEIEKQFGKGAVMLLGDQEA-RANIDVVPTGSLSLDIALGVGGYPRGR 64

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYG ESSGKTT+ALH IA+ QK GGT AFVDAEHALD  YAR LGVD+ NLLISQPD
Sbjct: 65  VVEIYGSESSGKTTVALHAIAEVQKMGGTAAFVDAEHALDISYARALGVDVDNLLISQPD 124

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GEQALEI + LVRS AVD++V+DSVAAL PRAEIEG MG+   G+QARLMSQALRK++ 
Sbjct: 125 YGEQALEIVESLVRSNAVDLVVVDSVAALVPRAEIEGSMGDMQVGLQARLMSQALRKISG 184

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           ++S+S+ I++FINQ RMKIGV++G+PETTTGG ALKFYSS+RL+IRR  +I++ +++ GN
Sbjct: 185 TVSKSRSIVMFINQTRMKIGVVYGNPETTTGGVALKFYSSIRLEIRRGAAIREGNNVIGN 244

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ---- 304
           +T +KVVKNK+A PFK  + D++YG GI    EL +L VK   +++ GAW+++  Q    
Sbjct: 245 ETYIKVVKNKVAPPFKDAKVDLIYGRGIVRENELFELAVKEGFIERKGAWYTYISQDGKE 304

Query: 305 -RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
             LGQG+ N   FL  N EI   IE+ +R+   L     ++E +   K++ +K+
Sbjct: 305 ISLGQGKSNGINFLMANSEILLEIENRIREKYSL---PKVEEKSEKVKENGEKE 355


>gi|148878997|emb|CAM07014.1| RecA protein [Mycobacterium sp. MG7]
          Length = 281

 Score =  394 bits (1013), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 183/272 (67%), Positives = 229/272 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAE
Sbjct: 10  ISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 69

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA+KLGVD  +LL+SQPDTGEQALEI DMLVRSGA+ ++VIDSVAAL PRAEIE
Sbjct: 70  HALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAISLLVIDSVAALVPRAEIE 129

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFGSPETTTGG ALK
Sbjct: 130 GEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALK 189

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FYSSVRLD+RR+ ++KD     GN+TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID
Sbjct: 190 FYSSVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGKGISKEGSLID 249

Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316
           +GV+   + KSG+WF+++G++LGQG+EN++ F
Sbjct: 250 MGVEQGFIRKSGSWFTYEGEQLGQGKENARNF 281


>gi|322377170|ref|ZP_08051662.1| protein RecA [Streptococcus sp. M334]
 gi|321281883|gb|EFX58891.1| protein RecA [Streptococcus sp. M334]
          Length = 388

 Score =  394 bits (1013), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/358 (55%), Positives = 268/358 (74%), Gaps = 7/358 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  EREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KD+  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIKGTGDQKDTNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAW+S+K +++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT-KDDADKDDTDNVE 363
           GQG EN+K +L ++ E+ + I+  +R   GL+         + T KD+A + D+ N E
Sbjct: 316 GQGSENAKKYLTDHPEVFDEIDHQVRVQFGLIDGEEASVEGVETKKDEAVQADSVNEE 373


>gi|148879019|emb|CAM07025.1| RecA protein [Mycobacterium sp. MHSD3]
          Length = 276

 Score =  394 bits (1013), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 183/270 (67%), Positives = 228/270 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAE
Sbjct: 7   ISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 66

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA+KLGVD  +LL+SQPDTGEQALEI DMLVRSGA+ +IVIDSVAAL PRAEIE
Sbjct: 67  HALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAISLIVIDSVAALVPRAEIE 126

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFGSPETTTGG ALK
Sbjct: 127 GEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALK 186

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FYSSVRLD+RR+ ++KD     GN+TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID
Sbjct: 187 FYSSVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGKGISKEGSLID 246

Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           +GV+   + KSG+WF+++G++LGQG+EN++
Sbjct: 247 MGVEQGFIRKSGSWFTYEGEQLGQGKENAR 276


>gi|220907090|ref|YP_002482401.1| recombinase A [Cyanothece sp. PCC 7425]
 gi|254790430|sp|B8HR52|RECA_CYAP4 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|219863701|gb|ACL44040.1| recA protein [Cyanothece sp. PCC 7425]
          Length = 357

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/323 (60%), Positives = 255/323 (78%), Gaps = 3/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL   ++QI+R +GKG+IM+LG    +   +E V +G+L LD+ALG GG P+GR+V
Sbjct: 10  EKQKALNLVMTQIERSFGKGSIMRLGDATRM--KVETVPTGALPLDLALG-GGLPRGRVV 66

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH IA  Q+TGG  AFVDAEHALD  YA  LGVD++NLLISQPDTG
Sbjct: 67  EIYGPESSGKTTLALHAIAAVQQTGGIAAFVDAEHALDPAYAAVLGVDIQNLLISQPDTG 126

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D LVRS AVD++VIDSVAAL P+AEIEGDMG++  G+QARLMSQALRK+T +I
Sbjct: 127 ETALEIVDQLVRSTAVDVVVIDSVAALVPKAEIEGDMGDAHVGLQARLMSQALRKITGNI 186

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++ CI++F+NQ+R KIGV +G+PETTTGGNALKFY+SVRLDIRRV ++K      GN+ 
Sbjct: 187 GKTGCIVIFLNQLRQKIGVTYGNPETTTGGNALKFYASVRLDIRRVQTLKKGTEEFGNRV 246

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV KNK+A PF+  EFDI++G+GIS  G ++D+  +  +V++ GAW+S+ G+ L QGR
Sbjct: 247 KVKVAKNKVAPPFRVAEFDIIFGKGISRLGCILDMAEETGVVNRKGAWYSYNGENLAQGR 306

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           +N+  ++ EN E A NIE L+RQ
Sbjct: 307 DNTIKYMEENPEFARNIEQLVRQ 329


>gi|163790802|ref|ZP_02185228.1| recombinase A [Carnobacterium sp. AT7]
 gi|159873982|gb|EDP68060.1| recombinase A [Carnobacterium sp. AT7]
          Length = 308

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/314 (60%), Positives = 241/314 (76%), Gaps = 7/314 (2%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SGSL LD+ALG+GGFP+GRI+E+YGPESSGKTT+ALH +A+ QK GG  AF+DAE+ALD 
Sbjct: 1   SGSLALDVALGVGGFPRGRIIEVYGPESSGKTTVALHAVAEVQKQGGIAAFIDAENALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
            YA  LGVD+  LL+SQPDTGEQ LEI D LV SGAVDI+VIDSVAAL PRAEIEG+MG+
Sbjct: 61  KYAAALGVDIDELLLSQPDTGEQGLEIADALVSSGAVDIVVIDSVAALVPRAEIEGEMGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           S  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++
Sbjct: 121 SHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGVMFGNPEITPGGRALKFYATI 180

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
           RL++RR   IK    I GN+T++KVVKNK+A PF+  E DIMYGEGIS  GEL+D+G   
Sbjct: 181 RLEVRRAEQIKQGTEIMGNRTKIKVVKNKVAPPFRIAEVDIMYGEGISQVGELVDMGSDK 240

Query: 290 SIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
            I+DKSGAW+S+ G+R+GQGREN K F +EN E+   +E  +R   G        EP   
Sbjct: 241 DIIDKSGAWYSYNGERIGQGRENVKKFFKENPELRAEVEKKVRAAYG------FGEPGAE 294

Query: 350 TKDDADKDDTDNVE 363
            + + +K +TD +E
Sbjct: 295 DQ-ETEKPETDLLE 307


>gi|52630815|gb|AAU84875.1| RecA [Burkholderia sp. R13392]
          Length = 249

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/249 (74%), Positives = 222/249 (89%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAE
Sbjct: 1   IQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIE
Sbjct: 61  HALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 121 GEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALK 180

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+ID
Sbjct: 181 FYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIID 240

Query: 285 LGVKASIVD 293
           LGV+A IVD
Sbjct: 241 LGVQAKIVD 249


>gi|223635925|emb|CAQ03764.1| recombination-repair protein [Enterovibrio coralii]
 gi|223635927|emb|CAQ03765.1| recombination-repair protein [Enterovibrio coralii]
 gi|223635929|emb|CAQ03766.1| recombination-repair protein [Enterovibrio coralii]
 gi|223635931|emb|CAQ03767.1| recombination-repair protein [Enterovibrio coralii]
 gi|223635933|emb|CAQ03768.1| recombination-repair protein [Enterovibrio coralii]
 gi|223635935|emb|CAQ03769.1| recombination-repair protein [Enterovibrio coralii]
 gi|223635937|emb|CAQ03770.1| recombination-repair protein [Enterovibrio coralii]
 gi|223635939|emb|CAQ03771.1| recombination-repair protein [Enterovibrio coralii]
 gi|223635941|emb|CAQ03772.1| recombination-repair protein [Enterovibrio coralii]
          Length = 256

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/258 (72%), Positives = 223/258 (86%), Gaps = 2/258 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   IE VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRLGDDRTM--DIETVSTGSLSLDIALGAGGLPYGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK G TCAF+DAEHALD +YARKL VD+ NLL+SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AEAQKQGKTCAFIDAEHALDPVYARKLHVDIDNLLVSQPDTGEQALEIADALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I+IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT++I  S  +++FINQ+RMKIG
Sbjct: 119 IIIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D + GN TRVKVVKNK+A+PFKQ EF
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEVVGNDTRVKVVKNKIAAPFKQAEF 238

Query: 269 DIMYGEGISFFGELIDLG 286
            IMYGEGI+ +GELIDLG
Sbjct: 239 QIMYGEGINLYGELIDLG 256


>gi|269121570|ref|YP_003309747.1| recA protein [Sebaldella termitidis ATCC 33386]
 gi|268615448|gb|ACZ09816.1| recA protein [Sebaldella termitidis ATCC 33386]
          Length = 375

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/322 (59%), Positives = 252/322 (78%), Gaps = 5/322 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK K ++ A+ QIQ+ YG+G+IM+LG    +   I+ +S+GSL LDIALG+GG P+GRI+
Sbjct: 13  DKEKIIDLAMKQIQKEYGEGSIMKLGENQKM--NIKSISTGSLNLDIALGVGGVPRGRII 70

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYG ESSGKTTLA+H IA++QK GG   F+DAEHALD +YA+ LGV++  LLISQPDTG
Sbjct: 71  EIYGAESSGKTTLAIHIIAEAQKLGGVAGFIDAEHALDPVYAKALGVNIDELLISQPDTG 130

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IVIDSVAAL P+AEIEG+MG+   G+QARLMS+ALRKLT SI
Sbjct: 131 EQALEIADMLVRSGALDVIVIDSVAALVPKAEIEGEMGDQQMGLQARLMSKALRKLTGSI 190

Query: 191 SRSKCILVFINQMRMKIG---VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           S+S  +++FINQ+R KIG    + G   TT+GG ALKF+S+VR++++R+GSIK  D + G
Sbjct: 191 SKSSTVMIFINQIREKIGGFSFVPGVQTTTSGGRALKFFSTVRMEVKRIGSIKQGDEVIG 250

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+T VKV KNK++ PFK+  F+IMYG+GIS  GE++D+ +   IV KSGAWFS+  +RLG
Sbjct: 251 NETLVKVTKNKVSPPFKEARFNIMYGKGISKIGEILDIAIDNGIVAKSGAWFSYGDERLG 310

Query: 308 QGRENSKIFLRENIEIAENIES 329
           QGR N +  L EN E+   IE+
Sbjct: 311 QGRVNVENSLAENTELLGRIET 332


>gi|269784294|emb|CBH50792.1| recA protein [Vibrio sp. Cmj 13.4]
          Length = 269

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 185/271 (68%), Positives = 228/271 (84%), Gaps = 2/271 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +Q
Sbjct: 1   MRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VID
Sbjct: 59  KVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FIN +RMKIGVMFG
Sbjct: 119 SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINHIRMKIGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I+Y
Sbjct: 179 NPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILY 238

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
           G+G +  GELIDLGVK  +V+K+GAW+S+ G
Sbjct: 239 GKGFNREGELIDLGVKNKLVEKAGAWYSYNG 269


>gi|148879009|emb|CAM07020.1| RecA protein [Mycobacterium llatzerense]
          Length = 282

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 182/273 (66%), Positives = 228/273 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAE
Sbjct: 10  ISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 69

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA+KLGVD   LL+SQPDTGEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIE
Sbjct: 70  HALDPDYAQKLGVDTDALLVSQPDTGEQALEIADMLVRSGAIDILVIDSVAALVPRAEIE 129

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFGSPETTTGG ALK
Sbjct: 130 GEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALK 189

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVR+D+RR+ ++KD     GN+TR K+VKNK+A PFKQ EFDI+YG+GIS  G LID
Sbjct: 190 FYASVRIDVRRIETLKDGTDAVGNRTRAKIVKNKVAPPFKQAEFDILYGKGISKEGSLID 249

Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317
           +GV+   + KSG+WF++ G++LGQG+EN++ +L
Sbjct: 250 MGVEHGFIRKSGSWFTYDGEQLGQGKENARNYL 282


>gi|238828571|gb|ACR61179.1| RecA [Vibrionaceae bacterium AVA1]
          Length = 264

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/265 (70%), Positives = 227/265 (85%), Gaps = 2/265 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   IE VS+GSL LDIALG+GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 2   KGSIMRLGDDRTM--DIETVSTGSLSLDIALGVGGLPYGRIVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK G TCAF+DAEHALD +YARKL VD+ NLL+SQPDTGEQALEI D L RSGAVD+
Sbjct: 60  AEAQKQGKTCAFIDAEHALDPVYARKLNVDIDNLLVSQPDTGEQALEIADALTRSGAVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT +I  S  +++FINQ+RMKIG
Sbjct: 120 IIVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNIKNSNTLMIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TRVKVVKNK+A+PFKQ EF
Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRVKVVKNKVAAPFKQAEF 239

Query: 269 DIMYGEGISFFGELIDLGVKASIVD 293
            I+YG+GI+  GEL+DLGVK  +V+
Sbjct: 240 QILYGQGINLLGELVDLGVKDKLVE 264


>gi|317495221|ref|ZP_07953591.1| recA bacterial DNA recombination protein [Gemella moribillum M424]
 gi|316914643|gb|EFV36119.1| recA bacterial DNA recombination protein [Gemella moribillum M424]
          Length = 377

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/329 (59%), Positives = 250/329 (75%), Gaps = 5/329 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +I  +  A+  A+  I++ YGKGAIM + S+  I   +E VSSGSL +D ALGIGG+PKG
Sbjct: 17  DIKARQAAINEAIKVIEKEYGKGAIMDISSENPI--KVEAVSSGSLAIDSALGIGGYPKG 74

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK--NLLIS 125
           RIVE+YGPESSGKTT+ALH IA+ QKTGG  AF+DAE+ALD  YA+ LGVD       +S
Sbjct: 75  RIVEVYGPESSGKTTIALHAIAEVQKTGGIAAFIDAENALDIEYAKALGVDFTPGKFFLS 134

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD+GEQAL+I + L+ SGA+DIIVIDSVAAL P+AEI+G MG +  G+QARLMSQALRK
Sbjct: 135 QPDSGEQALDIAEKLILSGAIDIIVIDSVAALVPKAEIDGVMGANHIGLQARLMSQALRK 194

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS- 244
           LT  I+++  I +FINQ+R K+GVMFGSPE TTGG ALKFYS+VR+D+R+  +IK  DS 
Sbjct: 195 LTGQINKANTIALFINQLREKVGVMFGSPEVTTGGRALKFYSTVRIDVRKGEAIKGADSE 254

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           I GN+T++K+VKNK+A PFK  E DIM+GEGIS  GE +D  V   I++KSG+WFS+ G+
Sbjct: 255 ILGNRTKIKIVKNKVAPPFKIAEVDIMFGEGISKIGETLDFAVDLDIINKSGSWFSYNGE 314

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQ 333
           RLGQGREN K    EN E+   I  L+R+
Sbjct: 315 RLGQGRENIKKVFEENEELYNEIYHLVRE 343


>gi|253583663|ref|ZP_04860861.1| recombination protein RecA [Fusobacterium varium ATCC 27725]
 gi|251834235|gb|EES62798.1| recombination protein RecA [Fusobacterium varium ATCC 27725]
          Length = 373

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/318 (60%), Positives = 249/318 (78%), Gaps = 3/318 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+ A+ QI + +G+G+IM+LG+  S+   +EV+S+GSL L+IALG+GG P+GRI+E
Sbjct: 11  KEKALDLAIKQISKEFGEGSIMKLGNNLSM--NVEVISTGSLNLNIALGVGGVPRGRIIE 68

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YG ESSGKTT+ALH +A++QK GG  AF+DAEHALD +YAR LGVD+  LLISQPD GE
Sbjct: 69  VYGAESSGKTTIALHIVAEAQKAGGIAAFIDAEHALDPVYARALGVDVDELLISQPDYGE 128

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DMLVRS AVDIIV+DSVAAL P+ EI+G+MG+   G+QARLMS+ALRKLT++++
Sbjct: 129 QALEIADMLVRSNAVDIIVVDSVAALVPKVEIDGEMGDQQMGLQARLMSKALRKLTATLN 188

Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +SK  +VFINQ+R KIG   FG   TTTGG ALKFYSSVRL+++R+GS+K  D + GN+T
Sbjct: 189 KSKTTMVFINQIRDKIGGFGFGPQTTTTGGKALKFYSSVRLEVKRIGSVKQGDEVIGNET 248

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
            VKV KNK+A PFK+  F IMYG+GI+  GE++++ +   IV KSGAWFSF   RLGQG+
Sbjct: 249 VVKVTKNKVAPPFKEAAFQIMYGKGITRVGEIMEIALNNDIVSKSGAWFSFGDIRLGQGK 308

Query: 311 ENSKIFLRENIEIAENIE 328
           EN K  L    E+   IE
Sbjct: 309 ENVKARLETEPELFGQIE 326


>gi|269784290|emb|CBH50790.1| recA protein [Vibrio sp. C 14.7]
          Length = 270

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 185/272 (68%), Positives = 229/272 (84%), Gaps = 2/272 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +Q
Sbjct: 1   MRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VID
Sbjct: 59  KVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG
Sbjct: 119 SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I+Y
Sbjct: 179 NPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILY 238

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           G+G +  GELIDL VK  +V+K+GAW+S+ G+
Sbjct: 239 GKGFNREGELIDLSVKNKLVEKAGAWYSYNGE 270


>gi|237736319|ref|ZP_04566800.1| RecA protein [Fusobacterium mortiferum ATCC 9817]
 gi|229421667|gb|EEO36714.1| RecA protein [Fusobacterium mortiferum ATCC 9817]
          Length = 359

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/327 (59%), Positives = 254/327 (77%), Gaps = 5/327 (1%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           + E+N  D+ KALE A+ QI++ +G+G+IM+LGS  S+   +E +S+GS+ LD+ALG GG
Sbjct: 5   KDEVN--DREKALEMAMKQIKKDFGEGSIMKLGSNQSM--AVETISTGSINLDLALGQGG 60

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P+GRIVEIYG ESSGKTT+ALH  A++QK GG  AF+DAEHALD +YA+ LGVD+  LL
Sbjct: 61  VPRGRIVEIYGAESSGKTTIALHIAAEAQKMGGIVAFIDAEHALDPVYAKALGVDVDELL 120

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           ISQPD GEQALEI DMLVRSGAVD++V+DSVAAL P+AEI+G+M +   G+QARLMS+AL
Sbjct: 121 ISQPDYGEQALEIADMLVRSGAVDLVVVDSVAALVPKAEIDGEMSDQQMGLQARLMSKAL 180

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           RKLT+++++SK  ++FINQ+R KIG   FG   TTTGG ALKFY+SVR++++RVGS+K  
Sbjct: 181 RKLTATLNKSKTTMIFINQIRDKIGGFGFGPQTTTTGGKALKFYASVRMEVKRVGSVKQG 240

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           D   GN+T VK+ KNK+A PFK+  F IMYG+GIS  GE++D+ ++  IV KSGAWFSF 
Sbjct: 241 DEAIGNETVVKITKNKIAPPFKEAAFQIMYGKGISRVGEILDMAIEYDIVAKSGAWFSFG 300

Query: 303 GQRLGQGRENSKIFLRENIEIAENIES 329
             RLGQG+EN K  L    E+   IE+
Sbjct: 301 DIRLGQGKENVKARLESEPELLAAIEA 327


>gi|317968811|ref|ZP_07970201.1| recombinase A [Synechococcus sp. CB0205]
          Length = 370

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/332 (58%), Positives = 251/332 (75%), Gaps = 3/332 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL   L+QI+R +GKG+IM+LG    +   IE   +G+L LD+ALG GG+PKGR+V
Sbjct: 14  ERDKALGLVLNQIERNFGKGSIMRLGDASRMR--IETTPTGALTLDLALG-GGYPKGRVV 70

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL LH IA+ Q+ GG  AFVDAEHALD +YA  LGVD++NLL+SQPDTG
Sbjct: 71  EVYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAAALGVDIENLLVSQPDTG 130

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D LVRS AVDI+V+DSVAALTPR+EIEG+MG+   G QARLMSQA+RK+T +I
Sbjct: 131 EMALEIVDQLVRSAAVDIVVVDSVAALTPRSEIEGEMGDLAVGSQARLMSQAMRKITGNI 190

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C ++F+NQ+R KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K      G + 
Sbjct: 191 GKSGCTVIFLNQLRQKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEFGIRA 250

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV KNK+A PF+  EFDI++G GIS  G L+DL  +  +V + GAW+S++G  +GQGR
Sbjct: 251 KVKVAKNKVAPPFRIAEFDILFGRGISTVGCLLDLAEEHGVVVRKGAWYSYEGDNIGQGR 310

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL 342
           +N+  +L +N    E IE  +RQ      DSL
Sbjct: 311 DNTITWLEQNSTEKEAIEVKVRQKLSETTDSL 342


>gi|159894926|gb|ABX09809.1| recombinase A [Vibrio sp. MWB21]
 gi|159894928|gb|ABX09810.1| recombinase A [Vibrio sp. MWB28]
 gi|159894930|gb|ABX09811.1| recombinase A [Vibrio sp. MWB29]
 gi|159894932|gb|ABX09812.1| recombinase A [Vibrio sp. MWB30]
 gi|159894934|gb|ABX09813.1| recombinase A [Vibrio sp. B356]
 gi|159894936|gb|ABX09814.1| recombinase A [Vibrio sp. fram1]
 gi|159894938|gb|ABX09815.1| recombinase A [Vibrio sp. GB-215]
 gi|159894940|gb|ABX09816.1| recombinase A [Vibrio sp. idb.1.4]
 gi|159894942|gb|ABX09817.1| recombinase A [Vibrio sp. SB-84]
 gi|159894944|gb|ABX09818.1| recombinase A [Vibrio sp. seaur.1.1]
          Length = 278

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 184/280 (65%), Positives = 235/280 (83%), Gaps = 2/280 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGP
Sbjct: 1   LAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 ICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           KNK+A+PFK+    IMYG+G +  GEL+DLGVK  +V+K+
Sbjct: 239 KNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKA 278


>gi|52630827|gb|AAU84881.1| RecA [Burkholderia ubonensis]
          Length = 249

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/247 (75%), Positives = 220/247 (89%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAE
Sbjct: 3   IQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIE
Sbjct: 63  HALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 123 GEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALK 182

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+ID
Sbjct: 183 FYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIID 242

Query: 285 LGVKASI 291
           LGV+A I
Sbjct: 243 LGVQAKI 249


>gi|312870471|ref|ZP_07730591.1| RecA protein [Lactobacillus oris PB013-T2-3]
 gi|311094028|gb|EFQ52352.1| RecA protein [Lactobacillus oris PB013-T2-3]
          Length = 358

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 183/309 (59%), Positives = 246/309 (79%), Gaps = 2/309 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL +I++ +GKG+IM++G    +   I  VSSGSL +D ALG+GG+P+GRIVE
Sbjct: 5   RKAALDKALQKIEKNFGKGSIMRMGDAADM--KIATVSSGSLAIDKALGVGGYPRGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH +A+ Q+ GGT A++DAE+ALD  YA  LGVD+ NLL+SQPDTGE
Sbjct: 63  IYGPESSGKTTVALHAVAEVQRQGGTVAYIDAENALDPQYAEALGVDVDNLLLSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           + L I D L+ + A+D++VIDSVAAL P+AEI+GDMG+   G+QARLMSQALRKL+  I+
Sbjct: 123 EGLAIADALIATSAIDLVVIDSVAALVPQAEIDGDMGDHHVGLQARLMSQALRKLSGEIN 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++K I +FINQ+R K+GVMFG+PETTTGG ALKFYS++R++IRR   IK+   + GN+ +
Sbjct: 183 KTKTIAIFINQIREKVGVMFGNPETTTGGRALKFYSTIRMEIRRAEQIKNGTDVIGNKAK 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNK+A PFK+ E DIMYGEGIS  GEL+D+ V   +V KSGAW+S+  +R+GQGRE
Sbjct: 243 VKIVKNKVAPPFKRCEVDIMYGEGISKTGELLDMAVDQDLVKKSGAWYSYGNERIGQGRE 302

Query: 312 NSKIFLREN 320
           N+K +L ++
Sbjct: 303 NAKQWLADH 311


>gi|317062547|ref|ZP_07927032.1| recombinase A [Fusobacterium ulcerans ATCC 49185]
 gi|313688223|gb|EFS25058.1| recombinase A [Fusobacterium ulcerans ATCC 49185]
          Length = 376

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/320 (60%), Positives = 248/320 (77%), Gaps = 3/320 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           V K KAL+ A+ QI + +G G+IM+LG   S+   +EV+S+GSL L++ALG+GG P+GR+
Sbjct: 12  VSKEKALDLAIKQISKEFGDGSIMKLGDNLSMH--VEVISTGSLNLNMALGVGGVPRGRV 69

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +E+YG ESSGKTT+ALH +A++QK GG  AF+DAEHALD +YA+ LGVD+  LLISQPD 
Sbjct: 70  IEVYGAESSGKTTIALHIVAEAQKAGGIAAFIDAEHALDPVYAKALGVDVDELLISQPDY 129

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRS AVDIIV+DSVAAL P+ EI+G+MG+   G+QARLMS+ALRKLT+S
Sbjct: 130 GEQALEIADMLVRSNAVDIIVVDSVAALVPKVEIDGEMGDQQMGLQARLMSKALRKLTAS 189

Query: 190 ISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +++SK  +VFINQ+R KIG   FG   TTTGG ALKFYSSVRL+++R+GS+K  D + GN
Sbjct: 190 LNKSKTTMVFINQIRDKIGGFGFGPQTTTTGGKALKFYSSVRLEVKRIGSVKQGDEVIGN 249

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T VKV KNK+A PFK+  F IMYG GI+  GE++++ +   IV KSGAWFSF   RLGQ
Sbjct: 250 ETVVKVTKNKVAPPFKEASFQIMYGRGITRVGEIMEIALSNDIVAKSGAWFSFGDIRLGQ 309

Query: 309 GRENSKIFLRENIEIAENIE 328
           G+EN K  L    E+ E IE
Sbjct: 310 GKENVKARLEAEPELFEQIE 329


>gi|464599|sp|P33542|RECA_AQUPY RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|349397|gb|AAA67702.1| DNA repair protein [Aquifex pyrophilus]
          Length = 348

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/331 (57%), Positives = 252/331 (76%), Gaps = 2/331 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N+ +K KALE ALS I++ +GKGA+M L +  ++   +E + +GS+ LDIA G+GG PKG
Sbjct: 7   NLSEKMKALEVALSSIEKRFGKGAVMPLKAVETV--EVETIPTGSISLDIATGVGGIPKG 64

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI EI+G ESSGKTTLALH IA++QK GG   F+DAEHALD  YA+KLGVD+ NL ISQP
Sbjct: 65  RITEIFGVESSGKTTLALHVIAEAQKRGGVAVFIDAEHALDPKYAKKLGVDVDNLYISQP 124

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI + L+ SGAVD+IV+DSVAAL P+ E+EG+MGE+  G QARLMSQALRKL 
Sbjct: 125 DYGEQALEIAESLINSGAVDVIVVDSVAALVPKDELEGEMGEAQVGKQARLMSQALRKLK 184

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++ RS   L+FINQ+R KIGVMFG+PETT GG ALKF+S +RL++RR+G +K+     G
Sbjct: 185 GAVHRSNTALIFINQIREKIGVMFGNPETTPGGRALKFFSDMRLEVRRLGDVKEGGEKKG 244

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
            + +V+VVKNK+A PF++ EFD++YGEGI    ++ID      ++ KSG+W+S+  +RLG
Sbjct: 245 YRVKVRVVKNKLAPPFQEAEFDVIYGEGICRICDIIDTAANLGVITKSGSWYSYGEKRLG 304

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLV 338
           QGRE +K +L E+ E+ E IE  +R+ +GLV
Sbjct: 305 QGREQAKKYLLEHPEMLEEIERKVREVSGLV 335


>gi|257468267|ref|ZP_05632363.1| recA protein [Fusobacterium ulcerans ATCC 49185]
          Length = 373

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/320 (60%), Positives = 248/320 (77%), Gaps = 3/320 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           V K KAL+ A+ QI + +G G+IM+LG   S+   +EV+S+GSL L++ALG+GG P+GR+
Sbjct: 9   VSKEKALDLAIKQISKEFGDGSIMKLGDNLSMH--VEVISTGSLNLNMALGVGGVPRGRV 66

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +E+YG ESSGKTT+ALH +A++QK GG  AF+DAEHALD +YA+ LGVD+  LLISQPD 
Sbjct: 67  IEVYGAESSGKTTIALHIVAEAQKAGGIAAFIDAEHALDPVYAKALGVDVDELLISQPDY 126

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRS AVDIIV+DSVAAL P+ EI+G+MG+   G+QARLMS+ALRKLT+S
Sbjct: 127 GEQALEIADMLVRSNAVDIIVVDSVAALVPKVEIDGEMGDQQMGLQARLMSKALRKLTAS 186

Query: 190 ISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +++SK  +VFINQ+R KIG   FG   TTTGG ALKFYSSVRL+++R+GS+K  D + GN
Sbjct: 187 LNKSKTTMVFINQIRDKIGGFGFGPQTTTTGGKALKFYSSVRLEVKRIGSVKQGDEVIGN 246

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T VKV KNK+A PFK+  F IMYG GI+  GE++++ +   IV KSGAWFSF   RLGQ
Sbjct: 247 ETVVKVTKNKVAPPFKEASFQIMYGRGITRVGEIMEIALSNDIVAKSGAWFSFGDIRLGQ 306

Query: 309 GRENSKIFLRENIEIAENIE 328
           G+EN K  L    E+ E IE
Sbjct: 307 GKENVKARLEAEPELFEQIE 326


>gi|284929383|ref|YP_003421905.1| RecA protein [cyanobacterium UCYN-A]
 gi|284809827|gb|ADB95524.1| RecA protein [cyanobacterium UCYN-A]
          Length = 345

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 196/340 (57%), Positives = 253/340 (74%), Gaps = 4/340 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+  L+QI+R +GKGAIM+LG    +   +E VS+G+L LD+ALG GG PKGRI+
Sbjct: 9   DKEKALDLVLNQIERNFGKGAIMRLGDAAKM--KVETVSTGALTLDLALG-GGLPKGRII 65

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG  AFVDAEHALD  YA  LGVD+ NLL++QPDTG
Sbjct: 66  EIYGPESSGKTTLTLHAIAEVQKAGGVAAFVDAEHALDPSYASVLGVDIDNLLVAQPDTG 125

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E  LEI D LVRS AVDIIVIDSVAAL PRAEIEG+MG++  G+QARLMS+ALRK+  ++
Sbjct: 126 ESGLEIVDQLVRSSAVDIIVIDSVAALVPRAEIEGEMGDTQVGLQARLMSKALRKIAGNV 185

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSITGNQ 249
            RS C++VF+NQ+R KIGV +GSPE TTGG ALKFY+SVRLDIRR+ ++K   +   G +
Sbjct: 186 GRSGCLVVFLNQLRQKIGVTYGSPEVTTGGTALKFYASVRLDIRRIQTLKKGTEGEYGIR 245

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKV KNK+A PF+  EFDI++G+GIS  G +IDL  + +++ + GAW+S+ G  + QG
Sbjct: 246 AKVKVAKNKVAPPFRIAEFDIIFGQGISNIGCIIDLAEQTNVISRKGAWYSYNGDNISQG 305

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
           R+N+  +L EN E  + IE  +R+   L +  +   P  N
Sbjct: 306 RDNAVKYLEENSEFTKIIEQQVREKLALESLEINASPENN 345


>gi|325266834|ref|ZP_08133505.1| recombination protein A [Kingella denitrificans ATCC 33394]
 gi|324981575|gb|EGC17216.1| recombination protein A [Kingella denitrificans ATCC 33394]
          Length = 371

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/313 (61%), Positives = 257/313 (82%), Gaps = 4/313 (1%)

Query: 23  IQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           I++ YGKGA++++ GS     EG++V+S+GSL LD+ALG+GG P+GRIVEIYG ESSGKT
Sbjct: 31  IEKNYGKGAVIKMDGSHQE--EGLQVISTGSLTLDLALGVGGLPRGRIVEIYGAESSGKT 88

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L +IAQ QK GGTCAF+DAEHA D +YAR+LGV+++ LL+SQPDTG+QALEI DMLV
Sbjct: 89  TLCLESIAQCQKAGGTCAFIDAEHAFDPVYARQLGVEVEKLLVSQPDTGDQALEICDMLV 148

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD++VIDSVAAL P+AEIEG+MG+S  G+ ARLMSQALRKL   I ++  + VFIN
Sbjct: 149 RSGAVDMVVIDSVAALVPKAEIEGEMGDSHVGLHARLMSQALRKLAGHIKKTNTLAVFIN 208

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK-DSITGNQTRVKVVKNKMA 260
           Q RMKIGV +G+PETTTGGNALKFY+SVRL I     I++K   + G +T+VKVVKNK+A
Sbjct: 209 QTRMKIGVSYGNPETTTGGNALKFYASVRLHISGTTKIENKAGDVLGKETKVKVVKNKVA 268

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
            PF+  EFDIMYGEGIS+ GELID+GV+  ++ KSG+WFS++G ++GQG++N + +L++N
Sbjct: 269 PPFRTAEFDIMYGEGISWEGELIDVGVELDVIQKSGSWFSYEGNKIGQGKDNVRQWLKDN 328

Query: 321 IEIAENIESLLRQ 333
            ++A+ I + +R+
Sbjct: 329 EDVAQEIANKIRE 341


>gi|257126448|ref|YP_003164562.1| recombinase A [Leptotrichia buccalis C-1013-b]
 gi|257050387|gb|ACV39571.1| recA protein [Leptotrichia buccalis C-1013-b]
          Length = 370

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/323 (59%), Positives = 251/323 (77%), Gaps = 5/323 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + +K K L+ AL QIQ+ YG+GA+M+LG    +   I  +S+GSL LDIALGIGG P+GR
Sbjct: 16  LTEKEKMLDLALKQIQKDYGEGAVMKLGENQKM--NIRAISTGSLNLDIALGIGGVPRGR 73

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEIYG ESSGKTTLALH IA++QK GG  AF+DAEHALD +YA+ LGV++  LLISQPD
Sbjct: 74  IVEIYGAESSGKTTLALHIIAEAQKAGGVVAFIDAEHALDPVYAKALGVNIDELLISQPD 133

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI+DMLVRSGA+D+IV+DSVAAL P+AEIEG+MG+   G+QARLMS+ALRKLT 
Sbjct: 134 TGEQALEISDMLVRSGAIDVIVVDSVAALVPKAEIEGEMGDQQMGLQARLMSKALRKLTG 193

Query: 189 SISRSKCILVFINQMRMKIG---VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           +I++S  +++FINQ+R KIG    + G   TT+GG ALKF+S+VR++++RVGS+K  D +
Sbjct: 194 NIAKSDTVMIFINQIREKIGGFSFVPGVQTTTSGGRALKFFSTVRMEVKRVGSVKQGDDV 253

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            G++  VKV KNK+A PFK+ +F+IMYG GIS  GE++D  +   I  K+GAWFS+  +R
Sbjct: 254 IGSEVLVKVTKNKVAPPFKEAKFNIMYGTGISKIGEILDAAINLGIASKAGAWFSYGDER 313

Query: 306 LGQGRENSKIFLRENIEIAENIE 328
           LGQGR N +  L+EN E+   +E
Sbjct: 314 LGQGRVNVERMLKENTELYGRLE 336


>gi|194337546|ref|YP_002019340.1| recA protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194310023|gb|ACF44723.1| recA protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 348

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/322 (61%), Positives = 257/322 (79%), Gaps = 1/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K K L  A+  +++ +GKGAIM+LG   +  + ++ +S+GS+ LD ALG+GG P+GR+ E
Sbjct: 17  KLKQLNLAVEALEKQFGKGAIMRLGDDSAGMK-VQSISTGSMTLDFALGVGGLPRGRVTE 75

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH IA++QK GG  A VDAEHA D  YARKLGVD+  LLISQP++GE
Sbjct: 76  IYGPESSGKTTLALHVIAEAQKEGGIAAIVDAEHAFDPTYARKLGVDINALLISQPESGE 135

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL I + LVRS A+D++V+DSVAAL P+AE+EG+MG+S+ G+QARLMSQALRKLT +IS
Sbjct: 136 QALSIVETLVRSNAIDVVVVDSVAALVPQAELEGEMGDSVMGLQARLMSQALRKLTGAIS 195

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S C+ +FINQ+R KIGV++G+PETTTGG ALKFYSSVRLDIR++  IKD + ITGN+TR
Sbjct: 196 KSSCVCIFINQLRDKIGVVYGNPETTTGGKALKFYSSVRLDIRKIAQIKDGEEITGNRTR 255

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF+  EFDI+YGEGIS  GELIDL V+  +V K+G+WFS+   +LGQGRE
Sbjct: 256 VKVVKNKVAPPFRTAEFDILYGEGISAMGELIDLAVEFGVVKKAGSWFSYGTDKLGQGRE 315

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
             K  LRE+  +   I++ +++
Sbjct: 316 TVKKALREDSALYSKIQAQVKE 337


>gi|290795119|gb|ADD64575.1| RecA recombinase [Vibrio sp. F6]
          Length = 260

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 179/259 (69%), Positives = 224/259 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 2   VETISTGSLALDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQRVGKTCAFIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE
Sbjct: 62  HALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 122 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 181

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GELID
Sbjct: 182 FYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELID 241

Query: 285 LGVKASIVDKSGAWFSFKG 303
           LGVK  +V+K+GAW+S++G
Sbjct: 242 LGVKNKLVEKAGAWYSYQG 260


>gi|227877183|ref|ZP_03995257.1| recombination protein A [Lactobacillus crispatus JV-V01]
 gi|256842737|ref|ZP_05548225.1| RecA protein [Lactobacillus crispatus 125-2-CHN]
 gi|256848953|ref|ZP_05554387.1| recombination protein [Lactobacillus crispatus MV-1A-US]
 gi|262045704|ref|ZP_06018668.1| RecA protein [Lactobacillus crispatus MV-3A-US]
 gi|293380182|ref|ZP_06626264.1| protein RecA [Lactobacillus crispatus 214-1]
 gi|312977739|ref|ZP_07789486.1| protein RecA [Lactobacillus crispatus CTV-05]
 gi|227863237|gb|EEJ70682.1| recombination protein A [Lactobacillus crispatus JV-V01]
 gi|256614157|gb|EEU19358.1| RecA protein [Lactobacillus crispatus 125-2-CHN]
 gi|256714492|gb|EEU29479.1| recombination protein [Lactobacillus crispatus MV-1A-US]
 gi|260573663|gb|EEX30219.1| RecA protein [Lactobacillus crispatus MV-3A-US]
 gi|290923226|gb|EFE00147.1| protein RecA [Lactobacillus crispatus 214-1]
 gi|310895478|gb|EFQ44545.1| protein RecA [Lactobacillus crispatus CTV-05]
          Length = 366

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/353 (53%), Positives = 269/353 (76%), Gaps = 13/353 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K  AL+AAL +I++ +GKGA+M++G +      I  V +GSL LD A+G+GG+P+GRI+
Sbjct: 5   EKQAALDAALKKIEKNFGKGAVMRMGEKADT--QISTVPTGSLALDAAIGVGGYPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQP+TG
Sbjct: 63  EVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 123 EEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGNI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK    + GN+ 
Sbjct: 183 SKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDVLGNRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+     I+DK+G+W+S+K  R+GQGR
Sbjct: 243 KIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKSDRIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           EN+K +L E+ +I ++I+  +RQ  G           I+ K  AD++D + ++
Sbjct: 303 ENAKKYLEEHPDIYQDIQKQVRQAYG-----------IDEKSIADREDPEKIK 344


>gi|228955965|ref|ZP_04117900.1| hypothetical protein bthur0006_52830 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228803709|gb|EEM50393.1| hypothetical protein bthur0006_52830 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 366

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/321 (62%), Positives = 259/321 (80%), Gaps = 6/321 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KALE AL +I++ +GKGA+M+LG +    + I VVSSGS+GLD ALG+GG+PKGRI E
Sbjct: 19  KEKALEEALKKIEKDFGKGAVMKLGERPE--QKISVVSSGSVGLDNALGVGGYPKGRITE 76

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPESSGKTTLALH IA+ QK GGT AF+DAEHALD +YA KLGV++  L +SQP+TGE
Sbjct: 77  IFGPESSGKTTLALHAIAEVQKQGGTAAFIDAEHALDPVYAEKLGVNIDELFVSQPNTGE 136

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           +ALEI + LVRS AV+IIV+DSVAAL P+AEI+GDMG S  G+QARLM QALRK++ ++S
Sbjct: 137 EALEIAEALVRSSAVEIIVVDSVAALVPQAEIDGDMGASHVGLQARLMGQALRKISGAVS 196

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++  I +F+NQ+R K+GV FG+PETT GG ALKFYS+VRL++RR   +K    I GN+T+
Sbjct: 197 KNGVIAIFLNQLREKVGVSFGNPETTPGGRALKFYSTVRLEVRRSEQLKQGSDIVGNKTK 256

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF+ +EFDIMYGEGIS  GEL+D+GV   IV KSG+W+S+K +RLGQGR+
Sbjct: 257 VKVVKNKVAPPFRNLEFDIMYGEGISLEGELVDIGVGLDIVQKSGSWYSYKEERLGQGRD 316

Query: 312 NSKIFLRENIEIAENIESLLR 332
           N+K FL+EN    ENI + +R
Sbjct: 317 NAKQFLKEN----ENIRNSVR 333


>gi|329770496|ref|ZP_08261874.1| RecA protein [Gemella sanguinis M325]
 gi|328836245|gb|EGF85914.1| RecA protein [Gemella sanguinis M325]
          Length = 375

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 196/324 (60%), Positives = 247/324 (76%), Gaps = 5/324 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  A+  A+  I++ YGKGAIM + S+  I   +E VSSGSL +D ALGIGG+PKGRIVE
Sbjct: 21  RQAAINEAIKVIEKEYGKGAIMDISSENPI--KVEAVSSGSLAIDSALGIGGYPKGRIVE 78

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK--NLLISQPDT 129
           +YGPESSGKTT+ALH IA+ QKTGG  AF+DAE+ALD  YA+ LGVD       +SQPD+
Sbjct: 79  VYGPESSGKTTIALHAIAEVQKTGGIAAFIDAENALDIEYAKALGVDFTPGKFFLSQPDS 138

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQAL+I + L+ SGA+DIIVIDSVAAL P+AEI+G MG +  G+QARLMSQALRKLT  
Sbjct: 139 GEQALDIAEKLILSGAIDIIVIDSVAALVPKAEIDGVMGANHIGLQARLMSQALRKLTGQ 198

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-ITGN 248
           I+++  I +FINQ+R K+GVMFGSPE TTGG ALKFYS+VR+D+R+  +IK  DS I GN
Sbjct: 199 INKANTIALFINQLREKVGVMFGSPEVTTGGRALKFYSTVRIDVRKGEAIKGADSEILGN 258

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++K+VKNK+A PFK  E DIM+GEGIS  GE +D  V   I++KSG+WFS+ G+RLGQ
Sbjct: 259 RTKIKIVKNKVAPPFKIAEVDIMFGEGISKIGETLDFAVDLDIINKSGSWFSYNGERLGQ 318

Query: 309 GRENSKIFLRENIEIAENIESLLR 332
           GREN K    EN E+   I  L+R
Sbjct: 319 GRENVKKVFEENEELYNEIYDLVR 342


>gi|159146618|gb|ABW90753.1| recombinase A [Vibrio cholerae]
 gi|159146620|gb|ABW90754.1| recombinase A [Vibrio cholerae]
          Length = 278

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/280 (66%), Positives = 235/280 (83%), Gaps = 2/280 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GP
Sbjct: 1   LAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 ICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           KNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KS
Sbjct: 239 KNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKS 278


>gi|295692537|ref|YP_003601147.1| protein reca [Lactobacillus crispatus ST1]
 gi|295030643|emb|CBL50122.1| Protein recA [Lactobacillus crispatus ST1]
          Length = 366

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/353 (53%), Positives = 269/353 (76%), Gaps = 13/353 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K  AL+AAL +I++ +GKGA+M++G +      I  V +GSL LD A+G+GG+P+GRI+
Sbjct: 5   EKQAALDAALKKIEKNFGKGAVMRMGEKADT--QISTVPTGSLALDAAIGVGGYPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQP+TG
Sbjct: 63  EVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 123 EEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGNI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK    + GN+ 
Sbjct: 183 SKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDVLGNRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+     I+DK+G+W+S+K  R+GQGR
Sbjct: 243 KIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKSDRIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           EN+K +L E+ +I ++I+  +RQ  G           I+ K  AD++D + ++
Sbjct: 303 ENAKKYLEEHPDIYQDIQKQVRQAYG-----------IDEKSIADREDPEKIK 344


>gi|270290981|ref|ZP_06197204.1| RecA protein [Pediococcus acidilactici 7_4]
 gi|304385253|ref|ZP_07367598.1| recombination protein A [Pediococcus acidilactici DSM 20284]
 gi|270280377|gb|EFA26212.1| RecA protein [Pediococcus acidilactici 7_4]
 gi|304328460|gb|EFL95681.1| recombination protein A [Pediococcus acidilactici DSM 20284]
          Length = 351

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/348 (55%), Positives = 271/348 (77%), Gaps = 7/348 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ +AL  AL +I++ +GKG+IM++G   ++   I  + SGSL LD ALG+GG+PKGRIV
Sbjct: 4   ERKEALNKALKKIEKNFGKGSIMRMGD--AVDTQISTIPSGSLALDDALGVGGYPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYATNLGVNIDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ L I D LV SGA+D++VIDSVAAL PRAEI+G+MG++  G+QAR+MSQALRKL+ SI
Sbjct: 122 EEGLAIADALVSSGAIDLVVIDSVAALVPRAEIDGEMGDAHVGLQARMMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+G+MFG+PETT GG ALKFY+++RL++RR   IKD   + GN+ 
Sbjct: 182 NKTKTIALFINQIREKVGIMFGNPETTPGGRALKFYATIRLEVRRAEQIKDGSDVIGNRV 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK+ E DIMYGEGIS  GE+ID+ V+  IV KSG+W+S+  +R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKRAEVDIMYGEGISQTGEMIDMAVEKDIVGKSGSWYSYGEERIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           EN+K ++ ++ ++   + + +R+  G+VAD     PA   K+D+ +DD
Sbjct: 302 ENAKKYMEDHPDVRAEVLAKVREAYGMVAD-----PASEVKEDSKQDD 344


>gi|62185564|ref|YP_220349.1| recombinase A [Chlamydophila abortus S26/3]
 gi|76363323|sp|Q5L4P3|RECA_CHLAB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|62148631|emb|CAH64403.1| recombinase A [Chlamydophila abortus S26/3]
          Length = 349

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/323 (57%), Positives = 254/323 (78%), Gaps = 2/323 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN+ D+ KALEAA++ I++ +G G+IM LG   +  E I  + +G+L LD+ALGIGG PK
Sbjct: 1   MNVPDRKKALEAAIAYIEKQFGSGSIMSLGKHSASHE-ISTIKTGALSLDLALGIGGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEI+GPESSGKTTLA H +A +QK GG  A++DAEHALD  YA  +G ++ +L+ISQ
Sbjct: 60  GRIVEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPSYASLIGANIHDLMISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GE AL I ++L RSGAVD+IVIDSVAAL P++E+EGD+G+   G+QAR+MSQALRKL
Sbjct: 120 PDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGDIGDVHVGLQARMMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI- 245
           T++++RS+   +FINQ+R KIGV FG+PETTTGG ALKFYSS+R+DIRR+G+IK  +S  
Sbjct: 180 TATLARSQTCAIFINQIREKIGVSFGNPETTTGGRALKFYSSIRIDIRRIGAIKGNESFD 239

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+ +VKV KNK+A PFK  EFDI++ EGIS  G ++DL V+ +IV+K G+WF+++ ++
Sbjct: 240 LGNRIKVKVAKNKLAPPFKTAEFDILFNEGISSAGCILDLAVEHNIVEKKGSWFNYQDRK 299

Query: 306 LGQGRENSKIFLRENIEIAENIE 328
           LGQGRE  +  L++N ++ E +E
Sbjct: 300 LGQGREAVREELKKNKKLLEELE 322


>gi|15607092|ref|NP_214474.1| recombinase A [Aquifex aeolicus VF5]
 gi|6225921|sp|O67905|RECA_AQUAE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|2984348|gb|AAC07868.1| recombination protein RecA [Aquifex aeolicus VF5]
          Length = 345

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/335 (56%), Positives = 253/335 (75%), Gaps = 2/335 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N+ +K KALE ALS I++ +GKGA+M L S   +   +E + +GSL LDIA G+GG PKG
Sbjct: 4   NLSEKKKALEVALSNIEKRFGKGAVMPLKSVEKV--QVETIPTGSLALDIATGVGGIPKG 61

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI EI+G ESSGKTTLALH IA++QK GG   F+DAEHALD  YA+KLGVD++NL ISQP
Sbjct: 62  RITEIFGVESSGKTTLALHVIAEAQKRGGVAVFIDAEHALDPKYAKKLGVDVENLYISQP 121

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI + L+ SGAVD+IV+DSVAAL P+ E+EG+MGE+  G QARLMSQALRKL 
Sbjct: 122 DYGEQALEIAESLINSGAVDVIVVDSVAALVPKDELEGEMGEAQVGKQARLMSQALRKLK 181

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++ +S   L+FINQ+R KIGVMFG+PETT GG ALKF+S +RL++RR+G +K+     G
Sbjct: 182 GAVHKSNTALIFINQIREKIGVMFGNPETTPGGRALKFFSDMRLEVRRLGDVKEGGEKKG 241

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
            + +V+VVKNK+A PF++ EFDI+YGEGI    +LI++     I  KSG+W+S+  +RLG
Sbjct: 242 YRVKVRVVKNKLAPPFQEAEFDIIYGEGICKLCDLIEVATNLGIFTKSGSWYSYGDKRLG 301

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSL 342
           QG+E  K +L+E+ E+ + I+  +R+ AGL   ++
Sbjct: 302 QGKEQVKKYLQEHPELIDEIDQKVREAAGLAGSNI 336


>gi|86609411|ref|YP_478173.1| recombinase A [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557953|gb|ABD02910.1| recA protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 358

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/324 (59%), Positives = 255/324 (78%), Gaps = 4/324 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALE  LSQI+R +GKGAIM+LG    +   +E + SG++ LD+ALG GG+PKGRI+
Sbjct: 4   EKRKALEQVLSQIERNFGKGAIMRLGDATQMR--VETIPSGAITLDLALG-GGYPKGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E++GPESSGKT++ALH IA+ QK GGT AFVDAEHALD  YA  LGVD++NLLISQPDTG
Sbjct: 61  EVFGPESSGKTSIALHAIAEVQKQGGTAAFVDAEHALDPTYAAALGVDIQNLLISQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D LVRS AVDI+V+DSVAAL PRAEIEGDMG++  G+QARLMSQALRK+  ++
Sbjct: 121 EAALEIVDQLVRSAAVDIVVVDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKIAGNV 180

Query: 191 SRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           S++  I++F+NQ+R KI G+ +G  ETTTGGNALKFY+SVRLDIRRV ++K      G +
Sbjct: 181 SKTGSIVLFLNQLRSKIGGIGYGPQETTTGGNALKFYASVRLDIRRVQTLKKGAEEYGIR 240

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            RVKVVKNK+A PF++ EFDI++G+GIS  G +IDL  +  I+ + G+W+S+K + + QG
Sbjct: 241 ARVKVVKNKVAPPFRRAEFDIIFGQGISNIGCIIDLADEMGILKRRGSWYSYKEENVAQG 300

Query: 310 RENSKIFLRENIEIAENIESLLRQ 333
           R+N  ++L+EN E+   +E+ +R+
Sbjct: 301 RDNLVVYLKENPELLAEVEAAVRE 324


>gi|150021044|ref|YP_001306398.1| recombinase A [Thermosipho melanesiensis BI429]
 gi|166220690|sp|A6LM62|RECA_THEM4 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|149793565|gb|ABR31013.1| recA protein [Thermosipho melanesiensis BI429]
          Length = 349

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/332 (56%), Positives = 252/332 (75%), Gaps = 6/332 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K + L+ A+ +I++ +GKG+IM LG + ++ + IE +SSGS+ +DIA G+GG+P+GRIVE
Sbjct: 7   KKEVLKKAIGKIEKTFGKGSIMFLGEENAV-QNIETISSGSVAIDIASGVGGYPRGRIVE 65

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH IA +QK GG  AFVDAEHALD +YA+ LGVD++NLLI+QPD GE
Sbjct: 66  IYGPESSGKTTIALHAIASAQKNGGIAAFVDAEHALDPVYAKNLGVDVENLLIAQPDYGE 125

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRS AVD++VIDSVAAL PRAEIEG MG+   G+QARLMSQALRKL  +I+
Sbjct: 126 QALEIVDELVRSNAVDLVVIDSVAALVPRAEIEGSMGDVQVGLQARLMSQALRKLAGNIN 185

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +SK +++FINQ RMKIGVM+G+PETTTGG ALKFYS++RL++R +G I +     GNQ R
Sbjct: 186 KSKAVVIFINQTRMKIGVMYGNPETTTGGVALKFYSTMRLEVRSIGKITEGKESIGNQVR 245

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF-----KGQRL 306
           +K VKNK+A PFK+   D++YG+GI    EL +L V   ++ + G+WFS+         L
Sbjct: 246 IKFVKNKVAPPFKEAIVDVIYGKGIVRENELFNLAVDEGLISRRGSWFSYVDSTGTEHSL 305

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338
           GQG+ NS  +L  + E+ + IE  +R+  GL+
Sbjct: 306 GQGKNNSLDYLLNHPELLDEIEEKIREKHGLL 337


>gi|215271618|emb|CAR57842.1| recombination-repair protein [Vibrio harveyi]
 gi|215271620|emb|CAR57843.1| recombination-repair protein [Vibrio harveyi]
 gi|215271622|emb|CAR57844.1| recombination-repair protein [Vibrio harveyi]
 gi|215271624|emb|CAR57845.1| recombination-repair protein [Vibrio harveyi]
 gi|215271626|emb|CAR57846.1| recombination-repair protein [Vibrio harveyi]
 gi|215271628|emb|CAR57847.1| recombination-repair protein [Vibrio harveyi]
          Length = 271

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 183/272 (67%), Positives = 230/272 (84%), Gaps = 2/272 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG
Sbjct: 119 MVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+   
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANT 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
            IMYG+G +  GELIDLGVK  +V+K+GAW+S
Sbjct: 239 QIMYGQGFNREGELIDLGVKHKLVEKAGAWYS 270


>gi|290795101|gb|ADD64566.1| RecA recombinase [Vibrio tasmaniensis]
          Length = 269

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/271 (69%), Positives = 230/271 (84%), Gaps = 2/271 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           E  I+YG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 ETQILYGKGFNREGELIDLGVKNKLVEKAGA 269


>gi|58336988|ref|YP_193573.1| recombinase A [Lactobacillus acidophilus NCFM]
 gi|227903547|ref|ZP_04021352.1| recombination protein A [Lactobacillus acidophilus ATCC 4796]
 gi|76363334|sp|Q5FL82|RECA_LACAC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|58254305|gb|AAV42542.1| recombination protein [Lactobacillus acidophilus NCFM]
 gi|227868434|gb|EEJ75855.1| recombination protein A [Lactobacillus acidophilus ATCC 4796]
          Length = 363

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/358 (53%), Positives = 273/358 (76%), Gaps = 7/358 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K  AL+AAL +I++ +GKGA+M++G +      I  V +GSL LD A+G+GG+P+GRI+
Sbjct: 5   EKKAALDAALKKIEKNFGKGAVMRMGEKADT--QISTVPTGSLALDAAIGVGGYPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQP+TG
Sbjct: 63  EVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 123 EEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++K I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   IK    + GN+ 
Sbjct: 183 SKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQIKQSGDVLGNRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+     I+DK+G+W+S+K  R+GQGR
Sbjct: 243 KIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKSDRIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL----VADSLLQEPAINTKDD-ADKDDTDNVE 363
           EN+K +L E+ +I + ++  +RQ  G+    +AD    E     +++ ++++ TDN E
Sbjct: 303 ENAKKYLEEHPDIYQKVQEQVRQAYGIDEKSIADRENPEKIKEKREETSEENKTDNSE 360


>gi|184154987|ref|YP_001843327.1| recombinase A [Lactobacillus fermentum IFO 3956]
 gi|260663382|ref|ZP_05864273.1| RecA protein [Lactobacillus fermentum 28-3-CHN]
 gi|238692954|sp|B2GB15|RECA_LACF3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|183226331|dbj|BAG26847.1| recombinase A [Lactobacillus fermentum IFO 3956]
 gi|260552234|gb|EEX25286.1| RecA protein [Lactobacillus fermentum 28-3-CHN]
          Length = 353

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/350 (53%), Positives = 262/350 (74%), Gaps = 6/350 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL +I++ +GKG+IM++G        I  +SSGSL +D ALG+GG+P+GRI+E
Sbjct: 5   RKAALDNALRKIEKNFGKGSIMRMGDAADT--KIATISSGSLAIDEALGVGGYPRGRIIE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTT+ALH +A+ Q+ GGT A++DAE+ALD  YA  LGV + +LL+SQPDTGE
Sbjct: 63  MYGPESSGKTTVALHAVAEVQRRGGTAAYIDAENALDPQYATALGVQINDLLLSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q LEI D L+ SGAVDI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I+
Sbjct: 123 QGLEIADALIASGAVDIVVVDSVAALVPRAEIEGEMGDTHVGLQARLMSQALRKLSGEIN 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++R++IRR   +K+   + GN+ +
Sbjct: 183 KTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRMEIRRGEQLKNGTDVIGNRAK 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           +KVVKNK+A PF++ E DIMYGEGIS  GEL+D+ V+  +V+KSGAW+S+  +R+GQGRE
Sbjct: 243 IKVVKNKVAPPFRKAEVDIMYGEGISKTGELLDMAVEKDLVNKSGAWYSYGNERIGQGRE 302

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQ----EPAINTKDDADKD 357
           N+K +  ++ +    + + +R   G+  D        EP   T ++A  D
Sbjct: 303 NAKQWFADHEDAMNELMNKVRVAYGMEPDEAPATKEGEPQQETIEEASSD 352


>gi|229822966|ref|ZP_04449036.1| hypothetical protein GCWU000282_00258 [Catonella morbi ATCC 51271]
 gi|229787779|gb|EEP23893.1| hypothetical protein GCWU000282_00258 [Catonella morbi ATCC 51271]
          Length = 348

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/324 (57%), Positives = 251/324 (77%), Gaps = 2/324 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+ AL  I++ +GKG+IM+LG +  +   I  + SGSL LDIALG+GG+P+GRI+
Sbjct: 4   DRKKALDKALKDIEKSFGKGSIMRLGEK--VDTKISTIPSGSLALDIALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E YGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD  YA  LGV++  LL+SQPDTG
Sbjct: 62  ECYGPESSGKTTVALHAIAEVQKQGGLAAFIDAEHALDPDYAAALGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ L I D LV SGAVDIIVIDSVAAL PRAEI+G+MG++  G+QARLMSQALRKL+ ++
Sbjct: 122 EQGLAIADALVTSGAVDIIVIDSVAALVPRAEIDGEMGDAHVGLQARLMSQALRKLSGNV 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I  FINQ+R K+G+MFG+PETT GG ALKFYS+VRL++R+   IK+   + G++ 
Sbjct: 182 NKTKTICFFINQLREKVGIMFGNPETTPGGRALKFYSTVRLEVRKAELIKNGSDVIGSRA 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK+   DI+YG+GIS  GEL+D+     IV+K+G+W+S+   R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKEALVDIVYGKGISKVGELVDMAADLDIVNKAGSWYSYGEARIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQN 334
           E +K +L +N E+   IE+ +R +
Sbjct: 302 EAAKQYLLDNPEVQAEIEARVRAH 325


>gi|211907504|gb|ACJ12281.1| RecA [Vibrio agarivorans]
          Length = 268

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/270 (69%), Positives = 229/270 (84%), Gaps = 2/270 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D
Sbjct: 59  IAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAID 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR GSIKD D + GN+TR+KVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEVVGNETRIKVVKNKIAAPFKQAE 238

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGA 297
             I+YG+G +  GELIDLGVK  +++K+GA
Sbjct: 239 TQILYGQGFNREGELIDLGVKNKLIEKAGA 268


>gi|179185423|gb|ACB78181.1| RecA [Aliivibrio finisterrensis]
          Length = 271

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 184/273 (67%), Positives = 229/273 (83%), Gaps = 2/273 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA 
Sbjct: 1   SIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD++V
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+ VVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVIGNETRIXVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
           +YG G +  GELIDLGVK  +VDK+GAW+S+ G
Sbjct: 239 LYGXGFNREGELIDLGVKHKLVDKAGAWYSYNG 271


>gi|288818102|ref|YP_003432450.1| RecA protein [Hydrogenobacter thermophilus TK-6]
 gi|288787502|dbj|BAI69249.1| RecA protein [Hydrogenobacter thermophilus TK-6]
 gi|308751703|gb|ADO45186.1| recA protein [Hydrogenobacter thermophilus TK-6]
          Length = 338

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/333 (57%), Positives = 251/333 (75%), Gaps = 2/333 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           +E   V+K KALE+ LS I+R +GKG+IM L +   +   ++V+ +GSL LDIA GIGG 
Sbjct: 3   EEKETVEKRKALESVLSVIERKFGKGSIMPLKNAEKV--KVDVIPTGSLSLDIATGIGGI 60

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EI+GPESSGKTTLALH IA +Q+ GG   F+DAEHALD  YA K+GV+ ++L I
Sbjct: 61  PKGRIIEIFGPESSGKTTLALHVIASAQRMGGVAVFIDAEHALDPKYAEKIGVNTESLYI 120

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI + LV S AVD+IV+DSVAAL P+ E+EG+MGE+  G QARLMSQALR
Sbjct: 121 SQPDYGEQALEIVESLVASNAVDVIVVDSVAALVPKDELEGEMGEAHVGKQARLMSQALR 180

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KL     ++   ++FINQ+R KIGVMFG+PETT GG ALKF++ +RLD+R+VG IKD + 
Sbjct: 181 KLKGMAHKANTAIIFINQLREKIGVMFGNPETTPGGRALKFFADMRLDVRKVGDIKDSND 240

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
             GN+ RVKVVKNK+A PF++ EFD++YGEGI    +LID+  +  ++++SGAW+S+   
Sbjct: 241 KVGNRVRVKVVKNKLAPPFQEAEFDVIYGEGICKLCDLIDIATELKVLNRSGAWYSYGEL 300

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           +LGQG++  K FL EN E+A  IE  +R+  GL
Sbjct: 301 KLGQGKDQVKKFLMENPELAGEIEQKVREVVGL 333


>gi|227893177|ref|ZP_04010982.1| recombination protein A [Lactobacillus ultunensis DSM 16047]
 gi|227865043|gb|EEJ72464.1| recombination protein A [Lactobacillus ultunensis DSM 16047]
          Length = 369

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/332 (56%), Positives = 262/332 (78%), Gaps = 2/332 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K  AL+AAL +I++ +GKGA+M++G +      I  VS+GSL LD A+G+GG+P+GRI+
Sbjct: 5   EKKAALDAALKKIEKNFGKGAVMRMGEKADT--QISTVSTGSLALDAAIGVGGYPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQP+TG
Sbjct: 63  EVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 123 EEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK    + GN+ 
Sbjct: 183 SKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGEVLGNRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+     I+DK+G+W+S+K  R+GQGR
Sbjct: 243 KIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKSDRIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL 342
           EN+K +L E+ +I ++I+  +R+  G+   S+
Sbjct: 303 ENAKKYLEEHPDIYQDIQEQVRKAYGIDKQSI 334


>gi|58415477|emb|CAH57153.1| recA protein [Vibrio fortis]
          Length = 265

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/267 (69%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMKLGDNKTM--DVETVSTGSLALDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD IYARKLGVD+  LL+SQPDTGEQALEI D L RSGAVD++V
Sbjct: 59  AQKEGKTCAFIDAEHALDPIYARKLGVDIDQLLVSQPDTGEQALEIADALARSGAVDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RK+T ++  S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKITGNLKSSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIKD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G + +GELIDLGVK  +V+K+GA
Sbjct: 239 LYGKGFNRYGELIDLGVKHKLVEKAGA 265


>gi|218441026|ref|YP_002379355.1| recombinase A [Cyanothece sp. PCC 7424]
 gi|226737753|sp|B7KLB5|RECA_CYAP7 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|218173754|gb|ACK72487.1| recA protein [Cyanothece sp. PCC 7424]
          Length = 356

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/327 (57%), Positives = 250/327 (76%), Gaps = 4/327 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  DK KAL   L+QI+R +GKG+IM+LG    +   +E + SG+L LD+ALG GG PKG
Sbjct: 6   NNPDKEKALNLVLNQIERSFGKGSIMRLGDAARMR--VETIPSGALTLDLALG-GGLPKG 62

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R++EIYGPESSGKTTLALH IA+ QK GG  AFVDAEHALD  Y+  LGVD+ NLL++QP
Sbjct: 63  RVIEIYGPESSGKTTLALHAIAEVQKAGGVAAFVDAEHALDPTYSEVLGVDIHNLLVAQP 122

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGE ALEI D LVRS AVDI+V+DSVAAL PRAEIEG+MG++  G+QARLMS+ALRK+ 
Sbjct: 123 DTGESALEIVDQLVRSAAVDIVVVDSVAALVPRAEIEGEMGDNQVGLQARLMSKALRKIA 182

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSIT 246
            +I +S C+++F+NQ+R KIGV +GSPE TTGG ALKFY+SVRLDIRR+ ++K   +   
Sbjct: 183 GNIGKSGCVVIFLNQLRQKIGVTYGSPEVTTGGTALKFYASVRLDIRRIQTLKKGSEGEY 242

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G + +VKV KNK+A PF+  EFDI++G+GIS  G +ID+     ++ + GAW+S+ G+ +
Sbjct: 243 GIRAKVKVAKNKVAPPFRIAEFDIIFGKGISQMGCMIDMAEHTDVITRKGAWYSYNGENI 302

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333
            QGR+N+  +L EN+++A  IE  +R+
Sbjct: 303 AQGRDNAVKYLEENLDVAAIIEKQVRE 329


>gi|89145040|emb|CAJ57528.1| recombinase A [Microbacterium oxydans]
          Length = 267

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 184/266 (69%), Positives = 221/266 (83%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LD+ALG+GG P+GRIVEIYGPESSGKTTL LH IA +Q+ GG  AF+DAEHALD  YA K
Sbjct: 2   LDVALGVGGLPRGRIVEIYGPESSGKTTLTLHAIANAQRAGGIAAFIDAEHALDPDYAAK 61

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           LGVD+  LL+SQPDTGEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+
Sbjct: 62  LGVDIDALLVSQPDTGEQALEIADMLVRSGAIDLIVIDSVAALVPRAEIEGEMGDSHVGL 121

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
           QARLMSQALRKLT  ++++   ++FINQ+R KIGV FGSPETT GG ALKFY+SVR+DIR
Sbjct: 122 QARLMSQALRKLTGGLNQTNTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRMDIR 181

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK 294
           R+ ++KD     GN+TRVKVVKNKMA PFKQ EFDI+YG GIS  G LID GV+ +IV K
Sbjct: 182 RIETLKDGTDAVGNRTRVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDFGVEHAIVKK 241

Query: 295 SGAWFSFKGQRLGQGRENSKIFLREN 320
           SG+W+++ G +LGQG+EN++ FL  N
Sbjct: 242 SGSWYTYDGDQLGQGKENARTFLLNN 267


>gi|20178061|sp|Q9EVV7|RECA_STRTR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|12055066|emb|CAC21189.1| RecA protein [Streptococcus thermophilus]
          Length = 379

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/332 (57%), Positives = 255/332 (76%), Gaps = 6/332 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I + +GKGA+M+LG +    E ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERWKALDDALKNIGKDFGKGAVMRLGERAE--EKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIACKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+G+MFG+PETT GG ALKFY+ V LD+R    IK     KD   
Sbjct: 196 NKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYAYVALDVRGNTQIKGTGDKKDQNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDIGIIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338
           GQG EN+K +L ++ EI   I+  +R + GL+
Sbjct: 316 GQGSENAKKYLADHPEIFAEIDHKVRVHYGLI 347


>gi|296837367|gb|ADH59542.1| DNA recombinase [Burkholderia cepacia]
          Length = 258

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 183/258 (70%), Positives = 226/258 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEI
Sbjct: 1   SSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+
Sbjct: 61  TDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCL 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVK
Sbjct: 121 VIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVK 180

Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316
           NK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ F
Sbjct: 181 NKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREF 240

Query: 317 LRENIEIAENIESLLRQN 334
           LREN EIA  IE+ +R++
Sbjct: 241 LRENPEIAREIENRIRES 258


>gi|329943334|ref|ZP_08292108.1| protein RecA [Chlamydophila psittaci Cal10]
 gi|313848483|emb|CBY17487.1| recombinase A [Chlamydophila psittaci RD1]
 gi|325506502|gb|ADZ18140.1| recombinase A [Chlamydophila psittaci 6BC]
 gi|328814881|gb|EGF84871.1| protein RecA [Chlamydophila psittaci Cal10]
 gi|328915175|gb|AEB56008.1| recA protein [Chlamydophila psittaci 6BC]
          Length = 349

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 185/323 (57%), Positives = 254/323 (78%), Gaps = 2/323 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN+ D+ KALEAA++ I++ +G G+IM LG   +  E I  + +G+L LD+ALGIGG PK
Sbjct: 1   MNVPDRKKALEAAIAYIEKQFGSGSIMSLGKHSASHE-ISTIKTGALSLDLALGIGGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEI+GPESSGKTTLA H +A +QK GG  A++DAEHALD  YA  +G ++ +L+ISQ
Sbjct: 60  GRIVEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPSYASLIGANINDLMISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GE AL I ++L RSGAVD+IVIDSVAAL P++E+EGD+G+   G+QAR+MSQALRKL
Sbjct: 120 PDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGDIGDVHVGLQARMMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI- 245
           T++++RS+   +FINQ+R KIGV FG+PETTTGG ALKFYSS+R+DIRR+G+IK  +S  
Sbjct: 180 TATLARSQTCAIFINQIREKIGVSFGNPETTTGGRALKFYSSIRMDIRRIGAIKGNESFD 239

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+ +VKV KNK+A PF+  EFDI++ EGIS  G ++DL V+ +IV+K G+WF+++ ++
Sbjct: 240 LGNRIKVKVAKNKLAPPFRTAEFDILFNEGISSAGCILDLAVEYNIVEKKGSWFNYQDRK 299

Query: 306 LGQGRENSKIFLRENIEIAENIE 328
           LGQGRE  +  L++N ++ E +E
Sbjct: 300 LGQGREAVREELKKNKKLLEELE 322


>gi|148536412|gb|ABQ85758.1| RecA [Photobacterium iliopiscarium]
          Length = 267

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/269 (69%), Positives = 228/269 (84%), Gaps = 2/269 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMKLGDNKTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            I+ +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGAV
Sbjct: 59  VISAAQKQGKTCAFIDAEHALDPIYAQKLGVDINELLVSQPDTGEQALEIVDALARSGAV 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKS 295
           E  I+YG+G +  GELIDLGVK  +V+K+
Sbjct: 239 ETQILYGQGFNRNGELIDLGVKNKLVEKA 267


>gi|256830943|ref|YP_003159671.1| recA protein [Desulfomicrobium baculatum DSM 4028]
 gi|256580119|gb|ACU91255.1| recA protein [Desulfomicrobium baculatum DSM 4028]
          Length = 353

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/327 (60%), Positives = 263/327 (80%), Gaps = 3/327 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + +ALE AL+ I+R YG G++M+L    +  + + V+ +GS+GLD+ALG+GG P+GR+ E
Sbjct: 13  RREALETALATIERRYGLGSVMRLSD--TSHQVVPVIPTGSIGLDLALGVGGIPRGRVTE 70

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPESSGKTT ALH IA++QK GG  AF+DAEHALD  YAR+LGV  ++LLISQPD GE
Sbjct: 71  IFGPESSGKTTQALHIIAEAQKRGGVAAFIDAEHALDINYARRLGVKTEDLLISQPDYGE 130

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DMLVRS AVD++V+DSVAAL P+AE+EG MGE+  G QARLMS A+RKLT +I 
Sbjct: 131 QALEIADMLVRSSAVDVVVVDSVAALIPQAELEGSMGETQVGGQARLMSHAMRKLTGTIH 190

Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +S+  ++FINQ+RMKIG+  +GSPETTTGGNALKFY+SVRLD+RR+ ++KDK+   GN+ 
Sbjct: 191 KSRTSIIFINQLRMKIGMTGYGSPETTTGGNALKFYASVRLDLRRIQTLKDKEESYGNRV 250

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PF++ E+D+++G GIS  GELIDLGV+  +VDKSGAW++F  +RLGQG+
Sbjct: 251 RVKVVKNKMAPPFREAEYDVLFGTGISRVGELIDLGVEQGVVDKSGAWYAFGSERLGQGK 310

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN + FL++N E+   IE  L ++ G+
Sbjct: 311 ENVRAFLQDNDELRMQIERALLEHLGM 337


>gi|58415542|emb|CAH57185.1| recA protein [Aliivibrio logei]
 gi|58415544|emb|CAH57186.1| recA protein [Aliivibrio logei]
 gi|164608452|gb|ABY62529.1| recombinase A [Aliivibrio logei]
 gi|164608454|gb|ABY62530.1| recombinase A [Aliivibrio logei]
 gi|164608456|gb|ABY62531.1| recombinase A [Aliivibrio logei]
 gi|164608462|gb|ABY62534.1| recombinase A [Aliivibrio wodanis]
 gi|164608464|gb|ABY62535.1| recombinase A [Aliivibrio wodanis]
 gi|164608466|gb|ABY62536.1| recombinase A [Aliivibrio wodanis]
 gi|164608468|gb|ABY62537.1| recombinase A [Aliivibrio sp. ATCC 33715]
 gi|164608470|gb|ABY62538.1| recombinase A [Vibrio sp. cann.1.1]
 gi|164608472|gb|ABY62539.1| recombinase A [Vibrio sp. cann.1.2]
 gi|164608474|gb|ABY62540.1| recombinase A [Vibrio sp. cann.1.3]
 gi|164608476|gb|ABY62541.1| recombinase A [Vibrio sp. cann.1.4]
 gi|164608478|gb|ABY62542.1| recombinase A [Vibrio sp. cann.2.1]
 gi|164608480|gb|ABY62543.1| recombinase A [Vibrio sp. cann.2.2]
 gi|164608482|gb|ABY62544.1| recombinase A [Vibrio sp. cann.2.3]
 gi|164608484|gb|ABY62545.1| recombinase A [Vibrio sp. cann.2.4]
 gi|164608486|gb|ABY62546.1| recombinase A [Vibrio sp. cann.2.5]
 gi|164608488|gb|ABY62547.1| recombinase A [Vibrio sp. cann.2.6]
 gi|164608490|gb|ABY62548.1| recombinase A [Vibrio sp. MdR7]
 gi|164608492|gb|ABY62549.1| recombinase A [Vibrio sp. SA5]
 gi|164608494|gb|ABY62550.1| recombinase A [Vibrio sp. SA6]
          Length = 265

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/267 (70%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IAQ
Sbjct: 1   SIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEAIAQ 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD IYA+KLGVD+  LL SQPDTGEQALEI D L RSGAVD+IV
Sbjct: 59  AQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLCSQPDTGEQALEIVDALARSGAVDVIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GELIDLGVK  +VDK+GA
Sbjct: 239 LYGKGFNREGELIDLGVKHKLVDKAGA 265


>gi|302567255|gb|ADL41323.1| recombinase A [Propionibacterium acnes]
 gi|302567257|gb|ADL41324.1| recombinase A [Propionibacterium acnes]
 gi|302567259|gb|ADL41325.1| recombinase A [Propionibacterium acnes]
 gi|302567261|gb|ADL41326.1| recombinase A [Propionibacterium acnes]
 gi|302567263|gb|ADL41327.1| recombinase A [Propionibacterium acnes]
          Length = 269

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 182/267 (68%), Positives = 224/267 (83%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GRIVEIYGPESSGKTT+ALH IA +Q  GG CAF+DAEHAL
Sbjct: 3   IPTGSVALDVALGVGGLPRGRIVEIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHAL 62

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YARKLGVD  +LL+SQPD GEQALEI D LVRSGA+++IV+DSVAALTP+AEIEG+M
Sbjct: 63  DPEYARKLGVDTDSLLVSQPDNGEQALEIADTLVRSGALELIVVDSVAALTPKAEIEGEM 122

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T +++ +    +FINQ+R KIGVMFGSPETTTGG ALKFYS
Sbjct: 123 GDSHVGLQARLMSQALRKMTGALNAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYS 182

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           SVRLD+RRV ++KD   + GN+TRVKV KNK+A PFKQ EFDI+YG+GIS  G LID+GV
Sbjct: 183 SVRLDVRRVETLKDGSEMVGNRTRVKVAKNKVAPPFKQAEFDILYGQGISREGSLIDMGV 242

Query: 288 KASIVDKSGAWFSFKGQRLGQGRENSK 314
              I+ KSG+WFS+  ++LGQG+EN +
Sbjct: 243 DCGIITKSGSWFSYNNEQLGQGKENVR 269


>gi|295426396|ref|ZP_06819046.1| recombination protein A [Lactobacillus amylolyticus DSM 11664]
 gi|295063764|gb|EFG54722.1| recombination protein A [Lactobacillus amylolyticus DSM 11664]
          Length = 370

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 185/327 (56%), Positives = 259/327 (79%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K  AL+AAL +I++ +GKGA+M++G +      I  V +GS+ LD ALG+GG+P+GRI+
Sbjct: 5   EKKAALDAALKKIEKNFGKGAVMRMGEKADT--QISTVPTGSIALDAALGVGGYPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQP+TG
Sbjct: 63  EVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 123 EEGLQIADTLISSGAIDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK    + GN+ 
Sbjct: 183 SKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDVLGNRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+     I+DK+G+W+S+K  R+GQGR
Sbjct: 243 KIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKSDRIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K +L ++ +I + IE+ +RQ  G+
Sbjct: 303 ENAKKYLEDHPDIYQEIETQVRQAYGI 329


>gi|290795099|gb|ADD64565.1| RecA recombinase [Vibrio tasmaniensis]
          Length = 270

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/271 (68%), Positives = 230/271 (84%), Gaps = 2/271 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 2   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 60  LIAAAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 120 DVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           E  I+YG+G +  GELIDLGVK  +V+K+GA
Sbjct: 240 ETQILYGKGFNREGELIDLGVKNKLVEKAGA 270


>gi|114566781|ref|YP_753935.1| hypothetical protein Swol_1255 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337716|gb|ABI68564.1| RecA protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 344

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/344 (58%), Positives = 273/344 (79%), Gaps = 6/344 (1%)

Query: 6   EMNIVDKSK--ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           E+N V+K K  AL + +  I++ +GKG+IM+LG   ++   +EV+S+G + LD+ALG+GG
Sbjct: 2   EINEVNKGKMEALNSTIKNIEKQFGKGSIMKLGE--AVNMNVEVISTGCISLDLALGVGG 59

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P+GR++EI+GPESSGKTT+ALH IAQ+QK GG  AF+DAEHALD +YARKLGVD+ NLL
Sbjct: 60  IPRGRVIEIFGPESSGKTTVALHAIAQAQKDGGMAAFIDAEHALDPLYARKLGVDINNLL 119

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPD+GEQALEI + LVRSGAVDIIVIDSVAAL PRAE++G+MG+   G+QARLMSQAL
Sbjct: 120 VSQPDSGEQALEIAEALVRSGAVDIIVIDSVAALVPRAELDGEMGDIHVGLQARLMSQAL 179

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT+ I +S   ++FINQ+R K+GV++G+PETTTGG ALKFYSSVR+++R+  +IK   
Sbjct: 180 RKLTAHIGKSNACVLFINQIREKVGVVYGNPETTTGGRALKFYSSVRIEVRKGEAIKQGT 239

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+T+VKVVKNK+A PFK  EFDIMYG GIS  G+L+D+ V   I+ KSG+W++++G
Sbjct: 240 DLIGNKTKVKVVKNKVAPPFKTAEFDIMYGIGISREGDLLDIAVTTDIIQKSGSWYAYQG 299

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLR--QNAGLVADSLLQE 345
           +RLGQGREN+K +L+ + E    +ES ++  +  G  A + L+E
Sbjct: 300 ERLGQGRENAKEYLKNHPEFMTLLESRIKDWKQEGNAASNSLEE 343


>gi|54792196|emb|CAE54414.1| recombination-repair protein [Grimontia hollisae]
          Length = 255

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/257 (72%), Positives = 222/257 (86%), Gaps = 2/257 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   IE VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDDRTM--DIETVSTGSLSLDIALGAGGLPYGRIVEIYGPESSGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA++QK G TCAF+DAEHALD IYARKL VD+ NLL+SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAEAQKQGKTCAFIDAEHALDPIYARKLNVDIDNLLVSQPDTGEQALEIADALTRSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +I+IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT++I  S  +++FINQ+RMKI
Sbjct: 119 VIIIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D + GN TRVKVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEVVGNDTRVKVVKNKIAAPFKQAE 238

Query: 268 FDIMYGEGISFFGELID 284
           F I+YGEGI+ +GELID
Sbjct: 239 FQILYGEGINLYGELID 255


>gi|300869353|ref|ZP_07113943.1| Protein recA [Oscillatoria sp. PCC 6506]
 gi|300332652|emb|CBN59141.1| Protein recA [Oscillatoria sp. PCC 6506]
          Length = 359

 Score =  391 bits (1005), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/353 (58%), Positives = 264/353 (74%), Gaps = 5/353 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL   L+QI+R +GKGAI++LG    +   +E + SG+L LDIALG GG PKGR++
Sbjct: 10  EKQKALNLVLNQIERSFGKGAIVRLGDATRMR--VETIPSGALTLDIALG-GGLPKGRVI 66

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH IA+ QK+GG  AFVDAEHALD  YA  LGVD+ NLL+SQPDTG
Sbjct: 67  EIYGPESSGKTTLALHAIAEVQKSGGIAAFVDAEHALDPSYASVLGVDIVNLLVSQPDTG 126

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D LVRS AVDI+V+DSVAAL PRAEIEGDMG+S  G+QARLMSQALRK+T +I
Sbjct: 127 EMALEIVDQLVRSVAVDIVVVDSVAALVPRAEIEGDMGDSHMGLQARLMSQALRKITGNI 186

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C ++F+NQ+R KIGV +G+PETTTGGNALKFY+SVRLDIRR+ S+K      GN+ 
Sbjct: 187 GKSGCTVIFLNQLRQKIGVTYGNPETTTGGNALKFYASVRLDIRRIQSLKKGTEEYGNRV 246

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV KNK+A PF+  EFDI++G+GIS  G L+DL  +  I+ K G+W+S+ G  +GQGR
Sbjct: 247 KVKVAKNKVAPPFRIAEFDIVFGKGISTTGCLVDLAEETGIITKKGSWYSYNGDNIGQGR 306

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           E +  +  EN E    IE L+RQ   L + +++   ++   D  D ++ ++VE
Sbjct: 307 ETTIKYTDENPEFKTQIEQLVRQK--LASGAVVSANSVAPIDAEDSEEAEDVE 357


>gi|330719360|ref|ZP_08313960.1| recombinase A [Leuconostoc fallax KCTC 3537]
          Length = 379

 Score =  391 bits (1005), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/306 (63%), Positives = 247/306 (80%), Gaps = 2/306 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL +I++ +GKG+IM+LG        +E + SGS+ LDIALG+GG+PKGRI+E
Sbjct: 17  REAALQEALKKIEKNFGKGSIMKLGDNN--LTRVETIPSGSVKLDIALGVGGYPKGRIIE 74

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  YA  LGVD K LL+SQPDTGE
Sbjct: 75  VYGPESSGKTTIALHAVAEVQKQGGTAAYIDAENALDVKYAEALGVDSKELLLSQPDTGE 134

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q LEI D LV+SGAVD+IV+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL  +++
Sbjct: 135 QGLEIADALVQSGAVDMIVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLAGTLN 194

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           R+  I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   IKD   +TGN T+
Sbjct: 195 RTGTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRSTQIKDGSEVTGNLTK 254

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF+  E DIMYG+GIS  GELIDL V+  IVDKSGAW++++G+R+GQGRE
Sbjct: 255 VKVVKNKVAPPFRVAEVDIMYGKGISQTGELIDLAVEKDIVDKSGAWYAYEGERIGQGRE 314

Query: 312 NSKIFL 317
             K FL
Sbjct: 315 KVKEFL 320


>gi|323466949|gb|ADX70636.1| Recombinase A [Lactobacillus helveticus H10]
          Length = 365

 Score =  391 bits (1005), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/353 (53%), Positives = 269/353 (76%), Gaps = 13/353 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K  AL+AAL +I++ +GKGA+M++G +      I  V +GSL LD A+G+GG+P+GRI+
Sbjct: 5   EKKAALDAALKKIEKNFGKGAVMRMGEKADT--QISTVPTGSLALDAAIGVGGYPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQP+TG
Sbjct: 63  EVYGPESSGKTTVALHAVAEVQKHGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 123 EEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK    + GN+ 
Sbjct: 183 SKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDVIGNRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+     I+DK+G+W+S+K  R+GQGR
Sbjct: 243 KIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKSDRIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           EN+K +L ++ +I ++I+  +RQ  G           I+ K  AD++D + ++
Sbjct: 303 ENAKKYLEDHPDIYQDIQQQVRQAYG-----------IDEKSVADREDPEKIK 344


>gi|327398415|ref|YP_004339284.1| Protein recA [Hippea maritima DSM 10411]
 gi|327181044|gb|AEA33225.1| Protein recA [Hippea maritima DSM 10411]
          Length = 338

 Score =  391 bits (1005), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/323 (61%), Positives = 257/323 (79%), Gaps = 3/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K ++L  A+S+I++++GKGA+M+LG   ++   + V+ +G L LD ALG+ G P+GRI+E
Sbjct: 5   KLQSLNMAISKIEKMFGKGALMKLGDVKAV--DVNVIPTGILSLDYALGVCGIPRGRIIE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYG ESSGKTTLALH IA +Q+ GG  AFVDAEHALD  YA KLGVD+ NLL+SQPD+GE
Sbjct: 63  IYGQESSGKTTLALHCIAAAQREGGLAAFVDAEHALDVYYAEKLGVDVDNLLVSQPDSGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RS AVD+IV+DSVAAL P+AEIEGDMG++  G+QARLMSQALRKLT +IS
Sbjct: 123 QALEIIDTLIRSNAVDLIVVDSVAALVPQAEIEGDMGDAHVGLQARLMSQALRKLTGAIS 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS-IKDKDSITGNQT 250
           +S   ++F+NQ+RMKIGVMFG+PETTTGGNALKFYSS+R++IR+ GS IK      GN+ 
Sbjct: 183 KSNTSIIFLNQIRMKIGVMFGNPETTTGGNALKFYSSIRMEIRKSGSPIKQGSEAVGNRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PFK+ EFDI+YG G+   G+L+DL V   IV+KSG+WFS+  +RLGQGR
Sbjct: 243 KVKVVKNKVAPPFKEAEFDILYGVGVDKIGDLLDLAVAHDIVEKSGSWFSYNNERLGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           +N+K FL+   ++ E IE  LR 
Sbjct: 303 DNAKEFLKGRGDLLEEIERKLRN 325


>gi|295698290|ref|YP_003602945.1| protein RecA [Candidatus Riesia pediculicola USDA]
 gi|291157452|gb|ADD79897.1| protein RecA [Candidatus Riesia pediculicola USDA]
          Length = 332

 Score =  391 bits (1005), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/328 (59%), Positives = 261/328 (79%), Gaps = 6/328 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK K+++  L QI++ +GKG+IM+LG   S+   +E +S+G L LD+ALG+GG P GRIV
Sbjct: 6   DKMKSIDLVLDQIEKQFGKGSIMRLGQDRSM--KVEAISTGLLSLDVALGVGGLPLGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  I+ +QK   TCAF+DAEHALD  YA+K+GVD+ NLL SQPD G
Sbjct: 64  EIYGPESSGKTTLTLQIISSAQKEKKTCAFIDAEHALDPSYAQKIGVDVDNLLCSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L++SG VD+IVIDSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL S++
Sbjct: 124 EQALEICDALIKSGTVDVIVIDSVAALTPKAEIEGEIGDSHIGLAARMMSQAMRKLASNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
                +L+FINQ+RMKIGVMFG+ ETTTGGNALKFY+S+RLDIR++GSIK+ + I G+ T
Sbjct: 184 KNFNVLLIFINQIRMKIGVMFGNSETTTGGNALKFYASIRLDIRKIGSIKNGEEIIGSST 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF I+YGEGI+ +GE+IDL V+  +++KSG+W++++G+++GQG+
Sbjct: 244 RVKVVKNKVAVPFKQAEFQILYGEGINIYGEIIDLAVQYKLIEKSGSWYNYQGKQIGQGK 303

Query: 311 ENSKIFLRENI----EIAENIESLLRQN 334
            N   +L+  +    E+ E + S L +N
Sbjct: 304 VNVSNYLKSKMDFYRELNEKLRSFLFEN 331


>gi|159029342|emb|CAO90208.1| recA [Microcystis aeruginosa PCC 7806]
          Length = 355

 Score =  391 bits (1005), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/326 (58%), Positives = 250/326 (76%), Gaps = 4/326 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  D+ KAL   L+QI+R +GKG+IM+LG    +   +E V SG+L LD+ALG GG PKG
Sbjct: 6   NNSDRDKALGLVLNQIERNFGKGSIMRLGDATRMR--VETVPSGALTLDMALG-GGLPKG 62

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTLALH IA+ QK GG  AFVDAEHALD  Y+  LGVD+ NLL++QP
Sbjct: 63  RIVEIYGPESSGKTTLALHAIAEVQKAGGVAAFVDAEHALDPTYSEDLGVDINNLLVAQP 122

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGE ALEI D LVRS AVDI+VIDSVAAL PRAEIEG+MG++  G+QARLMS+ALRK+ 
Sbjct: 123 DTGEAALEIVDQLVRSSAVDIVVIDSVAALVPRAEIEGEMGDNQVGLQARLMSKALRKIA 182

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSIT 246
            +I +S C+++F+NQ+R KIGV +G+PE TTGG ALKFY+SVRLDIRR+ ++K   +   
Sbjct: 183 GNIGKSGCVVIFLNQLRQKIGVTYGNPEVTTGGTALKFYASVRLDIRRIQTLKKGTEGEY 242

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G + +VKV KNK+A PF+  EFDI++G+GIS  G ++D+  + ++V + GAW+S+ G+ +
Sbjct: 243 GIRAKVKVAKNKVAPPFRIAEFDIIFGKGISQVGCMLDIAEQTNVVTRKGAWYSYNGENI 302

Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332
            QGR+N+  +L E  E+A  IE LLR
Sbjct: 303 AQGRDNAVKYLEERPEVAAEIEKLLR 328


>gi|302567265|gb|ADL41328.1| recombinase A [Propionibacterium acnes]
 gi|302567267|gb|ADL41329.1| recombinase A [Propionibacterium acnes]
 gi|302567269|gb|ADL41330.1| recombinase A [Propionibacterium acnes]
          Length = 269

 Score =  391 bits (1005), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 181/267 (67%), Positives = 224/267 (83%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GRIVEIYGPESSGKTT+ALH IA +Q  GG CAF+DAEHAL
Sbjct: 3   IPTGSVALDVALGVGGLPRGRIVEIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHAL 62

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YARKLGVD  +LL+SQPD GEQALEI D LVRSGA++++V+DSVAALTP+AEIEG+M
Sbjct: 63  DPEYARKLGVDTDSLLVSQPDNGEQALEIADTLVRSGALELVVVDSVAALTPKAEIEGEM 122

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T +++ +    +FINQ+R KIGVMFGSPETTTGG ALKFYS
Sbjct: 123 GDSHVGLQARLMSQALRKMTGALNAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYS 182

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           SVRLD+RRV ++KD   + GN+TRVKV KNK+A PFKQ EFDI+YG+GIS  G LID+GV
Sbjct: 183 SVRLDVRRVETLKDGSEMVGNRTRVKVAKNKVAPPFKQAEFDILYGQGISREGSLIDMGV 242

Query: 288 KASIVDKSGAWFSFKGQRLGQGRENSK 314
              I+ KSG+WFS+  ++LGQG+EN +
Sbjct: 243 DCGIITKSGSWFSYNNEQLGQGKENVR 269


>gi|126657745|ref|ZP_01728899.1| recombinase A [Cyanothece sp. CCY0110]
 gi|126620962|gb|EAZ91677.1| recombinase A [Cyanothece sp. CCY0110]
          Length = 347

 Score =  391 bits (1005), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/327 (58%), Positives = 251/327 (76%), Gaps = 4/327 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  DK KAL   L+QI+R +GKG+IM+LG    +   +E +S+G+L LD+ALG GG P G
Sbjct: 6   NNPDKEKALGLVLNQIERNFGKGSIMRLGDAARM--KVETISTGALTLDLALG-GGLPMG 62

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R+VEIYGPESSGKTTLALH IA+ QK GG  AFVDAEHALD  Y+  LGVD+ NLL++QP
Sbjct: 63  RVVEIYGPESSGKTTLALHAIAEVQKAGGVAAFVDAEHALDPTYSAALGVDINNLLVAQP 122

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGE ALEI D LVRS AVD++VIDSVAAL PRAEIEG+MG++  G+QARLMS+ALRK+ 
Sbjct: 123 DTGESALEIVDQLVRSAAVDVVVIDSVAALVPRAEIEGEMGDTQVGLQARLMSKALRKIA 182

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSIT 246
            +I +S C+++F+NQ+R KIGV +GSPE TTGG ALKFY+SVRLDIRR+ ++K   +   
Sbjct: 183 GNIGKSGCVVIFLNQLRQKIGVTYGSPEVTTGGTALKFYASVRLDIRRIQTLKKGSEGEY 242

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G + +VKV KNK+A PF+  EFDI++G+GIS  G ++DL  ++ +V + GAW+S+ G  +
Sbjct: 243 GIRAKVKVAKNKVAPPFRIAEFDIIFGQGISQMGCMLDLAEQSDVVLRKGAWYSYNGDNI 302

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333
            QGR+N+  +L EN +IAE IE  +R+
Sbjct: 303 SQGRDNAVKYLEENPKIAETIEQQVRE 329


>gi|172039552|ref|YP_001806053.1| recombinase A [Cyanothece sp. ATCC 51142]
 gi|226723626|sp|B1WW59|RECA_CYAA5 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|171701006|gb|ACB53987.1| recombination protein [Cyanothece sp. ATCC 51142]
          Length = 349

 Score =  391 bits (1005), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/327 (58%), Positives = 251/327 (76%), Gaps = 4/327 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  DK KAL   L+QI+R +GKG+IM+LG    +   +E +S+G+L LD+ALG GG P G
Sbjct: 6   NNPDKEKALGLVLNQIERNFGKGSIMRLGDAARM--KVETISTGALTLDLALG-GGLPMG 62

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R+VEIYGPESSGKTTLALH IA+ QK GG  AFVDAEHALD  Y+  LGVD+ NLL++QP
Sbjct: 63  RVVEIYGPESSGKTTLALHAIAEVQKAGGVAAFVDAEHALDPTYSAALGVDINNLLVAQP 122

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGE ALEI D LVRS AVD++VIDSVAAL PRAEIEG+MG++  G+QARLMS+ALRK+ 
Sbjct: 123 DTGESALEIVDQLVRSAAVDVVVIDSVAALVPRAEIEGEMGDTQVGLQARLMSKALRKIA 182

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSIT 246
            +I +S C+++F+NQ+R KIG+ +GSPE TTGG ALKFY+SVRLDIRR+ ++K   +   
Sbjct: 183 GNIGKSGCVVIFLNQLRQKIGITYGSPEVTTGGTALKFYASVRLDIRRIQTLKKGSEGEY 242

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G + +VKV KNK+A PF+  EFDI++G+GIS  G ++DL  ++ +V + GAW+S+ G  +
Sbjct: 243 GIRAKVKVAKNKVAPPFRIAEFDIIFGQGISRMGCMLDLAEQSDVVLRKGAWYSYNGDNI 302

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333
            QGR+N+  +L EN +IAE IE  +R+
Sbjct: 303 SQGRDNAVKYLEENPKIAETIEQQVRE 329


>gi|290795103|gb|ADD64567.1| RecA recombinase [Vibrio tasmaniensis]
          Length = 268

 Score =  391 bits (1005), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/270 (69%), Positives = 229/270 (84%), Gaps = 2/270 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D
Sbjct: 59  IAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAID 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAE 238

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGA 297
             I+YG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 TQILYGKGFNREGELIDLGVKNKLVEKAGA 268


>gi|148536408|gb|ABQ85756.1| RecA [Aliivibrio salmonicida]
 gi|164608460|gb|ABY62533.1| recombinase A [Aliivibrio salmonicida]
          Length = 265

 Score =  391 bits (1004), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/267 (70%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IAQ
Sbjct: 1   SIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAQ 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD IYA+KLGVD+  LL SQPDTGEQALEI D L RSGAVD+IV
Sbjct: 59  AQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLCSQPDTGEQALEIVDALARSGAVDLIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GELIDLGVK  +VDK+GA
Sbjct: 239 LYGKGFNREGELIDLGVKHKLVDKAGA 265


>gi|87307365|ref|ZP_01089510.1| RecA protein (Recombinase A) [Blastopirellula marina DSM 3645]
 gi|87290105|gb|EAQ81994.1| RecA protein (Recombinase A) [Blastopirellula marina DSM 3645]
          Length = 392

 Score =  391 bits (1004), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 184/342 (53%), Positives = 257/342 (75%), Gaps = 3/342 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +++    ++  +  L+  L QI++ +G+GAIM LGS  ++ EGI    +GS+ LD+ALG 
Sbjct: 34  EHKDVAGMLSGNAVLKTTLQQIEKSFGEGAIMPLGSNHAVIEGI---PTGSISLDLALGG 90

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
            G P+GR++EI+GPESSGKTTLALH IAQ+Q  GG  AFVDAEHALD  +A+KLGV+L+ 
Sbjct: 91  KGLPRGRVIEIFGPESSGKTTLALHVIAQAQAMGGIAAFVDAEHALDPSWAKKLGVELET 150

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQP +GE+ L+IT+MLV+S AVD+IV+DSVAAL P+AE+ G++G S  G+QARLMSQ
Sbjct: 151 LLVSQPSSGEEGLQITEMLVKSNAVDVIVVDSVAALVPKAELNGEIGASHVGLQARLMSQ 210

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKLT  IS+SK I++FINQ+R K+GVMFGSPETT GG ALKFY S R+D+RR+G +KD
Sbjct: 211 AMRKLTGVISKSKTIVIFINQIREKVGVMFGSPETTPGGRALKFYCSCRVDVRRIGQLKD 270

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            + + G + R K+VKNK+A PF+  EFD+M+  GIS+ G+++DL ++A IV +SGAWF +
Sbjct: 271 GEDVVGQRVRCKIVKNKVAPPFRIAEFDMMHSNGISYEGDILDLAIEAKIVARSGAWFRY 330

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343
              +LGQG+E ++ FL EN  + E ++  +   AG   + L 
Sbjct: 331 GDIQLGQGKEKARAFLMENPAMTEELKQKVLIEAGHGGEKLF 372


>gi|52630829|gb|AAU84882.1| RecA [Burkholderia ubonensis]
          Length = 248

 Score =  391 bits (1004), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/247 (75%), Positives = 220/247 (89%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AE
Sbjct: 61  AEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           IEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNA
Sbjct: 121 IEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNA 180

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LKFYSSVRLDIR++GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+
Sbjct: 181 LKFYSSVRLDIRQIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEI 240

Query: 283 IDLGVKA 289
           IDLGV+A
Sbjct: 241 IDLGVQA 247


>gi|215271630|emb|CAR57848.1| recombination-repair protein [Vibrio harveyi]
 gi|215271632|emb|CAR57849.1| recombination-repair protein [Vibrio harveyi]
 gi|215271634|emb|CAR57850.1| recombination-repair protein [Vibrio harveyi]
 gi|215271636|emb|CAR57851.1| recombination-repair protein [Vibrio harveyi]
          Length = 270

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 182/271 (67%), Positives = 229/271 (84%), Gaps = 2/271 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 2   KGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D+
Sbjct: 60  AAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG
Sbjct: 120 MVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+   
Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANT 239

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
            IMYG+G +  GELIDLGVK  +V+K+GAW+
Sbjct: 240 QIMYGQGFNREGELIDLGVKHKLVEKAGAWY 270


>gi|161507192|ref|YP_001577146.1| recombinase A [Lactobacillus helveticus DPC 4571]
 gi|160348181|gb|ABX26855.1| Recombination protein [Lactobacillus helveticus DPC 4571]
          Length = 365

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/353 (53%), Positives = 269/353 (76%), Gaps = 13/353 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K  AL+AAL +I++ +GKGA+M++G +      I  V +GSL LD A+G+GG+P+GRI+
Sbjct: 5   EKKAALDAALKKIEKNFGKGAVMRMGEKADT--QISTVPTGSLALDAAIGVGGYPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQP+TG
Sbjct: 63  EVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 123 EEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++K I +FINQ+R K+G+MFG+PETT GG ALKFYS++RL++RR   IK    + GN+ 
Sbjct: 183 SKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDVIGNRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+     I+DK+G+W+S+K  R+GQGR
Sbjct: 243 KIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKSDRIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           EN+K +L ++ +I ++I+  +RQ  G           I+ K  AD++D + ++
Sbjct: 303 ENAKKYLEDHPDIYQDIQQQVRQAYG-----------IDKKSVADREDPEKIK 344


>gi|309389279|gb|ADO77159.1| RecA protein [Halanaerobium praevalens DSM 2228]
          Length = 348

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/331 (60%), Positives = 263/331 (79%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   DK KAL+ A+ +I++ +GKG+IM+LG    +   +E + +G+L LD+ALGIGG PK
Sbjct: 1   MATSDKEKALDKAVKRIEKQFGKGSIMRLGDSQKL--NVEAIPTGALPLDLALGIGGIPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E+YG ESSGKTTLALH IA++QK  G  AF+DAEHALD  YA+ LGV++ NLLISQ
Sbjct: 59  GRIIELYGNESSGKTTLALHIIAEAQKLDGIAAFIDAEHALDPKYAKNLGVNIDNLLISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+GE+ALEI + LVRS AVD++VIDSVAAL P+AE+EGDMG+S  G+QARLMSQA+RKL
Sbjct: 119 PDSGEEALEIGEALVRSNAVDLVVIDSVAALVPKAELEGDMGDSHMGLQARLMSQAMRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + +IS+SK  ++FINQ+R KIGVMFG+PETT GG ALKFYSSVR+++RR  +IKD D + 
Sbjct: 179 SGAISKSKAAVIFINQIREKIGVMFGNPETTPGGRALKFYSSVRIEMRRSQTIKDGDKLI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G+  +VKVVKNK+A+PF+  +FDIMYG GIS  G +IDLG +  IVD++G+W+S+   RL
Sbjct: 239 GSTAKVKVVKNKVAAPFRNCQFDIMYGTGISQSGCIIDLGEETGIVDRAGSWYSYGDVRL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQGR+NSK FL++N EI E I+  +R   GL
Sbjct: 299 GQGRQNSKEFLQDNPEIMEEIDDKIRIKIGL 329


>gi|166364348|ref|YP_001656621.1| recombinase A [Microcystis aeruginosa NIES-843]
 gi|166086721|dbj|BAG01429.1| double-stranded DNA binding protein [Microcystis aeruginosa
           NIES-843]
          Length = 355

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/326 (58%), Positives = 250/326 (76%), Gaps = 4/326 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  D+ KAL   L+QI+R +GKG+IM+LG    +   +E V SG+L LD+ALG GG PKG
Sbjct: 6   NNSDRDKALGLVLNQIERNFGKGSIMRLGDATRMR--VETVPSGALTLDMALG-GGLPKG 62

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTLALH IA+ QK GG  AFVDAEHALD  Y+  LGVD+ NLL++QP
Sbjct: 63  RIVEIYGPESSGKTTLALHAIAEVQKAGGVAAFVDAEHALDPTYSEDLGVDINNLLVAQP 122

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGE ALEI D LVRS AVDI+VIDSVAAL PRAEIEG+MG++  G+QARLMS+ALRK+ 
Sbjct: 123 DTGEAALEIVDQLVRSSAVDIVVIDSVAALVPRAEIEGEMGDNQVGLQARLMSKALRKIA 182

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSIT 246
            +I +S C+++F+NQ+R KIGV +G+PE TTGG ALKFY+SVRLDIRR+ ++K   +   
Sbjct: 183 GNIGKSGCVVIFLNQLRQKIGVTYGNPEVTTGGTALKFYASVRLDIRRIQTLKKGTEGEY 242

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G + +VKV KNK+A PF+  EFDI++G+GIS  G ++D+  + ++V + GAW+S+ G+ +
Sbjct: 243 GIRAKVKVAKNKVAPPFRIAEFDIIFGKGISQVGCMLDIAEQTNVVTRKGAWYSYNGENI 302

Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332
            QGR+N+  +L E  E+A  IE LLR
Sbjct: 303 AQGRDNAVKYLEERPEVAAEIEKLLR 328


>gi|223635949|emb|CAQ03776.1| recombination-repair protein [Enterovibrio norvegicus]
          Length = 253

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 183/242 (75%), Positives = 214/242 (88%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  +A++QK G TCAF+DAE
Sbjct: 12  IETVSTGSLSLDIALGAGGLPFGRIVEIYGPESSGKTTLTLQVVAEAQKAGKTCAFIDAE 71

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVD+ NLL+SQPDTGEQALEI D L RSGAVD+I+IDSVAALTP+AEIE
Sbjct: 72  HALDPVYARKLGVDIDNLLVSQPDTGEQALEIADALTRSGAVDVIIIDSVAALTPKAEIE 131

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT++I  S  +++FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 132 GEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIGVMFGNPETTTGGNALK 191

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR+GSIK+ D I GN TRVKVVKNK+A+PFKQ EF IMYGEGI+ +GELID
Sbjct: 192 FYASVRLDIRRIGSIKEGDEIVGNDTRVKVVKNKIAAPFKQAEFQIMYGEGINLYGELID 251

Query: 285 LG 286
           LG
Sbjct: 252 LG 253


>gi|290795097|gb|ADD64564.1| RecA recombinase [Vibrio splendidus]
          Length = 270

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/271 (68%), Positives = 230/271 (84%), Gaps = 2/271 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 2   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            I+ +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 60  LISAAQKVGKTCAFIDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 120 DVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           E  I+YG+G +  GELIDLGVK  +V+K+GA
Sbjct: 240 ETQILYGKGFNREGELIDLGVKNKLVEKAGA 270


>gi|15618671|ref|NP_224957.1| recombinase A [Chlamydophila pneumoniae CWL029]
 gi|15836295|ref|NP_300819.1| recombinase A [Chlamydophila pneumoniae J138]
 gi|16752279|ref|NP_445647.1| recombinase A [Chlamydophila pneumoniae AR39]
 gi|6225923|sp|Q9Z7E4|RECA_CHLPN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|4377070|gb|AAD18900.1| RecA recombination protein [Chlamydophila pneumoniae CWL029]
 gi|7190022|gb|AAF38877.1| recA protein [Chlamydophila pneumoniae AR39]
 gi|8979135|dbj|BAA98970.1| RecA recombination protein [Chlamydophila pneumoniae J138]
 gi|269302551|gb|ACZ32651.1| protein RecA [Chlamydophila pneumoniae LPCoLN]
          Length = 353

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/323 (58%), Positives = 253/323 (78%), Gaps = 2/323 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN+ D+ KALEAA++ I++ +G G+IM LG   +  E I  + +G+L LD+ALGI G PK
Sbjct: 1   MNLPDRKKALEAAVAYIEKQFGAGSIMSLGRHSATHE-ISTIKTGALSLDLALGIHGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++EI+GPESSGKTTLA H +A +QK GG  A++DAEHALD  YA  +GV++ +L+ISQ
Sbjct: 60  GRVIEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPSYASLIGVNIDDLMISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GE AL I ++L RSGAVD+IVIDSVAAL P++E+EGD+G+   G+QAR+MSQALRKL
Sbjct: 120 PDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGDIGDVHVGLQARMMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SI 245
           T+++SRS+   VFINQ+R KIGV FG+PETTTGG ALKFYSS+RLDIRR+GSIK  D S 
Sbjct: 180 TATLSRSQTCAVFINQIREKIGVSFGNPETTTGGRALKFYSSIRLDIRRIGSIKGSDNSD 239

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+ +VKV KNK+A PF+  EFDI++ EGIS  G ++DL V+ +I++K G+WF+++ ++
Sbjct: 240 IGNRIKVKVAKNKLAPPFRIAEFDILFNEGISSAGCILDLAVEYNIIEKKGSWFNYQEKK 299

Query: 306 LGQGRENSKIFLRENIEIAENIE 328
           LGQGRE  +  L+ N ++ E IE
Sbjct: 300 LGQGREFVREELKRNRKLFEEIE 322


>gi|315185609|gb|EFU19377.1| RecA protein [Spirochaeta thermophila DSM 6578]
          Length = 375

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/324 (60%), Positives = 262/324 (80%), Gaps = 2/324 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALEAA  QI++ +GKGA+M+LGS+  + EG++V+ SGS+ LD ALG+GG+PKGRI+
Sbjct: 13  EKLKALEAAQLQIEKQFGKGALMRLGSRSHV-EGLDVIPSGSILLDYALGVGGYPKGRII 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA++QK GG  AFVDAEHALD  YA+ LGV++  L +SQP +G
Sbjct: 72  EIYGPESSGKTTIALHAIAEAQKRGGIAAFVDAEHALDPTYAKNLGVNIDELWVSQPSSG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ALEIT+ LVRSGA+DIIV+DSVAALTP+AEI+GDMG++  G+QARLMSQALRKLT ++
Sbjct: 132 EEALEITESLVRSGAIDIIVVDSVAALTPQAEIDGDMGDAHVGLQARLMSQALRKLTGAV 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSITGNQ 249
           ++S   L+FINQ+RMKIGVMFG+PETTTGGNALKFY+++RLD+RR  +I +  D+  G +
Sbjct: 192 AKSGTCLIFINQIRMKIGVMFGNPETTTGGNALKFYATIRLDVRRTETISEGADNAVGTK 251

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            RV+VVKNK+A PFK+VE ++ +G+G+S    L+D  V+  ++ KSG+W+S   +R+GQG
Sbjct: 252 VRVRVVKNKVAPPFKKVELEMEFGKGVSSIASLLDAAVEHGLIQKSGSWYSIGDERIGQG 311

Query: 310 RENSKIFLRENIEIAENIESLLRQ 333
           RE  K +L E+ E A  IE  LR+
Sbjct: 312 RETIKQYLVEHPEEASRIEEELRK 335


>gi|307718788|ref|YP_003874320.1| DNA integration/recombination/invertion protein [Spirochaeta
           thermophila DSM 6192]
 gi|306532513|gb|ADN02047.1| DNA integration/recombination/invertion protein [Spirochaeta
           thermophila DSM 6192]
          Length = 375

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/324 (60%), Positives = 262/324 (80%), Gaps = 2/324 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALEAA  QI++ +GKGA+M+LGS+  + EG++V+ SGS+ LD ALG+GG+PKGRI+
Sbjct: 13  EKLKALEAAQLQIEKQFGKGALMRLGSRSHV-EGLDVIPSGSILLDYALGVGGYPKGRII 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA++QK GG  AFVDAEHALD  YA+ LGV++  L +SQP +G
Sbjct: 72  EIYGPESSGKTTIALHAIAEAQKRGGIAAFVDAEHALDPTYAKNLGVNIDELWVSQPSSG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ALEIT+ LVRSGA+DIIV+DSVAALTP+AEI+GDMG++  G+QARLMSQALRKLT ++
Sbjct: 132 EEALEITESLVRSGAIDIIVVDSVAALTPQAEIDGDMGDAHVGLQARLMSQALRKLTGAV 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSITGNQ 249
           ++S   L+FINQ+RMKIGVMFG+PETTTGGNALKFY+++RLD+RR  +I +  D+  G +
Sbjct: 192 AKSGTCLIFINQIRMKIGVMFGNPETTTGGNALKFYATIRLDVRRTETISEGADNAVGTK 251

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            RV+VVKNK+A PFK+VE ++ +G+G+S    L+D  V+  ++ KSG+W+S   +R+GQG
Sbjct: 252 VRVRVVKNKVAPPFKKVELEMEFGKGVSSIASLLDAAVEHGLIQKSGSWYSIGDERIGQG 311

Query: 310 RENSKIFLRENIEIAENIESLLRQ 333
           RE  K +L E+ E A  IE  LR+
Sbjct: 312 RETIKQYLVEHPEEASRIEEELRK 335


>gi|296122799|ref|YP_003630577.1| recA protein [Planctomyces limnophilus DSM 3776]
 gi|296015139|gb|ADG68378.1| recA protein [Planctomyces limnophilus DSM 3776]
          Length = 352

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 183/316 (57%), Positives = 253/316 (80%), Gaps = 3/316 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           K L+  L QI++ +G+G+IM+L   G   +GI    SG+L LD+ALG  GFP+GRIVEI+
Sbjct: 21  KLLDNTLGQIEKAFGRGSIMKLTDAGMDVDGI---GSGALSLDLALGGKGFPRGRIVEIF 77

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTLALH IA SQ+ GG  AF+DAEHALD  +A+KLGV+L+ LL+SQP TGE+A
Sbjct: 78  GPESSGKTTLALHCIANSQREGGIAAFIDAEHALDPAWAKKLGVNLEELLVSQPSTGEEA 137

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           L+I +ML++S AVD++VIDSVAAL P+AE+EG++G+S  G+QAR+MSQA+RKLT  IS++
Sbjct: 138 LQIAEMLIKSNAVDVVVIDSVAALVPKAELEGEIGDSHVGLQARMMSQAMRKLTGVISKA 197

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
           K +++FINQ+R KIGVMFGSPETT GG ALKFY SVR D+RR+ ++K+ D  TG + +VK
Sbjct: 198 KTVVIFINQIREKIGVMFGSPETTPGGRALKFYCSVRADVRRLATLKEGDVTTGMRMKVK 257

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           +VKNK+A PF+  EFD++  +GISF G+L+DLGV A +V++SG+WF++   +LGQGR+ +
Sbjct: 258 IVKNKVAPPFRVAEFDMLSSQGISFSGDLLDLGVAARLVERSGSWFTYGEVKLGQGRDKA 317

Query: 314 KIFLRENIEIAENIES 329
           +I+L E+ E+   I++
Sbjct: 318 RIYLEEHPELMAEIKA 333


>gi|58415682|emb|CAH57255.1| recA protein [Aliivibrio wodanis]
 gi|58415684|emb|CAH57256.1| recA protein [Aliivibrio wodanis]
 gi|148536410|gb|ABQ85757.1| RecA [Aliivibrio wodanis]
          Length = 265

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/267 (69%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IAQ
Sbjct: 1   SIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEAIAQ 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD IYA+KLGVD+  LL SQPDTGEQALEI D L RSGAVD+IV
Sbjct: 59  AQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLCSQPDTGEQALEIVDALARSGAVDVIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G++K+ D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GELIDLGVK  +VDK+GA
Sbjct: 239 LYGKGFNREGELIDLGVKHKLVDKAGA 265


>gi|52630787|gb|AAU84861.1| RecA [Burkholderia caribensis]
          Length = 247

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 183/245 (74%), Positives = 220/245 (89%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAE
Sbjct: 2   IQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKIGGTAAFIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA+KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIE
Sbjct: 62  HALDIQYAQKLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 122 GEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALK 181

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+ID
Sbjct: 182 FYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRETIFDILYGEGISRQGEIID 241

Query: 285 LGVKA 289
           LGV+A
Sbjct: 242 LGVQA 246


>gi|112148589|gb|ABI13578.1| recombinase A [Lactobacillus helveticus CNRZ32]
 gi|328461861|gb|EGF34083.1| recombinase A [Lactobacillus helveticus MTCC 5463]
          Length = 365

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/353 (53%), Positives = 269/353 (76%), Gaps = 13/353 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K  AL+AAL +I++ +GKGA+M++G +      I  V +GSL LD A+G+GG+P+GRI+
Sbjct: 5   EKKAALDAALKKIEKNFGKGAVMRMGEKADT--QISTVPTGSLALDAAIGVGGYPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQP+TG
Sbjct: 63  EVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 123 EEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++K I +FINQ+R K+G+MFG+PETT GG ALKFYS++RL++RR   IK    + GN+ 
Sbjct: 183 SKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDMIGNRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+     I+DK+G+W+S+K  R+GQGR
Sbjct: 243 KIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKSDRIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           EN+K +L ++ +I ++I+  +RQ  G           I+ K  AD++D + ++
Sbjct: 303 ENAKKYLEDHPDIYQDIQQQVRQAYG-----------IDEKSVADREDPEKIK 344


>gi|307297691|ref|ZP_07577497.1| recA protein [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916951|gb|EFN47333.1| recA protein [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 349

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/332 (56%), Positives = 255/332 (76%), Gaps = 6/332 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK  ALE A+  I++ +GKG++M +G +    + IEV+ +GSL +DIAL +GG+P+GR+V
Sbjct: 5   DKKNALERAIKDIEKQFGKGSVMLMGDKEE-HKSIEVIPTGSLAVDIALTVGGYPRGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYG ESSGKTT+ALH IA+ QK GG  AF+DAEHALD  YA+ LGVD+ NLLISQPD G
Sbjct: 64  EIYGAESSGKTTIALHAIAEVQKRGGIAAFIDAEHALDIHYAQNLGVDVDNLLISQPDYG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL+I D L+RS AVD+IV+DSVAAL PR EIEG MGE   G+QARLMSQALRK++ ++
Sbjct: 124 EQALDIVDGLIRSNAVDLIVVDSVAALVPRTEIEGAMGELQVGLQARLMSQALRKISGNV 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+SKCI++FINQ RMKIGV++G+PETTTGG ALKFYSSVRL+I+R  +I++ +++ GN+T
Sbjct: 184 SKSKCIVIFINQTRMKIGVVYGNPETTTGGVALKFYSSVRLEIKRGSAIREGNTVLGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ-----R 305
            +KVVKNK+A PF++ + DI+YG+GI    EL +L +  +++++ GAW+++  +      
Sbjct: 244 TIKVVKNKVAPPFREAKVDIIYGQGIEHANELFNLALSENMIERKGAWYTYISEDNNEVS 303

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           LGQG+ N   F++EN E+   IE+ LR    L
Sbjct: 304 LGQGKSNGVEFMKENPELILEIENRLRAKYNL 335


>gi|260102484|ref|ZP_05752721.1| recombination protein A [Lactobacillus helveticus DSM 20075]
 gi|260083721|gb|EEW67841.1| recombination protein A [Lactobacillus helveticus DSM 20075]
          Length = 365

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/353 (53%), Positives = 269/353 (76%), Gaps = 13/353 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K  AL+AAL +I++ +GKGA+M++G +      I  V +GSL LD A+G+GG+P+GRI+
Sbjct: 5   EKKAALDAALKKIEKNFGKGAVMRMGEKADT--QISTVPTGSLALDAAIGVGGYPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQP+TG
Sbjct: 63  EVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 123 EEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++K I +FINQ+R K+G+MFG+PETT GG ALKFYS++RL++RR   IK    + GN+ 
Sbjct: 183 SKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDMIGNRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+     I+DK+G+W+S+K  R+GQGR
Sbjct: 243 KIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKSDRIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           EN+K +L ++ +I ++I+  +RQ  G           I+ K  AD++D + ++
Sbjct: 303 ENAKKYLEDHPDIYQDIQQQVRQAYG-----------IDKKSVADREDPEKIK 344


>gi|315037892|ref|YP_004031460.1| recombinase A [Lactobacillus amylovorus GRL 1112]
 gi|312276025|gb|ADQ58665.1| recombinase A [Lactobacillus amylovorus GRL 1112]
 gi|327183184|gb|AEA31631.1| recombinase A [Lactobacillus amylovorus GRL 1118]
          Length = 364

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/354 (53%), Positives = 271/354 (76%), Gaps = 6/354 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K  AL+AAL +I++ +GKGA+M++G +      I  V +GSL LD A+G+GG+P+GRI+
Sbjct: 5   EKQAALDAALKKIEKNFGKGAVMRMGEKADT--QISTVPTGSLALDAAIGVGGYPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQP+TG
Sbjct: 63  EIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 123 EEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK    + GN+ 
Sbjct: 183 SKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDVLGNRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+     I+DK+G+W+S+K  R+GQGR
Sbjct: 243 KIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKNDRIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL----VADSLLQEPAINTKDDADKDDTD 360
           EN+K +L ++ +I ++I+  +R+  G+    +AD    E      ++A ++++D
Sbjct: 303 ENAKKYLEDHPDIYQDIQEQVRKAYGIDEKSIADRENPEKIKEKHEEAQQEESD 356


>gi|224538961|ref|ZP_03679500.1| hypothetical protein BACCELL_03858 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519428|gb|EEF88533.1| hypothetical protein BACCELL_03858 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 297

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/289 (65%), Positives = 242/289 (83%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +EV+ SGS+GL++ALG+GG+P+GRI+EIYGPESSGKTTLA+H IA++QK GG  AF+D
Sbjct: 1   EQVEVIPSGSIGLNVALGVGGYPRGRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHA D  YA KLGVD+ NLLISQPD GEQALEI + L+RS A+DIIV+DSVAALTP+AE
Sbjct: 61  AEHAFDRFYAAKLGVDVDNLLISQPDNGEQALEIAEQLIRSSAIDIIVVDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           IEGDMG++  G+QARLMSQALRKLT+++S+++   +FINQ+R KIGVMFG+PETTTGGNA
Sbjct: 121 IEGDMGDNKVGLQARLMSQALRKLTAAVSKTRTTCIFINQLREKIGVMFGNPETTTGGNA 180

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LKFY+SVRLDIR   +IK+ D + G QT+VKVVKNK+A PF++ EFDIM+GEGIS  GE+
Sbjct: 181 LKFYASVRLDIRGSQAIKNGDEVLGKQTKVKVVKNKVAPPFRRAEFDIMFGEGISRAGEI 240

Query: 283 IDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLL 331
           IDLG +  IV KSG+WFS+   ++ QGR+ +K  + +N E+AE +E L+
Sbjct: 241 IDLGAELGIVKKSGSWFSYNDTKIAQGRDAAKQVIADNPELAEELEGLI 289


>gi|223635951|emb|CAQ03777.1| recombination-repair protein [Grimontia hollisae]
          Length = 254

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/256 (72%), Positives = 221/256 (86%), Gaps = 2/256 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   IE VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA+
Sbjct: 1   SIMRLGDDRTM--DIETVSTGSLSLDIALGAGGLPYGRIVEIYGPESSGKTTLTLQVIAE 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD IYARKL VD+ NLL+SQPDTGEQALEI D L RSGAVD+I+
Sbjct: 59  AQKQGKTCAFIDAEHALDPIYARKLNVDIDNLLVSQPDTGEQALEIADALTRSGAVDVII 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT++I  S  +++FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D + GN TRVKVVKNK+A+PFKQ EF I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEVVGNDTRVKVVKNKIAAPFKQAEFQI 238

Query: 271 MYGEGISFFGELIDLG 286
           +YGEGI+ +GELIDLG
Sbjct: 239 LYGEGINLYGELIDLG 254


>gi|319790642|ref|YP_004152275.1| recA protein [Thermovibrio ammonificans HB-1]
 gi|317115144|gb|ADU97634.1| recA protein [Thermovibrio ammonificans HB-1]
          Length = 351

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/329 (57%), Positives = 258/329 (78%), Gaps = 5/329 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K LE+A+ +I++ +G+GAIM+LG   +  E +  +S+GS+ +D   GIGG P+GRI 
Sbjct: 15  EKLKVLESAIKRIKKEFGEGAIMRLGE--TPVERVPAISTGSISVDRITGIGGVPRGRIT 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPE+SGKTTLALH I+ +QK GG  AF+DAEH  D  YAR LG++L+ LL+SQPD+G
Sbjct: 73  EIFGPEASGKTTLALHVISNAQKEGGVAAFIDAEHTFDPTYARNLGINLEELLLSQPDSG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVD+IVIDSVAALTP AE++GDMG+S  G+QARLMSQALRKLT+++
Sbjct: 133 EQALEIAETLVRSGAVDVIVIDSVAALTPEAELKGDMGDSHVGLQARLMSQALRKLTAAV 192

Query: 191 SRSKCILVFINQMRMKIGVM-FGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDK-DSITG 247
           S+SKC L+FINQ+R KIG+M +G P ETTTGG ALKFY+S+R+DIR +G IK + D   G
Sbjct: 193 SKSKCALIFINQVREKIGMMGYGGPQETTTGGRALKFYASMRMDIRNIGQIKGRNDERIG 252

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           ++ +VK+VKNK+A PF++   +I YGEGIS   +L++LG +  I+ +SG+WFSF   +LG
Sbjct: 253 HKAKVKIVKNKLAPPFREAVVEIYYGEGISKEADLLNLGEELGIIKRSGSWFSFDNVKLG 312

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAG 336
           QG+EN++ FL+EN EIA+ IE  + +  G
Sbjct: 313 QGKENARQFLKENPEIAQEIEKRILEALG 341


>gi|60492139|emb|CAH06902.1| recombinase A (recA) [Bacteroides fragilis NCTC 9343]
          Length = 318

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 193/312 (61%), Positives = 252/312 (80%), Gaps = 2/312 (0%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           + +I++ +GKG+IM++G +       EV+ +GS+ L+ ALG+GG+P+GRI+EIYGPESSG
Sbjct: 1   MDKIEKSFGKGSIMKMGEEVVEQV--EVIPTGSIALNAALGVGGYPRGRIIEIYGPESSG 58

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD GEQALEI + 
Sbjct: 59  KTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLFISQPDNGEQALEIAEQ 118

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           L+RS A+DIIV+DSVAALTP+AEIEGDMG++  G+QARLMSQALRKLTS++S+++   +F
Sbjct: 119 LIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTSAVSKTRTTCIF 178

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           INQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR    IKD + + G QT+VKVVKNK+
Sbjct: 179 INQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQQIKDGEEVIGKQTKVKVVKNKV 238

Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
           A PF++ EFDIM+GEGIS  GE+IDLG    I+ KSG+W+S+   +LGQGR+ +K  + +
Sbjct: 239 APPFRKAEFDIMFGEGISHSGEIIDLGADLGIIKKSGSWYSYNDTKLGQGRDAAKQCIAD 298

Query: 320 NIEIAENIESLL 331
           N E+AE +E L+
Sbjct: 299 NPELAEELEGLI 310


>gi|306450659|gb|ADM88582.1| RecA [Propionibacterium acnes]
          Length = 280

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/277 (67%), Positives = 229/277 (82%), Gaps = 2/277 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL  AL QI++ +GKG+IM+LG Q ++   I  + +GS+ LD+ALG+GG P+GRIV
Sbjct: 6   DREKALATALQQIEKQHGKGSIMRLGEQETV--KIAAIPTGSVALDVALGVGGLPRGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA +Q  GG CAF+DAEHALD  YARKLGVD  +LL+SQPD G
Sbjct: 64  EIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPEYARKLGVDTDSLLVSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGA+++IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADTLVRSGALELIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + +    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RRV ++KD   + GN+T
Sbjct: 184 NAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRVETLKDGSEMVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           RVKV KNK+A PFKQ EFDI+YG+GIS  G LID+GV
Sbjct: 244 RVKVAKNKVAPPFKQAEFDILYGQGISREGSLIDMGV 280


>gi|110264719|gb|ABG56935.1| recA protein [Vibrio harveyi]
          Length = 274

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 184/276 (66%), Positives = 231/276 (83%), Gaps = 2/276 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGP
Sbjct: 1   LAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 ICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASI 291
           KNK+A+PFK+    IMYG+G +  GELIDLGVK  +
Sbjct: 239 KNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKL 274


>gi|58415347|emb|CAH57088.1| recA protein [Photobacterium rosenbergii]
 gi|58415349|emb|CAH57089.1| recA protein [Photobacterium rosenbergii]
 gi|58415351|emb|CAH57090.1| recA protein [Photobacterium rosenbergii]
 gi|58415353|emb|CAH57091.1| recA protein [Photobacterium rosenbergii]
          Length = 265

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/267 (69%), Positives = 227/267 (85%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD IYARKLGVD+  LL+SQPDTGEQALEI D L RSGAVDI+V
Sbjct: 59  AQKQGKTCAFIDAEHALDPIYARKLGVDIDQLLVSQPDTGEQALEIADALARSGAVDILV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RK+T ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKITGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G + +GELIDLGVK  +V+K+GA
Sbjct: 239 LYGKGFNRYGELIDLGVKNKLVEKAGA 265


>gi|170516899|gb|ACB15385.1| RecA [Bifidobacterium longum]
          Length = 267

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 180/266 (67%), Positives = 224/266 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +EV+ +GSL LD+ALGIGG PKGRIVEIYGPESSGKTTLALH +A +QK GG  A++DAE
Sbjct: 2   VEVIPTGSLALDMALGIGGLPKGRIVEIYGPESSGKTTLALHVVANAQKKGGVAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YARKLGVD  +L++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIE
Sbjct: 62  HALDPAYARKLGVDTDSLIVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRK+T +++++    +FINQ+R KIGV FG+PETTTGG ALK
Sbjct: 122 GEMGDSHVGLQARLMSQALRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALK 181

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR+ ++K+ D   GN+TRVKVVKNKMA PFK  EFD++YGEGIS  G +ID
Sbjct: 182 FYASVRLDIRRIQTLKNGDEAVGNRTRVKVVKNKMAPPFKSAEFDMLYGEGISREGSVID 241

Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGR 310
           +  +  +V KSG+WF+++G +LGQGR
Sbjct: 242 MAQQVGVVKKSGSWFTYEGDQLGQGR 267


>gi|29840750|ref|NP_829856.1| recombinase A [Chlamydophila caviae GPIC]
 gi|33301490|sp|Q821E6|RECA_CHLCV RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|29835100|gb|AAP05734.1| recA protein [Chlamydophila caviae GPIC]
          Length = 350

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 184/323 (56%), Positives = 254/323 (78%), Gaps = 2/323 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN+ D+ KALEAA++ I++ +G G+IM LG   +  E I  + +G+L LD+ALGIGG PK
Sbjct: 1   MNVPDRKKALEAAIAYIEKQFGAGSIMSLGKHSATHE-ISTIKTGALSLDLALGIGGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEI+GPESSGKTTLA H +A +QK GG  A++DAEHALD  YA  +G ++ +L+ISQ
Sbjct: 60  GRIVEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPGYASLIGANINDLMISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GE AL I ++L RSGAVD+IVIDSVAAL P++E+EGD+G+   G+QAR+MSQALRKL
Sbjct: 120 PDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGDIGDVHVGLQARMMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI- 245
           T++++RS+   +FINQ+R KIGV FG+PETTTGG ALKFYSS+R+DIRR+G+IK  +S  
Sbjct: 180 TATLARSQTCAIFINQIREKIGVSFGNPETTTGGRALKFYSSIRMDIRRIGAIKGNESFD 239

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+ +VKV KNK+A PF+  EFDI++ EGIS  G ++DL V+ +IV+K G+WF+++ ++
Sbjct: 240 LGNRIKVKVAKNKLAPPFRTAEFDILFNEGISSAGCILDLAVEHNIVEKKGSWFNYQDRK 299

Query: 306 LGQGRENSKIFLRENIEIAENIE 328
           LGQGRE  +  L++N ++ + +E
Sbjct: 300 LGQGREAVREELKKNKKLFDELE 322


>gi|78188222|ref|YP_378560.1| recombinase A [Chlorobium chlorochromatii CaD3]
 gi|123770898|sp|Q3AU08|RECA_CHLCH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|78170421|gb|ABB27517.1| RecA DNA recombination protein [Chlorobium chlorochromatii CaD3]
          Length = 353

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/322 (61%), Positives = 257/322 (79%), Gaps = 1/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K K L  A+  +++ +GKG IM++G  GS    ++ +S+GS+ LD ALG+GG P+GR+ E
Sbjct: 19  KLKQLNLAVDALEKQFGKGTIMRMGD-GSAGLTVQAISTGSMALDFALGVGGLPRGRVTE 77

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH IA++QK GG  A VDAEHA D  YARKLGVD+  LLISQP++GE
Sbjct: 78  IYGPESSGKTTLALHVIAEAQKEGGITAIVDAEHAFDPSYARKLGVDINALLISQPESGE 137

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL I + LVRSGAVD++V+DSVAAL P+AE+EG+MG+S  G+QARLMSQALRKLT +IS
Sbjct: 138 QALSIVETLVRSGAVDVVVVDSVAALVPQAELEGEMGDSSMGLQARLMSQALRKLTGAIS 197

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S  + +FINQ+R KIGVM+GSPETTTGG ALKFYSSVRLDIR++  +KD D +TG++TR
Sbjct: 198 KSSTVCIFINQLRDKIGVMYGSPETTTGGKALKFYSSVRLDIRKIAQLKDGDELTGSRTR 257

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PFK  EFDI+YGEGIS  GELIDLGV+  ++ K+G+WFS+  ++LGQGRE
Sbjct: 258 VKVVKNKVAPPFKMAEFDILYGEGISALGELIDLGVEFGVIKKAGSWFSYGTEKLGQGRE 317

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
           + K  LRE+  + + I   +++
Sbjct: 318 SVKKILREDPVLYQKIHMQVKE 339


>gi|325295642|ref|YP_004282156.1| Protein recA [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325066090|gb|ADY74097.1| Protein recA [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 334

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 193/322 (59%), Positives = 254/322 (78%), Gaps = 5/322 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ + LE AL +I++ +G+G++M LG + +  E I  +S+GS+ +D A GIGG P+GRI 
Sbjct: 4   ERRRVLEDALRRIKKEFGEGSVMFLGEKPA--EEIPAISTGSISIDRATGIGGIPRGRIT 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH IA  QK GG  AF+DAEHALD  YARKLG++L+ LL+SQPD+G
Sbjct: 62  EIYGPESSGKTTLALHVIANVQKEGGIAAFIDAEHALDPTYARKLGINLEELLVSQPDSG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVD+IV+DSVAAL P AEI+GDMG+S  G+QARLMSQALRKLT++ 
Sbjct: 122 EQALEIAETLVRSGAVDVIVVDSVAALVPEAEIKGDMGDSHVGLQARLMSQALRKLTAAT 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDK-DSITG 247
           SRS C L+FINQ+R KIG+M +G P ETTTGG ALKFY+S+R+DIR +G IK K D   G
Sbjct: 182 SRSNCALIFINQVREKIGMMGYGGPQETTTGGRALKFYASMRMDIRNIGQIKGKGDERIG 241

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           ++ ++K+VKNK+A PF++   +I YGEGIS   +L++LG +   V KSG+W+S+   RLG
Sbjct: 242 HKAKIKIVKNKLAPPFREAIVEIYYGEGISKEADLLNLGEELGFVKKSGSWYSYGDIRLG 301

Query: 308 QGRENSKIFLRENIEIAENIES 329
           QG+EN++IFL+EN EIA  +E+
Sbjct: 302 QGKENARIFLKENPEIAVELEA 323


>gi|262038532|ref|ZP_06011901.1| protein RecA [Leptotrichia goodfellowii F0264]
 gi|261747401|gb|EEY34871.1| protein RecA [Leptotrichia goodfellowii F0264]
          Length = 382

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/321 (57%), Positives = 252/321 (78%), Gaps = 5/321 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K + L  AL+QIQ+ +G+G+IM+LG    +   ++ +S+GS+ LD+ALGIGG P+GRI+
Sbjct: 18  EKERVLNLALTQIQKEFGEGSIMKLGENQKM--NVKSISTGSINLDMALGIGGVPRGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYG ESSGKTTLALH IA++QK GG  AF+DAEHALD +YA+ LGV++  LLISQPDTG
Sbjct: 76  EIYGAESSGKTTLALHVIAEAQKEGGVAAFIDAEHALDPVYAKALGVNIDELLISQPDTG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IV+DSVAAL P+AEIEG+MG+   G+QARLMS+ALRKLT++I
Sbjct: 136 EQALEIADMLVRSGAMDVIVVDSVAALVPKAEIEGEMGDQQMGLQARLMSKALRKLTANI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSP---ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           S+S  +++FINQ+R KIG    +P    TT+GG ALKF+S+VR++++RVGS+K  + + G
Sbjct: 196 SKSSTVMIFINQIREKIGGFSFTPGPQTTTSGGRALKFFSTVRMEVKRVGSVKQGEEVIG 255

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+  VKV KNK+A PFK+  F++MYG GIS  GE++D  ++  +  KSGAWFS+  +RLG
Sbjct: 256 NEVLVKVTKNKVAPPFKEARFNVMYGMGISRIGEILDAALELGVASKSGAWFSYGDERLG 315

Query: 308 QGRENSKIFLRENIEIAENIE 328
           QGR N +  L+EN E+ E +E
Sbjct: 316 QGRVNVEKMLQENKELYERME 336


>gi|260656830|gb|ACX47805.1| recombinase A [Vibrio casei]
          Length = 267

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 184/269 (68%), Positives = 229/269 (85%), Gaps = 2/269 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  I
Sbjct: 1   KGSIMKLGDNRTM--DVETISTGSLALDIALGAGGLPMGRIVEVYGPESSGKTTLTLELI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGV++ +LL+SQPDTGEQALEI D L RSGA+D+
Sbjct: 59  AAAQRVGKTCAFIDAEHALDPIYAQKLGVNINDLLVSQPDTGEQALEICDALARSGAIDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG
Sbjct: 119 LVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFGSPETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E 
Sbjct: 179 VMFGSPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAET 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGA 297
            I+YG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 QILYGKGFNREGELIDLGVKNKLVEKAGA 267


>gi|132221|sp|P22841|RECA_BACFR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|143963|gb|AAA22918.1| recA [Bacteroides fragilis]
 gi|301162249|emb|CBW21794.1| recombinase A (recA) [Bacteroides fragilis 638R]
          Length = 318

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 193/312 (61%), Positives = 252/312 (80%), Gaps = 2/312 (0%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           + +I++ +GKG+IM++G +       EV+ +GS+ L+ ALG+GG+P+GRI+EIYGPESSG
Sbjct: 1   MDKIEKSFGKGSIMKMGEEVVEQV--EVIPTGSIALNAALGVGGYPRGRIIEIYGPESSG 58

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD GEQALEI + 
Sbjct: 59  KTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLFISQPDNGEQALEIAEQ 118

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           L+RS A+DIIV+DSVAALTP+AEIEGDMG++  G+QARLMSQALRKLTS++S+++   +F
Sbjct: 119 LIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTSAVSKTRTTCIF 178

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           INQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR    IKD + + G QT+VKVVKNK+
Sbjct: 179 INQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQQIKDGEEVIGKQTKVKVVKNKV 238

Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
           A PF++ EFDIM+GEGIS  GE+IDLG    I+ KSG+W+S+   +LGQGR+ +K  + +
Sbjct: 239 APPFRKAEFDIMFGEGISHSGEIIDLGADLGIIKKSGSWYSYNDTKLGQGRDAAKQCIAD 298

Query: 320 NIEIAENIESLL 331
           N E+AE +E L+
Sbjct: 299 NPELAEELEGLI 310


>gi|132217|sp|P29225|RECA_ACHLA RecName: Full=Protein RecA; AltName: Full=Recombinase A
          Length = 331

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/323 (57%), Positives = 249/323 (77%), Gaps = 2/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K +ALE AL QI++ +GKG+IM+LG        IE + SGS+ LDIALGIGG+P+GRI+E
Sbjct: 6   KQQALELALKQIEKQFGKGSIMKLGDGAD--HSIEAIPSGSIALDIALGIGGYPRGRIIE 63

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTL LH +A +QK GGT AF+DAEHALD  YA+ LGVDL NL++SQPDTGE
Sbjct: 64  VYGPESSGKTTLTLHAMASAQKQGGTVAFIDAEHALDPNYAKALGVDLDNLVLSQPDTGE 123

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL+I + L++SG++D+IVIDSVAAL P AEI GDM  +  G+QAR+MSQA+RK++  IS
Sbjct: 124 QALDIAEALIKSGSIDMIVIDSVAALVPEAEIAGDMSANHVGLQARMMSQAMRKMSGVIS 183

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S  + +FINQ+R K+GVMFG+PETT GG ALKF+SSVRL+IRR  +IK    + G ++ 
Sbjct: 184 KSNVVAIFINQIREKVGVMFGNPETTPGGRALKFFSSVRLEIRRAEAIKQGSEMIGIKSN 243

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVK+K+A P K    DIMYG GIS  GE++DL V+ ++V+KSGAW++   ++LGQGR+
Sbjct: 244 VKVVKSKVAPPLKTASIDIMYGTGISRSGEVLDLSVELNLVNKSGAWYNIGEEKLGQGRD 303

Query: 312 NSKIFLRENIEIAENIESLLRQN 334
           N+K +L +  E+   +E  +R +
Sbjct: 304 NAKQYLEDKPELLNELEKKVRTH 326


>gi|58415548|emb|CAH57188.1| recA protein [Vibrio mediterranei]
 gi|58415550|emb|CAH57189.1| recA protein [Vibrio mediterranei]
 gi|58415552|emb|CAH57190.1| recA protein [Vibrio mediterranei]
 gi|58415554|emb|CAH57191.1| recA protein [Vibrio mediterranei]
 gi|58415556|emb|CAH57192.1| recA protein [Vibrio mediterranei]
 gi|58415558|emb|CAH57193.1| recA protein [Vibrio mediterranei]
 gi|58415644|emb|CAH57236.1| recA protein [Vibrio shilonii AK1]
          Length = 265

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 183/267 (68%), Positives = 228/267 (85%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLECIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD IYA+KLGVD+ +LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQKQGKTCAFIDAEHALDPIYAKKLGVDIDSLLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G + +GELIDLGVK  +V+K+GA
Sbjct: 239 LYGQGFNRYGELIDLGVKHKLVEKAGA 265


>gi|215271642|emb|CAR57854.1| recombination-repair protein [Vibrio campbellii]
 gi|215271644|emb|CAR57855.1| recombination-repair protein [Vibrio campbellii]
 gi|215271646|emb|CAR57856.1| recombination-repair protein [Vibrio campbellii]
 gi|215271648|emb|CAR57857.1| recombination-repair protein [Vibrio campbellii]
 gi|215271674|emb|CAR57870.1| recombination-repair protein [Vibrio rotiferianus]
 gi|215271676|emb|CAR57871.1| recombination-repair protein [Vibrio rotiferianus]
 gi|215271678|emb|CAR57872.1| recombination-repair protein [Vibrio rotiferianus]
 gi|215271680|emb|CAR57873.1| recombination-repair protein [Vibrio rotiferianus]
          Length = 268

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 182/270 (67%), Positives = 228/270 (84%), Gaps = 2/270 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG
Sbjct: 119 MVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+   
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANT 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAW 298
            IMYG+G +  GELIDLGVK  +V+K+GAW
Sbjct: 239 QIMYGQGFNREGELIDLGVKHKLVEKAGAW 268


>gi|223635943|emb|CAQ03773.1| recombination-repair protein [Enterovibrio nigricans]
 gi|223635945|emb|CAQ03774.1| recombination-repair protein [Enterovibrio nigricans]
          Length = 256

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/258 (71%), Positives = 221/258 (85%), Gaps = 2/258 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   IE VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  +
Sbjct: 1   KGSIMRLGDDRTM--DIETVSTGSLSLDIALGAGGLPFGRIVEIYGPESSGKTTLTLQVV 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK G TCAF+DAEHALD +YARKLGVD+ NLL+SQPDTGEQALEI D L RS AVD+
Sbjct: 59  AEAQKVGKTCAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIADALTRSSAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT++I  S  +++FINQ+RMKIG
Sbjct: 119 IVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PE  TGGNALKFY+SVRLDIRR+GSIK+ D + GN TRVKVVKNK+A+PFKQ EF
Sbjct: 179 VMFGNPENQTGGNALKFYASVRLDIRRIGSIKEGDEVVGNDTRVKVVKNKIAAPFKQAEF 238

Query: 269 DIMYGEGISFFGELIDLG 286
            IMYGEGI+ +GEL+DLG
Sbjct: 239 QIMYGEGINLYGELVDLG 256


>gi|186683193|ref|YP_001866389.1| recombinase A [Nostoc punctiforme PCC 73102]
 gi|238691204|sp|B2IWJ2|RECA_NOSP7 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|186465645|gb|ACC81446.1| recA protein [Nostoc punctiforme PCC 73102]
          Length = 359

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/322 (61%), Positives = 250/322 (77%), Gaps = 3/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL   L+QI+R +GKGAIM+LG    +   +E +SSG+L LD+ALG GG PKGR++E
Sbjct: 10  KQKALTMVLNQIERSFGKGAIMRLGDATRMR--VETISSGALTLDLALG-GGLPKGRVIE 66

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH +A+ Q+ GG  AFVDAEHALD  YA  LGVD+ NLLISQPDTGE
Sbjct: 67  IYGPESSGKTTVALHALAEVQRNGGIAAFVDAEHALDPTYAAALGVDIDNLLISQPDTGE 126

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
            ALEI D LVRS AVDI+VIDSVAAL PRAEIEGDMG++  G+QARLMSQALRK+T +I 
Sbjct: 127 SALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKITGNIG 186

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S C ++FINQ+R KIGV +GSPETTTGGNALKFY+SVRLDIRR+ ++K      GN+ +
Sbjct: 187 KSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGTDEYGNRVK 246

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV KNK+A PF+  EFDI++G+GIS  G ++DL  +  I+ + GAW+S+ G  + QGR+
Sbjct: 247 VKVAKNKVAPPFRIAEFDIIFGKGISTLGCVVDLAEETGIIIRKGAWYSYNGDNISQGRD 306

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
           N+  +L E  E AE I+ L+R+
Sbjct: 307 NAIKYLEEKPEFAEEIKKLVRE 328


>gi|222099768|ref|YP_002534336.1| Protein recA [Thermotoga neapolitana DSM 4359]
 gi|254790454|sp|B9K7N7|RECA_THENN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|221572158|gb|ACM22970.1| Protein recA [Thermotoga neapolitana DSM 4359]
          Length = 351

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 191/332 (57%), Positives = 253/332 (76%), Gaps = 6/332 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K   LE AL +I+  +GKG+IM LG +  + + +EV+ +GS+ +DIA G+GG+P+GRIVE
Sbjct: 7   KKSVLEKALKRIEENFGKGSIMILGDETQV-QPVEVIPTGSIAIDIATGVGGYPRGRIVE 65

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPESSGKTTLALH IA++QK GG  AF+DAEHALD +YA+ LGVDLK+LLISQPD GE
Sbjct: 66  IFGPESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGE 125

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSG VD+IV+DSVAAL PRAEIEG MG+   G+QARLMSQALRK+  S++
Sbjct: 126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVN 185

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +SK +++F NQ+RMKIGVMFGSPETTTGG ALKFY+++RL++RR  ++K+   + GN   
Sbjct: 186 KSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRLEVRRGEALKEGKDVIGNVVN 245

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF---KGQR--L 306
           VK+VKNK+A PFK  +  I+YG+GI    EL  +GV   ++ + G+W+ +   KG+   L
Sbjct: 246 VKIVKNKVAPPFKTAQTYIIYGKGIDREYELFHIGVDEGVITRKGSWYYYTTLKGEEVSL 305

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338
           GQG  N   FL+EN +IAE IE  +++  GL+
Sbjct: 306 GQGGSNVVQFLKENPQIAEEIERRIKEKYGLL 337


>gi|256851478|ref|ZP_05556867.1| recA protein [Lactobacillus jensenii 27-2-CHN]
 gi|260660899|ref|ZP_05861814.1| recA protein [Lactobacillus jensenii 115-3-CHN]
 gi|282933478|ref|ZP_06338854.1| RecA protein [Lactobacillus jensenii 208-1]
 gi|297206293|ref|ZP_06923688.1| recombination protein A [Lactobacillus jensenii JV-V16]
 gi|256616540|gb|EEU21728.1| recA protein [Lactobacillus jensenii 27-2-CHN]
 gi|260548621|gb|EEX24596.1| recA protein [Lactobacillus jensenii 115-3-CHN]
 gi|281302409|gb|EFA94635.1| RecA protein [Lactobacillus jensenii 208-1]
 gi|297149419|gb|EFH29717.1| recombination protein A [Lactobacillus jensenii JV-V16]
          Length = 360

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/339 (56%), Positives = 266/339 (78%), Gaps = 4/339 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K  AL+AAL +I++ +GKGA+M++G +  +   I  V +GSL LD A+G+GG+P+GRIV
Sbjct: 5   EKQAALDAALKKIEKNFGKGAVMRMGEK--VDTQISTVPTGSLALDAAIGVGGYPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQP+TG
Sbjct: 63  EVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+G+MG+S  G+QARLMSQALRKL+ +I
Sbjct: 123 EEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGNI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK    + GN+ 
Sbjct: 183 NKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSSDVVGNRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+ V   IVDK+G+W+S+K  R+GQGR
Sbjct: 243 KIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAVDKDIVDKAGSWYSYKEDRIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL--LQEPA 347
           EN+K +L ++ +I   I + +R+  G+ A SL   ++PA
Sbjct: 303 ENAKQYLEDHPDIYNEIMTQVREAYGIDAKSLEEKEDPA 341


>gi|89897825|ref|YP_514935.1| recombinase A [Chlamydophila felis Fe/C-56]
 gi|123735935|sp|Q256J8|RECA_CHLFF RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|89331197|dbj|BAE80790.1| mediator of ATP dependent DNA homologous recombination
           [Chlamydophila felis Fe/C-56]
          Length = 350

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 184/323 (56%), Positives = 254/323 (78%), Gaps = 2/323 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN+ D+ KALEAA++ I++ +G G+IM LG   +  E I  + +G+L LD+ALGIGG PK
Sbjct: 1   MNVPDRKKALEAAIAYIEKQFGSGSIMSLGKHSATHE-ISTIKTGALSLDLALGIGGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEI+GPESSGKTTLA H +A +QK GG  A++DAEHALD  YA  +G ++ +L+ISQ
Sbjct: 60  GRIVEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPGYASLIGANINDLMISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GE AL I ++L RSGAVD+IVIDSVAAL P++E+EGD+G+   G+QAR+MSQALRKL
Sbjct: 120 PDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGDIGDVHVGLQARMMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI- 245
           T++++RS+   +FINQ+R KIGV FG+PETTTGG ALKFYSS+R+DIRR+G+IK  +S  
Sbjct: 180 TATLARSQTCAIFINQIREKIGVSFGNPETTTGGRALKFYSSIRIDIRRIGAIKGNESFD 239

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+ +VKV KNK+A PF+  EFDI++ EGIS  G ++DL V+ +IV+K G+WF+++ ++
Sbjct: 240 LGNRIKVKVAKNKLAPPFRTAEFDILFNEGISSAGCILDLAVEHNIVEKKGSWFNYQDRK 299

Query: 306 LGQGRENSKIFLRENIEIAENIE 328
           LGQGRE  +  L++N ++ + +E
Sbjct: 300 LGQGREAVREELKKNKKLFDELE 322


>gi|320159562|ref|YP_004172786.1| protein RecA [Anaerolinea thermophila UNI-1]
 gi|319993415|dbj|BAJ62186.1| protein RecA [Anaerolinea thermophila UNI-1]
          Length = 362

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/324 (61%), Positives = 252/324 (77%), Gaps = 2/324 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +   L+ AL  I + YG+GAIM++G    +   +E + +GSL LDIALG+GG P+GRI E
Sbjct: 22  RRAVLDKALGDITKRYGEGAIMRMGEAQHM--AVEAIPTGSLSLDIALGVGGVPRGRITE 79

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+  H +A++Q+ GG  A++D EHALD  YA + GVD++NLLISQPDTGE
Sbjct: 80  IYGPESSGKTTICQHIVAEAQRMGGVAAYIDMEHALDPAYAARCGVDVENLLISQPDTGE 139

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI + LVRSGAVD++VIDSVAAL PRAEIEGDMG++  GMQARLMSQALRKL+ +I+
Sbjct: 140 QALEIAETLVRSGAVDVVVIDSVAALVPRAEIEGDMGDASMGMQARLMSQALRKLSGAIN 199

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++K  ++F NQ+R KIGVMFG+PETTTGG ALKFY+SVRLDIRR+ SIK    I GN+ R
Sbjct: 200 QTKTTVIFTNQLRQKIGVMFGNPETTTGGMALKFYASVRLDIRRIQSIKLGAEIIGNRVR 259

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           V+VVKNK+A PF+  EFDIMY EGIS  G+++DL     IV K GA+FS+   RLGQGRE
Sbjct: 260 VRVVKNKVAPPFRTAEFDIMYNEGISKVGDVLDLATSLDIVTKRGAFFSYGDVRLGQGRE 319

Query: 312 NSKIFLRENIEIAENIESLLRQNA 335
           N+K FLR+N ++ + IE  +RQ A
Sbjct: 320 NAKEFLRQNPDLLQEIELAVRQRA 343


>gi|291295133|ref|YP_003506531.1| recA protein [Meiothermus ruber DSM 1279]
 gi|281191413|gb|ADA57118.1| recombinase A [Meiothermus ruber]
 gi|290470092|gb|ADD27511.1| recA protein [Meiothermus ruber DSM 1279]
          Length = 349

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/327 (57%), Positives = 249/327 (76%), Gaps = 3/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KALE AL  I++ +GKGA+M+LG   +  + ++V+ +GSLGLD+ALGIGG PKGRI+
Sbjct: 4   DKQKALEGALKSIEKQFGKGAVMRLGE--APRQQVDVIPTGSLGLDMALGIGGIPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPES GKTTLAL  IAQ+Q+ GG  AFVDAEHALD IYA+ LGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESGGKTTLALSIIAQAQQAGGVAAFVDAEHALDPIYAKSLGVNIDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI ++L RSGA+D+IVIDSVAAL P+AEIEG MG++  G+QARLMSQALRKLT+++
Sbjct: 122 EQALEIVELLTRSGAIDVIVIDSVAALVPQAEIEGQMGDAFVGIQARLMSQALRKLTAAL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQ 249
           S+S    +FINQ+R K+G M+G+PETT GG ALKFY+SVRLD+R+ G  IK  +   GN+
Sbjct: 182 SKSNTAAIFINQIREKVGQMYGNPETTPGGRALKFYASVRLDVRKQGQPIKVGNDAVGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            RVKV KNK+A PF++ E ++ +G+GI    +L+ + +   ++DKSG+W S+   RLGQG
Sbjct: 242 VRVKVTKNKLAPPFREHEIELYFGKGIDPLADLVTVAIATEVIDKSGSWLSYGDTRLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336
           +E +  FLR    + + I   +   AG
Sbjct: 302 KEKAAEFLRGEPRLVQEIREKVLAQAG 328


>gi|58415341|emb|CAH57085.1| recA protein [Photobacterium damselae subsp. damselae]
 gi|58415343|emb|CAH57086.1| recA protein [Photobacterium damselae subsp. damselae]
          Length = 265

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/267 (69%), Positives = 227/267 (85%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   IE VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L TIA 
Sbjct: 1   SIMKLGDNRTM--DIETVSTGSLALDIALGAGGLPMGRIVEIFGPESSGKTTLTLETIAS 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGAVD+IV
Sbjct: 59  AQRQGKTCAFIDAEHALDPIYAKKLGVDIDQLLVSQPDTGEQALEICDALARSGAVDLIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIKD + + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKDGEEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GELIDLGVK  +++K+GA
Sbjct: 239 LYGQGFNRVGELIDLGVKQKLIEKAGA 265


>gi|52630825|gb|AAU84880.1| RecA [Burkholderia sp. R8349]
          Length = 246

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 184/246 (74%), Positives = 219/246 (89%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHA
Sbjct: 1   VVSTGSLGLDIALGVGGVPRGRVVEIYGPESSGKTTLTLQVIAEMQKIGGTAAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+
Sbjct: 61  LDIQYAGKLGVNVNDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY
Sbjct: 121 MGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFY 180

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
           +SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLG
Sbjct: 181 ASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLG 240

Query: 287 VKASIV 292
           V+A IV
Sbjct: 241 VQAKIV 246


>gi|307151323|ref|YP_003886707.1| recA protein [Cyanothece sp. PCC 7822]
 gi|306981551|gb|ADN13432.1| recA protein [Cyanothece sp. PCC 7822]
          Length = 370

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/327 (57%), Positives = 247/327 (75%), Gaps = 4/327 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  DK KAL   L+QI+R +GKG+IM+LG    +   +E + SG+L LD+ALG GG PKG
Sbjct: 20  NNPDKEKALNLVLNQIERSFGKGSIMRLGDAARMR--VETIPSGALTLDLALG-GGLPKG 76

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R++EIYGPESSGKTTLALH +A+ QK GG  AFVDAEHALD  YA  LGVD+ NLL++QP
Sbjct: 77  RVIEIYGPESSGKTTLALHALAEVQKAGGVAAFVDAEHALDPTYAEALGVDIHNLLVAQP 136

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGE ALEI D LVRS AVDI+V+DSVAAL PRAEIEG+MG++  G+QARLMS+ALRK+ 
Sbjct: 137 DTGESALEIVDQLVRSAAVDIVVVDSVAALVPRAEIEGEMGDNQVGLQARLMSKALRKIA 196

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSIT 246
            +I +S C+++F+NQ+R KIGV +GSPE TTGG ALKFY+SVRLDIRR+ ++K   +   
Sbjct: 197 GNIGKSGCVVIFLNQLRQKIGVTYGSPEVTTGGTALKFYASVRLDIRRIQTLKKGSEGEY 256

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G + +VKV KNK+A PF+  EFDI++G+GIS  G +ID+     ++ + GAW+S+ G  +
Sbjct: 257 GIRAKVKVAKNKVAPPFRIAEFDIIFGKGISQMGCMIDMAEHTDVITRKGAWYSYNGDNI 316

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333
            QGR+N+  +L EN + A  IE  +R+
Sbjct: 317 AQGRDNAVKYLEENPDTAVIIEKQVRE 343


>gi|325956365|ref|YP_004291777.1| recombinase A [Lactobacillus acidophilus 30SC]
 gi|325332930|gb|ADZ06838.1| recombinase A [Lactobacillus acidophilus 30SC]
          Length = 364

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 184/327 (56%), Positives = 259/327 (79%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K  AL+AAL +I++ +GKGA+M++G +      I  V +GSL LD A+G+GG+P+GRI+
Sbjct: 5   EKQAALDAALKKIEKNFGKGAVMRMGEKADT--QISTVPTGSLALDAAIGVGGYPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQP+TG
Sbjct: 63  EIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 123 EEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK    + GN+ 
Sbjct: 183 SKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDVLGNRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+     I+DK+G+W+S+K  R+GQGR
Sbjct: 243 KIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMATDKDIIDKAGSWYSYKNDRIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K +L ++ +I ++I+  +R+  G+
Sbjct: 303 ENAKKYLEDHPDIYQDIQEQVRKAYGI 329


>gi|33242121|ref|NP_877062.1| recombinase A [Chlamydophila pneumoniae TW-183]
 gi|33236631|gb|AAP98719.1| RecA [Chlamydophila pneumoniae TW-183]
          Length = 353

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/323 (57%), Positives = 253/323 (78%), Gaps = 2/323 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN+ D+ KALEAA++ I++ +G G+IM LG   +  E I  + +G+L LD+ALGI G PK
Sbjct: 1   MNLPDRKKALEAAVAYIEKQFGAGSIMSLGRHSATHE-ISTIKTGALSLDLALGIHGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++EI+GPESSGKTTLA H +A +QK GG  A++DAEHALD  YA  +GV++ +L+ISQ
Sbjct: 60  GRVIEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPSYASLIGVNIDDLMISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GE AL I ++L RSGAVD+IVIDSVAAL P++E+EGD+G+   G+QAR+MSQALRKL
Sbjct: 120 PDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGDIGDVHVGLQARMMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SI 245
           T+++SRS+   VFINQ+R KIGV FG+PETTTGG ALKFYSS+RLDIRR+GSIK  D S 
Sbjct: 180 TATLSRSQTCAVFINQIREKIGVSFGNPETTTGGRALKFYSSIRLDIRRIGSIKGSDNSD 239

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+ +VKV KNK+A PF+  EFDI++ EGIS  G ++DL V+ +I++K G+WF+++ ++
Sbjct: 240 IGNRIKVKVAKNKLAPPFRIAEFDILFNEGISSAGCILDLAVEYNIIEKKGSWFNYQEKK 299

Query: 306 LGQGRENSKIFLRENIEIAENIE 328
           LGQGRE  +  L+ N ++ + IE
Sbjct: 300 LGQGREFVREELKRNRKLFKEIE 322


>gi|227889603|ref|ZP_04007408.1| recombination protein A [Lactobacillus johnsonii ATCC 33200]
 gi|227849851|gb|EEJ59937.1| recombination protein A [Lactobacillus johnsonii ATCC 33200]
          Length = 363

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/332 (56%), Positives = 260/332 (78%), Gaps = 2/332 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+ AL +I++ +GKGA+M++G +  +   I  + SGSL LD ALG+GG+P+GRI+
Sbjct: 5   DKKKALDIALKKIEKDFGKGAVMRMGEK--VDTQISTIPSGSLALDAALGVGGYPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQP+TG
Sbjct: 63  EVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+GDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 123 EEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGDMGDSHVGLQARLMSQALRKLSGNI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++K I VFINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK    + GN+ 
Sbjct: 183 SKTKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQGSDVIGNRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GELID+     I+ K+G+W+S+   R+GQGR
Sbjct: 243 KLKVVKNKVAPPFKVAEVDIMYGKGISQTGELIDMAADKDIIKKAGSWYSYGDDRIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL 342
           EN+K +L E+ ++ E ++  +R+  G+ A ++
Sbjct: 303 ENAKQYLEEHPDVYEEVKEKVREAYGIDAKAI 334


>gi|58415656|emb|CAH57242.1| recA protein [Vibrio tapetis]
 gi|58415658|emb|CAH57243.1| recA protein [Vibrio tapetis]
          Length = 265

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/267 (69%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIKD D I GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEIVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GELIDLGVK  +VDK+GA
Sbjct: 239 LYGQGFNRNGELIDLGVKHKLVDKAGA 265


>gi|42518764|ref|NP_964694.1| recombinase A [Lactobacillus johnsonii NCC 533]
 gi|60392993|sp|P62216|RECA_LACJO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|41583050|gb|AAS08660.1| RecA protein [Lactobacillus johnsonii NCC 533]
          Length = 360

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/332 (56%), Positives = 260/332 (78%), Gaps = 2/332 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+ AL +I++ +GKGA+M++G +  +   I  + SGSL LD ALG+GG+P+GRI+
Sbjct: 5   DKKKALDIALKKIEKDFGKGAVMRMGEK--VDTQISTIPSGSLALDAALGVGGYPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQP+TG
Sbjct: 63  EVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+GDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 123 EEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGDMGDSHVGLQARLMSQALRKLSGNI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++K I VFINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK    + GN+ 
Sbjct: 183 SKTKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQGSDVIGNRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GELID+     I+ K+G+W+S+   R+GQGR
Sbjct: 243 KLKVVKNKVAPPFKVAEVDIMYGKGISQTGELIDMAADKDIIKKAGSWYSYGDDRIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL 342
           EN+K +L E+ ++ E ++  +R+  G+ A ++
Sbjct: 303 ENAKQYLEEHPDVYEEVKEKVREAYGIDAKAI 334


>gi|162447747|ref|YP_001620879.1| recombination protein [Acholeplasma laidlawii PG-8A]
 gi|189039587|sp|A9NGM3|RECA_ACHLI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|161985854|gb|ABX81503.1| recombination protein [Acholeplasma laidlawii PG-8A]
          Length = 331

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/323 (57%), Positives = 249/323 (77%), Gaps = 2/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K +ALE AL QI++ +GKG+IM+LG        IE + SGS+ LDIALGIGG+P+GRI+E
Sbjct: 6   KQQALELALKQIEKQFGKGSIMKLGDGAD--HSIEAIPSGSIALDIALGIGGYPRGRIIE 63

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTL LH +A +QK GGT AF+DAEHALD  YA+ LGVD+ NL++SQPDTGE
Sbjct: 64  VYGPESSGKTTLTLHAMASAQKQGGTVAFIDAEHALDPNYAKALGVDIDNLVLSQPDTGE 123

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL+I + L++SG++D+IVIDSVAAL P AEI GDM  +  G+QAR+MSQA+RK++  IS
Sbjct: 124 QALDIAEALIKSGSIDMIVIDSVAALVPEAEIAGDMSANHVGLQARMMSQAMRKMSGVIS 183

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S  + +FINQ+R K+GVMFG+PETT GG ALKF+SSVRL+IRR  +IK    + G ++ 
Sbjct: 184 KSNVVAIFINQIREKVGVMFGNPETTPGGRALKFFSSVRLEIRRAEAIKQGSEMIGIKSN 243

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVK+K+A P K    DIMYG GIS  GE++DL V+ ++V+KSGAW++   ++LGQGR+
Sbjct: 244 VKVVKSKVAPPLKTASIDIMYGTGISRSGEVLDLSVELNLVNKSGAWYNIGEEKLGQGRD 303

Query: 312 NSKIFLRENIEIAENIESLLRQN 334
           N+K +L +  E+   +E  +R +
Sbjct: 304 NAKQYLEDKPELLNELEKKVRTH 326


>gi|163781649|ref|ZP_02176649.1| recombinase A [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882869|gb|EDP76373.1| recombinase A [Hydrogenivirga sp. 128-5-R1-1]
          Length = 345

 Score =  388 bits (997), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/328 (57%), Positives = 254/328 (77%), Gaps = 2/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALEA+++ I++ +GKG+IM L +  ++   ++V+ +GSL LDIA GIGG P+GRI+
Sbjct: 12  EKKKALEASIANIEKRFGKGSIMPLHAAETV--KVDVIPTGSLALDIATGIGGIPRGRII 69

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E++G ESSGKTTLALH IAQ+QK GG   F+DAEHALD  YA+ LGVD++NL ISQPD G
Sbjct: 70  EVFGVESSGKTTLALHVIAQAQKKGGVAVFIDAEHALDPKYAKNLGVDVENLYISQPDYG 129

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L+ SGAVD+IV+DSVAAL PR E+EG+MGE+  G QARLMSQALRKL   +
Sbjct: 130 EQALEIAESLINSGAVDVIVVDSVAALVPRDELEGEMGEAQVGKQARLMSQALRKLKGIV 189

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S   L+FINQ+R KIGVMFG+PETT GG ALKF+S +RL++RR+G IK+ +   G + 
Sbjct: 190 HKSNTSLIFINQIREKIGVMFGNPETTPGGRALKFFSDMRLEVRRIGDIKEGNEKVGYRV 249

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RV+VVKNK+A PF++ EFD++YGEGI    +LID+     ++ KSG+W+S+  QR+GQG+
Sbjct: 250 RVRVVKNKLAPPFQEAEFDMIYGEGICKLCDLIDVATDKGVLTKSGSWYSYGDQRIGQGK 309

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338
           E  K +L+EN E+A  IE  +R+ AGLV
Sbjct: 310 EQVKRYLKENPELAREIEEKVREVAGLV 337


>gi|52630783|gb|AAU84859.1| RecA [Pandoraea pulmonicola]
          Length = 246

 Score =  388 bits (997), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 183/246 (74%), Positives = 216/246 (87%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           VVS+GSLGLDIALG+GG P+GR++EIYGPESSGKTTL L  +A+ QK GGTCAF+DAEHA
Sbjct: 1   VVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YA KLGV +  LLISQPDTGEQALEI D LVRSG++D+I+IDSVAAL P+AEIEG+
Sbjct: 61  LDVGYASKLGVSVPELLISQPDTGEQALEIADALVRSGSIDLIIIDSVAALVPKAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+SLPG+QARLMSQALRKLT +I R+ C ++FINQ+RMKIGVMFG+PETTTGGNALKFY
Sbjct: 121 MGDSLPGLQARLMSQALRKLTGTIKRTNCTVIFINQIRMKIGVMFGNPETTTGGNALKFY 180

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
           SSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YG+GIS  GE+IDLG
Sbjct: 181 SSVRLDIRRIGSIKKGDEVVGNETRVKVVKNKVSPPFREPIFDILYGQGISREGEIIDLG 240

Query: 287 VKASIV 292
           V A IV
Sbjct: 241 VTAKIV 246


>gi|290795105|gb|ADD64568.1| RecA recombinase [Vibrio splendidus]
 gi|290795107|gb|ADD64569.1| RecA recombinase [Vibrio splendidus]
          Length = 267

 Score =  388 bits (997), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/269 (68%), Positives = 228/269 (84%), Gaps = 2/269 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  I
Sbjct: 1   KGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D+
Sbjct: 59  AAAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG
Sbjct: 119 LVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E 
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAET 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGA 297
            I+YG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 QILYGKGFNREGELIDLGVKNKLVEKAGA 267


>gi|170288756|ref|YP_001738994.1| recA protein [Thermotoga sp. RQ2]
 gi|238688832|sp|B1LAG3|RECA_THESQ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|170176259|gb|ACB09311.1| recA protein [Thermotoga sp. RQ2]
          Length = 356

 Score =  388 bits (997), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 193/333 (57%), Positives = 253/333 (75%), Gaps = 6/333 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K   LE AL +I+  +GKG+IM LG +  + + +EV+ +GSL +DIA G+GG+P+GRIVE
Sbjct: 7   KKSVLEKALKRIEENFGKGSIMILGDETQV-QPVEVIPTGSLAIDIATGVGGYPRGRIVE 65

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+G ESSGKTTLALH IA++QK GG  AF+DAEHALD +YA+ LGVDLK+LLISQPD GE
Sbjct: 66  IFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGE 125

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSG VD+IV+DSVAAL PRAEIEG MG+   G+QARLMSQALRK+  S++
Sbjct: 126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVN 185

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +SK +++F NQ+RMKIGVMFGSPETTTGG ALKFY+++R+++RR   IK+   + GN   
Sbjct: 186 KSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRRGEPIKEGKDVIGNVIN 245

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF---KGQR--L 306
           VK+VKNK+A PFK  +  I+YG+GI    EL ++ V   IVD+ G+W+ +   KG+   L
Sbjct: 246 VKIVKNKVAPPFKTAQTYIIYGKGIDREYELFNIAVNEGIVDRKGSWYYYTTLKGEEVSL 305

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           GQG  N+  FL++N EIA  IE  +R+  GL++
Sbjct: 306 GQGSSNAVQFLKDNPEIAGEIERRIREKYGLLS 338


>gi|268319835|ref|YP_003293491.1| DNA recombination protein RecA [Lactobacillus johnsonii FI9785]
 gi|262398210|emb|CAX67224.1| bacterial DNA recombination protein RecA [Lactobacillus johnsonii
           FI9785]
          Length = 363

 Score =  388 bits (997), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/332 (56%), Positives = 260/332 (78%), Gaps = 2/332 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+ AL +I++ +GKGA+M++G +  +   I  + SGSL LD ALG+GG+P+GRI+
Sbjct: 5   DKKKALDIALKKIEKDFGKGAVMRMGEK--VDTQISTIPSGSLALDAALGVGGYPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQP+TG
Sbjct: 63  EVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+GDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 123 EEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGDMGDSHVGLQARLMSQALRKLSGNI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK    + GN+ 
Sbjct: 183 SKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQGSDVIGNRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GELID+     I+ K+G+W+S+   R+GQGR
Sbjct: 243 KLKVVKNKVAPPFKVAEVDIMYGKGISQTGELIDMAADKDIIKKAGSWYSYGDDRIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL 342
           EN+K +L E+ ++ E ++  +R+  G+ A ++
Sbjct: 303 ENAKQYLEEHPDVYEEVKEKVREAYGIDAKAI 334


>gi|323701906|ref|ZP_08113576.1| recA protein [Desulfotomaculum nigrificans DSM 574]
 gi|323533210|gb|EGB23079.1| recA protein [Desulfotomaculum nigrificans DSM 574]
          Length = 347

 Score =  388 bits (996), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/327 (62%), Positives = 264/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KALE ALS I++ +GKG+IM+LG    +   IE +S+G+L LDIALG+GG P+GR++
Sbjct: 3   DKVKALELALSNIEKQFGKGSIMKLGEATKL--NIEAISTGALSLDIALGVGGVPRGRVI 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA++QKTGG  AF+DAEHALD +YAR+LGVD+ NLL+SQPDTG
Sbjct: 61  EIYGPESSGKTTVALHIIAEAQKTGGMAAFIDAEHALDPVYARRLGVDIDNLLVSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+D++V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKLT  +
Sbjct: 121 EQALEICEALVRSGAIDVVVVDSVAALVPRAEIEGEMGDTHVGLQARLMSQALRKLTGIV 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S+ I++FINQ+R K+GV++GSPE TTGG ALKFY+SVRL++R+  +IK    I G++T
Sbjct: 181 SKSRSIVIFINQVREKVGVVYGSPEVTTGGRALKFYASVRLEVRKHENIKQGVDIIGSRT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PFK  EFDIMYG GIS  G L+D+     I++KSGAW+S+  +RLGQGR
Sbjct: 241 KVKVVKNKVAPPFKMAEFDIMYGTGISKEGSLLDVATDLKIINKSGAWYSYGDERLGQGR 300

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN K   +E  E+ + IE+ +R+   L
Sbjct: 301 ENVKELFKERPELCQEIEAKVREKLAL 327


>gi|215271650|emb|CAR57858.1| recombination-repair protein [Vibrio campbellii]
          Length = 268

 Score =  388 bits (996), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 182/270 (67%), Positives = 227/270 (84%), Gaps = 2/270 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD +YA KLGVD+  LL+SQPDTGEQALEI D L RSGA+D+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPVYAMKLGVDIDALLVSQPDTGEQALEICDALARSGAIDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG
Sbjct: 119 MVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+   
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANT 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAW 298
            IMYG+G +  GELIDLGVK  +V+K+GAW
Sbjct: 239 QIMYGQGFNREGELIDLGVKHKLVEKAGAW 268


>gi|238854892|ref|ZP_04645222.1| protein RecA [Lactobacillus jensenii 269-3]
 gi|260664179|ref|ZP_05865032.1| recA protein [Lactobacillus jensenii SJ-7A-US]
 gi|282931604|ref|ZP_06337097.1| RecA protein [Lactobacillus jensenii 208-1]
 gi|313472391|ref|ZP_07812883.1| protein RecA [Lactobacillus jensenii 1153]
 gi|238832682|gb|EEQ24989.1| protein RecA [Lactobacillus jensenii 269-3]
 gi|239529747|gb|EEQ68748.1| protein RecA [Lactobacillus jensenii 1153]
 gi|260562065|gb|EEX28034.1| recA protein [Lactobacillus jensenii SJ-7A-US]
 gi|281304215|gb|EFA96324.1| RecA protein [Lactobacillus jensenii 208-1]
          Length = 360

 Score =  388 bits (996), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/353 (53%), Positives = 274/353 (77%), Gaps = 5/353 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K  AL+AAL +I++ +GKGA+M++G +  +   I  + +GSL LD A+G+GG+P+GRI+
Sbjct: 5   EKQAALDAALKKIEKNFGKGAVMRMGEK--VDTQISTIPTGSLALDAAIGVGGYPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQP+TG
Sbjct: 63  EVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+G+MG+S  G+QARLMSQALRKL+ +I
Sbjct: 123 EEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGNI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK    + GN+ 
Sbjct: 183 NKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSSDVVGNRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+ V+  IVDK+G+W+S+  +++GQGR
Sbjct: 243 KIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAVEKDIVDKAGSWYSYNDEKIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL--LQEPA-INTKDDADKDDTD 360
           EN+K +L ++ +I   I + +R+  G+ A SL   ++PA +  K D D+  +D
Sbjct: 303 ENAKQYLEDHPDIYSEIMTKVREAYGIDAKSLEEKEDPAKVKEKIDQDEKSSD 355


>gi|58415399|emb|CAH57114.1| recA protein [Vibrio chagasii]
 gi|58415401|emb|CAH57115.1| recA protein [Vibrio chagasii]
          Length = 265

 Score =  388 bits (996), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/267 (69%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GELIDLGVK  +VDK+GA
Sbjct: 239 LYGQGFNREGELIDLGVKNKLVDKAGA 265


>gi|75911121|ref|YP_325417.1| recombinase A [Anabaena variabilis ATCC 29413]
 gi|92090633|sp|P14167|RECA_ANAVT RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|75704846|gb|ABA24522.1| RecA protein [Anabaena variabilis ATCC 29413]
          Length = 358

 Score =  388 bits (996), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/322 (61%), Positives = 250/322 (77%), Gaps = 3/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL   L+QI+R +GKGAIM+LG    +   +E +S+G+L LD+ALG GG PKGR++E
Sbjct: 10  KQKALTMVLNQIERSFGKGAIMRLGDATRMR--VETISTGALTLDLALG-GGLPKGRVIE 66

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH IA+ QK GG  AFVDAEHALD  YA  LGVD++NLL+SQPDTGE
Sbjct: 67  IYGPESSGKTTVALHAIAEVQKEGGIAAFVDAEHALDPTYASALGVDIQNLLVSQPDTGE 126

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
            ALEI D LVRS AVDI+VIDSVAAL PRAEIEGDMG++  G+QARLMSQALRK+T +I 
Sbjct: 127 SALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKITGNIG 186

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S C ++FINQ+R KIGV +GSPETTTGGNALKFY+SVRLDIRR+ ++K      GN+ +
Sbjct: 187 KSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGTDEFGNRVK 246

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV KNK+A PF+  EFDI++G+G+S  G L+DL  +  I+ + GAW+S+ G  + QGR+
Sbjct: 247 VKVAKNKVAPPFRIAEFDIIFGKGVSTLGCLVDLAEETGILLRKGAWYSYNGDNISQGRD 306

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
           N+  +L E  E AE I+  +R+
Sbjct: 307 NAIKYLEEKPEFAEQIKQQVRE 328


>gi|157364891|ref|YP_001471658.1| recombinase A [Thermotoga lettingae TMO]
 gi|157315495|gb|ABV34594.1| recA protein [Thermotoga lettingae TMO]
          Length = 353

 Score =  388 bits (996), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/346 (55%), Positives = 255/346 (73%), Gaps = 7/346 (2%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K++ LE A+ +I+  +GKG+IM LG +  +   +EVV +GSL LD+A G+GG+P+GRI+E
Sbjct: 9   KAEVLEKAIKKIENSFGKGSIMILGEENQVAP-VEVVPTGSLSLDVATGVGGYPRGRIIE 67

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPE+SGKTT++LH IA+ QK GG  A VDAEHALD +YA+ LGVDLK LLISQPD GE
Sbjct: 68  IYGPEASGKTTISLHAIAEVQKKGGIAAIVDAEHALDPVYAKALGVDLKTLLISQPDYGE 127

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRS AVD+++IDSVAAL PR EIEG+MG+   G+QARLMSQALRK+  +++
Sbjct: 128 QALEIVDELVRSNAVDLVIIDSVAALVPRVEIEGNMGDLQVGLQARLMSQALRKIAGNVN 187

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           RSK I++F NQ+RMKIGVMFG+PETTTGG ALKFY+++R+++RR  SIK+   I GN   
Sbjct: 188 RSKAIVIFTNQIRMKIGVMFGNPETTTGGLALKFYATMRIEVRRGESIKEGTEIIGNAVT 247

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF-----KGQRL 306
            KVVKNK+A PF++ EFDI+YG+GI    EL ++GV   ++ + G+WF +     K   L
Sbjct: 248 AKVVKNKVAPPFRKAEFDIIYGKGIVKENELFNMGVSEGLIQRKGSWFFYMADDGKEYSL 307

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GQG+ N   +  EN +IA  IE  +R    L  + +L+E   N K+
Sbjct: 308 GQGKNNVVNYFVENPQIANEIERKIRLKYNLPVE-ILEEKKQNGKE 352


>gi|290795109|gb|ADD64570.1| RecA recombinase [Vibrio tasmaniensis]
          Length = 266

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/268 (69%), Positives = 227/268 (84%), Gaps = 2/268 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA
Sbjct: 1   GSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++
Sbjct: 59  AAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVL 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGV
Sbjct: 119 VIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  
Sbjct: 179 MFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQ 238

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGA 297
           I+YG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 ILYGKGFNREGELIDLGVKNKLVEKAGA 266


>gi|148270072|ref|YP_001244532.1| recombinase A [Thermotoga petrophila RKU-1]
 gi|166220691|sp|A5IL83|RECA_THEP1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|147735616|gb|ABQ46956.1| RecA protein [Thermotoga petrophila RKU-1]
          Length = 356

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/333 (57%), Positives = 255/333 (76%), Gaps = 6/333 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K   LE AL +I+  +GKG+IM LG +  + + +EV+ +GSL +DIA G+GG+P+GRIVE
Sbjct: 7   KKSVLEKALKRIEENFGKGSIMILGDETQV-QPVEVIPTGSLAIDIATGVGGYPRGRIVE 65

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+G ESSGKTTLALH IA++QK GG  AF+DAEHALD +YA+ LGVDLK+LLISQPD GE
Sbjct: 66  IFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGE 125

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSG VD+IV+DSVAAL PRAEIEG MG+   G+QARLMSQALRK+  S++
Sbjct: 126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVN 185

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +SK +++F NQ+RMKIGVMFGSPETTTGG ALKFY+++R+++RR   IK+   + GN   
Sbjct: 186 KSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRRGEPIKEGKDVIGNVIS 245

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF---KGQR--L 306
           VK+VKNK+A PFK  +  I+YG+GI    EL ++ V+ S+V++ G+W+ +   KG+   L
Sbjct: 246 VKIVKNKVAPPFKTAQTYIIYGKGIDREYELFNIAVEESMVERKGSWYYYTTLKGEEVSL 305

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           GQG  N+  FL++N EIA  IE  +R+  GL++
Sbjct: 306 GQGSSNAVQFLKDNPEIAGEIERRIREKYGLLS 338


>gi|15644602|ref|NP_229655.1| recombinase A [Thermotoga maritima MSB8]
 gi|548716|sp|P36203|RECA_THEMA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|297787594|pdb|3HR8|A Chain A, Crystal Structure Of Thermotoga Maritima Reca
 gi|4982444|gb|AAD36921.1|AE001823_3 DNA repair protein [Thermotoga maritima MSB8]
 gi|385170|gb|AAA27417.1| DNA repair protein [Thermotoga maritima]
          Length = 356

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/333 (57%), Positives = 253/333 (75%), Gaps = 6/333 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K   LE AL +I+  +GKG+IM LG +  + + +EV+ +GSL +DIA G+GG+P+GRIVE
Sbjct: 7   KKSVLEKALKRIEENFGKGSIMILGDETQV-QPVEVIPTGSLAIDIATGVGGYPRGRIVE 65

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+G ESSGKTTLALH IA++QK GG  AF+DAEHALD +YA+ LGVDLK+LLISQPD GE
Sbjct: 66  IFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGE 125

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSG VD+IV+DSVAAL PRAEIEG MG+   G+QARLMSQALRK+  S++
Sbjct: 126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVN 185

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +SK +++F NQ+RMKIGVMFGSPETTTGG ALKFY+++R+++RR   IK+   + GN   
Sbjct: 186 KSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRRGEPIKEGKDVIGNVIS 245

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF---KGQR--L 306
           VK+VKNK+A PFK  +  I+YG+GI    EL ++ V   IVD+ G+W+ +   KG+   L
Sbjct: 246 VKIVKNKVAPPFKTAQTYIIYGKGIDREYELFNIAVNEGIVDRKGSWYYYTTLKGEEVSL 305

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           GQG  N+  FL++N EIA  IE  +R+  GL++
Sbjct: 306 GQGSSNAVQFLKDNPEIAGEIERRIREKYGLLS 338


>gi|110264733|gb|ABG56942.1| recA protein [Photobacterium kishitanii]
 gi|110264735|gb|ABG56943.1| recA protein [Photobacterium kishitanii]
 gi|110264737|gb|ABG56944.1| recA protein [Photobacterium kishitanii]
 gi|110264739|gb|ABG56945.1| recA protein [Photobacterium kishitanii]
 gi|110264745|gb|ABG56948.1| recA protein [Photobacterium kishitanii]
 gi|110264747|gb|ABG56949.1| recA protein [Photobacterium kishitanii]
 gi|110264761|gb|ABG56956.1| recA protein [Photobacterium kishitanii]
 gi|110264763|gb|ABG56957.1| recA protein [Photobacterium kishitanii]
 gi|110264765|gb|ABG56958.1| recA protein [Photobacterium kishitanii]
 gi|110264767|gb|ABG56959.1| recA protein [Photobacterium kishitanii]
 gi|110264781|gb|ABG56966.1| recA protein [Photobacterium kishitanii]
 gi|110264785|gb|ABG56968.1| recA protein [Photobacterium kishitanii]
 gi|156067111|gb|ABR12777.2| recombinase A [Photobacterium kishitanii]
 gi|156067115|gb|ABR12779.2| recombinase A [Photobacterium kishitanii]
 gi|156067125|gb|ABR12784.2| recombinase A [Photobacterium kishitanii]
 gi|156067129|gb|ABR12786.2| recombinase A [Photobacterium kishitanii]
 gi|156067131|gb|ABR12787.2| recombinase A [Photobacterium kishitanii]
 gi|156067135|gb|ABR12789.2| recombinase A [Photobacterium kishitanii]
 gi|156067137|gb|ABR12790.2| recombinase A [Photobacterium kishitanii]
 gi|156067139|gb|ABR12791.2| recombinase A [Photobacterium kishitanii]
 gi|156067155|gb|ABR12799.2| recombinase A [Photobacterium kishitanii]
          Length = 262

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/264 (69%), Positives = 224/264 (84%), Gaps = 2/264 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L TIA +QK G TCAF+DAEHALD IYA KLGVD+  LL+SQPDTGEQALEI D L R
Sbjct: 59  LTLETIAAAQKAGKTCAFIDAEHALDPIYAEKLGVDINQLLVSQPDTGEQALEIVDALAR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 119 SGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 178

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+P
Sbjct: 179 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAP 238

Query: 263 FKQVEFDIMYGEGISFFGELIDLG 286
           FKQ E  I+YG+G +  GELIDLG
Sbjct: 239 FKQAETQILYGQGFNRNGELIDLG 262


>gi|281412047|ref|YP_003346126.1| recA protein [Thermotoga naphthophila RKU-10]
 gi|281373150|gb|ADA66712.1| recA protein [Thermotoga naphthophila RKU-10]
          Length = 356

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/333 (57%), Positives = 255/333 (76%), Gaps = 6/333 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K   LE AL +I+  +GKG+IM LG +  + + +EV+ +GSL +DIA G+GG+P+GRIVE
Sbjct: 7   KKSVLEKALKRIEENFGKGSIMILGDETQV-QPVEVIPTGSLAIDIATGVGGYPRGRIVE 65

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+G ESSGKTTLALH IA++QK GG  AF+DAEHALD +YA+ LGVDLK+LLISQPD GE
Sbjct: 66  IFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGE 125

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSG VD+IV+DSVAAL PRAEIEG MG+   G+QARLMSQALRK+  S++
Sbjct: 126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVN 185

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +SK +++F NQ+RMKIGVMFGSPETTTGG ALKFY+++R+++RR   IK+   + GN   
Sbjct: 186 KSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRRGEPIKEGKDVIGNVIS 245

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF---KGQR--L 306
           VK+VKNK+A PFK  +  I+YG+GI    EL ++ V+ S+V++ G+W+ +   KG+   L
Sbjct: 246 VKIVKNKVAPPFKTAQTYIIYGKGIDREYELFNIAVEESMVERKGSWYYYTTLKGEEVSL 305

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           GQG  N+  FL++N EIA  IE  +R+  GL++
Sbjct: 306 GQGSSNAVQFLKDNPEIAGEIERRIREKYGLLS 338


>gi|76789389|ref|YP_328475.1| recombinase A [Chlamydia trachomatis A/HAR-13]
 gi|237803079|ref|YP_002888273.1| recombinase A [Chlamydia trachomatis B/Jali20/OT]
 gi|237805000|ref|YP_002889154.1| recombinase A [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311475|ref|ZP_05354045.1| recombinase A [Chlamydia trachomatis 6276]
 gi|255317776|ref|ZP_05359022.1| recombinase A [Chlamydia trachomatis 6276s]
 gi|123758569|sp|Q3KL45|RECA_CHLTA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|76167919|gb|AAX50927.1| RecA [Chlamydia trachomatis A/HAR-13]
 gi|231273300|emb|CAX10215.1| recombinase A [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274313|emb|CAX11108.1| recombinase A [Chlamydia trachomatis B/Jali20/OT]
          Length = 352

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/329 (55%), Positives = 254/329 (77%), Gaps = 2/329 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M++ D+ +ALEAA++ I++ +G G+IM LG   S  E I  + +G+L LD+ALGIGG PK
Sbjct: 1   MSVPDRKRALEAAIAYIEKQFGAGSIMSLGKHSSAHE-ISTIKTGALSLDLALGIGGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEI+GPESSGKTTLA H +A +QK GG  A++DAEHALD  YA  +G ++ +L+ISQ
Sbjct: 60  GRIVEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPNYAALIGANINDLMISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GE AL I ++L RSGAVD+IVIDSVAAL P++E+EG++G+   G+QAR+MSQALRKL
Sbjct: 120 PDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGEIGDVHVGLQARMMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI- 245
           T++++R+    +FINQ+R KIGV FG+PETTTGG ALKFYSS+R+DIRR+GSIK  ++  
Sbjct: 180 TATLARTNTCAIFINQIREKIGVSFGNPETTTGGRALKFYSSIRIDIRRIGSIKGGENFD 239

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+ +VKV KNK+A PF+  EFDI++ EGIS  G +IDL V+ +I+DK G+WF+++ ++
Sbjct: 240 IGNRIKVKVAKNKLAPPFRTAEFDILFNEGISSAGCIIDLAVEKNIIDKKGSWFNYQDRK 299

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQN 334
           LGQGRE  +  L+ N E+   +E  + ++
Sbjct: 300 LGQGREAVREELKRNKELFHELERCIYES 328


>gi|162450896|ref|YP_001613263.1| RecA protein [Sorangium cellulosum 'So ce 56']
 gi|161161478|emb|CAN92783.1| RecA protein [Sorangium cellulosum 'So ce 56']
          Length = 342

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/306 (60%), Positives = 235/306 (76%), Gaps = 1/306 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           I +K + ++  +  I++ +GKGAIM L  +    + I ++ +GSL LD ALGIGG+P+GR
Sbjct: 5   IAEKLRTVKTVVGTIEKQFGKGAIMSLNDENETRD-IGLIRTGSLSLDAALGIGGYPRGR 63

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEIYGPESSGKTTL LH + ++Q+ GG  AF+DAEHA D  YAR +GVD+  LL+SQPD
Sbjct: 64  IVEIYGPESSGKTTLTLHAMREAQRAGGVAAFIDAEHAFDVTYARSVGVDIDRLLVSQPD 123

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GEQALEI +ML RS AVD+IV+DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT 
Sbjct: 124 NGEQALEIVEMLARSSAVDVIVVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTG 183

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
              R+   L+FINQ+R KIGV+FG+PE TTGGNALKFY+SVRLD+RRVG +K  D   G+
Sbjct: 184 ICHRTDTTLIFINQLRQKIGVVFGNPEVTTGGNALKFYASVRLDVRRVGPVKVSDEAIGS 243

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNKMA PF++ EFDI +G GI    +LID   +  +V+KSGA  SF G+ +GQ
Sbjct: 244 RTRVKVVKNKMAPPFREAEFDIRWGAGIDGAADLIDFACQLGVVEKSGAHLSFAGEHIGQ 303

Query: 309 GRENSK 314
           GRE ++
Sbjct: 304 GRERAR 309


>gi|58415668|emb|CAH57248.1| recA protein [Vibrio tubiashii]
          Length = 265

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/267 (69%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLTLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GELIDLGVK  +VDK+GA
Sbjct: 239 LYGQGFNREGELIDLGVKNKLVDKAGA 265


>gi|269784292|emb|CBH50791.1| recA protein [Vibrio sp. C 15.19]
          Length = 252

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 180/251 (71%), Positives = 217/251 (86%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +QK G TCAFVDAEHALD I
Sbjct: 1   GSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPI 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIEG+MG+S
Sbjct: 61  YAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGDS 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
             G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR
Sbjct: 121 HMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVR 180

Query: 231 LDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS 290
           LDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK  
Sbjct: 181 LDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKNK 240

Query: 291 IVDKSGAWFSF 301
           +V+K+GAW+S+
Sbjct: 241 LVEKAGAWYSY 251


>gi|164608458|gb|ABY62532.1| recombinase A [Aliivibrio salmonicida]
          Length = 263

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/265 (69%), Positives = 224/265 (84%), Gaps = 2/265 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IAQ
Sbjct: 1   SIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAQ 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD IYA+KLGVD+  LL SQPDTGEQALEI D L RSGAVD+IV
Sbjct: 59  AQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLCSQPDTGEQALEIVDALARSGAVDLIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKS 295
           +YG+G +  GELIDLGVK  +VDK+
Sbjct: 239 LYGKGFNREGELIDLGVKHKLVDKA 263


>gi|58415622|emb|CAH57225.1| recA protein [Vibrio penaeicida]
          Length = 265

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/267 (68%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIKD D I GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEIVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 MYGQGFNREGELIDLGVKHKLVEKAGA 265


>gi|52630817|gb|AAU84876.1| RecA [Burkholderia sp. R15273]
          Length = 243

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 182/243 (74%), Positives = 217/243 (89%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGT AF+DAEHA
Sbjct: 1   VVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+
Sbjct: 61  LDIQYAGKLGVNVNDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY
Sbjct: 121 MGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFY 180

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
           +SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A PF++  FDI+YGEGIS  GE+IDLG
Sbjct: 181 ASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPPFREAIFDILYGEGISRQGEVIDLG 240

Query: 287 VKA 289
           V+A
Sbjct: 241 VQA 243


>gi|289524806|emb|CBJ94459.1| recA protein [Vibrio sp. Cmf 6.5]
          Length = 252

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 180/252 (71%), Positives = 218/252 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +QK G TCAF+DAEHALD
Sbjct: 1   STGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIEG+MG
Sbjct: 61  PIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+S
Sbjct: 121 DSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           VRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK
Sbjct: 181 VRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVK 240

Query: 289 ASIVDKSGAWFS 300
             +V+K+GAW+S
Sbjct: 241 NKLVEKAGAWYS 252


>gi|257452956|ref|ZP_05618255.1| recombinase A [Fusobacterium sp. 3_1_5R]
 gi|317059497|ref|ZP_07923982.1| recombinase A [Fusobacterium sp. 3_1_5R]
 gi|313685173|gb|EFS22008.1| recombinase A [Fusobacterium sp. 3_1_5R]
          Length = 359

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/318 (59%), Positives = 243/318 (76%), Gaps = 3/318 (0%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
            K + +  K KALE A+ +I + +G+GAIM+LG    +   IEV+ +GSL LD ALG+GG
Sbjct: 6   EKTVELTAKQKALETAVKEITKDFGEGAIMKLGDNSHM--QIEVIPTGSLNLDAALGLGG 63

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P+GR+VEIYG ESSGKTT+ALH IA++QK GG  AF+DAEHALD +YA+ LGVD+  LL
Sbjct: 64  VPRGRVVEIYGAESSGKTTIALHIIAEAQKMGGIAAFIDAEHALDPVYAKALGVDIDELL 123

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           ISQPD GEQAL+I D LVRSGA+D+IV+DSVAAL P+ EI+G+M +   G+QARLMS+AL
Sbjct: 124 ISQPDFGEQALDIADTLVRSGAIDVIVVDSVAALVPKVEIDGEMSDQQMGLQARLMSKAL 183

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           RKLT+++++SK  ++FINQ+R KIG   FG   TTTGG ALKFYSSVR++++R+ S+K  
Sbjct: 184 RKLTATLNKSKTTMIFINQIREKIGSFGFGPQTTTTGGKALKFYSSVRMEVKRIASVKQG 243

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           D + GN+T VKV KNK+A PFK+  F IMYG+GIS  GE++D+ +   IV KSGAWFSF 
Sbjct: 244 DDVIGNETVVKVTKNKIAPPFKEASFQIMYGKGISKVGEILDIALAKDIVAKSGAWFSFG 303

Query: 303 GQRLGQGRENSKIFLREN 320
             RLGQG+EN K  L E 
Sbjct: 304 EIRLGQGKENVKARLEEE 321


>gi|156067133|gb|ABR12788.2| recombinase A [Photobacterium kishitanii]
          Length = 262

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/264 (69%), Positives = 224/264 (84%), Gaps = 2/264 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L TIA +QK G TCAF+DAEHALD IYA KLGVD+  LL+SQPDTGEQALEI D L R
Sbjct: 59  LTLETIAAAQKVGKTCAFIDAEHALDPIYAEKLGVDINQLLVSQPDTGEQALEIVDALAR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 119 SGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 178

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+P
Sbjct: 179 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAP 238

Query: 263 FKQVEFDIMYGEGISFFGELIDLG 286
           FKQ E  I+YG+G +  GELIDLG
Sbjct: 239 FKQAETQILYGQGFNRNGELIDLG 262


>gi|15605382|ref|NP_220168.1| recombinase A [Chlamydia trachomatis D/UW-3/CX]
 gi|290463282|sp|P0CD80|RECA_CHLTR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|3329099|gb|AAC68827.1| hypothetical protein CT_650 [Chlamydia trachomatis D/UW-3/CX]
 gi|296436189|gb|ADH18363.1| recombinase A [Chlamydia trachomatis G/9768]
 gi|296437118|gb|ADH19288.1| recombinase A [Chlamydia trachomatis G/11222]
 gi|296438049|gb|ADH20210.1| recombinase A [Chlamydia trachomatis G/11074]
 gi|297140551|gb|ADH97309.1| recombinase A [Chlamydia trachomatis G/9301]
          Length = 352

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/323 (56%), Positives = 251/323 (77%), Gaps = 2/323 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M++ D+ +ALEAA++ I++ +G G+IM LG   S  E I  + +G+L LD+ALGIGG PK
Sbjct: 1   MSVPDRKRALEAAIAYIEKQFGAGSIMSLGKHSSAHE-ISTIKTGALSLDLALGIGGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEI+GPESSGKTTLA H +A +QK GG  A++DAEHALD  YA  +G ++ +L+ISQ
Sbjct: 60  GRIVEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPNYAALIGANINDLMISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GE AL I ++L RSGAVD+IVIDSVAAL P++E+EG++G+   G+QAR+MSQALRKL
Sbjct: 120 PDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGEIGDVHVGLQARMMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI- 245
           T++++R+    +FINQ+R KIGV FG+PETTTGG ALKFYSS+R+DIRR+GSIK  ++  
Sbjct: 180 TATLARTNTCAIFINQIREKIGVSFGNPETTTGGRALKFYSSIRIDIRRIGSIKGGENFD 239

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+ +VKV KNK+A PF+  EFDI++ EGIS  G +IDL V+ +I+DK G+WF+++ ++
Sbjct: 240 IGNRIKVKVAKNKLAPPFRTAEFDILFNEGISSAGCIIDLAVEKNIIDKKGSWFNYQDRK 299

Query: 306 LGQGRENSKIFLRENIEIAENIE 328
           LGQGRE  +  L+ N E+   +E
Sbjct: 300 LGQGREAVREELKRNKELFHELE 322


>gi|166153991|ref|YP_001654109.1| recombinase A [Chlamydia trachomatis 434/Bu]
 gi|166154866|ref|YP_001653121.1| recombinase A [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|255349037|ref|ZP_05381044.1| recombinase A [Chlamydia trachomatis 70]
 gi|255503575|ref|ZP_05381965.1| recombinase A [Chlamydia trachomatis 70s]
 gi|255507255|ref|ZP_05382894.1| recombinase A [Chlamydia trachomatis D(s)2923]
 gi|301335189|ref|ZP_07223433.1| recombinase A [Chlamydia trachomatis L2tet1]
 gi|238687395|sp|B0B8M5|RECA_CHLT2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238687443|sp|B0BAA4|RECA_CHLTB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|557482|gb|AAA75588.1| RecA [Chlamydia trachomatis]
 gi|571502|gb|AAA74947.1| RecA [Chlamydia trachomatis]
 gi|607061|emb|CAA83539.1| recA [Chlamydia trachomatis]
 gi|165929979|emb|CAP03462.1| recombinase A [Chlamydia trachomatis 434/Bu]
 gi|165930854|emb|CAP06416.1| recombinase A [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|289525693|emb|CBJ15174.1| recombinase A [Chlamydia trachomatis Sweden2]
 gi|296435262|gb|ADH17440.1| recombinase A [Chlamydia trachomatis E/150]
 gi|296438981|gb|ADH21134.1| recombinase A [Chlamydia trachomatis E/11023]
          Length = 352

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/323 (56%), Positives = 251/323 (77%), Gaps = 2/323 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M++ D+ +ALEAA++ I++ +G G+IM LG   S  E I  + +G+L LD+ALGIGG PK
Sbjct: 1   MSVPDRKRALEAAIAYIEKQFGAGSIMSLGKHSSAHE-ISTIKTGALSLDLALGIGGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEI+GPESSGKTTLA H +A +QK GG  A++DAEHALD  YA  +G ++ +L+ISQ
Sbjct: 60  GRIVEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPNYAALIGANINDLMISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GE AL I ++L RSGAVD+IVIDSVAAL P++E+EG++G+   G+QAR+MSQALRKL
Sbjct: 120 PDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGEIGDVHVGLQARMMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI- 245
           T++++R+    +FINQ+R KIGV FG+PETTTGG ALKFYSS+R+DIRR+GSIK  ++  
Sbjct: 180 TATLARTNTCAIFINQIREKIGVSFGNPETTTGGRALKFYSSIRIDIRRIGSIKGGENFD 239

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+ +VKV KNK+A PF+  EFDI++ EGIS  G +IDL V+ +I+DK G+WF+++ ++
Sbjct: 240 IGNRIKVKVAKNKLAPPFRTAEFDILFNEGISSAGCIIDLAVEKNIIDKKGSWFNYQDRK 299

Query: 306 LGQGRENSKIFLRENIEIAENIE 328
           LGQGRE  +  L+ N E+   +E
Sbjct: 300 LGQGREAVREELKRNKELFHELE 322


>gi|297748780|gb|ADI51326.1| Reca [Chlamydia trachomatis D-EC]
 gi|297749660|gb|ADI52338.1| Reca [Chlamydia trachomatis D-LC]
          Length = 386

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/323 (56%), Positives = 251/323 (77%), Gaps = 2/323 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M++ D+ +ALEAA++ I++ +G G+IM LG   S  E I  + +G+L LD+ALGIGG PK
Sbjct: 35  MSVPDRKRALEAAIAYIEKQFGAGSIMSLGKHSSAHE-ISTIKTGALSLDLALGIGGVPK 93

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEI+GPESSGKTTLA H +A +QK GG  A++DAEHALD  YA  +G ++ +L+ISQ
Sbjct: 94  GRIVEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPNYAALIGANINDLMISQ 153

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GE AL I ++L RSGAVD+IVIDSVAAL P++E+EG++G+   G+QAR+MSQALRKL
Sbjct: 154 PDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGEIGDVHVGLQARMMSQALRKL 213

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI- 245
           T++++R+    +FINQ+R KIGV FG+PETTTGG ALKFYSS+R+DIRR+GSIK  ++  
Sbjct: 214 TATLARTNTCAIFINQIREKIGVSFGNPETTTGGRALKFYSSIRIDIRRIGSIKGGENFD 273

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+ +VKV KNK+A PF+  EFDI++ EGIS  G +IDL V+ +I+DK G+WF+++ ++
Sbjct: 274 IGNRIKVKVAKNKLAPPFRTAEFDILFNEGISSAGCIIDLAVEKNIIDKKGSWFNYQDRK 333

Query: 306 LGQGRENSKIFLRENIEIAENIE 328
           LGQGRE  +  L+ N E+   +E
Sbjct: 334 LGQGREAVREELKRNKELFHELE 356


>gi|195537265|dbj|BAG68221.1| recombinase A [Glaciibacter superstes]
 gi|195537267|dbj|BAG68222.1| recombinase A [Glaciibacter superstes]
          Length = 273

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/275 (68%), Positives = 223/275 (81%), Gaps = 2/275 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           +M+LGS       +E +S+GS+ LD+ALG+GG P+GRIVEIYGPESSGKTTL LH IA +
Sbjct: 1   VMRLGSDDR--APVETISTGSIALDVALGVGGLPRGRIVEIYGPESSGKTTLTLHAIANA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DMLVRSG++D+IVI
Sbjct: 59  QKNGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIADMLVRSGSIDLIVI 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  +S++   ++FINQ+R KIGV F
Sbjct: 119 DSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLSQTNTTMIFINQLREKIGVFF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           GSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA PFKQ EFDI+
Sbjct: 179 GSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKMAPPFKQAEFDII 238

Query: 272 YGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           YG GIS  G LID GV   IV KSGAW+++ G +L
Sbjct: 239 YGIGISREGSLIDFGVDHGIVKKSGAWYTYDGDQL 273


>gi|312143612|ref|YP_003995058.1| recA protein [Halanaerobium sp. 'sapolanicus']
 gi|311904263|gb|ADQ14704.1| recA protein [Halanaerobium sp. 'sapolanicus']
          Length = 345

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/331 (58%), Positives = 261/331 (78%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   DK KAL+ A+ +I++ +GKG+IM+LG   S+   +E + +G+L LD+ALG+GG P+
Sbjct: 1   MATKDKEKALDQAVKRIEKQFGKGSIMKLGEASSL--NVEAIPTGALPLDLALGVGGIPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E+YG ESSGKTTL LH IA++QK  G  AF+DAEHALD  YA+ LGV++ NLLISQ
Sbjct: 59  GRIIELYGNESSGKTTLGLHIIAEAQKLDGIAAFIDAEHALDPKYAKNLGVNIDNLLISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+GE+ALEI + LVRS A+D+++IDSVAAL P+AE+EGDMG+S  G+QARLMSQA+RKL
Sbjct: 119 PDSGEEALEIAEALVRSNAIDLVIIDSVAALVPKAELEGDMGDSHMGLQARLMSQAMRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + +IS+S   ++FINQ+R KIGVMFG+PETT GG ALKFYSSVR+++RR  +IKD D + 
Sbjct: 179 SGAISKSHTAIIFINQIREKIGVMFGNPETTPGGRALKFYSSVRIEMRRSQTIKDGDKLI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G+  +VKVVKNK+A+PF+  EFDIMYG GIS  G ++DLGV   IVD++G+W+S+   RL
Sbjct: 239 GSTAKVKVVKNKVAAPFRSAEFDIMYGTGISRSGCVLDLGVDTGIVDRAGSWYSYGDVRL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQGR+NSK FL++N +I   I+  +R   GL
Sbjct: 299 GQGRQNSKEFLQDNPDILNEIDEKIRVKVGL 329


>gi|110264743|gb|ABG56947.1| recA protein [Photobacterium kishitanii]
 gi|110264749|gb|ABG56950.1| recA protein [Photobacterium kishitanii]
 gi|110264753|gb|ABG56952.1| recA protein [Photobacterium kishitanii]
 gi|110264755|gb|ABG56953.1| recA protein [Photobacterium kishitanii]
 gi|110264773|gb|ABG56962.1| recA protein [Photobacterium kishitanii]
 gi|110264775|gb|ABG56963.1| recA protein [Photobacterium kishitanii]
 gi|110264777|gb|ABG56964.1| recA protein [Photobacterium kishitanii]
 gi|110264783|gb|ABG56967.1| recA protein [Photobacterium kishitanii]
 gi|110264787|gb|ABG56969.1| recA protein [Photobacterium kishitanii]
 gi|156067107|gb|ABR12775.2| recombinase A [Photobacterium kishitanii]
 gi|156067113|gb|ABR12778.2| recombinase A [Photobacterium kishitanii]
 gi|156067127|gb|ABR12785.2| recombinase A [Photobacterium kishitanii]
 gi|156067149|gb|ABR12796.2| recombinase A [Photobacterium kishitanii]
 gi|156067151|gb|ABR12797.2| recombinase A [Photobacterium kishitanii]
          Length = 262

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/264 (69%), Positives = 224/264 (84%), Gaps = 2/264 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L TIA +QK G TCAF+DAEHALD IYA KLGVD+  LL+SQPDTGEQALEI D L R
Sbjct: 59  LTLETIAAAQKVGKTCAFIDAEHALDPIYAEKLGVDINQLLVSQPDTGEQALEIVDALAR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 119 SGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 178

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+P
Sbjct: 179 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAP 238

Query: 263 FKQVEFDIMYGEGISFFGELIDLG 286
           FKQ E  I+YG+G +  GELIDLG
Sbjct: 239 FKQAETQILYGQGFNRNGELIDLG 262


>gi|223635953|emb|CAQ03778.1| recombination-repair protein [Enterovibrio calviensis]
          Length = 249

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 182/242 (75%), Positives = 213/242 (88%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  +A++QK G TCAF+DAE
Sbjct: 8   IETVSTGSLSLDIALGAGGLPFGRIVEIYGPESSGKTTLTLQVVAEAQKAGKTCAFIDAE 67

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA KLGVD+ NLL+SQPDTGEQALEI D L RSGAVD+I+IDSVAALTP+AEIE
Sbjct: 68  HALDPVYAGKLGVDIDNLLVSQPDTGEQALEIADALTRSGAVDVIIIDSVAALTPKAEIE 127

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT++I  S  +++FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 128 GEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIGVMFGNPETTTGGNALK 187

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR+GSIK+ D I GN TRVKVVKNK+A+PFKQ EF IMYGEGI+ +GELID
Sbjct: 188 FYASVRLDIRRIGSIKEGDEIVGNDTRVKVVKNKIAAPFKQAEFQIMYGEGINLYGELID 247

Query: 285 LG 286
           LG
Sbjct: 248 LG 249


>gi|116629966|ref|YP_815138.1| recombinase A [Lactobacillus gasseri ATCC 33323]
 gi|238854070|ref|ZP_04644420.1| protein RecA [Lactobacillus gasseri 202-4]
 gi|116095548|gb|ABJ60700.1| RecA protein [Lactobacillus gasseri ATCC 33323]
 gi|238833304|gb|EEQ25591.1| protein RecA [Lactobacillus gasseri 202-4]
          Length = 364

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/332 (56%), Positives = 260/332 (78%), Gaps = 2/332 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+ AL +I++ +GKGA+M++G +  +   I  + SGSL LD ALG+GG+P+GRI+
Sbjct: 5   DKKKALDIALKKIEKDFGKGAVMRMGEK--VDTQISTIPSGSLALDAALGVGGYPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQP+TG
Sbjct: 63  EVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+GDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 123 EEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGDMGDSHVGLQARLMSQALRKLSGNI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++K I VFINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK    + GN+ 
Sbjct: 183 SKTKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQGSDVIGNRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GELID+     I+ K+G+W+S+   R+GQGR
Sbjct: 243 KLKVVKNKVAPPFKVAEVDIMYGKGISQTGELIDMAADKDIIKKAGSWYSYGDDRIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL 342
           EN+K +L E+ ++ + ++  +R+  G+ A ++
Sbjct: 303 ENAKQYLEEHPDVYDEVKEKVRKAYGIDAKAI 334


>gi|257466664|ref|ZP_05630975.1| recombinase A [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917818|ref|ZP_07914058.1| recombinase A [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691693|gb|EFS28528.1| recombinase A [Fusobacterium gonidiaformans ATCC 25563]
          Length = 359

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/318 (59%), Positives = 243/318 (76%), Gaps = 3/318 (0%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
            K + +  K KALE A+ +I + +G+GAIM+LG    +   IEV+ +GSL LD ALG+GG
Sbjct: 6   EKTVELTAKQKALETAVKEITKDFGEGAIMKLGDNSHM--QIEVIPTGSLNLDAALGLGG 63

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P+GR+VEIYG ESSGKTT+ALH IA++QK GG  AF+DAEHALD +YA+ LGVD+  LL
Sbjct: 64  VPRGRVVEIYGAESSGKTTIALHIIAEAQKMGGIAAFIDAEHALDPVYAKALGVDIDELL 123

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           ISQPD GEQAL+I D LVRSGA+D+IV+DSVAAL P+ EI+G+M +   G+QARLMS+AL
Sbjct: 124 ISQPDFGEQALDIADTLVRSGAIDVIVVDSVAALVPKVEIDGEMSDQQMGLQARLMSKAL 183

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           RKLT+++++SK  ++FINQ+R KIG   FG   TTTGG ALKFYSSVR++++R+ S+K  
Sbjct: 184 RKLTATLNKSKTTMIFINQIREKIGGFGFGPQTTTTGGKALKFYSSVRMEVKRIASVKQG 243

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           D + GN+T VKV KNK+A PFK+  F IMYG+GIS  GE++D+ +   IV KSGAWFSF 
Sbjct: 244 DDVIGNETVVKVTKNKIAPPFKEASFQIMYGKGISKVGEILDIALAKDIVAKSGAWFSFG 303

Query: 303 GQRLGQGRENSKIFLREN 320
             RLGQG+EN K  L E 
Sbjct: 304 EIRLGQGKENVKARLEEE 321


>gi|17230764|ref|NP_487312.1| recombinase A [Nostoc sp. PCC 7120]
 gi|20139390|sp|P58552|RECA_NOSS1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|17132367|dbj|BAB74971.1| recombination protein [Nostoc sp. PCC 7120]
          Length = 357

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/322 (60%), Positives = 250/322 (77%), Gaps = 3/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL   L+QI+R +GKGAIM+LG    +   +E +S+G+L LD+ALG GG PKGR++E
Sbjct: 10  KQKALTMVLNQIERSFGKGAIMRLGDATRMR--VETISTGALTLDLALG-GGLPKGRVIE 66

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH IA+ QK GG  AFVDAEHALD  YA  LGVD++NLL+SQPDTGE
Sbjct: 67  IYGPESSGKTTVALHAIAEVQKEGGIAAFVDAEHALDPTYASALGVDIQNLLVSQPDTGE 126

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
            ALEI D LVRS AVDI+VIDSVAAL PRAEIEGDMG++  G+QARLMSQALRK+T +I 
Sbjct: 127 SALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKITGNIG 186

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S C ++FINQ+R KIGV +GSPETTTGGNALKFY+SVRLDIRR+ ++K      GN+ +
Sbjct: 187 KSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGTDEFGNRVK 246

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV KNK+A PF+  EFDI++G+G+S  G L+DL  +  I+ + GAW+S+ G  + QGR+
Sbjct: 247 VKVAKNKVAPPFRIAEFDIIFGKGVSTLGCLVDLAEETGILIRKGAWYSYNGDNISQGRD 306

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
           N+  +L E  E +E I+  +R+
Sbjct: 307 NAIKYLEEKPEFSEQIKQQVRE 328


>gi|58415612|emb|CAH57220.1| recA protein [Vibrio pectenicida]
 gi|58415614|emb|CAH57221.1| recA protein [Vibrio pectenicida]
 gi|58415616|emb|CAH57222.1| recA protein [Vibrio pectenicida]
          Length = 265

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 182/267 (68%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIKD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYG+G +  GELIDLGVK  +++K+GA
Sbjct: 239 MYGQGFNREGELIDLGVKHKLIEKAGA 265


>gi|58415493|emb|CAH57161.1| recA protein [Vibrio halioticoli]
          Length = 265

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 182/267 (68%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA 
Sbjct: 1   SIMKLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLEVIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGAVD+IV
Sbjct: 59  AQKQGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEICDALARSGAVDVIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QARL+SQ++RK+T ++  S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARLLSQSMRKMTGNLKASNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G++K+ D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G + +GELIDLGVK  +VDK+GA
Sbjct: 239 LYGKGFNRYGELIDLGVKHKLVDKAGA 265


>gi|119512651|ref|ZP_01631726.1| recombination protein [Nodularia spumigena CCY9414]
 gi|119462722|gb|EAW43684.1| recombination protein [Nodularia spumigena CCY9414]
          Length = 356

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/322 (60%), Positives = 248/322 (77%), Gaps = 3/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL   L+QI+R +GKGAIM+LG    +   +E +S+G+L LD+ALG GG PKGR++E
Sbjct: 10  KEKALNIVLNQIERSFGKGAIMRLGDATRMR--VETISTGALTLDLALG-GGLPKGRVIE 66

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH +A+ QK GG  AFVDAEHALD  YA  LGVD++NLL+SQPDTGE
Sbjct: 67  IYGPESSGKTTVALHALAEVQKNGGVAAFVDAEHALDPTYAAALGVDIENLLVSQPDTGE 126

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
            ALEI D LVRS AVDI+VIDSVAAL PRAEIEGDMG+   G+QARLMSQALRK+T +I 
Sbjct: 127 SALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEGDMGDIHVGLQARLMSQALRKITGNIG 186

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S C ++FINQ+R KIG+ +GSPETTTGGNALKFY+SVRLDIRR+ ++K      GN+ +
Sbjct: 187 KSGCTVIFINQLRQKIGITYGSPETTTGGNALKFYASVRLDIRRIQTLKKGTEEFGNRVK 246

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV KNK+A PF+  EFDI++G+G+S  G L+DL  +  I+ + GAW+S+ G  + QGR+
Sbjct: 247 VKVAKNKVAPPFRVAEFDIIFGKGVSTLGCLVDLAEETGIIVRKGAWYSYNGDNISQGRD 306

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
           N+  +L E  E    I+ L+RQ
Sbjct: 307 NAIKYLEEKPEFTAEIKELVRQ 328


>gi|37522985|ref|NP_926362.1| recombinase A [Gloeobacter violaceus PCC 7421]
 gi|60393011|sp|Q7NFV8|RECA_GLOVI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|35213988|dbj|BAC91357.1| recombination protein [Gloeobacter violaceus PCC 7421]
          Length = 369

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/323 (60%), Positives = 256/323 (79%), Gaps = 3/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+  L+QI+R +G+GAIM+LG    I   +E V SG++ LD+ALG GG P+GR++E
Sbjct: 23  KQKALKMVLTQIKRNFGEGAIMRLGENTRIR--VETVPSGAITLDLALG-GGLPRGRVIE 79

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH IA+ QKTGG  AFVDAEHALD  YA+ LGV++ +L+ISQPDTGE
Sbjct: 80  IYGPESSGKTTLALHAIAEIQKTGGVAAFVDAEHALDPAYAKVLGVNVDDLIISQPDTGE 139

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
            A+EI D LVRS A+D+IVIDSVAAL PRAEIEG+MG++  G+QARLMSQALRK+T +I 
Sbjct: 140 MAMEIVDQLVRSAAIDVIVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKITGNIG 199

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++ C+++F+NQ+R KIGVM+G+PETTTGGNALKFY+SVRLDIR+  ++K      GN+ R
Sbjct: 200 KTGCMVIFLNQLRSKIGVMYGNPETTTGGNALKFYASVRLDIRKAETLKKGQDEYGNRVR 259

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF++ EFDI++G+GIS  G ++DL V+  IV++ GAW+S+  +RLGQGRE
Sbjct: 260 VKVVKNKVAPPFRKAEFDIIFGKGISSLGCILDLAVEMEIVERKGAWYSYGSERLGQGRE 319

Query: 312 NSKIFLRENIEIAENIESLLRQN 334
           N    L EN   A+ IE  +R+ 
Sbjct: 320 NVLALLEENAAQAQEIEIKVREK 342


>gi|58415357|emb|CAH57093.1| recA protein [Photobacterium leiognathi subsp. leiognathi]
          Length = 265

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/267 (68%), Positives = 227/267 (85%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L TIA 
Sbjct: 1   SIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLETIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGAVD+IV
Sbjct: 59  AQRKGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEICDALARSGAVDLIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ +  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKQADTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GEL+DLGVK  +V+K+GA
Sbjct: 239 LYGQGFNRNGELVDLGVKHKLVEKAGA 265


>gi|52630813|gb|AAU84874.1| RecA [Burkholderia glumae]
          Length = 242

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/242 (75%), Positives = 215/242 (88%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  
Sbjct: 1   GSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQ 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+S
Sbjct: 61  YAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDS 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
           LPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR
Sbjct: 121 LPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVR 180

Query: 231 LDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS 290
           LDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A 
Sbjct: 181 LDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRESIFDILYGEGISRQGEIIDLGVQAK 240

Query: 291 IV 292
           IV
Sbjct: 241 IV 242


>gi|54792491|emb|CAE45625.1| recombination-repair protein [Vibrio mediterranei]
          Length = 259

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 181/261 (69%), Positives = 224/261 (85%), Gaps = 2/261 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +QK G TCAF+DAEHALD IYA+KLGVD+ +LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  CIAAAQKQGKTCAFIDAEHALDPIYAKKLGVDIDSLLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELIDLGV 287
           E  I+YG+G + +GELIDLGV
Sbjct: 239 ETQILYGQGFNRYGELIDLGV 259


>gi|58415604|emb|CAH57216.1| recA protein [Vibrio pacinii]
          Length = 265

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/267 (68%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIKD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 LYGQGFNREGELIDLGVKHKLVEKAGA 265


>gi|284044699|ref|YP_003395039.1| recA protein [Conexibacter woesei DSM 14684]
 gi|283948920|gb|ADB51664.1| recA protein [Conexibacter woesei DSM 14684]
          Length = 360

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/317 (59%), Positives = 257/317 (81%), Gaps = 1/317 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL+QI+R +GKG +M++G  G+    +  + +G+L LD+ALGIGG P+GRIVE
Sbjct: 11  RDAALQGALTQIERQFGKGTVMRMGDPGARVR-VNAIPTGALSLDLALGIGGVPRGRIVE 69

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           ++GPESSGKTTL  H IA++Q+ GG CAF+DAEHA+D +YA+++GV++ +LL+SQPD GE
Sbjct: 70  VFGPESSGKTTLVYHIIAEAQRLGGVCAFIDAEHAMDPLYAQRIGVNIDDLLVSQPDYGE 129

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALE+ DMLVRSGAVD++ +DSVAALTPRAE+EG MG+   G+QAR+MSQA+RKLT++++
Sbjct: 130 QALEVADMLVRSGAVDMVAVDSVAALTPRAELEGAMGDQTVGVQARMMSQAMRKLTANLN 189

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           R++ + +F NQ+R K+GVMFGSPET  GG ALKFYSS RLDIRR+ ++KD     GN+ R
Sbjct: 190 RTQTMCLFTNQIREKVGVMFGSPETQPGGRALKFYSSQRLDIRRIETLKDGTEAVGNRVR 249

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PFKQ EFDI +G+GIS  G LID G++ +IV KSG++FS+  +RLGQGR 
Sbjct: 250 VKVVKNKVAPPFKQAEFDIEFGQGISTEGCLIDYGIEHNIVTKSGSFFSYGDERLGQGRN 309

Query: 312 NSKIFLRENIEIAENIE 328
           N+K +L+E+ E+A+ IE
Sbjct: 310 NAKNYLKEHGEVAKEIE 326


>gi|282851429|ref|ZP_06260794.1| RecA protein [Lactobacillus gasseri 224-1]
 gi|282557397|gb|EFB62994.1| RecA protein [Lactobacillus gasseri 224-1]
          Length = 342

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/332 (56%), Positives = 260/332 (78%), Gaps = 2/332 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+ AL +I++ +GKGA+M++G +  +   I  + SGSL LD ALG+GG+P+GRI+
Sbjct: 5   DKKKALDIALKKIEKDFGKGAVMRMGEK--VDTQISTIPSGSLALDAALGVGGYPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQP+TG
Sbjct: 63  EVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+GDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 123 EEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGDMGDSHVGLQARLMSQALRKLSGNI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++K I VFINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK    + GN+ 
Sbjct: 183 SKTKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQGSDVIGNRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GELID+     I+ K+G+W+S+   R+GQGR
Sbjct: 243 KLKVVKNKVAPPFKVAEVDIMYGKGISQTGELIDMAADKDIIKKAGSWYSYGDDRIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL 342
           EN+K +L E+ ++ + ++  +R+  G+ A ++
Sbjct: 303 ENAKQYLEEHPDVYDEVKEKVRKAYGIDAKAI 334


>gi|223986387|ref|ZP_03636393.1| hypothetical protein HOLDEFILI_03705 [Holdemania filiformis DSM
           12042]
 gi|223961629|gb|EEF66135.1| hypothetical protein HOLDEFILI_03705 [Holdemania filiformis DSM
           12042]
          Length = 343

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/323 (58%), Positives = 257/323 (79%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K   L+  L QI++ YGKG+IM+LG + ++   I+ +SSGS+ +D ALGIGG+PKGRI+
Sbjct: 7   NKDALLQDTLKQIEKQYGKGSIMKLGDRANV--DIDAISSGSIAIDYALGIGGYPKGRII 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH IA+ QK GG  AF+DAE+A+D +YA+ LGV + +L++SQPD+G
Sbjct: 65  EIYGPESSGKTTLALHAIAECQKAGGRAAFIDAENAIDPMYAKNLGVKIDDLILSQPDSG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ML++SGA+D+IVIDSVAAL P+AE++G+MG+S  G+QARLMS+A+RKL   +
Sbjct: 125 EQALEITEMLIKSGAIDLIVIDSVAALVPQAELDGEMGDSQVGLQARLMSKAMRKLAGVM 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +RS+C  +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+RR  +IK+   I GN+ 
Sbjct: 185 NRSQCTAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRRSEAIKNGSEIVGNKV 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
            VKVVKNK+A PFK    +IMYGEGIS  GE++ LG    I++KSGAW+S+ G+++GQGR
Sbjct: 245 NVKVVKNKVAPPFKVAAIEIMYGEGISHIGEVVSLGESFEIINKSGAWYSYNGEKIGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           E  + FL+ N ++ E I + ++ 
Sbjct: 305 EAVRAFLKANPQLDEEITAKIKH 327


>gi|86605782|ref|YP_474545.1| recombinase A [Synechococcus sp. JA-3-3Ab]
 gi|86554324|gb|ABC99282.1| recA protein [Synechococcus sp. JA-3-3Ab]
          Length = 358

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/325 (57%), Positives = 253/325 (77%), Gaps = 4/325 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+  L QI+R +GKGAIM+LG    +   +E + SG++ LD+A+G GG+PKGRI+
Sbjct: 4   EKRKALDQVLGQIERNFGKGAIMRLGDAAQMR--VETIPSGAITLDLAMG-GGYPKGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E++GPESSGKT++ALH IA+ QK GGT AFVDAEHALD  YA  LGVD++NLLISQPDTG
Sbjct: 61  EVFGPESSGKTSVALHAIAEVQKRGGTAAFVDAEHALDPAYAAALGVDIQNLLISQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D LVRS AVDI+V+DSVAAL PRAEIEGDMG++  G+QARLMSQALRK+  ++
Sbjct: 121 EAALEIVDQLVRSAAVDIVVVDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKIAGNV 180

Query: 191 SRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           S++  I++F+NQ+R KI G+ +G  ETTTGGNALKFY+SVRLDIRRV ++K      G +
Sbjct: 181 SKTGSIVLFLNQLRSKIGGIGYGLQETTTGGNALKFYASVRLDIRRVQTLKKGAEEYGIR 240

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            RVKVVKNK+A PF++ EFDI++G+GIS  G ++DL  +  I+ + G+W+S+K + + QG
Sbjct: 241 ARVKVVKNKVAPPFRRAEFDIIFGQGISNIGCIVDLAEEMGILKRRGSWYSYKEENVAQG 300

Query: 310 RENSKIFLRENIEIAENIESLLRQN 334
           R+N  ++L+E  EI   +E+ +R+ 
Sbjct: 301 RDNLVVYLKEKPEILAEVEAAVREK 325


>gi|260656832|gb|ACX47806.1| recombinase A [Vibrio casei]
          Length = 265

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 182/267 (68%), Positives = 227/267 (85%), Gaps = 2/267 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  I
Sbjct: 1   KGSIMKLGDNRTM--DVETISTGSLALDIALGAGGLPMGRIVEVYGPESSGKTTLTLELI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGV++ +LL+SQPDTGEQALEI D L RSGA+D+
Sbjct: 59  AAAQRVGKTCAFIDAEHALDPIYAQKLGVNINDLLVSQPDTGEQALEICDALARSGAIDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG
Sbjct: 119 LVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFGSPETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E 
Sbjct: 179 VMFGSPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAET 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKS 295
            I+YG+G +  GELIDLGVK  +V+K+
Sbjct: 239 QILYGKGFNREGELIDLGVKNKLVEKA 265


>gi|58415439|emb|CAH57134.1| recA protein [Vibrio cyclitrophicus]
 gi|58415479|emb|CAH57154.1| recA protein [Vibrio fortis]
 gi|58415530|emb|CAH57179.1| recA protein [Vibrio kanaloae]
 gi|58415532|emb|CAH57180.1| recA protein [Vibrio kanaloae]
 gi|58415534|emb|CAH57181.1| recA protein [Vibrio lentus]
 gi|58415538|emb|CAH57183.1| recA protein [Vibrio lentus]
 gi|58415540|emb|CAH57184.1| recA protein [Vibrio lentus]
 gi|58415626|emb|CAH57227.1| recA protein [Vibrio pomeroyi]
 gi|58415646|emb|CAH57237.1| recA protein [Vibrio splendidus]
 gi|58415648|emb|CAH57238.1| recA protein [Vibrio splendidus]
 gi|58415650|emb|CAH57239.1| recA protein [Vibrio splendidus]
 gi|290795190|gb|ADD64609.1| RecA recombinase [Vibrio cyclitrophicus]
          Length = 265

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/267 (68%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 LYGKGFNREGELIDLGVKNKLVEKAGA 265


>gi|58415463|emb|CAH57146.1| recA protein [Aliivibrio fischeri]
 gi|58415465|emb|CAH57147.1| recA protein [Aliivibrio fischeri]
 gi|110264721|gb|ABG56936.1| recA protein [Aliivibrio fischeri]
 gi|110264723|gb|ABG56937.1| recA protein [Aliivibrio fischeri]
 gi|110264725|gb|ABG56938.1| recA protein [Aliivibrio fischeri]
 gi|110264727|gb|ABG56939.1| recA protein [Aliivibrio fischeri]
 gi|110264729|gb|ABG56940.1| recA protein [Aliivibrio fischeri]
 gi|110264731|gb|ABG56941.1| recA protein [Aliivibrio fischeri]
 gi|148536402|gb|ABQ85753.1| RecA [Aliivibrio fischeri]
 gi|148536404|gb|ABQ85754.1| RecA [Aliivibrio fischeri]
 gi|148536406|gb|ABQ85755.1| RecA [Aliivibrio fischeri]
 gi|156025123|gb|ABR12764.2| recombinase A [Aliivibrio fischeri]
 gi|164608450|gb|ABY62528.1| recombinase A [Aliivibrio fischeri]
          Length = 265

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/267 (68%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA 
Sbjct: 1   SIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD++V
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYG+G +  GELIDLGVK  +VDK+GA
Sbjct: 239 MYGQGFNREGELIDLGVKHKLVDKAGA 265


>gi|290795177|gb|ADD64603.1| RecA recombinase [Vibrio cyclitrophicus]
 gi|290795179|gb|ADD64604.1| RecA recombinase [Vibrio cyclitrophicus]
 gi|290795181|gb|ADD64605.1| RecA recombinase [Vibrio cyclitrophicus]
 gi|290795183|gb|ADD64606.1| RecA recombinase [Vibrio cyclitrophicus]
 gi|290795185|gb|ADD64607.1| RecA recombinase [Vibrio cyclitrophicus]
          Length = 264

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/266 (69%), Positives = 225/266 (84%), Gaps = 2/266 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +
Sbjct: 1   IMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VI
Sbjct: 59  QKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVI 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMF
Sbjct: 119 DSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I+
Sbjct: 179 GNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQIL 238

Query: 272 YGEGISFFGELIDLGVKASIVDKSGA 297
           YG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 YGKGFNREGELIDLGVKNKLVEKAGA 264


>gi|154249970|ref|YP_001410795.1| recombinase A [Fervidobacterium nodosum Rt17-B1]
 gi|154153906|gb|ABS61138.1| recA protein [Fervidobacterium nodosum Rt17-B1]
          Length = 357

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/339 (54%), Positives = 253/339 (74%), Gaps = 6/339 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K   L+ A+S+I++ YGKG+IM LG +G++ + I+V+ SGSL +DIA G+GG+P+GRI+E
Sbjct: 6   KKDVLKKAISKIEKTYGKGSIMVLG-EGNLVQEIDVIPSGSLAIDIASGVGGYPRGRIIE 64

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH IA  QK GG  AFVDAEHALD  YA+ LG+DL  LL+SQPD GE
Sbjct: 65  IYGPESSGKTTIALHAIASVQKLGGIAAFVDAEHALDLNYAKNLGIDLSELLVSQPDYGE 124

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL+I D LVRS AVD+IV+DSVAAL PRAEIEG MG++  G+QARLMSQALRKL  +++
Sbjct: 125 QALDIVDELVRSNAVDLIVVDSVAALVPRAEIEGAMGDAQIGLQARLMSQALRKLAGNVN 184

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +SK +++FINQ RMKIGVM+G+PETTTGG ALKFY+++R+++R  G I + +   GN+  
Sbjct: 185 KSKVVVIFINQTRMKIGVMYGNPETTTGGVALKFYATMRIEVRSAGKIVEGNEHIGNEVN 244

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF-----KGQRL 306
           +K VKNK+A PF+    DI+YG+GI    EL ++ V   ++D+ G+WF++     K   L
Sbjct: 245 IKFVKNKVAPPFRTASVDIIYGKGIVRENELFNIAVNEGLIDRRGSWFTYEDLSGKEHSL 304

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           GQG+ N+  +L E+ E+A+ IE  +R+      D + QE
Sbjct: 305 GQGKSNAVNYLVEHSEVADEIEKRIREKYLAKPDQVSQE 343


>gi|297622180|ref|YP_003710317.1| bacterial DNA recombination protein recA [Waddlia chondrophila WSU
           86-1044]
 gi|297377481|gb|ADI39311.1| bacterial DNA recombination protein recA [Waddlia chondrophila WSU
           86-1044]
          Length = 350

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/319 (60%), Positives = 254/319 (79%), Gaps = 2/319 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ A+S I++ +G+GAIM LGS+ S  E I V+ +G+L LD+ALGIGG P+GRIV
Sbjct: 8   ERKKALDLAVSHIKKQFGEGAIMSLGSRASQQE-IGVIKTGTLALDVALGIGGVPRGRIV 66

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGK+TLALH +A +QK+GG  A++DAEHALD  YA K+GV+++ LLISQPD G
Sbjct: 67  EIYGPESSGKSTLALHIVANAQKSGGLAAYIDAEHALDPSYATKIGVNIEELLISQPDCG 126

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+AL I + L RS AVD+I+IDSVAAL P++E+EG++G+S  G+QAR+MSQALRKLT+++
Sbjct: 127 EEALNIAETLARSNAVDVIIIDSVAALVPKSELEGEIGDSFVGLQARMMSQALRKLTATL 186

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI-TGNQ 249
           +RS    VFINQ+R KIGVM+G+PETTTGG ALKFYSSVR++IRR G IK  D+   GN+
Sbjct: 187 ARSNTCAVFINQIREKIGVMYGNPETTTGGRALKFYSSVRMEIRRTGGIKGPDNNEMGNR 246

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNKMA PF+  EFDI++ EGIS  G +ID+  +  I+DK GAWFS+KG RLGQG
Sbjct: 247 VKVKVVKNKMAPPFRAAEFDILFNEGISRTGSVIDMATEYQIIDKRGAWFSYKGDRLGQG 306

Query: 310 RENSKIFLRENIEIAENIE 328
           RE  +  L+ N ++ E IE
Sbjct: 307 REAVREQLKANKDLLEEIE 325


>gi|15834644|ref|NP_296403.1| recombinase A [Chlamydia muridarum Nigg]
 gi|270284810|ref|ZP_06194204.1| recombinase A [Chlamydia muridarum Nigg]
 gi|270288839|ref|ZP_06195141.1| recombinase A [Chlamydia muridarum Weiss]
 gi|301336190|ref|ZP_07224392.1| recombinase A [Chlamydia muridarum MopnTet14]
 gi|11387034|sp|Q9PLS6|RECA_CHLMU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|7190059|gb|AAF38911.1| recA protein [Chlamydia muridarum Nigg]
          Length = 354

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 181/323 (56%), Positives = 252/323 (78%), Gaps = 2/323 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M++ D+ +ALEAA++ I++ +G G+IM LG   S  E I  + +G+L LD+ALGIGG PK
Sbjct: 1   MSVPDRKRALEAAIAYIEKQFGAGSIMSLGKHSSAHE-ISTIKTGALSLDLALGIGGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTLA H +A +QK GG  A++DAEHALD  YA  +G ++ +L+ISQ
Sbjct: 60  GRIIEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPNYAALIGANINDLMISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GE AL I ++L RSGAVD+IVIDSVAAL P++E+EG++G+   G+QAR+MSQALRKL
Sbjct: 120 PDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGEIGDVHVGLQARMMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI- 245
           T++++R+    +FINQ+R KIGV FG+PETTTGG ALKFYSS+R+DIRR+G+IK  ++  
Sbjct: 180 TATLARTNTCAIFINQIREKIGVSFGNPETTTGGRALKFYSSIRMDIRRIGAIKGGENFD 239

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+ +VKV KNK+A PF+  EFDI++ EGIS  G +IDL V+ +I+DK G+WF+++ ++
Sbjct: 240 IGNRIKVKVAKNKLAPPFRTAEFDILFNEGISSAGCIIDLAVEKNIIDKKGSWFNYQDRK 299

Query: 306 LGQGRENSKIFLRENIEIAENIE 328
           LGQGRE  +  L+ N E+ + +E
Sbjct: 300 LGQGREAVREELKRNKELFQELE 322


>gi|282890378|ref|ZP_06298906.1| hypothetical protein pah_c016o106 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499760|gb|EFB42051.1| hypothetical protein pah_c016o106 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 357

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/335 (58%), Positives = 258/335 (77%), Gaps = 4/335 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ A+S I++ +G GAIM LGS  S+ E I V+ +G+L LD+ALGIGG P+GRI+
Sbjct: 8   ERKKALDLAVSHIKKQFGDGAIMSLGSHSSMRE-ISVIKTGALTLDVALGIGGIPRGRII 66

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGK+TLA H +A +QK GG  A++DAEHALD  YA K+GV++  LLISQPD+G
Sbjct: 67  EIFGPESSGKSTLATHIVANAQKAGGLAAYIDAEHALDPSYAAKIGVNVDELLISQPDSG 126

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+AL I + L RS AVD+IVIDSVAAL P++E+EG++G+S  G+QAR+MSQALRKL +++
Sbjct: 127 EEALNIAETLARSNAVDVIVIDSVAALVPKSELEGEIGDSFIGLQARMMSQALRKLAATL 186

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQ 249
           ++S    +FINQ+R KIGVMFG+PETTTGG ALKFYSS+RLDIRR   IK  D S  GN+
Sbjct: 187 AKSNTCAIFINQIREKIGVMFGNPETTTGGRALKFYSSIRLDIRRTAGIKGPDNSEVGNR 246

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PF+  EFDI++ EGIS  G +IDLG +  I+DK GAWFS++GQRLGQG
Sbjct: 247 VKVKVVKNKVAPPFRSAEFDILFNEGISRTGAVIDLGTEYQIIDKKGAWFSYQGQRLGQG 306

Query: 310 RENSKIFLRENIEIAENIESLLRQNA--GLVADSL 342
           RE  +  L+ N ++ + IE L+ Q    GL   SL
Sbjct: 307 REAVRDELKTNPKLLDEIEQLIMQKCKDGLATTSL 341


>gi|320539039|ref|ZP_08038713.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Serratia symbiotica str. Tucson]
 gi|320030879|gb|EFW12884.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Serratia symbiotica str. Tucson]
          Length = 294

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 174/257 (67%), Positives = 221/257 (85%)

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQP
Sbjct: 1   RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQP 60

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D L RSGA+D+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL 
Sbjct: 61  DTGEQALEICDALTRSGAIDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 120

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++  +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D + G
Sbjct: 121 GNLKNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDEVVG 180

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           ++TRVKVVKNK+A+PFKQ EF IMYGEGI+  GEL+DLGVK  +++K+GAW+S+ G+++G
Sbjct: 181 SETRVKVVKNKIAAPFKQAEFQIMYGEGINSRGELVDLGVKHKMIEKAGAWYSYNGEKIG 240

Query: 308 QGRENSKIFLRENIEIA 324
           QG+ N+  FL+EN  IA
Sbjct: 241 QGKANACNFLKENPAIA 257


>gi|300361272|ref|ZP_07057449.1| recombination protein A [Lactobacillus gasseri JV-V03]
 gi|300353891|gb|EFJ69762.1| recombination protein A [Lactobacillus gasseri JV-V03]
          Length = 354

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/327 (56%), Positives = 257/327 (78%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+ AL +I++ +GKGA+M++G +  +   I  + SGSL LD ALG+GG+P+GRI+
Sbjct: 5   DKKKALDIALKKIEKDFGKGAVMRMGEK--VDTQISTIPSGSLALDAALGVGGYPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQP+TG
Sbjct: 63  EVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+GDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 123 EEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGDMGDSHVGLQARLMSQALRKLSGNI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++K I VFINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK    + GN+ 
Sbjct: 183 SKTKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQGSDVIGNRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GELID+     I+ K+G+W+S+   R+GQGR
Sbjct: 243 KLKVVKNKVAPPFKVAEVDIMYGKGISQTGELIDMAADKDIIKKAGSWYSYGDDRIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K +L E+ ++ + ++  +R+  G+
Sbjct: 303 ENAKQYLEEHPDVYDEVKEKVRKAYGI 329


>gi|290795135|gb|ADD64582.1| RecA recombinase [Vibrio sp. FALF33]
          Length = 248

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 181/242 (74%), Positives = 213/242 (88%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+ VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  +A++QK G TCAF+DAE
Sbjct: 7   IDTVSTGSLSLDIALGAGGLPFGRIVEIYGPESSGKTTLTLQVVAEAQKIGKTCAFIDAE 66

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA KLGVD+ NLL+SQPDTGEQALEI D L RSGAVD+I+IDSVAALTP+AEIE
Sbjct: 67  HALDPVYAGKLGVDIDNLLVSQPDTGEQALEIADALTRSGAVDVIIIDSVAALTPKAEIE 126

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT++I  S  +++FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 127 GEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIGVMFGNPETTTGGNALK 186

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR+GSIK+ D I GN TRVKVVKNK+A+PFKQ EF IMYGEGI+ +GELID
Sbjct: 187 FYASVRLDIRRIGSIKEGDEIVGNDTRVKVVKNKIAAPFKQAEFQIMYGEGINLYGELID 246

Query: 285 LG 286
           LG
Sbjct: 247 LG 248


>gi|110264751|gb|ABG56951.1| recA protein [Photobacterium kishitanii]
          Length = 261

 Score =  385 bits (988), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/263 (69%), Positives = 223/263 (84%), Gaps = 2/263 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTL 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L TIA +QK G TCAF+DAEHALD IYA KLGVD+  LL+SQPDTGEQALEI D L RS
Sbjct: 59  TLETIAAAQKVGKTCAFIDAEHALDPIYAEKLGVDINQLLVSQPDTGEQALEIVDALARS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+
Sbjct: 119 GAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PF
Sbjct: 179 RMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLG 286
           KQ E  I+YG+G +  GELIDLG
Sbjct: 239 KQAETQILYGQGFNRNGELIDLG 261


>gi|52630777|gb|AAU84856.1| RecA [Pandoraea apista]
          Length = 248

 Score =  385 bits (988), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 181/245 (73%), Positives = 216/245 (88%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+VVS+GSLGLDIALG+GG P+GR++EIYGPESSGKTTL L  +A+ QK GGTCAF+DAE
Sbjct: 4   IQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTTLTLQVVAEMQKIGGTCAFIDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA KLGV + +LLISQPDTGEQALEI D LVRSG++D+I+IDSVAAL P+AEIE
Sbjct: 64  HALDVGYASKLGVSVPDLLISQPDTGEQALEIADALVRSGSIDLIIIDSVAALVPKAEIE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+SLPG+QARLMSQALRKLT +I R+   ++FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTGTIKRTNSTVIFINQIRMKIGVMFGNPETTTGGNALK 183

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YG+GIS  GE+ID
Sbjct: 184 FYSSVRLDIRRIGSIKKGDEVVGNETRVKVVKNKVSPPFREAIFDILYGQGISREGEIID 243

Query: 285 LGVKA 289
           LGV A
Sbjct: 244 LGVNA 248


>gi|58415421|emb|CAH57125.1| recA protein [Vibrio cincinnatiensis]
          Length = 265

 Score =  385 bits (988), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/267 (68%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYARKLGV++  LL+SQPDTGEQALEI D L RSGAVD++V
Sbjct: 59  AQRVGKTCAFIDAEHALDPIYARKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ +  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQADTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GELIDLGVK  +V+KSGA
Sbjct: 239 LYGQGFNREGELIDLGVKHKLVEKSGA 265


>gi|290795131|gb|ADD64580.1| RecA recombinase [Vibrio sp. FALF162]
 gi|290795133|gb|ADD64581.1| RecA recombinase [Vibrio sp. FALF454]
          Length = 249

 Score =  385 bits (988), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 181/242 (74%), Positives = 213/242 (88%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+ VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  +A++QK G TCAF+DAE
Sbjct: 8   IDTVSTGSLSLDIALGAGGLPFGRIVEIYGPESSGKTTLTLQVVAEAQKIGKTCAFIDAE 67

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA KLGVD+ NLL+SQPDTGEQALEI D L RSGAVD+I+IDSVAALTP+AEIE
Sbjct: 68  HALDPVYAGKLGVDIDNLLVSQPDTGEQALEIADALTRSGAVDVIIIDSVAALTPKAEIE 127

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT++I  S  +++FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 128 GEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIGVMFGNPETTTGGNALK 187

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR+GSIK+ D I GN TRVKVVKNK+A+PFKQ EF IMYGEGI+ +GELID
Sbjct: 188 FYASVRLDIRRIGSIKEGDEIVGNDTRVKVVKNKIAAPFKQAEFQIMYGEGINLYGELID 247

Query: 285 LG 286
           LG
Sbjct: 248 LG 249


>gi|58415427|emb|CAH57128.1| recA protein [Vibrio cincinnatiensis]
          Length = 265

 Score =  385 bits (988), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/267 (68%), Positives = 225/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA 
Sbjct: 1   SIMKLGDNRAM--DVETVSTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLECIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD IYARKLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV
Sbjct: 59  AQKNGKTCAFIDAEHALDPIYARKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QARL+SQ++RK+T ++  S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARLLSQSMRKMTGNLKASNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GELIDLGVK  +++K+GA
Sbjct: 239 LYGQGFNREGELIDLGVKHKLIEKAGA 265


>gi|58415642|emb|CAH57235.1| recA protein [Vibrio scophthalmi]
          Length = 265

 Score =  385 bits (988), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 180/267 (67%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIKD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GEL+DLGVK  +++K+GA
Sbjct: 239 LYGQGFNREGELVDLGVKHKLIEKAGA 265


>gi|56751174|ref|YP_171875.1| recombinase A [Synechococcus elongatus PCC 6301]
 gi|81299159|ref|YP_399367.1| recombinase A [Synechococcus elongatus PCC 7942]
 gi|76363345|sp|Q5N2W5|RECA_SYNP6 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123741845|sp|Q31RD9|RECA_SYNE7 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|56686133|dbj|BAD79355.1| recombination protein RecA [Synechococcus elongatus PCC 6301]
 gi|81168040|gb|ABB56380.1| RecA protein [Synechococcus elongatus PCC 7942]
          Length = 356

 Score =  385 bits (988), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/349 (57%), Positives = 260/349 (74%), Gaps = 8/349 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL   LSQI+R +GKGAIM+LG    +   +E +S+G+L LD+ALG GG PKGRI+
Sbjct: 11  EKEKALNLVLSQIERNFGKGAIMRLGDAARLR--VETISTGALTLDLALG-GGLPKGRII 67

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL LH IA+ QK GG  AFVDAEHALD +YA  +GVD+ NLLISQPDTG
Sbjct: 68  EVYGPESSGKTTLTLHAIAEVQKQGGIAAFVDAEHALDPVYATSVGVDIDNLLISQPDTG 127

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D LVRS AVDI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQA+RK+T +I
Sbjct: 128 EMALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEGEMGDAQVGLQARLMSQAMRKITGNI 187

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C ++F+NQ+R KIGV +GSPETTTGG ALKFY+SVRLDIRR+ ++K      G + 
Sbjct: 188 GKSGCTVIFLNQLRQKIGVTYGSPETTTGGQALKFYASVRLDIRRIQTLKKGTEEYGTRA 247

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF+  EFDI++G+GIS  G L+DL  +  ++ + GAW+S+ G  +GQGR
Sbjct: 248 KVKVVKNKVAPPFRIAEFDILFGKGISTLGCLVDLAEETGVILRKGAWYSYNGDNIGQGR 307

Query: 311 ENSKIFLRENIEIAENIESLLRQN----AGLVADSLLQEPAINTKDDAD 355
           +N+   L E+ +    +E  +R+     A + A+++   PA  T +D D
Sbjct: 308 DNTITHLEEHPDFRATVEQQVREKLALGAQVSANTVGAAPA-KTAEDTD 355


>gi|58415457|emb|CAH57143.1| recA protein [Vibrio ezurae]
 gi|58415459|emb|CAH57144.1| recA protein [Vibrio ezurae]
 gi|58415461|emb|CAH57145.1| recA protein [Vibrio ezurae]
 gi|58415582|emb|CAH57205.1| recA protein [Vibrio neonatus]
 gi|58415584|emb|CAH57206.1| recA protein [Vibrio neonatus]
          Length = 265

 Score =  385 bits (988), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 181/267 (67%), Positives = 227/267 (85%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLALDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGV++ +LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPIYAQKLGVNIDSLLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IKD D I GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEIVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYG+G +  GELIDLGVK  +++K+GA
Sbjct: 239 MYGQGFNREGELIDLGVKHKLIEKAGA 265


>gi|58415652|emb|CAH57240.1| recA protein [Vibrio splendidus]
 gi|58415654|emb|CAH57241.1| recA protein [Vibrio splendidus]
 gi|58415662|emb|CAH57245.1| recA protein [Vibrio tasmaniensis]
 gi|58415664|emb|CAH57246.1| recA protein [Vibrio tasmaniensis]
          Length = 265

 Score =  385 bits (988), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/267 (68%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 LYGKGFNREGELIDLGVKNKLVEKAGA 265


>gi|58415491|emb|CAH57160.1| recA protein [Vibrio halioticoli]
 gi|58415497|emb|CAH57163.1| recA protein [Vibrio halioticoli]
          Length = 265

 Score =  384 bits (987), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 181/267 (67%), Positives = 227/267 (85%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLALDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGV++ +LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPIYAQKLGVNIDSLLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IKD D I GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEIVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYG+G +  GELIDLGVK  +++K+GA
Sbjct: 239 MYGQGFNREGELIDLGVKNKLIEKAGA 265


>gi|58415618|emb|CAH57223.1| recA protein [Listonella pelagia]
          Length = 265

 Score =  384 bits (987), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 181/267 (67%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLECIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GELIDLGVK  +++K+GA
Sbjct: 239 LYGQGFNREGELIDLGVKNKLIEKAGA 265


>gi|58415666|emb|CAH57247.1| recA protein [Vibrio tubiashii]
 gi|58415670|emb|CAH57249.1| recA protein [Vibrio tubiashii]
 gi|58415674|emb|CAH57251.1| recA protein [Vibrio tubiashii]
          Length = 265

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/267 (68%), Positives = 225/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLECIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG G +  GELIDLGVK  +V+K+GA
Sbjct: 239 LYGAGFNREGELIDLGVKHKLVEKAGA 265


>gi|58415475|emb|CAH57152.1| recA protein [Vibrio fortis]
          Length = 265

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/267 (68%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GELIDLGVK  +++K+GA
Sbjct: 239 LYGQGFNREGELIDLGVKHKLIEKAGA 265


>gi|215271640|emb|CAR57853.1| recombination-repair protein [Vibrio campbellii]
          Length = 267

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/269 (67%), Positives = 227/269 (84%), Gaps = 2/269 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG
Sbjct: 119 MVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+   
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANT 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGA 297
            IMYG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 QIMYGQGFNREGELIDLGVKHKLVEKAGA 267


>gi|298490120|ref|YP_003720297.1| recA protein ['Nostoc azollae' 0708]
 gi|298232038|gb|ADI63174.1| recA protein ['Nostoc azollae' 0708]
          Length = 359

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/320 (60%), Positives = 248/320 (77%), Gaps = 3/320 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL   L+QI+R +GKGAIM+LG    +   +E +S+G+L LD+ALG GG PKGR++E
Sbjct: 11  KQKALTMVLNQIERSFGKGAIMRLGDATRMR--VETISTGALTLDLALG-GGLPKGRVIE 67

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH IA+ QK GG  AFVDAEHALD  YA  LGVD++NLL+SQPDTGE
Sbjct: 68  IYGPESSGKTTVALHAIAEVQKNGGIAAFVDAEHALDPTYAGALGVDIENLLVSQPDTGE 127

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
             LEI D LVRS AVDI+VIDSVAAL PRAEIEGDMG++  G+QARLMSQALRK+T +I 
Sbjct: 128 AGLEIVDQLVRSAAVDIVVIDSVAALVPRAEIEGDMGDTHVGLQARLMSQALRKITGNIG 187

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S C ++FINQ+R KIGV +GSPETTTGGNALKFY+SVRLDIRR+ ++K      GN+ +
Sbjct: 188 KSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGSDEFGNRVK 247

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV KNK+A PF+  EFDI++G+G+S  G L+DL  +  ++ + GAW+S+ G+ + QGR+
Sbjct: 248 VKVAKNKVAPPFRIAEFDIIFGKGVSTLGCLVDLAEETGVLLRKGAWYSYNGENISQGRD 307

Query: 312 NSKIFLRENIEIAENIESLL 331
           N+  +L E  E A+ I  L+
Sbjct: 308 NAIRYLEEKTEFADKIRELV 327


>gi|297565306|ref|YP_003684278.1| recA protein [Meiothermus silvanus DSM 9946]
 gi|296849755|gb|ADH62770.1| recA protein [Meiothermus silvanus DSM 9946]
          Length = 349

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/327 (55%), Positives = 252/327 (77%), Gaps = 3/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALE AL  I++ +GKGA+M+LG   S  + ++V+S+GSLGLD+ALGIGG P+GRI+
Sbjct: 4   EKQKALEGALKSIEKQFGKGAVMRLGE--SPRQQVDVISTGSLGLDMALGIGGIPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPES GKTTL+L  +A++Q+ GG  AFVDAEHALD IYA+ LGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESGGKTTLSLSIVAEAQRKGGVAAFVDAEHALDPIYAKSLGVNIDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI ++L RSGA+D+IV+DSVAAL P+AEIEG MG++  G+QARLMSQALRKLT+++
Sbjct: 122 EQALEIVELLTRSGAIDVIVVDSVAALVPQAEIEGQMGDAFVGIQARLMSQALRKLTAAL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQ 249
           S+S    +FINQ+R K+GVM+G+PETT GG ALKFY+SVRLD+R+ G  IK  +   GN+
Sbjct: 182 SKSNTACIFINQIREKVGVMYGNPETTPGGRALKFYASVRLDVRKQGQPIKVGNDAIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKV KNK+A PF++ E ++ +G+GI    +L+ + +   +++KSG+W S+   RLGQG
Sbjct: 242 VKVKVTKNKLAPPFREHEIELYFGKGIDPMADLVTVAIATGVIEKSGSWLSYGETRLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336
           +E +   LR   ++A+ I   +   AG
Sbjct: 302 KEKAADLLRTAPQMAQEIREKVLAQAG 328


>gi|257462503|ref|ZP_05626915.1| recombinase A [Fusobacterium sp. D12]
 gi|317060159|ref|ZP_07924644.1| recombinase A [Fusobacterium sp. D12]
 gi|313685835|gb|EFS22670.1| recombinase A [Fusobacterium sp. D12]
          Length = 356

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/317 (58%), Positives = 243/317 (76%), Gaps = 3/317 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K M +  K KALE A+ +I + +G+GAIM+LG    +   IEV+ +GSL LD ALG+GG 
Sbjct: 7   KTMELTAKQKALETAVKEITKDFGEGAIMKLGDNSHM--QIEVIPTGSLNLDAALGLGGV 64

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GR+VEIYG ESSGKTT+ALH IA++QK GG  AF+DAEHALD +YA+ LGVD+  LLI
Sbjct: 65  PRGRVVEIYGAESSGKTTIALHIIAEAQKMGGIAAFIDAEHALDPVYAKALGVDIDELLI 124

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           +QPD GEQAL+I D LVRSGA+D+IV+DSVAAL P+ EI+G+M +   G+QARLMS+ALR
Sbjct: 125 AQPDFGEQALDIADTLVRSGAIDVIVVDSVAALVPKVEIDGEMSDQQMGLQARLMSKALR 184

Query: 185 KLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           KLT+++++SK  ++FINQ+R KIG   FG   TTTGG ALKFYSSVR++++R+ ++K  +
Sbjct: 185 KLTATLNKSKTTMIFINQIREKIGGFGFGPQTTTTGGKALKFYSSVRMEVKRIAAVKQGE 244

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+T VKV KNK+A PFK+  F IMYG+GIS  GE++D+ +   IV KSGAWFSF  
Sbjct: 245 DVIGNETVVKVTKNKIAPPFKEASFQIMYGKGISKVGEILDIALAKDIVAKSGAWFSFGE 304

Query: 304 QRLGQGRENSKIFLREN 320
            RLGQG+EN K  L E 
Sbjct: 305 IRLGQGKENVKARLEEE 321


>gi|56181899|gb|AAV83930.1| RecA [Burkholderia cepacia]
          Length = 240

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/240 (75%), Positives = 213/240 (88%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           GLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA 
Sbjct: 1   GLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAS 60

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
           KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG
Sbjct: 61  KLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPG 120

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
           +QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDI
Sbjct: 121 LQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDI 180

Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVD 293
           RR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVD
Sbjct: 181 RRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVD 240


>gi|290795117|gb|ADD64574.1| RecA recombinase [Vibrio splendidus]
          Length = 263

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/265 (69%), Positives = 224/265 (84%), Gaps = 2/265 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D
Sbjct: 59  IAAAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAID 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAE 238

Query: 268 FDIMYGEGISFFGELIDLGVKASIV 292
             I+YG+G +  GELIDLGVK  +V
Sbjct: 239 TQILYGKGFNREGELIDLGVKNKLV 263


>gi|58415495|emb|CAH57162.1| recA protein [Vibrio halioticoli]
          Length = 265

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/267 (67%), Positives = 227/267 (85%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLALDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA++LGV++ +LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPIYAQRLGVNIDSLLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IKD D I GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEIVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYG+G +  GELIDLGVK  +++K+GA
Sbjct: 239 MYGQGFNREGELIDLGVKNKLIEKAGA 265


>gi|58415686|emb|CAH57257.1| recA protein [Vibrio xuii]
          Length = 265

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/267 (67%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GELIDLGVK  +++KSGA
Sbjct: 239 LYGQGFNREGELIDLGVKHKLIEKSGA 265


>gi|228470742|ref|ZP_04055593.1| protein RecA [Porphyromonas uenonis 60-3]
 gi|228307599|gb|EEK16595.1| protein RecA [Porphyromonas uenonis 60-3]
          Length = 358

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/346 (54%), Positives = 251/346 (72%), Gaps = 12/346 (3%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KALE  + +IQ+ +GKGAIM +       E + V+ SGSL LDIALG+GG+P+GRI+EI+
Sbjct: 2   KALETTMGRIQKQFGKGAIMNMADDA--VEDVSVIPSGSLTLDIALGVGGYPRGRIIEIF 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTLA+H IA++QK GG  A +DAEHA D  YA+ LGVD+  L ISQPD GEQA
Sbjct: 60  GPESSGKTTLAIHAIAEAQKLGGIAAIIDAEHAFDPTYAQALGVDISRLWISQPDDGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           L+I + L+RS AVDI+V+DSVAALTP+AEIEG+MG++  G+ ARLMS+A+RK+T+++SRS
Sbjct: 120 LDIAEQLIRSSAVDILVVDSVAALTPKAEIEGEMGDTQVGLHARLMSRAMRKITAAVSRS 179

Query: 194 KCILVFINQMRMKIGVMF---GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           K   +FINQ+RMKIG  +   G  E TTGGNALKFYSSVRLDIR    IK  D + G  T
Sbjct: 180 KTCCIFINQLRMKIGNGYSPTGPSEVTTGGNALKFYSSVRLDIRAYKQIKKGDDVVGKVT 239

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
            V+VVKNK+A PF++ +FDI++G+GI+  GE+ID      I+ KSG+WFS++G  +GQGR
Sbjct: 240 SVRVVKNKVAPPFRRAQFDILFGQGINRVGEIIDAATDMGILKKSGSWFSYQGNNIGQGR 299

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           +  K  L +N E+A+ +       A  V D L  E  ++   DAD+
Sbjct: 300 DAVKELLDDNPELADEV-------AQQVMDQLAHEGKLHLSQDADE 338


>gi|58415429|emb|CAH57129.1| recA protein [Vibrio coralliilyticus]
 gi|58415433|emb|CAH57131.1| recA protein [Vibrio coralliilyticus]
 gi|58415435|emb|CAH57132.1| recA protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 265

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/267 (67%), Positives = 225/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYG G +  GELIDLGVK  +V+K+GA
Sbjct: 239 MYGAGFNREGELIDLGVKNKLVEKAGA 265


>gi|54792156|emb|CAE54394.1| recombination-repair protein [Photobacterium leiognathi]
 gi|58415359|emb|CAH57094.1| recA protein [Photobacterium leiognathi subsp. leiognathi]
          Length = 263

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/265 (68%), Positives = 225/265 (84%), Gaps = 2/265 (0%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           L QI++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGPESSG
Sbjct: 1   LGQIEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 58

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTL L TIA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D 
Sbjct: 59  KTTLTLETIAAAQRKGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEICDA 118

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +F
Sbjct: 119 LARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIF 178

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           INQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+
Sbjct: 179 INQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKI 238

Query: 260 ASPFKQVEFDIMYGEGISFFGELID 284
           A+PFKQ +  I+YG+G +  GEL+D
Sbjct: 239 AAPFKQADTQILYGQGFNRNGELVD 263


>gi|283768312|ref|ZP_06341224.1| RecA protein [Bulleidia extructa W1219]
 gi|283104704|gb|EFC06076.1| RecA protein [Bulleidia extructa W1219]
          Length = 346

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 177/319 (55%), Positives = 252/319 (78%), Gaps = 2/319 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L+ AL  I++ YGKG+IM+LG +  +   I+ + SGSL LD ALGIGG+PKGRI+EIYGP
Sbjct: 17  LQEALKTIEKEYGKGSIMRLGDRADV--SIDAIPSGSLALDKALGIGGYPKGRIIEIYGP 74

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLALH IA+ QK GG CAF+DAE+A+D  YA KLGVD++ L++SQPD+GEQALE
Sbjct: 75  ESSGKTTLALHAIAECQKQGGCCAFIDAENAIDPQYAAKLGVDIEKLILSQPDSGEQALE 134

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           IT++L++SG +D++VIDSVAAL P+AE++G+MG++  G+QARLMS+A+RKL  +++RS  
Sbjct: 135 ITEILIKSGGIDLVVIDSVAALVPQAELDGEMGDASVGLQARLMSKAMRKLAGAMNRSNT 194

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
             +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+R+  ++K    + G+ T++KVV
Sbjct: 195 TAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRKGEALKSGADVVGSATKIKVV 254

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK+A PFK    ++++GEGIS   E+I+L V+  I+DK+GAWFS++G+++GQG    + 
Sbjct: 255 KNKVAPPFKVAIVNMIFGEGISHVDEIINLAVEYDIIDKAGAWFSYEGEKIGQGFNAVRD 314

Query: 316 FLRENIEIAENIESLLRQN 334
           FL+ + E+   I + +++ 
Sbjct: 315 FLKSSPEMEAQISAQVKEK 333


>gi|291002572|gb|ADD71491.1| RecA recombinase [Vibrio cyclitrophicus]
          Length = 264

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/266 (68%), Positives = 225/266 (84%), Gaps = 2/266 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  I+ +
Sbjct: 1   IMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELISAA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VI
Sbjct: 59  QKVGKTCAFIDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVI 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMF
Sbjct: 119 DSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I+
Sbjct: 179 GNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQIL 238

Query: 272 YGEGISFFGELIDLGVKASIVDKSGA 297
           YG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 YGKGFNREGELIDLGVKNKLVEKAGA 264


>gi|58415628|emb|CAH57228.1| recA protein [Vibrio proteolyticus]
 gi|58415630|emb|CAH57229.1| recA protein [Vibrio proteolyticus]
          Length = 265

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/267 (67%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GEL+DLGVK  +V+K+GA
Sbjct: 239 LYGQGFNREGELVDLGVKHKLVEKAGA 265


>gi|58415423|emb|CAH57126.1| recA protein [Vibrio cincinnatiensis]
          Length = 265

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/267 (67%), Positives = 225/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA 
Sbjct: 1   SIMKLGDNRAM--DVETVSTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLECIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD IYARKLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV
Sbjct: 59  AQKNGKTCAFIDAEHALDPIYARKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QARL+SQ++RK+T ++  S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARLLSQSMRKMTGNLKASNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G + +GELIDLGVK  +V+K+GA
Sbjct: 239 LYGKGFNRYGELIDLGVKHKLVEKAGA 265


>gi|158336682|ref|YP_001517856.1| recombinase A [Acaryochloris marina MBIC11017]
 gi|158306923|gb|ABW28540.1| protein RecA [Acaryochloris marina MBIC11017]
          Length = 356

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/322 (59%), Positives = 252/322 (78%), Gaps = 3/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL   L+QI+R +GKG+IM+LG    +   +E +SSG+L LD+ALG GG PKGR++
Sbjct: 10  EKDKALGVVLNQIERTFGKGSIMRLGDATQM--KVETISSGALTLDLALG-GGLPKGRVI 66

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH IA+ Q++GG  AFVDAEHALD  YA  LGVD +NLL++QPDTG
Sbjct: 67  EIYGPESSGKTTLALHAIAEVQRSGGIAAFVDAEHALDPTYASALGVDTENLLVAQPDTG 126

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D LVRS AVDI+VIDSVAAL PRAEIEGDMG+S  G+QARLMSQALRK+T +I
Sbjct: 127 ESALEIVDQLVRSTAVDIVVIDSVAALVPRAEIEGDMGDSHMGLQARLMSQALRKITGNI 186

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C +VF+NQ+R KIGV +G+PE TTGGNALKFY+SVRLDIRR+ ++K      G + 
Sbjct: 187 GRTGCTVVFLNQLRQKIGVTYGNPEVTTGGNALKFYASVRLDIRRIQTLKKGTEEFGIRA 246

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF+  EFDI++G+GIS  G L+D+  +  I+ + GAW+S+ G+ +GQGR
Sbjct: 247 KVKVVKNKVAPPFRIGEFDIIFGQGISTLGCLLDMAEETDILVRKGAWYSYNGENIGQGR 306

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           +N+  ++++N E  E++   +R
Sbjct: 307 DNTVRYMKDNPEFTESLTQQVR 328


>gi|58415524|emb|CAH57176.1| recA protein [Vibrio ichthyoenteri]
 gi|58415526|emb|CAH57177.1| recA protein [Vibrio ichthyoenteri]
 gi|58415528|emb|CAH57178.1| recA protein [Vibrio ichthyoenteri]
          Length = 265

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 179/267 (67%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GEL+DLGVK  +++K+GA
Sbjct: 239 LYGQGFNREGELVDLGVKHKLIEKAGA 265


>gi|313901147|ref|ZP_07834635.1| RecA protein [Clostridium sp. HGF2]
 gi|312954105|gb|EFR35785.1| RecA protein [Clostridium sp. HGF2]
          Length = 350

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/322 (58%), Positives = 259/322 (80%), Gaps = 2/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K   L+  L QI++ +GKG+IM+LG + S+   I+ +SSGS+ +D ALGIGG+PKGRIVE
Sbjct: 14  KKNLLDDTLKQIEKQFGKGSIMKLGDRASV--EIDAISSGSIKVDEALGIGGYPKGRIVE 71

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH IA+ QK GG  AF+DAE+A+D  YA+ LGV++ +L++SQPD+GE
Sbjct: 72  IYGPESSGKTTLALHAIAEVQKKGGRAAFIDAENAIDPTYAKNLGVNIDDLILSQPDSGE 131

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL+IT+ML++SGA+D++V+DSVAAL P+AE++G+MG++  G+QAR+MS+A+RKL+  ++
Sbjct: 132 QALDITEMLIKSGAIDLVVVDSVAALVPQAELDGEMGDANVGLQARMMSKAMRKLSGIMN 191

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           RS+C  +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLDIRR  +IK+   I GN+  
Sbjct: 192 RSECTAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDIRRSEAIKNGTDIIGNKVN 251

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PFK  + +IMYGEGIS+  EL+DL V   IV KSGAWFS+ G+++GQG+E
Sbjct: 252 VKVVKNKVAPPFKVAQIEIMYGEGISYVAELLDLCVDHDIVMKSGAWFSYNGEKIGQGKE 311

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
            +K F++ N  + E + + LR+
Sbjct: 312 AAKTFIKSNPALMEELGAKLRE 333


>gi|58415447|emb|CAH57138.1| recA protein [Vibrio diazotrophicus]
 gi|58415449|emb|CAH57139.1| recA protein [Vibrio diazotrophicus]
 gi|58415451|emb|CAH57140.1| recA protein [Vibrio diazotrophicus]
 gi|58415455|emb|CAH57142.1| recA protein [Vibrio diazotrophicus]
          Length = 265

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/267 (67%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYARKLGV++  LL+SQPDTGEQALEI D L RSGAVD++V
Sbjct: 59  AQRVGKTCAFIDAEHALDPIYARKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ +  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQADTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 LYGQGFNREGELIDLGVKHKLVEKAGA 265


>gi|215271638|emb|CAR57852.1| recombination-repair protein [Vibrio campbellii]
          Length = 267

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/269 (67%), Positives = 226/269 (84%), Gaps = 2/269 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD +YA KLGVD+  LL+SQPDTGEQALEI D L RSGA+D+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPVYAMKLGVDIDALLVSQPDTGEQALEICDALARSGAIDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG
Sbjct: 119 MVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+   
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANT 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGA 297
            IMYG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 QIMYGQGFNREGELIDLGVKHKLVEKAGA 267


>gi|254421418|ref|ZP_05035136.1| protein RecA [Synechococcus sp. PCC 7335]
 gi|196188907|gb|EDX83871.1| protein RecA [Synechococcus sp. PCC 7335]
          Length = 378

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/319 (59%), Positives = 253/319 (79%), Gaps = 3/319 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL + L+QI+R +GKG+IM+LG    +   +E + +G+L LD+ALG GG PKGR++
Sbjct: 8   EKQKALTSVLTQIERNFGKGSIMRLGEASRM--QVETIPTGALTLDMALG-GGLPKGRVI 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH IA+ Q+ GG  AFVDAEHALD  YA  LGVD++NLLISQPDTG
Sbjct: 65  EIYGPESSGKTTLALHAIAEIQRQGGVAAFVDAEHALDPYYAANLGVDVENLLISQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E  LEI D LVRS AVD+IV+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T +I
Sbjct: 125 EMGLEICDQLVRSSAVDLIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S+C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K  +   G + 
Sbjct: 185 GKSQCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKKGNDQFGIRV 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV KNK+A PF+  EFDI++GEGIS  G L+D+  +  IV + GAW+S++G  + QGR
Sbjct: 245 KVKVAKNKVAPPFRIAEFDIIFGEGISILGCLLDIAEEHDIVVRKGAWYSYEGNNVAQGR 304

Query: 311 ENSKIFLRENIEIAENIES 329
           +N+ I ++E+ E A  +++
Sbjct: 305 DNTIIRMKEDPEFAAKVKA 323


>gi|32477199|ref|NP_870193.1| recombinase A [Rhodopirellula baltica SH 1]
 gi|60393013|sp|Q7UJJ0|RECA_RHOBA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|32447750|emb|CAD77268.1| RecA protein (Recombinase A) [Rhodopirellula baltica SH 1]
          Length = 375

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 179/332 (53%), Positives = 255/332 (76%), Gaps = 2/332 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
            I++K   L+  L QI++ +G GAIM LG+   +   I+ +S+GSL LD+ALG  G P+G
Sbjct: 24  TILEKEPGLKTTLQQIEKSFGDGAIMPLGASQKLT--IDCISTGSLSLDMALGGKGIPRG 81

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+E++GPESSGKTTLALH  A++QK+GG  A +DAEHA D  +A+KLGV+L +LL+SQP
Sbjct: 82  RIIEVFGPESSGKTTLALHIGAEAQKSGGIAAIIDAEHAFDPSWAKKLGVELDSLLVSQP 141

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
            +GE+A++I +MLV+S AVD+I+IDSVAAL P+AE+EG++G+S  G+QARLMSQ++RKLT
Sbjct: 142 SSGEEAMQICEMLVKSNAVDVIIIDSVAALVPKAELEGEIGDSHVGLQARLMSQSMRKLT 201

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            +I++SK  +VFINQ+R K+GVMFGSPETT GG ALKFY S R+D+RR+GS+KD +   G
Sbjct: 202 GAIAKSKSAVVFINQIREKVGVMFGSPETTPGGRALKFYCSCRIDVRRIGSLKDGEEQVG 261

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
            + + K+VKNK+A PF+  EFD+M+  GISF G+L+DLG +  +V++SG+WF +    LG
Sbjct: 262 QRVKAKIVKNKVAPPFRIAEFDMMHSNGISFEGDLLDLGTENKVVNRSGSWFKYGDTYLG 321

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           QG+E ++ FL EN ++++ I+  +    G VA
Sbjct: 322 QGKEKARNFLIENPDVSDEIKQKVLAAGGFVA 353


>gi|159146610|gb|ABW90749.1| recombinase A [Photobacterium damselae]
          Length = 265

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/267 (67%), Positives = 227/267 (85%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA 
Sbjct: 1   SIMKLGDNRTM--DVETVSTGSLALDIALGAGGLPMGRIVEIFGPESSGKTTLTLEVIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+DI+V
Sbjct: 59  AQREGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDILV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFKQ +  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKQADTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G + +GELIDLGVK  +V+K+GA
Sbjct: 239 LYGKGFNRYGELIDLGVKNKLVEKAGA 265


>gi|289623238|emb|CAX51156.1| recA protein [Aeromonas salmonicida subsp. achromogenes]
          Length = 243

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/242 (74%), Positives = 211/242 (87%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L  IA++QK G  CAF+DAE
Sbjct: 2   IEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKVCAFIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE
Sbjct: 62  HALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNALK
Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR+G+IK+ D + GN+TRVKVVKNK+A PFKQ EF I YG GIS  GEL+D
Sbjct: 182 FYASVRLDIRRIGAIKEGDEVVGNETRVKVVKNKVAPPFKQAEFQIFYGVGISKEGELVD 241

Query: 285 LG 286
           LG
Sbjct: 242 LG 243


>gi|327540506|gb|EGF27088.1| recombinase A [Rhodopirellula baltica WH47]
          Length = 369

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 179/332 (53%), Positives = 255/332 (76%), Gaps = 2/332 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
            I++K   L+  L QI++ +G GAIM LG+   +   I+ +S+GSL LD+ALG  G P+G
Sbjct: 18  TILEKEPGLKTTLQQIEKSFGDGAIMPLGASQKLT--IDCISTGSLSLDMALGGKGIPRG 75

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+E++GPESSGKTTLALH  A++QK+GG  A +DAEHA D  +A+KLGV+L +LL+SQP
Sbjct: 76  RIIEVFGPESSGKTTLALHIGAEAQKSGGIAAIIDAEHAFDPSWAKKLGVELDSLLVSQP 135

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
            +GE+A++I +MLV+S AVD+I+IDSVAAL P+AE+EG++G+S  G+QARLMSQ++RKLT
Sbjct: 136 SSGEEAMQICEMLVKSNAVDVIIIDSVAALVPKAELEGEIGDSHVGLQARLMSQSMRKLT 195

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            +I++SK  +VFINQ+R K+GVMFGSPETT GG ALKFY S R+D+RR+GS+KD +   G
Sbjct: 196 GAIAKSKSAVVFINQIREKVGVMFGSPETTPGGRALKFYCSCRIDVRRIGSLKDGEEQVG 255

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
            + + K+VKNK+A PF+  EFD+M+  GISF G+L+DLG +  +V++SG+WF +    LG
Sbjct: 256 QRVKAKIVKNKVAPPFRIAEFDMMHSNGISFEGDLLDLGTENKVVNRSGSWFKYGDTYLG 315

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           QG+E ++ FL EN ++++ I+  +    G VA
Sbjct: 316 QGKEKARNFLIENPDVSDEIKQKVLAAGGFVA 347


>gi|179184957|gb|ACB78165.1| RecA [Vibrio gallaecicus]
          Length = 262

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/264 (69%), Positives = 223/264 (84%), Gaps = 2/264 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LD+ALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDVALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDK 294
           +YG+G +  GELIDLGVK  +VDK
Sbjct: 239 LYGQGFNREGELIDLGVKNKLVDK 262


>gi|11119177|gb|AAG30537.1|AF307982_1 RecA [Streptococcus agalactiae]
 gi|76562332|gb|ABA44916.1| recA protein [Streptococcus agalactiae A909]
          Length = 340

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/328 (57%), Positives = 250/328 (76%), Gaps = 7/328 (2%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG +    + ++V+SSGSL LDIALG GG+PKGRIVEIYGPESSGKTT+ALH +AQ+Q
Sbjct: 1   MRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIVEIYGPESSGKTTVALHAVAQAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG  AF+DAEHALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+D
Sbjct: 59  KEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVD 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG
Sbjct: 119 SVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEF 268
           +PETT GG ALKFYSSVRLD+R    IK     KD   G +T++KVVKNK+A PF++   
Sbjct: 179 NPETTPGGRALKFYSSVRLDVRGNTQIKGTGEHKDHNVGKETKIKVVKNKVAPPFREAFV 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           +IMYGEGIS  GELI +     I+ K+GAW+S+ G+++GQG EN+K +L +N  I + I+
Sbjct: 239 EIMYGEGISRTGELIKIASDLDIIQKAGAWYSYNGEKIGQGSENAKKYLADNPAIFDEID 298

Query: 329 SLLRQNAGLVA-DSLLQEPAINTKDDAD 355
             +R + G+   DS +Q   +  K++AD
Sbjct: 299 HKVRVHFGMTEDDSPVQSELVEEKNEAD 326


>gi|54792489|emb|CAE45624.1| recombination-repair protein [Vibrio orientalis]
 gi|58415600|emb|CAH57214.1| recA protein [Vibrio orientalis]
          Length = 259

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/261 (69%), Positives = 222/261 (85%), Gaps = 2/261 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  CIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELIDLGV 287
           E  I+YG+G +  GELIDLGV
Sbjct: 239 ETQILYGQGFNREGELIDLGV 259


>gi|289623240|emb|CAX51157.1| recA protein [Aeromonas salmonicida subsp. pectinolytica]
 gi|289623242|emb|CAX51158.1| recA protein [Aeromonas salmonicida subsp. masoucida]
          Length = 244

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/242 (74%), Positives = 211/242 (87%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L  IA++QK G  CAF+DAE
Sbjct: 3   IEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKVCAFIDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE
Sbjct: 63  HALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNALK
Sbjct: 123 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 182

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR+G+IK+ D + GN+TRVKVVKNK+A PFKQ EF I YG GIS  GEL+D
Sbjct: 183 FYASVRLDIRRIGAIKEGDEVVGNETRVKVVKNKVAPPFKQAEFQIFYGVGISKEGELVD 242

Query: 285 LG 286
           LG
Sbjct: 243 LG 244


>gi|58415345|emb|CAH57087.1| recA protein [Photobacterium damselae subsp. damselae]
          Length = 265

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/267 (68%), Positives = 225/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA 
Sbjct: 1   SIMKLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLEVIAS 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGAVD+IV
Sbjct: 59  AQKEGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEICDALARSGAVDVIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QARL+SQ++RK+T ++  S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARLLSQSMRKMTGNLKASNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ +  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQADTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 LYGQGFNRNGELIDLGVKHKLVEKAGA 265


>gi|319827232|gb|ADV74821.1| recombinase repair protein [Vibrio neptunius]
          Length = 263

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/265 (68%), Positives = 223/265 (84%), Gaps = 2/265 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAID 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAE 238

Query: 268 FDIMYGEGISFFGELIDLGVKASIV 292
             IMYG G +  GELIDLGVK  +V
Sbjct: 239 TQIMYGAGFNREGELIDLGVKNKLV 263


>gi|52630801|gb|AAU84868.1| RecA [Burkholderia caledonica]
          Length = 242

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/242 (74%), Positives = 215/242 (88%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AE
Sbjct: 61  AEHALDIQYAGKLGVNVNDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           IEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNA
Sbjct: 121 IEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNA 180

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+
Sbjct: 181 LKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEV 240

Query: 283 ID 284
           ID
Sbjct: 241 ID 242


>gi|58415381|emb|CAH57105.1| recA protein [Listonella anguillarum]
 gi|58415592|emb|CAH57210.1| recA protein [Vibrio ordalii]
 gi|58415596|emb|CAH57212.1| recA protein [Vibrio ordalii]
 gi|58415598|emb|CAH57213.1| recA protein [Vibrio ordalii]
          Length = 265

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/267 (67%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSGA+D+IV
Sbjct: 59  AQRVGKTCAFIDAEHALDPIYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAIDVIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ +  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQADTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GEL+DLGVK  +V+K+GA
Sbjct: 239 LYGQGFNREGELVDLGVKHKLVEKAGA 265


>gi|58415489|emb|CAH57159.1| recA protein [Vibrio gazogenes]
          Length = 265

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/267 (67%), Positives = 225/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYG+G +  GEL+DLGVK  +V+K+GA
Sbjct: 239 MYGQGFNREGELVDLGVKHKLVEKAGA 265


>gi|52630821|gb|AAU84878.1| RecA [Burkholderia sp. R20943]
          Length = 244

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 179/244 (73%), Positives = 216/244 (88%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           +VVS+GSLGL+IALG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGT AF+DAEH
Sbjct: 1   QVVSTGSLGLNIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG
Sbjct: 61  ALDIQYAGKLGVNVNDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +MG+SLPG+QARLMSQ LRKLT +I R+ C+++ INQ+RMKIGVMFG+PETTTGGNALKF
Sbjct: 121 EMGDSLPGLQARLMSQELRKLTGTIKRTNCLVILINQIRMKIGVMFGNPETTTGGNALKF 180

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           Y+SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A PF++  FDI+YGEGIS  GE+IDL
Sbjct: 181 YASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPPFREAIFDILYGEGISRQGEVIDL 240

Query: 286 GVKA 289
           GV+A
Sbjct: 241 GVQA 244


>gi|300088434|ref|YP_003758956.1| RecA protein [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528167|gb|ADJ26635.1| recA protein [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 342

 Score =  382 bits (980), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/327 (55%), Positives = 245/327 (74%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALE A+  I++ +GKG+IM+L    S    ++V+ +GSL LD+ALG+GG P+GR+ 
Sbjct: 9   EKEKALEIAVGLIEKQFGKGSIMKLTDAASTV-AVDVIPTGSLALDLALGVGGLPRGRVT 67

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPE SGKTTLA H IAQ QK GG   ++D EHA D  YA+  G+DL    I+QPD G
Sbjct: 68  EIYGPEGSGKTTLAQHVIAQCQKLGGKAFYIDVEHAFDPKYAKLCGIDLDEFYIAQPDAG 127

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+AL+I + LVRSG  D++V+DSVAAL P+AE+EGDMG+S  G+QARLMSQALRKLT++I
Sbjct: 128 EEALDICEKLVRSGGADLVVVDSVAALVPKAELEGDMGDSHVGLQARLMSQALRKLTATI 187

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +   +VFINQ+R K+G+MFG+PE T GG ALKFYSSVR+D+RRV ++K  +   G+  
Sbjct: 188 GNTGTAVVFINQLREKVGIMFGNPEVTPGGRALKFYSSVRIDLRRVETLKSGNIAIGSHV 247

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           + +VVKNK+A PF+  EFDIM+  GIS  G L+DLGV+  I+ K+GA+FS+   RLGQGR
Sbjct: 248 KARVVKNKVAPPFRVAEFDIMFDSGISREGNLLDLGVETGIIKKAGAFFSWDETRLGQGR 307

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           E ++ FL +N +IA+ IE  +RQ+AG+
Sbjct: 308 EAARTFLSQNPDIADAIEQAIRQDAGV 334


>gi|58415520|emb|CAH57174.1| recA protein [Vibrio hispanicus]
          Length = 265

 Score =  382 bits (980), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/267 (67%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMKLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGV + +LL+SQPDTGEQALEI D L RSGAVD++V
Sbjct: 59  AQRAGKTCAFIDAEHALDPVYAKKLGVQIDDLLVSQPDTGEQALEICDALARSGAVDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ +  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQADTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 LYGQGFNREGELIDLGVKHKLVEKAGA 265


>gi|289623234|emb|CAX51154.1| recA protein [Aeromonas simiae]
          Length = 239

 Score =  382 bits (980), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/238 (76%), Positives = 210/238 (88%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSL LDIALGIGG P GRIVEIYGPESSGKTTL L  IA++QK G TCAFVDAE
Sbjct: 2   IEAISTGSLSLDIALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSGAVD+I++DSVAALTP+AEIE
Sbjct: 62  HALDPIYAAKLGVNVDDLLVSQPDTGEQALEICDMLVRSGAVDVIIVDSVAALTPKAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGNPETTTGGNALK 181

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           FY+SVRLDIRR+G+IKD + + GN+TRVKVVKNK+A PFKQ EF IMYG GIS  GEL
Sbjct: 182 FYASVRLDIRRIGAIKDGEEVVGNETRVKVVKNKVAPPFKQAEFQIMYGAGISKEGEL 239


>gi|282900004|ref|ZP_06307964.1| RecA DNA recombination protein [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195102|gb|EFA70039.1| RecA DNA recombination protein [Cylindrospermopsis raciborskii
           CS-505]
          Length = 357

 Score =  382 bits (980), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/321 (60%), Positives = 248/321 (77%), Gaps = 3/321 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL   L+QI+R +GKGAIM+LG    +   +E +S+G+L LD+ALG GG PKGR++E
Sbjct: 10  KQKALSMVLNQIERSFGKGAIMRLGDATRMR--VETISTGALTLDLALG-GGLPKGRVIE 66

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH IA+ Q+ GG  AFVDAEHALD  YA  LGVD++NLL+SQPDTGE
Sbjct: 67  IYGPESSGKTTVALHAIAEVQRNGGIAAFVDAEHALDPTYAGALGVDIENLLVSQPDTGE 126

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
             LEI D LVRS AVDI+VIDSVAAL PRAEIEGDMG++  G+QARLMSQALRK+T +I 
Sbjct: 127 AGLEIVDQLVRSAAVDIVVIDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKITGNIG 186

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S C ++FINQ+R KIGV +GSPETTTGGNALKFY+SVRLDIRR+ ++K      GN+ +
Sbjct: 187 KSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGSDEFGNRVK 246

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV KNK+A PF+  EFDI++G+G+S  G L+DL  +  ++ + GAW+S  G+ + QGR+
Sbjct: 247 VKVAKNKVAPPFRVAEFDIIFGKGVSTLGCLVDLAEETGVLIRKGAWYSHNGENISQGRD 306

Query: 312 NSKIFLRENIEIAENIESLLR 332
           N+  +L E  + AE I+  +R
Sbjct: 307 NAIKYLEEKSDFAEKIKEQVR 327


>gi|260890264|ref|ZP_05901527.1| protein RecA [Leptotrichia hofstadii F0254]
 gi|260859884|gb|EEX74384.1| protein RecA [Leptotrichia hofstadii F0254]
          Length = 349

 Score =  382 bits (980), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/316 (61%), Positives = 248/316 (78%), Gaps = 5/316 (1%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L+ AL QIQ+ YG GA+M+LG    +   I  +S+GSL LDIALGIGG P+GRIVEIYG 
Sbjct: 2   LDLALKQIQKDYGDGAVMKLGENQKM--NIRAISTGSLNLDIALGIGGVPRGRIVEIYGA 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGV++  LLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALHIIAEAQKAGGTVAFIDAEHALDPVYAKALGVNIDELLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I+DMLVRSGA+D+IV+DSVAAL P+AEIEG+MG+   G+QARLMS+ALRKLT SIS+S  
Sbjct: 120 ISDMLVRSGAMDVIVVDSVAALVPKAEIEGEMGDQQMGLQARLMSKALRKLTGSISKSDT 179

Query: 196 ILVFINQMRMKIG---VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           +++FINQ+R KIG    + G   TT+GG ALKF+S+VRL+++RVGS+K  D + G++  V
Sbjct: 180 VMIFINQIREKIGGFSFVPGVQTTTSGGRALKFFSTVRLEVKRVGSVKQGDDVIGSEVVV 239

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KV KNK+A PFK+ +F++MYG GIS  GE++D  +   I  KSGAWFS+  +RLGQGR N
Sbjct: 240 KVTKNKVAPPFKEAKFNVMYGTGISRIGEVLDAAINLGIASKSGAWFSYGDERLGQGRVN 299

Query: 313 SKIFLRENIEIAENIE 328
            +  L+EN E+ E +E
Sbjct: 300 VENMLKENKEVYERLE 315


>gi|225156145|ref|ZP_03724626.1| Calcium-transporting ATPase [Opitutaceae bacterium TAV2]
 gi|224803123|gb|EEG21365.1| Calcium-transporting ATPase [Opitutaceae bacterium TAV2]
          Length = 385

 Score =  382 bits (980), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/315 (58%), Positives = 246/315 (78%), Gaps = 3/315 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           K L+ A+S I + +G+G+IM+LG    +   +E +S+GSL +D+ALG+GG P+GRIVEIY
Sbjct: 48  KNLDLAVSAITKQFGEGSIMRLGDAHKM--QVETLSTGSLAVDLALGVGGLPRGRIVEIY 105

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTT  L  IA++QK GG  AF+D EHALD  Y+R +GV+L +LL+SQPD+GE A
Sbjct: 106 GPESSGKTTFCLSVIAEAQKKGGLAAFIDVEHALDPKYSRIVGVNLDDLLVSQPDSGEDA 165

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           L I + L+RS A+D+IVIDSVAAL  + E++G MG++  G QARLMSQA+R+LT+ +S++
Sbjct: 166 LNIAEALIRSNAIDVIVIDSVAALISKQELDGQMGDATVGSQARLMSQAMRRLTAVVSKT 225

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQTRV 252
           KCIL+F NQ+R KIGVMFGSPETT GG ALKF+SS+R+DIRR   IK  D  I GN+T++
Sbjct: 226 KCILIFTNQIREKIGVMFGSPETTPGGRALKFFSSIRIDIRRKEQIKQPDGKIIGNRTKI 285

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK+A PF + EFDIMY EGIS  G L+DLG++  I++K GAW S++GQ +GQGR+ 
Sbjct: 286 KVVKNKVAPPFTECEFDIMYDEGISRTGSLLDLGIEHKILEKKGAWISYEGQLIGQGRDA 345

Query: 313 SKIFLRENIEIAENI 327
           +K  +R+N E+AE +
Sbjct: 346 AKQAIRDNPELAEKL 360


>gi|70904849|gb|AAZ14004.1| RecA [Burkholderia cepacia]
          Length = 257

 Score =  381 bits (979), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 177/255 (69%), Positives = 222/255 (87%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG
Sbjct: 1   LQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           ++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+R
Sbjct: 61  SIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIR 120

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF+
Sbjct: 121 MKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFR 180

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           +  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA
Sbjct: 181 EAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIA 240

Query: 325 ENIESLLRQNAGLVA 339
             IE+ +R++  +V+
Sbjct: 241 REIENRIRESLAVVS 255


>gi|290795187|gb|ADD64608.1| RecA recombinase [Vibrio cyclitrophicus]
          Length = 262

 Score =  381 bits (979), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/264 (68%), Positives = 223/264 (84%), Gaps = 2/264 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +
Sbjct: 1   IMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VI
Sbjct: 59  QKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVI 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMF
Sbjct: 119 DSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I+
Sbjct: 179 GNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQIL 238

Query: 272 YGEGISFFGELIDLGVKASIVDKS 295
           YG+G +  GELIDLGVK  +V+K+
Sbjct: 239 YGKGFNREGELIDLGVKNKLVEKA 262


>gi|187918010|ref|YP_001883573.1| recombinase A [Borrelia hermsii DAH]
 gi|76363321|sp|Q8VS69|RECA_BORHE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238689279|sp|B2RZJ7|RECA_BORHD RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|18034018|gb|AAL57321.1|AF395125_2 RecA [Borrelia hermsii]
 gi|119860858|gb|AAX16653.1| RecA protein [Borrelia hermsii DAH]
          Length = 356

 Score =  381 bits (979), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/326 (55%), Positives = 257/326 (78%), Gaps = 3/326 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +++ KA+E A  QI++ +GKG+++++G +  + +GIE +SSGS+ LD A+G+GG+P+GRI
Sbjct: 16  LNREKAIELARVQIEKDFGKGSLIKMG-ESPVGKGIESISSGSILLDEAIGVGGYPRGRI 74

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD  YA+ LGV++  L ISQPDT
Sbjct: 75  IEIFGPESSGKTTLTLQAIAEVQKNGGIAAFIDAEHALDPAYAKALGVNIDELWISQPDT 134

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + L+RSG VD+IV+DSVAALTP+AEI+G+MG+S  G+QARLMS+ALRK+T  
Sbjct: 135 GEQALEIAEYLIRSGGVDLIVVDSVAALTPQAEIDGEMGDSQIGLQARLMSKALRKITGI 194

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI--KDKDSITG 247
           +S+S   ++FINQ+RMKIGVMFG+PETTTGGNALKFYSS+RL++R++  +     D I G
Sbjct: 195 LSKSNTCIMFINQLRMKIGVMFGNPETTTGGNALKFYSSLRLEVRKIDQVTGSSADDIVG 254

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+ R+KVVKNK+A PF++VE  I +G+GIS    ++D  VK +++ K+G+W+S    +LG
Sbjct: 255 NKIRIKVVKNKVAPPFRKVELVIYFGKGISREASILDASVKYNLIQKTGSWYSMGDDKLG 314

Query: 308 QGRENSKIFLRENIEIAENIESLLRQ 333
           QGRE++  +L +  E+ + +ES LR+
Sbjct: 315 QGREHAVSYLVKEKEVTDELESKLRK 340


>gi|54792493|emb|CAE45626.1| recombination-repair protein [Vibrio shilonii AK1]
          Length = 256

 Score =  381 bits (978), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 178/258 (68%), Positives = 221/258 (85%), Gaps = 2/258 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +QK G TCAF+DAEHALD IYA+KLGVD+ +LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  CIAAAQKQGKTCAFIDAEHALDPIYAKKLGVDIDSLLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELID 284
           E  I+YG+G + +GELID
Sbjct: 239 ETQILYGQGFNRYGELID 256


>gi|294055627|ref|YP_003549285.1| recA protein [Coraliomargarita akajimensis DSM 45221]
 gi|293614960|gb|ADE55115.1| recA protein [Coraliomargarita akajimensis DSM 45221]
          Length = 357

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/328 (54%), Positives = 248/328 (75%), Gaps = 3/328 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           KE +     K L+ A+S I + +G GA+M+LG    +   ++ +S+GS+ +DIALG GG 
Sbjct: 10  KERSPESDRKNLDLAISGINKQFGPGALMRLGEAAQME--VDTISTGSIAIDIALGTGGL 67

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GRI EIYGPESSGKTT  L  IAQ+QK GG   F+D EHALD  YA+ +GVDL NL++
Sbjct: 68  PRGRICEIYGPESSGKTTFCLSIIAQAQKQGGNAVFIDVEHALDPRYAKVVGVDLDNLMV 127

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQP++GE AL IT+ L+RSGAVDIIV+DSVAAL  + E++G MG++  G+QAR+MSQA+R
Sbjct: 128 SQPESGEDALNITETLIRSGAVDIIVVDSVAALVSKNELDGQMGDTTVGLQARMMSQAMR 187

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK-D 243
           +LT +I+++ C+++F NQ+R KIGVMFG+PET  GG ALKF+SSVR+DIRR+G IK+   
Sbjct: 188 RLTGAINKTNCVVLFTNQIREKIGVMFGNPETQPGGRALKFFSSVRMDIRRIGQIKESAG 247

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+TR+KVVKNK+A PF + EFDIMY EGIS  G L+DLGV+  I++K G+W S+KG
Sbjct: 248 KVVGNRTRLKVVKNKVAPPFTECEFDIMYNEGISHSGSLVDLGVEHKILEKKGSWVSYKG 307

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLL 331
           + +GQGRE +K  + +N E+ + +  L+
Sbjct: 308 EMIGQGREAAKQHIMDNPELGDELTKLI 335


>gi|52630809|gb|AAU84872.1| RecA [Burkholderia sp. LMG 21262]
          Length = 243

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/241 (74%), Positives = 214/241 (88%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGT AF+D
Sbjct: 3   EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFID 62

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AE
Sbjct: 63  AEHALDIQYAGKLGVNVNDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAE 122

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           IEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNA
Sbjct: 123 IEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNA 182

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A PF++  FDI+YGEGIS  GE+
Sbjct: 183 LKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPPFREAIFDILYGEGISRQGEV 242

Query: 283 I 283
           I
Sbjct: 243 I 243


>gi|52630805|gb|AAU84870.1| RecA [Burkholderia sp. LMG 20580]
          Length = 240

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/239 (74%), Positives = 213/239 (89%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  
Sbjct: 1   GSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKIGGTAAFIDAEHALDIQ 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+S
Sbjct: 61  YAGKLGVNVNDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDS 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
           LPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR
Sbjct: 121 LPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVR 180

Query: 231 LDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
           LDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A
Sbjct: 181 LDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQA 239


>gi|54792455|emb|CAE45607.1| recombination-repair protein [Vibrio scophthalmi]
 gi|58415640|emb|CAH57234.1| recA protein [Vibrio scophthalmi LMG 19158]
          Length = 260

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/260 (68%), Positives = 221/260 (85%), Gaps = 2/260 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIKD D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELIDLG 286
           E  I+YG+G +  GEL+DLG
Sbjct: 239 ETQILYGQGFNREGELVDLG 258


>gi|289548826|ref|YP_003473814.1| recA protein [Thermocrinis albus DSM 14484]
 gi|289182443|gb|ADC89687.1| recA protein [Thermocrinis albus DSM 14484]
          Length = 332

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/323 (56%), Positives = 241/323 (74%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALE+ L+ I+R +GKGAIM L +   +   +E + +GS+ LDIA G+GG P+GRIV
Sbjct: 6   EKKKALESVLASIERKFGKGAIMPLKNAERVV--VEAIPTGSIALDIATGVGGIPRGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E++GPESSGKTTLALH IA++QK GG   F+DAEHALD  YA K+GVD + L ISQPD G
Sbjct: 64  ELFGPESSGKTTLALHVIAEAQKNGGVAVFIDAEHALDPRYAEKIGVDTERLFISQPDYG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L+ SGAVD+IV+DSVAAL P+ E+EG M +   G QARLMSQALRKL    
Sbjct: 124 EQALEIAESLLSSGAVDVIVVDSVAALVPKDELEGSMEDIHVGKQARLMSQALRKLKGLA 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++   ++FINQ+R KIGVM+G+PETT GG ALKF++ +RLDIR+VG +K+ D   G++ 
Sbjct: 184 HKANAAVIFINQLREKIGVMYGNPETTPGGRALKFFADMRLDIRKVGDLKEGDGKVGSRV 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RV++VKNK+A PF++ EFD++YGEGI    +LID   +  I+ KSGAW+S+   RLGQGR
Sbjct: 244 RVRIVKNKLAPPFQEAEFDVIYGEGICKLCDLIDTATQYGIIKKSGAWYSYGDVRLGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           +  K FL+EN  + E IE  LR+
Sbjct: 304 DQVKKFLQENPTLTEEIEKKLRE 326


>gi|58415546|emb|CAH57187.1| recA protein [Aliivibrio logei]
 gi|58415678|emb|CAH57253.1| recA protein [Vibrio vulnificus]
 gi|58415680|emb|CAH57254.1| recA protein [Vibrio vulnificus]
          Length = 265

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/267 (67%), Positives = 225/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAKKLGVNIDQLLVSQPDTGEQALEICDALARSGAVDVIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYG+G +  GELIDLGVK  +++KSGA
Sbjct: 239 MYGQGFNREGELIDLGVKCKLIEKSGA 265


>gi|52630775|gb|AAU84855.1| RecA [Burkholderia thailandensis]
          Length = 238

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/238 (75%), Positives = 211/238 (88%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD
Sbjct: 1   STGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
             YA KLGV++  LLISQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG
Sbjct: 61  VQYASKLGVNVPELLISQPDTGEQALEIVDALVRSGSIDMIVIDSVAALVPKAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           ++LPG+QARLMSQALRKLT SI R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSS
Sbjct: 121 DALPGLQARLMSQALRKLTGSIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
           VRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLG
Sbjct: 181 VRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLG 238


>gi|56606865|gb|AAW02817.1| recombinase A [Bibersteinia trehalosi]
          Length = 270

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/272 (70%), Positives = 228/272 (83%), Gaps = 2/272 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           +M LG   ++   IE VS+GS+GLD+ALGIGG P GRIVEI+GPESSGKTTL L  IAQ+
Sbjct: 1   VMTLGQTQTL--DIEAVSTGSIGLDLALGIGGLPMGRIVEIFGPESSGKTTLTLSLIAQA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QKT  TCAF+DAEHALD +YARKLGV+   LLISQPD GEQALEI D LVRSGAVD+I++
Sbjct: 59  QKTDKTCAFIDAEHALDPVYARKLGVNTDKLLISQPDNGEQALEICDALVRSGAVDVIIV 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT++I  + C++VFINQ+RMKIGVMF
Sbjct: 119 DSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIKNTNCLVVFINQIRMKIGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETTTGGNALKFYSSVRLDIRR G +K+ D I GNQT+VKVVKNK+A PF++V FDIM
Sbjct: 179 GNPETTTGGNALKFYSSVRLDIRRAGVVKEGDEILGNQTKVKVVKNKVAPPFREVMFDIM 238

Query: 272 YGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
           YG+GIS   EL+ L     ++ KSGAWFS++G
Sbjct: 239 YGQGISRMSELLILAEAQGLIKKSGAWFSYEG 270


>gi|58415389|emb|CAH57109.1| recA protein [Vibrio campbellii]
 gi|58415393|emb|CAH57111.1| recA protein [Vibrio campbellii]
 gi|58415395|emb|CAH57112.1| recA protein [Vibrio campbellii]
 gi|58415499|emb|CAH57164.1| recA protein [Vibrio harveyi]
 gi|58415503|emb|CAH57166.1| recA protein [Vibrio harveyi]
 gi|58415505|emb|CAH57167.1| recA protein [Vibrio harveyi]
 gi|58415507|emb|CAH57168.1| recA protein [Vibrio communis]
 gi|58415509|emb|CAH57169.1| recA protein [Vibrio harveyi]
 gi|58415511|emb|CAH57170.1| recA protein [Vibrio harveyi]
 gi|58415513|emb|CAH57171.1| recA protein [Vibrio harveyi]
 gi|58415515|emb|CAH57172.1| recA protein [Vibrio harveyi]
 gi|58415517|emb|CAH57173.1| recA protein [Vibrio harveyi]
 gi|58415606|emb|CAH57217.1| recA protein [Vibrio parahaemolyticus]
 gi|58415608|emb|CAH57218.1| recA protein [Vibrio parahaemolyticus]
 gi|58415610|emb|CAH57219.1| recA protein [Vibrio parahaemolyticus]
 gi|58415634|emb|CAH57231.1| recA protein [Vibrio rotiferianus]
 gi|215271684|emb|CAR57875.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|215271686|emb|CAR57876.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|215271688|emb|CAR57877.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|215271690|emb|CAR57878.1| recombination-repair protein [Vibrio parahaemolyticus]
          Length = 265

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/267 (67%), Positives = 225/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 MYGQGFNREGELIDLGVKHKLVEKAGA 265


>gi|229495459|ref|ZP_04389194.1| protein RecA [Porphyromonas endodontalis ATCC 35406]
 gi|229317902|gb|EEN83800.1| protein RecA [Porphyromonas endodontalis ATCC 35406]
          Length = 357

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/339 (56%), Positives = 264/339 (77%), Gaps = 8/339 (2%)

Query: 5   KEMNIVDKSK--ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
           KE   +DK+K  A++ A+ +I++ YGKG+IM +G + S  + ++V+ +GSL LD+ALG+G
Sbjct: 21  KEKVAIDKNKLAAIQMAMERIEKTYGKGSIMNMGERTS--DSVDVIPTGSLALDVALGVG 78

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G+P+GRI+EIYGPESSGKTTLA+H IA++Q+ GG  A +DAEHA D  YA  LGVD++ L
Sbjct: 79  GYPRGRIIEIYGPESSGKTTLAIHAIAEAQRMGGLAAIIDAEHAFDPTYAEHLGVDIERL 138

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
            ISQPD GEQALEI + L+RS AVD++V+DSVAALTP+ EIEG+MG+   G+QARLMSQA
Sbjct: 139 WISQPDNGEQALEIAEQLIRSSAVDVVVVDSVAALTPKQEIEGEMGDKNIGLQARLMSQA 198

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           LRK+TS++S+S  + +FINQ+R KIGV +G+PETTTGGNALKFY+SVRLDIRR   +K+ 
Sbjct: 199 LRKMTSAVSKSNAVCIFINQLREKIGVTYGNPETTTGGNALKFYASVRLDIRRKTQLKNG 258

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           D + GN+TRVKVVKNK++ PFK  EF+I++GEGIS   E+I+LG    I+ KSG+W+S+ 
Sbjct: 259 DDVYGNETRVKVVKNKVSPPFKTAEFEIIFGEGISSESEIINLGTDFGILQKSGSWYSYD 318

Query: 303 GQRLGQGRENSKIFLRENIEIA----ENIESLLRQNAGL 337
           G +LGQG++  +  L++N E++    E I   LRQ  G+
Sbjct: 319 GTKLGQGKDAVRRILQDNPELSSELREKIGEALRQQRGI 357


>gi|73749380|ref|YP_308619.1| recA protein [Dehalococcoides sp. CBDB1]
 gi|147669989|ref|YP_001214807.1| recA protein [Dehalococcoides sp. BAV1]
 gi|289433338|ref|YP_003463211.1| recA protein [Dehalococcoides sp. GT]
 gi|73661096|emb|CAI83703.1| recA protein [Dehalococcoides sp. CBDB1]
 gi|146270937|gb|ABQ17929.1| recA protein [Dehalococcoides sp. BAV1]
 gi|288947058|gb|ADC74755.1| recA protein [Dehalococcoides sp. GT]
          Length = 337

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/325 (58%), Positives = 245/325 (75%), Gaps = 1/325 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALE  +  I++ +GKG+IM+L S  S  + +E + + SL LDIALG+GG P+GR+ 
Sbjct: 4   EKDKALELTVGIIEKRFGKGSIMKL-SDPSFRQTVEFIPTSSLALDIALGVGGIPRGRVA 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPE SGKTTLA H IAQ+QK G   A++D EHALD  YA   GV+L  LLISQPDTG
Sbjct: 63  EIFGPEGSGKTTLAQHIIAQAQKMGEKAAYIDVEHALDPKYASTCGVNLDELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+AL I + LVRS A+ +IVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT+SI
Sbjct: 123 EEALGIAEELVRSAAIGVIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTASI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +++  +VFINQ+R K+GVMFG+PE T GG ALKFYSSVR+D+RR+ +IK      G + 
Sbjct: 183 GQTRTAVVFINQLREKVGVMFGNPEVTPGGRALKFYSSVRIDLRRIETIKQGTVAVGTRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R KVVKNK+A PF+  EFDIM+  GIS  G LIDLGV + ++ K+GA+FS+   RLGQGR
Sbjct: 243 RAKVVKNKVAPPFRTAEFDIMFDSGISREGNLIDLGVSSEVIRKAGAFFSYGDIRLGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
           E++K +L  N ++A+ IE  +R +A
Sbjct: 303 ESAKNYLAANPDLAQEIEEKIRASA 327


>gi|15807331|ref|NP_296061.1| recombinase A [Deinococcus radiodurans R1]
 gi|6226893|sp|P42443|RECA_DEIRA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|6460153|gb|AAF11887.1|AE002065_4 recA protein [Deinococcus radiodurans R1]
 gi|2251089|dbj|BAA21330.1| RecA [Deinococcus radiodurans]
 gi|3478632|gb|AAC33148.1| DNA polymerase [Deinococcus radiodurans R1]
          Length = 363

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/318 (58%), Positives = 254/318 (79%), Gaps = 3/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++SKA+E A+SQI++ +GKG+IM+LG++  +   ++VVS+GSL LD+ALG+GG P+GRI 
Sbjct: 17  ERSKAIETAMSQIEKAFGKGSIMKLGAESKL--DVQVVSTGSLSLDLALGVGGIPRGRIT 74

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPES GKTTLAL  +AQ+QK GGTCAF+DAEHALD +YAR LGV+   LL+SQPD G
Sbjct: 75  EIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNG 134

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI ++LVRSGA+D++V+DSVAALTPRAEIEGDMG+SLPG+QARLMSQALRKLT+ +
Sbjct: 135 EQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAIL 194

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQ 249
           S++    +FINQ+R KIGVM+G+PETTTGG ALKFY+SVRLD+R++G   K  +    N 
Sbjct: 195 SKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIGQPTKVGNDAVANT 254

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            ++K VKNK+A+PFK+VE  ++YG+G     +L+ L     I+ K+G+++S+  +R+GQG
Sbjct: 255 VKIKTVKNKVAAPFKEVELALVYGKGFDQLSDLVGLAADMDIIKKAGSFYSYGDERIGQG 314

Query: 310 RENSKIFLRENIEIAENI 327
           +E +  ++ E  E+ + I
Sbjct: 315 KEKTIAYIAERPEMEQEI 332


>gi|142092|gb|AAA22031.1| DNA-repair protein (recA) [Anabaena variabilis]
          Length = 358

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/322 (60%), Positives = 248/322 (77%), Gaps = 3/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL   L+QI+R +GKGAIM+LG    +   +E +S+G+L LD+ALG GG P+GR++E
Sbjct: 10  KQKALTMVLNQIERSFGKGAIMRLGDATRMR--VETISTGALTLDLALG-GGLPRGRVIE 66

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH IA+ QK GG  AFVDAE ALD  YA  LGVD++NLL+SQPDTGE
Sbjct: 67  IYGPESSGKTTVALHAIAEVQKEGGIAAFVDAEQALDPTYASALGVDIQNLLVSQPDTGE 126

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
            ALEI D LV S AVDI+VIDSVAAL PRAEIEGDMG++  G+QARLMSQALRK+T +I 
Sbjct: 127 SALEIVDQLVPSAAVDIVVIDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKITGNIG 186

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S C ++FINQ+R KIGV +GSPETTTGGNALKFY+SVRLDIRR+ ++K      GN+ +
Sbjct: 187 KSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGTDEFGNRVK 246

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV KNK+A PF+  EFDI++G+G+S  G L+DL  +  I+ + GAW+S+ G  + QGR+
Sbjct: 247 VKVAKNKVAPPFRIAEFDIIFGKGVSTLGCLVDLAEETGILLRKGAWYSYNGDNISQGRD 306

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
           N+  +L E  E AE I+  +R+
Sbjct: 307 NAIKYLEEKPEFAEQIKQQVRE 328


>gi|58415371|emb|CAH57100.1| recA protein [Vibrio alginolyticus]
 gi|58415373|emb|CAH57101.1| recA protein [Vibrio alginolyticus]
 gi|58415375|emb|CAH57102.1| recA protein [Vibrio alginolyticus]
 gi|58415377|emb|CAH57103.1| recA protein [Vibrio alginolyticus]
 gi|58415379|emb|CAH57104.1| recA protein [Vibrio alginolyticus]
 gi|215271692|emb|CAR57879.1| recombination-repair protein [Vibrio alginolyticus]
 gi|215271694|emb|CAR57880.1| recombination-repair protein [Vibrio alginolyticus]
 gi|215271696|emb|CAR57881.1| recombination-repair protein [Vibrio alginolyticus]
 gi|215271698|emb|CAR57882.1| recombination-repair protein [Vibrio alginolyticus]
          Length = 265

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/267 (66%), Positives = 225/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYG+G +  GEL+DLGVK  +V+K+GA
Sbjct: 239 MYGQGFNREGELVDLGVKHKLVEKAGA 265


>gi|307702751|ref|ZP_07639703.1| protein RecA [Streptococcus oralis ATCC 35037]
 gi|307623867|gb|EFO02852.1| protein RecA [Streptococcus oralis ATCC 35037]
          Length = 342

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/312 (58%), Positives = 243/312 (77%), Gaps = 6/312 (1%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+Q
Sbjct: 1   MRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG  AF+DAEHALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++VID
Sbjct: 59  KEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG
Sbjct: 119 SVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEF 268
           +PETT GG ALKFY+SVRLD+R    IK     KD+  G +T++KVVKNK+A PFK+   
Sbjct: 179 NPETTPGGRALKFYASVRLDVRGSTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAFV 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           +IMYGEGIS  GEL+ +     I+ K+GAW+S+KG+++GQG EN+K +L ++ EI + I+
Sbjct: 239 EIMYGEGISKTGELLKIASDLDIIQKAGAWYSYKGEKIGQGSENAKKYLADHPEIFDAID 298

Query: 329 SLLRQNAGLVAD 340
             +R   GL+ D
Sbjct: 299 HQVRVQYGLIED 310


>gi|170077054|ref|YP_001733692.1| recombinase A [Synechococcus sp. PCC 7002]
 gi|132240|sp|P14582|RECA_SYNP2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|154602|gb|AAA88636.1| recA [Synechococcus sp.]
 gi|169884723|gb|ACA98436.1| recA protein (recombinase A) [Synechococcus sp. PCC 7002]
          Length = 348

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/328 (56%), Positives = 247/328 (75%), Gaps = 4/328 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  DK KAL   L+QI+R +GKGAIM+LG    +   +  + SG+L LD A+G GGFP+G
Sbjct: 6   NNPDKEKALNLVLNQIERNFGKGAIMRLGDAAQM--KVATIPSGALTLDQAMG-GGFPRG 62

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD  Y+  LGVD++NLL++QP
Sbjct: 63  RIVEIYGPESSGKTTVALHAIAEVQKAGGVAAFIDAEHALDPTYSAALGVDIENLLVAQP 122

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GE ALEI D LVRS AVD+IVIDSVAAL PRAEIEG+MG+   G+QARLMS+ALRK+ 
Sbjct: 123 DNGESALEIADQLVRSAAVDLIVIDSVAALVPRAEIEGEMGDVQVGLQARLMSKALRKIA 182

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSIT 246
            ++ RS C ++F+NQ+R KIG+ +G+PE TTGG ALKFY+SVRLDIRR+ ++K   +   
Sbjct: 183 GNMGRSGCTVIFLNQLRQKIGISYGNPEVTTGGTALKFYASVRLDIRRIQTLKKGSEGEF 242

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G + +VKV KNK+A PF+  EFDI++G+GIS  G ++DL  +  ++ + GAW+S++G  +
Sbjct: 243 GIRAKVKVAKNKVAPPFRIAEFDIIFGKGISRVGCMLDLAEQTGVITRKGAWYSYEGDNI 302

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQN 334
            QGR+N+  +L EN ++A  +   +R+N
Sbjct: 303 AQGRDNAVKYLEENPDVAAIVTQKVREN 330


>gi|54792481|emb|CAE45620.1| recombination-repair protein [Vibrio tasmaniensis]
 gi|58415660|emb|CAH57244.1| recA protein [Vibrio tasmaniensis]
          Length = 258

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/260 (69%), Positives = 221/260 (85%), Gaps = 2/260 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELIDLG 286
           E  I+YG+G +  GELIDLG
Sbjct: 239 ETQILYGKGFNREGELIDLG 258


>gi|270308855|ref|YP_003330913.1| recombination protein RecA [Dehalococcoides sp. VS]
 gi|270154747|gb|ACZ62585.1| recombination protein RecA [Dehalococcoides sp. VS]
          Length = 337

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/325 (58%), Positives = 245/325 (75%), Gaps = 1/325 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALE  +  I++ +GKG+IM+L S  S  + +E + + SL LDIALG+GG P+GRI 
Sbjct: 4   EKDKALELTVGIIEKRFGKGSIMKL-SDPSFRQTVEFIPTSSLALDIALGVGGIPRGRIA 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPE SGKTTLA H IAQ+QK G   A++D EHALD  YA   GV+L  LLISQPDTG
Sbjct: 63  EIFGPEGSGKTTLAQHIIAQAQKMGEKAAYIDVEHALDPKYASTCGVNLDELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+AL I + LVRS A+ +IVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLTSSI
Sbjct: 123 EEALGIAEELVRSTAIGVIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTSSI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +++  ++FINQ+R K+GVMFG+PE T GG ALKFYSSVR+D+RR+ +IK      G + 
Sbjct: 183 GQTRTAVIFINQLREKVGVMFGNPEVTPGGRALKFYSSVRIDLRRIETIKQGTIAVGTRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R KVVKNK+A PF+  EFDIM+  GIS  G LIDLGV + ++ K+GA+FS+   RLGQGR
Sbjct: 243 RAKVVKNKVAPPFRTAEFDIMFDSGISREGNLIDLGVTSEVIRKAGAFFSYGDIRLGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
           E++K +L  N ++A+ IE  +R +A
Sbjct: 303 ESAKNYLAANPDLAQEIEEKIRASA 327


>gi|54792469|emb|CAE45614.1| recombination-repair protein [Vibrio nereis]
 gi|58415588|emb|CAH57208.1| recA protein [Vibrio nereis]
          Length = 259

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/261 (68%), Positives = 222/261 (85%), Gaps = 2/261 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELIDLGV 287
           E  I+YG+G +  GELIDLGV
Sbjct: 239 ETQILYGQGFNREGELIDLGV 259


>gi|58415367|emb|CAH57098.1| recA protein [Vibrio aerogenes]
          Length = 265

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/267 (66%), Positives = 225/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRAM--DVESVSTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCLCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKVAAPFKEANTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYG+G +  GEL+DLGVK  +++K+GA
Sbjct: 239 MYGQGFNREGELVDLGVKHKMIEKAGA 265


>gi|54792441|emb|CAE45600.1| recombination-repair protein [Vibrio gallicus]
 gi|58415487|emb|CAH57158.1| recA protein [Vibrio gallicus]
          Length = 259

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/261 (68%), Positives = 222/261 (85%), Gaps = 2/261 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG   ++   +E +S+GSL LD+ALG GG P GRIVE+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRLGDNKTM--DVETISTGSLSLDVALGAGGLPMGRIVEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G TCAFVDAEHALD IYA+KLGVD++ LL+SQPDTGEQALEI D L R
Sbjct: 59  LTLELIAAAQREGKTCAFVDAEHALDPIYAQKLGVDIEQLLVSQPDTGEQALEICDALAR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 119 SGAVDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 178

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D I GN+TR+KVVKNK+A+P
Sbjct: 179 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEIVGNETRIKVVKNKIAAP 238

Query: 263 FKQVEFDIMYGEGISFFGELI 283
           FKQ E  IMYG+G +  GELI
Sbjct: 239 FKQAETQIMYGKGFNREGELI 259


>gi|313887018|ref|ZP_07820718.1| RecA protein [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923544|gb|EFR34353.1| RecA protein [Porphyromonas asaccharolytica PR426713P-I]
 gi|332176934|gb|AEE12624.1| Protein recA [Porphyromonas asaccharolytica DSM 20707]
          Length = 378

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/319 (57%), Positives = 240/319 (75%), Gaps = 5/319 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KALE  + +IQ+ +GKGAIM +       E + V+ SGSL LDIALG+GG+P+GRI+E
Sbjct: 20  KMKALETTMGRIQKQFGKGAIMNMADDA--VEDVSVIPSGSLTLDIALGVGGYPRGRIIE 77

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPESSGKTTLA+H IA++QK GG  A +DAEHA D  YA+ LGVD+  L ISQPD GE
Sbjct: 78  IFGPESSGKTTLAIHAIAEAQKLGGIAAIIDAEHAFDPTYAQALGVDISRLWISQPDDGE 137

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL+I + L+RS AVDI+V+DSVAALTP+AEIEG+MG++  G+ ARLMS+A+RK+T+++S
Sbjct: 138 QALDIAEQLIRSSAVDILVVDSVAALTPKAEIEGEMGDTQVGLHARLMSRAMRKITAAVS 197

Query: 192 RSKCILVFINQMRMKIGVMF---GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           RSK   +FINQ+RMKI   +   G  E TTGGNALKFYSSVRLDIR    IK  D + G 
Sbjct: 198 RSKTCCIFINQLRMKISSGYSPTGPSEVTTGGNALKFYSSVRLDIRAYKQIKKGDDVVGK 257

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
            T V+VVKNK+A PF++ EFDI++G+GI+  GE+ID      I+ KSG+W+S++G  +GQ
Sbjct: 258 VTSVRVVKNKVAPPFRRAEFDILFGQGINRVGEIIDAATDMGILKKSGSWYSYQGNNIGQ 317

Query: 309 GRENSKIFLRENIEIAENI 327
           GR+  K  L +N E+A+ +
Sbjct: 318 GRDAVKELLDDNPELADEV 336


>gi|306517927|emb|CBL53387.1| recombination-repair protein [Photobacterium rosenbergii]
          Length = 255

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/256 (70%), Positives = 218/256 (85%), Gaps = 2/256 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG   ++   +E VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q
Sbjct: 1   MKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAAAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K G TCAF+DAEHALD IYARKLGVD+  LL+SQPDTGEQALEI D L RSGAVDI+V+D
Sbjct: 59  KQGKTCAFIDAEHALDPIYARKLGVDIDQLLVSQPDTGEQALEIADALARSGAVDILVVD 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP+AEIEG+MG+S  G+QAR++SQA+RK+T ++ +S C+ +FINQ+RMKIGVMFG
Sbjct: 119 SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKITGNLKQSNCMCIFINQIRMKIGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ E  I+Y
Sbjct: 179 NPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKQAETQILY 238

Query: 273 GEGISFFGELIDLGVK 288
           G+G + +GELIDLGVK
Sbjct: 239 GKGFNRYGELIDLGVK 254


>gi|58177549|pdb|1XP8|A Chain A, "deinococcus Radiodurans Reca In Complex With Atp-Gamma-S"
          Length = 366

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/318 (58%), Positives = 254/318 (79%), Gaps = 3/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++SKA+E A+SQI++ +GKG+IM+LG++  +   ++VVS+GSL LD+ALG+GG P+GRI 
Sbjct: 20  ERSKAIETAMSQIEKAFGKGSIMKLGAESKL--DVQVVSTGSLSLDLALGVGGIPRGRIT 77

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPES GKTTLAL  +AQ+QK GGTCAF+DAEHALD +YAR LGV+   LL+SQPD G
Sbjct: 78  EIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNG 137

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI ++LVRSGA+D++V+DSVAALTPRAEIEGDMG+SLPG+QARLMSQALRKLT+ +
Sbjct: 138 EQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAIL 197

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQ 249
           S++    +FINQ+R KIGVM+G+PETTTGG ALKFY+SVRLD+R++G   K  +    N 
Sbjct: 198 SKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIGQPTKVGNDAVANT 257

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            ++K VKNK+A+PFK+VE  ++YG+G     +L+ L     I+ K+G+++S+  +R+GQG
Sbjct: 258 VKIKTVKNKVAAPFKEVELALVYGKGFDQLSDLVGLAADMDIIKKAGSFYSYGDERIGQG 317

Query: 310 RENSKIFLRENIEIAENI 327
           +E +  ++ E  E+ + I
Sbjct: 318 KEKTIAYIAERPEMEQEI 335


>gi|54792495|emb|CAE45627.1| recombination-repair protein [Vibrio nigripulchritudo]
 gi|58415590|emb|CAH57209.1| recA protein [Vibrio nigripulchritudo]
          Length = 256

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/258 (69%), Positives = 220/258 (85%), Gaps = 2/258 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD IYA+KLGVD++ LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIEALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIKD D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELID 284
           E  IMYG+G +  GELID
Sbjct: 239 ETQIMYGQGFNREGELID 256


>gi|58415560|emb|CAH57194.1| recA protein [Vibrio metschnikovii]
 gi|58415562|emb|CAH57195.1| recA protein [Vibrio metschnikovii]
          Length = 265

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/267 (67%), Positives = 224/267 (83%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMLLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAS 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGV + +LL+SQPDTGEQALEI D L RSGAVD+IV
Sbjct: 59  AQREGKTCAFIDAEHALDPIYAQKLGVKINDLLVSQPDTGEQALEICDALARSGAVDVIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYG+G +  GEL+DLGVK  +++KSGA
Sbjct: 239 MYGQGFNREGELVDLGVKHKLIEKSGA 265


>gi|179185261|gb|ACB78176.1| RecA [Aliivibrio finisterrensis]
          Length = 262

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/264 (68%), Positives = 223/264 (84%), Gaps = 2/264 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA 
Sbjct: 1   SIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD++V
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVIGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDK 294
           +YG+G +  GELIDLGVK  +VDK
Sbjct: 239 LYGKGFNREGELIDLGVKHKLVDK 262


>gi|13249161|gb|AAK16709.1| RecA [Streptococcus agalactiae ATCC 13813]
          Length = 340

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/328 (57%), Positives = 248/328 (75%), Gaps = 7/328 (2%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG +    + ++V+SSGSL LDIALG GG+PKGRIVEIYGPESSGKTT+ALH +AQ+Q
Sbjct: 1   MRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIVEIYGPESSGKTTVALHAVAQAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG  AF+DAEHALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+D
Sbjct: 59  KEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQDLEIAGKLIDSGAVDLVVVD 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL PRAEI+GD+G+S  G+QAR+M QA+ KLT+SI+++K I +FINQ+R K+GVMFG
Sbjct: 119 SVAALVPRAEIDGDIGDSHVGLQARMMMQAMHKLTASINKTKTIAIFINQLREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEF 268
           +PETT GG ALKFYSSVRLD+R    IK     KD   G +T++KVVKNK+A PF++   
Sbjct: 179 NPETTPGGRALKFYSSVRLDVRGNTQIKGTGEHKDHNVGKETKIKVVKNKVAPPFREAFV 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           +IMYGEGIS  GELI +     I+ K+GAW+S+ G+++GQG EN+K +L +N  I + I+
Sbjct: 239 EIMYGEGISRTGELIKIASDLDIIQKAGAWYSYNGEKIGQGSENAKKYLADNPAIFDEID 298

Query: 329 SLLRQNAGLVA-DSLLQEPAINTKDDAD 355
             +R + G+   DS +Q   +  K++AD
Sbjct: 299 HKVRVHFGMTEDDSPVQSELVEEKNEAD 326


>gi|58415385|emb|CAH57107.1| recA protein [Vibrio campbellii]
 gi|58415387|emb|CAH57108.1| recA protein [Vibrio campbellii]
          Length = 265

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/267 (67%), Positives = 224/267 (83%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAMKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 MYGQGFNREGELIDLGVKHKLVEKAGA 265


>gi|241896398|ref|ZP_04783694.1| recombination protein A [Weissella paramesenteroides ATCC 33313]
 gi|241870378|gb|EER74129.1| recombination protein A [Weissella paramesenteroides ATCC 33313]
          Length = 388

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/315 (58%), Positives = 248/315 (78%), Gaps = 8/315 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++  AL  AL +I++ +GKG++M+LG   S F  +E   +GSL LD+ALGIGG+PKGR++
Sbjct: 29  ERQTALNDALKKIEKSFGKGSVMKLGD--SRFTKVESTPTGSLKLDVALGIGGYPKGRVI 86

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH +A++QK GG  A++DAE+A+D  YA+ LGVD+  LL+SQPDTG
Sbjct: 87  EIYGPESSGKTTLALHAVAEAQKNGGIVAYIDAENAMDVEYAKALGVDVDELLLSQPDTG 146

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ L I D L+ SGA+D++VIDSVAALTP+AEI+G++G+S  G+QAR+MSQALRK++ +I
Sbjct: 147 EQGLAIADALIASGAIDMVVIDSVAALTPKAEIDGEIGDSSVGLQARMMSQALRKMSGAI 206

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI----KDKDSI- 245
            ++    +FINQ+R KIGVMFG+PETT GG ALKFYSSVRLD+RR G I     D D+I 
Sbjct: 207 LKTGTTAIFINQLREKIGVMFGNPETTPGGRALKFYSSVRLDVRRKGGIDATKADGDNIK 266

Query: 246 -TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
             GN TR+KVVKNK+A+PF++VE +I++G+GIS  GE+IDL     I+ K+G+WFS+KG+
Sbjct: 267 SVGNLTRIKVVKNKVAAPFREVEVEILFGKGISKTGEMIDLAADKEIIIKAGSWFSYKGE 326

Query: 305 RLGQGRENSKIFLRE 319
           ++GQG+ N   +L E
Sbjct: 327 KIGQGKVNVIRWLEE 341


>gi|52630803|gb|AAU84869.1| RecA [Burkholderia sp. LMG 19510]
          Length = 236

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 177/236 (75%), Positives = 211/236 (89%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGT AF+DAEHA
Sbjct: 1   VVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YARKLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+
Sbjct: 61  LDIQYARKLGVNVNDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY
Sbjct: 121 MGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFY 180

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           +SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A PF++  FDI+YGEGIS  GE+
Sbjct: 181 ASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPPFREAIFDILYGEGISRQGEV 236


>gi|320449505|ref|YP_004201601.1| protein RecA [Thermus scotoductus SA-01]
 gi|320149674|gb|ADW21052.1| protein RecA [Thermus scotoductus SA-01]
          Length = 340

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/326 (57%), Positives = 255/326 (78%), Gaps = 3/326 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALE AL  I++ +GKGA+M+LG    +   ++V+ +GSLGLD+ALGIGG P+GR++
Sbjct: 4   NKRKALENALKTIEKEFGKGAVMRLGEMPKL--QVDVIPTGSLGLDLALGIGGIPRGRVI 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPES GKTTLAL  IAQ+QK GG  AFVDAEHALD +YA+KLGV +++LL+SQPDTG
Sbjct: 62  EIYGPESGGKTTLALTIIAQAQKQGGVAAFVDAEHALDPLYAQKLGVKVEDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI ++L RSGAVD+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRKLT+ +
Sbjct: 122 EQALEIVELLARSGAVDVIVVDSVAALVPKAEIEGEMGDQHVGLQARLMSQALRKLTAVL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQ 249
           S+S    +FINQ+R K+GVM+G+PETT GG ALKFYSSVRLD+R+ G  IK  +   G +
Sbjct: 182 SKSNTAAIFINQVREKVGVMYGNPETTPGGRALKFYSSVRLDVRKSGQPIKVGNEAVGIK 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PF++ E +I +G G+    +L+++ V A++++K+G+WFS+   RLGQG
Sbjct: 242 VKVKVVKNKLAPPFREAELEIYFGRGLDPVMDLVNVAVAANVIEKAGSWFSYGEIRLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNA 335
           +E +  +LRE  E+ E I + + + A
Sbjct: 302 KEKAADYLRERPELLEEIRAKVLERA 327


>gi|146325679|sp|P0C2U5|RECA_LACLC RecName: Full=Protein RecA; AltName: Full=Recombinase A
          Length = 387

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/337 (55%), Positives = 255/337 (75%), Gaps = 10/337 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL  AL+ I++ +GKG++M+LG   +  + + VVSSGSL LDIALG GG+PKGRIV
Sbjct: 19  ERDKALADALALIEKDFGKGSLMRLGEAAN--QKVSVVSSGSLALDIALGAGGYPKGRIV 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A  QK GG  AF+DAE+ALD  YA+ LGV++  LL+SQPD G
Sbjct: 77  EIYGPESSGKTTVALHAVAAVQKEGGIAAFIDAENALDPEYAKALGVNIDELLLSQPDYG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ L+I + L+ SGAVD++VIDSVAAL P+AEI+G++G+S  G+QAR+MSQA+RKL   I
Sbjct: 137 EQGLQIAEKLITSGAVDLVVIDSVAALVPKAEIDGEIGDSSVGLQARMMSQAMRKLAGHI 196

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK------DKDS 244
           +++K   +FINQ+R K+GVMFGSPETT GG ALKFY+SVRLD+R  GS K      D  +
Sbjct: 197 NKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR--GSTKIEEGSGDNKT 254

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
             G  T++KVVKNK+A PFK    DIM+GEGIS  GEL+++ V+  I+ KSGAWF++  +
Sbjct: 255 QIGKITKIKVVKNKVAPPFKVALVDIMFGEGISSTGELLNIAVEEGIIKKSGAWFAYNDE 314

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           ++GQG E +K +L+E+ ++ + I+  +R   GL+ DS
Sbjct: 315 KIGQGAEKAKNYLKEHQDVFDEIDHKVRAAHGLLDDS 351


>gi|551877|gb|AAA25216.1| recA [Lactococcus lactis]
          Length = 365

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/337 (55%), Positives = 255/337 (75%), Gaps = 10/337 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL  AL+ I++ +GKG++M+LG   +  + + VVSSGSL LDIALG GG+PKGRIV
Sbjct: 19  ERDKALADALALIEKDFGKGSLMRLGEAAN--QKVSVVSSGSLALDIALGAGGYPKGRIV 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A  QK GG  AF+DAE+ALD  YA+ LGV++  LL+SQPD G
Sbjct: 77  EIYGPESSGKTTVALHAVAAVQKEGGIAAFIDAENALDPEYAKALGVNIDELLLSQPDYG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ L+I + L+ SGAVD++VIDSVAAL P+AEI+G++G+S  G+QAR+MSQA+RKL   I
Sbjct: 137 EQGLQIAEKLITSGAVDLVVIDSVAALVPKAEIDGEIGDSSVGLQARMMSQAMRKLAGHI 196

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK------DKDS 244
           +++K   +FINQ+R K+GVMFGSPETT GG ALKFY+SVRLD+R  GS K      D  +
Sbjct: 197 NKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR--GSTKIEEGSGDNKT 254

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
             G  T++KVVKNK+A PFK    DIM+GEGIS  GEL+++ V+  I+ KSGAWF++  +
Sbjct: 255 QIGKITKIKVVKNKVAPPFKVALVDIMFGEGISSTGELLNIAVEEGIIKKSGAWFAYNDE 314

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           ++GQG E +K +L+E+ ++ + I+  +R   GL+ DS
Sbjct: 315 KIGQGAEKAKNYLKEHQDVFDEIDHKVRAAHGLLDDS 351


>gi|54792457|emb|CAE45608.1| recombination-repair protein [Vibrio neptunius]
 gi|58415586|emb|CAH57207.1| recA protein [Vibrio neptunius]
          Length = 258

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/260 (68%), Positives = 220/260 (84%), Gaps = 2/260 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELIDLG 286
           E  IMYG G +  GELIDLG
Sbjct: 239 ETQIMYGAGFNREGELIDLG 258


>gi|116511213|ref|YP_808429.1| recombinase A [Lactococcus lactis subsp. cremoris SK11]
 gi|125623243|ref|YP_001031726.1| recombinase A [Lactococcus lactis subsp. cremoris MG1363]
 gi|123025606|sp|Q031W5|RECA_LACLS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|146325680|sp|A2RI85|RECA_LACLM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|116106867|gb|ABJ72007.1| RecA protein [Lactococcus lactis subsp. cremoris SK11]
 gi|124492051|emb|CAL96979.1| recombination protein A [Lactococcus lactis subsp. cremoris MG1363]
 gi|300069993|gb|ADJ59393.1| recombinase A [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 387

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/337 (55%), Positives = 255/337 (75%), Gaps = 10/337 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL  AL+ I++ +GKG++M+LG   +  + + VVSSGSL LDIALG GG+PKGRIV
Sbjct: 19  ERDKALADALALIEKDFGKGSLMRLGEAAN--QKVSVVSSGSLALDIALGAGGYPKGRIV 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A  QK GG  AF+DAE+ALD  YA+ LGV++  LL+SQPD G
Sbjct: 77  EIYGPESSGKTTVALHAVAAVQKEGGIAAFIDAENALDPEYAKALGVNIDELLLSQPDYG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ L+I + L+ SGAVD++VIDSVAAL P+AEI+G++G+S  G+QAR+MSQA+RKL   I
Sbjct: 137 EQGLQIAEKLITSGAVDLVVIDSVAALVPKAEIDGEIGDSSVGLQARMMSQAMRKLAGHI 196

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK------DKDS 244
           +++K   +FINQ+R K+GVMFGSPETT GG ALKFY+SVRLD+R  GS K      D  +
Sbjct: 197 NKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR--GSTKIEEGSGDNKT 254

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
             G  T++KVVKNK+A PFK    DIM+GEGIS  GEL+++ V+  I+ KSGAWF++  +
Sbjct: 255 QIGKITKIKVVKNKVAPPFKVALVDIMFGEGISSTGELLNIAVEEGIIKKSGAWFAYNDE 314

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           ++GQG E +K +L+E+ ++ + I+  +R   GL+ DS
Sbjct: 315 KIGQGAEKAKNYLKEHQDVFDEIDHKVRAAHGLLDDS 351


>gi|54792166|emb|CAE54399.1| recombination-repair protein [Vibrio coralliilyticus]
 gi|58415431|emb|CAH57130.1| recA protein [Vibrio coralliilyticus]
          Length = 260

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/260 (68%), Positives = 220/260 (84%), Gaps = 2/260 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 3   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 60

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 61  LIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 120

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 121 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 180

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 181 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 240

Query: 267 EFDIMYGEGISFFGELIDLG 286
           E  IMYG G +  GELIDLG
Sbjct: 241 ETQIMYGAGFNREGELIDLG 260


>gi|15672336|ref|NP_266510.1| recombinase A [Lactococcus lactis subsp. lactis Il1403]
 gi|146325677|sp|P0C2U4|RECA1_LACLA RecName: Full=Protein RecA, chromosomal; AltName: Full=Recombinase
           A
 gi|12723223|gb|AAK04452.1|AE006272_6 RecA protein [Lactococcus lactis subsp. lactis Il1403]
 gi|326405935|gb|ADZ63006.1| DNA-dependent recombination protein RecA [Lactococcus lactis subsp.
           lactis CV56]
          Length = 387

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/346 (54%), Positives = 258/346 (74%), Gaps = 10/346 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL  AL+ I++ +GKG++M+LG   +  + + VVSSGSL LDIALG GG+PKGRIV
Sbjct: 19  ERDKALADALALIEKDFGKGSLMRLGEAAN--QKVSVVSSGSLALDIALGAGGYPKGRIV 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A  QK GG  AF+DAE+ALD  YA+ LGV++  LL+SQPD G
Sbjct: 77  EIYGPESSGKTTVALHAVAAVQKEGGIAAFIDAENALDPEYAKALGVNIDELLLSQPDYG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ L+I + L+ SGAVD++VIDSVAAL P+AEI+G++G+S  G+QAR+MSQA+RKL   I
Sbjct: 137 EQGLQIAEKLITSGAVDLVVIDSVAALVPKAEIDGEIGDSSVGLQARMMSQAMRKLAGHI 196

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK------DKDS 244
           +++K   +FINQ+R K+GVMFGSPETT GG ALKFY+SVRLD+R  GS K      D  +
Sbjct: 197 NKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR--GSTKIEEGSGDNKT 254

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
             G  T++KVVKNK+A PFK    DIM+GEGIS  GEL+++ V   I+ KSGAWF++  +
Sbjct: 255 QIGKITKIKVVKNKVAPPFKVALVDIMFGEGISRTGELLNIAVDEGIIKKSGAWFAYNDE 314

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           ++GQG E +K +L+E+ EI + I+  +R   GL+ ++ + E   +T
Sbjct: 315 KIGQGAEKAKNYLKEHQEIFDEIDHKVRTAHGLLDEAEVAETTEDT 360


>gi|58415574|emb|CAH57201.1| recA protein [Vibrio mytili]
 gi|58415672|emb|CAH57250.1| recA protein [Vibrio tubiashii]
          Length = 265

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 177/267 (66%), Positives = 224/267 (83%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYG G +  GEL+DLGVK  +V+K+GA
Sbjct: 239 MYGRGFNREGELVDLGVKHKLVEKAGA 265


>gi|237736676|ref|ZP_04567157.1| RecA protein [Fusobacterium mortiferum ATCC 9817]
 gi|229420538|gb|EEO35585.1| RecA protein [Fusobacterium mortiferum ATCC 9817]
          Length = 367

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/320 (57%), Positives = 244/320 (76%), Gaps = 3/320 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           V K KALE A+ +I + +G+G+IM+LG+  ++   IEV+ +GS+ +D+ALG+GG PKGRI
Sbjct: 8   VSKEKALEQAIGKISKEFGEGSIMKLGNNLNM--EIEVIPTGSINIDMALGVGGVPKGRI 65

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +E+YG ESSGKTT+ALH  AQ+QK  G  A++DAEHALD  YA+ LGVD+  LLISQPD 
Sbjct: 66  IEVYGAESSGKTTIALHIAAQAQKNKGVVAYIDAEHALDPEYAKALGVDVDELLISQPDY 125

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D+LVRSGAVD+IV+DSVAAL P+AEI+G+M +   G+QARLMS+ALRKLT S
Sbjct: 126 GEQALEIADLLVRSGAVDLIVVDSVAALVPKAEIDGEMSDQQMGLQARLMSKALRKLTGS 185

Query: 190 ISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +++SK  ++FINQ+R KIG   FG   TTTGG ALKFY+SVR++++R+GS+K  D + GN
Sbjct: 186 LNKSKTTMIFINQIRDKIGGFGFGPQTTTTGGKALKFYASVRMEVKRIGSVKQGDDVIGN 245

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T VK+ KNK+A PFK+  F IMYG+GI+  GE+ +L +   +V KSG WFSF   RLGQ
Sbjct: 246 ETTVKITKNKVAPPFKEASFQIMYGKGITRVGEIFELAIDNDVVSKSGTWFSFGDIRLGQ 305

Query: 309 GRENSKIFLRENIEIAENIE 328
           G+EN K  L    E+   IE
Sbjct: 306 GKENVKNRLEVEKELFAQIE 325


>gi|289623210|emb|CAX51142.1| recA protein [Aeromonas veronii]
 gi|289623212|emb|CAX51143.1| recA protein [Aeromonas allosaccharophila]
 gi|289623226|emb|CAX51150.1| recA protein [Aeromonas media]
 gi|289623228|emb|CAX51151.1| recA protein [Aeromonas hydrophila]
          Length = 239

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/238 (75%), Positives = 208/238 (87%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L  IA++QK G TCAFVDAE
Sbjct: 2   IEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE
Sbjct: 62  HALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNALK
Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           FY+SVRLDIRR+G+IK+ D + GN+TRVKVVKNK+A PFKQ EF I YG GIS  GEL
Sbjct: 182 FYASVRLDIRRIGAIKEGDEVVGNETRVKVVKNKVAPPFKQAEFQIFYGAGISKEGEL 239


>gi|58415467|emb|CAH57148.1| recA protein [Vibrio fluvialis]
 gi|58415471|emb|CAH57150.1| recA protein [Vibrio fluvialis]
 gi|58415481|emb|CAH57155.1| recA protein [Vibrio furnissii]
 gi|58415483|emb|CAH57156.1| recA protein [Vibrio furnissii]
 gi|58415485|emb|CAH57157.1| recA protein [Vibrio furnissii]
          Length = 265

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/267 (67%), Positives = 224/267 (83%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I+ 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELISA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YAR+LGV +  LL+SQPDTGEQALEI D L RSGAVD+IV
Sbjct: 59  AQREGKTCAFIDAEHALDPVYARRLGVKIDELLVSQPDTGEQALEICDALARSGAVDVIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYG+G +  GELI+LGVK  +V+K+GA
Sbjct: 239 MYGQGFNREGELIELGVKHKLVEKAGA 265


>gi|218294700|ref|ZP_03495554.1| recA protein [Thermus aquaticus Y51MC23]
 gi|1350567|sp|P48296|RECA_THEAQ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|349151|gb|AAA27502.1| RecA protein [Thermus aquaticus]
 gi|461417|gb|AAA19796.1| DNA repair protein [Thermus aquaticus]
 gi|218244608|gb|EED11132.1| recA protein [Thermus aquaticus Y51MC23]
          Length = 340

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/326 (57%), Positives = 253/326 (77%), Gaps = 3/326 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+LE AL  I++ +GKGA+M+LG    +   ++V+ +GSLGLD+ALGIGG P+GR+ 
Sbjct: 4   NKRKSLENALKTIEKEFGKGAVMRLGEMPKL--QVDVIPTGSLGLDLALGIGGIPRGRVT 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPES GKTTLAL  IAQ+QK GG  AFVDAEHALD +YA+KLGVD++ LL+SQPDTG
Sbjct: 62  EIFGPESGGKTTLALTIIAQAQKGGGVAAFVDAEHALDPLYAKKLGVDVQELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI ++L RSGAVD+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRKLT+ +
Sbjct: 122 EQALEIVELLARSGAVDVIVVDSVAALVPKAEIEGEMGDQHVGLQARLMSQALRKLTAVL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQ 249
           S+S    +FINQ+R K+GVM+G+PETT GG ALKFYSSVRLD+R+ G  IK  +   G +
Sbjct: 182 SKSNTAAIFINQVREKVGVMYGNPETTPGGRALKFYSSVRLDVRKSGQPIKVGNEAVGIK 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PF++ E +I +G G+    +L+++ V A +++K+G+WFS+   RLGQG
Sbjct: 242 VKVKVVKNKLAPPFREAELEIYFGRGLDPVMDLVNVAVAAGVIEKAGSWFSYGEHRLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNA 335
           +E +  +LRE  E+ E I + + + A
Sbjct: 302 KEKAAEYLRERPELLEEIRAKVLERA 327


>gi|58415403|emb|CAH57116.1| recA protein [Vibrio cholerae]
 gi|58415566|emb|CAH57197.1| recA protein [Vibrio mimicus]
 gi|159146606|gb|ABW90747.1| recombinase A [Vibrio cholerae]
          Length = 265

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/267 (67%), Positives = 225/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYG+G +  GELIDLGVK  +V+KSGA
Sbjct: 239 MYGQGFNREGELIDLGVKHKMVEKSGA 265


>gi|119494626|ref|ZP_01624747.1| recombination protein [Lyngbya sp. PCC 8106]
 gi|119452050|gb|EAW33267.1| recombination protein [Lyngbya sp. PCC 8106]
          Length = 331

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/316 (57%), Positives = 239/316 (75%), Gaps = 3/316 (0%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E + SG+L LD+ALG GG PKGR++EIYGPESSGKTTLALH IA+ Q+ GG  AFVDAE
Sbjct: 11  VETIPSGALTLDLALG-GGIPKGRVIEIYGPESSGKTTLALHAIAEVQRAGGVAAFVDAE 69

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGVD++NLL+SQPDTGE ALE+ D LVRS AVDI+VIDSVAAL PRAEIE
Sbjct: 70  HALDPSYASVLGVDIENLLVSQPDTGEMALEVVDQLVRSVAVDIVVIDSVAALVPRAEIE 129

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRK+T +I +S C ++F+NQ+R KIG+ +G+PETTTGGNALK
Sbjct: 130 GEMGDAHMGLQARLMSQALRKITGNIGKSGCTVIFLNQLRQKIGITYGNPETTTGGNALK 189

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY SVRLDIRR+ ++K      G + +VKV KNK+A PF+  EFDI++G+GIS  G L+D
Sbjct: 190 FYCSVRLDIRRIQTLKKGTDEYGIRAKVKVAKNKVAPPFRIAEFDIIFGKGISTLGCLVD 249

Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
           L  +  I+ + G+W+S+    +GQGRE + I++ EN E   NIE L+R+   L   +++ 
Sbjct: 250 LAEETGIIKRKGSWYSYNSDNIGQGREKTIIYMEENPEFTANIEKLVREK--LDGGAVVS 307

Query: 345 EPAINTKDDADKDDTD 360
             ++   DDA+  + D
Sbjct: 308 SNSVGHVDDAEDYEND 323


>gi|303233258|ref|ZP_07319930.1| RecA protein [Atopobium vaginae PB189-T1-4]
 gi|302480648|gb|EFL43736.1| RecA protein [Atopobium vaginae PB189-T1-4]
          Length = 410

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/354 (55%), Positives = 263/354 (74%), Gaps = 5/354 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            ++   L+    +I++ +GKG+IM+ G  G   E +E + +G+L LD+ALGIGG P+GRI
Sbjct: 17  AERDAQLKLTTGEIEKKFGKGSIMKYGETGPDLE-VEAIPTGALSLDVALGIGGVPRGRI 75

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTL+L  +A++Q  GG  AF+DAEHALD  YA ++GVD+  +LISQP+ 
Sbjct: 76  IEIYGPESSGKTTLSLEILAEAQNLGGIVAFIDAEHALDPNYAARIGVDIDEVLISQPNN 135

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GE+ALEI DMLVRSGA+D+IVIDSVAAL PRAEI+G++G++  G+QARLMSQALRKL  S
Sbjct: 136 GEEALEICDMLVRSGAIDVIVIDSVAALVPRAEIDGEIGDTTVGLQARLMSQALRKLAGS 195

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +S+SK   +FINQ+R KIGVMFG+PETT GG ALKF+SSVRL+IRR+ ++K  + + GN+
Sbjct: 196 LSKSKTTCIFINQLREKIGVMFGNPETTPGGRALKFFSSVRLEIRRIETLKQGNDLIGNR 255

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            RV+VVKNK+A PFKQ EFDIMYG GIS  G  +D+ V   I +KSG+WFS+   RLGQG
Sbjct: 256 VRVRVVKNKVAPPFKQAEFDIMYGTGISKEGTTLDMAVDCGICEKSGSWFSYNDMRLGQG 315

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL-VADSLLQEPA---INTKDDADKDDT 359
           R+ +  +LREN ++ + I   ++   G+  +D    EPA    +T   A+K DT
Sbjct: 316 RQAASTYLRENPDLLDEITKQVKIAYGIEFSDDDTMEPAAAKTHTSAGAEKSDT 369


>gi|52630823|gb|AAU84879.1| RecA [Burkholderia sp. R701]
          Length = 237

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/237 (75%), Positives = 211/237 (89%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHA
Sbjct: 1   VVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+
Sbjct: 61  LDIQYAAKLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY
Sbjct: 121 MGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFY 180

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           +SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A PF++  FDI+YGEGIS  GE+I
Sbjct: 181 ASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPPFREAIFDILYGEGISRQGEVI 237


>gi|171915859|ref|ZP_02931329.1| recA protein [Verrucomicrobium spinosum DSM 4136]
          Length = 374

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/322 (56%), Positives = 246/322 (76%), Gaps = 3/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           ++K LE A+ QI + YG+G+I+++G +      I ++ +G+L +D ALGIGGFP+GR+VE
Sbjct: 21  RAKNLEMAIQQIHKDYGEGSILRMGEENRTE--ISIIPTGNLLIDQALGIGGFPRGRVVE 78

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTL L  IAQ+QKTGG  AF+D EHALD  YARKLGV ++ LL+SQP +GE
Sbjct: 79  VYGPESSGKTTLTLTVIAQAQKTGGLAAFIDVEHALDPNYARKLGVKMEELLVSQPSSGE 138

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           +AL I + LVRS A+D+IVIDSVAAL  R E+EG++G++  G QARLMS ALRKLT+ IS
Sbjct: 139 EALRICETLVRSNALDVIVIDSVAALVTRQELEGEIGDATVGAQARLMSAALRKLTAIIS 198

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQT 250
           +++   +F NQ+R K+GVMFG+PETT GG ALKFYSSVR+DIRR+G+IK  D + TGN+T
Sbjct: 199 KARTCCIFTNQIREKVGVMFGNPETTPGGKALKFYSSVRIDIRRIGAIKSSDGTTTGNRT 258

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A P+ + EFDIMY EGIS  G L+DL ++  I+ K G+W S+KG +L QGR
Sbjct: 259 KVKVVKNKLAPPYTEAEFDIMYNEGISGVGSLLDLALEYDILQKRGSWISYKGTQLAQGR 318

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           +  K  L+ +  +  ++E  ++
Sbjct: 319 DACKEALKADTALYADVEEQVK 340


>gi|284156789|gb|ACM45454.2| RecA [Aeromonas fluvialis]
          Length = 239

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/238 (75%), Positives = 208/238 (87%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L  IA++QK G TCAFVDAE
Sbjct: 2   IEAISNGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE
Sbjct: 62  HALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNALK
Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           FY+SVRLDIRR+G+IK+ D + GN+TRVKVVKNK+A PFKQ EF I YG GIS  GEL
Sbjct: 182 FYASVRLDIRRIGAIKEGDEVVGNETRVKVVKNKVAPPFKQAEFQIFYGAGISKEGEL 239


>gi|332071925|gb|EGI82413.1| protein RecA [Streptococcus pneumoniae GA17545]
 gi|332072028|gb|EGI82515.1| protein RecA [Streptococcus pneumoniae GA17570]
 gi|332072136|gb|EGI82622.1| protein RecA [Streptococcus pneumoniae GA41301]
          Length = 339

 Score =  378 bits (971), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/324 (56%), Positives = 248/324 (76%), Gaps = 5/324 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   MQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     K++  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTG 240

Query: 281 ELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLV-A 339
           EL+ +     I+ K+GAW+S+K +++GQG EN+K +L E+ EI + I+  +R   GL+  
Sbjct: 241 ELLKIASDLDIIKKAGAWYSYKDEKIGQGSENAKKYLAEHPEIFDEIDKQVRSKFGLIDG 300

Query: 340 DSLLQEPAINTKDDADKDDTDNVE 363
           + + ++   N KD+  K++  N E
Sbjct: 301 EEVSEQDTENKKDEPKKEEAVNEE 324


>gi|54792467|emb|CAE45613.1| recombination-repair protein [Vibrio xuii]
 gi|58415688|emb|CAH57258.1| recA protein [Vibrio xuii]
          Length = 258

 Score =  378 bits (971), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 177/260 (68%), Positives = 221/260 (85%), Gaps = 2/260 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELIDLG 286
           E  I+YG+G +  GELIDLG
Sbjct: 239 ETQILYGQGFNREGELIDLG 258


>gi|9309338|dbj|BAB03233.1| homologous recombination factor RecA [Streptococcus suis]
          Length = 343

 Score =  378 bits (971), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/319 (57%), Positives = 246/319 (77%), Gaps = 6/319 (1%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG +    + ++V+SSGSL +DIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+Q
Sbjct: 1   MRLGERAE--QKVQVMSSGSLSIDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG  AF+DAEHALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+D
Sbjct: 59  KDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVD 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +SI+++K + +FINQ+R K+GVMFG
Sbjct: 119 SVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEF 268
           +PETT GG ALKFY+SVR+D+R    IK     KD   G +T+VK+VKNK+A PFK+   
Sbjct: 179 NPETTPGGRALKFYASVRMDVRGNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEAVV 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           +IMYGEGIS  GELI++G    I+ K+GAW+S+ G+++GQG EN+K FL +N  I + I+
Sbjct: 239 EIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKIGQGSENAKKFLADNPAIFDEID 298

Query: 329 SLLRQNAGLVADSLLQEPA 347
             +R + GL+    ++E A
Sbjct: 299 RKIRVHYGLIEADGVEEVA 317


>gi|121544230|gb|ABM55726.1| RecA [Vibrio sp. RLUH-CZ]
          Length = 256

 Score =  378 bits (971), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/258 (68%), Positives = 219/258 (84%), Gaps = 2/258 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  CIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELID 284
           E  IMYG+G +  GELID
Sbjct: 239 ETQIMYGQGFNREGELID 256


>gi|215271682|emb|CAR57874.1| recombination-repair protein [Vibrio natriegens]
          Length = 262

 Score =  378 bits (971), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 176/262 (67%), Positives = 222/262 (84%), Gaps = 2/262 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEA 238

Query: 267 EFDIMYGEGISFFGELIDLGVK 288
              IMYG+G +  GEL+DLGVK
Sbjct: 239 NTQIMYGQGFNREGELVDLGVK 260


>gi|281490901|ref|YP_003352881.1| DNA-dependent recombination protein RecA [Lactococcus lactis subsp.
           lactis KF147]
 gi|281374659|gb|ADA64179.1| DNA-dependent recombination protein RecA, ATPase, AAA family
           [Lactococcus lactis subsp. lactis KF147]
          Length = 387

 Score =  378 bits (970), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/346 (54%), Positives = 258/346 (74%), Gaps = 10/346 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL  AL+ I++ +GKG++M+LG   +  + + VVSSGSL LDIALG GG+PKGRIV
Sbjct: 19  ERDKALADALALIEKDFGKGSLMRLGEAAN--QKVSVVSSGSLALDIALGAGGYPKGRIV 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A  QK GG  AF+DAE+ALD  YA+ LGV++  LL+SQPD G
Sbjct: 77  EIYGPESSGKTTVALHAVAAVQKEGGIAAFIDAENALDPEYAKALGVNIDELLLSQPDYG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ L+I + L+ SGAVD++VIDSVAAL P+AEI+G++G+S  G+QAR+MSQA+RKL   I
Sbjct: 137 EQGLQIAEKLITSGAVDLVVIDSVAALVPKAEIDGEIGDSSVGLQARMMSQAMRKLAGHI 196

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK------DKDS 244
           +++K   +FINQ+R K+GVMFGSPETT GG ALKFY+SVRLD+R  GS K      D  +
Sbjct: 197 NKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR--GSTKIEEGSGDNKT 254

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
             G  T++KVVKNK+A PFK    DIM+GEGIS  GEL+++ V   I+ KSGAWF++  +
Sbjct: 255 QIGKITKIKVVKNKVAPPFKVALVDIMFGEGISRTGELLNIAVDEGIIKKSGAWFAYNDE 314

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           ++GQG E +K +L+E+ EI + I+  +R   GL+ ++ + E   +T
Sbjct: 315 KIGQGAEKAKNYLKEHQEIFDEIDHKVRAAHGLLDEAEVVETTEDT 360


>gi|323128218|gb|ADX25515.1| recombinase A [Streptococcus dysgalactiae subsp. equisimilis ATCC
           12394]
          Length = 339

 Score =  378 bits (970), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/308 (59%), Positives = 240/308 (77%), Gaps = 6/308 (1%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+Q
Sbjct: 1   MRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG  AF+DAEHALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+D
Sbjct: 59  KEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVD 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG
Sbjct: 119 SVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEF 268
           +PETT GG ALKFY+SVRLD+R    IK     KDS  G +T++KVVKNK+A PFK  E 
Sbjct: 179 NPETTPGGRALKFYASVRLDVRGTTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEV 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++GQG EN+K +L ++ E+ + I+
Sbjct: 239 EIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKIGQGSENAKRYLADHPELFDEID 298

Query: 329 SLLRQNAG 336
             +R   G
Sbjct: 299 RKVRVKFG 306


>gi|304415656|gb|ADM30934.1| recombinant DNA repair protein [Vibrio areninigrae]
          Length = 251

 Score =  378 bits (970), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 176/250 (70%), Positives = 215/250 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 2   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQRAGKTCAFIDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGV + +LL+SQPDTGEQALEI D L RSGAVD++V+DSVAALTP+AEIEG+M
Sbjct: 62  DPVYAKKLGVQIDDLLVSQPDTGEQALEICDALARSGAVDVMVVDSVAALTPKAEIEGEM 121

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 122 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 181

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E  I+YG G +  GELIDLGV
Sbjct: 182 SVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQILYGAGFNREGELIDLGV 241

Query: 288 KASIVDKSGA 297
           K  +V+K+GA
Sbjct: 242 KHKLVEKAGA 251


>gi|304564479|gb|ADM45103.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 267

 Score =  378 bits (970), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/269 (66%), Positives = 227/269 (84%), Gaps = 2/269 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA
Sbjct: 1   GSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           ++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDII
Sbjct: 59  EAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDII 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GV
Sbjct: 119 VIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFD
Sbjct: 179 MFGNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFD 238

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IMYGEGIS  G ++D+G    I++KSGAW
Sbjct: 239 IMYGEGISREGSILDIGASIDIIEKSGAW 267


>gi|54792471|emb|CAE45615.1| recombination-repair protein [Vibrio chagasii]
 gi|58415397|emb|CAH57113.1| recA protein [Vibrio chagasii]
          Length = 256

 Score =  378 bits (970), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/258 (69%), Positives = 219/258 (84%), Gaps = 2/258 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELID 284
           E  I+YG+G +  GELID
Sbjct: 239 ETQILYGQGFNREGELID 256


>gi|54792443|emb|CAE45601.1| recombination-repair protein [Vibrio pacinii]
 gi|58415602|emb|CAH57215.1| recA protein [Vibrio pacinii]
          Length = 256

 Score =  378 bits (970), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/258 (68%), Positives = 219/258 (84%), Gaps = 2/258 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIKD D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELID 284
           E  I+YG+G +  GELID
Sbjct: 239 ETQILYGQGFNREGELID 256


>gi|54792152|emb|CAE54392.1| recombination-repair protein [Photobacterium phosphoreum]
 gi|58415361|emb|CAH57095.1| recA protein [Photobacterium phosphoreum]
          Length = 255

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/257 (69%), Positives = 218/257 (84%), Gaps = 2/257 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMKLGDNKTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            I+ +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGAV
Sbjct: 59  VISAAQKQGKTCAFIDAEHALDPIYAQKLGVDINELLVSQPDTGEQALEIVDALARSGAV 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELI 283
           E  I+YG+G +  GELI
Sbjct: 239 ETQILYGQGFNRNGELI 255


>gi|58415564|emb|CAH57196.1| recA protein [Vibrio metschnikovii]
          Length = 265

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/267 (66%), Positives = 224/267 (83%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMLLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAS 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGV + +LL+SQPDTGEQALEI D L RSGAVD+IV
Sbjct: 59  AQREGKTCAFIDAEHALDPIYAQKLGVKINDLLVSQPDTGEQALEICDALARSGAVDVIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYG+G +  GEL+DLGVK  +++KSGA
Sbjct: 239 MYGQGFNREGELVDLGVKHKLIEKSGA 265


>gi|289623220|emb|CAX51147.1| recA protein [Aeromonas jandaei]
 gi|289623224|emb|CAX51149.1| recA protein [Aeromonas enteropelogenes]
          Length = 239

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/238 (75%), Positives = 207/238 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L  IA++QK G TCAFVDAE
Sbjct: 2   IEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE
Sbjct: 62  HALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNALK
Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           FY+SVRLDIRR G+IK+ D + GN+TRVKVVKNK+A PFKQ EF I YG GIS  GEL
Sbjct: 182 FYASVRLDIRRTGAIKEGDEVVGNETRVKVVKNKVAPPFKQAEFQIFYGAGISKEGEL 239


>gi|6694854|gb|AAF25439.1|AF214792_1 RecA protein [Arthrobacter nicotianae]
          Length = 258

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/256 (70%), Positives = 214/256 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IEV+ +GS+ LD ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +QK GG  AF+DAE
Sbjct: 3   IEVIPTGSVALDAALGIGGLPRGRVVEIYGPESSGKTTVALHAVASAQKAGGVAAFIDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA+KLGVD   LL+SQPDTGEQALEI DMLV SGA+DIIVIDSVAAL PRAEIE
Sbjct: 63  HALDPEYAKKLGVDTDALLVSQPDTGEQALEIMDMLVGSGALDIIVIDSVAALVPRAEIE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRK+T  +S SK   +FINQ+R KIGV FGSPETTTGG ALK
Sbjct: 123 GEMGDSHVGLQARLMSQALRKITGRLSASKTTAIFINQLREKIGVFFGSPETTTGGKALK 182

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVR+DIRR+ ++K+  +  GN+TR K+VKNKMA PFKQ EFDI+YG GIS  G LID
Sbjct: 183 FYASVRIDIRRIETLKEGTNAVGNRTRCKIVKNKMAPPFKQAEFDILYGHGISKEGSLID 242

Query: 285 LGVKASIVDKSGAWFS 300
           +GV+ ++V KSGAWF+
Sbjct: 243 MGVEHNLVKKSGAWFT 258


>gi|52630779|gb|AAU84857.1| RecA [Pandoraea pnomenusa]
          Length = 240

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 176/239 (73%), Positives = 210/239 (87%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           +V S+GSLGLDIALG+GG P+GR++EIYGPESSGKTTL L  +A+ QK GGTCAF+DAEH
Sbjct: 2   QVASTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEH 61

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA KLGV +  LLISQPDTGEQALEI D LVRSG++D+I+IDSVAAL P+AEIEG
Sbjct: 62  ALDVGYASKLGVSVPELLISQPDTGEQALEIADALVRSGSIDLIIIDSVAALVPKAEIEG 121

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +MG+SLPG+QARLMSQALRKLT +I R+ C ++FINQ+RMKIGVMFG+PETTTGGNALKF
Sbjct: 122 EMGDSLPGLQARLMSQALRKLTGTIKRTNCTVIFINQIRMKIGVMFGNPETTTGGNALKF 181

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           YSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YG+GIS  GE+ID
Sbjct: 182 YSSVRLDIRRIGSIKKGDEVVGNETRVKVVKNKVSPPFREAIFDILYGQGISREGEIID 240


>gi|269784250|emb|CBH50770.1| recA protein [Vibrio sp. Rd 16.13]
          Length = 257

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/251 (70%), Positives = 215/251 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +QK G TCAFVDAE
Sbjct: 7   VETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAE 66

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA+KLGVD+  LL+SQPDTGE ALEI D L RSGA+D++VIDSVAALTP+AEIE
Sbjct: 67  HALDPIYAQKLGVDIDALLVSQPDTGEPALEICDALARSGAIDVLVIDSVAALTPKAEIE 126

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 127 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALK 186

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GELID
Sbjct: 187 FYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELID 246

Query: 285 LGVKASIVDKS 295
           LGVK  +V+K+
Sbjct: 247 LGVKNKLVEKA 257


>gi|261414355|gb|ACX83586.1| RecA [Aeromonas taiwanensis]
          Length = 239

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/238 (75%), Positives = 207/238 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L  IA++QK G TCAFVDAE
Sbjct: 2   IEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE
Sbjct: 62  HALDPVYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNALK
Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           FY+SVRLDIRR G+IK+ D + GN+TRVKVVKNK+A PFKQ EF I YG GIS  GEL
Sbjct: 182 FYASVRLDIRRTGAIKEGDEVVGNETRVKVVKNKVAPPFKQAEFQIFYGAGISKEGEL 239


>gi|54792473|emb|CAE45616.1| recombination-repair protein [Vibrio pomeroyi]
 gi|54792477|emb|CAE45618.1| recombination-repair protein [Vibrio lentus]
 gi|54792479|emb|CAE45619.1| recombination-repair protein [Vibrio lentus]
 gi|58415536|emb|CAH57182.1| recA protein [Vibrio lentus]
 gi|58415624|emb|CAH57226.1| recA protein [Vibrio pomeroyi]
          Length = 256

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/258 (69%), Positives = 219/258 (84%), Gaps = 2/258 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELID 284
           E  I+YG+G +  GELID
Sbjct: 239 ETQILYGKGFNREGELID 256


>gi|322412850|gb|EFY03758.1| recombinase A [Streptococcus dysgalactiae subsp. dysgalactiae ATCC
           27957]
          Length = 339

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/308 (59%), Positives = 240/308 (77%), Gaps = 6/308 (1%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+Q
Sbjct: 1   MRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG  AF+DAEHALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+D
Sbjct: 59  KEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVD 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG
Sbjct: 119 SVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEF 268
           +PETT GG ALKFY+SVRLD+R    IK     KDS  G +T++KVVKNK+A PFK  E 
Sbjct: 179 NPETTPGGRALKFYASVRLDVRGTTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEV 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++GQG EN+K +L ++ E+ + I+
Sbjct: 239 EIMYGEGISRTGELLKIASDLDIIQKAGAWFSYNGEKIGQGSENAKRYLADHPELFDEID 298

Query: 329 SLLRQNAG 336
             +R   G
Sbjct: 299 RKVRVKFG 306


>gi|15594476|ref|NP_212265.1| recombinase A [Borrelia burgdorferi B31]
 gi|218249168|ref|YP_002374659.1| protein RecA [Borrelia burgdorferi ZS7]
 gi|223889088|ref|ZP_03623677.1| protein RecA [Borrelia burgdorferi 64b]
 gi|225549262|ref|ZP_03770235.1| protein RecA [Borrelia burgdorferi 94a]
 gi|226321958|ref|ZP_03797483.1| protein RecA [Borrelia burgdorferi Bol26]
 gi|2500084|sp|Q59180|RECA_BORBU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226737752|sp|B7J164|RECA_BORBZ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|1276443|gb|AAA97557.1| RecA [Borrelia burgdorferi]
 gi|2688005|gb|AAC66507.1| recA protein (recA) [Borrelia burgdorferi B31]
 gi|218164356|gb|ACK74417.1| protein RecA [Borrelia burgdorferi ZS7]
 gi|223885337|gb|EEF56438.1| protein RecA [Borrelia burgdorferi 64b]
 gi|225370120|gb|EEG99560.1| protein RecA [Borrelia burgdorferi 94a]
 gi|226232548|gb|EEH31302.1| protein RecA [Borrelia burgdorferi Bol26]
 gi|1586537|prf||2204236A recA gene
          Length = 365

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/325 (54%), Positives = 255/325 (78%), Gaps = 4/325 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K +A+E A  QI++ +GKG+++++G +  + +GI+ +SSGS+ LD ALGIGG+P+GRI+E
Sbjct: 20  KEEAIELARVQIEKAFGKGSLIKMG-ESPVGQGIKSMSSGSIVLDEALGIGGYPRGRIIE 78

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+ LGV++  L +SQPDTGE
Sbjct: 79  IFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQPDTGE 138

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI + L+RSG VD+IV+DSVAALTP+ EI+G+MG+S  G+QARLMS+ALRK+T  +S
Sbjct: 139 QALEIAEHLIRSGGVDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKITGILS 198

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKDSITGN 248
           +S   ++FINQ+RM+IGVMFG+PETTTGGNALKFYSS+RL++R++  +      D + GN
Sbjct: 199 KSNTCIMFINQIRMRIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTRSGSSDDVIGN 258

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + RVK+VKNK+A PF++VE  I +G+GIS    ++D  +K +++ K+G+W+S    +LGQ
Sbjct: 259 KIRVKIVKNKVAPPFRKVELIIYFGKGISREAGILDAAIKHNLIQKTGSWYSLGDNKLGQ 318

Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333
           GRE+   +L + +E+A N++  LR+
Sbjct: 319 GRESVIEYLSKEVELANNLDKRLRK 343


>gi|54792154|emb|CAE54393.1| recombination-repair protein [Photobacterium angustum]
 gi|58415339|emb|CAH57084.1| recA protein [Photobacterium angustum]
          Length = 255

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/257 (69%), Positives = 219/257 (85%), Gaps = 2/257 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGAV
Sbjct: 59  TIAAAQRKGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEICDALARSGAV 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELI 283
           E  I+YG+G +  GELI
Sbjct: 239 ETQILYGQGFNRNGELI 255


>gi|312147754|gb|ADQ30413.1| protein RecA [Borrelia burgdorferi JD1]
          Length = 365

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/325 (54%), Positives = 255/325 (78%), Gaps = 4/325 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K +A+E A  QI++ +GKG+++++G +  + +GI+ +SSGS+ LD ALGIGG+P+GRI+E
Sbjct: 20  KEEAIELARVQIEKAFGKGSLIKMG-ESPVGQGIKSMSSGSIVLDEALGIGGYPRGRIIE 78

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+ LGV++  L +SQPDTGE
Sbjct: 79  IFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQPDTGE 138

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI + L+RSG VD+IV+DSVAALTP+ EI+G+MG+S  G+QARLMS+ALRK+T  +S
Sbjct: 139 QALEIAEHLIRSGGVDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKITGILS 198

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKDSITGN 248
           +S   ++FINQ+RM+IGVMFG+PETTTGGNALKFYSS+RL++R++  +      D + GN
Sbjct: 199 KSNTCIMFINQIRMRIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTRSGSSDDVIGN 258

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + RVK+VKNK+A PF++VE  I +G+GIS    ++D  +K +++ K+G+W+S    +LGQ
Sbjct: 259 KIRVKIVKNKVAPPFRKVELIIYFGKGISREAGILDAAIKHNLIQKTGSWYSLGDNKLGQ 318

Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333
           GRE+   +L + +E+A N++  LR+
Sbjct: 319 GRESVIEYLSKEVELANNLDKKLRK 343


>gi|60679097|gb|AAX33838.1| RecA [Aeromonas molluscorum]
 gi|289623232|emb|CAX51153.1| recA protein [Aeromonas molluscorum]
          Length = 239

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/238 (75%), Positives = 208/238 (87%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSL LD+ALGIGG P GR+VEIYGPESSGKTTL L  IA++QK G TCAFVDAE
Sbjct: 2   IEAISTGSLSLDVALGIGGLPCGRVVEIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE
Sbjct: 62  HALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNALK
Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           FY+SVRLDIRR+G+IK+ D + GN+TRVKVVKNK+A PFKQ EF I YG GIS  GEL
Sbjct: 182 FYASVRLDIRRIGAIKEGDEVVGNETRVKVVKNKVAPPFKQAEFQIFYGVGISKEGEL 239


>gi|110597837|ref|ZP_01386120.1| recA protein [Chlorobium ferrooxidans DSM 13031]
 gi|110340562|gb|EAT59045.1| recA protein [Chlorobium ferrooxidans DSM 13031]
          Length = 353

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/338 (60%), Positives = 265/338 (78%), Gaps = 7/338 (2%)

Query: 9   IVD--KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           +VD  K K L  A+  +++ +GKGAIM+LG   ++ + +  +S+GS+ LD ALG+GG P+
Sbjct: 13  VVDPAKLKQLNLAVDALEKQFGKGAIMRLGDSSAVMQ-VLSISTGSMTLDFALGVGGLPR 71

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+ EIYGPESSGKTTLALH IA++QK GG  A VDAEHA D  YAR+LGVD+ ++LISQ
Sbjct: 72  GRVTEIYGPESSGKTTLALHVIAEAQKEGGIAALVDAEHAFDPSYARRLGVDINSMLISQ 131

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P++GEQAL I + LVRSGAVD++V+DSVAAL P+AE+EG+MG+S+ G+QARLMSQALRKL
Sbjct: 132 PESGEQALSIVETLVRSGAVDVVVVDSVAALVPQAELEGEMGDSVVGLQARLMSQALRKL 191

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T +IS+S C+ +FINQ+R KIGVM+GSPETTTGG ALKFYSS+RLDIRR+  +KD D I 
Sbjct: 192 TGAISKSSCVCIFINQLRDKIGVMYGSPETTTGGKALKFYSSIRLDIRRIAQLKDGDEII 251

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+T+VKVVKNK+A PF+  EFDI+YGEGIS  GELIDL V+  +V KSG+WFS+   +L
Sbjct: 252 GNRTKVKVVKNKVAPPFRTAEFDILYGEGISVIGELIDLAVEFGVVKKSGSWFSYGPDKL 311

Query: 307 GQGRENSKIFLRENI----EIAENIESLLRQNAGLVAD 340
           GQGRE  K  LRE+     +I   ++ L++  A +V D
Sbjct: 312 GQGRETVKKALREDPVLFKKIHAQVKELMKVPAEIVKD 349


>gi|57233617|ref|YP_182301.1| hypothetical protein DET1606 [Dehalococcoides ethenogenes 195]
 gi|57224065|gb|AAW39122.1| RecA [Dehalococcoides ethenogenes 195]
          Length = 337

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/325 (57%), Positives = 245/325 (75%), Gaps = 1/325 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALE  +  I++ +GKG+IM+L S  +  + +E + + SL LDIALG+GG P+GRI 
Sbjct: 4   EKDKALELTVGIIEKRFGKGSIMKL-SDPTFRQTVEFIPTSSLALDIALGVGGIPRGRIS 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPE SGKTTLA H IAQ+QK G   A++D EHALD  YA   GV+L  LLISQPDTG
Sbjct: 63  EIFGPEGSGKTTLAQHIIAQAQKMGEKAAYIDVEHALDPKYASTCGVNLDELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+AL I + LVRS A+ +IVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT+SI
Sbjct: 123 EEALGIAEELVRSTAIGVIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTASI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +++  ++FINQ+R K+GVMFG+PE T GG ALKFYSSVR+D+RR+ +IK      G + 
Sbjct: 183 GQTRTAVIFINQLREKVGVMFGNPEVTPGGRALKFYSSVRIDLRRIETIKQGTVAIGTRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R KVVKNK+A PF+  EFDIM+  GIS  G LIDLGV + ++ K+GA+FS+   RLGQGR
Sbjct: 243 RAKVVKNKVAPPFRTAEFDIMFDSGISREGNLIDLGVTSEVIRKAGAFFSYGDIRLGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
           E++K +L  N ++A+ IE  +R +A
Sbjct: 303 ESAKNYLAANPDLAQEIEEKIRASA 327


>gi|54792176|emb|CAE54404.1| recombination-repair protein [Vibrio fortis]
 gi|58415473|emb|CAH57151.1| recA protein [Vibrio fortis]
          Length = 258

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/258 (69%), Positives = 219/258 (84%), Gaps = 2/258 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 3   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 60

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 61  LIAAAQREGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 120

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 121 DVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 180

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ 
Sbjct: 181 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQA 240

Query: 267 EFDIMYGEGISFFGELID 284
           E  I+YG+G +  GELID
Sbjct: 241 ETQILYGQGFNREGELID 258


>gi|3425923|emb|CAA11612.1| recA [Neisseria elongata subsp. elongata]
 gi|3425925|emb|CAA11613.1| recA [Neisseria elongata]
          Length = 237

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/237 (74%), Positives = 208/237 (87%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKTTL L TIAQ QK GG CAF+DAE+A D
Sbjct: 1   STGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLETIAQCQKNGGVCAFIDAENAFD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYARKLGV ++ L++SQPDTGEQALEI DMLVRSG VD++VIDSVAAL P+AEIEGDMG
Sbjct: 61  PIYARKLGVKVEELMVSQPDTGEQALEICDMLVRSGGVDMVVIDSVAALVPKAEIEGDMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRKLT  I ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+S
Sbjct: 121 DSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           VRLDIRR G IK  D + GN+T+VKV+KNK+A PF+Q EFDI+YGEG+S+ GELIDL
Sbjct: 181 VRLDIRRTGQIKKGDDVIGNETKVKVIKNKVAPPFRQAEFDILYGEGVSWEGELIDL 237


>gi|309803080|ref|ZP_07697179.1| RecA protein [Lactobacillus iners LactinV 11V1-d]
 gi|308164861|gb|EFO67109.1| RecA protein [Lactobacillus iners LactinV 11V1-d]
          Length = 345

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/327 (56%), Positives = 255/327 (77%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K  ALE AL +I++ +GKGA+M++G +  +   I  +S+GS+ LD ALG+GG+P+GRI+
Sbjct: 5   EKKAALELALKKIEKNFGKGAVMRMGEK--VDTKISTISTGSIALDTALGVGGYPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQP+TG
Sbjct: 63  EVYGPESSGKTTVALHAVAEVQKNGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 123 EEGLQIADTLISSGAIDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGNI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++R+   IK      G++ 
Sbjct: 183 SKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRKSEQIKQGSDPIGSRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK    DIMYG GIS  GEL+D+ V+  IV+KSGAW+S+   R+GQGR
Sbjct: 243 KIKVVKNKVAPPFKVATVDIMYGIGISKSGELLDMAVEKDIVNKSGAWYSYGDDRIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K +L E+ +I   I   +RQ  G+
Sbjct: 303 ENAKQYLEEHPDIFREINDKVRQAYGI 329


>gi|261414357|gb|ACX83587.1| RecA [Aeromonas sanarellii]
          Length = 239

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/238 (75%), Positives = 207/238 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L  IA++Q+ G TCAFVDAE
Sbjct: 2   IEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQRKGKTCAFVDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE
Sbjct: 62  HALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNALK
Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           FY+SVRLDIRR G+IK+ D + GN+TRVKVVKNK+A PFKQ EF I YG GIS  GEL
Sbjct: 182 FYASVRLDIRRTGAIKEGDEVVGNETRVKVVKNKVAPPFKQAEFQIFYGAGISKEGEL 239


>gi|289623222|emb|CAX51148.1| recA protein [Aeromonas caviae]
          Length = 239

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/238 (75%), Positives = 206/238 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L  IA++Q  G TCAFVDAE
Sbjct: 2   IEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQNNGKTCAFVDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE
Sbjct: 62  HALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNALK
Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           FY+SVRLDIRR G+IK+ D + GN+TRVKVVKNK+A PFKQ EF I YG GIS  GEL
Sbjct: 182 FYASVRLDIRRTGAIKEGDEVVGNETRVKVVKNKVAPPFKQAEFQIFYGAGISKEGEL 239


>gi|169248060|gb|ACA51813.1| RecA [Aliivibrio logei]
 gi|169248062|gb|ACA51814.1| RecA [Aliivibrio logei]
 gi|169248066|gb|ACA51816.1| RecA [Aliivibrio logei]
 gi|169248068|gb|ACA51817.1| RecA [Aliivibrio logei]
 gi|169248074|gb|ACA51820.1| RecA [Aliivibrio logei]
          Length = 244

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/244 (72%), Positives = 210/244 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IAQ+QK G TCAF+DAEHALD
Sbjct: 1   STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEAIAQAQKAGKTCAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYA+KLGVD+  LL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG
Sbjct: 61  PIYAQKLGVDIDQLLCSQPDTGEQALEIVDALARSGAVDVIVVDSVAALTPKAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+S
Sbjct: 121 DSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           VRLDIRR G++KD D + GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK
Sbjct: 181 VRLDIRRTGAVKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVK 240

Query: 289 ASIV 292
             +V
Sbjct: 241 HKLV 244


>gi|195942371|ref|ZP_03087753.1| recombinase A [Borrelia burgdorferi 80a]
 gi|312149338|gb|ADQ29409.1| protein RecA [Borrelia burgdorferi N40]
          Length = 365

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/325 (54%), Positives = 255/325 (78%), Gaps = 4/325 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K +A+E A  QI++ +GKG+++++G +  + +GI+ +SSGS+ LD ALGIGG+P+GRI+E
Sbjct: 20  KEEAIELARVQIEKAFGKGSLIKMG-ESPVGQGIKSMSSGSIVLDEALGIGGYPRGRIIE 78

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+ LGV++  L +SQPDTGE
Sbjct: 79  IFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQPDTGE 138

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI + L+RSG VD+IV+DSVAALTP+ EI+G+MG+S  G+QARLMS+ALRK+T  +S
Sbjct: 139 QALEIAEHLIRSGGVDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKITGILS 198

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKDSITGN 248
           +S   ++FINQ+RM+IGVMFG+PETTTGGNALKFYSS+RL++R++  +      D + GN
Sbjct: 199 KSNTCIMFINQIRMRIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTSSGSSDDVIGN 258

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + RVK+VKNK+A PF++VE  I +G+GIS    ++D  +K +++ K+G+W+S    +LGQ
Sbjct: 259 KIRVKIVKNKVAPPFRKVELIIYFGKGISREAGILDAAIKHNLIQKTGSWYSLGDNKLGQ 318

Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333
           GRE+   +L + +E+A N++  LR+
Sbjct: 319 GRESVIEYLSKEVELANNLDKRLRK 343


>gi|224532802|ref|ZP_03673418.1| protein RecA [Borrelia burgdorferi WI91-23]
 gi|224512290|gb|EEF82675.1| protein RecA [Borrelia burgdorferi WI91-23]
          Length = 365

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/325 (54%), Positives = 255/325 (78%), Gaps = 4/325 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K +A+E A  QI++ +GKG+++++G +  + +GI+ +SSGS+ LD ALGIGG+P+GRI+E
Sbjct: 20  KEEAIELARVQIEKAFGKGSLIKMG-ESPVGQGIKSMSSGSIILDEALGIGGYPRGRIIE 78

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+ LGV++  L +SQPDTGE
Sbjct: 79  IFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQPDTGE 138

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI + L+RSG VD+IV+DSVAALTP+ EI+G+MG+S  G+QARLMS+ALRK+T  +S
Sbjct: 139 QALEIAEYLIRSGGVDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKITGILS 198

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKDSITGN 248
           +S   ++FINQ+RM+IGVMFG+PETTTGGNALKFYSS+RL++R++  +      D + GN
Sbjct: 199 KSNTCIMFINQIRMRIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTRSGSSDDVIGN 258

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + RVK+VKNK+A PF++VE  I +G+GIS    ++D  +K +++ K+G+W+S    +LGQ
Sbjct: 259 KIRVKIVKNKVAPPFRKVELIIYFGKGISREAGILDAAIKHNLIQKTGSWYSLGDNKLGQ 318

Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333
           GRE+   +L + +E+A N++  LR+
Sbjct: 319 GRESVIEYLSKEVELANNLDKRLRK 343


>gi|54792174|emb|CAE54403.1| recombination-repair protein [Listonella pelagia]
 gi|58415620|emb|CAH57224.1| recA protein [Listonella pelagia]
          Length = 256

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/258 (69%), Positives = 219/258 (84%), Gaps = 2/258 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQREGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELID 284
           E  I+YG+G +  GELID
Sbjct: 239 ETQILYGQGFNREGELID 256


>gi|304564419|gb|ADM45073.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 265

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/267 (67%), Positives = 225/267 (84%), Gaps = 2/267 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++
Sbjct: 1   IMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVI
Sbjct: 59  QKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVI 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMF
Sbjct: 119 DSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETT GG ALKFY+++RLD+R+V +IK  + I G++TRVKVVKNK+A PFKQ EFDIM
Sbjct: 179 GNPETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIM 238

Query: 272 YGEGISFFGELIDLGVKASIVDKSGAW 298
           YGEGIS  G ++D+G    I++KSGAW
Sbjct: 239 YGEGISREGSILDIGASIDIIEKSGAW 265


>gi|179184919|gb|ACB78164.1| RecA [Aliivibrio finisterrensis]
          Length = 262

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/264 (67%), Positives = 221/264 (83%), Gaps = 2/264 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA 
Sbjct: 1   SIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD++V
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+ VVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVIGNETRIXVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDK 294
           +YG G +  GELIDLGVK  +VDK
Sbjct: 239 LYGXGFNREGELIDLGVKHKLVDK 262


>gi|259501046|ref|ZP_05743948.1| recombination protein A [Lactobacillus iners DSM 13335]
 gi|302190505|ref|ZP_07266759.1| recombinase A [Lactobacillus iners AB-1]
 gi|309804581|ref|ZP_07698646.1| RecA protein [Lactobacillus iners LactinV 09V1-c]
 gi|309806995|ref|ZP_07700977.1| RecA protein [Lactobacillus iners LactinV 03V1-b]
 gi|309810010|ref|ZP_07703857.1| RecA protein [Lactobacillus iners SPIN 2503V10-D]
 gi|312870696|ref|ZP_07730804.1| RecA protein [Lactobacillus iners LEAF 3008A-a]
 gi|312872582|ref|ZP_07732650.1| RecA protein [Lactobacillus iners LEAF 2062A-h1]
 gi|312874360|ref|ZP_07734391.1| RecA protein [Lactobacillus iners LEAF 2052A-d]
 gi|312874818|ref|ZP_07734837.1| RecA protein [Lactobacillus iners LEAF 2053A-b]
 gi|315653894|ref|ZP_07906810.1| recombination protein A [Lactobacillus iners ATCC 55195]
 gi|325911397|ref|ZP_08173809.1| RecA protein [Lactobacillus iners UPII 143-D]
 gi|325913184|ref|ZP_08175554.1| RecA protein [Lactobacillus iners UPII 60-B]
 gi|329920431|ref|ZP_08277163.1| protein RecA [Lactobacillus iners SPIN 1401G]
 gi|259167740|gb|EEW52235.1| recombination protein A [Lactobacillus iners DSM 13335]
 gi|308165973|gb|EFO68191.1| RecA protein [Lactobacillus iners LactinV 09V1-c]
 gi|308166615|gb|EFO68812.1| RecA protein [Lactobacillus iners LactinV 03V1-b]
 gi|308169650|gb|EFO71696.1| RecA protein [Lactobacillus iners SPIN 2503V10-D]
 gi|311089563|gb|EFQ47988.1| RecA protein [Lactobacillus iners LEAF 2053A-b]
 gi|311090126|gb|EFQ48539.1| RecA protein [Lactobacillus iners LEAF 2052A-d]
 gi|311091944|gb|EFQ50320.1| RecA protein [Lactobacillus iners LEAF 2062A-h1]
 gi|311093807|gb|EFQ52143.1| RecA protein [Lactobacillus iners LEAF 3008A-a]
 gi|315488590|gb|EFU78236.1| recombination protein A [Lactobacillus iners ATCC 55195]
 gi|325476747|gb|EGC79901.1| RecA protein [Lactobacillus iners UPII 143-D]
 gi|325477605|gb|EGC80747.1| RecA protein [Lactobacillus iners UPII 60-B]
 gi|328936107|gb|EGG32560.1| protein RecA [Lactobacillus iners SPIN 1401G]
          Length = 345

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/327 (56%), Positives = 254/327 (77%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K  ALE AL +I++ +GKGA+M++G +  +   I  +S+GS+ LD ALG+GG+P+GRI+
Sbjct: 5   EKKAALELALKKIEKNFGKGAVMRMGEK--VDTKISTISTGSIALDTALGVGGYPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQP+TG
Sbjct: 63  EVYGPESSGKTTVALHAVAEVQKNGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 123 EEGLQIADTLISSGAIDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGNI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++R+   IK      G++ 
Sbjct: 183 SKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRKSEQIKQGSDPIGSRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK    DIMYG GIS  GEL+D+ V   IV+KSGAW+S+   R+GQGR
Sbjct: 243 KIKVVKNKVAPPFKVATVDIMYGIGISKSGELLDMAVDKDIVNKSGAWYSYGDDRIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K +L E+ +I   I   +RQ  G+
Sbjct: 303 ENAKQYLEEHPDIFREINDKVRQAYGI 329


>gi|169248076|gb|ACA51821.1| RecA [Aliivibrio logei]
 gi|169248078|gb|ACA51822.1| RecA [Aliivibrio logei]
 gi|169248080|gb|ACA51823.1| RecA [Aliivibrio logei]
          Length = 244

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 176/244 (72%), Positives = 210/244 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IAQ+QK G TCAF+DAEHALD
Sbjct: 1   STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEAIAQAQKAGKTCAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YA+KLGVD+  LL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG
Sbjct: 61  PVYAQKLGVDIDQLLCSQPDTGEQALEIVDALARSGAVDVIVVDSVAALTPKAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+S
Sbjct: 121 DSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           VRLDIRR G++KD D + GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK
Sbjct: 181 VRLDIRRTGAVKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVK 240

Query: 289 ASIV 292
             +V
Sbjct: 241 HKLV 244


>gi|54792485|emb|CAE45622.1| recombination-repair protein [Vibrio tubiashii]
 gi|54792487|emb|CAE45623.1| recombination-repair protein [Vibrio brasiliensis]
 gi|54792515|emb|CAE45637.1| recombination-repair protein [Vibrio cholerae]
 gi|58415383|emb|CAH57106.1| recA protein [Vibrio brasiliensis LMG 20546]
          Length = 256

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/258 (68%), Positives = 218/258 (84%), Gaps = 2/258 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  CIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELID 284
           E  I+YG G +  GELID
Sbjct: 239 ETQILYGAGFNREGELID 256


>gi|290795121|gb|ADD64576.1| RecA recombinase [Vibrio ordalii]
          Length = 257

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/259 (68%), Positives = 220/259 (84%), Gaps = 2/259 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSGA+D
Sbjct: 59  IAAAQRVGKTCAFIDAEHALDPIYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAID 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VIVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ +
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAD 238

Query: 268 FDIMYGEGISFFGELIDLG 286
             I+YG+G +  GEL+DLG
Sbjct: 239 TQILYGQGFNREGELVDLG 257


>gi|195942363|ref|ZP_03087745.1| recombinase A [Borrelia burgdorferi 80a]
          Length = 365

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/325 (54%), Positives = 254/325 (78%), Gaps = 4/325 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K +A+E A  QI++ +GKG+++++G +  + +GI+ +SSGS+ LD ALGIGG+P+GRI+E
Sbjct: 20  KEEAIELARVQIEKAFGKGSLIKMG-ESPVGQGIKSMSSGSIVLDEALGIGGYPRGRIIE 78

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+ LGV++  L +SQPDTGE
Sbjct: 79  IFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQPDTGE 138

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI + L+RSG VD+IV+DSVAALTP+ EI+G+MG+S  G+QARLMS+ALRK+T  +S
Sbjct: 139 QALEIAEHLIRSGGVDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKITGILS 198

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKDSITGN 248
           +S   ++FINQ+RM+IGVMFG+PETTTGGNALKFYSS+RL++R++  +      D + GN
Sbjct: 199 KSNTCIMFINQIRMRIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTRSGSSDDVIGN 258

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + RVK+VKNK+A PF++VE  I +G+GIS    ++D  +K +++ K+G+W+S    +LGQ
Sbjct: 259 KIRVKIVKNKVAPPFRKVELIIYFGKGISREAGILDAAIKHNLIQKTGSWYSLGDNKLGQ 318

Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333
           GRE    +L + +E+A N++  LR+
Sbjct: 319 GREGVIEYLSKEVELANNLDKKLRK 343


>gi|223936230|ref|ZP_03628143.1| recA protein [bacterium Ellin514]
 gi|223895092|gb|EEF61540.1| recA protein [bacterium Ellin514]
          Length = 389

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 191/338 (56%), Positives = 257/338 (76%), Gaps = 3/338 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + + LEAALS I + YG+G+IM+LG + +  + IEV+ +G+LGLD+ALG+GG P+GR+VE
Sbjct: 50  RQRDLEAALSTIIKSYGEGSIMRLG-EANAHQAIEVIPTGALGLDLALGVGGLPRGRVVE 108

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA +QK GG  AF+DAEHALD  YA+KLGV+L +LL+SQPD GE
Sbjct: 109 IYGPESSGKTTLMLHVIANAQKMGGLAAFIDAEHALDPGYAKKLGVNLDDLLVSQPDCGE 168

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           +AL I + L RS A+D+IVIDSVAAL P+AE+EG+MG +  GMQARLMSQ LRKLT+ ++
Sbjct: 169 EALTICETLARSNALDVIVIDSVAALVPKAELEGEMGMATMGMQARLMSQGLRKLTAILN 228

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSITGNQT 250
           +SK   VF NQ+R K+GVMFG+PETT GG ALKFY+SVRLDIRR  ++KD   +  GN  
Sbjct: 229 KSKTTCVFTNQLREKVGVMFGNPETTPGGKALKFYASVRLDIRRKDTLKDAAGNAIGNHV 288

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF + EFDI+Y  GI+  G ++D+G++  +VDK GAW  F G  +GQG+
Sbjct: 289 KVKVVKNKVAPPFSETEFDIIYNHGINKEGSILDVGIENGVVDKKGAWLQFAGDLIGQGK 348

Query: 311 ENSKIFLRENIEIAENI-ESLLRQNAGLVADSLLQEPA 347
           E ++  L E  E+A+ I E+++ + +G+  ++   E A
Sbjct: 349 EAAQRALAEKPELAKKIVEAIMAKRSGVTTEAAKPEVA 386


>gi|149200632|ref|ZP_01877635.1| recombinase A [Lentisphaera araneosa HTCC2155]
 gi|149136281|gb|EDM24731.1| recombinase A [Lentisphaera araneosa HTCC2155]
          Length = 347

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 171/312 (54%), Positives = 242/312 (77%), Gaps = 3/312 (0%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           +K+    D+ + L  A+SQI + +G GAIM+LG +      + V+S+G+L LD+ALG+ G
Sbjct: 3   KKDTEKTDRDRNLNLAISQINKEFGNGAIMKLGDKP--HSDVSVISTGALSLDMALGVYG 60

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P+GR+VEIYGPESSGKT++ LH +A +QK+GGTCAF+D EHALD  YAR +GV+ ++LL
Sbjct: 61  MPRGRVVEIYGPESSGKTSVCLHVVANAQKSGGTCAFIDTEHALDPQYARMIGVNTQDLL 120

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPD GE AL I   L+ S ++D++VIDSVAALTPRAE++G +G+S  G+QARLMS AL
Sbjct: 121 VSQPDCGEDALNIAQTLISSNSIDVLVIDSVAALTPRAELDGQIGDSHVGLQARLMSSAL 180

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK- 242
           R LT SI++++  L+F NQ+R KIGVM+G+PE T GG ALKFY+S+R++IRR  +I++  
Sbjct: 181 RSLTGSINKTRTCLIFTNQLREKIGVMYGNPEVTPGGKALKFYASIRMEIRRAAAIQNPA 240

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
             + GN+ +VK+VKNK+A PF++ EFDIMY EGIS  G ++D+ V+  I++K G+WFSF+
Sbjct: 241 GDVLGNRVKVKIVKNKIAPPFRKAEFDIMYNEGISRAGSILDVAVELDIINKKGSWFSFE 300

Query: 303 GQRLGQGRENSK 314
           G++LGQGRE +K
Sbjct: 301 GRQLGQGREQAK 312


>gi|54792180|emb|CAE54406.1| recombination-repair protein [Vibrio cyclitrophicus]
 gi|58415443|emb|CAH57136.1| recA protein [Vibrio cyclitrophicus]
          Length = 255

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/257 (69%), Positives = 218/257 (84%), Gaps = 2/257 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D
Sbjct: 59  IAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAID 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAE 238

Query: 268 FDIMYGEGISFFGELID 284
             I+YG+G +  GELID
Sbjct: 239 TQILYGKGFNREGELID 255


>gi|169248064|gb|ACA51815.1| RecA [Aliivibrio salmonicida]
          Length = 244

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/244 (72%), Positives = 210/244 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IAQ+QK G TCAF+DAEHALD
Sbjct: 1   STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAQAQKAGKTCAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYA+KLGVD+  LL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG
Sbjct: 61  PIYAQKLGVDIDQLLCSQPDTGEQALEIVDALARSGAVDLIVVDSVAALTPKAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+S
Sbjct: 121 DSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           VRLDIRR G++KD D + GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK
Sbjct: 181 VRLDIRRTGAVKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVK 240

Query: 289 ASIV 292
             +V
Sbjct: 241 HKLV 244


>gi|304564611|gb|ADM45169.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 265

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/267 (66%), Positives = 225/267 (84%), Gaps = 2/267 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++
Sbjct: 1   IMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVI
Sbjct: 59  QKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVI 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMF
Sbjct: 119 DSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIM
Sbjct: 179 GNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIM 238

Query: 272 YGEGISFFGELIDLGVKASIVDKSGAW 298
           YGEGIS  G ++D+G    I++KSGAW
Sbjct: 239 YGEGISREGSILDIGASIDIIEKSGAW 265


>gi|148878991|emb|CAM07011.1| RecA protein [Mycobacterium sp. MG4]
          Length = 259

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 174/258 (67%), Positives = 218/258 (84%)

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQ
Sbjct: 1   GRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKLGVDTDSLLVSQ 60

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI DMLVRSGA+ ++VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 61  PDTGEQALEIADMLVRSGAISLLVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKM 120

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T +++ S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD     
Sbjct: 121 TGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAV 180

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++L
Sbjct: 181 GNRTRVKVVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQL 240

Query: 307 GQGRENSKIFLRENIEIA 324
           GQG+EN++ FL EN+++A
Sbjct: 241 GQGKENARNFLLENVDVA 258


>gi|54792461|emb|CAE45610.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|54792465|emb|CAE45612.1| recombination-repair protein [Vibrio rotiferianus]
 gi|58415632|emb|CAH57230.1| recA protein [Vibrio rotiferianus]
          Length = 258

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 176/260 (67%), Positives = 220/260 (84%), Gaps = 2/260 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEA 238

Query: 267 EFDIMYGEGISFFGELIDLG 286
              IMYG+G +  GELIDLG
Sbjct: 239 NTQIMYGQGFNREGELIDLG 258


>gi|110264789|gb|ABG56970.1| recA protein [Photobacterium leiognathi]
 gi|110264791|gb|ABG56971.1| recA protein [Photobacterium leiognathi]
 gi|110264793|gb|ABG56972.1| recA protein [Photobacterium leiognathi]
 gi|110264799|gb|ABG56975.1| recA protein [Photobacterium leiognathi]
 gi|110264801|gb|ABG56976.1| recA protein [Photobacterium leiognathi]
 gi|110264805|gb|ABG56978.1| recA protein [Photobacterium leiognathi subsp. mandapamensis]
 gi|156067099|gb|ABR12769.2| recombinase A [Photobacterium leiognathi]
 gi|159146604|gb|ABW90746.1| recombinase A [Photobacterium leiognathi subsp. mandapamensis]
          Length = 255

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/257 (69%), Positives = 219/257 (85%), Gaps = 2/257 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L TI
Sbjct: 1   KGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLETI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQRKGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEICDALARSGAVDL 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG
Sbjct: 119 IVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ + 
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKQADT 238

Query: 269 DIMYGEGISFFGELIDL 285
            I+YG+G +  GEL+DL
Sbjct: 239 QILYGQGFNRNGELVDL 255


>gi|54792178|emb|CAE54405.1| recombination-repair protein [Vibrio chagasii]
          Length = 257

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/257 (69%), Positives = 218/257 (84%), Gaps = 2/257 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 3   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 60

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 61  LIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 120

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 121 DVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 180

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ 
Sbjct: 181 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQA 240

Query: 267 EFDIMYGEGISFFGELI 283
           E  I+YG+G +  GELI
Sbjct: 241 ETQILYGQGFNREGELI 257


>gi|3425915|emb|CAA11608.1| recA [Neisseria elongata]
 gi|3425919|emb|CAA11610.1| recA [Neisseria elongata]
          Length = 237

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 176/237 (74%), Positives = 208/237 (87%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLG+D+ALG+GG P+GRIVEI+GPESSGKTTL L TIAQ QK GG CAF+DAE+A D
Sbjct: 1   STGSLGVDLALGVGGLPRGRIVEIFGPESSGKTTLCLETIAQCQKNGGVCAFIDAENAFD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYARKLGV ++ L++SQPDTGEQALEI DMLVRSG VD++VIDSVAAL P+AEIEGDMG
Sbjct: 61  PIYARKLGVKVEELMVSQPDTGEQALEICDMLVRSGGVDMVVIDSVAALVPKAEIEGDMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRKLT  I ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+S
Sbjct: 121 DSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           VRLDIRR G IK  D + GN+T+VKV+KNK+A PF+Q EFDI+YGEG+S+ GELIDL
Sbjct: 181 VRLDIRRTGQIKKGDDVIGNETKVKVIKNKVAPPFRQAEFDILYGEGVSWEGELIDL 237


>gi|219684834|ref|ZP_03539776.1| protein RecA [Borrelia garinii PBr]
 gi|219671779|gb|EED28834.1| protein RecA [Borrelia garinii PBr]
          Length = 362

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/330 (53%), Positives = 258/330 (78%), Gaps = 4/330 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M  V+K +A+E A  QI++ +GKG+++++G +  + +GI+ +SSGS+ LD ALGIGG+P+
Sbjct: 15  MERVNKEEAIELARVQIEKTFGKGSLIKMG-ESPVGKGIKSISSGSIVLDEALGIGGYPR 73

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+ LGV++  L +SQ
Sbjct: 74  GRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVSELWLSQ 133

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI + L+RSG +D+IV+DSVAALTP+ EI+G+MG+S  G+QARLMS+ALRK+
Sbjct: 134 PDTGEQALEIAEHLIRSGGIDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKI 193

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKD 243
           T  +S+S   ++FINQ+RM+IG+MFG+PETTTGGNALKFY+S+RL++R++  I      D
Sbjct: 194 TGILSKSNTCIMFINQIRMRIGIMFGNPETTTGGNALKFYASLRLEVRKIEQITRSGSSD 253

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+ RVK+VKNK+A PF++VE  I +G+GIS    ++D  +K +++ K+G+W+S   
Sbjct: 254 DVIGNKIRVKIVKNKVAPPFRKVELVIYFGKGISREAGILDAALKYNLIQKTGSWYSLGD 313

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQ 333
            +LGQGRE+   +L + +E+A +++  LR+
Sbjct: 314 NKLGQGRESVIEYLNKEVELANDLDKRLRK 343


>gi|58415363|emb|CAH57096.1| recA protein [Photobacterium phosphoreum]
          Length = 260

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/262 (67%), Positives = 221/262 (84%), Gaps = 2/262 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA 
Sbjct: 1   SIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD++V
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVIGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIV 292
           +YG+G +  GELIDLGVK  +V
Sbjct: 239 LYGKGFNREGELIDLGVKHKLV 260


>gi|289623214|emb|CAX51144.1| recA protein [Aeromonas popoffii]
 gi|289623216|emb|CAX51145.1| recA protein [Aeromonas bestiarum]
 gi|289623218|emb|CAX51146.1| recA protein [Aeromonas salmonicida]
 gi|289623236|emb|CAX51155.1| recA protein [Aeromonas sobria]
          Length = 239

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/238 (74%), Positives = 207/238 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L  IA++QK G  CAF+DAE
Sbjct: 2   IEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKVCAFIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE
Sbjct: 62  HALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNALK
Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           FY+SVRLDIRR+G+IK+ D + GN+TRVKVVKNK+A PFKQ EF I YG GIS  GEL
Sbjct: 182 FYASVRLDIRRIGAIKEGDEVVGNETRVKVVKNKVAPPFKQAEFQIFYGVGISKEGEL 239


>gi|289623230|emb|CAX51152.1| recA protein [Aeromonas encheleia]
          Length = 239

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/238 (74%), Positives = 206/238 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L  IA++Q  G  CAF+DAE
Sbjct: 2   IEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQNKGKVCAFIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE
Sbjct: 62  HALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNALK
Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           FY+SVRLDIRR+G+IKD D + GN+TRVKVVKNK+A PFKQ EF I YG GIS  GEL
Sbjct: 182 FYASVRLDIRRIGAIKDGDEVVGNETRVKVVKNKVAPPFKQAEFQIFYGVGISKEGEL 239


>gi|269116005|gb|ACZ26522.1| RecA [Enterobacter sp. i1]
          Length = 239

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 173/239 (72%), Positives = 211/239 (88%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVD+ NLL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++
Sbjct: 61  DPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
           SVRLDIRR+G++K+ +++ G++TRVKVVKNK+A+PFKQ EF I+YGEGI+FFGEL+DLG
Sbjct: 181 SVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFFGELVDLG 239


>gi|189347607|ref|YP_001944136.1| recombinase A [Chlorobium limicola DSM 245]
 gi|238692194|sp|B3EGP4|RECA_CHLL2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|189341754|gb|ACD91157.1| recA protein [Chlorobium limicola DSM 245]
          Length = 350

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/322 (61%), Positives = 259/322 (80%), Gaps = 1/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K K L  A+  +++ +GKGAIM+LG   ++ + ++ +S+GS+ LD ALG+GG P+GR+ E
Sbjct: 19  KLKQLNLAVDALEKQFGKGAIMRLGDGSAVMQ-VQSISTGSMTLDFALGVGGLPRGRVAE 77

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH IA++QK GG  A VDAEHA D  YARKLGVD+  LLISQP++GE
Sbjct: 78  IYGPESSGKTTLALHVIAEAQKEGGIAAIVDAEHAFDPSYARKLGVDINALLISQPESGE 137

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL I + LVRSGAVD++V+DSVAAL P+AE+EG+MG+S+ G+QARLMSQALRKLT +IS
Sbjct: 138 QALTIVETLVRSGAVDVVVVDSVAALVPQAELEGEMGDSVVGLQARLMSQALRKLTGAIS 197

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S  + +FINQ+R KIGVM+GSPETTTGG ALKFY+S+RLDIR++  IKD D I GN+T+
Sbjct: 198 KSSAVCIFINQLRDKIGVMYGSPETTTGGKALKFYASIRLDIRKIAQIKDGDEIVGNRTK 257

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PFK  EFDI+YGEGIS  GEL+DL V+  +V KSG+WFSF  ++LGQGRE
Sbjct: 258 VKVVKNKVAPPFKSAEFDILYGEGISAMGELVDLAVEFGVVKKSGSWFSFGQEKLGQGRE 317

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
           ++K  LRE+  + + +   +R+
Sbjct: 318 SAKKALREDHALFQQVYIQVRE 339


>gi|197941163|gb|ACH78295.1| RecA [Aliivibrio finisterrensis]
          Length = 260

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/262 (67%), Positives = 221/262 (84%), Gaps = 2/262 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA 
Sbjct: 1   SIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD++V
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVIGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIV 292
           +YG+G +  GELIDLGVK  +V
Sbjct: 239 LYGKGFNREGELIDLGVKHKLV 260


>gi|225549852|ref|ZP_03770814.1| protein RecA [Borrelia burgdorferi 118a]
 gi|225369543|gb|EEG98994.1| protein RecA [Borrelia burgdorferi 118a]
          Length = 365

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/325 (54%), Positives = 255/325 (78%), Gaps = 4/325 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K +A+E A  QI++ +GKG+++++G +  + +GI+ +SSGS+ LD ALGIGG+P+GRI+E
Sbjct: 20  KEEAIELARVQIEKAFGKGSLIKMG-ESPVGQGIKSMSSGSIVLDEALGIGGYPRGRIIE 78

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+ LGV++  L +SQPDTGE
Sbjct: 79  IFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQPDTGE 138

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI + L+RSG VD+IV+DSVAALTP+ EI+G+MG+S  G+QARLMS+ALRK+T  +S
Sbjct: 139 QALEIAEHLIRSGGVDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKITGILS 198

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKDSITGN 248
           +S   ++FINQ+R++IGVMFG+PETTTGGNALKFYSS+RL++R++  +      D + GN
Sbjct: 199 KSNTCIMFINQIRIRIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTRSGSSDDVIGN 258

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + RVK+VKNK+A PF++VE  I +G+GIS    ++D  +K +++ K+G+W+S    +LGQ
Sbjct: 259 KIRVKIVKNKVAPPFRKVELIIYFGKGISREAGILDAAIKHNLIQKTGSWYSLGDNKLGQ 318

Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333
           GRE+   +L + +E+A N++  LR+
Sbjct: 319 GRESVIEYLSKEVELANNLDKRLRK 343


>gi|216264676|ref|ZP_03436668.1| protein RecA [Borrelia burgdorferi 156a]
 gi|221217406|ref|ZP_03588877.1| protein RecA [Borrelia burgdorferi 72a]
 gi|224533980|ref|ZP_03674564.1| protein RecA [Borrelia burgdorferi CA-11.2a]
 gi|215981149|gb|EEC21956.1| protein RecA [Borrelia burgdorferi 156a]
 gi|221192684|gb|EEE18900.1| protein RecA [Borrelia burgdorferi 72a]
 gi|224512816|gb|EEF83183.1| protein RecA [Borrelia burgdorferi CA-11.2a]
          Length = 365

 Score =  375 bits (962), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/325 (54%), Positives = 255/325 (78%), Gaps = 4/325 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K +A+E A  QI++ +GKG+++++G +  + +GI+ +SSGS+ LD ALGIGG+P+GRI+E
Sbjct: 20  KEEAIELARVQIEKAFGKGSLIKMG-ESPVGQGIKSMSSGSIVLDEALGIGGYPRGRIIE 78

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+ LGV++  L +SQPDTGE
Sbjct: 79  IFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQPDTGE 138

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI + L+RSG VD+IV+DSVAALTP+ EI+G+MG+S  G+QARLMS+ALRK+T  +S
Sbjct: 139 QALEIAEHLIRSGGVDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKITGILS 198

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKDSITGN 248
           +S   ++FINQ+R++IGVMFG+PETTTGGNALKFYSS+RL++R++  +      D + GN
Sbjct: 199 KSNTCIMFINQIRIRIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTRSGSSDDVIGN 258

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + RVK+VKNK+A PF++VE  I +G+GIS    ++D  +K +++ K+G+W+S    +LGQ
Sbjct: 259 KIRVKIVKNKVAPPFRKVELIIYFGKGISREAGILDAAIKHNLIQKTGSWYSLGDNKLGQ 318

Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333
           GRE+   +L + +E+A N++  LR+
Sbjct: 319 GRESVIEYLSKEVELANNLDKRLRK 343


>gi|54792483|emb|CAE45621.1| recombination-repair protein [Vibrio kanaloae]
          Length = 255

 Score =  375 bits (962), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/257 (69%), Positives = 218/257 (84%), Gaps = 2/257 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELI 283
           E  I+YG+G +  GELI
Sbjct: 239 ETQILYGKGFNREGELI 255


>gi|169248070|gb|ACA51818.1| RecA [Aliivibrio wodanis]
 gi|169248072|gb|ACA51819.1| RecA [Aliivibrio wodanis]
          Length = 244

 Score =  375 bits (962), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 176/244 (72%), Positives = 210/244 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IAQ+QK G TCAF+DAEHALD
Sbjct: 1   STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEAIAQAQKAGKTCAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYA+KLGVD+  LL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG
Sbjct: 61  PIYAQKLGVDIDQLLCSQPDTGEQALEIVDALARSGAVDVIVVDSVAALTPKAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+S
Sbjct: 121 DSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           VRLDIRR G++K+ D + GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK
Sbjct: 181 VRLDIRRTGAVKEGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVK 240

Query: 289 ASIV 292
             +V
Sbjct: 241 HKLV 244


>gi|54792451|emb|CAE45605.1| recombination-repair protein [Vibrio diazotrophicus]
 gi|54792453|emb|CAE45606.1| recombination-repair protein [Vibrio diazotrophicus]
 gi|58415453|emb|CAH57141.1| recA protein [Vibrio diazotrophicus]
          Length = 256

 Score =  375 bits (962), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 176/258 (68%), Positives = 219/258 (84%), Gaps = 2/258 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD IYARKLGV++  LL+SQPDTGEQALEI D L RSGAV
Sbjct: 59  LIAAAQRVGKTCAFIDAEHALDPIYARKLGVNIDELLVSQPDTGEQALEICDALARSGAV 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELID 284
           +  I+YG+G +  GELID
Sbjct: 239 DTQILYGQGFNREGELID 256


>gi|299115656|emb|CBN75857.1| recombinase A [Ectocarpus siliculosus]
          Length = 453

 Score =  375 bits (962), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/323 (54%), Positives = 246/323 (76%), Gaps = 6/323 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + +AL+  L QI+R YG+G+I+++G   S+   +E  S+GS+ LDIALG GG+P+GR+VE
Sbjct: 80  RRQALDGVLHQIERCYGRGSILKMGDTTSM--DVETSSTGSMTLDIALG-GGYPRGRVVE 136

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH +A+ QKTGG  AF+DAEHALD  YA +LGVD+ +LL+SQPD+GE
Sbjct: 137 IYGPESSGKTTLALHALAEIQKTGGVAAFIDAEHALDPAYADRLGVDVADLLVSQPDSGE 196

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
            AL++ D LVRS AVD++V+DSVAAL PRAE+EG+M +   G+QARLMS+A+RK+T S+S
Sbjct: 197 MALDVVDQLVRSNAVDMVVVDSVAALVPRAELEGEMADMQMGLQARLMSKAMRKVTGSLS 256

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S+C +VF+NQ+R KIGV++GSPE T+GGNALK+YSSVRLD+RR  S++D   IT    +
Sbjct: 257 KSQCTVVFLNQLRSKIGVIYGSPEVTSGGNALKYYSSVRLDVRRKESLRDNAGIT---VK 313

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV KNK+A PF+ VE DI++G GI     L+D    A    + G+W+S++G+ + QGR 
Sbjct: 314 VKVAKNKIAPPFRVVEMDILFGTGIDTVSCLLDAAEDAGFFTRKGSWYSYEGKNVSQGRL 373

Query: 312 NSKIFLRENIEIAENIESLLRQN 334
           N+   L+EN  + E ++  +R +
Sbjct: 374 NTVAHLKENQALRETLQDQVRAH 396


>gi|189308779|gb|ACD87091.1| RecA [Vibrio sp. PP-204]
          Length = 259

 Score =  375 bits (962), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 176/257 (68%), Positives = 218/257 (84%), Gaps = 2/257 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 5   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 62

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 63  LIAAAQRVGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 122

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 123 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 182

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIKD D I GN+TR+KVVKNK+A+PFKQ 
Sbjct: 183 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEIVGNETRIKVVKNKIAAPFKQA 242

Query: 267 EFDIMYGEGISFFGELI 283
           E  I+YG+G +  GELI
Sbjct: 243 ETQILYGQGFNREGELI 259


>gi|145219155|ref|YP_001129864.1| recombinase A [Prosthecochloris vibrioformis DSM 265]
 gi|145205319|gb|ABP36362.1| recA protein [Chlorobium phaeovibrioides DSM 265]
          Length = 349

 Score =  375 bits (962), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/321 (61%), Positives = 256/321 (79%), Gaps = 1/321 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K K L+ A+  +++ +GKGAIM+LG   ++ + ++ +S+GS+ LD ALG+GG P+GR+ E
Sbjct: 18  KLKQLDLAVDSLEKQFGKGAIMRLGDDSAVMQ-VQAISTGSMTLDFALGVGGLPRGRVTE 76

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH IA++QK GG  A VDAEHA D  YAR+LGVD+  LLISQP++GE
Sbjct: 77  IYGPESSGKTTLALHVIAEAQKAGGIAAIVDAEHAFDPSYARRLGVDINALLISQPESGE 136

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL I + LVRSGAVD++ +DSVAAL P+AE+EG+MG+++ G+QARLMSQALRKLT +IS
Sbjct: 137 QALSIVETLVRSGAVDVVAVDSVAALVPQAELEGEMGDTVVGLQARLMSQALRKLTGAIS 196

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S C  +FINQ+R KIGVM+GSPETTTGG ALKFYSS+RLDIRR+  +KD D+I GN+T+
Sbjct: 197 KSSCSCIFINQLRDKIGVMYGSPETTTGGKALKFYSSIRLDIRRIAQLKDGDAIIGNRTK 256

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF+  EFDI+YGEGIS  GELIDL V+  +V K+G+WFS+   +LGQGRE
Sbjct: 257 VKVVKNKVAPPFRIAEFDILYGEGISMLGELIDLAVEFGVVKKAGSWFSYGPDKLGQGRE 316

Query: 312 NSKIFLRENIEIAENIESLLR 332
             K  L E+ E+ E +   +R
Sbjct: 317 AVKKALGEDRELFEKVHGQVR 337


>gi|306517925|emb|CBL53386.1| recombination-repair protein [Photobacterium ganghwense]
          Length = 254

 Score =  375 bits (962), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 173/249 (69%), Positives = 214/249 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 6   VETVSTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAAAQRDGKTCAFIDAE 65

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGAVDI+V+DSVAALTP+AEIE
Sbjct: 66  HALDPVYAKKLGVDIDQLLVSQPDTGEQALEIADALARSGAVDILVVDSVAALTPKAEIE 125

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 126 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 185

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ +  I+YG+G +  GEL+D
Sbjct: 186 FYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKQADTQILYGQGFNRNGELVD 245

Query: 285 LGVKASIVD 293
           LGVK  +++
Sbjct: 246 LGVKHKMIE 254


>gi|211774528|gb|AAX33837.2| RecA [Aeromonas schubertii]
          Length = 239

 Score =  375 bits (962), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/238 (75%), Positives = 205/238 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S GSL LDIALGIGG P GRIVEIYGPESSGKTTL L  IA++QK G TCAFVDAE
Sbjct: 2   IEAISKGSLSLDIALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGV++ +LL+SQPDTGEQA EI DMLVRSGAVD+I++DSVAALTP+AEIE
Sbjct: 62  HALDPIYAAKLGVNVDDLLVSQPDTGEQAPEICDMLVRSGAVDVIIVDSVAALTPKAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G MG+S  G+Q RLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 122 GQMGDSHVGLQGRLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGNPETTTGGNALK 181

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           FY+SVRLDIRR G+IKD + + GN+TRVKVVKNK+A PFKQ EF IMYG GIS  GEL
Sbjct: 182 FYASVRLDIRRTGAIKDGEEVVGNETRVKVVKNKVAPPFKQAEFQIMYGAGISKEGEL 239


>gi|3425921|emb|CAA11611.1| recA [Neisseria elongata]
          Length = 237

 Score =  375 bits (962), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 175/237 (73%), Positives = 208/237 (87%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLG+D+ALG+GG P+GRIVEI+GPESSGKTTL L TIAQ QK GG CAF+DAE+A D
Sbjct: 1   STGSLGVDLALGVGGLPRGRIVEIFGPESSGKTTLCLETIAQCQKNGGVCAFIDAENAFD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYARKLGV ++ L++SQPDTGEQALEI DMLVRSG VD++VIDSVAAL P+AEIEGDMG
Sbjct: 61  PIYARKLGVKVEELMVSQPDTGEQALEICDMLVRSGGVDMVVIDSVAALVPKAEIEGDMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRKLT  I ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+S
Sbjct: 121 DSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           VRLDIRR G IK  D + GN+T+VKV+KNK+A PF+Q EFDI+YGEG+++ GELIDL
Sbjct: 181 VRLDIRRTGQIKKGDDVIGNETKVKVIKNKVAPPFRQAEFDILYGEGVTWEGELIDL 237


>gi|206896302|ref|YP_002247160.1| protein RecA [Coprothermobacter proteolyticus DSM 5265]
 gi|206738919|gb|ACI17997.1| protein RecA [Coprothermobacter proteolyticus DSM 5265]
          Length = 344

 Score =  375 bits (962), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/333 (54%), Positives = 248/333 (74%), Gaps = 2/333 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M+     N  DK KAL+  +  +++ +GKG++M+LG  GS  + +E +S+G+L LD+ALG
Sbjct: 1   METTDRQNQDDKQKALDMTVQYVEKRFGKGSLMRLGETGSRMQ-VETISTGALTLDLALG 59

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG P+GRIVEIYGPE SGKTTLALH IA +QK GGT  F+DAEHALD +YARKLGVD++
Sbjct: 60  IGGIPRGRIVEIYGPEGSGKTTLALHIIANAQKNGGTAVFIDAEHALDPVYARKLGVDVE 119

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL ISQPD GEQALEI + L +SGAVD+IVIDSVAAL P+AE++G++G+S  G+QARLMS
Sbjct: 120 NLYISQPDYGEQALEIAEELSKSGAVDVIVIDSVAALVPKAELDGEIGDSFMGLQARLMS 179

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT   S++   +VF+NQ+R K+G+ FG+PE T GG ALKF++S R+++R+  +I 
Sbjct: 180 QALRKLTGIASKTGTAIVFLNQLREKVGITFGNPEVTPGGRALKFFASARIELRKSENIG 239

Query: 241 DK-DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
              D+  G   + K+VKNK+A PF+   FD+ +G+GIS+   ++D  + A ++ KSG+W+
Sbjct: 240 GSGDASEGAVIKAKIVKNKLAPPFRTATFDLYFGKGISWTASVVDAALIAGVIQKSGSWY 299

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           S+   RLGQG+EN+  FL E+ E    IES +R
Sbjct: 300 SYNDIRLGQGKENAVSFLEEHPETLAEIESAVR 332


>gi|160915268|ref|ZP_02077481.1| hypothetical protein EUBDOL_01276 [Eubacterium dolichum DSM 3991]
 gi|158433067|gb|EDP11356.1| hypothetical protein EUBDOL_01276 [Eubacterium dolichum DSM 3991]
          Length = 339

 Score =  375 bits (962), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/323 (56%), Positives = 256/323 (79%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K+  L+ A+ +I++ +GKG+IM+LG +  +   ++ +SSGS+ +D ALGIGG+PKGRI+
Sbjct: 11  EKNALLDDAIKKIEKQFGKGSIMKLGDRSGVE--VDAISSGSIKIDEALGIGGYPKGRII 68

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH IAQ QK GG  AF+DAE+A+D  YA+ LGV++  L++SQPD+G
Sbjct: 69  EIYGPESSGKTTLALHAIAQVQKQGGRAAFIDAENAIDPNYAKNLGVNIDELILSQPDSG 128

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEITD+L+RSGA+D++V+DSVAAL P+AE++G+MG+   G QAR+MS+A+RKL+  +
Sbjct: 129 EQGLEITDLLIRSGAIDLVVVDSVAALVPQAELDGEMGDMQVGAQARMMSKAMRKLSGVM 188

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +RS+C  +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+RR  +IK+   I GN+ 
Sbjct: 189 NRSECTAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRRSEAIKNGTEIIGNKV 248

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
            VKVVKNK+A PFK    +IMYGEGIS+  EL+DL V   IV KSGAWFS+ G+++GQG+
Sbjct: 249 NVKVVKNKVAPPFKTAAIEIMYGEGISYVAELLDLCVDHEIVMKSGAWFSYNGEKIGQGK 308

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           E +K +++   E+ E + + L++
Sbjct: 309 EAAKNYIKARPELMEELAAKLKE 331


>gi|3421224|emb|CAA11594.1| recA [Neisseria lactamica]
 gi|3421226|emb|CAA11595.1| recA [Neisseria lactamica]
 gi|3421228|emb|CAA11596.1| recA [Neisseria lactamica]
 gi|3421230|emb|CAA11597.1| recA [Neisseria lactamica]
          Length = 237

 Score =  374 bits (961), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 175/237 (73%), Positives = 206/237 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKTTL L  +AQ QK GG CAFVDAEHA D
Sbjct: 1   STGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGV ++ L +SQPDTGEQALEI D LVRSG VD++V+DSVAAL P+AEIEGDMG
Sbjct: 61  PVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGVDMVVVDSVAALVPKAEIEGDMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRKLT  I ++  +++FINQ+RMKIGVMFGSPETTTGGNALKFYSS
Sbjct: 121 DSHVGLQARLMSQALRKLTGHIKKTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYSS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           VRLDIRR GSIK  + + GN+TRVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+
Sbjct: 181 VRLDIRRTGSIKKGEEVLGNETRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDI 237


>gi|1890214|emb|CAA72503.1| recA [Neisseria lactamica]
 gi|1890216|emb|CAA72504.1| recA [Neisseria lactamica]
 gi|1890218|emb|CAA72499.1| recA [Neisseria polysaccharea]
 gi|1890220|emb|CAA72500.1| recA [Neisseria polysaccharea]
 gi|1890222|emb|CAA72501.1| recA [Neisseria polysaccharea]
 gi|1890224|emb|CAA72502.1| recA [Neisseria polysaccharea]
 gi|3421232|emb|CAA11598.1| recA [Neisseria meningitidis]
 gi|3421234|emb|CAA11599.1| recA [Neisseria meningitidis]
          Length = 237

 Score =  374 bits (961), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 175/237 (73%), Positives = 206/237 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKTTL L  +AQ QK GG CAFVDAEHA D
Sbjct: 1   STGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGV ++ L +SQPDTGEQALEI D LVRSG +D++V+DSVAAL P+AEIEGDMG
Sbjct: 61  PVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRKLT  I ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSS
Sbjct: 121 DSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           VRLDIRR GSIK  + + GN+TRVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+
Sbjct: 181 VRLDIRRTGSIKKGEEVLGNETRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDI 237


>gi|226320677|ref|ZP_03796235.1| protein RecA [Borrelia burgdorferi 29805]
 gi|226233893|gb|EEH32616.1| protein RecA [Borrelia burgdorferi 29805]
          Length = 365

 Score =  374 bits (961), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/325 (54%), Positives = 255/325 (78%), Gaps = 4/325 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K +A+E A  QI++ +GKG+++++G +  + +GI+ +SSGS+ LD ALGIGG+P+GRI+E
Sbjct: 20  KEEAIELARVQIEKAFGKGSLIKMG-ESPVGQGIKSMSSGSIILDEALGIGGYPRGRIIE 78

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+ LGV++  L +SQPDTGE
Sbjct: 79  IFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQPDTGE 138

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI + L+RSG VD+IV+DSVAALTP+ EI+G+MG+S  G+QARLMS+ALRK+T  +S
Sbjct: 139 QALEIAEHLIRSGGVDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKITGILS 198

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKDSITGN 248
           +S   ++FINQ+R++IGVMFG+PETTTGGNALKFYSS+RL++R++  +      D + GN
Sbjct: 199 KSNTCIMFINQIRIRIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTRSGSSDDVIGN 258

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + RVK+VKNK+A PF++VE  I +G+GIS    ++D  +K +++ K+G+W+S    +LGQ
Sbjct: 259 KIRVKIVKNKVAPPFRKVELIIYFGKGISREAGILDAAIKHNLIQKTGSWYSLGDNKLGQ 318

Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333
           GRE+   +L + +E+A N++  LR+
Sbjct: 319 GRESVIEYLSKEVELANNLDKRLRK 343


>gi|296111784|ref|YP_003622166.1| recombinase A [Leuconostoc kimchii IMSNU 11154]
 gi|295833316|gb|ADG41197.1| recombinase A [Leuconostoc kimchii IMSNU 11154]
          Length = 382

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/354 (56%), Positives = 262/354 (74%), Gaps = 6/354 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL +I++ +GKG++M LG        +E   SGS+ LD+ALG+GG+PKGRI+E
Sbjct: 19  RKAALDEALKKIEKNFGKGSVMVLGDNA--LTQVETYPSGSVKLDVALGVGGYPKGRIIE 76

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  YA  LGV    LL+SQPDTGE
Sbjct: 77  VYGPESSGKTTIALHAVAEVQKAGGTAAYIDAENALDVKYAEALGVKKDELLLSQPDTGE 136

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q LEI D LV+SGAVD+IV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL  +++
Sbjct: 137 QGLEIADALVQSGAVDMIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGTLN 196

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           R+  I +FINQ+R KIGVMFG+PETT GG ALKFYS++RL++RR   IKD   +TGN T+
Sbjct: 197 RTGTIAIFINQIREKIGVMFGNPETTPGGRALKFYSTIRLEVRRSTQIKDGTDVTGNLTK 256

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PFK  E DIMYG+GIS  GE++DLG +  I+ K+GA++ +   ++GQGRE
Sbjct: 257 VKVVKNKVAPPFKVAEVDIMYGKGISQTGEILDLGAEQEIIRKAGAFYYYNDIKVGQGRE 316

Query: 312 NSKIFL--RENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            +K FL   EN E+ + I + +R   G + D    E  + + D +D D TD +E
Sbjct: 317 KAKEFLDAPENAEMRQEIYTKVRDAFG-IGDGDSSE-MLESDDVSDLDQTDTLE 368


>gi|224534198|ref|ZP_03674776.1| protein RecA [Borrelia spielmanii A14S]
 gi|224514300|gb|EEF84616.1| protein RecA [Borrelia spielmanii A14S]
          Length = 366

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/326 (53%), Positives = 256/326 (78%), Gaps = 4/326 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +A+E A  QI++ +GKG+++++G +  + +GI+ +SSGS+ LD ALGIGG+P+GRI+
Sbjct: 19  NKEEAIELARVQIEKTFGKGSLIKMG-ESPVGKGIKSMSSGSIVLDEALGIGGYPRGRII 77

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+ LGV++  L +SQPDTG
Sbjct: 78  EIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVSELWLSQPDTG 137

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L+RSG +D+IV+DSVAALTP+ EI+G+MG+S  G+QARLMS+ALRK+T  +
Sbjct: 138 EQALEIAEHLIRSGGIDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKITGIL 197

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKDSITG 247
           S+S   ++FINQ+RM+IG+MFG+PETTTGGNALKFYSS+RL++R++  I      D + G
Sbjct: 198 SKSNTCIMFINQIRMRIGIMFGNPETTTGGNALKFYSSLRLEVRKIEQITKSGSSDDVIG 257

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+ RVK+VKNK+A PF++VE  I +G+GIS    ++D  +K +++ K+G+W+S    +LG
Sbjct: 258 NKIRVKIVKNKVAPPFRKVELVIYFGKGISREAGILDSAIKHNLIQKTGSWYSLGDNKLG 317

Query: 308 QGRENSKIFLRENIEIAENIESLLRQ 333
           QGRE+   +L + +E+A +++  LR+
Sbjct: 318 QGRESVIEYLSKEVELANDLDKRLRE 343


>gi|313678361|ref|YP_004056101.1| RecA protein [Mycoplasma bovis PG45]
 gi|312950708|gb|ADR25303.1| RecA protein [Mycoplasma bovis PG45]
          Length = 330

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/316 (56%), Positives = 243/316 (76%), Gaps = 1/316 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           +++ L++I R +G  AIM   +Q +I E +EV SSGS  L+ ALGIGG+PKGRIVEIYGP
Sbjct: 15  IKSTLNEITRKFGAEAIMMF-NQDTIDEKVEVFSSGSYLLNNALGIGGYPKGRIVEIYGP 73

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL LH IA+ QK GG  AF+DAEHA+D +YAR LG+DL  L++SQPD+GEQA+E
Sbjct: 74  ESSGKTTLCLHAIAEVQKQGGIAAFIDAEHAIDPLYARNLGIDLNTLILSQPDSGEQAME 133

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D+L +SGAVD+IV+DSVAAL P AE+EG+M +   G+QARLMS+ALRK+T S+ ++K 
Sbjct: 134 IVDILAKSGAVDLIVVDSVAALVPIAELEGEMRDMQVGVQARLMSKALRKITGSLHKNKT 193

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
            ++F+NQ+R KIGVMFG+PETTTGG ALKFY+S+RL++R+  SI +   ITGN+ ++KVV
Sbjct: 194 TVIFVNQIREKIGVMFGNPETTTGGRALKFYASIRLEVRKTTSITEGKDITGNEIKIKVV 253

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK+++P+K    +I++ +GI   GELIDL  +  + DK GAW++++G+ + QG+   K 
Sbjct: 254 KNKLSAPYKTFTTEILFSKGIDSTGELIDLACEKGVFDKKGAWYAYEGKNITQGKRALKD 313

Query: 316 FLRENIEIAENIESLL 331
           FL  N E  + IE L+
Sbjct: 314 FLENNPEFKQEIEKLV 329


>gi|304564687|gb|ADM45207.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 264

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/266 (66%), Positives = 224/266 (84%), Gaps = 2/266 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++Q
Sbjct: 1   MRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVID
Sbjct: 59  KMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG
Sbjct: 119 SVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMY
Sbjct: 179 NPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMY 238

Query: 273 GEGISFFGELIDLGVKASIVDKSGAW 298
           GEGIS  G ++D+G    I++KSGAW
Sbjct: 239 GEGISREGSILDIGASIDIIEKSGAW 264


>gi|157326969|gb|ABV44597.1| RecA [Burkholderia vietnamiensis]
          Length = 245

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 174/244 (71%), Positives = 216/244 (88%)

Query: 96  GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
           GT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVA
Sbjct: 1   GTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVA 60

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
           AL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PE
Sbjct: 61  ALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPE 120

Query: 216 TTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275
           TTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEG
Sbjct: 121 TTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEG 180

Query: 276 ISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
           IS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ +R++ 
Sbjct: 181 ISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIRESL 240

Query: 336 GLVA 339
           G+VA
Sbjct: 241 GVVA 244


>gi|30691959|gb|AAP33473.1| recombinase A [Pantoea stewartii subsp. indologenes]
          Length = 253

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/255 (69%), Positives = 218/255 (85%), Gaps = 2/255 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPE+SGKTTL L  I
Sbjct: 1   KGSIMPLGEARSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIG
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D++ G++TRVKVVKNK+A+PFKQ EF
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSETRVKVVKNKIAAPFKQAEF 238

Query: 269 DIMYGEGISFFGELI 283
            IMYGEGI+ FGE++
Sbjct: 239 QIMYGEGINTFGEVV 253


>gi|302335743|ref|YP_003800950.1| RecA protein [Olsenella uli DSM 7084]
 gi|301319583|gb|ADK68070.1| RecA protein [Olsenella uli DSM 7084]
          Length = 364

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/337 (60%), Positives = 260/337 (77%), Gaps = 2/337 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ K +EA  S+I++ +GKGAIM+ G  G   E IE + +GSL LD ALGIGG P+GRI+
Sbjct: 19  EREKMIEATTSEIEKKFGKGAIMKYGEDGPDLE-IEAIPTGSLALDAALGIGGVPRGRII 77

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+L  +A++Q  GG  AF+DAEHALD  YA ++GVD+  +LISQPDTG
Sbjct: 78  EIYGPESSGKTTLSLEVLAEAQAMGGVVAFIDAEHALDPGYAARIGVDIDEVLISQPDTG 137

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D++V+DSVAAL PRAEIEG++G++  G+QARLMSQALRKL  S+
Sbjct: 138 EQALEICDMLVRSGAIDVVVVDSVAALVPRAEIEGEIGDTTVGLQARLMSQALRKLAGSL 197

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+SK   +FINQ+R KIGVMFG+PETT GG ALKF+SSVR+DIRR+ SIK      G++ 
Sbjct: 198 SKSKTTCIFINQLREKIGVMFGNPETTPGGRALKFFSSVRMDIRRIDSIKRNGESVGSRV 257

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDIMYG GIS  G L+D+ V   IV+KSGAWF++  +RLGQGR
Sbjct: 258 RVKVVKNKVAPPFKQAEFDIMYGTGISKEGSLLDMAVDFDIVNKSGAWFTYGTERLGQGR 317

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL-VADSLLQEP 346
           E +K FL  N ++ + I+  +R   GL + D  + EP
Sbjct: 318 EAAKEFLMANPDLMDEIDHKVRVACGLELGDERVGEP 354


>gi|51598395|ref|YP_072583.1| recombinase A [Borrelia garinii PBi]
 gi|59798194|sp|Q662N0|RECA_BORGA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|51572966|gb|AAU06991.1| recA protein [Borrelia garinii PBi]
          Length = 362

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/330 (53%), Positives = 257/330 (77%), Gaps = 4/330 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M  V K +A+E A  QI++ +GKG+++++G + S+ +GI+ +SSGS+ LD ALGIGG+P+
Sbjct: 15  MERVKKEEAIELARVQIEKTFGKGSLIKIG-ESSVGKGIKSISSGSIVLDEALGIGGYPR 73

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHAL+ +YA+ LGV++  L +SQ
Sbjct: 74  GRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALNPVYAKALGVNVSELWLSQ 133

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI + L+RSG +D+IV+DSVAALTP+ EI+G+MG+S  G+QARLMS++LRK+
Sbjct: 134 PDTGEQALEIAEHLIRSGGIDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKSLRKI 193

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKD 243
           T  +S+S   ++FINQ+RM+IG+MFG+PETT GGNALKFYSS+RL++R++  I      D
Sbjct: 194 TGILSKSNTCIMFINQIRMRIGIMFGNPETTAGGNALKFYSSLRLEVRKIEQITRSGSSD 253

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+ RVK+VKNK+A PF++VE  I +G+GIS    ++D  +K +++ K+G+W+S   
Sbjct: 254 DVIGNKIRVKIVKNKVAPPFRKVELVIYFGKGISREAGILDAALKHNLIQKTGSWYSLGN 313

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQ 333
            +LGQGRE+   +L + +E+A +++  LR+
Sbjct: 314 NKLGQGRESVVEYLNKEVELANDLDKRLRK 343


>gi|54792445|emb|CAE45602.1| recombination-repair protein [Vibrio ordalii]
 gi|54792447|emb|CAE45603.1| recombination-repair protein [Listonella anguillarum]
 gi|58415594|emb|CAH57211.1| recA protein [Vibrio ordalii]
          Length = 256

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/258 (67%), Positives = 219/258 (84%), Gaps = 2/258 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQRVGKTCAFIDAEHALDPIYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVIVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELID 284
           +  I+YG+G +  GEL+D
Sbjct: 239 DTQILYGQGFNREGELVD 256


>gi|187735169|ref|YP_001877281.1| recA protein [Akkermansia muciniphila ATCC BAA-835]
 gi|187425221|gb|ACD04500.1| recA protein [Akkermansia muciniphila ATCC BAA-835]
 gi|283468510|emb|CAP18781.1| putative bacterial recombination protein recA [Akkermansia
           muciniphila]
          Length = 346

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/322 (56%), Positives = 246/322 (76%), Gaps = 3/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + + L+ ALSQIQ+ +G+ AIM+LG   ++   ++V+ +G+L +D ALG+GGF +GRIVE
Sbjct: 18  RKRNLDLALSQIQKDFGENAIMRLGD--NVKMEVDVIPTGNLLIDRALGVGGFARGRIVE 75

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL L  IAQ+QK+GG  AF+D EHALD  YA +LGV+L +LL+SQP +GE
Sbjct: 76  IYGPESSGKTTLTLTAIAQAQKSGGLAAFIDVEHALDPQYAARLGVNLDDLLVSQPSSGE 135

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           +AL+I + LVRS A+D+IV+DSVAAL  + E+EG++G+S  G QARLMS ALRKLTS IS
Sbjct: 136 EALQICEALVRSNAIDVIVVDSVAALVTKQELEGEIGDSTVGAQARLMSAALRKLTSFIS 195

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-ITGNQT 250
           +++ + +F NQ+R KIGVMFG+PETT GG ALKFY+SVR+DIRR+G IK  D  I GN+T
Sbjct: 196 KARTVCIFTNQIREKIGVMFGNPETTPGGRALKFYASVRVDIRRIGQIKGSDGVIAGNRT 255

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF + EFDIMY EGIS  G L+DL  +  I+ K G+W S+ G ++ QGR
Sbjct: 256 KIKVVKNKVAPPFTECEFDIMYNEGISSVGSLLDLATEYDIIQKRGSWISYNGSQIAQGR 315

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           + +K  L+ N E+   IE  ++
Sbjct: 316 DAAKEALKSNPELYAEIEEQVK 337


>gi|78186163|ref|YP_374206.1| recombinase A [Chlorobium luteolum DSM 273]
 gi|78166065|gb|ABB23163.1| RecA DNA recombination protein [Chlorobium luteolum DSM 273]
          Length = 348

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/321 (61%), Positives = 257/321 (80%), Gaps = 1/321 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K K L  A+  +++ +GKGAIM+LG   ++ + ++ +S+GS+ LD ALG+GG P+GR+ E
Sbjct: 17  KLKQLNLAVEALEKQFGKGAIMRLGDDSAVMQ-VQSISTGSMTLDFALGVGGLPRGRVTE 75

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH IA++QK GG  A VDAEHA D  YARKLGVD+  +LISQP++GE
Sbjct: 76  IYGPESSGKTTLALHVIAEAQKAGGIAALVDAEHAFDPSYARKLGVDINAMLISQPESGE 135

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL I + LVRSGAVD++V+DSVAAL P+AE+EG+MG+S+ G+QARLMSQALRKLT +IS
Sbjct: 136 QALSIVETLVRSGAVDVVVVDSVAALVPQAELEGEMGDSVVGLQARLMSQALRKLTGAIS 195

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S  + +FINQ+R KIGVM+GSPETTTGG ALKFYSS+RLDIR++  +KD D I GN+T+
Sbjct: 196 KSSSVCIFINQLRDKIGVMYGSPETTTGGKALKFYSSIRLDIRKIAQLKDGDEIIGNRTK 255

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF+  EFDI+YGEGIS  GELIDL V+  +V K+G+WFS+   +LGQGRE
Sbjct: 256 VKVVKNKVAPPFRIAEFDILYGEGISLMGELIDLAVEFGVVKKAGSWFSYGPDKLGQGRE 315

Query: 312 NSKIFLRENIEIAENIESLLR 332
             K  LRE+ E+ + + S ++
Sbjct: 316 AVKKALREDPELFKKVHSQVK 336


>gi|302023157|ref|ZP_07248368.1| recombinase A [Streptococcus suis 05HAS68]
          Length = 330

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/304 (58%), Positives = 237/304 (77%), Gaps = 4/304 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +SSGSL +DIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHAL
Sbjct: 1   MSSGSLSIDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKDGGIAAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+
Sbjct: 61  DPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDI 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QAR+MSQA+RKL +SI+++K + +FINQ+R K+GVMFG+PETT GG ALKFY+
Sbjct: 121 GDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYA 180

Query: 228 SVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           SVR+D+R    IK     KD   G +T+VK+VKNK+A PFK+   +IMYGEGIS  GELI
Sbjct: 181 SVRMDVRGNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELI 240

Query: 284 DLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343
           ++G    I+ K+GAW+S+ G+++GQG EN+K FL +N  I + I+  +R + GL+    +
Sbjct: 241 EIGSNLGIIQKAGAWYSYNGEKIGQGSENAKKFLADNPAIFDEIDRKIRVHYGLIEADGV 300

Query: 344 QEPA 347
           +E A
Sbjct: 301 EEVA 304


>gi|203284057|ref|YP_002221797.1| recA protein [Borrelia duttonii Ly]
 gi|226723625|sp|B5RLK6|RECA_BORDL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|201083500|gb|ACH93091.1| recA protein [Borrelia duttonii Ly]
          Length = 363

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/328 (54%), Positives = 256/328 (78%), Gaps = 3/328 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N ++K KA+E A  QI++ +GKG+++++G +  + + +E + SGS+ LD A+GIGG+P+G
Sbjct: 14  NKLNKEKAIELARVQIEKDFGKGSLIKMG-ESPVGKYLESIPSGSILLDEAIGIGGYPRG 72

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R+VEI+GPESSGKTTL L  IA+ QKTGG  AF+DAEHALD +YAR LGV++  L +SQP
Sbjct: 73  RVVEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQP 132

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQAL+I + L+RSG VD+IV+DSVAALTP+AEI+G+MG++  G+QARLMS+ALRK+T
Sbjct: 133 DTGEQALDIAEYLIRSGGVDLIVVDSVAALTPQAEIDGEMGDTQIGLQARLMSKALRKIT 192

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI--KDKDSI 245
           + +S+S   ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V  +     D++
Sbjct: 193 AILSKSNTCIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKVEQVIGSSSDNV 252

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+ RVKVVKNK+A PF++ E  + +G+GIS    ++D  +K ++V KSG+W++     
Sbjct: 253 IGNKIRVKVVKNKVAPPFRKAELIVYFGKGISREASILDAAIKYNLVQKSGSWYAMGDDN 312

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQ 333
           LGQGREN   +L +   +A  +E+ LR+
Sbjct: 313 LGQGRENVIEYLFKEKALANELENKLRK 340


>gi|170017614|ref|YP_001728533.1| hypothetical protein LCK_01264 [Leuconostoc citreum KM20]
 gi|169804471|gb|ACA83089.1| RecA [Leuconostoc citreum KM20]
          Length = 381

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/328 (58%), Positives = 249/328 (75%), Gaps = 4/328 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL +I++ +GKG++M LG        IE   SGS+ LD+ALG+GG+PKGRI+E
Sbjct: 19  RKAALDEALKKIEKNFGKGSVMVLGDNA--LTQIETYPSGSVKLDVALGVGGYPKGRIIE 76

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH +A+ QK GGT A++DAE+ALD  YA  LGV    LL+SQPDTGE
Sbjct: 77  IYGPESSGKTTLALHAVAEVQKAGGTAAYIDAENALDVKYAEALGVQKDELLLSQPDTGE 136

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q LEI D LV+SGAVDIIV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL  +++
Sbjct: 137 QGLEIADALVQSGAVDIIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGTLN 196

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           R+  I +FINQ+R KIGVMFG+PETT GG ALKFYS++RL++RR   IKD   +TGN T+
Sbjct: 197 RTGTIAIFINQIREKIGVMFGNPETTPGGRALKFYSTIRLEVRRSTQIKDGTDVTGNLTK 256

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PFK  E DIMYG+G+S  GE++DLG +  I+ K+GA++ +   ++GQGRE
Sbjct: 257 VKVVKNKVAPPFKVAEIDIMYGKGVSQTGEILDLGAEQEIIRKAGAFYYYDDVKIGQGRE 316

Query: 312 NSKIFL--RENIEIAENIESLLRQNAGL 337
            +K FL   EN ++ + I   +R   G+
Sbjct: 317 KAKEFLDDPENADMRQTIYEKVRNAFGI 344


>gi|54792497|emb|CAE45628.1| recombination-repair protein [Vibrio navarrensis]
 gi|58415578|emb|CAH57203.1| recA protein [Vibrio navarrensis]
          Length = 257

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/259 (67%), Positives = 219/259 (84%), Gaps = 2/259 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAV
Sbjct: 59  LIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDQLLVSQPDTGEQALEICDALARSGAV 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFK+ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKEA 238

Query: 267 EFDIMYGEGISFFGELIDL 285
              IMYG+G +  GELIDL
Sbjct: 239 NTQIMYGQGFNREGELIDL 257


>gi|325283285|ref|YP_004255826.1| Protein recA [Deinococcus proteolyticus MRP]
 gi|324315094|gb|ADY26209.1| Protein recA [Deinococcus proteolyticus MRP]
          Length = 371

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/320 (57%), Positives = 252/320 (78%), Gaps = 3/320 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KA++ ALSQI++ +GKG+IM+LG++  +   ++ +S+GS+ LD+ALG+GG P+GR+ 
Sbjct: 18  ERQKAIDTALSQIEKQFGKGSIMKLGAESKL--DVQTISTGSMSLDLALGVGGVPRGRVT 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPES GKTTLAL  IAQ+QK GGT AF+DAEHALD +YAR LGV+   LL+SQPD G
Sbjct: 76  EIYGPESGGKTTLALSIIAQAQKAGGTAAFIDAEHALDPVYARALGVNTDELLVSQPDNG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI ++LVRSGA+DI+V+DSVAALTP+AEIEGDMG+SLPG+QARLMSQALRKLTS +
Sbjct: 136 EQALEIMELLVRSGAMDIVVVDSVAALTPKAEIEGDMGDSLPGLQARLMSQALRKLTSIL 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQ 249
           S++    +FINQ+R KIGVM+G+PETTTGG ALKFYSSVRLD+R++G  IK  +    N 
Sbjct: 196 SKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYSSVRLDVRKIGQPIKVGNDAVANT 255

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VK VKNK+A+PFK+VE  ++YG+G     +L+ L     I+ K+G+++S+   R+GQG
Sbjct: 256 VKVKTVKNKVAAPFKEVELALVYGKGFDQLNDLVTLASDMDIIKKAGSFYSYGDDRIGQG 315

Query: 310 RENSKIFLRENIEIAENIES 329
           +E +  ++ E  E+ + I +
Sbjct: 316 KEKAMQYIAERPELEDEIRA 335


>gi|54792475|emb|CAE45617.1| recombination-repair protein [Vibrio splendidus]
          Length = 255

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/257 (68%), Positives = 218/257 (84%), Gaps = 2/257 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELI 283
           E  I+YG+G +  GELI
Sbjct: 239 ETQILYGKGFNREGELI 255


>gi|304564525|gb|ADM45126.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564531|gb|ADM45129.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564537|gb|ADM45132.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 263

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 174/254 (68%), Positives = 219/254 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE
Sbjct: 10  VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 69

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+
Sbjct: 70  HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 129

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 130 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 189

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D
Sbjct: 190 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 249

Query: 285 LGVKASIVDKSGAW 298
           +G    I++KSGAW
Sbjct: 250 IGASIDIIEKSGAW 263


>gi|56181891|gb|AAV83926.1| RecA [Burkholderia cepacia]
          Length = 239

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/235 (74%), Positives = 207/235 (88%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
           G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT 
Sbjct: 5   GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTA 64

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL 
Sbjct: 65  AFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALV 124

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTT
Sbjct: 125 PKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTT 184

Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           GGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YG
Sbjct: 185 GGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYG 239


>gi|300172949|ref|YP_003772115.1| RecA protein [Leuconostoc gasicomitatum LMG 18811]
 gi|299887328|emb|CBL91296.1| RecA protein [Leuconostoc gasicomitatum LMG 18811]
          Length = 381

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/328 (59%), Positives = 250/328 (76%), Gaps = 4/328 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL +I++ +GKG++M LG   +    IE   SGS+ LD+ALG+GG+PKGRI+E
Sbjct: 19  RKTALDEALKKIEKNFGKGSVMFLGE--NTLTQIETYPSGSVKLDVALGVGGYPKGRIIE 76

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  YA  LGV    LL+SQPDTGE
Sbjct: 77  VYGPESSGKTTIALHAVAEVQKAGGTAAYIDAENALDVKYAEALGVQKDELLLSQPDTGE 136

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q LEI D LV+SGAVDIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL  +++
Sbjct: 137 QGLEIADALVQSGAVDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGTLN 196

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           R+  I +FINQ+R KIGVMFG+PETT GG ALKFYS++RL++RR   IKD   +TGN T+
Sbjct: 197 RTGTIAIFINQIREKIGVMFGNPETTPGGRALKFYSTIRLEVRRSTQIKDGTDVTGNLTK 256

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PFK  E DIMYG+GIS  GE++DLG +  I+ K+GA++ +   ++GQGRE
Sbjct: 257 VKVVKNKVAPPFKVAEVDIMYGKGISQTGEILDLGAEQEIIRKAGAFYYYNDIKIGQGRE 316

Query: 312 NSKIFL--RENIEIAENIESLLRQNAGL 337
            +K FL   EN E+ + I   +R   G+
Sbjct: 317 KAKEFLDAPENAEMRQEIYVKVRNAFGI 344


>gi|291320510|ref|YP_003515774.1| RecA protein [Mycoplasma agalactiae]
 gi|290752845|emb|CBH40820.1| RecA protein [Mycoplasma agalactiae]
          Length = 330

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/316 (55%), Positives = 244/316 (77%), Gaps = 1/316 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           +++ L++I R +G+ AIM   +Q SI E +E  SSGS  L+ ALGIGG+PKGRIVEIYGP
Sbjct: 15  IKSTLNEITRKFGQEAIMMF-NQDSIDEQVETFSSGSYLLNSALGIGGYPKGRIVEIYGP 73

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL LH IA+ QK GG  AF+DAEHA+D +YAR LG+DL  L++SQPD+GEQA+E
Sbjct: 74  ESSGKTTLCLHAIAEVQKQGGIAAFIDAEHAIDPLYARNLGIDLNTLILSQPDSGEQAME 133

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D+L +SGAVD+IV+DSVAAL P AE+EG+M +   G+QARLMS+ALRK+T ++ ++K 
Sbjct: 134 IVDILAKSGAVDLIVVDSVAALVPIAELEGEMRDMQVGVQARLMSKALRKITGNLHKNKT 193

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
            ++F+NQ+R KIGVMFG+PETTTGG ALKFY+S+RL++R+  SI +   ITGN+ ++KVV
Sbjct: 194 TVIFVNQIREKIGVMFGNPETTTGGRALKFYASIRLEVRKTTSITEGKDITGNEIKIKVV 253

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK+++P+K    +I++ +GI   GELI+L  +  I DK GAW++++G+ + QG+   K 
Sbjct: 254 KNKLSAPYKSFTTEILFSKGIDATGELIELSCEKGIFDKKGAWYAYQGKNITQGKRALKE 313

Query: 316 FLRENIEIAENIESLL 331
           FL  N+E  + IE L+
Sbjct: 314 FLENNLEFKQEIEKLV 329


>gi|3421274|emb|CAA11593.1| recA [Neisseria perflava]
          Length = 237

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 174/237 (73%), Positives = 206/237 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKTTL L  +AQ QK GG CAFVDAEHA D
Sbjct: 1   STGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGV ++ L +SQPDTGEQALEI D LVRSG ++++V+DSVAAL P+AEIEGDMG
Sbjct: 61  PVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGINMVVVDSVAALVPKAEIEGDMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRKLT  I ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSS
Sbjct: 121 DSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           VRLDIRR GSIK  + + GN+TRVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+
Sbjct: 181 VRLDIRRTGSIKKGEEVLGNETRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDI 237


>gi|54792160|emb|CAE54396.1| recombination-repair protein [Vibrio rumoiensis]
 gi|58415636|emb|CAH57232.1| recA protein [Vibrio rumoiensis]
          Length = 254

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/256 (68%), Positives = 218/256 (85%), Gaps = 2/256 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMKLGDNRTM--DVETISTGSLALDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD IYA+KLGV++ +LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQRVGKTCAFIDAEHALDPIYAQKLGVNINDLLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFGSPETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGSPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGEL 282
           E  I+YG+G +  GEL
Sbjct: 239 ETQILYGKGFNREGEL 254


>gi|304564521|gb|ADM45124.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 262

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 174/254 (68%), Positives = 219/254 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE
Sbjct: 9   VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 68

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+
Sbjct: 69  HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 128

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 129 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 188

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D
Sbjct: 189 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 248

Query: 285 LGVKASIVDKSGAW 298
           +G    I++KSGAW
Sbjct: 249 IGASIDIIEKSGAW 262


>gi|54792164|emb|CAE54398.1| recombination-repair protein [Vibrio coralliilyticus]
 gi|58415437|emb|CAH57133.1| recA protein [Vibrio coralliilyticus]
          Length = 255

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/257 (68%), Positives = 217/257 (84%), Gaps = 2/257 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELI 283
           E  IMYG G +  GELI
Sbjct: 239 ETQIMYGAGFNREGELI 255


>gi|218962127|ref|YP_001741902.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730784|emb|CAO81696.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Candidatus Cloacamonas
           acidaminovorans]
          Length = 351

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/331 (56%), Positives = 251/331 (75%), Gaps = 8/331 (2%)

Query: 9   IVDKSK--ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           ++DK+K  AL+ A+SQ+++ YG G +M+LG +    + ++V+ +G+L LDIALGIGG PK
Sbjct: 1   MLDKNKDAALKTAISQLEKKYGVGTLMRLGDKP--HQVVDVIPTGALNLDIALGIGGIPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI EIYG E+SGKTTLALH  A+ QK GG  AF+D EHALD IYA+ LGV   +LL+SQ
Sbjct: 59  GRITEIYGAEASGKTTLALHIAAECQKQGGIVAFIDVEHALDPIYAKHLGVITDDLLLSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT+ LVRS AVD+I+IDSVAAL P+ EIEG+MG+S  G+QARLMSQALRKL
Sbjct: 119 PDGGEQALEITETLVRSSAVDLIIIDSVAALVPKQEIEGEMGDSHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGV-MFGSPETTTGGNALKFYSSVRLDIRRVGSIKD---K 242
           T+ +S+S   ++FINQ RMKIG   + +PETTTGG ALKFY+SVRL++R    IKD   +
Sbjct: 179 TAIVSKSNTAVIFINQTRMKIGAGPYMNPETTTGGVALKFYASVRLEVRHGAQIKDVGSE 238

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
             + G +T+VKVVKNK A PFK VEF I++G+GIS    ++++ V+  I+ KSG+WFS+ 
Sbjct: 239 SQVIGTRTKVKVVKNKFAPPFKTVEFPIIFGQGISKLDIILEMAVQHDIIKKSGSWFSYN 298

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
             +LGQG + +K++L EN  + + IE+ LR+
Sbjct: 299 DLKLGQGADKTKLYLTENQPLLQEIEAKLRE 329


>gi|304415670|gb|ADM30941.1| recombinant DNA repair protein [Vibrio sp. MSSRF60]
 gi|304415672|gb|ADM30942.1| recombinant DNA repair protein [Vibrio sp. MSSRF64]
          Length = 245

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/245 (71%), Positives = 211/245 (86%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           L LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA
Sbjct: 1   LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQRVGKTCAFIDAEHALDPIYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           RKLGV++  LL+SQPDTGEQALEI D L RSGAVD++V+DSVAALTP+AEIEG+MG+S  
Sbjct: 61  RKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMVVDSVAALTPKAEIEGEMGDSHM 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD
Sbjct: 121 GLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 180

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           IRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ +  I+YG+G +  GELIDLGVK  +V
Sbjct: 181 IRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQADTQILYGQGFNREGELIDLGVKHKLV 240

Query: 293 DKSGA 297
           +KSGA
Sbjct: 241 EKSGA 245


>gi|54792505|emb|CAE45632.1| recombination-repair protein [Vibrio mimicus]
          Length = 258

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/260 (67%), Positives = 220/260 (84%), Gaps = 2/260 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAV
Sbjct: 59  LIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAV 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEA 238

Query: 267 EFDIMYGEGISFFGELIDLG 286
              IMYG+G +  GELIDLG
Sbjct: 239 NTQIMYGQGFNREGELIDLG 258


>gi|1842441|gb|AAB47709.1| RecA [Bacillus subtilis]
          Length = 280

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/281 (64%), Positives = 229/281 (81%), Gaps = 3/281 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG +      I  V SGSL LD ALGIGG+P+GRI+
Sbjct: 3   DRQAALDMALKQIEKQFGKGSIMKLGEKTDTR--ISTVPSGSLALDTALGIGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ Q+   T AF+DAEHALD +YA+KLGV+++ LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVALHAIAEVQQQR-TSAFIDAEHALDPVYAQKLGVNIEELLLSQPDTG 119

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDI+V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 120 EQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 179

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K  + + GN+T
Sbjct: 180 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT 239

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASI 291
           ++KVVKNK+A PF+  E DIMYGEGIS  GE+IDLG +  I
Sbjct: 240 KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDI 280


>gi|216263822|ref|ZP_03435816.1| protein RecA [Borrelia afzelii ACA-1]
 gi|215979866|gb|EEC20688.1| protein RecA [Borrelia afzelii ACA-1]
          Length = 365

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/325 (54%), Positives = 254/325 (78%), Gaps = 4/325 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KA+E A  QI++ +GKG+++++G +  + +GI+ +SSGS+ LD ALGIGG+P+GRI+E
Sbjct: 20  KEKAVELARVQIEKTFGKGSLIKMG-ESPVGKGIKSISSGSIVLDEALGIGGYPRGRIIE 78

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+ LGV++  L +SQPDTGE
Sbjct: 79  IFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQPDTGE 138

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI + L+RSG +D+IV+DSVAALTP+ EI+G+MG+S  G+QARLMS+ALRK+T  +S
Sbjct: 139 QALEIAEHLIRSGGIDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKITGILS 198

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKDSITGN 248
           +S   ++FINQ+RM+IG+MFG+PETTTGGNALKFY+S+RL++R+V  +      D + GN
Sbjct: 199 KSNTCIMFINQIRMRIGIMFGNPETTTGGNALKFYASLRLEVRKVEQVTRSGSSDDVIGN 258

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + RVK+VKNK+A PF++VE  I +G+GIS    ++D  +K ++V K+G+W+S    +LGQ
Sbjct: 259 KIRVKIVKNKVAPPFRKVELVIYFGKGISREAGILDAAIKHNLVQKTGSWYSLGDNKLGQ 318

Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333
           GRE+   +L + +E+  +++  LR+
Sbjct: 319 GRESVIEYLGKEVELTNDLDKRLRR 343


>gi|54792188|emb|CAE54410.1| recombination-repair protein [Vibrio cholerae]
 gi|54792190|emb|CAE54411.1| recombination-repair protein [Vibrio cholerae]
 gi|58415405|emb|CAH57117.1| recA protein [Vibrio cholerae]
 gi|58415407|emb|CAH57118.1| recA protein [Vibrio cholerae]
          Length = 260

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/260 (67%), Positives = 220/260 (84%), Gaps = 2/260 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L 
Sbjct: 3   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLE 60

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAV
Sbjct: 61  LIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAV 120

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 121 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 180

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ 
Sbjct: 181 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEA 240

Query: 267 EFDIMYGEGISFFGELIDLG 286
              IMYG+G +  GELIDLG
Sbjct: 241 NTQIMYGQGFNREGELIDLG 260


>gi|301599265|emb|CBW30985.1| recombinase A [Vibrio azureus]
          Length = 258

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/260 (67%), Positives = 219/260 (84%), Gaps = 2/260 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE
Sbjct: 1   KQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVE 58

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGE
Sbjct: 59  IYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGE 118

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ 
Sbjct: 119 QALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLK 178

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR
Sbjct: 179 QSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETR 238

Query: 252 VKVVKNKMASPFKQVEFDIM 271
           +KVVKNK+A+PFK+    IM
Sbjct: 239 IKVVKNKIAAPFKEANTQIM 258


>gi|241896712|emb|CAZ65707.1| recombinase A [Vibrio hippocampi]
          Length = 259

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/261 (67%), Positives = 219/261 (83%), Gaps = 2/261 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 238

Query: 271 MYGEGISFFGELIDLGVKASI 291
           MYG+G +  GELIDLGVK  +
Sbjct: 239 MYGQGFNREGELIDLGVKHKL 259


>gi|257784582|ref|YP_003179799.1| recA protein [Atopobium parvulum DSM 20469]
 gi|257473089|gb|ACV51208.1| recA protein [Atopobium parvulum DSM 20469]
          Length = 362

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/347 (59%), Positives = 270/347 (77%), Gaps = 4/347 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ + + +  ++I++ +G GAIM+LG  G  F+ I+ + +GSL LD ALGIGG P+GRIV
Sbjct: 18  ERDEVISSTTAEIEKKFGAGAIMRLGEGGPAFD-IQAIPTGSLALDAALGIGGVPRGRIV 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+L  +A++Q  GG  AF+DAEHALD  YA ++GVD+ ++LISQPDTG
Sbjct: 77  EIYGPESSGKTTLSLEILAEAQALGGVVAFIDAEHALDPGYAARIGVDIDDVLISQPDTG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D++V+DSVAAL PRAEIEG++G+S  G+QARLMSQALRKL  S+
Sbjct: 137 EQALEICDMLVRSGAIDVVVVDSVAALVPRAEIEGEIGDSSVGLQARLMSQALRKLAGSL 196

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S  + +FINQ+R KIGVMFGSPETT+GG ALKF+S+VR+DIRRV SIK      GN+ 
Sbjct: 197 SKSNTLCIFINQLREKIGVMFGSPETTSGGRALKFFSTVRMDIRRVDSIKVNGENVGNRV 256

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK  EFDIMYG+GIS  G ++D+ V   IV+KSGAWF+++G+RLGQGR
Sbjct: 257 RVKVVKNKVAPPFKVAEFDIMYGQGISKEGSILDMAVDFEIVNKSGAWFTYEGERLGQGR 316

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV--ADSLLQEPAINTKDDAD 355
           E +K FL  N ++ E I+  +R   GLV   DS +  P + T+D A+
Sbjct: 317 EAAKSFLTANPDLMEEIDHKVRVACGLVFDEDSEVGTP-VATEDSAE 362


>gi|326693641|ref|ZP_08230646.1| recombinase A [Leuconostoc argentinum KCTC 3773]
          Length = 381

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/336 (58%), Positives = 252/336 (75%), Gaps = 4/336 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL +I++ +GKG+IM LG        +E   SGS+ LD+ALG+GG+PKGRI+E
Sbjct: 19  RKAALDEALKRIEKNFGKGSIMLLGDNA--LTQVETYPSGSVKLDVALGVGGYPKGRIIE 76

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH +A+ QK GGT A++DAE+ALD  YA  LGV    LL+SQPDTGE
Sbjct: 77  IYGPESSGKTTLALHAVAEVQKAGGTAAYIDAENALDVKYAEALGVKKDELLLSQPDTGE 136

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q LEI D LV+SGAVDIIV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL  +++
Sbjct: 137 QGLEIADALVQSGAVDIIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGTLN 196

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           R+  + +FINQ+R KIGVMFG+PETT GG ALKFYS++RL++RR   IKD   +TGN T+
Sbjct: 197 RTGTVAIFINQIREKIGVMFGNPETTPGGRALKFYSTIRLEVRRSTQIKDGTDVTGNLTK 256

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PFK  E DIMYG+GIS  GE++DLG +  I+ K+GA++ +   ++GQGRE
Sbjct: 257 VKVVKNKVAPPFKVAEVDIMYGKGISQTGEILDLGAEQEIIRKAGAFYYYGDVKVGQGRE 316

Query: 312 NSKIFL--RENIEIAENIESLLRQNAGLVADSLLQE 345
            +K FL   EN  + + I + +R   G+    LL E
Sbjct: 317 KAKEFLDAPENAAMRQEIYAKVRNAFGIGDGELLVE 352


>gi|151337023|gb|ABS00959.1| recombinase A protein [Thermus aquaticus]
          Length = 340

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/326 (56%), Positives = 250/326 (76%), Gaps = 3/326 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+LE AL  I++ +GKGA+M+LG    +   ++V+ +GSLGLD+ALGIGG P+GR+ 
Sbjct: 4   NKRKSLENALKTIEKEFGKGAVMRLGEMPKL--QVDVIPTGSLGLDLALGIGGIPRGRVT 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPES GKTTLAL  IAQ+QK GG  AFVDAEHALD +YA+KLGVD++ LL+SQPDTG
Sbjct: 62  EIFGPESGGKTTLALTIIAQAQKGGGVAAFVDAEHALDPLYAKKLGVDVQELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI ++L RSGAVD+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRKLT+ +
Sbjct: 122 EQALEIVELLARSGAVDVIVVDSVAALVPKAEIEGEMGDQHVGLQARLMSQALRKLTAVL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQ 249
            +S    +FINQ+R K+G M+ +PETT GG ALKFYSSVRLD+R+ G  IK  +   G +
Sbjct: 182 YKSNTAAIFINQIREKVGAMYTNPETTPGGRALKFYSSVRLDVRKSGPPIKAGNEAVGIK 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PF++ E +I +G G+    +L+++ V A +++K+G+WFS+   RLGQG
Sbjct: 242 VKVKVVKNKLAPPFREAELEIYFGRGLDPVMDLVNVAVAAGVIEKAGSWFSYGEHRLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNA 335
           +E +  +LRE  E+ E I + + + A
Sbjct: 302 KEKAAEYLRERPELLEEIRAKVLERA 327


>gi|148377813|ref|YP_001256689.1| recombinase A [Mycoplasma agalactiae PG2]
 gi|148291859|emb|CAL59250.1| RecA protein [Mycoplasma agalactiae PG2]
          Length = 330

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/316 (55%), Positives = 243/316 (76%), Gaps = 1/316 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           ++  L++I R +G+ AIM   +Q SI E +E  SSGS  L+ ALGIGG+PKGRIVEIYGP
Sbjct: 15  IKRTLNEITRKFGQEAIMMF-NQDSIDEQVETFSSGSYLLNSALGIGGYPKGRIVEIYGP 73

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL LH IA+ QK GG  AF+DAEHA+D +YAR LG+DL  L++SQPD+GEQA+E
Sbjct: 74  ESSGKTTLCLHAIAEVQKQGGIAAFIDAEHAIDPLYARNLGIDLNTLILSQPDSGEQAME 133

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D+L +SGAVD+IV+DSVAAL P AE+EG+M +   G+QARLMS+ALRK+T ++ ++K 
Sbjct: 134 IVDILAKSGAVDLIVVDSVAALVPIAELEGEMRDMQVGVQARLMSKALRKITGNLHKNKT 193

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
            ++F+NQ+R KIGVMFG+PETTTGG ALKFY+S+RL++R+  SI +   ITGN+ ++KVV
Sbjct: 194 TVIFVNQIREKIGVMFGNPETTTGGRALKFYASIRLEVRKTTSITEGKDITGNEIKIKVV 253

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK+++P+K    +I++ +GI   GELI+L  +  I DK GAW++++G+ + QG+   K 
Sbjct: 254 KNKLSAPYKSFTTEILFSKGIDATGELIELACEKGIFDKKGAWYAYQGKNITQGKRALKE 313

Query: 316 FLRENIEIAENIESLL 331
           FL  N+E  + IE L+
Sbjct: 314 FLENNLEFKQEIEKLV 329


>gi|215271654|emb|CAR57860.1| recombination-repair protein [Vibrio campbellii]
 gi|215271656|emb|CAR57861.1| recombination-repair protein [Vibrio campbellii]
 gi|215271658|emb|CAR57862.1| recombination-repair protein [Vibrio campbellii]
 gi|215271660|emb|CAR57863.1| recombination-repair protein [Vibrio campbellii]
 gi|215271662|emb|CAR57864.1| recombination-repair protein [Vibrio campbellii]
 gi|215271664|emb|CAR57865.1| recombination-repair protein [Vibrio rotiferianus]
 gi|215271666|emb|CAR57866.1| recombination-repair protein [Vibrio rotiferianus]
 gi|215271668|emb|CAR57867.1| recombination-repair protein [Vibrio rotiferianus]
 gi|215271670|emb|CAR57868.1| recombination-repair protein [Vibrio rotiferianus]
 gi|215271672|emb|CAR57869.1| recombination-repair protein [Vibrio rotiferianus]
          Length = 259

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/261 (67%), Positives = 219/261 (83%), Gaps = 2/261 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 238

Query: 271 MYGEGISFFGELIDLGVKASI 291
           MYG+G +  GELIDLGVK  +
Sbjct: 239 MYGQGFNREGELIDLGVKHKL 259


>gi|111114954|ref|YP_709572.1| recombinase A [Borrelia afzelii PKo]
 gi|122956423|sp|Q0SP32|RECA_BORAP RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|110890228|gb|ABH01396.1| recA protein [Borrelia afzelii PKo]
          Length = 365

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/325 (53%), Positives = 254/325 (78%), Gaps = 4/325 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K +A+E A  QI++ +GKG+++++G +  + +GI+ +SSGS+ LD ALGIGG+P+GRI+E
Sbjct: 20  KEEAVELARVQIEKTFGKGSLIKMG-ESPVGKGIKSISSGSIVLDEALGIGGYPRGRIIE 78

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+ LGV++  L +SQPDTGE
Sbjct: 79  IFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQPDTGE 138

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI + L+RSG +D+IV+DSVAALTP+ EI+G+MG+S  G+QARLMS+ALRK+T  +S
Sbjct: 139 QALEIAEHLIRSGGIDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKITGILS 198

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKDSITGN 248
           +S   ++FINQ+RM+IG+MFG+PETTTGGNALKFY+S+RL++R+V  I      D + GN
Sbjct: 199 KSNTCIMFINQIRMRIGIMFGNPETTTGGNALKFYASLRLEVRKVEQITRSGSSDDVIGN 258

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + RVK+VKNK+A PF++VE  I +G+GIS    ++D  +K +++ K+G+W+S    +LGQ
Sbjct: 259 KIRVKIVKNKVAPPFRKVELVIYFGKGISREAGILDAAIKHNLIQKTGSWYSLGDNKLGQ 318

Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333
           GRE+   +L + +E+  +++  LR+
Sbjct: 319 GRESVIEYLSKEVELTNDLDKRLRK 343


>gi|319936483|ref|ZP_08010899.1| recA [Coprobacillus sp. 29_1]
 gi|319808598|gb|EFW05150.1| recA [Coprobacillus sp. 29_1]
          Length = 345

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/321 (56%), Positives = 258/321 (80%), Gaps = 2/321 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL  A++QI++ +GKG++M+LG + ++   I+V+ +GSL LD ALGIGG+PKGRI+E
Sbjct: 17  KEKALADAITQIEKQFGKGSVMKLGDRVAV--DIDVIPTGSLTLDAALGIGGYPKGRIIE 74

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA+ QK GG  AF+DAEHA+D +YA+ LGV++  L++SQPD+GE
Sbjct: 75  IYGPESSGKTTLTLHAIAEVQKQGGRAAFIDAEHAIDPVYAKNLGVNVDELILSQPDSGE 134

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q L I + LV+S A+D++V+DSVAAL P+ E++G+M ++  G+QARLMS+A+R+L+  ++
Sbjct: 135 QGLAIAETLVKSDAIDLVVVDSVAALVPQVELDGEMSDNSVGLQARLMSKAMRRLSGLMN 194

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++ C ++FINQ+R KIGVM+G+PETTTGG ALKFYSSVR++IR+  +IK+   + GN+  
Sbjct: 195 KTSCTIIFINQLREKIGVMYGNPETTTGGRALKFYSSVRIEIRKSEAIKNGSEVVGNKVN 254

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF+   FDI+YG+GI+  GE+IDL V   I+DKSGAW++++G+++GQGRE
Sbjct: 255 VKVVKNKVAPPFRNTSFDIVYGKGIARDGEVIDLAVDNDIIDKSGAWYAYQGEKIGQGRE 314

Query: 312 NSKIFLRENIEIAENIESLLR 332
           N KIFL E+ EI   IE+ ++
Sbjct: 315 NVKIFLAEHPEIMTEIENKVK 335


>gi|56181893|gb|AAV83927.1| RecA [Burkholderia cepacia]
          Length = 240

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/239 (74%), Positives = 211/239 (88%), Gaps = 1/239 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRE 238


>gi|34763249|ref|ZP_00144210.1| RecA protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|27887076|gb|EAA24186.1| RecA protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
          Length = 377

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/341 (54%), Positives = 255/341 (74%), Gaps = 10/341 (2%)

Query: 1   MDYRKEMNIVD--------KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGS 52
           M  +K+ NI D        K KA++ A++ I + +G G IM+LG + S+   +E + +GS
Sbjct: 1   MAAKKDKNIPDSKITDKEGKEKAVKDAMASITKDFGAGLIMKLGEKSSM--NVESIPTGS 58

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           + LDIALGIGG PKGRI+E+YG ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA
Sbjct: 59  INLDIALGIGGVPKGRIIEVYGAESSGKTTLALHIIAEAQKQGGTVAFIDAEHALDPVYA 118

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           + LGVD+  LLISQPD GEQALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M +   
Sbjct: 119 KALGVDIDELLISQPDYGEQALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQM 178

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QARLMS+ LRKLT ++++ K  ++FINQ+R KIGV +G   TTTGG ALKFYSSVR++
Sbjct: 179 GLQARLMSKGLRKLTGNLNKYKTTMIFINQIREKIGVSYGPTTTTTGGKALKFYSSVRME 238

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           ++++G++K  D   G++  VKV KNK+A PFK+  F+I+YG+GIS  GE+ID  V   ++
Sbjct: 239 VKKMGTVKQGDDPIGSEVIVKVTKNKVAPPFKEAAFEILYGKGISKIGEIIDAAVARDVI 298

Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
            K+G+WFSF+ Q +GQG+E  +  L  N+E+   +E+ L++
Sbjct: 299 VKAGSWFSFRDQSIGQGKEKVRAELETNLELLAQVEADLKE 339


>gi|21905551|gb|AAM80407.1| putative recombination protein [Streptococcus pyogenes MGAS315]
          Length = 326

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/289 (60%), Positives = 230/289 (79%), Gaps = 4/289 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHAL
Sbjct: 1   MSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+
Sbjct: 61  DPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDI 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+
Sbjct: 121 GDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYA 180

Query: 228 SVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           SVRLD+R    IK     KDS  G +T++KVVKNK+A PFK  E +IMYGEGIS  GEL+
Sbjct: 181 SVRLDVRGTTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELV 240

Query: 284 DLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
            +     I+ K+GAWFS+ G+++GQG EN+K +L ++ ++ + I+  +R
Sbjct: 241 KIASDLDIIQKAGAWFSYNGEKIGQGSENAKRYLADHPQLFDEIDRKVR 289


>gi|262066332|ref|ZP_06025944.1| protein RecA [Fusobacterium periodonticum ATCC 33693]
 gi|291379896|gb|EFE87414.1| protein RecA [Fusobacterium periodonticum ATCC 33693]
          Length = 379

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/322 (57%), Positives = 248/322 (77%), Gaps = 2/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KA+  A++ I + +G G IM+LG + S+   +E + +GS+ LDIALGIGG PKGRI+E
Sbjct: 20  KQKAVNDAMAAITKGFGAGLIMKLGEKSSM--NVESIPTGSINLDIALGIGGVPKGRIIE 77

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYG ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGVD+  LLISQPD GE
Sbjct: 78  IYGAESSGKTTLALHVIAEAQKQGGTVAFIDAEHALDPVYAKALGVDIDELLISQPDYGE 137

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M +   G+QARLMS+ LRKLT +++
Sbjct: 138 QALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQMGLQARLMSKGLRKLTGNLN 197

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           + K  ++FINQ+R KIGV +G   TTTGG ALKFY+SVRL+++++G++K  D   G++  
Sbjct: 198 KYKTTMIFINQIREKIGVTYGPSTTTTGGKALKFYASVRLEVKKMGTVKQGDDPIGSEVV 257

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV KNK+A PFK+  F+I+YG+GIS  GE+ID  V   I+ K+G+WFSF+ Q +GQG+E
Sbjct: 258 VKVTKNKVAPPFKEAAFEILYGKGISRVGEIIDAAVARDIIVKAGSWFSFRDQSIGQGKE 317

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
             +I L  N E+ E +E+ L++
Sbjct: 318 KVRIELESNPELLEQVEADLKE 339


>gi|54792170|emb|CAE54401.1| recombination-repair protein [Vibrio harveyi]
 gi|54792463|emb|CAE45611.1| recombination-repair protein [Vibrio campbellii]
 gi|58415391|emb|CAH57110.1| recA protein [Vibrio campbellii]
 gi|58415501|emb|CAH57165.1| recA protein [Vibrio harveyi]
          Length = 256

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 174/258 (67%), Positives = 218/258 (84%), Gaps = 2/258 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEA 238

Query: 267 EFDIMYGEGISFFGELID 284
              IMYG+G +  GELID
Sbjct: 239 NTQIMYGQGFNREGELID 256


>gi|119358061|ref|YP_912705.1| recombinase A [Chlorobium phaeobacteroides DSM 266]
 gi|119355410|gb|ABL66281.1| recA protein [Chlorobium phaeobacteroides DSM 266]
          Length = 350

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/322 (62%), Positives = 257/322 (79%), Gaps = 3/322 (0%)

Query: 8   NIVD--KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           ++VD  K K L  A+  I++ +GKGAIM+LG   +    ++ +S+GS+ LD ALG+GG P
Sbjct: 11  DLVDPAKLKQLNLAVDAIEKQFGKGAIMRLGDDSAGMH-VQAISTGSMTLDFALGVGGLP 69

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GR+ EIYGPESSGKTTLALH IA++QK GG  A VDAEHA D  YARKLGVD+  LLIS
Sbjct: 70  RGRVTEIYGPESSGKTTLALHVIAEAQKEGGIAAIVDAEHAFDPTYARKLGVDINALLIS 129

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QP++GEQAL I + LVRSGAVD++V+DSVAAL P+AE+EG+MG+S+ G+QARLMSQALRK
Sbjct: 130 QPESGEQALTIVETLVRSGAVDVVVVDSVAALVPQAELEGEMGDSVMGLQARLMSQALRK 189

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT +IS+S  + +FINQ+R KIGVM+GSPETTTGG ALKFY+SVRLDIR++  IKD D I
Sbjct: 190 LTGAISKSSTVCIFINQLRDKIGVMYGSPETTTGGKALKFYASVRLDIRKIAQIKDGDEI 249

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            G++T+VKVVKNK+A PFK  EFDI+YGEGIS  GELIDL V+ ++V K+G+WFSF  ++
Sbjct: 250 VGSRTKVKVVKNKVAPPFKTAEFDILYGEGISSMGELIDLAVEFAVVKKAGSWFSFGQEK 309

Query: 306 LGQGRENSKIFLRENIEIAENI 327
           LGQGRE  K  LRE+  + + I
Sbjct: 310 LGQGREAVKKALREDHALFQQI 331


>gi|6225925|sp|O86382|RECA_NEIEG RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|3425917|emb|CAA11609.1| recA [Neisseria elongata]
          Length = 237

 Score =  371 bits (953), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/237 (74%), Positives = 207/237 (87%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKTTL L TIAQ QK GG CAF+DAE+A D
Sbjct: 1   STGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLETIAQCQKNGGVCAFIDAENAFD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYARKLGV ++ L++SQPDTGEQALEI DMLVRSG VD++VIDSVAAL P+AEIEGDMG
Sbjct: 61  PIYARKLGVKVEELMVSQPDTGEQALEICDMLVRSGGVDMVVIDSVAALVPKAEIEGDMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRKLT  I ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+S
Sbjct: 121 DSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           VRLDIRR   IK  D + GN+T+VKV+KNK+A PF+Q EFDI+YGEG+S+ GELIDL
Sbjct: 181 VRLDIRRGLQIKKGDDVIGNETKVKVIKNKVAPPFRQAEFDILYGEGVSWEGELIDL 237


>gi|162286671|gb|ABX83446.1| RecA [Acidovorax facilis]
          Length = 243

 Score =  371 bits (953), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/243 (76%), Positives = 216/243 (88%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGTCAFV
Sbjct: 1   IEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKQGGTCAFV 60

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           DAEHALD  YA+KLGV L +LLISQPDTGEQALEI D LVRSGAVD+IVIDSVAALTP+A
Sbjct: 61  DAEHALDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVIDSVAALTPKA 120

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
           EIEG+MG++LPG+QARLMSQALRKLT++I ++ C+++FINQ+RMKIGVMFGSPETTTGGN
Sbjct: 121 EIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGN 180

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE 281
           ALKFY+SVRLDIRR G+IK  D   GN+T+VKVVKNK++ PFK  EFDI++GEGIS  GE
Sbjct: 181 ALKFYASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGE 240

Query: 282 LID 284
           +ID
Sbjct: 241 IID 243


>gi|219685400|ref|ZP_03540219.1| protein RecA [Borrelia garinii Far04]
 gi|219673173|gb|EED30193.1| protein RecA [Borrelia garinii Far04]
          Length = 351

 Score =  371 bits (953), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 174/327 (53%), Positives = 255/327 (77%), Gaps = 4/327 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           V+K +A+E A  QI++ +GKG+++++G +  + +GI+ +SSGS+ LD ALGIGG+P+GRI
Sbjct: 7   VNKEEAIELARVQIEKTFGKGSLIKMG-ESPVGKGIKSISSGSIVLDEALGIGGYPRGRI 65

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+ LGV++  L +SQPDT
Sbjct: 66  IEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVSELWLSQPDT 125

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + L+RSG +D+IV+DSVAALTP+ EI+G+MG+S  G+QARLMS+ALRK+T  
Sbjct: 126 GEQALEIAEHLIRSGGIDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKITGI 185

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKDSIT 246
           +S+S   ++FINQ+RM+IG+MFG+PETTTGGNALKFY+S+RL++R++  I      D + 
Sbjct: 186 LSKSNTCIMFINQIRMRIGIMFGNPETTTGGNALKFYASLRLEVRKIEQITRSGSSDDVI 245

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ RVK+VKNK+A PF++VE  I +G+GIS    ++D  +K +++ K+G+W+S    +L
Sbjct: 246 GNKIRVKIVKNKVAPPFRKVELVIYFGKGISREAGILDAALKHNLIQKTGSWYSLGDNKL 305

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333
           GQGRE+   +  + +E+  +++  LR+
Sbjct: 306 GQGRESVIEYFNKEVELVNDLDKRLRK 332


>gi|162286679|gb|ABX83450.1| RecA [Verminephrobacter eiseniae]
          Length = 239

 Score =  371 bits (953), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/238 (77%), Positives = 214/238 (89%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTLAL  IA+ QK GGTCAFVDAEHA
Sbjct: 2   VVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLALQVIAEMQKQGGTCAFVDAEHA 61

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YA+KLGV L +LLISQPDTGEQALEI D LVRSGAVD+IV+DSVAALTP+AEIEGD
Sbjct: 62  LDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAALTPKAEIEGD 121

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG++LPG+QARLMSQALRKLT++I ++ C++VFINQ+RMKIGVMFGSPETTTGGNALKFY
Sbjct: 122 MGDALPGLQARLMSQALRKLTATIKKTNCMVVFINQIRMKIGVMFGSPETTTGGNALKFY 181

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           +SVRLDIRR G+IK  D   GN+T+VKVVKNK++ PFK  EFDI++GEGIS  GE+ID
Sbjct: 182 ASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIID 239


>gi|54792499|emb|CAE45629.1| recombination-repair protein [Vibrio vulnificus]
 gi|58415676|emb|CAH57252.1| recA protein [Vibrio vulnificus]
          Length = 256

 Score =  371 bits (953), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 174/258 (67%), Positives = 218/258 (84%), Gaps = 2/258 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAV
Sbjct: 59  LIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDQLLVSQPDTGEQALEICDALARSGAV 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEA 238

Query: 267 EFDIMYGEGISFFGELID 284
              IMYG+G +  GELID
Sbjct: 239 NTQIMYGQGFNREGELID 256


>gi|169335003|ref|ZP_02862196.1| hypothetical protein ANASTE_01409 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257741|gb|EDS71707.1| hypothetical protein ANASTE_01409 [Anaerofustis stercorihominis DSM
           17244]
          Length = 353

 Score =  371 bits (953), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/321 (61%), Positives = 259/321 (80%), Gaps = 2/321 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KALE A+  I+  +GKGA+M+LG + ++   I+ +S+ S+ LD ALG+GG P+GRI+
Sbjct: 12  DKEKALELAMRNIESNFGKGAVMKLGDKPAVT--IDAISTSSISLDAALGVGGLPRGRII 69

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A++QK GG  AF+DAEHALD IYA  LGV++  L++SQPDTG
Sbjct: 70  EVYGPESSGKTTVALHVVAEAQKAGGVAAFIDAEHALDPIYAEALGVNIDELIVSQPDTG 129

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ LVRS AVD++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL  +I
Sbjct: 130 EQALEITEALVRSAAVDVVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLAGAI 189

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++S    VFINQ+R K+G+MFG+PE T GG ALKFYSSVRL++RR+ SIK+   I GN+T
Sbjct: 190 NKSNTTAVFINQLREKVGIMFGNPEVTPGGRALKFYSSVRLEVRRIDSIKNGQEIIGNRT 249

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PFK  EFDIMYG+GIS  G+++D+  K  I+ K+GAW+S+  +++GQGR
Sbjct: 250 KVKVVKNKVAPPFKIAEFDIMYGKGISREGDIVDMAAKYGIIKKAGAWYSYNDEKIGQGR 309

Query: 311 ENSKIFLRENIEIAENIESLL 331
           + +K FL +N EIAE+IE L+
Sbjct: 310 DKAKQFLADNPEIAEHIEKLV 330


>gi|304564617|gb|ADM45172.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 264

 Score =  371 bits (953), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/263 (66%), Positives = 224/263 (85%), Gaps = 2/263 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           +R +GKG+IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTL
Sbjct: 1   ERQFGKGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTL 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALH IA++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRS
Sbjct: 59  ALHMIAEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVDIIVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+
Sbjct: 119 GAVDIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQL 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           R K+GVMFG+PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PF
Sbjct: 179 REKVGVMFGNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLG 286
           KQ EFDIMYGEGIS  G ++D+G
Sbjct: 239 KQAEFDIMYGEGISREGSILDIG 261


>gi|54792459|emb|CAE45609.1| recombination-repair protein [Vibrio natriegens]
 gi|58415576|emb|CAH57202.1| recA protein [Vibrio natriegens]
          Length = 256

 Score =  371 bits (953), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 172/258 (66%), Positives = 218/258 (84%), Gaps = 2/258 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEA 238

Query: 267 EFDIMYGEGISFFGELID 284
              IMYG+G +  GEL+D
Sbjct: 239 NTQIMYGQGFNREGELVD 256


>gi|225551986|ref|ZP_03772926.1| protein RecA [Borrelia sp. SV1]
 gi|225370984|gb|EEH00414.1| protein RecA [Borrelia sp. SV1]
          Length = 365

 Score =  371 bits (952), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/325 (54%), Positives = 253/325 (77%), Gaps = 4/325 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K +A+E A  QI++ +GKG+++++G +  + +GI+ +SSGS+ LD ALGIGG+P+GRI+E
Sbjct: 20  KEEAIELARVQIEKAFGKGSLIKMG-ESPVGQGIKSMSSGSIILDEALGIGGYPRGRIIE 78

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+ LGV++  L +SQPDTGE
Sbjct: 79  IFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQPDTGE 138

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI + L+RSG VD+IV+DSVAALTP+ EI+G+MG+S  G+QARLMS+ALRK+T  +S
Sbjct: 139 QALEIAEHLIRSGGVDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKITGILS 198

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKDSITGN 248
           +S   ++FINQ+RMKIGVMFG+PETTTGGNALKFYSS+RL++R++  +      D + GN
Sbjct: 199 KSNTCIMFINQIRMKIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTRSGSSDDVIGN 258

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + RVK+VKNK+A PF++VE  I +G+GI     ++D  +K +++ K+G+W+S    +LGQ
Sbjct: 259 KIRVKIVKNKVAPPFRKVELIIYFGKGILREAGILDAAIKHNLIQKTGSWYSLGDNKLGQ 318

Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333
           GRE+    L + +E+A +++  LR+
Sbjct: 319 GRESVIEHLSKEVELANDLDKRLRK 343


>gi|157783872|gb|ABV72701.1| recombinant DNA repair protein [Vibrio mangrovi]
 gi|163962989|gb|ABY50537.1| recombinant DNA repair protein [Vibrio sp. MSSRF39]
          Length = 258

 Score =  371 bits (952), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 174/260 (66%), Positives = 217/260 (83%), Gaps = 2/260 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG   ++   +E + +GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q
Sbjct: 1   MRLGDNRAM--DVETIPTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAAAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           + G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+D
Sbjct: 59  REGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVD 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG
Sbjct: 119 SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFK+    IMY
Sbjct: 179 NPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMY 238

Query: 273 GEGISFFGELIDLGVKASIV 292
           G+G +  GEL+DLGVK  +V
Sbjct: 239 GQGFNREGELVDLGVKHKLV 258


>gi|255520430|ref|ZP_05387667.1| recombinase A [Listeria monocytogenes FSL J1-175]
          Length = 277

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/275 (64%), Positives = 223/275 (81%), Gaps = 2/275 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+
Sbjct: 3   DRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I
Sbjct: 121 EQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR   +K    + GN+T
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           ++KVVKNK+A PF+  E DIMYGEGIS  GEL+D+
Sbjct: 241 KIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDM 275


>gi|6694805|gb|AAF25390.1|AF214743_1 RecA protein [Arthrobacter sp. 'SMCC G991']
          Length = 269

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/262 (66%), Positives = 217/262 (82%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAE
Sbjct: 8   IEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAE 67

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA KLGVD   LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEIE
Sbjct: 68  HALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIE 127

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG+S  G+QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALK
Sbjct: 128 GDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALK 187

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVR+D+RR+ ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS  G +ID
Sbjct: 188 FYASVRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQGISREGGIID 247

Query: 285 LGVKASIVDKSGAWFSFKGQRL 306
           +GV+  I+ KSG+WF++ G +L
Sbjct: 248 MGVEHGIIKKSGSWFTYDGDQL 269


>gi|47457168|emb|CAE54391.1| recombination-repair protein [Photobacterium iliopiscarium]
 gi|58415355|emb|CAH57092.1| recA protein [Photobacterium iliopiscarium]
          Length = 246

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/240 (72%), Positives = 207/240 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I+ +QK G TCAF+DAE
Sbjct: 7   IETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVISAAQKQGKTCAFIDAE 66

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE
Sbjct: 67  HALDPIYAQKLGVDINELLVSQPDTGEQALEIVDALARSGAVDVIVVDSVAALTPKAEIE 126

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 127 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 186

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GELID
Sbjct: 187 FYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGQGFNRNGELID 246


>gi|6225926|sp|O86403|RECA_NEIPE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|6225928|sp|O86414|RECA_NEISU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|3421278|emb|CAA11607.1| recA [Neisseria perflava]
 gi|3421316|emb|CAA11605.1| recA [Neisseria subflava]
          Length = 237

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/237 (72%), Positives = 205/237 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLG+D+ALG+GG P+GR+VEI+GPESSGKTTL L  IAQ QK GG CAF+DAEHA D
Sbjct: 1   STGSLGVDLALGVGGLPRGRVVEIFGPESSGKTTLCLEAIAQCQKNGGICAFIDAEHAFD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYARKLGV ++ L +SQPDTGEQALEI D LVRSG +D++V+DSVAAL P+AEIEG+MG
Sbjct: 61  PIYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRKLT  I R+  ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+S
Sbjct: 121 DSHVGLQARLMSQALRKLTGHIKRTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           VRLDIRR G IK  D + GN+T+VKV+KNK+A PF+Q EFDI+YGEGIS+ GELIDL
Sbjct: 181 VRLDIRRTGQIKKGDDVIGNETKVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDL 237


>gi|3421168|emb|CAA11604.1| recA [Neisseria flava]
          Length = 237

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 172/237 (72%), Positives = 205/237 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLG+D+ALG+GG P+GR+VEI+GPESSGKTTL L  IAQ QK GG CAF+DAEHA D
Sbjct: 1   STGSLGVDLALGVGGLPRGRVVEIFGPESSGKTTLCLEAIAQCQKNGGICAFIDAEHAFD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGV ++ L +SQPDTGEQALEI D LVRSG VD++V+DSVAAL P+AEIEG+MG
Sbjct: 61  PVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGVDMVVVDSVAALVPKAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRKLT  I R+  ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+S
Sbjct: 121 DSHVGLQARLMSQALRKLTGHIKRTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           VRLDIRR G IK  D + GN+T+VKV+KNK+A PF+Q EFDI+YGEG+S+ GELIDL
Sbjct: 181 VRLDIRRTGQIKKGDDVIGNETKVKVIKNKVAPPFRQAEFDILYGEGVSWEGELIDL 237


>gi|194303169|ref|YP_002014584.1| gp118 [Mycobacterium phage Kostya]
 gi|194153217|gb|ACF34283.1| gp118 [Mycobacterium phage Kostya]
          Length = 320

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 172/319 (53%), Positives = 244/319 (76%), Gaps = 4/319 (1%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           +L+ AL+++ + +G GA M LG++    + ++ + +GS+ LD ALGIGG+P+GR+VEIYG
Sbjct: 2   SLKDALAEVDKRFGAGAAMTLGAKP---QTVDTIPTGSIALDAALGIGGYPRGRVVEIYG 58

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGK+TL LH +A +QK GG  A++DAEH+LD  YA  LGVD+ NL++ QPDTGEQAL
Sbjct: 59  PESSGKSTLCLHAVANAQKAGGNAAYIDAEHSLDPEYAAALGVDVDNLVVVQPDTGEQAL 118

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EI D+LV+SG V IIV+DSVAAL PRAE+EGD+G+S  G+ ARLMSQA+RKLT +I+ + 
Sbjct: 119 EIVDLLVKSGEVSIIVVDSVAALVPRAELEGDIGDSHVGLHARLMSQAMRKLTGTIASTN 178

Query: 195 CILVFINQMRMKIG-VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            + +++NQ+R KIG V +G  ETTTGG AL+FY+SVR+D+RR+ + K+ D   GN+TRVK
Sbjct: 179 TLTLWVNQLREKIGNVGYGPNETTTGGKALRFYASVRMDVRRIATEKEGDEAVGNRTRVK 238

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VVKNK+A P +Q EF I+YGEGIS   EL+D+ V   ++ KSGAWF +  + +GQG+  +
Sbjct: 239 VVKNKLAPPHRQAEFSIVYGEGISREAELLDMAVSRGLIKKSGAWFKYGDKNIGQGKPKT 298

Query: 314 KIFLRENIEIAENIESLLR 332
             +L++N ++A +IE  ++
Sbjct: 299 VQWLKDNPDVAASIEQTIK 317


>gi|3425909|emb|CAA11600.1| recA [Neisseria cinerea]
 gi|3425911|emb|CAA11601.1| recA [Neisseria cinerea]
          Length = 237

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 172/237 (72%), Positives = 204/237 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKTTL L  +AQ QK GG CAF+DAEHA D
Sbjct: 1   STGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVAQCQKDGGVCAFIDAEHAFD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGV ++ L +SQPDTGEQALEI D LVRSG VD++V+DSVAAL P+AEIEGDMG
Sbjct: 61  PVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGVDMVVVDSVAALVPKAEIEGDMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+ ARLMSQALRKLT  I ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSS
Sbjct: 121 DSHVGLHARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           VRLDIRR G IK  + + GN+TRVKV+KNK+A PF+Q EFDI+YGEG+S+ GELID+
Sbjct: 181 VRLDIRRAGQIKKGEEVIGNETRVKVIKNKVAPPFRQAEFDILYGEGVSWEGELIDI 237


>gi|237741571|ref|ZP_04572052.1| RecA protein [Fusobacterium sp. 4_1_13]
 gi|229429219|gb|EEO39431.1| RecA protein [Fusobacterium sp. 4_1_13]
          Length = 377

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/341 (54%), Positives = 254/341 (74%), Gaps = 10/341 (2%)

Query: 1   MDYRKEMNIVD--------KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGS 52
           M  +K+ NI D        K KA++ A++ I + +G G IM+LG + S+   +E + +GS
Sbjct: 1   MAAKKDKNIPDSKITDKEGKEKAVKDAMASITKDFGAGLIMKLGEKSSM--NVESIPTGS 58

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           + LDIALGIGG PKGRI+E+YG ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA
Sbjct: 59  INLDIALGIGGVPKGRIIEVYGAESSGKTTLALHIIAEAQKQGGTVAFIDAEHALDPVYA 118

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           + LGVD+  LLISQPD GEQALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M +   
Sbjct: 119 KALGVDIDELLISQPDYGEQALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQM 178

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QARLMS+ LRKLT ++++ K  ++FINQ+R KIGV +G   TTTGG ALKFYSSVR++
Sbjct: 179 GLQARLMSKGLRKLTGNLNKYKTTMIFINQIREKIGVSYGPTTTTTGGKALKFYSSVRME 238

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           ++++G++K  D   G++  VKV KNK+A PFK+  F+I+YG+GIS  GE+ID  V   ++
Sbjct: 239 VKKMGTVKQGDDPIGSEVIVKVTKNKVAPPFKEAAFEILYGKGISKIGEIIDAAVARDVI 298

Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
            K+G+WFSF+ Q +GQG+E  +  L  N E+   +E+ L++
Sbjct: 299 VKAGSWFSFRDQSIGQGKEKVRAELETNPELLAQVEADLKE 339


>gi|290795125|gb|ADD64578.1| RecA recombinase [Vibrio ordalii]
          Length = 254

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/256 (67%), Positives = 217/256 (84%), Gaps = 2/256 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSGA+D
Sbjct: 59  IAAAQRVGKTCAFIDAEHALDPIYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAID 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VIVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ +
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAD 238

Query: 268 FDIMYGEGISFFGELI 283
             I+YG+G +  GEL+
Sbjct: 239 TQILYGQGFNREGELV 254


>gi|257812091|gb|ACV69913.1| RecA [Burkholderia cepacia]
          Length = 233

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/233 (74%), Positives = 206/233 (88%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LL
Sbjct: 1   LPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELL 60

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           ISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQAL
Sbjct: 61  ISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQAL 120

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D
Sbjct: 121 RKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKND 180

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
            + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+G
Sbjct: 181 EVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAG 233


>gi|169248054|gb|ACA51810.1| RecA [Aliivibrio fischeri]
          Length = 244

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/244 (70%), Positives = 210/244 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD
Sbjct: 1   STGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD++VIDSVAALTP+AEIEG+MG
Sbjct: 61  PVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMVIDSVAALTPKAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+S
Sbjct: 121 DSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           VRLDIRR G++KD D + GN+TR+KVVKNK+A+PFKQ E  IMYG+G +  GELIDLGVK
Sbjct: 181 VRLDIRRTGAVKDGDEVVGNETRIKVVKNKIAAPFKQAETQIMYGQGFNREGELIDLGVK 240

Query: 289 ASIV 292
             +V
Sbjct: 241 HKLV 244


>gi|54792501|emb|CAE45630.1| recombination-repair protein [Vibrio furnissii]
          Length = 256

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/258 (67%), Positives = 217/258 (84%), Gaps = 2/258 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            I+ +Q+ G TCAF+DAEHALD +YAR+LGV +  LL+SQPDTGEQALEI D L RSGAV
Sbjct: 59  LISAAQREGKTCAFIDAEHALDPVYARRLGVKIDELLVSQPDTGEQALEICDALARSGAV 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFK+ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKEA 238

Query: 267 EFDIMYGEGISFFGELID 284
              IMYG+G +  GELI+
Sbjct: 239 NTQIMYGQGFNREGELIE 256


>gi|295098974|emb|CBK88063.1| RecA protein [Eubacterium cylindroides T2-87]
          Length = 334

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/321 (57%), Positives = 252/321 (78%), Gaps = 2/321 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K K LE  L++I+R YGKG+IM+LG + ++   +E + SGSL LD ALGIGG+PKGRI+E
Sbjct: 7   KDKLLEDVLTEIEREYGKGSIMKLGDRAAV--DVEPIPSGSLLLDQALGIGGYPKGRIIE 64

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPESSGKTTLALH IAQ QK GG  AF+DAE+A+D +YAR LGVD+  L++SQPD+GE
Sbjct: 65  IFGPESSGKTTLALHAIAQVQKKGGRAAFIDAENAIDPVYARNLGVDIDELILSQPDSGE 124

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q L I  ML+ SGAVD++V+DSVAAL P+AE++G+MG+   G QAR+MS+A+RKL   ++
Sbjct: 125 QGLNIMLMLIDSGAVDLVVVDSVAALVPQAELDGEMGDLQVGSQARMMSKAMRKLAGLMN 184

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
            ++C  +FINQ+R K+GV++G+PETT GG ALKFYSSVR+DIR+  +IK+   I GN+ +
Sbjct: 185 HNECTAIFINQLREKVGVVYGNPETTPGGRALKFYSSVRIDIRKADAIKNGTDIVGNKVK 244

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PFK    +IMYGEGIS+  ELIDL V A+I+ K+GAWFS++G+++GQG+E
Sbjct: 245 VKVVKNKVAPPFKSAVLEIMYGEGISYVSELIDLCVDANIIKKAGAWFSYEGEKIGQGKE 304

Query: 312 NSKIFLRENIEIAENIESLLR 332
            +K +++ N +    +E  L+
Sbjct: 305 AAKQYIKNNPDFMSMLEEKLK 325


>gi|3425913|emb|CAA11602.1| recA [Neisseria cinerea]
          Length = 237

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 172/237 (72%), Positives = 204/237 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKTTL L  +AQ QK GG CAF+DAEHA D
Sbjct: 1   STGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVAQCQKDGGVCAFIDAEHAFD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGV ++ L +SQPDTGEQALEI D LVRSG VD++V+DSVAAL P+AEIEGDMG
Sbjct: 61  PVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGVDMVVVDSVAALVPKAEIEGDMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+ ARLMSQALRKLT  I ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSS
Sbjct: 121 DSHVGLHARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           VRLDIRR G IK  + + GN+TRVKV+KNK+A PF+Q EFDI+YGEG+S+ GELID+
Sbjct: 181 VRLDIRRTGQIKKGEEVIGNETRVKVIKNKVAPPFRQAEFDILYGEGVSWEGELIDI 237


>gi|179185349|gb|ACB78179.1| RecA [Vibrio gallicus]
          Length = 251

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/253 (69%), Positives = 215/253 (84%), Gaps = 2/253 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LD+ALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNKTM--DVETISTGSLSLDVALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAFVDAEHALD IYA+KLGVD++ LL+SQPDTGEQALEI D L RSGAVD++V
Sbjct: 59  AQREGKTCAFVDAEHALDPIYAQKLGVDIEQLLVSQPDTGEQALEICDALARSGAVDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IKD D I GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEIVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELI 283
           MYG+G +  GELI
Sbjct: 239 MYGKGFNREGELI 251


>gi|215271700|emb|CAR57883.1| recombination-repair protein [Vibrio cholerae]
          Length = 262

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/262 (66%), Positives = 220/262 (83%), Gaps = 2/262 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAV
Sbjct: 59  LIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAV 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEA 238

Query: 267 EFDIMYGEGISFFGELIDLGVK 288
              I  G+G +  GELIDLGVK
Sbjct: 239 NTQIRNGQGFNREGELIDLGVK 260


>gi|304564403|gb|ADM45065.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 264

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/265 (66%), Positives = 223/265 (84%), Gaps = 2/265 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH
Sbjct: 2   FGKGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAV
Sbjct: 60  MIAEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           DIIVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K
Sbjct: 120 DIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           +GVMFG+PETT GG ALKFY+++RLD+R+V +IK  + I G++TRVKVVKNK+A PFKQ 
Sbjct: 180 VGVMFGNPETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASI 291
           EFDIMYGEGIS  G ++D+G    I
Sbjct: 240 EFDIMYGEGISREGSILDIGASIDI 264


>gi|289524812|emb|CBJ94462.1| recA protein [Vibrio sp. Rd 14.14]
          Length = 241

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 169/241 (70%), Positives = 208/241 (86%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P GRIVE+YGPESSGKTTL L  IA +QK G TCAF+DAEHALD IYA+KLGVD+  LL
Sbjct: 1   LPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFIDAEHALDPIYAQKLGVDIDALL 60

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+
Sbjct: 61  VSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAM 120

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D
Sbjct: 121 RKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGD 180

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +V+K+GAW+S+ G
Sbjct: 181 EVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKNKLVEKAGAWYSYNG 240

Query: 304 Q 304
           +
Sbjct: 241 E 241


>gi|325109244|ref|YP_004270312.1| RecA protein [Planctomyces brasiliensis DSM 5305]
 gi|324969512|gb|ADY60290.1| RecA protein [Planctomyces brasiliensis DSM 5305]
          Length = 357

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/326 (53%), Positives = 245/326 (75%), Gaps = 2/326 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           K L+ AL QI++ +GKG+IM+L       + +  + +G+L LD+ALG  GFP+GRI+E++
Sbjct: 18  KVLDNALGQIEKAFGKGSIMRLSDNAD--DAVPGIPTGALSLDMALGGAGFPRGRIIELF 75

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTLALH IA +Q+ GG  A VDAEHALD  +AR+LGV+L+ LL+SQP  GE+ 
Sbjct: 76  GPESSGKTTLALHAIANAQRQGGVAAIVDAEHALDPSWARRLGVNLEELLVSQPSYGEEG 135

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           L+I +ML+RS +VDIIV+DSVAAL P+AE++G++G++  G+QAR+MSQA+RKLT  I+++
Sbjct: 136 LQIAEMLIRSNSVDIIVVDSVAALVPKAELDGEIGDTHVGLQARMMSQAMRKLTGVIAKA 195

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
           K  ++FINQ+R KIGVMFGSPETT GG ALKFYSS R+D+RR+ S+K+ D + G + + K
Sbjct: 196 KTTVIFINQIREKIGVMFGSPETTPGGRALKFYSSCRVDVRRISSLKEGDEVIGIRMKAK 255

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           +VKNK+A PF+  EFD+    GIS   +++D+ V   +VD+SG+WFS+   RLGQGRE +
Sbjct: 256 IVKNKVAPPFRVAEFDMYSTCGISLEADVLDMAVADRVVDRSGSWFSYGETRLGQGRERA 315

Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339
           + FL EN E+   ++  + +  G  A
Sbjct: 316 RQFLLENPELTRELQQKVMEKRGFAA 341


>gi|290795123|gb|ADD64577.1| RecA recombinase [Vibrio sp. FAL5133]
          Length = 243

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/241 (71%), Positives = 208/241 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +QK G TCAFVDAE
Sbjct: 3   VETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIE
Sbjct: 63  HALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 123 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALK 182

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GELID
Sbjct: 183 FYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELID 242

Query: 285 L 285
           L
Sbjct: 243 L 243


>gi|149917443|ref|ZP_01905941.1| recombination repairing protein [Plesiocystis pacifica SIR-1]
 gi|149821780|gb|EDM81176.1| recombination repairing protein [Plesiocystis pacifica SIR-1]
          Length = 365

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/307 (61%), Positives = 230/307 (74%), Gaps = 5/307 (1%)

Query: 27  YGKGAIMQLGSQGSIFEG--IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           +GKGAIM LG  G   EG   + V +GSL LD ALGIGG P GRIVEIYGPESSGKTTL 
Sbjct: 42  FGKGAIMALG--GDTGEGPRYDAVPTGSLALDEALGIGGLPLGRIVEIYGPESSGKTTLT 99

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA++Q+ G  CAF+DAEHALD  YA+ LGVD   LL+SQPD GEQALEI D L R+G
Sbjct: 100 LHLIAEAQRRGLVCAFLDAEHALDVQYAQALGVDPDELLVSQPDCGEQALEIADSLARTG 159

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           AV +IVIDSVAAL P+AE+EGDMG+   G+QARLMSQA+RKL+   +++  ++VFINQ+R
Sbjct: 160 AVGLIVIDSVAALIPKAELEGDMGDHHVGLQARLMSQAMRKLSGVAAQTNTLMVFINQLR 219

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
            KIGV FGSPE TTGGNALK+Y+SVRLDIRR+ ++KD D   G++TRVKVVKNK A PF 
Sbjct: 220 HKIGVSFGSPEVTTGGNALKYYASVRLDIRRIATLKDGDRAVGSRTRVKVVKNKCAPPFA 279

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE-I 323
           + EF+I +G GI    E++D  ++A +V K+G+WFSF  QRLGQGR      LR   E  
Sbjct: 280 RAEFEIAFGRGIDREAEVLDRALEAGVVTKAGSWFSFGDQRLGQGRARVLESLRAEPERC 339

Query: 324 AENIESL 330
            E +E+L
Sbjct: 340 RELVEAL 346


>gi|256844906|ref|ZP_05550364.1| recombination protein RecA [Fusobacterium sp. 3_1_36A2]
 gi|256718465|gb|EEU32020.1| recombination protein RecA [Fusobacterium sp. 3_1_36A2]
          Length = 381

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/341 (54%), Positives = 254/341 (74%), Gaps = 10/341 (2%)

Query: 1   MDYRKEMNIVD--------KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGS 52
           M  +K+ NI D        K KA++ A++ I + +G G IM+LG + S+   +E + +GS
Sbjct: 5   MAAKKDKNIPDSKITDKEGKEKAVKDAMASITKDFGAGLIMKLGEKSSM--NVESIPTGS 62

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           + LDIALGIGG PKGRI+E+YG ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA
Sbjct: 63  INLDIALGIGGVPKGRIIEVYGAESSGKTTLALHIIAEAQKQGGTVAFIDAEHALDPVYA 122

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           + LGVD+  LLISQPD GEQALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M +   
Sbjct: 123 KALGVDIDELLISQPDYGEQALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQM 182

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QARLMS+ LRKLT ++++ K  ++FINQ+R KIGV +G   TTTGG ALKFYSSVR++
Sbjct: 183 GLQARLMSKGLRKLTGNLNKYKTTMIFINQIREKIGVSYGPTTTTTGGKALKFYSSVRME 242

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           ++++G++K  D   G++  VKV KNK+A PFK+  F+I+YG+GIS  GE+ID  V   ++
Sbjct: 243 VKKMGTVKQGDDPIGSEVIVKVTKNKVAPPFKEAAFEILYGKGISKIGEIIDAAVARDVI 302

Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
            K+G+WFSF+ Q +GQG+E  +  L  N E+   +E+ L++
Sbjct: 303 VKAGSWFSFRDQSIGQGKEKVRAELETNPELLAQVEADLKE 343


>gi|182412708|ref|YP_001817774.1| recA protein [Opitutus terrae PB90-1]
 gi|177839922|gb|ACB74174.1| recA protein [Opitutus terrae PB90-1]
          Length = 356

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/317 (55%), Positives = 245/317 (77%), Gaps = 3/317 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + K L+ A+S I + +G+G+IM+LG  G+    +E +S+GSL +D+ALG+GG PKGRIVE
Sbjct: 18  RDKNLDLAVSAITKQFGEGSIMRLG--GATRMKVETLSTGSLAIDLALGVGGLPKGRIVE 75

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT  L  IA++Q+ GG  AF+D EHALD  YAR +GV+L +LL+SQPD+GE
Sbjct: 76  IYGPESSGKTTFCLSVIAEAQRRGGLAAFIDVEHALDPKYARVVGVNLDDLLVSQPDSGE 135

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
            AL I + L+RS ++D+IV+DSVAAL  +AE++G MG+   G QARLMSQA+R+LT+ +S
Sbjct: 136 DALNIMETLIRSNSIDVIVLDSVAALITKAELDGQMGDLTMGSQARLMSQAMRRLTAVVS 195

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQT 250
           ++ C+ +F NQ+R KIGVMFG+PETT+GG ALKF+SSVR+DIRR   IK  +  + GN+T
Sbjct: 196 KTACVCIFTNQIREKIGVMFGNPETTSGGRALKFFSSVRIDIRRKDQIKTPEGKVIGNRT 255

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF + EFDIMY EGIS  G L+DLG++  I++K GAW +++G  +GQGR
Sbjct: 256 KIKVVKNKVAPPFTECEFDIMYDEGISRSGSLLDLGLERKILEKKGAWIAYEGALIGQGR 315

Query: 311 ENSKIFLRENIEIAENI 327
           + +K  ++E  E+AE I
Sbjct: 316 DAAKAAIKEKPELAEKI 332


>gi|291002568|gb|ADD71489.1| RecA recombinase [Vibrio crassostreae]
          Length = 251

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/251 (69%), Positives = 214/251 (85%), Gaps = 2/251 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGIS 277
           E  I+YG+G +
Sbjct: 239 ETXILYGKGFN 249


>gi|54792184|emb|CAE54408.1| recombination-repair protein [Vibrio mimicus]
 gi|54792192|emb|CAE54412.1| recombination-repair protein [Vibrio cholerae]
 gi|54792503|emb|CAE45631.1| recombination-repair protein [Vibrio mimicus]
 gi|54792507|emb|CAE45633.1| recombination-repair protein [Vibrio cholerae]
 gi|54792509|emb|CAE45634.1| recombination-repair protein [Vibrio cholerae]
 gi|54792511|emb|CAE45635.1| recombination-repair protein [Vibrio cholerae]
 gi|54792513|emb|CAE45636.1| recombination-repair protein [Vibrio cholerae]
 gi|58415409|emb|CAH57119.1| recA protein [Vibrio cholerae]
 gi|58415411|emb|CAH57120.1| recA protein [Vibrio cholerae]
 gi|58415413|emb|CAH57121.1| recA protein [Vibrio cholerae]
 gi|58415417|emb|CAH57123.1| recA protein [Vibrio cholerae]
 gi|58415419|emb|CAH57124.1| recA protein [Vibrio cholerae]
 gi|58415568|emb|CAH57198.1| recA protein [Vibrio mimicus]
 gi|58415570|emb|CAH57199.1| recA protein [Vibrio mimicus]
          Length = 256

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/258 (67%), Positives = 218/258 (84%), Gaps = 2/258 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAV
Sbjct: 59  LIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAV 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEA 238

Query: 267 EFDIMYGEGISFFGELID 284
              IMYG+G +  GELID
Sbjct: 239 NTQIMYGQGFNREGELID 256


>gi|223717669|emb|CAX46414.1| recombination-repair protein [Vibrio natriegens]
          Length = 248

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 169/244 (69%), Positives = 210/244 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 3   VETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE
Sbjct: 63  HALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 123 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 182

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GEL+D
Sbjct: 183 FYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELVD 242

Query: 285 LGVK 288
           LGVK
Sbjct: 243 LGVK 246


>gi|162286685|gb|ABX83453.1| RecA [Acidovorax defluvii]
          Length = 239

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/239 (76%), Positives = 214/239 (89%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           +VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGTCAFVDAEH
Sbjct: 1   QVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKQGGTCAFVDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA+KLGV L +LLISQPDTGEQALEI D LVRSGAVD+IVIDSVAALTP+AEIEG
Sbjct: 61  ALDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVIDSVAALTPKAEIEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +MG+SLPG+QARLMSQALRKLTS+I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKF
Sbjct: 121 EMGDSLPGLQARLMSQALRKLTSTIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKF 180

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           Y+SVRLDIRR G+IK  +   GN+T+VKVVKNK++ PFK  EFDI++GEGIS  GE+ID
Sbjct: 181 YASVRLDIRRTGTIKKGEEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIID 239


>gi|464598|sp|P34716|RECA_ACIFA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|414338|dbj|BAA03975.1| RecA protein [Acidocella facilis]
          Length = 354

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/318 (60%), Positives = 238/318 (74%), Gaps = 3/318 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
              A  QI+  +GKGA+M+ G +  I +  +V S+GSLGLD ALG GG P+GR+VEIYGP
Sbjct: 10  FSPAFMQIEGQFGKGAVMRAGDKPGIND-PDVKSTGSLGLDGALGQGGLPRGRVVEIYGP 68

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA +Q  G T AF DAEHALD  +A KLGV++K LLISQPDTGEQALE
Sbjct: 69  ESSGKTTLTLKAIASAQAEGATPAFTDAEHALDPGFASKLGVNVKRLLISQPDTGEQALE 128

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I DML RSGAVD+IV DSVAALTP+AEIEG+MG+S  G+ ARLMSQALR  T++ISR   
Sbjct: 129 IADMLFRSGAVDVIVKDSVAALTPKAEIEGEMGDSHQGLHARLMSQALRNKTANISRWNK 188

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN-QTRVKV 254
           +++F  Q+RMK+GV +G PETTTGGNALKFY+SVRLDIRR+G++K   + + +  TRVKV
Sbjct: 189 LVIFKKQIRMKMGV-YGRPETTTGGNALKFYASVRLDIRRMGAMKKSATKSYDWSTRVKV 247

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK+A PF+Q E  I YGEGI    E +DLGVK   V+KSG W+S+ G+R+GQG+ N++
Sbjct: 248 VKNKVAPPFRQAELAIYYGEGIYRGSEPVDLGVKLENVEKSGGWYSYPGRRIGQGKANAR 307

Query: 315 IFLRENIEIAENIESLLR 332
            +LR   E     E  +R
Sbjct: 308 QYLRVKPEFPGIFEQGIR 325


>gi|6225927|sp|O86411|RECA_NEISI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|3421314|emb|CAA11603.1| recA [Neisseria sicca]
          Length = 237

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 171/237 (72%), Positives = 205/237 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLD+ALG+GG P+GR+V+I+GPESSGKTTL L  IAQ QK GG CAF+DAEHA D
Sbjct: 1   STGSLGLDLALGVGGLPRGRVVKIFGPESSGKTTLCLEAIAQCQKNGGICAFIDAEHAFD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLG+ ++ L +SQPDTGEQALEI D LVRSG VD++V+DSVAAL P+AEIEG+MG
Sbjct: 61  PVYARKLGIKVEELYLSQPDTGEQALEICDTLVRSGGVDMVVVDSVAALVPKAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRKLT  I R+  ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+S
Sbjct: 121 DSHVGLQARLMSQALRKLTGHIKRTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           VRLDIRR G IK  D + GN+T+VKV+KNK+A PF+Q EFDI+YGEG+S+ GELIDL
Sbjct: 181 VRLDIRRTGQIKKGDDVIGNETKVKVIKNKVAPPFRQAEFDILYGEGVSWEGELIDL 237


>gi|304564677|gb|ADM45202.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 263

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/265 (66%), Positives = 223/265 (84%), Gaps = 2/265 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH
Sbjct: 1   FGKGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALH 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAV
Sbjct: 59  MIAEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAV 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           DIIVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K
Sbjct: 119 DIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           +GVMFG+PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ 
Sbjct: 179 VGVMFGNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQA 238

Query: 267 EFDIMYGEGISFFGELIDLGVKASI 291
           EFDIMYGEGIS  G ++D+G    I
Sbjct: 239 EFDIMYGEGISREGSILDIGASIDI 263


>gi|225851492|ref|YP_002731726.1| protein RecA [Persephonella marina EX-H1]
 gi|225644943|gb|ACO03129.1| protein RecA [Persephonella marina EX-H1]
          Length = 338

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/322 (57%), Positives = 255/322 (79%), Gaps = 3/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KALE+AL+QI++ +GKG+IM L S+    + ++V+ SGSL LDIA GIGG PKGR+VE
Sbjct: 13  KKKALESALAQIEKKFGKGSIMTLSSEAE--KTVDVIPSGSLTLDIATGIGGVPKGRVVE 70

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA++QK GG   F+DAEHA D  YA+ +GV+L++L+ISQPD GE
Sbjct: 71  IYGPESSGKTTLTLHIIAEAQKRGGKAVFIDAEHAFDPKYAKAIGVNLEDLIISQPDYGE 130

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI + L+RSG +D+I+IDSVAAL P+AE+EGD+ +S  G+ ARLMS+A+R L  +++
Sbjct: 131 QALEIAETLIRSGVIDVIIIDSVAALVPKAELEGDIEDSNVGLHARLMSKAMRVLKGAVN 190

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S   L+ INQ+R K+GVMFG+PETTTGG A+KF++ +RL++R+   IKD     G++ +
Sbjct: 191 KSNTSLILINQIREKVGVMFGNPETTTGGRAIKFFADMRLEVRK-KDIKDSGEKVGSRVK 249

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PFK+ EFD++YGEGIS  GEL+DLG +  I+ KSGAW+S+   ++GQGRE
Sbjct: 250 VKVVKNKLAPPFKEAEFDVIYGEGISKEGELLDLGEEIGIIKKSGAWYSYGDSKIGQGRE 309

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
            ++ FL++N +IA+ IE+ +R+
Sbjct: 310 KAREFLKQNPDIAQEIENRIRE 331


>gi|283781556|ref|YP_003372311.1| recA protein [Pirellula staleyi DSM 6068]
 gi|283440009|gb|ADB18451.1| recA protein [Pirellula staleyi DSM 6068]
          Length = 358

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 170/318 (53%), Positives = 242/318 (76%), Gaps = 2/318 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           ++ +  L+ AL QI++ +G+G+IM LG    +   I  + +GSL LD+ALG  G P+GRI
Sbjct: 23  IENNSVLKNALQQIEKQFGEGSIMPLGGDRQMV--IHGIPTGSLSLDLALGGKGIPRGRI 80

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EI+GPESSGKTTLALH  AQ+QK GG  A +DAEHA D  + +KLGV L  LL+SQP+ 
Sbjct: 81  IEIFGPESSGKTTLALHVAAQAQKAGGIAAIIDAEHAFDPTWGKKLGVQLDTLLVSQPNN 140

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GE+A++IT+MLV+S AVD+I+IDSVAAL P+ E++G++G++  G+QARLMSQ++RKLT +
Sbjct: 141 GEEAMQITEMLVKSNAVDVIIIDSVAALVPKQELDGEIGDTHVGLQARLMSQSMRKLTGA 200

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I+RSK  ++FINQ+R KIGV +GSPETT GG ALKFY+S R+D+RR+  IKD + + G +
Sbjct: 201 IARSKTAVIFINQIREKIGVSYGSPETTPGGRALKFYASCRIDVRRISQIKDGEDVVGQR 260

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            R KVVKNK+A PF+  EFD+M+  GIS+ G+++D+G++A ++ +SGAWF +    +GQG
Sbjct: 261 VRTKVVKNKVAPPFRVAEFDMMHTCGISYEGDILDMGLEAKVLTRSGAWFKYNDAYIGQG 320

Query: 310 RENSKIFLRENIEIAENI 327
           +E ++  L+EN  I E I
Sbjct: 321 KEKARTHLQENPHITEEI 338


>gi|304564641|gb|ADM45184.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 263

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/260 (67%), Positives = 222/260 (85%), Gaps = 2/260 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH
Sbjct: 2   FGKGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAV
Sbjct: 60  MIAEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           DIIVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K
Sbjct: 120 DIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           +GVMFG+PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ 
Sbjct: 180 VGVMFGNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQA 239

Query: 267 EFDIMYGEGISFFGELIDLG 286
           EFDIMYGEGIS  G ++D+G
Sbjct: 240 EFDIMYGEGISREGSILDIG 259


>gi|290795127|gb|ADD64579.1| RecA recombinase [Vibrio ordalii]
          Length = 253

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/255 (68%), Positives = 216/255 (84%), Gaps = 2/255 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSGA+D
Sbjct: 59  IAAAQRVGKTCAFIDAEHALDPIYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAID 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VIVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ +
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAD 238

Query: 268 FDIMYGEGISFFGEL 282
             I+YG+G +  GEL
Sbjct: 239 TQILYGQGFNREGEL 253


>gi|215271652|emb|CAR57859.1| recombination-repair protein [Vibrio campbellii]
          Length = 257

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 171/247 (69%), Positives = 210/247 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 11  VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAE 70

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE
Sbjct: 71  HALDPVYAMKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIE 130

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 131 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 190

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELID
Sbjct: 191 FYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELID 250

Query: 285 LGVKASI 291
           LGVK  +
Sbjct: 251 LGVKHKL 257


>gi|218281452|ref|ZP_03487895.1| hypothetical protein EUBIFOR_00460 [Eubacterium biforme DSM 3989]
 gi|218217374|gb|EEC90912.1| hypothetical protein EUBIFOR_00460 [Eubacterium biforme DSM 3989]
          Length = 338

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/329 (55%), Positives = 259/329 (78%), Gaps = 2/329 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           KE    +K K L   L++I+R YGKG++M+LG + ++   IE + SGSL LD ALGIGG+
Sbjct: 3   KEKVETNKDKLLSDVLNEIEREYGKGSVMKLGDRAAV--DIEPIPSGSLLLDDALGIGGY 60

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EI+GPESSGKTTLALH +A+ QK GG  AF+DAE+A+D +YA+ LGV++  L++
Sbjct: 61  PKGRIIEIFGPESSGKTTLALHAVAEVQKKGGRAAFIDAENAIDPVYAKNLGVNIDELIL 120

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD+GEQ L+I  MLV SGAVD++V+DSVAAL P+AE++G+MG++  G+QAR+MS+A+R
Sbjct: 121 SQPDSGEQGLDIMLMLVESGAVDLVVVDSVAALVPQAELDGEMGDNQVGLQARMMSKAMR 180

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KL  +++++ C  +FINQ+R K+GV++G+PETT GG ALKFYSSVR+DIR+  +IK+   
Sbjct: 181 KLAGAMNQNDCTAIFINQLREKVGVIYGNPETTPGGRALKFYSSVRVDIRKADAIKNGTD 240

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           I GN+ +VK+VKNK+A PFK    +IMYGEGIS+  EL+DL V A+IV K+GAWFS++G+
Sbjct: 241 IVGNKVKVKIVKNKVAPPFKSAVLEIMYGEGISYISELLDLCVDANIVKKAGAWFSYEGE 300

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQ 333
           ++GQG+E +K +++ N E    +E  L++
Sbjct: 301 KIGQGKEAAKAYIKANPEFKSMLEEKLKE 329


>gi|160901572|ref|YP_001567153.1| recombinase A [Petrotoga mobilis SJ95]
 gi|238687151|sp|A9BEV2|RECA_PETMO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|160359216|gb|ABX30830.1| recA protein [Petrotoga mobilis SJ95]
          Length = 368

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/340 (53%), Positives = 250/340 (73%), Gaps = 6/340 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K + LE  + ++++ +G G++M +G +G     + VV SG L LDIALG+GG+P+GRI+
Sbjct: 10  NKEELLEKLVKELEKNHGTGSVMLMG-KGLDNSNLAVVPSGCLSLDIALGVGGYPRGRII 68

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYG ESSGKTTLALH++A+ QK  G  AFVDAEHALD  YARKLGVD+  L++SQPD G
Sbjct: 69  EIYGNESSGKTTLALHSLAEVQKLNGIVAFVDAEHALDVEYARKLGVDVDKLIVSQPDYG 128

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRS  VD+IV+DSVAAL P+AEIEG MG+S  G+QARLMSQALRKL  SI
Sbjct: 129 EQALEIVDSLVRSNIVDLIVVDSVAALVPKAEIEGAMGDSHMGLQARLMSQALRKLAGSI 188

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I++FINQ+RMKIGV++G+PETTTGG ALKFY+++R+++R+   I++     GN+T
Sbjct: 189 NKSKSIVIFINQVRMKIGVVYGNPETTTGGIALKFYATIRVEVRKGNPIREGKDQIGNET 248

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR----- 305
            +KVVKNK+A PFKQ   D+++G GI    ++ ++ V+  ++ + GAWFSF  +      
Sbjct: 249 TLKVVKNKVAPPFKQANVDMIFGRGIPKENDIFNIAVEEELIQRKGAWFSFINENGEEIS 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           LGQG+ NS  +L EN +I + +E  +R+   L+    L E
Sbjct: 309 LGQGKTNSVSYLMENPDILDYLEYTIRKKHNLIIPDYLIE 348


>gi|304564629|gb|ADM45178.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 262

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/260 (67%), Positives = 222/260 (85%), Gaps = 2/260 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH
Sbjct: 1   FGKGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALH 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAV
Sbjct: 59  MIAEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAV 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           DIIVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K
Sbjct: 119 DIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           +GVMFG+PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ 
Sbjct: 179 VGVMFGNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQA 238

Query: 267 EFDIMYGEGISFFGELIDLG 286
           EFDIMYGEGIS  G ++D+G
Sbjct: 239 EFDIMYGEGISREGSILDIG 258


>gi|54792449|emb|CAE45604.1| recombination-repair protein [Vibrio aestuarianus]
 gi|58415369|emb|CAH57099.1| recA protein [Vibrio aestuarianus]
          Length = 252

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 172/251 (68%), Positives = 214/251 (85%), Gaps = 2/251 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGIS 277
           E  I+YG+G +
Sbjct: 239 ETQILYGQGFN 249


>gi|269784252|emb|CBH50771.1| recA protein [Vibrio sp. Rd2L5]
          Length = 243

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/243 (71%), Positives = 208/243 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +QK G TCAFVDAEHALD IY
Sbjct: 1   SLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+KLGVD+  LL+SQPDTGE ALEI D L RSGA+D++VIDSVAALTP+AEIEG+MG+S 
Sbjct: 61  AQKLGVDIDALLVSQPDTGEPALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
            G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRL
Sbjct: 121 MGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRL 180

Query: 232 DIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASI 291
           DIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +
Sbjct: 181 DIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKNKL 240

Query: 292 VDK 294
           V+K
Sbjct: 241 VEK 243


>gi|52630785|gb|AAU84860.1| RecA [Burkholderia sacchari]
          Length = 231

 Score =  368 bits (945), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/231 (74%), Positives = 206/231 (89%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AE
Sbjct: 61  AEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           IEG+MG+SLPG+QARLMSQALRKLT +I ++ C+++FINQ+RMKIGVMFG+PETTTGGNA
Sbjct: 121 IEGEMGDSLPGLQARLMSQALRKLTGTIKKTNCMVIFINQIRMKIGVMFGNPETTTGGNA 180

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           LKFYSSVRLDIRR+GSIK  D + G++TRVKVVKNK++ PF++  FDI+YG
Sbjct: 181 LKFYSSVRLDIRRIGSIKKNDEVIGSETRVKVVKNKVSPPFREPVFDILYG 231


>gi|291002570|gb|ADD71490.1| RecA recombinase [Vibrio crassostreae]
          Length = 250

 Score =  368 bits (945), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/250 (69%), Positives = 213/250 (85%), Gaps = 2/250 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D
Sbjct: 59  IAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAID 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAE 238

Query: 268 FDIMYGEGIS 277
             I+YG+G +
Sbjct: 239 TXILYGKGFN 248


>gi|242038743|ref|XP_002466766.1| hypothetical protein SORBIDRAFT_01g013810 [Sorghum bicolor]
 gi|241920620|gb|EER93764.1| hypothetical protein SORBIDRAFT_01g013810 [Sorghum bicolor]
          Length = 415

 Score =  368 bits (945), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/326 (54%), Positives = 242/326 (74%), Gaps = 5/326 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           +VD+ KAL+AA++ I   +GKG++ +LGS G  F  +E   SG L LD ALG GG PKGR
Sbjct: 63  LVDRQKALDAAMNDINSSFGKGSVTRLGSAGGAF--VETFPSGCLTLDFALG-GGLPKGR 119

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VE+YGPESSGKTTLALH IA+ QK GG    VDAEHA D  Y++ LGVD++NL++ QPD
Sbjct: 120 VVEVYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDIENLIVCQPD 179

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GE ALEI D + RSGA+D+I IDSV+ALTPRAEIEG++G    G+QARLMSQALRK++ 
Sbjct: 180 NGEMALEIADRMCRSGAIDLICIDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSG 239

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--DSIT 246
           + S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++SVRL+IR +G IK    D   
Sbjct: 240 NASKAGCTLMFLNQIRYKIGVFYGNPEVTSGGIALKFFASVRLEIRPIGKIKSPKGDEDV 299

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G + RV+V K+K++ P+KQ EF+I++GEG+S  G ++D      +V K G+W+S+K  RL
Sbjct: 300 GVKVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCVLDCAELMDVVAKKGSWYSYKDIRL 359

Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332
           GQGRE +  +LRE+  I + IE ++R
Sbjct: 360 GQGREKALQYLRESPTICDEIEKVVR 385


>gi|304564431|gb|ADM45079.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 261

 Score =  368 bits (945), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/259 (67%), Positives = 221/259 (85%), Gaps = 2/259 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH 
Sbjct: 1   GKGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHM 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVD
Sbjct: 59  IAEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           IIVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+
Sbjct: 119 IIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKV 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETT GG ALKFY+++RLD+R+V +IK  + I G++TRVKVVKNK+A PFKQ E
Sbjct: 179 GVMFGNPETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAE 238

Query: 268 FDIMYGEGISFFGELIDLG 286
           FDIMYGEGIS  G ++D+G
Sbjct: 239 FDIMYGEGISREGSILDIG 257


>gi|162286669|gb|ABX83445.1| RecA [Acidovorax delafieldii]
          Length = 239

 Score =  368 bits (944), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/239 (76%), Positives = 214/239 (89%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           +VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGTCAFVDAEH
Sbjct: 1   QVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKQGGTCAFVDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA+KLGV L +LLISQPDTGEQALEI D LVRSGAVD+IV+DSVAALTP+AEIEG
Sbjct: 61  ALDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAALTPKAEIEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +MG++LPG+QARLMSQALRKLT++I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKF
Sbjct: 121 EMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKF 180

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           Y+SVRLDIRR G+IK  D   GN+T+VKVVKNK++ PFK  EFDI++GEGIS  GE+ID
Sbjct: 181 YASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIID 239


>gi|115454275|ref|NP_001050738.1| Os03g0639700 [Oryza sativa Japonica Group]
 gi|108710024|gb|ABF97819.1| DNA repair protein recA, chloroplast precursor, putative, expressed
           [Oryza sativa Japonica Group]
 gi|113549209|dbj|BAF12652.1| Os03g0639700 [Oryza sativa Japonica Group]
 gi|215704578|dbj|BAG94211.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 418

 Score =  368 bits (944), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/327 (54%), Positives = 241/327 (73%), Gaps = 5/327 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
            ++D+ KAL+AA++ I   +GKG++ +LGS G  F  +E   SG L LD ALG GG PKG
Sbjct: 66  RLIDRQKALDAAMNDINSSFGKGSVTRLGSAGGAF--VETFPSGCLTLDFALG-GGLPKG 122

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R+VE+YGPESSGKTTLALH IA+ QK GG    VDAEHA D  Y++ LGVD++NL++ QP
Sbjct: 123 RVVEVYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDIENLIVCQP 182

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GE ALEI D + RSGA+D+I IDSV+ALTPRAEIEG++G    G+QARLMSQALRK++
Sbjct: 183 DNGEMALEIADRMCRSGAIDLICIDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMS 242

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--DSI 245
            + S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++SVRL+IR +G IK    D  
Sbjct: 243 GNASKAGCTLMFLNQIRYKIGVFYGNPEVTSGGIALKFFASVRLEIRPIGKIKSAKGDED 302

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            G + RV+V K+K++ P+KQ EF+I++GEG+S  G ++D      +V K G+W+S+K  R
Sbjct: 303 VGVKVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCVLDCAELMEVVAKKGSWYSYKEMR 362

Query: 306 LGQGRENSKIFLRENIEIAENIESLLR 332
           LGQGRE +  +LRE+  I + IE  +R
Sbjct: 363 LGQGREKALQYLRESPTICDEIEKAVR 389


>gi|179185020|gb|ACB78167.1| RecA [Vibrio sp. CECT 7223]
          Length = 251

 Score =  368 bits (944), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/253 (69%), Positives = 214/253 (84%), Gaps = 2/253 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELI 283
           +YG+G +  GELI
Sbjct: 239 LYGKGFNREGELI 251


>gi|328944025|ref|ZP_08241490.1| recombination protein A [Atopobium vaginae DSM 15829]
 gi|327491994|gb|EGF23768.1| recombination protein A [Atopobium vaginae DSM 15829]
          Length = 363

 Score =  368 bits (944), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/327 (60%), Positives = 256/327 (78%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ K LE   ++I++ +GKG+IM+ G  G   E +E + +G+L LD+ALGIGG P+GRI+
Sbjct: 19  ERDKQLETTTAEIEKRFGKGSIMKYGDSGPDLE-VEAIPTGALSLDVALGIGGVPRGRII 77

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+L  +A++Q  GG  AF+DAEHALD  YA ++GVD+  +LISQPDTG
Sbjct: 78  EIYGPESSGKTTLSLEILAEAQALGGVVAFIDAEHALDPNYAARIGVDIDEVLISQPDTG 137

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D++V+DSVAAL PRAEIEG++GE+  G+QARLMSQALRKL  S+
Sbjct: 138 EQALEICDMLVRSGAIDVVVVDSVAALVPRAEIEGEIGETTVGLQARLMSQALRKLAGSL 197

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+SK   +FINQ+R KIGVMFG+PETT GG ALKF+SSVRLDIRRV ++K  + + GN+ 
Sbjct: 198 SKSKTTCIFINQLREKIGVMFGNPETTPGGRALKFFSSVRLDIRRVETLKKNNDMIGNRV 257

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDIMYG GIS  G ++D+  +  IV KSGAWF++  QRLGQGR
Sbjct: 258 RVKVVKNKVAPPFKQAEFDIMYGTGISKEGTVLDMAAELGIVQKSGAWFNYGEQRLGQGR 317

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           E  K FL +N ++ E + + ++   GL
Sbjct: 318 EAVKEFLVQNPDLLEELTNKVKVACGL 344


>gi|301599263|emb|CBW30984.1| recombinase A [Vibrio sp. BFLP-10]
          Length = 257

 Score =  368 bits (944), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 172/259 (66%), Positives = 217/259 (83%), Gaps = 2/259 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE
Sbjct: 1   KQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVE 58

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGE
Sbjct: 59  VYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGE 118

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ 
Sbjct: 119 QALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLK 178

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR
Sbjct: 179 QSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETR 238

Query: 252 VKVVKNKMASPFKQVEFDI 270
           +KVVKNK+A+P K+    I
Sbjct: 239 IKVVKNKIAAPLKEANTQI 257


>gi|117675773|emb|CAL69157.1| recombinase A [Agrococcus jenensis]
          Length = 251

 Score =  368 bits (944), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 176/251 (70%), Positives = 208/251 (82%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           + V+ +GS+ LD+ALG+GG P+GRIVEIYGPESSGKTTL LH IA +Q+ GG  AF+DAE
Sbjct: 1   VAVIPTGSIALDVALGVGGLPRGRIVEIYGPESSGKTTLTLHAIANAQRAGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA KLGVD+  LL+SQPDTGEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIE
Sbjct: 61  HALDPDYAAKLGVDIDALLVSQPDTGEQALEIADMLVRSGAIDLIVIDSVAALVPRAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKLT  ++++   ++FINQ+R KIGV FGSPETT GG ALK
Sbjct: 121 GEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLREKIGVFFGSPETTAGGKALK 180

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA PFKQ EFDI+YG GIS  G LID
Sbjct: 181 FYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKMAPPFKQAEFDILYGIGISREGSLID 240

Query: 285 LGVKASIVDKS 295
            GV+ +IV KS
Sbjct: 241 FGVEHAIVKKS 251


>gi|169248056|gb|ACA51811.1| RecA [Aliivibrio logei]
 gi|169248058|gb|ACA51812.1| RecA [Aliivibrio logei]
          Length = 244

 Score =  367 bits (943), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 172/244 (70%), Positives = 208/244 (85%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  I+ +QK G TCAF+DAEHALD
Sbjct: 1   STGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLEVISAAQKQGKTCAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYA+KLG+D+  LLISQPD GEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG
Sbjct: 61  PIYAQKLGIDINELLISQPDNGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARL+SQ++RK+T ++  S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+S
Sbjct: 121 DSHMGLQARLLSQSMRKMTGNLKASNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           VRLDIRR G++KD D + GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK
Sbjct: 181 VRLDIRRTGAVKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVK 240

Query: 289 ASIV 292
             +V
Sbjct: 241 HKLV 244


>gi|54792172|emb|CAE54402.1| recombination-repair protein [Vibrio fortis]
          Length = 246

 Score =  367 bits (943), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 172/240 (71%), Positives = 207/240 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAFVDAE
Sbjct: 7   VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFVDAE 66

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE
Sbjct: 67  HALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEIE 126

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 127 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 186

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GELID
Sbjct: 187 FYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQAETQILYGQGFNREGELID 246


>gi|3421276|emb|CAA11606.1| recA [Neisseria mucosa]
          Length = 237

 Score =  367 bits (943), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 172/237 (72%), Positives = 203/237 (85%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLG+D+ALG+GG P+GR+VEI GPESSG TTL L  IAQ QK GG CAF+DAEHA D
Sbjct: 1   STGSLGVDLALGVGGLPRGRVVEILGPESSGNTTLCLEAIAQCQKNGGICAFIDAEHAFD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYARKLGV ++ L +SQPDTGEQALEI D LVRSG +D++V+DSVAAL P+AEIEG+MG
Sbjct: 61  PIYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRKLT  I R+  ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+S
Sbjct: 121 DSHVGLQARLMSQALRKLTGHIKRTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           VRLDIRR G IK  D + GN+T+VKV+KNK+A PF+Q EFDI+YGEGIS+ GELIDL
Sbjct: 181 VRLDIRRTGQIKKGDDVIGNETKVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDL 237


>gi|168703342|ref|ZP_02735619.1| recombinase A [Gemmata obscuriglobus UQM 2246]
          Length = 388

 Score =  367 bits (943), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 177/325 (54%), Positives = 250/325 (76%), Gaps = 3/325 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +  +K L+ AL+ I++ +GKG+IM LG    +   I+ +S+G+L LD+ALG  G P+GRI
Sbjct: 18  IKDNKELKTALAAIEKEFGKGSIMSLGDMNGL--DIDCISTGALSLDLALGGKGIPRGRI 75

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYG E+SGKTT+ALHTIAQ+QK GG  AF+DAEHALD  +A++LGVDL NLL+SQP  
Sbjct: 76  VEIYGAEASGKTTIALHTIAQAQKAGGVAAFIDAEHALDPSWAKRLGVDLDNLLVSQPGY 135

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE-GDMGESLPGMQARLMSQALRKLTS 188
           GE+AL I +MLV+S AVD+IV+DSVAAL P+ EI+  ++G++  G+QARLMSQA+R LT 
Sbjct: 136 GEEALRIAEMLVKSNAVDLIVVDSVAALVPKNEIQDSEIGDTKVGLQARLMSQAMRILTP 195

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            I++S+  L+FINQ+R KIGVM+G P TTTGG ALKFY+SVR++++RV  +KD +   G 
Sbjct: 196 QINKSRTCLMFINQIRQKIGVMYGDPNTTTGGLALKFYASVRMEVKRVTHVKDGEDTIGA 255

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRV+VVKNK+A PF+  EF++++  GI F G++I L ++  +++KSGA FS+K QRLGQ
Sbjct: 256 ETRVRVVKNKIAPPFRNAEFELLHDRGIDFEGDVIKLALEDEVIEKSGAHFSYKEQRLGQ 315

Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333
           G +N+  FLREN  + + I + +++
Sbjct: 316 GLKNAVEFLRENHAVRDEIVAAVKE 340


>gi|179184986|gb|ACB78166.1| RecA [Vibrio sp. CECT 7226]
          Length = 251

 Score =  367 bits (943), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 174/253 (68%), Positives = 214/253 (84%), Gaps = 2/253 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQKVGKTCAFIDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELI 283
           +YG+G +  GELI
Sbjct: 239 LYGKGFNREGELI 251


>gi|294785811|ref|ZP_06751099.1| protein RecA [Fusobacterium sp. 3_1_27]
 gi|294487525|gb|EFG34887.1| protein RecA [Fusobacterium sp. 3_1_27]
          Length = 377

 Score =  367 bits (943), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 184/341 (53%), Positives = 253/341 (74%), Gaps = 10/341 (2%)

Query: 1   MDYRKEMNIVD--------KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGS 52
           M  +K+ N+ D        K KA++ A++ I + +G G IM+LG + S+   +E + +GS
Sbjct: 1   MAAKKDKNVPDTKITDKEGKEKAVKDAMASITKDFGAGLIMKLGEKSSM--NVESIPTGS 58

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           + LDIALGIGG PKGRI+E+YG ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA
Sbjct: 59  INLDIALGIGGVPKGRIIEVYGAESSGKTTLALHIIAEAQKQGGTVAFIDAEHALDPVYA 118

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           + L VD+  LLISQPD GEQALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M +   
Sbjct: 119 KALCVDIDELLISQPDYGEQALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQM 178

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QARLMS+ LRKLT ++++ K  ++FINQ+R KIGV +G   TTTGG ALKFYSSVR++
Sbjct: 179 GLQARLMSKGLRKLTGNLNKYKTTMIFINQIREKIGVSYGPTTTTTGGKALKFYSSVRME 238

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           ++++G++K  D   G++  VKV KNK+A PFK+  F+I+YG+GIS  GE+ID  V   ++
Sbjct: 239 VKKMGTVKQGDDPIGSEVIVKVTKNKVAPPFKEAAFEILYGKGISKIGEIIDAAVARDVI 298

Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
            K+G+WFSF+ Q +GQG+E  +  L  N E+   +E+ L++
Sbjct: 299 VKAGSWFSFRDQSIGQGKEKVRAELETNPELLAQVEADLKE 339


>gi|304564619|gb|ADM45173.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 260

 Score =  367 bits (943), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 175/259 (67%), Positives = 221/259 (85%), Gaps = 2/259 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH 
Sbjct: 1   GKGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHM 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVD
Sbjct: 59  IAEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           IIVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+
Sbjct: 119 IIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKV 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ E
Sbjct: 179 GVMFGNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAE 238

Query: 268 FDIMYGEGISFFGELIDLG 286
           FDIMYGEGIS  G ++D+G
Sbjct: 239 FDIMYGEGISREGSILDIG 257


>gi|29565993|ref|NP_817564.1| gp117 [Mycobacterium phage Cjw1]
 gi|109302868|ref|YP_654870.1| gp117 [Mycobacterium phage 244]
 gi|194303408|ref|YP_002014433.1| gp114 [Mycobacterium phage Porky]
 gi|29424718|gb|AAN01729.1| gp117 [Mycobacterium phage Cjw1]
 gi|88910159|gb|ABD58090.1| gp117 [Mycobacterium phage 244]
 gi|194150893|gb|ACF33929.1| gp114 [Mycobacterium phage Porky]
 gi|255928432|gb|ACU42048.1| gp116 [Mycobacterium phage Pumpkin]
          Length = 320

 Score =  367 bits (943), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 172/319 (53%), Positives = 243/319 (76%), Gaps = 4/319 (1%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           +L+ AL+++ + +G G+ M+LG +    + ++V+ +GS+ LD ALGIGG+P+GR+VEIYG
Sbjct: 2   SLKEALAEVDKRFGAGSAMKLGDKP---QTVDVIPTGSIALDGALGIGGYPRGRVVEIYG 58

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGK+TL LH +A +QK GG  A++DAEH+LD  YA+ LGVDL NL++ QPDTGEQAL
Sbjct: 59  PESSGKSTLCLHAVANAQKAGGNAAYIDAEHSLDPEYAKALGVDLDNLVVVQPDTGEQAL 118

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EI D+LV+SG + I+V+DSVAAL PRAE+EGD+G+S  G+ ARLMSQA+RKLT +IS + 
Sbjct: 119 EIVDLLVKSGELSIVVVDSVAALVPRAELEGDIGDSHVGLHARLMSQAMRKLTGTISSTN 178

Query: 195 CILVFINQMRMKIG-VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            + +++NQ+R KIG V +G  ETTTGG AL+FY+SVR+D+RR+ + K+ D   GN+TRVK
Sbjct: 179 TLTLWVNQLREKIGNVGYGPNETTTGGKALRFYASVRMDVRRIATEKEGDEAVGNRTRVK 238

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VVKNK+A P +  EF ++YGEGIS   EL+DL V   +V KSGAWF +  + + QG+  +
Sbjct: 239 VVKNKLAPPHRNAEFSVVYGEGISREVELLDLAVSQGLVKKSGAWFKYGDKNVAQGKPKA 298

Query: 314 KIFLRENIEIAENIESLLR 332
             +L+ N +I ++IE  +R
Sbjct: 299 VQWLKANPDITDSIEQAIR 317


>gi|54792194|emb|CAE54413.1| recombination-repair protein [Vibrio cholerae]
 gi|58415415|emb|CAH57122.1| recA protein [Vibrio cholerae]
          Length = 255

 Score =  367 bits (943), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 172/257 (66%), Positives = 217/257 (84%), Gaps = 2/257 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAV
Sbjct: 59  LIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAV 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEA 238

Query: 267 EFDIMYGEGISFFGELI 283
              IMYG+G +  GELI
Sbjct: 239 NTQIMYGQGFNREGELI 255


>gi|195927672|gb|ACG55501.1| RecA [Vibrio halioticoli]
          Length = 251

 Score =  367 bits (943), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 173/253 (68%), Positives = 215/253 (84%), Gaps = 2/253 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLALDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGV++ +LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPIYAQKLGVNIDSLLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IKD D I GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEIVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELI 283
           MYG+G +  GELI
Sbjct: 239 MYGQGFNREGELI 251


>gi|304564743|gb|ADM45235.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 262

 Score =  367 bits (942), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 175/264 (66%), Positives = 222/264 (84%), Gaps = 2/264 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH I
Sbjct: 1   KGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDI
Sbjct: 59  AEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDI 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+G
Sbjct: 119 IVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EF
Sbjct: 179 VMFGNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEF 238

Query: 269 DIMYGEGISFFGELIDLGVKASIV 292
           DIMYGEGIS  G ++D+G    I+
Sbjct: 239 DIMYGEGISREGSILDIGASIDII 262


>gi|117675761|emb|CAL69151.1| recombinase A [Subtercola frigoramans]
          Length = 251

 Score =  367 bits (942), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 174/251 (69%), Positives = 210/251 (83%)

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEIYGPESSGKTTL LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPD
Sbjct: 1   IVEIYGPESSGKTTLTLHAIANAQRGGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPD 60

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DMLVRSG++D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT 
Sbjct: 61  TGEQALEIADMLVRSGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTG 120

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            ++++   ++FINQ+R KIGV FGSPETT GG ALKFY+S+RLDIRR+ ++K+     GN
Sbjct: 121 GLNQTNTTMIFINQLREKIGVFFGSPETTAGGKALKFYASIRLDIRRIETLKEGTEAVGN 180

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNKMA PFKQ EFDI+YG GIS  G LID GV+  IV KSGAW+++ G++LGQ
Sbjct: 181 RTRVKVVKNKMAPPFKQAEFDIIYGIGISREGSLIDFGVEHEIVRKSGAWYTYDGEQLGQ 240

Query: 309 GRENSKIFLRE 319
           G+ENS+ FL+E
Sbjct: 241 GKENSRRFLKE 251


>gi|149178836|ref|ZP_01857416.1| recombinase A [Planctomyces maris DSM 8797]
 gi|148842311|gb|EDL56694.1| recombinase A [Planctomyces maris DSM 8797]
          Length = 362

 Score =  367 bits (942), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 182/328 (55%), Positives = 255/328 (77%), Gaps = 2/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D    L+ AL QI++ +G+GAIM+L   G+    +  ++SG+L LD+ALG  GFP+GRI+
Sbjct: 21  DSEGMLKNALGQIEQAFGRGAIMKL--TGANARSVPSIASGALSLDLALGGAGFPRGRII 78

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTLALH IA +QK GG  AF+DAEHALD ++A+KLGV++  LL+SQP  G
Sbjct: 79  ELYGPESSGKTTLALHVIANAQKEGGIAAFIDAEHALDPVWAKKLGVNISELLVSQPTYG 138

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ L+I +ML++S +VD+IV+DSVAAL P+AE++G++G++  G+QAR+MSQA+RKLT +I
Sbjct: 139 EEGLQIAEMLIKSNSVDVIVVDSVAALVPKAELDGEIGDTHVGLQARMMSQAMRKLTGAI 198

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+SK  ++FINQ+R KIGVMFGSPETT GG ALKFYSSVR+D+RR+ ++KD D++TG + 
Sbjct: 199 SKSKTTVIFINQIREKIGVMFGSPETTPGGRALKFYSSVRVDVRRIATLKDGDTVTGIRM 258

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           + K+VKNK+A PF+  EFD++   GI++  +L+DL V+  IV KSG+WFS+   RLGQGR
Sbjct: 259 KAKIVKNKIAPPFRIAEFDMLTTGGINYELDLLDLAVENKIVKKSGSWFSYGELRLGQGR 318

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338
           + SK+ L EN +I E I+  +    G+V
Sbjct: 319 DKSKVVLEENPDICEEIKQKVLAAQGVV 346


>gi|141813|gb|AAB59011.1| recA [Acholeplasma laidlawii]
          Length = 295

 Score =  367 bits (942), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 175/290 (60%), Positives = 228/290 (78%), Gaps = 2/290 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K +ALE AL QI++ +GKG+IM+LG        IE + SGS+ LDIALGIGG+P+GRI+E
Sbjct: 6   KQQALELALKQIEKQFGKGSIMKLGDGAD--HSIEAIPSGSIALDIALGIGGYPRGRIIE 63

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTL LH +A +QK GGT AF+DAEHALD  YA+ LGVDL NL++SQPDTGE
Sbjct: 64  VYGPESSGKTTLTLHAMASAQKQGGTVAFIDAEHALDPNYAKALGVDLDNLVLSQPDTGE 123

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL+I + L++SG++D+IVIDSVAAL P AEI GDM  +  G+QAR+MSQA+RK++  IS
Sbjct: 124 QALDIAEALIKSGSIDMIVIDSVAALVPEAEIAGDMSANHVGLQARMMSQAMRKMSGVIS 183

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S  + +FINQ+R K+GVMFG+PETT GG ALKF+SSVRL+IRR  +IK    + G ++ 
Sbjct: 184 KSNVVAIFINQIREKVGVMFGNPETTPGGRALKFFSSVRLEIRRAEAIKQGSEMIGIKSN 243

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
           VKVVK+K+A P K    DIMYG GIS  GE++DL V+ ++V+KSGAW++ 
Sbjct: 244 VKVVKSKVAPPLKTASIDIMYGTGISRSGEVLDLSVELNLVNKSGAWYNI 293


>gi|320527246|ref|ZP_08028432.1| protein RecA [Solobacterium moorei F0204]
 gi|320132437|gb|EFW24981.1| protein RecA [Solobacterium moorei F0204]
          Length = 350

 Score =  367 bits (942), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 182/331 (54%), Positives = 258/331 (77%), Gaps = 4/331 (1%)

Query: 4   RKEMNIV-DKSKALEA-ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +KE  +  DK   L A AL  I++ YGKG+IM+LG +  +   ++ + SGSL LD ALGI
Sbjct: 5   KKEKTVTADKRDQLLADALKAIEKEYGKGSIMRLGDRADV--SVDAIPSGSLALDSALGI 62

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+PKGRI+EIYGPESSGKTTLALH IA+ QK GG CAF+DAE+A+D +YA+KLGVD+  
Sbjct: 63  GGYPKGRIIEIYGPESSGKTTLALHAIAECQKQGGRCAFIDAENAIDPLYAKKLGVDIDE 122

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L++SQPD+GEQALEIT++L++SGA+D++VIDSVAAL P+AE++G+MG++  G+QARLMS+
Sbjct: 123 LILSQPDSGEQALEITEVLIKSGAIDLVVIDSVAALVPQAELDGEMGDASVGLQARLMSK 182

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKL   ++RS    +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+R+  ++K+
Sbjct: 183 AMRKLAGVMNRSNTTAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRKGEALKE 242

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
              + G+ T+VKVVKNK+A PFK    ++++G+GIS   E+I L V+  I++K+GAWFS+
Sbjct: 243 GSEVIGSATKVKVVKNKVAPPFKVAVVNMIFGQGISHIDEVISLAVENDIIEKAGAWFSY 302

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           KG++LGQG  + + +++ + E    I  L++
Sbjct: 303 KGEKLGQGFNSVREYMKNHPEFDAEITELVK 333


>gi|6694838|gb|AAF25423.1|AF214776_1 RecA protein [Arthrobacter sp. 'SMCC G964']
          Length = 260

 Score =  367 bits (942), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 170/257 (66%), Positives = 214/257 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IEV+ +GS+ LD+ALGIGG P+GR++EIYGPESSGKTT+ALH +A +Q+ GG  AF+DAE
Sbjct: 3   IEVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA KLGVD   LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIE
Sbjct: 63  HALDPDYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG+S  G+QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALK
Sbjct: 123 GDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALK 182

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+S+R+D+RR+ ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS  G +ID
Sbjct: 183 FYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQGISREGGIID 242

Query: 285 LGVKASIVDKSGAWFSF 301
           +GV+  I+ KSG+WF++
Sbjct: 243 MGVEHGIIKKSGSWFTY 259


>gi|134122760|dbj|BAF49678.1| RecA [Physcomitrella patens]
          Length = 460

 Score =  367 bits (942), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 182/331 (54%), Positives = 243/331 (73%), Gaps = 7/331 (2%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           ++  VD+ KALEAA+S I   +GKG++ +LGS G     +E   SG L LD+ALG GGFP
Sbjct: 94  QLQYVDRQKALEAAMSDINGSFGKGSVTRLGSAGGAL--VETFPSGCLTLDLALG-GGFP 150

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEI+GPESSGKTTLALH IA+ QK GG    VDAEH  D  Y++ LGVD+++L++ 
Sbjct: 151 KGRIVEIFGPESSGKTTLALHAIAEIQKKGGNAMLVDAEHCFDPYYSKALGVDVESLIVC 210

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GE ALE  D + RSGAVDIIVIDSV+ALTPRAEIEG++G    G+QARLMSQALRK
Sbjct: 211 QPDNGEMALETADRMCRSGAVDIIVIDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRK 270

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD---K 242
           ++++ +R+ C ++F+NQ+R KI VM+G+PE T+GG ALKF++S+RLDIR  G IK    +
Sbjct: 271 MSANAARANCTIIFLNQIRYKIAVMYGNPEVTSGGLALKFFASLRLDIRNTGKIKSPRGE 330

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           D I G + RV+V K+K++ P+KQ EFDI++GEGI   G L+D      +V + GAW+S+ 
Sbjct: 331 DDI-GIRARVRVQKSKVSRPYKQAEFDIIFGEGICKLGSLLDSAETVGVVVRKGAWYSYG 389

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
             RLGQGR+    FLR+  E+  +IE ++R+
Sbjct: 390 ETRLGQGRDKVVQFLRDYPEVCADIEKVVRE 420


>gi|54792182|emb|CAE54407.1| recombination-repair protein [Vibrio fluvialis]
 gi|58415469|emb|CAH57149.1| recA protein [Vibrio fluvialis]
          Length = 253

 Score =  367 bits (941), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 173/255 (67%), Positives = 214/255 (83%), Gaps = 2/255 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           I+ +Q+ G TCAF+DAEHALD +YAR+LGV +  LL+SQPDTGEQALEI D L RSGAVD
Sbjct: 59  ISAAQREGKTCAFIDAEHALDPVYARRLGVKIDELLVSQPDTGEQALEICDALARSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFK+  
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKEAN 238

Query: 268 FDIMYGEGISFFGEL 282
             IMYG+G +  GEL
Sbjct: 239 TQIMYGQGFNREGEL 253


>gi|162286675|gb|ABX83448.1| RecA [Acidovorax temperans]
          Length = 239

 Score =  367 bits (941), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 181/239 (75%), Positives = 213/239 (89%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           +VVS+GSLGLDIALG+GG P+GR++EIYGPESSGKTTL L  IA+ QK GGTCAFVDAEH
Sbjct: 1   QVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTTLTLQVIAEMQKQGGTCAFVDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA+KLGV L +LLISQPDTGEQALEI D LVRSGAVD+IV+DSVAALTP+AEIEG
Sbjct: 61  ALDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAALTPKAEIEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +MG++LPG+QARLMSQALRKLT++I ++ C ++FINQ+RMKIGVMFGSPETTTGGNALKF
Sbjct: 121 EMGDALPGLQARLMSQALRKLTATIKKTNCTVIFINQIRMKIGVMFGSPETTTGGNALKF 180

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           Y+SVRLDIRR G+IK  D   GN+T+VKVVKNK++ PFK  EFDI++GEGIS  GE+ID
Sbjct: 181 YASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIID 239


>gi|54792162|emb|CAE54397.1| recombination-repair protein [Vibrio ichthyoenteri]
 gi|58415522|emb|CAH57175.1| recA protein [Vibrio ichthyoenteri ATCC 700023]
          Length = 246

 Score =  367 bits (941), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 168/240 (70%), Positives = 207/240 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 7   VETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQRVGKTCAFIDAE 66

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE
Sbjct: 67  HALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEIE 126

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 127 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 186

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GEL+D
Sbjct: 187 FYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQILYGQGFNREGELVD 246


>gi|161788608|emb|CAP18004.2| DNA recombinase [Burkholderia contaminans]
          Length = 285

 Score =  367 bits (941), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 170/239 (71%), Positives = 212/239 (88%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P
Sbjct: 35  FIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVP 94

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           +AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTG
Sbjct: 95  KAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTG 154

Query: 220 GNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFF 279
           GNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  
Sbjct: 155 GNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQ 214

Query: 280 GELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLV 338
           GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ +R++ G+V
Sbjct: 215 GEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIRESLGVV 273


>gi|162286683|gb|ABX83452.1| RecA [Verminephrobacter sp. LT04-1]
          Length = 239

 Score =  367 bits (941), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 181/238 (76%), Positives = 213/238 (89%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGTCAFVDAEHA
Sbjct: 2   VVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKQGGTCAFVDAEHA 61

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YA+KLGV L +LLISQPDTGEQALEI D LVRSGAVD+IV+DSVAALTP+AEIEG+
Sbjct: 62  LDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAALTPKAEIEGE 121

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG++LPG+QARLMSQALRKLT++I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY
Sbjct: 122 MGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFY 181

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           +SVRLDIRR G+IK  D   GN+T+VKVVKNK++ PFK  EFDI++GEGIS  GE+ID
Sbjct: 182 ASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIID 239


>gi|304564533|gb|ADM45130.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564535|gb|ADM45131.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 261

 Score =  367 bits (941), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 172/252 (68%), Positives = 217/252 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE
Sbjct: 10  VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 69

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+
Sbjct: 70  HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 129

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 130 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 189

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D
Sbjct: 190 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 249

Query: 285 LGVKASIVDKSG 296
           +G    I++KSG
Sbjct: 250 IGASIDIIEKSG 261


>gi|223717671|emb|CAX46415.1| recombination-repair protein [Vibrio natriegens]
          Length = 243

 Score =  367 bits (941), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 168/241 (69%), Positives = 208/241 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+M
Sbjct: 61  DPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GEL+DLGV
Sbjct: 181 SVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGV 240

Query: 288 K 288
           K
Sbjct: 241 K 241


>gi|46199768|ref|YP_005435.1| recombinase A [Thermus thermophilus HB27]
 gi|47606740|sp|P61500|RECA_THET2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|46197395|gb|AAS81808.1| recA protein [Thermus thermophilus HB27]
          Length = 340

 Score =  366 bits (940), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 188/328 (57%), Positives = 252/328 (76%), Gaps = 3/328 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KALE AL  I++ +GKGA+M+LG      + ++V+ +GSL LD+ALGIGG P+GRIVE
Sbjct: 5   KRKALENALKAIEKEFGKGAVMRLGEMPK--QQVDVIPTGSLALDLALGIGGIPRGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPES GKTTLAL  IAQ+Q+ GG  AFVDAEHALD +YA++LGV +++LL+SQPDTGE
Sbjct: 63  IYGPESGGKTTLALTIIAQAQRRGGVAAFVDAEHALDPLYAQRLGVQVEDLLVSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI ++L RSGAVD+IV+DSVAAL PRAEIEG+MG+   G+QARLMSQALRKLT+ ++
Sbjct: 123 QALEIVELLARSGAVDVIVVDSVAALVPRAEIEGEMGDQHVGLQARLMSQALRKLTAVLA 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQT 250
           +S    +FINQ+R K+GV +G+PETT GG ALKFY+SVRLD+R+ G  IK  +   G + 
Sbjct: 183 KSNTAAIFINQVREKVGVTYGNPETTPGGRALKFYASVRLDVRKSGQPIKVGNEAVGVKV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++ E +I +G G+    +L+++ V A +++K+G+WFS+   RLGQG+
Sbjct: 243 RVKVVKNKLAPPFREAELEIYFGRGLDPVADLVNVAVAAGVIEKAGSWFSYGELRLGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338
           E +   LRE  E+ E I + + + AG V
Sbjct: 303 EKAAEALRERPELLEEIRTKVLERAGEV 330


>gi|289524800|emb|CBJ94456.1| recA protein [Vibrio sp. Rd 16.2]
          Length = 238

 Score =  366 bits (940), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 168/237 (70%), Positives = 206/237 (86%)

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVE+YGPESSGKTTL L  IA +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQ
Sbjct: 2   GRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFIDAEHALDPIYAQKLGVDIDALLVSQ 61

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKL
Sbjct: 62  PDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKL 121

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + 
Sbjct: 122 TGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVV 181

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
           GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +V+K+GAW+S+ G
Sbjct: 182 GNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKNKLVEKAGAWYSYNG 238


>gi|189219553|ref|YP_001940194.1| RecA/RadA recombinase [Methylacidiphilum infernorum V4]
 gi|189186411|gb|ACD83596.1| RecA/RadA recombinase [Methylacidiphilum infernorum V4]
          Length = 314

 Score =  366 bits (940), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 178/302 (58%), Positives = 231/302 (76%), Gaps = 2/302 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG   S  + IE + +G L +D ALG+GGFP+GRIVEIYGPESSGKTTLAL  IAQ+Q
Sbjct: 1   MRLGDDRSRLQ-IETIPTGCLVIDKALGVGGFPRGRIVEIYGPESSGKTTLALTVIAQAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG    +D EHALD  Y RKLGV++  LLISQPD+GE+AL I + L+RS AVD+IVID
Sbjct: 60  KMGGVGVIIDVEHALDPQYCRKLGVNMNELLISQPDSGEEALTIAETLIRSNAVDVIVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTPRAEIEG MG+++ G QARLMS ALRKLT+ IS++K + +F NQ+R KIGVMFG
Sbjct: 120 SVAALTPRAEIEGQMGDAVVGAQARLMSSALRKLTAQISKAKTVCIFTNQLRDKIGVMFG 179

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQTRVKVVKNKMASPFKQVEFDIM 271
           +PETT GG ALKFY+SVR+DIR++  +K  D ++ GN+T++KVVKNK+A PF + EFDI+
Sbjct: 180 NPETTPGGKALKFYASVRIDIRKLAQLKGTDGTVYGNRTKLKVVKNKVAPPFTECEFDIL 239

Query: 272 YGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLL 331
           Y EGIS  G LIDL ++  IV+K G+W  F+G +LGQGRE     L+ ++ +   +E+  
Sbjct: 240 YNEGISREGSLIDLAIEEQIVEKRGSWIYFEGTQLGQGREAVVSLLKTDVNLCAKLEAAA 299

Query: 332 RQ 333
           ++
Sbjct: 300 KE 301


>gi|162286677|gb|ABX83449.1| RecA [Acidovorax valerianellae]
          Length = 238

 Score =  366 bits (940), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 183/238 (76%), Positives = 212/238 (89%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GG CAFVDAEHA
Sbjct: 1   VVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKQGGQCAFVDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YA+KLGV L +LLISQPDTGEQALEI D LVRSGAVD+IVIDSVAALTP+AEIEG+
Sbjct: 61  LDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVIDSVAALTPKAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+SLPG+QARLMSQALRKLT++I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY
Sbjct: 121 MGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFY 180

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           +SVRLDIRR G+IK  D   GN+T+VKVVKNK++ PFK  EFDI++GEGIS  GE+ID
Sbjct: 181 ASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIID 238


>gi|162286681|gb|ABX83451.1| RecA [Verminephrobacter sp. LT02-1]
          Length = 239

 Score =  366 bits (940), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 181/239 (75%), Positives = 213/239 (89%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           +VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGTCAFVDAEH
Sbjct: 1   QVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKQGGTCAFVDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA+KLGV L +LLISQPDTGEQALEI D LVRSGAVD+I +DSVAALTP+AEIEG
Sbjct: 61  ALDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLVRSGAVDLIAVDSVAALTPKAEIEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +MG++LPG+QARLMSQALRKLT++I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKF
Sbjct: 121 EMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKF 180

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           Y+SVRLDIRR G+IK  D   GN+T+VKVVKNK++ PFK  EFDI++GEGIS  GE+ID
Sbjct: 181 YASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIID 239


>gi|297183093|gb|ADI19237.1| reca/rada recombinase [uncultured delta proteobacterium
           HF0200_14D13]
          Length = 322

 Score =  366 bits (940), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 181/294 (61%), Positives = 232/294 (78%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           VVS+G+LGLDIALGIGG+P+GRI+EIYGPESSGKTTLAL  IA+ QK GG  AF+DAEHA
Sbjct: 13  VVSAGNLGLDIALGIGGYPRGRIIEIYGPESSGKTTLALCAIAEVQKAGGVAAFIDAEHA 72

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD + A  LGV++ +LL++QPD GEQALEI + +VR G  DI+V+DSVAAL P+ E+EGD
Sbjct: 73  LDPVNASILGVNMDDLLVAQPDYGEQALEIAEQMVRIGKSDIVVVDSVAALVPKNELEGD 132

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+S  G+ ARLMSQALRKLT S+S+S  I VFINQ+R KIGV+FG+PETTTGGNALKFY
Sbjct: 133 MGDSHMGLHARLMSQALRKLTGSVSKSSTIFVFINQLRSKIGVVFGNPETTTGGNALKFY 192

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
           S++RLD+R+   IK  D + G++ +VKVVKNKMA PF+  EFD++YG+G+S  G L+D  
Sbjct: 193 STIRLDVRKTTQIKQGDEVRGHRVKVKVVKNKMAPPFRVTEFDLIYGQGVSQMGILLDYA 252

Query: 287 VKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           V A I+ KSG WFS+  +RLGQGR+N   +L EN E A +++  LR+   L+ +
Sbjct: 253 VNAEIIQKSGTWFSYGKERLGQGRDNCIKYLEENPEFAADLDQQLRRLHKLIPE 306


>gi|304564719|gb|ADM45223.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 261

 Score =  366 bits (939), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 175/263 (66%), Positives = 221/263 (84%), Gaps = 2/263 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH I
Sbjct: 1   KGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDI
Sbjct: 59  AEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDI 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+G
Sbjct: 119 IVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EF
Sbjct: 179 VMFGNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEF 238

Query: 269 DIMYGEGISFFGELIDLGVKASI 291
           DIMYGEGIS  G ++D+G    I
Sbjct: 239 DIMYGEGISREGSILDIGASIDI 261


>gi|179185119|gb|ACB78171.1| RecA [Vibrio gigantis]
 gi|179185140|gb|ACB78172.1| RecA [Vibrio crassostreae]
          Length = 241

 Score =  366 bits (939), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 171/239 (71%), Positives = 206/239 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +QK G TCAFVDAE
Sbjct: 3   VETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIE
Sbjct: 63  HALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 123 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALK 182

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           FY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GELI
Sbjct: 183 FYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELI 241


>gi|179185284|gb|ACB78177.1| RecA [Vibrio rarus]
          Length = 251

 Score =  366 bits (939), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 172/253 (67%), Positives = 214/253 (84%), Gaps = 2/253 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAS 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPIYAQKLGVNIDALLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELI 283
           MYG+G +  GELI
Sbjct: 239 MYGQGFNREGELI 251


>gi|6694832|gb|AAF25417.1|AF214770_1 RecA protein [Arthrobacter sp. 'SMCC ZAT013']
          Length = 260

 Score =  366 bits (939), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 170/257 (66%), Positives = 214/257 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAE
Sbjct: 3   IEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA KLGVD   LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEIE
Sbjct: 63  HALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG+S  G+QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALK
Sbjct: 123 GDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALK 182

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+S+R+D+RR+ ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS  G +ID
Sbjct: 183 FYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQGISREGGIID 242

Query: 285 LGVKASIVDKSGAWFSF 301
           +GV+  ++ KSG+WF++
Sbjct: 243 MGVEHGLIKKSGSWFTY 259


>gi|304564709|gb|ADM45218.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564731|gb|ADM45229.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 260

 Score =  366 bits (939), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 174/258 (67%), Positives = 220/258 (85%), Gaps = 2/258 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH I
Sbjct: 1   KGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDI
Sbjct: 59  AEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDI 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+G
Sbjct: 119 IVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EF
Sbjct: 179 VMFGNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEF 238

Query: 269 DIMYGEGISFFGELIDLG 286
           DIMYGEGIS  G ++D+G
Sbjct: 239 DIMYGEGISREGSILDIG 256


>gi|6694834|gb|AAF25419.1|AF214772_1 RecA protein [Arthrobacter sp. 'SMCC ZAT055']
          Length = 258

 Score =  366 bits (939), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 171/256 (66%), Positives = 213/256 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAE
Sbjct: 3   IEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA KLGVD   LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIE
Sbjct: 63  HALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG+S  G+QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALK
Sbjct: 123 GDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALK 182

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+S+R+D+RR+ ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS  G +ID
Sbjct: 183 FYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQGISREGGIID 242

Query: 285 LGVKASIVDKSGAWFS 300
           +GV+  I+ KSG+WF+
Sbjct: 243 MGVEHGIIKKSGSWFT 258


>gi|179185096|gb|ACB78170.1| RecA [Vibrio sp. RD 9.17]
          Length = 250

 Score =  365 bits (938), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 174/252 (69%), Positives = 212/252 (84%), Gaps = 2/252 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +
Sbjct: 1   IMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VI
Sbjct: 59  QKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVI 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAALTP+AEIEG+MG+S  G+QAR++ QA+RKLT ++ +S C+ +FINQ+RMKIGVMF
Sbjct: 119 DSVAALTPKAEIEGEMGDSHMGLQARMLXQAMRKLTGNLKQSNCMAIFINQIRMKIGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I+
Sbjct: 179 GNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQIL 238

Query: 272 YGEGISFFGELI 283
           YG+G +  GELI
Sbjct: 239 YGKGFNREGELI 250


>gi|179184889|gb|ACB78163.1| RecA [Vibrio breoganii]
          Length = 251

 Score =  365 bits (938), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 172/253 (67%), Positives = 214/253 (84%), Gaps = 2/253 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPIYAQKLGVNIDALLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELI 283
           MYG+G +  GELI
Sbjct: 239 MYGQGFNREGELI 251


>gi|313585590|gb|ADR70937.1| recombinase [Vibrio cholerae]
 gi|313585592|gb|ADR70938.1| recombinase [Vibrio cholerae]
 gi|313585594|gb|ADR70939.1| recombinase [Vibrio cholerae]
 gi|313585598|gb|ADR70941.1| recombinase [Vibrio cholerae]
 gi|313585600|gb|ADR70942.1| recombinase [Vibrio cholerae]
 gi|313585602|gb|ADR70943.1| recombinase [Vibrio cholerae]
 gi|313585604|gb|ADR70944.1| recombinase [Vibrio cholerae]
 gi|313585606|gb|ADR70945.1| recombinase [Vibrio cholerae]
 gi|313585608|gb|ADR70946.1| recombinase [Vibrio cholerae]
 gi|313585610|gb|ADR70947.1| recombinase [Vibrio cholerae]
          Length = 243

 Score =  365 bits (938), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 169/243 (69%), Positives = 209/243 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 1   VETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE
Sbjct: 61  HALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 121 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 180

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELID
Sbjct: 181 FYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELID 240

Query: 285 LGV 287
           LGV
Sbjct: 241 LGV 243


>gi|304564549|gb|ADM45138.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 261

 Score =  365 bits (938), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 174/263 (66%), Positives = 221/263 (84%), Gaps = 2/263 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++Q
Sbjct: 1   MRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVID
Sbjct: 59  KMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG
Sbjct: 119 SVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMY
Sbjct: 179 NPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMY 238

Query: 273 GEGISFFGELIDLGVKASIVDKS 295
           GEGIS  G ++D+G    I++KS
Sbjct: 239 GEGISREGSILDIGASIDIIEKS 261


>gi|304564417|gb|ADM45072.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 260

 Score =  365 bits (937), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 172/251 (68%), Positives = 216/251 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE
Sbjct: 10  VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 69

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+
Sbjct: 70  HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 129

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 130 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 189

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+++RLD+R+V +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D
Sbjct: 190 FYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 249

Query: 285 LGVKASIVDKS 295
           +G    I++KS
Sbjct: 250 IGASIDIIEKS 260


>gi|281410932|gb|ADA68874.1| recombination repair protein [Vibrio sp. MM5]
          Length = 240

 Score =  365 bits (937), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 164/240 (68%), Positives = 206/240 (85%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P GRIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL
Sbjct: 1   LPMGRIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALL 60

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+
Sbjct: 61  VSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAM 120

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D
Sbjct: 121 RKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGD 180

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GEL+DLGVK  +V+K+GAW+S+ G
Sbjct: 181 EVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKAGAWYSYNG 240


>gi|687759|gb|AAA62510.1| RecA [uncultured Gram-positive bacterium]
          Length = 319

 Score =  365 bits (937), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 186/303 (61%), Positives = 237/303 (78%), Gaps = 2/303 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL +I++ +GKG+IM LG        +E   SGS+ LD+ALG+GG+PKGRI+E
Sbjct: 19  RKAALDEALKRIEKNFGKGSIMVLGDNA--LTQVETYPSGSVKLDVALGVGGYPKGRIIE 76

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH +A+ QK GGT A++DAE+ALD  YA  LGV    LL+SQPDTGE
Sbjct: 77  IYGPESSGKTTLALHAVAEVQKAGGTAAYIDAENALDVKYAEALGVKKDELLLSQPDTGE 136

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q LEI D LV+SGAVDIIV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL  +++
Sbjct: 137 QGLEIADALVQSGAVDIIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGTLN 196

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           R+  + +FINQ+R KIGVMFG+PETT GG ALKFYS++RL++RR   IKD   +TGN T+
Sbjct: 197 RTGTVAIFINQIREKIGVMFGNPETTPGGRALKFYSTIRLEVRRSTQIKDGTDVTGNLTK 256

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PFK  E DIMYG+GIS  GE++DLG +  I+ K+GA++ +   ++GQGRE
Sbjct: 257 VKVVKNKVAPPFKVAEVDIMYGKGISQTGEILDLGAEQEIIRKAGAFYYYGDIKVGQGRE 316

Query: 312 NSK 314
            +K
Sbjct: 317 KAK 319


>gi|156069609|gb|ABU44717.1| RecA [Vibrio parahaemolyticus]
          Length = 243

 Score =  365 bits (937), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 169/243 (69%), Positives = 208/243 (85%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           L LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA
Sbjct: 1   LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           +KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  
Sbjct: 61  KKLGVDIDALLVSQPDTGEQALEICDALTRSGAIDVMVVDSVAALTPKAEIEGEMGDSHM 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD
Sbjct: 121 GLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 180

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           IRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V
Sbjct: 181 IRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLV 240

Query: 293 DKS 295
           +K+
Sbjct: 241 EKA 243


>gi|156069601|gb|ABU44713.1| RecA [Vibrio parahaemolyticus]
 gi|156069603|gb|ABU44714.1| RecA [Vibrio parahaemolyticus]
 gi|156069605|gb|ABU44715.1| RecA [Vibrio parahaemolyticus]
 gi|156069607|gb|ABU44716.1| RecA [Vibrio parahaemolyticus]
 gi|156069611|gb|ABU44718.1| RecA [Vibrio parahaemolyticus]
 gi|156069615|gb|ABU44720.1| RecA [Vibrio parahaemolyticus]
 gi|156069617|gb|ABU44721.1| RecA [Vibrio parahaemolyticus]
 gi|156069619|gb|ABU44722.1| RecA [Vibrio parahaemolyticus]
 gi|156069621|gb|ABU44723.1| RecA [Vibrio parahaemolyticus]
 gi|156069623|gb|ABU44724.1| RecA [Vibrio parahaemolyticus]
 gi|156069625|gb|ABU44725.1| RecA [Vibrio parahaemolyticus]
 gi|156069627|gb|ABU44726.1| RecA [Vibrio parahaemolyticus]
 gi|156069629|gb|ABU44727.1| RecA [Vibrio parahaemolyticus]
 gi|156069631|gb|ABU44728.1| RecA [Vibrio parahaemolyticus]
 gi|156069633|gb|ABU44729.1| RecA [Vibrio parahaemolyticus]
 gi|156069635|gb|ABU44730.1| RecA [Vibrio parahaemolyticus]
 gi|156069637|gb|ABU44731.1| RecA [Vibrio parahaemolyticus]
 gi|156069639|gb|ABU44732.1| RecA [Vibrio parahaemolyticus]
 gi|156069641|gb|ABU44733.1| RecA [Vibrio parahaemolyticus]
 gi|156069643|gb|ABU44734.1| RecA [Vibrio parahaemolyticus]
 gi|156069645|gb|ABU44735.1| RecA [Vibrio parahaemolyticus]
 gi|156069647|gb|ABU44736.1| RecA [Vibrio parahaemolyticus]
 gi|156069649|gb|ABU44737.1| RecA [Vibrio parahaemolyticus]
 gi|156069651|gb|ABU44738.1| RecA [Vibrio parahaemolyticus]
 gi|156069653|gb|ABU44739.1| RecA [Vibrio parahaemolyticus]
 gi|156069657|gb|ABU44741.1| RecA [Vibrio parahaemolyticus]
 gi|156069659|gb|ABU44742.1| RecA [Vibrio parahaemolyticus]
 gi|156069661|gb|ABU44743.1| RecA [Vibrio parahaemolyticus]
 gi|156069663|gb|ABU44744.1| RecA [Vibrio parahaemolyticus]
 gi|156069665|gb|ABU44745.1| RecA [Vibrio parahaemolyticus]
 gi|193221979|gb|ACF16354.1| RecA [Vibrio parahaemolyticus]
 gi|193221981|gb|ACF16355.1| RecA [Vibrio parahaemolyticus]
          Length = 243

 Score =  365 bits (937), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 169/243 (69%), Positives = 208/243 (85%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           L LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA
Sbjct: 1   LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           +KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  
Sbjct: 61  KKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHM 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD
Sbjct: 121 GLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 180

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           IRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V
Sbjct: 181 IRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLV 240

Query: 293 DKS 295
           +K+
Sbjct: 241 EKA 243


>gi|188996308|ref|YP_001930559.1| recA protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931375|gb|ACD66005.1| recA protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 339

 Score =  365 bits (936), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 184/333 (55%), Positives = 256/333 (76%), Gaps = 8/333 (2%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N+  K KALE+A+ QI++ YGKG++M L S+G   + +EV+ +GSL LDIA GIGG P
Sbjct: 4   EENLEAKKKALESAILQIEKRYGKGSLMTLSSEG--IKSVEVIPTGSLSLDIATGIGGVP 61

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR++EIYGPESSGKTTL LH IA++QK GG   F+DAEHA D  YA+ +GV+L  L+IS
Sbjct: 62  KGRVIEIYGPESSGKTTLTLHIIAEAQKKGGRAVFIDAEHAFDPKYAKAIGVNLDELIIS 121

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQA+EI + LVRS AVD+IVIDSVAAL P+AEIEGD+ +S  G+ ARLMS+A+R 
Sbjct: 122 QPDYGEQAIEIAETLVRSNAVDVIVIDSVAALVPKAEIEGDIEDSNVGLHARLMSKAMRV 181

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           L  ++++S   L+ INQ+R K+GVMFG+PETTTGG A+KF++ +R+++R+   IK     
Sbjct: 182 LKGAVNKSNTALILINQIREKVGVMFGNPETTTGGRAIKFFADMRMEVRK-SDIKTDGEK 240

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ- 304
            G++ +VKVVKNK+A PFK+ EFD++YGEGIS  GE++DLG +  I+ KSGAW+S+K + 
Sbjct: 241 VGSRVKVKVVKNKLAPPFKEAEFDVIYGEGISKEGEILDLGEELGIIKKSGAWYSYKDEN 300

Query: 305 ----RLGQGRENSKIFLRENIEIAENIESLLRQ 333
               +LGQG+E ++ FL++N E+ E +E ++++
Sbjct: 301 GEEIKLGQGKEKAREFLKQNKELTEKLEQIIKE 333


>gi|329667688|gb|AEB93636.1| RecA protein [Lactobacillus johnsonii DPC 6026]
          Length = 334

 Score =  365 bits (936), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 173/298 (58%), Positives = 236/298 (79%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  + SGSL LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 11  ISTIPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 70

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+
Sbjct: 71  NAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEID 130

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG+S  G+QARLMSQALRKL+ +IS++K I VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 131 GDMGDSHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGVMFGNPETTPGGRALK 190

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FYS++RL++RR   IK    + GN+ ++KVVKNK+A PFK  E DIMYG+GIS  GELID
Sbjct: 191 FYSTIRLEVRRAEQIKQGSDVIGNRVKLKVVKNKVAPPFKVAEVDIMYGKGISQTGELID 250

Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSL 342
           +     I+ K+G+W+S+   R+GQGREN+K +L E+ ++ E ++  +R+  G+ A ++
Sbjct: 251 MAADKDIIKKAGSWYSYGDDRIGQGRENAKQYLEEHPDVYEEVKEKVREAYGIDAKAI 308


>gi|156069655|gb|ABU44740.1| RecA [Vibrio parahaemolyticus]
          Length = 243

 Score =  365 bits (936), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 168/243 (69%), Positives = 208/243 (85%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           L LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA
Sbjct: 1   LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           +KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  
Sbjct: 61  KKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHM 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD
Sbjct: 121 GLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 180

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           IRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GEL+DLGVK  +V
Sbjct: 181 IRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLV 240

Query: 293 DKS 295
           +K+
Sbjct: 241 EKA 243


>gi|18412241|ref|NP_565198.1| DNA repair protein recA [Arabidopsis thaliana]
 gi|2500098|sp|Q39199|RECAC_ARATH RecName: Full=DNA repair protein recA homolog 1, chloroplastic;
           AltName: Full=Recombinase A homolog 1; Flags: Precursor
 gi|289208|gb|AAA61781.1| chloroplast DNA repair protein precursor [Arabidopsis thaliana]
 gi|3152570|gb|AAC17051.1| Match to nuclear-encoded chloroplast DNA repair protein (E. coli
           recA homolog) gb|L15229 [Arabidopsis thaliana]
 gi|15292903|gb|AAK92822.1| putative replicase [Arabidopsis thaliana]
 gi|21281181|gb|AAM45008.1| putative replicase [Arabidopsis thaliana]
 gi|332198076|gb|AEE36197.1| DNA repair protein recA-like 1 [Arabidopsis thaliana]
          Length = 439

 Score =  364 bits (935), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 180/326 (55%), Positives = 239/326 (73%), Gaps = 5/326 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
            +D+ KALEAA++ I   +GKG++ +LGS G     +E  SSG L LD+ALG GG PKGR
Sbjct: 80  FLDRQKALEAAMNDINSSFGKGSVTRLGSAGGAL--VETFSSGILTLDLALG-GGLPKGR 136

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTLALH IA+ QK GG    VDAEHA D  Y++ LGVD++NL++ QPD
Sbjct: 137 VVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPD 196

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GE ALE  D + RSGAVD+I +DSV+ALTPRAEIEG++G    G+QARLMSQALRK++ 
Sbjct: 197 NGEMALETADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSG 256

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--DSIT 246
           + S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++SVRL+IR  G IK    D   
Sbjct: 257 NASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSAGKIKSSKGDEDI 316

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G + RV+V K+K++ P+KQ EF+IM+GEG+S  G ++D      +V K G+W+S++ QRL
Sbjct: 317 GLRARVRVQKSKVSRPYKQAEFEIMFGEGVSKLGCVLDCAEIMEVVVKKGSWYSYEDQRL 376

Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332
           GQGRE +   LREN  + + IE  +R
Sbjct: 377 GQGREKALQHLRENPALQDEIEKKVR 402


>gi|13183726|gb|AAK15321.1|AF331800_1 RecA [Thermus thermophilus HB27]
          Length = 340

 Score =  364 bits (935), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 186/328 (56%), Positives = 250/328 (76%), Gaps = 3/328 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KALE AL  I++ +GKGA+M+LG      + ++V+ +GSL LD+ALGIGG P+GRIVE
Sbjct: 5   KRKALENALKAIEKEFGKGAVMRLGEMPK--QQVDVIPTGSLALDLALGIGGIPRGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPES GKTTL L  IAQ+Q+ GG  AFVDAEHALD +YA++LGV +++LL+SQPDTGE
Sbjct: 63  IYGPESGGKTTLGLTIIAQAQRRGGVAAFVDAEHALDPLYAQRLGVQVEDLLVSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI ++L RSGAVD+IV+DSVAAL PRAEIEG+MG+   G+QARLMSQALRKLT+ ++
Sbjct: 123 QALEIVELLARSGAVDVIVVDSVAALVPRAEIEGEMGDQHVGLQARLMSQALRKLTAVLA 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQT 250
           +S    +FINQ+R K+GV +G+PETT GG ALKFY+SVRLD+R+ G  IK  +     + 
Sbjct: 183 KSNTAAIFINQVREKVGVTYGNPETTPGGRALKFYASVRLDVRKSGQPIKVGNEAVAVKV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++ E +I +G G+    +L+++ V A +++K+G+WFS+   RLGQG+
Sbjct: 243 RVKVVKNKLAPPFREAELEIYFGRGLDPVADLVNVAVAAGVIEKAGSWFSYGELRLGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338
           E +   LRE  E+ E I + + + AG V
Sbjct: 303 EKAAEALRERPELLEEIRTKVLERAGEV 330


>gi|148793404|gb|ABR12766.1| recombinase A [Photobacterium angustum]
          Length = 236

 Score =  364 bits (935), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 170/236 (72%), Positives = 205/236 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L TIA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLETIAAAQRKGKTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+M
Sbjct: 61  DPIYAQKLGVDIDQLLVSQPDTGEQALEICDALARSGAVDLIVVDSVAALTPKAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GELI
Sbjct: 181 SVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKQAETQILYGQGFNRNGELI 236


>gi|166841|gb|AAA32855.1| replicase [Arabidopsis thaliana]
          Length = 438

 Score =  364 bits (935), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 180/326 (55%), Positives = 239/326 (73%), Gaps = 5/326 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
            +D+ KALEAA++ I   +GKG++ +LGS G     +E  SSG L LD+ALG GG PKGR
Sbjct: 79  FLDRQKALEAAMNDINSSFGKGSVTRLGSAGGAL--VETFSSGILTLDLALG-GGLPKGR 135

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTLALH IA+ QK GG    VDAEHA D  Y++ LGVD++NL++ QPD
Sbjct: 136 VVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPD 195

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GE ALE  D + RSGAVD+I +DSV+ALTPRAEIEG++G    G+QARLMSQALRK++ 
Sbjct: 196 NGEMALETADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSG 255

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--DSIT 246
           + S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++SVRL+IR  G IK    D   
Sbjct: 256 NASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSAGKIKSSKGDEDI 315

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G + RV+V K+K++ P+KQ EF+IM+GEG+S  G ++D      +V K G+W+S++ QRL
Sbjct: 316 GLRARVRVQKSKVSRPYKQAEFEIMFGEGVSKLGCVLDCAEIMEVVVKKGSWYSYEDQRL 375

Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332
           GQGRE +   LREN  + + IE  +R
Sbjct: 376 GQGREKALQHLRENPALQDEIEKKVR 401


>gi|227204159|dbj|BAH56931.1| AT1G79050 [Arabidopsis thaliana]
          Length = 448

 Score =  364 bits (935), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 180/326 (55%), Positives = 239/326 (73%), Gaps = 5/326 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
            +D+ KALEAA++ I   +GKG++ +LGS G     +E  SSG L LD+ALG GG PKGR
Sbjct: 80  FLDRQKALEAAMNDINSSFGKGSVTRLGSAGGAL--VETFSSGILTLDLALG-GGLPKGR 136

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTLALH IA+ QK GG    VDAEHA D  Y++ LGVD++NL++ QPD
Sbjct: 137 VVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPD 196

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GE ALE  D + RSGAVD+I +DSV+ALTPRAEIEG++G    G+QARLMSQALRK++ 
Sbjct: 197 NGEMALETADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSG 256

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--DSIT 246
           + S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++SVRL+IR  G IK    D   
Sbjct: 257 NASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSAGKIKSSKGDEDI 316

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G + RV+V K+K++ P+KQ EF+IM+GEG+S  G ++D      +V K G+W+S++ QRL
Sbjct: 317 GLRARVRVQKSKVSRPYKQAEFEIMFGEGVSKLGCVLDCAEIMEVVVKKGSWYSYEDQRL 376

Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332
           GQGRE +   LREN  + + IE  +R
Sbjct: 377 GQGREKALQHLRENPALQDEIEKKVR 402


>gi|196227999|ref|ZP_03126866.1| recA protein [Chthoniobacter flavus Ellin428]
 gi|196227402|gb|EDY21905.1| recA protein [Chthoniobacter flavus Ellin428]
          Length = 307

 Score =  364 bits (935), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 173/301 (57%), Positives = 238/301 (79%), Gaps = 3/301 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG+   +   +EV+ +G++ +D ALG+GGFP+GR+VE++GPESSGKTTL L  +AQ+Q
Sbjct: 1   MRLGADQKL--DVEVIPTGNILIDRALGVGGFPRGRVVEVFGPESSGKTTLTLTVVAQAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG  AF+D EHALD  YA+KLGV+L +LL+SQP +GE+AL I + LVRS A+D+IVID
Sbjct: 59  KRGGLAAFIDVEHALDPQYAKKLGVNLDDLLVSQPSSGEEALRICETLVRSNALDVIVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL  +AE+EG++G++  G QARLMS ALRKLTS IS+++ I +F NQ+R KIGVMFG
Sbjct: 119 SVAALVTKAELEGEIGDTTVGAQARLMSAALRKLTSLISKARTICIFTNQIREKIGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQTRVKVVKNKMASPFKQVEFDIM 271
           +PETT GG ALKFYSSVR+DIRR+G+IK  D ++TGN+T+VK+VKNK+A PF + EFDIM
Sbjct: 179 NPETTPGGKALKFYSSVRVDIRRIGAIKIGDGTVTGNRTKVKIVKNKVAPPFTEAEFDIM 238

Query: 272 YGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLL 331
           Y EGIS  G L+DL ++  IV+K G+W S+KG +L QGR+ +K  ++ +  + E +E+ +
Sbjct: 239 YNEGISSTGALLDLALEKGIVEKRGSWLSYKGNQLAQGRDAAKELIKNDTALYEELETAV 298

Query: 332 R 332
           +
Sbjct: 299 K 299


>gi|304564401|gb|ADM45064.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 259

 Score =  364 bits (935), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 174/257 (67%), Positives = 219/257 (85%), Gaps = 2/257 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA
Sbjct: 1   GSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           ++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDII
Sbjct: 59  EAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDII 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GV
Sbjct: 119 VIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETT GG ALKFY+++RLD+R+V +IK  + I G++TRVKVVKNK+A PFKQ EFD
Sbjct: 179 MFGNPETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFD 238

Query: 270 IMYGEGISFFGELIDLG 286
           IMYGEGIS  G ++D+G
Sbjct: 239 IMYGEGISREGSILDIG 255


>gi|179185081|gb|ACB78169.1| RecA [Vibrio sp. CECT 7225]
          Length = 251

 Score =  364 bits (935), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 173/253 (68%), Positives = 212/253 (83%), Gaps = 2/253 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRI E+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIXEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+ VRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYAXVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELI 283
           +YG+G +  GELI
Sbjct: 239 LYGKGFNREGELI 251


>gi|151400025|gb|ABS11128.1| RecA [Vibrio mimicus]
 gi|151400027|gb|ABS11129.1| RecA [Vibrio cholerae]
 gi|151400029|gb|ABS11130.1| RecA [Vibrio cholerae]
 gi|151400031|gb|ABS11131.1| RecA [Vibrio cholerae]
 gi|151400033|gb|ABS11132.1| RecA [Vibrio cholerae]
 gi|151400035|gb|ABS11133.1| RecA [Vibrio cholerae]
 gi|151400037|gb|ABS11134.1| RecA [Vibrio cholerae]
 gi|157493175|gb|ABV57953.1| RecA [Vibrio cholerae]
 gi|157493181|gb|ABV57956.1| RecA [Vibrio cholerae]
          Length = 246

 Score =  364 bits (934), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 168/242 (69%), Positives = 208/242 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 5   VETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAE 64

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE
Sbjct: 65  HALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 124

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 125 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 184

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELID
Sbjct: 185 FYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELID 244

Query: 285 LG 286
           LG
Sbjct: 245 LG 246


>gi|28864690|gb|AAO48937.1| recombinase A subunit [Erwinia chrysanthemi]
          Length = 245

 Score =  364 bits (934), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 173/246 (70%), Positives = 211/246 (85%), Gaps = 2/246 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   S+   +E +S+GSL LDIALG+GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGEDRSM--DVETISTGSLSLDIALGVGGLPMGRIVEIYGPESSGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQRGGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKI
Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ + + G++TRVKVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGEEVVGSETRVKVVKNKVAAPFKQAE 238

Query: 268 FDIMYG 273
           F IMYG
Sbjct: 239 FQIMYG 244


>gi|179185228|gb|ACB78175.1| RecA [Vibrio comitans]
          Length = 251

 Score =  364 bits (934), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 168/239 (70%), Positives = 206/239 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 13  VETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAE 72

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE
Sbjct: 73  HALDPIYAQKLGVNIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEIE 132

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 133 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 192

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           FY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  IMYG+G +  GELI
Sbjct: 193 FYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQIMYGQGFNREGELI 251


>gi|30266979|gb|AAP21598.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum]
          Length = 245

 Score =  364 bits (934), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 173/247 (70%), Positives = 210/247 (85%), Gaps = 2/247 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGEDRSM--NVEPISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKI
Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD + + G++TRVKVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVGSETRVKVVKNKVAAPFKQAE 238

Query: 268 FDIMYGE 274
           F IMYGE
Sbjct: 239 FQIMYGE 245


>gi|6694839|gb|AAF25424.1|AF214777_1 RecA protein [Arthrobacter sp. 'SMCC G965']
          Length = 258

 Score =  364 bits (934), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 170/256 (66%), Positives = 212/256 (82%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAE
Sbjct: 3   IEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA KLGVD   LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEIE
Sbjct: 63  HALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG+S  G+QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALK
Sbjct: 123 GDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALK 182

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+S+R+D+RR+ ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS  G +ID
Sbjct: 183 FYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQGISREGGIID 242

Query: 285 LGVKASIVDKSGAWFS 300
           +GV+  ++ KSG WF+
Sbjct: 243 MGVEHGLIKKSGPWFT 258


>gi|226533038|ref|NP_001148809.1| protein recA [Zea mays]
 gi|195622282|gb|ACG32971.1| protein recA [Zea mays]
 gi|238008650|gb|ACR35360.1| unknown [Zea mays]
          Length = 415

 Score =  364 bits (934), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 177/326 (54%), Positives = 240/326 (73%), Gaps = 5/326 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           +VD+ K L+AA++ I   +GKG++ +LGS G  F  +E   SG L LD ALG GG PKGR
Sbjct: 63  LVDRQKVLDAAMNDINNSFGKGSVTRLGSAGGAF--VETFPSGCLTLDFALG-GGLPKGR 119

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VE+YGPESSGKTTLALH IA+ QK GG    VDAEHA D  Y++ LGVD++NL++ QPD
Sbjct: 120 VVEVYGPESSGKTTLALHAIAEIQKLGGNAMLVDAEHAFDPAYSKALGVDIENLIVCQPD 179

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GE ALEI D + RSGA+D+I IDSV+ALTPRAEIEG++G    G+QARLMSQALRK++ 
Sbjct: 180 NGEMALEIADRMCRSGAIDLICIDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSG 239

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--DSIT 246
           + S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++SVRL+IR +G IK    D   
Sbjct: 240 NASKAGCTLMFLNQIRYKIGVFYGNPEVTSGGIALKFFASVRLEIRLIGKIKSAKGDEDV 299

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G + RV+V K+K++ P+KQ EF+I++GEG+S  G ++D      +V K G+W+S+K  RL
Sbjct: 300 GVKVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCVLDCAELMDVVAKKGSWYSYKDIRL 359

Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332
           GQGRE +  +LRE+    + IE ++R
Sbjct: 360 GQGREKALQYLRESPTTCDEIEKVVR 385


>gi|208659528|gb|ACI31194.1| RecA [Vibrio breoganii]
 gi|208659530|gb|ACI31195.1| RecA [Vibrio breoganii]
 gi|208659532|gb|ACI31196.1| RecA [Vibrio breoganii]
          Length = 246

 Score =  364 bits (934), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 168/239 (70%), Positives = 206/239 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 8   VETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAE 67

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE
Sbjct: 68  HALDPIYAQKLGVNIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEIE 127

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 128 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 187

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           FY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  IMYG+G +  GELI
Sbjct: 188 FYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQIMYGQGFNREGELI 246


>gi|269114893|ref|YP_003302656.1| RecA protein (Recombinase A) [Mycoplasma hominis]
 gi|268322518|emb|CAX37253.1| RecA protein (Recombinase A) [Mycoplasma hominis ATCC 23114]
          Length = 337

 Score =  364 bits (934), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 174/316 (55%), Positives = 240/316 (75%), Gaps = 2/316 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N+  +   +   L +I++ +GK A+M LG + SI    E  SSGSL +D ALGI G+PKG
Sbjct: 8   NLQKEKSIIAETLKEIEKKFGKEAVMILGEKPSIIP--ETFSSGSLTIDRALGINGWPKG 65

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EIYGPESSGKTTLALH IA+ QKTGG  AF+DAEH++D IYA+ LGVD+ NL++SQP
Sbjct: 66  RIIEIYGPESSGKTTLALHAIAEIQKTGGIAAFIDAEHSIDPIYAKNLGVDIDNLILSQP 125

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D+GEQALEI D L +SGA+ +IV+DSVAAL P AE+ G+M + + G QARLMS+ALRK+T
Sbjct: 126 DSGEQALEIVDTLSKSGAIGLIVVDSVAALVPEAELNGEMKDQVVGAQARLMSKALRKIT 185

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            S+S++K  ++FINQ+R KIGV+FG+PETTTGG ALKFYSS+RL++R++ ++ +   ITG
Sbjct: 186 GSLSKNKTTVIFINQIREKIGVIFGNPETTTGGRALKFYSSIRLEVRKIQNVTNNGDITG 245

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           NQ + KVVKNK+A+P+K  + DI++ +GIS   E+I+L  +  I+ K G+W+SF G+ + 
Sbjct: 246 NQIKCKVVKNKLAAPYKTAQIDIIFSKGISKELEIINLAEELGILVKKGSWYSFNGENIA 305

Query: 308 QGRENSKIFLRENIEI 323
           QG  N +  L+ N E+
Sbjct: 306 QGVLNLQFILQTNKEL 321


>gi|157493215|gb|ABV57973.1| RecA [Vibrio cholerae]
          Length = 244

 Score =  364 bits (934), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 168/242 (69%), Positives = 208/242 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 3   VETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE
Sbjct: 63  HALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 123 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 182

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELID
Sbjct: 183 FYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELID 242

Query: 285 LG 286
           LG
Sbjct: 243 LG 244


>gi|179185204|gb|ACB78174.1| RecA [Vibrio breoganii]
          Length = 247

 Score =  364 bits (934), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 168/239 (70%), Positives = 206/239 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 9   VETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAE 68

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE
Sbjct: 69  HALDPIYAQKLGVNIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEIE 128

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 129 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 188

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           FY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  IMYG+G +  GELI
Sbjct: 189 FYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQIMYGQGFNREGELI 247


>gi|304564489|gb|ADM45108.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 260

 Score =  364 bits (934), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 174/262 (66%), Positives = 220/262 (83%), Gaps = 2/262 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA
Sbjct: 1   GSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           ++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDII
Sbjct: 59  EAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDII 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GV
Sbjct: 119 VIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFD
Sbjct: 179 MFGNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFD 238

Query: 270 IMYGEGISFFGELIDLGVKASI 291
           IMYGEGIS  G ++D+G    I
Sbjct: 239 IMYGEGISREGSILDIGASIDI 260


>gi|295848051|gb|ADG44937.1| recombinase A [Vibrio cholerae]
          Length = 241

 Score =  364 bits (934), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 167/241 (69%), Positives = 207/241 (85%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           A+G GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   AVGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGA
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGA 240

Query: 298 W 298
           W
Sbjct: 241 W 241


>gi|304564673|gb|ADM45200.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 259

 Score =  363 bits (933), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 173/257 (67%), Positives = 219/257 (85%), Gaps = 2/257 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA
Sbjct: 1   GSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           ++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDII
Sbjct: 59  EAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDII 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GV
Sbjct: 119 VIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFD
Sbjct: 179 MFGNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFD 238

Query: 270 IMYGEGISFFGELIDLG 286
           IMYGEGIS  G ++D+G
Sbjct: 239 IMYGEGISREGSILDIG 255


>gi|226356955|ref|YP_002786695.1| recombinase A [Deinococcus deserti VCD115]
 gi|226318945|gb|ACO46941.1| Protein RecA (recombinase A) [Deinococcus deserti VCD115]
          Length = 355

 Score =  363 bits (933), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 185/318 (58%), Positives = 254/318 (79%), Gaps = 3/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +++KA+E A+SQI++ +GKG+IM+LG++  +   ++ VS+GSL LD+ALGIGG P+GR+ 
Sbjct: 17  ERTKAIETAMSQIEKAFGKGSIMKLGAESKL--DVQSVSTGSLSLDLALGIGGIPRGRVT 74

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPES GKTTLAL  +AQ+QK GGTCAF+DAEHALD +YAR LGV+   LL+SQPD G
Sbjct: 75  EIYGPESGGKTTLALSIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNG 134

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI ++LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+ +
Sbjct: 135 EQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAIL 194

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQ 249
           S++    +FINQ+R KIGVM+G+PETTTGG ALKFY+SVRLD+R++G  +K  +   GN 
Sbjct: 195 SKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIGQPVKLGNDAVGNT 254

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VK VKNK+A PFK+VE  +MYG+G     +L+ L     I+ K+G+++S+  +R+GQG
Sbjct: 255 VKVKSVKNKVAPPFKEVELTLMYGKGFDQLSDLVTLASDMDIIKKAGSFYSYGDERIGQG 314

Query: 310 RENSKIFLRENIEIAENI 327
           +E +  ++ E  E+ + I
Sbjct: 315 KEKAIAYIAERPEMEQEI 332


>gi|52630797|gb|AAU84866.1| RecA [Burkholderia phymatum STM815]
          Length = 231

 Score =  363 bits (933), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 170/231 (73%), Positives = 204/231 (88%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           GLDIALG+GG P+GR+VEIYGPESSGKTTL L   A+ QK GGT AF+DAEHALD  YA+
Sbjct: 1   GLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVGAEMQKLGGTAAFIDAEHALDIQYAQ 60

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
           KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG
Sbjct: 61  KLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPG 120

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
           +QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDI
Sbjct: 121 LQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDI 180

Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           RR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGE IS  GE+ID
Sbjct: 181 RRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGESISRQGEIID 231


>gi|55981787|ref|YP_145084.1| recombinase A [Thermus thermophilus HB8]
 gi|62287394|sp|Q5SHB2|RECA_THET8 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|1072968|pir||C55020 recombination protein recA - Thermus sp
 gi|458472|dbj|BAA04215.1| RecA protein [Thermus thermophilus]
 gi|55773200|dbj|BAD71641.1| RecA protein [Thermus thermophilus HB8]
          Length = 340

 Score =  363 bits (933), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 185/319 (57%), Positives = 247/319 (77%), Gaps = 3/319 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KALE AL  I++ +GKGA+M+LG      + ++V+ +GSL LD+ALGIGG P+GRIVE
Sbjct: 5   KRKALENALKAIEKEFGKGAVMRLGEMPK--QQVDVIPTGSLALDLALGIGGIPRGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPES GKTTLAL  IAQ+Q+ GG  AFVDAEHALD +YA++LGV +++LL+SQPDTGE
Sbjct: 63  IYGPESGGKTTLALTIIAQAQRRGGVAAFVDAEHALDPLYAQRLGVQVEDLLVSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI ++L RSGAVD+IV+DSVAAL PRAEIEG+MG+   G+QARLMSQALRKLT+ ++
Sbjct: 123 QALEIVELLARSGAVDVIVVDSVAALVPRAEIEGEMGDQHVGLQARLMSQALRKLTAVLA 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQT 250
           +S    +FINQ+R K+GV +G+PETT GG ALKFY+SVRLD+R+ G  IK  +   G + 
Sbjct: 183 KSNTAAIFINQVREKVGVTYGNPETTPGGRALKFYASVRLDVRKSGQPIKVGNEAVGVKV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++ E +I +G G+    +L+++ V A +++K+G+WFS+   RLGQG+
Sbjct: 243 RVKVVKNKLAPPFREAELEIYFGRGLDPVADLVNVAVAAGVIEKAGSWFSYGELRLGQGK 302

Query: 311 ENSKIFLRENIEIAENIES 329
           E +   LRE  E+ E I +
Sbjct: 303 EKAAEALRERPELLEEIRA 321


>gi|52630799|gb|AAU84867.1| RecA [Burkholderia phenazinium]
          Length = 230

 Score =  363 bits (933), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 170/230 (73%), Positives = 203/230 (88%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           GLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA 
Sbjct: 1   GLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAG 60

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
           KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG
Sbjct: 61  KLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPG 120

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
           +QARLMSQALRKLT +I R+ C+++FINQ+ MKIGVMFG+PETTTGGNALKFY+SVRLDI
Sbjct: 121 LQARLMSQALRKLTGTIKRTNCLVIFINQISMKIGVMFGNPETTTGGNALKFYASVRLDI 180

Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           RR+GSIK  D + GN+TRVKVVKNK+A PF++  FDI+YGEGIS  GE+I
Sbjct: 181 RRIGSIKKNDEVIGNETRVKVVKNKVAPPFREAIFDILYGEGISRQGEVI 230


>gi|218193384|gb|EEC75811.1| hypothetical protein OsI_12760 [Oryza sativa Indica Group]
 gi|222625431|gb|EEE59563.1| hypothetical protein OsJ_11852 [Oryza sativa Japonica Group]
          Length = 436

 Score =  363 bits (933), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 179/328 (54%), Positives = 239/328 (72%), Gaps = 5/328 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN     KAL+AA++ I   +GKG++ +LGS G  F  +E   SG L LD ALG GG PK
Sbjct: 83  MNNNVMQKALDAAMNDINSSFGKGSVTRLGSAGGAF--VETFPSGCLTLDFALG-GGLPK 139

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE+YGPESSGKTTLALH IA+ QK GG    VDAEHA D  Y++ LGVD++NL++ Q
Sbjct: 140 GRVVEVYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDIENLIVCQ 199

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GE ALEI D + RSGA+D+I IDSV+ALTPRAEIEG++G    G+QARLMSQALRK+
Sbjct: 200 PDNGEMALEIADRMCRSGAIDLICIDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKM 259

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--DS 244
           + + S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++SVRL+IR +G IK    D 
Sbjct: 260 SGNASKAGCTLMFLNQIRYKIGVFYGNPEVTSGGIALKFFASVRLEIRPIGKIKSAKGDE 319

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
             G + RV+V K+K++ P+KQ EF+I++GEG+S  G ++D      +V K G+W+S+K  
Sbjct: 320 DVGVKVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCVLDCAELMEVVAKKGSWYSYKEM 379

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLR 332
           RLGQGRE +  +LRE+  I + IE  +R
Sbjct: 380 RLGQGREKALQYLRESPTICDEIEKAVR 407


>gi|313585596|gb|ADR70940.1| recombinase [Vibrio cholerae]
          Length = 243

 Score =  363 bits (932), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 168/242 (69%), Positives = 208/242 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 1   VETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE
Sbjct: 61  HALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 121 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 180

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELID
Sbjct: 181 FYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELID 240

Query: 285 LG 286
           LG
Sbjct: 241 LG 242


>gi|23194263|gb|AAN15079.1| RecA protein [Vibrio cholerae]
 gi|99029089|gb|ABF60832.1| RecA [Vibrio cholerae]
 gi|99029091|gb|ABF60833.1| RecA [Vibrio cholerae]
 gi|99029093|gb|ABF60834.1| RecA [Vibrio cholerae]
 gi|99029095|gb|ABF60835.1| RecA [Vibrio cholerae]
 gi|99029097|gb|ABF60836.1| RecA [Vibrio cholerae]
 gi|99029099|gb|ABF60837.1| RecA [Vibrio cholerae]
 gi|99029101|gb|ABF60838.1| RecA [Vibrio cholerae]
 gi|99029103|gb|ABF60839.1| RecA [Vibrio cholerae]
 gi|99029105|gb|ABF60840.1| RecA [Vibrio cholerae]
 gi|99029107|gb|ABF60841.1| RecA [Vibrio cholerae]
 gi|99029109|gb|ABF60842.1| RecA [Vibrio cholerae]
 gi|99029111|gb|ABF60843.1| RecA [Vibrio cholerae]
 gi|99029113|gb|ABF60844.1| RecA [Vibrio cholerae]
 gi|99029115|gb|ABF60845.1| RecA [Vibrio cholerae]
 gi|99029117|gb|ABF60846.1| RecA [Vibrio cholerae]
 gi|99029119|gb|ABF60847.1| RecA [Vibrio cholerae]
 gi|99029121|gb|ABF60848.1| RecA [Vibrio cholerae]
 gi|99029123|gb|ABF60849.1| RecA [Vibrio cholerae]
 gi|99029125|gb|ABF60850.1| RecA [Vibrio cholerae]
 gi|99029127|gb|ABF60851.1| RecA [Vibrio cholerae]
          Length = 243

 Score =  363 bits (932), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 169/243 (69%), Positives = 208/243 (85%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           L LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA
Sbjct: 1   LSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           +KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  
Sbjct: 61  KKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHM 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD
Sbjct: 121 GLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 180

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           IRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V
Sbjct: 181 IRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMV 240

Query: 293 DKS 295
           +KS
Sbjct: 241 EKS 243


>gi|304564523|gb|ADM45125.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 258

 Score =  363 bits (932), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 170/250 (68%), Positives = 215/250 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE
Sbjct: 9   VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 68

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+
Sbjct: 69  HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 128

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 129 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 188

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D
Sbjct: 189 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 248

Query: 285 LGVKASIVDK 294
           +G    I++K
Sbjct: 249 IGASIDIIEK 258


>gi|208659534|gb|ACI31197.1| RecA [Vibrio breoganii]
          Length = 246

 Score =  363 bits (931), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 167/239 (69%), Positives = 206/239 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL +DIALG GG P GRIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 8   VETISTGSLSIDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAE 67

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE
Sbjct: 68  HALDPIYAQKLGVNIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEIE 127

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 128 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 187

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           FY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  IMYG+G +  GELI
Sbjct: 188 FYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQIMYGQGFNREGELI 246


>gi|179185172|gb|ACB78173.1| RecA [Vibrio breoganii]
          Length = 247

 Score =  363 bits (931), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 167/239 (69%), Positives = 206/239 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 9   VETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAE 68

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE
Sbjct: 69  HALDPIYAQKLGVNIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEIE 128

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 129 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 188

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           FY+SVRLDIRR G+IKD D + GN+TR++VVKNK+A+PFKQ E  IMYG+G +  GELI
Sbjct: 189 FYASVRLDIRRTGAIKDGDEVVGNETRIRVVKNKIAAPFKQAETQIMYGQGFNREGELI 247


>gi|162286673|gb|ABX83447.1| RecA [Acidovorax konjaci]
          Length = 239

 Score =  363 bits (931), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 179/238 (75%), Positives = 212/238 (89%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           VVS+GSLGLD+ALG+GG P+GR++EIYGPESSGKTTL L  IA+ QK  GTCAFVDAEHA
Sbjct: 2   VVSTGSLGLDVALGVGGLPRGRVIEIYGPESSGKTTLTLQVIAEMQKQNGTCAFVDAEHA 61

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YA+KLGV + +LLISQPDTGEQALEI D LVRSGAVD+IVIDSVAALTP+AEIEG+
Sbjct: 62  LDIQYAQKLGVHVPDLLISQPDTGEQALEIVDSLVRSGAVDLIVIDSVAALTPKAEIEGE 121

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG++LPG+QARLMSQALRKLT++I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY
Sbjct: 122 MGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFY 181

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           +SVRLDIRR G+IK  D   GN+T+VKVVKNK++ PFK  EFDI++GEGIS  GE+ID
Sbjct: 182 ASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIID 239


>gi|304564459|gb|ADM45093.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 259

 Score =  363 bits (931), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 173/261 (66%), Positives = 219/261 (83%), Gaps = 2/261 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++
Sbjct: 1   IMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVI
Sbjct: 59  QKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVI 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMF
Sbjct: 119 DSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIM
Sbjct: 179 GNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIM 238

Query: 272 YGEGISFFGELIDLGVKASIV 292
           YGEGIS  G ++D+G    I+
Sbjct: 239 YGEGISREGSILDIGASIDII 259


>gi|30266975|gb|AAP21596.1| recombinase A [Pectobacterium atrosepticum]
          Length = 245

 Score =  363 bits (931), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 172/247 (69%), Positives = 210/247 (85%), Gaps = 2/247 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKI
Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAE 238

Query: 268 FDIMYGE 274
           F IMYGE
Sbjct: 239 FQIMYGE 245


>gi|304564437|gb|ADM45082.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 259

 Score =  362 bits (930), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 174/261 (66%), Positives = 219/261 (83%), Gaps = 2/261 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA+
Sbjct: 1   SIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAE 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIV
Sbjct: 59  AQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVM
Sbjct: 119 IDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETT GG ALKFY+++RLD+R+V +IK  + I G++TRVKVVKNK+A PFKQ EFDI
Sbjct: 179 FGNPETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDI 238

Query: 271 MYGEGISFFGELIDLGVKASI 291
           MYGEGIS  G ++D+G    I
Sbjct: 239 MYGEGISREGSILDIGASIDI 259


>gi|289524264|ref|ZP_06441118.1| protein RecA [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502920|gb|EFD24084.1| protein RecA [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 382

 Score =  362 bits (930), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 187/360 (51%), Positives = 257/360 (71%), Gaps = 11/360 (3%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K+ ++  +   L+ A+S I+  +G+GAIM+LG  G     +EV+ +G L LD+ALG GG 
Sbjct: 3   KKESVKTREDILQQAISDIKSKFGEGAIMRLGDGG--VSSVEVIPTGILPLDVALGTGGL 60

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GRI+EI+GPE SGKTTLALH +A++QK GG  AF+DAEHALD   A  +GVD K+L I
Sbjct: 61  PRGRIIEIFGPEGSGKTTLALHPVAEAQKLGGVAAFIDAEHALDPSLAISVGVDTKSLFI 120

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD+GEQAL I D LVRSGAVDIIV+DSVAALTP+AEI+G +GE+  G+QARLMS ALR
Sbjct: 121 SQPDSGEQALYILDSLVRSGAVDIIVVDSVAALTPQAEIDGKIGETQVGLQARLMSYALR 180

Query: 185 KLTSSISRSKCILVFINQMRMKIGVM-FGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           +L +SIS+SKC++VFINQ+R +IG+  +G P ETTTGG ALKFYSSVR+++RR  SI   
Sbjct: 181 RLAASISKSKCVVVFINQLRAQIGMSGYGGPQETTTGGRALKFYSSVRIEVRRGKSITKG 240

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           DSI G++  +KVVKNK A PF+     ++YG GI     ++D+ +   ++ K G+W ++K
Sbjct: 241 DSIIGHELWIKVVKNKQAPPFRVAHASLIYGRGIPKAMAILDMALDMDVIKKRGSWLAYK 300

Query: 303 GQRLGQGRENSKIFLRENI----EIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G+ LGQG+E     + E      EIA+ ++S+L + AGLV    L  P    ++DA +++
Sbjct: 301 GETLGQGKEKVAQLMEEQPELMEEIAQEVKSILAETAGLVN---LSPPRYAKEEDASEEE 357


>gi|58415638|emb|CAH57233.1| recA protein [Vibrio rumoiensis]
          Length = 247

 Score =  362 bits (930), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 169/247 (68%), Positives = 211/247 (85%), Gaps = 2/247 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMKLGDNRTM--DVETISTGSLALDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGV++ +LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQRVGKTCAFIDAEHALDPIYAQKLGVNINDLLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FGSPETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGSPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGIS 277
           +YG+G +
Sbjct: 239 LYGKGFN 245


>gi|311110401|ref|ZP_07711798.1| protein RecA [Lactobacillus gasseri MV-22]
 gi|311065555|gb|EFQ45895.1| protein RecA [Lactobacillus gasseri MV-22]
          Length = 348

 Score =  362 bits (930), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 172/298 (57%), Positives = 236/298 (79%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  + SGSL LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 11  ISTIPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 70

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+
Sbjct: 71  NAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEID 130

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG+S  G+QARLMSQALRKL+ +IS++K I VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 131 GDMGDSHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGVMFGNPETTPGGRALK 190

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FYS++RL++RR   IK    + GN+ ++KVVKNK+A PFK  E DIMYG+GIS  GELID
Sbjct: 191 FYSTIRLEVRRAEQIKQGSDVIGNRVKLKVVKNKVAPPFKVAEVDIMYGKGISQTGELID 250

Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSL 342
           +     I+ K+G+W+S+   R+GQGREN+K +L E+ ++ + ++  +R+  G+ A ++
Sbjct: 251 MAADKDIIKKAGSWYSYGDDRIGQGRENAKQYLEEHPDVYDEVKEKVRKAYGIDAKAI 308


>gi|54792158|emb|CAE54395.1| recombination-repair protein [Vibrio cincinnatiensis]
 gi|58415425|emb|CAH57127.1| recA protein [Vibrio cincinnatiensis]
          Length = 246

 Score =  362 bits (930), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 166/240 (69%), Positives = 206/240 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVE++GPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 7   VETISTGSLSLDIALGAGGLPMGRIVEVFGPESSGKTTLTLELIASAQREGKTCAFIDAE 66

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE
Sbjct: 67  HALDPVYARKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 126

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 127 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 186

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GEL+D
Sbjct: 187 FYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELVD 246


>gi|162286689|gb|ABX83455.1| RecA [Acidovorax avenae subsp. avenae]
          Length = 238

 Score =  362 bits (930), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 178/238 (74%), Positives = 212/238 (89%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           VVS+GSLGLD+ALG+GG P+GR++EIYGPESSGKTTL L  IA+ QK  GTCAFVDAEHA
Sbjct: 1   VVSTGSLGLDVALGVGGLPRGRVIEIYGPESSGKTTLTLQVIAEMQKQNGTCAFVDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YA+KLGV + +LLISQPDTGEQALEI D LVRSGAVD+IV+DSVAALTP+AEIEG+
Sbjct: 61  LDIQYAQKLGVHVPDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAALTPKAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG++LPG+QARLMSQALRKLT++I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY
Sbjct: 121 MGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFY 180

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           +SVRLDIRR G+IK  D   GN+T+VKVVKNK++ PFK  EFDI++GEGIS  GE+ID
Sbjct: 181 ASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIID 238


>gi|29421226|gb|AAO62572.1| recombinase A [Pantoea agglomerans]
          Length = 243

 Score =  362 bits (930), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 171/245 (69%), Positives = 210/245 (85%), Gaps = 2/245 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I
Sbjct: 59  SAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVI 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           ++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGV
Sbjct: 119 IVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D++ G++TRVKVVKNK+A+PFKQ EF 
Sbjct: 179 MFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSETRVKVVKNKIAAPFKQAEFQ 238

Query: 270 IMYGE 274
           IMYGE
Sbjct: 239 IMYGE 243


>gi|157493179|gb|ABV57955.1| RecA [Vibrio cholerae]
 gi|157493213|gb|ABV57972.1| RecA [Vibrio cholerae]
          Length = 245

 Score =  362 bits (929), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 167/241 (69%), Positives = 207/241 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 5   VETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAE 64

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE
Sbjct: 65  HALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 124

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 125 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 184

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELID
Sbjct: 185 FYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELID 244

Query: 285 L 285
           L
Sbjct: 245 L 245


>gi|54792168|emb|CAE54400.1| recombination-repair protein [Vibrio diabolicus]
 gi|58415445|emb|CAH57137.1| recA protein [Vibrio diabolicus]
          Length = 246

 Score =  362 bits (929), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 165/240 (68%), Positives = 206/240 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 7   VETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAE 66

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE
Sbjct: 67  HALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIE 126

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 127 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 186

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GEL+D
Sbjct: 187 FYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELVD 246


>gi|304564407|gb|ADM45067.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 257

 Score =  362 bits (929), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 173/255 (67%), Positives = 217/255 (85%), Gaps = 2/255 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++
Sbjct: 1   IMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVI
Sbjct: 59  QKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVI 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMF
Sbjct: 119 DSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETT GG ALKFY+++RLD+R+V +IK  + I G++TRVKVVKNK+A PFKQ EFDIM
Sbjct: 179 GNPETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIM 238

Query: 272 YGEGISFFGELIDLG 286
           YGEGIS  G ++D+G
Sbjct: 239 YGEGISREGSILDIG 253


>gi|148793408|gb|ABR12768.1| recombinase A [Photobacterium leiognathi]
          Length = 236

 Score =  362 bits (929), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 168/236 (71%), Positives = 205/236 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L TIA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLETIAAAQRKGKTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+M
Sbjct: 61  DPIYAQKLGVDIDQLLVSQPDTGEQALEICDALARSGAVDLIVVDSVAALTPKAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ +  I+YG+G +  GEL+
Sbjct: 181 SVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKQADTQILYGQGFNRNGELV 236


>gi|29421228|gb|AAO62573.1| recombinase A [Pantoea agglomerans]
          Length = 243

 Score =  362 bits (929), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 170/245 (69%), Positives = 211/245 (86%), Gaps = 2/245 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRLGEARSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +Q+ G TCAF+DAEHALD +YA+KLGVD++NLL SQPDTGEQALEI D L RSGAVD+I
Sbjct: 59  SAQRKGKTCAFIDAEHALDPVYAKKLGVDIENLLCSQPDTGEQALEICDALARSGAVDVI 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           ++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGV
Sbjct: 119 IVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D++ G++TRVKVVKNK+A+PFKQ EF 
Sbjct: 179 MFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSETRVKVVKNKIAAPFKQAEFQ 238

Query: 270 IMYGE 274
           IMYG+
Sbjct: 239 IMYGK 243


>gi|6694851|gb|AAF25436.1|AF214789_1 RecA protein [Arthrobacter oxydans]
          Length = 254

 Score =  362 bits (929), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 170/254 (66%), Positives = 211/254 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAE
Sbjct: 1   IEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA KLGVD   LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIE
Sbjct: 61  HALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG+S  G+QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALK
Sbjct: 121 GDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALK 180

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+S+R+D+RR+ ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS  G +ID
Sbjct: 181 FYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQGISREGGIID 240

Query: 285 LGVKASIVDKSGAW 298
           +GV+  I+ KSG+W
Sbjct: 241 MGVEHGIIKKSGSW 254


>gi|304564507|gb|ADM45117.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 259

 Score =  362 bits (929), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 173/261 (66%), Positives = 219/261 (83%), Gaps = 2/261 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA+
Sbjct: 1   SIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAE 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIV
Sbjct: 59  AQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVM
Sbjct: 119 IDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDI
Sbjct: 179 FGNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDI 238

Query: 271 MYGEGISFFGELIDLGVKASI 291
           MYGEGIS  G ++D+G    I
Sbjct: 239 MYGEGISREGSILDIGASIDI 259


>gi|313585624|gb|ADR70954.1| recombinase A [Thermus filiformis]
          Length = 338

 Score =  362 bits (929), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 191/328 (58%), Positives = 253/328 (77%), Gaps = 2/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+LE  L  I++ +GKGAIM+LG      + ++V+ +GSL LD+ALGIGG P+GR++
Sbjct: 4   EKRKSLENTLKAIEKEFGKGAIMRLGEMPR--QQVDVIPTGSLALDLALGIGGIPRGRVI 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPES GKTTLAL  IAQ+QK GG  AFVDAEHALD  YA+KLGVD++NLL+SQPDTG
Sbjct: 62  EIYGPESGGKTTLALTIIAQAQKMGGLAAFVDAEHALDPTYAQKLGVDVENLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI ++L RSGAVD++V+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT+ +
Sbjct: 122 EQALEIVELLARSGAVDVVVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTAVL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++S    +FINQ+R K+GVM+G+PETT GG ALKFYSSVRLD+RR G IK  +   G + 
Sbjct: 182 AKSNTAAIFINQVREKVGVMYGNPETTPGGRALKFYSSVRLDVRRSGVIKQGNEAVGIKV 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF+Q E +I +G G+    +L+++ V A ++ KSG+W S+   RLGQGR
Sbjct: 242 KVKVVKNKLAPPFRQAELEIYFGRGLDPLMDLVNVAVAAEVIQKSGSWLSYGETRLGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338
           E +  FL+E+  + E I + + + A  V
Sbjct: 302 EKAADFLKEHPTLVEEIRARVLERASQV 329


>gi|295848059|gb|ADG44941.1| recombinase A [Vibrio cholerae]
          Length = 239

 Score =  362 bits (929), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 166/239 (69%), Positives = 205/239 (85%)

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           G GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++
Sbjct: 1   GAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNI 60

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
             LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++
Sbjct: 61  DELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARML 120

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+I
Sbjct: 121 SQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAI 180

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           K+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW
Sbjct: 181 KEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAW 239


>gi|6694808|gb|AAF25393.1|AF214746_1 RecA protein [Arthrobacter sp. 'SMCC G993']
          Length = 256

 Score =  362 bits (929), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 170/254 (66%), Positives = 211/254 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAE
Sbjct: 3   IEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA KLGVD   LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIE
Sbjct: 63  HALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG+S  G+QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALK
Sbjct: 123 GDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALK 182

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+S+R+D+RR+ ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS  G +ID
Sbjct: 183 FYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQGISREGGIID 242

Query: 285 LGVKASIVDKSGAW 298
           +GV+  I+ KSG+W
Sbjct: 243 MGVEHGIIKKSGSW 256


>gi|304564483|gb|ADM45105.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564517|gb|ADM45122.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 258

 Score =  362 bits (928), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 173/260 (66%), Positives = 218/260 (83%), Gaps = 2/260 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++
Sbjct: 1   IMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVI
Sbjct: 59  QKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVI 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMF
Sbjct: 119 DSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIM
Sbjct: 179 GNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIM 238

Query: 272 YGEGISFFGELIDLGVKASI 291
           YGEGIS  G ++D+G    I
Sbjct: 239 YGEGISREGSILDIGASIDI 258


>gi|625663|pir||JX0292 recombination protein recA - Thermus aquaticus (strain HB8)
          Length = 340

 Score =  362 bits (928), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 184/319 (57%), Positives = 247/319 (77%), Gaps = 3/319 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KALE AL  I++ +GKGA+M+LG      + ++V+ +GSL LD+ALGIGG P+GRIVE
Sbjct: 5   KRKALENALKAIEKEFGKGAVMRLGEMPK--QQVDVIPTGSLALDLALGIGGIPRGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPES GKTTLAL  IAQ+Q+ GG  AFVDAEHALD +YA++LGV +++LL+SQP+TGE
Sbjct: 63  IYGPESGGKTTLALTIIAQAQRRGGVAAFVDAEHALDPLYAQRLGVQVEDLLVSQPETGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI ++L RSGAVD+IV+DSVAAL PRAEIEG+MG+   G+QARLMSQALRKLT+ ++
Sbjct: 123 QALEIVELLARSGAVDVIVVDSVAALVPRAEIEGEMGDQHVGLQARLMSQALRKLTAVLA 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQT 250
           +S    +FINQ+R K+GV +G+PETT GG ALKFY+SVRLD+R+ G  IK  +   G + 
Sbjct: 183 KSNTAAIFINQVREKVGVTYGNPETTPGGRALKFYASVRLDVRKSGQPIKVGNEAVGVKV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++ E +I +G G+    +L+++ V A +++K+G+WFS+   RLGQG+
Sbjct: 243 RVKVVKNKLAPPFREAELEIYFGRGLDPVADLVNVAVAAGVIEKAGSWFSYGELRLGQGK 302

Query: 311 ENSKIFLRENIEIAENIES 329
           E +   LRE  E+ E I +
Sbjct: 303 EKAAEALRERPELLEEIRA 321


>gi|256026794|ref|ZP_05440628.1| recombinase A [Fusobacterium sp. D11]
 gi|289764790|ref|ZP_06524168.1| RecA protein [Fusobacterium sp. D11]
 gi|289716345|gb|EFD80357.1| RecA protein [Fusobacterium sp. D11]
          Length = 379

 Score =  362 bits (928), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 194/371 (52%), Positives = 265/371 (71%), Gaps = 13/371 (3%)

Query: 1   MDYRKEMNIVD--------KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGS 52
           M  +KE N  D        K KA++ A++ I + +G G IM+LG + S+   +E + +GS
Sbjct: 1   MAAKKEKNAPDAKITDKEGKEKAVKDAMAAITKGFGAGLIMKLGEKSSM--NVESIPTGS 58

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           + LDIALGIGG PKGRI+E+YG ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA
Sbjct: 59  INLDIALGIGGVPKGRIIEVYGAESSGKTTLALHIIAEAQKQGGTVAFIDAEHALDPVYA 118

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           + LGVD+  LLISQPD GEQALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M +   
Sbjct: 119 KALGVDIDELLISQPDYGEQALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQM 178

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QARLMS+ LRKLT ++++ K  ++FINQ+R KIGV +G   TTTGG ALKFYSSVRL+
Sbjct: 179 GLQARLMSKGLRKLTGNLNKYKTTMIFINQIREKIGVTYGPTTTTTGGKALKFYSSVRLE 238

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           ++++G++K  D   G++  VKV KNK+A PFK+  F+I+YG+GIS  GE+ID  V   ++
Sbjct: 239 VKKMGTVKQGDDPIGSEVIVKVTKNKVAPPFKEAAFEILYGKGISRIGEIIDAAVARDVI 298

Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
            K+G+WFSF+ Q +GQG+E  +  L  N E+   +E  L++    +A   +++    +K 
Sbjct: 299 VKAGSWFSFRDQSIGQGKEKVRAELETNPELLAQVEKDLKE---AIAKGPIEKKKKKSKK 355

Query: 353 DADKDDTDNVE 363
           +   DDTD  E
Sbjct: 356 EVASDDTDTDE 366


>gi|304564613|gb|ADM45170.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564643|gb|ADM45185.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564645|gb|ADM45186.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564647|gb|ADM45187.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564707|gb|ADM45217.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564711|gb|ADM45219.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 257

 Score =  361 bits (927), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 172/255 (67%), Positives = 217/255 (85%), Gaps = 2/255 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++
Sbjct: 1   IMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVI
Sbjct: 59  QKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVI 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMF
Sbjct: 119 DSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIM
Sbjct: 179 GNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIM 238

Query: 272 YGEGISFFGELIDLG 286
           YGEGIS  G ++D+G
Sbjct: 239 YGEGISREGSILDIG 253


>gi|117675759|emb|CAL69150.1| recombinase A [Agreia bicolorata]
          Length = 243

 Score =  361 bits (927), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 172/243 (70%), Positives = 203/243 (83%)

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTL LH IA +QK GG  AF+DAEHALD  YA+KLGVD+  LL+SQP
Sbjct: 1   RIVEIYGPESSGKTTLTLHAIANAQKAGGIAAFIDAEHALDPAYAQKLGVDIDALLVSQP 60

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI DMLVRSG++D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT
Sbjct: 61  DTGEQALEIADMLVRSGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLT 120

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
             +S +   ++FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++K+     G
Sbjct: 121 GGLSTTNTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKEGTDAVG 180

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+TRVKVVKNKMA PFKQ EFDI+YG GIS  G LID GV+  IV KSGAW++++G++LG
Sbjct: 181 NRTRVKVVKNKMAPPFKQAEFDILYGIGISREGSLIDFGVEHEIVRKSGAWYTYEGEQLG 240

Query: 308 QGR 310
           QG+
Sbjct: 241 QGK 243


>gi|30691915|gb|AAP33455.1| recombinase A [Pectobacterium atrosepticum]
          Length = 245

 Score =  361 bits (927), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 172/247 (69%), Positives = 209/247 (84%), Gaps = 2/247 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGFIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEF 238

Query: 269 DIMYGEG 275
            IMYGEG
Sbjct: 239 QIMYGEG 245


>gi|237745002|ref|ZP_04575483.1| RecA protein [Fusobacterium sp. 7_1]
 gi|260494779|ref|ZP_05814909.1| recombinase A [Fusobacterium sp. 3_1_33]
 gi|229432231|gb|EEO42443.1| RecA protein [Fusobacterium sp. 7_1]
 gi|260197941|gb|EEW95458.1| recombinase A [Fusobacterium sp. 3_1_33]
          Length = 379

 Score =  361 bits (927), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 194/371 (52%), Positives = 265/371 (71%), Gaps = 13/371 (3%)

Query: 1   MDYRKEMNIVD--------KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGS 52
           M  +KE N  D        K KA++ A++ I + +G G IM+LG + S+   +E + +GS
Sbjct: 1   MAAKKEKNAPDAKITDKEGKEKAVKDAMAAITKGFGAGLIMKLGEKSSM--NVESIPTGS 58

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           + LDIALGIGG PKGRI+E+YG ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA
Sbjct: 59  INLDIALGIGGVPKGRIIEVYGAESSGKTTLALHIIAEAQKQGGTVAFIDAEHALDPVYA 118

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           + LGVD+  LLISQPD GEQALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M +   
Sbjct: 119 KALGVDIDELLISQPDYGEQALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQM 178

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QARLMS+ LRKLT ++++ K  ++FINQ+R KIGV +G   TTTGG ALKFYSSVRL+
Sbjct: 179 GLQARLMSKGLRKLTGNLNKYKTTMIFINQIREKIGVTYGPTTTTTGGKALKFYSSVRLE 238

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           ++++G++K  D   G++  VKV KNK+A PFK+  F+I+YG+GIS  GE+ID  V   ++
Sbjct: 239 VKKMGTVKQGDDPIGSEVIVKVTKNKVAPPFKEAAFEILYGKGISRIGEIIDAAVARDVI 298

Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
            K+G+WFSF+ Q +GQG+E  +  L  N E+   +E  L++    +A   +++    +K 
Sbjct: 299 VKAGSWFSFRDQSIGQGKEKVRAELETNPELLAQVEKDLKE---AIAKGPIEKKKKKSKK 355

Query: 353 DADKDDTDNVE 363
           +   DDTD  E
Sbjct: 356 EVASDDTDTDE 366


>gi|224011577|ref|XP_002295563.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|209583594|gb|ACI64280.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 428

 Score =  361 bits (927), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 181/322 (56%), Positives = 248/322 (77%), Gaps = 6/322 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K  ALE  LS+I+R YG+G+I++LG    +   ++ + SGSL LD+ALG GG+PKGR++E
Sbjct: 69  KLSALEGVLSRIERNYGRGSIVKLGDADRMV--VDCIGSGSLTLDVALG-GGYPKGRVIE 125

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH +A++Q++GG  AFVDAEHALD  YA  LGVD+ +LL+SQPD+GE
Sbjct: 126 IYGPESSGKTTLALHALAEAQQSGGIAAFVDAEHALDPAYAAALGVDIDSLLVSQPDSGE 185

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
            AL+I D LVRS AVD+IV+DSVAAL PRAE+EGDM +   G+QARLMS+ALRK+TSS+S
Sbjct: 186 MALDIVDQLVRSAAVDVIVVDSVAALVPRAELEGDMSDMQVGLQARLMSKALRKITSSLS 245

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
            S+C ++F+NQ+R K+GV++GSPE T+GGNALKFY+SVRLD RR   + D     G + +
Sbjct: 246 LSQCTVIFLNQLRSKVGVIYGSPEVTSGGNALKFYASVRLDTRRREVLPDN---MGIRAK 302

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A+PFK +E DI++GEGI   G L+D  +   +V + G+W+S++     QGR 
Sbjct: 303 VKVVKNKVAAPFKVIELDILFGEGIDQMGCLLDAALDLDVVQRKGSWYSYQDSNFAQGRY 362

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
           N+ ++L+ N E+A+ +E  +R+
Sbjct: 363 NASVYLKGNAEVAKRMEKEVRE 384


>gi|304564603|gb|ADM45165.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564633|gb|ADM45180.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 256

 Score =  361 bits (927), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 172/255 (67%), Positives = 217/255 (85%), Gaps = 2/255 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++
Sbjct: 1   IMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVI
Sbjct: 59  QKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVI 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMF
Sbjct: 119 DSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIM
Sbjct: 179 GNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIM 238

Query: 272 YGEGISFFGELIDLG 286
           YGEGIS  G ++D+G
Sbjct: 239 YGEGISREGSILDIG 253


>gi|324985140|gb|ADY69168.1| recombinase A repair protein [Photobacterium halotolerans]
          Length = 238

 Score =  361 bits (927), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 167/231 (72%), Positives = 202/231 (87%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L TIA +Q+ G TCAF+DAE
Sbjct: 7   IETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLETIAAAQRKGKTCAFIDAE 66

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE
Sbjct: 67  HALDPIYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDLIVVDSVAALTPKAEIE 126

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 127 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 186

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275
           FY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ E  I+YG+G
Sbjct: 187 FYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKVAAPFKQAETQILYGQG 237


>gi|225462225|ref|XP_002271727.1| PREDICTED: similar to replicase [Vitis vinifera]
          Length = 415

 Score =  361 bits (926), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 176/326 (53%), Positives = 238/326 (73%), Gaps = 5/326 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
            +D+ KALEAA++ I   +GKG++ +LGS G     +E   SG L LD ALG GG PKGR
Sbjct: 61  FLDRQKALEAAMNDINSSFGKGSVTRLGSAGGAL--VETFPSGCLTLDFALG-GGLPKGR 117

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEIYGPESSGKTTLALH IA+ QK GG    VDAEHA D  Y++ LGVD++NL++ QPD
Sbjct: 118 IVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPD 177

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GE ALEI D + RSGA+D+I +DSV+ALTPRAEIEG++G    G+QARLMSQALRK++ 
Sbjct: 178 HGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSG 237

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--DSIT 246
           + S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++S+RL+IR +G IK    D   
Sbjct: 238 NASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASLRLEIRPIGKIKSSKGDEDI 297

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G + RV+V K+K++ P+KQ EF+I++GEG+S  G ++D      +V K G+W+S+   RL
Sbjct: 298 GLRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCILDCAELMDVVVKKGSWYSYGDNRL 357

Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332
           GQGR+ +  +LREN  +   IE ++R
Sbjct: 358 GQGRDRALQYLRENPLVCHEIEKIVR 383


>gi|6694810|gb|AAF25395.1|AF214748_1 RecA protein [Arthrobacter sp. 'SMCC ZAT004']
          Length = 256

 Score =  361 bits (926), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 169/254 (66%), Positives = 211/254 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAE
Sbjct: 3   IEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA KLGVD   LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEIE
Sbjct: 63  HALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG+S  G+QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALK
Sbjct: 123 GDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALK 182

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+S+R+D+RR+ ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS  G +ID
Sbjct: 183 FYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQGISREGGIID 242

Query: 285 LGVKASIVDKSGAW 298
           +GV+  ++ KSG+W
Sbjct: 243 MGVEHGLIKKSGSW 256


>gi|304564439|gb|ADM45083.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 257

 Score =  361 bits (926), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 170/248 (68%), Positives = 213/248 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE
Sbjct: 10  VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 69

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+
Sbjct: 70  HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 129

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 130 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 189

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+++RLD+R+V +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D
Sbjct: 190 FYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 249

Query: 285 LGVKASIV 292
           +G    I+
Sbjct: 250 IGASIDII 257


>gi|190411099|gb|ACE78304.1| RecA [Vibrio campbellii]
          Length = 247

 Score =  361 bits (926), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 166/239 (69%), Positives = 205/239 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 9   VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAE 68

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE
Sbjct: 69  HALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIE 128

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 129 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 188

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           FY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELI
Sbjct: 189 FYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELI 247


>gi|304564429|gb|ADM45078.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 254

 Score =  361 bits (926), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 172/254 (67%), Positives = 216/254 (85%), Gaps = 2/254 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++Q
Sbjct: 1   MRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVID
Sbjct: 59  KMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG
Sbjct: 119 SVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETT GG ALKFY+++RLD+R+V +IK  + I G++TRVKVVKNK+A PFKQ EFDIMY
Sbjct: 179 NPETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMY 238

Query: 273 GEGISFFGELIDLG 286
           GEGIS  G ++D+G
Sbjct: 239 GEGISREGSILDIG 252


>gi|30691941|gb|AAP33467.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum]
          Length = 244

 Score =  361 bits (926), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 172/246 (69%), Positives = 208/246 (84%), Gaps = 2/246 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGFIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKI
Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD + + G++TRVKVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVGSETRVKVVKNKVAAPFKQAE 238

Query: 268 FDIMYG 273
           F IMYG
Sbjct: 239 FKIMYG 244


>gi|296082805|emb|CBI21810.3| unnamed protein product [Vitis vinifera]
          Length = 384

 Score =  361 bits (926), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 176/326 (53%), Positives = 238/326 (73%), Gaps = 5/326 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
            +D+ KALEAA++ I   +GKG++ +LGS G     +E   SG L LD ALG GG PKGR
Sbjct: 30  FLDRQKALEAAMNDINSSFGKGSVTRLGSAGGAL--VETFPSGCLTLDFALG-GGLPKGR 86

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEIYGPESSGKTTLALH IA+ QK GG    VDAEHA D  Y++ LGVD++NL++ QPD
Sbjct: 87  IVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPD 146

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GE ALEI D + RSGA+D+I +DSV+ALTPRAEIEG++G    G+QARLMSQALRK++ 
Sbjct: 147 HGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSG 206

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--DSIT 246
           + S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++S+RL+IR +G IK    D   
Sbjct: 207 NASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASLRLEIRPIGKIKSSKGDEDI 266

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G + RV+V K+K++ P+KQ EF+I++GEG+S  G ++D      +V K G+W+S+   RL
Sbjct: 267 GLRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCILDCAELMDVVVKKGSWYSYGDNRL 326

Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332
           GQGR+ +  +LREN  +   IE ++R
Sbjct: 327 GQGRDRALQYLRENPLVCHEIEKIVR 352


>gi|22096049|sp|Q8RFY0|RECA_FUSNN RecName: Full=Protein RecA; AltName: Full=Recombinase A
          Length = 378

 Score =  361 bits (926), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 189/350 (54%), Positives = 259/350 (74%), Gaps = 5/350 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KA++ A++ I + +G G IM+LG + S+   +E + +GS+ LDIALGIGG PKGRI+E
Sbjct: 20  KEKAVKDAMAAITKGFGSGLIMKLGEKSSM--NVESIPTGSINLDIALGIGGVPKGRIIE 77

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYG ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGVD+  LLISQPD GE
Sbjct: 78  IYGAESSGKTTLALHVIAEAQKQGGTVAFIDAEHALDPVYAKALGVDIDELLISQPDYGE 137

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M +   G+QARLMS+ LRKLT +++
Sbjct: 138 QALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQMGLQARLMSKGLRKLTGNLN 197

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           + K  ++FINQ+R KIGV +G   TTTGG ALKFYSSVR++++++G++K  D   G++  
Sbjct: 198 KYKTTMIFINQIREKIGVTYGPTTTTTGGKALKFYSSVRMEVKKMGTVKQGDDPIGSEVI 257

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV KNK+A PFK+  F+I+YG+GIS  GE+ID  V   ++ K+G+WFSF+ Q +GQG+E
Sbjct: 258 VKVTKNKVAPPFKEAAFEILYGKGISKVGEIIDAAVAKDVIVKAGSWFSFRDQSIGQGKE 317

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
             +  L  N E+   +E  L++    +A   + +    +K +A  DDTD+
Sbjct: 318 KVRAELEINPELLAQVEKDLKE---AIAKGPVDKKKKKSKKEASSDDTDD 364


>gi|15828723|ref|NP_326083.1| recombinase A [Mycoplasma pulmonis UAB CTIP]
 gi|730485|sp|P29226|RECA_MYCPU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|520364|gb|AAA20406.1| sequence derived from overlapping PCR products [Mycoplasma
           pulmonis]
 gi|14089665|emb|CAC13425.1| RECOMBINATION PROTEIN RECA [Mycoplasma pulmonis]
          Length = 339

 Score =  360 bits (925), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 171/314 (54%), Positives = 238/314 (75%), Gaps = 2/314 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           K +++ + +I++ +G  +IM LG +      ++V SSGS  ++ ALGIGGFPKGRI+EI+
Sbjct: 15  KIIKSTIEEIEKKFGNESIMLLGQKEKC--DVDVFSSGSYAINSALGIGGFPKGRIIEIF 72

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTT+ALHTIA+ QK  G  AF+D EH++D +YA+ LG+D+ NLLISQPD+GEQA
Sbjct: 73  GPESSGKTTIALHTIAEIQKKNGFAAFIDVEHSIDPVYAKNLGIDIDNLLISQPDSGEQA 132

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI D+L +SG++D+IV+DSVAAL P AE+ G+M +   G+QARLMS+ALRK+T S+S++
Sbjct: 133 LEIVDILAKSGSIDLIVVDSVAALVPEAELNGEMKDQSIGLQARLMSKALRKITGSLSKN 192

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
           K  ++FINQ+R KIGV+FG+PETT GG ALKFY+S+RLD+R+  +I   + I+GNQ RVK
Sbjct: 193 KTSVIFINQVREKIGVVFGNPETTPGGRALKFYASIRLDVRKSTNIMLNNDISGNQIRVK 252

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VVKNK+A PFK  E +I++ +GI+ FGE+ DL +   ++ K GAWFS+ G  + QGR+  
Sbjct: 253 VVKNKLAPPFKIAETEIIFSKGINKFGEVADLALVHDVLQKKGAWFSYNGNNIAQGRQKL 312

Query: 314 KIFLRENIEIAENI 327
              L  N E+ E I
Sbjct: 313 IAQLESNNELFEEI 326


>gi|30691917|gb|AAP33456.1| recombinase A [Pectobacterium atrosepticum]
          Length = 254

 Score =  360 bits (925), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 171/248 (68%), Positives = 210/248 (84%), Gaps = 2/248 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+ M+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGSSMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEF 238

Query: 269 DIMYGEGI 276
            IMYGEG+
Sbjct: 239 QIMYGEGL 246


>gi|315021921|gb|ADT70828.1| recombinase A [Pectobacterium carotovorum]
          Length = 244

 Score =  360 bits (925), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 171/246 (69%), Positives = 209/246 (84%), Gaps = 2/246 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKI
Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAE 238

Query: 268 FDIMYG 273
           F IMYG
Sbjct: 239 FQIMYG 244


>gi|304564433|gb|ADM45080.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564435|gb|ADM45081.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 256

 Score =  360 bits (925), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 172/254 (67%), Positives = 216/254 (85%), Gaps = 2/254 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++Q
Sbjct: 1   MRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVID
Sbjct: 59  KMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG
Sbjct: 119 SVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETT GG ALKFY+++RLD+R+V +IK  + I G++TRVKVVKNK+A PFKQ EFDIMY
Sbjct: 179 NPETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMY 238

Query: 273 GEGISFFGELIDLG 286
           GEGIS  G ++D+G
Sbjct: 239 GEGISREGSILDIG 252


>gi|160947500|ref|ZP_02094667.1| hypothetical protein PEPMIC_01434 [Parvimonas micra ATCC 33270]
 gi|158446634|gb|EDP23629.1| hypothetical protein PEPMIC_01434 [Parvimonas micra ATCC 33270]
          Length = 381

 Score =  360 bits (925), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 198/358 (55%), Positives = 254/358 (70%), Gaps = 7/358 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL  AL +I++ +GKG IM++G    +   IE +S+G++ LDIALGIGG PKGRIV
Sbjct: 17  ERKKALSIALEKIEKDFGKGIIMRMGDAPKV--NIESISTGAMNLDIALGIGGIPKGRIV 74

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+SQK GG  AF+DAEHALD  YARKLGVD+ NLLISQPDTG
Sbjct: 75  EIYGPESSGKTTLTLHIIAESQKAGGVAAFIDAEHALDPEYARKLGVDVDNLLISQPDTG 134

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL I + LVRS  +D++++DSVAAL PRAEIEG+MG+S  G+ ARLMSQALRKL   I
Sbjct: 135 EQALAIVEALVRSSGIDLVIVDSVAALVPRAEIEGNMGDSHMGLHARLMSQALRKLAGII 194

Query: 191 SRSKCILVFINQMRMKIGVMF----GSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SI 245
           S+S   +VFINQ+R  I        G  ETTTGG ALKFY+SVR+DIRR   +K  D   
Sbjct: 195 SKSNTTVVFINQLRSNISTNPYAGGGPAETTTGGRALKFYASVRIDIRRAEQLKQGDGEP 254

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            G +T+VKVVKNKMA PFK  EFDI++GEGIS  G ++D+    +I+ KSGAW+S    +
Sbjct: 255 YGAKTKVKVVKNKMAPPFKTCEFDIIFGEGISKLGIIVDMAADKNIIKKSGAWYSCGDIK 314

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           LGQG+E +KI+L E+    E I+  + ++ G+  +       + T +  DK+  D+ E
Sbjct: 315 LGQGKEKAKIYLEEHPAFLEEIKEKIYKSYGIEYEKKDVPKEVETINLTDKEIEDSEE 372


>gi|6694852|gb|AAF25437.1|AF214790_1 RecA protein [Arthrobacter protophormiae]
          Length = 247

 Score =  360 bits (925), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 172/247 (69%), Positives = 207/247 (83%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           EV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEH
Sbjct: 1   EVIPTGSVALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVASAQRNGGIAAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA+KLGVD   LL+SQPDTGEQALEI DMLV SGA+DIIVIDSVAAL PRAEIEG
Sbjct: 61  ALDPEYAKKLGVDTDALLVSQPDTGEQALEIMDMLVGSGALDIIVIDSVAALVPRAEIEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +MG+S  G+QARLMSQALRK+T  +S SK   +FINQ+R KIGV FGSPETTTGG ALKF
Sbjct: 121 EMGDSHVGLQARLMSQALRKITGRLSASKTTAIFINQLREKIGVFFGSPETTTGGKALKF 180

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           Y+SVR+DIRR+ ++K+  +  GN+TR K+VKNKMA PFKQ EFDI+YG GIS  G LID+
Sbjct: 181 YASVRIDIRRIETLKEGTNPVGNRTRAKIVKNKMAPPFKQAEFDILYGHGISREGSLIDM 240

Query: 286 GVKASIV 292
           GV+ ++V
Sbjct: 241 GVEHNLV 247


>gi|167598959|gb|ABZ88504.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598961|gb|ABZ88505.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598963|gb|ABZ88506.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598965|gb|ABZ88507.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598967|gb|ABZ88508.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598969|gb|ABZ88509.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598971|gb|ABZ88510.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598973|gb|ABZ88511.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598975|gb|ABZ88512.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598977|gb|ABZ88513.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598979|gb|ABZ88514.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598981|gb|ABZ88515.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598983|gb|ABZ88516.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598985|gb|ABZ88517.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598987|gb|ABZ88518.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598989|gb|ABZ88519.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598991|gb|ABZ88520.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598993|gb|ABZ88521.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598995|gb|ABZ88522.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598997|gb|ABZ88523.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598999|gb|ABZ88524.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599001|gb|ABZ88525.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599003|gb|ABZ88526.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599005|gb|ABZ88527.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599007|gb|ABZ88528.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599009|gb|ABZ88529.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599011|gb|ABZ88530.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599013|gb|ABZ88531.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599015|gb|ABZ88532.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599017|gb|ABZ88533.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599019|gb|ABZ88534.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599021|gb|ABZ88535.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599023|gb|ABZ88536.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599025|gb|ABZ88537.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599027|gb|ABZ88538.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599029|gb|ABZ88539.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599031|gb|ABZ88540.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599033|gb|ABZ88541.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599035|gb|ABZ88542.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599037|gb|ABZ88543.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599039|gb|ABZ88544.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599041|gb|ABZ88545.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599043|gb|ABZ88546.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599045|gb|ABZ88547.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599047|gb|ABZ88548.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599049|gb|ABZ88549.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599051|gb|ABZ88550.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599053|gb|ABZ88551.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599055|gb|ABZ88552.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599057|gb|ABZ88553.1| recombinase A [Flavobacterium psychrophilum]
          Length = 252

 Score =  360 bits (925), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 174/251 (69%), Positives = 217/251 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +SSGSLGLD+ALG+GG+P+GR++EIYGPESSGKTTL LH IA++QK GG  AF+DAE
Sbjct: 2   VETISSGSLGLDLALGVGGYPRGRVIEIYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HA D  YA KLGVD++NL+ISQPD GEQALEI + L+RSGA+DI+VIDSVAALTP++EIE
Sbjct: 62  HAFDRSYAEKLGVDIENLIISQPDNGEQALEIAENLIRSGAIDIVVIDSVAALTPKSEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+ ARLMSQALRKLT +IS++KC + FINQ+R KIGVMFG+PETTTGGNALK
Sbjct: 122 GEMGDSKMGLHARLMSQALRKLTGTISKTKCTVFFINQLREKIGVMFGNPETTTGGNALK 181

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR   IKD +++ GN+T+VKVVKNK+A PFK  EFDIMYGEG+S  GE++D
Sbjct: 182 FYASVRLDIRRSTQIKDGENVLGNRTKVKVVKNKVAPPFKTAEFDIMYGEGVSKTGEILD 241

Query: 285 LGVKASIVDKS 295
           L V+  ++ K+
Sbjct: 242 LAVEFEVIRKA 252


>gi|30266991|gb|AAP21604.1| recombinase A [Pectobacterium wasabiae]
          Length = 245

 Score =  360 bits (925), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 171/246 (69%), Positives = 209/246 (84%), Gaps = 2/246 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKI
Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD + + G++TRVKVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVGSETRVKVVKNKVAAPFKQAE 238

Query: 268 FDIMYG 273
           F IM+G
Sbjct: 239 FQIMFG 244


>gi|54792186|emb|CAE54409.1| recombination-repair protein [Vibrio mimicus]
 gi|58415572|emb|CAH57200.1| recA protein [Vibrio mimicus]
          Length = 246

 Score =  360 bits (925), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 166/240 (69%), Positives = 206/240 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 7   VETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAE 66

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE
Sbjct: 67  HALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 126

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 127 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 186

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELID
Sbjct: 187 FYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELID 246


>gi|195953745|ref|YP_002122035.1| recombinase A [Hydrogenobaculum sp. Y04AAS1]
 gi|195933357|gb|ACG58057.1| recA protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 352

 Score =  360 bits (925), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 167/323 (51%), Positives = 242/323 (74%), Gaps = 1/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALEA L+Q+++ YGKGA+M + +     + + V+ +G L +D A G+GG P+G+I+
Sbjct: 4   EKKKALEATLTQVEKKYGKGAVMPMKAAYEK-QTVNVIPTGILSVDKASGVGGLPRGKII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPES+GKTTLAL+ IA++QK GG   F+DAEHALD  YA KLGV+L  + ISQPD G
Sbjct: 63  EIFGPESAGKTTLALYAIAEAQKQGGIALFIDAEHALDPKYAVKLGVNLDAMYISQPDYG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D  + S  VDIIV+DSVAAL P+ E+EG+MG++  G QARLMSQALRKL  + 
Sbjct: 123 EQALEIADAFINSNTVDIIVVDSVAALVPKDELEGEMGDAQVGKQARLMSQALRKLKGAT 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++S   L+FINQ+R KIG M+G+PETT GG ALKF++ +RL++R+ G IK  D+  G   
Sbjct: 183 NKSNTTLIFINQIREKIGQMYGNPETTPGGRALKFFADMRLEVRKTGDIKSGDNKIGYSA 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +V+VVKNK+A PF++ E+++ +GEG+    +L+++ ++  I+ KSG+W+S++  ++GQG+
Sbjct: 243 KVRVVKNKVAPPFQEGEYEVYFGEGVCKICDLVNVAIEMGIIQKSGSWYSYQDTKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           E  K FL EN ++A+ IE+ +RQ
Sbjct: 303 EQVKTFLNENKDVAKGIETKIRQ 325


>gi|30266987|gb|AAP21602.1| recombinase A [Pectobacterium betavasculorum]
          Length = 245

 Score =  360 bits (925), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 171/246 (69%), Positives = 209/246 (84%), Gaps = 2/246 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKI
Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAE 238

Query: 268 FDIMYG 273
           F IMYG
Sbjct: 239 FQIMYG 244


>gi|304564449|gb|ADM45088.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 252

 Score =  360 bits (925), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 169/242 (69%), Positives = 211/242 (87%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE
Sbjct: 9   VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 68

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+
Sbjct: 69  HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 128

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 129 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 188

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+++RLD+R+V +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D
Sbjct: 189 FYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 248

Query: 285 LG 286
           +G
Sbjct: 249 IG 250


>gi|304564405|gb|ADM45066.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564409|gb|ADM45068.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564443|gb|ADM45085.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 253

 Score =  360 bits (924), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 169/242 (69%), Positives = 211/242 (87%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE
Sbjct: 10  VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 69

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+
Sbjct: 70  HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 129

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 130 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 189

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+++RLD+R+V +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D
Sbjct: 190 FYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 249

Query: 285 LG 286
           +G
Sbjct: 250 IG 251


>gi|304564621|gb|ADM45174.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564623|gb|ADM45175.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564625|gb|ADM45176.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 254

 Score =  360 bits (924), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 171/254 (67%), Positives = 216/254 (85%), Gaps = 2/254 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++Q
Sbjct: 1   MRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVID
Sbjct: 59  KMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG
Sbjct: 119 SVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMY
Sbjct: 179 NPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMY 238

Query: 273 GEGISFFGELIDLG 286
           GEGIS  G ++D+G
Sbjct: 239 GEGISREGSILDIG 252


>gi|304564415|gb|ADM45071.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564445|gb|ADM45086.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564807|gb|ADM45267.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 254

 Score =  360 bits (924), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 169/242 (69%), Positives = 211/242 (87%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE
Sbjct: 10  VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 69

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+
Sbjct: 70  HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 129

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 130 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 189

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+++RLD+R+V +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D
Sbjct: 190 FYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 249

Query: 285 LG 286
           +G
Sbjct: 250 IG 251


>gi|304564485|gb|ADM45106.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564487|gb|ADM45107.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564513|gb|ADM45120.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564515|gb|ADM45121.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564519|gb|ADM45123.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 257

 Score =  360 bits (924), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 172/259 (66%), Positives = 217/259 (83%), Gaps = 2/259 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++Q
Sbjct: 1   MRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVID
Sbjct: 59  KMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG
Sbjct: 119 SVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMY
Sbjct: 179 NPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMY 238

Query: 273 GEGISFFGELIDLGVKASI 291
           GEGIS  G ++D+G    I
Sbjct: 239 GEGISREGSILDIGASIDI 257


>gi|19703882|ref|NP_603444.1| recombinase A [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|19714044|gb|AAL94743.1| RecA protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 381

 Score =  360 bits (924), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 189/350 (54%), Positives = 259/350 (74%), Gaps = 5/350 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KA++ A++ I + +G G IM+LG + S+   +E + +GS+ LDIALGIGG PKGRI+E
Sbjct: 23  KEKAVKDAMAAITKGFGSGLIMKLGEKSSM--NVESIPTGSINLDIALGIGGVPKGRIIE 80

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYG ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGVD+  LLISQPD GE
Sbjct: 81  IYGAESSGKTTLALHVIAEAQKQGGTVAFIDAEHALDPVYAKALGVDIDELLISQPDYGE 140

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M +   G+QARLMS+ LRKLT +++
Sbjct: 141 QALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQMGLQARLMSKGLRKLTGNLN 200

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           + K  ++FINQ+R KIGV +G   TTTGG ALKFYSSVR++++++G++K  D   G++  
Sbjct: 201 KYKTTMIFINQIREKIGVTYGPTTTTTGGKALKFYSSVRMEVKKMGTVKQGDDPIGSEVI 260

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV KNK+A PFK+  F+I+YG+GIS  GE+ID  V   ++ K+G+WFSF+ Q +GQG+E
Sbjct: 261 VKVTKNKVAPPFKEAAFEILYGKGISKVGEIIDAAVAKDVIVKAGSWFSFRDQSIGQGKE 320

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
             +  L  N E+   +E  L++    +A   + +    +K +A  DDTD+
Sbjct: 321 KVRAELEINPELLAQVEKDLKE---AIAKGPVDKKKKKSKKEASSDDTDD 367


>gi|304564543|gb|ADM45135.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564545|gb|ADM45136.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 257

 Score =  360 bits (924), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 169/248 (68%), Positives = 213/248 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE
Sbjct: 10  VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 69

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+
Sbjct: 70  HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 129

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 130 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 189

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D
Sbjct: 190 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 249

Query: 285 LGVKASIV 292
           +G    I+
Sbjct: 250 IGASIDII 257


>gi|29421224|gb|AAO62571.1| recombinase A [Pantoea ananatis]
          Length = 243

 Score =  360 bits (924), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 170/244 (69%), Positives = 209/244 (85%), Gaps = 2/244 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPE+SGKTTL L  IA
Sbjct: 1   GSIMRLGEARSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I
Sbjct: 59  AAQRKGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVI 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           ++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGV
Sbjct: 119 IVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D++ G++TRVKVVKNK+A+PFKQ EF 
Sbjct: 179 MFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSETRVKVVKNKIAAPFKQAEFQ 238

Query: 270 IMYG 273
           IMYG
Sbjct: 239 IMYG 242


>gi|62297620|sp|P61501|RECA_THETH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|414555|gb|AAA64935.1| RecA protein [Thermus thermophilus]
          Length = 340

 Score =  360 bits (924), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 184/319 (57%), Positives = 246/319 (77%), Gaps = 3/319 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KALE AL  I++ +GKGA+M+LG      + ++V+ +GSL LD+ALGIGG P+GRIVE
Sbjct: 5   KRKALENALKAIEKEFGKGAVMRLGEMPK--QQVDVIPTGSLALDLALGIGGIPRGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPES GKTTLAL  IAQ+Q+ GG  AFVDAEHALD +YA++LGV +++LL+SQPDTGE
Sbjct: 63  IYGPESGGKTTLALTIIAQAQRRGGVAAFVDAEHALDPLYAQRLGVQVEDLLVSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI ++L RSGAVD+IV+DSVAAL P AEIEG+MG+   G+QARLMSQALRKLT+ ++
Sbjct: 123 QALEIVELLARSGAVDVIVVDSVAALVPGAEIEGEMGDQHVGLQARLMSQALRKLTAVLA 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQT 250
           +S    +FINQ+R K+GV +G+PETT GG ALKFY+SVRLD+R+ G  IK  +   G + 
Sbjct: 183 KSNTAAIFINQVREKVGVTYGNPETTPGGRALKFYASVRLDVRKSGQPIKVGNEAVGVKV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++ E +I +G G+    +L+++ V A +++K+G+WFS+   RLGQG+
Sbjct: 243 RVKVVKNKLAPPFREAELEIYFGRGLDPVADLVNVAVAAGVIEKAGSWFSYGELRLGQGK 302

Query: 311 ENSKIFLRENIEIAENIES 329
           E +   LRE  E+ E I +
Sbjct: 303 EKAAEALRERPELLEEIRA 321


>gi|290795137|gb|ADD64583.1| RecA recombinase [Vibrio splendidus]
          Length = 242

 Score =  360 bits (924), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 170/244 (69%), Positives = 208/244 (85%), Gaps = 2/244 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D
Sbjct: 59  IAAAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAID 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAE 238

Query: 268 FDIM 271
             I+
Sbjct: 239 TQIL 242


>gi|304564411|gb|ADM45069.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564413|gb|ADM45070.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564423|gb|ADM45075.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564425|gb|ADM45076.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564427|gb|ADM45077.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564447|gb|ADM45087.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 255

 Score =  360 bits (923), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 169/242 (69%), Positives = 211/242 (87%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE
Sbjct: 10  VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 69

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+
Sbjct: 70  HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 129

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 130 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 189

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+++RLD+R+V +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D
Sbjct: 190 FYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 249

Query: 285 LG 286
           +G
Sbjct: 250 IG 251


>gi|304564627|gb|ADM45177.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564631|gb|ADM45179.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564635|gb|ADM45181.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564639|gb|ADM45183.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 255

 Score =  360 bits (923), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 171/254 (67%), Positives = 216/254 (85%), Gaps = 2/254 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++Q
Sbjct: 1   MRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVID
Sbjct: 59  KMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG
Sbjct: 119 SVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMY
Sbjct: 179 NPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMY 238

Query: 273 GEGISFFGELIDLG 286
           GEGIS  G ++D+G
Sbjct: 239 GEGISREGSILDIG 252


>gi|304564421|gb|ADM45074.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564441|gb|ADM45084.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 256

 Score =  360 bits (923), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 170/247 (68%), Positives = 212/247 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE
Sbjct: 10  VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 69

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+
Sbjct: 70  HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 129

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 130 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 189

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+++RLD+R+V +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D
Sbjct: 190 FYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 249

Query: 285 LGVKASI 291
           +G    I
Sbjct: 250 IGASIDI 256


>gi|304564735|gb|ADM45231.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 249

 Score =  360 bits (923), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 168/242 (69%), Positives = 211/242 (87%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE
Sbjct: 6   VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 65

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+
Sbjct: 66  HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 125

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 126 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 185

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D
Sbjct: 186 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 245

Query: 285 LG 286
           +G
Sbjct: 246 IG 247


>gi|304564547|gb|ADM45137.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564565|gb|ADM45146.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 250

 Score =  360 bits (923), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 168/242 (69%), Positives = 211/242 (87%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE
Sbjct: 6   VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 65

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+
Sbjct: 66  HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 125

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 126 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 185

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D
Sbjct: 186 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 245

Query: 285 LG 286
           +G
Sbjct: 246 IG 247


>gi|304564481|gb|ADM45104.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564491|gb|ADM45109.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564493|gb|ADM45110.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564495|gb|ADM45111.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564509|gb|ADM45118.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564511|gb|ADM45119.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564637|gb|ADM45182.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564779|gb|ADM45253.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564781|gb|ADM45254.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564783|gb|ADM45255.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564785|gb|ADM45256.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564787|gb|ADM45257.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564789|gb|ADM45258.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564791|gb|ADM45259.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564793|gb|ADM45260.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564795|gb|ADM45261.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564799|gb|ADM45263.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564801|gb|ADM45264.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 253

 Score =  360 bits (923), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 168/242 (69%), Positives = 211/242 (87%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE
Sbjct: 10  VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 69

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+
Sbjct: 70  HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 129

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 130 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 189

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D
Sbjct: 190 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 249

Query: 285 LG 286
           +G
Sbjct: 250 IG 251


>gi|52548224|gb|AAU82101.1| recombinase A [Pantoea ananatis]
          Length = 242

 Score =  360 bits (923), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 170/244 (69%), Positives = 209/244 (85%), Gaps = 2/244 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPE+SGKTTL L  IA
Sbjct: 1   GSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I
Sbjct: 59  AAQRKGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVI 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           ++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGV
Sbjct: 119 IVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D++ G++TRVKVVKNK+A+PFKQ EF 
Sbjct: 179 MFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSETRVKVVKNKIAAPFKQAEFQ 238

Query: 270 IMYG 273
           IMYG
Sbjct: 239 IMYG 242


>gi|304564797|gb|ADM45262.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564803|gb|ADM45265.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564805|gb|ADM45266.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 252

 Score =  360 bits (923), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 168/242 (69%), Positives = 211/242 (87%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE
Sbjct: 9   VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 68

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+
Sbjct: 69  HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 128

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 129 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 188

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D
Sbjct: 189 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 248

Query: 285 LG 286
           +G
Sbjct: 249 IG 250


>gi|304564503|gb|ADM45115.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564505|gb|ADM45116.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564649|gb|ADM45188.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564651|gb|ADM45189.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564653|gb|ADM45190.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564663|gb|ADM45195.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564665|gb|ADM45196.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564675|gb|ADM45201.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564681|gb|ADM45204.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564733|gb|ADM45230.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564745|gb|ADM45236.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564747|gb|ADM45237.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 256

 Score =  360 bits (923), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 171/254 (67%), Positives = 216/254 (85%), Gaps = 2/254 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++Q
Sbjct: 1   MRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVID
Sbjct: 59  KMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG
Sbjct: 119 SVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMY
Sbjct: 179 NPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMY 238

Query: 273 GEGISFFGELIDLG 286
           GEGIS  G ++D+G
Sbjct: 239 GEGISREGSILDIG 252


>gi|226357578|ref|YP_002787318.1| recombinase A [Deinococcus deserti VCD115]
 gi|226357690|ref|YP_002787429.1| recombinase A [Deinococcus deserti VCD115]
 gi|226319569|gb|ACO47564.1| putative recombinase A [Deinococcus deserti VCD115]
 gi|226319932|gb|ACO47925.1| putative recombinase A [Deinococcus deserti VCD115]
          Length = 344

 Score =  360 bits (923), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 192/344 (55%), Positives = 265/344 (77%), Gaps = 8/344 (2%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KAL+ A+SQI++ +GKG+IM+LG+   +   ++ +S+GSL LD+ALG+GG PKGR+
Sbjct: 3   TDQHKALQTAMSQIEKQFGKGSIMKLGADSKL--DVQAISTGSLSLDVALGVGGIPKGRV 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
            EIYGPES GKTTLAL  IAQSQK GGTCAF+DAEHALD +YAR LGV+  +LL+SQPD 
Sbjct: 61  TEIYGPESGGKTTLALSIIAQSQKAGGTCAFIDAEHALDPVYARALGVNTDDLLVSQPDN 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI ++L+RSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLTS 
Sbjct: 121 GEQALEIMELLIRSGAIDVVVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTSI 180

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG---SIKDKDSIT 246
           +S++    +FINQ+R KIGVM+G+PETTTGG ALKFY+SVRLD+R++G   ++ D  +++
Sbjct: 181 VSKTGTAAIFINQVREKIGVMYGNPETTTGGKALKFYASVRLDVRKMGGKSTMVDNVAVS 240

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
            +  +VK VKNK+A PFK+VE  + YG G     +L+ L     ++ K+G+++S+  +R+
Sbjct: 241 -HSVKVKTVKNKVAPPFKEVELTLRYGHGFDAMDDLVTLATTFEVIKKAGSFYSYGDERI 299

Query: 307 GQGRENSKIFLRENIEIAENI-ESLLRQNAGLVADSLLQEPAIN 349
           GQG+E +  FL E  ++  +I E +L Q  G    + L EPA++
Sbjct: 300 GQGKEKAIAFLSERPDLLADIRERVLAQMRGTPV-APLPEPALS 342


>gi|23194265|gb|AAN15080.1| RecA protein [Vibrio cholerae]
          Length = 240

 Score =  360 bits (923), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 167/240 (69%), Positives = 206/240 (85%)

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
           IALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLG
Sbjct: 1   IALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLG 60

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           V++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QA
Sbjct: 61  VNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQA 120

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           R++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR 
Sbjct: 121 RMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRT 180

Query: 237 GSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
           G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSG
Sbjct: 181 GAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSG 240


>gi|296329366|ref|ZP_06871866.1| recombination protein A [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296153486|gb|EFG94304.1| recombination protein A [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 381

 Score =  360 bits (923), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 188/350 (53%), Positives = 258/350 (73%), Gaps = 5/350 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KA++ A++ I + +G G IM+LG + S+   +E + +GS+ LDIALGIGG PKGRI+E
Sbjct: 23  KEKAVKDAMAAITKGFGSGLIMKLGEKSSM--NVESIPTGSINLDIALGIGGVPKGRIIE 80

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYG ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGVD+  LLISQPD GE
Sbjct: 81  IYGAESSGKTTLALHVIAEAQKQGGTVAFIDAEHALDPVYAKALGVDIDELLISQPDYGE 140

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M +   G+QARLMS+ LRKLT +++
Sbjct: 141 QALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQMGLQARLMSKGLRKLTGNLN 200

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           + K  ++FINQ+R KIGV +G   TTTGG ALKFYSSVR++++++G++K  D   G++  
Sbjct: 201 KYKTTMIFINQIREKIGVTYGPTTTTTGGKALKFYSSVRMEVKKMGTVKQGDDPIGSEVI 260

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV KNK+A PFK+  F+I+YG+GIS  GE+ID  V   ++ K+G+WFSF+ Q +GQG+E
Sbjct: 261 VKVTKNKVAPPFKEAAFEILYGKGISKVGEIIDAAVAKDVIVKAGSWFSFRDQSIGQGKE 320

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
             +  L  N E+   +E  L++    +A   + +    +K +   DDTD+
Sbjct: 321 KVRAELETNPELLAQVEKDLKE---AIAKGPVDKKKKKSKKEVSSDDTDD 367


>gi|304564527|gb|ADM45127.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 254

 Score =  360 bits (923), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 169/247 (68%), Positives = 212/247 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE
Sbjct: 8   VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 67

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+
Sbjct: 68  HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 127

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 128 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 187

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D
Sbjct: 188 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 247

Query: 285 LGVKASI 291
           +G    I
Sbjct: 248 IGASIDI 254


>gi|304564539|gb|ADM45133.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564541|gb|ADM45134.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564729|gb|ADM45228.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 251

 Score =  359 bits (922), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 168/242 (69%), Positives = 211/242 (87%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE
Sbjct: 6   VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 65

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+
Sbjct: 66  HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 125

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 126 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 185

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D
Sbjct: 186 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 245

Query: 285 LG 286
           +G
Sbjct: 246 IG 247


>gi|225847998|ref|YP_002728161.1| protein RecA [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643872|gb|ACN98922.1| protein RecA [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 340

 Score =  359 bits (922), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 179/334 (53%), Positives = 258/334 (77%), Gaps = 9/334 (2%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           +E ++  K KALE+A+ QI++ YGKG++M L S+G   + +EV+ SGS+ LDIA GIGG 
Sbjct: 3   EEKDLEAKKKALESAILQIEKRYGKGSLMTLSSEG--VKSVEVIPSGSISLDIATGIGGI 60

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGR++EIYGPESSGKTTL LH IA++QK GG   F+DAEHA D  YA+ +GV+L +L+I
Sbjct: 61  PKGRVIEIYGPESSGKTTLTLHIIAEAQKKGGKAVFIDAEHAFDPKYAKAIGVNLDDLII 120

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQA+EI + LVRS A+D+IVIDSVAAL P+AE+EGD+ +S  G+ ARLMS+A+R
Sbjct: 121 SQPDYGEQAIEIAETLVRSNAIDVIVIDSVAALVPKAELEGDIEDSNVGLHARLMSKAMR 180

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
            L  ++++S   L+ INQ+R K+GVMFG+PETTTGG A+KF++ +R+++R+   +K    
Sbjct: 181 VLKGAVNKSNTALILINQIREKVGVMFGNPETTTGGRAIKFFADMRMEVRK-SDLKTDGE 239

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
             G++ +VKVVKNK+A PFK+ EFD++YGEGIS  GE++DLG +  ++ KSG+W+S+K +
Sbjct: 240 KVGSRVKVKVVKNKLAPPFKEAEFDVIYGEGISKEGEILDLGEEIGVIKKSGSWYSYKDE 299

Query: 305 ------RLGQGRENSKIFLRENIEIAENIESLLR 332
                 +LGQGRE ++ FL++N ++ + IE+L++
Sbjct: 300 DTKEEIKLGQGREKAREFLKQNPDVTQKIENLIK 333


>gi|30691929|gb|AAP33461.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum]
          Length = 246

 Score =  359 bits (922), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 171/247 (69%), Positives = 209/247 (84%), Gaps = 2/247 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 2   KGFIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 60  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 120 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF
Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEF 239

Query: 269 DIMYGEG 275
            IM+GEG
Sbjct: 240 QIMFGEG 246


>gi|304564555|gb|ADM45141.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 252

 Score =  359 bits (922), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 168/242 (69%), Positives = 211/242 (87%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE
Sbjct: 8   VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 67

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+
Sbjct: 68  HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 127

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 128 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 187

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D
Sbjct: 188 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 247

Query: 285 LG 286
           +G
Sbjct: 248 IG 249


>gi|304564655|gb|ADM45191.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564657|gb|ADM45192.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564659|gb|ADM45193.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564661|gb|ADM45194.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564713|gb|ADM45220.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564715|gb|ADM45221.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564755|gb|ADM45241.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564757|gb|ADM45242.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564759|gb|ADM45243.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564761|gb|ADM45244.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564763|gb|ADM45245.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564765|gb|ADM45246.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564767|gb|ADM45247.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564769|gb|ADM45248.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564771|gb|ADM45249.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564773|gb|ADM45250.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564775|gb|ADM45251.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564777|gb|ADM45252.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 254

 Score =  359 bits (922), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 168/242 (69%), Positives = 211/242 (87%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE
Sbjct: 10  VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 69

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+
Sbjct: 70  HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 129

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 130 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 189

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D
Sbjct: 190 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 249

Query: 285 LG 286
           +G
Sbjct: 250 IG 251


>gi|304564529|gb|ADM45128.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 250

 Score =  359 bits (922), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 168/242 (69%), Positives = 211/242 (87%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE
Sbjct: 5   VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 64

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+
Sbjct: 65  HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 124

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 125 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 184

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D
Sbjct: 185 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 244

Query: 285 LG 286
           +G
Sbjct: 245 IG 246


>gi|23194275|gb|AAN15085.1| RecA protein [Vibrio cholerae]
          Length = 239

 Score =  359 bits (922), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 167/237 (70%), Positives = 204/237 (86%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +Y
Sbjct: 1   SLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S 
Sbjct: 61  AKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
            G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRL
Sbjct: 121 MGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRL 180

Query: 232 DIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           DIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK
Sbjct: 181 DIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVK 237


>gi|156069613|gb|ABU44719.1| RecA [Vibrio parahaemolyticus]
          Length = 243

 Score =  359 bits (922), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 167/243 (68%), Positives = 206/243 (84%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           L LDIALG GG P GRIVEIYGPESS KTTL L  IA +Q+ G TCAF+DAEHAL  +YA
Sbjct: 1   LSLDIALGAGGLPMGRIVEIYGPESSSKTTLTLELIAAAQREGKTCAFIDAEHALYPVYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           +KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  
Sbjct: 61  KKLGVDIDALLVSQPDTGEQALEICDALTRSGAIDVMVVDSVAALTPKAEIEGEMGDSHM 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD
Sbjct: 121 GLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 180

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           IRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V
Sbjct: 181 IRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLV 240

Query: 293 DKS 295
           +K+
Sbjct: 241 EKA 243


>gi|304564551|gb|ADM45139.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564553|gb|ADM45140.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564563|gb|ADM45145.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 254

 Score =  359 bits (922), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 168/242 (69%), Positives = 211/242 (87%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE
Sbjct: 9   VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 68

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+
Sbjct: 69  HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 128

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 129 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 188

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D
Sbjct: 189 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 248

Query: 285 LG 286
           +G
Sbjct: 249 IG 250


>gi|304564463|gb|ADM45095.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564465|gb|ADM45096.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564467|gb|ADM45097.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564469|gb|ADM45098.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564471|gb|ADM45099.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564473|gb|ADM45100.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564475|gb|ADM45101.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564477|gb|ADM45102.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564497|gb|ADM45112.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564499|gb|ADM45113.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564501|gb|ADM45114.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564567|gb|ADM45147.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564571|gb|ADM45149.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564573|gb|ADM45150.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564575|gb|ADM45151.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564577|gb|ADM45152.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564579|gb|ADM45153.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564581|gb|ADM45154.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564583|gb|ADM45155.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564585|gb|ADM45156.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564587|gb|ADM45157.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564589|gb|ADM45158.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564591|gb|ADM45159.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564593|gb|ADM45160.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564595|gb|ADM45161.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564597|gb|ADM45162.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564599|gb|ADM45163.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564601|gb|ADM45164.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564679|gb|ADM45203.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564683|gb|ADM45205.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564685|gb|ADM45206.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564689|gb|ADM45208.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564693|gb|ADM45210.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564695|gb|ADM45211.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564697|gb|ADM45212.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564699|gb|ADM45213.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564701|gb|ADM45214.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564703|gb|ADM45215.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564705|gb|ADM45216.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564717|gb|ADM45222.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564721|gb|ADM45224.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564723|gb|ADM45225.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564725|gb|ADM45226.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564727|gb|ADM45227.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564737|gb|ADM45232.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564739|gb|ADM45233.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564749|gb|ADM45238.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564751|gb|ADM45239.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564753|gb|ADM45240.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 255

 Score =  359 bits (922), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 168/242 (69%), Positives = 211/242 (87%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE
Sbjct: 10  VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 69

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+
Sbjct: 70  HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 129

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 130 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 189

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D
Sbjct: 190 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 249

Query: 285 LG 286
           +G
Sbjct: 250 IG 251


>gi|304564569|gb|ADM45148.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 246

 Score =  359 bits (922), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 168/242 (69%), Positives = 211/242 (87%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE
Sbjct: 3   VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+
Sbjct: 63  HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 123 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 182

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D
Sbjct: 183 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 242

Query: 285 LG 286
           +G
Sbjct: 243 IG 244


>gi|304564561|gb|ADM45144.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564605|gb|ADM45166.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564607|gb|ADM45167.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564609|gb|ADM45168.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564615|gb|ADM45171.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 253

 Score =  359 bits (922), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 168/242 (69%), Positives = 211/242 (87%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE
Sbjct: 9   VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 68

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+
Sbjct: 69  HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 128

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 129 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 188

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D
Sbjct: 189 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 248

Query: 285 LG 286
           +G
Sbjct: 249 IG 250


>gi|30266989|gb|AAP21603.1| recombinase A [Pectobacterium carotovorum subsp. odoriferum]
          Length = 245

 Score =  359 bits (922), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 170/247 (68%), Positives = 210/247 (85%), Gaps = 2/247 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKI
Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAE 238

Query: 268 FDIMYGE 274
           F IM+G+
Sbjct: 239 FQIMFGK 245


>gi|308190099|ref|YP_003923030.1| recombinase A [Mycoplasma fermentans JER]
 gi|307624841|gb|ADN69146.1| recombinase A [Mycoplasma fermentans JER]
          Length = 339

 Score =  359 bits (921), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 170/325 (52%), Positives = 242/325 (74%), Gaps = 1/325 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K + I +K K L+ AL +I + +G  AIM  G Q  I E IE   SGS  LD ALGIGG+
Sbjct: 4   KNIEIKNKDKELKEALEEITKKFGSEAIMLFG-QNEIEEKIETFPSGSYLLDNALGIGGY 62

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EIYGPESSGKTTL LH IA+ QK GG  A++DAEH+LD  YAR LG++L NL++
Sbjct: 63  PKGRIIEIYGPESSGKTTLCLHAIAEIQKQGGIAAYIDAEHSLDPNYARNLGINLDNLIL 122

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD+GEQAL+I D+L +SG++D+IV+DSVAAL P  E+ G M +S  G  ARLM++ LR
Sbjct: 123 SQPDSGEQALQIVDILAKSGSIDLIVVDSVAALVPEVELNGTMSDSSVGALARLMAKGLR 182

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           K+T +++++K  ++F+NQ+R KIGV+FG+PETTTGG ALKF+SSVR+++R+  SI +   
Sbjct: 183 KITGNLNKNKTAIIFVNQIREKIGVLFGNPETTTGGRALKFFSSVRIEVRKTTSIVEGKD 242

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           ITGN+ ++K+VKNK+A+P+K    +I++ +GI    ELI+L  +A++++K GAWF+++ +
Sbjct: 243 ITGNEVKIKIVKNKLAAPYKSFTTEIIFSKGIDKLNELINLATEANVIEKKGAWFAYQEK 302

Query: 305 RLGQGRENSKIFLRENIEIAENIES 329
            + QG++  K  L EN E  + IE+
Sbjct: 303 NIAQGKKALKDILLENPEFKKEIEN 327


>gi|30691927|gb|AAP33460.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum]
 gi|30691945|gb|AAP33469.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum]
          Length = 246

 Score =  359 bits (921), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 171/247 (69%), Positives = 209/247 (84%), Gaps = 2/247 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 2   KGFIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 60  ASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 120 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF
Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEF 239

Query: 269 DIMYGEG 275
            IM+GEG
Sbjct: 240 QIMFGEG 246


>gi|304564451|gb|ADM45089.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564453|gb|ADM45090.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564455|gb|ADM45091.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564457|gb|ADM45092.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564461|gb|ADM45094.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564557|gb|ADM45142.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564559|gb|ADM45143.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 256

 Score =  359 bits (921), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 169/247 (68%), Positives = 212/247 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE
Sbjct: 10  VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 69

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+
Sbjct: 70  HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 129

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 130 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 189

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D
Sbjct: 190 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 249

Query: 285 LGVKASI 291
           +G    I
Sbjct: 250 IGASIDI 256


>gi|763054|gb|AAA85501.1| RecA [Streptococcus pyogenes NZ131]
          Length = 326

 Score =  359 bits (921), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 171/287 (59%), Positives = 225/287 (78%), Gaps = 4/287 (1%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SGSL LDIA   GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD 
Sbjct: 3   SGSLALDIAWIAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDP 62

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
            YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+
Sbjct: 63  AYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGD 122

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SV
Sbjct: 123 SHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASV 182

Query: 230 RLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           RLD+R    IK     K +  G +T++KVVKNK+A PFK  E +IMYGEGIS  GEL+ +
Sbjct: 183 RLDVRGNNQIKGTGDQKIASIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKI 242

Query: 286 GVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
                I+ K+GAWFS+ G+++GQG EN+K +L ++ ++ + I+  +R
Sbjct: 243 ASDLDIIQKAGAWFSYNGEKIGQGSENAKRYLADHPQLFDEIDRKVR 289


>gi|157493219|gb|ABV57975.1| RecA [Vibrio cholerae]
          Length = 238

 Score =  359 bits (921), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 166/238 (69%), Positives = 205/238 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+M
Sbjct: 61  DPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDL
Sbjct: 181 SVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDL 238


>gi|297622935|ref|YP_003704369.1| recA protein [Truepera radiovictrix DSM 17093]
 gi|297164115|gb|ADI13826.1| recA protein [Truepera radiovictrix DSM 17093]
          Length = 359

 Score =  359 bits (921), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 179/312 (57%), Positives = 245/312 (78%), Gaps = 1/312 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + ++LE+ LSQI++ +GKGAIM+LG   S+ +   V+ +GS+ +D+ALG+GG P+GRI+E
Sbjct: 19  RRRSLESTLSQIEKQFGKGAIMRLGDDRSLLDQ-GVIPTGSMSVDLALGVGGVPRGRIIE 77

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPES GKTTL+LH IA++Q+ GG  AFVDAEHALD  YA+ LGVD   LL+SQPDTGE
Sbjct: 78  IYGPESGGKTTLSLHVIAEAQRLGGVAAFVDAEHALDPTYAKALGVDTDELLVSQPDTGE 137

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEIT++LVRSGAVD++V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKLT +++
Sbjct: 138 QALEITELLVRSGAVDVVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTGALA 197

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S+   +FINQ+R KIGVM+G+PETT GG ALKFY+SVRL++RR G +K      GNQ R
Sbjct: 198 KSRTTAIFINQIREKIGVMYGNPETTPGGRALKFYASVRLEVRRKGDVKSGADKVGNQVR 257

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV KNK+A PFK+ E +I++G+GI   G+LI +     ++ KSG+++ + G  +GQG+E
Sbjct: 258 VKVTKNKVAPPFKEAEVEILFGKGIDKLGDLITIATDLDLIQKSGSFYKYDGVTIGQGKE 317

Query: 312 NSKIFLRENIEI 323
            +  +L +N  +
Sbjct: 318 KAASYLLDNPHL 329


>gi|315021925|gb|ADT70830.1| recombinase A [Pectobacterium carotovorum]
          Length = 243

 Score =  358 bits (920), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 170/245 (69%), Positives = 208/245 (84%), Gaps = 2/245 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEF 238

Query: 269 DIMYG 273
            IMYG
Sbjct: 239 QIMYG 243


>gi|304564691|gb|ADM45209.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 250

 Score =  358 bits (920), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 168/242 (69%), Positives = 211/242 (87%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE
Sbjct: 9   VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 68

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+
Sbjct: 69  HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 128

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 129 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 188

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D
Sbjct: 189 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 248

Query: 285 LG 286
           +G
Sbjct: 249 IG 250


>gi|162286687|gb|ABX83454.1| RecA [Acidovorax anthurii]
          Length = 240

 Score =  358 bits (920), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 179/239 (74%), Positives = 212/239 (88%), Gaps = 1/239 (0%)

Query: 47  VVSSG-SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           VVS+G SLGLD+ALG+GG P+GR++EIYGPESSGKTTL L  IA+ QK  GTCAFVDAEH
Sbjct: 2   VVSTGASLGLDVALGVGGLPRGRVIEIYGPESSGKTTLTLQVIAEMQKQAGTCAFVDAEH 61

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA+KLGV + +LLISQPDTGEQALEI D LVRSGAVD+IVIDSVAALTP+AEIEG
Sbjct: 62  ALDIQYAQKLGVHVPDLLISQPDTGEQALEIVDSLVRSGAVDLIVIDSVAALTPKAEIEG 121

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +MG++LPG+QARLMSQALRKLT++I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKF
Sbjct: 122 EMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKF 181

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           Y+SVRLDIRR G+IK  D   GN+T+VKVVKNK++ PFK  EFDI++GEGIS  GE+ID
Sbjct: 182 YASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIID 240


>gi|89143251|emb|CAJ57520.1| recombinase A [Microbacterium keratanolyticum]
          Length = 246

 Score =  358 bits (920), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 168/245 (68%), Positives = 204/245 (83%)

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL++QPDTGEQ
Sbjct: 1   YGPESSGKTTLTLHAIANAQRNGGIAAFIDAEHALDPEYAKKLGVDIDALLVAQPDTGEQ 60

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEI DMLVRSG++D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  +++
Sbjct: 61  ALEIADMLVRSGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQ 120

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           +   ++FINQ+R KIGV FGSPETT GG ALKFY+SVR+DIRR+ ++KD     GN+TRV
Sbjct: 121 TNTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRMDIRRIETLKDGTEAVGNRTRV 180

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNKMA PFKQ EFDI+YG GIS  G LID GV+ +IV KSGAW+++ G +LGQG+EN
Sbjct: 181 KVVKNKMAPPFKQAEFDIIYGVGISREGSLIDFGVEHAIVKKSGAWYTYDGDQLGQGKEN 240

Query: 313 SKIFL 317
           ++ FL
Sbjct: 241 ARNFL 245


>gi|304564671|gb|ADM45199.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 256

 Score =  358 bits (920), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 170/254 (66%), Positives = 215/254 (84%), Gaps = 2/254 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++Q
Sbjct: 1   MRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGT AF+DAEHALD +YA+ LG ++++LL++QPDTGEQALEI + LVRSGAVDIIVID
Sbjct: 59  KMGGTGAFIDAEHALDPVYAKNLGANIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG
Sbjct: 119 SVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMY
Sbjct: 179 NPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMY 238

Query: 273 GEGISFFGELIDLG 286
           GEGIS  G ++D+G
Sbjct: 239 GEGISREGSILDIG 252


>gi|30691935|gb|AAP33464.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum]
          Length = 244

 Score =  358 bits (920), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 170/245 (69%), Positives = 207/245 (84%), Gaps = 2/245 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 2   KGVIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 60  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 120 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF
Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEF 239

Query: 269 DIMYG 273
            IMYG
Sbjct: 240 QIMYG 244


>gi|238810302|dbj|BAH70092.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 341

 Score =  358 bits (919), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 169/325 (52%), Positives = 242/325 (74%), Gaps = 1/325 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K + I +K K L+ AL +I + +G  AIM  G Q  I E IE   SGS  LD ALGIGG+
Sbjct: 6   KNIEIKNKDKELKEALEEITKKFGSEAIMLFG-QNEIEEKIETFPSGSYLLDNALGIGGY 64

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EIYGPESSGKTTL LH IA+ QK GG  A++DAEH+LD  YAR LG++L NL++
Sbjct: 65  PKGRIIEIYGPESSGKTTLCLHAIAEIQKQGGIAAYIDAEHSLDPNYARNLGINLDNLIL 124

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD+GEQAL+I D+L +SG++D+IV+DSVAAL P  E+ G M +S  G  ARLM++ LR
Sbjct: 125 SQPDSGEQALQIVDILAKSGSIDLIVVDSVAALVPEVELNGTMSDSSVGALARLMAKGLR 184

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           K+T +++++K  ++F+NQ+R KIGV+FG+PETTTGG A+KF+SSVR+++R+  SI +   
Sbjct: 185 KITGNLNKNKTAIIFVNQIREKIGVLFGNPETTTGGRAIKFFSSVRIEVRKTTSIVEGKD 244

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           ITGN+ ++K+VKNK+A+P+K    +I++ +GI    ELI+L  +A++++K GAWF+++ +
Sbjct: 245 ITGNEVKIKIVKNKLAAPYKSFTTEIIFSKGIDKLNELINLATEANVIEKKGAWFAYQEK 304

Query: 305 RLGQGRENSKIFLRENIEIAENIES 329
            + QG++  K  L EN E  + IE+
Sbjct: 305 NIAQGKKALKDILLENPEFKKEIEN 329


>gi|30691965|gb|AAP33474.1| recombinase A [Samsonia erythrinae]
          Length = 245

 Score =  358 bits (919), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 171/247 (69%), Positives = 206/247 (83%), Gaps = 2/247 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG IM+L    S  + +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGFIMRLAEDRS--KDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETT  GNALKFY+SVRLDIRR GSIKD + + GN+TRVKVVKNK+A+PFKQ EF
Sbjct: 179 VMFGNPETTNCGNALKFYASVRLDIRRTGSIKDGEEVVGNETRVKVVKNKVAAPFKQAEF 238

Query: 269 DIMYGEG 275
            I+YGEG
Sbjct: 239 QILYGEG 245


>gi|320335430|ref|YP_004172141.1| protein recA [Deinococcus maricopensis DSM 21211]
 gi|319756719|gb|ADV68476.1| Protein recA [Deinococcus maricopensis DSM 21211]
          Length = 348

 Score =  358 bits (919), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 188/318 (59%), Positives = 251/318 (78%), Gaps = 3/318 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA++ A+SQI++ +GKG+IM+LG++  +   ++ VS+GSL LD+ALG+GG PKGRI 
Sbjct: 4   DKMKAIQTAMSQIEKQFGKGSIMKLGAESKL--DVQAVSTGSLSLDLALGVGGIPKGRIT 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPES GKTTLAL  IAQSQK GGTCAF+DAEHALD +YAR LGV+   LL+SQPD G
Sbjct: 62  EIYGPESGGKTTLALSIIAQSQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI ++LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+ +
Sbjct: 122 EQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAVL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQ 249
           S++    +FINQ+R KIGVM+G+PETTTGG ALKFYSSVRLD+R++G   K  +    N 
Sbjct: 182 SKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYSSVRLDVRKIGQPTKVGNDAVANT 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VK VKNK+A+PFK+VE  ++YG+G     +L+ L     I+ K+G+++S+  +R+GQG
Sbjct: 242 VKVKTVKNKVAAPFKEVELALVYGKGFDQLSDLVTLASDMDIIKKAGSFYSYGDERIGQG 301

Query: 310 RENSKIFLRENIEIAENI 327
           +E +  ++ E  E+   I
Sbjct: 302 KEKAIAYIAERPEMEREI 319


>gi|25808131|gb|AAN74130.1| RecA [Helicobacter pylori]
          Length = 252

 Score =  358 bits (919), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 168/251 (66%), Positives = 210/251 (83%), Gaps = 1/251 (0%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+D
Sbjct: 2   EKIDSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFID 61

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AE
Sbjct: 62  AEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAE 121

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGN 221
           I+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGN
Sbjct: 122 IDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGN 181

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE 281
           ALKFY+SVR+DIRR+ ++K  +   GN+ + KVVKNK+A PF++ EFDIM+GEGIS  GE
Sbjct: 182 ALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGE 241

Query: 282 LIDLGVKASIV 292
           +ID GVK  IV
Sbjct: 242 IIDYGVKLDIV 252


>gi|319777397|ref|YP_004137048.1| protein reca [Mycoplasma fermentans M64]
 gi|318038472|gb|ADV34671.1| Protein RecA [Mycoplasma fermentans M64]
          Length = 339

 Score =  358 bits (919), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 169/325 (52%), Positives = 242/325 (74%), Gaps = 1/325 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K + I +K K L+ AL +I + +G  AIM  G Q  I E IE   SGS  LD ALGIGG+
Sbjct: 4   KNIEIKNKDKELKEALEEITKKFGSEAIMLFG-QNEIEEKIETFPSGSYLLDNALGIGGY 62

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EIYGPESSGKTTL LH IA+ QK GG  A++DAEH+LD  YAR LG++L NL++
Sbjct: 63  PKGRIIEIYGPESSGKTTLCLHAIAEIQKQGGIAAYIDAEHSLDPNYARNLGINLDNLIL 122

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD+GEQAL+I D+L +SG++D+IV+DSVAAL P  E+ G M +S  G  ARLM++ LR
Sbjct: 123 SQPDSGEQALQIVDILAKSGSIDLIVVDSVAALVPEVELNGTMSDSSVGALARLMAKGLR 182

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           K+T +++++K  ++F+NQ+R KIGV+FG+PETTTGG A+KF+SSVR+++R+  SI +   
Sbjct: 183 KITGNLNKNKTAIIFVNQIREKIGVLFGNPETTTGGRAIKFFSSVRIEVRKTTSIVEGKD 242

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           ITGN+ ++K+VKNK+A+P+K    +I++ +GI    ELI+L  +A++++K GAWF+++ +
Sbjct: 243 ITGNEVKIKIVKNKLAAPYKSFTTEIIFSKGIDKLNELINLATEANVIEKKGAWFAYQEK 302

Query: 305 RLGQGRENSKIFLRENIEIAENIES 329
            + QG++  K  L EN E  + IE+
Sbjct: 303 NIAQGKKALKDILLENPEFKKEIEN 327


>gi|290795143|gb|ADD64586.1| RecA recombinase [Vibrio sp. FALF75]
          Length = 229

 Score =  358 bits (919), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 166/229 (72%), Positives = 199/229 (86%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +QK G TCAFVDAEH
Sbjct: 1   ETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIEG
Sbjct: 61  ALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKF
Sbjct: 121 EMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKF 180

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           Y+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I+YG+
Sbjct: 181 YASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGK 229


>gi|297624371|ref|YP_003705805.1| recA protein [Truepera radiovictrix DSM 17093]
 gi|297165551|gb|ADI15262.1| recA protein [Truepera radiovictrix DSM 17093]
          Length = 360

 Score =  358 bits (919), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 179/312 (57%), Positives = 245/312 (78%), Gaps = 1/312 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + ++LE+ LSQI++ +GKGAIM+LG   S+ +   V+ +GS+ +D+ALG+GG P+GRI+E
Sbjct: 21  RRRSLESTLSQIEKQFGKGAIMRLGDDRSLLDQ-GVIPTGSMSVDLALGVGGVPRGRIIE 79

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPES GKTTL+LH IA++Q+ GG  AFVDAEHALD  YA+ LGVD   LL+SQPDTGE
Sbjct: 80  IYGPESGGKTTLSLHVIAEAQRLGGVAAFVDAEHALDPTYAKALGVDTDELLVSQPDTGE 139

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEIT++LVRSGAVD++V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKLT +++
Sbjct: 140 QALEITELLVRSGAVDVVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTGALA 199

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S+   +FINQ+R KIGVM+G+PETT GG ALKFY+SVRL++RR G +K      GNQ R
Sbjct: 200 KSRTTAIFINQIREKIGVMYGNPETTPGGRALKFYASVRLEVRRKGDVKSGADKVGNQVR 259

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV KNK+A PFK+ E +I++G+GI   G+LI +     ++ KSG+++ + G  +GQG+E
Sbjct: 260 VKVTKNKVAPPFKEAEVEILFGKGIDKLGDLITIATDLDLIQKSGSFYKYDGVTIGQGKE 319

Query: 312 NSKIFLRENIEI 323
            +  +L +N  +
Sbjct: 320 KAASYLLDNPHL 331


>gi|304564667|gb|ADM45197.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 253

 Score =  358 bits (918), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 167/242 (69%), Positives = 210/242 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE
Sbjct: 9   VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 68

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+ LG ++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+
Sbjct: 69  HALDPVYAKNLGANIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 128

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 129 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 188

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D
Sbjct: 189 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 248

Query: 285 LG 286
           +G
Sbjct: 249 IG 250


>gi|304373008|ref|YP_003856217.1| recombinase A [Mycoplasma hyorhinis HUB-1]
 gi|304309199|gb|ADM21679.1| recombinase A [Mycoplasma hyorhinis HUB-1]
          Length = 343

 Score =  358 bits (918), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 168/321 (52%), Positives = 235/321 (73%), Gaps = 2/321 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           +K L+ A  +I++ +GK AIM LG +       EV S+GSL +D ALGIGGFPKGRI+EI
Sbjct: 19  NKELKQAFLEIEKKFGKEAIMLLGEKPDT--DTEVFSTGSLAIDNALGIGGFPKGRIIEI 76

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           +GPESSGKTT+ LH IA+ QK GG  AF+DAEH++D  YAR LG+D+ NL++SQPD+GEQ
Sbjct: 77  FGPESSGKTTITLHAIAEVQKNGGVAAFIDAEHSIDPQYARNLGIDIDNLILSQPDSGEQ 136

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           AL+I D LV++GA+D+IV+DSVAAL P AE+ G+M + + G Q RLMS+ALRK+T S+++
Sbjct: 137 ALDIVDTLVKTGAIDLIVVDSVAALVPLAELNGEMKDQVVGAQPRLMSKALRKITGSLNK 196

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           +   ++FINQ+R K+GV+FG+PETT GG ALKFYSS+RLD+R+   I     I GN  ++
Sbjct: 197 NGTTIIFINQIREKVGVLFGNPETTPGGRALKFYSSIRLDVRKNQQISTGSDIIGNMVKI 256

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK+A PFK    +I++ +GIS F E+  L  +  IV K GAW+S+  Q + QG+ N
Sbjct: 257 KVVKNKLAIPFKTANVEIVFAQGISKFAEIAQLAEEYGIVSKKGAWYSYNDQNIAQGKTN 316

Query: 313 SKIFLRENIEIAENIESLLRQ 333
            ++ L  N  + E + +L+++
Sbjct: 317 FRLLLENNNSLYEELRALVKE 337


>gi|56808546|ref|ZP_00366280.1| COG0468: RecA/RadA recombinase [Streptococcus pyogenes M49 591]
          Length = 302

 Score =  358 bits (918), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 174/286 (60%), Positives = 226/286 (79%), Gaps = 6/286 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KDS  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGTTQIKGTGDQKDSSI 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           G +T++KVVKNK+A PFK  E +IMYGEGIS  GEL+ +     I+
Sbjct: 256 GKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDII 301


>gi|94986237|ref|YP_605601.1| recombinase A [Deinococcus geothermalis DSM 11300]
 gi|123079824|sp|Q1IWF2|RECA_DEIGD RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|94556518|gb|ABF46432.1| recA protein [Deinococcus geothermalis DSM 11300]
 gi|148829212|gb|ABR14040.1| RecA [Deinococcus geothermalis]
          Length = 358

 Score =  358 bits (918), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 184/327 (56%), Positives = 256/327 (78%), Gaps = 3/327 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           D+    +  ++ KA+E A++QI++ +GKG+IM+LG++  +   ++ VS+GSL LD+ALG+
Sbjct: 8   DFGTPSDSKERLKAIETAMTQIEKAFGKGSIMRLGAESKL--DVQAVSTGSLSLDLALGV 65

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GRI EIYGPES GKTTLAL  IAQ+Q+ GGTCAF+DAEHALD +YAR LGV+   
Sbjct: 66  GGIPRGRITEIYGPESGGKTTLALSVIAQAQRAGGTCAFIDAEHALDPVYARSLGVNTDE 125

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPD GEQALEI ++LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQ
Sbjct: 126 LLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQ 185

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIK 240
           ALRKLT+ +S++    +FINQ+R KIGVM+G+PETTTGG ALKFY+SVRLD+R++G  +K
Sbjct: 186 ALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIGQPVK 245

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             +   GN  +VK VKNK+A PFK+VE  ++YG+G     +L+ L     I+ K+G+++S
Sbjct: 246 LGNDAVGNTVKVKTVKNKVAPPFKEVELTLLYGKGFDQLSDLVTLAADMDIIKKAGSFYS 305

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENI 327
           +  +R+GQG+E +  ++ E  E+ + I
Sbjct: 306 YGEERIGQGKEKAIAYIAERPELEQEI 332


>gi|304564669|gb|ADM45198.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 255

 Score =  358 bits (918), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 167/242 (69%), Positives = 210/242 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE
Sbjct: 10  VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 69

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+ LG ++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+
Sbjct: 70  HALDPVYAKNLGANIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 129

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 130 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 189

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D
Sbjct: 190 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 249

Query: 285 LG 286
           +G
Sbjct: 250 IG 251


>gi|193216565|ref|YP_001999807.1| recombinase A [Mycoplasma arthritidis 158L3-1]
 gi|193001888|gb|ACF07103.1| recombination protein RecA [Mycoplasma arthritidis 158L3-1]
          Length = 334

 Score =  357 bits (917), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 165/322 (51%), Positives = 245/322 (76%), Gaps = 2/322 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           NI D+++ LEA L +I++ +GK +IM LG +  I    EV SSGS+ ++ ALGIGG+PKG
Sbjct: 4   NIKDENQLLEATLKEIEKKFGKESIMILGQKPEITP--EVFSSGSISINRALGIGGWPKG 61

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+E+YGPESSGKTT+ALH IA+ QK GG  AF+DAEH++D  YA+ +GVD+ NL++SQP
Sbjct: 62  RIIEVYGPESSGKTTIALHAIAEIQKLGGIAAFIDAEHSIDPNYAKNVGVDIDNLILSQP 121

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D+GEQALEI D L ++GA+D+IV+DSVAAL P  E++G+M + + G QARLMS+ALRK+T
Sbjct: 122 DSGEQALEIVDSLAKTGAIDLIVVDSVAALVPEVELQGEMRDQVVGAQARLMSKALRKIT 181

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            S++++K  ++FINQ+R KIGV+FG+PETT+GG ALKFYSS+RL++R+  ++     I G
Sbjct: 182 GSLAKNKTTIIFINQIREKIGVIFGNPETTSGGRALKFYSSIRLEVRKQQNLTSNGDILG 241

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           NQ + KVVKNK+A+P+K  + +I++ +GIS   E+I+   +  I+ K G+W+S++ + + 
Sbjct: 242 NQVKCKVVKNKLAAPYKNAQIEIIFSQGISLTSEIINFAEEFGILTKKGSWYSYENENIA 301

Query: 308 QGRENSKIFLRENIEIAENIES 329
           QG  N ++ L  N ++ + I++
Sbjct: 302 QGVANLQLLLETNHDLFKKIKT 323


>gi|23194267|gb|AAN15081.1| RecA protein [Vibrio cholerae]
          Length = 236

 Score =  357 bits (917), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 166/236 (70%), Positives = 203/236 (86%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           L LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA
Sbjct: 1   LSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           +KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  
Sbjct: 61  KKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHM 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD
Sbjct: 121 GLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 180

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           IRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK
Sbjct: 181 IRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVK 236


>gi|227513196|ref|ZP_03943245.1| recombination protein A [Lactobacillus buchneri ATCC 11577]
 gi|227083577|gb|EEI18889.1| recombination protein A [Lactobacillus buchneri ATCC 11577]
          Length = 360

 Score =  357 bits (917), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 178/341 (52%), Positives = 248/341 (72%), Gaps = 13/341 (3%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I + +GKGAIM++G + +    IE++S+G L +DIALG+GG P+GR+ EI+GPESSGKTT
Sbjct: 31  IDKEFGKGAIMRMGDKANT--NIEILSTGVLSVDIALGVGGLPRGRVTEIFGPESSGKTT 88

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LAL  +A++QK G T A++DAE+ALD  YA+ LGV+L  LLISQP  GE+ LEI + LV 
Sbjct: 89  LALQAVAEAQKNGFTAAYIDAENALDPSYAKNLGVNLDELLISQPGGGEEGLEIANKLVE 148

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVDI+VIDSVAAL P+AEIEG++G++  G+QARLMSQALRK+TS+I ++  +++FINQ
Sbjct: 149 SGAVDIVVIDSVAALVPKAEIEGEIGDNHVGLQARLMSQALRKMTSAIYQNHVVVIFINQ 208

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +R K+GVMFGSPETT GG ALKFY+SVRLDIRR  ++KD     GN  R+KVVKNK+ASP
Sbjct: 209 LREKVGVMFGSPETTPGGRALKFYASVRLDIRRTQAVKDGKEQIGNGVRIKVVKNKVASP 268

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKAS--IVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
           FK+VE  + YG GI    +++ + V A   ++ KSG+W+S+  +R+GQG  N+  +L  +
Sbjct: 269 FKKVETVMSYGYGIRKNDDMLAIAVDAPYEVIKKSGSWYSYADERIGQGANNAARYLDSH 328

Query: 321 IEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
             +A  IE  +R          +  P I + +D + ++ +N
Sbjct: 329 PTMANEIEQKIRD---------IAFPKIISAEDKENNEQNN 360


>gi|30142059|gb|AAP13812.1| recombinase A subunit [Brenneria quercina]
          Length = 240

 Score =  357 bits (917), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 169/240 (70%), Positives = 207/240 (86%), Gaps = 2/240 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   S+   +E++S+GSL LDIALG+GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRLGEDRSM--DVEIISTGSLSLDIALGVGGLPMGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQRKGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIG
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSSTLLIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR+G+IKD D + G++TRVKVVKNK+A+PFKQ EF
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRIGAIKDGDEVVGSETRVKVVKNKVAAPFKQAEF 238


>gi|304564741|gb|ADM45234.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 255

 Score =  357 bits (917), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 167/242 (69%), Positives = 210/242 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE
Sbjct: 10  VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 69

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+
Sbjct: 70  HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 129

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 130 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 189

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEG S  G ++D
Sbjct: 190 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGXSREGSILD 249

Query: 285 LG 286
           +G
Sbjct: 250 IG 251


>gi|229551416|ref|ZP_04440141.1| recombination protein A [Lactobacillus rhamnosus LMS2-1]
 gi|229315375|gb|EEN81348.1| recombination protein A [Lactobacillus rhamnosus LMS2-1]
          Length = 403

 Score =  357 bits (916), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 167/336 (49%), Positives = 251/336 (74%), Gaps = 6/336 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K+ +  D+   LE AL +I + +G+GA+M++G +  +   I+VVS+G L LD+ALG+GG 
Sbjct: 20  KKSDATDRETELEKALQKITKAFGEGAVMKMGDRPEL--KIDVVSTGILSLDLALGVGGL 77

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GRIVEIYGPESSGKTT+AL TIA+ QKTGG  A++DAE+A+D  YA +LGV++ +LL+
Sbjct: 78  PRGRIVEIYGPESSGKTTIALQTIAELQKTGGKAAYIDAENAMDPKYAAELGVNIDDLLL 137

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQP++GEQ LEI +ML+ S AVD++VIDSVAAL P+AEIEG +G+S  G+QARLMSQALR
Sbjct: 138 SQPNSGEQGLEIAEMLIESAAVDVVVIDSVAALVPKAEIEGAIGDSHVGLQARLMSQALR 197

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           K+  +I+ +  +++FINQ+R K+G++FG+PE T GG ALKFY+SVR+++R+   +KD  +
Sbjct: 198 KMAGTINNTNTLVIFINQLREKVGIVFGNPEVTPGGRALKFYASVRIEVRKGQQVKDGKN 257

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA----SIVDKSGAWFS 300
           + G  +++KV KNK+A PFK VE  + +G GI    ++I+L         ++ KSG+W++
Sbjct: 258 VVGFASKLKVTKNKVAPPFKTVETTMSFGHGIEHNTDMINLATDKDNDLDVITKSGSWYN 317

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAG 336
           +  +RLGQG  N+  +L E+ E+++ IE+ +R+ + 
Sbjct: 318 YGKERLGQGLVNASHYLDEHPEVSKEIEAKIREQSA 353


>gi|324985138|gb|ADY69167.1| recombinase A repair protein [Vibrio neptunius]
          Length = 235

 Score =  357 bits (916), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 163/231 (70%), Positives = 200/231 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 4   VETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGVD+  LL+SQPDTGEQALEI + L RSGA+D++V+DSVAALTP+AEIE
Sbjct: 64  HALDPVYAKKLGVDIDALLVSQPDTGEQALEICNALARSGAIDVMVVDSVAALTPKAEIE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 124 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 183

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275
           FY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E  IMYG G
Sbjct: 184 FYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQIMYGAG 234


>gi|122912899|gb|ABM68013.1| RecA [Epulopiscium sp. 'N.t. morphotype B']
          Length = 267

 Score =  357 bits (916), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 167/267 (62%), Positives = 215/267 (80%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99
           SI   I+  S+G++ LDIALG GG P GRIVE++GPESSGKTTL LH IA+ QK+GG  A
Sbjct: 1   SINTKIKTFSTGAISLDIALGAGGIPIGRIVEVFGPESSGKTTLTLHMIAEVQKSGGIAA 60

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F+DAEHALD  YA++LGV++ +L +SQPD GEQALEI + +V S A++++VIDSVAAL P
Sbjct: 61  FIDAEHALDPEYAQRLGVNISDLYVSQPDNGEQALEIAETMVHSQAINLVVIDSVAALVP 120

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           RAEI+G+MG+S  G+QARLMSQALRKLT  +++S C ++FINQ+R K+GV+FG+PETT G
Sbjct: 121 RAEIDGNMGDSHVGLQARLMSQALRKLTGLVNKSNCTVIFINQLREKVGVIFGNPETTPG 180

Query: 220 GNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFF 279
           G ALKFYSSVRLDIR+  +IK+   I G++TRVKVVKNK+A PFKQ EFDI+YGEGIS  
Sbjct: 181 GRALKFYSSVRLDIRKAETIKNATEIIGSKTRVKVVKNKIAPPFKQAEFDIIYGEGISSI 240

Query: 280 GELIDLGVKASIVDKSGAWFSFKGQRL 306
           G+++D  V   IV K GAW+S+ G ++
Sbjct: 241 GDILDTAVNIDIVAKGGAWYSYNGTKI 267


>gi|223470148|gb|ACM90401.1| recombinase A [Streptococcus salivarius]
          Length = 280

 Score =  357 bits (916), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 171/279 (61%), Positives = 221/279 (79%), Gaps = 6/279 (2%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKGA+M LG +    + ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH
Sbjct: 3   FGKGAVMXLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALH 60

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAV
Sbjct: 61  AVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAV 120

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K
Sbjct: 121 DLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREK 180

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASP 262
           +G+MFG+PETT GG ALKFY+SVRLD+R    IK     KD   G +T++KVVKNK+A P
Sbjct: 181 VGIMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDKKDQNVGKETKIKVVKNKVAPP 240

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
           FK+   +IMYGEGIS  GEL+ +     I+ K+GAWFS+
Sbjct: 241 FKEAFVEIMYGEGISQTGELVKIASDLGIIQKAGAWFSY 279


>gi|52630807|gb|AAU84871.1| RecA [Burkholderia terricola]
          Length = 222

 Score =  357 bits (916), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 167/222 (75%), Positives = 198/222 (89%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHA
Sbjct: 1   VVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKIGGTAAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+
Sbjct: 61  LDIQYAGKLGVNVNDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY
Sbjct: 121 MGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFY 180

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           +SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A PF++  F
Sbjct: 181 ASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPPFREAIF 222


>gi|219111175|ref|XP_002177339.1| chloroplast-targeted nuclear-encoded recombinase [Phaeodactylum
           tricornutum CCAP 1055/1]
 gi|217411874|gb|EEC51802.1| chloroplast-targeted nuclear-encoded recombinase [Phaeodactylum
           tricornutum CCAP 1055/1]
          Length = 431

 Score =  357 bits (916), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 180/321 (56%), Positives = 248/321 (77%), Gaps = 6/321 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K  AL+  L+QI+R YG+G+I++LG   ++   ++ + SGSL LD ALG GGFPKGR+VE
Sbjct: 79  KRAALDGVLNQIERNYGRGSIVKLGDADNM--KVDTIGSGSLTLDAALG-GGFPKGRVVE 135

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH IA+SQK GGT AFVDAEHALD  YA KLGVD+ NLL+SQPD+GE
Sbjct: 136 IYGPESSGKTTLALHAIAESQKVGGTAAFVDAEHALDPAYAAKLGVDIDNLLVSQPDSGE 195

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
            AL++ D LVRS AVD+IV+DSVAAL PRAE+EGDM ++  G+QARLMS+A+RK+T S++
Sbjct: 196 MALDVVDQLVRSAAVDVIVVDSVAALVPRAELEGDMSDAQIGLQARLMSKAMRKITGSLA 255

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
            S+C ++F+NQ+R K+GV++GSPE T+GGNALKFY+SVRLD RR   + +    +G + +
Sbjct: 256 LSQCTVIFLNQLRSKVGVIYGSPEVTSGGNALKFYASVRLDTRRKEILPEN---SGIRVK 312

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A+PFK V  D+++G GI   G ++D  +  +I+++ G+WFS+KGQ + QGR 
Sbjct: 313 VKVVKNKVAAPFKIVNLDLLFGSGIDQIGCMLDAAMDLNIIERRGSWFSYKGQNMAQGRI 372

Query: 312 NSKIFLRENIEIAENIESLLR 332
           N    ++ + ++   +E+ +R
Sbjct: 373 NVVEMIKSDTKLMAQLETEVR 393


>gi|295848055|gb|ADG44939.1| recombinase A [Vibrio cholerae]
          Length = 238

 Score =  357 bits (916), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 162/238 (68%), Positives = 204/238 (85%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KL V++  LL
Sbjct: 1   LPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLDVNIDELL 60

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+
Sbjct: 61  VSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAM 120

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ +
Sbjct: 121 RKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGE 180

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+++
Sbjct: 181 EVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYTY 238


>gi|30691943|gb|AAP33468.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum]
          Length = 244

 Score =  357 bits (916), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 170/245 (69%), Positives = 207/245 (84%), Gaps = 2/245 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 2   KGFIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 60  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 120 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IKD + + G++TRVKVVKNK+A+PFKQ EF
Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVGSETRVKVVKNKVAAPFKQAEF 239

Query: 269 DIMYG 273
            IM+G
Sbjct: 240 QIMFG 244


>gi|157493221|gb|ABV57976.1| RecA [Vibrio cholerae]
          Length = 243

 Score =  357 bits (916), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 164/238 (68%), Positives = 204/238 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 6   VETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAE 65

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE
Sbjct: 66  HALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 125

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 126 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 185

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           FY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GEL
Sbjct: 186 FYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGEL 243


>gi|6694803|gb|AAF25388.1|AF214741_1 RecA protein [Arthrobacter sp. 'SMCC G984']
          Length = 255

 Score =  357 bits (915), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 169/253 (66%), Positives = 210/253 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAE
Sbjct: 3   IEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA KLGVD   LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIE
Sbjct: 63  HALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG+S  G+QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALK
Sbjct: 123 GDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALK 182

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+S+R+D+RR+ ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS  G +ID
Sbjct: 183 FYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQGISREGGIID 242

Query: 285 LGVKASIVDKSGA 297
           +GV+  I+ KSG+
Sbjct: 243 MGVEHGIIKKSGS 255


>gi|30691919|gb|AAP33457.1| recombinase A [Pectobacterium atrosepticum]
          Length = 244

 Score =  357 bits (915), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 170/245 (69%), Positives = 207/245 (84%), Gaps = 2/245 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 2   KGFIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 60  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 120 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF
Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEF 239

Query: 269 DIMYG 273
            IMYG
Sbjct: 240 QIMYG 244


>gi|30691939|gb|AAP33466.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum]
          Length = 244

 Score =  357 bits (915), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 169/245 (68%), Positives = 208/245 (84%), Gaps = 2/245 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 2   KGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 60  ASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 120 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF
Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEF 239

Query: 269 DIMYG 273
            IM+G
Sbjct: 240 QIMFG 244


>gi|157493217|gb|ABV57974.1| RecA [Vibrio cholerae]
          Length = 238

 Score =  357 bits (915), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 164/238 (68%), Positives = 204/238 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 1   VETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE
Sbjct: 61  HALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 121 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 180

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           FY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GEL
Sbjct: 181 FYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGEL 238


>gi|199599599|ref|ZP_03212982.1| RecA/RadA recombinase [Lactobacillus rhamnosus HN001]
 gi|258509638|ref|YP_003172389.1| RecA recombinase [Lactobacillus rhamnosus GG]
 gi|258540839|ref|YP_003175338.1| RecA recombinase [Lactobacillus rhamnosus Lc 705]
 gi|199589514|gb|EDY97637.1| RecA/RadA recombinase [Lactobacillus rhamnosus HN001]
 gi|257149565|emb|CAR88538.1| RecA recombinase [Lactobacillus rhamnosus GG]
 gi|257152515|emb|CAR91487.1| RecA recombinase [Lactobacillus rhamnosus Lc 705]
 gi|259650903|dbj|BAI43065.1| recombinase RecA [Lactobacillus rhamnosus GG]
          Length = 395

 Score =  357 bits (915), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 167/335 (49%), Positives = 251/335 (74%), Gaps = 6/335 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K+ +  D+   LE AL +I + +G+GA+M++G +  +   I+VVS+G L LD+ALG+GG 
Sbjct: 12  KKSDATDRETELEKALQKITKAFGEGAVMKMGDRPEL--KIDVVSTGILSLDLALGVGGL 69

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GRIVEIYGPESSGKTT+AL TIA+ QKTGG  A++DAE+A+D  YA +LGV++ +LL+
Sbjct: 70  PRGRIVEIYGPESSGKTTIALQTIAELQKTGGKAAYIDAENAMDPKYAAELGVNIDDLLL 129

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQP++GEQ LEI +ML+ S AVD++VIDSVAAL P+AEIEG +G+S  G+QARLMSQALR
Sbjct: 130 SQPNSGEQGLEIAEMLIESAAVDVVVIDSVAALVPKAEIEGAIGDSHVGLQARLMSQALR 189

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           K+  +I+ +  +++FINQ+R K+G++FG+PE T GG ALKFY+SVR+++R+   +KD  +
Sbjct: 190 KMAGTINNTNTLVIFINQLREKVGIVFGNPEVTPGGRALKFYASVRIEVRKGQQVKDGKN 249

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA----SIVDKSGAWFS 300
           + G  +++KV KNK+A PFK VE  + +G GI    ++I+L         ++ KSG+W++
Sbjct: 250 VVGFASKLKVTKNKVAPPFKTVETTMSFGHGIEHNTDMINLATDKDNDLDVITKSGSWYN 309

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
           +  +RLGQG  N+  +L E+ E+++ IE+ +R+ +
Sbjct: 310 YGKERLGQGLVNASHYLDEHPEVSKEIEAKIREQS 344


>gi|30266977|gb|AAP21597.1| recombinase A [Pectobacterium atrosepticum]
          Length = 245

 Score =  357 bits (915), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 171/246 (69%), Positives = 206/246 (83%), Gaps = 2/246 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 2   KGFIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 60  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 120 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDI R G IK+ + I G++TRVKVVKNK+A+PFKQ EF
Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIHRTGPIKEGEEIVGSETRVKVVKNKVAAPFKQAEF 239

Query: 269 DIMYGE 274
            IMYGE
Sbjct: 240 QIMYGE 245


>gi|330723382|gb|AEC45752.1| recombinase A [Mycoplasma hyorhinis MCLD]
          Length = 328

 Score =  357 bits (915), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 167/321 (52%), Positives = 234/321 (72%), Gaps = 2/321 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           +K L+ A  +I++ +GK AIM LG +       EV S+GS  +D ALGIGGFPKGRI+EI
Sbjct: 4   NKELKQAFLEIEKKFGKEAIMLLGEKPDT--DTEVFSTGSFAIDNALGIGGFPKGRIIEI 61

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           +GPESSGKTT+ LH IA+ QK GG  AF+DAEH++D  YAR LG+D+ NL++SQPD+GEQ
Sbjct: 62  FGPESSGKTTITLHAIAEVQKNGGVAAFIDAEHSIDPQYARNLGIDIDNLILSQPDSGEQ 121

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           AL+I D LV++GA+D+IV+DSVAAL P AE+ G+M + + G Q RLMS+ALRK+T S+++
Sbjct: 122 ALDIVDTLVKTGAIDLIVVDSVAALVPLAELNGEMKDQVVGAQPRLMSKALRKITGSLNK 181

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           +   ++FINQ+R K+GV+FG+PETT GG ALKFYSS+RLD+R+   I     I GN  ++
Sbjct: 182 NGTTIIFINQIREKVGVLFGNPETTPGGRALKFYSSIRLDVRKNQQISTGSDIIGNMVKI 241

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK+A PFK    +I++ +GIS F E+  L  +  IV K GAW+S+  Q + QG+ N
Sbjct: 242 KVVKNKLAIPFKTANVEIVFAQGISKFAEIAQLAEEYGIVSKKGAWYSYNDQNIAQGKTN 301

Query: 313 SKIFLRENIEIAENIESLLRQ 333
            ++ L  N  + E + +L+++
Sbjct: 302 FRLLLENNNSLYEELRALVKE 322


>gi|191639560|ref|YP_001988726.1| Protein recA [Lactobacillus casei BL23]
 gi|190713862|emb|CAQ67868.1| Protein recA [Lactobacillus casei BL23]
 gi|327383665|gb|AEA55141.1| RecA protein [Lactobacillus casei LC2W]
 gi|327386858|gb|AEA58332.1| RecA protein [Lactobacillus casei BD-II]
          Length = 397

 Score =  356 bits (914), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 167/328 (50%), Positives = 246/328 (75%), Gaps = 6/328 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+   LE AL +I++ +G+GA+M++G +  +   ++VVS+G L LD+ALG+GG P+GRI
Sbjct: 17  TDRDTELEKALQKIKKAFGEGAVMKMGDRPEL--KVDVVSTGILSLDLALGVGGLPRGRI 74

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VE+YGPES+GKTT+AL TIA+ QK+GG  A++DAE+A+D  YA +LGV++ +LL+SQP++
Sbjct: 75  VEVYGPESTGKTTIALQTIAELQKSGGKAAYIDAENAMDPKYAAELGVNIDDLLLSQPNS 134

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQ LEI +ML+ S AVDI+VIDSVAAL P+AEIEG +G+S  G+QARLMSQALRK+  S
Sbjct: 135 GEQGLEIAEMLIESAAVDIVVIDSVAALVPKAEIEGAIGDSHVGLQARLMSQALRKMAGS 194

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I+ +  +++FINQ+R K+GVMFG+PE T GG ALKFY+SVR++++R   +KD   + G  
Sbjct: 195 INNTNTLVIFINQLREKVGVMFGNPEVTPGGRALKFYASVRIEVKRGQQVKDGKDVVGFA 254

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA----SIVDKSGAWFSFKGQR 305
           +++KV KNK+A PFK VE  + +G GI    ++I+L         ++ KSG+W+++  +R
Sbjct: 255 SKLKVTKNKVAPPFKSVETTMSFGHGIEHNTDMINLATDKDNDIDVITKSGSWYNYGKER 314

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQ 333
           LGQG  N+  +L E+ EI++ IE  +R+
Sbjct: 315 LGQGLVNASHYLDEHPEISKEIEEKIRE 342


>gi|295848049|gb|ADG44936.1| recombinase A [Vibrio cholerae]
 gi|295848053|gb|ADG44938.1| recombinase A [Vibrio cholerae]
 gi|295848057|gb|ADG44940.1| recombinase A [Vibrio cholerae]
          Length = 235

 Score =  356 bits (914), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 163/235 (69%), Positives = 202/235 (85%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL
Sbjct: 1   LPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELL 60

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+
Sbjct: 61  VSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAM 120

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ +
Sbjct: 121 RKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGE 180

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
            + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW
Sbjct: 181 EVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAW 235


>gi|323710232|gb|ADY03050.1| RecA [Escherichia coli]
          Length = 228

 Score =  356 bits (914), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 160/228 (70%), Positives = 202/228 (88%)

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTGEQA
Sbjct: 1   GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQA 60

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S
Sbjct: 61  LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS 120

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
             +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++TRVK
Sbjct: 121 NTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVK 180

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
           VVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+
Sbjct: 181 VVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSY 228


>gi|29421220|gb|AAO62569.1| recombinase A [Pantoea stewartii]
          Length = 243

 Score =  356 bits (914), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 168/244 (68%), Positives = 206/244 (84%), Gaps = 2/244 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPE+SGKTTL L  IA
Sbjct: 1   GSIMRLGEARSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I
Sbjct: 59  AAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVI 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           ++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGV
Sbjct: 119 IVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFY+SVRLDIRR+G+IK  D++ G++TRVKVVKNKMA+PFKQ EF 
Sbjct: 179 MFGNPETTTGGNALKFYASVRLDIRRIGAIKKGDNVVGSETRVKVVKNKMAAPFKQAEFQ 238

Query: 270 IMYG 273
             YG
Sbjct: 239 FXYG 242


>gi|6694848|gb|AAF25433.1|AF214786_1 RecA protein [Arthrobacter pascens]
          Length = 253

 Score =  356 bits (914), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 168/253 (66%), Positives = 210/253 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAE
Sbjct: 1   IEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA KLGVD   LL+SQPDTGEQALEI DML+ SG++D+IVIDSVAAL PRAEIE
Sbjct: 61  HALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLIGSGSLDVIVIDSVAALVPRAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG+S  G+QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALK
Sbjct: 121 GDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALK 180

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+S+R+D+RR+ ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS  G +ID
Sbjct: 181 FYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQGISREGGIID 240

Query: 285 LGVKASIVDKSGA 297
           +GV+  I+ KSG+
Sbjct: 241 MGVEHGIIKKSGS 253


>gi|290795139|gb|ADD64584.1| RecA recombinase [Vibrio sp. FALF273]
          Length = 236

 Score =  356 bits (914), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 162/236 (68%), Positives = 203/236 (86%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  
Sbjct: 1   GGLPMGRIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDA 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 61  LLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 121 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 180

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
            D + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GEL+DLGVK  +V+K+GA
Sbjct: 181 GDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKAGA 236


>gi|239630482|ref|ZP_04673513.1| RecA/RadA recombinase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301067634|ref|YP_003789657.1| recA/RadA recombinase [Lactobacillus casei str. Zhang]
 gi|239526765|gb|EEQ65766.1| RecA/RadA recombinase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300440041|gb|ADK19807.1| RecA/RadA recombinase [Lactobacillus casei str. Zhang]
          Length = 397

 Score =  356 bits (913), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 167/327 (51%), Positives = 246/327 (75%), Gaps = 6/327 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+   LE AL +I++ +G+GA+M++G +  +   ++VVS+G L LD+ALG+GG P+GRIV
Sbjct: 18  DRDTELEKALQKIKKAFGEGAVMKMGDRPEL--KVDVVSTGILSLDLALGVGGLPRGRIV 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPES+GKTT+AL TIA+ QK+GG  A++DAE+A+D  YA +LGV++ +LL+SQP++G
Sbjct: 76  EVYGPESTGKTTIALQTIAELQKSGGKAAYIDAENAMDPKYAAELGVNIDDLLLSQPNSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI +ML+ S AVDI+VIDSVAAL P+AEIEG +G+S  G+QARLMSQALRK+  SI
Sbjct: 136 EQGLEIAEMLIESAAVDIVVIDSVAALVPKAEIEGAIGDSHVGLQARLMSQALRKMAGSI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + +  +++FINQ+R K+GVMFG+PE T GG ALKFY+SVR++++R   +KD   + G  +
Sbjct: 196 NNTNTLVIFINQLREKVGVMFGNPEVTPGGRALKFYASVRIEVKRGQQVKDGKDVVGFAS 255

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA----SIVDKSGAWFSFKGQRL 306
           ++KV KNK+A PFK VE  + +G GI    ++I+L         ++ KSG+W+++  +RL
Sbjct: 256 KLKVTKNKVAPPFKSVETTMSFGHGIEHNTDMINLATDKDNDIDVITKSGSWYNYGKERL 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333
           GQG  N+  +L E+ EI++ IE  +R+
Sbjct: 316 GQGLVNASHYLDEHPEISKEIEEKIRE 342


>gi|6694836|gb|AAF25421.1|AF214774_1 RecA protein [Arthrobacter sp. 'SMCC ZAT056']
          Length = 255

 Score =  356 bits (913), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 168/253 (66%), Positives = 210/253 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAE
Sbjct: 3   IEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA KLGVD   LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEIE
Sbjct: 63  HALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG+S  G+QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALK
Sbjct: 123 GDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALK 182

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+S+R+D+RR+ ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS  G +ID
Sbjct: 183 FYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQGISREGGIID 242

Query: 285 LGVKASIVDKSGA 297
           +GV+  ++ KSG+
Sbjct: 243 MGVEHGLIKKSGS 255


>gi|190411101|gb|ACE78305.1| RecA [Vibrio parahaemolyticus]
 gi|190411103|gb|ACE78306.1| RecA [Vibrio parahaemolyticus]
 gi|190411105|gb|ACE78307.1| RecA [Vibrio parahaemolyticus]
 gi|190411107|gb|ACE78308.1| RecA [Vibrio parahaemolyticus]
 gi|190411109|gb|ACE78309.1| RecA [Vibrio parahaemolyticus]
 gi|190411111|gb|ACE78310.1| RecA [Vibrio parahaemolyticus]
          Length = 242

 Score =  356 bits (913), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 162/233 (69%), Positives = 201/233 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 7   VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAE 66

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE
Sbjct: 67  HALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIE 126

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 127 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 186

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277
           FY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IMYG+G +
Sbjct: 187 FYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFN 239


>gi|30691955|gb|AAP33472.1| recombinase A [Pectobacterium cacticida]
          Length = 243

 Score =  356 bits (913), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 168/245 (68%), Positives = 208/245 (84%), Gaps = 2/245 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG + S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRLGEERSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNKMA+PFKQ EF
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVIGSETRVKVVKNKMAAPFKQAEF 238

Query: 269 DIMYG 273
             ++G
Sbjct: 239 QSLFG 243


>gi|206596730|emb|CAQ68395.1| recombinase protein A [Brucella sp. BO1]
          Length = 210

 Score =  356 bits (913), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 165/210 (78%), Positives = 193/210 (91%)

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT
Sbjct: 1   DTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLT 60

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + G
Sbjct: 61  GSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVG 120

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           NQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QRLG
Sbjct: 121 NQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQRLG 180

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGL 337
           QGREN+K +L++N E+A  IE+ LRQNAGL
Sbjct: 181 QGRENAKQYLKDNPEVAREIETTLRQNAGL 210


>gi|116496076|ref|YP_807810.1| RecA/RadA recombinase [Lactobacillus casei ATCC 334]
 gi|116106226|gb|ABJ71368.1| RecA/RadA recombinase [Lactobacillus casei ATCC 334]
          Length = 397

 Score =  356 bits (913), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 167/327 (51%), Positives = 246/327 (75%), Gaps = 6/327 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+   LE AL +I++ +G+GA+M++G +  +   ++VVS+G L LD+ALG+GG P+GRIV
Sbjct: 18  DRDTQLEKALQKIKKAFGEGAVMKMGDRPEL--KVDVVSTGILSLDLALGVGGLPRGRIV 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPES+GKTT+AL TIA+ QK+GG  A++DAE+A+D  YA +LGV++ +LL+SQP++G
Sbjct: 76  EVYGPESTGKTTIALQTIAELQKSGGKAAYIDAENAMDPKYAAELGVNIDDLLLSQPNSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI +ML+ S AVDI+VIDSVAAL P+AEIEG +G+S  G+QARLMSQALRK+  SI
Sbjct: 136 EQGLEIAEMLIESAAVDIVVIDSVAALVPKAEIEGAIGDSHVGLQARLMSQALRKMAGSI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + +  +++FINQ+R K+GVMFG+PE T GG ALKFY+SVR++++R   +KD   + G  +
Sbjct: 196 NNTNTLVIFINQLREKVGVMFGNPEVTPGGRALKFYASVRIEVKRGQQVKDGKDVVGFAS 255

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA----SIVDKSGAWFSFKGQRL 306
           ++KV KNK+A PFK VE  + +G GI    ++I+L         ++ KSG+W+++  +RL
Sbjct: 256 KLKVTKNKVAPPFKSVETTMSFGHGIEHNTDMINLATDKDNDIDVITKSGSWYNYGKERL 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333
           GQG  N+  +L E+ EI++ IE  +R+
Sbjct: 316 GQGLVNASHYLDEHPEISKEIEEKIRE 342


>gi|30691947|gb|AAP33470.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum]
          Length = 243

 Score =  356 bits (913), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 169/245 (68%), Positives = 207/245 (84%), Gaps = 2/245 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGYIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEF 238

Query: 269 DIMYG 273
            IM+G
Sbjct: 239 QIMFG 243


>gi|6694807|gb|AAF25392.1|AF214745_1 RecA protein [Arthrobacter sp. 'SMCC ZAT001']
          Length = 254

 Score =  356 bits (913), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 168/253 (66%), Positives = 210/253 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAE
Sbjct: 2   IEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA KLGVD   LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEIE
Sbjct: 62  HALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG+S  G+QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALK
Sbjct: 122 GDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALK 181

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+S+R+D+RR+ ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS  G +ID
Sbjct: 182 FYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQGISREGGIID 241

Query: 285 LGVKASIVDKSGA 297
           +GV+  ++ KSG+
Sbjct: 242 MGVEHGLIKKSGS 254


>gi|313585622|gb|ADR70953.1| recombinase A [Deinococcus murrayi]
          Length = 359

 Score =  355 bits (912), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 186/327 (56%), Positives = 253/327 (77%), Gaps = 3/327 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           D+    +  ++ KA+E A++QI++ +GKG+IM+LG++  +   ++ VS+GSL LD+ALG+
Sbjct: 8   DFGTPSDSKERLKAIETAMTQIEKAFGKGSIMRLGAESKL--DVQAVSTGSLSLDLALGV 65

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GRI EIYGPES GKTTLAL  IAQ+QK GGTCAF+DAEHALD +YAR LGV+   
Sbjct: 66  GGIPRGRITEIYGPESGGKTTLALSVIAQAQKAGGTCAFIDAEHALDPVYARSLGVNTDE 125

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPD GEQ LEI ++LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQ
Sbjct: 126 LLVSQPDNGEQRLEIMELLVRSGAIDVVVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQ 185

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIK 240
           ALRKLT+ +S++    +FINQ+R KIGVM+G+PETTTGG ALKFY+SVRLD+R++G  +K
Sbjct: 186 ALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIGQPVK 245

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             +   GN  +VK VKNK+A PFK+VE  +MYG+G     +L+ L     I+ K+G+++S
Sbjct: 246 MGNDAVGNTVKVKTVKNKVAPPFKEVELTLMYGKGFDQLSDLVTLASDMDIIKKAGSFYS 305

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENI 327
           +   RLGQG+E +  ++ E  E+   I
Sbjct: 306 YGEDRLGQGKEKAIAYIAERPELEAEI 332


>gi|324985142|gb|ADY69169.1| recombinase A repair protein [Vibrio coralliilyticus]
          Length = 231

 Score =  355 bits (912), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 163/230 (70%), Positives = 199/230 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+M
Sbjct: 61  DPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277
           SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E  IMYG G +
Sbjct: 181 SVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQIMYGAGFN 230


>gi|30691923|gb|AAP33458.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum]
 gi|30691925|gb|AAP33459.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum]
 gi|30691931|gb|AAP33462.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum]
 gi|30691933|gb|AAP33463.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum]
          Length = 243

 Score =  355 bits (912), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 169/245 (68%), Positives = 207/245 (84%), Gaps = 2/245 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGFIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEF 238

Query: 269 DIMYG 273
            IM+G
Sbjct: 239 QIMFG 243


>gi|227532940|ref|ZP_03962989.1| recombination protein A [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227189341|gb|EEI69408.1| recombination protein A [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 423

 Score =  355 bits (912), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 167/330 (50%), Positives = 247/330 (74%), Gaps = 6/330 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +  D+   LE AL +I++ +G+GA+M++G +  +   ++VVS+G L LD+ALG+GG P+G
Sbjct: 41  DATDRDTELEKALQKIKKAFGEGAVMKMGDRPEL--KVDVVSTGILSLDLALGVGGLPRG 98

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVE+YGPES+GKTT+AL TIA+ QK+GG  A++DAE+A+D  YA +LGV++ +LL+SQP
Sbjct: 99  RIVEVYGPESTGKTTIALQTIAELQKSGGKAAYIDAENAMDPKYAAELGVNIDDLLLSQP 158

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           ++GEQ LEI +ML+ S AVDI+VIDSVAAL P+AEIEG +G+S  G+QARLMSQALRK+ 
Sbjct: 159 NSGEQGLEIAEMLIESAAVDIVVIDSVAALVPKAEIEGAIGDSHVGLQARLMSQALRKMA 218

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            SI+ +  +++FINQ+R K+GVMFG+PE T GG ALKFY+SVR++++R   +KD   + G
Sbjct: 219 GSINNTNTLVIFINQLREKVGVMFGNPEVTPGGRALKFYASVRIEVKRGQQVKDGKDVVG 278

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA----SIVDKSGAWFSFKG 303
             +++KV KNK+A PFK VE  + +G GI    ++I+L         ++ KSG+W+++  
Sbjct: 279 FASKLKVTKNKVAPPFKSVETTMSFGHGIEHNTDMINLATDKDNDIDVITKSGSWYNYGK 338

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           +RLGQG  N+  +L E+ EI++ IE  +R+
Sbjct: 339 ERLGQGLVNASHYLDEHPEISKEIEEKIRE 368


>gi|308171324|gb|ADO15981.1| RecA [Vibrio scophthalmi LMG 19158]
          Length = 234

 Score =  355 bits (912), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 161/233 (69%), Positives = 201/233 (86%)

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQ
Sbjct: 2   GRIVEVYGPESSGKTTLTLELIAAAQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQ 61

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKL
Sbjct: 62  PDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKL 121

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIKD D + 
Sbjct: 122 TGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEVV 181

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GEL+DLGVK  +++K+  W+
Sbjct: 182 GNETRIKVVKNKIAAPFKQAETQILYGQGFNREGELVDLGVKHKLIEKAVPWY 234


>gi|156788958|gb|ABU96050.1| DNA recombinase [Vibrio parahaemolyticus]
          Length = 245

 Score =  355 bits (912), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 162/233 (69%), Positives = 201/233 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 10  VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAE 69

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE
Sbjct: 70  HALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIE 129

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 130 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 189

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277
           FY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IMYG+G +
Sbjct: 190 FYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFN 242


>gi|30691937|gb|AAP33465.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum]
          Length = 244

 Score =  355 bits (911), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 169/245 (68%), Positives = 207/245 (84%), Gaps = 2/245 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 2   KGFIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 60  ASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 120 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF
Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEF 239

Query: 269 DIMYG 273
            IM+G
Sbjct: 240 QIMFG 244


>gi|223635955|emb|CAQ03779.1| recombination-repair protein [Vibrio cholerae]
          Length = 248

 Score =  355 bits (911), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 166/249 (66%), Positives = 210/249 (84%), Gaps = 2/249 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAV
Sbjct: 59  LIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAV 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEA 238

Query: 267 EFDIMYGEG 275
              I  G+G
Sbjct: 239 NTQIRNGQG 247


>gi|157493223|gb|ABV57977.1| RecA [Vibrio cholerae]
          Length = 237

 Score =  355 bits (911), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 163/237 (68%), Positives = 203/237 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 1   VETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE
Sbjct: 61  HALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 121 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 180

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE 281
           FY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GE
Sbjct: 181 FYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGE 237


>gi|159485886|ref|XP_001700975.1| chloroplast RecA recombination protein [Chlamydomonas reinhardtii]
 gi|158281474|gb|EDP07229.1| chloroplast RecA recombination protein [Chlamydomonas reinhardtii]
          Length = 415

 Score =  355 bits (910), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 174/321 (54%), Positives = 228/321 (71%), Gaps = 3/321 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K+K     + +I R +G G+IM+L    S+   IE   SGSL LD ALG GG+P+GRI+E
Sbjct: 62  KAKLFNETVDRITRRFGDGSIMRLSD--SVTANIETFPSGSLTLDAALG-GGYPRGRIIE 118

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPE+SGKTTLA+H  A+ Q+ GGT A++D EHA D  YA +LG++L N   +QP TGE
Sbjct: 119 VYGPEASGKTTLAMHACAEIQRLGGTVAYIDVEHAFDRTYAERLGINLNNFWYAQPMTGE 178

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           +ALE+ D L RS   D++VIDSVAAL PRAE+EGD+G    G QARL+SQALRKL++S S
Sbjct: 179 EALEVMDELCRSNVCDLVVIDSVAALVPRAELEGDIGSVQIGSQARLLSQALRKLSASAS 238

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +SK  L FINQ+R KIGVMFG+PETT+GGNALK+YSSVR+DIR+  ++ + D    N+ R
Sbjct: 239 KSKTTLFFINQLRNKIGVMFGNPETTSGGNALKYYSSVRIDIRKKETLSESDQAYANRVR 298

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
            KVVKNK+ASP K+  F+I YG GI F G LID   +  ++ + GA++ +  QRLGQGRE
Sbjct: 299 AKVVKNKVASPHKEALFEIYYGRGIDFLGGLIDTAERLKVLTRRGAFYYYGDQRLGQGRE 358

Query: 312 NSKIFLRENIEIAENIESLLR 332
                LRE+ E    IE+ +R
Sbjct: 359 KVLAALREDAERTAAIEAAVR 379


>gi|83589164|ref|YP_429173.1| recA protein [Moorella thermoacetica ATCC 39073]
 gi|83572078|gb|ABC18630.1| recA protein [Moorella thermoacetica ATCC 39073]
          Length = 339

 Score =  355 bits (910), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 171/326 (52%), Positives = 245/326 (75%), Gaps = 5/326 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + +AL  AL++I++ +GKGAIM+LG Q  +   +E + +G L LD+ALG+GG P+GRI+E
Sbjct: 5   REQALSKALAEIEKKHGKGAIMRLGQQERL--NVEALPTGILPLDLALGVGGLPRGRIIE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+G E SGKTT+ALH + + QK GG    +DAEHA D  YA+ +GVD++NLL+SQP+ GE
Sbjct: 63  IFGEEGSGKTTIALHAVTEIQKGGGNAVLIDAEHAFDPNYAKTIGVDIENLLVSQPEYGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI   L++S AVDIIVIDSVAAL P+ E+EG+ G+++ G+QARLMSQA+RKL+  +S
Sbjct: 123 QALEIASALIQSSAVDIIVIDSVAALVPKKELEGEFGDAIVGLQARLMSQAMRKLSGIVS 182

Query: 192 RSKCILVFINQMRMKI--GVMFGSPE-TTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +SK I++FINQ+R KI  G  FG P+  TTGG ALKFYSSVR++++R   IK    + G+
Sbjct: 183 KSKTIVIFINQLREKINTGGSFGKPDFVTTGGRALKFYSSVRIEVQRGDQIKKGTEVVGH 242

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + + +VVKNK+A PF+  E D++YG G+S  G L+++ V+  IV KSGAW+ ++G  LGQ
Sbjct: 243 KMKTRVVKNKVAPPFRGCELDLIYGRGMSKEGALLEMAVEKGIVTKSGAWYCWQGDHLGQ 302

Query: 309 GRENSKIFLRENIEIAENIESLLRQN 334
           G EN+  FLR++ ++A  IES+L+++
Sbjct: 303 GHENACEFLRQHPDVAREIESVLKES 328


>gi|224531512|ref|ZP_03672144.1| protein RecA [Borrelia valaisiana VS116]
 gi|224510977|gb|EEF81383.1| protein RecA [Borrelia valaisiana VS116]
          Length = 364

 Score =  355 bits (910), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 172/326 (52%), Positives = 254/326 (77%), Gaps = 4/326 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +A+E A  QI++ +GKG+++++G +  + +GI  +SSGS+ LD ALGIGG+P+GRI+
Sbjct: 18  NKEEAIELARVQIEKTFGKGSLIKMG-ESPVGKGIISISSGSIVLDEALGIGGYPRGRII 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+ LGV++  L +SQPDTG
Sbjct: 77  EIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQPDTG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L+RSG +D+IV+DSVAALTP+ EI+G+MG+S  G+QARLMS+ALRK+T  +
Sbjct: 137 EQALEIAEHLIRSGGIDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKITGIL 196

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKDSITG 247
           S+S   ++FINQ+RM+IG+MFG+PETTTGG+ALKFY+S+RL++R++  +      D + G
Sbjct: 197 SKSNTCIMFINQIRMRIGIMFGNPETTTGGHALKFYASLRLEVRKIEQVTRSGSSDDVIG 256

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+ RVK+VKNK+A PF++VE  I +G+GIS    ++D  +K +++ K+G+W+S    +LG
Sbjct: 257 NKIRVKIVKNKVAPPFRKVELVIYFGKGISREAGILDAAIKHNLIQKTGSWYSLGDNKLG 316

Query: 308 QGRENSKIFLRENIEIAENIESLLRQ 333
           QGRE+   +L + +E+  +++  LR+
Sbjct: 317 QGRESVIEYLSKEVELTNDLDKRLRK 342


>gi|324985136|gb|ADY69166.1| recombinase A repair protein [Vibrio coralliilyticus]
          Length = 235

 Score =  355 bits (910), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 164/235 (69%), Positives = 200/235 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+M
Sbjct: 61  DPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QAR++SQA+RKLT ++ +S C+ + INQ+RMKIGVMFG+PETTTGGNALK Y+
Sbjct: 121 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIVINQIRMKIGVMFGNPETTTGGNALKLYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E  IMYG G +  GEL
Sbjct: 181 SVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQIMYGAGFNREGEL 235


>gi|15384252|gb|AAK96212.1|AF405550_1 recombinase [Helicobacter pylori]
          Length = 248

 Score =  355 bits (910), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 165/247 (66%), Positives = 207/247 (83%), Gaps = 1/247 (0%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+D
Sbjct: 2   EKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFID 61

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AE
Sbjct: 62  AEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAE 121

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGN 221
           I+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +G PETTTGGN
Sbjct: 122 IDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGGPETTTGGN 181

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE 281
           ALKFY+SVR+DIRR+ ++K  +   GN+ + KVVKNK+A PF++ EFDIM+GEGIS  GE
Sbjct: 182 ALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGE 241

Query: 282 LIDLGVK 288
           +ID GVK
Sbjct: 242 IIDYGVK 248


>gi|67926019|ref|ZP_00519282.1| RecA bacterial DNA recombination protein [Crocosphaera watsonii WH
           8501]
 gi|67852132|gb|EAM47628.1| RecA bacterial DNA recombination protein [Crocosphaera watsonii WH
           8501]
          Length = 358

 Score =  355 bits (910), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 191/327 (58%), Positives = 249/327 (76%), Gaps = 4/327 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  DK KAL   L+QI+R +GKG+IM+LG    +   +E +S+G+L LD+ALG GG P G
Sbjct: 6   NNPDKEKALGLVLNQIERNFGKGSIMRLGDAARM--KVETISTGALTLDLALG-GGLPMG 62

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTLALH IA+ QK GG  AFVDAEHALD  Y+  LGVD+ NLL++QP
Sbjct: 63  RIVEIYGPESSGKTTLALHAIAEVQKAGGVAAFVDAEHALDPTYSGALGVDIDNLLVAQP 122

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGE ALEI D LVRS AVD++V+DSVAAL PRAEIEG+MG++  G+QARLMS+ALRK+ 
Sbjct: 123 DTGESALEIVDQLVRSAAVDVVVVDSVAALVPRAEIEGEMGDTQVGLQARLMSKALRKIA 182

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSIT 246
            +I +S C+++F+NQ+R KIGV +GSPE TTGG ALKFY+SVRLDIRR+ ++K   +   
Sbjct: 183 GNIGKSGCVVIFLNQLRQKIGVTYGSPEVTTGGTALKFYASVRLDIRRIQTLKKGSEGEY 242

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G + +VKV KNK+A PF+  EFDI++G GIS  G ++DL  +  +V + GAW+S+ G  +
Sbjct: 243 GIRAKVKVAKNKVAPPFRISEFDIIFGSGISQMGCMLDLAEQCDVVVRKGAWYSYNGDNI 302

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333
            QGR+N+  +L EN +IAE IE  +R+
Sbjct: 303 SQGRDNAVKYLEENPKIAETIEQQVRE 329


>gi|29421222|gb|AAO62570.1| recombinase A [Pantoea ananatis]
          Length = 243

 Score =  354 bits (909), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 167/244 (68%), Positives = 207/244 (84%), Gaps = 2/244 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPE+SGKTTL L  IA
Sbjct: 1   GSIMRLGEARSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I
Sbjct: 59  AAQRKGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVI 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           ++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGV
Sbjct: 119 IVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D++ G++TRVKVVKNK+A+PFKQ EF 
Sbjct: 179 MFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSETRVKVVKNKIAAPFKQAEFQ 238

Query: 270 IMYG 273
             +G
Sbjct: 239 FFFG 242


>gi|223470138|gb|ACM90396.1| recombinase A [Streptococcus salivarius]
 gi|223470154|gb|ACM90404.1| recombinase A [Streptococcus vestibularis ATCC 49124]
 gi|223470156|gb|ACM90405.1| recombinase A [Streptococcus vestibularis]
          Length = 276

 Score =  354 bits (908), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 170/278 (61%), Positives = 220/278 (79%), Gaps = 6/278 (2%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           GA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +A
Sbjct: 1   GAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           Q+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++
Sbjct: 59  QTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLV 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+G+
Sbjct: 119 VVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGI 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQ 265
           MFG+PETT GG ALKFY+SVRLD+R    IK     KD   G +T++KVVKNK+A PFK+
Sbjct: 179 MFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDKKDQNVGKETKIKVVKNKVAPPFKE 238

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
              +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G
Sbjct: 239 AFVEIMYGEGISQTGELVKIASDLGIIQKAGAWFSYNG 276


>gi|289806435|ref|ZP_06537064.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 256

 Score =  354 bits (908), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 169/248 (68%), Positives = 210/248 (84%), Gaps = 2/248 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243

Query: 251 RVKVVKNK 258
           RVKVVK +
Sbjct: 244 RVKVVKKQ 251


>gi|156902078|gb|ABU96832.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  354 bits (908), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 164/234 (70%), Positives = 201/234 (85%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           L LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA
Sbjct: 1   LSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           +KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  
Sbjct: 61  KKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHM 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD
Sbjct: 121 GLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 180

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
           IRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLG
Sbjct: 181 IRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLG 234


>gi|166220784|sp|Q4AAV6|RECA_MYCHJ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|144227436|gb|AAZ44129.2| recombination protein [Mycoplasma hyopneumoniae J]
          Length = 337

 Score =  353 bits (907), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 168/332 (50%), Positives = 246/332 (74%), Gaps = 6/332 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M  +++   L+ AL++I++ +G  +IM LG +  I    EV SSGS+ +D+ALGIGGFPK
Sbjct: 1   MTEINEKSLLKQALAEIKKKFGNESIMVLGEKPPI--DTEVFSSGSMAIDMALGIGGFPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYGPESSGKTT++LH IA+ QK GG  AF+DAEH++D  YA+ LG+D+ NL++SQ
Sbjct: 59  GRIVEIYGPESSGKTTISLHAIAEVQKQGGIAAFIDAEHSIDPQYAKNLGIDIDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+GEQAL+I D L ++ A+D+IV+DSVAAL P AE++G+M + + G QARLMS+ALRK+
Sbjct: 119 PDSGEQALDIVDTLTKTKAIDLIVVDSVAALVPMAELQGEMKDQVIGAQARLMSKALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+S++++   ++FINQ+R K+GV+FG+PETT GG  LKFY+S+RLD+R++  I   + IT
Sbjct: 179 TASLNKNGTTVIFINQIREKVGVIFGNPETTPGGRGLKFYASIRLDVRKIQQITSGNDIT 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G+  ++KVVKNK+A PFK    +I++ +GIS   E+  LG +  I+ + G+WF++KG+ +
Sbjct: 239 GHSVKIKVVKNKLAIPFKTALVEIVFAKGISKSAEIAQLGEELGILVRKGSWFAYKGENI 298

Query: 307 GQGRENSKIFLRENI----EIAENIESLLRQN 334
            QG+ N K+ L  N     EI + I   L++N
Sbjct: 299 AQGKVNLKLLLENNTKLFNEIKDQIIEKLKEN 330


>gi|315021931|gb|ADT70833.1| recombinase A [Pectobacterium wasabiae]
          Length = 240

 Score =  353 bits (906), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 168/242 (69%), Positives = 205/242 (84%), Gaps = 2/242 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IKD + + G++TRVKVVKNK+A+PFKQ EF
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVGSETRVKVVKNKVAAPFKQAEF 238

Query: 269 DI 270
            I
Sbjct: 239 QI 240


>gi|179185055|gb|ACB78168.1| RecA [Vibrio sp. CECT 7224]
          Length = 239

 Score =  353 bits (906), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 164/227 (72%), Positives = 196/227 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +QK G TCAFVDAE
Sbjct: 13  VETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAE 72

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIE
Sbjct: 73  HALDPIYAHKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIE 132

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 133 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALK 192

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           FY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I+
Sbjct: 193 FYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQIL 239


>gi|47459350|ref|YP_016212.1| recombinase A [Mycoplasma mobile 163K]
 gi|59798284|sp|Q6KHC9|RECA_MYCMO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|47458680|gb|AAT28001.1| recombination protein recA [Mycoplasma mobile 163K]
          Length = 331

 Score =  353 bits (906), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 162/307 (52%), Positives = 231/307 (75%), Gaps = 2/307 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           K ++  L +I++ +GK +IM LGS+  +   +E+ S+GSL +D ALGI GFPKGRI+EIY
Sbjct: 3   KEIKNILMEIEKKFGKESIMLLGSKQDL--NVEIFSTGSLAIDHALGINGFPKGRIIEIY 60

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTT+ALH IA+ QK+GG  AF+DAEH++D  YA+ LGV++ NL++SQPD+GEQA
Sbjct: 61  GPESSGKTTIALHAIAEIQKSGGVAAFIDAEHSIDPNYAKNLGVNIDNLILSQPDSGEQA 120

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI D+L +S ++D+IV+DSVAAL P  E+ G+M + + G QARLMS+ALRK+T S+++S
Sbjct: 121 LEIVDILAKSSSIDLIVVDSVAALVPEVELNGEMKDQVMGAQARLMSKALRKITGSLNKS 180

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
           K  ++FINQ+R KIG  FG+PETT GG ALKFYSS+RLD+R+V S+   + I+GN  ++K
Sbjct: 181 KTTVIFINQIREKIGTFFGNPETTPGGRALKFYSSIRLDVRKVSSVSTGEVISGNNIKIK 240

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VVKNK+++PFK+   +I++ +GIS   E ++      I+ + GAWF +  Q + QG+ N 
Sbjct: 241 VVKNKLSAPFKEAFTEIVFSKGISKISEAVEFAENLKIITRKGAWFYYNDQNIAQGKSNL 300

Query: 314 KIFLREN 320
           K  L +N
Sbjct: 301 KDLLEKN 307


>gi|54020324|ref|YP_115556.1| recombinase A [Mycoplasma hyopneumoniae 232]
 gi|59798156|sp|Q602A9|RECA_MYCH2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166220783|sp|Q4A8X3|RECA_MYCH7 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|53987497|gb|AAV27698.1| recA protein [Mycoplasma hyopneumoniae 232]
 gi|144575252|gb|AAZ53416.2| recombination protein [Mycoplasma hyopneumoniae 7448]
 gi|312601007|gb|ADQ90262.1| recombinase A [Mycoplasma hyopneumoniae 168]
          Length = 337

 Score =  353 bits (905), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 167/332 (50%), Positives = 246/332 (74%), Gaps = 6/332 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M  +++   L+ AL++I++ +G  +IM LG +  I    EV SSGS+ +D+ALGIGGFPK
Sbjct: 1   MTEINEKSLLKQALAEIKKKFGNESIMVLGEKPPI--DTEVFSSGSMAIDMALGIGGFPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTT++LH IA+ QK GG  AF+DAEH++D  YA+ LG+D+ NL++SQ
Sbjct: 59  GRIIEIYGPESSGKTTISLHAIAEVQKQGGIAAFIDAEHSIDPQYAKNLGIDIDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+GEQAL+I D L ++ A+D+IV+DSVAAL P AE++G+M + + G QARLMS+ALRK+
Sbjct: 119 PDSGEQALDIVDTLTKTKAIDLIVVDSVAALVPMAELQGEMKDQVIGAQARLMSKALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+S++++   ++FINQ+R K+GV+FG+PETT GG  LKFY+S+RLD+R++  I   + IT
Sbjct: 179 TASLNKNGTTVIFINQIREKVGVIFGNPETTPGGRGLKFYASIRLDVRKIQQITSGNDIT 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G+  ++KVVKNK+A PFK    +I++ +GIS   E+  LG +  I+ + G+WF++KG+ +
Sbjct: 239 GHSVKIKVVKNKLAIPFKTALVEIVFAKGISKSAEIAQLGEELGILVRKGSWFAYKGENI 298

Query: 307 GQGRENSKIFLRENI----EIAENIESLLRQN 334
            QG+ N K+ L  N     EI + I   L++N
Sbjct: 299 AQGKVNLKLLLENNTKLFNEIKDQIIEKLKEN 330


>gi|315021919|gb|ADT70827.1| recombinase A [Pectobacterium carotovorum]
 gi|315021923|gb|ADT70829.1| recombinase A [Pectobacterium carotovorum]
          Length = 239

 Score =  353 bits (905), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 167/241 (69%), Positives = 204/241 (84%), Gaps = 2/241 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q
Sbjct: 1   MRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           + G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++D
Sbjct: 59  REGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVD 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIGVMFG
Sbjct: 119 SVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF IMY
Sbjct: 179 NPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEFQIMY 238

Query: 273 G 273
           G
Sbjct: 239 G 239


>gi|307266022|ref|ZP_07547569.1| recA protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918984|gb|EFN49211.1| recA protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 309

 Score =  353 bits (905), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 183/294 (62%), Positives = 233/294 (79%), Gaps = 10/294 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+ A++ I++ +GKGAI++LG + ++   IEV+ +G L LDI LGIGG  +GRI+
Sbjct: 3   EKEKALKMAIAAIEKKFGKGAIIKLGDRPNL--DIEVIPTGCLELDITLGIGGISRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTLALH IA++QK GGT AFVDAEHALD IYA+ LGVD+  LL++QPDTG
Sbjct: 61  EIFGPESSGKTTLALHMIAEAQKLGGTAAFVDAEHALDPIYAKNLGVDIDELLVAQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L+RSGAVDIIVIDSVAAL PRAEIEG+MGES  G+QARLMSQALRKLT + 
Sbjct: 121 EQALEIVEALIRSGAVDIIVIDSVAALVPRAEIEGEMGESQVGLQARLMSQALRKLTGTA 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+SK  ++FINQ+R KIGV FG+PETT GG AL+FY+ VR+D+R+  +IK  D + G++ 
Sbjct: 181 SKSKTAVIFINQLREKIGVTFGNPETTPGGRALRFYAMVRIDVRKGDNIKQGDKVVGSKI 240

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           ++KVVKNK+A PFKQ E ++M+GEGIS  G L+DLG K         WF+ K Q
Sbjct: 241 KIKVVKNKLAPPFKQAEVNMMFGEGISKEGSLLDLGAK--------IWFNRKKQ 286


>gi|240047769|ref|YP_002961157.1| recombinase A [Mycoplasma conjunctivae HRC/581]
 gi|239985341|emb|CAT05354.1| Protein recA [Mycoplasma conjunctivae]
          Length = 329

 Score =  353 bits (905), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 169/326 (51%), Positives = 241/326 (73%), Gaps = 6/326 (1%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           +K L+ AL  I++ +G  +IM LG +  +    EV SSGSL +D ALG+GGFPKGRI+EI
Sbjct: 4   AKLLKQALIDIKKKFGNESIMVLGERPPV--DTEVFSSGSLSIDKALGVGGFPKGRIIEI 61

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           +GPESSGKTT+ LH IA+ QK GG  AF+DAEHA+D  YA+ LG+D+ NL++SQPD+GEQ
Sbjct: 62  FGPESSGKTTITLHAIAEVQKQGGIAAFIDAEHAIDPQYAKNLGIDIDNLILSQPDSGEQ 121

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           AL+I D LV++GA+D+IV+DSVAAL P AE+EG+M + + G QARLMS+ALRK+T+S+++
Sbjct: 122 ALDIVDTLVKTGAIDLIVVDSVAALVPTAELEGEMKDQVIGAQARLMSKALRKITASLNK 181

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           +   ++FINQ+R K+GV+FG+PETT GG  LKFYSS+RLD+R++  I   + ITG+  ++
Sbjct: 182 NGTTVIFINQIREKVGVIFGNPETTPGGRGLKFYSSIRLDVRKIQQISTGNDITGHTVKI 241

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK+A PFK    +I++ +GIS   E+  L  +  I+++ G+WF++ GQ + QG+ N
Sbjct: 242 KVVKNKLAIPFKTALVEIIFSKGISKAAEIAQLAEEMLILERKGSWFAYNGQNIAQGKAN 301

Query: 313 SKIFLRENI----EIAENIESLLRQN 334
            ++ L  N     E+   IES L+ N
Sbjct: 302 LRLLLENNSNLFNELKNIIESKLKDN 327


>gi|223945977|gb|ACN27072.1| unknown [Zea mays]
          Length = 433

 Score =  353 bits (905), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 176/344 (51%), Positives = 240/344 (69%), Gaps = 23/344 (6%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           +VD+ K L+AA++ I   +GKG++ +LGS G  F  +E   SG L LD ALG GG PKGR
Sbjct: 63  LVDRQKVLDAAMNDINNSFGKGSVTRLGSAGGAF--VETFPSGCLTLDFALG-GGLPKGR 119

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VE+YGPESSGKTTLALH IA+ QK GG    VDAEHA D  Y++ LGVD++NL++ QPD
Sbjct: 120 VVEVYGPESSGKTTLALHAIAEIQKLGGNAMLVDAEHAFDPAYSKALGVDIENLIVCQPD 179

Query: 129 TGEQALE------------------ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
            GE ALE                  + D + RSGA+D+I IDSV+ALTPRAEIEG++G  
Sbjct: 180 NGEMALENGTEQLLTASAPQNSAILVADRMCRSGAIDLICIDSVSALTPRAEIEGEIGMQ 239

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
             G+QARLMSQALRK++ + S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++SVR
Sbjct: 240 QMGLQARLMSQALRKMSGNASKAGCTLMFLNQIRYKIGVFYGNPEVTSGGIALKFFASVR 299

Query: 231 LDIRRVGSIKDK--DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           L+IR +G IK    D   G + RV+V K+K++ P+KQ EF+I++GEG+S  G ++D    
Sbjct: 300 LEIRLIGKIKSAKGDEDVGVKVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCVLDCAEL 359

Query: 289 ASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
             +V K G+W+S+K  RLGQGRE +  +LRE+    + IE ++R
Sbjct: 360 MDVVAKKGSWYSYKDIRLGQGREKALQYLRESPTTCDEIEKVVR 403


>gi|308171320|gb|ADO15979.1| RecA [Vibrio brasiliensis LMG 20546]
          Length = 231

 Score =  352 bits (904), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 161/231 (69%), Positives = 198/231 (85%)

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTL L  IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQP
Sbjct: 1   RIVEIYGPESSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQP 60

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT
Sbjct: 61  DTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLT 120

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + G
Sbjct: 121 GNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVG 180

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           N+TR+KVVKNK+A+PFKQ E  I+YG G +  GELIDLGVK  +++K+  W
Sbjct: 181 NETRIKVVKNKIAAPFKQAETQILYGAGFNREGELIDLGVKHKLIEKAAPW 231


>gi|23194259|gb|AAN15077.1| RecA protein [Vibrio cholerae]
          Length = 235

 Score =  352 bits (904), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 163/232 (70%), Positives = 200/232 (86%)

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
           IALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLG
Sbjct: 1   IALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLG 60

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           V++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QA
Sbjct: 61  VNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQA 120

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           R++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR 
Sbjct: 121 RMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRT 180

Query: 237 GSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK
Sbjct: 181 GAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVK 232


>gi|223470136|gb|ACM90395.1| recombinase A [Streptococcus salivarius]
 gi|223470152|gb|ACM90403.1| recombinase A [Streptococcus salivarius]
          Length = 275

 Score =  352 bits (904), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 169/276 (61%), Positives = 219/276 (79%), Gaps = 6/276 (2%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           GA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +A
Sbjct: 1   GAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           Q+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++
Sbjct: 59  QTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLV 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+G+
Sbjct: 119 VVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGI 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQ 265
           MFG+PETT GG ALKFY+SVRLD+R    IK     KD   G +T++KVVKNK+A PFK+
Sbjct: 179 MFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDKKDQNVGKETKIKVVKNKVAPPFKE 238

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
              +IMYGEGIS  GEL+ +     I+ K+GAWFS+
Sbjct: 239 AFVEIMYGEGISQTGELVKIASDLGIIQKAGAWFSY 274


>gi|11245065|gb|AAG33434.1| RecA protein [Vibrio vulnificus]
 gi|11245109|gb|AAG33456.1| RecA protein [Vibrio vulnificus]
          Length = 233

 Score =  352 bits (904), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 163/233 (69%), Positives = 199/233 (85%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDQLLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS 290
           +IK+ D + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGV  S
Sbjct: 181 AIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVNVS 233


>gi|312273248|gb|ADQ56979.1| recombinase A [Vibrio sp. PS0705-5A3]
          Length = 230

 Score =  352 bits (904), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 162/230 (70%), Positives = 200/230 (86%)

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQP
Sbjct: 1   RIVEVYGPESSGKTTLTLELIAAAQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQP 60

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D L RSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT
Sbjct: 61  DTGEQALEICDALARSGAIDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLT 120

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + G
Sbjct: 121 GNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVG 180

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           N+TR+KVVKNK+A+PFKQ E  I+YG+G +  GEL+DLGVK  +V+K+GA
Sbjct: 181 NETRIKVVKNKIAAPFKQAETQILYGQGFNREGELVDLGVKNKLVEKAGA 230


>gi|315139109|gb|ADT80763.1| recombinase A [Dickeya sp. C01]
          Length = 237

 Score =  352 bits (902), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 167/239 (69%), Positives = 204/239 (85%), Gaps = 2/239 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG   S+   +E +S+GSL LDIALG+GG P GRIVEIYGPESSGKTTL L  IA +
Sbjct: 1   IMRLGEDRSM--DVETISTGSLSLDIALGVGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++
Sbjct: 59  QREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIV 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMF
Sbjct: 119 DSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           G+PETTTGGNALKFY+SVRLDIRR+GSIK+ + + G++TRVKVVKNK+A+PFKQ EF I
Sbjct: 179 GNPETTTGGNALKFYASVRLDIRRIGSIKEGEEVVGSETRVKVVKNKVAAPFKQAEFQI 237


>gi|71893394|ref|YP_278840.1| recombinase A [Mycoplasma hyopneumoniae J]
          Length = 329

 Score =  352 bits (902), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 167/323 (51%), Positives = 242/323 (74%), Gaps = 6/323 (1%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L+ AL++I++ +G  +IM LG +  I    EV SSGS+ +D+ALGIGGFPKGRIVEIYGP
Sbjct: 2   LKQALAEIKKKFGNESIMVLGEKPPI--DTEVFSSGSMAIDMALGIGGFPKGRIVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTT++LH IA+ QK GG  AF+DAEH++D  YA+ LG+D+ NL++SQPD+GEQAL+
Sbjct: 60  ESSGKTTISLHAIAEVQKQGGIAAFIDAEHSIDPQYAKNLGIDIDNLILSQPDSGEQALD 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L ++ A+D+IV+DSVAAL P AE++G+M + + G QARLMS+ALRK+T+S++++  
Sbjct: 120 IVDTLTKTKAIDLIVVDSVAALVPMAELQGEMKDQVIGAQARLMSKALRKITASLNKNGT 179

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
            ++FINQ+R K+GV+FG+PETT GG  LKFY+S+RLD+R++  I   + ITG+  ++KVV
Sbjct: 180 TVIFINQIREKVGVIFGNPETTPGGRGLKFYASIRLDVRKIQQITSGNDITGHSVKIKVV 239

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK+A PFK    +I++ +GIS   E+  LG +  I+ + G+WF++KG+ + QG+ N K+
Sbjct: 240 KNKLAIPFKTALVEIVFAKGISKSAEIAQLGEELGILVRKGSWFAYKGENIAQGKVNLKL 299

Query: 316 FLRENI----EIAENIESLLRQN 334
            L  N     EI + I   L++N
Sbjct: 300 LLENNTKLFNEIKDQIIEKLKEN 322


>gi|30266983|gb|AAP21600.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum]
          Length = 245

 Score =  352 bits (902), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 169/246 (68%), Positives = 205/246 (83%), Gaps = 2/246 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 2   KGFIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 60  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 120 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A  FKQ EF
Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEELVGSETRVKVVKNKVAHRFKQAEF 239

Query: 269 DIMYGE 274
            IMY E
Sbjct: 240 QIMYCE 245


>gi|224115208|ref|XP_002332188.1| predicted protein [Populus trichocarpa]
 gi|222875295|gb|EEF12426.1| predicted protein [Populus trichocarpa]
          Length = 387

 Score =  351 bits (901), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 176/329 (53%), Positives = 236/329 (71%), Gaps = 11/329 (3%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
            +DK KALEAA++ I   +GKG++ +LGS G     +E   SG L LD ALG GG PKGR
Sbjct: 52  FLDKQKALEAAMNDINNSFGKGSVTRLGSAGGAL--VETFPSGCLTLDFALG-GGLPKGR 108

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEI+GPESSGKTTLALH IA+ QK GG    VDAEHA D  Y++ LGVD++NL++ QPD
Sbjct: 109 IVEIFGPESSGKTTLALHAIAEVQKFGGHAMLVDAEHAFDPAYSKALGVDVENLIVCQPD 168

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GE ALEI D + RSGAVD+I +DSV+ALTPRAEIEG++G    G+QARLMSQALRK++ 
Sbjct: 169 NGEMALEIADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSG 228

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           + S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++SVRL+IR  G IK   S+ G+
Sbjct: 229 NASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIK---SVKGD 285

Query: 249 QTRVKVV-----KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
           +     V     K+K++ P+KQ EF+I++GEG+S  G ++D      +V K G+W+S+  
Sbjct: 286 EDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSQLGCILDCAEMMDVVVKKGSWYSYGD 345

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLR 332
            RLGQGR+ +  +LR+N  + E IE  +R
Sbjct: 346 HRLGQGRDKALQYLRDNPHLQEEIEKKVR 374


>gi|72080381|ref|YP_287439.1| recombinase A [Mycoplasma hyopneumoniae 7448]
          Length = 329

 Score =  351 bits (901), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 166/323 (51%), Positives = 242/323 (74%), Gaps = 6/323 (1%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L+ AL++I++ +G  +IM LG +  I    EV SSGS+ +D+ALGIGGFPKGRI+EIYGP
Sbjct: 2   LKQALAEIKKKFGNESIMVLGEKPPI--DTEVFSSGSMAIDMALGIGGFPKGRIIEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTT++LH IA+ QK GG  AF+DAEH++D  YA+ LG+D+ NL++SQPD+GEQAL+
Sbjct: 60  ESSGKTTISLHAIAEVQKQGGIAAFIDAEHSIDPQYAKNLGIDIDNLILSQPDSGEQALD 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L ++ A+D+IV+DSVAAL P AE++G+M + + G QARLMS+ALRK+T+S++++  
Sbjct: 120 IVDTLTKTKAIDLIVVDSVAALVPMAELQGEMKDQVIGAQARLMSKALRKITASLNKNGT 179

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
            ++FINQ+R K+GV+FG+PETT GG  LKFY+S+RLD+R++  I   + ITG+  ++KVV
Sbjct: 180 TVIFINQIREKVGVIFGNPETTPGGRGLKFYASIRLDVRKIQQITSGNDITGHSVKIKVV 239

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK+A PFK    +I++ +GIS   E+  LG +  I+ + G+WF++KG+ + QG+ N K+
Sbjct: 240 KNKLAIPFKTALVEIVFAKGISKSAEIAQLGEELGILVRKGSWFAYKGENIAQGKVNLKL 299

Query: 316 FLRENI----EIAENIESLLRQN 334
            L  N     EI + I   L++N
Sbjct: 300 LLENNTKLFNEIKDQIIEKLKEN 322


>gi|258562183|gb|ACV81812.1| recombinase A [Burkholderia cenocepacia]
          Length = 223

 Score =  351 bits (901), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 164/223 (73%), Positives = 196/223 (87%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 1   LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 61  SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 120

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK+A P
Sbjct: 121 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPP 180

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G++
Sbjct: 181 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEK 223


>gi|223934262|ref|ZP_03626191.1| recA protein [Streptococcus suis 89/1591]
 gi|223897076|gb|EEF63508.1| recA protein [Streptococcus suis 89/1591]
          Length = 313

 Score =  351 bits (900), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 167/287 (58%), Positives = 222/287 (77%), Gaps = 4/287 (1%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+
Sbjct: 1   PKGRIIEIYGPESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLL 60

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+R
Sbjct: 61  SQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMR 120

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---- 240
           KL +SI+++K + +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+D+R    IK    
Sbjct: 121 KLGASINKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVRGNTQIKGTGD 180

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
            KD   G +T+VK+VKNK+A PFK+   +IMYGEGIS  GELI++G    I+ K+GAW+S
Sbjct: 181 KKDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYS 240

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           + G+++GQG EN+K FL +N  I + I+  +R + GL+    ++E A
Sbjct: 241 YNGEKIGQGSENAKKFLADNPAIFDEIDRKIRVHYGLIEADGVEEVA 287


>gi|11245183|gb|AAG33493.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  351 bits (900), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 163/233 (69%), Positives = 198/233 (84%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEIYGPESSGKTTL L  I+ +Q+ G TCAF+DAEHALD +YAR+LGV
Sbjct: 1   ALGAGGLPMGRIVEIYGPESSGKTTLTLELISAAQREGKTCAFIDAEHALDPVYARRLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
            +  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  KIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS 290
           SIK+ D + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELI+LGV  S
Sbjct: 181 SIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIELGVSTS 233


>gi|255578168|ref|XP_002529953.1| DNA repair protein reca, putative [Ricinus communis]
 gi|223530551|gb|EEF32430.1| DNA repair protein reca, putative [Ricinus communis]
          Length = 343

 Score =  351 bits (900), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 176/345 (51%), Positives = 242/345 (70%), Gaps = 8/345 (2%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           ++ I   +GKG++ +LGS G     +E   SG L LD ALG GG PKGRIVEIYGPESSG
Sbjct: 1   MNDINNSFGKGSVTRLGSAGGAL--VETFPSGCLTLDFALG-GGLPKGRIVEIYGPESSG 57

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTLALH IA+ QK GG    VDAEHA D  Y++ LGVD++NL++ QPD GE ALEI D 
Sbjct: 58  KTTLALHAIAEIQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDNGEMALEIADR 117

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           + RSGAVD+I +DSV+ALTPRAEIEG++G    G+QARLMSQALRK++ + S++ C LVF
Sbjct: 118 MCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLVF 177

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--DSITGNQTRVKVVKN 257
           +NQ+R KIGV +G+PE T+GG ALKF++SVRL+IR  G IK    D   G + RV+V K+
Sbjct: 178 LNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSNGKIKSAKGDEDVGLRVRVRVQKS 237

Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317
           K++ P+KQ EF+I++GEG+S  G ++D      +V K G+W+S+   RLGQGR+ +  +L
Sbjct: 238 KVSRPYKQAEFEIIFGEGVSRLGCVLDCAEMMDVVVKKGSWYSYGEHRLGQGRDRALQYL 297

Query: 318 RENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           R+N  + E IE  +R    ++AD  +   ++ +++     + +NV
Sbjct: 298 RDNPHLHEEIEKKVRS---MMADGTVNTASLYSRNSPLPLEDENV 339


>gi|6694824|gb|AAF25409.1|AF214762_1 RecA protein [Arthrobacter sp. 'SMCC G961']
          Length = 255

 Score =  350 bits (899), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 165/248 (66%), Positives = 206/248 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAE
Sbjct: 3   IEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA KLGVD   LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEIE
Sbjct: 63  HALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG+S  G+QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALK
Sbjct: 123 GDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALK 182

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+S+R+D+RR+ ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS  G +ID
Sbjct: 183 FYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQGISREGGIID 242

Query: 285 LGVKASIV 292
           +GV+  ++
Sbjct: 243 MGVEHGLI 250


>gi|30691949|gb|AAP33471.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum]
          Length = 243

 Score =  350 bits (899), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 167/243 (68%), Positives = 205/243 (84%), Gaps = 2/243 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGFIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEF 238

Query: 269 DIM 271
            I+
Sbjct: 239 QIL 241


>gi|119952934|ref|YP_945143.1| recombinase A [Borrelia turicatae 91E135]
 gi|254790422|sp|A1QYT1|RECA_BORT9 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|119861705|gb|AAX17473.1| RecA protein [Borrelia turicatae 91E135]
          Length = 363

 Score =  350 bits (898), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 186/350 (53%), Positives = 265/350 (75%), Gaps = 6/350 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +++ KA+E A  QI++ +GKG+++++G +  + +GIE +SSGS+ LD A+G+GG+P+GRI
Sbjct: 16  LNREKAIELARIQIEKDFGKGSLIKMG-ESPVGKGIESISSGSILLDEAIGVGGYPRGRI 74

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EI+GPESSGKTTL L  I++ QK GG  AF+DAEHALD +YA+ LGV++  L +SQPDT
Sbjct: 75  IEIFGPESSGKTTLTLQAISEVQKNGGIAAFIDAEHALDPVYAKALGVNIDELWLSQPDT 134

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + L+RSG VD+IV+DSVAALTP+AEI+G+MG+   G+QARLMS+ALRK+T  
Sbjct: 135 GEQALEIAEYLIRSGGVDLIVVDSVAALTPQAEIDGEMGDCQIGLQARLMSKALRKITGI 194

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI--KDKDSITG 247
           +S+SK  ++FINQ+RMKIGVMFG+PETTTGGNALKFYSS+RL++R++  +     D + G
Sbjct: 195 LSKSKTCIMFINQLRMKIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTGSSADDVVG 254

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+ RVKVVKNK+A PF+++E  I +G+GIS    ++D  +K  ++ K G+W+S    +LG
Sbjct: 255 NKVRVKVVKNKVAPPFRKIELVIYFGKGISREASILDASIKYKLIQKIGSWYSIGDDKLG 314

Query: 308 QGRENSKIFLRENIEIAENIESLLRQ--NAGLVADSLLQEPAINTKDDAD 355
           QGRE++ I+L +  E+   +E  LR+    GL  DS+   P  N K D +
Sbjct: 315 QGRESAIIYLIKEKELTNELEIKLRKIIFEGLSPDSIEIGPP-NVKKDKE 363


>gi|306517559|emb|CBO93071.1| DNA recombinase A [Pantoea stewartii subsp. indologenes]
          Length = 233

 Score =  350 bits (898), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 162/229 (70%), Positives = 198/229 (86%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
           G   +S+GSL LDIALG GG P GRIVEIYGPE+SGKTTL L  IA +Q+ G TCAF+DA
Sbjct: 1   GCGTISTGSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIAAAQRKGKTCAFIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEI
Sbjct: 61  EHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 121 EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           KFY+SVRLDIRR+G+IK+ D++ G++TRVKVVKNK+A+PFKQ EF IMY
Sbjct: 181 KFYASVRLDIRRIGAIKEGDNVVGSETRVKVVKNKIAAPFKQAEFQIMY 229


>gi|258562169|gb|ACV81805.1| recombinase A [Burkholderia multivorans]
 gi|258562179|gb|ACV81810.1| recombinase A [Burkholderia dolosa]
 gi|258562195|gb|ACV81818.1| recombinase A [Burkholderia multivorans]
 gi|258562197|gb|ACV81819.1| recombinase A [Burkholderia multivorans]
          Length = 223

 Score =  350 bits (898), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 163/223 (73%), Positives = 197/223 (88%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVR
Sbjct: 1   LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 61  SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 120

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 121 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 180

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G++
Sbjct: 181 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEK 223


>gi|157493229|gb|ABV57980.1| RecA [Vibrio mimicus]
          Length = 229

 Score =  350 bits (898), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 160/228 (70%), Positives = 198/228 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 2   ISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+M
Sbjct: 62  DPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEM 121

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 122 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 181

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275
           SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G
Sbjct: 182 SVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQG 229


>gi|306517557|emb|CBO93070.1| DNA recombinase A [Pantoea stewartii subsp. stewartii]
          Length = 229

 Score =  350 bits (897), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 161/225 (71%), Positives = 197/225 (87%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPE+SGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 2   ISTGSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIAAAQRKGKTCAFIDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++
Sbjct: 62  DPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI 121

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 122 GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 181

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           SVRLDIRR+G+IK+ D++ G++TRVKVVKNK+A+PFKQ EF IMY
Sbjct: 182 SVRLDIRRIGAIKEGDNVVGSETRVKVVKNKIAAPFKQAEFQIMY 226


>gi|258562165|gb|ACV81803.1| recombinase A [Burkholderia cenocepacia]
 gi|258562173|gb|ACV81807.1| recombinase A [Burkholderia cenocepacia]
 gi|258562175|gb|ACV81808.1| recombinase A [Burkholderia cenocepacia]
          Length = 223

 Score =  350 bits (897), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 163/223 (73%), Positives = 196/223 (87%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 1   LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 61  SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 120

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 121 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 180

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G++
Sbjct: 181 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEK 223


>gi|306517549|emb|CBO93063.1| DNA recombinase A [Pantoea stewartii subsp. stewartii]
          Length = 228

 Score =  350 bits (897), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 161/225 (71%), Positives = 197/225 (87%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPE+SGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 2   ISTGSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIAAAQRKGKTCAFIDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++
Sbjct: 62  DPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI 121

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 122 GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 181

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           SVRLDIRR+G+IK+ D++ G++TRVKVVKNK+A+PFKQ EF IMY
Sbjct: 182 SVRLDIRRIGAIKEGDNVVGSETRVKVVKNKIAAPFKQAEFQIMY 226


>gi|194246536|ref|YP_002004175.1| Recombinase A [Candidatus Phytoplasma mali]
 gi|254790440|sp|B3R0F8|RECA_PHYMT RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|193806893|emb|CAP18322.1| Recombinase A [Candidatus Phytoplasma mali]
          Length = 339

 Score =  350 bits (897), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 160/322 (49%), Positives = 245/322 (76%), Gaps = 4/322 (1%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           K LE  + ++++ +GKG+I +L S  +  + IE +S+GS+ LDIALGIGG+PKGRI+EI+
Sbjct: 16  KILEETIKEVEKQFGKGSIFKLNSNNN--QSIETISTGSMSLDIALGIGGYPKGRIIEIF 73

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTL LH IA++QK GG  AF+DAEHALD  YA+ +GV++  L++SQPD+GE+A
Sbjct: 74  GPESSGKTTLTLHAIAEAQKLGGNVAFIDAEHALDPKYAQAIGVNIDELVLSQPDSGEKA 133

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           L+I   L++SG++ ++VIDSVAALTP +E+ G+M +   G+QAR+M +A+R  +  IS++
Sbjct: 134 LDIATSLIKSGSISLLVIDSVAALTPESELMGEMKDINVGLQARMMGKAMRIQSGIISKT 193

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIK-DKDSITGNQTR 251
             ++++INQ+R K+G  +G+PE TTGG ALKF+ S+RLDIRR    IK + D I G ++ 
Sbjct: 194 NTVVIYINQLREKVGNFYGNPEVTTGGKALKFFCSLRLDIRRTAEKIKNNNDEIIGVKSN 253

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           +K+VK+K+++PFK    DI+YG+GIS  GE++DL +  +++ ++GAW+++K +   QG+E
Sbjct: 254 IKIVKSKVSTPFKTATVDIIYGKGISKIGEILDLAIDLNLIKRNGAWYNYKNENFAQGKE 313

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
           N+KIFL+ N+EI   +E  +R+
Sbjct: 314 NAKIFLQNNLEIYNFLEEQIRK 335


>gi|145577847|gb|ABP87374.1| RecA [Vibrio ruber]
          Length = 233

 Score =  350 bits (897), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 164/235 (69%), Positives = 203/235 (86%), Gaps = 2/235 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD +YA+KLGVD++ LL+SQPDTGEQALEI D L RSGA+D
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPVYAKKLGVDIEALLVSQPDTGEQALEICDALARSGAID 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           GVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+P
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAP 233


>gi|179185317|gb|ACB78178.1| RecA [Vibrio inusitatus]
          Length = 237

 Score =  349 bits (896), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 161/231 (69%), Positives = 198/231 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIV +YGP+SSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 6   VETISTGSLSLDIALGAGGLPMGRIVXVYGPKSSGKTTLTLELIAAAQREGKTCAFIDAE 65

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE
Sbjct: 66  HALDPIYAQKLGVNIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEIE 125

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+ MKIGVMFG+PETTTGGNALK
Sbjct: 126 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQICMKIGVMFGNPETTTGGNALK 185

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275
           FY+SV LDIRR G+IKD D I GN+TR+KVVKNK+A+PFKQ E  IMYG+G
Sbjct: 186 FYASVXLDIRRTGAIKDGDXIVGNETRIKVVKNKIAAPFKQAETQIMYGQG 236


>gi|258562159|gb|ACV81800.1| recombinase A [Burkholderia cenocepacia]
 gi|258562167|gb|ACV81804.1| recombinase A [Burkholderia cenocepacia]
 gi|258562187|gb|ACV81814.1| recombinase A [Burkholderia cenocepacia]
 gi|258562193|gb|ACV81817.1| recombinase A [Burkholderia vietnamiensis]
 gi|258562199|gb|ACV81820.1| recombinase A [Burkholderia vietnamiensis]
 gi|258562201|gb|ACV81821.1| recombinase A [Burkholderia vietnamiensis]
          Length = 223

 Score =  349 bits (896), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 163/223 (73%), Positives = 196/223 (87%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 1   LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 61  SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 120

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 121 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 180

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G++
Sbjct: 181 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEK 223


>gi|11245107|gb|AAG33455.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  349 bits (896), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 161/230 (70%), Positives = 198/230 (86%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGV
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNRXGELIDLGV 230


>gi|30266947|gb|AAP21582.1| recombinase A [Erwinia mallotivora]
          Length = 239

 Score =  349 bits (896), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 165/241 (68%), Positives = 204/241 (84%), Gaps = 2/241 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I+
Sbjct: 59  AQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVII 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSETRVKVVKNKVAAPFKQAEVQI 238

Query: 271 M 271
           M
Sbjct: 239 M 239


>gi|11245001|gb|AAG33402.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  349 bits (896), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 162/230 (70%), Positives = 198/230 (86%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPIYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGV
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGV 230


>gi|11244987|gb|AAG33395.1| RecA protein [Vibrio cholerae]
 gi|11245003|gb|AAG33403.1| RecA protein [Vibrio cholerae]
 gi|11245005|gb|AAG33404.1| RecA protein [Vibrio cholerae]
 gi|11245089|gb|AAG33446.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  349 bits (896), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 161/230 (70%), Positives = 198/230 (86%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGV
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGV 230


>gi|11244977|gb|AAG33390.1| RecA protein [Vibrio cholerae]
 gi|11244993|gb|AAG33398.1| RecA protein [Vibrio cholerae]
 gi|11244999|gb|AAG33401.1| RecA protein [Vibrio cholerae]
 gi|11245023|gb|AAG33413.1| RecA protein [Vibrio cholerae]
 gi|11245173|gb|AAG33488.1| RecA protein [Vibrio mimicus]
          Length = 234

 Score =  349 bits (895), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 161/230 (70%), Positives = 198/230 (86%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGV
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGV 230


>gi|11245037|gb|AAG33420.1| RecA protein [Vibrio cholerae]
 gi|11245061|gb|AAG33432.1| RecA protein [Vibrio cholerae]
 gi|11245073|gb|AAG33438.1| RecA protein [Vibrio cholerae]
 gi|11245077|gb|AAG33440.1| RecA protein [Vibrio cholerae]
 gi|11245091|gb|AAG33447.1| RecA protein [Vibrio cholerae]
 gi|11245101|gb|AAG33452.1| RecA protein [Vibrio cholerae]
 gi|11245111|gb|AAG33457.1| RecA protein [Vibrio cholerae]
 gi|11245115|gb|AAG33459.1| RecA protein [Vibrio cholerae]
 gi|11245135|gb|AAG33469.1| RecA protein [Vibrio cholerae]
 gi|11245155|gb|AAG33479.1| RecA protein [Vibrio cholerae]
 gi|11245171|gb|AAG33487.1| RecA protein [Vibrio cholerae]
 gi|11245175|gb|AAG33489.1| RecA protein [Vibrio cholerae]
 gi|11245177|gb|AAG33490.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  349 bits (895), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 161/230 (70%), Positives = 198/230 (86%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGV
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGV 230


>gi|11245021|gb|AAG33412.1| RecA protein [Vibrio cholerae MO10]
          Length = 234

 Score =  349 bits (895), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 161/230 (70%), Positives = 198/230 (86%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGV
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGV 230


>gi|308171326|gb|ADO15982.1| RecA [Vibrio sinaloensis DSM 21326]
          Length = 228

 Score =  349 bits (895), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 161/228 (70%), Positives = 197/228 (86%)

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTL L  IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQP
Sbjct: 1   RIVEIYGPESSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQP 60

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT
Sbjct: 61  DTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLT 120

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + G
Sbjct: 121 GNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVG 180

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           N+TR+KVVKNK+A+PFKQ E  I+YG G +  GELIDLGVK  +V+K+
Sbjct: 181 NETRIKVVKNKIAAPFKQAETQILYGAGFNREGELIDLGVKHKLVEKA 228


>gi|258562161|gb|ACV81801.1| recombinase A [Burkholderia pyrrocinia]
 gi|258562163|gb|ACV81802.1| recombinase A [Burkholderia stabilis]
          Length = 223

 Score =  349 bits (895), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 162/223 (72%), Positives = 196/223 (87%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 1   LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 61  SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 120

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 121 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 180

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G++
Sbjct: 181 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEK 223


>gi|11244985|gb|AAG33394.1| RecA protein [Vibrio cholerae]
 gi|11244989|gb|AAG33396.1| RecA protein [Vibrio cholerae]
 gi|11244997|gb|AAG33400.1| RecA protein [Vibrio cholerae]
 gi|11245007|gb|AAG33405.1| RecA protein [Vibrio cholerae]
 gi|11245011|gb|AAG33407.1| RecA protein [Vibrio cholerae]
 gi|11245013|gb|AAG33408.1| RecA protein [Vibrio cholerae]
 gi|11245027|gb|AAG33415.1| RecA protein [Vibrio cholerae]
 gi|11245033|gb|AAG33418.1| RecA protein [Vibrio cholerae]
 gi|11245035|gb|AAG33419.1| RecA protein [Vibrio cholerae]
 gi|11245045|gb|AAG33424.1| RecA protein [Vibrio cholerae]
 gi|11245055|gb|AAG33429.1| RecA protein [Vibrio cholerae]
 gi|11245105|gb|AAG33454.1| RecA protein [Vibrio cholerae]
 gi|11245143|gb|AAG33473.1| RecA protein [Vibrio cholerae]
 gi|11245145|gb|AAG33474.1| RecA protein [Vibrio cholerae]
 gi|11245149|gb|AAG33476.1| RecA protein [Vibrio cholerae]
 gi|11245151|gb|AAG33477.1| RecA protein [Vibrio cholerae]
 gi|11245153|gb|AAG33478.1| RecA protein [Vibrio mimicus]
 gi|11245157|gb|AAG33480.1| RecA protein [Vibrio cholerae]
 gi|11245165|gb|AAG33484.1| RecA protein [Vibrio mimicus]
 gi|11245167|gb|AAG33485.1| RecA protein [Vibrio mimicus]
          Length = 234

 Score =  349 bits (895), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 161/230 (70%), Positives = 198/230 (86%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGV
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGV 230


>gi|11245009|gb|AAG33406.1| RecA protein [Vibrio cholerae]
 gi|11245049|gb|AAG33426.1| RecA protein [Vibrio cholerae]
 gi|11245083|gb|AAG33443.1| RecA protein [Vibrio cholerae]
 gi|11245093|gb|AAG33448.1| RecA protein [Vibrio cholerae]
 gi|11245095|gb|AAG33449.1| RecA protein [Vibrio cholerae]
 gi|11245133|gb|AAG33468.1| RecA protein [Vibrio cholerae]
 gi|11245169|gb|AAG33486.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  349 bits (895), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 161/230 (70%), Positives = 198/230 (86%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGV
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGV 230


>gi|11244965|gb|AAG33384.1| RecA protein [Vibrio cholerae]
 gi|11244975|gb|AAG33389.1| RecA protein [Vibrio cholerae]
 gi|11244979|gb|AAG33391.1| RecA protein [Vibrio cholerae]
 gi|11244981|gb|AAG33392.1| RecA protein [Vibrio cholerae]
 gi|11244983|gb|AAG33393.1| RecA protein [Vibrio cholerae]
 gi|11245015|gb|AAG33409.1| RecA protein [Vibrio cholerae]
 gi|11245017|gb|AAG33410.1| RecA protein [Vibrio cholerae]
 gi|11245029|gb|AAG33416.1| RecA protein [Vibrio cholerae]
 gi|11245031|gb|AAG33417.1| RecA protein [Vibrio cholerae]
 gi|11245039|gb|AAG33421.1| RecA protein [Vibrio cholerae]
 gi|11245041|gb|AAG33422.1| RecA protein [Vibrio cholerae]
 gi|11245047|gb|AAG33425.1| RecA protein [Vibrio cholerae]
 gi|11245051|gb|AAG33427.1| RecA protein [Vibrio cholerae]
 gi|11245053|gb|AAG33428.1| RecA protein [Vibrio cholerae]
 gi|11245057|gb|AAG33430.1| RecA protein [Vibrio cholerae]
 gi|11245059|gb|AAG33431.1| RecA protein [Vibrio cholerae]
 gi|11245071|gb|AAG33437.1| RecA protein [Vibrio cholerae]
 gi|11245075|gb|AAG33439.1| RecA protein [Vibrio cholerae]
 gi|11245079|gb|AAG33441.1| RecA protein [Vibrio cholerae]
 gi|11245081|gb|AAG33442.1| RecA protein [Vibrio cholerae]
 gi|11245085|gb|AAG33444.1| RecA protein [Vibrio cholerae]
 gi|11245087|gb|AAG33445.1| RecA protein [Vibrio cholerae]
 gi|11245097|gb|AAG33450.1| RecA protein [Vibrio cholerae]
 gi|11245099|gb|AAG33451.1| RecA protein [Vibrio cholerae]
 gi|11245103|gb|AAG33453.1| RecA protein [Vibrio cholerae]
 gi|11245117|gb|AAG33460.1| RecA protein [Vibrio cholerae]
 gi|11245121|gb|AAG33462.1| RecA protein [Vibrio cholerae]
 gi|11245123|gb|AAG33463.1| RecA protein [Vibrio cholerae]
 gi|11245125|gb|AAG33464.1| RecA protein [Vibrio cholerae]
 gi|11245127|gb|AAG33465.1| RecA protein [Vibrio cholerae]
 gi|11245129|gb|AAG33466.1| RecA protein [Vibrio cholerae]
 gi|11245131|gb|AAG33467.1| RecA protein [Vibrio cholerae]
 gi|11245137|gb|AAG33470.1| RecA protein [Vibrio cholerae]
 gi|11245139|gb|AAG33471.1| RecA protein [Vibrio cholerae]
 gi|11245141|gb|AAG33472.1| RecA protein [Vibrio cholerae]
 gi|11245147|gb|AAG33475.1| RecA protein [Vibrio cholerae]
 gi|11245163|gb|AAG33483.1| RecA protein [Vibrio cholerae]
 gi|11245181|gb|AAG33492.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  348 bits (894), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 161/230 (70%), Positives = 198/230 (86%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGV
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGV 230


>gi|219558743|ref|ZP_03537819.1| recombinase A [Mycobacterium tuberculosis T17]
          Length = 305

 Score =  348 bits (894), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 167/263 (63%), Positives = 215/263 (81%), Gaps = 3/263 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI++ YGKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 6   DREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD  +  GN+T
Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYG 273
           RVKVVKNK  +   ++ FD + G
Sbjct: 244 RVKVVKNKCLAEGTRI-FDPVTG 265


>gi|312273244|gb|ADQ56977.1| recombinase A [Vibrio sp. SA0706-05S]
 gi|312273246|gb|ADQ56978.1| recombinase A [Vibrio sp. SA0606-63]
 gi|312273250|gb|ADQ56980.1| recombinase A [Vibrio sp. SA0606-03S]
          Length = 230

 Score =  348 bits (894), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 160/230 (69%), Positives = 199/230 (86%)

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQP
Sbjct: 1   RIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQP 60

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT
Sbjct: 61  DTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLT 120

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + G
Sbjct: 121 GNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVG 180

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           N+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+K+GA
Sbjct: 181 NETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGA 230


>gi|258562185|gb|ACV81813.1| recombinase A [Burkholderia anthina]
 gi|258562189|gb|ACV81815.1| recombinase A [Burkholderia cepacia ATCC 25416]
          Length = 223

 Score =  348 bits (894), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 162/223 (72%), Positives = 196/223 (87%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 1   LTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 61  SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 120

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 121 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 180

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G++
Sbjct: 181 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEK 223


>gi|38455825|gb|AAR20910.1| RecA [Bifidobacterium animalis]
 gi|38455827|gb|AAR20911.1| RecA [Bifidobacterium animalis subsp. lactis]
 gi|38455829|gb|AAR20912.1| RecA [Bifidobacterium animalis subsp. lactis]
 gi|38455831|gb|AAR20913.1| RecA [Bifidobacterium animalis subsp. lactis]
 gi|38455833|gb|AAR20914.1| RecA [Bifidobacterium animalis subsp. lactis]
 gi|38455835|gb|AAR20915.1| RecA [Bifidobacterium animalis subsp. lactis]
 gi|38455837|gb|AAR20916.1| RecA [Bifidobacterium animalis subsp. animalis ATCC 25527]
 gi|38569713|gb|AAR24377.1| RecA [Bifidobacterium animalis]
 gi|38569715|gb|AAR24378.1| RecA [Bifidobacterium animalis]
 gi|38569717|gb|AAR24379.1| RecA [Bifidobacterium animalis]
 gi|38569719|gb|AAR24380.1| RecA [Bifidobacterium animalis subsp. lactis DSM 10140]
          Length = 229

 Score =  348 bits (894), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 161/228 (70%), Positives = 195/228 (85%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALGIGG P+GRIVEIYGPESSGKTTLALH +A +QK GG  AF+DAEHALD +YAR LGV
Sbjct: 1   ALGIGGLPRGRIVEIYGPESSGKTTLALHVVANAQKNGGVAAFIDAEHALDPVYARHLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           D  +L++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEGDMG+S  G+QAR
Sbjct: 61  DTDSLIVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGDMGDSHVGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           LMSQALRK+T +++++    +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+DIRR+ 
Sbjct: 121 LMSQALRKMTGALAQANTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRMDIRRIQ 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           ++KDKD   GN+TRVKVVKNKMA PFK  EFD++YG+GIS  G ++D+
Sbjct: 181 TLKDKDEPIGNRTRVKVVKNKMAPPFKTAEFDMLYGQGISQEGSILDM 228


>gi|255708543|gb|ACU30177.1| RecA [Burkholderia cepacia]
          Length = 225

 Score =  348 bits (894), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 162/225 (72%), Positives = 199/225 (88%)

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD  YA KLGV++  LLI QPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEI
Sbjct: 1   EHALDVQYASKLGVNVPELLILQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEI 60

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 61  EGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNAL 120

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+I
Sbjct: 121 KFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEII 180

Query: 284 DLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           DLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE
Sbjct: 181 DLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 225


>gi|11244971|gb|AAG33387.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  348 bits (894), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 161/230 (70%), Positives = 197/230 (85%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           +IK+ + + GN+TR+KVVKNK+A+PFK     IMYG+G +  GELIDLGV
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKXANTQIMYGQGFNRXGELIDLGV 230


>gi|11245043|gb|AAG33423.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  348 bits (894), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 161/230 (70%), Positives = 197/230 (85%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G    GELIDLGV
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFXREGELIDLGV 230


>gi|6694843|gb|AAF25428.1|AF214781_1 RecA protein [Arthrobacter citreus]
          Length = 263

 Score =  348 bits (893), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 172/260 (66%), Positives = 211/260 (81%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +S+ S+ LD+ALGIGG P+GR+VEIYGPESSGKTTLALH +A +QK GG  AF+DAEH
Sbjct: 4   ETISTSSIALDLALGIGGVPRGRVVEIYGPESSGKTTLALHVVANAQKNGGIAAFIDAEH 63

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YA +LGVD  +LL+SQPDTGEQALEI DML+ SG+VD++VIDSVAAL PRAEIEG
Sbjct: 64  ALDPVYAARLGVDTDSLLVSQPDTGEQALEIMDMLIGSGSVDVVVIDSVAALVPRAEIEG 123

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           DM +S  G+QARLMSQALRK+   +S +    +FINQ+R KIGVMFGSPETTTGG ALKF
Sbjct: 124 DMVDSHVGLQARLMSQALRKIAGRLSHTNTTAIFINQLREKIGVMFGSPETTTGGKALKF 183

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           Y+SVR+D+RR+ ++K+     GN+TR K+VKNKMA PFKQ EFDI+YG GIS  G LID+
Sbjct: 184 YASVRIDVRRIETLKEGTVPVGNRTRAKIVKNKMAPPFKQAEFDIIYGTGISREGGLIDM 243

Query: 286 GVKASIVDKSGAWFSFKGQR 305
           GV+   V KSG WF++ G +
Sbjct: 244 GVEHGFVKKSGVWFTYDGDQ 263


>gi|258562181|gb|ACV81811.1| recombinase A [Burkholderia cenocepacia]
          Length = 223

 Score =  348 bits (893), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 163/223 (73%), Positives = 195/223 (87%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEIT  LVR
Sbjct: 1   LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITGALVR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 61  SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 120

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK+A P
Sbjct: 121 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPP 180

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G++
Sbjct: 181 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEK 223


>gi|169742986|gb|ACA66116.1| recombinase A [Geobacillus thermoleovorans]
 gi|169742988|gb|ACA66117.1| recombinase A [Geobacillus thermocatenulatus]
 gi|169742990|gb|ACA66118.1| recombinase A [Geobacillus stearothermophilus ATCC 7953]
 gi|169742992|gb|ACA66119.1| recombinase A [Geobacillus kaustophilus]
 gi|169742996|gb|ACA66121.1| recombinase A [Bacillus caldolyticus]
 gi|169742998|gb|ACA66122.1| recombinase A [Bacillus caldotenax]
 gi|169743000|gb|ACA66123.1| recombinase A [Bacillus caldovelox]
 gi|169743004|gb|ACA66125.1| recombinase A [Geobacillus vulcani]
          Length = 241

 Score =  348 bits (893), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 167/243 (68%), Positives = 204/243 (83%), Gaps = 2/243 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG Q  +   + VV SGSL LDIALG+GG+P+GRIVEIYGPESSGKTT+ALH IA+ Q
Sbjct: 1   MKLGEQ--VDRKVSVVPSGSLALDIALGVGGYPRGRIVEIYGPESSGKTTVALHAIAEVQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG  AF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI + LVRSGAVDIIVID
Sbjct: 59  KRGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEG+MG++  G+QARLMSQALRKL+ +I++SK I +FINQ+R K+GVMFG
Sbjct: 119 SVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETT GG ALKFY+SVRL++RR   IK  + + GN+T++KVVKNK+A PFK  + DIMY
Sbjct: 179 NPETTPGGRALKFYASVRLEVRRAEQIKQGNDMVGNKTKIKVVKNKVAPPFKTADVDIMY 238

Query: 273 GEG 275
           GEG
Sbjct: 239 GEG 241


>gi|312273084|gb|ADQ56897.1| recombinase A [Vibrio cholerae]
 gi|312273086|gb|ADQ56898.1| recombinase A [Vibrio cholerae]
 gi|312273090|gb|ADQ56900.1| recombinase A [Vibrio cholerae]
          Length = 230

 Score =  348 bits (893), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 161/230 (70%), Positives = 199/230 (86%)

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQP
Sbjct: 1   RIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQP 60

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT
Sbjct: 61  DTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLT 120

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD + + G
Sbjct: 121 GNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVG 180

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           N+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGA
Sbjct: 181 NETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGA 230


>gi|11245185|gb|AAG33494.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  348 bits (893), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 160/230 (69%), Positives = 198/230 (86%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           A+G GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   AIGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGV
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGV 230


>gi|315021917|gb|ADT70826.1| recombinase A [Pectobacterium carotovorum]
 gi|315021929|gb|ADT70832.1| recombinase A [Pectobacterium carotovorum]
          Length = 237

 Score =  348 bits (892), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 165/239 (69%), Positives = 202/239 (84%), Gaps = 2/239 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q
Sbjct: 1   MRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           + G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++D
Sbjct: 59  REGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVD 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIGVMFG
Sbjct: 119 SVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           +PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF IM
Sbjct: 179 NPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEFQIM 237


>gi|11245113|gb|AAG33458.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  348 bits (892), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 161/230 (70%), Positives = 197/230 (85%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           +IK+ + + GN+TR+KVVKNK+A+PFK     IMYG+G +  GELIDLGV
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKXANTQIMYGQGFNREGELIDLGV 230


>gi|312273258|gb|ADQ56984.1| recombinase A [Vibrio sp. K0406-01S]
          Length = 230

 Score =  348 bits (892), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 159/230 (69%), Positives = 199/230 (86%)

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQP
Sbjct: 1   RIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQP 60

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT
Sbjct: 61  DTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLT 120

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + G
Sbjct: 121 GNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVG 180

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           N+TR+KVVKNK+A+PFK+    IMYG+G +  GEL+DLGVK  +V+K+GA
Sbjct: 181 NETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKAGA 230


>gi|258562171|gb|ACV81806.1| recombinase A [Burkholderia cenocepacia]
          Length = 223

 Score =  348 bits (892), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 162/223 (72%), Positives = 195/223 (87%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 1   LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 61  SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 120

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKI VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 121 IRMKINVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 180

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G++
Sbjct: 181 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEK 223


>gi|11245067|gb|AAG33435.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  348 bits (892), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 160/230 (69%), Positives = 197/230 (85%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           A G GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   AFGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGV
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGV 230


>gi|323710218|gb|ADY03043.1| RecA [Escherichia coli]
          Length = 224

 Score =  347 bits (891), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 156/224 (69%), Positives = 198/224 (88%)

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTGEQALEI 
Sbjct: 1   SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEIC 60

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L
Sbjct: 61  DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLL 120

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++TRVKVVKN
Sbjct: 121 IFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKN 180

Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
           K+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+
Sbjct: 181 KIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSY 224


>gi|308808812|ref|XP_003081716.1| recombination protein (ISS) [Ostreococcus tauri]
 gi|116060182|emb|CAL56241.1| recombination protein (ISS) [Ostreococcus tauri]
          Length = 396

 Score =  347 bits (891), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 175/348 (50%), Positives = 243/348 (69%), Gaps = 5/348 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+  L +I   +G GAIM+LG  G     +    SG+L LD+ALG GG P+GRIVE
Sbjct: 37  KKKALQRVLDEIDSNFGAGAIMRLGEAGKA--KVATFPSGALTLDMALG-GGLPRGRIVE 93

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTLALH +A+ Q  GGT A +DAEHA D  Y+ +LG++L ++++ QP+TGE
Sbjct: 94  VYGPESSGKTTLALHAMAEMQAIGGTVAIIDAEHAFDPEYSARLGLNLDDVIVCQPETGE 153

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
            ALE+ D LVRS AVD+IV+DSVAAL PR+EIEG++G    G  ARLMSQALRK+  + +
Sbjct: 154 MALEVVDTLVRSSAVDLIVVDSVAALVPRSEIEGEIGMVQVGAHARLMSQALRKINVNAA 213

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--DSITGNQ 249
           ++   ++F+NQ+R K+GV++GSPE TTGGNALK+Y+SVRLDIRR   IK K  +   G +
Sbjct: 214 KAGTTIIFLNQLRSKVGVIYGSPEVTTGGNALKYYASVRLDIRRKEVIKGKSGEDDLGVR 273

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKV KNK+A P+K  EFD+++G GIS  G L+D G +  +VD+ GA++ + G++LGQG
Sbjct: 274 CKVKVAKNKVAPPYKVAEFDMLFGRGISKDGCLLDAGEQVGVVDRKGAYYYYNGEKLGQG 333

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           RE +  FL EN+ +   IE+ +R+        L  +P    +++   D
Sbjct: 334 REKTLAFLDENLPVKGTIEADVRRKVAEKMAGLSNKPVAEEEEEIPDD 381


>gi|146317724|ref|YP_001197436.1| RecA/RadA recombinase [Streptococcus suis 05ZYH33]
 gi|145688530|gb|ABP89036.1| RecA/RadA recombinase [Streptococcus suis 05ZYH33]
          Length = 321

 Score =  347 bits (891), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 166/286 (58%), Positives = 221/286 (77%), Gaps = 4/286 (1%)

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+S
Sbjct: 10  KGRIIEIYGPESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLS 69

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RK
Sbjct: 70  QPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRK 129

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----D 241
           L +SI+++K + +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+D+R    IK     
Sbjct: 130 LGASINKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVRGNTQIKGTGDK 189

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
           KD   G +T+VK+VKNK+A PFK+   +IMYGEGIS  GELI++G    I+ K+GAW+S+
Sbjct: 190 KDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSY 249

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
            G+++GQG EN+K FL +N  I + I+  +R + GL+    ++E A
Sbjct: 250 NGEKIGQGSENAKKFLADNPAIFDEIDRKIRVHYGLIEADGVEEVA 295


>gi|223470144|gb|ACM90399.1| recombinase A [Streptococcus salivarius]
 gi|223470146|gb|ACM90400.1| recombinase A [Streptococcus salivarius]
          Length = 269

 Score =  347 bits (891), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 164/261 (62%), Positives = 210/261 (80%), Gaps = 4/261 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 8   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQTQKEGGIAAFIDAE 67

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 68  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 127

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+G+MFG+PETT GG ALK
Sbjct: 128 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALK 187

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KD   G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 188 FYASVRLDVRGNTQIKGTGDKKDQNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTG 247

Query: 281 ELIDLGVKASIVDKSGAWFSF 301
           EL+ +     I+ K+GAWFS+
Sbjct: 248 ELVKIASDLGIIQKAGAWFSY 268


>gi|30266981|gb|AAP21599.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum]
          Length = 242

 Score =  347 bits (891), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 166/244 (68%), Positives = 202/244 (82%), Gaps = 2/244 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   S+   +E +S+GSL LDIA G GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRLGEDRSM--DVETISTGSLSLDIAFGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G +TRVKVV NKM + FKQ EF
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEELVGIETRVKVVNNKMVARFKQAEF 238

Query: 269 DIMY 272
            IMY
Sbjct: 239 QIMY 242


>gi|315021915|gb|ADT70825.1| recombinase A [Pectobacterium wasabiae]
          Length = 236

 Score =  347 bits (891), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 165/237 (69%), Positives = 201/237 (84%), Gaps = 2/237 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +
Sbjct: 1   IMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++
Sbjct: 59  QREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIV 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIGVMF
Sbjct: 119 DSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           G+PETTTGGNALKFY+SVRLDIRR G+IKD + + G++TRVKVVKNK+A+PFKQ EF
Sbjct: 179 GNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVGSETRVKVVKNKVAAPFKQAEF 235


>gi|312273252|gb|ADQ56981.1| recombinase A [Vibrio sp. PS0705-3A4]
 gi|312273254|gb|ADQ56982.1| recombinase A [Vibrio sp. K0706-35]
 gi|312273256|gb|ADQ56983.1| recombinase A [Vibrio sp. K0606-41]
          Length = 230

 Score =  347 bits (891), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 158/230 (68%), Positives = 199/230 (86%)

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQP
Sbjct: 1   RIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQP 60

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT
Sbjct: 61  DTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLT 120

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + G
Sbjct: 121 GNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVG 180

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           N+TR+KVVKNK+A+PFK+    IMYG+G +  GEL+DLGVK  +V+K+GA
Sbjct: 181 NETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKAGA 230


>gi|308377116|ref|ZP_07668435.1| putative protein RecA [Mycobacterium tuberculosis SUMu008]
 gi|308348909|gb|EFP37760.1| putative protein RecA [Mycobacterium tuberculosis SUMu008]
          Length = 714

 Score =  347 bits (891), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 167/263 (63%), Positives = 215/263 (81%), Gaps = 3/263 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI++ YGKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 6   DREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD  +  GN+T
Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYG 273
           RVKVVKNK  +   ++ FD + G
Sbjct: 244 RVKVVKNKCLAEGTRI-FDPVTG 265


>gi|254551792|ref|ZP_05142239.1| DNA recombination protein RecA [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
          Length = 613

 Score =  347 bits (891), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 167/263 (63%), Positives = 215/263 (81%), Gaps = 3/263 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI++ YGKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 6   DREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD  +  GN+T
Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYG 273
           RVKVVKNK  +   ++ FD + G
Sbjct: 244 RVKVVKNKCLAEGTRI-FDPVTG 265


>gi|294783050|ref|ZP_06748374.1| protein RecA [Fusobacterium sp. 1_1_41FAA]
 gi|294479928|gb|EFG27705.1| protein RecA [Fusobacterium sp. 1_1_41FAA]
          Length = 379

 Score =  347 bits (890), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 189/351 (53%), Positives = 257/351 (73%), Gaps = 4/351 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KA+  A++ I + +G G IM+LG + S+   +E + +GS+ LDIALGIGG PKGRI+E
Sbjct: 20  KQKAVNDAMAAITKGFGAGLIMKLGEKSSM--NVESIPTGSINLDIALGIGGVPKGRIIE 77

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YG ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGVD+  LLISQPD GE
Sbjct: 78  VYGAESSGKTTLALHIIAEAQKQGGTVAFIDAEHALDPVYAKALGVDIDELLISQPDYGE 137

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M +   G+QARLMS+ LRKLT +++
Sbjct: 138 QALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQMGLQARLMSKGLRKLTGNLN 197

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           + K  ++FINQ+R KIGV +G   TTTGG ALKFY+SVRL+++++G++K  D   G++  
Sbjct: 198 KYKTTMIFINQIREKIGVTYGPTTTTTGGKALKFYASVRLEVKKMGTVKQGDDPIGSEVV 257

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV KNK+A PFK+  F+I+YG+GIS  GE+ID  V   ++ K+G+WFSF+ Q +GQG+E
Sbjct: 258 VKVTKNKVAPPFKEAAFEILYGKGISRVGEIIDAAVARDVIVKAGSWFSFREQSIGQGKE 317

Query: 312 NSKIFLRENIEIAENIESLLRQ--NAGLVADSLLQEPAINTKDDADKDDTD 360
             +I L  N E+   +E+ L++  + G V     +       DD D DD +
Sbjct: 318 KVRIELESNPELLAQVEADLKEAISKGPVDKKKKKSKKELASDDVDTDDAE 368


>gi|312273016|gb|ADQ56863.1| recombinase A [Vibrio cholerae]
 gi|312273038|gb|ADQ56874.1| recombinase A [Vibrio cholerae]
 gi|312273156|gb|ADQ56933.1| recombinase A [Vibrio cholerae]
 gi|312273162|gb|ADQ56936.1| recombinase A [Vibrio cholerae]
          Length = 230

 Score =  347 bits (890), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 161/230 (70%), Positives = 199/230 (86%)

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGV++  LL+SQP
Sbjct: 1   RIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPIYAKKLGVNIDELLVSQP 60

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT
Sbjct: 61  DTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLT 120

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G
Sbjct: 121 GNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVG 180

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           N+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGA
Sbjct: 181 NETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGA 230


>gi|30266985|gb|AAP21601.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum]
          Length = 244

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 168/245 (68%), Positives = 203/245 (82%), Gaps = 2/245 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 2   KGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 60  ASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 120 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDI   G IK+ + + G +TRVKVVKNKMA+ FKQ EF
Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIPPTGPIKEGEELVGFETRVKVVKNKMAARFKQAEF 239

Query: 269 DIMYG 273
            IMYG
Sbjct: 240 QIMYG 244


>gi|87122502|ref|ZP_01078382.1| recombinase A [Marinomonas sp. MED121]
 gi|86162295|gb|EAQ63580.1| recombinase A [Marinomonas sp. MED121]
          Length = 273

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 175/276 (63%), Positives = 217/276 (78%), Gaps = 7/276 (2%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           +  IA++QK G TCAF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEI DMLVRS 
Sbjct: 1   MSVIAEAQKQGKTCAFIDAEHALDPSYAEKLGVNIADLLISQPDTGEQALEIVDMLVRSN 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           +VD++++DSVAAL P++EIEG+MG S  G+QARL+SQA+RKLT SI  + C++VFINQ+R
Sbjct: 61  SVDVVIVDSVAALVPKSEIEGEMGSSSVGVQARLLSQAMRKLTGSIKNANCLVVFINQIR 120

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GS+K  D + GN+TRVKVVKNK+A PFK
Sbjct: 121 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKQGDEVVGNETRVKVVKNKIAPPFK 180

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           Q EF IMYG GI   GE+IDLGVK   VDKSGAW+++ G ++GQG+ N+  FL +N EIA
Sbjct: 181 QTEFQIMYGAGIYRMGEIIDLGVKQGFVDKSGAWYAYNGSKIGQGKANAAQFLSDNPEIA 240

Query: 325 ENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
             IE  +R+        LL +     KDDA +++ D
Sbjct: 241 TEIEGKIREQ-------LLPKDLPAEKDDAKEEEGD 269


>gi|11244963|gb|AAG33383.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 160/230 (69%), Positives = 197/230 (85%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  I  +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIXAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGV
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGV 230


>gi|223470140|gb|ACM90397.1| recombinase A [Streptococcus salivarius]
          Length = 271

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 164/261 (62%), Positives = 210/261 (80%), Gaps = 4/261 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 10  VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQTQKEGGIAAFIDAE 69

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 70  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 129

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+G+MFG+PETT GG ALK
Sbjct: 130 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALK 189

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KD   G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 190 FYASVRLDVRGNTQIKGTGDKKDQNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTG 249

Query: 281 ELIDLGVKASIVDKSGAWFSF 301
           EL+ +     I+ K+GAWFS+
Sbjct: 250 ELVKIASDLGIIQKAGAWFSY 270


>gi|11245159|gb|AAG33481.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 160/230 (69%), Positives = 197/230 (85%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPES GKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESXGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGV
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGV 230


>gi|157493211|gb|ABV57971.1| RecA [Vibrio mimicus]
          Length = 226

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 159/226 (70%), Positives = 196/226 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+M
Sbjct: 61  DPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG
Sbjct: 181 SVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYG 226


>gi|223470142|gb|ACM90398.1| recombinase A [Streptococcus salivarius]
 gi|223470150|gb|ACM90402.1| recombinase A [Streptococcus salivarius]
          Length = 266

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 164/261 (62%), Positives = 210/261 (80%), Gaps = 4/261 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 5   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQTQKEGGIAAFIDAE 64

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 65  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 124

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+G+MFG+PETT GG ALK
Sbjct: 125 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALK 184

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KD   G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 185 FYASVRLDVRGNTQIKGTGDKKDQNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTG 244

Query: 281 ELIDLGVKASIVDKSGAWFSF 301
           EL+ +     I+ K+GAWFS+
Sbjct: 245 ELVKIASDLGIIQKAGAWFSY 265


>gi|2598000|emb|CAA03857.1| RecA protein [Mycobacterium tuberculosis]
 gi|2598002|emb|CAA03856.1| RecA protein [Mycobacterium tuberculosis]
          Length = 790

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 167/263 (63%), Positives = 215/263 (81%), Gaps = 3/263 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI++ YGKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 6   DREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD  +  GN+T
Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYG 273
           RVKVVKNK  +   ++ FD + G
Sbjct: 244 RVKVVKNKCLAEGTRI-FDPVTG 265



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 65/86 (75%)

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VV +  + PFKQ EFDI+YG+GIS  G LID+GV   ++ KSGAWF+++G++LGQG+EN+
Sbjct: 687 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENA 746

Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339
           + FL EN ++A+ IE  +++  G+ A
Sbjct: 747 RNFLVENADVADEIEKKIKEKLGIGA 772


>gi|169742994|gb|ACA66120.1| recombinase A [Geobacillus thermodenitrificans]
          Length = 241

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 166/243 (68%), Positives = 202/243 (83%), Gaps = 2/243 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG Q      I  V SGSL LDIALG+GG+P+GRI+EIYGPESSGKTT+ALH IA+ Q
Sbjct: 1   MKLGEQAE--RQISTVPSGSLALDIALGVGGYPRGRIIEIYGPESSGKTTVALHAIAEVQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG  AF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI + LVRSGAVDIIVID
Sbjct: 59  KQGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEG+MG++  G+QARLMSQALRKL+ +I++SK I +FINQ+R K+GVMFG
Sbjct: 119 SVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETT GG ALKFY+SVRL++RR   IK  + + GN+T++KVVKNK+A PFK  + DIMY
Sbjct: 179 NPETTPGGRALKFYASVRLEVRRAEQIKQGNDMVGNKTKIKVVKNKVAPPFKTADVDIMY 238

Query: 273 GEG 275
           GEG
Sbjct: 239 GEG 241


>gi|260201861|ref|ZP_05769352.1| DNA recombination protein RecA [Mycobacterium tuberculosis T46]
 gi|289444279|ref|ZP_06434023.1| recombination protein recA [Mycobacterium tuberculosis T46]
 gi|289417198|gb|EFD14438.1| recombination protein recA [Mycobacterium tuberculosis T46]
          Length = 790

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 167/263 (63%), Positives = 215/263 (81%), Gaps = 3/263 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI++ YGKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 6   DREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD  +  GN+T
Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYG 273
           RVKVVKNK  +   ++ FD + G
Sbjct: 244 RVKVVKNKCLAEGTRI-FDPVTG 265



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 65/86 (75%)

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VV +  + PFKQ EFDI+YG+GIS  G LID+GV   ++ KSGAWF+++G++LGQG+EN+
Sbjct: 687 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENA 746

Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339
           + FL EN ++A+ IE  +++  G+ A
Sbjct: 747 RNFLVENADVADEIEKKIKEKLGIGA 772


>gi|11245179|gb|AAG33491.1| RecA protein [Vibrio cholerae]
          Length = 231

 Score =  347 bits (889), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 160/230 (69%), Positives = 198/230 (86%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           A+G GG P GRIVEI+GP SSGKTTL L  IA +Q+ G TCAF+DAEHALDS+YA+KLGV
Sbjct: 1   AIGAGGLPMGRIVEIFGPVSSGKTTLTLELIAAAQREGKTCAFIDAEHALDSVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGV
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGV 230


>gi|15609874|ref|NP_217253.1| DNA recombination protein RecA [Mycobacterium tuberculosis H37Rv]
 gi|15842276|ref|NP_337313.1| DNA recombination protein RecA [Mycobacterium tuberculosis CDC1551]
 gi|31793909|ref|NP_856402.1| DNA recombination protein RecA [Mycobacterium bovis AF2122/97]
 gi|121638612|ref|YP_978836.1| DNA recombination protein RecA [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148662578|ref|YP_001284101.1| DNA recombination protein RecA [Mycobacterium tuberculosis H37Ra]
 gi|148823925|ref|YP_001288679.1| recombinase A [Mycobacterium tuberculosis F11]
 gi|215404700|ref|ZP_03416881.1| recombinase A [Mycobacterium tuberculosis 02_1987]
 gi|215412541|ref|ZP_03421275.1| recombinase A [Mycobacterium tuberculosis 94_M4241A]
 gi|218754471|ref|ZP_03533267.1| recombinase A [Mycobacterium tuberculosis GM 1503]
 gi|224991104|ref|YP_002645793.1| recombinase A [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253798182|ref|YP_003031183.1| recombination protein recA [Mycobacterium tuberculosis KZN 1435]
 gi|254365391|ref|ZP_04981436.1| recA protein (recombinase A) [Mycobacterium tuberculosis str.
           Haarlem]
 gi|289553479|ref|ZP_06442689.1| recombination protein recA [Mycobacterium tuberculosis KZN 605]
 gi|289746539|ref|ZP_06505917.1| recombinase A [Mycobacterium tuberculosis 02_1987]
 gi|289762908|ref|ZP_06522286.1| recA protein (recombinase A) [Mycobacterium tuberculosis GM 1503]
 gi|294994174|ref|ZP_06799865.1| DNA recombination protein RecA [Mycobacterium tuberculosis 210]
 gi|297635343|ref|ZP_06953123.1| DNA recombination protein RecA [Mycobacterium tuberculosis KZN
           4207]
 gi|297732339|ref|ZP_06961457.1| DNA recombination protein RecA [Mycobacterium tuberculosis KZN
           R506]
 gi|298526206|ref|ZP_07013615.1| recA protein, intein-containing [Mycobacterium tuberculosis
           94_M4241A]
 gi|306777014|ref|ZP_07415351.1| recombination protein recA [Mycobacterium tuberculosis SUMu001]
 gi|306780917|ref|ZP_07419254.1| recombination protein recA [Mycobacterium tuberculosis SUMu002]
 gi|306785543|ref|ZP_07423865.1| recombination protein recA [Mycobacterium tuberculosis SUMu003]
 gi|306790139|ref|ZP_07428461.1| recombination protein recA [Mycobacterium tuberculosis SUMu004]
 gi|306794222|ref|ZP_07432524.1| recombination protein recA [Mycobacterium tuberculosis SUMu005]
 gi|306798640|ref|ZP_07436942.1| recombination protein recA [Mycobacterium tuberculosis SUMu006]
 gi|306807464|ref|ZP_07444132.1| recombination protein recA [Mycobacterium tuberculosis SUMu007]
 gi|306968795|ref|ZP_07481456.1| recombination protein recA [Mycobacterium tuberculosis SUMu009]
 gi|306973129|ref|ZP_07485790.1| recombination protein recA [Mycobacterium tuberculosis SUMu010]
 gi|307080838|ref|ZP_07490008.1| recombination protein recA [Mycobacterium tuberculosis SUMu011]
 gi|307085430|ref|ZP_07494543.1| recombination protein recA [Mycobacterium tuberculosis SUMu012]
 gi|313659672|ref|ZP_07816552.1| DNA recombination protein RecA [Mycobacterium tuberculosis KZN
           V2475]
 gi|61230236|sp|P0A5U4|RECA_MYCTU RecName: Full=Protein RecA; AltName: Full=Recombinase A; Contains:
           RecName: Full=Endonuclease PI-MtuI; AltName: Full=Mtu
           RecA intein
 gi|61230237|sp|P0A5U5|RECA_MYCBO RecName: Full=Protein RecA; AltName: Full=Recombinase A; Contains:
           RecName: Full=Endonuclease PI-MboI; AltName: Full=Mbo
           RecA intein
 gi|44662|emb|CAA41395.1| RecA [Mycobacterium tuberculosis H37Rv]
 gi|2624258|emb|CAA15533.1| RECA PROTEIN (RECOMBINASE A) [CONTAINS: ENDONUCLEASE PI-MTUI (MTU
           RECA INTEIN)] [Mycobacterium tuberculosis H37Rv]
 gi|13882569|gb|AAK47127.1| recA protein, intein-containing [Mycobacterium tuberculosis
           CDC1551]
 gi|31619503|emb|CAD94941.1| RECA PROTEIN (RECOMBINASE A) [CONTAINS: ENDONUCLEASE PI-MTUI (MTU
           RECA INTEIN)] [Mycobacterium bovis AF2122/97]
 gi|121494260|emb|CAL72738.1| RecA protein [contains: endonuclease pi-mtui [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|134150904|gb|EBA42949.1| recA protein (recombinase A) [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506730|gb|ABQ74539.1| RecA protein [Mycobacterium tuberculosis H37Ra]
 gi|148722452|gb|ABR07077.1| recombinase A recA [Mycobacterium tuberculosis F11]
 gi|224774219|dbj|BAH27025.1| recombinase A [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253319685|gb|ACT24288.1| recombination protein recA [Mycobacterium tuberculosis KZN 1435]
 gi|289438111|gb|EFD20604.1| recombination protein recA [Mycobacterium tuberculosis KZN 605]
 gi|289687067|gb|EFD54555.1| recombinase A [Mycobacterium tuberculosis 02_1987]
 gi|289710414|gb|EFD74430.1| recA protein (recombinase A) [Mycobacterium tuberculosis GM 1503]
 gi|298496000|gb|EFI31294.1| recA protein, intein-containing [Mycobacterium tuberculosis
           94_M4241A]
 gi|308214671|gb|EFO74070.1| recombination protein recA [Mycobacterium tuberculosis SUMu001]
 gi|308326315|gb|EFP15166.1| recombination protein recA [Mycobacterium tuberculosis SUMu002]
 gi|308329796|gb|EFP18647.1| recombination protein recA [Mycobacterium tuberculosis SUMu003]
 gi|308333416|gb|EFP22267.1| recombination protein recA [Mycobacterium tuberculosis SUMu004]
 gi|308337482|gb|EFP26333.1| recombination protein recA [Mycobacterium tuberculosis SUMu005]
 gi|308341154|gb|EFP30005.1| recombination protein recA [Mycobacterium tuberculosis SUMu006]
 gi|308346059|gb|EFP34910.1| recombination protein recA [Mycobacterium tuberculosis SUMu007]
 gi|308353681|gb|EFP42532.1| recombination protein recA [Mycobacterium tuberculosis SUMu009]
 gi|308357528|gb|EFP46379.1| recombination protein recA [Mycobacterium tuberculosis SUMu010]
 gi|308361425|gb|EFP50276.1| recombination protein recA [Mycobacterium tuberculosis SUMu011]
 gi|308365077|gb|EFP53928.1| recombination protein recA [Mycobacterium tuberculosis SUMu012]
 gi|323718665|gb|EGB27828.1| recombination protein recA [Mycobacterium tuberculosis CDC1551A]
 gi|326904352|gb|EGE51285.1| recombination protein recA [Mycobacterium tuberculosis W-148]
 gi|328457955|gb|AEB03378.1| recombination protein recA [Mycobacterium tuberculosis KZN 4207]
          Length = 790

 Score =  347 bits (889), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 167/263 (63%), Positives = 215/263 (81%), Gaps = 3/263 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI++ YGKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 6   DREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD  +  GN+T
Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYG 273
           RVKVVKNK  +   ++ FD + G
Sbjct: 244 RVKVVKNKCLAEGTRI-FDPVTG 265



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 65/86 (75%)

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VV +  + PFKQ EFDI+YG+GIS  G LID+GV   ++ KSGAWF+++G++LGQG+EN+
Sbjct: 687 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENA 746

Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339
           + FL EN ++A+ IE  +++  G+ A
Sbjct: 747 RNFLVENADVADEIEKKIKEKLGIGA 772


>gi|11244995|gb|AAG33399.1| RecA protein [Vibrio mimicus]
          Length = 234

 Score =  347 bits (889), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 160/230 (69%), Positives = 197/230 (85%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GP SSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPXSSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGV
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGV 230


>gi|260206044|ref|ZP_05773535.1| DNA recombination protein RecA [Mycobacterium tuberculosis K85]
 gi|289575434|ref|ZP_06455661.1| recombination protein recA [Mycobacterium tuberculosis K85]
 gi|289539865|gb|EFD44443.1| recombination protein recA [Mycobacterium tuberculosis K85]
          Length = 790

 Score =  347 bits (889), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 167/263 (63%), Positives = 215/263 (81%), Gaps = 3/263 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI++ YGKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 6   DREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD  +  GN+T
Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYG 273
           RVKVVKNK  +   ++ FD + G
Sbjct: 244 RVKVVKNKCLAEGTRI-FDPVTG 265



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 65/86 (75%)

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VV +  + PFKQ EFDI+YG+GIS  G LID+GV   ++ KSGAWF+++G++LGQG+EN+
Sbjct: 687 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENA 746

Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339
           + FL EN ++A+ IE  +++  G+ A
Sbjct: 747 RNFLVENADVADEIEKKIKEKLGIGA 772


>gi|254232836|ref|ZP_04926163.1| recA protein (recombinase A) [Mycobacterium tuberculosis C]
 gi|124601895|gb|EAY60905.1| recA protein (recombinase A) [Mycobacterium tuberculosis C]
          Length = 790

 Score =  347 bits (889), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 167/263 (63%), Positives = 215/263 (81%), Gaps = 3/263 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI++ YGKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 6   DREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD  +  GN+T
Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYG 273
           RVKVVKNK  +   ++ FD + G
Sbjct: 244 RVKVVKNKCLAEGTRI-FDPVTG 265



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 65/86 (75%)

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VV +  + PFKQ EFDI+YG+GIS  G LID+GV   ++ KSGAWF+++G++LGQG+EN+
Sbjct: 687 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENA 746

Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339
           + FL EN ++A+ IE  +++  G+ A
Sbjct: 747 RNFLVENADVADEIEKKIKEKLGIGA 772


>gi|215431673|ref|ZP_03429592.1| recombinase A [Mycobacterium tuberculosis EAS054]
 gi|289754840|ref|ZP_06514218.1| recombinase A [Mycobacterium tuberculosis EAS054]
 gi|289695427|gb|EFD62856.1| recombinase A [Mycobacterium tuberculosis EAS054]
          Length = 790

 Score =  347 bits (889), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 167/263 (63%), Positives = 215/263 (81%), Gaps = 3/263 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI++ YGKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 6   DREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQDAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD  +  GN+T
Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYG 273
           RVKVVKNK  +   ++ FD + G
Sbjct: 244 RVKVVKNKCLAEGTRI-FDPVTG 265



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 65/86 (75%)

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VV +  + PFKQ EFDI+YG+GIS  G LID+GV   ++ KSGAWF+++G++LGQG+EN+
Sbjct: 687 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENA 746

Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339
           + FL EN ++A+ IE  +++  G+ A
Sbjct: 747 RNFLVENADVADEIEKKIKEKLGIGA 772


>gi|260187752|ref|ZP_05765226.1| DNA recombination protein RecA [Mycobacterium tuberculosis CPHL_A]
 gi|289448392|ref|ZP_06438136.1| recombination protein recA [Mycobacterium tuberculosis CPHL_A]
 gi|289421350|gb|EFD18551.1| recombination protein recA [Mycobacterium tuberculosis CPHL_A]
          Length = 790

 Score =  347 bits (889), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 167/263 (63%), Positives = 215/263 (81%), Gaps = 3/263 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI++ YGKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 6   DREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD  +  GN+T
Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYG 273
           RVKVVKNK  +   ++ FD + G
Sbjct: 244 RVKVVKNKCLAEGTRI-FDPVTG 265



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 65/86 (75%)

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VV +  + PFKQ EFDI+YG+GIS  G LID+GV   ++ KSGAWF+++G++LGQG+EN+
Sbjct: 687 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENA 746

Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339
           + FL EN ++A+ IE  +++  G+ A
Sbjct: 747 RNFLVENADVADEIEKKIKEKLGIGA 772


>gi|312272922|gb|ADQ56816.1| recombinase A [Vibrio sp. HB0308-1A6]
 gi|312272924|gb|ADQ56817.1| recombinase A [Vibrio sp. HB0308-2A5]
 gi|312272926|gb|ADQ56818.1| recombinase A [Vibrio sp. HB0308-1A5]
 gi|312272928|gb|ADQ56819.1| recombinase A [Vibrio cholerae]
 gi|312272930|gb|ADQ56820.1| recombinase A [Vibrio cholerae]
 gi|312272932|gb|ADQ56821.1| recombinase A [Vibrio sp. HB0308-1B5]
 gi|312272934|gb|ADQ56822.1| recombinase A [Vibrio cholerae]
 gi|312272936|gb|ADQ56823.1| recombinase A [Vibrio cholerae]
 gi|312272938|gb|ADQ56824.1| recombinase A [Vibrio cholerae O395]
 gi|312272940|gb|ADQ56825.1| recombinase A [Vibrio cholerae]
 gi|312272942|gb|ADQ56826.1| recombinase A [Vibrio cholerae]
 gi|312272944|gb|ADQ56827.1| recombinase A [Vibrio cholerae]
 gi|312272946|gb|ADQ56828.1| recombinase A [Vibrio cholerae]
 gi|312272948|gb|ADQ56829.1| recombinase A [Vibrio cholerae]
 gi|312272950|gb|ADQ56830.1| recombinase A [Vibrio cholerae]
 gi|312272952|gb|ADQ56831.1| recombinase A [Vibrio cholerae]
 gi|312272954|gb|ADQ56832.1| recombinase A [Vibrio cholerae]
 gi|312272956|gb|ADQ56833.1| recombinase A [Vibrio cholerae]
 gi|312272958|gb|ADQ56834.1| recombinase A [Vibrio cholerae]
 gi|312272960|gb|ADQ56835.1| recombinase A [Vibrio cholerae]
 gi|312272962|gb|ADQ56836.1| recombinase A [Vibrio cholerae]
 gi|312272964|gb|ADQ56837.1| recombinase A [Vibrio cholerae]
 gi|312272966|gb|ADQ56838.1| recombinase A [Vibrio cholerae]
 gi|312272968|gb|ADQ56839.1| recombinase A [Vibrio cholerae]
 gi|312272970|gb|ADQ56840.1| recombinase A [Vibrio cholerae]
 gi|312272972|gb|ADQ56841.1| recombinase A [Vibrio cholerae]
 gi|312272974|gb|ADQ56842.1| recombinase A [Vibrio cholerae]
 gi|312272976|gb|ADQ56843.1| recombinase A [Vibrio cholerae]
 gi|312272978|gb|ADQ56844.1| recombinase A [Vibrio cholerae]
 gi|312272980|gb|ADQ56845.1| recombinase A [Vibrio cholerae]
 gi|312272982|gb|ADQ56846.1| recombinase A [Vibrio cholerae]
 gi|312272984|gb|ADQ56847.1| recombinase A [Vibrio cholerae]
 gi|312272986|gb|ADQ56848.1| recombinase A [Vibrio cholerae]
 gi|312272988|gb|ADQ56849.1| recombinase A [Vibrio cholerae]
 gi|312272990|gb|ADQ56850.1| recombinase A [Vibrio sp. L8M]
 gi|312272992|gb|ADQ56851.1| recombinase A [Vibrio cholerae]
 gi|312272994|gb|ADQ56852.1| recombinase A [Vibrio cholerae]
 gi|312272996|gb|ADQ56853.1| recombinase A [Vibrio cholerae]
 gi|312272998|gb|ADQ56854.1| recombinase A [Vibrio cholerae]
 gi|312273000|gb|ADQ56855.1| recombinase A [Vibrio cholerae]
 gi|312273002|gb|ADQ56856.1| recombinase A [Vibrio cholerae]
 gi|312273004|gb|ADQ56857.1| recombinase A [Vibrio cholerae]
 gi|312273006|gb|ADQ56858.1| recombinase A [Vibrio cholerae]
 gi|312273008|gb|ADQ56859.1| recombinase A [Vibrio cholerae]
 gi|312273010|gb|ADQ56860.1| recombinase A [Vibrio cholerae]
 gi|312273012|gb|ADQ56861.1| recombinase A [Vibrio cholerae]
 gi|312273014|gb|ADQ56862.1| recombinase A [Vibrio cholerae]
 gi|312273018|gb|ADQ56864.1| recombinase A [Vibrio cholerae]
 gi|312273020|gb|ADQ56865.1| recombinase A [Vibrio cholerae]
 gi|312273022|gb|ADQ56866.1| recombinase A [Vibrio cholerae]
 gi|312273024|gb|ADQ56867.1| recombinase A [Vibrio cholerae]
 gi|312273026|gb|ADQ56868.1| recombinase A [Vibrio cholerae]
 gi|312273028|gb|ADQ56869.1| recombinase A [Vibrio cholerae]
 gi|312273030|gb|ADQ56870.1| recombinase A [Vibrio cholerae]
 gi|312273032|gb|ADQ56871.1| recombinase A [Vibrio cholerae]
 gi|312273034|gb|ADQ56872.1| recombinase A [Vibrio cholerae]
 gi|312273036|gb|ADQ56873.1| recombinase A [Vibrio cholerae]
 gi|312273040|gb|ADQ56875.1| recombinase A [Vibrio cholerae]
 gi|312273042|gb|ADQ56876.1| recombinase A [Vibrio cholerae]
 gi|312273044|gb|ADQ56877.1| recombinase A [Vibrio cholerae]
 gi|312273046|gb|ADQ56878.1| recombinase A [Vibrio cholerae]
 gi|312273048|gb|ADQ56879.1| recombinase A [Vibrio cholerae]
 gi|312273050|gb|ADQ56880.1| recombinase A [Vibrio cholerae]
 gi|312273052|gb|ADQ56881.1| recombinase A [Vibrio cholerae]
 gi|312273054|gb|ADQ56882.1| recombinase A [Vibrio cholerae]
 gi|312273056|gb|ADQ56883.1| recombinase A [Vibrio cholerae]
 gi|312273058|gb|ADQ56884.1| recombinase A [Vibrio cholerae]
 gi|312273060|gb|ADQ56885.1| recombinase A [Vibrio cholerae]
 gi|312273062|gb|ADQ56886.1| recombinase A [Vibrio cholerae]
 gi|312273064|gb|ADQ56887.1| recombinase A [Vibrio cholerae]
 gi|312273066|gb|ADQ56888.1| recombinase A [Vibrio cholerae]
 gi|312273068|gb|ADQ56889.1| recombinase A [Vibrio cholerae]
 gi|312273070|gb|ADQ56890.1| recombinase A [Vibrio cholerae]
 gi|312273072|gb|ADQ56891.1| recombinase A [Vibrio cholerae]
 gi|312273074|gb|ADQ56892.1| recombinase A [Vibrio cholerae]
 gi|312273076|gb|ADQ56893.1| recombinase A [Vibrio cholerae]
 gi|312273078|gb|ADQ56894.1| recombinase A [Vibrio cholerae]
 gi|312273080|gb|ADQ56895.1| recombinase A [Vibrio cholerae]
 gi|312273082|gb|ADQ56896.1| recombinase A [Vibrio cholerae]
 gi|312273088|gb|ADQ56899.1| recombinase A [Vibrio cholerae]
 gi|312273092|gb|ADQ56901.1| recombinase A [Vibrio cholerae]
 gi|312273094|gb|ADQ56902.1| recombinase A [Vibrio cholerae]
 gi|312273096|gb|ADQ56903.1| recombinase A [Vibrio cholerae]
 gi|312273098|gb|ADQ56904.1| recombinase A [Vibrio cholerae]
 gi|312273100|gb|ADQ56905.1| recombinase A [Vibrio cholerae]
 gi|312273102|gb|ADQ56906.1| recombinase A [Vibrio cholerae]
 gi|312273104|gb|ADQ56907.1| recombinase A [Vibrio cholerae]
 gi|312273106|gb|ADQ56908.1| recombinase A [Vibrio cholerae]
 gi|312273108|gb|ADQ56909.1| recombinase A [Vibrio cholerae]
 gi|312273110|gb|ADQ56910.1| recombinase A [Vibrio cholerae]
 gi|312273112|gb|ADQ56911.1| recombinase A [Vibrio cholerae]
 gi|312273114|gb|ADQ56912.1| recombinase A [Vibrio cholerae]
 gi|312273116|gb|ADQ56913.1| recombinase A [Vibrio cholerae]
 gi|312273118|gb|ADQ56914.1| recombinase A [Vibrio cholerae]
 gi|312273120|gb|ADQ56915.1| recombinase A [Vibrio cholerae]
 gi|312273122|gb|ADQ56916.1| recombinase A [Vibrio cholerae]
 gi|312273124|gb|ADQ56917.1| recombinase A [Vibrio cholerae]
 gi|312273126|gb|ADQ56918.1| recombinase A [Vibrio cholerae]
 gi|312273128|gb|ADQ56919.1| recombinase A [Vibrio cholerae]
 gi|312273130|gb|ADQ56920.1| recombinase A [Vibrio cholerae]
 gi|312273132|gb|ADQ56921.1| recombinase A [Vibrio cholerae]
 gi|312273134|gb|ADQ56922.1| recombinase A [Vibrio cholerae]
 gi|312273136|gb|ADQ56923.1| recombinase A [Vibrio cholerae]
 gi|312273138|gb|ADQ56924.1| recombinase A [Vibrio cholerae]
 gi|312273140|gb|ADQ56925.1| recombinase A [Vibrio cholerae]
 gi|312273142|gb|ADQ56926.1| recombinase A [Vibrio cholerae]
 gi|312273144|gb|ADQ56927.1| recombinase A [Vibrio cholerae]
 gi|312273146|gb|ADQ56928.1| recombinase A [Vibrio cholerae]
 gi|312273148|gb|ADQ56929.1| recombinase A [Vibrio cholerae]
 gi|312273150|gb|ADQ56930.1| recombinase A [Vibrio cholerae]
 gi|312273152|gb|ADQ56931.1| recombinase A [Vibrio cholerae]
 gi|312273154|gb|ADQ56932.1| recombinase A [Vibrio cholerae]
 gi|312273158|gb|ADQ56934.1| recombinase A [Vibrio cholerae]
 gi|312273160|gb|ADQ56935.1| recombinase A [Vibrio cholerae]
 gi|312273164|gb|ADQ56937.1| recombinase A [Vibrio cholerae]
 gi|312273166|gb|ADQ56938.1| recombinase A [Vibrio cholerae]
 gi|312273168|gb|ADQ56939.1| recombinase A [Vibrio cholerae]
 gi|312273170|gb|ADQ56940.1| recombinase A [Vibrio cholerae]
 gi|312273172|gb|ADQ56941.1| recombinase A [Vibrio cholerae]
 gi|312273174|gb|ADQ56942.1| recombinase A [Vibrio cholerae]
 gi|312273176|gb|ADQ56943.1| recombinase A [Vibrio cholerae]
 gi|312273178|gb|ADQ56944.1| recombinase A [Vibrio cholerae]
 gi|312273180|gb|ADQ56945.1| recombinase A [Vibrio cholerae]
 gi|312273182|gb|ADQ56946.1| recombinase A [Vibrio cholerae]
 gi|312273184|gb|ADQ56947.1| recombinase A [Vibrio cholerae]
 gi|312273186|gb|ADQ56948.1| recombinase A [Vibrio cholerae]
 gi|312273188|gb|ADQ56949.1| recombinase A [Vibrio cholerae]
 gi|312273190|gb|ADQ56950.1| recombinase A [Vibrio cholerae]
 gi|312273192|gb|ADQ56951.1| recombinase A [Vibrio cholerae]
 gi|312273194|gb|ADQ56952.1| recombinase A [Vibrio cholerae]
 gi|312273196|gb|ADQ56953.1| recombinase A [Vibrio cholerae]
 gi|312273198|gb|ADQ56954.1| recombinase A [Vibrio cholerae]
 gi|312273200|gb|ADQ56955.1| recombinase A [Vibrio cholerae]
 gi|312273202|gb|ADQ56956.1| recombinase A [Vibrio cholerae]
 gi|312273204|gb|ADQ56957.1| recombinase A [Vibrio cholerae]
 gi|312273206|gb|ADQ56958.1| recombinase A [Vibrio cholerae]
 gi|312273208|gb|ADQ56959.1| recombinase A [Vibrio cholerae]
 gi|312273210|gb|ADQ56960.1| recombinase A [Vibrio cholerae]
 gi|312273212|gb|ADQ56961.1| recombinase A [Vibrio cholerae]
 gi|312273214|gb|ADQ56962.1| recombinase A [Vibrio cholerae]
 gi|312273216|gb|ADQ56963.1| recombinase A [Vibrio cholerae]
 gi|312273218|gb|ADQ56964.1| recombinase A [Vibrio cholerae]
 gi|312273220|gb|ADQ56965.1| recombinase A [Vibrio cholerae]
 gi|312273222|gb|ADQ56966.1| recombinase A [Vibrio cholerae]
 gi|312273224|gb|ADQ56967.1| recombinase A [Vibrio cholerae]
 gi|312273226|gb|ADQ56968.1| recombinase A [Vibrio cholerae]
 gi|312273228|gb|ADQ56969.1| recombinase A [Vibrio cholerae]
 gi|312273230|gb|ADQ56970.1| recombinase A [Vibrio cholerae]
 gi|312273232|gb|ADQ56971.1| recombinase A [Vibrio cholerae]
 gi|312273234|gb|ADQ56972.1| recombinase A [Vibrio cholerae]
 gi|312273236|gb|ADQ56973.1| recombinase A [Vibrio cholerae]
 gi|312273238|gb|ADQ56974.1| recombinase A [Vibrio cholerae]
 gi|312273240|gb|ADQ56975.1| recombinase A [Vibrio cholerae]
 gi|312273242|gb|ADQ56976.1| recombinase A [Vibrio cholerae]
          Length = 230

 Score =  347 bits (889), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 160/230 (69%), Positives = 199/230 (86%)

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQP
Sbjct: 1   RIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQP 60

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT
Sbjct: 61  DTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLT 120

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G
Sbjct: 121 GNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVG 180

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           N+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGA
Sbjct: 181 NETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGA 230


>gi|258562177|gb|ACV81809.1| recombinase A [Burkholderia cenocepacia]
          Length = 223

 Score =  347 bits (889), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 162/223 (72%), Positives = 195/223 (87%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  I + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 1   LTLQVIDELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 61  SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 120

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 121 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 180

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G++
Sbjct: 181 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEK 223


>gi|6694817|gb|AAF25402.1|AF214755_1 RecA protein [Arthrobacter sp. 'SMCC ZAT012']
          Length = 246

 Score =  347 bits (889), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 163/246 (66%), Positives = 204/246 (82%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHA
Sbjct: 1   VIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YA KLGVD   LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEIEGD
Sbjct: 61  LDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIEGD 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+S  G+QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY
Sbjct: 121 MGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFY 180

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
           +S+R+D+RR+ ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS  G +ID+G
Sbjct: 181 ASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQGISREGGIIDMG 240

Query: 287 VKASIV 292
           V+  ++
Sbjct: 241 VEHGLI 246


>gi|304334133|gb|ADM25144.1| recombinase A [Cupriavidus sp. pp2.3]
 gi|304334193|gb|ADM25174.1| recombinase A [Cupriavidus sp. pp2.43]
 gi|304334199|gb|ADM25177.1| recombinase A [Cupriavidus sp. mpp2.10]
 gi|304334211|gb|ADM25183.1| recombinase A [Cupriavidus sp. mpp1.13]
          Length = 233

 Score =  346 bits (888), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 172/233 (73%), Positives = 208/233 (89%), Gaps = 1/233 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG  G + + I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ Q
Sbjct: 1   MRLG-DGEVEKDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGTCAF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVRSG++D+IVID
Sbjct: 60  KLGGTCAFIDAEHALDVNYASKLGVNVGDLLISQPDTGEQALEITDALVRSGSIDLIVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG
Sbjct: 120 SVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFG 179

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           SPETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T+VKVVKNK++ PF++
Sbjct: 180 SPETTTGGNALKFYASVRLDIRRIGSIKKGDDVIGNETKVKVVKNKVSPPFRE 232


>gi|315021927|gb|ADT70831.1| recombinase A [Pectobacterium wasabiae]
          Length = 235

 Score =  346 bits (888), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 164/236 (69%), Positives = 200/236 (84%), Gaps = 2/236 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q
Sbjct: 1   MRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           + G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++D
Sbjct: 59  REGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVD 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIGVMFG
Sbjct: 119 SVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           +PETTTGGNALKFY+SVRLDIRR G+IKD + + G++TRVKVVKNK+A+PFKQ EF
Sbjct: 179 NPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVGSETRVKVVKNKVAAPFKQAEF 234


>gi|224087995|ref|XP_002308284.1| predicted protein [Populus trichocarpa]
 gi|222854260|gb|EEE91807.1| predicted protein [Populus trichocarpa]
          Length = 418

 Score =  346 bits (888), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 185/330 (56%), Positives = 247/330 (74%), Gaps = 4/330 (1%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N+  K  AL+ AL QI   +GKGAIM  G +    + + VVS+GS  LDIALG GGFP
Sbjct: 52  EENMSKKELALQQALDQITSQFGKGAIMWFG-RSEAPKNVPVVSTGSFALDIALGCGGFP 110

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR+VEI+GPE+SGKTTLALH IA++QK GG C FVDAEHALDS  A+ +GV+ +NLL+S
Sbjct: 111 KGRVVEIFGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDSSLAKAIGVNTENLLLS 170

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQAL + D L+RSG+VD++V+DSVAAL P++E++G+MG++   MQARLMSQALRK
Sbjct: 171 QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKSELDGEMGDAHMAMQARLMSQALRK 230

Query: 186 LTSSISRSKCILVFINQMRMKIGVM-FGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           L+ S+S+S+ ILVFINQ+R K+    FG P E T GGNALKFY+SVRL+IRRVG IK  +
Sbjct: 231 LSHSLSQSQTILVFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIRRVGFIKKGE 290

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
             TG Q +VK+VKNK+A PFK V+F++ +G+GIS   E+I+L +K  ++ KSG+++   G
Sbjct: 291 ETTGTQVQVKIVKNKLAPPFKTVQFELEFGKGISRESEIIELALKHKLIKKSGSFYDCNG 350

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           ++   G+E  K FL  N ++ E +   LR+
Sbjct: 351 KKY-HGKEAFKEFLAHNDDVQEELMMKLRE 379


>gi|237739861|ref|ZP_04570342.1| RecA protein [Fusobacterium sp. 2_1_31]
 gi|229423469|gb|EEO38516.1| RecA protein [Fusobacterium sp. 2_1_31]
          Length = 379

 Score =  346 bits (888), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 183/322 (56%), Positives = 247/322 (76%), Gaps = 2/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KA+  A++ I + +G G IM+LG + S+   +E + +GS+ LDIALGIGG PKGRI+E
Sbjct: 20  KQKAVNDAMAAITKGFGAGLIMKLGEKSSM--NVESIPTGSINLDIALGIGGVPKGRIIE 77

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YG ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGVD+  LLISQPD GE
Sbjct: 78  VYGAESSGKTTLALHIIAEAQKQGGTVAFIDAEHALDPVYAKALGVDIDELLISQPDYGE 137

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M +   G+QARLMS+ LRKLT +++
Sbjct: 138 QALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQMGLQARLMSKGLRKLTGNLN 197

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           + K  ++FINQ+R KIGV +G   TTTGG ALKFY+SVRL+++++G++K  D   G++  
Sbjct: 198 KYKTTMIFINQIREKIGVTYGPTTTTTGGKALKFYASVRLEVKKMGTVKQGDDPIGSEVV 257

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV KNK+A PFK+  F+I+YG+GIS  GE+ID  V   I+ K+G+WFSF+ Q +GQG+E
Sbjct: 258 VKVTKNKVAPPFKEAAFEILYGKGISRVGEIIDAAVARDIIVKAGSWFSFRDQSIGQGKE 317

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
             +I L  N E+   +E+ L++
Sbjct: 318 KVRIELESNPELLAQVEADLKE 339


>gi|156902076|gb|ABU96831.1| RecA protein [Vibrio cholerae]
          Length = 229

 Score =  346 bits (888), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 159/227 (70%), Positives = 196/227 (86%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  
Sbjct: 2   GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 61

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 62  LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 121

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 122 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 181

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
            + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK
Sbjct: 182 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVK 228


>gi|269123881|ref|YP_003306458.1| recA protein [Streptobacillus moniliformis DSM 12112]
 gi|268315207|gb|ACZ01581.1| recA protein [Streptobacillus moniliformis DSM 12112]
          Length = 348

 Score =  346 bits (887), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 183/321 (57%), Positives = 244/321 (76%), Gaps = 5/321 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK K L+ AL QI + YG+G+IM+LG    +   ++V+S+GS+ +D+ALGIGG P+GRI+
Sbjct: 12  DKLKGLKVALDQITKEYGEGSIMKLGENKKM--DVKVISTGSINIDLALGIGGVPRGRII 69

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYG ESSGKTT+ALH IA++QK GG  AF+DAEHALD +YA+ LGVD+  LLISQPDTG
Sbjct: 70  EIYGAESSGKTTIALHIIAEAQKNGGLAAFIDAEHALDPVYAKALGVDVDELLISQPDTG 129

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL+I D LVRSGAVD++V+DSVAAL P+AEIEG+M +   G+QARLMS+ALRKLTSSI
Sbjct: 130 EQALDIADTLVRSGAVDVVVVDSVAALVPKAEIEGEMSDQQMGLQARLMSKALRKLTSSI 189

Query: 191 SRSKCILVFINQMRMKIGVMFGSP---ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           S+S  +++FINQ+R KIG    +P    TT+GG ALKF+SSVR++I++  SIK  D + G
Sbjct: 190 SKSDTVMIFINQIREKIGGFSFTPGVQTTTSGGRALKFFSSVRMEIKKALSIKQGDDVIG 249

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
            +T  K+ KNK+A P K+ +F I+YG+GIS   E+ DL ++  I  KSG+WFS+  ++LG
Sbjct: 250 TETIAKITKNKVAPPHKEAKFAILYGKGISHITEVFDLALEFDICKKSGSWFSYGTEKLG 309

Query: 308 QGRENSKIFLRENIEIAENIE 328
           QG+ N +  L  NIE+   IE
Sbjct: 310 QGKVNVENLLTTNIELFSKIE 330


>gi|146742340|gb|ABQ42691.1| RecA [Vibrio porteresiae]
          Length = 235

 Score =  346 bits (887), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 162/233 (69%), Positives = 199/233 (85%), Gaps = 2/233 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q
Sbjct: 1   MRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           + G TCAF+DAEHALD IYARKLGV++  LL+SQPDTGEQALEI D L RSGAVD++V+D
Sbjct: 59  REGKTCAFIDAEHALDPIYARKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMVVD 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++  S C+ +FINQ+RMKIGVMFG
Sbjct: 119 SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKASNCMCIFINQIRMKIGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           +PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+
Sbjct: 179 NPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKE 231


>gi|145351664|ref|XP_001420188.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580421|gb|ABO98481.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 369

 Score =  346 bits (887), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 172/323 (53%), Positives = 235/323 (72%), Gaps = 5/323 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL   L +I   +G GAIM+LG  G     +    SG++ LDIALG GG P+GRIVE
Sbjct: 10  KKKALARVLDEIDSNFGAGAIMRLGEAGK--AKVATFPSGAMTLDIALG-GGLPRGRIVE 66

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH +A+ QK GGT A +DAEHA D  Y+++LG+++ ++++ QP+TGE
Sbjct: 67  IYGPESSGKTTLALHAMAEMQKLGGTVAMIDAEHAFDPEYSQRLGLNVDDVIVCQPETGE 126

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
            ALE+ D LVRS AVD+I +DSVAAL PR+EIEG++G    G  ARLMSQALRK+  + +
Sbjct: 127 MALEVVDTLVRSSAVDLICVDSVAALVPRSEIEGEIGMVQVGAHARLMSQALRKINVNAA 186

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--DSITGNQ 249
           ++   ++F+NQ+R K+GV++GSPE TTGGNALK+YSSVRLDIRR   IK K  +  TG +
Sbjct: 187 KAGTTIIFLNQLRSKVGVIYGSPEVTTGGNALKYYSSVRLDIRRKEVIKGKAGEDDTGVR 246

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKV KNK+A P+K  EFD+++G G+S  G ++D G +   +++ GA++ F G++LGQG
Sbjct: 247 CKVKVAKNKVAPPYKIAEFDMLFGRGVSRDGCMLDAGEQVGTIERKGAYYYFNGEKLGQG 306

Query: 310 RENSKIFLRENIEIAENIESLLR 332
           RE +  FL EN E+   IE+ +R
Sbjct: 307 REKTLSFLDENPEMKATIETDVR 329


>gi|260182094|gb|ACX35581.1| replication-repair protein [Vibrio harveyi]
          Length = 227

 Score =  346 bits (887), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 156/227 (68%), Positives = 196/227 (86%)

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQ
Sbjct: 1   YGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQ 60

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +
Sbjct: 61  ALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQ 120

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+
Sbjct: 121 SNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRI 180

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+K+GAW+
Sbjct: 181 KVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWY 227


>gi|304334137|gb|ADM25146.1| recombinase A [Cupriavidus sp. mapud3.4]
 gi|304334149|gb|ADM25152.1| recombinase A [Cupriavidus sp. mapud3.2]
 gi|304334167|gb|ADM25161.1| recombinase A [Cupriavidus sp. cmp2]
 gi|304334175|gb|ADM25165.1| recombinase A [Cupriavidus sp. cmp60]
 gi|304334177|gb|ADM25166.1| recombinase A [Cupriavidus sp. cmp57]
          Length = 233

 Score =  346 bits (887), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 172/233 (73%), Positives = 207/233 (88%), Gaps = 1/233 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG  G + + I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ Q
Sbjct: 1   MRLG-DGEVEKDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGTCAF+DAEHALD  YA KLGV + +LLISQPDTGEQALEITD LVRSG++D+IVID
Sbjct: 60  KLGGTCAFIDAEHALDVNYASKLGVSVGDLLISQPDTGEQALEITDALVRSGSIDLIVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG
Sbjct: 120 SVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFG 179

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           SPETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T+VKVVKNK++ PF++
Sbjct: 180 SPETTTGGNALKFYASVRLDIRRIGSIKKGDDVIGNETKVKVVKNKVSPPFRE 232


>gi|304334159|gb|ADM25157.1| recombinase A [Cupriavidus sp. amp6]
 gi|304334161|gb|ADM25158.1| recombinase A [Cupriavidus sp. amp18]
 gi|304334163|gb|ADM25159.1| recombinase A [Cupriavidus sp. amp34]
 gi|304334165|gb|ADM25160.1| recombinase A [Cupriavidus sp. amp45]
 gi|304334169|gb|ADM25162.1| recombinase A [Cupriavidus sp. cmp29]
 gi|304334171|gb|ADM25163.1| recombinase A [Cupriavidus sp. cmp36]
          Length = 233

 Score =  346 bits (887), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 172/233 (73%), Positives = 208/233 (89%), Gaps = 1/233 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG  G + + I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ Q
Sbjct: 1   MRLG-DGEVEKDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGTCAF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVRSG++D+IVID
Sbjct: 60  KLGGTCAFIDAEHALDVSYAGKLGVNVGDLLISQPDTGEQALEITDALVRSGSIDLIVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG
Sbjct: 120 SVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFG 179

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           SPETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T+VKVVKNK++ PF++
Sbjct: 180 SPETTTGGNALKFYASVRLDIRRIGSIKKGDDVIGNETKVKVVKNKVSPPFRE 232


>gi|254304141|ref|ZP_04971499.1| recombination protein RecA [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148324333|gb|EDK89583.1| recombination protein RecA [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 379

 Score =  346 bits (887), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 183/322 (56%), Positives = 246/322 (76%), Gaps = 2/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KA++ A++ I + +G G IM+LG + S+   +E + +GS+ LDIALGIGG PKGRI+E
Sbjct: 20  KEKAVKDAMAAITKGFGSGLIMKLGEKSSM--NVESIPTGSINLDIALGIGGVPKGRIIE 77

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYG ESSGKTTLALH IA+ QK GGT AF+DAEHALD +YA+ LGVD+  LLISQPD GE
Sbjct: 78  IYGAESSGKTTLALHIIAECQKQGGTVAFIDAEHALDPVYAKALGVDIDELLISQPDYGE 137

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M +   G+QARLMS+ LRKLT +++
Sbjct: 138 QALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQMGLQARLMSKGLRKLTGNLN 197

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           + K  ++FINQ+R KIGV +G   TTTGG ALKFYSSVR++++++G++K  D   G++  
Sbjct: 198 KYKTTMIFINQIREKIGVTYGPTTTTTGGKALKFYSSVRMEVKKMGTVKQGDDPIGSEVV 257

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV KNK+A PFK+  F+I+YG+GIS  GE+ID  V   I+ K+G+WFSF+ Q +GQG+E
Sbjct: 258 VKVTKNKVAPPFKEAAFEILYGKGISKVGEIIDAAVAKDIIVKAGSWFSFRDQSIGQGKE 317

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
             +  L  N E+   +E+ L++
Sbjct: 318 KVRAELETNPELLAQVEADLKE 339


>gi|304334135|gb|ADM25145.1| recombinase A [Cupriavidus sp. mapud10.1]
 gi|304334139|gb|ADM25147.1| recombinase A [Cupriavidus sp. tpig.6a]
 gi|304334141|gb|ADM25148.1| recombinase A [Cupriavidus sp. tpud28.1]
 gi|304334143|gb|ADM25149.1| recombinase A [Cupriavidus sp. mapud4.3]
 gi|304334145|gb|ADM25150.1| recombinase A [Cupriavidus sp. mapud8.1]
 gi|304334147|gb|ADM25151.1| recombinase A [Cupriavidus sp. tpud27.6]
 gi|304334151|gb|ADM25153.1| recombinase A [Cupriavidus sp. tpud23.3]
 gi|304334153|gb|ADM25154.1| recombinase A [Cupriavidus sp. mapud10.5]
 gi|304334155|gb|ADM25155.1| recombinase A [Cupriavidus sp. tpud17.3]
 gi|304334157|gb|ADM25156.1| recombinase A [Cupriavidus sp. tpud31.3]
 gi|304334179|gb|ADM25167.1| recombinase A [Cupriavidus sp. ip2.14]
 gi|304334181|gb|ADM25168.1| recombinase A [Cupriavidus sp. ip2.35]
 gi|304334183|gb|ADM25169.1| recombinase A [Cupriavidus sp. pp2.22]
 gi|304334185|gb|ADM25170.1| recombinase A [Cupriavidus sp. pp2.75]
 gi|304334187|gb|ADM25171.1| recombinase A [Cupriavidus sp. mip15]
 gi|304334189|gb|ADM25172.1| recombinase A [Cupriavidus sp. ip2.89]
 gi|304334191|gb|ADM25173.1| recombinase A [Cupriavidus sp. mip2]
 gi|304334195|gb|ADM25175.1| recombinase A [Cupriavidus sp. pp2.49]
 gi|304334197|gb|ADM25176.1| recombinase A [Cupriavidus sp. mpp1.6]
 gi|304334201|gb|ADM25178.1| recombinase A [Cupriavidus sp. mpp2.18]
 gi|304334203|gb|ADM25179.1| recombinase A [Cupriavidus sp. myp8]
 gi|304334205|gb|ADM25180.1| recombinase A [Cupriavidus sp. mym10]
 gi|304334207|gb|ADM25181.1| recombinase A [Cupriavidus sp. mpp1.16]
 gi|304334209|gb|ADM25182.1| recombinase A [Cupriavidus sp. mpp2.1]
 gi|304334213|gb|ADM25184.1| recombinase A [Cupriavidus sp. mpp1.1]
 gi|304334215|gb|ADM25185.1| recombinase A [Cupriavidus sp. mpp2.26]
          Length = 233

 Score =  345 bits (886), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 171/233 (73%), Positives = 208/233 (89%), Gaps = 1/233 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG  G + + I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ Q
Sbjct: 1   MRLG-DGEVEKDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGTCAF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVRSG++D+I+ID
Sbjct: 60  KLGGTCAFIDAEHALDVNYASKLGVNVGDLLISQPDTGEQALEITDALVRSGSIDLIIID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG
Sbjct: 120 SVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFG 179

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           SPETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T+VKVVKNK++ PF++
Sbjct: 180 SPETTTGGNALKFYASVRLDIRRIGSIKKGDDVIGNETKVKVVKNKVSPPFRE 232


>gi|11245019|gb|AAG33411.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  345 bits (886), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 160/230 (69%), Positives = 197/230 (85%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IM G+G +  GELIDLGV
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMXGQGFNREGELIDLGV 230


>gi|117675763|emb|CAL69152.1| recombinase A [Subtercola boreus]
          Length = 249

 Score =  345 bits (886), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 164/247 (66%), Positives = 202/247 (81%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DMLV
Sbjct: 1   TLTLHAIANAQRDGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG++D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  ++++   ++FIN
Sbjct: 61  RSGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIFIN 120

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+R KIGV FGSPETT GG ALKFY+S+RLDIRR+ ++K+     GN+TRVKVVKNKMA 
Sbjct: 121 QLREKIGVFFGSPETTAGGKALKFYASIRLDIRRIETLKEGTEAVGNRTRVKVVKNKMAP 180

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PFK+ EFDI+YG GIS  G LID GV+  IV KSGAW+++ G +LGQG+ENS+ FL+EN 
Sbjct: 181 PFKEAEFDIIYGIGISREGSLIDFGVEHEIVRKSGAWYTYDGDQLGQGKENSRRFLKENP 240

Query: 322 EIAENIE 328
           ++A  IE
Sbjct: 241 DVALEIE 247


>gi|156106875|gb|ABU49637.1| RecA [Vibrio porteresiae]
          Length = 225

 Score =  345 bits (886), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 159/221 (71%), Positives = 193/221 (87%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 4   VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYARKLGV++  LL+SQPDTGEQALEI D L RSGAVD++V+DSVAALTP+AEIE
Sbjct: 64  HALDPIYARKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMVVDSVAALTPKAEIE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++  S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 124 GEMGDSHMGLQARMLSQAMRKLTGNLKASNCMCIFINQIRMKIGVMFGNPETTTGGNALK 183

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           FY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+
Sbjct: 184 FYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKE 224


>gi|11245119|gb|AAG33461.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  345 bits (886), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 161/233 (69%), Positives = 195/233 (83%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEIYGPESSGKTTL L  I+ +Q+ G TCAF+DAEHALD +YAR+LGV
Sbjct: 1   ALGAGGLPMGRIVEIYGPESSGKTTLTLELISAAQREGKTCAFIDAEHALDPVYARRLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
            +  LL+S PDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  KIDELLVSXPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS 290
           SIK+ D + GN+TR+KVVKNK  +PFK+    IMYG+G +  GELI+LGV  S
Sbjct: 181 SIKEGDEVVGNETRIKVVKNKXXAPFKEANTQIMYGQGFNREGELIELGVSTS 233


>gi|157493171|gb|ABV57951.1| RecA [Vibrio cholerae]
          Length = 232

 Score =  345 bits (886), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 158/227 (69%), Positives = 196/227 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 6   VETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAE 65

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE
Sbjct: 66  HALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 125

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 126 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 185

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           FY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IM
Sbjct: 186 FYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIM 232


>gi|157493207|gb|ABV57969.1| RecA [Vibrio mimicus]
          Length = 226

 Score =  345 bits (886), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 158/225 (70%), Positives = 195/225 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 2   ISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+M
Sbjct: 62  DPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEM 121

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 122 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 181

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMY
Sbjct: 182 SVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMY 226


>gi|11245069|gb|AAG33436.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  345 bits (886), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 160/230 (69%), Positives = 197/230 (85%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IM G+G +  GELIDLGV
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMXGQGFNREGELIDLGV 230


>gi|304334173|gb|ADM25164.1| recombinase A [Cupriavidus sp. cmp52]
          Length = 233

 Score =  345 bits (885), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 172/233 (73%), Positives = 208/233 (89%), Gaps = 1/233 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG  G + + I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ Q
Sbjct: 1   MRLG-DGEVEKDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGTCAF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVRSG++D+IVID
Sbjct: 60  KLGGTCAFIDAEHALDVNYAGKLGVNVGDLLISQPDTGEQALEITDALVRSGSIDLIVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG
Sbjct: 120 SVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFG 179

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           SPETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T+VKVVKNK++ PF++
Sbjct: 180 SPETTTGGNALKFYASVRLDIRRIGSIKKGDDVIGNETKVKVVKNKVSPPFRE 232


>gi|11244967|gb|AAG33385.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  345 bits (885), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 160/230 (69%), Positives = 196/230 (85%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           +IK+ + + GN+TR+KVVK K+A+PFK+    IMYG+G    GELIDLGV
Sbjct: 181 AIKEGEEVVGNETRIKVVKXKIAAPFKEANTQIMYGQGFXREGELIDLGV 230


>gi|157493183|gb|ABV57957.1| RecA [Vibrio cholerae]
 gi|157493189|gb|ABV57960.1| RecA [Vibrio cholerae]
          Length = 231

 Score =  345 bits (885), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 158/227 (69%), Positives = 196/227 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 5   VETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAE 64

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE
Sbjct: 65  HALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 124

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 125 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 184

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           FY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IM
Sbjct: 185 FYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIM 231


>gi|157493169|gb|ABV57950.1| RecA [Vibrio cholerae]
          Length = 229

 Score =  345 bits (885), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 158/227 (69%), Positives = 196/227 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 3   VETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE
Sbjct: 63  HALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 123 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 182

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           FY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IM
Sbjct: 183 FYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIM 229


>gi|290795141|gb|ADD64585.1| RecA recombinase [Vibrio kanaloae]
          Length = 230

 Score =  345 bits (885), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 163/232 (70%), Positives = 198/232 (85%), Gaps = 2/232 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +
Sbjct: 1   IMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VI
Sbjct: 59  QKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVI 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMF
Sbjct: 119 DSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           G+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+ VVKNK+A+PF
Sbjct: 179 GNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRITVVKNKIAAPF 230


>gi|7798682|gb|AAF69794.1|AF149819_1 RecA [Peanut witches'-broom phytoplasma]
          Length = 336

 Score =  345 bits (885), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 162/331 (48%), Positives = 242/331 (73%), Gaps = 4/331 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K   L   + +I++++GKG+IMQ+ S     E IE +S+GSLGLDIAL IGG P+GRIVE
Sbjct: 7   KKPPLTQTICEIEKIFGKGSIMQMNSDK--VEPIESISTGSLGLDIALSIGGLPRGRIVE 64

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPES+GKTTLALH IA++QK+GGT AF+DAE   +  YA+ +GVD   +LIS PD+GE
Sbjct: 65  IFGPESAGKTTLALHVIAEAQKSGGTVAFIDAEF-FNFNYAKTIGVDCNKMLISHPDSGE 123

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
            AL I ++L     ++++V+DSVAAL P AE+ GD+G+S  G+ AR+M+QALRK +  + 
Sbjct: 124 VALNIANLLFEKMLLNLVVVDSVAALAPLAELNGDVGDSYVGIHARMMNQALRKQSHIVY 183

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS-IKDKDSITGNQT 250
           +S  IL++INQ+R K+G+ FG+ E T GG  LKF++SVRLD+R+    IK+ D + G +T
Sbjct: 184 KSNAILIYINQLREKVGITFGNNEVTPGGKGLKFFTSVRLDVRKTSELIKENDQVVGVKT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
            V++VK+K+ SP+K V FDI+YG+GIS   E++DL V  +++ K+G W+S+  Q++GQGR
Sbjct: 244 NVRIVKSKVCSPYKTVSFDILYGKGISKVSEILDLAVSLNLIKKNGMWYSYNNQQIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           E ++ FL ++ ++A  +E  +R+N  L +++
Sbjct: 304 EKAREFLLKHPDLAHELELTIRKNYNLSSNN 334


>gi|52630811|gb|AAU84873.1| RecA [Burkholderia tuberum STM678]
          Length = 238

 Score =  345 bits (885), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 164/238 (68%), Positives = 199/238 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+VVS GS GLDIALG+GG P  R++EIY PESSGKTTL L   A+ Q+ GGT AF+DAE
Sbjct: 1   IQVVSIGSRGLDIALGVGGLPSARLIEIYAPESSGKTTLTLQVCAEMQELGGTAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVA L P+AEIE
Sbjct: 61  HALDIQYAGKLGVNVADLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAPLVPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+M +SLPG+QAR MSQA+RK T +I R+  +++FINQ+RMKIGVMF +PETTTGGNA K
Sbjct: 121 GEMADSLPGLQARPMSQAMRKRTGTIKRTNSLVIFINQIRMKIGVMFANPETTTGGNAPK 180

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           FY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A PF++  FDI+YGEGIS  GE+
Sbjct: 181 FYASVRLDIRRIGSIKKNDELIGNETRVKVVKNKVAPPFREAIFDILYGEGISRQGEI 238


>gi|195941868|ref|ZP_03087250.1| recombinase A [Borrelia burgdorferi 80a]
 gi|195942406|ref|ZP_03087788.1| recombinase A [Borrelia burgdorferi 80a]
          Length = 307

 Score =  345 bits (884), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 164/289 (56%), Positives = 231/289 (79%), Gaps = 4/289 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K +A+E A  QI++ +GKG+++++G +  + +GI+ +SSGS+ LD ALGIGG+P+GRI+E
Sbjct: 20  KEEAIELARVQIEKAFGKGSLIKMG-ESPVGQGIKSMSSGSIVLDEALGIGGYPRGRIIE 78

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+ LGV++  L +SQPDTGE
Sbjct: 79  IFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQPDTGE 138

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI + L+RSG VD+IV+DSVAALTP+ EI+G+MG+S  G+QARLMS+ALRK+T  +S
Sbjct: 139 QALEIAEHLIRSGGVDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKITGILS 198

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKDSITGN 248
           +S   ++FINQ+RM+IGVMFG+PETTTGGNALKFYSS+RL++R++  +      D + GN
Sbjct: 199 KSNTCIMFINQIRMRIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTRSGSSDDVIGN 258

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           + RVK+VKNK+A PF++VE  I +G+GIS    ++D  +K +++ K+G+
Sbjct: 259 KIRVKIVKNKVAPPFRKVELIIYFGKGISREAGILDAAIKHNLIQKTGS 307


>gi|11244973|gb|AAG33388.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  345 bits (884), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 160/230 (69%), Positives = 197/230 (85%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           +IK+ + + GN+TR+KVVK K+A+PFK+    IMYG+G +  GELIDLGV
Sbjct: 181 AIKEGEEVVGNETRIKVVKIKIAAPFKEANTQIMYGQGFNREGELIDLGV 230


>gi|144575175|gb|AAZ43969.2| recombination protein [Mycoplasma synoviae 53]
          Length = 325

 Score =  345 bits (884), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 161/323 (49%), Positives = 238/323 (73%), Gaps = 2/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           ++K +++AL++I++ +GK +IM L    +    +EV SSGS+ LD ALGI G PKG+I+E
Sbjct: 3   ENKNIKSALNEIEKKFGKESIMVLRDIPN--ADVEVFSSGSILLDNALGINGLPKGKIIE 60

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA+ QK GG  AF+DAEH++D  YA  +GVD+ NL++SQPD+GE
Sbjct: 61  IYGPESSGKTTLTLHAIAEVQKNGGIAAFIDAEHSIDPQYAANIGVDIDNLILSQPDSGE 120

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D+L +SG VD+IV+DSVAAL P AE+ G+M +   G QARLMS+ALRK+T +++
Sbjct: 121 QALEIVDILAKSGNVDLIVVDSVAALVPEAELNGEMKDQQIGAQARLMSKALRKITGNLN 180

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +++  ++FINQ+R K+GV+FG+PETTTGG ALKFY+S+R+++R+   I +   I GN+ +
Sbjct: 181 KNQTTIIFINQIREKVGVIFGNPETTTGGRALKFYASIRIEVRKGSQITEGKDILGNEVK 240

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
            KVVKNK+++P+K  + +I++ +GI  + EL  +G++  I DK G+W+ +K   + QG+ 
Sbjct: 241 FKVVKNKLSAPYKVTQSEILFSKGIDRYNELATIGIENKIFDKKGSWYYYKENNVAQGKA 300

Query: 312 NSKIFLRENIEIAENIESLLRQN 334
             K ++  N EI   I+  L+ N
Sbjct: 301 ALKTYIESNPEIISEIQDTLKSN 323


>gi|71894572|ref|YP_278680.1| recombinase A [Mycoplasma synoviae 53]
          Length = 329

 Score =  344 bits (883), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 161/323 (49%), Positives = 238/323 (73%), Gaps = 2/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           ++K +++AL++I++ +GK +IM L    +    +EV SSGS+ LD ALGI G PKG+I+E
Sbjct: 7   ENKNIKSALNEIEKKFGKESIMVLRDIPN--ADVEVFSSGSILLDNALGINGLPKGKIIE 64

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA+ QK GG  AF+DAEH++D  YA  +GVD+ NL++SQPD+GE
Sbjct: 65  IYGPESSGKTTLTLHAIAEVQKNGGIAAFIDAEHSIDPQYAANIGVDIDNLILSQPDSGE 124

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D+L +SG VD+IV+DSVAAL P AE+ G+M +   G QARLMS+ALRK+T +++
Sbjct: 125 QALEIVDILAKSGNVDLIVVDSVAALVPEAELNGEMKDQQIGAQARLMSKALRKITGNLN 184

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +++  ++FINQ+R K+GV+FG+PETTTGG ALKFY+S+R+++R+   I +   I GN+ +
Sbjct: 185 KNQTTIIFINQIREKVGVIFGNPETTTGGRALKFYASIRIEVRKGSQITEGKDILGNEVK 244

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
            KVVKNK+++P+K  + +I++ +GI  + EL  +G++  I DK G+W+ +K   + QG+ 
Sbjct: 245 FKVVKNKLSAPYKVTQSEILFSKGIDRYNELATIGIENKIFDKKGSWYYYKENNVAQGKA 304

Query: 312 NSKIFLRENIEIAENIESLLRQN 334
             K ++  N EI   I+  L+ N
Sbjct: 305 ALKTYIESNPEIISEIQDTLKSN 327


>gi|294101403|ref|YP_003553261.1| recA protein [Aminobacterium colombiense DSM 12261]
 gi|293616383|gb|ADE56537.1| recA protein [Aminobacterium colombiense DSM 12261]
          Length = 370

 Score =  344 bits (882), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 170/327 (51%), Positives = 239/327 (73%), Gaps = 4/327 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K+ N   +   LE A+  I+  +G+G+IM+LG    +   +EV+S+G L LD+ALGIGG 
Sbjct: 3   KKKNPQTREDILELAIDDIRSKFGEGSIMRLGDPFKV--QVEVISTGILPLDVALGIGGL 60

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRIVEI+GPE SGKTT+ALH IA++QK GG  AF+DAEHALD   A  LGVD+++L +
Sbjct: 61  PKGRIVEIFGPEGSGKTTVALHGIAEAQKAGGIAAFIDAEHALDPRLAASLGVDVQSLYV 120

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           +QPD+GEQAL + D LVRSGAVD++V+DSVAALTP+AEI+G +G+S  G+QARLMS ALR
Sbjct: 121 AQPDSGEQALYVLDTLVRSGAVDLVVVDSVAALTPQAEIDGKIGDSQLGLQARLMSYALR 180

Query: 185 KLTSSISRSKCILVFINQMRMKI--GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           +LTS+ISRS C++VFINQ+R KI  G   G  ETTTGG ALKFYSSVR++++R  SI   
Sbjct: 181 RLTSAISRSNCVVVFINQLRAKISTGYSSGPQETTTGGRALKFYSSVRVEVKRGKSINKG 240

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           +   G++  +KVVKNK A PF+     ++YG+G+     L+D+ +   ++ K G+W ++K
Sbjct: 241 EDAIGHELWMKVVKNKQAPPFRTAHASLIYGKGVPKGMSLLDMAIDLEVMKKKGSWLAYK 300

Query: 303 GQRLGQGRENSKIFLRENIEIAENIES 329
           G+ +GQG++N   +L ++ E+ E + +
Sbjct: 301 GETIGQGKDNVAQYLEDHPELMEELTT 327


>gi|169743002|gb|ACA66124.1| recombinase A [Geobacillus lituanicus]
          Length = 241

 Score =  344 bits (882), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 165/241 (68%), Positives = 202/241 (83%), Gaps = 2/241 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG Q  +   + VV SGSL LDIALG+GG+P+GRIVEIYGPESSGKTT+ALH IA+ Q
Sbjct: 1   MKLGEQ--VDRKVSVVPSGSLALDIALGVGGYPRGRIVEIYGPESSGKTTVALHAIAEVQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG  AF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI + LVRSGAVDIIVID
Sbjct: 59  KRGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEG+MG++  G+QARLMSQALRKL+ +I++SK I +FINQ+R K+GVMFG
Sbjct: 119 SVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETT GG ALKFY+SVRL++RR   IK  + + GN+T++KVVKNK+A PFK  + DIMY
Sbjct: 179 NPETTPGGRALKFYASVRLEVRRAEQIKQGNDMVGNKTKIKVVKNKVAPPFKTADVDIMY 238

Query: 273 G 273
           G
Sbjct: 239 G 239


>gi|148879029|emb|CAM07030.1| RecA protein [Mycobacterium sp. MHSD12]
          Length = 289

 Score =  344 bits (882), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 183/280 (65%), Positives = 231/280 (82%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+AL  +A +Q  GG  AF+ AE
Sbjct: 9   ISVIPTGSISLDVALGIGGLPRGRVVEIYGPESSGKTTVALXAVAXAQAAGGIAAFIXAE 68

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
            ALD  YA+KLGVD  +LL+SQPDTGEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIE
Sbjct: 69  XALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDILVIDSVAALVPRAEIE 128

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFGSPETTTGG ALK
Sbjct: 129 GEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALK 188

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLD+ R+ ++KD     GN+TRVKVVK K++ PFKQ EFDI+YG+GIS  G LID
Sbjct: 189 FYASVRLDVXRIETLKDGTDAVGNRTRVKVVKXKVSPPFKQAEFDILYGQGISREGSLID 248

Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           +GV+   + KSG+WF++ G++LGQG+EN++ FL EN+++A
Sbjct: 249 MGVEHGFIRKSGSWFTYXGEQLGQGKENARKFLLENVDVA 288


>gi|70904884|gb|AAZ14020.1| RecA [Burkholderia cenocepacia]
          Length = 226

 Score =  344 bits (882), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 166/222 (74%), Positives = 197/222 (88%), Gaps = 1/222 (0%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           A  QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESS
Sbjct: 4   APRQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESS 62

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD
Sbjct: 63  GKTTLTLQVIAELQKMGGTAAFIDAEHALDVQYASKLGVNVPDLLISQPDTGEQALEITD 122

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++
Sbjct: 123 ALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVI 182

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK
Sbjct: 183 FINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIK 224


>gi|11245025|gb|AAG33414.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  343 bits (881), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 159/230 (69%), Positives = 196/230 (85%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           AL  GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALXAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           +IK+ + + GN+TR+KVVK K+A+PFK+    IMYG+G +  GELIDLGV
Sbjct: 181 AIKEGEEVVGNETRIKVVKTKIAAPFKEANTQIMYGQGFNREGELIDLGV 230


>gi|157493191|gb|ABV57961.1| RecA [Vibrio mimicus]
          Length = 227

 Score =  343 bits (881), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 158/227 (69%), Positives = 195/227 (85%)

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           G GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++
Sbjct: 1   GAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNI 60

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
             LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++
Sbjct: 61  DELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARML 120

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+I
Sbjct: 121 SQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAI 180

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
           K+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLG
Sbjct: 181 KEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLG 227


>gi|156902070|gb|ABU96828.1| RecA protein [Vibrio cholerae]
          Length = 228

 Score =  343 bits (881), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 158/226 (69%), Positives = 195/226 (86%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  L
Sbjct: 1   GLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDEL 60

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           L+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA
Sbjct: 61  LVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQA 120

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           +RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ 
Sbjct: 121 MRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEG 180

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK
Sbjct: 181 EEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVK 226


>gi|255080474|ref|XP_002503817.1| recA DNA recombinase [Micromonas sp. RCC299]
 gi|226519084|gb|ACO65075.1| recA DNA recombinase [Micromonas sp. RCC299]
          Length = 515

 Score =  343 bits (881), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 171/326 (52%), Positives = 236/326 (72%), Gaps = 9/326 (2%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLG--SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           K KAL+  L +I   +GKG+IM+LG  SQ  +        SG++ LDIALG GG P+GRI
Sbjct: 130 KKKALDRVLGEIDANFGKGSIMKLGEASQAKV----ATFPSGAMTLDIALG-GGMPRGRI 184

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VE+YGPESSGKTTLALH +A+ QK GGT A +DAEHA D  Y+++LG+D+ ++++ QP+T
Sbjct: 185 VEVYGPESSGKTTLALHAMAEMQKLGGTVALIDAEHAFDPEYSQRLGLDVDDVVVCQPET 244

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GE ALE+ D LVRS AVD+IV+DSVAAL PR+EIEG++G    G  ARLMSQALRK+  +
Sbjct: 245 GEMALEVVDTLVRSSAVDLIVVDSVAALVPRSEIEGEIGMVQVGAHARLMSQALRKINVN 304

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI--TG 247
            +++   ++F+NQ+R K+GV++G+PE TTGGNALKFY+SVRLDIRR   I+ K      G
Sbjct: 305 AAKAGVTIIFLNQLRSKVGVIYGNPEITTGGNALKFYASVRLDIRRKEVIRGKAGADDEG 364

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
            + +VKV KNK+A P+K  EFD+++G GIS  G ++D   +  ++ + GAW+S+  +RLG
Sbjct: 365 VRVKVKVAKNKIAPPYKTAEFDMLFGRGISRDGCMLDAADELGVITRRGAWYSYGEERLG 424

Query: 308 QGRENSKIFLRENIEIAENIESLLRQ 333
           QGRE +  FL  N EI + +E  +R+
Sbjct: 425 QGREKAAEFLDANPEIKKQVEEDVRR 450


>gi|157493205|gb|ABV57968.1| RecA [Vibrio mimicus]
          Length = 231

 Score =  343 bits (880), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 157/226 (69%), Positives = 195/226 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 6   VETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAE 65

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE
Sbjct: 66  HALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 125

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 126 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 185

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 186 FYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQI 231


>gi|11244991|gb|AAG33397.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  343 bits (880), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 160/230 (69%), Positives = 195/230 (84%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           +IK+ + + GN+TR+KVVKNK+A+PFK     IM G+G    GELIDLGV
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKXANTQIMXGQGFXREGELIDLGV 230


>gi|157493177|gb|ABV57954.1| RecA [Vibrio cholerae]
 gi|157493185|gb|ABV57958.1| RecA [Vibrio cholerae]
 gi|157493187|gb|ABV57959.1| RecA [Vibrio cholerae]
          Length = 230

 Score =  343 bits (880), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 157/226 (69%), Positives = 195/226 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 5   VETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAE 64

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE
Sbjct: 65  HALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 124

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 125 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 184

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 185 FYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQI 230


>gi|308171322|gb|ADO15980.1| RecA [Vibrio ichthyoenteri ATCC 700023]
          Length = 227

 Score =  343 bits (880), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 156/226 (69%), Positives = 196/226 (86%)

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VE+YGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDT
Sbjct: 1   VEVYGPESSGKTTLTLELIAAAQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDT 60

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT +
Sbjct: 61  GEQALEICDALARSGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGN 120

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           + +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+
Sbjct: 121 LKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNE 180

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           TR+KVVKNK+A+PFKQ E  I+YG+G +  GEL+DLGVK  +++K+
Sbjct: 181 TRIKVVKNKIAAPFKQAETQILYGQGFNREGELVDLGVKHKLIEKA 226


>gi|156902074|gb|ABU96830.1| RecA protein [Vibrio cholerae]
          Length = 226

 Score =  343 bits (879), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 158/225 (70%), Positives = 194/225 (86%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGV++  
Sbjct: 2   GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPIYAKKLGVNIDE 61

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 62  LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 121

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 122 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 181

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
            + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLG
Sbjct: 182 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLG 226


>gi|30142061|gb|AAP13813.1| recombinase A subunit [Brenneria salicis ATCC 15712]
          Length = 234

 Score =  343 bits (879), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 163/235 (69%), Positives = 201/235 (85%), Gaps = 2/235 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG      + +E++S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGEDRP--KDVEIISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKI
Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           GVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D + G++TRVKVVKNK+A+P
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEVVGSETRVKVVKNKVAAP 233


>gi|11245161|gb|AAG33482.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  343 bits (879), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 159/230 (69%), Positives = 195/230 (84%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI  PESSG TTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPXGRIVEIXXPESSGXTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGV
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGV 230


>gi|282855978|ref|ZP_06265269.1| RecA protein [Pyramidobacter piscolens W5455]
 gi|282586197|gb|EFB91474.1| RecA protein [Pyramidobacter piscolens W5455]
          Length = 386

 Score =  342 bits (878), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 171/323 (52%), Positives = 236/323 (73%), Gaps = 5/323 (1%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LE AL  I+  +G G+IM+LG + +    +EV+ +G L LD+ALGIGG P+GRIVE++GP
Sbjct: 16  LEQALDDIRSKFGDGSIMRLGERNT--ANVEVIPTGILPLDVALGIGGLPRGRIVEVFGP 73

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           E SGKTTLALH IA++QK GG  AF+DAEHALD   A  LGV +++L +SQPD+GEQAL 
Sbjct: 74  EGSGKTTLALHAIAEAQKAGGVAAFIDAEHALDPRLAAALGVQIESLYLSQPDSGEQALF 133

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I + LVRSGAVDI+V+DSVAALTP+AEI+G +GES  G+QARLMS  LR+LT+SI+RS C
Sbjct: 134 ILETLVRSGAVDIVVVDSVAALTPQAEIDGTIGESQVGLQARLMSYGLRRLTASIARSNC 193

Query: 196 ILVFINQMRMKI--GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
           ++VFINQ+R  I  G   G  ETTTGG ALKFY+SVR+++RR   I   D + G++  +K
Sbjct: 194 VVVFINQLRATIPTGYSKGPTETTTGGRALKFYTSVRIEVRRGKQISKGDDVIGHELYIK 253

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VVKNK A PF+     ++YG+GI     ++D+ + A++V + G+W ++KG+ L QG++  
Sbjct: 254 VVKNKQAPPFRSAHCSLIYGKGIPLTMSIVDMAIDANVVKRKGSWLTYKGETLAQGKDRL 313

Query: 314 KIFLRENIE-IAENIESLLRQNA 335
             FL ++ E +AE  +++L Q A
Sbjct: 314 AEFLDKSPEMLAEIRKTVLDQAA 336


>gi|157493197|gb|ABV57964.1| RecA [Vibrio mimicus]
 gi|157493199|gb|ABV57965.1| RecA [Vibrio mimicus]
 gi|157493203|gb|ABV57967.1| RecA [Vibrio mimicus]
          Length = 225

 Score =  342 bits (877), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 157/224 (70%), Positives = 194/224 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 2   ISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+M
Sbjct: 62  DPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEM 121

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 122 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 181

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IM
Sbjct: 182 SVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIM 225


>gi|89145173|emb|CAJ57522.1| recombinase A [Microbacterium kitamiense]
          Length = 238

 Score =  342 bits (877), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 161/237 (67%), Positives = 196/237 (82%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL LH IA  Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DML
Sbjct: 1   TTLTLHAIANVQRAGGIAAFIDAEHALDPDYAQKLGVDIDALLVSQPDTGEQALEIADML 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGA+D++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  ++++   ++FI
Sbjct: 61  VRSGAIDLVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA
Sbjct: 121 NQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKMA 180

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317
            PFKQ EFDI+YG GIS  G LID GV+ +IV KSGAW+++ G++LGQG+EN++ FL
Sbjct: 181 PPFKQAEFDILYGVGISREGSLIDFGVEHAIVKKSGAWYTYDGEQLGQGKENARNFL 237


>gi|156902066|gb|ABU96826.1| RecA protein [Vibrio cholerae]
          Length = 226

 Score =  342 bits (877), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 157/225 (69%), Positives = 194/225 (86%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  
Sbjct: 2   GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 61

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 62  LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 121

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 122 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 181

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
            + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLG
Sbjct: 182 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLG 226


>gi|157493173|gb|ABV57952.1| RecA [Vibrio cholerae]
          Length = 224

 Score =  342 bits (877), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 157/224 (70%), Positives = 194/224 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+M
Sbjct: 61  DPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IM
Sbjct: 181 SVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIM 224


>gi|15558896|dbj|BAB64921.1| chloroplast DNA recombination protein RECA [Chlamydomonas
           reinhardtii]
          Length = 414

 Score =  342 bits (877), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 172/321 (53%), Positives = 223/321 (69%), Gaps = 4/321 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K+K     + +I R +G G+IM+L    S+   IE   SGSL LD ALG GG+P+GRI+E
Sbjct: 62  KAKLFNETVDRITRRFGDGSIMRLSD--SVTANIETFPSGSLTLDAALG-GGYPRGRIIE 118

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPE+SGKTTLA+H   + Q+ GGT A++D EHA D  YA   G  L N   +QP TGE
Sbjct: 119 VYGPEASGKTTLAMHGCGEIQRLGGTVAYIDVEHAFDRTYA-SAGHHLNNFWYAQPMTGE 177

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           +ALE+ D L RS   D++VIDSVAAL PRAE+EGD+G    G QARL+SQALRKL++S S
Sbjct: 178 EALEVMDELCRSNVCDLVVIDSVAALVPRAELEGDIGSVQIGSQARLLSQALRKLSASAS 237

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +SK  L FINQ+R KIGVMFG+PETT+GGNALK+YSSVR+DIR+  ++ + D    N+ R
Sbjct: 238 KSKTTLFFINQLRNKIGVMFGNPETTSGGNALKYYSSVRIDIRKKETLSESDQAYANRVR 297

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
            KVVKNK+ASP K+  F+I YG GI F G LID   +  ++ + GA++ +  QRLGQGRE
Sbjct: 298 AKVVKNKVASPHKEALFEIYYGRGIDFLGGLIDTAERLKVLTRRGAFYYYGDQRLGQGRE 357

Query: 312 NSKIFLRENIEIAENIESLLR 332
                LRE+ E    IE+ +R
Sbjct: 358 KVLAALREDAERTAAIEAAVR 378


>gi|293363970|ref|ZP_06610706.1| RecA protein [Mycoplasma alligatoris A21JP2]
 gi|292552460|gb|EFF41234.1| RecA protein [Mycoplasma alligatoris A21JP2]
          Length = 327

 Score =  342 bits (877), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 161/316 (50%), Positives = 233/316 (73%), Gaps = 2/316 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K+  ++ ALS I + +GK +IM LG    I   I+  SSGS  LD  LGIGGFPKGR++E
Sbjct: 7   KNIIIKEALSSIGKKFGKESIMLLGGVPDI--SIDTFSSGSYALDKILGIGGFPKGRVIE 64

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ LH IA+ QK GG  AF+DAEH++D +YA  +GVD+ NL++SQPD+GE
Sbjct: 65  IYGPESSGKTTVCLHAIAEIQKKGGIAAFIDAEHSIDPVYASNIGVDVDNLILSQPDSGE 124

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D+L ++G +D+IV+DSVAAL P AE+ GDM +   GMQARLMS+ALRK+  +++
Sbjct: 125 QALEIVDILAKNGNIDLIVVDSVAALVPEAELNGDMKDQQIGMQARLMSKALRKIAGNLN 184

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++K  ++FINQ+R K+GV+FG+PETT+GG ALKFYSS+R+++R+  SI D   I GN+ +
Sbjct: 185 KNKTTVIFINQIREKVGVIFGNPETTSGGRALKFYSSIRVEVRKGTSITDTKDIIGNEVK 244

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
            KVVKNK+A+P+K    +I++ +GI+   EL++  ++  +V K  AW+S   + + QG++
Sbjct: 245 FKVVKNKLAAPYKSAVSEIIFSKGINKTNELLNFAIEKGLVIKKAAWYSIDEKNVAQGQK 304

Query: 312 NSKIFLRENIEIAENI 327
             + ++ ENIE   ++
Sbjct: 305 AMEAYIEENIEFKNDL 320


>gi|117675787|emb|CAL69164.1| recombinase A [Frigoribacterium faeni]
          Length = 238

 Score =  342 bits (877), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 162/236 (68%), Positives = 195/236 (82%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DMLV
Sbjct: 1   TLTLHAIANAQRNGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG++D++VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  +S++   ++FIN
Sbjct: 61  RSGSIDLVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLSQTGTTMIFIN 120

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA 
Sbjct: 121 QLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGSDAVGNRTRVKVVKNKMAP 180

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317
           PFKQ EFDI+YG GIS  G LID GV+  IV KSGAW++++G +LGQG+ENS+ FL
Sbjct: 181 PFKQAEFDILYGVGISREGSLIDFGVEHGIVRKSGAWYTYEGDQLGQGKENSRNFL 236


>gi|23194277|gb|AAN15086.1| RecA protein [Vibrio cholerae]
          Length = 227

 Score =  342 bits (876), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 157/225 (69%), Positives = 194/225 (86%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL
Sbjct: 1   LPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELL 60

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+
Sbjct: 61  VSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAM 120

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ +
Sbjct: 121 RKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGE 180

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
            + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK
Sbjct: 181 EVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVK 225


>gi|148910572|gb|ABR18358.1| unknown [Picea sitchensis]
          Length = 454

 Score =  342 bits (876), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 189/358 (52%), Positives = 251/358 (70%), Gaps = 20/358 (5%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEG---IEVVSSGSLGLDIALGIGGFP 65
           + +K  AL+AALSQI   +GK  +M LG     F G   + V+S+GSL LD+ALGIGGFP
Sbjct: 92  LSEKEAALQAALSQIGSTFGKETVMWLGR----FLGRRNVPVISTGSLNLDVALGIGGFP 147

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR+VEIYGPE+SGKTTL LHTIA++Q+ GG C F+DAEHALD   A  +GV  +NLL++
Sbjct: 148 KGRMVEIYGPEASGKTTLGLHTIAEAQRNGGYCVFIDAEHALDPSLAEAIGVKTENLLLA 207

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQAL + D  +RSG+VD+IV+DSVAAL P++E+EG+MG++   +QARLMSQALRK
Sbjct: 208 QPDCGEQALSLVDTFIRSGSVDVIVVDSVAALVPKSELEGEMGDAHMAVQARLMSQALRK 267

Query: 186 LTSSISRSKCILVFINQMRMKIGVM--FGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           LT S+SRS+ +L+FINQ+R K+     FG P E T GGNALKFY+S+RL+IRR G +K  
Sbjct: 268 LTPSLSRSQTLLIFINQVRSKLSSFGGFGGPSEVTAGGNALKFYASIRLNIRRTGLLKRG 327

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           D   G+Q  VKV KNK+A PFK  EF+I +G GIS   E++DLG K  ++ KSG  +   
Sbjct: 328 DETFGSQILVKVAKNKLAPPFKTAEFEIEFGRGISCEAEILDLGCKHDMITKSGHHYKLN 387

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           G+    G+E +K +LREN +I   + S L++   L+ D       I  +D  +KD +D
Sbjct: 388 GETF-NGKEKAKSYLRENDQIRYELMSKLKEK--LLGD-------IGQEDVLEKDVSD 435


>gi|327415903|gb|AEA75517.1| recombinase A [Aliivibrio fischeri]
 gi|327415905|gb|AEA75518.1| recombinase A [Aliivibrio fischeri]
 gi|327415907|gb|AEA75519.1| recombinase A [Aliivibrio fischeri]
 gi|327415909|gb|AEA75520.1| recombinase A [Aliivibrio fischeri]
 gi|327415911|gb|AEA75521.1| recombinase A [Aliivibrio fischeri]
 gi|327415913|gb|AEA75522.1| recombinase A [Aliivibrio fischeri]
 gi|327415915|gb|AEA75523.1| recombinase A [Aliivibrio fischeri]
 gi|327415917|gb|AEA75524.1| recombinase A [Aliivibrio fischeri]
 gi|327415919|gb|AEA75525.1| recombinase A [Aliivibrio fischeri]
 gi|327415921|gb|AEA75526.1| recombinase A [Aliivibrio fischeri]
 gi|327415923|gb|AEA75527.1| recombinase A [Aliivibrio fischeri]
 gi|327415927|gb|AEA75529.1| recombinase A [Aliivibrio fischeri]
 gi|327415929|gb|AEA75530.1| recombinase A [Aliivibrio fischeri]
 gi|327415931|gb|AEA75531.1| recombinase A [Aliivibrio fischeri]
 gi|327415933|gb|AEA75532.1| recombinase A [Aliivibrio fischeri]
          Length = 230

 Score =  341 bits (875), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 161/232 (69%), Positives = 199/232 (85%), Gaps = 2/232 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  I
Sbjct: 1   KGSIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG
Sbjct: 119 MVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           VMFG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+KVVKNK+A
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGNETRIKVVKNKIA 230


>gi|256384198|gb|ACU78768.1| protein RecA [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256385030|gb|ACU79599.1| protein RecA [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296456012|gb|ADH22247.1| protein RecA [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 345

 Score =  341 bits (874), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 172/326 (52%), Positives = 244/326 (74%), Gaps = 6/326 (1%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SK L+ A+ +I++++GKG+IM LG   ++   IE  SSGSL LD ALGIGG+PKGRI+EI
Sbjct: 22  SKELKEAIKEIEKMFGKGSIMVLGQSDNL--NIETFSSGSLLLDNALGIGGYPKGRIIEI 79

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL+LH I + QK GG  AF+DAEH+L+  Y + LG+D   LL+SQPD GEQ
Sbjct: 80  YGPESSGKTTLSLHAICEVQKLGGIAAFIDAEHSLEPKYCQTLGIDTNKLLVSQPDNGEQ 139

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           AL+I +ML+ S ++D+IV+DSVAAL P+ E++G+MG+   G+QAR+MS+ALRKL   I++
Sbjct: 140 ALDILEMLINSNSIDLIVVDSVAALVPKTELDGEMGDQSIGLQARMMSKALRKLNGLIAK 199

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           S   ++FINQ+R KIGV+FG+PETTTGG ALKF+SS+RL++R+  +I +   I GN+ ++
Sbjct: 200 SNTTVIFINQLREKIGVIFGNPETTTGGKALKFFSSIRLEVRKAENILNNSEIIGNKIKI 259

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK A PFK     ++Y +GI   GEL+DL V   I++KSG W+S++ +++GQGR +
Sbjct: 260 KVVKNKTAIPFKTTTISLLYNKGIDKLGELVDLLVSYEIIEKSGVWYSYQNEKIGQGRTS 319

Query: 313 SKIFLR--ENI--EIAENIESLLRQN 334
              +L   EN   E+ E ++ L++Q+
Sbjct: 320 VIQWLNADENKINELTEQVKKLIKQD 345


>gi|332178112|gb|AEE13801.1| Protein recA [Thermodesulfobium narugense DSM 14796]
          Length = 343

 Score =  340 bits (873), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 167/316 (52%), Positives = 235/316 (74%), Gaps = 5/316 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ +++++A+SQI+R +GKG+IM+LG        ++V+SSGS+ +DI  GIGG P+GRI+
Sbjct: 6   DQERSIDSAISQIERRFGKGSIMRLGEAEP--PKVDVISSGSMAIDIISGIGGLPRGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPE SGKTT+ALH IA++QK GG  AF+DAEHALD  YA ++GV+LKNLLISQP TG
Sbjct: 64  EIYGPEGSGKTTVALHAIAEAQKAGGVAAFIDAEHALDVYYAERIGVNLKNLLISQPTTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ALEI D LVRS A+ I+VIDSVAAL P++E+EG+MG+    +QARLMSQALRKLT ++
Sbjct: 124 EEALEIADTLVRSNAIAIVVIDSVAALIPKSELEGEMGDVTIALQARLMSQALRKLTGTV 183

Query: 191 SRSKCILVFINQMRMKI--GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK-DSITG 247
           ++SK   VFINQ+R K+  G   G  E T GG ALKFY+S+R+++RR  +IK     I G
Sbjct: 184 NKSKTACVFINQLREKVSTGYTSGPIEVTPGGRALKFYASMRIEVRRGEAIKSSVGEIIG 243

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
            + ++K+VKNK+A PFK+ E  ++YG+GI    +L +  +    + +SG+++ FK  RLG
Sbjct: 244 AKMKIKIVKNKLAPPFKETELILIYGQGIDKTTDLFETALNLGFITRSGSFYYFKDLRLG 303

Query: 308 QGRENSKIFLRENIEI 323
           QG++ S+  L EN ++
Sbjct: 304 QGKDASRALLDENADL 319


>gi|317447062|emb|CBX24360.1| RecA protein [Thiomonas perometabolis]
          Length = 216

 Score =  340 bits (873), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 161/216 (74%), Positives = 192/216 (88%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGTCAF+DAEHALD  YA KLGV L +LLISQPDTGEQALEI D LV
Sbjct: 1   TLTLQVIAEMQKLGGTCAFIDAEHALDVQYASKLGVQLPDLLISQPDTGEQALEIVDALV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG+VD+IVIDSVAALTP+AEIEG+MG+SLPG+QARLMSQALRKLT++I R+ C+++FIN
Sbjct: 61  RSGSVDMIVIDSVAALTPKAEIEGEMGDSLPGLQARLMSQALRKLTANIKRTNCLVIFIN 120

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK  + + G++TRVKVVKNK+A 
Sbjct: 121 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKKGEDVIGSETRVKVVKNKVAP 180

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           PFKQ EFDI+YGEG+S  GE++DLGV A +V+KSG+
Sbjct: 181 PFKQAEFDILYGEGVSREGEIVDLGVLAKLVEKSGS 216


>gi|295825212|gb|ADG23043.1| recombinase A [Erwinia sp. CFBP 5882]
          Length = 232

 Score =  340 bits (873), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 158/221 (71%), Positives = 192/221 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 11  VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIASAQRKGKTCAFIDAE 70

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIE
Sbjct: 71  HALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIE 130

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G++G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 131 GEIGDSHMGLAARMMSQAMRKLAGNLKNSGTLLIFINQIRMKIGVMFGNPETTTGGNALK 190

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           FY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A+PFKQ
Sbjct: 191 FYASVRLDIRRIGAIKEGDEVVGSETRVKVVKNKVAAPFKQ 231


>gi|306517555|emb|CBO93068.1| DNA recombinase A [Pantoea stewartii subsp. stewartii]
          Length = 219

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 157/218 (72%), Positives = 191/218 (87%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSL LDIALG GG P GRIVEIYGPE+SGKTTL L  IA +Q+ G TCAF+DAEHALD +
Sbjct: 1   GSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPV 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S
Sbjct: 61  YAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDS 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
             G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR
Sbjct: 121 HMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVR 180

Query: 231 LDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           LDIRR+G+IK+ D++ G++TRVKVVKNK+A+PFKQ EF
Sbjct: 181 LDIRRIGAIKEGDNVVGSETRVKVVKNKIAAPFKQAEF 218


>gi|157493193|gb|ABV57962.1| RecA [Vibrio mimicus]
          Length = 224

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 156/224 (69%), Positives = 193/224 (86%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  L
Sbjct: 1   GLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDEL 60

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           L+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA
Sbjct: 61  LVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQA 120

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           +RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ 
Sbjct: 121 MRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEG 180

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
           + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLG
Sbjct: 181 EEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLG 224


>gi|156902080|gb|ABU96833.1| RecA protein [Vibrio cholerae]
          Length = 225

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 156/224 (69%), Positives = 193/224 (86%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  
Sbjct: 2   GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 61

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 62  LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 121

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 122 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 181

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
            + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDL
Sbjct: 182 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDL 225


>gi|157493195|gb|ABV57963.1| RecA [Vibrio mimicus]
 gi|157493201|gb|ABV57966.1| RecA [Vibrio mimicus]
          Length = 224

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 156/223 (69%), Positives = 193/223 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 2   ISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+M
Sbjct: 62  DPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEM 121

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 122 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 181

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 182 SVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQI 224


>gi|327415925|gb|AEA75528.1| recombinase A [Aliivibrio fischeri]
          Length = 230

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 160/232 (68%), Positives = 199/232 (85%), Gaps = 2/232 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  I
Sbjct: 1   KGSIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +VIDSVAALTP+A+IEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG
Sbjct: 119 MVIDSVAALTPKAQIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           VMFG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+KVVKNK+A
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGNETRIKVVKNKIA 230


>gi|66268066|gb|AAY43119.1| RecA [Vibrio cholerae]
          Length = 228

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 157/228 (68%), Positives = 195/228 (85%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+
Sbjct: 1   PMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLV 60

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+R
Sbjct: 61  SQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMR 120

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + 
Sbjct: 121 KLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEE 180

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           + GN+TR+KVVKNK+A+PFK+    IMYG+  +  GELIDLGVK  +V
Sbjct: 181 VVGNETRIKVVKNKIAAPFKEANTHIMYGQRFNREGELIDLGVKHKMV 228


>gi|157493225|gb|ABV57978.1| RecA [Vibrio cholerae]
          Length = 220

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 155/220 (70%), Positives = 191/220 (86%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+K
Sbjct: 1   LDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKK 60

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           LGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+
Sbjct: 61  LGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGL 120

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
           QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIR
Sbjct: 121 QARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR 180

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           R G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+
Sbjct: 181 RTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQ 220


>gi|288573280|ref|ZP_06391637.1| recA protein [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569021|gb|EFC90578.1| recA protein [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 386

 Score =  340 bits (871), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 164/314 (52%), Positives = 230/314 (73%), Gaps = 4/314 (1%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LE A+  I+  +G G+IM+LG        +EV+ +G L LD+ALGIGGFP+GRIVE++GP
Sbjct: 14  LEVAIDDIRSKFGDGSIMRLGDD--TLANVEVIPTGILPLDVALGIGGFPRGRIVEVFGP 71

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           E SGKTTLALH +A++QK GG  AF+DAEHALD   A+ LGV++ +L I+QPD+GEQAL 
Sbjct: 72  EGSGKTTLALHALAEAQKAGGVAAFIDAEHALDPRLAQSLGVNVADLYIAQPDSGEQALY 131

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I + LVRSGAVDI+V+DSVAALTP+AEI+G +G++  G+QARLMS +LR+LTS+IS+S  
Sbjct: 132 ILETLVRSGAVDIVVVDSVAALTPQAEIDGKIGDTQVGLQARLMSYSLRRLTSAISKSNS 191

Query: 196 ILVFINQMRMKI--GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
           I+VFINQ+R  I  G   G  ETTTGG ALKFY+SVR++++R  S+   D   G++  +K
Sbjct: 192 IVVFINQLRATISTGYSRGPSETTTGGRALKFYTSVRVEVKRGKSVTKGDDTIGHELWIK 251

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VVKNK A PF+     ++YG+GI      +D+ + A ++ + G+W ++KG+ LGQG++N 
Sbjct: 252 VVKNKQAPPFRTAHTTLVYGKGIPNNMSTVDMAIDAGVIKRKGSWLAYKGETLGQGKDNV 311

Query: 314 KIFLRENIEIAENI 327
             +L E+ ++ E I
Sbjct: 312 ANYLEEHPDLNEEI 325


>gi|157493227|gb|ABV57979.1| RecA [Vibrio cholerae]
          Length = 222

 Score =  340 bits (871), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 155/218 (71%), Positives = 192/218 (88%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 2   ISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+M
Sbjct: 62  DPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEM 121

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 122 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 181

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+
Sbjct: 182 SVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKE 219


>gi|302847104|ref|XP_002955087.1| hypothetical protein VOLCADRAFT_121385 [Volvox carteri f.
           nagariensis]
 gi|300259615|gb|EFJ43841.1| hypothetical protein VOLCADRAFT_121385 [Volvox carteri f.
           nagariensis]
          Length = 576

 Score =  339 bits (870), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 165/322 (51%), Positives = 224/322 (69%), Gaps = 3/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K+K     + +I R +G+  IM+L    S+   ++   SGSL LD ALG GG+P+GRI+E
Sbjct: 226 KAKLFNDTVDRIARRFGENTIMRLSE--SVSANVDTFPSGSLTLDAALG-GGYPRGRIIE 282

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPE+SGKTTLA+H  A+ Q+ GGT A++D EHA D  YA +LG++L++   SQP TGE
Sbjct: 283 VYGPEASGKTTLAMHACAEIQRLGGTVAYIDVEHAFDRTYAERLGINLESFWYSQPMTGE 342

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           +ALE+ D L RS   D++VIDSVAAL PRAE+EGD+G    G QARL+SQALRKL++S +
Sbjct: 343 EALEVMDELCRSNVCDLVVIDSVAALVPRAELEGDIGNVQIGSQARLLSQALRKLSASAA 402

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +SK  L FINQ+R KIGVMFG+PETT GG ALK+YSSVR+DIR+  ++   +   GN+ R
Sbjct: 403 KSKTTLFFINQLRNKIGVMFGNPETTAGGQALKYYSSVRIDIRKKETLTQGEQAYGNRVR 462

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
            KVVKNK+A P K+   +I YG GI F G L+D   +  ++++ GAW+     RLGQGRE
Sbjct: 463 AKVVKNKVAPPHKEAMLEIYYGRGIDFLGGLVDTAERLRVLNRKGAWYYMGEMRLGQGRE 522

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
                LRE+ +    IE+ +R+
Sbjct: 523 KMLQLLREDPDRCAAIENAVRE 544


>gi|293332481|ref|NP_001170211.1| hypothetical protein LOC100384162 [Zea mays]
 gi|224034357|gb|ACN36254.1| unknown [Zea mays]
          Length = 425

 Score =  339 bits (870), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 189/366 (51%), Positives = 255/366 (69%), Gaps = 17/366 (4%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLG-SQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           E N+  K  AL  A+ QI   +GKGAIM LG SQG     + VVS+GSL LD+ALG GG 
Sbjct: 56  EENMSKKDLALHQAIDQITSAFGKGAIMWLGRSQG--HRDVPVVSTGSLDLDMALGTGGL 113

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGR+VE+YGPE+SGKTTLALH IA++QK GG CAFVDAEHALD   A  +GVD  NLL+
Sbjct: 114 PKGRVVEVYGPEASGKTTLALHVIAEAQKNGGYCAFVDAEHALDPALAESIGVDTNNLLL 173

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD  EQAL + D L+RSG+VD++V+DSVAAL P+ E++G+MG++   +QARLMSQALR
Sbjct: 174 SQPDCAEQALSLVDTLIRSGSVDVVVVDSVAALVPKTELDGEMGDAHIALQARLMSQALR 233

Query: 185 KLTSSISRSKCILVFINQMRMKIGVM-FGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           KL+ S+S S+ IL+FINQ+R K+    FG P E T+GGNALKFY+SVRL+IRR+G +K  
Sbjct: 234 KLSHSLSLSQTILLFINQIRAKVATFGFGGPTEVTSGGNALKFYASVRLNIRRIGLVKKG 293

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS-GAWFSF 301
           +   G+Q  VK+VKNK A PFK  +F++ +G+GI    EL +LG+K  ++ KS G+++SF
Sbjct: 294 EETIGSQIAVKIVKNKHAPPFKTAQFELEFGKGICRSSELFELGLKHKLIRKSGGSYYSF 353

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLR----------QNAGLVADSLLQEPAINTK 351
            G+    G+ N K +L EN  +A ++E  L+          Q AG  + S   E ++  +
Sbjct: 354 NGKAF-NGKSNLKSYLTENKSVANDLEMELKRLMGTDASKEQEAGDSSQSDFPEESVTPE 412

Query: 352 DDADKD 357
             +++D
Sbjct: 413 ASSEED 418


>gi|89145042|emb|CAJ57529.1| recombinase A [Microbacterium phyllosphaerae]
          Length = 238

 Score =  339 bits (869), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 160/236 (67%), Positives = 193/236 (81%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL LH IA +Q+ GG  AF+DAEHALD  YA KLGVD+  LL+SQPDTGEQALEI DMLV
Sbjct: 1   TLTLHAIANAQRAGGIAAFIDAEHALDPDYAAKLGVDIDALLVSQPDTGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  ++++   ++FIN
Sbjct: 61  RSGAIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIFIN 120

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+R KIGV FGSPETT GG ALKFY+SVR+DIRR+ ++KD     GN+TRVKVVKNKMA 
Sbjct: 121 QLREKIGVFFGSPETTAGGKALKFYASVRMDIRRIETLKDGTDAVGNRTRVKVVKNKMAP 180

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317
           PFKQ EFDI+YG GIS  G LID GV+  IV KSG+W+++ G +LGQG+EN++ FL
Sbjct: 181 PFKQAEFDILYGVGISREGSLIDFGVEHGIVKKSGSWYTYDGDQLGQGKENARTFL 236


>gi|308171328|gb|ADO15983.1| RecA [Vibrio caribbenthicus]
          Length = 226

 Score =  338 bits (868), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 154/225 (68%), Positives = 194/225 (86%)

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTG
Sbjct: 1   EIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 60

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 61  EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 120

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T
Sbjct: 121 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 180

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           R+KVVKNK+A+PFK+    IMYG+G +  GEL+DLGVK  +V+K+
Sbjct: 181 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKA 225


>gi|89145175|emb|CAJ57523.1| recombinase A [Microbacterium lacticum]
          Length = 237

 Score =  338 bits (868), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 160/236 (67%), Positives = 194/236 (82%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL LH IA  Q+ GG  AFVDAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DMLV
Sbjct: 1   TLTLHAIANVQRAGGIAAFVDAEHALDPDYAQKLGVDIDQLLVSQPDTGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  ++++   ++FIN
Sbjct: 61  RSGAIDLVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTGTTMIFIN 120

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA 
Sbjct: 121 QLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKMAP 180

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317
           PFKQ EFDI+YG GIS  G LID GV+  +V KSGAW+++ G++LGQG+EN++ FL
Sbjct: 181 PFKQAEFDILYGVGISREGSLIDFGVEHGLVKKSGAWYTYDGEQLGQGKENARNFL 236


>gi|331703415|ref|YP_004400102.1| RecA protein (Recombinase A) [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|328801970|emb|CBW54124.1| RecA protein (Recombinase A) [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 345

 Score =  338 bits (867), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 171/326 (52%), Positives = 243/326 (74%), Gaps = 6/326 (1%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SK L+ A+ +I++++GKG+IM LG   ++   IE  SSGSL LD ALGIGG+PKGRI+EI
Sbjct: 22  SKELKEAIKEIEKMFGKGSIMVLGQSDNL--NIETFSSGSLLLDNALGIGGYPKGRIIEI 79

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL+LH I + QK GG  AF+DAEH+L+  Y + LG+D   LL+SQPD GEQ
Sbjct: 80  YGPESSGKTTLSLHAICEVQKLGGIAAFIDAEHSLEPKYCQTLGIDTNKLLVSQPDNGEQ 139

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           AL+I +ML+ S ++D+IV+DSVAAL P+ E++G+M +   G+QAR+MS+ALRKL   I++
Sbjct: 140 ALDILEMLINSNSIDLIVVDSVAALVPKTELDGEMSDQSIGLQARMMSKALRKLNGLIAK 199

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           S   ++FINQ+R KIGV+FG+PETTTGG ALKF+SS+RL++R+  +I +   I GN+ ++
Sbjct: 200 SNTTVIFINQLREKIGVIFGNPETTTGGKALKFFSSIRLEVRKAENILNNSEIIGNKIKI 259

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK A PFK     ++Y +GI   GEL+DL V   I++KSG W+S++ +++GQGR +
Sbjct: 260 KVVKNKTAIPFKTTTISLLYNKGIDKLGELVDLLVSYEIIEKSGVWYSYQNEKIGQGRTS 319

Query: 313 SKIFLR--EN--IEIAENIESLLRQN 334
              +L   EN   E+ E ++ L++Q+
Sbjct: 320 VIQWLNADENRINELTEQVKKLIKQD 345


>gi|32481312|gb|AAP84004.1| catalase [Vibrio cholerae]
          Length = 224

 Score =  338 bits (867), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 155/224 (69%), Positives = 192/224 (85%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE 281
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GE
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGE 224


>gi|1172887|sp|P42446|RECA_MYCMY RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|520363|gb|AAA20405.1| sequence derived from overlapping PCR products [Mycoplasma
           mycoides]
          Length = 345

 Score =  338 bits (866), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 171/326 (52%), Positives = 243/326 (74%), Gaps = 6/326 (1%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SK L+ A+ +I++++GKG+IM LG   ++   IE  SSGSL LD ALGIGG+PKGRI+EI
Sbjct: 22  SKELKEAIKEIEKMFGKGSIMVLGQSDNL--NIETFSSGSLLLDNALGIGGYPKGRIIEI 79

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL+LH I + QK GG  AF+DAEH+L+  Y + LG+D   LL+SQPD GEQ
Sbjct: 80  YGPESSGKTTLSLHAICEVQKLGGIAAFIDAEHSLEPKYCQTLGIDTNKLLVSQPDNGEQ 139

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           AL+I +ML+ S ++D+IV+DSVAAL P+ E++G+M +   G+QAR+MS+ALRKL   I++
Sbjct: 140 ALDILEMLINSNSIDLIVVDSVAALVPKTELDGEMSDQSIGLQARMMSKALRKLNWLIAK 199

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           S   ++FINQ+R KIGV+FG+PETTTGG ALKF+SS+RL++R+  +I +   I GN+ ++
Sbjct: 200 SNTTVIFINQLREKIGVIFGNPETTTGGKALKFFSSIRLEVRKAENILNNYEIIGNKIKI 259

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK A PFK     ++Y +GI   GEL+DL V   I++KSG W+S++ +++GQGR +
Sbjct: 260 KVVKNKTAIPFKTTTISLLYNKGIDKLGELVDLLVSYEIIEKSGVWYSYQNEKIGQGRTS 319

Query: 313 SKIFLR--EN--IEIAENIESLLRQN 334
              +L   EN   E+ E ++ L++Q+
Sbjct: 320 VIQWLNADENRINELTEQVKKLIKQD 345


>gi|224122482|ref|XP_002330492.1| predicted protein [Populus trichocarpa]
 gi|222872426|gb|EEF09557.1| predicted protein [Populus trichocarpa]
          Length = 357

 Score =  337 bits (864), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 178/324 (54%), Positives = 242/324 (74%), Gaps = 4/324 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K  AL+ AL QI   +GKG+IM  G +    + + VVS+GS  LDIALG GGFPKGR+VE
Sbjct: 3   KDLALQQALDQITSQFGKGSIMWFG-RSEAPKNVPVVSTGSFALDIALGCGGFPKGRVVE 61

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPE+SGKTTLALH IA++QK GG C F+DAEHALDS  A+ +GV+ +NLL+SQPD GE
Sbjct: 62  IFGPEASGKTTLALHVIAEAQKQGGYCVFMDAEHALDSSLAKAIGVNTENLLLSQPDCGE 121

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL + D L+RSG+VD++V+DSVAAL P++E++G+MG++   MQARLMSQALRKL+ S+S
Sbjct: 122 QALSLVDTLIRSGSVDVVVVDSVAALVPKSELDGEMGDAHMAMQARLMSQALRKLSHSLS 181

Query: 192 RSKCILVFINQMRMKIGVM-FGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +S+ +L+FINQ+R K+    FG P E T GGNALKFY+SVRL+IRRVG IK  +  TG Q
Sbjct: 182 QSQTVLIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIRRVGFIKKGEETTGTQ 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VK+ KNK+A PFK V+F++ +G+GIS   E+I+L VK   + K+GA++   G++   G
Sbjct: 242 VQVKIAKNKLAPPFKTVQFELEFGKGISRESEIIELAVKHKFIKKNGAFYDCNGRKY-HG 300

Query: 310 RENSKIFLRENIEIAENIESLLRQ 333
           +E  + FL  N ++ E +   LR+
Sbjct: 301 KEALREFLAHNDDVQEELMMKLRE 324


>gi|6694825|gb|AAF25410.1|AF214763_1 RecA protein [Arthrobacter sp. 'SMCC G962']
          Length = 237

 Score =  337 bits (864), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 159/237 (67%), Positives = 196/237 (82%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGV
Sbjct: 1   ALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHALDPEYAAKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           D   LL+SQPDTGEQALEI DML+ SG++D+IVIDSVAAL PRAEIEGDMG+S  G+QAR
Sbjct: 61  DTDALLVSQPDTGEQALEIMDMLIGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           LMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ 
Sbjct: 121 LMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQ 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK 294
           ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS  G +ID+GV+  I+ K
Sbjct: 181 TLKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQGISREGGIIDMGVEHGIIKK 237


>gi|290795145|gb|ADD64587.1| RecA recombinase [Vibrio splendidus]
          Length = 226

 Score =  337 bits (864), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 160/228 (70%), Positives = 195/228 (85%), Gaps = 2/228 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D
Sbjct: 59  IAAAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAID 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           GVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVV
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVV 226


>gi|89143235|emb|CAJ57512.1| recombinase A [Microbacterium chocolatum]
          Length = 236

 Score =  337 bits (863), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 158/233 (67%), Positives = 193/233 (82%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA  Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DMLVRSG
Sbjct: 2   LHAIANVQRAGGIAAFIDAEHALDPDYAQKLGVDIDALLVSQPDTGEQALEIADMLVRSG 61

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A+D++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  ++++   ++FINQ+R
Sbjct: 62  AIDLVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLR 121

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
            KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA PFK
Sbjct: 122 EKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKMAPPFK 181

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317
           Q EFDI+YG GIS  G LID GV+ +IV KSGAW+++ G++LGQG+EN++ FL
Sbjct: 182 QAEFDILYGVGISREGSLIDFGVEHAIVKKSGAWYTYDGEQLGQGKENARNFL 234


>gi|148879005|emb|CAM07018.1| RecA protein [Mycobacterium llatzerense]
          Length = 243

 Score =  336 bits (862), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 156/242 (64%), Positives = 198/242 (81%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD   LL+SQPDTGEQALEI DMLVR
Sbjct: 1   VALHAVANAQAAGGIAAFIDAEHALDPDYAQKLGVDTDALLVSQPDTGEQALEIADMLVR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +++ S    +FINQ
Sbjct: 61  SGAIDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQ 120

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+TR K+VKNK+A P
Sbjct: 121 LREKIGVMFGSPETTTGGKALKFYASVRIDVRRIETLKDGTDAVGNRTRAKIVKNKVAPP 180

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF++ G++LGQG+EN++ +L +N +
Sbjct: 181 FKQAEFDILYGKGISKEGSLIDMGVEHGFIRKSGSWFTYDGEQLGQGKENARNYLLQNPD 240

Query: 323 IA 324
            A
Sbjct: 241 AA 242


>gi|242059571|ref|XP_002458931.1| hypothetical protein SORBIDRAFT_03g042890 [Sorghum bicolor]
 gi|241930906|gb|EES04051.1| hypothetical protein SORBIDRAFT_03g042890 [Sorghum bicolor]
          Length = 427

 Score =  336 bits (862), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 182/332 (54%), Positives = 241/332 (72%), Gaps = 7/332 (2%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLG-SQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           E N+  K  AL  A+ QI   +GKGAIM LG SQG     + VVS+GS  LD+ALG GG 
Sbjct: 58  EENMSKKDLALHQAIDQITSAFGKGAIMWLGRSQG--HRDVPVVSTGSFALDMALGTGGL 115

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGR++E+YGPE+SGKTTLALH IA++QK GG CAFVDAEHALD   A K+GVD  NLL+
Sbjct: 116 PKGRVIEVYGPEASGKTTLALHVIAEAQKNGGYCAFVDAEHALDPALAEKIGVDTNNLLL 175

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD  EQAL + D L+RSG+VD++V+DSVAAL P+ E++G+MG++   +QARLMSQALR
Sbjct: 176 SQPDCAEQALSLVDTLIRSGSVDVVVVDSVAALVPKTELDGEMGDAHVALQARLMSQALR 235

Query: 185 KLTSSISRSKCILVFINQMRMKIGVM-FGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           KL+ S+S S+ IL+FINQ+R K+    FG P E T+GGNALKFY+SVRL+IRR+G +K  
Sbjct: 236 KLSHSLSLSQTILLFINQIRAKVATFGFGGPTEVTSGGNALKFYASVRLNIRRIGLVKKG 295

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS-GAWFSF 301
           +   G+Q  VK+VKNK A PFK  +F++ +G+GI    EL +LG+K  ++ K+ GA++SF
Sbjct: 296 EETIGSQIAVKIVKNKHAPPFKTAQFELEFGKGICRSSELFELGLKHKLIKKTGGAFYSF 355

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
                  G+ N K +L EN  +A ++E  LR+
Sbjct: 356 NDMSFC-GKNNLKSYLDENKSVANDLEMELRR 386


>gi|294155460|ref|YP_003559844.1| Recombinase protein RecA [Mycoplasma crocodyli MP145]
 gi|291600107|gb|ADE19603.1| Recombinase protein RecA [Mycoplasma crocodyli MP145]
          Length = 327

 Score =  336 bits (861), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 155/317 (48%), Positives = 236/317 (74%), Gaps = 2/317 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K+  ++ AL+ I + +GK +IM LGS   +   I+  SSGS  L+  LG+GGFPKGRI+
Sbjct: 6   EKNIIIKEALNAIGKKFGKESIMLLGSVTDV--TIDTFSSGSHSLNKILGVGGFPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ LH IA+ QK GG  AF+DAEH++D  YA  +GV +  L++SQPD+G
Sbjct: 64  EIYGPESSGKTTVCLHAIAEIQKKGGLAAFIDAEHSIDPNYASNIGVKVDELILSQPDSG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D+L RSG +D+IV+DSVAAL P AE++G+M +   G QARLMS+ALRK+  ++
Sbjct: 124 EQALEIVDLLARSGNIDLIVVDSVAALVPEAELQGEMKDQQIGTQARLMSKALRKIAGTL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K  ++F+NQ+R K+GV+FG+PETT+GG ALKFY+S+R+++R+  +I D   I GN+ 
Sbjct: 184 NKNKTTVIFVNQIREKVGVIFGNPETTSGGRALKFYASIRVEVRKGANISDSKDIVGNEI 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           + KVVKNK+A+P+K    +I++  GI+   ELIDL ++A+++ K G+W+S   + + QG 
Sbjct: 244 KFKVVKNKLAAPYKSATSEIIFSRGINATKELIDLAIEANLISKKGSWYSIDDKNVAQGE 303

Query: 311 ENSKIFLRENIEIAENI 327
           ++ + ++ +NI++  ++
Sbjct: 304 KSLEAYIEDNIDLKNDL 320


>gi|269793250|ref|YP_003318154.1| recA protein [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100885|gb|ACZ19872.1| recA protein [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 377

 Score =  335 bits (860), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 167/326 (51%), Positives = 234/326 (71%), Gaps = 5/326 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K    + +   LE A+ +I+  +G+GAIM+LG +      +EV+ +G L LD+ALGIGG 
Sbjct: 3   KRREALTREDVLEQAIDEIRSKFGEGAIMRLGDRA--LGQVEVIPTGILPLDVALGIGGL 60

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GRIVEI+GPE +GKTT+ALH +A++QK GG  AF+DAEHALD   A  LGVD+++L +
Sbjct: 61  PRGRIVEIFGPEGTGKTTIALHAVAEAQKAGGVAAFIDAEHALDPRLASALGVDIESLYL 120

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQAL 183
           SQPD+GEQAL I D LVRSGAVDIIV+DSVAALTP+AEI+G MGE S  G+QARLMS AL
Sbjct: 121 SQPDSGEQALYILDTLVRSGAVDIIVVDSVAALTPQAEIDGKMGEGSQVGLQARLMSYAL 180

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMF--GSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           R+LT++IS+SK  +VFINQ+R +I   +  G  ETTTGG ALKFYSSVR++++R  ++  
Sbjct: 181 RRLTAAISKSKTTVVFINQLRAQISTGYGQGPQETTTGGRALKFYSSVRVEVKRGKAVSQ 240

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            +   G++  +KVVKNK A PF+     ++YG+G+     ++D+ +   +V + G+W ++
Sbjct: 241 GEETIGHELWMKVVKNKQAPPFRSAHATLIYGKGVPRAMAVLDMALDYEVVKRKGSWLAY 300

Query: 302 KGQRLGQGRENSKIFLRENIEIAENI 327
           KG+ L QG+E +   L E+ E+ E I
Sbjct: 301 KGETLAQGKEGTAQHLMEHPELMEEI 326


>gi|158263163|gb|ABW24358.1| RecA [Streptococcus uberis]
          Length = 251

 Score =  335 bits (860), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 162/245 (66%), Positives = 201/245 (82%), Gaps = 4/245 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KDS  G +T++KVVKNK+A PFK  E +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTG 240

Query: 281 ELIDL 285
           ELI +
Sbjct: 241 ELIKI 245


>gi|219870182|gb|ACL50296.1| RecA protein [Pseudomonas chlororaphis subsp. aurantiaca]
          Length = 222

 Score =  335 bits (860), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 156/222 (70%), Positives = 190/222 (85%)

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEIT
Sbjct: 1   SGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEIT 60

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           DMLVRS A+D+IVIDSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C++
Sbjct: 61  DMLVRSNAIDVIVIDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLV 120

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           +FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVK+VKN
Sbjct: 121 IFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKIVKN 180

Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           K+A PF+Q EF I+YG+GI   GE+IDLGV    ++KSGAW+
Sbjct: 181 KVAPPFRQAEFQILYGKGIYLNGEIIDLGVLHGFLEKSGAWY 222


>gi|11244969|gb|AAG33386.1| RecA protein [Vibrio parahaemolyticus]
          Length = 232

 Score =  335 bits (860), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 154/220 (70%), Positives = 189/220 (85%)

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSG TTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQP
Sbjct: 11  RIVEIYGPESSGXTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQP 70

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT
Sbjct: 71  DTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLT 130

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + G
Sbjct: 131 GNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVG 190

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           N+TR+KVVKNK+A+PFK+    IMYG+G    GELIDLGV
Sbjct: 191 NETRIKVVKNKIAAPFKEANTQIMYGQGFXRXGELIDLGV 230


>gi|158263017|gb|ABW24285.1| RecA [Streptococcus canis]
 gi|158263025|gb|ABW24289.1| RecA [Streptococcus dysgalactiae subsp. dysgalactiae]
 gi|158263027|gb|ABW24290.1| RecA [Streptococcus dysgalactiae subsp. equisimilis]
 gi|158263147|gb|ABW24350.1| RecA [Streptococcus pyogenes]
          Length = 251

 Score =  335 bits (860), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 160/245 (65%), Positives = 201/245 (82%), Gaps = 4/245 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KDS  G +T++KVVKNK+A PFK  E +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGTTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTG 240

Query: 281 ELIDL 285
           EL+ +
Sbjct: 241 ELVKI 245


>gi|158263157|gb|ABW24355.1| RecA [Streptococcus sobrinus]
          Length = 251

 Score =  335 bits (859), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 160/245 (65%), Positives = 202/245 (82%), Gaps = 4/245 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG+GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGVGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGVAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FYSSVRLD+R    IK     KDS  G +T++KVVKNK+A PFK  + +IMYGEGIS  G
Sbjct: 181 FYSSVRLDVRGNTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAQVEIMYGEGISRTG 240

Query: 281 ELIDL 285
           EL+ +
Sbjct: 241 ELVKI 245


>gi|4191779|gb|AAD10148.1| putative recA protein [Arabidopsis thaliana]
          Length = 376

 Score =  335 bits (859), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 174/312 (55%), Positives = 233/312 (74%), Gaps = 5/312 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K  AL+ AL QI   +GKG+IM LG   S    + V S+GS  LD+ALG+GG PKGR+VE
Sbjct: 4   KEIALQQALDQITSSFGKGSIMYLGRAVSP-RNVPVFSTGSFALDVALGVGGLPKGRVVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPE+SGKTTLALH IA++QK GGTC FVDAEHALDS  A+ +GV+ +NLL+SQPD GE
Sbjct: 63  IYGPEASGKTTLALHVIAEAQKQGGTCVFVDAEHALDSSLAKAIGVNTENLLLSQPDCGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL + D L+RSG+VD+IV+DSVAAL P+ E+EG+MG++   MQARLMSQALRKL+ S+S
Sbjct: 123 QALSLVDTLIRSGSVDVIVVDSVAALVPKGELEGEMGDAHMAMQARLMSQALRKLSHSLS 182

Query: 192 RSKCILVFINQMRMKIGVM--FGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            S+ +L+FINQ+R K+     FG P E T GGNALKFY+S+RL+I+R+G IK  +  TG+
Sbjct: 183 LSQTLLIFINQVRSKLSTFGGFGGPTEVTCGGNALKFYASMRLNIKRIGLIKKGEETTGS 242

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           Q  VK+VKNK+A PF+  +F++ +G+GI    E+IDL +K   + K+G +++  G+    
Sbjct: 243 QVSVKIVKNKLAPPFRTAQFELEFGKGICKITEIIDLSIKHKFIAKNGTFYNLNGKNY-H 301

Query: 309 GRENSKIFLREN 320
           G+E  K FL++N
Sbjct: 302 GKEALKRFLKQN 313


>gi|212274305|ref|NP_001130273.1| hypothetical protein LOC100191367 [Zea mays]
 gi|194688718|gb|ACF78443.1| unknown [Zea mays]
          Length = 430

 Score =  335 bits (859), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 180/338 (53%), Positives = 244/338 (72%), Gaps = 7/338 (2%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLG-SQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           E ++  K  AL  A+ QI   +GKGAIM LG SQG     + VVS+GS  LD+ALG GG 
Sbjct: 61  EESMSKKDLALHQAIDQITSAFGKGAIMWLGRSQG--LRDVPVVSTGSFALDMALGTGGL 118

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGR++E+YGPE+SGKTTLALH IA++QK GG CAFVDAEHALD   A  +GVD  NLL+
Sbjct: 119 PKGRVIEVYGPEASGKTTLALHVIAEAQKNGGYCAFVDAEHALDPALAESIGVDTNNLLV 178

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD  EQAL + D L+RSG+VD++V+DSVAAL P+ E++G+MG++   +QARLMSQALR
Sbjct: 179 SQPDCAEQALSLVDTLIRSGSVDVVVVDSVAALVPKTELDGEMGDAHVALQARLMSQALR 238

Query: 185 KLTSSISRSKCILVFINQMRMKIGVM-FGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           KL+ S+S S+ +L+FINQ+R K+    FG P E T+GGNALKFY+SVRL+IRR+G +K+ 
Sbjct: 239 KLSHSLSLSQTVLLFINQIRAKVATFGFGGPTEVTSGGNALKFYASVRLNIRRIGFLKEG 298

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS-GAWFSF 301
           +   G+Q  VK+VKNK A PFK  +F++ +G+GI    EL +LG+K  ++ K+ GA++ F
Sbjct: 299 EETIGSQVAVKIVKNKHAPPFKTAQFELEFGKGICRSSELFELGLKHKLIQKTGGAYYRF 358

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
                 +G+ N K +L EN  +A ++E+ LR+  G  A
Sbjct: 359 NDMSF-KGKNNLKSYLTENKSVANDLETKLRRLMGTEA 395


>gi|158263049|gb|ABW24301.1| RecA [Streptococcus iniae]
          Length = 251

 Score =  335 bits (859), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 161/245 (65%), Positives = 201/245 (82%), Gaps = 4/245 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAASLGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FYSSVRLD+R    IK     KDS  G +T++KVVKNK+A PFK  E +IMYGEGIS  G
Sbjct: 181 FYSSVRLDVRGNTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTG 240

Query: 281 ELIDL 285
           EL+ +
Sbjct: 241 ELVKI 245


>gi|6694816|gb|AAF25401.1|AF214754_1 RecA protein [Arthrobacter sp. 'SMCC ZAT262']
          Length = 234

 Score =  335 bits (859), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 156/227 (68%), Positives = 191/227 (84%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  
Sbjct: 2   GSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHALDPE 61

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA KLGVD   LL+SQPDTGEQALEI DML+ SG++D+IVIDSVAAL PRAEIEGDMG+S
Sbjct: 62  YAAKLGVDTDALLVSQPDTGEQALEIMDMLIGSGSLDVIVIDSVAALVPRAEIEGDMGDS 121

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
             G+QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R
Sbjct: 122 HVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIR 181

Query: 231 LDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277
           +D+RR+ ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS
Sbjct: 182 IDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQGIS 228


>gi|42569151|ref|NP_179539.2| recA family protein [Arabidopsis thaliana]
 gi|209572665|sp|Q9ZUP2|RECA3_ARATH RecName: Full=DNA repair protein recA homolog 3, mitochondrial;
           AltName: Full=Recombinase A homolog 3; Flags: Precursor
 gi|119935859|gb|ABM06015.1| At2g19490 [Arabidopsis thaliana]
 gi|330251794|gb|AEC06888.1| DNA repair protein recA-like 3 [Arabidopsis thaliana]
          Length = 430

 Score =  335 bits (859), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 175/318 (55%), Positives = 235/318 (73%), Gaps = 5/318 (1%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E  +  K  AL+ AL QI   +GKG+IM LG   S    + V S+GS  LD+ALG+GG P
Sbjct: 52  EEGMSKKEIALQQALDQITSSFGKGSIMYLGRAVSP-RNVPVFSTGSFALDVALGVGGLP 110

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR+VEIYGPE+SGKTTLALH IA++QK GGTC FVDAEHALDS  A+ +GV+ +NLL+S
Sbjct: 111 KGRVVEIYGPEASGKTTLALHVIAEAQKQGGTCVFVDAEHALDSSLAKAIGVNTENLLLS 170

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQAL + D L+RSG+VD+IV+DSVAAL P+ E+EG+MG++   MQARLMSQALRK
Sbjct: 171 QPDCGEQALSLVDTLIRSGSVDVIVVDSVAALVPKGELEGEMGDAHMAMQARLMSQALRK 230

Query: 186 LTSSISRSKCILVFINQMRMKIGVM--FGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           L+ S+S S+ +L+FINQ+R K+     FG P E T GGNALKFY+S+RL+I+R+G IK  
Sbjct: 231 LSHSLSLSQTLLIFINQVRSKLSTFGGFGGPTEVTCGGNALKFYASMRLNIKRIGLIKKG 290

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           +  TG+Q  VK+VKNK+A PF+  +F++ +G+GI    E+IDL +K   + K+G +++  
Sbjct: 291 EETTGSQVSVKIVKNKLAPPFRTAQFELEFGKGICKITEIIDLSIKHKFIAKNGTFYNLN 350

Query: 303 GQRLGQGRENSKIFLREN 320
           G+    G+E  K FL++N
Sbjct: 351 GKNY-HGKEALKRFLKQN 367


>gi|158263043|gb|ABW24298.1| RecA [Streptococcus infantarius subsp. infantarius ATCC BAA-102]
 gi|158263045|gb|ABW24299.1| RecA [Streptococcus lutetiensis]
          Length = 251

 Score =  335 bits (858), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 161/245 (65%), Positives = 201/245 (82%), Gaps = 4/245 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G++  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDNHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FYSSVRLD+R    IK     KDS  G +T++KVVKNK+A PFK  E +IMYGEGIS  G
Sbjct: 181 FYSSVRLDVRGNTQIKGTGDQKDSNIGKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTG 240

Query: 281 ELIDL 285
           ELI +
Sbjct: 241 ELIKI 245


>gi|158263101|gb|ABW24327.1| RecA [Streptococcus parauberis]
          Length = 251

 Score =  335 bits (858), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 161/245 (65%), Positives = 201/245 (82%), Gaps = 4/245 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+
Sbjct: 61  HALDPAYAASLGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KDS  G +T++KVVKNK+A PFK  E +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDQKDSSIGKETKIKVVKNKIAPPFKVAEVEIMYGEGISRTG 240

Query: 281 ELIDL 285
           EL+ +
Sbjct: 241 ELVKI 245


>gi|158263029|gb|ABW24291.1| RecA [Streptococcus equi subsp. equi]
 gi|158263031|gb|ABW24292.1| RecA [Streptococcus equi subsp. zooepidemicus]
          Length = 251

 Score =  335 bits (858), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 160/245 (65%), Positives = 201/245 (82%), Gaps = 4/245 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G++  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDNHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KDS  G +T++KVVKNK+A PFK  E +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGTTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTG 240

Query: 281 ELIDL 285
           ELI +
Sbjct: 241 ELIKI 245


>gi|156902068|gb|ABU96827.1| RecA protein [Vibrio cholerae]
          Length = 221

 Score =  334 bits (857), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 153/221 (69%), Positives = 190/221 (85%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  L
Sbjct: 1   GLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDEL 60

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           L+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA
Sbjct: 61  LVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQA 120

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           +RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ 
Sbjct: 121 MRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEG 180

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELI
Sbjct: 181 EEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELI 221


>gi|158263023|gb|ABW24288.1| RecA [Streptococcus downei MFe28]
          Length = 251

 Score =  334 bits (857), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 160/245 (65%), Positives = 202/245 (82%), Gaps = 4/245 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG+GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGVGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPSYAVALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FYSSVRLD+R    IK     KDS  G +T++KVVKNK+A PFK  + +IMYGEGIS  G
Sbjct: 181 FYSSVRLDVRGNTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAQVEIMYGEGISRTG 240

Query: 281 ELIDL 285
           EL+ +
Sbjct: 241 ELVKI 245


>gi|158263149|gb|ABW24351.1| RecA [Streptococcus ratti]
          Length = 251

 Score =  334 bits (857), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 163/251 (64%), Positives = 204/251 (81%), Gaps = 8/251 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRIVEIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIVEIYGPESSGKTTVALHAVAQAQKDGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGQLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KDS  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDQKDSNIGKETKIKVVKNKVAPPFKEAFVEIMYGEGISRTG 240

Query: 281 ELI----DLGV 287
           EL+    DLG+
Sbjct: 241 ELVKIASDLGI 251


>gi|321531592|gb|ADW94626.1| RecA protein [Deinococcus radiopugnans ATCC 19172]
          Length = 342

 Score =  334 bits (856), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 174/340 (51%), Positives = 249/340 (73%), Gaps = 6/340 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ A+ QI++  GKG++M+LG++  +   ++ + +GSL LD+ALG+GG PKGR+ 
Sbjct: 4   EQQKALQTAMMQIEKQLGKGSMMKLGAETKLE--VQAIWTGSLSLDVALGVGGIPKGRVT 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPES GKTT+AL  +AQ+Q  GGTCAF+DAEHAL    AR LGV+   LL+SQPD G
Sbjct: 62  EIYGPESGGKTTVALSVVAQAQNAGGTCAFIDAEHALFPGVARPLGVNTNELLVSQPDNG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           +Q LEI D+LV SGA+D++V+DSVAALTPRAE++G+MG SLPG+QARLMSQALRKLT+ +
Sbjct: 122 DQLLEIMDLLVHSGAIDVVVVDSVAALTPRAEMDGEMG-SLPGLQARLMSQALRKLTAIL 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQ 249
           S++    + INQ+R  +GVM+G PETTTGG ALK Y+SVRLD+R++G   K  +      
Sbjct: 181 SKTGTAAMLINQVRENMGVMYGKPETTTGGRALKLYASVRLDVRKMGQPTKVGNDAVAKT 240

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            ++K VKNK+A+P K+VE  ++YG+G+    +L+DL     I+ K+G+++S+  +R+GQG
Sbjct: 241 VKMKTVKNKVAAPLKEVELALVYGKGLDQLSDLVDLAADMDIIKKAGSFYSYGDERMGQG 300

Query: 310 RENSKIFLRENIEIAENI-ESLLRQNAGLVADSLLQEPAI 348
           +E +  FL E  ++  +I E +L Q  G    + L EPA+
Sbjct: 301 KEKAMAFLSERPDLLADIRERVLAQMRG-TPVAPLPEPAL 339


>gi|134122758|dbj|BAF49677.1| RecA [Physcomitrella patens]
          Length = 435

 Score =  334 bits (856), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 184/364 (50%), Positives = 248/364 (68%), Gaps = 20/364 (5%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K   ++AA+ QI + +GK  +M LG +   F  I+VV +GSL LDIALG+GG PKGR+VE
Sbjct: 77  KQSLIQAAIDQIAKKHGKETVMWLGRESRDF--IDVVPTGSLNLDIALGVGGLPKGRVVE 134

Query: 72  IYGPESSGKTTLALHTIAQSQKTG-GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           I+G E+SGKTT+ALH IAQ+QK G G C FVDAEHALD  +A  +GV+ K+LL  QPD  
Sbjct: 135 IFGQEASGKTTIALHVIAQAQKMGKGHCLFVDAEHALDMQFAEGIGVNTKDLLFVQPDYA 194

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL+  D  VRS  VD+IV+DSVAAL P+AE+EGDMG+S   +QARLMS+ALR+LT S+
Sbjct: 195 EQALDTVDHFVRSTGVDVIVVDSVAALVPKAELEGDMGDSQMALQARLMSKALRRLTHSL 254

Query: 191 SRSKCILVFINQMRMKIGVMFG---SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           + S C+L+FINQ R K+    G   + E T GGNALKFY+SVRL +R+   ++  D   G
Sbjct: 255 NSSNCLLIFINQTRAKLNTYGGGGPTAEVTAGGNALKFYASVRLQVRKKEQLRRGDVPFG 314

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           +   VKVVKNK++ PF+  EFDI YG+GIS  GE++DLGVK  ++ +SG+W+S++G+   
Sbjct: 315 SSVIVKVVKNKVSPPFRTAEFDIEYGKGISRDGEVLDLGVKHGLLGQSGSWYSYEGKNFA 374

Query: 308 QGRENSKIFLREN--------IEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
            GRE +K +L+E+        + I E I    R +  L  D  +QE      +DA + D 
Sbjct: 375 NGREGAKKYLQEHTDLTDALVVAIKEKILGQPRASGDLDDDGFIQE------EDAFEADA 428

Query: 360 DNVE 363
           DN+E
Sbjct: 429 DNLE 432


>gi|158263015|gb|ABW24284.1| RecA [Streptococcus equinus]
          Length = 251

 Score =  334 bits (856), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 160/245 (65%), Positives = 201/245 (82%), Gaps = 4/245 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+S+GSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSTGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G++  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDNHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FYSSVRLD+R    IK     KDS  G +T++KVVKNK+A PFK  E +IMYGEGIS  G
Sbjct: 181 FYSSVRLDVRGNTQIKGTGDQKDSNIGKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTG 240

Query: 281 ELIDL 285
           ELI +
Sbjct: 241 ELIKI 245


>gi|158263021|gb|ABW24287.1| RecA [Streptococcus criceti]
          Length = 251

 Score =  333 bits (855), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 159/245 (64%), Positives = 202/245 (82%), Gaps = 4/245 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG+GG+PKGRI+EIYGPESSGKTT+ALH ++Q+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGVGGYPKGRIIEIYGPESSGKTTVALHAVSQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FYSSVRLD+R    IK     KDS  G +T++KVVKNK+A PFK  + +IMYGEGIS  G
Sbjct: 181 FYSSVRLDVRGNTQIKGTGEQKDSSIGKETKIKVVKNKVAPPFKVAQVEIMYGEGISQTG 240

Query: 281 ELIDL 285
           EL+ +
Sbjct: 241 ELVKI 245


>gi|158263153|gb|ABW24353.1| RecA [Streptococcus sanguinis]
          Length = 251

 Score =  333 bits (855), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 160/245 (65%), Positives = 202/245 (82%), Gaps = 4/245 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK    DKD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDDKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTG 240

Query: 281 ELIDL 285
           ELI +
Sbjct: 241 ELIKI 245


>gi|158263035|gb|ABW24294.1| RecA [Streptococcus gallolyticus subsp. gallolyticus]
 gi|158263039|gb|ABW24296.1| RecA [Streptococcus pasteurianus]
          Length = 251

 Score =  333 bits (855), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 159/245 (64%), Positives = 201/245 (82%), Gaps = 4/245 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G++  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDNHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KDS  G +T++KVVKNK+A PFK  E +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGSGDQKDSNIGKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTG 240

Query: 281 ELIDL 285
           EL+ +
Sbjct: 241 ELVKI 245


>gi|282897095|ref|ZP_06305097.1| RecA DNA recombination protein [Raphidiopsis brookii D9]
 gi|281197747|gb|EFA72641.1| RecA DNA recombination protein [Raphidiopsis brookii D9]
          Length = 258

 Score =  333 bits (854), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 164/252 (65%), Positives = 200/252 (79%), Gaps = 3/252 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL   L+QI+R +GKGAIM+LG    +   +E +S+G+L LD+ALG GG PKGR++E
Sbjct: 10  KQKALSMVLNQIERSFGKGAIMRLGDATRMR--VETISTGALTLDLALG-GGLPKGRVIE 66

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH IA+ Q+ GG  AFVDAEHALD  YA  LGVD++NLL+SQPDTGE
Sbjct: 67  IYGPESSGKTTVALHAIAEVQRNGGIAAFVDAEHALDPTYAGALGVDIENLLVSQPDTGE 126

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
             LEI D LVRS AVDI+VIDSVAAL PRAEIEGDMG++  G+QARLMSQALRK+T +I 
Sbjct: 127 AGLEIVDQLVRSAAVDIVVIDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKITGNIG 186

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S C ++FINQ+R KIGV +GSPETTTGGNALKFY+SVRLDIRR+ ++K      GN+ +
Sbjct: 187 KSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGSDEFGNRVK 246

Query: 252 VKVVKNKMASPF 263
           VKV KNK  +  
Sbjct: 247 VKVAKNKSCTTL 258


>gi|225620037|ref|YP_002721294.1| recombinase A [Brachyspira hyodysenteriae WA1]
 gi|225214856|gb|ACN83590.1| recombinase A [Brachyspira hyodysenteriae WA1]
          Length = 435

 Score =  333 bits (854), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 173/325 (53%), Positives = 238/325 (73%), Gaps = 5/325 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KS+A+EA   QI + YG G+ M+LGS  ++   ++V+S+G+L LD ALG+GG P+GRI+E
Sbjct: 24  KSEAIEAITDQINKKYGPGSFMRLGSNKTV--NVDVISTGALTLDHALGVGGVPRGRIIE 81

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYG E+SGKTTL LH IA++QK GG  AF+DAEHALD +YA  LGVD+ NL ISQP++GE
Sbjct: 82  IYGHEASGKTTLTLHIIAEAQKAGGYAAFIDAEHALDPVYASALGVDIDNLYISQPNSGE 141

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           +ALEI + +V S A DI+V+DSVAAL  +AE+ GD+G++   +QARLMS ALRKLT+ IS
Sbjct: 142 EALEILEKVVSSTAFDIVVVDSVAALVSKAELAGDIGDAHIALQARLMSHALRKLTAIIS 201

Query: 192 RSKCILVFINQMRMKI---GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            +   ++FINQ+R  I   G   G  ETTTGG ALKFYSSVRLDIRR   IK  D   G+
Sbjct: 202 NTNTAVIFINQLRQNIATTGYGAGPTETTTGGKALKFYSSVRLDIRRTEWIKKGDDTIGH 261

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + ++KVVKNK++SPFK V  +I++G+GIS  G LIDL ++A I+ +SGAWF + G+++ Q
Sbjct: 262 KVKIKVVKNKLSSPFKVVNLEIIFGKGISSEGLLIDLAMEAKIITRSGAWFYYNGEQIAQ 321

Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333
           G+E  +  L  + ++   +E  +R+
Sbjct: 322 GKEKVRELLASDPKMRMELEIQIRE 346


>gi|158263105|gb|ABW24329.1| RecA [Streptococcus pluranimalium]
          Length = 251

 Score =  333 bits (854), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 159/245 (64%), Positives = 202/245 (82%), Gaps = 4/245 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+ LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPMYAQALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FYSSVRLD+R    IK     KD   G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYSSVRLDVRGNTQIKGTGDKKDQNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISRTG 240

Query: 281 ELIDL 285
           EL+ +
Sbjct: 241 ELVKI 245


>gi|158263011|gb|ABW24282.1| RecA [Streptococcus anginosus SK52]
 gi|158263019|gb|ABW24286.1| RecA [Streptococcus constellatus subsp. constellatus]
 gi|158263051|gb|ABW24302.1| RecA [Streptococcus intermedius]
          Length = 251

 Score =  333 bits (854), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 159/245 (64%), Positives = 203/245 (82%), Gaps = 4/245 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA+ LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+
Sbjct: 61  HALDPAYAQALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+G+MFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK    +KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDEKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTG 240

Query: 281 ELIDL 285
           ELI +
Sbjct: 241 ELIKI 245


>gi|296127416|ref|YP_003634668.1| recA protein [Brachyspira murdochii DSM 12563]
 gi|296019232|gb|ADG72469.1| recA protein [Brachyspira murdochii DSM 12563]
          Length = 428

 Score =  333 bits (854), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 173/325 (53%), Positives = 238/325 (73%), Gaps = 5/325 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KS+A+EA   QI + YG G+ M+LGS  ++   ++V+S+G+L LD ALG+GG P+GRI+E
Sbjct: 16  KSEAIEAITDQINKKYGPGSFMRLGSNKTV--NVDVISTGALTLDHALGVGGVPRGRIIE 73

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYG E+SGKTTL LH IA++QK GG  AF+DAEHALD +YA  LGVD+ NL ISQP++GE
Sbjct: 74  IYGHEASGKTTLTLHIIAEAQKAGGYAAFIDAEHALDPVYASALGVDIDNLYISQPNSGE 133

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           +ALEI + +V S A DI+V+DSVAAL  +AE+ GD+G++   +QARLMS ALRKLT+ IS
Sbjct: 134 EALEILEKVVSSTAFDIVVVDSVAALVSKAELAGDIGDAHIALQARLMSHALRKLTAIIS 193

Query: 192 RSKCILVFINQMRMKI---GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            +   ++FINQ+R  I   G   G  ETTTGG ALKFYSSVRLDIRR   IK  D   G+
Sbjct: 194 NTNTAVIFINQLRQNIATTGYGAGPTETTTGGKALKFYSSVRLDIRRTEWIKKGDETIGH 253

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + ++KVVKNK++SPFK V  +I++G+GIS  G LIDL ++A I+ +SGAWF + G+++ Q
Sbjct: 254 KVKIKVVKNKLSSPFKVVNLEIIFGKGISSEGLLIDLAMEAKIITRSGAWFYYNGEQIAQ 313

Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333
           G+E  +  L  + ++   +E  +R+
Sbjct: 314 GKEKVRELLASDPKMRMELEIQIRE 338


>gi|306517561|emb|CBO93073.1| DNA recombinase A [Pantoea ananatis]
          Length = 220

 Score =  333 bits (854), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 155/215 (72%), Positives = 189/215 (87%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GSL LDIALG GG P GRIVEIYGPE+SGKTTL L  IA +Q+ G TCAF+DAEHALD 
Sbjct: 4   TGSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIAAAQRKGKTCAFIDAEHALDP 63

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+
Sbjct: 64  IYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGD 123

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SV
Sbjct: 124 SHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASV 183

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           RLDIRR+G+IK+ D++ G++TRVKVVKNK+A+PFK
Sbjct: 184 RLDIRRIGAIKEGDNVVGSETRVKVVKNKIAAPFK 218


>gi|315021913|gb|ADT70824.1| recombinase A [Pectobacterium carotovorum]
          Length = 229

 Score =  333 bits (853), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 159/231 (68%), Positives = 196/231 (84%), Gaps = 2/231 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKV 229


>gi|195638478|gb|ACG38707.1| DNA repair protein recA [Zea mays]
          Length = 430

 Score =  332 bits (852), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 179/338 (52%), Positives = 243/338 (71%), Gaps = 7/338 (2%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLG-SQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           E ++  K  AL  A+ QI   +GKGAIM LG SQG     + VVS+GS  LD+ALG GG 
Sbjct: 61  EESMSKKDLALHQAIDQITSAFGKGAIMWLGRSQG--LRDVPVVSTGSFALDMALGTGGL 118

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGR++E+YGPE+SGKTTLALH IA++QK GG CAFVDAEHALD   A  + VD  NLL+
Sbjct: 119 PKGRVIEVYGPEASGKTTLALHVIAEAQKNGGYCAFVDAEHALDPALAESIXVDTNNLLV 178

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD  EQAL + D L+RSG+VD++V+DSVAAL P+ E++G+MG++   +QARLMSQALR
Sbjct: 179 SQPDCAEQALSLVDTLIRSGSVDVVVVDSVAALVPKTELDGEMGDAHVALQARLMSQALR 238

Query: 185 KLTSSISRSKCILVFINQMRMKIGVM-FGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           KL+ S+S S+ +L+FINQ+R K+    FG P E T+GGNALKFY+SVRL+IRR+G +K+ 
Sbjct: 239 KLSHSLSLSQTVLLFINQIRAKVATFGFGGPTEVTSGGNALKFYASVRLNIRRIGFLKEG 298

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS-GAWFSF 301
           +   G+Q  VK+VKNK A PFK  +F++ +G+GI    EL +LG+K  ++ K+ GA++ F
Sbjct: 299 EETIGSQVAVKIVKNKHAPPFKTAQFELEFGKGICRSSELFELGLKHKLIQKTGGAYYRF 358

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
                 +G+ N K +L EN  +A ++E+ LR+  G  A
Sbjct: 359 NDMSF-KGKNNLKSYLTENKSVANDLETKLRRLMGTEA 395


>gi|158263155|gb|ABW24354.1| RecA [Streptococcus sinensis]
          Length = 251

 Score =  332 bits (852), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 160/245 (65%), Positives = 202/245 (82%), Gaps = 4/245 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+
Sbjct: 61  HALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK    +KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDEKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTG 240

Query: 281 ELIDL 285
           ELI +
Sbjct: 241 ELIKI 245


>gi|300871501|ref|YP_003786374.1| recA protein [Brachyspira pilosicoli 95/1000]
 gi|300689202|gb|ADK31873.1| recA protein [Brachyspira pilosicoli 95/1000]
          Length = 396

 Score =  332 bits (852), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 173/325 (53%), Positives = 238/325 (73%), Gaps = 5/325 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KS+A+EA   QI + YG G+ M+LGS  ++   ++V+S+G+L LD ALG+GG P+GRI+E
Sbjct: 16  KSEAIEAITDQINKKYGPGSFMRLGSNKTV--NVDVISTGALTLDHALGVGGVPRGRIIE 73

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYG E+SGKTTL LH IA++QK GG  AF+DAEHALD +YA  LGVD+ NL ISQP++GE
Sbjct: 74  IYGHEASGKTTLTLHIIAEAQKAGGYAAFIDAEHALDPVYASALGVDIDNLYISQPNSGE 133

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           +ALEI + +V S A DI+V+DSVAAL  +AE+ GD+G++   +QARLMS ALRKLT+ IS
Sbjct: 134 EALEILEKVVSSTAFDIVVVDSVAALVSKAELAGDIGDAHIALQARLMSHALRKLTAIIS 193

Query: 192 RSKCILVFINQMRMKI---GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            +   ++FINQ+R  I   G   G  ETTTGG ALKFYSSVRLDIRR   IK  D   G+
Sbjct: 194 NTNTAVIFINQLRQNIATTGYGAGPTETTTGGKALKFYSSVRLDIRRTEWIKKGDDTIGH 253

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + ++KVVKNK++SPFK V  +I++G+GIS  G LIDL ++A I+ +SGAWF + G+++ Q
Sbjct: 254 KVKIKVVKNKLSSPFKVVNLEIIFGKGISSEGLLIDLAMEAKIITRSGAWFYYNGEQIAQ 313

Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333
           G+E  +  L  + ++   +E  +R+
Sbjct: 314 GKEKVRELLAADPKMRMELEIQIRE 338


>gi|262112812|emb|CBA73317.1| RecA protein [Burkholderia sp. JPY384]
          Length = 207

 Score =  332 bits (852), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 155/207 (74%), Positives = 183/207 (88%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  
Sbjct: 1   GGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYAAKLGVNVPE 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQ
Sbjct: 61  LLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT +I ++ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK 
Sbjct: 121 ALRKLTGTIKKTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKK 180

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEF 268
            D + G++TRVKVVKNK+A PF++  F
Sbjct: 181 NDEVIGSETRVKVVKNKVAPPFREAVF 207


>gi|290795147|gb|ADD64588.1| RecA recombinase [Vibrio splendidus]
          Length = 224

 Score =  332 bits (852), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 157/226 (69%), Positives = 193/226 (85%), Gaps = 2/226 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  I+
Sbjct: 1   GSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIS 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++
Sbjct: 59  AAQKVGKTCAFIDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVL 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGV
Sbjct: 119 VIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           MFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVV
Sbjct: 179 MFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVV 224


>gi|158263033|gb|ABW24293.1| RecA [Streptococcus ferus]
          Length = 251

 Score =  332 bits (852), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 159/245 (64%), Positives = 201/245 (82%), Gaps = 4/245 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKDGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+G+MFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FYSSVRLD+R    IK     KDS  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYSSVRLDVRGNTQIKGTGDQKDSNIGKETKIKVVKNKIAPPFKEAFVEIMYGEGISRTG 240

Query: 281 ELIDL 285
           EL+ +
Sbjct: 241 ELVKI 245


>gi|223469851|gb|ACM90268.1| RecA [Vibrio parahaemolyticus]
 gi|223469853|gb|ACM90269.1| RecA [Vibrio parahaemolyticus]
 gi|223469855|gb|ACM90270.1| RecA [Vibrio parahaemolyticus]
 gi|223469857|gb|ACM90271.1| RecA [Vibrio parahaemolyticus]
 gi|223469859|gb|ACM90272.1| RecA [Vibrio parahaemolyticus]
 gi|223469861|gb|ACM90273.1| RecA [Vibrio parahaemolyticus]
 gi|223469863|gb|ACM90274.1| RecA [Vibrio parahaemolyticus]
 gi|223469865|gb|ACM90275.1| RecA [Vibrio parahaemolyticus]
 gi|223469867|gb|ACM90276.1| RecA [Vibrio parahaemolyticus]
 gi|223469869|gb|ACM90277.1| RecA [Vibrio parahaemolyticus]
 gi|223469871|gb|ACM90278.1| RecA [Vibrio parahaemolyticus]
 gi|223469873|gb|ACM90279.1| RecA [Vibrio parahaemolyticus]
 gi|223469875|gb|ACM90280.1| RecA [Vibrio parahaemolyticus]
 gi|223469877|gb|ACM90281.1| RecA [Vibrio parahaemolyticus]
 gi|223469879|gb|ACM90282.1| RecA [Vibrio parahaemolyticus]
 gi|223469881|gb|ACM90283.1| RecA [Vibrio parahaemolyticus]
 gi|241993127|gb|ACS74082.1| RecA [Vibrio parahaemolyticus]
 gi|241993129|gb|ACS74083.1| RecA [Vibrio parahaemolyticus]
 gi|241993131|gb|ACS74084.1| RecA [Vibrio parahaemolyticus]
 gi|241993133|gb|ACS74085.1| RecA [Vibrio parahaemolyticus]
 gi|241993135|gb|ACS74086.1| RecA [Vibrio parahaemolyticus]
 gi|241993137|gb|ACS74087.1| RecA [Vibrio parahaemolyticus]
 gi|241993139|gb|ACS74088.1| RecA [Vibrio parahaemolyticus]
 gi|241993141|gb|ACS74089.1| RecA [Vibrio parahaemolyticus]
 gi|241993143|gb|ACS74090.1| RecA [Vibrio parahaemolyticus]
 gi|241993145|gb|ACS74091.1| RecA [Vibrio parahaemolyticus]
 gi|241993147|gb|ACS74092.1| RecA [Vibrio parahaemolyticus]
 gi|241993149|gb|ACS74093.1| RecA [Vibrio parahaemolyticus]
 gi|241993151|gb|ACS74094.1| RecA [Vibrio parahaemolyticus]
 gi|241993153|gb|ACS74095.1| RecA [Vibrio parahaemolyticus]
 gi|241993157|gb|ACS74097.1| RecA [Vibrio parahaemolyticus]
 gi|241993159|gb|ACS74098.1| RecA [Vibrio parahaemolyticus]
 gi|241993161|gb|ACS74099.1| RecA [Vibrio parahaemolyticus]
 gi|241993163|gb|ACS74100.1| RecA [Vibrio parahaemolyticus]
 gi|241993165|gb|ACS74101.1| RecA [Vibrio parahaemolyticus]
 gi|241993167|gb|ACS74102.1| RecA [Vibrio parahaemolyticus]
 gi|241993169|gb|ACS74103.1| RecA [Vibrio parahaemolyticus]
 gi|241993171|gb|ACS74104.1| RecA [Vibrio parahaemolyticus]
 gi|241993173|gb|ACS74105.1| RecA [Vibrio parahaemolyticus]
 gi|241993175|gb|ACS74106.1| RecA [Vibrio parahaemolyticus]
 gi|241993177|gb|ACS74107.1| RecA [Vibrio parahaemolyticus]
 gi|241993179|gb|ACS74108.1| RecA [Vibrio parahaemolyticus]
 gi|241993181|gb|ACS74109.1| RecA [Vibrio parahaemolyticus]
 gi|241993185|gb|ACS74111.1| RecA [Vibrio parahaemolyticus]
 gi|241993187|gb|ACS74112.1| RecA [Vibrio parahaemolyticus]
 gi|241993189|gb|ACS74113.1| RecA [Vibrio parahaemolyticus]
 gi|241993191|gb|ACS74114.1| RecA [Vibrio parahaemolyticus]
 gi|241993193|gb|ACS74115.1| RecA [Vibrio parahaemolyticus]
 gi|241993197|gb|ACS74117.1| RecA [Vibrio parahaemolyticus]
 gi|241993199|gb|ACS74118.1| RecA [Vibrio parahaemolyticus]
 gi|241993201|gb|ACS74119.1| RecA [Vibrio parahaemolyticus]
 gi|241993203|gb|ACS74120.1| RecA [Vibrio parahaemolyticus]
 gi|241993207|gb|ACS74122.1| RecA [Vibrio parahaemolyticus]
 gi|241993209|gb|ACS74123.1| RecA [Vibrio parahaemolyticus]
 gi|241993211|gb|ACS74124.1| RecA [Vibrio parahaemolyticus]
 gi|241993213|gb|ACS74125.1| RecA [Vibrio parahaemolyticus]
 gi|241993215|gb|ACS74126.1| RecA [Vibrio parahaemolyticus]
 gi|241993217|gb|ACS74127.1| RecA [Vibrio parahaemolyticus]
 gi|241993219|gb|ACS74128.1| RecA [Vibrio parahaemolyticus]
 gi|241993221|gb|ACS74129.1| RecA [Vibrio parahaemolyticus]
 gi|241993223|gb|ACS74130.1| RecA [Vibrio parahaemolyticus]
 gi|241993225|gb|ACS74131.1| RecA [Vibrio parahaemolyticus]
 gi|241993227|gb|ACS74132.1| RecA [Vibrio parahaemolyticus]
 gi|241993229|gb|ACS74133.1| RecA [Vibrio parahaemolyticus]
 gi|241993231|gb|ACS74134.1| RecA [Vibrio parahaemolyticus]
 gi|241993233|gb|ACS74135.1| RecA [Vibrio parahaemolyticus]
 gi|241993235|gb|ACS74136.1| RecA [Vibrio parahaemolyticus]
 gi|241993237|gb|ACS74137.1| RecA [Vibrio parahaemolyticus]
 gi|241993239|gb|ACS74138.1| RecA [Vibrio parahaemolyticus]
 gi|241993241|gb|ACS74139.1| RecA [Vibrio parahaemolyticus]
 gi|241993243|gb|ACS74140.1| RecA [Vibrio parahaemolyticus]
 gi|241993245|gb|ACS74141.1| RecA [Vibrio parahaemolyticus]
 gi|241993247|gb|ACS74142.1| RecA [Vibrio parahaemolyticus]
 gi|241993249|gb|ACS74143.1| RecA [Vibrio parahaemolyticus]
 gi|241993251|gb|ACS74144.1| RecA [Vibrio parahaemolyticus]
          Length = 214

 Score =  332 bits (851), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 151/214 (70%), Positives = 185/214 (86%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD
Sbjct: 1   LGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVD 60

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR+
Sbjct: 61  IDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARM 120

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           +SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+
Sbjct: 121 LSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGA 180

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           IK+ D + GN+TR+KVVKNK+A+PFK+    IMY
Sbjct: 181 IKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMY 214


>gi|6694813|gb|AAF25398.1|AF214751_1 RecA protein [Arthrobacter sp. 'SMCC ZAT263']
          Length = 232

 Score =  332 bits (851), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 157/230 (68%), Positives = 192/230 (83%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD
Sbjct: 1   LGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDAEHALDPEYAAKLGVD 60

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
              LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIEGDMG+S  G+QARL
Sbjct: 61  TDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQARL 120

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ +
Sbjct: 121 MSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQT 180

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           +K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS  G +ID+GV+
Sbjct: 181 LKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQGISREGGIIDMGVE 230


>gi|158263071|gb|ABW24312.1| RecA [Streptococcus mutans]
          Length = 251

 Score =  332 bits (851), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 162/251 (64%), Positives = 204/251 (81%), Gaps = 8/251 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRIVEIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIVEIYGPESSGKTTVALHAVAQAQKDGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+G+MFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FYSSVRLD+R    IK     KDS  G +T++KVVKNK+A PFK+   +I+YGEGIS  G
Sbjct: 181 FYSSVRLDVRGNTQIKGTGEQKDSNIGKETKIKVVKNKVAPPFKEAFVEIIYGEGISRTG 240

Query: 281 ELI----DLGV 287
           EL+    DLG+
Sbjct: 241 ELVKIASDLGI 251


>gi|158263037|gb|ABW24295.1| RecA [Streptococcus macedonicus]
          Length = 251

 Score =  332 bits (851), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 158/245 (64%), Positives = 201/245 (82%), Gaps = 4/245 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PR+EI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRSEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G++  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDNHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KDS  G +T++KVVKNK+A PFK  E +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGSGDQKDSNIGKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTG 240

Query: 281 ELIDL 285
           EL+ +
Sbjct: 241 ELVKI 245


>gi|158263053|gb|ABW24303.1| RecA [Streptococcus macacae NCTC 11558]
          Length = 251

 Score =  332 bits (851), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 161/251 (64%), Positives = 204/251 (81%), Gaps = 8/251 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKDGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+G+MFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FYSSVRLD+R    IK     KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYSSVRLDVRGNTQIKGSGDTKDANIGKETKIKVVKNKVAPPFKEAFVEIMYGEGISRTG 240

Query: 281 ELI----DLGV 287
           EL+    DLG+
Sbjct: 241 ELVKIASDLGI 251


>gi|158263055|gb|ABW24304.1| RecA [Streptococcus massiliensis]
          Length = 251

 Score =  332 bits (851), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 158/245 (64%), Positives = 202/245 (82%), Gaps = 4/245 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+G+MFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK    +KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDEKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTG 240

Query: 281 ELIDL 285
           ELI +
Sbjct: 241 ELIKI 245


>gi|158263009|gb|ABW24281.1| RecA [Streptococcus agalactiae ATCC 13813]
          Length = 251

 Score =  332 bits (851), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 160/245 (65%), Positives = 200/245 (81%), Gaps = 4/245 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRIVEIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIVEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FYSSVRLD+R    IK     KD   G +T++KVVKNK+A PF++   +IMYGEGIS  G
Sbjct: 181 FYSSVRLDVRGNTQIKGTGEHKDHNVGKETKIKVVKNKVAPPFREAFVEIMYGEGISRTG 240

Query: 281 ELIDL 285
           ELI +
Sbjct: 241 ELIKI 245


>gi|308522640|dbj|BAJ22931.1| DNA recombination protein [Aliivibrio sifiae]
 gi|308522642|dbj|BAJ22932.1| DNA recombination protein [Aliivibrio sifiae]
 gi|308522646|dbj|BAJ22934.1| DNA recombination protein [Aliivibrio sp. ATCC 33715]
          Length = 212

 Score =  332 bits (851), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 153/212 (72%), Positives = 184/212 (86%)

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL L  IAQ+QK G TCAF+DAEHALD IYA+KLGVD+  LL SQPDTGEQ
Sbjct: 1   YGPESSGKTTLTLEAIAQAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLCSQPDTGEQ 60

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +
Sbjct: 61  ALEIVDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQ 120

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+
Sbjct: 121 SNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGNETRI 180

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           KVVKNK+A+PFKQ E  I+YG+G +  GELID
Sbjct: 181 KVVKNKIAAPFKQAETQILYGKGFNREGELID 212


>gi|262112798|emb|CBA73296.1| RecA protein [Burkholderia sp. JPY359]
 gi|262112806|emb|CBA73309.1| RecA protein [Burkholderia sp. JPY380]
 gi|262112820|emb|CBA73331.1| RecA protein [Burkholderia sp. JPY389]
 gi|262112882|emb|CBA73425.1| RecA protein [Burkholderia sp. JPY461]
          Length = 207

 Score =  332 bits (850), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 152/207 (73%), Positives = 184/207 (88%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA+KLGV++ +
Sbjct: 1   GGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAQKLGVNVSD 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQ
Sbjct: 61  LLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK 
Sbjct: 121 ALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKK 180

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEF 268
            D + GN+TRVKVVKNK++ PF++  F
Sbjct: 181 NDEVIGNETRVKVVKNKVSPPFREAIF 207


>gi|241993155|gb|ACS74096.1| RecA [Vibrio parahaemolyticus]
          Length = 214

 Score =  332 bits (850), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 151/214 (70%), Positives = 185/214 (86%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD
Sbjct: 1   LGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVD 60

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR+
Sbjct: 61  IDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARM 120

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           +SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+
Sbjct: 121 LSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGA 180

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           IK+ D + GN+TR+KVVKNK+A+PFK+    IMY
Sbjct: 181 IKEGDEVLGNETRIKVVKNKIAAPFKEANTQIMY 214


>gi|268628233|gb|ACZ13515.1| DNA recombination protein [Xenorhabdus szentirmaii]
          Length = 215

 Score =  332 bits (850), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 156/215 (72%), Positives = 186/215 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGRTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEGD+
Sbjct: 61  DPIYAKKLGVDIDNLLCSQPDTGEQALEICDALSRSGAVDVIIVDSVAALTPKAEIEGDI 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           SVRLDIRR GS+K+ D + G++TRVKVVKNK+A+P
Sbjct: 181 SVRLDIRRTGSVKNGDEVVGSETRVKVVKNKVAAP 215


>gi|6694835|gb|AAF25420.1|AF214773_1 RecA protein [Arthrobacter sp. 'SMCC ZAT014']
          Length = 230

 Score =  332 bits (850), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 155/225 (68%), Positives = 189/225 (84%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           + LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA
Sbjct: 1   IALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDAEHALDPEYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            KLGVD   LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIEGDMG+S  
Sbjct: 61  AKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIEGDMGDSHV 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D
Sbjct: 121 GLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRID 180

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277
           +RR+ ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS
Sbjct: 181 VRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQGIS 225


>gi|158262812|gb|ABW24183.1| RecA [Streptococcus cristatus ATCC 51100]
 gi|158263041|gb|ABW24297.1| RecA [Streptococcus gordonii]
          Length = 251

 Score =  332 bits (850), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 160/245 (65%), Positives = 201/245 (82%), Gaps = 4/245 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+
Sbjct: 61  HALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIKD----KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDAKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTG 240

Query: 281 ELIDL 285
           ELI +
Sbjct: 241 ELIKI 245


>gi|125534156|gb|EAY80704.1| hypothetical protein OsI_35888 [Oryza sativa Indica Group]
          Length = 430

 Score =  331 bits (849), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 174/336 (51%), Positives = 243/336 (72%), Gaps = 5/336 (1%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           D   E NI  K  AL+ AL QI+  +G+ +IM L       E + V+S+GS  LD+ALGI
Sbjct: 58  DGYSEANIKKKDFALQQALDQIKSAFGEESIMWLNHSYGPKE-VPVISTGSFALDMALGI 116

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG PKGR+VEIYGPE+SGKTTLALH IA++QK GG CAF+DAEHALD   A  +GV  ++
Sbjct: 117 GGLPKGRVVEIYGPEASGKTTLALHIIAEAQKNGGYCAFIDAEHALDPTLAESIGVKAEH 176

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPD GEQAL + D+L+RSG++D++V+DSVAAL P+ E++G+MG++   +QARLMSQ
Sbjct: 177 LLLSQPDCGEQALGLADILIRSGSIDVVVVDSVAALVPKTELDGEMGDAHVALQARLMSQ 236

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVM--FGSP-ETTTGGNALKFYSSVRLDIRRVGS 238
           ALRKL+ S+SRS+ +LVFINQ+R K+     FG+P E T GGNALKFY+SVRL+ +R+G 
Sbjct: 237 ALRKLSHSLSRSRTMLVFINQVRSKLSTFSGFGAPAEVTCGGNALKFYASVRLNTKRIGL 296

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IK  + + G Q +VK+VKNK A PFK V  ++ +G+G+S   E+I+LG K   + KSG +
Sbjct: 297 IKKSEEVVGTQIQVKIVKNKHAPPFKTVHLELEFGKGLSRELEIIELGFKHKFITKSGVF 356

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
           +   GQ    G++  K +L EN  + E++ S+++++
Sbjct: 357 YHLNGQNF-HGKDALKCYLAENKNVLESLMSMIKES 391


>gi|262112670|emb|CBA73098.1| RecA protein [Burkholderia sp. JPY157]
 gi|262112712|emb|CBA73164.1| RecA protein [Burkholderia sp. JPY264]
 gi|262112714|emb|CBA73167.1| RecA protein [Burkholderia sp. JPY266]
 gi|262112716|emb|CBA73170.1| RecA protein [Burkholderia sp. JPY268]
          Length = 207

 Score =  331 bits (849), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 152/207 (73%), Positives = 183/207 (88%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA+KLGV++  
Sbjct: 1   GGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAQKLGVNVSE 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQ
Sbjct: 61  LLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK 
Sbjct: 121 ALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKK 180

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEF 268
            D + GN+TRVKVVKNK++ PF++  F
Sbjct: 181 NDEVIGNETRVKVVKNKVSPPFREAIF 207


>gi|145577839|gb|ABP87370.1| RecA [Vibrio rhizosphaerae]
          Length = 223

 Score =  331 bits (849), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 155/225 (68%), Positives = 193/225 (85%), Gaps = 2/225 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGVD+ +LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAKKLGVDIDSLLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVV
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVV 223


>gi|262112666|emb|CBA73092.1| RecA protein [Burkholderia sp. JPY155]
 gi|262112674|emb|CBA73105.1| RecA protein [Burkholderia sp. JPY159]
 gi|262112676|emb|CBA73108.1| RecA protein [Burkholderia sp. JPY160]
 gi|262112682|emb|CBA73117.1| RecA protein [Burkholderia sp. JPY164]
 gi|262112684|emb|CBA73120.1| RecA protein [Burkholderia sp. JPY166]
 gi|262112686|emb|CBA73123.1| RecA protein [Burkholderia sp. JPY167]
 gi|262112688|emb|CBA73127.1| RecA protein [Burkholderia sp. JPY168]
 gi|262112696|emb|CBA73139.1| RecA protein [Burkholderia sp. JPY250]
 gi|262112706|emb|CBA73153.1| RecA protein [Burkholderia sp. JPY258]
 gi|262112708|emb|CBA73156.1| RecA protein [Burkholderia sp. JPY259]
 gi|262112710|emb|CBA73161.1| RecA protein [Burkholderia sp. JPY262]
 gi|262112720|emb|CBA73176.1| RecA protein [Burkholderia sp. JPY271]
 gi|262112722|emb|CBA73179.1| RecA protein [Burkholderia sp. JPY272]
 gi|262112724|emb|CBA73183.1| RecA protein [Burkholderia sp. JPY276]
 gi|262112726|emb|CBA73186.1| RecA protein [Burkholderia sp. JPY277]
 gi|262112728|emb|CBA73189.1| RecA protein [Burkholderia sp. JPY278]
 gi|262112730|emb|CBA73192.1| RecA protein [Burkholderia sp. JPY279]
 gi|262112732|emb|CBA73195.1| RecA protein [Burkholderia sp. JPY280]
 gi|262112734|emb|CBA73197.1| RecA protein [Burkholderia sp. JPY281]
 gi|262112736|emb|CBA73200.1| RecA protein [Burkholderia sp. JPY282]
 gi|262112738|emb|CBA73203.1| RecA protein [Burkholderia sp. JPY283]
 gi|262112748|emb|CBA73218.1| RecA protein [Burkholderia sp. JPY294]
 gi|262112750|emb|CBA73221.1| RecA protein [Burkholderia sp. JPY296]
 gi|262112752|emb|CBA73224.1| RecA protein [Burkholderia sp. JPY298]
 gi|262112754|emb|CBA73227.1| RecA protein [Burkholderia sp. JPY300]
 gi|262112756|emb|CBA73230.1| RecA protein [Burkholderia sp. JPY301]
 gi|262112788|emb|CBA73280.1| RecA protein [Burkholderia sp. JPY346]
 gi|262112792|emb|CBA73287.1| RecA protein [Burkholderia sp. JPY349]
 gi|262112794|emb|CBA73290.1| RecA protein [Burkholderia sp. JPY350]
 gi|262112796|emb|CBA73293.1| RecA protein [Burkholderia sp. JPY351]
 gi|262112808|emb|CBA73312.1| RecA protein [Burkholderia sp. JPY381]
 gi|262112810|emb|CBA73315.1| RecA protein [Burkholderia sp. JPY382]
 gi|262112816|emb|CBA73324.1| RecA protein [Burkholderia sp. JPY386]
 gi|262112818|emb|CBA73327.1| RecA protein [Burkholderia sp. JPY388]
 gi|262112830|emb|CBA73347.1| RecA protein [Burkholderia sp. JPY404]
 gi|262112842|emb|CBA73365.1| RecA protein [Burkholderia sp. JPY413]
 gi|262112844|emb|CBA73368.1| RecA protein [Burkholderia sp. JPY414]
 gi|262112866|emb|CBA73399.1| RecA protein [Burkholderia sp. JPY434]
 gi|262112868|emb|CBA73402.1| RecA protein [Burkholderia sp. JPY439]
 gi|262112880|emb|CBA73421.1| RecA protein [Burkholderia sp. JPY456]
 gi|262112916|emb|CBA73478.1| RecA protein [Burkholderia sp. JPY578]
 gi|262112924|emb|CBA73495.1| RecA protein [Burkholderia sp. JPY585]
 gi|262112926|emb|CBA73497.1| RecA protein [Burkholderia sp. JPY587]
          Length = 207

 Score =  331 bits (849), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 154/207 (74%), Positives = 183/207 (88%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  
Sbjct: 1   GGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYAAKLGVNVPE 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQ
Sbjct: 61  LLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT +I ++ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK 
Sbjct: 121 ALRKLTGTIKKTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKK 180

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEF 268
            D + G++TRVKVVKNK++ PF++  F
Sbjct: 181 NDEVIGSETRVKVVKNKVSPPFREAVF 207


>gi|262112814|emb|CBA73320.1| RecA protein [Burkholderia sp. JPY385]
          Length = 207

 Score =  331 bits (849), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 153/207 (73%), Positives = 183/207 (88%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++ +
Sbjct: 1   GGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVAD 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQ
Sbjct: 61  LLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK 
Sbjct: 121 ALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKK 180

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEF 268
            D + GN+TRVKVVKNK+A PF++  F
Sbjct: 181 NDEVIGNETRVKVVKNKVAPPFREAIF 207


>gi|6694806|gb|AAF25391.1|AF214744_1 RecA protein [Arthrobacter sp. 'SMCC G960']
          Length = 226

 Score =  331 bits (849), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 154/223 (69%), Positives = 188/223 (84%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LD+ALGIGG P+GR++EIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA K
Sbjct: 2   LDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPDYAAK 61

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           LGVD   LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIEGDMG+S  G+
Sbjct: 62  LGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGL 121

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
           QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+R
Sbjct: 122 QARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVR 181

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277
           R+ ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS
Sbjct: 182 RIQTLKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQGIS 224


>gi|223469883|gb|ACM90284.1| RecA [Vibrio parahaemolyticus]
 gi|241993195|gb|ACS74116.1| RecA [Vibrio parahaemolyticus]
          Length = 214

 Score =  331 bits (849), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 150/214 (70%), Positives = 185/214 (86%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD
Sbjct: 1   LGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVD 60

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR+
Sbjct: 61  IDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARM 120

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           +SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+
Sbjct: 121 LSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGA 180

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           IK+ D + GN+TR++VVKNK+A+PFK+    IMY
Sbjct: 181 IKEGDEVVGNETRIRVVKNKIAAPFKEANTQIMY 214


>gi|47571286|gb|AAT35800.1| RecA [Mycobacterium nonchromogenicum]
          Length = 243

 Score =  331 bits (849), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 157/240 (65%), Positives = 198/240 (82%), Gaps = 2/240 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 6   DREKALELAMAQIDKNFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YARKLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYARKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADTLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+T
Sbjct: 184 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIEALKDGTDAVGNRT 243


>gi|158263151|gb|ABW24352.1| RecA [Streptococcus salivarius]
 gi|158263167|gb|ABW24360.1| RecA [Streptococcus vestibularis ATCC 49124]
          Length = 251

 Score =  331 bits (849), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 160/251 (63%), Positives = 203/251 (80%), Gaps = 8/251 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQTQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+G+MFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KD   G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDKKDQNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTG 240

Query: 281 ELI----DLGV 287
           EL+    DLG+
Sbjct: 241 ELVKIASDLGI 251


>gi|268628237|gb|ACZ13517.1| DNA recombination protein [Xenorhabdus budapestensis]
 gi|268628239|gb|ACZ13518.1| DNA recombination protein [Xenorhabdus budapestensis]
 gi|268628241|gb|ACZ13519.1| DNA recombination protein [Xenorhabdus indica]
 gi|268628243|gb|ACZ13520.1| DNA recombination protein [Xenorhabdus indica]
 gi|268628245|gb|ACZ13521.1| DNA recombination protein [Xenorhabdus cabanillasii]
 gi|268628247|gb|ACZ13522.1| DNA recombination protein [Xenorhabdus innexi]
 gi|268628249|gb|ACZ13523.1| DNA recombination protein [Xenorhabdus innexi]
 gi|268628251|gb|ACZ13524.1| DNA recombination protein [Xenorhabdus stockiae]
          Length = 215

 Score =  331 bits (848), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 155/215 (72%), Positives = 186/215 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGRTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++
Sbjct: 61  DPVYAKKLGVDIDNLLCSQPDTGEQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEI 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           SVRLDIRR GS+K+ D + G++TRVKVVKNK+A+P
Sbjct: 181 SVRLDIRRTGSVKNSDEVVGSETRVKVVKNKVAAP 215


>gi|268628261|gb|ACZ13529.1| DNA recombination protein [Xenorhabdus bovienii]
          Length = 215

 Score =  331 bits (848), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 155/215 (72%), Positives = 186/215 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++
Sbjct: 61  DPVYAKKLGVDIDNLLCSQPDTGEQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEI 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           SVRLDIRR GS+K+ D + G++TRVKVVKNK+A+P
Sbjct: 181 SVRLDIRRTGSVKNGDEVVGSETRVKVVKNKIAAP 215


>gi|158263103|gb|ABW24328.1| RecA [Streptococcus peroris ATCC 700780]
          Length = 251

 Score =  331 bits (848), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 159/245 (64%), Positives = 200/245 (81%), Gaps = 4/245 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGSTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEALVEIMYGEGISRTG 240

Query: 281 ELIDL 285
           EL+ +
Sbjct: 241 ELLKI 245


>gi|306517563|emb|CBO93075.1| DNA recombinase A [Pantoea dispersa]
          Length = 220

 Score =  331 bits (848), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 153/215 (71%), Positives = 186/215 (86%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           L LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA
Sbjct: 6   LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPVYA 65

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           +KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  
Sbjct: 66  KKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHM 125

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD
Sbjct: 126 GLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 185

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           IRR+G+IK+ D + G++TRVKVVKNK+A+PF + E
Sbjct: 186 IRRIGAIKEGDEVVGSETRVKVVKNKVAAPFSKAE 220


>gi|268628499|gb|ACZ13648.1| DNA recombination protein [Photorhabdus luminescens subsp. kayaii]
 gi|268628501|gb|ACZ13649.1| DNA recombination protein [Photorhabdus luminescens subsp. kayaii]
 gi|268628503|gb|ACZ13650.1| DNA recombination protein [Photorhabdus luminescens subsp. kayaii]
 gi|268628505|gb|ACZ13651.1| DNA recombination protein [Photorhabdus luminescens subsp. kayaii]
 gi|268628507|gb|ACZ13652.1| DNA recombination protein [Photorhabdus luminescens subsp. kayaii]
 gi|268628509|gb|ACZ13653.1| DNA recombination protein [Photorhabdus luminescens subsp.
           laumondii]
 gi|268628511|gb|ACZ13654.1| DNA recombination protein [Photorhabdus luminescens subsp.
           luminescens]
 gi|268628513|gb|ACZ13655.1| DNA recombination protein [Photorhabdus luminescens subsp.
           luminescens]
 gi|268628519|gb|ACZ13658.1| DNA recombination protein [Photorhabdus luminescens subsp.
           hainanensis]
 gi|268628521|gb|ACZ13659.1| DNA recombination protein [Photorhabdus luminescens subsp.
           akhurstii]
          Length = 215

 Score =  331 bits (848), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 154/215 (71%), Positives = 187/215 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++
Sbjct: 61  DPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKSSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           SVRLDIRR+GS+K+ + + G++TRVKVVKNK+A+P
Sbjct: 181 SVRLDIRRIGSVKNGEEVVGSETRVKVVKNKVAAP 215


>gi|42560956|ref|NP_975407.1| recombinase A [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|313665441|ref|YP_004047312.1| RecA protein [Mycoplasma leachii PG50]
 gi|60392995|sp|P62218|RECA_MYCMS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|42492453|emb|CAE77049.1| recombination protein recA [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
 gi|301320959|gb|ADK69602.1| RecA protein [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
 gi|312949732|gb|ADR24328.1| RecA protein [Mycoplasma leachii PG50]
          Length = 345

 Score =  331 bits (848), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 163/298 (54%), Positives = 226/298 (75%), Gaps = 2/298 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SK L+ A+ +I++++GKG+IM LG   ++   +E  SSGSL LD ALGIGG+PKGRI+EI
Sbjct: 21  SKELKEAIKEIEKMFGKGSIMVLGQSDNL--NVETFSSGSLLLDNALGIGGYPKGRIIEI 78

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL+LH I + QK GG  AF+DAEH+LD  Y   LG+D   LL+SQPD GEQ
Sbjct: 79  YGPESSGKTTLSLHAICEIQKLGGIAAFIDAEHSLDPKYCHNLGIDTNKLLVSQPDNGEQ 138

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           AL+I +ML+ S ++D+I++DSVAAL P+ E+EG+M +   G+QAR+MS+ALRKL   I++
Sbjct: 139 ALDILEMLINSNSIDLIIVDSVAALVPKTELEGEMSDQSIGLQARMMSKALRKLNGLIAK 198

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           S   ++FINQ+R KIGV+FG+PETTTGG ALKF+SS+RL++R+  +I     I GN+ ++
Sbjct: 199 SNTTVIFINQLREKIGVIFGNPETTTGGKALKFFSSIRLEVRKSENILSNSEIIGNKIKI 258

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           K+VKNK A PFK     ++Y +GI   GEL+DL V   IV+KSG W+S++ +++GQG+
Sbjct: 259 KIVKNKTAIPFKTATISLLYNKGIDKIGELVDLLVSYEIVEKSGVWYSYQNEKIGQGK 316


>gi|268628253|gb|ACZ13525.1| DNA recombination protein [Xenorhabdus bovienii]
 gi|268628255|gb|ACZ13526.1| DNA recombination protein [Xenorhabdus bovienii]
 gi|268628257|gb|ACZ13527.1| DNA recombination protein [Xenorhabdus bovienii]
 gi|268628259|gb|ACZ13528.1| DNA recombination protein [Xenorhabdus bovienii]
          Length = 215

 Score =  330 bits (847), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 155/215 (72%), Positives = 186/215 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++
Sbjct: 61  DPVYAKKLGVDIDNLLCSQPDTGEQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEI 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           SVRLDIRR GS+K+ D + G++TRVKVVKNK+A+P
Sbjct: 181 SVRLDIRRTGSVKNGDEVVGSETRVKVVKNKIAAP 215


>gi|115441659|ref|NP_001045109.1| Os01g0901200 [Oryza sativa Japonica Group]
 gi|56784510|dbj|BAD82767.1| putative recA protein [Oryza sativa Japonica Group]
 gi|56784869|dbj|BAD82109.1| putative recA protein [Oryza sativa Japonica Group]
 gi|113534640|dbj|BAF07023.1| Os01g0901200 [Oryza sativa Japonica Group]
 gi|222619696|gb|EEE55828.1| hypothetical protein OsJ_04434 [Oryza sativa Japonica Group]
          Length = 429

 Score =  330 bits (847), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 179/332 (53%), Positives = 243/332 (73%), Gaps = 6/332 (1%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N+  K  AL  A+ QI   +GKGAIM LG      E + VVS+GS  LD+ALG GG P
Sbjct: 59  EENLSKKDLALHQAIDQITSAFGKGAIMWLGRSEGRRE-VPVVSTGSFSLDLALGTGGLP 117

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR++E+YGPE+SGKTTLALH IA++QK GG CAFVDAEHALD   A  +GV+  NLL+S
Sbjct: 118 KGRVIEVYGPEASGKTTLALHVIAEAQKHGGYCAFVDAEHALDPALAESIGVNTSNLLLS 177

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQAL + D L+RSG+VD++V+DSVAAL P++E++G+MG++   +QARLMSQALRK
Sbjct: 178 QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKSELDGEMGDAHVALQARLMSQALRK 237

Query: 186 LTSSISRSKCILVFINQMRMKIGVM--FGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           L+ S+S S+ IL+FINQ+R K+     FG P E T+GGNALKFY+SVR++I+R+G +K  
Sbjct: 238 LSHSLSLSQTILLFINQIRSKVTTFGGFGGPMEVTSGGNALKFYASVRMNIKRIGLVKKG 297

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK-SGAWFSF 301
           +   G+Q  VK+VKNK A PFK  +F++ +G+GI    ELI+LG+K  +V K  GA++SF
Sbjct: 298 EETIGSQVLVKIVKNKHAPPFKTAQFELEFGKGICRSSELIELGLKHKLVKKLGGAFYSF 357

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
             +   +G++  K +L EN  IA+ +E+ LR+
Sbjct: 358 NEESY-RGKDALKSYLNENESIAKELETNLRK 388


>gi|262112800|emb|CBA73299.1| RecA protein [Burkholderia sp. JPY361]
 gi|262112918|emb|CBA73485.1| RecA protein [Burkholderia sp. JPY580]
 gi|262112922|emb|CBA73492.1| RecA protein [Burkholderia sp. JPY582]
          Length = 207

 Score =  330 bits (847), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 153/207 (73%), Positives = 183/207 (88%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +
Sbjct: 1   GGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSD 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQ
Sbjct: 61  LLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK 
Sbjct: 121 ALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKK 180

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEF 268
            D + GN+TRVKVVKNK++ PF++  F
Sbjct: 181 NDEVIGNETRVKVVKNKVSPPFREAIF 207


>gi|262112668|emb|CBA73095.1| RecA protein [Burkholderia sp. JPY156]
 gi|262112672|emb|CBA73102.1| RecA protein [Burkholderia sp. JPY158]
 gi|262112678|emb|CBA73111.1| RecA protein [Burkholderia sp. JPY161]
 gi|262112680|emb|CBA73114.1| RecA protein [Burkholderia sp. JPY162]
 gi|262112690|emb|CBA73130.1| RecA protein [Burkholderia sp. JPY169]
 gi|262112692|emb|CBA73134.1| RecA protein [Burkholderia sp. JPY170]
 gi|262112694|emb|CBA73136.1| RecA protein [Burkholderia sp. JPY171]
 gi|262112698|emb|CBA73142.1| RecA protein [Burkholderia sp. JPY251]
 gi|262112700|emb|CBA73145.1| RecA protein [Burkholderia sp. JPY255]
 gi|262112702|emb|CBA73148.1| RecA protein [Burkholderia sp. JPY256]
 gi|262112704|emb|CBA73151.1| RecA protein [Burkholderia sp. JPY257]
 gi|262112718|emb|CBA73173.1| RecA protein [Burkholderia sp. JPY270]
 gi|262112740|emb|CBA73206.1| RecA protein [Burkholderia sp. JPY284]
 gi|262112742|emb|CBA73209.1| RecA protein [Burkholderia sp. JPY285]
 gi|262112744|emb|CBA73212.1| RecA protein [Burkholderia sp. JPY286]
 gi|262112746|emb|CBA73215.1| RecA protein [Burkholderia sp. JPY288]
 gi|262112758|emb|CBA73234.1| RecA protein [Burkholderia sp. JPY303]
 gi|262112760|emb|CBA73237.1| RecA protein [Burkholderia sp. JPY306]
 gi|262112762|emb|CBA73240.1| RecA protein [Burkholderia sp. JPY307]
 gi|262112764|emb|CBA73242.1| RecA protein [Burkholderia sp. JPY309]
 gi|262112766|emb|CBA73245.1| RecA protein [Burkholderia sp. JPY310]
 gi|262112768|emb|CBA73248.1| RecA protein [Burkholderia sp. JPY312]
 gi|262112770|emb|CBA73251.1| RecA protein [Burkholderia sp. JPY314]
 gi|262112772|emb|CBA73254.1| RecA protein [Burkholderia sp. JPY315]
 gi|262112774|emb|CBA73257.1| RecA protein [Burkholderia sp. JPY317]
 gi|262112778|emb|CBA73263.1| RecA protein [Burkholderia sp. JPY323]
 gi|262112780|emb|CBA73266.1| RecA protein [Burkholderia sp. JPY324]
 gi|262112782|emb|CBA73270.1| RecA protein [Burkholderia sp. JPY325]
 gi|262112784|emb|CBA73274.1| RecA protein [Burkholderia sp. JPY326]
 gi|262112804|emb|CBA73305.1| RecA protein [Burkholderia sp. JPY368]
 gi|262112822|emb|CBA73334.1| RecA protein [Burkholderia sp. JPY395]
 gi|262112824|emb|CBA73337.1| RecA protein [Burkholderia sp. JPY396]
 gi|262112826|emb|CBA73341.1| RecA protein [Burkholderia sp. JPY401]
 gi|262112828|emb|CBA73344.1| RecA protein [Burkholderia sp. JPY403]
 gi|262112832|emb|CBA73351.1| RecA protein [Burkholderia sp. JPY406]
 gi|262112834|emb|CBA73354.1| RecA protein [Burkholderia sp. JPY407]
 gi|262112836|emb|CBA73357.1| RecA protein [Burkholderia sp. JPY409]
 gi|262112838|emb|CBA73360.1| RecA protein [Burkholderia sp. JPY410]
 gi|262112840|emb|CBA73363.1| RecA protein [Burkholderia sp. JPY411]
 gi|262112846|emb|CBA73371.1| RecA protein [Burkholderia sp. JPY417]
 gi|262112848|emb|CBA73374.1| RecA protein [Burkholderia sp. JPY418]
 gi|262112850|emb|CBA73376.1| RecA protein [Burkholderia sp. JPY419]
 gi|262112852|emb|CBA73378.1| RecA protein [Burkholderia sp. JPY420]
 gi|262112854|emb|CBA73381.1| RecA protein [Burkholderia sp. JPY421]
 gi|262112856|emb|CBA73385.1| RecA protein [Burkholderia sp. JPY422]
 gi|262112858|emb|CBA73388.1| RecA protein [Burkholderia sp. JPY425]
 gi|262112860|emb|CBA73389.1| RecA protein [Burkholderia sp. JPY430]
 gi|262112862|emb|CBA73392.1| RecA protein [Burkholderia sp. JPY431]
 gi|262112864|emb|CBA73396.1| RecA protein [Burkholderia sp. JPY432]
 gi|262112872|emb|CBA73408.1| RecA protein [Burkholderia sp. JPY449]
 gi|262112876|emb|CBA73414.1| RecA protein [Burkholderia sp. JPY453]
 gi|262112878|emb|CBA73417.1| RecA protein [Burkholderia sp. JPY454]
 gi|262112884|emb|CBA73428.1| RecA protein [Burkholderia sp. JPY465]
 gi|262112886|emb|CBA73431.1| RecA protein [Burkholderia sp. JPY467]
 gi|262112888|emb|CBA73433.1| RecA protein [Burkholderia sp. JPY468]
 gi|262112890|emb|CBA73436.1| RecA protein [Burkholderia sp. JPY471]
 gi|262112892|emb|CBA73440.1| RecA protein [Burkholderia sp. JPY472]
 gi|262112894|emb|CBA73444.1| RecA protein [Burkholderia sp. JPY476]
 gi|262112896|emb|CBA73447.1| RecA protein [Burkholderia sp. JPY478]
 gi|262112898|emb|CBA73450.1| RecA protein [Burkholderia sp. JPY480]
 gi|262112900|emb|CBA73453.1| RecA protein [Burkholderia sp. JPY481]
 gi|262112902|emb|CBA73456.1| RecA protein [Burkholderia sp. JPY484]
 gi|262112904|emb|CBA73459.1| RecA protein [Burkholderia sp. JPY485]
 gi|262112906|emb|CBA73461.1| RecA protein [Burkholderia sp. JPY487]
 gi|262112908|emb|CBA73466.1| RecA protein [Burkholderia sp. JPY489]
 gi|262112910|emb|CBA73469.1| RecA protein [Burkholderia sp. JPY490]
 gi|262112912|emb|CBA73472.1| RecA protein [Burkholderia sp. JPY492]
 gi|262112914|emb|CBA73475.1| RecA protein [Burkholderia sp. JPY504]
 gi|262112928|emb|CBA73500.1| RecA protein [Burkholderia sp. JPY595]
 gi|262112930|emb|CBA73503.1| RecA protein [Burkholderia sp. JPY602]
 gi|262112932|emb|CBA73506.1| RecA protein [Burkholderia sp. JPY604]
 gi|262112934|emb|CBA73509.1| RecA protein [Burkholderia sp. JPY605]
 gi|262112936|emb|CBA73512.1| RecA protein [Burkholderia sp. JPY622]
 gi|262112938|emb|CBA73515.1| RecA protein [Burkholderia sp. JPY623]
 gi|262112942|emb|CBA73521.1| RecA protein [Burkholderia sp. JPY634]
 gi|262112944|emb|CBA73524.1| RecA protein [Burkholderia sp. JPY636]
 gi|262112946|emb|CBA73526.1| RecA protein [Burkholderia sp. JPY637]
          Length = 207

 Score =  330 bits (847), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 153/207 (73%), Positives = 183/207 (88%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +
Sbjct: 1   GGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVAD 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQ
Sbjct: 61  LLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK 
Sbjct: 121 ALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKK 180

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEF 268
            D + GN+TRVKVVKNK++ PF++  F
Sbjct: 181 NDEVIGNETRVKVVKNKVSPPFREAIF 207


>gi|262112786|emb|CBA73277.1| RecA protein [Burkholderia sp. JPY345]
 gi|262112790|emb|CBA73283.1| RecA protein [Burkholderia sp. JPY347]
 gi|262112802|emb|CBA73302.1| RecA protein [Burkholderia sp. JPY366]
 gi|262112920|emb|CBA73488.1| RecA protein [Burkholderia sp. JPY581]
          Length = 207

 Score =  330 bits (847), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 152/207 (73%), Positives = 183/207 (88%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +
Sbjct: 1   GGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAAKLGVNVSD 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQ
Sbjct: 61  LLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK 
Sbjct: 121 ALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKK 180

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEF 268
            D + GN+TRVKVVKNK++ PF++  F
Sbjct: 181 NDEVIGNETRVKVVKNKVSPPFREAIF 207


>gi|241993205|gb|ACS74121.1| RecA [Vibrio parahaemolyticus]
          Length = 214

 Score =  330 bits (847), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 150/214 (70%), Positives = 185/214 (86%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD
Sbjct: 1   LGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVD 60

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEI+G+MG+S  G+QAR+
Sbjct: 61  IDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIKGEMGDSHMGLQARM 120

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           +SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+
Sbjct: 121 LSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGA 180

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           IK+ D + GN+TR+KVVKNK+A+PFK+    IMY
Sbjct: 181 IKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMY 214


>gi|268628515|gb|ACZ13656.1| DNA recombination protein [Photorhabdus luminescens subsp.
           caribbeanensis]
 gi|268628517|gb|ACZ13657.1| DNA recombination protein [Photorhabdus luminescens subsp.
           caribbeanensis]
          Length = 215

 Score =  330 bits (847), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 154/215 (71%), Positives = 187/215 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++
Sbjct: 61  DPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKSSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           SVRLDIRR+GS+K+ + + G++TRVKVVKNK+A+P
Sbjct: 181 SVRLDIRRIGSVKNGEEVIGSETRVKVVKNKVAAP 215


>gi|268628535|gb|ACZ13666.1| DNA recombination protein [Photorhabdus temperata subsp. temperata]
 gi|268628537|gb|ACZ13667.1| DNA recombination protein [Photorhabdus temperata subsp. temperata]
 gi|268628539|gb|ACZ13668.1| DNA recombination protein [Photorhabdus temperata subsp. temperata]
          Length = 215

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 153/215 (71%), Positives = 187/215 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++
Sbjct: 61  DPVYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKSSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           SVRLDIRR+GS+K+ + + G++TRVKVVKNK+A+P
Sbjct: 181 SVRLDIRRIGSVKNGEEVVGSETRVKVVKNKVAAP 215


>gi|158263099|gb|ABW24326.1| RecA [Streptococcus parasanguinis ATCC 15912]
          Length = 251

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 158/245 (64%), Positives = 200/245 (81%), Gaps = 4/245 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAMVEIMYGEGISRTG 240

Query: 281 ELIDL 285
           EL+ +
Sbjct: 241 ELVKI 245


>gi|157073237|gb|ABV09039.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073239|gb|ABV09040.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073241|gb|ABV09041.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073243|gb|ABV09042.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073245|gb|ABV09043.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073247|gb|ABV09044.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073249|gb|ABV09045.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073251|gb|ABV09046.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073253|gb|ABV09047.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073255|gb|ABV09048.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073257|gb|ABV09049.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073259|gb|ABV09050.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073261|gb|ABV09051.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073263|gb|ABV09052.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073265|gb|ABV09053.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073267|gb|ABV09054.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073269|gb|ABV09055.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073271|gb|ABV09056.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073273|gb|ABV09057.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073275|gb|ABV09058.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073277|gb|ABV09059.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073279|gb|ABV09060.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073281|gb|ABV09061.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073283|gb|ABV09062.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073285|gb|ABV09063.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073287|gb|ABV09064.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073289|gb|ABV09065.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073291|gb|ABV09066.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073293|gb|ABV09067.1| recombination-repair protein [Vibrio parahaemolyticus]
          Length = 211

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 152/211 (72%), Positives = 185/211 (87%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+M
Sbjct: 61  DPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           SVRLDIRR G+IK+ D + GN+TR+KVVKNK
Sbjct: 181 SVRLDIRRTGAIKEGDEVVGNETRIKVVKNK 211


>gi|158263047|gb|ABW24300.1| RecA [Streptococcus infantis ATCC 700779]
          Length = 251

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 159/245 (64%), Positives = 200/245 (81%), Gaps = 4/245 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGSTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEALVEIMYGEGISRTG 240

Query: 281 ELIDL 285
           EL+ +
Sbjct: 241 ELLKI 245


>gi|241993183|gb|ACS74110.1| RecA [Vibrio parahaemolyticus]
          Length = 214

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 149/214 (69%), Positives = 185/214 (86%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD
Sbjct: 1   LGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVD 60

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR+
Sbjct: 61  IDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARM 120

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           +SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+
Sbjct: 121 LSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGA 180

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           IK+ D + GN+TR++VVKN++A+PFK+    IMY
Sbjct: 181 IKEDDEVVGNETRIRVVKNQIAAPFKEANTQIMY 214


>gi|158263093|gb|ABW24323.1| RecA [Streptococcus oralis]
 gi|158263095|gb|ABW24324.1| RecA [Streptococcus oralis]
          Length = 251

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 159/245 (64%), Positives = 200/245 (81%), Gaps = 4/245 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGSTQIKGTGDQKDTSVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISRTG 240

Query: 281 ELIDL 285
           EL+ +
Sbjct: 241 ELLKI 245


>gi|115485181|ref|NP_001067734.1| Os11g0302700 [Oryza sativa Japonica Group]
 gi|62732800|gb|AAX94919.1| recA protein, putative [Oryza sativa Japonica Group]
 gi|77550150|gb|ABA92947.1| recA protein, expressed [Oryza sativa Japonica Group]
 gi|113644956|dbj|BAF28097.1| Os11g0302700 [Oryza sativa Japonica Group]
 gi|125576944|gb|EAZ18166.1| hypothetical protein OsJ_33715 [Oryza sativa Japonica Group]
 gi|215707257|dbj|BAG93717.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 430

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 173/336 (51%), Positives = 243/336 (72%), Gaps = 5/336 (1%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           D   E NI  K  AL+ AL QI+  +G+ +IM L       E + V+S+GS  LD+ALGI
Sbjct: 58  DGYSEANIKKKDFALQQALDQIKSAFGEESIMWLNHSYGPKE-VPVISTGSFALDMALGI 116

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG PKGR+VEIYGPE+SGKTTLALH IA++QK GG CAF+DAEHALD   A  +GV  ++
Sbjct: 117 GGLPKGRVVEIYGPEASGKTTLALHIIAEAQKNGGYCAFIDAEHALDPTLAESIGVKAEH 176

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPD GEQAL + D+L+RSG++D++V+DSVAAL P+ E++G+MG++   +QARLMSQ
Sbjct: 177 LLLSQPDCGEQALGLADILIRSGSIDVVVVDSVAALVPKTELDGEMGDAHVALQARLMSQ 236

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVM--FGSP-ETTTGGNALKFYSSVRLDIRRVGS 238
           ALRKL+ S+SRS+ +LVFINQ+R K+     FG+P E T GGNALKFY+SVRL+ +R+G 
Sbjct: 237 ALRKLSHSLSRSRTMLVFINQVRSKLSTFSGFGAPAEVTCGGNALKFYASVRLNTKRIGL 296

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IK  + + G Q +VK+VKNK A PFK V  ++ +G+G+S   E+I++G K   + KSG +
Sbjct: 297 IKKSEEVVGTQIQVKIVKNKHAPPFKTVHLELEFGKGLSRELEIIEVGFKHKFITKSGVF 356

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
           +   GQ    G++  K +L EN  + E++ S+++++
Sbjct: 357 YHLNGQNF-HGKDALKCYLAENKNVLESLMSMIKES 391


>gi|158263007|gb|ABW24280.1| RecA [Streptococcus acidominimus]
          Length = 251

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 155/246 (63%), Positives = 203/246 (82%), Gaps = 4/246 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL +DIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLSIDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA+ LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAQALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G++G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GEIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVR+D+R    IK     KD+  G +T+VK+VKNK+A PFK+   +IMYG GIS  G
Sbjct: 181 FYASVRMDVRGNTQIKGSGDQKDTNVGKETKVKIVKNKVAPPFKEAVVEIMYGHGISQTG 240

Query: 281 ELIDLG 286
           EL+++G
Sbjct: 241 ELVEIG 246


>gi|268628523|gb|ACZ13660.1| DNA recombination protein [Photorhabdus temperata subsp.
           tasmaniensis]
 gi|268628525|gb|ACZ13661.1| DNA recombination protein [Photorhabdus temperata subsp.
           tasmaniensis]
 gi|268628527|gb|ACZ13662.1| DNA recombination protein [Photorhabdus temperata subsp.
           tasmaniensis]
 gi|268628529|gb|ACZ13663.1| DNA recombination protein [Photorhabdus temperata subsp. khanii]
 gi|268628531|gb|ACZ13664.1| DNA recombination protein [Photorhabdus temperata subsp. khanii]
 gi|268628533|gb|ACZ13665.1| DNA recombination protein [Photorhabdus temperata subsp. khanii
           NC19]
 gi|268628541|gb|ACZ13669.1| DNA recombination protein [Photorhabdus temperata subsp.
           thracensis]
 gi|268628543|gb|ACZ13670.1| DNA recombination protein [Photorhabdus temperata subsp.
           thracensis]
 gi|268628549|gb|ACZ13673.1| DNA recombination protein [Photorhabdus sp. Q614]
          Length = 215

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 153/215 (71%), Positives = 187/215 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++
Sbjct: 61  DPVYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKSSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           SVRLDIRR+GS+K+ + + G++TRVKVVKNK+A+P
Sbjct: 181 SVRLDIRRIGSVKNGEEVVGSETRVKVVKNKVAAP 215


>gi|158263013|gb|ABW24283.1| RecA [Streptococcus australis]
          Length = 251

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 159/245 (64%), Positives = 200/245 (81%), Gaps = 4/245 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+
Sbjct: 61  HALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAMVEIMYGEGISRTG 240

Query: 281 ELIDL 285
           EL+ +
Sbjct: 241 ELLKI 245


>gi|158263161|gb|ABW24357.1| RecA [Streptococcus suis]
          Length = 251

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 157/246 (63%), Positives = 201/246 (81%), Gaps = 4/246 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL +DIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLSIDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKDGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL +SI+++K + +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVR+D+R    IK     KD   G +T+VK+VKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRMDVRGNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTG 240

Query: 281 ELIDLG 286
           ELI++G
Sbjct: 241 ELIEIG 246


>gi|11245063|gb|AAG33433.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 155/230 (67%), Positives = 191/230 (83%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL    DTGEQALEI D L RSG VD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLGFSADTGEQALEICDALARSGRVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRL  RR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLGYRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGV
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGV 230


>gi|158263073|gb|ABW24313.1| RecA [Streptococcus oligofermentans]
 gi|158263075|gb|ABW24314.1| RecA [Streptococcus oralis]
 gi|158263077|gb|ABW24315.1| RecA [Streptococcus oralis ATCC 35037]
 gi|158263079|gb|ABW24316.1| RecA [Streptococcus oralis]
 gi|158263081|gb|ABW24317.1| RecA [Streptococcus oralis]
 gi|158263083|gb|ABW24318.1| RecA [Streptococcus oralis]
 gi|158263085|gb|ABW24319.1| RecA [Streptococcus oralis]
 gi|158263087|gb|ABW24320.1| RecA [Streptococcus oralis]
 gi|158263089|gb|ABW24321.1| RecA [Streptococcus oralis]
 gi|158263091|gb|ABW24322.1| RecA [Streptococcus oralis]
 gi|158263097|gb|ABW24325.1| RecA [Streptococcus oralis]
 gi|315189790|gb|ADT89739.1| RecA protein [Streptococcus oralis]
 gi|315189792|gb|ADT89740.1| RecA protein [Streptococcus oralis]
 gi|315189794|gb|ADT89741.1| RecA protein [Streptococcus oralis]
 gi|315189798|gb|ADT89743.1| RecA protein [Streptococcus oralis]
 gi|315189800|gb|ADT89744.1| RecA protein [Streptococcus oralis]
 gi|315189802|gb|ADT89745.1| RecA protein [Streptococcus oralis]
 gi|315189804|gb|ADT89746.1| RecA protein [Streptococcus oralis]
 gi|315189806|gb|ADT89747.1| RecA protein [Streptococcus oralis]
 gi|315189808|gb|ADT89748.1| RecA protein [Streptococcus oralis]
 gi|315189810|gb|ADT89749.1| RecA protein [Streptococcus oralis]
          Length = 251

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 159/245 (64%), Positives = 200/245 (81%), Gaps = 4/245 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGSTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTG 240

Query: 281 ELIDL 285
           EL+ +
Sbjct: 241 ELLKI 245


>gi|260654226|ref|ZP_05859716.1| protein RecA [Jonquetella anthropi E3_33 E1]
 gi|260630859|gb|EEX49053.1| protein RecA [Jonquetella anthropi E3_33 E1]
          Length = 373

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 157/320 (49%), Positives = 236/320 (73%), Gaps = 4/320 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K + L  A+ +I+  +G+G+IM+LG   +I    +V+S+G L LD+ALG+GG P+GRIVE
Sbjct: 10  KEEVLTQAIDEIRSKFGEGSIMRLGDNKAI--QADVISTGILPLDVALGVGGLPRGRIVE 67

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPE +GKTTLALH IA++Q +GG  AF+DAEHALD   A  LGVD+++L ++QPD+GE
Sbjct: 68  IFGPEGTGKTTLALHAIAETQASGGIAAFIDAEHALDPRLAAALGVDVESLYLAQPDSGE 127

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL I + LVRS AVD++V+DSVAALTP+AEI+G +G+   G+QARLMS  LR+LT++I+
Sbjct: 128 QALYILETLVRSSAVDMVVVDSVAALTPQAEIDGQIGDPSVGLQARLMSYGLRRLTAAIA 187

Query: 192 RSKCILVFINQMRMKI--GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +S+CI++FINQ+R  I  G   G  ETTTGG ALKFY+SVR+++RR  +I   +   G++
Sbjct: 188 KSRCIVIFINQLRATISTGYARGPQETTTGGRALKFYTSVRIEVRRGKNITKGEETIGHE 247

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
             +KVVKNK+A PF+     ++YG+G+     ++D+ + A+I+ + G+W ++KG+ + QG
Sbjct: 248 LFIKVVKNKLAPPFRTAHASLIYGQGVPKTMAVVDMSMDANILKRKGSWVTYKGETIAQG 307

Query: 310 RENSKIFLRENIEIAENIES 329
           +E    +L E+ ++ E I++
Sbjct: 308 KEKVAAYLDEHPDLKEEIKA 327


>gi|323147049|gb|ADX32806.1| recombinase A [Burkholderia sp. 4682(2011)]
          Length = 229

 Score =  330 bits (845), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 160/215 (74%), Positives = 190/215 (88%), Gaps = 1/215 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AALSQI++ +GKG+IM+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 16  EKSKALAAALSQIEKQFGKGSIMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 74

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 75  EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYAGKLGVNVPELLISQPDTG 134

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 135 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 194

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKF
Sbjct: 195 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKF 229


>gi|268628545|gb|ACZ13671.1| DNA recombination protein [Photorhabdus asymbiotica subsp.
           asymbiotica]
 gi|268628547|gb|ACZ13672.1| DNA recombination protein [Photorhabdus asymbiotica subsp.
           australis]
          Length = 215

 Score =  330 bits (845), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 153/215 (71%), Positives = 187/215 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++
Sbjct: 61  DPVYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKSSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           SVRLDIRR+GS+K+ + + G++TRVKVVKNK+A+P
Sbjct: 181 SVRLDIRRIGSVKNGEEVIGSETRVKVVKNKVAAP 215


>gi|315189788|gb|ADT89738.1| RecA protein [Streptococcus mitis]
          Length = 251

 Score =  330 bits (845), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 159/245 (64%), Positives = 200/245 (81%), Gaps = 4/245 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRIVEIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGSGGYPKGRIVEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAIVEIMYGEGISKTG 240

Query: 281 ELIDL 285
           EL+ +
Sbjct: 241 ELLKI 245


>gi|262112776|emb|CBA73260.1| RecA protein [Burkholderia sp. JPY321]
          Length = 207

 Score =  330 bits (845), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 153/207 (73%), Positives = 183/207 (88%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  
Sbjct: 1   GGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPE 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQ
Sbjct: 61  LLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT +I ++ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK 
Sbjct: 121 ALRKLTGTIKKTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKK 180

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEF 268
            D + G++TRVKVVKNK++ PF++  F
Sbjct: 181 NDEVIGSETRVKVVKNKVSPPFREAVF 207


>gi|255546127|ref|XP_002514123.1| DNA repair protein reca, putative [Ricinus communis]
 gi|223546579|gb|EEF48077.1| DNA repair protein reca, putative [Ricinus communis]
          Length = 380

 Score =  330 bits (845), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 185/354 (52%), Positives = 249/354 (70%), Gaps = 16/354 (4%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I   YGKGAIM  G   +  + + VVS+GS  LD+ALG GG PKGR+VEIYGPE+SGKTT
Sbjct: 29  ITSAYGKGAIMWFGRSIAP-KDVPVVSTGSFALDVALGTGGLPKGRVVEIYGPEASGKTT 87

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALH IA++QK GG C FVDAEHALDS  A+ +GV+ +NLL+SQPD GEQAL + D L+R
Sbjct: 88  LALHVIAEAQKQGGYCVFVDAEHALDSSLAQSIGVNTENLLLSQPDCGEQALSLVDTLIR 147

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG+VD++V+DSVAAL P+ E++G+MG++   MQARLMSQALRKL+ S+S+S+ +L+FINQ
Sbjct: 148 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSQSETVLIFINQ 207

Query: 203 MRMKIGVM--FGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           +R K+     FG P E T GGNALKFY+SVRL+IRRVG IK  +   G+Q +VK+VKNK+
Sbjct: 208 VRAKLSTFGGFGGPQEVTCGGNALKFYASVRLNIRRVGLIKKGEETIGSQVQVKIVKNKL 267

Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
           A PFK V+F++ +G+GI    E+++LGVK   + K+G+++++ GQ    G+E  + FL E
Sbjct: 268 APPFKTVQFELEFGKGICRDSEIMELGVKHKFLGKAGSFYNYNGQNF-HGKEAFRKFLAE 326

Query: 320 NIEIAENIESLLRQ---NAGL-------VADSLLQEPAINTKDDADKDDTDNVE 363
           N    E +   LR+   NA +       V D  L E  I + D  D++    VE
Sbjct: 327 NDNAREELVMKLREKLLNAHIDKGQGSEVTDEALVEETI-SPDSTDEEAVTAVE 379


>gi|315189796|gb|ADT89742.1| RecA protein [Streptococcus oralis]
          Length = 251

 Score =  329 bits (844), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 159/245 (64%), Positives = 200/245 (81%), Gaps = 4/245 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGSTQIKGTGDQKDTNIGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTG 240

Query: 281 ELIDL 285
           EL+ +
Sbjct: 241 ELLKI 245


>gi|268628197|gb|ACZ13497.1| DNA recombination protein [Xenorhabdus ehlersii]
 gi|268628199|gb|ACZ13498.1| DNA recombination protein [Xenorhabdus griffiniae]
 gi|268628201|gb|ACZ13499.1| DNA recombination protein [Xenorhabdus japonica]
 gi|268628203|gb|ACZ13500.1| DNA recombination protein [Xenorhabdus vietnamensis]
 gi|268628221|gb|ACZ13509.1| DNA recombination protein [Xenorhabdus hominickii]
 gi|268628223|gb|ACZ13510.1| DNA recombination protein [Xenorhabdus hominickii]
 gi|268628225|gb|ACZ13511.1| DNA recombination protein [Xenorhabdus hominickii]
 gi|268628229|gb|ACZ13513.1| DNA recombination protein [Xenorhabdus miraniensis]
 gi|268628231|gb|ACZ13514.1| DNA recombination protein [Xenorhabdus beddingii]
 gi|268628235|gb|ACZ13516.1| DNA recombination protein [Xenorhabdus mauleonii]
          Length = 215

 Score =  329 bits (844), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 154/215 (71%), Positives = 186/215 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGRTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++
Sbjct: 61  DPVYAKKLGVDIDNLLCSQPDTGEQALEICDALSRSGAVDVIIVDSVAALTPKAEIEGEI 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           SVRLDIRR GS+K+ D + G++TRVKVVKNK+A+P
Sbjct: 181 SVRLDIRRTGSVKNGDEVVGSETRVKVVKNKVAAP 215


>gi|162955836|gb|ABY25293.1| recombinant DNA repair protein [Vibrio sp. MSSRF7]
          Length = 214

 Score =  329 bits (844), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 151/211 (71%), Positives = 185/211 (87%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 4   VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGVD+ +LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE
Sbjct: 64  HALDPVYAKKLGVDIDSLLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 124 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 183

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           FY+SVRLDIRR GSIK+ D + GN+TR+KVV
Sbjct: 184 FYASVRLDIRRTGSIKEGDEVVGNETRIKVV 214


>gi|158262814|gb|ABW24184.1| RecA [Streptococcus mitis]
 gi|158263057|gb|ABW24305.1| RecA [Streptococcus mitis]
 gi|158263059|gb|ABW24306.1| RecA [Streptococcus mitis]
 gi|158263061|gb|ABW24307.1| RecA [Streptococcus mitis]
 gi|158263065|gb|ABW24309.1| RecA [Streptococcus mitis]
 gi|158263067|gb|ABW24310.1| RecA [Streptococcus mitis]
 gi|158263069|gb|ABW24311.1| RecA [Streptococcus mitis]
 gi|315189752|gb|ADT89720.1| RecA protein [Streptococcus mitis]
 gi|315189756|gb|ADT89722.1| RecA protein [Streptococcus mitis]
 gi|315189758|gb|ADT89723.1| RecA protein [Streptococcus mitis]
 gi|315189760|gb|ADT89724.1| RecA protein [Streptococcus mitis]
 gi|315189762|gb|ADT89725.1| RecA protein [Streptococcus mitis]
 gi|315189764|gb|ADT89726.1| RecA protein [Streptococcus mitis]
 gi|315189766|gb|ADT89727.1| RecA protein [Streptococcus mitis]
 gi|315189768|gb|ADT89728.1| RecA protein [Streptococcus mitis]
 gi|315189770|gb|ADT89729.1| RecA protein [Streptococcus mitis]
 gi|315189774|gb|ADT89731.1| RecA protein [Streptococcus mitis]
 gi|315189776|gb|ADT89732.1| RecA protein [Streptococcus mitis]
 gi|315189778|gb|ADT89733.1| RecA protein [Streptococcus mitis]
 gi|315189780|gb|ADT89734.1| RecA protein [Streptococcus mitis]
 gi|315189782|gb|ADT89735.1| RecA protein [Streptococcus mitis]
 gi|315189784|gb|ADT89736.1| RecA protein [Streptococcus mitis]
 gi|315189786|gb|ADT89737.1| RecA protein [Streptococcus mitis]
          Length = 251

 Score =  329 bits (844), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 158/245 (64%), Positives = 200/245 (81%), Gaps = 4/245 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGSTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTG 240

Query: 281 ELIDL 285
           EL+ +
Sbjct: 241 ELLKI 245


>gi|268628215|gb|ACZ13506.1| DNA recombination protein [Xenorhabdus poinarii]
 gi|268628217|gb|ACZ13507.1| DNA recombination protein [Xenorhabdus poinarii]
 gi|268628219|gb|ACZ13508.1| DNA recombination protein [Xenorhabdus poinarii]
 gi|268628227|gb|ACZ13512.1| DNA recombination protein [Xenorhabdus koppenhoeferi]
          Length = 215

 Score =  329 bits (844), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 154/215 (71%), Positives = 186/215 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGRTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++
Sbjct: 61  DPVYAKKLGVDIDNLLCSQPDTGEQALEICDALSRSGAVDVIIVDSVAALTPKAEIEGEI 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           SVRLDIRR GS+K+ D + G++TRVKVVKNK+A+P
Sbjct: 181 SVRLDIRRTGSVKNGDEVIGSETRVKVVKNKVAAP 215


>gi|262112874|emb|CBA73411.1| RecA protein [Burkholderia sp. JPY452]
          Length = 207

 Score =  329 bits (843), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 153/207 (73%), Positives = 182/207 (87%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  
Sbjct: 1   GGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYAAKLGVNVPE 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQ
Sbjct: 61  LLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
            LRKLT +I ++ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK 
Sbjct: 121 ELRKLTGTIKKTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKK 180

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEF 268
            D + G++TRVKVVKNK++ PF++  F
Sbjct: 181 NDKVIGSETRVKVVKNKVSPPFREAVF 207


>gi|158263063|gb|ABW24308.1| RecA [Streptococcus mitis]
 gi|315189754|gb|ADT89721.1| RecA protein [Streptococcus mitis]
          Length = 251

 Score =  329 bits (843), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 158/243 (65%), Positives = 199/243 (81%), Gaps = 4/243 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGSTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTG 240

Query: 281 ELI 283
           EL+
Sbjct: 241 ELL 243


>gi|6694842|gb|AAF25427.1|AF214780_1 RecA protein [Arthrobacter globiformis]
          Length = 222

 Score =  329 bits (843), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 154/221 (69%), Positives = 186/221 (84%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA K
Sbjct: 2   LDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEYAAK 61

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           LGVD   LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEIEGDMG+S  G+
Sbjct: 62  LGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIEGDMGDSHVGL 121

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
           QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+R
Sbjct: 122 QARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVR 181

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275
           R+ ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+G
Sbjct: 182 RIQTLKEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQG 222


>gi|158263165|gb|ABW24359.1| RecA [Streptococcus urinalis 2285-97]
          Length = 251

 Score =  329 bits (843), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 156/245 (63%), Positives = 201/245 (82%), Gaps = 4/245 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKDGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++ +LL+SQPD+GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDDLLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K + +FINQ+R K+G+MFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTVAIFINQLREKVGIMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     +D   G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDQRDQNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISRTG 240

Query: 281 ELIDL 285
           EL+ +
Sbjct: 241 ELVKI 245


>gi|300089403|gb|ADJ67853.1| recombination repair protein [Photobacterium jeanii]
          Length = 216

 Score =  328 bits (842), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 153/215 (71%), Positives = 184/215 (85%)

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTG
Sbjct: 1   EIYGPESSGKTTLTLEAIACAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTG 60

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 61  EQALEICDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 120

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T
Sbjct: 121 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 180

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           R+KVVKNK+A+PFKQ E    +G+G    GELIDL
Sbjct: 181 RIKVVKNKVAAPFKQAETQFFHGQGFYRNGELIDL 215


>gi|291246084|gb|ADD85170.1| RecA [Borrelia duttonii]
          Length = 286

 Score =  328 bits (842), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 155/269 (57%), Positives = 212/269 (78%), Gaps = 2/269 (0%)

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEI+GPESSGKTTL L  IA+ QKTGG  AF+DAEHALD +YAR LGV++  L +SQ
Sbjct: 1   GRVVEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQ 60

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQAL+I + L+RSG VD+IV+DSVAALTP+AEI+G+MG++  G+QARLMS+ALRK+
Sbjct: 61  PDTGEQALDIAEYLIRSGGVDLIVVDSVAALTPQAEIDGEMGDTQIGLQARLMSKALRKI 120

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI--KDKDS 244
           T+ +S+S   ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V  +     D+
Sbjct: 121 TAILSKSNTCIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKVEQVIGSSSDN 180

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + GN+ RVKVVKNK+A PF++ E  + +G+GIS    ++D  +K ++V KSG+W++    
Sbjct: 181 VIGNKIRVKVVKNKVAPPFRKAELIVYFGKGISREASILDAAIKYNLVQKSGSWYAMGDD 240

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQ 333
            LGQGREN   +L +   +A  +E+ LR+
Sbjct: 241 NLGQGRENVIEYLFKEKALANELENKLRK 269


>gi|323147059|gb|ADX32811.1| recombinase A [endophytic bacterium 21(2011)]
          Length = 232

 Score =  328 bits (842), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 161/220 (73%), Positives = 197/220 (89%), Gaps = 1/220 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG++M+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 14  EKSKALAAALAQIEKQFGKGSVMRLGA-GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVV 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 73  EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPDTG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 133 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR
Sbjct: 193 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVR 232


>gi|315189820|gb|ADT89754.1| RecA protein [Streptococcus pneumoniae]
          Length = 251

 Score =  328 bits (842), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 157/245 (64%), Positives = 200/245 (81%), Gaps = 4/245 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     K++  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKEAAVEIMYGEGISKTG 240

Query: 281 ELIDL 285
           EL+ +
Sbjct: 241 ELLKI 245


>gi|323147069|gb|ADX32816.1| recombinase A [endophytic bacterium 20(2011)]
          Length = 235

 Score =  328 bits (842), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 161/220 (73%), Positives = 197/220 (89%), Gaps = 1/220 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG++M+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 17  EKSKALAAALAQIEKQFGKGSVMRLGA-GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVV 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 76  EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPDTG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 136 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR
Sbjct: 196 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVR 235


>gi|323147061|gb|ADX32812.1| recombinase A [endophytic bacterium 22(2011)]
          Length = 234

 Score =  328 bits (842), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 161/220 (73%), Positives = 197/220 (89%), Gaps = 1/220 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG++M+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 16  EKSKALAAALAQIEKQFGKGSVMRLGA-GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVV 74

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 75  EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPDTG 134

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 135 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 194

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR
Sbjct: 195 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVR 234


>gi|262272843|gb|ACY40641.1| RecA [Leptotrichia shahii]
          Length = 239

 Score =  328 bits (841), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 156/238 (65%), Positives = 199/238 (83%), Gaps = 3/238 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALGIGG P+GRIVEIYG ESSGKTTLALH IA++QK GGT AF+DAEHAL
Sbjct: 2   ISTGSLNLDIALGIGGVPRGRIVEIYGAESSGKTTLALHIIAEAQKAGGTVAFIDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+ LGV++  LLISQPDTGEQALEI+DMLVRSGA+D+IV+DSVAAL P+AEIEG+M
Sbjct: 62  DPVYAKALGVNIDELLISQPDTGEQALEISDMLVRSGAMDVIVVDSVAALVPKAEIEGEM 121

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP---ETTTGGNALK 224
           G+   G+QARLMS+ALRKLT +I++S  +++FINQ+R KIG    +P    TT+GG ALK
Sbjct: 122 GDQQMGLQARLMSKALRKLTGTIAKSDTVMIFINQIREKIGGFSFTPGPQTTTSGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           F+S+VR++++RVGS+K  D + GN+  VKV KNK+A PFK+  F++MYG+GIS  GE+
Sbjct: 182 FFSTVRMEVKRVGSVKQGDDVIGNEVLVKVTKNKVAPPFKEARFNVMYGQGISRIGEV 239


>gi|315189772|gb|ADT89730.1| RecA protein [Streptococcus mitis]
          Length = 251

 Score =  328 bits (841), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 157/245 (64%), Positives = 200/245 (81%), Gaps = 4/245 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++++SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQLMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGVAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGSTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTG 240

Query: 281 ELIDL 285
           EL+ +
Sbjct: 241 ELLKI 245


>gi|323147067|gb|ADX32815.1| recombinase A [endophytic bacterium 19(2011)]
          Length = 220

 Score =  328 bits (841), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 161/220 (73%), Positives = 197/220 (89%), Gaps = 1/220 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG++M+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 2   EKSKALAAALAQIEKQFGKGSVMRLGA-GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVV 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 61  EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 121 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR
Sbjct: 181 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVR 220


>gi|268628205|gb|ACZ13501.1| DNA recombination protein [Xenorhabdus doucetiae]
 gi|268628207|gb|ACZ13502.1| DNA recombination protein [Xenorhabdus romanii]
 gi|268628209|gb|ACZ13503.1| DNA recombination protein [Xenorhabdus kozodoii]
 gi|268628211|gb|ACZ13504.1| DNA recombination protein [Xenorhabdus kozodoii]
 gi|268628213|gb|ACZ13505.1| DNA recombination protein [Xenorhabdus kozodoii]
          Length = 215

 Score =  328 bits (841), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 153/215 (71%), Positives = 186/215 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGRTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++
Sbjct: 61  DPVYAKKLGVDIDNLLCSQPDTGEQALEICDALSRSGAVDVIIVDSVAALTPKAEIEGEI 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           SVRLDIRR GS+K+ + + G++TRVKVVKNK+A+P
Sbjct: 181 SVRLDIRRTGSVKNGEEVVGSETRVKVVKNKVAAP 215


>gi|158263137|gb|ABW24345.1| RecA [Streptococcus pseudopneumoniae]
 gi|158263139|gb|ABW24346.1| RecA [Streptococcus pseudopneumoniae ATCC BAA-960]
 gi|158263141|gb|ABW24347.1| RecA [Streptococcus pseudopneumoniae]
 gi|158263143|gb|ABW24348.1| RecA [Streptococcus pseudopneumoniae]
 gi|158263145|gb|ABW24349.1| RecA [Streptococcus pseudopneumoniae]
 gi|158263159|gb|ABW24356.1| RecA [Streptococcus pseudopneumoniae]
 gi|315189824|gb|ADT89756.1| RecA protein [Streptococcus pseudopneumoniae]
 gi|315189826|gb|ADT89757.1| RecA protein [Streptococcus pseudopneumoniae]
 gi|315189828|gb|ADT89758.1| RecA protein [Streptococcus pseudopneumoniae]
 gi|315189830|gb|ADT89759.1| RecA protein [Streptococcus pseudopneumoniae]
 gi|315189832|gb|ADT89760.1| RecA protein [Streptococcus pseudopneumoniae]
          Length = 251

 Score =  328 bits (840), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 157/245 (64%), Positives = 200/245 (81%), Gaps = 4/245 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     K++  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKETVVEIMYGEGISKTG 240

Query: 281 ELIDL 285
           EL+ +
Sbjct: 241 ELLKI 245


>gi|158262821|gb|ABW24187.1| RecA [Streptococcus pneumoniae]
 gi|158263107|gb|ABW24330.1| RecA [Streptococcus pneumoniae]
 gi|158263109|gb|ABW24331.1| RecA [Streptococcus pneumoniae]
 gi|158263113|gb|ABW24333.1| RecA [Streptococcus pneumoniae]
 gi|158263115|gb|ABW24334.1| RecA [Streptococcus pneumoniae]
 gi|158263117|gb|ABW24335.1| RecA [Streptococcus pneumoniae]
 gi|158263119|gb|ABW24336.1| RecA [Streptococcus pneumoniae]
 gi|158263123|gb|ABW24338.1| RecA [Streptococcus pneumoniae]
 gi|158263125|gb|ABW24339.1| RecA [Streptococcus pneumoniae]
 gi|158263127|gb|ABW24340.1| RecA [Streptococcus pneumoniae]
 gi|158263129|gb|ABW24341.1| RecA [Streptococcus pneumoniae]
 gi|158263131|gb|ABW24342.1| RecA [Streptococcus pneumoniae]
 gi|158263135|gb|ABW24344.1| RecA [Streptococcus pneumoniae]
 gi|315189812|gb|ADT89750.1| RecA protein [Streptococcus pneumoniae]
 gi|315189814|gb|ADT89751.1| RecA protein [Streptococcus pneumoniae]
 gi|315189818|gb|ADT89753.1| RecA protein [Streptococcus pneumoniae]
 gi|315189822|gb|ADT89755.1| RecA protein [Streptococcus pneumoniae]
          Length = 251

 Score =  328 bits (840), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 157/245 (64%), Positives = 200/245 (81%), Gaps = 4/245 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     K++  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTG 240

Query: 281 ELIDL 285
           EL+ +
Sbjct: 241 ELLKI 245


>gi|290795149|gb|ADD64589.1| RecA recombinase [Vibrio sp. FAL1267]
          Length = 220

 Score =  328 bits (840), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 156/222 (70%), Positives = 189/222 (85%), Gaps = 2/222 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D
Sbjct: 59  IAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAID 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           GVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNE 220


>gi|323147051|gb|ADX32807.1| recombinase A [Burkholderia sp. 4683(2011)]
          Length = 224

 Score =  328 bits (840), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 159/214 (74%), Positives = 189/214 (88%), Gaps = 1/214 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AALSQI++ +GKG+IM+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 12  EKSKALAAALSQIEKQFGKGSIMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 70

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 71  EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYAGKLGVNVPELLISQPDTG 130

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 131 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 190

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 191 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALK 224


>gi|326528635|dbj|BAJ97339.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 429

 Score =  328 bits (840), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 182/336 (54%), Positives = 245/336 (72%), Gaps = 11/336 (3%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLG-SQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           E N+  K  AL  A+ QI   +GKGAIM LG S+G     + VVS+GS  LD+ALGIGG 
Sbjct: 56  EENMSKKDLALHQAIDQITTSFGKGAIMWLGRSEG--HREVPVVSTGSFSLDLALGIGGL 113

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKT--GGTCAFVDAEHALDSIYARKLGVDLKNL 122
           PKGR++E+YGPE+SGKTTLALH IA++QK   GG CAFVDAEHALD   A  +GVD  NL
Sbjct: 114 PKGRVIEVYGPEASGKTTLALHVIAEAQKLSGGGYCAFVDAEHALDPTLAESIGVDTSNL 173

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           L+SQPD+ EQAL + D L+RSG+VD++V+DSVAAL P+ E++G+MG++   +QARLMSQA
Sbjct: 174 LLSQPDSAEQALSLVDTLIRSGSVDVVVVDSVAALVPKTELDGEMGDAHVALQARLMSQA 233

Query: 183 LRKLTSSISRSKCILVFINQMRMKI---GVMFGSP-ETTTGGNALKFYSSVRLDIRRVGS 238
           LRKL+ S+S S+ +L+FINQ+R K+   G  FG P E T+GGNALKFY+SVRL+IRR+G 
Sbjct: 234 LRKLSHSLSLSQTVLLFINQIRSKVQTFGGGFGGPQEVTSGGNALKFYASVRLNIRRIGM 293

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS-GA 297
           +K  + I G+Q  VK+VKNK A PF+  +F++ +G+GI    EL +LG+K  +V K+ GA
Sbjct: 294 VKKGEEIIGSQVTVKIVKNKHAPPFRTAQFELEFGKGICRSSELFELGLKHKLVKKTGGA 353

Query: 298 WFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           ++SF  Q+   G++  K FL +N   A+ +E  LR+
Sbjct: 354 YYSFNEQQF-HGKDAVKSFLTKNEGAAKELEMELRR 388


>gi|267798493|gb|ACY78927.1| recombinase A [Vibrio cholerae]
          Length = 224

 Score =  327 bits (839), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 153/225 (68%), Positives = 192/225 (85%), Gaps = 2/225 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L 
Sbjct: 2   FGKGSIMRLGDNRAL--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLE 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAV
Sbjct: 60  LIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 120 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR
Sbjct: 180 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETR 224


>gi|262112870|emb|CBA73405.1| RecA protein [Burkholderia sp. JPY441]
 gi|262112940|emb|CBA73518.1| RecA protein [Burkholderia sp. JPY629]
          Length = 207

 Score =  327 bits (838), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 152/207 (73%), Positives = 182/207 (87%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA +LGV++  
Sbjct: 1   GGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYAAQLGVNVPE 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARL SQ
Sbjct: 61  LLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLWSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT +I ++ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK 
Sbjct: 121 ALRKLTGTIKKTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKK 180

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEF 268
            D + G++TRVKVVKNK++ PF++  F
Sbjct: 181 NDEVIGSETRVKVVKNKVSPPFREAVF 207


>gi|267798477|gb|ACY78919.1| recombinase A [Vibrio cholerae]
 gi|267798481|gb|ACY78921.1| recombinase A [Vibrio cholerae]
 gi|267798483|gb|ACY78922.1| recombinase A [Vibrio cholerae]
 gi|267798485|gb|ACY78923.1| recombinase A [Vibrio cholerae]
 gi|267798487|gb|ACY78924.1| recombinase A [Vibrio cholerae]
 gi|267798489|gb|ACY78925.1| recombinase A [Vibrio cholerae]
 gi|267798491|gb|ACY78926.1| recombinase A [Vibrio cholerae]
 gi|267798495|gb|ACY78928.1| recombinase A [Vibrio cholerae]
 gi|267798497|gb|ACY78929.1| recombinase A [Vibrio cholerae]
 gi|267798499|gb|ACY78930.1| recombinase A [Vibrio cholerae]
 gi|267798503|gb|ACY78932.1| recombinase A [Vibrio cholerae]
 gi|267798505|gb|ACY78933.1| recombinase A [Vibrio cholerae]
 gi|267798507|gb|ACY78934.1| recombinase A [Vibrio cholerae]
 gi|267798509|gb|ACY78935.1| recombinase A [Vibrio cholerae]
          Length = 224

 Score =  327 bits (838), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 153/225 (68%), Positives = 192/225 (85%), Gaps = 2/225 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L 
Sbjct: 2   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLE 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAV
Sbjct: 60  LIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 120 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR
Sbjct: 180 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETR 224


>gi|6694804|gb|AAF25389.1|AF214742_1 RecA protein [Arthrobacter sp. 'SMCC G980']
          Length = 222

 Score =  327 bits (838), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 152/221 (68%), Positives = 186/221 (84%)

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
           +ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLG
Sbjct: 1   VALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHALDPEYAAKLG 60

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           VD   LL+SQPDTGEQALEI DML+ SG++D+IVIDSVAAL PRAEIEGDMG+S  G+QA
Sbjct: 61  VDTDALLVSQPDTGEQALEIMDMLIGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQA 120

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           RLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+
Sbjct: 121 RLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRI 180

Query: 237 GSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277
            ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS
Sbjct: 181 QTLKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQGIS 221


>gi|267798479|gb|ACY78920.1| recombinase A [Vibrio cholerae]
          Length = 224

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 153/225 (68%), Positives = 192/225 (85%), Gaps = 2/225 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L 
Sbjct: 2   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLE 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAV
Sbjct: 60  LIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 120 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR
Sbjct: 180 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEDVVGNETR 224


>gi|6694846|gb|AAF25431.1|AF214784_1 RecA protein [Arthrobacter nicotinovorans]
          Length = 222

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 154/221 (69%), Positives = 186/221 (84%)

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
           +ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLG
Sbjct: 1   VALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPDYAAKLG 60

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           VD   LL+SQPDTGEQALEI DMLV SG++DIIVIDSVAAL PRAEIEG+MG+S  G+QA
Sbjct: 61  VDTDALLVSQPDTGEQALEIMDMLVGSGSLDIIVIDSVAALVPRAEIEGEMGDSHVGLQA 120

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           RLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+
Sbjct: 121 RLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRI 180

Query: 237 GSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277
            ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS
Sbjct: 181 QTLKEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQGIS 221


>gi|158263121|gb|ABW24337.1| RecA [Streptococcus pneumoniae]
 gi|158263133|gb|ABW24343.1| RecA [Streptococcus pneumoniae]
 gi|315189816|gb|ADT89752.1| RecA protein [Streptococcus pneumoniae]
          Length = 251

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 156/245 (63%), Positives = 200/245 (81%), Gaps = 4/245 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G++  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDNHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     K++  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTG 240

Query: 281 ELIDL 285
           EL+ +
Sbjct: 241 ELLKI 245


>gi|312879352|ref|ZP_07739152.1| RecA protein [Aminomonas paucivorans DSM 12260]
 gi|310782643|gb|EFQ23041.1| RecA protein [Aminomonas paucivorans DSM 12260]
          Length = 376

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 162/332 (48%), Positives = 234/332 (70%), Gaps = 6/332 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K+   + +   L+ A+ +I+  +G GAIM+LG Q       +V+ +G L LD+ALGIGG 
Sbjct: 3   KKKEALTREDVLDQAIDEIRAKFGDGAIMRLGEQAKAC--ADVIPTGILPLDVALGIGGI 60

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GR+VEI+GPE +GKTTLALH IA++QK GG  AF+DAEHALD   A  +GVD   L +
Sbjct: 61  PRGRVVEIFGPEGTGKTTLALHAIAEAQKAGGIAAFIDAEHALDPRLAAAVGVDTAALYL 120

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP-GMQARLMSQAL 183
           SQPD+GEQAL I D LVRSGAVD++V+DSVAALTP+AEI+G MGE    G+QARLMS AL
Sbjct: 121 SQPDSGEQALYILDTLVRSGAVDLVVVDSVAALTPQAEIDGKMGEGTQVGLQARLMSYAL 180

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMF--GSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           R+LT++IS+S+  + FINQ+R +I   +  G  ETTTGG ALKFYSSVR++++R  ++  
Sbjct: 181 RRLTAAISKSRTTVAFINQLRAQISTGYSQGPQETTTGGRALKFYSSVRIEVKRGKAVTQ 240

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            +   G++  ++VVKNK A PF+     ++YG+G+     ++D+ +   +V + G+W ++
Sbjct: 241 GEETIGHELWIRVVKNKQAPPFRGAHTTLIYGKGVPKAMSVLDMALDHEVVKRKGSWLAY 300

Query: 302 KGQRLGQGRENSKIFLRENIEIAENI-ESLLR 332
           KG+ LGQG+E+   +L E+ E+ + I + +LR
Sbjct: 301 KGETLGQGKESVSHYLSEHPELMDEITQDVLR 332


>gi|83319502|ref|YP_424522.1| recombinase A [Mycoplasma capricolum subsp. capricolum ATCC 27343]
 gi|83283388|gb|ABC01320.1| recA protein [Mycoplasma capricolum subsp. capricolum ATCC 27343]
          Length = 328

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 161/298 (54%), Positives = 225/298 (75%), Gaps = 2/298 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SK L+ A+ +I++++GKG+IM LG   ++   +E  SSGSL LD ALGIGG+PKGRI+EI
Sbjct: 4   SKELKEAIKEIEKMFGKGSIMVLGQSDNL--NVETFSSGSLLLDNALGIGGYPKGRIIEI 61

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL+LH I + QK GG  AF+DAEH+LD  Y   LG+D   LL+SQPD GEQ
Sbjct: 62  YGPESSGKTTLSLHAICEIQKLGGIAAFIDAEHSLDPKYCHNLGIDTNKLLVSQPDNGEQ 121

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           AL+I +ML+ S ++D+I++DSVAAL P+ E+EG+M +   G+QAR+MS+ALRKL   I++
Sbjct: 122 ALDILEMLINSNSIDLIIVDSVAALVPKTELEGEMSDQSIGLQARMMSKALRKLNGLIAK 181

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           S   ++FINQ+R KIGV+FG+PETTTGG ALKF+SS+RL++R+  +I     I GN+ ++
Sbjct: 182 SNTTVIFINQLREKIGVIFGNPETTTGGKALKFFSSIRLEVRKSENILSNSEIIGNKIKI 241

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           K+VKNK A PFK     ++Y +GI   GEL+DL V   I++KSG W+ ++ +++GQG+
Sbjct: 242 KIVKNKTAIPFKTATISLLYNKGIDKIGELVDLLVSYEIIEKSGVWYFYQNEKIGQGK 299


>gi|262272845|gb|ACY40642.1| RecA [Leptotrichia wadei]
          Length = 239

 Score =  327 bits (837), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 155/238 (65%), Positives = 198/238 (83%), Gaps = 3/238 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG+GG P+GRI+EIYG ESSGKTTLALH IA++QK GGT AF+DAEHAL
Sbjct: 2   ISTGSLNLDIALGVGGVPRGRIIEIYGAESSGKTTLALHIIAEAQKAGGTVAFIDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+ LGV++  LLISQPDTGEQALEI+DMLVRSGA+D+IV+DSVAAL P+AEIEG+M
Sbjct: 62  DPVYAKALGVNIDELLISQPDTGEQALEISDMLVRSGAMDVIVVDSVAALVPKAEIEGEM 121

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP---ETTTGGNALK 224
           G+   G+QARLMS+ALRKLT SI++S  +++FINQ+R KIG    +P    TT+GG ALK
Sbjct: 122 GDQQMGLQARLMSKALRKLTGSIAKSDTVMIFINQIREKIGGFSFTPGPQTTTSGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           F+S+VR++++RVGS+K  D + GN+  VKV KNK+A PF++  F+IMYG GIS  GE+
Sbjct: 182 FFSTVRMEVKRVGSVKQGDDVIGNEILVKVTKNKVAPPFREARFNIMYGTGISRIGEV 239


>gi|323147073|gb|ADX32818.1| recombinase A [endophytic bacterium 26(2011)]
          Length = 232

 Score =  326 bits (836), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 160/219 (73%), Positives = 196/219 (89%), Gaps = 1/219 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG++M+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 15  EKSKALAAALAQIEKQFGKGSVMRLGA-GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVV 73

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 74  EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPDTG 133

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 134 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 193

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SV
Sbjct: 194 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASV 232


>gi|267798501|gb|ACY78931.1| recombinase A [Vibrio cholerae]
          Length = 224

 Score =  326 bits (836), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 153/225 (68%), Positives = 191/225 (84%), Gaps = 2/225 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG    +   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L 
Sbjct: 2   FGKGSIMRLGDNRPM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLE 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAV
Sbjct: 60  LIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 120 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR
Sbjct: 180 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETR 224


>gi|298955415|gb|ADI99992.1| RecA [Bacillus megaterium]
          Length = 241

 Score =  326 bits (835), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 152/241 (63%), Positives = 196/241 (81%)

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           + GG  AF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI + LVRSGAVDIIV+D
Sbjct: 1   QQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVD 60

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I++SK I +FI Q+R K+GVMFG
Sbjct: 61  SVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAINKSKTIAIFIKQIREKVGVMFG 120

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETT GG ALKFYSSVRL++RR   +K  + I GN+TR+KVVKNK+A P++  E DIMY
Sbjct: 121 NPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIVGNKTRIKVVKNKVAPPYRAAEVDIMY 180

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           GEGIS  GE++D+  +  IV KSG+W+S+  +RLGQGREN+K FL+EN +I + I   +R
Sbjct: 181 GEGISKEGEILDIASELDIVQKSGSWYSYNDERLGQGRENAKQFLKENTDIRQEIAGQVR 240

Query: 333 Q 333
           +
Sbjct: 241 E 241


>gi|323147075|gb|ADX32819.1| recombinase A [endophytic bacterium 27(2011)]
          Length = 231

 Score =  325 bits (832), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 159/218 (72%), Positives = 195/218 (89%), Gaps = 1/218 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG++M+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 15  EKSKALAAALAQIEKQFGKGSVMRLGA-GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVV 73

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 74  EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPDTG 133

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 134 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 193

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+S
Sbjct: 194 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYAS 231


>gi|158263111|gb|ABW24332.1| RecA [Streptococcus pneumoniae]
          Length = 251

 Score =  324 bits (831), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 156/245 (63%), Positives = 199/245 (81%), Gaps = 4/245 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIAL  GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALCSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     K++  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTG 240

Query: 281 ELIDL 285
           EL+ +
Sbjct: 241 ELLKI 245


>gi|156902072|gb|ABU96829.1| RecA protein [Vibrio cholerae]
          Length = 214

 Score =  324 bits (831), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 147/211 (69%), Positives = 184/211 (87%)

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQ
Sbjct: 1   GRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQ 60

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKL
Sbjct: 61  PDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKL 120

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + 
Sbjct: 121 TGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVV 180

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277
           GN+TR+KVVKNK+A+PFK+    IMYG+G +
Sbjct: 181 GNETRIKVVKNKIAAPFKEANTQIMYGQGFN 211


>gi|32481310|gb|AAP84003.1| catalase [Vibrio cholerae]
          Length = 210

 Score =  324 bits (831), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 147/209 (70%), Positives = 183/209 (87%)

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQ
Sbjct: 2   GRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQ 61

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKL
Sbjct: 62  PDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKL 121

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + 
Sbjct: 122 TGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVV 181

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEG 275
           GN+TR+KVVKNK+A+PFK+    IMYG+G
Sbjct: 182 GNETRIKVVKNKIAAPFKEANTQIMYGQG 210


>gi|225444891|ref|XP_002279464.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 432

 Score =  324 bits (831), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 180/332 (54%), Positives = 236/332 (71%), Gaps = 6/332 (1%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N+  K  AL  AL QI   +GKG+IM LG   S  + + VVS+GS  LDI LGIGG P
Sbjct: 63  EENLSKKELALRQALDQITTSFGKGSIMWLGRSVSS-KHVPVVSTGSFALDIVLGIGGLP 121

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR+VEIYGPE+SGKTTLALH IA++QK GG C FVDAEHALD   A  +GV+ +NLL+S
Sbjct: 122 KGRVVEIYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDPALAEAIGVNTQNLLLS 181

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQAL + D L+RSG+VD++V+DSVAAL P+ E++G+MG++   MQARLMSQALRK
Sbjct: 182 QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRK 241

Query: 186 LTSSISRSKCILVFINQMRMKIGVM--FGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           L+ S+S S+ IL+FINQ+R K+     FG P E T GGNALKFY+SVRL+I+R+G +K  
Sbjct: 242 LSHSLSLSQTILIFINQVRAKLSTFGGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 301

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK-SGAWFSF 301
           +   G+Q  VKVVKNK A PFK  +F++ +G+GI    E+++LG K   + K  GA +S+
Sbjct: 302 EETIGSQVLVKVVKNKHAPPFKTAQFELEFGKGICRESEIVELGCKHKFIIKGGGAMYSY 361

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
            GQ   +G++  K FL +N    E +   LR+
Sbjct: 362 NGQSF-RGKDAIKQFLSQNESEREELMRKLRE 392


>gi|297738654|emb|CBI27899.3| unnamed protein product [Vitis vinifera]
          Length = 421

 Score =  324 bits (831), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 180/332 (54%), Positives = 236/332 (71%), Gaps = 6/332 (1%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N+  K  AL  AL QI   +GKG+IM LG   S  + + VVS+GS  LDI LGIGG P
Sbjct: 52  EENLSKKELALRQALDQITTSFGKGSIMWLGRSVSS-KHVPVVSTGSFALDIVLGIGGLP 110

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR+VEIYGPE+SGKTTLALH IA++QK GG C FVDAEHALD   A  +GV+ +NLL+S
Sbjct: 111 KGRVVEIYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDPALAEAIGVNTQNLLLS 170

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQAL + D L+RSG+VD++V+DSVAAL P+ E++G+MG++   MQARLMSQALRK
Sbjct: 171 QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRK 230

Query: 186 LTSSISRSKCILVFINQMRMKIGVM--FGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           L+ S+S S+ IL+FINQ+R K+     FG P E T GGNALKFY+SVRL+I+R+G +K  
Sbjct: 231 LSHSLSLSQTILIFINQVRAKLSTFGGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 290

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS-IVDKSGAWFSF 301
           +   G+Q  VKVVKNK A PFK  +F++ +G+GI    E+++LG K   I+   GA +S+
Sbjct: 291 EETIGSQVLVKVVKNKHAPPFKTAQFELEFGKGICRESEIVELGCKHKFIIKGGGAMYSY 350

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
            GQ   +G++  K FL +N    E +   LR+
Sbjct: 351 NGQSF-RGKDAIKQFLSQNESEREELMRKLRE 381


>gi|89145046|emb|CAJ57531.1| recombinase A [Microbacterium saperdae]
          Length = 218

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 156/217 (71%), Positives = 180/217 (82%)

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA +Q+ GG  AF+DAEHALD  YA KLGVD+  LL+SQPDTGE
Sbjct: 1   IYGPESSGKTTLTLHAIANAQRAGGIAAFIDAEHALDPDYAAKLGVDIDALLVSQPDTGE 60

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  ++
Sbjct: 61  QALEIADMLVRSGAIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLN 120

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++   ++FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TR
Sbjct: 121 QTNTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTR 180

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           VKVVKNKMA PFKQ EFDI+YG GIS  G LID GV+
Sbjct: 181 VKVVKNKMAPPFKQAEFDILYGIGISREGSLIDFGVE 217


>gi|308522644|dbj|BAJ22933.1| DNA recombination protein [Aliivibrio sp. LC2-088]
          Length = 212

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 148/212 (69%), Positives = 184/212 (86%)

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           +GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQ
Sbjct: 1   FGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQ 60

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEI D L RSGAVD++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +
Sbjct: 61  ALEICDALARSGAVDVMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQ 120

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+
Sbjct: 121 SNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVIGNETRI 180

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           KVVKNK+A+PFKQ E  I+YG+G +  GELID
Sbjct: 181 KVVKNKIAAPFKQAETQILYGKGFNREGELID 212


>gi|118767321|gb|ABL11496.1| RecA [Rhizobium sp. PEPSM14]
          Length = 201

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 156/195 (80%), Positives = 181/195 (92%), Gaps = 1/195 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG PKGRI
Sbjct: 8   VDKSKALEAALSQIERSFGKGSIMKLGSNENVIE-IETISTGSLGLDIALGVGGLPKGRI 66

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 67  IEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 126

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 127 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 186

Query: 190 ISRSKCILVFINQMR 204
           IS+S  +++FINQ+R
Sbjct: 187 ISKSNTMVIFINQVR 201


>gi|157493209|gb|ABV57970.1| RecA [Vibrio mimicus VM603]
          Length = 209

 Score =  323 bits (828), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 149/209 (71%), Positives = 183/209 (87%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+M
Sbjct: 61  DPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           SVRLDIRR G+IK+ + + GN+TR+KVVK
Sbjct: 181 SVRLDIRRTGAIKEGEEVVGNETRIKVVK 209


>gi|6694847|gb|AAF25432.1|AF214785_1 RecA protein [Arthrobacter polychromogenes]
          Length = 218

 Score =  323 bits (828), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 151/218 (69%), Positives = 183/218 (83%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGV
Sbjct: 1   ALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDAEHALDPEYAAKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           D   LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIEGDMG+S  G+QAR
Sbjct: 61  DTDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           LMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ 
Sbjct: 121 LMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQ 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275
           ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+G
Sbjct: 181 TLKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQG 218


>gi|6694809|gb|AAF25394.1|AF214747_1 RecA protein [Arthrobacter sp. 'SMCC ZAT005']
          Length = 218

 Score =  322 bits (826), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 151/218 (69%), Positives = 183/218 (83%)

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           GIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD 
Sbjct: 1   GIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHALDPEYAAKLGVDT 60

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
             LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEIEGDMG+S  G+QARLM
Sbjct: 61  DALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIEGDMGDSHVGLQARLM 120

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           SQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ ++
Sbjct: 121 SQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQTL 180

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277
           K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS
Sbjct: 181 KEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQGIS 218


>gi|58415441|emb|CAH57135.1| recA protein [Vibrio cyclitrophicus]
          Length = 204

 Score =  322 bits (826), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 151/204 (74%), Positives = 178/204 (87%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           L LDIALG GG P GRIVE+YGPESSGKTTL L  IA +QK G TCAFVDAEHALD IYA
Sbjct: 1   LSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           +KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIEG+MG+S  
Sbjct: 61  QKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGDSHM 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD
Sbjct: 121 GLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 180

Query: 233 IRRVGSIKDKDSITGNQTRVKVVK 256
           IRR G+IKD D + GN+TR+KVVK
Sbjct: 181 IRRTGAIKDGDEVVGNETRIKVVK 204


>gi|270160513|gb|ACZ63222.1| RecA [Aeromonas rivuli]
 gi|270160523|gb|ACZ63227.1| RecA [Aeromonas rivuli]
          Length = 199

 Score =  322 bits (825), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 151/197 (76%), Positives = 177/197 (89%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSL LD+ALGIGG P GR+VEIYGPESSGKTTL L  IA++QK G TCAFVDAE
Sbjct: 2   IEAISTGSLSLDVALGIGGLPCGRVVEIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE
Sbjct: 62  HALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNALK
Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FY+SVRLDIRR+G+IK+
Sbjct: 182 FYASVRLDIRRIGAIKE 198


>gi|37999806|sp|Q9REJ6|RECA_ARTAU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|6694855|gb|AAF25440.1|AF214793_1 RecA protein [Arthrobacter aurescens]
          Length = 218

 Score =  322 bits (825), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 151/218 (69%), Positives = 183/218 (83%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD
Sbjct: 1   LGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPDYAAKLGVD 60

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
              LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEIEG+MG+S  G+QARL
Sbjct: 61  TDALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIEGEMGDSHVGLQARL 120

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ +
Sbjct: 121 MSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIQT 180

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276
           +K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GI
Sbjct: 181 LKEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQGI 218


>gi|295646433|gb|ADG23042.1| recombinase A [Erwinia sp. CECT 7348]
          Length = 213

 Score =  322 bits (824), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 150/211 (71%), Positives = 182/211 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 3   VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIASAQRKGKTCAFIDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIE
Sbjct: 63  HALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G++G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 123 GEIGDSHMGLAARMMSQAMRKLAGNLKNSGTLLIFINQIRMKIGVMFGNPETTTGGNALK 182

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           FY+SVRLDIRR+G+IK+ D + G++TRVKVV
Sbjct: 183 FYASVRLDIRRIGAIKEGDEVVGSETRVKVV 213


>gi|300089401|gb|ADJ67852.1| recombination repair protein [Photobacterium jeanii]
          Length = 205

 Score =  321 bits (823), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 148/201 (73%), Positives = 177/201 (88%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEIYGPESSGKTTL L  IA +QK G TCAF+DAEHALD IYA+KLGVD+  
Sbjct: 5   GGLPMGRIVEIYGPESSGKTTLTLEAIACAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQ 64

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 65  LLVSQPDTGEQALEICDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 124

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 125 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 184

Query: 242 KDSITGNQTRVKVVKNKMASP 262
            D + GN+TR+KVVKNK+A+P
Sbjct: 185 GDEVVGNETRIKVVKNKVAAP 205


>gi|258611748|ref|ZP_05711623.1| recombinase recA [Listeria monocytogenes FSL R2-503]
 gi|258605867|gb|EEW18475.1| recombinase recA [Listeria monocytogenes FSL R2-503]
          Length = 242

 Score =  321 bits (823), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 152/241 (63%), Positives = 194/241 (80%), Gaps = 2/241 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+
Sbjct: 3   DRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTG
Sbjct: 61  EVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I
Sbjct: 121 EQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR   +K    + GN+ 
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKN 240

Query: 251 R 251
           +
Sbjct: 241 K 241


>gi|300089405|gb|ADJ67854.1| recombination repair protein [Photobacterium jeanii]
          Length = 209

 Score =  321 bits (822), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 149/209 (71%), Positives = 181/209 (86%)

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL L  IA +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI 
Sbjct: 1   SGKTTLTLEAIACAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEIC 60

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ 
Sbjct: 61  DALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMC 120

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKN
Sbjct: 121 IFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKN 180

Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLG 286
           K+A+PFKQ E  I+YG+G +  GELIDLG
Sbjct: 181 KVAAPFKQAETQILYGQGFNRNGELIDLG 209


>gi|226201185|gb|ACO37585.1| recA protein [Aeromonas taiwanensis]
          Length = 199

 Score =  321 bits (822), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 151/197 (76%), Positives = 176/197 (89%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L  IA++QK G TCAFVDAE
Sbjct: 2   IEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE
Sbjct: 62  HALDPVYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNALK
Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FY+SVRLDIRR G+IK+
Sbjct: 182 FYASVRLDIRRTGAIKE 198


>gi|117675779|emb|CAL69160.1| recombinase A [Leifsonia poae]
          Length = 219

 Score =  320 bits (821), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 155/219 (70%), Positives = 181/219 (82%)

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTL LH IA +Q+ GG  AF+DAEHALD  YARKLGVD+  LL+SQPDTGEQALEI D
Sbjct: 1   GKTTLTLHAIANAQRAGGIAAFIDAEHALDPEYARKLGVDIDALLVSQPDTGEQALEIAD 60

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           MLVRSG++D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  +S++   ++
Sbjct: 61  MLVRSGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLSQTNTTMI 120

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNK
Sbjct: 121 FINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGAEAVGNRTRVKVVKNK 180

Query: 259 MASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           MA PFKQ EFDI+YG GIS  G L+D GV+ +IV KSGA
Sbjct: 181 MAPPFKQAEFDILYGVGISREGSLLDFGVEHAIVKKSGA 219


>gi|226201195|gb|ACO37590.1| recA protein [Aeromonas sanarellii]
          Length = 199

 Score =  320 bits (820), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 151/197 (76%), Positives = 176/197 (89%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L  IA++Q+ G TCAFVDAE
Sbjct: 2   IEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQRKGKTCAFVDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE
Sbjct: 62  HALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNALK
Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FY+SVRLDIRR G+IK+
Sbjct: 182 FYASVRLDIRRTGAIKE 198


>gi|117675765|emb|CAL69153.1| recombinase A [Okibacterium fritillariae]
          Length = 219

 Score =  320 bits (820), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 154/219 (70%), Positives = 181/219 (82%)

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTL LH IA +Q+ GG  AF+DAEHALD  YARKLGVD+  LL+SQPDTGEQALEI D
Sbjct: 1   GKTTLTLHAIANAQRAGGIAAFIDAEHALDPEYARKLGVDIDALLVSQPDTGEQALEIAD 60

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           ML+RSG++D++VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  +S++K   +
Sbjct: 61  MLIRSGSIDLVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLSQTKTTAI 120

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           FINQ+R KIGV FGSPETT GG ALKFY+SVR+DIRR+ ++KD     GN+TRVKVVKNK
Sbjct: 121 FINQLREKIGVFFGSPETTAGGKALKFYASVRMDIRRIETLKDGTEAVGNRTRVKVVKNK 180

Query: 259 MASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           MA PFKQ EFDI+YG GIS  G LID GV+ +IV KSGA
Sbjct: 181 MAPPFKQAEFDILYGIGISREGSLIDFGVEHAIVKKSGA 219


>gi|124295574|gb|ABN04185.1| RecA [Bacillus sp. EA1]
          Length = 213

 Score =  320 bits (819), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 151/211 (71%), Positives = 184/211 (87%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SGSL LDIALG+GG+P+GRIVEIYGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD 
Sbjct: 2   SGSLALDIALGVGGYPRGRIVEIYGPESSGKTTVALHAIAEVQKRGGQAAFIDAEHALDP 61

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           IYA+KLGV++  LL+SQPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEIEG+MG+
Sbjct: 62  IYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGD 121

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           +  G+QARLMSQALRKL+ +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFY+SV
Sbjct: 122 AHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYASV 181

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           RL++RR   IK  + + GN+T++KVVKNK+A
Sbjct: 182 RLEVRRAEQIKQGNDMVGNKTKIKVVKNKVA 212


>gi|198385751|gb|ACH86219.1| RecA [Ensifer adhaerens]
          Length = 193

 Score =  320 bits (819), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 156/192 (81%), Positives = 177/192 (92%), Gaps = 1/192 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+D++VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAIDVLVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFIN 201
           IS+S C+++FIN
Sbjct: 182 ISKSNCMVIFIN 193


>gi|6694821|gb|AAF25406.1|AF214759_1 RecA protein [Arthrobacter sp. 'SMCC G950']
          Length = 228

 Score =  320 bits (819), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 152/228 (66%), Positives = 188/228 (82%)

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD   LL+SQPDT
Sbjct: 1   VEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHALDPEYAAKLGVDTDALLVSQPDT 60

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLV SG++DI+VIDSVAAL PRAEIEGDMG+S  G+QARLMSQALRK+T  
Sbjct: 61  GEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKITGR 120

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ ++K+     GN+
Sbjct: 121 LSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQTLKEGADSVGNR 180

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           T+ K+VKNKMA PFK  EFDI+YG+GIS  G +ID+GV+  ++ KSG+
Sbjct: 181 TKAKIVKNKMAPPFKIAEFDIIYGQGISREGGIIDMGVEHGLIKKSGS 228


>gi|323147041|gb|ADX32802.1| recombinase A [endophytic bacterium 13(2011)]
 gi|323147045|gb|ADX32804.1| recombinase A [endophytic bacterium 10(2011)]
 gi|323147047|gb|ADX32805.1| recombinase A [endophytic bacterium 8(2011)]
 gi|323147055|gb|ADX32809.1| recombinase A [endophytic bacterium 16(2011)]
 gi|323147057|gb|ADX32810.1| recombinase A [endophytic bacterium 17(2011)]
 gi|323147063|gb|ADX32813.1| recombinase A [endophytic bacterium 23(2011)]
 gi|323147065|gb|ADX32814.1| recombinase A [endophytic bacterium 24(2011)]
          Length = 224

 Score =  320 bits (819), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 157/215 (73%), Positives = 192/215 (89%), Gaps = 1/215 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG++M+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 11  EKSKALAAALAQIEKQFGKGSVMRLGA-GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVV 69

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 70  EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPDTG 129

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 130 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 189

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKF
Sbjct: 190 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKF 224


>gi|323147037|gb|ADX32800.1| recombinase A [endophytic bacterium 12(2011)]
 gi|323147039|gb|ADX32801.1| recombinase A [endophytic bacterium 9(2011)]
 gi|323147071|gb|ADX32817.1| recombinase A [endophytic bacterium 25(2011)]
          Length = 225

 Score =  320 bits (819), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 157/215 (73%), Positives = 192/215 (89%), Gaps = 1/215 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG++M+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 12  EKSKALAAALAQIEKQFGKGSVMRLGA-GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVV 70

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 71  EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPDTG 130

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 131 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 190

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKF
Sbjct: 191 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKF 225


>gi|194277433|gb|ACF39382.1| RecA [Streptomyces sp. FXJ52]
          Length = 212

 Score =  319 bits (818), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 150/211 (71%), Positives = 181/211 (85%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E IEV+S+GS  LD+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG  AFVD
Sbjct: 2   EPIEVISTGSTALDVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVD 61

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA+KLGVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAE
Sbjct: 62  AEHALDPEYAKKLGVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAE 121

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           IEG+MG+S  G+QARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG A
Sbjct: 122 IEGEMGDSHVGLQARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRA 181

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
           LKFY+SVR+DIRR+ ++KD     GN+TR K
Sbjct: 182 LKFYASVRIDIRRIETLKDGTEAVGNRTRCK 212


>gi|198385755|gb|ACH86221.1| RecA [Rhizobium sp. OR191]
          Length = 192

 Score =  319 bits (818), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 156/191 (81%), Positives = 178/191 (93%), Gaps = 1/191 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  S+ E IE VS+GSLGLDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNESVVE-IETVSTGSLGLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFI 200
           IS+SK +++FI
Sbjct: 182 ISKSKTMVIFI 192


>gi|6694812|gb|AAF25397.1|AF214750_1 RecA protein [Arthrobacter sp. 'SMCC ZAT255']
          Length = 216

 Score =  319 bits (818), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 149/216 (68%), Positives = 181/216 (83%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD
Sbjct: 1   LGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRPGGIAAFIDAEHALDPEYAAKLGVD 60

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
              LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIEGDMG+S  G+QARL
Sbjct: 61  TDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQARL 120

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ +
Sbjct: 121 MSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQT 180

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           +K+     GN+T+ K+VKNKMA PFK  EFDI+YG+
Sbjct: 181 LKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQ 216


>gi|323147077|gb|ADX32820.1| recombinase A [endophytic bacterium 28(2011)]
          Length = 222

 Score =  319 bits (817), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 157/215 (73%), Positives = 192/215 (89%), Gaps = 1/215 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG++M+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 9   EKSKALAAALAQIEKQFGKGSVMRLGA-GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVV 67

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 68  EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPDTG 127

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 128 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 187

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKF
Sbjct: 188 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKF 222


>gi|47109412|emb|CAG28702.1| recA [Propionibacterium jensenii]
          Length = 224

 Score =  319 bits (817), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 151/225 (67%), Positives = 187/225 (83%), Gaps = 2/225 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           +GA+M+LG + ++   I  + +GS+ LD+ALG+GG P+GRIVEIYGPESSGKTT+ALH I
Sbjct: 2   RGAVMRLGERETV--KIPAIPTGSVALDVALGVGGLPRGRIVEIYGPESSGKTTVALHAI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q  GG CAF+DAEHALD  YA+ LGVD  NLLISQPD GEQALEI D LVRSGA+++
Sbjct: 60  ANAQAEGGVCAFIDAEHALDPEYAKNLGVDTDNLLISQPDNGEQALEIADTLVRSGALEL 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRK+T +++ +    +FINQ+R KIG
Sbjct: 120 IVIDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKMTGALNAAGTTAIFINQLREKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
           VMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD D + GN+TR K
Sbjct: 180 VMFGSPETTTGGRALKFYASVRLDVRRIQTLKDGDEMVGNRTRAK 224


>gi|198385759|gb|ACH86223.1| RecA [Sinorhizobium medicae]
          Length = 192

 Score =  319 bits (817), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 155/191 (81%), Positives = 177/191 (92%), Gaps = 1/191 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERAFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFI 200
           IS+S C+++FI
Sbjct: 182 ISKSNCMVIFI 192


>gi|47600829|emb|CAG29680.1| recombinase A [Propionibacterium microaerophilum]
          Length = 225

 Score =  318 bits (816), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 152/226 (67%), Positives = 188/226 (83%), Gaps = 2/226 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           G GA+M+LG + ++   I  + +GS+ LD+ALG+GG P+GRIVEIYGPESSGKTT+ALH 
Sbjct: 2   GAGAVMRLGDRETV--KIPAIPTGSVALDVALGVGGLPRGRIVEIYGPESSGKTTVALHA 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q  GG CAF+DAEHALD  YA+ LGVD +NLLISQPD GEQALEI D LVRSGA++
Sbjct: 60  IANAQAEGGICAFIDAEHALDPEYAKNLGVDTENLLISQPDNGEQALEIADTLVRSGALE 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRK+T +++ +    +FINQ+R KI
Sbjct: 120 LIVIDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKMTGALNTAGTTAIFINQLREKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
           GVMFG+PETTTGG ALKFYSSVRLD+RR+ ++KD D + GN+TR K
Sbjct: 180 GVMFGNPETTTGGRALKFYSSVRLDVRRIQTLKDGDEMVGNRTRSK 225


>gi|198385765|gb|ACH86226.1| RecA [Ensifer sp. T173]
          Length = 193

 Score =  318 bits (814), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 156/192 (81%), Positives = 176/192 (91%), Gaps = 1/192 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+D++VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAIDVLVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFIN 201
           IS+S C+++FI 
Sbjct: 182 ISKSNCMVIFIT 193


>gi|89145177|emb|CAJ57524.1| recombinase A [Microbacterium liquefaciens]
          Length = 214

 Score =  318 bits (814), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 153/214 (71%), Positives = 177/214 (82%)

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTL LH IA +Q+ GG  AF+DAEHALD  YA KLGVD+  LL+SQPDTGEQA
Sbjct: 1   GPESSGKTTLTLHAIANAQRAGGIAAFIDAEHALDPDYAAKLGVDIDALLVSQPDTGEQA 60

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  ++++
Sbjct: 61  LEIADMLVRSGAIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQT 120

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
              ++FINQ+R KIGV FGSPETT GG ALKFY+SVR+DIRR+ ++KD     GN+TRVK
Sbjct: 121 NTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRMDIRRIETLKDGTDAVGNRTRVK 180

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           VVKNKMA PFKQ EFDI+YG GIS  G LID GV
Sbjct: 181 VVKNKMAPPFKQAEFDILYGVGISREGSLIDFGV 214


>gi|30266951|gb|AAP21584.1| recombinase A [Erwinia amylovora]
 gi|30266953|gb|AAP21585.1| recombinase A [Erwinia amylovora]
 gi|30266955|gb|AAP21586.1| recombinase A [Erwinia amylovora]
 gi|30266957|gb|AAP21587.1| recombinase A [Erwinia amylovora]
 gi|30266959|gb|AAP21588.1| recombinase A [Erwinia amylovora]
 gi|30266961|gb|AAP21589.1| recombinase A [Erwinia amylovora]
 gi|30266963|gb|AAP21590.1| recombinase A [Erwinia pyrifoliae DSM 12163]
 gi|30266965|gb|AAP21591.1| recombinase A [Erwinia pyrifoliae Ep1/96]
 gi|30266967|gb|AAP21592.1| recombinase A [Erwinia pyrifoliae]
 gi|30266969|gb|AAP21593.1| recombinase A [Erwinia pyrifoliae]
 gi|30266971|gb|AAP21594.1| recombinase A [Erwinia pyrifoliae]
 gi|30266973|gb|AAP21595.1| recombinase A [Erwinia pyrifoliae]
          Length = 207

 Score =  318 bits (814), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 149/207 (71%), Positives = 179/207 (86%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD 
Sbjct: 1   TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRKGKTCAFIDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+
Sbjct: 61  VYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SV
Sbjct: 121 SHMGLAARMMSQAMRKLAGNLKNSGTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVK 256
           RLDIRR+G+IK+ D + G++TRVKVVK
Sbjct: 181 RLDIRRIGAIKEGDEVVGSETRVKVVK 207


>gi|47109406|emb|CAG28699.1| recA [Propionibacterium freudenreichii subsp. shermanii]
          Length = 225

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 152/226 (67%), Positives = 184/226 (81%), Gaps = 2/226 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           G GA+M+LG Q   +  IE + +GS+ LDIALGIGG P+GRIVE+YGPESSGKTT+ALH 
Sbjct: 2   GAGAVMRLGDQA--YAQIESIPTGSVALDIALGIGGLPRGRIVEVYGPESSGKTTVALHA 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q  GG CAF+DAEHALD  YA  LGV+   LL+SQPD GEQALEI D LVRSGA++
Sbjct: 60  IANAQAEGGICAFIDAEHALDPSYAHALGVNTDELLVSQPDNGEQALEIADTLVRSGALE 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++VIDSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T +I  +   ++FINQ+R KI
Sbjct: 120 LLVIDSVAALTPRAEIEGEMGDSHVGLQARLMSQALRKMTGAIKSANTTVIFINQLREKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
           GVMFGSPETTTGG ALKFYSSVRLD+RR+ S+K+ + I GN+T  K
Sbjct: 180 GVMFGSPETTTGGRALKFYSSVRLDVRRIESLKNGNEIVGNRTHSK 225


>gi|290795153|gb|ADD64591.1| RecA recombinase [Vibrio crassostreae]
          Length = 211

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 151/213 (70%), Positives = 183/213 (85%), Gaps = 2/213 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+I
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAI 211


>gi|323147053|gb|ADX32808.1| recombinase A [endophytic bacterium 18(2011)]
          Length = 224

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 156/214 (72%), Positives = 191/214 (89%), Gaps = 1/214 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG++M+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 12  EKSKALAAALAQIEKQFGKGSVMRLGA-GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVV 70

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 71  EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPDTG 130

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 131 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 190

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 191 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALK 224


>gi|30266949|gb|AAP21583.1| recombinase A [Erwinia psidii]
          Length = 207

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 149/207 (71%), Positives = 178/207 (85%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD 
Sbjct: 1   TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRKGKTCAFIDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+
Sbjct: 61  VYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SV
Sbjct: 121 SHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVK 256
           RLDIRR+G IK  D + G++TRVKVVK
Sbjct: 181 RLDIRRIGPIKKGDEVVGSETRVKVVK 207


>gi|32345032|gb|AAM93526.1| RecA protein [Rickettsia massiliae MTU5]
          Length = 192

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 148/192 (77%), Positives = 174/192 (90%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALGIGG PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  Y
Sbjct: 1   SLGLDIALGIGGIPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+KLGV++  L+ISQPDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++ 
Sbjct: 61  AKKLGVNIDELIISQPDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQ 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
              QARLMSQALRKLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+
Sbjct: 121 MASQARLMSQALRKLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRI 180

Query: 232 DIRRVGSIKDKD 243
           DIRR+GSIKDK+
Sbjct: 181 DIRRIGSIKDKE 192


>gi|303271543|ref|XP_003055133.1| recA DNA recombinase [Micromonas pusilla CCMP1545]
 gi|226463107|gb|EEH60385.1| recA DNA recombinase [Micromonas pusilla CCMP1545]
          Length = 446

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 166/324 (51%), Positives = 229/324 (70%), Gaps = 5/324 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K +AL+  L +I   +GKG+IM+LG+       +    SG++ LDIALG GG P+GRIVE
Sbjct: 98  KLRALDRVLGEIDANFGKGSIMKLGTASQ--AKVATFPSGAMTLDIALG-GGLPRGRIVE 154

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTLALH +A+ QK GG  A +DAEHA D  Y+ +LGV +  +++ QP+TGE
Sbjct: 155 VYGPESSGKTTLALHAMAEMQKFGGNVALIDAEHAFDPEYSARLGVKVNEVIVCQPETGE 214

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
             LE+ D LVRSG +D+IV+DSVAAL PR+EIEG++G    G  ARLMSQALRK+  + +
Sbjct: 215 MGLEVVDALVRSGGIDLIVVDSVAALVPRSEIEGEIGMVQVGAHARLMSQALRKINVNAA 274

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--DSITGNQ 249
           ++   ++F+NQ+R K+GV++G+PE TTGGNALKFY+SVRLDIRR   IK K  +   G +
Sbjct: 275 KAGVTIIFLNQLRSKVGVIYGNPEITTGGNALKFYASVRLDIRRKEVIKGKSGEDDLGTR 334

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKV KNK+A P+K  EFD+++G GI   G  +D      +VDK GAW+S+  ++LGQG
Sbjct: 335 VKVKVAKNKVAPPYKVAEFDMLFGRGIDPMGCTLDAADNMGVVDKRGAWYSYNDEQLGQG 394

Query: 310 RENSKIFLRENIEIAENIESLLRQ 333
           RE +   LREN  +  ++E  +R+
Sbjct: 395 REKTMEKLRENPAMLASVEKDVRR 418


>gi|218678870|ref|ZP_03526767.1| recombinase A [Rhizobium etli CIAT 894]
          Length = 206

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 147/191 (76%), Positives = 173/191 (90%)

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           VAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVMFGS
Sbjct: 1   VAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVMFGS 60

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQTRVKVVKNKMA PFK VEFDIMYG
Sbjct: 61  PETTTGGNALKFYASVRLDIRRIGAVKEREEVIGNQTRVKVVKNKMAPPFKHVEFDIMYG 120

Query: 274 EGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           EG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQGREN+K FLR+N ++A  IE  LRQ
Sbjct: 121 EGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGRENAKTFLRDNPDLAREIELSLRQ 180

Query: 334 NAGLVADSLLQ 344
           NAGL+AD  LQ
Sbjct: 181 NAGLIADRFLQ 191


>gi|6694833|gb|AAF25418.1|AF214771_1 RecA protein [Arthrobacter sp. 'SMCC ZAT054']
          Length = 214

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 148/214 (69%), Positives = 179/214 (83%)

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           GIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD 
Sbjct: 1   GIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHALDPEYAAKLGVDT 60

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
             LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEIEGDMG+S  G+QARLM
Sbjct: 61  DALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIEGDMGDSHVGLQARLM 120

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           SQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ ++
Sbjct: 121 SQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQTL 180

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           K+     GN+T+ K+VKNKMA PFK  EFDI+YG
Sbjct: 181 KEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYG 214


>gi|32345034|gb|AAM93527.1| RecA protein [Rickettsia sp. Bar29]
 gi|32345036|gb|AAM93528.1| RecA protein [Rickettsia helvetica]
          Length = 192

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 148/192 (77%), Positives = 174/192 (90%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALGIGG PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  Y
Sbjct: 1   SLGLDIALGIGGVPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+KLGV++  L+ISQPDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++ 
Sbjct: 61  AKKLGVNIDELIISQPDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQ 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
              QARLMSQALRKLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+
Sbjct: 121 MASQARLMSQALRKLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRI 180

Query: 232 DIRRVGSIKDKD 243
           DIRR+GSIKDK+
Sbjct: 181 DIRRIGSIKDKE 192


>gi|323147043|gb|ADX32803.1| recombinase A [endophytic bacterium 14(2011)]
          Length = 223

 Score =  317 bits (811), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 156/214 (72%), Positives = 191/214 (89%), Gaps = 1/214 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG++M+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 11  EKSKALAAALAQIEKQFGKGSVMRLGA-GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVV 69

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 70  EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPDTG 129

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 130 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 189

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 190 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALK 223


>gi|23194269|gb|AAN15082.1| RecA protein [Vibrio cholerae]
          Length = 203

 Score =  316 bits (809), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 145/203 (71%), Positives = 178/203 (87%)

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
           IALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLG
Sbjct: 1   IALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLG 60

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           V++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QA
Sbjct: 61  VNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQA 120

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           R++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR 
Sbjct: 121 RMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRT 180

Query: 237 GSIKDKDSITGNQTRVKVVKNKM 259
           G+IK+ + + GN+TR+KVVKNK+
Sbjct: 181 GAIKEGEEVVGNETRIKVVKNKI 203


>gi|237757134|ref|ZP_04585566.1| protein RecA [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237690701|gb|EEP59877.1| protein RecA [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 285

 Score =  316 bits (809), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 156/279 (55%), Positives = 217/279 (77%), Gaps = 6/279 (2%)

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           GIGG PKGR++EIYGPESSGKTTL LH IA++QK GG   F+DAEHA D  YA+ +GV+L
Sbjct: 2   GIGGVPKGRVIEIYGPESSGKTTLTLHIIAEAQKKGGRAVFIDAEHAFDPKYAKAIGVNL 61

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
             L+ISQPD GEQA+EI + LVRS AVD+IVIDSVAAL P+AEIEGD+ +S  G+ ARLM
Sbjct: 62  DELIISQPDYGEQAIEIAETLVRSNAVDVIVIDSVAALVPKAEIEGDIEDSNVGLHARLM 121

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           S+A+R L  ++++S   L+ INQ+R K+GVMFG+PETTTGG A+KF++ +R+++R+   I
Sbjct: 122 SKAMRVLKGAVNKSNTALILINQIREKVGVMFGNPETTTGGRAIKFFADMRMEVRK-SDI 180

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           K      G++ +VKVVKNK+A PFK+ EFD++YGEGIS  GE++DLG +  I+ KSGAW+
Sbjct: 181 KTDGEKVGSRVKVKVVKNKLAPPFKEAEFDVIYGEGISKEGEILDLGEELGIIKKSGAWY 240

Query: 300 SFKGQ-----RLGQGRENSKIFLRENIEIAENIESLLRQ 333
           S++ +     +LGQG+E ++ FL++N E+ E +E ++++
Sbjct: 241 SYRDENGEEIKLGQGKEKAREFLKQNKELTEKLEQIIKE 279


>gi|52548226|gb|AAU82102.1| recombinase A [Pantoea ananatis]
          Length = 252

 Score =  316 bits (809), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 151/217 (69%), Positives = 185/217 (85%), Gaps = 2/217 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPE+SGKTTL L  
Sbjct: 1   GKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQRKGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKI
Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           GVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D+
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDN 215


>gi|262064662|gb|ACY07565.1| recombinase A [Rhizobium sp. LCS0303]
          Length = 196

 Score =  316 bits (809), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 152/193 (78%), Positives = 178/193 (92%), Gaps = 1/193 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           V KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 5   VXKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 64  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 124 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 183

Query: 190 ISRSKCILVFINQ 202
           IS+S  +++FINQ
Sbjct: 184 ISKSNTMVIFINQ 196


>gi|325974150|emb|CBM42973.1| recombinase A [Rhizobium sp. STM 6135]
 gi|325974152|emb|CBM42974.1| recombinase A [Rhizobium sp. STM 6155]
          Length = 191

 Score =  315 bits (808), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 154/191 (80%), Positives = 177/191 (92%), Gaps = 1/191 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSLGLDIALGIGG PKGRI
Sbjct: 2   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLGLDIALGIGGLPKGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 61  IEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 121 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDNLPGLQARLMSQALRKLTAS 180

Query: 190 ISRSKCILVFI 200
           IS+S  +++FI
Sbjct: 181 ISKSNTMVIFI 191


>gi|290795151|gb|ADD64590.1| RecA recombinase [Vibrio crassostreae]
          Length = 211

 Score =  315 bits (808), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 150/213 (70%), Positives = 183/213 (85%), Gaps = 2/213 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV++YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVKVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+I
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAI 211


>gi|311692249|dbj|BAJ25739.1| recombinase A [Rhizobium leguminosarum bv. viciae]
          Length = 191

 Score =  315 bits (807), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 152/192 (79%), Positives = 178/192 (92%), Gaps = 1/192 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKCILVFINQM 203
           +S  +++FINQ+
Sbjct: 180 KSNTMVIFINQI 191


>gi|311692227|dbj|BAJ25728.1| recombinase A [Rhizobium sp. I313]
          Length = 191

 Score =  315 bits (807), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 152/192 (79%), Positives = 178/192 (92%), Gaps = 1/192 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKCILVFINQM 203
           +S  ++VFINQ+
Sbjct: 180 KSNTMVVFINQI 191


>gi|32345022|gb|AAM93521.1| RecA protein [Rickettsia slovaca 13-B]
 gi|32345024|gb|AAM93522.1| RecA protein [Rickettsia slovaca]
 gi|32345026|gb|AAM93523.1| RecA protein [Rickettsia conorii]
 gi|32345028|gb|AAM93524.1| RecA protein [Rickettsia conorii]
 gi|32345030|gb|AAM93525.1| RecA protein [Rickettsia slovaca]
          Length = 192

 Score =  315 bits (806), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 147/192 (76%), Positives = 173/192 (90%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALGIGG PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  Y
Sbjct: 1   SLGLDIALGIGGVPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+KLGV++  L+ISQPDTGEQALEI D L+RS  +D+I+IDSVAAL P++EIEG+MG++ 
Sbjct: 61  AKKLGVNIDELIISQPDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMGDAQ 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
              QARLMSQALRKLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+
Sbjct: 121 MASQARLMSQALRKLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRI 180

Query: 232 DIRRVGSIKDKD 243
           DIRR+GSIKDK+
Sbjct: 181 DIRRIGSIKDKE 192


>gi|323147033|gb|ADX32798.1| recombinase A [endophytic bacterium 11(2011)]
          Length = 223

 Score =  315 bits (806), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 155/213 (72%), Positives = 190/213 (89%), Gaps = 1/213 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG++M+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 12  EKSKALAAALAQIEKQFGKGSVMRLGA-GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVV 70

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 71  EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPDTG 130

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 131 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 190

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 191 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNAL 223


>gi|311692215|dbj|BAJ25722.1| recombinase A [Rhizobium sp. I111]
 gi|311692231|dbj|BAJ25730.1| recombinase A [Rhizobium sp. I321]
 gi|311692233|dbj|BAJ25731.1| recombinase A [Rhizobium sp. O111]
 gi|311692239|dbj|BAJ25734.1| recombinase A [Rhizobium sp. T111]
 gi|311692243|dbj|BAJ25736.1| recombinase A [Rhizobium sp. T151]
 gi|311692245|dbj|BAJ25737.1| recombinase A [Rhizobium sp. T211]
 gi|311692247|dbj|BAJ25738.1| recombinase A [Rhizobium sp. H111]
 gi|311692251|dbj|BAJ25740.1| recombinase A [Rhizobium leguminosarum bv. viciae]
          Length = 191

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 151/192 (78%), Positives = 178/192 (92%), Gaps = 1/192 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKCILVFINQM 203
           +S  +++FINQ+
Sbjct: 180 KSNTMVIFINQI 191


>gi|158263005|gb|ABW24279.1| RecA [Lactococcus lactis subsp. lactis]
          Length = 251

 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 157/253 (62%), Positives = 196/253 (77%), Gaps = 8/253 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           + VVSSGSL LDIALG GG+PKGRIVEIYGPESSGKTT+ALH +A  QK GG  AF+DAE
Sbjct: 1   VSVVSSGSLALDIALGAGGYPKGRIVEIYGPESSGKTTVALHAVAAVQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD  YA+ LGV++  LL+SQPD GEQ L+I + L+ SGAVD++VIDSVAAL P+AEI+
Sbjct: 61  NALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAALVPKAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G++G+S  G+QAR+MSQA+RKL   I+++K   +FINQ+R K+GVMFGSPETT GG ALK
Sbjct: 121 GEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK------DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISF 278
           FY+SVRLD+R  GS K      D  +  G  T++KVVKNK+A PFK    DIM+GEGIS 
Sbjct: 181 FYASVRLDVR--GSTKIEEGSGDNKTQIGKITKIKVVKNKVAPPFKVALVDIMFGEGISR 238

Query: 279 FGELIDLGVKASI 291
            GEL+++ V   I
Sbjct: 239 TGELLNIAVDEGI 251


>gi|297530529|ref|YP_003671804.1| recA protein [Geobacillus sp. C56-T3]
 gi|297253781|gb|ADI27227.1| recA protein [Geobacillus sp. C56-T3]
          Length = 280

 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 150/241 (62%), Positives = 194/241 (80%)

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +LD IYA+KLGV++  LL+SQPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEIEG
Sbjct: 30  SLDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEG 89

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +MG++  G+QARLMSQALRKL+ +I++SK I +FINQ+R K+GVMFG+PETT GG ALKF
Sbjct: 90  EMGDAHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKF 149

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           Y+SVRL++RR   IK  + + GN+T++KVVKNK+A PFK  + DIMYGEGIS  GE++D+
Sbjct: 150 YASVRLEVRRAEQIKQGNDMVGNKTKIKVVKNKVAPPFKTADVDIMYGEGISREGEILDM 209

Query: 286 GVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
             +  IV KSG+W+S+K +RLGQGREN+K FL+EN  IA+ I   +RQ+ G+  +    E
Sbjct: 210 ASELDIVQKSGSWYSYKDERLGQGRENAKQFLKENPHIADEIARAIRQHYGIDVEEGTSE 269

Query: 346 P 346
           P
Sbjct: 270 P 270


>gi|239826692|ref|YP_002949316.1| recA protein [Geobacillus sp. WCH70]
 gi|239806985|gb|ACS24050.1| recA protein [Geobacillus sp. WCH70]
          Length = 283

 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 149/237 (62%), Positives = 194/237 (81%)

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +LD +YA+KLGV++  LL+SQPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEIEG
Sbjct: 30  SLDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEG 89

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +MG++  G+QARLMSQALRKL+ +I++SK I +FINQ+R K+GVMFG+PETT GG ALKF
Sbjct: 90  EMGDAHVGLQARLMSQALRKLSGAINKSKAIAIFINQIREKVGVMFGNPETTPGGRALKF 149

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           Y+SVRL++RR   IK  + + GN+T++KVVKNK+A PFK  + DIMYGEGIS  GE+ID+
Sbjct: 150 YASVRLEVRRAEQIKQGNDMVGNKTKIKVVKNKVAPPFKTADVDIMYGEGISREGEIIDM 209

Query: 286 GVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSL 342
             +  IV KSG+W+S+K +RLGQGREN+K FL+EN  IAE I   +R++ G+ + S+
Sbjct: 210 ASELDIVQKSGSWYSYKDERLGQGRENAKQFLKENPHIAEEIAQEIRRHYGIESPSV 266


>gi|6694823|gb|AAF25408.1|AF214761_1 RecA protein [Arthrobacter sp. 'SMCC G959']
          Length = 213

 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 146/213 (68%), Positives = 178/213 (83%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD   L
Sbjct: 1   GLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHALDPEYAAKLGVDTDAL 60

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           L+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEIEGDMG+S  G+QARLMSQA
Sbjct: 61  LVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIEGDMGDSHVGLQARLMSQA 120

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           LRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ ++K+ 
Sbjct: 121 LRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQTLKEG 180

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275
               GN+T+ K+VKNKMA PFK  EFDI+YG+G
Sbjct: 181 ADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQG 213


>gi|162955834|gb|ABY25292.1| recombinant DNA repair protein [Vibrio sp. MSSRF6]
          Length = 210

 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 148/212 (69%), Positives = 182/212 (85%), Gaps = 2/212 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +
Sbjct: 1   IMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAAA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           Q+ G TCAF+DAEHALD +YA+KLGVD+ +LL+SQPDTGEQALEI D L RSGA+D++V+
Sbjct: 59  QREGKTCAFIDAEHALDPVYAKKLGVDIDSLLVSQPDTGEQALEICDALARSGAIDVMVV 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMF
Sbjct: 119 DSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           G+PETTTGGNALKFY+SVRLDIRR GSIK+ D
Sbjct: 179 GNPETTTGGNALKFYASVRLDIRRTGSIKEGD 210


>gi|23194261|gb|AAN15078.1| RecA protein [Vibrio cholerae]
          Length = 212

 Score =  314 bits (804), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 144/209 (68%), Positives = 180/209 (86%)

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D 
Sbjct: 1   KTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDA 60

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +F
Sbjct: 61  LARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIF 120

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           INQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+
Sbjct: 121 INQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKI 180

Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           A+PFK+    IMYG+G +  GELIDLGVK
Sbjct: 181 AAPFKEANTQIMYGQGFNREGELIDLGVK 209


>gi|306996353|gb|ADN21396.1| recombination protein A [Rhizobium endophyticum CCGE 2052]
          Length = 192

 Score =  314 bits (804), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 152/191 (79%), Positives = 177/191 (92%), Gaps = 1/191 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LG++ S+ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGAKDSVIE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFI 200
           IS+S  +++FI
Sbjct: 182 ISKSNTMVIFI 192


>gi|290795192|gb|ADD64610.1| RecA recombinase [Vibrio cyclitrophicus]
          Length = 200

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 147/200 (73%), Positives = 174/200 (87%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +QK G TCAFVDAEH
Sbjct: 1   ETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIEG
Sbjct: 61  ALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKF
Sbjct: 121 EMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKF 180

Query: 226 YSSVRLDIRRVGSIKDKDSI 245
           Y+SVRLDIRR G+IKD D +
Sbjct: 181 YASVRLDIRRTGAIKDGDEV 200


>gi|47600831|emb|CAG29681.1| recombinase A [Propionibacterium thoenii]
          Length = 221

 Score =  313 bits (803), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 150/222 (67%), Positives = 184/222 (82%), Gaps = 2/222 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           G GA+M+LG + ++   I  + +GS+ LD+ALG+GG P+GRIVEIYGPESSGKTT+ALH 
Sbjct: 2   GAGAVMRLGERETVK--IPAIPTGSVALDVALGVGGLPRGRIVEIYGPESSGKTTVALHA 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q  GG CAF+DAEHALD  YA+ LGVD  NLLISQPD GEQALEI D LVRSGA++
Sbjct: 60  IANAQAEGGVCAFIDAEHALDPEYAKNLGVDTDNLLISQPDNGEQALEIADTLVRSGALE 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRK+T ++S +    +FINQ+R KI
Sbjct: 120 LIVIDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKMTGALSGAGTTAIFINQLREKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           GVMFG+PETTTGG ALKFYSSVRLD+RR+ ++KD D + GN+
Sbjct: 180 GVMFGNPETTTGGRALKFYSSVRLDVRRIQTLKDGDEMVGNR 221


>gi|30961729|gb|AAP39983.1| RecA [Helicobacter acinonychis]
          Length = 214

 Score =  313 bits (803), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 145/212 (68%), Positives = 181/212 (85%), Gaps = 1/212 (0%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHAL
Sbjct: 3   ISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHAL 62

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDM
Sbjct: 63  DVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM 122

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFY 226
           G+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY
Sbjct: 123 GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFY 182

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           +SVR+DIRR+ ++K  +   GN+ +VKVVKNK
Sbjct: 183 ASVRIDIRRIAALKQNEQHIGNRAKVKVVKNK 214


>gi|6694828|gb|AAF25413.1|AF214766_1 RecA protein [Arthrobacter sp. 'SMCC G968']
          Length = 212

 Score =  313 bits (802), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 146/212 (68%), Positives = 177/212 (83%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD  
Sbjct: 1   IGGLPRGRVVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDAEHALDPEYAAKLGVDTD 60

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIEGDMG+S  G+QARLMS
Sbjct: 61  ALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQARLMS 120

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ ++K
Sbjct: 121 QALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQTLK 180

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +     GN+T+ K+VKNKMA PFK  EFDI+Y
Sbjct: 181 EGADSVGNRTKAKIVKNKMAPPFKVAEFDIIY 212


>gi|198385745|gb|ACH86216.1| RecA [Rhizobium sp. T1473]
          Length = 188

 Score =  313 bits (801), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 152/189 (80%), Positives = 175/189 (92%), Gaps = 1/189 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LEAALSQI+R +GKG+IM+LGS  S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGP
Sbjct: 1   LEAALSQIERSFGKGSIMKLGSNESVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           ITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+SK 
Sbjct: 120 ITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSKT 179

Query: 196 ILVFINQMR 204
           +++FIN +R
Sbjct: 180 MVIFINXIR 188


>gi|262272835|gb|ACY40637.1| RecA [Leptotrichia sp. HKU24]
          Length = 239

 Score =  313 bits (801), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 157/238 (65%), Positives = 199/238 (83%), Gaps = 3/238 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALGIGG P+GRIVEIYG ESSGKTTLALH IA++QK GGT AF+DAEHAL
Sbjct: 2   ISTGSLNLDIALGIGGVPRGRIVEIYGAESSGKTTLALHIIAEAQKAGGTVAFIDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+ LGV++  LLISQPDTGEQALEI+DMLVRSGA+D+IV+DSVAAL P+AEIEG+M
Sbjct: 62  DPVYAKALGVNIDELLISQPDTGEQALEISDMLVRSGAMDVIVVDSVAALVPKAEIEGEM 121

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG---VMFGSPETTTGGNALK 224
           G+   G+QARLMS+ALRKLT SIS+S  +++FINQ+R KIG    + G   TT+GG ALK
Sbjct: 122 GDQQMGLQARLMSKALRKLTGSISKSDTVMIFINQIREKIGGFSFVPGVQTTTSGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           F+S+VR++++RVGS+K  D + G++  VKV KNK+A PFK+ +F++MYG GIS  GE+
Sbjct: 182 FFSTVRMEVKRVGSVKQGDDVIGSEVVVKVTKNKVAPPFKEAKFNVMYGTGISKIGEV 239


>gi|50365022|ref|YP_053447.1| recombinase A [Mesoplasma florum L1]
 gi|50363578|gb|AAT75563.1| recombinase A [Mesoplasma florum L1]
          Length = 346

 Score =  313 bits (801), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 165/326 (50%), Positives = 240/326 (73%), Gaps = 2/326 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N + K++AL +AL  I++ YGK A++       I    +V+SSGS  +D A+GIGG+PKG
Sbjct: 18  NEIWKNEALISALKTIEKNYGKEALVVYNEGDDIDH--DVISSGSFLIDQAIGIGGYPKG 75

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R+VEI+GPESSGKTTLALH IA++QK G   AF+DAEH+LD  YA+K+GVD+ +LL+SQP
Sbjct: 76  RVVEIFGPESSGKTTLALHAIAEAQKQGEIAAFIDAEHSLDLNYAKKIGVDINSLLVSQP 135

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
             GE+AL+I + LV+S ++ +IV+DSVAAL P+ E+EG+M +   G+QAR+MS+ALRKL 
Sbjct: 136 SYGEEALDILETLVKSNSISLIVVDSVAALVPKTELEGEMSDQSIGLQARMMSKALRKLN 195

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
             IS+SK  ++FINQ+R KIG+MFG+PETTTGG ALKF+S++R+++R+  S+ +   +  
Sbjct: 196 GVISKSKTTVIFINQLREKIGIMFGNPETTTGGRALKFFSTLRIEVRKGESLIENGIVVA 255

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+ +VKVVKNK+A PFKQ    I Y +GI    E+I+L    +I+DKSG W+S++ +++G
Sbjct: 256 NKVKVKVVKNKVAVPFKQTLITIGYDKGIERINEIIELATLYNILDKSGVWYSYEKEKIG 315

Query: 308 QGRENSKIFLRENIEIAENIESLLRQ 333
           QG+   K +L +N +    IE  L++
Sbjct: 316 QGKNAVKEWLNKNPDKLSKIEFELKE 341


>gi|117675797|emb|CAL69169.1| recombinase A [Curtobacterium albidum]
          Length = 219

 Score =  313 bits (801), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 150/219 (68%), Positives = 178/219 (81%)

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI 
Sbjct: 1   SGKTTLTLHAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIA 60

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           DMLVRSG++D+IV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL   +++++  +
Sbjct: 61  DMLVRSGSIDLIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGGLNQTQTTM 120

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           +FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++K      GN+TRVKVVKN
Sbjct: 121 IFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKSGTDAVGNRTRVKVVKN 180

Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
           KMA PFKQ EFDI+YG GIS  G L+D GV   IV KSG
Sbjct: 181 KMAPPFKQAEFDILYGTGISREGSLLDFGVDHGIVKKSG 219


>gi|117675805|emb|CAL69173.1| recombinase A [Clavibacter michiganensis subsp. insidiosus]
          Length = 216

 Score =  312 bits (800), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 150/216 (69%), Positives = 178/216 (82%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DMLV
Sbjct: 1   TLTLHAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG++D++VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  +++++  ++FIN
Sbjct: 61  RSGSIDLVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTQTTMIFIN 120

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA 
Sbjct: 121 QLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVGNRTRVKVVKNKMAP 180

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           PFKQ EFDI+YG GIS  G LID GV+  IV KSGA
Sbjct: 181 PFKQAEFDILYGTGISREGSLIDFGVEHEIVRKSGA 216


>gi|269784254|emb|CBH50772.1| recA protein [Vibrio sp. Rd 6.8]
          Length = 206

 Score =  312 bits (800), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 146/201 (72%), Positives = 174/201 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +QK G TCAFVDAE
Sbjct: 5   VETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAE 64

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA+KLGVD+  LL+SQPDTGE ALEI D L RSGA+D++VIDSVAALTP+AEIE
Sbjct: 65  HALDPIYAQKLGVDIDALLVSQPDTGEPALEICDALARSGAIDVLVIDSVAALTPKAEIE 124

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 125 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALK 184

Query: 225 FYSSVRLDIRRVGSIKDKDSI 245
           FY+SVRLDIRR G+IKD D +
Sbjct: 185 FYASVRLDIRRTGAIKDGDEV 205


>gi|59798248|sp|Q6F1R0|RECA_MESFL RecName: Full=Protein RecA; AltName: Full=Recombinase A
          Length = 333

 Score =  312 bits (800), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 165/326 (50%), Positives = 240/326 (73%), Gaps = 2/326 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N + K++AL +AL  I++ YGK A++       I    +V+SSGS  +D A+GIGG+PKG
Sbjct: 5   NEIWKNEALISALKTIEKNYGKEALVVYNEGDDIDH--DVISSGSFLIDQAIGIGGYPKG 62

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R+VEI+GPESSGKTTLALH IA++QK G   AF+DAEH+LD  YA+K+GVD+ +LL+SQP
Sbjct: 63  RVVEIFGPESSGKTTLALHAIAEAQKQGEIAAFIDAEHSLDLNYAKKIGVDINSLLVSQP 122

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
             GE+AL+I + LV+S ++ +IV+DSVAAL P+ E+EG+M +   G+QAR+MS+ALRKL 
Sbjct: 123 SYGEEALDILETLVKSNSISLIVVDSVAALVPKTELEGEMSDQSIGLQARMMSKALRKLN 182

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
             IS+SK  ++FINQ+R KIG+MFG+PETTTGG ALKF+S++R+++R+  S+ +   +  
Sbjct: 183 GVISKSKTTVIFINQLREKIGIMFGNPETTTGGRALKFFSTLRIEVRKGESLIENGIVVA 242

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+ +VKVVKNK+A PFKQ    I Y +GI    E+I+L    +I+DKSG W+S++ +++G
Sbjct: 243 NKVKVKVVKNKVAVPFKQTLITIGYDKGIERINEIIELATLYNILDKSGVWYSYEKEKIG 302

Query: 308 QGRENSKIFLRENIEIAENIESLLRQ 333
           QG+   K +L +N +    IE  L++
Sbjct: 303 QGKNAVKEWLNKNPDKLSKIEFELKE 328


>gi|118767325|gb|ABL11498.1| RecA [Rhizobium sp. PEPSM18]
          Length = 186

 Score =  312 bits (800), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 154/184 (83%), Positives = 172/184 (93%), Gaps = 1/184 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSLGLDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLGLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPGMQARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 181

Query: 190 ISRS 193
           IS+S
Sbjct: 182 ISKS 185


>gi|215428164|ref|ZP_03426083.1| recombinase A [Mycobacterium tuberculosis T92]
 gi|289751391|ref|ZP_06510769.1| recombination protein recA [Mycobacterium tuberculosis T92]
 gi|289691978|gb|EFD59407.1| recombination protein recA [Mycobacterium tuberculosis T92]
          Length = 790

 Score =  312 bits (799), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 147/221 (66%), Positives = 186/221 (84%), Gaps = 2/221 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI++ YGKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 6   DREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+
Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRM 224



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 65/86 (75%)

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VV +  + PFKQ EFDI+YG+GIS  G LID+GV   ++ KSGAWF+++G++LGQG+EN+
Sbjct: 687 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENA 746

Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339
           + FL EN ++A+ IE  +++  G+ A
Sbjct: 747 RNFLVENADVADEIEKKIKEKLGIGA 772


>gi|99866625|gb|ABF67650.1| RecA [Pectobacterium carotovorum]
 gi|99866641|gb|ABF67658.1| RecA [Pectobacterium carotovorum]
 gi|99866645|gb|ABF67660.1| RecA [Pectobacterium carotovorum]
 gi|99866649|gb|ABF67662.1| RecA [Pectobacterium carotovorum]
 gi|99866651|gb|ABF67663.1| RecA [Pectobacterium carotovorum]
 gi|99866653|gb|ABF67664.1| RecA [Pectobacterium carotovorum]
 gi|99866655|gb|ABF67665.1| RecA [Pectobacterium carotovorum]
 gi|99866659|gb|ABF67667.1| RecA [Pectobacterium carotovorum]
 gi|99866661|gb|ABF67668.1| RecA [Pectobacterium carotovorum]
 gi|99866667|gb|ABF67671.1| RecA [Pectobacterium carotovorum]
 gi|99866669|gb|ABF67672.1| RecA [Pectobacterium carotovorum]
 gi|99866683|gb|ABF67679.1| RecA [Pectobacterium carotovorum]
          Length = 204

 Score =  312 bits (799), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 146/204 (71%), Positives = 176/204 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD
Sbjct: 1   STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G
Sbjct: 61  PIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+S
Sbjct: 121 DSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRV 252
           VRLDIRR G+IKD + + G++TRV
Sbjct: 181 VRLDIRRTGAIKDGEEVVGSETRV 204


>gi|30961733|gb|AAP39985.1| RecA [Helicobacter acinonychis]
 gi|30961735|gb|AAP39986.1| RecA [Helicobacter acinonychis]
          Length = 214

 Score =  312 bits (799), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 144/212 (67%), Positives = 180/212 (84%), Gaps = 1/212 (0%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHAL
Sbjct: 3   ISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHAL 62

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDM
Sbjct: 63  DVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM 122

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFY 226
           G+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY
Sbjct: 123 GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFY 182

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           +SVR+DIRR+ ++K  +   GN+ + KVVKNK
Sbjct: 183 ASVRIDIRRIAALKQNEQHIGNRAKAKVVKNK 214


>gi|148879013|emb|CAM07022.1| RecA protein [Mycobacterium llatzerense]
          Length = 225

 Score =  312 bits (799), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 147/223 (65%), Positives = 183/223 (82%)

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG  A  DAE ALD  YA+KLGVD   LL+SQPDTGEQALEI DMLVRSGA+DI+VIDSV
Sbjct: 2   GGXAAXXDAEXALDPDYAQKLGVDTDALLVSQPDTGEQALEIADMLVRSGAIDILVIDSV 61

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AAL PRAEIEG+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFGSP
Sbjct: 62  AALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSP 121

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           ETTTGG ALKFY+SVR+D+RR+ ++KD     GN+TR K+VKNK+A PFKQ EFDI+YG+
Sbjct: 122 ETTTGGKALKFYASVRIDVRRIETLKDGTDAVGNRTRAKIVKNKVAPPFKQAEFDILYGK 181

Query: 275 GISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317
           GIS  G LID+GV+   + KSG+WF++ G++LGQG+EN++ +L
Sbjct: 182 GISKEGSLIDMGVEHGFIRKSGSWFTYHGEQLGQGKENARNYL 224


>gi|117675777|emb|CAL69159.1| recombinase A [Agromyces cerinus subsp. nitratus]
          Length = 214

 Score =  311 bits (798), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 151/214 (70%), Positives = 176/214 (82%)

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTL LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI D
Sbjct: 1   GKTTLTLHAIANAQRNGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIAD 60

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           MLVRSG++D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  +S++   ++
Sbjct: 61  MLVRSGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLSQTNTTMI 120

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNK
Sbjct: 121 FINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVGNRTRVKVVKNK 180

Query: 259 MASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           MA PFKQ EFDI+YG GIS  G LID GV  +IV
Sbjct: 181 MAPPFKQAEFDILYGVGISREGSLIDYGVDQAIV 214


>gi|99866647|gb|ABF67661.1| RecA [Pectobacterium carotovorum]
          Length = 204

 Score =  311 bits (798), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 146/204 (71%), Positives = 176/204 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD
Sbjct: 1   STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G
Sbjct: 61  PIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+S
Sbjct: 121 DSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRV 252
           VRLDIRR G+IKD + + G++TRV
Sbjct: 181 VRLDIRRTGAIKDGEXVVGSETRV 204


>gi|254838538|gb|ACT83417.1| recombinase A [Vibrio cholerae]
 gi|254838540|gb|ACT83418.1| recombinase A [Vibrio cholerae]
 gi|254838542|gb|ACT83419.1| recombinase A [Vibrio cholerae]
 gi|254838544|gb|ACT83420.1| recombinase A [Vibrio cholerae]
 gi|254838546|gb|ACT83421.1| recombinase A [Vibrio cholerae]
 gi|254838548|gb|ACT83422.1| recombinase A [Vibrio cholerae]
          Length = 210

 Score =  311 bits (798), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 147/212 (69%), Positives = 182/212 (85%), Gaps = 2/212 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA
Sbjct: 1   GSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+I
Sbjct: 59  AAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVI 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGV
Sbjct: 119 VVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           MFG+PETTTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 179 MFGNPETTTGGNALKFYASVRLDIRRTGAIKE 210


>gi|58698464|ref|ZP_00373372.1| recA protein [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58535029|gb|EAL59120.1| recA protein [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 235

 Score =  311 bits (797), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 142/210 (67%), Positives = 181/210 (86%)

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           +ISQPDTGEQAL I + LV SGAVD+IVIDSVAALTPRAEIEGDMG+   G+QARL+S  
Sbjct: 1   MISQPDTGEQALHIVEYLVCSGAVDVIVIDSVAALTPRAEIEGDMGDQHMGLQARLLSHG 60

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           LRKLTS++S++ CIL+FINQ+RMKIGV++G+PETTTGGNALKFY+SVRLDIR++G IKDK
Sbjct: 61  LRKLTSAVSKANCILIFINQIRMKIGVVYGNPETTTGGNALKFYTSVRLDIRKIGVIKDK 120

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           ++ITGN+TRVKVVKNK+A PF++ +FDIMY EGIS  GE+ID+G K  +++K+GA++S+ 
Sbjct: 121 ENITGNETRVKVVKNKVAPPFREAKFDIMYNEGISKLGEIIDMGAKLGVLEKAGAYYSYN 180

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLR 332
             RLGQGREN K +L+ N E+A  IE+ +R
Sbjct: 181 NTRLGQGRENVKTYLKTNKEVANEIETKIR 210


>gi|198385757|gb|ACH86222.1| RecA [Sinorhizobium medicae]
          Length = 188

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 152/187 (81%), Positives = 172/187 (91%), Gaps = 1/187 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSK LEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI
Sbjct: 3   VDKSKXLEAALSQIERAFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 181

Query: 190 ISRSKCI 196
           IS+S C+
Sbjct: 182 ISKSNCM 188


>gi|117675767|emb|CAL69154.1| recombinase A [Cryobacterium psychrophilum]
          Length = 213

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 151/213 (70%), Positives = 175/213 (82%)

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTL LH IA +QK GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DM
Sbjct: 1   KTTLTLHAIANAQKNGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIADM 60

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           LVRSG++D+IV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  +S++   ++F
Sbjct: 61  LVRSGSIDLIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLSQTNTTMIF 120

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           INQ+R KIGV FGSPETT+GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKM
Sbjct: 121 INQLREKIGVFFGSPETTSGGKALKFYASVRLDIRRIETLKDGTDAIGNRTRVKVVKNKM 180

Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           A PFKQ EFDIMYG GIS  G LID GV   IV
Sbjct: 181 APPFKQAEFDIMYGIGISREGSLIDFGVDQGIV 213


>gi|225350253|gb|ACN88011.1| RecA [Vibrio sp. SG219]
 gi|225350255|gb|ACN88012.1| RecA [Vibrio sp. SG189]
 gi|225350257|gb|ACN88013.1| RecA [Vibrio sp. 7-SG326]
 gi|225350259|gb|ACN88014.1| RecA [Vibrio sp. 7-SG291]
 gi|225350261|gb|ACN88015.1| RecA [Vibrio sp. AF23]
 gi|225350263|gb|ACN88016.1| RecA [Vibrio sp. AF2]
 gi|225350265|gb|ACN88017.1| RecA [Vibrio sp. 7-SG81]
 gi|225350267|gb|ACN88018.1| RecA [Vibrio sp. 7-SG165]
 gi|225350269|gb|ACN88019.1| RecA [Vibrio sp. J-C2-15]
 gi|225350271|gb|ACN88020.1| RecA [Vibrio sp. 7-SG204]
 gi|225350273|gb|ACN88021.1| RecA [Vibrio sp. SG364]
 gi|225350275|gb|ACN88022.1| RecA [Vibrio sp. J-M1-23]
          Length = 201

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 140/201 (69%), Positives = 175/201 (87%)

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQA
Sbjct: 1   GPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQA 60

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S
Sbjct: 61  LEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQS 120

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+K
Sbjct: 121 NCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIK 180

Query: 254 VVKNKMASPFKQVEFDIMYGE 274
           VVKNK+A+PFK+    IMYG+
Sbjct: 181 VVKNKIAAPFKEANTQIMYGQ 201


>gi|99866623|gb|ABF67649.1| RecA [Pectobacterium carotovorum]
 gi|99866627|gb|ABF67651.1| RecA [Pectobacterium carotovorum]
 gi|99866633|gb|ABF67654.1| RecA [Pectobacterium carotovorum]
 gi|99866639|gb|ABF67657.1| RecA [Pectobacterium atrosepticum]
 gi|99866657|gb|ABF67666.1| RecA [Pectobacterium carotovorum]
 gi|99866665|gb|ABF67670.1| RecA [Pectobacterium carotovorum]
 gi|99866687|gb|ABF67681.1| RecA [Pectobacterium carotovorum]
          Length = 204

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 145/204 (71%), Positives = 176/204 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD
Sbjct: 1   STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G
Sbjct: 61  PIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+S
Sbjct: 121 DSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRV 252
           VRLDIRR G+IK+ + + G++TRV
Sbjct: 181 VRLDIRRTGAIKEGEEVVGSETRV 204


>gi|99866629|gb|ABF67652.1| RecA [Pectobacterium carotovorum]
          Length = 204

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 145/204 (71%), Positives = 176/204 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD
Sbjct: 1   STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G
Sbjct: 61  PIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+S
Sbjct: 121 DSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRV 252
           VRLDIRR G+IK+ + + G++TRV
Sbjct: 181 VRLDIRRTGAIKEGEKVVGSETRV 204


>gi|99866635|gb|ABF67655.1| RecA [Pectobacterium carotovorum]
          Length = 204

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 145/204 (71%), Positives = 176/204 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD
Sbjct: 1   STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G
Sbjct: 61  PIYAKKLGVDIDNLLCSQPDTGEQALEIXDALTRSGAVDVIIVDSVAALTPKAEIEGEIG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+S
Sbjct: 121 DSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRV 252
           VRLDIRR G+IK+ + + G++TRV
Sbjct: 181 VRLDIRRTGAIKEGEEVVGSETRV 204


>gi|20161605|dbj|BAB90525.1| putative RecA protein [Oryza sativa Japonica Group]
          Length = 344

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 162/293 (55%), Positives = 223/293 (76%), Gaps = 5/293 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           + VVS+GS  LD+ALG GG PKGR++E+YGPE+SGKTTLALH IA++QK GG CAFVDAE
Sbjct: 12  VPVVSTGSFSLDLALGTGGLPKGRVIEVYGPEASGKTTLALHVIAEAQKHGGYCAFVDAE 71

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD   A  +GV+  NLL+SQPD GEQAL + D L+RSG+VD++V+DSVAAL P++E++
Sbjct: 72  HALDPALAESIGVNTSNLLLSQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKSELD 131

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM--FGSP-ETTTGGN 221
           G+MG++   +QARLMSQALRKL+ S+S S+ IL+FINQ+R K+     FG P E T+GGN
Sbjct: 132 GEMGDAHVALQARLMSQALRKLSHSLSLSQTILLFINQIRSKVTTFGGFGGPMEVTSGGN 191

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE 281
           ALKFY+SVR++I+R+G +K  +   G+Q  VK+VKNK A PFK  +F++ +G+GI    E
Sbjct: 192 ALKFYASVRMNIKRIGLVKKGEETIGSQVLVKIVKNKHAPPFKTAQFELEFGKGICRSSE 251

Query: 282 LIDLGVKASIVDK-SGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           LI+LG+K  +V K  GA++SF  +   +G++  K +L EN  IA+ +E+ LR+
Sbjct: 252 LIELGLKHKLVKKLGGAFYSFNEESY-RGKDALKSYLNENESIAKELETNLRK 303


>gi|213012322|gb|ACJ38727.1| recombination-repair protein [Photobacterium sp. R-13]
 gi|213012324|gb|ACJ38728.1| recombination-repair protein [Photobacterium sp. R-15]
          Length = 197

 Score =  310 bits (794), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 143/197 (72%), Positives = 172/197 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLEAIACAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMYG 273
           NK+A+PFKQ E  I+YG
Sbjct: 181 NKIAAPFKQAETQILYG 197


>gi|117675781|emb|CAL69161.1| recombinase A [Rathayibacter festucae]
          Length = 219

 Score =  310 bits (793), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 154/219 (70%), Positives = 180/219 (82%)

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTL LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+ +LL+SQPDTGEQALEI D
Sbjct: 1   GKTTLTLHAIANAQRNGGIAAFIDAEHALDPEYAKKLGVDIDSLLVSQPDTGEQALEIAD 60

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           MLVRSG++D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  ++ +   ++
Sbjct: 61  MLVRSGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNTTNTTMI 120

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNK
Sbjct: 121 FINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVGNRTRVKVVKNK 180

Query: 259 MASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           MA PFKQ EFDI+YG GIS  G LID GV+  IV KSGA
Sbjct: 181 MAPPFKQAEFDILYGIGISREGSLIDFGVEHEIVRKSGA 219


>gi|119514640|gb|ABL76132.1| RecA [Listeria monocytogenes]
 gi|119514642|gb|ABL76133.1| RecA [Listeria monocytogenes]
 gi|119514644|gb|ABL76134.1| RecA [Listeria monocytogenes]
 gi|119514646|gb|ABL76135.1| RecA [Listeria monocytogenes]
 gi|119514648|gb|ABL76136.1| RecA [Listeria monocytogenes]
 gi|119514650|gb|ABL76137.1| RecA [Listeria monocytogenes]
 gi|119514652|gb|ABL76138.1| RecA [Listeria monocytogenes]
 gi|119514654|gb|ABL76139.1| RecA [Listeria monocytogenes]
 gi|119514656|gb|ABL76140.1| RecA [Listeria monocytogenes]
 gi|119514658|gb|ABL76141.1| RecA [Listeria monocytogenes 690]
 gi|119514660|gb|ABL76142.1| RecA [Listeria monocytogenes]
 gi|119514662|gb|ABL76143.1| RecA [Listeria monocytogenes]
 gi|119514664|gb|ABL76144.1| RecA [Listeria monocytogenes]
 gi|119514666|gb|ABL76145.1| RecA [Listeria monocytogenes]
 gi|119514668|gb|ABL76146.1| RecA [Listeria monocytogenes]
 gi|119514670|gb|ABL76147.1| RecA [Listeria monocytogenes]
 gi|119514672|gb|ABL76148.1| RecA [Listeria monocytogenes]
 gi|119514674|gb|ABL76149.1| RecA [Listeria monocytogenes]
 gi|119514676|gb|ABL76150.1| RecA [Listeria monocytogenes]
 gi|119514678|gb|ABL76151.1| RecA [Listeria monocytogenes]
 gi|119514680|gb|ABL76152.1| RecA [Listeria monocytogenes]
          Length = 226

 Score =  310 bits (793), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 147/228 (64%), Positives = 186/228 (81%), Gaps = 2/228 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +R K+GVMFG+PE T GG ALKFYS+VRL++RR   +K    + GN+T
Sbjct: 179 IREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT 226


>gi|126567364|dbj|BAF48339.1| RecA protein [Amorphomonas oryzae]
          Length = 190

 Score =  310 bits (793), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 153/184 (83%), Positives = 171/184 (92%), Gaps = 1/184 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LG+  S+ E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 5   VDKSKALEAALSQIERNFGKGSIMKLGANESVVE-IETVSTGSLSLDIALGIGGLPKGRI 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 64  VEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG++LPGMQARLMSQALRKLT+S
Sbjct: 124 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDNLPGMQARLMSQALRKLTAS 183

Query: 190 ISRS 193
           ISRS
Sbjct: 184 ISRS 187


>gi|114767541|ref|ZP_01446295.1| recombinase A [Pelagibaca bermudensis HTCC2601]
 gi|114540394|gb|EAU43480.1| recombinase A [Roseovarius sp. HTCC2601]
          Length = 213

 Score =  310 bits (793), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 145/197 (73%), Positives = 174/197 (88%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +RSGAV ++V+DSVAALTP++E+EGDMG+S  G+QARLMSQA+RKLT SISRS C+++FI
Sbjct: 1   MRSGAVSLVVVDSVAALTPKSELEGDMGDSNVGVQARLMSQAMRKLTGSISRSNCMVIFI 60

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D + GNQTRVKVVKNK+A
Sbjct: 61  NQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRDEVVGNQTRVKVVKNKVA 120

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
            PFKQVEFDIMYGEGIS  GEL+DLGVKA +VDKSGAW+S+  +R+GQGREN+K FLREN
Sbjct: 121 PPFKQVEFDIMYGEGISKMGELLDLGVKAGVVDKSGAWYSYGDERIGQGRENAKTFLREN 180

Query: 321 IEIAENIESLLRQNAGL 337
             ++  IE  +R   GL
Sbjct: 181 SRVSLEIEDKIRAAHGL 197


>gi|110002969|emb|CAJ57771.1| recombinase A [Rhizobium huautlense]
          Length = 183

 Score =  310 bits (793), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 153/184 (83%), Positives = 170/184 (92%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  +I E IE VS+GSL LDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           RS C
Sbjct: 180 RSNC 183


>gi|18072444|emb|CAC87606.1| recA protein [Azotobacter beijerinckii]
          Length = 209

 Score =  310 bits (793), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 143/209 (68%), Positives = 181/209 (86%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA++QK G TCAFVDAE+ALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS 
Sbjct: 1   LSLIAEAQKQGATCAFVDAENALDPDYAAKLGVNVDDLLVSQPDTGEQALEITDMLVRSN 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           AVD+I++DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T +I  + C+++FINQ+R
Sbjct: 61  AVDVIIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNIKNANCLVIFINQIR 120

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++KD D + G++TRVKVVKNK+A PF+
Sbjct: 121 MKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKDSDEVVGSETRVKVVKNKVAPPFR 180

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVD 293
           Q EF I+YG+GI   GE+IDLGV+  +++
Sbjct: 181 QAEFQILYGKGIYRNGEIIDLGVQLGLLE 209


>gi|290795161|gb|ADD64595.1| RecA recombinase [Vibrio sp. FAL559]
          Length = 195

 Score =  309 bits (792), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 145/195 (74%), Positives = 171/195 (87%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +QK G TCAFVDAEH
Sbjct: 1   ETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIEG
Sbjct: 61  ALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKF
Sbjct: 121 EMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKF 180

Query: 226 YSSVRLDIRRVGSIK 240
           Y+SVRLDIRR G+IK
Sbjct: 181 YASVRLDIRRTGAIK 195


>gi|325650916|emb|CBY89641.1| RecA protein [Rhizobium sp. R-46040=B1009]
 gi|325650920|emb|CBY89643.1| RecA protein [Rhizobium sp. R-45990=B580T1]
 gi|325650922|emb|CBY89644.1| RecA protein [Rhizobium sp. R-45992=B589T1]
          Length = 183

 Score =  309 bits (792), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 151/184 (82%), Positives = 171/184 (92%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E +E +S+GSL LDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETISTGSLSLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVDI+V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDILVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +SKC
Sbjct: 180 KSKC 183


>gi|18076835|emb|CAC87584.1| recA protein [Pseudomonas agarici]
 gi|18076853|emb|CAC87593.1| recA protein [Pseudomonas fluorescens]
          Length = 199

 Score =  309 bits (792), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 143/199 (71%), Positives = 174/199 (87%)

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AV
Sbjct: 1   VIAQAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAV 60

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMK
Sbjct: 61  DVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+ASPF+Q 
Sbjct: 121 IGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVASPFRQA 180

Query: 267 EFDIMYGEGISFFGELIDL 285
           EF I+YG+GI   GE+IDL
Sbjct: 181 EFQILYGKGIYLNGEMIDL 199


>gi|213012388|gb|ACJ38760.1| recombination-repair protein [Photobacterium rosenbergii]
          Length = 197

 Score =  309 bits (792), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 142/197 (72%), Positives = 172/197 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAF+DAEHALD IYARKLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLEVIAAAQKQGKTCAFIDAEHALDPIYARKLGVDIDQLLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGAVDI+V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RK+T ++ +S C+
Sbjct: 61  ADALARSGAVDILVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKITGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMYG 273
           NK+A+PFKQ E  I+YG
Sbjct: 181 NKIAAPFKQAETQILYG 197


>gi|115498183|gb|ABI98671.1| RecA [Sinorhizobium sp. CCBAU 53044]
          Length = 183

 Score =  309 bits (791), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 149/184 (80%), Positives = 171/184 (92%), Gaps = 1/184 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL 
Sbjct: 1   FGKGSVMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+
Sbjct: 60  TIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 120 DILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 179

Query: 207 IGVM 210
           IGVM
Sbjct: 180 IGVM 183


>gi|317449032|emb|CBX31917.1| RecA protein [Rhizobium tibeticum]
 gi|317449034|emb|CBX31918.1| RecA protein [Rhizobium tibeticum]
          Length = 183

 Score =  309 bits (791), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 152/183 (83%), Positives = 171/183 (93%), Gaps = 1/183 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  S+ E IE VS+GSLGLDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNESVVE-IETVSTGSLGLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSK 194
           +SK
Sbjct: 180 KSK 182


>gi|311692217|dbj|BAJ25723.1| recombinase A [Rhizobium sp. T141]
          Length = 188

 Score =  309 bits (791), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 149/189 (78%), Positives = 175/189 (92%), Gaps = 1/189 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKCILVFI 200
           +S  +++FI
Sbjct: 180 KSNTMVIFI 188


>gi|110003001|emb|CAJ57787.1| recombinase A [Sinorhizobium fredii]
 gi|110003003|emb|CAJ57788.1| recombinase A [Sinorhizobium fredii]
 gi|110003005|emb|CAJ57789.1| recombinase A [Sinorhizobium fredii]
 gi|110003009|emb|CAJ57791.1| recombinase A [Sinorhizobium xinjiangense]
 gi|110003011|emb|CAJ57792.1| recombinase A [Sinorhizobium xinjiangense]
          Length = 183

 Score =  309 bits (791), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 152/184 (82%), Positives = 170/184 (92%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|325650900|emb|CBY89633.1| RecA protein [Rhizobium sp. R-45761=1599]
          Length = 183

 Score =  309 bits (791), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 153/183 (83%), Positives = 170/183 (92%), Gaps = 1/183 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  SI E IE VS+GSL LDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNDSIVE-IETVSTGSLSLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEGDMG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSK 194
           +SK
Sbjct: 180 KSK 182


>gi|117675769|emb|CAL69155.1| recombinase A [Mycetocola saprophilus]
 gi|117675771|emb|CAL69156.1| recombinase A [Mycetocola lacteus]
          Length = 218

 Score =  309 bits (791), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 147/214 (68%), Positives = 177/214 (82%)

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTL LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI D
Sbjct: 1   GKTTLTLHAIANAQRQGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIAD 60

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           ML+RSG++D++VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T  ++++K   +
Sbjct: 61  MLIRSGSIDLVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGGLNQTKTTAI 120

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           FINQ+R KIGV FGSPETT+GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNK
Sbjct: 121 FINQLREKIGVFFGSPETTSGGKALKFYASVRLDIRRIETLKDGSDAVGNRTRVKVVKNK 180

Query: 259 MASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           MA PFKQ EFDI+YG GIS  G LID GV+  +V
Sbjct: 181 MAPPFKQAEFDILYGVGISREGSLIDFGVEHGLV 214


>gi|213012328|gb|ACJ38730.1| recombination-repair protein [Vibrio mediterranei]
 gi|213012438|gb|ACJ38785.1| recombination-repair protein [Vibrio mediterranei]
 gi|213012450|gb|ACJ38791.1| recombination-repair protein [Vibrio mediterranei]
 gi|213012464|gb|ACJ38798.1| recombination-repair protein [Vibrio mediterranei]
 gi|213012466|gb|ACJ38799.1| recombination-repair protein [Vibrio mediterranei]
 gi|213012470|gb|ACJ38801.1| recombination-repair protein [Vibrio mediterranei]
 gi|213012512|gb|ACJ38822.1| recombination-repair protein [Vibrio mediterranei]
 gi|213012514|gb|ACJ38823.1| recombination-repair protein [Vibrio mediterranei]
 gi|213012556|gb|ACJ38844.1| recombination-repair protein [Vibrio mediterranei]
 gi|213012566|gb|ACJ38849.1| recombination-repair protein [Vibrio mediterranei]
          Length = 197

 Score =  309 bits (791), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 141/197 (71%), Positives = 173/197 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAF+DAEHALD IYA+KLGVD+ +LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPIYAKKLGVDIDSLLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMYG 273
           NK+A+PFKQ E  I+YG
Sbjct: 181 NKIAAPFKQAETQILYG 197


>gi|68349493|gb|AAY96638.1| RecA [Mesorhizobium sp. ICMP 11736]
          Length = 191

 Score =  309 bits (791), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 147/190 (77%), Positives = 174/190 (91%), Gaps = 1/190 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 3   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVF 199
           ISRS  +++F
Sbjct: 182 ISRSNTMVIF 191


>gi|117675801|emb|CAL69171.1| recombinase A [Clavibacter michiganensis subsp. tessellarius]
 gi|117675803|emb|CAL69172.1| recombinase A [Clavibacter michiganensis subsp. sepedonicus]
          Length = 214

 Score =  308 bits (790), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 148/214 (69%), Positives = 176/214 (82%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DMLV
Sbjct: 1   TLTLHAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG++D++VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  +++++  ++FIN
Sbjct: 61  RSGSIDLVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTQTTMIFIN 120

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA 
Sbjct: 121 QLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVGNRTRVKVVKNKMAP 180

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           PFKQ EFDI+YG GIS  G LID GV+  IV KS
Sbjct: 181 PFKQAEFDILYGTGISREGSLIDFGVEHEIVRKS 214


>gi|18076865|emb|CAC87599.1| recA protein [Pseudomonas putida]
          Length = 199

 Score =  308 bits (790), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 142/199 (71%), Positives = 174/199 (87%)

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AV
Sbjct: 1   VIAQAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAV 60

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMK
Sbjct: 61  DVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A+PF+Q 
Sbjct: 121 IGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAAPFRQT 180

Query: 267 EFDIMYGEGISFFGELIDL 285
           EF I+YG+GI   GE+IDL
Sbjct: 181 EFQILYGKGIYLNGEMIDL 199


>gi|198385741|gb|ACH86214.1| RecA [Rhizobium sp. T1155]
 gi|198385743|gb|ACH86215.1| RecA [Rhizobium sp. T1470]
          Length = 183

 Score =  308 bits (790), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 152/182 (83%), Positives = 170/182 (93%), Gaps = 1/182 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  S+ E IE VS+GSLGLDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNESVVE-IETVSTGSLGLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 IS 191
           IS
Sbjct: 182 IS 183


>gi|213012310|gb|ACJ38721.1| recombination-repair protein [Vibrio chagasii]
 gi|213012484|gb|ACJ38808.1| recombination-repair protein [Vibrio chagasii]
 gi|213012508|gb|ACJ38820.1| recombination-repair protein [Vibrio chagasii]
          Length = 197

 Score =  308 bits (790), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 143/197 (72%), Positives = 172/197 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMYG 273
           NK+A+PFKQ E  I+YG
Sbjct: 181 NKIAAPFKQAETQILYG 197


>gi|110002983|emb|CAJ57778.1| recombinase A [Sinorhizobium medicae]
 gi|110002987|emb|CAJ57780.1| recombinase A [Sinorhizobium medicae]
 gi|317453436|emb|CBX31936.1| RecA protein [Sinorhizobium medicae]
 gi|325651073|emb|CBY89358.1| RecA protein [Sinorhizobium medicae]
 gi|325651075|emb|CBY89359.1| RecA protein [Sinorhizobium medicae]
 gi|325651077|emb|CBY89360.1| RecA protein [Sinorhizobium medicae]
 gi|325651079|emb|CBY89361.1| RecA protein [Sinorhizobium medicae]
 gi|325651081|emb|CBY89362.1| RecA protein [Sinorhizobium medicae]
 gi|325651085|emb|CBY89364.1| RecA protein [Sinorhizobium medicae]
 gi|325651087|emb|CBY89365.1| RecA protein [Sinorhizobium medicae]
 gi|325651089|emb|CBY89366.1| RecA protein [Sinorhizobium medicae]
 gi|325651093|emb|CBY89368.1| RecA protein [Sinorhizobium medicae]
 gi|325651095|emb|CBY89369.1| RecA protein [Sinorhizobium medicae]
 gi|325651097|emb|CBY89370.1| RecA protein [Sinorhizobium medicae]
 gi|325651099|emb|CBY89371.1| RecA protein [Sinorhizobium medicae]
 gi|325651101|emb|CBY89372.1| RecA protein [Sinorhizobium medicae]
 gi|325651103|emb|CBY89373.1| RecA protein [Sinorhizobium medicae]
 gi|325651105|emb|CBY89374.1| RecA protein [Sinorhizobium medicae]
 gi|325651107|emb|CBY89375.1| RecA protein [Sinorhizobium medicae]
 gi|325651109|emb|CBY89376.1| RecA protein [Sinorhizobium medicae]
 gi|325651111|emb|CBY89377.1| RecA protein [Sinorhizobium medicae]
 gi|325651113|emb|CBY89378.1| RecA protein [Sinorhizobium medicae]
 gi|325651115|emb|CBY89379.1| RecA protein [Sinorhizobium medicae]
 gi|325651117|emb|CBY89380.1| RecA protein [Sinorhizobium medicae]
 gi|325651119|emb|CBY89381.1| RecA protein [Sinorhizobium medicae]
 gi|325651121|emb|CBY89382.1| RecA protein [Sinorhizobium medicae]
 gi|325651123|emb|CBY89383.1| RecA protein [Sinorhizobium medicae]
 gi|325651125|emb|CBY89384.1| RecA protein [Sinorhizobium medicae]
 gi|325651127|emb|CBY89385.1| RecA protein [Sinorhizobium medicae]
 gi|325651129|emb|CBY89386.1| RecA protein [Sinorhizobium medicae]
          Length = 183

 Score =  308 bits (790), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 151/184 (82%), Positives = 170/184 (92%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERAFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|213012558|gb|ACJ38845.1| recombination-repair protein [Vibrio cincinnatiensis]
          Length = 197

 Score =  308 bits (790), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 142/197 (72%), Positives = 171/197 (86%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAF+DAEHALD IYARKLGV++  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLECIAAAQKNGKTCAFIDAEHALDPIYARKLGVNIDELLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QARL+SQ++RK+T ++  S C+
Sbjct: 61  CDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARLLSQSMRKMTGNLKASNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMYG 273
           NK+A+PFKQ E  I+YG
Sbjct: 181 NKIAAPFKQAETQILYG 197


>gi|213012372|gb|ACJ38752.1| recombination-repair protein [Photobacterium sp. R-89]
 gi|213012374|gb|ACJ38753.1| recombination-repair protein [Photobacterium sp. R-90]
          Length = 197

 Score =  308 bits (790), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 142/197 (72%), Positives = 172/197 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLEAIACAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMYG 273
           NK+A+PFKQ E  I+YG
Sbjct: 181 NKVAAPFKQAETQILYG 197


>gi|317449036|emb|CBX31919.1| RecA protein [Sinorhizobium meliloti]
 gi|317453414|emb|CBX31925.1| RecA protein [Sinorhizobium meliloti]
 gi|317453420|emb|CBX31928.1| RecA protein [Sinorhizobium meliloti]
 gi|325651069|emb|CBY89356.1| RecA protein [Sinorhizobium kummerowiae]
 gi|325651071|emb|CBY89357.1| RecA protein [Sinorhizobium kummerowiae]
          Length = 183

 Score =  308 bits (789), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 152/184 (82%), Positives = 170/184 (92%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|325651163|emb|CBY89403.1| RecA protein [Sinorhizobium meliloti]
 gi|325651165|emb|CBY89404.1| RecA protein [Sinorhizobium meliloti]
          Length = 183

 Score =  308 bits (789), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 152/184 (82%), Positives = 170/184 (92%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|213012440|gb|ACJ38786.1| recombination-repair protein [Vibrio sinaloensis]
 gi|213012458|gb|ACJ38795.1| recombination-repair protein [Vibrio sinaloensis]
 gi|213012580|gb|ACJ38856.1| recombination-repair protein [Vibrio sinaloensis]
          Length = 197

 Score =  308 bits (789), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 142/197 (72%), Positives = 172/197 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMYG 273
           NK+A+PFKQ E  I+YG
Sbjct: 181 NKIAAPFKQAETQILYG 197


>gi|110002989|emb|CAJ57781.1| recombinase A [Sinorhizobium saheli]
 gi|110002991|emb|CAJ57782.1| recombinase A [Sinorhizobium saheli]
          Length = 183

 Score =  308 bits (789), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 149/184 (80%), Positives = 171/184 (92%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG++LPGMQARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDNLPGMQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|110003017|emb|CAJ57795.1| recombinase A [Sinorhizobium terangae]
 gi|110003019|emb|CAJ57796.1| recombinase A [Sinorhizobium terangae]
 gi|110003021|emb|CAJ57797.1| recombinase A [Sinorhizobium terangae]
          Length = 183

 Score =  308 bits (788), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 150/184 (81%), Positives = 170/184 (92%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|198385747|gb|ACH86217.1| RecA [Sinorhizobium meliloti]
 gi|198385749|gb|ACH86218.1| RecA [Sinorhizobium meliloti]
          Length = 186

 Score =  308 bits (788), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 152/184 (82%), Positives = 171/184 (92%), Gaps = 1/184 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 181

Query: 190 ISRS 193
           IS+S
Sbjct: 182 ISKS 185


>gi|187235576|gb|ACD02001.1| putative recombinase A [Clostridium septicum]
          Length = 205

 Score =  308 bits (788), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 142/204 (69%), Positives = 174/204 (85%)

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            A++DAEHALD  YAR LGVD ++L++SQPDTGEQALEI + LVRSGA+D+IVIDSVAAL
Sbjct: 1   AAYIDAEHALDPSYARNLGVDTESLIVSQPDTGEQALEIAEALVRSGAIDVIVIDSVAAL 60

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
            PRAEIEG+MG+S  G+QARLMSQALRKLT +I ++ C+ +FINQ+R K+GVMFG+PETT
Sbjct: 61  VPRAEIEGEMGDSHVGLQARLMSQALRKLTGTIQKTGCVAIFINQLREKVGVMFGNPETT 120

Query: 218 TGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277
           TGG ALKFY+SVRLD+RR+ SIK  + I GN+TRVKV+KNK+A PFKQ EFDIMY EGIS
Sbjct: 121 TGGRALKFYASVRLDVRRIDSIKQGEGIVGNRTRVKVMKNKVAPPFKQAEFDIMYNEGIS 180

Query: 278 FFGELIDLGVKASIVDKSGAWFSF 301
             G ++D+GVK  I+ KSGAWFS+
Sbjct: 181 RTGNIVDVGVKEGIIQKSGAWFSY 204


>gi|198385761|gb|ACH86224.1| RecA [Sinorhizobium meliloti]
          Length = 185

 Score =  308 bits (788), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 152/184 (82%), Positives = 171/184 (92%), Gaps = 1/184 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 181

Query: 190 ISRS 193
           IS+S
Sbjct: 182 ISKS 185


>gi|110002995|emb|CAJ57784.1| recombinase A [Sinorhizobium kostiense]
 gi|110002997|emb|CAJ57785.1| recombinase A [Sinorhizobium kostiense]
          Length = 183

 Score =  308 bits (788), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 150/184 (81%), Positives = 170/184 (92%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERAFGKGSIMKLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG++LPGMQARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDNLPGMQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|213012462|gb|ACJ38797.1| recombination-repair protein [Vibrio tubiashii]
 gi|213012492|gb|ACJ38812.1| recombination-repair protein [Vibrio tubiashii]
 gi|213012496|gb|ACJ38814.1| recombination-repair protein [Vibrio tubiashii]
 gi|213012498|gb|ACJ38815.1| recombination-repair protein [Vibrio tubiashii]
 gi|213012568|gb|ACJ38850.1| recombination-repair protein [Vibrio tubiashii]
 gi|213012578|gb|ACJ38855.1| recombination-repair protein [Vibrio tubiashii]
          Length = 197

 Score =  308 bits (788), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 140/197 (71%), Positives = 172/197 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMYG 273
           NK+A+PFKQ E  I+YG
Sbjct: 181 NKIAAPFKQAETQILYG 197


>gi|225008768|gb|ACN78932.1| RecA [Rhizobium sp. PETP01]
          Length = 185

 Score =  308 bits (788), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 150/184 (81%), Positives = 172/184 (93%), Gaps = 1/184 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRS 193
           IS+S
Sbjct: 182 ISKS 185


>gi|110002977|emb|CAJ57775.1| recombinase A [Sinorhizobium meliloti]
 gi|110002979|emb|CAJ57776.1| recombinase A [Sinorhizobium meliloti]
 gi|317453404|emb|CBX31920.1| RecA protein [Sinorhizobium meliloti]
 gi|317453406|emb|CBX31921.1| RecA protein [Sinorhizobium meliloti]
 gi|317453408|emb|CBX31922.1| RecA protein [Sinorhizobium meliloti]
 gi|317453410|emb|CBX31923.1| RecA protein [Sinorhizobium meliloti]
 gi|317453412|emb|CBX31924.1| RecA protein [Sinorhizobium meliloti]
 gi|317453416|emb|CBX31926.1| RecA protein [Sinorhizobium meliloti]
 gi|317453418|emb|CBX31927.1| RecA protein [Sinorhizobium meliloti]
 gi|317453422|emb|CBX31929.1| RecA protein [Sinorhizobium meliloti]
 gi|317453424|emb|CBX31930.1| RecA protein [Sinorhizobium meliloti]
 gi|317453426|emb|CBX31931.1| RecA protein [Sinorhizobium meliloti]
 gi|325651131|emb|CBY89387.1| RecA protein [Sinorhizobium meliloti]
 gi|325651133|emb|CBY89388.1| RecA protein [Sinorhizobium meliloti]
 gi|325651135|emb|CBY89389.1| RecA protein [Sinorhizobium meliloti]
 gi|325651141|emb|CBY89392.1| RecA protein [Sinorhizobium meliloti]
 gi|325651145|emb|CBY89394.1| RecA protein [Sinorhizobium meliloti]
 gi|325651147|emb|CBY89395.1| RecA protein [Sinorhizobium meliloti]
 gi|325651149|emb|CBY89396.1| RecA protein [Sinorhizobium meliloti]
 gi|325651151|emb|CBY89397.1| RecA protein [Sinorhizobium meliloti]
 gi|325651153|emb|CBY89398.1| RecA protein [Sinorhizobium meliloti]
 gi|325651155|emb|CBY89399.1| RecA protein [Sinorhizobium meliloti]
 gi|325651157|emb|CBY89400.1| RecA protein [Sinorhizobium meliloti]
 gi|325651159|emb|CBY89401.1| RecA protein [Sinorhizobium meliloti]
 gi|325651161|emb|CBY89402.1| RecA protein [Sinorhizobium meliloti]
 gi|325651167|emb|CBY89405.1| RecA protein [Sinorhizobium meliloti]
 gi|325651169|emb|CBY89406.1| RecA protein [Sinorhizobium meliloti]
 gi|325651171|emb|CBY89407.1| RecA protein [Sinorhizobium meliloti]
 gi|325651173|emb|CBY89408.1| RecA protein [Sinorhizobium meliloti]
          Length = 183

 Score =  308 bits (788), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 151/184 (82%), Positives = 170/184 (92%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|262064658|gb|ACY07563.1| recombinase A [Rhizobium sp. RPVR24]
          Length = 191

 Score =  308 bits (788), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 150/188 (79%), Positives = 173/188 (92%), Gaps = 1/188 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P
Sbjct: 4   EXKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLP 62

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 63  RGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 122

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 123 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 182

Query: 186 LTSSISRS 193
           LT+SIS+S
Sbjct: 183 LTASISKS 190


>gi|325650902|emb|CBY89634.1| RecA protein [Rhizobium sp. R-45818=1931]
 gi|325650904|emb|CBY89635.1| RecA protein [Rhizobium sp. R-45819=1932]
 gi|325651219|emb|CBY89431.1| RecA protein [Rhizobium giardinii]
          Length = 183

 Score =  307 bits (787), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 152/184 (82%), Positives = 170/184 (92%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGGKDSIVE-IETVSTGSLSLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|110558997|gb|ABG75859.1| RecA [Agrobacterium rhizogenes]
          Length = 188

 Score =  307 bits (787), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 151/184 (82%), Positives = 171/184 (92%), Gaps = 1/184 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 4   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 63  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 123 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 182

Query: 190 ISRS 193
           IS+S
Sbjct: 183 ISKS 186


>gi|262064656|gb|ACY07562.1| recombinase A [Rhizobium sp. RPVR04]
          Length = 190

 Score =  307 bits (787), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 150/188 (79%), Positives = 173/188 (92%), Gaps = 1/188 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P
Sbjct: 4   EXKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLP 62

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 63  RGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 122

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 123 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 182

Query: 186 LTSSISRS 193
           LT+SIS+S
Sbjct: 183 LTASISKS 190


>gi|110003015|emb|CAJ57794.1| recombinase A [Ensifer adhaerens]
          Length = 183

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 152/184 (82%), Positives = 169/184 (91%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+D++VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDVLVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|25005286|emb|CAD44251.1| RecA protein [Ensifer adhaerens]
          Length = 183

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 152/184 (82%), Positives = 169/184 (91%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD IYARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPIYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|47109404|emb|CAG28698.1| recA [Propionibacterium acidipropionici]
          Length = 216

 Score =  307 bits (786), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 147/218 (67%), Positives = 180/218 (82%), Gaps = 2/218 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           +M+LG + ++   I  + +GS+ LD+ALG+GG P+GRIVEIYGPES GKTTLALH IA +
Sbjct: 1   VMRLGDRETV--KIPAIPTGSVALDVALGVGGLPRGRIVEIYGPESGGKTTLALHAIANA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           Q  GG CAF+DAEHALD  YA+ LGVD  NLLISQPD GEQALEI D LVRSGA+++IVI
Sbjct: 59  QAEGGICAFIDAEHALDPEYAKNLGVDTDNLLISQPDNGEQALEIADTLVRSGALELIVI 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAALTP+AEIEGDMG+S  G+QARLMSQALRK+T ++S +    +FINQ+R KIGVMF
Sbjct: 119 DSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKMTGALSGAGTTAIFINQLREKIGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           G+PETTTGG ALKFYSSVRLD+RR+ ++KD D + GN+
Sbjct: 179 GNPETTTGGRALKFYSSVRLDVRRIQTLKDGDEMVGNR 216


>gi|6694829|gb|AAF25414.1|AF214767_1 RecA protein [Arthrobacter sp. 'SMCC G979']
          Length = 209

 Score =  307 bits (786), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 143/209 (68%), Positives = 174/209 (83%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD   LL
Sbjct: 1   LPRGRVVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDAEHALDPEYAAKLGVDTDALL 60

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIEGDMG+S  G+QARLMSQAL
Sbjct: 61  VSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQARLMSQAL 120

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ ++K+  
Sbjct: 121 RKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQTLKEGA 180

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMY 272
              GN+T+ K+VKNKMA PFK  EFDI+Y
Sbjct: 181 DSVGNRTKAKIVKNKMAPPFKVAEFDIIY 209


>gi|117675795|emb|CAL69168.1| recombinase A [Curtobacterium citreum]
          Length = 216

 Score =  307 bits (786), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 147/216 (68%), Positives = 175/216 (81%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DML
Sbjct: 1   TTLTLHAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIADML 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSG++D+IV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL   +++++  ++FI
Sbjct: 61  VRSGSIDLIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGGLNQTQTTMIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++K      GN+TRVKVVKNKMA
Sbjct: 121 NQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKSGTDAVGNRTRVKVVKNKMA 180

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
            PFKQ EFDI+YG GIS  G L+D GV   IV KSG
Sbjct: 181 PPFKQAEFDILYGTGISREGSLLDFGVDHGIVKKSG 216


>gi|18076847|emb|CAC87590.1| recA protein [Pseudomonas fluorescens]
 gi|18076849|emb|CAC87591.1| recA protein [Pseudomonas fluorescens]
 gi|18076851|emb|CAC87592.1| recA protein [Pseudomonas fluorescens]
 gi|18076855|emb|CAC87594.1| recA protein [Pseudomonas fluorescens]
 gi|18076857|emb|CAC87595.1| recA protein [Pseudomonas fluorescens]
 gi|18076875|emb|CAC87604.1| recA protein [Pseudomonas tolaasii]
          Length = 199

 Score =  307 bits (786), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 142/199 (71%), Positives = 173/199 (86%)

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+
Sbjct: 1   VIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAI 60

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMK
Sbjct: 61  DVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q 
Sbjct: 121 IGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQA 180

Query: 267 EFDIMYGEGISFFGELIDL 285
           EF I+YG+GI   GE+IDL
Sbjct: 181 EFQILYGKGIYLNGEMIDL 199


>gi|110002973|emb|CAJ57773.1| recombinase A [Sinorhizobium arboris LMG 14919]
          Length = 183

 Score =  307 bits (786), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 150/184 (81%), Positives = 170/184 (92%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|118767313|gb|ABL11492.1| RecA [Rhizobium sp. PEVF09]
 gi|225008770|gb|ACN78933.1| RecA [Rhizobium sp. PETP05]
          Length = 186

 Score =  307 bits (786), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 149/184 (80%), Positives = 172/184 (93%), Gaps = 1/184 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRS 193
           IS+S
Sbjct: 182 ISKS 185


>gi|18076843|emb|CAC87588.1| recA protein [Pseudomonas cichorii]
          Length = 199

 Score =  307 bits (786), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 142/199 (71%), Positives = 173/199 (86%)

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AV
Sbjct: 1   VIAQAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAV 60

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMK
Sbjct: 61  DVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVK+VKNK+A PF+Q 
Sbjct: 121 IGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKIVKNKVAPPFRQA 180

Query: 267 EFDIMYGEGISFFGELIDL 285
           EF I+YG+GI   GE+IDL
Sbjct: 181 EFQILYGKGIYLNGEIIDL 199


>gi|262064652|gb|ACY07560.1| recombinase A [Rhizobium leguminosarum]
 gi|262064660|gb|ACY07564.1| recombinase A [Rhizobium sp. RPVR32]
          Length = 185

 Score =  307 bits (786), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 149/184 (80%), Positives = 172/184 (93%), Gaps = 1/184 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRS 193
           IS+S
Sbjct: 182 ISKS 185


>gi|115498187|gb|ABI98673.1| RecA [Sinorhizobium sp. CCBAU 33036]
          Length = 182

 Score =  307 bits (786), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 148/183 (80%), Positives = 170/183 (92%), Gaps = 1/183 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL 
Sbjct: 1   FGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+
Sbjct: 60  TIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 120 DVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 179

Query: 207 IGV 209
           IGV
Sbjct: 180 IGV 182


>gi|1172878|sp|Q08784|RECA_ACEAC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|4261615|gb|AAD13915.1|S60630_1 Unknown [Acetobacter aceti]
 gi|602761|dbj|BAA02479.1| RecA protein [Acetobacter aceti]
          Length = 182

 Score =  307 bits (786), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 143/180 (79%), Positives = 165/180 (91%)

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NLLISQPD GEQALEI D LVRSGAVD++V+DSVAAL PRAE+EGDMG+S  G+ ARLMS
Sbjct: 3   NLLISQPDAGEQALEIADTLVRSGAVDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMS 62

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT +++RS  +++F+NQ+R+KIGVMFG+PETTTGGNALKFYSSVR+DIRR+GSIK
Sbjct: 63  QALRKLTGTVARSNTLMIFLNQIRLKIGVMFGNPETTTGGNALKFYSSVRMDIRRIGSIK 122

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           DKD +TGNQTRVKVVKNKMA PF+QVEFDIMYGEGIS  GELIDLGVKA +V+KSGAWFS
Sbjct: 123 DKDEVTGNQTRVKVVKNKMAPPFRQVEFDIMYGEGISKVGELIDLGVKAGVVEKSGAWFS 182


>gi|90193547|gb|ABD92366.1| RecA [Rhizobium lusitanum]
          Length = 186

 Score =  307 bits (786), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 151/184 (82%), Positives = 171/184 (92%), Gaps = 1/184 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRS 193
           IS+S
Sbjct: 182 ISKS 185


>gi|110558993|gb|ABG75857.1| RecA [Rhizobium tropici]
          Length = 187

 Score =  307 bits (786), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 150/184 (81%), Positives = 171/184 (92%), Gaps = 1/184 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRS 193
           IS+S
Sbjct: 182 ISKS 185


>gi|18076837|emb|CAC87585.1| recA protein [Pseudomonas aurantiaca]
 gi|18076839|emb|CAC87586.1| recA protein [Pseudomonas chlororaphis]
 gi|18076841|emb|CAC87587.1| recA protein [Pseudomonas chlororaphis]
          Length = 199

 Score =  306 bits (785), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 142/199 (71%), Positives = 173/199 (86%)

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+
Sbjct: 1   VIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAI 60

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMK
Sbjct: 61  DVIVIDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVK+VKNK+A PF+Q 
Sbjct: 121 IGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKIVKNKVAPPFRQA 180

Query: 267 EFDIMYGEGISFFGELIDL 285
           EF I+YG+GI   GE+IDL
Sbjct: 181 EFQILYGKGIYLNGEIIDL 199


>gi|117675799|emb|CAL69170.1| recombinase A [Curtobacterium herbarum]
          Length = 217

 Score =  306 bits (785), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 147/217 (67%), Positives = 177/217 (81%)

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTL +H IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDT EQALEI DM
Sbjct: 1   KTTLTIHAIANAQRNGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTAEQALEIADM 60

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           LVRSG++D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL   +++++  ++F
Sbjct: 61  LVRSGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGGLNQTQTTMIF 120

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           INQ+R KIGV FGSPETT+GG ALKFY+SVRLDIRR+ ++K      GN+TRVKVVKNKM
Sbjct: 121 INQLREKIGVFFGSPETTSGGKALKFYASVRLDIRRIETLKTGTEAVGNRTRVKVVKNKM 180

Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
           A PFKQ EFDI+YG GIS  G L+D GV  +IV KSG
Sbjct: 181 APPFKQAEFDILYGVGISREGSLLDFGVDHNIVKKSG 217


>gi|25005322|emb|CAD44255.1| RecA protein [Ensifer adhaerens]
          Length = 183

 Score =  306 bits (785), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 151/184 (82%), Positives = 169/184 (91%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+D++VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDVLVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|307343155|emb|CBJ18107.1| recombinase A [Micromonospora echinofusca]
          Length = 206

 Score =  306 bits (785), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 144/206 (69%), Positives = 173/206 (83%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   LL+SQPDTGEQALEITDMLVRSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDALLVSQPDTGEQALEITDMLVRSGAIDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVK 253
           SVRLD+RR+ S+KD   + GN+T  K
Sbjct: 181 SVRLDVRRIESLKDGTDVVGNRTHSK 206


>gi|213012436|gb|ACJ38784.1| recombination-repair protein [Vibrio mediterranei]
          Length = 196

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 140/196 (71%), Positives = 172/196 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAF+DAEHALD IYA+KLGVD+ +LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPIYAKKLGVDIDSLLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMY 272
           NK+A+PFKQ E  I+Y
Sbjct: 181 NKIAAPFKQAETQILY 196


>gi|99866637|gb|ABF67656.1| RecA [Pectobacterium carotovorum]
          Length = 204

 Score =  306 bits (784), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 144/204 (70%), Positives = 174/204 (85%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD
Sbjct: 1   STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G
Sbjct: 61  PIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIGVMFG+PETTTGGNALK Y S
Sbjct: 121 DSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKXYXS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRV 252
           VRLDIRR G+IK+ + + G++TRV
Sbjct: 181 VRLDIRRTGAIKEGEEVVGSETRV 204


>gi|325650896|emb|CBY89631.1| RecA protein [Agrobacterium tumefaciens]
          Length = 183

 Score =  306 bits (784), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 150/184 (81%), Positives = 170/184 (92%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +SKC
Sbjct: 180 KSKC 183


>gi|25005282|emb|CAD44249.1| RecA protein [Ensifer adhaerens]
 gi|25005284|emb|CAD44250.1| RecA protein [Ensifer adhaerens]
          Length = 183

 Score =  306 bits (784), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 150/184 (81%), Positives = 169/184 (91%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|325651229|emb|CBY89436.1| RecA protein [Rhizobium leguminosarum]
          Length = 187

 Score =  306 bits (784), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 147/187 (78%), Positives = 173/187 (92%), Gaps = 1/187 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           ALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYG
Sbjct: 1   ALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQAL
Sbjct: 60  PESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S 
Sbjct: 120 EITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSN 179

Query: 195 CILVFIN 201
            +++FIN
Sbjct: 180 TMVIFIN 186


>gi|213012402|gb|ACJ38767.1| recombination-repair protein [Vibrio sp. R-616]
          Length = 196

 Score =  306 bits (784), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 139/196 (70%), Positives = 171/196 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLECIAAAQKAGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMY 272
           NK+A+PFKQ E  I+Y
Sbjct: 181 NKIAAPFKQAETQILY 196


>gi|117675807|emb|CAL69174.1| recombinase A [Clavibacter michiganensis subsp. michiganensis]
 gi|117675809|emb|CAL69175.1| recombinase A [Clavibacter michiganensis subsp. nebraskensis]
          Length = 212

 Score =  306 bits (784), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 146/211 (69%), Positives = 174/211 (82%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DMLV
Sbjct: 1   TLTLHAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG++D++VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  +++++  ++FIN
Sbjct: 61  RSGSIDLVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTQTTMIFIN 120

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA 
Sbjct: 121 QLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVGNRTRVKVVKNKMAP 180

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           PFKQ EFDI+YG GIS  G LID GV+  IV
Sbjct: 181 PFKQAEFDILYGTGISREGSLIDFGVEHEIV 211


>gi|330448874|gb|AEC23354.1| recombinase A [Vibrio sp. 15648_07]
          Length = 200

 Score =  306 bits (784), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 141/195 (72%), Positives = 171/195 (87%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 6   VETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQRAGKTCAFIDAE 65

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIE
Sbjct: 66  HALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIE 125

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 126 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALK 185

Query: 225 FYSSVRLDIRRVGSI 239
           FY+SVRLDIRR G++
Sbjct: 186 FYASVRLDIRRTGAV 200


>gi|68349491|gb|AAY96637.1| RecA [Mesorhizobium sp. ICMP 15054]
          Length = 190

 Score =  306 bits (784), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 146/189 (77%), Positives = 173/189 (91%), Gaps = 1/189 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 3   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILV 198
           ISRS  +++
Sbjct: 182 ISRSNTMVI 190


>gi|117675793|emb|CAL69167.1| recombinase A [Curtobacterium flaccumfaciens pv. betae]
          Length = 217

 Score =  306 bits (784), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 147/217 (67%), Positives = 176/217 (81%)

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTL +H IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDT EQALEI D
Sbjct: 1   GKTTLTIHAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTAEQALEIAD 60

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           MLVRSG++D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL   +++++  ++
Sbjct: 61  MLVRSGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGGLNQTQTTMI 120

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           FINQ+R KIGV FGSPETT+GG ALKFY+SVRLDIRR+ ++K      GN+TRVKVVKNK
Sbjct: 121 FINQLREKIGVFFGSPETTSGGKALKFYASVRLDIRRIETLKSGTDAVGNRTRVKVVKNK 180

Query: 259 MASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           MA PFKQ EFDI+YG GIS  G L+D GV   IV KS
Sbjct: 181 MAPPFKQAEFDILYGVGISREGSLLDFGVDHGIVKKS 217


>gi|213012444|gb|ACJ38788.1| recombination-repair protein [Listonella pelagia]
          Length = 197

 Score =  306 bits (783), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 141/197 (71%), Positives = 172/197 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQREGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR++VVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIQVVK 180

Query: 257 NKMASPFKQVEFDIMYG 273
           NK+A+PFKQ E  I+YG
Sbjct: 181 NKIAAPFKQAETQILYG 197


>gi|325651091|emb|CBY89367.1| RecA protein [Sinorhizobium medicae]
          Length = 183

 Score =  306 bits (783), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 150/184 (81%), Positives = 169/184 (91%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+  +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIEXAFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|112791534|gb|ABI22037.1| recombinase A [Brenneria quercina]
          Length = 196

 Score =  306 bits (783), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 141/196 (71%), Positives = 171/196 (87%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQRKGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FI
Sbjct: 61  ARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSSTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IKD D + G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKDGDEVVGSETRVKVVKNKVA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF IMYGEGI
Sbjct: 181 APFKQAEFQIMYGEGI 196


>gi|99866643|gb|ABF67659.1| RecA [Pectobacterium carotovorum]
          Length = 204

 Score =  306 bits (783), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 143/204 (70%), Positives = 174/204 (85%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD
Sbjct: 1   STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G
Sbjct: 61  PIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+ 
Sbjct: 121 DSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYAX 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRV 252
           VRLDIRR G+I + + + G++TRV
Sbjct: 181 VRLDIRRTGAIXEGEXVVGSETRV 204


>gi|290795155|gb|ADD64592.1| RecA recombinase [Vibrio ordalii]
          Length = 204

 Score =  306 bits (783), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 145/206 (70%), Positives = 177/206 (85%), Gaps = 2/206 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSGA+D
Sbjct: 59  IAAAQRVGKTCAFIDAEHALDPIYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAID 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VIVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDI 233
           GVMFG+PETTTGGNALKFY+SVRLDI
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDI 204


>gi|118405789|gb|ABK81260.1| recombinase A [Azotobacter beijerinckii]
          Length = 197

 Score =  306 bits (783), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 140/197 (71%), Positives = 173/197 (87%)

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+
Sbjct: 1   AEAQKQGATCAFVDAEHALDPDYAAKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDV 60

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T +I  + C+++FINQ+RMKIG
Sbjct: 61  IIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIG 120

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G++KD D + G++TRVKVVKNK+A PF+Q EF
Sbjct: 121 VMFGNPETTTGGNALKFYASVRLDIRRTGAVKDSDEVVGSETRVKVVKNKVAPPFRQAEF 180

Query: 269 DIMYGEGISFFGELIDL 285
            I+YG+GI   GE+IDL
Sbjct: 181 QILYGKGIYRNGEIIDL 197


>gi|325650658|emb|CBY89512.1| RecA protein [Rhizobium leguminosarum]
          Length = 183

 Score =  305 bits (782), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 148/183 (80%), Positives = 171/183 (93%), Gaps = 1/183 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 2   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 61  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 121 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 180

Query: 190 ISR 192
           IS+
Sbjct: 181 ISK 183


>gi|18076859|emb|CAC87596.1| recA protein [Pseudomonas marginalis]
          Length = 199

 Score =  305 bits (782), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 141/199 (70%), Positives = 173/199 (86%)

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IAQ+QK G +CAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+
Sbjct: 1   VIAQAQKMGASCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAI 60

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMK
Sbjct: 61  DVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q 
Sbjct: 121 IGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQA 180

Query: 267 EFDIMYGEGISFFGELIDL 285
           EF I+YG+GI   GE+IDL
Sbjct: 181 EFQILYGKGIYLNGEMIDL 199


>gi|325651139|emb|CBY89391.1| RecA protein [Sinorhizobium meliloti]
          Length = 183

 Score =  305 bits (782), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 150/184 (81%), Positives = 169/184 (91%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKL +SIS
Sbjct: 120 QALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLXASIS 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|198385763|gb|ACH86225.1| RecA [Rhizobium sp. T136]
          Length = 181

 Score =  305 bits (782), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 150/180 (83%), Positives = 168/180 (93%), Gaps = 1/180 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  S+ E IE VS+GSLGLDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNESVVE-IETVSTGSLGLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181


>gi|325651215|emb|CBY89429.1| RecA protein [Rhizobium alamii]
          Length = 183

 Score =  305 bits (782), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 151/182 (82%), Positives = 169/182 (92%), Gaps = 1/182 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  SI E IE VS+GSL LDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNESIVE-IETVSTGSLSLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RS 193
           +S
Sbjct: 180 KS 181


>gi|110349888|emb|CAL15006.1| recombinase A [Rhizobium cellulosilyticum]
 gi|110349890|emb|CAL15007.1| recombinase A [Rhizobium cellulosilyticum]
          Length = 183

 Score =  305 bits (781), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 151/182 (82%), Positives = 169/182 (92%), Gaps = 1/182 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  SI E IE VS+GSL LDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNDSIVE-IETVSTGSLSLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RS 193
           +S
Sbjct: 180 KS 181


>gi|223366145|gb|ACM88608.1| RecA [Rhizobium sp. CVIII14]
          Length = 186

 Score =  305 bits (781), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 149/186 (80%), Positives = 171/186 (91%), Gaps = 1/186 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P
Sbjct: 2   EXKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLP 60

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 61  RGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 120

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 121 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 180

Query: 186 LTSSIS 191
           LT+SIS
Sbjct: 181 LTASIS 186


>gi|325650910|emb|CBY89638.1| RecA protein [Rhizobium sp. R-45860=2192]
 gi|325650914|emb|CBY89640.1| RecA protein [Rhizobium sp. R-46039=B1004]
          Length = 183

 Score =  305 bits (781), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 152/182 (83%), Positives = 169/182 (92%), Gaps = 1/182 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG+  SI E IE VS+GSL LDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGANESIVE-IETVSTGSLSLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RS 193
           +S
Sbjct: 180 KS 181


>gi|198385739|gb|ACH86213.1| RecA [Phyllobacterium sp. T1018]
          Length = 186

 Score =  305 bits (781), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 148/184 (80%), Positives = 169/184 (91%), Gaps = 1/184 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE V +GSL LDIALG+GG PKGRI
Sbjct: 3   VDKTKALDAALSQIERAFGKGSIMRLGRNEQVVE-IETVPTGSLSLDIALGVGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRS 193
           ISRS
Sbjct: 182 ISRS 185


>gi|225008774|gb|ACN78935.1| RecA [Rhizobium sp. HETP05]
          Length = 188

 Score =  305 bits (780), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 149/182 (81%), Positives = 170/182 (93%), Gaps = 1/182 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 8   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 66

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 67  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 126

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 127 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 186

Query: 190 IS 191
           IS
Sbjct: 187 IS 188


>gi|311692219|dbj|BAJ25724.1| recombinase A [Rhizobium sp. I132]
 gi|311692221|dbj|BAJ25725.1| recombinase A [Rhizobium sp. I213]
 gi|311692223|dbj|BAJ25726.1| recombinase A [Rhizobium sp. I231]
 gi|311692225|dbj|BAJ25727.1| recombinase A [Rhizobium sp. I312]
 gi|311692229|dbj|BAJ25729.1| recombinase A [Rhizobium sp. I314]
 gi|311692235|dbj|BAJ25732.1| recombinase A [Rhizobium sp. O123]
 gi|311692237|dbj|BAJ25733.1| recombinase A [Rhizobium sp. O312]
 gi|311692241|dbj|BAJ25735.1| recombinase A [Rhizobium sp. T134]
          Length = 186

 Score =  305 bits (780), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 147/187 (78%), Positives = 173/187 (92%), Gaps = 1/187 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKCILV 198
           +S  +++
Sbjct: 180 KSNTMVI 186


>gi|112791544|gb|ABI22042.1| recombinase A [Pantoea ananatis]
          Length = 196

 Score =  305 bits (780), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 140/196 (71%), Positives = 172/196 (87%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQRKGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FI
Sbjct: 61  ARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D++ G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSETRVKVVKNKIA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF IMYGEGI
Sbjct: 181 APFKQAEFQIMYGEGI 196


>gi|298714206|emb|CBJ27342.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 329

 Score =  305 bits (780), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 142/247 (57%), Positives = 193/247 (78%), Gaps = 2/247 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           +  K  AL  AL Q++  YGKGA+MQLGS  +    +EV+ +GSL LD ALG+GG P+GR
Sbjct: 54  VPKKQLALSMALKQVEMAYGKGAVMQLGS--AEVAKVEVIPTGSLSLDHALGVGGLPRGR 111

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VE+YGPESSGKTT+ALH +A+ QK GGT  F+DAEHALDS YA+ +GVD+  L ++QPD
Sbjct: 112 VVEVYGPESSGKTTVALHAVAKCQKAGGTAVFIDAEHALDSAYAKAIGVDMTKLYLAQPD 171

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GEQAL+I D LV+S AVD++V+DSVAAL P+AE+EG+MG+    +QARLMSQALRKLT+
Sbjct: 172 NGEQALDIVDTLVKSAAVDMVVVDSVAALVPKAELEGEMGDHHIALQARLMSQALRKLTA 231

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            ++ ++C L+FINQ+R K+GV+FGSP+ T+GG AL+FYSSVRL++R+  +IK    + G 
Sbjct: 232 ILNTTRCTLIFINQIRQKVGVVFGSPDVTSGGMALRFYSSVRLEVRKGQAIKQNGEMVGT 291

Query: 249 QTRVKVV 255
           +  V+V+
Sbjct: 292 KRGVRVL 298


>gi|262064664|gb|ACY07566.1| recombinase A [Rhizobium sp. LCS0401]
          Length = 190

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 148/184 (80%), Positives = 171/184 (92%), Gaps = 1/184 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 7   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 65

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 66  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 125

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKL +S
Sbjct: 126 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLXAS 185

Query: 190 ISRS 193
           IS+S
Sbjct: 186 ISKS 189


>gi|18076873|emb|CAC87603.1| recA protein [Pseudomonas syringae]
          Length = 199

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 140/199 (70%), Positives = 172/199 (86%)

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+
Sbjct: 1   VIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAI 60

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVA L P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMK
Sbjct: 61  DVIVVDSVAVLVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q 
Sbjct: 121 IGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQA 180

Query: 267 EFDIMYGEGISFFGELIDL 285
           EF I+YG+GI   GE++DL
Sbjct: 181 EFQILYGKGIYLNGEIVDL 199


>gi|18076869|emb|CAC87601.1| recA protein [Pseudomonas resinovorans]
          Length = 199

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 141/199 (70%), Positives = 174/199 (87%)

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AV
Sbjct: 1   VIAEAQKMGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAV 60

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+I++DSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T +I  + C+++FINQ+RMK
Sbjct: 61  DVIIVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G++K+ + + G++TRVKVVKNK+A PF+Q 
Sbjct: 121 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGEEVVGSETRVKVVKNKVAPPFRQA 180

Query: 267 EFDIMYGEGISFFGELIDL 285
           EF IMYG+GI   GE+IDL
Sbjct: 181 EFQIMYGKGIYRTGEIIDL 199


>gi|18076871|emb|CAC87602.1| recA protein [Pseudomonas stutzeri]
          Length = 199

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 141/199 (70%), Positives = 174/199 (87%)

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AV
Sbjct: 1   VIAEAQKMGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAV 60

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+I++DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T +I  + C+++FINQ+RMK
Sbjct: 61  DVIIVDSVAALVPKAEIEGEMGDTHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q 
Sbjct: 121 IGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQA 180

Query: 267 EFDIMYGEGISFFGELIDL 285
           EF I+YG+GI   GE+IDL
Sbjct: 181 EFQILYGKGIYRNGEVIDL 199


>gi|118405783|gb|ABK81257.1| recombinase A [Azomonas macrocytogenes]
 gi|118405799|gb|ABK81265.1| recombinase A [Azomonas macrocytogenes]
          Length = 196

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 140/196 (71%), Positives = 173/196 (88%)

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+
Sbjct: 1   AEAQKQGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDV 60

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T +I  + C+++FINQ+RMKIG
Sbjct: 61  IIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIG 120

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFGSPETTTGGNALKFY+SVRLDIRR+G++KD D + G++TRVKVVKNK+A PF+Q EF
Sbjct: 121 VMFGSPETTTGGNALKFYASVRLDIRRIGAVKDSDEVIGSETRVKVVKNKVAPPFRQAEF 180

Query: 269 DIMYGEGISFFGELID 284
            I+YG+GI   GE+ID
Sbjct: 181 QILYGKGIYRNGEVID 196


>gi|25808141|gb|AAN74135.1| RecA [Helicobacter pylori]
          Length = 212

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 141/210 (67%), Positives = 177/210 (84%), Gaps = 1/210 (0%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+D
Sbjct: 2   EKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFID 61

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AE
Sbjct: 62  AEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAE 121

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGN 221
           I+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGN
Sbjct: 122 IDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGN 181

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ALKFY+SVR+DIRR+ S+K  +   GN+ +
Sbjct: 182 ALKFYASVRIDIRRIASLKQNEQHIGNRAK 211


>gi|225350251|gb|ACN88010.1| RecA [Vibrio sp. SG167]
          Length = 201

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 138/201 (68%), Positives = 173/201 (86%)

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           G E SGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQA
Sbjct: 1   GSEFSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQA 60

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S
Sbjct: 61  LEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQS 120

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+K
Sbjct: 121 NCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIK 180

Query: 254 VVKNKMASPFKQVEFDIMYGE 274
           VVKNK+A+PFK+    IMYG+
Sbjct: 181 VVKNKIAAPFKEANTQIMYGQ 201


>gi|6694844|gb|AAF25429.1|AF214782_1 RecA protein [Arthrobacter ureafaciens]
          Length = 207

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 144/207 (69%), Positives = 173/207 (83%)

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD   LL+SQ
Sbjct: 1   GRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPDYAAKLGVDTDALLVSQ 60

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI DMLV SG++DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 61  PDTGEQALEIMDMLVGSGSLDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 120

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+     
Sbjct: 121 TGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIQTLKEGADSV 180

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYG 273
           GN+T+ K+VKNKMA PFK  EFDI+YG
Sbjct: 181 GNRTKAKIVKNKMAPPFKIAEFDIIYG 207


>gi|213012400|gb|ACJ38766.1| recombination-repair protein [Vibrio sinaloensis]
          Length = 196

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 140/196 (71%), Positives = 171/196 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMY 272
           NK+A+PFK+ E  I+Y
Sbjct: 181 NKIAAPFKEAETQILY 196


>gi|262064650|gb|ACY07559.1| recombinase A [Rhizobium leguminosarum]
          Length = 185

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 148/182 (81%), Positives = 170/182 (93%), Gaps = 1/182 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 5   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 64  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 124 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 183

Query: 190 IS 191
           IS
Sbjct: 184 IS 185


>gi|25005288|emb|CAD44252.1| RecA protein [Ensifer adhaerens]
 gi|25005290|emb|CAD44253.1| RecA protein [Ensifer adhaerens]
 gi|25005292|emb|CAD44254.1| RecA protein [Ensifer adhaerens]
          Length = 183

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 148/184 (80%), Positives = 169/184 (91%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG++LPGMQARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDNLPGMQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|112791546|gb|ABI22043.1| recombinase A [Pantoea agglomerans]
          Length = 196

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 139/196 (70%), Positives = 172/196 (87%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIASAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FI
Sbjct: 61  ARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D++ G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSETRVKVVKNKIA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF IMYGEGI
Sbjct: 181 APFKQAEFQIMYGEGI 196


>gi|307343145|emb|CBJ18102.1| recombinase A [Micromonospora citrea]
          Length = 206

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 143/206 (69%), Positives = 172/206 (83%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDALLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVK 253
           SVRLD+RR+ S+KD   + GN+T  K
Sbjct: 181 SVRLDVRRIESLKDGTDVVGNRTHSK 206


>gi|112791520|gb|ABI22030.1| recombinase A [Samsonia erythrinae]
          Length = 196

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 140/196 (71%), Positives = 170/196 (86%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FI
Sbjct: 61  TRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIKD + + GN+TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGEEVVGNETRVKVVKNKVA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF I+YGEGI
Sbjct: 181 APFKQAEFQILYGEGI 196


>gi|47109408|emb|CAG28700.1| recA [Propionibacterium acidipropionici]
          Length = 215

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 146/217 (67%), Positives = 178/217 (82%), Gaps = 2/217 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           +M+LG + ++   I  + +GS+ LD+ALG+GG P+GRIVEIYGPES GKTTLALH IA +
Sbjct: 1   VMRLGDRETV--KIPAIPTGSVALDVALGVGGLPRGRIVEIYGPESGGKTTLALHAIANA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           Q  GG CAF+DAEHALD  YA+ LGVD  NLLISQPD GEQALEI D LVRSGA+++IVI
Sbjct: 59  QAEGGICAFIDAEHALDPEYAKNLGVDTDNLLISQPDNGEQALEIADTLVRSGALELIVI 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAALTP+AEIEGDMG+S  G+QARLMSQALRK+T ++S +    +FINQ+R KIGVMF
Sbjct: 119 DSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKMTGALSGAGTTAIFINQLREKIGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           G+PETTTGG ALKFYSSVRLD+RR+ ++KD D + G 
Sbjct: 179 GNPETTTGGRALKFYSSVRLDVRRIQTLKDGDEMVGT 215


>gi|25808119|gb|AAN74124.1| RecA [Helicobacter pylori]
          Length = 212

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 141/210 (67%), Positives = 177/210 (84%), Gaps = 1/210 (0%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+D
Sbjct: 2   EKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFID 61

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AE
Sbjct: 62  AEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAE 121

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGN 221
           I+GDMG+   G+QARLMS ALRK+T  + +    LVFINQ+RMKIG+M +GSPETTTGGN
Sbjct: 122 IDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMMGYGSPETTTGGN 181

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ALKFY+SVR+DIRR+ ++K  +   GN+ +
Sbjct: 182 ALKFYASVRIDIRRIAALKQNEQHIGNRAK 211


>gi|325650898|emb|CBY89632.1| RecA protein [Rhizobium sp. R-45724=1436]
 gi|325650906|emb|CBY89636.1| RecA protein [Rhizobium sp. R-45829=2041]
          Length = 183

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 151/182 (82%), Positives = 169/182 (92%), Gaps = 1/182 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  +I E IE VS+GSL LDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RS 193
           +S
Sbjct: 180 KS 181


>gi|282952562|emb|CBI75458.1| DNA repair protein RecA [Pseudomonas lini]
 gi|282952566|emb|CBI75460.1| DNA repair protein RecA [Pseudomonas migulae]
          Length = 200

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 142/199 (71%), Positives = 173/199 (86%)

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
           TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DSVAA
Sbjct: 2   TCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAA 61

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPET 216
           L P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFGSPET
Sbjct: 62  LVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPET 121

Query: 217 TTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276
           TTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+ASPF+Q EF I+YG+GI
Sbjct: 122 TTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVASPFRQAEFQILYGKGI 181

Query: 277 SFFGELIDLGVKASIVDKS 295
              GE+IDLGV    V+KS
Sbjct: 182 YLNGEMIDLGVLHGFVEKS 200


>gi|291246094|gb|ADD85175.1| RecA [Borrelia recurrentis]
          Length = 242

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 145/241 (60%), Positives = 200/241 (82%), Gaps = 3/241 (1%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+++++G +  + + +E + SG + LD A+GIGG+P+GR+VEI+GPESSGKT
Sbjct: 3   QIEKDFGKGSLIKMG-ESPVGKYLESIPSGFILLDEAIGIGGYPRGRVVEIFGPESSGKT 61

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QKTGG  AF+DAEHALD +YAR LGV++  L +SQPDTGEQAL+I + L+
Sbjct: 62  TLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQPDTGEQALDIAEYLI 121

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG VD+IV+DSVAAL P+AEI+G+MG++  G+QARLMS+ALRK+T+ +S+S   ++FIN
Sbjct: 122 RSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGLQARLMSKALRKITAILSKSNACIMFIN 181

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI--KDKDSITGNQTRVKVVKNKM 259
           Q+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V  +     D++ GN+ RVKVVKNK+
Sbjct: 182 QIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKVEQVIGSSSDNVIGNKIRVKVVKNKV 241

Query: 260 A 260
           A
Sbjct: 242 A 242


>gi|112791496|gb|ABI22018.1| recombinase A [Citrobacter freundii]
 gi|112791502|gb|ABI22021.1| recombinase A [Klebsiella pneumoniae]
 gi|112791506|gb|ABI22023.1| recombinase A [Salmonella sp. ICMP 15669]
          Length = 196

 Score =  304 bits (778), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 139/196 (70%), Positives = 172/196 (87%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FI
Sbjct: 61  ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSETRVKVVKNKIA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF I+YGEGI
Sbjct: 181 APFKQAEFQILYGEGI 196


>gi|25808129|gb|AAN74129.1| RecA [Helicobacter pylori]
          Length = 209

 Score =  304 bits (778), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 141/208 (67%), Positives = 176/208 (84%), Gaps = 1/208 (0%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAE
Sbjct: 1   IDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+
Sbjct: 61  HALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNAL 223
           GDMG+   G+QARLMS ALRK+T  + +    LVFINQ+RMKIG+M +GSPETTTGGNAL
Sbjct: 121 GDMGDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMMGYGSPETTTGGNAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           KFY+SVR+DIRR+ S+K  +   GN+ +
Sbjct: 181 KFYASVRIDIRRIASLKQNEQHIGNRAK 208


>gi|307343149|emb|CBJ18104.1| recombinase A [Micromonospora coriariae]
          Length = 206

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 141/206 (68%), Positives = 172/206 (83%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVASAQRAGGIAAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPDYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVK 253
           SVRLD+RR+ S+KD   + GN+T  K
Sbjct: 181 SVRLDVRRIESLKDGTDVVGNRTHSK 206


>gi|325651083|emb|CBY89363.1| RecA protein [Sinorhizobium medicae]
          Length = 182

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 149/183 (81%), Positives = 168/183 (91%), Gaps = 1/183 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKALEAALSQI+  +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVEI
Sbjct: 1   SKALEAALSQIEXAFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+
Sbjct: 120 ALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISK 179

Query: 193 SKC 195
           S C
Sbjct: 180 SNC 182


>gi|325651143|emb|CBY89393.1| RecA protein [Sinorhizobium meliloti]
          Length = 181

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 149/182 (81%), Positives = 168/182 (92%), Gaps = 1/182 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIY
Sbjct: 1   KALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQA
Sbjct: 60  GPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S
Sbjct: 120 LEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 179

Query: 194 KC 195
            C
Sbjct: 180 NC 181


>gi|89143249|emb|CAJ57519.1| recombinase A [Microbacterium imperiale]
          Length = 212

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 146/212 (68%), Positives = 173/212 (81%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DML+RSG
Sbjct: 1   LHAIANAQRAGGIAAFIDAEHALDPSYAQKLGVDIDALLVSQPDTGEQALEIADMLIRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A+D++VIDSVAAL P AEI+G+MG+S  G+QARLMSQALRKLT  ++++K   +FINQ+R
Sbjct: 61  AIDLVVIDSVAALVPEAEIKGEMGDSHVGLQARLMSQALRKLTGGLNQTKTTAIFINQLR 120

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
            KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA PFK
Sbjct: 121 EKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKMAPPFK 180

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
           Q EFDI+YG GIS  G LID GV+  IV KSG
Sbjct: 181 QAEFDILYGVGISREGSLIDFGVEHGIVKKSG 212


>gi|325650572|emb|CBY89469.1| RecA protein [Rhizobium leguminosarum]
 gi|325650584|emb|CBY89475.1| RecA protein [Rhizobium leguminosarum]
 gi|325650592|emb|CBY89479.1| RecA protein [Rhizobium leguminosarum]
 gi|325650594|emb|CBY89480.1| RecA protein [Rhizobium leguminosarum]
 gi|325650602|emb|CBY89484.1| RecA protein [Rhizobium leguminosarum]
 gi|325650608|emb|CBY89487.1| RecA protein [Rhizobium leguminosarum]
 gi|325650728|emb|CBY89547.1| RecA protein [Rhizobium leguminosarum]
 gi|325650800|emb|CBY89583.1| RecA protein [Rhizobium leguminosarum]
 gi|325650816|emb|CBY89591.1| RecA protein [Rhizobium leguminosarum]
 gi|325650822|emb|CBY89594.1| RecA protein [Rhizobium leguminosarum]
 gi|325650828|emb|CBY89597.1| RecA protein [Rhizobium leguminosarum]
 gi|325650830|emb|CBY89598.1| RecA protein [Rhizobium leguminosarum]
 gi|325650838|emb|CBY89602.1| RecA protein [Rhizobium leguminosarum]
 gi|325650842|emb|CBY89604.1| RecA protein [Rhizobium leguminosarum]
 gi|325650846|emb|CBY89606.1| RecA protein [Rhizobium leguminosarum]
 gi|325650848|emb|CBY89607.1| RecA protein [Rhizobium leguminosarum]
 gi|325650862|emb|CBY89614.1| RecA protein [Rhizobium leguminosarum]
 gi|325650864|emb|CBY89615.1| RecA protein [Rhizobium leguminosarum]
 gi|325650876|emb|CBY89621.1| RecA protein [Rhizobium leguminosarum]
 gi|325650880|emb|CBY89623.1| RecA protein [Rhizobium leguminosarum]
 gi|325650888|emb|CBY89627.1| RecA protein [Rhizobium leguminosarum]
 gi|325651249|emb|CBY89446.1| RecA protein [Rhizobium leguminosarum]
 gi|325651269|emb|CBY89456.1| RecA protein [Rhizobium leguminosarum]
 gi|325651273|emb|CBY89458.1| RecA protein [Rhizobium leguminosarum]
 gi|325651275|emb|CBY89459.1| RecA protein [Rhizobium leguminosarum]
          Length = 183

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 148/182 (81%), Positives = 170/182 (93%), Gaps = 1/182 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RS 193
           +S
Sbjct: 180 KS 181


>gi|25808175|gb|AAN74152.1| RecA [Helicobacter pylori]
 gi|25808191|gb|AAN74160.1| RecA [Helicobacter pylori]
          Length = 212

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 141/210 (67%), Positives = 177/210 (84%), Gaps = 1/210 (0%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+D
Sbjct: 2   EKIDSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFID 61

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AE
Sbjct: 62  AEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAE 121

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGN 221
           I+GDMG+   G+QARLMS ALRK+T  + +    LVFINQ+RMKIG+M +GSPETTTGGN
Sbjct: 122 IDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMMGYGSPETTTGGN 181

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ALKFY+SVR+DIRR+ ++K  +   GN+ +
Sbjct: 182 ALKFYASVRIDIRRIAALKQNEQHIGNRAK 211


>gi|25808097|gb|AAN74113.1| RecA [Helicobacter pylori]
 gi|25808109|gb|AAN74119.1| RecA [Helicobacter pylori]
          Length = 212

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 140/210 (66%), Positives = 177/210 (84%), Gaps = 1/210 (0%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+D
Sbjct: 2   EKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFID 61

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AE
Sbjct: 62  AEHALDVHYAKRLGVDTQNLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAE 121

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGN 221
           I+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGN
Sbjct: 122 IDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGN 181

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ALKFY+SVR+DIRR+ ++K  +   GN+ +
Sbjct: 182 ALKFYASVRIDIRRIAALKQNEQHIGNRAK 211


>gi|325651217|emb|CBY89430.1| RecA protein [Rhizobium cellulosilyticum]
          Length = 183

 Score =  303 bits (777), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 150/182 (82%), Positives = 169/182 (92%), Gaps = 1/182 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  +I E IE VS+GSL LDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RS 193
           +S
Sbjct: 180 KS 181


>gi|325650908|emb|CBY89637.1| RecA protein [Rhizobium sp. R-45835=2079T1]
 gi|325650924|emb|CBY89645.1| RecA protein [Rhizobium sp. R-46165=t228]
 gi|325650930|emb|CBY89648.1| RecA protein [Rhizobium sp. R-46235=t497]
          Length = 183

 Score =  303 bits (777), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 150/182 (82%), Positives = 169/182 (92%), Gaps = 1/182 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RS 193
           +S
Sbjct: 180 KS 181


>gi|115498195|gb|ABI98677.1| RecA [Rhizobium sp. CCBAU 65255]
          Length = 183

 Score =  303 bits (777), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 144/184 (78%), Positives = 170/184 (92%), Gaps = 1/184 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LGS  ++ E IE +S+GSLGLD ALG+GG PKGRI+EIYGPESSGKTTLAL 
Sbjct: 1   FGKGSVMELGSNENVIE-IETISTGSLGLDTALGVGGLPKGRIIEIYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAV
Sbjct: 60  TIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMK
Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMK 179

Query: 207 IGVM 210
           IGVM
Sbjct: 180 IGVM 183


>gi|112791538|gb|ABI22039.1| recombinase A [Erwinia mallotivora]
 gi|112791540|gb|ABI22040.1| recombinase A [Erwinia psidii]
 gi|112791542|gb|ABI22041.1| recombinase A [Erwinia tracheiphila]
          Length = 196

 Score =  303 bits (777), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 139/196 (70%), Positives = 171/196 (87%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FI
Sbjct: 61  ARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSETRVKVVKNKVA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF IMYGEGI
Sbjct: 181 APFKQAEFQIMYGEGI 196


>gi|32345038|gb|AAM93529.1| RecA protein [Rickettsia aeschlimannii]
          Length = 184

 Score =  303 bits (777), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 142/184 (77%), Positives = 166/184 (90%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALGIGG PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  Y
Sbjct: 1   SLGLDIALGIGGVPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+KLGV++  L+ISQPDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++ 
Sbjct: 61  AKKLGVNIDELIISQPDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQ 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
              QARLMSQALRKLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+
Sbjct: 121 MASQARLMSQALRKLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRI 180

Query: 232 DIRR 235
           DIRR
Sbjct: 181 DIRR 184


>gi|290795157|gb|ADD64593.1| RecA recombinase [Vibrio splendidus]
          Length = 204

 Score =  303 bits (777), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 144/206 (69%), Positives = 177/206 (85%), Gaps = 2/206 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   ++ +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  I
Sbjct: 1   KGSIMRLGDNRTM--DVKTISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           + +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D+
Sbjct: 59  SAAQKVGKTCAFIDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG
Sbjct: 119 LVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIR 234
           VMFG+PETTTGGNALKFY+SVRLDIR
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIR 204


>gi|307343414|emb|CBJ18148.1| recombinase A [Micromonospora sp. CR38]
          Length = 213

 Score =  303 bits (777), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 141/204 (69%), Positives = 173/204 (84%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           ++ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH++A +Q+ GG  AF+DAEHA
Sbjct: 8   IIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHSVASAQRLGGIAAFIDAEHA 67

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YA+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+
Sbjct: 68  LDPEYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGE 127

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+S  G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY
Sbjct: 128 MGDSHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFY 187

Query: 227 SSVRLDIRRVGSIKDKDSITGNQT 250
           +SVRLD+RR+ S+KD   + GN+T
Sbjct: 188 ASVRLDVRRIESLKDGTDVVGNRT 211


>gi|298103530|emb|CBH19576.1| recombinase A [Mesorhizobium sp. CMSS27]
          Length = 187

 Score =  303 bits (777), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 145/188 (77%), Positives = 171/188 (90%), Gaps = 1/188 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           +AALSQI+R +GKG+IM+LG+   I E IE V +GSLGLDIALG+GG P+GRI+EIYGPE
Sbjct: 1   DAALSQIERAFGKGSIMRLGANEKIVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS  +
Sbjct: 120 CDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTM 179

Query: 197 LVFINQMR 204
           ++FI Q+R
Sbjct: 180 VIFITQIR 187


>gi|25808121|gb|AAN74125.1| RecA [Helicobacter pylori]
 gi|25808139|gb|AAN74134.1| RecA [Helicobacter pylori]
 gi|25808143|gb|AAN74136.1| RecA [Helicobacter pylori]
 gi|25808153|gb|AAN74141.1| RecA [Helicobacter pylori]
          Length = 212

 Score =  303 bits (777), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 140/210 (66%), Positives = 177/210 (84%), Gaps = 1/210 (0%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+D
Sbjct: 2   EKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFID 61

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AE
Sbjct: 62  AEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAE 121

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGN 221
           I+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGN
Sbjct: 122 IDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGN 181

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ALKFY+SVR+DIRR+ ++K  +   GN+ +
Sbjct: 182 ALKFYASVRIDIRRIAALKQNEQHIGNRAK 211


>gi|145327737|ref|NP_001077844.1| DNA repair protein recA [Arabidopsis thaliana]
 gi|332198077|gb|AEE36198.1| DNA repair protein recA-like 1 [Arabidopsis thaliana]
          Length = 343

 Score =  303 bits (777), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 151/261 (57%), Positives = 196/261 (75%), Gaps = 5/261 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
            +D+ KALEAA++ I   +GKG++ +LGS G     +E  SSG L LD+ALG GG PKGR
Sbjct: 80  FLDRQKALEAAMNDINSSFGKGSVTRLGSAGGAL--VETFSSGILTLDLALG-GGLPKGR 136

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTLALH IA+ QK GG    VDAEHA D  Y++ LGVD++NL++ QPD
Sbjct: 137 VVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPD 196

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GE ALE  D + RSGAVD+I +DSV+ALTPRAEIEG++G    G+QARLMSQALRK++ 
Sbjct: 197 NGEMALETADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSG 256

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--DSIT 246
           + S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++SVRL+IR  G IK    D   
Sbjct: 257 NASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSAGKIKSSKGDEDI 316

Query: 247 GNQTRVKVVKNKMASPFKQVE 267
           G + RV+V K+K++ P+KQ E
Sbjct: 317 GLRARVRVQKSKVSRPYKQEE 337


>gi|298103532|emb|CBH19577.1| recombinase A [Mesorhizobium sp. CMSS1]
          Length = 188

 Score =  303 bits (777), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 145/188 (77%), Positives = 171/188 (90%), Gaps = 1/188 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           +AALSQI+R +GKG+IM+LG+   I E IE V +GSLGLDIALG+GG P+GRI+EIYGPE
Sbjct: 2   DAALSQIERAFGKGSIMRLGANEKIVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPE 60

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI
Sbjct: 61  SSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 120

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS  +
Sbjct: 121 CDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTM 180

Query: 197 LVFINQMR 204
           ++FI Q+R
Sbjct: 181 VIFITQIR 188


>gi|112791494|gb|ABI22017.1| recombinase A [Enterobacter cancerogenus]
          Length = 196

 Score =  303 bits (776), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 138/196 (70%), Positives = 172/196 (87%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  +A +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVVAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FI
Sbjct: 61  ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD +++ G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGENVVGSETRVKVVKNKIA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF I+YGEGI
Sbjct: 181 APFKQAEFQILYGEGI 196


>gi|118405793|gb|ABK81262.1| recombinase A [Azotobacter chroococcum]
 gi|118405795|gb|ABK81263.1| recombinase A [Azotobacter chroococcum]
          Length = 197

 Score =  303 bits (776), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 139/197 (70%), Positives = 173/197 (87%)

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+
Sbjct: 1   AEAQKQGATCAFVDAEHALDPDYAAKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDV 60

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T +I  + C+++FINQ+RMKIG
Sbjct: 61  IIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIG 120

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF
Sbjct: 121 VMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEF 180

Query: 269 DIMYGEGISFFGELIDL 285
            I+YG+GI   GE+IDL
Sbjct: 181 QILYGKGIYRNGEIIDL 197


>gi|262272841|gb|ACY40640.1| RecA [Leptotrichia buccalis]
          Length = 238

 Score =  303 bits (776), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 155/237 (65%), Positives = 197/237 (83%), Gaps = 3/237 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALGIGG P+GRIVEIYG ESSGKTTLALH IA++QK GG  AF+DAEHAL
Sbjct: 2   ISTGSLNLDIALGIGGVPRGRIVEIYGAESSGKTTLALHIIAEAQKAGGVVAFIDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+ LGV++  LLISQPDTGEQALEI+DMLVRSGA+D+IV+DSVAAL P+AEIEG+M
Sbjct: 62  DPVYAKALGVNIDELLISQPDTGEQALEISDMLVRSGAIDVIVVDSVAALVPKAEIEGEM 121

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG---VMFGSPETTTGGNALK 224
           G+   G+QARLMS+ALRKLT +I++S  +++FINQ+R KIG    + G   TT+GG ALK
Sbjct: 122 GDQQMGLQARLMSKALRKLTGNIAKSDTVMIFINQIREKIGGFSFVPGVQTTTSGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE 281
           F+S+VR++++RVGS+K  D + G++  VKV KNK+A PFK+ +F+IMYG GIS  GE
Sbjct: 182 FFSTVRMEVKRVGSVKQGDDVVGSEVVVKVTKNKVAPPFKEAKFNIMYGTGISKIGE 238


>gi|270485025|gb|ACZ82280.1| RecA protein [Vibrio coralliilyticus]
 gi|270485027|gb|ACZ82281.1| RecA protein [Vibrio coralliilyticus]
 gi|270485029|gb|ACZ82282.1| RecA protein [Vibrio coralliilyticus]
 gi|270485031|gb|ACZ82283.1| RecA protein [Vibrio coralliilyticus]
 gi|270485033|gb|ACZ82284.1| RecA protein [Vibrio coralliilyticus P1]
 gi|270485035|gb|ACZ82285.1| RecA protein [Vibrio coralliilyticus]
 gi|270485037|gb|ACZ82286.1| RecA protein [Vibrio coralliilyticus]
 gi|270485039|gb|ACZ82287.1| RecA protein [Vibrio coralliilyticus]
 gi|270485041|gb|ACZ82288.1| RecA protein [Vibrio coralliilyticus]
 gi|270485043|gb|ACZ82289.1| RecA protein [Vibrio coralliilyticus]
 gi|270485045|gb|ACZ82290.1| RecA protein [Vibrio coralliilyticus]
 gi|270485047|gb|ACZ82291.1| RecA protein [Vibrio coralliilyticus]
 gi|270485049|gb|ACZ82292.1| RecA protein [Vibrio coralliilyticus]
          Length = 191

 Score =  303 bits (776), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 138/191 (72%), Positives = 169/191 (88%)

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQP
Sbjct: 1   RIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQP 60

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT
Sbjct: 61  DTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLT 120

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + G
Sbjct: 121 GNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVG 180

Query: 248 NQTRVKVVKNK 258
           N+TR+KVVKNK
Sbjct: 181 NETRIKVVKNK 191


>gi|112791498|gb|ABI22019.1| recombinase A [Escherichia coli DSM 30083]
 gi|112791500|gb|ABI22020.1| recombinase A [Shigella dysenteriae]
          Length = 196

 Score =  303 bits (776), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 139/196 (70%), Positives = 172/196 (87%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FI
Sbjct: 61  ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF I+YGEGI
Sbjct: 181 APFKQAEFQILYGEGI 196


>gi|325650568|emb|CBY89467.1| RecA protein [Rhizobium leguminosarum]
 gi|325650570|emb|CBY89468.1| RecA protein [Rhizobium leguminosarum]
 gi|325650574|emb|CBY89470.1| RecA protein [Rhizobium leguminosarum]
 gi|325650576|emb|CBY89471.1| RecA protein [Rhizobium leguminosarum]
 gi|325650578|emb|CBY89472.1| RecA protein [Rhizobium leguminosarum]
 gi|325650580|emb|CBY89473.1| RecA protein [Rhizobium leguminosarum]
 gi|325650582|emb|CBY89474.1| RecA protein [Rhizobium leguminosarum]
 gi|325650586|emb|CBY89476.1| RecA protein [Rhizobium leguminosarum]
 gi|325650588|emb|CBY89477.1| RecA protein [Rhizobium leguminosarum]
 gi|325650590|emb|CBY89478.1| RecA protein [Rhizobium leguminosarum]
 gi|325650596|emb|CBY89481.1| RecA protein [Rhizobium leguminosarum]
 gi|325650598|emb|CBY89482.1| RecA protein [Rhizobium leguminosarum]
 gi|325650600|emb|CBY89483.1| RecA protein [Rhizobium leguminosarum]
 gi|325650604|emb|CBY89485.1| RecA protein [Rhizobium leguminosarum]
 gi|325650606|emb|CBY89486.1| RecA protein [Rhizobium leguminosarum]
 gi|325650610|emb|CBY89488.1| RecA protein [Rhizobium leguminosarum]
 gi|325650612|emb|CBY89489.1| RecA protein [Rhizobium leguminosarum]
 gi|325650614|emb|CBY89490.1| RecA protein [Rhizobium leguminosarum]
 gi|325650616|emb|CBY89491.1| RecA protein [Rhizobium leguminosarum]
 gi|325650618|emb|CBY89492.1| RecA protein [Rhizobium leguminosarum]
 gi|325650620|emb|CBY89493.1| RecA protein [Rhizobium leguminosarum]
 gi|325650624|emb|CBY89495.1| RecA protein [Rhizobium leguminosarum]
 gi|325650626|emb|CBY89496.1| RecA protein [Rhizobium leguminosarum]
 gi|325650628|emb|CBY89497.1| RecA protein [Rhizobium leguminosarum]
 gi|325650630|emb|CBY89498.1| RecA protein [Rhizobium leguminosarum]
 gi|325650632|emb|CBY89499.1| RecA protein [Rhizobium leguminosarum]
 gi|325650636|emb|CBY89501.1| RecA protein [Rhizobium leguminosarum]
 gi|325650638|emb|CBY89502.1| RecA protein [Rhizobium leguminosarum]
 gi|325650640|emb|CBY89503.1| RecA protein [Rhizobium leguminosarum]
 gi|325650642|emb|CBY89504.1| RecA protein [Rhizobium leguminosarum]
 gi|325650644|emb|CBY89505.1| RecA protein [Rhizobium leguminosarum]
 gi|325650646|emb|CBY89506.1| RecA protein [Rhizobium leguminosarum]
 gi|325650648|emb|CBY89507.1| RecA protein [Rhizobium leguminosarum]
 gi|325650650|emb|CBY89508.1| RecA protein [Rhizobium leguminosarum]
 gi|325650652|emb|CBY89509.1| RecA protein [Rhizobium leguminosarum]
 gi|325650654|emb|CBY89510.1| RecA protein [Rhizobium leguminosarum]
 gi|325650656|emb|CBY89511.1| RecA protein [Rhizobium leguminosarum]
 gi|325650662|emb|CBY89514.1| RecA protein [Rhizobium leguminosarum]
 gi|325650666|emb|CBY89516.1| RecA protein [Rhizobium leguminosarum]
 gi|325650668|emb|CBY89517.1| RecA protein [Rhizobium leguminosarum]
 gi|325650670|emb|CBY89518.1| RecA protein [Rhizobium leguminosarum]
 gi|325650672|emb|CBY89519.1| RecA protein [Rhizobium leguminosarum]
 gi|325650674|emb|CBY89520.1| RecA protein [Rhizobium leguminosarum]
 gi|325650676|emb|CBY89521.1| RecA protein [Rhizobium leguminosarum]
 gi|325650678|emb|CBY89522.1| RecA protein [Rhizobium leguminosarum]
 gi|325650682|emb|CBY89524.1| RecA protein [Rhizobium leguminosarum]
 gi|325650684|emb|CBY89525.1| RecA protein [Rhizobium leguminosarum]
 gi|325650686|emb|CBY89526.1| RecA protein [Rhizobium leguminosarum]
 gi|325650688|emb|CBY89527.1| RecA protein [Rhizobium leguminosarum]
 gi|325650690|emb|CBY89528.1| RecA protein [Rhizobium leguminosarum]
 gi|325650692|emb|CBY89529.1| RecA protein [Rhizobium leguminosarum]
 gi|325650694|emb|CBY89530.1| RecA protein [Rhizobium leguminosarum]
 gi|325650696|emb|CBY89531.1| RecA protein [Rhizobium leguminosarum]
 gi|325650698|emb|CBY89532.1| RecA protein [Rhizobium leguminosarum]
 gi|325650700|emb|CBY89533.1| RecA protein [Rhizobium leguminosarum]
 gi|325650702|emb|CBY89534.1| RecA protein [Rhizobium leguminosarum]
 gi|325650706|emb|CBY89536.1| RecA protein [Rhizobium leguminosarum]
 gi|325650708|emb|CBY89537.1| RecA protein [Rhizobium leguminosarum]
 gi|325650710|emb|CBY89538.1| RecA protein [Rhizobium leguminosarum]
 gi|325650712|emb|CBY89539.1| RecA protein [Rhizobium leguminosarum]
 gi|325650714|emb|CBY89540.1| RecA protein [Rhizobium leguminosarum]
 gi|325650716|emb|CBY89541.1| RecA protein [Rhizobium leguminosarum]
 gi|325650718|emb|CBY89542.1| RecA protein [Rhizobium leguminosarum]
 gi|325650720|emb|CBY89543.1| RecA protein [Rhizobium leguminosarum]
 gi|325650722|emb|CBY89544.1| RecA protein [Rhizobium leguminosarum]
 gi|325650724|emb|CBY89545.1| RecA protein [Rhizobium leguminosarum]
 gi|325650726|emb|CBY89546.1| RecA protein [Rhizobium leguminosarum]
 gi|325650730|emb|CBY89548.1| RecA protein [Rhizobium leguminosarum]
 gi|325650732|emb|CBY89549.1| RecA protein [Rhizobium leguminosarum]
 gi|325650734|emb|CBY89550.1| RecA protein [Rhizobium leguminosarum]
 gi|325650736|emb|CBY89551.1| RecA protein [Rhizobium leguminosarum]
 gi|325650738|emb|CBY89552.1| RecA protein [Rhizobium leguminosarum]
 gi|325650740|emb|CBY89553.1| RecA protein [Rhizobium leguminosarum]
 gi|325650742|emb|CBY89554.1| RecA protein [Rhizobium leguminosarum]
 gi|325650744|emb|CBY89555.1| RecA protein [Rhizobium leguminosarum]
 gi|325650746|emb|CBY89556.1| RecA protein [Rhizobium leguminosarum]
 gi|325650748|emb|CBY89557.1| RecA protein [Rhizobium leguminosarum]
 gi|325650750|emb|CBY89558.1| RecA protein [Rhizobium leguminosarum]
 gi|325650752|emb|CBY89559.1| RecA protein [Rhizobium leguminosarum]
 gi|325650754|emb|CBY89560.1| RecA protein [Rhizobium leguminosarum]
 gi|325650758|emb|CBY89562.1| RecA protein [Rhizobium leguminosarum]
 gi|325650760|emb|CBY89563.1| RecA protein [Rhizobium leguminosarum]
 gi|325650762|emb|CBY89564.1| RecA protein [Rhizobium leguminosarum]
 gi|325650764|emb|CBY89565.1| RecA protein [Rhizobium leguminosarum]
 gi|325650766|emb|CBY89566.1| RecA protein [Rhizobium leguminosarum]
 gi|325650768|emb|CBY89567.1| RecA protein [Rhizobium leguminosarum]
 gi|325650770|emb|CBY89568.1| RecA protein [Rhizobium leguminosarum]
 gi|325650772|emb|CBY89569.1| RecA protein [Rhizobium leguminosarum]
 gi|325650774|emb|CBY89570.1| RecA protein [Rhizobium leguminosarum]
 gi|325650778|emb|CBY89572.1| RecA protein [Rhizobium leguminosarum]
 gi|325650782|emb|CBY89574.1| RecA protein [Rhizobium leguminosarum]
 gi|325650784|emb|CBY89575.1| RecA protein [Rhizobium leguminosarum]
 gi|325650786|emb|CBY89576.1| RecA protein [Rhizobium leguminosarum]
 gi|325650788|emb|CBY89577.1| RecA protein [Rhizobium leguminosarum]
 gi|325650790|emb|CBY89578.1| RecA protein [Rhizobium leguminosarum]
 gi|325650792|emb|CBY89579.1| RecA protein [Rhizobium leguminosarum]
 gi|325650794|emb|CBY89580.1| RecA protein [Rhizobium leguminosarum]
 gi|325650796|emb|CBY89581.1| RecA protein [Rhizobium leguminosarum]
 gi|325650798|emb|CBY89582.1| RecA protein [Rhizobium leguminosarum]
 gi|325650802|emb|CBY89584.1| RecA protein [Rhizobium leguminosarum]
 gi|325650804|emb|CBY89585.1| RecA protein [Rhizobium leguminosarum]
 gi|325650806|emb|CBY89586.1| RecA protein [Rhizobium leguminosarum]
 gi|325650808|emb|CBY89587.1| RecA protein [Rhizobium leguminosarum]
 gi|325650810|emb|CBY89588.1| RecA protein [Rhizobium leguminosarum]
 gi|325650812|emb|CBY89589.1| RecA protein [Rhizobium leguminosarum]
 gi|325650814|emb|CBY89590.1| RecA protein [Rhizobium leguminosarum]
 gi|325650820|emb|CBY89593.1| RecA protein [Rhizobium leguminosarum]
 gi|325650832|emb|CBY89599.1| RecA protein [Rhizobium leguminosarum]
 gi|325650834|emb|CBY89600.1| RecA protein [Rhizobium leguminosarum]
 gi|325650836|emb|CBY89601.1| RecA protein [Rhizobium leguminosarum]
 gi|325650840|emb|CBY89603.1| RecA protein [Rhizobium leguminosarum]
 gi|325650844|emb|CBY89605.1| RecA protein [Rhizobium leguminosarum]
 gi|325650850|emb|CBY89608.1| RecA protein [Rhizobium leguminosarum]
 gi|325650852|emb|CBY89609.1| RecA protein [Rhizobium leguminosarum]
 gi|325650854|emb|CBY89610.1| RecA protein [Rhizobium leguminosarum]
 gi|325650856|emb|CBY89611.1| RecA protein [Rhizobium leguminosarum]
 gi|325650858|emb|CBY89612.1| RecA protein [Rhizobium leguminosarum]
 gi|325650860|emb|CBY89613.1| RecA protein [Rhizobium leguminosarum]
 gi|325650866|emb|CBY89616.1| RecA protein [Rhizobium leguminosarum]
 gi|325650868|emb|CBY89617.1| RecA protein [Rhizobium leguminosarum]
 gi|325650870|emb|CBY89618.1| RecA protein [Rhizobium leguminosarum]
 gi|325650872|emb|CBY89619.1| RecA protein [Rhizobium leguminosarum]
 gi|325650874|emb|CBY89620.1| RecA protein [Rhizobium leguminosarum]
 gi|325650878|emb|CBY89622.1| RecA protein [Rhizobium leguminosarum]
 gi|325650882|emb|CBY89624.1| RecA protein [Rhizobium leguminosarum]
 gi|325650884|emb|CBY89625.1| RecA protein [Rhizobium leguminosarum]
 gi|325650886|emb|CBY89626.1| RecA protein [Rhizobium leguminosarum]
 gi|325650890|emb|CBY89628.1| RecA protein [Rhizobium leguminosarum]
 gi|325650892|emb|CBY89629.1| RecA protein [Rhizobium leguminosarum]
 gi|325650894|emb|CBY89630.1| RecA protein [Rhizobium leguminosarum]
 gi|325650912|emb|CBY89639.1| RecA protein [Rhizobium sp. R-45889=2430]
 gi|325651221|emb|CBY89432.1| RecA protein [Rhizobium leguminosarum]
 gi|325651223|emb|CBY89433.1| RecA protein [Rhizobium leguminosarum]
 gi|325651225|emb|CBY89434.1| RecA protein [Rhizobium leguminosarum]
 gi|325651227|emb|CBY89435.1| RecA protein [Rhizobium leguminosarum]
 gi|325651231|emb|CBY89437.1| RecA protein [Rhizobium leguminosarum]
 gi|325651233|emb|CBY89438.1| RecA protein [Rhizobium leguminosarum]
 gi|325651235|emb|CBY89439.1| RecA protein [Rhizobium leguminosarum]
 gi|325651237|emb|CBY89440.1| RecA protein [Rhizobium leguminosarum]
 gi|325651239|emb|CBY89441.1| RecA protein [Rhizobium leguminosarum]
 gi|325651241|emb|CBY89442.1| RecA protein [Rhizobium leguminosarum]
 gi|325651243|emb|CBY89443.1| RecA protein [Rhizobium leguminosarum]
 gi|325651245|emb|CBY89444.1| RecA protein [Rhizobium leguminosarum]
 gi|325651247|emb|CBY89445.1| RecA protein [Rhizobium leguminosarum]
 gi|325651251|emb|CBY89447.1| RecA protein [Rhizobium leguminosarum]
 gi|325651253|emb|CBY89448.1| RecA protein [Rhizobium leguminosarum]
 gi|325651255|emb|CBY89449.1| RecA protein [Rhizobium leguminosarum]
 gi|325651257|emb|CBY89450.1| RecA protein [Rhizobium leguminosarum]
 gi|325651259|emb|CBY89451.1| RecA protein [Rhizobium leguminosarum]
 gi|325651261|emb|CBY89452.1| RecA protein [Rhizobium leguminosarum]
 gi|325651263|emb|CBY89453.1| RecA protein [Rhizobium leguminosarum]
 gi|325651265|emb|CBY89454.1| RecA protein [Rhizobium leguminosarum]
 gi|325651267|emb|CBY89455.1| RecA protein [Rhizobium leguminosarum]
 gi|325651271|emb|CBY89457.1| RecA protein [Rhizobium leguminosarum]
 gi|325651277|emb|CBY89460.1| RecA protein [Rhizobium leguminosarum]
 gi|325651279|emb|CBY89461.1| RecA protein [Rhizobium leguminosarum]
 gi|325651281|emb|CBY89462.1| RecA protein [Rhizobium leguminosarum]
 gi|325651283|emb|CBY89463.1| RecA protein [Rhizobium leguminosarum]
 gi|325651285|emb|CBY89464.1| RecA protein [Rhizobium leguminosarum]
 gi|325651287|emb|CBY89465.1| RecA protein [Rhizobium leguminosarum]
 gi|325651289|emb|CBY89466.1| RecA protein [Rhizobium leguminosarum]
          Length = 183

 Score =  303 bits (776), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 147/182 (80%), Positives = 170/182 (93%), Gaps = 1/182 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RS 193
           +S
Sbjct: 180 KS 181


>gi|99866663|gb|ABF67669.1| RecA [Pectobacterium carotovorum]
          Length = 204

 Score =  303 bits (776), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 142/204 (69%), Positives = 173/204 (84%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA + + G TCAF+DA HALD
Sbjct: 1   STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAXREGKTCAFIDAXHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYA+KLGVD+ NLL SQPDTGEQA EI D L RSGAVD+I++DSVAALTP+AEIEG++G
Sbjct: 61  PIYAKKLGVDIDNLLCSQPDTGEQAXEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+S
Sbjct: 121 DSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRV 252
           VRLDIRR G+IK+ + + G++TRV
Sbjct: 181 VRLDIRRTGAIKEGEEVVGSETRV 204


>gi|290795159|gb|ADD64594.1| RecA recombinase [Vibrio sp. SPR145]
          Length = 202

 Score =  303 bits (776), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 143/204 (70%), Positives = 176/204 (86%), Gaps = 2/204 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA
Sbjct: 1   GSIMKLGDNRTM--DVETISTGSLALDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +Q+ G TCAF+DAEHALD IYA+KLGV++ +LL+SQPDTGEQALEI D L RSGA+D++
Sbjct: 59  AAQRVGKTCAFIDAEHALDPIYAQKLGVNINDLLVSQPDTGEQALEICDALARSGAIDVL 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGV
Sbjct: 119 VIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDI 233
           MFGSPETTTGGNALKFY+SVRLDI
Sbjct: 179 MFGSPETTTGGNALKFYASVRLDI 202


>gi|117675791|emb|CAL69166.1| recombinase A [Curtobacterium flaccumfaciens pv. flaccumfaciens]
          Length = 215

 Score =  303 bits (776), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 145/214 (67%), Positives = 174/214 (81%)

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTL +H IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDT EQALEI D
Sbjct: 1   GKTTLTIHAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTAEQALEIAD 60

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           MLVRSG++D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL   +++++  ++
Sbjct: 61  MLVRSGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGGLNQTQTTMI 120

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           FINQ+R KIGV FGSPETT+GG ALKFY+SVRLDIRR+ ++K      GN+TRVKVVKNK
Sbjct: 121 FINQLREKIGVFFGSPETTSGGKALKFYASVRLDIRRIETLKSGTDAVGNRTRVKVVKNK 180

Query: 259 MASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           MA PFKQ EFDI+YG GIS  G L+D GV   IV
Sbjct: 181 MAPPFKQAEFDILYGVGISREGSLLDFGVDHGIV 214


>gi|6694819|gb|AAF25404.1|AF214757_1 RecA protein [Arthrobacter sp. 'SMCC G915']
          Length = 205

 Score =  303 bits (776), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 142/205 (69%), Positives = 173/205 (84%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KL
Sbjct: 1   DVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDAEHALDPEYAAKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD   LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIEGDMG+S  G+Q
Sbjct: 61  GVDTDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           ARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR
Sbjct: 121 ARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRR 180

Query: 236 VGSIKDKDSITGNQTRVKVVKNKMA 260
           + ++K+     GN+T+ K+VKNKMA
Sbjct: 181 IQTLKEGADSVGNRTKAKIVKNKMA 205


>gi|25808113|gb|AAN74121.1| RecA [Helicobacter pylori]
          Length = 209

 Score =  303 bits (776), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 140/208 (67%), Positives = 176/208 (84%), Gaps = 1/208 (0%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAE
Sbjct: 1   IDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+
Sbjct: 61  HALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNAL 223
           GDMG+   G+QARLMS ALRK+T  + +    LVFINQ+RMKIG+M +GSPETTTGGNAL
Sbjct: 121 GDMGDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMMGYGSPETTTGGNAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           KFY+SVR+DIRR+ ++K  +   GN+ +
Sbjct: 181 KFYASVRIDIRRIAALKQNEQHIGNRAK 208


>gi|25808083|gb|AAN74106.1| RecA [Helicobacter pylori]
          Length = 212

 Score =  303 bits (775), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 140/210 (66%), Positives = 176/210 (83%), Gaps = 1/210 (0%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+D
Sbjct: 2   EKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFID 61

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AE
Sbjct: 62  AEHALDVHYAKRLGVDTQNLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAE 121

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGN 221
           I+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGN
Sbjct: 122 IDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGN 181

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ALKFY+SVR+DIRR+  +K  +   GN+ +
Sbjct: 182 ALKFYASVRIDIRRIAGLKQNEQHIGNRAK 211


>gi|18072940|emb|CAC87605.1| recA protein [Azorhizophilus paspali]
 gi|118405785|gb|ABK81258.1| recombinase A [Azorhizophilus paspali]
 gi|118405797|gb|ABK81264.1| recombinase A [Azotobacter vinelandii]
          Length = 197

 Score =  303 bits (775), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 139/197 (70%), Positives = 172/197 (87%)

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+
Sbjct: 1   AEAQKQGATCAFVDAEHALDPDYAAKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDV 60

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMKIG
Sbjct: 61  IIVDSVAALVPKAEIEGEMGDQHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIG 120

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF
Sbjct: 121 VMFGNPETTTGGNALKFYASVRLDIRRTGAVKESDEVIGSETRVKVVKNKVAPPFRQAEF 180

Query: 269 DIMYGEGISFFGELIDL 285
            I+YG+GI   GE+IDL
Sbjct: 181 QILYGKGIYRNGEIIDL 197


>gi|118405787|gb|ABK81259.1| recombinase A [Azorhizophilus paspali]
          Length = 197

 Score =  303 bits (775), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 139/197 (70%), Positives = 172/197 (87%)

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+
Sbjct: 1   AEAQKHGATCAFVDAEHALDPDYAAKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDV 60

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMKIG
Sbjct: 61  IIVDSVAALVPKAEIEGEMGDQHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIG 120

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF
Sbjct: 121 VMFGNPETTTGGNALKFYASVRLDIRRTGAVKESDEVIGSETRVKVVKNKVAPPFRQAEF 180

Query: 269 DIMYGEGISFFGELIDL 285
            I+YG+GI   GE+IDL
Sbjct: 181 QILYGKGIYRNGEIIDL 197


>gi|115498191|gb|ABI98675.1| RecA [Rhizobium sp. CCBAU 33220]
          Length = 183

 Score =  303 bits (775), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 145/184 (78%), Positives = 170/184 (92%), Gaps = 1/184 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LGS  ++ E IE +S+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL 
Sbjct: 1   FGKGSMMKLGSNENVVE-IETISTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAV
Sbjct: 60  TIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMK
Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMK 179

Query: 207 IGVM 210
           IGVM
Sbjct: 180 IGVM 183


>gi|262272839|gb|ACY40639.1| RecA [Leptotrichia trevisanii]
          Length = 239

 Score =  303 bits (775), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 157/238 (65%), Positives = 197/238 (82%), Gaps = 3/238 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALGIGG P+GRIVEIYG ESSGKTTLALH IA++QK GGT AF+DAEHAL
Sbjct: 2   ISTGSLNLDIALGIGGVPRGRIVEIYGAESSGKTTLALHIIAEAQKAGGTVAFIDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+ LGV++  LLISQPDTGEQALEI+DMLVRSGA+D+IV+DSVAAL  +AEIEG+M
Sbjct: 62  DPVYAKALGVNIDELLISQPDTGEQALEISDMLVRSGAMDVIVVDSVAALVAKAEIEGEM 121

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG---VMFGSPETTTGGNALK 224
           G+   G+QARLMS+ALRKLT SIS+S  +++FINQ+R KIG    + G   TT+GG ALK
Sbjct: 122 GDQQMGLQARLMSKALRKLTGSISKSDTVMIFINQIREKIGGFSFVPGVQTTTSGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           F+S+VR++++RVGS+K  D + GN+  VKV KNK+A PFK+ +F +MYG GIS  GE+
Sbjct: 182 FFSTVRMEVKRVGSVKQGDDVVGNEVVVKVTKNKVAPPFKEAKFSVMYGTGISRIGEV 239


>gi|161367354|gb|ABX71082.1| RecA [Vibrio cholerae O1]
          Length = 194

 Score =  303 bits (775), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 138/194 (71%), Positives = 170/194 (87%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  L
Sbjct: 1   GLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDEL 60

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           L+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA
Sbjct: 61  LVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQA 120

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           +RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ 
Sbjct: 121 MRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEG 180

Query: 243 DSITGNQTRVKVVK 256
           + + GN+TR+KVVK
Sbjct: 181 EEVVGNETRIKVVK 194


>gi|112791522|gb|ABI22031.1| recombinase A [Brenneria salicis ATCC 15712]
          Length = 196

 Score =  303 bits (775), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 139/196 (70%), Positives = 171/196 (87%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FI
Sbjct: 61  TRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D + G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEVVGSETRVKVVKNKVA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF I+YGEGI
Sbjct: 181 APFKQAEFQILYGEGI 196


>gi|25808133|gb|AAN74131.1| RecA [Helicobacter pylori]
 gi|25808163|gb|AAN74146.1| RecA [Helicobacter pylori]
 gi|25808165|gb|AAN74147.1| RecA [Helicobacter pylori]
 gi|25808167|gb|AAN74148.1| RecA [Helicobacter pylori]
 gi|25808169|gb|AAN74149.1| RecA [Helicobacter pylori]
 gi|25808171|gb|AAN74150.1| RecA [Helicobacter pylori]
 gi|25808173|gb|AAN74151.1| RecA [Helicobacter pylori]
 gi|25808177|gb|AAN74153.1| RecA [Helicobacter pylori]
 gi|25808179|gb|AAN74154.1| RecA [Helicobacter pylori]
 gi|25808181|gb|AAN74155.1| RecA [Helicobacter pylori]
 gi|25808183|gb|AAN74156.1| RecA [Helicobacter pylori]
 gi|25808185|gb|AAN74157.1| RecA [Helicobacter pylori]
          Length = 212

 Score =  303 bits (775), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 140/210 (66%), Positives = 177/210 (84%), Gaps = 1/210 (0%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+D
Sbjct: 2   EKIDSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFID 61

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AE
Sbjct: 62  AEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAE 121

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGN 221
           I+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGN
Sbjct: 122 IDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGN 181

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ALKFY+SVR+DIRR+ ++K  +   GN+ +
Sbjct: 182 ALKFYASVRIDIRRIAALKQNEQHIGNRAK 211


>gi|18076833|emb|CAC87583.1| recA protein [Pseudomonas aeruginosa]
          Length = 199

 Score =  303 bits (775), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 139/199 (69%), Positives = 174/199 (87%)

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AV
Sbjct: 1   VIAEAQKQGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAV 60

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+I++DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T +I  + C+++FINQ+RMK
Sbjct: 61  DVIIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK++ PF+Q 
Sbjct: 121 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVSPPFRQA 180

Query: 267 EFDIMYGEGISFFGELIDL 285
           EF I+YG+GI   GE+IDL
Sbjct: 181 EFQILYGKGIYRTGEIIDL 199


>gi|198385753|gb|ACH86220.1| RecA [Sinorhizobium medicae]
          Length = 181

 Score =  303 bits (775), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 149/180 (82%), Positives = 167/180 (92%), Gaps = 1/180 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERAFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 181


>gi|213012386|gb|ACJ38759.1| recombination-repair protein [Vibrio campbellii]
 gi|213012390|gb|ACJ38761.1| recombination-repair protein [Vibrio sp. R-608]
 gi|213012392|gb|ACJ38762.1| recombination-repair protein [Vibrio campbellii]
 gi|213012394|gb|ACJ38763.1| recombination-repair protein [Vibrio sp. R-610]
 gi|213012396|gb|ACJ38764.1| recombination-repair protein [Vibrio campbellii]
 gi|213012398|gb|ACJ38765.1| recombination-repair protein [Vibrio sp. R-613]
 gi|213012410|gb|ACJ38771.1| recombination-repair protein [Vibrio sp. R-620]
 gi|213012412|gb|ACJ38772.1| recombination-repair protein [Vibrio harveyi]
 gi|213012414|gb|ACJ38773.1| recombination-repair protein [Vibrio harveyi]
 gi|213012416|gb|ACJ38774.1| recombination-repair protein [Vibrio alginolyticus]
 gi|213012422|gb|ACJ38777.1| recombination-repair protein [Vibrio sp. R-628]
 gi|213012424|gb|ACJ38778.1| recombination-repair protein [Vibrio sp. R-630]
 gi|213012426|gb|ACJ38779.1| recombination-repair protein [Vibrio sp. R-631]
 gi|213012428|gb|ACJ38780.1| recombination-repair protein [Vibrio sp. R-632]
 gi|213012430|gb|ACJ38781.1| recombination-repair protein [Vibrio sp. R-634]
 gi|213012434|gb|ACJ38783.1| recombination-repair protein [Vibrio campbellii]
 gi|213012446|gb|ACJ38789.1| recombination-repair protein [Vibrio campbellii]
 gi|213012448|gb|ACJ38790.1| recombination-repair protein [Vibrio sp. R-647]
 gi|213012454|gb|ACJ38793.1| recombination-repair protein [Vibrio sp. R-650]
 gi|213012468|gb|ACJ38800.1| recombination-repair protein [Vibrio harveyi]
 gi|213012474|gb|ACJ38803.1| recombination-repair protein [Vibrio alginolyticus]
 gi|213012476|gb|ACJ38804.1| recombination-repair protein [Vibrio alginolyticus]
 gi|213012486|gb|ACJ38809.1| recombination-repair protein [Vibrio sp. R-671]
 gi|213012504|gb|ACJ38818.1| recombination-repair protein [Vibrio sp. R-681]
 gi|213012516|gb|ACJ38824.1| recombination-repair protein [Vibrio sp. R-687]
 gi|213012518|gb|ACJ38825.1| recombination-repair protein [Vibrio harveyi]
 gi|213012520|gb|ACJ38826.1| recombination-repair protein [Vibrio harveyi]
 gi|213012522|gb|ACJ38827.1| recombination-repair protein [Vibrio sp. R-691]
 gi|213012524|gb|ACJ38828.1| recombination-repair protein [Vibrio harveyi]
 gi|213012526|gb|ACJ38829.1| recombination-repair protein [Vibrio harveyi]
 gi|213012528|gb|ACJ38830.1| recombination-repair protein [Vibrio harveyi]
 gi|213012530|gb|ACJ38831.1| recombination-repair protein [Vibrio sp. R-695]
 gi|213012532|gb|ACJ38832.1| recombination-repair protein [Vibrio sp. R-696]
 gi|213012534|gb|ACJ38833.1| recombination-repair protein [Vibrio sp. R-697]
 gi|213012542|gb|ACJ38837.1| recombination-repair protein [Vibrio communis]
 gi|213012544|gb|ACJ38838.1| recombination-repair protein [Vibrio ponticus]
 gi|213012550|gb|ACJ38841.1| recombination-repair protein [Vibrio campbellii]
 gi|213012554|gb|ACJ38843.1| recombination-repair protein [Vibrio campbellii]
 gi|213012562|gb|ACJ38847.1| recombination-repair protein [Vibrio harveyi]
 gi|213012572|gb|ACJ38852.1| recombination-repair protein [Vibrio sp. R-725]
 gi|213012574|gb|ACJ38853.1| recombination-repair protein [Vibrio sp. R-726]
          Length = 197

 Score =  303 bits (775), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 137/197 (69%), Positives = 171/197 (86%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMYG 273
           NK+A+PFK+    IMYG
Sbjct: 181 NKIAAPFKEANTQIMYG 197


>gi|112791492|gb|ABI22016.1| recombinase A [Enterobacter cloacae subsp. dissolvens]
          Length = 196

 Score =  303 bits (775), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 138/196 (70%), Positives = 172/196 (87%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FI
Sbjct: 61  ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF I+YGEGI
Sbjct: 181 APFKQAEFQILYGEGI 196


>gi|112791550|gb|ABI22045.1| recombinase A [Erwinia persicina]
          Length = 196

 Score =  303 bits (775), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 139/196 (70%), Positives = 170/196 (86%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIASAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  S  +L+FI
Sbjct: 61  ARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNSGTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSETRVKVVKNKIA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF IMYGEGI
Sbjct: 181 APFKQAEFQIMYGEGI 196


>gi|154184300|gb|ABS70974.1| RecA [Daeguia caeni]
          Length = 183

 Score =  302 bits (774), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 144/184 (78%), Positives = 169/184 (91%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K+KAL+AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG PKGRI+E
Sbjct: 1   KTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG++LPG+QARLMSQALRKLT+SI+
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDALPGLQARLMSQALRKLTASIN 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|18076867|emb|CAC87600.1| recA protein [Pseudomonas putida]
          Length = 199

 Score =  302 bits (774), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 139/199 (69%), Positives = 174/199 (87%)

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA++QK+G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AV
Sbjct: 1   VIAEAQKSGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAV 60

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMK
Sbjct: 61  DVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVK+VKNK++ PF+Q 
Sbjct: 121 IGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKIVKNKVSPPFRQA 180

Query: 267 EFDIMYGEGISFFGELIDL 285
           EF I+YG+GI   GE+IDL
Sbjct: 181 EFQILYGKGIYRKGEIIDL 199


>gi|118405791|gb|ABK81261.1| recombinase A [Azotobacter beijerinckii]
          Length = 197

 Score =  302 bits (774), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 139/197 (70%), Positives = 173/197 (87%)

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK G TCAFVDAE+ALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+
Sbjct: 1   AEAQKQGATCAFVDAENALDPDYAAKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDV 60

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T +I  + C+++FINQ+RMKIG
Sbjct: 61  IIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIG 120

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G++KD D + G++TRVKVVKNK+A PF+Q EF
Sbjct: 121 VMFGNPETTTGGNALKFYASVRLDIRRTGAVKDSDEVVGSETRVKVVKNKVAPPFRQAEF 180

Query: 269 DIMYGEGISFFGELIDL 285
            I+YG+GI   GE+IDL
Sbjct: 181 QILYGKGIYRNGEIIDL 197


>gi|325650926|emb|CBY89646.1| RecA protein [Rhizobium sp. R-46166=t229]
 gi|325650932|emb|CBY89649.1| RecA protein [Rhizobium sp. R-45802=1831]
          Length = 183

 Score =  302 bits (774), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 147/184 (79%), Positives = 166/184 (90%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG+   I E +E VS+GSL LDIALGIGG PKGR++E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRVIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGVCAFVDAEHALDPVYARKLGVDLHNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSGA+D++V+DSVAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT SIS
Sbjct: 120 QALEIVDTLVRSGAIDVLVVDSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKLTGSIS 179

Query: 192 RSKC 195
           RS C
Sbjct: 180 RSNC 183


>gi|117675775|emb|CAL69158.1| recombinase A [Agromyces cerinus subsp. cerinus]
          Length = 208

 Score =  302 bits (774), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 145/205 (70%), Positives = 169/205 (82%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DMLVR
Sbjct: 1   LTLHAIANAQRNGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIADMLVR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  +S++   ++FINQ
Sbjct: 61  SGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLSQTNTTMIFINQ 120

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA P
Sbjct: 121 LREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETMKDGTEAVGNRTRVKVVKNKMAPP 180

Query: 263 FKQVEFDIMYGEGISFFGELIDLGV 287
           FKQ EFDI+YG GIS  G LID GV
Sbjct: 181 FKQAEFDILYGTGISREGSLIDFGV 205


>gi|112791554|gb|ABI22047.1| recombinase A [Erwinia pyrifoliae DSM 12163]
          Length = 196

 Score =  302 bits (774), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 139/196 (70%), Positives = 170/196 (86%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  S  +L+FI
Sbjct: 61  ARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNSGTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSETRVKVVKNKVA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF IMYGEGI
Sbjct: 181 APFKQAEFQIMYGEGI 196


>gi|112791530|gb|ABI22035.1| recombinase A [Erwinia chrysanthemi]
          Length = 196

 Score =  302 bits (774), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 139/196 (70%), Positives = 171/196 (87%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FI
Sbjct: 61  ARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ + + G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGEEVVGSETRVKVVKNKVA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF I+YGEGI
Sbjct: 181 APFKQAEFQILYGEGI 196


>gi|6694801|gb|AAF25386.1|AF214739_1 RecA protein [Arthrobacter sp. 'SMCC G969']
          Length = 209

 Score =  302 bits (774), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 141/206 (68%), Positives = 173/206 (83%)

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
           +ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLG
Sbjct: 4   VALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHALDPEYAAKLG 63

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           VD   LL+SQPDTGEQALEI DML+ SG++D+IVIDSVAAL PRAEIEGDMG+S  G+QA
Sbjct: 64  VDTDALLVSQPDTGEQALEIMDMLIGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQA 123

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           RLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+
Sbjct: 124 RLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRI 183

Query: 237 GSIKDKDSITGNQTRVKVVKNKMASP 262
            ++K+     GN+T+ K+VKNKMA P
Sbjct: 184 QTLKEGADSVGNRTKAKIVKNKMAPP 209


>gi|89143233|emb|CAJ57511.1| recombinase A [Microbacterium aurantiacum]
          Length = 207

 Score =  302 bits (774), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 145/207 (70%), Positives = 170/207 (82%)

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTL LH IA  Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DM
Sbjct: 1   KTTLTLHAIANVQRAGGIAAFIDAEHALDPDYAQKLGVDIDALLVSQPDTGEQALEIADM 60

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           LVRSGA+D++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  ++++   ++F
Sbjct: 61  LVRSGAIDLVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIF 120

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           INQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKM
Sbjct: 121 INQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKM 180

Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLG 286
           A PFKQ EFDI+YG GIS  G LID G
Sbjct: 181 APPFKQAEFDILYGVGISREGSLIDFG 207


>gi|259053119|emb|CAX48570.1| recA protein [Aeromonas tecta]
 gi|289172340|emb|CAX48572.1| recA protein [Aeromonas eucrenophila]
          Length = 186

 Score =  302 bits (774), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 143/185 (77%), Positives = 164/185 (88%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L  IA++QK G TCAFVDAE
Sbjct: 2   IEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGV++  LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE
Sbjct: 62  HALDPIYAAKLGVNVDELLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNALK
Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181

Query: 225 FYSSV 229
           FY+SV
Sbjct: 182 FYASV 186


>gi|282952560|emb|CBI75457.1| DNA repair protein RecA [Pseudomonas grimontii]
 gi|282952564|emb|CBI75459.1| DNA repair protein RecA [Pseudomonas marginalis]
 gi|282952568|emb|CBI75461.1| DNA repair protein RecA [Pseudomonas tolaasii]
 gi|282952570|emb|CBI75462.1| DNA repair protein RecA [Pseudomonas veronii]
          Length = 200

 Score =  302 bits (774), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 141/199 (70%), Positives = 172/199 (86%)

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
           TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IV+DSVAA
Sbjct: 2   TCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAA 61

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPET 216
           L P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFGSPET
Sbjct: 62  LVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPET 121

Query: 217 TTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276
           TTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+YG+GI
Sbjct: 122 TTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQILYGKGI 181

Query: 277 SFFGELIDLGVKASIVDKS 295
              GE+IDLGV    V+KS
Sbjct: 182 YLNGEMIDLGVLHGFVEKS 200


>gi|26554091|ref|NP_758025.1| recombinase A [Mycoplasma penetrans HF-2]
 gi|30316229|sp|Q8EVC7|RECA_MYCPE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|26454099|dbj|BAC44429.1| recombination protein RecA [Mycoplasma penetrans HF-2]
          Length = 329

 Score =  302 bits (774), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 149/325 (45%), Positives = 219/325 (67%), Gaps = 5/325 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN + + KALE A+ +I++ +GK       SQ   F+  +V+ SGS+ LD A+G+GG+PK
Sbjct: 1   MNSMTEQKALELAIKEIEKKFGKETF----SQSESFDN-QVIKSGSILLDNAIGVGGYPK 55

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           G+I+EIYG ESSGKTT+AL  + +  K GG+ A++DAE ++DS Y   LG+D   LL++ 
Sbjct: 56  GKIIEIYGNESSGKTTIALQCVKECIKEGGSVAYIDAECSIDSKYLSHLGIDPTKLLVAT 115

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P+ GEQA  I D L+++  VD+IV+DSVAAL P+ +IE  M +   G  AR+MS+ L+ L
Sbjct: 116 PEYGEQAFSIIDALIKTNMVDLIVVDSVAALVPKNDIESSMEDQSMGTHARMMSKGLKIL 175

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
            +S+S+ K  ++FINQ+R KIGVMFG+ E TTGG ALKF+S++RLD+RR   IK    + 
Sbjct: 176 QTSLSKHKTTVIFINQVREKIGVMFGNNEITTGGRALKFFSTLRLDVRRSELIKSGTDVI 235

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G ++++ V KNK+A PFK    DI + +G     E+ID  ++  I+ KSG+WF +   +L
Sbjct: 236 GIRSKITVTKNKVAPPFKNCFVDIFFNKGFDPTKEIIDFAIEYEIIKKSGSWFYYNETKL 295

Query: 307 GQGRENSKIFLRENIEIAENIESLL 331
            QGR N   +L+EN EI + I+ L+
Sbjct: 296 AQGRNNLDSYLKENNEIYDEIKKLV 320


>gi|18076863|emb|CAC87598.1| recA protein [Pseudomonas putida]
          Length = 199

 Score =  302 bits (774), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 139/199 (69%), Positives = 173/199 (86%)

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AV
Sbjct: 1   VIAEAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAV 60

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMK
Sbjct: 61  DVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVK+VKNK++ PF+Q 
Sbjct: 121 IGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKIVKNKVSPPFRQA 180

Query: 267 EFDIMYGEGISFFGELIDL 285
           EF I+YG+GI   GE+IDL
Sbjct: 181 EFQILYGKGIYRNGEIIDL 199


>gi|298205322|gb|ADI61872.1| recombinase protein A [Mesorhizobium sp. JS6]
          Length = 183

 Score =  302 bits (774), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 144/184 (78%), Positives = 169/184 (91%), Gaps = 1/184 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG+     E IE VS+GSLGLDIALG+GG P+GRIVEIYGPESSGKTT+ALH
Sbjct: 1   FGKGSVMRLGANEKSVE-IETVSTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTMALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS  +++FINQ+RMK
Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMK 179

Query: 207 IGVM 210
           IGVM
Sbjct: 180 IGVM 183


>gi|89145054|emb|CAJ57535.1| recombinase A [Microbacterium thalassium]
          Length = 206

 Score =  302 bits (774), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 145/206 (70%), Positives = 170/206 (82%)

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTL LH IA  QK GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI D
Sbjct: 1   GKTTLTLHAIANVQKAGGIAAFIDAEHALDPDYAQKLGVDIDALLVSQPDTGEQALEIAD 60

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           ML+RSGA+D++VIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKLT  ++++K   +
Sbjct: 61  MLIRSGAIDLVVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLTGGLNQTKTTAI 120

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNK
Sbjct: 121 FINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGSDAVGNRTRVKVVKNK 180

Query: 259 MASPFKQVEFDIMYGEGISFFGELID 284
           MA PFKQ EFDI+YG GIS  G LID
Sbjct: 181 MAPPFKQAEFDILYGVGISREGSLID 206


>gi|99866671|gb|ABF67673.1| RecA [Pectobacterium carotovorum]
 gi|99866673|gb|ABF67674.1| RecA [Pectobacterium carotovorum]
 gi|99866675|gb|ABF67675.1| RecA [Pectobacterium carotovorum]
 gi|99866677|gb|ABF67676.1| RecA [Pectobacterium carotovorum]
 gi|99866679|gb|ABF67677.1| RecA [Pectobacterium carotovorum]
 gi|99866681|gb|ABF67678.1| RecA [Pectobacterium carotovorum]
 gi|99866685|gb|ABF67680.1| RecA [Pectobacterium carotovorum]
 gi|115361700|gb|ABF67682.1| RecA [Pectobacterium carotovorum]
          Length = 194

 Score =  302 bits (773), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 142/193 (73%), Positives = 168/193 (87%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD
Sbjct: 1   STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G
Sbjct: 61  PIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+S
Sbjct: 121 DSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKD 241
           VRLDIRR G+IKD
Sbjct: 181 VRLDIRRTGAIKD 193


>gi|223366143|gb|ACM88607.1| RecA [Rhizobium sp. CVIII4]
          Length = 183

 Score =  302 bits (773), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 147/182 (80%), Positives = 169/182 (92%), Gaps = 1/182 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKL +S
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLXAS 181

Query: 190 IS 191
           IS
Sbjct: 182 IS 183


>gi|112791556|gb|ABI22048.1| recombinase A [Erwinia americana]
 gi|112791558|gb|ABI22049.1| recombinase A [Rahnella aquatilis]
          Length = 196

 Score =  302 bits (773), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 139/196 (70%), Positives = 170/196 (86%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FI
Sbjct: 61  TRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDVVVGSETRVKVVKNKIA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF IMYGEGI
Sbjct: 181 APFKQAEFQIMYGEGI 196


>gi|89145056|emb|CAJ57536.1| recombinase A [Agromyces albus]
          Length = 207

 Score =  302 bits (773), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 146/206 (70%), Positives = 170/206 (82%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL LH IA +Q+ GG  AFVDAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DMLV
Sbjct: 1   TLTLHAIANAQRAGGIAAFVDAEHALDPDYAKKLGVDIDALLVSQPDTGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG++D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  ++++   ++FIN
Sbjct: 61  RSGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIFIN 120

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA 
Sbjct: 121 QLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKMAP 180

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGV 287
           PFKQ EFDI+YG GIS  G LID GV
Sbjct: 181 PFKQAEFDILYGIGISREGSLIDYGV 206


>gi|298103534|emb|CBH19578.1| recombinase A [Mesorhizobium sp. CPS13]
          Length = 189

 Score =  302 bits (773), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 144/187 (77%), Positives = 171/187 (91%), Gaps = 1/187 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L+AALSQI+R +GKG+IM+LG+   + E I  VS+GSLGLDIALG+GG P+GRI+EIYGP
Sbjct: 2   LDAALSQIERAFGKGSIMRLGANEQVVE-IGTVSTGSLGLDIALGVGGLPRGRIIEIYGP 60

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 61  ESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALE 120

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS  
Sbjct: 121 ICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNT 180

Query: 196 ILVFINQ 202
           +++FINQ
Sbjct: 181 MVIFINQ 187


>gi|89145179|emb|CAJ57525.1| recombinase A [Microbacterium laevaniformans]
          Length = 211

 Score =  302 bits (773), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 145/210 (69%), Positives = 173/210 (82%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA  Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DMLVRSGA+D
Sbjct: 2   IANVQRAGGIAAFIDAEHALDPDYAQKLGVDIDQLLVSQPDTGEQALEIADMLVRSGAID 61

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  ++++   ++FINQ+R KI
Sbjct: 62  LVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLREKI 121

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA PFKQ E
Sbjct: 122 GVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVGNRTRVKVVKNKMAPPFKQAE 181

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           FDI+YG GIS  G LID GV+ ++V KSGA
Sbjct: 182 FDILYGTGISREGSLIDFGVEHALVKKSGA 211


>gi|213012540|gb|ACJ38836.1| recombination-repair protein [Vibrio sinaloensis]
          Length = 194

 Score =  302 bits (773), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 140/194 (72%), Positives = 169/194 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDI 270
           NK+A+PFKQ E  I
Sbjct: 181 NKIAAPFKQAETQI 194


>gi|325650824|emb|CBY89595.1| RecA protein [Rhizobium leguminosarum]
          Length = 180

 Score =  302 bits (773), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 147/181 (81%), Positives = 169/181 (93%), Gaps = 1/181 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 R 192
           +
Sbjct: 180 K 180


>gi|6694853|gb|AAF25438.1|AF214791_1 RecA protein [Arthrobacter uratoxydans]
          Length = 205

 Score =  302 bits (773), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 144/205 (70%), Positives = 173/205 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAE
Sbjct: 1   IEVIPTGSVALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVASAQRNGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA+KLGVD   LL+SQPDTGEQALEI DMLV SGA+DIIVIDSVAAL PRAEIE
Sbjct: 61  HALDPEYAKKLGVDTDALLVSQPDTGEQALEIMDMLVGSGALDIIVIDSVAALVPRAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRK+T  +S SK   +FINQ+R KIGV FGSPETTTGG ALK
Sbjct: 121 GEMGDSHVGLQARLMSQALRKITGRLSASKTTAIFINQLREKIGVFFGSPETTTGGKALK 180

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQ 249
           FY+SVR+DIRR+ ++K+  +  GN+
Sbjct: 181 FYASVRIDIRRIETLKEGTNPVGNR 205


>gi|23194271|gb|AAN15083.1| RecA protein [Vibrio cholerae]
          Length = 197

 Score =  302 bits (773), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 137/197 (69%), Positives = 171/197 (86%)

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALE
Sbjct: 1   ESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALE 60

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 61  ICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 120

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVV
Sbjct: 121 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVV 180

Query: 256 KNKMASPFKQVEFDIMY 272
           KNK+A+PFK+    IMY
Sbjct: 181 KNKIAAPFKEANTQIMY 197


>gi|38091040|emb|CAE52525.1| recombination protein [Lactobacillus delbrueckii subsp. indicus]
          Length = 226

 Score =  301 bits (772), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 140/228 (61%), Positives = 186/228 (81%), Gaps = 2/228 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKGA+M++G +  +   I  V SGSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH 
Sbjct: 1   GKGAVMRMGEK--VDTQISTVPSGSLALDAALGVGGYPRGRIVEIYGPESSGKTTVALHA 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           +A+ QK GGT A++DAE+A+D  YA  LGVD+  L++SQP+TGE+ L+I D L+ SGA+D
Sbjct: 59  VAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDQLILSQPNTGEEGLQIADTLISSGAID 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           I+V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+
Sbjct: 119 IVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGTIAKTKTIAIFINQIREKV 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           GVMFG+PETT GG ALKFYS++RL++RR   IK   ++ GN+ ++KVV
Sbjct: 179 GVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSTNVIGNRVKIKVV 226


>gi|18076845|emb|CAC87589.1| recA protein [Pseudomonas flavescens]
          Length = 199

 Score =  301 bits (772), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 139/199 (69%), Positives = 173/199 (86%)

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA++Q+ G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+
Sbjct: 1   VIAEAQRMGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAI 60

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMK
Sbjct: 61  DVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q 
Sbjct: 121 IGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQA 180

Query: 267 EFDIMYGEGISFFGELIDL 285
           EF I+YG+GI   GE+IDL
Sbjct: 181 EFQILYGKGIYRNGEIIDL 199


>gi|213012472|gb|ACJ38802.1| recombination-repair protein [Vibrio sp. R-664]
          Length = 197

 Score =  301 bits (772), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 136/197 (69%), Positives = 171/197 (86%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G TCA++DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQREGKTCAYIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMYG 273
           NK+A+PFK+    IMYG
Sbjct: 181 NKIAAPFKEANTQIMYG 197


>gi|299152209|gb|ADJ18194.1| recombinase A [Rhizobium miluonense]
          Length = 183

 Score =  301 bits (772), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 144/182 (79%), Positives = 169/182 (92%), Gaps = 1/182 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           +G++M+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TI
Sbjct: 3   RGSVMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 61

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 62  AEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDV 121

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+SK +++FINQ+RMKIG
Sbjct: 122 LVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSKTMVIFINQIRMKIG 181

Query: 209 VM 210
           VM
Sbjct: 182 VM 183


>gi|25808189|gb|AAN74159.1| RecA [Helicobacter pylori]
          Length = 209

 Score =  301 bits (772), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 139/208 (66%), Positives = 176/208 (84%), Gaps = 1/208 (0%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAE
Sbjct: 1   IDSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+
Sbjct: 61  HALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNAL 223
           GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNAL
Sbjct: 121 GDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           KFY+SVR+DIRR+ ++K  +   GN+ +
Sbjct: 181 KFYASVRIDIRRIAALKQNEQHIGNRAK 208


>gi|325650918|emb|CBY89642.1| RecA protein [Rhizobium sp. R-45989=B577]
          Length = 181

 Score =  301 bits (772), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 148/180 (82%), Positives = 167/180 (92%), Gaps = 1/180 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E +S+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETISTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVDI+V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDILVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181


>gi|18076861|emb|CAC87597.1| recA protein [Pseudomonas mendocina]
          Length = 199

 Score =  301 bits (772), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 139/199 (69%), Positives = 173/199 (86%)

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+
Sbjct: 1   VIAEAQKLGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAI 60

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMK
Sbjct: 61  DVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFGSPETTTGGNALKFYSSVRLDIRR G++K+ + + G++TRVK+VKNK+A PF+Q 
Sbjct: 121 IGVMFGSPETTTGGNALKFYSSVRLDIRRTGAVKEGEEVVGSETRVKIVKNKVAPPFRQA 180

Query: 267 EFDIMYGEGISFFGELIDL 285
           EF I+YG+GI   GE+IDL
Sbjct: 181 EFQILYGKGIYRNGEIIDL 199


>gi|112791526|gb|ABI22033.1| recombinase A [Brenneria alni]
          Length = 196

 Score =  301 bits (772), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 138/196 (70%), Positives = 171/196 (87%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FI
Sbjct: 61  TRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ + + G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGEEVVGSETRVKVVKNKVA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF I+YGEGI
Sbjct: 181 APFKQAEFQILYGEGI 196


>gi|112791524|gb|ABI22032.1| recombinase A [Brenneria rubrifaciens]
          Length = 196

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 138/196 (70%), Positives = 171/196 (87%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FI
Sbjct: 61  TRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ + + G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGEEVVGSETRVKVVKNKVA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF I+YGEGI
Sbjct: 181 APFKQAEFQILYGEGI 196


>gi|325651177|emb|CBY89410.1| RecA protein [Mesorhizobium loti]
 gi|325651199|emb|CBY89421.1| RecA protein [Mesorhizobium sp. R-46044]
 gi|325651201|emb|CBY89422.1| RecA protein [Mesorhizobium sp. R-46045]
          Length = 183

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 145/182 (79%), Positives = 168/182 (92%), Gaps = 1/182 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRIVE
Sbjct: 1   KSKALDAALSQIERAFGKGSIMRLGANDQVVE-IETVPTGSLGLDIALGVGGLPRGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RS 193
           RS
Sbjct: 180 RS 181


>gi|115498179|gb|ABI98669.1| RecA [Rhizobium sp. CCBAU 23084]
          Length = 183

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 147/184 (79%), Positives = 169/184 (91%), Gaps = 1/184 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LGS  +I E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL 
Sbjct: 1   FGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE+ALEITD LVRSGAV
Sbjct: 60  TIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGERALEITDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++VIDSVAALTPRAEIEG+ G+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMK
Sbjct: 120 DVLVIDSVAALTPRAEIEGETGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMK 179

Query: 207 IGVM 210
           IGVM
Sbjct: 180 IGVM 183


>gi|325651137|emb|CBY89390.1| RecA protein [Sinorhizobium meliloti]
          Length = 183

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 148/184 (80%), Positives = 167/184 (90%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEA   QI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAXXXQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|89145181|emb|CAJ57526.1| recombinase A [Microbacterium luteolum]
          Length = 209

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 147/209 (70%), Positives = 171/209 (81%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ GG  AF+DAEHALD  YA KLGVD+  LL+SQPDTGEQALEI DMLVRSGA+D
Sbjct: 1   IANAQRAGGIAAFIDAEHALDPDYAAKLGVDIDALLVSQPDTGEQALEIADMLVRSGAID 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  ++++   ++FINQ+R KI
Sbjct: 61  LIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLREKI 120

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA PFKQ E
Sbjct: 121 GVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVGNRTRVKVVKNKMAPPFKQAE 180

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSG 296
           FDI+YG GIS  G LID GV+  IV KSG
Sbjct: 181 FDILYGVGISREGSLIDFGVEHGIVKKSG 209


>gi|110003025|emb|CAJ57799.1| recombinase A [Mesorhizobium loti]
 gi|110003027|emb|CAJ57800.1| recombinase A [Mesorhizobium mediterraneum]
 gi|325651179|emb|CBY89411.1| RecA protein [Mesorhizobium sp. R-45754]
 gi|325651181|emb|CBY89412.1| RecA protein [Mesorhizobium sp. R-45755]
 gi|325651183|emb|CBY89413.1| RecA protein [Mesorhizobium sp. R-45768]
 gi|325651189|emb|CBY89416.1| RecA protein [Mesorhizobium sp. R-45567]
 gi|325651193|emb|CBY89418.1| RecA protein [Mesorhizobium sp. R-45615]
 gi|325651207|emb|CBY89425.1| RecA protein [Mesorhizobium sp. R-46108]
 gi|325651209|emb|CBY89426.1| RecA protein [Mesorhizobium sp. R-46110]
 gi|325651211|emb|CBY89427.1| RecA protein [Mesorhizobium sp. R-45994]
          Length = 183

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 145/182 (79%), Positives = 168/182 (92%), Gaps = 1/182 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRIVE
Sbjct: 1   KSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RS 193
           RS
Sbjct: 180 RS 181


>gi|25808145|gb|AAN74137.1| RecA [Helicobacter pylori]
          Length = 212

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 139/210 (66%), Positives = 176/210 (83%), Gaps = 1/210 (0%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG C F+D
Sbjct: 2   EKIDSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCTFID 61

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AE
Sbjct: 62  AEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAE 121

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGN 221
           I+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGN
Sbjct: 122 IDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGN 181

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ALKFY+SVR+DIRR+ ++K  +   GN+ +
Sbjct: 182 ALKFYASVRIDIRRIAALKQNEQHIGNRAK 211


>gi|325650664|emb|CBY89515.1| RecA protein [Rhizobium leguminosarum]
          Length = 180

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 146/181 (80%), Positives = 169/181 (93%), Gaps = 1/181 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 R 192
           +
Sbjct: 180 K 180


>gi|325650780|emb|CBY89573.1| RecA protein [Rhizobium leguminosarum]
          Length = 183

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 146/182 (80%), Positives = 169/182 (92%), Gaps = 1/182 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKA EAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+E
Sbjct: 1   KSKAXEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RS 193
           +S
Sbjct: 180 KS 181


>gi|25808151|gb|AAN74140.1| RecA [Helicobacter pylori]
          Length = 212

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 139/210 (66%), Positives = 176/210 (83%), Gaps = 1/210 (0%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+D
Sbjct: 2   EKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFID 61

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AE
Sbjct: 62  AEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAE 121

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGN 221
           I+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGN
Sbjct: 122 IDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGN 181

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ALKFY+SVR+DIRR+ S+K  +   GN+ +
Sbjct: 182 ALKFYASVRIDIRRIASLKQNEQHIGNRAK 211


>gi|112791504|gb|ABI22022.1| recombinase A [Enterobacter pyrinus]
          Length = 195

 Score =  301 bits (770), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 137/195 (70%), Positives = 171/195 (87%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD++V+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FI
Sbjct: 61  ARSGAVDVLVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSETRVKVVKNKIA 180

Query: 261 SPFKQVEFDIMYGEG 275
           +PFKQ EF I+YGEG
Sbjct: 181 APFKQAEFPILYGEG 195


>gi|112791552|gb|ABI22046.1| recombinase A [Erwinia amylovora]
          Length = 196

 Score =  301 bits (770), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 138/196 (70%), Positives = 170/196 (86%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  S  +L+FI
Sbjct: 61  ARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNSGTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSETRVKVVKNKVA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF I+YGEGI
Sbjct: 181 APFKQAEFQILYGEGI 196


>gi|25808157|gb|AAN74143.1| RecA [Helicobacter pylori]
          Length = 207

 Score =  301 bits (770), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 139/205 (67%), Positives = 174/205 (84%), Gaps = 1/205 (0%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHAL
Sbjct: 2   ISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDM
Sbjct: 62  DVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM 121

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFY 226
           G+   G+QARLMS ALRK+T  + +    LVFINQ+RMKIG+M +GSPETTTGGNALKFY
Sbjct: 122 GDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMMGYGSPETTTGGNALKFY 181

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTR 251
           +SVR+DIRR+ ++K  +   GN+ +
Sbjct: 182 ASVRIDIRRIAALKQNEQHIGNRAK 206


>gi|112791510|gb|ABI22025.1| recombinase A [Pectobacterium wasabiae]
          Length = 196

 Score =  301 bits (770), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 138/196 (70%), Positives = 170/196 (86%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FI
Sbjct: 61  TRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD + + G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVGSETRVKVVKNKVA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF I+YGEGI
Sbjct: 181 APFKQAEFQILYGEGI 196


>gi|25808095|gb|AAN74112.1| RecA [Helicobacter pylori]
          Length = 212

 Score =  301 bits (770), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 139/210 (66%), Positives = 176/210 (83%), Gaps = 1/210 (0%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+D
Sbjct: 2   EKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFID 61

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AE
Sbjct: 62  AEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAE 121

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGN 221
           I+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+  +GSPETTTGGN
Sbjct: 122 IDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMTGYGSPETTTGGN 181

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ALKFY+SVR+DIRR+ ++K  +   GN+ +
Sbjct: 182 ALKFYASVRIDIRRIAALKQNEQHIGNRAK 211


>gi|146286275|gb|ABL11493.2| RecA [Rhizobium sp. PEVF10]
          Length = 181

 Score =  301 bits (770), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 146/181 (80%), Positives = 169/181 (93%), Gaps = 1/181 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EI
Sbjct: 1   SKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+
Sbjct: 120 ALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISK 179

Query: 193 S 193
           S
Sbjct: 180 S 180


>gi|213012552|gb|ACJ38842.1| recombination-repair protein [Vibrio tubiashii]
          Length = 192

 Score =  301 bits (770), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 137/191 (71%), Positives = 168/191 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVE 267
           NK+A+PFKQ E
Sbjct: 181 NKIAAPFKQAE 191


>gi|323147035|gb|ADX32799.1| recombinase A [endophytic bacterium 15(2011)]
          Length = 196

 Score =  301 bits (770), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 142/197 (72%), Positives = 175/197 (88%), Gaps = 1/197 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG++M+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSVMRLGA-GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LVRS
Sbjct: 60  TLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPDTGEQALEIADALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGG 220
           RMKIGVMFG+PETTTGG
Sbjct: 180 RMKIGVMFGNPETTTGG 196


>gi|213012494|gb|ACJ38813.1| recombination-repair protein [Vibrio tubiashii]
          Length = 192

 Score =  301 bits (770), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 137/191 (71%), Positives = 168/191 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVE 267
           NK+A+PFKQ E
Sbjct: 181 NKIAAPFKQAE 191


>gi|225008772|gb|ACN78934.1| RecA [Rhizobium sp. HETP03]
          Length = 186

 Score =  301 bits (770), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 147/184 (79%), Positives = 168/184 (91%), Gaps = 1/184 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P
Sbjct: 4   EXKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLP 62

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 63  RGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 122

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+ LPG+QARLMSQALRK
Sbjct: 123 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDXLPGLQARLMSQALRK 182

Query: 186 LTSS 189
           LT+S
Sbjct: 183 LTAS 186


>gi|112791528|gb|ABI22034.1| recombinase A [Brenneria nigrifluens]
          Length = 195

 Score =  301 bits (770), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 138/195 (70%), Positives = 170/195 (87%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L 
Sbjct: 1   TLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALT 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FIN
Sbjct: 61  RSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFIN 120

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D + G++TRVKVVKNK+A+
Sbjct: 121 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEVVGSETRVKVVKNKVAA 180

Query: 262 PFKQVEFDIMYGEGI 276
           PFKQ EF I+YGEGI
Sbjct: 181 PFKQAEFQILYGEGI 195


>gi|313870907|gb|ADR82343.1| DNA recombination protein RecA [Yersinia pseudotuberculosis]
 gi|313870909|gb|ADR82344.1| DNA recombination protein RecA [Yersinia pseudotuberculosis]
 gi|313870911|gb|ADR82345.1| DNA recombination protein RecA [Yersinia pseudotuberculosis]
 gi|313870915|gb|ADR82347.1| DNA recombination protein RecA [Yersinia pseudotuberculosis]
 gi|313870917|gb|ADR82348.1| DNA recombination protein RecA [Yersinia pseudotuberculosis]
 gi|313870919|gb|ADR82349.1| DNA recombination protein RecA [Yersinia pseudotuberculosis]
 gi|313870921|gb|ADR82350.1| DNA recombination protein RecA [Yersinia pseudotuberculosis]
 gi|313870925|gb|ADR82352.1| DNA recombination protein RecA [Yersinia sp. Y25]
 gi|313870927|gb|ADR82353.1| DNA recombination protein RecA [Yersinia pseudotuberculosis]
 gi|313870929|gb|ADR82354.1| DNA recombination protein RecA [Yersinia pseudotuberculosis]
 gi|313870931|gb|ADR82355.1| DNA recombination protein RecA [Yersinia pseudotuberculosis]
 gi|313870933|gb|ADR82356.1| DNA recombination protein RecA [Yersinia pseudotuberculosis]
          Length = 194

 Score =  301 bits (770), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 137/194 (70%), Positives = 170/194 (87%)

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           CAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAAL
Sbjct: 1   CAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAAL 60

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
           TP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ+RMKIGVMFG+PETT
Sbjct: 61  TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQIRMKIGVMFGNPETT 120

Query: 218 TGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277
           TGGNALKFY+SVRLDIRR+G++KD D + G++TRVKVVKNK+A+PFKQ EF I+YGEGI+
Sbjct: 121 TGGNALKFYASVRLDIRRIGAVKDGDVVVGSETRVKVVKNKIAAPFKQAEFQILYGEGIN 180

Query: 278 FFGELIDLGVKASI 291
             GEL+DLGVK  +
Sbjct: 181 INGELVDLGVKHKL 194


>gi|223366147|gb|ACM88609.1| RecA [Rhizobium sp. MVP01]
          Length = 185

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 147/182 (80%), Positives = 168/182 (92%), Gaps = 1/182 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R  GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 5   VDKSKALEAALSQIERSXGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 64  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKL +S
Sbjct: 124 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLXAS 183

Query: 190 IS 191
           IS
Sbjct: 184 IS 185


>gi|112791562|gb|ABI22051.1| recombinase A [Serratia marcescens]
          Length = 194

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 137/194 (70%), Positives = 169/194 (87%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L R
Sbjct: 1   LTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ
Sbjct: 61  SGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQ 120

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK++D + G++TRVKVVKNK+A+P
Sbjct: 121 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKERDKVVGSETRVKVVKNKIAAP 180

Query: 263 FKQVEFDIMYGEGI 276
           FKQ EF IMYGEGI
Sbjct: 181 FKQAEFQIMYGEGI 194


>gi|114150690|gb|ABI51991.1| recombinase A [Pseudomonas fluorescens]
 gi|114150692|gb|ABI51992.1| recombinase A [Pseudomonas fluorescens]
          Length = 194

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 139/194 (71%), Positives = 169/194 (87%)

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IV+D
Sbjct: 1   KMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVD 60

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFG
Sbjct: 61  SVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFG 120

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           SPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+Y
Sbjct: 121 SPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQILY 180

Query: 273 GEGISFFGELIDLG 286
           G+GI   GE+IDLG
Sbjct: 181 GKGIYLNGEMIDLG 194


>gi|109944610|emb|CAI84894.1| recombinase A [Lactobacillus plantarum]
          Length = 223

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 142/223 (63%), Positives = 184/223 (82%), Gaps = 2/223 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKGAIM++G        I  +SSGSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH
Sbjct: 3   FGKGAIMRMGDAAQTT--ISTISSGSLALDDALGVGGYPRGRIVEIYGPESSGKTTVALH 60

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            +A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGEQ LEI D LV SGAV
Sbjct: 61  AVAEVQKQGGTAAYIDAENALDPVYAEHLGVNIDDLLLSQPDTGEQGLEIADALVSSGAV 120

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           DI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +++++K I +FINQ+R K
Sbjct: 121 DILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTLNKTKTIALFINQIREK 180

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +GVMFG+PETT GG ALKFY+++RL++RR   IK+  +I GN+
Sbjct: 181 VGVMFGNPETTPGGRALKFYATIRLEVRRAEQIKEGTNIIGNR 223


>gi|25808085|gb|AAN74107.1| RecA [Helicobacter pylori]
          Length = 212

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 139/210 (66%), Positives = 176/210 (83%), Gaps = 1/210 (0%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+D
Sbjct: 2   EKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFID 61

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AE
Sbjct: 62  AEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAE 121

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGN 221
           I+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGN
Sbjct: 122 IDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGN 181

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ALKFY+S R+DIRR+ ++K  +   GN+ +
Sbjct: 182 ALKFYASGRIDIRRIAALKQNEQHIGNRAK 211


>gi|298205324|gb|ADI61873.1| recombinase protein A [Mesorhizobium sp. JS9]
          Length = 183

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 143/184 (77%), Positives = 168/184 (91%), Gaps = 1/184 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG+     E IE  S+GSLGLDIALG+GG P+GRIVEIYGPESSGKTT+ALH
Sbjct: 1   FGKGSVMRLGANEKSVE-IETASTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTMALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS  +++FINQ+RMK
Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMK 179

Query: 207 IGVM 210
           IGVM
Sbjct: 180 IGVM 183


>gi|213012304|gb|ACJ38718.1| recombination-repair protein [Vibrio alginolyticus]
 gi|213012384|gb|ACJ38758.1| recombination-repair protein [Vibrio sp. R-600]
 gi|213012404|gb|ACJ38768.1| recombination-repair protein [Vibrio sp. R-617]
 gi|213012432|gb|ACJ38782.1| recombination-repair protein [Vibrio alginolyticus]
 gi|213012500|gb|ACJ38816.1| recombination-repair protein [Vibrio sp. R-679]
          Length = 196

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 136/196 (69%), Positives = 170/196 (86%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMY 272
           NK+A+PFK+    IMY
Sbjct: 181 NKIAAPFKEANTQIMY 196


>gi|225008764|gb|ACN78930.1| RecA [Rhizobium sp. HUTP01]
          Length = 184

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 146/181 (80%), Positives = 168/181 (92%), Gaps = 1/181 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 5   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 64  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKL +S
Sbjct: 124 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLXAS 183

Query: 190 I 190
           I
Sbjct: 184 I 184


>gi|223366141|gb|ACM88606.1| RecA [Rhizobium leguminosarum]
          Length = 184

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 146/182 (80%), Positives = 168/182 (92%), Gaps = 1/182 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDK K LEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 4   VDKXKXLEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 63  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 123 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 182

Query: 190 IS 191
           IS
Sbjct: 183 IS 184


>gi|99866631|gb|ABF67653.1| RecA [Pectobacterium carotovorum]
          Length = 204

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 141/204 (69%), Positives = 172/204 (84%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA + + G TCAF+DAEHALD
Sbjct: 1   STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAXREGKTCAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYA+KLGVD+ NLL SQPDTGEQA EI D L RSGAVD+I++DS AALTP+AEIEG++G
Sbjct: 61  PIYAKKLGVDIXNLLCSQPDTGEQAXEIXDALTRSGAVDVIIVDSXAALTPKAEIEGEIG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+ AR+MSQA+RKL  ++ ++  +L+ INQ+RMKIGVMFG+PETTTGGNALKFY+S
Sbjct: 121 DSHMGLXARMMSQAMRKLAGNLXQANTLLIXINQIRMKIGVMFGNPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRV 252
           VRLDIRR G+IK+ + + G++TRV
Sbjct: 181 VRLDIRRTGAIKEGEEVVGSETRV 204


>gi|325651195|emb|CBY89419.1| RecA protein [Mesorhizobium sp. R-46042]
 gi|325651197|emb|CBY89420.1| RecA protein [Mesorhizobium sp. R-46043]
 gi|325651203|emb|CBY89423.1| RecA protein [Mesorhizobium sp. R-46071]
 gi|325651205|emb|CBY89424.1| RecA protein [Mesorhizobium sp. R-46074]
 gi|325651213|emb|CBY89428.1| RecA protein [Mesorhizobium sp. R-46209]
          Length = 183

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 144/182 (79%), Positives = 168/182 (92%), Gaps = 1/182 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI+E
Sbjct: 1   KSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RS 193
           RS
Sbjct: 180 RS 181


>gi|112791536|gb|ABI22038.1| recombinase A [Pectobacterium cypripedii]
          Length = 196

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 137/196 (69%), Positives = 170/196 (86%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FI
Sbjct: 61  ARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSETRVKVVKNKIA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF IMYGE +
Sbjct: 181 APFKQAEFQIMYGERV 196


>gi|213012538|gb|ACJ38835.1| recombination-repair protein [Vibrio sp. R-700]
          Length = 197

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 136/196 (69%), Positives = 170/196 (86%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMY 272
           NK+A+PFK+    IMY
Sbjct: 181 NKIAAPFKEANTQIMY 196


>gi|25808103|gb|AAN74116.1| RecA [Helicobacter pylori]
          Length = 212

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 138/210 (65%), Positives = 176/210 (83%), Gaps = 1/210 (0%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+D
Sbjct: 2   EKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFID 61

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AE
Sbjct: 62  AEHALDVYYAKRLGVDTQNLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAE 121

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGN 221
           I+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGN
Sbjct: 122 IDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGN 181

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ALKFY+SVR+DIRR+ ++K  +   GN+ +
Sbjct: 182 ALKFYASVRIDIRRIAALKQNEQHIGNRAK 211


>gi|209413811|emb|CAP78951.1| recombinase A [Leuconostoc holzapfelii]
          Length = 239

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 155/237 (65%), Positives = 189/237 (79%), Gaps = 2/237 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM LG        ++   SGS+ LD+ALG+GG+PKGRI+EIYGPESSGKTTLALH +
Sbjct: 5   KGSIMVLGDNA--LTQVDTYPSGSVKLDVALGVGGYPKGRIIEIYGPESSGKTTLALHAV 62

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GGT A++DAE+ALD  YA  LGV    LL+SQPDTGEQ LEI D LV+SGAVDI
Sbjct: 63  AEVQKAGGTAAYIDAENALDVKYAEALGVQKDELLLSQPDTGEQGLEIADALVQSGAVDI 122

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL  +++R+  I +FINQ+R KIG
Sbjct: 123 IVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIG 182

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           VMFG+PETT GG ALKFYS++ L++RR   IKD   ++GN T+VKVVKNK+A PFKQ
Sbjct: 183 VMFGNPETTPGGRALKFYSTIHLEVRRSTQIKDGTDVSGNLTKVKVVKNKVAPPFKQ 239


>gi|9909863|emb|CAC04386.1| RecA protein [Rhizobium etli]
          Length = 177

 Score =  300 bits (768), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 148/178 (83%), Positives = 166/178 (93%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSLGLDIALGIGG PKGRI+EIYGP
Sbjct: 1   LEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S
Sbjct: 120 ITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 177


>gi|89145048|emb|CAJ57532.1| recombinase A [Microbacterium schleiferi]
          Length = 208

 Score =  300 bits (768), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 145/206 (70%), Positives = 170/206 (82%)

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DML+RSGA+D++VI
Sbjct: 3   QKAGGIAAFIDAEHALDPDYAQKLGVDIDQLLVSQPDTGEQALEIADMLIRSGAIDLVVI 62

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  ++++K   +FINQ+R KIGV F
Sbjct: 63  DSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTKTTAIFINQLREKIGVFF 122

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           GSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA PFKQ EFDI+
Sbjct: 123 GSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVGNRTRVKVVKNKMAPPFKQAEFDIL 182

Query: 272 YGEGISFFGELIDLGVKASIVDKSGA 297
           YG GIS  G LID GV+  IV KSGA
Sbjct: 183 YGTGISREGSLIDFGVEHGIVKKSGA 208


>gi|213012560|gb|ACJ38846.1| recombination-repair protein [Vibrio tubiashii]
          Length = 194

 Score =  300 bits (768), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 138/194 (71%), Positives = 168/194 (86%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAF DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLECIAAAQKQGKTCAFFDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDI 270
           NK+A+PFKQ E  I
Sbjct: 181 NKIAAPFKQAETQI 194


>gi|299152211|gb|ADJ18195.1| recombinase A [Rhizobium hainanense]
          Length = 178

 Score =  300 bits (768), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 143/179 (79%), Positives = 166/179 (92%), Gaps = 1/179 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           +M+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++
Sbjct: 1   VMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEA 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+
Sbjct: 60  QKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVV 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 120 DSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 178


>gi|112791560|gb|ABI22050.1| recombinase A [Yersinia enterocolitica]
          Length = 196

 Score =  300 bits (768), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 137/196 (69%), Positives = 170/196 (86%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FI
Sbjct: 61  TRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D + G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDVVVGSETRVKVVKNKIA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF I+YGEGI
Sbjct: 181 APFKQAEFQILYGEGI 196


>gi|25808087|gb|AAN74108.1| RecA [Helicobacter pylori]
 gi|25808089|gb|AAN74109.1| RecA [Helicobacter pylori]
 gi|25808093|gb|AAN74111.1| RecA [Helicobacter pylori]
 gi|25808115|gb|AAN74122.1| RecA [Helicobacter pylori]
 gi|25808125|gb|AAN74127.1| RecA [Helicobacter pylori]
 gi|25808155|gb|AAN74142.1| RecA [Helicobacter pylori]
          Length = 212

 Score =  300 bits (768), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 138/210 (65%), Positives = 176/210 (83%), Gaps = 1/210 (0%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+D
Sbjct: 2   EKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFID 61

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AE
Sbjct: 62  AEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAE 121

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGN 221
           I+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGN
Sbjct: 122 IDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGN 181

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ALKFY+SVR+DIRR+ ++K  +   GN+ +
Sbjct: 182 ALKFYASVRIDIRRIAALKQNEQHIGNRAK 211


>gi|213012564|gb|ACJ38848.1| recombination-repair protein [Vibrio mediterranei]
          Length = 192

 Score =  300 bits (768), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 137/191 (71%), Positives = 168/191 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAF+DAEHALD IYA+KLGVD+ +LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPIYAKKLGVDIDSLLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            + INQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVK
Sbjct: 121 CILINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVE 267
           NK+A+PFKQ E
Sbjct: 181 NKIAAPFKQAE 191


>gi|171986643|gb|ACB59311.1| RecA [Rhizobium sp. SL-1]
          Length = 177

 Score =  300 bits (768), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 145/178 (81%), Positives = 165/178 (92%), Gaps = 1/178 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LGS  +I E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL 
Sbjct: 1   FGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAV
Sbjct: 60  TIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS C+++FINQ+R
Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCMVIFINQIR 177


>gi|115498185|gb|ABI98672.1| RecA [Mesorhizobium sp. CCBAU 13090]
          Length = 183

 Score =  300 bits (768), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 142/184 (77%), Positives = 168/184 (91%), Gaps = 1/184 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALH
Sbjct: 1   FGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+
Sbjct: 60  TVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTPRAEIEG+MG+S PG+QARLMSQALRKLT+SISRS  +++FINQ+RMK
Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSPPGLQARLMSQALRKLTASISRSNTMVIFINQIRMK 179

Query: 207 IGVM 210
           IGVM
Sbjct: 180 IGVM 183


>gi|89143237|emb|CAJ57513.1| recombinase A [Microbacterium aurum]
          Length = 203

 Score =  300 bits (768), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 143/200 (71%), Positives = 167/200 (83%)

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL LH IA  Q+ GG  AFVDAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI 
Sbjct: 1   SGKTTLTLHAIANVQRAGGIAAFVDAEHALDPDYAQKLGVDIDQLLVSQPDTGEQALEIA 60

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           DMLVRSGA+D++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  ++++   +
Sbjct: 61  DMLVRSGAIDLVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTM 120

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           +FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKN
Sbjct: 121 IFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKN 180

Query: 258 KMASPFKQVEFDIMYGEGIS 277
           KMA PFKQ EFDI+YG GIS
Sbjct: 181 KMAPPFKQAEFDILYGVGIS 200


>gi|117675789|emb|CAL69165.1| recombinase A [Curtobacterium flaccumfaciens pv. poinsettiae]
          Length = 214

 Score =  300 bits (768), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 144/214 (67%), Positives = 173/214 (80%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL +H IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDT EQALEI DMLV
Sbjct: 1   TLTIHAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTAEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG++D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL   +++++  ++FIN
Sbjct: 61  RSGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGGLNQTQTTMIFIN 120

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+R KIGV FGSPETT+GG ALKFY+SVRLDIRR+ ++K      GN+TRVKVVKNKMA 
Sbjct: 121 QLREKIGVFFGSPETTSGGKALKFYASVRLDIRRIETLKSGTDAVGNRTRVKVVKNKMAP 180

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           PFKQ EFDI+YG GIS  G L+D GV   IV KS
Sbjct: 181 PFKQAEFDILYGVGISREGSLLDFGVDHGIVKKS 214


>gi|89145044|emb|CAJ57530.1| recombinase A [Microbacterium resistens]
          Length = 207

 Score =  300 bits (768), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 145/205 (70%), Positives = 168/205 (81%)

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           Q+ GG  AFVDAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DML+RSGA+D++VI
Sbjct: 3   QRAGGIAAFVDAEHALDPEYAKKLGVDIDQLLVSQPDTGEQALEIADMLIRSGAIDLVVI 62

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  ++++K   +FINQ+R KIGV F
Sbjct: 63  DSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTKTTAIFINQLREKIGVFF 122

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           GSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA PFKQ EFDI+
Sbjct: 123 GSPETTAGGKALKFYASVRLDIRRIETLKDGSEAVGNRTRVKVVKNKMAPPFKQAEFDIL 182

Query: 272 YGEGISFFGELIDLGVKASIVDKSG 296
           YG GIS  G LID GV   IV KSG
Sbjct: 183 YGTGISREGSLIDFGVDHGIVKKSG 207


>gi|257650090|emb|CAX48564.1| recA protein [Aeromonas piscicola]
 gi|257650092|emb|CAX48565.1| recA protein [Aeromonas piscicola]
 gi|257650094|emb|CAX48566.1| recA protein [Aeromonas piscicola]
 gi|257650096|emb|CAX48567.1| recA protein [Aeromonas piscicola]
 gi|289172334|emb|CAX48568.1| recA protein [Aeromonas sp. AH-3]
 gi|289172378|emb|CAX48596.1| recA protein [Aeromonas popoffii]
 gi|289172382|emb|CAX48598.1| recA protein [Aeromonas bestiarum]
          Length = 186

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 141/185 (76%), Positives = 164/185 (88%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L  IA++QK G  CAF+DAE
Sbjct: 2   IEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKVCAFIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE
Sbjct: 62  HALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNALK
Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181

Query: 225 FYSSV 229
           FY+SV
Sbjct: 182 FYASV 186


>gi|323652538|gb|ADX98520.1| recombinase A [Burkholderia cepacia ATCC 25416]
          Length = 183

 Score =  300 bits (767), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 142/183 (77%), Positives = 165/183 (90%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AE
Sbjct: 61  AEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           IEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNA
Sbjct: 121 IEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNA 180

Query: 223 LKF 225
           LKF
Sbjct: 181 LKF 183


>gi|213012576|gb|ACJ38854.1| recombination-repair protein [Vibrio sp. R-729]
          Length = 197

 Score =  300 bits (767), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 136/197 (69%), Positives = 170/197 (86%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMYG 273
           NK+A+PFK+     MYG
Sbjct: 181 NKIAAPFKEATRKFMYG 197


>gi|6694831|gb|AAF25416.1|AF214769_1 RecA protein [Arthrobacter sp. 'SMCC G986']
          Length = 204

 Score =  300 bits (767), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 141/204 (69%), Positives = 170/204 (83%)

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD   LL+SQPDTGE
Sbjct: 1   IYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPEYAAKLGVDTDALLVSQPDTGE 60

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DMLV SG++DI+VIDSVAAL PRAEIEGDMG+S  G+QARLMSQALRK+T  +S
Sbjct: 61  QALEIMDMLVGSGSLDIVVIDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKITGRLS 120

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++K   +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+     GN+T+
Sbjct: 121 QTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIQTLKEGADSVGNRTK 180

Query: 252 VKVVKNKMASPFKQVEFDIMYGEG 275
            K+VKNKMA PFK  EFDI+YG+G
Sbjct: 181 AKIVKNKMAPPFKIAEFDIIYGQG 204


>gi|162568952|gb|ABY19402.1| RecA [Sinorhizobium meliloti]
          Length = 180

 Score =  300 bits (767), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 148/180 (82%), Positives = 167/180 (92%), Gaps = 1/180 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIY
Sbjct: 1   KALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQA
Sbjct: 60  GPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S
Sbjct: 120 LEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 179


>gi|118767323|gb|ABL11497.1| RecA [Rhizobium sp. PEPSM15]
          Length = 180

 Score =  300 bits (767), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 147/180 (81%), Positives = 165/180 (91%), Gaps = 1/180 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
            EAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSLGLDIALGIGG PKGRI+EIYGP
Sbjct: 2   FEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGP 60

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL TIA+SQK GG CA VDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 61  ESSGKTTLALQTIAESQKKGGICAXVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALE 120

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           ITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C
Sbjct: 121 ITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNC 180


>gi|112791508|gb|ABI22024.1| recombinase A [Pectobacterium atrosepticum]
 gi|112791512|gb|ABI22026.1| recombinase A [Pectobacterium carotovorum]
 gi|112791516|gb|ABI22028.1| recombinase A [Pectobacterium betavasculorum]
 gi|239586339|gb|ACR83544.1| recombinase A [Pectobacterium carotovorum]
          Length = 196

 Score =  299 bits (766), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 137/196 (69%), Positives = 170/196 (86%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FI
Sbjct: 61  TRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF I+YGEGI
Sbjct: 181 APFKQAEFQILYGEGI 196


>gi|30961731|gb|AAP39984.1| RecA [Helicobacter acinonychis]
          Length = 216

 Score =  299 bits (766), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 138/203 (67%), Positives = 173/203 (85%), Gaps = 1/203 (0%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHAL
Sbjct: 3   ISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHAL 62

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDM
Sbjct: 63  DVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM 122

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFY 226
           G+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY
Sbjct: 123 GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFY 182

Query: 227 SSVRLDIRRVGSIKDKDSITGNQ 249
           +SVR+DIRR+ ++K  +   GN+
Sbjct: 183 ASVRIDIRRIAALKQNEQHIGNR 205


>gi|32345046|gb|AAM93533.1| RecA protein [Rickettsia montanensis]
          Length = 182

 Score =  299 bits (766), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 140/182 (76%), Positives = 164/182 (90%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALGIGG PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  Y
Sbjct: 1   SLGLDIALGIGGVPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+KLGV++  L+ISQPDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++ 
Sbjct: 61  AKKLGVNIDELIISQPDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQ 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
              QARLMSQALRKLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+
Sbjct: 121 MASQARLMSQALRKLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRI 180

Query: 232 DI 233
           DI
Sbjct: 181 DI 182


>gi|25808117|gb|AAN74123.1| RecA [Helicobacter pylori]
          Length = 212

 Score =  299 bits (766), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 138/210 (65%), Positives = 176/210 (83%), Gaps = 1/210 (0%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+D
Sbjct: 2   EKIDSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFID 61

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AE
Sbjct: 62  AEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAE 121

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGN 221
           I+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGN
Sbjct: 122 IDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGN 181

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ALKFY+SVR+DIRR+ ++K  +   GN+ +
Sbjct: 182 ALKFYASVRIDIRRIAALKQNEQHIGNRAK 211


>gi|89145183|emb|CAJ57527.1| recombinase A [Microbacterium maritypicum]
          Length = 208

 Score =  299 bits (766), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 145/208 (69%), Positives = 171/208 (82%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ GG  AF+DAEHALD  YA KLGVD+  LL+SQPDTGEQALEI DMLVRSGA+D
Sbjct: 1   IANAQRAGGIAAFIDAEHALDPDYAAKLGVDIDALLVSQPDTGEQALEIADMLVRSGAID 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  ++++   ++FINQ+R KI
Sbjct: 61  LIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLREKI 120

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GV FGSPETT GG ALKFY+SVR+DIRR+ ++KD     GN+TRVKVVKNKMA PFKQ E
Sbjct: 121 GVFFGSPETTAGGKALKFYASVRMDIRRIETLKDGTDAVGNRTRVKVVKNKMAPPFKQAE 180

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKS 295
           FDI+YG GIS  G LID GV+ +IV KS
Sbjct: 181 FDILYGVGISREGSLIDFGVEHAIVKKS 208


>gi|209413805|emb|CAP78948.1| recombinase A [Leuconostoc palmae]
          Length = 236

 Score =  299 bits (766), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 153/237 (64%), Positives = 190/237 (80%), Gaps = 2/237 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G++M LG    +   +E   SGS+ LD+ALG+GG+PKGRI+EIYGPESSGKTT+ALH +A
Sbjct: 1   GSVMVLGDNAQVQ--VETYPSGSVKLDVALGVGGYPKGRIIEIYGPESSGKTTMALHAVA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT A++DAE+ALD  YA  LGV    LL+SQPDTGEQ LEI D LV+SGAVDII
Sbjct: 59  EVQKAGGTAAYIDAENALDVKYAEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDII 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL  +++R+  I +FINQ+R KIGV
Sbjct: 119 VVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           M G+PETT GG ALKFYS++RL++R+   I+D   ITGN T+VKVVKNK+A PFKQ+
Sbjct: 179 MLGNPETTPGGRALKFYSTIRLEVRKSTQIEDGTDITGNLTKVKVVKNKVAPPFKQI 235


>gi|162945245|gb|ABY20668.1| RecA [Lactobacillus brevis]
 gi|162945247|gb|ABY20669.1| RecA [Lactobacillus brevis]
 gi|162945249|gb|ABY20670.1| RecA [Lactobacillus brevis]
 gi|162945251|gb|ABY20671.1| RecA [Lactobacillus brevis]
 gi|162945253|gb|ABY20672.1| RecA [Lactobacillus brevis]
 gi|162945255|gb|ABY20673.1| RecA [Lactobacillus brevis]
 gi|162945257|gb|ABY20674.1| RecA [Lactobacillus brevis]
 gi|162945259|gb|ABY20675.1| RecA [Lactobacillus brevis]
 gi|162945261|gb|ABY20676.1| RecA [Lactobacillus brevis]
 gi|162945263|gb|ABY20677.1| RecA [Lactobacillus brevis]
 gi|162945265|gb|ABY20678.1| RecA [Lactobacillus brevis]
          Length = 208

 Score =  299 bits (766), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 138/208 (66%), Positives = 177/208 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V SGSL LD+ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE+AL
Sbjct: 1   VPSGSLALDVALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA  LGV++ +LL+SQPDTGEQ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+M
Sbjct: 61  DPAYATALGVNIDDLLLSQPDTGEQGLQIADALISSGAIDIVVVDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G++  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+
Sbjct: 121 GDAHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           +VRL++RR   IKD   + GN+TR+KVV
Sbjct: 181 TVRLEVRRAEQIKDGTDVIGNRTRIKVV 208


>gi|118767311|gb|ABL11491.1| RecA [Rhizobium sp. PEVF08]
 gi|225008776|gb|ACN78936.1| RecA [Rhizobium sp. ARTP01]
          Length = 180

 Score =  299 bits (766), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 145/180 (80%), Positives = 168/180 (93%), Gaps = 1/180 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIY
Sbjct: 1   KALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQA
Sbjct: 60  GPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 LEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 179


>gi|25808101|gb|AAN74115.1| RecA [Helicobacter pylori]
          Length = 209

 Score =  299 bits (765), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 137/208 (65%), Positives = 175/208 (84%), Gaps = 1/208 (0%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAE
Sbjct: 1   IDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+
Sbjct: 61  HALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNAL 223
           GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNAL
Sbjct: 121 GDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           KFY+SVR+DIRR+ ++K  +   GN+ +
Sbjct: 181 KFYASVRIDIRRIAALKQNEQHIGNRAK 208


>gi|313870913|gb|ADR82346.1| DNA recombination protein RecA [Yersinia pseudotuberculosis]
 gi|313870923|gb|ADR82351.1| DNA recombination protein RecA [Yersinia pseudotuberculosis]
          Length = 194

 Score =  299 bits (765), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 136/194 (70%), Positives = 170/194 (87%)

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           CAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAAL
Sbjct: 1   CAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAAL 60

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
           TP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ+RMKIGVMFG+PETT
Sbjct: 61  TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQIRMKIGVMFGNPETT 120

Query: 218 TGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277
           TGGNALKFY+SVRLDIRR+G++K+ D + G++TRVKVVKNK+A+PFKQ EF I+YGEGI+
Sbjct: 121 TGGNALKFYASVRLDIRRIGAVKEGDVVVGSETRVKVVKNKIAAPFKQAEFQILYGEGIN 180

Query: 278 FFGELIDLGVKASI 291
             GEL+DLGVK  +
Sbjct: 181 INGELVDLGVKHKL 194


>gi|114150694|gb|ABI51993.1| recombinase A [Pseudomonas fluorescens]
          Length = 192

 Score =  299 bits (765), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 138/192 (71%), Positives = 168/192 (87%)

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IV+DSV
Sbjct: 1   GATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSV 60

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFGSP
Sbjct: 61  AALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSP 120

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           ETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+YG+
Sbjct: 121 ETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQILYGK 180

Query: 275 GISFFGELIDLG 286
           GI   GE+IDLG
Sbjct: 181 GIYLNGEMIDLG 192


>gi|25808187|gb|AAN74158.1| RecA [Helicobacter pylori]
          Length = 212

 Score =  299 bits (765), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 137/208 (65%), Positives = 175/208 (84%), Gaps = 1/208 (0%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAE
Sbjct: 4   IDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+
Sbjct: 64  HALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEID 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNAL 223
           GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNAL
Sbjct: 124 GDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNAL 183

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           KFY+SVR+DIRR+ ++K  +   GN+ +
Sbjct: 184 KFYASVRIDIRRIAALKQNEQHIGNRAK 211


>gi|213012364|gb|ACJ38748.1| recombination-repair protein [Vibrio mediterranei]
          Length = 192

 Score =  299 bits (765), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 136/192 (70%), Positives = 168/192 (87%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA +QK G TCAF+DAEHALD IYA+KLGVD+ +LL+SQPDTGEQALEI D L 
Sbjct: 1   TLTLECIAGAQKQGKTCAFIDAEHALDPIYAKKLGVDIDSLLVSQPDTGEQALEICDALA 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FIN
Sbjct: 61  RSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFIN 120

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+
Sbjct: 121 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAA 180

Query: 262 PFKQVEFDIMYG 273
           PFKQ E  I+YG
Sbjct: 181 PFKQAETQILYG 192


>gi|112791518|gb|ABI22029.1| recombinase A [Pectobacterium cacticida]
          Length = 196

 Score =  299 bits (765), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 137/196 (69%), Positives = 170/196 (86%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FI
Sbjct: 61  TRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVIGSETRVKVVKNKVA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF I+YGEGI
Sbjct: 181 APFKQAEFQILYGEGI 196


>gi|213012320|gb|ACJ38726.1| recombination-repair protein [Vibrio mediterranei]
          Length = 193

 Score =  299 bits (765), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 135/192 (70%), Positives = 167/192 (86%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L
Sbjct: 1   TTLTLECIAAAQKAGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FI
Sbjct: 61  ARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIA 180

Query: 261 SPFKQVEFDIMY 272
           +PFKQ E  I+Y
Sbjct: 181 APFKQAETQILY 192


>gi|261882237|gb|ACY05002.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  299 bits (765), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 139/202 (68%), Positives = 171/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    LVFINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ S+K  +   GN+ +
Sbjct: 181 RIDIRRIASLKQNEQHIGNRAK 202


>gi|38091042|emb|CAE52526.1| recombination protein [Lactobacillus delbrueckii subsp. indicus]
          Length = 226

 Score =  299 bits (765), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 139/228 (60%), Positives = 185/228 (81%), Gaps = 2/228 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKGA+M++G +  +   I  V SGSL LD ALG+GG+P+GRIVEIY PESSGKTT+ALH 
Sbjct: 1   GKGAVMRMGEK--VDTQISTVPSGSLALDAALGVGGYPRGRIVEIYXPESSGKTTVALHA 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           +A+ QK GGT A++DAE+A+D  YA  LGVD+  L++SQP+TGE+ L+I D L+ SGA+D
Sbjct: 59  VAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDQLILSQPNTGEEGLQIADTLISSGAID 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           I+V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+
Sbjct: 119 IVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGTIAKTKTIAIFINQIREKV 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           GVMFG+PETT GG ALKFYS++RL++RR   IK   ++ GN+ ++KVV
Sbjct: 179 GVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSTNVIGNRVKIKVV 226


>gi|207080793|gb|ACI22740.1| RecA [Rhizobium sp. J3-A127]
          Length = 177

 Score =  298 bits (764), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 143/178 (80%), Positives = 165/178 (92%), Gaps = 1/178 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG+  S+ E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL 
Sbjct: 1   FGKGSIMKLGANESVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAV
Sbjct: 60  TIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS C+++FINQ+R
Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCMVIFINQIR 177


>gi|289172380|emb|CAX48597.1| recA protein [Aeromonas popoffii]
          Length = 186

 Score =  298 bits (764), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 140/185 (75%), Positives = 164/185 (88%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L  IA++QK G  C+F+DAE
Sbjct: 2   IEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKVCSFIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE
Sbjct: 62  HALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNALK
Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181

Query: 225 FYSSV 229
           FY+SV
Sbjct: 182 FYASV 186


>gi|289172384|emb|CAX48599.1| recA protein [Aeromonas bestiarum]
 gi|289172386|emb|CAX48600.1| recA protein [Aeromonas bestiarum]
          Length = 186

 Score =  298 bits (764), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 140/185 (75%), Positives = 163/185 (88%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSL LD+ALGIG  P GRIVEIYGPESSGKTTL L  IA++QK G  CAF+DAE
Sbjct: 2   IEAISTGSLSLDVALGIGALPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKVCAFIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE
Sbjct: 62  HALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNALK
Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181

Query: 225 FYSSV 229
           FY+SV
Sbjct: 182 FYASV 186


>gi|325650660|emb|CBY89513.1| RecA protein [Rhizobium leguminosarum]
          Length = 183

 Score =  298 bits (764), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 145/182 (79%), Positives = 168/182 (92%), Gaps = 1/182 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALE ALSQI+  +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+E
Sbjct: 1   KSKALEXALSQIEXSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RS 193
           +S
Sbjct: 180 KS 181


>gi|115361702|gb|ABF67683.1| RecA [Pectobacterium atrosepticum]
          Length = 194

 Score =  298 bits (763), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 141/193 (73%), Positives = 167/193 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD
Sbjct: 1   SLGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G
Sbjct: 61  PIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+S
Sbjct: 121 DSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKD 241
           VRLDIRR G+IK+
Sbjct: 181 VRLDIRRTGAIKE 193


>gi|162945267|gb|ABY20679.1| RecA [Lactobacillus brevis DSM 20054]
          Length = 208

 Score =  298 bits (763), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 138/208 (66%), Positives = 176/208 (84%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V SGSL LD+ALG+GG+P GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE+AL
Sbjct: 1   VPSGSLALDVALGVGGYPPGRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA  LGV++ +LL+SQPDTGEQ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+M
Sbjct: 61  DPAYATALGVNIDDLLLSQPDTGEQGLQIADALISSGAIDIVVVDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G++  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+
Sbjct: 121 GDAHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           +VRL++RR   IKD   + GN+TR+KVV
Sbjct: 181 TVRLEVRRAEQIKDGTDVIGNRTRIKVV 208


>gi|89143229|emb|CAJ57509.1| recombinase A [Microbacterium aerolatum]
          Length = 204

 Score =  298 bits (763), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 142/203 (69%), Positives = 168/203 (82%)

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
           H IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DMLVRSGA
Sbjct: 1   HAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIADMLVRSGA 60

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  ++++   ++FINQ+R 
Sbjct: 61  IDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLRE 120

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGV FGSPETT GG ALKFY+SVR+DIRR+ ++KD     GN+TRVKVVKNKMA PFKQ
Sbjct: 121 KIGVFFGSPETTAGGKALKFYASVRMDIRRIETLKDGTDAVGNRTRVKVVKNKMAPPFKQ 180

Query: 266 VEFDIMYGEGISFFGELIDLGVK 288
            EFDI+YG GIS  G LID GV+
Sbjct: 181 AEFDILYGVGISREGSLIDFGVE 203


>gi|261882285|gb|ACY05026.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  298 bits (763), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 138/202 (68%), Positives = 171/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTQNLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ S+K  +   GN+ +
Sbjct: 181 RIDIRRIASLKQNEQHIGNRAK 202


>gi|261882239|gb|ACY05003.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  298 bits (763), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 137/202 (67%), Positives = 172/202 (85%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQPDTGEQALEI + ++RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPDTGEQALEILETIIRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ ++K  +   GN+ +
Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202


>gi|261882259|gb|ACY05013.1| recombinase A [Helicobacter pylori]
 gi|261882263|gb|ACY05015.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 138/202 (68%), Positives = 171/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ S+K  +   GN+ +
Sbjct: 181 RIDIRRIASLKQNEQHIGNRAK 202


>gi|297523479|emb|CBH31147.1| recombination protein A [Mesorhizobium sp. LKU6]
 gi|297523481|emb|CBH31148.1| recombination protein A [Mesorhizobium sp. LAR5]
          Length = 183

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 143/183 (78%), Positives = 167/183 (91%), Gaps = 1/183 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG+IM+LG+   I E IE V +GSLGLDIALG+GG P+GRI+EIYGPES
Sbjct: 2   AALSQIERAFGKGSIMRLGANEKIVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS  ++
Sbjct: 121 DTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTMV 180

Query: 198 VFI 200
           +FI
Sbjct: 181 IFI 183


>gi|223366151|gb|ACM88611.1| RecA [Rhizobium sp. MVP07]
          Length = 179

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 145/180 (80%), Positives = 167/180 (92%), Gaps = 1/180 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALR LT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRXLTASIS 179


>gi|9909986|emb|CAC04413.1| RecA protein [Sinorhizobium saheli]
          Length = 177

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 145/178 (81%), Positives = 166/178 (93%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGP
Sbjct: 1   LEAALSQIERSFGKGSIMKLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALQTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S
Sbjct: 120 ITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 177


>gi|315021911|gb|ADT70823.1| recombinase A [Dickeya dadantii]
 gi|316936315|gb|ADU60206.1| recombinase A [Dickeya dadantii]
          Length = 192

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 138/192 (71%), Positives = 167/192 (86%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ N
Sbjct: 1   GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDN 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQ
Sbjct: 61  LLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+
Sbjct: 121 AMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKE 180

Query: 242 KDSITGNQTRVK 253
            + + G++TRVK
Sbjct: 181 GEEVVGSETRVK 192


>gi|325512847|gb|ADZ23612.1| RecA [Sinorhizobium fredii]
          Length = 175

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 144/176 (81%), Positives = 163/176 (92%), Gaps = 1/176 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           SVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIG
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 175


>gi|162568954|gb|ABY19403.1| RecA [Sinorhizobium meliloti]
          Length = 179

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 147/179 (82%), Positives = 166/179 (92%), Gaps = 1/179 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           ALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYG
Sbjct: 1   ALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQAL
Sbjct: 60  PESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           EITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S
Sbjct: 120 EITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 178


>gi|297528253|gb|ADI46162.1| recombination protein A [Rhizobium sp. CCBAU 05003]
          Length = 180

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 142/181 (78%), Positives = 167/181 (92%), Gaps = 1/181 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LGS  ++ E IE +S+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL 
Sbjct: 1   FGKGSVMKLGSNENVVE-IETISTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAV
Sbjct: 60  TIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMK
Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMK 179

Query: 207 I 207
           I
Sbjct: 180 I 180


>gi|6694826|gb|AAF25411.1|AF214764_1 RecA protein [Arthrobacter sp. 'SMCC G963']
          Length = 203

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 140/202 (69%), Positives = 170/202 (84%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD
Sbjct: 1   LGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDAEHALDPEYAAKLGVD 60

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
              LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIEGDMG+S  G+QARL
Sbjct: 61  TDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQARL 120

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ +
Sbjct: 121 MSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQT 180

Query: 239 IKDKDSITGNQTRVKVVKNKMA 260
           +K+     GN+T+ K+VKNKMA
Sbjct: 181 LKEGADSVGNRTKAKIVKNKMA 202


>gi|25808081|gb|AAN74105.1| RecA [Helicobacter pylori]
 gi|25808091|gb|AAN74110.1| RecA [Helicobacter pylori]
 gi|25808107|gb|AAN74118.1| RecA [Helicobacter pylori]
 gi|25808147|gb|AAN74138.1| RecA [Helicobacter pylori]
 gi|25808149|gb|AAN74139.1| RecA [Helicobacter pylori]
          Length = 212

 Score =  297 bits (761), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 137/210 (65%), Positives = 175/210 (83%), Gaps = 1/210 (0%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+D
Sbjct: 2   EKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFID 61

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AE
Sbjct: 62  AEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAE 121

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGN 221
           I+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+  +GSPETTTGGN
Sbjct: 122 IDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMTGYGSPETTTGGN 181

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ALKFY+SVR+DIRR+ ++K  +   GN+ +
Sbjct: 182 ALKFYASVRIDIRRIAALKQNEQHIGNRAK 211


>gi|25808137|gb|AAN74133.1| RecA [Helicobacter pylori]
          Length = 208

 Score =  297 bits (761), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 136/207 (65%), Positives = 174/207 (84%), Gaps = 1/207 (0%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEH
Sbjct: 1   DAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+G
Sbjct: 61  ALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALK 224
           DMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALK
Sbjct: 121 DMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALK 180

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTR 251
           FY+SVR+DIRR+ ++K  +   GN+ +
Sbjct: 181 FYASVRIDIRRIAALKQNEQHIGNRAK 207


>gi|306450641|gb|ADM88573.1| RecA [Rhizobium sp. NRCPB10]
          Length = 181

 Score =  297 bits (761), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 145/180 (80%), Positives = 167/180 (92%), Gaps = 1/180 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT++
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAA 181


>gi|9909935|emb|CAC04404.1| RecA protein [Sinorhizobium fredii]
          Length = 177

 Score =  297 bits (761), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 147/178 (82%), Positives = 165/178 (92%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGP
Sbjct: 1   LEAALSQIERSFGKGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S
Sbjct: 120 ITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 177


>gi|213012406|gb|ACJ38769.1| recombination-repair protein [Vibrio sp. R-618]
 gi|213012420|gb|ACJ38776.1| recombination-repair protein [Vibrio sp. R-629]
 gi|213012452|gb|ACJ38792.1| recombination-repair protein [Vibrio campbellii]
 gi|213012482|gb|ACJ38807.1| recombination-repair protein [Vibrio sp. R-669]
 gi|213012506|gb|ACJ38819.1| recombination-repair protein [Vibrio rotiferianus]
 gi|213012536|gb|ACJ38834.1| recombination-repair protein [Vibrio sp. R-699]
          Length = 195

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 135/195 (69%), Positives = 169/195 (86%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIM 271
           NK+A+PFK+    IM
Sbjct: 181 NKIAAPFKEANTQIM 195


>gi|225008780|gb|ACN78938.1| RecA [Rhizobium sp. PETP03]
 gi|225008782|gb|ACN78939.1| RecA [Rhizobium sp. PETP06]
          Length = 179

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 144/179 (80%), Positives = 167/179 (93%), Gaps = 1/179 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           ALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYG
Sbjct: 1   ALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQAL
Sbjct: 60  PESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           EITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 EITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 178


>gi|325650680|emb|CBY89523.1| RecA protein [Rhizobium leguminosarum]
          Length = 183

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 144/178 (80%), Positives = 166/178 (93%), Gaps = 1/178 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 177


>gi|25808193|gb|AAN74161.1| RecA [Helicobacter pylori]
          Length = 212

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 137/208 (65%), Positives = 174/208 (83%), Gaps = 1/208 (0%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAE
Sbjct: 4   IDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+
Sbjct: 64  HALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEID 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNAL 223
           GDMG+   G+QARLMS ALRK+T  + +    LVFINQ+RMKIG+  +GSPETTTGGNAL
Sbjct: 124 GDMGDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMTGYGSPETTTGGNAL 183

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           KFY+SVR+DIRR+ ++K  +   GN+ +
Sbjct: 184 KFYASVRIDIRRIAALKQNEQHIGNRAK 211


>gi|297523471|emb|CBH31143.1| recombination protein A [Mesorhizobium sp. LBER1]
          Length = 183

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 141/184 (76%), Positives = 168/184 (91%), Gaps = 1/184 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           +AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPE
Sbjct: 1   DAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS  +
Sbjct: 120 CDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTM 179

Query: 197 LVFI 200
           ++FI
Sbjct: 180 VIFI 183


>gi|112791548|gb|ABI22044.1| recombinase A [Erwinia rhapontici]
          Length = 194

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 136/194 (70%), Positives = 168/194 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L R
Sbjct: 1   LTLQVIASAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ
Sbjct: 61  SGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNSGTLLIFINQ 120

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A+P
Sbjct: 121 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSETRVKVVKNKIAAP 180

Query: 263 FKQVEFDIMYGEGI 276
           FKQ EF I+YGEGI
Sbjct: 181 FKQAEFQILYGEGI 194


>gi|9909937|emb|CAC04408.1| RecA protein [Sinorhizobium medicae]
          Length = 177

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 146/178 (82%), Positives = 165/178 (92%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGP
Sbjct: 1   LEAALSQIERAFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S
Sbjct: 120 ITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 177


>gi|32345040|gb|AAM93530.1| RecA protein [Rickettsia slovaca]
          Length = 182

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 139/182 (76%), Positives = 163/182 (89%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALGIGG PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  Y
Sbjct: 1   SLGLDIALGIGGVPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+KLGV++  L+ISQPDTGEQALEI D L+RS  +D+I+IDSVAAL P++EIEG+MG++ 
Sbjct: 61  AKKLGVNIDELIISQPDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMGDAQ 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
              QARLMSQALRKLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+
Sbjct: 121 MASQARLMSQALRKLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRI 180

Query: 232 DI 233
           DI
Sbjct: 181 DI 182


>gi|106647421|gb|ABF82349.1| recombinase A [Cupriavidus sp. amp45]
 gi|106647423|gb|ABF82350.1| recombinase A [Cupriavidus sp. cmp29]
 gi|106647425|gb|ABF82351.1| recombinase A [Cupriavidus sp. amp6]
 gi|106647431|gb|ABF82354.1| recombinase A [Cupriavidus sp. amp18]
          Length = 176

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 138/176 (78%), Positives = 161/176 (91%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           LGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGTCAF+DAEHALD  YA
Sbjct: 1   LGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVSYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            KLGV++ +LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLP
Sbjct: 61  GKLGVNVGDLLISQPDTGEQALEITDALVRSGSIDLIVIDSVAALVPKAEIEGEMGDSLP 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           G+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+S
Sbjct: 121 GLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYAS 176


>gi|106647409|gb|ABF82343.1| recombinase A [Cupriavidus sp. MApud8.1]
 gi|106647411|gb|ABF82344.1| recombinase A [Cupriavidus sp. Tpud27.6]
 gi|106647413|gb|ABF82345.1| recombinase A [Cupriavidus sp. Tpig.6a]
 gi|106647415|gb|ABF82346.1| recombinase A [Cupriavidus sp. MApud10.1]
 gi|106647433|gb|ABF82355.1| recombinase A [Cupriavidus taiwanensis]
 gi|325974140|emb|CBM42968.1| recombinase A [Cupriavidus taiwanensis]
 gi|325974142|emb|CBM42969.1| recombinase A [Cupriavidus taiwanensis]
 gi|325974144|emb|CBM42970.1| recombinase A [Cupriavidus taiwanensis]
 gi|325974146|emb|CBM42971.1| recombinase A [Cupriavidus taiwanensis]
 gi|325974148|emb|CBM42972.1| recombinase A [Cupriavidus taiwanensis]
          Length = 176

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 137/176 (77%), Positives = 161/176 (91%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           LGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGTCAF+DAEHALD  YA
Sbjct: 1   LGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVNYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            KLGV++ +LLISQPDTGEQALEITD LVRSG++D+I+IDSVAAL P+AEIEG+MG+SLP
Sbjct: 61  SKLGVNVGDLLISQPDTGEQALEITDALVRSGSIDLIIIDSVAALVPKAEIEGEMGDSLP 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           G+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+S
Sbjct: 121 GLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYAS 176


>gi|261882265|gb|ACY05016.1| recombinase A [Helicobacter pylori]
 gi|261882271|gb|ACY05019.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 137/202 (67%), Positives = 171/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTQNLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ ++K  +   GN+ +
Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202


>gi|261882303|gb|ACY05035.1| recombinase A [Helicobacter pylori]
 gi|261882323|gb|ACY05045.1| recombinase A [Helicobacter pylori]
 gi|261882383|gb|ACY05075.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 137/202 (67%), Positives = 171/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ ++K  +   GN+ +
Sbjct: 181 RIDIRRIATLKQNEQHIGNRAK 202


>gi|118767319|gb|ABL11495.1| RecA [Rhizobium sp. PEPSM13]
          Length = 176

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 145/177 (81%), Positives = 165/177 (93%), Gaps = 1/177 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           ALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG PKGRI+EIYG
Sbjct: 1   ALEAALSQIERSFGKGSIMKLGSNENVIE-IETISTGSLGLDIALGVGGLPKGRIIEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQAL
Sbjct: 60  PESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           EITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 EITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 176


>gi|106647429|gb|ABF82353.1| recombinase A [Cupriavidus sp. cmp52]
          Length = 176

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 138/176 (78%), Positives = 161/176 (91%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           LGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGTCAF+DAEHALD  YA
Sbjct: 1   LGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVNYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            KLGV++ +LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLP
Sbjct: 61  GKLGVNVGDLLISQPDTGEQALEITDALVRSGSIDLIVIDSVAALVPKAEIEGEMGDSLP 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           G+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+S
Sbjct: 121 GLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYAS 176


>gi|106647417|gb|ABF82347.1| recombinase A [Cupriavidus sp. MApud3.4]
 gi|106647419|gb|ABF82348.1| recombinase A [Cupriavidus sp. cmp60]
 gi|106647427|gb|ABF82352.1| recombinase A [Cupriavidus sp. cmp2]
          Length = 176

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 138/176 (78%), Positives = 160/176 (90%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           LGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGTCAF+DAEHALD  YA
Sbjct: 1   LGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVNYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            KLGV + +LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLP
Sbjct: 61  SKLGVSVGDLLISQPDTGEQALEITDALVRSGSIDLIVIDSVAALVPKAEIEGEMGDSLP 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           G+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+S
Sbjct: 121 GLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYAS 176


>gi|315518967|dbj|BAJ51857.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315518969|dbj|BAJ51858.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315518971|dbj|BAJ51859.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315518973|dbj|BAJ51860.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315518975|dbj|BAJ51861.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315518977|dbj|BAJ51862.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315518979|dbj|BAJ51863.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315518981|dbj|BAJ51864.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519007|dbj|BAJ51855.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519009|dbj|BAJ51854.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519021|dbj|BAJ51848.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519023|dbj|BAJ51847.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519025|dbj|BAJ51846.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519046|dbj|BAJ51865.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
          Length = 177

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 147/178 (82%), Positives = 165/178 (92%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGP
Sbjct: 1   LEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S
Sbjct: 120 ITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 177


>gi|261882231|gb|ACY04999.1| recombinase A [Helicobacter pylori]
 gi|261882235|gb|ACY05001.1| recombinase A [Helicobacter pylori]
 gi|261882247|gb|ACY05007.1| recombinase A [Helicobacter pylori]
 gi|261882267|gb|ACY05017.1| recombinase A [Helicobacter pylori]
 gi|261882269|gb|ACY05018.1| recombinase A [Helicobacter pylori]
 gi|261882275|gb|ACY05021.1| recombinase A [Helicobacter pylori]
 gi|261882287|gb|ACY05027.1| recombinase A [Helicobacter pylori]
 gi|261882291|gb|ACY05029.1| recombinase A [Helicobacter pylori]
 gi|261882301|gb|ACY05034.1| recombinase A [Helicobacter pylori]
 gi|261882305|gb|ACY05036.1| recombinase A [Helicobacter pylori]
 gi|261882307|gb|ACY05037.1| recombinase A [Helicobacter pylori]
 gi|261882309|gb|ACY05038.1| recombinase A [Helicobacter pylori]
 gi|261882311|gb|ACY05039.1| recombinase A [Helicobacter pylori]
 gi|261882313|gb|ACY05040.1| recombinase A [Helicobacter pylori]
 gi|261882315|gb|ACY05041.1| recombinase A [Helicobacter pylori]
 gi|261882317|gb|ACY05042.1| recombinase A [Helicobacter pylori]
 gi|261882319|gb|ACY05043.1| recombinase A [Helicobacter pylori]
 gi|261882325|gb|ACY05046.1| recombinase A [Helicobacter pylori]
 gi|261882327|gb|ACY05047.1| recombinase A [Helicobacter pylori]
 gi|261882329|gb|ACY05048.1| recombinase A [Helicobacter pylori]
 gi|261882331|gb|ACY05049.1| recombinase A [Helicobacter pylori]
 gi|261882333|gb|ACY05050.1| recombinase A [Helicobacter pylori]
 gi|261882337|gb|ACY05052.1| recombinase A [Helicobacter pylori]
 gi|261882339|gb|ACY05053.1| recombinase A [Helicobacter pylori]
 gi|261882341|gb|ACY05054.1| recombinase A [Helicobacter pylori]
 gi|261882343|gb|ACY05055.1| recombinase A [Helicobacter pylori]
 gi|261882345|gb|ACY05056.1| recombinase A [Helicobacter pylori]
 gi|261882347|gb|ACY05057.1| recombinase A [Helicobacter pylori]
 gi|261882351|gb|ACY05059.1| recombinase A [Helicobacter pylori]
 gi|261882353|gb|ACY05060.1| recombinase A [Helicobacter pylori]
 gi|261882355|gb|ACY05061.1| recombinase A [Helicobacter pylori]
 gi|261882357|gb|ACY05062.1| recombinase A [Helicobacter pylori]
 gi|261882361|gb|ACY05064.1| recombinase A [Helicobacter pylori]
 gi|261882363|gb|ACY05065.1| recombinase A [Helicobacter pylori]
 gi|261882365|gb|ACY05066.1| recombinase A [Helicobacter pylori]
 gi|261882371|gb|ACY05069.1| recombinase A [Helicobacter pylori]
 gi|261882373|gb|ACY05070.1| recombinase A [Helicobacter pylori]
 gi|261882375|gb|ACY05071.1| recombinase A [Helicobacter pylori]
 gi|261882377|gb|ACY05072.1| recombinase A [Helicobacter pylori]
 gi|261882379|gb|ACY05073.1| recombinase A [Helicobacter pylori]
 gi|261882381|gb|ACY05074.1| recombinase A [Helicobacter pylori]
 gi|261882385|gb|ACY05076.1| recombinase A [Helicobacter pylori]
 gi|261882387|gb|ACY05077.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 137/202 (67%), Positives = 171/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ ++K  +   GN+ +
Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202


>gi|162568950|gb|ABY19401.1| RecA [Sinorhizobium medicae]
          Length = 178

 Score =  296 bits (759), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 146/179 (81%), Positives = 165/179 (92%), Gaps = 1/179 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           ALEAAL QI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYG
Sbjct: 1   ALEAALPQIERAFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQAL
Sbjct: 60  PESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           EITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S
Sbjct: 120 EITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 178


>gi|25808127|gb|AAN74128.1| RecA [Helicobacter pylori]
          Length = 210

 Score =  296 bits (759), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 136/208 (65%), Positives = 174/208 (83%), Gaps = 1/208 (0%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAE
Sbjct: 2   IDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+
Sbjct: 62  HALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEID 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNAL 223
           GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+  +GSPETTTGGNAL
Sbjct: 122 GDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMTGYGSPETTTGGNAL 181

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           KFY+SVR+DIRR+ ++K  +   GN+ +
Sbjct: 182 KFYASVRIDIRRIAALKQNEQHIGNRAK 209


>gi|157382975|gb|ABV48916.1| recombinase A [Rhizobium sp. BICC 651R]
          Length = 194

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 146/180 (81%), Positives = 166/180 (92%), Gaps = 1/180 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 8   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 66

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDT
Sbjct: 67  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDT 126

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 127 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 186


>gi|297528247|gb|ADI46159.1| recombination protein A [Rhizobium sp. CCBAU 03068]
          Length = 180

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 147/176 (83%), Positives = 163/176 (92%), Gaps = 1/176 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  +I E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 6   VDKSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRI 64

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 65  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 124

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           GEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 125 GEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 180


>gi|198417853|gb|ACH87969.1| RecA protein [Pseudomonas chlororaphis]
 gi|198417900|gb|ACH87972.1| RecA protein [Pseudomonas chlororaphis]
          Length = 191

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 137/191 (71%), Positives = 167/191 (87%)

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IVIDSV
Sbjct: 1   GATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVIDSV 60

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFGSP
Sbjct: 61  AALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSP 120

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           ETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVK+VKNK+A PF+Q EF I+YG+
Sbjct: 121 ETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKIVKNKVAPPFRQAEFQILYGK 180

Query: 275 GISFFGELIDL 285
           GI   GE+IDL
Sbjct: 181 GIYLNGEIIDL 191


>gi|112791564|gb|ABI22052.1| recombinase A [Hafnia alvei]
          Length = 196

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 136/196 (69%), Positives = 168/196 (85%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TT  L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTXTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FI
Sbjct: 61  TRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDVVVGSETRVKVVKNKIA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF IMY +GI
Sbjct: 181 APFKQAEFQIMYAKGI 196


>gi|25808135|gb|AAN74132.1| RecA [Helicobacter pylori]
          Length = 209

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 136/208 (65%), Positives = 174/208 (83%), Gaps = 1/208 (0%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAE
Sbjct: 1   IDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+
Sbjct: 61  HALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNAL 223
           GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+  +GSPETTTGGNAL
Sbjct: 121 GDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMTGYGSPETTTGGNAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           KFY+SVR+DIRR+ ++K  +   GN+ +
Sbjct: 181 KFYASVRIDIRRIAALKQNEQHIGNRAK 208


>gi|83308050|emb|CAJ13510.1| RecA protein [Mesorhizobium thiogangeticum]
          Length = 181

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 142/182 (78%), Positives = 167/182 (91%), Gaps = 1/182 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKAL+AALSQI+R +GKG+IM+LG    + E I  VS+GSLGLDIALG+GG P+GRI+E
Sbjct: 1   KSKALDAALSQIERAFGKGSIMRLGQNEQVVE-IGTVSTGSLGLDIALGVGGLPRGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  VYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG++LPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDALPGLQARLMSQALRKLTASIS 179

Query: 192 RS 193
           RS
Sbjct: 180 RS 181


>gi|213012338|gb|ACJ38735.1| recombination-repair protein [Vibrio tubiashii]
          Length = 192

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 134/192 (69%), Positives = 166/192 (86%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L 
Sbjct: 1   TLTLEVIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALA 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FIN
Sbjct: 61  RSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFIN 120

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+
Sbjct: 121 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAA 180

Query: 262 PFKQVEFDIMYG 273
           PFKQ E  I+Y 
Sbjct: 181 PFKQAETQILYA 192


>gi|268308923|gb|ACY95422.1| recombination protein A [Rhizobium sp. CCBAU 23084]
          Length = 181

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 147/176 (83%), Positives = 163/176 (92%), Gaps = 1/176 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  +I E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 7   VDKSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRI 65

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 66  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 125

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           GEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 126 GEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 181


>gi|297523483|emb|CBH31149.1| recombination protein A [Mesorhizobium sp. LAR8]
          Length = 182

 Score =  296 bits (758), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 142/182 (78%), Positives = 166/182 (91%), Gaps = 1/182 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG+IM+LG+   I E IE V +GSLGLDIALG+GG P+GRI+EIYGPES
Sbjct: 2   AALSQIERAFGKGSIMRLGANEKIVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS  ++
Sbjct: 121 DTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTMV 180

Query: 198 VF 199
           +F
Sbjct: 181 IF 182


>gi|117675783|emb|CAL69162.1| recombinase A [Rathayibacter iranicus]
          Length = 206

 Score =  296 bits (758), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 145/206 (70%), Positives = 171/206 (83%)

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTL LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+ +LL+SQPDTGEQALEI D
Sbjct: 1   GKTTLTLHAIANAQRNGGIAAFIDAEHALDPEYAKKLGVDIDSLLVSQPDTGEQALEIAD 60

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           MLVRSG++D++VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  ++ +   ++
Sbjct: 61  MLVRSGSIDLVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNTTNTTMI 120

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNK
Sbjct: 121 FINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNK 180

Query: 259 MASPFKQVEFDIMYGEGISFFGELID 284
           MA PFKQ EFDI+YG GIS  G LID
Sbjct: 181 MAPPFKQAEFDILYGIGISREGSLID 206


>gi|114150700|gb|ABI51996.1| recombinase A [Pseudomonas sp. PTB2093]
          Length = 190

 Score =  296 bits (758), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 137/190 (72%), Positives = 167/190 (87%)

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           CAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IV+DSVAAL
Sbjct: 1   CAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAAL 60

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
            P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFGSPETT
Sbjct: 61  VPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETT 120

Query: 218 TGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277
           TGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+YG+GI 
Sbjct: 121 TGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQILYGKGIY 180

Query: 278 FFGELIDLGV 287
             GE+IDLGV
Sbjct: 181 LNGEMIDLGV 190


>gi|9909939|emb|CAC04409.1| RecA protein [Sinorhizobium meliloti]
 gi|315518965|dbj|BAJ51856.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519011|dbj|BAJ51853.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519013|dbj|BAJ51852.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519015|dbj|BAJ51851.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519017|dbj|BAJ51850.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519019|dbj|BAJ51849.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519027|dbj|BAJ51845.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519029|dbj|BAJ51844.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519031|dbj|BAJ51843.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519033|dbj|BAJ51842.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519035|dbj|BAJ51841.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519048|dbj|BAJ51866.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519050|dbj|BAJ51867.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519052|dbj|BAJ51868.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519054|dbj|BAJ51869.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519056|dbj|BAJ51870.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519058|dbj|BAJ51871.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519060|dbj|BAJ51872.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519062|dbj|BAJ51873.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
          Length = 177

 Score =  296 bits (758), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 146/178 (82%), Positives = 165/178 (92%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGP
Sbjct: 1   LEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S
Sbjct: 120 ITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 177


>gi|289172376|emb|CAX48595.1| recA protein [Aeromonas popoffii]
          Length = 186

 Score =  296 bits (758), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 139/185 (75%), Positives = 163/185 (88%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE + +GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L  IA++QK G  C+F+DAE
Sbjct: 2   IEAIFTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKVCSFIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE
Sbjct: 62  HALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNALK
Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181

Query: 225 FYSSV 229
           FY+SV
Sbjct: 182 FYASV 186


>gi|261882227|gb|ACY04997.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  296 bits (758), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 137/202 (67%), Positives = 170/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+  +K  +   GN+ +
Sbjct: 181 RIDIRRIAGLKQNEQHIGNRAK 202


>gi|298103540|emb|CBH19581.1| recombinase A [Mesorhizobium sp. GAC133P]
          Length = 187

 Score =  296 bits (757), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 140/182 (76%), Positives = 166/182 (91%), Gaps = 1/182 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTT
Sbjct: 7   IERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTT 65

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVR
Sbjct: 66  LALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVR 125

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS  +++FINQ
Sbjct: 126 SGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFINQ 185

Query: 203 MR 204
           +R
Sbjct: 186 IR 187


>gi|193090247|gb|ACF15295.1| recombination protein A [Rhizobium sp. CCBAU 65751]
          Length = 167

 Score =  296 bits (757), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 140/166 (84%), Positives = 158/166 (95%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 2   IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE
Sbjct: 62  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 122 GEMGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 167


>gi|325650928|emb|CBY89647.1| RecA protein [Rhizobium sp. R-46234=t495]
          Length = 176

 Score =  296 bits (757), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 146/177 (82%), Positives = 164/177 (92%), Gaps = 1/177 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           QALEITD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+
Sbjct: 120 QALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTA 176


>gi|89143245|emb|CAJ57517.1| recombinase A [Microbacterium foliorum]
          Length = 197

 Score =  296 bits (757), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 140/196 (71%), Positives = 164/196 (83%)

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL LH IA +Q+ GG  AF+DAEHALD  YA KLGVD+  LL+SQPDTGEQALEI 
Sbjct: 1   SGKTTLTLHAIANAQRAGGIAAFIDAEHALDPDYAAKLGVDIDALLVSQPDTGEQALEIA 60

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  ++++   +
Sbjct: 61  DMLVRSGAIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTM 120

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           +FINQ+R KIGV FGSPETT GG ALKFY+SVR+DIRR+ ++KD     GN+TRVKVVKN
Sbjct: 121 IFINQLREKIGVFFGSPETTAGGKALKFYASVRMDIRRIETLKDGTDAVGNRTRVKVVKN 180

Query: 258 KMASPFKQVEFDIMYG 273
           KMA PFKQ EFDI+YG
Sbjct: 181 KMAPPFKQAEFDILYG 196


>gi|325651175|emb|CBY89409.1| RecA protein [Sinorhizobium meliloti]
          Length = 176

 Score =  296 bits (757), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 146/176 (82%), Positives = 163/176 (92%), Gaps = 1/176 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI
Sbjct: 2   VDKSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 61  IEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           GEQALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRK
Sbjct: 121 GEQALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRK 176


>gi|261882335|gb|ACY05051.1| recombinase A [Helicobacter pylori]
 gi|261882359|gb|ACY05063.1| recombinase A [Helicobacter pylori]
 gi|261882369|gb|ACY05068.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  296 bits (757), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 136/202 (67%), Positives = 171/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTT++LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTISLHIIAECQKNGGVCAFIDAEHALDVH 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ ++K  +   GN+ +
Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202


>gi|193090239|gb|ACF15291.1| recombination protein A [Rhizobium huautlense]
          Length = 167

 Score =  296 bits (757), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 141/166 (84%), Positives = 157/166 (94%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 2   IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE
Sbjct: 62  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+MG+SLPG+QARLMSQALRKLT+SISRS C+++FINQ+RMKIGVM
Sbjct: 122 GEMGDSLPGLQARLMSQALRKLTASISRSNCMVIFINQIRMKIGVM 167


>gi|307343153|emb|CBJ18106.1| recombinase A [Micromonospora echinaurantiaca]
          Length = 206

 Score =  296 bits (757), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 139/194 (71%), Positives = 166/194 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDALLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVRLDIRRVGSIKD 241
           SVRLD+RR+ S+KD
Sbjct: 181 SVRLDVRRIESLKD 194


>gi|9909578|emb|CAC04275.1| RecA protein [Agrobacterium rhizogenes]
          Length = 177

 Score =  295 bits (756), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 145/178 (81%), Positives = 165/178 (92%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRIVEIYGP
Sbjct: 1   LEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 ITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 177


>gi|9909927|emb|CAC04393.1| RecA protein [Rhizobium tropici]
          Length = 177

 Score =  295 bits (756), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 145/178 (81%), Positives = 165/178 (92%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI+EIYGP
Sbjct: 1   LEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 ITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 177


>gi|167462061|ref|ZP_02327150.1| recombinase A [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 230

 Score =  295 bits (756), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 144/228 (63%), Positives = 181/228 (79%), Gaps = 4/228 (1%)

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI + LVRSGAVDII+IDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+
Sbjct: 1   DTGEQALEIAEALVRSGAVDIIIIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLS 60

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLDIRRV SIK  + I G
Sbjct: 61  GAINKSKVIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDIRRVESIKQGNDIIG 120

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+TR+KVVKNK+A PFKQ + DIMYGEGIS  G L+D+  +  I++KSGAW+S+   RLG
Sbjct: 121 NRTRIKVVKNKVAPPFKQADVDIMYGEGISKEGSLVDIASEMDIINKSGAWYSYNNDRLG 180

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           QGREN+K FL+EN +I++ IE  +R+ + L        PA+  +++ D
Sbjct: 181 QGRENAKQFLKENPQISQEIEQKIREASNLTTTV----PAVTEEENED 224


>gi|25808099|gb|AAN74114.1| RecA [Helicobacter pylori]
          Length = 203

 Score =  295 bits (756), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 137/202 (67%), Positives = 170/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVY 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    LVFINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ S+K  +   GN+ +
Sbjct: 181 RIDIRRIASLKQNEQHIGNRAK 202


>gi|162568948|gb|ABY19400.1| RecA [Sinorhizobium medicae]
          Length = 176

 Score =  295 bits (756), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 145/177 (81%), Positives = 164/177 (92%), Gaps = 1/177 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           EAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPE
Sbjct: 1   EAALSQIERAFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           TD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S
Sbjct: 120 TDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 176


>gi|261882321|gb|ACY05044.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  295 bits (756), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 136/202 (67%), Positives = 171/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GS+GLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSVGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ ++K  +   GN+ +
Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202


>gi|261882257|gb|ACY05012.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  295 bits (756), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 137/202 (67%), Positives = 170/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAAL P+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALPPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ S+K  +   GN+ +
Sbjct: 181 RIDIRRIASLKQNEQHIGNRAK 202


>gi|298103538|emb|CBH19580.1| recombinase A [Mesorhizobium sp. GAC138P]
          Length = 187

 Score =  295 bits (756), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 139/182 (76%), Positives = 166/182 (91%), Gaps = 1/182 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTT
Sbjct: 7   IERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTT 65

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVR
Sbjct: 66  LALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVR 125

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS  +++FINQ
Sbjct: 126 SGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFINQ 185

Query: 203 MR 204
           +R
Sbjct: 186 IR 187


>gi|89143231|emb|CAJ57510.1| recombinase A [Microbacterium arborescens]
          Length = 203

 Score =  295 bits (756), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 141/203 (69%), Positives = 167/203 (82%)

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTL LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DM
Sbjct: 1   KTTLTLHAIANAQRAGGIAAFIDAEHALDPSYAQKLGVDIDALLVSQPDTGEQALEIADM 60

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           L+RSGA+D++VIDSVAAL P AEI+G+MG+S  G+QARLMSQALRKLT  ++++K   +F
Sbjct: 61  LIRSGAIDLVVIDSVAALVPEAEIKGEMGDSHVGLQARLMSQALRKLTGGLNQTKTTAIF 120

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           INQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKM
Sbjct: 121 INQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKM 180

Query: 260 ASPFKQVEFDIMYGEGISFFGEL 282
           A PFKQ EFDI+YG GIS  G L
Sbjct: 181 APPFKQAEFDILYGVGISREGSL 203


>gi|112791514|gb|ABI22027.1| recombinase A [Pectobacterium carotovorum subsp. odoriferum]
          Length = 194

 Score =  295 bits (756), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 135/194 (69%), Positives = 168/194 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L R
Sbjct: 1   LTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ
Sbjct: 61  SGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQ 120

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+P
Sbjct: 121 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAP 180

Query: 263 FKQVEFDIMYGEGI 276
           FKQ EF I+YGEGI
Sbjct: 181 FKQAEFQILYGEGI 194


>gi|9909931|emb|CAC04390.1| RecA protein [Rhizobium leguminosarum]
 gi|45825394|gb|AAS77546.1| RecA protein [Rhizobium leguminosarum]
          Length = 177

 Score =  295 bits (756), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 143/178 (80%), Positives = 166/178 (93%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGP
Sbjct: 1   LEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 ITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 177


>gi|289172338|emb|CAX48571.1| recA protein [Aeromonas bivalvium]
          Length = 186

 Score =  295 bits (755), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 139/185 (75%), Positives = 164/185 (88%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSL LD+ALGIGG P GR+VEIYGPESSGKTTL L  IA++Q+ G T AFVDAE
Sbjct: 2   IEAISTGSLSLDVALGIGGLPCGRVVEIYGPESSGKTTLTLQVIAEAQRKGKTFAFVDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE
Sbjct: 62  HALDPVYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNALK
Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181

Query: 225 FYSSV 229
           FY+SV
Sbjct: 182 FYASV 186


>gi|6694827|gb|AAF25412.1|AF214765_1 RecA protein [Arthrobacter sp. 'SMCC G966']
          Length = 203

 Score =  295 bits (755), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 139/203 (68%), Positives = 169/203 (83%)

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD   LL+SQPD
Sbjct: 1   VVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDAEHALDPEYAAKLGVDTDALLVSQPD 60

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DMLV SG++D+IVIDSVAAL PRAEIEGDMG+S  G+QARLMSQALRK+T 
Sbjct: 61  TGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKITG 120

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ ++K+     GN
Sbjct: 121 RLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQTLKEGADSVGN 180

Query: 249 QTRVKVVKNKMASPFKQVEFDIM 271
           +T+ K+VKNKMA PFK  EFDI+
Sbjct: 181 RTKAKIVKNKMAPPFKVAEFDII 203


>gi|114150686|gb|ABI51989.1| recombinase A [Pseudomonas sp. PTB2016]
          Length = 190

 Score =  295 bits (755), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 136/190 (71%), Positives = 166/190 (87%)

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IV+DSV
Sbjct: 1   GATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSV 60

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFGSP
Sbjct: 61  AALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSP 120

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           ETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+YG+
Sbjct: 121 ETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQILYGK 180

Query: 275 GISFFGELID 284
           GI   GE+ID
Sbjct: 181 GIYLNGEMID 190


>gi|261882253|gb|ACY05010.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  295 bits (755), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 136/202 (67%), Positives = 170/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG C F+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCTFIDAEHALDVH 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ ++K  +   GN+ +
Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202


>gi|282952572|emb|CBI75463.1| DNA repair protein RecA [Pseudomonas arsenicoxydans]
          Length = 200

 Score =  295 bits (755), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 139/200 (69%), Positives = 169/200 (84%)

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           CAF DAEHALD  YA KL V++ +LL+SQPDTGEQALEITDMLVRS AVD+I++ S+AAL
Sbjct: 1   CAFXDAEHALDPEYAGKLXVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVYSLAAL 60

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
            P AEIEG+MG+   G+QARLMSQALRK+T  I  + C+++FINQ+RMKIGVMFGSPETT
Sbjct: 61  VPNAEIEGEMGDMHVGLQARLMSQALRKITGYIKNANCLVIFINQIRMKIGVMFGSPETT 120

Query: 218 TGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277
           TGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+ASPF+Q EF I+YG+GI 
Sbjct: 121 TGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVASPFRQAEFQILYGKGIY 180

Query: 278 FFGELIDLGVKASIVDKSGA 297
             GE+IDLGV    V+KSGA
Sbjct: 181 LNGEMIDLGVLHGFVEKSGA 200


>gi|325650622|emb|CBY89494.1| RecA protein [Rhizobium leguminosarum]
          Length = 175

 Score =  295 bits (755), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 143/176 (81%), Positives = 164/176 (93%), Gaps = 1/176 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 1   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 60  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 120 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 175


>gi|25808123|gb|AAN74126.1| RecA [Helicobacter pylori]
          Length = 208

 Score =  295 bits (755), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 135/207 (65%), Positives = 173/207 (83%), Gaps = 1/207 (0%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEH
Sbjct: 1   DAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+G
Sbjct: 61  ALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALK 224
           DMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+  +GSPETTTGGNALK
Sbjct: 121 DMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMTGYGSPETTTGGNALK 180

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTR 251
           FY+SVR+DIRR+ ++K  +   GN+ +
Sbjct: 181 FYASVRIDIRRIAALKQNEQHIGNRAK 207


>gi|9909933|emb|CAC04388.1| RecA protein [Rhizobium galegae]
          Length = 177

 Score =  295 bits (755), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 147/178 (82%), Positives = 164/178 (92%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LEAALSQI+R +GKG+IM+LGS  +I E IE VS+GSL LDIALGIGG PKGRI EIYGP
Sbjct: 1   LEAALSQIERSFGKGSIMKLGSNDNIVE-IETVSTGSLSLDIALGIGGLPKGRIFEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 ITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 177


>gi|9909929|emb|CAC04394.1| RecA protein [Rhizobium tropici]
          Length = 177

 Score =  295 bits (754), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 144/178 (80%), Positives = 165/178 (92%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI+EIYGP
Sbjct: 1   LEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 ITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 177


>gi|261882283|gb|ACY05025.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  295 bits (754), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 136/202 (67%), Positives = 170/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVY 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ S+K  +   GN+ +
Sbjct: 181 RIDIRRIASLKQNEQHIGNRAK 202


>gi|213012478|gb|ACJ38805.1| recombination-repair protein [Vibrio sp. R-667]
 gi|213012548|gb|ACJ38840.1| recombination-repair protein [Vibrio sp. R-709]
          Length = 193

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 133/189 (70%), Positives = 167/189 (88%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQ 265
           NK+A+PFK+
Sbjct: 181 NKIAAPFKE 189


>gi|213012480|gb|ACJ38806.1| recombination-repair protein [Vibrio sp. R-668]
          Length = 192

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 133/189 (70%), Positives = 167/189 (88%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQ 265
           NK+A+PFK+
Sbjct: 181 NKIAAPFKE 189


>gi|213012352|gb|ACJ38742.1| recombination-repair protein [Vibrio chagasii]
          Length = 186

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 135/186 (72%), Positives = 164/186 (88%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D
Sbjct: 1   IAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAID 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 61  VLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 120

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ E
Sbjct: 121 GVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQAE 180

Query: 268 FDIMYG 273
             I+YG
Sbjct: 181 TQILYG 186


>gi|213012354|gb|ACJ38743.1| recombination-repair protein [Vibrio chagasii]
          Length = 188

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 135/186 (72%), Positives = 164/186 (88%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D
Sbjct: 3   IAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAID 62

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 63  VLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 122

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ E
Sbjct: 123 GVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQAE 182

Query: 268 FDIMYG 273
             I+YG
Sbjct: 183 TQILYG 188


>gi|213012356|gb|ACJ38744.1| recombination-repair protein [Vibrio chagasii]
          Length = 187

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 135/186 (72%), Positives = 164/186 (88%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D
Sbjct: 2   IAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAID 61

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 62  VLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 121

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ E
Sbjct: 122 GVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQAE 181

Query: 268 FDIMYG 273
             I+YG
Sbjct: 182 TQILYG 187


>gi|261882297|gb|ACY05032.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  294 bits (753), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 136/202 (67%), Positives = 170/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+  +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMTGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ ++K  +   GN+ +
Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202


>gi|261882255|gb|ACY05011.1| recombinase A [Helicobacter pylori]
 gi|261882299|gb|ACY05033.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  294 bits (753), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 136/202 (67%), Positives = 170/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVY 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    LVFINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ ++K  +   GN+ +
Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202


>gi|223366139|gb|ACM88605.1| RecA [Rhizobium leguminosarum]
          Length = 182

 Score =  294 bits (753), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 143/179 (79%), Positives = 165/179 (92%), Gaps = 1/179 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDK K LEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 5   VDKIKXLEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 64  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+
Sbjct: 124 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTA 182


>gi|322510283|gb|ADX05527.1| recombination protein A [Sinorhizobium sp. CCBAU 05591]
          Length = 168

 Score =  294 bits (753), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 138/166 (83%), Positives = 157/166 (94%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A++QK GG CAFVDAE
Sbjct: 3   IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAEAQKKGGICAFVDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIE
Sbjct: 63  HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 123 GEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 168


>gi|261882349|gb|ACY05058.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  294 bits (753), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 136/202 (67%), Positives = 170/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GS GLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSSGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ ++K  +   GN+ +
Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202


>gi|261882225|gb|ACY04996.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  294 bits (753), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 136/202 (67%), Positives = 170/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ ++K  +   G + +
Sbjct: 181 RIDIRRIAALKQNEQHIGTRAK 202


>gi|97997|pir||PC1108 recombination protein recA - Streptococcus mutans (fragment)
          Length = 231

 Score =  294 bits (753), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 141/231 (61%), Positives = 180/231 (77%), Gaps = 4/231 (1%)

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTT+ALH  AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+GEQ 
Sbjct: 1   GPESSGKTTVALHAAAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQG 60

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G S  G+QAR+MSQA+RKL++SI+++
Sbjct: 61  LEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGNSHVGLQARMMSQAMRKLSASINKT 120

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQ 249
           K I +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+R    IK     KDS  G +
Sbjct: 121 KTIAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRGNTQIKGTGEQKDSNIGKE 180

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           T++KVVKNK+A PFK+   +I+YGEGIS  GEL+ +     I+ K GAW++
Sbjct: 181 TKIKVVKNKVAPPFKEAFVEIIYGEGISRTGELVKIASDLGIIQKRGAWYT 231


>gi|118767329|gb|ABL11500.1| RecA [Rhizobium leguminosarum bv. trifolii]
          Length = 178

 Score =  294 bits (753), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 143/179 (79%), Positives = 165/179 (92%), Gaps = 1/179 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGP
Sbjct: 1   LEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           ITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS S 
Sbjct: 120 ITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISXSN 178


>gi|9909859|emb|CAC04375.1| RecA protein [Phyllobacterium myrsinacearum]
          Length = 177

 Score =  294 bits (753), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 143/178 (80%), Positives = 164/178 (92%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L+AALSQI+R +GKG+IM+L +   + E IE VS+GSL LDIALG+GG PKGRIVEIYGP
Sbjct: 1   LDAALSQIERAFGKGSIMRLETNEQVVE-IETVSTGSLSLDIALGVGGLPKGRIVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS
Sbjct: 120 ITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRS 177


>gi|89143247|emb|CAJ57518.1| recombinase A [Microbacterium hominis]
          Length = 206

 Score =  294 bits (753), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 141/205 (68%), Positives = 169/205 (82%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA  Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DMLVRSGA+D
Sbjct: 1   IANVQRAGGIAAFIDAEHALDPDYAQKLGVDIDQLLVSQPDTGEQALEIADMLVRSGAID 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  ++++   ++FINQ+R KI
Sbjct: 61  LVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLREKI 120

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA PFKQ E
Sbjct: 121 GVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKMAPPFKQAE 180

Query: 268 FDIMYGEGISFFGELIDLGVKASIV 292
           FDI+YG GIS  G LID GV+ ++V
Sbjct: 181 FDILYGIGISREGSLIDFGVEHALV 205


>gi|291172968|gb|ADD82751.1| recombinase A [Rhizobium sp. CCBAU 85040]
          Length = 181

 Score =  294 bits (753), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 146/176 (82%), Positives = 162/176 (92%), Gaps = 1/176 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 7   VDKSKALEAALSQIERSFGKGSIMKLGGKDSIVE-IETVSTGSLSLDIALGIGGLPKGRI 65

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 66  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 125

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           GEQALEITD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQ LRK
Sbjct: 126 GEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQGLRK 181


>gi|289172336|emb|CAX48569.1| recA protein [Aeromonas aquariorum]
          Length = 178

 Score =  294 bits (752), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 139/178 (78%), Positives = 159/178 (89%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SL LD+ALGIGG P GRIVEIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD IY
Sbjct: 1   SLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDAEHALDPIY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIEG+MG+S 
Sbjct: 61  AAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
            G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNALKFY+SV
Sbjct: 121 VGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASV 178


>gi|110558989|gb|ABG75855.1| RecA [Agrobacterium rhizogenes]
          Length = 178

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 144/178 (80%), Positives = 164/178 (92%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
            EAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRIVEIYGP
Sbjct: 2   FEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGP 60

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 61  ESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALE 120

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 121 ITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 178


>gi|251762817|gb|ACT15366.1| RecA [Rhizobium sp. LXD30]
          Length = 181

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 145/175 (82%), Positives = 162/175 (92%), Gaps = 1/175 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  +I E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 8   VDKSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRI 66

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 67  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 126

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALR
Sbjct: 127 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALR 181


>gi|213012350|gb|ACJ38741.1| recombination-repair protein [Aliivibrio fischeri]
          Length = 190

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 133/189 (70%), Positives = 165/189 (87%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSG
Sbjct: 2   LELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSG 61

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           AVD++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+R
Sbjct: 62  AVDVMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIR 121

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+KVVKNK+A+PFK
Sbjct: 122 MKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGNETRIKVVKNKIAAPFK 181

Query: 265 QVEFDIMYG 273
           Q E  IMYG
Sbjct: 182 QAETQIMYG 190


>gi|114150684|gb|ABI51988.1| recombinase A [Rahnella aquatilis]
          Length = 187

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 135/187 (72%), Positives = 165/187 (88%)

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           CAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAAL
Sbjct: 1   CAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAAL 60

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
           TP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ+RMKIGVMFG+PETT
Sbjct: 61  TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQIRMKIGVMFGNPETT 120

Query: 218 TGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277
           TGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A+PFKQ EF IMYGEGI+
Sbjct: 121 TGGNALKFYASVRLDIRRIGAIKEGDVVVGSETRVKVVKNKIAAPFKQAEFQIMYGEGIN 180

Query: 278 FFGELID 284
             GELID
Sbjct: 181 INGELID 187


>gi|261882289|gb|ACY05028.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 135/202 (66%), Positives = 170/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVY 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ ++K  +   GN+ +
Sbjct: 181 RIDIRRIATLKQNEQHIGNRAK 202


>gi|118767309|gb|ABL11490.1| RecA [Rhizobium leguminosarum bv. viciae]
          Length = 180

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 142/180 (78%), Positives = 166/180 (92%), Gaps = 1/180 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K++  EAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+E
Sbjct: 2   KARRFEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 60

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 61  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 120

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 121 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 180


>gi|261882233|gb|ACY05000.1| recombinase A [Helicobacter pylori]
 gi|261882241|gb|ACY05004.1| recombinase A [Helicobacter pylori]
 gi|261882245|gb|ACY05006.1| recombinase A [Helicobacter pylori]
 gi|261882261|gb|ACY05014.1| recombinase A [Helicobacter pylori]
 gi|261882277|gb|ACY05022.1| recombinase A [Helicobacter pylori]
 gi|261882279|gb|ACY05023.1| recombinase A [Helicobacter pylori]
 gi|261882293|gb|ACY05030.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 135/202 (66%), Positives = 170/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVY 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ ++K  +   GN+ +
Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202


>gi|225008762|gb|ACN78929.1| RecA [Rhizobium sp. HTP01]
          Length = 178

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 143/179 (79%), Positives = 165/179 (92%), Gaps = 1/179 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           ALEAAL QI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRIVEIYG
Sbjct: 1   ALEAALXQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQAL
Sbjct: 60  PESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           EITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALR LT+SIS+S
Sbjct: 120 EITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRXLTASISKS 178


>gi|213012312|gb|ACJ38722.1| recombination-repair protein [Vibrio alginolyticus]
          Length = 197

 Score =  293 bits (751), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 134/197 (68%), Positives = 168/197 (85%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G T   +DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQREGKTWCVIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMYG 273
           NK+A+PFK+    IMYG
Sbjct: 181 NKIAAPFKEANTQIMYG 197


>gi|261882367|gb|ACY05067.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  293 bits (751), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 136/202 (67%), Positives = 170/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSL LD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLRLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ ++K  +   GN+ +
Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202


>gi|9909818|emb|CAC04355.1| RecA protein [Mesorhizobium tianshanense]
          Length = 177

 Score =  293 bits (751), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 141/178 (79%), Positives = 164/178 (92%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRIVEIYGP
Sbjct: 1   LDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           I D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS
Sbjct: 120 ICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRS 177


>gi|213012488|gb|ACJ38810.1| recombination-repair protein [Vibrio sp. R-672]
          Length = 188

 Score =  293 bits (751), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 133/188 (70%), Positives = 166/188 (88%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFK 264
           NK+A+PFK
Sbjct: 181 NKIAAPFK 188


>gi|297523473|emb|CBH31144.1| recombination protein A [Mesorhizobium sp. LCA1]
          Length = 180

 Score =  293 bits (751), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 139/181 (76%), Positives = 165/181 (91%), Gaps = 1/181 (0%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           LSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSG
Sbjct: 1   LSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSG 59

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D 
Sbjct: 60  KTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDT 119

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS  +++F
Sbjct: 120 LVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTMVIF 179

Query: 200 I 200
           I
Sbjct: 180 I 180


>gi|213012570|gb|ACJ38851.1| recombination-repair protein [Vibrio tubiashii]
          Length = 188

 Score =  293 bits (750), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 132/188 (70%), Positives = 164/188 (87%)

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA
Sbjct: 1   ECIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGA 60

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RM
Sbjct: 61  IDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRM 120

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ
Sbjct: 121 KIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQ 180

Query: 266 VEFDIMYG 273
            E  I+YG
Sbjct: 181 AETQILYG 188


>gi|291246105|gb|ADD85179.1| RecA [Borrelia recurrentis]
          Length = 212

 Score =  293 bits (750), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 137/210 (65%), Positives = 178/210 (84%), Gaps = 2/210 (0%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LD A+GIGG+P+GR+VEI+GPESSGKTTL L  IA+ QKTGG  AF+DAEHALD +YAR 
Sbjct: 3   LDEAIGIGGYPRGRVVEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAEHALDPVYARA 62

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           LGV++  L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAAL P+AEI+G+MG++  G+
Sbjct: 63  LGVNINELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGL 122

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
           QARLMS+ALRK+T+ +S+S   ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R
Sbjct: 123 QARLMSKALRKITAILSKSNACIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVR 182

Query: 235 RVGSI--KDKDSITGNQTRVKVVKNKMASP 262
           +V  +     D++ GN+ RVKVVKNK+A P
Sbjct: 183 KVEQVIGSSSDNVIGNKIRVKVVKNKVAPP 212


>gi|193090215|gb|ACF15279.1| recombination protein A [Sinorhizobium sp. CCBAU 65732]
          Length = 167

 Score =  293 bits (750), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 139/166 (83%), Positives = 156/166 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAE
Sbjct: 2   IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIE
Sbjct: 62  HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 122 GEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 167


>gi|324455904|gb|ADY39244.1| recombinase A [Vibrio variabilis]
          Length = 185

 Score =  293 bits (750), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 132/185 (71%), Positives = 164/185 (88%)

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 1   AQKQGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 60

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 61  VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 120

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 121 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 180

Query: 271 MYGEG 275
           +YG+G
Sbjct: 181 LYGQG 185


>gi|213012376|gb|ACJ38754.1| recombination-repair protein [Vibrio sp. R-91]
 gi|324455906|gb|ADY39245.1| recombinase A [Vibrio sp. R-40493]
          Length = 185

 Score =  293 bits (750), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 131/185 (70%), Positives = 164/185 (88%)

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 1   AQKAGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 60

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 61  VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 120

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 121 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 180

Query: 271 MYGEG 275
           +YG+G
Sbjct: 181 LYGQG 185


>gi|9909741|emb|CAC04337.1| RecA protein [Mycoplana dimorpha]
          Length = 177

 Score =  293 bits (750), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 143/178 (80%), Positives = 164/178 (92%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LEAALSQI+R +GKG+IM+LG++ S+ E IE + +GSLGLDIALGIGG PKGRI+EIYGP
Sbjct: 1   LEAALSQIERSFGKGSIMKLGAKDSVVE-IETIPTGSLGLDIALGIGGLPKGRIIEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPD GEQALE
Sbjct: 60  ESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDNGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ITD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS
Sbjct: 120 ITDALVRSGAIDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRS 177


>gi|9909735|emb|CAC04335.1| RecA protein [Mesorhizobium ciceri]
 gi|9909737|emb|CAC04339.1| RecA protein [Mesorhizobium huakuii]
 gi|9909739|emb|CAC04341.1| RecA protein [Mesorhizobium loti]
 gi|9909820|emb|CAC04345.1| RecA protein [Mesorhizobium mediterraneum]
 gi|45825396|gb|AAS77547.1| RecA protein [Mesorhizobium sp. ICMP 11722]
 gi|45825398|gb|AAS77548.1| RecA protein [Mesorhizobium sp. ICMP 12635]
 gi|45825400|gb|AAS77549.1| RecA protein [Mesorhizobium amorphae]
 gi|45825402|gb|AAS77550.1| RecA protein [Mesorhizobium sp. ICMP 14319]
 gi|45825404|gb|AAS77551.1| RecA protein [Mesorhizobium sp. ICMP 11708]
 gi|45825406|gb|AAS77552.1| RecA protein [Mesorhizobium sp. ICMP 11719]
 gi|45825410|gb|AAS77554.1| RecA protein [Mesorhizobium sp. ICMP 11541]
 gi|45825412|gb|AAS77555.1| RecA protein [Mesorhizobium sp. ICMP 13190]
 gi|45825414|gb|AAS77556.1| RecA protein [Mesorhizobium sp. ICMP 12685]
          Length = 177

 Score =  293 bits (749), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 140/178 (78%), Positives = 164/178 (92%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGP
Sbjct: 1   LDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           I D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS
Sbjct: 120 ICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRS 177


>gi|89145171|emb|CAJ57521.1| recombinase A [Microbacterium ketosireducens]
          Length = 204

 Score =  293 bits (749), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 140/203 (68%), Positives = 168/203 (82%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA  Q+ GG  AF+DAEHALD  YA+KLGVD+ +LL+SQPDTGEQALEI DMLVRSGA+D
Sbjct: 2   IANVQRAGGIAAFIDAEHALDPDYAQKLGVDIDSLLVSQPDTGEQALEIADMLVRSGAID 61

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  ++++   ++FINQ+R KI
Sbjct: 62  LVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLREKI 121

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA PFKQ E
Sbjct: 122 GVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGSDAVGNRTRVKVVKNKMAPPFKQAE 181

Query: 268 FDIMYGEGISFFGELIDLGVKAS 290
           FDI+YG GIS  G LID GV+ +
Sbjct: 182 FDILYGVGISREGSLIDFGVEHA 204


>gi|213012368|gb|ACJ38750.1| recombination-repair protein [Vibrio sp. R-78]
          Length = 184

 Score =  293 bits (749), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 132/184 (71%), Positives = 163/184 (88%)

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+
Sbjct: 1   QKQGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVV 60

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMF
Sbjct: 61  DSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMF 120

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E  I+
Sbjct: 121 GNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQIL 180

Query: 272 YGEG 275
           YG+G
Sbjct: 181 YGQG 184


>gi|25808159|gb|AAN74144.1| RecA [Helicobacter pylori]
          Length = 200

 Score =  292 bits (748), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 135/199 (67%), Positives = 168/199 (84%), Gaps = 1/199 (0%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           GLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA+
Sbjct: 1   GLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAK 60

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
           +LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G
Sbjct: 61  RLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVG 120

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLD 232
           +QARLMS ALRK+T  + +    LVFINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+D
Sbjct: 121 LQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMMGYGSPETTTGGNALKFYASVRID 180

Query: 233 IRRVGSIKDKDSITGNQTR 251
           IRR+ ++K  +   GN+ +
Sbjct: 181 IRRIAALKQNEQHIGNRAK 199


>gi|213012314|gb|ACJ38723.1| recombination-repair protein [Vibrio alginolyticus]
          Length = 197

 Score =  292 bits (748), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 133/197 (67%), Positives = 168/197 (85%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ L  IA +Q+ G T   +DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTITLELIAAAQREGKTWCVIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMYG 273
           NK+A+PFK+    IMYG
Sbjct: 181 NKIAAPFKEANTQIMYG 197


>gi|90193551|gb|ABD92368.1| RecA [Rhizobium pisi]
          Length = 181

 Score =  292 bits (748), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 141/181 (77%), Positives = 166/181 (91%), Gaps = 1/181 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           ++  EAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EI
Sbjct: 1   ARRFEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS 
Sbjct: 120 ALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISN 179

Query: 193 S 193
           +
Sbjct: 180 A 180


>gi|9909988|emb|CAC04415.1| RecA protein [Sinorhizobium terangae]
          Length = 177

 Score =  292 bits (748), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 143/178 (80%), Positives = 163/178 (91%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGP
Sbjct: 1   LEAALSQIERSFGKGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L TIA++Q  GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLELQTIAEAQNKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S
Sbjct: 120 ITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 177


>gi|297528259|gb|ADI46165.1| recombination protein A [Rhizobium sp. CCBAU 31063]
          Length = 182

 Score =  292 bits (747), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 143/176 (81%), Positives = 162/176 (92%), Gaps = 1/176 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 8   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRI 66

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 67  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 126

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQ LRK
Sbjct: 127 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQGLRK 182


>gi|189409699|gb|ACD93566.1| homologous recombination factor [Streptococcus suis]
          Length = 243

 Score =  292 bits (747), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 139/242 (57%), Positives = 186/242 (76%), Gaps = 4/242 (1%)

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG  AF+DAEHALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSV
Sbjct: 1   GGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV 60

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +SI+++K + +FINQ+R K+GVMFG+P
Sbjct: 61  AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFGNP 120

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           ETT GG ALKFY+SVR+D+R    IK     KD   G +T+VK+VKNK+A PFK+   +I
Sbjct: 121 ETTPGGRALKFYASVRMDVRGNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEAVVEI 180

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
           MYGEGIS  GELI++G    I+ K+GAW+S+ G+++GQG EN+K FL +N  I + I+  
Sbjct: 181 MYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKIGQGSENAKKFLADNPAIFDEIDRK 240

Query: 331 LR 332
           +R
Sbjct: 241 IR 242


>gi|296785025|dbj|BAJ08209.1| recombinase A [Fructobacillus sp. F214-1]
          Length = 210

 Score =  292 bits (747), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 137/210 (65%), Positives = 172/210 (81%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E   SGS+ LD+ALG+GG+PKGRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+
Sbjct: 1   ETSPSGSVKLDVALGVGGYPKGRIIEVYGPESSGKTTIALHAVAEIQKNGGTAAYIDAEN 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA  LGV    LL+SQPDTGEQ LEI D LV+SGAVD++V+DSVAAL PR EIEG
Sbjct: 61  ALDVKYAEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDMVVVDSVAALVPRVEIEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +MG++  G+QARLMSQALRKL  +++R+  I +FINQ+R K+GVMFG+PETT GG ALKF
Sbjct: 121 EMGDAHVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPETTPGGRALKF 180

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           YS++RL++RR   IKD   +TGN T+VKVV
Sbjct: 181 YSTIRLEVRRSTQIKDGSBVTGNLTKVKVV 210


>gi|261882243|gb|ACY05005.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  292 bits (747), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 135/202 (66%), Positives = 169/202 (83%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVY 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    LVFINQ+RMKIG+  +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMTGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ ++K  +   GN+ +
Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202


>gi|112791532|gb|ABI22036.1| recombinase A [Dickeya paradisiaca]
          Length = 190

 Score =  291 bits (746), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 135/190 (71%), Positives = 165/190 (86%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FI
Sbjct: 61  ARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIKD + + G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKDGEEVIGSETRVKVVKNKVA 180

Query: 261 SPFKQVEFDI 270
           +PFKQ EF I
Sbjct: 181 APFKQAEFQI 190


>gi|213012490|gb|ACJ38811.1| recombination-repair protein [Vibrio sp. R-673]
          Length = 187

 Score =  291 bits (746), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 132/187 (70%), Positives = 165/187 (88%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPF 263
           NK+A+PF
Sbjct: 181 NKIAAPF 187


>gi|118767327|gb|ABL11499.1| RecA [Rhizobium pisi]
          Length = 179

 Score =  291 bits (746), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 141/179 (78%), Positives = 164/179 (91%), Gaps = 1/179 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
            EAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGP
Sbjct: 2   FEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGP 60

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 61  ESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALE 120

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           ITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS + 
Sbjct: 121 ITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISNAN 179


>gi|225008784|gb|ACN78940.1| RecA [Rhizobium sp. RTP05]
          Length = 175

 Score =  291 bits (746), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 142/176 (80%), Positives = 163/176 (92%), Gaps = 1/176 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LEAAL QI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRIVEIYGP
Sbjct: 1   LEAALXQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           ITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 ITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 175


>gi|307343398|emb|CBJ18140.1| recombinase A [Micromonospora sp. GUI42]
          Length = 192

 Score =  291 bits (746), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 136/192 (70%), Positives = 164/192 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHAL
Sbjct: 1   IPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVRLDIRRVGSI 239
           SVRLD+RR+ S+
Sbjct: 181 SVRLDVRRIESL 192


>gi|283945405|dbj|BAI66456.1| recombinase A [Vibrio tapetis]
          Length = 193

 Score =  291 bits (746), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 133/183 (72%), Positives = 162/183 (88%)

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VIDSV
Sbjct: 9   GKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVIDSV 68

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+P
Sbjct: 69  AALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNP 128

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           ETTTGGNALKFY+SVRLDIRR GSIKD D I GN+TR+KVVKNK+A+PFKQ E  I+YG+
Sbjct: 129 ETTTGGNALKFYASVRLDIRRTGSIKDGDEIVGNETRIKVVKNKIAAPFKQAETQILYGQ 188

Query: 275 GIS 277
           G +
Sbjct: 189 GFN 191


>gi|261882251|gb|ACY05009.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  291 bits (745), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 135/202 (66%), Positives = 168/202 (83%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFFDAEHALDVH 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +N L+SQPDTGEQALEI + + RSG +D++V+DSVAAL P+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENFLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALPPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ ++K  +   GN+ +
Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202


>gi|307343426|emb|CBJ18154.1| recombinase A [Micromonospora sp. SGA3]
          Length = 188

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 136/188 (72%), Positives = 161/188 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YAR LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYARALGVDTDALLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVRLDIRR 235
           SVRLD+RR
Sbjct: 181 SVRLDVRR 188


>gi|325650776|emb|CBY89571.1| RecA protein [Rhizobium leguminosarum]
          Length = 173

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 141/174 (81%), Positives = 162/174 (93%), Gaps = 1/174 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 173


>gi|223366149|gb|ACM88610.1| RecA [Rhizobium sp. MVP05]
          Length = 182

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 143/182 (78%), Positives = 163/182 (89%), Gaps = 1/182 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 2   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 61  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRS AVD++V+DSVAALTPRAEIEG+MG  LPG Q RLMSQ LRKL +S
Sbjct: 121 GEQALEITDTLVRSXAVDVLVVDSVAALTPRAEIEGEMGXXLPGXQPRLMSQELRKLXAS 180

Query: 190 IS 191
           IS
Sbjct: 181 IS 182


>gi|45825418|gb|AAS77558.1| RecA protein [Mesorhizobium chacoense]
          Length = 177

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 140/178 (78%), Positives = 164/178 (92%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L+AALSQI+R +GKG+IM+LG+   + E I  VS+GSLGLDIALG+GG P+GRI+EIYGP
Sbjct: 1   LDAALSQIERAFGKGSIMRLGANEQVVE-IGTVSTGSLGLDIALGVGGLPRGRIIEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           I D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS
Sbjct: 120 ICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRS 177


>gi|261882229|gb|ACY04998.1| recombinase A [Helicobacter pylori]
 gi|261882249|gb|ACY05008.1| recombinase A [Helicobacter pylori]
 gi|261882281|gb|ACY05024.1| recombinase A [Helicobacter pylori]
 gi|261882295|gb|ACY05031.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 134/202 (66%), Positives = 169/202 (83%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVY 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+  +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMTGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ ++K  +   GN+ +
Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202


>gi|289064100|gb|ADC80443.1| recombination protein A [Rhizobium sp. CCBAU 65647]
          Length = 166

 Score =  291 bits (744), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 138/163 (84%), Positives = 155/163 (95%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 4   IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE
Sbjct: 64  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           G+MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKI
Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKI 166


>gi|38091034|emb|CAE52522.1| recombination protein [Lactobacillus delbrueckii subsp.
           delbrueckii]
 gi|38091036|emb|CAE52523.1| recombination protein [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|38091038|emb|CAE52524.1| recombination protein [Lactobacillus delbrueckii subsp. lactis]
          Length = 221

 Score =  291 bits (744), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 134/222 (60%), Positives = 180/222 (81%), Gaps = 2/222 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           +M++G +  +   I  V SGSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ 
Sbjct: 1   VMRMGEK--VDTQISTVPSGSLALDAALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEV 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT A++DAE+A+D  YA  LGVD+  L++SQP+TGE+ L+I D L+ SGA+DI+V+
Sbjct: 59  QKRGGTAAYIDAENAMDPAYAEALGVDIDQLILSQPNTGEEGLQIADTLISSGAIDIVVV 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMF
Sbjct: 119 DSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGTIAKTKTIAIFINQIREKVGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
           G+PETT GG ALKFYS++RL++RR   IK   ++ GN+ ++K
Sbjct: 179 GNPETTPGGRALKFYSTIRLEVRRAEQIKQSTNVIGNRVKIK 220


>gi|298566930|gb|ADI86541.1| recombination protein A [Rhizobium etli]
          Length = 161

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 138/161 (85%), Positives = 154/161 (95%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHAL
Sbjct: 1   VSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+M
Sbjct: 61  DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIG
Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 161


>gi|299480237|gb|ADJ18744.1| recombination protein RecA [Rhizobium sp. CCBAU 65643]
          Length = 166

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 137/164 (83%), Positives = 156/164 (95%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 3   IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV+L+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE
Sbjct: 63  HALDPVYARKLGVNLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIG
Sbjct: 123 GEMGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 166


>gi|148361401|gb|ABQ59282.1| DNA recombinase [Listeria monocytogenes]
          Length = 210

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 140/210 (66%), Positives = 174/210 (82%), Gaps = 2/210 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YG
Sbjct: 3   ALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYG 60

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQAL
Sbjct: 61  PESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQAL 120

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK
Sbjct: 121 EIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSK 180

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALK 224
            I +FINQ+R K+GVMFG+PE T GG ALK
Sbjct: 181 TIAIFINQIREKVGVMFGNPEITPGGRALK 210


>gi|68637168|emb|CAF21763.1| recombinase A [Lactobacillus farciminis]
          Length = 200

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 137/197 (69%), Positives = 168/197 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  VSSGSL LD ALG+GGFP+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   ISTVSSGSLALDNALGVGGFPRGRIVEIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGV++ +LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEIE
Sbjct: 62  NAMDPAYATALGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+G+MFG+PETT GG ALK
Sbjct: 122 GEMGDSHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FYS++RL++RR   IKD
Sbjct: 182 FYSTIRLEVRRAEQIKD 198


>gi|307343436|emb|CBJ18159.1| recombinase A [Micromonospora sp. SGA21]
          Length = 190

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 134/190 (70%), Positives = 163/190 (85%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD 
Sbjct: 1   TGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVASAQRAGGIAAFIDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
            YA+ LGVD   +L+SQPDTGEQALEI DML+RSGA+D+IVIDSVAAL PRAEIEG+MG+
Sbjct: 61  EYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGAIDVIVIDSVAALVPRAEIEGEMGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           S  G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SV
Sbjct: 121 SHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASV 180

Query: 230 RLDIRRVGSI 239
           RLD+RR+ S+
Sbjct: 181 RLDVRRIESL 190


>gi|45825416|gb|AAS77557.1| RecA protein [Mesorhizobium plurifarium]
          Length = 177

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 140/178 (78%), Positives = 163/178 (91%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L+AALSQI+R +GKG+IM+LG+     E IE V +GSLGLDIALG+GG P+GRIVEIYGP
Sbjct: 1   LDAALSQIERAFGKGSIMRLGANEQAVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           I D LVRSGA+D++V+DSVAALTPRAEIEG+MG++LPG+QARLMSQALRKLT+SISRS
Sbjct: 120 ICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDALPGLQARLMSQALRKLTASISRS 177


>gi|68637422|emb|CAF21816.1| recombinase A [Carnobacterium divergens]
          Length = 200

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 137/197 (69%), Positives = 165/197 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  + SGSL LD+ALG+GGFPKGRIVE+YGPESSGKTT+ALH +A+ QK GG  AF+DAE
Sbjct: 2   ISTIPSGSLALDVALGVGGFPKGRIVEVYGPESSGKTTVALHAVAEVQKQGGIAAFIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA+ LGV++  LL+SQPDTGEQ LEI D LV SGAVDI+VIDSVAAL PRAEIE
Sbjct: 62  HALDPQYAQNLGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIVVIDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG S  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PE T GG ALK
Sbjct: 122 GEMGASHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGVMFGNPEITPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FY++VRL++RR   IK+
Sbjct: 182 FYATVRLEVRRAKQIKN 198


>gi|298566910|gb|ADI86531.1| recombination protein A [Sinorhizobium sp. CCBAU 05631]
          Length = 163

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 136/163 (83%), Positives = 155/163 (95%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A++QK GG CAFVDAEHAL
Sbjct: 1   VSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAEAQKKGGICAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M
Sbjct: 61  DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 163


>gi|170676512|gb|ACB30409.1| recombinase A [Rhizobium giardinii]
          Length = 167

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 138/163 (84%), Positives = 155/163 (95%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL
Sbjct: 5   VSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 64

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIEG+M
Sbjct: 65  DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEM 124

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 125 GDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 167


>gi|268308929|gb|ACY95425.1| recombination protein A [Rhizobium sp. CCBAU 45252]
          Length = 175

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 144/173 (83%), Positives = 160/173 (92%), Gaps = 1/173 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  +I E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 4   VDKSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 63  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           GEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQA
Sbjct: 123 GEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQA 175


>gi|158631774|gb|ABW74992.1| RecA [Mesorhizobium gobiense]
          Length = 167

 Score =  290 bits (742), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 136/166 (81%), Positives = 156/166 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAE
Sbjct: 2   IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIE
Sbjct: 62  HALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+MG+SLPG+QARLMSQALRKLT+SISRS  +++FINQ+RMKIGVM
Sbjct: 122 GEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKIGVM 167


>gi|298566906|gb|ADI86529.1| recombination protein A [Sinorhizobium fredii]
 gi|325512823|gb|ADZ23600.1| RecA [Sinorhizobium fredii]
          Length = 163

 Score =  290 bits (742), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 138/163 (84%), Positives = 154/163 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL
Sbjct: 1   VSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M
Sbjct: 61  DPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 163


>gi|68635337|emb|CAF21742.1| recombinase A [Lactobacillus agilis]
          Length = 200

 Score =  290 bits (742), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 136/197 (69%), Positives = 167/197 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  VSSGSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   ISTVSSGSLALDEALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQKNGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD  YA  LGVD+  LL+SQPDTGEQ LEI D LV SGA+DI+V+DSVAAL PRAEIE
Sbjct: 62  NALDPAYATALGVDIDQLLLSQPDTGEQGLEIADALVSSGAIDIVVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+G+MFG+PETT GG ALK
Sbjct: 122 GEMGDSHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGIMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FYS++RL++RR   IKD
Sbjct: 182 FYSTIRLEVRRAEQIKD 198


>gi|158631800|gb|ABW75005.1| RecA [Rhizobium sp. CCBAU 83517]
          Length = 172

 Score =  290 bits (742), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 136/166 (81%), Positives = 157/166 (94%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 7   IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 66

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE
Sbjct: 67  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 126

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIGVM
Sbjct: 127 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 172


>gi|299480239|gb|ADJ18745.1| recombination protein RecA [Rhizobium sp. CCBAU 65648]
          Length = 166

 Score =  290 bits (742), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 137/164 (83%), Positives = 156/164 (95%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 3   IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV+L+NLLISQPDTGEQALEITD LVRSGAVD++V++SVAALTPRAEIE
Sbjct: 63  HALDPVYARKLGVNLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVNSVAALTPRAEIE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIG
Sbjct: 123 GEMGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 166


>gi|158631792|gb|ABW75001.1| RecA [Rhizobium sp. CCBAU 83268]
 gi|158631798|gb|ABW75004.1| RecA [Rhizobium sp. CCBAU 83530]
 gi|158631806|gb|ABW75008.1| RecA [Rhizobium sp. CCBAU 83309]
          Length = 169

 Score =  290 bits (742), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 136/166 (81%), Positives = 157/166 (94%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 4   IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE
Sbjct: 64  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIGVM
Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 169


>gi|158631796|gb|ABW75003.1| RecA [Rhizobium sp. CCBAU 83489]
          Length = 171

 Score =  290 bits (742), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 136/166 (81%), Positives = 157/166 (94%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 6   IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 65

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE
Sbjct: 66  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 125

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIGVM
Sbjct: 126 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 171


>gi|213012362|gb|ACJ38747.1| recombination-repair protein [Vibrio sp. R-54]
          Length = 190

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 130/189 (68%), Positives = 164/189 (86%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSG
Sbjct: 2   LELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSG 61

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+R
Sbjct: 62  AIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIR 121

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK
Sbjct: 122 MKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFK 181

Query: 265 QVEFDIMYG 273
           +    IMYG
Sbjct: 182 EANTQIMYG 190


>gi|281414271|ref|ZP_06246013.1| protein RecA [Micrococcus luteus NCTC 2665]
          Length = 239

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 137/215 (63%), Positives = 175/215 (81%)

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           ++SQPDTGEQALEI DMLV SG +DI+VIDSVAALTPRAEIEG+MG+S  G+QARLMSQA
Sbjct: 1   MVSQPDTGEQALEIMDMLVSSGTLDIVVIDSVAALTPRAEIEGEMGDSHVGLQARLMSQA 60

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           LRK+T  + ++K   +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+ 
Sbjct: 61  LRKVTGRLHQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKEA 120

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
            +  GN+TRVK+VKNKMA PFKQ EFDI+YG GIS  G LID+GV+  IV KSGAWF++ 
Sbjct: 121 GNPVGNRTRVKIVKNKMAPPFKQAEFDILYGVGISREGGLIDMGVEEGIVKKSGAWFTYD 180

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           G +LGQG+EN++ FL++N ++A  IE  +    G+
Sbjct: 181 GDQLGQGKENARRFLKDNPDLANEIEQRILTKLGI 215


>gi|195542198|gb|ACF98309.1| RecA [Sinorhizobium meliloti]
          Length = 169

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 138/164 (84%), Positives = 154/164 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDAE
Sbjct: 6   IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAE 65

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VIDSVAAL PRAEIE
Sbjct: 66  HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVIDSVAALVPRAEIE 125

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIG
Sbjct: 126 GEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 169


>gi|158631826|gb|ABW75018.1| RecA [Sinorhizobium meliloti]
          Length = 170

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 138/164 (84%), Positives = 154/164 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDAE
Sbjct: 4   IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VIDSVAAL PRAEIE
Sbjct: 64  HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVIDSVAALVPRAEIE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIG
Sbjct: 124 GEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 167


>gi|158631818|gb|ABW75014.1| RecA [Rhizobium sp. CCBAU 83485]
          Length = 168

 Score =  290 bits (741), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 136/166 (81%), Positives = 157/166 (94%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 3   IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE
Sbjct: 63  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIGVM
Sbjct: 123 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 168


>gi|307343424|emb|CBJ18153.1| recombinase A [Micromonospora sp. SG16]
          Length = 188

 Score =  290 bits (741), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 136/188 (72%), Positives = 161/188 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDALLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVRLDIRR 235
           SVRLD+RR
Sbjct: 181 SVRLDVRR 188


>gi|297528265|gb|ADI46168.1| recombination protein A [Rhizobium sp. CCBAU 61054]
          Length = 173

 Score =  290 bits (741), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 143/172 (83%), Positives = 159/172 (92%), Gaps = 1/172 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  SI E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNESIVE-IETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQ
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQ 173


>gi|169883832|gb|ACA98012.1| recombination protein A [Sinorhizobium fredii]
          Length = 167

 Score =  290 bits (741), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 138/163 (84%), Positives = 154/163 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL
Sbjct: 5   VSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 64

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M
Sbjct: 65  DPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 124

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 125 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 167


>gi|307343400|emb|CBJ18141.1| recombinase A [Micromonospora sp. GUI43]
          Length = 190

 Score =  290 bits (741), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 136/189 (71%), Positives = 162/189 (85%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD 
Sbjct: 2   TGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDP 61

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
            YA+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+
Sbjct: 62  EYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGD 121

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           S  G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SV
Sbjct: 122 SHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASV 181

Query: 230 RLDIRRVGS 238
           RLD+RR+ S
Sbjct: 182 RLDVRRIES 190


>gi|68637159|emb|CAF21760.1| recombinase A [Lactobacillus diolivorans]
          Length = 200

 Score =  290 bits (741), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 135/197 (68%), Positives = 169/197 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  + +GSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   ISTIPTGSLALDEALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD +YA  LGV++ +LL+SQPDTGEQ L+ITD LV SGAVDI+VIDSVAAL PRAEIE
Sbjct: 62  NALDPVYATHLGVNIDDLLLSQPDTGEQGLQITDALVTSGAVDIVVIDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FY+++RL+IRR   IKD
Sbjct: 182 FYATIRLEIRRAEQIKD 198


>gi|297528273|gb|ADI46172.1| recombination protein A [Rhizobium sp. CCBAU 85049]
          Length = 172

 Score =  290 bits (741), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 143/171 (83%), Positives = 159/171 (92%), Gaps = 1/171 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  SI E IE VS+GSLGLDIALG+GG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNESIVE-IETVSTGSLGLDIALGVGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           GEQALEITD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QARLMS
Sbjct: 122 GEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMS 172


>gi|68637164|emb|CAF21762.1| recombinase A [Lactobacillus equi]
          Length = 200

 Score =  290 bits (741), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 136/197 (69%), Positives = 167/197 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  VSSGSL LD ALG+GGFP+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   ISTVSSGSLALDEALGVGGFPRGRIVEIYGPESSGKTTVALHAVAEVQKAGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD  YA  LGV++  LL+SQPDTGEQ LEI D LV SGA+DI+V+DSVAAL PRAEIE
Sbjct: 62  NALDPAYATALGVNIDELLLSQPDTGEQGLEIADALVSSGAIDIVVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+G+MFG+PETT GG ALK
Sbjct: 122 GEMGDSHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGIMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           +YS++RLD+RR   IKD
Sbjct: 182 YYSTIRLDVRRSEQIKD 198


>gi|68635382|emb|CAF21751.1| recombinase A [Lactobacillus buchneri]
 gi|68637289|emb|CAF21786.1| recombinase A [Lactobacillus parabuchneri]
          Length = 200

 Score =  290 bits (741), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 135/197 (68%), Positives = 169/197 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  + SGSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   ISTIPSGSLALDDALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD +YA  LGV++ +LL+SQPDTGEQ L+ITD LV SGA+DI+VIDSVAAL PRAEIE
Sbjct: 62  NALDPVYATHLGVNIDDLLLSQPDTGEQGLQITDALVTSGAIDIVVIDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FY+++RL+IRR   IKD
Sbjct: 182 FYATIRLEIRRAEQIKD 198


>gi|158631820|gb|ABW75015.1| RecA [Sinorhizobium sp. CCBAU 83279]
          Length = 166

 Score =  290 bits (741), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 138/163 (84%), Positives = 154/163 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL
Sbjct: 4   VSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 63

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+M
Sbjct: 64  DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEM 123

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 124 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 166


>gi|194476417|gb|ACF74773.1| RecA [Rhizobium sp. CCBAU 83479]
          Length = 169

 Score =  290 bits (741), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 135/167 (80%), Positives = 157/167 (94%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 3   IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE
Sbjct: 63  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           G+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FIN +RMKIGVM+
Sbjct: 123 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINHIRMKIGVMY 169


>gi|194476419|gb|ACF74774.1| RecA [Rhizobium multihospitium]
          Length = 165

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 136/163 (83%), Positives = 155/163 (95%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL
Sbjct: 3   VSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 62

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+M
Sbjct: 63  DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 122

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 123 GDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 165


>gi|295984326|gb|ADG63631.1| RecA [Sinorhizobium sp. CCBAU 05606]
          Length = 163

 Score =  289 bits (740), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 137/163 (84%), Positives = 154/163 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL
Sbjct: 1   VSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M
Sbjct: 61  DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 163


>gi|158631816|gb|ABW75013.1| RecA [Rhizobium sp. CCBAU 83440]
          Length = 166

 Score =  289 bits (740), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 136/166 (81%), Positives = 157/166 (94%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 1   IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE
Sbjct: 61  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIGVM
Sbjct: 121 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 166


>gi|297528245|gb|ADI46158.1| recombination protein A [Rhizobium sp. CCBAU 65810]
          Length = 172

 Score =  289 bits (740), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 143/171 (83%), Positives = 158/171 (92%), Gaps = 1/171 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  SI E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNDSIVE-IETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEGDMG+SLPG+QARLMS
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGDMGDSLPGLQARLMS 172


>gi|169883814|gb|ACA98003.1| recombination protein A [Rhizobium tropici]
          Length = 167

 Score =  289 bits (740), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 136/163 (83%), Positives = 155/163 (95%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL
Sbjct: 5   VSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 64

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+M
Sbjct: 65  DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 124

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 125 GDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 167


>gi|90193549|gb|ABD92367.1| RecA [Rhizobium lusitanum]
          Length = 173

 Score =  289 bits (740), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 142/173 (82%), Positives = 160/173 (92%), Gaps = 1/173 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 2   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 61  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           GEQALEITD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQA
Sbjct: 121 GEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQA 173


>gi|297528243|gb|ADI46157.1| recombination protein A [Rhizobium sp. CCBAU 01116]
          Length = 173

 Score =  289 bits (740), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 143/172 (83%), Positives = 159/172 (92%), Gaps = 1/172 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  +I E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQ
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQ 173


>gi|68637305|emb|CAF21790.1| recombinase A [Lactobacillus parakefiri]
          Length = 200

 Score =  289 bits (739), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 134/197 (68%), Positives = 169/197 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  + SGSL LD ALG+GG+P+GRIVE+YGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   ISTIPSGSLALDDALGVGGYPRGRIVEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD +YA  LGV++ +LL+SQPDTGEQ L+ITD LV SGA+DI+VIDSVAAL PRAEIE
Sbjct: 62  NALDPVYATHLGVNIDDLLLSQPDTGEQGLQITDALVTSGAIDIVVIDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FY+++RL+IRR   IKD
Sbjct: 182 FYATIRLEIRRAEQIKD 198


>gi|307343394|emb|CBJ18138.1| recombinase A [Micromonospora sp. GUI40]
          Length = 187

 Score =  289 bits (739), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 135/186 (72%), Positives = 161/186 (86%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH++A +Q+ GG  AF+DAEHALD 
Sbjct: 2   TGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHSVASAQRLGGIAAFIDAEHALDP 61

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
            YA+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+
Sbjct: 62  EYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGEMGD 121

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           S  G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SV
Sbjct: 122 SHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASV 181

Query: 230 RLDIRR 235
           RLD+RR
Sbjct: 182 RLDVRR 187


>gi|68637310|emb|CAF21792.1| recombinase A [Lactobacillus perolens]
          Length = 200

 Score =  289 bits (739), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 134/197 (68%), Positives = 169/197 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  + SGSL LD ALG+GG+P+GRIVE+YGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   ISTIPSGSLALDDALGVGGYPRGRIVEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD +YA  LGV++ +LL+SQPDTGEQ LEITD LV SGA+DI+VIDSVAAL PRAEIE
Sbjct: 62  NALDPVYATHLGVNIDDLLLSQPDTGEQGLEITDALVTSGAIDIVVIDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTINKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FY+++RL+IRR   IKD
Sbjct: 182 FYATIRLEIRRAEQIKD 198


>gi|68637241|emb|CAF21776.1| recombinase A [Lactobacillus kimchii]
          Length = 200

 Score =  289 bits (739), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 135/197 (68%), Positives = 169/197 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  VS+GSL LD ALG+GGFP+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   ISTVSTGSLALDNALGVGGFPRGRIVEIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA+ LGV++ +LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEIE
Sbjct: 62  NAMDPEYAKALGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+G+MFG+PETT GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FYS++RL++RR   IKD
Sbjct: 182 FYSTIRLEVRRAEQIKD 198


>gi|213012326|gb|ACJ38729.1| recombination-repair protein [Photobacterium sp. R-16]
          Length = 183

 Score =  289 bits (739), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 134/183 (73%), Positives = 161/183 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLEAIACAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVK 180

Query: 257 NKM 259
           NK+
Sbjct: 181 NKI 183


>gi|298566902|gb|ADI86527.1| recombination protein A [Sinorhizobium sp. CCBAU 05617]
          Length = 163

 Score =  289 bits (739), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 136/163 (83%), Positives = 154/163 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL
Sbjct: 1   VSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M
Sbjct: 61  DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 163


>gi|298566896|gb|ADI86524.1| recombination protein A [Sinorhizobium fredii]
          Length = 163

 Score =  289 bits (739), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 136/163 (83%), Positives = 154/163 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALGIGG PKGR++EIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL
Sbjct: 1   VSTGSLGLDIALGIGGLPKGRVIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M
Sbjct: 61  DPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 163


>gi|307343428|emb|CBJ18155.1| recombinase A [Micromonospora sp. SGA5]
          Length = 187

 Score =  289 bits (739), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 134/187 (71%), Positives = 161/187 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   LL+SQPDTGEQALEITDMLVRSGA+DI+VIDSVAAL PRAEIEG+M
Sbjct: 61  DPDYAKALGVDTDALLVSQPDTGEQALEITDMLVRSGAIDIVVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVRLDIR 234
           SVRLD+R
Sbjct: 181 SVRLDVR 187


>gi|29652124|gb|AAO87723.1| RecA [Listeria monocytogenes]
          Length = 208

 Score =  289 bits (739), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 139/209 (66%), Positives = 173/209 (82%), Gaps = 2/209 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YG
Sbjct: 2   ALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQAL
Sbjct: 60  PESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK
Sbjct: 120 EIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSK 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNAL 223
            I +FINQ+R K+GVMFG+PE T GG AL
Sbjct: 180 TIAIFINQIREKVGVMFGNPEITPGGRAL 208


>gi|213012442|gb|ACJ38787.1| recombination-repair protein [Vibrio sp. R-642]
 gi|213012546|gb|ACJ38839.1| recombination-repair protein [Vibrio alginolyticus]
          Length = 186

 Score =  289 bits (739), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 131/186 (70%), Positives = 164/186 (88%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASP 262
           NK+A+P
Sbjct: 181 NKIAAP 186


>gi|322510281|gb|ADX05526.1| recombination protein A [Sinorhizobium sp. CCBAU 05637]
          Length = 166

 Score =  288 bits (738), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 135/163 (82%), Positives = 154/163 (94%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A++QK GG CAFVDAE
Sbjct: 4   IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAEAQKKGGICAFVDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIE
Sbjct: 64  HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           G+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKI
Sbjct: 124 GEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKI 166


>gi|307343143|emb|CBJ18101.1| recombinase A [Micromonospora chokoriensis]
          Length = 189

 Score =  288 bits (738), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 133/189 (70%), Positives = 162/189 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG P+GR++E+YGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGVGGLPRGRVIEVYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
            G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRL
Sbjct: 121 VGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRL 180

Query: 232 DIRRVGSIK 240
           D+RR+ S+K
Sbjct: 181 DVRRIESLK 189


>gi|114150688|gb|ABI51990.1| recombinase A [Pseudomonas fluorescens]
          Length = 186

 Score =  288 bits (738), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 133/186 (71%), Positives = 162/186 (87%)

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IV+DSV
Sbjct: 1   GATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSV 60

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFGSP
Sbjct: 61  AALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSP 120

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           ETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+YG+
Sbjct: 121 ETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQILYGK 180

Query: 275 GISFFG 280
           GI   G
Sbjct: 181 GIYLNG 186


>gi|307343430|emb|CBJ18156.1| recombinase A [Micromonospora sp. SGA9]
          Length = 188

 Score =  288 bits (738), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 133/188 (70%), Positives = 161/188 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VE+YGPESSGKTT+ALH +A +Q+ GG  AF+DAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEVYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVRLDIRR 235
           SVRLD+RR
Sbjct: 181 SVRLDVRR 188


>gi|255689412|gb|ACU30054.1| RecA [Rhizobium borbori]
          Length = 171

 Score =  288 bits (738), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 141/172 (81%), Positives = 158/172 (91%), Gaps = 1/172 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  +I E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLALHTIA++Q
Sbjct: 1   MKLGSNENIVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALHTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD IYARKLGVDL NLLISQPDTGEQALEITD LVRSGAVD++V+D
Sbjct: 60  KKGGICAFVDAEHALDPIYARKLGVDLHNLLISQPDTGEQALEITDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           SVAALTPRAEI G+MGESLPG+QARLMSQALRKLT+SIS+S  +++FINQ+R
Sbjct: 120 SVAALTPRAEIGGEMGESLPGLQARLMSQALRKLTASISKSNTMVIFINQIR 171


>gi|68637265|emb|CAF21781.1| recombinase A [Lactobacillus mindensis]
          Length = 200

 Score =  288 bits (738), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 135/197 (68%), Positives = 168/197 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  VS+GSL LD ALG+GGFP+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   ISTVSTGSLALDNALGVGGFPRGRIVEIYGPESSGKTTVALHAVAEVQKEGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGV++ +LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEIE
Sbjct: 62  NAMDPAYATALGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+G+MFG+PETT GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FYS++RL++RR   IKD
Sbjct: 182 FYSTIRLEVRRAEQIKD 198


>gi|115395220|gb|ABH11227.1| RecA [Listeria monocytogenes]
 gi|115395222|gb|ABH11228.1| RecA [Listeria monocytogenes]
 gi|115395224|gb|ABH11229.1| RecA [Listeria monocytogenes]
 gi|115395226|gb|ABH11230.1| RecA [Listeria monocytogenes]
 gi|115395228|gb|ABH11231.1| RecA [Listeria monocytogenes]
 gi|115395230|gb|ABH11232.1| RecA [Listeria monocytogenes]
 gi|115395232|gb|ABH11233.1| RecA [Listeria monocytogenes]
 gi|115395234|gb|ABH11234.1| RecA [Listeria monocytogenes]
 gi|115395236|gb|ABH11235.1| RecA [Listeria monocytogenes]
 gi|115395238|gb|ABH11236.1| RecA [Listeria monocytogenes]
 gi|115395240|gb|ABH11237.1| RecA [Listeria monocytogenes]
 gi|115395242|gb|ABH11238.1| RecA [Listeria monocytogenes]
 gi|115395244|gb|ABH11239.1| RecA [Listeria monocytogenes]
 gi|115395246|gb|ABH11240.1| RecA [Listeria monocytogenes]
 gi|115395248|gb|ABH11241.1| RecA [Listeria monocytogenes]
 gi|115395250|gb|ABH11242.1| RecA [Listeria monocytogenes]
 gi|115395252|gb|ABH11243.1| RecA [Listeria monocytogenes]
 gi|115395254|gb|ABH11244.1| RecA [Listeria monocytogenes]
 gi|115395256|gb|ABH11245.1| RecA [Listeria monocytogenes]
 gi|115395258|gb|ABH11246.1| RecA [Listeria monocytogenes]
 gi|115395260|gb|ABH11247.1| RecA [Listeria monocytogenes]
 gi|115395262|gb|ABH11248.1| RecA [Listeria monocytogenes]
 gi|115395264|gb|ABH11249.1| RecA [Listeria monocytogenes]
 gi|115395266|gb|ABH11250.1| RecA [Listeria monocytogenes]
 gi|115395268|gb|ABH11251.1| RecA [Listeria monocytogenes]
 gi|115395270|gb|ABH11252.1| RecA [Listeria monocytogenes]
 gi|115395272|gb|ABH11253.1| RecA [Listeria monocytogenes]
 gi|115395274|gb|ABH11254.1| RecA [Listeria monocytogenes]
 gi|115395276|gb|ABH11255.1| RecA [Listeria monocytogenes]
 gi|115395278|gb|ABH11256.1| RecA [Listeria monocytogenes]
 gi|115395280|gb|ABH11257.1| RecA [Listeria monocytogenes]
 gi|115395282|gb|ABH11258.1| RecA [Listeria monocytogenes]
 gi|115395284|gb|ABH11259.1| RecA [Listeria monocytogenes]
 gi|115395288|gb|ABH11261.1| RecA [Listeria monocytogenes]
 gi|115395290|gb|ABH11262.1| RecA [Listeria monocytogenes]
 gi|115395292|gb|ABH11263.1| RecA [Listeria monocytogenes]
 gi|115395294|gb|ABH11264.1| RecA [Listeria monocytogenes]
 gi|115395296|gb|ABH11265.1| RecA [Listeria monocytogenes]
 gi|115395298|gb|ABH11266.1| RecA [Listeria monocytogenes]
 gi|115395300|gb|ABH11267.1| RecA [Listeria monocytogenes]
 gi|115395302|gb|ABH11268.1| RecA [Listeria monocytogenes]
 gi|115395304|gb|ABH11269.1| RecA [Listeria monocytogenes]
 gi|115395306|gb|ABH11270.1| RecA [Listeria monocytogenes]
 gi|115395308|gb|ABH11271.1| RecA [Listeria monocytogenes]
 gi|115395310|gb|ABH11272.1| RecA [Listeria monocytogenes]
 gi|115395312|gb|ABH11273.1| RecA [Listeria monocytogenes]
 gi|115395314|gb|ABH11274.1| RecA [Listeria monocytogenes]
 gi|115395316|gb|ABH11275.1| RecA [Listeria monocytogenes]
 gi|115395318|gb|ABH11276.1| RecA [Listeria monocytogenes]
 gi|115395320|gb|ABH11277.1| RecA [Listeria monocytogenes]
 gi|115395322|gb|ABH11278.1| RecA [Listeria monocytogenes]
 gi|115395324|gb|ABH11279.1| RecA [Listeria monocytogenes]
 gi|115395326|gb|ABH11280.1| RecA [Listeria monocytogenes]
 gi|115395328|gb|ABH11281.1| RecA [Listeria monocytogenes]
 gi|115395330|gb|ABH11282.1| RecA [Listeria monocytogenes]
 gi|115395332|gb|ABH11283.1| RecA [Listeria monocytogenes]
 gi|115395334|gb|ABH11284.1| RecA [Listeria monocytogenes]
 gi|115395336|gb|ABH11285.1| RecA [Listeria monocytogenes]
 gi|115395338|gb|ABH11286.1| RecA [Listeria monocytogenes]
 gi|115395340|gb|ABH11287.1| RecA [Listeria monocytogenes]
 gi|115395342|gb|ABH11288.1| RecA [Listeria monocytogenes]
          Length = 207

 Score =  288 bits (738), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 139/209 (66%), Positives = 173/209 (82%), Gaps = 2/209 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YG
Sbjct: 1   ALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYG 58

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQAL
Sbjct: 59  PESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQAL 118

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK
Sbjct: 119 EIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSK 178

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNAL 223
            I +FINQ+R K+GVMFG+PE T GG AL
Sbjct: 179 TIAIFINQIREKVGVMFGNPEITPGGRAL 207


>gi|6694830|gb|AAF25415.1|AF214768_1 RecA protein [Arthrobacter sp. 'SMCC G982']
          Length = 196

 Score =  288 bits (738), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 135/196 (68%), Positives = 165/196 (84%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD   LL+
Sbjct: 1   PRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHALDPEYAAKLGVDTDALLV 60

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEIEGDMG+S  G+QARLMSQALR
Sbjct: 61  SQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIEGDMGDSHVGLQARLMSQALR 120

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           K+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ ++K+   
Sbjct: 121 KITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQTLKEGAD 180

Query: 245 ITGNQTRVKVVKNKMA 260
             GN+T+ K+VKNKMA
Sbjct: 181 SVGNRTKAKIVKNKMA 196


>gi|325512781|gb|ADZ23579.1| RecA [Sinorhizobium fredii]
 gi|325512787|gb|ADZ23582.1| RecA [Sinorhizobium fredii]
          Length = 162

 Score =  288 bits (738), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 137/162 (84%), Positives = 153/162 (94%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD
Sbjct: 1   STGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG
Sbjct: 61  PIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 121 DSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 162


>gi|261882273|gb|ACY05020.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  288 bits (738), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 133/202 (65%), Positives = 168/202 (83%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHVIAECQKNGGVCAFIDAEHALDVY 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LG D +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGGDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+  +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMTGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ ++K  +   GN+ +
Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202


>gi|297523475|emb|CBH31145.1| recombination protein A [Mesorhizobium sp. LSE1]
          Length = 178

 Score =  288 bits (737), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 136/179 (75%), Positives = 162/179 (90%), Gaps = 1/179 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTT
Sbjct: 1   IERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVR
Sbjct: 60  LALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           SGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS  +++FI 
Sbjct: 120 SGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFIT 178


>gi|213012340|gb|ACJ38736.1| recombination-repair protein [Vibrio mediterranei]
          Length = 181

 Score =  288 bits (737), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 130/181 (71%), Positives = 161/181 (88%)

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K G TCAF+DAEHALD IYA+KLGVD+ +LL+SQPDTGEQALEI D L RSGA+D++V+D
Sbjct: 1   KQGKTCAFIDAEHALDPIYAKKLGVDIDSLLVSQPDTGEQALEICDALARSGAIDVMVVD 60

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG
Sbjct: 61  SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFG 120

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E  I+Y
Sbjct: 121 NPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQILY 180

Query: 273 G 273
           G
Sbjct: 181 G 181


>gi|68637237|emb|CAF21775.1| recombinase A [Lactobacillus kefiri]
          Length = 200

 Score =  288 bits (737), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 134/197 (68%), Positives = 169/197 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  + SGSL LD ALG+GG+P+G+IVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   ISTIPSGSLALDDALGVGGYPRGKIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD +YA  LGV++ +LL+SQPDTGEQ L+ITD LV SGA+DI+VIDSVAAL PRAEIE
Sbjct: 62  NALDPVYATHLGVNIDDLLLSQPDTGEQGLQITDALVTSGAIDIVVIDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FY+++RL+IRR   IKD
Sbjct: 182 FYATIRLEIRRAEQIKD 198


>gi|81294634|emb|CAI71758.1| recombinase A [Bradyrhizobium sp. 4S16]
 gi|146741015|emb|CAJ44530.1| recombinase A [Bradyrhizobium sp. CH2498]
          Length = 186

 Score =  288 bits (737), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 140/184 (76%), Positives = 165/184 (89%), Gaps = 1/184 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG      + IE VSSGSLGLDIALGIGG PKGRI
Sbjct: 2   MDKSKALAAALSQIERQFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 121 GEQALEICDTLVRSGAVDVMVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180

Query: 190 ISRS 193
           I++S
Sbjct: 181 INKS 184


>gi|115498193|gb|ABI98676.1| RecA [Bradyrhizobium sp. CCBAU 65199]
          Length = 183

 Score =  288 bits (737), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 135/184 (73%), Positives = 165/184 (89%), Gaps = 1/184 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG      + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 179

Query: 207 IGVM 210
           IGVM
Sbjct: 180 IGVM 183


>gi|68635377|emb|CAF21750.1| recombinase A [Lactobacillus brevis]
          Length = 200

 Score =  288 bits (737), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 132/197 (67%), Positives = 169/197 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E V SGSL LD+ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   VETVPSGSLALDVALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD  YA  LGV++ +LL+SQPDTGEQ L+I D L+ SGA+DI+V+DSVAAL PRAEIE
Sbjct: 62  NALDPAYATALGVNIDDLLLSQPDTGEQGLQIADALISSGAIDIVVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FY++VRL++RR   IKD
Sbjct: 182 FYATVRLEVRRAEQIKD 198


>gi|298566908|gb|ADI86530.1| recombination protein A [Sinorhizobium fredii]
          Length = 162

 Score =  288 bits (736), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 137/162 (84%), Positives = 153/162 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL
Sbjct: 1   VSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M
Sbjct: 61  DPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGV
Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGV 162


>gi|213012348|gb|ACJ38740.1| recombination-repair protein [Vibrio rotiferianus]
          Length = 189

 Score =  288 bits (736), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 129/188 (68%), Positives = 163/188 (86%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSG
Sbjct: 1   LELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+R
Sbjct: 61  AIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIR 120

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK
Sbjct: 121 MKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFK 180

Query: 265 QVEFDIMY 272
           +    IMY
Sbjct: 181 EANTQIMY 188


>gi|68637449|emb|CAF21822.1| recombinase A [Pediococcus inopinatus]
          Length = 200

 Score =  288 bits (736), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 132/197 (67%), Positives = 169/197 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  +S+GSL LD ALG+GG+P+GRIVE+YGPESSGKTT+ALH +AQ QK GGT A++DAE
Sbjct: 2   ISTISTGSLALDDALGVGGYPRGRIVEVYGPESSGKTTVALHAVAQVQKEGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD +YA  LGV++ +LL+SQPDTGE+ LEITD LV SGAVD++V+DSVAAL PRAEIE
Sbjct: 62  NALDPVYAEHLGVNIDDLLLSQPDTGEEGLEITDALVSSGAVDLVVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PE T GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPEITPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FY+++RL++RR   IKD
Sbjct: 182 FYATIRLEVRRAEQIKD 198


>gi|209571813|gb|ACI62759.1| recombinase A [Bradyrhizobium yuanmingense]
 gi|242263490|gb|ACS89041.1| recombinase A [Bradyrhizobium yuanmingense]
 gi|242263492|gb|ACS89042.1| recombinase A [Bradyrhizobium yuanmingense]
 gi|242263494|gb|ACS89043.1| recombinase A [Bradyrhizobium yuanmingense]
 gi|242263498|gb|ACS89045.1| recombinase A [Bradyrhizobium yuanmingense]
 gi|242263500|gb|ACS89046.1| recombinase A [Bradyrhizobium yuanmingense]
 gi|242263534|gb|ACS89063.1| recombinase A [Bradyrhizobium sp. SR43]
          Length = 186

 Score =  288 bits (736), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 138/187 (73%), Positives = 166/187 (88%), Gaps = 1/187 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AALSQI+R +GKG++M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYG
Sbjct: 1   ALAAALSQIERQFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S 
Sbjct: 120 EICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSN 179

Query: 195 CILVFIN 201
            +++FIN
Sbjct: 180 TMVIFIN 186


>gi|68637363|emb|CAF21805.1| recombinase A [Lactobacillus versmoldensis]
          Length = 200

 Score =  288 bits (736), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 136/197 (69%), Positives = 167/197 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  VS+GSL LD ALG+GGFP+GRIVEIYGPESSGKTT+ALH +A  QK GGT A++DAE
Sbjct: 2   ISTVSTGSLALDNALGVGGFPRGRIVEIYGPESSGKTTVALHAVAAVQKEGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGV++ +LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEIE
Sbjct: 62  NAMDPAYATALGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+G+MFG+PETT GG ALK
Sbjct: 122 GEMGDSHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FYS++RL++RR   IKD
Sbjct: 182 FYSTIRLEVRRSEQIKD 198


>gi|170676514|gb|ACB30410.1| recombinase A [Rhizobium giardinii]
          Length = 167

 Score =  288 bits (736), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 136/163 (83%), Positives = 154/163 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL
Sbjct: 5   VSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 64

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAAL PRAEIEG+M
Sbjct: 65  DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALVPRAEIEGEM 124

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 125 GDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 167


>gi|81294646|emb|CAI71764.1| recombinase A [Bradyrhizobium sp. WSM1743]
 gi|146741019|emb|CAJ44532.1| recombinase A [Bradyrhizobium sp. CH2509]
 gi|146741039|emb|CAJ44619.1| recombinase A [Bradyrhizobium yuanmingense]
          Length = 186

 Score =  288 bits (736), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 139/184 (75%), Positives = 165/184 (89%), Gaps = 1/184 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG      + IE VSSGSLGLDIALGIGG PKGRI
Sbjct: 2   MDKSKALAAALSQIERQFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 121 GEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180

Query: 190 ISRS 193
           I++S
Sbjct: 181 INKS 184


>gi|297528267|gb|ADI46169.1| recombination protein A [Rhizobium sp. CCBAU 65141]
          Length = 173

 Score =  288 bits (736), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 139/172 (80%), Positives = 160/172 (93%), Gaps = 1/172 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQ
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQ 173


>gi|47109410|emb|CAG28701.1| recA [Propionibacterium jensenii]
          Length = 204

 Score =  287 bits (735), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 139/204 (68%), Positives = 168/204 (82%), Gaps = 2/204 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           G GA+M+LG + ++   I  + +GS+ LD+ALG+GG P+GRIVEIYGPESSGKTT+ALH 
Sbjct: 2   GVGAVMRLGERETV--KIPAIPTGSVALDVALGVGGLPRGRIVEIYGPESSGKTTVALHA 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q  GG CAF+DAEHALD  YA+ LGVD  NLLISQPD GEQALEI D LVRSGA++
Sbjct: 60  IANAQAEGGVCAFIDAEHALDPEYAKNLGVDTDNLLISQPDNGEQALEIADTLVRSGALE 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRK+T +++ +    +FINQ+R KI
Sbjct: 120 LIVIDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKMTGALNAAGTTAIFINQLREKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRL 231
           GVMFGSPETTTGG ALKFY+S  L
Sbjct: 180 GVMFGSPETTTGGRALKFYASSHL 203


>gi|307343448|emb|CBJ18165.1| recombinase A [Micromonospora sp. SR15]
          Length = 187

 Score =  287 bits (735), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 135/187 (72%), Positives = 160/187 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDALLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVRLDIR 234
           SVRLD+R
Sbjct: 181 SVRLDVR 187


>gi|146741033|emb|CAJ44540.1| recombinase A [Bradyrhizobium sp. KFR22]
          Length = 186

 Score =  287 bits (735), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 139/184 (75%), Positives = 165/184 (89%), Gaps = 1/184 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG      + IE VSSGSLGLDIALGIGG PKGRI
Sbjct: 2   MDKSKALAAALSQIERQFGKGSVMKLGKSDRSMD-IEAVSSGSLGLDIALGIGGLPKGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 121 GEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180

Query: 190 ISRS 193
           I++S
Sbjct: 181 INKS 184


>gi|118767317|gb|ABL11494.1| RecA [Rhizobium sp. PEPSM12]
          Length = 180

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 143/180 (79%), Positives = 163/180 (90%), Gaps = 2/180 (1%)

Query: 15  ALEAALSQIQRVY-GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           ALEAALSQI+ V   +  IM+LGS  ++ E IE +S+GSLGLDIALG+GG PKGRI+EIY
Sbjct: 1   ALEAALSQIEAVVSARARIMKLGSNENVIE-IETISTGSLGLDIALGVGGLPKGRIIEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQA
Sbjct: 60  GPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 LEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 179


>gi|117675785|emb|CAL69163.1| recombinase A [Rathayibacter tritici]
          Length = 204

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 141/203 (69%), Positives = 167/203 (82%)

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
           H IA +Q+ GG  AF+DAEHALD  YA+KLGVD+ +LL+SQPDTGEQALEI DMLVRSG+
Sbjct: 1   HAIANAQRNGGIAAFIDAEHALDPEYAKKLGVDIDSLLVSQPDTGEQALEIADMLVRSGS 60

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  ++ +   ++FINQ+R 
Sbjct: 61  IDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNTTNTTMIFINQLRE 120

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA PFK 
Sbjct: 121 KIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKMAPPFKH 180

Query: 266 VEFDIMYGEGISFFGELIDLGVK 288
            EFDI+YG GIS  G LID GV+
Sbjct: 181 SEFDILYGIGISREGSLIDFGVE 203


>gi|212286496|dbj|BAG82896.1| RecA protein [Rhizobium sp. Pt1-Nf14]
          Length = 175

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 139/176 (78%), Positives = 162/176 (92%), Gaps = 1/176 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           +++LEAALS I+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI+EI
Sbjct: 1   ARSLEAALSHIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           ALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+
Sbjct: 120 ALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTA 175


>gi|146741025|emb|CAJ44535.1| recombinase A [Bradyrhizobium sp. FTA7]
          Length = 186

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 138/184 (75%), Positives = 165/184 (89%), Gaps = 1/184 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG      + +E VSSGSLGLDIALGIGG PKGR+
Sbjct: 2   MDKSKALAAALSQIERQFGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRV 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 121 GEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180

Query: 190 ISRS 193
           I++S
Sbjct: 181 INKS 184


>gi|9909861|emb|CAC04378.1| RecA protein [Phyllobacterium myrsinacearum]
          Length = 173

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 139/174 (79%), Positives = 160/174 (91%), Gaps = 1/174 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L+AALSQI+R +GKG+IM+L +   + E IE VS+GSL LDIALG+GG PKGRIVEIYGP
Sbjct: 1   LDAALSQIERAFGKGSIMRLETNEQVVE-IETVSTGSLSLDIALGVGGLPKGRIVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           ITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 120 ITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 173


>gi|68637315|emb|CAF21794.1| recombinase A [Lactobacillus pontis]
          Length = 200

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 132/197 (67%), Positives = 169/197 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  +SSGSL +D ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ Q+ GGT A++DAE
Sbjct: 2   IATISSGSLAIDKALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQRQGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD  YA  LGVD+ NLL+SQPDTGE+ LEI D L+ SGAVD++V+DSVAAL PRAEIE
Sbjct: 62  NALDPQYAEALGVDVDNLLLSQPDTGEEGLEIADALISSGAVDLVVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+  I+++K I +FINQ+R K+GVMFG+PETTTGG+ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTTGGSALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FYS++R++IRR   IK+
Sbjct: 182 FYSTIRMEIRRAEQIKN 198


>gi|68637453|emb|CAF21823.1| recombinase A [Pediococcus parvulus]
          Length = 200

 Score =  287 bits (734), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 131/197 (66%), Positives = 170/197 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  + +GSL LD ALG+GG+P+GRIV++YGPESSGKTT+ALH +AQ QK GGT A++DAE
Sbjct: 2   IATMPTGSLALDDALGVGGYPRGRIVQVYGPESSGKTTVALHAVAQVQKEGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD +YA+ LGV++ +LL+SQPDTGE+ LEITD LV SGAVD++V+DSVAAL PRAEIE
Sbjct: 62  NALDPVYAKHLGVNIDDLLLSQPDTGEEGLEITDALVSSGAVDLVVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FY+++RL++RR   IKD
Sbjct: 182 FYATIRLEVRRAEQIKD 198


>gi|32345042|gb|AAM93531.1| RecA protein [Rickettsia honei]
          Length = 176

 Score =  287 bits (734), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 134/176 (76%), Positives = 157/176 (89%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALGIGG PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  Y
Sbjct: 1   SLGLDIALGIGGVPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+KLGV++  L+ISQPDTGEQALEI D L+RS  +D+I+IDSVAAL P++EIEG+MG++ 
Sbjct: 61  AKKLGVNIDELIISQPDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMGDAQ 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
              QARLMSQALRKLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+
Sbjct: 121 MASQARLMSQALRKLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYA 176


>gi|68637217|emb|CAF21772.1| recombinase A [Lactobacillus hilgardii]
          Length = 200

 Score =  287 bits (734), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 132/197 (67%), Positives = 169/197 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  + +GSL LD ALG+GG+P+GRIVE+YGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   ISTIPTGSLALDEALGVGGYPRGRIVEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD +YA  LGV++ +LL+SQPDTGEQ L+ITD LV SGA+DI+VIDSVAAL PRAEIE
Sbjct: 62  NALDPVYATHLGVNIDDLLLSQPDTGEQGLQITDTLVTSGAIDIVVIDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GEMGDTHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FY+++RL+IRR   IK+
Sbjct: 182 FYATIRLEIRRAEQIKN 198


>gi|115395286|gb|ABH11260.1| RecA [Listeria monocytogenes]
          Length = 206

 Score =  287 bits (734), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 138/208 (66%), Positives = 172/208 (82%), Gaps = 2/208 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YG
Sbjct: 1   ALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYG 58

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQAL
Sbjct: 59  PESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQAL 118

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK
Sbjct: 119 EIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSK 178

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNA 222
            I +FINQ+R K+GVMFG+PE T GG A
Sbjct: 179 TIAIFINQIREKVGVMFGNPEITPGGRA 206


>gi|195542200|gb|ACF98310.1| RecA [Sinorhizobium meliloti]
          Length = 166

 Score =  287 bits (734), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 137/162 (84%), Positives = 152/162 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAE
Sbjct: 5   IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAE 64

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VIDSVAAL PRAEIE
Sbjct: 65  HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVIDSVAALVPRAEIE 124

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 125 GEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 166


>gi|118767305|gb|ABL11488.1| RecA [Rhizobium leguminosarum bv. viciae]
          Length = 174

 Score =  287 bits (734), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 138/173 (79%), Positives = 161/173 (93%), Gaps = 1/173 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           SQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGK
Sbjct: 1   SQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGK 59

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD L
Sbjct: 60  TTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTL 119

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           VRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 VRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 172


>gi|306517547|emb|CBO93062.1| DNA recombinase A [Pantoea stewartii subsp. stewartii]
          Length = 184

 Score =  287 bits (734), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 133/182 (73%), Positives = 159/182 (87%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LDIALG GG P GRIVEIYGPE+SGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+K
Sbjct: 1   LDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKK 60

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           LGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+
Sbjct: 61  LGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGL 120

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
            AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIR
Sbjct: 121 AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR 180

Query: 235 RV 236
           R+
Sbjct: 181 RL 182


>gi|322510291|gb|ADX05531.1| recombination protein A [Sinorhizobium sp. CCBAU 05696]
          Length = 165

 Score =  287 bits (734), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 134/162 (82%), Positives = 153/162 (94%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A++QK GG CAFVDAE
Sbjct: 4   IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAEAQKKGGICAFVDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIE
Sbjct: 64  HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 124 GEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 165


>gi|81294640|emb|CAI71761.1| recombinase A [Bradyrhizobium sp. BDV5325]
 gi|146740927|emb|CAJ44524.1| recombinase A [Bradyrhizobium sp. C8]
 gi|146740929|emb|CAJ44525.1| recombinase A [Bradyrhizobium sp. CH2310]
 gi|146740931|emb|CAJ44526.1| recombinase A [Bradyrhizobium sp. CH2318]
 gi|146740935|emb|CAJ44528.1| recombinase A [Bradyrhizobium sp. CH2443]
 gi|146741017|emb|CAJ44531.1| recombinase A [Bradyrhizobium sp. CH2506]
 gi|146741021|emb|CAJ44533.1| recombinase A [Bradyrhizobium sp. CH2510]
 gi|146741023|emb|CAJ44534.1| recombinase A [Bradyrhizobium sp. FTA6]
 gi|146741027|emb|CAJ44536.1| recombinase A [Bradyrhizobium sp. Lcamp1]
 gi|146741035|emb|CAJ44617.1| recombinase A [Bradyrhizobium japonicum]
 gi|161784374|emb|CAJ44538.1| recombinase A [Bradyrhizobium sp. RLA08]
          Length = 186

 Score =  286 bits (733), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 137/184 (74%), Positives = 165/184 (89%), Gaps = 1/184 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG      + +E VSSGSLGLDIALGIGG PKGR+
Sbjct: 2   MDKSKALAAALSQIERQFGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRV 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 121 GEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180

Query: 190 ISRS 193
           I++S
Sbjct: 181 INKS 184


>gi|68635354|emb|CAF21746.1| recombinase A [Lactobacillus amylophilus]
          Length = 200

 Score =  286 bits (733), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 134/197 (68%), Positives = 167/197 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  VS+GS+ LD A+G+GG+PKGRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   ISTVSTGSIALDTAIGVGGYPKGRIVEIYGPESSGKTTVALHAVAEVQKMGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGV++ +LL+SQPDTGEQ LEI D LV SGAVDIIV+DSVAAL PRAEIE
Sbjct: 62  NAMDPAYAEALGVNIDDLLLSQPDTGEQGLEIADALVASGAVDIIVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG++  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PE T GG ALK
Sbjct: 122 GDMGDAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGVMFGNPEITPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FYS++RL++RR   IK+
Sbjct: 182 FYSTIRLEVRRAEQIKN 198


>gi|291172958|gb|ADD82746.1| recombinase A [Rhizobium sp. CCBAU 01209]
          Length = 161

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 136/161 (84%), Positives = 153/161 (95%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL
Sbjct: 1   VSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIEG+M
Sbjct: 61  DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIG
Sbjct: 121 GDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 161


>gi|115498181|gb|ABI98670.1| RecA [Bradyrhizobium sp. CCBAU 23230]
          Length = 182

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 137/183 (74%), Positives = 164/183 (89%), Gaps = 1/183 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT
Sbjct: 1   GKGSIMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHT 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           +A++QK GG CAF+DAEHALD ++ARKLGV++  LLISQPDTGEQALEI D LVRSGAVD
Sbjct: 60  VAEAQKKGGICAFIDAEHALDPVHARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVD 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 120 VLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 179

Query: 208 GVM 210
           GVM
Sbjct: 180 GVM 182


>gi|81294642|emb|CAI71762.1| recombinase A [Bradyrhizobium sp. WSM1704]
          Length = 186

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 138/184 (75%), Positives = 164/184 (89%), Gaps = 1/184 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG      + +E VSSGSLGLDIALG+GG PKGRI
Sbjct: 2   MDKSKALSAALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 121 GEQALEIADTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180

Query: 190 ISRS 193
           I++S
Sbjct: 181 INKS 184


>gi|68635346|emb|CAF21744.1| recombinase A [Lactobacillus alimentarius]
          Length = 200

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 133/197 (67%), Positives = 168/197 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  VS+GSL LD ALG+GGFP+GRIVEIYGPESSGKTT+ALH +AQ QK GGT A++DAE
Sbjct: 2   ISTVSTGSLALDNALGVGGFPRGRIVEIYGPESSGKTTVALHAVAQVQKQGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA+ LGV++ +LL+S PDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEIE
Sbjct: 62  NAMDPEYAKALGVNIDDLLLSHPDTGEQGLEIADALVTSGAVDIVVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+G+MFG+PETT GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGIMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FY+++RL++RR   IKD
Sbjct: 182 FYATIRLEVRRAEQIKD 198


>gi|297528263|gb|ADI46167.1| recombination protein A [Rhizobium sp. CCBAU 45157]
          Length = 171

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 142/171 (83%), Positives = 158/171 (92%), Gaps = 1/171 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  +I E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 2   VDKSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMS
Sbjct: 121 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMS 171


>gi|169883800|gb|ACA97996.1| recombination protein A [Mesorhizobium septentrionale]
 gi|169883802|gb|ACA97997.1| recombination protein A [Mesorhizobium septentrionale]
 gi|169883816|gb|ACA98004.1| recombination protein A [Mesorhizobium temperatum]
 gi|169883826|gb|ACA98009.1| recombination protein A [Mesorhizobium amorphae]
          Length = 167

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 134/163 (82%), Positives = 154/163 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHAL
Sbjct: 5   VPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHAL 64

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+M
Sbjct: 65  DPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 124

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+SLPG+QARLMSQALRKLT+SISRS  +++FINQ+RMKIGVM
Sbjct: 125 GDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKIGVM 167


>gi|37956378|gb|AAP15363.1| RecA [Pelobacter acetylenicus]
          Length = 217

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 134/210 (63%), Positives = 177/210 (84%), Gaps = 1/210 (0%)

Query: 3   YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
           + + M   ++ +A++ A+SQI++ +GKG+IM+LG + ++   +  + +G+L LDIALG+G
Sbjct: 9   WMRSMTTDNRERAIDLAMSQIEKQFGKGSIMRLG-EDAVVPDVATIPTGALSLDIALGVG 67

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G P+GR++EIYGPESSGKTTLALH +A++QK GG  AFVDAEHALD  YARKLGV   +L
Sbjct: 68  GIPRGRVIEIYGPESSGKTTLALHIVAEAQKKGGIAAFVDAEHALDIHYARKLGVRTDDL 127

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           L+SQPDTGEQALEIT++LVRSGA+D++VIDSVAAL PRAEIEG+MG++  G+QARLMSQA
Sbjct: 128 LVSQPDTGEQALEITEVLVRSGAIDVLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQA 187

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           LRKLT +IS+S C ++FINQ+RMKIGVMFG
Sbjct: 188 LRKLTGTISKSNCCVIFINQIRMKIGVMFG 217


>gi|322510293|gb|ADX05532.1| recombination protein A [Sinorhizobium fredii]
          Length = 166

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 136/162 (83%), Positives = 152/162 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAE
Sbjct: 4   IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIE
Sbjct: 64  HALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 124 GEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 165


>gi|297528257|gb|ADI46164.1| recombination protein A [Rhizobium sp. CCBAU 25179]
          Length = 170

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 142/171 (83%), Positives = 158/171 (92%), Gaps = 1/171 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  +I E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 1   VDKSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 60  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMS
Sbjct: 120 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMS 170


>gi|218189546|gb|EEC71973.1| hypothetical protein OsI_04810 [Oryza sativa Indica Group]
          Length = 339

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 155/293 (52%), Positives = 215/293 (73%), Gaps = 10/293 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           + VVS+GS  LD    +G     R++E+YGPE+SGKTTLALH IA++QK GG CAFVDAE
Sbjct: 12  VPVVSTGSFSLDWHWELG-----RVIEVYGPEASGKTTLALHVIAEAQKHGGYCAFVDAE 66

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD   A  +GV+  NLL+SQPD GEQAL + D L+RSG+VD++V+DSVAAL P++E+ 
Sbjct: 67  HALDPALAESIGVNTSNLLLSQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKSELA 126

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM--FGSP-ETTTGGN 221
           G+MG++   +QARLMSQALRKL+ S+S S+ IL+FINQ+R K+     FG P E T+GGN
Sbjct: 127 GEMGDAHVALQARLMSQALRKLSHSLSLSQTILLFINQIRSKVTTFGGFGGPMEVTSGGN 186

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE 281
           ALKFY+SVR++I+R+G +K  +   G+Q  VK+VKNK A PFK  +F++ +G+GI    E
Sbjct: 187 ALKFYASVRMNIKRIGLVKKGEETIGSQVLVKIVKNKHAPPFKTAQFELEFGKGICRSSE 246

Query: 282 LIDLGVKASIVDK-SGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           LI+LG+K  +V K  GA++SF  +   +G++  K +L EN  IA+ +E+ LR+
Sbjct: 247 LIELGLKHKLVKKLGGAFYSFNEESY-RGKDALKSYLNENESIAKELETNLRK 298


>gi|81294638|emb|CAI71760.1| recombinase A [Bradyrhizobium sp. BDV5057]
          Length = 186

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 137/184 (74%), Positives = 165/184 (89%), Gaps = 1/184 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG      + +E VSSGSLGLDIALGIGG PKGR+
Sbjct: 2   MDKSKALAAALSQIERQFGKGSVMRLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRV 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 121 GEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180

Query: 190 ISRS 193
           I++S
Sbjct: 181 INKS 184


>gi|68637435|emb|CAF21819.1| recombinase A [Pediococcus damnosus]
          Length = 200

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 133/197 (67%), Positives = 168/197 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  +S+GSL LD ALG+GG+P+GRIVE+YGPESSGKTT+ALH +AQ QK GGT A++DAE
Sbjct: 2   ISTISTGSLPLDDALGVGGYPRGRIVEVYGPESSGKTTVALHAVAQVQKEGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD +YA  LGV++ +LL+SQPDTGE+ LEITD LV SGAVD++V+DSVAAL PRAEIE
Sbjct: 62  NALDPVYAEHLGVNIDDLLLSQPDTGEEGLEITDALVSSGAVDLVVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PE T GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPEVTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FY+++RL IRR   IKD
Sbjct: 182 FYATIRLKIRRAEQIKD 198


>gi|149183380|ref|ZP_01861816.1| RecA [Bacillus sp. SG-1]
 gi|148848923|gb|EDL63137.1| RecA [Bacillus sp. SG-1]
          Length = 249

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 150/231 (64%), Positives = 190/231 (82%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YA+KLGV++  LL+SQPDTGEQALEI + LVRSGAVDI+VIDSVAAL P+AEIEG+
Sbjct: 1   LDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGE 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+S  G+QARLMSQALRKL+ +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFY
Sbjct: 61  MGDSHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFY 120

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
           SSVRL++RR  ++K  + + GN+T+VKVVKNK+A PF+  E DIMYG+GIS  GE+ID+G
Sbjct: 121 SSVRLEVRRAETLKQGNEMVGNKTKVKVVKNKVAPPFRVAEVDIMYGQGISREGEIIDMG 180

Query: 287 VKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
            +  IV KSGAW+S+  +RLGQGREN+KIFL+EN EI   I   +R + GL
Sbjct: 181 SELDIVQKSGAWYSYNEERLGQGRENAKIFLKENPEIRNEIMLKIRDHYGL 231


>gi|158631776|gb|ABW74993.1| RecA [Mesorhizobium tarimense]
          Length = 168

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 134/163 (82%), Positives = 154/163 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHAL
Sbjct: 5   VPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHAL 64

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+M
Sbjct: 65  DPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 124

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+SLPG+QARLMSQALRKLT+SISRS  +++FINQ+RMKIGVM
Sbjct: 125 GDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKIGVM 167


>gi|213950704|gb|ACJ54597.1| recombination protein A [Rhizobium sp. CCBAU 03115]
          Length = 176

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 140/174 (80%), Positives = 158/174 (90%), Gaps = 1/174 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TI
Sbjct: 3   KGSIMKLGGKDSIVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTI 61

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 62  AEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDV 121

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           +VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S C++ F N 
Sbjct: 122 LVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNCMVFFFNH 175


>gi|81294632|emb|CAI71757.1| recombinase A [Bradyrhizobium sp. 3S16]
 gi|81294636|emb|CAI71759.1| recombinase A [Bradyrhizobium sp. BDV5029]
 gi|81294650|emb|CAI71766.1| recombinase A [Bradyrhizobium sp. WSM2148]
 gi|81294652|emb|CAI71767.1| recombinase A [Bradyrhizobium sp. WSM2149]
 gi|81294654|emb|CAI71768.1| recombinase A [Bradyrhizobium sp. WSM2150]
 gi|81294656|emb|CAI71769.1| recombinase A [Bradyrhizobium sp. WSM2152]
 gi|81294658|emb|CAI71770.1| recombinase A [Bradyrhizobium sp. WSM2154]
 gi|81294660|emb|CAI71771.1| recombinase A [Bradyrhizobium sp. WSM2155]
 gi|81294662|emb|CAI71772.1| recombinase A [Bradyrhizobium sp. WSM2157]
 gi|81294664|emb|CAI71773.1| recombinase A [Bradyrhizobium sp. WSM471]
 gi|81294666|emb|CAI71774.1| recombinase A [Bradyrhizobium sp. WU140]
 gi|81294668|emb|CAI71775.1| recombinase A [Bradyrhizobium sp. WU425]
 gi|81294670|emb|CAI71776.1| recombinase A [Bradyrhizobium sp. A13]
 gi|81294672|emb|CAI71777.1| recombinase A [Bradyrhizobium sp. VK7]
 gi|81294674|emb|CAI71778.1| recombinase A [Bradyrhizobium sp. W72]
 gi|146740921|emb|CAJ44521.1| recombinase A [Bradyrhizobium sp. BLUH1]
 gi|146741029|emb|CAJ44537.1| recombinase A [Bradyrhizobium sp. Lcamp8]
          Length = 186

 Score =  286 bits (732), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 138/184 (75%), Positives = 164/184 (89%), Gaps = 1/184 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG      + +E VSSGSLGLDIALGIGG PKGR+
Sbjct: 2   MDKSKALAAALSQIERQFGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRV 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 121 GEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180

Query: 190 ISRS 193
           I++S
Sbjct: 181 INKS 184


>gi|68635366|emb|CAF21749.1| recombinase A [Lactobacillus aviarius subsp. araffinosus]
          Length = 200

 Score =  286 bits (732), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 133/197 (67%), Positives = 167/197 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  V +GSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   ISTVPTGSLALDEALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQKNGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD  YA  LGV++ +LL+SQPDTGE+ LEI D LV SGA+DI+V+DSVAAL PRAEIE
Sbjct: 62  NALDPAYASALGVNIDDLLLSQPDTGEEGLEIADALVSSGAIDIVVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FYS++RLD+RR   IKD
Sbjct: 182 FYSTIRLDVRRAEQIKD 198


>gi|158631778|gb|ABW74994.1| RecA [Mesorhizobium sp. CCBAU 83282]
          Length = 169

 Score =  286 bits (732), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 134/163 (82%), Positives = 154/163 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHAL
Sbjct: 7   VPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHAL 66

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+M
Sbjct: 67  DPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 126

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+SLPG+QARLMSQALRKLT+SISRS  +++FINQ+RMKIGVM
Sbjct: 127 GDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKIGVM 169


>gi|158631808|gb|ABW75009.1| RecA [Rhizobium sp. CCBAU 83267]
          Length = 170

 Score =  286 bits (732), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 134/164 (81%), Positives = 155/164 (94%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 4   IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE
Sbjct: 64  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIG
Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIG 167


>gi|150024098|gb|ABR58853.1| recombination protein A [Mesorhizobium temperatum]
          Length = 171

 Score =  286 bits (732), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 134/164 (81%), Positives = 154/164 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAE
Sbjct: 5   IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAE 64

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIE
Sbjct: 65  HALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIE 124

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+MG+SLPG+QARLMSQALRKLT+SISRS  +++FINQ+RMKIG
Sbjct: 125 GEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKIG 168


>gi|68637334|emb|CAF21798.1| recombinase A [Lactobacillus ruminis]
          Length = 200

 Score =  286 bits (732), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 135/197 (68%), Positives = 167/197 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  V +GSL LD ALG+GGFP+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   ISTVPTGSLSLDEALGVGGFPRGRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD  YA+ LGV++  LL+SQPDTGEQ LEI D LV SGA+DI+V+DSVAAL PRAEIE
Sbjct: 62  NALDPAYAQALGVNIDELLLSQPDTGEQGLEICDALVSSGAIDIVVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GEMGDTHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FYS+VRL++RR   IKD
Sbjct: 182 FYSTVRLEVRRAEQIKD 198


>gi|158147281|gb|ABW22694.1| recA [Sinorhizobium sp. CCBAU 83647]
 gi|158147297|gb|ABW22702.1| recA [Sinorhizobium sp. CCBAU 83742]
 gi|158147301|gb|ABW22704.1| recA [Sinorhizobium sp. CCBAU 83753]
 gi|158147303|gb|ABW22705.1| recA [Sinorhizobium sp. CCBAU 83765]
          Length = 165

 Score =  286 bits (732), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 136/162 (83%), Positives = 152/162 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAE
Sbjct: 4   IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIE
Sbjct: 64  HALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 124 GEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 165


>gi|307343420|emb|CBJ18151.1| recombinase A [Micromonospora sp. SG8]
          Length = 186

 Score =  286 bits (732), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 134/185 (72%), Positives = 159/185 (85%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD 
Sbjct: 2   TGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDP 61

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
            YA+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+
Sbjct: 62  EYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGD 121

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           S  G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SV
Sbjct: 122 SHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASV 181

Query: 230 RLDIR 234
           RLD+R
Sbjct: 182 RLDVR 186


>gi|158631810|gb|ABW75010.1| RecA [Rhizobium sp. CCBAU 83431]
          Length = 163

 Score =  286 bits (732), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 134/163 (82%), Positives = 155/163 (95%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL
Sbjct: 1   ISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+M
Sbjct: 61  DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIGVM
Sbjct: 121 GDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 163


>gi|307343446|emb|CBJ18164.1| recombinase A [Micromonospora sp. SR6]
          Length = 183

 Score =  286 bits (732), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 133/183 (72%), Positives = 158/183 (86%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPDY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   LL+SQPDTGEQALEITDMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDALLVSQPDTGEQALEITDMLVRSGAIDIVVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
            G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRL
Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRL 180

Query: 232 DIR 234
           D+R
Sbjct: 181 DVR 183


>gi|68637418|emb|CAF21815.1| recombinase A [Carnobacterium maltaromaticum]
          Length = 200

 Score =  286 bits (732), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 132/193 (68%), Positives = 164/193 (84%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + SGSL LD+ALG+GG+PKGRI+E+YGPESSGKTT++LH +A++QK GGT AF+DAEHAL
Sbjct: 5   IPSGSLALDVALGVGGYPKGRILEVYGPESSGKTTVSLHAVAEAQKHGGTAAFIDAEHAL 64

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA  LGV++  L +SQPDTGEQALEI D LV SGA+DI+V+DSVAAL PRAEIEG+M
Sbjct: 65  DPKYAAALGVNIDELFLSQPDTGEQALEIADALVSSGAIDIVVVDSVAALVPRAEIEGEM 124

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G S  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PE T GG ALKFY+
Sbjct: 125 GHSHVGLQARLMSQALRKLSGSINKTKTIGLFINQIREKVGVMFGNPEVTPGGRALKFYA 184

Query: 228 SVRLDIRRVGSIK 240
           +VRL++RR   IK
Sbjct: 185 TVRLEVRRAEQIK 197


>gi|325512797|gb|ADZ23587.1| RecA [Sinorhizobium fredii]
          Length = 161

 Score =  286 bits (731), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 136/161 (84%), Positives = 152/161 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL
Sbjct: 1   VSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M
Sbjct: 61  DPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIG
Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 161


>gi|255040349|gb|ACT99987.1| recombinase A [Lactobacillus sp. BL304]
          Length = 212

 Score =  286 bits (731), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 130/208 (62%), Positives = 172/208 (82%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  + SGSL LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 5   ISTIPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 64

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+
Sbjct: 65  NAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEID 124

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG+S  G+QARLMSQALRKL+ +IS++K I VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 125 GDMGDSHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGVMFGNPETTPGGRALK 184

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           FYS++RL++RR   IK    + GN+ ++
Sbjct: 185 FYSTIRLEVRRAEQIKQGSDVIGNRVKL 212


>gi|68637382|emb|CAF21809.1| recombinase A [Leuconostoc fallax]
          Length = 200

 Score =  286 bits (731), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 133/197 (67%), Positives = 167/197 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E + SGS+ LDIALG+GG+PKGRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   VETIPSGSVKLDIALGVGGYPKGRIIEVYGPESSGKTTIALHAVAEVQKQGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +AL+  YA  LGVD K LL+SQPDTGEQ LEI D LV+SGAVD+IV+DS+AAL PRAEIE
Sbjct: 62  NALNVKYAEALGVDSKELLLSQPDTGEQGLEIADALVQSGAVDMIVVDSIAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL  +++R+  I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FYS+VRL++RR   IKD
Sbjct: 182 FYSTVRLEVRRSTQIKD 198


>gi|295984330|gb|ADG63633.1| RecA [Sinorhizobium sp. CCBAU 05640]
          Length = 165

 Score =  286 bits (731), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 135/162 (83%), Positives = 152/162 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAE
Sbjct: 4   IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIE
Sbjct: 64  HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 124 GEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 165


>gi|158632172|gb|ABW75482.1| RecA [Rhizobium multihospitium]
 gi|158632180|gb|ABW75486.1| RecA [Rhizobium multihospitium]
 gi|158632182|gb|ABW75487.1| RecA [Rhizobium multihospitium]
 gi|158632184|gb|ABW75488.1| RecA [Rhizobium multihospitium]
 gi|158632186|gb|ABW75489.1| RecA [Rhizobium multihospitium]
          Length = 162

 Score =  286 bits (731), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 134/161 (83%), Positives = 153/161 (95%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL
Sbjct: 2   VSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+M
Sbjct: 62  DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 121

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIG
Sbjct: 122 GDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 162


>gi|259906087|gb|ACW84345.1| RecA [Rhizobium sp. F11]
          Length = 171

 Score =  286 bits (731), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 141/170 (82%), Positives = 157/170 (92%), Gaps = 1/170 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  +I E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLM
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLM 171


>gi|306517553|emb|CBO93066.1| DNA recombinase A [Pantoea stewartii subsp. stewartii]
          Length = 183

 Score =  286 bits (731), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 133/183 (72%), Positives = 159/183 (86%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LDIALG GG P GRIVEIYGPE+SGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+K
Sbjct: 1   LDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKK 60

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           LGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+
Sbjct: 61  LGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGL 120

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
            AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIR
Sbjct: 121 AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR 180

Query: 235 RVG 237
            +G
Sbjct: 181 GIG 183


>gi|158631814|gb|ABW75012.1| RecA [Rhizobium sp. CCBAU 83515]
          Length = 164

 Score =  286 bits (731), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 134/163 (82%), Positives = 155/163 (95%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL
Sbjct: 2   ISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+M
Sbjct: 62  DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEM 121

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIGVM
Sbjct: 122 GDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 164


>gi|297528255|gb|ADI46163.1| recombination protein A [Rhizobium sp. CCBAU 21106]
          Length = 174

 Score =  286 bits (731), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 140/173 (80%), Positives = 159/173 (91%), Gaps = 1/173 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQA
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQA 174


>gi|195542196|gb|ACF98308.1| RecA [Rhizobium leguminosarum]
          Length = 169

 Score =  286 bits (731), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 134/164 (81%), Positives = 155/164 (94%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 6   IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 65

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE
Sbjct: 66  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 125

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIG
Sbjct: 126 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIG 169


>gi|223885871|gb|ACN22607.1| recombination protein A [Rhizobium oryzae]
          Length = 162

 Score =  286 bits (731), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 135/161 (83%), Positives = 152/161 (94%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE V +GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA+SQK GG CAFVDAE
Sbjct: 2   IETVPTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAESQKKGGVCAFVDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIE
Sbjct: 62  HALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           G+MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RM
Sbjct: 122 GEMGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRM 162


>gi|169883840|gb|ACA98016.1| recombination protein A [Mesorhizobium sp. CCBAU 73184]
 gi|169883842|gb|ACA98017.1| recombination protein A [Mesorhizobium sp. CCBAU 11166]
          Length = 167

 Score =  286 bits (731), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 133/163 (81%), Positives = 154/163 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHAL
Sbjct: 5   VPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHAL 64

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+M
Sbjct: 65  DPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 124

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+SLPG+QARLMSQALRKLT+SISRS  +++FINQ+RMKIGVM
Sbjct: 125 GDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKIGVM 167


>gi|169883812|gb|ACA98002.1| recombination protein A [Rhizobium leguminosarum]
          Length = 167

 Score =  286 bits (731), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 134/163 (82%), Positives = 155/163 (95%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL
Sbjct: 5   ISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 64

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+M
Sbjct: 65  DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEM 124

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIGVM
Sbjct: 125 GDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 167


>gi|306517565|emb|CBO93077.1| DNA recombinase A [Pantoea agglomerans]
          Length = 183

 Score =  286 bits (731), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 133/180 (73%), Positives = 158/180 (87%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+K
Sbjct: 1   LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIASAQRKGKTCAFIDAEHALDPVYAKK 60

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           LGVD++NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+
Sbjct: 61  LGVDIENLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGL 120

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
            AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIR
Sbjct: 121 AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR 180


>gi|158631794|gb|ABW75002.1| RecA [Rhizobium sp. CCBAU 83452]
          Length = 173

 Score =  286 bits (731), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 134/164 (81%), Positives = 155/164 (94%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 7   IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 66

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE
Sbjct: 67  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 126

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIG
Sbjct: 127 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIG 170


>gi|325512803|gb|ADZ23590.1| RecA [Sinorhizobium fredii]
          Length = 160

 Score =  286 bits (731), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 136/160 (85%), Positives = 151/160 (94%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD I
Sbjct: 1   GSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPI 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+S
Sbjct: 61  YARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDS 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           LPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 121 LPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 160


>gi|158631784|gb|ABW74997.1| RecA [Rhizobium sp. CCBAU 83480]
          Length = 168

 Score =  286 bits (731), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 134/164 (81%), Positives = 155/164 (94%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 5   IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 64

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE
Sbjct: 65  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 124

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIG
Sbjct: 125 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIG 168


>gi|297523469|emb|CBH31142.1| recombination protein A [Mesorhizobium sp. LPYR2]
          Length = 178

 Score =  286 bits (731), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 137/173 (79%), Positives = 159/173 (91%), Gaps = 1/173 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 7   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 65

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 66  VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 125

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQA
Sbjct: 126 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQA 178


>gi|158631780|gb|ABW74995.1| RecA [Mesorhizobium septentrionale]
          Length = 169

 Score =  286 bits (731), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 133/163 (81%), Positives = 154/163 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHAL
Sbjct: 7   VPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHAL 66

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+M
Sbjct: 67  DPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 126

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+SLPG+QARLMSQALRKLT+SISRS  +++FINQ+RMK+GVM
Sbjct: 127 GDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKVGVM 169


>gi|306517567|emb|CBO93079.1| DNA recombinase A [Pantoea agglomerans]
          Length = 185

 Score =  286 bits (731), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 133/180 (73%), Positives = 158/180 (87%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+K
Sbjct: 3   LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIASAQRKGKTCAFIDAEHALDPVYAKK 62

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           LGVD++NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+
Sbjct: 63  LGVDIENLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGL 122

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
            AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIR
Sbjct: 123 AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR 182


>gi|331029409|gb|AEC49854.1| recombinase A [Bradyrhizobium sp. SEMIA 696]
          Length = 190

 Score =  286 bits (731), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 137/188 (72%), Positives = 166/188 (88%), Gaps = 1/188 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DKSKAL AALSQI+R +GKG++M+LG      + +E VSSGSLGLDIALG+GG P
Sbjct: 2   EGSSMDKSKALSAALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLP 60

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLIS
Sbjct: 61  KGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLIS 120

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRK
Sbjct: 121 QPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRK 180

Query: 186 LTSSISRS 193
           LT+SI++S
Sbjct: 181 LTASINKS 188


>gi|158632174|gb|ABW75483.1| RecA [Rhizobium multihospitium]
          Length = 161

 Score =  286 bits (731), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 134/161 (83%), Positives = 153/161 (95%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL
Sbjct: 1   VSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+M
Sbjct: 61  DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIG
Sbjct: 121 GDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 161


>gi|146741031|emb|CAJ44539.1| recombinase A [Bradyrhizobium sp. F3b]
          Length = 186

 Score =  286 bits (731), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 137/184 (74%), Positives = 164/184 (89%), Gaps = 1/184 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG      + +E VSSGSLGLDIALG+GG PKGR+
Sbjct: 2   MDKSKALSAALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRV 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 121 GEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180

Query: 190 ISRS 193
           I++S
Sbjct: 181 INKS 184


>gi|67904924|emb|CAF21761.1| recombinase A [Lactobacillus durianis]
          Length = 200

 Score =  285 bits (730), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 135/197 (68%), Positives = 167/197 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  VSSGS+ LD ALG+GG+P+GRIVE+YGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   IATVSSGSIALDDALGVGGYPRGRIVEMYGPESSGKTTVALHAVAEVQKQGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD  YA  LGV++  LL+SQPDTGE+ LEI D L+ SGAVDI+VIDSVAAL PRAEIE
Sbjct: 62  NALDPQYAEALGVNIDALLLSQPDTGEEGLEIADALISSGAVDIVVIDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FYS++RL+IRR   IKD
Sbjct: 182 FYSTIRLEIRRAEQIKD 198


>gi|289190710|gb|ADC93460.1| recombinase A protein [Sinorhizobium americanum]
          Length = 169

 Score =  285 bits (730), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 136/170 (80%), Positives = 158/170 (92%), Gaps = 1/170 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A++QK
Sbjct: 1   KLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAEAQK 59

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DS
Sbjct: 60  KGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDS 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           VAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+
Sbjct: 120 VAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQI 169


>gi|68637343|emb|CAF21800.1| recombinase A [Lactobacillus sharpeae]
          Length = 200

 Score =  285 bits (730), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 131/197 (66%), Positives = 168/197 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++ VS+GSL LD ALG+GGFP+GRI+E+YGPESSGKTTLALH +A+ QK GGT A++DAE
Sbjct: 2   VQTVSTGSLALDEALGVGGFPRGRIIEVYGPESSGKTTLALHAVAEVQKAGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGVD+ +LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEI+
Sbjct: 62  NAMDPKYATNLGVDIDSLLLSQPDTGEQGLEIADTLVASGAVDIVVVDSVAALVPRAEID 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G++G++  G+QARLMSQALRKL+  I+R+K I +FINQ+R K+G+MFG+PETT GG ALK
Sbjct: 122 GEIGDAHVGLQARLMSQALRKLSGQINRTKTIAIFINQIREKVGIMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FY+++RL++RR   IKD
Sbjct: 182 FYATIRLEVRRAEPIKD 198


>gi|298566904|gb|ADI86528.1| recombination protein A [Sinorhizobium fredii]
          Length = 164

 Score =  285 bits (730), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 135/161 (83%), Positives = 152/161 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL
Sbjct: 4   VSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 63

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M
Sbjct: 64  DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 123

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIG
Sbjct: 124 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 164


>gi|29652218|gb|AAO87770.1| RecA [Listeria monocytogenes]
          Length = 205

 Score =  285 bits (730), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 137/205 (66%), Positives = 170/205 (82%), Gaps = 2/205 (0%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESS
Sbjct: 3   ALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESS 60

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI +
Sbjct: 61  GKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAE 120

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +
Sbjct: 121 ALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAI 180

Query: 199 FINQMRMKIGVMFGSPETTTGGNAL 223
           FINQ+R K+GVMFG+PE T GG AL
Sbjct: 181 FINQIREKVGVMFGNPEITPGGRAL 205


>gi|213012360|gb|ACJ38746.1| recombination-repair protein [Vibrio chagasii]
          Length = 188

 Score =  285 bits (730), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 132/186 (70%), Positives = 161/186 (86%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +QK G T  F DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D
Sbjct: 3   IAAAQKVGKTWCFRDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAID 62

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 63  VLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 122

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ E
Sbjct: 123 GVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQAE 182

Query: 268 FDIMYG 273
             I+YG
Sbjct: 183 TQILYG 188


>gi|68637409|emb|CAF21814.1| recombinase A [Oenococcus oeni]
          Length = 200

 Score =  285 bits (730), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 132/197 (67%), Positives = 171/197 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+S+GSL LDIALG+GG+PKGRI+E++GPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   VDVISTGSLKLDIALGVGGYPKGRIIEVFGPESSGKTTVALHAVAEVQKQGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           ++LD+ YA+ LGV++ +LL+SQPDTGEQ LEI D LV SGA+D++VIDSVAAL PRAEIE
Sbjct: 62  NSLDAKYAQALGVNVDDLLLSQPDTGEQGLEIADDLVNSGAIDLLVIDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL  +++R+  I +FINQ+R KIG+MFG+PETT GG ALK
Sbjct: 122 GEMGDSHVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGIMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FYS+VRL++RR   IKD
Sbjct: 182 FYSTVRLEVRRSAQIKD 198


>gi|158631824|gb|ABW75017.1| RecA [Sinorhizobium meliloti]
          Length = 167

 Score =  285 bits (730), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 136/161 (84%), Positives = 152/161 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL
Sbjct: 4   VSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 63

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+M
Sbjct: 64  DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEM 123

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIG
Sbjct: 124 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 164


>gi|164416466|gb|ABY53583.1| recombinase A [Pediococcus damnosus]
 gi|164416468|gb|ABY53584.1| recombinase A [Pediococcus damnosus]
 gi|164416470|gb|ABY53585.1| recombinase A [Pediococcus damnosus]
 gi|164416472|gb|ABY53586.1| recombinase A [Pediococcus damnosus]
 gi|164416474|gb|ABY53587.1| recombinase A [Pediococcus damnosus]
 gi|164416476|gb|ABY53588.1| recombinase A [Pediococcus damnosus]
 gi|164416478|gb|ABY53589.1| recombinase A [Pediococcus damnosus]
 gi|164416480|gb|ABY53590.1| recombinase A [Pediococcus damnosus]
 gi|164416482|gb|ABY53591.1| recombinase A [Pediococcus damnosus]
 gi|164416484|gb|ABY53592.1| recombinase A [Pediococcus damnosus]
 gi|164416486|gb|ABY53593.1| recombinase A [Pediococcus damnosus]
          Length = 194

 Score =  285 bits (730), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 132/194 (68%), Positives = 167/194 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LD ALG+GG+P+GRIVE+YGPESSGKTT+ALH +AQ QK GGT A++DAE+AL
Sbjct: 1   ISTGSLPLDDALGVGGYPRGRIVEVYGPESSGKTTVALHAVAQVQKEGGTAAYIDAENAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA  LGV++ +LL+SQPDTGE+ LEITD LV SGAVD++V+DSVAAL PRAEIEG+M
Sbjct: 61  DPVYAEHLGVNIDDLLLSQPDTGEEGLEITDALVSSGAVDLVVVDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G++  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PE T GG ALKFY+
Sbjct: 121 GDAHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPEVTPGGRALKFYA 180

Query: 228 SVRLDIRRVGSIKD 241
           ++RL IRR   IKD
Sbjct: 181 TIRLKIRRAEQIKD 194


>gi|169883804|gb|ACA97998.1| recombination protein A [Rhizobium mongolense]
 gi|169883806|gb|ACA97999.1| recombination protein A [Rhizobium mongolense]
 gi|169883808|gb|ACA98000.1| recombination protein A [Rhizobium gallicum]
 gi|169883810|gb|ACA98001.1| recombination protein A [Rhizobium gallicum]
          Length = 167

 Score =  285 bits (730), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 135/163 (82%), Positives = 154/163 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL
Sbjct: 5   ISTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 64

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+M
Sbjct: 65  DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEM 124

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIGVM
Sbjct: 125 GDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 167


>gi|6694802|gb|AAF25387.1|AF214740_1 RecA protein [Arthrobacter sp. 'SMCC G970']
          Length = 197

 Score =  285 bits (730), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 134/197 (68%), Positives = 164/197 (83%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD
Sbjct: 1   LGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDAEHALDPEYAAKLGVD 60

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
              LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIEGDMG+S  G+QARL
Sbjct: 61  TDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQARL 120

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ +
Sbjct: 121 MSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQT 180

Query: 239 IKDKDSITGNQTRVKVV 255
           + +     GN+T+ K+V
Sbjct: 181 LXEGADSVGNRTKAKIV 197


>gi|322510285|gb|ADX05528.1| recombination protein A [Sinorhizobium sp. CCBAU 05583]
          Length = 165

 Score =  285 bits (730), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 134/162 (82%), Positives = 152/162 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDAE
Sbjct: 3   IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIE
Sbjct: 63  HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 123 GEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 164


>gi|297528251|gb|ADI46161.1| recombination protein A [Rhizobium sp. CCBAU 03288]
          Length = 173

 Score =  285 bits (730), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 138/171 (80%), Positives = 159/171 (92%), Gaps = 1/171 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 4   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 63  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMS
Sbjct: 123 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMS 173


>gi|297528271|gb|ADI46171.1| recombination protein A [Agrobacterium sp. CCBAU 81325]
          Length = 174

 Score =  285 bits (730), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 139/172 (80%), Positives = 159/172 (92%), Gaps = 1/172 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQ
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQ 173


>gi|213012334|gb|ACJ38733.1| recombination-repair protein [Vibrio chagasii]
          Length = 197

 Score =  285 bits (729), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 133/197 (67%), Positives = 164/197 (83%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G   + + A HALD    +KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQKVGKPASLIAARHALDPFTLKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMYG 273
           NK+A+PFKQ E  I+YG
Sbjct: 181 NKIAAPFKQAETQILYG 197


>gi|146740937|emb|CAJ44529.1| recombinase A [Bradyrhizobium sp. CH2493]
 gi|146741037|emb|CAJ44618.1| recombinase A [Bradyrhizobium elkanii]
          Length = 186

 Score =  285 bits (729), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 136/184 (73%), Positives = 164/184 (89%), Gaps = 1/184 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG      + +E VSSGSLGLDIALG+GG PKGR+
Sbjct: 2   MDKSKALSAALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRV 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 121 GEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180

Query: 190 ISRS 193
           I++S
Sbjct: 181 INKS 184


>gi|306517571|emb|CBO93082.1| DNA recombinase A [Pantoea agglomerans]
          Length = 180

 Score =  285 bits (729), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 133/180 (73%), Positives = 157/180 (87%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+K
Sbjct: 1   LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIASAQRKGKTCAFIDAEHALDPVYAKK 60

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           LGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+
Sbjct: 61  LGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGL 120

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
            AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIR
Sbjct: 121 AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR 180


>gi|68635387|emb|CAF21752.1| recombinase A [Lactobacillus casei]
          Length = 200

 Score =  285 bits (729), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 136/196 (69%), Positives = 167/196 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           + VVSSGSL +D ALG+GGFP+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   VSVVSSGSLAVDDALGVGGFPRGRIVEIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGV++  LL+SQPDTGEQ LEI D LV SGA+DI+VIDSVAAL PRAEIE
Sbjct: 62  NAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG++  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+G++FGSPETT GG ALK
Sbjct: 122 GDMGDAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIK 240
           FY++VRL+IRR   IK
Sbjct: 182 FYATVRLEIRRSEQIK 197


>gi|322510287|gb|ADX05529.1| recombination protein A [Sinorhizobium sp. CCBAU 05643]
          Length = 166

 Score =  285 bits (729), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 134/162 (82%), Positives = 152/162 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDAE
Sbjct: 4   IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIE
Sbjct: 64  HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 124 GEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 165


>gi|269127501|ref|YP_003300871.1| recA protein [Thermomonospora curvata DSM 43183]
 gi|268312459|gb|ACY98833.1| recA protein [Thermomonospora curvata DSM 43183]
          Length = 729

 Score =  285 bits (729), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 140/207 (67%), Positives = 169/207 (81%), Gaps = 2/207 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KALEAAL+QI+R +GKG++M+LG +      +EV+ +GS+ LDIALGIGG P+
Sbjct: 1   MAANDRDKALEAALAQIERQFGKGSVMRLGDEAR--APVEVIPTGSISLDIALGIGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPE SGKT++ALH IA  QK GG  AF+DAEHALD  YA KLGVD   LL+SQ
Sbjct: 59  GRIIEIYGPEGSGKTSIALHAIANVQKNGGIAAFIDAEHALDPEYAAKLGVDTDALLVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI DMLVRSGA+DIIV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDTGEQALEIADMLVRSGAIDIIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKM 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGS 213
           T +IS++K   +FINQ+R KIGVMFG 
Sbjct: 179 TGAISQAKTTAIFINQLREKIGVMFGC 205



 Score =  136 bits (342), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 74/131 (56%), Positives = 102/131 (77%), Gaps = 1/131 (0%)

Query: 208 GVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           GVM   SPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+ RVKVVKNK++ PFK  
Sbjct: 563 GVMVHNSPETTTGGRALKFYASVRLDVRRIETLKDGTEPVGNRVRVKVVKNKVSPPFKVA 622

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
           +FD++YG+GIS  G LIDLGV+  IV K+GAW++++G +LGQG+EN++ FLR N +IA+ 
Sbjct: 623 DFDLLYGQGISREGGLIDLGVEHGIVRKAGAWYTYEGDQLGQGKENARNFLRSNPDIADE 682

Query: 327 IESLLRQNAGL 337
           IE  +++  G+
Sbjct: 683 IEKKIKEKLGI 693


>gi|306517573|emb|CBO93083.1| DNA recombinase A [Pantoea agglomerans]
          Length = 183

 Score =  285 bits (729), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 133/180 (73%), Positives = 157/180 (87%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+K
Sbjct: 1   LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIASAQRKGKTCAFIDAEHALDPVYAKK 60

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           LGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+
Sbjct: 61  LGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGL 120

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
            AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIR
Sbjct: 121 AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR 180


>gi|169883828|gb|ACA98010.1| recombination protein A [Sinorhizobium meliloti]
 gi|169883830|gb|ACA98011.1| recombination protein A [Sinorhizobium meliloti]
          Length = 167

 Score =  285 bits (729), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 137/163 (84%), Positives = 153/163 (93%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLD+ALGIGG  KGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL
Sbjct: 5   VSTGSLGLDLALGIGGLRKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 64

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+M
Sbjct: 65  DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEM 124

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 125 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 167


>gi|68637261|emb|CAF21780.1| recombinase A [Lactobacillus mali]
          Length = 200

 Score =  285 bits (729), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 134/197 (68%), Positives = 165/197 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  VSSGSL LD ALG+GG+P+GRIVE+YGPESSGKTT+ALH +A+ Q  GG  A++DAE
Sbjct: 2   ISTVSSGSLALDEALGVGGYPRGRIVEVYGPESSGKTTVALHAVAEVQSNGGVAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD  YA KLGV++  LL+SQPDTGEQ LEI D LV SGA+DI+VIDSVAAL PRAEIE
Sbjct: 62  NALDPAYATKLGVNIDELLLSQPDTGEQGLEIADALVSSGAIDIVVIDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PE T GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTINKTKTIAIFINQIREKVGVMFGNPEITPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FYS+VRL++RR   IKD
Sbjct: 182 FYSTVRLEVRRAEQIKD 198


>gi|306517569|emb|CBO93080.1| DNA recombinase A [Pantoea agglomerans]
          Length = 181

 Score =  285 bits (729), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 133/180 (73%), Positives = 157/180 (87%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+K
Sbjct: 2   LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIASAQRKGKTCAFIDAEHALDPVYAKK 61

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           LGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+
Sbjct: 62  LGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGL 121

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
            AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIR
Sbjct: 122 AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR 181


>gi|329770668|emb|CBX32277.1| recombinase A [Bradyrhizobium sp. BR 10109]
          Length = 180

 Score =  285 bits (729), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 139/179 (77%), Positives = 161/179 (89%), Gaps = 1/179 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG      + IE VSSGSLGLDIALGIGG PKGRI
Sbjct: 3   MDKSKALAAALSQIERQFGKGSVMKLGKSDRSMD-IEAVSSGSLGLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ +LLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDDLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+
Sbjct: 122 GEQALEICDTLVRSGAVDVMVIDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTA 180


>gi|255040339|gb|ACT99982.1| recombinase A [Lactobacillus gasseri]
 gi|255040341|gb|ACT99983.1| recombinase A [Lactobacillus sp. BL263]
 gi|255040347|gb|ACT99986.1| recombinase A [Lactobacillus sp. BL303]
 gi|255040351|gb|ACT99988.1| recombinase A [Lactobacillus johnsonii]
          Length = 220

 Score =  285 bits (729), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 130/205 (63%), Positives = 170/205 (82%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  + SGSL LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 6   ISTIPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 65

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+
Sbjct: 66  NAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEID 125

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG+S  G+QARLMSQALRKL+ +IS++K I VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 126 GDMGDSHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGVMFGNPETTPGGRALK 185

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQ 249
           FYS++RL++RR   IK    + GN+
Sbjct: 186 FYSTIRLEVRRAEQIKQGSDVIGNR 210


>gi|118767307|gb|ABL11489.1| RecA [Rhizobium sp. PEVF03]
          Length = 178

 Score =  285 bits (729), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 137/172 (79%), Positives = 160/172 (93%), Gaps = 1/172 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKT
Sbjct: 8   QIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKT 66

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LV
Sbjct: 67  TLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLV 126

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           RSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 127 RSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 178


>gi|297528269|gb|ADI46170.1| recombination protein A [Rhizobium sp. CCBAU 65248]
          Length = 173

 Score =  285 bits (729), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 140/172 (81%), Positives = 158/172 (91%), Gaps = 1/172 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQ
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQ 173


>gi|213012342|gb|ACJ38737.1| recombination-repair protein [Vibrio rotiferianus]
          Length = 182

 Score =  285 bits (729), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 127/182 (69%), Positives = 160/182 (87%)

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+
Sbjct: 1   QREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVV 60

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMF
Sbjct: 61  DSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMF 120

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IM
Sbjct: 121 GNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIM 180

Query: 272 YG 273
           YG
Sbjct: 181 YG 182


>gi|255040343|gb|ACT99984.1| recombinase A [Lactobacillus sp. BL301]
          Length = 210

 Score =  285 bits (729), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 130/205 (63%), Positives = 170/205 (82%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  + SGSL LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 5   ISTIPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 64

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+
Sbjct: 65  NAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEID 124

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG+S  G+QARLMSQALRKL+ +IS++K I VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 125 GDMGDSHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGVMFGNPETTPGGRALK 184

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQ 249
           FYS++RL++RR   IK    + GN+
Sbjct: 185 FYSTIRLEVRRAEQIKQGSDVIGNR 209


>gi|68637156|emb|CAF21759.1| recombinase A [Lactobacillus cypricasei]
          Length = 200

 Score =  285 bits (729), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 133/197 (67%), Positives = 166/197 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  + SGSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ Q  GGT A++DAE
Sbjct: 2   ISTIPSGSLALDEALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQAQGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD +YA  LGV++  LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEIE
Sbjct: 62  NALDPVYASALGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FY+++RL+IRR   IKD
Sbjct: 182 FYATIRLEIRRAEQIKD 198


>gi|331029417|gb|AEC49858.1| recombinase A [Bradyrhizobium sp. SEMIA 6154]
          Length = 186

 Score =  285 bits (729), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 136/184 (73%), Positives = 164/184 (89%), Gaps = 1/184 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG      + +E VSSGSLGLDIALG+GG PKGR+
Sbjct: 2   MDKSKALXAALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRV 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 121 GEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180

Query: 190 ISRS 193
           I++S
Sbjct: 181 INKS 184


>gi|146740925|emb|CAJ44523.1| recombinase A [Bradyrhizobium sp. C4]
          Length = 186

 Score =  285 bits (729), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 136/184 (73%), Positives = 164/184 (89%), Gaps = 1/184 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSK L AALSQI+R +GKG++M+LG      + +E VSSGSLGLDIALGIGG PKGR+
Sbjct: 2   MDKSKPLAAALSQIERQFGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRV 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 121 GEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180

Query: 190 ISRS 193
           I++S
Sbjct: 181 INKS 184


>gi|146740923|emb|CAJ44522.1| recombinase A [Bradyrhizobium sp. BLUT1]
          Length = 186

 Score =  285 bits (729), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 138/184 (75%), Positives = 163/184 (88%), Gaps = 1/184 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG +M+LG      + +E VSSGSLGLDIALGIGG PKGR+
Sbjct: 2   MDKSKALAAALSQIERQFGKGLVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRV 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 121 GEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180

Query: 190 ISRS 193
           I++S
Sbjct: 181 INKS 184


>gi|322510289|gb|ADX05530.1| recombination protein A [Sinorhizobium sp. CCBAU 05593]
          Length = 164

 Score =  285 bits (729), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 134/162 (82%), Positives = 152/162 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDAE
Sbjct: 3   IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIE
Sbjct: 63  HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 123 GEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 164


>gi|325650818|emb|CBY89592.1| RecA protein [Rhizobium leguminosarum]
          Length = 175

 Score =  285 bits (729), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 136/176 (77%), Positives = 162/176 (92%), Gaps = 1/176 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTT
Sbjct: 1   IERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVR
Sbjct: 60  LALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           SGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S  +++
Sbjct: 120 SGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNTMVI 175


>gi|81294630|emb|CAI71756.1| recombinase A [Bradyrhizobium sp. 1S20]
          Length = 186

 Score =  285 bits (729), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 137/184 (74%), Positives = 164/184 (89%), Gaps = 1/184 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG      + +E +SSGSLGLDIALGIGG PKGR+
Sbjct: 2   MDKSKALAAALSQIERQFGKGSVMKLGKNDRSMD-VESISSGSLGLDIALGIGGLPKGRV 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 121 GEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180

Query: 190 ISRS 193
           I++S
Sbjct: 181 INKS 184


>gi|118767303|gb|ABL11487.1| RecA [Rhizobium leguminosarum bv. viciae]
          Length = 174

 Score =  285 bits (729), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 137/173 (79%), Positives = 160/173 (92%), Gaps = 1/173 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           SQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGK
Sbjct: 1   SQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGK 59

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD L
Sbjct: 60  TTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTL 119

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           VRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKL +SIS+S
Sbjct: 120 VRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLXASISKS 172


>gi|118767331|gb|ABL11501.1| RecA [Rhizobium phaseoli]
          Length = 173

 Score =  285 bits (729), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 138/172 (80%), Positives = 158/172 (91%), Gaps = 1/172 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI+R +GKG+IM+LGS   + E IE +S+GSLGLDIALG+ G PKGRI+EIYGPESSGKT
Sbjct: 1   QIERSFGKGSIMKLGSNEKVIE-IETISTGSLGLDIALGVXGLPKGRIIEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LV
Sbjct: 60  TLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           RSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 RSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 171


>gi|209571809|gb|ACI62757.1| recombinase A [Bradyrhizobium yuanmingense]
 gi|242263496|gb|ACS89044.1| recombinase A [Bradyrhizobium yuanmingense]
          Length = 185

 Score =  285 bits (728), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 137/186 (73%), Positives = 165/186 (88%), Gaps = 1/186 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AALSQI+R +GKG++M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYG
Sbjct: 1   ALAAALSQIERQFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S 
Sbjct: 120 EICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSN 179

Query: 195 CILVFI 200
            +++FI
Sbjct: 180 TMVIFI 185


>gi|297528249|gb|ADI46160.1| recombination protein A [Rhizobium sp. CCBAU 03287]
          Length = 173

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 138/171 (80%), Positives = 158/171 (92%), Gaps = 1/171 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LG+  S+ E +E +S+GSL LDIALGIGG PKGRI
Sbjct: 4   VDKSKALEAALSQIERSFGKGSIMKLGANESVIE-VETISTGSLSLDIALGIGGLPKGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 63  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMS
Sbjct: 123 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMS 173


>gi|9909580|emb|CAC04277.1| RecA protein [Agrobacterium tumefaciens]
          Length = 171

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 140/172 (81%), Positives = 158/172 (91%), Gaps = 1/172 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRIVEIYGP
Sbjct: 1   LEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRIVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           ITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT
Sbjct: 120 ITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLT 171


>gi|298566894|gb|ADI86523.1| recombination protein A [Sinorhizobium sp. CCBAU 05672]
          Length = 160

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 133/160 (83%), Positives = 152/160 (95%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A++QK GG CAFVDAEHAL
Sbjct: 1   VSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAEAQKKGGICAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M
Sbjct: 61  DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKI
Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKI 160


>gi|169883818|gb|ACA98005.1| recombination protein A [Mesorhizobium sp. CCBAU 01550]
 gi|169883820|gb|ACA98006.1| recombination protein A [Mesorhizobium sp. CCBAU 25300]
 gi|169883822|gb|ACA98007.1| recombination protein A [Mesorhizobium sp. CCBAU 45265]
 gi|169883824|gb|ACA98008.1| recombination protein A [Mesorhizobium sp. CCBAU 45272]
 gi|169883844|gb|ACA98018.1| recombination protein A [Mesorhizobium sp. CCBAU 25282]
          Length = 167

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 132/163 (80%), Positives = 154/163 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHAL
Sbjct: 5   VPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHAL 64

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+M
Sbjct: 65  DPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 124

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G++LPG+QARLMSQALRKLT+SISRS  +++FINQ+RMKIGVM
Sbjct: 125 GDALPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKIGVM 167


>gi|307343442|emb|CBJ18162.1| recombinase A [Micromonospora sp. SR2]
          Length = 183

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 133/183 (72%), Positives = 158/183 (86%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH++A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHSVASAQRLGGIAAFIDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDAMLVSQPDTGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
            G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRL
Sbjct: 121 VGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRL 180

Query: 232 DIR 234
           D+R
Sbjct: 181 DVR 183


>gi|195542202|gb|ACF98311.1| RecA [Rhizobium yanglingense]
          Length = 169

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 135/164 (82%), Positives = 154/164 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 5   IETISTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 64

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE
Sbjct: 65  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 124

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIG
Sbjct: 125 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIG 168


>gi|331029407|gb|AEC49853.1| recombinase A [Bradyrhizobium elkanii]
          Length = 188

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 137/183 (74%), Positives = 163/183 (89%), Gaps = 1/183 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG      + +E VSSGSLGLDIALG+GG PKGRI
Sbjct: 7   MDKSKALXAALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRI 65

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 66  VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 125

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 126 GEQALEIADTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 185

Query: 190 ISR 192
           I++
Sbjct: 186 INK 188


>gi|169883221|gb|ACA97520.1| recombination protein RecA [Bradyrhizobium genosp. SA-3]
          Length = 187

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 139/181 (76%), Positives = 162/181 (89%), Gaps = 1/181 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG      + IE VSSGSLGLDIALGIGG PKGRI
Sbjct: 8   MDKSKALAAALSQIERQFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRI 66

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 67  VEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 126

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 127 GEQALEICDTLVRSGAVDVMVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 186

Query: 190 I 190
           I
Sbjct: 187 I 187


>gi|291246096|gb|ADD85176.1| RecA [Borrelia recurrentis]
          Length = 203

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 132/203 (65%), Positives = 173/203 (85%), Gaps = 2/203 (0%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           +GIGG+P+GR+VEI+GPESSGKTTL L  IA+ QKTGG  AF+DAEHALD +YAR LGV+
Sbjct: 1   IGIGGYPRGRVVEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVN 60

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +  L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAAL P+AEI+G+MG++  G+QARL
Sbjct: 61  INELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGLQARL 120

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MS+ALRK+T+ +S+S   ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V  
Sbjct: 121 MSKALRKITAILSKSNACIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKVEQ 180

Query: 239 I--KDKDSITGNQTRVKVVKNKM 259
           +     D++ GN+ RVKVVKNK+
Sbjct: 181 VIGSSSDNVIGNKIRVKVVKNKV 203


>gi|307343366|emb|CBJ18124.1| recombinase A [Polymorphospora rubra]
          Length = 187

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 131/187 (70%), Positives = 160/187 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VE+YGPESSGKTT+ALH +A +Q+ GG  AF+DAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEVYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNSTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVRLDIR 234
           SVRLD+R
Sbjct: 181 SVRLDVR 187


>gi|68637353|emb|CAF21802.1| recombinase A [Lactobacillus ingluviei]
          Length = 200

 Score =  284 bits (727), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 130/197 (65%), Positives = 169/197 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +  VSSGSL +D ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ Q+ GGT A++DAE
Sbjct: 2   VATVSSGSLAIDEALGVGGYPRGRIIEMYGPESSGKTTVALHAVAEVQQQGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA+ LGVD+ NLL+SQPDTGEQ L+I D L+ SGA+DI+V+DSVAAL PRAEIE
Sbjct: 62  NAMDPEYAKALGVDIDNLLLSQPDTGEQGLQIADALISSGAIDIVVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTINKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FYS++RL+IRR   IKD
Sbjct: 182 FYSTIRLEIRRGEPIKD 198


>gi|217037930|gb|ACJ76433.1| RecA [Bradyrhizobium sp. STM 3569]
          Length = 179

 Score =  284 bits (727), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 137/180 (76%), Positives = 161/180 (89%), Gaps = 1/180 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKAL AALSQI+R +GKG++M+LG      + +E VSSGSLGLDIALG+GG PKGRIVE
Sbjct: 1   KSKALSAALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSGAVD++V+DSVAAL PRAE+EG+MGE+LPG+QARLMSQALRKLT+SI+
Sbjct: 120 QALEICDTLVRSGAVDVLVVDSVAALVPRAELEGEMGEALPGLQARLMSQALRKLTASIN 179


>gi|164416351|gb|ABY53531.1| recombinase A [Pediococcus parvulus]
 gi|164416353|gb|ABY53532.1| recombinase A [Pediococcus parvulus]
 gi|164416355|gb|ABY53533.1| recombinase A [Pediococcus parvulus]
 gi|164416357|gb|ABY53534.1| recombinase A [Pediococcus parvulus]
 gi|164416359|gb|ABY53535.1| recombinase A [Pediococcus parvulus]
 gi|164416361|gb|ABY53536.1| recombinase A [Pediococcus parvulus]
 gi|164416363|gb|ABY53537.1| recombinase A [Pediococcus parvulus]
 gi|164416365|gb|ABY53538.1| recombinase A [Pediococcus parvulus]
          Length = 194

 Score =  284 bits (727), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 130/193 (67%), Positives = 167/193 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GSL LD ALG+GG+P+GRIVE+YGPESSGKTT+ALH +AQ QK GGT A++DAE+AL
Sbjct: 2   MPTGSLALDDALGVGGYPRGRIVEVYGPESSGKTTVALHAVAQVQKEGGTAAYIDAENAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA  LGV++ +LL+SQPDTGE+ LEITD LV SGAVD++V+DSVAAL PRAEIEG+M
Sbjct: 62  DPVYAEHLGVNIDDLLLSQPDTGEEGLEITDALVSSGAVDLVVVDSVAALVPRAEIEGEM 121

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G++  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+
Sbjct: 122 GDAHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYA 181

Query: 228 SVRLDIRRVGSIK 240
           ++RL++RR   IK
Sbjct: 182 TIRLEVRRAEQIK 194


>gi|68637339|emb|CAF21799.1| recombinase A [Lactobacillus sakei subsp. sakei]
          Length = 200

 Score =  284 bits (727), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 133/197 (67%), Positives = 168/197 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +  VSSGSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   VSTVSSGSLALDEALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGV++ +LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEIE
Sbjct: 62  NAMDPKYATALGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDILVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PE T GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPEVTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FYS+VRL++RR  +IK+
Sbjct: 182 FYSTVRLEVRRAETIKN 198


>gi|215446988|ref|ZP_03433740.1| recombinase A [Mycobacterium tuberculosis T85]
 gi|289758864|ref|ZP_06518242.1| recombinase A [Mycobacterium tuberculosis T85]
 gi|289714428|gb|EFD78440.1| recombinase A [Mycobacterium tuberculosis T85]
          Length = 729

 Score =  284 bits (727), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 137/205 (66%), Positives = 170/205 (82%), Gaps = 1/205 (0%)

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPD
Sbjct: 1   MIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPD 60

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T 
Sbjct: 61  TGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTG 120

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD  +  GN
Sbjct: 121 ALNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGN 180

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYG 273
           +TRVKVVKNK  +   ++ FD + G
Sbjct: 181 RTRVKVVKNKCLAEGTRI-FDPVTG 204



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 65/86 (75%)

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VV +  + PFKQ EFDI+YG+GIS  G LID+GV   ++ KSGAWF+++G++LGQG+EN+
Sbjct: 626 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENA 685

Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339
           + FL EN ++A+ IE  +++  G+ A
Sbjct: 686 RNFLVENADVADEIEKKIKEKLGIGA 711


>gi|307343346|emb|CBJ18114.1| recombinase A [Micromonospora mirobrigensis]
          Length = 184

 Score =  284 bits (727), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 134/184 (72%), Positives = 158/184 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   LL+SQPDTGEQALEITDMLVRSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPDYAKALGVDTDALLVSQPDTGEQALEITDMLVRSGAIDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVRL 231
           SVRL
Sbjct: 181 SVRL 184


>gi|291246117|gb|ADD85183.1| RecA [Borrelia recurrentis]
          Length = 218

 Score =  284 bits (727), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 133/215 (61%), Positives = 183/215 (85%), Gaps = 1/215 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+++++G +  + + +E + SG + LD A+GIGG+P+GR+VEI+GPESSGKT
Sbjct: 4   QIEKDFGKGSLIKMG-ESPVGKYLESIPSGFILLDEAIGIGGYPRGRVVEIFGPESSGKT 62

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QKTGG  AF+DAEHALD +YAR LGV++  L +SQPDTGEQAL+I + L+
Sbjct: 63  TLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQPDTGEQALDIAEYLI 122

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG VD+IV+DSVAAL P+AEI+G+MG++  G+QARLMS+ALRK+T+ +S+S   ++FIN
Sbjct: 123 RSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGLQARLMSKALRKITAILSKSNACIMFIN 182

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           Q+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V
Sbjct: 183 QIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKV 217


>gi|169883177|gb|ACA97498.1| recombination protein RecA [Bradyrhizobium genosp. SA-3]
 gi|169883179|gb|ACA97499.1| recombination protein RecA [Bradyrhizobium genosp. SA-3]
 gi|169883181|gb|ACA97500.1| recombination protein RecA [Bradyrhizobium genosp. SA-4 str. CB756]
 gi|169883183|gb|ACA97501.1| recombination protein RecA [Bradyrhizobium genosp. SA-3]
 gi|169883185|gb|ACA97502.1| recombination protein RecA [Bradyrhizobium genosp. SA-3]
 gi|169883187|gb|ACA97503.1| recombination protein RecA [Bradyrhizobium genosp. SA-3]
 gi|169883199|gb|ACA97509.1| recombination protein RecA [Bradyrhizobium genosp. SA-3]
 gi|169883207|gb|ACA97513.1| recombination protein RecA [Bradyrhizobium yuanmingense]
 gi|169883215|gb|ACA97517.1| recombination protein RecA [Bradyrhizobium genosp. SA-3]
 gi|169883219|gb|ACA97519.1| recombination protein RecA [Bradyrhizobium genosp. SA-3]
          Length = 187

 Score =  284 bits (727), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 139/185 (75%), Positives = 164/185 (88%), Gaps = 1/185 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DKSKAL AALSQI+R +GKG++M+LG      + IE VSSGSLGLDIALGIGG P
Sbjct: 4   EGSSMDKSKALAAALSQIERQFGKGSVMKLGKSDRSMD-IEAVSSGSLGLDIALGIGGLP 62

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLIS
Sbjct: 63  KGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLIS 122

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRK
Sbjct: 123 QPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRK 182

Query: 186 LTSSI 190
           LT+SI
Sbjct: 183 LTASI 187


>gi|213950708|gb|ACJ54599.1| recombination protein A [Sinorhizobium fredii]
          Length = 174

 Score =  284 bits (727), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 140/173 (80%), Positives = 156/173 (90%), Gaps = 1/173 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TI
Sbjct: 3   KGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTI 61

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 62  AEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDV 121

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           +V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C   F N
Sbjct: 122 LVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNCHCGFFN 174


>gi|169883217|gb|ACA97518.1| recombination protein RecA [Bradyrhizobium genosp. SA-2]
          Length = 187

 Score =  284 bits (726), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 139/185 (75%), Positives = 164/185 (88%), Gaps = 1/185 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DKSKAL AALSQI+R +GKG++M+LG      + IE VSSGSLGLDIALGIGG P
Sbjct: 4   EGSSMDKSKALAAALSQIERQFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLP 62

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLIS
Sbjct: 63  KGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLIS 122

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRK
Sbjct: 123 QPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRK 182

Query: 186 LTSSI 190
           LT+SI
Sbjct: 183 LTASI 187


>gi|291246092|gb|ADD85174.1| RecA [Borrelia recurrentis]
          Length = 221

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 133/215 (61%), Positives = 183/215 (85%), Gaps = 1/215 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+++++G +  + + +E + SG + LD A+GIGG+P+GR+VEI+GPESSGKT
Sbjct: 1   QIEKDFGKGSLIKMG-ESPVGKYLESIPSGFILLDEAIGIGGYPRGRVVEIFGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QKTGG  AF+DAEHALD +YAR LGV++  L +SQPDTGEQAL+I + L+
Sbjct: 60  TLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQPDTGEQALDIAEYLI 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG VD+IV+DSVAAL P+AEI+G+MG++  G+QARLMS+ALRK+T+ +S+S   ++FIN
Sbjct: 120 RSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGLQARLMSKALRKITAILSKSNACIMFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           Q+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V
Sbjct: 180 QIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKV 214


>gi|219821015|gb|ACL37628.1| recombinase A [Listeria monocytogenes]
 gi|219821017|gb|ACL37629.1| recombinase A [Listeria monocytogenes]
 gi|219821019|gb|ACL37630.1| recombinase A [Listeria monocytogenes]
 gi|219821021|gb|ACL37631.1| recombinase A [Listeria monocytogenes]
 gi|219821023|gb|ACL37632.1| recombinase A [Listeria monocytogenes]
 gi|219821025|gb|ACL37633.1| recombinase A [Listeria monocytogenes]
 gi|219821027|gb|ACL37634.1| recombinase A [Listeria monocytogenes]
 gi|219821029|gb|ACL37635.1| recombinase A [Listeria monocytogenes]
 gi|219821031|gb|ACL37636.1| recombinase A [Listeria monocytogenes]
 gi|219821033|gb|ACL37637.1| recombinase A [Listeria monocytogenes]
 gi|219821035|gb|ACL37638.1| recombinase A [Listeria monocytogenes]
 gi|219821037|gb|ACL37639.1| recombinase A [Listeria monocytogenes]
 gi|219821039|gb|ACL37640.1| recombinase A [Listeria monocytogenes]
 gi|219821041|gb|ACL37641.1| recombinase A [Listeria monocytogenes]
 gi|219821043|gb|ACL37642.1| recombinase A [Listeria monocytogenes]
 gi|219821045|gb|ACL37643.1| recombinase A [Listeria monocytogenes]
 gi|219821047|gb|ACL37644.1| recombinase A [Listeria monocytogenes]
 gi|219821049|gb|ACL37645.1| recombinase A [Listeria monocytogenes]
 gi|219821051|gb|ACL37646.1| recombinase A [Listeria monocytogenes]
 gi|219821053|gb|ACL37647.1| recombinase A [Listeria monocytogenes]
          Length = 203

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 136/205 (66%), Positives = 170/205 (82%), Gaps = 2/205 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGP
Sbjct: 1   LDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK 
Sbjct: 119 IAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKT 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGG 220
           I +FINQ+R K+GVMFG+PE T GG
Sbjct: 179 IAIFINQIREKVGVMFGNPEITPGG 203


>gi|29652260|gb|AAO87791.1| RecA [Listeria monocytogenes]
          Length = 204

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 136/205 (66%), Positives = 170/205 (82%), Gaps = 2/205 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YG
Sbjct: 2   ALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQAL
Sbjct: 60  PESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK
Sbjct: 120 EIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSK 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTG 219
            I +FINQ+R K+GVMFG+PE T G
Sbjct: 180 TIAIFINQIREKVGVMFGNPEITPG 204


>gi|331029411|gb|AEC49855.1| recombinase A [Bradyrhizobium sp. SEMIA 6002]
 gi|331029413|gb|AEC49856.1| recombinase A [Bradyrhizobium sp. SEMIA 6144]
          Length = 185

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 139/185 (75%), Positives = 164/185 (88%), Gaps = 1/185 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DKSKAL AALSQI+R +GKG++M+LG      + IE VSSGSLGLDIALGIGG P
Sbjct: 2   EGSSMDKSKALAAALSQIERQFGKGSVMKLGKSDRSMD-IEAVSSGSLGLDIALGIGGLP 60

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLIS
Sbjct: 61  KGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLIS 120

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRK
Sbjct: 121 QPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRK 180

Query: 186 LTSSI 190
           LT+SI
Sbjct: 181 LTASI 185


>gi|291246131|gb|ADD85190.1| RecA [Borrelia recurrentis]
          Length = 224

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 133/215 (61%), Positives = 183/215 (85%), Gaps = 1/215 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+++++G +  + + +E + SG + LD A+GIGG+P+GR+VEI+GPESSGKT
Sbjct: 4   QIEKDFGKGSLIKMG-ESPVGKYLESIPSGFILLDEAIGIGGYPRGRVVEIFGPESSGKT 62

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QKTGG  AF+DAEHALD +YAR LGV++  L +SQPDTGEQAL+I + L+
Sbjct: 63  TLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQPDTGEQALDIAEYLI 122

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG VD+IV+DSVAAL P+AEI+G+MG++  G+QARLMS+ALRK+T+ +S+S   ++FIN
Sbjct: 123 RSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGLQARLMSKALRKITAILSKSNACIMFIN 182

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           Q+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V
Sbjct: 183 QIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKV 217


>gi|169883189|gb|ACA97504.1| recombination protein RecA [Bradyrhizobium genosp. SA-1]
 gi|169883191|gb|ACA97505.1| recombination protein RecA [Bradyrhizobium genosp. SA-1]
 gi|169883193|gb|ACA97506.1| recombination protein RecA [Bradyrhizobium genosp. SA-1]
 gi|169883195|gb|ACA97507.1| recombination protein RecA [Bradyrhizobium genosp. SA-1]
 gi|169883197|gb|ACA97508.1| recombination protein RecA [Bradyrhizobium genosp. SA-1]
 gi|169883201|gb|ACA97510.1| recombination protein RecA [Bradyrhizobium yuanmingense]
 gi|169883203|gb|ACA97511.1| recombination protein RecA [Bradyrhizobium yuanmingense]
 gi|169883209|gb|ACA97514.1| recombination protein RecA [Bradyrhizobium yuanmingense]
 gi|169883211|gb|ACA97515.1| recombination protein RecA [Bradyrhizobium yuanmingense]
 gi|169883213|gb|ACA97516.1| recombination protein RecA [Bradyrhizobium yuanmingense]
          Length = 187

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 138/181 (76%), Positives = 162/181 (89%), Gaps = 1/181 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG      + IE VSSGSLGLDIALGIGG PKGRI
Sbjct: 8   MDKSKALAAALSQIERQFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRI 66

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 67  VEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 126

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 127 GEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 186

Query: 190 I 190
           I
Sbjct: 187 I 187


>gi|29652043|gb|AAO87684.1| RecA [Listeria monocytogenes]
 gi|29652128|gb|AAO87725.1| RecA [Listeria monocytogenes]
          Length = 204

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 136/204 (66%), Positives = 169/204 (82%), Gaps = 2/204 (0%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESS
Sbjct: 3   ALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESS 60

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI +
Sbjct: 61  GKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAE 120

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +
Sbjct: 121 ALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAI 180

Query: 199 FINQMRMKIGVMFGSPETTTGGNA 222
           FINQ+R K+GVMFG+PE T GG A
Sbjct: 181 FINQIREKVGVMFGNPEITPGGRA 204


>gi|291246103|gb|ADD85178.1| RecA [Borrelia recurrentis]
          Length = 219

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 133/215 (61%), Positives = 183/215 (85%), Gaps = 1/215 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+++++G +  + + +E + SG + LD A+GIGG+P+GR+VEI+GPESSGKT
Sbjct: 3   QIEKDFGKGSLIKMG-ESPVGKYLESIPSGFILLDEAIGIGGYPRGRVVEIFGPESSGKT 61

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QKTGG  AF+DAEHALD +YAR LGV++  L +SQPDTGEQAL+I + L+
Sbjct: 62  TLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQPDTGEQALDIAEYLI 121

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG VD+IV+DSVAAL P+AEI+G+MG++  G+QARLMS+ALRK+T+ +S+S   ++FIN
Sbjct: 122 RSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGLQARLMSKALRKITAILSKSNACIMFIN 181

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           Q+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V
Sbjct: 182 QIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKV 216


>gi|110003029|emb|CAJ57801.1| recombinase A [Bradyrhizobium japonicum]
          Length = 183

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 136/182 (74%), Positives = 163/182 (89%), Gaps = 1/182 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKAL AALSQI+R +GKG++M+LG      + +E VSSGSLGLDIALGIGG PKGR+VE
Sbjct: 1   KSKALAAALSQIERQFGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI+
Sbjct: 120 QALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASIN 179

Query: 192 RS 193
           +S
Sbjct: 180 KS 181


>gi|6694822|gb|AAF25407.1|AF214760_1 RecA protein [Arthrobacter sp. 'SMCC G954']
          Length = 194

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 134/194 (69%), Positives = 162/194 (83%)

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD   LL+SQPD
Sbjct: 1   VVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPEYAAKLGVDTDALLVSQPD 60

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DMLV SG++DI+VIDSVAAL PRAEIEGDMG+S  G+QARLMSQALRK+T 
Sbjct: 61  TGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKITG 120

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+     GN
Sbjct: 121 RLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIQTLKEGADSVGN 180

Query: 249 QTRVKVVKNKMASP 262
           +T+ K+VKNKMA P
Sbjct: 181 RTKAKIVKNKMAPP 194


>gi|68637153|emb|CAF21758.1| recombinase A [Lactobacillus curvatus]
          Length = 200

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 133/197 (67%), Positives = 168/197 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +  VSSGSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   VSTVSSGSLALDEALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGV++ +LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEIE
Sbjct: 62  NAMDPKYATALGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDILVVDSVAALMPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PE T GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPEVTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FYS+VRL++RR  +IK+
Sbjct: 182 FYSTVRLEVRRAETIKN 198


>gi|325512795|gb|ADZ23586.1| RecA [Sinorhizobium fredii]
          Length = 159

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 135/159 (84%), Positives = 150/159 (94%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IY
Sbjct: 1   SLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           ARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SL
Sbjct: 61  ARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSL 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           PGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 121 PGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 159


>gi|81294644|emb|CAI71763.1| recombinase A [Bradyrhizobium sp. WSM1735]
 gi|81294648|emb|CAI71765.1| recombinase A [Bradyrhizobium sp. WSM1790]
          Length = 186

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 134/184 (72%), Positives = 164/184 (89%), Gaps = 1/184 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KAL AALSQI+R +GKG++M+LG      + +E VSSGSLGLDIALG+GG PKGR+
Sbjct: 2   MDKTKALSAALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRV 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 121 GEQALEICDTLVRSGAIDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180

Query: 190 ISRS 193
           I++S
Sbjct: 181 INKS 184


>gi|254055243|gb|ACT64221.1| RecA [Burkholderia cepacia]
          Length = 187

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 136/188 (72%), Positives = 165/188 (87%), Gaps = 1/188 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMF 211
           RMKIGVMF
Sbjct: 180 RMKIGVMF 187


>gi|306517551|emb|CBO93065.1| DNA recombinase A [Pantoea stewartii subsp. stewartii]
          Length = 184

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 132/180 (73%), Positives = 157/180 (87%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LDIALG GG P GRIVEIYGPE+SGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+K
Sbjct: 2   LDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKK 61

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           LGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+
Sbjct: 62  LGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGL 121

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
            AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIR
Sbjct: 122 AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR 181


>gi|289812935|gb|ADD20928.1| recombinase A [Rhizobium sp. CCBAU 51330]
          Length = 160

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 133/160 (83%), Positives = 152/160 (95%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL
Sbjct: 1   VSTGSLNLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+M
Sbjct: 61  DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           G+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKI
Sbjct: 121 GDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKI 160


>gi|255040337|gb|ACT99981.1| recombinase A [Lactobacillus acidophilus]
          Length = 220

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 128/205 (62%), Positives = 170/205 (82%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  V +GSL LD A+G+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 6   ISTVPTGSLALDAAIGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 65

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIE
Sbjct: 66  NAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIE 125

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 126 GEMGDAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 185

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQ 249
           FYS+VRL++RR   IK    + GN+
Sbjct: 186 FYSTVRLEVRRAEQIKQSGDVLGNR 210


>gi|68637378|emb|CAF21808.1| recombinase A [Leuconostoc pseudomesenteroides]
          Length = 200

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 134/197 (68%), Positives = 165/197 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E + SGS+ LDIALG+GG+PKGRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   VETIPSGSVKLDIALGVGGYPKGRIIEVYGPESSGKTTIALHAVAEVQKQGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD  YA  LGV    LL+SQPDTGEQ LEI D LV+SGAVD+IVIDSVAAL PRAEIE
Sbjct: 62  NALDVKYAEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDMIVIDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL  +++R+  I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FYS+VRL++RR   IKD
Sbjct: 182 FYSTVRLEVRRSTQIKD 198


>gi|255040353|gb|ACT99989.1| recombinase A [Lactobacillus johnsonii]
          Length = 220

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 130/205 (63%), Positives = 169/205 (82%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  + SGSL LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 6   ISTIPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 65

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+
Sbjct: 66  NATDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEID 125

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG+S  G+QARLMSQALRKL+ +IS++K I VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 126 GDMGDSHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGVMFGNPETTPGGRALK 185

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQ 249
           FYS++RL++RR   IK    + GN+
Sbjct: 186 FYSTIRLEVRRAEQIKQGSDVIGNR 210


>gi|325512777|gb|ADZ23577.1| RecA [Bradyrhizobium sp. CCBAU 25437]
          Length = 180

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 135/181 (74%), Positives = 162/181 (89%), Gaps = 1/181 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 120 DVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 179

Query: 207 I 207
           I
Sbjct: 180 I 180


>gi|159149118|gb|ABW91115.1| RecA [Rhodobaca bogoriensis]
          Length = 183

 Score =  283 bits (725), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 135/184 (73%), Positives = 161/184 (87%), Gaps = 1/184 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG    + E IE +S+GSLGLDIALGIGG PKGR++EIYGPESSGKTTL LH
Sbjct: 1   FGKGSMMKLGGDNPVAE-IEAISTGSLGLDIALGIGGLPKGRVIEIYGPESSGKTTLTLH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            +A++QK GG CAFVDAEHALD  YARKLGVDL  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  AVAEAQKKGGVCAFVDAEHALDPQYARKLGVDLDELLISQPDTGEQALEIVDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++V+DSVAALTP++E+EGDMG+S  G+ ARLMSQA+RKLTSSI+RS C+++FINQ+RMK
Sbjct: 120 GLVVVDSVAALTPKSELEGDMGDSSVGVHARLMSQAMRKLTSSIARSNCMVIFINQIRMK 179

Query: 207 IGVM 210
           IGVM
Sbjct: 180 IGVM 183


>gi|33636164|emb|CAE18403.1| RecA protein [Lactobacillus fermentum]
          Length = 219

 Score =  283 bits (725), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 134/220 (60%), Positives = 177/220 (80%), Gaps = 2/220 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G        I  +SSGSL +D ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A
Sbjct: 1   GSIMRMGDAADTK--IATISSGSLAIDEALGVGGYPRGRIIEMYGPESSGKTTVALHAVA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + Q+ GGT A++DAE+ALD  YA  LGV + +LL+SQPDTGEQ LEI D L+ SGAVDI+
Sbjct: 59  EVQRRGGTAAYIDAENALDPQYATALGVQINDLLLSQPDTGEQGLEIADALIASGAVDIV 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I+++K I +FINQ+R K+GV
Sbjct: 119 VVDSVAALVPRAEIEGEMGDTHVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           MFG+PETT GG ALKFYS++R++IRR   +K+   + GN+
Sbjct: 179 MFGNPETTPGGRALKFYSTIRMEIRRGEQLKNGTDVIGNR 218


>gi|68635400|emb|CAF21755.1| recombinase A [Lactobacillus coleohominis]
          Length = 200

 Score =  283 bits (725), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 133/197 (67%), Positives = 167/197 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  VSSGSL +D ALGIGG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   IASVSSGSLAIDDALGIGGYPRGRIIEMYGPESSGKTTVALHAVAEVQKQGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD  YA  LGVD+ NLL+SQPDTGEQ LEI D L+ SGAVDI+V+DSVAAL PRAEIE
Sbjct: 62  NALDPQYAEALGVDIDNLLLSQPDTGEQGLEIADALIASGAVDIVVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+  I+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GEMGDTHVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FYS++R++IRR   +K+
Sbjct: 182 FYSTIRMEIRRGEQLKE 198


>gi|68637463|emb|CAF21825.1| recombinase A [Aerococcus urinaeequi]
          Length = 200

 Score =  283 bits (725), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 135/197 (68%), Positives = 167/197 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  V +GSL LDI+LG+GG+P+GRI+E+YGPESSGKTT++LH IA+ QK GG  AF+DAE
Sbjct: 2   ISTVPTGSLTLDISLGVGGYPRGRIIEVYGPESSGKTTVSLHAIAEVQKRGGIAAFIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD  YA KLGV++  LL+SQPDTGEQ LEI D LV SGA+DIIV+DSVAAL PRAEIE
Sbjct: 62  NALDPEYAAKLGVNVDELLLSQPDTGEQGLEIADALVSSGAIDIIVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFGSPETT GG ALK
Sbjct: 122 GEMGDSHIGLQARLMSQALRKLSGTINKTKTIAIFINQIREKVGVMFGSPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FYS+VRL++RR   IK+
Sbjct: 182 FYSTVRLEVRRGEQIKE 198


>gi|325650826|emb|CBY89596.1| RecA protein [Rhizobium leguminosarum]
          Length = 173

 Score =  283 bits (725), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 136/174 (78%), Positives = 160/174 (91%), Gaps = 1/174 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTT
Sbjct: 1   IERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVR
Sbjct: 60  LALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           SGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S  +
Sbjct: 120 SGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNTM 173


>gi|301318394|gb|ADK67112.1| RecA protein [Stenotrophomonas sp. DSM 2408]
 gi|301318398|gb|ADK67114.1| RecA protein [Stenotrophomonas koreensis]
          Length = 182

 Score =  283 bits (725), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 139/182 (76%), Positives = 159/182 (87%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +EVV +GSL LDIALGIGG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EQVEVVPTGSLMLDIALGIGGLPRGRVVEIYGPESSGKTTLTLQAIAECQKLGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+VIDSVAALTP+AE
Sbjct: 61  AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDIVVIDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS  ++VFINQ+RMKIGVM    SPETTTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPETTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|158632166|gb|ABW75479.1| RecA [Rhizobium multihospitium]
          Length = 162

 Score =  283 bits (725), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 132/160 (82%), Positives = 152/160 (95%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL
Sbjct: 2   VSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+M
Sbjct: 62  DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 121

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           G+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMK+
Sbjct: 122 GDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKV 161


>gi|325651187|emb|CBY89415.1| RecA protein [Mesorhizobium sp. R-45888]
          Length = 172

 Score =  283 bits (725), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 135/173 (78%), Positives = 158/173 (91%), Gaps = 1/173 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+
Sbjct: 1   KGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTV 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D+
Sbjct: 60  AEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           +V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS  +++FIN
Sbjct: 120 LVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFIN 172


>gi|307343133|emb|CBJ18096.1| recombinase A [Micromonospora aurantiaca]
 gi|307343139|emb|CBJ18099.1| recombinase A [Micromonospora chalcea]
          Length = 184

 Score =  283 bits (725), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 133/184 (72%), Positives = 157/184 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YAR LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYARALGVDTDALLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVRL 231
           SVRL
Sbjct: 181 SVRL 184


>gi|289812921|gb|ADD20921.1| recombinase A [Mesorhizobium sp. CCBAU 33182]
          Length = 164

 Score =  283 bits (725), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 132/163 (80%), Positives = 153/163 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAE
Sbjct: 2   IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIE
Sbjct: 62  HALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           G+MG++LPG+QARLMSQALRKLT+SISRS  +++FINQ+RMKI
Sbjct: 122 GEMGDALPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKI 164


>gi|158632170|gb|ABW75481.1| RecA [Rhizobium multihospitium]
          Length = 162

 Score =  283 bits (725), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 133/161 (82%), Positives = 152/161 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL
Sbjct: 2   VSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+M
Sbjct: 62  DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 121

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMK G
Sbjct: 122 GDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKXG 162


>gi|194476415|gb|ACF74772.1| RecA [Rhizobium sp. CCBAU 83476]
          Length = 167

 Score =  283 bits (725), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 133/162 (82%), Positives = 154/162 (95%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           +SGS+GLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD
Sbjct: 6   ASGSVGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALD 65

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG
Sbjct: 66  PVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMG 125

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIGVM
Sbjct: 126 DSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 167


>gi|57116484|gb|AAW33733.1| recombinase A [Candidatus Hamiltonella defensa]
          Length = 193

 Score =  283 bits (725), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 132/191 (69%), Positives = 163/191 (85%)

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD I A+KLGVD+ NLL SQPDT
Sbjct: 2   LEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIXAKKLGVDIDNLLCSQPDT 61

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  +
Sbjct: 62  GEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 121

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +  S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GS+K+ + + G++
Sbjct: 122 LKNSNTLLIFINQLRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKNGEEVIGSE 181

Query: 250 TRVKVVKNKMA 260
           TRVKVV+   A
Sbjct: 182 TRVKVVRANSA 192


>gi|68637284|emb|CAF21785.1| recombinase A [Lactobacillus panis]
          Length = 200

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 131/197 (66%), Positives = 167/197 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  +SSGSL +D ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ Q+ GGT A++DAE
Sbjct: 2   IATISSGSLAIDKALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQRQGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD  YA  LGVD+ NLL+SQPDTGE+ L I D L+ SGAVD++VIDSVAAL P+AEI+
Sbjct: 62  NALDPQYAEALGVDVDNLLLSQPDTGEEGLAIADALIASGAVDLVVIDSVAALVPQAEID 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG++  G+QARLMSQALRKL+  I+++K I +FINQ+R K+GVMFG+PETTTGG ALK
Sbjct: 122 GDMGDAHVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTTGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FYS++R++IRR   IK+
Sbjct: 182 FYSTIRMEIRRAEQIKN 198


>gi|307343418|emb|CBJ18150.1| recombinase A [Micromonospora sp. SG2]
          Length = 184

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 132/184 (71%), Positives = 158/184 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   LL+SQPDTGEQALEITDMLVRSGA+DI+VIDSVAAL PRAEIEG+M
Sbjct: 61  DPDYAKALGVDTDALLVSQPDTGEQALEITDMLVRSGAIDIVVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVRL 231
           SVRL
Sbjct: 181 SVRL 184


>gi|68637404|emb|CAF21813.1| recombinase A [Leuconostoc citreum]
          Length = 200

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 135/197 (68%), Positives = 163/197 (82%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE   SGS+ LD+ALG+GG+PKGRI+EIYGPESSGKTTLALH +A+ QK GGT A++DAE
Sbjct: 2   IETYPSGSVKLDVALGVGGYPKGRIIEIYGPESSGKTTLALHAVAEVQKAGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A +  YA  LGV    LL+SQPDTGEQ LEI D LV+SGAVDIIV+DSVAAL PRAEIE
Sbjct: 62  NAFNVKYAEALGVQKDELLLSQPDTGEQGLEIADALVQSGAVDIIVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL  +++R+  I +FINQ+R KIGVMFG+PETT GG ALK
Sbjct: 122 GEMGDSHVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FYS++RL++RR   IKD
Sbjct: 182 FYSTIRLEVRRSTQIKD 198


>gi|285920710|gb|ADC39688.1| recombinase A [Campylobacter coli]
 gi|285920712|gb|ADC39689.1| recombinase A [Campylobacter coli]
 gi|285920714|gb|ADC39690.1| recombinase A [Campylobacter coli]
 gi|285920716|gb|ADC39691.1| recombinase A [Campylobacter coli]
 gi|285920718|gb|ADC39692.1| recombinase A [Campylobacter coli]
 gi|285920720|gb|ADC39693.1| recombinase A [Campylobacter coli]
 gi|285920722|gb|ADC39694.1| recombinase A [Campylobacter coli]
 gi|285920724|gb|ADC39695.1| recombinase A [Campylobacter coli]
 gi|285920726|gb|ADC39696.1| recombinase A [Campylobacter coli]
 gi|285920728|gb|ADC39697.1| recombinase A [Campylobacter coli]
 gi|285920730|gb|ADC39698.1| recombinase A [Campylobacter coli]
 gi|285920734|gb|ADC39700.1| recombinase A [Campylobacter coli]
 gi|285920736|gb|ADC39701.1| recombinase A [Campylobacter coli]
 gi|285920738|gb|ADC39702.1| recombinase A [Campylobacter coli]
 gi|285920740|gb|ADC39703.1| recombinase A [Campylobacter coli]
 gi|285920742|gb|ADC39704.1| recombinase A [Campylobacter coli]
 gi|285920744|gb|ADC39705.1| recombinase A [Campylobacter coli]
 gi|285920750|gb|ADC39708.1| recombinase A [Campylobacter coli]
 gi|285920758|gb|ADC39712.1| recombinase A [Campylobacter coli]
 gi|285920768|gb|ADC39717.1| recombinase A [Campylobacter coli]
 gi|285920770|gb|ADC39718.1| recombinase A [Campylobacter coli]
 gi|285920772|gb|ADC39719.1| recombinase A [Campylobacter coli]
 gi|285920774|gb|ADC39720.1| recombinase A [Campylobacter coli]
 gi|285920776|gb|ADC39721.1| recombinase A [Campylobacter coli]
 gi|285920778|gb|ADC39722.1| recombinase A [Campylobacter coli]
 gi|285920780|gb|ADC39723.1| recombinase A [Campylobacter coli]
 gi|285920782|gb|ADC39724.1| recombinase A [Campylobacter coli]
 gi|285920784|gb|ADC39725.1| recombinase A [Campylobacter coli]
 gi|285920786|gb|ADC39726.1| recombinase A [Campylobacter coli]
 gi|285920788|gb|ADC39727.1| recombinase A [Campylobacter coli]
 gi|285920790|gb|ADC39728.1| recombinase A [Campylobacter coli]
 gi|285920792|gb|ADC39729.1| recombinase A [Campylobacter coli]
 gi|285920794|gb|ADC39730.1| recombinase A [Campylobacter coli]
 gi|285920796|gb|ADC39731.1| recombinase A [Campylobacter coli]
 gi|285920798|gb|ADC39732.1| recombinase A [Campylobacter coli]
 gi|285920800|gb|ADC39733.1| recombinase A [Campylobacter coli]
 gi|285920802|gb|ADC39734.1| recombinase A [Campylobacter coli]
 gi|285920804|gb|ADC39735.1| recombinase A [Campylobacter coli]
 gi|285920806|gb|ADC39736.1| recombinase A [Campylobacter coli]
 gi|285920808|gb|ADC39737.1| recombinase A [Campylobacter coli]
 gi|285920810|gb|ADC39738.1| recombinase A [Campylobacter coli]
 gi|285920812|gb|ADC39739.1| recombinase A [Campylobacter coli]
 gi|285920814|gb|ADC39740.1| recombinase A [Campylobacter coli]
 gi|285920816|gb|ADC39741.1| recombinase A [Campylobacter coli]
 gi|285920818|gb|ADC39742.1| recombinase A [Campylobacter coli]
 gi|285920820|gb|ADC39743.1| recombinase A [Campylobacter coli]
 gi|285920822|gb|ADC39744.1| recombinase A [Campylobacter coli]
 gi|285920824|gb|ADC39745.1| recombinase A [Campylobacter coli]
 gi|285920826|gb|ADC39746.1| recombinase A [Campylobacter coli]
 gi|285920828|gb|ADC39747.1| recombinase A [Campylobacter coli]
 gi|285920830|gb|ADC39748.1| recombinase A [Campylobacter coli]
 gi|285920832|gb|ADC39749.1| recombinase A [Campylobacter coli]
 gi|285920834|gb|ADC39750.1| recombinase A [Campylobacter coli]
 gi|285920842|gb|ADC39754.1| recombinase A [Campylobacter coli]
 gi|285920844|gb|ADC39755.1| recombinase A [Campylobacter coli]
 gi|285920846|gb|ADC39756.1| recombinase A [Campylobacter coli]
 gi|285920848|gb|ADC39757.1| recombinase A [Campylobacter coli]
 gi|285920850|gb|ADC39758.1| recombinase A [Campylobacter coli]
 gi|285920852|gb|ADC39759.1| recombinase A [Campylobacter coli]
 gi|285920854|gb|ADC39760.1| recombinase A [Campylobacter coli]
 gi|285920856|gb|ADC39761.1| recombinase A [Campylobacter coli]
 gi|285920858|gb|ADC39762.1| recombinase A [Campylobacter coli]
 gi|285920860|gb|ADC39763.1| recombinase A [Campylobacter coli]
 gi|285920862|gb|ADC39764.1| recombinase A [Campylobacter coli]
 gi|285920864|gb|ADC39765.1| recombinase A [Campylobacter coli]
 gi|285920866|gb|ADC39766.1| recombinase A [Campylobacter coli]
 gi|285920868|gb|ADC39767.1| recombinase A [Campylobacter coli]
 gi|285920870|gb|ADC39768.1| recombinase A [Campylobacter coli]
 gi|285920872|gb|ADC39769.1| recombinase A [Campylobacter coli]
 gi|285920874|gb|ADC39770.1| recombinase A [Campylobacter coli]
          Length = 205

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 133/194 (68%), Positives = 160/194 (82%), Gaps = 1/194 (0%)

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
           +ALGIGG PKGRI+EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD  YA+ LG
Sbjct: 1   LALGIGGIPKGRIIEIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLG 60

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           VD  NL ISQPD GEQALEI + + RSGA+D+IV+DSVAALTP+AEIEGDMG+   G+QA
Sbjct: 61  VDTDNLYISQPDFGEQALEIVETIARSGAIDLIVVDSVAALTPKAEIEGDMGDQHVGLQA 120

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRR 235
           RLMSQALRKLT  + +    ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R+
Sbjct: 121 RLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRK 180

Query: 236 VGSIKDKDSITGNQ 249
           V ++K  +   GN+
Sbjct: 181 VATLKQNEEPIGNR 194


>gi|158631828|gb|ABW75019.1| RecA [Sinorhizobium meliloti]
          Length = 166

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 135/160 (84%), Positives = 150/160 (93%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +
Sbjct: 7   GSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPV 66

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+S
Sbjct: 67  YARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDS 126

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           LPGMQARLMSQALRKLT+SIS+S C+++FINQ+RM IGVM
Sbjct: 127 LPGMQARLMSQALRKLTASISKSNCMVIFINQIRMXIGVM 166


>gi|146740933|emb|CAJ44527.1| recombinase A [Bradyrhizobium sp. CH2437]
          Length = 186

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 135/184 (73%), Positives = 164/184 (89%), Gaps = 1/184 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KAL AALSQI+R +GKG++M+LG      + +E +SSGSLGLDIALGIGG P+GR+
Sbjct: 2   MDKTKALAAALSQIERQFGKGSVMKLGKNDRSMD-VEAISSGSLGLDIALGIGGLPRGRV 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 121 GEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180

Query: 190 ISRS 193
           I++S
Sbjct: 181 INKS 184


>gi|25808105|gb|AAN74117.1| RecA [Helicobacter pylori]
          Length = 196

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 130/195 (66%), Positives = 163/195 (83%), Gaps = 1/195 (0%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGV
Sbjct: 1   ALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           D +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QAR
Sbjct: 61  DTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRV 236
           LMS ALRK+T  + +    L+FINQ+RMKIG+  +GSPETTTGGNALKFY+SVR+DIRR+
Sbjct: 121 LMSHALRKITGVLHKMNTTLIFINQIRMKIGMTGYGSPETTTGGNALKFYASVRIDIRRI 180

Query: 237 GSIKDKDSITGNQTR 251
            ++K  +   GN+ +
Sbjct: 181 AALKQNEQHIGNRAK 195


>gi|68635395|emb|CAF21754.1| recombinase A [Lactobacillus catenaformis]
          Length = 200

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 130/197 (65%), Positives = 167/197 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+ SGSL LD ALGIGG+PKGRI+EIYGPESSGKTTL LH IA+ QK GG  AFVDAE
Sbjct: 2   VDVIPSGSLTLDAALGIGGYPKGRIIEIYGPESSGKTTLTLHAIAECQKQGGKAAFVDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HA+D +YA+ LGV++  L++SQPD+GEQALEI +MLVRSG +D+IVIDSVAAL P+ E++
Sbjct: 62  HAIDPVYAKNLGVNIDELILSQPDSGEQALEIAEMLVRSGVIDLIVIDSVAALVPQVELD 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+M +   G+QARLMS+ALRKL+  ++++ C ++FINQ+R KIG+MFG+PETTTGG ALK
Sbjct: 122 GEMSDQNMGLQARLMSKALRKLSGVMNKTNCTVIFINQLREKIGIMFGNPETTTGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FYSSVR++IRR   IK+
Sbjct: 182 FYSSVRIEIRRSEQIKN 198


>gi|325651185|emb|CBY89414.1| RecA protein [Mesorhizobium sp. R-45834]
          Length = 173

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 136/173 (78%), Positives = 158/173 (91%), Gaps = 1/173 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 2   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           GEQALEI D LVRSGA+D++V+DSVAALTP AEIEG+MG+SLPG+QARLMSQA
Sbjct: 121 GEQALEICDTLVRSGAIDVLVVDSVAALTPXAEIEGEMGDSLPGLQARLMSQA 173


>gi|298566898|gb|ADI86525.1| recombination protein A [Sinorhizobium sp. CCBAU 05600]
          Length = 160

 Score =  283 bits (723), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 133/160 (83%), Positives = 151/160 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL
Sbjct: 1   VSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M
Sbjct: 61  DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKI
Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKI 160


>gi|159149114|gb|ABW91113.1| RecA [Rhodobacter sp. DQ12-45T]
          Length = 183

 Score =  283 bits (723), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 137/184 (74%), Positives = 158/184 (85%), Gaps = 1/184 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG+   + E IE  S+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTL LH
Sbjct: 1   FGKGSIMKLGADNPVME-IEAASTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLTLH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            +A+ QK GG CAFVDAEHALD  YA+KLGV+L  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  VVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLISQPDTGEQALEIVDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++V+DSVAALTP+ EIEGDMG+   G QARLMSQA+RKLTSSISRS C+++FINQ+RMK
Sbjct: 120 SLVVVDSVAALTPKPEIEGDMGDMQMGSQARLMSQAMRKLTSSISRSNCMVIFINQIRMK 179

Query: 207 IGVM 210
           IGVM
Sbjct: 180 IGVM 183


>gi|323388486|gb|ADX60532.1| recombinase A [Geobacillus sp. NTU 03]
          Length = 187

 Score =  283 bits (723), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 133/182 (73%), Positives = 160/182 (87%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG+GG+P+GRIVEIYGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD IYA+KLGV+
Sbjct: 1   LGVGGYPRGRIVEIYGPESSGKTTVALHAIAEVQKRGGQAAFIDAEHALDPIYAQKLGVN 60

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +  LL+SQPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEIEG+MG++  G+QARL
Sbjct: 61  IDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDAHVGLQARL 120

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRKL+ +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRL++RR   
Sbjct: 121 MSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYASVRLEVRRAEQ 180

Query: 239 IK 240
           IK
Sbjct: 181 IK 182


>gi|68637299|emb|CAF21789.1| recombinase A [Lactobacillus paracasei subsp. paracasei]
          Length = 200

 Score =  283 bits (723), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 135/196 (68%), Positives = 166/196 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           + VVSSGSL +D ALG+G FP+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   VSVVSSGSLAVDDALGVGSFPRGRIVEIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGV++  LL+SQPDTGEQ LEI D LV SGA+DI+VIDSVAAL PRAEIE
Sbjct: 62  NAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG++  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+G++FGSPETT GG ALK
Sbjct: 122 GDMGDAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIK 240
           FY++VRL+IRR   IK
Sbjct: 182 FYATVRLEIRRSEQIK 197


>gi|297528261|gb|ADI46166.1| recombination protein A [Agrobacterium sp. CCBAU 31169]
          Length = 172

 Score =  283 bits (723), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 138/171 (80%), Positives = 158/171 (92%), Gaps = 1/171 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMS
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMS 172


>gi|289190708|gb|ADC93459.1| recombinase A protein [Rhizobium tropici]
          Length = 169

 Score =  283 bits (723), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 135/170 (79%), Positives = 157/170 (92%), Gaps = 1/170 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LGS  ++ E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK
Sbjct: 1   KLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQK 59

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DS
Sbjct: 60  KGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDS 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           VAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+
Sbjct: 120 VAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQI 169


>gi|29652190|gb|AAO87756.1| RecA [Listeria monocytogenes]
          Length = 201

 Score =  283 bits (723), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 135/202 (66%), Positives = 168/202 (83%), Gaps = 2/202 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKT
Sbjct: 2   QIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LV
Sbjct: 60  TVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FIN
Sbjct: 120 RSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNAL 223
           Q+R K+GVMFG+PE T GG AL
Sbjct: 180 QIREKVGVMFGNPEITPGGRAL 201


>gi|158632168|gb|ABW75480.1| RecA [Rhizobium multihospitium]
          Length = 162

 Score =  283 bits (723), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 133/161 (82%), Positives = 152/161 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSL LDIALGIGG PKGRI+EIY PESSGKTTLAL TIA++QK GG CAFVDAEHAL
Sbjct: 2   VSTGSLSLDIALGIGGLPKGRIIEIYRPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+M
Sbjct: 62  DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 121

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIG
Sbjct: 122 GDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 162


>gi|67904926|emb|CAF21803.1| recombinase A [Lactobacillus vaccinostercus]
          Length = 200

 Score =  283 bits (723), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 134/197 (68%), Positives = 166/197 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  VSSGS+ LD ALG+GG+P+G IVE+YGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   IATVSSGSIALDDALGVGGYPRGPIVEMYGPESSGKTTVALHAVAEVQKQGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD  YA  LGV++  LL+SQPDTGE+ LEI D L+ SGAVDI+VIDSVAAL PRAEIE
Sbjct: 62  NALDPQYAEALGVNIDALLLSQPDTGEEGLEIADALISSGAVDIVVIDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FYS++RL+IRR   IKD
Sbjct: 182 FYSTIRLEIRRAEQIKD 198


>gi|68637188|emb|CAF21766.1| recombinase A [Lactobacillus fuchuensis]
          Length = 200

 Score =  283 bits (723), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 133/197 (67%), Positives = 167/197 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  VSSGSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ Q+ GGT A++DAE
Sbjct: 2   ISTVSSGSLALDEALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQRQGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGV++  LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEIE
Sbjct: 62  NAMDPKYATALGVNIDELLLSQPDTGEQGLEIADALVSSGAVDILVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PE T GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPEITPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FYS+VRL++RR  +IK+
Sbjct: 182 FYSTVRLEVRRAETIKN 198


>gi|158631768|gb|ABW74989.1| RecA [Mesorhizobium gobiense]
          Length = 161

 Score =  283 bits (723), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 132/161 (81%), Positives = 152/161 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHAL
Sbjct: 1   VPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+M
Sbjct: 61  DPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+SLPG+QARLMSQALRKLT+SISRS  +++FINQ+RMKIG
Sbjct: 121 GDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKIG 161


>gi|289812923|gb|ADD20922.1| recombinase A [Rhizobium leguminosarum]
          Length = 164

 Score =  283 bits (723), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 132/163 (80%), Positives = 154/163 (94%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSLGLDIALG+GG P+GRI+E+YGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 2   IETISTGSLGLDIALGVGGLPRGRIIEMYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE
Sbjct: 62  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           G+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKI
Sbjct: 122 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKI 164


>gi|298566892|gb|ADI86522.1| recombination protein A [Sinorhizobium fredii]
          Length = 164

 Score =  283 bits (723), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 134/159 (84%), Positives = 150/159 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL
Sbjct: 5   VSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 64

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M
Sbjct: 65  DPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 124

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 125 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 163


>gi|158631770|gb|ABW74990.1| RecA [Mesorhizobium tarimense]
          Length = 164

 Score =  283 bits (723), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 132/161 (81%), Positives = 152/161 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHAL
Sbjct: 1   VPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+M
Sbjct: 61  DPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+SLPG+QARLMSQALRKLT+SISRS  +++FINQ+RMKIG
Sbjct: 121 GDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKIG 161


>gi|325512773|gb|ADZ23575.1| RecA [Sinorhizobium fredii]
          Length = 159

 Score =  283 bits (723), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 134/159 (84%), Positives = 150/159 (94%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD
Sbjct: 1   STGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG
Sbjct: 61  PIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKI
Sbjct: 121 DSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKI 159


>gi|325512825|gb|ADZ23601.1| RecA [Sinorhizobium fredii]
          Length = 159

 Score =  282 bits (722), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 134/159 (84%), Positives = 150/159 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL
Sbjct: 1   VSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M
Sbjct: 61  DPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 159


>gi|68637373|emb|CAF21807.1| recombinase A [Leuconostoc carnosum]
          Length = 200

 Score =  282 bits (722), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 133/197 (67%), Positives = 165/197 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E + SGS+ LDIALG+GG+PKGRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   VETIPSGSVKLDIALGVGGYPKGRIIEVYGPESSGKTTIALHAVAEVQKQGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +AL+  YA  LGV    LL+SQPDTGEQ LEI D LV+SGAVD+IVIDSVAAL PRAEIE
Sbjct: 62  NALNVKYAEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDMIVIDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL  +++R+  I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FYS+VRL++RR   IKD
Sbjct: 182 FYSTVRLEVRRSTQIKD 198


>gi|213012306|gb|ACJ38719.1| recombination-repair protein [Vibrio parahaemolyticus]
          Length = 180

 Score =  282 bits (722), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 126/179 (70%), Positives = 158/179 (88%)

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSV
Sbjct: 2   GKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSV 61

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+P
Sbjct: 62  AALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNP 121

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           ETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IMYG
Sbjct: 122 ETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYG 180


>gi|158631812|gb|ABW75011.1| RecA [Rhizobium sp. CCBAU 83482]
          Length = 162

 Score =  282 bits (722), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 132/161 (81%), Positives = 153/161 (95%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL
Sbjct: 2   ISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+M
Sbjct: 62  DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEM 121

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIG
Sbjct: 122 GDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIG 162


>gi|307343147|emb|CBJ18103.1| recombinase A [Micromonospora coerulea]
          Length = 183

 Score =  282 bits (722), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 132/182 (72%), Positives = 157/182 (86%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD 
Sbjct: 2   TGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDP 61

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
            YA+ LGVD   LL+SQPDTGEQALEITDMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+
Sbjct: 62  DYAKALGVDTDALLVSQPDTGEQALEITDMLVRSGAIDIVVIDSVAALVPRAEIEGEMGD 121

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SV
Sbjct: 122 SHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASV 181

Query: 230 RL 231
           RL
Sbjct: 182 RL 183


>gi|68637440|emb|CAF21820.1| recombinase A [Pediococcus dextrinicus]
          Length = 192

 Score =  282 bits (722), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 129/191 (67%), Positives = 165/191 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GSL LD ALG+GG+P+GRIVE+YGPESSGKTT+ALH +A+ Q+ GGT A++DAE
Sbjct: 2   IETVSTGSLALDNALGVGGYPRGRIVEVYGPESSGKTTVALHAVAEVQRNGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGV++ +LL+SQPDTGEQ LEI D LV SGAVDIIV+DSVAAL PRAEIE
Sbjct: 62  NAMDPAYATALGVNIDDLLLSQPDTGEQGLEIADALVTSGAVDIIVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+  I+++K I +FINQ+R K+G+MFG+PETT GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGKINKTKTIAIFINQIREKVGIMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRR 235
           FY+++RL++RR
Sbjct: 182 FYATIRLEVRR 192


>gi|199594972|gb|ACH90950.1| RecA [Stenotrophomonas maltophilia]
 gi|199595004|gb|ACH90966.1| RecA [Stenotrophomonas maltophilia]
 gi|199595006|gb|ACH90967.1| RecA [Stenotrophomonas maltophilia]
 gi|199595022|gb|ACH90975.1| RecA [Stenotrophomonas maltophilia]
 gi|199595034|gb|ACH90981.1| RecA [Stenotrophomonas maltophilia]
 gi|199595054|gb|ACH90991.1| RecA [Stenotrophomonas maltophilia]
 gi|199595062|gb|ACH90995.1| RecA [Stenotrophomonas maltophilia]
 gi|199595072|gb|ACH91000.1| RecA [Stenotrophomonas maltophilia]
          Length = 182

 Score =  282 bits (722), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 138/182 (75%), Positives = 158/182 (86%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +E + +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKMGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+VIDSVAALTP+AE
Sbjct: 61  AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVIDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS  ++VFINQ+RMKIGVM    SPETTTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPETTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|298566900|gb|ADI86526.1| recombination protein A [Sinorhizobium fredii]
          Length = 160

 Score =  282 bits (722), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 134/159 (84%), Positives = 150/159 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL
Sbjct: 1   VSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M
Sbjct: 61  DPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 159


>gi|195542190|gb|ACF98305.1| RecA [Rhizobium yanglingense]
          Length = 165

 Score =  282 bits (722), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 133/162 (82%), Positives = 152/162 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 3   IETISTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE
Sbjct: 63  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMK
Sbjct: 123 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMK 164


>gi|325512783|gb|ADZ23580.1| RecA [Sinorhizobium fredii]
 gi|325512813|gb|ADZ23595.1| RecA [Sinorhizobium fredii]
          Length = 158

 Score =  282 bits (722), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 134/158 (84%), Positives = 149/158 (94%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           LGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYA
Sbjct: 1   LGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           RKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLP
Sbjct: 61  RKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLP 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           GMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 121 GMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 158


>gi|289474497|gb|ADC97868.1| RecA [Agrobacterium rhizogenes]
          Length = 170

 Score =  282 bits (722), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 138/171 (80%), Positives = 157/171 (91%), Gaps = 1/171 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKT
Sbjct: 1   QIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LV
Sbjct: 60  TLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           RSGA+D++V+DSVAALTPRA IEG+MG+SLPG+QARLMSQALRKLT+SISR
Sbjct: 120 RSGAIDVLVVDSVAALTPRAXIEGEMGDSLPGLQARLMSQALRKLTASISR 170


>gi|68637389|emb|CAF21810.1| recombinase A [Leuconostoc mesenteroides subsp. dextranicum]
 gi|68637394|emb|CAF21811.1| recombinase A [Leuconostoc mesenteroides subsp. mesenteroides]
 gi|68637399|emb|CAF21812.1| recombinase A [Leuconostoc mesenteroides subsp. cremoris]
          Length = 200

 Score =  282 bits (722), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 132/197 (67%), Positives = 165/197 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE + SGS+ +D+ALG+GG+PKGRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   IETIPSGSVKIDVALGVGGYPKGRIIEVYGPESSGKTTIALHAVAEVQKQGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD  YA  LGV    LL+SQPDTGEQ LEI D LV+SGAVD+IV+DSVAAL PRAEIE
Sbjct: 62  NALDVKYAEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDMIVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL  +++R+  I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FYS+VRL++RR   IKD
Sbjct: 182 FYSTVRLEVRRSTQIKD 198


>gi|68635333|emb|CAF21741.1| recombinase A [Lactobacillus acidipiscis]
          Length = 200

 Score =  282 bits (722), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 132/197 (67%), Positives = 166/197 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  + SGSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ Q  GGT A++DAE
Sbjct: 2   ILTIPSGSLALDEALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQAQGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD +YA  LGV++  LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEIE
Sbjct: 62  NALDPVYASALGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FY+++RL+I+R   IKD
Sbjct: 182 FYATIRLEIKRAEQIKD 198


>gi|158147275|gb|ABW22691.1| recA [Rhizobium leguminosarum]
          Length = 165

 Score =  282 bits (722), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 132/162 (81%), Positives = 153/162 (94%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 4   IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE
Sbjct: 64  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMK
Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMK 165


>gi|254055245|gb|ACT64222.1| RecA [Burkholderia cepacia]
          Length = 187

 Score =  282 bits (722), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 136/188 (72%), Positives = 164/188 (87%), Gaps = 1/188 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMF 211
           RMKIGVMF
Sbjct: 180 RMKIGVMF 187


>gi|33636162|emb|CAE18402.1| RecA protein [Lactobacillus fermentum]
          Length = 219

 Score =  282 bits (722), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 133/220 (60%), Positives = 176/220 (80%), Gaps = 2/220 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G           +SSGSL +D ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A
Sbjct: 1   GSIMRMGDAADTKNA--TISSGSLAIDEALGVGGYPRGRIIEMYGPESSGKTTVALHAVA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + Q+ GGT A++DAE+ALD  YA  LGV + +LL+SQPDTGEQ LEI D L+ SGAVDI+
Sbjct: 59  EVQRRGGTAAYIDAENALDPQYATALGVQINDLLLSQPDTGEQGLEIADALIASGAVDIV 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I+++K I +FINQ+R K+GV
Sbjct: 119 VVDSVAALVPRAEIEGEMGDTHVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           MFG+PETT GG ALKFYS++R++IRR   +K+   + GN+
Sbjct: 179 MFGNPETTPGGRALKFYSTIRMEIRRGEQLKNGTDVIGNR 218


>gi|199595056|gb|ACH90992.1| RecA [Stenotrophomonas maltophilia]
 gi|199595088|gb|ACH91008.1| RecA [Stenotrophomonas maltophilia]
 gi|199595090|gb|ACH91009.1| RecA [Stenotrophomonas maltophilia]
          Length = 182

 Score =  282 bits (722), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 138/182 (75%), Positives = 158/182 (86%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +E + +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKLGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+VIDSVAALTP+AE
Sbjct: 61  AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVIDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS  ++VFINQ+RMKIGVM    SPETTTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPETTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|169883205|gb|ACA97512.1| recombination protein RecA [Bradyrhizobium elkanii]
          Length = 187

 Score =  282 bits (722), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 136/185 (73%), Positives = 163/185 (88%), Gaps = 1/185 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DKSKAL AALSQI+R +GKG++M+LG      + +E VSSGSLGLDIALG+GG P
Sbjct: 4   EGSSMDKSKALSAALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLP 62

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLIS
Sbjct: 63  KGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLIS 122

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRK
Sbjct: 123 QPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRK 182

Query: 186 LTSSI 190
           LT+SI
Sbjct: 183 LTASI 187


>gi|158632178|gb|ABW75485.1| RecA [Rhizobium multihospitium]
          Length = 162

 Score =  282 bits (722), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 133/161 (82%), Positives = 152/161 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSL LDIALGIGG PKGRI+EIYG ESSGKTTLAL TIA++QK GG CAFVDAEHAL
Sbjct: 2   VSTGSLSLDIALGIGGLPKGRIIEIYGTESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+M
Sbjct: 62  DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 121

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIG
Sbjct: 122 GDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 162


>gi|6694850|gb|AAF25435.1|AF214788_1 RecA protein [Arthrobacter histidinolovorans]
          Length = 192

 Score =  282 bits (721), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 134/192 (69%), Positives = 161/192 (83%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD
Sbjct: 1   LGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPDYAAKLGVD 60

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
              LL+SQPDTGEQALEI DMLV SG++DIIVIDSVAAL PRAEIEG+MG+S  G+QARL
Sbjct: 61  TDALLVSQPDTGEQALEIMDMLVGSGSLDIIVIDSVAALVPRAEIEGEMGDSHVGLQARL 120

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ +
Sbjct: 121 MSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIQT 180

Query: 239 IKDKDSITGNQT 250
           +K+     GN+T
Sbjct: 181 LKEGADSVGNRT 192


>gi|307343356|emb|CBJ18119.1| recombinase A [Micromonospora rifamycinica]
          Length = 181

 Score =  282 bits (721), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 133/181 (73%), Positives = 156/181 (86%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHALD 
Sbjct: 1   TGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
            YA+ LGVD   LL+SQPDTGEQALEITDMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+
Sbjct: 61  DYAKALGVDTDALLVSQPDTGEQALEITDMLVRSGAIDIIVIDSVAALVPRAEIEGEMGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SV
Sbjct: 121 SHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASV 180

Query: 230 R 230
           R
Sbjct: 181 R 181


>gi|315360829|gb|ADU05388.1| recombination protein A [Sinorhizobium sp. CCBAU 05699]
          Length = 159

 Score =  282 bits (721), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 133/159 (83%), Positives = 150/159 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL
Sbjct: 1   VSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M
Sbjct: 61  DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 159


>gi|13357640|ref|NP_077914.1| recombinase A [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170761963|ref|YP_001752163.1| recombinase A [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171920334|ref|ZP_02690990.2| protein RecA [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|183508549|ref|ZP_02689824.2| protein RecA [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|186701764|ref|ZP_02553288.2| protein RecA [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|11387035|sp|Q9PR61|RECA_UREPA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|189039614|sp|B1AI69|RECA_UREP2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|11277981|pir||C82935 recombination protein UU084 [imported] - Ureaplasma urealyticum
 gi|6899036|gb|AAF30489.1|AE002108_2 recombination protein [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827540|gb|ACA32802.1| protein RecA [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171902757|gb|EDT49046.1| protein RecA [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|182675990|gb|EDT87895.1| protein RecA [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|186701038|gb|EDU19320.1| protein RecA [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 334

 Score =  282 bits (721), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 133/281 (47%), Positives = 192/281 (68%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I  +S+GS+ +D   GI G P G+I EIYG ESSGKTT+AL TIA+ QKTGGT   +D
Sbjct: 34  EKINAISTGSIHIDQITGINGIPVGKITEIYGNESSGKTTIALQTIAECQKTGGTVVLLD 93

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E + D  YA+ L VDL  L+I+QP TGEQA ++ + L+++ ++D+IVIDSVAA+ P +E
Sbjct: 94  LEGSFDINYAKSLKVDLTKLIITQPQTGEQAFDMIETLIKTNSIDLIVIDSVAAMLPESE 153

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
            + +M E+L G  ARLMS+ LRK+   I++SK  ++FINQ+R KI   FG+PE TTGG A
Sbjct: 154 YQANMNEALMGAHARLMSKGLRKIQPLINKSKTAIIFINQLREKINTFFGNPEMTTGGKA 213

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LKFY+S+R++ ++   IK+  +  G +T+V  VKNK+A P +    DI +G G  +  E+
Sbjct: 214 LKFYASLRIETKKADLIKEGINKIGIKTKVTTVKNKLAPPLQTCFIDIFFGSGFDYNNEI 273

Query: 283 IDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ID  ++  ++ K+G+WF F   ++GQGRE  K  L +N E+
Sbjct: 274 IDFAIQYGVLKKNGSWFYFNDNKIGQGREQLKNTLSKNNEL 314


>gi|307343159|emb|CBJ18109.1| recombinase A [Micromonospora endolithica]
          Length = 183

 Score =  282 bits (721), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 132/183 (72%), Positives = 157/183 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +++GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHAL
Sbjct: 1   ITTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDALLVSQPDTGEQALEIVDMLVRSGAIDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVR 230
           SVR
Sbjct: 181 SVR 183


>gi|199594952|gb|ACH90940.1| RecA [Stenotrophomonas maltophilia]
 gi|199594954|gb|ACH90941.1| RecA [Stenotrophomonas maltophilia]
 gi|199594956|gb|ACH90942.1| RecA [Stenotrophomonas maltophilia]
 gi|199594958|gb|ACH90943.1| RecA [Stenotrophomonas maltophilia]
 gi|199594960|gb|ACH90944.1| RecA [Stenotrophomonas maltophilia]
 gi|199594962|gb|ACH90945.1| RecA [Stenotrophomonas maltophilia]
 gi|199594964|gb|ACH90946.1| RecA [Stenotrophomonas maltophilia]
 gi|199594966|gb|ACH90947.1| RecA [Stenotrophomonas maltophilia]
 gi|199594968|gb|ACH90948.1| RecA [Stenotrophomonas maltophilia]
 gi|199594970|gb|ACH90949.1| RecA [Stenotrophomonas maltophilia]
 gi|199594974|gb|ACH90951.1| RecA [Stenotrophomonas maltophilia]
 gi|199594976|gb|ACH90952.1| RecA [Stenotrophomonas maltophilia]
 gi|199594978|gb|ACH90953.1| RecA [Stenotrophomonas maltophilia]
 gi|199594982|gb|ACH90955.1| RecA [Stenotrophomonas maltophilia]
 gi|199594984|gb|ACH90956.1| RecA [Stenotrophomonas maltophilia]
 gi|199594986|gb|ACH90957.1| RecA [Stenotrophomonas maltophilia]
 gi|199594988|gb|ACH90958.1| RecA [Stenotrophomonas maltophilia]
 gi|199594990|gb|ACH90959.1| RecA [Stenotrophomonas maltophilia]
 gi|199594992|gb|ACH90960.1| RecA [Stenotrophomonas maltophilia]
 gi|199594994|gb|ACH90961.1| RecA [Stenotrophomonas maltophilia]
 gi|199594996|gb|ACH90962.1| RecA [Stenotrophomonas maltophilia]
 gi|199594998|gb|ACH90963.1| RecA [Stenotrophomonas maltophilia]
 gi|199595000|gb|ACH90964.1| RecA [Stenotrophomonas maltophilia]
 gi|199595002|gb|ACH90965.1| RecA [Stenotrophomonas maltophilia]
 gi|199595010|gb|ACH90969.1| RecA [Stenotrophomonas maltophilia]
 gi|199595014|gb|ACH90971.1| RecA [Stenotrophomonas maltophilia]
 gi|199595026|gb|ACH90977.1| RecA [Stenotrophomonas maltophilia]
 gi|199595032|gb|ACH90980.1| RecA [Stenotrophomonas maltophilia]
 gi|199595036|gb|ACH90982.1| RecA [Stenotrophomonas nitritireducens]
 gi|199595040|gb|ACH90984.1| RecA [Stenotrophomonas maltophilia]
 gi|199595042|gb|ACH90985.1| RecA [Stenotrophomonas maltophilia]
 gi|199595046|gb|ACH90987.1| RecA [Stenotrophomonas maltophilia]
 gi|199595070|gb|ACH90999.1| RecA [Stenotrophomonas maltophilia]
          Length = 182

 Score =  282 bits (721), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 137/182 (75%), Positives = 158/182 (86%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +E + +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKMGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+VIDSVAALTP+AE
Sbjct: 61  AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVIDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS  +++FINQ+RMKIGVM    SPETTTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPETTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|307343388|emb|CBJ18135.1| recombinase A [Micromonospora sp. GUI28]
          Length = 184

 Score =  282 bits (721), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 133/184 (72%), Positives = 157/184 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDALLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVRL 231
           SVRL
Sbjct: 181 SVRL 184


>gi|255040355|gb|ACT99990.1| recombinase A [Lactobacillus johnsonii]
          Length = 220

 Score =  282 bits (721), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 129/205 (62%), Positives = 169/205 (82%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  + SGSL LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 6   ISTIPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 65

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+
Sbjct: 66  NAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEID 125

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG+S  G+QARLMSQALRKL+ +IS++K I VFINQ+R K+ VMFG+PETT GG ALK
Sbjct: 126 GDMGDSHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVRVMFGNPETTPGGRALK 185

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQ 249
           FYS++RL++RR   IK    + GN+
Sbjct: 186 FYSTIRLEVRRAEQIKQGSDVIGNR 210


>gi|226973221|gb|ACO95151.1| recombinase A [Bradyrhizobium sp. RST89]
          Length = 185

 Score =  281 bits (720), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 133/186 (71%), Positives = 164/186 (88%), Gaps = 1/186 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           +AL AALSQI+R +GKG++M+LG      + IE +SSGSLGLDIALG+GG PKGR+VEIY
Sbjct: 1   QALSAALSQIERQFGKGSVMKLGKNDRSMD-IETISSGSLGLDIALGVGGLPKGRVVEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQA
Sbjct: 60  GPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 120 LEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 179

Query: 194 KCILVF 199
             +++F
Sbjct: 180 NTMVIF 185


>gi|256809968|gb|ACV31083.1| recombinase A [Listonella anguillarum]
          Length = 176

 Score =  281 bits (720), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 130/176 (73%), Positives = 155/176 (88%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LDIALG GG P GRIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+K
Sbjct: 1   LDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQRVGKTCAFIDAEHALDPIYAKK 60

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           LGV++  LL+SQPDTGEQALEI D L RSGA+D+IVIDSVAALTP+AEIEG+MG+S  G+
Sbjct: 61  LGVNIDELLVSQPDTGEQALEICDALARSGAIDVIVIDSVAALTPKAEIEGEMGDSHMGL 120

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
           QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR
Sbjct: 121 QARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVR 176


>gi|199594980|gb|ACH90954.1| RecA [Stenotrophomonas maltophilia]
 gi|199595020|gb|ACH90974.1| RecA [Stenotrophomonas maltophilia]
 gi|199595044|gb|ACH90986.1| RecA [Stenotrophomonas maltophilia]
          Length = 182

 Score =  281 bits (720), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 137/182 (75%), Positives = 158/182 (86%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +E + +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKLGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+VIDSVAALTP+AE
Sbjct: 61  AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVIDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS  +++FINQ+RMKIGVM    SPETTTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPETTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|254735820|ref|ZP_05193526.1| RecA protein [Bacillus anthracis str. Western North America
           USA6153]
          Length = 208

 Score =  281 bits (720), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 134/203 (66%), Positives = 170/203 (83%), Gaps = 2/203 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG Q      +  VSSGSL LD+ALG+GG+P+GRI+
Sbjct: 3   DRQAALDMALXQIEKQFGKGSIMKLGEQAE--RKVSTVSSGSLALDVALGVGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPDTG
Sbjct: 61  EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGS 213
           ++SK I +FINQ+R K+GVMFG+
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGN 203


>gi|49481568|ref|YP_037841.1| recA protein (recombinase A), N-terminal region [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|165872411|ref|ZP_02217046.1| RecA protein [Bacillus anthracis str. A0488]
 gi|167635813|ref|ZP_02394122.1| RecA domain protein [Bacillus anthracis str. A0442]
 gi|167639755|ref|ZP_02398024.1| RecA protein [Bacillus anthracis str. A0193]
 gi|170687909|ref|ZP_02879123.1| RecA protein [Bacillus anthracis str. A0465]
 gi|170706839|ref|ZP_02897297.1| RecA protein [Bacillus anthracis str. A0389]
 gi|177652030|ref|ZP_02934576.1| RecA protein [Bacillus anthracis str. A0174]
 gi|190568394|ref|ZP_03021301.1| protein RecA [Bacillus anthracis Tsiankovskii-I]
 gi|196034060|ref|ZP_03101470.1| protein RecA [Bacillus cereus W]
 gi|196038224|ref|ZP_03105533.1| RecA protein [Bacillus cereus NVH0597-99]
 gi|196044482|ref|ZP_03111717.1| protein RecA [Bacillus cereus 03BB108]
 gi|218904908|ref|YP_002452742.1| RecA protein [Bacillus cereus AH820]
 gi|227813312|ref|YP_002813321.1| RecA protein [Bacillus anthracis str. CDC 684]
 gi|228916418|ref|ZP_04079985.1| Endonuclease PI-MboI [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228928830|ref|ZP_04091862.1| Endonuclease PI-MboI [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935077|ref|ZP_04097907.1| Endonuclease PI-MboI [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228947501|ref|ZP_04109791.1| Endonuclease PI-MboI [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|229123294|ref|ZP_04252498.1| Endonuclease PI-MboI [Bacillus cereus 95/8201]
 gi|229603497|ref|YP_002868022.1| protein RecA [Bacillus anthracis str. A0248]
 gi|254683511|ref|ZP_05147371.1| RecA protein [Bacillus anthracis str. CNEVA-9066]
 gi|254722032|ref|ZP_05183821.1| RecA protein [Bacillus anthracis str. A1055]
 gi|254739654|ref|ZP_05197348.1| RecA protein [Bacillus anthracis str. Kruger B]
 gi|254751050|ref|ZP_05203089.1| RecA protein [Bacillus anthracis str. Vollum]
 gi|254759368|ref|ZP_05211393.1| RecA protein [Bacillus anthracis str. Australia 94]
 gi|301055270|ref|YP_003793481.1| RecA protein, N-terminal region [Bacillus anthracis CI]
 gi|49333124|gb|AAT63770.1| recA protein (recombinase A), N-terminal region [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|164711849|gb|EDR17391.1| RecA protein [Bacillus anthracis str. A0488]
 gi|167512156|gb|EDR87533.1| RecA protein [Bacillus anthracis str. A0193]
 gi|167528770|gb|EDR91528.1| RecA domain protein [Bacillus anthracis str. A0442]
 gi|170128257|gb|EDS97126.1| RecA protein [Bacillus anthracis str. A0389]
 gi|170668225|gb|EDT18974.1| RecA protein [Bacillus anthracis str. A0465]
 gi|172082399|gb|EDT67464.1| RecA protein [Bacillus anthracis str. A0174]
 gi|190560398|gb|EDV14376.1| protein RecA [Bacillus anthracis Tsiankovskii-I]
 gi|195993134|gb|EDX57092.1| protein RecA [Bacillus cereus W]
 gi|196024517|gb|EDX63189.1| protein RecA [Bacillus cereus 03BB108]
 gi|196030632|gb|EDX69230.1| RecA protein [Bacillus cereus NVH0597-99]
 gi|218539602|gb|ACK92000.1| RecA protein [Bacillus cereus AH820]
 gi|227006992|gb|ACP16735.1| RecA protein [Bacillus anthracis str. CDC 684]
 gi|228660070|gb|EEL15706.1| Endonuclease PI-MboI [Bacillus cereus 95/8201]
 gi|228812021|gb|EEM58352.1| Endonuclease PI-MboI [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228824647|gb|EEM70449.1| Endonuclease PI-MboI [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228830637|gb|EEM76242.1| Endonuclease PI-MboI [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843221|gb|EEM88302.1| Endonuclease PI-MboI [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229267905|gb|ACQ49542.1| protein RecA [Bacillus anthracis str. A0248]
 gi|300377439|gb|ADK06343.1| RecA protein, N-terminal region [Bacillus cereus biovar anthracis
           str. CI]
 gi|324327674|gb|ADY22934.1| RecA protein, N-terminal protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 208

 Score =  281 bits (720), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 134/203 (66%), Positives = 170/203 (83%), Gaps = 2/203 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG Q      +  VSSGSL LD+ALG+GG+P+GRI+
Sbjct: 3   DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RKVSTVSSGSLALDVALGVGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPDTG
Sbjct: 61  EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGS 213
           ++SK I +FINQ+R K+GVMFG+
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGN 203


>gi|193090233|gb|ACF15288.1| recombination protein A [Rhizobium etli]
 gi|193090235|gb|ACF15289.1| recombination protein A [Rhizobium etli]
          Length = 166

 Score =  281 bits (720), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 136/167 (81%), Positives = 155/167 (92%), Gaps = 1/167 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LGS  ++ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA+
Sbjct: 1   SVMKLGSNENVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V
Sbjct: 60  SQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           +DSVAALTPRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C++
Sbjct: 120 VDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNCMV 166


>gi|199595038|gb|ACH90983.1| RecA [Stenotrophomonas acidaminiphila]
          Length = 182

 Score =  281 bits (720), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 137/182 (75%), Positives = 158/182 (86%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +E + +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKQGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+VIDSVAALTP+AE
Sbjct: 61  AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVIDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS  +++FINQ+RMKIGVM    SPETTTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPETTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|158631782|gb|ABW74996.1| RecA [Mesorhizobium septentrionale]
          Length = 161

 Score =  281 bits (720), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 131/161 (81%), Positives = 152/161 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHAL
Sbjct: 1   VPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+M
Sbjct: 61  DPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+SLPG+QARLMSQALRKLT+SISRS  +++FINQ+RMK+G
Sbjct: 121 GDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKMG 161


>gi|325512819|gb|ADZ23598.1| RecA [Sinorhizobium sp. CCBAU 051121]
          Length = 158

 Score =  281 bits (720), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 131/158 (82%), Positives = 150/158 (94%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A++QK GG CAFVDAEHALD
Sbjct: 1   STGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAEAQKKGGICAFVDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG
Sbjct: 61  PVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           +SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 121 DSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 158


>gi|68637348|emb|CAF21801.1| recombinase A [Lactobacillus suebicus]
          Length = 200

 Score =  281 bits (720), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 132/197 (67%), Positives = 167/197 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  VSSGSL L+ ALG+GG+P+GRIVE+YGPESSGKTT+ALH +A+ Q  GGT A++DAE
Sbjct: 2   IATVSSGSLALNDALGVGGYPRGRIVEMYGPESSGKTTVALHAVAEVQHQGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD  YA  LGV++ +LL+SQP+TGE+ LEI D L+ SGAVDI+V+DSVAAL PRAEIE
Sbjct: 62  NALDPQYAEALGVNIDDLLLSQPNTGEKGLEIADALITSGAVDIVVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FYS++RL+IRR   IKD
Sbjct: 182 FYSTIRLEIRRAEQIKD 198


>gi|285920836|gb|ADC39751.1| recombinase A [Campylobacter coli]
 gi|285920838|gb|ADC39752.1| recombinase A [Campylobacter coli]
 gi|285920840|gb|ADC39753.1| recombinase A [Campylobacter coli]
          Length = 205

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 132/194 (68%), Positives = 159/194 (81%), Gaps = 1/194 (0%)

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
           +ALGIGG PKGRI+EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD  YA+ LG
Sbjct: 1   LALGIGGIPKGRIIEIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLG 60

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           VD  NL ISQPD GEQALEI + + RSGA+D+I +DSVAALTP+AEIEGDMG+   G+QA
Sbjct: 61  VDTDNLYISQPDFGEQALEIVETIARSGAIDLIAVDSVAALTPKAEIEGDMGDQHVGLQA 120

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRR 235
           RLMSQALRKLT  + +    ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R+
Sbjct: 121 RLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRK 180

Query: 236 VGSIKDKDSITGNQ 249
           V ++K  +   GN+
Sbjct: 181 VATLKQNEEPIGNR 194


>gi|159149116|gb|ABW91114.1| RecA [Rhodobacter sphaeroides]
          Length = 183

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 135/184 (73%), Positives = 159/184 (86%), Gaps = 1/184 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG+   + E IE  S+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTL LH
Sbjct: 1   FGKGSVMKLGANSPVME-IEATSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLTLH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            +A+ QK GG CAFVDAEHALD  YA+KLGV+L  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  VVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLISQPDTGEQALEIVDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           ++IV+DSVAALTP++EIEGDMG+   G QARLMSQA+RKLT+SI RS C+++FINQ+RMK
Sbjct: 120 NLIVVDSVAALTPKSEIEGDMGDMQMGSQARLMSQAMRKLTASIGRSNCMVIFINQIRMK 179

Query: 207 IGVM 210
           IGVM
Sbjct: 180 IGVM 183


>gi|307343408|emb|CBJ18145.1| recombinase A [Micromonospora sp. CR21]
          Length = 184

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 132/184 (71%), Positives = 157/184 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHAL
Sbjct: 1   IPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVRL 231
           SVRL
Sbjct: 181 SVRL 184


>gi|57116486|gb|AAW33734.1| recombinase A [Candidatus Regiella insecticola]
          Length = 185

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 129/185 (69%), Positives = 160/185 (86%)

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPD G
Sbjct: 1   EIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDNG 60

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG+MG++  G+ AR+MS+A+RK   ++
Sbjct: 61  EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEMGDAHMGLAARMMSKAMRKFAGNL 120

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ + + G++T
Sbjct: 121 NNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKNGEEVIGSET 180

Query: 251 RVKVV 255
           RVKVV
Sbjct: 181 RVKVV 185


>gi|307343410|emb|CBJ18146.1| recombinase A [Micromonospora sp. CR30]
 gi|307343412|emb|CBJ18147.1| recombinase A [Micromonospora sp. CR36]
          Length = 184

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 130/184 (70%), Positives = 157/184 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVASAQRAGGIAAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   +L+SQPDTGEQALEI DML+RSGA+D+IVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGAIDVIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVRL 231
           SVRL
Sbjct: 181 SVRL 184


>gi|199595012|gb|ACH90970.1| RecA [Stenotrophomonas maltophilia]
 gi|199595016|gb|ACH90972.1| RecA [Stenotrophomonas maltophilia]
 gi|199595048|gb|ACH90988.1| RecA [Stenotrophomonas maltophilia]
 gi|199595058|gb|ACH90993.1| RecA [Stenotrophomonas maltophilia]
          Length = 182

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 136/182 (74%), Positives = 158/182 (86%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +E + +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKMGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+V+DSVAALTP+AE
Sbjct: 61  AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVVDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS  +++FINQ+RMKIGVM    SPETTTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPETTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|52141707|ref|YP_085121.1| recA protein (recombinase A), N-terminal region [Bacillus cereus
           E33L]
 gi|206972635|ref|ZP_03233577.1| RecA protein [Bacillus cereus AH1134]
 gi|217961201|ref|YP_002339769.1| protein RecA [Bacillus cereus AH187]
 gi|222097226|ref|YP_002531283.1| reca protein (recombinase a), n-terminal region [Bacillus cereus
           Q1]
 gi|228986924|ref|ZP_04147051.1| Endonuclease PI-MboI [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|229071278|ref|ZP_04204502.1| Endonuclease PI-MboI [Bacillus cereus F65185]
 gi|229081034|ref|ZP_04213546.1| Endonuclease PI-MboI [Bacillus cereus Rock4-2]
 gi|229092818|ref|ZP_04223956.1| Endonuclease PI-MboI [Bacillus cereus Rock3-42]
 gi|229140421|ref|ZP_04268976.1| Endonuclease PI-MboI [Bacillus cereus BDRD-ST26]
 gi|229180058|ref|ZP_04307402.1| Endonuclease PI-MboI [Bacillus cereus 172560W]
 gi|229197891|ref|ZP_04324607.1| Endonuclease PI-MboI [Bacillus cereus m1293]
 gi|51975176|gb|AAU16726.1| recA protein (recombinase A), N-terminal region [Bacillus cereus
           E33L]
 gi|206732448|gb|EDZ49628.1| RecA protein [Bacillus cereus AH1134]
 gi|217063049|gb|ACJ77299.1| protein RecA [Bacillus cereus AH187]
 gi|221241284|gb|ACM13994.1| recA protein (recombinase A), N-terminal region [Bacillus cereus
           Q1]
 gi|228585609|gb|EEK43711.1| Endonuclease PI-MboI [Bacillus cereus m1293]
 gi|228603267|gb|EEK60744.1| Endonuclease PI-MboI [Bacillus cereus 172560W]
 gi|228642982|gb|EEK99258.1| Endonuclease PI-MboI [Bacillus cereus BDRD-ST26]
 gi|228690616|gb|EEL44397.1| Endonuclease PI-MboI [Bacillus cereus Rock3-42]
 gi|228702264|gb|EEL54738.1| Endonuclease PI-MboI [Bacillus cereus Rock4-2]
 gi|228711899|gb|EEL63850.1| Endonuclease PI-MboI [Bacillus cereus F65185]
 gi|228772873|gb|EEM21312.1| Endonuclease PI-MboI [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 208

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 134/203 (66%), Positives = 170/203 (83%), Gaps = 2/203 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG Q      +  VSSGSL LD+ALG+GG+P+GRI+
Sbjct: 3   DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RRVSTVSSGSLALDVALGVGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPDTG
Sbjct: 61  EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGS 213
           ++SK I +FINQ+R K+GVMFG+
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGN 203


>gi|68637458|emb|CAF21824.1| recombinase A [Pediococcus pentosaceus]
          Length = 200

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 130/197 (65%), Positives = 166/197 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  + SGSL LD ALG+GGFPKGRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   ISTIPSGSLALDDALGVGGFPKGRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGVD+ +LL+SQPDTGE+ L I D LV SGA+D++VIDSVAAL PRAEI+
Sbjct: 62  NAMDPAYATNLGVDIDSLLLSQPDTGEEGLAIADALVSSGAIDLVVIDSVAALVPRAEID 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QAR+MSQALRKL+ SI+++K I +FINQ+R K+G+MFG+PETT GG ALK
Sbjct: 122 GEMGDAHVGLQARMMSQALRKLSGSINKTKTIALFINQIREKVGIMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FY+++RL++RR   IKD
Sbjct: 182 FYATIRLEVRRAEQIKD 198


>gi|323339162|gb|ADX41570.1| DNA recombinase [Mesorhizobium sp. TM1]
          Length = 171

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 134/171 (78%), Positives = 157/171 (91%), Gaps = 1/171 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 2   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 61  IEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMS
Sbjct: 121 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMS 171


>gi|68637203|emb|CAF21769.1| recombinase A [Lactobacillus graminis]
          Length = 200

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 131/197 (66%), Positives = 167/197 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +  VSSGSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   VSTVSSGSLALDEALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGV++ +LL+SQPDTGEQ LEI D L+ SGAVDI+V+DSVAAL PRAEIE
Sbjct: 62  NAMDPKYATALGVNIDDLLLSQPDTGEQGLEIADALISSGAVDILVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQA RKL+ +I+++K I +FINQ+R K+GVMFG+PE T GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQAYRKLSGTINKTKTIALFINQIREKVGVMFGNPEITPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FYS+VRL++RR  +IK+
Sbjct: 182 FYSTVRLEVRRAETIKN 198


>gi|68637368|emb|CAF21806.1| recombinase A [Lactobacillus vitulinus]
          Length = 200

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 128/196 (65%), Positives = 166/196 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+ SGSL LD+ALGIGG+PKGRI+EIYGPESSGKTTL LH IA+ QK GG  AF+DAE
Sbjct: 2   VDVIPSGSLTLDLALGIGGYPKGRIIEIYGPESSGKTTLTLHAIAECQKQGGKAAFIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HA+D +YA+ LGVD+  L++SQPD+GEQ LEI +MLVRSG +D++V+DSVAAL P+ E++
Sbjct: 62  HAIDPVYAKNLGVDVDELILSQPDSGEQGLEIAEMLVRSGVIDLVVVDSVAALVPQVELD 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+M +   G+QARLMS+ALRKL+  ++++ C ++FINQ+R KIGVMFG+PETTTGG ALK
Sbjct: 122 GEMSDQNMGLQARLMSKALRKLSGIMNKTSCTVIFINQLREKIGVMFGNPETTTGGRALK 181

Query: 225 FYSSVRLDIRRVGSIK 240
           FYSSVR++IRR   IK
Sbjct: 182 FYSSVRIEIRRSEQIK 197


>gi|228909604|ref|ZP_04073427.1| Endonuclease PI-MboI [Bacillus thuringiensis IBL 200]
 gi|229098250|ref|ZP_04229197.1| Endonuclease PI-MboI [Bacillus cereus Rock3-29]
 gi|229117267|ref|ZP_04246645.1| Endonuclease PI-MboI [Bacillus cereus Rock1-3]
 gi|228666167|gb|EEL21631.1| Endonuclease PI-MboI [Bacillus cereus Rock1-3]
 gi|228685148|gb|EEL39079.1| Endonuclease PI-MboI [Bacillus cereus Rock3-29]
 gi|228849893|gb|EEM94724.1| Endonuclease PI-MboI [Bacillus thuringiensis IBL 200]
          Length = 208

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 134/203 (66%), Positives = 170/203 (83%), Gaps = 2/203 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG Q      I  +SSGSL LD+ALG+GG+P+GRI+
Sbjct: 3   DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RRISTISSGSLALDVALGVGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPDTG
Sbjct: 61  EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGS 213
           ++SK I +FINQ+R K+GVMFG+
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGN 203


>gi|15827469|ref|NP_301732.1| RecA protein [Mycobacterium leprae TN]
 gi|221229946|ref|YP_002503362.1| RecA protein [Mycobacterium leprae Br4923]
 gi|548715|sp|P35901|RECA_MYCLE RecName: Full=Protein RecA; AltName: Full=Recombinase A; Contains:
           RecName: Full=Mle RecA intein
 gi|397565|emb|CAA52040.1| recA [Mycobacterium leprae]
 gi|467094|gb|AAA17277.1| recA [Mycobacterium leprae]
 gi|13093019|emb|CAC31368.1| RecA protein [Mycobacterium leprae]
 gi|219933053|emb|CAR71082.1| RecA protein [Mycobacterium leprae Br4923]
          Length = 711

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 134/210 (63%), Positives = 172/210 (81%), Gaps = 2/210 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR
Sbjct: 4   VPDREKALELAMAQIEKNYGKGSVMRLGDE--MCQPISVIPTGSIALDVALGIGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHAL+  YA+KLGVD  +LL+SQPD
Sbjct: 62  IVEIYGPESSGKTTVALHAVANAQAVGGVAAFIDAEHALEPEYAKKLGVDTDSLLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T 
Sbjct: 122 TGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSYVGLQARLMSQALRKMTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTT 218
           ++S S    +FINQ+R KIGVMFG    +T
Sbjct: 182 ALSNSGTTAIFINQLREKIGVMFGCMNYST 211



 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 86/178 (48%), Positives = 123/178 (69%), Gaps = 6/178 (3%)

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLD 232
           + AR++   ++  T S++R   I V  N      GVM   SPETTTGG ALKFY+SVR+D
Sbjct: 532 VPARVLDVHVKLSTRSMNRFD-IEVEGNHNYFVDGVMVHNSPETTTGGKALKFYASVRMD 590

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           +RR+ ++KD     GN+TRVK+VKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   V
Sbjct: 591 VRRIETLKDGVDAVGNRTRVKIVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVEQGFV 650

Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA----DSLLQEP 346
            KSG+WF+++G++LGQG+EN++ FL EN ++A  IE  +++  G+ A    D +L  P
Sbjct: 651 RKSGSWFTYEGEQLGQGKENARNFLLENADVANEIEKKIKEKLGIGAVVTDDDILPTP 708


>gi|199595052|gb|ACH90990.1| RecA [Stenotrophomonas maltophilia]
 gi|199595060|gb|ACH90994.1| RecA [Stenotrophomonas maltophilia]
 gi|301318406|gb|ADK67118.1| RecA protein [Stenotrophomonas maltophilia]
          Length = 182

 Score =  281 bits (718), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 137/182 (75%), Positives = 158/182 (86%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +E + +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKMGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+VIDSVAALTP+AE
Sbjct: 61  AEHALDPIYAGKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVIDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS  +++FINQ+RMKIGVM    SPETTTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPETTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|307343382|emb|CBJ18132.1| recombinase A [Micromonospora sp. GUI19]
          Length = 183

 Score =  281 bits (718), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 132/182 (72%), Positives = 157/182 (86%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH++A +Q+ GG  AF+DAEHALD 
Sbjct: 2   TGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHSVASAQRLGGIAAFIDAEHALDP 61

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
            YA+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+
Sbjct: 62  EYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGEMGD 121

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           S  G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SV
Sbjct: 122 SHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASV 181

Query: 230 RL 231
           RL
Sbjct: 182 RL 183


>gi|307343374|emb|CBJ18128.1| recombinase A [Micromonospora sp. GUI12]
          Length = 184

 Score =  281 bits (718), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 132/184 (71%), Positives = 156/184 (84%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YAR LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYARALGVDTDALLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALK Y+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYA 180

Query: 228 SVRL 231
           SVRL
Sbjct: 181 SVRL 184


>gi|158147277|gb|ABW22692.1| recA [Sinorhizobium sp. CCBAU 83622]
 gi|158147285|gb|ABW22696.1| recA [Sinorhizobium sp. CCBAU 83666]
 gi|158147299|gb|ABW22703.1| recA [Sinorhizobium sp. CCBAU 83751]
 gi|325512829|gb|ADZ23603.1| RecA [Sinorhizobium fredii]
 gi|325512835|gb|ADZ23606.1| RecA [Sinorhizobium fredii]
          Length = 158

 Score =  281 bits (718), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 133/158 (84%), Positives = 149/158 (94%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD
Sbjct: 1   STGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG
Sbjct: 61  PIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           +SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 121 DSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 158


>gi|114150698|gb|ABI51995.1| recombinase A [Pseudomonas sp. PTB2071]
          Length = 183

 Score =  281 bits (718), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 130/183 (71%), Positives = 160/183 (87%)

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           DAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IV+DSVAAL P+A
Sbjct: 1   DAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKA 60

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
           EIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFGSPETTTGGN
Sbjct: 61  EIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGN 120

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE 281
           ALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+YG+GI   GE
Sbjct: 121 ALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQILYGKGIYLNGE 180

Query: 282 LID 284
           +ID
Sbjct: 181 MID 183


>gi|50881446|gb|AAT85291.1| DNA repair protein recA, putative [Oryza sativa Japonica Group]
          Length = 395

 Score =  281 bits (718), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 150/328 (45%), Positives = 205/328 (62%), Gaps = 46/328 (14%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN     KAL+AA++ I   +GKG++ +LGS G  F  +E   SG L LD ALG GG PK
Sbjct: 83  MNNNVMQKALDAAMNDINSSFGKGSVTRLGSAGGAF--VETFPSGCLTLDFALG-GGLPK 139

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE+YGPESSGKTTLALH IA+ QK GG    VDAEHA D  Y++ LGVD++NL+   
Sbjct: 140 GRVVEVYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDIENLI--- 196

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
                                                 G++G    G+QARLMSQALRK+
Sbjct: 197 --------------------------------------GEIGMQQMGLQARLMSQALRKM 218

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--DS 244
           + + S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++SVRL+IR +G IK    D 
Sbjct: 219 SGNASKAGCTLMFLNQIRYKIGVFYGNPEVTSGGIALKFFASVRLEIRPIGKIKSAKGDE 278

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
             G + RV+V K+K++ P+KQ EF+I++GEG+S  G ++D      +V K G+W+S+K  
Sbjct: 279 DVGVKVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCVLDCAELMEVVAKKGSWYSYKEM 338

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLR 332
           RLGQGRE +  +LRE+  I + IE  +R
Sbjct: 339 RLGQGREKALQYLRESPTICDEIEKAVR 366


>gi|311352248|gb|ADP93309.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352250|gb|ADP93310.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352252|gb|ADP93311.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352254|gb|ADP93312.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352256|gb|ADP93313.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352258|gb|ADP93314.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352260|gb|ADP93315.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352262|gb|ADP93316.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352264|gb|ADP93317.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352266|gb|ADP93318.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352268|gb|ADP93319.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352270|gb|ADP93320.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352272|gb|ADP93321.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352274|gb|ADP93322.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352276|gb|ADP93323.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352278|gb|ADP93324.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352280|gb|ADP93325.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352282|gb|ADP93326.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352284|gb|ADP93327.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352286|gb|ADP93328.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352288|gb|ADP93329.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352290|gb|ADP93330.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352292|gb|ADP93331.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352294|gb|ADP93332.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352296|gb|ADP93333.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352298|gb|ADP93334.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352300|gb|ADP93335.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352302|gb|ADP93336.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352304|gb|ADP93337.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352306|gb|ADP93338.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352308|gb|ADP93339.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352310|gb|ADP93340.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352312|gb|ADP93341.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352314|gb|ADP93342.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352316|gb|ADP93343.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352318|gb|ADP93344.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352320|gb|ADP93345.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352322|gb|ADP93346.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352324|gb|ADP93347.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352326|gb|ADP93348.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352328|gb|ADP93349.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352330|gb|ADP93350.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352332|gb|ADP93351.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352334|gb|ADP93352.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352336|gb|ADP93353.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352338|gb|ADP93354.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352340|gb|ADP93355.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352342|gb|ADP93356.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352344|gb|ADP93357.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352346|gb|ADP93358.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352348|gb|ADP93359.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352350|gb|ADP93360.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352352|gb|ADP93361.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352354|gb|ADP93362.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352356|gb|ADP93363.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352358|gb|ADP93364.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352360|gb|ADP93365.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352362|gb|ADP93366.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352364|gb|ADP93367.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352366|gb|ADP93368.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352368|gb|ADP93369.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352370|gb|ADP93370.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352372|gb|ADP93371.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352374|gb|ADP93372.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352376|gb|ADP93373.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352378|gb|ADP93374.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352380|gb|ADP93375.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352382|gb|ADP93376.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352384|gb|ADP93377.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352386|gb|ADP93378.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352388|gb|ADP93379.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352390|gb|ADP93380.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352392|gb|ADP93381.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352394|gb|ADP93382.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352396|gb|ADP93383.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352398|gb|ADP93384.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352400|gb|ADP93385.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352402|gb|ADP93386.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352404|gb|ADP93387.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352406|gb|ADP93388.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352408|gb|ADP93389.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352410|gb|ADP93390.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352412|gb|ADP93391.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352414|gb|ADP93392.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352416|gb|ADP93393.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352418|gb|ADP93394.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352420|gb|ADP93395.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352422|gb|ADP93396.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352424|gb|ADP93397.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352426|gb|ADP93398.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352428|gb|ADP93399.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352430|gb|ADP93400.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352432|gb|ADP93401.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352434|gb|ADP93402.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352436|gb|ADP93403.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352438|gb|ADP93404.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352440|gb|ADP93405.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352442|gb|ADP93406.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352444|gb|ADP93407.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352446|gb|ADP93408.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352448|gb|ADP93409.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352450|gb|ADP93410.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352452|gb|ADP93411.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352454|gb|ADP93412.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352456|gb|ADP93413.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352458|gb|ADP93414.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352460|gb|ADP93415.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352462|gb|ADP93416.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352464|gb|ADP93417.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352466|gb|ADP93418.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352468|gb|ADP93419.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352470|gb|ADP93420.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352472|gb|ADP93421.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352474|gb|ADP93422.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352476|gb|ADP93423.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352478|gb|ADP93424.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352480|gb|ADP93425.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352482|gb|ADP93426.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352484|gb|ADP93427.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352486|gb|ADP93428.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352488|gb|ADP93429.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352490|gb|ADP93430.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352492|gb|ADP93431.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352494|gb|ADP93432.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352496|gb|ADP93433.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352498|gb|ADP93434.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352500|gb|ADP93435.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352502|gb|ADP93436.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352504|gb|ADP93437.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352506|gb|ADP93438.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352508|gb|ADP93439.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352510|gb|ADP93440.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352512|gb|ADP93441.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352514|gb|ADP93442.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352516|gb|ADP93443.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352518|gb|ADP93444.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352520|gb|ADP93445.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352522|gb|ADP93446.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352524|gb|ADP93447.1| DNA recombinase protein RecA [Clostridium perfringens]
          Length = 188

 Score =  281 bits (718), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 129/187 (68%), Positives = 165/187 (88%)

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YA++LGV++ +L++SQPDTGEQALEIT+ LVRSGA+D++V+DSVAAL PRAEIEG+MG+
Sbjct: 2   VYAKRLGVNIDDLVVSQPDTGEQALEITEALVRSGAIDVLVVDSVAALVPRAEIEGEMGD 61

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           S  G+QARLMSQALRKLT +I++S C+++FINQ+R K+G+MFG+PETT GG ALKFY+SV
Sbjct: 62  SHVGLQARLMSQALRKLTGTINKSNCVVIFINQLREKVGIMFGNPETTPGGRALKFYASV 121

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
           R+DIRR+ SIK  D ITGN+TRVK+VKNK+A PFKQ EFDIMY EGIS  G ++D+GVK 
Sbjct: 122 RMDIRRIDSIKQGDGITGNRTRVKIVKNKVAPPFKQAEFDIMYNEGISKEGNIVDVGVKE 181

Query: 290 SIVDKSG 296
           +IV KSG
Sbjct: 182 NIVQKSG 188


>gi|68635405|emb|CAF21756.1| recombinase A [Lactobacillus collinoides]
          Length = 200

 Score =  281 bits (718), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 130/197 (65%), Positives = 167/197 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  +SSGSL LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   ISTISSGSLALDNALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKQGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD  YA  LGV++ +LL+SQPDTGEQ LEI D LV SGAVD++V+DSVAAL PRAEI+
Sbjct: 62  NALDPAYATNLGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDLLVVDSVAALVPRAEID 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ +I+++  I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTINKTHTIAMFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FY++VRL+IRR   IK+
Sbjct: 182 FYATVRLEIRRAEQIKE 198


>gi|217037932|gb|ACJ76434.1| RecA [Bradyrhizobium sp. STM 3562]
          Length = 181

 Score =  281 bits (718), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 135/180 (75%), Positives = 160/180 (88%), Gaps = 1/180 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           K L AALSQI+R +GKG++M+LG      + +E VSSGSLGLDIALG+GG PKGRIVEIY
Sbjct: 2   KRLSAALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRIVEIY 60

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQA
Sbjct: 61  GPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQA 120

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI D LVRSGAVD++V+DSVAAL PRAE+EG+MGE+LPG+QARLMSQALRKLT+SI++S
Sbjct: 121 LEICDTLVRSGAVDVLVVDSVAALVPRAELEGEMGEALPGLQARLMSQALRKLTASINKS 180


>gi|255040345|gb|ACT99985.1| recombinase A [Lactobacillus sp. BL302]
          Length = 201

 Score =  281 bits (718), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 128/196 (65%), Positives = 166/196 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  + SGSL LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 6   ISTIPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 65

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+
Sbjct: 66  NAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEID 125

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG+S  G+QARLMSQALRKL+ +IS++K I VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 126 GDMGDSHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGVMFGNPETTPGGRALK 185

Query: 225 FYSSVRLDIRRVGSIK 240
           FYS++RL++RR   IK
Sbjct: 186 FYSTIRLEVRRAEQIK 201


>gi|213012582|gb|ACJ38857.1| recombination-repair protein [Vibrio sp. R-775]
          Length = 194

 Score =  281 bits (718), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 132/194 (68%), Positives = 165/194 (85%)

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL L  + Q    G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI 
Sbjct: 1   SGKTTLTLDLLLQRNAKGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEIC 60

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ 
Sbjct: 61  DALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMC 120

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKN
Sbjct: 121 IFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKN 180

Query: 258 KMASPFKQVEFDIM 271
           K+A+PFK+    IM
Sbjct: 181 KIAAPFKEANTQIM 194


>gi|325512801|gb|ADZ23589.1| RecA [Sinorhizobium fredii]
          Length = 158

 Score =  281 bits (718), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 133/158 (84%), Positives = 149/158 (94%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD 
Sbjct: 1   TGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+
Sbjct: 61  IYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKI
Sbjct: 121 SLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKI 158


>gi|199595008|gb|ACH90968.1| RecA [Stenotrophomonas maltophilia]
 gi|199595050|gb|ACH90989.1| RecA [Stenotrophomonas maltophilia]
 gi|199595064|gb|ACH90996.1| RecA [Stenotrophomonas maltophilia]
          Length = 182

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 137/182 (75%), Positives = 158/182 (86%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +E + +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKLGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+VIDSVAALTP+AE
Sbjct: 61  AEHALDPIYAGKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVIDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS  +++FINQ+RMKIGVM    SPETTTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPETTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|229174446|ref|ZP_04301978.1| Endonuclease PI-MboI [Bacillus cereus MM3]
 gi|228609006|gb|EEK66296.1| Endonuclease PI-MboI [Bacillus cereus MM3]
          Length = 208

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 134/203 (66%), Positives = 170/203 (83%), Gaps = 2/203 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG Q      I  +SSGSL LD+ALG+GG+P+GRI+
Sbjct: 3   DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RRISTISSGSLALDVALGVGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPDTG
Sbjct: 61  EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGS 213
           ++SK I +FINQ+R K+GVMFG+
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGN 203


>gi|68637198|emb|CAF21768.1| recombinase A [Lactobacillus gasseri]
          Length = 200

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 128/196 (65%), Positives = 166/196 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  + SGSL LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   ISTIPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+
Sbjct: 62  NAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEID 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG+S  G+QARLMSQALRKL+ +IS++K I VFINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GDMGDSHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIK 240
           FYS++RL++RR   IK
Sbjct: 182 FYSTIRLEVRRAEQIK 197


>gi|68637256|emb|CAF21779.1| recombinase A [Lactobacillus intestinalis]
          Length = 200

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 128/196 (65%), Positives = 166/196 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  V +GS+ LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   ISTVPTGSIALDAALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIE
Sbjct: 62  NAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG++  G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GDMGDAHVGLQARLMSQALRKLSGTISKTKTIALFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIK 240
           FYS++RL++RR   IK
Sbjct: 182 FYSTIRLEVRRAEQIK 197


>gi|29652160|gb|AAO87741.1| RecA [Listeria monocytogenes]
          Length = 200

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 134/201 (66%), Positives = 167/201 (83%), Gaps = 2/201 (0%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESS
Sbjct: 2   ALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESS 59

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI +
Sbjct: 60  GKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAE 119

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +
Sbjct: 120 ALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAI 179

Query: 199 FINQMRMKIGVMFGSPETTTG 219
           FINQ+R K+GVMFG+PE T G
Sbjct: 180 FINQIREKVGVMFGNPEITPG 200


>gi|325651191|emb|CBY89417.1| RecA protein [Mesorhizobium sp. R-45568]
          Length = 171

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 133/170 (78%), Positives = 156/170 (91%), Gaps = 1/170 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           +R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTL
Sbjct: 1   ERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRS
Sbjct: 60  ALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           GA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS
Sbjct: 120 GAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRS 169


>gi|29652220|gb|AAO87771.1| RecA [Listeria monocytogenes]
          Length = 201

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 134/201 (66%), Positives = 167/201 (83%), Gaps = 2/201 (0%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESS
Sbjct: 3   ALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESS 60

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI +
Sbjct: 61  GKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAE 120

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +
Sbjct: 121 ALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAI 180

Query: 199 FINQMRMKIGVMFGSPETTTG 219
           FINQ+R K+GVMFG+PE T G
Sbjct: 181 FINQIREKVGVMFGNPEITPG 201


>gi|169792005|gb|ACA80306.1| recombination protein A [Sinorhizobium meliloti]
          Length = 169

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 136/168 (80%), Positives = 155/168 (92%), Gaps = 1/168 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TI
Sbjct: 3   KGSVMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 61

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI
Sbjct: 62  AEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDI 121

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           +VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C+
Sbjct: 122 LVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNCM 169


>gi|229031411|ref|ZP_04187412.1| Endonuclease PI-MboI [Bacillus cereus AH1271]
 gi|229162716|ref|ZP_04290673.1| Endonuclease PI-MboI [Bacillus cereus R309803]
 gi|228620598|gb|EEK77467.1| Endonuclease PI-MboI [Bacillus cereus R309803]
 gi|228729906|gb|EEL80885.1| Endonuclease PI-MboI [Bacillus cereus AH1271]
          Length = 208

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 133/203 (65%), Positives = 170/203 (83%), Gaps = 2/203 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG Q      +  +SSGSL LD+ALG+GG+P+GRI+
Sbjct: 3   DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RRVSTISSGSLALDVALGVGGYPRGRII 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPDTG
Sbjct: 61  EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGS 213
           ++SK I +FINQ+R K+GVMFG+
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGN 203


>gi|169791999|gb|ACA80303.1| recombination protein A [Sinorhizobium meliloti]
          Length = 168

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 136/167 (81%), Positives = 154/167 (92%), Gaps = 1/167 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TI
Sbjct: 3   KGSVMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 61

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI
Sbjct: 62  AEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDI 121

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           +VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C
Sbjct: 122 LVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNC 168


>gi|289812933|gb|ADD20927.1| recombinase A [Rhizobium sp. CCBAU 53004-5]
          Length = 160

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 132/160 (82%), Positives = 151/160 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSL LDIALGIGG PKGRI+EI GPESSGKTTLAL TIA++QK GG CAFVDAEHAL
Sbjct: 1   VSTGSLSLDIALGIGGLPKGRIIEILGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+M
Sbjct: 61  DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           G+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKI
Sbjct: 121 GDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKI 160


>gi|169792003|gb|ACA80305.1| recombination protein A [Sinorhizobium meliloti]
          Length = 169

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 136/168 (80%), Positives = 155/168 (92%), Gaps = 1/168 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TI
Sbjct: 3   KGSVMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 61

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI
Sbjct: 62  AEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDI 121

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           +VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C+
Sbjct: 122 LVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNCM 169


>gi|169792001|gb|ACA80304.1| recombination protein A [Sinorhizobium meliloti]
          Length = 168

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 136/167 (81%), Positives = 154/167 (92%), Gaps = 1/167 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TI
Sbjct: 3   KGSVMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 61

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI
Sbjct: 62  AEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDI 121

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           +VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C
Sbjct: 122 LVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNC 168


>gi|199595066|gb|ACH90997.1| RecA [Stenotrophomonas maltophilia]
          Length = 182

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 136/182 (74%), Positives = 158/182 (86%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +E + +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKLGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+V+DSVAALTP+AE
Sbjct: 61  AEHALDPIYAGKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVVDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS  +++FINQ+RMKIGVM    SPETTTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPETTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|29652134|gb|AAO87728.1| RecA [Listeria monocytogenes]
 gi|29652234|gb|AAO87778.1| RecA [Listeria monocytogenes]
          Length = 199

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 134/201 (66%), Positives = 167/201 (83%), Gaps = 2/201 (0%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESS
Sbjct: 1   ALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESS 58

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI +
Sbjct: 59  GKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAE 118

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +
Sbjct: 119 ALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAI 178

Query: 199 FINQMRMKIGVMFGSPETTTG 219
           FINQ+R K+GVMFG+PE T G
Sbjct: 179 FINQIREKVGVMFGNPEITPG 199


>gi|291246121|gb|ADD85185.1| RecA [Borrelia recurrentis]
          Length = 219

 Score =  280 bits (716), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 131/210 (62%), Positives = 179/210 (85%), Gaps = 1/210 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+++++G +  + + +E + SG + LD A+GIGG+P+GR+VEI+GPESSGKTTL L 
Sbjct: 3   FGKGSLIKMG-ESPVGKYLESIPSGFILLDEAIGIGGYPRGRVVEIFGPESSGKTTLTLQ 61

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QKTGG  AF+DAEHALD +YAR LGV++  L +SQPDTGEQAL+I + L+RSG V
Sbjct: 62  AIAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQPDTGEQALDIAEYLIRSGGV 121

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAAL P+AEI+G+MG++  G+QARLMS+ALRK+T+ +S+S   ++FINQ+RMK
Sbjct: 122 DLIVVDSVAALMPQAEIDGEMGDTQIGLQARLMSKALRKITAILSKSNACIMFINQIRMK 181

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           IG++FGSPETTTGGNALKFYSS+RL++R+V
Sbjct: 182 IGLVFGSPETTTGGNALKFYSSLRLEVRKV 211


>gi|329770648|emb|CBX32267.1| recombinase A [Bradyrhizobium sp. BR 3609]
          Length = 180

 Score =  280 bits (716), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 135/179 (75%), Positives = 159/179 (88%), Gaps = 1/179 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG      + +E VSSGSLGLDIALG+GG PKGRI
Sbjct: 3   MDKSKALSAALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+
Sbjct: 122 GEQALEIADTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTA 180


>gi|193090223|gb|ACF15283.1| recombination protein A [Bradyrhizobium sp. CCBAU 65718]
          Length = 167

 Score =  280 bits (716), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 131/166 (78%), Positives = 154/166 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 2   IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 62  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIGVM
Sbjct: 122 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVM 167


>gi|307343438|emb|CBJ18160.1| recombinase A [Micromonospora sp. SGB14]
          Length = 180

 Score =  280 bits (716), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 131/180 (72%), Positives = 155/180 (86%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPDY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   LL+SQPDTGEQALEITDMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDALLVSQPDTGEQALEITDMLVRSGAIDIVVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
            G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRL
Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRL 180


>gi|158631786|gb|ABW74998.1| RecA [Rhizobium sp. CCBAU 83490]
          Length = 168

 Score =  280 bits (716), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 132/166 (79%), Positives = 154/166 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSLGLDIALG+GG P+GRI++IYG ESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 3   IETISTGSLGLDIALGVGGLPRGRIIKIYGKESSGKTTLALQTIAEAQKKGGICAFVDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE
Sbjct: 63  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMK  VM
Sbjct: 123 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKSAVM 168


>gi|68637245|emb|CAF21777.1| recombinase A [Lactobacillus kunkeei]
          Length = 200

 Score =  280 bits (716), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 132/197 (67%), Positives = 166/197 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  V +GSL LD ALG+GGFP+G IVEIYGPESSGKTT+AL  +A+ QK GGT A++DAE
Sbjct: 2   ISTVPTGSLALDNALGVGGFPRGTIVEIYGPESSGKTTIALQAVAEVQKQGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD +YA  LGV++ +LL+SQPDTGEQ L+I D LV SGA+DI+V+DSVAAL PRAEIE
Sbjct: 62  NALDPVYATNLGVNIDDLLLSQPDTGEQGLQICDALVSSGAIDIVVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+P+TT GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGVMFGNPKTTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FYS++RL+IRR   IKD
Sbjct: 182 FYSTIRLEIRRAEQIKD 198


>gi|329770804|emb|CBX32345.1| recombinase A [Bradyrhizobium sp. BR 3715]
 gi|329770806|emb|CBX32346.1| recombinase A [Bradyrhizobium sp. BR 3716]
          Length = 180

 Score =  280 bits (716), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 135/179 (75%), Positives = 159/179 (88%), Gaps = 1/179 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG      + IE +SSGSLGLDIALG+GG PKGRI
Sbjct: 3   MDKSKALSAALSQIERQFGKGSVMKLGKNDRSMD-IETISSGSLGLDIALGVGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+
Sbjct: 122 GEQALEIADTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTA 180


>gi|329770654|emb|CBX32270.1| recombinase A [Bradyrhizobium sp. BR 10115]
 gi|329770656|emb|CBX32271.1| recombinase A [Bradyrhizobium sp. BR 10114]
 gi|329770658|emb|CBX32272.1| recombinase A [Bradyrhizobium sp. BR 3791]
 gi|329770660|emb|CBX32273.1| recombinase A [Bradyrhizobium sp. BR 3792]
 gi|329770662|emb|CBX32274.1| recombinase A [Bradyrhizobium sp. BR 3794]
 gi|329770664|emb|CBX32275.1| recombinase A [Bradyrhizobium sp. BR 3796]
 gi|329770666|emb|CBX32276.1| recombinase A [Bradyrhizobium sp. BR 10113]
 gi|329770706|emb|CBX32296.1| recombinase A [Bradyrhizobium sp. BR 3750]
 gi|329770736|emb|CBX32311.1| recombinase A [Bradyrhizobium sp. BR 3671]
          Length = 180

 Score =  280 bits (716), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 135/179 (75%), Positives = 159/179 (88%), Gaps = 1/179 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG      + +E VSSGSLGLDIALG+GG PKGRI
Sbjct: 3   MDKSKALSAALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+
Sbjct: 122 GEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTA 180


>gi|29652019|gb|AAO87672.1| RecA [Listeria monocytogenes]
 gi|29652090|gb|AAO87707.1| RecA [Listeria monocytogenes]
 gi|29652272|gb|AAO87797.1| RecA [Listeria monocytogenes]
 gi|29652298|gb|AAO87810.1| RecA [Listeria monocytogenes]
          Length = 199

 Score =  280 bits (716), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 134/201 (66%), Positives = 167/201 (83%), Gaps = 2/201 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MRMKIGVMFGSPETTTGGNAL 223
           +R K+GVMFG+PE T GG AL
Sbjct: 179 IREKVGVMFGNPEITPGGRAL 199


>gi|307343344|emb|CBJ18113.1| recombinase A [Micromonospora matsumotoense]
          Length = 184

 Score =  280 bits (716), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 132/184 (71%), Positives = 157/184 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +++ S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHAL
Sbjct: 1   ITTRSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPDYAKALGVDTDALLVSQPDTGEQALEIVDMLVRSGAIDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVRL 231
           SVRL
Sbjct: 181 SVRL 184


>gi|89143241|emb|CAJ57515.1| recombinase A [Microbacterium esteraromaticum]
          Length = 188

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 132/187 (70%), Positives = 157/187 (83%)

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ GG  AF+DAEHALD  YARKLGVD+  LL+SQPDTGEQALEI DML+RSGA+D++V
Sbjct: 1   AQRAGGIAAFIDAEHALDPEYARKLGVDIDQLLVSQPDTGEQALEIADMLIRSGAIDLVV 60

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAAL P AEI+G+MG+S  G+QARLMSQALRKLT  ++++K   +FINQ+R KIGV 
Sbjct: 61  IDSVAALVPEAEIKGEMGDSHVGLQARLMSQALRKLTGGLNQTKTTAIFINQLREKIGVF 120

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA PFKQ EFDI
Sbjct: 121 FGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKMAPPFKQAEFDI 180

Query: 271 MYGEGIS 277
           +YG GIS
Sbjct: 181 LYGIGIS 187


>gi|195928218|gb|ACG55765.1| recombination protein A [Bradyrhizobium sp. STM 3956]
          Length = 181

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 134/181 (74%), Positives = 161/181 (88%), Gaps = 1/181 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG      + +E VSSGSLGLDIALGIGG PKGRIVEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGIGGLPKGRIVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 121 DTLVRSGAVDVMVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 180

Query: 198 V 198
           +
Sbjct: 181 I 181


>gi|68637320|emb|CAF21795.1| recombinase A [Lactobacillus psittaci]
          Length = 200

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 127/196 (64%), Positives = 167/196 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  V +GSL LD ALG+GG+P+GRIVE+YGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   ISTVPTGSLALDAALGVGGYPRGRIVEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA+ LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIE
Sbjct: 62  NAMDPAYAQALGVDIDSLILSQPNTGEEGLQIADTLITSGAIDILVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GEMGDSHVGLQARLMSQALRKLSGNINKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIK 240
           FYS++RL++RR   IK
Sbjct: 182 FYSTIRLEVRRAEQIK 197


>gi|199595028|gb|ACH90978.1| RecA [Stenotrophomonas maltophilia]
 gi|199595080|gb|ACH91004.1| RecA [Stenotrophomonas maltophilia]
 gi|199595086|gb|ACH91007.1| RecA [Stenotrophomonas maltophilia]
 gi|301318408|gb|ADK67119.1| RecA protein [Stenotrophomonas maltophilia]
 gi|301318410|gb|ADK67120.1| RecA protein [Stenotrophomonas maltophilia]
 gi|301318412|gb|ADK67121.1| RecA protein [Stenotrophomonas maltophilia]
 gi|301318416|gb|ADK67123.1| RecA protein [Stenotrophomonas maltophilia]
 gi|301318420|gb|ADK67125.1| RecA protein [Stenotrophomonas maltophilia]
 gi|301318428|gb|ADK67129.1| RecA protein [Stenotrophomonas maltophilia]
          Length = 182

 Score =  280 bits (715), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 136/182 (74%), Positives = 157/182 (86%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +E + +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKLGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+V+DSVAALTP+AE
Sbjct: 61  AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVVDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS  ++VFINQ+RMKIGVM    SPE TTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPEVTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|296516858|emb|CBM35922.1| recombination protein A [Bradyrhizobium sp. CAH53]
          Length = 178

 Score =  280 bits (715), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 133/179 (74%), Positives = 160/179 (89%), Gaps = 1/179 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G++M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A
Sbjct: 1   GSVMKLGKSDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           ++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++
Sbjct: 60  EAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVL 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIG
Sbjct: 120 VVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIG 178


>gi|307343362|emb|CBJ18122.1| recombinase A [Micromonospora siamensis]
          Length = 179

 Score =  280 bits (715), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 132/179 (73%), Positives = 154/179 (86%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHALD  Y
Sbjct: 1   SIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   LL+SQPDTGEQALEITDMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDALLVSQPDTGEQALEITDMLVRSGAIDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
            G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR
Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVR 179


>gi|68635329|emb|CAF21740.1| recombinase A [Lactobacillus acetotolerans]
          Length = 197

 Score =  280 bits (715), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 129/196 (65%), Positives = 166/196 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  V SGSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   ISTVPSGSLALDAALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQKHGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGAVDI+V+DSVAAL P+AEI+
Sbjct: 62  NAMDPAYAEALGVDVDSLILSQPNTGEEGLQIADTLISSGAVDIVVVDSVAALVPQAEID 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GEMGDTHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIK 240
           FYS++RL+IRR   IK
Sbjct: 182 FYSTIRLEIRRAEKIK 197


>gi|329770646|emb|CBX32266.1| recombinase A [Bradyrhizobium sp. BR 6009]
 gi|329770650|emb|CBX32268.1| recombinase A [Bradyrhizobium sp. BR 3790]
 gi|329770652|emb|CBX32269.1| recombinase A [Bradyrhizobium sp. BR 3793]
 gi|329770670|emb|CBX32278.1| recombinase A [Bradyrhizobium sp. BR 10105]
 gi|329770672|emb|CBX32279.1| recombinase A [Bradyrhizobium sp. BR 3751]
 gi|329770674|emb|CBX32280.1| recombinase A [Bradyrhizobium sp. BR 3753]
 gi|329770676|emb|CBX32281.1| recombinase A [Bradyrhizobium sp. BR 3755]
 gi|329770678|emb|CBX32282.1| recombinase A [Bradyrhizobium sp. BR 3759]
 gi|329770680|emb|CBX32283.1| recombinase A [Bradyrhizobium sp. BR 3760]
 gi|329770682|emb|CBX32284.1| recombinase A [Bradyrhizobium sp. BR 3761]
 gi|329770684|emb|CBX32285.1| recombinase A [Bradyrhizobium sp. BR 3763]
 gi|329770686|emb|CBX32286.1| recombinase A [Bradyrhizobium sp. BR 3767]
 gi|329770688|emb|CBX32287.1| recombinase A [Bradyrhizobium sp. BR 3768]
 gi|329770690|emb|CBX32288.1| recombinase A [Bradyrhizobium sp. BR 3771]
 gi|329770692|emb|CBX32289.1| recombinase A [Bradyrhizobium sp. BR 3772]
 gi|329770694|emb|CBX32290.1| recombinase A [Bradyrhizobium sp. BR 3778]
 gi|329770696|emb|CBX32291.1| recombinase A [Bradyrhizobium sp. BR 3779]
 gi|329770698|emb|CBX32292.1| recombinase A [Bradyrhizobium sp. BR 3782]
 gi|329770700|emb|CBX32293.1| recombinase A [Bradyrhizobium sp. BR 3787]
 gi|329770702|emb|CBX32294.1| recombinase A [Bradyrhizobium sp. BR 3799]
 gi|329770704|emb|CBX32295.1| recombinase A [Bradyrhizobium sp. BR 3800]
 gi|329770714|emb|CBX32300.1| recombinase A [Bradyrhizobium sp. BR 3669]
 gi|329770716|emb|CBX32301.1| recombinase A [Bradyrhizobium sp. BR 3670]
 gi|329770718|emb|CBX32302.1| recombinase A [Bradyrhizobium sp. BR 3683]
 gi|329770720|emb|CBX32303.1| recombinase A [Bradyrhizobium sp. BR 3687]
 gi|329770722|emb|CBX32304.1| recombinase A [Bradyrhizobium sp. BR 3684]
 gi|329770724|emb|CBX32305.1| recombinase A [Bradyrhizobium sp. BR 3653]
 gi|329770726|emb|CBX32306.1| recombinase A [Bradyrhizobium sp. BR 3654]
 gi|329770728|emb|CBX32307.1| recombinase A [Bradyrhizobium sp. BR 3655]
 gi|329770730|emb|CBX32308.1| recombinase A [Bradyrhizobium sp. BR 3685]
 gi|329770732|emb|CBX32309.1| recombinase A [Bradyrhizobium sp. BR 3686]
 gi|329770734|emb|CBX32310.1| recombinase A [Bradyrhizobium sp. BR 3698]
 gi|329770740|emb|CBX32313.1| recombinase A [Bradyrhizobium sp. BR 3709]
 gi|329770742|emb|CBX32314.1| recombinase A [Bradyrhizobium sp. BR 3710]
 gi|329770746|emb|CBX32316.1| recombinase A [Bradyrhizobium sp. BR 3648]
 gi|329770748|emb|CBX32317.1| recombinase A [Bradyrhizobium sp. BR 3644]
 gi|329770750|emb|CBX32318.1| recombinase A [Bradyrhizobium sp. BR 3645]
 gi|329770752|emb|CBX32319.1| recombinase A [Bradyrhizobium sp. BR 3642]
 gi|329770754|emb|CBX32320.1| recombinase A [Bradyrhizobium sp. BR 3643]
 gi|329770756|emb|CBX32321.1| recombinase A [Bradyrhizobium sp. BR 3740]
 gi|329770758|emb|CBX32322.1| recombinase A [Bradyrhizobium sp. BR 3640]
 gi|329770760|emb|CBX32323.1| recombinase A [Bradyrhizobium sp. BR 3641]
 gi|329770762|emb|CBX32324.1| recombinase A [Bradyrhizobium sp. BR 3646]
 gi|329770764|emb|CBX32325.1| recombinase A [Bradyrhizobium sp. BR 3649]
 gi|329770766|emb|CBX32326.1| recombinase A [Bradyrhizobium sp. BR 3658]
 gi|329770768|emb|CBX32327.1| recombinase A [Bradyrhizobium sp. BR 3659]
 gi|329770770|emb|CBX32328.1| recombinase A [Bradyrhizobium sp. BR 3664]
 gi|329770772|emb|CBX32329.1| recombinase A [Bradyrhizobium sp. BR 3682]
 gi|329770778|emb|CBX32332.1| recombinase A [Bradyrhizobium sp. BR 3672]
 gi|329770780|emb|CBX32333.1| recombinase A [Bradyrhizobium sp. BR 3656]
          Length = 180

 Score =  280 bits (715), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 134/179 (74%), Positives = 159/179 (88%), Gaps = 1/179 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG      + +E VSSGSLGLDIALG+GG PKGRI
Sbjct: 3   MDKSKALSAALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           GEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+
Sbjct: 122 GEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTA 180


>gi|110002993|emb|CAJ57783.1| recombinase A [Sinorhizobium saheli]
          Length = 166

 Score =  280 bits (715), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 136/167 (81%), Positives = 155/167 (92%), Gaps = 1/167 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARL
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARL 166


>gi|158198587|gb|ABW23447.1| RecA [Bradyrhizobium japonicum]
          Length = 169

 Score =  280 bits (715), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 129/166 (77%), Positives = 154/166 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 4   VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 64  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIGVM
Sbjct: 124 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVM 169


>gi|23194273|gb|AAN15084.1| RecA protein [Vibrio cholerae]
          Length = 190

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 127/186 (68%), Positives = 160/186 (86%)

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D 
Sbjct: 1   KTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDA 60

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           L RSGAVD+IV+DSVAALTP A  EG+MG+S  G+ AR++SQA+RKLT ++ +S C+ +F
Sbjct: 61  LARSGAVDVIVVDSVAALTPSAXXEGEMGDSHMGLLARMLSQAMRKLTGNLKQSNCMCIF 120

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           INQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+
Sbjct: 121 INQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKI 180

Query: 260 ASPFKQ 265
           A+PFK+
Sbjct: 181 AAPFKE 186


>gi|110003007|emb|CAJ57790.1| recombinase A [Sinorhizobium fredii]
          Length = 166

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 138/167 (82%), Positives = 154/167 (92%), Gaps = 1/167 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARL
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARL 166


>gi|5002563|emb|CAB44333.1| RecA protein [Frankia alni]
          Length = 186

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 134/185 (72%), Positives = 159/185 (85%)

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           +SSGKTT+ALHT+A +Q  GG  AF+DAEHALD  YA KLGVD+ NLL+SQPDTGEQALE
Sbjct: 1   DSSGKTTVALHTVANAQAAGGITAFIDAEHALDPEYAGKLGVDIDNLLVSQPDTGEQALE 60

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T++++ S  
Sbjct: 61  IADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTAALANSGT 120

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
             +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+TRVKVV
Sbjct: 121 TAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTEAVGNRTRVKVV 180

Query: 256 KNKMA 260
           KNK+A
Sbjct: 181 KNKVA 185


>gi|158198585|gb|ABW23446.1| RecA [Bradyrhizobium japonicum]
          Length = 168

 Score =  279 bits (714), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 129/166 (77%), Positives = 154/166 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 3   VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 63  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIGVM
Sbjct: 123 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVM 168


>gi|285920732|gb|ADC39699.1| recombinase A [Campylobacter coli]
 gi|285920746|gb|ADC39706.1| recombinase A [Campylobacter coli]
 gi|285920748|gb|ADC39707.1| recombinase A [Campylobacter coli]
 gi|285920752|gb|ADC39709.1| recombinase A [Campylobacter coli]
 gi|285920754|gb|ADC39710.1| recombinase A [Campylobacter coli]
 gi|285920756|gb|ADC39711.1| recombinase A [Campylobacter coli]
 gi|285920760|gb|ADC39713.1| recombinase A [Campylobacter coli]
 gi|285920762|gb|ADC39714.1| recombinase A [Campylobacter coli]
 gi|285920764|gb|ADC39715.1| recombinase A [Campylobacter coli]
 gi|285920766|gb|ADC39716.1| recombinase A [Campylobacter coli]
          Length = 205

 Score =  279 bits (714), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 131/194 (67%), Positives = 160/194 (82%), Gaps = 1/194 (0%)

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
           +ALGIGG PKGRI+EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD  YA+ LG
Sbjct: 1   LALGIGGIPKGRIIEIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLG 60

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           V+  +L +SQPD GEQALEI + + RSGAVD+IV+DSVAALTP+AEIEGDMG+   G+QA
Sbjct: 61  VNTDDLYVSQPDFGEQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGDQHVGLQA 120

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRR 235
           RLMSQALRKLT  + +    ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R+
Sbjct: 121 RLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRK 180

Query: 236 VGSIKDKDSITGNQ 249
           V ++K  +   GN+
Sbjct: 181 VATLKQNEEPIGNR 194


>gi|68637358|emb|CAF21804.1| recombinase A [Lactobacillus vaginalis]
          Length = 200

 Score =  279 bits (714), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 130/197 (65%), Positives = 167/197 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  VSSGSL +D ALG+GG+P+GRIVEIYGPESSGKTT+AL  +A+ Q+ GGT A++DAE
Sbjct: 2   IATVSSGSLAIDKALGVGGYPRGRIVEIYGPESSGKTTVALQAVAEVQRQGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD  YA  LGV++ +LL+SQPDTGE+ LEI D L+ SGAVD++V+DSVAAL PRAEIE
Sbjct: 62  NALDPQYAEALGVNVDDLLLSQPDTGEEGLEIADALISSGAVDLVVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+  I+++K I +FINQ+R K+GVMFG+PETTTGG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTTGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FYS++R++IRR   IK+
Sbjct: 182 FYSTIRMEIRRSEQIKN 198


>gi|158632176|gb|ABW75484.1| RecA [Rhizobium multihospitium]
          Length = 162

 Score =  279 bits (714), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 132/161 (81%), Positives = 151/161 (93%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSL LDIALGIGG PKGRI+EIY  ESSGKTTLAL TIA++QK GG CAFVDAEHAL
Sbjct: 2   VSTGSLSLDIALGIGGLPKGRIIEIYRTESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+M
Sbjct: 62  DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 121

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIG
Sbjct: 122 GDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 162


>gi|307343386|emb|CBJ18134.1| recombinase A [Micromonospora sp. GUI27]
          Length = 182

 Score =  279 bits (714), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 130/181 (71%), Positives = 155/181 (85%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD 
Sbjct: 2   TGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVASAQRAGGIAAFIDAEHALDP 61

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
            YA+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+
Sbjct: 62  DYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGEMGD 121

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           S  G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SV
Sbjct: 122 SHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASV 181

Query: 230 R 230
           R
Sbjct: 182 R 182


>gi|193090237|gb|ACF15290.1| recombination protein A [Rhizobium huautlense]
          Length = 166

 Score =  279 bits (714), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 136/167 (81%), Positives = 154/167 (92%), Gaps = 1/167 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LGS  +I E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA+
Sbjct: 1   SVMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V
Sbjct: 60  AQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           +DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS C++
Sbjct: 120 VDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCMV 166


>gi|262064654|gb|ACY07561.1| recombinase A [Rhizobium sp. RPVN06]
          Length = 170

 Score =  279 bits (714), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 135/171 (78%), Positives = 157/171 (91%), Gaps = 1/171 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTT
Sbjct: 1   IERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVR
Sbjct: 60  LALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SI  S
Sbjct: 120 SGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIRMS 170


>gi|194476421|gb|ACF74775.1| RecA [Rhizobium multihospitium]
          Length = 168

 Score =  279 bits (714), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 132/164 (80%), Positives = 150/164 (91%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE      L LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 2   IERFPPAPLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIE
Sbjct: 62  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIG
Sbjct: 122 GEMGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 165


>gi|195928116|gb|ACG55714.1| recombination protein A [Bradyrhizobium sp. ORS339]
 gi|195928144|gb|ACG55728.1| recombination protein A [Bradyrhizobium sp. ORS389]
 gi|195928270|gb|ACG55791.1| recombination protein A [Bradyrhizobium sp. STM 4522]
          Length = 181

 Score =  279 bits (714), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 134/181 (74%), Positives = 161/181 (88%), Gaps = 1/181 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG      + +E VS+GSLGLDIALGIGG PKGRIVEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSMD-VETVSTGSLGLDIALGIGGLPKGRIVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A++QK GG CAF+DAEHALD IYARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEAQKKGGICAFIDAEHALDPIYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 121 DTLVRSGAVDVMVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 180

Query: 198 V 198
           +
Sbjct: 181 I 181


>gi|213950728|gb|ACJ54609.1| recombination protein A [Rhizobium sp. CCBAU 41184]
          Length = 173

 Score =  279 bits (714), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 137/166 (82%), Positives = 154/166 (92%), Gaps = 1/166 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LGS  SI E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TI
Sbjct: 3   KGSIMKLGSNESIVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 61

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 62  AEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDV 121

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           +V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+SK
Sbjct: 122 LVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSK 167


>gi|195928102|gb|ACG55707.1| recombination protein A [Bradyrhizobium sp. ORS303]
          Length = 181

 Score =  279 bits (714), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 133/181 (73%), Positives = 161/181 (88%), Gaps = 1/181 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG      + +E VS+GSLGLDIALGIGG PKGRIVEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSMD-VETVSTGSLGLDIALGIGGLPKGRIVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIXELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 180

Query: 198 V 198
           +
Sbjct: 181 I 181


>gi|29652162|gb|AAO87742.1| RecA [Listeria monocytogenes]
          Length = 198

 Score =  279 bits (714), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 133/199 (66%), Positives = 166/199 (83%), Gaps = 2/199 (1%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKT
Sbjct: 2   QIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LV
Sbjct: 60  TVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FIN
Sbjct: 120 RSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGG 220
           Q+R K+GVMFG+PE T GG
Sbjct: 180 QIREKVGVMFGNPEITPGG 198


>gi|158631772|gb|ABW74991.1| RecA [Mesorhizobium gobiense]
          Length = 160

 Score =  279 bits (714), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 130/159 (81%), Positives = 150/159 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHAL
Sbjct: 1   VPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+M
Sbjct: 61  DPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G+SLPG+QARLMSQALRKLT+SISRS  +++FINQ+RMK
Sbjct: 121 GDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMK 159


>gi|329770708|emb|CBX32297.1| recombinase A [Bradyrhizobium sp. BR 10116]
 gi|329770710|emb|CBX32298.1| recombinase A [Bradyrhizobium sp. BR 3757]
 gi|329770712|emb|CBX32299.1| recombinase A [Bradyrhizobium sp. BR 3769]
 gi|329770738|emb|CBX32312.1| recombinase A [Bradyrhizobium sp. BR 3688]
 gi|329770744|emb|CBX32315.1| recombinase A [Bradyrhizobium sp. BR 3652]
 gi|329770774|emb|CBX32330.1| recombinase A [Bradyrhizobium sp. BR 3647]
 gi|329770776|emb|CBX32331.1| recombinase A [Bradyrhizobium sp. BR 3657]
 gi|329770782|emb|CBX32334.1| recombinase A [Bradyrhizobium sp. BR 3679]
 gi|329770784|emb|CBX32335.1| recombinase A [Bradyrhizobium sp. BR 3680]
 gi|329770786|emb|CBX32336.1| recombinase A [Bradyrhizobium sp. BR 3726]
 gi|329770788|emb|CBX32337.1| recombinase A [Bradyrhizobium sp. BR 3676]
 gi|329770790|emb|CBX32338.1| recombinase A [Bradyrhizobium sp. BR 3677]
 gi|329770792|emb|CBX32339.1| recombinase A [Bradyrhizobium sp. BR 3678]
 gi|329770794|emb|CBX32340.1| recombinase A [Bradyrhizobium sp. BR 3681]
 gi|329770796|emb|CBX32341.1| recombinase A [Bradyrhizobium sp. BR 3691]
 gi|329770798|emb|CBX32342.1| recombinase A [Bradyrhizobium sp. BR 3713]
 gi|329770800|emb|CBX32343.1| recombinase A [Bradyrhizobium sp. BR 3714]
 gi|329770802|emb|CBX32344.1| recombinase A [Bradyrhizobium sp. BR 3706]
          Length = 180

 Score =  279 bits (714), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 133/179 (74%), Positives = 159/179 (88%), Gaps = 1/179 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG      + +E VSSGSLGLDIALG+GG PKGR+
Sbjct: 3   MDKSKALSAALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRV 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           GEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+
Sbjct: 122 GEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTA 180


>gi|289812950|gb|ADD20935.1| recombinase A [Bradyrhizobium liaoningense]
          Length = 165

 Score =  279 bits (714), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 131/165 (79%), Positives = 153/165 (92%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEH
Sbjct: 1   EAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG
Sbjct: 61  ALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIGVM
Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVM 165


>gi|268308917|gb|ACY95419.1| recombination protein A [Rhizobium sp. CCBAU 05176]
 gi|268308919|gb|ACY95420.1| recombination protein A [Rhizobium sp. CCBAU 45071]
 gi|268308925|gb|ACY95423.1| recombination protein A [Rhizobium sp. CCBAU 45248]
 gi|297528275|gb|ADI46173.1| recombination protein A [Rhizobium sp. CCBAU 05104]
          Length = 159

 Score =  279 bits (714), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 133/159 (83%), Positives = 150/159 (94%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD 
Sbjct: 1   TGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+
Sbjct: 61  VYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIG
Sbjct: 121 SLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIG 159


>gi|307343434|emb|CBJ18158.1| recombinase A [Micromonospora sp. SGA18]
          Length = 180

 Score =  279 bits (713), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 132/180 (73%), Positives = 154/180 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHALD  Y
Sbjct: 1   SIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   LL+SQPDTGEQALEITDMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDALLVSQPDTGEQALEITDMLVRSGAIDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
            G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALK Y+SVRL
Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYASVRL 180


>gi|29652276|gb|AAO87799.1| RecA [Listeria monocytogenes]
          Length = 200

 Score =  279 bits (713), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 133/199 (66%), Positives = 166/199 (83%), Gaps = 2/199 (1%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESS
Sbjct: 3   ALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESS 60

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI +
Sbjct: 61  GKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAE 120

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +
Sbjct: 121 ALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAI 180

Query: 199 FINQMRMKIGVMFGSPETT 217
           FINQ+R K+GVMFG+PE T
Sbjct: 181 FINQIREKVGVMFGNPEIT 199


>gi|199595024|gb|ACH90976.1| RecA [Stenotrophomonas maltophilia]
 gi|301318426|gb|ADK67128.1| RecA protein [Stenotrophomonas maltophilia]
          Length = 182

 Score =  279 bits (713), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 136/182 (74%), Positives = 157/182 (86%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +E + +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKLGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+V+DSVAALTP+AE
Sbjct: 61  AEHALDPIYAGKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVVDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS  ++VFINQ+RMKIGVM    SPE TTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPEVTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|29652158|gb|AAO87740.1| RecA [Listeria monocytogenes]
          Length = 199

 Score =  279 bits (713), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 133/199 (66%), Positives = 166/199 (83%), Gaps = 2/199 (1%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESS
Sbjct: 3   ALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESS 60

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI +
Sbjct: 61  GKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAE 120

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +
Sbjct: 121 ALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAI 180

Query: 199 FINQMRMKIGVMFGSPETT 217
           FINQ+R K+GVMFG+PE T
Sbjct: 181 FINQIREKVGVMFGNPEIT 199


>gi|29652011|gb|AAO87668.1| RecA [Listeria monocytogenes]
          Length = 199

 Score =  279 bits (713), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 133/199 (66%), Positives = 166/199 (83%), Gaps = 2/199 (1%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKT
Sbjct: 2   QIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LV
Sbjct: 60  TVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FIN
Sbjct: 120 RSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGG 220
           Q+R K+GVMFG+PE T GG
Sbjct: 180 QIREKVGVMFGNPEITPGG 198


>gi|89145050|emb|CAJ57533.1| recombinase A [Microbacterium terregens]
          Length = 198

 Score =  279 bits (713), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 139/198 (70%), Positives = 163/198 (82%)

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AF+DAEHALD  YA KLGVD+  LL+SQPDTGEQALEI DML+RSG++D+IVIDSVAAL 
Sbjct: 1   AFIDAEHALDPDYAAKLGVDIDQLLVSQPDTGEQALEIADMLIRSGSIDLIVIDSVAALV 60

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           P+AEIEG+MG+S  G+QARLMSQALRKLT  ++ +   ++FINQ+R KIGV FGSPETT 
Sbjct: 61  PKAEIEGEMGDSHVGLQARLMSQALRKLTGGLNTTNTTMIFINQLREKIGVFFGSPETTA 120

Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISF 278
           GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA PFKQ EFDI+YG GIS 
Sbjct: 121 GGKALKFYASVRLDIRRIETMKDGTDAIGNRTRVKVVKNKMAPPFKQAEFDILYGTGISR 180

Query: 279 FGELIDLGVKASIVDKSG 296
            G LID GV+  IV KSG
Sbjct: 181 EGSLIDFGVEHEIVKKSG 198


>gi|289812940|gb|ADD20930.1| recombinase A [Bradyrhizobium yuanmingense]
 gi|325512833|gb|ADZ23605.1| RecA [Bradyrhizobium sp. CCBAU 03335]
          Length = 165

 Score =  279 bits (713), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 130/165 (78%), Positives = 153/165 (92%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEH
Sbjct: 1   EAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG
Sbjct: 61  ALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIGVM
Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVM 165


>gi|225008778|gb|ACN78937.1| RecA [Rhizobium sp. NTP02]
          Length = 168

 Score =  279 bits (713), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 134/167 (80%), Positives = 155/167 (92%), Gaps = 1/167 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL 
Sbjct: 2   FGKGPIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQ 60

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAV
Sbjct: 61  TIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAV 120

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 121 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 167


>gi|68637232|emb|CAF21774.1| recombinase A [Lactobacillus kefiranofaciens subsp. kefirgranum]
          Length = 200

 Score =  279 bits (713), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 125/198 (63%), Positives = 167/198 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  V +GSL LD A+G+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   ISTVPTGSLALDAAIGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGAVDI+V+DSVAAL PRAEIE
Sbjct: 62  NAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAVDIVVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKDK 242
           FYS++RL++RR   I ++
Sbjct: 182 FYSTIRLEVRRAEQINNQ 199


>gi|110002985|emb|CAJ57779.1| recombinase A [Sinorhizobium medicae]
          Length = 166

 Score =  279 bits (713), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 137/167 (82%), Positives = 154/167 (92%), Gaps = 1/167 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERAFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARL
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARL 166


>gi|195928088|gb|ACG55700.1| recombination protein A [Bradyrhizobium sp. ORS280]
 gi|195928090|gb|ACG55701.1| recombination protein A [Bradyrhizobium sp. ORS285]
 gi|195928092|gb|ACG55702.1| recombination protein A [Bradyrhizobium sp. ORS292]
 gi|195928096|gb|ACG55704.1| recombination protein A [Bradyrhizobium sp. ORS295]
 gi|195928098|gb|ACG55705.1| recombination protein A [Bradyrhizobium sp. ORS297]
 gi|195928108|gb|ACG55710.1| recombination protein A [Bradyrhizobium sp. ORS311]
 gi|195928112|gb|ACG55712.1| recombination protein A [Bradyrhizobium sp. ORS324]
 gi|195928118|gb|ACG55715.1| recombination protein A [Bradyrhizobium sp. ORS340]
 gi|195928120|gb|ACG55716.1| recombination protein A [Bradyrhizobium sp. ORS341]
 gi|195928122|gb|ACG55717.1| recombination protein A [Bradyrhizobium sp. ORS342]
 gi|195928126|gb|ACG55719.1| recombination protein A [Bradyrhizobium sp. ORS346]
 gi|195928130|gb|ACG55721.1| recombination protein A [Bradyrhizobium sp. ORS356]
 gi|195928132|gb|ACG55722.1| recombination protein A [Bradyrhizobium sp. ORS359]
 gi|195928134|gb|ACG55723.1| recombination protein A [Bradyrhizobium sp. ORS361]
 gi|195928136|gb|ACG55724.1| recombination protein A [Bradyrhizobium sp. ORS380]
 gi|195928138|gb|ACG55725.1| recombination protein A [Bradyrhizobium sp. ORS383]
 gi|195928140|gb|ACG55726.1| recombination protein A [Bradyrhizobium sp. ORS384]
 gi|195928142|gb|ACG55727.1| recombination protein A [Bradyrhizobium sp. ORS386]
 gi|195928146|gb|ACG55729.1| recombination protein A [Bradyrhizobium sp. ORS394]
 gi|195928148|gb|ACG55730.1| recombination protein A [Bradyrhizobium sp. ORS396]
 gi|195928150|gb|ACG55731.1| recombination protein A [Bradyrhizobium sp. ORS397]
 gi|195928152|gb|ACG55732.1| recombination protein A [Bradyrhizobium sp. ORS402]
 gi|195928154|gb|ACG55733.1| recombination protein A [Bradyrhizobium sp. ORS408]
 gi|195928156|gb|ACG55734.1| recombination protein A [Bradyrhizobium sp. ORS2005]
 gi|195928158|gb|ACG55735.1| recombination protein A [Bradyrhizobium sp. ORS2006]
 gi|195928160|gb|ACG55736.1| recombination protein A [Bradyrhizobium sp. ORS2008]
 gi|195928162|gb|ACG55737.1| recombination protein A [Bradyrhizobium sp. ORS2009]
 gi|195928164|gb|ACG55738.1| recombination protein A [Bradyrhizobium sp. ORS2011]
 gi|195928166|gb|ACG55739.1| recombination protein A [Bradyrhizobium sp. ORS2014]
 gi|195928178|gb|ACG55745.1| recombination protein A [Bradyrhizobium sp. STM 3796]
 gi|195928182|gb|ACG55747.1| recombination protein A [Bradyrhizobium sp. STM 3810]
 gi|195928190|gb|ACG55751.1| recombination protein A [Bradyrhizobium sp. STM 3832]
 gi|195928192|gb|ACG55752.1| recombination protein A [Bradyrhizobium sp. STM 3833]
 gi|195928208|gb|ACG55760.1| recombination protein A [Bradyrhizobium sp. STM 3847]
 gi|195928214|gb|ACG55763.1| recombination protein A [Bradyrhizobium sp. STM 3953]
 gi|195928228|gb|ACG55770.1| recombination protein A [Bradyrhizobium sp. STM 3967]
 gi|195928230|gb|ACG55771.1| recombination protein A [Bradyrhizobium sp. STM 4497]
 gi|195928232|gb|ACG55772.1| recombination protein A [Bradyrhizobium sp. STM 4498]
 gi|195928234|gb|ACG55773.1| recombination protein A [Bradyrhizobium sp. STM 4499]
 gi|195928236|gb|ACG55774.1| recombination protein A [Bradyrhizobium sp. STM 4500]
 gi|195928238|gb|ACG55775.1| recombination protein A [Bradyrhizobium sp. STM 4501]
 gi|195928240|gb|ACG55776.1| recombination protein A [Bradyrhizobium sp. STM 4502]
 gi|195928242|gb|ACG55777.1| recombination protein A [Bradyrhizobium sp. STM 4503]
 gi|195928244|gb|ACG55778.1| recombination protein A [Bradyrhizobium sp. STM 4504]
 gi|195928246|gb|ACG55779.1| recombination protein A [Bradyrhizobium sp. STM 4505]
 gi|195928248|gb|ACG55780.1| recombination protein A [Bradyrhizobium sp. STM 4506]
 gi|195928250|gb|ACG55781.1| recombination protein A [Bradyrhizobium sp. STM 4508]
 gi|195928252|gb|ACG55782.1| recombination protein A [Bradyrhizobium sp. STM 4509]
 gi|195928254|gb|ACG55783.1| recombination protein A [Bradyrhizobium sp. STM 4510]
 gi|195928256|gb|ACG55784.1| recombination protein A [Bradyrhizobium sp. STM 4511]
 gi|195928258|gb|ACG55785.1| recombination protein A [Bradyrhizobium sp. STM 4512]
 gi|195928260|gb|ACG55786.1| recombination protein A [Bradyrhizobium sp. STM 4513]
 gi|195928262|gb|ACG55787.1| recombination protein A [Bradyrhizobium sp. STM 4514]
 gi|195928264|gb|ACG55788.1| recombination protein A [Bradyrhizobium sp. STM 4515]
 gi|195928266|gb|ACG55789.1| recombination protein A [Bradyrhizobium sp. STM 4516]
 gi|195928268|gb|ACG55790.1| recombination protein A [Bradyrhizobium sp. STM 4521]
 gi|195928274|gb|ACG55793.1| recombination protein A [Bradyrhizobium sp. STM 4524]
 gi|195928276|gb|ACG55794.1| recombination protein A [Bradyrhizobium sp. STM 4525]
 gi|195928278|gb|ACG55795.1| recombination protein A [Bradyrhizobium sp. STM 4543]
 gi|195928280|gb|ACG55796.1| recombination protein A [Bradyrhizobium sp. STM 4544]
 gi|195928284|gb|ACG55798.1| recombination protein A [Bradyrhizobium sp. ORS320]
          Length = 181

 Score =  279 bits (713), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 133/181 (73%), Positives = 161/181 (88%), Gaps = 1/181 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG      + +E VS+GSLGLDIALGIGG PKGRIVEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSMD-VETVSTGSLGLDIALGIGGLPKGRIVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 180

Query: 198 V 198
           +
Sbjct: 181 I 181


>gi|325512765|gb|ADZ23571.1| RecA [Rhizobium sp. CCBAU 45499]
          Length = 159

 Score =  279 bits (713), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 132/159 (83%), Positives = 150/159 (94%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD
Sbjct: 1   STGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG
Sbjct: 61  PVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKI
Sbjct: 121 DSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKI 159


>gi|195928094|gb|ACG55703.1| recombination protein A [Bradyrhizobium sp. ORS293]
 gi|195928110|gb|ACG55711.1| recombination protein A [Bradyrhizobium sp. ORS321]
 gi|195928168|gb|ACG55740.1| recombination protein A [Bradyrhizobium sp. STM 3737]
 gi|195928170|gb|ACG55741.1| recombination protein A [Bradyrhizobium sp. STM 3739]
 gi|195928172|gb|ACG55742.1| recombination protein A [Bradyrhizobium sp. STM 3743]
 gi|195928174|gb|ACG55743.1| recombination protein A [Bradyrhizobium sp. STM 3792]
 gi|195928176|gb|ACG55744.1| recombination protein A [Bradyrhizobium sp. STM 3795]
 gi|195928180|gb|ACG55746.1| recombination protein A [Bradyrhizobium sp. STM 3809]
 gi|195928184|gb|ACG55748.1| recombination protein A [Bradyrhizobium sp. STM 3816]
 gi|195928186|gb|ACG55749.1| recombination protein A [Bradyrhizobium sp. STM 3825]
 gi|195928188|gb|ACG55750.1| recombination protein A [Bradyrhizobium sp. STM 3830]
 gi|195928194|gb|ACG55753.1| recombination protein A [Bradyrhizobium sp. STM 3835]
 gi|195928196|gb|ACG55754.1| recombination protein A [Bradyrhizobium sp. STM 3836]
 gi|195928198|gb|ACG55755.1| recombination protein A [Bradyrhizobium sp. STM 3839]
 gi|195928200|gb|ACG55756.1| recombination protein A [Bradyrhizobium sp. STM 3840]
 gi|195928210|gb|ACG55761.1| recombination protein A [Bradyrhizobium sp. STM 3849]
 gi|195928212|gb|ACG55762.1| recombination protein A [Bradyrhizobium sp. STM 3850]
 gi|195928216|gb|ACG55764.1| recombination protein A [Bradyrhizobium sp. STM 3954]
 gi|195928220|gb|ACG55766.1| recombination protein A [Bradyrhizobium sp. STM 3957]
 gi|195928222|gb|ACG55767.1| recombination protein A [Bradyrhizobium sp. STM 3959]
 gi|195928226|gb|ACG55769.1| recombination protein A [Bradyrhizobium sp. STM 3966]
 gi|195928272|gb|ACG55792.1| recombination protein A [Bradyrhizobium sp. STM 4523]
          Length = 181

 Score =  279 bits (713), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 133/181 (73%), Positives = 161/181 (88%), Gaps = 1/181 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG      + +E VS+GSLGLDIALGIGG PKGRIVEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSMD-VETVSTGSLGLDIALGIGGLPKGRIVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 121 DTLVRSGAVDVMVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 180

Query: 198 V 198
           +
Sbjct: 181 I 181


>gi|68637270|emb|CAF21782.1| recombinase A [Lactobacillus mucosae]
          Length = 200

 Score =  279 bits (713), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 129/197 (65%), Positives = 168/197 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  VSSGSL +D ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   IATVSSGSLAIDEALGVGGYPRGRIIEMYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD  YA+ LGV++K+LL+SQPDTGE+ LEI D L+ SGAVDI+++DSVAAL PRAEIE
Sbjct: 62  NALDPQYAQALGVNVKDLLLSQPDTGEEGLEIADALIASGAVDIVIVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+  I+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GEMGDTHVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FYS++R++I R   +KD
Sbjct: 182 FYSTIRMEIVRGEQLKD 198


>gi|110002967|emb|CAJ57770.1| recombinase A [Rhizobium galegae]
          Length = 166

 Score =  279 bits (713), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 139/167 (83%), Positives = 154/167 (92%), Gaps = 1/167 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  +I E IE VS+GSL LDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           QALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLPG+QARL
Sbjct: 120 QALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQARL 166


>gi|297528277|gb|ADI46174.1| recombination protein A [Rhizobium sp. CCBAU 05161]
          Length = 158

 Score =  279 bits (713), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 133/158 (84%), Positives = 149/158 (94%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           L LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YA
Sbjct: 1   LSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           RKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLP
Sbjct: 61  RKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLP 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIGVM
Sbjct: 121 GLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 158


>gi|290889053|gb|ADD69876.1| recombination protein A [Sinorhizobium fredii]
 gi|290889067|gb|ADD69883.1| recombination protein A [Sinorhizobium fredii]
 gi|290889069|gb|ADD69884.1| recombination protein A [Sinorhizobium fredii]
 gi|290889071|gb|ADD69885.1| recombination protein A [Sinorhizobium fredii]
 gi|290889073|gb|ADD69886.1| recombination protein A [Sinorhizobium fredii]
 gi|290889093|gb|ADD69896.1| recombination protein A [Sinorhizobium fredii]
          Length = 157

 Score =  279 bits (713), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 132/157 (84%), Positives = 148/157 (94%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD
Sbjct: 1   STGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG
Sbjct: 61  PIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RM
Sbjct: 121 DSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRM 157


>gi|68637193|emb|CAF21767.1| recombinase A [Lactobacillus gallinarum]
          Length = 200

 Score =  279 bits (713), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 125/196 (63%), Positives = 166/196 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  V +GSL LD A+G+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   ISTVPTGSLALDAAIGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIE
Sbjct: 62  NAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIK 240
           FYS++RL++RR   IK
Sbjct: 182 FYSTIRLEVRRAEQIK 197


>gi|68637279|emb|CAF21784.1| recombinase A [Lactobacillus oris]
          Length = 200

 Score =  279 bits (713), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 129/197 (65%), Positives = 165/197 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  VSSGSL +D ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ Q+ GGT A++DAE
Sbjct: 2   IATVSSGSLAIDKALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQRQGGTVAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD  YA  LGVD+ NLL+SQPDTGE+ L I D L+ + A+D++VIDSVAAL P+AEI+
Sbjct: 62  NALDPQYAEALGVDVDNLLLSQPDTGEEGLAIADALIATSAIDLVVIDSVAALVPQAEID 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG+   G+QARLMSQALRKL+  I+++K I +FINQ+R K+GVMFG+PETTTGG ALK
Sbjct: 122 GDMGDHHVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTTGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FYS++R++IRR   IK+
Sbjct: 182 FYSTIRMEIRRAEQIKN 198


>gi|307343406|emb|CBJ18144.1| recombinase A [Micromonospora sp. CR18]
 gi|307343432|emb|CBJ18157.1| recombinase A [Micromonospora sp. SGA16]
          Length = 180

 Score =  279 bits (713), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 131/180 (72%), Positives = 154/180 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDALLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
            G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRL
Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRL 180


>gi|307343137|emb|CBJ18098.1| recombinase A [Micromonospora carbonacea]
 gi|307343340|emb|CBJ18111.1| recombinase A [Micromonospora halophytica]
          Length = 183

 Score =  279 bits (713), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 131/183 (71%), Positives = 155/183 (84%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDALLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALK Y+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYA 180

Query: 228 SVR 230
           SVR
Sbjct: 181 SVR 183


>gi|290889075|gb|ADD69887.1| recombination protein A [Rhizobium lusitanum]
          Length = 157

 Score =  278 bits (712), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 131/157 (83%), Positives = 149/157 (94%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD
Sbjct: 1   STGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIEG+MG
Sbjct: 61  PVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RM
Sbjct: 121 DSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRM 157


>gi|307343402|emb|CBJ18142.1| recombinase A [Micromonospora sp. GUI61]
          Length = 180

 Score =  278 bits (712), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 131/180 (72%), Positives = 155/180 (86%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH++A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHSVASAQRLGGIAAFIDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDAMLVSQPDTGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
            G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRL
Sbjct: 121 VGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRL 180


>gi|291246142|gb|ADD85195.1| RecA [Borrelia recurrentis]
          Length = 213

 Score =  278 bits (712), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 131/209 (62%), Positives = 178/209 (85%), Gaps = 1/209 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+++++G +  + + +E + SG + LD A+GIGG+P+GR+VEI+GPESSGKTTL L  
Sbjct: 1   GKGSLIKMG-ESPVGKYLESIPSGFILLDEAIGIGGYPRGRVVEIFGPESSGKTTLTLQA 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QKTGG  AF+DAEHALD +YAR LGV++  L +SQPDTGEQAL+I + L+RSG VD
Sbjct: 60  IAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQPDTGEQALDIAEYLIRSGGVD 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IV+DSVAAL P+AEI+G+MG++  G+QARLMS+ALRK+T+ +S+S   ++FINQ+RMKI
Sbjct: 120 LIVVDSVAALMPQAEIDGEMGDTQIGLQARLMSKALRKITAILSKSNACIMFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           G++FGSPETTTGGNALKFYSS+RL++R+V
Sbjct: 180 GLVFGSPETTTGGNALKFYSSLRLEVRKV 208


>gi|195928224|gb|ACG55768.1| recombination protein A [Bradyrhizobium sp. STM 3964]
          Length = 181

 Score =  278 bits (712), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 133/181 (73%), Positives = 161/181 (88%), Gaps = 1/181 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG      + IE VS+GSLGLDIALG+GG PKGRIVEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMRLGKNDRSMD-IETVSTGSLGLDIALGVGGLPKGRIVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 180

Query: 198 V 198
           +
Sbjct: 181 I 181


>gi|29652064|gb|AAO87694.1| RecA [Listeria monocytogenes]
 gi|29652120|gb|AAO87721.1| RecA [Listeria monocytogenes]
 gi|29652136|gb|AAO87729.1| RecA [Listeria monocytogenes]
 gi|29652174|gb|AAO87748.1| RecA [Listeria monocytogenes]
 gi|29652182|gb|AAO87752.1| RecA [Listeria monocytogenes]
 gi|29652192|gb|AAO87757.1| RecA [Listeria monocytogenes]
 gi|29652274|gb|AAO87798.1| RecA [Listeria monocytogenes]
 gi|29652284|gb|AAO87803.1| RecA [Listeria monocytogenes]
 gi|29652292|gb|AAO87807.1| RecA [Listeria monocytogenes]
          Length = 198

 Score =  278 bits (712), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 133/200 (66%), Positives = 166/200 (83%), Gaps = 2/200 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MRMKIGVMFGSPETTTGGNA 222
           +R K+GVMFG+PE T GG A
Sbjct: 179 IREKVGVMFGNPEITPGGRA 198


>gi|158147279|gb|ABW22693.1| recA [Sinorhizobium sp. CCBAU 83643]
          Length = 158

 Score =  278 bits (712), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 132/157 (84%), Positives = 148/157 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL
Sbjct: 2   VSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M
Sbjct: 62  DPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 121

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+R
Sbjct: 122 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIR 158


>gi|114150702|gb|ABI51997.1| recombinase A [Pseudomonas fluorescens]
          Length = 181

 Score =  278 bits (712), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 129/181 (71%), Positives = 158/181 (87%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           FVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IV+DSVAAL P
Sbjct: 1   FVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           +AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFGSPETTTG
Sbjct: 61  KAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTG 120

Query: 220 GNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFF 279
           GNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+YG+GI   
Sbjct: 121 GNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQILYGKGIYLN 180

Query: 280 G 280
           G
Sbjct: 181 G 181


>gi|68637172|emb|CAF21764.1| recombinase A [Lactobacillus fornicalis]
          Length = 200

 Score =  278 bits (712), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 125/196 (63%), Positives = 166/196 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  V +GSL LD A+G+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   ISTVPTGSLALDAAIGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIE
Sbjct: 62  NAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGNISKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIK 240
           FYS++RL++RR   IK
Sbjct: 182 FYSTIRLEVRRAEQIK 197


>gi|226973227|gb|ACO95152.1| recombinase A [Bradyrhizobium sp. RSA104]
          Length = 183

 Score =  278 bits (712), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 131/183 (71%), Positives = 162/183 (88%), Gaps = 1/183 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG      + IE +SSGSLGLDIALG+GG P+GR+VEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSMD-IETISSGSLGLDIALGVGGLPRGRVVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 180

Query: 198 VFI 200
           +FI
Sbjct: 181 IFI 183


>gi|115498189|gb|ABI98674.1| RecA [Bradyrhizobium sp. CCBAU 23174]
          Length = 183

 Score =  278 bits (712), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 131/184 (71%), Positives = 162/184 (88%), Gaps = 1/184 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG      + +E +SS SLGLDIALG+GG PKGR+VEIYGPESSGKTTLAL 
Sbjct: 1   FGKGSVMKLGKNDRSMD-VETISSRSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALD 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSHTMVIFINQIRMK 179

Query: 207 IGVM 210
           IGVM
Sbjct: 180 IGVM 183


>gi|307343422|emb|CBJ18152.1| recombinase A [Micromonospora sp. SG15]
          Length = 180

 Score =  278 bits (712), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 131/180 (72%), Positives = 154/180 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
            G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRL
Sbjct: 121 VGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRL 180


>gi|295984328|gb|ADG63632.1| RecA [Sinorhizobium sp. CCBAU 05638]
 gi|295984332|gb|ADG63634.1| RecA [Sinorhizobium sp. CCBAU 05684]
 gi|295984334|gb|ADG63635.1| RecA [Sinorhizobium sp. CCBAU 05646]
          Length = 157

 Score =  278 bits (711), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 131/156 (83%), Positives = 147/156 (94%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +
Sbjct: 1   GSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPV 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+S
Sbjct: 61  YARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDS 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           LPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 121 LPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 156


>gi|307343370|emb|CBJ18126.1| recombinase A [Micromonospora sp. GUI3]
          Length = 180

 Score =  278 bits (711), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 131/180 (72%), Positives = 154/180 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
            G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRL
Sbjct: 121 VGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRL 180


>gi|110002999|emb|CAJ57786.1| recombinase A [Sinorhizobium kostiense]
          Length = 166

 Score =  278 bits (711), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 136/167 (81%), Positives = 154/167 (92%), Gaps = 1/167 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERAFGKGSIMKLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG++LPGMQARL
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDNLPGMQARL 166


>gi|68637184|emb|CAF21765.1| recombinase A [Lactobacillus frumenti]
          Length = 200

 Score =  278 bits (711), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 129/197 (65%), Positives = 166/197 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  +SSGSL +D ALG+GG+P+GRIVEIYGPESSGKTT+AL  +A+ Q+ GGT A++DA+
Sbjct: 2   IATISSGSLAIDKALGVGGYPRGRIVEIYGPESSGKTTVALQAVAEVQRQGGTAAYIDAQ 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD  YA  LGV++ +LL+SQPDTGEQ LEI D L+ SGAVD++V+DSVAAL PRAEIE
Sbjct: 62  NALDPQYAETLGVNVDDLLLSQPDTGEQGLEIADALISSGAVDLVVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+   G+QARLMSQALRKL+  I+++K I +FINQ+R K+GVMFG+PETTTGG ALK
Sbjct: 122 GEMGDPHVGLQARLMSQALRKLSGEINKTKTIALFINQIREKVGVMFGNPETTTGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FYS++R++IRR   IK+
Sbjct: 182 FYSTIRMEIRRAEQIKN 198


>gi|29652210|gb|AAO87766.1| RecA [Listeria monocytogenes]
          Length = 197

 Score =  278 bits (711), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 132/198 (66%), Positives = 166/198 (83%), Gaps = 2/198 (1%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESS
Sbjct: 1   ALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESS 58

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI +
Sbjct: 59  GKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAE 118

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +
Sbjct: 119 ALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAI 178

Query: 199 FINQMRMKIGVMFGSPET 216
           FINQ+R K+GVMFG+PE+
Sbjct: 179 FINQIREKVGVMFGNPES 196


>gi|291172956|gb|ADD82745.1| recombinase A [Rhizobium sp. CCBAU 85050]
 gi|291172964|gb|ADD82749.1| recombinase A [Rhizobium sp. CCBAU 83011]
          Length = 158

 Score =  278 bits (711), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 130/158 (82%), Positives = 149/158 (94%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GSL LDIALGIGG PKGR++EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD 
Sbjct: 1   TGSLSLDIALGIGGLPKGRVIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAAL PRAEIEG+MG+
Sbjct: 61  VYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALVPRAEIEGEMGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKI
Sbjct: 121 SLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKI 158


>gi|213950736|gb|ACJ54613.1| recombination protein A [Ochrobactrum sp. CCBAU 61222]
          Length = 174

 Score =  278 bits (711), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 137/173 (79%), Positives = 156/173 (90%), Gaps = 2/173 (1%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG Q  + + IE V +GSL LDIALG+GG PKGRIVEIYGPESSGKTTLALH
Sbjct: 1   FGKGSIMRLG-QNEVVD-IETVPTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTLALH 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+
Sbjct: 59  TIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRSK    F
Sbjct: 119 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSKLHCHF 171


>gi|110002959|emb|CAJ57766.1| recombinase A [Rhizobium giardinii]
          Length = 166

 Score =  278 bits (711), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 138/167 (82%), Positives = 154/167 (92%), Gaps = 1/167 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGGKDSIVE-IETVSTGSLSLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           QALEITD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QARL
Sbjct: 120 QALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEMGDSLPGLQARL 166


>gi|68637208|emb|CAF21770.1| recombinase A [Lactobacillus helveticus]
          Length = 200

 Score =  278 bits (711), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 124/196 (63%), Positives = 166/196 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  V +GSL LD A+G+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   ISTVPTGSLALDAAIGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIE
Sbjct: 62  NAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ +IS++K I +FINQ+R K+G+MFG+PETT GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGIMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIK 240
           FYS++RL++RR   IK
Sbjct: 182 FYSTIRLEVRRAEQIK 197


>gi|307343360|emb|CBJ18121.1| recombinase A [Micromonospora sagamiensis]
          Length = 183

 Score =  278 bits (711), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 130/183 (71%), Positives = 155/183 (84%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDALLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALK Y+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYA 180

Query: 228 SVR 230
           SVR
Sbjct: 181 SVR 183


>gi|229458678|gb|ACQ65996.1| recombinase A [Bradyrhizobium sp. SEMIA 6434]
          Length = 175

 Score =  278 bits (711), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 135/175 (77%), Positives = 158/175 (90%), Gaps = 1/175 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKSDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ +LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDDLLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           D LVRSGAVD++VIDSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++
Sbjct: 121 DTLVRSGAVDVMVIDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINK 175


>gi|158147295|gb|ABW22701.1| recA [Rhizobium sp. CCBAU 83718]
          Length = 156

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 130/156 (83%), Positives = 148/156 (94%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +
Sbjct: 1   GSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPV 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+S
Sbjct: 61  YARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDS 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           LPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 121 LPGLQARLMSQALRKLTASISKSNCMVIFINQIRMK 156


>gi|307343358|emb|CBJ18120.1| recombinase A [Micromonospora rosaria]
          Length = 180

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 131/180 (72%), Positives = 154/180 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG P+GR+VE+YGPESSGKTT+ALH +A +Q+ GG  AFVDAEHALD  Y
Sbjct: 1   SIALDVALGVGGLPRGRVVEVYGPESSGKTTVALHAVANAQRNGGIAAFVDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDALLVSQPDTGEQALEIVDMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
            G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRL
Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRL 180


>gi|290889079|gb|ADD69889.1| recombination protein A [Rhizobium sp. CCBAU 15278]
          Length = 157

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 131/157 (83%), Positives = 149/157 (94%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLDIALGIGG PKGRI+E+YGPESSGKTTLAL TIA++QK GG CAFVDAEHALD
Sbjct: 1   STGSLGLDIALGIGGLPKGRIIEVYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGVDL NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG
Sbjct: 61  PVYARKLGVDLHNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +SLPG+QARLMSQALRKLT+SIS+SK +++FINQ+RM
Sbjct: 121 DSLPGLQARLMSQALRKLTASISKSKTMVIFINQIRM 157


>gi|307343390|emb|CBJ18136.1| recombinase A [Micromonospora sp. GUI34]
          Length = 180

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 131/180 (72%), Positives = 153/180 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           AR LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  ARALGVDTDALLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
            G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALK Y+SVRL
Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYASVRL 180


>gi|307343444|emb|CBJ18163.1| recombinase A [Micromonospora sp. SR4]
          Length = 183

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 131/183 (71%), Positives = 155/183 (84%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDALLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALK Y+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYA 180

Query: 228 SVR 230
           SVR
Sbjct: 181 SVR 183


>gi|193090243|gb|ACF15293.1| recombination protein A [Rhizobium sp. CCBAU 65813]
          Length = 166

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 135/167 (80%), Positives = 154/167 (92%), Gaps = 1/167 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LGS  +I E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA+
Sbjct: 1   SVMKLGSSENIVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V
Sbjct: 60  AQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           +DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S C++
Sbjct: 120 VDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNCMV 166


>gi|158631764|gb|ABW74987.1| RecA [Bradyrhizobium elkanii]
          Length = 168

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 128/166 (77%), Positives = 153/166 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE
Sbjct: 3   VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 63  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIGVM
Sbjct: 123 GEMGDALPGLQARLMSQALRKLTASINKSHTMVIFINQIRMKIGVM 168


>gi|68637149|emb|CAF21757.1| recombinase A [Lactobacillus crispatus]
          Length = 200

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 125/196 (63%), Positives = 166/196 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  V +GSL L+ A+G+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   ISTVPTGSLALNAAIGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIE
Sbjct: 62  NAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIK 240
           FYS+VRL++RR   IK
Sbjct: 182 FYSTVRLEVRRAEQIK 197


>gi|195928100|gb|ACG55706.1| recombination protein A [Bradyrhizobium sp. ORS301]
 gi|195928106|gb|ACG55709.1| recombination protein A [Bradyrhizobium sp. ORS305]
          Length = 181

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 133/181 (73%), Positives = 161/181 (88%), Gaps = 1/181 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 180

Query: 198 V 198
           +
Sbjct: 181 I 181


>gi|110002981|emb|CAJ57777.1| recombinase A [Sinorhizobium meliloti]
          Length = 166

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 137/167 (82%), Positives = 154/167 (92%), Gaps = 1/167 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           QALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARL
Sbjct: 120 QALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARL 166


>gi|195928282|gb|ACG55797.1| recombination protein A [Bradyrhizobium denitrificans]
          Length = 181

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 131/181 (72%), Positives = 161/181 (88%), Gaps = 1/181 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG      + +E VS+GSLGLDIALGIGG PKGR++EIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSMD-VETVSTGSLGLDIALGIGGLPKGRVIEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSHTMV 180

Query: 198 V 198
           +
Sbjct: 181 I 181


>gi|165909691|gb|ABY73750.1| recombination protein A [Mesorhizobium tarimense]
          Length = 159

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 129/158 (81%), Positives = 150/158 (94%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD 
Sbjct: 2   TGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDP 61

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+
Sbjct: 62  VYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGD 121

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           SLPG+QARLMSQALRKLT+SISRS  +++FINQ+RMK+
Sbjct: 122 SLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKM 159


>gi|110002957|emb|CAJ57765.1| recombinase A [Agrobacterium rubi]
 gi|295810386|emb|CBL81077.1| recombinase A [Agrobacterium sp. NCPPB 1650]
          Length = 166

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 136/167 (81%), Positives = 153/167 (91%), Gaps = 1/167 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  SI E +E +S+GSL LD+ALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNESIVE-VETISTGSLSLDVALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLHNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           QALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLPG+QARL
Sbjct: 120 QALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQARL 166


>gi|45825430|gb|AAS77564.1| RecA protein [Bradyrhizobium sp. ICMP 14753]
 gi|45825432|gb|AAS77565.1| RecA protein [Bradyrhizobium sp. ICMP 14754]
          Length = 177

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 135/178 (75%), Positives = 159/178 (89%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AALSQI+R +GKG++M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYGP
Sbjct: 1   LAAALSQIERQFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           I D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 120 ICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 177


>gi|209571811|gb|ACI62758.1| recombinase A [Bradyrhizobium yuanmingense]
          Length = 177

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 132/178 (74%), Positives = 159/178 (89%), Gaps = 1/178 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G++M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A
Sbjct: 1   GSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           ++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++
Sbjct: 60  EAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVL 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 120 VVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 177


>gi|45825434|gb|AAS77566.1| RecA protein [Bradyrhizobium liaoningense]
          Length = 177

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 135/178 (75%), Positives = 159/178 (89%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AALSQI+R +GKG++M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYGP
Sbjct: 1   LAAALSQIERQFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           I D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 120 ICDTLVRSGAVDVMVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 177


>gi|195928202|gb|ACG55757.1| recombination protein A [Bradyrhizobium sp. STM 3843]
 gi|195928204|gb|ACG55758.1| recombination protein A [Bradyrhizobium sp. STM 3844]
 gi|195928206|gb|ACG55759.1| recombination protein A [Bradyrhizobium sp. STM 3846]
          Length = 181

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 131/181 (72%), Positives = 161/181 (88%), Gaps = 1/181 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG      + IE +S+GSLGLD+ALG+GG PKGRIVEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSMD-IETISTGSLGLDVALGVGGLPKGRIVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 180

Query: 198 V 198
           +
Sbjct: 181 I 181


>gi|307343378|emb|CBJ18130.1| recombinase A [Micromonospora sp. GUI14]
          Length = 183

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 130/183 (71%), Positives = 156/183 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH++A +Q+ GG  AF+DAEHAL
Sbjct: 1   IPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHSVASAQRLGGIAAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALK Y+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYA 180

Query: 228 SVR 230
           SVR
Sbjct: 181 SVR 183


>gi|169792007|gb|ACA80307.1| recombination protein A [Sinorhizobium meliloti]
          Length = 169

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 135/168 (80%), Positives = 154/168 (91%), Gaps = 1/168 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           K ++M+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TI
Sbjct: 3   KRSVMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 61

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI
Sbjct: 62  AEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDI 121

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           +VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C+
Sbjct: 122 LVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNCM 169


>gi|195928128|gb|ACG55720.1| recombination protein A [Bradyrhizobium sp. ORS354]
          Length = 181

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 133/181 (73%), Positives = 161/181 (88%), Gaps = 1/181 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKSDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 180

Query: 198 V 198
           +
Sbjct: 181 I 181


>gi|29652212|gb|AAO87767.1| RecA [Listeria monocytogenes]
          Length = 196

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 132/198 (66%), Positives = 165/198 (83%), Gaps = 2/198 (1%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKT
Sbjct: 1   QIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKT 58

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LV
Sbjct: 59  TVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALV 118

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FIN
Sbjct: 119 RSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFIN 178

Query: 202 QMRMKIGVMFGSPETTTG 219
           Q+R K+GVMFG+PE T G
Sbjct: 179 QIREKVGVMFGNPEITPG 196


>gi|157092518|gb|ABV22069.1| recombination protein A [Rhizobium mesosinicum]
          Length = 168

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 135/165 (81%), Positives = 153/165 (92%), Gaps = 1/165 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LGS  +I E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TI
Sbjct: 3   KGSVMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 61

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 62  AEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDV 121

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           +V+DSVAALTPRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S
Sbjct: 122 LVVDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 166


>gi|307343440|emb|CBJ18161.1| recombinase A [Micromonospora sp. SR1]
          Length = 183

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 130/183 (71%), Positives = 155/183 (84%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHAL
Sbjct: 1   IPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALK Y+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYA 180

Query: 228 SVR 230
           SVR
Sbjct: 181 SVR 183


>gi|158147273|gb|ABW22690.1| recA [Rhizobium etli]
          Length = 159

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 130/159 (81%), Positives = 150/159 (94%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +S+GSLGLDIALG+GG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEH
Sbjct: 1   ETISTGSLGLDIALGVGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG
Sbjct: 61  ALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           +MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+R
Sbjct: 121 EMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIR 159


>gi|29652188|gb|AAO87755.1| RecA [Listeria monocytogenes]
          Length = 197

 Score =  277 bits (709), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 132/198 (66%), Positives = 165/198 (83%), Gaps = 2/198 (1%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKT
Sbjct: 2   QIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LV
Sbjct: 60  TVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FIN
Sbjct: 120 RSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFIN 179

Query: 202 QMRMKIGVMFGSPETTTG 219
           Q+R K+GVMFG+PE T G
Sbjct: 180 QIREKVGVMFGNPEITPG 197


>gi|110002965|emb|CAJ57769.1| recombinase A [Agrobacterium rhizogenes]
          Length = 166

 Score =  277 bits (709), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 136/167 (81%), Positives = 154/167 (92%), Gaps = 1/167 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           QALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARL
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARL 166


>gi|68637213|emb|CAF21771.1| recombinase A [Lactobacillus hamsteri]
          Length = 200

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 124/196 (63%), Positives = 166/196 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  V +GS+ LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   ISTVPTGSIALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIE
Sbjct: 62  NAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIK 240
           FYS++RL++R+   IK
Sbjct: 182 FYSTIRLEVRKAEQIK 197


>gi|315360831|gb|ADU05389.1| recombination protein A [Ensifer adhaerens]
          Length = 166

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 135/167 (80%), Positives = 154/167 (92%), Gaps = 1/167 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG + SI E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL 
Sbjct: 1   FGKGSMMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+
Sbjct: 60  TVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S
Sbjct: 120 DVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 166


>gi|157092520|gb|ABV22070.1| recombination protein A [Rhizobium mesosinicum]
          Length = 168

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 135/165 (81%), Positives = 153/165 (92%), Gaps = 1/165 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LGS  SI E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TI
Sbjct: 3   KGSVMKLGSNESIVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 61

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 62  AEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDV 121

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           +V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 122 LVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 166


>gi|317453432|emb|CBX31934.1| RecA protein [Rhizobium sp. 4148s]
          Length = 164

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 136/164 (82%), Positives = 152/164 (92%), Gaps = 1/164 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LGS  S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA+
Sbjct: 1   SIMKLGSNESVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAFVDAEHALD +YARKLGVDL NLLISQPDTGEQALEITD LVRSGAVD++V
Sbjct: 60  AQKKGGICAFVDAEHALDPVYARKLGVDLHNLLISQPDTGEQALEITDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           +DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+SK
Sbjct: 120 VDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSK 163


>gi|29652140|gb|AAO87731.1| RecA [Listeria monocytogenes]
 gi|29652196|gb|AAO87759.1| RecA [Listeria monocytogenes]
 gi|29652232|gb|AAO87777.1| RecA [Listeria monocytogenes]
 gi|29652254|gb|AAO87788.1| RecA [Listeria monocytogenes]
          Length = 196

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 132/198 (66%), Positives = 165/198 (83%), Gaps = 2/198 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MRMKIGVMFGSPETTTGG 220
           +R K+GVMFG+PE T GG
Sbjct: 179 IREKVGVMFGNPEITPGG 196


>gi|29652164|gb|AAO87743.1| RecA [Listeria monocytogenes]
          Length = 197

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 132/197 (67%), Positives = 165/197 (83%), Gaps = 2/197 (1%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESS
Sbjct: 3   ALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESS 60

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI +
Sbjct: 61  GKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAE 120

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +
Sbjct: 121 ALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAI 180

Query: 199 FINQMRMKIGVMFGSPE 215
           FINQ+R K+GVMFG+PE
Sbjct: 181 FINQIREKVGVMFGNPE 197


>gi|110002963|emb|CAJ57768.1| recombinase A [Rhizobium leguminosarum]
          Length = 166

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 134/167 (80%), Positives = 155/167 (92%), Gaps = 1/167 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARL
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARL 166


>gi|299737700|gb|ADJ37173.1| recombinase A [Bradyrhizobium liaoningense]
          Length = 163

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 130/163 (79%), Positives = 152/163 (93%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHAL
Sbjct: 1   VSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+M
Sbjct: 61  DPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIGVM
Sbjct: 121 GDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVM 163


>gi|307343364|emb|CBJ18123.1| recombinase A [Micromonospora viridifaciens]
          Length = 183

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 129/183 (70%), Positives = 155/183 (84%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + + S+ LD+ALG+GG P+GR++EIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHAL
Sbjct: 1   IPTSSIALDVALGVGGLPRGRVIEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDALLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNHTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVR 230
           SVR
Sbjct: 181 SVR 183


>gi|193795049|gb|ACF21658.1| RecA [Sinorhizobium sp. 209]
 gi|193795057|gb|ACF21661.1| RecA [Sinorhizobium sp. 74]
          Length = 165

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 137/166 (82%), Positives = 153/166 (92%), Gaps = 1/166 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKALEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEI
Sbjct: 1   SKALEAALSQIERSFGKGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           ALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARL
Sbjct: 120 ALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARL 165


>gi|300521783|gb|ADK26073.1| RecA protein [Vibrio communis]
          Length = 177

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 124/177 (70%), Positives = 156/177 (88%)

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSV
Sbjct: 1   GKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSV 60

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+P
Sbjct: 61  AALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNP 120

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           ETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IM
Sbjct: 121 ETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIM 177


>gi|169883836|gb|ACA98014.1| recombination protein A [Bradyrhizobium japonicum]
          Length = 167

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 130/163 (79%), Positives = 152/163 (93%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHAL
Sbjct: 5   VSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHAL 64

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+M
Sbjct: 65  DPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEM 124

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIGVM
Sbjct: 125 GDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVM 167


>gi|110002971|emb|CAJ57772.1| recombinase A [Sinorhizobium arboris]
 gi|110002975|emb|CAJ57774.1| recombinase A [Sinorhizobium arboris]
          Length = 166

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 135/167 (80%), Positives = 154/167 (92%), Gaps = 1/167 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARL
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARL 166


>gi|317453430|emb|CBX31933.1| RecA protein [Sinorhizobium meliloti]
          Length = 165

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 135/166 (81%), Positives = 153/166 (92%), Gaps = 1/166 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA+
Sbjct: 1   SIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+V
Sbjct: 60  AQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           IDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C+
Sbjct: 120 IDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNCM 165


>gi|307343416|emb|CBJ18149.1| recombinase A [Micromonospora sp. CR39]
          Length = 179

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 130/179 (72%), Positives = 154/179 (86%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH++A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHSVASAQRLGGIAAFIDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDAMLVSQPDTGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
            G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR
Sbjct: 121 VGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVR 179


>gi|317453428|emb|CBX31932.1| RecA protein [Sinorhizobium meliloti]
 gi|317453434|emb|CBX31935.1| RecA protein [Sinorhizobium meliloti]
          Length = 164

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 135/165 (81%), Positives = 152/165 (92%), Gaps = 1/165 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA+
Sbjct: 1   SIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+V
Sbjct: 60  AQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           IDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C
Sbjct: 120 IDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNC 164


>gi|29652154|gb|AAO87738.1| RecA [Listeria monocytogenes]
 gi|29652238|gb|AAO87780.1| RecA [Listeria monocytogenes]
 gi|29652278|gb|AAO87800.1| RecA [Listeria monocytogenes]
          Length = 197

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 132/198 (66%), Positives = 165/198 (83%), Gaps = 2/198 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MRMKIGVMFGSPETTTGG 220
           +R K+GVMFG+PE T GG
Sbjct: 179 IREKVGVMFGNPEITPGG 196


>gi|195928104|gb|ACG55708.1| recombination protein A [Bradyrhizobium sp. ORS304]
 gi|195928124|gb|ACG55718.1| recombination protein A [Bradyrhizobium sp. ORS343]
          Length = 181

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 132/181 (72%), Positives = 160/181 (88%), Gaps = 1/181 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG      + +E VSSGSLGLDIALG+GG PKGRIVEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRIVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIA 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 121 DTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 180

Query: 198 V 198
           +
Sbjct: 181 I 181


>gi|291172960|gb|ADD82747.1| recombinase A [Rhizobium sp. CCBAU 41230]
 gi|291172962|gb|ADD82748.1| recombinase A [Rhizobium sp. CCBAU 45226]
          Length = 155

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 131/155 (84%), Positives = 147/155 (94%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           L LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YA
Sbjct: 1   LSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           RKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLP
Sbjct: 61  RKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEMGDSLP 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           G+QARLMSQALRKLT+SIS+S C+++FINQ+RMKI
Sbjct: 121 GLQARLMSQALRKLTASISKSNCMVIFINQIRMKI 155


>gi|307343338|emb|CBJ18110.1| recombinase A [Micromonospora fulviviridis]
          Length = 179

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 130/179 (72%), Positives = 153/179 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDALLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
            G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR
Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVR 179


>gi|297523467|emb|CBH31141.1| recombination protein A [Mesorhizobium sp. LPYR1]
          Length = 168

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 131/169 (77%), Positives = 154/169 (91%), Gaps = 1/169 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           +R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GR +EIYGPESSGKTTL
Sbjct: 1   ERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRXIEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRS
Sbjct: 60  ALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           GA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISR
Sbjct: 120 GAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISR 168


>gi|226348061|gb|ACO50384.1| RecA [Rhizobium sullae]
          Length = 159

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 131/158 (82%), Positives = 149/158 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL
Sbjct: 2   ISTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+M
Sbjct: 62  DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEM 121

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           G+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RM
Sbjct: 122 GDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRM 159


>gi|31544676|ref|NP_853254.1| Recombinase A [Mycoplasma gallisepticum str. R(low)]
 gi|19338634|gb|AAL86741.1|AF443795_1 RecA [Mycoplasma gallisepticum str. R]
 gi|31541522|gb|AAP56822.1| RecA (Recombinase A) [Mycoplasma gallisepticum str. R(low)]
 gi|284930739|gb|ADC30678.1| RecA (Recombinase A) [Mycoplasma gallisepticum str. R(high)]
 gi|284931355|gb|ADC31293.1| RecA (Recombinase A) [Mycoplasma gallisepticum str. F]
          Length = 351

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 140/321 (43%), Positives = 206/321 (64%), Gaps = 12/321 (3%)

Query: 2   DYRKEMNIVDKSKALEAALSQI---------QRVYGKGAIMQLGSQGSIFEGIEVVSSGS 52
           +Y K MN +  SK     ++ I         Q+ +GK  I    ++    + +E +S+GS
Sbjct: 6   NYDKIMNNIKNSKRNNDRITNITNYDVLKLLQQKFGKTNIYL--NEKDELKDLEAISTGS 63

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           + LD ALG  GF KGRIVEIYG ES GKTTLAL TI Q+       AF+DAEHALD  Y 
Sbjct: 64  IKLDHALGTDGFIKGRIVEIYGNESCGKTTLALSTIKQAIDRNMRVAFIDAEHALDLRYV 123

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           ++LG+DL  L+I++PD GEQ  EI   L+++  +D+IV+DSVAAL P+ EIEG M +   
Sbjct: 124 KRLGIDLTKLIIARPDYGEQGFEIIKSLIKTELIDLIVVDSVAALVPKVEIEGKMEDQTM 183

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G  AR+MS+ L ++   +++    ++FINQ+R K+G+MFG+PE TTGG ALKFYSS RL+
Sbjct: 184 GTHARMMSRGLSRIQPLLAKHNVSVIFINQLREKVGIMFGNPEVTTGGKALKFYSSTRLE 243

Query: 233 IRRVGSIKD-KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASI 291
           +RR   IKD  ++  G +++  + KNK+++P      D  +  GIS   E+IDL +   I
Sbjct: 244 LRRAEIIKDAANNAIGIRSKATITKNKLSTPMTTTYIDFYFKSGISEVNEIIDLAIDYQI 303

Query: 292 VDKSGAWFSFKGQRLGQGREN 312
           +++SG+WFS++ +++ QG+ N
Sbjct: 304 IEQSGSWFSYQKEKIAQGKAN 324


>gi|68635362|emb|CAF21748.1| recombinase A [Lactobacillus animalis]
 gi|68637274|emb|CAF21783.1| recombinase A [Lactobacillus murinus]
          Length = 200

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 132/197 (67%), Positives = 164/197 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  V SGSL LD ALG+GGFP+GRIVEIYGPESSGKTT+AL  +A+ QK GG  A++DAE
Sbjct: 2   ISTVPSGSLALDEALGVGGFPRGRIVEIYGPESSGKTTVALQAVAEVQKQGGLAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD  YA  LGV++ +LL+SQP TGE+ L+I D LV SGAVDI+VIDSVAAL P+AEIE
Sbjct: 62  NALDPAYATALGVNIDDLLLSQPGTGEEGLQIADALVSSGAVDIVVIDSVAALVPKAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GEMGDSHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FYS++RL++RR   IKD
Sbjct: 182 FYSTIRLEVRRAEQIKD 198


>gi|331029419|gb|AEC49859.1| recombinase A [Bradyrhizobium sp. SEMIA 6395]
          Length = 179

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 134/180 (74%), Positives = 159/180 (88%), Gaps = 1/180 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKAL AALSQI+R +GKG++M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEI
Sbjct: 1   SKALAAALSQIERQFGKGSVMKLGKSDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+  ++
Sbjct: 120 ALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAXXNK 179


>gi|326328144|gb|ADZ54139.1| recombination protein A [Bradyrhizobium sp. CCBAU 15772]
          Length = 164

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 129/163 (79%), Positives = 152/163 (93%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHAL
Sbjct: 2   VSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+M
Sbjct: 62  DPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEM 121

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIGVM
Sbjct: 122 GDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVM 164


>gi|217037921|gb|ACJ76430.1| RecA [Bradyrhizobium sp. STM 3564]
          Length = 173

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 135/174 (77%), Positives = 155/174 (89%), Gaps = 1/174 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKAL AALSQI+R +GKG++M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEI
Sbjct: 1   SKALAAALSQIERQFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           ALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKL
Sbjct: 120 ALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKL 173


>gi|68637329|emb|CAF21797.1| recombinase A [Lactobacillus reuteri]
          Length = 200

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 129/194 (66%), Positives = 165/194 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VSSGSL +D ALGIGG+P+GRIVEIYGPESSGKTT+ALH +A+ Q+ GGT A++DAE+AL
Sbjct: 5   VSSGSLAIDKALGIGGYPRGRIVEIYGPESSGKTTVALHAVAEVQRQGGTAAYIDAENAL 64

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA  LGV++ +LL+SQPD+GE+ LEI D L+ SGAVD++++DSVAAL PRAEI+GDM
Sbjct: 65  DPQYAEALGVNIDDLLLSQPDSGEEGLEIADALISSGAVDLVIVDSVAALVPRAEIDGDM 124

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G++  G+QARLMSQALRKL+  I+++K I +FINQ+R K+GVMFG+PETTTGG ALKFYS
Sbjct: 125 GDTHVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTTGGRALKFYS 184

Query: 228 SVRLDIRRVGSIKD 241
           +  L+IRR   IK+
Sbjct: 185 TSGLEIRRAEQIKN 198


>gi|307343368|emb|CBJ18125.1| recombinase A [Micromonospora sp. GUI2]
          Length = 182

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 130/181 (71%), Positives = 154/181 (85%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD 
Sbjct: 2   TGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDP 61

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
            YA+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+
Sbjct: 62  EYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGD 121

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           S  G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALK Y+SV
Sbjct: 122 SHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYASV 181

Query: 230 R 230
           R
Sbjct: 182 R 182


>gi|299737708|gb|ADJ37177.1| recombinase A [Bradyrhizobium yuanmingense]
          Length = 173

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 130/170 (76%), Positives = 154/170 (90%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
           G+   GIE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG C
Sbjct: 1   GNDAHGIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGIC 60

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL 
Sbjct: 61  AFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALV 120

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK G
Sbjct: 121 PKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKTG 170


>gi|254169587|gb|ACT64884.1| recombinase A [Rhizobium soli]
          Length = 164

 Score =  276 bits (707), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 138/164 (84%), Positives = 151/164 (92%), Gaps = 1/164 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LGS  SI E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA+
Sbjct: 1   SIMKLGSNDSIVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAFVDAEHALD +YARKLGVDL NLLISQPDTGEQALEITD LVRSGAVD++V
Sbjct: 60  AQKGGGVCAFVDAEHALDPVYARKLGVDLHNLLISQPDTGEQALEITDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           IDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+SK
Sbjct: 120 IDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSK 163


>gi|110003013|emb|CAJ57793.1| recombinase A [Ensifer adhaerens]
          Length = 166

 Score =  276 bits (707), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 136/167 (81%), Positives = 153/167 (91%), Gaps = 1/167 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARL
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARL 166


>gi|209163977|gb|ACI40696.1| RecA [Clostridium septicum]
 gi|209163979|gb|ACI40697.1| RecA [Clostridium septicum]
 gi|209163981|gb|ACI40698.1| RecA [Clostridium septicum]
 gi|209163983|gb|ACI40699.1| RecA [Clostridium septicum]
 gi|209163985|gb|ACI40700.1| RecA [Clostridium septicum]
 gi|209163987|gb|ACI40701.1| RecA [Clostridium septicum]
 gi|209163989|gb|ACI40702.1| RecA [Clostridium septicum]
 gi|209163991|gb|ACI40703.1| RecA [Clostridium septicum]
 gi|209163993|gb|ACI40704.1| RecA [Clostridium septicum]
 gi|209163995|gb|ACI40705.1| RecA [Clostridium septicum]
 gi|209163997|gb|ACI40706.1| RecA [Clostridium septicum]
 gi|209163999|gb|ACI40707.1| RecA [Clostridium septicum]
 gi|209164001|gb|ACI40708.1| RecA [Clostridium septicum]
 gi|209164003|gb|ACI40709.1| RecA [Clostridium septicum]
 gi|209164005|gb|ACI40710.1| RecA [Clostridium septicum]
 gi|209164007|gb|ACI40711.1| RecA [Clostridium septicum]
 gi|209164009|gb|ACI40712.1| RecA [Clostridium septicum]
 gi|209164011|gb|ACI40713.1| RecA [Clostridium septicum]
 gi|209164013|gb|ACI40714.1| RecA [Clostridium septicum]
 gi|209164015|gb|ACI40715.1| RecA [Clostridium septicum]
 gi|209164017|gb|ACI40716.1| RecA [Clostridium septicum]
 gi|209164019|gb|ACI40717.1| RecA [Clostridium septicum]
 gi|209164021|gb|ACI40718.1| RecA [Clostridium septicum]
 gi|209164023|gb|ACI40719.1| RecA [Clostridium septicum]
 gi|209164025|gb|ACI40720.1| RecA [Clostridium septicum]
 gi|209164027|gb|ACI40721.1| RecA [Clostridium septicum]
 gi|209164029|gb|ACI40722.1| RecA [Clostridium septicum]
 gi|209164031|gb|ACI40723.1| RecA [Clostridium septicum]
 gi|209164033|gb|ACI40724.1| RecA [Clostridium septicum]
 gi|209164035|gb|ACI40725.1| RecA [Clostridium septicum]
 gi|209164037|gb|ACI40726.1| RecA [Clostridium septicum]
 gi|209164039|gb|ACI40727.1| RecA [Clostridium septicum]
 gi|209164041|gb|ACI40728.1| RecA [Clostridium septicum]
 gi|209164043|gb|ACI40729.1| RecA [Clostridium septicum]
 gi|209164045|gb|ACI40730.1| RecA [Clostridium septicum]
 gi|209164047|gb|ACI40731.1| RecA [Clostridium septicum]
 gi|209164049|gb|ACI40732.1| RecA [Clostridium septicum]
 gi|209164051|gb|ACI40733.1| RecA [Clostridium septicum]
 gi|209164053|gb|ACI40734.1| RecA [Clostridium septicum]
 gi|209164055|gb|ACI40735.1| RecA [Clostridium septicum]
 gi|209164057|gb|ACI40736.1| RecA [Clostridium septicum]
 gi|209164059|gb|ACI40737.1| RecA [Clostridium septicum]
 gi|209164061|gb|ACI40738.1| RecA [Clostridium septicum]
 gi|209164063|gb|ACI40739.1| RecA [Clostridium septicum]
 gi|209164065|gb|ACI40740.1| RecA [Clostridium septicum]
 gi|209164067|gb|ACI40741.1| RecA [Clostridium septicum]
 gi|209164069|gb|ACI40742.1| RecA [Clostridium septicum]
 gi|209164071|gb|ACI40743.1| RecA [Clostridium septicum]
 gi|209164073|gb|ACI40744.1| RecA [Clostridium septicum]
 gi|209164075|gb|ACI40745.1| RecA [Clostridium septicum]
 gi|209164077|gb|ACI40746.1| RecA [Clostridium septicum]
 gi|209164079|gb|ACI40747.1| RecA [Clostridium septicum]
 gi|209164081|gb|ACI40748.1| RecA [Clostridium septicum]
 gi|209164083|gb|ACI40749.1| RecA [Clostridium septicum]
 gi|209164085|gb|ACI40750.1| RecA [Clostridium septicum]
 gi|209164087|gb|ACI40751.1| RecA [Clostridium septicum]
 gi|209164089|gb|ACI40752.1| RecA [Clostridium septicum]
 gi|209164091|gb|ACI40753.1| RecA [Clostridium septicum]
 gi|209164093|gb|ACI40754.1| RecA [Clostridium septicum]
 gi|209164095|gb|ACI40755.1| RecA [Clostridium septicum]
 gi|209164097|gb|ACI40756.1| RecA [Clostridium septicum]
 gi|209164099|gb|ACI40757.1| RecA [Clostridium septicum]
 gi|209164101|gb|ACI40758.1| RecA [Clostridium septicum]
 gi|209164103|gb|ACI40759.1| RecA [Clostridium septicum]
 gi|209164105|gb|ACI40760.1| RecA [Clostridium septicum]
 gi|209164107|gb|ACI40761.1| RecA [Clostridium septicum]
 gi|209164109|gb|ACI40762.1| RecA [Clostridium septicum]
 gi|209164111|gb|ACI40763.1| RecA [Clostridium septicum]
 gi|209164113|gb|ACI40764.1| RecA [Clostridium septicum]
 gi|209164115|gb|ACI40765.1| RecA [Clostridium septicum]
 gi|209164117|gb|ACI40766.1| RecA [Clostridium septicum]
 gi|209164119|gb|ACI40767.1| RecA [Clostridium septicum]
 gi|209164121|gb|ACI40768.1| RecA [Clostridium septicum]
 gi|209164123|gb|ACI40769.1| RecA [Clostridium septicum]
 gi|209164125|gb|ACI40770.1| RecA [Clostridium septicum]
 gi|209164127|gb|ACI40771.1| RecA [Clostridium septicum]
 gi|209164129|gb|ACI40772.1| RecA [Clostridium septicum]
 gi|209164131|gb|ACI40773.1| RecA [Clostridium septicum]
 gi|209164133|gb|ACI40774.1| RecA [Clostridium septicum]
 gi|209164135|gb|ACI40775.1| RecA [Clostridium septicum]
 gi|209164137|gb|ACI40776.1| RecA [Clostridium septicum]
 gi|209164139|gb|ACI40777.1| RecA [Clostridium septicum]
 gi|209164141|gb|ACI40778.1| RecA [Clostridium septicum]
 gi|209164143|gb|ACI40779.1| RecA [Clostridium septicum]
 gi|209164145|gb|ACI40780.1| RecA [Clostridium septicum]
 gi|209164147|gb|ACI40781.1| RecA [Clostridium septicum]
 gi|209164149|gb|ACI40782.1| RecA [Clostridium septicum]
 gi|209164151|gb|ACI40783.1| RecA [Clostridium septicum]
 gi|209164153|gb|ACI40784.1| RecA [Clostridium septicum]
 gi|209164155|gb|ACI40785.1| RecA [Clostridium septicum]
 gi|209164157|gb|ACI40786.1| RecA [Clostridium septicum]
 gi|209164159|gb|ACI40787.1| RecA [Clostridium septicum]
 gi|209164161|gb|ACI40788.1| RecA [Clostridium septicum]
 gi|209164163|gb|ACI40789.1| RecA [Clostridium septicum]
 gi|209164165|gb|ACI40790.1| RecA [Clostridium septicum]
 gi|209164167|gb|ACI40791.1| RecA [Clostridium septicum]
 gi|209164169|gb|ACI40792.1| RecA [Clostridium septicum]
 gi|209164171|gb|ACI40793.1| RecA [Clostridium septicum]
 gi|209164173|gb|ACI40794.1| RecA [Clostridium septicum]
 gi|209164175|gb|ACI40795.1| RecA [Clostridium septicum]
 gi|209164177|gb|ACI40796.1| RecA [Clostridium septicum]
 gi|209164179|gb|ACI40797.1| RecA [Clostridium septicum]
 gi|209164181|gb|ACI40798.1| RecA [Clostridium septicum]
 gi|209164183|gb|ACI40799.1| RecA [Clostridium septicum]
 gi|209164185|gb|ACI40800.1| RecA [Clostridium septicum]
 gi|209164187|gb|ACI40801.1| RecA [Clostridium septicum]
 gi|209164189|gb|ACI40802.1| RecA [Clostridium septicum]
 gi|209164191|gb|ACI40803.1| RecA [Clostridium septicum]
          Length = 188

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 130/186 (69%), Positives = 159/186 (85%)

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YAR LGVD ++L++SQPDTGEQALEI + LVRSGA+D+IVIDSVAAL PRAEIEG+MG+S
Sbjct: 3   YARNLGVDTESLIVSQPDTGEQALEIAEALVRSGAIDVIVIDSVAALVPRAEIEGEMGDS 62

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
             G+QARLMSQALRKLT +I ++ C+ +FINQ+R K+GVMFG+PETTTGG ALKFY+SVR
Sbjct: 63  HVGLQARLMSQALRKLTGTIQKTGCVAIFINQLREKVGVMFGNPETTTGGRALKFYASVR 122

Query: 231 LDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS 290
           LD+RR+ SIK  + I GN+TRVKV+KNK+A PFKQ EFDIMY EGIS  G ++D+GVK  
Sbjct: 123 LDVRRIDSIKQGEGIVGNRTRVKVMKNKVAPPFKQAEFDIMYNEGISRTGNIVDVGVKEG 182

Query: 291 IVDKSG 296
           I+ KSG
Sbjct: 183 IIQKSG 188


>gi|193795046|gb|ACF21657.1| RecA [Sinorhizobium sp. 72]
 gi|193795053|gb|ACF21660.1| RecA [Sinorhizobium sp. 206]
          Length = 165

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 137/166 (82%), Positives = 153/166 (92%), Gaps = 1/166 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKALEAALSQI+R +GKG+IM+LGS  +I E IE VS+GSL LDIALGIGG PKGRIVEI
Sbjct: 1   SKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           ALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARL
Sbjct: 120 ALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARL 165


>gi|25808111|gb|AAN74120.1| RecA [Helicobacter pylori]
          Length = 191

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 126/190 (66%), Positives = 159/190 (83%), Gaps = 1/190 (0%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NL
Sbjct: 1   GVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENL 60

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           L+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS A
Sbjct: 61  LVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHA 120

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           LRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K 
Sbjct: 121 LRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQ 180

Query: 242 KDSITGNQTR 251
            +   GN+ +
Sbjct: 181 NEQHIGNRAK 190


>gi|307343372|emb|CBJ18127.1| recombinase A [Micromonospora sp. GUI8]
          Length = 181

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 130/180 (72%), Positives = 154/180 (85%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD 
Sbjct: 2   TGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDP 61

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
            YA+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+
Sbjct: 62  EYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGD 121

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           S  G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SV
Sbjct: 122 SHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASV 181


>gi|229086332|ref|ZP_04218509.1| Endonuclease PI-MboI [Bacillus cereus Rock3-44]
 gi|228696944|gb|EEL49752.1| Endonuclease PI-MboI [Bacillus cereus Rock3-44]
          Length = 208

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 130/203 (64%), Positives = 169/203 (83%), Gaps = 2/203 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG Q      I  + SGSL LD+ALG+GG+P+GR++
Sbjct: 3   DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RKISTIPSGSLALDVALGVGGYPRGRVI 60

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPDTG
Sbjct: 61  EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI + LVRSGA+DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I
Sbjct: 121 EQGLEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAI 180

Query: 191 SRSKCILVFINQMRMKIGVMFGS 213
           ++SK I +FINQ+R K+GVMFG+
Sbjct: 181 NKSKTIAIFINQIREKVGVMFGN 203


>gi|110002961|emb|CAJ57767.1| recombinase A [Rhizobium gallicum]
          Length = 166

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 135/167 (80%), Positives = 154/167 (92%), Gaps = 1/167 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSL LDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLSLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARL
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARL 166


>gi|325512771|gb|ADZ23574.1| RecA [Sinorhizobium fredii]
 gi|325512799|gb|ADZ23588.1| RecA [Sinorhizobium fredii]
 gi|325512817|gb|ADZ23597.1| RecA [Sinorhizobium fredii]
 gi|325512837|gb|ADZ23607.1| RecA [Sinorhizobium fredii]
 gi|325512839|gb|ADZ23608.1| RecA [Sinorhizobium fredii]
          Length = 155

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 131/155 (84%), Positives = 146/155 (94%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           LGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYA
Sbjct: 1   LGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           RKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLP
Sbjct: 61  RKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLP 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           GMQARLMSQALRKLT+SIS+S C+++FINQ+RMKI
Sbjct: 121 GMQARLMSQALRKLTASISKSNCMVIFINQIRMKI 155


>gi|68637294|emb|CAF21788.1| recombinase A [Lactobacillus paracasei subsp. tolerans]
          Length = 200

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 133/196 (67%), Positives = 164/196 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           + VVSSGSL +D ALG+GGFP+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   VSVVSSGSLAVDDALGVGGFPRGRIVEIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGV++  LL+SQPDTGEQ LEI D L  S A+DI+VIDSVAAL PRAEIE
Sbjct: 62  NAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELFASVAIDIVVIDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG++  G+QARLMS ALRKL+ SI+++K I +FINQ+R K+G++FGSPETT GG ALK
Sbjct: 122 GDMGDAHVGLQARLMSLALRKLSGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIK 240
           FY++VRL+IRR   IK
Sbjct: 182 FYATVRLEIRRSEQIK 197


>gi|29652132|gb|AAO87727.1| RecA [Listeria monocytogenes]
          Length = 197

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 132/199 (66%), Positives = 166/199 (83%), Gaps = 2/199 (1%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGP
Sbjct: 1   LDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK 
Sbjct: 119 IAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKT 178

Query: 196 ILVFINQMRMKIGVMFGSP 214
           I +FINQ+R K+GVMFG+P
Sbjct: 179 IAIFINQIREKVGVMFGNP 197


>gi|225550735|ref|ZP_03771684.1| protein RecA [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
 gi|225379889|gb|EEH02251.1| protein RecA [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
          Length = 333

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 129/281 (45%), Positives = 191/281 (67%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +  +S+GS+ +D   GI G P G+I EIYG ESSGKTT+AL TIA+ QK GGT   +D
Sbjct: 34  EKVSAISTGSIHIDQITGINGIPVGKITEIYGNESSGKTTIALQTIAECQKKGGTAVLLD 93

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E + D  YA+ L VDL  L+I+QP TGEQA ++ + L+++ ++D+IV+DSVAA+ P +E
Sbjct: 94  LEGSFDLNYAKSLKVDLTKLIITQPQTGEQAFDMIETLIKTNSIDLIVVDSVAAMIPESE 153

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
            + +M E+L G  ARLMS+ LRK+   +++S+  ++FINQ+R KI   FG+PE TTGG A
Sbjct: 154 YQANMSEALMGAHARLMSKGLRKIQPLMNKSQTAIIFINQLREKINTFFGNPEMTTGGKA 213

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LKFY+S+R++ R+   IK+  +  G +T+V  VKNK+A P +    D+ +G G  +  E+
Sbjct: 214 LKFYASLRIETRKADLIKEGINKIGIKTKVTTVKNKLAPPLQTCLIDVFFGHGFDYDNEI 273

Query: 283 IDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ID  ++  I+ K+G+WF F   ++GQGRE  K  L +N E+
Sbjct: 274 IDFAIQYGILKKNGSWFYFDDNKIGQGREQLKNTLLKNNEL 314


>gi|307343384|emb|CBJ18133.1| recombinase A [Micromonospora sp. GUI23]
          Length = 180

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 130/180 (72%), Positives = 154/180 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH++A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHSVASAQRLGGIAAFIDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDAMLVSQPDTGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
            G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALK Y+SVRL
Sbjct: 121 VGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYASVRL 180


>gi|45825426|gb|AAS77562.1| RecA protein [Bradyrhizobium sp. ICMP 14291]
 gi|45825428|gb|AAS77563.1| RecA protein [Bradyrhizobium sp. ICMP 14752]
          Length = 177

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 132/178 (74%), Positives = 159/178 (89%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AALSQI+R +GKG++M+LG      + +E VSSGSLGLDIALGIGG PKGR+VEIYGP
Sbjct: 1   LAAALSQIERQFGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           I D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 120 ICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 177


>gi|307343380|emb|CBJ18131.1| recombinase A [Micromonospora sp. GUI16]
          Length = 180

 Score =  276 bits (706), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 130/180 (72%), Positives = 153/180 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ LH +A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGIGGLPRGRVVEIYGPESSGKTTVXLHAVANAQRNGGIAAFIDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
            G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRL
Sbjct: 121 VGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRL 180


>gi|168362252|ref|ZP_02695431.1| protein RecA [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|209554392|ref|YP_002284503.1| recombinase A [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
 gi|226726298|sp|B5ZAR3|RECA_UREU1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|171903226|gb|EDT49515.1| protein RecA [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|209541893|gb|ACI60122.1| protein RecA [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
          Length = 333

 Score =  276 bits (706), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 129/281 (45%), Positives = 191/281 (67%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +  +S+GS+ +D   GI G P G+I EIYG ESSGKTT+AL TIA+ QK GGT   +D
Sbjct: 34  EKVSAISTGSIHIDQITGINGIPVGKITEIYGNESSGKTTIALQTIAECQKKGGTAVLLD 93

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E + D  YA+ L VDL  L+I+QP TGEQA ++ + L+++ ++D+IV+DSVAA+ P +E
Sbjct: 94  LEGSFDLNYAKSLKVDLTKLIITQPQTGEQAFDMIETLIKTNSIDLIVVDSVAAMIPESE 153

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
            + +M E+L G  ARLMS+ LRK+   +++S+  ++FINQ+R KI   FG+PE TTGG A
Sbjct: 154 YQANMSEALMGAHARLMSKGLRKIQPLMNKSQTAIIFINQLREKINTFFGNPEMTTGGKA 213

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LKFY+S+R++ R+   IK+  +  G +T+V  VKNK+A P +    D+ +G G  +  E+
Sbjct: 214 LKFYASLRIETRKADLIKEGINKIGIKTKVTTVKNKLAPPLQTCFIDVFFGHGFDYDNEI 273

Query: 283 IDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ID  ++  I+ K+G+WF F   ++GQGRE  K  L +N E+
Sbjct: 274 IDFAIQYGILKKNGSWFYFDDNKIGQGREQLKNTLLKNNEL 314


>gi|219888946|emb|CAP59384.1| RecA protein [Mesorhizobium metallidurans]
 gi|219888948|emb|CAP59385.1| RecA protein [Mesorhizobium metallidurans]
 gi|219888950|emb|CAP59386.1| RecA protein [Mesorhizobium metallidurans]
 gi|219888952|emb|CAP59387.1| RecA protein [Mesorhizobium metallidurans]
 gi|219888954|emb|CAP59388.1| RecA protein [Mesorhizobium metallidurans]
 gi|219888956|emb|CAP59389.1| RecA protein [Mesorhizobium metallidurans]
          Length = 163

 Score =  276 bits (706), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 129/158 (81%), Positives = 148/158 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAE
Sbjct: 6   IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAE 65

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIE
Sbjct: 66  HALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIE 125

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           G+MG+SLPG+QARLMSQALRKLT+SISRS  +++FINQ
Sbjct: 126 GEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFINQ 163


>gi|199595082|gb|ACH91005.1| RecA [Stenotrophomonas maltophilia]
 gi|199595084|gb|ACH91006.1| RecA [Stenotrophomonas maltophilia]
 gi|301318414|gb|ADK67122.1| RecA protein [Stenotrophomonas maltophilia]
 gi|301318422|gb|ADK67126.1| RecA protein [Stenotrophomonas maltophilia]
          Length = 182

 Score =  276 bits (706), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 135/182 (74%), Positives = 156/182 (85%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +E + +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKLGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+V+DSVAALTP+AE
Sbjct: 61  AEHALDPIYAGKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVVDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS  ++VFINQ+R KIGVM    SPE TTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRHKIGVMMPGQSPEVTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|213950714|gb|ACJ54602.1| recombination protein A [Rhizobium fabae]
          Length = 169

 Score =  276 bits (706), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 133/165 (80%), Positives = 154/165 (93%), Gaps = 1/165 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TI
Sbjct: 4   KGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTI 62

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD+
Sbjct: 63  AEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDV 122

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           +V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 123 LVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 167


>gi|167972403|ref|ZP_02554680.1| protein RecA [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|167974935|ref|ZP_02557212.1| protein RecA [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|167975176|ref|ZP_02557453.1| protein RecA [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|167989091|ref|ZP_02570762.1| protein RecA [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|195867372|ref|ZP_03079376.1| protein RecA [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|198273516|ref|ZP_03206052.1| protein RecA [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|225551153|ref|ZP_03772099.1| protein RecA [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|184209338|gb|EDU06381.1| protein RecA [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188018696|gb|EDU56736.1| protein RecA [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188997690|gb|EDU66787.1| protein RecA [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|195659996|gb|EDX53376.1| protein RecA [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|195660848|gb|EDX54101.1| protein RecA [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|198250036|gb|EDY74816.1| protein RecA [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|225378968|gb|EEH01333.1| protein RecA [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
          Length = 333

 Score =  276 bits (706), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 129/281 (45%), Positives = 191/281 (67%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +  +S+GS+ +D   GI G P G+I EIYG ESSGKTT+AL TIA+ QK GGT   +D
Sbjct: 34  EKVSAISTGSIHIDQITGINGIPVGKITEIYGNESSGKTTIALQTIAECQKKGGTAVLLD 93

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E + D  YA+ L VDL  L+I+QP TGEQA ++ + L+++ ++D+IV+DSVAA+ P +E
Sbjct: 94  LEGSFDLNYAKSLKVDLTKLIITQPQTGEQAFDMIETLIKTNSIDLIVVDSVAAMIPESE 153

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
            + +M E+L G  ARLMS+ LRK+   +++S+  ++FINQ+R KI   FG+PE TTGG A
Sbjct: 154 YQANMSEALMGAHARLMSKGLRKIQPLMNKSQTAIIFINQLREKINAFFGNPEMTTGGKA 213

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LKFY+S+R++ R+   IK+  +  G +T+V  VKNK+A P +    D+ +G G  +  E+
Sbjct: 214 LKFYASLRIETRKADLIKEGINKIGIKTKVTTVKNKLAPPLQTCFIDVFFGHGFDYDNEI 273

Query: 283 IDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ID  ++  I+ K+G+WF F   ++GQGRE  K  L +N E+
Sbjct: 274 IDFAIQYGILKKNGSWFYFDDNKIGQGREQLKNTLLKNNEL 314


>gi|195928114|gb|ACG55713.1| recombination protein A [Bradyrhizobium sp. ORS336]
          Length = 181

 Score =  276 bits (706), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 131/181 (72%), Positives = 160/181 (88%), Gaps = 1/181 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG      + +E VSSGSLGLDIALG+GG PKGRIVEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRIVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 180

Query: 198 V 198
           +
Sbjct: 181 I 181


>gi|169883834|gb|ACA98013.1| recombination protein A [Bradyrhizobium japonicum]
          Length = 167

 Score =  276 bits (706), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 128/163 (78%), Positives = 152/163 (93%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHAL
Sbjct: 5   VSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHAL 64

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+M
Sbjct: 65  DPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEM 124

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIGVM
Sbjct: 125 GDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVM 167


>gi|307343141|emb|CBJ18100.1| recombinase A [Micromonospora chersina]
          Length = 183

 Score =  276 bits (705), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 129/183 (70%), Positives = 154/183 (84%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + + S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHAL
Sbjct: 1   IPTSSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDALLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALK Y+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYA 180

Query: 228 SVR 230
           SVR
Sbjct: 181 SVR 183


>gi|158631760|gb|ABW74985.1| RecA [Bradyrhizobium sp. CCBAU 83386]
          Length = 168

 Score =  276 bits (705), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 127/164 (77%), Positives = 152/164 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 5   VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 64

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 65  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 124

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIG
Sbjct: 125 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIG 168


>gi|213012456|gb|ACJ38794.1| recombination-repair protein [Vibrio sp. R-651]
          Length = 178

 Score =  276 bits (705), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 122/174 (70%), Positives = 156/174 (89%)

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+
Sbjct: 1   QREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVV 60

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSV+ALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMF
Sbjct: 61  DSVSALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMF 120

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           G+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+
Sbjct: 121 GNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKE 174


>gi|29652214|gb|AAO87768.1| RecA [Listeria monocytogenes]
          Length = 196

 Score =  276 bits (705), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 131/196 (66%), Positives = 164/196 (83%), Gaps = 2/196 (1%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKT
Sbjct: 2   QIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LV
Sbjct: 60  TVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FIN
Sbjct: 120 RSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFIN 179

Query: 202 QMRMKIGVMFGSPETT 217
           Q+R K+GVMFG+PE T
Sbjct: 180 QIREKVGVMFGNPEIT 195


>gi|193090241|gb|ACF15292.1| recombination protein A [Rhizobium sp. CCBAU 65810]
          Length = 166

 Score =  276 bits (705), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 135/167 (80%), Positives = 153/167 (91%), Gaps = 1/167 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LGS  SI E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA+
Sbjct: 1   SVMKLGSNDSIVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V
Sbjct: 60  AQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           +DSVAALTPRAEIEGDMG+SLPG+QARL SQALRKLT+SIS+SK ++
Sbjct: 120 VDSVAALTPRAEIEGDMGDSLPGLQARLFSQALRKLTASISKSKTMV 166


>gi|45825422|gb|AAS77560.1| RecA protein [Bradyrhizobium sp. ICMP 14533]
          Length = 177

 Score =  276 bits (705), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 133/178 (74%), Positives = 158/178 (88%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AALSQI+R +GKG++M+LG      + +E VSSGSLGLDIALGIGG PKGR+VEIYGP
Sbjct: 1   LAAALSQIERQFGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           I D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 120 ICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 177


>gi|163960875|gb|ABY49982.1| recombination protein A [Rhizobium etli]
          Length = 160

 Score =  276 bits (705), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 131/157 (83%), Positives = 148/157 (94%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA+SQK GG CAFVDAE
Sbjct: 4   IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAESQKKGGICAFVDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIE
Sbjct: 64  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           G+MG+SLPG+QARLMSQALRKLT+SIS+SK +++FI 
Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISKSKTMVIFIT 160


>gi|307343151|emb|CBJ18105.1| recombinase A [Micromonospora eburnea]
          Length = 179

 Score =  276 bits (705), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 129/179 (72%), Positives = 153/179 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG P+GR++EIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGVGGLPRGRVIEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDALLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
            G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR
Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVR 179


>gi|291172966|gb|ADD82750.1| recombinase A [Rhizobium sp. CCBAU 85032]
          Length = 156

 Score =  275 bits (704), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 129/156 (82%), Positives = 147/156 (94%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SL LDIALGIGG PKGR++EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +Y
Sbjct: 1   SLSLDIALGIGGLPKGRVIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           ARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAAL PRAEIEG+MG+SL
Sbjct: 61  ARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALVPRAEIEGEMGDSL 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           PG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKI
Sbjct: 121 PGLQARLMSQALRKLTASISKSNCMVIFINQIRMKI 156


>gi|193795038|gb|ACF21655.1| RecA [Rhizobium tropici]
          Length = 165

 Score =  275 bits (704), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 135/166 (81%), Positives = 153/166 (92%), Gaps = 1/166 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKALEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI+EI
Sbjct: 1   SKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           ALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARL
Sbjct: 120 ALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARL 165


>gi|29652166|gb|AAO87744.1| RecA [Listeria monocytogenes]
          Length = 194

 Score =  275 bits (704), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 131/196 (66%), Positives = 164/196 (83%), Gaps = 2/196 (1%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESS
Sbjct: 1   ALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESS 58

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI +
Sbjct: 59  GKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAE 118

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +
Sbjct: 119 ALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAI 178

Query: 199 FINQMRMKIGVMFGSP 214
           FINQ+R K+GVMFG+P
Sbjct: 179 FINQIREKVGVMFGNP 194


>gi|290889063|gb|ADD69881.1| recombination protein A [Rhizobium leguminosarum]
 gi|290889065|gb|ADD69882.1| recombination protein A [Rhizobium leguminosarum]
 gi|290889083|gb|ADD69891.1| recombination protein A [Rhizobium leguminosarum]
          Length = 157

 Score =  275 bits (704), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 129/157 (82%), Positives = 149/157 (94%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD
Sbjct: 1   STGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG
Sbjct: 61  PVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RM
Sbjct: 121 DSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRM 157


>gi|29652080|gb|AAO87702.1| RecA [Listeria monocytogenes]
          Length = 196

 Score =  275 bits (704), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 131/196 (66%), Positives = 164/196 (83%), Gaps = 2/196 (1%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESS
Sbjct: 3   ALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESS 60

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI +
Sbjct: 61  GKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAE 120

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +
Sbjct: 121 ALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAI 180

Query: 199 FINQMRMKIGVMFGSP 214
           FINQ+R K+GVMFG+P
Sbjct: 181 FINQIREKVGVMFGNP 196


>gi|290889055|gb|ADD69877.1| recombination protein A [Rhizobium sp. CCBAU 45133]
 gi|290889077|gb|ADD69888.1| recombination protein A [Agrobacterium rhizogenes]
          Length = 157

 Score =  275 bits (703), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 130/157 (82%), Positives = 148/157 (94%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD
Sbjct: 1   STGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG
Sbjct: 61  PVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RM
Sbjct: 121 DSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRM 157


>gi|262064670|gb|ACY07569.1| recombinase A [Rhizobium leguminosarum]
          Length = 169

 Score =  275 bits (703), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 134/170 (78%), Positives = 155/170 (91%), Gaps = 1/170 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI   +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+G I+EIYGPESSGKT
Sbjct: 1   QIDGSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGXIIEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LV
Sbjct: 60  TLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           RSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 RSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 169


>gi|307343342|emb|CBJ18112.1| recombinase A [Micromonospora lupini]
          Length = 179

 Score =  275 bits (703), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 129/179 (72%), Positives = 153/179 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
            G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPET+TGG ALKFY+SVR
Sbjct: 121 VGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETSTGGRALKFYASVR 179


>gi|229458622|gb|ACQ65969.1| recombinase A [Bradyrhizobium liaoningense]
 gi|229458659|gb|ACQ65987.1| recombinase A [Bradyrhizobium sp. SEMIA 6156]
          Length = 175

 Score =  275 bits (703), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 133/175 (76%), Positives = 157/175 (89%), Gaps = 1/175 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++
Sbjct: 121 DTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175


>gi|254055223|gb|ACT64211.1| RecA [Pseudomonas chlororaphis]
 gi|254055225|gb|ACT64212.1| RecA [Pseudomonas chlororaphis]
 gi|254055227|gb|ACT64213.1| RecA [Pseudomonas chlororaphis]
 gi|254055229|gb|ACT64214.1| RecA [Pseudomonas chlororaphis]
 gi|254055231|gb|ACT64215.1| RecA [Pseudomonas chlororaphis]
 gi|254055233|gb|ACT64216.1| RecA [Pseudomonas sp. C1Phz26]
          Length = 186

 Score =  275 bits (703), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 133/188 (70%), Positives = 159/188 (84%), Gaps = 2/188 (1%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           +R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL
Sbjct: 1   ERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTL 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS
Sbjct: 59  TLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
            A+D+IVIDSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+
Sbjct: 119 NAIDVIVIDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQI 178

Query: 204 RMKIGVMF 211
           RMKIGVMF
Sbjct: 179 RMKIGVMF 186


>gi|193795036|gb|ACF21654.1| RecA [Rhizobium leguminosarum]
          Length = 165

 Score =  275 bits (703), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 133/166 (80%), Positives = 154/166 (92%), Gaps = 1/166 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EI
Sbjct: 1   SKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           ALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARL
Sbjct: 120 ALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARL 165


>gi|229458665|gb|ACQ65990.1| recombinase A [Bradyrhizobium sp. SEMIA 6164]
          Length = 175

 Score =  275 bits (703), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 133/175 (76%), Positives = 157/175 (89%), Gaps = 1/175 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++
Sbjct: 121 DTLVRSGAVDVMVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175


>gi|158631790|gb|ABW75000.1| RecA [Rhizobium sp. CCBAU 83389]
          Length = 168

 Score =  275 bits (703), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 131/166 (78%), Positives = 153/166 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSLGLDIALG+GG P+GRI++    ESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 3   IETISTGSLGLDIALGVGGLPRGRIIDPCPKESSGKTTLALQTIAEAQKKGGICAFVDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE
Sbjct: 63  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIGVM
Sbjct: 123 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 168


>gi|29651969|gb|AAO87647.1| RecA [Listeria monocytogenes]
 gi|29651977|gb|AAO87651.1| RecA [Listeria monocytogenes]
 gi|29652007|gb|AAO87666.1| RecA [Listeria monocytogenes]
 gi|29652025|gb|AAO87675.1| RecA [Listeria monocytogenes]
 gi|29652116|gb|AAO87719.1| RecA [Listeria monocytogenes]
 gi|29652150|gb|AAO87736.1| RecA [Listeria monocytogenes]
 gi|29652170|gb|AAO87746.1| RecA [Listeria monocytogenes]
 gi|29652186|gb|AAO87754.1| RecA [Listeria monocytogenes]
 gi|29652194|gb|AAO87758.1| RecA [Listeria monocytogenes]
 gi|29652198|gb|AAO87760.1| RecA [Listeria monocytogenes]
 gi|29652226|gb|AAO87774.1| RecA [Listeria monocytogenes]
 gi|29652236|gb|AAO87779.1| RecA [Listeria monocytogenes]
 gi|29652262|gb|AAO87792.1| RecA [Listeria monocytogenes]
 gi|29652266|gb|AAO87794.1| RecA [Listeria monocytogenes]
 gi|29652282|gb|AAO87802.1| RecA [Listeria monocytogenes]
          Length = 195

 Score =  275 bits (703), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 131/197 (66%), Positives = 164/197 (83%), Gaps = 2/197 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MRMKIGVMFGSPETTTG 219
           +R K+GVMFG+PE T G
Sbjct: 179 IREKVGVMFGNPEITPG 195


>gi|68635358|emb|CAF21747.1| recombinase A [Lactobacillus amylovorus]
          Length = 200

 Score =  275 bits (703), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 125/196 (63%), Positives = 164/196 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  V +GSL LD A+G+GG+P+GRI+EIYGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   ISTVPTGSLALDAAIGVGGYPRGRIIEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIE
Sbjct: 62  NAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++   +QARLMSQALRKL+  IS++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GEMGDAHVRLQARLMSQALRKLSGPISKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIK 240
           FYS++RL++RR   IK
Sbjct: 182 FYSTIRLEVRRAEQIK 197


>gi|307343352|emb|CBJ18117.1| recombinase A [Micromonospora peucetia]
          Length = 179

 Score =  275 bits (703), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 129/179 (72%), Positives = 152/179 (84%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHALD  Y
Sbjct: 1   SIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHALDPDY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDALLVSQPDTGEQALEIVDMLVRSGAIDVIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
            G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALK Y+SVR
Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYASVR 179


>gi|300521777|gb|ADK26070.1| RecA protein [Vibrio communis]
 gi|300521779|gb|ADK26071.1| RecA protein [Vibrio communis]
          Length = 176

 Score =  275 bits (703), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 123/176 (69%), Positives = 155/176 (88%)

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSV
Sbjct: 1   GKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSV 60

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+P
Sbjct: 61  AALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNP 120

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           ETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 121 ETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 176


>gi|254055253|gb|ACT64226.1| RecA [Pseudomonas sp. CMR12a]
 gi|254055255|gb|ACT64227.1| RecA [Pseudomonas sp. CMR5c]
          Length = 186

 Score =  275 bits (703), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 132/188 (70%), Positives = 159/188 (84%), Gaps = 2/188 (1%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           +R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL
Sbjct: 1   ERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTL 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS
Sbjct: 59  TLSVIAQAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
            AVD+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+
Sbjct: 119 NAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQI 178

Query: 204 RMKIGVMF 211
           RMKIGVMF
Sbjct: 179 RMKIGVMF 186


>gi|325512831|gb|ADZ23604.1| RecA [Sinorhizobium fredii]
          Length = 154

 Score =  275 bits (703), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 130/154 (84%), Positives = 145/154 (94%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           LGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYA
Sbjct: 1   LGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           RKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLP
Sbjct: 61  RKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLP 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           GMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 121 GMQARLMSQALRKLTASISKSNCMVIFINQIRMK 154


>gi|325512789|gb|ADZ23583.1| RecA [Sinorhizobium fredii]
          Length = 154

 Score =  275 bits (703), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 130/154 (84%), Positives = 145/154 (94%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           GLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYAR
Sbjct: 1   GLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYAR 60

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
           KLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPG
Sbjct: 61  KLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPG 120

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           MQARLMSQALRKLT+SIS+S C+++FINQ+RMKI
Sbjct: 121 MQARLMSQALRKLTASISKSNCMVIFINQIRMKI 154


>gi|169883838|gb|ACA98015.1| recombination protein A [Bradyrhizobium elkanii]
          Length = 167

 Score =  275 bits (703), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 126/163 (77%), Positives = 152/163 (93%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHAL
Sbjct: 5   VSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHAL 64

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGV++  LLISQPDTGEQALEI D LVRSGA+D++V+DSVAAL P+AE+EG+M
Sbjct: 65  DPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALVPKAELEGEM 124

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIGVM
Sbjct: 125 GDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVM 167


>gi|110002955|emb|CAJ57764.1| recombinase A [Agrobacterium tumefaciens]
          Length = 166

 Score =  275 bits (702), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 135/167 (80%), Positives = 153/167 (91%), Gaps = 1/167 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARL
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARL 166


>gi|193795051|gb|ACF21659.1| RecA [Rhizobium tropici]
 gi|193795061|gb|ACF21662.1| RecA [Rhizobium tropici]
          Length = 165

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 134/166 (80%), Positives = 153/166 (92%), Gaps = 1/166 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKALEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI+EI
Sbjct: 1   SKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           ALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARL
Sbjct: 120 ALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARL 165


>gi|163960869|gb|ABY49979.1| recombination protein A [Rhizobium giardinii]
          Length = 159

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 131/156 (83%), Positives = 147/156 (94%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 4   IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIE
Sbjct: 64  HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           G+MG+SLPG+QARLMSQALRKLT+SIS+S C+++FI
Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISKSNCMVIFI 159


>gi|229458630|gb|ACQ65973.1| recombinase A [Bradyrhizobium liaoningense]
 gi|229458636|gb|ACQ65976.1| recombinase A [Bradyrhizobium sp. SEMIA 6014]
 gi|229458663|gb|ACQ65989.1| recombinase A [Bradyrhizobium sp. SEMIA 6163]
 gi|229458669|gb|ACQ65992.1| recombinase A [Bradyrhizobium sp. SEMIA 6186]
 gi|229458674|gb|ACQ65994.1| recombinase A [Bradyrhizobium yuanmingense]
          Length = 175

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 132/175 (75%), Positives = 157/175 (89%), Gaps = 1/175 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++
Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175


>gi|213012318|gb|ACJ38725.1| recombination-repair protein [Vibrio sp. R-11]
          Length = 179

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 125/179 (69%), Positives = 156/179 (87%)

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL L  IA +Q+ G TCA +DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI 
Sbjct: 1   SGKTTLTLELIAAAQREGKTCALIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEIC 60

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ 
Sbjct: 61  DALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMC 120

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK
Sbjct: 121 IFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 179


>gi|229458612|gb|ACQ65964.1| recombinase A [Bradyrhizobium sp. SEMIA 656]
 gi|229458672|gb|ACQ65993.1| recombinase A [Bradyrhizobium sp. SEMIA 6192]
 gi|229458676|gb|ACQ65995.1| recombinase A [Bradyrhizobium sp. SEMIA 6374]
          Length = 175

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 132/175 (75%), Positives = 157/175 (89%), Gaps = 1/175 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKSDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++
Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175


>gi|110003023|emb|CAJ57798.1| recombinase A [Bradyrhizobium elkanii]
          Length = 166

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 134/167 (80%), Positives = 153/167 (91%), Gaps = 1/167 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG+   + E I+ VS+GSL LDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERNFGKGSIMKLGANEKVVE-IDTVSTGSLSLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           QALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPGMQARL
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGMQARL 166


>gi|254055203|gb|ACT64201.1| RecA [Pseudomonas sp. R11-23-07]
 gi|254055205|gb|ACT64202.1| RecA [Pseudomonas sp. R11-45-07]
 gi|254055207|gb|ACT64203.1| RecA [Pseudomonas sp. R2-7-07]
 gi|254055209|gb|ACT64204.1| RecA [Pseudomonas sp. R4-35-07]
 gi|254055211|gb|ACT64205.1| RecA [Pseudomonas sp. R4-34-07]
 gi|254055213|gb|ACT64206.1| RecA [Pseudomonas sp. R14-24-07]
 gi|254055215|gb|ACT64207.1| RecA [Pseudomonas sp. R5-89-07]
 gi|254055217|gb|ACT64208.1| RecA [Pseudomonas sp. R5-90-07]
 gi|254055219|gb|ACT64209.1| RecA [Pseudomonas sp. L1-11-07]
 gi|254055221|gb|ACT64210.1| RecA [Pseudomonas fluorescens]
          Length = 186

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 132/188 (70%), Positives = 159/188 (84%), Gaps = 2/188 (1%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           +R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL
Sbjct: 1   ERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTL 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS
Sbjct: 59  TLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
            A+D+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+
Sbjct: 119 NAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQI 178

Query: 204 RMKIGVMF 211
           RMKIGVMF
Sbjct: 179 RMKIGVMF 186


>gi|325512767|gb|ADZ23572.1| RecA [Sinorhizobium sp. CCBAU 25426]
          Length = 154

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 129/154 (83%), Positives = 145/154 (94%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           LGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YA
Sbjct: 1   LGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           RKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLP
Sbjct: 61  RKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLP 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           GMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 121 GMQARLMSQALRKLTASISKSNCMVIFINQIRMK 154


>gi|68637227|emb|CAF21773.1| recombinase A [Lactobacillus jensenii]
          Length = 200

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 123/196 (62%), Positives = 166/196 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  + +GSL LD A+G+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   ISTIPTGSLALDAAIGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+
Sbjct: 62  NAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEID 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GEMGDSHVGLQARLMSQALRKLSGNINKTKTIALFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIK 240
           FYS++RL++RR   IK
Sbjct: 182 FYSTIRLEVRRAEQIK 197


>gi|229458608|gb|ACQ65962.1| recombinase A [Bradyrhizobium sp. SEMIA 560]
          Length = 175

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 133/175 (76%), Positives = 156/175 (89%), Gaps = 1/175 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT SI++
Sbjct: 121 DTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTDSINK 175


>gi|56181895|gb|AAV83928.1| RecA [Burkholderia cepacia]
          Length = 172

 Score =  274 bits (701), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 130/170 (76%), Positives = 152/170 (89%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 3   ENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFID 62

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AE
Sbjct: 63  AEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAE 122

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           IEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG
Sbjct: 123 IEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFG 172


>gi|163960879|gb|ABY49984.1| recombination protein A [Rhizobium sp. CCBAU 85046]
 gi|163960881|gb|ABY49985.1| recombination protein A [Rhizobium sp. CCBAU 85051]
          Length = 160

 Score =  274 bits (701), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 131/157 (83%), Positives = 147/157 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GSLGLDIALG+GG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 4   IETVSTGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIE
Sbjct: 64  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           G+MG+SLPG+QARLMSQALRKLT+SISRS  +++FI 
Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFIT 160


>gi|307343404|emb|CBJ18143.1| recombinase A [Micromonospora sp. GUI63]
          Length = 179

 Score =  274 bits (701), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 129/179 (72%), Positives = 152/179 (84%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
            G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALK Y+SVR
Sbjct: 121 VGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYASVR 179


>gi|290889085|gb|ADD69892.1| recombination protein A [Rhizobium alamii]
          Length = 157

 Score =  274 bits (701), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 129/157 (82%), Positives = 148/157 (94%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD
Sbjct: 1   STGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG
Sbjct: 61  PVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RM
Sbjct: 121 DSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRM 157


>gi|29651991|gb|AAO87658.1| RecA [Listeria monocytogenes]
 gi|29652094|gb|AAO87709.1| RecA [Listeria monocytogenes]
          Length = 194

 Score =  274 bits (701), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 130/194 (67%), Positives = 163/194 (84%), Gaps = 2/194 (1%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKT
Sbjct: 2   QIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LV
Sbjct: 60  TVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FIN
Sbjct: 120 RSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFIN 179

Query: 202 QMRMKIGVMFGSPE 215
           Q+R K+GVMFG+PE
Sbjct: 180 QIREKVGVMFGNPE 193


>gi|163960871|gb|ABY49980.1| recombination protein A [Rhizobium mongolense]
          Length = 160

 Score =  274 bits (701), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 129/157 (82%), Positives = 147/157 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GSL LDIALGIGG PKGR++EIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 4   IETVSTGSLSLDIALGIGGLPKGRVIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAAL PRAEIE
Sbjct: 64  HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALVPRAEIE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           G+MG+SLPG+QARLMSQALRKLT+SIS+S C+++FIN
Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISKSNCMVIFIN 160


>gi|291246127|gb|ADD85188.1| RecA [Borrelia recurrentis]
          Length = 202

 Score =  274 bits (701), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 127/192 (66%), Positives = 166/192 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E + SG + LD A+GIGG+P+GR+VEI+GPESSGKTTL L  IA+ QKTGG  AF+DAE
Sbjct: 4   LESIPSGFILLDEAIGIGGYPRGRVVEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YAR LGV++  L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAAL P+AEI+
Sbjct: 64  HALDPVYARALGVNINELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALMPQAEID 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMS+ALRK+T+ +S+S   ++FINQ+RMKIG++FGSPETTTGGNALK
Sbjct: 124 GEMGDTQIGLQARLMSKALRKITAILSKSNACIMFINQIRMKIGLVFGSPETTTGGNALK 183

Query: 225 FYSSVRLDIRRV 236
           FYSS+RL++R+V
Sbjct: 184 FYSSLRLEVRKV 195


>gi|291246101|gb|ADD85177.1| RecA [Borrelia recurrentis]
          Length = 205

 Score =  274 bits (701), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 127/192 (66%), Positives = 166/192 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E + SG + LD A+GIGG+P+GR+VEI+GPESSGKTTL L  IA+ QKTGG  AF+DAE
Sbjct: 12  LESIPSGFILLDEAIGIGGYPRGRVVEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAE 71

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YAR LGV++  L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAAL P+AEI+
Sbjct: 72  HALDPVYARALGVNINELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALMPQAEID 131

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMS+ALRK+T+ +S+S   ++FINQ+RMKIG++FGSPETTTGGNALK
Sbjct: 132 GEMGDTQIGLQARLMSKALRKITAILSKSNACIMFINQIRMKIGLVFGSPETTTGGNALK 191

Query: 225 FYSSVRLDIRRV 236
           FYSS+RL++R+V
Sbjct: 192 FYSSLRLEVRKV 203


>gi|193090213|gb|ACF15278.1| recombination protein A [Sinorhizobium sp. CCBAU 65682]
          Length = 166

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 131/167 (78%), Positives = 153/167 (91%), Gaps = 1/167 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LG + SI E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A+
Sbjct: 1   SVMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V
Sbjct: 60  AQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           +DSVAAL PRAEIEG+MG++LPGMQARLMSQALRKLT+SIS+S C++
Sbjct: 120 VDSVAALVPRAEIEGEMGDNLPGMQARLMSQALRKLTASISKSNCMV 166


>gi|158631762|gb|ABW74986.1| RecA [Bradyrhizobium elkanii]
          Length = 168

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 126/164 (76%), Positives = 151/164 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE
Sbjct: 5   VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 64

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 65  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 124

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIG
Sbjct: 125 GEMGDALPGLQARLMSQALRKLTASINKSHTMVIFINQIRMKIG 168


>gi|291246113|gb|ADD85181.1| RecA [Borrelia recurrentis]
 gi|291246125|gb|ADD85187.1| RecA [Borrelia recurrentis]
          Length = 201

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 127/192 (66%), Positives = 166/192 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E + SG + LD A+GIGG+P+GR+VEI+GPESSGKTTL L  IA+ QKTGG  AF+DAE
Sbjct: 4   LESIPSGFILLDEAIGIGGYPRGRVVEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YAR LGV++  L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAAL P+AEI+
Sbjct: 64  HALDPVYARALGVNINELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALMPQAEID 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMS+ALRK+T+ +S+S   ++FINQ+RMKIG++FGSPETTTGGNALK
Sbjct: 124 GEMGDTQIGLQARLMSKALRKITAILSKSNACIMFINQIRMKIGLVFGSPETTTGGNALK 183

Query: 225 FYSSVRLDIRRV 236
           FYSS+RL++R+V
Sbjct: 184 FYSSLRLEVRKV 195


>gi|254055235|gb|ACT64217.1| RecA [Pseudomonas aeruginosa]
 gi|254055237|gb|ACT64218.1| RecA [Pseudomonas aeruginosa]
 gi|254055239|gb|ACT64219.1| RecA [Pseudomonas aeruginosa]
 gi|254055241|gb|ACT64220.1| RecA [Pseudomonas aeruginosa]
          Length = 186

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 131/188 (69%), Positives = 160/188 (85%), Gaps = 2/188 (1%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           +R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL
Sbjct: 1   ERQFGKGAVMRMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTL 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS
Sbjct: 59  TLSVIAEAQKQGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
            AVD+I++DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T +I  + C+++FINQ+
Sbjct: 119 NAVDVIIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNIKNANCLVIFINQI 178

Query: 204 RMKIGVMF 211
           RMKIGVMF
Sbjct: 179 RMKIGVMF 186


>gi|160947830|gb|ABX54724.1| RecA protein [Mesorhizobium huakuii]
          Length = 166

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 130/167 (77%), Positives = 153/167 (91%), Gaps = 1/167 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTT
Sbjct: 1   IERSFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVR
Sbjct: 60  LALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           SGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 120 SGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 166


>gi|29652039|gb|AAO87682.1| RecA [Listeria monocytogenes]
 gi|29652112|gb|AAO87717.1| RecA [Listeria monocytogenes]
 gi|29652138|gb|AAO87730.1| RecA [Listeria monocytogenes]
 gi|29652208|gb|AAO87765.1| RecA [Listeria monocytogenes]
 gi|29652250|gb|AAO87786.1| RecA [Listeria monocytogenes]
          Length = 193

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 130/195 (66%), Positives = 163/195 (83%), Gaps = 2/195 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MRMKIGVMFGSPETT 217
           +R K+GVMFG+PE T
Sbjct: 179 IREKVGVMFGNPEIT 193


>gi|229458604|gb|ACQ65960.1| recombinase A [Bradyrhizobium japonicum]
 gi|229458606|gb|ACQ65961.1| recombinase A [Bradyrhizobium japonicum]
 gi|229458628|gb|ACQ65972.1| recombinase A [Bradyrhizobium japonicum]
 gi|229458632|gb|ACQ65974.1| recombinase A [Bradyrhizobium japonicum SEMIA 5079]
 gi|229458634|gb|ACQ65975.1| recombinase A [Bradyrhizobium sp. SEMIA 5080]
 gi|229458642|gb|ACQ65979.1| recombinase A [Bradyrhizobium sp. SEMIA 6059]
          Length = 175

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 130/175 (74%), Positives = 157/175 (89%), Gaps = 1/175 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG      + +E VSSGSLGLDIALGIGG PKGR+VEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++
Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175


>gi|207080803|gb|ACI22745.1| RecA [Rhizobium sp. J3-41]
          Length = 162

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 132/163 (80%), Positives = 151/163 (92%), Gaps = 1/163 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG+  S+ E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL 
Sbjct: 1   FGKGSVMKLGANESVVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG CAFVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+
Sbjct: 60  TIAEAQKKGGICAFVDAEHALDPIYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           D++V+DSVAALTPRAEIEG+MG+SLPGMQARLMSQALRKLT+S
Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 162


>gi|158631788|gb|ABW74999.1| RecA [Rhizobium sp. CCBAU 83514]
          Length = 167

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 130/164 (79%), Positives = 151/164 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSLGLDIALG+GG P+GRI+  Y  ESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 1   IETISTGSLGLDIALGVGGLPRGRIINPYRKESSGKTTLALQTIAEAQKKGGICAFVDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE
Sbjct: 61  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIG
Sbjct: 121 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIG 164


>gi|5002513|emb|CAB44332.1| RecA protein [Acidothermus cellulolyticus 11B]
          Length = 186

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 128/185 (69%), Positives = 156/185 (84%)

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           +SSGKTTLALH +A +Q+ GG  AF+DAEHALD  YA+KLGVD  NLL+SQPDTGEQALE
Sbjct: 1   DSSGKTTLALHAVANAQRAGGIAAFIDAEHALDPEYAKKLGVDTDNLLVSQPDTGEQALE 60

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L+RSGA+D++VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++S S  
Sbjct: 61  IADTLIRSGAIDVVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGALSHSGT 120

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
             +FINQ+R K+GV FGSPETTTGG ALKFY+S+RLD+RR+ +IK+     GN+TRVKVV
Sbjct: 121 TAIFINQLREKVGVFFGSPETTTGGKALKFYASIRLDVRRIDTIKEGQEAIGNRTRVKVV 180

Query: 256 KNKMA 260
           KNK+A
Sbjct: 181 KNKVA 185


>gi|29651999|gb|AAO87662.1| RecA [Listeria monocytogenes]
 gi|29652101|gb|AAO87712.1| RecA [Listeria monocytogenes]
 gi|29652104|gb|AAO87713.1| RecA [Listeria monocytogenes]
 gi|29652118|gb|AAO87720.1| RecA [Listeria monocytogenes]
 gi|29652142|gb|AAO87732.1| RecA [Listeria monocytogenes]
 gi|29652152|gb|AAO87737.1| RecA [Listeria monocytogenes]
 gi|29652168|gb|AAO87745.1| RecA [Listeria monocytogenes]
 gi|29652172|gb|AAO87747.1| RecA [Listeria monocytogenes]
 gi|29652206|gb|AAO87764.1| RecA [Listeria monocytogenes]
 gi|29652224|gb|AAO87773.1| RecA [Listeria monocytogenes]
 gi|29652228|gb|AAO87775.1| RecA [Listeria monocytogenes]
 gi|29652246|gb|AAO87784.1| RecA [Listeria monocytogenes]
          Length = 194

 Score =  273 bits (699), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 130/195 (66%), Positives = 163/195 (83%), Gaps = 2/195 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MRMKIGVMFGSPETT 217
           +R K+GVMFG+PE T
Sbjct: 179 IREKVGVMFGNPEIT 193


>gi|307343348|emb|CBJ18115.1| recombinase A [Micromonospora pallida]
          Length = 178

 Score =  273 bits (699), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 128/178 (71%), Positives = 152/178 (85%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           + LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA
Sbjct: 1   IALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           + LGVD   LL+SQPDTGEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  
Sbjct: 61  KALGVDTDALLVSQPDTGEQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHV 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
           G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR
Sbjct: 121 GLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVR 178


>gi|213950706|gb|ACJ54598.1| recombination protein A [Sinorhizobium fredii]
          Length = 162

 Score =  273 bits (699), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 135/163 (82%), Positives = 150/163 (92%), Gaps = 1/163 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TI
Sbjct: 1   KGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 60  AEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           +V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S S
Sbjct: 120 LVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASTS 162


>gi|89143239|emb|CAJ57514.1| recombinase A [Microbacterium dextranolyticum]
          Length = 185

 Score =  273 bits (699), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 130/185 (70%), Positives = 154/185 (83%)

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTL LH IA  Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI D
Sbjct: 1   GKTTLTLHAIANVQRAGGIAAFIDAEHALDPDYAQKLGVDIDQLLVSQPDTGEQALEIAD 60

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           MLVRSGA+D++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  ++++   ++
Sbjct: 61  MLVRSGAIDLVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTGTTMI 120

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNK
Sbjct: 121 FINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNK 180

Query: 259 MASPF 263
           MA PF
Sbjct: 181 MAPPF 185


>gi|163960894|gb|ABY49991.1| recombination protein A [Mesorhizobium loti]
 gi|163960896|gb|ABY49992.1| recombination protein A [Mesorhizobium loti]
          Length = 160

 Score =  273 bits (699), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 128/157 (81%), Positives = 147/157 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAE
Sbjct: 4   IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIE
Sbjct: 64  HALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           G+MG+SLPG+QARLMSQALRKLT+SISRS  +++FIN
Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFIN 160


>gi|289812948|gb|ADD20934.1| recombinase A [Bradyrhizobium liaoningense]
          Length = 162

 Score =  273 bits (699), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 128/162 (79%), Positives = 150/162 (92%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEH
Sbjct: 1   EAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG
Sbjct: 61  ALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 162


>gi|289812944|gb|ADD20932.1| recombinase A [Bradyrhizobium elkanii]
          Length = 163

 Score =  273 bits (699), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 127/163 (77%), Positives = 150/163 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE
Sbjct: 1   VETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E
Sbjct: 61  HALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVRSGAVDVLVIDSVAALVPKAELE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 163


>gi|163960859|gb|ABY49974.1| recombination protein A [Rhizobium leguminosarum]
 gi|163960861|gb|ABY49975.1| recombination protein A [Rhizobium leguminosarum]
          Length = 160

 Score =  273 bits (699), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 128/157 (81%), Positives = 148/157 (94%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 4   IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE
Sbjct: 64  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           G+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FIN
Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFIN 160


>gi|262064668|gb|ACY07568.1| recombinase A [Rhizobium sp. LCS0411]
          Length = 170

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 132/170 (77%), Positives = 154/170 (90%), Gaps = 1/170 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKT
Sbjct: 1   QIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TLAL TIA++QK GG CA VDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LV
Sbjct: 60  TLALQTIAEAQKKGGICAXVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           RSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQ  RKL +SIS
Sbjct: 120 RSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQVXRKLXASIS 169


>gi|163960890|gb|ABY49989.1| recombination protein A [Sinorhizobium meliloti]
          Length = 158

 Score =  273 bits (698), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 131/155 (84%), Positives = 145/155 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAE
Sbjct: 4   IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VIDSVAAL PRAEIE
Sbjct: 64  HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVIDSVAALVPRAEIE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           G+MG+SLPGMQARLMSQALRKLT+SIS+S C+++F
Sbjct: 124 GEMGDSLPGMQARLMSQALRKLTASISKSNCMVIF 158


>gi|163960877|gb|ABY49983.1| recombination protein A [Rhizobium sp. CCBAU 85045]
          Length = 160

 Score =  273 bits (698), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 130/157 (82%), Positives = 147/157 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 4   IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE
Sbjct: 64  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           G+MG+SLPG+QARLMSQALRKLT+SIS+SK +++FI 
Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISKSKTMVIFIT 160


>gi|229458616|gb|ACQ65966.1| recombinase A [Bradyrhizobium canariense]
          Length = 175

 Score =  273 bits (698), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 131/175 (74%), Positives = 156/175 (89%), Gaps = 1/175 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG      + +E VSSGSLGLDIALGIGG PKGR+VEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++
Sbjct: 121 DTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175


>gi|229458614|gb|ACQ65965.1| recombinase A [Bradyrhizobium sp. SEMIA 695]
 gi|229458650|gb|ACQ65983.1| recombinase A [Bradyrhizobium sp. SEMIA 6099]
 gi|229458657|gb|ACQ65986.1| recombinase A [Bradyrhizobium sp. SEMIA 6152]
 gi|229458661|gb|ACQ65988.1| recombinase A [Bradyrhizobium sp. SEMIA 6160]
          Length = 175

 Score =  273 bits (698), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 131/175 (74%), Positives = 156/175 (89%), Gaps = 1/175 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG      + +E VSSGSLGLDIALG+GG PKGRIVEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRIVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIA 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++
Sbjct: 121 DTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175


>gi|29652216|gb|AAO87769.1| RecA [Listeria monocytogenes]
          Length = 193

 Score =  273 bits (698), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 130/193 (67%), Positives = 161/193 (83%), Gaps = 2/193 (1%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH
Sbjct: 3   FGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALH 60

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRSGAV
Sbjct: 61  AIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAV 120

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+R K
Sbjct: 121 DMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREK 180

Query: 207 IGVMFGSPETTTG 219
           +GVMFG+PE T G
Sbjct: 181 VGVMFGNPEITPG 193


>gi|158905833|gb|ABW82566.1| RecA [Bradyrhizobiaceae bacterium S9]
 gi|158905835|gb|ABW82567.1| RecA [Bradyrhizobiaceae bacterium S7]
 gi|289812938|gb|ADD20929.1| recombinase A [Bradyrhizobium yuanmingense]
 gi|289812953|gb|ADD20936.1| recombinase A [Bradyrhizobium japonicum]
 gi|296516852|emb|CBM35913.1| recombination protein A [Bradyrhizobium sp. CAH10]
          Length = 162

 Score =  273 bits (698), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 127/162 (78%), Positives = 150/162 (92%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEH
Sbjct: 1   EAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG
Sbjct: 61  ALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 162


>gi|289812946|gb|ADD20933.1| recombinase A [Bradyrhizobium japonicum]
          Length = 163

 Score =  273 bits (698), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 127/162 (78%), Positives = 150/162 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 1   IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 61  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 162


>gi|268308921|gb|ACY95421.1| recombination protein A [Rhizobium sp. CCBAU 45111]
          Length = 155

 Score =  273 bits (698), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 130/155 (83%), Positives = 146/155 (94%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +
Sbjct: 1   GSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPV 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+S
Sbjct: 61  YARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDS 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           LPG+QARLMSQALRKLT+SIS+S  +++FINQ+RM
Sbjct: 121 LPGLQARLMSQALRKLTASISKSNTMVIFINQIRM 155


>gi|325305318|gb|ADZ06007.1| RecA [Aeromonas veronii bv. veronii]
 gi|325305320|gb|ADZ06008.1| RecA [Aeromonas allosaccharophila]
          Length = 166

 Score =  273 bits (697), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 127/165 (76%), Positives = 150/165 (90%)

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSV
Sbjct: 2   GKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSV 61

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSP
Sbjct: 62  AALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSP 121

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           ETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+TRVKVVKNK+
Sbjct: 122 ETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNETRVKVVKNKV 166


>gi|207080811|gb|ACI22749.1| RecA [Rhizobium sp. J3-AN56]
          Length = 162

 Score =  273 bits (697), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 130/163 (79%), Positives = 151/163 (92%), Gaps = 1/163 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG+  S+ E +E VS+GSL LDIALGIGG PKGRI+E+YGPESSGKTTLAL 
Sbjct: 1   FGKGSVMKLGANESVVE-VETVSTGSLSLDIALGIGGLPKGRIIEVYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+
Sbjct: 60  TIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           D++V+DSVAALTPRAEIEG+MG+SLPGMQARLMSQALRKLT+S
Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 162


>gi|158905757|gb|ABW82534.1| RecA [Shinella kummerowiae]
          Length = 161

 Score =  273 bits (697), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 134/161 (83%), Positives = 149/161 (92%), Gaps = 1/161 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG + SI E  E VS+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTLAL TIA+SQ
Sbjct: 1   MKLGGKDSIIE-TETVSTGSLGLDVALGIGGLPKGRIIEIYGPESSGKTTLALQTIAESQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SVAALTPRAEIEG+MGESLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 SVAALTPRAEIEGEMGESLPGLQARLMSQALRKLTASISKS 160


>gi|148828448|gb|ABR13875.1| RecA [Dickeya sp. 980]
          Length = 171

 Score =  273 bits (697), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 127/171 (74%), Positives = 151/171 (88%)

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQ
Sbjct: 1   GRIVEIYGPESSGKTTLTLQVIAAAQRGGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQ 60

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL
Sbjct: 61  PDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 120

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
             ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G
Sbjct: 121 AGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIG 171


>gi|229458667|gb|ACQ65991.1| recombinase A [Bradyrhizobium sp. SEMIA 6179]
          Length = 175

 Score =  273 bits (697), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 130/175 (74%), Positives = 156/175 (89%), Gaps = 1/175 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG      + +E VSSGSLGLDIALGIGG PKGR+VEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++
Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175


>gi|229458644|gb|ACQ65980.1| recombinase A [Bradyrhizobium sp. SEMIA 6069]
 gi|229458648|gb|ACQ65982.1| recombinase A [Bradyrhizobium sp. SEMIA 6093]
          Length = 175

 Score =  273 bits (697), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 130/175 (74%), Positives = 156/175 (89%), Gaps = 1/175 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG      + +E VSSGSLGLDIALG+GG PKGR+VEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRVVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++
Sbjct: 121 DTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175


>gi|68637468|emb|CAF21826.1| recombinase A [Lactococcus lactis subsp. lactis]
          Length = 200

 Score =  273 bits (697), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 131/196 (66%), Positives = 162/196 (82%), Gaps = 2/196 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           + VVSSGSL LDIALG GG+PKGRIVEIYGPESSGKTT+ALH +A  QK GG  AF+DAE
Sbjct: 2   VSVVSSGSLALDIALGAGGYPKGRIVEIYGPESSGKTTVALHAVAAVQKEGGIAAFIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD  YA+ LGV++  LL+SQPD GEQ L+I + L+ SGAVD++VIDSVAAL P+AEI+
Sbjct: 62  NALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAALVPKAEID 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G++G+S  G+QAR+MSQA+RKL   I+++K   +FINQ+R K+GVMFGSPETT GG ALK
Sbjct: 122 GEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIK 240
           FY+SVRLD+R  GS K
Sbjct: 182 FYASVRLDVR--GSTK 195


>gi|51235251|gb|AAT98470.1| recombination protein A [Rhizobium huautlense]
 gi|51235259|gb|AAT98474.1| recombination protein A [Rhizobium huautlense]
 gi|51235261|gb|AAT98475.1| recombination protein A [Rhizobium huautlense]
          Length = 160

 Score =  273 bits (697), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 135/161 (83%), Positives = 149/161 (92%), Gaps = 1/161 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  +I E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRS 160


>gi|193090231|gb|ACF15287.1| recombination protein A [Rhizobium leguminosarum]
          Length = 166

 Score =  273 bits (697), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 130/167 (77%), Positives = 154/167 (92%), Gaps = 1/167 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA+
Sbjct: 1   SVMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V
Sbjct: 60  AQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           +DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S  ++
Sbjct: 120 VDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNTMV 166


>gi|62548803|gb|AAX86853.1| RecA [Rhizobium etli bv. phaseoli]
          Length = 160

 Score =  273 bits (697), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 132/161 (81%), Positives = 150/161 (93%), Gaps = 1/161 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  ++ E IE +S+GSLGLDIALG+GG PKGRI+EIYGPESSGKTTLAL TIA+SQ
Sbjct: 1   MKLGSNENVIE-IETISTGSLGLDIALGVGGLPKGRIIEIYGPESSGKTTLALQTIAESQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 160


>gi|261419499|ref|YP_003253181.1| recA protein [Geobacillus sp. Y412MC61]
 gi|319766316|ref|YP_004131817.1| recA protein [Geobacillus sp. Y412MC52]
 gi|261375956|gb|ACX78699.1| recA protein [Geobacillus sp. Y412MC61]
 gi|317111182|gb|ADU93674.1| recA protein [Geobacillus sp. Y412MC52]
          Length = 277

 Score =  273 bits (697), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 130/214 (60%), Positives = 170/214 (79%)

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           +LEI + LVRSGAVDIIVIDSVAAL P+AEIEG+MG++  G+QARLMSQALRKL+ +I++
Sbjct: 54  SLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLSGAINK 113

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           SK I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRL++RR   IK  + + GN+T++
Sbjct: 114 SKTIAIFINQIREKVGVMFGNPETTPGGRALKFYASVRLEVRRAEQIKQGNDMVGNKTKI 173

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK+A PFK  + DIMYGEGIS  GE++D+  +  IV KSG+W+S+K +RLGQGREN
Sbjct: 174 KVVKNKVAPPFKTADVDIMYGEGISREGEILDMASELDIVQKSGSWYSYKDERLGQGREN 233

Query: 313 SKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           +K FL+EN  IA+ I   +RQ+ G+  +    EP
Sbjct: 234 AKQFLKENPHIADEIARAIRQHYGIDVEEGTSEP 267


>gi|207080809|gb|ACI22748.1| RecA [Rhizobium sp. J3-N43]
          Length = 161

 Score =  272 bits (696), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 132/162 (81%), Positives = 150/162 (92%), Gaps = 1/162 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG+  S+ E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL 
Sbjct: 1   FGKGSIMKLGANESVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAV
Sbjct: 60  TIAEAQKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+
Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTA 161


>gi|68637325|emb|CAF21796.1| recombinase A [Lactobacillus rhamnosus]
          Length = 200

 Score =  272 bits (696), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 127/197 (64%), Positives = 164/197 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +  VSSGSL +D ALG+GG P+GRIVEIYGPESSGKTT+ALH +A  Q+ GGT A++DAE
Sbjct: 2   VSAVSSGSLAIDDALGVGGLPRGRIVEIYGPESSGKTTVALHAVAMVQQHGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGV++  LL+SQPDTGEQ LEI D LV SGA+DI+V+DSVAAL PRAEIE
Sbjct: 62  NAMDPKYAAALGVNIDELLLSQPDTGEQGLEIADELVASGAIDILVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG++  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+G++FG+PE T GG ALK
Sbjct: 122 GDMGDAHVGLQARLMSQALRKLSGAINKTKTIALFINQIREKVGIVFGNPEITPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKD 241
           FY++VR+++RR   IK+
Sbjct: 182 FYATVRMEVRRSEQIKN 198


>gi|163960885|gb|ABY49987.1| recombination protein A [Bradyrhizobium sp. CCBAU 85058]
          Length = 158

 Score =  272 bits (696), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 127/157 (80%), Positives = 147/157 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GSLGLDIALG+GG P+GR++EIYGPESSGKTTLALHTIA++QK GG CAFVDAE
Sbjct: 2   IETVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTTLALHTIAEAQKKGGVCAFVDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV+L +LLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIE
Sbjct: 62  HALDPVYARKLGVNLDDLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           G+MG+  PG+QARLMSQALRKLT+SISRS C+++FIN
Sbjct: 122 GEMGDVQPGLQARLMSQALRKLTASISRSNCMVIFIN 158


>gi|207080821|gb|ACI22754.1| RecA [Rhizobium sp. J3-AN18]
          Length = 161

 Score =  272 bits (696), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 131/162 (80%), Positives = 150/162 (92%), Gaps = 1/162 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG+  S+ E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL 
Sbjct: 1   FGKGSVMKLGANESVVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG CAFVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+
Sbjct: 60  TIAEAQKKGGICAFVDAEHALDPIYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           D++V+DSVAALTPRAEIEG+MG+SLPGMQARLMSQALRKLT+
Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRKLTA 161


>gi|307343350|emb|CBJ18116.1| recombinase A [Micromonospora pattaloongensis]
          Length = 177

 Score =  272 bits (696), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 125/176 (71%), Positives = 152/176 (86%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LD+ALG+GG P+GR++E+YGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA+ 
Sbjct: 2   LDVALGVGGLPRGRVIEVYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEYAKA 61

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           LGVD  ++L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+
Sbjct: 62  LGVDTDSMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGL 121

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
           QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR
Sbjct: 122 QARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVR 177


>gi|262064666|gb|ACY07567.1| recombinase A [Rhizobium leguminosarum]
          Length = 165

 Score =  272 bits (696), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 132/166 (79%), Positives = 152/166 (91%), Gaps = 1/166 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI   +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKT
Sbjct: 1   QIDGSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LV
Sbjct: 60  TLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           RSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT
Sbjct: 120 RSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLT 165


>gi|229458610|gb|ACQ65963.1| recombinase A [Bradyrhizobium elkanii]
 gi|229458618|gb|ACQ65967.1| recombinase A [Bradyrhizobium elkanii]
 gi|229458620|gb|ACQ65968.1| recombinase A [Bradyrhizobium elkanii]
 gi|229458624|gb|ACQ65970.1| recombinase A [Bradyrhizobium elkanii]
 gi|229458626|gb|ACQ65971.1| recombinase A [Bradyrhizobium elkanii]
 gi|229458638|gb|ACQ65977.1| recombinase A [Bradyrhizobium sp. SEMIA 6028]
 gi|229458640|gb|ACQ65978.1| recombinase A [Bradyrhizobium sp. SEMIA 6053]
 gi|229458652|gb|ACQ65984.1| recombinase A [Bradyrhizobium sp. SEMIA 6101]
          Length = 175

 Score =  272 bits (696), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 129/175 (73%), Positives = 156/175 (89%), Gaps = 1/175 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG      + +E VSSGSLGLDIALG+GG PKGR+VEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRVVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++
Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175


>gi|148828450|gb|ABR13876.1| RecA [Dickeya sp. 2187]
          Length = 171

 Score =  272 bits (696), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 126/171 (73%), Positives = 151/171 (88%)

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQ
Sbjct: 1   GRIVEIYGPESSGKTTLTLQVIAAAQRGGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQ 60

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL
Sbjct: 61  PDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 120

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
             ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G
Sbjct: 121 AGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIG 171


>gi|62548783|gb|AAX86843.1| RecA [Rhizobium galegae]
 gi|62548791|gb|AAX86847.1| RecA [Rhizobium galegae]
          Length = 160

 Score =  272 bits (696), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 135/161 (83%), Positives = 149/161 (92%), Gaps = 1/161 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG+  SI E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGANESIVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++VID
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 160


>gi|322510295|gb|ADX05533.1| recombination protein A [Bradyrhizobium japonicum]
          Length = 163

 Score =  272 bits (695), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 125/162 (77%), Positives = 150/162 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 1   VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 61  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 162


>gi|289812910|gb|ADD20916.1| recombinase A [Bradyrhizobium sp. CCBAU 23005]
          Length = 165

 Score =  272 bits (695), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 125/163 (76%), Positives = 150/163 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE
Sbjct: 3   VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 63  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 123 GEMGDALPGLQARLMSQALRKLTASINKSHTMVIFINQIRMKI 165


>gi|62548785|gb|AAX86844.1| RecA [Rhizobium galegae]
          Length = 160

 Score =  272 bits (695), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 135/161 (83%), Positives = 149/161 (92%), Gaps = 1/161 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  +I E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++VID
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 160


>gi|29652248|gb|AAO87785.1| RecA [Listeria monocytogenes]
 gi|29652300|gb|AAO87811.1| RecA [Listeria monocytogenes]
          Length = 192

 Score =  272 bits (695), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 129/193 (66%), Positives = 162/193 (83%), Gaps = 2/193 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MRMKIGVMFGSPE 215
           +R K+GVMFG+PE
Sbjct: 179 IREKVGVMFGNPE 191


>gi|29652078|gb|AAO87701.1| RecA [Listeria monocytogenes]
 gi|29652106|gb|AAO87714.1| RecA [Listeria monocytogenes]
          Length = 191

 Score =  272 bits (695), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 129/193 (66%), Positives = 162/193 (83%), Gaps = 2/193 (1%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKT
Sbjct: 1   QIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKT 58

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LV
Sbjct: 59  TVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALV 118

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FIN
Sbjct: 119 RSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFIN 178

Query: 202 QMRMKIGVMFGSP 214
           Q+R K+GVMFG+P
Sbjct: 179 QIREKVGVMFGNP 191


>gi|229458646|gb|ACQ65981.1| recombinase A [Bradyrhizobium sp. SEMIA 6077]
          Length = 175

 Score =  272 bits (695), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 132/175 (75%), Positives = 156/175 (89%), Gaps = 1/175 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKSDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTEAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++
Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175


>gi|29651975|gb|AAO87650.1| RecA [Listeria monocytogenes]
 gi|29651983|gb|AAO87654.1| RecA [Listeria monocytogenes]
 gi|29651989|gb|AAO87657.1| RecA [Listeria monocytogenes]
 gi|29652021|gb|AAO87673.1| RecA [Listeria monocytogenes]
 gi|29652041|gb|AAO87683.1| RecA [Listeria monocytogenes]
 gi|29652082|gb|AAO87703.1| RecA [Listeria monocytogenes]
 gi|29652098|gb|AAO87711.1| RecA [Listeria monocytogenes]
 gi|29652108|gb|AAO87715.1| RecA [Listeria monocytogenes]
 gi|29652130|gb|AAO87726.1| RecA [Listeria monocytogenes]
 gi|29652144|gb|AAO87733.1| RecA [Listeria monocytogenes]
 gi|29652148|gb|AAO87735.1| RecA [Listeria monocytogenes]
 gi|29652156|gb|AAO87739.1| RecA [Listeria monocytogenes]
 gi|29652200|gb|AAO87761.1| RecA [Listeria monocytogenes]
 gi|29652222|gb|AAO87772.1| RecA [Listeria monocytogenes]
 gi|29652258|gb|AAO87790.1| RecA [Listeria monocytogenes]
 gi|29652286|gb|AAO87804.1| RecA [Listeria monocytogenes]
 gi|29652304|gb|AAO87813.1| RecA [Listeria monocytogenes]
          Length = 191

 Score =  272 bits (695), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 129/193 (66%), Positives = 162/193 (83%), Gaps = 2/193 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MRMKIGVMFGSPE 215
           +R K+GVMFG+PE
Sbjct: 179 IREKVGVMFGNPE 191


>gi|325512821|gb|ADZ23599.1| RecA [Sinorhizobium fredii]
          Length = 160

 Score =  272 bits (695), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 134/161 (83%), Positives = 149/161 (92%), Gaps = 1/161 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 160


>gi|289812931|gb|ADD20926.1| recombinase A [Bradyrhizobium elkanii]
          Length = 164

 Score =  272 bits (695), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 125/163 (76%), Positives = 150/163 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE
Sbjct: 2   VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 62  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 122 GEMGDALPGLQARLMSQALRKLTASINKSHTMVIFINQIRMKI 164


>gi|289812915|gb|ADD20918.1| recombinase A [Bradyrhizobium japonicum]
          Length = 164

 Score =  272 bits (695), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 125/162 (77%), Positives = 150/162 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 3   VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 63  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 123 GEMGDALPGLQARLMSQALRKLTASINKSHTMVIFINQIRMK 164


>gi|298566916|gb|ADI86534.1| recombination protein A [Bradyrhizobium japonicum]
          Length = 162

 Score =  272 bits (695), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 125/162 (77%), Positives = 150/162 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 1   VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 61  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 162


>gi|289812942|gb|ADD20931.1| recombinase A [Bradyrhizobium sp. CCBAU 65884]
          Length = 162

 Score =  272 bits (695), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 127/161 (78%), Positives = 149/161 (92%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEH
Sbjct: 1   EAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG
Sbjct: 61  ALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           +MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 161


>gi|163960900|gb|ABY49994.1| recombination protein A [Mesorhizobium mediterraneum]
          Length = 160

 Score =  272 bits (695), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 127/157 (80%), Positives = 146/157 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAE
Sbjct: 4   IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLIS PDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIE
Sbjct: 64  HALDPVYARKLGVDLENLLISHPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           G+MG+SLPG+QARLMSQALRKLT+SISRS  +++FIN
Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFIN 160


>gi|87303736|ref|ZP_01086496.1| RecA DNA recombination protein [Synechococcus sp. WH 5701]
 gi|87281729|gb|EAQ73701.1| RecA DNA recombination protein [Synechococcus sp. WH 5701]
          Length = 249

 Score =  272 bits (695), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 125/211 (59%), Positives = 168/211 (79%)

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           ++SQPDTGE ALEI D LVRS AVDI+VIDSVAALTPR+EIEG+MG+   G QARLMSQA
Sbjct: 1   MVSQPDTGEMALEIVDQLVRSAAVDIVVIDSVAALTPRSEIEGEMGDVSVGSQARLMSQA 60

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           +RK+T +I +S C ++F+NQ+R+KIGVM+G+PETTTGGNALKFY+SVRLDIRR+ ++K  
Sbjct: 61  MRKITGNIGKSGCTVIFLNQLRLKIGVMYGNPETTTGGNALKFYASVRLDIRRIQTLKKG 120

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
               G + +VKV KNK+A PF+  EFDI++G GIS  G L+DL  +  +V + GAW+S++
Sbjct: 121 TEEFGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVVRKGAWYSYE 180

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           G  +GQGR+N+ +++ +N E A  IE+L+RQ
Sbjct: 181 GDNIGQGRDNTIVWMEQNPEAATTIETLVRQ 211


>gi|29652240|gb|AAO87781.1| RecA [Listeria monocytogenes]
          Length = 194

 Score =  272 bits (695), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 130/194 (67%), Positives = 162/194 (83%), Gaps = 2/194 (1%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESS
Sbjct: 3   ALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESS 60

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI +
Sbjct: 61  GKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAE 120

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +
Sbjct: 121 ALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAI 180

Query: 199 FINQMRMKIGVMFG 212
           FINQ+R K+GVMFG
Sbjct: 181 FINQIREKVGVMFG 194


>gi|163960883|gb|ABY49986.1| recombination protein A [Bradyrhizobium sp. CCBAU 85057]
          Length = 160

 Score =  271 bits (694), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 126/157 (80%), Positives = 147/157 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSLGLDIALG+GG P+GR++EIYGPESSGKTTLALHTIA++QK GG CAFVDAE
Sbjct: 4   IETISTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTTLALHTIAEAQKKGGVCAFVDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV+L +LLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIE
Sbjct: 64  HALDPVYARKLGVNLDDLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           G+MG+  PG+QARLMSQALRKLT+SISRS C+++FIN
Sbjct: 124 GEMGDVQPGLQARLMSQALRKLTASISRSNCMVIFIN 160


>gi|291246119|gb|ADD85184.1| RecA [Borrelia recurrentis]
          Length = 193

 Score =  271 bits (694), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 126/187 (67%), Positives = 163/187 (87%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SG + LD A+GIGG+P+GR+VEI+GPESSGKTTL L  IA+ QKTGG  AF+DAEHALD 
Sbjct: 1   SGFILLDEAIGIGGYPRGRVVEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YAR LGV++  L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAAL P+AEI+G+MG+
Sbjct: 61  VYARALGVNINELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALMPQAEIDGEMGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           +  G+QARLMS+ALRK+T+ +S+S   ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+
Sbjct: 121 TQIGLQARLMSKALRKITAILSKSNACIMFINQIRMKIGLVFGSPETTTGGNALKFYSSL 180

Query: 230 RLDIRRV 236
           RL++R+V
Sbjct: 181 RLEVRKV 187


>gi|299152207|gb|ADJ18193.1| recombinase A [Bradyrhizobium pachyrhizi]
          Length = 162

 Score =  271 bits (694), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 126/162 (77%), Positives = 149/162 (91%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +SSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEH
Sbjct: 1   ETISSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG
Sbjct: 61  ALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVRSGAVDVLVIDSVAALVPKAELEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 162


>gi|213012510|gb|ACJ38821.1| recombination-repair protein [Vibrio sp. R-684]
          Length = 176

 Score =  271 bits (694), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 123/176 (69%), Positives = 154/176 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRI 176


>gi|307343376|emb|CBJ18129.1| recombinase A [Micromonospora sp. GUI13]
          Length = 179

 Score =  271 bits (694), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 126/179 (70%), Positives = 152/179 (84%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG P+GR+VE+YGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGVGGLPRGRVVEVYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   +L+SQPDTGEQALEI DML+R+GA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDAMLVSQPDTGEQALEIADMLIRAGALDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
            G+QAR MSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR
Sbjct: 121 VGLQARGMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVR 179


>gi|117667680|gb|ABK55886.1| recombinase A [Streptomyces griseobrunneus]
 gi|157000351|gb|ABV00475.1| recombinase A [Streptomyces bacillaris]
 gi|157000387|gb|ABV00493.1| recombinase A [Streptomyces sanglieri]
          Length = 168

 Score =  271 bits (694), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 125/168 (74%), Positives = 151/168 (89%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD++NL++SQPD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIENLILSQPDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|62548787|gb|AAX86845.1| RecA [Rhizobium galegae bv. orientalis]
 gi|62548789|gb|AAX86846.1| RecA [Rhizobium galegae bv. officinalis]
 gi|62548793|gb|AAX86848.1| RecA [Rhizobium galegae bv. orientalis]
          Length = 160

 Score =  271 bits (694), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 134/161 (83%), Positives = 149/161 (92%), Gaps = 1/161 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  +I E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++VID
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 160


>gi|62548801|gb|AAX86852.1| RecA [Rhizobium etli bv. phaseoli]
          Length = 160

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 131/161 (81%), Positives = 150/161 (93%), Gaps = 1/161 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  ++ E IE +S+GSLGLDIALG+GG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENVIE-IETISTGSLGLDIALGVGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 160


>gi|51235253|gb|AAT98471.1| recombination protein A [Rhizobium huautlense]
 gi|51235255|gb|AAT98472.1| recombination protein A [Rhizobium huautlense]
          Length = 160

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 134/161 (83%), Positives = 149/161 (92%), Gaps = 1/161 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  +I E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSSENIVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 160


>gi|289812925|gb|ADD20923.1| recombinase A [Bradyrhizobium sp. CCBAU 33067]
          Length = 162

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 126/161 (78%), Positives = 149/161 (92%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEH
Sbjct: 1   EAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG
Sbjct: 61  ALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           +MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 161


>gi|220961014|gb|ACL92973.1| recombinase A [Streptomyces abikoensis]
 gi|220961016|gb|ACL92974.1| recombinase A [Streptomyces ehimensis]
 gi|220961038|gb|ACL92985.1| recombinase A [Streptomyces luteoverticillatus]
          Length = 168

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 127/168 (75%), Positives = 149/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VEIYGPESSGKTTL LH +A +Q+ GGT AFVDAEHALD  YARKL
Sbjct: 1   DVALGVGGLPRGRVVEIYGPESSGKTTLTLHAVANAQRAGGTVAFVDAEHALDPEYARKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|68635342|emb|CAF21743.1| recombinase A [Lactobacillus algidus]
          Length = 187

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 127/186 (68%), Positives = 157/186 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+V S+G L LD ALG+GGFPKGRI+EIYGPESSGKTT+ALH  A+ QK GGT A++DAE
Sbjct: 2   IDVNSTGILSLDYALGVGGFPKGRIIEIYGPESSGKTTIALHATAEVQKNGGTVAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGVD+  LL+SQPDTGEQ LEI D LV SGAVD++VIDSVAAL PRAEIE
Sbjct: 62  NAMDPAYATALGVDIDGLLLSQPDTGEQGLEIADALVSSGAVDLVVIDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QAR+MSQALRKL  SI++++  ++FINQ+R K+GVMFGSPETT GG ALK
Sbjct: 122 GEMGDAHVGLQARMMSQALRKLAGSINKTRTAVIFINQLREKVGVMFGSPETTPGGRALK 181

Query: 225 FYSSVR 230
           FY+++R
Sbjct: 182 FYATIR 187


>gi|163960898|gb|ABY49993.1| recombination protein A [Mesorhizobium mediterraneum]
          Length = 160

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 127/157 (80%), Positives = 146/157 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAE
Sbjct: 4   IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIE
Sbjct: 64  HALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           G+MG+SLPG+QARLMSQALRKLT+SISRS  +++FI 
Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFIT 160


>gi|289812917|gb|ADD20919.1| recombinase A [Bradyrhizobium sp. CCBAU 23155]
 gi|289812927|gb|ADD20924.1| recombinase A [Bradyrhizobium canariense]
 gi|325512785|gb|ADZ23581.1| RecA [Bradyrhizobium yuanmingense]
          Length = 161

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 126/161 (78%), Positives = 149/161 (92%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEH
Sbjct: 1   EAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG
Sbjct: 61  ALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           +MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 161


>gi|68637431|emb|CAF21818.1| recombinase A [Weissella minor]
          Length = 190

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 128/185 (69%), Positives = 159/185 (85%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALGIGG+PKGRI+EIYGPESSGKTTLALH  A++QK GG  A++DAE+A+D
Sbjct: 6   STGSLKLDIALGIGGYPKGRIMEIYGPESSGKTTLALHAAAEAQKAGGIVAYIDAENAID 65

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
             YAR LGVD+  LL+SQPDTGEQ L I D L+ SGAVD++V+DSVAALTP+AEI+G++G
Sbjct: 66  VEYARALGVDVDELLLSQPDTGEQGLAIADELISSGAVDLVVVDSVAALTPKAEIDGEIG 125

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QAR+MSQALRK++ SI ++   ++FINQ+R KIGVMFG+PETT GG ALKFYSS
Sbjct: 126 DSTVGLQARMMSQALRKMSGSILKTGTTVIFINQLREKIGVMFGNPETTPGGRALKFYSS 185

Query: 229 VRLDI 233
           VRLD+
Sbjct: 186 VRLDV 190


>gi|193795040|gb|ACF21656.1| RecA [Rhizobium tropici]
          Length = 165

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 134/166 (80%), Positives = 151/166 (90%), Gaps = 1/166 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKALEAALS I R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI+EI
Sbjct: 1   SKALEAALSLIDRSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           ALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARL
Sbjct: 120 ALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARL 165


>gi|213950726|gb|ACJ54608.1| recombination protein A [Mesorhizobium sp. CCBAU 41182]
          Length = 163

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 129/164 (78%), Positives = 151/164 (92%), Gaps = 1/164 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A
Sbjct: 1   GSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           ++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++
Sbjct: 60  EAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVL 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           V+DSVAALTPRAEIEG+MG++LPG+QARLMSQALRKLT+SISRS
Sbjct: 120 VVDSVAALTPRAEIEGEMGDALPGLQARLMSQALRKLTASISRS 163


>gi|217037923|gb|ACJ76431.1| RecA [Bradyrhizobium sp. STM 3565]
          Length = 170

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 132/171 (77%), Positives = 152/171 (88%), Gaps = 1/171 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AALSQI+R +GKG++M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYG
Sbjct: 1   ALAAALSQIERQFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           EI D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRK
Sbjct: 120 EICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRK 170


>gi|325551426|gb|ADZ28554.1| recombinase A [Streptomyces cinnamoneus]
          Length = 168

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 128/168 (76%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VEIYGPESSGKTTL LH +A +QK GGT AFVDAEHALD  YAR L
Sbjct: 1   DVALGVGGLPRGRVVEIYGPESSGKTTLTLHAVANAQKAGGTVAFVDAEHALDPEYARAL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD  NL++SQPDTGEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDNLILSQPDTGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|296178612|dbj|BAJ07689.1| recombinase A [Kosmotoga arenicorallina]
          Length = 190

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 127/190 (66%), Positives = 159/190 (83%)

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++EIYG ESSGKTT+ALH IA+ QK GG  AFVDAEHALD  YAR LG+D+ +LLISQ
Sbjct: 1   GRVIEIYGAESSGKTTIALHAIAEVQKAGGIAAFVDAEHALDMSYARALGIDVDSLLISQ 60

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI + LVRS AVD++V+DSVAAL PRAEIEG MGE   G+QARLMSQALRK+
Sbjct: 61  PDYGEQALEIVEGLVRSNAVDLVVVDSVAALVPRAEIEGSMGELQVGLQARLMSQALRKI 120

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
             ++S+S+ I++FINQ RMKIGV++G+PETTTGG ALKFYSSVRL++RR  ++++ + + 
Sbjct: 121 AGTVSKSRSIVMFINQTRMKIGVVYGNPETTTGGVALKFYSSVRLEVRRSSALREGNEVI 180

Query: 247 GNQTRVKVVK 256
           GN+  +KVVK
Sbjct: 181 GNEVTIKVVK 190


>gi|163960857|gb|ABY49973.1| recombination protein A [Rhizobium leguminosarum]
          Length = 160

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 127/157 (80%), Positives = 147/157 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 4   IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAE E
Sbjct: 64  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEFE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           G+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FIN
Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFIN 160


>gi|330369292|gb|AEC12036.1| recombination protein A [Bradyrhizobium sp. CCBAU 051161]
          Length = 160

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 126/160 (78%), Positives = 149/160 (93%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD
Sbjct: 1   SSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG
Sbjct: 61  PVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           ++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIG
Sbjct: 121 DALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIG 160


>gi|256809261|gb|ACV30731.1| recombinase A [Ochrobactrum anthropi]
 gi|256809263|gb|ACV30732.1| recombinase A [Ochrobactrum anthropi]
 gi|256809265|gb|ACV30733.1| recombinase A [Ochrobactrum anthropi]
 gi|256809267|gb|ACV30734.1| recombinase A [Ochrobactrum anthropi]
 gi|256809269|gb|ACV30735.1| recombinase A [Ochrobactrum anthropi]
 gi|256809271|gb|ACV30736.1| recombinase A [Ochrobactrum anthropi]
 gi|256809273|gb|ACV30737.1| recombinase A [Ochrobactrum anthropi]
 gi|256809275|gb|ACV30738.1| recombinase A [Ochrobactrum anthropi]
 gi|256809277|gb|ACV30739.1| recombinase A [Ochrobactrum anthropi]
 gi|256809279|gb|ACV30740.1| recombinase A [Ochrobactrum anthropi]
 gi|256809281|gb|ACV30741.1| recombinase A [Ochrobactrum anthropi]
 gi|256809283|gb|ACV30742.1| recombinase A [Ochrobactrum anthropi]
 gi|256809285|gb|ACV30743.1| recombinase A [Ochrobactrum anthropi]
 gi|256809287|gb|ACV30744.1| recombinase A [Ochrobactrum anthropi ATCC 49188]
 gi|256809289|gb|ACV30745.1| recombinase A [Ochrobactrum anthropi]
 gi|256809291|gb|ACV30746.1| recombinase A [Ochrobactrum anthropi]
 gi|256809293|gb|ACV30747.1| recombinase A [Ochrobactrum anthropi]
 gi|256809295|gb|ACV30748.1| recombinase A [Ochrobactrum anthropi]
 gi|256809297|gb|ACV30749.1| recombinase A [Ochrobactrum anthropi]
 gi|256809299|gb|ACV30750.1| recombinase A [Ochrobactrum anthropi]
 gi|256809301|gb|ACV30751.1| recombinase A [Ochrobactrum anthropi]
 gi|256809303|gb|ACV30752.1| recombinase A [Ochrobactrum anthropi]
 gi|256809305|gb|ACV30753.1| recombinase A [Ochrobactrum anthropi]
 gi|256809307|gb|ACV30754.1| recombinase A [Ochrobactrum anthropi]
 gi|256809309|gb|ACV30755.1| recombinase A [Ochrobactrum anthropi]
 gi|256809311|gb|ACV30756.1| recombinase A [Ochrobactrum anthropi]
 gi|256809313|gb|ACV30757.1| recombinase A [Ochrobactrum anthropi]
 gi|256809315|gb|ACV30758.1| recombinase A [Ochrobactrum anthropi]
 gi|256809317|gb|ACV30759.1| recombinase A [Ochrobactrum anthropi]
 gi|256809319|gb|ACV30760.1| recombinase A [Ochrobactrum anthropi]
 gi|256809321|gb|ACV30761.1| recombinase A [Ochrobactrum anthropi]
 gi|256809323|gb|ACV30762.1| recombinase A [Ochrobactrum anthropi]
 gi|256809325|gb|ACV30763.1| recombinase A [Ochrobactrum anthropi]
 gi|256809327|gb|ACV30764.1| recombinase A [Ochrobactrum anthropi]
 gi|256809329|gb|ACV30765.1| recombinase A [Ochrobactrum anthropi]
 gi|256809331|gb|ACV30766.1| recombinase A [Ochrobactrum anthropi]
 gi|256809333|gb|ACV30767.1| recombinase A [Ochrobactrum anthropi]
 gi|256809335|gb|ACV30768.1| recombinase A [Ochrobactrum anthropi]
 gi|256809337|gb|ACV30769.1| recombinase A [Ochrobactrum anthropi]
 gi|256809339|gb|ACV30770.1| recombinase A [Ochrobactrum anthropi]
 gi|256809341|gb|ACV30771.1| recombinase A [Ochrobactrum anthropi]
 gi|256809343|gb|ACV30772.1| recombinase A [Ochrobactrum anthropi]
 gi|256809345|gb|ACV30773.1| recombinase A [Ochrobactrum anthropi]
 gi|256809347|gb|ACV30774.1| recombinase A [Ochrobactrum anthropi]
 gi|256809349|gb|ACV30775.1| recombinase A [Ochrobactrum anthropi]
 gi|256809351|gb|ACV30776.1| recombinase A [Ochrobactrum anthropi]
 gi|256809353|gb|ACV30777.1| recombinase A [Ochrobactrum anthropi]
 gi|256809355|gb|ACV30778.1| recombinase A [Ochrobactrum anthropi]
 gi|256809357|gb|ACV30779.1| recombinase A [Ochrobactrum anthropi]
 gi|256809359|gb|ACV30780.1| recombinase A [Ochrobactrum anthropi]
 gi|256809361|gb|ACV30781.1| recombinase A [Ochrobactrum anthropi]
 gi|256809363|gb|ACV30782.1| recombinase A [Ochrobactrum anthropi]
 gi|256809365|gb|ACV30783.1| recombinase A [Ochrobactrum anthropi]
 gi|256809367|gb|ACV30784.1| recombinase A [Ochrobactrum anthropi]
 gi|256809369|gb|ACV30785.1| recombinase A [Ochrobactrum anthropi]
 gi|256809371|gb|ACV30786.1| recombinase A [Ochrobactrum cytisi]
 gi|256809373|gb|ACV30787.1| recombinase A [Ochrobactrum lupini]
 gi|256809375|gb|ACV30788.1| recombinase A [Ochrobactrum anthropi]
 gi|256809377|gb|ACV30789.1| recombinase A [Ochrobactrum anthropi]
 gi|256809379|gb|ACV30790.1| recombinase A [Ochrobactrum anthropi]
 gi|256809381|gb|ACV30791.1| recombinase A [Ochrobactrum anthropi]
 gi|256809383|gb|ACV30792.1| recombinase A [Ochrobactrum anthropi]
 gi|256809385|gb|ACV30793.1| recombinase A [Ochrobactrum anthropi]
 gi|256809387|gb|ACV30794.1| recombinase A [Ochrobactrum anthropi]
 gi|256809389|gb|ACV30795.1| recombinase A [Ochrobactrum anthropi]
 gi|256809391|gb|ACV30796.1| recombinase A [Ochrobactrum anthropi]
 gi|256809393|gb|ACV30797.1| recombinase A [Ochrobactrum anthropi]
 gi|256809395|gb|ACV30798.1| recombinase A [Ochrobactrum anthropi]
 gi|256809397|gb|ACV30799.1| recombinase A [Ochrobactrum anthropi]
 gi|256809399|gb|ACV30800.1| recombinase A [Ochrobactrum anthropi]
          Length = 163

 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 130/164 (79%), Positives = 149/164 (90%), Gaps = 1/164 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL+AALSQI+R +GKG+IM+LG    + E IE V +GSL LDIALG+GG PKGRIVEIY
Sbjct: 1   KALDAALSQIERAFGKGSIMRLGKNAPVIE-IETVPTGSLSLDIALGVGGLPKGRIVEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQA
Sbjct: 60  GPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           LEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QAR
Sbjct: 120 LEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQAR 163


>gi|293337681|gb|ADE43116.1| recombinase A [Pseudomonas fluorescens]
 gi|293337683|gb|ADE43117.1| recombinase A [Pseudomonas tolaasii]
 gi|293337685|gb|ADE43118.1| recombinase A [Pseudomonas tolaasii]
 gi|293337700|gb|ADE43124.1| recombinase A [Pseudomonas fluorescens]
          Length = 179

 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 126/179 (70%), Positives = 156/179 (87%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+
Sbjct: 1   LDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGE 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY
Sbjct: 61  MGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFY 120

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           +SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+YG+GI   GE+IDL
Sbjct: 121 ASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDL 179


>gi|325512805|gb|ADZ23591.1| RecA [Bradyrhizobium yuanmingense]
 gi|326328140|gb|ADZ54137.1| recombination protein A [Bradyrhizobium sp. CCBAU 15779]
          Length = 160

 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 126/160 (78%), Positives = 149/160 (93%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHAL
Sbjct: 1   VSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+M
Sbjct: 61  DPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           G++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 GDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 160


>gi|163960855|gb|ABY49972.1| recombination protein A [Rhizobium leguminosarum]
 gi|163960863|gb|ABY49976.1| recombination protein A [Rhizobium leguminosarum]
          Length = 160

 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 127/157 (80%), Positives = 147/157 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 4   IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE
Sbjct: 64  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           G+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FI 
Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFIT 160


>gi|158631766|gb|ABW74988.1| RecA [Bradyrhizobium elkanii]
          Length = 161

 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 125/161 (77%), Positives = 149/161 (92%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHAL
Sbjct: 1   VSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+M
Sbjct: 61  DPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIG
Sbjct: 121 GDALPGLQARLMSQALRKLTASINKSHTMVIFINQIRMKIG 161


>gi|325512775|gb|ADZ23576.1| RecA [Bradyrhizobium japonicum]
          Length = 161

 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 125/161 (77%), Positives = 149/161 (92%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEH
Sbjct: 1   EAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG
Sbjct: 61  ALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           +MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 161


>gi|293337695|gb|ADE43123.1| recombinase A [Pseudomonas viridiflava]
          Length = 179

 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 126/179 (70%), Positives = 156/179 (87%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+
Sbjct: 1   LDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGE 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY
Sbjct: 61  MGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFY 120

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           +SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+YG+GI   GE+IDL
Sbjct: 121 ASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEIIDL 179


>gi|158905841|gb|ABW82570.1| RecA [Bradyrhizobiaceae bacterium S11]
 gi|158905843|gb|ABW82571.1| RecA [Bradyrhizobiaceae bacterium S28]
          Length = 162

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 125/162 (77%), Positives = 149/162 (91%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEH
Sbjct: 1   ETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG
Sbjct: 61  ALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSHTMVIFINQIRMKI 162


>gi|220961050|gb|ACL92991.1| recombinase A [Streptomyces griseoverticillatus]
 gi|220961060|gb|ACL92996.1| recombinase A [Streptomyces cinnamoneus]
          Length = 168

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 127/168 (75%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GGT AFVDAEHALD  YAR L
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGTVAFVDAEHALDPEYARAL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD  NL++SQPDTGEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDNLILSQPDTGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|229458654|gb|ACQ65985.1| recombinase A [Bradyrhizobium sp. SEMIA 6146]
          Length = 175

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 129/175 (73%), Positives = 155/175 (88%), Gaps = 1/175 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG      + +E VS GSLGLDIALG+GG PKGRIVEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSMD-VETVSRGSLGLDIALGVGGLPKGRIVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++
Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175


>gi|307343135|emb|CBJ18097.1| recombinase A [Micromonospora auratinigra]
          Length = 179

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 128/179 (71%), Positives = 151/179 (84%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDALLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
            G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALK  +SVR
Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLDASVR 179


>gi|220961046|gb|ACL92989.1| recombinase A [Streptomyces macrosporus]
          Length = 168

 Score =  270 bits (691), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 125/168 (74%), Positives = 150/168 (89%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GGFP+GR+VE+YGPESSGKTTL LH +A +QK GGT AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGFPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGTVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ +L++SQPD GEQALEITDML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDVDSLILSQPDNGEQALEITDMLIRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+T ++S+SK   +FINQ+R K+GVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITGALSQSKTTAIFINQLREKVGVMFGSPETTTGGRAL 168


>gi|117667644|gb|ABK55868.1| recombinase A [Streptomyces bobili]
          Length = 168

 Score =  270 bits (691), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 126/168 (75%), Positives = 149/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR++E+YGPESSGKTTL LH +A +QK GGT AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVIEVYGPESSGKTTLTLHAVANAQKAGGTVAFVDAEHALDPEYAQKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NLL+SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLLLSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|293337689|gb|ADE43120.1| recombinase A [Pseudomonas chlororaphis]
 gi|293337693|gb|ADE43122.1| recombinase A [Pseudomonas chlororaphis]
          Length = 179

 Score =  270 bits (691), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 126/179 (70%), Positives = 156/179 (87%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IVIDSVAAL P+AEIEG+
Sbjct: 1   LDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVIDSVAALVPKAEIEGE 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY
Sbjct: 61  MGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFY 120

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           +SVRLDIRR G++K+ D + G++TRVK+VKNK+A PF+Q EF I+YG+GI   GE+IDL
Sbjct: 121 ASVRLDIRRTGAVKEGDEVVGSETRVKIVKNKVAPPFRQAEFQILYGKGIYLNGEIIDL 179


>gi|289812919|gb|ADD20920.1| recombinase A [Bradyrhizobium elkanii]
          Length = 165

 Score =  270 bits (691), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 124/162 (76%), Positives = 149/162 (91%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE
Sbjct: 3   VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 63  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 123 GEMGDALPGLQARLMSQALRKLTASINKSHTMVIFINQIRMK 164


>gi|163960849|gb|ABY49969.1| recombination protein A [Rhizobium gallicum]
 gi|163960851|gb|ABY49970.1| recombination protein A [Rhizobium gallicum]
 gi|163960853|gb|ABY49971.1| recombination protein A [Rhizobium gallicum]
 gi|163960865|gb|ABY49977.1| recombination protein A [Rhizobium mongolense]
          Length = 160

 Score =  270 bits (691), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 128/157 (81%), Positives = 146/157 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 4   IETISTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE
Sbjct: 64  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           G+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FI 
Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFIT 160


>gi|289812913|gb|ADD20917.1| recombinase A [Bradyrhizobium sp. CCBAU 23086]
          Length = 164

 Score =  270 bits (691), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 123/163 (75%), Positives = 150/163 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VS+GSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE
Sbjct: 2   VETVSTGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGA+D++V+DSVAAL P+AE+E
Sbjct: 62  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALVPKAELE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 122 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 164


>gi|193090229|gb|ACF15286.1| recombination protein A [Rhizobium leguminosarum]
          Length = 166

 Score =  270 bits (691), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 129/167 (77%), Positives = 153/167 (91%), Gaps = 1/167 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA+
Sbjct: 1   SVMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V
Sbjct: 60  AQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           +DSVAALTPRAEIEG+MG+SLPG+QARLM QALRKLT+SIS+S  ++
Sbjct: 120 VDSVAALTPRAEIEGEMGDSLPGLQARLMGQALRKLTASISKSNTMV 166


>gi|291246133|gb|ADD85191.1| RecA [Borrelia recurrentis]
          Length = 194

 Score =  270 bits (690), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 124/182 (68%), Positives = 160/182 (87%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LD A+GIGG+P+GR+VEI+GPESSGKTTL L  IA+ QKTGG  AF+DAEHALD +YAR 
Sbjct: 4   LDEAIGIGGYPRGRVVEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAEHALDPVYARA 63

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           LGV++  L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAAL P+AEI+G+MG++  G+
Sbjct: 64  LGVNINELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGL 123

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
           QARLMS+ALRK+T+ +S+S   ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R
Sbjct: 124 QARLMSKALRKITAILSKSNACIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVR 183

Query: 235 RV 236
           +V
Sbjct: 184 KV 185


>gi|325515713|gb|ADZ24470.1| recombination protein A [Bradyrhizobium sp. CCBAU 15796]
          Length = 159

 Score =  270 bits (690), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 126/159 (79%), Positives = 148/159 (93%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +Y
Sbjct: 1   SLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           ARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++L
Sbjct: 61  ARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGDAL 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           PG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIGVM
Sbjct: 121 PGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVM 159


>gi|291246129|gb|ADD85189.1| RecA [Borrelia recurrentis]
          Length = 189

 Score =  270 bits (690), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 124/182 (68%), Positives = 160/182 (87%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LD A+GIGG+P+GR+VEI+GPESSGKTTL L  IA+ QKTGG  AF+DAEHALD +YAR 
Sbjct: 3   LDEAIGIGGYPRGRVVEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAEHALDPVYARA 62

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           LGV++  L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAAL P+AEI+G+MG++  G+
Sbjct: 63  LGVNINELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGL 122

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
           QARLMS+ALRK+T+ +S+S   ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R
Sbjct: 123 QARLMSKALRKITAILSKSNACIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVR 182

Query: 235 RV 236
           +V
Sbjct: 183 KV 184


>gi|217037925|gb|ACJ76432.1| RecA [Bradyrhizobium sp. STM 3571]
          Length = 171

 Score =  270 bits (690), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 131/172 (76%), Positives = 153/172 (88%), Gaps = 1/172 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AALSQI+R +GKG++M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYG
Sbjct: 1   ALAAALSQIERQFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           EI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKL
Sbjct: 120 EICDTLVRSGAVDVMVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKL 171


>gi|220961008|gb|ACL92970.1| recombinase A [Streptomyces aureoversilis]
 gi|220961026|gb|ACL92979.1| recombinase A [Streptomyces rectiverticillatus]
          Length = 168

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 126/168 (75%), Positives = 149/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VEIYGPESSGKTTL LH +A +Q+ GGT AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEIYGPESSGKTTLTLHAVANAQRAGGTVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|289190686|gb|ADC93448.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-11]
          Length = 169

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 127/159 (79%), Positives = 148/159 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 11  IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 70

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++ +LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E
Sbjct: 71  HALDPVYARKLGVNIDDLLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELE 130

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G+MGESLPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 131 GEMGESLPGLQARLMSQALRKLTASINKSNTMVIFINQI 169


>gi|154432321|gb|ABS82041.1| RecA [Rhizobium mesosinicum]
          Length = 171

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 128/157 (81%), Positives = 146/157 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 12  IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 71

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIE
Sbjct: 72  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIE 131

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           G+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FI 
Sbjct: 132 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFIT 168


>gi|227184005|gb|ACP20121.1| RecA [Bradyrhizobium sp. ORS310]
 gi|227184007|gb|ACP20122.1| RecA [Bradyrhizobium sp. ORS318]
 gi|227184033|gb|ACP20135.1| RecA [Bradyrhizobium sp. ORS372]
 gi|227184037|gb|ACP20137.1| RecA [Bradyrhizobium sp. ORS377]
 gi|227184041|gb|ACP20139.1| RecA [Bradyrhizobium sp. ORS390]
 gi|227184043|gb|ACP20140.1| RecA [Bradyrhizobium sp. ORS391]
 gi|227184045|gb|ACP20141.1| RecA [Bradyrhizobium sp. ORS393]
          Length = 174

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 129/175 (73%), Positives = 155/175 (88%), Gaps = 1/175 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG++M+LG      + +E VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTT
Sbjct: 1   IERQFGKGSVMKLGKNDRSMD-VETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A++QK GG CAF+DAEHALD IYARKLGV++  LLISQPDTGEQALEI D LVR
Sbjct: 60  LALHTVAEAQKKGGICAFIDAEHALDPIYARKLGVNIDELLISQPDTGEQALEICDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           SGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 SGAVDVMVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 174


>gi|330466420|ref|YP_004404163.1| recA protein [Verrucosispora maris AB-18-032]
 gi|328809391|gb|AEB43563.1| recA protein [Verrucosispora maris AB-18-032]
          Length = 712

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 130/208 (62%), Positives = 166/208 (79%), Gaps = 2/208 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+ AL+QI + +GKG++M+LG +  +   I  + +GS+ LD+ALG+GG P+GR++
Sbjct: 6   DREKALDLALAQIDKQFGKGSVMRLGERPVVQTAI--IPTGSIALDVALGVGGLPRGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA+ LGVD   LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPEYAKALGVDTDALLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T  +
Sbjct: 124 EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGVL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTT 218
           + +    +FINQ+R KIGVMFG    +T
Sbjct: 184 NNTGTTAIFINQLREKIGVMFGCMSYST 211



 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 88/161 (54%), Positives = 118/161 (73%), Gaps = 2/161 (1%)

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYS 227
           E +  + AR++   ++  T S++R   I V  N      GVM   SPETTTGG ALKFY+
Sbjct: 526 EEIMPVPARIIDVRVKPKTRSMNRFD-IEVEGNHNYFVDGVMVHNSPETTTGGRALKFYA 584

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           SVRLD+RR+ S+KD   + GN+TRVKVVKNK+ASPFKQ EFDIMYG+GIS  G LID+GV
Sbjct: 585 SVRLDVRRIESLKDGTDVVGNRTRVKVVKNKVASPFKQAEFDIMYGKGISREGSLIDVGV 644

Query: 288 KASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           + +I+ KSGAW++++G +LGQG+E ++ FLREN ++A  IE
Sbjct: 645 EQAIIRKSGAWYTYEGDQLGQGKEKAREFLRENPDVAAEIE 685


>gi|29651985|gb|AAO87655.1| RecA [Listeria monocytogenes]
 gi|29652005|gb|AAO87665.1| RecA [Listeria monocytogenes]
 gi|29652058|gb|AAO87691.1| RecA [Listeria monocytogenes]
 gi|29652122|gb|AAO87722.1| RecA [Listeria monocytogenes]
 gi|29652242|gb|AAO87782.1| RecA [Listeria monocytogenes]
 gi|29652252|gb|AAO87787.1| RecA [Listeria monocytogenes]
          Length = 190

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 128/192 (66%), Positives = 161/192 (83%), Gaps = 2/192 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MRMKIGVMFGSP 214
           +R K+GVMFG+P
Sbjct: 179 IREKVGVMFGNP 190


>gi|254055251|gb|ACT64225.1| RecA [Streptomyces cinnamonensis]
          Length = 186

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 127/188 (67%), Positives = 160/188 (85%), Gaps = 2/188 (1%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           +R +GKGA+M++G + +  E IEV+ +GS  LD+ALG+GG P+GR+VE+YGPESSGKTTL
Sbjct: 1   ERQFGKGAVMRMGERPN--EPIEVIPTGSTALDVALGVGGIPRGRVVEVYGPESSGKTTL 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            LH +A +Q+ GG  AFVDAEHALD  YA+KLGVD+ NL++SQPD GEQALEI DMLVRS
Sbjct: 59  TLHAVANAQRAGGAVAFVDAEHALDPEYAKKLGVDIDNLILSQPDNGEQALEIVDMLVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+TS++++SK   +FINQ+
Sbjct: 119 GALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITSALNQSKTTAIFINQL 178

Query: 204 RMKIGVMF 211
           R KIGVMF
Sbjct: 179 REKIGVMF 186


>gi|157000367|gb|ABV00483.1| recombinase A [Streptomyces globosus]
 gi|318084954|gb|ADV39367.1| recombinase A [Streptomyces neyagawaensis]
 gi|318084960|gb|ADV39370.1| recombinase A [Streptomyces alanosinicus]
 gi|318084970|gb|ADV39375.1| recombinase A [Streptomyces ipomoeae]
 gi|318084998|gb|ADV39389.1| recombinase A [Streptomyces puniciscabiei]
          Length = 168

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 127/168 (75%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VEIYGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YARKL
Sbjct: 1   DVALGVGGLPRGRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYARKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|299737724|gb|ADJ37185.1| recombinase A [Bradyrhizobium sp. CCBAU 45281]
          Length = 160

 Score =  270 bits (689), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 125/159 (78%), Positives = 148/159 (93%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHAL
Sbjct: 2   VSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+M
Sbjct: 62  DPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEM 121

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 122 GDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 160


>gi|62548805|gb|AAX86854.1| RecA [Rhizobium leguminosarum bv. viciae]
          Length = 160

 Score =  270 bits (689), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 130/161 (80%), Positives = 150/161 (93%), Gaps = 1/161 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 160


>gi|227184015|gb|ACP20126.1| RecA [Bradyrhizobium sp. ORS330]
          Length = 174

 Score =  270 bits (689), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 128/175 (73%), Positives = 155/175 (88%), Gaps = 1/175 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG++M+LG      + +E VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTT
Sbjct: 1   IERQFGKGSVMKLGKNDRSMD-VETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVR
Sbjct: 60  LALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIHELLISQPDTGEQALEICDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           SGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 SGAVDVLVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 174


>gi|117667646|gb|ABK55869.1| recombinase A [Streptomyces cremeus]
 gi|117667666|gb|ABK55879.1| recombinase A [Streptomyces spiroverticillatus]
          Length = 168

 Score =  270 bits (689), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 127/168 (75%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           DIALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GGT AFVDAEHALD  YA+ L
Sbjct: 1   DIALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGTVAFVDAEHALDPEYAKAL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD  NL++SQPDTGEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDNLILSQPDTGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|62548795|gb|AAX86849.1| RecA [Rhizobium gallicum bv. gallicum]
 gi|62548797|gb|AAX86850.1| RecA [Rhizobium mongolense]
 gi|62548799|gb|AAX86851.1| RecA [Rhizobium yanglingense]
          Length = 160

 Score =  270 bits (689), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 131/161 (81%), Positives = 149/161 (92%), Gaps = 1/161 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  ++ E IE +S+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENVVE-IETISTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 160


>gi|146424682|dbj|BAF62101.1| recombinase A [Bradyrhizobium iriomotense]
 gi|289190650|gb|ADC93430.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-10]
 gi|289190658|gb|ADC93434.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-10]
 gi|289190672|gb|ADC93441.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-10]
 gi|289190676|gb|ADC93443.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-13]
 gi|289190696|gb|ADC93453.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-11]
          Length = 169

 Score =  270 bits (689), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 127/159 (79%), Positives = 148/159 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 11  IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 70

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++ +LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E
Sbjct: 71  HALDPVYARKLGVNIDDLLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELE 130

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G+MGESLPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 131 GEMGESLPGLQARLMSQALRKLTASINKSNTMVIFINQI 169


>gi|325512791|gb|ADZ23584.1| RecA [Bradyrhizobium liaoningense]
          Length = 159

 Score =  270 bits (689), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 126/159 (79%), Positives = 148/159 (93%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHAL
Sbjct: 1   VSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+M
Sbjct: 61  DPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 GDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 159


>gi|160947814|gb|ABX54716.1| RecA protein [Ensifer adhaerens]
          Length = 169

 Score =  270 bits (689), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 134/163 (82%), Positives = 149/163 (91%), Gaps = 1/163 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 8   VDKSKALEAALSQIERSFGKGSIMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRI 66

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 67  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 126

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           GEQALEITD LVRSGA+D++VIDSVAAL PRAEIEG+MG+SLP
Sbjct: 127 GEQALEITDTLVRSGAIDVLVIDSVAALVPRAEIEGEMGDSLP 169


>gi|325512827|gb|ADZ23602.1| RecA [Sinorhizobium sp. CCBAU 051127]
          Length = 158

 Score =  270 bits (689), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 131/159 (82%), Positives = 148/159 (93%), Gaps = 1/159 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A++Q
Sbjct: 1   MKLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           SVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 158


>gi|220961036|gb|ACL92984.1| recombinase A [Streptomyces hiroshimensis]
          Length = 168

 Score =  270 bits (689), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 125/168 (74%), Positives = 149/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GGT AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQRAGGTVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|33087889|gb|AAP93075.1| recombination protein A [Yersinia pseudotuberculosis]
          Length = 196

 Score =  270 bits (689), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 131/198 (66%), Positives = 162/198 (81%), Gaps = 2/198 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 1   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 58

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 59  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 118

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 119 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 178

Query: 191 SRSKCILVFINQMRMKIG 208
             +  +L+FINQ+RMKIG
Sbjct: 179 KNANTLLIFINQIRMKIG 196


>gi|299737720|gb|ADJ37183.1| recombinase A [Bradyrhizobium sp. CCBAU 45389]
          Length = 160

 Score =  270 bits (689), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 125/160 (78%), Positives = 148/160 (92%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEH
Sbjct: 1   EAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG
Sbjct: 61  ALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RM
Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRM 160


>gi|227183981|gb|ACP20109.1| RecA [Bradyrhizobium sp. ORS285]
 gi|227183983|gb|ACP20110.1| RecA [Bradyrhizobium sp. ORS287]
 gi|227183985|gb|ACP20111.1| RecA [Bradyrhizobium sp. ORS294]
 gi|227183987|gb|ACP20112.1| RecA [Bradyrhizobium sp. ORS297]
 gi|227183991|gb|ACP20114.1| RecA [Bradyrhizobium sp. ORS300]
 gi|227183995|gb|ACP20116.1| RecA [Bradyrhizobium sp. ORS303]
 gi|227184001|gb|ACP20119.1| RecA [Bradyrhizobium sp. ORS307]
 gi|227184009|gb|ACP20123.1| RecA [Bradyrhizobium sp. ORS324]
 gi|227184011|gb|ACP20124.1| RecA [Bradyrhizobium sp. ORS327]
 gi|227184013|gb|ACP20125.1| RecA [Bradyrhizobium sp. ORS328]
 gi|227184017|gb|ACP20127.1| RecA [Bradyrhizobium sp. ORS331]
 gi|227184021|gb|ACP20129.1| RecA [Bradyrhizobium sp. ORS344]
 gi|227184025|gb|ACP20131.1| RecA [Bradyrhizobium sp. ORS356]
 gi|227184029|gb|ACP20133.1| RecA [Bradyrhizobium sp. ORS361]
 gi|227184031|gb|ACP20134.1| RecA [Bradyrhizobium sp. ORS368]
 gi|227184035|gb|ACP20136.1| RecA [Bradyrhizobium sp. ORS375]
 gi|227184039|gb|ACP20138.1| RecA [Bradyrhizobium sp. ORS385]
          Length = 174

 Score =  269 bits (688), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 128/175 (73%), Positives = 155/175 (88%), Gaps = 1/175 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG++M+LG      + +E VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTT
Sbjct: 1   IERQFGKGSVMKLGKNDRSMD-VETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVR
Sbjct: 60  LALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           SGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 SGAVDVLVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 174


>gi|158905829|gb|ABW82564.1| RecA [Bradyrhizobiaceae bacterium NS23]
 gi|158905839|gb|ABW82569.1| RecA [Bradyrhizobiaceae bacterium NS28]
          Length = 162

 Score =  269 bits (688), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 125/162 (77%), Positives = 149/162 (91%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           EVVSSGSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALH +A++QK GG CAFVDAEH
Sbjct: 1   EVVSSGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHCVAEAQKKGGICAFVDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGV++  LLISQPD GEQALEI D LVRSGAVD+++IDSVAAL PRAE+EG
Sbjct: 61  ALDPVYARKLGVNVDELLISQPDHGEQALEIADTLVRSGAVDVLIIDSVAALVPRAELEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 162


>gi|117667632|gb|ABK55862.1| recombinase A [Streptomyces finlayi]
          Length = 168

 Score =  269 bits (688), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 125/168 (74%), Positives = 149/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GGT AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKLGGTVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|227183977|gb|ACP20107.1| RecA [Bradyrhizobium sp. ORS277]
 gi|227183979|gb|ACP20108.1| RecA [Bradyrhizobium sp. ORS279]
 gi|227183989|gb|ACP20113.1| RecA [Bradyrhizobium sp. ORS298]
 gi|227184047|gb|ACP20142.1| RecA [Bradyrhizobium sp. ORS400]
          Length = 174

 Score =  269 bits (688), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 128/175 (73%), Positives = 155/175 (88%), Gaps = 1/175 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG++M+LG      + +E VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTT
Sbjct: 1   IERQFGKGSVMKLGKNDRSMD-VETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVR
Sbjct: 60  LALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           SGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 SGAVDVMVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 174


>gi|29652290|gb|AAO87806.1| RecA [Listeria monocytogenes]
          Length = 190

 Score =  269 bits (688), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 129/191 (67%), Positives = 159/191 (83%), Gaps = 2/191 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA
Sbjct: 1   GSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRSGAVD++
Sbjct: 59  EVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDML 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+R K+GV
Sbjct: 119 VIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVGV 178

Query: 210 MFGSPETTTGG 220
           MFG+PE T GG
Sbjct: 179 MFGNPEITPGG 189


>gi|207080819|gb|ACI22753.1| RecA [Rhizobium sp. J3-N52]
          Length = 159

 Score =  269 bits (688), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 130/160 (81%), Positives = 148/160 (92%), Gaps = 1/160 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG+  S+ E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL 
Sbjct: 1   FGKGSVMKLGANESVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAV
Sbjct: 60  TIAEAQKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKL
Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKL 159


>gi|325512845|gb|ADZ23611.1| RecA [Bradyrhizobium yuanmingense]
          Length = 159

 Score =  269 bits (688), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 125/159 (78%), Positives = 148/159 (93%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHAL
Sbjct: 1   VSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+M
Sbjct: 61  DPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 GDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 159


>gi|146431678|gb|ABQ40821.1| recombination-repair protein [Vibrio harveyi]
 gi|146432130|gb|ABQ41047.1| recombination-repair protein [Vibrio campbellii]
 gi|146432235|gb|ABQ41099.1| recombination-repair protein [Vibrio rotiferianus]
 gi|146432237|gb|ABQ41100.1| recombination-repair protein [Vibrio rotiferianus]
          Length = 173

 Score =  269 bits (688), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 121/173 (69%), Positives = 153/173 (88%)

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALT
Sbjct: 1   AFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALT 60

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           P+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTT
Sbjct: 61  PKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTT 120

Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           GGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IM
Sbjct: 121 GGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIM 173


>gi|325512843|gb|ADZ23610.1| RecA [Bradyrhizobium sp. CCBAU 23303]
          Length = 159

 Score =  269 bits (688), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 125/159 (78%), Positives = 148/159 (93%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD
Sbjct: 1   SSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG
Sbjct: 61  PVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 DALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 159


>gi|112806720|emb|CAJ28010.1| recombination protein [Mesorhizobium amorphae]
          Length = 162

 Score =  269 bits (688), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 128/163 (78%), Positives = 149/163 (91%), Gaps = 1/163 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           SQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGK
Sbjct: 1   SQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGK 59

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D L
Sbjct: 60  TTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTL 119

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           VRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQAL
Sbjct: 120 VRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQAL 162


>gi|331029415|gb|AEC49857.1| recombinase A [Bradyrhizobium sp. SEMIA 6145]
          Length = 174

 Score =  269 bits (688), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 128/174 (73%), Positives = 154/174 (88%), Gaps = 1/174 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG      + +E VSSGSLGLDIALG+GG PKGR+VE YGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRVVEXYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI+
Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASIN 174


>gi|299152213|gb|ADJ18196.1| recombinase A [Bradyrhizobium jicamae]
          Length = 176

 Score =  269 bits (688), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 123/164 (75%), Positives = 150/164 (91%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALH +A+ Q+ GG CAF+DAE
Sbjct: 10  IETVSTGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHCVAEGQRKGGICAFIDAE 69

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGA+D++V+DSVAAL P+AE+E
Sbjct: 70  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALVPKAELE 129

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIG
Sbjct: 130 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIG 173


>gi|114155640|dbj|BAF31006.1| recombinase A [Agrobacterium vitis]
 gi|114155642|dbj|BAF31007.1| recombinase A [Agrobacterium vitis]
 gi|114155644|dbj|BAF31008.1| recombinase A [Agrobacterium vitis]
 gi|114155646|dbj|BAF31009.1| recombinase A [Agrobacterium vitis]
 gi|114155648|dbj|BAF31010.1| recombinase A [Agrobacterium vitis]
 gi|114155650|dbj|BAF31011.1| recombinase A [Agrobacterium vitis]
 gi|114155652|dbj|BAF31012.1| recombinase A [Agrobacterium vitis]
 gi|114155654|dbj|BAF31013.1| recombinase A [Agrobacterium vitis]
 gi|114155656|dbj|BAF31014.1| recombinase A [Agrobacterium vitis]
 gi|114155658|dbj|BAF31015.1| recombinase A [Agrobacterium vitis]
 gi|114155660|dbj|BAF31016.1| recombinase A [Agrobacterium vitis]
 gi|118562881|dbj|BAF37808.1| recombinase A [Agrobacterium vitis]
 gi|118562883|dbj|BAF37809.1| recombinase A [Agrobacterium vitis]
 gi|160358241|dbj|BAF93441.1| recombinase A [Agrobacterium vitis]
 gi|160358243|dbj|BAF93442.1| recombinase A [Agrobacterium vitis]
 gi|301601044|dbj|BAJ13211.1| RecA [Agrobacterium vitis]
 gi|301601046|dbj|BAJ13212.1| RecA [Agrobacterium vitis]
 gi|301601048|dbj|BAJ13213.1| RecA [Agrobacterium vitis]
 gi|301601050|dbj|BAJ13214.1| RecA [Agrobacterium vitis]
 gi|301601052|dbj|BAJ13215.1| RecA [Agrobacterium vitis]
 gi|301601054|dbj|BAJ13216.1| RecA [Agrobacterium vitis]
 gi|301601071|dbj|BAJ13224.1| RecA [Agrobacterium vitis]
 gi|301601073|dbj|BAJ13225.1| RecA [Agrobacterium vitis]
          Length = 160

 Score =  269 bits (688), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 132/161 (81%), Positives = 147/161 (91%), Gaps = 1/161 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG+   I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++
Sbjct: 1   IMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEA 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VI
Sbjct: 60  QKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVI 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           DSVAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT SISR
Sbjct: 120 DSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKLTGSISR 160


>gi|226934318|gb|ACO92349.1| recombination protein A [Rhizobium sp. M20]
          Length = 164

 Score =  269 bits (688), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 131/163 (80%), Positives = 149/163 (91%), Gaps = 1/163 (0%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           Q SI E IE + +GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG 
Sbjct: 3   QDSIVE-IETIPTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGI 61

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAAL
Sbjct: 62  CAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAAL 121

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           TPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FI
Sbjct: 122 TPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFI 164


>gi|325512807|gb|ADZ23592.1| RecA [Bradyrhizobium japonicum]
          Length = 160

 Score =  269 bits (688), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 124/159 (77%), Positives = 148/159 (93%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHAL
Sbjct: 2   VSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+M
Sbjct: 62  DPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEM 121

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 122 GDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 160


>gi|301601058|dbj|BAJ13218.1| RecA [Agrobacterium vitis]
          Length = 160

 Score =  269 bits (688), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 128/152 (84%), Positives = 142/152 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 9   VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGVCAFVDAE 68

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTP+AEIE
Sbjct: 69  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPKAEIE 128

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           G+MG+SLPGMQARLMSQALRKLT SISRS C+
Sbjct: 129 GEMGDSLPGMQARLMSQALRKLTGSISRSNCM 160


>gi|51235273|gb|AAT98481.1| recombination protein A [Mesorhizobium amorphae]
          Length = 160

 Score =  269 bits (688), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 129/161 (80%), Positives = 148/161 (91%), Gaps = 1/161 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG+   + E IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++Q
Sbjct: 1   MRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRS 160


>gi|207080813|gb|ACI22750.1| RecA [Rhizobium sp. J3-63]
          Length = 160

 Score =  269 bits (688), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 131/159 (82%), Positives = 147/159 (92%), Gaps = 1/159 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG+  S+ E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TI
Sbjct: 3   KGSIMKLGANESVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 61

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD+
Sbjct: 62  AEAQKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDV 121

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           +V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT
Sbjct: 122 LVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLT 160


>gi|299737712|gb|ADJ37179.1| recombinase A [Bradyrhizobium japonicum]
          Length = 159

 Score =  269 bits (687), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 124/159 (77%), Positives = 148/159 (93%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHAL
Sbjct: 1   VSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+M
Sbjct: 61  DPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 GDALPGLQARLMSQALRKLTASINKSHTMVIFINQIRMK 159


>gi|311337027|gb|ADP89904.1| recombination protein RecA [Bradyrhizobium pachyrhizi]
          Length = 162

 Score =  269 bits (687), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 124/161 (77%), Positives = 148/161 (91%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +SSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE
Sbjct: 2   VETISSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E
Sbjct: 62  HALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVRSGAVDVLVIDSVAALVPKAELE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RM
Sbjct: 122 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRM 162


>gi|117667636|gb|ABK55864.1| recombinase A [Streptomyces venezuelae]
          Length = 168

 Score =  269 bits (687), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 127/168 (75%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           DIALG+GG P+GR+VEIYGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KL
Sbjct: 1   DIALGVGGLPRGRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|289812929|gb|ADD20925.1| recombinase A [Bradyrhizobium sp. CCBAU 23160]
          Length = 165

 Score =  269 bits (687), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 122/162 (75%), Positives = 149/162 (91%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VS+GSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE
Sbjct: 3   VETVSTGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGA+D++V+DSVAAL P+AE+E
Sbjct: 63  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALVPKAELE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 123 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 164


>gi|112806730|emb|CAJ28015.1| recombination protein [Aminobacter aminovorans]
          Length = 162

 Score =  269 bits (687), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 128/163 (78%), Positives = 149/163 (91%), Gaps = 1/163 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           SQI+R +GKG+IM+LG+   + E I  VS+GSLGLDIALG+GG P+GRI+EIYGPESSGK
Sbjct: 1   SQIERAFGKGSIMRLGANEQVVE-IGTVSTGSLGLDIALGVGGLPRGRIIEIYGPESSGK 59

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D L
Sbjct: 60  TTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTL 119

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           VRSGA+D++V+DSVAALTPRAEIEG+MGESLPG+QARLMSQAL
Sbjct: 120 VRSGAIDVLVVDSVAALTPRAEIEGEMGESLPGLQARLMSQAL 162


>gi|117667710|gb|ABK55901.1| recombinase A [Streptomyces fulvorobeus]
          Length = 168

 Score =  269 bits (687), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 124/168 (73%), Positives = 149/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GGT AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKLGGTVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLIRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|289812955|gb|ADD20937.1| recombinase A [Bradyrhizobium sp. CCBAU 61434]
          Length = 163

 Score =  269 bits (687), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 122/162 (75%), Positives = 149/162 (91%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VS+GSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE
Sbjct: 2   VETVSTGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGA+D++V+DSVAAL P+AE+E
Sbjct: 62  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALVPKAELE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 122 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 163


>gi|117667604|gb|ABK55848.1| recombinase A [Streptomyces californicus]
 gi|117667706|gb|ABK55899.1| recombinase A [Streptomyces floridae]
 gi|157000381|gb|ABV00490.1| recombinase A [Streptomyces puniceus]
          Length = 168

 Score =  268 bits (686), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 124/168 (73%), Positives = 150/168 (89%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GG+ AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQRLGGSVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|117667708|gb|ABK55900.1| recombinase A [Streptomyces mauvecolor]
          Length = 168

 Score =  268 bits (686), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 125/168 (74%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGAVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|213852305|ref|ZP_03381837.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
          Length = 215

 Score =  268 bits (686), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 116/188 (61%), Positives = 164/188 (87%)

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RM
Sbjct: 1   MDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 60

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++TRVKVVKNK+A+PFKQ
Sbjct: 61  KIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSETRVKVVKNKIAAPFKQ 120

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
            EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+ N+  +L+EN   A+
Sbjct: 121 AEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATTWLKENPATAK 180

Query: 326 NIESLLRQ 333
            IE  +R+
Sbjct: 181 EIEKRVRE 188


>gi|163960873|gb|ABY49981.1| recombination protein A [Rhizobium sp. CCBAU 85011]
          Length = 159

 Score =  268 bits (686), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 127/155 (81%), Positives = 145/155 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 4   IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIE
Sbjct: 64  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           G+MG+SLPG+QARLMSQALRKLT+SIS+S  +++F
Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIF 158


>gi|296516856|emb|CBM35919.1| recombination protein A [Bradyrhizobium sp. CAH40]
          Length = 168

 Score =  268 bits (686), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 125/160 (78%), Positives = 148/160 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 9   IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 68

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 69  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 128

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+R
Sbjct: 129 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIR 168


>gi|318084972|gb|ADV39376.1| recombinase A [Streptomyces tauricus]
          Length = 168

 Score =  268 bits (686), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 124/168 (73%), Positives = 149/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD++NL++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIENLILSQPDNGEQALEIVDMLIRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|117667700|gb|ABK55896.1| recombinase A [Streptomyces tanashiensis]
 gi|157000379|gb|ABV00489.1| recombinase A [Streptomyces pluricolorescens]
 gi|220960968|gb|ACL92950.1| recombinase A [Streptomyces hygroscopicus subsp. angustmyceticus]
 gi|220960970|gb|ACL92951.1| recombinase A [Streptomyces noursei]
 gi|220961004|gb|ACL92968.1| recombinase A [Streptomyces coerulescens]
 gi|220961076|gb|ACL93004.1| recombinase A [Streptomyces sclerotialus]
 gi|318084962|gb|ADV39371.1| recombinase A [Streptomyces hygroscopicus subsp. ossamyceticus]
 gi|318084964|gb|ADV39372.1| recombinase A [Streptomyces torulosus]
          Length = 168

 Score =  268 bits (686), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 126/168 (75%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VEIYGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|117667610|gb|ABK55851.1| recombinase A [Streptomyces vinaceus]
 gi|117667612|gb|ABK55852.1| recombinase A [Streptomyces galilaeus]
 gi|117667624|gb|ABK55858.1| recombinase A [Streptomyces exfoliatus]
 gi|117667662|gb|ABK55877.1| recombinase A [Streptomyces argenteolus]
 gi|117667686|gb|ABK55889.1| recombinase A [Streptomyces albus]
 gi|157000365|gb|ABV00482.1| recombinase A [Streptomyces globisporus subsp. globisporus]
 gi|220960978|gb|ACL92955.1| recombinase A [Streptomyces sioyaensis]
 gi|220961082|gb|ACL93007.1| recombinase A [Streptomyces canescens]
 gi|220961084|gb|ACL93008.1| recombinase A [Streptomyces champavatii]
 gi|220961088|gb|ACL93010.1| recombinase A [Streptomyces felleus]
 gi|220961090|gb|ACL93011.1| recombinase A [Streptomyces globisporus subsp. caucasicus]
 gi|220961092|gb|ACL93012.1| recombinase A [Streptomyces limosus]
 gi|220961094|gb|ACL93013.1| recombinase A [Streptomyces odorifer]
 gi|220961096|gb|ACL93014.1| recombinase A [Streptomyces sampsonii]
 gi|220961098|gb|ACL93015.1| recombinase A [Streptomyces coelicolor]
 gi|220961100|gb|ACL93016.1| recombinase A [Streptomyces albidoflavus]
          Length = 168

 Score =  268 bits (686), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 126/168 (75%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           DIALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KL
Sbjct: 1   DIALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|112806724|emb|CAJ28012.1| recombination protein [Mesorhizobium huakuii]
 gi|112806726|emb|CAJ28013.1| recombination protein [Mesorhizobium loti]
 gi|116486987|emb|CAJ38866.1| recombination protein [Mesorhizobium sp. Cc3]
 gi|116486989|emb|CAJ38867.1| recombination protein [Mesorhizobium sp. Ca004]
          Length = 162

 Score =  268 bits (686), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 127/163 (77%), Positives = 149/163 (91%), Gaps = 1/163 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           SQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGK
Sbjct: 1   SQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGK 59

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D L
Sbjct: 60  TTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTL 119

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           VRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQAL
Sbjct: 120 VRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQAL 162


>gi|158905837|gb|ABW82568.1| RecA [Bradyrhizobiaceae bacterium NS20]
          Length = 167

 Score =  268 bits (686), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 124/161 (77%), Positives = 148/161 (91%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           EVVSSGSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALH +A++QK GG CAFVDAEH
Sbjct: 1   EVVSSGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHCVAEAQKKGGICAFVDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGV++  LLISQPD GEQALEI D LVRSGAVD+++IDSVAAL PRAE+EG
Sbjct: 61  ALDPVYARKLGVNVDELLISQPDHGEQALEIADTLVRSGAVDVLIIDSVAALVPRAELEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           +MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 161


>gi|117667676|gb|ABK55884.1| recombinase A [Streptomyces aureus]
          Length = 168

 Score =  268 bits (686), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 124/168 (73%), Positives = 149/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|117667656|gb|ABK55874.1| recombinase A [Streptomyces cyaneus]
 gi|157000357|gb|ABV00478.1| recombinase A [Streptomyces clavifer]
 gi|157000385|gb|ABV00492.1| recombinase A [Streptomyces rubiginosohelvolus]
 gi|318084982|gb|ADV39381.1| recombinase A [Streptomyces scabiei]
 gi|318084992|gb|ADV39386.1| recombinase A [Streptomyces europaeiscabiei]
 gi|325551434|gb|ADZ28558.1| recombinase A [Streptomyces kishiwadensis]
          Length = 168

 Score =  268 bits (686), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 125/168 (74%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|163960847|gb|ABY49968.1| recombination protein A [Rhizobium gallicum]
 gi|163960867|gb|ABY49978.1| recombination protein A [Rhizobium mongolense]
          Length = 158

 Score =  268 bits (685), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 127/155 (81%), Positives = 145/155 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 4   IETISTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE
Sbjct: 64  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           G+MG+SLPG+QARLMSQALRKLT+SIS+S  +++F
Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIF 158


>gi|298566890|gb|ADI86521.1| recombination protein A [Sinorhizobium fredii]
          Length = 158

 Score =  268 bits (685), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 125/158 (79%), Positives = 147/158 (93%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD 
Sbjct: 1   SGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG+
Sbjct: 61  VYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELEGEMGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 ALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 158


>gi|226934320|gb|ACO92350.1| recombination protein A [Rhizobium sp. R21]
          Length = 161

 Score =  268 bits (685), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 130/161 (80%), Positives = 148/161 (91%), Gaps = 1/161 (0%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99
           SI E IE + +GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CA
Sbjct: 2   SIVE-IETIPTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICA 60

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTP
Sbjct: 61  FVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTP 120

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           RAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FI
Sbjct: 121 RAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFI 161


>gi|148978184|ref|ZP_01814714.1| recombinase A [Vibrionales bacterium SWAT-3]
 gi|145962606|gb|EDK27882.1| recombinase A [Vibrionales bacterium SWAT-3]
          Length = 207

 Score =  268 bits (685), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 127/200 (63%), Positives = 164/200 (82%), Gaps = 8/200 (4%)

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG
Sbjct: 1   MVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIG 60

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ E 
Sbjct: 61  VMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQAET 120

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
            I+YG+G +  GELIDLGVK  +VDK+GAW+S+KG ++GQG+ NS  FLREN EIA  ++
Sbjct: 121 QILYGQGFNREGELIDLGVKNKLVDKAGAWYSYKGDKIGQGKSNSCKFLRENPEIALELD 180

Query: 329 SLLRQNAGLVADSLLQEPAI 348
           + LR+        LL  PA+
Sbjct: 181 TKLRE--------LLLTPAV 192


>gi|227183999|gb|ACP20118.1| RecA [Bradyrhizobium sp. ORS305]
          Length = 174

 Score =  268 bits (685), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 128/175 (73%), Positives = 155/175 (88%), Gaps = 1/175 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG++M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTT
Sbjct: 1   IERQFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVR
Sbjct: 60  LALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           SGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 SGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 174


>gi|220960998|gb|ACL92965.1| recombinase A [Streptomyces albulus]
 gi|318084950|gb|ADV39365.1| recombinase A [Streptomyces gobitricini]
 gi|318084966|gb|ADV39373.1| recombinase A [Streptomyces luridus]
          Length = 168

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 126/168 (75%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VEIYGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAQKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|157000369|gb|ABV00484.1| recombinase A [Streptomyces griseorubiginosus]
 gi|318084986|gb|ADV39383.1| recombinase A [Streptomyces scabiei]
 gi|318085000|gb|ADV39390.1| recombinase A [Streptomyces niveiscabiei]
          Length = 168

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 125/168 (74%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GG  AFVDAEHALD  YARKL
Sbjct: 1   DVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQRAGGQVAFVDAEHALDPEYARKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDVDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|51235257|gb|AAT98473.1| recombination protein A [Rhizobium huautlense]
          Length = 160

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 133/161 (82%), Positives = 147/161 (91%), Gaps = 1/161 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  +I E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSSENIVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SVAALTPRAEIEG+MG+SLP  QARLMSQALRKLT+SIS+S
Sbjct: 120 SVAALTPRAEIEGEMGDSLPASQARLMSQALRKLTASISKS 160


>gi|117667674|gb|ABK55883.1| recombinase A [Streptomyces laceyi]
 gi|220960980|gb|ACL92956.1| recombinase A [Streptomyces caeruleus]
          Length = 168

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 125/168 (74%), Positives = 149/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GGT AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQRAGGTVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ +LL+SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDSLLLSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|330369298|gb|AEC12039.1| recombination protein A [Bradyrhizobium sp. CCBAU 23332]
          Length = 158

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 124/158 (78%), Positives = 147/158 (93%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +
Sbjct: 1   GSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPV 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++
Sbjct: 61  YARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDA 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIG
Sbjct: 121 LPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIG 158


>gi|117667620|gb|ABK55856.1| recombinase A [Streptomyces atroolivaceus]
 gi|117667628|gb|ABK55860.1| recombinase A [Streptomyces anulatus]
 gi|117667640|gb|ABK55866.1| recombinase A [Streptomyces cyaneofuscatus]
 gi|117667664|gb|ABK55878.1| recombinase A [Streptomyces mutomycini]
 gi|117667668|gb|ABK55880.1| recombinase A [Streptomyces praecox]
 gi|117667688|gb|ABK55890.1| recombinase A [Streptomyces griseolus]
 gi|157000353|gb|ABV00476.1| recombinase A [Streptomyces griseus]
 gi|157000373|gb|ABV00486.1| recombinase A [Streptomyces nitrosporeus]
 gi|157000375|gb|ABV00487.1| recombinase A [Streptomyces olivoviridis]
          Length = 168

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 124/168 (73%), Positives = 149/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKLGGSVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|227183993|gb|ACP20115.1| RecA [Bradyrhizobium sp. ORS301]
 gi|227184023|gb|ACP20130.1| RecA [Bradyrhizobium sp. ORS354]
          Length = 174

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 128/175 (73%), Positives = 155/175 (88%), Gaps = 1/175 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG++M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTT
Sbjct: 1   IERQFGKGSVMKLGKSDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVR
Sbjct: 60  LALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           SGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 SGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 174


>gi|325512763|gb|ADZ23570.1| RecA [Sinorhizobium fredii]
          Length = 157

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 132/158 (83%), Positives = 146/158 (92%), Gaps = 1/158 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           SVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SI
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASI 157


>gi|325512815|gb|ADZ23596.1| RecA [Bradyrhizobium sp. CCBAU 45515]
          Length = 159

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 124/158 (78%), Positives = 147/158 (93%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD
Sbjct: 1   SSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG
Sbjct: 61  PVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           ++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 DALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 158


>gi|156766411|gb|ABU94840.1| recombination protein A [Bradyrhizobium sp. Pter4]
 gi|156766427|gb|ABU94848.1| recombination protein A [Bradyrhizobium sp. Ec3.3]
 gi|156766437|gb|ABU94853.1| recombination protein A [Bradyrhizobium sp. tpar1.1]
 gi|156766465|gb|ABU94867.1| recombination protein A [Bradyrhizobium sp. Albi6]
          Length = 170

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 129/171 (75%), Positives = 153/171 (89%), Gaps = 1/171 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKSDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAF+DAEHALD +YARKLGV++ +LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDDLLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D++VIDSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 DVMVIDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 170


>gi|50982239|gb|AAT91785.1| recombination protein A [Bradyrhizobium sp. IRBG127]
 gi|50982241|gb|AAT91786.1| recombination protein A [Bradyrhizobium sp. IRBG231]
          Length = 170

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 124/159 (77%), Positives = 147/159 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 12  VETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 71

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 72  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 131

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G+MGESLPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 132 GEMGESLPGLQARLMSQALRKLTASINKSNTMVIFINQI 170


>gi|163960892|gb|ABY49990.1| recombination protein A [Mesorhizobium loti]
          Length = 160

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 125/157 (79%), Positives = 146/157 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE V +GSLGLDIALG+GG P+GRIV+IYGPESSGKTTLALHT+A++QK GG CAFVDA+
Sbjct: 4   IETVPTGSLGLDIALGVGGLPRGRIVKIYGPESSGKTTLALHTVAEAQKKGGICAFVDAK 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIE
Sbjct: 64  HALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           G+MG+SLPG+QARLMSQALRKLT+SISRS  +++FI 
Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFIT 160


>gi|318084958|gb|ADV39369.1| recombinase A [Streptomyces lavendofoliae]
          Length = 168

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 125/168 (74%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAQKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|326328142|gb|ADZ54138.1| recombination protein A [Bradyrhizobium sp. CCBAU 15768]
          Length = 158

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 124/158 (78%), Positives = 147/158 (93%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD 
Sbjct: 1   SGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG+
Sbjct: 61  VYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 ALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 158


>gi|229458680|gb|ACQ65997.1| recombinase A [Bradyrhizobium sp. SEMIA 6440]
          Length = 175

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 128/175 (73%), Positives = 153/175 (87%), Gaps = 1/175 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG      + +E VSSGSLGLDIALG  G PKGR VEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGFAGLPKGRFVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++
Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175


>gi|207080795|gb|ACI22741.1| RecA [Sinorhizobium sp. J3-46]
          Length = 160

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 130/160 (81%), Positives = 147/160 (91%), Gaps = 1/160 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG + SI E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL T+
Sbjct: 2   KGSVMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTV 60

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 61  AEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDV 120

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           +V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+
Sbjct: 121 LVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTA 160


>gi|207080799|gb|ACI22743.1| RecA [Sinorhizobium sp. J3-39]
 gi|207080801|gb|ACI22744.1| RecA [Sinorhizobium sp. J3-44]
 gi|207080815|gb|ACI22751.1| RecA [Sinorhizobium sp. J3-47-2]
 gi|207080829|gb|ACI22758.1| RecA [Sinorhizobium sp. J3-N55]
          Length = 161

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 130/160 (81%), Positives = 147/160 (91%), Gaps = 1/160 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG + SI E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL T+
Sbjct: 3   KGSVMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTV 61

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 62  AEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDV 121

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           +V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+
Sbjct: 122 LVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTA 161


>gi|190571772|ref|YP_001966451.1| RecAlp [Lactococcus lactis]
 gi|3219859|sp|Q59486|RECA2_LACLA RecName: Full=Protein RecA, plasmid; AltName: Full=Recombinase A;
           AltName: Full=recaLP
 gi|1039478|gb|AAB52384.1| RecA(LP) [Lactococcus lactis]
 gi|108736171|gb|ABG00300.1| RecAlp [Lactococcus lactis]
          Length = 341

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 134/323 (41%), Positives = 215/323 (66%), Gaps = 5/323 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K  A+  A   I++ +G   I  L  +G   + ++ + SG L LD A+GIGG+PKGR++
Sbjct: 19  EKKLAILKATQSIEKKFGSNTI--LNEEGKASQHVQALPSGILSLDCAIGIGGYPKGRLI 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E++G ESSGKTT+AL  +A++QK GG  A++DAE++LD  YA  LGV   +L+ +QPDTG
Sbjct: 77  ELFGAESSGKTTVALQAVAETQKNGGYVAYIDAENSLDIEYAENLGVKSDSLIFAQPDTG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+A  + +  VR+GA D+IV+DSVAALTP +EI+   G  +PG QA++MS+ L +L   +
Sbjct: 137 EEAFYMINEFVRTGAFDLIVVDSVAALTPASEID---GVKMPGQQAKMMSEQLSQLVGKV 193

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K +++FINQ+R  +  +F + ETT GG+ALKFYSSVR++++    IKD     G +T
Sbjct: 194 NQTKTVIIFINQIRSTMSGLFLNKETTPGGSALKFYSSVRIEVKSGEKIKDGIDTIGKKT 253

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
            +  VKNK++SP+K+     ++G+G S   +++   ++  +V K G W+SF GQ+LG+G 
Sbjct: 254 TLHTVKNKVSSPYKKPTVINIFGDGFSQEIDVVTTALQLGVVKKLGEWYSFNGQKLGRGI 313

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
              K +L  +  +   +++L R+
Sbjct: 314 FGVKEYLSHHPSVFNALDNLTRE 336


>gi|160947824|gb|ABX54721.1| RecA protein [Rhizobium leguminosarum]
 gi|160947832|gb|ABX54725.1| RecA protein [Rhizobium leguminosarum]
 gi|160947840|gb|ABX54729.1| RecA protein [Rhizobium leguminosarum]
 gi|160947850|gb|ABX54734.1| RecA protein [Rhizobium leguminosarum]
          Length = 168

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 130/162 (80%), Positives = 150/162 (92%), Gaps = 1/162 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 8   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 66

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 67  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 126

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SL
Sbjct: 127 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSL 168


>gi|117667638|gb|ABK55865.1| recombinase A [Streptomyces virginiae]
          Length = 168

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 126/168 (75%), Positives = 147/168 (87%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           DIALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GGT AFVDAEHALD  YA+ L
Sbjct: 1   DIALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGTVAFVDAEHALDPEYAKAL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD  NL++SQPDTGEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDNLILSQPDTGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+T ++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITGALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|117667616|gb|ABK55854.1| recombinase A [Streptomyces graminofaciens]
 gi|117667672|gb|ABK55882.1| recombinase A [Streptomyces peucetius]
 gi|157000371|gb|ABV00485.1| recombinase A [Streptomyces halstedii]
          Length = 168

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 124/168 (73%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGAVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPKAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|51235265|gb|AAT98477.1| recombination protein A [Mesorhizobium plurifarium]
          Length = 160

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 127/161 (78%), Positives = 148/161 (91%), Gaps = 1/161 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++Q
Sbjct: 1   MRLGANEKVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SVAALTPRAEIEG+MG++LPG+QARLMSQALRKLT+SISRS
Sbjct: 120 SVAALTPRAEIEGEMGDALPGLQARLMSQALRKLTASISRS 160


>gi|299737704|gb|ADJ37175.1| recombinase A [Bradyrhizobium yuanmingense]
 gi|299737706|gb|ADJ37176.1| recombinase A [Bradyrhizobium yuanmingense]
 gi|299737710|gb|ADJ37178.1| recombinase A [Bradyrhizobium yuanmingense]
          Length = 159

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 124/158 (78%), Positives = 147/158 (93%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHAL
Sbjct: 2   VSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+M
Sbjct: 62  DPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEM 121

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           G++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RM
Sbjct: 122 GDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRM 159


>gi|291246086|gb|ADD85171.1| RecA [Borrelia duttonii]
          Length = 182

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 122/177 (68%), Positives = 157/177 (88%)

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           GIGG+P+GR+VEI+GPESSGKTTL L  IA+ QKTGG  AF+DAEHALD +YAR LGV++
Sbjct: 1   GIGGYPRGRVVEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNI 60

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
             L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAALTP+AEI+G+MG++  G+QARLM
Sbjct: 61  NELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALTPQAEIDGEMGDTQIGLQARLM 120

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           S+ALRK+T+ +S+S   ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V
Sbjct: 121 SKALRKITAILSKSNTCIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKV 177


>gi|29651987|gb|AAO87656.1| RecA [Listeria monocytogenes]
 gi|29652204|gb|AAO87763.1| RecA [Listeria monocytogenes]
 gi|29652230|gb|AAO87776.1| RecA [Listeria monocytogenes]
          Length = 188

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 128/190 (67%), Positives = 158/190 (83%), Gaps = 2/190 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA
Sbjct: 1   GSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRSGAVD++
Sbjct: 59  EVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDML 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+R K+GV
Sbjct: 119 VIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVGV 178

Query: 210 MFGSPETTTG 219
           MFG+PE T G
Sbjct: 179 MFGNPEITPG 188


>gi|51235271|gb|AAT98480.1| recombination protein A [Mesorhizobium plurifarium]
 gi|62548807|gb|AAX86855.1| RecA [Mesorhizobium plurifarium]
          Length = 160

 Score =  267 bits (683), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 127/161 (78%), Positives = 148/161 (91%), Gaps = 1/161 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++Q
Sbjct: 1   MRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SVAALTPRAEIEG+MG++LPG+QARLMSQALRKLT+SISRS
Sbjct: 120 SVAALTPRAEIEGEMGDALPGLQARLMSQALRKLTASISRS 160


>gi|156766419|gb|ABU94844.1| recombination protein A [Bradyrhizobium sp. Pter17]
 gi|156766431|gb|ABU94850.1| recombination protein A [Bradyrhizobium sp. Pe1.3]
          Length = 170

 Score =  267 bits (683), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 129/171 (75%), Positives = 152/171 (88%), Gaps = 1/171 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D++VIDSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 DVMVIDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 170


>gi|299737702|gb|ADJ37174.1| recombinase A [Bradyrhizobium yuanmingense]
 gi|299737718|gb|ADJ37182.1| recombinase A [Bradyrhizobium sp. CCBAU 051107]
 gi|299737722|gb|ADJ37184.1| recombinase A [Bradyrhizobium sp. CCBAU 45384]
          Length = 158

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 124/158 (78%), Positives = 147/158 (93%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHAL
Sbjct: 1   VSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+M
Sbjct: 61  DPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           G++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RM
Sbjct: 121 GDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRM 158


>gi|220961006|gb|ACL92969.1| recombinase A [Streptomyces albospinus]
          Length = 168

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 125/168 (74%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD  YARKL
Sbjct: 1   DVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYARKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD   L++SQPD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDALILSQPDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|318084976|gb|ADV39378.1| recombinase A [Streptomyces acidiscabies]
          Length = 168

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 124/168 (73%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GG  AF+DAEHALD  YARKL
Sbjct: 1   DVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQRAGGQVAFIDAEHALDPEYARKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|213012378|gb|ACJ38755.1| recombination-repair protein [Vibrio fortis]
          Length = 169

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 122/169 (72%), Positives = 150/169 (88%)

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE
Sbjct: 1   HALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEIE 60

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 61  GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 120

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           FY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ E  I+YG
Sbjct: 121 FYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQAETQILYG 169


>gi|318084952|gb|ADV39366.1| recombinase A [Streptomyces roseolilacinus]
          Length = 168

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 125/168 (74%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VEIYGPESSGKTTL LH +A +QK GG  AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGVPRGRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|146432128|gb|ABQ41046.1| recombination-repair protein [Vibrio campbellii]
          Length = 173

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 120/173 (69%), Positives = 152/173 (87%)

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           A +DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALT
Sbjct: 1   ALIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALT 60

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           P+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTT
Sbjct: 61  PKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTT 120

Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           GGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IM
Sbjct: 121 GGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIM 173


>gi|117667634|gb|ABK55863.1| recombinase A [Streptomyces kanamyceticus]
          Length = 168

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 124/168 (73%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GG  AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQRAGGAVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|318084946|gb|ADV39363.1| recombinase A [Streptomyces diastatochromogenes]
          Length = 168

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 125/168 (74%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VEIYGPESSGKTTL LH +A +QK GG  AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFIDAEHALDPEYAQKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|50982205|gb|AAT91768.1| recombination protein A [Bradyrhizobium genosp. beta]
 gi|50982219|gb|AAT91775.1| recombination protein A [Bradyrhizobium sp. CICS70]
 gi|190612118|gb|ACE80493.1| recombination protein A [Bradyrhizobium liaoningense]
 gi|190612124|gb|ACE80496.1| recombination protein A [Bradyrhizobium liaoningense]
 gi|190612126|gb|ACE80497.1| recombination protein A [Bradyrhizobium liaoningense]
 gi|190612128|gb|ACE80498.1| recombination protein A [Bradyrhizobium liaoningense]
 gi|190612130|gb|ACE80499.1| recombination protein A [Bradyrhizobium liaoningense]
 gi|190612132|gb|ACE80500.1| recombination protein A [Bradyrhizobium liaoningense]
 gi|190612134|gb|ACE80501.1| recombination protein A [Bradyrhizobium liaoningense]
 gi|190612136|gb|ACE80502.1| recombination protein A [Bradyrhizobium liaoningense]
 gi|190612138|gb|ACE80503.1| recombination protein A [Bradyrhizobium liaoningense]
          Length = 170

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 125/159 (78%), Positives = 147/159 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 12  IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 71

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E
Sbjct: 72  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELE 131

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 132 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 170


>gi|318084942|gb|ADV39361.1| recombinase A [Streptomyces cinereoruber subsp. fructofermentans]
          Length = 168

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 124/168 (73%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GG  AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQRAGGQVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|117667660|gb|ABK55876.1| recombinase A [Streptomyces cirratus]
 gi|117667670|gb|ABK55881.1| recombinase A [Streptomyces subrutilus]
 gi|117667698|gb|ABK55895.1| recombinase A [Streptomyces nojiriensis]
 gi|117667702|gb|ABK55897.1| recombinase A [Streptomyces spororaveus]
 gi|220961080|gb|ACL93006.1| recombinase A [Streptomyces albidoflavus]
          Length = 168

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 125/168 (74%), Positives = 147/168 (87%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           DIALG+GG P+GR++E+YGPESSGKTTL LH +A +QK GGT AFVDAEHALD  YA+ L
Sbjct: 1   DIALGVGGLPRGRVIEVYGPESSGKTTLTLHAVANAQKAGGTVAFVDAEHALDPEYAKAL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD  NL++SQPDTGEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDNLILSQPDTGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+T ++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITGALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|227183997|gb|ACP20117.1| RecA [Bradyrhizobium sp. ORS304]
 gi|227184003|gb|ACP20120.1| RecA [Bradyrhizobium sp. ORS309]
 gi|227184027|gb|ACP20132.1| RecA [Bradyrhizobium sp. ORS358]
          Length = 174

 Score =  267 bits (682), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 127/175 (72%), Positives = 154/175 (88%), Gaps = 1/175 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG++M+LG      + +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTT
Sbjct: 1   IERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVR
Sbjct: 60  LALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           SGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 SGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 174


>gi|112806722|emb|CAJ28011.1| recombination protein [Mesorhizobium chacoense]
          Length = 162

 Score =  267 bits (682), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 127/163 (77%), Positives = 149/163 (91%), Gaps = 1/163 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           SQI+R +GKG+IM+LG+   + E I  VS+GSLGLDIALG+GG P+GRI+EIYGPESSGK
Sbjct: 1   SQIERAFGKGSIMRLGANEQVVE-IGTVSTGSLGLDIALGVGGLPRGRIIEIYGPESSGK 59

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D L
Sbjct: 60  TTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTL 119

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           VRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQAL
Sbjct: 120 VRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQAL 162


>gi|299737726|gb|ADJ37186.1| recombinase A [Bradyrhizobium sp. CCBAU 051011]
          Length = 159

 Score =  267 bits (682), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 122/159 (76%), Positives = 147/159 (92%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD 
Sbjct: 1   SGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YARKLGV++  LLISQPDTGEQALEI D LVRSGA+D++V+DSVAAL P+AE+EG+MG+
Sbjct: 61  VYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALVPKAELEGEMGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIG
Sbjct: 121 ALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIG 159


>gi|326407912|gb|ADZ64982.1| recombinase A [Lactococcus lactis subsp. lactis CV56]
          Length = 341

 Score =  267 bits (682), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 133/323 (41%), Positives = 215/323 (66%), Gaps = 5/323 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K  A+  A   I++ +G   I  L  +G   + ++ + SG L LD A+GIGG+PKGR++
Sbjct: 19  EKKLAILKATQSIEKKFGSNTI--LNEEGKASQHVQALPSGILSLDCAIGIGGYPKGRLI 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E++G ESSGKTT+AL  +A++QK GG  A++DAE++LD  YA  LGV   +L+ +QPDTG
Sbjct: 77  ELFGAESSGKTTVALQAVAETQKNGGYVAYIDAENSLDIEYAENLGVKSNSLIFAQPDTG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+A  + +  VR+GA D+IV+DSVAALTP +EI+   G  +PG QA++MS+ L +L   +
Sbjct: 137 EEAFYMINEFVRTGAFDLIVVDSVAALTPASEID---GVKMPGQQAKMMSEQLSQLVGKV 193

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K +++FINQ+R  +  +F + ETT GG+ALKFYSSVR++++    IKD     G +T
Sbjct: 194 NQTKTVIIFINQIRSTMSGLFLNKETTPGGSALKFYSSVRIEVKSGEKIKDGIDTIGKKT 253

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
            +  VKNK+++P+K+     ++G+G S   +++   ++  +V K G W+SF GQ+LG+G 
Sbjct: 254 TLHTVKNKVSAPYKKPTVINIFGDGFSQEIDVVTTALQLGVVKKLGEWYSFNGQKLGRGI 313

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
              K +L  +  +   +++L R+
Sbjct: 314 FGVKEYLSHHPSVFNALDNLTRE 336


>gi|220961000|gb|ACL92966.1| recombinase A [Streptomyces caniferus]
 gi|220961030|gb|ACL92981.1| recombinase A [Streptomyces hygroscopicus subsp. glebosus]
 gi|220961040|gb|ACL92986.1| recombinase A [Streptomyces platensis]
 gi|220961044|gb|ACL92988.1| recombinase A [Streptomyces libani subsp. rufus]
          Length = 168

 Score =  267 bits (682), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 124/168 (73%), Positives = 149/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD  +L++SQPD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDSLILSQPDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|301601079|dbj|BAJ13228.1| RecA [Agrobacterium vitis]
          Length = 160

 Score =  267 bits (682), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 131/160 (81%), Positives = 146/160 (91%), Gaps = 1/160 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG+   I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++
Sbjct: 1   IMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEA 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VI
Sbjct: 60  QKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVI 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           DSVAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT SIS
Sbjct: 120 DSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKLTGSIS 159


>gi|50982183|gb|AAT91757.1| recombination protein A [Bradyrhizobium genosp. beta]
 gi|50982199|gb|AAT91765.1| recombination protein A [Bradyrhizobium genosp. beta]
 gi|50982225|gb|AAT91778.1| recombination protein A [Bradyrhizobium liaoningense bv.
           glycinearum]
 gi|50982245|gb|AAT91788.1| recombination protein A [Bradyrhizobium liaoningense]
 gi|52550817|gb|AAU84454.1| recombination protein A [Bradyrhizobium genosp. beta]
          Length = 170

 Score =  267 bits (682), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 125/159 (78%), Positives = 147/159 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 12  IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 71

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E
Sbjct: 72  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELE 131

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 132 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 170


>gi|29651979|gb|AAO87652.1| RecA [Listeria monocytogenes]
 gi|29651995|gb|AAO87660.1| RecA [Listeria monocytogenes]
 gi|29652126|gb|AAO87724.1| RecA [Listeria monocytogenes]
          Length = 189

 Score =  267 bits (682), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 127/191 (66%), Positives = 160/191 (83%), Gaps = 2/191 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MRMKIGVMFGS 213
           +R K+GVMFG+
Sbjct: 179 IREKVGVMFGN 189


>gi|289190612|gb|ADC93411.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-7]
          Length = 169

 Score =  266 bits (681), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 125/159 (78%), Positives = 147/159 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 11  IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 70

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E
Sbjct: 71  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELE 130

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169


>gi|50982227|gb|AAT91779.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|50982229|gb|AAT91780.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|50982231|gb|AAT91781.1| recombination protein A [Bradyrhizobium genosp. alpha]
 gi|50982243|gb|AAT91787.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190611980|gb|ACE80424.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190611982|gb|ACE80425.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190611984|gb|ACE80426.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190611986|gb|ACE80427.1| recombination protein A [Bradyrhizobium sp. BuCeR1]
 gi|190611988|gb|ACE80428.1| recombination protein A [Bradyrhizobium sp. BuCeR2]
 gi|190611990|gb|ACE80429.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190611992|gb|ACE80430.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190611994|gb|ACE80431.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612004|gb|ACE80436.1| recombination protein A [Bradyrhizobium liaoningense]
 gi|190612010|gb|ACE80439.1| recombination protein A [Bradyrhizobium liaoningense]
 gi|190612012|gb|ACE80440.1| recombination protein A [Bradyrhizobium liaoningense]
 gi|190612014|gb|ACE80441.1| recombination protein A [Bradyrhizobium liaoningense]
 gi|190612022|gb|ACE80445.1| recombination protein A [Bradyrhizobium elkanii]
 gi|190612028|gb|ACE80448.1| recombination protein A [Bradyrhizobium sp. BuNoG5]
 gi|190612038|gb|ACE80453.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612040|gb|ACE80454.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612042|gb|ACE80455.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612044|gb|ACE80456.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612046|gb|ACE80457.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612048|gb|ACE80458.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612050|gb|ACE80459.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612052|gb|ACE80460.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612054|gb|ACE80461.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612056|gb|ACE80462.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612058|gb|ACE80463.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612060|gb|ACE80464.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612062|gb|ACE80465.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612064|gb|ACE80466.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612066|gb|ACE80467.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612068|gb|ACE80468.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612070|gb|ACE80469.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612072|gb|ACE80470.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612074|gb|ACE80471.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612076|gb|ACE80472.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612078|gb|ACE80473.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612120|gb|ACE80494.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612122|gb|ACE80495.1| recombination protein A [Bradyrhizobium yuanmingense]
          Length = 170

 Score =  266 bits (681), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 124/159 (77%), Positives = 147/159 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 12  IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 71

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 72  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 131

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 132 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 170


>gi|50982177|gb|AAT91754.1| recombination protein A [Bradyrhizobium genosp. alpha bv.
           genistearum]
          Length = 170

 Score =  266 bits (681), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 124/159 (77%), Positives = 147/159 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 12  VEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 71

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E
Sbjct: 72  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELE 131

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 132 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 170


>gi|299737696|gb|ADJ37171.1| recombinase A [Bradyrhizobium liaoningense]
 gi|299737698|gb|ADJ37172.1| recombinase A [Bradyrhizobium liaoningense]
          Length = 157

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 124/157 (78%), Positives = 146/157 (92%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD 
Sbjct: 1   SGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG+
Sbjct: 61  VYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           +LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 ALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 157


>gi|117667606|gb|ABK55849.1| recombinase A [Streptomyces sindenensis]
          Length = 168

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 123/168 (73%), Positives = 150/168 (89%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GG+ AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQRQGGSVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ +L++SQPD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDSLILSQPDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|307343396|emb|CBJ18139.1| recombinase A [Micromonospora sp. GUI41]
          Length = 176

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 126/175 (72%), Positives = 149/175 (85%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD 
Sbjct: 2   TGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDP 61

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
            YA+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+
Sbjct: 62  EYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGD 121

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           S  G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALK
Sbjct: 122 SHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALK 176


>gi|298566918|gb|ADI86535.1| recombination protein A [Bradyrhizobium japonicum]
          Length = 158

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 124/157 (78%), Positives = 146/157 (92%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD 
Sbjct: 1   SGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG+
Sbjct: 61  VYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           +LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 ALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 157


>gi|289190616|gb|ADC93413.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-15]
          Length = 169

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 125/159 (78%), Positives = 147/159 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 11  IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 70

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E
Sbjct: 71  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELE 130

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169


>gi|51235263|gb|AAT98476.1| recombination protein A [Mesorhizobium plurifarium]
 gi|51235267|gb|AAT98478.1| recombination protein A [Mesorhizobium plurifarium]
 gi|51235269|gb|AAT98479.1| recombination protein A [Mesorhizobium plurifarium]
 gi|62548809|gb|AAX86856.1| RecA [Mesorhizobium plurifarium]
          Length = 160

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 128/161 (79%), Positives = 147/161 (91%), Gaps = 1/161 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG+     E IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++Q
Sbjct: 1   MRLGANEQAVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SVAALTPRAEIEG+MG++LPG+QARLMSQALRKLT+SISRS
Sbjct: 120 SVAALTPRAEIEGEMGDALPGLQARLMSQALRKLTASISRS 160


>gi|220960984|gb|ACL92958.1| recombinase A [Streptomyces nigrescens]
 gi|220960988|gb|ACL92960.1| recombinase A [Streptomyces tubercidicus]
 gi|220961052|gb|ACL92992.1| recombinase A [Streptomyces libani subsp. libani]
 gi|325551432|gb|ADZ28557.1| recombinase A [Streptomyces hygroscopicus subsp. angustmyceticus]
          Length = 168

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 123/168 (73%), Positives = 149/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR++E+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVIEVYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD  +L++SQPD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDSLILSQPDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|50982237|gb|AAT91784.1| recombination protein A [Bradyrhizobium sp. BTAi1]
          Length = 170

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 122/159 (76%), Positives = 147/159 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VS+GSLGLDIALGIGG PKGR++EIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 12  VETVSTGSLGLDIALGIGGLPKGRVIEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 71

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 72  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 131

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G+MGESLPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 132 GEMGESLPGLQARLMSQALRKLTASINKSHTMVIFINQI 170


>gi|289190622|gb|ADC93416.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-5]
 gi|289190648|gb|ADC93429.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-5]
 gi|289190656|gb|ADC93433.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-6]
 gi|289190680|gb|ADC93445.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-8]
 gi|289190684|gb|ADC93447.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-8]
          Length = 169

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 124/159 (77%), Positives = 147/159 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 11  IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 70

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 71  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 130

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169


>gi|325305322|gb|ADZ06009.1| RecA [Aeromonas veronii bv. sobria]
          Length = 161

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 124/161 (77%), Positives = 146/161 (90%)

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSV
Sbjct: 1   GKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSV 60

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSP
Sbjct: 61  AALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSP 120

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           ETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+TRVKVV
Sbjct: 121 ETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNETRVKVV 161


>gi|227184019|gb|ACP20128.1| RecA [Bradyrhizobium sp. ORS336]
          Length = 174

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 126/175 (72%), Positives = 154/175 (88%), Gaps = 1/175 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG++M+LG      + +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTT
Sbjct: 1   IERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVR
Sbjct: 60  LALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIXELLISQPDTGEQALEICDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           SGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 SGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 174


>gi|29652049|gb|AAO87687.1| RecA [Listeria monocytogenes]
 gi|29652068|gb|AAO87696.1| RecA [Listeria monocytogenes]
          Length = 193

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 128/194 (65%), Positives = 161/194 (82%), Gaps = 2/194 (1%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YG
Sbjct: 2   ALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQAL
Sbjct: 60  PESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK
Sbjct: 120 EIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSK 179

Query: 195 CILVFINQMRMKIG 208
            I +FINQ+R K+G
Sbjct: 180 TIAIFINQIREKVG 193


>gi|29652017|gb|AAO87671.1| RecA [Listeria monocytogenes]
          Length = 185

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 127/187 (67%), Positives = 157/187 (83%), Gaps = 2/187 (1%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH I
Sbjct: 1   KGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRSGAVD+
Sbjct: 59  AEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDM 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+R K+G
Sbjct: 119 LVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVG 178

Query: 209 VMFGSPE 215
           VMFG+PE
Sbjct: 179 VMFGNPE 185


>gi|289190618|gb|ADC93414.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-9]
          Length = 169

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 125/159 (78%), Positives = 147/159 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 11  IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 70

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E
Sbjct: 71  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELE 130

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169


>gi|325650634|emb|CBY89500.1| RecA protein [Rhizobium leguminosarum]
          Length = 183

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 129/161 (80%), Positives = 149/161 (92%), Gaps = 1/161 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLP
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLP 160


>gi|325305324|gb|ADZ06010.1| RecA [Aeromonas veronii bv. sobria]
 gi|325305326|gb|ADZ06011.1| RecA [Aeromonas veronii bv. sobria]
 gi|325305332|gb|ADZ06014.1| RecA [Aeromonas veronii bv. sobria]
 gi|325305334|gb|ADZ06015.1| RecA [Aeromonas veronii bv. veronii]
 gi|325305340|gb|ADZ06018.1| RecA [Aeromonas veronii bv. sobria]
 gi|325305342|gb|ADZ06019.1| RecA [Aeromonas veronii bv. sobria]
 gi|325305344|gb|ADZ06020.1| RecA [Aeromonas veronii bv. sobria]
 gi|325305346|gb|ADZ06021.1| RecA [Aeromonas veronii bv. sobria]
 gi|325305348|gb|ADZ06022.1| RecA [Aeromonas veronii bv. sobria]
 gi|325305350|gb|ADZ06023.1| RecA [Aeromonas veronii bv. sobria]
 gi|325305352|gb|ADZ06024.1| RecA [Aeromonas veronii bv. sobria]
 gi|325305354|gb|ADZ06025.1| RecA [Aeromonas veronii bv. veronii]
 gi|325305356|gb|ADZ06026.1| RecA [Aeromonas veronii bv. veronii]
          Length = 162

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 124/161 (77%), Positives = 146/161 (90%)

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSV
Sbjct: 2   GKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSV 61

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSP
Sbjct: 62  AALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSP 121

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           ETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+TRVKVV
Sbjct: 122 ETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNETRVKVV 162


>gi|291246115|gb|ADD85182.1| RecA [Borrelia recurrentis]
          Length = 186

 Score =  266 bits (680), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 121/178 (67%), Positives = 157/178 (88%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           +GIGG+P+GR+VEI+GPESSGKTTL L  IA+ QKTGG  AF+DAEHALD +YAR LGV+
Sbjct: 1   IGIGGYPRGRVVEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVN 60

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +  L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAAL P+AEI+G+MG++  G+QARL
Sbjct: 61  INELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGLQARL 120

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           MS+ALRK+T+ +S+S   ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V
Sbjct: 121 MSKALRKITAILSKSNACIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKV 178


>gi|117667622|gb|ABK55857.1| recombinase A [Streptomyces badius]
          Length = 168

 Score =  266 bits (680), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 123/168 (73%), Positives = 150/168 (89%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GG+ AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQRLGGSVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ +L++SQPD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDSLILSQPDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|112806728|emb|CAJ28014.1| recombination protein [Mesorhizobium plurifarium]
          Length = 162

 Score =  266 bits (680), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 127/163 (77%), Positives = 148/163 (90%), Gaps = 1/163 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           SQI+R +GKG+IM+LG+     E IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGK
Sbjct: 1   SQIERAFGKGSIMRLGANEQAVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGK 59

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D L
Sbjct: 60  TTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTL 119

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           VRSGA+D++V+DSVAALTPRAEIEG+MG++LPG+QARLMSQAL
Sbjct: 120 VRSGAIDVLVVDSVAALTPRAEIEGEMGDALPGLQARLMSQAL 162


>gi|325512849|gb|ADZ23613.1| RecA [Sinorhizobium fredii]
          Length = 156

 Score =  266 bits (680), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 131/157 (83%), Positives = 145/157 (92%), Gaps = 1/157 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           SVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 156


>gi|298566912|gb|ADI86532.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|298566920|gb|ADI86536.1| recombination protein A [Bradyrhizobium sp. CCBAU 05588]
 gi|298566922|gb|ADI86537.1| recombination protein A [Bradyrhizobium yuanmingense]
          Length = 158

 Score =  266 bits (680), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 123/157 (78%), Positives = 146/157 (92%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD 
Sbjct: 1   SGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG+
Sbjct: 61  VYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           +LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 ALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 157


>gi|220960982|gb|ACL92957.1| recombinase A [Streptomyces endus]
 gi|220961024|gb|ACL92978.1| recombinase A [Streptomyces sporocinereus]
 gi|220961078|gb|ACL93005.1| recombinase A [Streptomyces demainii]
 gi|325551428|gb|ADZ28555.1| recombinase A [Streptomyces hygroscopicus subsp. hygroscopicus]
          Length = 168

 Score =  266 bits (680), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 123/168 (73%), Positives = 149/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+TGGT AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQRTGGTVAFVDAEHALDPDYAQKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD  +L++SQPD GEQALEITDML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDSLILSQPDNGEQALEITDMLIRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+T ++++SK   +FINQ+R K+GVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITGALNQSKTTAIFINQLREKVGVMFGSPETTTGGRAL 168


>gi|318084974|gb|ADV39377.1| recombinase A [Streptomyces scabiei]
 gi|318084980|gb|ADV39380.1| recombinase A [Streptomyces scabiei]
 gi|318084984|gb|ADV39382.1| recombinase A [Streptomyces scabiei]
 gi|318084988|gb|ADV39384.1| recombinase A [Streptomyces scabiei]
 gi|318084990|gb|ADV39385.1| recombinase A [Streptomyces scabiei]
 gi|318084996|gb|ADV39388.1| recombinase A [Streptomyces stelliscabiei]
 gi|318085002|gb|ADV39391.1| recombinase A [Streptomyces bottropensis]
          Length = 168

 Score =  266 bits (680), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 123/168 (73%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR++E+YGPESSGKTTL LH +A +Q+ GG  AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVIEVYGPESSGKTTLTLHAVANAQRAGGQVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|307343157|emb|CBJ18108.1| recombinase A [Micromonospora echinospora]
          Length = 176

 Score =  266 bits (680), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 126/176 (71%), Positives = 149/176 (84%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDALLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRAL 176


>gi|289190634|gb|ADC93422.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-2]
 gi|289190640|gb|ADC93425.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-2]
          Length = 169

 Score =  266 bits (680), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 124/159 (77%), Positives = 147/159 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 11  IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 70

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 71  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 130

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169


>gi|299737714|gb|ADJ37180.1| recombinase A [Bradyrhizobium sp. CCBAU 25374]
 gi|299737716|gb|ADJ37181.1| recombinase A [Bradyrhizobium sp. CCBAU 25360]
          Length = 157

 Score =  266 bits (680), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 124/157 (78%), Positives = 146/157 (92%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD
Sbjct: 1   SSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG
Sbjct: 61  PVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           ++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RM
Sbjct: 121 DALPGLQARLMSQALRKLTASINKSNTMVIFINQIRM 157


>gi|330369296|gb|AEC12038.1| recombination protein A [Bradyrhizobium sp. CCBAU 45502]
          Length = 157

 Score =  266 bits (680), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 123/157 (78%), Positives = 146/157 (92%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +
Sbjct: 1   GSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPV 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++
Sbjct: 61  YARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDA 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 LPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 157


>gi|318084978|gb|ADV39379.1| recombinase A [Streptomyces turgidiscabies]
 gi|318084994|gb|ADV39387.1| recombinase A [Streptomyces reticuliscabiei]
          Length = 168

 Score =  266 bits (680), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 124/168 (73%), Positives = 147/168 (87%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+T ++S+S+   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITGALSQSQTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|29652072|gb|AAO87698.1| RecA [Listeria monocytogenes]
          Length = 192

 Score =  266 bits (680), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 128/194 (65%), Positives = 161/194 (82%), Gaps = 2/194 (1%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YG
Sbjct: 1   ALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYG 58

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQAL
Sbjct: 59  PESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQAL 118

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK
Sbjct: 119 EIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSK 178

Query: 195 CILVFINQMRMKIG 208
            I +FINQ+R K+G
Sbjct: 179 TIAIFINQIREKVG 192


>gi|220961012|gb|ACL92972.1| recombinase A [Streptomyces chrestomyceticus]
 gi|220961022|gb|ACL92977.1| recombinase A [Streptomyces rimosus subsp. paromomycinus]
 gi|220961032|gb|ACL92982.1| recombinase A [Streptomyces hygroscopicus subsp. decoyicus]
 gi|220961074|gb|ACL93003.1| recombinase A [Streptomyces monomycini]
 gi|220961086|gb|ACL93009.1| recombinase A [Streptomyces coelicolor]
          Length = 168

 Score =  266 bits (680), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 124/168 (73%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD   L++SQPD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDALILSQPDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|160947836|gb|ABX54727.1| RecA protein [Rhizobium tropici]
          Length = 167

 Score =  266 bits (680), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 131/161 (81%), Positives = 148/161 (91%), Gaps = 1/161 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 8   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRI 66

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 67  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 126

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+S
Sbjct: 127 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDS 167


>gi|220961042|gb|ACL92987.1| recombinase A [Streptomyces olivaceiscleroticus]
 gi|325551430|gb|ADZ28556.1| recombinase A [Streptomyces niger]
          Length = 168

 Score =  266 bits (680), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 125/168 (74%), Positives = 147/168 (87%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD   L++SQPD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDALILSQPDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|298566914|gb|ADI86533.1| recombination protein A [Bradyrhizobium yuanmingense]
          Length = 157

 Score =  266 bits (680), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 123/157 (78%), Positives = 146/157 (92%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD 
Sbjct: 1   SGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG+
Sbjct: 61  VYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           +LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 ALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 157


>gi|298566928|gb|ADI86540.1| recombination protein A [Bradyrhizobium elkanii]
          Length = 159

 Score =  266 bits (680), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 122/158 (77%), Positives = 146/158 (92%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD
Sbjct: 1   SSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG
Sbjct: 61  PVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           ++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 DALPGLQARLMSQALRKLTASINKSHTMVIFINQIRMK 158


>gi|318085004|gb|ADV39392.1| recombinase A [Streptomyces aurantiacus]
          Length = 168

 Score =  266 bits (679), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 122/168 (72%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +  +QK GG  AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVVNAQKAGGQVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD++NL++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIENLILSQPDNGEQALEIVDMLIRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|301601067|dbj|BAJ13222.1| RecA [Agrobacterium vitis]
          Length = 159

 Score =  266 bits (679), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 130/160 (81%), Positives = 145/160 (90%), Gaps = 1/160 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG+   I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VID
Sbjct: 60  KKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           SVAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT SI R
Sbjct: 120 SVAALTPKAEIEGEMGDSLPGMQARLMSQALRKLTGSIQR 159


>gi|298566926|gb|ADI86539.1| recombination protein A [Bradyrhizobium japonicum]
          Length = 158

 Score =  266 bits (679), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 122/157 (77%), Positives = 146/157 (92%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD 
Sbjct: 1   SGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG+
Sbjct: 61  VYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           +LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 ALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 157


>gi|225441937|ref|XP_002278976.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 389

 Score =  266 bits (679), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 137/336 (40%), Positives = 223/336 (66%), Gaps = 5/336 (1%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +Y  ++   +K  AL  A+S++   +G+ +++ L  +  +     V+S+GSL LD+ALGI
Sbjct: 50  EYGNDVKAAEKDTALRLAISRLAGDFGRESMLSL-QRFFVSRHAPVISTGSLKLDLALGI 108

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG PKGRIVEIYG E+SGKTTLALH I ++QK GG CA++D E+A++  +A  +GV++ N
Sbjct: 109 GGLPKGRIVEIYGQEASGKTTLALHIIKEAQKLGGYCAYLDVENAMNPSFAESMGVNVDN 168

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLIS PD+ E  L + + L +SG++D+IV+DSVAAL P+ E++  +G +   +Q+++M+Q
Sbjct: 169 LLISPPDSAENLLSMVNTLTKSGSMDVIVVDSVAALVPQHELDVVIGGTYQDVQSQIMAQ 228

Query: 182 ALRKLTSSISRSKCILVFINQMR--MKIGVMFGS-PETTTGGNALKFYSSVRLDIRRVGS 238
           ALRK+  S+ RS+ +++F+NQ+R  +K    FG   E T GGNAL+FY++VRL + R G 
Sbjct: 229 ALRKIHYSLCRSETLIIFVNQVRSSLKSSHGFGRLDEVTCGGNALRFYAAVRLRVMRTGL 288

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           ++ +D +TG    V+VVKNK+A   K+ +  I +G GI F  E+++L  +  ++ K G+ 
Sbjct: 289 LRTEDKVTGLGVCVQVVKNKLAHATKKADLGIQFGRGICFESEVLELACEHGVIWKEGSK 348

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
           +  +G+     +E  + ++ +N  + E I S LR +
Sbjct: 349 YIIEGEAFNNKQEAEQ-YMAQNSGVLERIVSFLRSH 383


>gi|220961002|gb|ACL92967.1| recombinase A [Streptomyces antimycoticus]
 gi|220961020|gb|ACL92976.1| recombinase A [Streptomyces melanosporofaciens]
 gi|220961056|gb|ACL92994.1| recombinase A [Streptomyces castelarensis]
 gi|220961058|gb|ACL92995.1| recombinase A [Streptomyces sporoclivatus]
 gi|220961062|gb|ACL92997.1| recombinase A [Streptomyces indonesiensis]
 gi|220961064|gb|ACL92998.1| recombinase A [Streptomyces rhizosphaericus]
 gi|220961066|gb|ACL92999.1| recombinase A [Streptomyces asiaticus]
 gi|220961068|gb|ACL93000.1| recombinase A [Streptomyces javensis]
 gi|220961070|gb|ACL93001.1| recombinase A [Streptomyces yogyakartensis]
 gi|220961072|gb|ACL93002.1| recombinase A [Streptomyces cangkringensis]
          Length = 168

 Score =  266 bits (679), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 124/168 (73%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GGT AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQRAGGTVAFVDAEHALDPDYAQKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD  +L++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDSLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|325515705|gb|ADZ24466.1| recombination protein A [Bradyrhizobium japonicum]
          Length = 157

 Score =  266 bits (679), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 122/157 (77%), Positives = 146/157 (92%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +Y
Sbjct: 1   SLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           ARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++L
Sbjct: 61  ARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDAL 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           PG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIG
Sbjct: 121 PGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIG 157


>gi|325512779|gb|ADZ23578.1| RecA [Bradyrhizobium japonicum]
          Length = 157

 Score =  266 bits (679), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 122/157 (77%), Positives = 146/157 (92%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +
Sbjct: 1   GSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPV 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++
Sbjct: 61  YARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDA 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 LPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 157


>gi|50982185|gb|AAT91758.1| recombination protein A [Bradyrhizobium japonicum bv. genistearum]
 gi|50982207|gb|AAT91769.1| recombination protein A [Bradyrhizobium japonicum bv. glycinearum]
 gi|50982209|gb|AAT91770.1| recombination protein A [Bradyrhizobium japonicum bv. glycinearum]
 gi|50982211|gb|AAT91771.1| recombination protein A [Bradyrhizobium japonicum bv. glycinearum]
 gi|50982213|gb|AAT91772.1| recombination protein A [Bradyrhizobium japonicum bv. genistearum]
 gi|50982215|gb|AAT91773.1| recombination protein A [Bradyrhizobium japonicum bv. genistearum]
 gi|50982217|gb|AAT91774.1| recombination protein A [Bradyrhizobium japonicum bv. genistearum]
          Length = 170

 Score =  266 bits (679), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 125/171 (73%), Positives = 152/171 (88%), Gaps = 1/171 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG      + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++Q
Sbjct: 1   MKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+D
Sbjct: 60  KKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           SVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 120 SVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 170


>gi|117667602|gb|ABK55847.1| recombinase A [Streptomyces luridiscabiei]
 gi|117667614|gb|ABK55853.1| recombinase A [Streptomyces ornatus]
 gi|117667618|gb|ABK55855.1| recombinase A [Streptomyces griseus]
 gi|117667626|gb|ABK55859.1| recombinase A [Streptomyces griseus subsp. griseus]
 gi|117667630|gb|ABK55861.1| recombinase A [Streptomyces microflavus]
 gi|117667648|gb|ABK55870.1| recombinase A [Streptomyces erumpens]
 gi|117667650|gb|ABK55871.1| recombinase A [Streptomyces alboviridis]
 gi|117667652|gb|ABK55872.1| recombinase A [Streptomyces fimicarius]
 gi|117667658|gb|ABK55875.1| recombinase A [Streptomyces acrimycini]
 gi|117667678|gb|ABK55885.1| recombinase A [Streptomyces caviscabies]
 gi|117667682|gb|ABK55887.1| recombinase A [Streptomyces microflavus]
 gi|117667684|gb|ABK55888.1| recombinase A [Streptomyces microflavus]
 gi|117667694|gb|ABK55893.1| recombinase A [Streptomyces flavogriseus]
 gi|117667704|gb|ABK55898.1| recombinase A [Streptomyces pulveraceus]
 gi|157000347|gb|ABV00473.1| recombinase A [Streptomyces atratus]
 gi|157000349|gb|ABV00474.1| recombinase A [Streptomyces baarnensis]
 gi|157000359|gb|ABV00479.1| recombinase A [Streptomyces flavofuscus]
 gi|157000361|gb|ABV00480.1| recombinase A [Streptomyces flavovirens]
 gi|157000363|gb|ABV00481.1| recombinase A [Streptomyces gelaticus]
 gi|220960956|gb|ACL92944.1| recombinase A [Streptomyces griseus]
 gi|220960958|gb|ACL92945.1| recombinase A [Streptomyces griseus]
 gi|220960960|gb|ACL92946.1| recombinase A [Streptomyces griseus]
 gi|220960962|gb|ACL92947.1| recombinase A [Streptomyces griseus]
 gi|220960964|gb|ACL92948.1| recombinase A [Streptomyces griseus]
 gi|220960966|gb|ACL92949.1| recombinase A [Streptomyces griseus]
          Length = 168

 Score =  266 bits (679), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 123/168 (73%), Positives = 149/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKLGGSVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ +L++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDSLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|50982221|gb|AAT91776.1| recombination protein A [Bradyrhizobium japonicum bv. glycinearum]
 gi|50982223|gb|AAT91777.1| recombination protein A [Bradyrhizobium japonicum bv. glycinearum]
 gi|190612080|gb|ACE80474.1| recombination protein A [Bradyrhizobium japonicum]
 gi|190612082|gb|ACE80475.1| recombination protein A [Bradyrhizobium japonicum]
 gi|190612084|gb|ACE80476.1| recombination protein A [Bradyrhizobium japonicum]
 gi|190612086|gb|ACE80477.1| recombination protein A [Bradyrhizobium japonicum]
 gi|190612088|gb|ACE80478.1| recombination protein A [Bradyrhizobium japonicum]
 gi|190612090|gb|ACE80479.1| recombination protein A [Bradyrhizobium japonicum]
 gi|190612092|gb|ACE80480.1| recombination protein A [Bradyrhizobium japonicum]
 gi|190612094|gb|ACE80481.1| recombination protein A [Bradyrhizobium japonicum]
 gi|190612096|gb|ACE80482.1| recombination protein A [Bradyrhizobium japonicum]
 gi|190612098|gb|ACE80483.1| recombination protein A [Bradyrhizobium japonicum]
 gi|190612100|gb|ACE80484.1| recombination protein A [Bradyrhizobium japonicum]
 gi|190612102|gb|ACE80485.1| recombination protein A [Bradyrhizobium japonicum]
 gi|190612104|gb|ACE80486.1| recombination protein A [Bradyrhizobium japonicum]
 gi|190612106|gb|ACE80487.1| recombination protein A [Bradyrhizobium japonicum]
 gi|190612108|gb|ACE80488.1| recombination protein A [Bradyrhizobium japonicum]
 gi|190612110|gb|ACE80489.1| recombination protein A [Bradyrhizobium japonicum]
 gi|190612112|gb|ACE80490.1| recombination protein A [Bradyrhizobium japonicum]
 gi|190612114|gb|ACE80491.1| recombination protein A [Bradyrhizobium japonicum]
 gi|190612116|gb|ACE80492.1| recombination protein A [Bradyrhizobium japonicum]
          Length = 170

 Score =  266 bits (679), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 122/159 (76%), Positives = 147/159 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 12  VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 71

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 72  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 131

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 132 GEMGDALPGLQARLMSQALRKLTASINKSHTMVIFINQI 170


>gi|29652110|gb|AAO87716.1| RecA [Listeria monocytogenes]
          Length = 187

 Score =  266 bits (679), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 127/188 (67%), Positives = 157/188 (83%), Gaps = 2/188 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA
Sbjct: 1   GSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRSGAVD++
Sbjct: 59  EVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDML 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+R K+GV
Sbjct: 119 VIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVGV 178

Query: 210 MFGSPETT 217
           MFG+PE T
Sbjct: 179 MFGNPEIT 186


>gi|290889087|gb|ADD69893.1| recombination protein A [Bradyrhizobium yuanmingense]
          Length = 157

 Score =  266 bits (679), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 123/157 (78%), Positives = 146/157 (92%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD
Sbjct: 1   SSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG
Sbjct: 61  PVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           ++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RM
Sbjct: 121 DALPGLQARLMSQALRKLTASINKSNTMVIFINQIRM 157


>gi|157000383|gb|ABV00491.1| recombinase A [Streptomyces tricolor]
          Length = 168

 Score =  265 bits (678), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 123/168 (73%), Positives = 147/168 (87%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GGT AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGTVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+  L++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDQLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+T ++++SK   +FINQ+R K+GVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITGALNQSKTTAIFINQLREKVGVMFGSPETTTGGRAL 168


>gi|220960974|gb|ACL92953.1| recombinase A [Streptomyces niger]
          Length = 168

 Score =  265 bits (678), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 122/168 (72%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GGT AFVDAEHALD  YA++L
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGTVAFVDAEHALDPEYAKRL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+  L++SQPD GEQALEITDML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDVDQLILSQPDNGEQALEITDMLIRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+T ++++SK   +FINQ+R K+GVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITGALNQSKTTAIFINQLREKVGVMFGSPETTTGGRAL 168


>gi|289190706|gb|ADC93458.1| recombinase A protein [Bradyrhizobium japonicum]
          Length = 169

 Score =  265 bits (678), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 122/159 (76%), Positives = 147/159 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 11  VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 70

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 71  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 130

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169


>gi|301601069|dbj|BAJ13223.1| RecA [Agrobacterium vitis]
          Length = 160

 Score =  265 bits (678), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 130/159 (81%), Positives = 145/159 (91%), Gaps = 1/159 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG+   I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++
Sbjct: 1   IMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEA 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VI
Sbjct: 60  QKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVI 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           DSVAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT SI
Sbjct: 120 DSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKLTGSI 158


>gi|190611996|gb|ACE80432.1| recombination protein A [Bradyrhizobium elkanii]
 gi|190611998|gb|ACE80433.1| recombination protein A [Bradyrhizobium elkanii]
 gi|190612000|gb|ACE80434.1| recombination protein A [Bradyrhizobium elkanii]
 gi|190612002|gb|ACE80435.1| recombination protein A [Bradyrhizobium elkanii]
 gi|190612006|gb|ACE80437.1| recombination protein A [Bradyrhizobium elkanii]
 gi|190612008|gb|ACE80438.1| recombination protein A [Bradyrhizobium sp. BuMiT10]
 gi|190612018|gb|ACE80443.1| recombination protein A [Bradyrhizobium elkanii]
          Length = 170

 Score =  265 bits (678), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 123/159 (77%), Positives = 146/159 (91%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE
Sbjct: 12  VETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 71

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E
Sbjct: 72  HALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVRSGAVDVLVIDSVAALVPKAELE 131

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 132 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 170


>gi|301601056|dbj|BAJ13217.1| RecA [Agrobacterium vitis]
          Length = 160

 Score =  265 bits (678), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 130/159 (81%), Positives = 145/159 (91%), Gaps = 1/159 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG+   I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++
Sbjct: 1   IMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEA 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VI
Sbjct: 60  QKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVI 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           DSVAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT SI
Sbjct: 120 DSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKLTGSI 158


>gi|262223183|gb|ACY38164.1| recombination protein RecA [Bradyrhizobium japonicum]
 gi|262223185|gb|ACY38165.1| recombination protein RecA [Bradyrhizobium sp. CTAW69]
 gi|262223189|gb|ACY38167.1| recombination protein RecA [Bradyrhizobium japonicum]
 gi|262223195|gb|ACY38170.1| recombination protein RecA [Bradyrhizobium japonicum]
          Length = 161

 Score =  265 bits (678), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 122/159 (76%), Positives = 147/159 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 3   VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 63  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 123 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 161


>gi|12045198|ref|NP_073009.1| recombinase A [Mycoplasma genitalium G37]
 gi|255660434|ref|ZP_05405843.1| recombinase A [Mycoplasma genitalium G37]
 gi|1350563|sp|P47581|RECA_MYCGE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|3844921|gb|AAC71564.1| recA protein (recombinase A) [Mycoplasma genitalium G37]
 gi|166078678|gb|ABY79296.1| recA protein (recombinase A) [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 340

 Score =  265 bits (678), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 136/290 (46%), Positives = 193/290 (66%), Gaps = 1/290 (0%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSL LD ALG GG P GRIVE+YG ESSGKTT+AL+ +A  QK G T  ++DAE
Sbjct: 38  IETISTGSLNLDEALGSGGLPLGRIVELYGNESSGKTTIALNAVASFQKAGKTACYIDAE 97

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
            ALD  YA+ +G+DL  LLI+ P  GE A  + + L+++  + +IVIDSVAAL P+ E+E
Sbjct: 98  GALDLAYAKSIGIDLNKLLIAHPRHGENAFALIESLIKTNKISLIVIDSVAALIPKQELE 157

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G + E   G+ AR+MS+ LR++ S +  SK  ++FINQ+R K GVMFG+ E TTGG AL+
Sbjct: 158 GTIEEQTIGLHARMMSKGLRRIQSILPDSKTCVLFINQLREKPGVMFGNNEVTTGGKALR 217

Query: 225 FYSSVRLDIRRVGSIKDK-DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           FYSS+R++ +RV  +KDK ++  G +T+V V KNK+A PF     +IM+  G     E+I
Sbjct: 218 FYSSLRMEAKRVELLKDKFNNYVGIKTKVMVSKNKIAKPFGVAILEIMFNRGFVHEHEVI 277

Query: 284 DLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           DL +K ++V ++G  +SF  + +  G+E     L E   + E I+ L  Q
Sbjct: 278 DLALKFNVVVRAGNSYSFNNESIAVGKEKLLNVLSEKPALFEQIKELTVQ 327


>gi|290889059|gb|ADD69879.1| recombination protein A [Bradyrhizobium japonicum]
 gi|290889061|gb|ADD69880.1| recombination protein A [Bradyrhizobium japonicum]
 gi|290889081|gb|ADD69890.1| recombination protein A [Bradyrhizobium japonicum]
          Length = 157

 Score =  265 bits (678), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 122/157 (77%), Positives = 146/157 (92%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD
Sbjct: 1   SSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG
Sbjct: 61  PVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           ++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RM
Sbjct: 121 DALPGLQARLMSQALRKLTASINKSNTMVIFINQIRM 157


>gi|262223179|gb|ACY38162.1| recombination protein RecA [Bradyrhizobium sp. CTAW38]
          Length = 161

 Score =  265 bits (678), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 124/159 (77%), Positives = 145/159 (91%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE
Sbjct: 3   VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E
Sbjct: 63  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G MG++LPG+QARLMSQALRKLT+SI+RS  +++FINQ+
Sbjct: 123 GKMGDALPGLQARLMSQALRKLTASINRSNTMVIFINQI 161


>gi|289190624|gb|ADC93417.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-14]
          Length = 169

 Score =  265 bits (678), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 123/159 (77%), Positives = 147/159 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VSSGSLGLDIALGIGG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 11  IEAVSSGSLGLDIALGIGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 70

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 71  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 130

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169


>gi|290889051|gb|ADD69875.1| recombination protein A [Bradyrhizobium japonicum]
          Length = 157

 Score =  265 bits (678), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 122/157 (77%), Positives = 146/157 (92%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD
Sbjct: 1   SSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG
Sbjct: 61  PVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           ++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RM
Sbjct: 121 DALPGLQARLMSQALRKLTASINKSHTMVIFINQIRM 157


>gi|289190630|gb|ADC93420.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-17]
 gi|289190632|gb|ADC93421.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-17]
 gi|289190636|gb|ADC93423.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-17]
          Length = 169

 Score =  265 bits (677), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 123/159 (77%), Positives = 146/159 (91%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE
Sbjct: 11  VETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 70

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E
Sbjct: 71  HALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVRSGAVDVLVIDSVAALVPKAELE 130

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169


>gi|25808161|gb|AAN74145.1| RecA [Helicobacter pylori]
          Length = 185

 Score =  265 bits (677), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 121/184 (65%), Positives = 154/184 (83%), Gaps = 1/184 (0%)

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPD
Sbjct: 1   IIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPD 60

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T 
Sbjct: 61  TGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITG 120

Query: 189 SISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   G
Sbjct: 121 VLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIG 180

Query: 248 NQTR 251
           N+ +
Sbjct: 181 NRAK 184


>gi|296087050|emb|CBI33377.3| unnamed protein product [Vitis vinifera]
          Length = 398

 Score =  265 bits (677), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 137/336 (40%), Positives = 223/336 (66%), Gaps = 5/336 (1%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +Y  ++   +K  AL  A+S++   +G+ +++ L  +  +     V+S+GSL LD+ALGI
Sbjct: 59  EYGNDVKAAEKDTALRLAISRLAGDFGRESMLSL-QRFFVSRHAPVISTGSLKLDLALGI 117

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG PKGRIVEIYG E+SGKTTLALH I ++QK GG CA++D E+A++  +A  +GV++ N
Sbjct: 118 GGLPKGRIVEIYGQEASGKTTLALHIIKEAQKLGGYCAYLDVENAMNPSFAESMGVNVDN 177

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLIS PD+ E  L + + L +SG++D+IV+DSVAAL P+ E++  +G +   +Q+++M+Q
Sbjct: 178 LLISPPDSAENLLSMVNTLTKSGSMDVIVVDSVAALVPQHELDVVIGGTYQDVQSQIMAQ 237

Query: 182 ALRKLTSSISRSKCILVFINQMR--MKIGVMFGS-PETTTGGNALKFYSSVRLDIRRVGS 238
           ALRK+  S+ RS+ +++F+NQ+R  +K    FG   E T GGNAL+FY++VRL + R G 
Sbjct: 238 ALRKIHYSLCRSETLIIFVNQVRSSLKSSHGFGRLDEVTCGGNALRFYAAVRLRVMRTGL 297

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           ++ +D +TG    V+VVKNK+A   K+ +  I +G GI F  E+++L  +  ++ K G+ 
Sbjct: 298 LRTEDKVTGLGVCVQVVKNKLAHATKKADLGIQFGRGICFESEVLELACEHGVIWKEGSK 357

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
           +  +G+     +E  + ++ +N  + E I S LR +
Sbjct: 358 YIIEGEAFNNKQEAEQ-YMAQNSGVLERIVSFLRSH 392


>gi|307343392|emb|CBJ18137.1| recombinase A [Micromonospora sp. GUI37]
          Length = 173

 Score =  265 bits (677), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 126/173 (72%), Positives = 147/173 (84%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHALD  Y
Sbjct: 1   SIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDALLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
            G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALK
Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALK 173


>gi|289190670|gb|ADC93440.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-17]
          Length = 169

 Score =  265 bits (677), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 123/159 (77%), Positives = 146/159 (91%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE
Sbjct: 11  VETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 70

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E
Sbjct: 71  HALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVRSGAVDVLVIDSVAALVPKAELE 130

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSTTMVIFINQI 169


>gi|50982179|gb|AAT91755.1| recombination protein A [Bradyrhizobium canariense bv. genistearum]
 gi|50982181|gb|AAT91756.1| recombination protein A [Bradyrhizobium canariense bv. genistearum]
 gi|50982187|gb|AAT91759.1| recombination protein A [Bradyrhizobium canariense bv. genistearum]
 gi|50982189|gb|AAT91760.1| recombination protein A [Bradyrhizobium canariense bv. genistearum]
 gi|50982191|gb|AAT91761.1| recombination protein A [Bradyrhizobium canariense bv. genistearum]
 gi|50982195|gb|AAT91763.1| recombination protein A [Bradyrhizobium canariense bv. genistearum]
 gi|50982197|gb|AAT91764.1| recombination protein A [Bradyrhizobium canariense bv. genistearum]
 gi|50982201|gb|AAT91766.1| recombination protein A [Bradyrhizobium canariense bv. genistearum]
 gi|50982203|gb|AAT91767.1| recombination protein A [Bradyrhizobium canariense bv. genistearum]
 gi|50982249|gb|AAT91790.1| recombination protein A [Bradyrhizobium canariense]
 gi|52550803|gb|AAU84447.1| recombination protein A [Bradyrhizobium canariense]
 gi|52550805|gb|AAU84448.1| recombination protein A [Bradyrhizobium canariense]
 gi|52550807|gb|AAU84449.1| recombination protein A [Bradyrhizobium canariense]
 gi|52550809|gb|AAU84450.1| recombination protein A [Bradyrhizobium canariense]
 gi|52550811|gb|AAU84451.1| recombination protein A [Bradyrhizobium canariense]
 gi|52550813|gb|AAU84452.1| recombination protein A [Bradyrhizobium canariense]
 gi|52550815|gb|AAU84453.1| recombination protein A [Bradyrhizobium canariense]
          Length = 170

 Score =  265 bits (677), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 123/159 (77%), Positives = 146/159 (91%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE
Sbjct: 12  VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 71

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E
Sbjct: 72  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELE 131

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 132 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 170


>gi|160947828|gb|ABX54723.1| RecA protein [Bradyrhizobium japonicum]
          Length = 168

 Score =  265 bits (677), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 125/169 (73%), Positives = 151/169 (89%), Gaps = 1/169 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG++M+LG      + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTT
Sbjct: 1   IERAFGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVR
Sbjct: 60  LALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           SGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI+
Sbjct: 120 SGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASIN 168


>gi|318084956|gb|ADV39368.1| recombinase A [Streptomyces lavendulocolor]
          Length = 168

 Score =  265 bits (677), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 125/168 (74%), Positives = 147/168 (87%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+ G P+GR+VEIYGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVRGLPRGRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAQKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|160947844|gb|ABX54731.1| RecA protein [Bradyrhizobium liaoningense]
          Length = 167

 Score =  265 bits (677), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 128/168 (76%), Positives = 150/168 (89%), Gaps = 1/168 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG++M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTT
Sbjct: 1   IERSFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVR
Sbjct: 60  LALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           SGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI
Sbjct: 120 SGAVDVMVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASI 167


>gi|68637427|emb|CAF21817.1| recombinase A [Weissella kandleri]
          Length = 190

 Score =  265 bits (677), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 127/189 (67%), Positives = 158/189 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E  S+GSL LDIALGIGG+PKGRI+EIYGPESSGKTTLALH  A+ Q  GGT A+VDAE
Sbjct: 2   VESFSTGSLKLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAAAEVQAEGGTVAYVDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YAR LGV + +LL+SQPDTGEQ L I + L++SGAVD+IVIDSVAALTP+AEI+
Sbjct: 62  NAMDVEYARNLGVKVDDLLLSQPDTGEQGLSIAEELIKSGAVDLIVIDSVAALTPKAEID 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G +G++  G+QAR+MS ALRKL+ +I +    ++FINQ+R KIGVMFG+PETT GG ALK
Sbjct: 122 GAIGDTTVGLQARMMSSALRKLSGAILKMGTTVIFINQLREKIGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDI 233
           FYS+VRLD+
Sbjct: 182 FYSTVRLDV 190


>gi|262223167|gb|ACY38156.1| recombination protein RecA [Bradyrhizobium sp. CTAW11]
 gi|262223169|gb|ACY38157.1| recombination protein RecA [Bradyrhizobium sp. CTAW22]
 gi|262223171|gb|ACY38158.1| recombination protein RecA [Bradyrhizobium canariense]
 gi|262223173|gb|ACY38159.1| recombination protein RecA [Bradyrhizobium canariense]
 gi|262223175|gb|ACY38160.1| recombination protein RecA [Bradyrhizobium canariense]
 gi|262223177|gb|ACY38161.1| recombination protein RecA [Bradyrhizobium canariense]
 gi|262223181|gb|ACY38163.1| recombination protein RecA [Bradyrhizobium canariense]
 gi|262223191|gb|ACY38168.1| recombination protein RecA [Bradyrhizobium canariense]
 gi|262223193|gb|ACY38169.1| recombination protein RecA [Bradyrhizobium canariense]
 gi|262223197|gb|ACY38171.1| recombination protein RecA [Bradyrhizobium canariense]
 gi|262223199|gb|ACY38172.1| recombination protein RecA [Bradyrhizobium canariense]
 gi|262223201|gb|ACY38173.1| recombination protein RecA [Bradyrhizobium canariense]
 gi|262223203|gb|ACY38174.1| recombination protein RecA [Bradyrhizobium canariense]
          Length = 161

 Score =  265 bits (677), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 123/159 (77%), Positives = 146/159 (91%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE
Sbjct: 3   VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E
Sbjct: 63  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 123 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 161


>gi|220961048|gb|ACL92990.1| recombinase A [Streptomyces mashuensis]
          Length = 168

 Score =  265 bits (677), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 122/168 (72%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GGT AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQRAGGTVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ +L++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDSLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+T ++++SK   +FINQ+R K+GVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITGALNQSKTTAIFINQLREKVGVMFGSPETTTGGRAL 168


>gi|289190610|gb|ADC93410.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-20]
 gi|289190644|gb|ADC93427.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-19]
 gi|289190682|gb|ADC93446.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-19]
 gi|289190692|gb|ADC93451.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-20]
          Length = 169

 Score =  265 bits (677), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 123/159 (77%), Positives = 146/159 (91%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE
Sbjct: 11  VETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 70

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E
Sbjct: 71  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELE 130

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169


>gi|156071390|dbj|BAF75802.1| recombinase A [Bradyrhizobium betae]
 gi|289190714|gb|ADC93462.1| recombinase A protein [Bradyrhizobium betae]
          Length = 169

 Score =  265 bits (677), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 121/159 (76%), Positives = 147/159 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +SSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 11  VEAISSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 70

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 71  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 130

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169


>gi|220960994|gb|ACL92963.1| recombinase A [Streptomyces ramulosus]
 gi|220961018|gb|ACL92975.1| recombinase A [Streptomyces catenulae]
          Length = 168

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 123/168 (73%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD   L++SQPD GEQALEITDMLVRSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+Q
Sbjct: 61  GVDTDALILSQPDNGEQALEITDMLVRSGALDLIVIDSVAALVPKAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|220960986|gb|ACL92959.1| recombinase A [Streptomyces lydicus]
          Length = 168

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 122/168 (72%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR++E+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVIEVYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD  +L++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDSLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|207080825|gb|ACI22756.1| RecA [Sinorhizobium sp. J3-42]
          Length = 157

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 129/158 (81%), Positives = 145/158 (91%), Gaps = 1/158 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG + SI E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL T+
Sbjct: 1   KGSVMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTV 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 60  AEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           +V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKL
Sbjct: 120 LVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKL 157


>gi|318084948|gb|ADV39364.1| recombinase A [Streptomyces umbrinus]
 gi|318084968|gb|ADV39374.1| recombinase A [Streptomyces ederensis]
          Length = 168

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 124/168 (73%), Positives = 146/168 (86%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+T ++S+S    +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITGALSQSGTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|160947834|gb|ABX54726.1| RecA protein [Bradyrhizobium yuanmingense]
          Length = 167

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 127/168 (75%), Positives = 150/168 (89%), Gaps = 1/168 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG++M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTT
Sbjct: 1   IERSFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVR
Sbjct: 60  LALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           SGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI
Sbjct: 120 SGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASI 167


>gi|158147307|gb|ABW22707.1| recA [Bradyrhizobium liaoningense]
          Length = 157

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 124/157 (78%), Positives = 145/157 (92%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEH
Sbjct: 1   EAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG
Sbjct: 61  ALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           +MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ
Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQ 157


>gi|301601091|dbj|BAJ13234.1| RecA [Agrobacterium vitis]
          Length = 160

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 131/164 (79%), Positives = 146/164 (89%), Gaps = 4/164 (2%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG+   I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++
Sbjct: 1   IMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEA 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VI
Sbjct: 60  QKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVI 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           DSVAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT    R KC
Sbjct: 120 DSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKLT---PRYKC 160


>gi|29651965|gb|AAO87645.1| RecA [Listeria monocytogenes]
          Length = 191

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 127/193 (65%), Positives = 160/193 (82%), Gaps = 2/193 (1%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGP
Sbjct: 1   LDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK 
Sbjct: 119 IAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKT 178

Query: 196 ILVFINQMRMKIG 208
           I +FINQ+R K+G
Sbjct: 179 IAIFINQIREKVG 191


>gi|156766413|gb|ABU94841.1| recombination protein A [Bradyrhizobium sp. Pter37]
          Length = 170

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 126/171 (73%), Positives = 152/171 (88%), Gaps = 1/171 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 170


>gi|29652062|gb|AAO87693.1| RecA [Listeria monocytogenes]
          Length = 185

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 126/186 (67%), Positives = 156/186 (83%), Gaps = 2/186 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA
Sbjct: 1   GSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRSGAVD++
Sbjct: 59  EVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDML 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+R K+GV
Sbjct: 119 VIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVGV 178

Query: 210 MFGSPE 215
           MFG+PE
Sbjct: 179 MFGNPE 184


>gi|29652202|gb|AAO87762.1| RecA [Listeria monocytogenes]
          Length = 184

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 126/186 (67%), Positives = 156/186 (83%), Gaps = 2/186 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA
Sbjct: 1   GSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRSGAVD++
Sbjct: 59  EVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDML 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+R K+GV
Sbjct: 119 VIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVGV 178

Query: 210 MFGSPE 215
           MFG+PE
Sbjct: 179 MFGNPE 184


>gi|207080817|gb|ACI22752.1| RecA [Sinorhizobium sp. J3-61]
          Length = 159

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 129/158 (81%), Positives = 145/158 (91%), Gaps = 1/158 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG + SI E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL T+
Sbjct: 3   KGSVMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTV 61

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 62  AEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDV 121

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           +V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKL
Sbjct: 122 LVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKL 159


>gi|220960996|gb|ACL92964.1| recombinase A [Streptomyces rimosus subsp. rimosus]
 gi|220961010|gb|ACL92971.1| recombinase A [Streptomyces albofaciens]
          Length = 168

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 124/168 (73%), Positives = 147/168 (87%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VEIYGPESSGKTTL LH +A +QK GG+ AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGIPRGRVVEIYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD   L++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDALILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|25992233|gb|AAN77110.1| recombinase A [Desulfitobacterium hafniense DCB-2]
 gi|25992239|gb|AAN77113.1| recombinase A [Desulfitobacterium hafniense]
 gi|25992245|gb|AAN77116.1| recombinase A [Desulfitobacterium hafniense DP7]
          Length = 192

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 130/192 (67%), Positives = 163/192 (84%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ALH  A++QK GG  AF+DAEHALD +YA+ LGV++ NLL+SQPDTGEQALEI
Sbjct: 1   SSGKTTVALHIAAEAQKLGGVAAFIDAEHALDPVYAKALGVNIDNLLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            + LVRSGA+D+I+IDSVAAL PRAEIEG+MG+S  G+ ARLMSQALRKLT +IS+S   
Sbjct: 61  CEALVRSGAIDVIIIDSVAALVPRAEIEGEMGDSHVGLHARLMSQALRKLTGAISKSNTC 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+R K+G+MFG+PETTTGG ALKFY+SVRL++RR  ++K    + GN+T+VKVVK
Sbjct: 121 VIFINQIREKVGIMFGNPETTTGGRALKFYASVRLEVRRADTLKQGQDMIGNRTKVKVVK 180

Query: 257 NKMASPFKQVEF 268
           NK+A PFKQ EF
Sbjct: 181 NKVAPPFKQAEF 192


>gi|307343354|emb|CBJ18118.1| recombinase A [Micromonospora purpureochromogenes]
          Length = 172

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 124/172 (72%), Positives = 147/172 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPDY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   LL+SQPDTGEQALEITDMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDALLVSQPDTGEQALEITDMLVRSGAIDIVVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
            G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRAL 172


>gi|117667608|gb|ABK55850.1| recombinase A [Streptomyces yanii]
 gi|117667654|gb|ABK55873.1| recombinase A [Streptomyces albovinaceus]
 gi|117667690|gb|ABK55891.1| recombinase A [Streptomyces griseoplanus]
 gi|117667692|gb|ABK55892.1| recombinase A [Streptomyces griseinus]
 gi|117667696|gb|ABK55894.1| recombinase A [Streptomyces mediolani]
 gi|157000377|gb|ABV00488.1| recombinase A [Streptomyces parvus]
 gi|294963355|gb|ADF50162.1| recombinase A [Streptomyces flavogriseus]
 gi|294963357|gb|ADF50163.1| recombinase A [Streptomyces flavogriseus]
 gi|294963359|gb|ADF50164.1| recombinase A [Streptomyces flavogriseus]
 gi|294963361|gb|ADF50165.1| recombinase A [Streptomyces flavogriseus]
 gi|294963363|gb|ADF50166.1| recombinase A [Streptomyces flavogriseus]
 gi|294963365|gb|ADF50167.1| recombinase A [Streptomyces flavogriseus]
 gi|294963367|gb|ADF50168.1| recombinase A [Streptomyces flavogriseus]
 gi|294963369|gb|ADF50169.1| recombinase A [Streptomyces flavogriseus]
 gi|294963371|gb|ADF50170.1| recombinase A [Streptomyces flavogriseus]
 gi|294963373|gb|ADF50171.1| recombinase A [Streptomyces flavogriseus]
 gi|294963375|gb|ADF50172.1| recombinase A [Streptomyces flavogriseus]
 gi|294963377|gb|ADF50173.1| recombinase A [Streptomyces flavogriseus]
 gi|294963379|gb|ADF50174.1| recombinase A [Streptomyces flavogriseus]
 gi|294963381|gb|ADF50175.1| recombinase A [Streptomyces flavogriseus]
 gi|294963383|gb|ADF50176.1| recombinase A [Streptomyces flavogriseus]
 gi|294963385|gb|ADF50177.1| recombinase A [Streptomyces flavogriseus]
 gi|294963387|gb|ADF50178.1| recombinase A [Streptomyces flavogriseus]
 gi|294963389|gb|ADF50179.1| recombinase A [Streptomyces flavogriseus]
 gi|294963391|gb|ADF50180.1| recombinase A [Streptomyces flavogriseus]
 gi|294963393|gb|ADF50181.1| recombinase A [Streptomyces flavogriseus]
 gi|294963395|gb|ADF50182.1| recombinase A [Streptomyces flavogriseus]
 gi|294963397|gb|ADF50183.1| recombinase A [Streptomyces flavogriseus]
 gi|294963399|gb|ADF50184.1| recombinase A [Streptomyces flavogriseus]
 gi|294963401|gb|ADF50185.1| recombinase A [Streptomyces flavogriseus]
 gi|294963403|gb|ADF50186.1| recombinase A [Streptomyces flavogriseus]
 gi|294963405|gb|ADF50187.1| recombinase A [Streptomyces flavogriseus]
 gi|294963407|gb|ADF50188.1| recombinase A [Streptomyces flavogriseus]
 gi|294963409|gb|ADF50189.1| recombinase A [Streptomyces flavogriseus]
 gi|294963411|gb|ADF50190.1| recombinase A [Streptomyces flavogriseus]
 gi|294963413|gb|ADF50191.1| recombinase A [Streptomyces flavogriseus]
 gi|294963415|gb|ADF50192.1| recombinase A [Streptomyces flavogriseus]
 gi|294963417|gb|ADF50193.1| recombinase A [Streptomyces flavogriseus]
 gi|294963419|gb|ADF50194.1| recombinase A [Streptomyces flavogriseus]
 gi|294963421|gb|ADF50195.1| recombinase A [Streptomyces flavogriseus]
 gi|294963423|gb|ADF50196.1| recombinase A [Streptomyces flavogriseus]
 gi|294963425|gb|ADF50197.1| recombinase A [Streptomyces flavogriseus]
 gi|294963427|gb|ADF50198.1| recombinase A [Streptomyces flavogriseus]
          Length = 168

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 122/168 (72%), Positives = 149/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GG+ AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQRLGGSVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ +L++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDSLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|289190646|gb|ADC93428.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-22]
 gi|289190652|gb|ADC93431.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-22]
          Length = 169

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 122/159 (76%), Positives = 146/159 (91%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +SSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE
Sbjct: 11  VETISSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 70

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E
Sbjct: 71  HALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVRSGAVDVLVIDSVAALVPKAELE 130

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169


>gi|220960992|gb|ACL92962.1| recombinase A [Streptomyces violaceusniger]
          Length = 168

 Score =  264 bits (675), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 122/168 (72%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GGT AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQRAGGTVAFVDAEHALDPDYAQKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD  +L++SQPD GEQALEITDML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDSLILSQPDNGEQALEITDMLIRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+T ++++SK   +FINQ+R K+GVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITGALNQSKTTAIFINQLREKVGVMFGSPETTTGGRAL 168


>gi|289190626|gb|ADC93418.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-21]
 gi|289190628|gb|ADC93419.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-18]
          Length = 169

 Score =  264 bits (675), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 122/159 (76%), Positives = 146/159 (91%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE
Sbjct: 11  VETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 70

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 71  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 130

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169


>gi|29652003|gb|AAO87664.1| RecA [Listeria monocytogenes]
          Length = 187

 Score =  264 bits (675), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 126/189 (66%), Positives = 158/189 (83%), Gaps = 2/189 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MRMKIGVMF 211
           +R K+GVMF
Sbjct: 179 IREKVGVMF 187


>gi|160425373|gb|ABX39528.1| RecA [Bradyrhizobium sp. SEMIA 6144]
          Length = 170

 Score =  264 bits (675), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 123/159 (77%), Positives = 146/159 (91%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 12  IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 71

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+A +E
Sbjct: 72  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKARLE 131

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 132 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 170


>gi|156766415|gb|ABU94842.1| recombination protein A [Bradyrhizobium sp. Wall28]
 gi|156766421|gb|ABU94845.1| recombination protein A [Bradyrhizobium sp. Pter29]
 gi|156766429|gb|ABU94849.1| recombination protein A [Bradyrhizobium sp. La5-8]
 gi|156766433|gb|ABU94851.1| recombination protein A [Bradyrhizobium sp. Cp5.3]
          Length = 170

 Score =  264 bits (675), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 126/171 (73%), Positives = 152/171 (88%), Gaps = 1/171 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKSDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 170


>gi|298566924|gb|ADI86538.1| recombination protein A [Bradyrhizobium elkanii]
          Length = 158

 Score =  264 bits (675), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 121/157 (77%), Positives = 145/157 (92%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD 
Sbjct: 1   SGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG+
Sbjct: 61  VYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           +LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 ALPGLQARLMSQALRKLTASINKSHTMVIFINQIRMK 157


>gi|325512769|gb|ADZ23573.1| RecA [Bradyrhizobium elkanii]
          Length = 157

 Score =  264 bits (675), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 121/157 (77%), Positives = 145/157 (92%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +
Sbjct: 1   GSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPV 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++
Sbjct: 61  YARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDA 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 LPGLQARLMSQALRKLTASINKSHTMVIFINQIRMKI 157


>gi|160947842|gb|ABX54730.1| RecA protein [Rhizobium leguminosarum]
 gi|160947854|gb|ABX54736.1| RecA protein [Rhizobium leguminosarum]
          Length = 166

 Score =  264 bits (675), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 128/160 (80%), Positives = 148/160 (92%), Gaps = 1/160 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 8   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 66

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 67  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 126

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+
Sbjct: 127 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGD 166


>gi|262223187|gb|ACY38166.1| recombination protein RecA [Bradyrhizobium sp. CTAW71]
          Length = 161

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 123/159 (77%), Positives = 146/159 (91%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE
Sbjct: 3   VESVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E
Sbjct: 63  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELE 122

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 123 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 161


>gi|50982233|gb|AAT91782.1| recombination protein A [Bradyrhizobium elkanii]
 gi|50982235|gb|AAT91783.1| recombination protein A [Bradyrhizobium elkanii]
 gi|50982247|gb|AAT91789.1| recombination protein A [Bradyrhizobium elkanii]
 gi|190612016|gb|ACE80442.1| recombination protein A [Bradyrhizobium elkanii]
 gi|190612020|gb|ACE80444.1| recombination protein A [Bradyrhizobium elkanii]
 gi|190612024|gb|ACE80446.1| recombination protein A [Bradyrhizobium elkanii]
 gi|190612026|gb|ACE80447.1| recombination protein A [Bradyrhizobium elkanii]
 gi|190612030|gb|ACE80449.1| recombination protein A [Bradyrhizobium elkanii]
 gi|190612032|gb|ACE80450.1| recombination protein A [Bradyrhizobium elkanii]
 gi|190612034|gb|ACE80451.1| recombination protein A [Bradyrhizobium elkanii]
 gi|190612036|gb|ACE80452.1| recombination protein A [Bradyrhizobium elkanii]
          Length = 170

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 121/159 (76%), Positives = 146/159 (91%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE
Sbjct: 12  VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 71

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 72  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 131

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 132 GEMGDALPGLQARLMSQALRKLTASINKSHTMVIFINQI 170


>gi|325515703|gb|ADZ24465.1| recombination protein A [Bradyrhizobium sp. CCBAU 15766]
 gi|325515707|gb|ADZ24467.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|325515723|gb|ADZ24475.1| recombination protein A [Bradyrhizobium sp. CCBAU 15774]
 gi|330369294|gb|AEC12037.1| recombination protein A [Bradyrhizobium sp. CCBAU 25541]
          Length = 156

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 122/156 (78%), Positives = 145/156 (92%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +Y
Sbjct: 1   SLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           ARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++L
Sbjct: 61  ARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDAL 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           PG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 PGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 156


>gi|146431538|gb|ABQ40751.1| recombination-repair protein [Vibrio harveyi]
 gi|146431540|gb|ABQ40752.1| recombination-repair protein [Vibrio harveyi]
 gi|146431542|gb|ABQ40753.1| recombination-repair protein [Vibrio harveyi]
 gi|146431544|gb|ABQ40754.1| recombination-repair protein [Vibrio harveyi]
 gi|146431546|gb|ABQ40755.1| recombination-repair protein [Vibrio harveyi]
 gi|146431548|gb|ABQ40756.1| recombination-repair protein [Vibrio harveyi]
 gi|146431550|gb|ABQ40757.1| recombination-repair protein [Vibrio harveyi]
 gi|146431552|gb|ABQ40758.1| recombination-repair protein [Vibrio harveyi]
 gi|146431554|gb|ABQ40759.1| recombination-repair protein [Vibrio harveyi]
 gi|146431556|gb|ABQ40760.1| recombination-repair protein [Vibrio harveyi]
 gi|146431558|gb|ABQ40761.1| recombination-repair protein [Vibrio harveyi]
 gi|146431560|gb|ABQ40762.1| recombination-repair protein [Vibrio harveyi]
 gi|146431562|gb|ABQ40763.1| recombination-repair protein [Vibrio harveyi]
 gi|146431564|gb|ABQ40764.1| recombination-repair protein [Vibrio harveyi]
 gi|146431566|gb|ABQ40765.1| recombination-repair protein [Vibrio harveyi]
 gi|146431568|gb|ABQ40766.1| recombination-repair protein [Vibrio harveyi]
 gi|146431570|gb|ABQ40767.1| recombination-repair protein [Vibrio harveyi]
 gi|146431572|gb|ABQ40768.1| recombination-repair protein [Vibrio harveyi]
 gi|146431574|gb|ABQ40769.1| recombination-repair protein [Vibrio harveyi]
 gi|146431576|gb|ABQ40770.1| recombination-repair protein [Vibrio harveyi]
 gi|146431578|gb|ABQ40771.1| recombination-repair protein [Vibrio harveyi]
 gi|146431580|gb|ABQ40772.1| recombination-repair protein [Vibrio harveyi]
 gi|146431582|gb|ABQ40773.1| recombination-repair protein [Vibrio harveyi]
 gi|146431584|gb|ABQ40774.1| recombination-repair protein [Vibrio harveyi]
 gi|146431586|gb|ABQ40775.1| recombination-repair protein [Vibrio harveyi]
 gi|146431588|gb|ABQ40776.1| recombination-repair protein [Vibrio harveyi]
 gi|146431590|gb|ABQ40777.1| recombination-repair protein [Vibrio harveyi]
 gi|146431592|gb|ABQ40778.1| recombination-repair protein [Vibrio harveyi]
 gi|146431594|gb|ABQ40779.1| recombination-repair protein [Vibrio harveyi]
 gi|146431596|gb|ABQ40780.1| recombination-repair protein [Vibrio harveyi]
 gi|146431598|gb|ABQ40781.1| recombination-repair protein [Vibrio harveyi]
 gi|146431600|gb|ABQ40782.1| recombination-repair protein [Vibrio harveyi]
 gi|146431602|gb|ABQ40783.1| recombination-repair protein [Vibrio harveyi]
 gi|146431604|gb|ABQ40784.1| recombination-repair protein [Vibrio harveyi]
 gi|146431606|gb|ABQ40785.1| recombination-repair protein [Vibrio harveyi]
 gi|146431608|gb|ABQ40786.1| recombination-repair protein [Vibrio harveyi]
 gi|146431610|gb|ABQ40787.1| recombination-repair protein [Vibrio harveyi]
 gi|146431612|gb|ABQ40788.1| recombination-repair protein [Vibrio harveyi]
 gi|146431614|gb|ABQ40789.1| recombination-repair protein [Vibrio harveyi]
 gi|146431616|gb|ABQ40790.1| recombination-repair protein [Vibrio harveyi]
 gi|146431618|gb|ABQ40791.1| recombination-repair protein [Vibrio harveyi]
 gi|146431620|gb|ABQ40792.1| recombination-repair protein [Vibrio harveyi]
 gi|146431622|gb|ABQ40793.1| recombination-repair protein [Vibrio harveyi]
 gi|146431624|gb|ABQ40794.1| recombination-repair protein [Vibrio harveyi]
 gi|146431626|gb|ABQ40795.1| recombination-repair protein [Vibrio harveyi]
 gi|146431628|gb|ABQ40796.1| recombination-repair protein [Vibrio harveyi]
 gi|146431630|gb|ABQ40797.1| recombination-repair protein [Vibrio harveyi]
 gi|146431632|gb|ABQ40798.1| recombination-repair protein [Vibrio harveyi]
 gi|146431634|gb|ABQ40799.1| recombination-repair protein [Vibrio harveyi]
 gi|146431636|gb|ABQ40800.1| recombination-repair protein [Vibrio harveyi]
 gi|146431638|gb|ABQ40801.1| recombination-repair protein [Vibrio harveyi]
 gi|146431640|gb|ABQ40802.1| recombination-repair protein [Vibrio harveyi]
 gi|146431642|gb|ABQ40803.1| recombination-repair protein [Vibrio harveyi]
 gi|146431644|gb|ABQ40804.1| recombination-repair protein [Vibrio harveyi]
 gi|146431646|gb|ABQ40805.1| recombination-repair protein [Vibrio harveyi]
 gi|146431648|gb|ABQ40806.1| recombination-repair protein [Vibrio harveyi]
 gi|146431650|gb|ABQ40807.1| recombination-repair protein [Vibrio harveyi]
 gi|146431652|gb|ABQ40808.1| recombination-repair protein [Vibrio harveyi]
 gi|146431654|gb|ABQ40809.1| recombination-repair protein [Vibrio harveyi]
 gi|146431656|gb|ABQ40810.1| recombination-repair protein [Vibrio harveyi]
 gi|146431658|gb|ABQ40811.1| recombination-repair protein [Vibrio harveyi]
 gi|146431660|gb|ABQ40812.1| recombination-repair protein [Vibrio harveyi]
 gi|146431662|gb|ABQ40813.1| recombination-repair protein [Vibrio harveyi]
 gi|146431664|gb|ABQ40814.1| recombination-repair protein [Vibrio harveyi]
 gi|146431666|gb|ABQ40815.1| recombination-repair protein [Vibrio harveyi]
 gi|146431668|gb|ABQ40816.1| recombination-repair protein [Vibrio harveyi]
 gi|146431670|gb|ABQ40817.1| recombination-repair protein [Vibrio communis]
 gi|146431672|gb|ABQ40818.1| recombination-repair protein [Vibrio harveyi]
 gi|146431674|gb|ABQ40819.1| recombination-repair protein [Vibrio harveyi]
 gi|146432074|gb|ABQ41019.1| recombination-repair protein [Vibrio campbellii]
 gi|146432076|gb|ABQ41020.1| recombination-repair protein [Vibrio campbellii]
 gi|146432078|gb|ABQ41021.1| recombination-repair protein [Vibrio campbellii]
 gi|146432080|gb|ABQ41022.1| recombination-repair protein [Vibrio campbellii]
 gi|146432082|gb|ABQ41023.1| recombination-repair protein [Vibrio campbellii]
 gi|146432084|gb|ABQ41024.1| recombination-repair protein [Vibrio campbellii]
 gi|146432086|gb|ABQ41025.1| recombination-repair protein [Vibrio campbellii]
 gi|146432088|gb|ABQ41026.1| recombination-repair protein [Vibrio campbellii]
 gi|146432090|gb|ABQ41027.1| recombination-repair protein [Vibrio campbellii]
 gi|146432092|gb|ABQ41028.1| recombination-repair protein [Vibrio campbellii]
 gi|146432094|gb|ABQ41029.1| recombination-repair protein [Vibrio campbellii]
 gi|146432096|gb|ABQ41030.1| recombination-repair protein [Vibrio campbellii]
 gi|146432098|gb|ABQ41031.1| recombination-repair protein [Vibrio campbellii]
 gi|146432100|gb|ABQ41032.1| recombination-repair protein [Vibrio campbellii]
 gi|146432102|gb|ABQ41033.1| recombination-repair protein [Vibrio campbellii]
 gi|146432104|gb|ABQ41034.1| recombination-repair protein [Vibrio campbellii]
 gi|146432106|gb|ABQ41035.1| recombination-repair protein [Vibrio campbellii]
 gi|146432108|gb|ABQ41036.1| recombination-repair protein [Vibrio campbellii]
 gi|146432110|gb|ABQ41037.1| recombination-repair protein [Vibrio campbellii]
 gi|146432112|gb|ABQ41038.1| recombination-repair protein [Vibrio campbellii]
 gi|146432114|gb|ABQ41039.1| recombination-repair protein [Vibrio campbellii]
 gi|146432120|gb|ABQ41042.1| recombination-repair protein [Vibrio campbellii]
 gi|146432122|gb|ABQ41043.1| recombination-repair protein [Vibrio campbellii]
 gi|146432124|gb|ABQ41044.1| recombination-repair protein [Vibrio campbellii]
 gi|146432126|gb|ABQ41045.1| recombination-repair protein [Vibrio campbellii]
 gi|146432229|gb|ABQ41096.1| recombination-repair protein [Vibrio rotiferianus]
 gi|146432231|gb|ABQ41097.1| recombination-repair protein [Vibrio rotiferianus]
 gi|146432233|gb|ABQ41098.1| recombination-repair protein [Vibrio rotiferianus]
 gi|305633009|dbj|BAJ16212.1| recombination-repair protein [Vibrio sp. TCFB 0772]
 gi|308522656|dbj|BAJ22939.1| DNA recombination protein [Vibrio sagamiensis]
 gi|308522658|dbj|BAJ22940.1| DNA recombination protein [Vibrio sagamiensis]
          Length = 165

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 118/165 (71%), Positives = 149/165 (90%)

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALT
Sbjct: 1   AFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALT 60

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           P+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTT
Sbjct: 61  PKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTT 120

Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           GGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PF
Sbjct: 121 GGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPF 165


>gi|325512841|gb|ADZ23609.1| RecA [Bradyrhizobium japonicum]
          Length = 156

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 121/156 (77%), Positives = 145/156 (92%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           LGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YA
Sbjct: 1   LGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           RKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LP
Sbjct: 61  RKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALP 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+QARLMSQALRKLT+SI++S  +++FINQ+RMKIG
Sbjct: 121 GLQARLMSQALRKLTASINKSHTMVIFINQIRMKIG 156


>gi|220960972|gb|ACL92952.1| recombinase A [Streptomyces ochraceiscleroticus]
 gi|220961028|gb|ACL92980.1| recombinase A [Streptomyces violens]
 gi|220961034|gb|ACL92983.1| recombinase A [Streptomyces purpurogeneiscleroticus]
          Length = 168

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 124/168 (73%), Positives = 146/168 (86%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD   L++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDALILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|160947822|gb|ABX54720.1| RecA protein [Rhizobium sp. CCBAU 13027]
          Length = 166

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 129/160 (80%), Positives = 147/160 (91%), Gaps = 1/160 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LG + S+ E +E VS+GSL LD+ALGIGG PKGRI
Sbjct: 8   VDKSKALEAALSQIERSFGKGSIMKLGGKDSVIE-VETVSTGSLSLDVALGIGGLPKGRI 66

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD IYARKLGVDL+NLLISQPDT
Sbjct: 67  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPIYARKLGVDLENLLISQPDT 126

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+
Sbjct: 127 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGD 166


>gi|160947848|gb|ABX54733.1| RecA protein [Rhizobium leguminosarum]
          Length = 165

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 128/159 (80%), Positives = 147/159 (92%), Gaps = 1/159 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 8   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 66

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 67  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 126

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG
Sbjct: 127 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMG 165


>gi|25992235|gb|AAN77111.1| recombinase A [Desulfitobacterium chlororespirans]
          Length = 192

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 130/192 (67%), Positives = 163/192 (84%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ALH  A++QK GG  AF+DAEHALD +YA+ LGV++ NLL+SQPDTGEQALEI
Sbjct: 1   SSGKTTVALHIAAEAQKLGGVAAFIDAEHALDPVYAKALGVNIDNLLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            + LVRSGA+D+I+IDSVAAL PRAEIEG+MG+S  G+ ARLMSQALRKLT +IS+S   
Sbjct: 61  CEALVRSGAIDVIIIDSVAALVPRAEIEGEMGDSHVGLHARLMSQALRKLTGAISKSHTC 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+R K+G+MFG+PETTTGG ALKFY+SVRL++RR  ++K    + GN+T+VKVVK
Sbjct: 121 VIFINQIREKVGIMFGNPETTTGGRALKFYASVRLEVRRQDTLKQGQDMIGNRTKVKVVK 180

Query: 257 NKMASPFKQVEF 268
           NK+A PFKQ EF
Sbjct: 181 NKVAPPFKQAEF 192


>gi|296516850|emb|CBM35910.1| recombination protein A [Bradyrhizobium sp. CAH5]
          Length = 168

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 126/167 (75%), Positives = 150/167 (89%), Gaps = 1/167 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 120 DVMVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 166


>gi|33087845|gb|AAP93053.1| recombination protein A [Yersinia kristensenii]
          Length = 191

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 128/192 (66%), Positives = 158/192 (82%), Gaps = 2/192 (1%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPES
Sbjct: 2   AALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 59

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI 
Sbjct: 60  SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEIC 119

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L
Sbjct: 120 DALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLL 179

Query: 198 VFINQMRMKIGV 209
           +FINQ+RMKIGV
Sbjct: 180 IFINQIRMKIGV 191


>gi|158147287|gb|ABW22697.1| recA [Bradyrhizobium liaoningense]
 gi|158147289|gb|ABW22698.1| recA [Bradyrhizobium liaoningense]
 gi|158147305|gb|ABW22706.1| recA [Bradyrhizobium liaoningense]
          Length = 157

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 124/157 (78%), Positives = 145/157 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 1   IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E
Sbjct: 61  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FIN
Sbjct: 121 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFIN 157


>gi|325515717|gb|ADZ24472.1| recombination protein A [Bradyrhizobium japonicum]
 gi|325515719|gb|ADZ24473.1| recombination protein A [Bradyrhizobium japonicum]
          Length = 156

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 121/156 (77%), Positives = 145/156 (92%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +Y
Sbjct: 1   SLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           ARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++L
Sbjct: 61  ARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDAL 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           PG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 PGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 156


>gi|301601087|dbj|BAJ13232.1| RecA [Agrobacterium vitis]
          Length = 160

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 128/157 (81%), Positives = 144/157 (91%), Gaps = 1/157 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG+   I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++
Sbjct: 1   IMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEA 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VI
Sbjct: 60  QKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVI 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           DSVAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT+
Sbjct: 120 DSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKLTA 156


>gi|213012382|gb|ACJ38757.1| recombination-repair protein [Vibrio sp. R-123]
          Length = 169

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 118/169 (69%), Positives = 149/169 (88%)

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE
Sbjct: 1   HALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIE 60

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 61  GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 120

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           FY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IMYG
Sbjct: 121 FYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYG 169


>gi|220960990|gb|ACL92961.1| recombinase A [Streptomyces chattanoogensis]
          Length = 168

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 122/168 (72%), Positives = 147/168 (87%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR++E+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVIEVYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD   L++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDALILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|220961054|gb|ACL92993.1| recombinase A [Streptomyces kasugaensis]
          Length = 168

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 123/168 (73%), Positives = 146/168 (86%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG  AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGAVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD   L++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDALILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|156766467|gb|ABU94868.1| recombination protein A [Bradyrhizobium sp. Dp6.5]
          Length = 170

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 124/171 (72%), Positives = 152/171 (88%), Gaps = 1/171 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG      + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 170


>gi|290889057|gb|ADD69878.1| recombination protein A [Bradyrhizobium elkanii]
 gi|290889089|gb|ADD69894.1| recombination protein A [Bradyrhizobium elkanii]
 gi|290889091|gb|ADD69895.1| recombination protein A [Bradyrhizobium elkanii]
          Length = 157

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 121/157 (77%), Positives = 145/157 (92%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD
Sbjct: 1   SSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG
Sbjct: 61  PVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           ++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RM
Sbjct: 121 DALPGLQARLMSQALRKLTASINKSHTMVIFINQIRM 157


>gi|325515715|gb|ADZ24471.1| recombination protein A [Bradyrhizobium japonicum]
 gi|325515721|gb|ADZ24474.1| recombination protein A [Bradyrhizobium japonicum]
          Length = 156

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 121/156 (77%), Positives = 145/156 (92%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +Y
Sbjct: 1   SLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           ARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++L
Sbjct: 61  ARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDAL 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           PG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 PGLQARLMSQALRKLTASINKSHTMVIFINQIRMKI 156


>gi|156766445|gb|ABU94857.1| recombination protein A [Bradyrhizobium sp. Ai1a-2]
          Length = 170

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 124/171 (72%), Positives = 152/171 (88%), Gaps = 1/171 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG      + IE VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSMD-IETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGA+
Sbjct: 60  TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 170


>gi|213012370|gb|ACJ38751.1| recombination-repair protein [Vibrio sp. R-86]
          Length = 169

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 118/169 (69%), Positives = 149/169 (88%)

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEI
Sbjct: 1   EHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEI 60

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 61  EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNAL 120

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           KFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IMY
Sbjct: 121 KFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMY 169


>gi|158147283|gb|ABW22695.1| recA [Bradyrhizobium yuanmingense]
 gi|158147293|gb|ABW22700.1| recA [Bradyrhizobium yuanmingense]
          Length = 157

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 123/157 (78%), Positives = 145/157 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 1   IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 61  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FIN
Sbjct: 121 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFIN 157


>gi|301601083|dbj|BAJ13230.1| RecA [Agrobacterium vitis]
          Length = 160

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 128/157 (81%), Positives = 144/157 (91%), Gaps = 1/157 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG+   I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++
Sbjct: 1   IMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEA 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VI
Sbjct: 60  QKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVI 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           DSVAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT+
Sbjct: 120 DSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKLTA 156


>gi|301601060|dbj|BAJ13219.1| RecA [Agrobacterium vitis]
          Length = 160

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 126/148 (85%), Positives = 139/148 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 13  VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGVCAFVDAE 72

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTP+AEIE
Sbjct: 73  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPKAEIE 132

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISR 192
           G+MG+SLPGMQARLMSQALRKLT SISR
Sbjct: 133 GEMGDSLPGMQARLMSQALRKLTGSISR 160


>gi|156766425|gb|ABU94847.1| recombination protein A [Bradyrhizobium sp. Wall12]
 gi|156766435|gb|ABU94852.1| recombination protein A [Bradyrhizobium sp. tpma1.5]
 gi|156766439|gb|ABU94854.1| recombination protein A [Bradyrhizobium sp. Dr3b-11]
 gi|156766441|gb|ABU94855.1| recombination protein A [Bradyrhizobium sp. Cj3.3]
          Length = 170

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 125/171 (73%), Positives = 151/171 (88%), Gaps = 1/171 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG      + +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 DVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 170


>gi|25992243|gb|AAN77115.1| recombinase A [Desulfitobacterium sp. Viet-1]
          Length = 192

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 130/192 (67%), Positives = 163/192 (84%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ALH  A++QK GG  AF+DAEHALD +YA+ LGV++ NLL+SQPDTGEQALEI
Sbjct: 1   SSGKTTVALHIAAEAQKLGGVAAFIDAEHALDPVYAKALGVNIDNLLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            + LVRSGA+DI++IDSVAAL PRAEIEG+MG+S  G+ ARLMSQALRKLT +IS+S   
Sbjct: 61  CEALVRSGAIDIVIIDSVAALVPRAEIEGEMGDSHVGLHARLMSQALRKLTGAISKSNTC 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+R K+G+MFG+PETTTGG ALKFY+SVRL++RR  ++K    + GN+T+VKVVK
Sbjct: 121 VIFINQIREKVGIMFGNPETTTGGRALKFYASVRLEVRRQDTLKQGQDMIGNRTKVKVVK 180

Query: 257 NKMASPFKQVEF 268
           NK+A PFKQ EF
Sbjct: 181 NKVAPPFKQAEF 192


>gi|37362719|gb|AAQ91336.1| RecA [Escherichia coli]
 gi|39754614|gb|AAR30798.1| RecA protein [Escherichia coli]
 gi|39754616|gb|AAR30799.1| RecA protein [Escherichia coli]
 gi|39754618|gb|AAR30800.1| RecA protein [Escherichia coli]
 gi|39754620|gb|AAR30801.1| RecA protein [Escherichia coli]
 gi|39754622|gb|AAR30802.1| RecA protein [Escherichia coli]
 gi|39754624|gb|AAR30803.1| RecA protein [Escherichia coli]
 gi|39754626|gb|AAR30804.1| RecA protein [Escherichia coli]
 gi|39754628|gb|AAR30805.1| RecA protein [Escherichia coli]
 gi|39754630|gb|AAR30806.1| RecA protein [Escherichia coli]
 gi|39754632|gb|AAR30807.1| RecA protein [Escherichia coli]
 gi|39754634|gb|AAR30808.1| RecA protein [Escherichia coli]
 gi|39754636|gb|AAR30809.1| RecA protein [Escherichia coli]
 gi|39754638|gb|AAR30810.1| RecA protein [Escherichia coli]
 gi|39754640|gb|AAR30811.1| RecA protein [Escherichia coli]
 gi|39754642|gb|AAR30812.1| RecA protein [Escherichia coli]
 gi|39754644|gb|AAR30813.1| RecA protein [Escherichia coli]
 gi|39754646|gb|AAR30814.1| RecA protein [Escherichia coli]
 gi|39754648|gb|AAR30815.1| RecA protein [Escherichia coli]
 gi|39754650|gb|AAR30816.1| RecA protein [Escherichia coli]
 gi|39754652|gb|AAR30817.1| RecA protein [Escherichia coli]
 gi|39754654|gb|AAR30818.1| RecA protein [Escherichia coli]
 gi|39754656|gb|AAR30819.1| RecA protein [Escherichia coli]
 gi|39754658|gb|AAR30820.1| RecA protein [Escherichia coli]
 gi|39754660|gb|AAR30821.1| RecA protein [Escherichia coli]
 gi|39754662|gb|AAR30822.1| RecA protein [Escherichia coli]
 gi|39754664|gb|AAR30823.1| RecA protein [Escherichia coli]
 gi|39754666|gb|AAR30824.1| RecA protein [Escherichia coli]
 gi|39754668|gb|AAR30825.1| RecA protein [Escherichia coli]
 gi|39754670|gb|AAR30826.1| RecA protein [Escherichia coli NU14]
 gi|39754672|gb|AAR30827.1| RecA protein [Escherichia coli]
 gi|39754674|gb|AAR30828.1| RecA protein [Escherichia coli]
 gi|39754676|gb|AAR30829.1| RecA protein [Escherichia coli]
 gi|39754678|gb|AAR30830.1| RecA protein [Escherichia coli UMN026]
 gi|39754680|gb|AAR30831.1| RecA protein [Escherichia coli]
 gi|39754682|gb|AAR30832.1| RecA protein [Escherichia coli]
 gi|51101217|gb|AAT95411.1| RecA [Escherichia fergusonii ATCC 35469]
 gi|86449959|gb|ABC96173.1| RecA protein [Escherichia coli]
 gi|86449961|gb|ABC96174.1| RecA protein [Escherichia coli]
 gi|86449963|gb|ABC96175.1| RecA protein [Escherichia coli]
 gi|86449965|gb|ABC96176.1| RecA protein [Escherichia coli]
 gi|86449967|gb|ABC96177.1| RecA protein [Escherichia coli]
 gi|294856523|gb|ADF45199.1| DNA strand exchange and recombination protein [Escherichia sp.
           B827]
 gi|294856525|gb|ADF45200.1| DNA strand exchange and recombination protein [Escherichia sp.
           E1492]
 gi|294856527|gb|ADF45201.1| DNA strand exchange and recombination protein [Escherichia sp.
           E807]
 gi|294856529|gb|ADF45202.1| DNA strand exchange and recombination protein [Escherichia sp.
           H442]
 gi|294856531|gb|ADF45203.1| DNA strand exchange and recombination protein [Escherichia sp.
           M863]
 gi|294856533|gb|ADF45204.1| DNA strand exchange and recombination protein [Escherichia sp.
           TW10509]
 gi|294856535|gb|ADF45205.1| DNA strand exchange and recombination protein [Escherichia sp.
           TW11930]
 gi|294856537|gb|ADF45206.1| DNA strand exchange and recombination protein [Escherichia sp.
           TW11966]
 gi|294856539|gb|ADF45207.1| DNA strand exchange and recombination protein [Escherichia sp.
           B1147]
 gi|294856541|gb|ADF45208.1| DNA strand exchange and recombination protein [Escherichia sp.
           TW09231]
 gi|294856543|gb|ADF45209.1| DNA strand exchange and recombination protein [Escherichia sp.
           TW09276]
 gi|294856545|gb|ADF45210.1| DNA strand exchange and recombination protein [Escherichia sp.
           TW09254]
 gi|294856547|gb|ADF45211.1| DNA strand exchange and recombination protein [Escherichia sp.
           TW09266]
 gi|294856549|gb|ADF45212.1| DNA strand exchange and recombination protein [Escherichia sp.
           TA04]
 gi|294856551|gb|ADF45213.1| DNA strand exchange and recombination protein [Escherichia sp.
           B685]
 gi|294856553|gb|ADF45214.1| DNA strand exchange and recombination protein [Escherichia sp.
           TW14182]
 gi|294856555|gb|ADF45215.1| DNA strand exchange and recombination protein [Escherichia albertii
           TW11588]
 gi|294856557|gb|ADF45216.1| DNA strand exchange and recombination protein [Escherichia sp.
           H605]
 gi|294856559|gb|ADF45217.1| DNA strand exchange and recombination protein [Escherichia sp. B49]
 gi|294856561|gb|ADF45218.1| DNA strand exchange and recombination protein [Escherichia sp.
           TW09308]
 gi|294856563|gb|ADF45219.1| DNA strand exchange and recombination protein [Escherichia sp.
           B1225]
 gi|294856565|gb|ADF45220.1| DNA strand exchange and recombination protein [Escherichia sp.
           B646]
 gi|294856567|gb|ADF45221.1| DNA strand exchange and recombination protein [Escherichia sp.
           E1118]
 gi|294856569|gb|ADF45222.1| DNA strand exchange and recombination protein [Escherichia sp.
           E1195]
 gi|294856571|gb|ADF45223.1| DNA strand exchange and recombination protein [Escherichia sp.
           E1196]
 gi|294856573|gb|ADF45224.1| DNA strand exchange and recombination protein [Escherichia sp.
           E471]
 gi|294856575|gb|ADF45225.1| DNA strand exchange and recombination protein [Escherichia sp.
           E472]
 gi|294856577|gb|ADF45226.1| DNA strand exchange and recombination protein [Escherichia sp.
           E620]
 gi|294856579|gb|ADF45227.1| DNA strand exchange and recombination protein [Escherichia sp.
           M1108]
 gi|294856581|gb|ADF45228.1| DNA strand exchange and recombination protein [Escherichia sp.
           TA290]
 gi|294856583|gb|ADF45229.1| DNA strand exchange and recombination protein [Escherichia sp.
           TW14263]
 gi|294856587|gb|ADF45231.1| DNA strand exchange and recombination protein [Escherichia sp.
           TW14265]
 gi|294856589|gb|ADF45232.1| DNA strand exchange and recombination protein [Escherichia sp.
           TW14266]
 gi|294856591|gb|ADF45233.1| DNA strand exchange and recombination protein [Escherichia sp.
           TW14267]
 gi|294856593|gb|ADF45234.1| DNA strand exchange and recombination protein [Escherichia sp.
           RL325/96]
 gi|294856595|gb|ADF45235.1| DNA strand exchange and recombination protein [Escherichia sp.
           Z205]
 gi|294856597|gb|ADF45236.1| DNA strand exchange and recombination protein [Escherichia
           albertii]
 gi|294856599|gb|ADF45237.1| DNA strand exchange and recombination protein [Escherichia
           albertii]
 gi|294856601|gb|ADF45238.1| DNA strand exchange and recombination protein [Escherichia
           albertii]
 gi|294856603|gb|ADF45239.1| DNA strand exchange and recombination protein [Escherichia
           albertii]
 gi|294856605|gb|ADF45240.1| DNA strand exchange and recombination protein [Escherichia
           albertii]
 gi|294856607|gb|ADF45241.1| DNA strand exchange and recombination protein [Escherichia
           albertii]
 gi|294856609|gb|ADF45242.1| DNA strand exchange and recombination protein [Escherichia
           albertii]
 gi|294856611|gb|ADF45243.1| DNA strand exchange and recombination protein [Escherichia coli]
 gi|294856613|gb|ADF45244.1| DNA strand exchange and recombination protein [Escherichia coli]
 gi|294856615|gb|ADF45245.1| DNA strand exchange and recombination protein [Escherichia
           fergusonii]
 gi|294856617|gb|ADF45246.1| DNA strand exchange and recombination protein [Escherichia
           fergusonii]
 gi|294856619|gb|ADF45247.1| DNA strand exchange and recombination protein [Escherichia
           fergusonii]
          Length = 169

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 120/169 (71%), Positives = 152/169 (89%)

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           ARKLGVD+ NLL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S 
Sbjct: 1   ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 60

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
            G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRL
Sbjct: 61  MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRL 120

Query: 232 DIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           DIRR+G++K+ +++ G++TRVKVVKNK+A+PFKQ EF I+YGEGI+F+G
Sbjct: 121 DIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYG 169


>gi|58081977|emb|CAG29682.2| recombinase A [Propionibacterium cyclohexanicum]
          Length = 207

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 125/180 (69%), Positives = 151/180 (83%), Gaps = 1/180 (0%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARKLGVDL 119
            GG P+GR+VEIYGPESSGKTT+ALH IA +Q  GG CAF+DAEHALD ++   +LGVD 
Sbjct: 28  FGGLPRGRMVEIYGPESSGKTTVALHAIASAQAQGGICAFIDAEHALDPTLRLTRLGVDT 87

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
             LL+SQPD GEQALEI D LVRSGA++++VIDSVAALTPRAEIEG+MG++  G+QARLM
Sbjct: 88  DALLVSQPDNGEQALEIADTLVRSGALELLVIDSVAALTPRAEIEGEMGDNHVGLQARLM 147

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           SQALRK+T ++  +    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ S+
Sbjct: 148 SQALRKMTGALQNANTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRIESL 207


>gi|29652096|gb|AAO87710.1| RecA [Listeria monocytogenes]
          Length = 189

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 126/190 (66%), Positives = 158/190 (83%), Gaps = 2/190 (1%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESS
Sbjct: 2   ALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESS 59

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI +
Sbjct: 60  GKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAE 119

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +
Sbjct: 120 ALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAI 179

Query: 199 FINQMRMKIG 208
           FINQ+R K+G
Sbjct: 180 FINQIREKVG 189


>gi|301601075|dbj|BAJ13226.1| RecA [Agrobacterium vitis]
          Length = 159

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 126/148 (85%), Positives = 139/148 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 12  VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGVCAFVDAE 71

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTP+AEIE
Sbjct: 72  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPKAEIE 131

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISR 192
           G+MG+SLPGMQARLMSQALRKLT SISR
Sbjct: 132 GEMGDSLPGMQARLMSQALRKLTGSISR 159


>gi|156766455|gb|ABU94862.1| recombination protein A [Bradyrhizobium sp. 1808N]
 gi|156766457|gb|ABU94863.1| recombination protein A [Bradyrhizobium sp. 5028A]
 gi|156766463|gb|ABU94866.1| recombination protein A [Bradyrhizobium sp. 5493M]
          Length = 170

 Score =  263 bits (672), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 125/171 (73%), Positives = 151/171 (88%), Gaps = 1/171 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG      + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 DVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 170


>gi|301601062|dbj|BAJ13220.1| RecA [Agrobacterium vitis]
          Length = 159

 Score =  263 bits (672), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 126/148 (85%), Positives = 139/148 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 12  VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGVCAFVDAE 71

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTP+AEIE
Sbjct: 72  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPKAEIE 131

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISR 192
           G+MG+SLPGMQARLMSQALRKLT SISR
Sbjct: 132 GEMGDSLPGMQARLMSQALRKLTGSISR 159


>gi|296044720|gb|ADG85769.1| RecA [Vibrio sp. WH134]
          Length = 167

 Score =  263 bits (672), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 120/167 (71%), Positives = 147/167 (88%)

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +QK G TCAF+DAEHALD IYA KLGVD+  LL+SQPDTGEQALEI D L RSGA+D+
Sbjct: 1   AAAQKVGKTCAFIDAEHALDPIYAAKLGVDIDALLVSQPDTGEQALEICDALARSGAIDV 60

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG
Sbjct: 61  MVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIG 120

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           VMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVV
Sbjct: 121 VMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVV 167


>gi|213012460|gb|ACJ38796.1| recombination-repair protein [Vibrio sp. R-656]
          Length = 171

 Score =  263 bits (672), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 118/171 (69%), Positives = 151/171 (88%)

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           +DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+
Sbjct: 1   IDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPK 60

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
           AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGG
Sbjct: 61  AEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGG 120

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           NALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    I+
Sbjct: 121 NALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQII 171


>gi|318084944|gb|ADV39362.1| recombinase A [Streptomyces phaeochromogenes]
          Length = 168

 Score =  263 bits (672), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 123/168 (73%), Positives = 145/168 (86%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+T ++ +S    +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITGALHQSGTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|207080797|gb|ACI22742.1| RecA [Rhizobium sp. J3-N4]
          Length = 162

 Score =  263 bits (672), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 128/159 (80%), Positives = 145/159 (91%), Gaps = 1/159 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG+   I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TI
Sbjct: 4   KGSVMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 62

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 63  AEAQKKGGVCAFVDAEHALDPVYARKLGVDLQGLLISQPDTGEQALEITDTLVRSGAIDV 122

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           +VIDSVAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT
Sbjct: 123 LVIDSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKLT 161


>gi|255989409|gb|ACU51569.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
          Length = 150

 Score =  263 bits (672), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 123/150 (82%), Positives = 142/150 (94%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +
Sbjct: 1   GSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPV 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+S
Sbjct: 61  YARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDS 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFI 200
           LPG+QARLMSQALRKLT+SIS+S  +++F+
Sbjct: 121 LPGLQARLMSQALRKLTASISKSNTMVIFV 150


>gi|255027584|ref|ZP_05299570.1| recombinase A [Listeria monocytogenes FSL J2-003]
          Length = 228

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 121/203 (59%), Positives = 164/203 (80%)

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I
Sbjct: 1   EQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVI 60

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR   +K    + GN+T
Sbjct: 61  NKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT 120

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYGEGIS  GEL+D+  +  +++KSG+W+S+K +R+GQGR
Sbjct: 121 KIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGR 180

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           EN+K +L+E+ +I + I   +R+
Sbjct: 181 ENAKQYLKEHTDIRDEISKRVRE 203


>gi|160375145|gb|ABX38948.1| recombinase protein A [Mesorhizobium caraganae]
          Length = 165

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 126/161 (78%), Positives = 147/161 (91%), Gaps = 1/161 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 5   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 64  VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+S
Sbjct: 124 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDS 164


>gi|50982193|gb|AAT91762.1| recombination protein A [Bradyrhizobium canariense bv. genistearum]
          Length = 170

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 122/159 (76%), Positives = 145/159 (91%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE
Sbjct: 12  VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 71

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E
Sbjct: 72  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELE 131

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++F NQ+
Sbjct: 132 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFFNQI 170


>gi|301601089|dbj|BAJ13233.1| RecA [Agrobacterium vitis]
          Length = 160

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 128/157 (81%), Positives = 144/157 (91%), Gaps = 1/157 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG+   I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++
Sbjct: 1   IMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEA 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VI
Sbjct: 60  QKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVI 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           DSVAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT+
Sbjct: 120 DSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKLTA 156


>gi|25992241|gb|AAN77114.1| recombinase A [Desulfitobacterium sp. PCE1]
          Length = 192

 Score =  263 bits (671), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 129/192 (67%), Positives = 163/192 (84%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ALH  A++QK GG  AF+DAEHALD +YA+ LGV++ NLL+SQPDTGEQALEI
Sbjct: 1   SSGKTTVALHIAAEAQKLGGVAAFIDAEHALDPVYAKALGVNIDNLLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            + LVRSGA+D+++IDSVAAL PRAEIEG+MG+S  G+ ARLMSQALRKLT +IS+S   
Sbjct: 61  CEALVRSGAIDVVIIDSVAALVPRAEIEGEMGDSHVGLHARLMSQALRKLTGAISKSNTC 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+R K+G+MFG+PETTTGG ALKFY+SVRL++RR  ++K    + GN+T+VKVVK
Sbjct: 121 VIFINQIREKVGIMFGNPETTTGGRALKFYASVRLEVRRQDTLKQGQDMIGNRTKVKVVK 180

Query: 257 NKMASPFKQVEF 268
           NK+A PFKQ EF
Sbjct: 181 NKVAPPFKQAEF 192


>gi|156766423|gb|ABU94846.1| recombination protein A [Bradyrhizobium sp. Wall9]
          Length = 170

 Score =  263 bits (671), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 124/171 (72%), Positives = 151/171 (88%), Gaps = 1/171 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG      + +E +SSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSMD-VETISSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 DVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 170


>gi|325515701|gb|ADZ24464.1| recombination protein A [Bradyrhizobium sp. CCBAU 15778]
          Length = 155

 Score =  263 bits (671), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 121/155 (78%), Positives = 144/155 (92%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +Y
Sbjct: 1   SLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           ARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++L
Sbjct: 61  ARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDAL 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           PG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 PGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 155


>gi|301601093|dbj|BAJ13235.1| RecA [Agrobacterium vitis]
          Length = 160

 Score =  263 bits (671), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 126/148 (85%), Positives = 139/148 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 13  VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGVCAFVDAE 72

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTP+AEIE
Sbjct: 73  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPKAEIE 132

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISR 192
           G+MG+SLPGMQARLMSQALRKLT SISR
Sbjct: 133 GEMGDSLPGMQARLMSQALRKLTGSISR 160


>gi|220960976|gb|ACL92954.1| recombinase A [Streptomyces hygroscopicus subsp. hygroscopicus]
          Length = 168

 Score =  263 bits (671), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 121/168 (72%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE++GPESSGKTTL LH +A +Q+ GGT AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVFGPESSGKTTLTLHAVANAQRAGGTVAFVDAEHALDPDYAQKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD  +L++SQPD GEQALEITDML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDSLILSQPDNGEQALEITDMLIRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+T ++++SK   +FINQ+R K+GVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITGALNQSKTTAIFINQLREKVGVMFGSPETTTGGRAL 168


>gi|156766447|gb|ABU94858.1| recombination protein A [Bradyrhizobium sp. Lh10]
 gi|156766449|gb|ABU94859.1| recombination protein A [Bradyrhizobium sp. Kus-2]
 gi|156766451|gb|ABU94860.1| recombination protein A [Bradyrhizobium sp. Vgn-2]
          Length = 170

 Score =  263 bits (671), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 124/171 (72%), Positives = 151/171 (88%), Gaps = 1/171 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG      + +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 DVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSHTMV 170


>gi|157000355|gb|ABV00477.1| recombinase A [Streptomyces cinereorectus]
          Length = 168

 Score =  263 bits (671), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 123/168 (73%), Positives = 145/168 (86%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VEIYGPESSGKTTL LH  A +Q+ GGT AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGIPRGRVVEIYGPESSGKTTLTLHLAANAQRAGGTVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD   LL+SQPDTGEQALEITDML+RSGA+D+++IDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDALLVSQPDTGEQALEITDMLIRSGAIDLVIIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+  ++++S    VFINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKIAGALNQSNTTAVFINQLREKIGVMFGSPETTTGGRAL 168


>gi|290889095|gb|ADD69897.1| recombination protein A [Rhizobium alamii]
          Length = 156

 Score =  263 bits (671), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 122/156 (78%), Positives = 146/156 (93%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDA+HALD 
Sbjct: 1   TGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAKHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YARKLGV+L+NLLISQPDTG+QALEITD LVRSGA+D++V++SVAALTPRA+I+G MG+
Sbjct: 61  VYARKLGVNLQNLLISQPDTGKQALEITDTLVRSGAIDVLVVNSVAALTPRAKIKGKMGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RM
Sbjct: 121 SLPGLQARLMSQALRKLTASISKSNTMVIFINQIRM 156


>gi|156766459|gb|ABU94864.1| recombination protein A [Bradyrhizobium sp. 5563D]
          Length = 170

 Score =  262 bits (670), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 124/171 (72%), Positives = 151/171 (88%), Gaps = 1/171 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG      + +E +SSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSMD-VEAISSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 DVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 170


>gi|29651967|gb|AAO87646.1| RecA [Listeria monocytogenes]
          Length = 183

 Score =  262 bits (670), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 125/185 (67%), Positives = 155/185 (83%), Gaps = 2/185 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA
Sbjct: 1   GSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRSGAVD++
Sbjct: 59  EVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDML 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+R K+GV
Sbjct: 119 VIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVGV 178

Query: 210 MFGSP 214
           MFG+P
Sbjct: 179 MFGNP 183


>gi|311337025|gb|ADP89903.1| recombination protein RecA [Bradyrhizobium jicamae]
          Length = 160

 Score =  262 bits (670), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 119/160 (74%), Positives = 146/160 (91%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VS+GSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALH +A+ Q+ GG CAF+DAEH
Sbjct: 1   ETVSTGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHCVAEGQRKGGICAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGA+D++V+DSVAAL P+AE+EG
Sbjct: 61  ALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALVPKAELEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RM
Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRM 160


>gi|146432116|gb|ABQ41040.1| recombination-repair protein [Vibrio campbellii]
 gi|146432118|gb|ABQ41041.1| recombination-repair protein [Vibrio campbellii]
          Length = 165

 Score =  262 bits (670), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 118/165 (71%), Positives = 148/165 (89%)

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AF+DAEHALD +YA KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALT
Sbjct: 1   AFIDAEHALDPVYAMKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALT 60

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           P+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTT
Sbjct: 61  PKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTT 120

Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           GGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PF
Sbjct: 121 GGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPF 165


>gi|33087827|gb|AAP93044.1| recombination protein A [Yersinia intermedia]
          Length = 190

 Score =  262 bits (670), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 127/191 (66%), Positives = 157/191 (82%), Gaps = 2/191 (1%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPES
Sbjct: 2   AALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 59

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI 
Sbjct: 60  SGKTTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEIC 119

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L
Sbjct: 120 DALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLL 179

Query: 198 VFINQMRMKIG 208
           +FINQ+RMKIG
Sbjct: 180 IFINQIRMKIG 190


>gi|156766417|gb|ABU94843.1| recombination protein A [Bradyrhizobium sp. Pter7]
          Length = 170

 Score =  262 bits (670), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 124/171 (72%), Positives = 151/171 (88%), Gaps = 1/171 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG      + +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A+ Q+ GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEGQRKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 DVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 170


>gi|301318402|gb|ADK67116.1| RecA protein [Stenotrophomonas terrae]
          Length = 182

 Score =  262 bits (670), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 136/182 (74%), Positives = 158/182 (86%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +E++ +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EPVEIIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKLGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+V+DSVAALTPRAE
Sbjct: 61  AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDIVVVDSVAALTPRAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS  +++FINQ+RMKIGVM    SPE TTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPEVTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|325515711|gb|ADZ24469.1| recombination protein A [Bradyrhizobium japonicum]
          Length = 155

 Score =  262 bits (670), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 120/155 (77%), Positives = 144/155 (92%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +Y
Sbjct: 1   SLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           ARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++L
Sbjct: 61  ARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDAL 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           PG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 PGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 155


>gi|29652070|gb|AAO87697.1| RecA [Listeria monocytogenes]
          Length = 183

 Score =  262 bits (670), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 125/184 (67%), Positives = 154/184 (83%), Gaps = 2/184 (1%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA+ 
Sbjct: 1   IMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEV 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRSGAVD++VI
Sbjct: 59  QAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLVI 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+R K+GVMF
Sbjct: 119 DSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVGVMF 178

Query: 212 GSPE 215
           G+PE
Sbjct: 179 GNPE 182


>gi|156766443|gb|ABU94856.1| recombination protein A [Bradyrhizobium sp. Pp2-4]
          Length = 170

 Score =  262 bits (669), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 123/171 (71%), Positives = 151/171 (88%), Gaps = 1/171 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG      + +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGA+
Sbjct: 60  TVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 170


>gi|325512809|gb|ADZ23593.1| RecA [Bradyrhizobium japonicum]
          Length = 155

 Score =  262 bits (669), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 120/155 (77%), Positives = 144/155 (92%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           LGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YA
Sbjct: 1   LGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           RKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LP
Sbjct: 61  RKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALP 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           G+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 GLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 155


>gi|254055249|gb|ACT64224.1| RecA [Brevibacterium iodinum]
          Length = 186

 Score =  262 bits (669), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 126/187 (67%), Positives = 154/187 (82%), Gaps = 2/187 (1%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           R YGKGAIM+LG    + E I  + +GS+ LDIALGIGG P+GR+VEIYGPESSGKTT+A
Sbjct: 2   RNYGKGAIMRLGD--GVREPIASIPTGSVALDIALGIGGLPRGRVVEIYGPESSGKTTVA 59

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH +A +QK GG   F+DAEHALD  YA+KLGVD   LL+SQPDTGEQALEI DML+RSG
Sbjct: 60  LHAVANAQKAGGIAGFIDAEHALDPEYAKKLGVDTDQLLVSQPDTGEQALEIADMLIRSG 119

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T ++++SK   +FINQ+R
Sbjct: 120 ALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGALAQSKTTAIFINQLR 179

Query: 205 MKIGVMF 211
            K+GV F
Sbjct: 180 EKVGVFF 186


>gi|62637703|gb|AAX92556.1| recombination protein A [Rhizobium etli bv. phaseoli]
 gi|62637705|gb|AAX92557.1| recombination protein A [Rhizobium etli bv. phaseoli]
 gi|62637707|gb|AAX92558.1| recombination protein A [Rhizobium etli bv. phaseoli]
 gi|62637709|gb|AAX92559.1| recombination protein A [Rhizobium etli bv. phaseoli]
 gi|62637711|gb|AAX92560.1| recombination protein A [Rhizobium etli bv. phaseoli]
 gi|62637713|gb|AAX92561.1| recombination protein A [Rhizobium etli bv. phaseoli]
 gi|62637715|gb|AAX92562.1| recombination protein A [Rhizobium etli bv. phaseoli]
 gi|62637717|gb|AAX92563.1| recombination protein A [Rhizobium etli bv. phaseoli]
 gi|62637719|gb|AAX92564.1| recombination protein A [Rhizobium etli bv. phaseoli]
 gi|62637723|gb|AAX92566.1| recombination protein A [Rhizobium etli bv. phaseoli]
 gi|62637725|gb|AAX92567.1| recombination protein A [Rhizobium etli bv. mimosae]
 gi|62637727|gb|AAX92568.1| recombination protein A [Rhizobium etli bv. phaseoli]
          Length = 148

 Score =  262 bits (669), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 124/146 (84%), Positives = 140/146 (95%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSLGLDIALG+GG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL
Sbjct: 1   ISTGSLGLDIALGVGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+M
Sbjct: 61  DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRS 193
           G+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 121 GDSLPGLQARLMSQALRKLTASISKS 146


>gi|152143447|gb|ABS29459.1| RecA [Rhizobium fabae]
 gi|152143449|gb|ABS29460.1| RecA [Rhizobium fabae]
 gi|152143451|gb|ABS29461.1| RecA [Rhizobium fabae]
 gi|152143453|gb|ABS29462.1| RecA [Rhizobium fabae]
 gi|152143455|gb|ABS29463.1| RecA [Rhizobium fabae]
 gi|152143457|gb|ABS29464.1| RecA [Rhizobium fabae]
 gi|255989343|gb|ACU51536.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989347|gb|ACU51538.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989349|gb|ACU51539.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989351|gb|ACU51540.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989353|gb|ACU51541.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989355|gb|ACU51542.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989357|gb|ACU51543.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989359|gb|ACU51544.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989361|gb|ACU51545.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989363|gb|ACU51546.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989365|gb|ACU51547.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989367|gb|ACU51548.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989369|gb|ACU51549.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989371|gb|ACU51550.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989373|gb|ACU51551.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989375|gb|ACU51552.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989377|gb|ACU51553.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989379|gb|ACU51554.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989381|gb|ACU51555.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989383|gb|ACU51556.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989385|gb|ACU51557.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989387|gb|ACU51558.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989389|gb|ACU51559.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989391|gb|ACU51560.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989393|gb|ACU51561.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989397|gb|ACU51563.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989399|gb|ACU51564.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989403|gb|ACU51566.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989405|gb|ACU51567.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989411|gb|ACU51570.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989413|gb|ACU51571.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989415|gb|ACU51572.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
          Length = 149

 Score =  262 bits (669), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 123/149 (82%), Positives = 141/149 (94%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +
Sbjct: 1   GSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPV 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+S
Sbjct: 61  YARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDS 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVF 199
           LPG+QARLMSQALRKLT+SIS+S  +++F
Sbjct: 121 LPGLQARLMSQALRKLTASISKSNTMVIF 149


>gi|255989401|gb|ACU51565.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
          Length = 150

 Score =  262 bits (669), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 123/149 (82%), Positives = 141/149 (94%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +
Sbjct: 1   GSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPV 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+S
Sbjct: 61  YARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDS 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVF 199
           LPG+QARLMSQALRKLT+SIS+S  +++F
Sbjct: 121 LPGLQARLMSQALRKLTASISKSNTMVIF 149


>gi|25992237|gb|AAN77112.1| recombinase A [Desulfitobacterium dehalogenans ATCC 51507]
          Length = 192

 Score =  262 bits (669), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 129/192 (67%), Positives = 162/192 (84%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ALH  A +QK GG  AF+DAEHALD +YA+ LGV++ NLL+SQPDTGEQALEI
Sbjct: 1   SSGKTTVALHIAADAQKLGGVAAFIDAEHALDPVYAKALGVNIDNLLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            + LVRSGA+D+++IDSVAAL PRAEIEG+MG+S  G+ ARLMSQALRKLT +IS+S   
Sbjct: 61  CEALVRSGAIDVVIIDSVAALVPRAEIEGEMGDSHVGLHARLMSQALRKLTGAISKSNTC 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+R K+G+MFG+PETTTGG ALKFY+SVRL++RR  ++K    + GN+T+VKVVK
Sbjct: 121 VIFINQIREKVGIMFGNPETTTGGRALKFYASVRLEVRRQDTLKQGQDMIGNRTKVKVVK 180

Query: 257 NKMASPFKQVEF 268
           NK+A PFKQ EF
Sbjct: 181 NKVAPPFKQAEF 192


>gi|160947838|gb|ABX54728.1| RecA protein [Bradyrhizobium elkanii]
          Length = 167

 Score =  261 bits (668), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 123/168 (73%), Positives = 149/168 (88%), Gaps = 1/168 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG++M+LG      + +E +SSGSLGLDIALG+GG PKGR+VEIYGPESSGKTT
Sbjct: 1   IERSFGKGSVMKLGKNDRSMD-VETISSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVR
Sbjct: 60  LALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           SGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI
Sbjct: 120 SGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASI 167


>gi|160947816|gb|ABX54717.1| RecA protein [Bradyrhizobium elkanii]
          Length = 167

 Score =  261 bits (668), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 123/168 (73%), Positives = 149/168 (88%), Gaps = 1/168 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG++M+LG      + +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTT
Sbjct: 1   IERSFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVR
Sbjct: 60  LALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           SGA+D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI
Sbjct: 120 SGAIDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASI 167


>gi|312284978|gb|ADQ64241.1| recombinase A [Bradyrhizobium sp. ISLU203]
 gi|312284994|gb|ADQ64249.1| recombinase A [Bradyrhizobium sp. ISLU40]
          Length = 165

 Score =  261 bits (668), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 124/166 (74%), Positives = 149/166 (89%), Gaps = 1/166 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG++M+LG      + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT
Sbjct: 1   GKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHT 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           +A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD
Sbjct: 60  VAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVD 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 120 VLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 165


>gi|306569711|gb|ADN03350.1| RecA [Bradyrhizobium liaoningense]
          Length = 155

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 122/155 (78%), Positives = 144/155 (92%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD
Sbjct: 1   SSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG
Sbjct: 61  PVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           ++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 121 DALPGLQARLMSQALRKLTASINKSNTMVIFINQI 155


>gi|156766453|gb|ABU94861.1| recombination protein A [Bradyrhizobium sp. aeky10]
          Length = 170

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 122/171 (71%), Positives = 151/171 (88%), Gaps = 1/171 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG      + +E +SSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSMD-VETISSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSHTMV 170


>gi|226973215|gb|ACO95150.1| recombinase A [Bradyrhizobium sp. RSB6]
          Length = 170

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 122/171 (71%), Positives = 151/171 (88%), Gaps = 1/171 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G++M+LG      + +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A
Sbjct: 1   GSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGA+D++
Sbjct: 60  EGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAIDVL 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FI
Sbjct: 120 VVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFI 170


>gi|213950722|gb|ACJ54606.1| recombination protein A [Bradyrhizobium liaoningense]
          Length = 176

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 127/168 (75%), Positives = 149/168 (88%), Gaps = 1/168 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+
Sbjct: 4   KGSIMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTV 62

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD+
Sbjct: 63  AEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDV 122

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           +VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +
Sbjct: 123 LVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTM 170


>gi|33087887|gb|AAP93074.1| recombination protein A [Yersinia pseudotuberculosis]
          Length = 191

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 127/193 (65%), Positives = 157/193 (81%), Gaps = 2/193 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVE
Sbjct: 1   KQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVE 58

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGE
Sbjct: 59  IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGE 118

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ 
Sbjct: 119 QALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 178

Query: 192 RSKCILVFINQMR 204
            +  +L+FINQ+R
Sbjct: 179 NANTLLIFINQIR 191


>gi|37956348|gb|AAP15352.1| RecA [Desulfuromusa kysingii]
          Length = 177

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 126/173 (72%), Positives = 148/173 (85%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GG  AF+DAEHALD  YA+ LGV   +LLISQPDTGEQALEIT+MLVRSGA+D
Sbjct: 4   IAEVQKQGGVAAFIDAEHALDIQYAQNLGVKADDLLISQPDTGEQALEITEMLVRSGAID 63

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++VIDS AALTPRAEIEG+MG+S  G+QARLMSQALRKLT  +S+S C ++FINQ+RMKI
Sbjct: 64  LLVIDSXAALTPRAEIEGEMGDSHMGLQARLMSQALRKLTGIVSKSNCTILFINQIRMKI 123

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           GVMFG+PETTTGGNALKFY SVRLDIRR+ S+K    + G +TRVKVVKNK+A
Sbjct: 124 GVMFGNPETTTGGNALKFYCSVRLDIRRIASLKQGQDVVGGRTRVKVVKNKVA 176


>gi|207080805|gb|ACI22746.1| RecA [Rhizobium sp. J3-51]
          Length = 160

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 127/158 (80%), Positives = 144/158 (91%), Gaps = 1/158 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG+   I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TI
Sbjct: 4   KGSVMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 62

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 63  AEAQKKGGVCAFVDAEHALDPVYARKLGVDLQGLLISQPDTGEQALEITDTLVRSGAIDV 122

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           +VIDSVAALTP+AEIEG+MG+SLPGMQARLMSQALRKL
Sbjct: 123 LVIDSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKL 160


>gi|325305330|gb|ADZ06013.1| RecA [Aeromonas veronii bv. sobria]
          Length = 159

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 121/158 (76%), Positives = 143/158 (90%)

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSV
Sbjct: 2   GKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSV 61

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSP
Sbjct: 62  AALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSP 121

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           ETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+TRV
Sbjct: 122 ETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNETRV 159


>gi|110433557|gb|ABG74450.1| RecA [Rickettsia akari]
          Length = 160

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 121/159 (76%), Positives = 143/159 (89%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA+KLGV++  L+I
Sbjct: 2   PKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELII 61

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEITD L+RSG +D+I+IDSVAAL P++EIEG+MG++    QARLMSQALR
Sbjct: 62  SQPDTGEQALEITDTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALR 121

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           KLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 122 KLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNAL 160


>gi|189016824|gb|ACD70379.1| recombinase protein A [Rhizobium sp. CCBAU 03285]
          Length = 160

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 127/157 (80%), Positives = 145/157 (92%), Gaps = 1/157 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 5   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 64  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEGD
Sbjct: 124 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGD 160


>gi|301601081|dbj|BAJ13229.1| RecA [Agrobacterium vitis]
          Length = 159

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 127/158 (80%), Positives = 144/158 (91%), Gaps = 1/158 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG+   I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK
Sbjct: 1   KLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQK 59

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDS
Sbjct: 60  KGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVIDS 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           VAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT+ +S
Sbjct: 120 VAALTPKAEIEGEMGDSLPGMQARLMSQALRKLTARLS 157


>gi|294856585|gb|ADF45230.1| DNA strand exchange and recombination protein [Escherichia sp.
           TW14264]
          Length = 169

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 119/169 (70%), Positives = 151/169 (89%)

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           ARKLGVD+ NLL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S 
Sbjct: 1   ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 60

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
            G+ AR+MSQA+RKL  ++ +S  +L+ INQ+RMKIGVMFG+PETTTGGNALKFY+SVRL
Sbjct: 61  MGLAARMMSQAMRKLAGNLKQSNTLLILINQIRMKIGVMFGNPETTTGGNALKFYASVRL 120

Query: 232 DIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           DIRR+G++K+ +++ G++TRVKVVKNK+A+PFKQ EF I+YGEGI+F+G
Sbjct: 121 DIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYG 169


>gi|312284970|gb|ADQ64237.1| recombinase A [Bradyrhizobium sp. ISLU101]
 gi|312284972|gb|ADQ64238.1| recombinase A [Bradyrhizobium sp. ISLU12]
 gi|312284976|gb|ADQ64240.1| recombinase A [Bradyrhizobium sp. ISLU8]
          Length = 165

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 125/166 (75%), Positives = 148/166 (89%), Gaps = 1/166 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG++M+LG      + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT
Sbjct: 1   GKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHT 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           +A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD
Sbjct: 60  VAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVD 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 120 VLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 165


>gi|254055247|gb|ACT64223.1| RecA [Pectobacterium carotovorum]
          Length = 186

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 125/188 (66%), Positives = 156/188 (82%), Gaps = 2/188 (1%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTL 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RS
Sbjct: 59  TLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+
Sbjct: 119 GAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQI 178

Query: 204 RMKIGVMF 211
           RMKIGVMF
Sbjct: 179 RMKIGVMF 186


>gi|74268799|emb|CAJ29882.1| recombinase A [Lactobacillus rossiae]
          Length = 174

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 120/174 (68%), Positives = 152/174 (87%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D ALG+GG+P+GRIVE+YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD+ YA  L
Sbjct: 1   DDALGVGGYPRGRIVEVYGPESSGKTTIALHAVAEVQKMGGTAAYIDAENALDAQYAEAL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GV + +LL+SQPDTGEQ LEITD LV SGA+DI+VIDSVAAL PRAEIEG+MG++  G+Q
Sbjct: 61  GVKVDDLLLSQPDTGEQGLEITDALVSSGAIDIVVIDSVAALVPRAEIEGEMGDAHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           ARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+++
Sbjct: 121 ARLMSQALRKLSGTINKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATI 174


>gi|29652184|gb|AAO87753.1| RecA [Listeria monocytogenes]
          Length = 175

 Score =  261 bits (666), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 122/173 (70%), Positives = 149/173 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA+ Q  GGT AF+DAE
Sbjct: 2   ISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRSGAVD++VIDSVAAL PRAEIE
Sbjct: 62  HALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLVIDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
           G+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+R K+GVMFG+PE T
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVGVMFGNPEIT 174


>gi|306569707|gb|ADN03348.1| RecA [Bradyrhizobium yuanmingense]
          Length = 155

 Score =  261 bits (666), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 121/155 (78%), Positives = 144/155 (92%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD
Sbjct: 1   SSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG
Sbjct: 61  PVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           ++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 121 DALPGLQARLMSQALRKLTASINKSNTMVIFINQI 155


>gi|195542194|gb|ACF98307.1| RecA [Rhizobium sp. CCBAU 45121]
          Length = 161

 Score =  261 bits (666), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 122/152 (80%), Positives = 143/152 (94%)

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
           + LG+GG P+GRI++IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLG
Sbjct: 10  MVLGVGGRPRGRIIKIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLG 69

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           VDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QA
Sbjct: 70  VDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQA 129

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           RLMSQALRKLT+SIS+S  +++FINQ+RMKIG
Sbjct: 130 RLMSQALRKLTASISKSNTMVIFINQIRMKIG 161


>gi|156766461|gb|ABU94865.1| recombination protein A [Bradyrhizobium sp. 5111P]
          Length = 170

 Score =  261 bits (666), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 122/171 (71%), Positives = 151/171 (88%), Gaps = 1/171 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG      + IE +SSGSLGLDIALG+GG P+GR+VEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSMD-IETISSGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 170


>gi|13508229|ref|NP_110178.1| recombinase A [Mycoplasma pneumoniae M129]
 gi|2500085|sp|P78014|RECA_MYCPN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|1674029|gb|AAB96000.1| recombination protein RecA [Mycoplasma pneumoniae M129]
 gi|301633104|gb|ADK86658.1| RecA protein [Mycoplasma pneumoniae FH]
          Length = 336

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 133/287 (46%), Positives = 192/287 (66%), Gaps = 1/287 (0%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+ VS+GSL LD ALG GG P GRIVE+YG ESSGKTT+ALH +A  QK G    ++DAE
Sbjct: 37  IKTVSTGSLHLDEALGTGGLPLGRIVELYGNESSGKTTVALHAVASFQKAGKVACYIDAE 96

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
            ALD  YA+ +G+DL  LL++ P  GE A  + + L+++  V +IV+DSVAAL P+ E+E
Sbjct: 97  GALDLSYAKAIGIDLGKLLVAHPKHGENAFALMESLIKTNKVALIVVDSVAALIPKQELE 156

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+M +   G+ AR+MS+ LR++ S +  S   L+FINQ+R K GVMFG+ E TTGG ALK
Sbjct: 157 GNMDDQTIGLHARMMSKGLRRVQSLLPESDTCLLFINQLREKPGVMFGNGEVTTGGRALK 216

Query: 225 FYSSVRLDIRRVGSIKDK-DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           FY+S+R++ +R   +KD+  +  G ++++ V KNK+A PF     +IM+  GI +  E+I
Sbjct: 217 FYASMRMEAKRSELLKDRFGNYVGIKSKLTVSKNKVARPFGVAFLEIMFNRGIVYEHEVI 276

Query: 284 DLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
           +L +K ++V +S   +SFK Q +  G+E     L E  E+ E I+ L
Sbjct: 277 ELALKHNVVVRSDNAYSFKSQNIAIGKEKLFSVLAEKPELFEQIKQL 323


>gi|77412952|ref|ZP_00789155.1| recA protein [Streptococcus agalactiae 515]
 gi|77160964|gb|EAO72072.1| recA protein [Streptococcus agalactiae 515]
          Length = 251

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 128/237 (54%), Positives = 177/237 (74%), Gaps = 5/237 (2%)

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+
Sbjct: 1   MSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAM 60

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK--- 240
           RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+R    IK   
Sbjct: 61  RKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRGNTQIKGTG 120

Query: 241 -DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
             KD   G +T++KVVKNK+A PF++   +IMYGEGIS  GELI +     I+ K+GAW+
Sbjct: 121 EHKDHNVGKETKIKVVKNKVAPPFREAFVEIMYGEGISRTGELIKIASDLDIIQKAGAWY 180

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA-DSLLQEPAINTKDDAD 355
           S+ G+++GQG EN+K +L +N  I + I+  +R + G+   DS +Q   +  K++AD
Sbjct: 181 SYNGEKIGQGSENAKKYLADNPAIFDEIDHKVRVHFGMTEDDSPVQSELVEEKNEAD 237


>gi|168805218|gb|ACA28691.1| recombinase protein A [Mesorhizobium sp. CCBAU 11196]
 gi|168805220|gb|ACA28692.1| recombinase protein A [Mesorhizobium sp. CCBAU 11206]
 gi|168805224|gb|ACA28694.1| recombinase protein A [Mesorhizobium sp. CCBAU 11217]
 gi|168805226|gb|ACA28695.1| recombinase protein A [Mesorhizobium sp. CCBAU 11226]
 gi|168805234|gb|ACA28699.1| recombinase protein A [Mesorhizobium septentrionale]
 gi|168805236|gb|ACA28700.1| recombinase protein A [Mesorhizobium sp. CCBAU 11257]
          Length = 162

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 125/160 (78%), Positives = 146/160 (91%), Gaps = 1/160 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 4   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 63  VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+
Sbjct: 123 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGD 162


>gi|312284992|gb|ADQ64248.1| recombinase A [Bradyrhizobium sp. ISLU9]
          Length = 165

 Score =  260 bits (665), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 125/165 (75%), Positives = 148/165 (89%), Gaps = 1/165 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+
Sbjct: 2   KGSVMKLGKSDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTV 60

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD+
Sbjct: 61  AEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDV 120

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           +V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 121 LVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 165


>gi|189016812|gb|ACD70373.1| recombinase protein A [Rhizobium alkalisoli]
          Length = 159

 Score =  260 bits (665), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 130/156 (83%), Positives = 143/156 (91%), Gaps = 1/156 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  +I E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 5   VDKSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRI 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 64  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG
Sbjct: 124 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEG 159


>gi|309808699|ref|ZP_07702589.1| RecA protein [Lactobacillus iners LactinV 01V1-a]
 gi|308168060|gb|EFO70188.1| RecA protein [Lactobacillus iners LactinV 01V1-a]
          Length = 247

 Score =  260 bits (665), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 131/231 (56%), Positives = 177/231 (76%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           +D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+
Sbjct: 1   MDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDILVVDSVAALVPRAEIEGE 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG++  G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG ALKFY
Sbjct: 61  MGDAHVGLQARLMSQALRKLSGNISKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFY 120

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
           S++RL++R+   IK      G++ ++KVVKNK+A PFK    DIMYG GIS  GEL+D+ 
Sbjct: 121 STIRLEVRKSEQIKQGSDPIGSRVKIKVVKNKVAPPFKVATVDIMYGIGISKSGELLDMA 180

Query: 287 VKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           V   IV+KSGAW+S+   R+GQGREN+K +L E+ +I   I   +RQ  G+
Sbjct: 181 VDKDIVNKSGAWYSYGDDRIGQGRENAKQYLEEHPDIFREINDKVRQAYGI 231


>gi|168805222|gb|ACA28693.1| recombinase protein A [Mesorhizobium sp. CCBAU 11214]
 gi|168805228|gb|ACA28696.1| recombinase protein A [Mesorhizobium sp. CCBAU 11231]
 gi|168805238|gb|ACA28701.1| recombinase protein A [Mesorhizobium huakuii]
 gi|168805240|gb|ACA28702.1| recombinase protein A [Mesorhizobium sp. CCBAU 11185]
          Length = 162

 Score =  260 bits (665), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 124/160 (77%), Positives = 146/160 (91%), Gaps = 1/160 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 4   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 63  IEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+
Sbjct: 123 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGD 162


>gi|301601077|dbj|BAJ13227.1| RecA [Agrobacterium vitis]
          Length = 160

 Score =  260 bits (665), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 127/156 (81%), Positives = 142/156 (91%), Gaps = 1/156 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG+   I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++
Sbjct: 1   IMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEA 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VI
Sbjct: 60  QKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVI 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DSVAALTP+AEIEG+MG+SLPGMQARLMSQALRK T
Sbjct: 120 DSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKQT 155


>gi|37956350|gb|AAP15353.1| RecA [Desulfuromusa succinoxidans]
          Length = 173

 Score =  260 bits (664), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 124/172 (72%), Positives = 148/172 (86%)

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GG  AF+DAEHALD  YA+ LGV   +LL+SQPDTGEQALEIT+MLVRSGA+D+
Sbjct: 1   AEVQKQGGVAAFMDAEHALDIQYAQHLGVKADDLLVSQPDTGEQALEITEMLVRSGAIDL 60

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +V+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRKLT  +S+S C ++FINQ+RMKIG
Sbjct: 61  LVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKLTGIVSKSNCTIIFINQIRMKIG 120

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           VMFG+PETTTGGNALKFY SVRLDIRR+ S+K    + G +TRVKVVKNK+A
Sbjct: 121 VMFGNPETTTGGNALKFYCSVRLDIRRIASLKQGQDVVGGRTRVKVVKNKVA 172


>gi|62637691|gb|AAX92550.1| recombination protein A [Rhizobium gallicum bv. gallicum]
 gi|62637693|gb|AAX92551.1| recombination protein A [Rhizobium gallicum bv. gallicum]
 gi|62637695|gb|AAX92552.1| recombination protein A [Rhizobium gallicum bv. gallicum]
 gi|62637697|gb|AAX92553.1| recombination protein A [Rhizobium gallicum bv. gallicum]
 gi|62637699|gb|AAX92554.1| recombination protein A [Rhizobium gallicum bv. gallicum]
 gi|62637701|gb|AAX92555.1| recombination protein A [Rhizobium gallicum bv. gallicum]
          Length = 148

 Score =  260 bits (664), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 124/146 (84%), Positives = 139/146 (95%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL
Sbjct: 1   ISTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+M
Sbjct: 61  DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRS 193
           G+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 121 GDSLPGLQARLMSQALRKLTASISKS 146


>gi|29651997|gb|AAO87661.1| RecA [Listeria monocytogenes]
          Length = 185

 Score =  260 bits (664), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 124/187 (66%), Positives = 156/187 (83%), Gaps = 2/187 (1%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKT
Sbjct: 1   QIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKT 58

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LV
Sbjct: 59  TVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALV 118

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FIN
Sbjct: 119 RSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFIN 178

Query: 202 QMRMKIG 208
           Q+R K+G
Sbjct: 179 QIREKVG 185


>gi|148645058|gb|ABR01055.1| RecA [uncultured Geobacter sp.]
          Length = 172

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 123/172 (71%), Positives = 149/172 (86%)

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALH IA++QKTGG  AFVDAEHALD  YARKLGV   +LL+SQPDTGEQALEI 
Sbjct: 1   SGKTTLALHIIAEAQKTGGIAAFVDAEHALDIGYARKLGVKTDDLLVSQPDTGEQALEIA 60

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           + LVRSGA+D++VIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT+ IS+S C +
Sbjct: 61  ETLVRSGAIDVLVIDSVAALVPKAEIEGDMGDSHMGLQARLMSQALRKLTAIISKSNCCV 120

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            FINQ+RMK+GVMFG+PETTTGGNALKFY+S+R+DIR++ S+K    + G++
Sbjct: 121 FFINQIRMKLGVMFGNPETTTGGNALKFYASIRMDIRKIASLKQGTDVIGSR 172


>gi|325515709|gb|ADZ24468.1| recombination protein A [Bradyrhizobium japonicum]
          Length = 154

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 119/154 (77%), Positives = 143/154 (92%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +Y
Sbjct: 1   SLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           ARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++L
Sbjct: 61  ARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDAL 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           PG+QARLMSQALRKLT+SI++S  +++FINQ+RM
Sbjct: 121 PGLQARLMSQALRKLTASINKSNTMVIFINQIRM 154


>gi|301601085|dbj|BAJ13231.1| RecA [Agrobacterium vitis]
          Length = 160

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 127/156 (81%), Positives = 142/156 (91%), Gaps = 1/156 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG+   I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTT AL TIA++
Sbjct: 1   IMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTHALQTIAEA 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VI
Sbjct: 60  QKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVI 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DSVAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT
Sbjct: 120 DSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKLT 155


>gi|193090227|gb|ACF15285.1| recombination protein A [Bradyrhizobium sp. CCBAU 65831]
          Length = 166

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 125/167 (74%), Positives = 148/167 (88%), Gaps = 1/167 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A+
Sbjct: 1   SVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V
Sbjct: 60  AQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           +DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 VDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 166


>gi|325651027|emb|CBY89335.1| RecA protein [Bradyrhizobium japonicum]
          Length = 166

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 123/165 (74%), Positives = 148/165 (89%), Gaps = 1/165 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG      + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+
Sbjct: 1   KGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTV 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD+
Sbjct: 60  AEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           +V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 120 LVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 164


>gi|207080807|gb|ACI22747.1| RecA [Agrobacterium sp. J3-N16]
 gi|207080827|gb|ACI22757.1| RecA [Agrobacterium sp. J3-34]
          Length = 156

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 126/157 (80%), Positives = 143/157 (91%), Gaps = 1/157 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG+   I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TI
Sbjct: 1   KGSVMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 60  AEAQKKGGVCAFVDAEHALDPVYARKLGVDLQGLLISQPDTGEQALEITDTLVRSGAIDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           +VIDSVAALTP+AEIEG+MG+SLPGMQARLMSQALRK
Sbjct: 120 LVIDSVAALTPKAEIEGEMGDSLPGMQARLMSQALRK 156


>gi|309799371|ref|ZP_07693614.1| RecA protein [Streptococcus infantis SK1302]
 gi|308117038|gb|EFO54471.1| RecA protein [Streptococcus infantis SK1302]
          Length = 257

 Score =  259 bits (663), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 125/223 (56%), Positives = 171/223 (76%), Gaps = 4/223 (1%)

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           +L+SQPD+GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+GD+G+S  G+QAR+MSQ
Sbjct: 1   MLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQ 60

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK- 240
           A+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK 
Sbjct: 61  AMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIKG 120

Query: 241 ---DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
               KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GA
Sbjct: 121 TGDQKDTSVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISRTGELLKIASDLDIIKKAGA 180

Query: 298 WFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           W+S+K +++GQG EN+K +L ++ EI + I+  +R   GL+ D
Sbjct: 181 WYSYKDEKIGQGSENAKKYLADHPEIFDEIDHQVRVKFGLIED 223


>gi|37956346|gb|AAP15351.1| RecA [Desulfuromusa bakii]
          Length = 179

 Score =  259 bits (663), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 126/173 (72%), Positives = 147/173 (84%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GG  AF+DAEHALD  YA+ LGV   +LLISQPDTGEQALEIT+MLVRSGA+D
Sbjct: 4   IAEVQKQGGVAAFIDAEHALDIQYAQNLGVKADDLLISQPDTGEQALEITEMLVRSGAID 63

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++VIDSVAALTPRAEIEG+MG+S  G+QARLMSQALRKLT  +S+S C ++FINQ+RMKI
Sbjct: 64  LLVIDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKLTGIVSKSNCTIIFINQIRMKI 123

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           GVMFG+PETTTGGNALKFY SVRLDIRR+ S+K    + G  T VKVVKNK+A
Sbjct: 124 GVMFGNPETTTGGNALKFYCSVRLDIRRIASLKQGXDVVGGXTPVKVVKNKVA 176


>gi|289190678|gb|ADC93444.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-29]
 gi|289190698|gb|ADC93454.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-29]
 gi|289190700|gb|ADC93455.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-29]
          Length = 169

 Score =  259 bits (663), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 118/159 (74%), Positives = 145/159 (91%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALH +A+ Q+ GG CAF+DAE
Sbjct: 11  IETVSTGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHCVAEGQRKGGICAFIDAE 70

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGA+D++V+DSVAAL P+AE+E
Sbjct: 71  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALVPKAELE 130

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169


>gi|189016830|gb|ACD70382.1| recombinase protein A [Rhizobium sp. CCBAU 03301]
          Length = 159

 Score =  259 bits (663), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 128/157 (81%), Positives = 144/157 (91%), Gaps = 1/157 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 4   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 63  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+
Sbjct: 123 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGE 159


>gi|160947818|gb|ABX54718.1| RecA protein [Sinorhizobium meliloti]
          Length = 168

 Score =  259 bits (663), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 128/158 (81%), Positives = 145/158 (91%), Gaps = 1/158 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI
Sbjct: 8   VDKSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRI 66

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 67  IEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDT 126

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           GEQALEITD LVRSGA+DI+VIDSVAAL PRAEI+G+M
Sbjct: 127 GEQALEITDTLVRSGAIDILVIDSVAALVPRAEIDGEM 164


>gi|325305336|gb|ADZ06016.1| RecA [Aeromonas veronii bv. sobria]
          Length = 158

 Score =  259 bits (663), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 120/157 (76%), Positives = 142/157 (90%)

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSV
Sbjct: 2   GKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSV 61

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSP
Sbjct: 62  AALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSP 121

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+TR
Sbjct: 122 ETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNETR 158


>gi|213950720|gb|ACJ54605.1| recombination protein A [Bradyrhizobium yuanmingense]
          Length = 166

 Score =  259 bits (663), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 125/164 (76%), Positives = 147/164 (89%), Gaps = 1/164 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +G+G+IM+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALH
Sbjct: 2   FGQGSIMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALH 60

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 61  TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 120

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI
Sbjct: 121 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASI 164


>gi|312284986|gb|ADQ64245.1| recombinase A [Bradyrhizobium sp. LmjB4]
 gi|312284988|gb|ADQ64246.1| recombinase A [Bradyrhizobium sp. LmjB4a]
 gi|312284998|gb|ADQ64251.1| recombinase A [Bradyrhizobium sp. LmjB1]
          Length = 165

 Score =  259 bits (663), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 122/166 (73%), Positives = 148/166 (89%), Gaps = 1/166 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG++M+LG      + +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT
Sbjct: 1   GKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHT 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           +A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGA+D
Sbjct: 60  VAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAID 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 120 VLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 165


>gi|312284964|gb|ADQ64234.1| recombinase A [Bradyrhizobium sp. LmjA2]
 gi|312284968|gb|ADQ64236.1| recombinase A [Bradyrhizobium sp. LmjH2p]
 gi|312284982|gb|ADQ64243.1| recombinase A [Bradyrhizobium sp. LmjB2b]
 gi|312284984|gb|ADQ64244.1| recombinase A [Bradyrhizobium sp. LmjB3]
          Length = 165

 Score =  259 bits (663), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 122/166 (73%), Positives = 148/166 (89%), Gaps = 1/166 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG++M+LG      + +E +SSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT
Sbjct: 1   GKGSVMKLGKNDRSMD-VETISSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHT 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           +A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD
Sbjct: 60  VAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVD 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 120 VLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 165


>gi|29652037|gb|AAO87681.1| RecA [Listeria monocytogenes]
          Length = 184

 Score =  259 bits (662), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 124/186 (66%), Positives = 155/186 (83%), Gaps = 2/186 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVDI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDILVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MRMKIG 208
           +R K+G
Sbjct: 179 IREKVG 184


>gi|160947826|gb|ABX54722.1| RecA protein [Bradyrhizobium elkanii]
          Length = 172

 Score =  259 bits (662), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 123/168 (73%), Positives = 148/168 (88%), Gaps = 1/168 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+  +GKG++M+LG      + +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTT
Sbjct: 1   IELSFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVR
Sbjct: 60  LALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           SGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI
Sbjct: 120 SGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASI 167


>gi|110433573|gb|ABG74458.1| RecA [Rickettsia helvetica]
          Length = 160

 Score =  259 bits (662), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 120/159 (75%), Positives = 142/159 (89%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA+KLGV++  L+I
Sbjct: 2   PKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELII 61

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++    QARLMSQALR
Sbjct: 62  SQPDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALR 121

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           KLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 122 KLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNAL 160


>gi|301318400|gb|ADK67115.1| RecA protein [Stenotrophomonas humi]
          Length = 182

 Score =  259 bits (662), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 136/182 (74%), Positives = 157/182 (86%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +EV+ +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EPVEVIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKLGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+V+DSVAALTP+AE
Sbjct: 61  AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDIVVVDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS  ++VFINQ+R KIGVM    SPE TTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRHKIGVMMPGQSPEVTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|312284962|gb|ADQ64233.1| recombinase A [Bradyrhizobium sp. ISLU16]
 gi|312284974|gb|ADQ64239.1| recombinase A [Bradyrhizobium sp. ISLU13]
          Length = 165

 Score =  259 bits (662), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 124/165 (75%), Positives = 147/165 (89%), Gaps = 1/165 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG      + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+
Sbjct: 2   KGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTV 60

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD+
Sbjct: 61  AEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDV 120

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           +VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 121 LVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 165


>gi|38602327|emb|CAD58019.1| recombinase A [Gluconacetobacter xylinus]
          Length = 152

 Score =  259 bits (662), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 123/152 (80%), Positives = 140/152 (92%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGAVD++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT S+SRS  +L+F+
Sbjct: 1   VRSGAVDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGSVSRSNTMLIFL 60

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+R+KIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDKD +TGNQTRVKVVKNKMA
Sbjct: 61  NQIRLKIGVMFGSPETTTGGNALKFYASVRMDIRRIGSIKDKDKVTGNQTRVKVVKNKMA 120

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
            PF+QVEFDIMYGEGIS  GELIDLGVKA IV
Sbjct: 121 PPFRQVEFDIMYGEGISKVGELIDLGVKAGIV 152


>gi|255989407|gb|ACU51568.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
          Length = 149

 Score =  259 bits (662), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 122/149 (81%), Positives = 140/149 (93%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +
Sbjct: 1   GSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPV 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+S
Sbjct: 61  YARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDS 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVF 199
           LPG+QARLMSQALRKLT+SIS+S  +++ 
Sbjct: 121 LPGLQARLMSQALRKLTASISKSNTMVIV 149


>gi|325512811|gb|ADZ23594.1| RecA [Bradyrhizobium elkanii]
          Length = 154

 Score =  259 bits (662), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 118/154 (76%), Positives = 142/154 (92%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           GLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YAR
Sbjct: 1   GLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYAR 60

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
           KLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG
Sbjct: 61  KLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPG 120

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 LQARLMSQALRKLTASINKSHTMVIFINQIRMKI 154


>gi|29652288|gb|AAO87805.1| RecA [Listeria monocytogenes]
          Length = 187

 Score =  259 bits (662), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 124/189 (65%), Positives = 157/189 (83%), Gaps = 2/189 (1%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           ++ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGP
Sbjct: 1   IDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK 
Sbjct: 119 IAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKT 178

Query: 196 ILVFINQMR 204
           I +FINQ+R
Sbjct: 179 IAIFINQIR 187


>gi|29652180|gb|AAO87751.1| RecA [Listeria monocytogenes]
          Length = 186

 Score =  259 bits (662), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 124/186 (66%), Positives = 155/186 (83%), Gaps = 2/186 (1%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESS
Sbjct: 3   ALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESS 60

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI +
Sbjct: 61  GKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAE 120

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +
Sbjct: 121 ALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAI 180

Query: 199 FINQMR 204
           FINQ+R
Sbjct: 181 FINQIR 186


>gi|33087835|gb|AAP93048.1| recombination protein A [Yersinia intermedia]
          Length = 187

 Score =  259 bits (661), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 125/189 (66%), Positives = 155/189 (82%), Gaps = 2/189 (1%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           L QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSG
Sbjct: 1   LGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 58

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D 
Sbjct: 59  KTTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDA 118

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+F
Sbjct: 119 LTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIF 178

Query: 200 INQMRMKIG 208
           INQ+RMKIG
Sbjct: 179 INQIRMKIG 187


>gi|289190664|gb|ADC93437.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-12]
 gi|289190674|gb|ADC93442.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-12]
          Length = 162

 Score =  259 bits (661), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 123/152 (80%), Positives = 141/152 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 11  IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 70

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++ +LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E
Sbjct: 71  HALDPVYARKLGVNIDDLLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELE 130

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           G+MGESLPG+QARLMSQALRKLT+SI++S  +
Sbjct: 131 GEMGESLPGLQARLMSQALRKLTASINKSNTM 162


>gi|110433545|gb|ABG74444.1| RecA [Rickettsia australis]
          Length = 160

 Score =  259 bits (661), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 120/159 (75%), Positives = 142/159 (89%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EI+GPESSGKTTL LH IA++QK GG CAF+DAEHALD  YA+KLGV++  L+I
Sbjct: 2   PKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGICAFIDAEHALDPAYAKKLGVNIDELII 61

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEITD L+RSG +D+I+IDSVAAL P++EIEG+MG++    QARLMSQALR
Sbjct: 62  SQPDTGEQALEITDTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALR 121

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           KLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 122 KLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNAL 160


>gi|38602305|emb|CAD58008.1| recombinase A [Gluconacetobacter europaeus]
 gi|38602307|emb|CAD58009.1| recombinase A [Gluconacetobacter intermedius]
 gi|38602313|emb|CAD58012.1| recombinase A [Gluconacetobacter swingsii]
 gi|38602319|emb|CAD58015.1| recombinase A [Gluconacetobacter xylinus]
 gi|38602321|emb|CAD58016.1| recombinase A [Gluconacetobacter xylinus]
          Length = 152

 Score =  259 bits (661), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 123/152 (80%), Positives = 140/152 (92%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGAVD++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT S+SRS  +L+F+
Sbjct: 1   VRSGAVDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGSVSRSNTMLIFL 60

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+R+KIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDKD +TGNQTRVKVVKNKMA
Sbjct: 61  NQIRLKIGVMFGSPETTTGGNALKFYASVRMDIRRIGSIKDKDEVTGNQTRVKVVKNKMA 120

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
            PF+QVEFDIMYGEGIS  GELIDLGVKA IV
Sbjct: 121 PPFRQVEFDIMYGEGISKVGELIDLGVKAGIV 152


>gi|189016826|gb|ACD70380.1| recombinase protein A [Rhizobium sp. CCBAU 03294]
          Length = 158

 Score =  258 bits (660), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 127/156 (81%), Positives = 143/156 (91%), Gaps = 1/156 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSL LDIALGIGG PKGRI
Sbjct: 4   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLSLDIALGIGGLPKGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 63  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG
Sbjct: 123 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEG 158


>gi|255989345|gb|ACU51537.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
          Length = 149

 Score =  258 bits (660), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 122/149 (81%), Positives = 140/149 (93%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGL IALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +
Sbjct: 1   GSLGLYIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPV 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+S
Sbjct: 61  YARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDS 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVF 199
           LPG+QARLMSQALRKLT+SIS+S  +++F
Sbjct: 121 LPGLQARLMSQALRKLTASISKSNTMVIF 149


>gi|29652045|gb|AAO87685.1| RecA [Listeria monocytogenes]
          Length = 185

 Score =  258 bits (660), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 123/186 (66%), Positives = 155/186 (83%), Gaps = 2/186 (1%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKT
Sbjct: 2   QIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LV
Sbjct: 60  TVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FIN
Sbjct: 120 RSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFIN 179

Query: 202 QMRMKI 207
           Q+R K+
Sbjct: 180 QIREKV 185


>gi|38602323|emb|CAD58017.1| recombinase A [Gluconacetobacter xylinus]
          Length = 152

 Score =  258 bits (660), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 122/152 (80%), Positives = 140/152 (92%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGA+D++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT S+SRS  +L+F+
Sbjct: 1   VRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGSVSRSNTMLIFL 60

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+R+KIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDKD +TGNQTRVKVVKNKMA
Sbjct: 61  NQIRLKIGVMFGSPETTTGGNALKFYASVRMDIRRIGSIKDKDEVTGNQTRVKVVKNKMA 120

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
            PF+QVEFDIMYGEGIS  GELIDLGVKA IV
Sbjct: 121 PPFRQVEFDIMYGEGISKVGELIDLGVKAGIV 152


>gi|312284980|gb|ADQ64242.1| recombinase A [Bradyrhizobium elkanii]
          Length = 165

 Score =  258 bits (660), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 122/165 (73%), Positives = 147/165 (89%), Gaps = 1/165 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG      + +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+
Sbjct: 2   KGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTV 60

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD+
Sbjct: 61  AEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDV 120

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           +V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 121 LVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 165


>gi|33087885|gb|AAP93073.1| recombination protein A [Yersinia ruckeri]
          Length = 187

 Score =  258 bits (660), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 125/188 (66%), Positives = 154/188 (81%), Gaps = 2/188 (1%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AAL QI++ +GKGAIM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPES
Sbjct: 2   AALGQIEKQFGKGAIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 59

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI 
Sbjct: 60  SGKTTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEIC 119

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L
Sbjct: 120 DALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLL 179

Query: 198 VFINQMRM 205
           +FINQ+RM
Sbjct: 180 IFINQIRM 187


>gi|29652066|gb|AAO87695.1| RecA [Listeria monocytogenes]
          Length = 184

 Score =  258 bits (659), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 123/186 (66%), Positives = 155/186 (83%), Gaps = 2/186 (1%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKT
Sbjct: 1   QIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKT 58

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LV
Sbjct: 59  TVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALV 118

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FIN
Sbjct: 119 RSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFIN 178

Query: 202 QMRMKI 207
           Q+R K+
Sbjct: 179 QIREKV 184


>gi|325651033|emb|CBY89338.1| RecA protein [Bradyrhizobium japonicum]
          Length = 166

 Score =  258 bits (659), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 122/165 (73%), Positives = 148/165 (89%), Gaps = 1/165 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           +G++M+LG      + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+
Sbjct: 1   EGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTV 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD+
Sbjct: 60  AEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           +V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 120 LVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 164


>gi|255989339|gb|ACU51534.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989341|gb|ACU51535.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
          Length = 149

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 122/149 (81%), Positives = 140/149 (93%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GS GLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +
Sbjct: 1   GSGGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPV 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+S
Sbjct: 61  YARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDS 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVF 199
           LPG+QARLMSQALRKLT+SIS+S  +++F
Sbjct: 121 LPGLQARLMSQALRKLTASISKSNTMVIF 149


>gi|193090225|gb|ACF15284.1| recombination protein A [Bradyrhizobium sp. CCBAU 65788]
          Length = 166

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 125/167 (74%), Positives = 147/167 (88%), Gaps = 1/167 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A+
Sbjct: 1   SVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V
Sbjct: 60  AQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           IDSVAAL P+AE+EG+MGESLPG+QARLM QALRKLT+SI++S  ++
Sbjct: 120 IDSVAALVPKAELEGEMGESLPGLQARLMGQALRKLTASINKSNTMV 166


>gi|29652084|gb|AAO87704.1| RecA [Listeria monocytogenes]
 gi|29652244|gb|AAO87783.1| RecA [Listeria monocytogenes]
 gi|29652264|gb|AAO87793.1| RecA [Listeria monocytogenes]
          Length = 184

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 123/186 (66%), Positives = 155/186 (83%), Gaps = 2/186 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MRMKIG 208
           +R K+G
Sbjct: 179 IREKVG 184


>gi|325651023|emb|CBY89333.1| RecA protein [Bradyrhizobium japonicum]
 gi|325651029|emb|CBY89336.1| RecA protein [Bradyrhizobium japonicum]
 gi|325651031|emb|CBY89337.1| RecA protein [Bradyrhizobium japonicum]
 gi|325651035|emb|CBY89339.1| RecA protein [Bradyrhizobium japonicum]
          Length = 165

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 122/164 (74%), Positives = 147/164 (89%), Gaps = 1/164 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G++M+LG      + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A
Sbjct: 1   GSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           ++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++
Sbjct: 60  EAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVL 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 120 VVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 163


>gi|160947852|gb|ABX54735.1| RecA protein [Phyllobacterium sp. CCBAU 73021]
          Length = 163

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 125/157 (79%), Positives = 143/157 (91%), Gaps = 1/157 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG PKGRI
Sbjct: 8   VDKTKALDAALSQIERAFGKGSIMRLGRNEQVVE-IETVSTGSLSLDIALGVGGLPKGRI 66

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 67  VEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 126

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+
Sbjct: 127 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGE 163


>gi|110433549|gb|ABG74446.1| RecA [Rickettsia felis]
          Length = 160

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 119/159 (74%), Positives = 142/159 (89%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA+KLGV++  L+I
Sbjct: 2   PKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELII 61

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++    QARLMSQALR
Sbjct: 62  SQPDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALR 121

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           KLT+SI+R+ CI VFINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 122 KLTASINRTNCITVFINQIRMKIGVMFGNPETTTGGNAL 160


>gi|289190688|gb|ADC93449.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-3]
 gi|289190690|gb|ADC93450.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-3]
          Length = 162

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 122/152 (80%), Positives = 140/152 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 11  IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 70

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 71  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVVDSVAALVPKAELE 130

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           G+MGESLPG+QARLMSQALRKLT+SI++S  +
Sbjct: 131 GEMGESLPGLQARLMSQALRKLTASINKSNTM 162


>gi|213950730|gb|ACJ54610.1| recombination protein A [Bradyrhizobium yuanmingense]
          Length = 174

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 125/163 (76%), Positives = 146/163 (89%), Gaps = 1/163 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+
Sbjct: 3   KGSIMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTV 61

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD+
Sbjct: 62  AEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDV 121

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           +V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI+
Sbjct: 122 LVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASIN 164


>gi|114150704|gb|ABI51998.1| recombinase A [Stenotrophomonas maltophilia]
          Length = 172

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 127/172 (73%), Positives = 149/172 (86%), Gaps = 2/172 (1%)

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           LGV++ +LL+SQPDTGEQALEI DMLVRS +VDI+VIDSVAALTP+AEIEG+MG+ LPG+
Sbjct: 1   LGVNVDDLLLSQPDTGEQALEIADMLVRSSSVDIVVIDSVAALTPKAEIEGEMGDQLPGL 60

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLD 232
           QARLMSQALRKLT +I RS  ++VFINQ+R KIGVM    SPE TTGGNALKFY+SVRLD
Sbjct: 61  QARLMSQALRKLTGNIKRSNTLVVFINQLRHKIGVMMPGQSPEVTTGGNALKFYASVRLD 120

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           IRR+G+IK  D I GNQT++KVVKNK+A PFKQV  +I+YGEGIS  GELID
Sbjct: 121 IRRIGAIKKGDEIIGNQTKIKVVKNKLAPPFKQVITEILYGEGISREGELID 172


>gi|29652310|gb|AAO87816.1| RecA [Listeria monocytogenes]
          Length = 179

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 120/172 (69%), Positives = 148/172 (86%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA+ Q  GGT AF+D
Sbjct: 8   QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEVQAQGGTAAFID 67

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRSGAVD++VIDSVAAL PRAE
Sbjct: 68  AEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLVIDSVAALVPRAE 127

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           IEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+R K+GVMFG+P
Sbjct: 128 IEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVGVMFGNP 179


>gi|324962814|gb|ADY62488.1| recombinase protein A [Mesorhizobium sp. CCNWSX622]
 gi|324962824|gb|ADY62493.1| recombinase protein A [Mesorhizobium alhagi]
          Length = 154

 Score =  258 bits (658), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 123/155 (79%), Positives = 142/155 (91%), Gaps = 1/155 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG+   I E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALH
Sbjct: 1   FGKGSIMRLGANEKIVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQ
Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQ 154


>gi|312285000|gb|ADQ64252.1| recombinase A [Bradyrhizobium sp. ISLU15]
          Length = 165

 Score =  258 bits (658), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 123/165 (74%), Positives = 147/165 (89%), Gaps = 1/165 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG      + +E +SSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+
Sbjct: 2   KGSVMKLGKNDRSMD-VESISSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTV 60

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD+
Sbjct: 61  AEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDV 120

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           +VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 121 LVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 165


>gi|223950659|emb|CAX46387.1| recombination protein A [Shinella granuli]
          Length = 146

 Score =  258 bits (658), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 124/147 (84%), Positives = 138/147 (93%), Gaps = 1/147 (0%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
           GS+ E IE VS+GSL LD+ALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QKTGG C
Sbjct: 1   GSVVE-IETVSTGSLSLDVALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKTGGIC 59

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALT
Sbjct: 60  AFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALT 119

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRK 185
           PRAEIEG+MGESLPG+QARLMSQALRK
Sbjct: 120 PRAEIEGEMGESLPGLQARLMSQALRK 146


>gi|312284990|gb|ADQ64247.1| recombinase A [Bradyrhizobium sp. LmjD32]
 gi|312284996|gb|ADQ64250.1| recombinase A [Bradyrhizobium sp. LmjD2b]
          Length = 165

 Score =  258 bits (658), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 121/165 (73%), Positives = 147/165 (89%), Gaps = 1/165 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG      + +E +SSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+
Sbjct: 2   KGSVMKLGKNDRSMD-VETISSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTV 60

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD+
Sbjct: 61  AEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDV 120

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           +V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 121 LVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 165


>gi|312284966|gb|ADQ64235.1| recombinase A [Bradyrhizobium sp. LmjC]
          Length = 165

 Score =  258 bits (658), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 121/165 (73%), Positives = 147/165 (89%), Gaps = 1/165 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG      + +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+
Sbjct: 2   KGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTV 60

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGA+D+
Sbjct: 61  AEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAIDV 120

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           +V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 121 LVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 165


>gi|239937318|dbj|BAH79117.1| recombinase A [Aeromonas sp. A10]
 gi|239937320|dbj|BAH79118.1| recombinase A [Aeromonas sp. 67P-24]
 gi|239937322|dbj|BAH79119.1| recombinase A [Aeromonas sp. Y62]
 gi|239937324|dbj|BAH79120.1| recombinase A [Aeromonas sp. AC9804]
 gi|239937326|dbj|BAH79121.1| recombinase A [Aeromonas sp. AC0202]
 gi|239937328|dbj|BAH79122.1| recombinase A [Aeromonas sp. GF1]
 gi|239937330|dbj|BAH79123.1| recombinase A [Aeromonas sp. GMA0361]
 gi|239937332|dbj|BAH79124.1| recombinase A [Aeromonas hydrophila]
 gi|239937334|dbj|BAH79125.1| recombinase A [Aeromonas hydrophila]
 gi|259479085|dbj|BAI40090.1| recombinase A [Aeromonas sp. GV16]
 gi|259479087|dbj|BAI40091.1| recombinase A [Aeromonas sp. GV20]
 gi|259479091|dbj|BAI40093.1| recombinase A [Aeromonas sp. Rameshwaram]
 gi|259479095|dbj|BAI40095.1| recombinase A [Aeromonas sp. TT2]
 gi|259479097|dbj|BAI40096.1| recombinase A [Aeromonas sp. TT5]
          Length = 157

 Score =  258 bits (658), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 120/157 (76%), Positives = 141/157 (89%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA++QK G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLV
Sbjct: 1   TLTLQVIAEAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RS AVD+I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FIN
Sbjct: 61  RSNAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFIN 120

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           Q+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+
Sbjct: 121 QIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGA 157


>gi|37956368|gb|AAP15359.1| RecA [Pelobacter venetianus]
          Length = 178

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 120/168 (71%), Positives = 148/168 (88%)

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG  AFVDAEHALD  YARKLGV   +LL+SQPDTGEQALEIT++LVRSGA+D++V+D
Sbjct: 3   KKGGIAAFVDAEHALDIHYARKLGVRTDDLLVSQPDTGEQALEITEVLVRSGAIDVLVVD 62

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL PRAEIEG+MG++  G+QARLMSQALRKLT +IS+S C ++FINQ+RMKIGVMFG
Sbjct: 63  SVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTGTISKSNCCVIFINQIRMKIGVMFG 122

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           +PETT+GGNALKFY+SVR+DIR++ ++K    + GN+TRVKVVKNK+A
Sbjct: 123 NPETTSGGNALKFYASVRMDIRKIATLKQGQDVIGNRTRVKVVKNKVA 170


>gi|268308927|gb|ACY95424.1| recombination protein A [Rhizobium sp. CCBAU 83006]
          Length = 145

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 121/145 (83%), Positives = 137/145 (94%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NL
Sbjct: 1   GLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNL 60

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           LISQPDTGEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQA
Sbjct: 61  LISQPDTGEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQA 120

Query: 183 LRKLTSSISRSKCILVFINQMRMKI 207
           LRKLT+SIS+S  +++FINQ+RMKI
Sbjct: 121 LRKLTASISKSNTMVIFINQIRMKI 145


>gi|193090219|gb|ACF15281.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|193090221|gb|ACF15282.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|193090245|gb|ACF15294.1| recombination protein A [Bradyrhizobium yuanmingense]
          Length = 166

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 123/167 (73%), Positives = 148/167 (88%), Gaps = 1/167 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A+
Sbjct: 1   SVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V
Sbjct: 60  AQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           +DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 VDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 166


>gi|110433553|gb|ABG74448.1| RecA [Rickettsia canadensis]
          Length = 160

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 119/159 (74%), Positives = 142/159 (89%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA+KLGV++  L+I
Sbjct: 2   PKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELII 61

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++    QARLMSQALR
Sbjct: 62  SQPDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALR 121

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           KLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGG+AL
Sbjct: 122 KLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGHAL 160


>gi|110433543|gb|ABG74443.1| RecA [Rickettsia japonica]
 gi|110433547|gb|ABG74445.1| RecA [Rickettsia sp. A-167]
 gi|110433551|gb|ABG74447.1| RecA [Rickettsia rickettsii]
 gi|110433561|gb|ABG74452.1| RecA [Israeli tick typhus rickettsia]
 gi|110433563|gb|ABG74453.1| RecA [Israeli tick typhus rickettsia]
 gi|110433565|gb|ABG74454.1| RecA [Israeli tick typhus rickettsia]
 gi|110433567|gb|ABG74455.1| RecA [Rickettsia conorii]
 gi|110433569|gb|ABG74456.1| RecA [Israeli tick typhus rickettsia]
 gi|110433571|gb|ABG74457.1| RecA [Rickettsia conorii]
          Length = 160

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 119/159 (74%), Positives = 141/159 (88%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA+KLGV++  L+I
Sbjct: 2   PKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELII 61

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D L+RS  +D+I+IDSVAAL P++EIEG+MG++    QARLMSQALR
Sbjct: 62  SQPDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALR 121

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           KLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 122 KLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNAL 160


>gi|110433555|gb|ABG74449.1| RecA [Rickettsia africae]
 gi|110433559|gb|ABG74451.1| RecA [Rickettsia mongolotimonae]
          Length = 160

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 119/159 (74%), Positives = 141/159 (88%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA+KLGV++  L+I
Sbjct: 2   PKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELII 61

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D L+RS  +D+I+IDSVAAL P++EIEG+MG++    QARLMSQALR
Sbjct: 62  SQPDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALR 121

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           KLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 122 KLTASINRTNCIAVFINQIRMKIGVMFGSPETTTGGNAL 160


>gi|16565247|gb|AAL26155.1| recombinase A [Listonella anguillarum]
          Length = 181

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 123/182 (67%), Positives = 152/182 (83%), Gaps = 2/182 (1%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSGA+D
Sbjct: 59  IAAAQRVGKTCAFIDAEHALDPIYAKKLGVNIDKLLVSQPDTGEQALEICDALARSGAID 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAALTP AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VIVIDSVAALTPNAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178

Query: 208 GV 209
           GV
Sbjct: 179 GV 180


>gi|33087831|gb|AAP93046.1| recombination protein A [Yersinia intermedia]
          Length = 186

 Score =  257 bits (656), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 124/188 (65%), Positives = 154/188 (81%), Gaps = 2/188 (1%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           L QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSG
Sbjct: 1   LGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 58

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D 
Sbjct: 59  KTTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDA 118

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+F
Sbjct: 119 LTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIF 178

Query: 200 INQMRMKI 207
           INQ+RMKI
Sbjct: 179 INQIRMKI 186


>gi|90568908|gb|ABD94348.1| RecA [Thermoanaerobacter mathranii]
 gi|90568910|gb|ABD94349.1| RecA [Thermoanaerobacter thermocopriae]
          Length = 181

 Score =  257 bits (656), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 123/181 (67%), Positives = 150/181 (82%)

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDIIVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    
Sbjct: 1   EQALEIAEALVRSGAVDIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVT 60

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+SK I+VFINQ+R K+G+MFG+PETT GG ALKFY+++RLD+R+V  IK  + I GN+T
Sbjct: 61  SKSKTIVVFINQLREKVGIMFGNPETTPGGRALKFYATIRLDVRKVDPIKQGNEIVGNRT 120

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D+G    I++KSGAW+S+   RLGQGR
Sbjct: 121 RVKVVKNKVAPPFKQAEFDIMYGEGISREGSILDIGTSIDIIEKSGAWYSYGDIRLGQGR 180

Query: 311 E 311
           E
Sbjct: 181 E 181


>gi|117667642|gb|ABK55867.1| recombinase A [Nocardiopsis dassonvillei subsp. dassonvillei]
          Length = 168

 Score =  257 bits (656), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 120/168 (71%), Positives = 144/168 (85%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHALD  YA+K+
Sbjct: 1   DVALGIGGLPRGRVVEIYGPESSGKTTVALHAVASAQRMGGIAAFVDAEHALDPEYAKKI 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GV+  +LL+SQPDTGEQALEI DML+RSGAV IIVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVNTDDLLLSQPDTGEQALEIVDMLIRSGAVSIIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+  ++ ++    +FINQ+R K+GVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKIAGALHQTNTTAIFINQLREKVGVMFGSPETTTGGKAL 168


>gi|37727947|gb|AAR02357.1| RecA [Borrelia miyamotoi]
          Length = 191

 Score =  257 bits (656), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 121/189 (64%), Positives = 156/189 (82%), Gaps = 2/189 (1%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK+GG  AF+DAEHALD +YA+ LGV++  L +SQPDTGEQALEI + L+
Sbjct: 2   TLTLQAIAEVQKSGGIAAFIDAEHALDPVYAKALGVNIDELWLSQPDTGEQALEIAEYLI 61

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG VD+IVIDSVAALTP+AEI+G+MG+S  G+QARLMS+ALRK+T  +S+S   ++FIN
Sbjct: 62  RSGGVDLIVIDSVAALTPQAEIDGEMGDSQIGLQARLMSKALRKITGILSKSNTCIMFIN 121

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI--KDKDSITGNQTRVKVVKNKM 259
           Q+RMKIGVMFG+PETTTGGNALKFYSS+RL++R++  +     D + GN+ RVKVVKNK+
Sbjct: 122 QIRMKIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTGTSADDVIGNKIRVKVVKNKV 181

Query: 260 ASPFKQVEF 268
           A PF++VE 
Sbjct: 182 APPFRKVEL 190


>gi|29652270|gb|AAO87796.1| RecA [Listeria monocytogenes]
          Length = 186

 Score =  257 bits (656), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 123/188 (65%), Positives = 156/188 (82%), Gaps = 2/188 (1%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           ++ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGP
Sbjct: 1   IDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK 
Sbjct: 119 IAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKT 178

Query: 196 ILVFINQM 203
           I +FINQ+
Sbjct: 179 IAIFINQI 186


>gi|301318434|gb|ADK67132.1| RecA protein [Stenotrophomonas chelatiphaga]
          Length = 182

 Score =  257 bits (656), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 134/182 (73%), Positives = 156/182 (85%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +E++ +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EPVEIIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKKGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRS +VDI+V+DSVAALTP+AE
Sbjct: 61  AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSNSVDIVVVDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS  ++VFINQ+R KIGVM    SPE TTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRHKIGVMMPGQSPEVTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|62637721|gb|AAX92565.1| recombination protein A [Rhizobium etli bv. phaseoli]
          Length = 148

 Score =  257 bits (656), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 122/146 (83%), Positives = 138/146 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSLGLDIAL +GG PKGRI+E YGPESSGKTTLAL TIA++QK GG CAFVDAEHAL
Sbjct: 1   ISTGSLGLDIALRVGGLPKGRIIEFYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+M
Sbjct: 61  DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRS 193
           G+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 121 GDSLPGLQARLMSQALRKLTASISKS 146


>gi|57116488|gb|AAW33735.1| recombinase A [Serratia symbiotica str. Tucson]
          Length = 170

 Score =  256 bits (655), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 117/170 (68%), Positives = 146/170 (85%)

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI 
Sbjct: 1   SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEIC 60

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D L RSGA+D+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L
Sbjct: 61  DALTRSGAIDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLL 120

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D + G
Sbjct: 121 IFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDEVVG 170


>gi|213012336|gb|ACJ38734.1| recombination-repair protein [Photobacterium sp. R-34]
          Length = 169

 Score =  256 bits (655), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 120/169 (71%), Positives = 145/169 (85%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAF+DAEHALD    +KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLEAIACAQKAGKTCAFIDAEHALDPSTLKKLGVDIDQLLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D +
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEV 169


>gi|297523477|emb|CBH31146.1| recombination protein A [Mesorhizobium sp. LKU3]
          Length = 152

 Score =  256 bits (655), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 123/153 (80%), Positives = 140/153 (91%), Gaps = 1/153 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG+   I E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++Q
Sbjct: 1   MRLGANEKIVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGAVD++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           SVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 152


>gi|239937336|dbj|BAH79126.1| recombinase A [Aeromonas punctata]
 gi|259479089|dbj|BAI40092.1| recombinase A [Aeromonas sp. Kochi]
 gi|259479093|dbj|BAI40094.1| recombinase A [Aeromonas sp. TT1]
          Length = 157

 Score =  256 bits (655), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 120/157 (76%), Positives = 140/157 (89%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA++QK G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLV
Sbjct: 1   TLTLQVIAEAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RS AVD+I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FIN
Sbjct: 61  RSNAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFIN 120

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           Q+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+
Sbjct: 121 QIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGA 157


>gi|38602329|emb|CAD58020.1| recombinase A [Acetobacter aceti]
          Length = 152

 Score =  256 bits (655), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 121/152 (79%), Positives = 139/152 (91%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGAVD++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT ++SRS  +LVF+
Sbjct: 1   VRSGAVDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGTVSRSNTLLVFL 60

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+R+KIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIKDKD + GNQTRVKVVKNKMA
Sbjct: 61  NQIRLKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKDKDEVVGNQTRVKVVKNKMA 120

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
            PF+QVEFDIMYGEGIS  GELIDLGVKA +V
Sbjct: 121 PPFRQVEFDIMYGEGISKMGELIDLGVKAGVV 152


>gi|38602325|emb|CAD58018.1| recombinase A [Gluconacetobacter xylinus]
          Length = 152

 Score =  256 bits (655), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 121/152 (79%), Positives = 139/152 (91%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGA+D++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT S+SRS  +L+F+
Sbjct: 1   VRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGSVSRSNTMLIFL 60

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+R+KIGVMFGSPETTTGGNAL FY+SVR+DIRR+GSIKDKD +TGNQTRVKVVKNKMA
Sbjct: 61  NQIRLKIGVMFGSPETTTGGNALNFYASVRMDIRRIGSIKDKDKVTGNQTRVKVVKNKMA 120

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
            PF+QVEFDIMYGEGIS  GELIDLGVKA IV
Sbjct: 121 PPFRQVEFDIMYGEGISKVGELIDLGVKAGIV 152


>gi|324962822|gb|ADY62492.1| recombinase protein A [Mesorhizobium amorphae]
          Length = 158

 Score =  256 bits (655), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 121/155 (78%), Positives = 142/155 (91%), Gaps = 1/155 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALH
Sbjct: 5   FGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALH 63

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+
Sbjct: 64  TVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAI 123

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQ
Sbjct: 124 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQ 158


>gi|110433539|gb|ABG74441.1| RecA [Rickettsia rhipicephali]
          Length = 160

 Score =  256 bits (655), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 119/159 (74%), Positives = 141/159 (88%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EI+GPESSGKTTL LH IA++QK  GTCAF+DAEHALD  YA+KLGV++  L+I
Sbjct: 2   PKGRIIEIFGPESSGKTTLTLHLIAEAQKKDGTCAFIDAEHALDPAYAKKLGVNIDELII 61

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++    QARLMSQALR
Sbjct: 62  SQPDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALR 121

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           KLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 122 KLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNAL 160


>gi|189016840|gb|ACD70387.1| recombinase protein A [Bradyrhizobium sp. CCBAU 03282]
          Length = 159

 Score =  256 bits (655), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 123/157 (78%), Positives = 143/157 (91%), Gaps = 1/157 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 4   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 63  VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+
Sbjct: 123 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGE 159


>gi|225008766|gb|ACN78931.1| RecA [Rhizobium sp. MITP02]
          Length = 151

 Score =  256 bits (654), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 124/152 (81%), Positives = 141/152 (92%), Gaps = 1/152 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LGS  ++ E IE +S+GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLAL TIA++QK 
Sbjct: 1   LGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALQTIAEAQKK 59

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSV
Sbjct: 60  GGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSV 119

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           AALTPRAEIEG+MG++LPG+QARLMSQALRKL
Sbjct: 120 AALTPRAEIEGEMGDNLPGLQARLMSQALRKL 151


>gi|213950732|gb|ACJ54611.1| recombination protein A [Sinorhizobium sp. CCBAU 51063]
          Length = 153

 Score =  256 bits (654), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 125/152 (82%), Positives = 140/152 (92%), Gaps = 1/152 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TI
Sbjct: 3   KGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTI 61

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 62  AEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDV 121

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +V+DSVAAL PRAEIEG+MG+SLPGMQARLMS
Sbjct: 122 LVVDSVAALVPRAEIEGEMGDSLPGMQARLMS 153


>gi|29651981|gb|AAO87653.1| RecA [Listeria monocytogenes]
 gi|29652114|gb|AAO87718.1| RecA [Listeria monocytogenes]
 gi|29652176|gb|AAO87749.1| RecA [Listeria monocytogenes]
 gi|29652268|gb|AAO87795.1| RecA [Listeria monocytogenes]
 gi|29652296|gb|AAO87809.1| RecA [Listeria monocytogenes]
 gi|29652308|gb|AAO87815.1| RecA [Listeria monocytogenes]
          Length = 183

 Score =  256 bits (654), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 122/185 (65%), Positives = 154/185 (83%), Gaps = 2/185 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MRMKI 207
           +R K+
Sbjct: 179 IREKV 183


>gi|189016814|gb|ACD70374.1| recombinase protein A [Mesorhizobium sp. CCBAU 01405]
          Length = 160

 Score =  256 bits (654), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 123/157 (78%), Positives = 143/157 (91%), Gaps = 1/157 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 5   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 64  VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+
Sbjct: 124 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGE 160


>gi|160947846|gb|ABX54732.1| RecA protein [Rhizobium gallicum]
          Length = 163

 Score =  256 bits (654), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 126/157 (80%), Positives = 143/157 (91%), Gaps = 1/157 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSL LDIALGIGG PKGRI
Sbjct: 8   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLSLDIALGIGGLPKGRI 66

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 67  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 126

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEI G+
Sbjct: 127 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIVGE 163


>gi|38602345|emb|CAD58028.1| recombinase A [Acidomonas methanolica]
          Length = 152

 Score =  256 bits (654), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 119/152 (78%), Positives = 140/152 (92%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGA+D++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT ++SRS  +++F+
Sbjct: 1   VRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGTVSRSNTMVIFL 60

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIKD+D + GNQTRVKVVKNKMA
Sbjct: 61  NQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKDRDKVVGNQTRVKVVKNKMA 120

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
            PF+QVEFDIMYGEG+S  GELIDLGVKA+IV
Sbjct: 121 PPFRQVEFDIMYGEGVSKMGELIDLGVKANIV 152


>gi|126797712|gb|ABO27377.1| RecA protein [Sinorhizobium sp. BR816]
          Length = 150

 Score =  256 bits (654), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 124/151 (82%), Positives = 140/151 (92%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A++Q
Sbjct: 1   MKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAAL PRAEIEG+MG+SLPGMQARLMSQAL
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150


>gi|16565116|gb|AAL26091.1|AF311535_1 recombinase A [Vibrio vulnificus]
 gi|16565118|gb|AAL26092.1|AF311536_1 recombinase A [Vibrio vulnificus]
 gi|16565120|gb|AAL26093.1|AF311537_1 recombinase A [Vibrio vulnificus]
 gi|16565122|gb|AAL26094.1|AF311538_1 recombinase A [Vibrio vulnificus]
 gi|16565124|gb|AAL26095.1|AF311539_1 recombinase A [Vibrio vulnificus]
 gi|16565126|gb|AAL26096.1|AF311540_1 recombinase A [Vibrio vulnificus]
 gi|16565128|gb|AAL26097.1|AF311541_1 recombinase A [Vibrio vulnificus]
 gi|16565130|gb|AAL26098.1|AF311542_1 recombinase A [Vibrio vulnificus]
 gi|16565132|gb|AAL26099.1|AF311543_1 recombinase A [Vibrio vulnificus]
 gi|16565134|gb|AAL26100.1|AF311544_1 recombinase A [Vibrio vulnificus]
 gi|16565136|gb|AAL26101.1|AF311545_1 recombinase A [Vibrio vulnificus]
 gi|16565138|gb|AAL26102.1|AF311546_1 recombinase A [Vibrio vulnificus]
 gi|16565140|gb|AAL26103.1|AF311547_1 recombinase A [Vibrio vulnificus]
 gi|16565142|gb|AAL26104.1|AF311548_1 recombinase A [Vibrio vulnificus]
 gi|16565144|gb|AAL26105.1|AF311549_1 recombinase A [Vibrio vulnificus]
 gi|16565146|gb|AAL26106.1|AF311550_1 recombinase A [Vibrio vulnificus]
 gi|16565148|gb|AAL26107.1|AF311551_1 recombinase A [Vibrio vulnificus]
 gi|16565150|gb|AAL26108.1|AF311552_1 recombinase A [Vibrio vulnificus]
 gi|16565152|gb|AAL26109.1|AF311553_1 recombinase A [Vibrio vulnificus]
 gi|16565154|gb|AAL26110.1|AF311554_1 recombinase A [Vibrio vulnificus]
 gi|16565156|gb|AAL26111.1|AF311555_1 recombinase A [Vibrio vulnificus]
 gi|16565158|gb|AAL26112.1|AF311556_1 recombinase A [Vibrio vulnificus]
 gi|16565160|gb|AAL26113.1|AF311557_1 recombinase A [Vibrio vulnificus]
 gi|16565162|gb|AAL26114.1|AF311558_1 recombinase A [Vibrio vulnificus]
 gi|16565164|gb|AAL26115.1|AF311559_1 recombinase A [Vibrio vulnificus]
 gi|16565168|gb|AAL26117.1|AF311561_1 recombinase A [Vibrio vulnificus]
 gi|16565170|gb|AAL26118.1|AF311562_1 recombinase A [Vibrio vulnificus]
 gi|16565172|gb|AAL26119.1|AF311563_1 recombinase A [Vibrio vulnificus]
 gi|16565174|gb|AAL26120.1|AF311564_1 recombinase A [Vibrio vulnificus]
 gi|16565176|gb|AAL26121.1|AF311565_1 recombinase A [Vibrio vulnificus]
 gi|16565178|gb|AAL26122.1|AF311566_1 recombinase A [Vibrio vulnificus]
 gi|16565180|gb|AAL26123.1|AF311567_1 recombinase A [Vibrio vulnificus]
 gi|16565182|gb|AAL26124.1|AF311568_1 recombinase A [Vibrio vulnificus]
 gi|16565184|gb|AAL26125.1|AF311569_1 recombinase A [Vibrio vulnificus]
 gi|16565186|gb|AAL26126.1|AF311570_1 recombinase A [Vibrio vulnificus]
 gi|16565188|gb|AAL26127.1|AF311571_1 recombinase A [Vibrio vulnificus]
 gi|16565190|gb|AAL26128.1|AF311572_1 recombinase A [Vibrio vulnificus]
 gi|16565192|gb|AAL26129.1|AF311573_1 recombinase A [Vibrio vulnificus]
 gi|16565194|gb|AAL26130.1|AF311574_1 recombinase A [Vibrio vulnificus]
 gi|16565196|gb|AAL26131.1|AF311575_1 recombinase A [Vibrio vulnificus]
 gi|16565198|gb|AAL26132.1|AF311576_1 recombinase A [Vibrio vulnificus]
 gi|16565202|gb|AAL26134.1|AF311578_1 recombinase A [Vibrio vulnificus]
 gi|16565204|gb|AAL26135.1|AF311579_1 recombinase A [Vibrio vulnificus]
 gi|16565206|gb|AAL26136.1|AF311580_1 recombinase A [Vibrio vulnificus]
 gi|16565208|gb|AAL26137.1|AF311581_1 recombinase A [Vibrio vulnificus]
 gi|16565210|gb|AAL26138.1|AF311582_1 recombinase A [Vibrio vulnificus]
 gi|16565212|gb|AAL26139.1|AF311583_1 recombinase A [Vibrio vulnificus]
 gi|16565214|gb|AAL26140.1|AF311584_1 recombinase A [Vibrio vulnificus]
 gi|16565216|gb|AAL26141.1|AF311585_1 recombinase A [Vibrio vulnificus]
 gi|16565218|gb|AAL26142.1|AF311586_1 recombinase A [Vibrio vulnificus]
 gi|16565222|gb|AAL26144.1|AF311588_1 recombinase A [Vibrio vulnificus]
 gi|16565224|gb|AAL26145.1|AF311589_1 recombinase A [Vibrio vulnificus]
 gi|16565226|gb|AAL26146.1|AF311590_1 recombinase A [Vibrio vulnificus]
 gi|16565228|gb|AAL26147.1|AF311591_1 recombinase A [Vibrio vulnificus]
 gi|16565230|gb|AAL26148.1|AF311592_1 recombinase A [Vibrio vulnificus]
 gi|16565232|gb|AAL26149.1|AF311593_1 recombinase A [Vibrio vulnificus]
 gi|16565234|gb|AAL26150.1|AF311594_1 recombinase A [Vibrio vulnificus]
 gi|16565236|gb|AAL26151.1|AF311595_1 recombinase A [Vibrio vulnificus]
 gi|16565238|gb|AAL26152.1|AF311596_1 recombinase A [Vibrio vulnificus]
          Length = 181

 Score =  256 bits (654), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 122/182 (67%), Positives = 153/182 (84%), Gaps = 2/182 (1%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDQLLVSQPDTGEQALEICDALARSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178

Query: 208 GV 209
           GV
Sbjct: 179 GV 180


>gi|89515216|gb|ABD75437.1| RecA [Sinorhizobium americanum]
 gi|126797670|gb|ABO27356.1| RecA protein [Sinorhizobium americanum]
 gi|126797672|gb|ABO27357.1| RecA protein [Sinorhizobium americanum]
 gi|126797702|gb|ABO27372.1| RecA protein [Sinorhizobium saheli]
          Length = 150

 Score =  256 bits (654), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 124/151 (82%), Positives = 140/151 (92%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A++Q
Sbjct: 1   MKLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAAL PRAEIEG+MG+SLPGMQARLMSQAL
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150


>gi|189016818|gb|ACD70376.1| recombinase protein A [Mesorhizobium sp. CCBAU 01461]
          Length = 159

 Score =  256 bits (653), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 123/156 (78%), Positives = 142/156 (91%), Gaps = 1/156 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 5   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 64  VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG
Sbjct: 124 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEG 159


>gi|160375117|gb|ABX38943.1| recombinase protein A [Mesorhizobium caraganae]
          Length = 160

 Score =  256 bits (653), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 123/156 (78%), Positives = 142/156 (91%), Gaps = 1/156 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 6   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 64

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 65  VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 124

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG
Sbjct: 125 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEG 160


>gi|38602335|emb|CAD58023.1| recombinase A [Acetobacter lovaniensis]
          Length = 152

 Score =  256 bits (653), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 119/152 (78%), Positives = 140/152 (92%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGA+D++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT +++RS  +++F+
Sbjct: 1   VRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGTVARSNTLMIFL 60

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+R+KIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIKDKD +TGNQTRVKVVKNKMA
Sbjct: 61  NQIRLKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKDKDEVTGNQTRVKVVKNKMA 120

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
            PF+QVEFDIMYGEGIS  GELIDLGVKA +V
Sbjct: 121 PPFRQVEFDIMYGEGISKVGELIDLGVKAGVV 152


>gi|167508771|gb|ABZ81590.1| recombinase A [Bradyrhizobium sp. CCBAU 35139]
 gi|167508775|gb|ABZ81592.1| recombinase A [Bradyrhizobium sp. CCBAU 33143]
          Length = 162

 Score =  256 bits (653), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 124/161 (77%), Positives = 144/161 (89%), Gaps = 1/161 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++Q
Sbjct: 1   MKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VID
Sbjct: 60  KKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 120 SVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 160


>gi|110433541|gb|ABG74442.1| RecA [Rickettsia sp. BJ-90]
          Length = 160

 Score =  256 bits (653), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 118/159 (74%), Positives = 141/159 (88%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA++LGV++  L+I
Sbjct: 2   PKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKQLGVNIDELII 61

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D L+RS  +D+I+IDSVAAL P++EIEG+MG++    QARLMSQALR
Sbjct: 62  SQPDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALR 121

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           KLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 122 KLTASINRTNCIAVFINQIRMKIGVMFGSPETTTGGNAL 160


>gi|189016822|gb|ACD70378.1| recombinase protein A [Mesorhizobium sp. CCBAU 03254]
          Length = 158

 Score =  256 bits (653), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 123/156 (78%), Positives = 142/156 (91%), Gaps = 1/156 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 4   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 63  VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG
Sbjct: 123 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEG 158


>gi|189016816|gb|ACD70375.1| recombinase protein A [Mesorhizobium sp. CCBAU 01409]
          Length = 159

 Score =  256 bits (653), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 123/156 (78%), Positives = 142/156 (91%), Gaps = 1/156 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 5   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 64  VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG
Sbjct: 124 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEG 159


>gi|89515218|gb|ABD75438.1| RecA [Sinorhizobium xinjiangense]
 gi|126797674|gb|ABO27358.1| RecA protein [Sinorhizobium xinjiangense]
 gi|126797716|gb|ABO27379.1| RecA protein [Sinorhizobium sp. GRX8]
          Length = 150

 Score =  256 bits (653), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 126/151 (83%), Positives = 139/151 (92%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAAL PRAEIEG+MG+SLPGMQARLMSQAL
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150


>gi|289190620|gb|ADC93415.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-1]
 gi|289190642|gb|ADC93426.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-1]
 gi|289190666|gb|ADC93438.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-1]
 gi|289190694|gb|ADC93452.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-4]
 gi|289190702|gb|ADC93456.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-4]
          Length = 162

 Score =  256 bits (653), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 121/152 (79%), Positives = 140/152 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 11  IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 70

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E
Sbjct: 71  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELE 130

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           G+MG++LPG+QARLMSQALRKLT+SI++S  +
Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTM 162


>gi|189016820|gb|ACD70377.1| recombinase protein A [Mesorhizobium sp. CCBAU 01477]
          Length = 160

 Score =  256 bits (653), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 123/156 (78%), Positives = 142/156 (91%), Gaps = 1/156 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 6   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 64

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 65  VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 124

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG
Sbjct: 125 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEG 160


>gi|289190660|gb|ADC93435.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-7]
          Length = 162

 Score =  256 bits (653), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 121/152 (79%), Positives = 140/152 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 11  IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 70

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E
Sbjct: 71  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELE 130

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           G+MG++LPG+QARLMSQALRKLT+SI++S  +
Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTM 162


>gi|207080823|gb|ACI22755.1| RecA [Agrobacterium sp. J3-19]
          Length = 154

 Score =  256 bits (653), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 124/155 (80%), Positives = 141/155 (90%), Gaps = 1/155 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LG+   I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA+
Sbjct: 1   SVMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGEQALEITD LVRSGA+D++V
Sbjct: 60  AQKKGGVCAFVDAEHALDPVYARKLGVDLQGLLISQPDTGEQALEITDTLVRSGAIDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           IDSVAALTP+AEIEG+MG+SLPGMQARLMSQALRK
Sbjct: 120 IDSVAALTPKAEIEGEMGDSLPGMQARLMSQALRK 154


>gi|189016832|gb|ACD70383.1| recombinase protein A [Mesorhizobium sp. CCBAU 65318]
          Length = 159

 Score =  256 bits (653), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 122/157 (77%), Positives = 143/157 (91%), Gaps = 1/157 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 4   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 63  IEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+
Sbjct: 123 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGE 159


>gi|189016836|gb|ACD70385.1| recombinase protein A [Mesorhizobium sp. CCBAU 65328]
          Length = 157

 Score =  256 bits (653), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 123/156 (78%), Positives = 142/156 (91%), Gaps = 1/156 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 3   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG
Sbjct: 122 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEG 157


>gi|301318404|gb|ADK67117.1| RecA protein [Pseudoxanthomonas dokdonensis]
          Length = 182

 Score =  256 bits (653), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 133/182 (73%), Positives = 156/182 (85%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E IE++ +GSL LD ALGIGG P+GR+VEIYGPESSGKTTL L  IAQ QK GGT AF+D
Sbjct: 1   EPIEIIPTGSLMLDNALGIGGLPRGRVVEIYGPESSGKTTLTLQAIAQCQKQGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA +LGV++ +LL+SQPDTGEQALEI+DMLVRSG+VDI+V+DSVAALTP+AE
Sbjct: 61  AEHALDPIYAARLGVNVDDLLLSQPDTGEQALEISDMLVRSGSVDIVVVDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS   ++FINQ+RMKIG M    SPE TTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTTVIFINQLRMKIGAMMPGQSPEVTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|16565220|gb|AAL26143.1|AF311587_1 recombinase A [Vibrio vulnificus]
          Length = 181

 Score =  256 bits (653), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 122/182 (67%), Positives = 153/182 (84%), Gaps = 2/182 (1%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDQLLVSQPDTGEQALEICDALARSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAVRKLTGNLKQSNCMCIFINQIRMKI 178

Query: 208 GV 209
           GV
Sbjct: 179 GV 180


>gi|313493736|gb|ADR57221.1| recombinase A [Bradyrhizobium elkanii]
          Length = 161

 Score =  256 bits (653), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 121/162 (74%), Positives = 145/162 (89%), Gaps = 1/162 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           +M+LG      + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++
Sbjct: 1   VMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEA 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+
Sbjct: 60  QKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVV 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 120 DSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 161


>gi|16565250|gb|AAL26156.1| recombinase A [Vibrio diazotrophicus]
          Length = 181

 Score =  256 bits (653), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 122/182 (67%), Positives = 152/182 (83%), Gaps = 2/182 (1%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYARKLGV++  LL+SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPIYARKLGVNIDELLVSQPDTGEQALEICDALARSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ + INQ+RMKI
Sbjct: 119 VMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCICINQIRMKI 178

Query: 208 GV 209
           GV
Sbjct: 179 GV 180


>gi|167508753|gb|ABZ81581.1| recombinase A [Bradyrhizobium yuanmingense]
 gi|167508755|gb|ABZ81582.1| recombinase A [Bradyrhizobium sp. CCBAU 53152]
 gi|167508757|gb|ABZ81583.1| recombinase A [Bradyrhizobium sp. CCBAU 53229]
 gi|167508761|gb|ABZ81585.1| recombinase A [Bradyrhizobium yuanmingense]
 gi|167508763|gb|ABZ81586.1| recombinase A [Bradyrhizobium sp. CCBAU 65619]
 gi|167508765|gb|ABZ81587.1| recombinase A [Bradyrhizobium liaoningense]
 gi|167508773|gb|ABZ81591.1| recombinase A [Bradyrhizobium yuanmingense]
 gi|167508779|gb|ABZ81594.1| recombinase A [Bradyrhizobium sp. CCBAU 53135]
 gi|209571815|gb|ACI62760.1| recombinase A [Bradyrhizobium sp. SR83]
          Length = 162

 Score =  255 bits (652), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 123/161 (76%), Positives = 144/161 (89%), Gaps = 1/161 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++Q
Sbjct: 1   MKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+D
Sbjct: 60  KKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 120 SVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 160


>gi|289190638|gb|ADC93424.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-16]
 gi|289190668|gb|ADC93439.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-23]
 gi|289190712|gb|ADC93461.1| recombinase A protein [Bradyrhizobium yuanmingense]
          Length = 162

 Score =  255 bits (652), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 120/152 (78%), Positives = 140/152 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 11  IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 70

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 71  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 130

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           G+MG++LPG+QARLMSQALRKLT+SI++S  +
Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTM 162


>gi|68637444|emb|CAF21821.1| recombinase A [Pediococcus claussenii]
          Length = 177

 Score =  255 bits (652), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 119/176 (67%), Positives = 150/176 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  + SGSL LD ALG+GGFPKGRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   ISTIPSGSLALDEALGVGGFPKGRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D +YA+ LGV++  LL+SQPDTGE+ LEI D LV SGA+D++VIDSVAAL PRAEI+
Sbjct: 62  NAMDPVYAQNLGVNIDELLLSQPDTGEEGLEIADALVSSGAIDLVVIDSVAALVPRAEID 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
           G+MG++  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PE T GG
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGVMFGNPEATPGG 177


>gi|292398070|gb|ADE27983.1| recombinase A [Aeromonas salmonicida subsp. salmonicida]
          Length = 159

 Score =  255 bits (652), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 118/158 (74%), Positives = 141/158 (89%)

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA++QK G  CAF+DAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS A
Sbjct: 1   QVIAEAQKKGKVCAFIDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNA 60

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           VD+I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RM
Sbjct: 61  VDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRM 120

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           KIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IK+ D
Sbjct: 121 KIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKEGD 158


>gi|193090217|gb|ACF15280.1| recombination protein A [Bradyrhizobium elkanii]
          Length = 166

 Score =  255 bits (652), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 120/167 (71%), Positives = 147/167 (88%), Gaps = 1/167 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LG      + +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+
Sbjct: 1   SVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V
Sbjct: 60  GQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           +DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 VDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSHTMV 166


>gi|289190614|gb|ADC93412.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-6]
 gi|289190662|gb|ADC93436.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-6]
          Length = 162

 Score =  255 bits (652), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 120/152 (78%), Positives = 140/152 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 11  IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 70

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 71  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 130

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           G+MG++LPG+QARLMSQALRKLT+SI++S  +
Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTM 162


>gi|167508777|gb|ABZ81593.1| recombinase A [Bradyrhizobium sp. CCBAU 43277]
          Length = 162

 Score =  255 bits (652), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 120/149 (80%), Positives = 139/149 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 12  IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 71

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 72  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 131

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193
           G+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 132 GEMGDALPGLQARLMSQALRKLTASINKS 160


>gi|89515220|gb|ABD75439.1| RecA [Sinorhizobium kummerowiae]
 gi|126797694|gb|ABO27368.1| RecA protein [Sinorhizobium kummerowiae]
          Length = 150

 Score =  255 bits (651), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 126/151 (83%), Positives = 139/151 (92%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VID
Sbjct: 60  KKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAAL PRAEIEG+MG+SLPGMQARLMSQAL
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150


>gi|29652092|gb|AAO87708.1| RecA [Listeria monocytogenes]
          Length = 179

 Score =  255 bits (651), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 122/181 (67%), Positives = 151/181 (83%), Gaps = 2/181 (1%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH
Sbjct: 1   FGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALH 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRSGAV
Sbjct: 59  AIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAV 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           DI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+R K
Sbjct: 119 DILVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREK 178

Query: 207 I 207
           +
Sbjct: 179 V 179


>gi|90568912|gb|ABD94350.1| RecA [Thermoanaerobacter mathranii subsp. alimentarius]
 gi|90568914|gb|ABD94351.1| RecA [Thermoanaerobacter mathranii subsp. alimentarius]
          Length = 180

 Score =  255 bits (651), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 122/180 (67%), Positives = 149/180 (82%)

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDIIVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    
Sbjct: 1   EQALEIAEALVRSGAVDIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVT 60

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+SK I+VFINQ+R K+G+MFG+PETT GG ALKFY+++RLD+R+V  IK  + I GN+T
Sbjct: 61  SKSKTIVVFINQLREKVGIMFGNPETTPGGRALKFYATIRLDVRKVDPIKQGNEIVGNRT 120

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D+G    I++KSGAW+S+   RLGQGR
Sbjct: 121 RVKVVKNKVAPPFKQAEFDIMYGEGISREGSILDIGTSIDIIEKSGAWYSYGDIRLGQGR 180


>gi|213950724|gb|ACJ54607.1| recombination protein A [Bradyrhizobium japonicum]
          Length = 161

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 121/161 (75%), Positives = 144/161 (89%), Gaps = 1/161 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG      + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++Q
Sbjct: 1   MKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+D
Sbjct: 60  KKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 120 SVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 160


>gi|29651971|gb|AAO87648.1| RecA [Listeria monocytogenes]
 gi|29652029|gb|AAO87677.1| RecA [Listeria monocytogenes]
 gi|29652035|gb|AAO87680.1| RecA [Listeria monocytogenes]
 gi|29652178|gb|AAO87750.1| RecA [Listeria monocytogenes]
 gi|29652256|gb|AAO87789.1| RecA [Listeria monocytogenes]
 gi|29652280|gb|AAO87801.1| RecA [Listeria monocytogenes]
 gi|29652294|gb|AAO87808.1| RecA [Listeria monocytogenes]
          Length = 182

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 122/184 (66%), Positives = 153/184 (83%), Gaps = 2/184 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MRMK 206
           +R K
Sbjct: 179 IREK 182


>gi|89515226|gb|ABD75442.1| RecA [Sinorhizobium terangae]
 gi|89515228|gb|ABD75443.1| RecA [Sinorhizobium terangae]
 gi|89515230|gb|ABD75444.1| RecA [Sinorhizobium terangae]
 gi|89515232|gb|ABD75445.1| RecA [Ensifer mexicanus]
 gi|89515234|gb|ABD75446.1| RecA [Ensifer mexicanus]
 gi|89515236|gb|ABD75447.1| RecA [Ensifer mexicanus]
 gi|89515238|gb|ABD75448.1| RecA [Ensifer mexicanus]
 gi|89515240|gb|ABD75449.1| RecA [Ensifer mexicanus]
 gi|122939093|gb|ABM69128.1| RecA [Ensifer mexicanus]
 gi|122939095|gb|ABM69129.1| RecA [Ensifer mexicanus]
 gi|126797706|gb|ABO27374.1| RecA protein [Sinorhizobium terangae]
 gi|126797708|gb|ABO27375.1| RecA protein [Sinorhizobium terangae]
 gi|126797710|gb|ABO27376.1| RecA protein [Sinorhizobium terangae]
 gi|126797714|gb|ABO27378.1| RecA protein [Sinorhizobium fredii NGR234]
 gi|149393048|gb|ABR26586.1| DNA strand exchange and recombination protein [Sinorhizobium
           chiapanecum]
 gi|149393050|gb|ABR26587.1| DNA strand exchange and recombination protein [Sinorhizobium
           chiapanecum]
 gi|149393052|gb|ABR26588.1| DNA strand exchange and recombination protein [Sinorhizobium
           chiapanecum]
 gi|149393054|gb|ABR26589.1| DNA strand exchange and recombination protein [Sinorhizobium
           chiapanecum]
          Length = 150

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 124/151 (82%), Positives = 139/151 (92%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAAL PRAEIEG+MG+SLPGMQARLMSQAL
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150


>gi|126797700|gb|ABO27371.1| RecA protein [Sinorhizobium saheli]
          Length = 150

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 123/151 (81%), Positives = 140/151 (92%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A++Q
Sbjct: 1   MKLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAAL PRAEIEG+MG++LPGMQARLMSQAL
Sbjct: 120 SVAALVPRAEIEGEMGDNLPGMQARLMSQAL 150


>gi|114150696|gb|ABI51994.1| recombinase A [Pseudomonas sp. PTB2050]
          Length = 163

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 116/163 (71%), Positives = 146/163 (89%)

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
           +LGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+   G
Sbjct: 1   QLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVG 60

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
           +QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDI
Sbjct: 61  LQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDI 120

Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276
           RR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+YG+GI
Sbjct: 121 RRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQILYGKGI 163


>gi|33087833|gb|AAP93047.1| recombination protein A [Yersinia intermedia]
          Length = 188

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 124/190 (65%), Positives = 154/190 (81%), Gaps = 2/190 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 1   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 58

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 59  EIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 118

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 119 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 178

Query: 191 SRSKCILVFI 200
             +  +L+FI
Sbjct: 179 KNANTLLIFI 188


>gi|126797720|gb|ABO27381.1| RecA protein [Sinorhizobium sp. Lc56]
          Length = 150

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 123/151 (81%), Positives = 140/151 (92%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A++Q
Sbjct: 1   MKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGV+L+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVNLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAAL PRAEIEG+MG+SLPGMQARLMSQAL
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150


>gi|110798484|gb|ABG91009.1| recombination protein A [Sinorhizobium medicae]
 gi|110798486|gb|ABG91010.1| recombination protein A [Sinorhizobium medicae]
 gi|126797696|gb|ABO27369.1| RecA protein [Sinorhizobium medicae]
 gi|126797698|gb|ABO27370.1| RecA protein [Sinorhizobium medicae]
          Length = 150

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 125/151 (82%), Positives = 139/151 (92%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAAL PRAEIEG+MG+SLPGMQARLMSQAL
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150


>gi|167508769|gb|ABZ81589.1| recombinase A [Bradyrhizobium japonicum]
          Length = 162

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 121/161 (75%), Positives = 144/161 (89%), Gaps = 1/161 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG      + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++Q
Sbjct: 1   MKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+D
Sbjct: 60  KKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 120 SVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 160


>gi|255989395|gb|ACU51562.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
          Length = 141

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 121/141 (85%), Positives = 135/141 (95%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +
Sbjct: 1   GSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPV 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+S
Sbjct: 61  YARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDS 120

Query: 171 LPGMQARLMSQALRKLTSSIS 191
           LPG+QARLMSQALRKLT+SIS
Sbjct: 121 LPGLQARLMSQALRKLTASIS 141


>gi|289190704|gb|ADC93457.1| recombinase A protein [Bradyrhizobium japonicum]
          Length = 162

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 118/152 (77%), Positives = 140/152 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 11  VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 70

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 71  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 130

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           G+MG++LPG+QARLMSQALRKLT+SI++S  +
Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTM 162


>gi|126797676|gb|ABO27359.1| RecA protein [Sinorhizobium fredii]
          Length = 150

 Score =  254 bits (649), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 124/151 (82%), Positives = 139/151 (92%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGR++EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRVIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAAL PRAEIEG+MG+SLPGMQARLMSQAL
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150


>gi|126797682|gb|ABO27362.1| RecA protein [Sinorhizobium kostiense]
 gi|126797684|gb|ABO27363.1| RecA protein [Sinorhizobium kostiense]
 gi|126797718|gb|ABO27380.1| RecA protein [Sinorhizobium sp. Le39]
          Length = 150

 Score =  254 bits (649), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 124/151 (82%), Positives = 139/151 (92%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAAL PRAEIEG+MG+SLPGMQARLMSQAL
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150


>gi|38602339|emb|CAD58025.1| recombinase A [Acetobacter pasteurianus]
          Length = 152

 Score =  254 bits (649), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 117/152 (76%), Positives = 140/152 (92%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGA+D++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT +++RS  +++F+
Sbjct: 1   VRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGTVARSNTLMIFL 60

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+R+KIGVMFG+PETTTGGNALKFYSSVR+DIRR+GSIKDKD +TGNQTRVKVVKNKMA
Sbjct: 61  NQIRLKIGVMFGNPETTTGGNALKFYSSVRMDIRRIGSIKDKDEVTGNQTRVKVVKNKMA 120

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
            PF+QVEFDIMYGEGI+  GELIDLGVKA +V
Sbjct: 121 PPFRQVEFDIMYGEGITKVGELIDLGVKAGVV 152


>gi|167508759|gb|ABZ81584.1| recombinase A [Bradyrhizobium japonicum]
          Length = 162

 Score =  254 bits (649), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 121/162 (74%), Positives = 144/162 (88%), Gaps = 1/162 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG      + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++Q
Sbjct: 1   MKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+D
Sbjct: 60  KKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           SVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S 
Sbjct: 120 SVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSH 161


>gi|110798476|gb|ABG91005.1| recombination protein A [Sinorhizobium meliloti]
 gi|110798478|gb|ABG91006.1| recombination protein A [Sinorhizobium meliloti]
 gi|110798480|gb|ABG91007.1| recombination protein A [Sinorhizobium meliloti]
 gi|110798482|gb|ABG91008.1| recombination protein A [Sinorhizobium meliloti]
 gi|126797690|gb|ABO27366.1| RecA protein [Sinorhizobium meliloti]
 gi|126797692|gb|ABO27367.1| RecA protein [Sinorhizobium kummerowiae]
          Length = 150

 Score =  254 bits (649), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 125/151 (82%), Positives = 139/151 (92%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VID
Sbjct: 60  KKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAAL PRAEIEG+MG+SLPGMQARLMSQAL
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150


>gi|16565200|gb|AAL26133.1|AF311577_1 recombinase A [Vibrio vulnificus]
          Length = 181

 Score =  254 bits (649), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 121/182 (66%), Positives = 152/182 (83%), Gaps = 2/182 (1%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDQLLVSQPDTGEQALEICDALARSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +F NQ+RMKI
Sbjct: 119 VIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFTNQIRMKI 178

Query: 208 GV 209
           GV
Sbjct: 179 GV 180


>gi|33087789|gb|AAP93025.1| recombination protein A [Yersinia bercovieri]
          Length = 188

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 124/190 (65%), Positives = 154/190 (81%), Gaps = 2/190 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 1   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 58

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 59  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 118

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 119 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 178

Query: 191 SRSKCILVFI 200
             +  +L+FI
Sbjct: 179 KNANTLLIFI 188


>gi|160375121|gb|ABX38944.1| recombinase protein A [Mesorhizobium caraganae]
          Length = 159

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 122/155 (78%), Positives = 141/155 (90%), Gaps = 1/155 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 6   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 64

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 65  VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 124

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIE
Sbjct: 125 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIE 159


>gi|89515224|gb|ABD75441.1| RecA [Sinorhizobium kostiense]
          Length = 150

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 124/151 (82%), Positives = 139/151 (92%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAAL PRAEIEG+MG++LPGMQARLMSQAL
Sbjct: 120 SVAALVPRAEIEGEMGDNLPGMQARLMSQAL 150


>gi|199595018|gb|ACH90973.1| RecA [Stenotrophomonas maltophilia]
 gi|301318424|gb|ADK67127.1| RecA protein [Stenotrophomonas maltophilia]
          Length = 182

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 136/182 (74%), Positives = 157/182 (86%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +EV+ +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EAVEVIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKKGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRS +VDI+V+DSVAALTP+AE
Sbjct: 61  AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSSSVDIVVVDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS  ++VFINQ+RMKIGVM    SPE TTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPEVTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|159147885|dbj|BAF92016.1| recombinase A [Lactobacillus ingluviei]
 gi|159147887|dbj|BAF92017.1| recombinase A [Lactobacillus ingluviei]
 gi|159147889|dbj|BAF92018.1| recombinase A [Lactobacillus ingluviei]
 gi|159147891|dbj|BAF92019.1| recombinase A [Lactobacillus ingluviei]
          Length = 172

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 115/172 (66%), Positives = 150/172 (87%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSGSL +D ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ Q+ GGT A++DAE+A+D
Sbjct: 1   SSGSLAIDEALGVGGYPRGRIIEMYGPESSGKTTVALHAVAEVQQQGGTAAYIDAENAMD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
             YA+ LGVD+ NLL+SQPDTGEQ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG
Sbjct: 61  PEYAKALGVDIDNLLLSQPDTGEQGLQIADALISSGAIDIVVVDSVAALVPRAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
           ++  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG
Sbjct: 121 DAHVGLQARLMSQALRKLSGTINKTKTIAIFINQIREKVGVMFGNPETTPGG 172


>gi|89515222|gb|ABD75440.1| RecA [Sinorhizobium arboris LMG 14919]
          Length = 150

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 124/151 (82%), Positives = 139/151 (92%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAAL PRAEIEG+MG+SLPGMQARLMSQAL
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150


>gi|163960887|gb|ABY49988.1| recombination protein A [Bradyrhizobium sp. CCBAU 85059]
          Length = 158

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 117/155 (75%), Positives = 141/155 (90%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IEV+SSGSLGLDIALG+GG PKGR++EIYGPESSGKTTLALH  A++QK GG CAF+DAE
Sbjct: 4   IEVISSGSLGLDIALGVGGLPKGRVIEIYGPESSGKTTLALHCAAEAQKKGGICAFIDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPD GEQALEI D LVRSGAVD+++IDSVAAL PRAE+E
Sbjct: 64  HALDPVYARKLGVNVDELLISQPDHGEQALEIADTLVRSGAVDVLIIDSVAALVPRAELE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++F
Sbjct: 124 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIF 158


>gi|29652031|gb|AAO87678.1| RecA [Listeria monocytogenes]
 gi|29652033|gb|AAO87679.1| RecA [Listeria monocytogenes]
 gi|29652056|gb|AAO87690.1| RecA [Listeria monocytogenes]
 gi|29652076|gb|AAO87700.1| RecA [Listeria monocytogenes]
          Length = 180

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 121/182 (66%), Positives = 152/182 (83%), Gaps = 2/182 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MR 204
           +R
Sbjct: 179 IR 180


>gi|38602337|emb|CAD58024.1| recombinase A [Acetobacter orleanensis]
          Length = 152

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 118/152 (77%), Positives = 139/152 (91%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGA+D++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT S++RS  +++F+
Sbjct: 1   VRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGSVARSNTMMIFL 60

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+R+KIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIKDKD + GNQTRVKVVKNKMA
Sbjct: 61  NQIRLKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKDKDEVVGNQTRVKVVKNKMA 120

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
            PF+QVEFDIMYGEGIS  GELIDLGVKA +V
Sbjct: 121 PPFRQVEFDIMYGEGISKVGELIDLGVKAGVV 152


>gi|29652015|gb|AAO87670.1| RecA [Listeria monocytogenes]
 gi|29652302|gb|AAO87812.1| RecA [Listeria monocytogenes]
          Length = 181

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 121/182 (66%), Positives = 152/182 (83%), Gaps = 2/182 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MR 204
           +R
Sbjct: 179 IR 180


>gi|126797726|gb|ABO27384.1| RecA protein [Agrobacterium rhizogenes]
          Length = 150

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 124/151 (82%), Positives = 139/151 (92%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VID
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAALTPRAEIEG+MG+SLPG+QARLMSQAL
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQAL 150


>gi|29651993|gb|AAO87659.1| RecA [Listeria monocytogenes]
          Length = 180

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 121/182 (66%), Positives = 152/182 (83%), Gaps = 2/182 (1%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKT
Sbjct: 1   QIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKT 58

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LV
Sbjct: 59  TVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALV 118

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FIN
Sbjct: 119 RSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFIN 178

Query: 202 QM 203
           Q+
Sbjct: 179 QI 180


>gi|38602311|emb|CAD58011.1| recombinase A [Gluconacetobacter oboediens]
          Length = 152

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 120/151 (79%), Positives = 138/151 (91%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGA+D++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT S+SRS  +L+F+
Sbjct: 1   VRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGSVSRSNTMLIFL 60

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+R+KIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDKD +TGNQTRVKVVKNKMA
Sbjct: 61  NQIRLKIGVMFGSPETTTGGNALKFYASVRMDIRRIGSIKDKDKVTGNQTRVKVVKNKMA 120

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASI 291
            PF+QVEFDIMYGEGIS  GELIDL VKA I
Sbjct: 121 PPFRQVEFDIMYGEGISKVGELIDLCVKAGI 151


>gi|126797722|gb|ABO27382.1| RecA protein [Rhizobium indigoferae]
          Length = 150

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 122/151 (80%), Positives = 140/151 (92%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAALTPRAEIEG+MG+SLPG+QARLMSQAL
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQAL 150


>gi|158147291|gb|ABW22699.1| recA [Bradyrhizobium liaoningense]
          Length = 150

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 117/150 (78%), Positives = 139/150 (92%)

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
           IALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLG
Sbjct: 1   IALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLG 60

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           V++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QA
Sbjct: 61  VNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELEGEMGDALPGLQA 120

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMK 206
           RLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 RLMSQALRKLTASINKSNTMVIFINQIRMK 150


>gi|38602331|emb|CAD58021.1| recombinase A [Acetobacter estunensis]
          Length = 152

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 117/152 (76%), Positives = 139/152 (91%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGA+D++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT ++SRS  +L+F+
Sbjct: 1   VRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGTVSRSNTLLIFL 60

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+R+KIGVMFG+PETTTGGNALKFY+SVR+DIRR+G+IKDKD + GNQTRVKVVKNKMA
Sbjct: 61  NQIRLKIGVMFGNPETTTGGNALKFYASVRMDIRRIGAIKDKDEVVGNQTRVKVVKNKMA 120

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
            PF+QVEFDIMYGEGIS  GELIDLGVKA +V
Sbjct: 121 PPFRQVEFDIMYGEGISKMGELIDLGVKAGVV 152


>gi|33087829|gb|AAP93045.1| recombination protein A [Yersinia intermedia]
          Length = 184

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 122/186 (65%), Positives = 152/186 (81%), Gaps = 2/186 (1%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           L QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSG
Sbjct: 1   LGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 58

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D 
Sbjct: 59  KTTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDA 118

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+F
Sbjct: 119 LTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIF 178

Query: 200 INQMRM 205
           INQ+RM
Sbjct: 179 INQIRM 184


>gi|299737730|gb|ADJ37188.1| recombinase A [Burkholderia sp. s25]
          Length = 158

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 119/158 (75%), Positives = 141/158 (89%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  
Sbjct: 1   GSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQ 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+S
Sbjct: 61  YAGKLGVNVNDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDS 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           LPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG
Sbjct: 121 LPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 158


>gi|289190654|gb|ADC93432.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-21]
          Length = 162

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 118/152 (77%), Positives = 139/152 (91%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE
Sbjct: 11  VETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 70

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 71  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 130

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           G+MG++LPG+QARLMSQALRKLT+SI++S  +
Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTM 162


>gi|126797678|gb|ABO27360.1| RecA protein [Sinorhizobium arboris]
 gi|126797680|gb|ABO27361.1| RecA protein [Sinorhizobium arboris]
          Length = 150

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 123/151 (81%), Positives = 139/151 (92%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAAL PRAEIEG+MG+SLPGMQARLMSQAL
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150


>gi|126797724|gb|ABO27383.1| RecA protein [Rhizobium galegae]
          Length = 150

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 126/151 (83%), Positives = 138/151 (91%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  +I E IE VS+GSL LDIALGIGG PKGRI EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNDNIVE-IETVSTGSLSLDIALGIGGLPKGRIFEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++VID
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAALTPRAEIEG+MG+SLPG+QARLMSQAL
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQAL 150


>gi|126797704|gb|ABO27373.1| RecA protein [Ensifer adhaerens]
          Length = 150

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 125/151 (82%), Positives = 138/151 (91%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG + SI E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VID
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAAL PRAEIEG+MG+SLPGMQARLMSQAL
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150


>gi|126797728|gb|ABO27385.1| RecA protein [Agrobacterium rhizogenes]
          Length = 150

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 123/151 (81%), Positives = 139/151 (92%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAALTPRAEIEG+MG+SLPG+QARLMSQAL
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQAL 150


>gi|25991771|gb|AAN76926.1| RecA [Burkholderia ambifaria]
 gi|25991817|gb|AAN76949.1| RecA [Burkholderia ambifaria]
 gi|25991825|gb|AAN76953.1| RecA [Burkholderia ambifaria]
          Length = 169

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 124/170 (72%), Positives = 149/170 (87%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|33087793|gb|AAP93027.1| recombination protein A [Yersinia bercovieri]
          Length = 180

 Score =  253 bits (646), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 123/182 (67%), Positives = 150/182 (82%), Gaps = 2/182 (1%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ+RMKI
Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQIRMKI 178

Query: 208 GV 209
           GV
Sbjct: 179 GV 180


>gi|325650934|emb|CBY89650.1| RecA protein [Rhodopseudomonas sp. R-45974=B454]
 gi|325650936|emb|CBY89651.1| RecA protein [Rhodopseudomonas sp. R-45977=B462]
          Length = 165

 Score =  253 bits (646), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 120/164 (73%), Positives = 145/164 (88%), Gaps = 1/164 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G++M+LG      + IEV+SSGSLGLDIALG+GG PKGR++EIYGPESSGKTTLALH  A
Sbjct: 1   GSVMKLGKNDRSMD-IEVISSGSLGLDIALGVGGLPKGRVIEIYGPESSGKTTLALHCAA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           ++QK GG CAF+DAEHALD +YARKLGV++  LLISQPD GEQALEI D LVRSGAVD++
Sbjct: 60  EAQKKGGICAFIDAEHALDPVYARKLGVNVDELLISQPDHGEQALEIADTLVRSGAVDVL 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           +IDSVAAL PRAE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 120 IIDSVAALVPRAELEGEMGDALPGLQARLMSQALRKLTASINKS 163


>gi|167508767|gb|ABZ81588.1| recombinase A [Bradyrhizobium elkanii]
          Length = 162

 Score =  253 bits (646), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 120/162 (74%), Positives = 143/162 (88%), Gaps = 1/162 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG      + +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ Q
Sbjct: 1   MKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+D
Sbjct: 60  KKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           SVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S 
Sbjct: 120 SVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSH 161


>gi|193227225|emb|CAQ17082.1| recombinase A [Ensifer maghrebium]
 gi|193227227|emb|CAQ17083.1| recombinase A [Ensifer maghrebium]
 gi|193227231|emb|CAQ17084.1| recombinase A [Ensifer maghrebium]
          Length = 149

 Score =  253 bits (646), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 124/150 (82%), Positives = 139/150 (92%), Gaps = 1/150 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TI
Sbjct: 1   KGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 60  AEAQKKGGICAFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +V+DSVAAL PRAEIEG+MG+SLPGMQARL
Sbjct: 120 LVVDSVAALVPRAEIEGEMGDSLPGMQARL 149


>gi|126797686|gb|ABO27364.1| RecA protein [Ensifer adhaerens]
 gi|126797688|gb|ABO27365.1| RecA protein [Sinorhizobium sp. CFN_EC1002]
          Length = 150

 Score =  253 bits (646), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 124/151 (82%), Positives = 138/151 (91%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG + SI E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL T+A++Q
Sbjct: 1   MKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAAL PRAEIEG+MG+SLPGMQARLMSQAL
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150


>gi|189016834|gb|ACD70384.1| recombinase protein A [Mesorhizobium sp. CCBAU 65327]
          Length = 158

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 121/155 (78%), Positives = 141/155 (90%), Gaps = 1/155 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 5   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 64  IEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIE
Sbjct: 124 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIE 158


>gi|301601064|dbj|BAJ13221.1| RecA [Agrobacterium vitis]
          Length = 160

 Score =  253 bits (645), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 122/141 (86%), Positives = 133/141 (94%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +Y
Sbjct: 20  SLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGVCAFVDAEHALDPVY 79

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           ARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTP+AEIEG+MG+SL
Sbjct: 80  ARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPKAEIEGEMGDSL 139

Query: 172 PGMQARLMSQALRKLTSSISR 192
           PGMQARLMSQALRKLT SISR
Sbjct: 140 PGMQARLMSQALRKLTGSISR 160


>gi|157168634|gb|ABV25705.1| recombinase A [Pectobacterium atrosepticum]
          Length = 162

 Score =  253 bits (645), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 117/161 (72%), Positives = 141/161 (87%)

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPD
Sbjct: 1   IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPD 60

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  
Sbjct: 61  TGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 120

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           ++ ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SV
Sbjct: 121 NLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASV 161


>gi|25991861|gb|AAN76971.1| RecA [Burkholderia cepacia]
          Length = 169

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 126/170 (74%), Positives = 148/170 (87%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|25991857|gb|AAN76969.1| RecA [Burkholderia cenocepacia]
 gi|25991877|gb|AAN76979.1| RecA [Burkholderia cenocepacia]
          Length = 169

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 125/170 (73%), Positives = 148/170 (87%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|193227215|emb|CAQ17078.1| recombinase A [Sinorhizobium americanum]
          Length = 149

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 122/150 (81%), Positives = 139/150 (92%), Gaps = 1/150 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+
Sbjct: 1   KGSIMKLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTV 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 60  AEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +V+DSVAAL PRAEIEG+MG+SLPGMQARL
Sbjct: 120 LVVDSVAALVPRAEIEGEMGDSLPGMQARL 149


>gi|25991795|gb|AAN76938.1| RecA [Burkholderia cenocepacia]
 gi|25991797|gb|AAN76939.1| RecA [Burkholderia cenocepacia]
 gi|25991799|gb|AAN76940.1| RecA [Burkholderia cenocepacia]
 gi|25991819|gb|AAN76950.1| RecA [Burkholderia cenocepacia]
 gi|25991831|gb|AAN76956.1| RecA [Burkholderia cenocepacia]
 gi|25991841|gb|AAN76961.1| RecA [Burkholderia cenocepacia]
 gi|25991851|gb|AAN76966.1| RecA [Burkholderia cepacia]
 gi|25991853|gb|AAN76967.1| RecA [Burkholderia cepacia]
 gi|25991863|gb|AAN76972.1| RecA [Burkholderia cepacia]
 gi|25991869|gb|AAN76975.1| RecA [Burkholderia cenocepacia]
 gi|25991871|gb|AAN76976.1| RecA [Burkholderia cepacia]
 gi|25991875|gb|AAN76978.1| RecA [Burkholderia cenocepacia]
          Length = 169

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 125/170 (73%), Positives = 148/170 (87%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|313669870|gb|ADR73126.1| recombination protein A [Bradyrhizobium sp. OM6]
 gi|313669876|gb|ADR73129.1| recombination protein A [Bradyrhizobium sp. OM9]
 gi|313669912|gb|ADR73147.1| recombination protein A [Bradyrhizobium sp. OM27]
 gi|313669972|gb|ADR73177.1| recombination protein A [Bradyrhizobium sp. OO57]
 gi|313669978|gb|ADR73180.1| recombination protein A [Bradyrhizobium sp. OO60]
 gi|313669990|gb|ADR73186.1| recombination protein A [Bradyrhizobium sp. OO66]
 gi|313670006|gb|ADR73194.1| recombination protein A [Bradyrhizobium sp. OO74]
 gi|313670012|gb|ADR73197.1| recombination protein A [Bradyrhizobium sp. OO77]
 gi|313670020|gb|ADR73201.1| recombination protein A [Bradyrhizobium sp. OO81]
 gi|313670026|gb|ADR73204.1| recombination protein A [Bradyrhizobium sp. OO84]
 gi|313670028|gb|ADR73205.1| recombination protein A [Bradyrhizobium sp. OO85]
 gi|313670030|gb|ADR73206.1| recombination protein A [Bradyrhizobium sp. OO86]
 gi|313670046|gb|ADR73214.1| recombination protein A [Bradyrhizobium sp. OO94]
 gi|313670056|gb|ADR73219.1| recombination protein A [Bradyrhizobium sp. OO99]
 gi|313670058|gb|ADR73220.1| recombination protein A [Bradyrhizobium sp. OO100]
 gi|313670060|gb|ADR73221.1| recombination protein A [Bradyrhizobium sp. OO101]
          Length = 154

 Score =  252 bits (644), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 120/146 (82%), Positives = 136/146 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 9   IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 68

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E
Sbjct: 69  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELE 128

Query: 165 GDMGESLPGMQARLMSQALRKLTSSI 190
           G+MG++LPG+QARLMSQALRKLT+SI
Sbjct: 129 GEMGDALPGLQARLMSQALRKLTASI 154


>gi|25991787|gb|AAN76934.1| RecA [Burkholderia cepacia]
 gi|25991805|gb|AAN76943.1| RecA [Burkholderia cepacia]
 gi|25991879|gb|AAN76980.1| RecA [Burkholderia cepacia]
          Length = 169

 Score =  252 bits (644), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 125/170 (73%), Positives = 148/170 (87%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|213950734|gb|ACJ54612.1| recombination protein A [Bradyrhizobium elkanii]
          Length = 160

 Score =  252 bits (644), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 120/161 (74%), Positives = 143/161 (88%), Gaps = 1/161 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           A+M+LG      + +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+
Sbjct: 1   AMMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V
Sbjct: 60  GQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           +DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI+
Sbjct: 120 VDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASIN 160


>gi|25991839|gb|AAN76960.1| RecA [Burkholderia vietnamiensis]
 gi|25991843|gb|AAN76962.1| RecA [Burkholderia vietnamiensis]
 gi|25991845|gb|AAN76963.1| RecA [Burkholderia vietnamiensis]
 gi|25991847|gb|AAN76964.1| RecA [Burkholderia vietnamiensis]
          Length = 169

 Score =  252 bits (644), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 125/170 (73%), Positives = 149/170 (87%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|25991775|gb|AAN76928.1| RecA [Burkholderia cepacia]
 gi|25991781|gb|AAN76931.1| RecA [Burkholderia cepacia]
 gi|25991811|gb|AAN76946.1| RecA [Burkholderia cepacia]
 gi|25991827|gb|AAN76954.1| RecA [Burkholderia cepacia]
 gi|25991855|gb|AAN76968.1| RecA [Burkholderia cepacia]
          Length = 169

 Score =  252 bits (644), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 125/170 (73%), Positives = 148/170 (87%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|325651019|emb|CBY89331.1| RecA protein [Bradyrhizobium japonicum]
          Length = 158

 Score =  252 bits (644), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 119/159 (74%), Positives = 142/159 (89%), Gaps = 1/159 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG      + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRK
Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRK 158


>gi|313670302|gb|ADR73342.1| recombination protein A [Bradyrhizobium sp. 61A124]
          Length = 154

 Score =  252 bits (644), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 119/146 (81%), Positives = 136/146 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 9   IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 68

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 69  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 128

Query: 165 GDMGESLPGMQARLMSQALRKLTSSI 190
           G+MG++LPG+QARLMSQALRKLT+SI
Sbjct: 129 GEMGDALPGLQARLMSQALRKLTASI 154


>gi|158631804|gb|ABW75007.1| RecA [Rhizobium sp. CCBAU 83526]
          Length = 167

 Score =  252 bits (644), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 119/153 (77%), Positives = 139/153 (90%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG+ G P+GR +  +  ESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGV
Sbjct: 15  ALGVCGLPRGRFINPWPKESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGV 74

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           DL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QAR
Sbjct: 75  DLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQAR 134

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           LMSQALRKLT+SIS+S  +++FINQ+RMKIGVM
Sbjct: 135 LMSQALRKLTASISKSNTMVIFINQIRMKIGVM 167


>gi|25991801|gb|AAN76941.1| RecA [Burkholderia cepacia]
          Length = 169

 Score =  252 bits (644), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 125/170 (73%), Positives = 148/170 (87%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKHFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|193227217|emb|CAQ17079.1| recombinase A [Ensifer xericitae]
 gi|193227221|emb|CAQ17080.1| recombinase A [Ensifer xericitae]
 gi|193227223|emb|CAQ17081.1| recombinase A [Ensifer xericitae]
          Length = 149

 Score =  252 bits (644), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 122/150 (81%), Positives = 139/150 (92%), Gaps = 1/150 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG++ S+ E IE +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TI
Sbjct: 1   KGSIMKLGAKDSVIE-IETISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 60  AEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +V+DSVAAL PRAEIEG+MG+SLPGMQARL
Sbjct: 120 LVVDSVAALVPRAEIEGEMGDSLPGMQARL 149


>gi|16565166|gb|AAL26116.1|AF311560_1 recombinase A [Vibrio vulnificus]
          Length = 181

 Score =  252 bits (643), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 121/182 (66%), Positives = 152/182 (83%), Gaps = 2/182 (1%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDQLLVSQPDTGEQALEICDALARSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IV+DSVAALT +AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VIVVDSVAALTRKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178

Query: 208 GV 209
           GV
Sbjct: 179 GV 180


>gi|25991873|gb|AAN76977.1| RecA [Burkholderia cepacia]
          Length = 169

 Score =  252 bits (643), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 125/170 (73%), Positives = 148/170 (87%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|189016828|gb|ACD70381.1| recombinase protein A [Mesorhizobium sp. CCBAU 03299]
          Length = 158

 Score =  252 bits (643), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 121/154 (78%), Positives = 140/154 (90%), Gaps = 1/154 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 6   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 64

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 65  VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 124

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEI
Sbjct: 125 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEI 158


>gi|25991773|gb|AAN76927.1| RecA [Burkholderia cepacia]
          Length = 169

 Score =  252 bits (643), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 125/170 (73%), Positives = 148/170 (87%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GDATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|25991783|gb|AAN76932.1| RecA [Burkholderia multivorans]
 gi|25991785|gb|AAN76933.1| RecA [Burkholderia multivorans]
 gi|25991835|gb|AAN76958.1| RecA [Burkholderia multivorans]
          Length = 169

 Score =  252 bits (643), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 125/170 (73%), Positives = 149/170 (87%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|299737728|gb|ADJ37187.1| recombinase A [Burkholderia sp. CCBAU 25371]
          Length = 157

 Score =  252 bits (643), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 118/157 (75%), Positives = 140/157 (89%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  
Sbjct: 1   GSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKIGGTAAFIDAEHALDIQ 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+S
Sbjct: 61  YAGKLGVNVNDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDS 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           LPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI
Sbjct: 121 LPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 157


>gi|25991779|gb|AAN76930.1| RecA [Burkholderia cepacia]
 gi|25991789|gb|AAN76935.1| RecA [Burkholderia cepacia]
 gi|25991807|gb|AAN76944.1| RecA [Burkholderia cepacia]
 gi|25991823|gb|AAN76952.1| RecA [Burkholderia cepacia]
 gi|25991829|gb|AAN76955.1| RecA [Burkholderia cepacia]
          Length = 169

 Score =  252 bits (643), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 125/170 (73%), Positives = 148/170 (87%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|25991803|gb|AAN76942.1| RecA [Burkholderia cepacia]
 gi|25991809|gb|AAN76945.1| RecA [Burkholderia cepacia]
 gi|25991833|gb|AAN76957.1| RecA [Burkholderia cepacia]
          Length = 169

 Score =  251 bits (642), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 125/170 (73%), Positives = 148/170 (87%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|148840348|gb|ABR14605.1| RecA [Rhizobium undicola]
          Length = 150

 Score =  251 bits (642), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 122/151 (80%), Positives = 138/151 (91%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG+   + E I+ VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGANEKVVE-IDTVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAALTPRAEIEG+MG+SLPGMQARLMSQAL
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGMQARLMSQAL 150


>gi|25991813|gb|AAN76947.1| RecA [Burkholderia cenocepacia]
 gi|25991849|gb|AAN76965.1| RecA [Burkholderia cepacia]
 gi|25991859|gb|AAN76970.1| RecA [Burkholderia cepacia]
          Length = 169

 Score =  251 bits (642), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 125/170 (73%), Positives = 148/170 (87%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|29652047|gb|AAO87686.1| RecA [Listeria monocytogenes]
 gi|29652088|gb|AAO87706.1| RecA [Listeria monocytogenes]
          Length = 179

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 120/181 (66%), Positives = 151/181 (83%), Gaps = 2/181 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 M 203
           +
Sbjct: 179 I 179


>gi|25991793|gb|AAN76937.1| RecA [Burkholderia cenocepacia]
          Length = 169

 Score =  251 bits (641), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 124/170 (72%), Positives = 148/170 (87%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           A+ AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   AVAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|313669860|gb|ADR73121.1| recombination protein A [Bradyrhizobium sp. OM1]
 gi|313669862|gb|ADR73122.1| recombination protein A [Bradyrhizobium sp. OM2]
 gi|313669864|gb|ADR73123.1| recombination protein A [Bradyrhizobium sp. OM3]
 gi|313669866|gb|ADR73124.1| recombination protein A [Bradyrhizobium sp. OM4]
 gi|313669868|gb|ADR73125.1| recombination protein A [Bradyrhizobium sp. OM5]
 gi|313669872|gb|ADR73127.1| recombination protein A [Bradyrhizobium sp. OM7]
 gi|313669874|gb|ADR73128.1| recombination protein A [Bradyrhizobium sp. OM8]
 gi|313669878|gb|ADR73130.1| recombination protein A [Bradyrhizobium sp. OM10]
 gi|313669880|gb|ADR73131.1| recombination protein A [Bradyrhizobium sp. OM11]
 gi|313669882|gb|ADR73132.1| recombination protein A [Bradyrhizobium sp. OM12]
 gi|313669884|gb|ADR73133.1| recombination protein A [Bradyrhizobium sp. OM13]
 gi|313669886|gb|ADR73134.1| recombination protein A [Bradyrhizobium sp. OM14]
 gi|313669888|gb|ADR73135.1| recombination protein A [Bradyrhizobium sp. OM15]
 gi|313669890|gb|ADR73136.1| recombination protein A [Bradyrhizobium sp. OM16]
 gi|313669892|gb|ADR73137.1| recombination protein A [Bradyrhizobium sp. OM17]
 gi|313669894|gb|ADR73138.1| recombination protein A [Bradyrhizobium sp. OM18]
 gi|313669896|gb|ADR73139.1| recombination protein A [Bradyrhizobium sp. OM19]
 gi|313669898|gb|ADR73140.1| recombination protein A [Bradyrhizobium sp. OM20]
 gi|313669900|gb|ADR73141.1| recombination protein A [Bradyrhizobium sp. OM21]
 gi|313669902|gb|ADR73142.1| recombination protein A [Bradyrhizobium sp. OM22]
 gi|313669904|gb|ADR73143.1| recombination protein A [Bradyrhizobium sp. OM23]
 gi|313669906|gb|ADR73144.1| recombination protein A [Bradyrhizobium sp. OM24]
 gi|313669908|gb|ADR73145.1| recombination protein A [Bradyrhizobium sp. OM25]
 gi|313669910|gb|ADR73146.1| recombination protein A [Bradyrhizobium sp. OM26]
 gi|313669914|gb|ADR73148.1| recombination protein A [Bradyrhizobium sp. OM28]
 gi|313669916|gb|ADR73149.1| recombination protein A [Bradyrhizobium sp. OM29]
 gi|313669918|gb|ADR73150.1| recombination protein A [Bradyrhizobium sp. OM30]
 gi|313669920|gb|ADR73151.1| recombination protein A [Bradyrhizobium sp. OM31]
 gi|313669922|gb|ADR73152.1| recombination protein A [Bradyrhizobium sp. OM32]
 gi|313669924|gb|ADR73153.1| recombination protein A [Bradyrhizobium sp. OM33]
 gi|313669926|gb|ADR73154.1| recombination protein A [Bradyrhizobium sp. OM34]
 gi|313669928|gb|ADR73155.1| recombination protein A [Bradyrhizobium sp. OM35]
 gi|313669930|gb|ADR73156.1| recombination protein A [Bradyrhizobium sp. OM36]
 gi|313669932|gb|ADR73157.1| recombination protein A [Bradyrhizobium sp. OM37]
 gi|313669934|gb|ADR73158.1| recombination protein A [Bradyrhizobium sp. OM38]
 gi|313669936|gb|ADR73159.1| recombination protein A [Bradyrhizobium sp. OM39]
 gi|313669938|gb|ADR73160.1| recombination protein A [Bradyrhizobium sp. OM40]
 gi|313669940|gb|ADR73161.1| recombination protein A [Bradyrhizobium sp. OM41]
 gi|313669942|gb|ADR73162.1| recombination protein A [Bradyrhizobium sp. OM42]
 gi|313669944|gb|ADR73163.1| recombination protein A [Bradyrhizobium sp. OM43]
 gi|313669946|gb|ADR73164.1| recombination protein A [Bradyrhizobium sp. OM44]
 gi|313669948|gb|ADR73165.1| recombination protein A [Bradyrhizobium sp. OM45]
 gi|313669950|gb|ADR73166.1| recombination protein A [Bradyrhizobium sp. OM46]
 gi|313669952|gb|ADR73167.1| recombination protein A [Bradyrhizobium sp. OM47]
 gi|313669954|gb|ADR73168.1| recombination protein A [Bradyrhizobium sp. OM48]
 gi|313669956|gb|ADR73169.1| recombination protein A [Bradyrhizobium sp. OM49]
 gi|313669958|gb|ADR73170.1| recombination protein A [Bradyrhizobium sp. OM50]
 gi|313669960|gb|ADR73171.1| recombination protein A [Bradyrhizobium sp. OM51]
 gi|313669962|gb|ADR73172.1| recombination protein A [Bradyrhizobium sp. OM52]
 gi|313669964|gb|ADR73173.1| recombination protein A [Bradyrhizobium sp. OM53]
 gi|313669966|gb|ADR73174.1| recombination protein A [Bradyrhizobium sp. OM54]
 gi|313669968|gb|ADR73175.1| recombination protein A [Bradyrhizobium sp. OM55]
 gi|313669970|gb|ADR73176.1| recombination protein A [Bradyrhizobium sp. OO56]
 gi|313669974|gb|ADR73178.1| recombination protein A [Bradyrhizobium sp. OO58]
 gi|313669976|gb|ADR73179.1| recombination protein A [Bradyrhizobium sp. OO59]
 gi|313669980|gb|ADR73181.1| recombination protein A [Bradyrhizobium sp. OO61]
 gi|313669982|gb|ADR73182.1| recombination protein A [Bradyrhizobium sp. OO62]
 gi|313669984|gb|ADR73183.1| recombination protein A [Bradyrhizobium sp. OO63]
 gi|313669986|gb|ADR73184.1| recombination protein A [Bradyrhizobium sp. OO64]
 gi|313669988|gb|ADR73185.1| recombination protein A [Bradyrhizobium sp. OO65]
 gi|313669992|gb|ADR73187.1| recombination protein A [Bradyrhizobium sp. OO67]
 gi|313669994|gb|ADR73188.1| recombination protein A [Bradyrhizobium sp. OO68]
 gi|313669996|gb|ADR73189.1| recombination protein A [Bradyrhizobium sp. OO69]
 gi|313669998|gb|ADR73190.1| recombination protein A [Bradyrhizobium sp. OO70]
 gi|313670000|gb|ADR73191.1| recombination protein A [Bradyrhizobium sp. OO71]
 gi|313670002|gb|ADR73192.1| recombination protein A [Bradyrhizobium sp. OO72]
 gi|313670004|gb|ADR73193.1| recombination protein A [Bradyrhizobium sp. OO73]
 gi|313670008|gb|ADR73195.1| recombination protein A [Bradyrhizobium sp. OO75]
 gi|313670010|gb|ADR73196.1| recombination protein A [Bradyrhizobium sp. OO76]
 gi|313670014|gb|ADR73198.1| recombination protein A [Bradyrhizobium sp. OO78]
 gi|313670016|gb|ADR73199.1| recombination protein A [Bradyrhizobium sp. OO79]
 gi|313670018|gb|ADR73200.1| recombination protein A [Bradyrhizobium sp. OO80]
 gi|313670022|gb|ADR73202.1| recombination protein A [Bradyrhizobium sp. OO82]
 gi|313670024|gb|ADR73203.1| recombination protein A [Bradyrhizobium sp. OO83]
 gi|313670032|gb|ADR73207.1| recombination protein A [Bradyrhizobium sp. OO87]
 gi|313670034|gb|ADR73208.1| recombination protein A [Bradyrhizobium sp. OO88]
 gi|313670036|gb|ADR73209.1| recombination protein A [Bradyrhizobium sp. OO89]
 gi|313670038|gb|ADR73210.1| recombination protein A [Bradyrhizobium sp. OO90]
 gi|313670040|gb|ADR73211.1| recombination protein A [Bradyrhizobium sp. OO91]
 gi|313670042|gb|ADR73212.1| recombination protein A [Bradyrhizobium sp. OO92]
 gi|313670044|gb|ADR73213.1| recombination protein A [Bradyrhizobium sp. OO93]
 gi|313670048|gb|ADR73215.1| recombination protein A [Bradyrhizobium sp. OO95]
 gi|313670050|gb|ADR73216.1| recombination protein A [Bradyrhizobium sp. OO96]
 gi|313670052|gb|ADR73217.1| recombination protein A [Bradyrhizobium sp. OO97]
 gi|313670054|gb|ADR73218.1| recombination protein A [Bradyrhizobium sp. OO98]
 gi|313670062|gb|ADR73222.1| recombination protein A [Bradyrhizobium sp. OO102]
 gi|313670064|gb|ADR73223.1| recombination protein A [Bradyrhizobium sp. OO103]
 gi|313670066|gb|ADR73224.1| recombination protein A [Bradyrhizobium sp. OO104]
 gi|313670068|gb|ADR73225.1| recombination protein A [Bradyrhizobium sp. OO105]
 gi|313670070|gb|ADR73226.1| recombination protein A [Bradyrhizobium sp. OO106]
 gi|313670072|gb|ADR73227.1| recombination protein A [Bradyrhizobium sp. OO107]
 gi|313670074|gb|ADR73228.1| recombination protein A [Bradyrhizobium sp. OO108]
 gi|313670076|gb|ADR73229.1| recombination protein A [Bradyrhizobium sp. OO109]
 gi|313670078|gb|ADR73230.1| recombination protein A [Bradyrhizobium sp. OO110]
 gi|313670080|gb|ADR73231.1| recombination protein A [Bradyrhizobium sp. HM111]
 gi|313670082|gb|ADR73232.1| recombination protein A [Bradyrhizobium sp. HM112]
 gi|313670084|gb|ADR73233.1| recombination protein A [Bradyrhizobium sp. HM113]
 gi|313670086|gb|ADR73234.1| recombination protein A [Bradyrhizobium sp. HM114]
 gi|313670088|gb|ADR73235.1| recombination protein A [Bradyrhizobium sp. HM115]
 gi|313670092|gb|ADR73237.1| recombination protein A [Bradyrhizobium sp. HM117]
 gi|313670094|gb|ADR73238.1| recombination protein A [Bradyrhizobium sp. HM118]
 gi|313670096|gb|ADR73239.1| recombination protein A [Bradyrhizobium sp. HM119]
 gi|313670098|gb|ADR73240.1| recombination protein A [Bradyrhizobium sp. HM120]
 gi|313670100|gb|ADR73241.1| recombination protein A [Bradyrhizobium sp. HM121]
 gi|313670102|gb|ADR73242.1| recombination protein A [Bradyrhizobium sp. HM122]
 gi|313670104|gb|ADR73243.1| recombination protein A [Bradyrhizobium sp. HM123]
 gi|313670106|gb|ADR73244.1| recombination protein A [Bradyrhizobium sp. HM124]
 gi|313670108|gb|ADR73245.1| recombination protein A [Bradyrhizobium sp. HM125]
 gi|313670110|gb|ADR73246.1| recombination protein A [Bradyrhizobium sp. HM126]
 gi|313670112|gb|ADR73247.1| recombination protein A [Bradyrhizobium sp. HM127]
 gi|313670114|gb|ADR73248.1| recombination protein A [Bradyrhizobium sp. HM128]
 gi|313670116|gb|ADR73249.1| recombination protein A [Bradyrhizobium sp. HM129]
 gi|313670118|gb|ADR73250.1| recombination protein A [Bradyrhizobium sp. HM130]
 gi|313670122|gb|ADR73252.1| recombination protein A [Bradyrhizobium sp. HM132]
 gi|313670124|gb|ADR73253.1| recombination protein A [Bradyrhizobium sp. HM133]
 gi|313670126|gb|ADR73254.1| recombination protein A [Bradyrhizobium sp. HM134]
 gi|313670128|gb|ADR73255.1| recombination protein A [Bradyrhizobium sp. HM135]
 gi|313670130|gb|ADR73256.1| recombination protein A [Bradyrhizobium sp. HM136]
 gi|313670132|gb|ADR73257.1| recombination protein A [Bradyrhizobium sp. HM137]
 gi|313670134|gb|ADR73258.1| recombination protein A [Bradyrhizobium sp. HM138]
 gi|313670136|gb|ADR73259.1| recombination protein A [Bradyrhizobium sp. HM139]
 gi|313670140|gb|ADR73261.1| recombination protein A [Bradyrhizobium sp. HM141]
 gi|313670142|gb|ADR73262.1| recombination protein A [Bradyrhizobium sp. HM142]
 gi|313670144|gb|ADR73263.1| recombination protein A [Bradyrhizobium sp. HM143]
 gi|313670146|gb|ADR73264.1| recombination protein A [Bradyrhizobium sp. HM144]
 gi|313670148|gb|ADR73265.1| recombination protein A [Bradyrhizobium sp. HM145]
 gi|313670150|gb|ADR73266.1| recombination protein A [Bradyrhizobium sp. HM146]
 gi|313670152|gb|ADR73267.1| recombination protein A [Bradyrhizobium sp. HM147]
 gi|313670154|gb|ADR73268.1| recombination protein A [Bradyrhizobium sp. HM148]
 gi|313670156|gb|ADR73269.1| recombination protein A [Bradyrhizobium sp. HM149]
 gi|313670158|gb|ADR73270.1| recombination protein A [Bradyrhizobium sp. HM150]
 gi|313670160|gb|ADR73271.1| recombination protein A [Bradyrhizobium sp. HM151]
 gi|313670162|gb|ADR73272.1| recombination protein A [Bradyrhizobium sp. HM152]
 gi|313670164|gb|ADR73273.1| recombination protein A [Bradyrhizobium sp. HM153]
 gi|313670166|gb|ADR73274.1| recombination protein A [Bradyrhizobium sp. HM154]
 gi|313670168|gb|ADR73275.1| recombination protein A [Bradyrhizobium sp. HM155]
 gi|313670170|gb|ADR73276.1| recombination protein A [Bradyrhizobium sp. HM156]
 gi|313670172|gb|ADR73277.1| recombination protein A [Bradyrhizobium sp. HM157]
 gi|313670174|gb|ADR73278.1| recombination protein A [Bradyrhizobium sp. HM158]
 gi|313670176|gb|ADR73279.1| recombination protein A [Bradyrhizobium sp. HM159]
 gi|313670178|gb|ADR73280.1| recombination protein A [Bradyrhizobium sp. HM160]
 gi|313670180|gb|ADR73281.1| recombination protein A [Bradyrhizobium sp. HM161]
 gi|313670182|gb|ADR73282.1| recombination protein A [Bradyrhizobium sp. HM162]
 gi|313670184|gb|ADR73283.1| recombination protein A [Bradyrhizobium sp. HM163]
 gi|313670186|gb|ADR73284.1| recombination protein A [Bradyrhizobium sp. HM164]
 gi|313670188|gb|ADR73285.1| recombination protein A [Bradyrhizobium sp. HM165]
 gi|313670190|gb|ADR73286.1| recombination protein A [Bradyrhizobium sp. HO166]
 gi|313670192|gb|ADR73287.1| recombination protein A [Bradyrhizobium sp. HO167]
 gi|313670196|gb|ADR73289.1| recombination protein A [Bradyrhizobium sp. HO169]
 gi|313670198|gb|ADR73290.1| recombination protein A [Bradyrhizobium sp. HO170]
 gi|313670200|gb|ADR73291.1| recombination protein A [Bradyrhizobium sp. HO171]
 gi|313670202|gb|ADR73292.1| recombination protein A [Bradyrhizobium sp. HO172]
 gi|313670204|gb|ADR73293.1| recombination protein A [Bradyrhizobium sp. HO173]
 gi|313670206|gb|ADR73294.1| recombination protein A [Bradyrhizobium sp. HO174]
 gi|313670210|gb|ADR73296.1| recombination protein A [Bradyrhizobium sp. HO176]
 gi|313670212|gb|ADR73297.1| recombination protein A [Bradyrhizobium sp. HO177]
 gi|313670214|gb|ADR73298.1| recombination protein A [Bradyrhizobium sp. HO178]
 gi|313670216|gb|ADR73299.1| recombination protein A [Bradyrhizobium sp. HO179]
 gi|313670218|gb|ADR73300.1| recombination protein A [Bradyrhizobium sp. HO180]
 gi|313670220|gb|ADR73301.1| recombination protein A [Bradyrhizobium sp. HO181]
 gi|313670224|gb|ADR73303.1| recombination protein A [Bradyrhizobium sp. HO183]
 gi|313670226|gb|ADR73304.1| recombination protein A [Bradyrhizobium sp. HO184]
 gi|313670228|gb|ADR73305.1| recombination protein A [Bradyrhizobium sp. HO185]
 gi|313670232|gb|ADR73307.1| recombination protein A [Bradyrhizobium sp. HO187]
 gi|313670234|gb|ADR73308.1| recombination protein A [Bradyrhizobium sp. HO188]
 gi|313670236|gb|ADR73309.1| recombination protein A [Bradyrhizobium sp. HO189]
 gi|313670238|gb|ADR73310.1| recombination protein A [Bradyrhizobium sp. HO190]
 gi|313670240|gb|ADR73311.1| recombination protein A [Bradyrhizobium sp. HO191]
 gi|313670242|gb|ADR73312.1| recombination protein A [Bradyrhizobium sp. HO192]
 gi|313670244|gb|ADR73313.1| recombination protein A [Bradyrhizobium sp. HO193]
 gi|313670246|gb|ADR73314.1| recombination protein A [Bradyrhizobium sp. HO194]
 gi|313670248|gb|ADR73315.1| recombination protein A [Bradyrhizobium sp. HO195]
 gi|313670250|gb|ADR73316.1| recombination protein A [Bradyrhizobium sp. HO196]
 gi|313670252|gb|ADR73317.1| recombination protein A [Bradyrhizobium sp. HO197]
 gi|313670258|gb|ADR73320.1| recombination protein A [Bradyrhizobium sp. HO200]
 gi|313670260|gb|ADR73321.1| recombination protein A [Bradyrhizobium sp. HO201]
 gi|313670262|gb|ADR73322.1| recombination protein A [Bradyrhizobium sp. HO202]
 gi|313670264|gb|ADR73323.1| recombination protein A [Bradyrhizobium sp. HO203]
 gi|313670266|gb|ADR73324.1| recombination protein A [Bradyrhizobium sp. HO204]
 gi|313670270|gb|ADR73326.1| recombination protein A [Bradyrhizobium sp. HO206]
 gi|313670272|gb|ADR73327.1| recombination protein A [Bradyrhizobium sp. HO207]
 gi|313670274|gb|ADR73328.1| recombination protein A [Bradyrhizobium sp. HO208]
 gi|313670276|gb|ADR73329.1| recombination protein A [Bradyrhizobium sp. HO209]
 gi|313670278|gb|ADR73330.1| recombination protein A [Bradyrhizobium sp. HO210]
 gi|313670280|gb|ADR73331.1| recombination protein A [Bradyrhizobium sp. HO211]
 gi|313670282|gb|ADR73332.1| recombination protein A [Bradyrhizobium sp. HO212]
 gi|313670284|gb|ADR73333.1| recombination protein A [Bradyrhizobium sp. HO213]
 gi|313670286|gb|ADR73334.1| recombination protein A [Bradyrhizobium sp. HO214]
 gi|313670290|gb|ADR73336.1| recombination protein A [Bradyrhizobium sp. HO216]
 gi|313670292|gb|ADR73337.1| recombination protein A [Bradyrhizobium sp. HO217]
 gi|313670294|gb|ADR73338.1| recombination protein A [Bradyrhizobium sp. HO218]
 gi|313670298|gb|ADR73340.1| recombination protein A [Bradyrhizobium sp. HO220]
 gi|313670304|gb|ADR73343.1| recombination protein A [Bradyrhizobium japonicum]
 gi|313670306|gb|ADR73344.1| recombination protein A [Bradyrhizobium japonicum]
 gi|313670308|gb|ADR73345.1| recombination protein A [Bradyrhizobium japonicum]
 gi|313670310|gb|ADR73346.1| recombination protein A [Bradyrhizobium japonicum]
 gi|313670316|gb|ADR73349.1| recombination protein A [Bradyrhizobium japonicum]
 gi|313670318|gb|ADR73350.1| recombination protein A [Bradyrhizobium japonicum]
 gi|313670320|gb|ADR73351.1| recombination protein A [Bradyrhizobium japonicum]
          Length = 154

 Score =  251 bits (641), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 117/146 (80%), Positives = 136/146 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 9   VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 68

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 69  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 128

Query: 165 GDMGESLPGMQARLMSQALRKLTSSI 190
           G+MG++LPG+QARLMSQALRKLT+SI
Sbjct: 129 GEMGDALPGLQARLMSQALRKLTASI 154


>gi|269214649|ref|ZP_06158715.1| protein RecA [Neisseria lactamica ATCC 23970]
 gi|269209310|gb|EEZ75765.1| protein RecA [Neisseria lactamica ATCC 23970]
          Length = 196

 Score =  251 bits (641), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 128/183 (69%), Positives = 154/183 (84%), Gaps = 3/183 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           DKSKAL AAL+QI++ +GKGAIM++ GSQ    E +EV+S+GSLGLD+ALG+GG P+GRI
Sbjct: 4   DKSKALAAALAQIEKSFGKGAIMKMDGSQQE--ENLEVISTGSLGLDLALGVGGLPRGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEI+GPESSGKTTL L  +AQ QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDT
Sbjct: 62  VEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSG +D++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  
Sbjct: 122 GEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGH 181

Query: 190 ISR 192
           I +
Sbjct: 182 IKK 184


>gi|189016838|gb|ACD70386.1| recombinase protein A [Mesorhizobium sp. CCBAU 65333]
          Length = 157

 Score =  251 bits (641), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 120/154 (77%), Positives = 140/154 (90%), Gaps = 1/154 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 5   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 64  IEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEI
Sbjct: 124 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEI 157


>gi|199595030|gb|ACH90979.1| RecA [Stenotrophomonas maltophilia]
 gi|199595068|gb|ACH90998.1| RecA [Stenotrophomonas maltophilia]
 gi|199595074|gb|ACH91001.1| RecA [Stenotrophomonas maltophilia]
 gi|199595076|gb|ACH91002.1| RecA [Stenotrophomonas maltophilia]
 gi|199595078|gb|ACH91003.1| RecA [Stenotrophomonas maltophilia]
 gi|301318396|gb|ADK67113.1| RecA protein [Stenotrophomonas rhizophila]
 gi|301318418|gb|ADK67124.1| RecA protein [Stenotrophomonas maltophilia]
 gi|301318430|gb|ADK67130.1| RecA protein [Stenotrophomonas maltophilia]
 gi|301318432|gb|ADK67131.1| RecA protein [Stenotrophomonas maltophilia]
          Length = 182

 Score =  251 bits (641), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 135/182 (74%), Positives = 156/182 (85%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +EV+ +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EAVEVIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKKGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRS +VDI+V+DSVAALTP+AE
Sbjct: 61  AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSSSVDIVVVDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS  ++VFINQ+R KIGVM    SPE TTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRHKIGVMMPGQSPEVTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|25991791|gb|AAN76936.1| RecA [Burkholderia cenocepacia]
          Length = 169

 Score =  251 bits (641), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 124/170 (72%), Positives = 148/170 (87%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG++G+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGELGDSLPGLQARLMSQALR 169


>gi|38602343|emb|CAD58027.1| recombinase A [Acetobacter tropicalis]
          Length = 152

 Score =  251 bits (640), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 119/152 (78%), Positives = 138/152 (90%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGA+D++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT S++RS  +++F+
Sbjct: 1   VRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGSVARSNTMMIFL 60

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+R+KIGVMFG+PETTTGGNALKFY+SVRLDIRRVGSIKDKD   GNQTRVKVVKNKMA
Sbjct: 61  NQIRLKIGVMFGNPETTTGGNALKFYASVRLDIRRVGSIKDKDEGWGNQTRVKVVKNKMA 120

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
            PF+QVEFDIMYGEGIS  GELIDLGVKA +V
Sbjct: 121 PPFRQVEFDIMYGEGISKVGELIDLGVKAGVV 152


>gi|270266145|gb|ACZ65005.1| recombinase A [Mesorhizobium sp. CCNWXJ40-4]
 gi|270266147|gb|ACZ65006.1| recombinase A [Mesorhizobium sp. CCNWXJ32-3]
          Length = 150

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 120/151 (79%), Positives = 138/151 (91%), Gaps = 1/151 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG+   I E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+
Sbjct: 1   KGSIMRLGANEKIVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTV 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGAVD+
Sbjct: 60  AEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
           +V+DSVAALTPRAEIEG+MG+SLPG+QARLM
Sbjct: 120 LVVDSVAALTPRAEIEGEMGDSLPGLQARLM 150


>gi|291246088|gb|ADD85172.1| RecA [Borrelia duttonii]
          Length = 231

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 119/220 (54%), Positives = 171/220 (77%), Gaps = 2/220 (0%)

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GV++  L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAALTP+AEI+G+MG++  G+Q
Sbjct: 1   GVNINELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALTPQAEIDGEMGDTQIGLQ 60

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           ARLMS+ALRK+T+ +S+S   ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R+
Sbjct: 61  ARLMSKALRKITAILSKSNTCIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRK 120

Query: 236 VGSI--KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVD 293
           V  +     D++ GN+ RVKVVKNK+A PF++ E  + +G+GIS    ++D  +K ++V 
Sbjct: 121 VEQVIGSSSDNVIGNKIRVKVVKNKVAPPFRKAELIVYFGKGISREASILDAAIKYNLVQ 180

Query: 294 KSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           KSG+W++     LGQGREN   +L +   +A  +E+ LR+
Sbjct: 181 KSGSWYAMGDDNLGQGRENVIEYLFKEKALANELENKLRK 220


>gi|25991821|gb|AAN76951.1| RecA [Burkholderia cenocepacia]
          Length = 169

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 124/170 (72%), Positives = 147/170 (86%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL  AL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAPALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|217037961|gb|ACJ76443.1| RecA [Aliivibrio fischeri]
 gi|217037963|gb|ACJ76444.1| RecA [Aliivibrio fischeri]
 gi|217037965|gb|ACJ76445.1| RecA [Aliivibrio fischeri]
 gi|217037967|gb|ACJ76446.1| RecA [Aliivibrio fischeri]
 gi|217037969|gb|ACJ76447.1| RecA [Aliivibrio fischeri]
 gi|217037971|gb|ACJ76448.1| RecA [Aliivibrio fischeri]
 gi|217037973|gb|ACJ76449.1| RecA [Aliivibrio fischeri]
 gi|217037975|gb|ACJ76450.1| RecA [Aliivibrio fischeri]
 gi|217037977|gb|ACJ76451.1| RecA [Aliivibrio fischeri]
 gi|217037979|gb|ACJ76452.1| RecA [Aliivibrio fischeri]
 gi|217037981|gb|ACJ76453.1| RecA [Aliivibrio fischeri]
 gi|217037983|gb|ACJ76454.1| RecA [Aliivibrio fischeri]
 gi|217037985|gb|ACJ76455.1| RecA [Aliivibrio fischeri]
 gi|217037987|gb|ACJ76456.1| RecA [Aliivibrio fischeri]
 gi|217037989|gb|ACJ76457.1| RecA [Aliivibrio fischeri]
 gi|217037991|gb|ACJ76458.1| RecA [Aliivibrio fischeri]
 gi|217037993|gb|ACJ76459.1| RecA [Aliivibrio fischeri]
 gi|217037995|gb|ACJ76460.1| RecA [Aliivibrio fischeri]
 gi|217037997|gb|ACJ76461.1| RecA [Aliivibrio fischeri]
 gi|217037999|gb|ACJ76462.1| RecA [Aliivibrio fischeri]
 gi|217038001|gb|ACJ76463.1| RecA [Aliivibrio fischeri]
 gi|217038003|gb|ACJ76464.1| RecA [Aliivibrio fischeri]
 gi|217038005|gb|ACJ76465.1| RecA [Aliivibrio fischeri]
 gi|217038007|gb|ACJ76466.1| RecA [Aliivibrio fischeri]
          Length = 177

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 120/179 (67%), Positives = 150/179 (83%), Gaps = 2/179 (1%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  I
Sbjct: 1   KGSIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 MVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKI 177


>gi|33087819|gb|AAP93040.1| recombination protein A [Yersinia frederiksenii]
          Length = 181

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 120/183 (65%), Positives = 150/183 (81%), Gaps = 2/183 (1%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 58

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L 
Sbjct: 59  TLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALT 118

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FIN
Sbjct: 119 RSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFIN 178

Query: 202 QMR 204
           Q+R
Sbjct: 179 QIR 181


>gi|313670314|gb|ADR73348.1| recombination protein A [Bradyrhizobium pachyrhizi]
          Length = 154

 Score =  250 bits (638), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 117/146 (80%), Positives = 135/146 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +SSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE
Sbjct: 9   VETISSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 68

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E
Sbjct: 69  HALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVRSGAVDVLVIDSVAALVPKAELE 128

Query: 165 GDMGESLPGMQARLMSQALRKLTSSI 190
           G+MG++LPG+QARLMSQALRKLT+SI
Sbjct: 129 GEMGDALPGLQARLMSQALRKLTASI 154


>gi|158905831|gb|ABW82565.1| RecA [Bradyrhizobiaceae bacterium NS1]
          Length = 148

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 117/148 (79%), Positives = 137/148 (92%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           EVVSSGSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALH +A++QK GG CAFVDAEH
Sbjct: 1   EVVSSGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHCVAEAQKKGGICAFVDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGV++  LLISQPD GEQALEI D LVRSGAVD+++IDSVAAL PRAE+EG
Sbjct: 61  ALDPVYARKLGVNVDELLISQPDHGEQALEIADTLVRSGAVDVLIIDSVAALVPRAELEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRS 193
           +MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKS 148


>gi|25991815|gb|AAN76948.1| RecA [Burkholderia cepacia]
 gi|25991837|gb|AAN76959.1| RecA [Burkholderia cepacia]
          Length = 169

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 124/170 (72%), Positives = 147/170 (86%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G      E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-AEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|242117656|dbj|BAH80100.1| recombinase A [Aeromonas salmonicida subsp. salmonicida]
          Length = 153

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 115/153 (75%), Positives = 137/153 (89%)

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA++QK G  CAF+DAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS A
Sbjct: 1   QVIAEAQKKGKVCAFIDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNA 60

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           VD+I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RM
Sbjct: 61  VDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRM 120

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           KIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+
Sbjct: 121 KIGVMFGSPETTTGGNALKFYASVRLDIRRIGA 153


>gi|325651017|emb|CBY89330.1| RecA protein [Bradyrhizobium japonicum]
          Length = 158

 Score =  249 bits (637), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 118/159 (74%), Positives = 141/159 (88%), Gaps = 1/159 (0%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           R +GKG++M+LG      + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLA
Sbjct: 1   RSFGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLA 59

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSG
Sbjct: 60  LHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSG 119

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           AVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQAL
Sbjct: 120 AVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQAL 158


>gi|213516924|gb|ACJ49900.1| recombinase A [Erwinia chrysanthemi]
 gi|213516926|gb|ACJ49901.1| recombinase A [Dickeya paradisiaca]
 gi|213516932|gb|ACJ49904.1| recombinase A [Erwinia chrysanthemi]
 gi|213516944|gb|ACJ49910.1| recombinase A [Dickeya zeae]
 gi|213516946|gb|ACJ49911.1| recombinase A [Dickeya zeae]
 gi|213516950|gb|ACJ49913.1| recombinase A [Erwinia chrysanthemi]
 gi|213516952|gb|ACJ49914.1| recombinase A [Erwinia chrysanthemi]
 gi|213516954|gb|ACJ49915.1| recombinase A [Erwinia chrysanthemi]
 gi|213516956|gb|ACJ49916.1| recombinase A [Dickeya paradisiaca]
 gi|213516958|gb|ACJ49917.1| recombinase A [Dickeya zeae]
 gi|213516960|gb|ACJ49918.1| recombinase A [Dickeya zeae]
 gi|213516962|gb|ACJ49919.1| recombinase A [Dickeya zeae]
 gi|213516966|gb|ACJ49921.1| recombinase A [Dickeya zeae]
 gi|213516968|gb|ACJ49922.1| recombinase A [Erwinia chrysanthemi]
 gi|213516970|gb|ACJ49923.1| recombinase A [Dickeya zeae]
 gi|213516974|gb|ACJ49925.1| recombinase A [Dickeya zeae]
 gi|213516980|gb|ACJ49928.1| recombinase A [Dickeya zeae]
 gi|213516984|gb|ACJ49930.1| recombinase A [Dickeya zeae]
 gi|213517020|gb|ACJ49948.1| recombinase A [Dickeya zeae]
 gi|213517026|gb|ACJ49951.1| recombinase A [Erwinia chrysanthemi]
 gi|213517042|gb|ACJ49959.1| recombinase A [Dickeya sp. NCPPB 569]
 gi|213517046|gb|ACJ49961.1| recombinase A [Erwinia chrysanthemi]
 gi|213517050|gb|ACJ49963.1| recombinase A [Dickeya zeae]
 gi|213517052|gb|ACJ49964.1| recombinase A [Dickeya zeae]
 gi|213517056|gb|ACJ49966.1| recombinase A [Dickeya zeae]
 gi|213517062|gb|ACJ49969.1| recombinase A [Erwinia chrysanthemi]
 gi|213517064|gb|ACJ49970.1| recombinase A [Erwinia chrysanthemi]
 gi|213517070|gb|ACJ49973.1| recombinase A [Dickeya zeae]
 gi|213517072|gb|ACJ49974.1| recombinase A [Dickeya zeae]
 gi|213517074|gb|ACJ49975.1| recombinase A [Dickeya zeae]
 gi|213517078|gb|ACJ49977.1| recombinase A [Dickeya zeae]
 gi|213517084|gb|ACJ49980.1| recombinase A [Dickeya zeae]
 gi|213517090|gb|ACJ49983.1| recombinase A [Dickeya zeae]
 gi|213517110|gb|ACJ49993.1| recombinase A [Erwinia chrysanthemi]
 gi|213517114|gb|ACJ49995.1| recombinase A [Dickeya zeae]
 gi|213517120|gb|ACJ49998.1| recombinase A [Dickeya zeae]
 gi|213517150|gb|ACJ50013.1| recombinase A [Erwinia chrysanthemi]
 gi|213517158|gb|ACJ50017.1| recombinase A [Dickeya zeae]
 gi|213517160|gb|ACJ50018.1| recombinase A [Dickeya zeae]
 gi|213517162|gb|ACJ50019.1| recombinase A [Erwinia chrysanthemi]
 gi|213517164|gb|ACJ50020.1| recombinase A [Dickeya zeae]
 gi|213517168|gb|ACJ50022.1| recombinase A [Dickeya zeae]
 gi|213517170|gb|ACJ50023.1| recombinase A [Dickeya zeae]
 gi|213517172|gb|ACJ50024.1| recombinase A [Dickeya zeae]
 gi|213517174|gb|ACJ50025.1| recombinase A [Dickeya zeae]
 gi|213517182|gb|ACJ50029.1| recombinase A [Dickeya zeae]
 gi|213517188|gb|ACJ50032.1| recombinase A [Dickeya zeae]
 gi|213517192|gb|ACJ50034.1| recombinase A [Erwinia chrysanthemi]
 gi|213517206|gb|ACJ50041.1| recombinase A [Dickeya zeae]
 gi|213517210|gb|ACJ50043.1| recombinase A [Dickeya zeae]
 gi|213517212|gb|ACJ50044.1| recombinase A [Dickeya zeae]
 gi|213517220|gb|ACJ50048.1| recombinase A [Erwinia chrysanthemi]
 gi|213517222|gb|ACJ50049.1| recombinase A [Dickeya zeae]
 gi|213517226|gb|ACJ50051.1| recombinase A [Dickeya zeae]
 gi|213517228|gb|ACJ50052.1| recombinase A [Dickeya zeae]
 gi|213517230|gb|ACJ50053.1| recombinase A [Erwinia chrysanthemi]
 gi|213517246|gb|ACJ50061.1| recombinase A [Dickeya zeae]
 gi|213517262|gb|ACJ50069.1| recombinase A [Erwinia chrysanthemi]
 gi|213517266|gb|ACJ50071.1| recombinase A [Dickeya zeae]
 gi|213517270|gb|ACJ50073.1| recombinase A [Dickeya zeae]
 gi|318065343|gb|ADV36767.1| recombinase A [Dickeya zeae]
 gi|318065345|gb|ADV36768.1| recombinase A [Dickeya zeae]
          Length = 160

 Score =  249 bits (637), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 116/160 (72%), Positives = 138/160 (86%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ N
Sbjct: 1   GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDN 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQ
Sbjct: 61  LLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
           A+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGN
Sbjct: 121 AMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGN 160


>gi|313670090|gb|ADR73236.1| recombination protein A [Bradyrhizobium sp. HM116]
 gi|313670120|gb|ADR73251.1| recombination protein A [Bradyrhizobium sp. HM131]
 gi|313670138|gb|ADR73260.1| recombination protein A [Bradyrhizobium sp. HM140]
 gi|313670194|gb|ADR73288.1| recombination protein A [Bradyrhizobium sp. HO168]
 gi|313670208|gb|ADR73295.1| recombination protein A [Bradyrhizobium sp. HO175]
 gi|313670222|gb|ADR73302.1| recombination protein A [Bradyrhizobium sp. HO182]
 gi|313670230|gb|ADR73306.1| recombination protein A [Bradyrhizobium sp. HO186]
 gi|313670254|gb|ADR73318.1| recombination protein A [Bradyrhizobium sp. HO198]
 gi|313670256|gb|ADR73319.1| recombination protein A [Bradyrhizobium sp. HO199]
 gi|313670268|gb|ADR73325.1| recombination protein A [Bradyrhizobium sp. HO205]
 gi|313670288|gb|ADR73335.1| recombination protein A [Bradyrhizobium sp. HO215]
 gi|313670296|gb|ADR73339.1| recombination protein A [Bradyrhizobium sp. HO219]
 gi|313670300|gb|ADR73341.1| recombination protein A [Bradyrhizobium sp. 61A101]
          Length = 154

 Score =  249 bits (637), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 116/146 (79%), Positives = 135/146 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE
Sbjct: 9   VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 68

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 69  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 128

Query: 165 GDMGESLPGMQARLMSQALRKLTSSI 190
           G+MG++LPG+QARLMSQALRKLT+SI
Sbjct: 129 GEMGDALPGLQARLMSQALRKLTASI 154


>gi|213517248|gb|ACJ50062.1| recombinase A [Pantoea agglomerans]
          Length = 160

 Score =  249 bits (637), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 115/160 (71%), Positives = 138/160 (86%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ N
Sbjct: 1   GGLPMGRIVEIYGPESSGKTTLTLQVIASAQRKGKTCAFIDAEHALDPVYAKKLGVDIDN 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQ
Sbjct: 61  LLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
           A+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGN
Sbjct: 121 AMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGN 160


>gi|25991865|gb|AAN76973.1| RecA [Burkholderia cenocepacia]
 gi|25991867|gb|AAN76974.1| RecA [Burkholderia cenocepacia]
          Length = 169

 Score =  249 bits (637), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 124/170 (72%), Positives = 147/170 (86%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL  AL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAVALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|213516918|gb|ACJ49897.1| recombinase A [Dickeya dadantii]
 gi|213516920|gb|ACJ49898.1| recombinase A [Dickeya dieffenbachiae]
 gi|213516928|gb|ACJ49902.1| recombinase A [Dickeya dadantii]
 gi|213516930|gb|ACJ49903.1| recombinase A [Dickeya dianthicola]
 gi|213516934|gb|ACJ49905.1| recombinase A [Dickeya dianthicola]
 gi|213516938|gb|ACJ49907.1| recombinase A [Dickeya sp. 20714261]
 gi|213516942|gb|ACJ49909.1| recombinase A [Dickeya dianthicola]
 gi|213516948|gb|ACJ49912.1| recombinase A [Dickeya dianthicola]
 gi|213516964|gb|ACJ49920.1| recombinase A [Dickeya dadantii]
 gi|213516972|gb|ACJ49924.1| recombinase A [Dickeya dianthicola]
 gi|213516976|gb|ACJ49926.1| recombinase A [Dickeya dadantii]
 gi|213516978|gb|ACJ49927.1| recombinase A [Dickeya dieffenbachiae]
 gi|213516982|gb|ACJ49929.1| recombinase A [Dickeya sp. NCPPB 3274]
 gi|213516986|gb|ACJ49931.1| recombinase A [Dickeya dadantii]
 gi|213516988|gb|ACJ49932.1| recombinase A [Dickeya dieffenbachiae]
 gi|213516990|gb|ACJ49933.1| recombinase A [Dickeya dadantii]
 gi|213516992|gb|ACJ49934.1| recombinase A [Dickeya dadantii]
 gi|213516994|gb|ACJ49935.1| recombinase A [Dickeya dadantii]
 gi|213517000|gb|ACJ49938.1| recombinase A [Dickeya dianthicola]
 gi|213517022|gb|ACJ49949.1| recombinase A [Dickeya dadantii]
 gi|213517024|gb|ACJ49950.1| recombinase A [Dickeya dianthicola]
 gi|213517028|gb|ACJ49952.1| recombinase A [Dickeya dadantii]
 gi|213517030|gb|ACJ49953.1| recombinase A [Dickeya dadantii]
 gi|213517032|gb|ACJ49954.1| recombinase A [Dickeya sp. PD 813]
 gi|213517034|gb|ACJ49955.1| recombinase A [Dickeya dianthicola]
 gi|213517036|gb|ACJ49956.1| recombinase A [Dickeya dianthicola]
 gi|213517038|gb|ACJ49957.1| recombinase A [Dickeya dianthicola]
 gi|213517044|gb|ACJ49960.1| recombinase A [Dickeya dianthicola]
 gi|213517048|gb|ACJ49962.1| recombinase A [Dickeya dianthicola]
 gi|213517054|gb|ACJ49965.1| recombinase A [Dickeya dieffenbachiae]
 gi|213517058|gb|ACJ49967.1| recombinase A [Dickeya dianthicola]
 gi|213517060|gb|ACJ49968.1| recombinase A [Dickeya dieffenbachiae]
 gi|213517066|gb|ACJ49971.1| recombinase A [Dickeya dieffenbachiae]
 gi|213517068|gb|ACJ49972.1| recombinase A [Dickeya dianthicola]
 gi|213517076|gb|ACJ49976.1| recombinase A [Dickeya dadantii]
 gi|213517080|gb|ACJ49978.1| recombinase A [Dickeya dianthicola]
 gi|213517082|gb|ACJ49979.1| recombinase A [Dickeya sp. NCPPB 3211]
 gi|213517086|gb|ACJ49981.1| recombinase A [Dickeya dianthicola]
 gi|213517092|gb|ACJ49984.1| recombinase A [Dickeya dianthicola]
 gi|213517094|gb|ACJ49985.1| recombinase A [Dickeya dianthicola]
 gi|213517096|gb|ACJ49986.1| recombinase A [Dickeya dianthicola]
 gi|213517098|gb|ACJ49987.1| recombinase A [Dickeya dianthicola]
 gi|213517100|gb|ACJ49988.1| recombinase A [Dickeya dianthicola]
 gi|213517102|gb|ACJ49989.1| recombinase A [Dickeya dianthicola]
 gi|213517104|gb|ACJ49990.1| recombinase A [Dickeya dianthicola]
 gi|213517106|gb|ACJ49991.1| recombinase A [Dickeya dadantii]
 gi|213517112|gb|ACJ49994.1| recombinase A [Dickeya dianthicola]
 gi|213517116|gb|ACJ49996.1| recombinase A [Dickeya dianthicola]
 gi|213517118|gb|ACJ49997.1| recombinase A [Dickeya dianthicola]
 gi|213517122|gb|ACJ49999.1| recombinase A [Dickeya sp. PD 1750]
 gi|213517124|gb|ACJ50000.1| recombinase A [Dickeya dadantii]
 gi|213517126|gb|ACJ50001.1| recombinase A [Dickeya dadantii]
 gi|213517128|gb|ACJ50002.1| recombinase A [Dickeya dadantii]
 gi|213517130|gb|ACJ50003.1| recombinase A [Dickeya dianthicola]
 gi|213517132|gb|ACJ50004.1| recombinase A [Dickeya dianthicola]
 gi|213517142|gb|ACJ50009.1| recombinase A [Dickeya dianthicola]
 gi|213517144|gb|ACJ50010.1| recombinase A [Dickeya dianthicola]
 gi|213517146|gb|ACJ50011.1| recombinase A [Dickeya dianthicola]
 gi|213517148|gb|ACJ50012.1| recombinase A [Dickeya dianthicola]
 gi|213517152|gb|ACJ50014.1| recombinase A [Dickeya dianthicola]
 gi|213517154|gb|ACJ50015.1| recombinase A [Dickeya dianthicola]
 gi|213517156|gb|ACJ50016.1| recombinase A [Dickeya dianthicola]
 gi|213517176|gb|ACJ50026.1| recombinase A [Dickeya dianthicola]
 gi|213517178|gb|ACJ50027.1| recombinase A [Dickeya dianthicola]
 gi|213517180|gb|ACJ50028.1| recombinase A [Dickeya dadantii]
 gi|213517184|gb|ACJ50030.1| recombinase A [Dickeya sp. NCPPB 2915]
 gi|213517190|gb|ACJ50033.1| recombinase A [Dickeya dadantii]
 gi|213517194|gb|ACJ50035.1| recombinase A [Dickeya dianthicola]
 gi|213517196|gb|ACJ50036.1| recombinase A [Dickeya dianthicola]
 gi|213517198|gb|ACJ50037.1| recombinase A [Dickeya dianthicola]
 gi|213517200|gb|ACJ50038.1| recombinase A [Dickeya dieffenbachiae]
 gi|213517202|gb|ACJ50039.1| recombinase A [Dickeya dieffenbachiae]
 gi|213517204|gb|ACJ50040.1| recombinase A [Dickeya dieffenbachiae]
 gi|213517214|gb|ACJ50045.1| recombinase A [Dickeya dieffenbachiae]
 gi|213517216|gb|ACJ50046.1| recombinase A [Dickeya dieffenbachiae]
 gi|213517218|gb|ACJ50047.1| recombinase A [Dickeya dianthicola]
 gi|213517224|gb|ACJ50050.1| recombinase A [Dickeya dadantii]
 gi|213517232|gb|ACJ50054.1| recombinase A [Dickeya sp. NCPPB 2929]
 gi|213517234|gb|ACJ50055.1| recombinase A [Dickeya dadantii]
 gi|213517236|gb|ACJ50056.1| recombinase A [Dickeya dadantii]
 gi|213517238|gb|ACJ50057.1| recombinase A [Dickeya dadantii]
 gi|213517240|gb|ACJ50058.1| recombinase A [Dickeya dadantii]
 gi|213517242|gb|ACJ50059.1| recombinase A [Dickeya dianthicola]
 gi|213517244|gb|ACJ50060.1| recombinase A [Dickeya dadantii]
 gi|213517250|gb|ACJ50063.1| recombinase A [Dickeya dianthicola]
 gi|213517252|gb|ACJ50064.1| recombinase A [Dickeya dianthicola]
 gi|213517254|gb|ACJ50065.1| recombinase A [Dickeya dianthicola]
 gi|213517256|gb|ACJ50066.1| recombinase A [Dickeya dianthicola]
 gi|213517258|gb|ACJ50067.1| recombinase A [Dickeya dianthicola]
 gi|213517260|gb|ACJ50068.1| recombinase A [Dickeya dadantii]
 gi|213517264|gb|ACJ50070.1| recombinase A [Dickeya dianthicola]
 gi|213517268|gb|ACJ50072.1| recombinase A [Dickeya dianthicola]
 gi|213517272|gb|ACJ50074.1| recombinase A [Dickeya dianthicola]
 gi|213517274|gb|ACJ50075.1| recombinase A [Dickeya dianthicola]
 gi|213517276|gb|ACJ50076.1| recombinase A [Dickeya dianthicola]
 gi|213517278|gb|ACJ50077.1| recombinase A [Dickeya dianthicola]
 gi|213517280|gb|ACJ50078.1| recombinase A [Dickeya dianthicola]
 gi|213517282|gb|ACJ50079.1| recombinase A [Dickeya dianthicola]
 gi|213517284|gb|ACJ50080.1| recombinase A [Dickeya dieffenbachiae]
 gi|213517286|gb|ACJ50081.1| recombinase A [Dickeya dadantii]
 gi|213517288|gb|ACJ50082.1| recombinase A [Dickeya dadantii]
 gi|213517290|gb|ACJ50083.1| recombinase A [Dickeya dianthicola]
 gi|213517292|gb|ACJ50084.1| recombinase A [Dickeya dadantii]
 gi|213517294|gb|ACJ50085.1| recombinase A [Dickeya sp. NCPPB 3306]
 gi|213517296|gb|ACJ50086.1| recombinase A [Dickeya dianthicola]
 gi|213517298|gb|ACJ50087.1| recombinase A [Dickeya dianthicola]
 gi|213517300|gb|ACJ50088.1| recombinase A [Dickeya dadantii]
 gi|213517302|gb|ACJ50089.1| recombinase A [Dickeya dadantii]
          Length = 160

 Score =  249 bits (636), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 116/160 (72%), Positives = 138/160 (86%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ N
Sbjct: 1   GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRGGKTCAFIDAEHALDPIYAKKLGVDIDN 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQ
Sbjct: 61  LLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
           A+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGN
Sbjct: 121 AMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGN 160


>gi|213950710|gb|ACJ54600.1| recombination protein A [Sinorhizobium fredii]
          Length = 149

 Score =  249 bits (636), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 122/149 (81%), Positives = 137/149 (91%), Gaps = 1/149 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL 
Sbjct: 2   FGKGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQ 60

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+
Sbjct: 61  TIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAI 120

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           D++V+DSVAAL PRAEIEG+MG+SLPGMQ
Sbjct: 121 DVLVVDSVAALVPRAEIEGEMGDSLPGMQ 149


>gi|308233965|ref|ZP_07664702.1| RecA protein [Atopobium vaginae DSM 15829]
          Length = 242

 Score =  249 bits (636), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 142/223 (63%), Positives = 178/223 (79%)

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           +GVD+  +LISQPDTGEQALEI DMLVRSGA+D++V+DSVAAL PRAEIEG++GE+  G+
Sbjct: 1   IGVDIDEVLISQPDTGEQALEICDMLVRSGAIDVVVVDSVAALVPRAEIEGEIGETTVGL 60

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
           QARLMSQALRKL  S+S+SK   +FINQ+R KIGVMFG+PETT GG ALKF+SSVRLDIR
Sbjct: 61  QARLMSQALRKLAGSLSKSKTTCIFINQLREKIGVMFGNPETTPGGRALKFFSSVRLDIR 120

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK 294
           RV ++K  + + GN+ RVKVVKNK+A PFKQ EFDIMYG GIS  G ++D+  +  IV K
Sbjct: 121 RVETLKKNNDMIGNRVRVKVVKNKVAPPFKQAEFDIMYGTGISKEGTVLDMAAELGIVQK 180

Query: 295 SGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           SGAWF++  QRLGQGRE  K FL +N ++ E + + ++   GL
Sbjct: 181 SGAWFNYGEQRLGQGREAVKEFLVQNPDLLEELTNKVKVACGL 223


>gi|25991777|gb|AAN76929.1| RecA [Burkholderia cepacia]
          Length = 169

 Score =  249 bits (636), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 123/170 (72%), Positives = 147/170 (86%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           A+ AAL+ I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   AVAAALAHIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|325512793|gb|ADZ23585.1| RecA [Bradyrhizobium liaoningense]
          Length = 153

 Score =  249 bits (635), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 118/144 (81%), Positives = 134/144 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 10  IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 69

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E
Sbjct: 70  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELE 129

Query: 165 GDMGESLPGMQARLMSQALRKLTS 188
           G+MG++LPG+QARLMSQALRKLT+
Sbjct: 130 GEMGDALPGLQARLMSQALRKLTA 153


>gi|213516936|gb|ACJ49906.1| recombinase A [Dickeya sp. 20711883]
 gi|213516940|gb|ACJ49908.1| recombinase A [Dickeya sp. G-121]
 gi|213516996|gb|ACJ49936.1| recombinase A [Dickeya sp. 20710970]
 gi|213516998|gb|ACJ49937.1| recombinase A [Dickeya sp. Ech1991]
 gi|213517002|gb|ACJ49939.1| recombinase A [Dickeya sp. G-115]
 gi|213517004|gb|ACJ49940.1| recombinase A [Dickeya sp. G-118]
 gi|213517006|gb|ACJ49941.1| recombinase A [Dickeya sp. G-120]
 gi|213517008|gb|ACJ49942.1| recombinase A [Dickeya sp. G-122]
 gi|213517010|gb|ACJ49943.1| recombinase A [Dickeya sp. G-169]
 gi|213517012|gb|ACJ49944.1| recombinase A [Dickeya sp. G-87]
 gi|213517014|gb|ACJ49945.1| recombinase A [Dickeya sp. Imp1]
 gi|213517016|gb|ACJ49946.1| recombinase A [Dickeya sp. Imp23.1]
 gi|213517018|gb|ACJ49947.1| recombinase A [Dickeya sp. Imp24]
 gi|213517134|gb|ACJ50005.1| recombinase A [Dickeya sp. Pc26.4]
 gi|213517136|gb|ACJ50006.1| recombinase A [Dickeya sp. Pc3]
 gi|213517138|gb|ACJ50007.1| recombinase A [Dickeya sp. Pc36.1]
 gi|213517140|gb|ACJ50008.1| recombinase A [Dickeya sp. Pc41.1]
          Length = 160

 Score =  249 bits (635), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 115/160 (71%), Positives = 138/160 (86%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ N
Sbjct: 1   GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRGGKTCAFIDAEHALDPVYAKKLGVDIDN 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQ
Sbjct: 61  LLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
           A+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGN
Sbjct: 121 AMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGN 160


>gi|270266149|gb|ACZ65007.1| recombinase A [Mesorhizobium sp. CCNWXJ16-1]
          Length = 150

 Score =  249 bits (635), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 119/151 (78%), Positives = 137/151 (90%), Gaps = 1/151 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG+   I E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+
Sbjct: 1   KGSIMRLGANEKIVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTV 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGAVD+
Sbjct: 60  AEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
           +V+DSVAALTPRAEIEG+MG+SLP +QARLM
Sbjct: 120 LVVDSVAALTPRAEIEGEMGDSLPALQARLM 150


>gi|213517088|gb|ACJ49982.1| recombinase A [Pectobacterium carotovorum]
 gi|213517166|gb|ACJ50021.1| recombinase A [Pectobacterium betavasculorum]
 gi|213517186|gb|ACJ50031.1| recombinase A [Pectobacterium carotovorum]
          Length = 160

 Score =  249 bits (635), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 115/160 (71%), Positives = 138/160 (86%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ N
Sbjct: 1   GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDN 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQ
Sbjct: 61  LLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
           A+RKL  ++ ++  +L+FINQ+RMKIGVMFG+PETTTGGN
Sbjct: 121 AMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGN 160


>gi|213517304|gb|ACJ50090.1| recombinase A [Erwinia amylovora]
          Length = 160

 Score =  248 bits (633), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 115/160 (71%), Positives = 137/160 (85%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ N
Sbjct: 1   GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDN 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQ
Sbjct: 61  LLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
           A+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETTTGGN
Sbjct: 121 AMRKLAGNLKNSGTLLIFINQIRMKIGVMFGNPETTTGGN 160


>gi|29652001|gb|AAO87663.1| RecA [Listeria monocytogenes]
          Length = 175

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 119/177 (67%), Positives = 147/177 (83%), Gaps = 2/177 (1%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA+ 
Sbjct: 1   IMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEV 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRSGAVD++VI
Sbjct: 59  QAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLVI 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+R K+G
Sbjct: 119 DSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVG 175


>gi|325651011|emb|CBY89327.1| RecA protein [Bradyrhizobium japonicum]
          Length = 156

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 117/157 (74%), Positives = 140/157 (89%), Gaps = 1/157 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG      + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQAL
Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQAL 156


>gi|160947820|gb|ABX54719.1| RecA protein [Phyllobacterium sp. CCBAU 13011]
          Length = 158

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 120/152 (78%), Positives = 137/152 (90%), Gaps = 1/152 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE V +GSL LDIALG+GG PKGRI
Sbjct: 8   VDKTKALDAALSQIERAFGKGSIMRLGRNEQVVE-IETVPTGSLSLDIALGVGGLPKGRI 66

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 67  VEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 126

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           GEQALEITD LVRSGA+D++V+DSVAALTPRA
Sbjct: 127 GEQALEITDTLVRSGAIDVLVVDSVAALTPRA 158


>gi|213517040|gb|ACJ49958.1| recombinase A [Dickeya zeae]
          Length = 160

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 115/160 (71%), Positives = 138/160 (86%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ N
Sbjct: 1   GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDN 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQ
Sbjct: 61  LLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
           A+RKL  ++ +S  +L+FINQ+RMKIGVMFG+P+TTTGGN
Sbjct: 121 AMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPKTTTGGN 160


>gi|38602341|emb|CAD58026.1| recombinase A [Acetobacter pomorum]
          Length = 152

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 116/152 (76%), Positives = 138/152 (90%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGAVD++V+DSVAAL PRAE+EG+MG+S  G+ ARLMSQALRKLT +++RS  +++F+
Sbjct: 1   VRSGAVDVLVVDSVAALVPRAELEGNMGDSHVGLHARLMSQALRKLTGTVARSNTLMIFL 60

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+R+KIGVMFG+PETTTGGNALKFYSSVR+DIRR+GSIKDKD +TGNQTRVKVVKNKMA
Sbjct: 61  NQIRLKIGVMFGNPETTTGGNALKFYSSVRMDIRRIGSIKDKDEVTGNQTRVKVVKNKMA 120

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
            PF+QVEFDIM  EGIS  GELIDLGVKA +V
Sbjct: 121 PPFRQVEFDIMLREGISKVGELIDLGVKAGVV 152


>gi|180050821|gb|ACB87024.1| RecA [Bacteriovorax sp. SJ]
          Length = 171

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 119/172 (69%), Positives = 147/172 (85%), Gaps = 1/172 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL+ AL+ I++ +GKGAIM+L S+  + E +  +S+G LGLD+ALG+GG P+GRI+E+YG
Sbjct: 1   ALDLALATIEKQFGKGAIMKLDSEKKL-EKVPAISTGCLGLDLALGVGGIPQGRIIEVYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL LH  A+ QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+GEQAL
Sbjct: 60  PESSGKTTLTLHAAAECQKAGGTVAFIDAEHALDTYYAEKLGVDVPNTLISQPDSGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           EI DMLVRSGAVD++++DSVAALTPRAE+EGDMG+S  G+QARLMSQALRKL
Sbjct: 120 EIADMLVRSGAVDLLIVDSVAALTPRAELEGDMGDSHMGLQARLMSQALRKL 171


>gi|20513242|emb|CAD30724.1| glutamine synthetase II [Mesorhizobium sp. HB5A4]
 gi|20513244|emb|CAD30725.1| glutamine synthetase II [Mesorhizobium sp. HN15B23]
          Length = 423

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 124/182 (68%), Positives = 148/182 (81%), Gaps = 5/182 (2%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAI---MQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           R    I D+  ++    S ++  Y KG +     LG+   + E IE V +GSLGLDIALG
Sbjct: 244 RFSYGIADRGASIRVPHSFVKNDY-KGYLEDRRPLGANEQVVE-IETVPTGSLGLDIALG 301

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG P+GRI+EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+
Sbjct: 302 VGGLPRGRIIEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLE 361

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMS
Sbjct: 362 NLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMS 421

Query: 181 QA 182
           QA
Sbjct: 422 QA 423


>gi|16612103|gb|AAL27454.1| RecA [Burkholderia cepacia]
          Length = 175

 Score =  248 bits (632), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 128/174 (73%), Positives = 152/174 (87%), Gaps = 1/174 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 175


>gi|5002561|emb|CAB44341.1| RecA protein [Geodermatophilus obscurus]
          Length = 169

 Score =  248 bits (632), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 117/169 (69%), Positives = 142/169 (84%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ALH IA +Q  GG CAF+DAEHALD  YARKLGVD  +LL+SQPD GEQALEI D LV
Sbjct: 1   TVALHAIANAQAEGGICAFIDAEHALDPEYARKLGVDTDSLLVSQPDNGEQALEIADTLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+++IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +++ +    +FIN
Sbjct: 61  RSGALELIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGALNAAGTTAIFIN 120

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           Q+R KIGVMFGSPETTTGG ALKFYSSVRLD+RRV ++KD   + GN+T
Sbjct: 121 QLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRVETLKDGSEMVGNRT 169


>gi|16612096|gb|AAL27452.1| RecA [Burkholderia cepacia]
          Length = 175

 Score =  248 bits (632), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 128/174 (73%), Positives = 152/174 (87%), Gaps = 1/174 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPKLLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 175


>gi|257812107|gb|ACV69921.1| RecA [Mesorhizobium robiniae]
          Length = 144

 Score =  248 bits (632), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 116/140 (82%), Positives = 131/140 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAE
Sbjct: 5   IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAE 64

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIE
Sbjct: 65  HALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIE 124

Query: 165 GDMGESLPGMQARLMSQALR 184
           G+MG+SLPG+QARLMSQ LR
Sbjct: 125 GEMGDSLPGLQARLMSQRLR 144


>gi|223950663|emb|CAX46389.1| recombination protein A [Shinella sp. DC-196]
          Length = 147

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 119/148 (80%), Positives = 135/148 (91%), Gaps = 1/148 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG + S+ E +E VS+GSL LD+ALGIGG PKGRI+EIYGPESSGKTTLAL TIA+SQK
Sbjct: 1   KLGGKDSVIE-VETVSTGSLSLDVALGIGGLPKGRIIEIYGPESSGKTTLALQTIAESQK 59

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DS
Sbjct: 60  KGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDS 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQ 181
           VAALTPRAEIEG+MGESLP +QARLMSQ
Sbjct: 120 VAALTPRAEIEGEMGESLPALQARLMSQ 147


>gi|38602309|emb|CAD58010.1| recombinase A [Gluconacetobacter hansenii]
          Length = 152

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 118/152 (77%), Positives = 135/152 (88%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGA D++VIDSVAAL PRAE+ G  G+S  G+ ARLMSQALRKLT S+SRS  +++F+
Sbjct: 1   VRSGAXDVLVIDSVAALVPRAELXGXXGDSHVGLHARLMSQALRKLTGSVSRSNTMMIFL 60

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+R+KIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDKD + GNQTRVKVVKNKMA
Sbjct: 61  NQIRLKIGVMFGSPETTTGGNALKFYASVRMDIRRIGSIKDKDEVVGNQTRVKVVKNKMA 120

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
            PF+QVEFDIMYGEGIS  GELIDLGVKA IV
Sbjct: 121 PPFRQVEFDIMYGEGISKMGELIDLGVKAGIV 152


>gi|193227233|emb|CAQ17085.1| recombinase A [Ensifer adhaerens]
 gi|193227235|emb|CAQ17086.1| recombinase A [Ensifer adhaerens]
 gi|193227237|emb|CAQ17087.1| recombinase A [Ensifer adhaerens]
          Length = 149

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 120/150 (80%), Positives = 137/150 (91%), Gaps = 1/150 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL T+
Sbjct: 1   KGSIMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTV 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 60  AEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +V+DSVAAL PRAEIEG+MG++LPGMQARL
Sbjct: 120 LVVDSVAALVPRAEIEGEMGDNLPGMQARL 149


>gi|20513228|emb|CAD30717.1| glutamine synthetase 1 [Mesorhizobium sp. HB5A4]
 gi|20513230|emb|CAD30718.1| glutamine synthetase 1 [Mesorhizobium sp. HN15B23]
          Length = 461

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 117/150 (78%), Positives = 135/150 (90%), Gaps = 1/150 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
             LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++Q
Sbjct: 313 FPLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQ 371

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+D
Sbjct: 372 KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVD 431

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           SVAALTPRAEIEG+MG+SLPG+QARLMSQA
Sbjct: 432 SVAALTPRAEIEGEMGDSLPGLQARLMSQA 461


>gi|226903666|gb|ACO90396.1| RecA [Sinorhizobium xinjiangense]
          Length = 149

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 121/150 (80%), Positives = 137/150 (91%), Gaps = 1/150 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTT
Sbjct: 1   IERSFGKGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVR
Sbjct: 60  LALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           SGA+D++V+DSVAAL PRAEIEG+MG+SLP
Sbjct: 120 SGAIDVLVVDSVAALVPRAEIEGEMGDSLP 149


>gi|291246138|gb|ADD85193.1| RecA [Borrelia recurrentis]
          Length = 173

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 114/167 (68%), Positives = 146/167 (87%)

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEI+GPESSGKTTL L  IA+ QKTGG  AF+DAEHALD +YAR LGV++  L +SQPDT
Sbjct: 1   VEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQPDT 60

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQAL+I + L+RSG VD+IV+DSVAAL P+AEI+G+MG++  G+QARLMS+ALRK+T+ 
Sbjct: 61  GEQALDIAEYLIRSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGLQARLMSKALRKITAI 120

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           +S+S   ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V
Sbjct: 121 LSKSNACIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKV 167


>gi|29652054|gb|AAO87689.1| RecA [Listeria monocytogenes]
          Length = 181

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 119/183 (65%), Positives = 151/183 (82%), Gaps = 2/183 (1%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           ++ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGP
Sbjct: 1   IDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK 
Sbjct: 119 IAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKT 178

Query: 196 ILV 198
           I +
Sbjct: 179 IAI 181


>gi|20513218|emb|CAD30712.1| glutamine synthetase 1 [Mesorhizobium sp. ZJ15B7]
          Length = 461

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 117/150 (78%), Positives = 135/150 (90%), Gaps = 1/150 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
             LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++Q
Sbjct: 313 FPLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQ 371

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+D
Sbjct: 372 KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVD 431

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           SVAALTPRAEIEG+MG+SLPG+QARLMSQA
Sbjct: 432 SVAALTPRAEIEGEMGDSLPGLQARLMSQA 461


>gi|119691895|gb|ABL95844.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691897|gb|ABL95845.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691899|gb|ABL95846.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691901|gb|ABL95847.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691903|gb|ABL95848.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691905|gb|ABL95849.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691907|gb|ABL95850.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691909|gb|ABL95851.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691911|gb|ABL95852.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691913|gb|ABL95853.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691915|gb|ABL95854.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691917|gb|ABL95855.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691919|gb|ABL95856.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691921|gb|ABL95857.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691923|gb|ABL95858.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691925|gb|ABL95859.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691927|gb|ABL95860.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691929|gb|ABL95861.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691931|gb|ABL95862.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691933|gb|ABL95863.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691935|gb|ABL95864.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691937|gb|ABL95865.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691939|gb|ABL95866.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691941|gb|ABL95867.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691943|gb|ABL95868.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691945|gb|ABL95869.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691947|gb|ABL95870.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691949|gb|ABL95871.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691951|gb|ABL95872.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691953|gb|ABL95873.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691955|gb|ABL95874.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691957|gb|ABL95875.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691959|gb|ABL95876.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691961|gb|ABL95877.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691963|gb|ABL95878.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691965|gb|ABL95879.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691967|gb|ABL95880.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691969|gb|ABL95881.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691971|gb|ABL95882.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691973|gb|ABL95883.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691975|gb|ABL95884.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691977|gb|ABL95885.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691979|gb|ABL95886.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691981|gb|ABL95887.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691983|gb|ABL95888.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691985|gb|ABL95889.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691987|gb|ABL95890.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691989|gb|ABL95891.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691991|gb|ABL95892.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691993|gb|ABL95893.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691995|gb|ABL95894.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691997|gb|ABL95895.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691999|gb|ABL95896.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692001|gb|ABL95897.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692003|gb|ABL95898.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692005|gb|ABL95899.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692007|gb|ABL95900.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692009|gb|ABL95901.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692011|gb|ABL95902.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692013|gb|ABL95903.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692015|gb|ABL95904.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692017|gb|ABL95905.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692019|gb|ABL95906.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692021|gb|ABL95907.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692023|gb|ABL95908.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692025|gb|ABL95909.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692027|gb|ABL95910.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692029|gb|ABL95911.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692031|gb|ABL95912.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692033|gb|ABL95913.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692035|gb|ABL95914.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692037|gb|ABL95915.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692039|gb|ABL95916.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692041|gb|ABL95917.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692043|gb|ABL95918.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692045|gb|ABL95919.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692047|gb|ABL95920.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692049|gb|ABL95921.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692051|gb|ABL95922.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692053|gb|ABL95923.1| RecA [Aggregatibacter actinomycetemcomitans HK1651]
 gi|119692055|gb|ABL95924.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692057|gb|ABL95925.1| RecA [Aggregatibacter actinomycetemcomitans]
          Length = 165

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 122/167 (73%), Positives = 142/167 (85%), Gaps = 2/167 (1%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKGAIM+LG    +   IE +S+GS GLD+ALGIGG P GRIVEI+GPESSGKTTL
Sbjct: 1   EKQFGKGAIMKLGDSQKL--DIEAISTGSFGLDLALGIGGLPMGRIVEIFGPESSGKTTL 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA++QKTG TCAF+DAEHALD IYA KLGVD+K LL+SQPD GEQALEI D LVRS
Sbjct: 59  TLSVIAEAQKTGKTCAFIDAEHALDPIYASKLGVDVKELLVSQPDNGEQALEICDALVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           GAVD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLTS I
Sbjct: 119 GAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTSQI 165


>gi|16612092|gb|AAL27451.1| RecA [Burkholderia cepacia]
          Length = 175

 Score =  247 bits (630), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 128/174 (73%), Positives = 152/174 (87%), Gaps = 1/174 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 175


>gi|310892475|gb|ADP37382.1| recombinase protein A [Rhizobium sp. CCNWQTX14-2]
          Length = 147

 Score =  247 bits (630), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 120/146 (82%), Positives = 134/146 (91%), Gaps = 1/146 (0%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
           + GSI E IE + +GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG
Sbjct: 3   AAGSIVE-IETIPTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGG 61

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
            CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAA
Sbjct: 62  ICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAA 121

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQA 182
           LTPRAEIEG+MG+SLPG+QARLMSQA
Sbjct: 122 LTPRAEIEGEMGDSLPGLQARLMSQA 147


>gi|10444918|gb|AAG16506.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  247 bits (630), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 114/174 (65%), Positives = 143/174 (82%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTQNLLVSQPDTGEQALEILETITRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    LVFINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIR 120

Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ S+K  +   GN+ + KVVKN
Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIASLKQNEQHIGNRAKAKVVKN 174


>gi|325973667|ref|YP_004250731.1| recombinase A [Mycoplasma suis str. Illinois]
 gi|325990110|ref|YP_004249809.1| RecA recombinase [Mycoplasma suis KI3806]
 gi|323575195|emb|CBZ40860.1| RecA recombinase [Mycoplasma suis]
 gi|323652269|gb|ADX98351.1| recombinase A [Mycoplasma suis str. Illinois]
          Length = 328

 Score =  247 bits (630), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 113/262 (43%), Positives = 175/262 (66%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + SGS  LD ALG  G+PKG+I+EI+G +SSGK+TLALH +A++QK G TC ++D E+ L
Sbjct: 39  IPSGSYQLDKALGANGWPKGKIIEIFGSDSSGKSTLALHAVAEAQKQGKTCVYIDLENTL 98

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           +  +A K+GV   NL I  P +GE+  E+   L++    D+I++DSVAA+ P AE++  +
Sbjct: 99  NVSWAEKIGVQTNNLYICTPSSGEETFEVIGTLIQDQGADLIIVDSVAAMVPEAELDASL 158

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
            +   G+QARLMS+ LR + S + +S   ++FINQ+R +I   F    TTTGG ALK+ +
Sbjct: 159 SDQSMGLQARLMSKGLRIIQSHLLKSHTTIIFINQIREQIKQTFFPSTTTTGGRALKYAA 218

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           S+R+++R+  +IK  + I G  T++ +VKNK  +P  Q+   + +  G + F ELI+L +
Sbjct: 219 SIRVEVRKQEAIKQGEKIIGYLTKITIVKNKFNNPMIQIPLGLYFDAGFNKFFELINLAI 278

Query: 288 KASIVDKSGAWFSFKGQRLGQG 309
           +  I++K GAWF +K + LGQG
Sbjct: 279 EKKIIEKRGAWFYYKDKNLGQG 300


>gi|90568916|gb|ABD94352.1| RecA [Thermoanaerobacter mathranii subsp. alimentarius]
          Length = 176

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 118/176 (67%), Positives = 145/176 (82%)

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI + LVRSGAVDIIVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+S
Sbjct: 1   LEIAEALVRSGAVDIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKS 60

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
           K I+VFINQ+R K+G+MFG+PETT GG ALKFY+++RLD+R+V  IK  + I GN+TRVK
Sbjct: 61  KTIVVFINQLREKVGIMFGNPETTPGGRALKFYATIRLDVRKVDPIKQGNEIVGNRTRVK 120

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           VVKNK+A PFKQ EFDIMYGEGIS  G ++D+G    I++KSGAW+S+   RLGQG
Sbjct: 121 VVKNKVAPPFKQAEFDIMYGEGISREGSILDIGTSIDIIEKSGAWYSYGDIRLGQG 176


>gi|33087795|gb|AAP93028.1| recombination protein A [Yersinia bercovieri]
          Length = 182

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 120/184 (65%), Positives = 149/184 (80%), Gaps = 2/184 (1%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGP
Sbjct: 1   LAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  
Sbjct: 119 ICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANT 178

Query: 196 ILVF 199
           +L+F
Sbjct: 179 LLIF 182


>gi|10444886|gb|AAG16490.1| RecA [Helicobacter pylori]
 gi|10444890|gb|AAG16492.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 114/174 (65%), Positives = 143/174 (82%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    LVFINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIR 120

Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ S+K  +   GN+ + KVVKN
Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIASLKQNEQHIGNRAKAKVVKN 174


>gi|29652306|gb|AAO87814.1| RecA [Listeria monocytogenes]
          Length = 180

 Score =  246 bits (629), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 119/181 (65%), Positives = 150/181 (82%), Gaps = 2/181 (1%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           ++ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGP
Sbjct: 1   IDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK 
Sbjct: 119 IAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKT 178

Query: 196 I 196
           I
Sbjct: 179 I 179


>gi|20513234|emb|CAD30720.1| glutamine synthetase II [Mesorhizobium sp. HN8A1]
 gi|20513238|emb|CAD30722.1| glutamine synthetase II [Mesorhizobium sp. JS5A15]
          Length = 423

 Score =  246 bits (629), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 122/177 (68%), Positives = 147/177 (83%), Gaps = 5/177 (2%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAI---MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           + D+  ++    S ++  Y KG +     LG+   + E IE V +GSLGLDIALG+GG P
Sbjct: 249 VADRGASIRVPHSFVKNDY-KGYLEDRRPLGANEQVVE-IETVPTGSLGLDIALGVGGLP 306

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 307 RGRIIEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 366

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           QPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQA
Sbjct: 367 QPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQA 423


>gi|20513246|emb|CAD30726.1| DNA recombinase A [Mesorhizobium sp. ZJ15B7]
 gi|20513248|emb|CAD30727.1| DNA recombinase A [Mesorhizobium sp. HN8A1]
 gi|20513250|emb|CAD30728.1| DNA recombinase A [Mesorhizobium sp. JX2B5]
 gi|20513252|emb|CAD30729.1| DNA recombinase A [Mesorhizobium sp. HN14A16]
 gi|20513254|emb|CAD30730.1| DNA recombinase A [Mesorhizobium sp. HB5A4]
 gi|20513256|emb|CAD30731.1| DNA recombinase A [Mesorhizobium sp. JS5A15]
 gi|20513258|emb|CAD30732.1| DNA recombinase A [Mesorhizobium sp. HN15B23]
          Length = 147

 Score =  246 bits (629), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 117/148 (79%), Positives = 135/148 (91%), Gaps = 1/148 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++QK 
Sbjct: 1   LGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQKK 59

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSV
Sbjct: 60  GGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSV 119

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQA 182
           AALTPRAEIEG+MG+SLPG+QARLMSQA
Sbjct: 120 AALTPRAEIEGEMGDSLPGLQARLMSQA 147


>gi|213516922|gb|ACJ49899.1| recombinase A [Dickeya zeae]
          Length = 160

 Score =  246 bits (629), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 114/160 (71%), Positives = 138/160 (86%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ N
Sbjct: 1   GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDN 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+A+IEG++G+S  G+ AR+MSQ
Sbjct: 61  LLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAKIEGEIGDSHMGLAARMMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
           A+RKL  ++ +S  +L+FINQ+RMKIGVMFG+P+TTTGGN
Sbjct: 121 AMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPKTTTGGN 160


>gi|153870319|ref|ZP_01999744.1| truncated RecA bacterial DNA recombination protein [Beggiatoa sp.
           PS]
 gi|152073207|gb|EDN70248.1| truncated RecA bacterial DNA recombination protein [Beggiatoa sp.
           PS]
          Length = 196

 Score =  246 bits (629), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 118/189 (62%), Positives = 151/189 (79%), Gaps = 1/189 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL   L QI++ +GKGA+M+LG   + F+ +E VS+GSLGLDIALG+GG P GR+V
Sbjct: 4   NKKQALATTLKQIEKQFGKGAVMRLGDVSTTFD-VETVSTGSLGLDIALGVGGLPTGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPE+SGKTTL L   A+ QK GG  AFVDAEHALDS YA  +GV++  L +SQP+ G
Sbjct: 63  EIYGPEASGKTTLTLQVTAEMQKKGGLVAFVDAEHALDSRYAENIGVNVSELYLSQPNDG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ALEITD LVRSG  D++VIDSVAALTP+AEIEGDMG+   G+QARLMSQALRKLT++I
Sbjct: 123 EEALEITDTLVRSGTFDLVVIDSVAALTPKAEIEGDMGDQHMGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVF 199
           +R+  +++ 
Sbjct: 183 NRTNTLVIL 191


>gi|150171060|emb|CAO01513.1| DNA recombination protein [Burkholderia diffusa]
          Length = 178

 Score =  246 bits (629), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 112/165 (67%), Positives = 144/165 (87%)

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
           QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIR
Sbjct: 1   QARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIR 60

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK 294
           R+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK
Sbjct: 61  RIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDK 120

Query: 295 SGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +GAW+S+ G+++GQG++N++ FLREN EIA  IE+ +R++ G+ A
Sbjct: 121 AGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIRESLGVAA 165


>gi|213517208|gb|ACJ50042.1| recombinase A [Dickeya zeae]
          Length = 160

 Score =  246 bits (629), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 115/160 (71%), Positives = 137/160 (85%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ N
Sbjct: 1   GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDN 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQ
Sbjct: 61  LLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
           A+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTT GN
Sbjct: 121 AMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTVGN 160


>gi|10444844|gb|AAG16469.1| RecA [Helicobacter pylori]
 gi|10444848|gb|AAG16471.1| RecA [Helicobacter pylori]
 gi|10444928|gb|AAG16511.1| RecA [Helicobacter pylori]
 gi|10444934|gb|AAG16514.1| RecA [Helicobacter pylori]
 gi|10444936|gb|AAG16515.1| RecA [Helicobacter pylori]
 gi|10444978|gb|AAG16536.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  246 bits (629), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 113/174 (64%), Positives = 143/174 (82%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTQNLLVSQPDTGEQALEILETITRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120

Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ S+K  +   GN+ + KVVKN
Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIASLKQNEQHIGNRAKAKVVKN 174


>gi|38602333|emb|CAD58022.1| recombinase A [Acetobacter indonesiensis]
          Length = 152

 Score =  246 bits (628), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 115/152 (75%), Positives = 136/152 (89%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           V SG + ++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT S++RS  +++F+
Sbjct: 1   VXSGXIPVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGSVARSNTMMIFL 60

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+R+KIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIKDKD + GNQTRVKVVKNKMA
Sbjct: 61  NQIRLKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKDKDEVVGNQTRVKVVKNKMA 120

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
            PF+QVEFDIMYGEGIS  GELIDLGVKA +V
Sbjct: 121 PPFRQVEFDIMYGEGISKVGELIDLGVKAGVV 152


>gi|307827258|gb|ADN94654.1| RecA [Aggregatibacter actinomycetemcomitans]
          Length = 163

 Score =  246 bits (628), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 122/164 (74%), Positives = 140/164 (85%), Gaps = 2/164 (1%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKGAIM+LG    +   IE +S+GS GLD+ALGIGG P GRIVEI+GPESSGKTTL L 
Sbjct: 2   FGKGAIMKLGDSQKL--DIEAISTGSFGLDLALGIGGLPMGRIVEIFGPESSGKTTLTLS 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA++QKTG TCAF+DAEHALD IYA KLGVD+K LL+SQPD GEQALEI D LVRSGAV
Sbjct: 60  VIAEAQKTGKTCAFIDAEHALDPIYASKLGVDVKELLVSQPDNGEQALEICDALVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           D+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLTS I
Sbjct: 120 DVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTSQI 163


>gi|213517108|gb|ACJ49992.1| recombinase A [Dickeya dianthicola]
          Length = 160

 Score =  246 bits (628), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 115/160 (71%), Positives = 137/160 (85%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ N
Sbjct: 1   GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRGGKTCAFIDAEHALDPIYAKKLGVDIDN 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL SQPDTGEQALEI D L RSGA D+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQ
Sbjct: 61  LLCSQPDTGEQALEICDALARSGAGDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
           A+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGN
Sbjct: 121 AMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGN 160


>gi|257812111|gb|ACV69923.1| RecA [Mesorhizobium robiniae]
          Length = 138

 Score =  246 bits (628), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 115/137 (83%), Positives = 130/137 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHAL
Sbjct: 2   VPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+M
Sbjct: 62  DPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 121

Query: 168 GESLPGMQARLMSQALR 184
           G+SLPG+QARLMSQALR
Sbjct: 122 GDSLPGLQARLMSQALR 138


>gi|10444842|gb|AAG16468.1| RecA [Helicobacter pylori]
 gi|10444866|gb|AAG16480.1| RecA [Helicobacter pylori]
 gi|10444878|gb|AAG16486.1| RecA [Helicobacter pylori]
 gi|10444926|gb|AAG16510.1| RecA [Helicobacter pylori]
 gi|10444946|gb|AAG16520.1| RecA [Helicobacter pylori]
 gi|10444968|gb|AAG16531.1| RecA [Helicobacter pylori]
 gi|10444970|gb|AAG16532.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  246 bits (628), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 113/174 (64%), Positives = 143/174 (82%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120

Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ S+K  +   GN+ + KVVKN
Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIASLKQNEQHIGNRAKAKVVKN 174


>gi|325651055|emb|CBY89349.1| RecA protein [Bradyrhizobium sp. R-46212=t426]
          Length = 174

 Score =  246 bits (628), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 117/157 (74%), Positives = 139/157 (88%), Gaps = 1/157 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG      + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           D++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQA+
Sbjct: 120 DVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQAV 156


>gi|310892467|gb|ADP37378.1| recombinase protein A [Rhizobium sp. CCNWMQ14-1]
          Length = 147

 Score =  246 bits (628), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 119/145 (82%), Positives = 134/145 (92%), Gaps = 1/145 (0%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
           + GSI E IE + +GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG
Sbjct: 3   AAGSIVE-IETIPTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGG 61

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
            CAFVDAEHALD++YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAA
Sbjct: 62  ICAFVDAEHALDTVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAA 121

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQ 181
           LTPRAEIEG+MG+SLPG+QARLMSQ
Sbjct: 122 LTPRAEIEGEMGDSLPGLQARLMSQ 146


>gi|212286511|dbj|BAG82902.1| RecA protein [Rhizobium sp. Cg-N13]
          Length = 145

 Score =  246 bits (628), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 120/146 (82%), Positives = 134/146 (91%), Gaps = 1/146 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  +I E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARL 178
           SVAALTPRAEIEGDMG++LPGMQARL
Sbjct: 120 SVAALTPRAEIEGDMGDNLPGMQARL 145


>gi|16612106|gb|AAL27455.1| RecA [Burkholderia cepacia]
          Length = 175

 Score =  246 bits (627), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 127/174 (72%), Positives = 152/174 (87%), Gaps = 1/174 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EQALEITD LVRSG++D+IVIDSVAAL P+A+IEG+MG+SLPG+QARLMSQALR
Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAKIEGEMGDSLPGLQARLMSQALR 175


>gi|118185924|gb|ABK76575.1| RecA [Bacillus vietnamensis]
          Length = 183

 Score =  246 bits (627), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 119/183 (65%), Positives = 150/183 (81%), Gaps = 2/183 (1%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+LG +      +    SGSL LD ALGIGG+P+GRI+E+YGPESSGKT
Sbjct: 2   QIEKQFGKGSIMKLGEKTD--RNVVTCPSGSLALDAALGIGGYPRGRIIEVYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ALH IA+ Q  GG  AF+DAEHALD  YA+KLGV++  LL+SQPDTGEQALEI + LV
Sbjct: 60  TVALHAIAEVQAQGGQAAFIDAEHALDPEYAQKLGVNIDELLLSQPDTGEQALEIAEALV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD IV+DSVAAL P+AEIEG+MG++  G+QARLMSQALRKL+ +I++SK I +FIN
Sbjct: 120 RSGAVDAIVVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLSGAINKSKTIAIFIN 179

Query: 202 QMR 204
           Q+R
Sbjct: 180 QIR 182


>gi|10444958|gb|AAG16526.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  246 bits (627), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 113/174 (64%), Positives = 143/174 (82%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTQNLLVSQPDTGEQALEILETITRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    LVFINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIR 120

Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+ + KVVKN
Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIATLKQNEQHIGNRAKAKVVKN 174


>gi|33087817|gb|AAP93039.1| recombination protein A [Yersinia frederiksenii]
          Length = 171

 Score =  246 bits (627), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 115/165 (69%), Positives = 139/165 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 7   VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRAGKTCAFIDAE 66

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIE
Sbjct: 67  HALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIE 126

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           G++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ+RMKIGV
Sbjct: 127 GEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQIRMKIGV 171


>gi|16612109|gb|AAL27456.1| RecA [Burkholderia cepacia]
          Length = 175

 Score =  246 bits (627), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 128/174 (73%), Positives = 151/174 (86%), Gaps = 1/174 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM+ G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRTGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 175


>gi|10444854|gb|AAG16474.1| RecA [Helicobacter pylori]
 gi|10444906|gb|AAG16500.1| RecA [Helicobacter pylori]
 gi|10444908|gb|AAG16501.1| RecA [Helicobacter pylori]
 gi|10444942|gb|AAG16518.1| RecA [Helicobacter pylori]
 gi|10444944|gb|AAG16519.1| RecA [Helicobacter pylori]
 gi|10444972|gb|AAG16533.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  246 bits (627), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 113/174 (64%), Positives = 143/174 (82%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    LVFINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIR 120

Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+ + KVVKN
Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKN 174


>gi|212286521|dbj|BAG82906.1| RecA protein [Rhizobium sp. Cg-S9]
          Length = 145

 Score =  246 bits (627), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 120/146 (82%), Positives = 134/146 (91%), Gaps = 1/146 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  SI E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNESIVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARL 178
           SVAALTPRAEIEG+MG+SLPG+QARL
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARL 145


>gi|33087857|gb|AAP93059.1| recombination protein A [Yersinia mollaretii]
          Length = 173

 Score =  246 bits (627), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 115/165 (69%), Positives = 139/165 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 9   VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRAGKTCAFIDAE 68

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIE
Sbjct: 69  HALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIE 128

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           G++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ+RMKIGV
Sbjct: 129 GEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQIRMKIGV 173


>gi|313670312|gb|ADR73347.1| recombination protein A [Bradyrhizobium jicamae]
          Length = 154

 Score =  245 bits (626), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 113/146 (77%), Positives = 134/146 (91%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALH +A+ Q+ GG CAF+DAE
Sbjct: 9   IETVSTGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHCVAEGQRKGGICAFIDAE 68

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGA+D++V+DSVAAL P+AE+E
Sbjct: 69  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALVPKAELE 128

Query: 165 GDMGESLPGMQARLMSQALRKLTSSI 190
           G+MG++LPG+QARLMSQALRKLT+SI
Sbjct: 129 GEMGDALPGLQARLMSQALRKLTASI 154


>gi|164459612|gb|ABY57913.1| recombinase A [Escherichia coli O157:H7]
          Length = 160

 Score =  245 bits (626), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 113/160 (70%), Positives = 143/160 (89%)

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           ARKLGVD+ NLL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S 
Sbjct: 1   ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 60

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
            G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRL
Sbjct: 61  MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRL 120

Query: 232 DIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           DIRR+G++K+ +++ G++TRVKVVKNK+A+PFKQ EF I+
Sbjct: 121 DIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQIL 160


>gi|33087787|gb|AAP93024.1| recombination protein A [Yersinia bercovieri]
          Length = 176

 Score =  245 bits (626), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 121/176 (68%), Positives = 146/176 (82%), Gaps = 2/176 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 1   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 58

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 59  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 118

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL
Sbjct: 119 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 174


>gi|10444880|gb|AAG16487.1| RecA [Helicobacter pylori]
 gi|10444940|gb|AAG16517.1| RecA [Helicobacter pylori]
 gi|10444956|gb|AAG16525.1| RecA [Helicobacter pylori]
 gi|10444966|gb|AAG16530.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  245 bits (626), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 143/174 (82%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTQNLLVSQPDTGEQALEILETITRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120

Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+ + KVVKN
Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKN 174


>gi|163749987|ref|ZP_02157231.1| recombinase A [Shewanella benthica KT99]
 gi|161330261|gb|EDQ01242.1| recombinase A [Shewanella benthica KT99]
          Length = 205

 Score =  245 bits (626), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 120/183 (65%), Positives = 149/183 (81%), Gaps = 2/183 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL A LSQI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKEKALNAVLSQIEKQFGKGSIMKLGENRSM--DVETISTGSLSLDIALGAGGLPLGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEH+LD IYA+ LGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLEVIAAAQRQGRTCAFIDAEHSLDPIYAKNLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRS 193
            ++
Sbjct: 184 KQN 186


>gi|310892469|gb|ADP37379.1| recombinase protein A [Rhizobium sp. CCNWMQ14-2]
 gi|310892471|gb|ADP37380.1| recombinase protein A [Rhizobium sp. CCNWQTX14]
 gi|310892473|gb|ADP37381.1| recombinase protein A [Rhizobium sp. CCNWQTX3]
          Length = 147

 Score =  245 bits (626), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 119/145 (82%), Positives = 133/145 (91%), Gaps = 1/145 (0%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
           + GSI E IE + +GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG
Sbjct: 3   AAGSIVE-IETIPTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGG 61

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
            CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAA
Sbjct: 62  ICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAA 121

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQ 181
           LTPRAEIEG+MG+SLPG+QARLMSQ
Sbjct: 122 LTPRAEIEGEMGDSLPGLQARLMSQ 146


>gi|257812105|gb|ACV69920.1| RecA [Mesorhizobium robiniae]
          Length = 144

 Score =  245 bits (626), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 115/139 (82%), Positives = 130/139 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAE
Sbjct: 6   IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAE 65

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIE
Sbjct: 66  HALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIE 125

Query: 165 GDMGESLPGMQARLMSQAL 183
           G+MG+SLPG+QARLMSQ L
Sbjct: 126 GEMGDSLPGLQARLMSQRL 144


>gi|325651041|emb|CBY89342.1| RecA protein [Bradyrhizobium sp. R-45743=1532]
          Length = 153

 Score =  245 bits (625), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 116/154 (75%), Positives = 137/154 (88%), Gaps = 1/154 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG      + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           D++V+DSVAAL P+AE+EG+MGESLPG+QARLMS
Sbjct: 120 DVLVVDSVAALVPKAELEGEMGESLPGLQARLMS 153


>gi|10444860|gb|AAG16477.1| RecA [Helicobacter pylori]
 gi|10444862|gb|AAG16478.1| RecA [Helicobacter pylori]
 gi|10444864|gb|AAG16479.1| RecA [Helicobacter pylori]
 gi|10444868|gb|AAG16481.1| RecA [Helicobacter pylori]
 gi|10444870|gb|AAG16482.1| RecA [Helicobacter pylori]
 gi|10444884|gb|AAG16489.1| RecA [Helicobacter pylori]
 gi|10444888|gb|AAG16491.1| RecA [Helicobacter pylori]
 gi|10444898|gb|AAG16496.1| RecA [Helicobacter pylori]
 gi|10444902|gb|AAG16498.1| RecA [Helicobacter pylori]
 gi|10444920|gb|AAG16507.1| RecA [Helicobacter pylori]
 gi|10444930|gb|AAG16512.1| RecA [Helicobacter pylori]
 gi|10444932|gb|AAG16513.1| RecA [Helicobacter pylori]
 gi|10444964|gb|AAG16529.1| RecA [Helicobacter pylori]
 gi|10444976|gb|AAG16535.1| RecA [Helicobacter pylori]
 gi|10444982|gb|AAG16538.1| RecA [Helicobacter pylori]
 gi|10444990|gb|AAG16542.1| RecA [Helicobacter pylori]
 gi|10444992|gb|AAG16543.1| RecA [Helicobacter pylori]
 gi|10444994|gb|AAG16544.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  245 bits (625), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 143/174 (82%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120

Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+ + KVVKN
Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKN 174


>gi|213012332|gb|ACJ38732.1| recombination-repair protein [Vibrio diabolicus]
          Length = 158

 Score =  245 bits (625), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 110/158 (69%), Positives = 140/158 (88%)

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           + G TCAF+DAEHALD +YA+KLGVD++ LL+SQPDTGEQALEI D L RSGA+D++V+D
Sbjct: 1   REGKTCAFIDAEHALDPVYAKKLGVDIEALLVSQPDTGEQALEICDALARSGAIDVMVVD 60

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG
Sbjct: 61  SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFG 120

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +PETTTGGNALKFY+SVRLDIRR G+IK+ D +  +QT
Sbjct: 121 NPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVLSQT 158


>gi|257812109|gb|ACV69922.1| RecA [Mesorhizobium robiniae]
          Length = 141

 Score =  245 bits (625), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 115/139 (82%), Positives = 130/139 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAE
Sbjct: 3   IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAE 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIE
Sbjct: 63  HALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIE 122

Query: 165 GDMGESLPGMQARLMSQAL 183
           G+MG+SLPG+QARLMSQ L
Sbjct: 123 GEMGDSLPGLQARLMSQRL 141


>gi|212286541|dbj|BAG82914.1| RecA protein [Rhizobium sp. 29118]
          Length = 145

 Score =  245 bits (625), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 120/146 (82%), Positives = 134/146 (91%), Gaps = 1/146 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  ++ E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPIYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARL 178
           SVAALTPRAEIEG+MG+SLPG+QARL
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARL 145


>gi|212286536|dbj|BAG82912.1| RecA protein [Rhizobium sp. 27118]
          Length = 145

 Score =  245 bits (625), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 120/146 (82%), Positives = 134/146 (91%), Gaps = 1/146 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  ++ E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VID
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARL 178
           SVAALTPRAEIEG+MG+SLPG+QARL
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARL 145


>gi|223950661|emb|CAX46388.1| recombination protein A [Shinella zoogloeoides]
          Length = 145

 Score =  245 bits (625), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 117/142 (82%), Positives = 132/142 (92%), Gaps = 1/142 (0%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99
           S+ E +E VS+GSL LD+ALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CA
Sbjct: 2   SVIE-VETVSTGSLSLDVALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICA 60

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTP
Sbjct: 61  FVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTP 120

Query: 160 RAEIEGDMGESLPGMQARLMSQ 181
           RAEIEG+MGESLPG+QARLMSQ
Sbjct: 121 RAEIEGEMGESLPGLQARLMSQ 142


>gi|77557438|gb|ABB00013.1| recombination protein A [Bradyrhizobium sp. CCBAU 43107]
          Length = 148

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 115/141 (81%), Positives = 131/141 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 8   VEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 67

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E
Sbjct: 68  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELE 127

Query: 165 GDMGESLPGMQARLMSQALRK 185
           G+MG++LPG+QARLMSQALRK
Sbjct: 128 GEMGDALPGLQARLMSQALRK 148


>gi|160375134|gb|ABX38947.1| recombinase protein A [Mesorhizobium ciceri]
          Length = 149

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 115/150 (76%), Positives = 136/150 (90%), Gaps = 1/150 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           +R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTL
Sbjct: 1   ERAFGKGSIMRLGANDQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRS
Sbjct: 60  ALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
           GA+D++V+DSVAALTPRAEIEG+MG+SLPG
Sbjct: 120 GAIDVLVVDSVAALTPRAEIEGEMGDSLPG 149


>gi|207109040|ref|ZP_03243202.1| recombinase A [Helicobacter pylori HPKX_438_CA4C1]
          Length = 210

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 113/192 (58%), Positives = 154/192 (80%), Gaps = 1/192 (0%)

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RM
Sbjct: 2   IDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRM 61

Query: 206 KIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           KIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+ + KVVKNK+A PF+
Sbjct: 62  KIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKNKVAPPFR 121

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           + EFDIM+GEGIS  GE+ID GVK  IVDKSGAW S++ ++LGQGREN+K  L+E+  +A
Sbjct: 122 EAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALA 181

Query: 325 ENIESLLRQNAG 336
           + I   ++++ G
Sbjct: 182 DEITLKIKESIG 193


>gi|324962818|gb|ADY62490.1| recombinase protein A [Mesorhizobium sp. CCNWSX661]
          Length = 144

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 114/137 (83%), Positives = 129/137 (94%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAE
Sbjct: 8   IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAE 67

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIE
Sbjct: 68  HALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIE 127

Query: 165 GDMGESLPGMQARLMSQ 181
           G+MG+SLPG+QARLMSQ
Sbjct: 128 GEMGDSLPGLQARLMSQ 144


>gi|38602315|emb|CAD58013.1| recombinase A [Gluconacetobacter rhaeticus]
          Length = 143

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 116/143 (81%), Positives = 131/143 (91%)

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT S+SRS  +L+F+NQ+R+KIGV
Sbjct: 1   VVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGSVSRSNTMLIFLNQIRLKIGV 60

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFGSPETTTGGNALKFY+SVR+DIRR+GSIKDKD +TGNQTRVKVVKNKMA PF+QVEFD
Sbjct: 61  MFGSPETTTGGNALKFYASVRMDIRRIGSIKDKDEVTGNQTRVKVVKNKMAPPFRQVEFD 120

Query: 270 IMYGEGISFFGELIDLGVKASIV 292
           IMYGEGIS  GELIDLGVKA IV
Sbjct: 121 IMYGEGISKVGELIDLGVKAGIV 143


>gi|212286546|dbj|BAG82916.1| RecA protein [Rhizobium sp. 15935]
 gi|212286556|dbj|BAG82920.1| RecA protein [Rhizobium sp. 29953]
          Length = 145

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 120/146 (82%), Positives = 133/146 (91%), Gaps = 1/146 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  ++ E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL NLLISQPDTGEQALEITD LVRSGAVD++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLHNLLISQPDTGEQALEITDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARL 178
           SVAALTPRAEIEG+MG+SLPG+QARL
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARL 145


>gi|167554612|dbj|BAG07005.1| recombinaseA [Leuconostoc fallax]
          Length = 164

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 114/164 (69%), Positives = 141/164 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LDIALG+GG+PKGRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  Y
Sbjct: 1   SVKLDIALGVGGYPKGRIIEVYGPESSGKTTIALHAVAEVQKQGGTAAYIDAENALDVKY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A  LGVD K LL+SQPDTGEQ LEI D LV+SGAVD+IV+DSVAAL PRAEIEG+MG++ 
Sbjct: 61  AEALGVDSKELLLSQPDTGEQGLEIADALVQSGAVDMIVVDSVAALVPRAEIEGEMGDAH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            G+QARLMSQALRKL  +++R+  I +FINQ+R K+GVMFG+PE
Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPE 164


>gi|212286501|dbj|BAG82898.1| RecA protein [Rhizobium sp. Pt2-A15]
          Length = 145

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 119/146 (81%), Positives = 134/146 (91%), Gaps = 1/146 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  ++ E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARL 178
           SVAALTPRAEIEG+MG+SLPG+QARL
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARL 145


>gi|213950712|gb|ACJ54601.1| recombination protein A [Sinorhizobium fredii]
          Length = 145

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 120/146 (82%), Positives = 134/146 (91%), Gaps = 1/146 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA
Sbjct: 1   GSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           ++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++
Sbjct: 60  EAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVL 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQ 175
           V+DSVAAL PRAEIEG+MG+SLPGMQ
Sbjct: 120 VVDSVAALVPRAEIEGEMGDSLPGMQ 145


>gi|301088182|gb|ADK61014.1| recombinase A [Pseudomonas koreensis]
 gi|309274199|gb|ADO63745.1| recombinase A [Pseudomonas koreensis]
 gi|309274201|gb|ADO63746.1| recombinase A [Pseudomonas koreensis]
 gi|309274208|gb|ADO63748.1| recombinase A [Pseudomonas koreensis]
          Length = 155

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 112/155 (72%), Positives = 139/155 (89%)

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+   G+Q
Sbjct: 1   GVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQ 60

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           ARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR
Sbjct: 61  ARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRR 120

Query: 236 VGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
            G++K+ D + G++TRVKVVKNK+ASPF+Q EF I
Sbjct: 121 TGAVKEGDEVVGSETRVKVVKNKVASPFRQAEFQI 155


>gi|118185914|gb|ABK76570.1| RecA [Bacillus coahuilensis]
 gi|118185916|gb|ABK76571.1| RecA [Bacillus coahuilensis]
 gi|118185920|gb|ABK76573.1| RecA [Bacillus coahuilensis]
          Length = 177

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 120/177 (67%), Positives = 148/177 (83%), Gaps = 2/177 (1%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           AL QI++ +GKG+IM+LG Q      I  +SSGS+ LD ALG+GG+P+GRIVEIYGPESS
Sbjct: 3   ALKQIEKQFGKGSIMKLGEQQD--RKISTISSGSVTLDTALGVGGYPRGRIVEIYGPESS 60

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTT+ALH IA+ Q  GG  AF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI +
Sbjct: 61  GKTTVALHAIAEVQAQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAE 120

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
            LVRSGAVDI+VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I++SK 
Sbjct: 121 ALVRSGAVDILVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAINKSKT 177


>gi|29652052|gb|AAO87688.1| RecA [Listeria monocytogenes]
          Length = 175

 Score =  244 bits (623), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 117/177 (66%), Positives = 147/177 (83%), Gaps = 2/177 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +F
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIF 175


>gi|33087873|gb|AAP93067.1| recombination protein A [Yersinia rohdei]
          Length = 175

 Score =  244 bits (623), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 118/177 (66%), Positives = 145/177 (81%), Gaps = 2/177 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I
Sbjct: 59  AAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVI 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           ++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ+RMK
Sbjct: 119 IVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQIRMK 175


>gi|33087785|gb|AAP93023.1| recombination protein A [Yersinia bercovieri ATCC 43970]
          Length = 175

 Score =  244 bits (623), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 118/177 (66%), Positives = 145/177 (81%), Gaps = 2/177 (1%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           +I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ+R
Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQIR 175


>gi|33087877|gb|AAP93069.1| recombination protein A [Yersinia rohdei]
          Length = 178

 Score =  244 bits (623), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 120/177 (67%), Positives = 146/177 (82%), Gaps = 2/177 (1%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIY
Sbjct: 2   KALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQA
Sbjct: 60  GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           LEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 120 LEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 176


>gi|324962820|gb|ADY62491.1| recombinase protein A [Agrobacterium sp. CCNWSX662]
          Length = 146

 Score =  244 bits (623), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 119/147 (80%), Positives = 134/147 (91%), Gaps = 1/147 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LGS  ++ E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK 
Sbjct: 1   LGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKK 59

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGEQALEITD LVRSGAVD++V+DSV
Sbjct: 60  GGICAFVDAEHALDPVYARKLGVDLQGLLISQPDTGEQALEITDTLVRSGAVDVLVVDSV 119

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQ 181
           AALTPRAEIEG+MG+SLPG+QARLMSQ
Sbjct: 120 AALTPRAEIEGEMGDSLPGLQARLMSQ 146


>gi|118185918|gb|ABK76572.1| RecA [Bacillus coahuilensis m4-4]
          Length = 177

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 120/176 (68%), Positives = 148/176 (84%), Gaps = 2/176 (1%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           AL QI++ +GKG+IM+LG Q      I  +SSGS+ LD ALG+GG+P+GRIVEIYGPESS
Sbjct: 3   ALKQIEKQFGKGSIMKLGEQQD--RKISTISSGSVTLDTALGVGGYPRGRIVEIYGPESS 60

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTT+ALH IA+ Q  GG  AF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI +
Sbjct: 61  GKTTVALHAIAEVQAQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAE 120

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
            LVRSGAVDI+VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I++SK
Sbjct: 121 ALVRSGAVDILVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAINKSK 176


>gi|29652023|gb|AAO87674.1| RecA [Listeria monocytogenes]
          Length = 172

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 117/174 (67%), Positives = 145/174 (83%), Gaps = 2/174 (1%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA+
Sbjct: 1   SIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRSGAVD++V
Sbjct: 59  VQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           IDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+R
Sbjct: 119 IDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIR 172


>gi|226903664|gb|ACO90395.1| RecA [Agrobacterium tumefaciens]
          Length = 149

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 119/150 (79%), Positives = 137/150 (91%), Gaps = 1/150 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+ V+GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTT
Sbjct: 1   IEPVFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LAL TIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDTGEQALEITD LVR
Sbjct: 60  LALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDTGEQALEITDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           SGAVD++V+DSVAALTPRAEIEG+MG+SLP
Sbjct: 120 SGAVDVLVVDSVAALTPRAEIEGEMGDSLP 149


>gi|329666364|gb|AEB96233.1| recombinase A [Rhizobium sp. CCNWSX0914]
          Length = 145

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 119/146 (81%), Positives = 134/146 (91%), Gaps = 1/146 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG+IM+LGS  ++ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTT
Sbjct: 1   IERAFGKGSIMKLGSNENVIE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVR
Sbjct: 60  LALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMG 168
           SGAVD++V+DSVAALTPRAEIEG+MG
Sbjct: 120 SGAVDVLVVDSVAALTPRAEIEGEMG 145


>gi|325651053|emb|CBY89348.1| RecA protein [Bradyrhizobium sp. R-46211=t424]
          Length = 156

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 115/157 (73%), Positives = 138/157 (87%), Gaps = 1/157 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           +R +GKG++M+LG      + +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTL
Sbjct: 1   ERSFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRS
Sbjct: 60  ALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           GAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMS
Sbjct: 120 GAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMS 156


>gi|291246090|gb|ADD85173.1| RecA [Borrelia duttonii]
          Length = 216

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 116/215 (53%), Positives = 166/215 (77%), Gaps = 2/215 (0%)

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +  L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAALTP+AEI+G+MG++  G+QARL
Sbjct: 2   INELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALTPQAEIDGEMGDTQIGLQARL 61

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MS+ALRK+T+ +S+S   ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V  
Sbjct: 62  MSKALRKITAILSKSNTCIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKVEQ 121

Query: 239 I--KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
           +     D++ GN+ RVKVVKNK+A PF++ E  + +G+GIS    ++D  +K ++V KSG
Sbjct: 122 VIGSSSDNVIGNKIRVKVVKNKVAPPFRKAELIVYFGKGISREASILDAAIKYNLVQKSG 181

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLL 331
           +W++     LGQGREN   +L +   +A  +E+ L
Sbjct: 182 SWYAMGDDNLGQGRENVIEYLFKEKALANELENKL 216


>gi|306569709|gb|ADN03349.1| RecA [Bradyrhizobium liaoningense]
          Length = 144

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 115/144 (79%), Positives = 133/144 (92%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD
Sbjct: 1   SSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG
Sbjct: 61  PVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISR 192
           ++LPG+Q RLMSQAL KLT+SI++
Sbjct: 121 DALPGLQVRLMSQALLKLTASINK 144


>gi|212286455|dbj|BAG82880.1| RecA protein [Rhizobium sp. Sb1-Nf1]
 gi|212286463|dbj|BAG82883.1| RecA protein [Rhizobium sp. Sb1-Nf13]
 gi|212286473|dbj|BAG82887.1| RecA protein [Rhizobium sp. Sb2-YG8]
 gi|212286478|dbj|BAG82889.1| RecA protein [Rhizobium sp. Sl-YG3]
 gi|212286481|dbj|BAG82890.1| RecA protein [Rhizobium sp. Sb2-Nf17]
 gi|212286491|dbj|BAG82894.1| RecA protein [Rhizobium sp. Sl-Nf13]
          Length = 145

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 118/146 (80%), Positives = 134/146 (91%), Gaps = 1/146 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARL 178
           SVAALTPRAEIEG+MG+SLPG+QARL
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARL 145


>gi|167554602|dbj|BAG07000.1| recombinaseA [Leuconostoc citreum]
          Length = 164

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 116/164 (70%), Positives = 139/164 (84%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG+PKGRI+EIYGPESSGKTTLALH +A+ QK GGT A++DAE+ALD  Y
Sbjct: 1   SVKLDVALGVGGYPKGRIIEIYGPESSGKTTLALHAVAEVQKAGGTAAYIDAENALDVKY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A  LGV    LL+SQPDTGEQ LEI D LV+SGAVDIIV+DSVAAL PRAEIEG+MG+S 
Sbjct: 61  AEALGVQKDELLLSQPDTGEQGLEIADALVQSGAVDIIVVDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            G+QARLMSQALRKL  +++R+  I +FINQ+R KIGVMFG+PE
Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGVMFGNPE 164


>gi|160375155|gb|ABX38949.1| recombinase protein A [Mesorhizobium caraganae]
          Length = 148

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 115/149 (77%), Positives = 135/149 (90%), Gaps = 1/149 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           +R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTL
Sbjct: 1   ERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRS
Sbjct: 60  ALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           GA+D++V+DSVAALTPRAEIEG+MG+SLP
Sbjct: 120 GAIDVLVVDSVAALTPRAEIEGEMGDSLP 148


>gi|29652074|gb|AAO87699.1| RecA [Listeria monocytogenes]
          Length = 172

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 117/174 (67%), Positives = 145/174 (83%), Gaps = 2/174 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA
Sbjct: 1   GSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRSGAVD++
Sbjct: 59  EVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDML 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+
Sbjct: 119 VIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQI 172


>gi|167554606|dbj|BAG07002.1| recombinaseA [Leuconostoc lactis]
          Length = 164

 Score =  243 bits (621), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 116/164 (70%), Positives = 139/164 (84%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG+PKGRI+EIYGPESSGKTTLALH +A+ QK GGT A++DAE+ALD  Y
Sbjct: 1   SVKLDVALGVGGYPKGRIIEIYGPESSGKTTLALHAVAEVQKAGGTAAYIDAENALDVKY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A  LGV    LL+SQPDTGEQ LEI D LV+SGAVDIIV+DSVAAL PRAEIEG+MG+S 
Sbjct: 61  AEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDIIVVDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            G+QARLMSQALRKL  +++R+  I +FINQ+R KIGVMFG+PE
Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGVMFGNPE 164


>gi|33087847|gb|AAP93054.1| recombination protein A [Yersinia kristensenii]
          Length = 176

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 117/176 (66%), Positives = 144/176 (81%), Gaps = 2/176 (1%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 3   FGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQ 60

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAV
Sbjct: 61  VIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAV 120

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           D+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ
Sbjct: 121 DVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQ 176


>gi|212286468|dbj|BAG82885.1| RecA protein [Rhizobium sp. Sb1-Nf19]
          Length = 145

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 118/146 (80%), Positives = 133/146 (91%), Gaps = 1/146 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS   + E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNEHVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARL 178
           SVAALTPRAEIEG+MG+SLPG+QARL
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARL 145


>gi|33087853|gb|AAP93057.1| recombination protein A [Yersinia mollaretii ATCC 43969]
          Length = 174

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 117/176 (66%), Positives = 144/176 (81%), Gaps = 2/176 (1%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQ 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAV
Sbjct: 59  VIAAAQRAGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAV 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           D+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ
Sbjct: 119 DVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQ 174


>gi|329666362|gb|AEB96232.1| recombinase A [Rhizobium sp. CCNWSX0906]
          Length = 145

 Score =  243 bits (620), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 119/146 (81%), Positives = 134/146 (91%), Gaps = 1/146 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG+IM+LGS  ++ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTT
Sbjct: 1   IERSFGKGSIMKLGSNENVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVR
Sbjct: 60  LALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMG 168
           SGAVD++V+DSVAALTPRAEIEG+MG
Sbjct: 120 SGAVDVLVVDSVAALTPRAEIEGEMG 145


>gi|33087883|gb|AAP93072.1| recombination protein A [Yersinia ruckeri]
          Length = 174

 Score =  243 bits (620), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 118/176 (67%), Positives = 144/176 (81%), Gaps = 2/176 (1%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKGAIM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGAIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           +I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ+
Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQI 174


>gi|290795163|gb|ADD64596.1| RecA recombinase [Vibrio splendidus]
          Length = 172

 Score =  243 bits (620), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 117/174 (67%), Positives = 145/174 (83%), Gaps = 2/174 (1%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQP+TGEQALEI D L RSGA+D
Sbjct: 59  IAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPNTGEQALEICDALARSGAID 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           ++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FIN
Sbjct: 119 VLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFIN 172


>gi|309274206|gb|ADO63747.1| recombinase A [Pseudomonas cuatrocienegasensis]
          Length = 155

 Score =  243 bits (619), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 112/155 (72%), Positives = 138/155 (89%)

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GV++ +LL+SQPDTGEQALEITDMLVRS AVD+IV+DSVAAL P+AEIEG+MG+   G+Q
Sbjct: 1   GVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIVVDSVAALVPKAEIEGEMGDMHVGLQ 60

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           ARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR
Sbjct: 61  ARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRR 120

Query: 236 VGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
            G++K+ D + G++TRVKVVKNK+A PF+Q EF I
Sbjct: 121 TGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQI 155


>gi|10444892|gb|AAG16493.1| RecA [Helicobacter pylori]
 gi|10444924|gb|AAG16509.1| RecA [Helicobacter pylori]
 gi|10444950|gb|AAG16522.1| RecA [Helicobacter pylori]
 gi|10444954|gb|AAG16524.1| RecA [Helicobacter pylori]
 gi|10444962|gb|AAG16528.1| RecA [Helicobacter pylori]
 gi|10444980|gb|AAG16537.1| RecA [Helicobacter pylori]
 gi|10444996|gb|AAG16545.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  243 bits (619), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 111/174 (63%), Positives = 142/174 (81%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120

Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ S+K  +   GN+ + KVVKN
Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIASLKQNEQHIGNRAKAKVVKN 174


>gi|197295649|gb|ACH58562.1| recombinase A [Erwinia aphidicola]
          Length = 161

 Score =  243 bits (619), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 111/156 (71%), Positives = 137/156 (87%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 5   IASAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 64

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKI
Sbjct: 65  VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNSSTLLIFINQIRMKI 124

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           GVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D
Sbjct: 125 GVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGD 160


>gi|167554594|dbj|BAG06996.1| recombinaseA [Leuconostoc gasicomitatum]
          Length = 164

 Score =  243 bits (619), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 115/164 (70%), Positives = 139/164 (84%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG+PKGRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  Y
Sbjct: 1   SVKLDVALGVGGYPKGRIIEVYGPESSGKTTIALHAVAEVQKAGGTAAYIDAENALDVKY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A  LGV    LL+SQPDTGEQ LEI D LV+SGAVDIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AEALGVQKDELLLSQPDTGEQGLEIADALVQSGAVDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            G+QARLMSQALRKL  +++R+  I +FINQ+R KIGVMFG+PE
Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGVMFGNPE 164


>gi|10444900|gb|AAG16497.1| RecA [Helicobacter pylori]
 gi|10444910|gb|AAG16502.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  243 bits (619), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 111/174 (63%), Positives = 142/174 (81%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120

Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKIG+  +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+ + KVVKN
Sbjct: 121 MKIGMTGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKN 174


>gi|160375112|gb|ABX38942.1| recombinase protein A [Mesorhizobium caraganae]
          Length = 148

 Score =  243 bits (619), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 116/149 (77%), Positives = 135/149 (90%), Gaps = 1/149 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRIVEIY
Sbjct: 1   KALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIVEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQA
Sbjct: 60  GPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           LEI D LVRSGA+D++V+DSVAALTPRAE
Sbjct: 120 LEICDTLVRSGAIDVLVVDSVAALTPRAE 148


>gi|212286460|dbj|BAG82882.1| RecA protein [Rhizobium sp. Sb1-Nf2]
          Length = 145

 Score =  243 bits (619), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 117/146 (80%), Positives = 134/146 (91%), Gaps = 1/146 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YAR+LGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARRLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARL 178
           SVAALTPRAEIEG+MG+SLPG+QARL
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARL 145


>gi|167554614|dbj|BAG07006.1| recombinaseA [Leuconostoc carnosum]
          Length = 164

 Score =  243 bits (619), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 115/164 (70%), Positives = 139/164 (84%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG+PKGRI+EIYGPESSGKTTLALH +A+ QK GGT A++DAE+ALD  Y
Sbjct: 1   SVKLDVALGVGGYPKGRIIEIYGPESSGKTTLALHAVAEVQKAGGTAAYIDAENALDVKY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A  LG+    LL+SQPDTGEQ LEI D LV+SGAVDIIVIDSVAAL PRAEIEG+MG++ 
Sbjct: 61  AEALGIHKDELLLSQPDTGEQGLEIADALVQSGAVDIIVIDSVAALVPRAEIEGEMGDAH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            G+QARLMSQALRKL  +++R+  I +FINQ+R KIGVMFG+PE
Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGVMFGNPE 164


>gi|10444988|gb|AAG16541.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  242 bits (618), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 111/174 (63%), Positives = 142/174 (81%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120

Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKIG+M +GSPETTTGGNALKFY+SVR+DI R+ ++K  +   GN+ + KVVKN
Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDITRIAALKQNEQHIGNRAKAKVVKN 174


>gi|325650997|emb|CBY89320.1| RecA protein [Bradyrhizobium japonicum]
 gi|325650999|emb|CBY89321.1| RecA protein [Bradyrhizobium japonicum]
 gi|325651003|emb|CBY89323.1| RecA protein [Bradyrhizobium japonicum]
 gi|325651005|emb|CBY89324.1| RecA protein [Bradyrhizobium japonicum]
 gi|325651007|emb|CBY89325.1| RecA protein [Bradyrhizobium japonicum]
 gi|325651009|emb|CBY89326.1| RecA protein [Bradyrhizobium japonicum]
 gi|325651013|emb|CBY89328.1| RecA protein [Bradyrhizobium japonicum]
 gi|325651021|emb|CBY89332.1| RecA protein [Bradyrhizobium japonicum]
 gi|325651037|emb|CBY89340.1| RecA protein [Bradyrhizobium japonicum]
          Length = 153

 Score =  242 bits (618), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 114/154 (74%), Positives = 137/154 (88%), Gaps = 1/154 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG      + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           D++V+DSVAAL P+AE+EG+MG++LPG+QARLMS
Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMS 153


>gi|5924000|emb|CAB56532.1| RecA protein [Frankia sp. AVN17]
          Length = 169

 Score =  242 bits (618), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 117/166 (70%), Positives = 137/166 (82%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           +A +Q  GG  AF+DAEHALD  YA KLGVD   LL+SQPDTGEQALEI DMLVRSGA+D
Sbjct: 3   VANAQAAGGIAAFIDAEHALDPEYAGKLGVDTDALLVSQPDTGEQALEIADMLVRSGALD 62

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           IIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KI
Sbjct: 63  IIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALANSGTTAIFINQLREKI 122

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
           GVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+TRVK
Sbjct: 123 GVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGAEAVGNRTRVK 168


>gi|212286551|dbj|BAG82918.1| RecA protein [Rhizobium sp. 28949]
          Length = 145

 Score =  242 bits (618), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 117/146 (80%), Positives = 133/146 (91%), Gaps = 1/146 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  ++ E IE VS+GSL LDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENVVE-IETVSTGSLSLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL NLLISQPDTGEQALEITD LVRSGAVD++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLHNLLISQPDTGEQALEITDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARL 178
           SVAALTPRAEIEG+MG+SLPG+QARL
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARL 145


>gi|5002559|emb|CAB44340.1| RecA protein [Frankia sp.]
          Length = 170

 Score =  242 bits (618), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 115/170 (67%), Positives = 138/170 (81%)

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
           H +A +Q  GG  AF+DAEHALD  YA KLGVD   LL+SQPDTGEQALEI DML+RSGA
Sbjct: 1   HAVANAQAAGGIAAFIDAEHALDPEYAGKLGVDTDALLVSQPDTGEQALEIADMLIRSGA 60

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D+IVIDSVAAL PRAEIEG+MG+S  G+QA LMSQALRK+T +++ S    +FINQ+R 
Sbjct: 61  LDVIVIDSVAALVPRAEIEGEMGDSHVGLQATLMSQALRKITGALANSGTTAIFINQLRE 120

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           K+GVMFGSPETTTGG ALKFY+SVRLD+ R+ ++KD     GN+TRVKVV
Sbjct: 121 KVGVMFGSPETTTGGKALKFYASVRLDVCRIETLKDSTEAVGNRTRVKVV 170


>gi|77557434|gb|ABB00011.1| recombination protein A [Bradyrhizobium sp. CCBAU 23151]
          Length = 146

 Score =  242 bits (618), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 112/141 (79%), Positives = 130/141 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE
Sbjct: 6   VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 65

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 66  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 125

Query: 165 GDMGESLPGMQARLMSQALRK 185
           G+MG++LPG+QARLMSQALRK
Sbjct: 126 GEMGDALPGLQARLMSQALRK 146


>gi|212286506|dbj|BAG82900.1| RecA protein [Rhizobium sp. Pt2-S11]
          Length = 145

 Score =  242 bits (618), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 117/146 (80%), Positives = 134/146 (91%), Gaps = 1/146 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  ++ + IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENVVD-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARL 178
           SVAALTPRAEIEG+MG+SLPG+QARL
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARL 145


>gi|145577853|gb|ABP87377.1| RecA [Vibrio sp. MSSRF10]
          Length = 170

 Score =  242 bits (618), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 111/160 (69%), Positives = 138/160 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 11  VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAE 70

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGVD++ LL+SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIE
Sbjct: 71  HALDPVYAKKLGVDIEALLVSQPDTGEQALEICDALARSGAIDVMVIDSVAALTPKAEIE 130

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+R
Sbjct: 131 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIR 170


>gi|10444916|gb|AAG16505.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  242 bits (618), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 111/174 (63%), Positives = 142/174 (81%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    LVFINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIR 120

Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+ + KVVKN
Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKN 174


>gi|325651015|emb|CBY89329.1| RecA protein [Bradyrhizobium japonicum]
          Length = 155

 Score =  242 bits (618), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 114/154 (74%), Positives = 137/154 (88%), Gaps = 1/154 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG      + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH
Sbjct: 3   FGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 61

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 62  TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 121

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           D++V+DSVAAL P+AE+EG+MG++LPG+QARLMS
Sbjct: 122 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMS 155


>gi|212286516|dbj|BAG82904.1| RecA protein [Rhizobium sp. Cg-A3]
          Length = 145

 Score =  242 bits (618), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 119/146 (81%), Positives = 133/146 (91%), Gaps = 1/146 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS   I E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA+SQ
Sbjct: 1   MKLGSNERIVE-IEQVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAESQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARL 178
           SVAALTPRAEIEG+MG++LPG+QARL
Sbjct: 120 SVAALTPRAEIEGEMGDNLPGLQARL 145


>gi|33087863|gb|AAP93062.1| recombination protein A [Yersinia mollaretii]
          Length = 169

 Score =  242 bits (618), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 113/163 (69%), Positives = 137/163 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 7   VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRAGKTCAFIDAE 66

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIE
Sbjct: 67  HALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIE 126

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           G++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ+RMKI
Sbjct: 127 GEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQIRMKI 169


>gi|167554610|dbj|BAG07004.1| recombinaseA [Leuconostoc inhae]
          Length = 164

 Score =  242 bits (618), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 114/164 (69%), Positives = 139/164 (84%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG+PKGRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  Y
Sbjct: 1   SVKLDVALGVGGYPKGRIIEVYGPESSGKTTIALHAVAEVQKAGGTAAYIDAENALDVKY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A  LGV    LL+SQPDTGEQ LEI D LV+SGAVDIIV+DSVAAL PRAEIEG+MG+S 
Sbjct: 61  AEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDIIVVDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            G+QARLMSQALRKL  +++R+  I +FINQ+R KIGVMFG+PE
Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGVMFGNPE 164


>gi|167554598|dbj|BAG06998.1| recombinaseA [Leuconostoc gelidum]
          Length = 164

 Score =  242 bits (618), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 114/164 (69%), Positives = 139/164 (84%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG+PKGRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  Y
Sbjct: 1   SVKLDVALGVGGYPKGRIIEVYGPESSGKTTIALHAVAEVQKAGGTAAYIDAENALDVKY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A  LGV    LL+SQPDTGEQ LEI D LV+SGAVDI+VIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDIVVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            G+QARLMSQALRKL  +++R+  I +FINQ+R KIGVMFG+PE
Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGVMFGNPE 164


>gi|251829623|gb|ACT21190.1| recombination repair protein [Vibrio sp. HHS02]
          Length = 153

 Score =  242 bits (617), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 111/153 (72%), Positives = 136/153 (88%)

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEI
Sbjct: 1   EHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEI 60

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 61  EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNAL 120

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           KFY+SVRLDIRR GSIK+ D   GN+TR+KVVK
Sbjct: 121 KFYASVRLDIRRTGSIKEGDEFVGNETRIKVVK 153


>gi|325650995|emb|CBY89319.1| RecA protein [Bradyrhizobium canariense]
          Length = 153

 Score =  242 bits (617), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 115/154 (74%), Positives = 136/154 (88%), Gaps = 1/154 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG      + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           D++VIDSVAAL P+AE+EG+MG++LPG+QARLMS
Sbjct: 120 DVLVIDSVAALVPKAELEGEMGDALPGLQARLMS 153


>gi|10444858|gb|AAG16476.1| RecA [Helicobacter pylori]
 gi|10444912|gb|AAG16503.1| RecA [Helicobacter pylori]
 gi|10444952|gb|AAG16523.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  242 bits (617), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 110/174 (63%), Positives = 142/174 (81%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTQNLLVSQPSTGEEALEILETITRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120

Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+ + KVVKN
Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKN 174


>gi|168805230|gb|ACA28697.1| recombinase protein A [Mesorhizobium septentrionale]
 gi|168805232|gb|ACA28698.1| recombinase protein A [Mesorhizobium amorphae]
          Length = 162

 Score =  242 bits (617), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 124/160 (77%), Positives = 145/160 (90%), Gaps = 1/160 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 4   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 63  VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           GEQALEI D LVRSGA+D++V+ SVAALTPRAEIEG+MG+
Sbjct: 123 GEQALEICDTLVRSGAIDVLVVVSVAALTPRAEIEGEMGD 162


>gi|325651043|emb|CBY89343.1| RecA protein [Bradyrhizobium sp. R-45657=978T2]
          Length = 155

 Score =  241 bits (616), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 115/154 (74%), Positives = 136/154 (88%), Gaps = 1/154 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG      + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH
Sbjct: 3   FGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 61

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 62  TVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 121

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           D++VIDSVAAL P+AE+EG+MG++LPG+QARLMS
Sbjct: 122 DVLVIDSVAALVPKAELEGEMGDALPGLQARLMS 155


>gi|325651001|emb|CBY89322.1| RecA protein [Bradyrhizobium japonicum]
          Length = 153

 Score =  241 bits (616), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 114/154 (74%), Positives = 136/154 (88%), Gaps = 1/154 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSMX-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           D++V+DSVAAL P+AE+EG+MG++LPG+QARLMS
Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMS 153


>gi|10444846|gb|AAG16470.1| RecA [Helicobacter pylori]
 gi|10444850|gb|AAG16472.1| RecA [Helicobacter pylori]
 gi|10444852|gb|AAG16473.1| RecA [Helicobacter pylori]
 gi|10444856|gb|AAG16475.1| RecA [Helicobacter pylori]
 gi|10444872|gb|AAG16483.1| RecA [Helicobacter pylori]
 gi|10444876|gb|AAG16485.1| RecA [Helicobacter pylori]
 gi|10444882|gb|AAG16488.1| RecA [Helicobacter pylori]
 gi|10444894|gb|AAG16494.1| RecA [Helicobacter pylori]
 gi|10444896|gb|AAG16495.1| RecA [Helicobacter pylori]
 gi|10444938|gb|AAG16516.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  241 bits (616), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 110/174 (63%), Positives = 142/174 (81%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120

Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+ + KVVKN
Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKN 174


>gi|29652060|gb|AAO87692.1| RecA [Listeria monocytogenes]
 gi|29652146|gb|AAO87734.1| RecA [Listeria monocytogenes]
          Length = 174

 Score =  241 bits (616), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 116/176 (65%), Positives = 146/176 (82%), Gaps = 2/176 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAI 174


>gi|9908865|emb|CAC04273.1| RecA protein [Azorhizobium caulinodans]
          Length = 147

 Score =  241 bits (616), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 116/148 (78%), Positives = 134/148 (90%), Gaps = 1/148 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG +  + E +E +SSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHTIA++QK 
Sbjct: 1   LGQKRQVME-VETISSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTIAEAQKK 59

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GGTCAF+DAEHALD IYARKLGV+L +LLISQPD GEQALEI D LVRSGA+D++V+DSV
Sbjct: 60  GGTCAFIDAEHALDPIYARKLGVNLDDLLISQPDAGEQALEIADTLVRSGAIDVLVVDSV 119

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQA 182
           AALTPRAE++G+MG++ PGMQARLMSQA
Sbjct: 120 AALTPRAELDGEMGDNQPGMQARLMSQA 147


>gi|77557436|gb|ABB00012.1| recombination protein A [Bradyrhizobium sp. CCBAU 43142]
          Length = 149

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 111/141 (78%), Positives = 130/141 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +SSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE
Sbjct: 9   VETISSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 68

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 69  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 128

Query: 165 GDMGESLPGMQARLMSQALRK 185
           G+MG++LPG+QARLMSQALRK
Sbjct: 129 GEMGDALPGLQARLMSQALRK 149


>gi|29652086|gb|AAO87705.1| RecA [Listeria monocytogenes]
          Length = 171

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 116/172 (67%), Positives = 143/172 (83%), Gaps = 2/172 (1%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA+ 
Sbjct: 2   IMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEV 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRSGAVD++VI
Sbjct: 60  QAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLVI 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+
Sbjct: 120 DSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQI 171


>gi|222544081|gb|ACM66901.1| recombinase A [Sinorhizobium xinjiangense]
          Length = 145

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 118/146 (80%), Positives = 133/146 (91%), Gaps = 1/146 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTT
Sbjct: 1   IERAFGKGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVR
Sbjct: 60  LALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMG 168
           SGA+D++V+DSVAAL PRAEIEG+MG
Sbjct: 120 SGAIDVLVVDSVAALVPRAEIEGEMG 145


>gi|29652027|gb|AAO87676.1| RecA [Listeria monocytogenes]
          Length = 173

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 116/174 (66%), Positives = 145/174 (83%), Gaps = 2/174 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTI 172


>gi|29652009|gb|AAO87667.1| RecA [Listeria monocytogenes]
          Length = 164

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 113/162 (69%), Positives = 139/162 (85%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA+ Q  GGT AF+D
Sbjct: 3   QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEVQAQGGTAAFID 62

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRSGAVD++VIDSVAAL PRAE
Sbjct: 63  AEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLVIDSVAALVPRAE 122

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           IEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+R
Sbjct: 123 IEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIR 164


>gi|324962816|gb|ADY62489.1| recombinase protein A [Rhizobium yanglingense]
          Length = 133

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 115/133 (86%), Positives = 126/133 (94%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +Y
Sbjct: 1   SLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           ARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SL
Sbjct: 61  ARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSL 120

Query: 172 PGMQARLMSQALR 184
           PG+QARLMSQALR
Sbjct: 121 PGLQARLMSQALR 133


>gi|32345044|gb|AAM93532.1| RecA protein [Rickettsia typhi str. Wilmington]
          Length = 153

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 113/153 (73%), Positives = 134/153 (87%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALGIGG PKGRI+EI+GPESSGKTTL LH IA+SQK GGTCAF+DAEHALD  Y
Sbjct: 1   SLGLDIALGIGGVPKGRIIEIFGPESSGKTTLTLHLIAESQKNGGTCAFIDAEHALDPAY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+KLGV++  L+ISQPDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++ 
Sbjct: 61  AKKLGVNIDELIISQPDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQ 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              QARLMSQALRKLT+SI+R+ CI VFINQ+ 
Sbjct: 121 MASQARLMSQALRKLTASINRTNCITVFINQIE 153


>gi|148990151|ref|ZP_01821391.1| recombinase A [Streptococcus pneumoniae SP6-BS73]
 gi|147924545|gb|EDK75633.1| recombinase A [Streptococcus pneumoniae SP6-BS73]
          Length = 209

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 117/189 (61%), Positives = 153/189 (80%), Gaps = 2/189 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  EREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 195

Query: 191 SRSKCILVF 199
           +++K I  F
Sbjct: 196 NKTKTIAYF 204


>gi|10444904|gb|AAG16499.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 110/174 (63%), Positives = 142/174 (81%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTGEQAL+I + + RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALKILETITRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120

Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKIG+  +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+ + KVVKN
Sbjct: 121 MKIGMTGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKN 174


>gi|325651045|emb|CBY89344.1| RecA protein [Bradyrhizobium sp. R-46172=t240]
 gi|325651049|emb|CBY89346.1| RecA protein [Bradyrhizobium sp. R-46206=t384]
 gi|325651057|emb|CBY89350.1| RecA protein [Bradyrhizobium sp. R-46277=t668]
 gi|325651059|emb|CBY89351.1| RecA protein [Bradyrhizobium sp. R-46304=t779]
 gi|325651061|emb|CBY89352.1| RecA protein [Bradyrhizobium sp. R-46306=t782]
 gi|325651065|emb|CBY89354.1| RecA protein [Bradyrhizobium sp. R-46311=t792]
 gi|325651067|emb|CBY89355.1| RecA protein [Bradyrhizobium sp. R-46313=t795]
          Length = 152

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 115/153 (75%), Positives = 135/153 (88%), Gaps = 1/153 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG++M+LG      + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT
Sbjct: 1   GKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHT 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           +A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD
Sbjct: 60  VAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVD 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           ++VIDSVAAL P+AE+EG+MG++LPG+QARLMS
Sbjct: 120 VLVIDSVAALVPKAELEGEMGDALPGLQARLMS 152


>gi|33087869|gb|AAP93065.1| recombination protein A [Yersinia rohdei]
          Length = 173

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 116/175 (66%), Positives = 143/175 (81%), Gaps = 2/175 (1%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQ 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAV
Sbjct: 59  VIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAV 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           D+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FIN
Sbjct: 119 DVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFIN 173


>gi|212286486|dbj|BAG82892.1| RecA protein [Rhizobium sp. Sl-Nf10]
          Length = 145

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 116/146 (79%), Positives = 133/146 (91%), Gaps = 1/146 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YAR+LGVDL+NL ISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARRLGVDLQNLWISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARL 178
           SVAALTPRAEIEG+MG+SLPG+QARL
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARL 145


>gi|253509212|gb|ACT31906.1| recombinase A [Rhizobium sp. CCNWGS0238]
 gi|309754584|gb|ADO86934.1| RecA [Rhizobium sp. CCNWQTX20]
          Length = 145

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 118/146 (80%), Positives = 133/146 (91%), Gaps = 1/146 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG + SI E IE + +GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL 
Sbjct: 1   FGKGSIMKLGGKDSIVE-IETIPTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG CAFVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+
Sbjct: 60  TIAEAQKKGGICAFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLP 172
           D++VIDSVAALTPRAEIEG+MG+SLP
Sbjct: 120 DVLVIDSVAALTPRAEIEGEMGDSLP 145


>gi|16612099|gb|AAL27453.1| RecA [Burkholderia cepacia]
          Length = 172

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 124/171 (72%), Positives = 149/171 (87%), Gaps = 1/171 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARL+SQ
Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLVSQ 172


>gi|29651973|gb|AAO87649.1| RecA [Listeria monocytogenes]
 gi|29652013|gb|AAO87669.1| RecA [Listeria monocytogenes]
          Length = 169

 Score =  240 bits (612), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 115/171 (67%), Positives = 142/171 (83%), Gaps = 2/171 (1%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA+ Q
Sbjct: 1   MKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEVQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
             GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRSGAVD++VID
Sbjct: 59  AQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           SVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+
Sbjct: 119 SVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQI 169


>gi|269929639|gb|ACZ53715.1| RecA protein [Lactobacillus reuteri]
          Length = 175

 Score =  240 bits (612), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 110/174 (63%), Positives = 146/174 (83%)

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA  LGV++ +LL+SQPD+GE+ LEI D+L+ SGAVD++++DSVAAL PRAEI+GDMG++
Sbjct: 2   YAEALGVNIDDLLLSQPDSGEEGLEIADVLISSGAVDLVIVDSVAALVPRAEIDGDMGDT 61

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
             G+QARLMSQALRKL+  I+++K I +FINQ+R K+GVMFG+PETTTGG ALKFYS++R
Sbjct: 62  HVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTTGGRALKFYSTIR 121

Query: 231 LDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           ++IRR   IK+   + GN+ +VK+VKNK+A PFK+ E DIMYGEGIS  GEL+D
Sbjct: 122 MEIRRAEQIKNGTDVIGNKAKVKIVKNKVAPPFKRCEVDIMYGEGISKTGELLD 175


>gi|10444874|gb|AAG16484.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  240 bits (612), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 109/174 (62%), Positives = 142/174 (81%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQP TGE+AL+I + + RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTGEEALKILETITRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120

Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+ + KVVKN
Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKN 174


>gi|253509208|gb|ACT31904.1| recombinase A [Rhizobium sp. CCNWGS0178]
          Length = 145

 Score =  240 bits (612), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 118/146 (80%), Positives = 133/146 (91%), Gaps = 1/146 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG + SI E IE + +GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL 
Sbjct: 1   FGKGSIMKLGGKDSIVE-IETIPTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG CAFVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+
Sbjct: 60  TIAEAQKKGGICAFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAL 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLP 172
           D++VIDSVAALTPRAEIEG+MG+SLP
Sbjct: 120 DVLVIDSVAALTPRAEIEGEMGDSLP 145


>gi|293337687|gb|ADE43119.1| recombinase A [Pseudomonas aeruginosa]
 gi|293337691|gb|ADE43121.1| recombinase A [Pseudomonas aeruginosa]
          Length = 158

 Score =  240 bits (612), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 109/154 (70%), Positives = 139/154 (90%)

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG++
Sbjct: 5   YACKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDA 64

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
             G+QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR
Sbjct: 65  HVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVR 124

Query: 231 LDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           LDIRR G++K+ D + G++TRVKVVKNK++ PF+
Sbjct: 125 LDIRRTGAVKEGDEVVGSETRVKVVKNKVSPPFR 158


>gi|160375163|gb|ABX38950.1| recombinase protein A [Mesorhizobium albiziae]
          Length = 147

 Score =  240 bits (612), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 113/148 (76%), Positives = 134/148 (90%), Gaps = 1/148 (0%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           R +GKG+IM+LG+   + E I  VS+GSLGLDIALG+GG P+GRI+EIYGPESSGKTT+A
Sbjct: 1   RAFGKGSIMRLGANEQVVE-IGTVSTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTMA 59

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSG
Sbjct: 60  LHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSG 119

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLP 172
           A+D++V+DSVAALTPRAEIEG+MG+SLP
Sbjct: 120 AIDVLVVDSVAALTPRAEIEGEMGDSLP 147


>gi|10444914|gb|AAG16504.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  240 bits (612), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 110/174 (63%), Positives = 141/174 (81%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQP TGE+ALEI +   RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETSTRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120

Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+ + KVVKN
Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKN 174


>gi|167554600|dbj|BAG06999.1| recombinaseA [Leuconostoc pseudomesenteroides]
          Length = 164

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 113/164 (68%), Positives = 139/164 (84%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LDIALG+GG+PKGRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  Y
Sbjct: 1   SVKLDIALGVGGYPKGRIIEVYGPESSGKTTIALHAVAEVQKQGGTAAYIDAENALDVKY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A  LGV    LL+SQPDTGEQ LEI D LV+SGAVD+IVIDSVAAL PRAEIEG+MG++ 
Sbjct: 61  AEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDMIVIDSVAALVPRAEIEGEMGDAH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            G+QARLMSQALRKL  +++R+  I +FINQ+R K+GVMFG+PE
Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPE 164


>gi|183585340|gb|ACC63984.1| recombinase [Clostridium perfringens]
 gi|183585342|gb|ACC63985.1| recombinase [Clostridium perfringens]
          Length = 158

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 109/157 (69%), Positives = 137/157 (87%)

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT +I++S C+++FINQ+R
Sbjct: 1   AIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGTINKSNCVVIFINQLR 60

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
            K+G+MFG+PETT GG ALKFY+SVR+DIRR+ SIK  D ITGN+TRVK+VKNK+A PFK
Sbjct: 61  EKVGIMFGNPETTPGGRALKFYASVRMDIRRIDSIKQGDGITGNRTRVKIVKNKVAPPFK 120

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
           Q EFDIMY EGIS  G ++D+GVK +IV KSGAWFS+
Sbjct: 121 QAEFDIMYNEGISKEGNIVDVGVKENIVQKSGAWFSY 157


>gi|269929427|gb|ACZ53609.1| RecA protein [Lactobacillus reuteri]
 gi|269929429|gb|ACZ53610.1| RecA protein [Lactobacillus reuteri]
 gi|269929431|gb|ACZ53611.1| RecA protein [Lactobacillus reuteri]
 gi|269929433|gb|ACZ53612.1| RecA protein [Lactobacillus reuteri]
 gi|269929435|gb|ACZ53613.1| RecA protein [Lactobacillus reuteri ATCC 53608]
 gi|269929437|gb|ACZ53614.1| RecA protein [Lactobacillus reuteri]
 gi|269929439|gb|ACZ53615.1| RecA protein [Lactobacillus reuteri]
 gi|269929441|gb|ACZ53616.1| RecA protein [Lactobacillus reuteri]
 gi|269929443|gb|ACZ53617.1| RecA protein [Lactobacillus reuteri]
 gi|269929445|gb|ACZ53618.1| RecA protein [Lactobacillus reuteri]
 gi|269929447|gb|ACZ53619.1| RecA protein [Lactobacillus reuteri]
 gi|269929449|gb|ACZ53620.1| RecA protein [Lactobacillus reuteri]
 gi|269929451|gb|ACZ53621.1| RecA protein [Lactobacillus reuteri]
 gi|269929453|gb|ACZ53622.1| RecA protein [Lactobacillus reuteri]
 gi|269929455|gb|ACZ53623.1| RecA protein [Lactobacillus reuteri]
 gi|269929457|gb|ACZ53624.1| RecA protein [Lactobacillus reuteri]
 gi|269929459|gb|ACZ53625.1| RecA protein [Lactobacillus reuteri]
 gi|269929461|gb|ACZ53626.1| RecA protein [Lactobacillus reuteri]
 gi|269929463|gb|ACZ53627.1| RecA protein [Lactobacillus reuteri]
 gi|269929465|gb|ACZ53628.1| RecA protein [Lactobacillus reuteri]
 gi|269929467|gb|ACZ53629.1| RecA protein [Lactobacillus reuteri]
 gi|269929469|gb|ACZ53630.1| RecA protein [Lactobacillus reuteri]
 gi|269929471|gb|ACZ53631.1| RecA protein [Lactobacillus reuteri]
 gi|269929473|gb|ACZ53632.1| RecA protein [Lactobacillus reuteri ATCC 53608]
 gi|269929475|gb|ACZ53633.1| RecA protein [Lactobacillus reuteri]
 gi|269929477|gb|ACZ53634.1| RecA protein [Lactobacillus reuteri]
 gi|269929479|gb|ACZ53635.1| RecA protein [Lactobacillus reuteri]
 gi|269929481|gb|ACZ53636.1| RecA protein [Lactobacillus reuteri]
 gi|269929483|gb|ACZ53637.1| RecA protein [Lactobacillus reuteri]
 gi|269929485|gb|ACZ53638.1| RecA protein [Lactobacillus reuteri]
 gi|269929487|gb|ACZ53639.1| RecA protein [Lactobacillus reuteri]
 gi|269929489|gb|ACZ53640.1| RecA protein [Lactobacillus reuteri]
 gi|269929491|gb|ACZ53641.1| RecA protein [Lactobacillus reuteri]
 gi|269929493|gb|ACZ53642.1| RecA protein [Lactobacillus reuteri]
 gi|269929495|gb|ACZ53643.1| RecA protein [Lactobacillus reuteri]
 gi|269929497|gb|ACZ53644.1| RecA protein [Lactobacillus reuteri]
 gi|269929499|gb|ACZ53645.1| RecA protein [Lactobacillus reuteri]
 gi|269929501|gb|ACZ53646.1| RecA protein [Lactobacillus reuteri]
 gi|269929503|gb|ACZ53647.1| RecA protein [Lactobacillus reuteri]
 gi|269929505|gb|ACZ53648.1| RecA protein [Lactobacillus reuteri]
 gi|269929507|gb|ACZ53649.1| RecA protein [Lactobacillus reuteri]
 gi|269929509|gb|ACZ53650.1| RecA protein [Lactobacillus reuteri]
 gi|269929511|gb|ACZ53651.1| RecA protein [Lactobacillus reuteri DSM 20016]
 gi|269929513|gb|ACZ53652.1| RecA protein [Lactobacillus reuteri]
 gi|269929515|gb|ACZ53653.1| RecA protein [Lactobacillus reuteri]
 gi|269929517|gb|ACZ53654.1| RecA protein [Lactobacillus reuteri]
 gi|269929519|gb|ACZ53655.1| RecA protein [Lactobacillus reuteri]
 gi|269929521|gb|ACZ53656.1| RecA protein [Lactobacillus reuteri]
 gi|269929523|gb|ACZ53657.1| RecA protein [Lactobacillus reuteri]
 gi|269929525|gb|ACZ53658.1| RecA protein [Lactobacillus reuteri]
 gi|269929527|gb|ACZ53659.1| RecA protein [Lactobacillus reuteri]
 gi|269929529|gb|ACZ53660.1| RecA protein [Lactobacillus reuteri]
 gi|269929531|gb|ACZ53661.1| RecA protein [Lactobacillus reuteri]
 gi|269929533|gb|ACZ53662.1| RecA protein [Lactobacillus reuteri]
 gi|269929535|gb|ACZ53663.1| RecA protein [Lactobacillus reuteri]
 gi|269929537|gb|ACZ53664.1| RecA protein [Lactobacillus reuteri]
 gi|269929539|gb|ACZ53665.1| RecA protein [Lactobacillus reuteri]
 gi|269929541|gb|ACZ53666.1| RecA protein [Lactobacillus reuteri]
 gi|269929543|gb|ACZ53667.1| RecA protein [Lactobacillus reuteri]
 gi|269929545|gb|ACZ53668.1| RecA protein [Lactobacillus reuteri]
 gi|269929547|gb|ACZ53669.1| RecA protein [Lactobacillus reuteri]
 gi|269929549|gb|ACZ53670.1| RecA protein [Lactobacillus reuteri]
 gi|269929551|gb|ACZ53671.1| RecA protein [Lactobacillus reuteri]
 gi|269929553|gb|ACZ53672.1| RecA protein [Lactobacillus reuteri]
 gi|269929555|gb|ACZ53673.1| RecA protein [Lactobacillus reuteri]
 gi|269929557|gb|ACZ53674.1| RecA protein [Lactobacillus reuteri]
 gi|269929559|gb|ACZ53675.1| RecA protein [Lactobacillus reuteri]
 gi|269929561|gb|ACZ53676.1| RecA protein [Lactobacillus reuteri]
 gi|269929563|gb|ACZ53677.1| RecA protein [Lactobacillus reuteri]
 gi|269929565|gb|ACZ53678.1| RecA protein [Lactobacillus reuteri]
 gi|269929567|gb|ACZ53679.1| RecA protein [Lactobacillus reuteri]
 gi|269929569|gb|ACZ53680.1| RecA protein [Lactobacillus reuteri]
 gi|269929571|gb|ACZ53681.1| RecA protein [Lactobacillus reuteri]
 gi|269929573|gb|ACZ53682.1| RecA protein [Lactobacillus reuteri]
 gi|269929575|gb|ACZ53683.1| RecA protein [Lactobacillus reuteri lpuph]
 gi|269929577|gb|ACZ53684.1| RecA protein [Lactobacillus reuteri]
 gi|269929579|gb|ACZ53685.1| RecA protein [Lactobacillus reuteri]
 gi|269929581|gb|ACZ53686.1| RecA protein [Lactobacillus reuteri]
 gi|269929583|gb|ACZ53687.1| RecA protein [Lactobacillus reuteri]
 gi|269929585|gb|ACZ53688.1| RecA protein [Lactobacillus reuteri]
 gi|269929587|gb|ACZ53689.1| RecA protein [Lactobacillus reuteri]
 gi|269929589|gb|ACZ53690.1| RecA protein [Lactobacillus reuteri]
 gi|269929591|gb|ACZ53691.1| RecA protein [Lactobacillus reuteri]
 gi|269929593|gb|ACZ53692.1| RecA protein [Lactobacillus reuteri]
 gi|269929595|gb|ACZ53693.1| RecA protein [Lactobacillus reuteri]
 gi|269929597|gb|ACZ53694.1| RecA protein [Lactobacillus reuteri mlc3]
 gi|269929599|gb|ACZ53695.1| RecA protein [Lactobacillus reuteri]
 gi|269929601|gb|ACZ53696.1| RecA protein [Lactobacillus reuteri]
 gi|269929603|gb|ACZ53697.1| RecA protein [Lactobacillus reuteri]
 gi|269929605|gb|ACZ53698.1| RecA protein [Lactobacillus reuteri]
 gi|269929607|gb|ACZ53699.1| RecA protein [Lactobacillus reuteri]
 gi|269929609|gb|ACZ53700.1| RecA protein [Lactobacillus reuteri]
 gi|269929611|gb|ACZ53701.1| RecA protein [Lactobacillus reuteri]
 gi|269929613|gb|ACZ53702.1| RecA protein [Lactobacillus reuteri]
 gi|269929615|gb|ACZ53703.1| RecA protein [Lactobacillus reuteri]
 gi|269929617|gb|ACZ53704.1| RecA protein [Lactobacillus reuteri]
 gi|269929619|gb|ACZ53705.1| RecA protein [Lactobacillus reuteri]
 gi|269929621|gb|ACZ53706.1| RecA protein [Lactobacillus reuteri]
 gi|269929623|gb|ACZ53707.1| RecA protein [Lactobacillus reuteri]
 gi|269929625|gb|ACZ53708.1| RecA protein [Lactobacillus reuteri]
 gi|269929627|gb|ACZ53709.1| RecA protein [Lactobacillus reuteri]
 gi|269929629|gb|ACZ53710.1| RecA protein [Lactobacillus reuteri]
 gi|269929631|gb|ACZ53711.1| RecA protein [Lactobacillus reuteri]
 gi|269929633|gb|ACZ53712.1| RecA protein [Lactobacillus reuteri]
 gi|269929635|gb|ACZ53713.1| RecA protein [Lactobacillus reuteri]
 gi|269929637|gb|ACZ53714.1| RecA protein [Lactobacillus reuteri]
 gi|269929641|gb|ACZ53716.1| RecA protein [Lactobacillus reuteri]
 gi|269929643|gb|ACZ53717.1| RecA protein [Lactobacillus reuteri]
 gi|269929645|gb|ACZ53718.1| RecA protein [Lactobacillus reuteri]
 gi|269929647|gb|ACZ53719.1| RecA protein [Lactobacillus reuteri]
 gi|269929649|gb|ACZ53720.1| RecA protein [Lactobacillus reuteri]
 gi|269929651|gb|ACZ53721.1| RecA protein [Lactobacillus reuteri]
 gi|269929653|gb|ACZ53722.1| RecA protein [Lactobacillus reuteri]
 gi|269929655|gb|ACZ53723.1| RecA protein [Lactobacillus reuteri]
 gi|269929657|gb|ACZ53724.1| RecA protein [Lactobacillus reuteri]
          Length = 175

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 110/174 (63%), Positives = 145/174 (83%)

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA  LGV++ +LL+SQPD+GE+ LEI D L+ SGAVD++++DSVAAL PRAEI+GDMG++
Sbjct: 2   YAEALGVNIDDLLLSQPDSGEEGLEIADALISSGAVDLVIVDSVAALVPRAEIDGDMGDT 61

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
             G+QARLMSQALRKL+  I+++K I +FINQ+R K+GVMFG+PETTTGG ALKFYS++R
Sbjct: 62  HVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTTGGRALKFYSTIR 121

Query: 231 LDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           ++IRR   IK+   + GN+ +VK+VKNK+A PFK+ E DIMYGEGIS  GEL+D
Sbjct: 122 MEIRRAEQIKNGTDVIGNKAKVKIVKNKVAPPFKRCEVDIMYGEGISKTGELLD 175


>gi|10444974|gb|AAG16534.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 110/174 (63%), Positives = 141/174 (81%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    LVFINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIR 120

Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKIG+  +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+ + KVVKN
Sbjct: 121 MKIGMTGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKN 174


>gi|33087799|gb|AAP93030.1| recombination protein A [Yersinia bercovieri]
          Length = 172

 Score =  239 bits (611), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 116/174 (66%), Positives = 142/174 (81%), Gaps = 2/174 (1%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQ 172


>gi|325305338|gb|ADZ06017.1| RecA [Aeromonas veronii bv. sobria]
          Length = 148

 Score =  239 bits (611), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 112/148 (75%), Positives = 134/148 (90%)

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIEG+M
Sbjct: 1   DPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEM 60

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNALKFY+
Sbjct: 61  GDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYA 120

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           SVRLDIRR+G+IK+ D + GN+TRVKVV
Sbjct: 121 SVRLDIRRIGAIKEGDEVVGNETRVKVV 148


>gi|90856163|gb|ABE01373.1| recombination protein A [Mesorhizobium mediterraneum]
 gi|90856169|gb|ABE01376.1| recombination protein A [Mesorhizobium mediterraneum]
 gi|90856183|gb|ABE01383.1| recombination protein A [Mesorhizobium mediterraneum]
 gi|90856189|gb|ABE01386.1| recombination protein A [Mesorhizobium mediterraneum]
 gi|90856195|gb|ABE01389.1| recombination protein A [Mesorhizobium tianshanense]
 gi|90856203|gb|ABE01393.1| recombination protein A [Mesorhizobium tianshanense]
 gi|90856209|gb|ABE01397.1| recombination protein A [Mesorhizobium septentrionale]
 gi|90856211|gb|ABE01398.1| recombination protein A [Mesorhizobium temperatum]
 gi|157931029|gb|ABW04740.1| recombination protein [Mesorhizobium loti]
          Length = 143

 Score =  239 bits (611), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 114/144 (79%), Positives = 131/144 (90%), Gaps = 1/144 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG+   + E IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK 
Sbjct: 1   LGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKK 59

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSV
Sbjct: 60  GGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSV 119

Query: 155 AALTPRAEIEGDMGESLPGMQARL 178
           AALTPRAEIEG+MG+SLPG+QARL
Sbjct: 120 AALTPRAEIEGEMGDSLPGLQARL 143


>gi|224139890|ref|XP_002323326.1| predicted protein [Populus trichocarpa]
 gi|222867956|gb|EEF05087.1| predicted protein [Populus trichocarpa]
          Length = 323

 Score =  239 bits (610), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 140/326 (42%), Positives = 210/326 (64%), Gaps = 11/326 (3%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEG--IEVVSSGSLGLDIALGIGGFPKGRI 69
           K  AL  AL+Q+   +G+ +++ L      F      V+S+GSL LD+ALGIGG PKGR+
Sbjct: 2   KDNALRLALTQLAGEFGRESMLSLQR---FFNSRRAPVISTGSLKLDLALGIGGLPKGRM 58

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYG E+SGKTTLALH I ++QK GG CA++D E+A+D +    +G++ +NLLIS PD 
Sbjct: 59  VEIYGKEASGKTTLALHIIKEAQKLGGYCAYLDVENAMDPLLPESMGINTENLLISHPDC 118

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
            E  L + D L +SG+VD+IV+DSVAAL P+ EI+  +G +   +Q+RLM+QALRK+  S
Sbjct: 119 AENLLSVVDTLTKSGSVDVIVVDSVAALVPQREIDTAVGGTFEDIQSRLMTQALRKINYS 178

Query: 190 ISRSKCILVFINQMR--MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           + +S+ +++F+NQ+R  +K G    + E T GGNALKFYS+VRL + R   +K +D ITG
Sbjct: 179 LCQSQTLIIFLNQVRKSLKSG---RAEEVTCGGNALKFYSAVRLRMIRTRLLKTEDRITG 235

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
                +VVKNK+A    + E +I +G G     E+++L  + S++ K G+ +    +  G
Sbjct: 236 LGVCAQVVKNKLAPAMTKAELEIQFGRGFCSESEVLELACEHSLIKKEGSSYVIGRKVFG 295

Query: 308 QGRENSKIFLRENIEIAENIESLLRQ 333
             R   + +L EN  + + I + LR+
Sbjct: 296 NERVAEQ-YLMENEGVHDQIVAKLRE 320


>gi|255586516|ref|XP_002533897.1| DNA repair protein reca, putative [Ricinus communis]
 gi|223526148|gb|EEF28487.1| DNA repair protein reca, putative [Ricinus communis]
          Length = 388

 Score =  239 bits (610), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 143/335 (42%), Positives = 218/335 (65%), Gaps = 12/335 (3%)

Query: 9   IVDKSKALEA------ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
           ++D S+A+E       AL +I   + + +++ L    S  +   V+S+GSL LD+ALGIG
Sbjct: 55  LIDDSEAMEKHNKLFLALKEISGEFCRESMLSLHRFFSSRQA-SVISTGSLKLDLALGIG 113

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G PKGR+VEIYG E+SGKTTLALH I ++QK GG CA++DAE+ALD      +GV+ +NL
Sbjct: 114 GLPKGRMVEIYGQEASGKTTLALHIIKEAQKCGGYCAYLDAENALDPSLVESMGVNTENL 173

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           LIS PD+ E  L + D L +SG+VD+IV+DSVAAL P+ E++  +G S    Q+R+MSQA
Sbjct: 174 LISPPDSAENLLSVVDTLTKSGSVDVIVVDSVAALVPQLELDTMLG-STEDRQSRIMSQA 232

Query: 183 LRKLTSSISRSKCILVFINQMR--MKIGVMFGS-PETTTGGNALKFYSSVRLDIRRVGSI 239
           +RK+  S+S+SK +++F+NQ+R  +K G   G   E T GGNALKFYS+VRL + R   +
Sbjct: 233 VRKINYSLSQSKTLIIFLNQVRANVKSGQGLGQVDEATCGGNALKFYSAVRLRMARKALL 292

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           K +D ITG +  V+VVKNK+A   K+ E  I +G G     E+++L  +  ++ + G+ +
Sbjct: 293 KTEDEITGLRVSVQVVKNKLAPAMKKAELGIQFGRGFCSESEVLELACEYGVIRQEGSTY 352

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
             + + +   +  ++ +L EN ++ + I   LR +
Sbjct: 353 CIE-EEVFSNKHAAEEYLAENYKVHDRIVRTLRTH 386


>gi|222544087|gb|ACM66904.1| recombinase A [Sinorhizobium meliloti]
          Length = 145

 Score =  239 bits (610), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 117/146 (80%), Positives = 133/146 (91%), Gaps = 1/146 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTT
Sbjct: 1   IERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVR
Sbjct: 60  LALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMG 168
           SGA+DI+VIDSVAAL PRAEIEG+MG
Sbjct: 120 SGAIDILVIDSVAALVPRAEIEGEMG 145


>gi|222544077|gb|ACM66899.1| recombinase A [Rhizobium gallicum]
 gi|222544079|gb|ACM66900.1| recombinase A [Rhizobium gallicum]
          Length = 145

 Score =  239 bits (610), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 116/146 (79%), Positives = 133/146 (91%), Gaps = 1/146 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG+IM+LGS  ++ E IE +S+GSL LDIALGIGG PKGRI+EIYGPESSGKTT
Sbjct: 1   IERSFGKGSIMKLGSNENVVE-IETISTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVR
Sbjct: 60  LALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMG 168
           SGAVD++V+DSVAALTPRAEIEG+MG
Sbjct: 120 SGAVDVLVVDSVAALTPRAEIEGEMG 145


>gi|213012380|gb|ACJ38756.1| recombination-repair protein [Vibrio chagasii]
          Length = 150

 Score =  239 bits (610), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 108/150 (72%), Positives = 134/150 (89%)

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+
Sbjct: 1   VSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAM 60

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D
Sbjct: 61  RKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGD 120

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
            I GN+TR+KVVKNK+A+PFKQ E  I+YG
Sbjct: 121 EIVGNETRIKVVKNKIAAPFKQAETQILYG 150


>gi|183585344|gb|ACC63986.1| recombinase [Clostridium perfringens]
          Length = 158

 Score =  239 bits (610), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 108/157 (68%), Positives = 137/157 (87%)

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT +I++S C+++FINQ+R
Sbjct: 1   AIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGTINKSNCVVIFINQLR 60

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
            K+G+MFG+PETT GG ALKFY+SVR+DIRR+ SIK  D ITGN+TRVK+VKNK+A PFK
Sbjct: 61  EKVGIMFGNPETTPGGRALKFYASVRMDIRRIDSIKQGDGITGNRTRVKIVKNKVAPPFK 120

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
           Q EFDIMY EGIS  G ++D+GVK +IV KSGAW+S+
Sbjct: 121 QAEFDIMYNEGISKEGNIVDVGVKENIVQKSGAWYSY 157


>gi|257812113|gb|ACV69924.1| RecA [Mesorhizobium robiniae]
          Length = 133

 Score =  239 bits (609), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 111/132 (84%), Positives = 126/132 (95%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD 
Sbjct: 2   TGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDP 61

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+
Sbjct: 62  VYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGD 121

Query: 170 SLPGMQARLMSQ 181
           SLPG+QARLMSQ
Sbjct: 122 SLPGLQARLMSQ 133


>gi|253509210|gb|ACT31905.1| recombinase A [Rhizobium sp. CCNWGS0187]
          Length = 145

 Score =  239 bits (609), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 117/146 (80%), Positives = 133/146 (91%), Gaps = 1/146 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG + SI E IE + +GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL 
Sbjct: 1   FGKGSIMKLGGKDSIVE-IETIPTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG CAFVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEI+D LVRSGA+
Sbjct: 60  TIAEAQKKGGICAFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEISDTLVRSGAI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLP 172
           D++VIDSVAALTPRAEIEG+MG+SLP
Sbjct: 120 DVLVIDSVAALTPRAEIEGEMGDSLP 145


>gi|22330951|ref|NP_187625.2| RECA3 (recA homolog 3); ATP binding / DNA binding / DNA-dependent
           ATPase/ nucleoside-triphosphatase/ nucleotide binding
           [Arabidopsis thaliana]
 gi|75158993|sp|Q8RY99|RECAM_ARATH RecName: Full=DNA repair protein recA homolog 2, mitochondrial;
           AltName: Full=Recombinase A homolog 2; Flags: Precursor
 gi|18996122|gb|AAL79768.1| RecA protein [Arabidopsis thaliana]
 gi|22531124|gb|AAM97066.1| putative RecA protein [Arabidopsis thaliana]
 gi|23198012|gb|AAN15533.1| putative RecA protein [Arabidopsis thaliana]
          Length = 389

 Score =  239 bits (609), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 135/327 (41%), Positives = 214/327 (65%), Gaps = 5/327 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + +K  AL  ALSQ+   + K + + L  +      + V+S+GSL LD+ALG+GG PKGR
Sbjct: 59  VAEKDTALHLALSQLSGDFDKDSKLSL-QRFYRKRRVSVISTGSLNLDLALGVGGLPKGR 117

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VE+YG E+SGKTTLALH I ++QK GG CA++DAE+A+D   A  +GV+ + LLIS+P 
Sbjct: 118 MVEVYGKEASGKTTLALHIIKEAQKLGGYCAYLDAENAMDPSLAESIGVNTEELLISRPS 177

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           + E+ L I D+L +SG+VD+IV+DSVAAL P+ E++  +GE     Q+R+M+QALRK+  
Sbjct: 178 SAEKMLNIVDVLTKSGSVDVIVVDSVAALAPQCELDAPVGERYRDTQSRIMTQALRKIHY 237

Query: 189 SISRSKCILVFINQMRMKIGVMFGSP---ETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           S+  S+ ++VF+NQ+R  +      P   E T GGNAL F++++RL + R G IK  + I
Sbjct: 238 SVGYSQTLIVFLNQVRSHVKSNMHFPHAEEVTCGGNALPFHAAIRLKMIRTGLIKTANKI 297

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           +G    V+VVKNK+A   K+ E  I +G G     E+++L  +  ++ + G  +  +G+ 
Sbjct: 298 SGLNVCVQVVKNKLAPGKKKSELGIHFGHGFYVEREVLELACEHGVILREGTSYFIEGEV 357

Query: 306 LGQGRENSKIFLRENIEIAENIESLLR 332
           + +G++ ++ +L EN E  + + ++LR
Sbjct: 358 I-EGKDAAEKYLVENKEALDTVVAILR 383


>gi|37695714|gb|AAR00388.1| RecA [Vibrio parahaemolyticus]
 gi|37695716|gb|AAR00389.1| RecA [Vibrio parahaemolyticus]
 gi|37695718|gb|AAR00390.1| RecA [Vibrio parahaemolyticus]
 gi|37695720|gb|AAR00391.1| RecA [Vibrio parahaemolyticus]
 gi|37695724|gb|AAR00393.1| RecA [Vibrio parahaemolyticus]
 gi|37695726|gb|AAR00394.1| RecA [Vibrio parahaemolyticus]
 gi|37695728|gb|AAR00395.1| RecA [Vibrio parahaemolyticus]
 gi|37695730|gb|AAR00396.1| RecA [Vibrio parahaemolyticus]
 gi|37695732|gb|AAR00397.1| RecA [Vibrio parahaemolyticus]
 gi|37695736|gb|AAR00399.1| RecA [Vibrio parahaemolyticus]
 gi|145952300|gb|ABP98973.1| RecA [Vibrio parahaemolyticus]
 gi|145952302|gb|ABP98974.1| RecA [Vibrio parahaemolyticus]
 gi|145952304|gb|ABP98975.1| RecA [Vibrio parahaemolyticus]
 gi|145952306|gb|ABP98976.1| RecA [Vibrio parahaemolyticus]
 gi|145952308|gb|ABP98977.1| RecA [Vibrio parahaemolyticus]
 gi|145952310|gb|ABP98978.1| RecA [Vibrio parahaemolyticus]
 gi|145952312|gb|ABP98979.1| RecA [Vibrio parahaemolyticus]
 gi|145952314|gb|ABP98980.1| RecA [Vibrio parahaemolyticus]
 gi|145952316|gb|ABP98981.1| RecA [Vibrio parahaemolyticus]
          Length = 150

 Score =  239 bits (609), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 107/149 (71%), Positives = 134/149 (89%)

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           + G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+D
Sbjct: 1   REGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVD 60

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG
Sbjct: 61  SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFG 120

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           +PETTTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 121 NPETTTGGNALKFYASVRLDIRRTGAIKE 149


>gi|10444922|gb|AAG16508.1| RecA [Helicobacter pylori]
 gi|10444948|gb|AAG16521.1| RecA [Helicobacter pylori]
 gi|10444960|gb|AAG16527.1| RecA [Helicobacter pylori]
 gi|10444984|gb|AAG16539.1| RecA [Helicobacter pylori]
 gi|10444986|gb|AAG16540.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  239 bits (609), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 109/174 (62%), Positives = 141/174 (81%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120

Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKIG+  +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+ + KVVKN
Sbjct: 121 MKIGMTGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKN 174


>gi|325651047|emb|CBY89345.1| RecA protein [Bradyrhizobium sp. R-46173=t242]
          Length = 151

 Score =  239 bits (609), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 114/152 (75%), Positives = 134/152 (88%), Gaps = 1/152 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG      + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+
Sbjct: 1   KGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTV 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD+
Sbjct: 60  AEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +VIDSVAAL P+AE+EG+MG++LPG+QARLMS
Sbjct: 120 LVIDSVAALVPKAELEGEMGDALPGLQARLMS 151


>gi|90856165|gb|ABE01374.1| recombination protein A [Mesorhizobium ciceri]
 gi|90856167|gb|ABE01375.1| recombination protein A [Mesorhizobium ciceri]
 gi|90856185|gb|ABE01384.1| recombination protein A [Mesorhizobium ciceri]
 gi|90856187|gb|ABE01385.1| recombination protein A [Mesorhizobium ciceri]
          Length = 143

 Score =  239 bits (609), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 113/144 (78%), Positives = 131/144 (90%), Gaps = 1/144 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++QK 
Sbjct: 1   LGANDQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQKK 59

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSV
Sbjct: 60  GGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSV 119

Query: 155 AALTPRAEIEGDMGESLPGMQARL 178
           AALTPRAEIEG+MG+SLPG+QARL
Sbjct: 120 AALTPRAEIEGEMGDSLPGLQARL 143


>gi|90856171|gb|ABE01377.1| recombination protein A [Mesorhizobium sp. 64b-Beja]
 gi|90856173|gb|ABE01378.1| recombination protein A [Mesorhizobium loti]
 gi|90856175|gb|ABE01379.1| recombination protein A [Mesorhizobium sp. 78-Elvas]
 gi|90856177|gb|ABE01380.1| recombination protein A [Mesorhizobium sp. 85-Elvas]
 gi|90856179|gb|ABE01381.1| recombination protein A [Mesorhizobium ciceri]
 gi|90856181|gb|ABE01382.1| recombination protein A [Mesorhizobium sp. CV-18-Elvas]
 gi|90856193|gb|ABE01388.1| recombination protein A [Mesorhizobium sp. 90-Evora]
 gi|90856197|gb|ABE01390.1| recombination protein A [Mesorhizobium sp. 94-Evora]
 gi|90856199|gb|ABE01391.1| recombination protein A [Mesorhizobium sp. 98-Evora]
 gi|90856201|gb|ABE01392.1| recombination protein A [Mesorhizobium sp. 102-Evora]
 gi|157931031|gb|ABW04741.1| recombination protein [Mesorhizobium sp. C-1-Coimbra]
 gi|157931033|gb|ABW04742.1| recombination protein [Mesorhizobium sp. C-27b-Coimbra]
 gi|157931035|gb|ABW04743.1| recombination protein [Mesorhizobium sp. V-15b-Viseu]
 gi|157931037|gb|ABW04744.1| recombination protein [Mesorhizobium sp. V-18-Viseu]
 gi|157931039|gb|ABW04745.1| recombination protein [Mesorhizobium sp. V-20-Viseu]
          Length = 143

 Score =  238 bits (608), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 113/144 (78%), Positives = 131/144 (90%), Gaps = 1/144 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++QK 
Sbjct: 1   LGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQKK 59

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSV
Sbjct: 60  GGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSV 119

Query: 155 AALTPRAEIEGDMGESLPGMQARL 178
           AALTPRAEIEG+MG+SLPG+QARL
Sbjct: 120 AALTPRAEIEGEMGDSLPGLQARL 143


>gi|222544085|gb|ACM66903.1| recombinase A [Mesorhizobium temperatum]
 gi|222544091|gb|ACM66906.1| recombinase A [Mesorhizobium tianshanense]
 gi|222544093|gb|ACM66907.1| recombinase A [Mesorhizobium amorphae]
          Length = 145

 Score =  238 bits (608), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 113/146 (77%), Positives = 132/146 (90%), Gaps = 1/146 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTT
Sbjct: 1   IERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVR
Sbjct: 60  LALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMG 168
           SGA+D++V+DSVAALTPRAEIEG+MG
Sbjct: 120 SGAIDVLVVDSVAALTPRAEIEGEMG 145


>gi|118185922|gb|ABK76574.1| RecA [Bacillus marisflavi]
          Length = 173

 Score =  238 bits (608), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 118/175 (67%), Positives = 145/175 (82%), Gaps = 2/175 (1%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           AL QI++ +GKG+IM+LG +      I  V SGSL LD ALG+GG+P+GRIVE+YGPESS
Sbjct: 1   ALKQIEKQFGKGSIMKLGEKTD--REIVTVPSGSLALDAALGVGGYPRGRIVEVYGPESS 58

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTT+ALH IA+ Q  GG  AF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI +
Sbjct: 59  GKTTVALHAIAEVQAQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAE 118

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
            LVRSGAVD IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I++S
Sbjct: 119 ALVRSGAVDAIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAINKS 173


>gi|213012316|gb|ACJ38724.1| recombination-repair protein [Vibrio rotiferianus]
          Length = 152

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 108/152 (71%), Positives = 134/152 (88%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+S
Sbjct: 121 CIFINQIRMKIGVMFGTPETTTGGNALKFYAS 152


>gi|222544089|gb|ACM66905.1| recombinase A [Sinorhizobium sp. CCNWGS114]
          Length = 145

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 115/146 (78%), Positives = 132/146 (90%), Gaps = 1/146 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG+IM+LGS+ S+ E IE + +GSLGLDIALGIGG PKGRI+EIYGPESSGKTT
Sbjct: 1   IERAFGKGSIMKLGSKDSVVE-IETIPTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPD GEQALEITD LVR
Sbjct: 60  LALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDNGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMG 168
           SGA+D++VIDSVAALTPRAEIEG+MG
Sbjct: 120 SGAIDVLVIDSVAALTPRAEIEGEMG 145


>gi|321309546|ref|YP_004191875.1| recombinase A [Mycoplasma haemofelis str. Langford 1]
 gi|319801390|emb|CBY92036.1| recombinase A [Mycoplasma haemofelis str. Langford 1]
          Length = 322

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 117/285 (41%), Positives = 187/285 (65%), Gaps = 1/285 (0%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IEV+S+GS  L+ ALG GG+PKG+I+EI+G +SSGK+TLALH++ ++QK G    ++D E
Sbjct: 32  IEVISTGSYVLNRALGAGGWPKGKIIEIFGTDSSGKSTLALHSVLEAQKAGQRVVYIDLE 91

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           + L+  +A+K+GVD   LL++ P++GE+A+E+   L+ +  VD+I++DSVAAL P AE E
Sbjct: 92  NTLNPEWAKKIGVDASKLLVAYPNSGEEAMELIFKLIETKNVDLIIVDSVAALVPSAEFE 151

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
            +  +   G+ ARLMS+ LR + S +  S   ++FINQ+R KIG  +    TTTGG ALK
Sbjct: 152 SNFQDQTMGLHARLMSKGLRIIQSKLIGSHTTIIFINQIREKIGNSYIPSITTTGGRALK 211

Query: 225 FYSSVRLDIRRVGSIKDKDSIT-GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           + +SVR++I+R  +IKD  + T G  T+  VVKNK  +P       + +  G   + E+I
Sbjct: 212 YAASVRVEIKRCEAIKDSSNTTIGFATKGIVVKNKYGAPMAVANMALYFDSGFDVYHEVI 271

Query: 284 DLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
              +   ++ + G+WF ++G+ + QG  + +  +REN E+ E ++
Sbjct: 272 QECLSKQVIVRKGSWFEYEGKNISQGLPHLRKLMRENKELFEGVK 316


>gi|172088019|dbj|BAG16816.1| recombinaseA [Weissella viridescens]
          Length = 164

 Score =  238 bits (606), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/164 (68%), Positives = 140/164 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SL LDIALGIGG+PKGRIVEIYGPESSGKTTLALH  A++QK GG  A++DAE+A+D  Y
Sbjct: 1   SLKLDIALGIGGYPKGRIVEIYGPESSGKTTLALHAAAEAQKNGGIVAYIDAENAIDVQY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           AR LGVD+  LL+SQPDTGEQ L I D L+ SGAVD++V+DSVAALTP+AEI+G++G+S 
Sbjct: 61  ARALGVDVDELLLSQPDTGEQGLAIADELISSGAVDLVVVDSVAALTPKAEIDGEIGDST 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            G+QAR+MSQALRK++ SI ++   ++FINQ+R KIGVMFG+PE
Sbjct: 121 VGLQARMMSQALRKMSGSILKTGTTVIFINQLREKIGVMFGNPE 164


>gi|90856191|gb|ABE01387.1| recombination protein A [Mesorhizobium mediterraneum]
          Length = 143

 Score =  238 bits (606), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 113/144 (78%), Positives = 131/144 (90%), Gaps = 1/144 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG+   + E IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK 
Sbjct: 1   LGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKK 59

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSV
Sbjct: 60  GGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSV 119

Query: 155 AALTPRAEIEGDMGESLPGMQARL 178
           AALTPRA+IEG+MG+SLPG+QARL
Sbjct: 120 AALTPRAKIEGEMGDSLPGLQARL 143


>gi|167554596|dbj|BAG06997.1| recombinaseA [Fructobacillus ficulneus]
          Length = 164

 Score =  238 bits (606), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 111/164 (67%), Positives = 138/164 (84%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG+PKGRIVE+YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  Y
Sbjct: 1   SVKLDVALGVGGYPKGRIVEVYGPESSGKTTIALHAVAEIQKNGGTAAYIDAENALDVKY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A  LGV    LL+SQPDTGEQ LEI D LV+SGAVD+IV+DSVAAL PR EIEG+MG++ 
Sbjct: 61  AEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDMIVVDSVAALVPRVEIEGEMGDAH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            G+QARLMSQALRKL  +++R+  I +FINQ+R K+GVMFG+PE
Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPE 164


>gi|33087843|gb|AAP93052.1| recombination protein A [Yersinia kristensenii]
          Length = 172

 Score =  238 bits (606), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 115/174 (66%), Positives = 142/174 (81%), Gaps = 2/174 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I
Sbjct: 59  AAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVI 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           ++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ+
Sbjct: 119 IVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQI 172


>gi|167554608|dbj|BAG07003.1| recombinaseA [Fructobacillus fructosus]
          Length = 164

 Score =  238 bits (606), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 111/164 (67%), Positives = 138/164 (84%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LDIALG+GG+PKGRIVE+YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  Y
Sbjct: 1   SVKLDIALGVGGYPKGRIVEVYGPESSGKTTIALHAVAEIQKAGGTAAYIDAENALDVKY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A  LGV    LL+SQPDTGEQ LEI D LV+SGAVD++V+DSVAAL PR EIEG+MG++ 
Sbjct: 61  AEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDMVVVDSVAALVPRVEIEGEMGDAH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            G+QARLMSQALRKL  +++R+  I +FINQ+R K+GVMFG+PE
Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPE 164


>gi|183585346|gb|ACC63987.1| recombinase [Clostridium perfringens]
          Length = 158

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 108/157 (68%), Positives = 136/157 (86%)

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT +I++S C+++FINQ+R
Sbjct: 1   AYDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGTINKSNCVVIFINQLR 60

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
            K+G+MFG+PETT GG ALKFY+SVR+DIRR+ SIK  D ITGN+TRVK+VKNK+A PFK
Sbjct: 61  EKVGIMFGNPETTPGGRALKFYASVRMDIRRIDSIKQGDGITGNRTRVKIVKNKVAPPFK 120

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
           Q EFDIMY EGIS  G ++D+GVK +IV KSGAW+S+
Sbjct: 121 QAEFDIMYNEGISKEGNIVDVGVKENIVQKSGAWYSY 157


>gi|33087801|gb|AAP93031.1| recombination protein A [Yersinia enterocolitica]
 gi|33087803|gb|AAP93032.1| recombination protein A [Yersinia enterocolitica]
 gi|33087807|gb|AAP93034.1| recombination protein A [Yersinia enterocolitica]
 gi|33087837|gb|AAP93049.1| recombination protein A [Yersinia kristensenii]
          Length = 171

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 115/173 (66%), Positives = 141/173 (81%), Gaps = 2/173 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I
Sbjct: 59  AAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVI 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           ++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ
Sbjct: 119 IVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQ 171


>gi|6143863|gb|AAF04410.1|AC010927_3 putative RecA protein [Arabidopsis thaliana]
          Length = 389

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 134/327 (40%), Positives = 213/327 (65%), Gaps = 5/327 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + +K  AL  ALSQ+   + K + + L  +      + V+S+GSL LD+ALG+GG PKGR
Sbjct: 59  VAEKDTALHLALSQLSGDFDKDSKLSL-QRFYRKRRVSVISTGSLNLDLALGVGGLPKGR 117

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VE+YG E+SGKTTLALH I ++QK GG CA++DAE+A+D   A  +GV+ + LLIS+P 
Sbjct: 118 MVEVYGKEASGKTTLALHIIKEAQKLGGYCAYLDAENAMDPSLAESIGVNTEELLISRPS 177

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           + E+ L I D+L +SG+VD+IV+DSVAAL P+ E++  +GE     Q+R+M+QALRK+  
Sbjct: 178 SAEKMLNIVDVLTKSGSVDVIVVDSVAALAPQCELDAPVGERYRDTQSRIMTQALRKIHY 237

Query: 189 SISRSKCILVFINQMRMKIGVMFGSP---ETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           S+  S+ ++VF+NQ+R  +      P   E T GGNAL F++++RL + R G IK  + +
Sbjct: 238 SVGYSQTLIVFLNQVRSHVKSNMHFPHAEEVTCGGNALPFHAAIRLKMIRTGLIKTANKV 297

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            G    V+VVKNK+A   K+ E  I +G G     E+++L  +  ++ + G  +  +G+ 
Sbjct: 298 YGLNVCVQVVKNKLAPGKKKSELGIHFGHGFYVEREVLELACEHGVILREGTSYFIEGEV 357

Query: 306 LGQGRENSKIFLRENIEIAENIESLLR 332
           + +G++ ++ +L EN E  + + ++LR
Sbjct: 358 I-EGKDAAEKYLVENKEALDTVVAILR 383


>gi|167554616|dbj|BAG07007.1| recombinaseA [Fructobacillus durionis]
          Length = 164

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 110/164 (67%), Positives = 138/164 (84%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG+PKGRIVE+YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  Y
Sbjct: 1   SVKLDVALGVGGYPKGRIVEVYGPESSGKTTIALHAVAEIQKAGGTAAYIDAENALDVKY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A  LGV    LL+SQPDTGEQ LEI D LV+SGAVD++V+DSVAAL PR EIEG+MG++ 
Sbjct: 61  AEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDMVVVDSVAALVPRVEIEGEMGDAH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            G+QARLMSQALRKL  +++R+  I +FINQ+R K+GVMFG+PE
Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPE 164


>gi|162955832|gb|ABY25291.1| recombinant DNA repair protein [Vibrio sp. MSSRF28]
 gi|167077377|gb|ABZ10910.1| recombinant DNA repair protein [Vibrio sp. MSSRF2]
          Length = 166

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 109/157 (69%), Positives = 135/157 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 10  VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAE 69

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGVD++ LL+SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIE
Sbjct: 70  HALDPVYAKKLGVDIEALLVSQPDTGEQALEICDALARSGAIDVMVIDSVAALTPKAEIE 129

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FIN
Sbjct: 130 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFIN 166


>gi|325651051|emb|CBY89347.1| RecA protein [Bradyrhizobium sp. R-46210=t414]
          Length = 150

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 113/151 (74%), Positives = 133/151 (88%), Gaps = 1/151 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG      + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+
Sbjct: 1   KGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTV 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD+
Sbjct: 60  AEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
           +VIDSVAAL P+AE+EG+MG++LPG+QARLM
Sbjct: 120 LVIDSVAALVPKAELEGEMGDALPGLQARLM 150


>gi|6694818|gb|AAF25403.1|AF214756_1 RecA protein [Arthrobacter sp. 'SMCC ZAT031']
          Length = 164

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 110/162 (67%), Positives = 138/162 (85%)

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTT+ALH +A +Q+ GG  AF+DAEHALD  YA++LGVD   LL+SQPDTGEQALEI DM
Sbjct: 1   KTTVALHAVASAQRNGGIAAFIDAEHALDPEYAKRLGVDTDALLVSQPDTGEQALEIMDM 60

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           LV SG++DI+VIDSVAAL PRAEIEG+MG+S  G+QARLM+QALRK+T  +S++K   +F
Sbjct: 61  LVGSGSIDIVVIDSVAALVPRAEIEGEMGDSHVGLQARLMTQALRKITGRLSQTKTTAIF 120

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           INQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+
Sbjct: 121 INQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKE 162


>gi|6694814|gb|AAF25399.1|AF214752_1 RecA protein [Micrococcus sp. SMCC ZAT352]
          Length = 162

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 109/157 (69%), Positives = 134/157 (85%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH +A  Q+ GG  AF+DAEHALD +YA+KLGVD+ NLL+SQPDTGEQALEI DMLV SG
Sbjct: 1   LHAVASVQRAGGIAAFIDAEHALDPVYAQKLGVDIDNLLVSQPDTGEQALEIMDMLVGSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           ++DI+V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T  +S S    +FINQ+R
Sbjct: 61  SIDIVVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGRLSNSNTTAIFINQLR 120

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
            KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD
Sbjct: 121 EKIGVMFGSPETTTGGKALKFYASVRVDVRRIETLKD 157


>gi|47095349|ref|ZP_00232959.1| recA protein [Listeria monocytogenes str. 1/2a F6854]
 gi|47016170|gb|EAL07093.1| recA protein [Listeria monocytogenes str. 1/2a F6854]
          Length = 211

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 107/186 (57%), Positives = 149/186 (80%)

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+R K+
Sbjct: 1   MLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKV 60

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PE T GG ALKFYS+VRL++RR   +K    + GN+T++KVVKNK+A PF+  E
Sbjct: 61  GVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKTKIKVVKNKVAPPFRIAE 120

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
            DIMYGEGIS  GEL+D+  +  +++KSG+W+S+K +R+GQGREN+K +L+E+ +I + I
Sbjct: 121 VDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGRENAKQYLKEHTDIRDEI 180

Query: 328 ESLLRQ 333
              +R+
Sbjct: 181 SKRVRE 186


>gi|40641498|emb|CAE51295.1| recombinase A [Actinobacillus lignieresii]
 gi|40641500|emb|CAE51296.1| recombinase A [Actinobacillus pleuropneumoniae]
          Length = 149

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 115/146 (78%), Positives = 129/146 (88%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GS+GLD ALGIGG P GRIVEIYGPESSGKTTL L  IAQ+QK+G TCAF+DAE
Sbjct: 1   IEAVSTGSIGLDAALGIGGLPMGRIVEIYGPESSGKTTLTLSVIAQAQKSGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVD   LLISQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIE
Sbjct: 61  HALDPVYARKLGVDTDALLISQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSI 190
           GDMG+S  G+QARLMSQALRKLT++I
Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTANI 146


>gi|307563556|gb|ADN52345.1| RecA [Rhizobium sp. CCNWSX0457]
 gi|307563558|gb|ADN52346.1| RecA [Rhizobium sp. CCNWSX0487]
 gi|307563560|gb|ADN52347.1| RecA [Rhizobium sp. CCNWSX0483]
 gi|307563562|gb|ADN52348.1| RecA [Rhizobium sp. CCNWSX0481]
          Length = 145

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 113/146 (77%), Positives = 131/146 (89%), Gaps = 1/146 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG+   I E +E VS+GSL LDIALGIGG PKGR++EIYGPESSGKTTLAL 
Sbjct: 1   FGKGSIMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRVIEIYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG CAFVDAEHALD +YARKLGVDL NLLISQPDTGEQALEI D LVRSGA+
Sbjct: 60  TIAEAQKKGGVCAFVDAEHALDPVYARKLGVDLHNLLISQPDTGEQALEIVDTLVRSGAI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLP 172
           D++V+DSVAALTP+AEIEG+MG+SLP
Sbjct: 120 DVLVVDSVAALTPKAEIEGEMGDSLP 145


>gi|77557430|gb|ABB00009.1| recombination protein A [Bradyrhizobium sp. CCBAU 7128301]
 gi|77557432|gb|ABB00010.1| recombination protein A [Bradyrhizobium sp. CCBAU 71283012]
          Length = 146

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 108/141 (76%), Positives = 128/141 (90%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +SSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALH +A++QK GG CAF+DAE
Sbjct: 6   IETISSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHCVAEAQKKGGICAFIDAE 65

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKL V++  LLISQPD GEQALEI D LVRSGA+D++++DSVAAL PRAE+E
Sbjct: 66  HALDPVYARKLAVNVDELLISQPDHGEQALEIADTLVRSGAIDVLIVDSVAALVPRAELE 125

Query: 165 GDMGESLPGMQARLMSQALRK 185
           G+MG++LPG+QARLMSQALRK
Sbjct: 126 GEMGDALPGLQARLMSQALRK 146


>gi|167554618|dbj|BAG07008.1| recombinaseA [Fructobacillus pseudoficulneus]
          Length = 164

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 109/164 (66%), Positives = 138/164 (84%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG+PKGRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  Y
Sbjct: 1   SVKLDVALGVGGYPKGRIIEVYGPESSGKTTIALHAVAEIQKNGGTAAYIDAENALDVKY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A  LGV    LL+SQPDTGEQ LEI D LV+SGAVD++V+DSVAAL PR EIEG+MG++ 
Sbjct: 61  AEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDMVVVDSVAALVPRVEIEGEMGDAH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            G+QARLMSQALRKL  +++R+  I +FINQ+R K+GVMFG+PE
Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPE 164


>gi|158631802|gb|ABW75006.1| RecA [Rhizobium sp. CCBAU 83457]
          Length = 136

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 112/135 (82%), Positives = 128/135 (94%)

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 2   ESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALE 61

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           ITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S  
Sbjct: 62  ITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNT 121

Query: 196 ILVFINQMRMKIGVM 210
           +++FINQ+RMKIGVM
Sbjct: 122 MVIFINQIRMKIGVM 136


>gi|40641516|emb|CAE51304.1| recombinase A [Actinobacillus actinomycetemcomitans]
 gi|78059263|gb|ABB18008.1| recombinase A [Aggregatibacter actinomycetemcomitans]
 gi|78059265|gb|ABB18009.1| recombinase A [Aggregatibacter actinomycetemcomitans]
          Length = 149

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 114/149 (76%), Positives = 130/149 (87%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GS GLD+ALGIGG P GRIVEI+GPESSGKTTL L  IA++QKTG TCAF+DAE
Sbjct: 1   IEAISTGSFGLDLALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAEAQKTGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGVD+K LL+SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIE
Sbjct: 61  HALDPIYASKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193
           GDMG+S  G+QARLMSQALRKLTS I  +
Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTSQIKNA 149


>gi|40641488|emb|CAE51290.1| recombinase A [Haemophilus parahaemolyticus]
 gi|40641492|emb|CAE51292.1| recombinase A [Haemophilus parahaemolyticus]
          Length = 149

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 113/149 (75%), Positives = 133/149 (89%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GS+GLD+ALGIGG P GRIVEI+GPESSGKTTL L T+AQ+QKTG TCAF+DAE
Sbjct: 1   IEAVSTGSIGLDMALGIGGLPMGRIVEIFGPESSGKTTLTLSTVAQAQKTGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGV+  +LLISQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIE
Sbjct: 61  HALDPVYAQKLGVNTDDLLISQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193
           GDMG+S  G+QARLMSQALRKLT++I  +
Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTANIKTT 149


>gi|37695734|gb|AAR00398.1| RecA [Vibrio parahaemolyticus]
          Length = 150

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 106/149 (71%), Positives = 133/149 (89%)

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           + G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+D
Sbjct: 1   REGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVD 60

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG
Sbjct: 61  SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFG 120

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           +PE TTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 121 NPEPTTGGNALKFYASVRLDIRRTGAIKE 149


>gi|212286526|dbj|BAG82908.1| RecA protein [Rhizobium sp. 4918]
          Length = 145

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 115/145 (79%), Positives = 130/145 (89%), Gaps = 1/145 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  ++ E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQ LEITD LV SGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQVLEITDTLVASGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQAR 177
           SVAALTPRAEIEG+MG+SLPG+Q R
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQVR 144


>gi|6694811|gb|AAF25396.1|AF214749_1 RecA protein [Micrococcus sp. SMCC ZAT351]
          Length = 164

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 110/163 (67%), Positives = 137/163 (84%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           +A  Q+ GG  AF+DAEHALD +YA+KLGVD+ NLL+SQPDTGEQALEI DMLV SG++D
Sbjct: 2   VASVQRAGGIAAFIDAEHALDPVYAQKLGVDIDNLLVSQPDTGEQALEIMDMLVGSGSID 61

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           I+V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T  +S S    +FINQ+R KI
Sbjct: 62  IVVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGRLSNSNTTAIFINQLREKI 121

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           GVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+T
Sbjct: 122 GVMFGSPETTTGGKALKFYASVRVDVRRIETLKDGANPVGNRT 164


>gi|309274216|gb|ADO63752.1| recombinase A [Pseudomonas umsongensis]
          Length = 149

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 108/149 (72%), Positives = 135/149 (90%)

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+   G+Q
Sbjct: 1   GVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQ 60

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           ARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR
Sbjct: 61  ARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRR 120

Query: 236 VGSIKDKDSITGNQTRVKVVKNKMASPFK 264
            G++K+ D + G++TRVKVVKNK+ASPF+
Sbjct: 121 TGAVKEGDEVVGSETRVKVVKNKVASPFR 149


>gi|262013566|gb|ACY06855.1| recombination protein A [Yersinia ruckeri]
          Length = 170

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 115/172 (66%), Positives = 140/172 (81%), Gaps = 2/172 (1%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KGAIM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGAIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  ASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FI
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFI 170


>gi|262013562|gb|ACY06853.1| recombination protein A [Yersinia sp. ABF6a-c]
 gi|262013564|gb|ACY06854.1| recombination protein A [Yersinia sp. APN3a-c]
          Length = 170

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 115/172 (66%), Positives = 140/172 (81%), Gaps = 2/172 (1%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KGAIM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGAIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FI
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFI 170


>gi|157326923|gb|ABV44574.1| RecA [Burkholderia cenocepacia]
          Length = 158

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 116/159 (72%), Positives = 138/159 (86%), Gaps = 1/159 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQ 158


>gi|329666354|gb|AEB96228.1| recombinase A [Rhizobium sp. CCNWSX0878]
 gi|329666356|gb|AEB96229.1| recombinase A [Rhizobium sp. CCNWSX0879]
 gi|329666358|gb|AEB96230.1| recombinase A [Rhizobium sp. CCNWSX0884]
 gi|329666360|gb|AEB96231.1| recombinase A [Rhizobium sp. CCNWSX0887]
          Length = 141

 Score =  236 bits (601), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 113/142 (79%), Positives = 131/142 (92%), Gaps = 1/142 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL 
Sbjct: 1   FGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAV
Sbjct: 60  TIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMG 168
           D++V+DSVAALTPRAEIEG+MG
Sbjct: 120 DVLVVDSVAALTPRAEIEGEMG 141


>gi|24251181|gb|AAN46108.1| RecA [Bacillus amyloliquefaciens]
          Length = 166

 Score =  236 bits (601), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 111/166 (66%), Positives = 139/166 (83%)

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVDI+VIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I++SK I +FIN
Sbjct: 1   RSGAVDIVVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKSKTIAIFIN 60

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K  + + GN+T++KVVKNK+A 
Sbjct: 61  QIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKTKIKVVKNKVAP 120

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           PF+  E DIMYGEGIS  GE+IDLG +  IV KSGAW+S++ +RLG
Sbjct: 121 PFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGAWYSYQEERLG 166


>gi|33087839|gb|AAP93050.1| recombination protein A [Yersinia kristensenii]
          Length = 170

 Score =  236 bits (601), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 114/172 (66%), Positives = 140/172 (81%), Gaps = 2/172 (1%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAS 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I+
Sbjct: 59  AQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVII 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           +DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ
Sbjct: 119 VDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQ 170


>gi|160375127|gb|ABX38945.1| recombinase protein A [Mesorhizobium huakuii]
          Length = 144

 Score =  235 bits (600), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 111/145 (76%), Positives = 131/145 (90%), Gaps = 1/145 (0%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLA
Sbjct: 1   RAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLA 59

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSG
Sbjct: 60  LHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSG 119

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGE 169
           A+D++V+DSVAALTPRAEIEG+MG+
Sbjct: 120 AIDVLVVDSVAALTPRAEIEGEMGD 144


>gi|117573446|gb|ABK40899.1| recombinase [Pseudomonas sp. C10-181]
 gi|117573448|gb|ABK40900.1| recombinase [Pseudomonas sp. C10-186]
 gi|117573450|gb|ABK40901.1| recombinase [Pseudomonas sp. C10-189]
 gi|117573452|gb|ABK40902.1| recombinase [Pseudomonas sp. C10-190]
 gi|117573454|gb|ABK40903.1| recombinase [Pseudomonas sp. P97.39]
 gi|117573456|gb|ABK40904.1| recombinase [Pseudomonas sp. C10-197]
 gi|117573458|gb|ABK40905.1| recombinase [Pseudomonas sp. C10-204]
 gi|117573460|gb|ABK40906.1| recombinase [Pseudomonas sp. C10-205]
 gi|117573466|gb|ABK40909.1| recombinase [Pseudomonas sp. S7-42]
 gi|117573468|gb|ABK40910.1| recombinase [Pseudomonas sp. C6-11]
 gi|117573470|gb|ABK40911.1| recombinase [Pseudomonas sp. F96.26]
 gi|117573472|gb|ABK40912.1| recombinase [Pseudomonas sp. K93.52]
 gi|117573476|gb|ABK40914.1| recombinase [Pseudomonas sp. P97.1]
 gi|117573478|gb|ABK40915.1| recombinase [Pseudomonas sp. P97.27]
 gi|117573480|gb|ABK40916.1| recombinase [Pseudomonas sp. Q86-87]
 gi|117573484|gb|ABK40918.1| recombinase [Pseudomonas sp. S8-110]
 gi|117573486|gb|ABK40919.1| recombinase [Pseudomonas sp. S8-130]
 gi|117573488|gb|ABK40920.1| recombinase [Pseudomonas sp. S8-151]
 gi|117573496|gb|ABK40924.1| recombinase [Pseudomonas sp. S7-52]
          Length = 160

 Score =  235 bits (600), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 117/161 (72%), Positives = 137/161 (85%), Gaps = 2/161 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           GA+M++G Q    + I  +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L  IA
Sbjct: 1   GAVMRMGDQDR--QAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           Q+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I
Sbjct: 59  QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVI 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           ++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 119 IVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 159


>gi|195542192|gb|ACF98306.1| RecA [Rhizobium sp. CCBAU 45187]
          Length = 161

 Score =  235 bits (600), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 113/152 (74%), Positives = 134/152 (88%)

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
           + L + G  +    ++  PESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLG
Sbjct: 10  LVLALCGRRRVPCTKLCRPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLG 69

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           VDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QA
Sbjct: 70  VDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQA 129

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           RLMSQALRKLT+SIS+S  +++FINQ+RMKIG
Sbjct: 130 RLMSQALRKLTASISKSNTMVIFINQIRMKIG 161


>gi|5923998|emb|CAB56531.1| RecA protein [Frankia sp. HR401]
          Length = 164

 Score =  235 bits (600), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 111/163 (68%), Positives = 134/163 (82%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           +A +Q  GG  AF+DAEHALD  YA KLGVD   LL+SQPDTGEQALEI DML+RSGA+D
Sbjct: 2   VANAQAAGGIAAFIDAEHALDPEYAGKLGVDTDALLVSQPDTGEQALEIADMLIRSGALD 61

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R K+
Sbjct: 62  VIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGALANSGTTAIFINQLREKV 121

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           GVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+T
Sbjct: 122 GVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTEAVGNRT 164


>gi|264668508|gb|ACY71633.1| recombinase protein A [Rhizobium giardinii]
          Length = 132

 Score =  235 bits (600), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 113/131 (86%), Positives = 124/131 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL
Sbjct: 2   VSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIEG+M
Sbjct: 62  DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEM 121

Query: 168 GESLPGMQARL 178
           G+SLPG+QARL
Sbjct: 122 GDSLPGLQARL 132


>gi|40641496|emb|CAE51294.1| recombinase A [Haemophilus paraphrohaemolyticus]
          Length = 149

 Score =  235 bits (599), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 113/149 (75%), Positives = 132/149 (88%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GS+GLD+ALGIGG P GRIVEI+GPESSGKTTL L TIAQ+QK G TCAF+DAE
Sbjct: 1   IEAVSTGSIGLDMALGIGGLPMGRIVEIFGPESSGKTTLTLSTIAQAQKAGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGV+  +LLISQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIE
Sbjct: 61  HALDPVYAQKLGVNTDDLLISQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193
           GDMG+S  G+QARLMSQALRKLT++I  +
Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTANIKTT 149


>gi|40641494|emb|CAE51293.1| recombinase A [Haemophilus paraphrohaemolyticus]
          Length = 149

 Score =  235 bits (599), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 113/146 (77%), Positives = 131/146 (89%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GS+GLD+ALGIGG P GRIVEI+GPESSGKTTL L TIAQ+QK G TCAF+DAE
Sbjct: 1   IEAVSTGSIGLDMALGIGGLPMGRIVEIFGPESSGKTTLTLSTIAQAQKAGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGV+  +LLISQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIE
Sbjct: 61  HALDPVYAQKLGVNTDDLLISQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSI 190
           GDMG+S  G+QARLMSQALRKLT++I
Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTANI 146


>gi|33087815|gb|AAP93038.1| recombination protein A [Yersinia frederiksenii]
          Length = 169

 Score =  235 bits (599), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 114/169 (67%), Positives = 140/169 (82%), Gaps = 2/169 (1%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 58

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L 
Sbjct: 59  TLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALT 118

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 119 RSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 167


>gi|222544083|gb|ACM66902.1| recombinase A [Sinorhizobium meliloti]
          Length = 145

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 115/142 (80%), Positives = 130/142 (91%), Gaps = 1/142 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL 
Sbjct: 5   FGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 63

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+
Sbjct: 64  TIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAI 123

Query: 147 DIIVIDSVAALTPRAEIEGDMG 168
           DI+VIDSVAAL PRAEIEG+MG
Sbjct: 124 DILVIDSVAALVPRAEIEGEMG 145


>gi|262013572|gb|ACY06858.1| recombination protein A [Yersinia similis]
 gi|262013574|gb|ACY06859.1| recombination protein A [Yersinia intermedia]
 gi|262013576|gb|ACY06860.1| recombination protein A [Yersinia aldovae]
 gi|262292895|gb|ACY42650.1| recombination protein A [Yersinia sp. A125KOH2]
 gi|262292897|gb|ACY42651.1| recombination protein A [Yersinia sp. AYV25K1]
 gi|262292899|gb|ACY42652.1| recombination protein A [Yersinia sp. AYV7.1KOH2]
          Length = 170

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 114/172 (66%), Positives = 140/172 (81%), Gaps = 2/172 (1%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  ASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FI
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFI 170


>gi|264668502|gb|ACY71630.1| recombinase protein A [Sinorhizobium fredii]
          Length = 132

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 113/131 (86%), Positives = 123/131 (93%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL
Sbjct: 2   VSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M
Sbjct: 62  DPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 121

Query: 168 GESLPGMQARL 178
           G+SLPGMQARL
Sbjct: 122 GDSLPGMQARL 132


>gi|264668510|gb|ACY71634.1| recombinase protein A [Phyllobacterium trifolii]
          Length = 132

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 111/131 (84%), Positives = 124/131 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALG+GG P GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL
Sbjct: 2   VSTGSLGLDIALGVGGLPNGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+M
Sbjct: 62  DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEM 121

Query: 168 GESLPGMQARL 178
           G+SLPG+QARL
Sbjct: 122 GDSLPGLQARL 132


>gi|117573462|gb|ABK40907.1| recombinase [Pseudomonas sp. C6-23]
 gi|117573464|gb|ABK40908.1| recombinase [Pseudomonas sp. C6-2]
          Length = 160

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 116/161 (72%), Positives = 136/161 (84%), Gaps = 2/161 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           GA+M++G      + I  +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L  IA
Sbjct: 1   GAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           Q+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I
Sbjct: 59  QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVI 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           ++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 119 IVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 159


>gi|262013568|gb|ACY06856.1| recombination protein A [Yersinia rohdei]
 gi|262013570|gb|ACY06857.1| recombination protein A [Yersinia pseudotuberculosis]
 gi|262013578|gb|ACY06861.1| recombination protein A [Yersinia enterocolitica subsp.
           enterocolitica]
 gi|262013580|gb|ACY06862.1| recombination protein A [Yersinia enterocolitica subsp.
           palearctica]
 gi|262013582|gb|ACY06863.1| recombination protein A [Yersinia massiliensis]
 gi|262013584|gb|ACY06864.1| recombination protein A [Yersinia aleksiciae]
          Length = 170

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 114/172 (66%), Positives = 140/172 (81%), Gaps = 2/172 (1%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FI
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFI 170


>gi|7105877|emb|CAB75958.1| RecA protein [Frankia sp. ORS020606]
          Length = 169

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 113/161 (70%), Positives = 135/161 (83%)

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           ++ +TGG  AF+DAEHALD  YA KLGVD   LL+SQPDTGEQALEI DMLVRSGA+DII
Sbjct: 9   RAGRTGGIAAFIDAEHALDPEYAGKLGVDTDGLLVSQPDTGEQALEIADMLVRSGALDII 68

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T++++ S    +FINQ+R KIGV
Sbjct: 69  VIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTAALANSGTTAIFINQLREKIGV 128

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           MFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+T
Sbjct: 129 MFGSPETTTGGKALKFYASVRLDVRRIETLKDGTEAVGNRT 169


>gi|212286531|dbj|BAG82910.1| RecA protein [Rhizobium sp. 26718]
          Length = 145

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 116/146 (79%), Positives = 129/146 (88%), Gaps = 1/146 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M LGS  ++ E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MTLGSYENVVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LV SGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVSSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARL 178
           SVAALTPRAEIE +MG+SLPG Q RL
Sbjct: 120 SVAALTPRAEIEVEMGDSLPGCQVRL 145


>gi|264668504|gb|ACY71631.1| recombinase protein A [Sinorhizobium meliloti]
          Length = 132

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 113/131 (86%), Positives = 123/131 (93%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL
Sbjct: 2   VSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+M
Sbjct: 62  DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEM 121

Query: 168 GESLPGMQARL 178
           G+SLPGMQARL
Sbjct: 122 GDSLPGMQARL 132


>gi|172088021|dbj|BAG16817.1| recombinaseA [Weissella paramesenteroides]
          Length = 164

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 107/164 (65%), Positives = 140/164 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SL LD+ALGIGG+PKGR++EIYGPESSGKTTLALH +A++QK GG  A++DAE+A+D  Y
Sbjct: 1   SLKLDVALGIGGYPKGRVIEIYGPESSGKTTLALHAVAEAQKNGGIVAYIDAENAMDVEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD+  LL+SQPDTGEQ L I D L+ SGA+D++VIDSVAALTP+AEI+G++G+S 
Sbjct: 61  AKALGVDVDELLLSQPDTGEQGLAIADALIASGAIDMVVIDSVAALTPKAEIDGEIGDSS 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            G+QAR+MSQALRK++ +I ++    +FINQ+R KIGVMFG+PE
Sbjct: 121 VGLQARMMSQALRKMSGAILKTGTTAIFINQLREKIGVMFGNPE 164


>gi|264668496|gb|ACY71627.1| recombinase protein A [Mesorhizobium amorphae]
 gi|264668498|gb|ACY71628.1| recombinase protein A [Mesorhizobium tianshanense]
          Length = 132

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 109/131 (83%), Positives = 124/131 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHAL
Sbjct: 2   VPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+M
Sbjct: 62  DPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 121

Query: 168 GESLPGMQARL 178
           G+SLPG+QARL
Sbjct: 122 GDSLPGLQARL 132


>gi|264668486|gb|ACY71622.1| recombinase protein A [Mesorhizobium alhagi]
 gi|264668488|gb|ACY71623.1| recombinase protein A [Mesorhizobium alhagi]
 gi|264668490|gb|ACY71624.1| recombinase protein A [Mesorhizobium alhagi]
 gi|264668492|gb|ACY71625.1| recombinase protein A [Mesorhizobium alhagi]
 gi|264668494|gb|ACY71626.1| recombinase protein A [Mesorhizobium alhagi]
          Length = 132

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 109/131 (83%), Positives = 124/131 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHAL
Sbjct: 2   VPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGAVD++V+DSVAALTPRAEIEG+M
Sbjct: 62  DPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALTPRAEIEGEM 121

Query: 168 GESLPGMQARL 178
           G+SLPG+QARL
Sbjct: 122 GDSLPGLQARL 132


>gi|33087879|gb|AAP93070.1| recombination protein A [Yersinia ruckeri]
          Length = 166

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 116/167 (69%), Positives = 138/167 (82%), Gaps = 2/167 (1%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL AAL QI++ +GKGAIM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIY
Sbjct: 2   KALAAALGQIEKQFGKGAIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQA
Sbjct: 60  GPESSGKTTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           LEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MS
Sbjct: 120 LEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMS 166


>gi|40641504|emb|CAE51298.1| recombinase A [Haemophilus aphrophilus]
 gi|40641506|emb|CAE51299.1| recombinase A [Haemophilus paraphrophilus]
 gi|40641508|emb|CAE51300.1| recombinase A [Haemophilus paraphrophilus]
 gi|78059269|gb|ABB18011.1| recombinase A [Aggregatibacter aphrophilus]
 gi|78059273|gb|ABB18013.1| recombinase A [Aggregatibacter aphrophilus]
 gi|78059275|gb|ABB18014.1| recombinase A [Aggregatibacter aphrophilus]
 gi|78059277|gb|ABB18015.1| recombinase A [Aggregatibacter aphrophilus]
 gi|78059279|gb|ABB18016.1| recombinase A [Aggregatibacter aphrophilus]
          Length = 149

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/149 (75%), Positives = 129/149 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GS GLD+ALGIGG P GRIVEI+GPESSGKTTL L  IA++QK G TCAF+DAE
Sbjct: 1   IEAISTGSFGLDLALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAEAQKNGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGVD+K LL+SQPD GEQALEI D LVRSGAVD++++DSVAALTP+AEIE
Sbjct: 61  HALDPIYASKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVVIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193
           GDMG+S  G+QARLMSQALRKLTS I  +
Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTSQIKNA 149


>gi|264668500|gb|ACY71629.1| recombinase protein A [Mesorhizobium tianshanense]
          Length = 132

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 108/131 (82%), Positives = 124/131 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHAL
Sbjct: 2   VPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+M
Sbjct: 62  DPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 121

Query: 168 GESLPGMQARL 178
           G+SLPG+QARL
Sbjct: 122 GDSLPGLQARL 132


>gi|167554604|dbj|BAG07001.1| recombinaseA [Leuconostoc mesenteroides]
          Length = 164

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 109/164 (66%), Positives = 138/164 (84%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ +D+ALG+GG+PKGRI+E+YGPESSGKTT+AL  +A+ QK GGT A++DAE+ALD  Y
Sbjct: 1   SVKIDVALGVGGYPKGRIIEVYGPESSGKTTIALXAVAEVQKQGGTAAYIDAENALDVKY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A  LGV    LL+SQPDTGEQ LEI D LV+SGAVD+IV+DSVAAL PRAEIEG+MG++ 
Sbjct: 61  AEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDMIVVDSVAALVPRAEIEGEMGDAH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            G+QARLMSQALRKL  +++R+  I +FINQ+R K+GVMFG+PE
Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPE 164


>gi|33087855|gb|AAP93058.1| recombination protein A [Yersinia mollaretii]
          Length = 161

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 109/158 (68%), Positives = 132/158 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 4   VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRAGKTCAFIDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIE
Sbjct: 64  HALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           G++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ
Sbjct: 124 GEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQ 161


>gi|117573474|gb|ABK40913.1| recombinase [Pseudomonas sp. K94.38]
          Length = 156

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 116/158 (73%), Positives = 135/158 (85%), Gaps = 2/158 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           GA+M++G Q    + I  +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L  IA
Sbjct: 1   GAVMRMGDQDR--QAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           Q+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I
Sbjct: 59  QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVI 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           ++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T
Sbjct: 119 IVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKIT 156


>gi|78059287|gb|ABB18020.1| recombinase A [Pasteurella pneumotropica]
          Length = 149

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 113/146 (77%), Positives = 128/146 (87%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GS+GLDIALGIGG P GRIVEI+GPESSGKTTL L  IAQ+QK G TCAF+DAE
Sbjct: 1   VESISTGSIGLDIALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGVD+K LL+SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIE
Sbjct: 61  HALDPIYAAKLGVDVKELLVSQPDHGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSI 190
           GDMG+S  G+QARLMSQALRKLT  I
Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTGQI 146


>gi|40641476|emb|CAE51284.1| recombinase A [Haemophilus parainfluenzae]
 gi|40641478|emb|CAE51285.1| recombinase A [Haemophilus parainfluenzae]
 gi|40641480|emb|CAE51286.1| recombinase A [Haemophilus parainfluenzae]
 gi|40641482|emb|CAE51287.1| recombinase A [Haemophilus parainfluenzae]
 gi|161346565|gb|ABX65089.1| recombinase A [Haemophilus parainfluenzae]
 gi|161346567|gb|ABX65090.1| recombinase A [Haemophilus parainfluenzae]
 gi|161346569|gb|ABX65091.1| recombinase A [Haemophilus parainfluenzae]
          Length = 149

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/149 (75%), Positives = 129/149 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VS+GSLGLD+ALGIGG P GRIVEI+GPESSGKTTL L  IAQ+QK G TCAF+DAE
Sbjct: 1   VESVSTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKVGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGVD+K LL+SQPD GEQALEI D LVRSGAVD++++DSVAALTP+AEIE
Sbjct: 61  HALDPIYAAKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVVIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193
           G+MG+S  G+QARLMSQALRKLT  I  +
Sbjct: 121 GEMGDSHMGLQARLMSQALRKLTGQIKNA 149


>gi|264668506|gb|ACY71632.1| recombinase protein A [Rhizobium indigoferae]
          Length = 132

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 109/131 (83%), Positives = 125/131 (95%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSLGLDIALG+GG P+GRI++IYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL
Sbjct: 2   ISTGSLGLDIALGVGGLPRGRIIQIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+M
Sbjct: 62  DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEM 121

Query: 168 GESLPGMQARL 178
           G+SLPG+QARL
Sbjct: 122 GDSLPGLQARL 132


>gi|224174436|emb|CAR92636.1| recombinase A [Bradyrhizobium sp. LMG 10300]
 gi|224174438|emb|CAR92637.1| recombinase A [Bradyrhizobium sp. LMG 11807]
          Length = 147

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 111/148 (75%), Positives = 131/148 (88%), Gaps = 1/148 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LG      + +E VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A+
Sbjct: 1   SVMKLGKNDRSMD-VETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V
Sbjct: 60  AQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARL 178
           +DSVAAL P+AE+EG+MGESLPG+QARL
Sbjct: 120 VDSVAALVPKAELEGEMGESLPGLQARL 147


>gi|33087867|gb|AAP93064.1| recombination protein A [Yersinia mollaretii]
          Length = 159

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 109/158 (68%), Positives = 132/158 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 2   VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRAGKTCAFIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIE
Sbjct: 62  HALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           G++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ
Sbjct: 122 GEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQ 159


>gi|40641484|emb|CAE51288.1| recombinase A [Haemophilus pittmaniae]
 gi|40641486|emb|CAE51289.1| recombinase A [Haemophilus pittmaniae]
 gi|40641490|emb|CAE51291.1| recombinase A [Haemophilus pittmaniae]
          Length = 149

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 113/149 (75%), Positives = 129/149 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VS+GSLGLD+ALGIGG P GRIVEI+GPESSGKTTL L  IAQ+QK G TCAF+DAE
Sbjct: 1   VESVSTGSLGLDMALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGVD+K LL+SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIE
Sbjct: 61  HALDPIYAAKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193
           G+MG+S  G+QARLMSQALRKLT  I  +
Sbjct: 121 GEMGDSHMGLQARLMSQALRKLTGQIKNA 149


>gi|172088023|dbj|BAG16818.1| recombinaseA [Weissella confusa]
          Length = 164

 Score =  233 bits (594), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 105/164 (64%), Positives = 140/164 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SL LD+ALGIGG+PKGRI+EIYGPESSGKTTLALH +A++Q+ GG  A++DAE+A+D  Y
Sbjct: 1   SLKLDVALGIGGYPKGRIIEIYGPESSGKTTLALHAVAEAQRNGGIVAYIDAENAMDVEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD+  LL+SQPDTGEQ L I D L+ SGA+D++V+DSVAALTP+AEI+G++G+S 
Sbjct: 61  AKALGVDVDELLLSQPDTGEQGLAIADALITSGAIDMVVVDSVAALTPKAEIDGEIGDST 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            G+QAR+MSQALRK++ +I ++    +FINQ+R KIG+MFG+PE
Sbjct: 121 VGLQARMMSQALRKMSGAILKTGTTAIFINQLREKIGIMFGNPE 164


>gi|33087881|gb|AAP93071.1| recombination protein A [Yersinia ruckeri]
          Length = 165

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 109/158 (68%), Positives = 132/158 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 8   VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIASAQREGKTCAFIDAE 67

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIE
Sbjct: 68  HALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIE 127

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           G++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ
Sbjct: 128 GEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQ 165


>gi|33087783|gb|AAP93022.1| recombination protein A [Yersinia aldovae]
 gi|33087823|gb|AAP93042.1| recombination protein A [Yersinia intermedia]
          Length = 159

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 109/158 (68%), Positives = 132/158 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 2   VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIASAQREGKTCAFIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIE
Sbjct: 62  HALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           G++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ
Sbjct: 122 GEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQ 159


>gi|161346551|gb|ABX65082.1| recombinase A [Haemophilus haemolyticus]
          Length = 149

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 112/149 (75%), Positives = 128/149 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSLGLDIALGIGG P GRIVEI+GPESSGKTTL L  IAQ+QK G TCAF+DAE
Sbjct: 1   VESISTGSLGLDIALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGVD+K L +SQPD GEQALEI D LVRSGA+D+I++DSVAALTP+AEIE
Sbjct: 61  HALDPIYAAKLGVDVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193
           GDMG+S  G+QARLMSQALRKLT  I  +
Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTGQIKNA 149


>gi|161346499|gb|ABX65056.1| recombinase A [Haemophilus haemolyticus]
 gi|161346513|gb|ABX65063.1| recombinase A [Haemophilus haemolyticus]
 gi|161346523|gb|ABX65068.1| recombinase A [Haemophilus haemolyticus]
          Length = 149

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 112/149 (75%), Positives = 128/149 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSLGLD+ALGIGG P GRIVEI+GPESSGKTTL L  IAQ+QK G TCAF+DAE
Sbjct: 1   VESISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGVD+K L ISQPD GEQALEI D LVRSGA+D+I++DSVAALTP+AEIE
Sbjct: 61  HALDPIYAAKLGVDVKELFISQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193
           GDMG+S  G+QARLMSQALRKLT  I  +
Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTGQIKNA 149


>gi|199601688|dbj|BAG70953.1| RecA protein [Agrobacterium tumefaciens]
          Length = 136

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 110/131 (83%), Positives = 123/131 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 6   VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGVCAFVDAE 65

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTP+AEIE
Sbjct: 66  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPKAEIE 125

Query: 165 GDMGESLPGMQ 175
           G+MG+SLPGMQ
Sbjct: 126 GEMGDSLPGMQ 136


>gi|161346379|gb|ABX64996.1| recombinase A [Haemophilus influenzae]
          Length = 149

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 111/149 (74%), Positives = 129/149 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSLGLD+ALGIGG P GRIVEI+GPESSGKTTL L  IAQ+QK+G TCAF+DAE
Sbjct: 1   VESISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKSGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGVD+K L +SQPD GEQALEI D LVRSGA+D+I++DSVAALTP+AEIE
Sbjct: 61  HALDPIYAAKLGVDVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193
           GDMG+S  G+QARLMSQALRKLT  I  +
Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTGQIKNA 149


>gi|264668512|gb|ACY71635.1| recombinase protein A [Agrobacterium tumefaciens]
          Length = 132

 Score =  233 bits (593), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 111/131 (84%), Positives = 124/131 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL
Sbjct: 2   VSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL++LLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+M
Sbjct: 62  DPVYARKLGVDLQSLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEM 121

Query: 168 GESLPGMQARL 178
           G+SLPG+QARL
Sbjct: 122 GDSLPGLQARL 132


>gi|224174416|emb|CAR92626.1| recombinase A [Bradyrhizobium liaoningense]
 gi|224174418|emb|CAR92627.1| recombinase A [Bradyrhizobium liaoningense]
          Length = 147

 Score =  233 bits (593), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 112/148 (75%), Positives = 131/148 (88%), Gaps = 1/148 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A+
Sbjct: 1   SVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V
Sbjct: 60  AQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARL 178
           IDSVAAL P+AE+EG+MG++LPG+QARL
Sbjct: 120 IDSVAALVPKAELEGEMGDALPGLQARL 147


>gi|33087859|gb|AAP93060.1| recombination protein A [Yersinia mollaretii]
          Length = 158

 Score =  233 bits (593), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 109/158 (68%), Positives = 132/158 (83%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEH
Sbjct: 1   ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRAGKTCAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG
Sbjct: 61  ALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           ++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ+
Sbjct: 121 EIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQI 158


>gi|161346345|gb|ABX64979.1| recombinase A [Haemophilus influenzae]
 gi|161346445|gb|ABX65029.1| recombinase A [Haemophilus influenzae]
          Length = 149

 Score =  233 bits (593), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 111/149 (74%), Positives = 128/149 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSLGLD+ALGIGG P GRIVEI+GPESSGKTTL L  IAQ+QK G TCAF+DAE
Sbjct: 1   VESISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGVD+K L +SQPD GEQALEI D LVRSGA+D+I++DSVAALTP+AEIE
Sbjct: 61  HALDPIYATKLGVDVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193
           GDMG+S  G+QARLMSQALRKLT  I  +
Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTGQIKNA 149


>gi|40641502|emb|CAE51297.1| recombinase A [Haemophilus aphrophilus]
 gi|40641510|emb|CAE51301.1| recombinase A [Haemophilus segnis]
 gi|40641512|emb|CAE51302.1| recombinase A [Haemophilus segnis]
 gi|40641514|emb|CAE51303.1| recombinase A [Haemophilus segnis]
 gi|78059281|gb|ABB18017.1| recombinase A [Aggregatibacter segnis]
 gi|78059283|gb|ABB18018.1| recombinase A [Aggregatibacter segnis]
 gi|78059285|gb|ABB18019.1| recombinase A [Aggregatibacter segnis]
          Length = 149

 Score =  233 bits (593), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 112/149 (75%), Positives = 128/149 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GS GLD+ALGIGG P GRIVEI+GPESSGKTTL L  IA++QK G TCAF+DAE
Sbjct: 1   IEAISTGSFGLDLALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAEAQKAGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGVD+K LL+SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIE
Sbjct: 61  HALDPIYASKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193
           GDMG+S  G+QARLMSQALRKLT  I  +
Sbjct: 121 GDMGDSHVGLQARLMSQALRKLTGQIKNA 149


>gi|40641468|emb|CAE51280.1| recombinase A [Haemophilus influenzae]
 gi|40641470|emb|CAE51281.1| recombinase A [Haemophilus aegyptius]
 gi|40641472|emb|CAE51282.1| recombinase A [Haemophilus haemolyticus]
 gi|40641474|emb|CAE51283.1| recombinase A [Haemophilus haemolyticus]
 gi|161346171|gb|ABX64892.1| recombinase A [Haemophilus influenzae]
 gi|161346173|gb|ABX64893.1| recombinase A [Haemophilus influenzae]
 gi|161346175|gb|ABX64894.1| recombinase A [Haemophilus influenzae 22.1-21]
 gi|161346177|gb|ABX64895.1| recombinase A [Haemophilus influenzae 22.1-24]
 gi|161346179|gb|ABX64896.1| recombinase A [Haemophilus haemolyticus]
 gi|161346181|gb|ABX64897.1| recombinase A [Haemophilus haemolyticus]
 gi|161346183|gb|ABX64898.1| recombinase A [Haemophilus influenzae]
 gi|161346185|gb|ABX64899.1| recombinase A [Haemophilus haemolyticus]
 gi|161346187|gb|ABX64900.1| recombinase A [Haemophilus influenzae]
 gi|161346189|gb|ABX64901.1| recombinase A [Haemophilus influenzae]
 gi|161346191|gb|ABX64902.1| recombinase A [Haemophilus influenzae]
 gi|161346193|gb|ABX64903.1| recombinase A [Haemophilus haemolyticus]
 gi|161346195|gb|ABX64904.1| recombinase A [Haemophilus haemolyticus]
 gi|161346197|gb|ABX64905.1| recombinase A [Haemophilus haemolyticus]
 gi|161346199|gb|ABX64906.1| recombinase A [Haemophilus haemolyticus]
 gi|161346201|gb|ABX64907.1| recombinase A [Haemophilus haemolyticus]
 gi|161346203|gb|ABX64908.1| recombinase A [Haemophilus influenzae]
 gi|161346205|gb|ABX64909.1| recombinase A [Haemophilus influenzae]
 gi|161346207|gb|ABX64910.1| recombinase A [Haemophilus influenzae]
 gi|161346209|gb|ABX64911.1| recombinase A [Haemophilus haemolyticus]
 gi|161346211|gb|ABX64912.1| recombinase A [Haemophilus haemolyticus]
 gi|161346213|gb|ABX64913.1| recombinase A [Haemophilus haemolyticus]
 gi|161346215|gb|ABX64914.1| recombinase A [Haemophilus influenzae]
 gi|161346217|gb|ABX64915.1| recombinase A [Haemophilus haemolyticus]
 gi|161346219|gb|ABX64916.1| recombinase A [Haemophilus influenzae]
 gi|161346221|gb|ABX64917.1| recombinase A [Haemophilus haemolyticus]
 gi|161346223|gb|ABX64918.1| recombinase A [Haemophilus influenzae]
 gi|161346225|gb|ABX64919.1| recombinase A [Haemophilus influenzae]
 gi|161346227|gb|ABX64920.1| recombinase A [Haemophilus haemolyticus]
 gi|161346229|gb|ABX64921.1| recombinase A [Haemophilus influenzae]
 gi|161346231|gb|ABX64922.1| recombinase A [Haemophilus influenzae]
 gi|161346233|gb|ABX64923.1| recombinase A [Haemophilus influenzae]
 gi|161346235|gb|ABX64924.1| recombinase A [Haemophilus influenzae]
 gi|161346237|gb|ABX64925.1| recombinase A [Haemophilus influenzae]
 gi|161346239|gb|ABX64926.1| recombinase A [Haemophilus influenzae]
 gi|161346241|gb|ABX64927.1| recombinase A [Haemophilus influenzae]
 gi|161346243|gb|ABX64928.1| recombinase A [Haemophilus haemolyticus]
 gi|161346245|gb|ABX64929.1| recombinase A [Haemophilus influenzae]
 gi|161346247|gb|ABX64930.1| recombinase A [Haemophilus influenzae]
 gi|161346249|gb|ABX64931.1| recombinase A [Haemophilus influenzae]
 gi|161346251|gb|ABX64932.1| recombinase A [Haemophilus haemolyticus]
 gi|161346253|gb|ABX64933.1| recombinase A [Haemophilus influenzae]
 gi|161346255|gb|ABX64934.1| recombinase A [Haemophilus haemolyticus]
 gi|161346257|gb|ABX64935.1| recombinase A [Haemophilus haemolyticus]
 gi|161346259|gb|ABX64936.1| recombinase A [Haemophilus haemolyticus]
 gi|161346261|gb|ABX64937.1| recombinase A [Haemophilus haemolyticus]
 gi|161346263|gb|ABX64938.1| recombinase A [Haemophilus haemolyticus]
 gi|161346265|gb|ABX64939.1| recombinase A [Haemophilus haemolyticus]
 gi|161346267|gb|ABX64940.1| recombinase A [Haemophilus haemolyticus]
 gi|161346269|gb|ABX64941.1| recombinase A [Haemophilus haemolyticus]
 gi|161346271|gb|ABX64942.1| recombinase A [Haemophilus haemolyticus]
 gi|161346273|gb|ABX64943.1| recombinase A [Haemophilus haemolyticus]
 gi|161346275|gb|ABX64944.1| recombinase A [Haemophilus haemolyticus]
 gi|161346277|gb|ABX64945.1| recombinase A [Haemophilus haemolyticus]
 gi|161346279|gb|ABX64946.1| recombinase A [Haemophilus haemolyticus]
 gi|161346281|gb|ABX64947.1| recombinase A [Haemophilus influenzae]
 gi|161346283|gb|ABX64948.1| recombinase A [Haemophilus haemolyticus]
 gi|161346285|gb|ABX64949.1| recombinase A [Haemophilus influenzae]
 gi|161346287|gb|ABX64950.1| recombinase A [Haemophilus haemolyticus]
 gi|161346289|gb|ABX64951.1| recombinase A [Haemophilus haemolyticus]
 gi|161346291|gb|ABX64952.1| recombinase A [Haemophilus haemolyticus]
 gi|161346293|gb|ABX64953.1| recombinase A [Haemophilus influenzae]
 gi|161346295|gb|ABX64954.1| recombinase A [Haemophilus influenzae]
 gi|161346297|gb|ABX64955.1| recombinase A [Haemophilus influenzae]
 gi|161346299|gb|ABX64956.1| recombinase A [Haemophilus haemolyticus]
 gi|161346301|gb|ABX64957.1| recombinase A [Haemophilus haemolyticus]
 gi|161346303|gb|ABX64958.1| recombinase A [Haemophilus influenzae]
 gi|161346305|gb|ABX64959.1| recombinase A [Haemophilus influenzae]
 gi|161346307|gb|ABX64960.1| recombinase A [Haemophilus influenzae]
 gi|161346309|gb|ABX64961.1| recombinase A [Haemophilus influenzae]
 gi|161346311|gb|ABX64962.1| recombinase A [Haemophilus haemolyticus]
 gi|161346313|gb|ABX64963.1| recombinase A [Haemophilus influenzae]
 gi|161346315|gb|ABX64964.1| recombinase A [Haemophilus haemolyticus]
 gi|161346317|gb|ABX64965.1| recombinase A [Haemophilus influenzae]
 gi|161346319|gb|ABX64966.1| recombinase A [Haemophilus haemolyticus]
 gi|161346321|gb|ABX64967.1| recombinase A [Haemophilus haemolyticus]
 gi|161346323|gb|ABX64968.1| recombinase A [Haemophilus haemolyticus]
 gi|161346325|gb|ABX64969.1| recombinase A [Haemophilus influenzae]
 gi|161346327|gb|ABX64970.1| recombinase A [Haemophilus haemolyticus]
 gi|161346329|gb|ABX64971.1| recombinase A [Haemophilus influenzae]
 gi|161346331|gb|ABX64972.1| recombinase A [Haemophilus influenzae]
 gi|161346333|gb|ABX64973.1| recombinase A [Haemophilus haemolyticus]
 gi|161346335|gb|ABX64974.1| recombinase A [Haemophilus haemolyticus]
 gi|161346337|gb|ABX64975.1| recombinase A [Haemophilus influenzae]
 gi|161346339|gb|ABX64976.1| recombinase A [Haemophilus haemolyticus]
 gi|161346341|gb|ABX64977.1| recombinase A [Haemophilus haemolyticus]
 gi|161346343|gb|ABX64978.1| recombinase A [Haemophilus influenzae]
 gi|161346347|gb|ABX64980.1| recombinase A [Haemophilus influenzae]
 gi|161346349|gb|ABX64981.1| recombinase A [Haemophilus influenzae]
 gi|161346351|gb|ABX64982.1| recombinase A [Haemophilus influenzae]
 gi|161346353|gb|ABX64983.1| recombinase A [Haemophilus influenzae]
 gi|161346355|gb|ABX64984.1| recombinase A [Haemophilus influenzae]
 gi|161346357|gb|ABX64985.1| recombinase A [Haemophilus influenzae]
 gi|161346359|gb|ABX64986.1| recombinase A [Haemophilus influenzae]
 gi|161346361|gb|ABX64987.1| recombinase A [Haemophilus influenzae]
 gi|161346363|gb|ABX64988.1| recombinase A [Haemophilus influenzae]
 gi|161346365|gb|ABX64989.1| recombinase A [Haemophilus influenzae]
 gi|161346367|gb|ABX64990.1| recombinase A [Haemophilus influenzae]
 gi|161346369|gb|ABX64991.1| recombinase A [Haemophilus influenzae]
 gi|161346371|gb|ABX64992.1| recombinase A [Haemophilus influenzae]
 gi|161346373|gb|ABX64993.1| recombinase A [Haemophilus influenzae]
 gi|161346375|gb|ABX64994.1| recombinase A [Haemophilus influenzae]
 gi|161346377|gb|ABX64995.1| recombinase A [Haemophilus haemolyticus]
 gi|161346381|gb|ABX64997.1| recombinase A [Haemophilus influenzae]
 gi|161346385|gb|ABX64999.1| recombinase A [Haemophilus influenzae]
 gi|161346387|gb|ABX65000.1| recombinase A [Haemophilus haemolyticus]
 gi|161346389|gb|ABX65001.1| recombinase A [Haemophilus haemolyticus]
 gi|161346391|gb|ABX65002.1| recombinase A [Haemophilus haemolyticus]
 gi|161346393|gb|ABX65003.1| recombinase A [Haemophilus haemolyticus]
 gi|161346395|gb|ABX65004.1| recombinase A [Haemophilus haemolyticus]
 gi|161346397|gb|ABX65005.1| recombinase A [Haemophilus haemolyticus]
 gi|161346399|gb|ABX65006.1| recombinase A [Haemophilus haemolyticus]
 gi|161346401|gb|ABX65007.1| recombinase A [Haemophilus haemolyticus]
 gi|161346403|gb|ABX65008.1| recombinase A [Haemophilus haemolyticus]
 gi|161346405|gb|ABX65009.1| recombinase A [Haemophilus haemolyticus]
 gi|161346407|gb|ABX65010.1| recombinase A [Haemophilus haemolyticus]
 gi|161346409|gb|ABX65011.1| recombinase A [Haemophilus influenzae]
 gi|161346411|gb|ABX65012.1| recombinase A [Haemophilus influenzae]
 gi|161346413|gb|ABX65013.1| recombinase A [Haemophilus influenzae]
 gi|161346415|gb|ABX65014.1| recombinase A [Haemophilus influenzae]
 gi|161346417|gb|ABX65015.1| recombinase A [Haemophilus influenzae]
 gi|161346419|gb|ABX65016.1| recombinase A [Haemophilus influenzae]
 gi|161346421|gb|ABX65017.1| recombinase A [Haemophilus influenzae]
 gi|161346423|gb|ABX65018.1| recombinase A [Haemophilus influenzae]
 gi|161346425|gb|ABX65019.1| recombinase A [Haemophilus influenzae]
 gi|161346427|gb|ABX65020.1| recombinase A [Haemophilus influenzae]
 gi|161346429|gb|ABX65021.1| recombinase A [Haemophilus influenzae]
 gi|161346431|gb|ABX65022.1| recombinase A [Haemophilus influenzae]
 gi|161346433|gb|ABX65023.1| recombinase A [Haemophilus influenzae]
 gi|161346435|gb|ABX65024.1| recombinase A [Haemophilus influenzae]
 gi|161346437|gb|ABX65025.1| recombinase A [Haemophilus influenzae]
 gi|161346439|gb|ABX65026.1| recombinase A [Haemophilus influenzae]
 gi|161346441|gb|ABX65027.1| recombinase A [Haemophilus influenzae]
 gi|161346443|gb|ABX65028.1| recombinase A [Haemophilus influenzae]
 gi|161346447|gb|ABX65030.1| recombinase A [Haemophilus influenzae]
 gi|161346449|gb|ABX65031.1| recombinase A [Haemophilus influenzae]
 gi|161346451|gb|ABX65032.1| recombinase A [Haemophilus influenzae]
 gi|161346453|gb|ABX65033.1| recombinase A [Haemophilus influenzae]
 gi|161346455|gb|ABX65034.1| recombinase A [Haemophilus influenzae]
 gi|161346457|gb|ABX65035.1| recombinase A [Haemophilus influenzae]
 gi|161346459|gb|ABX65036.1| recombinase A [Haemophilus influenzae]
 gi|161346461|gb|ABX65037.1| recombinase A [Haemophilus haemolyticus]
 gi|161346463|gb|ABX65038.1| recombinase A [Haemophilus haemolyticus]
 gi|161346465|gb|ABX65039.1| recombinase A [Haemophilus haemolyticus]
 gi|161346467|gb|ABX65040.1| recombinase A [Haemophilus haemolyticus]
 gi|161346469|gb|ABX65041.1| recombinase A [Haemophilus haemolyticus]
 gi|161346471|gb|ABX65042.1| recombinase A [Haemophilus haemolyticus]
 gi|161346473|gb|ABX65043.1| recombinase A [Haemophilus haemolyticus]
 gi|161346475|gb|ABX65044.1| recombinase A [Haemophilus influenzae]
 gi|161346477|gb|ABX65045.1| recombinase A [Haemophilus haemolyticus]
 gi|161346479|gb|ABX65046.1| recombinase A [Haemophilus haemolyticus]
 gi|161346481|gb|ABX65047.1| recombinase A [Haemophilus haemolyticus]
 gi|161346483|gb|ABX65048.1| recombinase A [Haemophilus haemolyticus]
 gi|161346485|gb|ABX65049.1| recombinase A [Haemophilus haemolyticus]
 gi|161346487|gb|ABX65050.1| recombinase A [Haemophilus haemolyticus]
 gi|161346489|gb|ABX65051.1| recombinase A [Haemophilus haemolyticus]
 gi|161346491|gb|ABX65052.1| recombinase A [Haemophilus haemolyticus]
 gi|161346493|gb|ABX65053.1| recombinase A [Haemophilus haemolyticus]
 gi|161346495|gb|ABX65054.1| recombinase A [Haemophilus haemolyticus]
 gi|161346497|gb|ABX65055.1| recombinase A [Haemophilus haemolyticus]
 gi|161346501|gb|ABX65057.1| recombinase A [Haemophilus haemolyticus]
 gi|161346503|gb|ABX65058.1| recombinase A [Haemophilus haemolyticus]
 gi|161346505|gb|ABX65059.1| recombinase A [Haemophilus haemolyticus]
 gi|161346507|gb|ABX65060.1| recombinase A [Haemophilus haemolyticus]
 gi|161346509|gb|ABX65061.1| recombinase A [Haemophilus haemolyticus]
 gi|161346511|gb|ABX65062.1| recombinase A [Haemophilus haemolyticus]
 gi|161346515|gb|ABX65064.1| recombinase A [Haemophilus haemolyticus]
 gi|161346517|gb|ABX65065.1| recombinase A [Haemophilus haemolyticus]
 gi|161346519|gb|ABX65066.1| recombinase A [Haemophilus haemolyticus]
 gi|161346521|gb|ABX65067.1| recombinase A [Haemophilus haemolyticus]
 gi|161346525|gb|ABX65069.1| recombinase A [Haemophilus haemolyticus]
 gi|161346527|gb|ABX65070.1| recombinase A [Haemophilus haemolyticus]
 gi|161346529|gb|ABX65071.1| recombinase A [Haemophilus haemolyticus]
 gi|161346531|gb|ABX65072.1| recombinase A [Haemophilus haemolyticus]
 gi|161346533|gb|ABX65073.1| recombinase A [Haemophilus haemolyticus]
 gi|161346535|gb|ABX65074.1| recombinase A [Haemophilus haemolyticus]
 gi|161346537|gb|ABX65075.1| recombinase A [Haemophilus haemolyticus]
 gi|161346539|gb|ABX65076.1| recombinase A [Haemophilus haemolyticus]
 gi|161346541|gb|ABX65077.1| recombinase A [Haemophilus haemolyticus]
 gi|161346543|gb|ABX65078.1| recombinase A [Haemophilus haemolyticus]
 gi|161346545|gb|ABX65079.1| recombinase A [Haemophilus haemolyticus]
 gi|161346549|gb|ABX65081.1| recombinase A [Haemophilus haemolyticus]
 gi|161346553|gb|ABX65083.1| recombinase A [Haemophilus haemolyticus]
 gi|161346555|gb|ABX65084.1| recombinase A [Haemophilus haemolyticus]
 gi|161346557|gb|ABX65085.1| recombinase A [Haemophilus haemolyticus]
 gi|161346559|gb|ABX65086.1| recombinase A [Haemophilus haemolyticus]
 gi|161346561|gb|ABX65087.1| recombinase A [Haemophilus haemolyticus]
 gi|161346563|gb|ABX65088.1| recombinase A [Haemophilus haemolyticus]
 gi|290746173|gb|ADD51751.1| recombinase A [Haemophilus influenzae]
 gi|290746175|gb|ADD51752.1| recombinase A [Haemophilus influenzae]
 gi|290746177|gb|ADD51753.1| recombinase A [Haemophilus influenzae]
 gi|290746179|gb|ADD51754.1| recombinase A [Haemophilus influenzae]
 gi|290746181|gb|ADD51755.1| recombinase A [Haemophilus influenzae]
 gi|290746183|gb|ADD51756.1| recombinase A [Haemophilus influenzae]
 gi|290746185|gb|ADD51757.1| recombinase A [Haemophilus influenzae]
 gi|290746187|gb|ADD51758.1| recombinase A [Haemophilus influenzae]
 gi|290746189|gb|ADD51759.1| recombinase A [Haemophilus influenzae]
 gi|290746191|gb|ADD51760.1| recombinase A [Haemophilus influenzae]
 gi|290746193|gb|ADD51761.1| recombinase A [Haemophilus influenzae]
 gi|290746195|gb|ADD51762.1| recombinase A [Haemophilus influenzae]
 gi|290746197|gb|ADD51763.1| recombinase A [Haemophilus influenzae]
 gi|290746199|gb|ADD51764.1| recombinase A [Haemophilus influenzae]
 gi|290746201|gb|ADD51765.1| recombinase A [Haemophilus influenzae]
 gi|290746203|gb|ADD51766.1| recombinase A [Haemophilus influenzae]
 gi|290746205|gb|ADD51767.1| recombinase A [Haemophilus influenzae]
 gi|290746207|gb|ADD51768.1| recombinase A [Haemophilus influenzae]
          Length = 149

 Score =  233 bits (593), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 111/149 (74%), Positives = 128/149 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSLGLD+ALGIGG P GRIVEI+GPESSGKTTL L  IAQ+QK G TCAF+DAE
Sbjct: 1   VESISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGVD+K L +SQPD GEQALEI D LVRSGA+D+I++DSVAALTP+AEIE
Sbjct: 61  HALDPIYAAKLGVDVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193
           GDMG+S  G+QARLMSQALRKLT  I  +
Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTGQIKNA 149


>gi|213950716|gb|ACJ54603.1| recombination protein A [Bradyrhizobium japonicum]
          Length = 151

 Score =  233 bits (593), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 110/149 (73%), Positives = 132/149 (88%), Gaps = 1/149 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG      + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+
Sbjct: 3   KGSIMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTV 61

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD+
Sbjct: 62  AEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDV 121

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           +V+DSVAAL P+AE+EG+MG++LPG+QA+
Sbjct: 122 LVVDSVAALVPKAELEGEMGDALPGLQAQ 150


>gi|224174420|emb|CAR92628.1| recombinase A [Bradyrhizobium yuanmingense]
 gi|224174422|emb|CAR92629.1| recombinase A [Bradyrhizobium yuanmingense]
 gi|224174432|emb|CAR92634.1| recombinase A [Bradyrhizobium sp. LMG 11950]
 gi|224174434|emb|CAR92635.1| recombinase A [Bradyrhizobium sp. LMG 11955]
          Length = 147

 Score =  232 bits (592), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 111/148 (75%), Positives = 131/148 (88%), Gaps = 1/148 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A+
Sbjct: 1   SVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V
Sbjct: 60  AQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARL 178
           +DSVAAL P+AE+EG+MG++LPG+QARL
Sbjct: 120 VDSVAALVPKAELEGEMGDALPGLQARL 147


>gi|33087821|gb|AAP93041.1| recombination protein A [Yersinia frederiksenii]
          Length = 170

 Score =  232 bits (592), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 112/170 (65%), Positives = 139/170 (81%), Gaps = 2/170 (1%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTL 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RS
Sbjct: 59  TLQVIAAAQRAGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           GAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +
Sbjct: 119 GAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNA 168


>gi|224174444|emb|CAR92640.1| recombinase A [Bradyrhizobium sp. LMG 11797]
 gi|224174446|emb|CAR92641.1| recombinase A [Bradyrhizobium sp. LMG 8300]
 gi|224174448|emb|CAR92642.1| recombinase A [Blastobacter denitrificans]
          Length = 147

 Score =  232 bits (592), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 109/148 (73%), Positives = 131/148 (88%), Gaps = 1/148 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LG      + +E VS+GSLGLDIALGIGG PKGR++EIYGPESSGKTTLALHT+A+
Sbjct: 1   SVMKLGKNDRSMD-VETVSTGSLGLDIALGIGGLPKGRVIEIYGPESSGKTTLALHTVAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V
Sbjct: 60  AQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARL 178
           +DSVAAL P+AE+EG+MGESLPG+QARL
Sbjct: 120 VDSVAALVPKAELEGEMGESLPGLQARL 147


>gi|224174424|emb|CAR92630.1| recombinase A [Bradyrhizobium sp. LMG 10727]
 gi|224174426|emb|CAR92631.1| recombinase A [Bradyrhizobium sp. LMG 15269]
          Length = 147

 Score =  232 bits (592), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 111/148 (75%), Positives = 131/148 (88%), Gaps = 1/148 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LG      + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A+
Sbjct: 1   SVMKLGKSDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V
Sbjct: 60  AQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARL 178
           +DSVAAL P+AE+EG+MG++LPG+QARL
Sbjct: 120 VDSVAALVPKAELEGEMGDALPGLQARL 147


>gi|49036406|gb|AAT48872.1| RecA [Campylobacter fetus subsp. fetus]
          Length = 167

 Score =  232 bits (592), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 115/158 (72%), Positives = 130/158 (82%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I+ +SSGS+GLDIALGIGG PKGRIVEIYGPESSGKTTL LH IA+SQK GG CAFV
Sbjct: 10  IEPIDSISSGSIGLDIALGIGGVPKGRIVEIYGPESSGKTTLTLHLIAESQKVGGVCAFV 69

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           DAEHALD  YA+ LGVD  NL ISQPD GEQAL+I + L RSGAVD+IVIDSVAALTP++
Sbjct: 70  DAEHALDVKYAKNLGVDTDNLYISQPDFGEQALDIVETLARSGAVDLIVIDSVAALTPKS 129

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           EIEGDMG+   G+QARLMSQALRKLT  + +    +VF
Sbjct: 130 EIEGDMGDQHVGLQARLMSQALRKLTGVVHKMGTTVVF 167


>gi|49036404|gb|AAT48871.1| RecA [Campylobacter fetus subsp. fetus]
          Length = 167

 Score =  232 bits (592), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 117/168 (69%), Positives = 136/168 (80%), Gaps = 2/168 (1%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           +++LG +    E I+ +SSGS+GLDIALGIGG PKGRIVEIYGPESSGKTTL LH IA+S
Sbjct: 2   VLRLGDKE--IEPIDSISSGSIGLDIALGIGGVPKGRIVEIYGPESSGKTTLTLHLIAES 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GG CAFVDAEHALD  YA+ LGVD  NL ISQPD GEQAL+I + L RSGAVD+IVI
Sbjct: 60  QKVGGVCAFVDAEHALDVKYAKNLGVDTDNLYISQPDFGEQALDIVETLARSGAVDLIVI 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           DSVAALTP++EIEGDMG+   G+QARLMSQALRKLT  + +    +VF
Sbjct: 120 DSVAALTPKSEIEGDMGDQHVGLQARLMSQALRKLTGVVHKMGTTVVF 167


>gi|88705826|ref|ZP_01103535.1| RecA bacterial DNA recombination protein [Congregibacter litoralis
           KT71]
 gi|88699897|gb|EAQ97007.1| RecA bacterial DNA recombination protein [Congregibacter litoralis
           KT71]
          Length = 174

 Score =  232 bits (592), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 115/176 (65%), Positives = 142/176 (80%), Gaps = 3/176 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN  +K KALEAAL QI R +GKG +M++G    +   I  +S+GSLGLD+ALGIGG PK
Sbjct: 1   MN-ANKEKALEAALGQIDRQFGKGTVMRMGDSDRV--AIPSISTGSLGLDVALGIGGLPK 57

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI EI+GPESSGKTTL L  IA++QK GGT AF+DAEHALD IYA KLGV + +L++SQ
Sbjct: 58  GRICEIFGPESSGKTTLTLQVIAEAQKAGGTAAFIDAEHALDPIYAEKLGVQIDDLIVSQ 117

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           PDTGEQALE+ +MLVRSGAVD++V+DSVAALTPRAEIEGDMG+S  G+ + ++  A
Sbjct: 118 PDTGEQALEVAEMLVRSGAVDVLVVDSVAALTPRAEIEGDMGDSHVGLHSCVLPLA 173


>gi|37695722|gb|AAR00392.1| RecA [Vibrio parahaemolyticus]
          Length = 150

 Score =  232 bits (591), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 105/149 (70%), Positives = 132/149 (88%)

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           + G T AF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+D
Sbjct: 1   REGKTWAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVD 60

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG
Sbjct: 61  SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFG 120

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           +PE TTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 121 NPEPTTGGNALKFYASVRLDIRRTGAIKE 149


>gi|264668514|gb|ACY71636.1| recombinase protein A [Phyllobacterium trifolii]
          Length = 132

 Score =  232 bits (591), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 111/131 (84%), Positives = 123/131 (93%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL
Sbjct: 2   VSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+ LLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+M
Sbjct: 62  DPVYARKLGVDLQGLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEM 121

Query: 168 GESLPGMQARL 178
           G+SLPG+QARL
Sbjct: 122 GDSLPGLQARL 132


>gi|49036408|gb|AAT48873.1| RecA [Campylobacter fetus]
 gi|49036410|gb|AAT48874.1| RecA [Campylobacter fetus]
          Length = 167

 Score =  232 bits (591), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 116/168 (69%), Positives = 136/168 (80%), Gaps = 2/168 (1%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           +++LG +    E I+ +SSGS+GLDIALGIGG PKGRIVE+YGPESSGKTTL LH IA+S
Sbjct: 2   VLRLGDKE--IEPIDSISSGSIGLDIALGIGGVPKGRIVEVYGPESSGKTTLTLHLIAES 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GG CAFVDAEHALD  YA+ LGVD  NL ISQPD GEQAL+I + L RSGAVD+IVI
Sbjct: 60  QKVGGVCAFVDAEHALDVKYAKNLGVDTDNLYISQPDFGEQALDIVETLARSGAVDLIVI 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           DSVAALTP++EIEGDMG+   G+QARLMSQALRKLT  + +    +VF
Sbjct: 120 DSVAALTPKSEIEGDMGDQHVGLQARLMSQALRKLTGVVHKMGTTVVF 167


>gi|117573490|gb|ABK40921.1| recombinase [Pseudomonas sp. C6-16]
 gi|117573494|gb|ABK40923.1| recombinase [Pseudomonas sp. S7-29]
          Length = 155

 Score =  232 bits (591), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 115/157 (73%), Positives = 134/157 (85%), Gaps = 2/157 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           GA+M++G Q    + I  +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L  IA
Sbjct: 1   GAVMRMGDQDR--QAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           Q+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I
Sbjct: 59  QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVI 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           ++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+
Sbjct: 119 IVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKI 155


>gi|46203425|ref|ZP_00051550.2| COG0468: RecA/RadA recombinase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 180

 Score =  232 bits (591), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 124/178 (69%), Positives = 149/178 (83%), Gaps = 1/178 (0%)

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQ+LRKLT SIS S C+++FINQ+RMKIG+M+GSPETTTG  ALKFY+SVRLDIRRV +
Sbjct: 1   MSQSLRKLTGSISLSYCMVIFINQIRMKIGLMYGSPETTTGAYALKFYASVRLDIRRVST 60

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IKD+D   GN  RVKVVKNK+A PFKQVEFDIM+GEG+S  GEL+DLGVKA IV+KSGAW
Sbjct: 61  IKDRDEAIGNNVRVKVVKNKVAPPFKQVEFDIMFGEGVSKVGELVDLGVKAGIVEKSGAW 120

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           FS+  QRLGQGREN+K FLR+N +IA  IE+ +RQN+GLVAD +L E A  T +D D+
Sbjct: 121 FSYDSQRLGQGRENAKGFLRDNPDIAAKIEASIRQNSGLVADRIL-ENAKPTAEDLDE 177


>gi|161346383|gb|ABX64998.1| recombinase A [Haemophilus haemolyticus]
          Length = 149

 Score =  232 bits (591), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 111/149 (74%), Positives = 128/149 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSLGLD+ALGIGG P GRIVEI+GPESSGKTTL L  IAQ+QK G TCAF+DAE
Sbjct: 1   VESISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKEGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGVD+K L +SQPD GEQALEI D LVRSGA+D+I++DSVAALTP+AEIE
Sbjct: 61  HALDPIYAAKLGVDVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193
           GDMG+S  G+QARLMSQALRKLT  I  +
Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTGQIKNA 149


>gi|224174414|emb|CAR92625.1| recombinase A [Bradyrhizobium japonicum]
 gi|224174474|emb|CAR92655.1| recombinase A [Bradyrhizobium sp. RLA08]
 gi|224174476|emb|CAR92656.1| recombinase A [Bradyrhizobium sp. RLA09]
 gi|224174478|emb|CAR92657.1| recombinase A [Bradyrhizobium sp. RLA10]
 gi|224174480|emb|CAR92658.1| recombinase A [Bradyrhizobium sp. RLA11]
          Length = 147

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 109/148 (73%), Positives = 131/148 (88%), Gaps = 1/148 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LG      + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A+
Sbjct: 1   SVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V
Sbjct: 60  AQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARL 178
           +DSVAAL P+AE+EG+MG++LPG+QARL
Sbjct: 120 VDSVAALVPKAELEGEMGDALPGLQARL 147


>gi|161346547|gb|ABX65080.1| recombinase A [Haemophilus haemolyticus]
          Length = 149

 Score =  231 bits (589), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 110/149 (73%), Positives = 127/149 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSLGLD+ALGIGG P GRIVEI+GPESSGKTTL L  IAQ+QK G TCAF+DAE
Sbjct: 1   VESISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLG D+K L +SQPD GEQALEI D LVRSGA+D+I++DSVAALTP+AEIE
Sbjct: 61  HALDPIYAAKLGADVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193
           GDMG+S  G+QARLMSQALRKLT  I  +
Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTGQIKNA 149


>gi|38602317|emb|CAD58014.1| recombinase A [Gluconacetobacter sp. DST GL_03]
          Length = 142

 Score =  231 bits (589), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 108/142 (76%), Positives = 126/142 (88%)

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT S+SRS  +L+F+NQ+ +
Sbjct: 1   IDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGSVSRSNTMLIFLNQIXL 60

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFGSPETTTGGNALKFY+SV +DIRR+GSIKDKD +TGN TRVKVVKNKMA PF+Q
Sbjct: 61  KIGVMFGSPETTTGGNALKFYASVXMDIRRIGSIKDKDEVTGNHTRVKVVKNKMAPPFRQ 120

Query: 266 VEFDIMYGEGISFFGELIDLGV 287
           VEFDIMYGE I   GELIDLGV
Sbjct: 121 VEFDIMYGEWIIKVGELIDLGV 142


>gi|224174428|emb|CAR92632.1| recombinase A [Bradyrhizobium sp. LMG 10677]
 gi|224174430|emb|CAR92633.1| recombinase A [Bradyrhizobium sp. LMG 10691]
 gi|224174440|emb|CAR92638.1| recombinase A [Bradyrhizobium sp. LMG 15176]
 gi|224174442|emb|CAR92639.1| recombinase A [Bradyrhizobium sp. LMG 15181]
 gi|224174450|emb|CAR92643.1| recombinase A [Bradyrhizobium sp. LMG 10705]
 gi|224174452|emb|CAR92644.1| recombinase A [Bradyrhizobium sp. LMG 10706]
          Length = 147

 Score =  231 bits (589), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 110/148 (74%), Positives = 130/148 (87%), Gaps = 1/148 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LG      + +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+
Sbjct: 1   SVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V
Sbjct: 60  GQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARL 178
           IDSVAAL P+AE+EG+MG++LPG+QARL
Sbjct: 120 IDSVAALVPKAELEGEMGDALPGLQARL 147


>gi|224174410|emb|CAR92623.1| recombinase A [Bradyrhizobium canariense]
 gi|224174458|emb|CAR92647.1| recombinase A [Bradyrhizobium sp. MCLA07]
 gi|224174460|emb|CAR92648.1| recombinase A [Bradyrhizobium sp. MCLA12]
 gi|224174462|emb|CAR92649.1| recombinase A [Bradyrhizobium sp. MCLA22]
 gi|224174464|emb|CAR92650.1| recombinase A [Bradyrhizobium sp. MCLA23]
 gi|224174466|emb|CAR92651.1| recombinase A [Bradyrhizobium sp. MCAH03]
 gi|224174468|emb|CAR92652.1| recombinase A [Bradyrhizobium sp. MCAH06]
 gi|224174470|emb|CAR92653.1| recombinase A [Bradyrhizobium sp. MCAH12]
 gi|224174472|emb|CAR92654.1| recombinase A [Bradyrhizobium sp. MCAH13]
 gi|224174482|emb|CAR92659.1| recombinase A [Bradyrhizobium sp. MCOC04]
 gi|224174484|emb|CAR92660.1| recombinase A [Bradyrhizobium sp. MCOC05]
 gi|224174486|emb|CAR92661.1| recombinase A [Bradyrhizobium sp. MCOC23]
 gi|224174488|emb|CAR92662.1| recombinase A [Bradyrhizobium sp. MCOC24]
          Length = 147

 Score =  231 bits (589), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 110/148 (74%), Positives = 130/148 (87%), Gaps = 1/148 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LG      + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A+
Sbjct: 1   SVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V
Sbjct: 60  GQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARL 178
           IDSVAAL P+AE+EG+MG++LPG+QARL
Sbjct: 120 IDSVAALVPKAELEGEMGDALPGLQARL 147


>gi|300521781|gb|ADK26072.1| RecA protein [Vibrio communis]
          Length = 150

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 104/150 (69%), Positives = 132/150 (88%)

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 1   LLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 60

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 61  AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 120

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
            D + GN+TR+KV KNK+A+PFK+    IM
Sbjct: 121 GDEVVGNETRIKVFKNKIAAPFKEANTQIM 150


>gi|78059267|gb|ABB18010.1| recombinase A [Aggregatibacter aphrophilus]
 gi|78059271|gb|ABB18012.1| recombinase A [Aggregatibacter aphrophilus]
          Length = 149

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 111/149 (74%), Positives = 128/149 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GS GLD+ALGIGG P GRIVEI+GPESSGKTTL L  IA++QK G TCAF+DAE
Sbjct: 1   IEAISTGSFGLDLALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAEAQKAGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGVD+K LL+SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+A+IE
Sbjct: 61  HALDPIYASKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAKIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193
           GDMG+S  G+QARLMSQALRKLT  I  +
Sbjct: 121 GDMGDSHVGLQARLMSQALRKLTGQIKNA 149


>gi|224174404|emb|CAR92620.1| recombinase A [Bradyrhizobium betae]
 gi|224174406|emb|CAR92621.1| recombinase A [Bradyrhizobium betae]
          Length = 147

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 108/148 (72%), Positives = 131/148 (88%), Gaps = 1/148 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LG      + +E +SSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A+
Sbjct: 1   SVMKLGKNDRSMD-VEAISSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V
Sbjct: 60  AQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARL 178
           +DSVAAL P+AE+EG+MG++LPG+QARL
Sbjct: 120 VDSVAALVPKAELEGEMGDALPGLQARL 147


>gi|91981412|gb|ABE68048.1| recombinase [Pseudomonas sp. CHA0]
 gi|91981432|gb|ABE68058.1| recombinase [Pseudomonas sp. Pf-5]
 gi|91981440|gb|ABE68062.1| recombinase [Pseudomonas sp. PF]
 gi|91981442|gb|ABE68063.1| recombinase [Pseudomonas sp. PGNR1]
 gi|91981444|gb|ABE68064.1| recombinase [Pseudomonas sp. PGNL1]
 gi|91981446|gb|ABE68065.1| recombinase [Pseudomonas sp. K94.41]
 gi|91981448|gb|ABE68066.1| recombinase [Pseudomonas sp. S8-62]
          Length = 158

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 112/151 (74%), Positives = 130/151 (86%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + I  +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L  IAQ+QK G TCAFVD
Sbjct: 8   QAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAQAQKAGATCAFVD 67

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DSVAAL P+AE
Sbjct: 68  AEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAE 127

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           IEG+MG+   G+QARLMSQALRK+T +I  +
Sbjct: 128 IEGEMGDMHVGLQARLMSQALRKITGNIKNA 158


>gi|12082939|gb|AAG48670.1| RecA protein [Haemophilus influenzae]
          Length = 142

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 110/140 (78%), Positives = 125/140 (89%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSLGLD+ALGIGG P GRIVEI+GPESSGKTTL L  IAQ+QKTG TCAF+DAEHAL
Sbjct: 2   ISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKTGKTCAFIDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYA KLGVD+K L +SQPD GEQALEI D LVRSGA+D+I++DSVAALTP+AEIEGDM
Sbjct: 62  DPIYAAKLGVDVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIEGDM 121

Query: 168 GESLPGMQARLMSQALRKLT 187
           G+S  G+QARLMSQALRKLT
Sbjct: 122 GDSHMGLQARLMSQALRKLT 141


>gi|224174454|emb|CAR92645.1| recombinase A [Bradyrhizobium sp. LMG 15245]
 gi|224174456|emb|CAR92646.1| recombinase A [Bradyrhizobium sp. LMG 15253]
          Length = 147

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 109/148 (73%), Positives = 130/148 (87%), Gaps = 1/148 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LG      + +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+
Sbjct: 1   SVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V
Sbjct: 60  GQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARL 178
           +DSVAAL P+AE+EG+MG++LPG+QARL
Sbjct: 120 VDSVAALVPKAELEGEMGDALPGLQARL 147


>gi|91981426|gb|ABE68055.1| recombinase [Pseudomonas sp. P12]
          Length = 155

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 112/151 (74%), Positives = 130/151 (86%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + I  +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L  IAQ+QK G TCAFVD
Sbjct: 5   QAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAQAQKAGATCAFVD 64

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DSVAAL P+AE
Sbjct: 65  AEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAE 124

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           IEG+MG+   G+QARLMSQALRK+T +I  +
Sbjct: 125 IEGEMGDMHVGLQARLMSQALRKITGNIKNA 155


>gi|91981414|gb|ABE68049.1| recombinase [Pseudomonas sp. CM1'A2]
 gi|91981416|gb|ABE68050.1| recombinase [Pseudomonas sp. F113]
 gi|91981418|gb|ABE68051.1| recombinase [Pseudomonas sp. F96.27]
 gi|91981422|gb|ABE68053.1| recombinase [Pseudomonas sp. K94.31]
 gi|91981428|gb|ABE68056.1| recombinase [Pseudomonas sp. P97.30]
 gi|91981430|gb|ABE68057.1| recombinase [Pseudomonas sp. P97.38]
 gi|91981434|gb|ABE68059.1| recombinase [Pseudomonas sp. PILH1]
 gi|91981450|gb|ABE68067.1| recombinase [Pseudomonas sp. Q7-87]
 gi|91981452|gb|ABE68068.1| recombinase [Pseudomonas sp. TM1A3]
 gi|91981454|gb|ABE68069.1| recombinase [Pseudomonas sp. C*1A1]
 gi|91981456|gb|ABE68070.1| recombinase [Pseudomonas sp. TM1B2]
 gi|91981458|gb|ABE68071.1| recombinase [Pseudomonas sp. P97.6]
 gi|91981462|gb|ABE68073.1| recombinase [Pseudomonas sp. Q13-87]
 gi|91981464|gb|ABE68074.1| recombinase [Pseudomonas sp. Q128-87]
 gi|91981466|gb|ABE68075.1| recombinase [Pseudomonas sp. P97.26]
 gi|91981468|gb|ABE68076.1| recombinase [Pseudomonas sp. K93.3]
          Length = 158

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 112/151 (74%), Positives = 130/151 (86%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + I  +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L  IAQ+QK G TCAFVD
Sbjct: 8   QAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAQAQKAGATCAFVD 67

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DSVAAL P+AE
Sbjct: 68  AEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAE 127

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           IEG+MG+   G+QARLMSQALRK+T +I  +
Sbjct: 128 IEGEMGDMHVGLQARLMSQALRKITGNIKNA 158


>gi|224174412|emb|CAR92624.1| recombinase A [Bradyrhizobium elkanii]
          Length = 147

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 108/148 (72%), Positives = 130/148 (87%), Gaps = 1/148 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LG      + +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+
Sbjct: 1   SVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V
Sbjct: 60  GQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARL 178
           +DSVAAL P+AE+EG+MG++LPG+QARL
Sbjct: 120 VDSVAALVPKAELEGEMGDALPGLQARL 147


>gi|326631921|gb|ADZ98981.1| recombination protein A [Mesorhizobium sp. CCBAU 831015]
 gi|326631923|gb|ADZ98982.1| recombination protein A [Mesorhizobium sp. CCBAU 83908]
 gi|326631925|gb|ADZ98983.1| recombination protein A [Mesorhizobium sp. CCBAU 83915]
 gi|326631927|gb|ADZ98984.1| recombination protein A [Mesorhizobium sp. CCBAU 83919]
 gi|326631929|gb|ADZ98985.1| recombination protein A [Mesorhizobium sp. CCBAU 83923]
 gi|326631931|gb|ADZ98986.1| recombination protein A [Mesorhizobium sp. CCBAU 83935]
 gi|326631935|gb|ADZ98988.1| recombination protein A [Mesorhizobium sp. CCBAU 83943]
 gi|326631937|gb|ADZ98989.1| recombination protein A [Mesorhizobium sp. CCBAU 83948]
 gi|326631939|gb|ADZ98990.1| recombination protein A [Mesorhizobium sp. CCBAU 83953]
 gi|326631941|gb|ADZ98991.1| recombination protein A [Mesorhizobium sp. CCBAU 83963]
 gi|326631943|gb|ADZ98992.1| recombination protein A [Mesorhizobium sp. CCBAU 83978]
 gi|326631945|gb|ADZ98993.1| recombination protein A [Mesorhizobium sp. CCBAU 83979]
 gi|326631947|gb|ADZ98994.1| recombination protein A [Mesorhizobium sp. CCBAU 83980]
 gi|326631949|gb|ADZ98995.1| recombination protein A [Mesorhizobium sp. CCBAU 83994]
          Length = 127

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 107/127 (84%), Positives = 121/127 (95%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +Y
Sbjct: 1   SLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           ARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SL
Sbjct: 61  ARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSL 120

Query: 172 PGMQARL 178
           PG+QARL
Sbjct: 121 PGLQARL 127


>gi|91981420|gb|ABE68052.1| recombinase [Pseudomonas sp. K93.2]
 gi|91981424|gb|ABE68054.1| recombinase [Pseudomonas sp. K94.37]
 gi|91981436|gb|ABE68060.1| recombinase [Pseudomonas sp. Q37-87]
 gi|91981438|gb|ABE68061.1| recombinase [Pseudomonas sp. Q65c-80]
 gi|91981460|gb|ABE68072.1| recombinase [Pseudomonas sp. P96.25]
          Length = 157

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 112/148 (75%), Positives = 129/148 (87%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + I  +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L  IAQ+QK G TCAFVD
Sbjct: 8   QAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAQAQKAGATCAFVD 67

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DSVAAL P+AE
Sbjct: 68  AEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAE 127

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSI 190
           IEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 128 IEGEMGDMHVGLQARLMSQALRKITGNI 155


>gi|291246111|gb|ADD85180.1| RecA [Borrelia recurrentis]
          Length = 163

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 106/158 (67%), Positives = 137/158 (86%)

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTL L  IA+ QKTGG  AF+DAEHALD +YAR LGV++  L +SQPDTGEQAL+I +
Sbjct: 1   GKTTLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQPDTGEQALDIAE 60

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            L+RSG VD+IV+DSVAAL P+AEI+G+MG++  G+QARLMS+ALRK+T+ +S+S   ++
Sbjct: 61  YLIRSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGLQARLMSKALRKITAILSKSNACIM 120

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V
Sbjct: 121 FINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKV 158


>gi|91981408|gb|ABE68046.1| recombinase [Pseudomonas sp. Q2-87]
          Length = 156

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 112/148 (75%), Positives = 129/148 (87%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + I  +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L  IAQ+QK G TCAFVD
Sbjct: 8   QAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAQAQKAGATCAFVD 67

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DSVAAL P+AE
Sbjct: 68  AEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAE 127

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSI 190
           IEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 128 IEGEMGDMHVGLQARLMSQALRKITGNI 155


>gi|118185926|gb|ABK76576.1| RecA [Bacillus vietnamensis]
          Length = 171

 Score =  229 bits (585), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 112/172 (65%), Positives = 141/172 (81%), Gaps = 2/172 (1%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+LG +      +    SGSL LD ALGIGG+P+GRI+E+YGPESSGKT
Sbjct: 2   QIEKQFGKGSIMKLGEKTD--RNVVTCPSGSLALDAALGIGGYPRGRIIEVYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ALH IA+ Q  GG  AF+DAEHALD  YA+KLGV++  LL+SQPDTGEQALEI + LV
Sbjct: 60  TVALHAIAEVQAQGGQAAFIDAEHALDPEYAQKLGVNIDELLLSQPDTGEQALEIAEALV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           RSGAVD IV+DSVAAL P+AEIEG+MG++  G+QARLMSQALRKL+ +I++S
Sbjct: 120 RSGAVDAIVVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLSGAINKS 171


>gi|40641518|emb|CAE51305.1| recombinase A [Pasteurella multocida]
          Length = 149

 Score =  229 bits (585), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 111/149 (74%), Positives = 127/149 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VS+GSL LD+ALGIGG P GRIVEI+GPESSGKTTL L  IAQ+QK G TCAF+DAE
Sbjct: 1   VEAVSTGSLSLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKEGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGV++  LL+SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIE
Sbjct: 61  HALDPIYAAKLGVNVNELLVSQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193
           G+MG+S  G+QARLMSQALRKLT  I  S
Sbjct: 121 GEMGDSHMGLQARLMSQALRKLTGQIKNS 149


>gi|37727939|gb|AAR02355.1| RecA [Borrelia coriaceae]
          Length = 191

 Score =  229 bits (585), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 119/190 (62%), Positives = 155/190 (81%), Gaps = 2/190 (1%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA+ QK GG  AF+DAEHAL+ +YAR LGV++  L +SQPDTGEQALEI + L
Sbjct: 1   TTLTLQAIAEVQKNGGIAAFIDAEHALEPVYARALGVNIDELWLSQPDTGEQALEIAEYL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +RSG VD+IV+DSVAALTP+ EI+G+MG+   G+QARLMS+ALRK+T  +S+SK  ++FI
Sbjct: 61  IRSGGVDLIVVDSVAALTPQVEIDGEMGDFQIGLQARLMSKALRKITGILSKSKTCIMFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI--KDKDSITGNQTRVKVVKNK 258
           NQ+RMKIG+MFG+PETTTGGNALKFYSS+RL++R++  +     D I GN+ RVKVVKNK
Sbjct: 121 NQLRMKIGIMFGNPETTTGGNALKFYSSLRLEVRKIEQVTGHSADDIVGNKVRVKVVKNK 180

Query: 259 MASPFKQVEF 268
           +A PF+++E 
Sbjct: 181 VAPPFRKIEL 190


>gi|326631933|gb|ADZ98987.1| recombination protein A [Mesorhizobium sp. CCBAU 83939]
          Length = 127

 Score =  229 bits (584), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 106/127 (83%), Positives = 121/127 (95%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +Y
Sbjct: 1   SLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           ARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SL
Sbjct: 61  ARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSL 120

Query: 172 PGMQARL 178
           PG+QARL
Sbjct: 121 PGLQARL 127


>gi|117573482|gb|ABK40917.1| recombinase [Pseudomonas sp. S7-46]
 gi|117573492|gb|ABK40922.1| recombinase [Pseudomonas sp. C6-9]
          Length = 153

 Score =  229 bits (584), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 114/155 (73%), Positives = 132/155 (85%), Gaps = 2/155 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           GA+M++G Q    + I  +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L  IA
Sbjct: 1   GAVMRMGDQDR--QAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           Q+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I
Sbjct: 59  QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVI 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           ++DSVAAL P+AEIEG+MG+   G+QARLMSQALR
Sbjct: 119 IVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALR 153


>gi|33087841|gb|AAP93051.1| recombination protein A [Yersinia kristensenii]
          Length = 164

 Score =  229 bits (583), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 112/166 (67%), Positives = 136/166 (81%), Gaps = 2/166 (1%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           +I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +
Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNA 164


>gi|225629838|ref|ZP_03787754.1| recombinase A [Wolbachia endosymbiont of Muscidifurax uniraptor]
 gi|225591308|gb|EEH12432.1| recombinase A [Wolbachia endosymbiont of Muscidifurax uniraptor]
          Length = 170

 Score =  229 bits (583), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 111/159 (69%), Positives = 136/159 (85%), Gaps = 2/159 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+ A+SQI++ +GKGAIM+L  + +  E I+ +S+GS+ LD ALG+GG PKGRI+
Sbjct: 11  DKQKALDNAISQIEKAFGKGAIMKL--KQNPVEKIDTISTGSIALDSALGVGGLPKGRII 68

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTLALH IA++QK GG+CAF+DAEHALD +YARKLGV   +L+ISQPDTG
Sbjct: 69  EIFGPESSGKTTLALHVIAEAQKKGGSCAFIDAEHALDVLYARKLGVSTDDLVISQPDTG 128

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           EQAL I + LV SGAVD+IVIDSVAALTPRAEIEGDMG+
Sbjct: 129 EQALHIVEYLVCSGAVDVIVIDSVAALTPRAEIEGDMGD 167


>gi|262013560|gb|ACY06852.1| recombination protein A [Yersinia sp. APN5b-c]
          Length = 166

 Score =  229 bits (583), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 112/168 (66%), Positives = 136/168 (80%), Gaps = 2/168 (1%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KGAIM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGAIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTL 166


>gi|213012308|gb|ACJ38720.1| recombination-repair protein [Vibrio campbellii]
          Length = 147

 Score =  229 bits (583), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 103/147 (70%), Positives = 130/147 (88%)

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+R
Sbjct: 1   SQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMR 60

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D 
Sbjct: 61  KLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDE 120

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIM 271
           + GN+TR+KVVKNK+A+PFK+    IM
Sbjct: 121 VVGNETRIKVVKNKIAAPFKEANTQIM 147


>gi|22094651|gb|AAM91951.1|AF525717_1 RecA protein [Haemophilus influenzae]
 gi|22094653|gb|AAM91952.1|AF525718_1 RecA protein [Haemophilus influenzae]
 gi|22094655|gb|AAM91953.1|AF525719_1 RecA protein [Haemophilus influenzae]
 gi|22094657|gb|AAM91954.1|AF525720_1 RecA protein [Haemophilus influenzae]
 gi|12082917|gb|AAG48659.1| RecA protein [Haemophilus influenzae]
 gi|12082919|gb|AAG48660.1| RecA protein [Haemophilus influenzae]
 gi|12082921|gb|AAG48661.1| RecA protein [Haemophilus influenzae]
 gi|12082923|gb|AAG48662.1| RecA protein [Haemophilus influenzae]
 gi|12082925|gb|AAG48663.1| RecA protein [Haemophilus influenzae]
 gi|12082927|gb|AAG48664.1| RecA protein [Haemophilus influenzae]
 gi|12082929|gb|AAG48665.1| RecA protein [Haemophilus influenzae]
 gi|12082931|gb|AAG48666.1| RecA protein [Haemophilus influenzae]
 gi|12082933|gb|AAG48667.1| RecA protein [Haemophilus influenzae]
 gi|12082935|gb|AAG48668.1| RecA protein [Haemophilus influenzae]
 gi|12082937|gb|AAG48669.1| RecA protein [Haemophilus influenzae]
 gi|12082941|gb|AAG48671.1| RecA protein [Haemophilus influenzae]
 gi|12082943|gb|AAG48672.1| RecA protein [Haemophilus influenzae]
 gi|12082945|gb|AAG48673.1| RecA protein [Haemophilus influenzae]
 gi|12082947|gb|AAG48674.1| RecA protein [Haemophilus influenzae]
 gi|12082949|gb|AAG48675.1| RecA protein [Haemophilus influenzae]
 gi|12082951|gb|AAG48676.1| RecA protein [Haemophilus influenzae]
 gi|12082953|gb|AAG48677.1| RecA protein [Haemophilus influenzae]
 gi|12082955|gb|AAG48678.1| RecA protein [Haemophilus influenzae]
 gi|12082957|gb|AAG48679.1| RecA protein [Haemophilus influenzae]
 gi|12082959|gb|AAG48680.1| RecA protein [Haemophilus influenzae]
 gi|12082961|gb|AAG48681.1| RecA protein [Haemophilus influenzae]
 gi|12082963|gb|AAG48682.1| RecA protein [Haemophilus influenzae]
 gi|12082965|gb|AAG48683.1| RecA protein [Haemophilus influenzae]
 gi|12082967|gb|AAG48684.1| RecA protein [Haemophilus influenzae]
 gi|12082969|gb|AAG48685.1| RecA protein [Haemophilus influenzae]
 gi|12082971|gb|AAG48686.1| RecA protein [Haemophilus influenzae]
 gi|12082973|gb|AAG48687.1| RecA protein [Haemophilus influenzae]
 gi|12082975|gb|AAG48688.1| RecA protein [Haemophilus influenzae]
 gi|12082977|gb|AAG48689.1| RecA protein [Haemophilus influenzae]
 gi|12082979|gb|AAG48690.1| RecA protein [Haemophilus influenzae]
 gi|12082981|gb|AAG48691.1| RecA protein [Haemophilus influenzae]
 gi|12082983|gb|AAG48692.1| RecA protein [Haemophilus influenzae]
 gi|12082985|gb|AAG48693.1| RecA protein [Haemophilus influenzae]
 gi|12082987|gb|AAG48694.1| RecA protein [Haemophilus influenzae]
 gi|12082989|gb|AAG48695.1| RecA protein [Haemophilus influenzae]
 gi|30061234|gb|AAP19991.1| RecA protein [Haemophilus influenzae]
 gi|30061236|gb|AAP19992.1| RecA protein [Haemophilus influenzae]
 gi|30061238|gb|AAP19993.1| RecA protein [Haemophilus influenzae]
 gi|30061240|gb|AAP19994.1| RecA protein [Haemophilus influenzae]
 gi|30061242|gb|AAP19995.1| RecA protein [Haemophilus influenzae]
 gi|30061244|gb|AAP19996.1| RecA protein [Haemophilus influenzae]
 gi|30061246|gb|AAP19997.1| RecA protein [Haemophilus influenzae]
 gi|30061248|gb|AAP19998.1| RecA protein [Haemophilus influenzae]
 gi|30061250|gb|AAP19999.1| RecA protein [Haemophilus influenzae]
 gi|30061252|gb|AAP20000.1| RecA protein [Haemophilus influenzae]
 gi|30061254|gb|AAP20001.1| RecA protein [Haemophilus influenzae]
 gi|30061256|gb|AAP20002.1| RecA protein [Haemophilus influenzae]
 gi|30061258|gb|AAP20003.1| RecA protein [Haemophilus influenzae]
 gi|30061260|gb|AAP20004.1| RecA protein [Haemophilus influenzae]
 gi|32454003|gb|AAP74422.1| recombination protein [Haemophilus influenzae]
 gi|32454005|gb|AAP74423.1| recombination protein [Haemophilus influenzae]
 gi|32454007|gb|AAP74424.1| recombination protein [Haemophilus influenzae]
 gi|32454009|gb|AAP74425.1| recombination protein [Haemophilus influenzae]
 gi|32454011|gb|AAP74426.1| recombination protein [Haemophilus influenzae]
 gi|32454013|gb|AAP74427.1| recombination protein [Haemophilus influenzae]
 gi|32454015|gb|AAP74428.1| recombination protein [Haemophilus influenzae]
 gi|32454017|gb|AAP74429.1| recombination protein [Haemophilus influenzae]
 gi|53655929|gb|AAU89320.1| recombination protein [Haemophilus influenzae]
 gi|62125789|gb|AAX63808.1| RecA [Haemophilus quentini]
 gi|89257897|gb|ABD65227.1| RecA [Haemophilus sp. COAD036]
 gi|89257899|gb|ABD65228.1| RecA [Haemophilus sp. COAD165]
 gi|89257901|gb|ABD65229.1| RecA [Haemophilus sp. COAD591]
 gi|197293386|gb|ACH58234.1| recombinase A [Haemophilus sp. 11PS]
 gi|197293388|gb|ACH58235.1| recombinase A [Haemophilus sp. 16N]
 gi|197293390|gb|ACH58236.1| recombinase A [Haemophilus sp. 26E]
 gi|197293392|gb|ACH58237.1| recombinase A [Haemophilus sp. CCUG 11096]
 gi|197293394|gb|ACH58238.1| recombinase A [Haemophilus sp. CCUG 13929]
 gi|197293396|gb|ACH58239.1| recombinase A [Haemophilus sp. CCUG 15793]
 gi|197293398|gb|ACH58240.1| recombinase A [Haemophilus sp. CCUG 15794]
 gi|197293400|gb|ACH58241.1| recombinase A [Haemophilus sp. CCUG 15949]
 gi|197293402|gb|ACH58242.1| recombinase A [Haemophilus sp. CCUG 17210]
 gi|197293404|gb|ACH58243.1| recombinase A [Haemophilus sp. CCUG 17783]
 gi|197293406|gb|ACH58244.1| recombinase A [Haemophilus sp. CCUG 18082]
 gi|197293408|gb|ACH58245.1| recombinase A [Haemophilus sp. CCUG 23622]
 gi|197293410|gb|ACH58246.1| recombinase A [Haemophilus sp. CCUG 24145]
 gi|197293412|gb|ACH58247.1| recombinase A [Haemophilus sp. CCUG 30047]
 gi|197293416|gb|ACH58249.1| recombinase A [Haemophilus sp. CCUG 30218]
 gi|197293418|gb|ACH58250.1| recombinase A [Haemophilus sp. CCUG 31732]
 gi|197293420|gb|ACH58251.1| recombinase A [Haemophilus sp. CCUG 32367]
 gi|197293422|gb|ACH58252.1| recombinase A [Haemophilus sp. CCUG 35214]
 gi|197293424|gb|ACH58253.1| recombinase A [Haemophilus sp. CCUG 36040]
 gi|197293426|gb|ACH58254.1| recombinase A [Haemophilus sp. CCUG 43251]
 gi|197293428|gb|ACH58255.1| recombinase A [Haemophilus sp. CCUG 44661]
 gi|197293430|gb|ACH58256.1| recombinase A [Haemophilus sp. CCUG 50565]
 gi|197293432|gb|ACH58257.1| recombinase A [Haemophilus haemolyticus]
 gi|197293434|gb|ACH58258.1| recombinase A [Haemophilus sp. HK 676]
 gi|197293436|gb|ACH58259.1| recombinase A [Haemophilus sp. HK855]
 gi|197293438|gb|ACH58260.1| recombinase A [Haemophilus sp. PN24]
 gi|198385845|gb|ACH86233.1| RecA [Haemophilus influenzae]
 gi|259490892|gb|ACW82430.1| RecA protein [Haemophilus influenzae]
 gi|259490900|gb|ACW82434.1| RecA protein [Haemophilus influenzae]
          Length = 142

 Score =  229 bits (583), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 109/140 (77%), Positives = 124/140 (88%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSLGLD+ALGIGG P GRIVEI+GPESSGKTTL L  IAQ+QK G TCAF+DAEHAL
Sbjct: 2   ISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYA KLGVD+K L +SQPD GEQALEI D LVRSGA+D+I++DSVAALTP+AEIEGDM
Sbjct: 62  DPIYAAKLGVDVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIEGDM 121

Query: 168 GESLPGMQARLMSQALRKLT 187
           G+S  G+QARLMSQALRKLT
Sbjct: 122 GDSHMGLQARLMSQALRKLT 141


>gi|33087809|gb|AAP93035.1| recombination protein A [Yersinia enterocolitica]
          Length = 158

 Score =  228 bits (582), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 111/159 (69%), Positives = 133/159 (83%), Gaps = 2/159 (1%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 2   FGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAV
Sbjct: 60  VIAAAQRAGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           D+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RK
Sbjct: 120 DVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRK 158


>gi|33087797|gb|AAP93029.1| recombination protein A [Yersinia bercovieri]
          Length = 167

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 111/169 (65%), Positives = 137/169 (81%), Gaps = 2/169 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I
Sbjct: 59  AAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVI 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           ++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+
Sbjct: 119 IVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLI 167


>gi|269101878|ref|ZP_06154575.1| RecA protein [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268161776|gb|EEZ40272.1| RecA protein [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 187

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 106/184 (57%), Positives = 143/184 (77%), Gaps = 7/184 (3%)

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
           MQAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDI
Sbjct: 1   MQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDI 60

Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVD 293
           RR GSIKD + + GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  G+LIDLGVK  +++
Sbjct: 61  RRTGSIKDGEEVVGNETRIKVVKNKIAAPFKQAETQILYGQGFNRVGKLIDLGVKQKLIE 120

Query: 294 KSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           K+GAW+S+KG ++GQG+ N+  +L EN  IA+ IE  +R       + LL  P  +T +D
Sbjct: 121 KAGAWYSYKGDKIGQGKANAGKYLTENPAIADEIEKQIR-------ELLLTPPQEDTTED 173

Query: 354 ADKD 357
           A  D
Sbjct: 174 ASLD 177


>gi|157420096|gb|ABV55541.1| RecA [Acinetobacter rhizosphaerae]
 gi|157420098|gb|ABV55542.1| RecA [Acinetobacter rhizosphaerae]
          Length = 142

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 106/139 (76%), Positives = 123/139 (88%)

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTT+ L  IAQ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI 
Sbjct: 4   SGKTTMTLQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIA 63

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +  RS C++
Sbjct: 64  DMLVRSGAIDMIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMV 123

Query: 198 VFINQMRMKIGVMFGSPET 216
           +FINQ+RMKIGVMFGSPET
Sbjct: 124 IFINQIRMKIGVMFGSPET 142


>gi|37727943|gb|AAR02356.1| RecA [Borrelia turicatae]
          Length = 191

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 118/190 (62%), Positives = 155/190 (81%), Gaps = 2/190 (1%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  I++ QK GG  AF+DAEH LD +YA+ LGV++  L +SQPDTGEQALEI + L
Sbjct: 1   TTLTLQAISEVQKNGGIAAFIDAEHVLDPVYAKALGVNIDELWLSQPDTGEQALEIAEYL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +RSG VD+IV+DSVAALTP+AEI+G+MG+   G+QARLMS+ALRK+T  +S+SK  ++FI
Sbjct: 61  IRSGGVDLIVVDSVAALTPQAEIDGEMGDCQIGLQARLMSKALRKITGILSKSKTCIMFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI--KDKDSITGNQTRVKVVKNK 258
           NQ+RMKIGVMFG+PETTTGGNALKFYSS+RL++R++  +     D + GN+ RVKVVKNK
Sbjct: 121 NQLRMKIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTGSSADDVVGNKVRVKVVKNK 180

Query: 259 MASPFKQVEF 268
           +A PF+++E 
Sbjct: 181 VAPPFRKIEL 190


>gi|164612321|gb|ABY63442.1| RecA [Clostridium botulinum]
          Length = 141

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 105/140 (75%), Positives = 124/140 (88%)

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG  AF+DAEHALD  YAR LGVD+ NL++SQPDTGEQALEIT+ LVRSGAVD+IV+DSV
Sbjct: 2   GGAAAFIDAEHALDPAYARNLGVDIDNLIVSQPDTGEQALEITEALVRSGAVDVIVVDSV 61

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AAL PRAEIEG+MG+S  G+QARLMSQALRKL  SI++SKC+ +FINQ+R K+G+MFG+P
Sbjct: 62  AALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGSINKSKCVAIFINQLREKVGIMFGNP 121

Query: 215 ETTTGGNALKFYSSVRLDIR 234
           ETT GG ALKFYSSVRLD+R
Sbjct: 122 ETTPGGRALKFYSSVRLDVR 141


>gi|78059289|gb|ABB18021.1| recombinase A [Pasteurella aerogenes]
          Length = 149

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 108/148 (72%), Positives = 127/148 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LD+ALGIGG P GRIVEI+ PESSGKTTL L  IAQ+QK G TCAF+DAE
Sbjct: 1   VEAISTGSLSLDVALGIGGLPMGRIVEIFEPESSGKTTLTLSVIAQAQKQGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGVD+K LL+SQPD GEQALEI D+LVRSGAVD++++DSVAALTP+AEIE
Sbjct: 61  HALDPIYAAKLGVDVKELLVSQPDNGEQALEICDVLVRSGAVDVVIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISR 192
           GDMG+S   +QARLMSQALRK T+ I +
Sbjct: 121 GDMGDSHMCLQARLMSQALRKYTAQIKK 148


>gi|52630781|gb|AAU84858.1| RecA [Pandoraea sputorum]
          Length = 143

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 106/143 (74%), Positives = 123/143 (86%)

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL L  +A+ QK GGTCAF+DAEHALD  YA KLGV +  LLISQPDTGE
Sbjct: 1   IYGPESSGKTTLTLQVVAEMQKIGGTCAFIDAEHALDVGYANKLGVSVPELLISQPDTGE 60

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSG++D+I+IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I 
Sbjct: 61  QALEIADALVRSGSIDLIIIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIK 120

Query: 192 RSKCILVFINQMRMKIGVMFGSP 214
           R  C ++FINQ+ MKIGVMFG+P
Sbjct: 121 RKNCTVIFINQIPMKIGVMFGNP 143


>gi|257070322|ref|YP_003162640.1| ORF30 [Pseudomonas putida]
 gi|256260334|gb|ACU65273.1| recombinase A [Pseudomonas putida]
          Length = 247

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 109/159 (68%), Positives = 136/159 (85%), Gaps = 2/159 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           ++KAL+AAL QI++ +GKGA+M++G      + I  +S+GS+GLDIALGIGG PKGRIVE
Sbjct: 5   RNKALQAALGQIEKQFGKGAVMRMGEHER--QAIPAISTGSMGLDIALGIGGLPKGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL L  IA++Q+ G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGE
Sbjct: 63  IYGPESSGKTTLTLSVIAEAQRQGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           QALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG++
Sbjct: 123 QALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDA 161


>gi|6694815|gb|AAF25400.1|AF214753_1 RecA protein [Arthrobacter sp. 'SMCC ZAT277']
          Length = 162

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 107/162 (66%), Positives = 135/162 (83%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           +A +Q+ GG  AF+DAEHALD  YA+KLGVD   LL+SQPDTGEQALEI DML+ SG++D
Sbjct: 1   VASAQRNGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQPDTGEQALEIMDMLIGSGSID 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           I+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T  +S++K   +FINQ+R KI
Sbjct: 61  IVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKI 120

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           GV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+  +  GN+
Sbjct: 121 GVFFGSPETTTGGKALKFYASVRIDVRRIETLKEGVNPVGNR 162


>gi|224174408|emb|CAR92622.1| recombinase A [Bradyrhizobium canariense]
          Length = 147

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 109/148 (73%), Positives = 128/148 (86%), Gaps = 1/148 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LG      + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A+
Sbjct: 1   SVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V
Sbjct: 60  GQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARL 178
           IDSVAAL P+A  EG+MG++LPG+QARL
Sbjct: 120 IDSVAALVPKAXXEGEMGDALPGLQARL 147


>gi|213012344|gb|ACJ38738.1| recombination-repair protein [Vibrio harveyi]
          Length = 147

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 104/147 (70%), Positives = 129/147 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIACAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNAL 223
            +FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNAL 147


>gi|146431676|gb|ABQ40820.1| recombination-repair protein [Vibrio harveyi]
          Length = 140

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 102/140 (72%), Positives = 127/140 (90%)

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALT
Sbjct: 1   AFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALT 60

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           P+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTT
Sbjct: 61  PKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTT 120

Query: 219 GGNALKFYSSVRLDIRRVGS 238
           GGNALKFY+SVRLDIRR G+
Sbjct: 121 GGNALKFYASVRLDIRRTGA 140


>gi|300521198|gb|ADK25818.1| RecA [Vibrio vulnificus]
 gi|300521200|gb|ADK25819.1| RecA [Vibrio vulnificus]
 gi|300521202|gb|ADK25820.1| RecA [Vibrio vulnificus]
 gi|300521204|gb|ADK25821.1| RecA [Vibrio vulnificus]
 gi|300521208|gb|ADK25823.1| RecA [Vibrio vulnificus]
 gi|300521210|gb|ADK25824.1| RecA [Vibrio vulnificus]
 gi|300521212|gb|ADK25825.1| RecA [Vibrio vulnificus]
 gi|300521214|gb|ADK25826.1| RecA [Vibrio vulnificus]
 gi|300521216|gb|ADK25827.1| RecA [Vibrio vulnificus]
 gi|300521218|gb|ADK25828.1| RecA [Vibrio vulnificus]
          Length = 148

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 104/148 (70%), Positives = 128/148 (86%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  
Sbjct: 1   GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDQ 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 61  LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGV 209
           A+RKLT ++ +S C+ +FINQ+RMKIGV
Sbjct: 121 AMRKLTGNLKQSNCMCIFINQIRMKIGV 148


>gi|164612323|gb|ABY63443.1| RecA [Clostridium botulinum]
 gi|164612325|gb|ABY63444.1| RecA [Clostridium botulinum]
 gi|164612327|gb|ABY63445.1| RecA [Clostridium botulinum]
 gi|164612329|gb|ABY63446.1| RecA [Clostridium botulinum]
 gi|164612331|gb|ABY63447.1| RecA [Clostridium botulinum]
          Length = 141

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 105/140 (75%), Positives = 124/140 (88%)

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG  AF+DAEHALD  YAR LGVD+ NL++SQPDTGEQALEIT+ LVRSGAVD+IV+DSV
Sbjct: 2   GGAAAFIDAEHALDPSYARNLGVDIDNLIVSQPDTGEQALEITEALVRSGAVDVIVVDSV 61

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AAL PRAEIEG+MG+S  G+QARLMSQALRKL  SI++SKC+ +FINQ+R K+G+MFG+P
Sbjct: 62  AALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGSINKSKCVAIFINQLREKVGIMFGNP 121

Query: 215 ETTTGGNALKFYSSVRLDIR 234
           ETT GG ALKFYSSVRLD+R
Sbjct: 122 ETTPGGRALKFYSSVRLDVR 141


>gi|33087875|gb|AAP93068.1| recombination protein A [Yersinia rohdei]
          Length = 159

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 111/161 (68%), Positives = 134/161 (83%), Gaps = 2/161 (1%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 58

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L 
Sbjct: 59  TLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALT 118

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA
Sbjct: 119 RSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQA 159


>gi|33087849|gb|AAP93055.1| recombination protein A [Yersinia kristensenii]
          Length = 155

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 107/155 (69%), Positives = 129/155 (83%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEH
Sbjct: 1   ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG
Sbjct: 61  ALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           ++G+S  G+ AR+MSQA+RKL  ++  +  +L+FI
Sbjct: 121 EIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFI 155


>gi|325650756|emb|CBY89561.1| RecA protein [Rhizobium leguminosarum]
          Length = 153

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 118/154 (76%), Positives = 137/154 (88%), Gaps = 1/154 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+ GS  ++ E IE +S+GS GLDIALG+GG P+GRI+EIYGPESSGK TLAL  I
Sbjct: 1   KGSIMKXGSNENVXE-IETISTGSXGLDIALGVGGLPRGRIIEIYGPESSGKXTLALQXI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVD +NLLISQPDTGEQALEITD LVRSG VD+
Sbjct: 60  AEAQKKGGXCAFVDAEHALDPVYARKLGVDXQNLLISQPDTGEQALEITDTLVRSGXVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           +V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQA
Sbjct: 120 LVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQA 153


>gi|164612319|gb|ABY63441.1| RecA [Clostridium botulinum]
          Length = 141

 Score =  226 bits (577), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 104/141 (73%), Positives = 124/141 (87%)

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG  AF+DAEHALD  YAR LGVD+ NL++SQPDTGEQALEIT+ LVRSGAVD+IV+DS
Sbjct: 1   VGGAAAFIDAEHALDPSYARNLGVDIDNLIVSQPDTGEQALEITEALVRSGAVDVIVVDS 60

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           VAAL PRAEIEG+MG++  G+QARLMSQALRKL  SI++SKC+ +FINQ+R K+G+MFG+
Sbjct: 61  VAALVPRAEIEGEMGDAHVGLQARLMSQALRKLAGSINKSKCVAIFINQLREKVGIMFGN 120

Query: 214 PETTTGGNALKFYSSVRLDIR 234
           PETT GG ALKFYSSVRLD+R
Sbjct: 121 PETTPGGRALKFYSSVRLDVR 141


>gi|164612317|gb|ABY63440.1| RecA [Clostridium botulinum]
          Length = 141

 Score =  226 bits (577), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 104/141 (73%), Positives = 124/141 (87%)

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG  AF+DAEHALD  YAR LGVD+ NL++SQPDTGEQALEIT+ LVRSGAVD+IV+DS
Sbjct: 1   VGGAAAFIDAEHALDPSYARNLGVDIDNLIVSQPDTGEQALEITEALVRSGAVDVIVVDS 60

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           VAAL PRAEIEG+MG++  G+QARLMSQALRKL  SI++SKC+ +FINQ+R K+G+MFG+
Sbjct: 61  VAALVPRAEIEGEMGDTHVGLQARLMSQALRKLAGSINKSKCVAIFINQLREKVGIMFGN 120

Query: 214 PETTTGGNALKFYSSVRLDIR 234
           PETT GG ALKFYSSVRLD+R
Sbjct: 121 PETTPGGRALKFYSSVRLDVR 141


>gi|197293414|gb|ACH58248.1| recombinase A [Haemophilus sp. CCUG 30048]
          Length = 142

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 108/140 (77%), Positives = 123/140 (87%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSLGLD+ALGIGG P GRIVEI+GPESSGKTTL L  IAQ+QK G TCAF+DAEHAL
Sbjct: 2   ISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYA KLGVD+K L +SQPD GEQALEI D LVRSGA+D+I++DSVAALTP+AEIEG M
Sbjct: 62  DPIYAAKLGVDVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIEGHM 121

Query: 168 GESLPGMQARLMSQALRKLT 187
           G+S  G+QARLMSQALRKLT
Sbjct: 122 GDSHMGLQARLMSQALRKLT 141


>gi|58697768|ref|ZP_00372879.1| recA protein [Wolbachia endosymbiont of Drosophila simulans]
 gi|58535726|gb|EAL59602.1| recA protein [Wolbachia endosymbiont of Drosophila simulans]
          Length = 170

 Score =  226 bits (576), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 110/159 (69%), Positives = 135/159 (84%), Gaps = 2/159 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+ A+SQI++ +GKGAIM+L  + +  E I+ +S+GS+ LD ALG+GG PKGRI+
Sbjct: 11  DKQKALDNAISQIEKAFGKGAIMKL--KQNPVEKIDTISTGSIALDSALGVGGLPKGRII 68

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTLALH IA++QK GG+CAF+DAEHALD +YARKLGV   +L+ISQPDTG
Sbjct: 69  EIFGPESSGKTTLALHVIAEAQKKGGSCAFIDAEHALDVLYARKLGVSTDDLVISQPDTG 128

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           EQAL I + LV SGAVD+IV DSVAALTPRAEIEGDMG+
Sbjct: 129 EQALHIVEYLVCSGAVDVIVNDSVAALTPRAEIEGDMGD 167


>gi|325305328|gb|ADZ06012.1| RecA [Aeromonas veronii bv. sobria]
          Length = 135

 Score =  226 bits (576), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 105/135 (77%), Positives = 124/135 (91%)

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEI
Sbjct: 1   EHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEI 60

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 61  EGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNAL 120

Query: 224 KFYSSVRLDIRRVGS 238
           KFY+SVRLDIRR+G+
Sbjct: 121 KFYASVRLDIRRIGA 135


>gi|309274214|gb|ADO63751.1| recombinase A [Pseudomonas jessenii]
          Length = 143

 Score =  226 bits (576), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 104/143 (72%), Positives = 129/143 (90%)

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+   G+Q
Sbjct: 1   GVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQ 60

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           ARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR
Sbjct: 61  ARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRR 120

Query: 236 VGSIKDKDSITGNQTRVKVVKNK 258
            G++K+ D + G++TRVKVVKNK
Sbjct: 121 TGAVKEGDEVVGSETRVKVVKNK 143


>gi|298103536|emb|CBH19579.1| recombinase A [Mesorhizobium sp. CGS22]
          Length = 142

 Score =  226 bits (576), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 107/142 (75%), Positives = 126/142 (88%), Gaps = 1/142 (0%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           ALSQI+R +GKG+IM+LG+   + E I  VS+GSLGLDIALG+GG P+GRI+EIYGPESS
Sbjct: 1   ALSQIERAFGKGSIMRLGANEQVVE-IGTVSTGSLGLDIALGVGGLPRGRIIEIYGPESS 59

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D
Sbjct: 60  GKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICD 119

Query: 139 MLVRSGAVDIIVIDSVAALTPR 160
            LVRSGA+D++V+DS A LTPR
Sbjct: 120 TLVRSGAIDVLVVDSAAVLTPR 141


>gi|33087813|gb|AAP93037.1| recombination protein A [Yersinia frederiksenii ATCC 33641]
 gi|33087861|gb|AAP93061.1| recombination protein A [Yersinia mollaretii]
          Length = 164

 Score =  226 bits (575), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 110/165 (66%), Positives = 134/165 (81%), Gaps = 2/165 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I
Sbjct: 59  AAQRAGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVI 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           ++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  + 
Sbjct: 119 IVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNAN 163


>gi|29119657|emb|CAD79377.1| RecA protein [Burkholderia cepacia]
          Length = 138

 Score =  226 bits (575), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 102/138 (73%), Positives = 125/138 (90%)

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 1   EGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNAL 60

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+I
Sbjct: 61  KFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEII 120

Query: 284 DLGVKASIVDKSGAWFSF 301
           DLGV+A IVDK+GAW+S+
Sbjct: 121 DLGVQAKIVDKAGAWYSY 138


>gi|24251198|gb|AAN46111.1| RecA [Bacillus megaterium]
          Length = 162

 Score =  226 bits (575), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 106/161 (65%), Positives = 134/161 (83%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGAVDIIV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I++SK I +FI
Sbjct: 1   VRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAINKSKTIAIFI 60

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K  + I GN+TR+KVVKNK+A
Sbjct: 61  NQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIVGNKTRIKVVKNKVA 120

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            PF+  E DIMYGEGIS  GE++D+  +  IV KSG+W+S+
Sbjct: 121 PPFRAAEVDIMYGEGISKEGEILDIASELDIVQKSGSWYSY 161


>gi|33087851|gb|AAP93056.1| recombination protein A [Yersinia kristensenii]
          Length = 164

 Score =  225 bits (574), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 110/165 (66%), Positives = 134/165 (81%), Gaps = 2/165 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I
Sbjct: 59  AAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVI 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           ++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  + 
Sbjct: 119 IVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNAN 163


>gi|312271202|gb|ADQ57298.1| RecA [Rhizobium pongamiae]
          Length = 132

 Score =  225 bits (574), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 107/128 (83%), Positives = 120/128 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 5   VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 64

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL++LLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE
Sbjct: 65  HALDPVYARKLGVDLQSLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 124

Query: 165 GDMGESLP 172
           G+MG+SLP
Sbjct: 125 GEMGDSLP 132


>gi|9909576|emb|CAC04279.1| RecA protein [Brevundimonas bullata]
          Length = 147

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 106/133 (79%), Positives = 122/133 (91%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G LGLDIALGIGG P+GR++E++GPESSGKTTLALHT+A+ QK GG  AFVDAEHALD 
Sbjct: 15  TGXLGLDIALGIGGLPRGRVIEVFGPESSGKTTLALHTVAEIQKAGGVAAFVDAEHALDP 74

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
            YA+KLGV+L NLL+SQPDTGEQALEI D LVRSGAVDI+V+DSVAALTPRAEIEG+MG+
Sbjct: 75  GYAQKLGVNLDNLLMSQPDTGEQALEIVDTLVRSGAVDIVVVDSVAALTPRAEIEGEMGD 134

Query: 170 SLPGMQARLMSQA 182
           SLPG+QARLMSQA
Sbjct: 135 SLPGLQARLMSQA 147


>gi|10121208|gb|AAG13116.1|AF143801_1 RecA [Burkholderia cepacia]
          Length = 138

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 108/138 (78%), Positives = 124/138 (89%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAE
Sbjct: 1   IQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIE
Sbjct: 61  HALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQA 182
           G+MG+SLPG+QARLMSQA
Sbjct: 121 GEMGDSLPGLQARLMSQA 138


>gi|133711814|gb|ABO36632.1| putative recA protein [Solanum lycopersicum]
          Length = 395

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 143/329 (43%), Positives = 211/329 (64%), Gaps = 12/329 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEG---IEVVSSGSLGLDIALGIGGFPKG 67
           +K+ AL +ALSQ++  + K + + L      F G     V+ +GSL LD+ALG+GG PKG
Sbjct: 58  EKASALHSALSQLEGDFCKESRLSLQR----FFGARRTPVIPTGSLRLDLALGLGGLPKG 113

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYG E+SGKTTLALH I ++QK GG CA++D E+ ++   A  +GV+++NLLISQP
Sbjct: 114 RIVEIYGQEASGKTTLALHVIREAQKLGGYCAYLDVENGMNPSLAEAIGVNVENLLISQP 173

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D+ E  L I + L +SG++D+IV+DSVAAL P+ EI+  + +S  G+Q+++M+QALRK+ 
Sbjct: 174 DSAENLLSIVNTLTKSGSMDVIVVDSVAALVPQLEIDATLCDSPKGLQSKIMTQALRKIH 233

Query: 188 SSISRSKCILVFINQMRM-KIGVMFGS---PETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
            S+  S  +++FINQ+R    G++ GS    E T GGNAL FY+++RL   R   +K + 
Sbjct: 234 YSLGNSSTLIIFINQVRRSNKGLVRGSGCMDEVTCGGNALPFYAAIRLRTIRKQLLKTRH 293

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            ITG +  VKVVKNK+A    + E  I YG G     E+++L  +  +V K G  +   G
Sbjct: 294 KITGLRICVKVVKNKLAPAATEAELSIQYGGGFCIEPEVLELACEHEVVLKEGGSYFIDG 353

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLR 332
           Q L   R++++ +L  N +I   I   LR
Sbjct: 354 QVL-NSRQDAEDYLASNGDILAKIVETLR 381


>gi|213012358|gb|ACJ38745.1| recombination-repair protein [Vibrio harveyi]
          Length = 144

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 100/143 (69%), Positives = 126/143 (88%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSG
Sbjct: 2   LELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSG 61

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+R
Sbjct: 62  AIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIR 121

Query: 205 MKIGVMFGSPETTTGGNALKFYS 227
           MKIGVMFG+PETTTGGNALKFY+
Sbjct: 122 MKIGVMFGNPETTTGGNALKFYA 144


>gi|91981410|gb|ABE68047.1| recombinase [Pseudomonas sp. PITR2]
          Length = 149

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 109/142 (76%), Positives = 124/142 (87%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + I  +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L  IAQ+QK G TCAFVD
Sbjct: 8   QAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAQAQKAGATCAFVD 67

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DSVAAL P+AE
Sbjct: 68  AEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAE 127

Query: 163 IEGDMGESLPGMQARLMSQALR 184
           IEG+MG+   G+QARLMSQALR
Sbjct: 128 IEGEMGDMHVGLQARLMSQALR 149


>gi|10121206|gb|AAG13115.1|AF143800_1 RecA [Burkholderia cepacia]
          Length = 138

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 108/138 (78%), Positives = 124/138 (89%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAE
Sbjct: 1   IQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIE
Sbjct: 61  HALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQA 182
           G+MG+SLPG+QARLMSQA
Sbjct: 121 GEMGDSLPGLQARLMSQA 138


>gi|300521206|gb|ADK25822.1| RecA [Vibrio vulnificus]
          Length = 148

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 103/148 (69%), Positives = 127/148 (85%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P G IVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  
Sbjct: 1   GGLPMGGIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDQ 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 61  LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGV 209
           A+RKLT ++ +S C+ +FINQ+RMKIGV
Sbjct: 121 AMRKLTGNLKQSNCMCIFINQIRMKIGV 148


>gi|10121202|gb|AAG13113.1|AF143798_1 RecA [Burkholderia vietnamiensis]
 gi|10121204|gb|AAG13114.1|AF143799_1 RecA [Burkholderia vietnamiensis]
          Length = 138

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 108/138 (78%), Positives = 124/138 (89%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAE
Sbjct: 1   IQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIE
Sbjct: 61  HALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQA 182
           G+MG+SLPG+QARLMSQA
Sbjct: 121 GEMGDSLPGLQARLMSQA 138


>gi|10121210|gb|AAG13117.1|AF143802_1 RecA [Burkholderia cepacia]
          Length = 138

 Score =  223 bits (568), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 107/138 (77%), Positives = 124/138 (89%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGT AF+DAE
Sbjct: 1   IQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAELQKLGGTAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIE
Sbjct: 61  HALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQA 182
           G+MG+SLPG+QARLMSQA
Sbjct: 121 GEMGDSLPGLQARLMSQA 138


>gi|325650704|emb|CBY89535.1| RecA protein [Rhizobium leguminosarum]
          Length = 153

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 115/148 (77%), Positives = 136/148 (91%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSLGLBIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFV AE
Sbjct: 6   IETISTGSLGLBIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVXAE 65

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV L+NLLISQPDTGEQ LZI D LVRSG VB++V+DSVAALTPRAEIZ
Sbjct: 66  HALDPVYARKLGVXLQNLLISQPDTGEQXLZIXDTLVRSGXVBVLVVDSVAALTPRAEIZ 125

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISR 192
           G+MG+SLPG+QARLMSQALRKLT+SIS+
Sbjct: 126 GEMGDSLPGLQARLMSQALRKLTASISK 153


>gi|119874726|gb|ABM05840.1| RecA [Yersinia pestis]
          Length = 153

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 105/150 (70%), Positives = 126/150 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTLAL  IA +Q+ G TCAF+DAE
Sbjct: 4   VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLALQVIAAAQREGKTCAFIDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIE
Sbjct: 64  HALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSK 194
           G++G+S  G+ AR+MSQA+RKL  ++  + 
Sbjct: 124 GEIGDSHMGLAARMMSQAMRKLAGNLKNAN 153


>gi|180050837|gb|ACB87032.1| RecA [Bacteriovorax sp. JS7]
          Length = 150

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 111/152 (73%), Positives = 129/152 (84%), Gaps = 3/152 (1%)

Query: 27  YGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
           +GKGAIM+L G Q  +     V+S+G LGLD+ALG+GG PKGRI+EIYGPESSGKTTL L
Sbjct: 1   FGKGAIMRLDGDQPQVKT--PVISTGCLGLDLALGVGGIPKGRIIEIYGPESSGKTTLTL 58

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
           H  AQ QK GGT AFVDAEHALD+ YA KLGVD+ N LISQPD+GEQALEITDMLVRSGA
Sbjct: 59  HIAAQCQKQGGTVAFVDAEHALDTTYAAKLGVDIPNTLISQPDSGEQALEITDMLVRSGA 118

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           VD++++DSVAALTPRAE+EGDMG+S  G+QAR
Sbjct: 119 VDLLIVDSVAALTPRAELEGDMGDSHMGLQAR 150


>gi|118197632|ref|YP_874025.1| RecA/RadA recombinase [Thermus phage phiYS40]
 gi|116266323|gb|ABJ91406.1| RecA/RadA recombinase [Thermus phage phiYS40]
          Length = 339

 Score =  223 bits (567), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 118/254 (46%), Positives = 176/254 (69%), Gaps = 5/254 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E+VS+G L +D+ALGIGG P G+I+E+YG ESSGKTT +L TI+Q QK    CAF+DAE+
Sbjct: 34  EIVSTGILTVDLALGIGGIPMGKIIEVYGQESSGKTTFSLITISQMQKANKICAFIDAEN 93

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           + D I+A  LGV+L  LL+ + ++ E++LE  + L+  G V  +V DS+ A    ++   
Sbjct: 94  SFDPIWAETLGVNLDELLLIEANSLEESLEKLEFLINQG-VKYVVYDSIVAPPTVSQNNA 152

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           D G+SL G++AR++S AL KL   I ++K  ++FINQ+R KIGV +G+PETT GG ALKF
Sbjct: 153 DYGDSLVGVRARILSMALSKLMPIIRQNKATIMFINQIREKIGV-YGNPETTPGGRALKF 211

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           +SS+RL++R+   IKD+D   G++  VKV KNK A P ++ +F + Y +G S+  +  ++
Sbjct: 212 FSSLRLNMRK-KPIKDEDGEIGDEVHVKVEKNKFAPPMRKAKFLLFY-DG-SYTIDYPEI 268

Query: 286 GVKASIVDKSGAWF 299
             +  +V KSGAW+
Sbjct: 269 LSQLGLVKKSGAWY 282


>gi|91981470|gb|ABE68077.1| recombinase [Pseudomonas sp. Q12-87]
          Length = 149

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 108/142 (76%), Positives = 124/142 (87%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + I  +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L  IAQ+QK G TCAFVD
Sbjct: 8   QAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAQAQKAGATCAFVD 67

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DSVAAL P+AE
Sbjct: 68  AEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAE 127

Query: 163 IEGDMGESLPGMQARLMSQALR 184
           IEG+MG+   G+QARLMS+ALR
Sbjct: 128 IEGEMGDMHVGLQARLMSRALR 149


>gi|119874724|gb|ABM05839.1| RecA [Yersinia pestis]
          Length = 153

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 104/150 (69%), Positives = 125/150 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 4   VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIE
Sbjct: 64  HALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIE 123

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSK 194
           G++G+S  G+ AR+MSQA+RKL  ++  + 
Sbjct: 124 GEIGDSHMGLAARMMSQAMRKLAGNLKNAN 153


>gi|213950718|gb|ACJ54604.1| recombination protein A [Bradyrhizobium elkanii]
          Length = 144

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 104/143 (72%), Positives = 125/143 (87%), Gaps = 1/143 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           +M+LG      + +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ 
Sbjct: 3   MMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEG 61

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+
Sbjct: 62  QKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVV 121

Query: 152 DSVAALTPRAEIEGDMGESLPGM 174
           DSVAAL P+AE+EG+MG++LPG+
Sbjct: 122 DSVAALVPKAELEGEMGDALPGL 144


>gi|222619856|gb|EEE55988.1| hypothetical protein OsJ_04733 [Oryza sativa Japonica Group]
          Length = 392

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 137/347 (39%), Positives = 220/347 (63%), Gaps = 22/347 (6%)

Query: 1   MDYRKE-----MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGL 55
           +DY  +     + +++K   L  A+SQ+   + + + + L  + S      V+S+GSL L
Sbjct: 49  LDYETDPPLDGVKVLEKESTLSVAVSQLASDFDRESNLCL-ERFSRTRRTPVISTGSLKL 107

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           DIALGIGG PKGR+VE++G E+SGKTTLALH + ++QK GG CA++DAE+A +   A  +
Sbjct: 108 DIALGIGGLPKGRMVELFGKEASGKTTLALHVVKEAQKKGGCCAYIDAENAFNPSVAEAI 167

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GV+++ LLI+QPD+ E +L I + LV  G++D++V+DSVAAL PR E+EG++  +   +Q
Sbjct: 168 GVNVEKLLIAQPDSAENSLSIVNTLV-GGSIDVVVVDSVAALIPRCELEGEIYMNSEDVQ 226

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKI------GVMFGSPETTTGGNALKFYSSV 229
           +RLM++ALRK+  ++SRS+ +++F+NQ+R K+      G+     E   GGNAL FY++V
Sbjct: 227 SRLMTRALRKIQHTLSRSETLIIFVNQVRTKLSSNQTPGIF---KEVACGGNALGFYAAV 283

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMA-SPFKQVEFDIMYGEGISFFGELIDLGVK 288
           R+   R     ++   TG    V+++KNK+A +  K+   DI +G+GI +  E+++L   
Sbjct: 284 RMRTSRRELRYNEAQATGIGISVQIIKNKLAPATLKEAGIDIRFGKGICYESEILELASS 343

Query: 289 ASIV--DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
             ++  D SG W +  G+ L    E  K FLREN  +A+ I   +R+
Sbjct: 344 LGVIMKDDSGYWIN--GEFLPNKAEAEK-FLRENAAVADEICGTMRR 387


>gi|218189711|gb|EEC72138.1| hypothetical protein OsI_05156 [Oryza sativa Indica Group]
          Length = 410

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 137/347 (39%), Positives = 220/347 (63%), Gaps = 22/347 (6%)

Query: 1   MDYRKE-----MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGL 55
           +DY  +     + +++K   L  A+SQ+   + + + + L  + S      V+S+GSL L
Sbjct: 67  LDYETDPPLDGVKVLEKESTLSVAVSQLASDFDRESNLCL-ERFSRTRRTPVISTGSLKL 125

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           DIALGIGG PKGR+VE++G E+SGKTTLALH + ++QK GG CA++DAE+A +   A  +
Sbjct: 126 DIALGIGGLPKGRMVELFGKEASGKTTLALHVVKEAQKKGGCCAYIDAENAFNPSVAEAI 185

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GV+++ LLI+QPD+ E +L I + LV  G++D++V+DSVAAL PR E+EG++  +   +Q
Sbjct: 186 GVNVEKLLIAQPDSAENSLSIVNTLV-GGSIDVVVVDSVAALIPRCELEGEIYMNSEDVQ 244

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKI------GVMFGSPETTTGGNALKFYSSV 229
           +RLM++ALRK+  ++SRS+ +++F+NQ+R K+      G+     E   GGNAL FY++V
Sbjct: 245 SRLMTRALRKIQHTLSRSETLIIFVNQVRTKLSSNQTPGIF---KEVACGGNALGFYAAV 301

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMA-SPFKQVEFDIMYGEGISFFGELIDLGVK 288
           R+   R     ++   TG    V+++KNK+A +  K+   DI +G+GI +  E+++L   
Sbjct: 302 RMRTSRRELRYNEAQATGIGISVQIIKNKLAPATLKEAGIDIRFGKGICYESEILELASS 361

Query: 289 ASIV--DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
             ++  D SG W +  G+ L    E  K FLREN  +A+ I   +R+
Sbjct: 362 LGVIMKDDSGYWIN--GEFLPNKAEAEK-FLRENAAVADEICGTMRR 405


>gi|33087871|gb|AAP93066.1| recombination protein A [Yersinia rohdei]
          Length = 158

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 109/159 (68%), Positives = 131/159 (82%), Gaps = 2/159 (1%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPES
Sbjct: 2   AALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 59

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI 
Sbjct: 60  SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEIC 119

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ A
Sbjct: 120 DALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAA 158


>gi|328477887|gb|EGF47840.1| RecA recombinase [Lactobacillus rhamnosus MTCC 5462]
          Length = 177

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 103/162 (63%), Positives = 137/162 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+VVS+G L LD+ALG+GG P+GRIVEIYGPESSGKTT+AL TIA+ QKTGG  A++DAE
Sbjct: 11  IDVVSTGILSLDLALGVGGLPRGRIVEIYGPESSGKTTIALQTIAELQKTGGKAAYIDAE 70

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA +LGV++ +LL+SQP++GEQ LEI +ML+ S AVD++VIDSVAAL P+AEIE
Sbjct: 71  NAMDPKYAAELGVNIDDLLLSQPNSGEQGLEIAEMLIESAAVDVVVIDSVAALVPKAEIE 130

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G +G+S  G+QARLMSQALRK+  +I+ +  +++FINQ+R K
Sbjct: 131 GAIGDSHVGLQARLMSQALRKMAGTINNTNTLVIFINQLREK 172


>gi|291042496|gb|ADD71873.1| RecA [Rhizobium sp. W3]
          Length = 134

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 106/135 (78%), Positives = 122/135 (90%), Gaps = 1/135 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG+  S+ E +E VS+GSL LDIALGIGG PKGRI+E+YGPESSGKTTLAL T
Sbjct: 1   GKGSIMKLGANESVVE-VETVSTGSLSLDIALGIGGLPKGRIIEVYGPESSGKTTLALQT 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA++QK GG CAFVDAEHALD +YARKLGV L+NLLISQPDTGEQALEITD LVRSGA+D
Sbjct: 60  IAEAQKKGGICAFVDAEHALDPVYARKLGVXLQNLLISQPDTGEQALEITDTLVRSGAID 119

Query: 148 IIVIDSVAALTPRAE 162
           ++V+DSVAALTPRAE
Sbjct: 120 VLVVDSVAALTPRAE 134


>gi|218661201|ref|ZP_03517131.1| recombinase A [Rhizobium etli IE4771]
          Length = 148

 Score =  219 bits (559), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 106/148 (71%), Positives = 123/148 (83%), Gaps = 4/148 (2%)

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           GSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQTRVKVVKNKMA PFKQVEFDIM
Sbjct: 1   GSPETTTGGNALKFYASVRLDIRRIGSVKEREEVIGNQTRVKVVKNKMAPPFKQVEFDIM 60

Query: 272 YGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLL 331
           YGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQGREN+K FLR+N ++A  IE  L
Sbjct: 61  YGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGRENAKTFLRDNPDLAREIELAL 120

Query: 332 RQNAGLVADSLLQEPAINTKDDADKDDT 359
           RQNAGL+AD  LQ    N   DAD  D+
Sbjct: 121 RQNAGLIADRFLQ----NGGPDADDGDS 144


>gi|116335012|ref|YP_802507.1| RecA recombinase [Candidatus Carsonella ruddii PV]
 gi|116235293|dbj|BAF35141.1| RecA recombinase [Candidatus Carsonella ruddii PV]
          Length = 296

 Score =  219 bits (558), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 107/250 (42%), Positives = 171/250 (68%), Gaps = 3/250 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + +E +S+GSL +D  LGIGG P GRI+EIYG ESSGKTT A   I ++QK G  CA++D
Sbjct: 8   KNVEFISTGSLNVDFILGIGGLPYGRIIEIYGQESSGKTTFAFSIIKEAQKVGDICAYID 67

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            EH +D  Y   LG++LK LLI QP+ GE+  EI+  L+ S  V +I+IDS+AA+ P  E
Sbjct: 68  VEHCIDVNYIENLGINLKTLLIFQPENGEKVFEISQKLINSTYVKLIIIDSIAAIIPELE 127

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           I  +  ++  G  +R +S+ L+K+   + ++  +L+ INQ+R+KI   F + E +TGGNA
Sbjct: 128 IYNN--DNNIGSHSRFLSKNLKKIIPLLRKNNVLLILINQVRIKIS-NFYNKEISTGGNA 184

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           +KFYSS+R++++R+G +K K++I G + +V V+KNK++ P++  +  ++Y  GI    E+
Sbjct: 185 VKFYSSIRIELKRIGFLKSKNNIIGQEIKVNVLKNKLSKPYRDTKIYLIYSYGIYKILEI 244

Query: 283 IDLGVKASIV 292
           I+ G+K +++
Sbjct: 245 INFGLKFNLI 254


>gi|6694841|gb|AAF25426.1|AF214779_1 RecA protein [Arthrobacter agilis]
          Length = 155

 Score =  219 bits (557), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 102/149 (68%), Positives = 127/149 (85%)

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           + GG  AF+DAEHALD  YA++LGVD   LL+SQPDTGEQALEI DML+ SG++DI+VID
Sbjct: 1   RNGGIAAFIDAEHALDPEYAKRLGVDTDALLVSQPDTGEQALEIMDMLIGSGSIDIVVID 60

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T  +S++K   +FINQ+R KIGV FG
Sbjct: 61  SVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFG 120

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           SPETTTGG ALKFY+SVR+D+RR+ ++K+
Sbjct: 121 SPETTTGGKALKFYASVRIDVRRIETLKE 149


>gi|70724316|gb|AAZ07707.1| RecA [Lactobacillus brevis DSM 20054]
          Length = 150

 Score =  218 bits (556), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 100/150 (66%), Positives = 129/150 (86%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+P+ RIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  YA  LGV++ +
Sbjct: 1   GGYPRRRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPAYATALGVNIDD 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQ
Sbjct: 61  LLLSQPDTGEQGLQIADALISSGAIDIVVVDSVAALAPRAEIEGEMGDAHVGLQARLMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           ALRKL+ +I+++K I +FINQ+R K+GVMF
Sbjct: 121 ALRKLSGTINKTKTIALFINQIREKVGVMF 150


>gi|293629584|gb|ADE58559.1| recombinase A [Rhizobium daejeonense]
          Length = 121

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 105/121 (86%), Positives = 114/121 (94%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEH
Sbjct: 1   ETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG
Sbjct: 61  ALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEG 120

Query: 166 D 166
           +
Sbjct: 121 E 121


>gi|321399592|emb|CBJ49370.1| recombinase A [Marichromatium sp. JA499]
          Length = 133

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 101/130 (77%), Positives = 118/130 (90%)

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AFVDAEHALD +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++
Sbjct: 3   QKLGGTAAFVDAEHALDPVYAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIV 62

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMF
Sbjct: 63  DSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMF 122

Query: 212 GSPETTTGGN 221
           GSPE T GGN
Sbjct: 123 GSPEATPGGN 132


>gi|33087811|gb|AAP93036.1| recombination protein A [Yersinia frederiksenii]
          Length = 151

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 107/153 (69%), Positives = 127/153 (83%), Gaps = 2/153 (1%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +I++DSVAALTP+AEIEG++G+S  G+ AR+MS
Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMS 151


>gi|160375130|gb|ABX38946.1| recombinase protein A [Mesorhizobium tianshanense]
          Length = 132

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 103/133 (77%), Positives = 120/133 (90%), Gaps = 1/133 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALH
Sbjct: 1   FGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+
Sbjct: 60  TVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAI 119

Query: 147 DIIVIDSVAALTP 159
           D++V+DSVAALTP
Sbjct: 120 DVLVVDSVAALTP 132


>gi|255686524|gb|ACU28751.1| recombination protein A [Yersinia ruckeri]
 gi|255686526|gb|ACU28752.1| recombination protein A [Yersinia ruckeri]
 gi|255686528|gb|ACU28753.1| recombination protein A [Yersinia ruckeri ATCC 29473]
 gi|255686530|gb|ACU28754.1| recombination protein A [Yersinia aldovae ATCC 35236]
          Length = 140

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 103/139 (74%), Positives = 120/139 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 2   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++
Sbjct: 62  DPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI 121

Query: 168 GESLPGMQARLMSQALRKL 186
           G+S  G+ AR+MSQA+RKL
Sbjct: 122 GDSHMGLAARMMSQAMRKL 140


>gi|255686532|gb|ACU28755.1| recombination protein A [Yersinia bercovieri ATCC 43970]
 gi|255686534|gb|ACU28756.1| recombination protein A [Yersinia enterocolitica]
 gi|255686536|gb|ACU28757.1| recombination protein A [Yersinia enterocolitica]
 gi|255686538|gb|ACU28758.1| recombination protein A [Yersinia enterocolitica]
 gi|255686542|gb|ACU28760.1| recombination protein A [Yersinia enterocolitica]
 gi|255686546|gb|ACU28762.1| recombination protein A [Yersinia pestis]
          Length = 140

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 103/139 (74%), Positives = 120/139 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 2   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++
Sbjct: 62  DPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI 121

Query: 168 GESLPGMQARLMSQALRKL 186
           G+S  G+ AR+MSQA+RKL
Sbjct: 122 GDSHMGLAARMMSQAMRKL 140


>gi|118185928|gb|ABK76577.1| RecA [Bacillus vietnamensis]
 gi|118185930|gb|ABK76578.1| RecA [Bacillus vietnamensis]
          Length = 156

 Score =  216 bits (551), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 103/144 (71%), Positives = 125/144 (86%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SGSL LD ALGIGG+P+GRI+E+YGPESSGKTT+ALH IA+ Q  GG  AF+DAEHALD 
Sbjct: 13  SGSLALDAALGIGGYPRGRIIEVYGPESSGKTTVALHAIAEVQAQGGQAAFIDAEHALDP 72

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
            YA+KLGV++  LL+SQPDTGEQALEI + LVRSGAVD IV+DSVAAL P+AEIEG+MG+
Sbjct: 73  EYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDAIVVDSVAALVPKAEIEGEMGD 132

Query: 170 SLPGMQARLMSQALRKLTSSISRS 193
           +  G+QARLMSQALRKL+ +I++S
Sbjct: 133 AHVGLQARLMSQALRKLSGAINKS 156


>gi|293629588|gb|ADE58561.1| recombinase A [Rhizobium selenitireducens]
          Length = 125

 Score =  216 bits (551), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 104/122 (85%), Positives = 114/122 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 4   IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIE
Sbjct: 64  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIE 123

Query: 165 GD 166
           G+
Sbjct: 124 GE 125


>gi|260748902|gb|ACX48758.1| recombinase protein A [Mesorhizobium sp. AC98b]
 gi|260748904|gb|ACX48759.1| recombinase protein A [Mesorhizobium sp. AC98c]
 gi|260748906|gb|ACX48760.1| recombinase protein A [Mesorhizobium sp. AC98e]
 gi|260748908|gb|ACX48761.1| recombinase protein A [Mesorhizobium sp. AC100c]
 gi|260748910|gb|ACX48762.1| recombinase protein A [Mesorhizobium sp. AC100e]
 gi|260748914|gb|ACX48764.1| recombinase protein A [Mesorhizobium sp. AC28c2]
 gi|260748917|gb|ACX48765.1| recombinase protein A [Mesorhizobium sp. AC39a]
 gi|260748919|gb|ACX48766.1| recombinase protein A [Mesorhizobium sp. AC39c1]
 gi|260748923|gb|ACX48768.1| recombinase protein A [Mesorhizobium sp. AC39e1]
 gi|260748931|gb|ACX48771.1| recombinase protein A [Mesorhizobium sp. AC99c]
 gi|260748933|gb|ACX48772.1| recombinase protein A [Mesorhizobium sp. AC99e]
          Length = 134

 Score =  216 bits (551), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 102/135 (75%), Positives = 121/135 (89%), Gaps = 1/135 (0%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           LSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSG
Sbjct: 1   LSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSG 59

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D 
Sbjct: 60  KTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDT 119

Query: 140 LVRSGAVDIIVIDSV 154
           LVRSGA+D++V+DSV
Sbjct: 120 LVRSGAIDVLVVDSV 134


>gi|6694820|gb|AAF25405.1|AF214758_1 RecA protein [Arthrobacter sp. 'SMCC G919']
          Length = 145

 Score =  216 bits (550), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 104/145 (71%), Positives = 121/145 (83%)

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
           H +A +Q+ GG  AF+DAEHALD  YA KLGVD   LL+SQPDTGEQALEI DMLV SG+
Sbjct: 1   HAVANAQRNGGIAAFIDAEHALDPDYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGS 60

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T  +S++K   +FINQ+R 
Sbjct: 61  LDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLRE 120

Query: 206 KIGVMFGSPETTTGGNALKFYSSVR 230
           KIGV FGSPETTTGG ALKFY+SVR
Sbjct: 121 KIGVFFGSPETTTGGKALKFYASVR 145


>gi|260748912|gb|ACX48763.1| recombinase protein A [Mesorhizobium sp. AC21a2]
          Length = 134

 Score =  215 bits (548), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 103/135 (76%), Positives = 120/135 (88%), Gaps = 1/135 (0%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           LSQI+R +GKG+IM+LG+     E IE V +GSLGLDIALG+GG P+GRIVEIYGPESSG
Sbjct: 1   LSQIERAFGKGSIMRLGANEQAVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSG 59

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D 
Sbjct: 60  KTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDT 119

Query: 140 LVRSGAVDIIVIDSV 154
           LVRSGA+D++V+DSV
Sbjct: 120 LVRSGAIDVLVVDSV 134


>gi|730488|sp|P41055|RECA_STRCT RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|416191|emb|CAA53673.1| reca peptidase [Streptomyces cattleya]
          Length = 142

 Score =  215 bits (548), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 102/142 (71%), Positives = 124/142 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL LH +A + + GG+ AF+DAEHALD  YA+KLGVD+ +L++SQPD GEQALEI
Sbjct: 1   SSGKTTLTLHAVANAPRLGGSVAFIDAEHALDPEYAKKLGVDIDSLILSQPDNGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+TS++++SK  
Sbjct: 61  VDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITSALNQSKTT 120

Query: 197 LVFINQMRMKIGVMFGSPETTT 218
            +FINQ+R KIGVMFGSPETTT
Sbjct: 121 AIFINQLREKIGVMFGSPETTT 142


>gi|296040840|gb|ADG85387.1| recombination protein A [Yersinia massiliensis]
 gi|296040842|gb|ADG85388.1| recombination protein A [Yersinia massiliensis]
 gi|296040846|gb|ADG85390.1| recombination protein A [Yersinia massiliensis]
          Length = 139

 Score =  215 bits (548), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 102/138 (73%), Positives = 119/138 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 2   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++
Sbjct: 62  DPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI 121

Query: 168 GESLPGMQARLMSQALRK 185
           G+S  G+ AR+MSQA+RK
Sbjct: 122 GDSHMGLAARMMSQAMRK 139


>gi|260748921|gb|ACX48767.1| recombinase protein A [Mesorhizobium sp. AC39d]
          Length = 134

 Score =  215 bits (548), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 102/135 (75%), Positives = 120/135 (88%), Gaps = 1/135 (0%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           LSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI EIYGPESSG
Sbjct: 1   LSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIXEIYGPESSG 59

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D 
Sbjct: 60  KTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDT 119

Query: 140 LVRSGAVDIIVIDSV 154
           LVRSGA+D++V+DSV
Sbjct: 120 LVRSGAIDVLVVDSV 134


>gi|255686540|gb|ACU28759.1| recombination protein A [Yersinia enterocolitica]
          Length = 140

 Score =  215 bits (548), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 102/139 (73%), Positives = 119/139 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG G  P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 2   ISTGSLSLDIALGAGALPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++
Sbjct: 62  DPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI 121

Query: 168 GESLPGMQARLMSQALRKL 186
           G+S  G+ AR+MSQA+RKL
Sbjct: 122 GDSHMGLAARMMSQAMRKL 140


>gi|24251204|gb|AAN46112.1| RecA [Virgibacillus marismortui]
          Length = 157

 Score =  215 bits (547), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 104/157 (66%), Positives = 129/157 (82%)

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I + LVRSGAVDIIV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I++SK 
Sbjct: 1   IAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAINKSKT 60

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
             +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR  S+K  + + GN+ R+KVV
Sbjct: 61  TAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAESLKQGNDMVGNKARIKVV 120

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           KNK+A PFKQ E DIMYGEGIS  GE++D+G    IV
Sbjct: 121 KNKVAPPFKQAEVDIMYGEGISKEGEILDIGSDLDIV 157


>gi|255686544|gb|ACU28761.1| recombination protein A [Yersinia pestis]
          Length = 140

 Score =  215 bits (547), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 103/139 (74%), Positives = 119/139 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 2   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++
Sbjct: 62  DPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI 121

Query: 168 GESLPGMQARLMSQALRKL 186
           G+S  G+ AR+MSQA RKL
Sbjct: 122 GDSHMGLAARMMSQAKRKL 140


>gi|260748929|gb|ACX48770.1| recombinase protein A [Mesorhizobium sp. AC99b]
          Length = 134

 Score =  215 bits (547), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 101/135 (74%), Positives = 120/135 (88%), Gaps = 1/135 (0%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           LSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPE SG
Sbjct: 1   LSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPECSG 59

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D 
Sbjct: 60  KTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDT 119

Query: 140 LVRSGAVDIIVIDSV 154
           LVRSGA+D++V+DSV
Sbjct: 120 LVRSGAIDVLVVDSV 134


>gi|180050823|gb|ACB87025.1| RecA [Bacteriovorax sp. JS1]
          Length = 146

 Score =  215 bits (547), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 102/147 (69%), Positives = 125/147 (85%), Gaps = 1/147 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           AIM+L S+  + E +  +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+
Sbjct: 1   AIMKLDSEKKL-EKVPAISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRSGAVD+++
Sbjct: 60  CQKAGGTVAFIDAEHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSGAVDLLI 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQAR 177
           +DSVAALTPRAE+EGDMG+S  G+QAR
Sbjct: 120 VDSVAALTPRAELEGDMGDSHMGLQAR 146


>gi|260748927|gb|ACX48769.1| recombinase protein A [Mesorhizobium sp. AC99a]
          Length = 134

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 101/134 (75%), Positives = 120/134 (89%), Gaps = 1/134 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           SQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGK
Sbjct: 2   SQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGK 60

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D L
Sbjct: 61  TTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTL 120

Query: 141 VRSGAVDIIVIDSV 154
           VRSGA+D++V+DSV
Sbjct: 121 VRSGAIDVLVVDSV 134


>gi|75758395|ref|ZP_00738518.1| RecA protein [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|74494121|gb|EAO57214.1| RecA protein [Bacillus thuringiensis serovar israelensis ATCC
           35646]
          Length = 362

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 126/333 (37%), Positives = 189/333 (56%), Gaps = 19/333 (5%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           ++E  +S I +  G+  I   G   +    I++ SSGSL +D+ALG GG   GRI+E +G
Sbjct: 2   SIEKLMSTINKQLGEDTI---GYSVNTGPTIKLFSSGSLTMDLALG-GGVANGRIIEYFG 57

Query: 75  PESSGKTTLALHTIAQSQ-KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
              +GKTTL    IA+ Q K  G  AF+D EHA++   A++ GVDL  L+   P T E A
Sbjct: 58  NSMAGKTTLMFLHIAEVQRKNEGYVAFIDMEHAMNKELAQQYGVDLDKLIYVNPKTAENA 117

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ++I D L+RSG V +I +DSV+A+ P   +E    +   G+ AR MS  ++KLT      
Sbjct: 118 VDIADSLIRSGEVRLIAVDSVSAMVPTKIVESSAEQQTMGLLARFMSTTMQKLTGIAYEH 177

Query: 194 KCILVFINQMRMKIGVM--FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
            C + FINQ+R KIG     G+P TT+GG AL FY+S R+ ++    IKD + I G+  +
Sbjct: 178 DCTVGFINQIREKIGGFSPAGTPTTTSGGRALPFYASQRIQVKMGEYIKDGNDIIGHWVK 237

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           +KVVKNK+A PFK+  F ++YG G+    E+  + + A  V K+G W     +  G+ R+
Sbjct: 238 IKVVKNKIAIPFKEAAFPLIYGHGVDRIDEVAQVAILAGFVQKNGGWCRIIDEETGEIRQ 297

Query: 312 NSKI------------FLRENIEIAENIESLLR 332
           +  I            FL E+ ++A  +E+ +R
Sbjct: 298 HKGIELKFNGQAKLVAFLHEHKDLAAELEAKIR 330


>gi|228904767|ref|ZP_04068821.1| hypothetical protein bthur0014_58910 [Bacillus thuringiensis IBL
           4222]
 gi|228854781|gb|EEM99385.1| hypothetical protein bthur0014_58910 [Bacillus thuringiensis IBL
           4222]
          Length = 356

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 120/303 (39%), Positives = 177/303 (58%), Gaps = 16/303 (5%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFVDA 103
           I++ SSGSL +D+ALG GG   GRI+E +G   +GKTTL    IA+ Q K  G  AF+D 
Sbjct: 23  IKLFSSGSLTMDLALG-GGVANGRIIEYFGNSMAGKTTLMFLHIAEVQRKNEGYVAFIDM 81

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHA++   A++ GVDL  L+   P T E A++I D L+RSG V +I +DSV+A+ P   +
Sbjct: 82  EHAMNKELAQQYGVDLDKLIYVNPKTAENAVDIADSLIRSGEVRLIAVDSVSAMVPTKIV 141

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM--FGSPETTTGGN 221
           E    +   G+ AR MS  ++KLT       C + FINQ+R KIG     G+P TT+GG 
Sbjct: 142 ESSAEQQTMGLLARFMSTTMQKLTGIAYEHDCTVGFINQIREKIGGFSPAGTPTTTSGGR 201

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE 281
           AL FY+S R+ ++    IKD + I G+  ++KVVKNK+A PFK+  F ++YG G+    E
Sbjct: 202 ALPFYASQRIQVKMGEYIKDGNDIIGHWVKIKVVKNKIAIPFKEAAFPLIYGHGVDRIDE 261

Query: 282 LIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI------------FLRENIEIAENIES 329
           +  + + A  V K+G W     +  G+ R++  I            FL E+ ++A  +E+
Sbjct: 262 VAQVAILAGFVQKNGGWCRIIDEETGEIRQHKGIELKFNGQAKLVAFLHEHKDLAAELEA 321

Query: 330 LLR 332
            +R
Sbjct: 322 KIR 324


>gi|296040844|gb|ADG85389.1| recombination protein A [Yersinia massiliensis]
          Length = 139

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 102/138 (73%), Positives = 119/138 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 2   ISTGSLPLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++
Sbjct: 62  DPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI 121

Query: 168 GESLPGMQARLMSQALRK 185
           G+S  G+ AR+MSQA+RK
Sbjct: 122 GDSHMGLAARMMSQAMRK 139


>gi|90855324|emb|CAI99182.1| recombinase A [Lactobacillus ingluviei]
          Length = 150

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 97/149 (65%), Positives = 129/149 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +  VSSGSL +D ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ Q+ GGT A++DAE
Sbjct: 2   VATVSSGSLAIDEALGVGGYPRGRIIEMYGPESSGKTTVALHAVAEVQQQGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA+ LGVD+ NLL+SQPDTGEQ L+I D L+ SGA+DI+V+DSVAAL PRAEIE
Sbjct: 62  NAMDPEYAKALGVDIDNLLLSQPDTGEQGLQIADALISSGAIDIVVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193
           G+MG++  G+QARLMSQALRKL+ +I+++
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTINKT 150


>gi|293629586|gb|ADE58560.1| recombinase A [Agrobacterium tumefaciens]
          Length = 124

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 103/121 (85%), Positives = 112/121 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 4   VETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+ LLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE
Sbjct: 64  HALDPVYARKLGVDLQGLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 123

Query: 165 G 165
           G
Sbjct: 124 G 124


>gi|180050825|gb|ACB87026.1| RecA [Bacteriovorax sp. PR]
          Length = 145

 Score =  213 bits (542), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 101/146 (69%), Positives = 124/146 (84%), Gaps = 1/146 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+L S+  + E +  +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ 
Sbjct: 1   IMKLDSEKKL-EKVPAISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAEC 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRSGAVD++++
Sbjct: 60  QKAGGTVAFIDAEHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSGAVDLLIV 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQAR 177
           DSVAALTPRAE+EGDMG+S  G+QAR
Sbjct: 120 DSVAALTPRAELEGDMGDSHMGLQAR 145


>gi|88705860|ref|ZP_01103569.1| RecA bacterial DNA recombination protein [Congregibacter litoralis
           KT71]
 gi|88699931|gb|EAQ97041.1| RecA bacterial DNA recombination protein [Congregibacter litoralis
           KT71]
          Length = 181

 Score =  213 bits (542), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 94/150 (62%), Positives = 124/150 (82%)

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           +RKLT++I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++K+ 
Sbjct: 1   MRKLTATIKQTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKEG 60

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           D + GN+TRVKVVKNK+A PFKQ EF IMYG GI    E+ID GVK +++DKSGAW+++K
Sbjct: 61  DEVVGNETRVKVVKNKVAPPFKQAEFQIMYGRGIYRTAEVIDWGVKLNLIDKSGAWYAYK 120

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLR 332
           G ++GQG+ N+  FL +N  +   IE L+R
Sbjct: 121 GDKIGQGKANAAKFLEDNPALGSEIEGLIR 150


>gi|78271397|emb|CAJ20015.1| recombinase [Erwinia amylovora]
 gi|84618143|emb|CAJ20045.1| recombinase A [Erwinia pyrifoliae]
 gi|84618149|emb|CAJ20047.1| recombinase A [Erwinia tasmaniensis Et1/99]
 gi|119658651|emb|CAL22717.1| DNA recombinase A [Erwinia tasmaniensis]
 gi|221360422|emb|CAR92468.1| recombinase A [Erwinia pyrifoliae]
 gi|221360424|emb|CAR92469.1| recombinase A [Erwinia pyrifoliae]
 gi|221360426|emb|CAR92470.1| recombinase A [Erwinia pyrifoliae]
          Length = 133

 Score =  213 bits (541), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 97/133 (72%), Positives = 118/133 (88%)

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           CAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAAL
Sbjct: 1   CAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAAL 60

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
           TP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETT
Sbjct: 61  TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNSGTLLIFINQIRMKIGVMFGNPETT 120

Query: 218 TGGNALKFYSSVR 230
           TGGNALKFY+SVR
Sbjct: 121 TGGNALKFYASVR 133


>gi|226495001|ref|NP_001143776.1| hypothetical protein LOC100276540 [Zea mays]
 gi|194699132|gb|ACF83650.1| unknown [Zea mays]
 gi|195626822|gb|ACG35241.1| hypothetical protein [Zea mays]
          Length = 409

 Score =  213 bits (541), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 131/330 (39%), Positives = 206/330 (62%), Gaps = 11/330 (3%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           ++K  +L  A+SQ+   + + + + L  + S      VVS+GSL LD+ALG+GG PKGR+
Sbjct: 80  IEKESSLNVAVSQLAIDFDRDSNLCL-ERFSRARKASVVSTGSLKLDLALGVGGLPKGRM 138

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYG E+SGKTTLALH I ++QK GG CA++DAE+A +  +A  +GVD + LLI+QPD+
Sbjct: 139 VEIYGKEASGKTTLALHVIKEAQKNGGYCAYIDAENAFNPSFAESIGVDSERLLIAQPDS 198

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
            E +L I + LV   +V ++V+DSVAAL P+ EIEG++  +   +Q+ LM++ALRK+  +
Sbjct: 199 AENSLSIVNTLVGG-SVAVVVVDSVAALIPKCEIEGEIYTNCGDIQSHLMTRALRKIQYT 257

Query: 190 ISRSKCILVFINQMRMKIGVMFGSP----ETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           + RS+ +++F+NQ+R K      +P    E   GGNAL FY++VR+   R      +D  
Sbjct: 258 LCRSETLIIFVNQVRTK--RTSSNPGIYKEVPCGGNALGFYAAVRMRTSRRELRYSEDEA 315

Query: 246 TGNQTRVKVVKNKMASPF--KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
           TG    V+++KNK+A     K+   DI +G+GI    E+++      ++ K G  +    
Sbjct: 316 TGVGISVQIIKNKLAPANLKKEAGIDITFGKGICHESEILETASSVGVILKDGCGYWINN 375

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           + L  G+  ++ FLREN  +A+ I + +R 
Sbjct: 376 EFLA-GKVEAEKFLRENAAVADEICNTVRN 404


>gi|242059871|ref|XP_002459081.1| hypothetical protein SORBIDRAFT_03g045520 [Sorghum bicolor]
 gi|241931056|gb|EES04201.1| hypothetical protein SORBIDRAFT_03g045520 [Sorghum bicolor]
          Length = 760

 Score =  213 bits (541), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 132/327 (40%), Positives = 206/327 (62%), Gaps = 13/327 (3%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           ++K  +L  A+SQ+   + + + + L  + S      VVS+GSL LD+ALG+GG PKGR+
Sbjct: 82  IEKESSLNIAVSQLASDFDRESNLCL-ERFSRTRKASVVSTGSLKLDLALGVGGLPKGRM 140

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYG E+SGKTTLALH + ++QK GG CA++DAE+A +  +A  +GVD + LLI+QPD+
Sbjct: 141 VEIYGKEASGKTTLALHVVKEAQKNGGYCAYIDAENAFNPSFAEAIGVDSERLLIAQPDS 200

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
            E +L I + LV   +V ++V+DSVAAL P+ EIEG++  +   +Q+RLM++ALRK+  +
Sbjct: 201 AENSLSIVNSLVGG-SVAVVVVDSVAALIPKCEIEGEIYTNSEDIQSRLMTRALRKIQYT 259

Query: 190 ISRSKCILVFINQMRMK------IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           + RS+ +++F+NQ+R K       G+     E   GGNAL FYS+VR+   R      +D
Sbjct: 260 LCRSETLIIFVNQVRTKRTSKNFPGIY---KEVPCGGNALGFYSAVRMRTSRRELRYSED 316

Query: 244 SITGNQTRVKVVKNKMA-SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
             TG    V+++KNK+A +  K+   DI +G+GI    E++++     ++ K G  +   
Sbjct: 317 EATGIGISVQIIKNKLAPASLKEAGIDIRFGKGICHESEILEVASSVGVILKDGCGYWIN 376

Query: 303 GQRLGQGRENSKIFLRENIEIAENIES 329
              L  G+  ++ FLREN  +A+ I S
Sbjct: 377 NVFL-TGKLEAEKFLRENAAVADEICS 402


>gi|180050859|gb|ACB87043.1| RecA [Bacteriovorax sp. JS10]
          Length = 146

 Score =  212 bits (540), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 103/147 (70%), Positives = 124/147 (84%), Gaps = 1/147 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           AIM+L S+    + I  +S+  LGLD+ALG+GG PKGRI+EIYGPESSGKTTL LH  A+
Sbjct: 1   AIMKLDSEEK-ADKIPAISTSCLGLDLALGVGGVPKGRIIEIYGPESSGKTTLTLHIAAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+GEQALEITDMLVRSGAVD+++
Sbjct: 60  CQKAGGTVAFIDAEHALDTAYASKLGVDIPNTLISQPDSGEQALEITDMLVRSGAVDLLI 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQAR 177
           +DSVAALTPRAE+EGDMG+S  G+QA+
Sbjct: 120 VDSVAALTPRAELEGDMGDSHMGLQAK 146


>gi|180050891|gb|ACB87059.1| RecA [Bacteriovorax sp. NZ8]
          Length = 146

 Score =  212 bits (540), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 101/147 (68%), Positives = 124/147 (84%), Gaps = 1/147 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           AIM+L S+  + E +  +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+
Sbjct: 1   AIMKLDSEKKL-EKVPSISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD+++
Sbjct: 60  CQKAGGTVAFIDAEHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLI 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQAR 177
           +DSVAALTPRAE+EGDMG+S  G+QAR
Sbjct: 120 VDSVAALTPRAELEGDMGDSHMGLQAR 146


>gi|213012502|gb|ACJ38817.1| recombination-repair protein [Vibrio sp. R-680]
          Length = 139

 Score =  212 bits (539), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 96/139 (69%), Positives = 121/139 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPE 215
            +FINQ+RMKIGVMFG+PE
Sbjct: 121 CIFINQIRMKIGVMFGNPE 139


>gi|226328746|ref|ZP_03804264.1| hypothetical protein PROPEN_02646 [Proteus penneri ATCC 35198]
 gi|225201932|gb|EEG84286.1| hypothetical protein PROPEN_02646 [Proteus penneri ATCC 35198]
          Length = 182

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 103/154 (66%), Positives = 126/154 (81%), Gaps = 2/154 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P+GRIV
Sbjct: 22  NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--NVETISTGSLSLDVALGAGGLPRGRIV 79

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G  CAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 80  EIYGPESSGKTTLTLQVIAAAQREGKICAFIDAEHALDPIYAQKLGVDIDNLLCSQPDTG 139

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           EQALEI D L RSGAVD+IV+DSVAALTP+ +++
Sbjct: 140 EQALEICDALSRSGAVDVIVVDSVAALTPKQKLK 173


>gi|330684955|gb|EGG96633.1| RecA protein [Staphylococcus epidermidis VCU121]
          Length = 181

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 98/161 (60%), Positives = 127/161 (78%)

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           RLMSQALRKL+ +IS+S    +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR 
Sbjct: 1   RLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRA 60

Query: 237 GSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
             +K    I GN+T++KVVKNK+A PF+  E DIMYG+GIS  GELIDLGV+  IVDKSG
Sbjct: 61  EQLKQGQEIVGNRTKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENEIVDKSG 120

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           AW+S+ G+R+GQG+EN K +L+EN +I + I+  LR+  G+
Sbjct: 121 AWYSYNGERMGQGKENVKTYLKENPQIKDEIDQKLREKLGI 161


>gi|290466600|gb|ADD25477.1| RecA [Xenorhabdus szentirmaii]
          Length = 140

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 99/140 (70%), Positives = 118/140 (84%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL 
Sbjct: 1   PMGRIVEIYGPESSGKTTLTLQVIAAAQREGRTCAFIDAEHALDPIYAKKLGVDIDNLLC 60

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEGD+G+S  G+ AR+MSQA+R
Sbjct: 61  SQPDTGEQALEICDALSRSGAVDVIIVDSVAALTPKAEIEGDIGDSHMGLAARMMSQAMR 120

Query: 185 KLTSSISRSKCILVFINQMR 204
           KL  ++  S  +L+FINQ+R
Sbjct: 121 KLAGNLKNSNTLLIFINQIR 140


>gi|117549984|gb|ABK35096.1| homologous recombination factor [Acinetobacter baumannii]
          Length = 126

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 97/126 (76%), Positives = 114/126 (90%)

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK+GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLVRSGA+D+IV
Sbjct: 1   CQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIV 60

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FINQ+RMKIGVM
Sbjct: 61  VDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVM 120

Query: 211 FGSPET 216
           FGSPET
Sbjct: 121 FGSPET 126


>gi|180050899|gb|ACB87063.1| RecA [Bacteriovorax sp. NZAH13]
          Length = 145

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 100/146 (68%), Positives = 123/146 (84%), Gaps = 1/146 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+L S+  + E +  +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ 
Sbjct: 1   IMKLDSEKKL-EKVPSISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAEC 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++
Sbjct: 60  QKAGGTVAFIDAEHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIV 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQAR 177
           DSVAALTPRAE+EGDMG+S  G+QAR
Sbjct: 120 DSVAALTPRAELEGDMGDSHMGLQAR 145


>gi|290466556|gb|ADD25455.1| RecA [Xenorhabdus bovienii]
 gi|290466572|gb|ADD25463.1| RecA [Xenorhabdus bovienii]
 gi|290466574|gb|ADD25464.1| RecA [Xenorhabdus bovienii]
 gi|290466576|gb|ADD25465.1| RecA [Xenorhabdus bovienii]
 gi|290466582|gb|ADD25468.1| RecA [Xenorhabdus bovienii]
 gi|290466584|gb|ADD25469.1| RecA [Xenorhabdus bovienii]
 gi|290466588|gb|ADD25471.1| RecA [Xenorhabdus bovienii]
 gi|290466594|gb|ADD25474.1| RecA [Xenorhabdus bovienii]
 gi|290466596|gb|ADD25475.1| RecA [Xenorhabdus bovienii]
 gi|290466598|gb|ADD25476.1| RecA [Xenorhabdus bovienii]
 gi|290466612|gb|ADD25483.1| RecA [Xenorhabdus bovienii]
          Length = 140

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 98/140 (70%), Positives = 118/140 (84%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL 
Sbjct: 1   PMGRIVEIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHALDPVYAKKLGVDIDNLLC 60

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+R
Sbjct: 61  SQPDTGEQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMR 120

Query: 185 KLTSSISRSKCILVFINQMR 204
           KL  ++  S  +L+FINQ+R
Sbjct: 121 KLAGNLKNSNTLLIFINQIR 140


>gi|290466554|gb|ADD25454.1| RecA [Xenorhabdus indica]
 gi|290466562|gb|ADD25458.1| RecA [Xenorhabdus budapestensis]
 gi|290466592|gb|ADD25473.1| RecA [Xenorhabdus hominickii]
 gi|290466602|gb|ADD25478.1| RecA [Xenorhabdus cabanillasii]
 gi|290466606|gb|ADD25480.1| RecA [Xenorhabdus innexi]
 gi|290466608|gb|ADD25481.1| RecA [Xenorhabdus stockiae]
          Length = 140

 Score =  209 bits (533), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 98/140 (70%), Positives = 118/140 (84%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL 
Sbjct: 1   PMGRIVEIYGPESSGKTTLTLQVIAAAQREGRTCAFIDAEHALDPVYAKKLGVDIDNLLC 60

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+R
Sbjct: 61  SQPDTGEQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMR 120

Query: 185 KLTSSISRSKCILVFINQMR 204
           KL  ++  S  +L+FINQ+R
Sbjct: 121 KLAGNLKNSNTLLIFINQIR 140


>gi|180050887|gb|ACB87057.1| RecA [Bacteriovorax sp. NZ9]
          Length = 146

 Score =  209 bits (532), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 100/147 (68%), Positives = 122/147 (82%), Gaps = 1/147 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           AIM+L S+  + E +  +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+
Sbjct: 1   AIMKLDSEKKL-EKVPSISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD+++
Sbjct: 60  CQKAGGTVAFIDAEHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLI 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQAR 177
           +DSVAALTPRAE+EGDMG+S  G Q R
Sbjct: 120 VDSVAALTPRAELEGDMGDSHMGSQPR 146


>gi|119658649|emb|CAL22716.1| DNA recombinase A [Erwinia tasmaniensis]
          Length = 133

 Score =  209 bits (531), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 96/133 (72%), Positives = 117/133 (87%)

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           CAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAAL
Sbjct: 1   CAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEIRDALARSGAVDVIIVDSVAAL 60

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
           TP+AEIEG++G+S  G+ A +MSQA+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETT
Sbjct: 61  TPKAEIEGEIGDSHMGLAACMMSQAMRKLAGNLKNSGTLLIFINQIRMKIGVMFGNPETT 120

Query: 218 TGGNALKFYSSVR 230
           TGGNALKFY+SVR
Sbjct: 121 TGGNALKFYASVR 133


>gi|213012408|gb|ACJ38770.1| recombination-repair protein [Vibrio sp. R-619]
          Length = 136

 Score =  209 bits (531), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 95/136 (69%), Positives = 118/136 (86%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLECIAAAQKAGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFG 212
            +FINQ+RMKIGVMFG
Sbjct: 121 CIFINQIRMKIGVMFG 136


>gi|290466558|gb|ADD25456.1| RecA [Xenorhabdus nematophila]
 gi|290466560|gb|ADD25457.1| RecA [Xenorhabdus kozodoii]
 gi|290466564|gb|ADD25459.1| RecA [Xenorhabdus kozodoii]
 gi|290466566|gb|ADD25460.1| RecA [Xenorhabdus nematophila]
 gi|290466568|gb|ADD25461.1| RecA [Xenorhabdus sp. CR9]
 gi|290466570|gb|ADD25462.1| RecA [Xenorhabdus doucetiae]
 gi|290466578|gb|ADD25466.1| RecA [Xenorhabdus poinarii]
 gi|290466580|gb|ADD25467.1| RecA [Xenorhabdus griffiniae]
 gi|290466586|gb|ADD25470.1| RecA [Xenorhabdus sp. R00I-293]
 gi|290466590|gb|ADD25472.1| RecA [Xenorhabdus beddingii]
 gi|290466604|gb|ADD25479.1| RecA [Xenorhabdus vietnamensis]
 gi|290466610|gb|ADD25482.1| RecA [Xenorhabdus nematophila]
          Length = 140

 Score =  209 bits (531), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 97/140 (69%), Positives = 118/140 (84%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL 
Sbjct: 1   PMGRIVEIYGPESSGKTTLTLQVIAAAQREGRTCAFIDAEHALDPVYAKKLGVDIDNLLC 60

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+R
Sbjct: 61  SQPDTGEQALEICDALSRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMR 120

Query: 185 KLTSSISRSKCILVFINQMR 204
           KL  ++  S  +L+FINQ+R
Sbjct: 121 KLAGNLKNSNTLLIFINQIR 140


>gi|321399588|emb|CBJ49368.1| recombinase A [Marichromatium fluminis]
          Length = 125

 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 97/123 (78%), Positives = 112/123 (91%)

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AFVDAEHALD +YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVDI+VIDSVAALT
Sbjct: 2   AFVDAEHALDPVYAEKLGVNMNDLLVSQPDTGEQALEITDMLVRSNAVDIVVIDSVAALT 61

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           P+AEIEG+MG+S  G+QARLMSQALRKLT++I RS C ++FINQ+RMKIGVMFGSPE T 
Sbjct: 62  PKAEIEGEMGDSHVGLQARLMSQALRKLTANIKRSNCCVIFINQIRMKIGVMFGSPEATP 121

Query: 219 GGN 221
           GGN
Sbjct: 122 GGN 124


>gi|195542122|gb|ACF98275.1| recombinase protein A [Rhizobium alkalisoli]
          Length = 116

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 100/116 (86%), Positives = 108/116 (93%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD 
Sbjct: 1   TGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRA IEG
Sbjct: 61  VYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAAIEG 116


>gi|180050833|gb|ACB87030.1| RecA [Bacteriovorax sp. GSL4D]
          Length = 143

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 99/144 (68%), Positives = 121/144 (84%), Gaps = 1/144 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           AIM+L S+  + E I  +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+
Sbjct: 1   AIMKLDSEKKL-EKIPAISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD+++
Sbjct: 60  CQKAGGTVAFIDAEHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLI 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGM 174
           +DSVAALTPRAE+EGDMG+S  G+
Sbjct: 120 VDSVAALTPRAELEGDMGDSHMGL 143


>gi|300813945|ref|ZP_07094247.1| RecA protein [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511944|gb|EFK39142.1| RecA protein [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 201

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 106/183 (57%), Positives = 143/183 (78%)

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+ EI+G+MG++  G+QARLMSQALRKLT +I++SK  ++FINQ+R K+GV
Sbjct: 1   VIDSVAALVPKTEIDGEMGQATIGLQARLMSQALRKLTGAINKSKAAVIFINQLREKVGV 60

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           ++G+PETTTGG ALKFYS++RLD+RR+  IK  DS  G++ RVKVVKNK+A PFK+ E D
Sbjct: 61  IYGNPETTTGGRALKFYSTIRLDVRRIEIIKKGDSPIGSRVRVKVVKNKVAPPFKEAEVD 120

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           IMYG GIS  G ++D+     IV K+G+W+S+  ++LGQGRE SK FL  N  + + IE+
Sbjct: 121 IMYGTGISKTGNILDVAADMGIVKKAGSWYSYNDEKLGQGREKSKDFLDSNPNLLKEIEN 180

Query: 330 LLR 332
            +R
Sbjct: 181 KVR 183


>gi|180050847|gb|ACB87037.1| RecA [Bacteriovorax sp. PS21S]
          Length = 135

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 98/124 (79%), Positives = 111/124 (89%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           V+S+G LGLD+ALG+GG PKGRI+EIYGPESSGKTTL LH  AQ QK GGT AFVDAEHA
Sbjct: 4   VISTGCLGLDLALGVGGIPKGRIIEIYGPESSGKTTLTLHIAAQCQKQGGTVAFVDAEHA 63

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD+ YA KLGVD+ N LISQPD+GEQALEITDMLVRSGAVD +++DSVAALTPRAE+EGD
Sbjct: 64  LDTTYAGKLGVDIPNTLISQPDSGEQALEITDMLVRSGAVDFLIVDSVAALTPRAELEGD 123

Query: 167 MGES 170
           MG+S
Sbjct: 124 MGDS 127


>gi|33087791|gb|AAP93026.1| recombination protein A [Yersinia bercovieri]
          Length = 142

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 101/144 (70%), Positives = 119/144 (82%), Gaps = 2/144 (1%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           L QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSG
Sbjct: 1   LGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 58

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D 
Sbjct: 59  KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDA 118

Query: 140 LVRSGAVDIIVIDSVAALTPRAEI 163
           L RSGAVD+I++DSVAALTP+AEI
Sbjct: 119 LTRSGAVDVIIVDSVAALTPKAEI 142


>gi|27358008|gb|AAN86820.1| RecA [Burkholderia cf. cepacia]
          Length = 153

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 103/143 (72%), Positives = 122/143 (85%), Gaps = 1/143 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPES
Sbjct: 1   AALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPES 59

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEIT
Sbjct: 60  SGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEIT 119

Query: 138 DMLVRSGAVDIIVIDSVAALTPR 160
           D LVRSG++D+IVIDSVAAL PR
Sbjct: 120 DALVRSGSIDMIVIDSVAALVPR 142


>gi|195542120|gb|ACF98274.1| recombinase protein A [Rhizobium alkalisoli]
          Length = 116

 Score =  206 bits (524), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 99/116 (85%), Positives = 108/116 (93%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHA D 
Sbjct: 1   TGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAHDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAE+EG
Sbjct: 61  VYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEMEG 116


>gi|6694837|gb|AAF25422.1|AF214775_1 RecA protein [Arthrobacter sp. 'SMCC ZAT200']
          Length = 155

 Score =  206 bits (524), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 102/152 (67%), Positives = 124/152 (81%), Gaps = 1/152 (0%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F+DA   LD  YA KLGVD   LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL P
Sbjct: 4   FIDARR-LDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVP 62

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           RAEIEGDMG+S  G+QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTG
Sbjct: 63  RAEIEGDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTG 122

Query: 220 GNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           G ALKFY+SVR+D+RR+ ++K+     GN+T+
Sbjct: 123 GKALKFYASVRIDVRRIQTLKEGADSVGNRTK 154


>gi|180050819|gb|ACB87023.1| RecA [Bacteriovorax sp. ORF]
          Length = 142

 Score =  205 bits (522), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 94/133 (70%), Positives = 114/133 (85%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E +  +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ QK GGT AF+
Sbjct: 10  LEKVPAISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFI 69

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           DAEHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRSGAVD++++DSVAALTPRA
Sbjct: 70  DAEHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSGAVDLLIVDSVAALTPRA 129

Query: 162 EIEGDMGESLPGM 174
           E+EGDMG+S  G+
Sbjct: 130 ELEGDMGDSHMGL 142


>gi|180050885|gb|ACB87056.1| RecA [Bacteriovorax sp. JDF]
          Length = 142

 Score =  205 bits (522), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 97/140 (69%), Positives = 119/140 (85%), Gaps = 1/140 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           AIM+L S+  + E +  +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+
Sbjct: 1   AIMKLDSEKKL-EKVPSISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD+++
Sbjct: 60  CQKAGGTVAFIDAEHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLI 119

Query: 151 IDSVAALTPRAEIEGDMGES 170
           +DSVAALTPRAE+EGDMG+S
Sbjct: 120 VDSVAALTPRAELEGDMGDS 139


>gi|290750596|gb|ADD52187.1| recombinase A [Rickettsia massiliae]
          Length = 129

 Score =  205 bits (521), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 96/128 (75%), Positives = 116/128 (90%)

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
           KLGV++  L+ISQPDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++   
Sbjct: 1   KLGVNIDELIISQPDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMA 60

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
            QARLMSQALRKLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DI
Sbjct: 61  SQARLMSQALRKLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDI 120

Query: 234 RRVGSIKD 241
           RR+GSIK+
Sbjct: 121 RRIGSIKE 128


>gi|213012346|gb|ACJ38739.1| recombination-repair protein [Vibrio harveyi]
          Length = 132

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 93/132 (70%), Positives = 118/132 (89%)

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D L RSGA+D +V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT +
Sbjct: 1   GEQALEICDALARSGAIDFMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGN 60

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           + +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+
Sbjct: 61  LKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE 120

Query: 250 TRVKVVKNKMAS 261
           TR+KVVKNK+A+
Sbjct: 121 TRIKVVKNKIAA 132


>gi|180050897|gb|ACB87062.1| RecA [Bacteriovorax sp. NZAH11]
          Length = 145

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 99/145 (68%), Positives = 121/145 (83%), Gaps = 4/145 (2%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+L S+  + E +  +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ 
Sbjct: 1   IMKLDSEKKL-EKVPSISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAEC 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++
Sbjct: 60  QKAGGTVAFIDAEHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIV 119

Query: 152 DSVAALTPRAEIEGDMGES---LPG 173
           DSVAALTPRAE+EGDMG+S   LPG
Sbjct: 120 DSVAALTPRAELEGDMGDSHMGLPG 144


>gi|213012330|gb|ACJ38731.1| recombination-repair protein [Vibrio alginolyticus]
          Length = 142

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 94/142 (66%), Positives = 120/142 (84%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTITLELIAAAQRQGKTCAFIDAEHALDPVYAKKLGVEIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V    AALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVSTLSAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTT 218
            +FINQ+RMKIGVMFG+PETTT
Sbjct: 121 CIFINQIRMKIGVMFGNPETTT 142


>gi|288269487|dbj|BAI68120.1| recombinase A [Lactobacillus sp. NGRI 0130Q]
          Length = 138

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 95/138 (68%), Positives = 120/138 (86%)

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGEQ
Sbjct: 1   YGPESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQ 60

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
            L+ITD LV SGA+DI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +IS+
Sbjct: 61  GLQITDALVTSGAIDIVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISK 120

Query: 193 SKCILVFINQMRMKIGVM 210
           +K I +FINQ+R K+GVM
Sbjct: 121 TKTIAIFINQIREKVGVM 138


>gi|9965213|gb|AAG09992.1| RecA [Acinetobacter sp. 10095(LUH 1469)]
          Length = 127

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 95/127 (74%), Positives = 112/127 (88%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ L  IAQ QKTGGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLV
Sbjct: 1   TMTLQAIAQCQKTGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN
Sbjct: 61  RSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120

Query: 202 QMRMKIG 208
           Q+RMKIG
Sbjct: 121 QIRMKIG 127


>gi|6224832|gb|AAF05971.1| RecA protein [Acinetobacter haemolyticus]
          Length = 127

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 95/127 (74%), Positives = 112/127 (88%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ L  IAQ QKTGGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLV
Sbjct: 1   TMTLQAIAQCQKTGGTCAFIDAEHALDPEYARKLGVDIDNLLVSQPDNGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN
Sbjct: 61  RSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120

Query: 202 QMRMKIG 208
           Q+RMKIG
Sbjct: 121 QIRMKIG 127


>gi|9965219|gb|AAG09995.1| RecA [Acinetobacter radioresistens]
          Length = 127

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 95/127 (74%), Positives = 111/127 (87%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ L  IAQ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLV
Sbjct: 1   TMTLQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D+IV+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN
Sbjct: 61  RSGAIDLIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120

Query: 202 QMRMKIG 208
           Q+RMKIG
Sbjct: 121 QIRMKIG 127


>gi|124484363|dbj|BAF46292.1| DNA recombination protein RecA, chloroplast [Chlamydomonas
           reinhardtii]
          Length = 309

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 101/183 (55%), Positives = 133/183 (72%), Gaps = 3/183 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K+K     + +I R +G G+IM+L    S+   IE   SGSL LD ALG GG+P+GRI+E
Sbjct: 62  KAKLFNETVDRITRRFGDGSIMRLSD--SVTANIETFPSGSLTLDAALG-GGYPRGRIIE 118

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPE+SGKTTLA+H  A+ Q+ GGT A++D EHA D  YA +LG++L N   +QP TGE
Sbjct: 119 VYGPEASGKTTLAMHACAEIQRLGGTVAYIDVEHAFDRTYAERLGINLNNFWYAQPMTGE 178

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           +ALE+ D L RS   D++VIDSVAAL PRAE+EGD+G    G QARL+SQALRKL++S S
Sbjct: 179 EALEVMDELCRSNVCDLVVIDSVAALVPRAELEGDIGSVQIGSQARLLSQALRKLSASAS 238

Query: 192 RSK 194
           +S+
Sbjct: 239 KSR 241


>gi|180050893|gb|ACB87060.1| RecA [Bacteriovorax sp. NZAH14]
          Length = 144

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 96/139 (69%), Positives = 118/139 (84%), Gaps = 1/139 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+L S+  + E +  +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ 
Sbjct: 1   IMKLDSEKKL-EKVPSISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAEC 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++
Sbjct: 60  QKAGGTVAFIDAEHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIV 119

Query: 152 DSVAALTPRAEIEGDMGES 170
           DSVAALTPRAE+EGDMG+S
Sbjct: 120 DSVAALTPRAELEGDMGDS 138


>gi|196968131|gb|ACG80639.1| recombinase A [Chlamydophila pecorum]
 gi|196968133|gb|ACG80640.1| recombinase A [Chlamydophila pecorum]
 gi|196968135|gb|ACG80641.1| recombinase A [Chlamydophila pecorum]
 gi|196968137|gb|ACG80642.1| recombinase A [Chlamydophila pecorum]
 gi|196968139|gb|ACG80643.1| recombinase A [Chlamydophila pecorum]
 gi|196968141|gb|ACG80644.1| recombinase A [Chlamydophila pecorum]
 gi|196968143|gb|ACG80645.1| recombinase A [Chlamydophila pecorum]
 gi|196968145|gb|ACG80646.1| recombinase A [Chlamydophila pecorum]
 gi|196968147|gb|ACG80647.1| recombinase A [Chlamydophila pecorum]
 gi|196968149|gb|ACG80648.1| recombinase A [Chlamydophila pecorum]
 gi|196968151|gb|ACG80649.1| recombinase A [Chlamydophila pecorum]
 gi|196968153|gb|ACG80650.1| recombinase A [Chlamydophila pecorum]
 gi|196968155|gb|ACG80651.1| recombinase A [Chlamydophila pecorum]
 gi|196968157|gb|ACG80652.1| recombinase A [Chlamydophila pecorum]
 gi|196968159|gb|ACG80653.1| recombinase A [Chlamydophila pecorum]
 gi|196968161|gb|ACG80654.1| recombinase A [Chlamydophila pecorum]
 gi|196968163|gb|ACG80655.1| recombinase A [Chlamydophila pecorum]
 gi|196968165|gb|ACG80656.1| recombinase A [Chlamydophila pecorum]
          Length = 153

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/152 (65%), Positives = 126/152 (82%), Gaps = 1/152 (0%)

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD  YA  +GV++ +L+ISQPD GE AL I ++L RSGAVD++VIDSVAAL P++E+
Sbjct: 1   EHALDPSYAALIGVNVDDLMISQPDCGEDALSIAELLARSGAVDVLVIDSVAALVPKSEL 60

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EGD+G+   G+QAR+MSQALRKLTS+++RS+   +FINQ+R KIGV FG+PETTTGG AL
Sbjct: 61  EGDIGDVHVGLQARMMSQALRKLTSTLARSQTCAIFINQIREKIGVSFGNPETTTGGRAL 120

Query: 224 KFYSSVRLDIRRVGSIKDKDSI-TGNQTRVKV 254
           KFYSS+RLDIRR+GSIK  DS   GN+ +VKV
Sbjct: 121 KFYSSIRLDIRRIGSIKSNDSSDIGNRIKVKV 152


>gi|6224836|gb|AAF05973.1| RecA protein [Acinetobacter genomosp. 6]
          Length = 127

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 95/127 (74%), Positives = 111/127 (87%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ L  IAQ QKTGGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLV
Sbjct: 1   TMTLQAIAQCQKTGGTCAFIDAEHALDPEYARKLGVDIDNLLVSQPDNGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN
Sbjct: 61  RSGAIDMIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120

Query: 202 QMRMKIG 208
           Q RMKIG
Sbjct: 121 QXRMKIG 127


>gi|7524579|gb|AAF05978.2| RecA protein [Acinetobacter guillouiae]
          Length = 127

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 95/127 (74%), Positives = 111/127 (87%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ L  IAQ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLV
Sbjct: 1   TMTLQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN
Sbjct: 61  RSGAVDMIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120

Query: 202 QMRMKIG 208
           Q+RMKIG
Sbjct: 121 QIRMKIG 127


>gi|6224828|gb|AAF05969.1| RecA protein [Acinetobacter baumannii]
 gi|6224856|gb|AAF05983.1| RecA protein [Acinetobacter genomosp. 13TU]
 gi|9965211|gb|AAG09991.1| RecA [Acinetobacter baumannii]
 gi|9965217|gb|AAG09994.1| RecA [Acinetobacter sp. 5804(LUH 1471)]
          Length = 127

 Score =  203 bits (516), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 94/127 (74%), Positives = 112/127 (88%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ L  IAQ QK+GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLV
Sbjct: 1   TMTLQAIAQCQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN
Sbjct: 61  RSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120

Query: 202 QMRMKIG 208
           Q+RMKIG
Sbjct: 121 QIRMKIG 127


>gi|288269489|dbj|BAI68121.1| recombinase A [Lactobacillus parafarraginis]
          Length = 138

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 94/138 (68%), Positives = 119/138 (86%)

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGEQ
Sbjct: 1   YGPESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQ 60

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
            L+ITD LV SGA+DI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +IS+
Sbjct: 61  GLQITDALVTSGAIDIVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISK 120

Query: 193 SKCILVFINQMRMKIGVM 210
           +K I +FINQ+R K+G M
Sbjct: 121 TKTIAIFINQIREKVGAM 138


>gi|6224834|gb|AAF05972.1| RecA protein [Acinetobacter junii]
          Length = 127

 Score =  202 bits (515), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 94/127 (74%), Positives = 111/127 (87%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ L  IAQ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLV
Sbjct: 1   TMTLQAIAQCQKNGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN
Sbjct: 61  RSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120

Query: 202 QMRMKIG 208
           Q+RMKIG
Sbjct: 121 QIRMKIG 127


>gi|6224830|gb|AAF05970.1| RecA protein [Acinetobacter genomosp. 3 str. DSM 21653]
 gi|6224844|gb|AAF05977.1| RecA protein [Acinetobacter berezinae]
          Length = 127

 Score =  202 bits (515), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 94/127 (74%), Positives = 111/127 (87%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ L  IAQ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLV
Sbjct: 1   TMTLQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN
Sbjct: 61  RSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120

Query: 202 QMRMKIG 208
           Q+RMKIG
Sbjct: 121 QIRMKIG 127


>gi|9965223|gb|AAG09997.1| RecA [Acinetobacter sp. LUH1090]
          Length = 127

 Score =  202 bits (515), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 94/127 (74%), Positives = 111/127 (87%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ L  IA+ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLV
Sbjct: 1   TMTLQAIAECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D+IV+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN
Sbjct: 61  RSGAIDLIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120

Query: 202 QMRMKIG 208
           Q+RMKIG
Sbjct: 121 QIRMKIG 127


>gi|6224826|gb|AAF05968.1| RecA protein [Acinetobacter calcoaceticus]
 gi|9965209|gb|AAG09990.1| RecA [Acinetobacter calcoaceticus]
          Length = 127

 Score =  202 bits (515), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 94/127 (74%), Positives = 111/127 (87%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ L  IAQ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLV
Sbjct: 1   TMTLQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN
Sbjct: 61  RSGAIDMIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120

Query: 202 QMRMKIG 208
           Q+RMKIG
Sbjct: 121 QIRMKIG 127


>gi|6224838|gb|AAF05974.1| RecA protein [Acinetobacter johnsonii]
 gi|9965221|gb|AAG09996.1| RecA [Acinetobacter sp. RUH 2866]
          Length = 127

 Score =  202 bits (514), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 94/127 (74%), Positives = 111/127 (87%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ L  IA+ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLV
Sbjct: 1   TMTLQAIAECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D+IV+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN
Sbjct: 61  RSGAIDLIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120

Query: 202 QMRMKIG 208
           Q+RMKIG
Sbjct: 121 QIRMKIG 127


>gi|6224848|gb|AAF05979.1| RecA protein [Acinetobacter genomosp. 14TU]
 gi|6224850|gb|AAF05980.1| RecA protein [Acinetobacter genomosp. 15BJ]
 gi|6224852|gb|AAF05981.1| RecA protein [Acinetobacter genomosp. 16BJ]
 gi|6224854|gb|AAF05982.1| RecA protein [Acinetobacter genomosp. 17BJ]
 gi|9965215|gb|AAG09993.1| RecA [Acinetobacter sp. Bouvet382(K.Irino 105/85)]
          Length = 127

 Score =  202 bits (513), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 94/127 (74%), Positives = 111/127 (87%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ L  IAQ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLV
Sbjct: 1   TMTLQAIAQCQKNGGTCAFIDAEHALDPEYARKLGVDIDNLLVSQPDHGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN
Sbjct: 61  RSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120

Query: 202 QMRMKIG 208
           Q+RMKIG
Sbjct: 121 QIRMKIG 127


>gi|6224842|gb|AAF05976.1| RecA protein [Acinetobacter genomosp. 9]
 gi|9965225|gb|AAG09998.1| RecA [Acinetobacter sp. ATCC 17910]
          Length = 127

 Score =  202 bits (513), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 94/127 (74%), Positives = 111/127 (87%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ L  IA+ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLV
Sbjct: 1   TMTLQAIAECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D+IV+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN
Sbjct: 61  RSGAIDMIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120

Query: 202 QMRMKIG 208
           Q+RMKIG
Sbjct: 121 QIRMKIG 127


>gi|6224840|gb|AAF05975.1| RecA protein [Acinetobacter lwoffii]
          Length = 127

 Score =  202 bits (513), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 94/127 (74%), Positives = 111/127 (87%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ L  IA+ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLV
Sbjct: 1   TMXLQAIAECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D+IV+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN
Sbjct: 61  RSGAIDMIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120

Query: 202 QMRMKIG 208
           Q+RMKIG
Sbjct: 121 QIRMKIG 127


>gi|226428992|gb|ACO55116.1| recombinase A [Allochromatium vinosum]
          Length = 124

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 94/124 (75%), Positives = 111/124 (89%)

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           ++QK GGT AFVDAEHALD +YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVDI+
Sbjct: 1   EAQKLGGTAAFVDAEHALDPVYAEKLGVNMTDLLVSQPDTGEQALEITDMLVRSNAVDIV 60

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT +I RS C ++FINQ+RMKIGV
Sbjct: 61  VVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCCVIFINQIRMKIGV 120

Query: 210 MFGS 213
           MFG 
Sbjct: 121 MFGC 124


>gi|300603352|emb|CBN08581.1| recombinase A [Marichromatium sp. JA548]
          Length = 119

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 93/119 (78%), Positives = 110/119 (92%)

Query: 96  GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
           GT AFVDAEHALD +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVA
Sbjct: 1   GTAAFVDAEHALDPVYAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVA 60

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           ALTP+AEIEG+MG+S  G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMFGSP
Sbjct: 61  ALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSP 119


>gi|289496048|gb|ADC98064.1| recombination protein RecA [Vibrio sp. 7A04]
 gi|289496050|gb|ADC98065.1| recombination protein RecA [Aliivibrio logei]
 gi|289496052|gb|ADC98066.1| recombination protein RecA [Aliivibrio logei]
 gi|289496054|gb|ADC98067.1| recombination protein RecA [Vibrio sp. 7A12]
 gi|289496064|gb|ADC98072.1| recombination protein RecA [Aliivibrio logei]
 gi|289496066|gb|ADC98073.1| recombination protein RecA [Aliivibrio logei]
 gi|289496068|gb|ADC98074.1| recombination protein RecA [Aliivibrio logei]
 gi|289496070|gb|ADC98075.1| recombination protein RecA [Vibrio sp. 7C09]
 gi|289496072|gb|ADC98076.1| recombination protein RecA [Aliivibrio logei]
 gi|289496076|gb|ADC98078.1| recombination protein RecA [Aliivibrio logei]
 gi|289496078|gb|ADC98079.1| recombination protein RecA [Aliivibrio logei]
 gi|289496082|gb|ADC98081.1| recombination protein RecA [Aliivibrio logei]
 gi|289496084|gb|ADC98082.1| recombination protein RecA [Aliivibrio logei]
 gi|289496086|gb|ADC98083.1| recombination protein RecA [Vibrio sp. 7E03]
 gi|289496088|gb|ADC98084.1| recombination protein RecA [Vibrio sp. 7E04]
 gi|289496090|gb|ADC98085.1| recombination protein RecA [Aliivibrio logei]
 gi|289496092|gb|ADC98086.1| recombination protein RecA [Aliivibrio logei]
 gi|289496094|gb|ADC98087.1| recombination protein RecA [Vibrio sp. 7E11]
 gi|289496096|gb|ADC98088.1| recombination protein RecA [Aliivibrio logei]
 gi|289496098|gb|ADC98089.1| recombination protein RecA [Aliivibrio logei]
 gi|289496100|gb|ADC98090.1| recombination protein RecA [Aliivibrio logei]
 gi|289496110|gb|ADC98095.1| recombination protein RecA [Vibrio sp. 7H01]
 gi|289496112|gb|ADC98096.1| recombination protein RecA [Aliivibrio logei]
          Length = 131

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 93/131 (70%), Positives = 113/131 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IAQ+QK G TCAF+DAEHALD IYA+KLGVD+  LL SQPDTGEQALEI D L R
Sbjct: 1   LTLEAIAQAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLCSQPDTGEQALEIVDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 61  SGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|321399590|emb|CBJ49369.1| recombinase A [Marichromatium sp. JA498]
          Length = 121

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 93/119 (78%), Positives = 110/119 (92%)

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AFVDAEHALD +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAALT
Sbjct: 2   AFVDAEHALDPVYAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAALT 61

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
           P+AEIEG+MG+S  G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMFGSPE T
Sbjct: 62  PKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSPEAT 120


>gi|180050831|gb|ACB87029.1| RecA [Bacteriovorax sp. GSL4A]
          Length = 141

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 91/123 (73%), Positives = 109/123 (88%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ QK GGT AF+DAEHAL
Sbjct: 16  ISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEHAL 75

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++DSVAALTPRAE+EGDM
Sbjct: 76  DTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIVDSVAALTPRAELEGDM 135

Query: 168 GES 170
           G+S
Sbjct: 136 GDS 138


>gi|73918594|gb|AAZ93925.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918596|gb|AAZ93926.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918598|gb|AAZ93927.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918600|gb|AAZ93928.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918602|gb|AAZ93929.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918604|gb|AAZ93930.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918606|gb|AAZ93931.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918608|gb|AAZ93932.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918610|gb|AAZ93933.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918612|gb|AAZ93934.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918614|gb|AAZ93935.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918616|gb|AAZ93936.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918618|gb|AAZ93937.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918620|gb|AAZ93938.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918622|gb|AAZ93939.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918624|gb|AAZ93940.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918626|gb|AAZ93941.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918628|gb|AAZ93942.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918630|gb|AAZ93943.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918632|gb|AAZ93944.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918636|gb|AAZ93946.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918638|gb|AAZ93947.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918640|gb|AAZ93948.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918644|gb|AAZ93950.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918646|gb|AAZ93951.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918648|gb|AAZ93952.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918658|gb|AAZ93957.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918660|gb|AAZ93958.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918662|gb|AAZ93959.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918664|gb|AAZ93960.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918666|gb|AAZ93961.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918670|gb|AAZ93963.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918672|gb|AAZ93964.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918674|gb|AAZ93965.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918676|gb|AAZ93966.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918678|gb|AAZ93967.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918680|gb|AAZ93968.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918682|gb|AAZ93969.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918684|gb|AAZ93970.1| homologous recombination factor [Acinetobacter genomosp. 13TU]
 gi|73918686|gb|AAZ93971.1| homologous recombination factor [Acinetobacter genomosp. 13TU]
 gi|73918688|gb|AAZ93972.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918690|gb|AAZ93973.1| homologous recombination factor [Acinetobacter baumannii]
 gi|294715539|gb|ADF30863.1| homologous recombination factor [Acinetobacter baumannii]
 gi|315274477|gb|ADU03669.1| homologous recombination factor [Acinetobacter baumannii]
          Length = 124

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 93/124 (75%), Positives = 110/124 (88%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IAQ QK+GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLVRSG
Sbjct: 1   LQAIAQCQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FINQ+R
Sbjct: 61  AIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFINQIR 120

Query: 205 MKIG 208
           MKIG
Sbjct: 121 MKIG 124


>gi|289496104|gb|ADC98092.1| recombination protein RecA [Vibrio sp. 7G08]
          Length = 131

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 93/131 (70%), Positives = 113/131 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IAQ+QK G TCAF+DAEHALD IYA+KLGVD+  LL SQPDTGEQALEI D L R
Sbjct: 1   LTLEVIAQAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLCSQPDTGEQALEIVDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 61  SGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|180050799|gb|ACB87013.1| RecA [Bacteriovorax sp. SAN2]
          Length = 132

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 92/130 (70%), Positives = 112/130 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ QK GGT AF+DAEHAL
Sbjct: 3   ISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEHAL 62

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++DSVAALTPRAE+EGDM
Sbjct: 63  DTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIVDSVAALTPRAELEGDM 122

Query: 168 GESLPGMQAR 177
           G+S  G  ++
Sbjct: 123 GDSHMGXPSK 132


>gi|73918634|gb|AAZ93945.1| homologous recombination factor [Acinetobacter calcoaceticus]
 gi|73918652|gb|AAZ93954.1| homologous recombination factor [Acinetobacter calcoaceticus]
          Length = 124

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 93/124 (75%), Positives = 109/124 (87%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IAQ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLVRSG
Sbjct: 1   LQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FINQ+R
Sbjct: 61  AIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFINQIR 120

Query: 205 MKIG 208
           MKIG
Sbjct: 121 MKIG 124


>gi|73918654|gb|AAZ93955.1| homologous recombination factor [Acinetobacter baumannii]
          Length = 124

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 93/124 (75%), Positives = 109/124 (87%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IAQ QK+GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLVRSG
Sbjct: 1   LQAIAQCQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A+D+IV+DSVAALTP+AEIEG MG+S  G+QARLMSQALRK+T +  RS C+++FINQ+R
Sbjct: 61  AIDLIVVDSVAALTPKAEIEGQMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFINQIR 120

Query: 205 MKIG 208
           MKIG
Sbjct: 121 MKIG 124


>gi|73918656|gb|AAZ93956.1| homologous recombination factor [Acinetobacter calcoaceticus DSM
           30006]
          Length = 124

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 93/124 (75%), Positives = 109/124 (87%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IAQ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLVRSG
Sbjct: 1   LQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FINQ+R
Sbjct: 61  AIDMIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFINQIR 120

Query: 205 MKIG 208
           MKIG
Sbjct: 121 MKIG 124


>gi|195542112|gb|ACF98270.1| recombinase protein A [Mesorhizobium sp. CCBAU 65321]
 gi|195542114|gb|ACF98271.1| recombinase protein A [Mesorhizobium sp. CCBAU 65323]
 gi|195542116|gb|ACF98272.1| recombinase protein A [Mesorhizobium sp. CCBAU 65324]
 gi|195542118|gb|ACF98273.1| recombinase protein A [Mesorhizobium sp. CCBAU 65336]
          Length = 116

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 97/116 (83%), Positives = 110/116 (94%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD 
Sbjct: 1   TGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG
Sbjct: 61  VYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEG 116


>gi|297374120|emb|CBL88076.1| recombinase A [Marichromatium sp. JA550]
 gi|297374122|emb|CBL88077.1| recombinase A [Marichromatium sp. JA553]
 gi|300603350|emb|CBN08580.1| recombinase A [Marichromatium sp. JA552]
 gi|300603364|emb|CBN08587.1| recombinase A [Marichromatium sp. JA540]
 gi|300603425|emb|CBN73206.1| recombinase A [Marichromatium sp. JA537]
          Length = 118

 Score =  199 bits (506), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 92/118 (77%), Positives = 109/118 (92%)

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
           T AFVDAEHALD +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAA
Sbjct: 1   TAAFVDAEHALDPVYAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAA 60

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           LTP+AEIEG+MG+S  G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMFGSP
Sbjct: 61  LTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSP 118


>gi|210163634|gb|ACJ09798.1| recombinase A [Marichromatium purpuratum]
 gi|210163660|gb|ACJ09799.1| recombinase A [Marichromatium purpuratum]
 gi|210163689|gb|ACJ09800.1| recombinase A [Marichromatium sp. SW26]
 gi|210163714|gb|ACJ09801.1| recombinase A [Marichromatium sp. CLA37]
 gi|210163745|gb|ACJ09802.1| recombinase A [Marichromatium gracile]
 gi|210163774|gb|ACJ09803.1| recombinase A [Marichromatium sp. WS-2008]
 gi|210163816|gb|ACJ09805.1| recombinase A [Marichromatium sp. MP1]
 gi|210163840|gb|ACJ09806.1| recombinase A [Marichromatium indicum]
          Length = 122

 Score =  199 bits (506), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 93/122 (76%), Positives = 111/122 (90%)

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GGT AFVDAEHALD +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD+
Sbjct: 1   AEVQKLGGTAAFVDAEHALDPVYAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDV 60

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT +I RS C++VFINQ+RMKIG
Sbjct: 61  VIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIG 120

Query: 209 VM 210
           VM
Sbjct: 121 VM 122


>gi|210163789|gb|ACJ09804.1| recombinase A [Marichromatium bheemlicum]
          Length = 122

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 93/122 (76%), Positives = 111/122 (90%)

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GGT AFVDAEHALD +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD+
Sbjct: 1   AEVQKRGGTAAFVDAEHALDPVYAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDV 60

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT +I RS C++VFINQ+RMKIG
Sbjct: 61  VIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIG 120

Query: 209 VM 210
           VM
Sbjct: 121 VM 122


>gi|326496625|dbj|BAJ98339.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 336

 Score =  199 bits (505), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 99/173 (57%), Positives = 127/173 (73%), Gaps = 4/173 (2%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           ++D+ KAL+AA++ I   +GKG++ +LGS G  F  +E   SG L LD ALG GG PKGR
Sbjct: 61  LIDRQKALDAAMTDINNSFGKGSVTRLGSAGGAF--VETFPSGCLTLDFALG-GGLPKGR 117

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VE+YGPESSGKTTLALH IA+ QK GG    VDAEHA D  Y++ LGVD++NL++ QPD
Sbjct: 118 VVEVYGPESSGKTTLALHAIAEIQKLGGNAMLVDAEHAFDPAYSKALGVDIENLIVCQPD 177

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
            GE ALEI D + RSGA+D+I IDSV+ALTPRAEIE    E + G++ R+  Q
Sbjct: 178 NGEMALEIADRMCRSGAIDLICIDSVSALTPRAEIEAKGDEDI-GVKVRVRVQ 229



 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 61/90 (67%)

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           D   G + RV+V K+K++ P+KQ EF+IM+GEG+S  G ++D      +V K G+W+S+K
Sbjct: 217 DEDIGVKVRVRVQKSKVSRPYKQAEFEIMFGEGVSKLGCILDCAELMEVVAKKGSWYSYK 276

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLR 332
             RLGQGRE S  +LREN  + + IE ++R
Sbjct: 277 DIRLGQGREKSLQYLRENPTVCDEIEKVVR 306


>gi|32468602|emb|CAD88431.1| RecA protein [Porphyromonas gingivalis]
 gi|32468604|emb|CAD88432.1| RecA protein [Porphyromonas gingivalis]
 gi|32468606|emb|CAD88433.1| RecA protein [Porphyromonas gingivalis]
 gi|32468608|emb|CAD88434.1| RecA protein [Porphyromonas gingivalis]
 gi|32468610|emb|CAD88435.1| RecA protein [Porphyromonas gingivalis]
 gi|32468612|emb|CAD88436.1| RecA protein [Porphyromonas gingivalis]
 gi|32468614|emb|CAD88437.1| RecA protein [Porphyromonas gingivalis]
 gi|32468616|emb|CAD88438.1| RecA protein [Porphyromonas gingivalis]
 gi|32468618|emb|CAD88439.1| RecA protein [Porphyromonas gingivalis]
 gi|32468620|emb|CAD88440.1| RecA protein [Porphyromonas gingivalis]
 gi|32468622|emb|CAD88441.1| RecA protein [Porphyromonas gingivalis]
 gi|32468624|emb|CAD88442.1| RecA protein [Porphyromonas gingivalis]
 gi|32468626|emb|CAD88443.1| RecA protein [Porphyromonas gingivalis]
 gi|32468628|emb|CAD88444.1| RecA protein [Porphyromonas gingivalis]
 gi|32468630|emb|CAD88445.1| RecA protein [Porphyromonas gingivalis]
 gi|32468632|emb|CAD88446.1| RecA protein [Porphyromonas gingivalis]
 gi|32468634|emb|CAD88447.1| RecA protein [Porphyromonas gingivalis]
 gi|32468636|emb|CAD88448.1| RecA protein [Porphyromonas gingivalis]
 gi|32468638|emb|CAD88449.1| RecA protein [Porphyromonas gingivalis]
          Length = 133

 Score =  199 bits (505), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 92/133 (69%), Positives = 112/133 (84%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G+P+GRI+EIYGPESSGKTTLA+H IA++QK GG  A +DAEHA D  YA KLGV++ NL
Sbjct: 1   GYPRGRIIEIYGPESSGKTTLAIHAIAEAQKAGGLAAIIDAEHAFDRTYAEKLGVNVDNL 60

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
            I+QPD GEQALEI + L+RS AVDIIVIDSVAALTP+AEIEG+MG++  G+ ARLMSQA
Sbjct: 61  WIAQPDNGEQALEIAEQLIRSSAVDIIVIDSVAALTPKAEIEGEMGDNKVGLHARLMSQA 120

Query: 183 LRKLTSSISRSKC 195
           LRK+T +IS+S  
Sbjct: 121 LRKMTGAISKSNT 133


>gi|193494080|gb|ACF18030.1| recombinase A [Enterobacter sp. Ng5b]
          Length = 133

 Score =  199 bits (505), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 92/133 (69%), Positives = 113/133 (84%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTGEQALEI D L R
Sbjct: 1   LTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ
Sbjct: 61  SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 120

Query: 203 MRMKIGVMFGSPE 215
           +RMKIGVMFG+PE
Sbjct: 121 IRMKIGVMFGNPE 133


>gi|30959142|gb|AAO73330.1| recombinase [Helicobacter pylori]
          Length = 125

 Score =  199 bits (505), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 90/124 (72%), Positives = 111/124 (89%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEH
Sbjct: 1   DAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+G
Sbjct: 61  ALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDG 120

Query: 166 DMGE 169
           DMG+
Sbjct: 121 DMGD 124


>gi|73918668|gb|AAZ93962.1| homologous recombination factor [Acinetobacter baumannii]
          Length = 124

 Score =  199 bits (505), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 92/124 (74%), Positives = 109/124 (87%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IAQ QK+GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLVRSG
Sbjct: 1   LQAIAQCQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FINQ+R
Sbjct: 61  AIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFINQIR 120

Query: 205 MKIG 208
           MK G
Sbjct: 121 MKTG 124


>gi|289496046|gb|ADC98063.1| recombination protein RecA [Vibrio sp. 7A02]
 gi|289496062|gb|ADC98071.1| recombination protein RecA [Vibrio sp. 7B10]
 gi|289496102|gb|ADC98091.1| recombination protein RecA [Vibrio sp. 7G03]
 gi|289496106|gb|ADC98093.1| recombination protein RecA [Vibrio sp. 7G10]
          Length = 131

 Score =  199 bits (505), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 92/131 (70%), Positives = 113/131 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L TIA +Q+   TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L R
Sbjct: 1   LTLETIAAAQRVNKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IVIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 61  SGAVDLIVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|289496334|gb|ADC98207.1| recombination protein RecA [Vibrio sp. 13E06]
          Length = 131

 Score =  198 bits (504), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 91/131 (69%), Positives = 113/131 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L R
Sbjct: 1   LTLEVIAAAQKAGKTCAFIDAEHALDPIYAKKLGVDIDQLLVSQPDTGEQALEIADALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVDI+V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RK+T ++ +S C+ +FINQ
Sbjct: 61  SGAVDILVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKITGNLKQSNCMCIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|30959144|gb|AAO73331.1| recombinase [Helicobacter pylori]
          Length = 125

 Score =  198 bits (504), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 90/122 (73%), Positives = 110/122 (90%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHAL
Sbjct: 3   ISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHAL 62

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDM
Sbjct: 63  DVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM 122

Query: 168 GE 169
           G+
Sbjct: 123 GD 124


>gi|289496432|gb|ADC98256.1| recombination protein RecA [Vibrio sp. 14C03]
          Length = 131

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 91/131 (69%), Positives = 113/131 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +QK G TCAF+DAEHALD IYA+KLGVD+ NLL+SQPDTGEQALEI D L R
Sbjct: 1   LTLEVIAAAQKQGKTCAFIDAEHALDPIYAQKLGVDIDNLLVSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++V+DSVAALTP+AEIEG+MG+S  G+QARL+SQ++RK+T ++  S C+ +FINQ
Sbjct: 61  SGAVDVLVVDSVAALTPKAEIEGEMGDSHMGLQARLLSQSMRKMTGNLKASNCMAIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|297374124|emb|CBL88078.1| recombinase A [Marichromatium sp. JA349]
          Length = 118

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 92/118 (77%), Positives = 109/118 (92%)

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
           T AFVDAEHALD +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAA
Sbjct: 1   TAAFVDAEHALDPVYAEKLGVRVEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAA 60

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           LTP+AEIEG+MG+S  G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMFGSP
Sbjct: 61  LTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSP 118


>gi|24251193|gb|AAN46110.1| RecA [Bacillus infernus]
          Length = 144

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 93/139 (66%), Positives = 118/139 (84%)

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           IIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I++SK I +FINQ+R KI
Sbjct: 1   IIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAINKSKTIAIFINQVREKI 60

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETT GG ALKFY+S+RL++RR  +IK  + + GN+T++KVVKNK+A PF+  E
Sbjct: 61  GVMFGNPETTPGGRALKFYASIRLEVRRAETIKQGNEMVGNKTKIKVVKNKVAPPFRTAE 120

Query: 268 FDIMYGEGISFFGELIDLG 286
            DIMYGEGIS  GEL+D+G
Sbjct: 121 VDIMYGEGISKEGELVDIG 139


>gi|289496074|gb|ADC98077.1| recombination protein RecA [Vibrio sp. 7C12]
 gi|289496486|gb|ADC98283.1| recombination protein RecA [Vibrio sp. 14E11]
          Length = 130

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 92/129 (71%), Positives = 112/129 (86%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSG
Sbjct: 2   LEAIACAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEIVDALARSG 61

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           AVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ VFINQ+R
Sbjct: 62  AVDMIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCVFINQIR 121

Query: 205 MKIGVMFGS 213
           MKIGVMFG+
Sbjct: 122 MKIGVMFGN 130


>gi|289495938|gb|ADC98009.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289495942|gb|ADC98011.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289495944|gb|ADC98012.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289495952|gb|ADC98016.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289495954|gb|ADC98017.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289495956|gb|ADC98018.1| recombination protein RecA [Vibrio sp. 1A10]
 gi|289495962|gb|ADC98021.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289495974|gb|ADC98027.1| recombination protein RecA [Vibrio sp. 1B10]
 gi|289495982|gb|ADC98031.1| recombination protein RecA [Vibrio sp. 1C03]
 gi|289495984|gb|ADC98032.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289495988|gb|ADC98034.1| recombination protein RecA [Vibrio sp. 1C06]
 gi|289495990|gb|ADC98035.1| recombination protein RecA [Vibrio sp. 1C07]
 gi|289495992|gb|ADC98036.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289495994|gb|ADC98037.1| recombination protein RecA [Vibrio sp. 1C09]
 gi|289495998|gb|ADC98039.1| recombination protein RecA [Vibrio sp. 1C12]
 gi|289496000|gb|ADC98040.1| recombination protein RecA [Vibrio sp. 1D01]
 gi|289496002|gb|ADC98041.1| recombination protein RecA [Vibrio sp. 1D02]
 gi|289496004|gb|ADC98042.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496010|gb|ADC98045.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496012|gb|ADC98046.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496016|gb|ADC98048.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496018|gb|ADC98049.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496022|gb|ADC98051.1| recombination protein RecA [Vibrio sp. 1E01]
 gi|289496024|gb|ADC98052.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496026|gb|ADC98053.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496028|gb|ADC98054.1| recombination protein RecA [Vibrio sp. 1E04]
 gi|289496030|gb|ADC98055.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496032|gb|ADC98056.1| recombination protein RecA [Vibrio sp. 1E06]
 gi|289496034|gb|ADC98057.1| recombination protein RecA [Vibrio sp. 1E07]
 gi|289496036|gb|ADC98058.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496038|gb|ADC98059.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496042|gb|ADC98061.1| recombination protein RecA [Vibrio sp. 1E12]
 gi|289496114|gb|ADC98097.1| recombination protein RecA [Vibrio sp. 12A01]
 gi|289496122|gb|ADC98101.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496124|gb|ADC98102.1| recombination protein RecA [Vibrio sp. 12A06]
 gi|289496126|gb|ADC98103.1| recombination protein RecA [Vibrio sp. 12A08]
 gi|289496142|gb|ADC98111.1| recombination protein RecA [Vibrio sp. 12B04]
 gi|289496152|gb|ADC98116.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496158|gb|ADC98119.1| recombination protein RecA [Vibrio sp. 12C01]
 gi|289496164|gb|ADC98122.1| recombination protein RecA [Vibrio sp. 12C04]
 gi|289496170|gb|ADC98125.1| recombination protein RecA [Vibrio sp. 12C09]
 gi|289496172|gb|ADC98126.1| recombination protein RecA [Vibrio sp. 12C11]
 gi|289496174|gb|ADC98127.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496192|gb|ADC98136.1| recombination protein RecA [Vibrio sp. 12E05]
 gi|289496208|gb|ADC98144.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496224|gb|ADC98152.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496228|gb|ADC98154.1| recombination protein RecA [Vibrio sp. 12H09]
 gi|289496230|gb|ADC98155.1| recombination protein RecA [Vibrio sp. 12H10]
 gi|289496234|gb|ADC98157.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496236|gb|ADC98158.1| recombination protein RecA [Vibrio sp. 12E12]
 gi|289496242|gb|ADC98161.1| recombination protein RecA [Vibrio sp. 12F10]
 gi|289496250|gb|ADC98165.1| recombination protein RecA [Vibrio sp. 12G04]
 gi|289496252|gb|ADC98166.1| recombination protein RecA [Vibrio sp. 12G05]
 gi|289496256|gb|ADC98168.1| recombination protein RecA [Vibrio sp. 12G07]
 gi|289496264|gb|ADC98172.1| recombination protein RecA [Vibrio sp. 13A02]
 gi|289496270|gb|ADC98175.1| recombination protein RecA [Vibrio sp. 13A08]
 gi|289496272|gb|ADC98176.1| recombination protein RecA [Vibrio sp. 13A10]
 gi|289496282|gb|ADC98181.1| recombination protein RecA [Vibrio sp. 13B07]
 gi|289496284|gb|ADC98182.1| recombination protein RecA [Vibrio sp. 13B08]
 gi|289496288|gb|ADC98184.1| recombination protein RecA [Vibrio sp. 13B11]
 gi|289496292|gb|ADC98186.1| recombination protein RecA [Vibrio sp. 13C01]
 gi|289496296|gb|ADC98188.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496298|gb|ADC98189.1| recombination protein RecA [Vibrio sp. 13C06]
 gi|289496302|gb|ADC98191.1| recombination protein RecA [Vibrio sp. 13C10]
 gi|289496304|gb|ADC98192.1| recombination protein RecA [Vibrio sp. 13C11]
 gi|289496310|gb|ADC98195.1| recombination protein RecA [Vibrio sp. 13D02]
 gi|289496312|gb|ADC98196.1| recombination protein RecA [Vibrio sp. 13D03]
 gi|289496314|gb|ADC98197.1| recombination protein RecA [Vibrio sp. 13D04]
 gi|289496316|gb|ADC98198.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496318|gb|ADC98199.1| recombination protein RecA [Vibrio sp. 13D09]
 gi|289496322|gb|ADC98201.1| recombination protein RecA [Vibrio sp. 13D11]
 gi|289496326|gb|ADC98203.1| recombination protein RecA [Vibrio sp. 13E01]
 gi|289496330|gb|ADC98205.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496332|gb|ADC98206.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496336|gb|ADC98208.1| recombination protein RecA [Vibrio sp. 13E07]
 gi|289496340|gb|ADC98210.1| recombination protein RecA [Vibrio sp. 13E10]
 gi|289496342|gb|ADC98211.1| recombination protein RecA [Vibrio sp. 13E11]
 gi|289496344|gb|ADC98212.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496348|gb|ADC98214.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496352|gb|ADC98216.1| recombination protein RecA [Vibrio sp. 13F07]
 gi|289496354|gb|ADC98217.1| recombination protein RecA [Vibrio sp. 13F08]
 gi|289496356|gb|ADC98218.1| recombination protein RecA [Vibrio sp. 13F10]
 gi|289496358|gb|ADC98219.1| recombination protein RecA [Vibrio sp. 13F11]
 gi|289496360|gb|ADC98220.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496364|gb|ADC98222.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496366|gb|ADC98223.1| recombination protein RecA [Vibrio sp. 13G09]
 gi|289496370|gb|ADC98225.1| recombination protein RecA [Vibrio sp. 13G12]
 gi|289496374|gb|ADC98227.1| recombination protein RecA [Vibrio sp. 13H03]
 gi|289496378|gb|ADC98229.1| recombination protein RecA [Vibrio sp. 13H05]
 gi|289496380|gb|ADC98230.1| recombination protein RecA [Vibrio sp. 13H06]
 gi|289496382|gb|ADC98231.1| recombination protein RecA [Vibrio sp. 13H07]
 gi|289496384|gb|ADC98232.1| recombination protein RecA [Vibrio sp. 13H11]
 gi|289496392|gb|ADC98236.1| recombination protein RecA [Vibrio sp. 14A05]
 gi|289496394|gb|ADC98237.1| recombination protein RecA [Vibrio sp. 14A06]
 gi|289496402|gb|ADC98241.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496408|gb|ADC98244.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496412|gb|ADC98246.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496416|gb|ADC98248.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496446|gb|ADC98263.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496448|gb|ADC98264.1| recombination protein RecA [Vibrio sp. 14C11]
 gi|289496458|gb|ADC98269.1| recombination protein RecA [Vibrio sp. 14D07]
 gi|289496474|gb|ADC98277.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496478|gb|ADC98279.1| recombination protein RecA [Vibrio sp. 14E07]
 gi|289496500|gb|ADC98290.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496504|gb|ADC98292.1| recombination protein RecA [Vibrio sp. 14F09]
 gi|289496514|gb|ADC98297.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496516|gb|ADC98298.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496522|gb|ADC98301.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496524|gb|ADC98302.1| recombination protein RecA [Vibrio sp. 14G12]
 gi|289496528|gb|ADC98304.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496532|gb|ADC98306.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496538|gb|ADC98309.1| recombination protein RecA [Vibrio sp. 14H08]
          Length = 131

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 92/131 (70%), Positives = 113/131 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L R
Sbjct: 1   LTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGA+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 61  SGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|289496080|gb|ADC98080.1| recombination protein RecA [Vibrio sp. 7D08]
          Length = 131

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 92/131 (70%), Positives = 112/131 (85%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L TIA +Q+   TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L R
Sbjct: 1   LTLETIAAAQRVNKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IVIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++  S C+ +FINQ
Sbjct: 61  SGAVDLIVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKTSNCMCIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|289495968|gb|ADC98024.1| recombination protein RecA [Vibrio sp. 1B04]
          Length = 131

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 90/131 (68%), Positives = 113/131 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L R
Sbjct: 1   LTLECIAAAQKQGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 61  SGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|24251174|gb|AAN46107.1| RecA [Bacillus sp. 2-9-3]
          Length = 144

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 93/139 (66%), Positives = 117/139 (84%)

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           IIV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I++SK   +FINQ+R K+
Sbjct: 1   IIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAINKSKTTAIFINQIREKV 60

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETT GG ALKFYSSVRL++RR  S+K  + + GN+ R+KVVKNK+A PFKQ E
Sbjct: 61  GVMFGNPETTPGGRALKFYSSVRLEVRRAESLKQGNDMVGNKARIKVVKNKVAPPFKQAE 120

Query: 268 FDIMYGEGISFFGELIDLG 286
            DIMYGEGIS  GE++D+G
Sbjct: 121 VDIMYGEGISKEGEILDIG 139


>gi|289495970|gb|ADC98025.1| recombination protein RecA [Vibrio sp. 1B07]
 gi|289495986|gb|ADC98033.1| recombination protein RecA [Vibrio sp. 1C05]
 gi|289496308|gb|ADC98194.1| recombination protein RecA [Vibrio sp. 13D01]
 gi|289496386|gb|ADC98233.1| recombination protein RecA [Vibrio sp. 13H12]
          Length = 131

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 91/131 (69%), Positives = 113/131 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L R
Sbjct: 1   LTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 61  SGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|70904857|gb|AAZ14008.1| RecA [Burkholderia cenocepacia]
          Length = 137

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 98/138 (71%), Positives = 117/138 (84%), Gaps = 1/138 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRA 161
           G++D+IVIDSVAAL P+A
Sbjct: 120 GSIDMIVIDSVAALVPKA 137


>gi|33087825|gb|AAP93043.1| recombination protein A [Yersinia intermedia ATCC 29909]
          Length = 133

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 96/135 (71%), Positives = 112/135 (82%), Gaps = 2/135 (1%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQ 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAV
Sbjct: 59  VIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAV 118

Query: 147 DIIVIDSVAALTPRA 161
           D+I++DSVAALTP+A
Sbjct: 119 DVIIVDSVAALTPKA 133


>gi|24251206|gb|AAN46113.1| RecA [Virgibacillus salexigens]
          Length = 144

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 92/139 (66%), Positives = 117/139 (84%)

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           IIV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I++SK   +FINQ+R K+
Sbjct: 1   IIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAINKSKTTAIFINQIREKV 60

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETT GG ALKFYSSVRL++RR  ++K  + + GN+ R+KVVKNK+A PFKQ E
Sbjct: 61  GVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNEMVGNKARIKVVKNKVAPPFKQAE 120

Query: 268 FDIMYGEGISFFGELIDLG 286
            D+MYGEGIS  GE+ID+G
Sbjct: 121 VDVMYGEGISKEGEIIDIG 139


>gi|289495946|gb|ADC98013.1| recombination protein RecA [Vibrio sp. 1A05]
 gi|289495958|gb|ADC98019.1| recombination protein RecA [Vibrio sp. 1A11]
 gi|289495966|gb|ADC98023.1| recombination protein RecA [Vibrio sp. 1B03]
 gi|289496286|gb|ADC98183.1| recombination protein RecA [Vibrio sp. 13B10]
 gi|289496512|gb|ADC98296.1| recombination protein RecA [Vibrio sp. 14G04]
 gi|289496530|gb|ADC98305.1| recombination protein RecA [Vibrio sp. 14H04]
          Length = 130

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 91/129 (70%), Positives = 112/129 (86%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSG
Sbjct: 2   LEAIACAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEICDALARSG 61

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           AVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+R
Sbjct: 62  AVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIR 121

Query: 205 MKIGVMFGS 213
           MKIGVMFG+
Sbjct: 122 MKIGVMFGN 130


>gi|289496162|gb|ADC98121.1| recombination protein RecA [Vibrio sp. 12C03]
          Length = 131

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 90/131 (68%), Positives = 113/131 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L R
Sbjct: 1   LTLELIAAAQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 61  SGAIDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|213012418|gb|ACJ38775.1| recombination-repair protein [Vibrio sinaloensis]
          Length = 130

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 91/130 (70%), Positives = 113/130 (86%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++++S C+
Sbjct: 61  CDALARSGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLNKSNCM 120

Query: 197 LVFINQMRMK 206
            +FINQ+RMK
Sbjct: 121 CIFINQIRMK 130


>gi|289496144|gb|ADC98112.1| recombination protein RecA [Vibrio sp. 12B05]
 gi|289496206|gb|ADC98143.1| recombination protein RecA [Vibrio sp. 12F05]
 gi|289496240|gb|ADC98160.1| recombination protein RecA [Vibrio sp. 12F08]
          Length = 130

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 89/129 (68%), Positives = 113/129 (87%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA +QK G TCAF+DAEHALD IYA+KLGVD+ +LL+SQPDTGEQALEI D L RSG
Sbjct: 2   LECIAAAQKQGKTCAFIDAEHALDPIYAKKLGVDIDSLLVSQPDTGEQALEICDALARSG 61

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+R
Sbjct: 62  AIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIR 121

Query: 205 MKIGVMFGS 213
           MKIGVMFG+
Sbjct: 122 MKIGVMFGN 130


>gi|289496426|gb|ADC98253.1| recombination protein RecA [Vibrio sp. 14B12]
 gi|289496484|gb|ADC98282.1| recombination protein RecA [Vibrio sp. 14E10]
 gi|289496546|gb|ADC98313.1| recombination protein RecA [Vibrio sp. 14H12]
          Length = 131

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 91/131 (69%), Positives = 113/131 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L R
Sbjct: 1   LTLELIAAAQKVGKTCAFIDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGA+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 61  SGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|300603360|emb|CBN08585.1| recombinase A [Marichromatium sp. JA546]
          Length = 116

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 91/116 (78%), Positives = 108/116 (93%)

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AFVDAEHALD +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAALT
Sbjct: 1   AFVDAEHALDPVYAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAALT 60

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           P+AEIEG+MG+S  G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMFGSP
Sbjct: 61  PKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSP 116


>gi|300603362|emb|CBN08586.1| recombinase A [Marichromatium sp. JA509]
          Length = 118

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 91/116 (78%), Positives = 108/116 (93%)

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AFVDAEHALD +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAALT
Sbjct: 3   AFVDAEHALDPVYAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAALT 62

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           P+AEIEG+MG+S  G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMFGSP
Sbjct: 63  PKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSP 118


>gi|90569107|gb|ABD94444.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|126681001|gb|ABO26555.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|310697315|gb|ADP06593.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
          Length = 109

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 95/109 (87%), Positives = 101/109 (92%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           GLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YAR
Sbjct: 1   GLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYAR 60

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           KLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VIDSVAAL PRAE
Sbjct: 61  KLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVIDSVAALVPRAE 109


>gi|29119699|emb|CAD79375.1| RecA protein [Burkholderia fungorum]
          Length = 147

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 102/146 (69%), Positives = 126/146 (86%), Gaps = 1/146 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG++M+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAA 156
           EQALEI D LVRSG++D+IVIDSVAA
Sbjct: 122 EQALEIADALVRSGSIDMIVIDSVAA 147


>gi|42540761|gb|AAS19281.1| RecA [uncultured delta proteobacterium]
          Length = 136

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 95/134 (70%), Positives = 112/134 (83%)

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           G    GKTTLALH +A++ KTGG  AFVDAEHALD  YARKLGV   +LL+SQPDTGEQA
Sbjct: 3   GRSRRGKTTLALHIVAEAMKTGGIAAFVDAEHALDIGYARKLGVKTDDLLVSQPDTGEQA 62

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI + LVRSGA+D++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  IS+S
Sbjct: 63  LEIAETLVRSGAIDVLVVDSVAALVPKAEIEGDMGDSHMGLQARLMSQALRKLTGIISKS 122

Query: 194 KCILVFINQMRMKI 207
            C ++FINQ+RMKI
Sbjct: 123 NCCVIFINQIRMKI 136


>gi|289495972|gb|ADC98026.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289495978|gb|ADC98029.1| recombination protein RecA [Vibrio splendidus]
 gi|289495980|gb|ADC98030.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496008|gb|ADC98044.1| recombination protein RecA [Vibrio splendidus]
 gi|289496014|gb|ADC98047.1| recombination protein RecA [Vibrio sp. 1D09]
 gi|289496020|gb|ADC98050.1| recombination protein RecA [Vibrio splendidus]
 gi|289496040|gb|ADC98060.1| recombination protein RecA [Vibrio splendidus]
 gi|289496056|gb|ADC98068.1| recombination protein RecA [Vibrio splendidus]
 gi|289496108|gb|ADC98094.1| recombination protein RecA [Vibrio splendidus]
 gi|289496118|gb|ADC98099.1| recombination protein RecA [Vibrio splendidus]
 gi|289496128|gb|ADC98104.1| recombination protein RecA [Vibrio sp. 12A09]
 gi|289496132|gb|ADC98106.1| recombination protein RecA [Vibrio sp. 12A11]
 gi|289496134|gb|ADC98107.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496136|gb|ADC98108.1| recombination protein RecA [Vibrio splendidus]
 gi|289496148|gb|ADC98114.1| recombination protein RecA [Vibrio splendidus]
 gi|289496156|gb|ADC98118.1| recombination protein RecA [Vibrio splendidus]
 gi|289496166|gb|ADC98123.1| recombination protein RecA [Vibrio splendidus]
 gi|289496168|gb|ADC98124.1| recombination protein RecA [Vibrio splendidus]
 gi|289496176|gb|ADC98128.1| recombination protein RecA [Vibrio splendidus]
 gi|289496178|gb|ADC98129.1| recombination protein RecA [Vibrio splendidus]
 gi|289496180|gb|ADC98130.1| recombination protein RecA [Vibrio splendidus]
 gi|289496184|gb|ADC98132.1| recombination protein RecA [Vibrio splendidus]
 gi|289496186|gb|ADC98133.1| recombination protein RecA [Vibrio splendidus]
 gi|289496194|gb|ADC98137.1| recombination protein RecA [Vibrio splendidus]
 gi|289496196|gb|ADC98138.1| recombination protein RecA [Vibrio splendidus]
 gi|289496198|gb|ADC98139.1| recombination protein RecA [Vibrio splendidus]
 gi|289496200|gb|ADC98140.1| recombination protein RecA [Vibrio splendidus]
 gi|289496202|gb|ADC98141.1| recombination protein RecA [Vibrio splendidus]
 gi|289496226|gb|ADC98153.1| recombination protein RecA [Vibrio splendidus]
 gi|289496232|gb|ADC98156.1| recombination protein RecA [Vibrio splendidus]
 gi|289496254|gb|ADC98167.1| recombination protein RecA [Vibrio splendidus]
 gi|289496266|gb|ADC98173.1| recombination protein RecA [Vibrio splendidus]
 gi|289496268|gb|ADC98174.1| recombination protein RecA [Vibrio splendidus]
 gi|289496278|gb|ADC98179.1| recombination protein RecA [Vibrio splendidus]
 gi|289496280|gb|ADC98180.1| recombination protein RecA [Vibrio splendidus]
 gi|289496290|gb|ADC98185.1| recombination protein RecA [Vibrio sp. 13B12]
 gi|289496294|gb|ADC98187.1| recombination protein RecA [Vibrio splendidus]
 gi|289496300|gb|ADC98190.1| recombination protein RecA [Vibrio splendidus]
 gi|289496306|gb|ADC98193.1| recombination protein RecA [Vibrio splendidus]
 gi|289496328|gb|ADC98204.1| recombination protein RecA [Vibrio splendidus]
 gi|289496346|gb|ADC98213.1| recombination protein RecA [Vibrio splendidus]
 gi|289496376|gb|ADC98228.1| recombination protein RecA [Vibrio splendidus]
 gi|289496388|gb|ADC98234.1| recombination protein RecA [Vibrio splendidus]
 gi|289496390|gb|ADC98235.1| recombination protein RecA [Vibrio splendidus]
 gi|289496396|gb|ADC98238.1| recombination protein RecA [Vibrio splendidus]
 gi|289496400|gb|ADC98240.1| recombination protein RecA [Vibrio splendidus]
 gi|289496404|gb|ADC98242.1| recombination protein RecA [Vibrio splendidus]
 gi|289496406|gb|ADC98243.1| recombination protein RecA [Vibrio splendidus]
 gi|289496414|gb|ADC98247.1| recombination protein RecA [Vibrio splendidus]
 gi|289496418|gb|ADC98249.1| recombination protein RecA [Vibrio splendidus]
 gi|289496420|gb|ADC98250.1| recombination protein RecA [Vibrio splendidus]
 gi|289496422|gb|ADC98251.1| recombination protein RecA [Vibrio splendidus]
 gi|289496430|gb|ADC98255.1| recombination protein RecA [Vibrio splendidus]
 gi|289496434|gb|ADC98257.1| recombination protein RecA [Vibrio splendidus]
 gi|289496438|gb|ADC98259.1| recombination protein RecA [Vibrio splendidus]
 gi|289496444|gb|ADC98262.1| recombination protein RecA [Vibrio splendidus]
 gi|289496450|gb|ADC98265.1| recombination protein RecA [Vibrio splendidus]
 gi|289496452|gb|ADC98266.1| recombination protein RecA [Vibrio splendidus]
 gi|289496454|gb|ADC98267.1| recombination protein RecA [Vibrio splendidus]
 gi|289496460|gb|ADC98270.1| recombination protein RecA [Vibrio splendidus]
 gi|289496462|gb|ADC98271.1| recombination protein RecA [Vibrio splendidus]
 gi|289496468|gb|ADC98274.1| recombination protein RecA [Vibrio splendidus]
 gi|289496470|gb|ADC98275.1| recombination protein RecA [Vibrio splendidus]
 gi|289496476|gb|ADC98278.1| recombination protein RecA [Vibrio splendidus]
 gi|289496490|gb|ADC98285.1| recombination protein RecA [Vibrio splendidus]
 gi|289496496|gb|ADC98288.1| recombination protein RecA [Vibrio splendidus]
 gi|289496502|gb|ADC98291.1| recombination protein RecA [Vibrio splendidus]
 gi|289496506|gb|ADC98293.1| recombination protein RecA [Vibrio splendidus]
 gi|289496510|gb|ADC98295.1| recombination protein RecA [Vibrio splendidus]
 gi|289496520|gb|ADC98300.1| recombination protein RecA [Vibrio splendidus]
 gi|289496534|gb|ADC98307.1| recombination protein RecA [Vibrio splendidus]
 gi|289496536|gb|ADC98308.1| recombination protein RecA [Vibrio splendidus]
 gi|289496540|gb|ADC98310.1| recombination protein RecA [Vibrio splendidus]
 gi|289496542|gb|ADC98311.1| recombination protein RecA [Vibrio splendidus]
 gi|289496548|gb|ADC98314.1| recombination protein RecA [Vibrio splendidus]
          Length = 131

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 91/131 (69%), Positives = 113/131 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L R
Sbjct: 1   LTLELIAAAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGA+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 61  SGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|289495960|gb|ADC98020.1| recombination protein RecA [Vibrio sp. 1A12]
 gi|289495976|gb|ADC98028.1| recombination protein RecA [Vibrio sp. 1B11]
 gi|289496006|gb|ADC98043.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496188|gb|ADC98134.1| recombination protein RecA [Vibrio sp. 12D11]
 gi|289496214|gb|ADC98147.1| recombination protein RecA [Vibrio sp. 12G08]
 gi|289496276|gb|ADC98178.1| recombination protein RecA [Vibrio sp. 13A12]
 gi|289496338|gb|ADC98209.1| recombination protein RecA [Vibrio sp. 13E09]
 gi|289496410|gb|ADC98245.1| recombination protein RecA [Vibrio sp. 14B03]
 gi|289496480|gb|ADC98280.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496498|gb|ADC98289.1| recombination protein RecA [Vibrio sp. 14F06]
 gi|289496508|gb|ADC98294.1| recombination protein RecA [Vibrio sp. 14F11]
          Length = 130

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 91/129 (70%), Positives = 112/129 (86%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSG
Sbjct: 2   LELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSG 61

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+R
Sbjct: 62  AIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIR 121

Query: 205 MKIGVMFGS 213
           MKIGVMFG+
Sbjct: 122 MKIGVMFGN 130


>gi|289495940|gb|ADC98010.1| recombination protein RecA [Vibrio sp. 1A02]
          Length = 130

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 89/129 (68%), Positives = 112/129 (86%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSG
Sbjct: 2   LECIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSG 61

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+R
Sbjct: 62  AIDVMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIR 121

Query: 205 MKIGVMFGS 213
           MKIGVMFG+
Sbjct: 122 MKIGVMFGN 130


>gi|90569103|gb|ABD94442.1| DNA strand exchange and recombination protein [Sinorhizobium
           medicae]
 gi|90569111|gb|ABD94446.1| DNA strand exchange and recombination protein [Sinorhizobium
           medicae]
 gi|90569115|gb|ABD94448.1| DNA strand exchange and recombination protein [Sinorhizobium
           medicae]
          Length = 109

 Score =  196 bits (498), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 94/109 (86%), Positives = 101/109 (92%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           GLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYAR
Sbjct: 1   GLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYAR 60

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           KLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAE
Sbjct: 61  KLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAE 109


>gi|289496244|gb|ADC98162.1| recombination protein RecA [Vibrio sp. 12F11]
          Length = 131

 Score =  196 bits (498), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 90/131 (68%), Positives = 113/131 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L R
Sbjct: 1   LTLELIAAAQREGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 61  SGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|289496246|gb|ADC98163.1| recombination protein RecA [Vibrio sp. 12F12]
          Length = 131

 Score =  196 bits (498), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 92/131 (70%), Positives = 112/131 (85%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL SQPDTGEQALEI D L R
Sbjct: 1   LTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLXSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGA+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 61  SGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|73918650|gb|AAZ93953.1| homologous recombination factor [Acinetobacter calcoaceticus]
          Length = 124

 Score =  196 bits (498), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 90/124 (72%), Positives = 108/124 (87%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IAQ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLVRSG
Sbjct: 1   LQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN +R
Sbjct: 61  AIDMIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFINHIR 120

Query: 205 MKIG 208
           +K+G
Sbjct: 121 IKVG 124


>gi|289496466|gb|ADC98273.1| recombination protein RecA [Vibrio splendidus]
          Length = 130

 Score =  196 bits (497), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 89/129 (68%), Positives = 112/129 (86%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSG
Sbjct: 2   LEVIAAAQKQGKTCAFIDAEHALDPIYAQKLGVDIDGLLVSQPDTGEQALEICDALARSG 61

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+R
Sbjct: 62  AIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIR 121

Query: 205 MKIGVMFGS 213
           MKIGVMFG+
Sbjct: 122 MKIGVMFGN 130


>gi|29119655|emb|CAD79376.1| RecA protein [Burkholderia cepacia]
          Length = 147

 Score =  196 bits (497), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 104/146 (71%), Positives = 125/146 (85%), Gaps = 1/146 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLIS+PDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISRPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAA 156
           EQALEITD LVRSG++D+IVIDSVAA
Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAA 147


>gi|90569101|gb|ABD94441.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|90569105|gb|ABD94443.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|90569109|gb|ABD94445.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|90569113|gb|ABD94447.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|90569117|gb|ABD94449.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|90569119|gb|ABD94450.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|126680999|gb|ABO26554.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|169792009|gb|ACA80308.1| recombination protein A [Sinorhizobium meliloti]
          Length = 109

 Score =  196 bits (497), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 94/109 (86%), Positives = 101/109 (92%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           GLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YAR
Sbjct: 1   GLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYAR 60

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           KLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VIDSVAAL PRAE
Sbjct: 61  KLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVIDSVAALVPRAE 109


>gi|289496260|gb|ADC98170.1| recombination protein RecA [Vibrio splendidus]
 gi|289496372|gb|ADC98226.1| recombination protein RecA [Vibrio splendidus]
 gi|289496440|gb|ADC98260.1| recombination protein RecA [Vibrio splendidus]
 gi|289496526|gb|ADC98303.1| recombination protein RecA [Vibrio splendidus]
          Length = 130

 Score =  196 bits (497), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 89/129 (68%), Positives = 112/129 (86%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSG
Sbjct: 2   LEVIAAAQKQGKTCAFIDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSG 61

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+R
Sbjct: 62  AIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIR 121

Query: 205 MKIGVMFGS 213
           MKIGVMFG+
Sbjct: 122 MKIGVMFGN 130


>gi|289496130|gb|ADC98105.1| recombination protein RecA [Vibrio splendidus]
 gi|289496140|gb|ADC98110.1| recombination protein RecA [Vibrio splendidus]
 gi|289496368|gb|ADC98224.1| recombination protein RecA [Vibrio splendidus]
 gi|289496424|gb|ADC98252.1| recombination protein RecA [Vibrio splendidus]
          Length = 131

 Score =  196 bits (497), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 90/131 (68%), Positives = 113/131 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G TCAFVDAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L R
Sbjct: 1   LTLELIAAAQRVGKTCAFVDAEHALDPVYAQKLGVDIDALLVSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGA+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 61  SGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|289495964|gb|ADC98022.1| recombination protein RecA [Vibrio splendidus]
 gi|289496146|gb|ADC98113.1| recombination protein RecA [Vibrio splendidus]
 gi|289496216|gb|ADC98148.1| recombination protein RecA [Vibrio splendidus]
 gi|289496222|gb|ADC98151.1| recombination protein RecA [Vibrio splendidus]
 gi|289496258|gb|ADC98169.1| recombination protein RecA [Vibrio splendidus]
 gi|289496262|gb|ADC98171.1| recombination protein RecA [Vibrio splendidus]
 gi|289496324|gb|ADC98202.1| recombination protein RecA [Vibrio splendidus]
 gi|289496428|gb|ADC98254.1| recombination protein RecA [Vibrio splendidus]
 gi|289496464|gb|ADC98272.1| recombination protein RecA [Vibrio splendidus]
 gi|289496472|gb|ADC98276.1| recombination protein RecA [Vibrio splendidus]
 gi|289496544|gb|ADC98312.1| recombination protein RecA [Vibrio splendidus]
          Length = 131

 Score =  196 bits (497), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 90/131 (68%), Positives = 113/131 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  I+ +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L R
Sbjct: 1   LTLELISAAQKVGKTCAFIDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGA+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 61  SGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|289496150|gb|ADC98115.1| recombination protein RecA [Vibrio sp. 12B09]
 gi|289496442|gb|ADC98261.1| recombination protein RecA [Vibrio sp. 14C08]
          Length = 130

 Score =  195 bits (496), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 89/129 (68%), Positives = 112/129 (86%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA +Q+ G TCAF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSG
Sbjct: 2   LELIAAAQRVGKTCAFIDAEHALDPIYAKKLGVNIDELLVSQPDTGEQALEICDALARSG 61

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A+D+IVIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+R
Sbjct: 62  AIDVIVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIR 121

Query: 205 MKIGVMFGS 213
           MKIGVMFG+
Sbjct: 122 MKIGVMFGN 130


>gi|289496138|gb|ADC98109.1| recombination protein RecA [Vibrio sp. 12B02]
 gi|289496154|gb|ADC98117.1| recombination protein RecA [Vibrio sp. 12B11]
 gi|289496190|gb|ADC98135.1| recombination protein RecA [Vibrio sp. 12D12]
 gi|289496212|gb|ADC98146.1| recombination protein RecA [Vibrio sp. 12G03]
 gi|289496238|gb|ADC98159.1| recombination protein RecA [Vibrio sp. 12F07]
 gi|289496350|gb|ADC98215.1| recombination protein RecA [Vibrio sp. 13F06]
 gi|289496362|gb|ADC98221.1| recombination protein RecA [Vibrio sp. 13G07]
          Length = 131

 Score =  195 bits (496), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 88/131 (67%), Positives = 113/131 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L R
Sbjct: 1   LTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 61  SGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|30959136|gb|AAO73327.1| recombinase [Helicobacter pylori]
          Length = 125

 Score =  195 bits (496), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 88/124 (70%), Positives = 110/124 (88%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEH
Sbjct: 1   DAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+G
Sbjct: 61  ALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDG 120

Query: 166 DMGE 169
           DMG+
Sbjct: 121 DMGD 124


>gi|73918642|gb|AAZ93949.1| homologous recombination factor [Acinetobacter calcoaceticus]
          Length = 124

 Score =  195 bits (496), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 91/124 (73%), Positives = 108/124 (87%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IAQ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLVRSG
Sbjct: 1   LQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A+D+IV+DSVAALTP+AEI+G+MG+S  G+QARLMSQALRK+T +  RS C+ +FINQ+R
Sbjct: 61  AIDLIVVDSVAALTPKAEIDGEMGDSHMGLQARLMSQALRKITGNAKRSNCMGIFINQIR 120

Query: 205 MKIG 208
           MK+G
Sbjct: 121 MKMG 124


>gi|300603356|emb|CBN08583.1| recombinase A [Marichromatium sp. JA321]
          Length = 115

 Score =  195 bits (496), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 90/115 (78%), Positives = 107/115 (93%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           FVDAEHALD +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAALTP
Sbjct: 1   FVDAEHALDPVYAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAALTP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           +AEIEG+MG+S  G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMFGSP
Sbjct: 61  KAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSP 115


>gi|289607381|emb|CBI60814.1| unnamed protein product [Sordaria macrospora]
          Length = 209

 Score =  195 bits (496), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 92/151 (60%), Positives = 118/151 (78%), Gaps = 10/151 (6%)

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           +++FINQ+RMKIGVM+G+PETTTGGNALKFY+S          IKD+D I GN TRVKVV
Sbjct: 1   MVIFINQLRMKIGVMYGNPETTTGGNALKFYAS----------IKDRDEIIGNATRVKVV 50

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK+A PFKQVEFDIMYG+GIS  GE++DLGVKA +V+KSGAWFS+   R+GQGREN+K 
Sbjct: 51  KNKVAPPFKQVEFDIMYGQGISKIGEILDLGVKAGLVEKSGAWFSYDSVRIGQGRENAKT 110

Query: 316 FLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           FL E+ E+ + +E+ +RQ    VA+ ++  P
Sbjct: 111 FLTEHPELRDKLEASIRQRTEKVAEEMMTGP 141


>gi|6694849|gb|AAF25434.1|AF214787_1 RecA protein [Arthrobacter sulfureus]
          Length = 127

 Score =  195 bits (496), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 92/126 (73%), Positives = 111/126 (88%)

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA+KLGVD   LL+SQPDTGEQALEI DMLV SG+VDI+VIDSVAAL PRAEIEG+MG+S
Sbjct: 1   YAKKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSVDIVVIDSVAALVPRAEIEGEMGDS 60

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
             G+QARLMSQALRK+T  +S+++   +FINQ+R KIGVMFGSPETTTGG ALKFY+S+R
Sbjct: 61  HVGLQARLMSQALRKITGRLSQTRTTAIFINQLREKIGVMFGSPETTTGGKALKFYASIR 120

Query: 231 LDIRRV 236
           +D+RR+
Sbjct: 121 IDVRRI 126


>gi|289496182|gb|ADC98131.1| recombination protein RecA [Vibrio sp. 12D07]
 gi|290795165|gb|ADD64597.1| RecA recombinase [Vibrio sp. F10]
 gi|290795169|gb|ADD64599.1| RecA recombinase [Vibrio sp. F10]
 gi|290795171|gb|ADD64600.1| RecA recombinase [Vibrio sp. F10]
          Length = 130

 Score =  195 bits (496), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 90/129 (69%), Positives = 112/129 (86%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA +Q+ G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSG
Sbjct: 2   LELIAAAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSG 61

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+R
Sbjct: 62  AIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIR 121

Query: 205 MKIGVMFGS 213
           MKIGVMFG+
Sbjct: 122 MKIGVMFGN 130


>gi|180050827|gb|ACB87027.1| RecA [Bacteriovorax sp. GSL4C]
          Length = 143

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 91/128 (71%), Positives = 110/128 (85%), Gaps = 1/128 (0%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ QK GGT AF+DAEHAL
Sbjct: 16  ISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEHAL 75

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE-IEGD 166
           D+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++DSVAALTPRAE + GD
Sbjct: 76  DTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIVDSVAALTPRAELVRGD 135

Query: 167 MGESLPGM 174
           MG+S  G+
Sbjct: 136 MGDSHMGL 143


>gi|42766977|gb|AAS45518.1| putative recombinase [Clostridium difficile]
 gi|42766979|gb|AAS45519.1| putative recombinase [Clostridium difficile]
 gi|42766981|gb|AAS45520.1| putative recombinase [Clostridium difficile]
 gi|42766983|gb|AAS45521.1| putative recombinase [Clostridium difficile]
 gi|42766987|gb|AAS45523.1| putative recombinase [Clostridium difficile]
 gi|42766989|gb|AAS45524.1| putative recombinase [Clostridium difficile]
 gi|42766991|gb|AAS45525.1| putative recombinase [Clostridium difficile]
 gi|42766993|gb|AAS45526.1| putative recombinase [Clostridium difficile]
 gi|42766995|gb|AAS45527.1| putative recombinase [Clostridium difficile]
 gi|42766997|gb|AAS45528.1| putative recombinase [Clostridium difficile]
          Length = 126

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 90/126 (71%), Positives = 110/126 (87%)

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GA+DIIVIDSVAAL P+AEI+GDMG+S  G+QARLMSQALRKLT SI +S C+ +FINQ+
Sbjct: 1   GAIDIIVIDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQL 60

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           R K+G+MFG+PETTTGG ALKFYSSVRLD+R++ +IK  D + G++TRVKVVKNK+A PF
Sbjct: 61  REKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIGSRTRVKVVKNKVAPPF 120

Query: 264 KQVEFD 269
           KQ EFD
Sbjct: 121 KQAEFD 126


>gi|315112913|dbj|BAJ41736.1| recombinase A [Lactobacillus delbrueckii subsp. lactis]
 gi|315112919|dbj|BAJ41739.1| recombinase A [Lactobacillus delbrueckii subsp. lactis]
          Length = 137

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 89/137 (64%), Positives = 116/137 (84%)

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+  L++SQP+T
Sbjct: 1   VEIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAENAMDPAYAEALGVDIDQLILSQPNT 60

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL+ +
Sbjct: 61  GEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGT 120

Query: 190 ISRSKCILVFINQMRMK 206
           I+++K I +FINQ+R K
Sbjct: 121 IAKTKTIAIFINQIREK 137


>gi|289496116|gb|ADC98098.1| recombination protein RecA [Vibrio splendidus]
 gi|289496160|gb|ADC98120.1| recombination protein RecA [Vibrio splendidus]
 gi|289496274|gb|ADC98177.1| recombination protein RecA [Vibrio splendidus]
 gi|289496320|gb|ADC98200.1| recombination protein RecA [Vibrio splendidus]
 gi|289496482|gb|ADC98281.1| recombination protein RecA [Vibrio splendidus]
 gi|289496492|gb|ADC98286.1| recombination protein RecA [Vibrio splendidus]
 gi|289496494|gb|ADC98287.1| recombination protein RecA [Vibrio splendidus]
          Length = 131

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 90/131 (68%), Positives = 111/131 (84%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  I  +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L R
Sbjct: 1   LTLEVIGAAQKQGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QARL+SQ++RK+T ++  S C+ +FINQ
Sbjct: 61  SGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARLLSQSMRKMTGNLKASNCMCIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|54792198|emb|CAE54415.1| recombination-repair protein [Vibrio cyclitrophicus]
          Length = 124

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 89/124 (71%), Positives = 111/124 (89%)

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEI D L RSGA+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +
Sbjct: 1   ALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQ 60

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+
Sbjct: 61  SNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRI 120

Query: 253 KVVK 256
           KVVK
Sbjct: 121 KVVK 124


>gi|315112887|dbj|BAJ41723.1| recombinase A [Lactobacillus delbrueckii subsp. delbrueckii]
 gi|315112889|dbj|BAJ41724.1| recombinase A [Lactobacillus delbrueckii subsp. delbrueckii]
 gi|315112891|dbj|BAJ41725.1| recombinase A [Lactobacillus delbrueckii]
 gi|315112893|dbj|BAJ41726.1| recombinase A [Lactobacillus delbrueckii]
 gi|315112895|dbj|BAJ41727.1| recombinase A [Lactobacillus delbrueckii]
 gi|315112897|dbj|BAJ41728.1| recombinase A [Lactobacillus delbrueckii]
 gi|315112899|dbj|BAJ41729.1| recombinase A [Lactobacillus delbrueckii subsp. delbrueckii]
 gi|315112901|dbj|BAJ41730.1| recombinase A [Lactobacillus delbrueckii subsp. lactis]
 gi|315112903|dbj|BAJ41731.1| recombinase A [Lactobacillus delbrueckii subsp. lactis]
 gi|315112905|dbj|BAJ41732.1| recombinase A [Lactobacillus delbrueckii subsp. lactis]
 gi|315112907|dbj|BAJ41733.1| recombinase A [Lactobacillus delbrueckii subsp. lactis]
 gi|315112909|dbj|BAJ41734.1| recombinase A [Lactobacillus delbrueckii subsp. lactis]
 gi|315112911|dbj|BAJ41735.1| recombinase A [Lactobacillus delbrueckii subsp. lactis]
 gi|315112915|dbj|BAJ41737.1| recombinase A [Lactobacillus delbrueckii subsp. lactis]
 gi|315112917|dbj|BAJ41738.1| recombinase A [Lactobacillus delbrueckii subsp. lactis]
 gi|315112921|dbj|BAJ41740.1| recombinase A [Lactobacillus delbrueckii subsp. bulgaricus]
 gi|315112923|dbj|BAJ41741.1| recombinase A [Lactobacillus delbrueckii subsp. bulgaricus]
 gi|315112925|dbj|BAJ41742.1| recombinase A [Lactobacillus delbrueckii subsp. bulgaricus]
 gi|315112927|dbj|BAJ41743.1| recombinase A [Lactobacillus delbrueckii subsp. bulgaricus]
 gi|315112929|dbj|BAJ41744.1| recombinase A [Lactobacillus delbrueckii subsp. bulgaricus]
 gi|315112931|dbj|BAJ41745.1| recombinase A [Lactobacillus delbrueckii subsp. bulgaricus]
 gi|315112933|dbj|BAJ41746.1| recombinase A [Lactobacillus delbrueckii subsp. bulgaricus]
 gi|315112935|dbj|BAJ41747.1| recombinase A [Lactobacillus delbrueckii subsp. indicus]
 gi|315112937|dbj|BAJ41748.1| recombinase A [Lactobacillus delbrueckii subsp. delbrueckii]
 gi|315112939|dbj|BAJ41749.1| recombinase A [Lactobacillus delbrueckii subsp. delbrueckii]
 gi|315112941|dbj|BAJ41750.1| recombinase A [Lactobacillus delbrueckii subsp. indicus]
 gi|315112943|dbj|BAJ41751.1| recombinase A [Lactobacillus delbrueckii subsp. indicus]
 gi|315112945|dbj|BAJ41752.1| recombinase A [Lactobacillus delbrueckii subsp. indicus]
 gi|315112947|dbj|BAJ41753.1| recombinase A [Lactobacillus delbrueckii]
 gi|315112949|dbj|BAJ41754.1| recombinase A [Lactobacillus delbrueckii]
 gi|315112951|dbj|BAJ41755.1| recombinase A [Lactobacillus delbrueckii]
 gi|315112953|dbj|BAJ41756.1| recombinase A [Lactobacillus delbrueckii]
 gi|315112955|dbj|BAJ41757.1| recombinase A [Lactobacillus delbrueckii]
 gi|315112957|dbj|BAJ41758.1| recombinase A [Lactobacillus delbrueckii]
 gi|315112961|dbj|BAJ41760.1| recombinase A [Lactobacillus delbrueckii]
 gi|315112963|dbj|BAJ41761.1| recombinase A [Lactobacillus delbrueckii]
 gi|315112965|dbj|BAJ41762.1| recombinase A [Lactobacillus delbrueckii]
          Length = 137

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 89/137 (64%), Positives = 116/137 (84%)

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+  L++SQP+T
Sbjct: 1   VEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDQLILSQPNT 60

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL+ +
Sbjct: 61  GEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGT 120

Query: 190 ISRSKCILVFINQMRMK 206
           I+++K I +FINQ+R K
Sbjct: 121 IAKTKTIAIFINQIREK 137


>gi|289496044|gb|ADC98062.1| recombination protein RecA [Aliivibrio fischeri]
 gi|289496120|gb|ADC98100.1| recombination protein RecA [Aliivibrio fischeri]
 gi|289496218|gb|ADC98149.1| recombination protein RecA [Vibrio sp. 12G11]
 gi|289496436|gb|ADC98258.1| recombination protein RecA [Aliivibrio fischeri]
 gi|289496456|gb|ADC98268.1| recombination protein RecA [Vibrio sp. 14D06]
 gi|290795167|gb|ADD64598.1| RecA recombinase [Aliivibrio fischeri]
          Length = 131

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 89/131 (67%), Positives = 113/131 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L R
Sbjct: 1   LTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 61  SGAVDVMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|315112959|dbj|BAJ41759.1| recombinase A [Lactobacillus delbrueckii]
          Length = 137

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 89/137 (64%), Positives = 116/137 (84%)

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+  L++SQP+T
Sbjct: 1   VEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDQLILSQPNT 60

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL+ +
Sbjct: 61  GEEGLQIVDTLISSGAIDIVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGT 120

Query: 190 ISRSKCILVFINQMRMK 206
           I+++K I +FINQ+R K
Sbjct: 121 IAKTKTIAIFINQIREK 137


>gi|42766985|gb|AAS45522.1| putative recombinase [Clostridium difficile]
          Length = 126

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 89/126 (70%), Positives = 110/126 (87%)

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GA+DIIVIDSVAAL P+AEI+GDMG+S  G+QARLMSQALRKLT SI +S C+ +FINQ+
Sbjct: 1   GAIDIIVIDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQL 60

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           R K+G+MFG+PETTTGG ALKFYSS+RLD+R++ +IK  D + G++TRVKVVKNK+A PF
Sbjct: 61  REKVGIMFGNPETTTGGRALKFYSSIRLDVRKIDTIKQGDKVIGSRTRVKVVKNKVAPPF 120

Query: 264 KQVEFD 269
           KQ EFD
Sbjct: 121 KQAEFD 126


>gi|180050817|gb|ACB87022.1| RecA [Bacteriovorax sp. AQ]
          Length = 122

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 88/121 (72%), Positives = 106/121 (87%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +  +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ QK GGT AF+DAE
Sbjct: 2   VPAISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRSGAVD++++DSVAALTPRAE+E
Sbjct: 62  HALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSGAVDLLIVDSVAALTPRAELE 121

Query: 165 G 165
           G
Sbjct: 122 G 122


>gi|315112967|dbj|BAJ41763.1| recombinase A [Lactobacillus delbrueckii]
          Length = 137

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 88/137 (64%), Positives = 116/137 (84%)

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VE+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+  L++SQP+T
Sbjct: 1   VEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDQLILSQPNT 60

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL+ +
Sbjct: 61  GEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGT 120

Query: 190 ISRSKCILVFINQMRMK 206
           I+++K I +FINQ+R K
Sbjct: 121 IAKTKTIAIFINQIREK 137


>gi|269214650|ref|ZP_06158716.1| RecA protein [Neisseria lactamica ATCC 23970]
 gi|269209311|gb|EEZ75766.1| RecA protein [Neisseria lactamica ATCC 23970]
          Length = 152

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 86/128 (67%), Positives = 112/128 (87%)

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGVMFGSPETTTGGNALKFYSSVRLDIRR GSIK  + + GN+TRVKV+KNK+A PF+
Sbjct: 1   MKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNETRVKVIKNKVAPPFR 60

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           Q EFDI+YGEGIS+ GELID+GVK  I++KSGAW+S+ G ++GQG++N +++L+EN E+A
Sbjct: 61  QAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQGKDNVRVWLKENPEVA 120

Query: 325 ENIESLLR 332
           + I++ +R
Sbjct: 121 DEIDAKIR 128


>gi|289496210|gb|ADC98145.1| recombination protein RecA [Vibrio sp. 12G02]
 gi|289496220|gb|ADC98150.1| recombination protein RecA [Vibrio sp. 12G12]
 gi|289496248|gb|ADC98164.1| recombination protein RecA [Vibrio sp. 12G01]
          Length = 130

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/129 (67%), Positives = 112/129 (86%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSG
Sbjct: 2   LELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSG 61

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+R
Sbjct: 62  AIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIR 121

Query: 205 MKIGVMFGS 213
           MKIGVMFG+
Sbjct: 122 MKIGVMFGN 130


>gi|289495948|gb|ADC98014.1| recombination protein RecA [Vibrio breoganii]
 gi|289495950|gb|ADC98015.1| recombination protein RecA [Vibrio breoganii]
 gi|289495996|gb|ADC98038.1| recombination protein RecA [Vibrio breoganii]
 gi|289496058|gb|ADC98069.1| recombination protein RecA [Vibrio breoganii]
 gi|289496060|gb|ADC98070.1| recombination protein RecA [Vibrio breoganii]
          Length = 131

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 88/131 (67%), Positives = 113/131 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G TCAF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI D L R
Sbjct: 1   LTLELIAAAQREGKTCAFIDAEHALDPIYAQKLGVNIDALLVSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 61  SGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|289496488|gb|ADC98284.1| recombination protein RecA [Vibrio sp. 14E12]
 gi|289496518|gb|ADC98299.1| recombination protein RecA [Vibrio sp. 14G07]
          Length = 130

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 88/129 (68%), Positives = 112/129 (86%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSG
Sbjct: 2   LELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSG 61

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           AVD++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+R
Sbjct: 62  AVDVMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIR 121

Query: 205 MKIGVMFGS 213
           MKIGVMFG+
Sbjct: 122 MKIGVMFGN 130


>gi|180050849|gb|ACB87038.1| RecA [Bacteriovorax sp. PS91S]
          Length = 118

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 91/115 (79%), Positives = 103/115 (89%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           V+S+G LGLD+ALG+GG PKGRI+EIYGPESSGKTTL LH  AQ QK GGT AFVDAEHA
Sbjct: 4   VISTGCLGLDLALGVGGIPKGRIIEIYGPESSGKTTLTLHIAAQCQKQGGTVAFVDAEHA 63

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           LD+ YA KLGVD+ N LISQPD+GEQALEITDMLVRSGAVD++++DSVAALTPRA
Sbjct: 64  LDTTYAAKLGVDIPNTLISQPDSGEQALEITDMLVRSGAVDLLIVDSVAALTPRA 118


>gi|180050845|gb|ACB87036.1| RecA [Bacteriovorax sp. PS93S]
          Length = 117

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 91/115 (79%), Positives = 103/115 (89%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           V+S+G LGLD+ALG+GG PKGRI+EIYGPESSGKTTL LH  AQ QK GGT AFVDAEHA
Sbjct: 3   VISTGCLGLDLALGVGGIPKGRIIEIYGPESSGKTTLTLHIAAQCQKQGGTVAFVDAEHA 62

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           LD+ YA KLGVD+ N LISQPD+GEQALEITDMLVRSGAVD++++DSVAALTPRA
Sbjct: 63  LDTTYAAKLGVDIPNTLISQPDSGEQALEITDMLVRSGAVDLLIVDSVAALTPRA 117


>gi|289496398|gb|ADC98239.1| recombination protein RecA [Vibrio sp. 14A08]
          Length = 130

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 88/129 (68%), Positives = 112/129 (86%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSG
Sbjct: 2   LELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSG 61

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           AVD++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+R
Sbjct: 62  AVDVMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIR 121

Query: 205 MKIGVMFGS 213
           MKIGVMFG+
Sbjct: 122 MKIGVMFGN 130


>gi|30959138|gb|AAO73328.1| recombinase [Helicobacter pylori]
 gi|30959140|gb|AAO73329.1| recombinase [Helicobacter pylori]
          Length = 125

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 87/124 (70%), Positives = 109/124 (87%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEH
Sbjct: 1   DAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA++LGVD +NLL+SQP TGE+ALEI + +  SG +D++V+DSVAALTP+AEI+G
Sbjct: 61  ALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITTSGGIDLVVVDSVAALTPKAEIDG 120

Query: 166 DMGE 169
           DMG+
Sbjct: 121 DMGD 124


>gi|42540763|gb|AAS19282.1| RecA [uncultured delta proteobacterium]
          Length = 138

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 92/134 (68%), Positives = 113/134 (84%)

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           G    GKTTLALH IA  Q+TGG   FVDAEHALD  YAR+LG+  ++LLISQPDTGEQA
Sbjct: 5   GRSRRGKTTLALHIIAXXQRTGGIAGFVDAEHALDLAYARRLGIATEDLLISQPDTGEQA 64

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI +MLVRSGA+D++V+DSVAAL P+AEIEG+MG++  G+QARLMSQALRKLT +IS+S
Sbjct: 65  LEIAEMLVRSGALDVLVVDSVAALVPKAEIEGEMGDAHMGLQARLMSQALRKLTGTISKS 124

Query: 194 KCILVFINQMRMKI 207
           +  ++FINQ+RMKI
Sbjct: 125 RTAVIFINQIRMKI 138


>gi|289496204|gb|ADC98142.1| recombination protein RecA [Vibrio sp. 12F04]
          Length = 131

 Score =  192 bits (488), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 88/131 (67%), Positives = 111/131 (84%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  I+ +Q+ G TCAF+DAEHALD +YAR+LGV +  LL+SQPDTGEQALEI D L R
Sbjct: 1   LTLELISAAQREGKTCAFIDAEHALDPVYARRLGVKIDELLVSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+  FINQ
Sbjct: 61  SGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCFFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|42540769|gb|AAS19285.1| RecA [uncultured delta proteobacterium]
          Length = 138

 Score =  192 bits (488), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 93/134 (69%), Positives = 111/134 (82%)

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           G    GKTTLALH +A++QK G   AFVDAEHALD  YARKLGV   +LL+SQPDTGEQA
Sbjct: 5   GRSRRGKTTLALHIVAEAQKLGSIAAFVDAEHALDIGYARKLGVKTDDLLVSQPDTGEQA 64

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI + LVRSGA+D++V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  IS+S
Sbjct: 65  LEIAETLVRSGAIDVLVVDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLTGIISKS 124

Query: 194 KCILVFINQMRMKI 207
            C ++FINQ+RMKI
Sbjct: 125 NCCVIFINQIRMKI 138


>gi|2343256|gb|AAB67717.1| RecA [Bacteroides fragilis]
          Length = 129

 Score =  192 bits (488), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 89/129 (68%), Positives = 109/129 (84%)

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD GEQALEI +
Sbjct: 1   GKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLFISQPDNGEQALEIAE 60

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            L+RS A+DIIV+DSVAALTP+AEIEGDMG++  G+QARLMSQALRKLTS++S+++   +
Sbjct: 61  QLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTSAVSKTRTTCI 120

Query: 199 FINQMRMKI 207
           FINQ+R KI
Sbjct: 121 FINQLREKI 129


>gi|2343258|gb|AAB67718.1| RecA [Bacteroides uniformis]
          Length = 129

 Score =  192 bits (488), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 89/129 (68%), Positives = 110/129 (85%)

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NLLISQPD GEQALEI +
Sbjct: 1   GKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLLISQPDNGEQALEIAE 60

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            L+RS A+DIIV+DSVAALTP+AEIEGDMG++  G+QARLMSQALRKLT+++S+++   +
Sbjct: 61  QLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTAAVSKTRTTCI 120

Query: 199 FINQMRMKI 207
           FINQ+R KI
Sbjct: 121 FINQLREKI 129


>gi|226088415|dbj|BAH36960.1| recombinase A [Lactobacillus otakiensis]
          Length = 133

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 90/133 (67%), Positives = 115/133 (86%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGEQ L+I
Sbjct: 1   SSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLQI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LV SGA+DI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +IS++K I
Sbjct: 61  TDALVTSGAIDIVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISKTKTI 120

Query: 197 LVFINQMRMKIGV 209
            +FINQ+R K+GV
Sbjct: 121 AIFINQIREKVGV 133


>gi|42540765|gb|AAS19283.1| RecA [uncultured delta proteobacterium]
          Length = 146

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 94/134 (70%), Positives = 111/134 (82%)

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           G    GKTTLALH +A++ KTGG  AFVDAEHALD  YARKLGV   +LL+SQPDTGEQA
Sbjct: 13  GRSRRGKTTLALHIVAEAMKTGGIAAFVDAEHALDIGYARKLGVKTDDLLVSQPDTGEQA 72

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI + LVRSGA+D++V+DSVAAL  +AEIEGDMG+S  G+QARLMSQALRKLT  IS+S
Sbjct: 73  LEIAETLVRSGAIDVLVVDSVAALVCKAEIEGDMGDSHMGLQARLMSQALRKLTGIISKS 132

Query: 194 KCILVFINQMRMKI 207
            C ++FINQ+RMKI
Sbjct: 133 NCCVIFINQIRMKI 146


>gi|37956371|gb|AAP15360.1| RecA [Geobacter grbiciae]
          Length = 133

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 96/131 (73%), Positives = 118/131 (90%)

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  IS+S C ++FINQ
Sbjct: 3   SGAVDVLVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGIISKSNCCVIFINQ 62

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFGSPETTTGGNALKFY+SVRLDIR++ ++K  D++ G++T+VKVVKNK+A P
Sbjct: 63  IRMKIGVMFGSPETTTGGNALKFYASVRLDIRKIATLKQGDAVVGSRTKVKVVKNKVAPP 122

Query: 263 FKQVEFDIMYG 273
           FK+VEFDI YG
Sbjct: 123 FKEVEFDIHYG 133


>gi|180050843|gb|ACB87035.1| RecA [Bacteriovorax sp. PS12B]
          Length = 115

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 89/114 (78%), Positives = 102/114 (89%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           V+S+G LGLD+ALG+GG PKGRI+EIYGPESSGKTTL LH  AQ QK GGT AFVDAEHA
Sbjct: 2   VISTGCLGLDLALGVGGIPKGRIIEIYGPESSGKTTLTLHIAAQCQKQGGTVAFVDAEHA 61

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           LD+ YA KLGVD+ N LISQPD+GEQALEITDMLVR+GAVD++++DSVAALTPR
Sbjct: 62  LDTTYAAKLGVDIPNTLISQPDSGEQALEITDMLVRTGAVDLLIVDSVAALTPR 115


>gi|159148718|dbj|BAF92424.1| recombination protein RecA [Microcystis aeruginosa NIES-44]
 gi|159148720|dbj|BAF92425.1| recombination protein RecA [Microcystis aeruginosa NIES-87]
 gi|159148722|dbj|BAF92426.1| recombination protein RecA [Microcystis aeruginosa NIES-88]
 gi|159148726|dbj|BAF92428.1| recombination protein RecA [Microcystis aeruginosa NIES-90]
 gi|159148728|dbj|BAF92429.1| recombination protein RecA [Microcystis aeruginosa NIES-98]
 gi|159148730|dbj|BAF92430.1| recombination protein RecA [Microcystis aeruginosa NIES-99]
 gi|159148732|dbj|BAF92431.1| recombination protein RecA [Microcystis aeruginosa NIES-100]
 gi|159148734|dbj|BAF92432.1| recombination protein RecA [Microcystis aeruginosa NIES-101]
 gi|159148736|dbj|BAF92433.1| recombination protein RecA [Microcystis viridis NIES-102]
 gi|159148740|dbj|BAF92435.1| recombination protein RecA [Microcystis wesenbergii NIES-105]
 gi|159148742|dbj|BAF92436.1| recombination protein RecA [Microcystis wesenbergii NIES-107]
 gi|159148744|dbj|BAF92437.1| recombination protein RecA [Microcystis wesenbergii NIES-108]
 gi|159148746|dbj|BAF92438.1| recombination protein RecA [Microcystis wesenbergii NIES-109]
 gi|159148748|dbj|BAF92439.1| recombination protein RecA [Microcystis wesenbergii NIES-112]
 gi|159148750|dbj|BAF92440.1| recombination protein RecA [Microcystis wesenbergii NIES-604]
 gi|159148752|dbj|BAF92441.1| recombination protein RecA [Microcystis aeruginosa NIES-843]
 gi|159148754|dbj|BAF92442.1| recombination protein RecA [Microcystis viridis CL4]
 gi|159148756|dbj|BAF92443.1| recombination protein RecA [Microcystis aeruginosa MCS3]
 gi|159148758|dbj|BAF92444.1| recombination protein RecA [Microcystis aeruginosa PCC 7941]
 gi|159148760|dbj|BAF92445.1| recombination protein RecA [Microcystis novacekii TL2]
 gi|159148762|dbj|BAF92446.1| recombination protein RecA [Microcystis novacekii T20-3]
 gi|159148764|dbj|BAF92447.1| recombination protein RecA [Microcystis aeruginosa TAC15]
 gi|159148766|dbj|BAF92448.1| recombination protein RecA [Microcystis aeruginosa TAC19]
 gi|159148768|dbj|BAF92449.1| recombination protein RecA [Microcystis wesenbergii TAC38]
 gi|159148770|dbj|BAF92450.1| recombination protein RecA [Microcystis novacekii TAC65]
 gi|159148772|dbj|BAF92451.1| recombination protein RecA [Microcystis aeruginosa TAC86]
 gi|159148774|dbj|BAF92452.1| recombination protein RecA [Microcystis aeruginosa TAC97]
 gi|159148776|dbj|BAF92453.1| recombination protein RecA [Microcystis aeruginosa TAC114]
 gi|159148778|dbj|BAF92454.1| recombination protein RecA [Microcystis ichthyoblabe TAC125]
 gi|159148780|dbj|BAF92455.1| recombination protein RecA [Microcystis aeruginosa TAC350]
 gi|159148782|dbj|BAF92456.1| recombination protein RecA [Microcystis aeruginosa TAC364]
 gi|159148784|dbj|BAF92457.1| recombination protein RecA [Microcystis aeruginosa TAC4]
 gi|159148786|dbj|BAF92458.1| recombination protein RecA [Microcystis aeruginosa TAC67]
 gi|159148788|dbj|BAF92459.1| recombination protein RecA [Microcystis aeruginosa TAC69]
 gi|159148790|dbj|BAF92460.1| recombination protein RecA [Microcystis aeruginosa TAC76]
 gi|159148792|dbj|BAF92461.1| recombination protein RecA [Microcystis aeruginosa TAC110]
 gi|159148794|dbj|BAF92462.1| recombination protein RecA [Microcystis aeruginosa TAC96]
 gi|159148796|dbj|BAF92463.1| recombination protein RecA [Microcystis aeruginosa TAC115]
 gi|159148800|dbj|BAF92465.1| recombination protein RecA [Microcystis aeruginosa TAC128]
 gi|159148802|dbj|BAF92466.1| recombination protein RecA [Microcystis aeruginosa TAC129]
 gi|159148804|dbj|BAF92467.1| recombination protein RecA [Microcystis ichthyoblabe TAC136]
 gi|159148806|dbj|BAF92468.1| recombination protein RecA [Microcystis ichthyoblabe TAC146]
 gi|159148812|dbj|BAF92471.1| recombination protein RecA [Microcystis aeruginosa TAC159]
 gi|159148814|dbj|BAF92472.1| recombination protein RecA [Microcystis aeruginosa TAC178]
 gi|159148816|dbj|BAF92473.1| recombination protein RecA [Microcystis aeruginosa TAC198]
 gi|159148818|dbj|BAF92474.1| recombination protein RecA [Microcystis aeruginosa TAC134]
 gi|159148820|dbj|BAF92475.1| recombination protein RecA [Microcystis aeruginosa TAC135]
 gi|159148822|dbj|BAF92476.1| recombination protein RecA [Microcystis aeruginosa TAC396]
 gi|159148824|dbj|BAF92477.1| recombination protein RecA [Microcystis aeruginosa NIES-904]
 gi|159148826|dbj|BAF92478.1| recombination protein RecA [Microcystis aeruginosa TAC165]
 gi|159148828|dbj|BAF92479.1| recombination protein RecA [Microcystis aeruginosa TAC169]
 gi|159148830|dbj|BAF92480.1| recombination protein RecA [Microcystis aeruginosa TAC170]
 gi|159148832|dbj|BAF92481.1| recombination protein RecA [Microcystis aeruginosa TAC171]
 gi|159148834|dbj|BAF92482.1| recombination protein RecA [Microcystis aeruginosa NIES-901]
 gi|159148836|dbj|BAF92483.1| recombination protein RecA [Microcystis aeruginosa NIES-298]
 gi|159148838|dbj|BAF92484.1| recombination protein RecA [Microcystis aeruginosa NIES-299]
 gi|159148840|dbj|BAF92485.1| recombination protein RecA [Microcystis aeruginosa NIES-478]
 gi|159148842|dbj|BAF92486.1| recombination protein RecA [Microcystis aeruginosa TAC74]
 gi|159148844|dbj|BAF92487.1| recombination protein RecA [Microcystis novacekii TAC75]
 gi|159148846|dbj|BAF92488.1| recombination protein RecA [Microcystis aeruginosa TAC95]
 gi|159148848|dbj|BAF92489.1| recombination protein RecA [Microcystis aeruginosa TAC122]
 gi|159148850|dbj|BAF92490.1| recombination protein RecA [Microcystis aeruginosa TAC124]
 gi|159148852|dbj|BAF92491.1| recombination protein RecA [Microcystis aeruginosa TAC355]
 gi|159148854|dbj|BAF92492.1| recombination protein RecA [Microcystis aeruginosa TAC356]
 gi|159148856|dbj|BAF92493.1| recombination protein RecA [Microcystis aeruginosa TAC357]
 gi|159148858|dbj|BAF92494.1| recombination protein RecA [Microcystis aeruginosa TAC358]
 gi|159148860|dbj|BAF92495.1| recombination protein RecA [Microcystis aeruginosa TAC361]
 gi|159148862|dbj|BAF92496.1| recombination protein RecA [Microcystis aeruginosa TAC151]
 gi|159148864|dbj|BAF92497.1| recombination protein RecA [Microcystis aeruginosa TAC156]
 gi|159148866|dbj|BAF92498.1| recombination protein RecA [Microcystis aeruginosa TAC154]
 gi|159148868|dbj|BAF92499.1| recombination protein RecA [Microcystis aeruginosa TAC157]
 gi|159148870|dbj|BAF92500.1| recombination protein RecA [Microcystis aeruginosa NIES-91]
 gi|159148872|dbj|BAF92501.1| recombination protein RecA [Microcystis aeruginosa TAC374]
 gi|159148874|dbj|BAF92502.1| recombination protein RecA [Microcystis aeruginosa TAC383]
 gi|240119702|dbj|BAH79393.1| recombination protein RecA [Microcystis aeruginosa KA3b]
 gi|240119716|dbj|BAH79400.1| recombination protein RecA [Microcystis aeruginosa KA4]
 gi|240119730|dbj|BAH79407.1| recombination protein RecA [Microcystis aeruginosa KA6]
 gi|240119744|dbj|BAH79414.1| recombination protein RecA [Microcystis aeruginosa KS1]
 gi|240119772|dbj|BAH79428.1| recombination protein RecA [Microcystis aeruginosa Sw5]
 gi|240119786|dbj|BAH79435.1| recombination protein RecA [Microcystis aeruginosa Ks05TA51]
 gi|240119800|dbj|BAH79442.1| recombination protein RecA [Microcystis aeruginosa Ks05TA62]
 gi|240119814|dbj|BAH79449.1| recombination protein RecA [Microcystis aeruginosa Ki05TA02]
 gi|240119828|dbj|BAH79456.1| recombination protein RecA [Microcystis aeruginosa Ki05TA07]
 gi|240119842|dbj|BAH79463.1| recombination protein RecA [Microcystis aeruginosa Ks05IS02]
 gi|240119856|dbj|BAH79470.1| recombination protein RecA [Microcystis aeruginosa Ks05IS11]
 gi|240119870|dbj|BAH79477.1| recombination protein RecA [Microcystis aeruginosa Ks05YA11]
 gi|240119884|dbj|BAH79484.1| recombination protein RecA [Microcystis aeruginosa Tn05AK01]
 gi|240119898|dbj|BAH79491.1| recombination protein RecA [Microcystis aeruginosa Tn05AK02]
 gi|240119912|dbj|BAH79498.1| recombination protein RecA [Microcystis aeruginosa Tn05AK03]
 gi|240119926|dbj|BAH79505.1| recombination protein RecA [Microcystis aeruginosa Tn05AK05]
 gi|240119940|dbj|BAH79512.1| recombination protein RecA [Microcystis aeruginosa In05Fu04]
 gi|240119954|dbj|BAH79519.1| recombination protein RecA [Microcystis aeruginosa Ia05Yo03]
 gi|240119968|dbj|BAH79526.1| recombination protein RecA [Microcystis aeruginosa Ia05Yo05]
 gi|240119982|dbj|BAH79533.1| recombination protein RecA [Microcystis aeruginosa Sn05Mb05]
 gi|240119996|dbj|BAH79540.1| recombination protein RecA [Microcystis aeruginosa LNN-s1]
 gi|240120010|dbj|BAH79547.1| recombination protein RecA [Microcystis aeruginosa Ks05IS19]
 gi|326487061|dbj|BAJ84730.1| recombination protein RecA [Microcystis aeruginosa KA5]
 gi|326487063|dbj|BAJ84731.1| recombination protein RecA [Microcystis aeruginosa Sn05Mb06]
 gi|326487067|dbj|BAJ84733.1| recombination protein RecA [Microcystis aeruginosa Thvi7]
 gi|326487071|dbj|BAJ84735.1| recombination protein RecA [Microcystis aeruginosa CTS3-5]
 gi|326487073|dbj|BAJ84736.1| recombination protein RecA [Microcystis aeruginosa CTS3-8]
 gi|326487087|dbj|BAJ84743.1| recombination protein RecA [Microcystis aeruginosa NIES-1174]
 gi|326487089|dbj|BAJ84744.1| recombination protein RecA [Microcystis aeruginosa NIES-1177]
 gi|326487091|dbj|BAJ84745.1| recombination protein RecA [Microcystis aeruginosa NIES-1181]
 gi|326487093|dbj|BAJ84746.1| recombination protein RecA [Microcystis aeruginosa Bv07BH03]
 gi|326487095|dbj|BAJ84747.1| recombination protein RecA [Microcystis aeruginosa Rs08SH05]
 gi|326487097|dbj|BAJ84748.1| recombination protein RecA [Microcystis aeruginosa Rw08NA01]
 gi|326487099|dbj|BAJ84749.1| recombination protein RecA [Microcystis aeruginosa Ki08TS01]
 gi|326487101|dbj|BAJ84750.1| recombination protein RecA [Microcystis aeruginosa Ks08TS08]
 gi|326487105|dbj|BAJ84752.1| recombination protein RecA [Microcystis aeruginosa Aw08Gb01]
          Length = 148

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 87/130 (66%), Positives = 111/130 (85%)

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           Y+  LGVD+ NLL++QPDTGE ALEI D LVRS AVDI+VIDSVAAL PRAEIEG+MG++
Sbjct: 3   YSEDLGVDINNLLVAQPDTGEAALEIVDQLVRSSAVDIVVIDSVAALVPRAEIEGEMGDN 62

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
             G+QARLMS+ALRK+  +I +S C+++F+NQ+R KIGV +G+PE TTGG ALKFY+SVR
Sbjct: 63  QVGLQARLMSKALRKIAGNIGKSGCVVIFLNQLRQKIGVTYGNPEVTTGGTALKFYASVR 122

Query: 231 LDIRRVGSIK 240
           LDIRR+ ++K
Sbjct: 123 LDIRRIQTLK 132


>gi|1480909|gb|AAB81399.1| RecA [Bacteroides thetaiotaomicron]
          Length = 129

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 89/129 (68%), Positives = 108/129 (83%)

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD GEQALEI +
Sbjct: 1   GKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDNGEQALEIAE 60

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            L+RS A+DIIVIDSVAALTP+AEIEGDMG++  G+QARLMSQALRKLT ++S+++   +
Sbjct: 61  QLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTGTVSKTRTTCI 120

Query: 199 FINQMRMKI 207
           FINQ+R KI
Sbjct: 121 FINQLREKI 129


>gi|180050855|gb|ACB87041.1| RecA [Bacteriovorax sp. JS8]
          Length = 117

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 89/115 (77%), Positives = 102/115 (88%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           V+ +G LGLD+ALG+GG PKGRI+EIYGPESSGKTTL LH  AQ Q+ GGT AFVDAEHA
Sbjct: 3   VIPTGCLGLDLALGVGGIPKGRIIEIYGPESSGKTTLTLHIAAQCQQQGGTVAFVDAEHA 62

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           LD+ YA KLGVD+ N LISQPD+GEQALEITDMLVRSGAVD++++DSVAALTPRA
Sbjct: 63  LDTSYASKLGVDIPNTLISQPDSGEQALEITDMLVRSGAVDLLIVDSVAALTPRA 117


>gi|68635392|emb|CAF21753.1| recombinase A [Lactobacillus casei]
          Length = 158

 Score =  189 bits (481), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 95/197 (48%), Positives = 128/197 (64%), Gaps = 42/197 (21%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +  +SSGSL +D  LG+GG P+GRIVE+YGPESSG+TT+ALH +A  Q+ GGT A++DAE
Sbjct: 2   VSAISSGSLAIDEVLGVGGLPRGRIVEMYGPESSGETTVALHAVAMVQQHGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA                                           AL P+AEI+
Sbjct: 62  NAMDPKYA------------------------------------------TALVPQAEID 79

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG++  G+QARLMSQALRKL+ +IS++K I VFINQ+R K+G++FG+PE T GG ALK
Sbjct: 80  GDMGDAHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGIVFGNPEITPGGRALK 139

Query: 225 FYSSVRLDIRRVGSIKD 241
           FY++VRL+IRR   +K+
Sbjct: 140 FYATVRLEIRRSEQVKN 156


>gi|159148724|dbj|BAF92427.1| recombination protein RecA [Microcystis aeruginosa NIES-89]
 gi|159148738|dbj|BAF92434.1| recombination protein RecA [Microcystis wesenbergii NIES-104]
 gi|159148798|dbj|BAF92464.1| recombination protein RecA [Microcystis aeruginosa TAC126]
 gi|159148808|dbj|BAF92469.1| recombination protein RecA [Microcystis aeruginosa TAC153]
 gi|159148810|dbj|BAF92470.1| recombination protein RecA [Microcystis aeruginosa TAC352]
 gi|240119758|dbj|BAH79421.1| recombination protein RecA [Microcystis aeruginosa SA2]
 gi|326487065|dbj|BAJ84732.1| recombination protein RecA [Microcystis aeruginosa Ss05Mb06]
 gi|326487069|dbj|BAJ84734.1| recombination protein RecA [Microcystis aeruginosa Thvi8]
 gi|326487075|dbj|BAJ84737.1| recombination protein RecA [Microcystis aeruginosa Ks07TS93]
 gi|326487077|dbj|BAJ84738.1| recombination protein RecA [Microcystis aeruginosa Ks07TS137]
 gi|326487079|dbj|BAJ84739.1| recombination protein RecA [Microcystis aeruginosa Ks07TS139]
 gi|326487081|dbj|BAJ84740.1| recombination protein RecA [Microcystis aeruginosa Ks07TS141]
 gi|326487083|dbj|BAJ84741.1| recombination protein RecA [Microcystis aeruginosa Ks07TS159]
 gi|326487085|dbj|BAJ84742.1| recombination protein RecA [Microcystis aeruginosa Kn07TS121]
 gi|326487103|dbj|BAJ84751.1| recombination protein RecA [Microcystis aeruginosa Ks08YA11]
 gi|326487107|dbj|BAJ84753.1| recombination protein RecA [Microcystis aeruginosa An08Hj03]
 gi|326487109|dbj|BAJ84754.1| recombination protein RecA [Microcystis aeruginosa As08Fu06]
          Length = 148

 Score =  189 bits (480), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 87/130 (66%), Positives = 111/130 (85%)

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           Y+  LGVD+ NLL++QPDTGE ALEI D LVRS AVDI+VIDSVAAL PRAEIEG+MG++
Sbjct: 3   YSDVLGVDINNLLVAQPDTGEAALEIVDQLVRSSAVDIVVIDSVAALVPRAEIEGEMGDN 62

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
             G+QARLMS+ALRK+  +I +S C+++F+NQ+R KIGV +G+PE TTGG ALKFY+SVR
Sbjct: 63  QVGLQARLMSKALRKIAGNIGKSGCVVIFLNQLRQKIGVTYGNPEVTTGGTALKFYASVR 122

Query: 231 LDIRRVGSIK 240
           LDIRR+ ++K
Sbjct: 123 LDIRRIQTLK 132


>gi|180050857|gb|ACB87042.1| RecA [Bacteriovorax sp. JS9]
          Length = 120

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 88/117 (75%), Positives = 102/117 (87%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  +S+  LGLD+ALG+GG PKGRI+EIYGPESSGKTTL LH  A+ QK GGT AF+DAE
Sbjct: 4   IPAISTSCLGLDLALGVGGVPKGRIIEIYGPESSGKTTLTLHIAAECQKAGGTVAFIDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           HALD+ YA KLGVD+ N LISQPD+GEQALEITDMLVRSGAVD++++DSVAALTPRA
Sbjct: 64  HALDTAYASKLGVDIPNTLISQPDSGEQALEITDMLVRSGAVDLLIVDSVAALTPRA 120


>gi|293629582|gb|ADE58558.1| recombinase A [Blastobacter aggregatus]
          Length = 134

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 88/107 (82%), Positives = 98/107 (91%)

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           G GG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL
Sbjct: 28  GCGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDL 87

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           +NLLISQPDTGEQALEITD LVRSG +D++V+ SVAALTPRAEIEG+
Sbjct: 88  QNLLISQPDTGEQALEITDTLVRSGXIDVLVVXSVAALTPRAEIEGE 134


>gi|240255480|ref|NP_189781.4| ATP binding / DNA binding / DNA-dependent ATPase/
           nucleoside-triphosphatase/ nucleotide binding
           [Arabidopsis thaliana]
          Length = 226

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 103/196 (52%), Positives = 142/196 (72%), Gaps = 18/196 (9%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           + V S+GS  LD+ALG+GG PKGR+VEIYGPE+SGKT LALH ++               
Sbjct: 12  VPVFSTGSFALDVALGVGGLPKGRLVEIYGPEASGKTALALHMLSM-------------- 57

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
             L    A+ +GV+ +NLL+SQPD G+QAL + D L++SG+VD+IV+DSVAAL P+ E++
Sbjct: 58  -LLIRSLAKAIGVNTENLLLSQPDCGKQALSLVDTLIQSGSVDVIVVDSVAALVPKGELD 116

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++   +QARLMSQALRK + S+  S+ +L+FINQ+R + G   G  E T+GGNALK
Sbjct: 117 GEMGDAHMAIQARLMSQALRKFSHSLLLSQTLLIFINQVRERFG---GPTEVTSGGNALK 173

Query: 225 FYSSVRLDIRRVGSIK 240
           FY+ +RLDI+R+G IK
Sbjct: 174 FYAPMRLDIKRIGLIK 189


>gi|42540767|gb|AAS19284.1| RecA [uncultured delta proteobacterium]
          Length = 138

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 91/134 (67%), Positives = 110/134 (82%)

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           G    GKTTLALH +A++QK G   AFVDAEHALD  YARKLGV   +LL+SQPDTGEQA
Sbjct: 5   GRSRRGKTTLALHIVAEAQKLGSIAAFVDAEHALDIGYARKLGVKTDDLLVSQPDTGEQA 64

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI + LVRSGA+D++V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT   ++S
Sbjct: 65  LEIAETLVRSGAIDVLVVDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLTGITTKS 124

Query: 194 KCILVFINQMRMKI 207
            C ++FINQ+RMKI
Sbjct: 125 NCCVIFINQIRMKI 138


>gi|180050873|gb|ACB87050.1| RecA [Bacteriovorax sp. T8]
          Length = 169

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 102/149 (68%), Positives = 123/149 (82%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
            G+IM+L +  +  E I  +S+G LGLD+ LGIGG PKGRI+EIYGPESSGKTTL LH  
Sbjct: 13  NGSIMKLDADSNTPEKIPAISTGCLGLDLGLGIGGVPKGRIIEIYGPESSGKTTLTLHIA 72

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GGT AFVDAEHALD++YA  LGVD+ N LISQPD+GEQALEI DMLVRSGAVD+
Sbjct: 73  AECQKEGGTVAFVDAEHALDTVYASNLGVDIPNTLISQPDSGEQALEIADMLVRSGAVDL 132

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           +++DSVAALTPRAE+EGDMG++  G+ AR
Sbjct: 133 LIVDSVAALTPRAELEGDMGDTHLGLHAR 161


>gi|258677604|gb|ACV87526.1| RecA [uncultured Burkholderia sp.]
          Length = 130

 Score =  189 bits (479), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 91/131 (69%), Positives = 113/131 (86%), Gaps = 1/131 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG++M+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSVMRLGA-GEVIEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LVR
Sbjct: 60  LTLQVIAEMQKIGGTAAFIDAEHALDIQYASKLGVNVNDLLVSQPDTGEQALEIADALVR 119

Query: 143 SGAVDIIVIDS 153
           SG++D+IVIDS
Sbjct: 120 SGSIDMIVIDS 130


>gi|226069496|dbj|BAH36955.1| recombinase A [Lactobacillus diolivorans]
          Length = 129

 Score =  188 bits (478), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 89/129 (68%), Positives = 112/129 (86%)

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGEQ L+
Sbjct: 1   ESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLQ 60

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           ITD LV SGAVDI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +IS++K 
Sbjct: 61  ITDALVTSGAVDIVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISKTKT 120

Query: 196 ILVFINQMR 204
           I +FINQ+R
Sbjct: 121 IAIFINQIR 129


>gi|71089164|gb|AAZ23660.1| RecA [uncultured Burkholderia sp.]
          Length = 129

 Score =  188 bits (478), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 92/130 (70%), Positives = 112/130 (86%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA+KLGV+++ LLISQPDTGEQALEI D LVRS
Sbjct: 60  TLQVIAEMQKVGGTAAFIDAEHALDVQYAQKLGVNIQELLISQPDTGEQALEIADALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|72161207|ref|YP_288864.1| DNA recombination protein RecAprecursor [Thermobifida fusca YX]
 gi|71914939|gb|AAZ54841.1| DNA recombination protein RecA precursor [Thermobifida fusca YX]
          Length = 1177

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 90/135 (66%), Positives = 113/135 (83%)

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           S  TT+ALH +A +Q+ GG  AF+DAEHALD  YA K+GV++ +LL+SQPDTGEQALEI 
Sbjct: 515 SHNTTVALHAVANAQRAGGIAAFIDAEHALDPSYAEKIGVNIDDLLLSQPDTGEQALEIV 574

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           DMLVRSGA+ IIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+  +++++K   
Sbjct: 575 DMLVRSGAISIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKIAGALNQTKTTA 634

Query: 198 VFINQMRMKIGVMFG 212
           +FINQ+R K+GVMFG
Sbjct: 635 IFINQLREKVGVMFG 649



 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 77/131 (58%), Positives = 103/131 (78%), Gaps = 1/131 (0%)

Query: 208  GVMF-GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
            GVM   SPETT+GG ALKFY+SVR+D+RR+ ++KD     GN+TRVKVVKNK+A PFKQ 
Sbjct: 1001 GVMVHNSPETTSGGRALKFYASVRMDVRRIETLKDGTEAVGNRTRVKVVKNKLAPPFKQA 1060

Query: 267  EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            EFDI+YG GIS  G L+DLGV+  IV KSGAW++++G +LGQG+EN++ FLR N ++A+ 
Sbjct: 1061 EFDILYGVGISREGGLLDLGVEHGIVRKSGAWYTYEGTQLGQGKENARNFLRANPDMADE 1120

Query: 327  IESLLRQNAGL 337
            IE  ++Q  G+
Sbjct: 1121 IEKRIKQKLGI 1131



 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/74 (60%), Positives = 55/74 (74%), Gaps = 2/74 (2%)

Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
          D+ KALE AL+QI+R +GKG IM+LG        IE + +GS+ LD+ALGIGG P+GRIV
Sbjct: 28 DRDKALETALAQIERQFGKGTIMRLGDDNR--PPIESIPTGSISLDVALGIGGIPRGRIV 85

Query: 71 EIYGPESSGKTTLA 84
          EIYGPESSGK   A
Sbjct: 86 EIYGPESSGKCLTA 99


>gi|258677594|gb|ACV87522.1| RecA [uncultured Burkholderia sp.]
          Length = 130

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 92/131 (70%), Positives = 112/131 (85%), Gaps = 1/131 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDS 153
           SG++D+IVIDS
Sbjct: 120 SGSIDMIVIDS 130


>gi|258677584|gb|ACV87517.1| RecA [uncultured Burkholderia sp.]
 gi|258677586|gb|ACV87518.1| RecA [uncultured Burkholderia sp.]
          Length = 132

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 92/133 (69%), Positives = 113/133 (84%), Gaps = 1/133 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG++M+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LL+SQPDTGEQALEI D LVR
Sbjct: 60  LTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSELLVSQPDTGEQALEIADALVR 119

Query: 143 SGAVDIIVIDSVA 155
           SG++D+IVIDSVA
Sbjct: 120 SGSIDMIVIDSVA 132


>gi|180050815|gb|ACB87021.1| RecA [Bacteriovorax sp. MNZ2]
          Length = 120

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 85/119 (71%), Positives = 103/119 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +  +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ QK GGT AF+DAE
Sbjct: 2   VPSISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           HALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++DSVAALTPRAE+
Sbjct: 62  HALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIVDSVAALTPRAEL 120


>gi|226088421|dbj|BAH36963.1| recombinase A [Lactobacillus rapi]
 gi|226088429|dbj|BAH36967.1| recombinase A [Lactobacillus kisonensis]
 gi|226088439|dbj|BAH36972.1| recombinase A [Lactobacillus kisonensis]
 gi|226088441|dbj|BAH36973.1| recombinase A [Lactobacillus rapi]
          Length = 130

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 89/130 (68%), Positives = 112/130 (86%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGEQ L+I
Sbjct: 1   SSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLQI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LV SGAVDI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +IS++K I
Sbjct: 61  TDALVTSGAVDIVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISKTKTI 120

Query: 197 LVFINQMRMK 206
            +FINQ+R K
Sbjct: 121 AIFINQIREK 130


>gi|258677602|gb|ACV87525.1| RecA [uncultured Burkholderia sp.]
          Length = 130

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 94/131 (71%), Positives = 111/131 (84%), Gaps = 1/131 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDS 153
           SG+VD+IVIDS
Sbjct: 120 SGSVDMIVIDS 130


>gi|264665849|gb|ACY70988.1| recombinase A [Tissierella sp. LBN 299]
          Length = 120

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 86/120 (71%), Positives = 107/120 (89%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F++AEHALD  YA+KLGVD +NL++SQPDTGEQALEI + LVRSGAVDI+V+DSVAAL P
Sbjct: 1   FIEAEHALDPTYAKKLGVDTENLIVSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           +AEIEG+MG+S  G+QARLMSQALRKL+ SIS+S+ I +FINQ+R K+G+MFG+PETT G
Sbjct: 61  KAEIEGEMGDSHVGLQARLMSQALRKLSGSISKSQTIAIFINQLREKVGIMFGNPETTPG 120


>gi|258677588|gb|ACV87519.1| RecA [uncultured Burkholderia sp.]
 gi|258677592|gb|ACV87521.1| RecA [uncultured Burkholderia sp.]
 gi|258677596|gb|ACV87523.1| RecA [uncultured Burkholderia sp.]
          Length = 130

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 93/131 (70%), Positives = 111/131 (84%), Gaps = 1/131 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDS 153
           SG++D+IVIDS
Sbjct: 120 SGSIDMIVIDS 130


>gi|37956374|gb|AAP15361.1| RecA [Geothermobacter ehrlichii]
          Length = 165

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 99/154 (64%), Positives = 125/154 (81%), Gaps = 1/154 (0%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           S  KTTLALH ++++QK GG  A VDAEHALD  YAR+LGV   +LL+SQPDTGEQALEI
Sbjct: 12  SIAKTTLALHIVSEAQKKGGIAAXVDAEHALDIQYARQLGVKTDDLLVSQPDTGEQALEI 71

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           T+++VRSG + ++V+ SVAAL PRAE EG+ G+S  G+QARLMSQALRKLT++IS+S   
Sbjct: 72  TEVMVRSGXIXVLVVXSVAALVPRAEXEGEXGDSHXGLQARLMSQALRKLTATISKSNXC 131

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
           ++FIN +RMKIGVMFG+PETT+GGNA   +  VR
Sbjct: 132 VIFINXIRMKIGVMFGNPETTSGGNA-XIWQXVR 164


>gi|213389246|gb|ACJ45758.1| RecA [Burkholderia sp. SIB005]
          Length = 129

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 92/127 (72%), Positives = 109/127 (85%), Gaps = 1/127 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 4   FGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 62

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 63  VIAEPQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 122

Query: 147 DIIVIDS 153
           D+IVIDS
Sbjct: 123 DMIVIDS 129


>gi|71089172|gb|AAZ23664.1| RecA [uncultured Burkholderia sp.]
 gi|71089176|gb|AAZ23666.1| RecA [uncultured Burkholderia sp.]
          Length = 129

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 92/130 (70%), Positives = 112/130 (86%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA+KLGV+ ++LLISQPDTGEQALEI D LVRS
Sbjct: 60  TLQVIAEMQKLGGTAAFIDAEHALDVQYAQKLGVNAQDLLISQPDTGEQALEIADALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|258677598|gb|ACV87524.1| RecA [uncultured Burkholderia sp.]
          Length = 130

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 93/131 (70%), Positives = 112/131 (85%), Gaps = 1/131 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDS 153
           SG++D+IVIDS
Sbjct: 120 SGSIDMIVIDS 130


>gi|168838763|gb|ACA35049.1| nonfunctional truncated recombinase A [Mycobacterium bovis BCG str.
           ATCC 35740]
          Length = 139

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 86/135 (63%), Positives = 111/135 (82%), Gaps = 2/135 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI++ YGKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GR++
Sbjct: 6   DREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGA 145
           EQALEI DML+RSGA
Sbjct: 124 EQALEIADMLIRSGA 138


>gi|264665859|gb|ACY70993.1| recombinase A [Sporanaerobacter acetigenes]
          Length = 120

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 86/120 (71%), Positives = 107/120 (89%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F++AEHALD  YA++LGVD+ NL++SQPDTGEQALEI + LVRSGA+D+IVIDSVAAL P
Sbjct: 1   FIEAEHALDPSYAKRLGVDIDNLIVSQPDTGEQALEIAEALVRSGAIDVIVIDSVAALVP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           +AEIEG+MGES  G+QARLMSQALRKL  SI++S+ I++FINQ+R K+GVMFG+PETT G
Sbjct: 61  KAEIEGEMGESHVGLQARLMSQALRKLAGSINKSQAIVIFINQLREKVGVMFGNPETTPG 120


>gi|98991044|gb|ABF60546.1| RecA [Burkholderia tropica]
          Length = 129

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 93/130 (71%), Positives = 110/130 (84%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRLGD-GDAVENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|226088423|dbj|BAH36964.1| recombinase A [Lactobacillus sunkii]
 gi|226088425|dbj|BAH36965.1| recombinase A [Lactobacillus otakiensis]
 gi|226088427|dbj|BAH36966.1| recombinase A [Lactobacillus otakiensis]
 gi|226088431|dbj|BAH36968.1| recombinase A [Lactobacillus sunkii]
 gi|226088435|dbj|BAH36970.1| recombinase A [Lactobacillus sunkii]
 gi|226088437|dbj|BAH36971.1| recombinase A [Lactobacillus sunkii]
          Length = 130

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 88/130 (67%), Positives = 112/130 (86%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGEQ L+I
Sbjct: 1   SSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLQI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LV SGA+DI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +IS++K I
Sbjct: 61  TDALVTSGAIDIVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISKTKTI 120

Query: 197 LVFINQMRMK 206
            +FINQ+R K
Sbjct: 121 AIFINQIREK 130


>gi|213389266|gb|ACJ45768.1| RecA [Burkholderia sp. VSB003]
          Length = 129

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 93/127 (73%), Positives = 109/127 (85%), Gaps = 1/127 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 4   FGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 62

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+V
Sbjct: 63  VIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSV 122

Query: 147 DIIVIDS 153
           D+IVIDS
Sbjct: 123 DMIVIDS 129


>gi|71089170|gb|AAZ23663.1| RecA [uncultured Burkholderia sp.]
          Length = 128

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 92/127 (72%), Positives = 110/127 (86%), Gaps = 1/127 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 3   FGKGSIMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 61

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA+KLGV+ ++LLISQPDTGEQALEI D LVRSG++
Sbjct: 62  VIAEMQKLGGTAAFIDAEHALDVQYAQKLGVNAQDLLISQPDTGEQALEIADALVRSGSI 121

Query: 147 DIIVIDS 153
           D+IVIDS
Sbjct: 122 DMIVIDS 128


>gi|258677616|gb|ACV87532.1| RecA [uncultured Burkholderia sp.]
          Length = 130

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 94/131 (71%), Positives = 110/131 (83%), Gaps = 1/131 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGD-AEAKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAEMQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDS 153
           SG+VD+IVIDS
Sbjct: 120 SGSVDMIVIDS 130


>gi|213389254|gb|ACJ45762.1| RecA [Burkholderia sp. SIB013]
          Length = 129

 Score =  186 bits (472), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 92/127 (72%), Positives = 109/127 (85%), Gaps = 1/127 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 4   FGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 62

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 63  VIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 122

Query: 147 DIIVIDS 153
           D+IVIDS
Sbjct: 123 DMIVIDS 129


>gi|213389244|gb|ACJ45757.1| RecA [Burkholderia sp. SIB001]
          Length = 129

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 92/127 (72%), Positives = 108/127 (85%), Gaps = 1/127 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 4   FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 62

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 63  VIAEPQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 122

Query: 147 DIIVIDS 153
           D+IVIDS
Sbjct: 123 DMIVIDS 129


>gi|213389252|gb|ACJ45761.1| RecA [Burkholderia sp. SIB012]
 gi|213389256|gb|ACJ45763.1| RecA [Burkholderia sp. SIB014]
          Length = 129

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 92/130 (70%), Positives = 110/130 (84%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|312861993|gb|ADR10476.1| recombinase A [Tepidimicrobium ferriphilum]
          Length = 120

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 86/120 (71%), Positives = 107/120 (89%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F++AEHALD  YA+ LGVD++NL++SQPDTGEQALEI + LVRSGAVDIIVIDSVAAL P
Sbjct: 1   FIEAEHALDPNYAKNLGVDVENLIVSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           +AEIEG+MG+S  G+QARLMSQALRKL  +I++SK I++FINQ+R K+G+MFG+PETT G
Sbjct: 61  KAEIEGEMGDSHVGLQARLMSQALRKLAGAINKSKVIVIFINQLREKVGIMFGNPETTPG 120


>gi|71089120|gb|AAZ23638.1| RecA [uncultured Burkholderia sp.]
 gi|71089122|gb|AAZ23639.1| RecA [uncultured Burkholderia sp.]
 gi|71089126|gb|AAZ23641.1| RecA [uncultured Burkholderia sp.]
          Length = 129

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 90/130 (69%), Positives = 110/130 (84%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG++M+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  +A+ QK GGT AF+DAEHALD  YA KLGVD+  LL+SQPDTGEQALEI D LVRS
Sbjct: 60  TLQVVAEMQKLGGTAAFIDAEHALDIQYAAKLGVDVSELLVSQPDTGEQALEIADALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|226088417|dbj|BAH36961.1| recombinase A [Lactobacillus otakiensis]
          Length = 128

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 87/128 (67%), Positives = 111/128 (86%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGEQ L+I
Sbjct: 1   SSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLQI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LV SGA+DI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +IS++K I
Sbjct: 61  TDALVTSGAIDIVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISKTKTI 120

Query: 197 LVFINQMR 204
            +FINQ+R
Sbjct: 121 AIFINQIR 128


>gi|85701217|sp|Q3EAS6|RECA4_ARATH RecName: Full=Putative DNA repair protein recA homolog 4; AltName:
           Full=Recombinase A homolog 4
          Length = 229

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 97/199 (48%), Positives = 136/199 (68%), Gaps = 21/199 (10%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           + V S+GS  LD+ALG+GG PKGR+VEIYGPE+SGKT LALH ++               
Sbjct: 12  VPVFSTGSFALDVALGVGGLPKGRLVEIYGPEASGKTALALHMLSM-------------- 57

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG---AVDIIVIDSVAALTPRA 161
             L    A+ +GV+ +NLL+SQPD G+QAL + D L++SG    + +  +  VAAL P+ 
Sbjct: 58  -LLIRSLAKAIGVNTENLLLSQPDCGKQALSLVDTLIQSGSVDVIVVDSVSKVAALVPKG 116

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
           E++G+MG++   +QARLMSQALRK + S+  S+ +L+FINQ+R + G   G  E T+GGN
Sbjct: 117 ELDGEMGDAHMAIQARLMSQALRKFSHSLLLSQTLLIFINQVRERFG---GPTEVTSGGN 173

Query: 222 ALKFYSSVRLDIRRVGSIK 240
           ALKFY+ +RLDI+R+G IK
Sbjct: 174 ALKFYAPMRLDIKRIGLIK 192


>gi|264665839|gb|ACY70983.1| recombinase A [Tissierella sp. AIP 249.98]
 gi|264665843|gb|ACY70985.1| recombinase A [Tissierella sp. AIP 64.01]
 gi|264665847|gb|ACY70987.1| recombinase A [Tissierella sp. LBN 292]
 gi|264665851|gb|ACY70989.1| recombinase A [Tissierella sp. LBN 295]
          Length = 120

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 86/120 (71%), Positives = 106/120 (88%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F++AEHALD  YA+KLGVD++NL+ISQPDTGEQALEI + LVRSGA+DI+V+DSVAAL P
Sbjct: 1   FIEAEHALDPAYAKKLGVDIENLVISQPDTGEQALEIAEALVRSGAIDIVVVDSVAALVP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           +AEIEG+MG+S  G+QARLMSQALRKL  +I++S   +VFINQ+R K+GVMFGSPETT G
Sbjct: 61  KAEIEGEMGDSHIGLQARLMSQALRKLAGTINKSNSTVVFINQLREKVGVMFGSPETTPG 120


>gi|225631107|ref|ZP_03787832.1| recombinase A [Wolbachia endosymbiont of Muscidifurax uniraptor]
 gi|225591198|gb|EEH12355.1| recombinase A [Wolbachia endosymbiont of Muscidifurax uniraptor]
          Length = 153

 Score =  186 bits (471), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 83/128 (64%), Positives = 109/128 (85%)

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGV++G+PETTTGGNALKFY+SVRLDIR+VG IKDK++ITGN+TRVKVVKNK+A PF+
Sbjct: 1   MKIGVVYGNPETTTGGNALKFYTSVRLDIRKVGVIKDKENITGNETRVKVVKNKVAPPFR 60

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           + +FDIMY EGIS  GE+ID+G K  +++K+GA++S+   RLGQGREN K +L+ N E+A
Sbjct: 61  EAKFDIMYNEGISKLGEIIDMGAKLGVLEKAGAYYSYNNTRLGQGRENVKTYLKTNKEVA 120

Query: 325 ENIESLLR 332
             IE+ +R
Sbjct: 121 NEIETKIR 128


>gi|226088413|dbj|BAH36959.1| recombinase A [Lactobacillus parakefiri]
          Length = 128

 Score =  186 bits (471), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 87/128 (67%), Positives = 111/128 (86%)

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGEQ L+
Sbjct: 1   ESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLQ 60

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           ITD LV SGA+DI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +IS++K 
Sbjct: 61  ITDALVTSGAIDIVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISKTKT 120

Query: 196 ILVFINQM 203
           I +FINQ+
Sbjct: 121 IAIFINQI 128


>gi|56181897|gb|AAV83929.1| RecA [Burkholderia cepacia]
          Length = 140

 Score =  185 bits (470), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 98/139 (70%), Positives = 118/139 (84%), Gaps = 1/139 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAKEDIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDII 149
           EQALEITD LVRSG++D+I
Sbjct: 122 EQALEITDALVRSGSIDMI 140


>gi|258677612|gb|ACV87530.1| RecA [uncultured Burkholderia sp.]
          Length = 130

 Score =  185 bits (470), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 90/131 (68%), Positives = 112/131 (85%), Gaps = 1/131 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG++M+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +A+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LVR
Sbjct: 60  LTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVR 119

Query: 143 SGAVDIIVIDS 153
           SG++D+IVIDS
Sbjct: 120 SGSIDMIVIDS 130


>gi|71089168|gb|AAZ23662.1| RecA [uncultured Burkholderia sp.]
          Length = 128

 Score =  185 bits (470), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 91/129 (70%), Positives = 111/129 (86%), Gaps = 1/129 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA+KLGV+ ++LLISQPDTGEQALEI D LVRS
Sbjct: 60  TLQVIAEMQKLGGTAAFIDAEHALDVQYAQKLGVNAQDLLISQPDTGEQALEIADALVRS 119

Query: 144 GAVDIIVID 152
           G++D+IVID
Sbjct: 120 GSIDMIVID 128


>gi|117940181|gb|ABK58218.1| recombinase A [Burkholderia ubonensis]
 gi|213389262|gb|ACJ45766.1| RecA [Burkholderia sp. VSB017]
 gi|213389264|gb|ACJ45767.1| RecA [Burkholderia sp. SIB010]
          Length = 129

 Score =  185 bits (470), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 92/130 (70%), Positives = 110/130 (84%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|145386833|gb|ABP65278.1| recombinase A [Burkholderia vietnamiensis]
          Length = 128

 Score =  185 bits (470), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 92/127 (72%), Positives = 109/127 (85%), Gaps = 1/127 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 3   FGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 61

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 62  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 121

Query: 147 DIIVIDS 153
           D+IVIDS
Sbjct: 122 DMIVIDS 128


>gi|258677590|gb|ACV87520.1| RecA [uncultured Burkholderia sp.]
          Length = 130

 Score =  185 bits (470), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 90/131 (68%), Positives = 111/131 (84%), Gaps = 1/131 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG++M+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LL+SQPDTGEQALEI D LVR
Sbjct: 60  LTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNELLVSQPDTGEQALEIADALVR 119

Query: 143 SGAVDIIVIDS 153
           SG++D+IVIDS
Sbjct: 120 SGSIDMIVIDS 130


>gi|117940187|gb|ABK58221.1| recombinase A [Burkholderia ubonensis]
 gi|213389236|gb|ACJ45753.1| RecA [Burkholderia sp. ZM004]
          Length = 129

 Score =  185 bits (470), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 92/130 (70%), Positives = 110/130 (84%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|213389248|gb|ACJ45759.1| RecA [Burkholderia sp. SIB006]
 gi|213389250|gb|ACJ45760.1| RecA [Burkholderia sp. SIB011]
 gi|213389258|gb|ACJ45764.1| RecA [Burkholderia sp. VSB006]
          Length = 129

 Score =  185 bits (470), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 92/127 (72%), Positives = 108/127 (85%), Gaps = 1/127 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 4   FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 62

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 63  VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 122

Query: 147 DIIVIDS 153
           D+IVIDS
Sbjct: 123 DMIVIDS 129


>gi|42540759|gb|AAS19280.1| RecA [uncultured delta proteobacterium]
          Length = 138

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/134 (66%), Positives = 111/134 (82%)

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           G    GKTTLALH IA  Q+TGG   FVDAEHALD  YAR+LG+  ++LLISQPDTGEQA
Sbjct: 5   GRSRRGKTTLALHIIAXXQRTGGIAGFVDAEHALDLAYARRLGIATEDLLISQPDTGEQA 64

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI +MLVRSGA+D++V+DSVAAL P+AEIEG+MG++  G+QA  +SQALRKLT +IS+S
Sbjct: 65  LEIAEMLVRSGALDVLVVDSVAALVPKAEIEGEMGDAHMGLQALPLSQALRKLTGTISKS 124

Query: 194 KCILVFINQMRMKI 207
           +  ++FINQ+RMKI
Sbjct: 125 RTAVIFINQIRMKI 138


>gi|180050901|gb|ACB87064.1| RecA [Bacteriovorax sp. MNZ4]
          Length = 118

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 84/117 (71%), Positives = 101/117 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +  +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ QK GGT AF+DAE
Sbjct: 2   VPSISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           HALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++DSVAALTPRA
Sbjct: 62  HALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIVDSVAALTPRA 118


>gi|264665813|gb|ACY70970.1| recombinase A [Tissierella praeacuta]
 gi|264665815|gb|ACY70971.1| recombinase A [Tissierella praeacuta]
 gi|264665817|gb|ACY70972.1| recombinase A [Tissierella praeacuta]
 gi|264665819|gb|ACY70973.1| recombinase A [Tissierella praeacuta]
 gi|264665823|gb|ACY70975.1| recombinase A [Tissierella praeacuta]
 gi|264665825|gb|ACY70976.1| recombinase A [Tissierella praeacuta]
 gi|264665827|gb|ACY70977.1| recombinase A [Tissierella praeacuta]
 gi|264665829|gb|ACY70978.1| recombinase A [Tissierella praeacuta]
 gi|264665831|gb|ACY70979.1| recombinase A [Tissierella praeacuta]
 gi|264665833|gb|ACY70980.1| recombinase A [Tissierella praeacuta]
 gi|264665835|gb|ACY70981.1| recombinase A [Tissierella praeacuta]
 gi|264665837|gb|ACY70982.1| recombinase A [Tissierella praeacuta]
          Length = 120

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 86/120 (71%), Positives = 106/120 (88%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F++AEHALD  YA++LGVD++NL+ISQPDTGEQALEI + LVRSGAVDI+V+DSVAAL P
Sbjct: 1   FIEAEHALDPSYAKRLGVDIENLIISQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           +AEIEG+MG+S  G+QARLMSQALRKL  +I++S   +VFINQ+R K+GVMFGSPETT G
Sbjct: 61  KAEIEGEMGDSHIGLQARLMSQALRKLAGTINKSNSTVVFINQLREKVGVMFGSPETTPG 120


>gi|213389238|gb|ACJ45754.1| RecA [Burkholderia sp. ZM005]
 gi|213389268|gb|ACJ45769.1| RecA [Burkholderia sp. ZMB007-2]
          Length = 129

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 92/127 (72%), Positives = 108/127 (85%), Gaps = 1/127 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 4   FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 62

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 63  VIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 122

Query: 147 DIIVIDS 153
           D+IVIDS
Sbjct: 123 DMIVIDS 129


>gi|98991042|gb|ABF60545.1| RecA [Burkholderia unamae MTI-641]
          Length = 129

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 92/130 (70%), Positives = 109/130 (83%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRLGD-GDAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEI D LVRS
Sbjct: 60  TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEIADALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|264665845|gb|ACY70986.1| recombinase A [Tissierella sp. LBN 291]
          Length = 120

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 106/120 (88%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F++AEHALD  YA++LGVD++NL+ISQPDTGEQALEI + LVRSGA+DI+V+DSVAAL P
Sbjct: 1   FIEAEHALDPAYAKRLGVDIENLIISQPDTGEQALEIAEALVRSGAIDIVVVDSVAALVP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           +AEIEG+MG+S  G+QARLMSQALRKL  +I++S   +VFINQ+R K+GVMFGSPETT G
Sbjct: 61  KAEIEGEMGDSHIGLQARLMSQALRKLAGTINKSNSTVVFINQLREKVGVMFGSPETTPG 120


>gi|124483989|emb|CAM32812.1| RecA protein [Aeromonas schubertii]
 gi|124483991|emb|CAM32813.1| RecA protein [Aeromonas simiae]
          Length = 116

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 85/116 (73%), Positives = 104/116 (89%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA++QK G TCAFVDAEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSGAVD
Sbjct: 1   IAEAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLVSQPDTGEQALEICDMLVRSGAVD 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           +I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+
Sbjct: 61  VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQI 116


>gi|117940183|gb|ABK58219.1| recombinase A [Burkholderia thailandensis]
          Length = 129

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 91/130 (70%), Positives = 109/130 (83%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRLGD-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEI D LVRS
Sbjct: 60  TLQVVAEMQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEIVDALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|163749986|ref|ZP_02157230.1| recombinase A [Shewanella benthica KT99]
 gi|161330260|gb|EDQ01241.1| recombinase A [Shewanella benthica KT99]
          Length = 155

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 84/128 (65%), Positives = 109/128 (85%)

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+TRVKVVKNK+A+PFK
Sbjct: 1   MKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKNGDEVIGNETRVKVVKNKIAAPFK 60

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           Q EF I+YG+GI+  GEL+DLGV   +V+K+GAW+S+KG ++GQGR N+  +L E+ EI+
Sbjct: 61  QAEFQILYGKGINRTGELVDLGVIHKLVEKAGAWYSYKGNKIGQGRANAGKYLIEHPEIS 120

Query: 325 ENIESLLR 332
             IE+ LR
Sbjct: 121 AEIETKLR 128


>gi|71089184|gb|AAZ23670.1| RecA [uncultured Burkholderia sp.]
          Length = 129

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 90/130 (69%), Positives = 110/130 (84%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GDVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  +A+ QK GGT A +DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVVAELQKLGGTAALIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|71089118|gb|AAZ23637.1| RecA [uncultured Burkholderia sp.]
          Length = 129

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 90/130 (69%), Positives = 110/130 (84%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG++M+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGRPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  +A+ QK GGT AF+DAEHALD  YA KLGVD+  LL+SQPDTGEQALEI D LVRS
Sbjct: 60  TLQVVAEMQKLGGTAAFIDAEHALDIQYAAKLGVDVSELLVSQPDTGEQALEIADALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|226088419|dbj|BAH36962.1| recombinase A [Lactobacillus kisonensis]
          Length = 127

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 87/127 (68%), Positives = 110/127 (86%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGEQ L+I
Sbjct: 1   SSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLQI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LV SGAVDI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +IS++K I
Sbjct: 61  TDALVTSGAVDIVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISKTKTI 120

Query: 197 LVFINQM 203
            +FINQ+
Sbjct: 121 AIFINQI 127


>gi|226069498|dbj|BAH36956.1| recombinase A [Lactobacillus hilgardii]
          Length = 128

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 86/128 (67%), Positives = 110/128 (85%)

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTT+ALH +A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGEQ L+ITD
Sbjct: 1   GKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLQITD 60

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            LV SGA+DI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +IS++K I +
Sbjct: 61  TLVTSGAIDIVVIDSVAALVPRAEIEGEMGDTHVGLQARLMSQALRKLSGTISKTKTIAI 120

Query: 199 FINQMRMK 206
           FINQ+R K
Sbjct: 121 FINQIREK 128


>gi|124483993|emb|CAM32814.1| RecA protein [Aeromonas sp. LMG 17321]
          Length = 116

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 84/116 (72%), Positives = 104/116 (89%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA++QK G TCAFVDAEHALD +YA KLGV++ +LL+SQPDTGEQALEI DMLVRSGAVD
Sbjct: 1   IAEAQKMGKTCAFVDAEHALDPVYAAKLGVNVDDLLVSQPDTGEQALEICDMLVRSGAVD 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           +I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+
Sbjct: 61  VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQI 116


>gi|213389242|gb|ACJ45756.1| RecA [Burkholderia sp. ZM010]
          Length = 129

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 91/127 (71%), Positives = 108/127 (85%), Gaps = 1/127 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 4   FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 62

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALE+TD LVRSG++
Sbjct: 63  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEVTDALVRSGSI 122

Query: 147 DIIVIDS 153
           D+IVIDS
Sbjct: 123 DMIVIDS 129


>gi|71089102|gb|AAZ23629.1| RecA [uncultured Burkholderia sp.]
 gi|71089110|gb|AAZ23633.1| RecA [uncultured Burkholderia sp.]
 gi|71089112|gb|AAZ23634.1| RecA [uncultured Burkholderia sp.]
 gi|71089116|gb|AAZ23636.1| RecA [uncultured Burkholderia sp.]
 gi|71089130|gb|AAZ23643.1| RecA [uncultured Burkholderia sp.]
 gi|71089134|gb|AAZ23645.1| RecA [uncultured Burkholderia sp.]
 gi|71089138|gb|AAZ23647.1| RecA [uncultured Burkholderia sp.]
 gi|71089140|gb|AAZ23648.1| RecA [uncultured Burkholderia sp.]
          Length = 129

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 89/130 (68%), Positives = 111/130 (85%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG++M+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  +A+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LVRS
Sbjct: 60  TLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|71089174|gb|AAZ23665.1| RecA [uncultured Burkholderia sp.]
          Length = 129

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 90/130 (69%), Positives = 111/130 (85%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+  K GGT AF+DAEHALD  YA+KLGV+ ++LLISQPD+GEQALEI D LVRS
Sbjct: 60  TLQVIAEMHKLGGTAAFIDAEHALDVQYAQKLGVNAQDLLISQPDSGEQALEIADALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|226069494|dbj|BAH36954.1| recombinase A [Lactobacillus buchneri]
 gi|226088411|dbj|BAH36958.1| recombinase A [Lactobacillus parabuchneri]
 gi|226088596|dbj|BAH37042.1| recombinase A [Lactobacillus sunkii]
          Length = 128

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 86/128 (67%), Positives = 110/128 (85%)

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTT+ALH +A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGEQ L+ITD
Sbjct: 1   GKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLQITD 60

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            LV SGA+DI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +IS++K I +
Sbjct: 61  ALVTSGAIDIVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISKTKTIAI 120

Query: 199 FINQMRMK 206
           FINQ+R K
Sbjct: 121 FINQIREK 128


>gi|312861991|gb|ADR10475.1| recombinase A [Soehngenia saccharolytica]
          Length = 120

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 105/120 (87%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F++AEHALD  YA+KLGVD+ NL+ISQPDTGEQALEIT+ LVRSGA+D++VIDSVAAL P
Sbjct: 1   FIEAEHALDPNYAKKLGVDIDNLIISQPDTGEQALEITEALVRSGAIDVVVIDSVAALVP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           +AEIEG+MG+S  G+QARLMSQALRKL  +I++S    +FINQ+R K+GVMFG+PETT G
Sbjct: 61  KAEIEGEMGDSHIGLQARLMSQALRKLAGAINKSNATCIFINQLREKVGVMFGNPETTPG 120


>gi|264665857|gb|ACY70992.1| recombinase A [Clostridium ultunense]
          Length = 120

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 84/120 (70%), Positives = 106/120 (88%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F++AEHALD  YA+KLGVD++NL++SQPDTGEQ LEIT+ LVRSGAVDI+V+DSVAAL P
Sbjct: 1   FIEAEHALDPNYAKKLGVDVENLIVSQPDTGEQGLEITEALVRSGAVDIVVVDSVAALVP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           +AEIEG+MG+S  G+QARLMSQALRKL  +I++S   ++FINQ+R K+GVMFG+PETT G
Sbjct: 61  KAEIEGEMGDSHVGLQARLMSQALRKLAGAINKSNTTVIFINQLREKVGVMFGNPETTPG 120


>gi|264665853|gb|ACY70990.1| recombinase A [Tissierella sp. IP Prevot 3583]
          Length = 120

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 105/120 (87%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
            ++AEHALD  YA+KLGVD++NL+ISQPDTGEQALEI + LVRSGA+DI+V+DSVAAL P
Sbjct: 1   LIEAEHALDPAYAKKLGVDIENLVISQPDTGEQALEIAEALVRSGAIDIVVVDSVAALVP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           +AEIEG+MG+S  G+QARLMSQALRKL  +I++S   +VFINQ+R K+GVMFGSPETT G
Sbjct: 61  KAEIEGEMGDSHIGLQARLMSQALRKLAGTINKSNSTVVFINQLREKVGVMFGSPETTPG 120


>gi|71089152|gb|AAZ23654.1| RecA [uncultured Burkholderia sp.]
          Length = 129

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 89/130 (68%), Positives = 110/130 (84%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG++M+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LL+SQPDTGEQALEI D LVRS
Sbjct: 60  TLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNELLVSQPDTGEQALEIADALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|71089166|gb|AAZ23661.1| RecA [uncultured Burkholderia sp.]
          Length = 129

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 90/130 (69%), Positives = 112/130 (86%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGP+SSGKTTL
Sbjct: 1   EKQFGKGSIMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPKSSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DA+HALD  YA+KLGV+ ++LLISQPDTGEQALEI D LVRS
Sbjct: 60  TLQVIAEIQKLGGTAAFIDAKHALDVQYAQKLGVNAQDLLISQPDTGEQALEIADALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|180050839|gb|ACB87033.1| RecA [Bacteriovorax sp. PS52B]
          Length = 118

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 87/111 (78%), Positives = 98/111 (88%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           V+S+G LGLD+ALG GG PKGRI+EIYGPESSGKTTL LH  AQ QK GGT AFVDAEHA
Sbjct: 3   VISTGCLGLDLALGAGGIPKGRIIEIYGPESSGKTTLTLHIAAQCQKQGGTVAFVDAEHA 62

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           LD+ YA KLGVD+ N LISQPD+GEQALEITDMLVRSGAVD++++DSVAAL
Sbjct: 63  LDTTYAAKLGVDIPNTLISQPDSGEQALEITDMLVRSGAVDLLIVDSVAAL 113


>gi|124483921|emb|CAM32778.1| RecA protein [Aeromonas media]
 gi|124483929|emb|CAM32782.1| RecA protein [Aeromonas sp. V47]
 gi|124483931|emb|CAM32783.1| RecA protein [Aeromonas media]
 gi|124483933|emb|CAM32784.1| RecA protein [Aeromonas sp. V69]
 gi|124483939|emb|CAM32787.1| RecA protein [Aeromonas enteropelogenes]
 gi|124483941|emb|CAM32788.1| RecA protein [Aeromonas sp. F458]
 gi|124483943|emb|CAM32789.1| RecA protein [Aeromonas sp. F589]
 gi|124483951|emb|CAM32793.1| RecA protein [Aeromonas hydrophila subsp. ranae]
 gi|124483953|emb|CAM32794.1| RecA protein [Aeromonas sp. V30]
 gi|124483955|emb|CAM32795.1| RecA protein [Aeromonas sp. V83]
 gi|124483957|emb|CAM32796.1| RecA protein [Aeromonas sp. V97]
 gi|124483959|emb|CAM32797.1| RecA protein [Aeromonas caviae]
 gi|124483961|emb|CAM32798.1| RecA protein [Aeromonas sp. V39]
 gi|124483963|emb|CAM32799.1| RecA protein [Aeromonas hydrophila subsp. anaerogenes]
 gi|124483965|emb|CAM32800.1| RecA protein [Aeromonas sp. F507C]
 gi|124483967|emb|CAM32801.1| RecA protein [Aeromonas hydrophila subsp. dhakensis]
 gi|124483969|emb|CAM32802.1| RecA protein [Aeromonas jandaei]
 gi|124483971|emb|CAM32803.1| RecA protein [Aeromonas sp. JF2638]
 gi|124483973|emb|CAM32804.1| RecA protein [Aeromonas sp. JF2853]
 gi|124483975|emb|CAM32805.1| RecA protein [Aeromonas veronii bv. sobria]
 gi|124483977|emb|CAM32806.1| RecA protein [Aeromonas allosaccharophila]
 gi|124483979|emb|CAM32807.1| RecA protein [Aeromonas veronii bv. veronii]
 gi|124483983|emb|CAM32809.1| RecA protein [Aeromonas veronii]
 gi|124483987|emb|CAM32811.1| RecA protein [Aeromonas molluscorum]
          Length = 116

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 85/116 (73%), Positives = 103/116 (88%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA++QK G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD
Sbjct: 1   IAEAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVD 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           +I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+
Sbjct: 61  VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQI 116


>gi|71089136|gb|AAZ23646.1| RecA [uncultured Burkholderia sp.]
          Length = 129

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 88/130 (67%), Positives = 112/130 (86%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG++M+LG+  ++ E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSVMRLGTSEAV-EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  +A+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LVRS
Sbjct: 60  TLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|71089186|gb|AAZ23671.1| RecA [uncultured Burkholderia sp.]
          Length = 129

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 91/130 (70%), Positives = 109/130 (83%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+ G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRTGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVID+
Sbjct: 120 GSIDMIVIDT 129


>gi|71089106|gb|AAZ23631.1| RecA [uncultured Burkholderia sp.]
          Length = 128

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 89/127 (70%), Positives = 109/127 (85%), Gaps = 1/127 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 3   FGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 61

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            +A+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++
Sbjct: 62  VVAKMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVRSGSI 121

Query: 147 DIIVIDS 153
           D+IVIDS
Sbjct: 122 DMIVIDS 128


>gi|71089154|gb|AAZ23655.1| RecA [uncultured Burkholderia sp.]
          Length = 128

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 89/127 (70%), Positives = 108/127 (85%), Gaps = 1/127 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 3   FGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 61

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            +A+ QK GGT AF+DAEHALD  YA KLGV++  LL+SQPDTGEQALEI D LVRSG++
Sbjct: 62  VVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNELLVSQPDTGEQALEIADALVRSGSI 121

Query: 147 DIIVIDS 153
           D+IVIDS
Sbjct: 122 DMIVIDS 128


>gi|124483985|emb|CAM32810.1| RecA protein [Aeromonas sp. F474]
          Length = 115

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 85/115 (73%), Positives = 102/115 (88%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA++QK G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD
Sbjct: 1   IAEAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVD 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           +I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ
Sbjct: 61  VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQ 115


>gi|213389234|gb|ACJ45752.1| RecA [Burkholderia sp. ZYB002]
          Length = 129

 Score =  182 bits (463), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 91/127 (71%), Positives = 107/127 (84%), Gaps = 1/127 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+G LGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 4   FGKGSIMRMGD-GEAAEDIQVVSTGPLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 62

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 63  VIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 122

Query: 147 DIIVIDS 153
           D+IVIDS
Sbjct: 123 DMIVIDS 129


>gi|124483937|emb|CAM32786.1| RecA protein [Aeromonas sp. F713E]
          Length = 116

 Score =  182 bits (463), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 85/116 (73%), Positives = 102/116 (87%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA++QK G TCAFVDAEHALD IYA KLGV++  LLISQPDTGEQALEI DMLVRS AVD
Sbjct: 1   IAEAQKKGKTCAFVDAEHALDPIYAAKLGVNVDELLISQPDTGEQALEICDMLVRSNAVD 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           +I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+
Sbjct: 61  VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQI 116


>gi|264665841|gb|ACY70984.1| recombinase A [Tissierella sp. AIP 285.00]
          Length = 120

 Score =  182 bits (463), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 105/120 (87%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F++AEHALD  YA+KLGVD++NL++SQPDTGEQALEI + LVRSGAVD+IVIDSVAAL P
Sbjct: 1   FIEAEHALDPGYAKKLGVDVENLIVSQPDTGEQALEIAEALVRSGAVDVIVIDSVAALVP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           +AEIEG+MG+S  G+QARLMSQALRKL  +I++S    +FINQ+R K+GVMFG+PETT G
Sbjct: 61  KAEIEGEMGDSHVGLQARLMSQALRKLAGAINKSNTTTIFINQLREKVGVMFGNPETTPG 120


>gi|213389260|gb|ACJ45765.1| RecA [Burkholderia sp. VSB012]
          Length = 129

 Score =  182 bits (463), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 91/127 (71%), Positives = 107/127 (84%), Gaps = 1/127 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 4   FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 62

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++   LISQPDTGEQALEITD LVRSG++
Sbjct: 63  VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPEPLISQPDTGEQALEITDALVRSGSI 122

Query: 147 DIIVIDS 153
           D+IVIDS
Sbjct: 123 DMIVIDS 129


>gi|327314979|emb|CCA61103.1| recombinase A [Rhodopseudomonas sp. JA576]
          Length = 112

 Score =  182 bits (462), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 82/112 (73%), Positives = 104/112 (92%)

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD +YARKLGV++ +LLISQPD GEQALEI D LVRSGA+D++++DSVAAL PRAE
Sbjct: 1   AEHALDPVYARKLGVNVDDLLISQPDHGEQALEIADTLVRSGAIDVLIVDSVAALVPRAE 60

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           +EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIGVM+GSP
Sbjct: 61  LEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVMYGSP 112


>gi|71089096|gb|AAZ23626.1| RecA [uncultured Burkholderia sp.]
          Length = 129

 Score =  182 bits (462), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 89/130 (68%), Positives = 110/130 (84%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG++M+LG+ G   E I+VVS+GSLGLDIALGIGG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSVMRLGA-GEAVEDIQVVSAGSLGLDIALGIGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  +A+ QK GGT AF+DAEHALD  YA  LGV++ +LL+SQPDTGEQALEI D LVRS
Sbjct: 60  TLQVVAEMQKLGGTAAFIDAEHALDIQYAGTLGVNVSDLLVSQPDTGEQALEIADALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|71089114|gb|AAZ23635.1| RecA [uncultured Burkholderia sp.]
          Length = 128

 Score =  182 bits (461), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 88/129 (68%), Positives = 110/129 (85%), Gaps = 1/129 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG++M+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  +A+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LVRS
Sbjct: 60  TLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVRS 119

Query: 144 GAVDIIVID 152
           G++D+IVID
Sbjct: 120 GSIDMIVID 128


>gi|258677608|gb|ACV87528.1| RecA [uncultured Burkholderia sp.]
          Length = 123

 Score =  182 bits (461), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 89/124 (71%), Positives = 107/124 (86%), Gaps = 1/124 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G++M+LG QG   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSVMRLG-QGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA+KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+I
Sbjct: 60  EMQKIGGTAAFIDAEHALDIQYAQKLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMI 119

Query: 150 VIDS 153
           VIDS
Sbjct: 120 VIDS 123


>gi|264665821|gb|ACY70974.1| recombinase A [Tissierella praeacuta]
          Length = 120

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 105/120 (87%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F++AEHALD  YA++LGVD++NL+ISQPDTGEQALEI + LVRSGAVDI+V+DSVAAL P
Sbjct: 1   FIEAEHALDPSYAKRLGVDIENLIISQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           +AEI G+MG+S  G+QARLMSQALRKL  +I++S   +VFINQ+R K+GVMFGSPETT G
Sbjct: 61  KAEIGGEMGDSHIGLQARLMSQALRKLAGTINKSNSTVVFINQLREKVGVMFGSPETTPG 120


>gi|117940185|gb|ABK58220.1| recombinase A [Burkholderia thailandensis]
          Length = 129

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 90/130 (69%), Positives = 108/130 (83%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRLGD-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEI D LVRS
Sbjct: 60  TLQVVAEMQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEIVDALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVI S
Sbjct: 120 GSIDMIVIAS 129


>gi|24251188|gb|AAN46109.1| RecA [Bacillus cereus]
          Length = 150

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 98/150 (65%), Positives = 123/150 (82%)

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I++SK I +FINQ+R K+GVM
Sbjct: 1   IDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVM 60

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETT GG ALKFYS+VRL++RR   +K  + I GN+T+VKVVKNK+A PF+  E DI
Sbjct: 61  FGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDI 120

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           MYGEGIS  GE++D+  +  IV KSGAW+S
Sbjct: 121 MYGEGISREGEILDMASELDIVQKSGAWYS 150


>gi|226428986|gb|ACO55113.1| recombinase A [Allochromatium vinosum DSM 180]
 gi|226428988|gb|ACO55114.1| recombinase A [Allochromatium minutissimum]
 gi|226428990|gb|ACO55115.1| recombinase A [Allochromatium sp. AX1YPE]
 gi|226428994|gb|ACO55117.1| recombinase A [Allochromatium vinosum]
 gi|226428996|gb|ACO55118.1| recombinase A [Allochromatium vinosum]
          Length = 124

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 96/124 (77%), Positives = 113/124 (91%)

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           +SQK GGT AFVDAEHALD +YA KLGV++ +LL+SQPDTGEQALEITDMLVRSGAVD++
Sbjct: 1   ESQKLGGTAAFVDAEHALDPVYAEKLGVNMTDLLVSQPDTGEQALEITDMLVRSGAVDVV 60

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT +I RS C ++FINQ+RMKIGV
Sbjct: 61  VVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCCVIFINQIRMKIGV 120

Query: 210 MFGS 213
           MFGS
Sbjct: 121 MFGS 124


>gi|124483947|emb|CAM32791.1| RecA protein [Aeromonas sp. F567A]
          Length = 116

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/116 (72%), Positives = 102/116 (87%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           I ++QK G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD
Sbjct: 1   IXEAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVD 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           +I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+
Sbjct: 61  VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQI 116


>gi|20799009|emb|CAD30713.2| glutamine synthetase I [Mesorhizobium sp. HN8A1]
          Length = 423

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 86/112 (76%), Positives = 97/112 (86%), Gaps = 1/112 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
             LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++Q
Sbjct: 313 FPLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQ 371

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSG
Sbjct: 372 KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSG 423


>gi|124483945|emb|CAM32790.1| RecA protein [Aeromonas sp. V15]
 gi|124483949|emb|CAM32792.1| RecA protein [Aeromonas hydrophila]
          Length = 116

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/116 (72%), Positives = 102/116 (87%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA++Q  G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD
Sbjct: 1   IAEAQXKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVD 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           +I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+
Sbjct: 61  VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQI 116


>gi|33622425|gb|AAQ23477.1| RecA protein [Acinetobacter baumannii]
 gi|33622429|gb|AAQ23479.1| RecA protein [Acinetobacter baumannii]
 gi|33622431|gb|AAQ23480.1| RecA protein [Acinetobacter baumannii]
 gi|33622433|gb|AAQ23481.1| RecA protein [Acinetobacter baumannii]
 gi|33622435|gb|AAQ23482.1| RecA protein [Acinetobacter baumannii]
 gi|33622437|gb|AAQ23483.1| RecA protein [Acinetobacter baumannii]
 gi|33622439|gb|AAQ23484.1| RecA protein [Acinetobacter baumannii]
          Length = 111

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 83/111 (74%), Positives = 99/111 (89%)

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK+GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLVRSGA+D+IV
Sbjct: 1   CQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIV 60

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           +DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN
Sbjct: 61  VDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 111


>gi|124483925|emb|CAM32780.1| RecA protein [Aeromonas eucrenophila]
 gi|124483927|emb|CAM32781.1| RecA protein [Aeromonas sp. F729F]
          Length = 116

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/116 (72%), Positives = 101/116 (87%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           I ++QK G TCAFVDAEHALD IYA KLGV++  LLISQPDTGEQALEI DMLVRS AVD
Sbjct: 1   IXEAQKKGKTCAFVDAEHALDPIYAAKLGVNVDELLISQPDTGEQALEICDMLVRSNAVD 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           +I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+
Sbjct: 61  VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQI 116


>gi|213389240|gb|ACJ45755.1| RecA [Burkholderia sp. ZM008]
          Length = 129

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 91/127 (71%), Positives = 107/127 (84%), Gaps = 1/127 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 4   FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 62

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LV SG++
Sbjct: 63  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVCSGSI 122

Query: 147 DIIVIDS 153
           D+IVIDS
Sbjct: 123 DMIVIDS 129


>gi|124483881|emb|CAM32758.1| RecA protein [Aeromonas salmonicida subsp. salmonicida]
 gi|124483883|emb|CAM32759.1| RecA protein [Aeromonas sp. V32]
 gi|124483885|emb|CAM32760.1| RecA protein [Aeromonas sp. V155]
 gi|124483887|emb|CAM32761.1| RecA protein [Aeromonas sp. V130]
 gi|124483889|emb|CAM32762.1| RecA protein [Aeromonas sp. F553E]
 gi|124483891|emb|CAM32763.1| RecA protein [Aeromonas sp. V1]
 gi|124483893|emb|CAM32764.1| RecA protein [Aeromonas sp. V23]
 gi|124483895|emb|CAM32765.1| RecA protein [Aeromonas sp. V183]
 gi|124483897|emb|CAM32766.1| RecA protein [Aeromonas sp. F666I]
 gi|124483899|emb|CAM32767.1| RecA protein [Aeromonas bestiarum]
 gi|124483903|emb|CAM32769.1| RecA protein [Aeromonas popoffii]
 gi|124483905|emb|CAM32770.1| RecA protein [Aeromonas sp. F533E]
 gi|124483909|emb|CAM32772.1| RecA protein [Aeromonas sp. F548B]
 gi|124483911|emb|CAM32773.1| RecA protein [Aeromonas sp. F600C]
 gi|124483913|emb|CAM32774.1| RecA protein [Aeromonas sobria]
 gi|124483915|emb|CAM32775.1| RecA protein [Aeromonas encheleia]
 gi|124483917|emb|CAM32776.1| RecA protein [Aeromonas encheleia]
          Length = 116

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 83/116 (71%), Positives = 102/116 (87%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA++QK G  CAF+DAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD
Sbjct: 1   IAEAQKKGKVCAFIDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVD 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           +I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+
Sbjct: 61  VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQI 116


>gi|180050869|gb|ACB87048.1| RecA [Bacteriovorax sp. T3]
          Length = 142

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/114 (73%), Positives = 98/114 (85%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            PKGRI+EIYGPESSGKTTL LH  A+ QK GGT AFVDAEHALD++YA  LGVD+ N L
Sbjct: 21  VPKGRIIEIYGPESSGKTTLTLHIAAECQKEGGTVAFVDAEHALDTVYASNLGVDIPNTL 80

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ISQPD+GEQALEI DMLVRS AVD++++DSVAALTPRAE+EGDMG++  G+ AR
Sbjct: 81  ISQPDSGEQALEIADMLVRSRAVDLLLVDSVAALTPRAELEGDMGDTHLGLHAR 134


>gi|180050867|gb|ACB87047.1| RecA [Bacteriovorax sp. T1]
          Length = 142

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/114 (73%), Positives = 98/114 (85%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            PKGRI+EIYGPESSGKTTL LH  A+ QK GGT AFVDAEHALD++YA  LGVD+ N L
Sbjct: 21  VPKGRIIEIYGPESSGKTTLTLHIAAECQKEGGTVAFVDAEHALDTVYASNLGVDIPNTL 80

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ISQPD+GEQALEI DMLVRS AVD++++DSVAALTPRAE+EGDMG++  G+ AR
Sbjct: 81  ISQPDSGEQALEIADMLVRSRAVDLLLVDSVAALTPRAELEGDMGDTHLGLHAR 134


>gi|124483907|emb|CAM32771.1| RecA protein [Aeromonas sp. F674P]
          Length = 116

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 83/116 (71%), Positives = 102/116 (87%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA++QK G  CAF+DAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD
Sbjct: 1   IAEAQKKGKVCAFIDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVD 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           +I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+
Sbjct: 61  VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLXIFINQI 116


>gi|33622427|gb|AAQ23478.1| RecA protein [Acinetobacter baumannii]
          Length = 111

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 82/111 (73%), Positives = 99/111 (89%)

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK+GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLVRSGA+D+I+
Sbjct: 1   CQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLII 60

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           +DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN
Sbjct: 61  VDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 111


>gi|180050871|gb|ACB87049.1| RecA [Bacteriovorax sp. T2]
          Length = 134

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 84/114 (73%), Positives = 98/114 (85%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            PKGRI+EIYGPESSGKTTL LH  A+ QK GGT AFVDAEHALD++YA  LGVD+ N L
Sbjct: 21  VPKGRIIEIYGPESSGKTTLTLHIAAECQKEGGTVAFVDAEHALDTVYASNLGVDIPNTL 80

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ISQPD+GEQALEI DMLVRS AVD++++DSVAALTPRAE+EGDMG++  G+ AR
Sbjct: 81  ISQPDSGEQALEIADMLVRSRAVDLLLVDSVAALTPRAELEGDMGDTHLGLHAR 134


>gi|124483923|emb|CAM32779.1| RecA protein [Aeromonas sp. V6]
          Length = 116

 Score =  180 bits (456), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 84/116 (72%), Positives = 102/116 (87%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA++QK G TCAFV AEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD
Sbjct: 1   IAEAQKKGKTCAFVRAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVD 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           +I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+
Sbjct: 61  VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQI 116


>gi|180050801|gb|ACB87014.1| RecA [Bacteriovorax sp. SAN5]
 gi|180050895|gb|ACB87061.1| RecA [Bacteriovorax sp. MNZ5]
          Length = 118

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 85/116 (73%), Positives = 102/116 (87%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ QK GGT AF+DAEHAL
Sbjct: 3   ISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEHAL 62

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           D+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++DSVAALTPRAE+
Sbjct: 63  DTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIVDSVAALTPRAEL 118


>gi|124483919|emb|CAM32777.1| RecA protein [Aeromonas sp. F544A]
          Length = 116

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 83/116 (71%), Positives = 101/116 (87%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA++QK G  CAF+DAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD
Sbjct: 1   IAEAQKKGKVCAFIDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVD 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           +I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C  +FINQ+
Sbjct: 61  VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCXCIFINQI 116


>gi|77167163|gb|ABA62556.1| recombinase [Clostridium perfringens]
 gi|77167165|gb|ABA62557.1| recombinase [Clostridium perfringens]
 gi|77167167|gb|ABA62558.1| recombinase [Clostridium perfringens]
 gi|77167169|gb|ABA62559.1| recombinase [Clostridium perfringens]
 gi|77167171|gb|ABA62560.1| recombinase [Clostridium perfringens]
 gi|77167173|gb|ABA62561.1| recombinase [Clostridium perfringens]
 gi|77167175|gb|ABA62562.1| recombinase [Clostridium perfringens]
 gi|77167177|gb|ABA62563.1| recombinase [Clostridium perfringens]
 gi|77167179|gb|ABA62564.1| recombinase [Clostridium perfringens]
 gi|77167181|gb|ABA62565.1| recombinase [Clostridium perfringens]
 gi|77167183|gb|ABA62566.1| recombinase [Clostridium perfringens]
 gi|77167185|gb|ABA62567.1| recombinase [Clostridium perfringens]
 gi|77167187|gb|ABA62568.1| recombinase [Clostridium perfringens]
 gi|77167189|gb|ABA62569.1| recombinase [Clostridium perfringens]
          Length = 120

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 82/120 (68%), Positives = 103/120 (85%)

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRKLT +I++S C+++FINQ+R K+G+MFG+PETT GG AL
Sbjct: 1   EGEMGDSHVGLQARLMSQALRKLTGTINKSNCVVIFINQLREKVGIMFGNPETTPGGRAL 60

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+SVR+DIRR+ SIK  D ITGN+TRVK+VKNK+A PFKQ EFDIMY EGIS  G ++
Sbjct: 61  KFYASVRMDIRRIDSIKQGDGITGNRTRVKIVKNKVAPPFKQAEFDIMYNEGISKEGNIV 120


>gi|180050851|gb|ACB87039.1| RecA [Bacteriovorax sp. PS22S]
          Length = 115

 Score =  179 bits (455), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 86/111 (77%), Positives = 97/111 (87%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           V+S+G LGLD+ALG  G PKGRI+EIYGPESSGKTTL LH  AQ QK GGT AFVDAEHA
Sbjct: 2   VISTGCLGLDLALGAVGIPKGRIIEIYGPESSGKTTLTLHIAAQCQKQGGTVAFVDAEHA 61

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           LD+ YA KLGVD+ N LISQPD+GEQALEITDMLVRSGAVD++++DSVAAL
Sbjct: 62  LDTTYAAKLGVDIPNTLISQPDSGEQALEITDMLVRSGAVDLLIVDSVAAL 112


>gi|180050861|gb|ACB87044.1| RecA [Bacteriovorax sp. MIA1]
          Length = 135

 Score =  179 bits (454), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 82/107 (76%), Positives = 95/107 (88%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            PKGRI+EIYGPESSGKTTL LH  A+ QK GGT AFVDAEHALD++YA  LGVD+ N L
Sbjct: 27  VPKGRIIEIYGPESSGKTTLTLHIAAECQKEGGTVAFVDAEHALDTVYASNLGVDIPNTL 86

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           ISQPD+GEQALEI DMLVRSGAVD++++DSVAALTPRAE+EGDMG++
Sbjct: 87  ISQPDSGEQALEIADMLVRSGAVDLLIVDSVAALTPRAELEGDMGDT 133


>gi|180050877|gb|ACB87052.1| RecA [Bacteriovorax sp. T5]
          Length = 133

 Score =  179 bits (454), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 83/111 (74%), Positives = 97/111 (87%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            PKGRI+EIYGPESSGKTTL LH  A+ QK GGT AFVDAEHALD++YA  LGVD+ N L
Sbjct: 23  VPKGRIIEIYGPESSGKTTLTLHIAAECQKEGGTVAFVDAEHALDTVYASNLGVDIPNTL 82

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           ISQPD+GEQALEI DMLVRSGAVD++++DSVAALTPRAE+EGDMG++  G+
Sbjct: 83  ISQPDSGEQALEIADMLVRSGAVDLLIVDSVAALTPRAELEGDMGDTHLGL 133


>gi|71089128|gb|AAZ23642.1| RecA [uncultured Burkholderia sp.]
          Length = 129

 Score =  179 bits (453), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 88/130 (67%), Positives = 108/130 (83%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG++M+LG+ G   E I+VVS+GSLGLDIALG+GG  +GR+VEIY PESSGKTTL
Sbjct: 1   EKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLLRGRVVEIYRPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  +A+ QK GGT AF+DAEHALD  YA KLGVD+  LL+SQPDTGEQALEI D LVRS
Sbjct: 60  TLQVVAEMQKLGGTAAFIDAEHALDIQYAAKLGVDVSELLVSQPDTGEQALEIADALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|71089144|gb|AAZ23650.1| RecA [uncultured Burkholderia sp.]
          Length = 129

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 88/130 (67%), Positives = 109/130 (83%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG++M+LG+ G   E I+VVS+GSLGLDIALG GG P+GR+VEIYGP SSGKTTL
Sbjct: 1   EKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGDGGLPRGRVVEIYGPVSSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  +A+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LVRS
Sbjct: 60  TLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|124483901|emb|CAM32768.1| RecA protein [Aeromonas sp. F530D]
          Length = 116

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 82/116 (70%), Positives = 100/116 (86%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA++Q  G  CAF+DAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD
Sbjct: 1   IAEAQNKGKVCAFIDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVD 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           +I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT +I  + C+ +FINQ+
Sbjct: 61  VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTXNIKNANCLCIFINQI 116


>gi|77167191|gb|ABA62570.1| recombinase [Clostridium perfringens]
          Length = 120

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 81/120 (67%), Positives = 103/120 (85%)

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRKLT +I++S C+++FINQ+R K+G+MFG+PETT GG AL
Sbjct: 1   EGEMGDSHVGLQARLMSQALRKLTGTINKSNCVVIFINQLREKVGIMFGNPETTPGGRAL 60

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+SVR+DIRR+ SIK  D ITGN+TRVK+VKNK+A PFKQ +FDIMY EGIS  G ++
Sbjct: 61  KFYASVRMDIRRIDSIKQGDGITGNRTRVKIVKNKVAPPFKQADFDIMYNEGISKEGNIV 120


>gi|71089142|gb|AAZ23649.1| RecA [uncultured Burkholderia sp.]
          Length = 128

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 87/129 (67%), Positives = 108/129 (83%), Gaps = 1/129 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG++M+LG+ G   E I VVS+GSLGL IALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSVMRLGA-GEAVEDIPVVSTGSLGLGIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  +A+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LVRS
Sbjct: 60  TLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVRS 119

Query: 144 GAVDIIVID 152
           G++D+IVID
Sbjct: 120 GSIDMIVID 128


>gi|180050841|gb|ACB87034.1| RecA [Bacteriovorax sp. IH11]
          Length = 112

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 84/111 (75%), Positives = 98/111 (88%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           V+S+G LGLD+ALG+ G PKGRI+EIYGPESSGKTTL LH  AQ QK GGT AF+DAEHA
Sbjct: 2   VISTGCLGLDLALGVVGIPKGRIIEIYGPESSGKTTLTLHIAAQCQKQGGTVAFLDAEHA 61

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           LD+ YA KLGVD+ N LISQPD+GE+ALEITDMLVRSGAVD++++DSVAAL
Sbjct: 62  LDTTYAAKLGVDIPNTLISQPDSGERALEITDMLVRSGAVDLLIVDSVAAL 112


>gi|98991040|gb|ABF60544.1| RecA [Burkholderia ferrariae]
          Length = 117

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/115 (74%), Positives = 99/115 (86%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
           G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT 
Sbjct: 3   GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTA 62

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
           AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDS
Sbjct: 63  AFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDS 117


>gi|213012366|gb|ACJ38749.1| recombination-repair protein [Vibrio alginolyticus]
          Length = 113

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 79/113 (69%), Positives = 101/113 (89%)

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEI
Sbjct: 1   EHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEI 60

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPET 216
           EG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PET
Sbjct: 61  EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPET 113


>gi|71089148|gb|AAZ23652.1| RecA [uncultured Burkholderia sp.]
          Length = 128

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 87/127 (68%), Positives = 106/127 (83%), Gaps = 1/127 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG+ G   E I VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 3   FGKGSVMRLGA-GEAVEDIPVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 61

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            +A+ QK GGT AF+DAEHALD  YA KLGV++  LL+SQPDTGEQALEI D L+RS ++
Sbjct: 62  VVAEMQKLGGTAAFIDAEHALDFQYAGKLGVNVNELLVSQPDTGEQALEIADALLRSVSI 121

Query: 147 DIIVIDS 153
           D+IVIDS
Sbjct: 122 DMIVIDS 128


>gi|180050883|gb|ACB87055.1| RecA [Bacteriovorax sp. MIA2]
          Length = 148

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 100/147 (68%), Positives = 119/147 (80%), Gaps = 4/147 (2%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           AIM+L +  +  E I  +S+G LGLD+ LGIGG PKGRI+EIYGPESSGKTTL LH  A+
Sbjct: 1   AIMKLDADSNTPEKIPAISTGCLGLDLGLGIGGVPKGRIIEIYGPESSGKTTLTLHIAAE 60

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AFVDAEHALD++YA  LGVD+ N LISQPD+GEQALEI DMLVRSGAVD+++
Sbjct: 61  CQKEGGTVAFVDAEHALDTVYASNLGVDIPNTLISQPDSGEQALEIADMLVRSGAVDLLI 120

Query: 151 IDSVAALTPRAEIEG-DMGES---LPG 173
           +DSVAALTPRAE+   DMG++   LPG
Sbjct: 121 VDSVAALTPRAELRARDMGDTHMGLPG 147


>gi|71089100|gb|AAZ23628.1| RecA [uncultured Burkholderia sp.]
          Length = 127

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 86/128 (67%), Positives = 108/128 (84%), Gaps = 1/128 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG++M+LG+ G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  +A+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LV S
Sbjct: 60  TLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVLS 119

Query: 144 GAVDIIVI 151
           G++D+IVI
Sbjct: 120 GSIDMIVI 127


>gi|71089132|gb|AAZ23644.1| RecA [uncultured Burkholderia sp.]
          Length = 128

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 86/127 (67%), Positives = 107/127 (84%), Gaps = 1/127 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+L   G + E I+VVS+GSLGL IALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 3   FGKGSVMRL-VAGEVVEDIQVVSTGSLGLYIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 61

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            +A+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPD+GEQALEI D LVRSG++
Sbjct: 62  VVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDSGEQALEIADALVRSGSM 121

Query: 147 DIIVIDS 153
           D+IVIDS
Sbjct: 122 DMIVIDS 128


>gi|254002712|dbj|BAH85306.1| recombination protein [Sphingomonas sp. SS86]
          Length = 113

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 85/113 (75%), Positives = 98/113 (86%)

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTLALH IA++QK GG  AFVDAEHALD  YA+KLGVD+  L++SQPDTGEQALEI D 
Sbjct: 1   KTTLALHAIAEAQKAGGIAAFVDAEHALDPGYAKKLGVDIDELIVSQPDTGEQALEIVDT 60

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           LVRS A+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT SISR
Sbjct: 61  LVRSNAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGSISR 113


>gi|180050813|gb|ACB87020.1| RecA [Bacteriovorax sp. MNZ1]
          Length = 117

 Score =  176 bits (445), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 80/110 (72%), Positives = 96/110 (87%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ QK GGT AF+DAEHAL
Sbjct: 5   ISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEHAL 64

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           D+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++DSVAAL
Sbjct: 65  DTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIVDSVAAL 114


>gi|254002714|dbj|BAH85307.1| recombination protein [Sphingomonas sp. SS04-1]
          Length = 114

 Score =  176 bits (445), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 85/113 (75%), Positives = 98/113 (86%)

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTLALH IA++QK GG  AFVDAEHALD  YA+KLGVD+  L++SQPDTGEQALEI D 
Sbjct: 2   KTTLALHAIAEAQKAGGIAAFVDAEHALDPGYAKKLGVDIDELIVSQPDTGEQALEIVDT 61

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           LVRS A+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT SISR
Sbjct: 62  LVRSNAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGSISR 114


>gi|180050853|gb|ACB87040.1| RecA [Bacteriovorax sp. PS23S]
          Length = 111

 Score =  176 bits (445), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 82/110 (74%), Positives = 97/110 (88%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           V+S+G LGLD+ALG+ G PKGRI++IYGPESSGKTTL LH  AQ QK GGT AF+DAEHA
Sbjct: 2   VISTGCLGLDLALGVVGIPKGRIIQIYGPESSGKTTLTLHIAAQCQKQGGTVAFLDAEHA 61

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
           LD+ YA KLGVD+ N LISQPD+GEQALEITDMLVR+GAVD++++DSVAA
Sbjct: 62  LDTTYAAKLGVDIPNTLISQPDSGEQALEITDMLVRTGAVDLLIVDSVAA 111


>gi|180050903|gb|ACB87065.1| RecA [Bacteriovorax sp. SAN1]
          Length = 112

 Score =  176 bits (445), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 80/110 (72%), Positives = 96/110 (87%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ QK GGT AF+DAEHAL
Sbjct: 3   ISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEHAL 62

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           D+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++DSVAAL
Sbjct: 63  DTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIVDSVAAL 112


>gi|180050879|gb|ACB87053.1| RecA [Bacteriovorax sp. T4]
          Length = 144

 Score =  176 bits (445), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 96/138 (69%), Positives = 114/138 (82%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+L +  +  E I  +S+G LGLD+ LGIGG PKGRI+EIYGPESSGKTTL LH  A+
Sbjct: 1   SIMKLDADSNTPEKIPAISTGCLGLDLGLGIGGVPKGRIIEIYGPESSGKTTLTLHIAAE 60

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AFVDAEHALD++YA  LGVD+ N LISQPD+GEQALEI DMLVRSGAVD+++
Sbjct: 61  CQKEGGTVAFVDAEHALDTVYASNLGVDIPNTLISQPDSGEQALEIADMLVRSGAVDLLI 120

Query: 151 IDSVAALTPRAEIEGDMG 168
           +DSVAALTPRAE+EG  G
Sbjct: 121 VDSVAALTPRAELEGRHG 138


>gi|290581705|gb|ADD51494.1| RecA [Burkholderia sp. GB-01]
          Length = 121

 Score =  176 bits (445), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 88/122 (72%), Positives = 103/122 (84%), Gaps = 1/122 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRMGD-GEATEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119

Query: 148 II 149
           +I
Sbjct: 120 MI 121


>gi|180050805|gb|ACB87016.1| RecA [Bacteriovorax sp. SAN4]
          Length = 110

 Score =  176 bits (445), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 80/110 (72%), Positives = 96/110 (87%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ QK GGT AF+DAEHAL
Sbjct: 1   ISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           D+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++DSVAAL
Sbjct: 61  DTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIVDSVAAL 110


>gi|323424254|emb|CBZ39274.1| recombinase A [Thiorhodococcus bheemlicus]
          Length = 119

 Score =  175 bits (444), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 82/107 (76%), Positives = 98/107 (91%)

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
            A KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAALTP+AEIEG+MG+S
Sbjct: 13  LAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAALTPKAEIEGEMGDS 72

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
             G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMFGSPE T
Sbjct: 73  HVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSPEAT 119


>gi|290795173|gb|ADD64601.1| RecA recombinase [Vibrio splendidus]
          Length = 125

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 86/127 (67%), Positives = 104/127 (81%), Gaps = 2/127 (1%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   ++ +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVKTISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQAL+I D L RSGA+D++V
Sbjct: 59  AQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALKICDALARSGAIDVLV 118

Query: 151 IDSVAAL 157
           IDSVAAL
Sbjct: 119 IDSVAAL 125


>gi|226088211|dbj|BAH36957.1| recombinase A [Lactobacillus kefiri]
          Length = 125

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 82/125 (65%), Positives = 106/125 (84%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ALH +A+  K GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGEQ L+ITD LV
Sbjct: 1   TVALHAVAEVPKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLQITDALV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
            SGA+DI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +IS++K I +FIN
Sbjct: 61  TSGAIDIVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISKTKTIAIFIN 120

Query: 202 QMRMK 206
           Q+R K
Sbjct: 121 QIREK 125


>gi|300603423|emb|CBN73205.1| recombinase A [Marichromatium sp. JA638]
          Length = 116

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 81/105 (77%), Positives = 98/105 (93%)

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAALTP+AEIEG+MG+
Sbjct: 12  VYAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAALTPKAEIEGEMGD 71

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           S  G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMFGSP
Sbjct: 72  SHVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSP 116


>gi|258677606|gb|ACV87527.1| RecA [uncultured Burkholderia sp.]
          Length = 113

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 84/113 (74%), Positives = 98/113 (86%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF
Sbjct: 1   VVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKIGGTAAF 60

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
           +DAEHALD  YA+KLGV+  +LLISQPDTGEQALEI D LVRSG++D+IVIDS
Sbjct: 61  IDAEHALDVQYAQKLGVNASDLLISQPDTGEQALEIADALVRSGSIDMIVIDS 113


>gi|180050807|gb|ACB87017.1| RecA [Bacteriovorax sp. MANZ2]
          Length = 118

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/110 (71%), Positives = 96/110 (87%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ QK GGT AF+DAEHAL
Sbjct: 5   ISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEHAL 64

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           D+ YA KLGV++ N LISQPD+GEQALEI DMLVRS AVD++++DSVAAL
Sbjct: 65  DTYYAEKLGVEVPNTLISQPDSGEQALEIADMLVRSAAVDLLIVDSVAAL 114


>gi|71089104|gb|AAZ23630.1| RecA [uncultured Burkholderia sp.]
          Length = 127

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/128 (66%), Positives = 105/128 (82%), Gaps = 1/128 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG++M+L S G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSVMRL-SAGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  +A+ QK GGT AF+DAEHALD  YA KLGV+  +LL+ QPDTGEQALE  D LVRS
Sbjct: 60  TLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNASDLLVPQPDTGEQALETADALVRS 119

Query: 144 GAVDIIVI 151
           G++D+IVI
Sbjct: 120 GSIDMIVI 127


>gi|291246140|gb|ADD85194.1| RecA [Borrelia recurrentis]
          Length = 128

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 80/128 (62%), Positives = 108/128 (84%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA+ QKTGG  AF+DAEHALD +YAR LGV++  L +SQPD+GEQAL+I + L+RSG
Sbjct: 1   LQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQPDSGEQALDIAEYLIRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            VD+IV+DSVAAL P+AEI+G+MG++  G+QARLMS+ALRK+T+ +S+S   ++FINQ+R
Sbjct: 61  GVDLIVVDSVAALMPQAEIDGEMGDTQIGLQARLMSKALRKITAILSKSNACIMFINQIR 120

Query: 205 MKIGVMFG 212
           MKIG++FG
Sbjct: 121 MKIGLVFG 128


>gi|156564016|ref|YP_001429755.1| RecA [Bacillus phage 0305phi8-36]
 gi|154622713|gb|ABS83593.1| RecA [Bacillus phage 0305phi8-36]
          Length = 457

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 94/253 (37%), Positives = 154/253 (60%), Gaps = 11/253 (4%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQ--SQKTGGTCAFVDAEHALDSIYARKL-GVD 118
           GG P+GRI EI+G  SSGKT+L L TI +   Q      A++++E + D  YAR + G+D
Sbjct: 70  GGIPRGRITEIFGNNSSGKTSLCLETIGEDMEQDPDALWAWLESEESFDPDYARDVHGID 129

Query: 119 LKNLLISQPDT--GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           L  L+         E++++  ++L+RSG +   V++SVA L P+ E+E D+ +S   +QA
Sbjct: 130 LDRLIYVDISLKGAEESIDRLEVLMRSGILSGFVVNSVAGLVPKREVETDLAQSDIALQA 189

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           R+MS+ +RK T+ I +     +FINQ+R  +   FG P  TTGG AL FY+S+R  + ++
Sbjct: 190 RMMSKLMRKWTALIGKKDLYAIFINQLRTDVNSRFGDPNVTTGGRALAFYASLRFGMNKL 249

Query: 237 GSIKDKDSIT---GNQTRVKVVKNKMA--SPFKQVEFDIMYGEGISFFGELIDLGVKASI 291
             ++D D IT   G +   +V KN+    +P+K+ E+ ++YGEG+    E+++    A I
Sbjct: 250 -KLQDSDPITDDDGLKISARVAKNRCVYDNPYKKCEYYVIYGEGVDKLTEIMENVEPAGI 308

Query: 292 VDKSGAWFSFKGQ 304
           + KSG+WF ++ +
Sbjct: 309 MRKSGSWFYYEKE 321


>gi|180050811|gb|ACB87019.1| RecA [Bacteriovorax sp. MANZ3]
          Length = 113

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/109 (72%), Positives = 95/109 (87%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ QK GGT AF+DAEHAL
Sbjct: 5   ISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEHAL 64

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
           D+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++DSVAA
Sbjct: 65  DTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIVDSVAA 113


>gi|37956376|gb|AAP15362.1| RecA [Geobacter thiogenes]
          Length = 114

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/113 (75%), Positives = 98/113 (86%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           FVDAEH LD  YARKLGV   +LL+SQPDTGEQALEI + LVRSGA+DI+VIDSVAAL P
Sbjct: 2   FVDAEHDLDVGYARKLGVRTDDLLVSQPDTGEQALEIAETLVRSGAIDILVIDSVAALVP 61

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           +AEIEG+MG+S  G+QARLMSQALRKLT  IS+S C ++FINQ+RMKIGVMFG
Sbjct: 62  KAEIEGEMGDSHVGLQARLMSQALRKLTGIISKSNCCVIFINQIRMKIGVMFG 114


>gi|71089150|gb|AAZ23653.1| RecA [uncultured Burkholderia sp.]
          Length = 128

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/126 (67%), Positives = 104/126 (82%), Gaps = 1/126 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M LG+  ++ E   VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 4   FGKGSVMWLGACEAV-EDTPVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 62

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            +A+ QK GGT AF+DAEHALD  YA KLGV++  LL+S PDTGEQALEI D LVRSG++
Sbjct: 63  VVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNELLVSHPDTGEQALEIADALVRSGSI 122

Query: 147 DIIVID 152
           D+IVID
Sbjct: 123 DMIVID 128


>gi|157503481|gb|ABV58823.1| RecA [Burkholderia ubonensis]
          Length = 119

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 87/120 (72%), Positives = 101/120 (84%), Gaps = 1/120 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  IAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119


>gi|157503479|gb|ABV58822.1| RecA [Burkholderia vietnamiensis]
          Length = 120

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 86/120 (71%), Positives = 102/120 (85%), Gaps = 1/120 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+
Sbjct: 60  AELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 119


>gi|1710061|sp|P49985|RECA_RUMAL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|927284|gb|AAA73925.1| recombination enzyme [Ruminococcus albus 7]
          Length = 121

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 81/121 (66%), Positives = 101/121 (83%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
            ++AEHALD  YA  LGV + +LL+SQPDTGEQ LEI D L+ SGAVDI+V+DSVAAL P
Sbjct: 1   LIEAEHALDPQYATALGVQINDLLLSQPDTGEQGLEIADALIASGAVDIVVVDSVAALVP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           RAEIEG+MG++  G+QARLMSQALRKL+  I+++K I +FINQ+R K+GVMFG+PETT G
Sbjct: 61  RAEIEGEMGDTHVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTPG 120

Query: 220 G 220
           G
Sbjct: 121 G 121


>gi|294471056|gb|ADE80789.1| recombinase A [Lactococcus raffinolactis]
          Length = 125

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 80/122 (65%), Positives = 104/122 (85%)

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AF+DAEHALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGA+D++VIDSVAAL 
Sbjct: 1   AFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAIDLVVIDSVAALV 60

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           PRAEI+G++G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFGSPETT 
Sbjct: 61  PRAEIDGEIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGSPETTP 120

Query: 219 GG 220
           GG
Sbjct: 121 GG 122


>gi|294471054|gb|ADE80788.1| recombinase A [Lactococcus plantarum]
          Length = 126

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 80/123 (65%), Positives = 103/123 (83%)

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            AF+DA HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGA+D++VIDSVAAL
Sbjct: 1   AAFIDAXHALDPAYAASLGVNIDELLLSQPDSGEQGLEIAGKLIDSGAIDLVVIDSVAAL 60

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
            PRAEI+GD+G+S  G+QAR+MSQA+RKL+SSI+++K I +FINQ+R K+GVMFG+PETT
Sbjct: 61  VPRAEIDGDIGDSHVGLQARMMSQAMRKLSSSINKTKTIAIFINQLREKVGVMFGNPETT 120

Query: 218 TGG 220
            GG
Sbjct: 121 PGG 123


>gi|180050889|gb|ACB87058.1| RecA [Bacteriovorax sp. MANZ1]
          Length = 115

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 82/115 (71%), Positives = 100/115 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G LGLD+ALG+ G P+GRI+E+YGPESSGKTTL LH  A+ QK GGT AF+DAEHAL
Sbjct: 1   ISTGCLGLDLALGVVGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           D+ YA KLGV++ N LISQPD+GEQALEI DMLVR+ AVD++++DSVAALTPRAE
Sbjct: 61  DTYYAEKLGVEVPNTLISQPDSGEQALEIADMLVRTAAVDLLIVDSVAALTPRAE 115


>gi|255018716|ref|ZP_05290842.1| recombinase A [Listeria monocytogenes FSL F2-515]
          Length = 165

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 75/140 (53%), Positives = 108/140 (77%)

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
           K I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR   +K    + GN+T++K
Sbjct: 1   KTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKTKIK 60

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VVKNK+A PF+  E DIMYGEGIS  GEL+D+  +  +++KSG+W+S+K +R+GQGREN+
Sbjct: 61  VVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGRENA 120

Query: 314 KIFLRENIEIAENIESLLRQ 333
           K +L+E+ +I + I   +R+
Sbjct: 121 KQYLKEHTDIRDEISKRVRE 140


>gi|261419497|ref|YP_003253179.1| RecA domain protein [Geobacillus sp. Y412MC61]
 gi|319766314|ref|YP_004131815.1| RecA domain protein [Geobacillus sp. Y412MC52]
 gi|261375954|gb|ACX78697.1| RecA domain protein [Geobacillus sp. Y412MC61]
 gi|317111180|gb|ADU93672.1| RecA domain protein [Geobacillus sp. Y412MC52]
          Length = 132

 Score =  172 bits (437), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 84/122 (68%), Positives = 100/122 (81%), Gaps = 2/122 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  ALE AL QI+R +GKGAIM+LG Q  +   + VV SGSL LDIALG+GG+P+GRIV
Sbjct: 4   DRQAALEQALKQIERQFGKGAIMKLGEQ--VDRKVSVVPSGSLALDIALGVGGYPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD IYA+KLGV++  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTVALHAIAEVQKRGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTG 121

Query: 131 EQ 132
           EQ
Sbjct: 122 EQ 123


>gi|179745304|gb|ACB86879.1| RecA [Burkholderia sp. NGR190]
          Length = 111

 Score =  172 bits (437), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 84/111 (75%), Positives = 96/111 (86%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+
Sbjct: 1   VEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFI 60

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVID
Sbjct: 61  DAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVID 111


>gi|300603358|emb|CBN08584.1| recombinase A [Marichromatium sp. JA328]
          Length = 116

 Score =  172 bits (436), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 80/104 (76%), Positives = 97/104 (93%)

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           +A KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAALTP+AEIEG+MG+S
Sbjct: 13  HAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAALTPKAEIEGEMGDS 72

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
             G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMFGSP
Sbjct: 73  HVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSP 116


>gi|294471044|gb|ADE80783.1| recombinase A [Lactococcus garvieae]
          Length = 126

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 77/123 (62%), Positives = 102/123 (82%)

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            AF+DA HALD +YA  +GVD+  LL+SQPD GEQ L+I + L+ SGAVD++V+DSVAAL
Sbjct: 1   AAFIDAAHALDPVYAAAIGVDIDQLLLSQPDYGEQGLQIAEKLIESGAVDLVVVDSVAAL 60

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
           TPRAEI+G++G+S  G+QAR+MSQA+RKL + I+++K   +FINQ+R K+GVMFGSPETT
Sbjct: 61  TPRAEIDGEIGDSTVGLQARMMSQAMRKLAAGINKTKTTAIFINQLREKVGVMFGSPETT 120

Query: 218 TGG 220
            GG
Sbjct: 121 PGG 123


>gi|180050835|gb|ACB87031.1| RecA [Bacteriovorax sp. PS82B]
          Length = 117

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 85/111 (76%), Positives = 97/111 (87%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           V+S+G LGLD+ALG+GG PKGRI+EIYGPESSGKTTL LH  AQ  K GGT AFVDAEHA
Sbjct: 6   VISTGCLGLDLALGVGGIPKGRIIEIYGPESSGKTTLTLHIAAQCPKQGGTVAFVDAEHA 65

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           LD+ YA KLGVD+ N LISQPD+GEQALEITDMLV SGAVD++++DSVAAL
Sbjct: 66  LDTTYAAKLGVDIPNTLISQPDSGEQALEITDMLVPSGAVDLLIVDSVAAL 116


>gi|295981638|emb|CBL88082.1| recombinase A [Blastochloris gulmargensis]
 gi|295981642|emb|CBL88084.1| recombinase A [Blastochloris sulfoviridis]
          Length = 103

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 80/103 (77%), Positives = 96/103 (93%)

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAALTP+AEIEG+MG+S 
Sbjct: 1   AEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAALTPKAEIEGEMGDSH 60

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
            G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMFGSP
Sbjct: 61  VGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSP 103


>gi|71089108|gb|AAZ23632.1| RecA [uncultured Burkholderia sp.]
          Length = 121

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 82/115 (71%), Positives = 97/115 (84%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
           G   E I+ VS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGT 
Sbjct: 7   GEAVEDIQAVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTA 66

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
           AF+DAEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDS
Sbjct: 67  AFIDAEHALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMIVIDS 121


>gi|180050809|gb|ACB87018.1| RecA [Bacteriovorax sp. MANZ5]
          Length = 113

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/110 (70%), Positives = 95/110 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ QK GGT AF+DAEHAL
Sbjct: 1   ISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           D+ YA KLGV++ N LISQPD+GEQALEI DMLV S AVD++++DSVAAL
Sbjct: 61  DTYYAEKLGVEVPNTLISQPDSGEQALEIADMLVGSAAVDLLIVDSVAAL 110


>gi|2062105|emb|CAB08125.1| RecA [Mycobacterium leprae]
          Length = 131

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/128 (61%), Positives = 104/128 (81%), Gaps = 2/128 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
            + D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+G
Sbjct: 3   QVPDREKALELAMAQIEKNYGKGSVMRLGDE--MCQPISVIPTGSIALDVALGIGGLPRG 60

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHAL+  YA+KLGVD  +LL+SQP
Sbjct: 61  RIVEIYGPESSGKTTVALHAVANAQAVGGVAAFIDAEHALEPEYAKKLGVDTDSLLVSQP 120

Query: 128 DTGEQALE 135
           DTGEQALE
Sbjct: 121 DTGEQALE 128


>gi|163784154|ref|ZP_02179093.1| recombinase A [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880573|gb|EDP74138.1| recombinase A [Hydrogenivirga sp. 128-5-R1-1]
          Length = 148

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 76/137 (55%), Positives = 106/137 (77%), Gaps = 2/137 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KALE ALSQI++ +GKG++M   S     + +E + SGS+ LD+A G+ GFP+G+++E
Sbjct: 14  KRKALETALSQIEKKFGKGSVMTFSSDA--IKTVETIPSGSISLDLATGVNGFPRGKVIE 71

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           ++GPESSGKTTL LH IA++QK GG   F+DAEHA D  YA+ +GV+L++L+ISQPD GE
Sbjct: 72  VFGPESSGKTTLTLHLIAEAQKRGGKAVFIDAEHAFDPKYAKAIGVNLEDLIISQPDYGE 131

Query: 132 QALEITDMLVRSGAVDI 148
           QALEI + L+RSG +D+
Sbjct: 132 QALEIAETLIRSGVIDV 148


>gi|297374126|emb|CBL88079.1| recombinase A [Marichromatium sp. JA439]
          Length = 101

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 79/101 (78%), Positives = 95/101 (94%)

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
           KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAALTP+AEIEG+MG+S  G
Sbjct: 1   KLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAALTPKAEIEGEMGDSHVG 60

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           +QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMFGSP
Sbjct: 61  LQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSP 101


>gi|180050803|gb|ACB87015.1| RecA [Bacteriovorax sp. MNZ3]
          Length = 114

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 79/112 (70%), Positives = 96/112 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ QK GGT AF+DAEHAL
Sbjct: 3   ISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEHAL 62

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           D+ YA KLGV++ N LISQPD+GEQALEI DMLVRS AVD++++D VAAL P
Sbjct: 63  DTYYAEKLGVEVPNTLISQPDSGEQALEIADMLVRSAAVDLLMVDCVAALLP 114


>gi|300603354|emb|CBN08582.1| recombinase A [Marichromatium sp. JA350]
          Length = 103

 Score =  169 bits (427), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 78/103 (75%), Positives = 94/103 (91%)

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GGT AFVDAEHALD +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSV
Sbjct: 1   GGTAAFVDAEHALDPVYAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSV 60

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           AALTP+AEIEG+MG+S  G+QARLMSQALRKLT +I RS C++
Sbjct: 61  AALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCLV 103


>gi|124483981|emb|CAM32808.1| RecA protein [Aeromonas sp. JF2689]
          Length = 116

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 83/116 (71%), Positives = 101/116 (87%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA++QK G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD
Sbjct: 1   IAEAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVD 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           +I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  +  + +FIN +
Sbjct: 61  VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANWLCIFINXI 116


>gi|37956380|gb|AAP15364.1| RecA [Malonomonas rubra]
          Length = 114

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 79/111 (71%), Positives = 99/111 (89%)

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA  LGV   +LL+SQPDTGEQALEIT+MLVRSGA+D++V+DSVAALTPRAE
Sbjct: 4   AEHALDIQYAGHLGVKADDLLVSQPDTGEQALEITEMLVRSGAIDVLVVDSVAALTPRAE 63

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           IEG+MG+S  G+QARLMSQALRKLT+++++S C ++FINQ+RMKIGV+ G+
Sbjct: 64  IEGEMGDSHMGLQARLMSQALRKLTATVAKSNCCIIFINQIRMKIGVIPGN 114


>gi|166714602|gb|ABY88032.1| RecA [Stenotrophomonas sp. LMG 10996]
          Length = 117

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 81/117 (69%), Positives = 98/117 (83%), Gaps = 2/117 (1%)

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           RKLT +I RS  +++FINQ+RMKIGVM    SPETTTGGNALKFY+SVRLDIRR+G+IK 
Sbjct: 1   RKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKK 60

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
            D I GNQT++KVVKNK+A PFKQV  +I+YGEGIS  GELID+GV A +V+K+GAW
Sbjct: 61  GDEIIGNQTKIKVVKNKLAPPFKQVITEILYGEGISREGELIDMGVDAKLVEKAGAW 117


>gi|330685954|gb|EGG97578.1| RecA protein [Staphylococcus epidermidis VCU121]
          Length = 142

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 83/141 (58%), Positives = 108/141 (76%), Gaps = 2/141 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+  +  +++ +GKGA+M+LG            SSGS+ LD ALG+GG+PKGRI+
Sbjct: 4   ERQKALDTVIKNMEKSFGKGAVMKLGDNKGRRV--SSTSSGSVTLDNALGVGGYPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA++QK GG  AF+DAEHALD +YA+ LGVD+ NL +SQPD G
Sbjct: 62  EIYGPESSGKTTVALHAIAETQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHG 121

Query: 131 EQALEITDMLVRSGAVDIIVI 151
           EQ LEI +  VRSGAVDI+V+
Sbjct: 122 EQGLEIAEAFVRSGAVDIVVV 142


>gi|313585638|gb|ADR70961.1| RecA [Helicobacter pylori]
 gi|313585642|gb|ADR70963.1| RecA [Helicobacter pylori]
 gi|313585644|gb|ADR70964.1| RecA [Helicobacter pylori]
 gi|313585646|gb|ADR70965.1| RecA [Helicobacter pylori]
 gi|313585648|gb|ADR70966.1| RecA [Helicobacter pylori]
 gi|313585650|gb|ADR70967.1| RecA [Helicobacter pylori]
 gi|313585652|gb|ADR70968.1| RecA [Helicobacter pylori]
          Length = 109

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 77/109 (70%), Positives = 94/109 (86%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
            + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK
Sbjct: 61  LETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRK 109


>gi|226088433|dbj|BAH36969.1| recombinase A [Lactobacillus sunkii]
          Length = 118

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/118 (66%), Positives = 101/118 (85%)

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGEQ L+ITD LV SGA+DI
Sbjct: 1   AEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLQITDALVTSGAIDI 60

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           +VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +IS++K I +FINQ+R K
Sbjct: 61  VVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREK 118


>gi|302537316|ref|ZP_07289658.1| RecA domain-containing protein [Streptomyces sp. C]
 gi|302446211|gb|EFL18027.1| RecA domain-containing protein [Streptomyces sp. C]
          Length = 121

 Score =  166 bits (421), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 79/123 (64%), Positives = 99/123 (80%), Gaps = 2/123 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M+LG + +  + IEV+ +GS  LDIALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRLGDKPN--DPIEVIPTGSTALDIALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTTL LH +A +QK GGT AFVDAEHALD  YA+ LGVD  NL++SQ
Sbjct: 59  GRVVEIYGPESSGKTTLTLHAVANAQKAGGTVAFVDAEHALDPEYAKALGVDTDNLILSQ 118

Query: 127 PDT 129
           PDT
Sbjct: 119 PDT 121


>gi|213420540|ref|ZP_03353606.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 123

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 81/120 (67%), Positives = 96/120 (80%), Gaps = 2/120 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123


>gi|313585640|gb|ADR70962.1| RecA [Helicobacter pylori]
          Length = 109

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/109 (69%), Positives = 93/109 (85%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL+LH IA+ QK  G CAF+DAEHALD  YA++LGVD +NLL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLSLHIIAECQKNDGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
            + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK
Sbjct: 61  LETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRK 109


>gi|294471050|gb|ADE80786.1| recombinase A [Lactococcus lactis subsp. lactis]
          Length = 123

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/123 (61%), Positives = 101/123 (82%)

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            AF+DAE+ALD  YA+ LGV++  LL+SQPD GEQ L+I + L+ SGAVD++VIDSVAAL
Sbjct: 1   AAFIDAENALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAAL 60

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
            P+AEI+G++G+S  G+QAR+MSQA+RKL   I+++K   +FINQ+R K+GVMFGSPETT
Sbjct: 61  VPKAEIDGEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETT 120

Query: 218 TGG 220
            GG
Sbjct: 121 PGG 123


>gi|180050881|gb|ACB87054.1| RecA [Bacteriovorax sp. T10]
          Length = 118

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/98 (77%), Positives = 86/98 (87%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            PKGRI+EIYGPESSGKTTL LH  A+ QK GGT AFVDAEHALD++YA  LGVD+ N L
Sbjct: 21  VPKGRIIEIYGPESSGKTTLTLHIAAECQKEGGTVAFVDAEHALDTVYASNLGVDIPNTL 80

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           ISQPD+GEQALEI DMLVRSGAVD++++DSVAALTPRA
Sbjct: 81  ISQPDSGEQALEIADMLVRSGAVDLLIVDSVAALTPRA 118


>gi|117530179|ref|YP_851022.1| recA recombinase [Microcystis phage Ma-LMM01]
 gi|117165791|dbj|BAF36099.1| recA recombinase [Microcystis phage Ma-LMM01]
          Length = 354

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 99/276 (35%), Positives = 157/276 (56%), Gaps = 12/276 (4%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LGS  SI E    + SG   LD  LG GG+P G+IVEI G  S GKTTL    ++  Q  
Sbjct: 31  LGSTSSI-EPTTFIPSGIFSLDYVLG-GGWPVGKIVEIAGETSVGKTTLMKQCVSLLQAK 88

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           G   A++D E + +  YAR +G+ +  + + +PDTGE+ ++    L+ SG V I+VIDSV
Sbjct: 89  GYMAAWLDHEKSFEVGYARMMGMQMDQIAMFRPDTGEEGMDSLITLLGSGLVKIVVIDSV 148

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           A +    E+E    ++     ARL+S+ L ++ ++ S++   +V INQ R K+G  +G+P
Sbjct: 149 ANMISAVEVEKGSADATVAQLARLLSKKLPQVVNAASKTGATVVLINQYRTKVG-SYGAP 207

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG- 273
             +TGG AL + ++V+L + R   +K +  ITG    VK  KN++A PF++ E D++   
Sbjct: 208 VGSTGGKALAYNAAVQLRLGRGDPLKQRGVITGMTITVKNTKNRVAIPFREAELDLLLPY 267

Query: 274 --------EGISFFGELIDLGVKASIVDKSGAWFSF 301
                    G+   G+++   VK  IV +SGA+++ 
Sbjct: 268 TGPNGDLLAGVDLVGDIVRQAVKTGIVSRSGAFYTL 303


>gi|180050863|gb|ACB87045.1| RecA [Bacteriovorax sp. MIA4]
          Length = 116

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 76/98 (77%), Positives = 86/98 (87%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            PKGRI+EIYGPESSGKTTL LH  A+ QK GGT AFVDAEHALD++YA  LGVD+ N L
Sbjct: 19  VPKGRIIEIYGPESSGKTTLTLHIAAECQKEGGTVAFVDAEHALDTVYASNLGVDIPNTL 78

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           ISQPD+GEQALEI DMLVRSGAVD++++DSVAALTPRA
Sbjct: 79  ISQPDSGEQALEIADMLVRSGAVDLLIVDSVAALTPRA 116


>gi|37956384|gb|AAP15365.1| RecA [Pelobacter acidigallici]
          Length = 116

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/111 (71%), Positives = 96/111 (86%)

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA+ LGV   +LL+SQPDTGEQALEIT+MLVRSGA+D++V+DSVAALTPRA 
Sbjct: 6   AEHALDIQYAQHLGVKADDLLVSQPDTGEQALEITEMLVRSGAIDVLVVDSVAALTPRAG 65

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           IEG+MG+S  G+QARLMSQALRKLT  +S+S C ++FINQ+RMKIG M G+
Sbjct: 66  IEGEMGDSHMGLQARLMSQALRKLTGIVSKSNCCIIFINQIRMKIGFMPGN 116


>gi|180050829|gb|ACB87028.1| RecA [Bacteriovorax sp. GSL4E]
          Length = 111

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 78/108 (72%), Positives = 92/108 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G LGLD+ALG+GG P GRI+E+YGPESSGKTTL LH  A+ QK GGT AF+DAEHAL
Sbjct: 4   ISTGCLGLDLALGVGGIPPGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEHAL 63

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
           D+ YA KLGV L N LISQPD+GEQALEI DMLVRS AVD++++DSVA
Sbjct: 64  DTYYAEKLGVHLPNTLISQPDSGEQALEIADMLVRSAAVDLLIVDSVA 111


>gi|159461915|gb|ABW96968.1| recombinase A [Burkholderia ubonensis]
 gi|159461917|gb|ABW96969.1| recombinase A [Burkholderia ubonensis]
 gi|159461919|gb|ABW96970.1| recombinase A [Burkholderia ubonensis]
 gi|159461921|gb|ABW96971.1| recombinase A [Burkholderia ubonensis]
 gi|159461923|gb|ABW96972.1| recombinase A [Burkholderia ubonensis]
          Length = 112

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 80/108 (74%), Positives = 91/108 (84%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
           G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT 
Sbjct: 5   GEATEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTA 64

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 65  AFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 112


>gi|294471062|gb|ADE80792.1| recombinase A [Lactococcus lactis]
          Length = 126

 Score =  162 bits (410), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 75/123 (60%), Positives = 100/123 (81%)

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            AF+DA +ALD  YA+ LGV++  LL+SQPD GEQ L+I + L+ SGAVD++VIDSVAAL
Sbjct: 1   AAFIDAANALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAAL 60

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
            P+AEI+G++G+S  G+QAR+MSQA+RKL   I+++K   +FINQ+R K+GVMFGSPETT
Sbjct: 61  VPKAEIDGEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETT 120

Query: 218 TGG 220
            GG
Sbjct: 121 PGG 123


>gi|323424256|emb|CBZ39275.1| recombinase A [Thiorhodococcus sp. JA395]
          Length = 101

 Score =  162 bits (410), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 76/96 (79%), Positives = 89/96 (92%)

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           + +LL+SQPDTGEQALEITDMLVRSGAVDI+V+DSVAALTP+AEIEG+MG+S  G+QARL
Sbjct: 6   MNDLLVSQPDTGEQALEITDMLVRSGAVDIVVVDSVAALTPKAEIEGEMGDSHVGLQARL 65

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           MSQALRKLT +I RS C ++FINQ+RMKIGVMFGSP
Sbjct: 66  MSQALRKLTGNIKRSNCCVIFINQIRMKIGVMFGSP 101


>gi|315258099|gb|ADT91637.1| recombinase A [Lactococcus lactis subsp. hordniae]
 gi|315258103|gb|ADT91639.1| recombinase A [Lactococcus lactis subsp. cremoris]
          Length = 126

 Score =  162 bits (410), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 75/123 (60%), Positives = 100/123 (81%)

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            AF+DA +ALD  YA+ LGV++  LL+SQPD GEQ L+I + L+ SGAVD++VIDSVAAL
Sbjct: 1   AAFIDAXNALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAAL 60

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
            P+AEI+G++G+S  G+QAR+MSQA+RKL   I+++K   +FINQ+R K+GVMFGSPETT
Sbjct: 61  VPKAEIDGEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETT 120

Query: 218 TGG 220
            GG
Sbjct: 121 PGG 123


>gi|294471046|gb|ADE80784.1| recombinase A [Lactococcus lactis subsp. cremoris]
          Length = 125

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/122 (61%), Positives = 100/122 (81%)

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AF+DA +ALD  YA+ LGV++  LL+SQPD GEQ L+I + L+ SGAVD++VIDSVAAL 
Sbjct: 1   AFIDAXNALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAALV 60

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           P+AEI+G++G+S  G+QAR+MSQA+RKL   I+++K   +FINQ+R K+GVMFGSPETT 
Sbjct: 61  PKAEIDGEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETTP 120

Query: 219 GG 220
           GG
Sbjct: 121 GG 122


>gi|294471058|gb|ADE80790.1| recombinase A [Lactococcus lactis]
          Length = 126

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/122 (61%), Positives = 100/122 (81%)

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AF+DA +ALD  YA+ LGV++  LL+SQPD GEQ L+I + L+ SGAVD++VIDSVAAL 
Sbjct: 1   AFIDAXNALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAALV 60

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           P+AEI+G++G+S  G+QAR+MSQA+RKL   I+++K   +FINQ+R K+GVMFGSPETT 
Sbjct: 61  PKAEIDGEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETTP 120

Query: 219 GG 220
           GG
Sbjct: 121 GG 122


>gi|166714595|gb|ABY88029.1| RecA [Stenotrophomonas sp. LMG 10879]
          Length = 114

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 78/114 (68%), Positives = 95/114 (83%), Gaps = 2/114 (1%)

Query: 187 TSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           T +I RS  ++VFINQ+RMKIGVM    SPE TTGGNALKFY+SVRLDIRR+G+IK  D 
Sbjct: 1   TGNIKRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDE 60

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           I GNQT++KVVKNK+A PFKQV  +I+YGEGIS  GELID+GV+A +V+K+GAW
Sbjct: 61  IIGNQTKIKVVKNKLAPPFKQVITEILYGEGISREGELIDMGVEAKLVEKAGAW 114


>gi|180050865|gb|ACB87046.1| RecA [Bacteriovorax sp. MIA3]
          Length = 114

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 77/107 (71%), Positives = 90/107 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  +S+G LGLD+ L IGG PKGRI+EIYGPESSGKTTL LH  A+ QK GGT AFVDAE
Sbjct: 1   IPAISTGCLGLDLGLAIGGVPKGRIIEIYGPESSGKTTLTLHIAAECQKEGGTVAFVDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           HALD++YA  LGVD+ N LISQPD+GEQALEI DMLVRSGAVD++++
Sbjct: 61  HALDTVYASNLGVDIPNTLISQPDSGEQALEIADMLVRSGAVDLLIV 107


>gi|290795175|gb|ADD64602.1| RecA recombinase [Vibrio crassostreae]
          Length = 115

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 81/117 (69%), Positives = 93/117 (79%), Gaps = 2/117 (1%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           IA +QK G TCAFVDAEHAL  IYA+KLGVD+  LL+SQPDTGEQALEI D L RSG
Sbjct: 59  IAAAQKVGKTCAFVDAEHALYPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSG 115


>gi|295981640|emb|CBL88083.1| recombinase A [Blastochloris viridis]
          Length = 102

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 75/93 (80%), Positives = 88/93 (94%)

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAALTP+AEIEG+MG+S  G+QARLMSQ
Sbjct: 10  LLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQ 69

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           ALRKLT +I RS C++VFINQ+RMKIGVMFGSP
Sbjct: 70  ALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSP 102


>gi|262272837|gb|ACY40638.1| RecA [Leptotrichia sp. HKU24]
          Length = 102

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 76/102 (74%), Positives = 91/102 (89%)

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AF+DAEHALD +YA+ LGV++  LLISQPDTGEQALEI+DMLVRSGA+D+IV+
Sbjct: 1   QKAGGTVAFIDAEHALDPVYAKALGVNIDELLISQPDTGEQALEISDMLVRSGAMDVIVV 60

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           DSVAAL P+AEIEG+MG+   G+QARLMS+ALRKLT SIS+S
Sbjct: 61  DSVAALVPKAEIEGEMGDQQMGLQARLMSKALRKLTGSISKS 102


>gi|83595207|gb|ABC25058.1| recombinase A [Lactobacillus sakei]
          Length = 114

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 76/114 (66%), Positives = 96/114 (84%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           +D  YA  LGV++ +LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEIEG+
Sbjct: 1   MDPKYATALGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDILVVDSVAALVPRAEIEGE 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
           MG++  G+QARLM QALRKL+ +I+++K I +FINQ+R K+ VMFG+PETTTGG
Sbjct: 61  MGDAHVGLQARLMPQALRKLSGTINKTKTIALFINQIREKVDVMFGNPETTTGG 114


>gi|166714604|gb|ABY88033.1| RecA [Stenotrophomonas sp. LMG 11000]
          Length = 117

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 78/117 (66%), Positives = 94/117 (80%), Gaps = 2/117 (1%)

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           RKL  +I     + +FINQ+RMKIGVM    SPETTTGGNALKFY+SVRLDIRR+G+IK 
Sbjct: 1   RKLRGNIKLPNTLEIFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKK 60

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
            D I GNQT++KVVKNK+A PFKQV  +I+YGEGIS  GELID+GV A +V+K+GAW
Sbjct: 61  GDEIIGNQTKIKVVKNKLAPPFKQVITEILYGEGISREGELIDMGVDAKLVEKAGAW 117


>gi|281491745|ref|YP_003353725.1| recombinase recA, C-terminal fragement [Lactococcus lactis subsp.
           lactis KF147]
 gi|281375459|gb|ADA64969.1| Recombinase RecA, C-terminal fragement [Lactococcus lactis subsp.
           lactis KF147]
          Length = 200

 Score =  159 bits (402), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 79/195 (40%), Positives = 133/195 (68%), Gaps = 3/195 (1%)

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
            V++GA D+IV+DSVAALTP +EI+G    S+PG QA++MS+ L KL S ++++K +++F
Sbjct: 5   FVKTGAFDLIVVDSVAALTPASEIDG---VSIPGQQAKMMSEQLSKLVSKVNQTKTVIIF 61

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           INQ+R  +  +F + ETT GG+ALKFYSSVR++++    IKD     G +T +  VKNK+
Sbjct: 62  INQVRSTMSGLFLNKETTPGGSALKFYSSVRIEVKSGEKIKDGIDTIGKKTTLHTVKNKV 121

Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
           ++P+K+     ++G+G S   +++ L ++  +V K   W+SF GQ+LG+G  + K +L  
Sbjct: 122 SAPYKKPSVINVFGDGFSQEIDVVTLAIQMGVVKKMNEWYSFNGQKLGRGIFSVKEYLAS 181

Query: 320 NIEIAENIESLLRQN 334
           +  I E ++++ R++
Sbjct: 182 HQSIFETLKNITRES 196


>gi|65321106|ref|ZP_00394065.1| COG0468: RecA/RadA recombinase [Bacillus anthracis str. A2012]
          Length = 112

 Score =  159 bits (401), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 76/107 (71%), Positives = 94/107 (87%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           +D +YA+KLGV++  LL+SQPDTGEQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGD
Sbjct: 1   MDPVYAQKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGD 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           MG+S  G+QARLMSQALRKL+ +I++SK I +FINQ+R K+GVMFG+
Sbjct: 61  MGDSHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGN 107


>gi|157503483|gb|ABV58824.1| RecA [Burkholderia ubonensis]
          Length = 115

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 79/111 (71%), Positives = 91/111 (81%), Gaps = 1/111 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 5   GKGSIMRMG-DGEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 63

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           IA+    GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD
Sbjct: 64  IAELHNIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITD 114


>gi|294471060|gb|ADE80791.1| recombinase A [Lactococcus lactis]
          Length = 121

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 73/120 (60%), Positives = 98/120 (81%)

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            AF+DA +ALD  YA+ LGV++  LL+SQPD GEQ L+I + L+ SGAVD++VIDSVAAL
Sbjct: 1   AAFIDAANALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAAL 60

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
            P+AEI+G++G+S  G+QAR+MSQA+RKL   I+++K   +FINQ+R K+GVMFGSPETT
Sbjct: 61  VPKAEIDGEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETT 120


>gi|258677610|gb|ACV87529.1| RecA [uncultured Burkholderia sp.]
          Length = 100

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 74/100 (74%), Positives = 87/100 (87%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           GLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA 
Sbjct: 1   GLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAG 60

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
           KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDS
Sbjct: 61  KLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMIVIDS 100


>gi|33087805|gb|AAP93033.1| recombination protein A [Yersinia enterocolitica]
          Length = 101

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 76/100 (76%), Positives = 88/100 (88%)

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 1   EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 60

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S
Sbjct: 61  EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDS 100


>gi|258677614|gb|ACV87531.1| RecA [uncultured Burkholderia sp.]
          Length = 100

 Score =  156 bits (394), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 74/100 (74%), Positives = 87/100 (87%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           GLDIALG+GG P+GR+VEIYGPESSGKTTL L   A+ QK GGT AF+DAEHALD  YA+
Sbjct: 1   GLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVGAEMQKLGGTAAFIDAEHALDIQYAQ 60

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
           KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDS
Sbjct: 61  KLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMIVIDS 100


>gi|291246123|gb|ADD85186.1| RecA [Borrelia recurrentis]
          Length = 109

 Score =  155 bits (393), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 72/109 (66%), Positives = 96/109 (88%)

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           V++  L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAAL P+AEI+G+MG++  G+QA
Sbjct: 1   VNINELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGLQA 60

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           RLMS+ALRK+T+ +S+S   ++FINQ+RMKIG++FGSPETTTGGNALKF
Sbjct: 61  RLMSKALRKITAILSKSNACIMFINQIRMKIGLVFGSPETTTGGNALKF 109


>gi|85816339|gb|ABC84479.1| homologous recombination factor [Streptococcus suis]
          Length = 133

 Score =  155 bits (393), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/131 (54%), Positives = 100/131 (76%), Gaps = 4/131 (3%)

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK- 240
           A+RKL +SI+++K + +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+D+R    IK 
Sbjct: 1   AMRKLGASINKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVRGNTQIKG 60

Query: 241 ---DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
               KD   G +T+VK+VKNK+A PFK+   +IMYGEGIS  GELI++G    I+ K+GA
Sbjct: 61  TGDKKDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGA 120

Query: 298 WFSFKGQRLGQ 308
           W+S+ G+++GQ
Sbjct: 121 WYSYNGEKIGQ 131


>gi|180050875|gb|ACB87051.1| RecA [Bacteriovorax sp. T9]
          Length = 112

 Score =  155 bits (393), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 72/94 (76%), Positives = 82/94 (87%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            PKGRI+EIYGPESSGKTTL LH  A+ QK GGT AFVDAEHALD++YA  LGVD+ N L
Sbjct: 19  VPKGRIIEIYGPESSGKTTLTLHIAAECQKEGGTVAFVDAEHALDTVYASNLGVDIPNTL 78

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           ISQPD+GEQALEI DMLVRSGAVD++++DSVAAL
Sbjct: 79  ISQPDSGEQALEIADMLVRSGAVDLLIVDSVAAL 112


>gi|116620139|ref|YP_822295.1| RecA domain-containing protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116223301|gb|ABJ82010.1| RecA domain protein [Candidatus Solibacter usitatus Ellin6076]
          Length = 248

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/230 (39%), Positives = 141/230 (61%), Gaps = 12/230 (5%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
             SSG   LD ALG GG P+G++VE YGP   GKTTLA+   A +Q  G TCA++DA+  
Sbjct: 27  CFSSGFQALDEALG-GGLPRGQMVEFYGPSGCGKTTLAIQIAAHAQAGGLTCAWIDADRT 85

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
            D+ YA  LG  +  + ++QPD+ E+ LE+T  L+ SGAVD++++DS AAL P+ E+E  
Sbjct: 86  FDAAYAAHLGAAVDRIPVAQPDSAEEGLEVTRALIDSGAVDLVIVDSAAALVPKLELEAG 145

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           +G    G+ +R++S  LR L  +++R+   +VF+NQ+R +     GS ET+ GG  LK +
Sbjct: 146 IGYYSKGLHSRVLSSGLRNLRRALARTGACVVFLNQVRNRPS--GGSGETSAGGPPLKLF 203

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276
           ++VRL +           + G + R++V+KNK+A+     E + + G G 
Sbjct: 204 AAVRLAL---------TPLEGTRLRLRVLKNKVAAQTSGRELEWVRGSGF 244


>gi|158631822|gb|ABW75016.1| RecA [Sinorhizobium sp. CCBAU 83317]
          Length = 165

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/99 (76%), Positives = 84/99 (84%), Gaps = 1/99 (1%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GSLG   + G  G PKGRI+EIYGPESSGKTTLAL TIA++QK GG   FVDAEHALD 
Sbjct: 6   TGSLG-STSRGNSGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGISGFVDAEHALDP 64

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           +YARKLGVDL+NLLIS PDTGEQALEITD LVRSGA+DI
Sbjct: 65  VYARKLGVDLENLLISHPDTGEQALEITDTLVRSGAIDI 103


>gi|124483935|emb|CAM32785.1| RecA protein [Aeromonas sp. V168]
          Length = 96

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/96 (78%), Positives = 85/96 (88%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA++QK G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD
Sbjct: 1   IAEAQKKGKTCAFVDAEHALDPIYAAKLGVNVXDLLISQPDTGEQALEIYDMLVRSNAVD 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +I++DSVAALTP AE EGDMG+S  G+QARLMSQAL
Sbjct: 61  VIIVDSVAALTPXAEXEGDMGDSHVGLQARLMSQAL 96


>gi|14579057|gb|AAK69130.1| RecA [Bacteroides uniformis]
          Length = 101

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/101 (72%), Positives = 86/101 (85%)

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           DAEHA D  YA KLGVD+ NLLISQPD GEQAL+I D L+ S A+DIIVIDSVAALTP+A
Sbjct: 1   DAEHAFDRFYAAKLGVDVYNLLISQPDNGEQALDIADQLIHSSAIDIIVIDSVAALTPKA 60

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           EIEGDMGE+  G+QARLMSQALRKLTS++S+++   +FINQ
Sbjct: 61  EIEGDMGENKVGLQARLMSQALRKLTSAVSKTRTTCIFINQ 101


>gi|255025015|ref|ZP_05297001.1| recombinase A [Listeria monocytogenes FSL J1-208]
          Length = 129

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 80/135 (59%), Positives = 99/135 (73%), Gaps = 7/135 (5%)

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I 
Sbjct: 1   EALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIA 60

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR   +K    + GN       KN
Sbjct: 61  IFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGN-------KN 113

Query: 258 KMASPFKQVEFDIMY 272
           K  S  KQ    I Y
Sbjct: 114 KNQSCEKQGSSSIPY 128


>gi|14279884|gb|AAK58786.1| RecA [Bacteroides fragilis]
 gi|14279886|gb|AAK58787.1| RecA [Bacteroides fragilis]
 gi|14279888|gb|AAK58788.1| RecA [Bacteroides fragilis]
 gi|14279890|gb|AAK58789.1| RecA [Bacteroides fragilis]
 gi|14279892|gb|AAK58790.1| RecA [Bacteroides fragilis]
 gi|14279894|gb|AAK58791.1| RecA [Bacteroides fragilis]
 gi|14279896|gb|AAK58792.1| RecA [Bacteroides fragilis]
 gi|14279898|gb|AAK58793.1| RecA [Bacteroides fragilis]
 gi|14279900|gb|AAK58794.1| RecA [Bacteroides fragilis]
 gi|14279902|gb|AAK58795.1| RecA [Bacteroides fragilis]
 gi|14279904|gb|AAK58796.1| RecA [Bacteroides fragilis]
 gi|14279906|gb|AAK58797.1| RecA [Bacteroides fragilis]
 gi|14279908|gb|AAK58798.1| RecA [Bacteroides fragilis]
 gi|14279910|gb|AAK58799.1| RecA [Bacteroides fragilis]
 gi|14279912|gb|AAK58800.1| RecA [Bacteroides fragilis]
 gi|14279914|gb|AAK58801.1| RecA [Bacteroides fragilis]
 gi|14279916|gb|AAK58802.1| RecA [Bacteroides fragilis]
 gi|14279918|gb|AAK58803.1| RecA [Bacteroides fragilis]
 gi|14279920|gb|AAK58804.1| RecA [Bacteroides fragilis]
 gi|14279924|gb|AAK58806.1| RecA [Bacteroides fragilis]
 gi|14279926|gb|AAK58807.1| RecA [Bacteroides fragilis]
 gi|14279928|gb|AAK58808.1| RecA [Bacteroides fragilis]
 gi|14279930|gb|AAK58809.1| RecA [Bacteroides fragilis]
 gi|14279932|gb|AAK58810.1| RecA [Bacteroides fragilis]
 gi|14279934|gb|AAK58811.1| RecA [Bacteroides fragilis]
 gi|14279936|gb|AAK58812.1| RecA [Bacteroides fragilis]
 gi|14279938|gb|AAK58813.1| RecA [Bacteroides fragilis]
 gi|14279940|gb|AAK58814.1| RecA [Bacteroides fragilis]
 gi|14279942|gb|AAK58815.1| RecA [Bacteroides fragilis]
 gi|14279944|gb|AAK58816.1| RecA [Bacteroides fragilis]
 gi|14279946|gb|AAK58817.1| RecA [Bacteroides fragilis]
 gi|14279948|gb|AAK58818.1| RecA [Bacteroides fragilis]
 gi|14279950|gb|AAK58819.1| RecA [Bacteroides fragilis]
 gi|14279952|gb|AAK58820.1| RecA [Bacteroides fragilis]
 gi|14279954|gb|AAK58821.1| RecA [Bacteroides fragilis]
 gi|14279956|gb|AAK58822.1| RecA [Bacteroides fragilis]
 gi|14279958|gb|AAK58823.1| RecA [Bacteroides fragilis]
 gi|14279960|gb|AAK58824.1| RecA [Bacteroides fragilis]
 gi|14279962|gb|AAK58825.1| RecA [Bacteroides fragilis]
 gi|14279964|gb|AAK58826.1| RecA [Bacteroides fragilis]
 gi|14279966|gb|AAK58827.1| RecA [Bacteroides fragilis]
 gi|14279968|gb|AAK58828.1| RecA [Bacteroides fragilis]
 gi|14279970|gb|AAK58829.1| RecA [Bacteroides fragilis]
 gi|14279972|gb|AAK58830.1| RecA [Bacteroides fragilis]
          Length = 101

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 71/101 (70%), Positives = 86/101 (85%)

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           DAEHA D  YA KLGVD+ NL ISQPD GEQALEI + L+RS A+DIIV+DSVAALTP+A
Sbjct: 1   DAEHAFDRFYAAKLGVDVDNLFISQPDNGEQALEIAEQLIRSSAIDIIVVDSVAALTPKA 60

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           EIEGDMG++  G+QARLMSQALRKLTS++S+++   +FINQ
Sbjct: 61  EIEGDMGDNKVGLQARLMSQALRKLTSAVSKTRTTCIFINQ 101


>gi|264665855|gb|ACY70991.1| recombinase A [Tissierella creatinini]
          Length = 120

 Score =  152 bits (384), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 82/120 (68%), Positives = 105/120 (87%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F++AEHALD  YA KLGV +++L+ISQPDTGEQALEIT+ LVRSGAVD++V+DSVAAL P
Sbjct: 1   FIEAEHALDPAYAEKLGVKIEDLIISQPDTGEQALEITEALVRSGAVDVVVVDSVAALVP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           +AEI+G+MG+S  G+QARLMSQALRKL  ++++S   ++FINQ+R KIGVMFG+PETT G
Sbjct: 61  KAEIDGEMGDSHMGLQARLMSQALRKLAGAVNKSNSTIIFINQLREKIGVMFGNPETTPG 120


>gi|15027117|emb|CAC44778.1| RecA protein [Lactobacillus plantarum]
          Length = 107

 Score =  152 bits (384), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 71/107 (66%), Positives = 92/107 (85%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YA  LGV++ +LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEIEG+
Sbjct: 1   LDPVYAEHLGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDILVVDSVAALVPRAEIEGE 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           MG++  G+QARLMSQALRKL+ +++++K I +FINQ+R K+GVMFG+
Sbjct: 61  MGDAHAGLQARLMSQALRKLSGTLNKTKTIALFINQIREKVGVMFGN 107


>gi|15026989|emb|CAC44769.1| RecA protein [Lactobacillus sp. NIRD-P2]
 gi|15027137|emb|CAC44773.1| RecA protein [Lactobacillus paraplantarum]
          Length = 107

 Score =  152 bits (384), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 72/107 (67%), Positives = 92/107 (85%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD IYA  LGV++ +LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEIEG+
Sbjct: 1   LDPIYAEHLGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDILVVDSVAALVPRAEIEGE 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           MG++  G+QARLMSQALRKL+ +++++K I +FINQ+R K+GVMFG+
Sbjct: 61  MGDAHVGLQARLMSQALRKLSGTLNKTKTIALFINQIREKVGVMFGN 107


>gi|282467|pir||A42721 recombination protein recA - Clostridium acetobutylicum  (fragment)
 gi|144901|gb|AAA23273.1| recombination and repair protein [Clostridium acetobutylicum]
          Length = 104

 Score =  152 bits (383), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 69/103 (66%), Positives = 90/103 (87%)

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA+KLGVD+ +L+ISQPDTGEQ LEI + LVRSGA+D++V+DSVAAL P+AEIEG+MG+S
Sbjct: 2   YAQKLGVDVDSLIISQPDTGEQGLEIAEALVRSGAIDVLVVDSVAALVPKAEIEGEMGDS 61

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
             G+QARLMSQALRKL  +I+++ C+ +FINQ+R K+G MFGS
Sbjct: 62  HIGLQARLMSQALRKLAGTINKTNCVAIFINQLREKLGFMFGS 104


>gi|14279922|gb|AAK58805.1| RecA [Bacteroides fragilis]
          Length = 101

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/101 (69%), Positives = 85/101 (84%)

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           DAEHA D  YA KLGVD+ NL ISQPD GEQALEI + L+RS A+DIIV+DSVAALTP+A
Sbjct: 1   DAEHAFDRFYAAKLGVDVDNLFISQPDNGEQALEIAEQLIRSSAIDIIVVDSVAALTPKA 60

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           EIEGDMG++  G+QARLMSQA RKLTS++S+++   +FINQ
Sbjct: 61  EIEGDMGDNKVGLQARLMSQAFRKLTSAVSKTRTTCIFINQ 101


>gi|15027133|emb|CAC44776.1| RecA protein [Lactobacillus pentosus]
 gi|15027135|emb|CAC44779.1| RecA protein [Lactobacillus plantarum]
 gi|15027185|emb|CAC44777.1| RecA protein [Lactobacillus pentosus]
 gi|15027187|emb|CAC44780.1| RecA protein [Lactobacillus plantarum]
          Length = 107

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 71/107 (66%), Positives = 92/107 (85%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YA  LGV++ +LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEIEG+
Sbjct: 1   LDPVYAEHLGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDILVVDSVAALVPRAEIEGE 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           MG++  G+QARLMSQALRKL+ +++++K I +FINQ+R K+GVMFG+
Sbjct: 61  MGDAHVGLQARLMSQALRKLSGTLNKTKTIALFINQIREKVGVMFGN 107


>gi|70724318|gb|AAZ07708.1| RecA [Lactobacillus buchneri]
          Length = 102

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/102 (69%), Positives = 89/102 (87%)

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA  LGV++ +LL+SQPDTGEQ L+ITD LV SGA+DI+VIDSVAAL PRAEIEG+MG++
Sbjct: 1   YAEHLGVNIDDLLLSQPDTGEQGLQITDALVTSGAIDIVVIDSVAALVPRAEIEGEMGDA 60

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
             G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG
Sbjct: 61  HVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFG 102


>gi|315258101|gb|ADT91638.1| recombinase A [Lactococcus lactis subsp. lactis]
          Length = 114

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/114 (61%), Positives = 93/114 (81%)

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA+ LGV++  LL+SQPD GEQ L+I + L+ SGAVD++VIDSVAAL P+AEI+G
Sbjct: 1   ALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAALVPKAEIDG 60

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           ++G+S  G+QAR+MSQA+RKL   I+++K   +FINQ+R K+GVMFGSPETT G
Sbjct: 61  EIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETTPG 114


>gi|15027119|emb|CAC44771.1| RecA protein [Lactobacillus paraplantarum]
          Length = 107

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 71/107 (66%), Positives = 91/107 (85%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD IYA  LGV++ +LL+SQPD GEQ LEI D LV SGAVDI+V+DSVAAL PRAEIEG+
Sbjct: 1   LDPIYAEHLGVNIDDLLLSQPDIGEQGLEIADALVSSGAVDILVVDSVAALVPRAEIEGE 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           MG++  G+QARLMSQALRKL+ +++++K I +FINQ+R K+GVMFG+
Sbjct: 61  MGDAHVGLQARLMSQALRKLSGTLNKTKTIALFINQIREKVGVMFGN 107


>gi|291246135|gb|ADD85192.1| RecA [Borrelia recurrentis]
          Length = 111

 Score =  149 bits (376), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 68/103 (66%), Positives = 93/103 (90%)

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           L+I + L+RSG VD+IV+DSVAAL P+AEI+G+MG++  G+QARLMS+ALRK+T+ +S+S
Sbjct: 1   LDIAEYLIRSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGLQARLMSKALRKITAILSKS 60

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
              ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V
Sbjct: 61  NACIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKV 103


>gi|15027141|emb|CAC44774.1| RecA protein [Lactobacillus paracasei subsp. paracasei]
 gi|15027143|emb|CAC44775.1| RecA protein [Lactobacillus paracasei subsp. paracasei]
          Length = 107

 Score =  149 bits (376), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 72/107 (67%), Positives = 90/107 (84%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           +D  YA  LGV++  LL+SQPDTGEQ LEI D LV SGA+DI+VIDSVAAL PRAEIEGD
Sbjct: 1   MDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGD 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           MG++  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+G++FGS
Sbjct: 61  MGDAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIIFGS 107


>gi|551851|gb|AAA24782.1| sequence derived from a PCR product [Enterococcus faecalis]
          Length = 102

 Score =  149 bits (376), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 72/102 (70%), Positives = 86/102 (84%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F+DAEHALD  YA KLGV++  LL+SQPDTGEQ LEI D LV SGA+DI+VIDSVAAL P
Sbjct: 1   FIDAEHALDPQYAEKLGVNIDELLLSQPDTGEQGLEIADALVSSGAIDIVVIDSVAALVP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RAEI+G+MG S  G+QARLMSQALRKL+ SI+++K I +FIN
Sbjct: 61  RAEIDGEMGASHVGLQARLMSQALRKLSGSINKTKTIAIFIN 102


>gi|312260891|emb|CBH51617.1| recombinase A [Marichromatium sp. JA121]
          Length = 117

 Score =  149 bits (376), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 75/111 (67%), Positives = 92/111 (82%), Gaps = 5/111 (4%)

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           VDAEHALD +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAALTP+
Sbjct: 1   VDAEHALDPVYAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAALTPK 60

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN---QMRMKIG 208
           AEIEG+MG+S  G+QARLMSQALRKLT         L + +   ++RMKIG
Sbjct: 61  AEIEGEMGDSHVGLQARLMSQALRKLTR--QHQALQLAWWSSSTRIRMKIG 109


>gi|70724320|gb|AAZ07709.1| RecA [Lactobacillus buchneri]
 gi|70724322|gb|AAZ07710.1| RecA [Weissella confusa]
          Length = 101

 Score =  149 bits (375), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 70/101 (69%), Positives = 88/101 (87%)

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA  LGV++ +LL+SQPDTGEQ L+ITD LV SGA+DI+VIDSVAAL PRAEIEG+MG++
Sbjct: 1   YAEHLGVNIDDLLLSQPDTGEQGLQITDALVTSGAIDIVVIDSVAALVPRAEIEGEMGDA 60

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
             G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMF
Sbjct: 61  HVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMF 101


>gi|153082|gb|AAA26667.1| recombination and repair protein [Staphylococcus aureus]
          Length = 104

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 69/103 (66%), Positives = 87/103 (84%)

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA+ LGVD+ NL +SQPD GEQ LEI +  VRSGAVDI+V+DSVAALTP+AEIEG+MG++
Sbjct: 2   YAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDT 61

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
             G+QARLMSQALRKL+ +IS+S    +FINQ+R K+GVMFG+
Sbjct: 62  HVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGN 104


>gi|15026991|emb|CAC44770.1| RecA protein [Lactobacillus casei ATCC 334]
          Length = 107

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/107 (66%), Positives = 90/107 (84%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           +D  YA  LGV++  LL+SQPDTGEQ LEI D LV SGA+DI+VIDSVAAL PRAEIEGD
Sbjct: 1   MDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGD 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           MG++  G+QARLMSQALRKL+ SI++++ I +FINQ+R K+G++FGS
Sbjct: 61  MGDAHVGLQARLMSQALRKLSGSINKTETIALFINQIREKVGIIFGS 107


>gi|225006878|dbj|BAH29215.1| recombinase [Clostridium perfringens]
 gi|225006880|dbj|BAH29216.1| recombinase [Clostridium perfringens]
 gi|225006882|dbj|BAH29217.1| recombinase [Clostridium perfringens]
 gi|225006884|dbj|BAH29218.1| recombinase [Clostridium perfringens]
 gi|225006886|dbj|BAH29219.1| recombinase [Clostridium perfringens]
 gi|225006888|dbj|BAH29220.1| recombinase [Clostridium perfringens]
 gi|225006890|dbj|BAH29221.1| recombinase [Clostridium perfringens]
 gi|225006892|dbj|BAH29222.1| recombinase [Clostridium perfringens]
 gi|225006894|dbj|BAH29223.1| recombinase [Clostridium perfringens]
 gi|225006896|dbj|BAH29224.1| recombinase [Clostridium perfringens]
 gi|225006898|dbj|BAH29225.1| recombinase [Clostridium perfringens]
 gi|225006900|dbj|BAH29226.1| recombinase [Clostridium perfringens]
 gi|225006902|dbj|BAH29227.1| recombinase [Clostridium perfringens]
 gi|225006904|dbj|BAH29228.1| recombinase [Clostridium perfringens]
 gi|225006906|dbj|BAH29229.1| recombinase [Clostridium perfringens]
 gi|225006908|dbj|BAH29230.1| recombinase [Clostridium perfringens]
 gi|225006910|dbj|BAH29231.1| recombinase [Clostridium perfringens]
 gi|225006912|dbj|BAH29232.1| recombinase [Clostridium perfringens]
 gi|225006914|dbj|BAH29233.1| recombinase [Clostridium perfringens]
 gi|225006916|dbj|BAH29234.1| recombinase [Clostridium perfringens]
 gi|225006918|dbj|BAH29235.1| recombinase [Clostridium perfringens]
 gi|225006920|dbj|BAH29236.1| recombinase [Clostridium perfringens]
 gi|225006922|dbj|BAH29237.1| recombinase [Clostridium perfringens]
 gi|225006924|dbj|BAH29238.1| recombinase [Clostridium perfringens]
 gi|225006926|dbj|BAH29239.1| recombinase [Clostridium perfringens]
 gi|225006928|dbj|BAH29240.1| recombinase [Clostridium perfringens]
 gi|225006930|dbj|BAH29241.1| recombinase [Clostridium perfringens]
 gi|225006932|dbj|BAH29242.1| recombinase [Clostridium perfringens]
 gi|225006934|dbj|BAH29243.1| recombinase [Clostridium perfringens]
 gi|225006936|dbj|BAH29244.1| recombinase [Clostridium perfringens]
 gi|225006938|dbj|BAH29245.1| recombinase [Clostridium perfringens]
 gi|225006940|dbj|BAH29246.1| recombinase [Clostridium perfringens]
 gi|225006942|dbj|BAH29247.1| recombinase [Clostridium perfringens]
 gi|225006944|dbj|BAH29248.1| recombinase [Clostridium perfringens]
 gi|225006946|dbj|BAH29249.1| recombinase [Clostridium perfringens]
 gi|225006948|dbj|BAH29250.1| recombinase [Clostridium perfringens]
 gi|225006950|dbj|BAH29251.1| recombinase [Clostridium perfringens]
 gi|225006952|dbj|BAH29252.1| recombinase [Clostridium perfringens]
 gi|225006954|dbj|BAH29253.1| recombinase [Clostridium perfringens]
 gi|225006956|dbj|BAH29254.1| recombinase [Clostridium perfringens]
 gi|225006958|dbj|BAH29255.1| recombinase [Clostridium perfringens]
 gi|225006960|dbj|BAH29256.1| recombinase [Clostridium perfringens]
 gi|225006962|dbj|BAH29257.1| recombinase [Clostridium perfringens]
 gi|225006964|dbj|BAH29258.1| recombinase [Clostridium perfringens]
 gi|225006966|dbj|BAH29259.1| recombinase [Clostridium perfringens]
 gi|225006968|dbj|BAH29260.1| recombinase [Clostridium perfringens]
 gi|225006970|dbj|BAH29261.1| recombinase [Clostridium perfringens]
 gi|225006972|dbj|BAH29262.1| recombinase [Clostridium perfringens]
 gi|225006974|dbj|BAH29263.1| recombinase [Clostridium perfringens]
 gi|225006976|dbj|BAH29264.1| recombinase [Clostridium perfringens]
 gi|225006978|dbj|BAH29265.1| recombinase [Clostridium perfringens]
 gi|225006980|dbj|BAH29266.1| recombinase [Clostridium perfringens]
 gi|225006982|dbj|BAH29267.1| recombinase [Clostridium perfringens]
 gi|225006984|dbj|BAH29268.1| recombinase [Clostridium perfringens]
 gi|225006986|dbj|BAH29269.1| recombinase [Clostridium perfringens]
 gi|225006988|dbj|BAH29270.1| recombinase [Clostridium perfringens]
 gi|225006990|dbj|BAH29271.1| recombinase [Clostridium perfringens]
 gi|225006992|dbj|BAH29272.1| recombinase [Clostridium perfringens]
 gi|225006994|dbj|BAH29273.1| recombinase [Clostridium perfringens]
 gi|225006996|dbj|BAH29274.1| recombinase [Clostridium perfringens]
 gi|225006998|dbj|BAH29275.1| recombinase [Clostridium perfringens]
 gi|225007000|dbj|BAH29276.1| recombinase [Clostridium perfringens]
 gi|225007002|dbj|BAH29277.1| recombinase [Clostridium perfringens]
 gi|225007004|dbj|BAH29278.1| recombinase [Clostridium perfringens]
 gi|225007006|dbj|BAH29279.1| recombinase [Clostridium perfringens]
 gi|225007008|dbj|BAH29280.1| recombinase [Clostridium perfringens]
 gi|225007010|dbj|BAH29281.1| recombinase [Clostridium perfringens]
 gi|225007012|dbj|BAH29282.1| recombinase [Clostridium perfringens]
 gi|225007014|dbj|BAH29283.1| recombinase [Clostridium perfringens]
 gi|225007016|dbj|BAH29284.1| recombinase [Clostridium perfringens]
 gi|225007018|dbj|BAH29285.1| recombinase [Clostridium perfringens]
 gi|225007020|dbj|BAH29286.1| recombinase [Clostridium perfringens]
 gi|225007022|dbj|BAH29287.1| recombinase [Clostridium perfringens]
 gi|225007024|dbj|BAH29288.1| recombinase [Clostridium perfringens]
 gi|225007026|dbj|BAH29289.1| recombinase [Clostridium perfringens]
 gi|225007028|dbj|BAH29290.1| recombinase [Clostridium perfringens]
 gi|225007030|dbj|BAH29291.1| recombinase [Clostridium perfringens]
 gi|225007032|dbj|BAH29292.1| recombinase [Clostridium perfringens]
 gi|225007034|dbj|BAH29293.1| recombinase [Clostridium perfringens]
          Length = 96

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/93 (70%), Positives = 83/93 (89%)

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QARLMSQALRKLT +I++S C+++FINQ+R K+G+MFG+PETT GG ALKFY+SVR+D
Sbjct: 4   GLQARLMSQALRKLTGTINKSNCVVIFINQLREKVGIMFGNPETTPGGRALKFYASVRMD 63

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           IRR+ SIK  D ITGN+TRVK+VKNK+A PFKQ
Sbjct: 64  IRRIDSIKQGDGITGNRTRVKIVKNKVAPPFKQ 96


>gi|154424263|gb|ABS82017.1| recombinase A [Lactobacillus casei]
 gi|154424267|gb|ABS82019.1| recombinase A [Lactobacillus casei]
          Length = 105

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/105 (67%), Positives = 88/105 (83%)

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
           T A++DAE+A+D  YA  LGV++  LL+SQPDTGEQ LEI D LV SGA+DI+VIDSVAA
Sbjct: 1   TAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAA 60

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           L PRAEIEGDMG++  G+QARLMSQALRKL+ SI+++K I +FIN
Sbjct: 61  LVPRAEIEGDMGDAHVGLQARLMSQALRKLSGSINKTKTIALFIN 105


>gi|13925871|gb|AAK49450.1| RecA [Bacteroides ovatus]
          Length = 101

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 68/101 (67%), Positives = 85/101 (84%)

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           DAEHA D  YA KLGV++ +L ISQPD GEQALEI + L+RS A+DIIVIDSVAALTP+A
Sbjct: 1   DAEHAFDRFYASKLGVNIDDLFISQPDNGEQALEIAEQLIRSSAIDIIVIDSVAALTPKA 60

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           EIEGDMG++  G+ ARLMSQALRKLT+++S+++   +FINQ
Sbjct: 61  EIEGDMGDNKVGLHARLMSQALRKLTAAVSKTRTTCIFINQ 101


>gi|154424261|gb|ABS82016.1| recombinase A [Lactobacillus casei]
          Length = 105

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 71/105 (67%), Positives = 88/105 (83%)

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
           T A++DAE+A+D  YA  LGV++  LL+SQPDTGEQ LEI D LV SGA+DI+VIDSVAA
Sbjct: 1   TAAYIDAENAMDLKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAA 60

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           L PRAEIEGDMG++  G+QARLMSQALRKL+ SI+++K I +FIN
Sbjct: 61  LVPRAEIEGDMGDAHVGLQARLMSQALRKLSGSINKTKTIALFIN 105


>gi|68635350|emb|CAF21745.1| recombinase A [Lactobacillus amylolyticus]
          Length = 107

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 67/107 (62%), Positives = 91/107 (85%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           +D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+
Sbjct: 1   MDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDILVVDSVAALVPRAEIEGE 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           MG++  G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+
Sbjct: 61  MGDAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGN 107


>gi|2583177|gb|AAB82716.1| RecA [Rhodothermus marinus DSM 4252]
          Length = 119

 Score =  146 bits (369), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 70/109 (64%), Positives = 88/109 (80%), Gaps = 2/109 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K+KALE A+  I++ YGKGAIM+LG   +I   ++V+ +GSL LD ALG+GG P+GRIVE
Sbjct: 8   KAKALELAVKHIEKQYGKGAIMRLGDAPAI--SVDVIPTGSLALDAALGVGGVPRGRIVE 65

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IYGPESSGKTTLALH +A++QK GG CAF+DAEHA D+ YA  LGVDL+
Sbjct: 66  IYGPESSGKTTLALHIMAEAQKLGGACAFIDAEHAFDARYAANLGVDLQ 114


>gi|400968|sp|Q02349|RECA_LEUME RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|149633|gb|AAA25266.1| recombination and repair protein [Leuconostoc mesenteroides]
          Length = 104

 Score =  146 bits (368), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 72/103 (69%), Positives = 85/103 (82%)

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA  LGV    LL+SQPDTGEQ LEI D LV+SGAVDIIV+DSVAAL PRAEIEG+MG+S
Sbjct: 2   YAEALGVQKDELLLSQPDTGEQGLEIADALVQSGAVDIIVVDSVAALVPRAEIEGEMGDS 61

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
             G+QARLMSQALRKL  +++R+  I +FINQ+R KIGVMFG+
Sbjct: 62  HVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGVMFGN 104


>gi|400967|sp|Q02348|RECA_LACHE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|149558|gb|AAA25242.1| recombination and repair protein [Lactobacillus helveticus]
          Length = 104

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/103 (63%), Positives = 89/103 (86%)

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++
Sbjct: 2   YAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDA 61

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
             G+QARLMSQALRKL+ +IS++K I +FINQ+R K+G+MFG+
Sbjct: 62  HVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGIMFGN 104


>gi|68637249|emb|CAF21778.1| recombinase A [Lactobacillus iners]
          Length = 107

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/107 (61%), Positives = 90/107 (84%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           +D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+
Sbjct: 1   MDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDILVVDSVAALVPRAEIEGE 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           MG++  G+QARLMSQALRKL+ +IS++K I +FINQ+R K+G MFG+
Sbjct: 61  MGDAHVGLQARLMSQALRKLSGNISKTKTIAIFINQIREKVGAMFGN 107


>gi|29119697|emb|CAD79374.1| RecA protein [Burkholderia caledonica]
          Length = 115

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 76/114 (66%), Positives = 95/114 (83%), Gaps = 1/114 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 3   EKSKALAAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           EIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LLI
Sbjct: 62  EIYGPESSGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLI 115


>gi|294471052|gb|ADE80787.1| recombinase A [Lactococcus piscium]
          Length = 107

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/107 (62%), Positives = 89/107 (83%)

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            AF+DA HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGA+D++VIDSVAAL
Sbjct: 1   AAFIDAXHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAIDLVVIDSVAAL 60

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            PRAEI+G++G+S  G+QAR+MSQA+RKL+SSI+++K I +FINQ+R
Sbjct: 61  VPRAEIDGEIGDSHVGLQARMMSQAMRKLSSSINKTKTIAIFINQLR 107


>gi|281212286|gb|EFA86446.1| hypothetical protein PPL_00239 [Polysphondylium pallidum PN500]
          Length = 415

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/277 (33%), Positives = 144/277 (51%), Gaps = 30/277 (10%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT--GGTCA 99
           FE ++V+ SG + LD  LGIGG PK  I+E+ G  SSGK+T ALH IAQ Q      TC 
Sbjct: 128 FEKLDVIPSGIISLDYRLGIGGIPKNHIIELCGESSSGKSTFALHLIAQLQAADPTATCL 187

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F+D E++  S +A  LGVD   + ISQP   EQ ++I    ++     ++VIDS+A L P
Sbjct: 188 FIDTENSFSSGWASTLGVDQSRVFISQPKYAEQVIDIVSKSLKQQFFGVVVIDSLAGLIP 247

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           R +++    ES   +Q + + +AL++L+  + +S C LV  NQ+R         P+    
Sbjct: 248 REQLDSTNIES---VQYKWLDEALQQLSHLVRQSNCSLVITNQLRNSFKT--HQPKNNNE 302

Query: 220 GNALKF----YSSVRLDIRRVGSIKDK-DSITGNQTRVKVVKNKMA-------------- 260
                     Y+ ++L++++   + DK + I G++T V++ KN +               
Sbjct: 303 SGNNNNSNDKYTDIKLELKKDRYLFDKQERIDGSKTLVEIKKNSLEIHSKLQSKRLLGRF 362

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           +PF    FDI +  GIS   EL+ L    +I+  S  
Sbjct: 363 TPF----FDIKFDNGISNNDELVKLAELLNIITTSNT 395


>gi|154424265|gb|ABS82018.1| recombinase A [Lactobacillus casei]
          Length = 105

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 70/105 (66%), Positives = 87/105 (82%)

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
           T A++DAE+A+D  YA  LGV++  LL+SQPDTGEQ LEI D LV SGA+DI+VIDSVAA
Sbjct: 1   TAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAA 60

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           L PRAEIEGDMG++   +QARLMSQALRKL+ SI+++K I +FIN
Sbjct: 61  LVPRAEIEGDMGDAHVCLQARLMSQALRKLSGSINKTKTIALFIN 105


>gi|166714593|gb|ABY88028.1| RecA [Stenotrophomonas sp. LMG 10874]
          Length = 97

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 70/97 (72%), Positives = 82/97 (84%), Gaps = 2/97 (2%)

Query: 204 RMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           RMKIGVM    SPETTTGGNALKFY+SVRLDIRR+G+IK  D I GNQT++KVVKNK+A 
Sbjct: 1   RMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIGNQTKIKVVKNKLAP 60

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           PFKQV  +I+YGEGIS  GELID+GV A +V+K+GAW
Sbjct: 61  PFKQVITEILYGEGISREGELIDMGVDAKLVEKAGAW 97


>gi|148990150|ref|ZP_01821390.1| recombinase A [Streptococcus pneumoniae SP6-BS73]
 gi|147924544|gb|EDK75632.1| recombinase A [Streptococcus pneumoniae SP6-BS73]
          Length = 174

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 73/159 (45%), Positives = 107/159 (67%), Gaps = 5/159 (3%)

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQ 265
           MFG+PETT GG ALKFY+SVRLD+R    IK     K++  G +T++KVVKNK+A PFK+
Sbjct: 1   MFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKE 60

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
              +IMYGEGIS  GEL+ +     I+ K+GAW+S+K +++GQG EN+K +L E+ EI +
Sbjct: 61  AVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKIGQGSENAKKYLAEHPEIFD 120

Query: 326 NIESLLRQNAGLV-ADSLLQEPAINTKDDADKDDTDNVE 363
            I+  +R   GL+  + + ++   N KD+  K++  N E
Sbjct: 121 EIDKQVRSKFGLIDGEEVSEQDTENKKDEPKKEEAVNEE 159


>gi|552007|gb|AAA26929.1| sequence derived from a PCR product [Streptococcus mutans]
          Length = 103

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 66/103 (64%), Positives = 87/103 (84%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F+DAEHALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL P
Sbjct: 1   FIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           RAEI+GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ
Sbjct: 61  RAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQ 103


>gi|281414272|ref|ZP_06246014.1| protein RecA [Micrococcus luteus NCTC 2665]
          Length = 103

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 64/105 (60%), Positives = 85/105 (80%), Gaps = 2/105 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+ KALEAAL+QI + +GKG++M+LG Q      +EV+ +GS+ +D+ALGIGG P+GR
Sbjct: 1   MTDREKALEAALAQIDKQFGKGSVMRLGDQTQ--APVEVIPTGSVAMDVALGIGGLPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           +VEIYGPESSGKTTLALH +A +Q+ GG  AF+DAEHALD +YAR
Sbjct: 59  VVEIYGPESSGKTTLALHAVANAQRNGGIAAFIDAEHALDPVYAR 103


>gi|330004304|ref|ZP_08304862.1| RecA protein [Klebsiella sp. MS 92-3]
 gi|328536676|gb|EGF62998.1| RecA protein [Klebsiella sp. MS 92-3]
          Length = 346

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/239 (35%), Positives = 129/239 (53%), Gaps = 31/239 (12%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV---- 117
           GG P GRIVEI+GP S+GKT LA   +  +QK GG   F+D E++ D   A  +G+    
Sbjct: 35  GGLPCGRIVEIFGPPSAGKTFLATRAMIAAQKVGGIAVFLDHENSFDVGLAEVMGLQSDE 94

Query: 118 DLKNLLISQPDTGEQALEIT---------DMLVRSGAVDIIVIDSVAALTPRAEIEG--- 165
           D  N +  QPDT E A+++T         + L+ + A  +IV DS+A++ PR + E    
Sbjct: 95  DEGNWVYKQPDTFEDAIDLTGQILSLVRKESLIPAEAPIVIVYDSLASMVPRQKFEKFEK 154

Query: 166 ------------DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
                       +M ++     AR  S  L  L     +    L+F+NQ+R K+GVMFG 
Sbjct: 155 MADGTAKEKDELNMNDNT--ALARATSANLPTLAKWAQKYNACLIFLNQVRTKMGVMFGD 212

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           P T+ GG++ KFY+SVR+ +   G +K+     G   + + VKNK+A PF++ E++  +
Sbjct: 213 PTTSPGGDSPKFYASVRIKLGG-GQLKEGGDRVGQLVKAECVKNKVAPPFQKCEWNFYF 270


>gi|1710063|sp|P49987|RECA_STRSL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|153789|gb|AAA26965.1| recombination and repair protein [Streptococcus salivarius]
          Length = 104

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/103 (62%), Positives = 87/103 (84%)

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YAR LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAA  PRAEI+GD G+S
Sbjct: 2   YARALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAAFVPRAEIDGDSGDS 61

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
             G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+G+MFG+
Sbjct: 62  HVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGN 104


>gi|552010|gb|AAA26962.1| sequence derived from a PCR product [Streptococcus pyogenes]
          Length = 102

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 65/102 (63%), Positives = 86/102 (84%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F+DAEHALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL P
Sbjct: 1   FIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RAEI+GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FIN
Sbjct: 61  RAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFIN 102


>gi|27650988|emb|CAD36660.1| homologous recombination factor [Streptococcus suis]
          Length = 118

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 65/118 (55%), Positives = 89/118 (75%), Gaps = 4/118 (3%)

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K + +FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+D+R    IK     KD   
Sbjct: 1   NKTKTVAIFINQLREKVGVMFGNPETTTGGRALKFYASVRMDVRGNTQIKGTGDKKDQNV 60

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           G +T+VK+VKNK+A PFK+   +IMYGEGIS  GELI++G    I+ K+GAW+S+ G+
Sbjct: 61  GKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGE 118


>gi|110004765|emb|CAK99099.1| putative reca protein c-terminal truncated [Spiroplasma citri]
          Length = 130

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 66/119 (55%), Positives = 94/119 (78%), Gaps = 2/119 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +D+ + L+  + +I++ YGKGAIM+LG + ++   IE V + SL LD A+G+GG+PKGRI
Sbjct: 14  LDQDEILKTVMKEIEKTYGKGAIMKLGDKSNLT--IEAVLTRSLLLDEAIGVGGYPKGRI 71

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +EI+GPESSGKTTL+LH IA+ QK GG  AF+DAEHALD  YA+K+GV++  L+I+QP+
Sbjct: 72  IEIFGPESSGKTTLSLHAIAEVQKDGGRGAFIDAEHALDPNYAKKIGVNIAELIIAQPE 130


>gi|166714600|gb|ABY88031.1| RecA [Stenotrophomonas sp. LMG 10890]
          Length = 97

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 68/97 (70%), Positives = 81/97 (83%), Gaps = 2/97 (2%)

Query: 204 RMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           R KIGVM    SPE TTGGNALKFY+SVRLDIRR+G+IK  D I GNQT++KVVKNK+A 
Sbjct: 1   RHKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGNQTKIKVVKNKLAP 60

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           PFKQV  +I+YGEGIS  GELID+GV+A +V+K+GAW
Sbjct: 61  PFKQVITEILYGEGISREGELIDMGVEAKLVEKAGAW 97


>gi|15027129|emb|CAC44783.1| RecA protein [Lactobacillus zeae]
          Length = 106

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 65/106 (61%), Positives = 88/106 (83%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           +D  YA +LGV++ +LL+SQP++GEQ LEI +ML+ S AVDI+VIDSVAAL P+AEIEG 
Sbjct: 1   MDPKYAAELGVNIDDLLLSQPNSGEQGLEIAEMLIESAAVDIVVIDSVAALVPKAEIEGA 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           +G+S  G+QARLMSQALRK+  SI+ +  +++FINQ+R K+GVMFG
Sbjct: 61  IGDSHVGLQARLMSQALRKMAGSINNTNTLVIFINQLREKVGVMFG 106


>gi|27651018|emb|CAD36675.1| homologous recombination factor [Streptococcus suis]
 gi|27651038|emb|CAD36685.1| homologous recombination factor [Streptococcus suis]
 gi|27651040|emb|CAD36686.1| homologous recombination factor [Streptococcus suis]
 gi|27651042|emb|CAD36687.1| homologous recombination factor [Streptococcus suis]
 gi|27651044|emb|CAD36688.1| homologous recombination factor [Streptococcus suis]
 gi|27651046|emb|CAD36689.1| homologous recombination factor [Streptococcus suis]
 gi|27651048|emb|CAD36690.1| homologous recombination factor [Streptococcus suis]
          Length = 118

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 65/118 (55%), Positives = 89/118 (75%), Gaps = 4/118 (3%)

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K + +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+D+R    IK     KD   
Sbjct: 1   NKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVRGNTQIKGTGDKKDQNV 60

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           G +T+VK+VKNK+A PFK+V  +IMYGEGIS  GELI++G    I+ K+GAW+S+ G+
Sbjct: 61  GKETKVKIVKNKVAPPFKEVVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGE 118


>gi|208969012|dbj|BAG74307.1| homologous recombination factor [Streptococcus suis]
          Length = 118

 Score =  139 bits (351), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 65/118 (55%), Positives = 89/118 (75%), Gaps = 4/118 (3%)

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K + +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+D+R    IK     KD   
Sbjct: 1   NKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVRGNTQIKGTGDKKDQNV 60

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           G +T+VK+VKNK+A PFK+V  +IMYGEGIS  GELI++G    I+ K+GAW+S+ G+
Sbjct: 61  GKETKVKIVKNKVAPPFKEVVVEIMYGEGISRTGELIEVGSNLGIIQKAGAWYSYNGE 118


>gi|37956359|gb|AAP15356.1| RecA [Geobacter hydrogenophilus]
          Length = 158

 Score =  139 bits (350), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 66/85 (77%), Positives = 77/85 (90%)

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           +M VRSGAVD++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  IS+S C +
Sbjct: 1   EMFVRSGAVDVLVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGIISKSNCCV 60

Query: 198 VFINQMRMKIGVMFGSPETTTGGNA 222
           +FINQ+RMKIGVMFGSPETTTGGNA
Sbjct: 61  IFINQIRMKIGVMFGSPETTTGGNA 85


>gi|551905|gb|AAA25436.1| sequence derived from a PCR product [Mycoplasma pulmonis]
          Length = 102

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 61/102 (59%), Positives = 86/102 (84%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F+D EH++D +YA+ LG+D+ NLLISQPD+GEQALEI D+L +SG++D+IV+DSVAAL P
Sbjct: 1   FIDVEHSIDPVYAKNLGIDIDNLLISQPDSGEQALEIVDILAKSGSIDLIVVDSVAALVP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
            AE+ G+M +   G+QARLMS+ALRK+T S+S++K  ++FIN
Sbjct: 61  EAELNGEMKDQSIGLQARLMSKALRKITGSLSKNKTSVIFIN 102


>gi|15027139|emb|CAC44784.1| RecA protein [Lactobacillus zeae]
          Length = 107

 Score =  139 bits (349), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 64/107 (59%), Positives = 89/107 (83%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           +D  YA +LGV++ +LL+SQP++GEQ LEI +ML+ S AV+I+VIDSVAAL P+AEIEG 
Sbjct: 1   MDPKYAAELGVNIDDLLLSQPNSGEQGLEIAEMLIESAAVEIVVIDSVAALVPKAEIEGA 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           +G+S  G+QARLMSQALRK+  SI+ +  +++FINQ+R K+GVMFG+
Sbjct: 61  IGDSHVGLQARLMSQALRKMAGSINNTNTLVIFINQLREKVGVMFGN 107


>gi|27650972|emb|CAD36652.1| homologous recombination factor [Streptococcus suis]
 gi|27650974|emb|CAD36653.1| homologous recombination factor [Streptococcus suis]
 gi|27650976|emb|CAD36654.1| homologous recombination factor [Streptococcus suis]
 gi|27650978|emb|CAD36655.1| homologous recombination factor [Streptococcus suis]
 gi|27650980|emb|CAD36656.1| homologous recombination factor [Streptococcus suis]
 gi|27650982|emb|CAD36657.1| homologous recombination factor [Streptococcus suis]
 gi|27650984|emb|CAD36658.1| homologous recombination factor [Streptococcus suis]
 gi|27650986|emb|CAD36659.1| homologous recombination factor [Streptococcus suis]
 gi|27650990|emb|CAD36661.1| homologous recombination factor [Streptococcus suis]
 gi|27650992|emb|CAD36662.1| homologous recombination factor [Streptococcus suis]
 gi|27650994|emb|CAD36663.1| homologous recombination factor [Streptococcus suis]
 gi|27650996|emb|CAD36664.1| homologous recombination factor [Streptococcus suis]
 gi|27650998|emb|CAD36665.1| homologous recombination factor [Streptococcus suis]
 gi|27651000|emb|CAD36666.1| homologous recombination factor [Streptococcus suis]
 gi|27651002|emb|CAD36667.1| homologous recombination factor [Streptococcus suis]
 gi|27651004|emb|CAD36668.1| homologous recombination factor [Streptococcus suis]
 gi|27651006|emb|CAD36669.1| homologous recombination factor [Streptococcus suis]
 gi|27651008|emb|CAD36670.1| homologous recombination factor [Streptococcus suis]
 gi|27651010|emb|CAD36671.1| homologous recombination factor [Streptococcus suis]
 gi|27651012|emb|CAD36672.1| homologous recombination factor [Streptococcus suis]
 gi|27651014|emb|CAD36673.1| homologous recombination factor [Streptococcus suis]
 gi|27651016|emb|CAD36674.1| homologous recombination factor [Streptococcus suis]
 gi|27651020|emb|CAD36676.1| homologous recombination factor [Streptococcus suis]
 gi|27651022|emb|CAD36677.1| homologous recombination factor [Streptococcus suis]
 gi|27651024|emb|CAD36678.1| homologous recombination factor [Streptococcus suis]
 gi|27651026|emb|CAD36679.1| homologous recombination factor [Streptococcus suis]
 gi|27651030|emb|CAD36681.1| homologous recombination factor [Streptococcus suis]
 gi|27651032|emb|CAD36682.1| homologous recombination factor [Streptococcus suis]
 gi|27651034|emb|CAD36683.1| homologous recombination factor [Streptococcus suis]
 gi|27651036|emb|CAD36684.1| homologous recombination factor [Streptococcus suis]
 gi|27651050|emb|CAD36691.1| homologous recombination factor [Streptococcus suis]
 gi|76577737|gb|ABA54139.1| homologous recombination factor [Streptococcus suis]
 gi|145750862|gb|ABP96746.1| homologous recombination factor [Streptococcus suis]
 gi|145751055|gb|ABP96755.1| homologous recombination factor [Streptococcus suis]
 gi|145751100|gb|ABP96757.1| homologous recombination factor [Streptococcus suis]
 gi|145751389|gb|ABP96771.1| homologous recombination factor [Streptococcus suis]
 gi|164454904|dbj|BAF96997.1| homologous recombination factor [Streptococcus suis]
 gi|164454906|dbj|BAF96998.1| homologous recombination factor [Streptococcus suis]
 gi|164454908|dbj|BAF96999.1| homologous recombination factor [Streptococcus suis]
 gi|164454912|dbj|BAF97001.1| homologous recombination factor [Streptococcus suis]
 gi|208969014|dbj|BAG74308.1| homologous recombination factor [Streptococcus suis]
          Length = 118

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/118 (54%), Positives = 88/118 (74%), Gaps = 4/118 (3%)

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K + +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+D+R    IK     KD   
Sbjct: 1   NKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVRGNTQIKGTGDKKDQNV 60

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           G +T+VK+VKNK+A PFK+   +IMYGEGIS  GELI++G    I+ K+GAW+S+ G+
Sbjct: 61  GKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGE 118


>gi|145751246|gb|ABP96764.1| homologous recombination factor [Streptococcus suis]
 gi|208969010|dbj|BAG74306.1| homologous recombination factor [Streptococcus suis]
          Length = 118

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/118 (54%), Positives = 88/118 (74%), Gaps = 4/118 (3%)

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K + +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+D+R    IK     KD   
Sbjct: 1   NKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVRGNTQIKGTGDKKDQNV 60

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           G +T+VK+VKNK+A PFK+   +IMYGEGIS  GELI++G    I+ K+GAW+S+ G+
Sbjct: 61  GKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLDIIQKAGAWYSYNGE 118


>gi|1199583|gb|AAC43621.1| RecA-like protein [Spiroplasma citri]
 gi|1586658|prf||2204301A recA gene
          Length = 130

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/119 (54%), Positives = 92/119 (77%), Gaps = 2/119 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +D+ + L+  + +I++ YGKGAIM+LG + +    IE V + SL LD A+G+GG+PKGRI
Sbjct: 14  LDQDEILKTVMKEIEKTYGKGAIMKLGDKSNFT--IEAVLTRSLLLDEAIGVGGYPKGRI 71

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +EI+GPESSGKTTL+LH IA+ QK GG  AF+D EHALD  YA+K+GV++  L+I+QP+
Sbjct: 72  IEIFGPESSGKTTLSLHAIAEVQKDGGRGAFIDVEHALDPNYAKKIGVNIAELIIAQPE 130


>gi|166714588|gb|ABY88026.1| RecA [Stenotrophomonas sp. LMG 1108]
          Length = 97

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/96 (69%), Positives = 80/96 (83%), Gaps = 2/96 (2%)

Query: 205 MKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +KIGVM    SPE TTGGNALKFY+SVRLDIRR+G+IK  D I GNQT++KVVKNK+A P
Sbjct: 2   LKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGNQTKIKVVKNKLAPP 61

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           FKQV  +I+YGEGIS  GELID+GV A +V+K+GAW
Sbjct: 62  FKQVITEILYGEGISREGELIDMGVDAKLVEKAGAW 97


>gi|27651028|emb|CAD36680.1| homologous recombination factor [Streptococcus suis]
          Length = 118

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/117 (54%), Positives = 87/117 (74%), Gaps = 4/117 (3%)

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K + +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+D+R    IK     KD   
Sbjct: 1   NKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVRGNTQIKGTGDKKDQNV 60

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
           G +T+VK+VKNK+A PFK+   +IMYGEGIS  GELI++G    I+ K+GAW+S+ G
Sbjct: 61  GKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNG 117


>gi|164454910|dbj|BAF97000.1| homologous recombination factor [Streptococcus suis]
          Length = 118

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/118 (54%), Positives = 87/118 (73%), Gaps = 4/118 (3%)

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K + +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+D+R    IK     KD   
Sbjct: 1   NKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVRGNTQIKGTGDKKDQNV 60

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           G +T+VK+VKNK+A PFK+   +IMYGEGIS  GELI+ G    I+ K+GAW+S+ G+
Sbjct: 61  GKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIETGSNLGIIQKAGAWYSYNGE 118


>gi|310893918|gb|ADP37896.1| RecA [Streptococcus oralis]
 gi|310893920|gb|ADP37897.1| RecA [Streptococcus infantis]
 gi|310893922|gb|ADP37898.1| RecA [Streptococcus oligofermentans]
          Length = 104

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 66/104 (63%), Positives = 86/104 (82%)

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+G
Sbjct: 1   ALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDG 60

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           D+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GV
Sbjct: 61  DIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGV 104


>gi|310893912|gb|ADP37893.1| RecA [Streptococcus pneumoniae]
 gi|310893914|gb|ADP37894.1| RecA [Streptococcus pseudopneumoniae]
 gi|310893916|gb|ADP37895.1| RecA [Streptococcus mitis]
          Length = 104

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 65/104 (62%), Positives = 86/104 (82%)

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+G
Sbjct: 1   ALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDG 60

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           D+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GV
Sbjct: 61  DIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGV 104


>gi|39939203|ref|NP_950969.1| hypothetical protein PAM_717 [Onion yellows phytoplasma OY-M]
 gi|39722312|dbj|BAD04802.1| hypothetical protein [Onion yellows phytoplasma OY-M]
          Length = 117

 Score =  136 bits (342), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 66/110 (60%), Positives = 84/110 (76%), Gaps = 2/110 (1%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LE  +  I++ +GKG+IMQ  S+    +GIE +S+GSL LDIAL IGG+ KGRI+EIY P
Sbjct: 10  LEDTIKDIEKKFGKGSIMQFNSK--THKGIESISTGSLSLDIALEIGGYAKGRIIEIYSP 67

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           ESSGKTTL LH I+++QK GG  AF+DAEHALD  YA+ +GV+L  LLIS
Sbjct: 68  ESSGKTTLTLHAISEAQKKGGNVAFIDAEHALDPSYAKAIGVNLDKLLIS 117


>gi|27651052|emb|CAD36692.1| homologous recombination factor [Streptococcus suis]
          Length = 118

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 63/115 (54%), Positives = 86/115 (74%), Gaps = 4/115 (3%)

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K + +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+D+R    IK     KD   
Sbjct: 1   NKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVRGNTQIKGTGDKKDQNV 60

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
           G +T+VK+VKNK+A PFK+   +IMYGEGIS  GELI++G    I+ K+GAW+S+
Sbjct: 61  GKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSY 115


>gi|166714617|gb|ABY88036.1| RecA [Stenotrophomonas sp. ICB141]
          Length = 97

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/96 (68%), Positives = 78/96 (81%), Gaps = 2/96 (2%)

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           RKLT +I RS  ++VFINQ+RMKIGVM    SPE TTGGNALKFY+SVRLDIRR+G+I  
Sbjct: 1   RKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAINK 60

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277
            D I GNQT++KVVKNK+A PFKQV  +I+YGE IS
Sbjct: 61  GDEIIGNQTKIKVVKNKLAPPFKQVITEILYGESIS 96


>gi|294471048|gb|ADE80785.1| recombinase A [Lactococcus lactis subsp. hordniae]
          Length = 108

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 63/108 (58%), Positives = 87/108 (80%)

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AF+DA +ALD  YA+ LGV++  LL+SQPD GEQ L+I + L+ SGAVD++VIDSVAAL 
Sbjct: 1   AFIDAXNALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAALV 60

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           P+AEI+G++G+S  G+QAR+MSQA+RKL   I+++K   +FINQ+R K
Sbjct: 61  PKAEIDGEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREK 108


>gi|166714590|gb|ABY88027.1| RecA [Stenotrophomonas sp. LMG 6608]
          Length = 93

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/93 (69%), Positives = 78/93 (83%), Gaps = 2/93 (2%)

Query: 208 GVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           GVM    SPE TTGGNALKFY+SVRLDIRR+G+IK  D I GNQT++KVVKNK+A PFKQ
Sbjct: 1   GVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGNQTKIKVVKNKLAPPFKQ 60

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           V  +I+YGEGIS  GELID+GV+A +V+K+GAW
Sbjct: 61  VITEILYGEGISREGELIDMGVEAKLVEKAGAW 93


>gi|213421034|ref|ZP_03354100.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 91

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 59/91 (64%), Positives = 81/91 (89%)

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           ++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKF
Sbjct: 1   EIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKF 60

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           Y+SVRLDIRR+G++K+ D++ G++TRVKVVK
Sbjct: 61  YASVRLDIRRIGAVKEGDNVVGSETRVKVVK 91


>gi|224086956|ref|XP_002308017.1| predicted protein [Populus trichocarpa]
 gi|222853993|gb|EEE91540.1| predicted protein [Populus trichocarpa]
          Length = 335

 Score =  132 bits (333), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 66/133 (49%), Positives = 93/133 (69%), Gaps = 1/133 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K  AL  AL+Q+   +G+ +++ L    S      ++S+GSL LD+ALGIGG PKGR+VE
Sbjct: 59  KDNALRLALTQLAGEFGRESMLSLQRFFSSRRA-SIISTGSLKLDLALGIGGLPKGRMVE 117

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYG E+SGKTT+ALH I ++QK GG CAF+D E+A+D   A+ +GV+ +NLLIS+PD  E
Sbjct: 118 IYGQEASGKTTIALHIIKEAQKLGGYCAFLDVENAMDHSLAKSMGVNTENLLISRPDCAE 177

Query: 132 QALEITDMLVRSG 144
             L + + L +SG
Sbjct: 178 NLLSVVNTLTKSG 190



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 1/120 (0%)

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           + E T GGNALKFYS+VRL + R G +K  D +TG     +VVKNK+A    + E  I +
Sbjct: 209 AEEVTCGGNALKFYSAVRLRMIRTGLLKTGDKVTGLGVCAQVVKNKLAPAMTKAEIGIQF 268

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           G G  F  E+++L  + S++ K G+ +   G+ +      ++ +L EN  + + I + LR
Sbjct: 269 GRGFCFESEVLELACEQSLIKKEGSSYVI-GREVFSNEHAAEQYLIENEGVLDQIVAKLR 327


>gi|206977914|ref|ZP_03238802.1| recA protein, group I intron-containing [Bacillus cereus H3081.97]
 gi|217961200|ref|YP_002339768.1| recA protein, group I intron-containing [Bacillus cereus AH187]
 gi|229140420|ref|ZP_04268975.1| hypothetical protein bcere0013_35190 [Bacillus cereus BDRD-ST26]
 gi|229197890|ref|ZP_04324606.1| hypothetical protein bcere0001_34260 [Bacillus cereus m1293]
 gi|206743914|gb|EDZ55333.1| recA protein, group I intron-containing [Bacillus cereus H3081.97]
 gi|217067311|gb|ACJ81561.1| recA protein, group I intron-containing [Bacillus cereus AH187]
 gi|228585608|gb|EEK43710.1| hypothetical protein bcere0001_34260 [Bacillus cereus m1293]
 gi|228642981|gb|EEK99257.1| hypothetical protein bcere0013_35190 [Bacillus cereus BDRD-ST26]
 gi|324327673|gb|ADY22933.1| recombinase A [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 141

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/128 (57%), Positives = 96/128 (75%)

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PETT GG ALKFYS+VRL++RR   +K  + I GN+T+VKVVKNK+A PF+  E DIMYG
Sbjct: 2   PETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMYG 61

Query: 274 EGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           EGIS  GE++D+  +  IV KSGAW+S+  +RLGQGRENSK FL+EN ++ E I   +R+
Sbjct: 62  EGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFIRE 121

Query: 334 NAGLVADS 341
           + G+  DS
Sbjct: 122 HHGISEDS 129


>gi|229081032|ref|ZP_04213544.1| hypothetical protein bcere0023_36720 [Bacillus cereus Rock4-2]
 gi|228702262|gb|EEL54736.1| hypothetical protein bcere0023_36720 [Bacillus cereus Rock4-2]
          Length = 141

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/128 (57%), Positives = 96/128 (75%)

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PETT GG ALKFYS+VRL++RR   +K  + I GN+T+VKVVKNK+A PF+  E DIMYG
Sbjct: 2   PETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMYG 61

Query: 274 EGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           EGIS  GE++D+  +  IV KSGAW+S+  +RLGQGRENSK FL+EN ++ E I   +R+
Sbjct: 62  EGISREGEILDMASELDIVQKSGAWYSYNDERLGQGRENSKQFLKENTDLREEIAFFIRE 121

Query: 334 NAGLVADS 341
           + G+  DS
Sbjct: 122 HHGISEDS 129


>gi|206972643|ref|ZP_03233585.1| RecA protein [Bacillus cereus AH1134]
 gi|229071276|ref|ZP_04204500.1| hypothetical protein bcere0025_34500 [Bacillus cereus F65185]
 gi|229180057|ref|ZP_04307401.1| hypothetical protein bcere0005_34030 [Bacillus cereus 172560W]
 gi|206732456|gb|EDZ49636.1| RecA protein [Bacillus cereus AH1134]
 gi|228603266|gb|EEK60743.1| hypothetical protein bcere0005_34030 [Bacillus cereus 172560W]
 gi|228711897|gb|EEL63848.1| hypothetical protein bcere0025_34500 [Bacillus cereus F65185]
          Length = 141

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/128 (57%), Positives = 96/128 (75%)

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PETT GG ALKFYS+VRL++RR   +K  + I GN+T+VKVVKNK+A PF+  E DIMYG
Sbjct: 2   PETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMYG 61

Query: 274 EGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           EGIS  GE++D+  +  IV KSGAW+S+  +RLGQGRENSK FL+EN ++ E I   +R+
Sbjct: 62  EGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFIRE 121

Query: 334 NAGLVADS 341
           + G+  DS
Sbjct: 122 HHGISEDS 129


>gi|52141709|ref|YP_085120.1| recA protein (recombinase A), C-terminal region [Bacillus cereus
           E33L]
 gi|65321105|ref|ZP_00394064.1| COG0468: RecA/RadA recombinase [Bacillus anthracis str. A2012]
 gi|167635863|ref|ZP_02394172.1| RecA domain protein [Bacillus anthracis str. A0442]
 gi|167639875|ref|ZP_02398144.1| recA protein, group I intron-containing [Bacillus anthracis str.
           A0193]
 gi|170687912|ref|ZP_02879126.1| recA protein, group I intron-containing [Bacillus anthracis str.
           A0465]
 gi|170706853|ref|ZP_02897311.1| recA protein, group I intron-containing [Bacillus anthracis str.
           A0389]
 gi|177652124|ref|ZP_02934670.1| recA protein, group I intron-containing [Bacillus anthracis str.
           A0174]
 gi|196034096|ref|ZP_03101506.1| recA protein, group I intron-containing [Bacillus cereus W]
 gi|218904907|ref|YP_002452741.1| recA protein, group I intron-containing [Bacillus cereus AH820]
 gi|227813313|ref|YP_002813322.1| recA protein, group I intron-containing [Bacillus anthracis str.
           CDC 684]
 gi|228916417|ref|ZP_04079984.1| hypothetical protein bthur0012_36320 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228928829|ref|ZP_04091861.1| hypothetical protein bthur0010_35210 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228935076|ref|ZP_04097906.1| hypothetical protein bthur0009_35300 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228947500|ref|ZP_04109790.1| hypothetical protein bthur0007_36280 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228986923|ref|ZP_04147050.1| hypothetical protein bthur0001_35980 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229092817|ref|ZP_04223955.1| hypothetical protein bcere0021_35680 [Bacillus cereus Rock3-42]
 gi|229123293|ref|ZP_04252497.1| hypothetical protein bcere0016_35820 [Bacillus cereus 95/8201]
 gi|229602786|ref|YP_002868021.1| recA protein, group I intron-containing [Bacillus anthracis str.
           A0248]
 gi|254683512|ref|ZP_05147372.1| recombinase A [Bacillus anthracis str. CNEVA-9066]
 gi|254722033|ref|ZP_05183822.1| recombinase A [Bacillus anthracis str. A1055]
 gi|254735819|ref|ZP_05193525.1| recombinase A [Bacillus anthracis str. Western North America
           USA6153]
 gi|254739655|ref|ZP_05197349.1| recombinase A [Bacillus anthracis str. Kruger B]
 gi|254751051|ref|ZP_05203090.1| recombinase A [Bacillus anthracis str. Vollum]
 gi|254759369|ref|ZP_05211394.1| recombinase A [Bacillus anthracis str. Australia 94]
 gi|301055269|ref|YP_003793480.1| RecA protein, C-terminal region [Bacillus anthracis CI]
 gi|51975178|gb|AAU16728.1| recA protein (recombinase A), C-terminal region [Bacillus cereus
           E33L]
 gi|167512276|gb|EDR87653.1| recA protein, group I intron-containing [Bacillus anthracis str.
           A0193]
 gi|167528820|gb|EDR91578.1| RecA domain protein [Bacillus anthracis str. A0442]
 gi|170128271|gb|EDS97140.1| recA protein, group I intron-containing [Bacillus anthracis str.
           A0389]
 gi|170668228|gb|EDT18977.1| recA protein, group I intron-containing [Bacillus anthracis str.
           A0465]
 gi|172082493|gb|EDT67558.1| recA protein, group I intron-containing [Bacillus anthracis str.
           A0174]
 gi|195993170|gb|EDX57128.1| recA protein, group I intron-containing [Bacillus cereus W]
 gi|218534896|gb|ACK87294.1| recA protein, group I intron-containing [Bacillus cereus AH820]
 gi|227006565|gb|ACP16308.1| protein RecA, group I intron-containing [Bacillus anthracis str.
           CDC 684]
 gi|228660069|gb|EEL15705.1| hypothetical protein bcere0016_35820 [Bacillus cereus 95/8201]
 gi|228690615|gb|EEL44396.1| hypothetical protein bcere0021_35680 [Bacillus cereus Rock3-42]
 gi|228772872|gb|EEM21311.1| hypothetical protein bthur0001_35980 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228812020|gb|EEM58351.1| hypothetical protein bthur0007_36280 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228824646|gb|EEM70448.1| hypothetical protein bthur0009_35300 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228830636|gb|EEM76241.1| hypothetical protein bthur0010_35210 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228843220|gb|EEM88301.1| hypothetical protein bthur0012_36320 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229267194|gb|ACQ48831.1| recA protein, group I intron-containing [Bacillus anthracis str.
           A0248]
 gi|300377438|gb|ADK06342.1| RecA protein, C-terminal region [Bacillus cereus biovar anthracis
           str. CI]
          Length = 141

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/128 (57%), Positives = 96/128 (75%)

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PETT GG ALKFYS+VRL++RR   +K  + I GN+T+VKVVKNK+A PF+  E DIMYG
Sbjct: 2   PETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMYG 61

Query: 274 EGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           EGIS  GE++D+  +  IV KSGAW+S+  +RLGQGRENSK FL+EN ++ E I   +R+
Sbjct: 62  EGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFIRE 121

Query: 334 NAGLVADS 341
           + G+  DS
Sbjct: 122 HHGISEDS 129


>gi|49478369|ref|YP_037840.1| recA protein (recombinase A), C-terminal region [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|49329925|gb|AAT60571.1| recA protein (recombinase A), C-terminal region [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 141

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/128 (57%), Positives = 96/128 (75%)

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PETT GG ALKFYS+VRL++RR   +K  + I GN+T+VKVVKNK+A PF+  E DIMYG
Sbjct: 2   PETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMYG 61

Query: 274 EGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           EGIS  GE++D+  +  IV KSGAW+S+  +RLGQGRENSK FL+EN ++ E I   +R+
Sbjct: 62  EGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFIRE 121

Query: 334 NAGLVADS 341
           + G+  DS
Sbjct: 122 HHGISEDS 129


>gi|301124545|ref|XP_002909710.1| protein recA [Phytophthora infestans T30-4]
 gi|262106791|gb|EEY64843.1| protein recA [Phytophthora infestans T30-4]
          Length = 131

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 65/123 (52%), Positives = 83/123 (67%), Gaps = 19/123 (15%)

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           VAAL PRAE+EG+MG+    +QARLMSQAL                      K+G++FGS
Sbjct: 16  VAALVPRAELEGEMGDQQIALQARLMSQALHS-------------------SKVGIIFGS 56

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PE T+GG AL++Y+SVRLDIRR  +IK+ D + GN+T VKV KNK+ASPFK   FD+M+G
Sbjct: 57  PEVTSGGTALRYYASVRLDIRRKTAIKEGDQVVGNETAVKVAKNKLASPFKVATFDMMFG 116

Query: 274 EGI 276
            GI
Sbjct: 117 RGI 119


>gi|86450980|gb|ABC96757.1| RecA [Pasteuria ramosa]
          Length = 93

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 62/93 (66%), Positives = 76/93 (81%)

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
           H IA+ Q+ GG  A +DAEHALD IYAR LGV +  LL+SQPDTGEQ LEI + LVRSGA
Sbjct: 1   HAIAEVQRGGGEAAXIDAEHALDPIYARNLGVKVDTLLVSQPDTGEQGLEIAEALVRSGA 60

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           ++++VIDSVAAL P+AEIEG+MG+S  G+QARL
Sbjct: 61  IEMLVIDSVAALVPKAEIEGEMGDSHVGLQARL 93


>gi|228909603|ref|ZP_04073426.1| hypothetical protein bthur0013_37550 [Bacillus thuringiensis IBL
           200]
 gi|229098248|ref|ZP_04229195.1| hypothetical protein bcere0020_34820 [Bacillus cereus Rock3-29]
 gi|229117265|ref|ZP_04246643.1| hypothetical protein bcere0017_35450 [Bacillus cereus Rock1-3]
 gi|228666165|gb|EEL21629.1| hypothetical protein bcere0017_35450 [Bacillus cereus Rock1-3]
 gi|228685146|gb|EEL39077.1| hypothetical protein bcere0020_34820 [Bacillus cereus Rock3-29]
 gi|228849892|gb|EEM94723.1| hypothetical protein bthur0013_37550 [Bacillus thuringiensis IBL
           200]
          Length = 141

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/140 (53%), Positives = 101/140 (72%)

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PETT GG ALKFYS+VRL++RR   +K  + I GN+T+VKVVKNK+A PF+  E DIMYG
Sbjct: 2   PETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMYG 61

Query: 274 EGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           EGIS  GE++D+  +  IV KSGAW+S+  +RLGQGRENSK FL+EN ++ E I   +R 
Sbjct: 62  EGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFVRD 121

Query: 334 NAGLVADSLLQEPAINTKDD 353
           + G+  DS +++   +T  D
Sbjct: 122 HHGIGEDSGVEDTEDSTLQD 141


>gi|56419830|ref|YP_147148.1| hypothetical protein GK1295 [Geobacillus kaustophilus HTA426]
 gi|297530530|ref|YP_003671805.1| RecA domain protein [Geobacillus sp. C56-T3]
 gi|56379672|dbj|BAD75580.1| hypothetical protein [Geobacillus kaustophilus HTA426]
 gi|297253782|gb|ADI27228.1| RecA domain protein [Geobacillus sp. C56-T3]
          Length = 101

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 64/95 (67%), Positives = 76/95 (80%), Gaps = 2/95 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  ALE AL QI+R +GKGAIM+LG Q  +   + VV SGSL LDIALG+GG+P+GRIV
Sbjct: 4   DRQAALEQALKQIERQFGKGAIMKLGEQ--VDRKVSVVPSGSLALDIALGVGGYPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           EIYGPESSGKTT+ALH IA+ QK GG  AF+DAEH
Sbjct: 62  EIYGPESSGKTTVALHAIAEVQKRGGQAAFIDAEH 96


>gi|289609880|emb|CBI60370.1| unnamed protein product [Sordaria macrospora]
          Length = 89

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/91 (64%), Positives = 78/91 (85%), Gaps = 2/91 (2%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG + ++   +E +S+GSLGLDIALG+GG P+GR++E+YGPESSGKTTLALH IA++Q
Sbjct: 1   MKLGQKEAMQ--VEAISTGSLGLDIALGVGGLPRGRVIEVYGPESSGKTTLALHVIAEAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
           K GGT AFVDAEHALD +YA+KLGV++  L+
Sbjct: 59  KNGGTAAFVDAEHALDPVYAKKLGVNIDELI 89


>gi|229174444|ref|ZP_04301976.1| hypothetical protein bcere0006_35370 [Bacillus cereus MM3]
 gi|228609004|gb|EEK66294.1| hypothetical protein bcere0006_35370 [Bacillus cereus MM3]
          Length = 141

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/132 (56%), Positives = 97/132 (73%)

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PETT GG ALKFYS+VRL++RR   +K  + I GN+T+VKVVKNK+A PF+  E DIMYG
Sbjct: 2   PETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMYG 61

Query: 274 EGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           EGIS  GE++D+  +  IV KSGAW+S+  +RLGQGRENSK FL+EN ++ E I   +R 
Sbjct: 62  EGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFVRD 121

Query: 334 NAGLVADSLLQE 345
           + G+  DS  +E
Sbjct: 122 HHGIGEDSGAEE 133


>gi|158315583|ref|YP_001508091.1| RecA domain-containing protein [Frankia sp. EAN1pec]
 gi|158110988|gb|ABW13185.1| RecA domain protein [Frankia sp. EAN1pec]
          Length = 274

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 57/116 (49%), Positives = 83/116 (71%)

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE 281
           + +F   VR D+RR+ ++KD      N+TRVKVV+NKMA PF+  EFDI+YG GIS  G 
Sbjct: 27  SCRFSQPVRHDVRRIETLKDGQEAVANRTRVKVVRNKMAPPFRMAEFDIVYGGGISREGS 86

Query: 282 LIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           LID+GV+ +I+ KSGAW++  G +LGQG+EN++ FLR+N ++A   E  +++  GL
Sbjct: 87  LIDMGVEHTIIRKSGAWYTDDGDQLGQGKENARSFLRDNPDLANETEKRIKEKLGL 142


>gi|166714610|gb|ABY88035.1| RecA [Stenotrophomonas sp. ICB194]
          Length = 89

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 63/89 (70%), Positives = 76/89 (85%), Gaps = 2/89 (2%)

Query: 196 ILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
           +++FINQ+R+KIGVM    SPETTTGGNALKFY+SVRLDIRR+G+IK  D I GNQT++K
Sbjct: 1   LVIFINQLRIKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIGNQTKIK 60

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           VVKNK+A PFKQV  +I+YGEGIS  GEL
Sbjct: 61  VVKNKLAPPFKQVITEILYGEGISREGEL 89


>gi|229031409|ref|ZP_04187410.1| hypothetical protein bcere0028_34630 [Bacillus cereus AH1271]
 gi|228729904|gb|EEL80883.1| hypothetical protein bcere0028_34630 [Bacillus cereus AH1271]
          Length = 141

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 73/128 (57%), Positives = 95/128 (74%)

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PETT GG ALKFYS+VRL++RR   +K  + I GN+T+VKVVKNK+A PF+  E DIMYG
Sbjct: 2   PETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMYG 61

Query: 274 EGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           EGIS  GE++D+  +  IV KSGAW+S+  +RLGQGRENSK FL+EN ++ E I   +R 
Sbjct: 62  EGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFVRD 121

Query: 334 NAGLVADS 341
           + G+  DS
Sbjct: 122 HHGIGEDS 129


>gi|229162715|ref|ZP_04290672.1| hypothetical protein bcere0009_34850 [Bacillus cereus R309803]
 gi|228620597|gb|EEK77466.1| hypothetical protein bcere0009_34850 [Bacillus cereus R309803]
          Length = 141

 Score =  129 bits (325), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 73/128 (57%), Positives = 95/128 (74%)

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PETT GG ALKFYS+VRL++RR   +K  + I GN+T+VKVVKNK+A PF+  E DIMYG
Sbjct: 2   PETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMYG 61

Query: 274 EGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           EGIS  GE++D+  +  IV KSGAW+S+  +RLGQGRENSK FL+EN ++ E I   +R 
Sbjct: 62  EGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFVRD 121

Query: 334 NAGLVADS 341
           + G+  DS
Sbjct: 122 HHGIGEDS 129


>gi|222097225|ref|YP_002531282.1| reca protein (recombinase a), c-terminal region [Bacillus cereus
           Q1]
 gi|221241283|gb|ACM13993.1| recA protein (recombinase A), C-terminal region [Bacillus cereus
           Q1]
          Length = 131

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/124 (57%), Positives = 94/124 (75%)

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PETT GG ALKFYS+VRL++RR   +K  + I GN+T+VKVVKNK+A PF+  E DIMYG
Sbjct: 2   PETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMYG 61

Query: 274 EGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           EGIS  GE++D+  +  IV KSGAW+S+  +RLGQGRENSK FL+EN ++ E I   +R+
Sbjct: 62  EGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFIRE 121

Query: 334 NAGL 337
           + G+
Sbjct: 122 HHGI 125


>gi|310893924|gb|ADP37899.1| RecA [Streptococcus pneumoniae]
 gi|310893926|gb|ADP37900.1| RecA [Streptococcus pneumoniae]
 gi|310893928|gb|ADP37901.1| RecA [Streptococcus pneumoniae]
 gi|310893930|gb|ADP37902.1| RecA [Streptococcus pneumoniae]
 gi|310893932|gb|ADP37903.1| RecA [Streptococcus pneumoniae]
 gi|310893934|gb|ADP37904.1| RecA [Streptococcus pneumoniae]
 gi|310893936|gb|ADP37905.1| RecA [Streptococcus pneumoniae]
 gi|310893938|gb|ADP37906.1| RecA [Streptococcus pneumoniae]
 gi|310893940|gb|ADP37907.1| RecA [Streptococcus pneumoniae]
 gi|310893942|gb|ADP37908.1| RecA [Streptococcus pneumoniae]
 gi|310893944|gb|ADP37909.1| RecA [Streptococcus pneumoniae]
          Length = 97

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/95 (63%), Positives = 81/95 (85%)

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+
Sbjct: 3   LGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGL 62

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           QAR+MSQA+RKL +SI+++K I +FINQ+R K+GV
Sbjct: 63  QARMMSQAMRKLGASINKTKTIAIFINQLREKVGV 97


>gi|77414041|ref|ZP_00790212.1| recA protein [Streptococcus agalactiae 515]
 gi|77159923|gb|EAO71063.1| recA protein [Streptococcus agalactiae 515]
          Length = 110

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/95 (63%), Positives = 78/95 (82%), Gaps = 2/95 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRIV
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIV 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEH
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEH 110


>gi|400966|sp|Q02347|RECA_LACDE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|149592|gb|AAA25251.1| recombination and repair protein [Lactobacillus delbrueckii subsp.
           bulgaricus]
          Length = 104

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 65/103 (63%), Positives = 87/103 (84%)

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA  LGVD+  L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVA L PRAEIEG+MG+S
Sbjct: 2   YAEALGVDIDQLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAVLVPRAEIEGEMGDS 61

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
             G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+
Sbjct: 62  HVGLQARLMSQALRKLSGTIAKTKTIAIFINQIREKVGVMFGN 104


>gi|239826690|ref|YP_002949314.1| RecA domain protein [Geobacillus sp. WCH70]
 gi|239806983|gb|ACS24048.1| RecA domain protein [Geobacillus sp. WCH70]
          Length = 101

 Score =  126 bits (317), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 62/95 (65%), Positives = 75/95 (78%), Gaps = 2/95 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  ALE AL QI++ +GKG+IM+LG Q      I  +SSGSL LDIALG+GG+P+GRIV
Sbjct: 4   DRQAALEQALKQIEKQFGKGSIMRLGEQTD--RKISTISSGSLALDIALGVGGYPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           EIYGPESSGKTT+ALH IA+ QK GG  AF+DAEH
Sbjct: 62  EIYGPESSGKTTVALHAIAEVQKQGGQAAFIDAEH 96


>gi|166714608|gb|ABY88034.1| RecA [Stenotrophomonas sp. ICB91]
          Length = 87

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 60/84 (71%), Positives = 73/84 (86%), Gaps = 2/84 (2%)

Query: 196 ILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
           +++FINQ+R+KIGVM    SPETTTGGNALKFY+SVRLDIRR+G+IK  D I GNQT++K
Sbjct: 1   LVIFINQLRIKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIGNQTKIK 60

Query: 254 VVKNKMASPFKQVEFDIMYGEGIS 277
           VVKNK+A PFKQV  +I+YGEGIS
Sbjct: 61  VVKNKLAPPFKQVITEILYGEGIS 84


>gi|300813295|ref|ZP_07093651.1| putative protein RecA [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300512594|gb|EFK39738.1| putative protein RecA [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 105

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/99 (59%), Positives = 79/99 (79%), Gaps = 2/99 (2%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           ++K +AL+  L+ I++ YG+G+IM+LG    +   I+ + +G+L LDIALGIGG PKGRI
Sbjct: 5   LEKKEALDKVLATIEKQYGEGSIMKLGQDAKL--NIDSIPTGALALDIALGIGGIPKGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           +EIYGPESSGKTT+ALH +A+SQK GG  AF+DAEHALD
Sbjct: 63  IEIYGPESSGKTTIALHIVAESQKLGGNAAFIDAEHALD 101


>gi|46810410|gb|AAT01607.1| RecA [Geobacter metallireducens]
          Length = 77

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/77 (76%), Positives = 70/77 (90%)

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           +MLVRSGAVD++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  IS+S C +
Sbjct: 1   EMLVRSGAVDVLVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGIISKSNCCV 60

Query: 198 VFINQMRMKIGVMFGSP 214
           +FINQ+RMKIGVMFGSP
Sbjct: 61  IFINQIRMKIGVMFGSP 77


>gi|474417|emb|CAA52977.1| recA [Corynebacterium glutamicum]
          Length = 83

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 62/80 (77%), Positives = 71/80 (88%)

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
           KLGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAALTP+AEIEG+MG+S  G
Sbjct: 1   KLGVDTDALLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALTPKAEIEGEMGDSHVG 60

Query: 174 MQARLMSQALRKLTSSISRS 193
           +QARLMSQALRK+T ++  S
Sbjct: 61  LQARLMSQALRKMTGALYNS 80


>gi|46810414|gb|AAT01616.1| RecA [Desulfuromonas acetoxidans DSM 684]
          Length = 77

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/77 (72%), Positives = 72/77 (93%)

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           ++LVRSGA+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT++IS+S C +
Sbjct: 1   EVLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSHMGLQARLMSQALRKLTATISKSNCCV 60

Query: 198 VFINQMRMKIGVMFGSP 214
           +FINQ+RMKIGVMFG+P
Sbjct: 61  IFINQIRMKIGVMFGNP 77


>gi|166714623|gb|ABY88038.1| RecA [Stenotrophomonas sp. LMG 10857]
          Length = 90

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/90 (67%), Positives = 73/90 (81%), Gaps = 2/90 (2%)

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           RKLT +I RS  ++VFINQ+R KIGVM    SPE TTGGNALKFY+SVRLDIRR+G+IK 
Sbjct: 1   RKLTGNIKRSNTLVVFINQLRHKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKK 60

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
            D I GNQT++KVVKNK+A PFKQV  +I+
Sbjct: 61  GDEIIGNQTKIKVVKNKLAPPFKQVITEIL 90


>gi|46810418|gb|AAT01635.1| RecA [Pelobacter carbinolicus DSM 2380]
          Length = 78

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/78 (71%), Positives = 72/78 (92%)

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           T++LVRSGA+D++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKLT +I++S C 
Sbjct: 1   TEVLVRSGAIDVLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTGTINKSNCC 60

Query: 197 LVFINQMRMKIGVMFGSP 214
           ++FINQ+RMKIGVMFG+P
Sbjct: 61  VIFINQIRMKIGVMFGNP 78


>gi|15027131|emb|CAC44781.1| RecA protein [Lactobacillus rhamnosus]
          Length = 92

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 60/90 (66%), Positives = 75/90 (83%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           +D  YA  LGV++  LL+SQPDTGEQ LEI D LV SGA+DI+V+DSVAAL PRAEIEGD
Sbjct: 1   MDPKYAAALGVNIDELLLSQPDTGEQGLEIADELVASGAIDILVVDSVAALVPRAEIEGD 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCI 196
           MG++  G+QARLMSQALRKL+ +I+++K I
Sbjct: 61  MGDAHVGLQARLMSQALRKLSGAINKTKTI 90


>gi|46810412|gb|AAT01606.1| RecA [Geobacter sulfurreducens]
          Length = 77

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 58/77 (75%), Positives = 70/77 (90%)

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           +MLVRSGAVD++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  IS+S C +
Sbjct: 1   EMLVRSGAVDVLVIDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLTGIISKSNCCV 60

Query: 198 VFINQMRMKIGVMFGSP 214
           +FINQ+RMKIGVMFG+P
Sbjct: 61  IFINQIRMKIGVMFGNP 77


>gi|46810416|gb|AAT01624.1| RecA [Desulfuromonas palmitatis]
          Length = 77

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 56/77 (72%), Positives = 71/77 (92%)

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           ++LVRSGA+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT +IS+S C +
Sbjct: 1   EVLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSHMGLQARLMSQALRKLTGTISKSNCCV 60

Query: 198 VFINQMRMKIGVMFGSP 214
           +FINQ+RMKIGVMFG+P
Sbjct: 61  IFINQIRMKIGVMFGNP 77


>gi|166214638|ref|ZP_02240673.1| RecA protein homolog [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166204180|gb|EDR48660.1| RecA protein homolog [Yersinia pestis biovar Antiqua str.
           B42003004]
          Length = 358

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/270 (32%), Positives = 138/270 (51%), Gaps = 34/270 (12%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++GS   I +    + SG   L+ A+     GGFP GRIVE++GP S+GKT LA   +  
Sbjct: 15  KIGSNDEIQKVSHWIDSGFPPLNKAISGRYDGGFPCGRIVEVFGPPSAGKTFLATAAMVS 74

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGV----DLKNLLISQPDTGEQALEIT--------- 137
           +QK  G   F+D E++ D   A   G+    D    +  QPDT E ++E+          
Sbjct: 75  AQKQDGLAVFLDHENSFDVGLAVANGLNADEDDGQWVYKQPDTFEDSVELIGTILKLVRD 134

Query: 138 DMLVRSGAVDIIVIDSVAALTP--RAEIEGDMGESLPGMQARLM---SQALRKLTSS--- 189
           + L+   A   IV DS+A++ P  +AE    M E     + +L    + AL + TS+   
Sbjct: 135 EELIPETAPICIVADSLASMVPNSKAEKFDKMAEGTAKDKDQLNMNDNTALERATSANFP 194

Query: 190 -----ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS--IKDK 242
                  +    ++F+NQ+R KIGVMFG P T+ GG++ KFY+SVR+   R+G+  +KD 
Sbjct: 195 TLALWARKYNACIIFLNQVRTKIGVMFGDPTTSPGGDSPKFYASVRI---RLGASVMKDG 251

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
               G     + +KNK+A PF +  +   +
Sbjct: 252 KEKIGQDVGAECIKNKVAPPFGKCSWKFYF 281


>gi|226328745|ref|ZP_03804263.1| hypothetical protein PROPEN_02645 [Proteus penneri ATCC 35198]
 gi|225201931|gb|EEG84285.1| hypothetical protein PROPEN_02645 [Proteus penneri ATCC 35198]
          Length = 86

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 56/84 (66%), Positives = 72/84 (85%)

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           +MSQA+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G
Sbjct: 1   MMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIG 60

Query: 238 SIKDKDSITGNQTRVKVVKNKMAS 261
           S+K+ D + G++TRVKVVK +  S
Sbjct: 61  SVKNGDEVVGSETRVKVVKKQNCS 84


>gi|31795224|ref|NP_857683.1| RecA-like recombinase [Yersinia pestis KIM]
 gi|31795441|ref|NP_857894.1| putative RecA-like recombinase [Yersinia pestis KIM]
 gi|270491044|ref|ZP_06208117.1| RecA protein [Yersinia pestis KIM D27]
 gi|2996328|gb|AAC13208.1| RecA homolog [Yersinia pestis KIM 10]
 gi|3883111|gb|AAC82771.1| putative RecA-like recombinase [Yersinia pestis KIM 10]
 gi|270335025|gb|EFA45803.1| RecA protein [Yersinia pestis KIM D27]
          Length = 358

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/270 (32%), Positives = 133/270 (49%), Gaps = 34/270 (12%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++GS   I +    + SG   L+ A+     GGFP GRIVE++GP S+GKT LA   +  
Sbjct: 15  KIGSNDEIQKVSHWIDSGFPPLNKAISGRYDGGFPCGRIVEVFGPPSAGKTFLATAAMVS 74

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGV----DLKNLLISQPDTGEQALEIT--------- 137
           +QK  G   F+D E++ D   A   G+    D    +  QPDT E ++E+          
Sbjct: 75  AQKQDGLAVFLDHENSFDVGLAVANGLNADEDDGQWVYKQPDTFEDSVELIGTILKLVRD 134

Query: 138 DMLVRSGAVDIIVIDSVAALTP--RAEIEGDMGESLPGMQ-----------ARLMSQALR 184
           + L+   A   IV DS+A++ P  +AE    M E     +           AR  S    
Sbjct: 135 EELIPETAPICIVADSLASMVPNSKAEKFDKMAEGTAKDKDQLNMNDNTALARATSANFP 194

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS--IKDK 242
            L     +    ++F+NQ+R KIGVMFG P T+ GG++ KFY+SVR+   R+G+  +KD 
Sbjct: 195 TLALWARKYNACIIFLNQVRTKIGVMFGDPTTSPGGDSPKFYASVRI---RLGASVMKDG 251

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
               G     + +KNK+A PF +  +   +
Sbjct: 252 KEKIGQDVGAECIKNKVAPPFGKCSWKFYF 281


>gi|18466673|ref|NP_569480.1| putative recombinase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|16505989|emb|CAD09875.1| putative recombinase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
          Length = 358

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/270 (32%), Positives = 133/270 (49%), Gaps = 34/270 (12%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++GS   I +    + SG   L+ A+     GGFP GRIVE++GP S+GKT LA   +  
Sbjct: 15  KIGSNDEIQKVSHWIDSGFPPLNKAISGRYDGGFPCGRIVEVFGPPSAGKTFLATAAMVS 74

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGV----DLKNLLISQPDTGEQALEIT--------- 137
           +QK  G   F+D E++ D   A   G+    D    +  QPDT E ++E+          
Sbjct: 75  AQKQDGLAVFLDHENSFDVGLAVANGLNADEDDGQWVYKQPDTFEDSVELIGTILKLVRD 134

Query: 138 DMLVRSGAVDIIVIDSVAALTP--RAEIEGDMGESLPGMQ-----------ARLMSQALR 184
           + L+   A   IV DS+A++ P  +AE    M E     +           AR  S    
Sbjct: 135 EELIPETAPICIVADSLASMVPNSKAEKFDKMAEGTAKDKDQLNMNDNTALARATSANFP 194

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS--IKDK 242
            L     +    ++F+NQ+R KIGVMFG P T+ GG++ KFY+SVR+   R+G+  +KD 
Sbjct: 195 TLALWARKYNACIIFLNQVRTKIGVMFGDPTTSPGGDSPKFYASVRI---RLGASVMKDG 251

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
               G     + +KNK+A PF +  +   +
Sbjct: 252 KEKIGQDVGAECIKNKVAPPFGKCSWKFYF 281


>gi|16082840|ref|NP_395394.1| putative recombinase [Yersinia pestis CO92]
 gi|45478652|ref|NP_995508.1| putative recombinase [Yersinia pestis biovar Microtus str. 91001]
 gi|52788111|ref|YP_093939.1| putative recombinase [Yersinia pestis]
 gi|108793584|ref|YP_636738.1| recombinase [Yersinia pestis Antiqua]
 gi|108793784|ref|YP_636626.1| recombinase [Yersinia pestis Nepal516]
 gi|145597248|ref|YP_001154715.1| recombinase [Yersinia pestis Pestoides F]
 gi|149192741|ref|YP_001293972.1| putative recombinase [Yersinia pestis CA88-4125]
 gi|162417927|ref|YP_001604551.1| RecA protein [Yersinia pestis Angola]
 gi|165940386|ref|ZP_02228897.1| RecA protein homolog [Yersinia pestis biovar Orientalis str. IP275]
 gi|167467623|ref|ZP_02332327.1| hypothetical protein YpesF_06949 [Yersinia pestis FV-1]
 gi|229896996|ref|ZP_04512155.1| putative recombinase [Yersinia pestis Pestoides A]
 gi|229897717|ref|ZP_04512872.1| putative recombinase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229900328|ref|ZP_04515462.1| putative recombinase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229904855|ref|ZP_04519965.1| putative recombinase [Yersinia pestis Nepal516]
 gi|294502038|ref|YP_003565775.1| putative recombinase [Yersinia pestis Z176003]
 gi|5834735|emb|CAB55232.1| putative recombinase [Yersinia pestis CO92]
 gi|45357305|gb|AAS58699.1| putative recombinase [Yersinia pestis biovar Microtus str. 91001]
 gi|52538040|emb|CAG27465.1| putative recombinase [Yersinia pestis]
 gi|108777848|gb|ABG20366.1| recombinase [Yersinia pestis Nepal516]
 gi|108782131|gb|ABG16188.1| recombinase [Yersinia pestis Antiqua]
 gi|145213016|gb|ABP42421.1| recombinase [Yersinia pestis Pestoides F]
 gi|148872399|gb|ABR14888.1| putative recombinase [Yersinia pestis CA88-4125]
 gi|162350899|gb|ABX84848.1| RecA protein homolog [Yersinia pestis Angola]
 gi|165911679|gb|EDR30345.1| RecA protein homolog [Yersinia pestis biovar Orientalis str. IP275]
 gi|229678170|gb|EEO74276.1| putative recombinase [Yersinia pestis Nepal516]
 gi|229686581|gb|EEO78663.1| putative recombinase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229693298|gb|EEO83348.1| putative recombinase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229700032|gb|EEO88072.1| putative recombinase [Yersinia pestis Pestoides A]
 gi|262363932|gb|ACY60651.1| putative recombinase [Yersinia pestis D106004]
 gi|262364088|gb|ACY64424.1| putative recombinase [Yersinia pestis D182038]
 gi|294352509|gb|ADE66565.1| putative recombinase [Yersinia pestis Z176003]
 gi|320017582|gb|ADW01152.1| putative recombinase [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 358

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/270 (32%), Positives = 133/270 (49%), Gaps = 34/270 (12%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++GS   I +    + SG   L+ A+     GGFP GRIVE++GP S+GKT LA   +  
Sbjct: 15  KIGSNDEIQKVSHWIDSGFPPLNKAISGRYDGGFPCGRIVEVFGPPSAGKTFLATAAMVS 74

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGV----DLKNLLISQPDTGEQALEIT--------- 137
           +QK  G   F+D E++ D   A   G+    D    +  QPDT E ++E+          
Sbjct: 75  AQKQDGLAVFLDHENSFDVGLAVANGLNADEDDGQWVYKQPDTFEDSVELIGTILKLVRD 134

Query: 138 DMLVRSGAVDIIVIDSVAALTP--RAEIEGDMGESLPGMQ-----------ARLMSQALR 184
           + L+   A   IV DS+A++ P  +AE    M E     +           AR  S    
Sbjct: 135 EELIPETAPICIVADSLASMVPNSKAEKFDKMAEGTAKDKDQLNMNDNTALARATSANFP 194

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS--IKDK 242
            L     +    ++F+NQ+R KIGVMFG P T+ GG++ KFY+SVR+   R+G+  +KD 
Sbjct: 195 TLALWARKYNACIIFLNQVRTKIGVMFGDPTTSPGGDSPKFYASVRI---RLGASVMKDG 251

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
               G     + +KNK+A PF +  +   +
Sbjct: 252 KEKIGQDVGAECIKNKVAPPFGKCSWKFYF 281


>gi|15705849|gb|AAL05848.1| RecA [Burkholderia cepacia]
          Length = 81

 Score =  122 bits (307), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 60/81 (74%), Positives = 68/81 (83%)

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD 
Sbjct: 1   KTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDA 60

Query: 140 LVRSGAVDIIVIDSVAALTPR 160
           LVRSG++D+IVIDSVAAL P+
Sbjct: 61  LVRSGSIDMIVIDSVAALVPK 81


>gi|33087865|gb|AAP93063.1| recombination protein A [Yersinia mollaretii]
          Length = 76

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 58/76 (76%), Positives = 67/76 (88%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 1   IAAAQRAGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 60

Query: 148 IIVIDSVAALTPRAEI 163
           +I++DSVAALTP+AEI
Sbjct: 61  VIIVDSVAALTPKAEI 76


>gi|15027127|emb|CAC44772.1| RecA protein [Lactobacillus paracasei subsp. tolerans]
          Length = 107

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/106 (59%), Positives = 79/106 (74%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           +D  YA  LGV++  LL+SQPDTGEQ LEI D L  S A+DI+VIDSVAAL PRAEIEGD
Sbjct: 1   MDPKYATALGVNIDELLLSQPDTGEQGLEIADELFASVAIDIVVIDSVAALVPRAEIEGD 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           MG++  G+QARLMS ALRKL+ SI+++K I +F+ +   K G   G
Sbjct: 61  MGDAHVGLQARLMSLALRKLSGSINKTKTIALFLIRFVRKSGSFLG 106


>gi|38602347|emb|CAD58029.1| recombinase A [Gluconacetobacter diazotrophicus]
          Length = 76

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/76 (71%), Positives = 69/76 (90%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGA+D++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT ++SRS  +++F+
Sbjct: 1   VRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGTVSRSNTMMIFL 60

Query: 201 NQMRMKIGVMFGSPET 216
           NQ+R+KIGVMFGSPET
Sbjct: 61  NQIRLKIGVMFGSPET 76


>gi|238909168|ref|YP_002939635.1| recombination protein RecA [Eubacterium eligens ATCC 27750]
 gi|238873405|gb|ACR73114.1| recombination protein RecA [Eubacterium eligens ATCC 27750]
          Length = 336

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/323 (30%), Positives = 159/323 (49%), Gaps = 30/323 (9%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK--TG 95
           + S  +GIE +   S  ++  L  GG P GRI+E+ G   SGKTT AL  I+  QK  T 
Sbjct: 22  KASDLKGIEFIPYTSPMMNY-LTRGGVPVGRIIELVGLPQSGKTTTALDIISNFQKKYTD 80

Query: 96  GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML---VRSGAVDIIVID 152
             C ++DAE+ +D  +   LGVD   +++ QP++ E   E+ DML   +RSG + + V+D
Sbjct: 81  KYCVYLDAENTIDKEWGETLGVDWSKVILIQPES-EYGEELLDMLLDYIRSGKIGLAVLD 139

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           S   + P+A  E  + E   G  + LM     K      + +C  + INQ+R  IG  + 
Sbjct: 140 SAPFIIPKAVQEKGLDEKSYGGNSALMKAFCDKAVPLCKKVECTFLLINQLRENIGNPY- 198

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKD---------SITGNQTRVKVVKNKMASPF 263
            P     G A+    S  L   + GS+ D+          + +GN   VKV KNK+    
Sbjct: 199 KPFKIPCGTAIAHACSQILWFTK-GSLLDEKYKEVSSGYANPSGNLVSVKVEKNKVTKND 257

Query: 264 KQVE-FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF-----KGQRLGQGRENSKIFL 317
           ++++ + + Y  G+    + +DL +   I+ ++GAWF       K Q++ QG    + F 
Sbjct: 258 RRLQTYTLNYSTGVDEIKDTLDLAIMLGIISQAGAWFKAILKDGKEQKM-QGFNGVQEFY 316

Query: 318 RENIEIAENIESLLRQ--NAGLV 338
             ++   E +E L +Q   AG+V
Sbjct: 317 YNDL---EELEYLRKQVYEAGMV 336


>gi|293411941|ref|ZP_06654666.1| RecA protein [Escherichia coli B354]
 gi|291469496|gb|EFF11985.1| RecA protein [Escherichia coli B354]
          Length = 357

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 133/270 (49%), Gaps = 34/270 (12%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++GS   I +    + +G   L+ A+     GGFP GRIVE++GP S+GKT LA   +  
Sbjct: 15  KIGSNDEIQKVTHWIDTGFPPLNKAISGRYDGGFPCGRIVEVFGPPSAGKTFLATAAMIS 74

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGV----DLKNLLISQPDTGEQALEIT--------- 137
           +QK  G   F+D E++ D   A   G+    D    +  QPDT E ++E+          
Sbjct: 75  AQKQDGLAVFLDHENSFDVGLAVANGLNADEDDGQWVYKQPDTFEDSVELIGTILKLVRD 134

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEG--DMGESLPGMQ-----------ARLMSQALR 184
           + L+   A   IV DS+A++ P ++ E    M E     +           AR  S    
Sbjct: 135 EELIPESAPICIVADSLASMVPNSKAEKFEKMAEGTAKDKDQLNMNDNTALARATSANFP 194

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS--IKDK 242
            L     +    ++F+NQ+R KIGVMFG P T+ GG++ KFY+SVR+   R+G+  +KD 
Sbjct: 195 TLALWARKYNACIIFLNQVRTKIGVMFGDPTTSPGGDSPKFYASVRI---RLGASVMKDG 251

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
               G     + +KNK+A P+ +  +   +
Sbjct: 252 KEKIGQDVGAECIKNKVAPPYGKCTWKFYF 281


>gi|166714567|gb|ABY88025.1| RecA [Stenotrophomonas acidaminiphila]
          Length = 79

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 56/79 (70%), Positives = 68/79 (86%)

Query: 220 GNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFF 279
           GNALKFY+SVRLDIRR+G+IK  D I GNQT++KVVKNK+A PFKQV  +I+YGEGIS  
Sbjct: 1   GNALKFYASVRLDIRRIGAIKKGDEIIGNQTKIKVVKNKLAPPFKQVVTEILYGEGISRE 60

Query: 280 GELIDLGVKASIVDKSGAW 298
           GELID+GV A +V+K+GAW
Sbjct: 61  GELIDMGVDAKLVEKAGAW 79


>gi|291526297|emb|CBK91884.1| RecA/RadA recombinase [Eubacterium rectale DSM 17629]
          Length = 336

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 98/323 (30%), Positives = 160/323 (49%), Gaps = 30/323 (9%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK--TG 95
           + S  +GIE +   S  ++  L  GG P GRI+E+ G   SGKTT AL  I+  QK  T 
Sbjct: 22  KASDLKGIEFIPYTSPMMNY-LTRGGVPVGRIIELVGLPQSGKTTTALDIISNFQKKYTD 80

Query: 96  GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML---VRSGAVDIIVID 152
             C ++DAE+ +D  +   LGVD   +++ QP++ E   E+ DML   +RSG V + V+D
Sbjct: 81  KYCVYLDAENTIDKEWGETLGVDWSKVILIQPES-EYGEELLDMLLDYIRSGKVGLAVLD 139

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           S   + P+A  E  + E   G  + LM     K      +++C  + INQ+R  IG  + 
Sbjct: 140 SAPFIIPKAVQEKGLDEKSYGGNSALMKAFCDKAVPLCKKTECTFLMINQLRENIGNPY- 198

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKD---------SITGNQTRVKVVKNKMASPF 263
            P     G A+    S  L   + GS+ D+          + +G+   VKV KNK+    
Sbjct: 199 KPFKIPCGTAIAHACSQILWFTK-GSLLDEKYKEVSSGYANPSGHLVSVKVEKNKVTKND 257

Query: 264 KQVE-FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF-----KGQRLGQGRENSKIFL 317
           ++++ + + Y  G+    + +DL +   I+ ++GAW+       K Q++ QG    + F 
Sbjct: 258 RRLQTYTLNYSTGVDEIKDTLDLAIMLGIISQAGAWYKATLKDGKEQKM-QGFNGVQEFY 316

Query: 318 RENIEIAENIESLLRQ--NAGLV 338
             ++   E +E L +Q   AG+V
Sbjct: 317 YNDL---EELEYLRKQVYEAGMV 336


>gi|166714619|gb|ABY88037.1| RecA [Stenotrophomonas sp. ICB209]
          Length = 81

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 58/81 (71%), Positives = 68/81 (83%), Gaps = 2/81 (2%)

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           RKLT +I RS  ++VFINQ+RMKIGVM    SPETTTGGNALKFY+SVRLDIRR+G+IK 
Sbjct: 1   RKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKK 60

Query: 242 KDSITGNQTRVKVVKNKMASP 262
            D I GNQT++KVVKNK+A P
Sbjct: 61  GDEIIGNQTKIKVVKNKLAPP 81


>gi|253576946|ref|ZP_04854270.1| recA protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843677|gb|EES71701.1| recA protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 111

 Score =  119 bits (298), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 74/90 (82%)

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           + + G++TR+KVVKNK+A PFKQVE D+MYGEGIS    L+DLGV+ ++++KSG+WFS+ 
Sbjct: 1   NEMVGSRTRIKVVKNKVAPPFKQVEVDMMYGEGISKEATLLDLGVELNVIEKSGSWFSYA 60

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLR 332
           G RLGQGREN+K FL+E+ EIA  I+S +R
Sbjct: 61  GDRLGQGRENAKQFLKEHPEIASKIDSEIR 90


>gi|15027189|emb|CAC44782.1| RecA protein [Lactobacillus sp. DF1]
          Length = 94

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/94 (57%), Positives = 77/94 (81%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           +D  YA +LGV++ +LL+SQP++GEQ LEI +ML+ S AVD++VIDSVAAL P+AEIEG 
Sbjct: 1   MDPKYAAELGVNIDDLLLSQPNSGEQGLEIAEMLIESAAVDVVVIDSVAALVPKAEIEGA 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +G+S  G+QARLMSQALRK+  +I+ +  +++FI
Sbjct: 61  IGDSHVGLQARLMSQALRKMAGTINNTNTLVIFI 94


>gi|2459511|gb|AAC45677.1| RecA [Bifidobacterium animalis]
 gi|2459513|gb|AAC45678.1| RecA [Bifidobacterium bifidum]
          Length = 78

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/78 (70%), Positives = 70/78 (89%)

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD  +L++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEGDMG+S  G+Q
Sbjct: 1   GVDTDSLIVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGDMGDSHVGLQ 60

Query: 176 ARLMSQALRKLTSSISRS 193
           ARLMSQALRK+T +++++
Sbjct: 61  ARLMSQALRKMTGALAQA 78


>gi|331088905|ref|ZP_08337814.1| RecA protein [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330406503|gb|EGG86011.1| RecA protein [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 334

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 152/306 (49%), Gaps = 18/306 (5%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG- 96
           + S  + IE +   S  ++  L  GG P GR++E+ G   SGKTT AL  IA  QK    
Sbjct: 22  KASDLKSIEFIPYTSPCMNY-LTRGGVPVGRMLELVGLPQSGKTTTALDVIANYQKKYDR 80

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDT--GEQALEITDMLVRSGAVDIIVIDSV 154
              ++DAE+ LD  +   LGV+  ++++ QP++  GEQ L++    VRSG V ++V+DSV
Sbjct: 81  YVVYLDAENTLDKEWGSTLGVNWDSVILIQPESEYGEQLLDMLLDYVRSGKVGLMVLDSV 140

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
             + P++  +  + E   G  + L+     K+     + +C  + +NQ+R  IG  +  P
Sbjct: 141 PFIQPKSTCDKALDEKTYGGNSALIKAFCDKVVPLCKKHECTFLALNQLRENIGNPY-KP 199

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKD--------SITGNQTRVKVVKNKMASPFKQV 266
                G AL    S  L   +   + DK         + +GN   VK+ KNK+    +++
Sbjct: 200 YKIPCGTALAHACSQILWFTKGSLLDDKGNEVSGNYATPSGNLVSVKMEKNKVTKNDRRL 259

Query: 267 -EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK----GQRLGQGRENSKIFLRENI 321
             + + Y  G+    +++D+G+   ++ +SGAWF  K     ++  QG+   + F   ++
Sbjct: 260 GTYTLNYYSGVDEIKDILDMGILLGVIVQSGAWFRAKLKDGTEKKMQGKGGVQDFYYNDL 319

Query: 322 EIAENI 327
           E  E +
Sbjct: 320 EELEYL 325


>gi|2459509|gb|AAC45676.1| RecA [Bifidobacterium adolescentis]
 gi|2459515|gb|AAC45679.1| RecA [Bifidobacterium breve]
 gi|2459521|gb|AAC45682.1| RecA [Bifidobacterium sp.]
 gi|2459525|gb|AAC45684.1| RecA [Bifidobacterium sp.]
          Length = 78

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 54/78 (69%), Positives = 70/78 (89%)

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD  +L++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+Q
Sbjct: 1   GVDTDSLIVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQ 60

Query: 176 ARLMSQALRKLTSSISRS 193
           ARLMSQALRK+T +++++
Sbjct: 61  ARLMSQALRKMTGALAQA 78


>gi|2459517|gb|AAC45680.1| RecA [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|2459519|gb|AAC45681.1| RecA [Bifidobacterium longum]
 gi|2459527|gb|AAC45685.1| RecA [Bifidobacterium sp.]
          Length = 79

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 54/78 (69%), Positives = 70/78 (89%)

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD  +L++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+Q
Sbjct: 1   GVDTDSLIVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQ 60

Query: 176 ARLMSQALRKLTSSISRS 193
           ARLMSQALRK+T +++++
Sbjct: 61  ARLMSQALRKMTGALAQA 78


>gi|304360733|ref|YP_003856864.1| putative RecA protein [Clostridium phage phiCTP1]
 gi|302495592|gb|ADL40372.1| putative RecA protein [Clostridium phage phiCTP1]
          Length = 394

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 156/342 (45%), Gaps = 65/342 (19%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L+  +  I + YG   I    ++G+    ++ +   S  L+  L  GG P G+ VE +G 
Sbjct: 4   LDVLMGTINKKYGSTII----TKGTNMIYVDRIPFSSPHLNYLL-YGGLPVGKAVEFFGG 58

Query: 76  ESSGKTTLALHTIAQSQKTGG--------------------------------------- 96
           E SGKTT AL  +  +Q                                           
Sbjct: 59  EGSGKTTTALDAVKNAQHKATNEYNDTINDLTEQIAKLKESNSKQASKDITKLEKRLVEV 118

Query: 97  ------TCAFVDAEHALDSIYARKLGVDLKNLLISQP--DTGEQALEITDMLVRSGAVDI 148
                 +  +VDAE  LD  +A KLGVDL +L + +P  +T EQ L+I    V +G + +
Sbjct: 119 QEQGIRSVLYVDAEQTLDEDWATKLGVDLNSLYLVRPQTETAEQILQIILDCVATGDICM 178

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
            V+DSV  L P+  +E  + +   G  A  +++   +  + ++++KC L+ INQMR  + 
Sbjct: 179 AVLDSVPMLIPQQLMEETLEKKAYGGIALPLARFSGEAPALLTKNKCTLIMINQMRDDLA 238

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI----------TGNQTRVKVVKNK 258
             +   + T GG A+K   +VRL  R+ G   DKD+            GN   V+VVK K
Sbjct: 239 NPYNKYK-TPGGRAVKHLYAVRLFFRK-GKFFDKDTAELANNKADEPCGNFVNVEVVKTK 296

Query: 259 MASPFKQV-EFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           +  P ++   + + Y  GI    ++++L +  +I+++ G+WF
Sbjct: 297 ICKPDRRTGMYTLNYETGIDVAADILELALNYNIINQRGSWF 338


>gi|165872425|ref|ZP_02217060.1| recA protein, group I intron-containing [Bacillus anthracis str.
           A0488]
 gi|190568449|ref|ZP_03021356.1| recA protein, group I intron-containing [Bacillus anthracis
           Tsiankovskii-I]
 gi|196038412|ref|ZP_03105721.1| protein RecA, group I intron-containing [Bacillus cereus
           NVH0597-99]
 gi|196044586|ref|ZP_03111821.1| recA protein, group I intron-containing [Bacillus cereus 03BB108]
 gi|164711863|gb|EDR17405.1| recA protein, group I intron-containing [Bacillus anthracis str.
           A0488]
 gi|190560453|gb|EDV14431.1| recA protein, group I intron-containing [Bacillus anthracis
           Tsiankovskii-I]
 gi|196024621|gb|EDX63293.1| recA protein, group I intron-containing [Bacillus cereus 03BB108]
 gi|196030820|gb|EDX69418.1| protein RecA, group I intron-containing [Bacillus cereus
           NVH0597-99]
          Length = 131

 Score =  115 bits (288), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 65/119 (54%), Positives = 89/119 (74%)

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           +KFYS+VRL++RR   +K  + I GN+T+VKVVKNK+A PF+  E DIMYGEGIS  GE+
Sbjct: 1   MKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMYGEGISREGEI 60

Query: 283 IDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           +D+  +  IV KSGAW+S+  +RLGQGRENSK FL+EN ++ E I   +R++ G+  DS
Sbjct: 61  LDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFIREHHGISEDS 119


>gi|2459523|gb|AAC45683.1| RecA [Bifidobacterium sp.]
          Length = 77

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/77 (70%), Positives = 69/77 (89%)

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD  +L++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+Q
Sbjct: 1   GVDTDSLIVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQ 60

Query: 176 ARLMSQALRKLTSSISR 192
           ARLMSQALRK+T ++++
Sbjct: 61  ARLMSQALRKMTGALAQ 77


>gi|158079360|ref|YP_001504173.1| putative recombinase A [Enterococcus phage phiEF24C]
 gi|157890204|dbj|BAF81332.1| putative recombinase A [Enterococcus phage phiEF24C]
          Length = 415

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 129/249 (51%), Gaps = 27/249 (10%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LD  LG GG P GR+VE++G  SSGK+TLA+H    +Q       ++D E   D     +
Sbjct: 45  LDYILG-GGLPFGRMVEVFGKNSSGKSTLAVHLTKVAQMLDVPTVWIDVEGTADPERLAE 103

Query: 115 LGVDLK--NLLISQP--------DT------GEQALEITDMLVRSGAVDIIVIDSVAALT 158
           LGVD     + + +P        DT       E+   +  +  + G   +I+ DSVA   
Sbjct: 104 LGVDFSAGGVFMVEPKQNKDGSKDTITVERVAEELQRLLPVFSKLGKPVLIIWDSVAQTA 163

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
              E+E  +G   PG++A+ M+Q  + +   ++ SK + + INQ R ++G MFG  + + 
Sbjct: 164 SEKELEKGVGNQQPGIKAKAMAQFAQIIAPLMTNSKALFIAINQARDELGSMFGGVD-SP 222

Query: 219 GGNALKFYSSVRLDIRRVGSIKDK---------DSITGNQTRVKVVKNKMASPFKQVEFD 269
           GG+AL  ++S+RL++ +   IK+K         ++  G+  RVK  K+K++ P ++ E  
Sbjct: 223 GGHALHHWASLRLEVVKASQIKNKELNAFGAEEETYVGHILRVKTAKSKVSRPNQKAEMY 282

Query: 270 IMYGEGISF 278
           +M   G++ 
Sbjct: 283 LMSDTGLNL 291


>gi|24636780|dbj|BAB63856.2| P0660F12.22 [Oryza sativa Japonica Group]
 gi|57899370|dbj|BAD88017.1| putative RecA protein [Oryza sativa Japonica Group]
          Length = 239

 Score =  112 bits (281), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 44/233 (18%)

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VE++G E+SGKTTLALH + ++QK GG CA++DAE+A +   A  +GV+++ LLI+QPD
Sbjct: 1   MVELFGKEASGKTTLALHVVKEAQKKGGCCAYIDAENAFNPSVAEAIGVNVEKLLIAQPD 60

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           + E +L I + LV  G    +V+                                R + +
Sbjct: 61  SAENSLSIVNTLV--GGSIDVVVVDSVCF-------------------------FRNVRT 93

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            +S ++   +F               E   GGNAL FY++VR+   R     ++   TG 
Sbjct: 94  KLSSNQTPGIF--------------KEVACGGNALGFYAAVRMRTSRRELRYNEAQATGI 139

Query: 249 QTRVKVVKNKMA-SPFKQVEFDIMYGEGISFFGELIDLGVKASIV--DKSGAW 298
              V+++KNK+A +  K+   DI +G+GI +  E+++L     ++  D SG W
Sbjct: 140 GISVQIIKNKLAPATLKEAGIDIRFGKGICYESEILELASSLGVIMKDDSGYW 192


>gi|166714597|gb|ABY88030.1| RecA [Stenotrophomonas sp. LMG 10887]
          Length = 75

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/75 (69%), Positives = 64/75 (85%)

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+SVRLDIRR+G+IK  D I GNQT++KVVKNK+A PFKQV  +I+YGEGIS  GELI
Sbjct: 1   KFYASVRLDIRRIGAIKKGDEIIGNQTKIKVVKNKLAPPFKQVITEILYGEGISREGELI 60

Query: 284 DLGVKASIVDKSGAW 298
           D+GV A +V+K+GAW
Sbjct: 61  DMGVDAKLVEKAGAW 75


>gi|327198329|ref|YP_004306903.1| RecA [Streptococcus phage Dp-1]
 gi|314912631|gb|ADT64022.1| RecA [Streptococcus phage Dp-1]
          Length = 386

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 160/335 (47%), Gaps = 58/335 (17%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           L Q+ + + K +   +  QG   E +  +   +  ++     GG P+ R+VE +GPESSG
Sbjct: 3   LEQLMKDWNKDSKALVAVQGLEREALPRIPFSAPSMNYQ-TYGGLPRKRVVEFFGPESSG 61

Query: 80  KTTLALHTIAQSQ------------------------KTGGTCA---------------- 99
           KTT AL  +  +Q                        K   T                  
Sbjct: 62  KTTSALDIVKNAQMVFEQEWEQKTEELKEKLENARASKASKTAVKELEMQLDSLQEPLKI 121

Query: 100 -FVDAEHALDSIYARKLGVDLKNLLISQPD--TGEQALEITDMLVRSGAVDIIVIDSVAA 156
            ++D E+ LD+ +A+K+GVD+ N+ I +P+  + E+ L+    +  +G V ++V+DS+  
Sbjct: 122 VYLDLENTLDTEWAKKIGVDVDNIWIVRPEMNSAEEILQYVLDIFETGEVGLVVLDSLPY 181

Query: 157 LTPRAEIEGDMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
           +  +  I+ ++ + +  G+ A L ++  RK+T  ++R   I + INQ+R  +   + +  
Sbjct: 182 MVSQNLIDEELTKKAYAGISAPL-TEFSRKVTPLLTRYNAIFLGINQIREDMNSQYNA-Y 239

Query: 216 TTTGGNALKFYSSVRLDIRRVGSIKDKD--SIT-------GNQTRVKVVKNKMASPFKQ- 265
           +T GG   K   +VRL  R+ G   D++  S+T       GN     V K K   P ++ 
Sbjct: 240 STPGGKMWKHACAVRLKFRK-GDYLDENGASLTRTARNPAGNVVESFVEKTKAFKPDRKL 298

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           V + + Y +GI    +L+D+ V+  ++ K+GAWFS
Sbjct: 299 VSYTLSYHDGIQIENDLVDVAVEFGVIQKAGAWFS 333


>gi|309799370|ref|ZP_07693613.1| protein RecA [Streptococcus infantis SK1302]
 gi|308117037|gb|EFO54470.1| protein RecA [Streptococcus infantis SK1302]
          Length = 113

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 53/91 (58%), Positives = 69/91 (75%), Gaps = 2/91 (2%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG GG+PKGRI
Sbjct: 18  ADREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRI 75

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           +EIYGPESSGKTT+ALH +AQ+QK    C  
Sbjct: 76  IEIYGPESSGKTTVALHAVAQAQKRRRNCCL 106


>gi|255683589|gb|ACU27400.1| recombination repair protein [Bacillus phage Bcp1]
          Length = 407

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 129/254 (50%), Gaps = 24/254 (9%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GR++E+ G  S GK+T   H +  +   G  C  +D E   D+     LG+D   
Sbjct: 56  GGLPFGRMIEVAGVPSGGKSTFTHHVMRVATALGCICVLIDVEGTSDNERLTALGIDTSK 115

Query: 122 LLISQPDTGE----------QALEITDMLV--RSGAVDII-VIDSVAALTPRAEIEGDMG 168
           +L+ QPD  +          Q +E T  L   +   V ++ V DSV +   + E+E D G
Sbjct: 116 VLVKQPDPDKGTALTVEEVGQTVEETLKLFGEKYPHVPVVYVWDSVGSTPSQVELEKDFG 175

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT----GGNALK 224
           E   G +A+ ++Q + K+T  +S+SK + + INQ+R  IG   G+P   T    GG A +
Sbjct: 176 EQNVGARAKAITQFVTKVTPMVSQSKSLFIGINQVRDDIG---GNPMFKTYKVPGGKAWE 232

Query: 225 FYSSVRLDIRRVGSIKDKDSIT----GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
             +++R++I+  G+I     +     G+   VK  K+K++ PF++    ++   GI +  
Sbjct: 233 HAATLRIEIKNRGAINKGSGVNKERLGHTMGVKTQKSKVSRPFQEATGSLLADTGIDYEY 292

Query: 281 ELIDLGVKASIVDK 294
            L+ +G +A I+ K
Sbjct: 293 NLVTMGDEAGIIGK 306


>gi|29243786|gb|AAO30098.1| RecA-like protein [Anaplasma phagocytophilum]
 gi|37499737|gb|AAQ91886.1| truncated RecA [Anaplasma phagocytophilum]
 gi|258627905|gb|ACV85578.1| truncated RecA-like protein [Anaplasma phagocytophilum]
 gi|258627924|gb|ACV85591.1| truncated RecA-like protein [Anaplasma phagocytophilum]
          Length = 87

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 49/80 (61%), Positives = 66/80 (82%), Gaps = 2/80 (2%)

Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
          DK +A++AA+ QI+R +G+G+IM+L  Q S  E +E VS+GS+ LD ALG+GG P+GRI+
Sbjct: 10 DKQRAVDAAIGQIERAFGRGSIMRL--QNSPVEAVECVSTGSIALDAALGVGGLPRGRII 67

Query: 71 EIYGPESSGKTTLALHTIAQ 90
          EI+GPESSGKTTLALH IA+
Sbjct: 68 EIFGPESSGKTTLALHVIAE 87


>gi|105959014|gb|ABF81593.1| truncated RecA [Anaplasma phagocytophilum]
          Length = 87

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 49/80 (61%), Positives = 66/80 (82%), Gaps = 2/80 (2%)

Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
          DK +A++AA+ QI+R +G+G+IM+L  Q S  E +E VS+GS+ LD ALG+GG P+GRI+
Sbjct: 10 DKQRAVDAAIGQIERAFGRGSIMRL--QNSPVEAVECVSTGSVALDAALGVGGLPRGRII 67

Query: 71 EIYGPESSGKTTLALHTIAQ 90
          EI+GPESSGKTTLALH IA+
Sbjct: 68 EIFGPESSGKTTLALHVIAE 87


>gi|88606969|ref|YP_505754.1| recA protein, truncation [Anaplasma phagocytophilum HZ]
 gi|88598032|gb|ABD43502.1| recA protein, truncated [Anaplasma phagocytophilum HZ]
          Length = 84

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 49/80 (61%), Positives = 66/80 (82%), Gaps = 2/80 (2%)

Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
          DK +A++AA+ QI+R +G+G+IM+L  Q S  E +E VS+GS+ LD ALG+GG P+GRI+
Sbjct: 7  DKQRAVDAAIGQIERAFGRGSIMRL--QNSPVEAVECVSTGSIALDAALGVGGLPRGRII 64

Query: 71 EIYGPESSGKTTLALHTIAQ 90
          EI+GPESSGKTTLALH IA+
Sbjct: 65 EIFGPESSGKTTLALHVIAE 84


>gi|157325096|ref|YP_001468521.1| gp141 [Listeria phage A511]
 gi|66732784|gb|AAY53375.1| gp72 [Listeria phage P100]
 gi|66733104|gb|AAY52922.1| gp141 [Listeria phage A511]
          Length = 414

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 121/250 (48%), Gaps = 28/250 (11%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LD  LG GG P GR+ EI G  +SGK+TLA+H    + +      ++D E   D     +
Sbjct: 45  LDYILG-GGIPFGRLTEIMGKNASGKSTLAVHLTKVALQLDCKVIWIDTEGTADPSRLSQ 103

Query: 115 LGVDLKNLLISQPD-----------------TGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           LGVD+  +   QP                    E+   I +    S    +I+ DS+   
Sbjct: 104 LGVDVNKIFFVQPKKSKNAEVNKEDSITVEFVAERVEAILNAFSSSEQRIVIIWDSIGHT 163

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
               EIE  +    PG++A+ M+Q    +   +++S C  + INQ R ++G MFG+ + +
Sbjct: 164 PSIKEIEQGVAGKQPGIKAKAMAQFATIIAPMVTKSHCAFIGINQARDEMGSMFGAVD-S 222

Query: 218 TGGNALKFYSSVRLDIRRVGSIKDK---------DSITGNQTRVKVVKNKMASPFKQVEF 268
            GGNAL  ++S+RL++++   I++          +   G++ RV   K+K+++P +  E 
Sbjct: 223 PGGNALHHWASLRLEVKQASKIEEPMQNAFGTMDNVYVGHKLRVITKKSKVSTPRQSAEM 282

Query: 269 DIMYGEGISF 278
            ++   G+ +
Sbjct: 283 FLLSASGLQY 292


>gi|186966718|gb|ACC96220.1| recombinase A [Borrelia sp. QLZSP1]
          Length = 74

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/73 (65%), Positives = 59/73 (80%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GS+ LD ALGIGG+P+GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +
Sbjct: 1   GSIVLDEALGIGGYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPV 60

Query: 111 YARKLGVDLKNLL 123
           YA+ LGV++  L 
Sbjct: 61  YAKALGVNVAELW 73


>gi|186966715|gb|ACC96219.1| recombinase A [Borrelia sp. QSYSP3]
          Length = 74

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/72 (66%), Positives = 59/72 (81%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GS+ LD ALGIGG+P+GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +
Sbjct: 1   GSILLDEALGIGGYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPV 60

Query: 111 YARKLGVDLKNL 122
           YA+ LGV++  L
Sbjct: 61  YAKALGVNVAEL 72


>gi|105959022|gb|ABF81598.1| RecA-like protein [Anaplasma phagocytophilum]
          Length = 85

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/78 (61%), Positives = 64/78 (82%), Gaps = 2/78 (2%)

Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
          DK +A++AA+ QI+R +G+G+IM+L  Q S  E +E VS+GS+ LD ALG+GG P+GRI+
Sbjct: 10 DKQRAVDAAIGQIERAFGRGSIMRL--QNSPVEAVECVSTGSIALDAALGVGGLPRGRII 67

Query: 71 EIYGPESSGKTTLALHTI 88
          EI+GPESSGKTTLALH I
Sbjct: 68 EIFGPESSGKTTLALHVI 85


>gi|186966712|gb|ACC96218.1| recombinase A [Borrelia sp. QTMP2]
          Length = 74

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/72 (66%), Positives = 59/72 (81%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GS+ LD ALGIGG+P+GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +
Sbjct: 2   GSILLDEALGIGGYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPV 61

Query: 111 YARKLGVDLKNL 122
           YA+ LGV++  L
Sbjct: 62  YAKALGVNVAEL 73


>gi|105959019|gb|ABF81596.1| RecA-like protein [Anaplasma phagocytophilum]
          Length = 85

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/78 (61%), Positives = 64/78 (82%), Gaps = 2/78 (2%)

Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
          DK +A++AA+ QI+R +G+G+IM+L  Q S  E +E VS+GS+ LD ALG+GG P+GRI+
Sbjct: 10 DKQRAVDAAIGQIERAFGRGSIMRL--QNSPVEAVECVSTGSIALDAALGVGGLPRGRII 67

Query: 71 EIYGPESSGKTTLALHTI 88
          EI+GPESSGKTTLALH I
Sbjct: 68 EIFGPESSGKTTLALHVI 85


>gi|39939202|ref|NP_950968.1| hypothetical protein PAM_716 [Onion yellows phytoplasma OY-M]
 gi|39722311|dbj|BAD04801.1| hypothetical protein [Onion yellows phytoplasma OY-M]
          Length = 88

 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/87 (52%), Positives = 68/87 (78%)

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +V+DSVAAL P AE+ GDMG    G+QAR+M Q++RK +  I+++  ++++INQ+R K G
Sbjct: 1   MVVDSVAALVPEAELVGDMGNMAMGLQARMMGQSMRKQSGIINKTDTVVIYINQLREKTG 60

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRR 235
           ++F +PE T GG ALKF++S+RLDIRR
Sbjct: 61  MVFCNPEVTQGGKALKFFASLRLDIRR 87


>gi|403968|gb|AAB01016.1| Homology to Swiss-Prot Accession Number P17479, RecA protein
           [Mycoplasma genitalium]
          Length = 93

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 52/87 (59%), Positives = 64/87 (73%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSL LD ALG GG P GRIVE+YG ESSGKTT+AL+ +A  QK G T  ++DAE
Sbjct: 7   IETISTGSLNLDEALGSGGLPLGRIVELYGNESSGKTTIALNAVASFQKAGKTACYIDAE 66

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGE 131
            ALD  YA+ +G+DL  LLI+ P  GE
Sbjct: 67  GALDLAYAKSIGIDLNKLLIAHPRHGE 93


>gi|203454756|ref|YP_002225072.1| gp193 [Mycobacterium phage Myrna]
 gi|197311804|gb|ACH62162.1| gp193 [Mycobacterium phage Myrna]
          Length = 371

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 167/337 (49%), Gaps = 37/337 (10%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           L  I + YG+G +M+  S+  +   I    SGS  LD A+GIGG P+ R +EI G E  G
Sbjct: 8   LDSINKKYGEGTMMR-ASEVPVHPAIH---SGSYALDYAIGIGGLPQDRTIEIGGGEGCG 63

Query: 80  KTTLALHTIAQ----SQKTGGTCAFVDAEHALDSIYARKL----GVDLKNLLISQPDTGE 131
           KTTLAL  + Q        G +   +D EH L   + R+L     +D   +L +QPD  E
Sbjct: 64  KTTLALLAMVQFLTDPANEGRSALILDMEHKLTMSWVRELIGDELMDSDRVLYAQPDHIE 123

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QA  I   LV +G V  ++ DS+      A ++ +  ++  G  A+ + + L       S
Sbjct: 124 QATNIFVDLVSTGEVCYVLYDSIGGSAGMAVVQKEAEKAQVGGDAKAIGRLLNLANIYCS 183

Query: 192 RSKCILVFINQMR--MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--DSITG 247
           + +C+ VFINQ R  M     + +P    GG   K+   +R+ ++     +DK    I G
Sbjct: 184 KYRCLGVFINQERDDMDGYRRYMTP----GGRKAKYMFILRIRLKASTKAEDKIIRKING 239

Query: 248 NQTRV------KVVKNKMASPFKQVEFDIM------YGEGISFFGELIDLGVKASIVDKS 295
            + ++       ++KN++A+PF+  ++++       +G GI    E++ LG    ++  S
Sbjct: 240 EERQIGTLINATIMKNQLAAPFRSAKWNMYNVWTEEFGFGIDTTEEVVRLGTATGVIQGS 299

Query: 296 GAWFS---FKGQRLGQGRENSKIFLRENIEIAENIES 329
           G W++   F G +L QG +  +  ++E+ ++ + + S
Sbjct: 300 G-WYTHPAFPGGKL-QGMKGIQAAVKEDPKLRDTLVS 334


>gi|160347295|gb|ABX26205.1| RecA [Alcaligenaceae bacterium KB-2007]
          Length = 71

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/71 (69%), Positives = 59/71 (83%)

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
           +SVRLDIRR+GSIK  + + G++TRVKVVKNK+A PFKQ EF IMYG GIS  GE+IDLG
Sbjct: 1   ASVRLDIRRIGSIKKGEEVVGSETRVKVVKNKVAPPFKQAEFHIMYGTGISRKGEIIDLG 60

Query: 287 VKASIVDKSGA 297
           V  ++VDKSGA
Sbjct: 61  VPHNVVDKSGA 71


>gi|105959010|gb|ABF81590.1| truncated RecA [Anaplasma phagocytophilum]
          Length = 87

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/80 (58%), Positives = 64/80 (80%), Gaps = 2/80 (2%)

Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
          DK +A++AA+ QI+R +G+G+IM+L  Q S  E +E VS+G + LD ALG+GG P+GRI+
Sbjct: 10 DKQRAVDAAIGQIERAFGRGSIMRL--QNSPVEAVECVSTGPIALDAALGVGGLPRGRII 67

Query: 71 EIYGPESSGKTTLALHTIAQ 90
          EI+GPESSG TTLALH IA+
Sbjct: 68 EIFGPESSGGTTLALHVIAE 87


>gi|213420680|ref|ZP_03353746.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 105

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/78 (53%), Positives = 64/78 (82%)

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+ N+  
Sbjct: 1   KNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATT 60

Query: 316 FLRENIEIAENIESLLRQ 333
           +L+EN   A+ IE  +R+
Sbjct: 61  WLKENPATAKEIEKRVRE 78


>gi|262067816|ref|ZP_06027428.1| RecA protein [Fusobacterium periodonticum ATCC 33693]
 gi|291378540|gb|EFE86058.1| RecA protein [Fusobacterium periodonticum ATCC 33693]
          Length = 466

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 132/264 (50%), Gaps = 16/264 (6%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF--VDAEHAL 107
           +G LG+D  L   GF KG    IYG ES GK+TLAL      Q T     F  VD+E  L
Sbjct: 47  TGILGID--LNTNGFKKGTFNVIYGAESGGKSTLALQICEGFQLTDPDKQFLYVDSEGTL 104

Query: 108 DSIYARKL-GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           D  +  ++  +  +N++  +    E   +    +V+ G VD+I+IDSV ++T  +++   
Sbjct: 105 DETFINRIPNLKKENMIFLKDGIMESIFDTIKEIVKEGLVDVIIIDSVDSMTTNSQLGKS 164

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           + +++   ++R++S+AL  LT  IS+    +  I Q R+ +          +GG A+ +Y
Sbjct: 165 LEDNIVMDKSRILSRALSDLTDFISKYGITIFIIQQERINMSGYTVRQHGRSGGKAMLYY 224

Query: 227 SSVRLDIRRVGSIK--DKDSITGNQT---RVKVV--KNKMASPFKQ----VEFDIMYGEG 275
            S    + ++ S    +KD I+ N+     VK++  K+K++ PFK+    +  D      
Sbjct: 225 PSTVYRLAKINSQNETEKDQISENKVVTQYVKIINEKSKISEPFKETFTWINLDRRKKIA 284

Query: 276 ISFFGELIDLGVKASIVDKSGAWF 299
           +    EL+D      ++ K G+W+
Sbjct: 285 VKKIQELVDYATIYGLITKGGSWY 308


>gi|154600|gb|AAA27363.1| recA protein [Synechococcus sp.]
          Length = 98

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/98 (50%), Positives = 68/98 (69%)

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +R KIG+ +G+PE TTGG ALKFY+SVRLDIRR+ ++K        + +VKV KNK+A P
Sbjct: 1   IRQKIGISYGNPEVTTGGTALKFYASVRLDIRRIQTLKKGAKGICIRAKVKVAKNKVAPP 60

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           F+  EFDI++G+GIS  G ++D   K     + GAW+S
Sbjct: 61  FRIAEFDIIFGKGISRVGCMLDSRNKQCHYARKGAWYS 98


>gi|415252|gb|AAA26966.1| DNA repair protein [Streptococcus gordonii]
          Length = 71

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/71 (67%), Positives = 59/71 (83%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F+DAEHALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++VIDSVAAL P
Sbjct: 1   FIDAEHALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVP 60

Query: 160 RAEIEGDMGES 170
           RAEI+GD+G+S
Sbjct: 61  RAEIDGDIGDS 71


>gi|66821233|ref|XP_644118.1| hypothetical protein DDB_G0274901 [Dictyostelium discoideum AX4]
 gi|60472390|gb|EAL70343.1| hypothetical protein DDB_G0274901 [Dictyostelium discoideum AX4]
          Length = 458

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 97/184 (52%), Gaps = 21/184 (11%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT---- 97
           FE I  ++SG   LD  L IGG P   I+EIYG  S+GK+TL++  ++   K   +    
Sbjct: 79  FEKIPTITSGITSLDYQLQIGGLPLNHIIEIYGDSSTGKSTLSMFILSNLIKNNKSKQEQ 138

Query: 98  ----------------CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
                             ++D+E++ +S +A K+G++L N  + QP+  E+A E+    +
Sbjct: 139 RLSSSSSSLSSSQEENVLYIDSENSFNSEWASKIGMNLSNCTVFQPNNSEEAFELIKKSL 198

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGES-LPGMQARLMSQALRKLTSSISRSKCILVFI 200
           ++    +I++DS+++L    +IE ++ E+    +    ++  L ++++ +  S C  +F 
Sbjct: 199 KNQIFKVIILDSLSSLMSIKDIESNLVENHYQNIGFDWITSNLNEISNLLIDSNCCFIFT 258

Query: 201 NQMR 204
           NQMR
Sbjct: 259 NQMR 262


>gi|74476819|gb|ABA08460.1| RecA [Borrelia spielmanii]
 gi|74476821|gb|ABA08461.1| RecA [Borrelia spielmanii]
          Length = 63

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 44/63 (69%), Positives = 54/63 (85%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D ALGIGG+P+GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA++L
Sbjct: 1   DEALGIGGYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKRL 60

Query: 116 GVD 118
           GV+
Sbjct: 61  GVN 63


>gi|74476817|gb|ABA08459.1| RecA [Borrelia spielmanii]
          Length = 62

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/62 (70%), Positives = 53/62 (85%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D ALGIGG+P+GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA++L
Sbjct: 1   DEALGIGGYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKRL 60

Query: 116 GV 117
           GV
Sbjct: 61  GV 62


>gi|325651039|emb|CBY89341.1| RecA protein [Bradyrhizobium sp. R-46151=t187]
          Length = 110

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/56 (78%), Positives = 53/56 (94%)

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           QPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQ
Sbjct: 1   QPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQ 56


>gi|219558742|ref|ZP_03537818.1| recombinase A [Mycobacterium tuberculosis T17]
          Length = 454

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 65/86 (75%)

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VV +  + PFKQ EFDI+YG+GIS  G LID+GV   ++ KSGAWF+++G++LGQG+EN+
Sbjct: 351 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENA 410

Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339
           + FL EN ++A+ IE  +++  G+ A
Sbjct: 411 RNFLVENADVADEIEKKIKEKLGIGA 436


>gi|289570913|ref|ZP_06451140.1| recombination protein recA [Mycobacterium tuberculosis T17]
 gi|289544667|gb|EFD48315.1| recombination protein recA [Mycobacterium tuberculosis T17]
          Length = 447

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 65/86 (75%)

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VV +  + PFKQ EFDI+YG+GIS  G LID+GV   ++ KSGAWF+++G++LGQG+EN+
Sbjct: 344 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENA 403

Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339
           + FL EN ++A+ IE  +++  G+ A
Sbjct: 404 RNFLVENADVADEIEKKIKEKLGIGA 429


>gi|327197785|ref|YP_004301483.1| gp150 [Brochothrix phage A9]
 gi|299810385|gb|ADJ53184.1| gp150 [Brochothrix phage A9]
          Length = 392

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 114/239 (47%), Gaps = 19/239 (7%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GGFP GR  E+   +  GK+  A+     + +      ++D E         ++G+ +  
Sbjct: 54  GGFPFGRFSELSAKDGVGKSMTAIQATKIAVQMNAVVVWIDVEGTASKEQLSRMGIPVDR 113

Query: 122 LLISQPD-----------TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           +++ QPD            GE   ++ +M+       +I+ DS+        ++ D G  
Sbjct: 114 VIVRQPDPKSSEPLTVESVGESIADMLEMIAGQDIPLLIIWDSIGQTPGAKTMDKDFGNE 173

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG-VMFGSPETTTGGNALKFYSSV 229
            PG+ A+ ++  ++KL   I+    + + INQ+R  +G  MFG   +T GG  LK Y+SV
Sbjct: 174 QPGIHAKAVTNVVQKLAPFITTQNVLFMGINQVRDNMGATMFGPKTSTPGGRGLKHYASV 233

Query: 230 RLDIRRVG----SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           R ++  VG    SIK +     ++ R K+ K+K++ P  Q E  +  G+G   F E+++
Sbjct: 234 RFELSAVGQLKRSIKGEQVYYAHKVRYKLAKSKVSIPNSQGEAVLFAGDG---FNEIVN 289


>gi|167860527|gb|ACA05041.1| recombinase A [Flammeovirga yaeyamensis]
          Length = 86

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 62/80 (77%), Gaps = 2/80 (2%)

Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +K KALE  ++++++ +GKGA+M++       E I  +S+GSLGLD+ALG+GG P+GRI
Sbjct: 9  TEKLKALETTIAKLEKQFGKGAVMKMTDDS--VENIPAISTGSLGLDLALGVGGIPRGRI 66

Query: 70 VEIYGPESSGKTTLALHTIA 89
          +EIYGPESSGKTTL LH IA
Sbjct: 67 IEIYGPESSGKTTLTLHIIA 86


>gi|229086331|ref|ZP_04218508.1| hypothetical protein bcere0022_29180 [Bacillus cereus Rock3-44]
 gi|228696943|gb|EEL49751.1| hypothetical protein bcere0022_29180 [Bacillus cereus Rock3-44]
          Length = 121

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/109 (53%), Positives = 79/109 (72%)

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           +RR   +K  + I GN+T+VKVVKNK+A PF+  E DIMYGEGIS  GE++D+  +  IV
Sbjct: 1   MRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIV 60

Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
            KSGAW+S+  +RLGQGREN+K FL+EN +I E I   +R++ G+  DS
Sbjct: 61  QKSGAWYSYNEERLGQGRENAKQFLKENQDIREEIAFFIREHHGIGEDS 109


>gi|87248011|gb|ABD36058.1| RecA [Borrelia lusitaniae]
          Length = 60

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 42/60 (70%), Positives = 51/60 (85%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALGIGG+P+GRI+E++GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+ LGV
Sbjct: 1   ALGIGGYPRGRIIEVFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGV 60


>gi|308237923|emb|CBK52108.1| RecA protein [Acidithiobacillus ferrivorans]
 gi|308237925|emb|CBK52109.1| RecA protein [Acidithiobacillus ferrivorans]
 gi|308237927|emb|CBK52110.1| RecA protein [Acidithiobacillus ferrivorans]
 gi|308237929|emb|CBK52111.1| RecA protein [Acidithiobacillus ferrivorans]
 gi|308237931|emb|CBK52112.1| RecA protein [Acidithiobacillus ferrivorans]
          Length = 53

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/53 (88%), Positives = 49/53 (92%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           LD  YA KLGVDL+NLLISQPDTGEQALEI DMLVRSGAVD+IVIDSVAALTP
Sbjct: 1   LDPSYAHKLGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVIDSVAALTP 53


>gi|6840959|gb|AAF28847.1|AF119245_1 RecA protein [Salmonella enterica subsp. enterica serovar
          Enteritidis]
          Length = 84

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/81 (60%), Positives = 61/81 (75%), Gaps = 2/81 (2%)

Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
          +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6  NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71 EIYGPESSGKTTLALHTIAQS 91
          EIYGPESSGKT L +  IA +
Sbjct: 64 EIYGPESSGKTALTVQVIAAA 84


>gi|87248013|gb|ABD36059.1| RecA [Borrelia lusitaniae]
          Length = 59

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/59 (69%), Positives = 50/59 (84%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
           ALGIGG+P+GRI+E++GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+ LG
Sbjct: 1   ALGIGGYPRGRIIEVFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALG 59


>gi|48696479|ref|YP_024521.1| putative DNA repair protein [Staphylococcus phage K]
 gi|66394970|ref|YP_240962.1| ORF021 [Staphylococcus phage G1]
 gi|37729175|gb|AAO47542.1| ORF93 [Staphylococcus phage K]
 gi|62636992|gb|AAX92103.1| ORF021 [Staphylococcus phage G1]
 gi|119658091|gb|ABL87131.1| putative recombinase [Staphylococcus phage 812]
 gi|119658094|gb|ABL87133.1| putative recombinase [Staphylococcus phage 812]
 gi|119658098|gb|ABL87136.1| putative recombinase [Staphylococcus phage 812]
 gi|182627955|gb|ACB89117.1| gp ORF124 [Staphylococcus phage A5W]
          Length = 418

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 116/240 (48%), Gaps = 26/240 (10%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D  LG GG P GR+ E+YG   SGK+T A+H    + + G    ++D E   D+    +L
Sbjct: 49  DYILG-GGIPLGRLTEVYGLTGSGKSTFAVHLSRIATQLGVITIWIDIEGTADNNRMEQL 107

Query: 116 GVDLKNLLISQPDTG----------EQALEITDMLVRS------GAVDIIVIDSVAALTP 159
           GVD+  L   Q   G          EQ  +  +  + +      G   + + DS+ A   
Sbjct: 108 GVDVSKLFSIQSGEGRLKNTVELSVEQVGKELEYWIDTFNEKIPGVPIVFIWDSLGATRT 167

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR--MKIGVMFGSPETT 217
           + EI+G + E   G++A    + +  +T  ++ +   L+ INQ R  M  G M+G P  +
Sbjct: 168 QKEIDGGIDEKQMGLKASATQKVINAVTPKLNDTNTGLIVINQARDDMNAG-MYGDPIKS 226

Query: 218 TGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ------TRVKVVKNKMASPFKQVEFDIM 271
           TGG A +  +S+R+ + +   +K K  +TG         R++  K+K++ P ++ E D++
Sbjct: 227 TGGRAFEHSASLRIKVHKASQLKQKSELTGKDEYHGHIMRIETKKSKLSRPGQKAEADLL 286


>gi|308237915|emb|CBK52104.1| RecA protein [Acidithiobacillus ferrooxidans]
 gi|308237917|emb|CBK52105.1| RecA protein [Acidithiobacillus ferrooxidans]
 gi|308237919|emb|CBK52106.1| RecA protein [Acidithiobacillus ferrooxidans]
 gi|308237921|emb|CBK52107.1| RecA protein [Acidithiobacillus ferrooxidans]
          Length = 53

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/53 (88%), Positives = 49/53 (92%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           LD  YA KLGVDL+NLLISQPDTGEQALEI DMLVRSGAVD+IVIDSVAALTP
Sbjct: 1   LDPGYAHKLGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVIDSVAALTP 53


>gi|313711498|emb|CBJ05150.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711608|emb|CBJ05205.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711666|emb|CBJ05234.1| recombinase A [Propionibacterium freudenreichii]
          Length = 104

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 60/86 (69%)

Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
           A PFKQ EFDI+YG+GIS  G LID+GV A IV K+GAWF++   +LGQG+EN++ FL  
Sbjct: 1   APPFKQAEFDILYGKGISREGSLIDMGVDAGIVRKAGAWFTYGDDQLGQGKENARTFLIT 60

Query: 320 NIEIAENIESLLRQNAGLVADSLLQE 345
           + E+A +IE  +R   GL A   + E
Sbjct: 61  HPEVASDIEHKIRVKLGLDASDEVPE 86


>gi|313711490|emb|CBJ05146.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711494|emb|CBJ05148.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711500|emb|CBJ05151.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711502|emb|CBJ05152.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711504|emb|CBJ05153.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711508|emb|CBJ05155.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711510|emb|CBJ05156.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711516|emb|CBJ05159.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711518|emb|CBJ05160.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711526|emb|CBJ05164.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711528|emb|CBJ05165.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711530|emb|CBJ05166.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711532|emb|CBJ05167.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711536|emb|CBJ05169.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711538|emb|CBJ05170.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711540|emb|CBJ05171.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711542|emb|CBJ05172.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711544|emb|CBJ05173.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711548|emb|CBJ05175.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711550|emb|CBJ05176.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711556|emb|CBJ05179.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711558|emb|CBJ05180.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711560|emb|CBJ05181.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711562|emb|CBJ05182.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711564|emb|CBJ05183.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711566|emb|CBJ05184.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711570|emb|CBJ05186.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711572|emb|CBJ05187.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711582|emb|CBJ05192.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711584|emb|CBJ05193.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711586|emb|CBJ05194.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711596|emb|CBJ05199.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711598|emb|CBJ05200.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711600|emb|CBJ05201.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711604|emb|CBJ05203.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711614|emb|CBJ05208.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711618|emb|CBJ05210.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711620|emb|CBJ05211.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711630|emb|CBJ05216.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711632|emb|CBJ05217.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711634|emb|CBJ05218.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711638|emb|CBJ05220.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711644|emb|CBJ05223.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711650|emb|CBJ05226.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711652|emb|CBJ05227.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711654|emb|CBJ05228.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711656|emb|CBJ05229.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711660|emb|CBJ05231.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711664|emb|CBJ05233.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711670|emb|CBJ05236.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711672|emb|CBJ05237.1| recombinase A [Propionibacterium freudenreichii]
 gi|313713072|emb|CBJ05244.1| recombinase A [Propionibacterium freudenreichii]
 gi|313713686|emb|CBJ05245.1| recombinase A [Propionibacterium freudenreichii]
 gi|313713688|emb|CBJ05246.1| recombinase A [Propionibacterium freudenreichii]
 gi|313713690|emb|CBJ05247.1| recombinase A [Propionibacterium freudenreichii]
 gi|313713692|emb|CBJ05248.1| recombinase A [Propionibacterium freudenreichii]
 gi|313713694|emb|CBJ05249.1| recombinase A [Propionibacterium freudenreichii]
 gi|313713696|emb|CBJ05250.1| recombinase A [Propionibacterium freudenreichii]
 gi|313713698|emb|CBJ05251.1| recombinase A [Propionibacterium freudenreichii]
 gi|313713704|emb|CBJ05254.1| recombinase A [Propionibacterium freudenreichii]
 gi|313713706|emb|CBJ05255.1| recombinase A [Propionibacterium freudenreichii]
 gi|313713708|emb|CBJ05256.1| recombinase A [Propionibacterium freudenreichii]
 gi|313713712|emb|CBJ05258.1| recombinase A [Propionibacterium freudenreichii]
          Length = 104

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 60/86 (69%)

Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
           A PFKQ EFDI+YG+GIS  G LID+GV A IV K+GAWF++   +LGQG+EN++ FL  
Sbjct: 1   APPFKQAEFDILYGKGISREGSLIDMGVDAGIVRKAGAWFTYGDDQLGQGKENARTFLIT 60

Query: 320 NIEIAENIESLLRQNAGLVADSLLQE 345
           + E+A +IE  +R   GL A   + E
Sbjct: 61  HPEVASDIEHKIRVKLGLDASDEVPE 86


>gi|313711668|emb|CBJ05235.1| recombinase A [Propionibacterium freudenreichii]
          Length = 104

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 60/86 (69%)

Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
           A PFKQ EFDI+YG+GIS  G LID+GV A IV K+GAWF++   +LGQG+EN++ FL  
Sbjct: 1   APPFKQAEFDILYGKGISREGSLIDMGVDAGIVRKAGAWFTYGDDQLGQGKENARTFLIT 60

Query: 320 NIEIAENIESLLRQNAGLVADSLLQE 345
           + E+A +IE  +R   GL A   + E
Sbjct: 61  HPEVASDIEHKIRVKLGLDASDEVPE 86


>gi|313711492|emb|CBJ05147.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711496|emb|CBJ05149.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711506|emb|CBJ05154.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711512|emb|CBJ05157.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711514|emb|CBJ05158.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711520|emb|CBJ05161.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711522|emb|CBJ05162.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711524|emb|CBJ05163.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711534|emb|CBJ05168.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711546|emb|CBJ05174.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711552|emb|CBJ05177.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711554|emb|CBJ05178.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711568|emb|CBJ05185.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711574|emb|CBJ05188.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711576|emb|CBJ05189.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711578|emb|CBJ05190.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711580|emb|CBJ05191.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711588|emb|CBJ05195.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711590|emb|CBJ05196.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711592|emb|CBJ05197.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711594|emb|CBJ05198.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711602|emb|CBJ05202.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711606|emb|CBJ05204.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711610|emb|CBJ05206.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711612|emb|CBJ05207.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711616|emb|CBJ05209.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711622|emb|CBJ05212.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711624|emb|CBJ05213.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711626|emb|CBJ05214.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711628|emb|CBJ05215.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711636|emb|CBJ05219.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711640|emb|CBJ05221.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711642|emb|CBJ05222.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711646|emb|CBJ05224.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711648|emb|CBJ05225.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711658|emb|CBJ05230.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711662|emb|CBJ05232.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711674|emb|CBJ05238.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711676|emb|CBJ05239.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711678|emb|CBJ05240.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711680|emb|CBJ05241.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711682|emb|CBJ05242.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711684|emb|CBJ05243.1| recombinase A [Propionibacterium freudenreichii]
 gi|313713700|emb|CBJ05252.1| recombinase A [Propionibacterium freudenreichii]
 gi|313713702|emb|CBJ05253.1| recombinase A [Propionibacterium freudenreichii]
 gi|313713710|emb|CBJ05257.1| recombinase A [Propionibacterium freudenreichii]
          Length = 104

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 60/86 (69%)

Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
           A PFKQ EFDI+YG+GIS  G LID+GV A IV K+GAWF++   +LGQG+EN++ FL  
Sbjct: 1   APPFKQAEFDILYGKGISREGSLIDMGVDAGIVRKAGAWFTYGDDQLGQGKENARTFLIT 60

Query: 320 NIEIAENIESLLRQNAGLVADSLLQE 345
           + E+A +IE  +R   GL A   + E
Sbjct: 61  HPEVASDIEHEIRVKLGLDASDEVPE 86


>gi|307636599|gb|ADN78992.1| RecA protein [Vibrio cholerae]
          Length = 58

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/58 (74%), Positives = 50/58 (86%)

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           + G TCAF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV
Sbjct: 1   REGKTCAFIDAEHALDPIYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIV 58


>gi|307636579|gb|ADN78982.1| RecA protein [Vibrio cholerae]
 gi|307636581|gb|ADN78983.1| RecA protein [Vibrio cholerae]
 gi|307636583|gb|ADN78984.1| RecA protein [Vibrio cholerae]
 gi|307636585|gb|ADN78985.1| RecA protein [Vibrio cholerae]
 gi|307636587|gb|ADN78986.1| RecA protein [Vibrio cholerae]
 gi|307636589|gb|ADN78987.1| RecA protein [Vibrio cholerae]
 gi|307636591|gb|ADN78988.1| RecA protein [Vibrio cholerae]
 gi|307636593|gb|ADN78989.1| RecA protein [Vibrio cholerae]
 gi|307636595|gb|ADN78990.1| RecA protein [Vibrio cholerae]
 gi|307636597|gb|ADN78991.1| RecA protein [Vibrio cholerae]
 gi|307636601|gb|ADN78993.1| RecA protein [Vibrio cholerae]
 gi|307636603|gb|ADN78994.1| RecA protein [Vibrio cholerae]
 gi|307636605|gb|ADN78995.1| RecA protein [Vibrio cholerae]
 gi|307636607|gb|ADN78996.1| RecA protein [Vibrio cholerae]
 gi|307636609|gb|ADN78997.1| RecA protein [Vibrio cholerae]
 gi|307636611|gb|ADN78998.1| RecA protein [Vibrio cholerae]
 gi|307636613|gb|ADN78999.1| RecA protein [Vibrio cholerae]
 gi|307636615|gb|ADN79000.1| RecA protein [Vibrio cholerae]
 gi|307636617|gb|ADN79001.1| RecA protein [Vibrio cholerae]
 gi|307636619|gb|ADN79002.1| RecA protein [Vibrio cholerae]
 gi|307636621|gb|ADN79003.1| RecA protein [Vibrio cholerae]
 gi|307636623|gb|ADN79004.1| RecA protein [Vibrio cholerae]
 gi|307636625|gb|ADN79005.1| RecA protein [Vibrio cholerae]
 gi|307636627|gb|ADN79006.1| RecA protein [Vibrio cholerae]
 gi|307636629|gb|ADN79007.1| RecA protein [Vibrio cholerae]
 gi|307636631|gb|ADN79008.1| RecA protein [Vibrio cholerae]
 gi|307636633|gb|ADN79009.1| RecA protein [Vibrio cholerae]
 gi|307636635|gb|ADN79010.1| RecA protein [Vibrio cholerae]
 gi|307636637|gb|ADN79011.1| RecA protein [Vibrio cholerae]
 gi|307636639|gb|ADN79012.1| RecA protein [Vibrio cholerae]
 gi|307636641|gb|ADN79013.1| RecA protein [Vibrio cholerae]
 gi|307636643|gb|ADN79014.1| RecA protein [Vibrio cholerae]
 gi|307636645|gb|ADN79015.1| RecA protein [Vibrio cholerae]
 gi|307636647|gb|ADN79016.1| RecA protein [Vibrio cholerae C6706]
 gi|307636649|gb|ADN79017.1| RecA protein [Vibrio cholerae]
 gi|307636651|gb|ADN79018.1| RecA protein [Vibrio cholerae]
 gi|307636653|gb|ADN79019.1| RecA protein [Vibrio cholerae]
 gi|307636655|gb|ADN79020.1| RecA protein [Vibrio cholerae]
 gi|307636657|gb|ADN79021.1| RecA protein [Vibrio cholerae]
 gi|307636659|gb|ADN79022.1| RecA protein [Vibrio cholerae]
 gi|307636661|gb|ADN79023.1| RecA protein [Vibrio cholerae]
 gi|307636663|gb|ADN79024.1| RecA protein [Vibrio cholerae]
 gi|307636665|gb|ADN79025.1| RecA protein [Vibrio cholerae]
 gi|307636667|gb|ADN79026.1| RecA protein [Vibrio cholerae]
 gi|307636669|gb|ADN79027.1| RecA protein [Vibrio cholerae]
 gi|307636671|gb|ADN79028.1| RecA protein [Vibrio cholerae]
 gi|307636673|gb|ADN79029.1| RecA protein [Vibrio cholerae]
 gi|307636675|gb|ADN79030.1| RecA protein [Vibrio cholerae]
 gi|307636677|gb|ADN79031.1| RecA protein [Vibrio cholerae]
 gi|307636679|gb|ADN79032.1| RecA protein [Vibrio cholerae]
 gi|307636681|gb|ADN79033.1| RecA protein [Vibrio cholerae]
          Length = 58

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/58 (72%), Positives = 50/58 (86%)

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           + G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV
Sbjct: 1   REGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIV 58


>gi|328867696|gb|EGG16078.1| hypothetical protein DFA_09750 [Dictyostelium fasciculatum]
          Length = 412

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 126/288 (43%), Gaps = 45/288 (15%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH--TIAQSQKTGGTCA 99
           FE I+   +G   LD  L IGG P   I E+ G  S+GK+TL+L   ++ Q Q +     
Sbjct: 97  FEKIKTTPTGIASLDYKLLIGGLPFNHITELCGDSSTGKSTLSLRWMSLLQKQDSDAATL 156

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
            +D+E++  S +A K  VDL    ++ P   +   EI    +      +IV+DS  +L P
Sbjct: 157 LIDSENSFTSDWATKCNVDLDRCYVAHPKNSDDCFEILFSSLEKKLFKMIVVDSFFSLIP 216

Query: 160 RAEIEGDMGESLPGMQARL-MSQALRKLTSSISRSKCILVFINQMRMKI----------- 207
             +I      SL     +  ++ AL  L S +  S C+LV INQ+R  I           
Sbjct: 217 NPKISSKY--SLYSDDPKYTLNFALTYLKSLLKDSGCVLVIINQLRSNIIKPPSSTIKKI 274

Query: 208 -----------GVMFGSPETTTGGNALKFYSSVRLDIRR---VGSIKDKDSITGNQTRVK 253
                           +P+ +   + +   + ++++I+R   + S  D + I+G +T V 
Sbjct: 275 KIKERLELPTNNPTIDNPDISFANSIIDGLTDLKIEIQRDRYLFSSNDDEEISGIRTNVL 334

Query: 254 VVKN-------KMASPFK--------QVEFDIMYGEGISFFGELIDLG 286
           + KN       K  S  K        Q  FDI Y + I+   E+I+L 
Sbjct: 335 IKKNSLLAHSDKSISTCKYHNQLLEFQSSFDIDYIDSINDDHEIIELS 382


>gi|62002243|gb|AAX58723.1| RecA [Lactobacillus plantarum]
          Length = 68

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 44/67 (65%), Positives = 56/67 (83%)

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI D LV SGAVDI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ ++++ 
Sbjct: 2   LEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSRTLNKP 61

Query: 194 KCILVFI 200
             I +FI
Sbjct: 62  MTIALFI 68


>gi|29566686|ref|NP_818252.1| gp201 [Mycobacterium phage Bxz1]
 gi|109393385|ref|YP_656183.1| gp203 [Mycobacterium phage Catera]
 gi|203457522|ref|YP_002224868.1| gp203 [Mycobacterium phage Rizal]
 gi|203460692|ref|YP_002224426.1| gp205 [Mycobacterium phage Spud]
 gi|281416113|ref|YP_003347849.1| gp199 [Mycobacterium phage ET08]
 gi|29425411|gb|AAN16835.1| gp201 [Mycobacterium phage Bxz1]
 gi|91981207|gb|ABE67922.1| gp203 [Mycobacterium phage Catera]
 gi|197312050|gb|ACH62407.1| gp203 [Mycobacterium phage Rizal]
 gi|197312273|gb|ACH62629.1| gp205 [Mycobacterium phage Spud]
 gi|255927792|gb|ACU41413.1| gp199 [Mycobacterium phage ET08]
 gi|255928080|gb|ACU41699.1| gp204 [Mycobacterium phage LRRHood]
          Length = 362

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 148/307 (48%), Gaps = 35/307 (11%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L   LS +Q  YG+ A+M      +       V SG+L LD A+G+GG P  R++EI G 
Sbjct: 7   LAKLLSDVQNKYGENAVMMAKDMVTY----PPVRSGTLALDFAIGVGGLPSDRVIEIGGT 62

Query: 76  ESSGKTTLAL-----HTIAQSQKTGGTCAFVDAEHALDSIYARKL-GVDLKN--LLISQP 127
           E +GKTTL+L       +AQ ++       +D EH +   +A +L G +L +  ++ +QP
Sbjct: 63  EGTGKTTLSLLAMQQFLLAQPERFA---LVLDLEHKMTKDWAVQLVGEELWDDRVIYAQP 119

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D  EQA  +   LV SG +   + DS+     RA IE +  +   G  A  +++  R  +
Sbjct: 120 DHVEQATNMYSDLVGSGQICFALFDSIGGAAVRAGIEKEAEKVQVGGNANAITKFARLAS 179

Query: 188 SSISRSKCILVFINQMRMKIGVMFG-SPETTTGGNALKFYSSVRLDIRRVGSIKDK---- 242
           +  ++ +C+ V  NQ R+    M G     T GGN  K    +R  IR   S +DK    
Sbjct: 180 NFSAKYRCLTVGTNQERVD---MEGFRRYMTPGGNGWKHACILR--IRLKASTQDKVETV 234

Query: 243 ----DSITGNQTRVKVVKNKMASPFKQVEFDIM------YGEGISFFGELIDLGVKASIV 292
                 + G +   ++VKN++A+P +   + +       YG GI    E++ L +   ++
Sbjct: 235 VNGEKMVVGRKIHAQIVKNQLAAPGRSAWWWMYHVPTEEYGFGIDTLDEIVRLAILTGVI 294

Query: 293 DKSGAWF 299
            +  +++
Sbjct: 295 KQRVSYY 301


>gi|203459048|ref|YP_002224204.1| gp205 [Mycobacterium phage ScottMcG]
 gi|204305831|ref|YP_002224648.1| gp204 [Mycobacterium phage Cali]
 gi|197312495|gb|ACH62850.1| gp205 [Mycobacterium phage ScottMcG]
 gi|197312804|gb|ACH63157.1| gp204 [Mycobacterium phage Cali]
          Length = 362

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 148/307 (48%), Gaps = 35/307 (11%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L   LS +Q  YG+ A+M      +       V SG+L LD A+G+GG P  R++EI G 
Sbjct: 7   LAKLLSDVQNKYGENAVMMAKDMVTY----PPVRSGTLALDFAIGVGGLPSDRVIEIGGT 62

Query: 76  ESSGKTTLAL-----HTIAQSQKTGGTCAFVDAEHALDSIYARKL-GVDLKN--LLISQP 127
           E +GKTTL+L       +AQ ++       +D EH +   +A +L G +L +  ++ +QP
Sbjct: 63  EGTGKTTLSLLAMQQFLLAQPERFA---LVLDLEHKMTKDWAVQLVGEELWDDRVIYAQP 119

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D  EQA  +   LV SG +   + DS+     RA IE +  +   G  A  +++  R  +
Sbjct: 120 DHVEQATNMYSDLVGSGQICFALFDSIGGAAVRAGIEKEAEKVQVGGNANAITKFARLAS 179

Query: 188 SSISRSKCILVFINQMRMKIGVMFG-SPETTTGGNALKFYSSVRLDIRRVGSIKDK---- 242
           +  ++ +C+ V  NQ R+    M G     T GGN  K    +R  IR   S +DK    
Sbjct: 180 NFSAKYRCLTVGTNQERVD---MEGFRRYMTPGGNGWKHACILR--IRLKASTQDKVETV 234

Query: 243 ----DSITGNQTRVKVVKNKMASPFKQVEFDIM------YGEGISFFGELIDLGVKASIV 292
                 + G +   ++VKN++A+P +   + +       YG GI    E++ L +   ++
Sbjct: 235 VNGEKMVVGRKIHAQIVKNQLAAPGRSAWWWMYHVPTEEYGFGIDTLDEIVRLAILTGVI 294

Query: 293 DKSGAWF 299
            +  +++
Sbjct: 295 KQRVSYY 301


>gi|213852304|ref|ZP_03381836.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi
          str. M223]
          Length = 86

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 46/71 (64%), Positives = 56/71 (78%), Gaps = 2/71 (2%)

Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
          +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6  NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71 EIYGPESSGKT 81
          EIYGPESSGKT
Sbjct: 64 EIYGPESSGKT 74


>gi|239502683|ref|ZP_04661993.1| RecA-like recombinase [Acinetobacter baumannii AB900]
          Length = 734

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 20/173 (11%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVE+YGP SSGKT  A   + ++Q+ GG   F D E + D   A+ LG+  + 
Sbjct: 48  GGIPYGRIVEMYGPPSSGKTAEATDLMIRAQEAGGIAMFFDWERSFDINLAKNLGLKTER 107

Query: 122 --LLISQPDTGEQ----ALEITDMLVRSGAVD-----IIVIDSVAALTPRAEIEGDMGE- 169
              +  +P+T E+    A+   +++  S  +      I V DSVA+  P++    + G+ 
Sbjct: 108 PFWIYKKPETWEEGNVLAMRAVELIRNSATIPDDAPIICVFDSVASAIPQSVYYDNKGKK 167

Query: 170 --------SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
                   S     AR  S +L+ +  +  +     +++NQ R KIGVMFG P
Sbjct: 168 REIDTFNMSDNTALARASSTSLKVIAQTAEKYNATFLYLNQQRTKIGVMFGDP 220



 Score = 43.5 bits (101), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 7/93 (7%)

Query: 216 TTTGGNALKFYSSVRLDIRRVG---SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
            T GG++ ++Y+SVR+ + R     ++  K    G     K+VK K+  PF++    + +
Sbjct: 582 CTPGGSSFEYYASVRIALGRTKLMETVNGKKQFVGQDIATKIVKTKLTKPFQETTMRMWF 641

Query: 273 GE-GISFFG---ELIDLGVKASIVDKSGAWFSF 301
            + G++FF     L++      I+ +SGA+  +
Sbjct: 642 DKNGVAFFDRHYNLVEFLKAKGILKQSGAYIEW 674


>gi|221635933|ref|YP_002523809.1| RecA protein [Thermomicrobium roseum DSM 5159]
 gi|221158114|gb|ACM07232.1| RecA protein [Thermomicrobium roseum DSM 5159]
          Length = 357

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 125/269 (46%), Gaps = 26/269 (9%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GR++E+ GP  SGK TLA   +   Q+ GG  A++DA H++D       GV + +LL+
Sbjct: 98  PRGRLIELAGPTYSGKRTLAGWFVRSVQRAGGWVAYLDAAHSVDFDRLHHWGVAVLDLLV 157

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           + P +  +ALE+  +LV SGA+D++V+D    L P   +   +   L     R +   LR
Sbjct: 158 ALPQSVTEALELARLLVLSGALDLVVLD----LPPHLALRSALDRGL-----RQLRPLLR 208

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
            L ++         F+  +R ++     +P   T    L+     +L   R G +  +  
Sbjct: 209 GLPTA---------FVV-VRDRV----DTPALATAQVRLRLEPLTQLV--RPGPLAAQAL 252

Query: 245 ITGNQTRVKVVKNKMASPF-KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
             G +  V++ +  +  P    V  ++   EG+    E IDLG+   ++        F  
Sbjct: 253 PEGLRVHVRIERGPLWPPRDPPVPIELCLREGVRVALERIDLGLALGVIRLHSLGLVFAE 312

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLR 332
             LG+ RE + + L+ +  +   +E  +R
Sbjct: 313 TVLGRTRERAAVRLQSDPSLWSQLEEEIR 341


>gi|47717781|gb|AAT37933.1| recombinase A [Borrelia japonica]
 gi|47717783|gb|AAT37934.1| recombinase A [Borrelia japonica]
          Length = 53

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/53 (73%), Positives = 45/53 (84%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           IGG+P+GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD IYAR
Sbjct: 1   IGGYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPIYAR 53


>gi|323934231|gb|EGB30655.1| RecA protein [Escherichia coli E1520]
          Length = 779

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 104/223 (46%), Gaps = 31/223 (13%)

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV----DLKNLLISQPDTGEQA 133
           S  T LA   +  +QK  G   F+D E++ D   A   G+    D    +  QPDT E +
Sbjct: 484 SHNTFLATAAMISAQKQDGLAVFLDHENSFDVGLAVANGLNADEDDGQWVYKQPDTFEDS 543

Query: 134 LEIT---------DMLVRSGAVDIIVIDSVAALTPRAEIEG--DMGESLPGMQ------- 175
           +E+          + L+   A   IV DS+A++ P ++ E    M E     +       
Sbjct: 544 VELIGTILKLVRDEELIPESAPICIVADSLASMVPNSKAEKFEKMAEGTAKDKDQLNMND 603

Query: 176 ----ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
               AR  S     L     +    ++F+NQ+R KIGVMFG P T+ GG++ KFY+SVR+
Sbjct: 604 NTALARATSANFPTLALWARKYNACIIFLNQVRTKIGVMFGDPTTSPGGDSPKFYASVRI 663

Query: 232 DIRRVGS--IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
              R+G+  +KD     G     + +KNK+A P+ +  +   +
Sbjct: 664 ---RLGASVMKDGKEKIGQDVGAECIKNKVAPPYGKCTWKFYF 703



 Score = 39.7 bits (91), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 15/87 (17%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLA------ 84
           ++GS   I +    + +G   L+ A+     GGFP GRIVE++GP S+GK   A      
Sbjct: 15  KIGSNDEIQKVTHWIDTGFPPLNKAISGRYDGGFPCGRIVEVFGPPSAGKCVTADTMLLT 74

Query: 85  ------LHTIAQSQKTGGTCAFVDAEH 105
                 +  + + +    TC   D EH
Sbjct: 75  ERGMVTVKELFEIEGYKATCTTRDVEH 101


>gi|309797641|ref|ZP_07692028.1| RecA protein [Escherichia coli MS 145-7]
 gi|308118738|gb|EFO56000.1| RecA protein [Escherichia coli MS 145-7]
          Length = 779

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 104/223 (46%), Gaps = 31/223 (13%)

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV----DLKNLLISQPDTGEQA 133
           S  T LA   +  +QK  G   F+D E++ D   A   G+    D    +  QPDT E +
Sbjct: 484 SHNTFLATAAMISAQKQDGLAVFLDHENSFDVGLAVANGLNADEDDGQWVYKQPDTFEDS 543

Query: 134 LEIT---------DMLVRSGAVDIIVIDSVAALTPRAEIEG--DMGESLPGMQ------- 175
           +E+          + L+   A   IV DS+A++ P ++ E    M E     +       
Sbjct: 544 VELIGTILKLVRDEELIPESAPICIVADSLASMVPNSKAEKFEKMAEGTAKDKDQLNMND 603

Query: 176 ----ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
               AR  S     L     +    ++F+NQ+R KIGVMFG P T+ GG++ KFY+SVR+
Sbjct: 604 NTALARATSANFPTLALWARKYNACIIFLNQVRTKIGVMFGDPTTSPGGDSPKFYASVRI 663

Query: 232 DIRRVGS--IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
              R+G+  +KD     G     + +KNK+A P+ +  +   +
Sbjct: 664 ---RLGASVMKDGKEKIGQDVGAECIKNKVAPPYGKCTWKFYF 703



 Score = 39.7 bits (91), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 15/87 (17%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLA------ 84
           ++GS   I +    + +G   L+ A+     GGFP GRIVE++GP S+GK   A      
Sbjct: 15  KIGSNDEIQKVTHWIDTGFPPLNKAISGRYDGGFPCGRIVEVFGPPSAGKCVTADTMLLT 74

Query: 85  ------LHTIAQSQKTGGTCAFVDAEH 105
                 +  + + +    TC   D EH
Sbjct: 75  ERGMVTVKELFEIEGYKATCTTRDVEH 101


>gi|220979961|emb|CAP72153.1| Putative recombinase recA [Escherichia coli LF82]
          Length = 779

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 104/223 (46%), Gaps = 31/223 (13%)

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV----DLKNLLISQPDTGEQA 133
           S  T LA   +  +QK  G   F+D E++ D   A   G+    D    +  QPDT E +
Sbjct: 484 SHNTFLATAAMISAQKQDGLAVFLDHENSFDVGLAVANGLNADEDDGQWVYKQPDTFEDS 543

Query: 134 LEIT---------DMLVRSGAVDIIVIDSVAALTPRAEIEG--DMGESLPGMQ------- 175
           +E+          + L+   A   IV DS+A++ P ++ E    M E     +       
Sbjct: 544 VELIGTILKLVRDEELIPESAPICIVADSLASMVPNSKAEKFEKMAEGTAKDKDQLNMND 603

Query: 176 ----ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
               AR  S     L     +    ++F+NQ+R KIGVMFG P T+ GG++ KFY+SVR+
Sbjct: 604 NTALARATSANFPTLALWARKYNACIIFLNQVRTKIGVMFGDPTTSPGGDSPKFYASVRI 663

Query: 232 DIRRVGS--IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
              R+G+  +KD     G     + +KNK+A P+ +  +   +
Sbjct: 664 ---RLGASVMKDGKEKIGQDVGAECIKNKVAPPYGKCTWKFYF 703



 Score = 39.7 bits (91), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 15/87 (17%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLA------ 84
           ++GS   I +    + +G   L+ A+     GGFP GRIVE++GP S+GK   A      
Sbjct: 15  KIGSNDEIQKVTHWIDTGFPPLNKAISGRYDGGFPCGRIVEVFGPPSAGKCVTADTMLLT 74

Query: 85  ------LHTIAQSQKTGGTCAFVDAEH 105
                 +  + + +    TC   D EH
Sbjct: 75  ERGMVTVKELFEIEGHKATCTTRDVEH 101


>gi|62002241|gb|AAX58722.1| RecA [Lactobacillus plantarum]
          Length = 68

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/67 (64%), Positives = 55/67 (82%)

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI D LV SGAVDI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALR L+ ++++ 
Sbjct: 2   LEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRTLSRTLNKP 61

Query: 194 KCILVFI 200
             I +FI
Sbjct: 62  MTIALFI 68


>gi|62002245|gb|AAX58724.1| RecA [Lactobacillus plantarum]
          Length = 68

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 55/67 (82%)

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI D LV SGAVDI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALR ++ ++++ 
Sbjct: 2   LEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRTVSRTLNKP 61

Query: 194 KCILVFI 200
             I +FI
Sbjct: 62  MTIALFI 68


>gi|47717747|gb|AAT37916.1| recombinase A [Borrelia garinii]
 gi|47717749|gb|AAT37917.1| recombinase A [Borrelia garinii]
          Length = 53

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 37/53 (69%), Positives = 45/53 (84%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           IGG+P+GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   IGGYPRGRIIEIFGPESSGKTTLTLQAIAEVQKKGGIAAFIDAEHALDPVYAK 53


>gi|15723736|gb|AAL05429.1| recA protein [Borrelia garinii]
 gi|18448950|gb|AAL69972.1| recombinase A [Borrelia afzelii]
 gi|47717731|gb|AAT37908.1| recombinase A [Borrelia burgdorferi]
 gi|47717733|gb|AAT37909.1| recombinase A [Borrelia burgdorferi]
 gi|47717735|gb|AAT37910.1| recombinase A [Borrelia burgdorferi]
 gi|47717737|gb|AAT37911.1| recombinase A [Borrelia burgdorferi]
 gi|47717739|gb|AAT37912.1| recombinase A [Borrelia burgdorferi]
 gi|47717741|gb|AAT37913.1| recombinase A [Borrelia burgdorferi]
 gi|47717743|gb|AAT37914.1| recombinase A [Borrelia burgdorferi]
 gi|47717745|gb|AAT37915.1| recombinase A [Borrelia burgdorferi]
 gi|47717751|gb|AAT37918.1| recombinase A [Borrelia garinii]
 gi|47717753|gb|AAT37919.1| recombinase A [Borrelia garinii]
 gi|47717755|gb|AAT37920.1| recombinase A [Borrelia garinii]
 gi|47717759|gb|AAT37922.1| recombinase A [Borrelia garinii]
 gi|47717763|gb|AAT37924.1| recombinase A [Borrelia lusitaniae]
 gi|47717765|gb|AAT37925.1| recombinase A [Borrelia valaisiana VS116]
 gi|47717767|gb|AAT37926.1| recombinase A [Borrelia valaisiana]
 gi|47717769|gb|AAT37927.1| recombinase A [Borrelia burgdorferi]
 gi|47717771|gb|AAT37928.1| recombinase A [Borrelia afzelii]
 gi|47717773|gb|AAT37929.1| recombinase A [Borrelia afzelii]
 gi|47717775|gb|AAT37930.1| recombinase A [Borrelia afzelii]
 gi|47717777|gb|AAT37931.1| recombinase A [Borrelia afzelii]
 gi|47717779|gb|AAT37932.1| recombinase A [Borrelia afzelii]
 gi|47717791|gb|AAT37938.1| recombinase A [Borrelia andersonii]
 gi|47717793|gb|AAT37939.1| recombinase A [Borrelia lusitaniae]
 gi|47717795|gb|AAT37940.1| recombinase A [Borrelia lusitaniae]
 gi|73762256|gb|AAZ83616.1| RecA [Borrelia afzelii]
 gi|73762258|gb|AAZ83617.1| RecA [Borrelia spielmanii]
 gi|73762260|gb|AAZ83618.1| RecA [Borrelia burgdorferi]
 gi|73762262|gb|AAZ83619.1| RecA [Borrelia garinii]
 gi|89145568|gb|ABD61980.1| RecA [Borrelia burgdorferi 297]
 gi|89145570|gb|ABD61981.1| RecA [Borrelia burgdorferi]
 gi|89145572|gb|ABD61982.1| RecA [Borrelia burgdorferi]
 gi|89145574|gb|ABD61983.1| RecA [Borrelia burgdorferi]
 gi|89145576|gb|ABD61984.1| RecA [Borrelia burgdorferi]
 gi|89145578|gb|ABD61985.1| RecA [Borrelia burgdorferi]
 gi|89145580|gb|ABD61986.1| RecA [Borrelia burgdorferi]
 gi|89145582|gb|ABD61987.1| RecA [Borrelia andersonii]
 gi|89145584|gb|ABD61988.1| RecA [Borrelia andersonii]
 gi|89145588|gb|ABD61990.1| RecA [Borrelia californiensis]
 gi|89145592|gb|ABD61992.1| RecA [Borrelia californiensis]
 gi|89145594|gb|ABD61993.1| RecA [Borrelia genomosp. 1]
 gi|89145596|gb|ABD61994.1| RecA [Borrelia genomosp. 1]
 gi|89145598|gb|ABD61995.1| RecA [Borrelia genomosp. 2]
 gi|89145600|gb|ABD61996.1| RecA [Borrelia valaisiana]
 gi|89145602|gb|ABD61997.1| RecA [Borrelia valaisiana]
          Length = 53

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 37/53 (69%), Positives = 45/53 (84%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           IGG+P+GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   IGGYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAK 53


>gi|47717757|gb|AAT37921.1| recombinase A [Borrelia garinii]
          Length = 53

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/53 (69%), Positives = 45/53 (84%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           IGG+P+GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   IGGYPRGRIIEIFGPESSGKTTLILQAIAEVQKEGGIAAFIDAEHALDPVYAK 53


>gi|47717785|gb|AAT37935.1| recombinase A [Borrelia bissettii]
 gi|47717787|gb|AAT37936.1| recombinase A [Borrelia bissettii]
 gi|47717789|gb|AAT37937.1| recombinase A [Borrelia bissettii]
          Length = 53

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/53 (67%), Positives = 45/53 (84%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           IGG+P+GR++EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   IGGYPRGRVIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAK 53


>gi|226377784|ref|YP_002790833.1| putative recombinase A [Lactobacillus phage Lb338-1]
 gi|225921562|gb|ACO37075.1| putative recombinase A [Lactobacillus phage Lb338-1]
          Length = 400

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 110/236 (46%), Gaps = 24/236 (10%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRI EIY PE  GK+T  ++    +   G    ++DAE   D     +LGVD  +
Sbjct: 50  GGIPFGRITEIYAPEQVGKSTFMIYLNRVASALGADTFWLDAEGTSDGDRMEELGVDPAH 109

Query: 122 LLISQPDTG-------EQALEITDMLVRSGAVD--------IIVIDSVAALTPRAEIEGD 166
             I  PD         EQ     + ++ +   D        +++ DS+     +AE   D
Sbjct: 110 TFIYSPDKNNGESLNVEQVGATIENIINTYKDDESRKDTPLLVIWDSIGGTITQAEQNTD 169

Query: 167 MGES-LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG-SPETTT-GGNAL 223
            GE    G QA  +++ +RK+T  +      LV INQ+R     M   +P+T   GG AL
Sbjct: 170 FGEEGQRGRQAAAVTKLVRKITPMLRDVNIALVAINQVRANQDAMNKYAPKTIAGGGEAL 229

Query: 224 KFYSSVRLDIRRVGSIKDK------DSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           K   ++RL++ +   IK K      D+  G+   +K+ K+K + P ++ +  ++ G
Sbjct: 230 KHADALRLELAKSTQIKGKYKGESDDTYEGHLITMKIDKSKQSRPHQKAQAALLAG 285


>gi|313185507|gb|ADR50318.1| recombinase A [Borrelia burgdorferi]
          Length = 51

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/51 (70%), Positives = 44/51 (86%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G+P+GRI+EI+GPESSGKTTL L  IA+ QK GGT AF+DAEHALD +YA+
Sbjct: 1   GYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGTAAFIDAEHALDPVYAK 51


>gi|93278389|gb|ABF06625.1| RecA [Mycobacterium barrassiae]
          Length = 95

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/75 (48%), Positives = 58/75 (77%)

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           + EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG+EN++ FL EN+++A
Sbjct: 3   RAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGKENARKFLLENVDVA 62

Query: 325 ENIESLLRQNAGLVA 339
             IE  +++  G+ A
Sbjct: 63  NEIEKKIKEKLGIGA 77


>gi|47717761|gb|AAT37923.1| recombinase A [Borrelia garinii]
          Length = 53

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/53 (67%), Positives = 45/53 (84%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           IGG+P+GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHAL+ +YA+
Sbjct: 1   IGGYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALNPVYAK 53


>gi|328466733|gb|EGF37858.1| recombinase A [Lactobacillus rhamnosus MTCC 5462]
          Length = 74

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 57/76 (75%), Gaps = 2/76 (2%)

Query: 7  MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
          M   ++ +AL  AL +I++ +GKGAIM++G +  +   +  VSSGSL +D ALG+GG P+
Sbjct: 1  MAETERQEALATALKKIEKNFGKGAIMRMGDK--VETRVSAVSSGSLAIDDALGVGGLPR 58

Query: 67 GRIVEIYGPESSGKTT 82
          GRIVEIYGPESSGKTT
Sbjct: 59 GRIVEIYGPESSGKTT 74


>gi|313185491|gb|ADR50310.1| recombinase A [Borrelia burgdorferi]
          Length = 51

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/51 (68%), Positives = 44/51 (86%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G+P+GRI+EI+GPESSGKTTLA+  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   GYPRGRIIEIFGPESSGKTTLAIQAIAEVQKEGGIAAFIDAEHALDPVYAK 51


>gi|313185489|gb|ADR50309.1| recombinase A [Borrelia burgdorferi]
 gi|313185493|gb|ADR50311.1| recombinase A [Borrelia burgdorferi]
          Length = 51

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/51 (68%), Positives = 44/51 (86%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G+P+GR++EI+GPESSGKTTLAL  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   GYPRGRMIEIFGPESSGKTTLALQAIAEVQKEGGIAAFIDAEHALDPVYAK 51


>gi|313185469|gb|ADR50299.1| recombinase A [Borrelia burgdorferi]
          Length = 51

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 36/51 (70%), Positives = 43/51 (84%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G+P+GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD IYA+
Sbjct: 1   GYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPIYAK 51


>gi|313185439|gb|ADR50284.1| recombinase A [Borrelia burgdorferi]
          Length = 51

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 35/51 (68%), Positives = 44/51 (86%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G+P+GRI+EI+GPESSGKTTL L +IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   GYPRGRIIEIFGPESSGKTTLTLQSIAEVQKEGGIAAFIDAEHALDPVYAK 51


>gi|313185523|gb|ADR50326.1| recombinase A [Borrelia burgdorferi]
          Length = 51

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 35/51 (68%), Positives = 43/51 (84%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G+P+GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   GYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGVAAFIDAEHALDPVYAK 51


>gi|313185471|gb|ADR50300.1| recombinase A [Borrelia burgdorferi]
 gi|313185473|gb|ADR50301.1| recombinase A [Borrelia burgdorferi]
 gi|313185475|gb|ADR50302.1| recombinase A [Borrelia burgdorferi]
 gi|313185477|gb|ADR50303.1| recombinase A [Borrelia burgdorferi]
          Length = 51

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 36/51 (70%), Positives = 43/51 (84%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G+P+GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD IYA+
Sbjct: 1   GYPRGRIIEIFGPESSGKTTLTLKAIAEVQKEGGIAAFIDAEHALDPIYAK 51


>gi|78482940|emb|CAJ20135.1| recA protein [Borrelia spielmanii]
 gi|78482942|emb|CAJ20136.1| recA protein [Borrelia spielmanii]
 gi|313185435|gb|ADR50282.1| recombinase A [Borrelia burgdorferi]
 gi|313185437|gb|ADR50283.1| recombinase A [Borrelia burgdorferi]
 gi|313185481|gb|ADR50305.1| recombinase A [Borrelia burgdorferi]
 gi|313185483|gb|ADR50306.1| recombinase A [Borrelia burgdorferi]
 gi|313185485|gb|ADR50307.1| recombinase A [Borrelia burgdorferi]
 gi|313185487|gb|ADR50308.1| recombinase A [Borrelia burgdorferi]
 gi|313185495|gb|ADR50312.1| recombinase A [Borrelia burgdorferi]
 gi|313185497|gb|ADR50313.1| recombinase A [Borrelia burgdorferi]
 gi|313185499|gb|ADR50314.1| recombinase A [Borrelia burgdorferi]
 gi|313185501|gb|ADR50315.1| recombinase A [Borrelia burgdorferi]
 gi|313185503|gb|ADR50316.1| recombinase A [Borrelia burgdorferi]
 gi|313185505|gb|ADR50317.1| recombinase A [Borrelia burgdorferi]
 gi|313185509|gb|ADR50319.1| recombinase A [Borrelia burgdorferi]
 gi|313185511|gb|ADR50320.1| recombinase A [Borrelia burgdorferi]
 gi|313185515|gb|ADR50322.1| recombinase A [Borrelia burgdorferi]
 gi|313185517|gb|ADR50323.1| recombinase A [Borrelia burgdorferi]
 gi|313185519|gb|ADR50324.1| recombinase A [Borrelia burgdorferi]
 gi|313185521|gb|ADR50325.1| recombinase A [Borrelia burgdorferi]
 gi|313185525|gb|ADR50327.1| recombinase A [Borrelia burgdorferi]
 gi|313185527|gb|ADR50328.1| recombinase A [Borrelia burgdorferi]
 gi|313185529|gb|ADR50329.1| recombinase A [Borrelia burgdorferi]
 gi|313185531|gb|ADR50330.1| recombinase A [Borrelia burgdorferi]
 gi|313185533|gb|ADR50331.1| recombinase A [Borrelia burgdorferi]
 gi|313185535|gb|ADR50332.1| recombinase A [Borrelia burgdorferi]
 gi|313185537|gb|ADR50333.1| recombinase A [Borrelia burgdorferi]
 gi|313185539|gb|ADR50334.1| recombinase A [Borrelia burgdorferi]
 gi|313185541|gb|ADR50335.1| recombinase A [Borrelia burgdorferi]
 gi|313185543|gb|ADR50336.1| recombinase A [Borrelia burgdorferi]
 gi|313185545|gb|ADR50337.1| recombinase A [Borrelia burgdorferi]
 gi|313185549|gb|ADR50339.1| recombinase A [Borrelia burgdorferi]
 gi|313185551|gb|ADR50340.1| recombinase A [Borrelia burgdorferi]
 gi|313185553|gb|ADR50341.1| recombinase A [Borrelia burgdorferi]
 gi|313185555|gb|ADR50342.1| recombinase A [Borrelia burgdorferi]
 gi|313185557|gb|ADR50343.1| recombinase A [Borrelia burgdorferi]
 gi|313185559|gb|ADR50344.1| recombinase A [Borrelia burgdorferi]
 gi|313185561|gb|ADR50345.1| recombinase A [Borrelia burgdorferi]
 gi|313185563|gb|ADR50346.1| recombinase A [Borrelia burgdorferi]
 gi|313185565|gb|ADR50347.1| recombinase A [Borrelia burgdorferi]
 gi|313185567|gb|ADR50348.1| recombinase A [Borrelia burgdorferi]
 gi|313185569|gb|ADR50349.1| recombinase A [Borrelia burgdorferi]
 gi|313185571|gb|ADR50350.1| recombinase A [Borrelia burgdorferi]
 gi|313185573|gb|ADR50351.1| recombinase A [Borrelia burgdorferi]
 gi|313185575|gb|ADR50352.1| recombinase A [Borrelia burgdorferi]
          Length = 51

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 35/51 (68%), Positives = 43/51 (84%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G+P+GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   GYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAK 51


>gi|313185365|gb|ADR50247.1| recombinase A [Borrelia burgdorferi]
 gi|313185367|gb|ADR50248.1| recombinase A [Borrelia burgdorferi]
 gi|313185369|gb|ADR50249.1| recombinase A [Borrelia burgdorferi]
 gi|313185371|gb|ADR50250.1| recombinase A [Borrelia burgdorferi]
 gi|313185373|gb|ADR50251.1| recombinase A [Borrelia burgdorferi]
 gi|313185375|gb|ADR50252.1| recombinase A [Borrelia burgdorferi]
 gi|313185377|gb|ADR50253.1| recombinase A [Borrelia burgdorferi]
 gi|313185379|gb|ADR50254.1| recombinase A [Borrelia burgdorferi]
 gi|313185381|gb|ADR50255.1| recombinase A [Borrelia burgdorferi]
 gi|313185383|gb|ADR50256.1| recombinase A [Borrelia burgdorferi]
 gi|313185385|gb|ADR50257.1| recombinase A [Borrelia burgdorferi]
 gi|313185387|gb|ADR50258.1| recombinase A [Borrelia burgdorferi]
 gi|313185389|gb|ADR50259.1| recombinase A [Borrelia burgdorferi]
 gi|313185391|gb|ADR50260.1| recombinase A [Borrelia burgdorferi]
 gi|313185393|gb|ADR50261.1| recombinase A [Borrelia burgdorferi]
 gi|313185395|gb|ADR50262.1| recombinase A [Borrelia burgdorferi]
 gi|313185397|gb|ADR50263.1| recombinase A [Borrelia burgdorferi]
 gi|313185399|gb|ADR50264.1| recombinase A [Borrelia burgdorferi]
 gi|313185401|gb|ADR50265.1| recombinase A [Borrelia burgdorferi]
 gi|313185403|gb|ADR50266.1| recombinase A [Borrelia burgdorferi]
 gi|313185405|gb|ADR50267.1| recombinase A [Borrelia burgdorferi]
 gi|313185407|gb|ADR50268.1| recombinase A [Borrelia burgdorferi]
 gi|313185409|gb|ADR50269.1| recombinase A [Borrelia burgdorferi]
 gi|313185411|gb|ADR50270.1| recombinase A [Borrelia burgdorferi]
 gi|313185413|gb|ADR50271.1| recombinase A [Borrelia burgdorferi]
 gi|313185415|gb|ADR50272.1| recombinase A [Borrelia burgdorferi]
 gi|313185417|gb|ADR50273.1| recombinase A [Borrelia burgdorferi]
 gi|313185419|gb|ADR50274.1| recombinase A [Borrelia burgdorferi]
          Length = 51

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/51 (68%), Positives = 43/51 (84%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G+P+GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   GYPRGRIIEIFGPESSGKTTLILQAIAEVQKEGGIAAFIDAEHALDPVYAK 51


>gi|313185479|gb|ADR50304.1| recombinase A [Borrelia burgdorferi]
          Length = 51

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/51 (68%), Positives = 43/51 (84%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G+P+GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   GYPRGRIIEIFGPESSGKTTLTLKAIAEVQKEGGIAAFIDAEHALDPVYAK 51


>gi|313185441|gb|ADR50285.1| recombinase A [Borrelia burgdorferi]
          Length = 51

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/51 (66%), Positives = 43/51 (84%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G+P+GRI+E++GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   GYPRGRIIEVFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAK 51


>gi|89145586|gb|ABD61989.1| RecA [Borrelia andersonii]
          Length = 53

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/53 (67%), Positives = 44/53 (83%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           IGG+P+GRI+EI+G ESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   IGGYPRGRIIEIFGLESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAK 53


>gi|313185445|gb|ADR50287.1| recombinase A [Borrelia burgdorferi]
 gi|313185447|gb|ADR50288.1| recombinase A [Borrelia burgdorferi]
 gi|313185449|gb|ADR50289.1| recombinase A [Borrelia burgdorferi]
 gi|313185451|gb|ADR50290.1| recombinase A [Borrelia burgdorferi]
 gi|313185453|gb|ADR50291.1| recombinase A [Borrelia burgdorferi]
 gi|313185455|gb|ADR50292.1| recombinase A [Borrelia burgdorferi]
 gi|313185457|gb|ADR50293.1| recombinase A [Borrelia burgdorferi]
 gi|313185459|gb|ADR50294.1| recombinase A [Borrelia burgdorferi]
 gi|313185461|gb|ADR50295.1| recombinase A [Borrelia burgdorferi]
 gi|313185463|gb|ADR50296.1| recombinase A [Borrelia burgdorferi]
 gi|313185465|gb|ADR50297.1| recombinase A [Borrelia burgdorferi]
 gi|313185467|gb|ADR50298.1| recombinase A [Borrelia burgdorferi]
          Length = 51

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/51 (66%), Positives = 42/51 (82%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G+P+GRI+EI+GPESSGK TL L  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   GYPRGRIIEIFGPESSGKATLTLQAIAEVQKEGGIAAFIDAEHALDPVYAK 51


>gi|313185547|gb|ADR50338.1| recombinase A [Borrelia burgdorferi]
          Length = 51

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/51 (66%), Positives = 42/51 (82%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G+P+GRI+EI+ PESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   GYPRGRIIEIFAPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAK 51


>gi|313185421|gb|ADR50275.1| recombinase A [Borrelia burgdorferi]
 gi|313185423|gb|ADR50276.1| recombinase A [Borrelia burgdorferi]
 gi|313185425|gb|ADR50277.1| recombinase A [Borrelia burgdorferi]
 gi|313185427|gb|ADR50278.1| recombinase A [Borrelia burgdorferi]
 gi|313185429|gb|ADR50279.1| recombinase A [Borrelia burgdorferi]
          Length = 51

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/51 (66%), Positives = 42/51 (82%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G+P+GRI+EI+ PESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   GYPRGRIIEIFSPESSGKTTLTLQAIAEVQKEGGMAAFIDAEHALDPVYAK 51


>gi|289803584|ref|ZP_06534213.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 93

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 52/64 (81%)

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+ N+  +L+EN   A+ IE 
Sbjct: 3   ILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATTWLKENPATAKEIEK 62

Query: 330 LLRQ 333
            +R+
Sbjct: 63  RVRE 66


>gi|313185513|gb|ADR50321.1| recombinase A [Borrelia burgdorferi]
          Length = 51

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 34/51 (66%), Positives = 42/51 (82%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G+P+ RI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   GYPRRRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAK 51


>gi|313185433|gb|ADR50281.1| recombinase A [Borrelia burgdorferi]
          Length = 51

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 34/51 (66%), Positives = 43/51 (84%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G+P+GRI+EI+G ESSGKTTL L +IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   GYPRGRIIEIFGTESSGKTTLTLQSIAEVQKEGGIAAFIDAEHALDPVYAK 51


>gi|309808700|ref|ZP_07702590.1| RecA domain protein [Lactobacillus iners LactinV 01V1-a]
 gi|308168061|gb|EFO70189.1| RecA domain protein [Lactobacillus iners LactinV 01V1-a]
          Length = 72

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/49 (65%), Positives = 43/49 (87%)

Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
          I  +S+GS+ LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK
Sbjct: 3  ISTISTGSIALDTALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQK 51


>gi|89145590|gb|ABD61991.1| RecA [Borrelia californiensis]
          Length = 53

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/53 (64%), Positives = 43/53 (81%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           +GG+P+GRI+EI+GPE  GKTTL L  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   LGGYPRGRIIEIFGPELFGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAK 53


>gi|18202888|sp|Q9F416|RECA_MYCFA RecName: Full=Protein RecA; AltName: Full=Recombinase A; Contains:
           RecName: Full=Mfa RecA intein
 gi|10241732|emb|CAC09589.1| RecA protein [Mycobacterium fallax]
          Length = 422

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 59/88 (67%), Gaps = 2/88 (2%)

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIR 234
           AR++   ++  T S++R   I V  N      GVM   SPETTTGG ALKFY+SVR+D+R
Sbjct: 336 ARVLDVQVKPRTRSMNRFD-IEVEGNHNYFVDGVMVHNSPETTTGGKALKFYASVRMDVR 394

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASP 262
           R+ ++KD     GN+TRVKVVKNK++ P
Sbjct: 395 RIETLKDGSDAVGNRTRVKVVKNKVSPP 422


>gi|66391274|ref|YP_238613.1| ORF019 [Staphylococcus phage Twort]
 gi|62637204|gb|AAX92315.1| ORF019 [Staphylococcus phage Twort]
          Length = 407

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 122/272 (44%), Gaps = 33/272 (12%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GR+ E+YG  +SGK+T A+H    + + G    ++D E   D+    +LGVD+  
Sbjct: 54  GGIPLGRLTEVYGLNASGKSTFAVHLSRITTQLGVITVWIDIEGTADNRRMEQLGVDVSK 113

Query: 122 LLISQPDTG--EQALEITDMLV--------------RSGAVDIIVIDSVAALTPRAEIEG 165
           L   Q   G  +  +E++   V                G   + + DS+       EI+G
Sbjct: 114 LFSIQAGEGRLKNTVELSIETVGKELEYWIDTFNEKLPGVPILFIWDSLGGTRTDEEIKG 173

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR--MKIGVMFGSPETTTGGNAL 223
            +     G++A    + +  +T  ++ +   ++ INQ R  + +   +  P  +TGG A 
Sbjct: 174 GIDTKKLGIRASSAQKVINAITPKLNETNTGVLIINQARDNLNMSNPYDDPIKSTGGRAF 233

Query: 224 KFYSSVRLDIRRVGSIKD-----KDSITGNQTRVKVVKNKMASPFKQVEFDIMYG----- 273
           +  +S+R+ + +   IK      KD  +G+  R++  K+K++ P ++ E  ++       
Sbjct: 234 EHAASLRIKVNKGAQIKQAKASGKDEYSGHIMRIETKKSKLSRPNQKAEAHLLSEWELSD 293

Query: 274 ----EGISFFGELIDLGVKASIVDKSGAWFSF 301
                G+     +    V+  ++ K GAW ++
Sbjct: 294 GTLLNGLDLHNVVYQEAVEKGLITK-GAWRNY 324


>gi|18202887|sp|Q9F415|RECA_MYCFV RecName: Full=Protein RecA; AltName: Full=Recombinase A; Contains:
           RecName: Full=Mfl RecA intein
 gi|10241728|emb|CAC09590.1| RecA protein [Mycobacterium flavescens]
          Length = 423

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 59/88 (67%), Gaps = 2/88 (2%)

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIR 234
           AR++   ++  T S++R   I V  N      GVM   SPETTTGG ALKFY+SVR+D+R
Sbjct: 337 ARILDVHVKPHTRSMNRFD-IEVEGNHNYFVDGVMVHNSPETTTGGKALKFYASVRMDVR 395

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASP 262
           R+ ++KD     GN+TRVKVVKNK++ P
Sbjct: 396 RIETLKDGXDAVGNRTRVKVVKNKVSPP 423


>gi|18202885|sp|Q9F410|RECA_MYCSH RecName: Full=Protein RecA; AltName: Full=Recombinase A; Contains:
           RecName: Full=Msh RecA intein
 gi|10241810|emb|CAC09592.1| RecA protein [Mycobacterium shimoidei]
          Length = 423

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 60/90 (66%), Gaps = 2/90 (2%)

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLD 232
           + AR++   ++  T S++R   I V  N      GVM   SPETTTGG ALKFY+SVR+D
Sbjct: 335 VPARILDVHVKPHTRSMNRFD-IEVEGNHNYFVDGVMVHNSPETTTGGKALKFYASVRMD 393

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RR+ ++KD     GN+TRVKVVKNK++ P
Sbjct: 394 VRRIETLKDGTDAVGNRTRVKVVKNKVSPP 423


>gi|15705847|gb|AAL05847.1| RecA [Burkholderia cepacia]
          Length = 85

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/83 (56%), Positives = 55/83 (66%), Gaps = 2/83 (2%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLG-LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           +IM++G  G   E I+VVS+GSLG    A          +VEIYGPESSGKTTL L  IA
Sbjct: 1   SIMRMG-DGEAAEDIQVVSTGSLGSRHRAGASAACRAAGVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYA 112
           + QK GGT AF+DAEHALD  YA
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYA 82


>gi|87122442|ref|ZP_01078322.1| hypothetical protein MED121_19936 [Marinomonas sp. MED121]
 gi|86162235|gb|EAQ63520.1| hypothetical protein MED121_19936 [Marinomonas sp. MED121]
          Length = 67

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/62 (67%), Positives = 51/62 (82%), Gaps = 2/62 (3%)

Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
          K KAL+AALSQI+R +GKGAIM++G +G+  + IE VS+GSLGLDIALG GG P GRI E
Sbjct: 8  KKKALDAALSQIERQFGKGAIMKMG-EGAKLD-IETVSTGSLGLDIALGAGGLPFGRICE 65

Query: 72 IY 73
          IY
Sbjct: 66 IY 67


>gi|313185431|gb|ADR50280.1| recombinase A [Borrelia burgdorferi]
          Length = 51

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 33/51 (64%), Positives = 41/51 (80%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G+P+GRI+EI+G ESSGK TL L  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   GYPRGRIIEIFGSESSGKNTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAK 51


>gi|226328744|ref|ZP_03804262.1| hypothetical protein PROPEN_02644 [Proteus penneri ATCC 35198]
 gi|225201930|gb|EEG84284.1| hypothetical protein PROPEN_02644 [Proteus penneri ATCC 35198]
          Length = 93

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/94 (41%), Positives = 65/94 (69%), Gaps = 6/94 (6%)

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
           MYGEGI+ FGELIDLGVK  +V+K+GAW+S+ G+++GQG+ N+  +L+E+ E+   + + 
Sbjct: 1   MYGEGINTFGELIDLGVKHKLVEKAGAWYSYNGEKIGQGKANATTYLKEHPEMYNELNTK 60

Query: 331 LRQ----NAGLVADSLLQEPAINTKDDADKDDTD 360
           LR+    +AG    +   + A ++ D AD ++T+
Sbjct: 61  LREMLLNHAGEFTSA--ADFANDSDDAADIEETE 92


>gi|18202884|sp|Q9F407|RECA_MYCTH RecName: Full=Protein RecA; AltName: Full=Recombinase A; Contains:
           RecName: Full=Mth RecA intein
 gi|10241812|emb|CAC09593.1| RecA protein [Mycobacterium thermoresistibile]
          Length = 424

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 58/90 (64%), Gaps = 2/90 (2%)

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLD 232
           + AR++   +   T S++R   I V  N      GVM   SPETTTGG ALKFY+SVR+D
Sbjct: 336 VPARILDVHVEPHTRSMNRYD-IEVEGNHNYFVDGVMVHNSPETTTGGKALKFYASVRID 394

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RR+ ++KD     GN+TR K+VKNK++ P
Sbjct: 395 VRRIETLKDGTEAVGNRTRAKIVKNKVSPP 424


>gi|18202889|sp|Q9F417|RECA_MYCCI RecName: Full=Protein RecA; AltName: Full=Recombinase A; Contains:
           RecName: Full=Mch RecA intein
 gi|10241730|emb|CAC09588.1| RecA protein [Mycobacterium chitae]
          Length = 423

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 59/90 (65%), Gaps = 2/90 (2%)

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLD 232
           + AR++   ++  T S++R   I V  N      GVM   SPETTTGG ALKFY+SVR+D
Sbjct: 335 VPARILDIHVKPHTRSMNRFD-IEVEGNHNYFVDGVMVHNSPETTTGGKALKFYASVRID 393

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RR+ ++KD     GN+TR K+VKNK++ P
Sbjct: 394 VRRIETLKDGTDAVGNRTRAKIVKNKVSPP 423


>gi|328475000|gb|EGF45792.1| recombinase A [Listeria monocytogenes 220]
          Length = 88

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 49/63 (77%)

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
           MYGEGIS  GEL+D+  +  +++KSG+W+S+K +R+GQGREN+K +L+E+ +I + I   
Sbjct: 1   MYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGRENAKQYLKEHTDIRDEISKR 60

Query: 331 LRQ 333
           +R+
Sbjct: 61  VRE 63


>gi|313185443|gb|ADR50286.1| recombinase A [Borrelia burgdorferi]
          Length = 51

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/51 (64%), Positives = 41/51 (80%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G+P+ RI+EI+GPESS KTTL L  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   GYPRRRIIEIFGPESSCKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAK 51


>gi|315023731|gb|EFT36734.1| recA protein [Riemerella anatipestifer RA-YM]
 gi|325336469|gb|ADZ12743.1| RecA2 [Riemerella anatipestifer RA-GD]
          Length = 63

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 45/58 (77%)

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +V+++KNK+A PFKQ EFDIMYGEGIS  GE++   V+  IV KSG+WFS+K  +L Q
Sbjct: 2   KVEIIKNKIAPPFKQAEFDIMYGEGISKTGEILVQAVELGIVKKSGSWFSYKDTKLDQ 59


>gi|84489183|ref|YP_447415.1| DNA repair and recombination protein RadB [Methanosphaera
           stadtmanae DSM 3091]
 gi|121731871|sp|Q2NHD1|RADB_METST RecName: Full=DNA repair and recombination protein radB
 gi|84372502|gb|ABC56772.1| RadB [Methanosphaera stadtmanae DSM 3091]
          Length = 232

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 114/229 (49%), Gaps = 32/229 (13%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL-----DS 109
           LD  LG GG  KG I + YGP  SGKT +AL  + ++ K G    ++D E  L       
Sbjct: 19  LDKLLG-GGIEKGCITQFYGPPGSGKTNIALKILYEATKNGSKAIYMDTEGGLSLERIQQ 77

Query: 110 IYARKLGVDLKNLLISQPDT-GEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           I     G   KN+ I +P +  EQ L+I    D+L +  ++D+++IDS+ AL  R E +G
Sbjct: 78  IAGTDFGSISKNIYILEPKSFDEQILDIQNIEDILKKDKSIDMLIIDSIVALY-RVE-DG 135

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE---TTTGGNA 222
           D  E +     RLM++ LR     +SR   + + I     +I   F S +      GG  
Sbjct: 136 DPSE-INKRLGRLMAKLLR-----LSREYNVAIVITN---QIYSPFDSDDLIIEPIGGTV 186

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           LK++S + ++I      K  DS+    T   + ++K  +P + ++F+I+
Sbjct: 187 LKYWSKIIIEIE-----KSVDSLKRTAT---LQRHKTKAPGQSIKFEII 227


>gi|2500094|sp|Q54428|RECA_SPIME RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|1236436|gb|AAC44644.1| RecA [Spiroplasma melliferum]
          Length = 77

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 52/66 (78%), Gaps = 2/66 (3%)

Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
          +D+ + L+  + +I++ YGKGAIM+LG + ++   IE VS+GSL LD A+G+GG+PKGRI
Sbjct: 14 LDQDEILKTVMKEIEKTYGKGAIMKLGDKSNLT--IEAVSTGSLLLDEAIGVGGYPKGRI 71

Query: 70 VEIYGP 75
          +EI+GP
Sbjct: 72 IEIFGP 77


>gi|56693101|ref|YP_164688.1| recombinase A [Lactobacillus phage LP65]
 gi|54633602|gb|AAV35873.1| recombinase A [Lactobacillus phage LP65]
          Length = 405

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 121/265 (45%), Gaps = 26/265 (9%)

Query: 61  IGGFPK-GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           + G P  GR+ E++G  SSGK+TL    +  + K      + D E  +DS     LGVD 
Sbjct: 46  VSGIPSSGRVTEVFGLPSSGKSTLMGLVMKNALKMNVIPIYFDVEETMDSERLEGLGVDP 105

Query: 120 KNLLISQPDTGEQAL-------EITDMLVRSGA---------VDIIVIDSVAALTPRAEI 163
             ++   P+  +          EIT+ +V   A           + +IDSV     + E 
Sbjct: 106 SKVITVTPEINKDNTVTPLYIEEITNYIVNMAAKIHSQSSELTSMFIIDSVGFTQSKLEA 165

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR--MKIGVMFGSPETTTGGN 221
             D   +  G QA+ ++   RK+ +++S +  +L+ +NQ R  MK      +   + GG 
Sbjct: 166 NTDSESATVGQQAKALAIMARKVQANLSYNNGMLIGLNQGRDDMKAPNPKYAQTKSLGGK 225

Query: 222 ALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQ-VEFDIMYGEGI 276
             + ++S RL I++  +IK    DK+++ G  T+V VVK+K+       V   ++   G 
Sbjct: 226 GWEHFTSSRLRIQKTTAIKMHNSDKNAV-GFDTKVTVVKSKVGDNVTDAVTIKLLGARGF 284

Query: 277 SFFGELIDLGVKASIVDKSGAWFSF 301
                +   GV   I+  SG W+++
Sbjct: 285 DRETNIFYGGVDEGIIKGSG-WYTY 308


>gi|255513422|gb|EET89688.1| DNA repair and recombination protein RadA [Candidatus Micrarchaeum
           acidiphilum ARMAN-2]
          Length = 316

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 102/206 (49%), Gaps = 24/206 (11%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ----KTG--GTCAFV 101
           +S+ S  LD  +G GG     I E+YG  +SGKT LA      +Q    K G  G   F+
Sbjct: 85  ISTNSKDLDELIG-GGIEINAITEVYGKFASGKTQLAFQLAVNAQLPKDKGGVDGKVLFI 143

Query: 102 DAE-----HALDSIYARKLGVD----LKNLLISQPDTGEQ---ALEITDMLVRSGAVDII 149
           D E       ++ I A+  G+D    L+N+++ +  + E+    +E  D L+R   + +I
Sbjct: 144 DTEGTFRPERIEEI-AKAKGIDPKTALENIMVVRATSSEKQMLTIERADSLIREKGIKLI 202

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           +IDS+ AL  RAE    +G    G + + ++  + KL     +    +   NQ+    G+
Sbjct: 203 IIDSLTALF-RAEF---LGRGALGERQQKLNSHMHKLQQLADKYDVAVYVTNQVMDNPGI 258

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRR 235
           +FG P T  GGN +   +++RL IR+
Sbjct: 259 LFGDPTTPIGGNIIAHAATLRLYIRK 284


>gi|116626079|ref|YP_828235.1| RecA domain-containing protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229241|gb|ABJ87950.1| RecA domain protein [Candidatus Solibacter usitatus Ellin6076]
          Length = 224

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 17/158 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E+V +G   +D A   GG P+G + EI GP SSG+T+L L  +A +     TCA VDAE 
Sbjct: 27  ELVPTGVADVDSA--TGGLPRGCLTEIVGPASSGRTSLLLSILAAATARQETCALVDAED 84

Query: 106 ALDSIYARKLGVDLKNLL-ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           A     A   GV L  LL +    + E AL+  D+L++ G   ++V+             
Sbjct: 85  AFAPHSAADAGVQLSRLLWVRCGHSAEHALKAADLLIQGGGFGLVVM------------- 131

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
            D+G++ P    R+   +  +L  ++  +  +L+ I +
Sbjct: 132 -DLGDTAPATARRISLTSWFRLRRAVEHTPTVLLSIAR 168


>gi|148978204|ref|ZP_01814734.1| recombinase A [Vibrionales bacterium SWAT-3]
 gi|145962626|gb|EDK27902.1| recombinase A [Vibrionales bacterium SWAT-3]
          Length = 64

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 48/63 (76%), Gaps = 2/63 (3%)

Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
          +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4  NKQKALAAALGQIEKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71 EIY 73
          E+Y
Sbjct: 62 EVY 64


>gi|328477892|gb|EGF47843.1| RecA recombinase [Lactobacillus rhamnosus MTCC 5462]
          Length = 145

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 58/91 (63%), Gaps = 4/91 (4%)

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS----IVDKSGAWFSFKGQR 305
           +++KV KNK+A PFK VE  + +G GI    ++I+L         ++ KSG+W+++  +R
Sbjct: 5   SKLKVTKNKVAPPFKTVETTMSFGHGIEHNTDMINLATDKDNDLDVITKSGSWYNYGKER 64

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAG 336
           LGQG  N+  +L E+ E+++ IE+ +R+ + 
Sbjct: 65  LGQGLVNASHYLDEHPEVSKEIEAKIREQSA 95


>gi|108763253|ref|YP_632171.1| putative RecA protein [Myxococcus xanthus DK 1622]
 gi|108467133|gb|ABF92318.1| putative recA protein [Myxococcus xanthus DK 1622]
          Length = 290

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 65/115 (56%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           + V+ +G   +D  L  GG P G++VE+ G  +SG+T+LALH +A + +    CA+VD  
Sbjct: 36  LAVLRTGLSAVDALLPTGGLPLGQVVELCGEAASGRTSLALHAVAAAHQEARLCAWVDGP 95

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             L S  A  LGVDL+ LLI +P   EQ +     L RSGA   +V+D    + P
Sbjct: 96  RELYSPSAAALGVDLERLLIVRPQASEQRIWAAVQLARSGAFACVVLDLTRGMNP 150


>gi|94971071|ref|YP_593119.1| RecA/RadA recombinase-like [Candidatus Koribacter versatilis
           Ellin345]
 gi|94553121|gb|ABF43045.1| RecA/RadA recombinase-like protein [Candidatus Koribacter
           versatilis Ellin345]
          Length = 252

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 15/161 (9%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           V ++G   LD   G GG P G + E++GPE SG+T++AL  +AQ  + G  CA++D   +
Sbjct: 33  VQTTGIAALDRLTG-GGLPVGAVCELFGPECSGRTSVALAFLAQITREGTACAWIDVADS 91

Query: 107 LDSIYARKLGVDLKNLLISQPDTGE-------------QALEITDMLVRSGAVDIIVIDS 153
           LD   A   GVDL+ LL  +    E             QAL   D+++++G    +V D 
Sbjct: 92  LDPESAAACGVDLRRLLWVRCSDAETRRARGKMWSRLDQALRAADLVLQAGGFGAVVFD- 150

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           + A+ P   +   +        A   +QA   L S +S +K
Sbjct: 151 MGAVPPEKALRVPLASWFRFRAAAERTQATFLLLSQVSCAK 191


>gi|157829762|pdb|1AA3|A Chain A, C-Terminal Domain Of The E. Coli Reca, Nmr, Minimized
           Average Structure
          Length = 63

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 48/58 (82%)

Query: 276 ISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           I+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+ N+  +L++N E A+ IE  +R+
Sbjct: 1   INFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRE 58


>gi|61806057|ref|YP_214417.1| UvsX RecA-like protein [Prochlorococcus phage P-SSM2]
 gi|61374566|gb|AAX44563.1| UvsX RecA-like protein [Prochlorococcus phage P-SSM2]
 gi|265525269|gb|ACY76066.1| recombination and repair protein UvsX [Prochlorococcus phage
           P-SSM2]
          Length = 335

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 149/338 (44%), Gaps = 52/338 (15%)

Query: 1   MDYRKEM--NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIA 58
           MD+ KE+   I D+   + A + + +R    G+         IF G+    SGS+     
Sbjct: 1   MDFLKEIVKEIGDEYTQVAADIQENERFIDTGSY--------IFNGL---VSGSI----- 44

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ--SQKTGGTCAFVDAEHALDSIYARKLG 116
              GG    RI  I G  S+GKT  +L  +         G C + D E A++       G
Sbjct: 45  --FGGVSSSRITAIAGESSTGKTYFSLAVVKNFLDNNPDGYCLYFDTEAAVNKGLLESRG 102

Query: 117 VDLKNLLISQPDTGEQ----ALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEGDMG 168
           +D+  L++    T E+    AL   D+ +++   +    + V+DS+  L+   EI     
Sbjct: 103 IDMNRLVVVNVVTIEEFRSKALRAVDIYLKTSEEERKPCMFVLDSLGMLSTEKEIR---- 158

Query: 169 ESLPGMQARLMSQ------ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           ++L   Q R M++      A R LT  + ++   L+  N     IG    + E   GG+ 
Sbjct: 159 DALDDKQVRDMTKSQLVKGAFRMLTLKLGQANIPLIVTNHTYDVIGSYVPTKEMG-GGSG 217

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE-GISFFGE 281
           LK+ +S  + + +    KD+  + GN  + K  K++++   K+V+  + Y E G+  +  
Sbjct: 218 LKYAASTIIYLSKKKE-KDQKEVIGNLIKAKTHKSRLSKENKEVQIRLYYDERGLDRYYG 276

Query: 282 LIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
           L++LG      +  G W +  G+    G+   KI+ +E
Sbjct: 277 LLELG------EIGGMWKNVAGRYEMNGK---KIYAKE 305


>gi|167427197|ref|ZP_02318950.1| recombinase [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167053802|gb|EDR63638.1| recombinase [Yersinia pestis biovar Mediaevalis str. K1973002]
          Length = 200

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 5/99 (5%)

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           AR  S     L     +    ++F+NQ+R KIGVMFG P T+ GG++ KFY+SVR+   R
Sbjct: 28  ARATSANFPTLALWARKYNACIIFLNQVRTKIGVMFGDPTTSPGGDSPKFYASVRI---R 84

Query: 236 VGS--IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +G+  +KD     G     + +KNK+A PF +  +   +
Sbjct: 85  LGASVMKDGKEKIGQDVGAECIKNKVAPPFGKCSWKFYF 123


>gi|115380281|ref|ZP_01467295.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|310821707|ref|YP_003954065.1| RecA protein [Stigmatella aurantiaca DW4/3-1]
 gi|115362710|gb|EAU61931.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|309394779|gb|ADO72238.1| RecA protein [Stigmatella aurantiaca DW4/3-1]
          Length = 293

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           I QL  Q +    +  + +G   +D  L  GGFP G+ +E+ G  +SG+T+LAL  +A +
Sbjct: 20  IRQL--QAAPRSALATLRTGVEEVDALLPSGGFPLGQALELCGEMASGRTSLALRAVAAA 77

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
            +    CA+VD    L    A  +GVDL  LLI +P    Q       L RSGA   +V+
Sbjct: 78  HQERRLCAWVDGPKELYPPAAAAMGVDLARLLIVRPKLPAQLAWTAVQLARSGAFACVVL 137

Query: 152 D 152
           D
Sbjct: 138 D 138


>gi|327493652|gb|AEA86511.1| RecA [Campylobacter phage NCTC12673]
          Length = 348

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 123/269 (45%), Gaps = 20/269 (7%)

Query: 42  FEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIAQ--SQKTGG 96
           F   E V +    L++AL     GG   G  V I GP    K+  AL  +A    +    
Sbjct: 26  FGKTEFVETPVPMLNLALSGKINGGLTPGLTV-IAGPSKHFKSNYALVMMASYLQKYPDA 84

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQP--DTGEQALEITDML--VRSGAVDIIVID 152
            C F D+E  +   Y    G+D   + I  P  +  E   +I + L  +  G   II++D
Sbjct: 85  VCIFYDSEFGITPNYMENFGIDTTRV-IHTPVMNVEELKFDIANQLENIEDGDRVIIILD 143

Query: 153 SVAALTPRAEIEGDMGE-SLPGMQ-ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           S+  L  +AEIE  + E S+  MQ ++ +    R +T  +S  +  +V +N     IG +
Sbjct: 144 SLGNLASKAEIENAINEKSVVDMQRSKHIKSLFRIVTPYLSMKQIPMVVVNHTYDDIGSL 203

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS---ITGNQTRVKVVKNKMASPFKQVE 267
           +G  +  +GG  +  YS+  + I  +G  ++KDS   + G Q  + V K++      ++ 
Sbjct: 204 WGG-QVVSGGTGV-IYSADTIFI--IGKAQEKDSKKNLQGWQFTINVEKSRFIKEKSKIP 259

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSG 296
             + +  GI+ +  L DLG++   + K G
Sbjct: 260 ILVTFDNGINKWSGLADLGLELGFLQKQG 288


>gi|161622538|ref|YP_001595166.1| UvsX RecA-like recombination protein [Enterobacteria phage JS98]
 gi|160331890|gb|AAU29228.2| UvsX RecA-like recombination protein [Enterobacteria phage JS98]
          Length = 390

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 128/310 (41%), Gaps = 16/310 (5%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           ++  +F G + V +    L+IALG     G   G  +    P    KT   L  +A   K
Sbjct: 21  TKSKLFNGRDEVPTRIPMLNIALGGALNAGLQSGLTI-FAAPSKHFKTLFGLTMVAAYMK 79

Query: 94  --TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ-ALEITDML--VRSGAVDI 148
                 C F D+E      Y R +GVDL+ ++ +   + EQ  +++T+ L  +  G   I
Sbjct: 80  KYPDAICLFYDSEFGASESYFRSMGVDLERVVHTPIQSVEQLKVDMTNQLEEITRGEKVI 139

Query: 149 IVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           I IDS+     + E E  + E + G   +A+ +    R +T  ++      V IN   M+
Sbjct: 140 IFIDSIGNTASKKETEDALNEKVVGDMTRAKSLKSLFRIVTPYLTIKDIPCVAINHTAME 199

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IG M+  P+   GG     YS+  +       +KD   +TG    +K  K++        
Sbjct: 200 IGGMY--PKEIMGGGTGILYSASTVFFISKRQVKDGTELTGYDFTLKAEKSRTVKEKSTF 257

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGA-WF--SFKGQRLGQGRENSKIFLRENIEI 323
              + +  GI  F  L+++      V K  A W+  +F  +  G+  +  K +  +  + 
Sbjct: 258 PITVNFEGGIDPFSGLLEMATDIGFVVKPKAGWYNRAFLDETTGEMVQEEKAWRAKATDC 317

Query: 324 AENIESLLRQ 333
            E    L + 
Sbjct: 318 VEFWGPLFKH 327


>gi|238695193|ref|YP_002922386.1| UvsX RecA-like recombination protein [Enterobacteria phage JS10]
 gi|220029329|gb|ACL78263.1| UvsX RecA-like recombination protein [Enterobacteria phage JS10]
          Length = 390

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 116/275 (42%), Gaps = 14/275 (5%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           ++  +F G + V +    L+IALG     G   G  +    P    KT   L  +A   K
Sbjct: 21  TKSKLFNGRDEVPTRIPMLNIALGGALNAGLQSGLTI-FAAPSKHFKTLFGLTMVAAYMK 79

Query: 94  --TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ-ALEITDML--VRSGAVDI 148
                 C F D+E      Y R +GVDL+ ++ +   + EQ  +++T+ L  +  G   I
Sbjct: 80  KYPDAICLFYDSEFGASESYFRSMGVDLERVVHTPIQSVEQLKVDMTNQLEEITRGEKVI 139

Query: 149 IVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           I IDS+     + E E  + E + G   +A+ +    R +T  ++      V IN   M+
Sbjct: 140 IFIDSIGNTASKKETEDALNEKVVGDMTRAKSLKSLFRIVTPYLTIKDIPCVAINHTAME 199

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IG M+  P+   GG     YS+  +       +KD   +TG    +K  K++        
Sbjct: 200 IGGMY--PKEIMGGGTGILYSASTVFFISKRQVKDGTELTGYDFTLKAEKSRTVKEKSTF 257

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGA-WFS 300
              + +  GI  F  L+++      V K  A W++
Sbjct: 258 PITVNFEGGIDPFSGLLEMATDIGFVVKPKAGWYN 292


>gi|299778994|ref|YP_003734188.1| UvsX RecA-like recombination protein [Enterobacteria phage IME08]
 gi|298105723|gb|ADI55367.1| UvsX RecA-like recombination protein [Enterobacteria phage IME08]
          Length = 394

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 116/275 (42%), Gaps = 14/275 (5%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           ++  +F G + V +    L+IALG     G   G  +    P    KT   L  +A   K
Sbjct: 22  TKSKLFNGRDEVPTRIPMLNIALGGALNAGLQSGLTI-FAAPSKHFKTLFGLTMVAAYMK 80

Query: 94  --TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ-ALEITDML--VRSGAVDI 148
                 C F D+E      Y R +GVDL+ ++ +   + EQ  +++T+ L  +  G   I
Sbjct: 81  KYPDAICLFYDSEFGASESYFRSMGVDLERVVHTPIQSVEQLKVDMTNQLEEITRGEKVI 140

Query: 149 IVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           I IDS+     + E E  + E + G   +A+ +    R +T  ++      V IN   M+
Sbjct: 141 IFIDSIGNTASKKETEDALNEKVVGDMTRAKSLKSLFRIVTPYLTIKDIPCVAINHTAME 200

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IG M+  P+   GG     YS+  +       +KD   +TG    +K  K++        
Sbjct: 201 IGGMY--PKEIMGGGTGILYSASTVFFISKRQVKDGTELTGYDFTLKAEKSRTVKEKSTF 258

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGA-WFS 300
              + +  GI  F  L+++      V K  A W++
Sbjct: 259 PITVNFEGGIDPFSGLLEMATDIGFVVKPKAGWYN 293


>gi|325957924|ref|YP_004289390.1| DNA repair and recombination protein radA [Methanobacterium sp.
           AL-21]
 gi|325329356|gb|ADZ08418.1| DNA repair and recombination protein radA [Methanobacterium sp.
           AL-21]
          Length = 311

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 108/208 (51%), Gaps = 27/208 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           V++GS GLD  +G GG     I E++G   SGK+ ++ H +A + +        GG C F
Sbjct: 79  VTTGSTGLDELIG-GGIETQSITEVFGEFGSGKSQIS-HELAVTVQLPPEKGGLGGQCVF 136

Query: 101 VDAEHALDSIYARKLG----VD----LKNLLISQPDTGEQALEITDM---LVRSGA-VDI 148
           +D E+       +++     +D    L N+ I++       + + D    L++SGA + +
Sbjct: 137 IDTENTFRPERIKQIAEGFELDVEEVLTNIHIARAFNSSHQILMADKVNELIQSGANIKL 196

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMKI 207
           +++DS+ A   RAE  G   ESL   Q +L +Q L  L S+I+ +  + VF+ NQ++ K 
Sbjct: 197 VIVDSLTAHF-RAEYVGR--ESLATRQQKL-NQHLHTL-SNIANTYNVAVFVTNQVQSKP 251

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
              FGSP    GG+ L   ++ R+ +++
Sbjct: 252 DAFFGSPTKAIGGHVLGHAATYRIWLKK 279


>gi|282599230|ref|YP_003358542.1| UvsX RecA-like recombination protein [Shigella phage phiSboM-AG3]
 gi|226973536|gb|ACO94289.1| UvsX RecA-like recombination protein [Shigella phage phiSboM-AG3]
          Length = 361

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 144/339 (42%), Gaps = 28/339 (8%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIA--QS 91
           SQ    E   + S+G   +DIA      GG   G I  + G   + KT   L  +     
Sbjct: 24  SQSDALEPSIICSTGIPLIDIAWSGRIDGGLISG-IKMMVGDSRTFKTMFGLVDVKAYMD 82

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA-LEITDML--VRSGAVDI 148
           +     C F D+E   ++ Y   +G+D+  +L    D  EQ  + +  +L  V+ G   I
Sbjct: 83  KFPDALCIFADSEKGANADYWTSMGIDMDRVLYVPIDNVEQTKIRLLQILQEVKKGDHVI 142

Query: 149 IVIDSVAALTPRAEIEGDM-GESLPGM-QARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           I IDS++ L    E+E  + G     M +AR ++   R +T  I+    +LV+IN    +
Sbjct: 143 IFIDSISQLPSTKEVEDAIKGNDTQDMTRARALNSFWRVITPEINSKDLVLVWINSYYDE 202

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IG  +  P    G     F SS  +       +K+   + G    + ++K +      ++
Sbjct: 203 IGNQYAEPNIKGGKQG--FLSSNLIWFITRSQVKEDKDLLGWNFNIGIMKGRHVKEKAKL 260

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVD-KSGAW--------FSFKGQRLGQGRENSKIF- 316
              ++Y  GI  +  L+++      VD  S  W        F  + ++  Q R+    F 
Sbjct: 261 PVTVLYDGGIDRWSGLLEIARALGYVDMPSSGWYVRTAKGGFDPEKEKKYQKRQMDDDFW 320

Query: 317 --LRENIEIAENIESLLRQNAGLV--ADSLLQ-EPAINT 350
             L EN++ A++++ +   + G V  A+ L Q +  INT
Sbjct: 321 YPLLENVDFADDVKKMFGVSNGTVMPANMLEQMDHVINT 359


>gi|326782556|ref|YP_004323072.1| UvsX RecA-like protein [Synechococcus phage S-SM1]
 gi|310002770|gb|ADO97169.1| UvsX RecA-like protein [Synechococcus phage S-SM1]
          Length = 336

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 107/254 (42%), Gaps = 28/254 (11%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQ---SQKTGGTCAFVDAEHALDSIYARKLGVD 118
           GG P  +I  I G  S+GKT   L  +     S    G   F ++E A+        G+D
Sbjct: 49  GGVPSNKITAIAGESSTGKTFFCLGIVQHFLDSNPDAGVIYF-ESESAISKQMIEDRGID 107

Query: 119 LKNLLISQPDTGEQ----ALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEG----- 165
              ++I    T EQ    +  I D  +   A D    + V+DS+  L+   EI       
Sbjct: 108 SSRMMIVPVATIEQFRTQSCRILDKYMEQDAADRKPLMFVLDSLGMLSTEKEIADVAADK 167

Query: 166 ---DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
              DM +S      +L+  A R LT  + ++   ++  N     IG    + E   GG+ 
Sbjct: 168 QVRDMTKS------QLIKGAFRVLTLKLGKANVPMLVTNHTYDVIGAYMPTKEMG-GGSG 220

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LK+ SS  + + +    KD   + GN  + K  K+++     QVE  + Y  G+  +  L
Sbjct: 221 LKYASSTIIYLSKKKE-KDGTEVVGNIIKCKAHKSRLTKENSQVETRLYYDRGLDRYYGL 279

Query: 283 IDLGVKASIVDKSG 296
           ++LG K  I  K G
Sbjct: 280 LELGEKYGIFTKRG 293


>gi|213423183|ref|ZP_03356196.1| hypothetical protein Salmonentericaenterica_37422 [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 38

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/38 (78%), Positives = 35/38 (92%)

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G
Sbjct: 1   EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIG 38


>gi|254551791|ref|ZP_05142238.1| DNA recombination protein RecA [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
          Length = 75

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 44/57 (77%)

Query: 283 IDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           ID+GV   ++ KSGAWF+++G++LGQG+EN++ FL EN ++A+ IE  +++  G+ A
Sbjct: 1   IDMGVDQGLIRKSGAWFTYEGEQLGQGKENARNFLVENADVADEIEKKIKEKLGIGA 57


>gi|207111930|ref|ZP_03246092.1| recA protein [Helicobacter pylori HPKX_438_CA4C1]
          Length = 35

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/35 (80%), Positives = 33/35 (94%)

Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
          LDIALG+GG PKGR++E+YGPESSGKTT+ALH IA
Sbjct: 1  LDIALGLGGVPKGRVIEVYGPESSGKTTVALHMIA 35


>gi|326783847|ref|YP_004324241.1| UvsX RecA-like protein [Synechococcus phage S-SSM7]
 gi|310003859|gb|ADO98254.1| UvsX RecA-like protein [Synechococcus phage S-SSM7]
          Length = 333

 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 116/260 (44%), Gaps = 27/260 (10%)

Query: 34  QLGSQGSIFEGIEVVSSGSL---GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           QL S+    E  E V +GS    GL      GG  + +I  I G  S+GKT  +L  +  
Sbjct: 17  QLASEAESTE--EYVDTGSYIFNGLVSGSIFGGVSRNKITAIAGESSTGKTFFSLAVVKN 74

Query: 91  --SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ----ALEITDMLVRSG 144
                  G C + D E A++       G+DL+ L++    T E+    AL   D+ +++ 
Sbjct: 75  FLDSNPDGYCLYFDTEAAVNRGLLESRGIDLERLVVVNVVTIEEFRSKALRAVDIYLKTE 134

Query: 145 AVD----IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ------ALRKLTSSISRSK 194
             +    + V+DS+  L+   EI     ++L   Q R M++      A R LT  + ++ 
Sbjct: 135 EGNRKPCMFVLDSLGMLSTEKEIR----DALDDKQVRDMTKSQLVKGAFRMLTLKLGQAN 190

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
             L+  N     IG    + E   GG+ LK+ +S  + + +    K+   + GN  + K 
Sbjct: 191 IPLIVTNHTYDVIGSYVPTKEMG-GGSGLKYAASTIIYLSKAKE-KEGTEVVGNIIKAKT 248

Query: 255 VKNKMASPFKQVEFDIMYGE 274
            K++++   K+V+  + Y E
Sbjct: 249 AKSRLSKENKEVKIRLYYDE 268


>gi|167423031|ref|ZP_02314784.1| recombinase [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167427214|ref|ZP_02318967.1| recombinase [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|166957055|gb|EDR55076.1| recombinase [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167053780|gb|EDR63621.1| recombinase [Yersinia pestis biovar Mediaevalis str. K1973002]
          Length = 133

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 4/85 (4%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV---- 117
           GGFP GRIVE++GP S+GKT LA   +  +QK  G   F+D E++ D   A   G+    
Sbjct: 46  GGFPCGRIVEVFGPPSAGKTFLATAAMVSAQKQDGLAVFLDHENSFDVGLAVANGLNADE 105

Query: 118 DLKNLLISQPDTGEQALEITDMLVR 142
           D    +  QPDT E ++E+   +++
Sbjct: 106 DDGQWVYKQPDTFEDSVELIGTILK 130


>gi|9998939|ref|NP_049656.2| UvsX RecA-like recombination protein [Enterobacteria phage T4]
 gi|14917058|sp|P04529|UVSX_BPT4 RecName: Full=Recombination and repair protein
 gi|9313020|gb|AAD42669.2|AF158101_256 UvsX RecA-like recombination protein [Enterobacteria phage T4]
 gi|299780396|gb|ADJ39758.1| RecA-like recombination protein [Enterobacteria phage T4T]
          Length = 391

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 116/273 (42%), Gaps = 19/273 (6%)

Query: 41  IFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIAQ--SQKTG 95
            F   +VV +    ++IAL     GG   G ++ + GP  S K+   L  ++    Q   
Sbjct: 25  FFNEKDVVRTKIPMMNIALSGEITGGMQSGLLI-LAGPSKSFKSNFGLTMVSSYMRQYPD 83

Query: 96  GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD-----IIV 150
             C F D+E  +   Y R +GVD + + I  P    + L I DM+ +  A++     ++ 
Sbjct: 84  AVCLFYDSEFGITPAYLRSMGVDPERV-IHTPVQSLEQLRI-DMVNQLDAIERGEKVVVF 141

Query: 151 IDSVAALTPRAEIEGDMGESLPG--MQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IDS+  L  + E E  + E +     +A+ M    R +T   S      + IN    +  
Sbjct: 142 IDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT-YETQ 200

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
            MF   +T  GG     YS+  + I     IKD   + G Q  + V K++      +   
Sbjct: 201 EMFS--KTVMGGGTGPMYSADTVFIIGKRQIKDGSDLQGYQFVLNVEKSRTVKEKSKFFI 258

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKS-GAWFS 300
           D+ +  GI  +  L+D+ ++   V K    W++
Sbjct: 259 DVKFDGGIDPYSGLLDMALELGFVVKPKNGWYA 291


>gi|215965|gb|AAA32552.1| recombination and repair protein (uvsX) [Enterobacteria phage T4]
 gi|4584821|emb|CAB40822.1| unnamed protein product [Enterobacteria phage T4]
          Length = 390

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 116/273 (42%), Gaps = 19/273 (6%)

Query: 41  IFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIAQ--SQKTG 95
            F   +VV +    ++IAL     GG   G ++ + GP  S K+   L  ++    Q   
Sbjct: 25  FFNEKDVVRTKIPMMNIALSGEITGGMQSGLLI-LAGPSKSFKSNFGLTMVSSYMRQYPD 83

Query: 96  GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD-----IIV 150
             C F D+E  +   Y R +GVD + + I  P    + L I DM+ +  A++     ++ 
Sbjct: 84  AVCLFYDSEFGITPAYLRSMGVDPERV-IHTPVQSLEQLRI-DMVNQLDAIERGEKVVVF 141

Query: 151 IDSVAALTPRAEIEGDMGESLPG--MQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IDS+  L  + E E  + E +     +A+ M    R +T   S      + IN    +  
Sbjct: 142 IDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT-YETQ 200

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
            MF   +T  GG     YS+  + I     IKD   + G Q  + V K++      +   
Sbjct: 201 EMFS--KTVMGGGTGPMYSADTVFIIGKRQIKDGSDLQGYQFVLNVEKSRTVKEKSKFFI 258

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKS-GAWFS 300
           D+ +  GI  +  L+D+ ++   V K    W++
Sbjct: 259 DVKFDGGIDPYSGLLDMALELGFVVKPKNGWYA 291


>gi|284165434|ref|YP_003403713.1| DNA repair and recombination protein RadB [Haloterrigena turkmenica
           DSM 5511]
 gi|284015089|gb|ADB61040.1| DNA repair and recombination protein RadB [Haloterrigena turkmenica
           DSM 5511]
          Length = 235

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 102/239 (42%), Gaps = 35/239 (14%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + +G   +D  LG GGF +G + ++YGP ++GKT LAL    ++   GGT  +VD E 
Sbjct: 4   EAIPTGCGPVDELLG-GGFERGTVTQVYGPPAAGKTNLALSAAVETAVAGGTAVYVDTEG 62

Query: 106 ALDSIYARKLGVDLKN----------LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
                + + L   + +          ++    D  EQ+  + D    +   D+IV+DS  
Sbjct: 63  VSVDRFQQLLSARVDDEDVEAVASRIVIEDAVDFEEQSEAVRDTEEFAERADLIVLDSAT 122

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
               R E     GES  G   R +++ +  L S   +    +V  NQ       +F  P+
Sbjct: 123 GFY-RLE---RTGESDGGEALRSVARQVTHLLSLARKHDLAVVLTNQ-------VFADPD 171

Query: 216 T----TTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
                  GGN L+ ++ V L + R           G   R  + K++  +  + V+F I
Sbjct: 172 ADRTRALGGNTLEHWTGVVLRLER---------FRGGNRRATLEKHRSKAVGESVQFRI 221


>gi|112982765|ref|NP_001037552.1| Dmc1 homolog [Bombyx mori]
 gi|2058711|gb|AAB53331.1| Dmc1 homolog [Bombyx mori]
          Length = 341

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 99/212 (46%), Gaps = 31/212 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           +S+GS  LD  L  GG     I E++G   +GKT L+ HT+  + +        GG   F
Sbjct: 102 ISTGSTELDKLLA-GGIESMAITEVFGEFRTGKTQLS-HTLCVTTQIPNSKGYQGGKVMF 159

Query: 101 VDAEHAL--DSI--YARKLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147
           +D EH    D +   A +  +D    L N+L ++  T E   E+ D +       +G   
Sbjct: 160 LDTEHTFRPDRLRPIADRFNLDQNAVLDNVLYARAYTSEHQAELLDYVAAKFHEEAGVFK 219

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206
           +++IDS+ AL  R +  G  GE L   Q +L +Q L +L   IS    + VFI NQM   
Sbjct: 220 LLIIDSIMALF-RVDFSG-RGE-LADRQQKL-AQVLSRL-QKISEEYNVAVFITNQMTAD 274

Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIRR 235
            G        P+   GGN L   S+ R+ +R+
Sbjct: 275 PGATLTFQADPKKPIGGNILAHASTTRISLRK 306


>gi|304445772|pdb|3IO5|A Chain A, Crystal Structure Of A Dimeric Form Of The Uvsx
           Recombinase Core Domain From Enterobacteria Phage T4
 gi|304445773|pdb|3IO5|B Chain B, Crystal Structure Of A Dimeric Form Of The Uvsx
           Recombinase Core Domain From Enterobacteria Phage T4
          Length = 333

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 116/269 (43%), Gaps = 19/269 (7%)

Query: 45  IEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIAQ--SQKTGGTCA 99
           ++VV +    ++IAL     GG   G ++ + GP  S K+   L  ++    Q     C 
Sbjct: 4   MDVVRTKIPMMNIALSGEITGGMQSGLLI-LAGPSKSFKSNFGLTMVSSYMRQYPDAVCL 62

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD-----IIVIDSV 154
           F D+E  +   Y R +GVD + + I  P    + L I DM+ +  A++     ++ IDS+
Sbjct: 63  FYDSEFGITPAYLRSMGVDPERV-IHTPVQSLEQLRI-DMVNQLDAIERGEKVVVFIDSL 120

Query: 155 AALTPRAEIEGDMGESLPG--MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
             L  + E E  + E +     +A+ M    R +T   S      + IN    +   MF 
Sbjct: 121 GNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT-YETQEMFS 179

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
             +T  GG     YS+  + I     IKD   + G Q  + V K++      +   D+ +
Sbjct: 180 --KTVMGGGTGPMYSADTVFIIGKRQIKDGSDLQGYQFVLNVEKSRTVKEKSKFFIDVKF 237

Query: 273 GEGISFFGELIDLGVKASIVDKS-GAWFS 300
             GI  +  L+D+ ++   V K    W++
Sbjct: 238 DGGIDPYSGLLDMALELGFVVKPKNGWYA 266


>gi|61806349|ref|YP_214708.1| UvsX RecA-like protein [Prochlorococcus phage P-SSM4]
 gi|61563893|gb|AAX46948.1| UvsX RecA-like protein [Prochlorococcus phage P-SSM4]
          Length = 336

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 114/262 (43%), Gaps = 31/262 (11%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIA---QSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           GG P  +I  I G  S+GKT   L  +    +S    G   F ++E A+        G+D
Sbjct: 49  GGIPNNKITAIAGETSTGKTFFCLGMVQHFLESNPDAGVIYF-ESESAISKQMIEDRGID 107

Query: 119 LKNLLISQPDTGE----QALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEGDMGES 170
              +L+    T +    QA++I D      A +    + V+DS+  L+   E+E    +S
Sbjct: 108 SNRMLLVPVTTVQEFRLQAIKILDKYNEQTAEERKPLMFVLDSLGMLSTSKEVE----DS 163

Query: 171 LPGMQARLMSQA------LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
             G + R M++A       R LT  + ++   L+  N     +G    + E   GG+ LK
Sbjct: 164 EAGKETRDMTRAQVVKSIFRVLTLKLGKANVPLIVTNHTYDVVGAYIPTKEMG-GGSGLK 222

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           + +S  + + +    K+   + GN  + K  K+++      VE  + Y  G+  +  L++
Sbjct: 223 YAASTIVYLSKKKE-KNGKEVVGNIIKCKTAKSRLTKENSDVETRLYYDRGLDRYYGLLE 281

Query: 285 LGVKASIVDKSGAWFSFKGQRL 306
           LG K  +       FS KG R+
Sbjct: 282 LGEKHGV-------FSRKGNRV 296


>gi|257387834|ref|YP_003177607.1| DNA repair and recombination protein RadB [Halomicrobium mukohataei
           DSM 12286]
 gi|257170141|gb|ACV47900.1| DNA repair and recombination protein RadB [Halomicrobium mukohataei
           DSM 12286]
          Length = 235

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 102/241 (42%), Gaps = 38/241 (15%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE- 104
           E VS+G   +D  LG GGF +G + +IYGP ++GKT LAL    +    G +  ++D E 
Sbjct: 3   EYVSTGCAEIDDLLG-GGFERGAVTQIYGPPAAGKTNLALSGAVEVAAAGDSALYIDTEG 61

Query: 105 ----------HALDSIYARKLGVDLKNLLISQP-DTGEQALEITDMLVRSGAVDIIVIDS 153
                      A  S     L    + +++S+  D  +Q + + D    +  V++IV+DS
Sbjct: 62  LSADRMEQIAGARASETDETLAALAERIVVSEALDFEDQEVAVQDAAELASQVELIVLDS 121

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
                     +GD GE+L     R +++ +  L S   +    +   NQ       +F  
Sbjct: 122 ATGFYRLERDDGDGGEAL-----RDVARQITHLLSLARKHDLAVAVTNQ-------VFAD 169

Query: 214 PET----TTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           P++      GG+ L  +S         G+I   D   G   R  + K++  +     +F 
Sbjct: 170 PDSDGTRALGGHTLNHWS---------GAILRLDRFRGGNRRATLEKHRAKAAGDTAQFR 220

Query: 270 I 270
           I
Sbjct: 221 I 221


>gi|226228137|ref|YP_002762243.1| RecA protein homolog [Gemmatimonas aurantiaca T-27]
 gi|226091328|dbj|BAH39773.1| RecA protein homolog [Gemmatimonas aurantiaca T-27]
          Length = 353

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 4/109 (3%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   LD ALG GG P+GRI E+ GP + GK+ L    I Q   TG   A++DA   L  
Sbjct: 29  TGVPALDRALG-GGIPRGRITELVGPLAVGKSGLLRQVITQVLATGSWAAWIDATRTLAP 87

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
                +G  L  + +  P    +A    D+L+RSG   ++VID   +L+
Sbjct: 88  EPWTGMGARLVVVRLPTP---HRAAWTADLLLRSGVFGLVVIDGAPSLS 133


>gi|18202886|sp|Q9F414|RECA_MYCGS RecName: Full=Protein RecA; AltName: Full=Recombinase A; Contains:
           RecName: Full=Mga RecA intein
 gi|10241734|emb|CAC09591.1| RecA protein [Mycobacterium gastri]
          Length = 419

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/48 (58%), Positives = 38/48 (79%), Gaps = 1/48 (2%)

Query: 208 GVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           GVM   SPETTTGG ALKFY+SVR+D++R+ ++KD  +   N+TRVK+
Sbjct: 372 GVMVHNSPETTTGGKALKFYASVRMDVQRIETLKDGTNTVDNRTRVKI 419


>gi|32453528|ref|NP_861734.1| UvsX RecA-like recombination protein [Enterobacteria phage RB69]
 gi|32350347|gb|AAP75946.1| UvsX RecA-like recombination protein [Enterobacteria phage RB69]
          Length = 390

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 115/275 (41%), Gaps = 14/275 (5%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           ++  +F   + V +    L+IALG     G   G  +    P    KT   L  +A   K
Sbjct: 21  TKSKLFNNRDEVPTRIPMLNIALGGALNAGLQSGLTI-FAAPSKHFKTLFGLTMVAAYMK 79

Query: 94  T--GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ-ALEITDML--VRSGAVDI 148
                 C F D+E      Y R +GVDL  ++ +   + EQ  +++T+ L  +  G   I
Sbjct: 80  KYKDAICLFYDSEFGASESYFRSMGVDLDRVVHTPIQSVEQLKVDMTNQLDAIERGDKVI 139

Query: 149 IVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           I IDS+     + E E  + E + G   +A+ +    R +T  ++      V IN   M+
Sbjct: 140 IFIDSIGNTASKKETEDALNEKVVGDMSRAKALKSLFRIVTPYLTIKDIPCVAINHTAME 199

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IG ++  P+   GG     YS+  +       +K+   +TG    +K  K++        
Sbjct: 200 IGGLY--PKEIMGGGTGILYSANTVFFISKRQVKEGTELTGYDFTLKAEKSRTVKEKSTF 257

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGA-WFS 300
              + +  GI  F  L+++  +   V K  A W++
Sbjct: 258 PITVNFDGGIDPFSGLLEMATEIGFVVKPKAGWYA 292


>gi|76801543|ref|YP_326551.1| DNA repair and recombination protein RadB [Natronomonas pharaonis
           DSM 2160]
 gi|76557408|emb|CAI48985.1| DNA repair and recombination protein [Natronomonas pharaonis DSM
           2160]
          Length = 231

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 89/204 (43%), Gaps = 27/204 (13%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + +G   +D  LG GGF +G + ++YGP +SGKT LAL    Q    GGT  ++D E 
Sbjct: 3   EPIPTGCDTVDTLLG-GGFERGTVTQLYGPPASGKTNLALSAAVQVAADGGTALYIDTEG 61

Query: 106 -ALDSI--YARKLGVDLK----NLLISQP-DTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            +LD     AR    DL+     ++IS   D  +Q   + D    +   D++V+DS    
Sbjct: 62  VSLDRFEQLARGATDDLEGTTSRVIISDALDFDDQREAVQDAGDLAATADLVVLDSATGF 121

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
                   D GE+L     R ++  +  L     R    +V  NQ       ++  PE  
Sbjct: 122 YRLERDTDDDGETL-----REVATQVTHLLGLARRHDLAVVITNQ-------VYTDPEAD 169

Query: 218 T------GGNALKFYSSVRLDIRR 235
           +      GG+ L  +S   L I R
Sbjct: 170 SSRVRPLGGHTLSHWSGTVLRIER 193


>gi|145352283|ref|XP_001420481.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580715|gb|ABO98774.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 358

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 104/213 (48%), Gaps = 35/213 (16%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK----TGGTC---AF 100
           ++SG+  +D  LG GGF    I EIYG    GKT L  HTIA + +     GG C   A+
Sbjct: 122 ITSGAAAVDAILG-GGFESRAITEIYGEWRCGKTQLC-HTIAVTTQMPVEMGGGCAKVAW 179

Query: 101 VDAEHAL--DSIY--ARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGA------V 146
           +D E+    D +   A + G+D    L N+++++ DT +Q +     L+  GA       
Sbjct: 180 IDTENTFRGDRLVQIANRFGLDADAVLSNVMVARVDTVDQMMH---ALIAIGAKMAEEPF 236

Query: 147 DIIVIDSVAALTPRAEI-EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
            ++V+DS+ A+     +  G++ E     + + ++Q L +L          +V  NQ++ 
Sbjct: 237 KLLVVDSIMAIFRVDYVARGELSE-----RQQTLNQFLSRLRKIAEEFNVAVVLTNQVQS 291

Query: 206 KIGVM-FG--SPETTTGGNALKFYSSVRLDIRR 235
             G M F    P+   GG+ L   S++RL +R+
Sbjct: 292 DPGGMAFAGVEPKKAIGGHVLAHASTIRLMVRK 324


>gi|331035530|gb|AEC53087.1| UvsX [Synechococcus phage S-CRM01]
          Length = 337

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 113/259 (43%), Gaps = 15/259 (5%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT--GGTCAFVDAEHALDSIYARKLGVD 118
            GG    +I  I G  S+GKT  AL  +     T   G+  + D E A+         +D
Sbjct: 45  FGGVSGNKITAIAGESSTGKTFFALAVVQNFLDTHPNGSIVYFDTESAITKSLLEDRNID 104

Query: 119 LKNLLISQPDTGEQ----ALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEG--DMG 168
              + I    T E+    AL+  D+  +    +    + V+DS+  L+   E+    D  
Sbjct: 105 TSRVAIVNVATIEEFRNIALKACDIHTKKPESERTPLLFVLDSLGMLSTTKEVTDILDDK 164

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +     +A+L   A R LT ++ ++   ++  N     IG    + E   GG+ LK+ +S
Sbjct: 165 QVRDMTKAQLTKGAFRVLTLALGKANIPMIVTNHTYDVIGSYVPTKEMG-GGSGLKYAAS 223

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE-GISFFGELIDLGV 287
             + + +    KD   + GN  + K  K++++   ++V   + Y E G+  +  L+DL +
Sbjct: 224 TIIYLSKKKE-KDGTEVIGNLIKAKTAKSRLSKENQEVTIRLFYDERGLDKYYGLVDLAI 282

Query: 288 KASIVDKSGAWFSFKGQRL 306
           +A I  K+       G+++
Sbjct: 283 EAGIWTKTAGRIEVNGKKI 301


>gi|224095169|ref|XP_002195715.1| PREDICTED: DMC1 dosage suppressor of mck1 homolog, meiosis-specific
           homologous recombination (yeast) [Taeniopygia guttata]
          Length = 342

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 104/232 (44%), Gaps = 37/232 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           VS+GS   D  LG GG     I E +G   +GKT L+ HT+  + +       TGG   F
Sbjct: 103 VSTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGPNGYTGGKIIF 160

Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147
           +D E+       R    +  VD    L N+L ++  T E  +E+ D +       +G   
Sbjct: 161 IDTENTFRPDRLRDIADRFNVDHEAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 220

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206
           +++IDS+ AL  R +  G  GE L   Q +L +Q L +L   IS    + VF+ NQM   
Sbjct: 221 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 275

Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249
            G        P+   GG+ L   S+ R+ +R      R+  I D   +  N+
Sbjct: 276 PGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 327


>gi|113200682|ref|YP_717845.1| RecA-like recombination protein [Synechococcus phage syn9]
 gi|76574581|gb|ABA47146.1| RecA-like recombination protein [Synechococcus phage syn9]
          Length = 336

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 105/254 (41%), Gaps = 28/254 (11%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLAL---HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           GG P  +I  I G  S+GKT   L       +S    G   F ++E A+        G+ 
Sbjct: 49  GGVPGNKITAIAGESSTGKTFFCLGIVQHFLESNPDAGVIYF-ESESAISKQMIEDRGIP 107

Query: 119 LKNLLISQPDTGE----QALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEG----- 165
              ++I    T E    Q+  I D  +     D    + V+DS+  L    E+E      
Sbjct: 108 SDRMMIVPVSTIEEFRTQSCRILDKYMEQPKEDRQPMMFVLDSLGMLASNKEVEDVANDK 167

Query: 166 ---DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
              DM +S      +L+  A R LT  + ++   ++  N     IG    + E   GG+ 
Sbjct: 168 QVRDMTKS------QLIKGAFRVLTLKLGKANVPMLVTNHTYDVIGAYMPTKEMG-GGSG 220

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LK+ SS  + + +    KD   + GN  + K  K+++     QVE  + Y  G+  +  L
Sbjct: 221 LKYASSTIIYLSKKKE-KDGTEVVGNIIKCKAQKSRLTKENSQVETRLYYDRGLDRYYGL 279

Query: 283 IDLGVKASIVDKSG 296
           ++LG K  +  K G
Sbjct: 280 LELGEKYGVFTKRG 293


>gi|242002736|ref|XP_002436011.1| meiotic recombination protein Dmc1, putative [Ixodes scapularis]
 gi|215499347|gb|EEC08841.1| meiotic recombination protein Dmc1, putative [Ixodes scapularis]
          Length = 341

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 116/252 (46%), Gaps = 45/252 (17%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEV---------VSSGSLGLDIALGIGGFPKG 67
           EA + +I+ V  K     +   G     +EV         VS+GS  LD  +G GG    
Sbjct: 67  EAKVDKIKEVVAK-----IADGGGFLTALEVCEKRRHVFRVSTGSKELDKLMG-GGVESM 120

Query: 68  RIVEIYGPESSGKTTLALHTIA-------QSQKTGGTCAFVDAEHAL--DSI--YARKLG 116
            I E++G   +GKT L+ HT+        ++  +GG   F+D E+    D +   A +  
Sbjct: 121 AITEVFGEFRTGKTQLS-HTLCVTCQLPGENGYSGGKAMFIDTENTFRPDRLRDIADRFN 179

Query: 117 VD----LKNLLISQPDTGEQALEITDMLV-----RSGAVDIIVIDSVAALTPRAEIEGDM 167
           +D    L+N+L ++  T E  +E+ D +       +G   ++++DS+ AL  R +  G  
Sbjct: 180 LDHAAMLENILYARAFTSEHQMEMLDQVAAKFHEEAGVYRLLIVDSIMALF-RVDFSG-R 237

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMKIGVMF---GSPETTTGGNAL 223
           GE L   Q +L +Q L KL   IS    + VFI NQM    G        P+   GG+ L
Sbjct: 238 GE-LADRQQKL-AQMLSKL-QKISEEYNVAVFITNQMTADPGAAMSFQADPKKPIGGHIL 294

Query: 224 KFYSSVRLDIRR 235
              S+ R+ +R+
Sbjct: 295 AHASTTRIALRK 306


>gi|13878702|sp|Q9Y8J4|RADA_DESAM RecName: Full=DNA repair and recombination protein radA
 gi|4929344|gb|AAD33955.1|AF145465_1 recombination/repair protein RadA [Desulfurococcus amylolyticus]
          Length = 328

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 86/205 (41%), Gaps = 22/205 (10%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           +++GS  LD  LG GG     I E +G   SGKT +        Q T       G   ++
Sbjct: 93  ITTGSKSLDELLG-GGVETKTITEFFGEYGSGKTQICHQLSVNVQLTPEKGGLNGRAVYI 151

Query: 102 DAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVDIIV 150
           D E           AR LG+D    + N+   +    +  + I D L   V    V +++
Sbjct: 152 DTEGTFRWERIEAMARALGLDPDKVMDNIYYMRAYNSDHQIAIVDELFTFVPKNDVRLVI 211

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSV +   RAE  G   E L   Q +L S  L +L          +V  NQ+  +  V 
Sbjct: 212 LDSVTSHF-RAEYPGR--EHLAERQQKLNSH-LHQLMRLAEAYNVAVVVTNQVMARPDVF 267

Query: 211 FGSPETTTGGNALKFYSSVRLDIRR 235
           +G P T  GG+ L     VR+ +R+
Sbjct: 268 YGDPTTAVGGHVLAHTPGVRIQLRK 292


>gi|63852080|dbj|BAD98459.1| RecA homolog DMC1 [Anguilla japonica]
 gi|90403222|dbj|BAE92010.1| Dmc1 [Anguilla japonica]
          Length = 339

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 111/243 (45%), Gaps = 37/243 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           +++GSL  D  +G GG     I E +G   +GKT L+ HT+  + +       TGG   F
Sbjct: 100 ITTGSLEFDKLIG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGEDGYTGGKVIF 157

Query: 101 VDAEHAL--DSI--YARKLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147
           +D E+    D +   A +  VD    L N+L ++  T E  +E+ D +        G   
Sbjct: 158 IDTENTFRPDRLKDIADRFSVDQEAVLDNVLYARAYTSEHQMELLDFVAAKFHEEGGVFK 217

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206
           +++IDS+ AL  R +  G  GE L   Q +L +Q L +L   IS    + VF+ NQM   
Sbjct: 218 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 272

Query: 207 --IGVMF-GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKN 257
              G+ F   P+   GG+ L   S+ R+ +R      R+  I D   +  N+    +   
Sbjct: 273 PGAGMTFQADPKKPIGGHILAHASTTRISLRKGRGEMRIAKIFDSPDMPENEATFAITAG 332

Query: 258 KMA 260
            +A
Sbjct: 333 GIA 335


>gi|218884526|ref|YP_002428908.1| DNA repair and recombination protein RadA [Desulfurococcus
           kamchatkensis 1221n]
 gi|254764424|sp|B8D610|RADA_DESK1 RecName: Full=DNA repair and recombination protein radA
 gi|218766142|gb|ACL11541.1| DNA repair and recombination protein radA [Desulfurococcus
           kamchatkensis 1221n]
          Length = 328

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 86/205 (41%), Gaps = 22/205 (10%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           +++GS  LD  LG GG     I E +G   SGKT +        Q T       G   ++
Sbjct: 93  ITTGSKSLDELLG-GGVETKTITEFFGEYGSGKTQICHQLSVNVQLTPEKGGLNGRAVYI 151

Query: 102 DAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVDIIV 150
           D E           AR LG+D    + N+   +    +  + I D L   V    V +++
Sbjct: 152 DTEGTFRWERIEAMARALGLDPDKVMDNIYYMRAYNSDHQIAIVDELFTFVPKNDVRLVI 211

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSV +   RAE  G   E L   Q +L S  L +L          +V  NQ+  +  V 
Sbjct: 212 LDSVTSHF-RAEYPGR--EHLAERQQKLNSH-LHQLMRLAEAYNVAVVVTNQVMARPDVF 267

Query: 211 FGSPETTTGGNALKFYSSVRLDIRR 235
           +G P T  GG+ L     VR+ +R+
Sbjct: 268 YGDPTTAVGGHVLAHTPGVRIQLRK 292


>gi|313231030|emb|CBY19028.1| unnamed protein product [Oikopleura dioica]
          Length = 334

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 114/244 (46%), Gaps = 36/244 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK------TGGTCAFV 101
           + +GS  LD  LG GG     I E++G   +GKT LA HT+  + +      +GG  A++
Sbjct: 96  IPTGSSELDRVLG-GGIESMAITEVFGEFRTGKTQLA-HTLCVTTQMPGIGHSGGKVAYI 153

Query: 102 DAEHA-----LDSIYAR-KLGVD--LKNLLISQPDTGEQALEITDMLV-----RSGAVDI 148
           D E+      L  I AR  L  D  L+N++ ++  T E  +E+ D++        G   I
Sbjct: 154 DTENTFRPDRLRPIAARFNLDADAILQNVVYARAFTSEHQMELLDLVAAQFYSEPGVFKI 213

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK- 206
           ++IDS+  L  R +  G  GE L   Q +L +Q L K+   IS    ++V+I NQM    
Sbjct: 214 LIIDSIIGLF-RVDYSG-RGE-LSERQQKL-AQMLSKV-QKISEEYNVVVYITNQMTADP 268

Query: 207 -IGVMFG-SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
             G+ F   P+   GGN L   S  R+ +R      RV  I D   +  ++    + +  
Sbjct: 269 GAGMTFQIDPKKPVGGNILAHASQTRIMLRKGRGELRVAKIYDSPDMPESEATFAITEAG 328

Query: 259 MASP 262
           +  P
Sbjct: 329 INDP 332


>gi|10944306|dbj|BAB16892.1| DMC1 [Cynops pyrrhogaster]
          Length = 342

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 106/232 (45%), Gaps = 37/232 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           +++GS   D  LG GG     I E +G   +GKT L+ HT+  + +       TGG   F
Sbjct: 103 ITTGSQEFDKLLG-GGIESMAITETFGEFRTGKTQLS-HTLCVTAQLPGTDGYTGGKVIF 160

Query: 101 VDAEHAL--DSI--YARKLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147
           +D E+    D +   A +  VD    L N+L ++  T E  +E+ D +       +G   
Sbjct: 161 IDTENTFRPDRLRDIADRFSVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 220

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206
           ++VIDS+ AL  R +  G  GE L   Q +L +Q L +L   IS    + VF+ NQM   
Sbjct: 221 LLVIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLARL-QKISEEYNVAVFVTNQMTAD 275

Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249
            G        P+   GG+ L   S+ R+ +R      R+  I D   +  N+
Sbjct: 276 PGAAMSFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPDMPENE 327


>gi|327272568|ref|XP_003221056.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog [Anolis
           carolinensis]
          Length = 341

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 102/231 (44%), Gaps = 36/231 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK------TGGTCAFV 101
           +S+GS   D  LG GG     I E +G   +GKT L+ HTI  + +      TGG   F+
Sbjct: 103 ISTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTICVTAQLPGADYTGGKIIFI 160

Query: 102 DAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVDI 148
           D E+       R    +   D    L N+L ++  T E  +E+ D +        G   +
Sbjct: 161 DTENTFRPDRLRDIADRFNADHDAVLDNVLYARAYTSEHQMELLDFVAAKFHEEPGIFKL 220

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMKI 207
           ++IDS+ AL  R +  G  GE L   Q +L +Q L +L   IS    + VF+ NQM    
Sbjct: 221 LIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTADP 275

Query: 208 GVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249
           G        P+   GG+ L   S+ R+ +R      R+  I D   +  N+
Sbjct: 276 GATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 326


>gi|312137146|ref|YP_004004483.1| DNA repair and recombination protein radb [Methanothermus fervidus
           DSM 2088]
 gi|311224865|gb|ADP77721.1| DNA repair and recombination protein RadB [Methanothermus fervidus
           DSM 2088]
          Length = 234

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 99/224 (44%), Gaps = 27/224 (12%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           +D  LG GG  KG I + YGP  SGKT +A+    +  K G    F+D E  L     ++
Sbjct: 19  IDEILG-GGVEKGTITQFYGPPGSGKTNIAIKLAVEVAKRGKKVIFIDTEGGLSIERVKQ 77

Query: 115 LGVD-----LKNLLISQPDT-GEQAL---EITDMLVRSG-AVDIIVIDSVAALTPRAEIE 164
           +  D       N+LI +P +  EQ +   +I  +L + G   D I++DS  AL    E  
Sbjct: 78  IAGDNFNKVAPNILIYEPSSFYEQGIVIQKINSLLKKEGKKFDAIILDSAVALYRLKEGN 137

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
                   G Q  L+ +  RK   ++  +  I    ++         GS     GG  LK
Sbjct: 138 SSKLNVELGKQMALLLRIARKYNLAVVITNHIYSLFDED--------GSNIEPVGGTTLK 189

Query: 225 FYSSVRLDIR-------RVGSIK-DKDSITGNQTRVKVVKNKMA 260
           ++S + ++++       R   +K  K+   G + R K+V+N ++
Sbjct: 190 YWSKIIVELKMGSSSGERYAILKRHKNKKEGLKVRFKIVENGLS 233


>gi|326911974|ref|XP_003202330.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog
           [Meleagris gallopavo]
          Length = 342

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 104/232 (44%), Gaps = 37/232 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           +++GS   D  LG GG     I E +G   +GKT L+ HT+  + +       TGG   F
Sbjct: 103 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGPNGYTGGKIIF 160

Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147
           +D E+       R    +  VD    L N+L ++  T E  +E+ D +       +G   
Sbjct: 161 IDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 220

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206
           +++IDS+ AL  R +  G  GE L   Q +L +Q L +L   IS    + VF+ NQM   
Sbjct: 221 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 275

Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249
            G        P+   GG+ L   S+ R+ +R      R+  I D   +  N+
Sbjct: 276 PGATMTFQADPKKPVGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 327


>gi|326781906|ref|YP_004322308.1| UvsX RecA-like protein [Synechococcus phage S-SM2]
 gi|310003096|gb|ADO97494.1| UvsX RecA-like protein [Synechococcus phage S-SM2]
          Length = 334

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 114/259 (44%), Gaps = 35/259 (13%)

Query: 34  QLGSQGS-IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-- 90
           Q    GS IF G+    SGS+        GG    +I  I G  S+GKT  +L  +    
Sbjct: 27  QFVDTGSYIFNGL---VSGSI-------FGGVSGNKITAIAGESSTGKTFFSLAVVKNFL 76

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ----ALEITDMLVRSGAV 146
                G C + D E A++       G+DL+ L++    T E+    AL+  D+ ++   V
Sbjct: 77  DANPDGYCLYFDTEAAVNKTLIASRGIDLERLVVVNVVTIEEFRSKALKAVDIYLKK-PV 135

Query: 147 D-----IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ------ALRKLTSSISRSKC 195
           D     + V+DS+  L+   EI     ++L   Q R M++      A R LT  + ++  
Sbjct: 136 DERKPCMFVLDSLGMLSTEKEIT----DALNDKQVRDMTKSQLVKGAFRMLTLKLGQANI 191

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
            ++  N     IG    + E   GG+ LK+ +S  + + +    KD  ++ GN  + K  
Sbjct: 192 PMIVTNHTYDVIGAYVPTKE-MGGGSGLKYAASSIIYLSKKKE-KDGTTVIGNLIKAKTH 249

Query: 256 KNKMASPFKQVEFDIMYGE 274
           K++++   K V   + Y E
Sbjct: 250 KSRLSKENKDVTVRLYYDE 268


>gi|118082782|ref|XP_425477.2| PREDICTED: similar to Chain A, Crystal Structure Of The Human Dmc1
           Protein [Gallus gallus]
          Length = 342

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 104/232 (44%), Gaps = 37/232 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           +++GS   D  LG GG     I E +G   +GKT L+ HT+  + +       TGG   F
Sbjct: 103 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGPKGYTGGKIIF 160

Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147
           +D E+       R    +  VD    L N+L ++  T E  +E+ D +       +G   
Sbjct: 161 IDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 220

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206
           +++IDS+ AL  R +  G  GE L   Q +L +Q L +L   IS    + VF+ NQM   
Sbjct: 221 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 275

Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249
            G        P+   GG+ L   S+ R+ +R      R+  I D   +  N+
Sbjct: 276 PGATMTFQADPKKPVGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 327


>gi|296242500|ref|YP_003649987.1| DNA repair and recombination protein RadA [Thermosphaera aggregans
           DSM 11486]
 gi|296095084|gb|ADG91035.1| DNA repair and recombination protein RadA [Thermosphaera aggregans
           DSM 11486]
          Length = 326

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 92/208 (44%), Gaps = 22/208 (10%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----LALHTIAQSQKTG--GTC 98
           I+ +++GS  LD  LG GG     I E YG   SGKT     L+++     ++ G  G  
Sbjct: 88  IKKITTGSKSLDDLLG-GGIETKTITEFYGEYGSGKTQICHQLSVNVQLPPERGGLSGKA 146

Query: 99  AFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVD 147
            +VD E           AR LG++    + N+   +    +  + I D L   V    V 
Sbjct: 147 VYVDTEGTFRWERIEAMARGLGLEPDQVMDNIFYMRAYNSDHQVSIIDDLFTFVPKNDVR 206

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++V+DSV +   RAE  G   E L   Q +L +  L +L          +V  NQ+  + 
Sbjct: 207 LVVVDSVTSHF-RAEFPGR--EHLAERQQKLNAH-LHQLMRLAEAFNIAVVVTNQVMARP 262

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
            V +G P T  GG+ L     VR+ +RR
Sbjct: 263 DVFYGDPTTAVGGHVLAHTPGVRVQLRR 290


>gi|326784273|ref|YP_004324773.1| UvsX RecA-like protein [Synechococcus phage S-SSM5]
 gi|310003504|gb|ADO97900.1| UvsX RecA-like protein [Synechococcus phage S-SSM5]
          Length = 336

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 107/253 (42%), Gaps = 16/253 (6%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQ---SQKTGGTCAFVDAEHALDSIYARKLGVD 118
           GG P  +I  I G  S+GKT   L  +     S    G   F ++E A+        G+D
Sbjct: 49  GGVPGNKITAIAGESSTGKTFFCLGIVQHFLDSDPDAGVIYF-ESESAISKQMIVDRGID 107

Query: 119 LKNLLISQPDTGE----QALEITDMLVRSGAVD----IIVIDSVAALTPRAEIE--GDMG 168
            + ++I    T E    Q+  I D  +          + V+DS+  L    E+E   +  
Sbjct: 108 AERMMIVPVSTIEEFRTQSCRILDKYMEQDENQRKPMMFVLDSLGMLASNKEVEDVANDK 167

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +     +++L+  A R LT  + ++   ++  N     IG    + E   GG+ LK+ SS
Sbjct: 168 QVRDMTKSQLIKGAFRVLTLKLGKANVPMLVTNHTYDVIGSYIPTKEMG-GGSGLKYASS 226

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
             + + +    KD   + GN  + K  K+++     QVE  + Y  G+  +  L++LG K
Sbjct: 227 TIIYLSKKKE-KDGTEVVGNIIKCKAQKSRLTKENSQVETRLYYDRGLDRYYGLLELGEK 285

Query: 289 ASIVDKSGAWFSF 301
             +  + G    F
Sbjct: 286 YGVFKRKGNRIIF 298


>gi|326783500|ref|YP_004323997.1| UvsX RecA-like protein [Synechococcus phage Syn19]
 gi|310005003|gb|ADO99393.1| UvsX RecA-like protein [Synechococcus phage Syn19]
          Length = 336

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 105/254 (41%), Gaps = 28/254 (11%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQ---SQKTGGTCAFVDAEHALDSIYARKLGVD 118
           GG P  +I  I G  S+GKT   L  +     S    G   F ++E A+        G+ 
Sbjct: 49  GGVPSNKITAIAGESSTGKTFFCLGIVQHFLDSNPDAGVIYF-ESESAISKQMIEDRGIA 107

Query: 119 LKNLLISQPDTGEQ----ALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEG----- 165
              ++I    T EQ    +  I D  +     D    + V+DS+  L+   EI       
Sbjct: 108 SDRMMIVPVATIEQFRTQSCRILDKYMEQDVADRKPLMFVLDSLGMLSTEKEIADVAADK 167

Query: 166 ---DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
              DM +S      +L+  A R LT  + ++   ++  N     IG    + E   GG+ 
Sbjct: 168 QVRDMTKS------QLIKGAFRVLTLKLGKANVPMLVTNHTYDVIGSYIPTKEMG-GGSG 220

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LK+ SS  + + +    KD   + GN  + K  K+++     QVE  + Y  G+  +  L
Sbjct: 221 LKYASSTIIYLSKKKE-KDGTEVVGNIIKCKAQKSRLTKENSQVETRLYYDRGLDRYYGL 279

Query: 283 IDLGVKASIVDKSG 296
           ++LG K  +  K G
Sbjct: 280 LELGEKYGVFTKRG 293


>gi|304569601|gb|ADM45305.1| Dmc1 [Litopenaeus vannamei]
          Length = 341

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 106/244 (43%), Gaps = 38/244 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK--------TGGTCA 99
           VS+GS  LD  LG GG     I E++G   +GKT ++ HT+  + +        +GG   
Sbjct: 101 VSTGSAELDALLG-GGIESMAITEVFGEFRTGKTQIS-HTLCVTAQIPNEAGTYSGGKVI 158

Query: 100 FVDAEHALDSIYARKLG--------VDLKNLLISQPDTGEQALEITDMLV-----RSGAV 146
           F+D E+       R +           L N+L ++  T E  LEI D +        G  
Sbjct: 159 FIDTENTFRPDRLRPIADRYNLEQDAVLDNVLYTRAFTSEHQLEILDHVAAQFHEEPGIF 218

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRM 205
            ++++DSV AL  R +  G  GE L   Q +L +Q + +L   IS    + VFI NQM  
Sbjct: 219 KLLIVDSVMALF-RVDFSG-RGE-LADRQQKL-AQYMSRL-QKISEEYNVSVFITNQMTA 273

Query: 206 KIGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVK 256
             G        P+   GG+ L   S+ R+ +R      R+  I D   +  N+    +  
Sbjct: 274 DPGAAMSFQADPKKPIGGHILAHASTTRVCLRKGRGETRIAKIYDSPELPENECTFAITA 333

Query: 257 NKMA 260
             +A
Sbjct: 334 GGIA 337


>gi|123408121|ref|XP_001303137.1| Meiotic recombination protein DMC1/LIM15 homolog [Trichomonas
           vaginalis G3]
 gi|121884492|gb|EAX90207.1| Meiotic recombination protein DMC1/LIM15 homolog, putative
           [Trichomonas vaginalis G3]
          Length = 338

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 104/227 (45%), Gaps = 39/227 (17%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT--------IAQSQKTGGTCA 99
           ++SGS  LD  LG GG     I E++G   +GKT L  HT        ++QS   G  C 
Sbjct: 103 ITSGSTELDKLLG-GGVESMSITEVFGEFRTGKTQLC-HTLCVTAQLPLSQSGGQGKVC- 159

Query: 100 FVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---I 148
           F+D E         + A++ GVD    L+N+L ++  T EQ +++        A D   +
Sbjct: 160 FIDTEGTFRPERIPVIAQRFGVDGDEALENILYARAFTHEQQMQLIQAAAAQMAEDQYRL 219

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARL--MSQALRKLTSSISRSKCILVFI-NQ-MR 204
           ++IDS+ AL  R +  G  GE L   Q  L  M  AL KL S  +    I +FI NQ M 
Sbjct: 220 LIIDSITALF-RVDFSG-RGE-LAERQQTLGQMMAALTKLASEFN----IAIFITNQVMA 272

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
                +F       GG+ L   S+ RL +R      RV  I D  S+
Sbjct: 273 SPDSALFVQAPKPIGGHILAHASTTRLYLRKGKGAERVAKIYDSPSL 319


>gi|326782913|ref|YP_004323311.1| UvsX RecA-like protein [Prochlorococcus phage P-RSM4]
 gi|310004172|gb|ADO98566.1| UvsX RecA-like protein [Prochlorococcus phage P-RSM4]
          Length = 336

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 110/267 (41%), Gaps = 35/267 (13%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQ---SQKTGGTCAFVDAEHALDSIYARKLGVD 118
           GG P  +I  I G  S+GKT   L  +     S    G   F ++E A+        G+D
Sbjct: 49  GGVPSNKITAIAGESSTGKTFFCLGIVQHFLDSDPDAGVIYF-ESESAISKQMIVDRGID 107

Query: 119 LKNLLISQPDTGE----QALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEG----- 165
              ++I    T E    Q+  I D  +     D    + V+DS+  L    E+E      
Sbjct: 108 ADRMMIVPVSTIEEFRTQSCRILDKYMEQNESDRKPMMFVLDSLGMLASNKEVEDVANDK 167

Query: 166 ---DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
              DM +S      +L+  A R LT  + ++   ++  N     IG    + E   GG+ 
Sbjct: 168 NVRDMTKS------QLIKGAFRVLTLKLGKANVPMLVTNHTYDVIGSYIPTKEMG-GGSG 220

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LK+ SS  + + +    KD   + GN  + K  K+++      VE  + Y  G+  +  L
Sbjct: 221 LKYASSTIVYLSKKKE-KDGTEVVGNIIKCKAQKSRLTKENSIVETRLYYDRGLDRYYGL 279

Query: 283 IDLGVKASIVDKSGAWFSFKGQRLGQG 309
           ++LG K  +       F+ KG R+  G
Sbjct: 280 LELGEKHGV-------FTRKGNRIMVG 299


>gi|225873140|ref|YP_002754599.1| hypothetical protein ACP_1517 [Acidobacterium capsulatum ATCC
           51196]
 gi|225794194|gb|ACO34284.1| hypothetical protein ACP_1517 [Acidobacterium capsulatum ATCC
           51196]
          Length = 341

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 1/62 (1%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P G I EI GPE SG+T +AL  +A+  ++   CA+VDA  A+D + A  +GVDL  
Sbjct: 47  GGLPVGAISEISGPECSGRTAIALSFLARMTQS-HFCAWVDAGDAMDPVSAASVGVDLNR 105

Query: 122 LL 123
           LL
Sbjct: 106 LL 107


>gi|14600463|ref|NP_146978.1| DNA repair and recombination protein RadA [Aeropyrum pernix K1]
 gi|13878703|sp|Q9YFY1|RADA_AERPE RecName: Full=DNA repair and recombination protein radA
 gi|5103509|dbj|BAA79030.1| DNA repair and recombination protein RadA [Aeropyrum pernix K1]
          Length = 319

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 97/208 (46%), Gaps = 22/208 (10%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----LALHTIAQSQKTG--GTC 98
           I+ +++GS  LD  LG GG     I E++G   SGKT     L+++      K G  G  
Sbjct: 83  IKKITTGSRNLDELLG-GGIETKTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKA 141

Query: 99  AFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVD 147
            +VD E           AR +G+D    +KN+   +       + I D L   V++  + 
Sbjct: 142 VYVDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIVDKLFTMVKNDNIK 201

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++V+DSV +   RAE  G   E+L  M+ +L+++ L +L          +V  NQ+  + 
Sbjct: 202 LVVVDSVTSHF-RAEFPGR--ENL-AMRQQLLNRHLHQLMRLADIFNVAVVITNQVMARP 257

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
            V +G P    GG+ L     VR+ +++
Sbjct: 258 DVFYGDPTQAVGGHVLGHAPGVRVYLKK 285


>gi|292656510|ref|YP_003536407.1| DNA repair and recombination protein RadB [Haloferax volcanii DS2]
 gi|47155278|emb|CAG28963.1| DNA repair and recombination protein RadB [Haloferax volcanii]
 gi|291372352|gb|ADE04579.1| DNA repair and recombination protein RadB [Haloferax volcanii DS2]
          Length = 229

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 98/210 (46%), Gaps = 31/210 (14%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE- 104
           E VS+G   LD  L  GGF +G + ++YGP ++GKT +AL    +    GGT  ++D E 
Sbjct: 3   ESVSTGCDALDDLLD-GGFERGTVTQVYGPSAAGKTNVALSAAVRVAAAGGTVVYIDTEG 61

Query: 105 -------HALDSIYARKLGVDLKNLLISQP-DTGEQALEITDMLVRSGAVDIIVIDSVAA 156
                     +++    +      L+IS+  D  +Q   + D    + + D+IV+DS   
Sbjct: 62  LSVDRFQQLAEAVAPEDVESVTSRLMISEAYDFEDQEQAVRDAEEFAASADLIVLDSATG 121

Query: 157 LTPRAE--IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
              R E   EGD GE+L     R +++ +  L S   +    +V  NQ       ++  P
Sbjct: 122 FY-RLERTAEGDGGEAL-----RRVARQVTHLLSLARKHDLAVVLTNQ-------VYADP 168

Query: 215 ET----TTGGNALKFYSS--VRLDIRRVGS 238
           ++      GG+ L+ ++   VRLD  R G+
Sbjct: 169 DSDRTRALGGHTLEHWTGTVVRLDRFRGGN 198


>gi|299137468|ref|ZP_07030650.1| RecA domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298600873|gb|EFI57029.1| RecA domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 345

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 39/62 (62%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P G + E+ GPE SG+T+ AL  +++  +TG  CA++D  ++L    A  +G+DL  
Sbjct: 47  GGLPLGAVTEMVGPECSGRTSFALSFVSRMTQTGKVCAWIDVSNSLHPESAAAVGMDLSR 106

Query: 122 LL 123
           LL
Sbjct: 107 LL 108


>gi|291336910|gb|ADD96439.1| recombination protein A [uncultured organism MedDCM-OCT-S09-C426]
          Length = 216

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 9/169 (5%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT-CAFVDAEHA 106
           VSSGSL LDI +G GG   G I+   G    GKT+ AL      QK   +   ++ +E  
Sbjct: 41  VSSGSLTLDIEMG-GGIKPG-IIRASGVAEGGKTSCALSFARNFQKMKNSMVVYIKSEGR 98

Query: 107 LDSIYARK--LGVDLKNLLISQPDTGEQALEITDMLVRSGAVD---IIVIDSVAALTPRA 161
           L     R+  L  D  +  + + +  E  +++   LV+    D   + +IDS+ AL PR 
Sbjct: 99  LSKEMIRRSGLSTDPNSWFVVKSNVYETVIDLIRQLVKDNPTDTRYMFIIDSMDALVPRG 158

Query: 162 EIEGDMGESLP-GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           ++E    E++     A L S  L+++   ++    I   I+Q+R K+ +
Sbjct: 159 DLEKSANEAIKVAGGALLSSDFLKRMALGLASRGHICFMISQVRSKVSI 207


>gi|322372270|ref|ZP_08046811.1| DNA repair and recombination protein RadB [Haladaptatus
           paucihalophilus DX253]
 gi|320548279|gb|EFW89952.1| DNA repair and recombination protein RadB [Haladaptatus
           paucihalophilus DX253]
          Length = 232

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 110/239 (46%), Gaps = 37/239 (15%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +++G   +D  LG GG  +G + ++YGP ++GKT +AL    ++ + GGT  ++D E 
Sbjct: 5   EKLTTGCPPVDDLLG-GGLERGTVTQVYGPPAAGKTNVALGATVETARDGGTVVYIDTEG 63

Query: 106 -ALDSI----YARKLGVD--LKNLLISQP-DTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            ++D       AR   VD     ++I +  D GEQ   + D+   +   D++V+DS    
Sbjct: 64  LSIDRFEQIAAARADDVDEVASRIVIKEALDFGEQQEAVKDVSEFAERADLVVLDSATGF 123

Query: 158 TPRAEIEGDM--GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
             R E   D   GE+L G+ AR ++  L     S++R   I V +         ++  P+
Sbjct: 124 Y-RLERGDDREGGEALRGV-ARQVTHLL-----SLARKHDIAVLLTNQ------VYTDPD 170

Query: 216 T----TTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           +      GG+ L+ ++ V L +         D   G   R  + K++      + +F I
Sbjct: 171 SDGTRPLGGHTLEHWTGVVLRV---------DRFRGGNRRATLEKHRSKPAGGRTQFRI 220


>gi|311255074|ref|XP_003126070.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog [Sus
           scrofa]
          Length = 340

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 37/232 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           +++GS   D  LG GG     I E +G   +GKT L+ HT+  + +       +GG   F
Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYSGGKIIF 158

Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147
           +D E+       R    +  VD    L N+L ++  T E  +E+ D +       +G   
Sbjct: 159 IDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 218

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206
           +++IDS+ AL  R +  G  GE L   Q +L +Q L +L   IS    + VF+ NQM   
Sbjct: 219 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 273

Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249
            G        P+   GG+ L   S+ R+ +R      R+  I D   +  N+
Sbjct: 274 PGATMTFQADPKKPVGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 325


>gi|18182001|dbj|BAB83908.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
          Length = 319

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 22/208 (10%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----LALHTIAQSQKTG--GTC 98
           I+ +++GS  LD  LG GG     I E++G   SGKT     L+++      K G  G  
Sbjct: 83  IKKITTGSRNLDELLG-GGIETKTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKA 141

Query: 99  AFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVD 147
            ++D E           AR +G+D    +KN+   +       + I D L   V++  + 
Sbjct: 142 VYIDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIVDKLFTMVKNDNIK 201

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++V+DSV +   RAE  G   E+L  M+ +L+++ L +L          +V  NQ+  + 
Sbjct: 202 LVVVDSVTSHF-RAEFPGR--ENL-AMRQQLLNRHLHQLMRLADIFNVAVVITNQVMARP 257

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
            V +G P    GG+ L     VR+ +++
Sbjct: 258 DVFYGDPTQAVGGHVLGHAPGVRVYLKK 285


>gi|18181985|dbj|BAB83900.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|18181995|dbj|BAB83905.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|18181997|dbj|BAB83906.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|18181999|dbj|BAB83907.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|18182003|dbj|BAB83909.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|18182005|dbj|BAB83910.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|109689234|dbj|BAE96771.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|109689238|dbj|BAE96773.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|109689240|dbj|BAE96774.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|109689242|dbj|BAE96775.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|109689244|dbj|BAE96776.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|109689246|dbj|BAE96777.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
          Length = 319

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 22/208 (10%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----LALHTIAQSQKTG--GTC 98
           I+ +++GS  LD  LG GG     I E++G   SGKT     L+++      K G  G  
Sbjct: 83  IKKITTGSRNLDELLG-GGIETKTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKA 141

Query: 99  AFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVD 147
            ++D E           AR +G+D    +KN+   +       + I D L   V++  + 
Sbjct: 142 VYIDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIVDKLFTMVKNDNIK 201

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++V+DSV +   RAE  G   E+L  M+ +L+++ L +L          +V  NQ+  + 
Sbjct: 202 LVVVDSVTSHF-RAEFPGR--ENL-AMRQQLLNRHLHQLMRLADIFNVAVVITNQVMARP 257

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
            V +G P    GG+ L     VR+ +++
Sbjct: 258 DVFYGDPTQAVGGHVLGHAPGVRVYLKK 285


>gi|126339552|ref|XP_001367929.1| PREDICTED: similar to Chain A, Crystal Structure Of The Human Dmc1
           Protein [Monodelphis domestica]
          Length = 342

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 103/232 (44%), Gaps = 37/232 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           V++GS   D  LG GG     I E +G   +GKT L+ HT+  + +        GG   F
Sbjct: 103 VTTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGTGGYPGGKIIF 160

Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147
           +D E+       R    +  VD    L N+L ++  T E  +E+ D +       +G   
Sbjct: 161 IDTENTFRPDRLRDIADRFNVDHNAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGVFK 220

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206
           +++IDS+ AL  R +  G  GE L   Q +L +Q L +L   IS    + VF+ NQM   
Sbjct: 221 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 275

Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249
            G        P+   GG+ L   S+ R+ +R      R+  I D   +  N+
Sbjct: 276 PGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPDMPENE 327


>gi|18181993|dbj|BAB83904.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
          Length = 319

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 22/208 (10%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----LALHTIAQSQKTG--GTC 98
           I+ +++GS  LD  LG GG     I E++G   SGKT     L+++      K G  G  
Sbjct: 83  IKKITTGSRNLDELLG-GGIETKTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKA 141

Query: 99  AFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVD 147
            ++D E           AR +G+D    +KN+   +       + I D L   V++  + 
Sbjct: 142 VYIDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIVDKLFTMVKNDNIK 201

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++V+DSV +   RAE  G   E+L  M+ +L+++ L +L          +V  NQ+  + 
Sbjct: 202 LVVVDSVTSHF-RAEFPGR--ENL-AMRQQLLNRHLHQLMRLADIFNVAVVITNQVMARP 257

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
            V +G P    GG+ L     VR+ +++
Sbjct: 258 DVFYGDPTQAVGGHVLGHAPGVRVYLKK 285


>gi|18181991|dbj|BAB83903.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
          Length = 319

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 22/208 (10%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----LALHTIAQSQKTG--GTC 98
           I+ +++GS  LD  LG GG     I E++G   SGKT     L+++      K G  G  
Sbjct: 83  IKKITTGSRNLDELLG-GGIETKTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKA 141

Query: 99  AFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVD 147
            ++D E           AR +G+D    +KN+   +       + I D L   V++  + 
Sbjct: 142 VYIDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIVDKLFTMVKNDNIK 201

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++V+DSV +   RAE  G   E+L  M+ +L+++ L +L          +V  NQ+  + 
Sbjct: 202 LVVVDSVTSHF-RAEFPGR--ENL-AMRQQLLNRHLHQLMRLADIFNVAVVITNQVMARP 257

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
            V +G P    GG+ L     VR+ +++
Sbjct: 258 DVFYGDPTQAVGGHVLGHAPGVRVYLKK 285


>gi|6753650|ref|NP_034189.1| meiotic recombination protein DMC1/LIM15 homolog [Mus musculus]
 gi|2500100|sp|Q61880|DMC1_MOUSE RecName: Full=Meiotic recombination protein DMC1/LIM15 homolog
 gi|961476|dbj|BAA09590.1| MmLim15 protein [Mus musculus]
 gi|1321647|dbj|BAA10969.1| DMC1 homologue [Mus musculus]
 gi|109732931|gb|AAI16768.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
           recombination (yeast) [Mus musculus]
 gi|111601086|gb|AAI19082.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
           recombination (yeast) [Mus musculus]
 gi|148672696|gb|EDL04643.1| disrupted meiotic cDNA 1 homolog, isoform CRA_a [Mus musculus]
          Length = 340

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 37/232 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           +++GS   D  LG GG     I E +G   +GKT L+ HT+  + +       +GG   F
Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGTGGYSGGKIIF 158

Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147
           +D E+       R    +  VD    L N+L ++  T E  +E+ D +       +G   
Sbjct: 159 IDTENTFRPDRLRDIADRFNVDHEAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 218

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206
           +++IDS+ AL  R +  G  GE L   Q +L +Q L +L   IS    + VF+ NQM   
Sbjct: 219 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 273

Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249
            G        P+   GG+ L   S+ R+ +R      R+  I D   +  N+
Sbjct: 274 PGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 325


>gi|149743044|ref|XP_001501634.1| PREDICTED: similar to Meiotic recombination protein DMC1/LIM15
           homolog [Equus caballus]
          Length = 340

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 37/232 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           +++GS   D  LG GG     I E +G   +GKT L+ HT+  + +       +GG   F
Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYSGGKIIF 158

Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147
           +D E+       R    +  VD    L N+L ++  T E  +E+ D +       +G   
Sbjct: 159 IDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 218

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206
           +++IDS+ AL  R +  G  GE L   Q +L +Q L +L   IS    + VF+ NQM   
Sbjct: 219 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 273

Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249
            G        P+   GG+ L   S+ R+ +R      R+  I D   +  N+
Sbjct: 274 PGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 325


>gi|297475398|ref|XP_002687971.1| PREDICTED: DMC1 dosage suppressor of mck1 homolog [Bos taurus]
 gi|296487030|gb|DAA29143.1| DMC1 dosage suppressor of mck1 homolog [Bos taurus]
          Length = 340

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 37/232 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           +++GS   D  LG GG     I E +G   +GKT L+ HT+  + +       +GG   F
Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYSGGXIIF 158

Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147
           +D E+       R    +  VD    L N+L ++  T E  +E+ D +       +G   
Sbjct: 159 IDTENTFRPDRLRDIADRFNVDHNAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 218

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206
           +++IDS+ AL  R +  G  GE L   Q +L +Q L +L   IS    + VF+ NQM   
Sbjct: 219 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 273

Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249
            G        P+   GG+ L   S+ R+ +R      R+  I D   +  N+
Sbjct: 274 PGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 325


>gi|301757528|ref|XP_002914594.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog
           [Ailuropoda melanoleuca]
          Length = 340

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 37/232 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           +++GS   D  LG GG     I E +G   +GKT L+ HT+  + +       +GG   F
Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYSGGKIIF 158

Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147
           +D E+       R    +  VD    L N+L ++  T E  +E+ D +       +G   
Sbjct: 159 IDTENTFRPDRLRDIADRFNVDHNAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 218

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206
           +++IDS+ AL  R +  G  GE L   Q +L +Q L +L   IS    + VF+ NQM   
Sbjct: 219 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 273

Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249
            G        P+   GG+ L   S+ R+ +R      R+  I D   +  N+
Sbjct: 274 PGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 325


>gi|300797730|ref|NP_001178267.1| meiotic recombination protein DMC1/LIM15 homolog [Bos taurus]
          Length = 340

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 37/232 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           +++GS   D  LG GG     I E +G   +GKT L+ HT+  + +       +GG   F
Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYSGGKIIF 158

Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147
           +D E+       R    +  VD    L N+L ++  T E  +E+ D +       +G   
Sbjct: 159 IDTENTFRPDRLRDIADRFNVDHNAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 218

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206
           +++IDS+ AL  R +  G  GE L   Q +L +Q L +L   IS    + VF+ NQM   
Sbjct: 219 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 273

Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249
            G        P+   GG+ L   S+ R+ +R      R+  I D   +  N+
Sbjct: 274 PGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 325


>gi|291290256|dbj|BAI83051.1| UvsX RecA-like recombination protein [Enterobacteria phage AR1]
          Length = 393

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 136/308 (44%), Gaps = 29/308 (9%)

Query: 7   MNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG---IG 62
           M+IVD KS+ ++A+ S++             +    F   +V+ +    L+IA+     G
Sbjct: 1   MSIVDLKSRLIKASTSKMTAEL---------TTSKFFNEKDVIRTKIPMLNIAISGAIDG 51

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQ--SQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           G   G  +   GP    K+ ++L  +A   ++     C F D+E  +   Y R +GVD +
Sbjct: 52  GMQSGLTI-FAGPSKHFKSNMSLTMVAAYLNKYPDAVCLFYDSEFGITPAYLRSMGVDPE 110

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVD-----IIVIDSVAALTPRAEIEGDMGE-SLPGM 174
            + I  P    + L+I DM+ +  A++     I+ IDS+  +  + E E  + E S+  M
Sbjct: 111 RV-IHTPIQSVEQLKI-DMVNQLEAIERGEKVIVFIDSIGNMASKKETEDALNEKSVADM 168

Query: 175 -QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
            +A+ +    R +T   S      V +N     I  MF S    TGG  +  YS+  + I
Sbjct: 169 TRAKSLKSLFRIVTPYFSIKNIPCVAVNHTIETIE-MF-SKTVMTGGTGV-MYSADTVFI 225

Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVD 293
                IKD   + G Q  + V K++      +   D+ +  GI  +  L+D+ ++   V 
Sbjct: 226 IGKRQIKDGSDLQGYQFVLNVEKSRTVKEKSKFFIDVKFDGGIDPYSGLLDMALELGFVV 285

Query: 294 KS-GAWFS 300
           K    W++
Sbjct: 286 KPKNGWYA 293


>gi|109689248|dbj|BAE96778.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|109689250|dbj|BAE96779.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|109689252|dbj|BAE96780.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|109689254|dbj|BAE96781.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
          Length = 319

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 22/208 (10%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----LALHTIAQSQKTG--GTC 98
           I+ +++GS  LD  LG GG     I E++G   SGKT     L+++      K G  G  
Sbjct: 83  IKKITTGSRNLDELLG-GGVETKTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKA 141

Query: 99  AFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVD 147
            ++D E           AR +G+D    +KN+   +       + I D L   V++  + 
Sbjct: 142 VYIDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIVDKLFTMVKNDNIK 201

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++V+DSV +   RAE  G   E+L  M+ +L+++ L +L          +V  NQ+  + 
Sbjct: 202 LVVVDSVTSHF-RAEFPGR--ENL-AMRQQLLNRHLHQLMRLADIFNVAVVITNQVMARP 257

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
            V +G P    GG+ L     VR+ +++
Sbjct: 258 DVFYGDPTQAVGGHVLGHAPGVRVYLKK 285


>gi|18181987|dbj|BAB83901.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
          Length = 319

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 22/208 (10%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----LALHTIAQSQKTG--GTC 98
           I+ +++GS  LD  LG GG     I E++G   SGKT     L+++      K G  G  
Sbjct: 83  IKKITTGSRNLDELLG-GGIETKTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKA 141

Query: 99  AFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVD 147
            ++D E           AR +G+D    +KN+   +       + I D L   V++  + 
Sbjct: 142 VYIDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIVDKLFTMVKNDNIR 201

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++V+DSV +   RAE  G   E+L  M+ +L+++ L +L          +V  NQ+  + 
Sbjct: 202 LVVVDSVTSHF-RAEFPGR--ENL-AMRQQLLNRHLHQLMRLADIFNVAVVITNQVMARP 257

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
            V +G P    GG+ L     VR+ +++
Sbjct: 258 DVFYGDPTQAVGGHVLGHAPGVRVYLKK 285


>gi|183397237|gb|ACC62173.1| Dmc1 [Penaeus monodon]
          Length = 341

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 105/244 (43%), Gaps = 38/244 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK--------TGGTCA 99
           VS+GS  LD  LG GG     I E++G   +GKT ++ HT+  + +        +GG   
Sbjct: 101 VSTGSAELDALLG-GGIESMAITEVFGEFRTGKTQIS-HTLCVTAQIPNEAGTYSGGKVI 158

Query: 100 FVDAEHALDSIYARKLG--------VDLKNLLISQPDTGEQALEITDMLV-----RSGAV 146
           F+D E+       R +           L N+L ++  T E  LEI D +        G  
Sbjct: 159 FIDTENTFRPDRLRPIADRYNLEQDAVLDNVLYTRAFTSEHQLEILDHVAAQFHEEPGIF 218

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRM 205
            ++++DSV AL  R +  G  GE L   Q +L +Q + +L   IS    + VFI NQM  
Sbjct: 219 KLLIVDSVMALF-RVDFSG-RGE-LADRQQKL-AQYMSRL-QKISEEYNVSVFITNQMTA 273

Query: 206 KIGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVK 256
             G        P+   GG+ L    + R+ +R      R+  I D   +  N+    +  
Sbjct: 274 DPGAAMSFQADPKKPIGGHILAHAPTTRVCLRKGRGETRIAKIYDSPELPENECTFAITA 333

Query: 257 NKMA 260
             +A
Sbjct: 334 GGIA 337


>gi|326784502|ref|YP_004325007.1| UvsX RecA-like protein [Prochlorococcus phage P-SSM7]
 gi|310004535|gb|ADO98927.1| UvsX RecA-like protein [Prochlorococcus phage P-SSM7]
          Length = 336

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 111/269 (41%), Gaps = 34/269 (12%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQ---SQKTGGTCAFVDAEHALDSIYARKLGVD 118
           GG P  +I  I G  S+GKT   L  +     S    G   F ++E A+        G+ 
Sbjct: 49  GGVPSNKITAIAGESSTGKTFFCLGIVQHFLDSNPDAGVIYF-ESESAISKQMIEDRGIA 107

Query: 119 LKNLLISQPDTGEQ----ALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEG----- 165
              +LI    T EQ    A  I D  V          + V+DS+  L+   EI       
Sbjct: 108 SDRMLIVPVATIEQFRTQACRILDNYVEQPEDKRQPLMFVLDSLGMLSTEKEIADVAADK 167

Query: 166 ---DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
              DM +S      +L+  A R LT  + ++   ++  N     IG    + E   GG+ 
Sbjct: 168 QVRDMTKS------QLIKGAFRVLTLKLGKANVPMLVTNHTYDVIGSYVPTKEMG-GGSG 220

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LK+ SS  + + +    KD   + GN  + K  K+++     Q+E  + Y +G+  +  L
Sbjct: 221 LKYASSTIIYLSKKKE-KDGTEVVGNIIKCKTQKSRLTKENSQIETRLYYDKGLDRYYGL 279

Query: 283 IDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           ++LG      +K G W +  G+    G++
Sbjct: 280 LELG------EKGGLWKNVAGRYEMNGKK 302


>gi|73969089|ref|XP_849984.1| PREDICTED: similar to Meiotic recombination protein DMC1/LIM15
           homolog isoform 1 [Canis familiaris]
          Length = 340

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 37/232 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           +++GS   D  LG GG     I E +G   +GKT L+ HT+  + +       +GG   F
Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYSGGKIIF 158

Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147
           +D E+       R    +  VD    L N+L ++  T E  +E+ D +       +G   
Sbjct: 159 IDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 218

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206
           +++IDS+ AL  R +  G  GE L   Q +L +Q L +L   IS    + VF+ NQM   
Sbjct: 219 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 273

Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249
            G        P+   GG+ L   S+ R+ +R      R+  I D   +  N+
Sbjct: 274 PGATMTFQADPKKPIGGHILAHASTTRVSLRKGRGELRIAKIYDSPEMPENE 325


>gi|304314045|ref|YP_003849192.1| DNA repair and recombination protein RadB [Methanothermobacter
           marburgensis str. Marburg]
 gi|302587504|gb|ADL57879.1| predicted DNA repair and recombination protein RadB
           [Methanothermobacter marburgensis str. Marburg]
          Length = 234

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 93/207 (44%), Gaps = 26/207 (12%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
            +M+LG  G +  G  +        D  LG GG  +G I + YGP +SGKT +A+    +
Sbjct: 3   TLMELGENGRLPTGSSI--------DSILG-GGVERGTITQFYGPPASGKTNIAIKLAVE 53

Query: 91  SQKTGGTCAFVDAEHALDSIYARKL-GVDLK----NLLISQPDT----GEQALEITDMLV 141
           + K      F+D E  +     R++ G   +    N+++ +P +    GE   +  ++L 
Sbjct: 54  TSKRDKKTVFIDTEGGISVERIRQVSGSSFERVADNIIVFEPSSFTEQGEAIQKTLNVLK 113

Query: 142 RSG-AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
             G +VD+IV+DS  AL    E  G       G Q  L+ Q  R+   ++     I   I
Sbjct: 114 NHGDSVDLIVLDSAVALYRLKEGNGSNFNVDLGRQLFLLLQMARRFDLAV----VITNQI 169

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYS 227
             +R   GV   SP    GG  L+++S
Sbjct: 170 YSLRGDDGVERVSP---VGGTLLRYWS 193


>gi|194474078|ref|NP_001124039.1| meiotic recombination protein DMC1/LIM15 homolog [Rattus
           norvegicus]
 gi|149065923|gb|EDM15796.1| rCG59573, isoform CRA_b [Rattus norvegicus]
          Length = 340

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 104/232 (44%), Gaps = 37/232 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           +++GS   D  LG GG     I E +G   +GKT L+ HT+  + +       +GG   F
Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGADGYSGGKIIF 158

Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147
           +D E+       R    +  VD    L N+L ++  T E  +E+ D +       +G   
Sbjct: 159 IDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 218

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206
           ++++DS+ AL  R +  G  GE L   Q +L +Q L +L   IS    + VF+ NQM   
Sbjct: 219 LLIVDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 273

Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249
            G        P+   GG+ L   S+ R+ +R      R+  I D   +  N+
Sbjct: 274 PGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 325


>gi|313125588|ref|YP_004035852.1| DNA repair and recombination protein radb [Halogeometricum
           borinquense DSM 11551]
 gi|312291953|gb|ADQ66413.1| DNA repair and recombination protein RadB [Halogeometricum
           borinquense DSM 11551]
          Length = 231

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 112/257 (43%), Gaps = 57/257 (22%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD--- 102
           E V++G   LD  LG GGF +G + ++YGP ++GKT +AL    +    GGT  ++D   
Sbjct: 3   ESVTTGCRSLDDLLG-GGFERGTVTQVYGPPAAGKTNVALSAAVRVAAAGGTVVYIDTEG 61

Query: 103 ---------AEH------ALDSIYARKLGVDLKNLLISQP-DTGEQALEITDMLVRSGAV 146
                    AEH      +++ + +R        L++S+  D  EQ   + D    +   
Sbjct: 62  LSVDRFQQLAEHVAGPEQSIEDVTSR--------LIVSEAHDFEEQEEAVRDTTEFAEQA 113

Query: 147 DIIVIDSVAALTPRAE--IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           D++V+DS      R E  ++ D GESL     R +++ +  L S   +    +V  NQ  
Sbjct: 114 DLVVLDSATGFY-RLERTMDKDGGESL-----RRVARQVTHLLSLARKHDLAVVITNQ-- 165

Query: 205 MKIGVMFGSPET----TTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
                +F  P++      GG+ L+ ++   L I         D   G   R  + K++  
Sbjct: 166 -----VFSDPDSDQIRALGGHTLEHWTGAVLRI---------DRFRGGNRRATLEKHRAK 211

Query: 261 SPFKQVEFDIMYGEGIS 277
              +   F+I  G GIS
Sbjct: 212 PAGETATFEITDG-GIS 227


>gi|84784026|gb|ABC61978.1| DMC1-like protein [Trichomonas vaginalis]
          Length = 338

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 105/226 (46%), Gaps = 37/226 (16%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI---AQ---SQKTG-GTCAF 100
           ++SGS  LD  LG GG     I E++G   +GKT L  HT+   AQ   SQ  G G   F
Sbjct: 103 ITSGSTELDKLLG-GGVESMSITEVFGEFRTGKTQLC-HTLCVTAQLPLSQGGGQGKVCF 160

Query: 101 VDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149
           +D E         + A++ GVD    L+N+L ++  T EQ +++        A D   ++
Sbjct: 161 IDTEGTFRPERIPVIAQRFGVDGDEALENILYARAFTHEQQMQLIQAAAAQMAEDQYRLL 220

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARL--MSQALRKLTSSISRSKCILVFI-NQ-MRM 205
           +IDS+ AL  R +  G  GE L   Q  L  M  AL KL S  +    I +FI NQ M  
Sbjct: 221 IIDSITALF-RVDFSG-RGE-LAERQQTLGQMMAALTKLASEFN----IAIFITNQVMAS 273

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
               +F       GG+ L   S+ RL +R      RV  I D  S+
Sbjct: 274 PDSALFVQAPKPIGGHILAHASTTRLYLRKGKGAERVAKIYDSPSL 319


>gi|320101396|ref|YP_004176988.1| DNA repair and recombination protein RadA [Desulfurococcus mucosus
           DSM 2162]
 gi|319753748|gb|ADV65506.1| DNA repair and recombination protein RadA [Desulfurococcus mucosus
           DSM 2162]
          Length = 329

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 91/209 (43%), Gaps = 24/209 (11%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-----QKTG--GT 97
           I  +++GS  LD  LG GG     I E YG   SGKT L  H ++ +     +K G  G 
Sbjct: 91  IRKITTGSRSLDELLG-GGVETKTITEFYGEYGSGKTQLC-HQLSVNVQLPLEKGGLEGR 148

Query: 98  CAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAV 146
             ++D E           AR LG+D    + N+   +    +  + I D L   +    V
Sbjct: 149 AVYIDTEGTFRWERIEAMARALGLDPDKVMDNIYYMRAYNSDHQISIVDELFTFIPKNNV 208

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++V+DSV +   RAE  G   + L   Q +L S  L +L          +V  NQ+  +
Sbjct: 209 KLVVVDSVTSHF-RAEYPGR--DHLAERQQKLNSH-LHQLVRLAEAYNVAVVVTNQVMAR 264

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRR 235
             + +G P    GG+ L     VR+ +++
Sbjct: 265 PDIFYGDPTIAVGGHVLAHTPGVRVQLKK 293


>gi|255928992|ref|YP_003097304.1| recA-like recombination protein [Synechococcus phage S-RSM4]
 gi|255705278|emb|CAR63267.1| recA-like recombination protein [Synechococcus phage S-RSM4]
          Length = 338

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 112/250 (44%), Gaps = 16/250 (6%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIA---QSQKTGGTCAFVDAEHALDSIYARKLGV 117
            GG P  ++  + G  S+GKT  AL  +    +   TGG   F ++E A+      + G+
Sbjct: 48  FGGLPSNKVTALAGESSTGKTFFALSVVRNFLRDNPTGGVIYF-ESESAISREMIEERGI 106

Query: 118 DLKNLLISQPDTGE----QALEITDMLVRSGAVD----IIVIDSVAALTPRAEIE--GDM 167
           D K +++    T E    QA  I D  ++    +    + V+DS+  L+   E+E   + 
Sbjct: 107 DSKRMIMMPVATIEEFRTQACRILDKYMKEPKDERVPMLFVLDSLGMLSTSKEMEDIAND 166

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
            +     +++L+  A R LT  + ++   +V  N     IG    + E   GG  LK+ +
Sbjct: 167 KQVRDMTKSQLIKGAFRVLTLKLGQANVPMVVTNHTYDVIGSYVPTKE-MGGGTGLKYAA 225

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE-GISFFGELIDLG 286
           S  + + +      K  + GN  + +  K+++     +V   + + E G+  +  L++LG
Sbjct: 226 STIIYLSKSKERDSKKEVVGNIIKCEAKKSRLTREGSKVATRLFFDERGLDKYYGLLELG 285

Query: 287 VKASIVDKSG 296
            +  +  +SG
Sbjct: 286 EEYGVFKRSG 295


>gi|1321636|dbj|BAA10970.1| DMC1 homologue [Homo sapiens]
          Length = 340

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 103/232 (44%), Gaps = 37/232 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           +++GS   D  LG GG     I E +G   +GKT L+ HT+  + +        GG   F
Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYPGGKIIF 158

Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147
           +D E+       R    +  VD    L N+L ++  T E  +E+ D +       +G   
Sbjct: 159 IDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 218

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206
           +++IDS+ AL  R +  G  GE L   Q +L +Q L +L   IS    + VF+ NQM   
Sbjct: 219 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 273

Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249
            G        P+   GG+ L   S+ R+ +R      R+  I D   +  N+
Sbjct: 274 PGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 325


>gi|109689236|dbj|BAE96772.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
          Length = 319

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 22/208 (10%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----LALHTIAQSQKTG--GTC 98
           I+ +++GS  LD  LG GG     I E++G   SGKT     L+++      K G  G  
Sbjct: 83  IKKITTGSRNLDELLG-GGIETKTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKA 141

Query: 99  AFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVD 147
            ++D E           AR +G+D    +KN+   +       + I D L   V++  + 
Sbjct: 142 VYIDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIVDKLFTMVKNVNIK 201

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++V+DSV +   RAE  G   E+L  M+ +L+++ L +L          +V  NQ+  + 
Sbjct: 202 LVVVDSVTSHF-RAEFPGR--ENL-AMRQQLLNRHLHQLMRLADIFNVAVVITNQVMARP 257

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
            V +G P    GG+ L     VR+ +++
Sbjct: 258 DVFYGDPTQAVGGHVLGHAPGVRVYLKK 285


>gi|1066001|dbj|BAA09932.1| HsLim15 [Homo sapiens]
          Length = 340

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 103/232 (44%), Gaps = 37/232 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           +++GS   D  LG GG     I E +G   +GKT L+ HT+  + +        GG   F
Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYPGGKIIF 158

Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147
           +D E+       R    +  VD    L N+L ++  T E  +E+ D +       +G   
Sbjct: 159 IDTENTFRPDRLRDIADRFNVDHDPVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 218

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206
           +++IDS+ AL  R +  G  GE L   Q +L +Q L +L   IS    + VF+ NQM   
Sbjct: 219 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 273

Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249
            G        P+   GG+ L   S+ R+ +R      R+  I D   +  N+
Sbjct: 274 PGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 325


>gi|291389878|ref|XP_002711438.1| PREDICTED: DMC1 dosage suppressor of mck1 homolog [Oryctolagus
           cuniculus]
          Length = 340

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 103/232 (44%), Gaps = 37/232 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           +++GS   D  LG GG     I E +G   +GKT L+ HT+  + +        GG   F
Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGASGYPGGKIIF 158

Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147
           +D E+       R    +  VD    L N+L ++  T E  +E+ D +       +G   
Sbjct: 159 IDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 218

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206
           +++IDS+ AL  R +  G  GE L   Q +L +Q L +L   IS    + VF+ NQM   
Sbjct: 219 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 273

Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249
            G        P+   GG+ L   S+ R+ +R      R+  I D   +  N+
Sbjct: 274 PGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 325


>gi|23238219|ref|NP_008999.2| meiotic recombination protein DMC1/LIM15 homolog [Homo sapiens]
 gi|109094191|ref|XP_001094012.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog [Macaca
           mulatta]
 gi|13878923|sp|Q14565|DMC1_HUMAN RecName: Full=Meiotic recombination protein DMC1/LIM15 homolog
 gi|5139483|emb|CAB45656.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
           recombination (yeast) [Homo sapiens]
 gi|40786809|gb|AAR89915.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
           recombination (yeast) [Homo sapiens]
 gi|47678503|emb|CAG30372.1| DMC1 [Homo sapiens]
 gi|109451232|emb|CAK54477.1| DMC1 [synthetic construct]
 gi|109451810|emb|CAK54776.1| DMC1 [synthetic construct]
 gi|115528933|gb|AAI25164.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
           recombination (yeast) [Homo sapiens]
 gi|115529065|gb|AAI25165.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
           recombination (yeast) [Homo sapiens]
 gi|119580653|gb|EAW60249.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
           recombination (yeast) [Homo sapiens]
 gi|158258671|dbj|BAF85306.1| unnamed protein product [Homo sapiens]
 gi|306921535|dbj|BAJ17847.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
           recombination [synthetic construct]
          Length = 340

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 103/232 (44%), Gaps = 37/232 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           +++GS   D  LG GG     I E +G   +GKT L+ HT+  + +        GG   F
Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYPGGKIIF 158

Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147
           +D E+       R    +  VD    L N+L ++  T E  +E+ D +       +G   
Sbjct: 159 IDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 218

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206
           +++IDS+ AL  R +  G  GE L   Q +L +Q L +L   IS    + VF+ NQM   
Sbjct: 219 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 273

Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249
            G        P+   GG+ L   S+ R+ +R      R+  I D   +  N+
Sbjct: 274 PGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 325


>gi|49259489|pdb|1V5W|A Chain A, Crystal Structure Of The Human Dmc1 Protein
 gi|49259490|pdb|1V5W|B Chain B, Crystal Structure Of The Human Dmc1 Protein
          Length = 343

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 104/238 (43%), Gaps = 37/238 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           +++GS   D  LG GG     I E +G   +GKT L+ HT+  + +        GG   F
Sbjct: 104 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYPGGKIIF 161

Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147
           +D E+       R    +  VD    L N+L ++  T E  +E+ D +       +G   
Sbjct: 162 IDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 221

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206
           +++IDS+ AL  R +  G  GE L   Q +L +Q L +L   IS    + VF+ NQM   
Sbjct: 222 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 276

Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
            G        P+   GG+ L   S+ R+ +R      R+  I D   +  N+    + 
Sbjct: 277 PGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAIT 334


>gi|114686387|ref|XP_515130.2| PREDICTED: similar to Chain A, Crystal Structure Of The Human Dmc1
           Protein [Pan troglodytes]
          Length = 340

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 103/232 (44%), Gaps = 37/232 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           +++GS   D  LG GG     I E +G   +GKT L+ HT+  + +        GG   F
Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYPGGKIIF 158

Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147
           +D E+       R    +  VD    L N+L ++  T E  +E+ D +       +G   
Sbjct: 159 IDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 218

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206
           +++IDS+ AL  R +  G  GE L   Q +L +Q L +L   IS    + VF+ NQM   
Sbjct: 219 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 273

Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249
            G        P+   GG+ L   S+ R+ +R      R+  I D   +  N+
Sbjct: 274 PGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 325


>gi|73969087|ref|XP_860310.1| PREDICTED: similar to Meiotic recombination protein DMC1/LIM15
           homolog isoform 2 [Canis familiaris]
          Length = 316

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 37/232 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           +++GS   D  LG GG     I E +G   +GKT L+ HT+  + +       +GG   F
Sbjct: 77  ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYSGGKIIF 134

Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147
           +D E+       R    +  VD    L N+L ++  T E  +E+ D +       +G   
Sbjct: 135 IDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 194

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206
           +++IDS+ AL  R +  G  GE L   Q +L +Q L +L   IS    + VF+ NQM   
Sbjct: 195 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 249

Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249
            G        P+   GG+ L   S+ R+ +R      R+  I D   +  N+
Sbjct: 250 PGATMTFQADPKKPIGGHILAHASTTRVSLRKGRGELRIAKIYDSPEMPENE 301


>gi|45358180|ref|NP_987737.1| DNA repair and recombination protein RadB [Methanococcus
           maripaludis S2]
 gi|6225910|sp|O50248|RADB_METMP RecName: Full=DNA repair and recombination protein radB
 gi|2665476|gb|AAB88382.1| DNA repair protein [Methanococcus maripaludis]
 gi|44920937|emb|CAF30173.1| DNA repair and recombination protein radB [Methanococcus
           maripaludis S2]
          Length = 216

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 100/210 (47%), Gaps = 25/210 (11%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL-GVD-- 118
           G   K  I +IYGP   GKT + + ++ ++ + G    ++D E +L     ++L G D  
Sbjct: 8   GNIEKKTITQIYGPPGVGKTNICIISMLKAIENGKNVVYIDTEGSLSIERIKQLSGKDCD 67

Query: 119 --LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES--LPGM 174
             LKN++I +P + E+  E  + +     V +I+ID + +L  R E+   + E+  L  M
Sbjct: 68  ELLKNIIIYEPSSFEEQSEALEKIFLLENVGLIIIDGIVSLY-RLELCDKINENTKLNRM 126

Query: 175 QARLMSQALRKLTSSISRSKCILVFI-NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
             + +S  L+     +SR K   + I NQ++  I  +        GG  L+++S   + I
Sbjct: 127 LGKQISNLLK-----VSRQKNSGILITNQVKDSINGI-----EPAGGRLLEYWSKSIIKI 176

Query: 234 RRVGSI------KDKDSITGNQTRVKVVKN 257
            +  SI      K + +  G   R K+++N
Sbjct: 177 EKSESIRKLTLEKHRHAKEGENLRFKILQN 206


>gi|297527452|ref|YP_003669476.1| DNA repair and recombination protein RadA [Staphylothermus
           hellenicus DSM 12710]
 gi|297256368|gb|ADI32577.1| DNA repair and recombination protein RadA [Staphylothermus
           hellenicus DSM 12710]
          Length = 319

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 90/206 (43%), Gaps = 24/206 (11%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  LD  LG GG     I E YG   +GKT +  H ++ S +         G   +
Sbjct: 85  ITTGSKNLDDLLG-GGIETKTITEFYGEYGTGKTQIC-HQLSVSVQLPPERGGLAGKAVY 142

Query: 101 VDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVDII 149
           VD E           AR LG+D    ++N+   +    +  + I + L   V      ++
Sbjct: 143 VDTEGTFRWERIEAMARGLGLDPDEAMENIYYQRAYNSDHQIAIVEELFSFVPEHDAKLV 202

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSV +   RAE  G   E+L   Q +L ++ L +L          +V  NQ+  +  V
Sbjct: 203 VIDSVTSHF-RAEYPGR--ENLATRQQKL-NKHLHQLVRLAEAYNIAVVVTNQVMARPDV 258

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRR 235
            +G P    GG+ L     VR+ +R+
Sbjct: 259 FYGDPTQAVGGHVLAHTPGVRIQLRK 284


>gi|50309711|ref|XP_454867.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644002|emb|CAG99954.1| KLLA0E20241p [Kluyveromyces lactis]
          Length = 369

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 98/212 (46%), Gaps = 31/212 (14%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  LG GG   G I E++G   +GK+ L  HT+A + +         G C 
Sbjct: 128 CLTTGSKNLDTLLG-GGIETGSITELFGEFRTGKSQLC-HTLAVTCQIPLDMGGGEGKCL 185

Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDI 148
           ++D E     I     A++ G+D    L N+  ++    +  L++ D    ++      +
Sbjct: 186 YIDTEGTFRPIRLVSIAQRFGLDPDDALNNVAYARAYNADHQLKLLDAAAQMMSESRFSL 245

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMK 206
           I++DS+ AL  R +  G  GE    + AR M  A  +R L     +     V  NQ+  +
Sbjct: 246 IIVDSIMALY-RTDFSG-RGE----LSARQMHLAKFMRSLQRLADQFGVAAVVTNQVVAQ 299

Query: 207 I--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           +  G+MF   P+   GGN +   S+ RL  ++
Sbjct: 300 VDGGMMFNPDPKKPIGGNIMAHSSTTRLGFKK 331


>gi|116326262|ref|YP_802982.1| RecA-like recombinase protein [Enterobacteria phage RB32]
 gi|228860974|ref|YP_002853997.1| RecA-like recombinase protein [Enterobacteria phage RB51]
 gi|228861355|ref|YP_002854376.1| RecA-like recombinase protein [Enterobacteria phage RB14]
 gi|115343855|gb|ABI94864.1| RecA-like recombinase protein [Enterobacteria phage RB32]
 gi|227438371|gb|ACP30684.1| RecA-like recombinase protein [Enterobacteria phage RB14]
 gi|227438648|gb|ACP30960.1| RecA-like recombinase protein [Enterobacteria phage RB51]
          Length = 393

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 110/249 (44%), Gaps = 16/249 (6%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQ--SQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           GG   G  +   GP    K+ ++L  +A   ++     C F D+E  +   Y R +GVD 
Sbjct: 51  GGMQSGLTI-FAGPSKHFKSNMSLTMVAAYLNKYPDAVCLFYDSEFGITPAYLRSMGVDP 109

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVD-----IIVIDSVAALTPRAEIEGDMGE-SLPG 173
           + + I  P    + L+I DM+ +  A++     I+ IDS+  +  + E E  + E S+  
Sbjct: 110 ERV-IHTPIQSVEQLKI-DMVNQLEAIERGEKVIVFIDSIGNMASKKETEDALNEKSVAD 167

Query: 174 M-QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           M +A+ +    R +T   S      V +N     I  MF S    TGG  +  YS+  + 
Sbjct: 168 MTRAKSLKSLFRIVTPYFSIKNIPCVAVNHTIETIE-MF-SKTVMTGGTGV-MYSADTVF 224

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           I     IKD   + G Q  + V K++      +   D+ +  GI  +  L+D+ ++   V
Sbjct: 225 IIGKRQIKDGSDLQGYQFVLNVEKSRTVKEKSKFFIDVKFDGGIDPYSGLLDMALELGFV 284

Query: 293 DKS-GAWFS 300
            K    W++
Sbjct: 285 VKPKNGWYA 293


>gi|288559373|ref|YP_003422859.1| DNA repair and recombination protein RadA [Methanobrevibacter
           ruminantium M1]
 gi|288542083|gb|ADC45967.1| DNA repair and recombination protein RadA [Methanobrevibacter
           ruminantium M1]
          Length = 311

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 105/207 (50%), Gaps = 25/207 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH---TIAQSQKTGG---TCAFV 101
           +++GS  +D  +G GG     I E++G   SGK+ ++     T+   ++ GG    C F+
Sbjct: 79  ITTGSKNVDELIG-GGIETQSITEVFGEFGSGKSQISHELAVTVQLPKERGGLEGECVFI 137

Query: 102 DAEHALD----SIYARKLGVD----LKNLLISQP-DTGEQAL--EITDMLVRSGA-VDII 149
           D E+          A   G+D    L+ + I++  ++  Q L  E  + L++SG  V ++
Sbjct: 138 DTENTFRPERIEQIADACGIDREEALQRIHIARAFNSSHQILMAEKINELIQSGVNVRLV 197

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMKIG 208
           ++DS+ A   RAE  G   ESL   Q +L +Q L  L   I+ +  + VF+ NQ++ +  
Sbjct: 198 IVDSLMAHF-RAEYVGR--ESLATRQQKL-NQHLHAL-QQIANTYNVAVFLTNQVQARPD 252

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRR 235
             FGSP    GG+ L   S+ R+ +++
Sbjct: 253 AFFGSPTKAIGGHVLGHASTYRIWLKK 279


>gi|330858568|ref|YP_004414943.1| putative UvsX recA-like recombination protein [Shigella phage
           Shfl2]
 gi|327397502|gb|AEA73004.1| putative UvsX recA-like recombination protein [Shigella phage
           Shfl2]
          Length = 393

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 110/249 (44%), Gaps = 16/249 (6%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQ--SQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           GG   G  +   GP    K+ ++L  +A   ++     C F D+E  +   Y R +GVD 
Sbjct: 51  GGMQSGLTI-FAGPSKHFKSNMSLTMVAAYLNKYPDAVCLFYDSEFGITPAYLRSMGVDP 109

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVD-----IIVIDSVAALTPRAEIEGDMGE-SLPG 173
           + + I  P    + L+I DM+ +  A++     I+ IDS+  +  + E E  + E S+  
Sbjct: 110 ERV-IHTPIQSVEQLKI-DMVNQLEAIERGEKVIVFIDSIGNMASKKETEDALNEKSVAD 167

Query: 174 M-QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           M +A+ +    R +T   S      V +N     I  MF S    TGG  +  YS+  + 
Sbjct: 168 MTRAKSLKSLFRIVTPYFSIKNIPCVAVNHTIETIE-MF-SKTVMTGGTGV-MYSADTVF 224

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           I     IKD   + G Q  + V K++      +   D+ +  GI  +  L+D+ ++   V
Sbjct: 225 IIGKRQIKDGSDLQGYQFVLNVEKSRTVKEKSKFFIDVKFDGGIDPYSGLLDMALELGFV 284

Query: 293 DKS-GAWFS 300
            K    W++
Sbjct: 285 VKPKNGWYA 293


>gi|150400720|ref|YP_001324486.1| DNA repair and recombination protein RadB [Methanococcus aeolicus
           Nankai-3]
 gi|150013423|gb|ABR55874.1| DNA repair and recombination protein RadB [Methanococcus aeolicus
           Nankai-3]
          Length = 213

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 94/209 (44%), Gaps = 21/209 (10%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD--- 118
           G   +  I +IYGP   GKT L + +     + G   A++D E  L +   +++  +   
Sbjct: 8   GDIERKTITQIYGPPGVGKTNLCIISAINFIRHGYKVAYIDTEGGLSTERIKQISNNNEE 67

Query: 119 ----LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
               L NL+I +P++ E+   I   L     + +I++D +A+L  R E+  D+ ++    
Sbjct: 68  FNNILNNLIIYEPESFEEQSTILKQLALIDNLGLIIVDGIASLY-RLELSDDINQN--AK 124

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS--VRLD 232
             R+M   +  L     ++   ++  NQ+              +GG  L+++S   +R+D
Sbjct: 125 VNRIMGNQILILNKISKKNNSAVLITNQI-----TDTNKGFKASGGKILEYWSKIIIRID 179

Query: 233 ----IRRVGSIKDKDSITGNQTRVKVVKN 257
               IR +   K + +  G + R K+V N
Sbjct: 180 KPNTIREMTLEKHRHAAEGQKLRYKIVNN 208


>gi|325958345|ref|YP_004289811.1| DNA repair and recombination protein radB [Methanobacterium sp.
           AL-21]
 gi|325329777|gb|ADZ08839.1| DNA repair and recombination protein radB [Methanobacterium sp.
           AL-21]
          Length = 232

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 97/219 (44%), Gaps = 28/219 (12%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LD  +G GG  KG + + YGP  SGKT +AL  + +  + G    F+D E  L     ++
Sbjct: 19  LDNLMG-GGIEKGCLTQFYGPPGSGKTNIALQLLVRCAQNGDKAIFIDTEGGLSIERVKQ 77

Query: 115 LGVD-----LKNLLISQPDTGEQALEITDML-----VRSGAVDIIVIDSVAALTPRAEIE 164
           +  +      +N++I +P T ++ +++   +      +   V++I++DS  AL    E +
Sbjct: 78  ISNNEFTSFAENIIIFEPTTFKEQIDVIKKIENLLESKKECVELIILDSAVALYRLKEGD 137

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
                   G Q  L+S+  RK          + V I      +    G  E   GG  LK
Sbjct: 138 STQINRELGQQMALLSRIARKYD--------VAVLITNHVYSVFDGDGIIE-PVGGTILK 188

Query: 225 FYSSVRLDIRRVGSIKDKDSI--------TGNQTRVKVV 255
           ++S V +++ R   + ++ +          G +TR ++V
Sbjct: 189 YWSKVVVELARSNGLGERSATLKRHRSRPEGLRTRFRIV 227


>gi|328466689|gb|EGF37817.1| recombinase A [Lactobacillus rhamnosus MTCC 5462]
          Length = 51

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/40 (67%), Positives = 31/40 (77%)

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           S YA  LGV++  LL+SQPDTGEQ LEI D LV SGA+DI
Sbjct: 12  SQYAAALGVNIDELLLSQPDTGEQGLEIADELVASGAIDI 51


>gi|126465874|ref|YP_001040983.1| DNA repair and recombination protein RadA [Staphylothermus marinus
           F1]
 gi|126014697|gb|ABN70075.1| DNA repair and recombination protein RadA [Staphylothermus marinus
           F1]
          Length = 319

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 92/205 (44%), Gaps = 22/205 (10%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----LALHTIAQSQKTG--GTCAFV 101
           +++GS  LD  LG GG     I E +G   +GKT     L+++     ++ G  G   ++
Sbjct: 85  ITTGSKNLDDLLG-GGIETKTITEFFGEYGTGKTQICHQLSVNVQLPPERGGLSGRAVYI 143

Query: 102 DAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVDIIV 150
           D E           AR LG+D    ++N+   +    +  + I + L   V    V ++V
Sbjct: 144 DTEGTFRWERIEAMARGLGLDPDEVMENIYYQRAYNSDHQIAIVEELFSFVPEHNVKLVV 203

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSV +   RAE  G   E+L   Q +L ++ L +L          +V  NQ+  +  V 
Sbjct: 204 IDSVTSHF-RAEYPGR--ENLAARQQKL-NKHLHQLVRLAEAYNIAVVVTNQVMARPDVF 259

Query: 211 FGSPETTTGGNALKFYSSVRLDIRR 235
           +G P    GG+ L     VR+ +R+
Sbjct: 260 YGDPTQAVGGHVLAHTPGVRVQLRK 284


>gi|37931470|gb|AAP13463.1| Rad51p [Kluyveromyces lactis]
          Length = 369

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 98/212 (46%), Gaps = 31/212 (14%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  LG GG   G I E++G   +GK+ L  HT+A + +         G C 
Sbjct: 128 CLTTGSKNLDTLLG-GGIETGSITELFGEFRTGKSQLC-HTLAVTCQIPLDMGGGEGKCL 185

Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDI 148
           ++D E     I     A++ G+D    L N+  ++    +  L++ D    ++      +
Sbjct: 186 YIDTEGTFRPIRLVSIAQRFGLDPDDALNNVAYARAYNADHQLKLLDAAAQMMSESRFSL 245

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMK 206
           I++DS+ AL  R +  G  GE    + AR M  A  +R L     +     V  NQ+  +
Sbjct: 246 IIVDSIMALY-RTDFSG-RGE----LSARQMHLAKFMRSLQRLADQFGVAAVVTNQVVAQ 299

Query: 207 I--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           +  G+MF   P+   GGN +   S+ RL  ++
Sbjct: 300 VDGGMMFNPDPKKPFGGNIMAHSSTTRLGFKK 331


>gi|196049702|pdb|2ZJB|A Chain A, Crystal Structure Of The Human Dmc1-M200v Polymorphic
           Variant
 gi|196049703|pdb|2ZJB|B Chain B, Crystal Structure Of The Human Dmc1-M200v Polymorphic
           Variant
          Length = 343

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 103/232 (44%), Gaps = 37/232 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           +++GS   D  LG GG     I E +G   +GKT L+ HT+  + +        GG   F
Sbjct: 104 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYPGGKIIF 161

Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147
           +D E+       R    +  VD    L N+L ++  T E  +E+ D +       +G   
Sbjct: 162 IDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQVELLDYVAAKFHEEAGIFK 221

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206
           +++IDS+ AL  R +  G  GE L   Q +L +Q L +L   IS    + VF+ NQM   
Sbjct: 222 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 276

Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249
            G        P+   GG+ L   S+ R+ +R      R+  I D   +  N+
Sbjct: 277 PGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 328


>gi|149419771|ref|XP_001519391.1| PREDICTED: similar to DMC1 homologue [Ornithorhynchus anatinus]
          Length = 293

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 104/238 (43%), Gaps = 37/238 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           V++GS   D  LG GG     I E +G   +GKT L+ HT+  + +        GG   F
Sbjct: 54  VTTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYPGGKIIF 111

Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147
           +D E+       R    +  +D    L N+L ++  T E  +E+ D +       +G   
Sbjct: 112 IDTENTFRPDRLRDIADRFNLDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 171

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206
           +++IDS+ AL  R +  G  GE L   Q +L +Q L +L   IS    + VF+ NQM   
Sbjct: 172 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTSD 226

Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
            G        P+   GG+ L   S+ R+ +R      R+  I D   +  N+    + 
Sbjct: 227 PGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAIT 284


>gi|281351151|gb|EFB26735.1| hypothetical protein PANDA_002516 [Ailuropoda melanoleuca]
          Length = 285

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 98/212 (46%), Gaps = 31/212 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           +++GS   D  LG GG     I E +G   +GKT L+ HT+  + +       +GG   F
Sbjct: 69  ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYSGGKIIF 126

Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147
           +D E+       R    +  VD    L N+L ++  T E  +E+ D +       +G   
Sbjct: 127 IDTENTFRPDRLRDIADRFNVDHNAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 186

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206
           +++IDS+ AL  R +  G  GE L   Q +L +Q L +L   IS    + VF+ NQM   
Sbjct: 187 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 241

Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIRR 235
            G        P+   GG+ L   S+ R+ +R+
Sbjct: 242 PGATMTFQADPKKPIGGHILAHASTTRISLRK 273


>gi|325968532|ref|YP_004244724.1| Rad51 domain-containing protein [Vulcanisaeta moutnovskia 768-28]
 gi|323707735|gb|ADY01222.1| Rad51 domain-containing protein [Vulcanisaeta moutnovskia 768-28]
          Length = 328

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 98/207 (47%), Gaps = 31/207 (14%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT-IAQSQKTGGTCAFVDA 103
           + V+ +G  GLD A  +GG   G   E  G   +GKT +AL T IA   + G    ++D 
Sbjct: 93  MPVLKTGVDGLDNA--VGGLRFGASHEFAGEFGTGKTIMALQTAIASISQFGFNVVYIDT 150

Query: 104 E----HALDSIYAR----KLGVDLK-----NLLISQPDTGEQ-----ALEITDMLVRSGA 145
           E    H LDS   R    + GVD +     +L +  P T +       L++TD+++ + A
Sbjct: 151 EKTIDHYLDSQLLRSMCNRFGVDYEKMISDHLYVYNPATVDDLEDFIKLKLTDLVINNNA 210

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARL--MSQALRKLTSSISRSKCILVFINQM 203
             +IV+DS+ AL  RA+  G   E L   Q RL  +   LR+LT    R   ++++ NQ+
Sbjct: 211 -KVIVVDSITALY-RAQFRGR--ERLAERQQRLHYVLDWLRRLT---IRLGVLVIYTNQV 263

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVR 230
            M     +   +   GGN L    + R
Sbjct: 264 -MTSPTGYIEVKMPVGGNVLAHTVNAR 289


>gi|308809359|ref|XP_003081989.1| Meiotic recombination protein DMC1, putative (ISS) [Ostreococcus
           tauri]
 gi|116060456|emb|CAL55792.1| Meiotic recombination protein DMC1, putative (ISS) [Ostreococcus
           tauri]
          Length = 371

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 105/218 (48%), Gaps = 35/218 (16%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK----TGGTC 98
           +G+  ++ G+  +D  L  GGF    I EI+G    GKT +  HT+A + +     GG C
Sbjct: 130 KGVLHITCGAAAVDAILN-GGFETRAITEIFGEWRCGKTQIC-HTLAVTTQMPIEMGGGC 187

Query: 99  ---AFVDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGA-- 145
              A++D E+   S      A + G+D    L N+++++ DT +Q ++    L+  GA  
Sbjct: 188 SKVAWIDTENTFRSDRLEAIADRFGLDRDAVLSNVMVARVDTVDQMMQ---ALIAIGAKM 244

Query: 146 ----VDIIVIDSVAALTPRAEI-EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
                 ++++DS+ A+     +  G++ E     + + ++Q L +L          +V  
Sbjct: 245 AEEPFKLLIVDSIMAIFRVDYVARGELSE-----RQQTLNQFLSRLRKLAEEFNVAVVLT 299

Query: 201 NQMRMKIGVM-FG--SPETTTGGNALKFYSSVRLDIRR 235
           NQ++   G M F    P+   GG+ L   S++RL +R+
Sbjct: 300 NQVQSDPGGMAFAGVEPKKPIGGHVLAHASTIRLQVRK 337


>gi|326782438|ref|YP_004322838.1| UvsX RecA-like protein [Synechococcus phage S-ShM2]
 gi|310003386|gb|ADO97783.1| UvsX RecA-like protein [Synechococcus phage S-ShM2]
          Length = 356

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 106/254 (41%), Gaps = 28/254 (11%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQ---SQKTGGTCAFVDAEHALDSIYARKLGVD 118
           GG P  +I  I G  S+GKT   L  +     S    G   F ++E A+      + G+ 
Sbjct: 69  GGVPSNKITAIAGESSTGKTFFCLGIVQHFLDSNPDAGVIYF-ESESAISRSMIEERGIA 127

Query: 119 LKNLLISQPDTGEQ----ALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEG----- 165
              ++I    T EQ    +  I D  +     D    + V+DS+  L+   EI       
Sbjct: 128 SDRMMIVPVATIEQFRTQSCRILDKYMEQDEADRKPLMFVLDSLGMLSTEKEIADVAADK 187

Query: 166 ---DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
              DM +S      +L+  A R LT  + ++   ++  N     IG      E   GG+ 
Sbjct: 188 QVRDMTKS------QLIKGAFRVLTLKLGKANVPMLVTNHTYDVIGAYVPMKEMG-GGSG 240

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LK+ +S  + + +    KD   + GN  + K  K+++     Q+E  + Y  G+  +  L
Sbjct: 241 LKYAASTIIYLSKKKE-KDGTDVIGNIIKCKAQKSRLTKENSQIETRLYYDRGLDKYYGL 299

Query: 283 IDLGVKASIVDKSG 296
           ++LG K  +  ++G
Sbjct: 300 LELGEKYGVFQRNG 313


>gi|257051990|ref|YP_003129823.1| DNA repair and recombination protein RadB [Halorhabdus utahensis
           DSM 12940]
 gi|256690753|gb|ACV11090.1| DNA repair and recombination protein RadB [Halorhabdus utahensis
           DSM 12940]
          Length = 227

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 106/231 (45%), Gaps = 31/231 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH-A 106
           +S+G   +D  LG GG  +G + +IYG  ++GKT LAL    ++   G +  ++D E  +
Sbjct: 5   ISTGCDAVDDLLG-GGLERGAVTQIYGQPAAGKTNLALGAAVETAAAGESALYLDTEGVS 63

Query: 107 LDSIY----ARKLGVDLKN-LLISQPDTGEQALE-ITDMLVRSGAVDIIVIDSVAALTPR 160
           +D +     AR    +L + +++++  T E+  E + D    +  VD+IV+DS       
Sbjct: 64  IDRLEQLADARGDVSELASRIILTEAHTFEEQQEAVRDAEEFASQVDLIVLDSATGFYRL 123

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE----T 216
              E + GE+L     R +++ +  L +   +    + F NQ       +F  P+     
Sbjct: 124 ERTEQEDGEAL-----RAVARQITHLLALARKHDLAVAFTNQ-------VFSDPDGDRVR 171

Query: 217 TTGGNALKFYSS--VRLD-----IRRVGSIKDKDSITGNQTRVKVVKNKMA 260
             GG+ L  +SS  +RLD      RR    K     TG+  R ++    M+
Sbjct: 172 PLGGHTLNHWSSLVLRLDRFRGGKRRATLEKHHAKATGDTARFQITDAGMS 222


>gi|18181989|dbj|BAB83902.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
          Length = 319

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 22/208 (10%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----LALHTIAQSQKTG--GTC 98
           I+ +++GS  LD  LG GG     I E++G   SGKT     L+++      K G  G  
Sbjct: 83  IKKITTGSRNLDELLG-GGIETKTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKA 141

Query: 99  AFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVD 147
            ++D E           AR +G+D    +KN+   +       + I D L   V++  + 
Sbjct: 142 VYIDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIVDKLFTMVKNDNIK 201

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++V+DSV +   R E  G   E+L  M+ +L+++ L +L          +V  NQ+  + 
Sbjct: 202 LVVVDSVTSHF-RVEFPGR--ENL-AMRQQLLNRHLHQLMRLADIFNVAVVITNQVMARP 257

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
            V +G P    GG+ L     VR+ +++
Sbjct: 258 DVFYGDPTQAVGGHVLGHAPGVRVYLKK 285


>gi|288931257|ref|YP_003435317.1| circadian clock protein, KaiC [Ferroglobus placidus DSM 10642]
 gi|288893505|gb|ADC65042.1| putative circadian clock protein, KaiC [Ferroglobus placidus DSM
           10642]
          Length = 224

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 3/77 (3%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           ++S+G  GLD  LG GG PKG +V + G   +GKTTL+LH I++  + G  C F+  E  
Sbjct: 2   LLSTGIPGLDKMLG-GGIPKGYVVGVIGGYGTGKTTLSLHFISEGVRRGERCIFISFEED 60

Query: 107 LDSIY--ARKLGVDLKN 121
            +SI   A+  G++L++
Sbjct: 61  EESIIETAKSFGMNLES 77


>gi|296191896|ref|XP_002743822.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog isoform
           1 [Callithrix jacchus]
          Length = 339

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 102/232 (43%), Gaps = 37/232 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           +++GS   D  LG GG     I E +G   +GKT L+ HT+  + +        GG   F
Sbjct: 100 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGDYPGGKIIF 157

Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147
           +D E+       R    +  VD    L N+L ++  T E  +E+ D +        G   
Sbjct: 158 IDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEPGIFK 217

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206
           +++IDS+ AL  R +  G  GE L   Q +L +Q L +L   IS    + VF+ NQM   
Sbjct: 218 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 272

Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249
            G        P+   GG+ L   S+ R+ +R      R+  I D   +  N+
Sbjct: 273 PGATMTFQPDPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 324


>gi|58532946|ref|YP_195169.1| UvsX RecA-like [Synechococcus phage S-PM2]
 gi|58331413|emb|CAF34199.1| UvsX RecA-like [Synechococcus phage S-PM2]
          Length = 343

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 115/261 (44%), Gaps = 19/261 (7%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA--FVDAEHALDSIYARKLGVD 118
            GG P  +I  + G   +GKT   L  +     T       + + E A+        G+D
Sbjct: 48  FGGIPSNKITALAGESGTGKTFFCLSVVRNFLNTDPDAGVIYFETESAISKQMIESRGID 107

Query: 119 LKNLLISQPDTGE----QALEITDMLVRSGAVD----IIVIDSVAALTPRAEIE-GDMGE 169
              ++I   DT E    QA+ I D  +     +    + V+DS+  L  + E+E     +
Sbjct: 108 STRMIIFPVDTIEDFRTQAVRIIDKYMEQNKSERKPLMFVLDSLGMLATKKEVEDASNDK 167

Query: 170 SLPGM-QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
            +  M +A+++  A R LT  + ++   ++  N     +G    + E   GG+ LK+ +S
Sbjct: 168 QVRDMTKAQIVKSAFRILTLKMGKANIPMLVTNHTYDVVGSYVPTKE-MGGGSGLKYSAS 226

Query: 229 VRLDIRRVGSIKDKD--SITGNQTRVKVVKNKMASPFKQVEFDIMYGE-GISFFGELIDL 285
               I  +G  K+KD   + GN  + +  K+++     +VE  + + + G+  +  +++L
Sbjct: 227 T---IVYLGKKKEKDGTDLVGNIIKCEAKKSRLTREGSKVETRLFFDQRGLERYYGMLEL 283

Query: 286 GVKASIVDKSGAWFSFKGQRL 306
           G +A +   +   +   G+++
Sbjct: 284 GERAGLWKNTAGRYEINGKKV 304


>gi|301608452|ref|XP_002933806.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog
           [Xenopus (Silurana) tropicalis]
          Length = 314

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 102/228 (44%), Gaps = 44/228 (19%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           +S+GS   D  LG GG     I E +G   +GKT LA HT+  + +       TGG   F
Sbjct: 90  ISTGSQEFDKLLG-GGIESMAITETFGEFRTGKTQLA-HTLCVTAQLPGPNGYTGGKIIF 147

Query: 101 VDAEHAL--DSIY--ARKLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147
           +D E+    D ++  A +  VD    L N+L ++  T E  +E+ D +        G   
Sbjct: 148 IDTENTFRPDRLHDIADRFSVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEPGIFK 207

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +++IDS+ AL  R +  G  GE         +++  +KL   +SR    L  I++ + K 
Sbjct: 208 LLIIDSIMALF-RVDFSG-RGE---------LAERQQKLAQMLSR----LQKISEGKFKT 252

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249
                 P+   GG+ L   S+ R+ +R      R+  I D   +  N+
Sbjct: 253 KFQ-ADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 299


>gi|327401969|ref|YP_004342808.1| DNA repair and recombination protein radB [Archaeoglobus veneficus
           SNP6]
 gi|327317477|gb|AEA48093.1| DNA repair and recombination protein radB [Archaeoglobus veneficus
           SNP6]
          Length = 221

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 92/198 (46%), Gaps = 18/198 (9%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--- 104
           + SGS  +D  LG GGF  G I +IYG  ++GKT+L L     +    G  A++D E   
Sbjct: 6   LPSGSRCIDSLLG-GGFETGTITQIYGASATGKTSLCLMLAYNTALRFGKVAYIDTEGLS 64

Query: 105 -HALDSIYARKLGVDLKNLLISQP-DTGEQALEITDM--LVRSGAVDIIVIDSVAALTPR 160
              +  I+ +  G  LKN+ I    D  +Q++ I ++  L R   V ++++DS  AL  R
Sbjct: 65  GERVKQIFEK--GEVLKNVYIYDVFDFKQQSVAIKELAKLCRKEEVRLVIVDSFTALY-R 121

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
           +E+E    E    M+  L+ Q L  L     +    +V  NQM   +      P    GG
Sbjct: 122 SELE---DERAVQMKRELVHQ-LTFLLGLARKYGLAVVITNQMFTDVKTGEDKP---LGG 174

Query: 221 NALKFYSSVRLDIRRVGS 238
            ++   S V L + R  S
Sbjct: 175 PSIDHLSKVILALERSNS 192


>gi|148643393|ref|YP_001273906.1| DNA repair and recombination protein RadA [Methanobrevibacter
           smithii ATCC 35061]
 gi|222445636|ref|ZP_03608151.1| hypothetical protein METSMIALI_01276 [Methanobrevibacter smithii
           DSM 2375]
 gi|166218764|sp|A5UMW0|RADA_METS3 RecName: Full=DNA repair and recombination protein radA
 gi|148552410|gb|ABQ87538.1| DNA repair protein RadA, RadA [Methanobrevibacter smithii ATCC
           35061]
 gi|222435201|gb|EEE42366.1| hypothetical protein METSMIALI_01276 [Methanobrevibacter smithii
           DSM 2375]
          Length = 311

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 105/208 (50%), Gaps = 27/208 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-----QKTG--GTCAF 100
           +S GS G +  +G GG     I E++G   SGK+ ++ H +A +     +K G  G C F
Sbjct: 79  ISVGSEGFNDLIG-GGIETQSITEVFGEFGSGKSQIS-HELAVTVQLPPEKGGLDGECVF 136

Query: 101 VDAEHALDSIYARK------LGVD--LKNLLISQP-DTGEQAL---EITDMLVRSGAVDI 148
           +D E+        +      L +D  L+ + +++  ++  Q L   +I +++ +   + +
Sbjct: 137 IDTENTFRPERIEQIANGFELDIDEVLQKIHVARAFNSSHQILMAEKINELIQQGNNIKL 196

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMKI 207
           +++DS+ A   RAE  G   ESL   Q +L +Q L  L   I+ +  + VFI NQ++ K 
Sbjct: 197 VIVDSLMAHF-RAEYVGR--ESLAVRQQKL-NQHLHAL-QQIANTYNVAVFITNQVQAKP 251

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
              FGSP    GG+ L   S+ R+ +++
Sbjct: 252 DSFFGSPTKAIGGHVLGHASTYRIWLKK 279


>gi|288869613|ref|ZP_05975231.2| DNA repair and recombination protein RadA [Methanobrevibacter
           smithii DSM 2374]
 gi|288860598|gb|EFC92896.1| DNA repair and recombination protein RadA [Methanobrevibacter
           smithii DSM 2374]
          Length = 314

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 105/208 (50%), Gaps = 27/208 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-----QKTG--GTCAF 100
           +S GS G +  +G GG     I E++G   SGK+ ++ H +A +     +K G  G C F
Sbjct: 82  ISVGSEGFNDLIG-GGIETQSITEVFGEFGSGKSQIS-HELAVTVQLPPEKGGLDGECVF 139

Query: 101 VDAEHALDSIYARK------LGVD--LKNLLISQP-DTGEQAL---EITDMLVRSGAVDI 148
           +D E+        +      L +D  L+ + +++  ++  Q L   +I +++ +   + +
Sbjct: 140 IDTENTFRPERIEQIANGFELDIDEVLQKIHVARAFNSSHQILMAEKINELIQQGNNIKL 199

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMKI 207
           +++DS+ A   RAE  G   ESL   Q +L +Q L  L   I+ +  + VFI NQ++ K 
Sbjct: 200 VIVDSLMAHF-RAEYVGR--ESLAVRQQKL-NQHLHAL-QQIANTYNVAVFITNQVQAKP 254

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
              FGSP    GG+ L   S+ R+ +++
Sbjct: 255 DSFFGSPTKAIGGHVLGHASTYRIWLKK 282


>gi|225874745|ref|YP_002756204.1| hypothetical protein ACP_3199 [Acidobacterium capsulatum ATCC
           51196]
 gi|225792338|gb|ACO32428.1| hypothetical protein ACP_3199 [Acidobacterium capsulatum ATCC
           51196]
          Length = 345

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           ++ +G   +D  L  GG P G + E+ GPE+SG+T LAL  +     TG  CA++D    
Sbjct: 33  MIPTGVAEMDAMLD-GGLPVGAMTEMAGPETSGRTALALSFLRSLTDTGRACAWIDVSDT 91

Query: 107 LDSIYARKLGVDLKNLL 123
            D   A  +GVDL  +L
Sbjct: 92  FDPESAAAVGVDLARVL 108


>gi|311992567|ref|YP_004009435.1| UvsX RecA-like recombination protein [Acinetobacter phage Ac42]
 gi|298684350|gb|ADI96311.1| UvsX RecA-like recombination protein [Acinetobacter phage Ac42]
          Length = 385

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 128/299 (42%), Gaps = 13/299 (4%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALG--IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           S+  +F   +++ +    L+IAL   +GG  K  +    GP    K+ +AL  ++   K 
Sbjct: 22  SKSKMFNEKDILRTKIPMLNIALSGELGGGMKSGLTIFAGPSKHFKSNMALTVVSAFMKK 81

Query: 95  --GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ-ALEITDML--VRSGAVDII 149
                C F D+E  +   Y   +GV+   ++ +   + EQ  +++ + L  V+ G   I+
Sbjct: 82  YEDAICLFYDSEFGITPEYLSAMGVNPDRVVHTPIVSVEQIKIDMANQLKAVQRGEKVIV 141

Query: 150 VIDSVAALTPRAEIEGDMGESLPG--MQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IDS+  +  + EIE    E       +A+ M    R +T   S      + IN     I
Sbjct: 142 LIDSIGNMASKKEIEDAENEKTTADMTRAKAMKSLFRIVTPYFSTKNIPCIAINHTIETI 201

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
             MF S    TGG    + +     I +   IKD   + G Q  +   K++      +  
Sbjct: 202 E-MF-SKTVMTGGTGPMYAADTVFYIGK-RQIKDGTELEGFQFVLNAEKSRYVKEKSKFF 258

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDK-SGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
            D+ +  GI  +  L+D+ ++  +V K    W++ +    G+ R  +K +  ++ +  E
Sbjct: 259 IDVTFEGGIDPYSGLLDMALELGMVVKPKNGWYARELTIDGEKRRETKSWRAKDTKCTE 317


>gi|84490269|ref|YP_448501.1| DNA repair and recombination protein RadA [Methanosphaera
           stadtmanae DSM 3091]
 gi|121731077|sp|Q2NE95|RADA_METST RecName: Full=DNA repair and recombination protein radA
 gi|84373588|gb|ABC57858.1| RadA [Methanosphaera stadtmanae DSM 3091]
          Length = 311

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 23/206 (11%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           +++GS GLD  +G GG     I E+YG   SGK+ ++      +Q         G   F+
Sbjct: 79  ITTGSKGLDELIG-GGIETQSITEVYGEFGSGKSQISHELSVTTQLPVEEGGLDGEVVFI 137

Query: 102 DAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGA-VDII 149
           D E+          A   G++    LK + +++       + + D    L++SG  + +I
Sbjct: 138 DTENTFRPERIEQIAEGFGLNIEEVLKKIHVARAFNSSHQILMADKINELIQSGVNIKLI 197

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           +IDS+ A   RAE  G   ESL   Q +L +Q L  L +  +     ++  NQ++ K   
Sbjct: 198 IIDSLMAHF-RAEYVGR--ESLATRQQKL-NQHLHTLQTIANTYNVAVLITNQVQSKPDS 253

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRR 235
            FG+P    GG+ L   S+ R+ +++
Sbjct: 254 FFGTPTKAVGGHVLGHASTYRILLKK 279


>gi|326783275|ref|YP_004323779.1| UvsX RecA-like protein [Prochlorococcus phage Syn33]
 gi|310005222|gb|ADO99611.1| UvsX RecA-like protein [Prochlorococcus phage Syn33]
          Length = 336

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 110/263 (41%), Gaps = 22/263 (8%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQ---SQKTGGTCAFVDAEHALDSIYARKLGVD 118
           GG P  +I  I G  S+GKT   L  +     S    G   F ++E A+        G+ 
Sbjct: 49  GGVPGNKITAIAGESSTGKTFFCLGIVQHFLDSNPDAGVIYF-ESESAISKQMIEDRGIA 107

Query: 119 LKNLLISQPDTGE----QALEITDMLVRSGAVD----IIVIDSVAALTPRAEIE--GDMG 168
              ++I    T E    Q+  I D  +     +    + V+DS+  L    E+E   +  
Sbjct: 108 SDRMMIVPVSTIEEFRTQSCRILDKYMEQKEDERKPLMFVLDSLGMLASNKEVEDVANDK 167

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +     +++L+  A R LT  + ++   ++  N     IG      E   GG+ LK+ SS
Sbjct: 168 QVRDMTKSQLIKGAFRVLTLKLGKANVPMLVTNHTYDVIGSYVPMKEMG-GGSGLKYASS 226

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
             + + +    KD   + GN  + K  K+++     Q+E  + Y  G+  +  L++LG  
Sbjct: 227 TIIYLSKKKE-KDGTDVVGNIIKCKAQKSRLTKENSQIETRLYYDRGLDKYYGLLELG-- 283

Query: 289 ASIVDKSGAWFSFKGQRLGQGRE 311
               +K G W +  G+    G++
Sbjct: 284 ----EKYGMWKNVAGRYEMNGKK 302


>gi|18976393|ref|NP_577750.1| DNA repair and recombination protein RadB [Pyrococcus furiosus DSM
           3638]
 gi|18891919|gb|AAL80145.1| recombinase [Pyrococcus furiosus DSM 3638]
          Length = 235

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 86/179 (48%), Gaps = 24/179 (13%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           L S+G      E++++G  GLD  LG GG  KG I+++YGP ++GKTT A+     ++  
Sbjct: 4   LKSEGVSMLNTELLTTGVKGLDELLG-GGVAKGVILQVYGPFATGKTTFAMQVGLLNE-- 60

Query: 95  GGTCAFVDAEHALDS------IYARKLGVD--LKNLLISQP-DTGEQALEITDML-VRSG 144
            G  A+VD E             +R L V+  L+  +I +P D  EQ   I  +  + + 
Sbjct: 61  -GKVAYVDTEGGFSPERLAQMAESRNLDVEKALEKFVIFEPMDLNEQRQVIARLKNIVNE 119

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
              ++V+DS  A   RAE   + GE         +S+ L+ L     R    ++ +NQ+
Sbjct: 120 KFSLVVVDSFTA-HYRAEGSREYGE---------LSKQLQVLQWIARRKNVAVIVVNQV 168


>gi|312136410|ref|YP_004003747.1| DNA repair and recombination protein rada [Methanothermus fervidus
           DSM 2088]
 gi|311224129|gb|ADP76985.1| DNA repair and recombination protein RadA [Methanothermus fervidus
           DSM 2088]
          Length = 311

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 105/208 (50%), Gaps = 27/208 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-----QKTG--GTCAF 100
           +++GS  LD  +G GG     I E++G   SGK+ LA H +A +     +K G      F
Sbjct: 79  ITTGSKALDDLIG-GGIETQSITEVFGEFGSGKSQLA-HELAVTVQLPIEKGGLEAEAVF 136

Query: 101 VDAEHALD----SIYARKLGVD----LKNLLISQP-DTGEQAL---EITDMLVRSGAVDI 148
           +D E+          A+   +D    LKN+ +++  ++  Q L   ++ D++     + +
Sbjct: 137 IDTENTFRPERIEQIAKHFKLDTKKVLKNIYVARAFNSSHQILMAEKVNDLIQEGKNIRL 196

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMKI 207
           +++DS+ +   RAE  G   E+L   Q +L +Q L  L  +++ +  I VF+ NQ++ + 
Sbjct: 197 VIVDSLTSHF-RAEYVGR--EALATRQQKL-NQHLHTL-QNLATTYNIAVFVTNQVQARP 251

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
              FGSP    GG+ L   ++ R+ +++
Sbjct: 252 DAFFGSPTKAIGGHVLGHAATYRIWLKK 279


>gi|150400229|ref|YP_001323996.1| DNA repair and recombination protein RadB [Methanococcus vannielii
           SB]
 gi|150012932|gb|ABR55384.1| DNA repair and recombination protein RadB [Methanococcus vannielii
           SB]
          Length = 213

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 6/114 (5%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-----SIYARKLG 116
           G   K  I +IYGP   GKT + + ++ ++ + G    ++D E  L       I+     
Sbjct: 8   GNIEKKTITQIYGPPGVGKTNICIISMIKTIEQGKKVVYIDTEGGLSIERVKQIFKEDFN 67

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
             LKN+L+ +P T E+  ++ + ++    + +I+ID + +L  R E+  D+ E+
Sbjct: 68  TLLKNILLYEPSTFEEQTKVLEKILLLENIGLIIIDGIVSLY-RLELCDDIVEN 120


>gi|300710264|ref|YP_003736078.1| DNA repair and recombination protein RadB [Halalkalicoccus jeotgali
           B3]
 gi|299123947|gb|ADJ14286.1| DNA repair and recombination protein RadB [Halalkalicoccus jeotgali
           B3]
          Length = 247

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 111/252 (44%), Gaps = 39/252 (15%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + +S G   +D  LG GG  +G + ++YGP ++GKT +AL    +    G   A++D E 
Sbjct: 17  DAISVGCPPIDDLLG-GGVERGTVTQVYGPPAAGKTNVALCAAVECAAAGERVAYIDTEG 75

Query: 106 ALDSIYARKL----GVDLKNL----LISQPDT-GEQALEITDMLVRSGAVDIIVIDSVAA 156
                + R L      D++ L    ++S+  T  EQ   + D    +  V +IV+DS   
Sbjct: 76  LSPDRFERLLRAHGEADVETLSSRIVVSEAHTFEEQEQAVRDAEDLAEEVSLIVLDSATG 135

Query: 157 LT--PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
                R E E + G++L     R +++ +  L +   +    ++  NQ       +F  P
Sbjct: 136 FYRLQRTEDERE-GDAL-----RSVARQVTHLLALARKHDLAVLLTNQ-------VFSDP 182

Query: 215 ETTT----GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           ++ T    GGN L+ ++         G++   D   G + R  + K++     + V+F I
Sbjct: 183 DSETVRALGGNTLEHWT---------GTVMRIDRFRGGKRRATLEKHRSKPAGESVQFRI 233

Query: 271 MYGEGISFFGEL 282
              EG+    EL
Sbjct: 234 T-DEGLESIDEL 244


>gi|146102147|ref|XP_001469294.1| RAD51/dmc1 protein [Leishmania infantum]
 gi|134073663|emb|CAM72400.1| RAD51/dmc1 protein [Leishmania infantum JPCM5]
 gi|322503308|emb|CBZ38393.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 287

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 117/264 (44%), Gaps = 47/264 (17%)

Query: 14  KALEAA--LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K +EAA  +S++  + G   + Q  +       I  +S+GS+ LD  LG GG     I E
Sbjct: 20  KIIEAARRVSEVGFITGSSCLQQRST-------ILRISTGSVALDQLLGGGGIESRSITE 72

Query: 72  IYGPESSGKTTLALHTIAQSQKT-------GGTCAFVDAEHALDS----IYARKLGVD-- 118
            +G   +GKT +  HT+  + +         G   +VD E           A + G+D  
Sbjct: 73  AFGEFRTGKTQIG-HTLCVTCQLPLEMGGGNGKAVYVDTEGTFRPERIRPIAERFGMDSN 131

Query: 119 --LKNLLISQPDTGEQALEITDMLVRSGAVD---IIVIDSVAALTPRAEIEGDMGESLPG 173
             L N+L+++  T E    +  M+    A D   ++V+DS+ AL  R +  G  GE    
Sbjct: 132 SVLDNILVARAYTHEHQAHLLSMVAAKMAEDQFSLLVVDSITALF-RVDFSGR-GELAER 189

Query: 174 MQ--ARLMSQALRKLTSSISRSKCILVFI-NQMRMKIG---VMFGSPETTTGGNALKFYS 227
            Q  A+++SQ ++     I+    I V+I NQ+    G   +    P+   GG+ L   S
Sbjct: 190 QQKLAKMLSQLMK-----IAEEFNIAVYITNQVVSDPGGASMFVADPKKPVGGHILAHAS 244

Query: 228 SVRLDIR------RVGSIKDKDSI 245
           + RL +R      RV  I D  S+
Sbjct: 245 TTRLSLRKGRGDQRVCKIFDSPSL 268


>gi|269986696|gb|EEZ92976.1| DNA repair and recombination protein RadA [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 345

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 104/237 (43%), Gaps = 29/237 (12%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ----KTG--GTC 98
           ++ +S+ S  L+I LG GG     I E YG   SGK+ LA       Q    K G  G  
Sbjct: 103 VQRISTSSEALNILLG-GGVETQSITECYGEYGSGKSQLAFQLAVDVQLPLEKGGLEGHA 161

Query: 99  AFVDAEHALDSIYARKL----GVD----LKNLLISQPDTGEQAL----EITDMLVRSGAV 146
            ++D E         +L    G+D    L+N+ I +  + +  +    ++ +++     +
Sbjct: 162 IWIDTEGTFRPSRIEQLAAVKGLDPKQALQNIKIGRAYSSDHQVLLVDKVPELINADPKI 221

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            +IV+DS+ AL  RAE  G    +L   Q ++ +  L  L     R    +   NQ+  +
Sbjct: 222 KLIVVDSMMALF-RAEYVGR--GTLVDRQQKV-NVVLHNLQRLADRFNVAVYITNQVMAR 277

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKN 257
             VMFG P    GG+ +   ++ R+ +R      RVG + D  S+   +   ++  N
Sbjct: 278 PDVMFGDPTAAVGGHIIGHVATYRIYLRKGKKGSRVGKLVDSPSLPEGEASFEITSN 334


>gi|332158291|ref|YP_004423570.1| DNA repair and recombination protein RadB [Pyrococcus sp. NA2]
 gi|331033754|gb|AEC51566.1| DNA repair and recombination protein RadB [Pyrococcus sp. NA2]
          Length = 224

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 24/167 (14%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           ++++G  GLD  LG GG  KG I+++YGP ++GKTT A+     ++   G  A+VD E  
Sbjct: 3   MLTTGVRGLDELLG-GGVAKGVILQVYGPFATGKTTFAMQVGLLNE---GKIAYVDTEGG 58

Query: 107 LD----SIYARKLGVD----LKNLLISQP-DTGEQALEITDM-LVRSGAVDIIVIDSVAA 156
                 +  A   G+D    L   +I +P D  EQ   I+ +  + +    ++VIDS+ A
Sbjct: 59  FSPERLAQMAEARGIDPEKALSKFIIFEPMDLNEQRRVISKLKTIVNDKFSLVVIDSLTA 118

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
              RAE   D GE         +++ L+ L     R    ++ +NQ+
Sbjct: 119 -HYRAEGSKDYGE---------LAKQLQVLQWLARRKNVAVIVVNQV 155


>gi|170290825|ref|YP_001737641.1| DNA repair and recombination protein RadA [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170174905|gb|ACB07958.1| DNA repair and recombination protein RadA [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 336

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 94/210 (44%), Gaps = 22/210 (10%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH---TIAQSQKTGGT-- 97
           + ++ +++GS  LD  LG GG     I EIYGP  SGKT        T+   ++ GG   
Sbjct: 99  KAVQRITTGSKALDELLG-GGVETQSITEIYGPYGSGKTQFCHQMAVTVQLDEEKGGLGR 157

Query: 98  -CAFVDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGA 145
              ++D E           A +  +D    LKN+L ++  T +  + +T+     ++   
Sbjct: 158 GAMYIDTEGTFRPERILQIAERFKLDPEHTLKNILYARAFTSDHQMIVTERAESYIKERD 217

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           + +I++DS+ +   R E  G   E+L   Q +L ++ L KL          ++  NQ+  
Sbjct: 218 IGLIIVDSLISHF-RGEYVGR--ETLAERQQKL-NKYLHKLLRLALGYNMAVIVTNQVVA 273

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
                FG P    GG+ L    + RL I+R
Sbjct: 274 DPTAFFGDPNKPAGGHVLGHGVTARLYIKR 303


>gi|290559566|gb|EFD92895.1| DNA repair and recombination protein RadA [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 348

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 108/241 (44%), Gaps = 31/241 (12%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ----KTG--GTC 98
           ++ +S+GS   +I LG GG     I E YG   SGK+ +A       Q    K G  G  
Sbjct: 106 VQRISTGSEAFNILLG-GGVETQAITECYGEYGSGKSQMAFQLAVDVQLPVEKGGLDGHA 164

Query: 99  AFVDAEHALDSIYARKL----GVD----LKNLLISQPDTGEQAL----EITDMLVRSGAV 146
            ++D E         +L    G+D    L+N+ I +  + +  +    ++ +++     +
Sbjct: 165 IWIDTEGTFRPSRIEQLAASKGLDPKQALQNIKIGRAYSSDHQVLLVNKVPELVNADPKI 224

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRM 205
            +IV+DS+ AL  RAE  G    +    +  ++   L++L    +    I V+I NQ+  
Sbjct: 225 KLIVVDSMMALF-RAEYVGRGTLADRQQKVNVVLHTLQRLADRFN----IAVYITNQVMA 279

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
           +  VMFG P    GG+ +   ++ R+ +R      RV  + D  S+   +   ++  N +
Sbjct: 280 RPDVMFGDPTAAVGGHIIGHVATYRIYLRKGKKGSRVAKLVDSPSLPEGEASFEITSNGI 339

Query: 260 A 260
           A
Sbjct: 340 A 340


>gi|326536216|ref|YP_004300647.1| UvsX RecA-like recombination protein [Acinetobacter phage 133]
 gi|47779221|gb|AAT38507.1| UvsX RecA-like recombination protein [Acinetobacter phage 133]
          Length = 387

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 102/246 (41%), Gaps = 12/246 (4%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT--GGTCAFVDAEHALDSIYARKLGVDL 119
           GG   G  +   GP    K+ + L  +A   K      C F D+E  +   Y + +GVD 
Sbjct: 49  GGMQSGLTI-FAGPSKHFKSNMGLTMVAAYMKAFPDAVCMFYDSEFGITPAYLKAMGVDP 107

Query: 120 KNLLISQPDTGEQ-ALEITDML--VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG--M 174
             ++ +   + EQ  +++T+ L  V+ G   I+ IDS+  L  + E E  + E       
Sbjct: 108 DRVIHTPVQSVEQLKIDMTNQLEEVKRGEKVIVFIDSIGNLASKKETEDALNEKTTADMT 167

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
           +A+ +    R +T   S      V +N   ++   MF S E  TGG  + + +     I 
Sbjct: 168 RAKALKSLFRIVTPYFSIKDIPCVAVNHT-LQTLEMF-SKEVMTGGTGVMYSADTVFFIG 225

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK 294
           +   +KD   + G +  +K  K++M          + +  GI  +  L+++      V K
Sbjct: 226 K-RQVKDGTELAGYEFILKAEKSRMVKEKSVFPITVKFDGGIDPYSGLLEMATDLGFVVK 284

Query: 295 SGA-WF 299
               W+
Sbjct: 285 PKVGWY 290


>gi|13161942|emb|CAC32998.1| putative DMC1 protein [Pleurotus ostreatus]
 gi|13171056|emb|CAC33176.1| DMC1 homologue [Pleurotus ostreatus]
          Length = 347

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 99/214 (46%), Gaps = 29/214 (13%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQK----TGGT 97
           +  +S+GS  +D+ LG GG     + E+YG   +GKT LA HT   +AQ         G 
Sbjct: 107 VNTISTGSKNVDVILG-GGIMSQSVSEVYGEFRTGKTQLA-HTMSVVAQLPPDLGGASGK 164

Query: 98  CAFVDAEHAL--DSIY--ARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD-- 147
            A++D E     D I   A + GVD    L+N+L ++    E  +E+ +      A D  
Sbjct: 165 VAYIDTEGTFRPDRIRSIAERFGVDGSLALENILYARAFNSEHQMELINECSMRFAEDKD 224

Query: 148 --IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
             ++++DS+ AL  R +  G  GE L   Q +L +Q L +LT         ++  NQ++ 
Sbjct: 225 FRLLIVDSIMALF-RVDYSG-RGE-LSERQQKL-AQMLSRLTKLSEEYNIAVLLTNQVQS 280

Query: 206 KIGVMF----GSPETTTGGNALKFYSSVRLDIRR 235
             G       G      GG+ L   SS RL +R+
Sbjct: 281 DPGATMTFVAGGALKPIGGHILSHASSTRLFLRK 314


>gi|254173225|ref|ZP_04879898.1| DNA repair and recombination protein RadA [Thermococcus sp. AM4]
 gi|214032634|gb|EEB73463.1| DNA repair and recombination protein RadA [Thermococcus sp. AM4]
          Length = 352

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 104/214 (48%), Gaps = 35/214 (16%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-QSQKT------GGTCAF 100
           +S+GS  LD  LG GG     I E++G   SGKT LA HT+A   QK       GG+  +
Sbjct: 116 ISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLA-HTLAVMVQKPPEEGGLGGSVIW 173

Query: 101 VDAEHALDSIYARKL----GVD----LKNLLISQP-DTGEQAL--EITDMLVRSGA---- 145
           +D E+       R++    G+D    LKN+ +++  ++  Q L  E  + +++  A    
Sbjct: 174 IDTENTFRPERIRQIAEARGLDPDETLKNIYVARAFNSNHQMLLVEKAEEIIKEKATTDR 233

Query: 146 -VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFI-N 201
            V ++V+DS+ A   R+E  G    SL   Q +L      L +L         I VF+ N
Sbjct: 234 PVKLLVVDSLMAHF-RSEYVGRG--SLAERQQKLAKHLADLHRLADLYD----IAVFVTN 286

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           Q++ K    FG P    GG+ L   +++R+ +R+
Sbjct: 287 QVQAKPDAFFGDPTRPVGGHILAHSATLRIYLRK 320


>gi|330833876|ref|YP_004408604.1| DNA repair and recombination protein RadA [Metallosphaera cuprina
           Ar-4]
 gi|329566015|gb|AEB94120.1| DNA repair and recombination protein RadA [Metallosphaera cuprina
           Ar-4]
          Length = 324

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 25/210 (11%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-----QSQKTG--GT 97
           ++ +++GS  LD  LG GG     + E++G   SGKT +  H ++      S+K G  G 
Sbjct: 86  VKKITTGSQALDGLLG-GGIETRTMTELFGEFGSGKTQIC-HQVSVNVQLPSEKGGLSGK 143

Query: 98  CAFVDAEHALDS----IYARKLGVDLKNLL-----ISQPDTGEQAL---EITDMLVRSGA 145
             ++D E    +      A  LG+D K +L     I   +T  Q     E+ D++ +   
Sbjct: 144 ALYIDTEGTFRTERIKAMASALGLDPKEVLQNIMSIRAINTDHQIAIVEELQDIISKDNT 203

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           + ++V+DS+ +   RAE  G   E+L   Q +L ++ L +L          ++  NQ+  
Sbjct: 204 IKLVVVDSITSHF-RAEYSGR--ENLAVRQQKL-NRHLHQLVRLAEIYDLAVIVTNQVMA 259

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           +  + +G P    GG+ L     +R+ I++
Sbjct: 260 RPDMFYGDPTVAVGGHTLYHVPGIRVQIKK 289


>gi|189427001|ref|YP_001950100.1| Rec A-like recombinase [Ralstonia phage RSL1]
 gi|189233313|dbj|BAG41670.1| Rec A-like recombinase [Ralstonia phage RSL1]
          Length = 481

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 36/182 (19%)

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D+  ARK G   K L +   D   QAL              I++DS  A+ P A    + 
Sbjct: 215 DANMARKYG---KGLWVPTEDGSLQAL--------------ILVDSYPAMNPEANDNEEA 257

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
             SL G+ AR  ++ L ++   +++    +V +NQ+R     M+G  E    G AL+F S
Sbjct: 258 NNSL-GLHARFFAKHLPRVKGRLAQKMVAMVGVNQLREVPMAMYGPKEKEACGQALRFNS 316

Query: 228 SVR--LDIRRVG-----------SIKDKDSITGNQTRVKVV-----KNKMASPFKQVEFD 269
            VR   + R  G            ++ + S  G + R + V     KNK+A+P +++   
Sbjct: 317 DVRNWWNSRASGMPFNAKFDGEERVEIEPSADGGKDRYRYVQVVNKKNKLANPGRKMWVR 376

Query: 270 IM 271
           I 
Sbjct: 377 IW 378


>gi|240102188|ref|YP_002958496.1| DNA repair and recombination protein RadA [Thermococcus
           gammatolerans EJ3]
 gi|239909741|gb|ACS32632.1| DNA repair and recombination protein RadA (radA) [Thermococcus
           gammatolerans EJ3]
          Length = 355

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 104/214 (48%), Gaps = 35/214 (16%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-QSQKT------GGTCAF 100
           +S+GS  LD  LG GG     I E++G   SGKT LA HT+A   QK       GG+  +
Sbjct: 119 ISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLA-HTLAVMVQKPPEEGGLGGSVIW 176

Query: 101 VDAEHALDSIYARKL----GVD----LKNLLISQP-DTGEQAL--EITDMLVRSGA---- 145
           +D E+       R++    G+D    LKN+ +++  ++  Q L  E  + +++  A    
Sbjct: 177 IDTENTFRPERIRQIAEARGLDPDEVLKNIYVARAFNSNHQMLLVEKAEEIIKEKASTDR 236

Query: 146 -VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFI-N 201
            V ++V+DS+ A   R+E  G    SL   Q +L      L +L         I VF+ N
Sbjct: 237 PVKLLVVDSLMAHF-RSEYVGRG--SLAERQQKLAKHLADLHRLADLYD----IAVFVTN 289

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           Q++ K    FG P    GG+ L   +++R+ +R+
Sbjct: 290 QVQAKPDAFFGDPTRPVGGHILAHSATLRVYLRK 323


>gi|134046023|ref|YP_001097509.1| DNA repair and recombination protein RadB [Methanococcus
           maripaludis C5]
 gi|166218767|sp|A4FYL0|RADB_METM5 RecName: Full=DNA repair and recombination protein radB
 gi|132663648|gb|ABO35294.1| DNA repair and recombination protein RadB [Methanococcus
           maripaludis C5]
          Length = 216

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 102/210 (48%), Gaps = 25/210 (11%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD--- 118
           G   K  I +IYGP   GKT + + ++ ++ + G    ++D E +L     ++L      
Sbjct: 8   GNIEKKTITQIYGPPGVGKTNICILSMLKAIENGKNVVYIDTEGSLSIERIKQLSEQDSD 67

Query: 119 --LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES--LPGM 174
             LK+++I +P + E+  E  + +     + +IVID + +L  R E+  ++ E+  L  M
Sbjct: 68  ELLKSIIIYEPSSFEEQSEALEKIFFLENIGLIVIDGIVSLY-RLELCDNINENTKLNRM 126

Query: 175 QARLMSQALRKLTSSISRSKCILVFI-NQMRMKIGVMFGSPETTTGGNALKFYSS--VRL 231
             + +S  L+     ++R K   + I NQ++  I  +        GG  L+++S   ++L
Sbjct: 127 LGKQISNLLK-----VARMKNSGILITNQVKDSINGI-----EPAGGRLLEYWSKSIIKL 176

Query: 232 D----IRRVGSIKDKDSITGNQTRVKVVKN 257
           +    IR++   K + +  G   R ++V+N
Sbjct: 177 EKTESIRKLTLEKHRHAKEGENLRFRIVQN 206


>gi|255086169|ref|XP_002509051.1| DMC1 DNA recombinase [Micromonas sp. RCC299]
 gi|226524329|gb|ACO70309.1| DMC1 DNA recombinase [Micromonas sp. RCC299]
          Length = 359

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 95/209 (45%), Gaps = 27/209 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK----TGGTC---AF 100
           + +G+  +D  LG GG P   I E+YG    GKT +  HT+A + +     GG C   AF
Sbjct: 122 IRTGADTIDAILG-GGVPTRSITEMYGEWRCGKTQIC-HTLAVTTQLPLDEGGGCAKVAF 179

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGE---QALEITDMLVRSGAVDII 149
           +D E    +      A +  +D    L N+L+++  T E    AL +           I+
Sbjct: 180 IDTEGTFRAERIVQIAERFNLDSDAVLDNILVARTFTHEMMDNALTLLAGKFSEEPFKIL 239

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM-KIG 208
           +IDS+ A   R +  G  GE L   Q RL  Q L KL          +V+ NQ++    G
Sbjct: 240 IIDSIMAHF-RVDFIG-RGE-LSERQQRL-GQFLAKLNKIADEFNIAVVYTNQVQADPSG 295

Query: 209 VMFG--SPETTTGGNALKFYSSVRLDIRR 235
           + F    P+   GG+ L   S VRL +R+
Sbjct: 296 MSFAGMDPKKAIGGHVLAHASHVRLSVRK 324


>gi|320166664|gb|EFW43563.1| HsLim15 [Capsaspora owczarzaki ATCC 30864]
          Length = 345

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 94/211 (44%), Gaps = 29/211 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK----TGGTC---AF 100
           +S+GS  L   LG GG     I EI+G   +GKT +  HT+  + +     GG C   AF
Sbjct: 106 ISTGSAELSKLLG-GGIESMAITEIFGEFRTGKTQIC-HTLCVTTQLPVEVGGACGKVAF 163

Query: 101 VDAEHAL--DSI--YARKLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147
           +D E     D +   A + G+D    L+N++ ++    E  +++ +          G   
Sbjct: 164 IDTEGTFRPDRLGPIADRFGLDRNAVLENVMFARAYNSEHQMDLINQCAAKFAEEKGVYR 223

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++++DSV A+  R +  G  GE L   Q RL  Q L +L          +V  NQM    
Sbjct: 224 LLIVDSVMAMF-RVDFSG-RGE-LAERQQRL-GQMLSRLMKIAEEFNVAVVITNQMTADP 279

Query: 208 G---VMFGSPETTTGGNALKFYSSVRLDIRR 235
           G        P+   GGN +   S+ RL +R+
Sbjct: 280 GAGLTFVPDPKKPIGGNIIAHASTTRLYLRK 310


>gi|11497963|ref|NP_069187.1| hypothetical protein AF0351 [Archaeoglobus fulgidus DSM 4304]
 gi|2650282|gb|AAB90883.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 226

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 65/124 (52%), Gaps = 15/124 (12%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           ++ +G  GLD  LG GG P+G IV + G   +GKTTL LH I +  K G  C  +  +  
Sbjct: 1   MLKTGIEGLDAILG-GGIPEGHIVAVVGQYGTGKTTLGLHFIYEGLKNGEACMIISFDED 59

Query: 107 LDSIY--ARKLGVDLK---------NLLISQPDTGEQALEITDM--LVRSGAVDIIVIDS 153
            +SI   A+ +G+DL           L  S+     + LE +D+  +VRS  V  +++DS
Sbjct: 60  EESIIGDAKSVGMDLTAFGDKVHIVRLEASEVKKSLEKLE-SDLPEIVRSLGVSRMLVDS 118

Query: 154 VAAL 157
           ++ L
Sbjct: 119 ISVL 122


>gi|170591324|ref|XP_001900420.1| Meiotic recombination protein DMC1/LIM15 homolog [Brugia malayi]
 gi|158592032|gb|EDP30634.1| Meiotic recombination protein DMC1/LIM15 homolog, putative [Brugia
           malayi]
          Length = 328

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 104/233 (44%), Gaps = 38/233 (16%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA--------QSQKTGGTCA 99
           +S+GS  LD  LG GG     I E++G   +GKT L+ HT+          S   GG   
Sbjct: 88  ISTGSRDLDKLLG-GGIESQAITEVFGEFRTGKTQLS-HTLCVMCQIASETSNFKGGKVI 145

Query: 100 FVDAEHALDSIYARKLGVDLK--------NLLISQPDTGEQALEITDMLVRS-----GAV 146
           ++D E+       R++    K        N+L ++  T +  +E+ D +        G  
Sbjct: 146 YIDTENTFRPDRLRQINERFKMDQEAMLDNILYARAYTSDHQMELLDFVAAKFHEELGIF 205

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRM 205
            ++++DS+ AL  R +  G  GE L   Q +L +Q L +L   I+    + VFI NQM  
Sbjct: 206 KLLIVDSIMALF-RVDYSG-RGE-LAERQQKL-AQMLSRL-QKIAEEYNVAVFITNQMTA 260

Query: 206 K--IGVMF-GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249
               G+ F   P+   GG+ L   S+ R+ ++      R+  I D   +  N+
Sbjct: 261 DPGAGMTFQADPKKPVGGHILAHASTTRIMLKKGRGETRIAKIYDSPDLPENE 313


>gi|72549845|ref|XP_843593.1| RAD51/dmc1 protein [Leishmania major strain Friedlin]
 gi|3132711|gb|AAC16335.1| Dmc1 homolog [Leishmania major]
 gi|323364112|emb|CBZ13119.1| RAD51/dmc1 protein [Leishmania major strain Friedlin]
          Length = 364

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 101/228 (44%), Gaps = 38/228 (16%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +S+GS  LD  LG GG     I E +G   +GKT +  HT+  + +         G   +
Sbjct: 126 ISTGSTALDQLLGGGGIESRSITEAFGEFRTGKTQIG-HTLCVTCQLPLEMGGGNGKAVY 184

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149
           VD E           A + G+D    L N+L+++  T E    +  M+    A D   ++
Sbjct: 185 VDTEGTFRPERIRPIAERFGMDSNSVLDNILVARAYTHEHQAHLLSMVAAKMAEDQFSLL 244

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQ--ARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206
           V+DS+ AL  R +  G  GE     Q  A+++SQ ++     I+    I V+I NQ+   
Sbjct: 245 VVDSITALF-RVDFSG-RGELAERQQKLAKMLSQLIK-----IAEEFNIAVYITNQVVSD 297

Query: 207 IG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
            G   +    P+   GG+ L   S+ RL +R      RV  I D  S+
Sbjct: 298 PGGASMFVADPKKPVGGHILAHASTTRLSLRKGRGDQRVCKIFDSPSL 345


>gi|311993030|ref|YP_004009896.1| RecA-like recombination protein [Enterobacteria phage CC31]
 gi|284177868|gb|ADB81534.1| RecA-like recombination protein [Enterobacteria phage CC31]
          Length = 388

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 117/276 (42%), Gaps = 19/276 (6%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIA--QSQ 92
           +   F   +VV +    L+IA+     GG   G  +   GP    K+ ++L  ++   ++
Sbjct: 22  KSKFFNEKDVVRTKIPMLNIAISGALDGGMQSGLTI-FAGPSKHFKSNMSLTMVSAYMTK 80

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML-----VRSGAVD 147
                C F D+E  +   Y R +GVD  + ++  P    + L+I DM+     +  G   
Sbjct: 81  YPDAICLFYDSEFGITPAYLRAMGVD-PDRVVHTPVQSVEQLKI-DMVNQLEEIERGEKV 138

Query: 148 IIVIDSVAALTPRAEIEGDMGE-SLPGM-QARLMSQALRKLTSSISRSKCILVFINQMRM 205
           I+ IDS+  L  + E E  + E S+  M +A+ +    R +T   S      V +N    
Sbjct: 139 IVFIDSIGNLASKKETEDALNEKSVADMTRAKSLKSLFRIVTPYFSIKNIPCVAVNHTIE 198

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
            I  MF S    TGG     YS+  + I     IKD   + G Q  +   K++      +
Sbjct: 199 TIE-MF-SKTVMTGGTG-PMYSADTVFIIGKRQIKDGTDLQGYQFVLNAEKSRTVKEKSK 255

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKS-GAWFS 300
              D+ +  GI  +  L+D+ ++   V K    W++
Sbjct: 256 FFIDVKFDGGIDPYSGLLDMALELGFVVKPKNGWYA 291


>gi|324516267|gb|ADY46476.1| Meiotic recombination protein DMC1/LIM15 [Ascaris suum]
          Length = 348

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 110/244 (45%), Gaps = 38/244 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI--------AQSQKTGGTCA 99
           +S+GS  LD  LG GG     I E++G   +GKT L+ HT+        A +   GG   
Sbjct: 108 ISTGSRELDKLLG-GGIESQAITEVFGEFRTGKTQLS-HTLCATCQMPNAATSFKGGKVI 165

Query: 100 FVDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLVRS-----GAV 146
           F+D E+       R    +  +D    L N+L ++  T +  +E+ D +        G  
Sbjct: 166 FIDTENTFRPDRLRQICDRFNMDQEAMLDNVLYARAYTSDHQVELLDYVAAKFHEELGVF 225

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRM 205
            ++++DSV AL  R +  G  GE L   Q +L +Q + +L   I+    I VFI NQM  
Sbjct: 226 KLLIVDSVMALF-RVDYSG-RGE-LAERQQKL-AQMMSRL-QKIAEEYNIAVFITNQMTA 280

Query: 206 K--IGVMF-GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVK 256
               G+ F   P+   GG+ L   S+ R+ ++      R+  I D   +  N+    + +
Sbjct: 281 DPGAGMTFQADPKKPIGGHILAHASTTRIMLKKGRGETRIAKIYDSPDMPENEATFAITE 340

Query: 257 NKMA 260
             +A
Sbjct: 341 GGVA 344


>gi|13878673|sp|P81415|RADB_PYRFU RecName: Full=DNA repair and recombination protein radB
 gi|2967439|dbj|BAA25166.1| unnamed protein product [Pyrococcus furiosus DSM 3638]
 gi|3560539|gb|AAC34999.1| recombinase [Pyrococcus furiosus DSM 3638]
          Length = 225

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 24/168 (14%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E++++G  GLD  LG GG  KG I+++YGP ++GKTT A+     ++   G  A+VD E 
Sbjct: 5   ELLTTGVKGLDELLG-GGVAKGVILQVYGPFATGKTTFAMQVGLLNE---GKVAYVDTEG 60

Query: 106 ALDS------IYARKLGVD--LKNLLISQP-DTGEQALEITDML-VRSGAVDIIVIDSVA 155
                       +R L V+  L+  +I +P D  EQ   I  +  + +    ++V+DS  
Sbjct: 61  GFSPERLAQMAESRNLDVEKALEKFVIFEPMDLNEQRQVIARLKNIVNEKFSLVVVDSFT 120

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           A   RAE   + GE         +S+ L+ L     R    ++ +NQ+
Sbjct: 121 A-HYRAEGSREYGE---------LSKQLQVLQWIARRKNVAVIVVNQV 158


>gi|33620615|ref|NP_891595.1| UvsX [Enterobacteria phage RB49]
 gi|157311325|ref|YP_001469368.1| UvsX RecA-like recombination protein [Enterobacteria phage Phi1]
 gi|33438515|gb|AAL87837.2|AF410869_9 UvsX [Enterobacteria phage RB49]
 gi|149380529|gb|ABR24534.1| UvsX RecA-like recombination protein [Enterobacteria phage Phi1]
          Length = 356

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 105/251 (41%), Gaps = 22/251 (8%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIA--QSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           GF  G I    GP    K+ + L  ++    Q     C F D+E  + S Y   +GVD  
Sbjct: 49  GFQSGLIF-FAGPSKHFKSNMGLTCVSAYMKQNPDAACLFFDSEFGITSAYLESMGVDPD 107

Query: 121 NLL-ISQPDTGEQALEITDMLVRSGAVD--IIVIDSVAALTPRAEIEGDMGE-SLPGM-Q 175
            ++ +   +  E   EI + L +    D  II IDS+  L  + E+E  + E S   M +
Sbjct: 108 RVVHVPIKNIEELKFEIMNQLEQITREDKVIIFIDSIGNLASKKEVEDAINEKSAQDMTR 167

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           A+ +    R +T  ++ +    + IN    +   MF     + G  A+  YS+  + I  
Sbjct: 168 AKALKGLFRMVTPYLTMNDIPCIAINHT-YETQEMFSKTVMSGGTGAM--YSANEVFIIG 224

Query: 236 VGSIKDKDSITG-----NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK-A 289
               K+   ITG     N  + + VK K   P       + +  GI  +  L++L V+  
Sbjct: 225 RRQQKEGTEITGYDFILNAEKSRTVKEKSKFP-----ISVTFSGGIDPYSGLLELAVELG 279

Query: 290 SIVDKSGAWFS 300
            +V  S  W+S
Sbjct: 280 WVVKPSNGWYS 290


>gi|327401023|ref|YP_004341862.1| putative circadian clock protein KaiC [Archaeoglobus veneficus
           SNP6]
 gi|327316531|gb|AEA47147.1| putative circadian clock protein, KaiC [Archaeoglobus veneficus
           SNP6]
          Length = 228

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 13/125 (10%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+ +G  GLD  LG GG PKG IV + G   +GKTTL LH I +  K   TC  +  +
Sbjct: 1   MDVLPTGIEGLDRLLG-GGIPKGHIVAVIGSYGTGKTTLGLHFIYEGLKNDETCIIISFD 59

Query: 105 HALDSIY--ARKLGVDLKNLLISQPDTGEQALEITDML----------VRSGAVDIIVID 152
               SI   A   G+D++    +   T  +A EI + L          ++S     I+ID
Sbjct: 60  EDEKSILENASSFGMDMERYSDNLEITRLEAAEIKESLRKIKSDLPEVIKSLNASRILID 119

Query: 153 SVAAL 157
           S++  
Sbjct: 120 SISVF 124


>gi|88603695|ref|YP_503873.1| ATPase [Methanospirillum hungatei JF-1]
 gi|88189157|gb|ABD42154.1| ATPase [Methanospirillum hungatei JF-1]
          Length = 234

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 106/244 (43%), Gaps = 29/244 (11%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--- 104
           VSSG+  LD  +G G +P+  I +I+G   SGK++L L       K G +  + D E   
Sbjct: 6   VSSGNAALDDLMGTG-YPRKMITQIFGEPGSGKSSLCLMAAVSVLKQGESVVYFDTESFS 64

Query: 105 -HALDSIYARKLGVDLKNLLISQP-DTGEQALEI--TDMLVRSGAVDIIVIDSVAALTPR 160
                 I   +       L + +P D  +QAL I  ++ ++R     II++DS   L  R
Sbjct: 65  AERFSQIAGDEAATLADRLFLYEPVDFNQQALMILESEDVIREQKAGIIILDSATGLY-R 123

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
            E+E  + E+L     +  ++ +  L     R    ++  NQ+ M I     +P    GG
Sbjct: 124 TELE-HIQEAL-----QKFNRQMTMLLGYAKRYDIPVLISNQVYMDISRGDFAP---LGG 174

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
             L   S + L I R    +D      N  R++V+K+  A P       I+  EGI    
Sbjct: 175 TGLYHLSKIILQIER----RD------NTRRIRVMKHH-ARPEGTYIDVILVQEGIRIID 223

Query: 281 ELID 284
           E ++
Sbjct: 224 EYLE 227


>gi|322495734|emb|CBZ31040.1| RAD51/dmc1 protein [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 358

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 101/228 (44%), Gaps = 38/228 (16%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +S+GS  LD  LG GG     I E +G   +GKT +  HT+  + +         G   +
Sbjct: 120 ISTGSTALDQLLGGGGIESRSITEAFGEFRTGKTQIG-HTLCVTCQLPLEMGGGNGKAVY 178

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149
           VD E           A + G+D    L N+L+++  T E    +  M+    A D   ++
Sbjct: 179 VDTEGTFRPERIRPIAERFGMDSNSVLDNILVARAYTHEHQAHLLSMVAAKMAEDQFSLL 238

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQ--ARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206
           V+DS+ AL  R +  G  GE     Q  A+++SQ ++     I+    I V+I NQ+   
Sbjct: 239 VVDSITALF-RVDFSG-RGELAERQQKLAKMLSQLIK-----IAEEFNIAVYITNQVVSD 291

Query: 207 IG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
            G   +    P+   GG+ L   S+ RL +R      RV  I D  S+
Sbjct: 292 PGGASMFVADPKKPVGGHILAHASTTRLSLRKGRGDQRVCKIFDSPSL 339


>gi|15897194|ref|NP_341799.1| DNA repair and recombination protein RadA [Sulfolobus solfataricus
           P2]
 gi|284174439|ref|ZP_06388408.1| DNA repair and recombination protein RadA [Sulfolobus solfataricus
           98/2]
 gi|14286170|sp|Q55075|RADA_SULSO RecName: Full=DNA repair and recombination protein radA
 gi|126030236|pdb|2DFL|A Chain A, Crystal Structure Of Left-Handed Rada Filament
 gi|160286393|pdb|2Z43|A Chain A, Structure Of A Twinned Crystal Of Rada
 gi|160286394|pdb|2Z43|B Chain B, Structure Of A Twinned Crystal Of Rada
 gi|160286395|pdb|2Z43|C Chain C, Structure Of A Twinned Crystal Of Rada
 gi|226438154|pdb|2ZUB|A Chain A, Left Handed Rada
 gi|226438155|pdb|2ZUB|B Chain B, Left Handed Rada
 gi|226438156|pdb|2ZUC|A Chain A, Crystal Structure Of Left-Handed Rada Filament
 gi|226438157|pdb|2ZUC|B Chain B, Crystal Structure Of Left-Handed Rada Filament
 gi|226438158|pdb|2ZUD|A Chain A, Crystal Structure Of Left-Handed Rada Filament
 gi|226438159|pdb|2ZUD|B Chain B, Crystal Structure Of Left-Handed Rada Filament
 gi|13813387|gb|AAK40589.1| DNA repair protein radA (radA) [Sulfolobus solfataricus P2]
 gi|261601861|gb|ACX91464.1| DNA repair and recombination protein RadA [Sulfolobus solfataricus
           98/2]
          Length = 324

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 97/210 (46%), Gaps = 25/210 (11%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-----QSQKTG--GT 97
           ++ +S+GS  LD  L  GG     + E +G   SGKT L  H ++       +K G  G 
Sbjct: 86  VKKISTGSQALD-GLLAGGIETRTMTEFFGEFGSGKTQLC-HQLSVNVQLPPEKGGLSGK 143

Query: 98  CAFVDAEHALD----SIYARKLGVDLKNLL-----ISQPDTGEQALEITDM---LVRSGA 145
             ++D E           A+ LG+D+ N++     I   +T  Q   + D+   + +  +
Sbjct: 144 AVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPS 203

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           + +IV+DSV +   RAE  G   E+L   Q +L ++ L +LT         ++  NQ+  
Sbjct: 204 IKLIVVDSVTSHF-RAEYPGR--ENLAVRQQKL-NKHLHQLTRLAEVYDIAVIITNQVMA 259

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           +  + +G P    GG+ L     +R+ +++
Sbjct: 260 RPDMFYGDPTVAVGGHTLYHVPGIRIQLKK 289


>gi|303284847|ref|XP_003061714.1| DMC1 DNA recombinase [Micromonas pusilla CCMP1545]
 gi|226457044|gb|EEH54344.1| DMC1 DNA recombinase [Micromonas pusilla CCMP1545]
          Length = 371

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 101/212 (47%), Gaps = 33/212 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK----TGGTC---AF 100
           ++SG+  +D  L  GGFP   + EIYG   +GKT +  HT+A + +     GG C   A+
Sbjct: 134 ITSGAETIDNVLK-GGFPTRCLTEIYGEWRTGKTQIC-HTLAVTTQLPLNEGGGCAKVAW 191

Query: 101 VDAEHAL--DSI--YARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGA------V 146
           +D E     D I   A +  +D    L N+L+++  T E    +T+ LV   A       
Sbjct: 192 IDTEGTFRPDRIEKIAERFNLDAEAVLDNILVAKTFTHEM---MTNCLVALAARFSEEPF 248

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM- 205
            +++IDS+ A   R +  G  GE L   Q +L  Q   KL          +V+ NQ++  
Sbjct: 249 KLLIIDSIMAHF-RVDFTG-RGE-LSERQQKL-GQFCSKLQKIADEFNIAVVYTNQVQAD 304

Query: 206 KIGVMFG--SPETTTGGNALKFYSSVRLDIRR 235
             G+ F    P+   GG+ L   S++RL +R+
Sbjct: 305 PSGMSFAGMDPKKAIGGHVLAHASTIRLSVRK 336


>gi|124485461|ref|YP_001030077.1| DNA repair and recombination protein RadA [Methanocorpusculum
           labreanum Z]
 gi|226736607|sp|A2SR54|RADA_METLZ RecName: Full=DNA repair and recombination protein radA
 gi|124363002|gb|ABN06810.1| DNA repair and recombination protein RadA [Methanocorpusculum
           labreanum Z]
          Length = 329

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 36/206 (17%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHAL--DSIYAR 113
           GG     I E+YG   SGK+ +A       Q        GG+C ++D E+    + I   
Sbjct: 95  GGLETQAITELYGEFGSGKSQIAHQLAVNCQLPQELGGLGGSCLYIDTENTFRPERIEQM 154

Query: 114 KLGVDLKNL----LISQPD-------------TGEQAL------EITDMLVRSG-AVDII 149
             G++L +L    ++  PD             +  Q L      E+++ L  SG  V ++
Sbjct: 155 AEGLELADLPEGYVVPTPDEFLANIHVARAHSSDHQMLLIDAARELSNELTASGLPVKLV 214

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           +IDS+ +L  R+E  G    +L G Q +L ++ +  L   +     + +  NQ+    G+
Sbjct: 215 IIDSLTSLF-RSEYAGR--GTLAGRQQKL-NRHMHDLFKLVDDLNAVALVTNQVMANPGL 270

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRR 235
           +FG P    GGN +   ++ R+ +R+
Sbjct: 271 LFGDPTKPIGGNIVGHTATYRVYLRK 296


>gi|227828152|ref|YP_002829932.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           M.14.25]
 gi|227830859|ref|YP_002832639.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           L.S.2.15]
 gi|229579745|ref|YP_002838144.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           Y.G.57.14]
 gi|229581586|ref|YP_002839985.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           Y.N.15.51]
 gi|229585381|ref|YP_002843883.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           M.16.27]
 gi|238620342|ref|YP_002915168.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           M.16.4]
 gi|284998366|ref|YP_003420134.1| DNA repair or recombination protein RadA [Sulfolobus islandicus
           L.D.8.5]
 gi|259551812|sp|C3MZK6|RADA_SULIA RecName: Full=DNA repair and recombination protein radA
 gi|259551815|sp|C4KIT6|RADA_SULIK RecName: Full=DNA repair and recombination protein radA
 gi|259551818|sp|C3MRI1|RADA_SULIL RecName: Full=DNA repair and recombination protein radA
 gi|259551822|sp|C3MY77|RADA_SULIM RecName: Full=DNA repair and recombination protein radA
 gi|259551825|sp|C3NFU5|RADA_SULIN RecName: Full=DNA repair and recombination protein radA
 gi|259551829|sp|C3N7M8|RADA_SULIY RecName: Full=DNA repair and recombination protein radA
 gi|227457307|gb|ACP35994.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           L.S.2.15]
 gi|227459948|gb|ACP38634.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           M.14.25]
 gi|228010460|gb|ACP46222.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           Y.G.57.14]
 gi|228012302|gb|ACP48063.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           Y.N.15.51]
 gi|228020431|gb|ACP55838.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           M.16.27]
 gi|238381412|gb|ACR42500.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           M.16.4]
 gi|284446262|gb|ADB87764.1| DNA repair or recombination protein RadA [Sulfolobus islandicus
           L.D.8.5]
 gi|323475205|gb|ADX85811.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           REY15A]
 gi|323477937|gb|ADX83175.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           HVE10/4]
          Length = 324

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 97/210 (46%), Gaps = 25/210 (11%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-----QSQKTG--GT 97
           ++ +S+GS  LD  L  GG     + E +G   SGKT L  H ++       +K G  G 
Sbjct: 86  VKKISTGSQALD-GLLAGGIETRTMTEFFGEFGSGKTQLC-HQLSVNVQLPPEKGGLSGK 143

Query: 98  CAFVDAEHALD----SIYARKLGVDLKNLL-----ISQPDTGEQALEITDM---LVRSGA 145
             ++D E           A+ LG+D+ N++     I   +T  Q   + D+   + +  +
Sbjct: 144 AVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPS 203

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           + +IV+DSV +   RAE  G   E+L   Q +L ++ L +LT         ++  NQ+  
Sbjct: 204 IKLIVVDSVTSHF-RAEYPGR--ENLAVRQQKL-NKHLHQLTRLAEVYDIAVIITNQVMA 259

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           +  + +G P    GG+ L     +R+ +++
Sbjct: 260 RPDMFYGDPTVAVGGHTLYHVPGIRIQLKK 289


>gi|126460684|ref|YP_001056962.1| DNA repair and recombination protein RadA [Pyrobaculum calidifontis
           JCM 11548]
 gi|166218766|sp|A3MXX9|RADA_PYRCJ RecName: Full=DNA repair and recombination protein radA
 gi|126250405|gb|ABO09496.1| DNA repair and recombination protein RadA [Pyrobaculum calidifontis
           JCM 11548]
          Length = 332

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 108/254 (42%), Gaps = 54/254 (21%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA----QSQKTGGTCA- 99
           I  +S+G   LD  LG GG     + E+ G   SGKT L  H +A      +  GG  A 
Sbjct: 98  IRRISTGVRALDELLG-GGIETRAVTEVVGEFGSGKTQLC-HQLAVMVQLPEDRGGLGAK 155

Query: 100 --FVDAEH--------------------ALDSI-YARKLGVDLKNLLISQPDTGEQALEI 136
             ++D E+                    AL++I YAR    D + +L+ Q  +       
Sbjct: 156 AIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSADHQMVLVEQAKS------- 208

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
              L+R   V ++V+DSV A   RAE  G   E+L   Q +L ++ +  L          
Sbjct: 209 ---LIRQHNVALLVVDSVIAHF-RAEFPGR--ENLAERQQKL-NKHIADLLRLADAYDVA 261

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           +V  NQ+  +  V FG+P    GGN L   ++ RL +R     K K++I     R+  + 
Sbjct: 262 VVVTNQVMAQPDVFFGNPLRPAGGNILAHGATYRLWLR-----KSKENI-----RIAKIF 311

Query: 257 NKMASPFKQVEFDI 270
           +    P  +V F I
Sbjct: 312 DSPYHPEGEVSFRI 325


>gi|150403555|ref|YP_001330849.1| DNA repair and recombination protein RadB [Methanococcus
           maripaludis C7]
 gi|166218768|sp|A6VJS2|RADB_METM7 RecName: Full=DNA repair and recombination protein radB
 gi|150034585|gb|ABR66698.1| DNA repair and recombination protein RadB [Methanococcus
           maripaludis C7]
          Length = 215

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 97/207 (46%), Gaps = 19/207 (9%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD--- 118
           G   K  I +IYGP   GKT + + ++  + + G +  ++D E +L     ++L      
Sbjct: 8   GNIEKKTITQIYGPPGVGKTNICILSMLNAIENGKSVVYIDTEGSLSIERIKQLSGKNCE 67

Query: 119 --LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
             LKN++I +P T E+  E  + +     + +I+ID + +L  R E+  ++ E+      
Sbjct: 68  ELLKNIIIYEPSTFEEQSEALEKIFLLENIGLIIIDGIVSLY-RLELCDNINENTK--LN 124

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS--VRLD-- 232
           R++ + +  L     +    ++  NQ++     +        GG  L+++S   ++L+  
Sbjct: 125 RMLGKQISNLLKVARKKNSGILITNQVKDSANGI-----EPAGGRLLEYWSKSIIKLEKA 179

Query: 233 --IRRVGSIKDKDSITGNQTRVKVVKN 257
             +R++   K + +  G   R ++++N
Sbjct: 180 ESVRKLTLEKHRHAKEGENLRFRILQN 206


>gi|154345283|ref|XP_001568583.1| RAD51/dmc1 protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134065920|emb|CAM43702.1| RAD51/dmc1 protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 359

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 101/228 (44%), Gaps = 38/228 (16%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +S+GS  LD  LG GG     I E +G   +GKT +  HT+  + +         G   +
Sbjct: 121 ISTGSTALDQLLGGGGIESRSITEAFGEFRTGKTQIG-HTLCVTSQLPLEMGGGNGKVVY 179

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149
           VD E           A + G+D    L N+L+++  T E    +  M+    A D   ++
Sbjct: 180 VDTEGTFRPERIRPIAERFGLDPNSVLDNILVARAYTHEHQAHLLSMVAAKMAEDQFSLL 239

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQ--ARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206
           V+DS+ AL  R +  G  GE     Q  A+++SQ ++     I+    + V+I NQ+   
Sbjct: 240 VVDSITALF-RVDFSG-RGELAERQQKLAKMLSQLMK-----IAEEFNVAVYITNQVVSD 292

Query: 207 IG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
            G   +    P+   GG+ +   S+ RL +R      RV  I D  S+
Sbjct: 293 PGGASMFVADPKKPVGGHIIAHASTTRLSLRKGRGDQRVCKIFDSPSL 340


>gi|146417037|ref|XP_001484488.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 333

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 108/244 (44%), Gaps = 34/244 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            V++GS  LD  LG GG   G I E++G   +GK+ L  HT+A + +         G C 
Sbjct: 90  CVTTGSKQLDTLLG-GGIETGSITEVFGEFRTGKSQLC-HTLAVTCQLPIDMGGGEGKCL 147

Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDI 148
           ++D E     +     A++ G++    L N+  ++    E   ++ +M   ++      +
Sbjct: 148 YIDTEGTFRPVRLVLIAQRYGLNPDDCLDNVAYARAYNAEHQFQLLNMAAQMMAESRFSL 207

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI- 207
           +++DS+ +L  R +  G  GE L   QA + ++ +R L          +V  NQ+  ++ 
Sbjct: 208 LIVDSIMSLY-RTDYSG-RGE-LSARQAHV-AKYMRTLQRLADEFGIAVVITNQVVAQVD 263

Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               MF   P+   GGN +   S+ RL  R      RV  + D   +  ++    + ++ 
Sbjct: 264 GGASMFNPDPKKPIGGNIIAHSSTTRLSFRKGRAEQRVCKVYDSPCLPESECVFAIYEDG 323

Query: 259 MASP 262
           +  P
Sbjct: 324 IGDP 327


>gi|32250967|gb|AAP74362.1| DNA repair protein Rad51 [Pichia angusta]
          Length = 369

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 109/250 (43%), Gaps = 37/250 (14%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  LG GG   G I E++G   +GK+ L  HT+A + +         G C 
Sbjct: 123 CLTTGSKQLDTLLG-GGIETGAITEVFGEFRTGKSQLC-HTLAVTCQLPIDNGGGEGKCL 180

Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDI 148
           ++D E     I     AR+ G+D    L N+  ++    +  L++      ++      +
Sbjct: 181 YIDTEGTFRPIRLVAIARRFGLDENETLDNVAYARAYNADHQLQLLHQAASMMTESRFSL 240

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMK 206
           +++DS+ AL  R +  G  GE    + AR M  A  +R L          +V  NQ+  +
Sbjct: 241 LIVDSIMALY-RTDYSG-RGE----LSARQMHVAKFMRTLQRLADEFGIAVVITNQVVAQ 294

Query: 207 I--GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKN 257
           +  G +F   P+   GGN +   S+ RL  +      R+  I D   +  ++T   + + 
Sbjct: 295 VDGGAIFNPDPKKPIGGNIVAHSSTTRLYFKKAKGANRICKIYDSPCLAESETVFALGQG 354

Query: 258 KMASPFKQVE 267
            +  P  + E
Sbjct: 355 GVIDPSDETE 364


>gi|190347494|gb|EDK39771.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 333

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 108/244 (44%), Gaps = 34/244 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            V++GS  LD  LG GG   G I E++G   +GK+ L  HT+A + +         G C 
Sbjct: 90  CVTTGSKQLDTLLG-GGIETGSITEVFGEFRTGKSQLC-HTLAVTCQLPIDMGGGEGKCL 147

Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDI 148
           ++D E     +     A++ G++    L N+  ++    E   ++ +M   ++      +
Sbjct: 148 YIDTEGTFRPVRLVSIAQRYGLNPDDCLDNVAYARAYNAEHQFQLLNMAAQMMAESRFSL 207

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI- 207
           +++DS+ +L  R +  G  GE L   QA + ++ +R L          +V  NQ+  ++ 
Sbjct: 208 LIVDSIMSLY-RTDYSG-RGE-LSARQAHV-AKYMRTLQRLADEFGIAVVITNQVVAQVD 263

Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               MF   P+   GGN +   S+ RL  R      RV  + D   +  ++    + ++ 
Sbjct: 264 GGASMFNPDPKKPIGGNIIAHSSTTRLSFRKGRAEQRVCKVYDSPCLPESECVFAIYEDG 323

Query: 259 MASP 262
           +  P
Sbjct: 324 IGDP 327


>gi|320580957|gb|EFW95179.1| DNA repair protein Rad51 [Pichia angusta DL-1]
          Length = 369

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 109/250 (43%), Gaps = 37/250 (14%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  LG GG   G I E++G   +GK+ L  HT+A + +         G C 
Sbjct: 123 CLTTGSKQLDTLLG-GGIETGAITEVFGEFRTGKSQLC-HTLAVTCQLPIDNGGGEGKCL 180

Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDI 148
           ++D E     I     AR+ G+D    L N+  ++    +  L++      ++      +
Sbjct: 181 YIDTEGTFRPIRLVAIARRFGLDENETLDNVAYARAYNADHQLQLLHQAASMMTESRFSL 240

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMK 206
           +++DS+ AL  R +  G  GE    + AR M  A  +R L          +V  NQ+  +
Sbjct: 241 LIVDSIMALY-RTDYSG-RGE----LSARQMHVAKFMRTLQRLADEFGIAVVITNQVVAQ 294

Query: 207 I--GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKN 257
           +  G +F   P+   GGN +   S+ RL  +      R+  I D   +  ++T   + + 
Sbjct: 295 VDGGAIFNPDPKKPIGGNIVAHSSTTRLYFKKAKGANRICKIYDSPCLAESETVFALGQG 354

Query: 258 KMASPFKQVE 267
            +  P  + E
Sbjct: 355 GVIDPSDETE 364


>gi|73670562|ref|YP_306577.1| hypothetical protein Mbar_A3110 [Methanosarcina barkeri str.
           Fusaro]
 gi|72397724|gb|AAZ71997.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 241

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+G  GLD  +  GGFPKG+ + + GP  +GKT L +H + +S K G  C  V   
Sbjct: 1   MESLSTGIEGLDTLMN-GGFPKGKSILVTGPPGAGKTILGIHFLHRSCKEGKKCILVLTR 59

Query: 105 HALDSIY--ARKLGVDLKNLLISQ 126
              + I   +R + +DL+  + S+
Sbjct: 60  ELTEDILSQSRSIHLDLRPFVESR 83


>gi|154305506|ref|XP_001553155.1| hypothetical protein BC1G_08522 [Botryotinia fuckeliana B05.10]
 gi|150853309|gb|EDN28501.1| hypothetical protein BC1G_08522 [Botryotinia fuckeliana B05.10]
          Length = 357

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 97/211 (45%), Gaps = 32/211 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA--LHTIAQSQK----TGGTCAFV 101
           +S+GS  LD  L  GGF    I E+YG    GKT LA  L  IAQ  K      G  A++
Sbjct: 120 ISTGSKQLDACLN-GGFQTMSISEVYGEFRCGKTQLAHTLAVIAQLPKEMGGAEGKVAYI 178

Query: 102 DAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---IIV 150
           D E        S  A + GVD    L+N++ ++    EQ  E+ + L ++ A D   +++
Sbjct: 179 DTEGTFRPERISEIAERFGVDPDQALENIVYARAHNTEQ--ELLEGLAQNFATDEYRLLI 236

Query: 151 IDSVAALTPRAEI--EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IDS+ AL  R++    G++ E    + A      LRK T        ++   NQ+    G
Sbjct: 237 IDSIMALY-RSDFIGRGELSERQGALNA-----FLRKATQMAEEFNLVVFMTNQVMSDPG 290

Query: 209 --VMFGSPE--TTTGGNALKFYSSVRLDIRR 235
              +F   +     GG+ L   S+ R+ +R+
Sbjct: 291 ASALFAGADGRKPAGGHILAHASTTRVLLRK 321


>gi|70606517|ref|YP_255387.1| DNA repair and recombination protein RadA [Sulfolobus
           acidocaldarius DSM 639]
 gi|76363310|sp|Q4JAT5|RADA_SULAC RecName: Full=DNA repair and recombination protein radA
 gi|68567165|gb|AAY80094.1| DNA recombination protein RadA [Sulfolobus acidocaldarius DSM 639]
          Length = 321

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 94/207 (45%), Gaps = 25/207 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS----QKTGG---TCAF 100
           +++GS  LD  LG GG     + E +G   SGKT L  H I+ S    Q+ GG      +
Sbjct: 86  ITTGSQALDGLLG-GGIETRTMTEFFGEFGSGKTQLC-HQISISVQLPQEKGGLNGKAVY 143

Query: 101 VDAEHAL--DSIYARKLGVDLK------NLLISQPDTGEQALEITD----MLVRSGAVDI 148
           +D E     + I A   G  L+      N+   +    +  + I D    ++ +  A+ +
Sbjct: 144 IDTEGTFRWERIEAMAKGAGLESDIAMNNIYYMRAINSDHQMAIVDDLQELITKDPAIKL 203

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DS+ +   RAE  G   E+L   Q +L ++ L +L          ++  NQ+  +  
Sbjct: 204 IIVDSITSHF-RAEYPGR--ENLAVRQQKL-NKHLHQLVRLAEMYDIAVIITNQVMARPD 259

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRR 235
           + +G P T  GG+ L     +R+ +++
Sbjct: 260 MFYGDPTTAVGGHTLYHVPGIRVQLKK 286


>gi|254166602|ref|ZP_04873456.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei
           T469]
 gi|254168555|ref|ZP_04875399.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei
           T469]
 gi|289596107|ref|YP_003482803.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei
           T469]
 gi|197622610|gb|EDY35181.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei
           T469]
 gi|197624212|gb|EDY36773.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei
           T469]
 gi|289533894|gb|ADD08241.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei
           T469]
          Length = 324

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 102/234 (43%), Gaps = 32/234 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----LALHTIAQSQKTG--GTCAFV 101
           +++GS   D  LG GG     I E +G   SGKT     LA++      K G  G   ++
Sbjct: 92  LTTGSSDFDTLLG-GGLETQAITEFFGEFGSGKTQIMHQLAVNVQLPKDKGGLEGHAVYI 150

Query: 102 DAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDIIV 150
           D E+          A  L +D    LK + +++       + + D    L +   V +++
Sbjct: 151 DTENTFRPERIKQMAEALELDPVEVLKKIHVARAFNSNHQILLVDKAMELAKEYPVRLLI 210

Query: 151 IDSVAALTPRAEI--EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +DS+ A   RAE    G + E     + +L+++ +  L      +  ++   NQ+    G
Sbjct: 211 VDSLTAHF-RAEYVGRGSLAE-----RQQLLNKHMHDLLKFADLNNAVVAVTNQVSSNPG 264

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVK 256
           +MFG P    GGN +   ++ R+ +R      R+  + D  ++   +  +K+VK
Sbjct: 265 MMFGDPTQPIGGNIVGHTATYRIYLRKSRGNKRIARLIDSPALPDGEVVIKIVK 318


>gi|149191858|ref|ZP_01870093.1| hypothetical protein VSAK1_26830 [Vibrio shilonii AK1]
 gi|148834293|gb|EDL51295.1| hypothetical protein VSAK1_26830 [Vibrio shilonii AK1]
          Length = 231

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 8/121 (6%)

Query: 32  IMQLGSQGSIFEG------IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
           I +L S+  I++G      IE  S+G   LD  LG GGFP   +++I  P   G+  L L
Sbjct: 5   ISELQSKQLIWKGARAESFIECHSTGFAELDRRLG-GGFPTSGVIDIQSPLGIGELRL-L 62

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
              AQ+Q T     F++    L + Y    G+D   +L+  P++G+ AL   +  ++SGA
Sbjct: 63  MPYAQAQTTERLLVFINPPGYLCAEYLYAQGIDPAKILLIYPESGKHALWAAEQCLKSGA 122

Query: 146 V 146
            
Sbjct: 123 C 123


>gi|20094878|ref|NP_614725.1| DNA repair and recombination protein RadA [Methanopyrus kandleri
           AV19]
 gi|19888111|gb|AAM02655.1| RadA recombinase [Methanopyrus kandleri AV19]
          Length = 317

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 92/212 (43%), Gaps = 33/212 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGG---TCAFV 101
           +++GS  LD  LG GG P G + E  GP  SGK+ +        Q   + GG      F+
Sbjct: 77  ITTGSSALDEILG-GGVPCGELTEFAGPFGSGKSQIVFQLCVNVQLPEEEGGLESKAIFI 135

Query: 102 DAEHALDS----IYARKLGVD----LKNLLISQPDTGEQ---ALEITDMLVRSGAVDIIV 150
           D E  +        A  LG+D    L+N+ ++Q  + E+   A E    L     + ++V
Sbjct: 136 DTEGTVSPGRIKGMAEALGLDPGEALRNVFVTQVRSVEEQMRAAEEAHKLCEREDIGLVV 195

Query: 151 IDSVAALTPRAEIE--GDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMK 206
           IDS+ A   RAE    GD+ E     QARLM     LR L          +VF NQ+ + 
Sbjct: 196 IDSLTAHF-RAEYSKLGDVSER----QARLMKHVDQLRNLAMD---HDVAVVFTNQVHVD 247

Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIRR 235
           I       G      GG  +   ++ R+ +RR
Sbjct: 248 IEAATKGKGRRYEPVGGTIVAHQATHRIMLRR 279


>gi|124027840|ref|YP_001013160.1| DNA repair and recombination protein RadA [Hyperthermus butylicus
           DSM 5456]
 gi|123978534|gb|ABM80815.1| DNA repair and recombination protein [Hyperthermus butylicus DSM
           5456]
          Length = 323

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 93/212 (43%), Gaps = 31/212 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA------------QSQKTG 95
           +++GS  LD  LG GG     I E +G   SGKT +  H +A             +Q   
Sbjct: 84  ITTGSRNLDDLLG-GGIETKTITEFFGEFGSGKTQIC-HQLAVNVQLPIEKGGLSTQDRV 141

Query: 96  GTCAFVDAE-----HALDSIYARKLGVD----LKNLLISQPDTGEQALEITDML---VRS 143
               ++D E       L+++ A++ G+D    + N+   +    +  + I D L   V  
Sbjct: 142 AKAVYIDTEGTFRWERLENM-AKRWGLDPDEVMSNIFYIRAINSDHQMAIVDELFNIVPK 200

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             + ++++DSV +   RAE  G   E+L   Q +L ++ L +L          +V  NQ+
Sbjct: 201 ENIKLVIVDSVTSHF-RAEYPGR--ENLAARQQKL-NRHLHQLAKLAEVYDLAVVITNQV 256

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
             +  V +G P    GG+ L     VR+ +R+
Sbjct: 257 MARPDVFYGDPTQAVGGHVLYHAPGVRVQLRK 288


>gi|70606365|ref|YP_255235.1| hypothetical protein Saci_0546 [Sulfolobus acidocaldarius DSM 639]
 gi|68567013|gb|AAY79942.1| conserved protein [Sulfolobus acidocaldarius DSM 639]
          Length = 261

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY--ARKLGVDL 119
           GG P+G  V + G   +GKT  +LH +AQ  K G  C +V  E + DSI   A++ G D 
Sbjct: 17  GGIPQGFFVALTGEPGTGKTIFSLHFVAQGLKEGNPCVYVTTEESRDSIVKQAKQFGWDF 76

Query: 120 KNLL 123
           +  L
Sbjct: 77  EEHL 80


>gi|6683006|dbj|BAA88984.1| RadA [Pyrobaculum islandicum]
          Length = 315

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 110/244 (45%), Gaps = 34/244 (13%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA----QSQKTGGTCA- 99
           I  +S+G   LD  LG GG     + E+ G   SGKT L  H +A     +++ GG  A 
Sbjct: 81  IRRISTGVRALDELLG-GGIETRAVTEVAGEFGSGKTQLC-HQLAVMVQLAEERGGLGAK 138

Query: 100 --FVDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAV 146
             ++D E+          A+  G+D    L N+  ++  + +  + + D    ++R   V
Sbjct: 139 AIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSSDHQMILVDQAKSIIRQHNV 198

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++++DSV A   R+E  G   E+L   Q +L ++ +  L          +V  NQ+  +
Sbjct: 199 ALLIVDSVIAHF-RSEFPGR--ENLAERQQKL-NKHVADLLRLADAYDVAVVITNQVMAQ 254

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
             V FG+P    GGN L   ++ RL +R     K K++I     R+  + +    P  +V
Sbjct: 255 PDVFFGNPLRPAGGNILAHGATYRLWLR-----KSKENI-----RIAKIFDSPYHPEGEV 304

Query: 267 EFDI 270
            F I
Sbjct: 305 SFRI 308


>gi|240102587|ref|YP_002958896.1| RecA family AAA ATPase [Thermococcus gammatolerans EJ3]
 gi|239910141|gb|ACS33032.1| RecA family AAA ATPase [Thermococcus gammatolerans EJ3]
          Length = 449

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + +G    D  LG GGF KG I  I GP  SGKT  AL   +   K G    ++  E 
Sbjct: 237 ERIKTGIPKFDELLG-GGFYKGSINLIAGPTGSGKTIFALTIASNMAKQGFRVLYMTFEE 295

Query: 106 ALDSIY--ARKLGV--DLKNL-LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           AL ++    + LG+  D K + LI +  T  Q   +   L+R  + +I+ IDS++A+   
Sbjct: 296 ALGALLGTTKNLGLDGDFKVISLIPEAMTPIQYYALIKRLLRENSSEILFIDSISAMQSH 355

Query: 161 AEIE 164
            E E
Sbjct: 356 MEEE 359



 Score = 44.7 bits (104), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 18/128 (14%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E++ +G  GLD AL  GGF +G  + I G   +GKT LA+H +  + K G   A++   
Sbjct: 1   MELIPTGIPGLDKALS-GGFSRGTSILIAGNPGTGKTHLAVHVLFNNMKKGLKGAYISFA 59

Query: 105 HALDSIY------------ARKLGVDLKNLLISQPDTGEQALEITDMLVR---SGAVDII 149
                 Y            A K GV     +++ P   E+  +  D L++       DII
Sbjct: 60  ETKRQFYQNAMESGLNFEEAEKKGVFKFYDMLTMPK--EEMKDFLDFLIQDLVEWKPDII 117

Query: 150 VIDSVAAL 157
           V DS+  L
Sbjct: 118 VFDSITVL 125


>gi|145592504|ref|YP_001154506.1| DNA repair and recombination protein RadA [Pyrobaculum arsenaticum
           DSM 13514]
 gi|166218765|sp|A4WN87|RADA_PYRAR RecName: Full=DNA repair and recombination protein radA
 gi|145284272|gb|ABP51854.1| DNA repair and recombination protein RadA [Pyrobaculum arsenaticum
           DSM 13514]
          Length = 333

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 95/209 (45%), Gaps = 24/209 (11%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA----QSQKTGGTCA- 99
           I  +S+G   LD  LG GG     + E+ G   SGKT L  H +A      ++ GG  A 
Sbjct: 99  IRRISTGVRSLDELLG-GGIETRAVTEVVGEFGSGKTQLC-HQLAVMVQLPEERGGLGAK 156

Query: 100 --FVDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQAL---EITDMLVRSGAV 146
             ++D E+          AR  G+D    L N+  ++  + +  +   E    +V+   V
Sbjct: 157 AIYIDTENTFRPERIMQMARARGLDPDQALNNIFYARAYSSDHQMILVEHAKSIVKQHNV 216

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            +IV+DSV A   R+E  G   E+L   Q +L ++ +  L          +V  NQ+  +
Sbjct: 217 ALIVVDSVIAHF-RSEFPGR--ENLAERQQKL-NKHVADLLRLADAYDVAVVITNQVMAQ 272

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRR 235
             V FG+P    GGN L   ++ RL +R+
Sbjct: 273 PDVFFGNPLRPAGGNILAHGATYRLWLRK 301


>gi|71659624|ref|XP_821533.1| meiotic recombination protein DMC1 [Trypanosoma cruzi strain CL
           Brener]
 gi|70886915|gb|EAN99682.1| meiotic recombination protein DMC1, putative [Trypanosoma cruzi]
          Length = 351

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 104/229 (45%), Gaps = 41/229 (17%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  LD  LG GG     I E +G   +GKT +A HT+  + +         G   +
Sbjct: 114 MTTGSTALDQLLG-GGIESMSITEAFGEFRTGKTQIA-HTLCVTCQLPTSMGGGNGKVIY 171

Query: 101 VDAEHA-----LDSIYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---I 148
           VD E       +  I AR  G+D    L N+L+++  T E  + +  M+    A D   +
Sbjct: 172 VDTESTFRPERIKPIAAR-FGLDADAVLNNILVARAYTHEHQMHLLSMVAAKMAEDQFGL 230

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQ--ARLMSQALRKLTSSISRSKCILVFI-NQMRM 205
           +V+DS+ AL  R +  G  GE     Q  A++MS  L KL    +    + V+I NQ+  
Sbjct: 231 LVVDSITALF-RVDFSG-RGELAERQQKLAKMMSH-LIKLAEEFN----VAVYITNQVVA 283

Query: 206 KIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
             G   +    P+   GG+ L   S+ RL +R      RV  I D  S+
Sbjct: 284 DPGGASMFVADPKKPVGGHILAHASTTRLSLRKGRGDQRVCKIYDSPSL 332


>gi|159904665|ref|YP_001548327.1| DNA repair and recombination protein RadB [Methanococcus
           maripaludis C6]
 gi|159886158|gb|ABX01095.1| DNA repair and recombination protein RadB [Methanococcus
           maripaludis C6]
          Length = 215

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 99/209 (47%), Gaps = 23/209 (11%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL---GVD 118
           G   K  I +IYGP   GKT + + ++ ++ + G    ++D E +L     ++L     D
Sbjct: 8   GNIEKKTITQIYGPPGVGKTNICILSMLKAIENGKNVVYIDTEGSLSIERIKQLSGKNCD 67

Query: 119 --LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES--LPGM 174
             LKN++I +P + E+  E  + +     + +I+ID + +L  R E+  ++ E+  L  M
Sbjct: 68  ELLKNIIIYEPSSFEEQSEALEKIFLLENIGLIIIDGIVSLY-RLELCDNINENTKLNRM 126

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
             + +S  L+     ++R K   + I   ++K  V    P    GG  L+++S   + I 
Sbjct: 127 LGKQISNILK-----VARMKNSGILITN-QVKDSVKGIEP---AGGRLLEYWSKSIVKIE 177

Query: 235 RVGSI------KDKDSITGNQTRVKVVKN 257
           +  SI      K + +  G   + ++++N
Sbjct: 178 KTESIRKLTLEKHRHAKEGENLKFRILQN 206


>gi|71663769|ref|XP_818873.1| meiotic recombination protein DMC1 [Trypanosoma cruzi strain CL
           Brener]
 gi|70884148|gb|EAN97022.1| meiotic recombination protein DMC1, putative [Trypanosoma cruzi]
          Length = 351

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 104/229 (45%), Gaps = 41/229 (17%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  LD  LG GG     I E +G   +GKT +A HT+  + +         G   +
Sbjct: 114 MTTGSTALDQLLG-GGIESMSITEAFGEFRTGKTQIA-HTLCVTCQLPTSMGGGNGKVIY 171

Query: 101 VDAEHA-----LDSIYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---I 148
           VD E       +  I AR  G+D    L N+L+++  T E  + +  M+    A D   +
Sbjct: 172 VDTESTFRPERIKPIAAR-FGLDADAVLNNILVARAYTHEHQMHLLSMVAAKMAEDQFGL 230

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQ--ARLMSQALRKLTSSISRSKCILVFI-NQMRM 205
           +V+DS+ AL  R +  G  GE     Q  A++MS  L KL    +    + V+I NQ+  
Sbjct: 231 LVVDSITALF-RVDFSG-RGELAERQQKLAKMMSH-LIKLAEEFN----VAVYITNQVVA 283

Query: 206 KIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
             G   +    P+   GG+ L   S+ RL +R      RV  I D  S+
Sbjct: 284 DPGGASMFVADPKKPVGGHILAHASTTRLSLRKGRGDQRVCKIYDSPSL 332


>gi|126180099|ref|YP_001048064.1| DNA repair and recombination protein RadB [Methanoculleus
           marisnigri JR1]
 gi|166218769|sp|A3CXI2|RADB_METMJ RecName: Full=DNA repair and recombination protein radB
 gi|125862893|gb|ABN58082.1| DNA repair and recombination protein RadB [Methanoculleus
           marisnigri JR1]
          Length = 224

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 77/169 (45%), Gaps = 17/169 (10%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--- 104
           VS+GS   D  LG GG  +  I +IYG  +SGK+TL L     + + G +  ++D E   
Sbjct: 6   VSTGSTAFDDLLG-GGLERRAITQIYGEPASGKSTLCLMAAVATLRAGNSVVYIDTEGFS 64

Query: 105 -HALDSIYARKLGVDLKNLLISQP-DTGEQALEITDM--LVRSG--AVDIIVIDSVAALT 158
                 I     G     L + +P D  +Q   I D   L+++G   V ++V+DS  AL 
Sbjct: 65  VERFTQIAGENAGTLADRLYLFEPLDFAQQGTMIADAEGLLKNGHAPVGLLVMDSATALY 124

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
            R E+  D+G        R +S  + KL     +    ++  NQ+ M +
Sbjct: 125 -RTEL--DLGRE----AIRKLSHHMIKLLGLAKKYDIPVLITNQIYMDV 166


>gi|327311698|ref|YP_004338595.1| DNA repair and recombination protein RadA [Thermoproteus uzoniensis
           768-20]
 gi|326948177|gb|AEA13283.1| DNA repair and recombination protein RadA [Thermoproteus uzoniensis
           768-20]
          Length = 337

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 109/244 (44%), Gaps = 34/244 (13%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA----QSQKTGGTCA- 99
           I+ +S+G   LD  L  GG   G + E+ G   +GKT    H +A      +  GG  A 
Sbjct: 103 IKRISTGVRSLDELLN-GGVETGAVTEVAGEFGAGKTQFC-HQLAVMVQLPEDRGGLNAK 160

Query: 100 --FVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQAL---EITDMLVRSGAV 146
             ++D E+       +  AR  G+D    LKN+  ++  + +  +   E    +++   V
Sbjct: 161 AIYIDTENTFRPERITQMARARGLDPDQALKNIYYARAYSSDHQMILVEQARRIIKQDNV 220

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++V+DS+ A   RAE  G   E+L   Q +L ++ +  L          +V  NQ+  +
Sbjct: 221 KLLVVDSIVAHF-RAEFPGR--ENLAERQQKL-NKHIADLLKIADAYDVAVVVTNQVMAQ 276

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
             V FG+P    GGN L   ++ R+ +R     K K++I     R+  + +    P ++ 
Sbjct: 277 PDVFFGNPLRPAGGNVLAHGATYRIWLR-----KSKENI-----RIAKIFDSPYHPEREA 326

Query: 267 EFDI 270
            F I
Sbjct: 327 TFKI 330


>gi|15072785|emb|CAC47959.1| RecA-like protein [Sulfolobus acidocaldarius]
          Length = 198

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY--ARKLGVDL 119
           GG P+G  V + G   +GKT  +LH +AQ  K G  C +V  E + DSI   A++ G D 
Sbjct: 17  GGIPQGFFVALTGEPGTGKTIFSLHFVAQGLKEGNPCVYVTTEESRDSIVKQAKQFGWDF 76

Query: 120 KNLL 123
           +  L
Sbjct: 77  EEHL 80


>gi|238694903|ref|YP_002922097.1| UvsX [Enterobacteria phage JSE]
 gi|220029039|gb|ACL77974.1| UvsX [Enterobacteria phage JSE]
          Length = 356

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 104/251 (41%), Gaps = 22/251 (8%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIA--QSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           GF  G I    GP    K+ + L  ++    Q     C F D+E  +   Y   +GVD  
Sbjct: 49  GFQSGLIF-FAGPSKHFKSNMGLTCVSAYMKQNPDAACLFFDSEFGITPAYLESMGVDPD 107

Query: 121 NLL-ISQPDTGEQALEITDMLVRSGAVD--IIVIDSVAALTPRAEIEGDMGE-SLPGM-Q 175
            ++ +   +  E   EI + L +    D  II IDS+  L  + E+E  + E S   M +
Sbjct: 108 RVVHVPIKNIEELKFEIMNQLEQITREDKVIIFIDSIGNLASKKEVEDAINEKSAQDMTR 167

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           A+ +    R +T  ++ +    + IN    +   MF     + G  A+  YS+  + I  
Sbjct: 168 AKALKGLFRMVTPYLTMNDIPCIAINHT-YETQEMFSKTVMSGGTGAM--YSANEVFIIG 224

Query: 236 VGSIKDKDSITG-----NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK-A 289
               K+   ITG     N  + + VK K   P       + +  GI  +  L++L V+  
Sbjct: 225 RRQQKEGTEITGYDFILNAEKSRTVKEKSKFP-----ISVTFSGGIDPYSGLLELAVELG 279

Query: 290 SIVDKSGAWFS 300
            +V  S  W+S
Sbjct: 280 WVVKPSNGWYS 290


>gi|1378036|gb|AAC44123.1| RadA [Sulfolobus solfataricus]
          Length = 324

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 96/210 (45%), Gaps = 25/210 (11%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-----QSQKTG--GT 97
           ++ +S+GS  LD  L  GG     + E +G   SGKT L  H ++       +K G  G 
Sbjct: 86  VKKISTGSQALD-GLLAGGIETRTMTEFFGEFGSGKTQLC-HQLSVNVQLPPEKGGLSGK 143

Query: 98  CAFVDAEHALD----SIYARKLGVDLKNLL-----ISQPDTGEQALEITDM---LVRSGA 145
             ++D E           A+ LG+D+ N++     I   +T  Q   + D+   + +  +
Sbjct: 144 AVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPS 203

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           + +IV+DSV +   RAE  G   E L   Q +L ++ L +LT         ++  NQ+  
Sbjct: 204 IKLIVVDSVTSHF-RAEYPGR--EILAVRQQKL-NKHLHQLTRLAEVYDIAVIITNQVMA 259

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           +  + +G P    GG+ L     +R+ +++
Sbjct: 260 RPDMFYGDPTVAVGGHTLYHVPGIRIQLKK 289


>gi|304315504|ref|YP_003850651.1| DNA repair and recombination protein RadA [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588963|gb|ADL59338.1| DNA repair and recombination protein RadA [Methanothermobacter
           marburgensis str. Marburg]
          Length = 311

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 100/206 (48%), Gaps = 23/206 (11%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH---TIAQSQKTGGTCA---FV 101
           +++GS  LD  +G GG     I E++G   SGK+ L+     T+   ++ GG  A   F+
Sbjct: 79  ITTGSKALDELIG-GGIETQAITEVFGEFGSGKSQLSHELAVTVQLPEERGGLDAEAVFI 137

Query: 102 DAEHALD----SIYARKLGVDLKNLL----ISQP-DTGEQAL--EITDMLVRSGA-VDII 149
           D E+          A    +DL+ +L    I++  ++  Q L  E  + L++ G  + ++
Sbjct: 138 DTENTFRPERIEQIANAFELDLEEVLNKIHIARAFNSSHQILMAEKVNELIQEGKNIRLV 197

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           ++DS+ A   RAE  G   E+L   Q +L +Q L  L +  +     +   NQ++ +   
Sbjct: 198 IVDSLTAHF-RAEYVGR--EALATRQQKL-NQHLHTLQNIANTYNAAVFVTNQVQARPDA 253

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRR 235
            FGSP    GG+ L   ++ RL +++
Sbjct: 254 FFGSPTKAIGGHVLGHAATYRLWLKK 279


>gi|118577121|ref|YP_876864.1| RecA/RadA recombinase related protein [Cenarchaeum symbiosum A]
 gi|118195642|gb|ABK78560.1| RecA/RadA recombinase related protein [Cenarchaeum symbiosum A]
          Length = 218

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 88/180 (48%), Gaps = 21/180 (11%)

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD------AEHALDSIYARKLGVD--LK 120
           I +I+GP +SGK+ +A    A +   GG   F D       E  L  + +R LG +  L 
Sbjct: 22  ITDIFGPPASGKSQIAFEICAGALAEGGRVIFHDTSGTLRPERILQILRSRGLGGEGLLD 81

Query: 121 NLLISQ-PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
            +++S+  +TGEQA  ++ +        ++V+D+   L    E  G    SLP  + RL+
Sbjct: 82  RMIVSRMTNTGEQAAGLSQI---GPEASLVVVDNATELF-SFEYAGRE-RSLP--RNRLL 134

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
            Q +R+L+ +    +  ++  N +R   G   G  E     +A++ +  VR+ +RR+G +
Sbjct: 135 MQYMRRLSGAAVALRVPVIVTNTVRFIEG---GEAENLA--SAMRPFPHVRIHLRRMGGV 189


>gi|302348270|ref|YP_003815908.1| DNA repair and recombination protein radA [Acidilobus
           saccharovorans 345-15]
 gi|302328682|gb|ADL18877.1| DNA repair and recombination protein radA [Acidilobus
           saccharovorans 345-15]
          Length = 326

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 91/205 (44%), Gaps = 22/205 (10%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----LALHTIAQSQKTG--GTCAFV 101
           +++GS  LD  LG GG    +I E +G   +GKT     L+++      K G  G   ++
Sbjct: 91  ITTGSKALDDLLG-GGIETKQITEFFGEFGTGKTQICHQLSVNVQLPEDKGGLNGKAVYI 149

Query: 102 DAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVDIIV 150
           D E           AR LG+D    + N+   +       + I D L   +    + ++V
Sbjct: 150 DTEGTFRWERIEQMARGLGLDPDKVMDNIYWIRAINSHHQMAIVDQLFDMLDKDNIRLVV 209

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DS+ +   RAE  G   E+L   Q +L+++ L +L          +V  NQ+  +  V 
Sbjct: 210 VDSLTSHF-RAEFPGR--ENLAARQ-QLLNRHLHQLMRLAEVYDVAVVVTNQVMARPDVF 265

Query: 211 FGSPETTTGGNALKFYSSVRLDIRR 235
           +G P    GGN +     +R+ +++
Sbjct: 266 YGDPTAAVGGNVVAHAPGIRVQLKK 290


>gi|154289413|ref|XP_001545330.1| hypothetical protein BC1G_16151 [Botryotinia fuckeliana B05.10]
 gi|150849393|gb|EDN24586.1| hypothetical protein BC1G_16151 [Botryotinia fuckeliana B05.10]
          Length = 383

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 16/135 (11%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKG-AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           M  V  ++AL+   S   R    G +++ L  Q    + ++V +S      +    GG P
Sbjct: 1   MPTVSAAQALQDLESSPTRCISTGLSLLDLALQNK--DPLQVSTS------VDHNHGGIP 52

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +G++ EIYGP   GKTTL +H  A+         +VDA H +        G     +L  
Sbjct: 53  RGKVTEIYGPPGVGKTTLGMHLAARVLHQNENVVWVDASHPIS-------GPRFSQILQE 105

Query: 126 QPDTGEQALEITDML 140
            P T  + L    +L
Sbjct: 106 SPSTSPEPLNNDTLL 120


>gi|212224798|ref|YP_002308034.1| DNA repair and recombination protein RadA [Thermococcus onnurineus
           NA1]
 gi|212009755|gb|ACJ17137.1| radA DNA repair protein rad51 [Thermococcus onnurineus NA1]
          Length = 353

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 106/212 (50%), Gaps = 31/212 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-----QSQKTG--GTCAF 100
           +S+GS  LD  +G GG     I E++G   SGKT LA HT+A       ++ G  G+  +
Sbjct: 117 ISTGSKSLDKLVG-GGIETQAITEVFGEFGSGKTQLA-HTLAVMVQLPPEEGGLQGSVIW 174

Query: 101 VDAEHALDSIYARKL----GVD----LKNLLISQP-DTGEQAL--EITDMLVRSGA---- 145
           +D E+       R++    G+D    LKN+ +++  ++  Q L  E  + +++  A    
Sbjct: 175 IDTENTFRPERIRQIAENRGLDPEEVLKNIYVARAFNSNHQMLLVERAEEIIKEKAETER 234

Query: 146 -VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQM 203
            V +IVIDS+ A   R+E    +G      + + +++ L  L   I+    I VF+ NQ+
Sbjct: 235 PVKLIVIDSLMAHF-RSEY---VGRGTLAERQQKLAKHLADL-HRIADLYDIAVFVTNQV 289

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           + K    FG P    GG+ L   +++R+ +R+
Sbjct: 290 QAKPDAFFGDPTRPVGGHILAHSATLRIYLRK 321


>gi|322819187|gb|EFZ26388.1| meiotic recombination protein DMC1, putative [Trypanosoma cruzi]
          Length = 351

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 104/229 (45%), Gaps = 41/229 (17%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  LD  LG GG     I E +G   +GKT +A HT+  + +         G   +
Sbjct: 114 MTTGSTALDQLLG-GGIESMSITEAFGEFRTGKTQIA-HTLCVTCQLPTSMGGGNGKVIY 171

Query: 101 VDAEHA-----LDSIYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---I 148
           VD E       +  I AR  G+D    L N+L+++  T E  + +  M+    A D   +
Sbjct: 172 VDTESTFRPERIKPIAAR-FGLDADAVLNNILVARAYTHEHQMHLLSMVAAKMAEDQFGL 230

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQ--ARLMSQALRKLTSSISRSKCILVFI-NQMRM 205
           +V+DS+ AL  R +  G  GE     Q  A++MS  L KL    +    + V+I NQ+  
Sbjct: 231 LVVDSITALF-RVDFSG-RGELAERQQKLAKMMSH-LIKLAEEFN----VAVYITNQVVA 283

Query: 206 KIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
             G   +    P+   GG+ L   S+ RL +R      R+  I D  S+
Sbjct: 284 DPGGASMFVADPKKPVGGHILAHASTTRLSLRKGRGDQRICKIYDSPSL 332


>gi|14590064|ref|NP_142128.1| DNA repair and recombination protein RadB [Pyrococcus horikoshii
           OT3]
 gi|6225912|sp|O57859|RADB_PYRHO RecName: Full=DNA repair and recombination protein radB
 gi|3256505|dbj|BAA29188.1| 228aa long hypothetical DNA repair protein [Pyrococcus horikoshii
           OT3]
          Length = 228

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 24/167 (14%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           V+++G  GLD  LG GG  +  I+++YGP ++GKTT A+     ++   G  A+VD E  
Sbjct: 12  VLTTGVKGLDELLG-GGVARRVILQVYGPFATGKTTFAMQVGLLNE---GKVAYVDTEGG 67

Query: 107 LD----SIYARKLGVD----LKNLLISQP-DTGEQALEITDM-LVRSGAVDIIVIDSVAA 156
                 +  AR  G+D    L   +I +P D  EQ   I+ +  +      ++V+DS+ A
Sbjct: 68  FSPERLAQMARSRGLDPEKALSKFIIFEPMDLNEQRRVISKLKTIVDEKFSLVVVDSLTA 127

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
              RAE   + GE         +++ L+ L     R    ++ INQ+
Sbjct: 128 -HYRAEGSKNYGE---------LAKQLQVLQWLARRKNVAVIVINQV 164


>gi|86158035|ref|YP_464820.1| hypothetical protein Adeh_1610 [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774546|gb|ABC81383.1| hypothetical protein Adeh_1610 [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 226

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            V SG   +D AL  GGFP+G + E+ G  +SGKT +AL  +A+        A+VD    
Sbjct: 31  CVPSGLAEVDAALPGGGFPRGALCELAGGPASGKTAVALSLLARLGPE-DLSAWVDVRGD 89

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQA 133
           L    A   GVDL  LL+ +P +G  A
Sbjct: 90  LYPPAAAARGVDLARLLVVRPGSGTGA 116


>gi|220917438|ref|YP_002492742.1| hypothetical protein A2cp1_2338 [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219955292|gb|ACL65676.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 228

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            V SG   +D AL  GGFP+G + E+ G  +SGKT +AL  +A         A+VD    
Sbjct: 31  CVPSGLPEVDAALPGGGFPRGALCELAGGPASGKTAVALSLVAGLGPE-DLSAWVDVRGD 89

Query: 107 LDSIYARKLGVDLKNLLISQPDTG 130
           L    A   GVDL  LL+ +P TG
Sbjct: 90  LYPPAAAARGVDLARLLVVRPATG 113


>gi|242389898|dbj|BAH80458.1| putative DMC1 protein [Lentinula edodes]
          Length = 346

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 97/212 (45%), Gaps = 29/212 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCA 99
           V+S+GS  +D  LG GG     I E+YG   +GKT LA HT++ + +         G  A
Sbjct: 108 VISTGSKSVDAILG-GGIMSQSISEVYGEFRTGKTQLA-HTMSVAAQLPPDLGGASGKVA 165

Query: 100 FVDAEHAL--DSI--YARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---- 147
           ++D E     D I   A + GVD    L+N+L ++    E  +E+ +      A D    
Sbjct: 166 YIDTEGTFRPDRIKAIADRFGVDGNMALENILYARAFNSEHQMELINECSLRFAEDKDFR 225

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++++DS+ AL  R +  G     L   Q +L +Q L KLT         ++  NQ++   
Sbjct: 226 LLIVDSIMALF-RVDYSGR--GKLSERQQKL-AQMLSKLTKLSEEYNICVLLTNQVQSDP 281

Query: 208 GVMF----GSPETTTGGNALKFYSSVRLDIRR 235
           G       G      GG+ L   S+ R+ +R+
Sbjct: 282 GATMTFVAGGALKPIGGHILSHASATRMFLRK 313


>gi|116754236|ref|YP_843354.1| DNA repair and recombination protein RadB [Methanosaeta thermophila
           PT]
 gi|116665687|gb|ABK14714.1| DNA repair and recombination protein RadB [Methanosaeta thermophila
           PT]
          Length = 221

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 26/221 (11%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+ + SG   +D  LG GGF  G I +IYG   +GKT + +    Q+ + G    F+D E
Sbjct: 2   IKRIPSGCQSIDDLLG-GGFEAGIITQIYGESGTGKTNIVIQLSVQAVRLGSRVIFIDTE 60

Query: 105 HALDSIYARKLGVDLK----NLLISQPDTGEQ---ALEITDMLVRSGAVDIIVIDSVAAL 157
                 + +  G + K     +++ QP + EQ   A+     +V  G   ++V+DS  +L
Sbjct: 61  GFSPDRFVQIAGENAKEIASKIVVFQPLSLEQQHMAIRDASRIVGQG-FGLVVLDSATSL 119

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
             RA +E +    +     R ++  L +L     R    +V  NQ+ M +      P   
Sbjct: 120 Y-RAALEANDNRQI----KRSLTAQLSELQEIARRHSIPVVVTNQVYMDVETGILRP--- 171

Query: 218 TGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
            GG +++      L + R+    DK      + R++VVK++
Sbjct: 172 VGGTSMEHLCKAILALERL----DK-----GRRRMRVVKHR 203


>gi|326483933|gb|EGE07943.1| Rad51 family protein [Trichophyton equinum CBS 127.97]
          Length = 356

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 107/237 (45%), Gaps = 37/237 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IA 89
           M+LG Q    + +  +S+GS   D  LG GGF    I E+YG    GKT L+ HT   IA
Sbjct: 105 MELGHQR---KRVVKISTGSKQFDTILG-GGFQSMSISEVYGEFRCGKTQLS-HTMSVIA 159

Query: 90  QSQK----TGGTCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEIT 137
           Q  K      G  A++D E        +  A + GVD    L+N+  ++    E  LE+ 
Sbjct: 160 QLPKDLGGAEGKAAYIDTEGTFRPERIAQIAERFGVDPDSALENISYARALNSEHQLELL 219

Query: 138 DMLVR---SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           + L +   SG   +++IDS+     R +  G  GE L   Q +L +Q L KL        
Sbjct: 220 NTLAKEFASGEYRLLIIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFN 275

Query: 195 CILVFINQMRMKIG--VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241
             ++  NQ++   G   +F   +     GG+ L   S+ R+ +R      RV  I+D
Sbjct: 276 VCVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTRVLLRKGRGDERVAKIQD 332


>gi|302698277|ref|XP_003038817.1| RecA family ATPase [Schizophyllum commune H4-8]
 gi|300112514|gb|EFJ03915.1| RecA family ATPase [Schizophyllum commune H4-8]
          Length = 348

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 98/214 (45%), Gaps = 29/214 (13%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQK----TGGT 97
           +  +S+GS  +D  LG GG     I E+YG   +GKT LA HT   +AQ         G 
Sbjct: 108 VNTISTGSKAVDGILG-GGIMSQSISEVYGEFRTGKTQLA-HTMSVVAQLPPDLGGASGK 165

Query: 98  CAFVDAEHAL--DSI--YARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD-- 147
            A++D E     D I   A + GVD    L+N+L ++    E  +E+ +      A D  
Sbjct: 166 VAYIDTEGTFRPDRIKSIAERFGVDGSMALENILYARAFNSEHQMELINECSSRFAEDKD 225

Query: 148 --IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
             ++++DS+ AL  R +  G  GE L   Q +L +Q L KLT         ++  NQ++ 
Sbjct: 226 FRLLIVDSIMALF-RVDYSG-RGE-LSERQQKL-AQMLSKLTKLSEEYNIAILLTNQVQS 281

Query: 206 KIGVMF----GSPETTTGGNALKFYSSVRLDIRR 235
             G       G      GG+ L   S+ R+ +R+
Sbjct: 282 DPGATMTFVAGGALKPIGGHILSHASATRMFLRK 315


>gi|39939201|ref|NP_950967.1| hypothetical protein PAM_715 [Onion yellows phytoplasma OY-M]
 gi|39722310|dbj|BAD04800.1| hypothetical protein [Onion yellows phytoplasma OY-M]
          Length = 61

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 37/53 (69%)

Query: 281 ELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           E+IDL    +++ KSG+W+SFK +++GQG EN K +L  N +I  ++ + +++
Sbjct: 3   EVIDLATNLNLIQKSGSWYSFKDEKIGQGTENVKKYLTNNPKIYNHLVAEIKK 55


>gi|119872227|ref|YP_930234.1| DNA repair and recombination protein RadA [Pyrobaculum islandicum
           DSM 4184]
 gi|143811446|sp|Q9UWR5|RADA_PYRIL RecName: Full=DNA repair and recombination protein radA
 gi|119673635|gb|ABL87891.1| DNA repair and recombination protein RadA [Pyrobaculum islandicum
           DSM 4184]
          Length = 330

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 108/244 (44%), Gaps = 34/244 (13%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA----QSQKTGGTCA- 99
           I  +S+G   LD  LG GG     + E+ G   SGKT L  H +A      ++ GG  A 
Sbjct: 96  IRRISTGVRALDELLG-GGIETRAVTEVAGEFGSGKTQLC-HQLAVMVQLPEERGGLGAK 153

Query: 100 --FVDAEHALDS------IYARKLGVD--LKNLLISQPDTGEQALEITDM---LVRSGAV 146
             ++D E+            AR L  D  L N+  ++  + +  + + D    ++R   V
Sbjct: 154 AIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSSDHQMILVDQAKSIIRQHNV 213

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++++DSV A   R+E  G   E+L   Q +L ++ +  L          +V  NQ+  +
Sbjct: 214 ALLIVDSVIAHF-RSEFPGR--ENLAERQQKL-NKHVADLLRLADAYDVAVVITNQVMAQ 269

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
             V FG+P    GGN L   ++ RL +R     K K++I     R+  + +    P  +V
Sbjct: 270 PDVFFGNPLRPAGGNILAHGATYRLWLR-----KSKENI-----RIAKIFDSPYHPEGEV 319

Query: 267 EFDI 270
            F I
Sbjct: 320 SFRI 323


>gi|326804556|ref|YP_004327427.1| UvsX RecA-like recombination protein [Salmonella phage Vi01]
 gi|301795206|emb|CBW37924.1| UvsX RecA-like recombination protein [Salmonella phage Vi01]
          Length = 363

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 70/330 (21%), Positives = 131/330 (39%), Gaps = 35/330 (10%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV----EIYGPESSGKTTLALHTIAQ-- 90
           S+ ++ +   + S+G   L+IA    G P G I     ++ G   + KT   L  +    
Sbjct: 24  SKTTLLDKQVIASTGIPLLNIAWT--GRPDGGIHSGSKQLVGDSRTFKTMFGLVDVKAYL 81

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV----RSGAV 146
            +     C F D+E   +  Y   +G+D+  + +  P    + ++I  M +    + G  
Sbjct: 82  DKYPDAICVFGDSEFGANQKYWDAMGIDMSRV-VHVPIVSVENMQIVFMQMLNDTQRGEH 140

Query: 147 DIIVIDSVAALTPRAEIEGDM-GESLPGM-QARLMSQALRKLTSSISRSKCILVFINQMR 204
            I  IDS++ L    E+   + GE    M +AR ++   R +T  ++    ++V+IN   
Sbjct: 141 IIFFIDSISQLPSTKEVNDAIKGEDKQDMTRARALNSFWRTVTVQLNMKNLLMVWINSYY 200

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
            +IG  +  P    G         +    RR         I G Q  + ++K +      
Sbjct: 201 DEIGNDYAEPNLKGGKQGFLSCDLIWFITRRQVKEDGDKEIRGWQFVINIMKGRHVKEKA 260

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVD-KSGAWFSFKGQRLGQGRENSK--------- 314
           +    ++Y  GI  +  L+++      V+  SG+W+    QR  +G  N +         
Sbjct: 261 KFPVTVLYDGGIDKWSGLLEIARALGYVELVSGSWY----QRTAKGGFNQEKETKLRKSQ 316

Query: 315 ------IFLRENIEIAENIESLLRQNAGLV 338
                   L EN +  ++I S+   + G V
Sbjct: 317 LGDDFWFPLLENPQFCDDIHSMCGISTGPV 346


>gi|327296680|ref|XP_003233034.1| meiotic recombination protein dmc1 [Trichophyton rubrum CBS 118892]
 gi|326464340|gb|EGD89793.1| meiotic recombination protein dmc1 [Trichophyton rubrum CBS 118892]
          Length = 337

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 107/237 (45%), Gaps = 37/237 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IA 89
           M+LG Q    + +  +S+GS   D  LG GGF    I E+YG    GKT L+ HT   IA
Sbjct: 86  MELGHQR---KRVVKISTGSKQFDTILG-GGFQSMSISEVYGEFRCGKTQLS-HTMSVIA 140

Query: 90  QSQK----TGGTCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEIT 137
           Q  K      G  A++D E        +  A + GVD    L+N+  ++    E  LE+ 
Sbjct: 141 QLPKDMGGAEGKAAYIDTEGTFRPERIAQIAERFGVDPDSALENISYARALNSEHQLELL 200

Query: 138 DMLVR---SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           + L +   SG   +++IDS+     R +  G  GE L   Q +L +Q L KL        
Sbjct: 201 NTLAKEFASGEYRLLIIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFN 256

Query: 195 CILVFINQMRMKIG--VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241
             ++  NQ++   G   +F   +     GG+ L   S+ R+ +R      RV  I+D
Sbjct: 257 VCVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTRVLLRKGRGDERVAKIQD 313


>gi|296811726|ref|XP_002846201.1| meiotic recombination protein dmc1 [Arthroderma otae CBS 113480]
 gi|238843589|gb|EEQ33251.1| meiotic recombination protein dmc1 [Arthroderma otae CBS 113480]
          Length = 342

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 107/237 (45%), Gaps = 37/237 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IA 89
           M+LG Q    + +  +S+GS   D  LG GGF    I E+YG    GKT L+ HT   IA
Sbjct: 91  MELGHQR---KRVVKISTGSKQFDSILG-GGFQSMSISEVYGEFRCGKTQLS-HTMSVIA 145

Query: 90  QSQK----TGGTCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEIT 137
           Q  K      G  A++D E        +  A + GVD    L+N+  ++    E  LE+ 
Sbjct: 146 QLPKDMGGAEGKAAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELL 205

Query: 138 DMLVR---SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           + L +   SG   +++IDS+     R +  G  GE L   Q +L +Q L KL        
Sbjct: 206 NTLAKEFASGEYRLLIIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFN 261

Query: 195 CILVFINQMRMKIG--VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241
             ++  NQ++   G   +F   +     GG+ L   S+ R+ +R      RV  I+D
Sbjct: 262 VCVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTRVLLRKGRGDERVAKIQD 318


>gi|124486092|ref|YP_001030708.1| hypothetical protein Mlab_1272 [Methanocorpusculum labreanum Z]
 gi|124363633|gb|ABN07441.1| DNA repair and recombination protein RadB [Methanocorpusculum
           labreanum Z]
          Length = 224

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 8/122 (6%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + ++ +S+G+ GLD  LG GG     I + +G   SGK+TL +       + G    ++D
Sbjct: 3   DAVKKISTGASGLDTLLG-GGIEPRMITQFFGEAGSGKSTLCMTAAVSVLRKGLGVVYID 61

Query: 103 AEHALDSIYARKLGVDL----KNLLISQPDT-GEQALEI--TDMLVRSGAVDIIVIDSVA 155
           +E      +++  G       K+L + +P T  EQ L I  ++ L++SG   +IV+DS  
Sbjct: 62  SEGFSIERFSQIAGASTEECAKHLYVFEPATFAEQGLMISESEQLIKSGTAGLIVLDSAT 121

Query: 156 AL 157
           AL
Sbjct: 122 AL 123


>gi|123408472|ref|XP_001303202.1| DNA repair protein RAD51 homolog [Trichomonas vaginalis G3]
 gi|84784038|gb|ABC61984.1| Rad51-like protein A [Trichomonas vaginalis]
 gi|121884563|gb|EAX90272.1| DNA repair protein RAD51 homolog, putative [Trichomonas vaginalis
           G3]
          Length = 329

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 101/237 (42%), Gaps = 37/237 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  LG GG   G + EI+G   +GKT L  HT+A + +         G C +
Sbjct: 93  LTTGSTELDKLLG-GGIETGSVTEIFGEFRTGKTQLC-HTLAVTCQLPIENGGGQGKCLW 150

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQP---DTGEQALEITDMLVRSGAVDII 149
           +D E           A++ G+D    + N+  ++    D   Q L     ++      ++
Sbjct: 151 IDTEGTFRPERIIPIAQRFGLDPDDVMDNIAYARAYNSDHQSQLLVTASAMMAEAHYALL 210

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMS--QALRKLTSSISRSKCILVFINQMRMKI 207
           ++DS   L  R +  G  GE    + AR M   Q LR +          +V  NQ+  ++
Sbjct: 211 IVDSSTNLY-RTDYSG-RGE----LSARQMHLGQFLRNIQRLADEYGIAVVITNQVVAQV 264

Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
               MF S P+   GGN +   S  RL +R      RV  I D  S+  N+   ++ 
Sbjct: 265 DGAAMFVSDPKKPIGGNIMAHASQTRLSLRKGRGETRVCKIYDSPSLPENEATFQIT 321


>gi|308814395|ref|YP_003934669.1| RecA-like recombinase protein [Shigella phage SP18]
 gi|308205987|gb|ADO19386.1| RecA-like recombinase protein [Shigella phage SP18]
          Length = 392

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 128/308 (41%), Gaps = 28/308 (9%)

Query: 7   MNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG---IG 62
           M+I D KS+ ++A+ S++     K            F   +VV +    L+IA+     G
Sbjct: 1   MSIADLKSRLIKASTSKMTATLTKS---------KFFNDKDVVRTKIPMLNIAISGALDG 51

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIA--QSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           G   G  +   GP    K+ + L  ++   ++     C F D+E  +   Y R + VD +
Sbjct: 52  GMQSGLTI-FAGPSKHFKSNMGLTMVSAYMNKYPDAICLFYDSEFGITEAYLRAMKVDPE 110

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVD-----IIVIDSVAALTPRAEIEGDMGESLPG-- 173
             +I  P    + L++ DM+ +  A++     II IDS+  +  + E E  M E + G  
Sbjct: 111 R-VIHTPIQSVEQLKV-DMVNQLEAIERGEKVIIFIDSIGNMASKKETEDAMNEKVVGDM 168

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
            +A+ +    R +T   S      V +N     I +   S    TGG  + + +     I
Sbjct: 169 TRAKSLKSLFRIVTPYFSIKDIPCVAVNHTIETIEMY--SKTVMTGGTGVMYSADTVFII 226

Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVD 293
            +    +    + G Q  +   K++M     +   D+ +  GI  +  L+D+ ++   V 
Sbjct: 227 GKRQIKETGKELEGFQFVLNAEKSRMVKEKSKFFIDVKFDGGIDPYSGLLDMAMEIGFVV 286

Query: 294 KSGA-WFS 300
           K    W++
Sbjct: 287 KPKVGWYN 294


>gi|156065967|ref|XP_001598905.1| hypothetical protein SS1G_00994 [Sclerotinia sclerotiorum 1980]
 gi|154691853|gb|EDN91591.1| hypothetical protein SS1G_00994 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 325

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 98/212 (46%), Gaps = 32/212 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQKT----GGTCAF 100
           +S+GS  LD  L  GGF    I E++G    GKT LA HT   IAQ  K      G  A+
Sbjct: 86  ISTGSKQLDACLN-GGFQTMSISEVFGEFRCGKTQLA-HTMAVIAQLPKNMGGAEGKVAY 143

Query: 101 VDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149
           +D E        +  A + GVD    L+N++ ++    E  LE+ + L ++ A D   ++
Sbjct: 144 IDTEGTFRPERIAEIAERFGVDPDQALENIVYARAQNTEMQLELLEGLAQNFATDEYRLL 203

Query: 150 VIDSVAALTPRAEI--EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IDS+ +L  R++    G++ E    + A      LR+ T        ++   NQ+    
Sbjct: 204 IIDSIMSLY-RSDFIGRGELSERQSALNA-----FLRRATQMAEEFNLVVFMTNQVMSDP 257

Query: 208 G--VMFGSPE--TTTGGNALKFYSSVRLDIRR 235
           G   +F   +     GG+ L   S+ R+ +R+
Sbjct: 258 GASALFAGADGRKPAGGHILAHASTTRILLRK 289


>gi|62738997|pdb|2BKE|A Chain A, Conformational Flexibility Revealed By The Crystal
           Structure Of A Crenarchaeal Rada
          Length = 324

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 94/210 (44%), Gaps = 25/210 (11%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-----QSQKTG--GT 97
           ++ +S+GS  LD  L  GG       E +G   SGKT L  H ++       +K G  G 
Sbjct: 86  VKKISTGSQALD-GLLAGGIETRTXTEFFGEFGSGKTQLC-HQLSVNVQLPPEKGGLSGK 143

Query: 98  CAFVDAEHALD----SIYARKLGVDLKNL-----LISQPDTGEQALEITDM---LVRSGA 145
             ++D E           A+ LG+D+ N+      I   +T  Q   + D+   + +  +
Sbjct: 144 AVYIDTEGTFRWERIENXAKALGLDIDNVXNNIYYIRAINTDHQIAIVDDLQELVSKDPS 203

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           + +IV+DSV +   RAE  G   E+L   Q +L ++ L +LT         ++  NQ+  
Sbjct: 204 IKLIVVDSVTSHF-RAEYPGR--ENLAVRQQKL-NKHLHQLTRLAEVYDIAVIITNQVXA 259

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           +    +G P    GG+ L     +R+ +++
Sbjct: 260 RPDXFYGDPTVAVGGHTLYHVPGIRIQLKK 289


>gi|242281112|ref|YP_002993241.1| DNA repair protein RadA [Desulfovibrio salexigens DSM 2638]
 gi|242124006|gb|ACS81702.1| DNA repair protein RadA [Desulfovibrio salexigens DSM 2638]
          Length = 439

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 59/123 (47%), Gaps = 7/123 (5%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E  E  S+G   LD  LG G  P G ++ + G    GK+TL L   A+  + G    +  
Sbjct: 62  EHTEARSTGFKPLDTVLGKGFVPGGAVL-VGGEPGIGKSTLLLQLAAEQCRMGNKAVYFS 120

Query: 103 AEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT-P 159
            E +L  I  R  +LGV    L+       E+AL I +   +    D+++IDSV  LT P
Sbjct: 121 GEESLAQIRGRADRLGVLQSGLMAVASTNAEEALSILEAPEKP---DLMIIDSVQTLTSP 177

Query: 160 RAE 162
           RA+
Sbjct: 178 RAD 180


>gi|326476592|gb|EGE00602.1| meiotic recombination protein dmc1 [Trichophyton tonsurans CBS
           112818]
          Length = 337

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 107/237 (45%), Gaps = 37/237 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IA 89
           M+LG Q    + +  +S+GS   D  LG GGF    I E+YG    GKT L+ HT   IA
Sbjct: 86  MELGHQR---KRVVKISTGSKQFDTILG-GGFQSMSISEVYGEFRCGKTQLS-HTMSVIA 140

Query: 90  QSQK----TGGTCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEIT 137
           Q  K      G  A++D E        +  A + G+D    L+N+  ++    E  LE+ 
Sbjct: 141 QLPKDLGGAEGKAAYIDTEGTFRPERIAQIAERFGIDPDSALENISYARALNSEHQLELL 200

Query: 138 DMLVR---SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           + L +   SG   +++IDS+     R +  G  GE L   Q +L +Q L KL        
Sbjct: 201 NTLAKEFASGEYRLLIIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFN 256

Query: 195 CILVFINQMRMKIG--VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241
             ++  NQ++   G   +F   +     GG+ L   S+ R+ +R      RV  I+D
Sbjct: 257 VCVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTRVLLRKGRGDERVAKIQD 313


>gi|146302794|ref|YP_001190110.1| DNA repair and recombination protein RadA [Metallosphaera sedula
           DSM 5348]
 gi|226736609|sp|A4YCN4|RADA_METS5 RecName: Full=DNA repair and recombination protein radA
 gi|145701044|gb|ABP94186.1| DNA repair and recombination protein RadA [Metallosphaera sedula
           DSM 5348]
          Length = 324

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 93/209 (44%), Gaps = 23/209 (11%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTC 98
           ++ +++GS  LD  LG GG     + E++G   SGKT +        Q         G  
Sbjct: 86  VKKITTGSQALDGLLG-GGIETRTMTELFGEFGSGKTQICHQVSVNVQLPPERGGLSGKA 144

Query: 99  AFVDAEHALDS----IYARKLGVDLKNLL-----ISQPDTGEQAL---EITDMLVRSGAV 146
            ++D E    +      A  LG++ K +L     I   +T  Q     E+ D++ +  ++
Sbjct: 145 LYIDTEGTFRTERIKAMASALGLEPKEVLQNIMSIRAINTDHQIAIVEELQDIIAKDNSI 204

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++V+DS+ +   RAE  G   E+L   Q +L ++ L +L          ++  NQ+  +
Sbjct: 205 KLVVVDSITSHF-RAEYSGR--ENLAVRQQKL-NRHLHQLVRLAEIYDLAVIVTNQVMAR 260

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRR 235
             + +G P    GG+ L     +R+ I++
Sbjct: 261 PDMFYGDPTVAVGGHTLYHVPGIRVQIKK 289


>gi|171186395|ref|YP_001795314.1| DNA repair and recombination protein RadA [Thermoproteus
           neutrophilus V24Sta]
 gi|226736610|sp|B1YC14|RADA_THENV RecName: Full=DNA repair and recombination protein radA
 gi|170935607|gb|ACB40868.1| DNA repair and recombination protein RadA [Thermoproteus
           neutrophilus V24Sta]
          Length = 330

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 24/209 (11%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA----QSQKTGGTCA- 99
           I  +S+G   LD  LG GG     + E+ G   SGKT L  H +A      ++ GG  A 
Sbjct: 96  IRRISTGVKALDELLG-GGIETRAVTEVAGEFGSGKTQLC-HQLAVMVQLPEERGGLGAK 153

Query: 100 --FVDAEHALDS------IYARKLGVD--LKNLLISQPDTGEQALEITDM---LVRSGAV 146
             ++D E+            AR L  D  L N+  ++  + +  + + D    +++   V
Sbjct: 154 AIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSSDHQMILVDQAKSIIKQNNV 213

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++V+DSV A   R+E  G   E+L   Q +L ++ +  L          +V  NQ+  +
Sbjct: 214 ALLVVDSVIAHF-RSEFPGR--ENLAERQQKL-NKHVADLLRLADAYDVAVVITNQVMAQ 269

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRR 235
             V FG+P    GGN L   ++ RL +R+
Sbjct: 270 PDVFFGNPLRPAGGNILAHGATYRLWLRK 298


>gi|15679382|ref|NP_276499.1| DNA repair and recombination protein RadA [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|3914551|sp|O27436|RADA_METTH RecName: Full=DNA repair and recombination protein radA
 gi|2622493|gb|AAB85860.1| DNA repair protein RadA [Methanothermobacter thermautotrophicus
           str. Delta H]
          Length = 311

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 100/206 (48%), Gaps = 23/206 (11%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH---TIAQSQKTGGTCA---FV 101
           +++GS  LD  +G GG     I E++G   SGK+ L+     T+   ++ GG  A   F+
Sbjct: 79  ITTGSKALDELIG-GGIETQAITEVFGEFGSGKSQLSHELAVTVQLPEERGGLDAEAVFI 137

Query: 102 DAEHALD----SIYARKLGVDLKNLL----ISQP-DTGEQAL--EITDMLVRSGA-VDII 149
           D E+          A    +DL+ +L    I++  ++  Q L  E  + L++ G  + ++
Sbjct: 138 DTENTFRPERIEQIANAFELDLEEVLNKIHIARAFNSSHQILMAEKVNELIQEGKNIRLV 197

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           ++DS+ A   RAE  G   E+L   Q +L +Q L  L +  +     +   NQ++ +   
Sbjct: 198 IVDSLTAHF-RAEYVGR--EALATRQQKL-NQHLHTLQNIANTYNAAVFVTNQVQARPDA 253

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRR 235
            FGSP    GG+ L   ++ R+ +++
Sbjct: 254 FFGSPTKAIGGHVLGHAATYRIWLKK 279


>gi|34419243|ref|NP_899256.1| UvsX [Vibrio phage KVP40]
 gi|34332924|gb|AAQ64079.1| UvsX [Vibrio phage KVP40]
          Length = 366

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 113/287 (39%), Gaps = 26/287 (9%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQK--TGGTCAFVDAEHALDSIYARKLGVDL 119
           GG   G  V + GP    K+ L L  +A   K      C F+D E  +   Y R  GVD 
Sbjct: 49  GGLTSGLTV-LAGPSKHFKSNLGLVGVAAYLKKYPDAVCVFIDTEFGITPSYLRSQGVDP 107

Query: 120 KNLLISQPDTGEQ-----ALEITDMLVRSGAVD--------IIVIDSVAALTPRAEIEGD 166
             +L  Q ++ E+     A ++ D+  R  A          I  IDSV  +    EI+  
Sbjct: 108 DRVLHIQCESVERMKFEMANQLKDLAERKRAKKAGEEPDRVIFFIDSVGNVASAKEIDDA 167

Query: 167 MGE-SLPGM-QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
             E S+  M +A+ +    R +T   +      + IN       +   S    +GG  + 
Sbjct: 168 QNEKSVADMSRAKQLKSLFRIITPYFTMLDIPCIAINHTYQTQEIY--SKTVMSGGTGI- 224

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
            YS+  + I      KD   I G    + + K++      +V   + Y  GI  F  L+D
Sbjct: 225 MYSADTVIILGKQQEKDGKDIIGYHFIMNIEKSRFVKEKMKVPLTVTYENGIDPFSGLLD 284

Query: 285 LGVKA-SIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
           + ++   +V  S  W+    QR     E  ++ + E    A+  +++
Sbjct: 285 IALQTGHVVKPSNGWY----QRATVDEETGEMIVEEKKYRAKETQTI 327


>gi|332158421|ref|YP_004423700.1| DNA repair and recombination protein RadA [Pyrococcus sp. NA2]
 gi|331033884|gb|AEC51696.1| DNA repair and recombination protein RadA [Pyrococcus sp. NA2]
          Length = 354

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 101/216 (46%), Gaps = 29/216 (13%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-------QSQKTG 95
           E I  +S+GS  LD  LG GG     I E++G   SGKT LA HT+A       +     
Sbjct: 113 ESIGRISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLA-HTLAVMVQLPPEEGGLN 170

Query: 96  GTCAFVDAEHALDSI----YARKLGVD----LKNLLISQP-DTGEQAL-------EITDM 139
           G+  ++D E+          AR  G+D    LK++ +++  ++  Q L       +I ++
Sbjct: 171 GSVIWIDTENTFRPERIMEIARNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKEL 230

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           L     V ++++DS+ +   R+E    +G      + + +++ L  L    +  +  +  
Sbjct: 231 LNSEKPVKLLIVDSLTSHF-RSEY---IGRGALAERQQKLAKHLADLHRLANLYEIAVFV 286

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
            NQ++ +    FG P    GG+ L   +++R+ +R+
Sbjct: 287 TNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRK 322


>gi|294661454|ref|YP_003579907.1| UvsX RecA-like recombination protein [Klebsiella phage KP15]
 gi|292660615|gb|ADE34863.1| UvsX RecA-like recombination protein [Klebsiella phage KP15]
          Length = 385

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 116/276 (42%), Gaps = 34/276 (12%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           S+  +F  I +  +    L++AL     GG   G +    GP    K+ L L T+A   K
Sbjct: 23  SESDVFNNITITRTRVPILNLALSGAFNGGLTSG-LTLFAGPSKHFKSNLGLLTVAAYLK 81

Query: 94  T--GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD---- 147
           T     C F D+E  +   Y + +GVD   ++ ++  T EQ     D++ +  A++    
Sbjct: 82  TYEDAVCLFYDSEKGVTKSYLKSMGVDPDRVVYTRITTVEQLR--NDVVSQLNALERGDK 139

Query: 148 -IIVIDSVAALTPRAEI--------EGDM--GESLPGMQARLMSQALRKLTSSISRSKCI 196
            I+ +DSV     + E+        + DM   ++L GM  R+++  L  L   +    CI
Sbjct: 140 VIVFVDSVGNTASKKELADALSDNDKQDMTRAKALKGM-FRMVTPYLADLDIPMV---CI 195

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
               +   M       S +  +GG  L  YS+    I     +K+   + G    + + K
Sbjct: 196 CHTYDTQEMY------SKKVISGGTGL-MYSADTAIILGKQQVKEGTEVVGYDFIMNIEK 248

Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           ++      +    + Y  GIS +  L+DL ++ + V
Sbjct: 249 SRFVKEKSKFPLHVTYEGGISMYSGLLDLAMEMNFV 284


>gi|20091277|ref|NP_617352.1| hypothetical protein MA2446 [Methanosarcina acetivorans C2A]
 gi|19916400|gb|AAM05832.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 241

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           +E +S+G  GLD+ L  GG+PKG+ + + GP  SGKT L LH + +S + G  C  V
Sbjct: 1   MESLSTGVEGLDL-LTDGGYPKGKSILVTGPPGSGKTILGLHFLHRSCQEGEKCILV 56


>gi|6714639|dbj|BAA89533.1| LIM15/DMC1 homolog [Coprinopsis cinerea]
          Length = 345

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 98/212 (46%), Gaps = 29/212 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-------QSQKTGGTCA 99
           V+S+GS  +D  LG GG     I E+YG   +GKT LA HT++       +     G  A
Sbjct: 107 VISTGSKLVDGILG-GGVMSQSITEVYGEYRTGKTQLA-HTMSVVAQLPPEYGGAAGKVA 164

Query: 100 FVDAEHAL--DSI--YARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---- 147
           ++D E     D I   A + GVD    L+N+L ++    E  +E+ +      A D    
Sbjct: 165 YIDTEGTFRPDRIRAIADRFGVDGTMALENILYARAFNSEHQMELINECSARFAEDKDFR 224

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +++IDS+ AL  R +  G  GE L   Q +L +Q L KLT         ++  NQ++   
Sbjct: 225 LLIIDSIMALF-RVDYSG-RGE-LSERQQKL-AQMLSKLTKLSEEFNIAVLMTNQVQSDP 280

Query: 208 GVMF----GSPETTTGGNALKFYSSVRLDIRR 235
           G       G      GG+ L   S+ R+ +R+
Sbjct: 281 GATMTFVAGGALKPIGGHILSHASATRIFLRK 312


>gi|162450010|ref|YP_001612377.1| recA recombinase-like protein [Sorangium cellulosum 'So ce 56']
 gi|161160592|emb|CAN91897.1| recA recombinase homolog [Sorangium cellulosum 'So ce 56']
          Length = 269

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 12/106 (11%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGK-TTLALHTIAQSQK----------TGGTCAFVDAEHA 106
           AL  GG P+G +VE+  P   G+ T+LAL   A +Q            G  CA++D   +
Sbjct: 42  ALPEGGLPRGGVVELAAPRGLGRSTSLALSACASAQAEARLRGTSATAGAWCAWIDPSGS 101

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           L +    +  VDL  LL+ +P   E   ++   +  S A  ++VID
Sbjct: 102 LYAPAVARAQVDLSRLLVVRPPP-EVLAKVAVRMAMSRAFAVLVID 146


>gi|45185912|ref|NP_983628.1| ACR226Wp [Ashbya gossypii ATCC 10895]
 gi|44981702|gb|AAS51452.1| ACR226Wp [Ashbya gossypii ATCC 10895]
          Length = 381

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 88/207 (42%), Gaps = 21/207 (10%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  LG GG   G I E++G   +GK+ L  HT+A + +         G C 
Sbjct: 139 CLTTGSKNLDTLLG-GGIETGSITELFGEFRTGKSQLC-HTLAVTCQIPLDMGGGEGKCL 196

Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDI 148
           ++D E     I     A++ G+D    L N+  ++    +  L + D    ++      +
Sbjct: 197 YIDTEGTFRPIRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSL 256

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IV+DS+ AL  R +  G    S   M      +AL++L      +  +   +        
Sbjct: 257 IVVDSIMALY-RTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGAA 315

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRR 235
           +    P+   GGN +   S+ RL  ++
Sbjct: 316 MFNPDPKKPIGGNIMAHSSTTRLGFKK 342


>gi|51247475|pdb|1SZP|A Chain A, A Crystal Structure Of The Rad51 Filament
 gi|51247476|pdb|1SZP|B Chain B, A Crystal Structure Of The Rad51 Filament
 gi|51247477|pdb|1SZP|C Chain C, A Crystal Structure Of The Rad51 Filament
 gi|51247478|pdb|1SZP|D Chain D, A Crystal Structure Of The Rad51 Filament
 gi|51247479|pdb|1SZP|E Chain E, A Crystal Structure Of The Rad51 Filament
 gi|51247480|pdb|1SZP|F Chain F, A Crystal Structure Of The Rad51 Filament
          Length = 321

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 93/208 (44%), Gaps = 23/208 (11%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  LG GG   G I E++G   +GK+ L  HT+A + +         G C 
Sbjct: 80  CLTTGSKNLDTLLG-GGVETGSITELFGEFRTGKSQLC-HTLAVTCQIPLDIGGGEGKCL 137

Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDI 148
           ++D E     +     A++ G+D    L N+  ++    +  L + D    ++      +
Sbjct: 138 YIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSL 197

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IV+DSV AL  R +  G    S   M      +AL++L      +  ++      ++  G
Sbjct: 198 IVVDSVMALY-RTDFSGRGELSARQMHLAKFMRALQRLADQFGVAV-VVTNQVVAQVDGG 255

Query: 209 VMFGS-PETTTGGNALKFYSSVRLDIRR 235
           + F   P+  TGGN +   S+ RL  ++
Sbjct: 256 MAFNPDPKKPTGGNIMAHSSTTRLGFKK 283


>gi|315043933|ref|XP_003171342.1| meiotic recombinase Dmc1 [Arthroderma gypseum CBS 118893]
 gi|311343685|gb|EFR02888.1| meiotic recombinase Dmc1 [Arthroderma gypseum CBS 118893]
          Length = 337

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 107/237 (45%), Gaps = 37/237 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IA 89
           M+LG Q    + +  +S+GS   D  LG GGF    I E+YG    GKT L+ HT   IA
Sbjct: 86  MELGHQR---KRVVKISTGSKQFDSILG-GGFQSMSISEVYGEFRCGKTQLS-HTMSVIA 140

Query: 90  QSQK----TGGTCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEIT 137
           Q  K      G  A++D E        +  A + GVD    L+N+  ++    E  LE+ 
Sbjct: 141 QLPKDMGGAEGKAAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELL 200

Query: 138 DMLVR---SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           + L +   SG   +++IDS+     R +  G  GE L   Q +L +Q L KL        
Sbjct: 201 NTLAKEFASGEYRLLIIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFN 256

Query: 195 CILVFINQMRMKIG--VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241
             ++  NQ++   G   +F   +     GG+ L   S+ R+ +R      RV  ++D
Sbjct: 257 VCVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTRVLLRKGRGDERVAKVQD 313


>gi|327298717|ref|XP_003234052.1| hypothetical protein TERG_05919 [Trichophyton rubrum CBS 118892]
 gi|326464230|gb|EGD89683.1| hypothetical protein TERG_05919 [Trichophyton rubrum CBS 118892]
          Length = 484

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 31/172 (18%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARKLGVD--- 118
           G  +G I E+ GP  SGKT+LA+ T   + K G T  ++D    +  S + + L  D   
Sbjct: 106 GIRRGEITELSGPRGSGKTSLAMTTAVNALKQGETVIWIDTAGPICMSRFEKMLSRDSNP 165

Query: 119 ------LKNLLISQPDTGEQALEITDMLV---RSGAVDIIVIDSVAAL---TPRAEIEGD 166
                 L+NLL  QP T    L +    +         +IV+DS++ L     R+++   
Sbjct: 166 LETQERLQNLLHFQPTTLAHLLALISHPIADFPPPNTGLIVVDSISCLFGSEFRSKLPAK 225

Query: 167 M--GESLPGMQARLMSQA-----LRKLTSSI--------SRSKCILVFINQM 203
           +  G+ LPG  +R   +A       KL  S+        SR  C ++ +N+M
Sbjct: 226 LGKGKDLPGAGSRANKEAQESKLWWKLIGSLSSNLNALASRFDCAVIVVNEM 277


>gi|159484887|ref|XP_001700483.1| Rad51-like protein [Chlamydomonas reinhardtii]
 gi|158272235|gb|EDO98038.1| Rad51-like protein [Chlamydomonas reinhardtii]
          Length = 343

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 108/245 (44%), Gaps = 57/245 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS----QKTG---GTCAF 100
           + +GS  LD  LG GGF    + E++G    GKT LA HT+  +    Q+ G   G  AF
Sbjct: 105 IKTGSTALDELLG-GGFETKSLTEMFGEWRCGKTMLA-HTLCVTTQLPQEEGGGSGKAAF 162

Query: 101 VDAEHA----LDSIYARKLGVD----LKNLLISQPDTGEQA----LEITDMLVRSGAVDI 148
           +D E      L    A + G+D    L N+++++  T E      + +T ++       +
Sbjct: 163 IDTEGTFRPELVKQIAERFGLDPDAVLGNIVVARAHTSEHQADLLISLTALMAEEACFRL 222

Query: 149 IVIDSVAALTP-RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +V+DS+ A  P R +  G  GE         +++  +KL + +++ K I    N   +  
Sbjct: 223 LVVDSLTA--PFRTDYTG-RGE---------LAERQQKLNNVLAKLKKISEEFNVAVVVT 270

Query: 208 ---------GVMFGS-PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
                    G MF S P+   GG+ +   S+ RL +R+           G Q  +KVV  
Sbjct: 271 NQVVSDPGGGAMFVSDPKKPVGGHVMAHASTTRLSLRKG---------KGEQRLIKVV-- 319

Query: 258 KMASP 262
             ASP
Sbjct: 320 --ASP 322


>gi|254572065|ref|XP_002493142.1| Strand exchange protein, forms a helical filament with DNA that
           searches for homology [Pichia pastoris GS115]
 gi|238032940|emb|CAY70963.1| Strand exchange protein, forms a helical filament with DNA that
           searches for homology [Pichia pastoris GS115]
 gi|328352840|emb|CCA39238.1| DNA repair protein rhp51 [Pichia pastoris CBS 7435]
          Length = 362

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 106/245 (43%), Gaps = 37/245 (15%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  LG GG   G I E++G   +GK+ L  HT+A + +         G C 
Sbjct: 121 CITTGSKKLDTLLG-GGIETGSITEVFGEFRTGKSQLC-HTLAVTCQLPIDMGGGEGKCL 178

Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDI 148
           ++D E     I     A++ G++    L N+  ++    +  L++ +    ++      +
Sbjct: 179 YIDTEGTFRPIRLVSIAKRYGLNEDDTLDNVAYARAYNADHQLQLLNQAAAMMSESRFSL 238

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMK 206
           +++DS+ AL  R +  G  GE    + AR M  A  +R L          ++  NQ+  +
Sbjct: 239 LIVDSIMALY-RTDFSG-RGE----LSARQMHVAKYMRTLQRLADEFGIAVLITNQVVAQ 292

Query: 207 I---GVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKN 257
           +    V    P+   GGN +   S+ RL  +      R+  I D   +  ++    + ++
Sbjct: 293 VDASAVFNPDPKKPIGGNIVAHSSTTRLSFKKGKAEQRICKIYDSPCLPESECVFAIYED 352

Query: 258 KMASP 262
            +  P
Sbjct: 353 GIGDP 357


>gi|300708476|ref|XP_002996416.1| hypothetical protein NCER_100491 [Nosema ceranae BRL01]
 gi|239605717|gb|EEQ82745.1| hypothetical protein NCER_100491 [Nosema ceranae BRL01]
          Length = 336

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 99/213 (46%), Gaps = 34/213 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH---TIAQSQKTGGT---CAFV 101
           +S+GS   D  LG GG     I E++G   +GKT LA     T+  S++ GG     AF+
Sbjct: 97  ISTGSTDFDSLLG-GGIQTMSITEMFGEFRTGKTQLATTMCITVQLSEEEGGAKGKAAFI 155

Query: 102 DAE-----HALDSIYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD----I 148
           D E       L  I A +  +D    L N++ ++    E   E+   L    A D    +
Sbjct: 156 DTEGTFRPERLREI-ANRFNIDPDEALDNIIYARAYNSEHQNELVQQLAVKFAEDSKYKL 214

Query: 149 IVIDSVAALTPRAEI--EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRM 205
           +VIDS+ +L  R +    G++GE     + + ++Q L KL  +IS    I V I NQM  
Sbjct: 215 LVIDSIISLF-RVDFSGRGELGE-----RQQKLNQFLSKLI-NISEEFNIAVLITNQMMA 267

Query: 206 -KIGVM--FGSPETTTGGNALKFYSSVRLDIRR 235
              G M     P+   GG+ L   S+ R+ +R+
Sbjct: 268 DPSGAMTFVADPKKPIGGHVLAHASTTRISLRK 300


>gi|307354038|ref|YP_003895089.1| DNA repair and recombination protein RadB [Methanoplanus
           petrolearius DSM 11571]
 gi|307157271|gb|ADN36651.1| DNA repair and recombination protein RadB [Methanoplanus
           petrolearius DSM 11571]
          Length = 226

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 21/191 (10%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +++GS   D  +G GG  K  I ++YG  +SGK+T+ L T  +  K G    ++D E   
Sbjct: 6   INTGSPEFDDLIG-GGLEKKMITQVYGEPASGKSTICLMTAIEQLKAGKKVIYIDTEGFS 64

Query: 108 DSIYARKLGVD----LKNLLISQP-DTGEQALEI--TDMLVRSGA-VDIIVIDSVAALTP 159
              + +  G D     ++L+I +P D   Q L I   D L+++   + +IV+DS  AL  
Sbjct: 65  VERFRQIAGEDNQTLAEDLIIFEPVDFDLQGLMIGECDKLLKTETDIGLIVLDSATALY- 123

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMKIGVMFGSPETTT 218
           R E  G  GES    Q +L SQ +R L    +R   I V + NQ+ M I     +  +  
Sbjct: 124 RVE-GGRSGES----QRKLGSQMIRLL--GFARRYDIPVLVSNQVFMDID---QNAVSGL 173

Query: 219 GGNALKFYSSV 229
           GG +L+  S V
Sbjct: 174 GGTSLRHISKV 184


>gi|14520459|ref|NP_125934.1| DNA repair and recombination protein RadA [Pyrococcus abyssi GE5]
 gi|13878699|sp|Q9V233|RADA_PYRAB RecName: Full=DNA repair and recombination protein radA
 gi|5457674|emb|CAB49165.1| radA DNA repair protein rad51 : DNA repair and recombination
           protein radA [Pyrococcus abyssi GE5]
          Length = 356

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 102/216 (47%), Gaps = 29/216 (13%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-------QSQKTG 95
           E I  +S+GS  LD  LG GG     I E++G   SGKT LA HT+A       +     
Sbjct: 115 ESIGRISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLA-HTLAVMVQLPPEEGGLN 172

Query: 96  GTCAFVDAEHALDSIYARKL----GVD----LKNLLISQP-DTGEQAL-------EITDM 139
           G+  ++D E+       R++    G+D    LK++ +++  ++  Q L       +I ++
Sbjct: 173 GSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKEL 232

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           L     V ++++DS+ +   R+E    +G      + + +++ L  L    +  +  +  
Sbjct: 233 LNTDKPVKLLIVDSLTSHF-RSEY---IGRGALAERQQKLAKHLADLHRLANLYEIAVFV 288

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
            NQ++ +    FG P    GG+ L   +++R+ +R+
Sbjct: 289 TNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRK 324


>gi|320591998|gb|EFX04437.1| DNA repair protein rad51 [Grosmannia clavigera kw1407]
          Length = 354

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 102/245 (41%), Gaps = 35/245 (14%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  LG GG   G I EI+G   +GK+ L  HT+A + +         G C 
Sbjct: 104 CITTGSKNLDTLLG-GGIETGSITEIFGEFRTGKSQLC-HTLAVTCQLPFDCGGGEGKCL 161

Query: 100 FVDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGA---VDI 148
           ++D E           A + G+     L N+ I++    +  L +     R  A     +
Sbjct: 162 YIDTEGTFRPSRVLAAANRYGLSGEEVLDNIAIARAHNSDHQLALLRDAARMMAETRFSL 221

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI- 207
           +VIDS  AL  R +  G  GE L   Q  L  Q LR+L S        +V  NQ+  ++ 
Sbjct: 222 LVIDSATALY-RTDYMG-RGE-LNNRQMHL-GQFLRQLQSMTDTYGIAVVITNQVVAQVD 277

Query: 208 ---GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKN 257
                MF   P+   GGN +   S+ R+ ++      R+  I D   +  +     +  +
Sbjct: 278 GGPSSMFNPDPKKPIGGNIIAHASTTRISLKKGRAETRIAKIYDSPCLPESDCMFAITAD 337

Query: 258 KMASP 262
            +  P
Sbjct: 338 GIGDP 342


>gi|15920489|ref|NP_376158.1| DNA repair and recombination protein RadA [Sulfolobus tokodaii str.
           7]
 gi|20139589|sp|Q975Y1|RADA_SULTO RecName: Full=DNA repair and recombination protein radA
 gi|15621272|dbj|BAB65267.1| 324aa long hypothetical DNA repair protein radA [Sulfolobus
           tokodaii str. 7]
          Length = 324

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 90/206 (43%), Gaps = 23/206 (11%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           +++GS  LD  LG GG     + E++G   SGKT L        Q        GG   ++
Sbjct: 89  ITTGSQALDGLLG-GGIETRTMTELFGEFGSGKTQLCHQLSVNVQLPLEKGGLGGKAVYI 147

Query: 102 DAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITD----MLVRSGAVDII 149
           D E           ++ +G++    + N+   +    +  + I D    ++ +  A+ ++
Sbjct: 148 DTEGTFRWERIEAMSKAIGLEPDSAMNNIYYMRAINSDHQMAIVDDLQELISKDPAIKLV 207

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           ++DSV +   RAE  G   E+L   Q +L ++ L +L          ++  NQ+  +  +
Sbjct: 208 IVDSVTSHF-RAEFPGR--ENLAVRQQKL-NKHLHQLVRLAEMYDLAVIITNQVMARPDM 263

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRR 235
            +G P    GG+ L     +R+ +++
Sbjct: 264 FYGDPTVAVGGHTLYHVPGIRVQLKK 289


>gi|18312075|ref|NP_558742.1| DNA repair and recombination protein RadA [Pyrobaculum aerophilum
           str. IM2]
 gi|20139514|sp|Q8ZYR9|RADA_PYRAE RecName: Full=DNA repair and recombination protein radA
 gi|18159503|gb|AAL62924.1| DNA repair protein radA [Pyrobaculum aerophilum str. IM2]
 gi|18478907|gb|AAL73354.1| DNA repair protein RadA [Pyrobaculum aerophilum]
          Length = 333

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 107/254 (42%), Gaps = 54/254 (21%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA----QSQKTGGTCA- 99
           I  +S+G   LD  LG GG     + EI G   SGKT L  H +A      ++ GG  A 
Sbjct: 99  IRRISTGVRSLDELLG-GGIETRAVTEIVGEFGSGKTQLC-HQLAVMVQLPEERGGLGAK 156

Query: 100 --FVDAEHA--------------LDS-------IYARKLGVDLKNLLISQPDTGEQALEI 136
             ++D E+               LDS        YAR    D + +L+ Q  +       
Sbjct: 157 AIYIDTENTFRPERIMQIAKARGLDSDQALHNIFYARAYSSDHQMILVEQAKS------- 209

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
              +++   V ++V+DSV A   R+E  G   E+L   Q +L ++ +  L          
Sbjct: 210 ---IIKQHNVALLVVDSVIAHF-RSEFPGR--ENLAERQQKL-NKHVADLLRLADAYDVA 262

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           +V  NQ+  +  V FG+P    GGN L   ++ RL +R     K K++I     R+  + 
Sbjct: 263 VVITNQVMAQPDVFFGNPLRPAGGNILAHGATYRLWLR-----KSKENI-----RIAKIF 312

Query: 257 NKMASPFKQVEFDI 270
           +    P  +V F I
Sbjct: 313 DSPYHPEGEVSFRI 326


>gi|254167257|ref|ZP_04874109.1| KaiC domain protein [Aciduliprofundum boonei T469]
 gi|197623520|gb|EDY36083.1| KaiC domain protein [Aciduliprofundum boonei T469]
          Length = 227

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 14/124 (11%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +G  GLD  L  GG PKG  V + G   +GKTT A+  I +    G  C F+  E   
Sbjct: 3   IKTGIEGLDDMLN-GGIPKGHTVAVIGAFGTGKTTFAMQFIWEGLINGERCIFLSLEEDE 61

Query: 108 DSIY--ARKLGVDLKNLLISQ-------PDTGEQALEITDM----LVRSGAVDIIVIDSV 154
           DS+   A K G D    L SQ       P+  + ++E  +     L++      I +DS+
Sbjct: 62  DSVVESASKFGWDYSKYLGSQLQLLKLDPEDAKSSVERLESDIPELIKEFEATRIAVDSI 121

Query: 155 AALT 158
           + +T
Sbjct: 122 SLIT 125


>gi|320170723|gb|EFW47622.1| Rad51 protein [Capsaspora owczarzaki ATCC 30864]
          Length = 337

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 100/238 (42%), Gaps = 57/238 (23%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA------QSQKTG-GTCA 99
            ++SGS  LD  L  GGF  G I EI+G   +GKT +  HT+A       SQ  G G C 
Sbjct: 99  TLTSGSKELDKLLQ-GGFETGAITEIFGEFRTGKTQIC-HTLAVTCQLPTSQGGGEGKCL 156

Query: 100 FVDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITD 138
           ++D E                      LD++ YAR    D +  L+ Q            
Sbjct: 157 YIDTEGTFRPERLLAAAERYGLSGPDVLDNVAYARAYNTDHQLALLMQASA--------- 207

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCI 196
           M+  S    ++++DS  AL  R +  G  GE    + AR M  A  +R L          
Sbjct: 208 MMAES-RYALLIVDSATALY-RTDYSGR-GE----LSARQMHLAKFMRSLLRLADEFGIA 260

Query: 197 LVFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
           +V  NQ+  ++  G MF + P+   GGN +   S+ RL +R      R+  I D  S+
Sbjct: 261 VVVTNQVVAQVDGGAMFAADPKKPIGGNIMAHASTTRLYLRKGRAETRICKIYDSPSL 318


>gi|254166621|ref|ZP_04873475.1| DNA repair and recombination protein RadB [Aciduliprofundum boonei
           T469]
 gi|254168908|ref|ZP_04875748.1| DNA repair and recombination protein RadB [Aciduliprofundum boonei
           T469]
 gi|197622172|gb|EDY34747.1| DNA repair and recombination protein RadB [Aciduliprofundum boonei
           T469]
 gi|197624231|gb|EDY36792.1| DNA repair and recombination protein RadB [Aciduliprofundum boonei
           T469]
          Length = 234

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 93/206 (45%), Gaps = 19/206 (9%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           F  ++ + SG   +D  L  GGF +G I E+YG   SGKT + L T     K G    ++
Sbjct: 5   FPYVDKIKSGCESIDSLLN-GGFERGCITELYGEAGSGKTNICLSTAINVAKEGHYVIYI 63

Query: 102 DAEHALDSIYARKLGVD--LKNLLISQPDTGEQALEI----TDMLVRSGAVDIIVIDSVA 155
           D E      +++  G +   K +L  +     Q  EI     +++ +   + ++++DS+ 
Sbjct: 64  DTEGISMERFSQLGGNEDIAKRILFYKVYKFSQQAEIIERAINLVEKRNDIILLIVDSMT 123

Query: 156 ALTPRAE--IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMKIGVMFG 212
               RAE  +E D+        A  +S     + +SI+R K I V I NQ+ M       
Sbjct: 124 EFY-RAERGVEEDLSAKKRSSLAWQLS-----ILNSIARKKNIAVIITNQVYMDTTTKEL 177

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGS 238
            P    GG+ L   +   + +R++G+
Sbjct: 178 RP---IGGHTLHHNAKTIIFLRKIGN 200


>gi|289596232|ref|YP_003482928.1| putative circadian clock protein, KaiC [Aciduliprofundum boonei
           T469]
 gi|289534019|gb|ADD08366.1| putative circadian clock protein, KaiC [Aciduliprofundum boonei
           T469]
          Length = 229

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 14/124 (11%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +G  GLD  L  GG PKG  V + G   +GKTT A+  I +    G  C F+  E   
Sbjct: 5   IKTGIEGLDDMLN-GGIPKGHTVAVIGAFGTGKTTFAMQFIWEGLINGERCIFLSLEEDE 63

Query: 108 DSIY--ARKLGVDLKNLLISQ-------PDTGEQALEITDM----LVRSGAVDIIVIDSV 154
           DS+   A K G D    L SQ       P+  + ++E  +     L++      I +DS+
Sbjct: 64  DSVVESASKFGWDYSKYLGSQLQLLKLDPEDAKSSVERLESDIPELIKEFEATRIAVDSI 123

Query: 155 AALT 158
           + +T
Sbjct: 124 SLIT 127


>gi|87307673|ref|ZP_01089817.1| hypothetical protein DSM3645_29167 [Blastopirellula marina DSM
           3645]
 gi|87289843|gb|EAQ81733.1| hypothetical protein DSM3645_29167 [Blastopirellula marina DSM
           3645]
          Length = 237

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 9/112 (8%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYG-PESSGKTTLAL----HTIAQSQKTGGTCAF 100
           ++ S+GS  LD  L  GG  +G ++E  G   +SG  TLAL    H  A +Q    T   
Sbjct: 31  DITSTGSTALDELLPCGGVRRGGMIEWIGCTPASGAGTLALIAARHVCASNQ----TFLV 86

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           +D+   +       LG+DL  +LI +P T ++A    +  +R  A+ ++  D
Sbjct: 87  IDSRRQISPAALANLGLDLAKILIVRPQTKQEAWWACEEALRCKAIGLVWAD 138


>gi|145952326|gb|ABP98984.1| DMC1 [Hieracium caespitosum]
 gi|145952328|gb|ABP98985.1| DMC1 [Hieracium caespitosum]
          Length = 343

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 95/208 (45%), Gaps = 26/208 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  LD  LG GG    +I E +G   SGKT LA HT+  S +         G  A+
Sbjct: 107 ITTGSQALDELLG-GGIETLQITEAFGEFRSGKTQLA-HTLCVSTQLPTNMKGGNGKVAY 164

Query: 101 VDAEHAL--DSIY--ARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149
           +D E     D I   A + G+D    L N++ ++  T E    +   L    + +   ++
Sbjct: 165 IDTEGTFRPDRIVPIAERFGMDAGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLL 224

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DSV AL  R +  G  GE L   Q +L +Q L +LT         +   NQ+    G 
Sbjct: 225 IVDSVIALF-RVDFTG-RGE-LAERQQKL-AQMLSRLTKIAEEFNVAVYMTNQVIADPGG 280

Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIRR 235
            V    P+   GG+ L   ++VRL  R+
Sbjct: 281 GVFISDPKKPAGGHVLAHAATVRLMFRK 308


>gi|255712479|ref|XP_002552522.1| KLTH0C06842p [Lachancea thermotolerans]
 gi|238933901|emb|CAR22084.1| KLTH0C06842p [Lachancea thermotolerans]
          Length = 381

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 88/207 (42%), Gaps = 21/207 (10%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  LG GG   G I E++G   +GK+ L  HT+A + +         G C 
Sbjct: 140 CLTTGSKNLDTLLG-GGIETGSITELFGEFRTGKSQLC-HTLAVTCQIPLDMGGGEGKCL 197

Query: 100 FVDAEHALDSIY----ARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDI 148
           ++D E     I     A++ G+D    L N+  ++    +  L + D    ++      +
Sbjct: 198 YIDTEGTFRPIRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSL 257

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IV+DS+ AL  R +  G    S   M      +AL++L      +  +   +        
Sbjct: 258 IVVDSIMALY-RTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGSA 316

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRR 235
           +    P+   GGN +   S+ RL  ++
Sbjct: 317 MFNPDPKKPIGGNIMAHSSTTRLGFKK 343


>gi|254166817|ref|ZP_04873671.1| KaiC domain protein [Aciduliprofundum boonei T469]
 gi|197624427|gb|EDY36988.1| KaiC domain protein [Aciduliprofundum boonei T469]
          Length = 227

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 14/124 (11%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +G  GLD  L  GG PKG  V + G   +GKTT A+  I +    G  C F+  E   
Sbjct: 3   IKTGIEGLDDMLN-GGIPKGHTVAVIGAFGTGKTTFAMQFIWEGLINGERCIFLSLEEDE 61

Query: 108 DSIY--ARKLGVDLKNLLISQ-------PDTGEQALEITDM----LVRSGAVDIIVIDSV 154
           DS+   A K G D    L SQ       P+  + ++E  +     L++      I +DS+
Sbjct: 62  DSVVESASKFGWDYSKYLGSQLQLLKLDPEDAKSSVERLESDIPELIKEFEATRIAVDSI 121

Query: 155 AALT 158
           + +T
Sbjct: 122 SLIT 125


>gi|197122655|ref|YP_002134606.1| hypothetical protein AnaeK_2250 [Anaeromyxobacter sp. K]
 gi|196172504|gb|ACG73477.1| conserved hypothetical protein [Anaeromyxobacter sp. K]
          Length = 228

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            V SG   +D AL  GGFP+G + E+ G  +SGKT +AL  +A         A+VD    
Sbjct: 31  CVPSGLPEVDAALPGGGFPRGALCELAGGPASGKTAVALSLVAGLGPE-DLSAWVDVRGD 89

Query: 107 LDSIYARKLGVDLKNLLISQPDTG 130
           L    A   GVDL  LL+ +P  G
Sbjct: 90  LYPPAAAARGVDLARLLVVRPAAG 113


>gi|294979775|pdb|3LDA|A Chain A, Yeast Rad51 H352y Filament Interface Mutant
          Length = 400

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 93/208 (44%), Gaps = 23/208 (11%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  LG GG   G I E++G   +GK+ L  HT+A + +         G C 
Sbjct: 159 CLTTGSKNLDTLLG-GGVETGSITELFGEFRTGKSQLC-HTLAVTCQIPLDIGGGEGKCL 216

Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDI 148
           ++D E     +     A++ G+D    L N+  ++    +  L + D    ++      +
Sbjct: 217 YIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSL 276

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IV+DSV AL  R +  G    S   M      +AL++L      +  ++      ++  G
Sbjct: 277 IVVDSVMALY-RTDFSGRGELSARQMHLAKFMRALQRLADQFGVAV-VVTNQVVAQVDGG 334

Query: 209 VMFGS-PETTTGGNALKFYSSVRLDIRR 235
           + F   P+   GGN + + S+ RL  ++
Sbjct: 335 MAFNPDPKKPIGGNIMAYSSTTRLGFKK 362


>gi|284176049|ref|ZP_06390018.1| putative circadian clock protein, KaiC [Sulfolobus solfataricus
           98/2]
 gi|261600948|gb|ACX90551.1| putative circadian clock protein, KaiC [Sulfolobus solfataricus
           98/2]
          Length = 262

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 9/83 (10%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY--ARKLGVDL 119
           GG P+G  + + G   +GKT  +LH IA+  K G  C +V  E + DSI   A++   D 
Sbjct: 18  GGIPQGFFIALTGEPGTGKTIFSLHFIAKGLKEGDPCIYVTTEESRDSIIRQAKQFNWDF 77

Query: 120 KNLLISQPDTGEQALEITDMLVR 142
           +  +       E+ L I D L+R
Sbjct: 78  EEYI-------EKKLIIIDALMR 93


>gi|225432804|ref|XP_002279369.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 384

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 94/208 (45%), Gaps = 26/208 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  LD  LG GG     I E +G   SGKT LA HT+  S +         G  A+
Sbjct: 108 ITTGSQALDELLG-GGIETSAITEAFGEFRSGKTQLA-HTLCVSTQLPTSMRGGNGKVAY 165

Query: 101 VDAEHAL--DSIY--ARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149
           +D E     D I   A + G+D    L N++ ++  T E    +   L    + +   ++
Sbjct: 166 IDTEGTFRPDRIVPIAERFGMDAGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLL 225

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           ++DSV AL  R +  G  GE L   Q +L +Q L +LT         +   NQ+      
Sbjct: 226 IVDSVIALF-RVDFTG-RGE-LADRQQKL-AQMLSRLTKIAEEFNVAVYMTNQVIADPGG 281

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
           GV    P+   GG+ L   +++RL  R+
Sbjct: 282 GVFISDPKKPAGGHVLAHAATIRLMFRK 309


>gi|297618887|ref|YP_003706992.1| AAA ATPase [Methanococcus voltae A3]
 gi|297377864|gb|ADI36019.1| AAA ATPase [Methanococcus voltae A3]
          Length = 280

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 71/158 (44%), Gaps = 8/158 (5%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD--- 118
           G   K  I +IYGP  SGKT + +  + +  K      ++D E +L +   +++      
Sbjct: 8   GEIEKKTITQIYGPPGSGKTNICIIAMIKFAKNNQKVIYIDTEGSLSTERVKQICPQDSE 67

Query: 119 --LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
              KN L+ +P T E+   + + L     + +I++D +++L  R E+  ++  +      
Sbjct: 68  GIFKNTLLCEPYTFEEQCNVIESLEAVENIGLIIVDGISSLY-RLELSNNVFHNTE--LN 124

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           R +++ +  L     ++   ++  NQ +  IG     P
Sbjct: 125 RNLARQIHILNKIAKKNDTAVLLTNQAKDSIGYKSEPP 162


>gi|57642166|ref|YP_184644.1| DNA repair and recombination protein RadB [Thermococcus
           kodakarensis KOD1]
 gi|13878674|sp|P95547|RADB_PYRKO RecName: Full=DNA repair and recombination protein radB
 gi|75766445|pdb|2CVF|A Chain A, Crystal Structure Of The Radb Recombinase
 gi|75766446|pdb|2CVF|B Chain B, Crystal Structure Of The Radb Recombinase
 gi|75766447|pdb|2CVH|A Chain A, Crystal Structure Of The Radb Recombinase
 gi|75766448|pdb|2CVH|B Chain B, Crystal Structure Of The Radb Recombinase
 gi|6009935|dbj|BAA11830.2| Pk-rec [Thermococcus kodakarensis KOD1]
 gi|57160490|dbj|BAD86420.1| RadB recombinase [Thermococcus kodakarensis KOD1]
          Length = 220

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 37/58 (63%), Gaps = 4/58 (6%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++S+G+  LD  LG GGF  G + ++YGP +SGKTTLAL T   S   G   A+VD E
Sbjct: 1   MLSTGTKSLDSLLG-GGFAPGVLTQVYGPYASGKTTLALQTGLLS---GKKVAYVDTE 54


>gi|297737116|emb|CBI26317.3| unnamed protein product [Vitis vinifera]
          Length = 348

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 94/208 (45%), Gaps = 26/208 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  LD  LG GG     I E +G   SGKT LA HT+  S +         G  A+
Sbjct: 108 ITTGSQALDELLG-GGIETSAITEAFGEFRSGKTQLA-HTLCVSTQLPTSMRGGNGKVAY 165

Query: 101 VDAEHAL--DSIY--ARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149
           +D E     D I   A + G+D    L N++ ++  T E    +   L    + +   ++
Sbjct: 166 IDTEGTFRPDRIVPIAERFGMDAGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLL 225

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           ++DSV AL  R +  G  GE L   Q +L +Q L +LT         +   NQ+      
Sbjct: 226 IVDSVIALF-RVDFTG-RGE-LADRQQKL-AQMLSRLTKIAEEFNVAVYMTNQVIADPGG 281

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
           GV    P+   GG+ L   +++RL  R+
Sbjct: 282 GVFISDPKKPAGGHVLAHAATIRLMFRK 309


>gi|213403772|ref|XP_002172658.1| DNA repair protein RAD51 [Schizosaccharomyces japonicus yFS275]
 gi|212000705|gb|EEB06365.1| DNA repair protein RAD51 [Schizosaccharomyces japonicus yFS275]
          Length = 370

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 96/211 (45%), Gaps = 32/211 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G I E++G   +GK+ +  HT+A + +         G C +
Sbjct: 128 ITTGSKQLDTLLQ-GGVETGSITELFGEFRTGKSQIC-HTLAVTCQLPIDMGGGEGKCLY 185

Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEI----TDMLVRSGAVDI 148
           +D E     +     A + G++    L N+  ++    +  LE+     +M+  S    +
Sbjct: 186 IDTEGTFRPVRLLAVAERYGLNGEEVLDNVAYARAYNADHQLELLQQAANMMAES-RFSL 244

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMK 206
           +V+DS  AL  R +  G  GE    + AR M  A  +R L          +V  NQ+  +
Sbjct: 245 LVVDSCTALY-RTDFSG-RGE----LSARQMHLARFMRTLQRLADEFGIAVVITNQVVAQ 298

Query: 207 I-GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           + G+ F   P+   GGN L   S+ RL +R+
Sbjct: 299 VDGISFNPDPKKPIGGNILAHSSTTRLSLRK 329


>gi|148642671|ref|YP_001273184.1| DNA repair and recombination protein RadB [Methanobrevibacter
           smithii ATCC 35061]
 gi|222445832|ref|ZP_03608347.1| hypothetical protein METSMIALI_01476 [Methanobrevibacter smithii
           DSM 2375]
 gi|166218770|sp|A5UKT8|RADB_METS3 RecName: Full=DNA repair and recombination protein radB
 gi|148551688|gb|ABQ86816.1| DNA repair protein, RadB [Methanobrevibacter smithii ATCC 35061]
 gi|222435397|gb|EEE42562.1| hypothetical protein METSMIALI_01476 [Methanobrevibacter smithii
           DSM 2375]
          Length = 234

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 98/233 (42%), Gaps = 27/233 (11%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           FE    + + S G+D  L  GG  KG + +I+GP  SGK+ ++L       K G    +V
Sbjct: 7   FEDNHKIPTNS-GIDNLLD-GGVEKGTVTQIFGPPGSGKSNISLVLAVNVAKQGKKVVYV 64

Query: 102 DAE-----HALDSIYARKLGVDLKNLLISQPDT---GEQALEITDMLVRSGA--VDIIVI 151
           D E     + +  I        + N+++ +P +     + L+  ++ +R     VD+ V+
Sbjct: 65  DTEGGISINRIKQIAGEDFPKIVNNIIVFEPTSFLEQNENLKTIELWIRKHHDDVDLCVL 124

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DS  AL    +++        G Q  ++++  R    ++       V  NQ+        
Sbjct: 125 DSAVALYRVDDMKSSRLNKELGKQMGILAKIARNYDVAV-------VLTNQIYSSFDDDN 177

Query: 212 GSPETTTGGNALKFYSSVRLDI-------RRVGSIKDKDSI-TGNQTRVKVVK 256
                  GG  L+++S   + +       +RV ++K   SI  G Q   K+V+
Sbjct: 178 KDVVKAVGGTILQYWSKTIIQLERNDEFNKRVATLKRHRSIGEGKQATFKIVE 230


>gi|71745272|ref|XP_827266.1| DNA recombination/repair protein RAD51/Dmc1 [Trypanosoma brucei]
 gi|70831431|gb|EAN76936.1| RAD51/dmc1 protein, putative [Trypanosoma brucei]
 gi|261331479|emb|CBH14473.1| RAD51/dmc1 protein, putative [Trypanosoma brucei gambiense DAL972]
          Length = 349

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 101/228 (44%), Gaps = 39/228 (17%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           V++GS  LD  LG GG     I E +G   +GKT +A HT+  + +         G   +
Sbjct: 112 VTTGSTALDQLLG-GGIESMSITEAFGEFRTGKTQIA-HTLCVTCQLPISMGGGNGKAIY 169

Query: 101 VDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149
           VD E           A + G+D    L N+L+++  T E  + +  M+      D   ++
Sbjct: 170 VDTEATFRPERIKPIAERFGLDVEAVLGNILVARAYTHEHQMHLLSMVAAKMVEDQFSLL 229

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQ--ARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206
           V+DSV AL  R +  G  GE     Q  A+++S  ++     ++    + V+I NQ+   
Sbjct: 230 VVDSVTALF-RVDFSG-RGELAERQQKLAKMLSNMIK-----LAEEYNVAVYITNQVVAD 282

Query: 207 IG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
            G   +    P+   GG+ L   S+ RL +R      RV  I D  S+
Sbjct: 283 PGGASMFVADPKKPIGGHILAHASTTRLSLRKGRGDQRVCKIYDSPSL 330


>gi|585771|sp|P37384|DMC1_LILLO RecName: Full=Meiotic recombination protein DMC1 homolog
 gi|431168|dbj|BAA04845.1| RAD51-like protein [Lilium longiflorum]
          Length = 349

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 96/208 (46%), Gaps = 26/208 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  LD  LG GG    +I E +G   SGKT +A HT+  S +         G  A+
Sbjct: 113 ITTGSQALDELLG-GGIETLQITEAFGEFRSGKTQIA-HTLCVSTQLPVSMHGGNGKVAY 170

Query: 101 VDAEHAL--DSIY--ARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149
           +D E     D I   A + G+D    L N++ ++  T E    +   L    + +   ++
Sbjct: 171 IDTEGTFRPDRIVPIAERFGMDASAVLDNIIYARAYTYEHQYNLLLALAAKMSEEPFRLL 230

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DSV AL  R +  G  GE L   Q +L +Q L +LT         +   NQ+    G 
Sbjct: 231 IVDSVIALF-RVDFSG-RGE-LAERQQKL-AQMLSRLTKIAEEFNVAVYMTNQVIADPGG 286

Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIRR 235
            +    P+   GG+ L   ++VRL +R+
Sbjct: 287 GMFISDPKKPAGGHVLAHAATVRLMLRK 314


>gi|254169110|ref|ZP_04875947.1| hypothetical protein ABOONEI_52 [Aciduliprofundum boonei T469]
 gi|197621949|gb|EDY34527.1| hypothetical protein ABOONEI_52 [Aciduliprofundum boonei T469]
          Length = 243

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 33/149 (22%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA- 103
           + V  +G   LD ALG GGFP+  I  + GP   GKT L++  +A+  + G TC ++   
Sbjct: 16  VSVAPTGIKKLDEALG-GGFPRNGISLVVGPSGIGKTILSMQWLAEGVRNGETCVYISTT 74

Query: 104 ----------------EHALDSIYARKLGVDLKNLLISQPDTGEQALEI---------TD 138
                           + A+D I+   + +  K+L+   P T E+ L+I          +
Sbjct: 75  LPSEAVIAYYGDMKLLKDAVDKIHWYDMYISPKDLI---PFTKEKILKIFHKVMPDFFDE 131

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
            L     +D +V+DS   LT   +I GD+
Sbjct: 132 QLNLKKPIDRLVLDS---LTTIEKIVGDI 157


>gi|253744423|gb|EET00637.1| DNA repair protein RAD51 [Giardia intestinalis ATCC 50581]
          Length = 370

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 97/225 (43%), Gaps = 33/225 (14%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-QSQKTGGTCAFVDA 103
           I  +S+G   LD  LG GG     I E++G   SGKT L  HTIA  +Q  G   A++D 
Sbjct: 136 IRRISTGCSDLDTLLG-GGIESMAITEVFGEFRSGKTQLC-HTIAVTAQLDGSRVAYLDT 193

Query: 104 EHALDSIYARKLG-----------VDLKNLLISQPDTGEQALEITDMLVRSGA---VDII 149
           E    +    K+G           V L  +  ++  T EQ +E+        +     ++
Sbjct: 194 E---GTFRPEKIGPIAERYKLDPTVTLSKIAYARAYTHEQQIELLAAAAEQMSEKKFALL 250

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           +IDS+ AL  R +  G  GE L   Q +L  Q L  L          +   NQ+  ++  
Sbjct: 251 IIDSLTALF-RVDFTG-RGE-LADRQQKL-GQHLASLAKLADEFNIAIFVTNQVMAQVDG 306

Query: 208 GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
             MF + P+   GG+ L   S+ RL +R      RV  I D  S+
Sbjct: 307 AAMFTADPKKPIGGHILAHASTTRLYLRKGRGNNRVAKIYDSPSL 351


>gi|242019042|ref|XP_002429975.1| DNA repair protein rad51, putative [Pediculus humanus corporis]
 gi|212515030|gb|EEB17237.1| DNA repair protein rad51, putative [Pediculus humanus corporis]
          Length = 339

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 29/211 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS------QKTG-GTCA 99
           ++++GS  LD  LG GG   G I EI+G   +GKT L  HT+A +      Q  G G C 
Sbjct: 101 LLTTGSKELDKLLG-GGIETGSITEIFGEFRTGKTQLC-HTLAVTCQLPIDQNGGEGKCL 158

Query: 100 FVDAE-----HALDSIYAR-KLGVD--LKNLLISQP---DTGEQALEITDMLVRSGAVDI 148
           ++D E       L ++  R KL +   L N+ +++    D   Q L +   ++      +
Sbjct: 159 YIDTEGTFRPERLIAVAERFKLSLSDVLDNVAVARAYNTDHQTQLLLMASAMMSESRYAL 218

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQ-ARLMSQALRKLTSSISRSKCILVFINQM--RM 205
           ++IDS  AL  R +  G    S   M  AR +   LR L      +   ++  NQ+  ++
Sbjct: 219 LIIDSATALY-RTDYSGRGELSARQMHLARFLRMCLR-LADEFGVA---VILTNQVVAQV 273

Query: 206 KIGVMFGS-PETTTGGNALKFYSSVRLDIRR 235
               MF + P+   GGN +   S+ RL +R+
Sbjct: 274 DCATMFAADPKKPVGGNIMAHSSTTRLYLRK 304


>gi|303391399|ref|XP_003073929.1| DNA repair protein Rad51 [Encephalitozoon intestinalis ATCC 50506]
 gi|303303078|gb|ADM12569.1| DNA repair protein Rad51 [Encephalitozoon intestinalis ATCC 50506]
          Length = 334

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 104/243 (42%), Gaps = 34/243 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  +D  L  GGF  G I EI+G   +GKT L  HT+A + +        GG   +
Sbjct: 96  LTTGSSEVDKLLN-GGFESGSITEIFGEFRTGKTQLC-HTVAVTCQLPPEQGGGGGKAMY 153

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQP---DTGEQALEITDMLVRSGAVDII 149
           +D E    S      A + G+D    + N+  ++    D   Q L     ++      ++
Sbjct: 154 IDTEGTFRSERLIPIAERFGLDPDEVMDNISYARAYNSDHQSQLLIKASAMMSESKYSVL 213

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK--- 206
           +IDS  AL  R +  G  GE   G +   +++ LR L +     +  ++  NQ+      
Sbjct: 214 IIDSATALY-RTDFSG-RGEL--GARQLHLAKYLRSLVNLAETFRVAVIITNQVVSNVDG 269

Query: 207 -IGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
            +G+  G  +   GGN +   S+ RL +R      R+  I D   +  ++    + +  +
Sbjct: 270 AVGMFAGDIKKPIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPESEAVFAITEQGI 329

Query: 260 ASP 262
             P
Sbjct: 330 NDP 332


>gi|15920796|ref|NP_376465.1| hypothetical protein ST0579 [Sulfolobus tokodaii str. 7]
 gi|15621580|dbj|BAB65574.1| 258aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 258

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 9/83 (10%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY--ARKLGVDL 119
           GG P+G  V + G   +GKT  +LH IA+  + G  C +V  E + DSI   A++   D 
Sbjct: 17  GGIPQGFFVAVTGEPGTGKTIFSLHFIAEGLREGDNCIYVTTEESRDSIVRQAKQFNWDF 76

Query: 120 KNLLISQPDTGEQALEITDMLVR 142
           +  +       E+ L I D L++
Sbjct: 77  EEYM-------EKKLIIIDALMK 92


>gi|147805615|emb|CAN71783.1| hypothetical protein VITISV_028799 [Vitis vinifera]
          Length = 348

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 94/208 (45%), Gaps = 26/208 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  LD  LG GG     I E +G   SGKT LA HT+  S +         G  A+
Sbjct: 108 ITTGSQALDELLG-GGIETSAITEAFGEFRSGKTQLA-HTLCVSTQLPTSMRGGNGKVAY 165

Query: 101 VDAEHAL--DSIY--ARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149
           +D E     D I   A + G+D    L N++ ++  T E    +   L    + +   ++
Sbjct: 166 IDTEGTFRPDRIVPIAERFGMDAGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLL 225

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           ++DSV AL  R +  G  GE L   Q +L +Q L +LT         +   NQ+      
Sbjct: 226 IVDSVIALF-RVDFTG-RGE-LADRQQKL-AQMLSRLTKIAEEFNVAVYMTNQVIADPGG 281

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
           GV    P+   GG+ L   +++RL  R+
Sbjct: 282 GVFISDPKKPAGGHVLAHAATIRLMFRK 309


>gi|19074882|ref|NP_586388.1| DNA REPAIR PROTEIN RAD51 HOMOLOG [Encephalitozoon cuniculi GB-M1]
 gi|19069607|emb|CAD25992.1| DNA REPAIR PROTEIN RAD51 HOMOLOG [Encephalitozoon cuniculi GB-M1]
          Length = 334

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 101/243 (41%), Gaps = 34/243 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  +D  L  GGF  G I EI+G   +GKT L  HT+A + +        GG   +
Sbjct: 96  LTTGSSEVDKLLS-GGFESGSITEIFGEFRTGKTQLC-HTVAVTCQLPPEQGGGGGKAMY 153

Query: 101 VDAEHALDS----IYARKLGVDLKNLL-------ISQPDTGEQALEITDMLVRSGAVDII 149
           +D E    S      A + G+D   ++           D   Q L     ++      ++
Sbjct: 154 IDTEGTFRSERLVPIAERFGLDPNEVMDNISYARAYNSDHQSQLLIKASAMMSESKYSVL 213

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK--- 206
           +IDS  AL  R +  G  GE   G +   +++ LR L +     +  ++  NQ+      
Sbjct: 214 IIDSATALY-RTDFSG-RGEL--GARQLHLAKYLRSLVNLAETFRIAVIITNQVVSNVDG 269

Query: 207 -IGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
            +G+  G  +   GGN +   S+ RL +R      R+  I D   +  ++    + +  +
Sbjct: 270 AVGMFTGDIKKPIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPESEAVFAITEQGI 329

Query: 260 ASP 262
             P
Sbjct: 330 NDP 332


>gi|20094468|ref|NP_614315.1| RadA recombinase [Methanopyrus kandleri AV19]
 gi|19887561|gb|AAM02245.1| RadA recombinase [Methanopyrus kandleri AV19]
          Length = 316

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           +V+ +G  G D  +G GG P G IV +YGP  +GK+  A    A + K G +  ++D E+
Sbjct: 87  DVIPTGIQGFDERMG-GGLPTGVIVGMYGPPGAGKSQFATQVAAHALKEGESVLYIDTEN 145

Query: 106 AL 107
           A 
Sbjct: 146 AF 147


>gi|307594299|ref|YP_003900616.1| Rad51 domain-containing protein [Vulcanisaeta distributa DSM 14429]
 gi|307549500|gb|ADN49565.1| Rad51 domain protein [Vulcanisaeta distributa DSM 14429]
          Length = 327

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 95/217 (43%), Gaps = 31/217 (14%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH-TIAQSQKTGGTCAFVDAEH 105
           ++ +G  GLD A  +GG   G   E  G   +GKT +AL   +A   + G    ++D E 
Sbjct: 94  ILKTGVDGLDSA--VGGLRFGVSHEFAGEFGAGKTIMALQAAVASIGQFGFRVVYIDTEK 151

Query: 106 ALDSIY--------ARKLGVDLKN-----LLISQPDTGEQ-----ALEITDMLVRSGAVD 147
            +D             + GVD +      LLI  P T +       L + D LV S    
Sbjct: 152 TVDQYLGSNLIKNMCSRFGVDYEKVINDYLLIYNPATVDDLEDFIKLRLAD-LVLSNNAR 210

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARL--MSQALRKLTSSISRSKCILVFINQMRM 205
           +I++DS+ AL  RA+  G   E L   Q RL  +   LR+L+    R+  ++V+ NQ+ M
Sbjct: 211 VIIVDSITALY-RAQFRGR--ERLAERQQRLHYVLDWLRRLS---IRAGVLVVYTNQV-M 263

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
                F   +   GGN L    + R  + R    K++
Sbjct: 264 TSPTGFIEVKLPVGGNVLAHTVNARWLMTRASKAKNE 300


>gi|315426193|dbj|BAJ47837.1| DNA repair protein RadA [Candidatus Caldiarchaeum subterraneum]
          Length = 316

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 108/247 (43%), Gaps = 35/247 (14%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI---AQSQKTGG--- 96
           + ++ +++GS  LD  LG GG     I E+ G   SGKT +  HT+   AQ  +  G   
Sbjct: 74  KAMQRLTTGSRALDAMLG-GGVETQAITELIGEFGSGKTQVC-HTLCVMAQLPREQGGLE 131

Query: 97  -TCAFVDAEHALD----SIYARKLGVD----LKNLLI-SQPDTGEQALEITDM--LVRSG 144
            +  ++D E        S  A   G+D    L+N++  S  ++    L + ++   V   
Sbjct: 132 GSAIYIDTEATFRPERISQIAEARGLDPQKILENIIFASVYNSSHLQLTVKELGRYVEKY 191

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              +++IDS+ +   RAE  G    +L   Q RL +  L +L  +       +V  NQ++
Sbjct: 192 KARLVIIDSIISHF-RAEFIGRG--TLAERQQRL-NDLLHRLLRTAQVHNIAVVLTNQVQ 247

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV-KVVKNKMASPF 263
                 FG P   +GG+ L   S+ R+ IRR            N TR+ +++ +    P 
Sbjct: 248 ANPDQFFGDPNKPSGGHVLAHSSTYRIFIRRA----------ANNTRLARIIDSPYHPPT 297

Query: 264 KQVEFDI 270
            +  F I
Sbjct: 298 AEAYFKI 304


>gi|314121610|ref|YP_004063729.1| UvsX RecA-like recombination protein [Enterobacteria phage
           vB_EcoM-VR7]
 gi|313151367|gb|ADR32423.1| UvsX RecA-like recombination protein [Enterobacteria phage
           vB_EcoM-VR7]
          Length = 392

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 128/308 (41%), Gaps = 28/308 (9%)

Query: 7   MNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG---IG 62
           M+I D KS+ ++A+ S++     K            F   +VV +    L+IA+     G
Sbjct: 1   MSIADLKSRLIKASTSKMTATLTKS---------KFFNDKDVVRTKIPMLNIAISGALDG 51

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIA--QSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           G   G  +   GP    K+ + L  ++   ++     C F D+E  +   Y R + VD +
Sbjct: 52  GMQSGLTI-FAGPSKHFKSNMGLTMVSAYMNKYPEAICLFYDSEFGITEAYLRAMKVDPE 110

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVD-----IIVIDSVAALTPRAEIEGDMGESLPG-- 173
             +I  P    + L++ DM+ +  A++     II IDS+  +  + E E  + E + G  
Sbjct: 111 R-VIHTPIQSVEQLKV-DMVNQLEAIERGEKVIIFIDSIGNMASKKETEDALNEKVVGDM 168

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
            +A+ +    R +T   S      V +N     I +   S    TGG  + + +     I
Sbjct: 169 TRAKSLKSLFRIVTPFFSIKDIPCVAVNHTIETIEMY--SKTVMTGGTGVMYSADTVFII 226

Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVD 293
            +    +    + G Q  +   K++M     +   D+ +  GI  +  L+D+ ++   V 
Sbjct: 227 GKRQIKETGKELEGFQFVLNAEKSRMVKEKSKFFIDVKFDGGIDPYSGLLDMAMEIGFVV 286

Query: 294 KSGA-WFS 300
           K    W++
Sbjct: 287 KPKVGWYN 294


>gi|11499679|ref|NP_070921.1| DNA repair and recombination protein RadB [Archaeoglobus fulgidus
           DSM 4304]
 gi|6225909|sp|O28184|RADB_ARCFU RecName: Full=DNA repair and recombination protein radB
 gi|2648436|gb|AAB89159.1| DNA repair protein REC [Archaeoglobus fulgidus DSM 4304]
          Length = 221

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 93/200 (46%), Gaps = 16/200 (8%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           ++ +GS  +D  LG GG   G + +IYG   +GKTTL L  +A++       A++D E  
Sbjct: 5   LIPTGSKCIDSLLG-GGVETGTVTQIYGHGGTGKTTLCL-MLAKNAAEQFKVAYIDTE-G 61

Query: 107 LDSIYARKLGVD---LKNLLISQPDTGEQ---ALEITDMLVRSGAVDIIVIDSVAALTPR 160
           L     R++  D     N+ + +     Q   A++  + L RS  V ++++D   +L  R
Sbjct: 62  LSGERVRQIFGDERLFSNVFVYEVYRFRQQGVAIQEAEKLCRSEKVKLVIVDCFTSLY-R 120

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
           +E+E D  +    ++  L SQ L  L     +    +V  NQM   +G     P    GG
Sbjct: 121 SELEDDRKQ--IKIKRELTSQ-LTFLLGMARKYDVAVVITNQMFTDVGSGVDRP---LGG 174

Query: 221 NALKFYSSVRLDIRRVGSIK 240
            +L+  S V + + R   ++
Sbjct: 175 PSLEHLSKVIIALERSNELR 194


>gi|67477127|ref|XP_654076.1| DNA repair protein RAD51 [Entamoeba histolytica HM-1:IMSS]
 gi|56471096|gb|EAL48690.1| DNA repair protein RAD51, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 366

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 93/209 (44%), Gaps = 26/209 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGGT---CAFV 101
           +++GS  LD  L  GGF  G I E++G   +GKT L        Q   + GGT     ++
Sbjct: 127 ITTGSRELDKLL-CGGFETGSITELFGEFRTGKTQLCHQLCVTCQLGIENGGTEGRAIYI 185

Query: 102 DAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDIIV 150
           D E        +  A K G++    L N+ +++    E  +++  M   L+      +++
Sbjct: 186 DTEGTFRPERLTQIAEKYGLNSEEALNNVAVARAHNTEHQMQLLQMASGLMAKERYGLLI 245

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI--- 207
           IDS  AL  R +  G  GE L   Q  L ++ LR L          +V  NQ+  ++   
Sbjct: 246 IDSATALY-RTDYSG-RGE-LASRQMHL-AKFLRALQRIADEFSVAVVLTNQVVAQVDGQ 301

Query: 208 GVMF-GSPETTTGGNALKFYSSVRLDIRR 235
             MF G  +   GGN +   S+ RL +R+
Sbjct: 302 ASMFGGDTKKPVGGNIIAHASTTRLYLRK 330


>gi|302663930|ref|XP_003023602.1| conserved hypothetical protein [Trichophyton verrucosum HKI 0517]
 gi|291187606|gb|EFE42984.1| conserved hypothetical protein [Trichophyton verrucosum HKI 0517]
          Length = 486

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 32/173 (18%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARKLGVD--- 118
           G  +G I E+ GP  SGKT+LA+ T   + K G T  ++D    +  S + + L  D   
Sbjct: 106 GIRRGEITELSGPRGSGKTSLAMTTAVNALKQGETVIWIDTAGPICMSRFEKMLSRDSTP 165

Query: 119 ------LKNLLISQPDTGEQALEITDMLV---RSGAVDIIVIDSVAAL---TPRAEIEGD 166
                 L+NLL  QP T    L +    +         +IV+DS++ L     R+++   
Sbjct: 166 LETQDRLRNLLHFQPTTLAHLLALICHPIADFPPPNTGLIVVDSISCLFGSEFRSKLPAK 225

Query: 167 MG---ESLPG---------MQARLMSQALRKLTSSI----SRSKCILVFINQM 203
           +G   + LPG          +++L  + +  L+S++    SR  C ++ +N+M
Sbjct: 226 LGSKAKDLPGAGPRANKEAQESKLWWKLIGSLSSNLNALASRFGCAVIVVNEM 278


>gi|14520336|ref|NP_125811.1| DNA repair and recombination protein RadB [Pyrococcus abyssi GE5]
 gi|13878700|sp|Q9V2F6|RADB_PYRAB RecName: Full=DNA repair and recombination protein radB
 gi|5457551|emb|CAB49042.1| radB DNA repair and recombination protein [Pyrococcus abyssi GE5]
          Length = 239

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 24/166 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +++G  GLD  LG GG  +G I+++YGP ++GKTT A+     ++   G  A+VD E   
Sbjct: 13  LTTGVKGLDELLG-GGVARGVILQVYGPFATGKTTFAMQVGLLNE---GKVAYVDTEGGF 68

Query: 108 DSIYARKL----GVD----LKNLLISQP-DTGEQALEITDM-LVRSGAVDIIVIDSVAAL 157
                +++    G+D    L   +I +P D  EQ   I+ +  V S    ++V+DS+ A 
Sbjct: 69  SPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSDKFSLVVVDSLTAH 128

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             RAE   D  E         +++ L+ L     +    ++ +NQ+
Sbjct: 129 Y-RAEGSRDHVE---------LAKQLQVLQWLARKKNVAVIVVNQV 164


>gi|15899197|ref|NP_343802.1| hypothetical protein SSO2452 [Sulfolobus solfataricus P2]
 gi|227826650|ref|YP_002828429.1| circadian clock protein, KaiC [Sulfolobus islandicus M.14.25]
 gi|227829291|ref|YP_002831070.1| Circadian clock protein KaiC central region [Sulfolobus islandicus
           L.S.2.15]
 gi|229578061|ref|YP_002836459.1| circadian clock protein, KaiC [Sulfolobus islandicus Y.G.57.14]
 gi|229583273|ref|YP_002841672.1| putative circadian clock protein, KaiC [Sulfolobus islandicus
           Y.N.15.51]
 gi|229583814|ref|YP_002842315.1| circadian clock protein, KaiC [Sulfolobus islandicus M.16.27]
 gi|238618736|ref|YP_002913561.1| putative circadian clock protein, KaiC [Sulfolobus islandicus
           M.16.4]
 gi|284996648|ref|YP_003418415.1| KaiC domain protein [Sulfolobus islandicus L.D.8.5]
 gi|13815755|gb|AAK42592.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
 gi|227455738|gb|ACP34425.1| Circadian clock protein KaiC central region [Sulfolobus islandicus
           L.S.2.15]
 gi|227458445|gb|ACP37131.1| putative circadian clock protein, KaiC [Sulfolobus islandicus
           M.14.25]
 gi|228008775|gb|ACP44537.1| putative circadian clock protein, KaiC [Sulfolobus islandicus
           Y.G.57.14]
 gi|228013989|gb|ACP49750.1| putative circadian clock protein, KaiC [Sulfolobus islandicus
           Y.N.15.51]
 gi|228018863|gb|ACP54270.1| putative circadian clock protein, KaiC [Sulfolobus islandicus
           M.16.27]
 gi|238379805|gb|ACR40893.1| putative circadian clock protein, KaiC [Sulfolobus islandicus
           M.16.4]
 gi|284444543|gb|ADB86045.1| KaiC domain protein [Sulfolobus islandicus L.D.8.5]
 gi|323473729|gb|ADX84335.1| RecA-like, putative circadian clock protein, KaiC [Sulfolobus
           islandicus REY15A]
 gi|323476381|gb|ADX81619.1| RecA-like, putative circadian clock protein, KaiC [Sulfolobus
           islandicus HVE10/4]
          Length = 262

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 10/97 (10%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G L  D  L  GG P+G  + + G   +GKT  +LH IA+  + G  C +V  E + 
Sbjct: 5   LSTGILDFD-KLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESR 63

Query: 108 DSIY--ARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           DSI   A++   D +  +       E+ L I D L++
Sbjct: 64  DSIIRQAKQFNWDFEEYI-------EKKLIIIDALMK 93


>gi|303244742|ref|ZP_07331072.1| DNA repair and recombination protein RadB [Methanothermococcus
           okinawensis IH1]
 gi|302484876|gb|EFL47810.1| DNA repair and recombination protein RadB [Methanothermococcus
           okinawensis IH1]
          Length = 212

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/206 (20%), Positives = 94/206 (45%), Gaps = 19/206 (9%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD--- 118
           G   +  I +IYGP   GKT + + +     + G    +VD E  L     +++  D   
Sbjct: 8   GNIERKTITQIYGPPGVGKTNIGIISAINFIRKGFKVVYVDTEGGLSIERIKQIAGDEIE 67

Query: 119 --LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
             L NL+I +P++ E+   + + L+    + ++++D +++L  R E+   + E+      
Sbjct: 68  NILNNLIIYEPESFEEQSILLEKLLYIDNLGLVIVDGISSLY-RLELSDKVDEN--TRLN 124

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           R++ + +  L ++  +    ++  NQ+         +    TGG  L+++S   + + ++
Sbjct: 125 RILGRQILTLLNTAKKKNLAVLITNQVSDT-----SNGFKATGGKILEYWSKTIIRMEKL 179

Query: 237 GSI------KDKDSITGNQTRVKVVK 256
             +      K + S  G + + K+VK
Sbjct: 180 NKLRELILEKHRYSEEGERIKYKIVK 205


>gi|304373591|ref|YP_003858336.1| UvsX RecA-like recombination protein [Enterobacteria phage RB16]
 gi|299829547|gb|ADJ55340.1| UvsX RecA-like recombination protein [Enterobacteria phage RB16]
          Length = 381

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 99/239 (41%), Gaps = 13/239 (5%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG--GTCAFVDAEHALDSIYARKLGVDL 119
           GG   G +  I GP    K+ L L  +A   K      C F D+E  +   Y + +GVD 
Sbjct: 51  GGLTSG-LTLIAGPSKHFKSNLGLVAVAAYLKANEDAVCLFYDSEKGVTKSYLKSMGVDP 109

Query: 120 KNLLISQPDTGEQ----ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM--GESLPG 173
             ++ ++  T EQ     +   D L R   V II +DSV     + E++  +   +    
Sbjct: 110 DRVVYTRITTVEQLRNDVVSQLDALERGDKV-IIFVDSVGNTASKKELKDALEDNDKQDM 168

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
            +A+ +    R +T  ++     +V I         M+ S +  +GG  L  YS+    I
Sbjct: 169 TRAKALKGMFRMVTPYLADIDIPMVCICHT-YDTQEMY-SKKVISGGTGL-MYSADTAII 225

Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
                +K+   + G    + V K++      +    + Y  GIS F  L+DL ++ + V
Sbjct: 226 LGKQQVKEGTEVVGYDFIMNVEKSRFVKEKSKFPLHVTYEGGISMFSGLLDLAMEMNFV 284


>gi|34809805|pdb|1PZN|A Chain A, Rad51 (Rada)
 gi|34809806|pdb|1PZN|B Chain B, Rad51 (Rada)
 gi|34809807|pdb|1PZN|C Chain C, Rad51 (Rada)
 gi|34809808|pdb|1PZN|D Chain D, Rad51 (Rada)
 gi|34809809|pdb|1PZN|E Chain E, Rad51 (Rada)
 gi|34809810|pdb|1PZN|F Chain F, Rad51 (Rada)
 gi|34809811|pdb|1PZN|G Chain G, Rad51 (Rada)
          Length = 349

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 103/212 (48%), Gaps = 31/212 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-------QSQKTGGTCAF 100
           +S+GS  LD  LG GG     I E++G   SGKT LA HT+A       +     G+  +
Sbjct: 113 ISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLA-HTLAVXVQLPPEEGGLNGSVIW 170

Query: 101 VDAEHALDSIYARKL----GVD----LKNLLISQP-DTGEQAL-------EITDMLVRSG 144
           +D E+       R++    G+D    LK++ +++  ++  Q L       +I ++L    
Sbjct: 171 IDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQXLLVQQAEDKIKELLNTDR 230

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQM 203
            V ++++DS+ +   R+E    +G      + + +++ L  L   ++    I VF+ NQ+
Sbjct: 231 PVKLLIVDSLTSHF-RSEY---IGRGALAERQQKLAKHLADL-HRLANLYDIAVFVTNQV 285

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           + +    FG P    GG+ L   +++R+ +R+
Sbjct: 286 QARPDAFFGDPTRPIGGHILAHSATLRVYLRK 317


>gi|548664|sp|P36601|RAD51_SCHPO RecName: Full=DNA repair protein rhp51; AltName: Full=RAD51 homolog
 gi|297522|emb|CAA80399.1| Rec A-like Protein [Schizosaccharomyces pombe]
 gi|395378|emb|CAA80879.1| Rad51-like protein [Schizosaccharomyces pombe]
          Length = 365

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 96/212 (45%), Gaps = 32/212 (15%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  L  GG   G I E++G   +GK+ +  HT+A + +         G C 
Sbjct: 123 TITTGSKQLDTLLQ-GGVETGSITELFGEFRTGKSQIC-HTLAVTCQLPIDMGGGEGKCL 180

Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEI----TDMLVRSGAVD 147
           ++D E     +     A + G++    L N+  ++    +  LE+     +M+  S    
Sbjct: 181 YIDTEGTFRPVRLLAVADRYGLNGEEVLDNVAYARAYNADHQLELLQQAANMMSES-RFS 239

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRM 205
           ++V+DS  AL  R +  G  GE    + AR M  A  +R L          +V  NQ+  
Sbjct: 240 LLVVDSCTALY-RTDFSG-RGE----LSARQMHLARFMRTLQRLADEFGIAVVITNQVVA 293

Query: 206 KI-GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           ++ G+ F   P+   GGN L   S+ RL +R+
Sbjct: 294 QVDGISFNPDPKKPIGGNILAHSSTTRLSLRK 325


>gi|19114794|ref|NP_593882.1| recombinase Rhp51 [Schizosaccharomyces pombe 972h-]
 gi|397843|dbj|BAA02963.1| SpRad51 [Schizosaccharomyces pombe]
 gi|7708593|emb|CAB90141.1| recombinase Rhp51 [Schizosaccharomyces pombe]
          Length = 365

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 94/211 (44%), Gaps = 30/211 (14%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  L  GG   G I E++G   +GK+ +  HT+A + +         G C 
Sbjct: 123 TITTGSKQLDTLLQ-GGVETGSITELFGEFRTGKSQIC-HTLAVTCQLPIDMGGGEGKCL 180

Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDI 148
           ++D E     +     A + G++    L N+  ++    +  LE+      ++      +
Sbjct: 181 YIDTEGTFRPVRLLAVADRYGLNGEEVLDNVAYARAYNADHQLELLQQAANMMSESRFSL 240

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMK 206
           +V+DS  AL  R +  G  GE    + AR M  A  +R L          +V  NQ+  +
Sbjct: 241 LVVDSCTALY-RTDFSG-RGE----LSARQMHLARFMRTLQRLADEFGIAVVITNQVVAQ 294

Query: 207 I-GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           + G+ F   P+   GGN L   S+ RL +R+
Sbjct: 295 VDGISFNPDPKKPIGGNILAHSSTTRLSLRK 325


>gi|167387582|ref|XP_001738222.1| DNA repair protein rad51 [Entamoeba dispar SAW760]
 gi|165898654|gb|EDR25461.1| DNA repair protein rad51, putative [Entamoeba dispar SAW760]
          Length = 365

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 93/209 (44%), Gaps = 26/209 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGGT---CAFV 101
           +++GS  LD  L  GGF  G I E++G   +GKT L        Q   + GGT     ++
Sbjct: 126 ITTGSRELDKLL-CGGFETGSITELFGEFRTGKTQLCHQLCVTCQLGIENGGTEGRAIYI 184

Query: 102 DAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDIIV 150
           D E        +  A K G++    L N+ +++    E  +++  M   L+      +++
Sbjct: 185 DTEGTFRPERLTQIAEKYGLNSEEALNNVAVARAHNTEHQMQLLQMASGLMAKERYGLLI 244

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI--- 207
           IDS  AL  R +  G  GE L   Q  L ++ LR L          +V  NQ+  ++   
Sbjct: 245 IDSATALY-RTDYSG-RGE-LASRQMHL-AKFLRALQRIADEFSVAVVLTNQVVAQVDGQ 300

Query: 208 GVMF-GSPETTTGGNALKFYSSVRLDIRR 235
             MF G  +   GGN +   S+ RL +R+
Sbjct: 301 ASMFGGDTKKPVGGNIIAHASTTRLYLRK 329


>gi|222480047|ref|YP_002566284.1| DNA repair and recombination protein RadB [Halorubrum lacusprofundi
           ATCC 49239]
 gi|222452949|gb|ACM57214.1| DNA repair and recombination protein RadB [Halorubrum lacusprofundi
           ATCC 49239]
          Length = 235

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 101/246 (41%), Gaps = 53/246 (21%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH-A 106
           + +G   +D  LG GGF +G + ++YGP ++GKT LAL    +    G    ++D E  +
Sbjct: 5   IPTGCRPVDDLLG-GGFERGVVTQVYGPPAAGKTNLALAAAVEVAAGGDRALYIDTEGLS 63

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI------------------ 148
           +D       G        ++PD  E   EI   LV S A D                   
Sbjct: 64  IDRFEQMAAG------RANRPDVDETVEEIASRLVISEAYDFDDQREAVRDAEELAEEIE 117

Query: 149 -IVIDSVAALTPRAEIEGDM--GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
            IV+DS      R E  GD   GESL     R +++ +  L S   R    +V  NQ   
Sbjct: 118 LIVLDSATGFY-RLERAGDTEGGESL-----RKVAKQVTHLLSLARRHDIAVVITNQ--- 168

Query: 206 KIGVMFGSPET----TTGGNALKFYSS--VRLDI-----RRVGSIKDKDSITGNQTRVKV 254
               +F  P++      GGN L  ++   VR+D      RRV   K +    G+    ++
Sbjct: 169 ----VFTDPDSDRDRALGGNTLNHWTGAIVRVDRFRGGNRRVTLEKHRSKPAGDTATFQI 224

Query: 255 VKNKMA 260
           V + +A
Sbjct: 225 VADGLA 230


>gi|237823442|pdb|2W0M|A Chain A, Crystal Structure Of Sso2452 From Sulfolobus Solfataricus
           P2
          Length = 235

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 10/97 (10%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G L  D  L  GG P+G  + + G   +GKT  +LH IA+  + G  C +V  E + 
Sbjct: 5   LSTGILDFD-KLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESR 63

Query: 108 DSIY--ARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           DSI   A++   D +  +       E+ L I D L++
Sbjct: 64  DSIIRQAKQFNWDFEEYI-------EKKLIIIDALMK 93


>gi|254433945|ref|ZP_05047453.1| KaiA binding family [Nitrosococcus oceani AFC27]
 gi|207090278|gb|EDZ67549.1| KaiA binding family [Nitrosococcus oceani AFC27]
          Length = 452

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 75/176 (42%), Gaps = 33/176 (18%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G I  I GP  +GK+TLA   +AQ+   G   A    E  +D
Sbjct: 215 STGIEKLDKILG-GGLEAGTISLITGPSGTGKSTLASLFVAQAAAQGRKAAIYLFEEEID 273

Query: 109 SIYAR--KLGVDLKNLLISQPDTGEQALEITDML--------------VRSGAVDIIVID 152
           ++  R   L +DLKN L      G+  LE  + L              V    V++IV+D
Sbjct: 274 ALLHRASSLSIDLKNPL----REGQIKLEQVEPLRYLTDEFATLVSQEVEEEGVELIVLD 329

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           S+A       + GD              +AL  L  S+SR    ++ +N++    G
Sbjct: 330 SIAGF--ELTLGGD----------EEAKRALHALAKSLSRRGASVLLVNEIEALTG 373


>gi|254168598|ref|ZP_04875441.1| hypothetical protein ABOONEI_1290 [Aciduliprofundum boonei T469]
 gi|197622432|gb|EDY35004.1| hypothetical protein ABOONEI_1290 [Aciduliprofundum boonei T469]
          Length = 243

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 33/149 (22%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA- 103
           + V  +G   LD ALG GGFP+  I  + GP   GKT L++  +A+  + G TC ++   
Sbjct: 16  VSVAPTGIKKLDEALG-GGFPRNGISLVVGPSGIGKTILSVQWLAEGVRNGETCVYISTT 74

Query: 104 ----------------EHALDSIYARKLGVDLKNLLISQPDTGEQALEI---------TD 138
                           + A+D I+   + +  K+L+   P T E+ L+I          +
Sbjct: 75  LPSEAVIAYYGDMKLLKDAVDKIHWYDMYISPKDLI---PFTKEKILKIFHKVMPDFFDE 131

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
            L     +D +V+DS   LT   +I GD+
Sbjct: 132 QLNLKKPIDRLVLDS---LTTIEKIVGDI 157


>gi|289595711|ref|YP_003482407.1| hypothetical protein Aboo_0033 [Aciduliprofundum boonei T469]
 gi|289533498|gb|ADD07845.1| conserved hypothetical protein [Aciduliprofundum boonei T469]
          Length = 230

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 33/149 (22%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA- 103
           + V  +G   LD ALG GGFP+  I  + GP   GKT L++  +A+  + G TC ++   
Sbjct: 3   VSVAPTGIKKLDEALG-GGFPRNGISLVVGPSGIGKTILSVQWLAEGVRNGETCVYISTT 61

Query: 104 ----------------EHALDSIYARKLGVDLKNLLISQPDTGEQALEI---------TD 138
                           + A+D I+   + +  K+L+   P T E+ L+I          +
Sbjct: 62  LPSEAVIAYYGDMKLLKDAVDKIHWYDMYISPKDLI---PFTKEKILKIFHKVMPDFFDE 118

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
            L     +D +V+DS   LT   +I GD+
Sbjct: 119 QLNLKKPIDRLVLDS---LTTIEKIVGDI 144


>gi|91772886|ref|YP_565578.1| KaiC [Methanococcoides burtonii DSM 6242]
 gi|91711901|gb|ABE51828.1| KaiC domain-containing protein [Methanococcoides burtonii DSM 6242]
          Length = 239

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 49/98 (50%), Gaps = 9/98 (9%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+G   LD  L  GG+PKG+ + I G   SGKT   LH + Q    G  C  V  E
Sbjct: 1   MERISTGIKYLDDKLD-GGYPKGKGILITGVPGSGKTIFGLHALDQGCIDGKKCVMVATE 59

Query: 105 HALDSIY--ARKLGVDLKNLLISQPDTGEQALEITDML 140
            + + I   A  LG+DLK    S  D G   LEI  +L
Sbjct: 60  ESPEDILVQAEMLGLDLK----SHMDNGN--LEILRVL 91


>gi|395377|emb|CAA80878.1| RecA-like protein [Schizosaccharomyces pombe]
          Length = 358

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 94/211 (44%), Gaps = 30/211 (14%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  L  GG   G I E++G   +GK+ +  HT+A + +         G C 
Sbjct: 116 TITTGSKQLDTLLQ-GGVETGSITELFGEFRTGKSQIC-HTLAVTCQLPIDMGGGEGKCL 173

Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDI 148
           ++D E     +     A + G++    L N+  ++    +  LE+      ++      +
Sbjct: 174 YIDTEGTFRPVRLLAVADRYGLNGEEVLDNVAYARAYNADHQLELLQQAANMMSESRFSL 233

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMK 206
           +V+DS  AL  R +  G  GE    + AR M  A  +R L          +V  NQ+  +
Sbjct: 234 LVVDSCTALY-RTDFSG-RGE----LSARQMHLARFMRTLQRLADEFGIAVVITNQVVAQ 287

Query: 207 I-GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           + G+ F   P+   GGN L   S+ RL +R+
Sbjct: 288 VDGISFNPDPKKPIGGNILAHSSTTRLSLRK 318


>gi|152990802|ref|YP_001356524.1| DNA repair protein RadA [Nitratiruptor sp. SB155-2]
 gi|151422663|dbj|BAF70167.1| DNA repair protein RadA/Sms [Nitratiruptor sp. SB155-2]
          Length = 445

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 7/117 (5%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+ +S+GS  LD+ LG GG  +G +V + G    GK+TL L T A   K+G    +V 
Sbjct: 63  EKIQRISTGSEELDLVLG-GGLVEGSLVLVGGSPGVGKSTLLLKTCANVAKSGKKVLYVS 121

Query: 103 AEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           AE +   I  R  ++  +  NL +      E  LE     +++    ++VIDS+  +
Sbjct: 122 AEESASQIKMRADRIDANHPNLFL----LNELILENIVTQLKTDHYGLLVIDSIQTI 174


>gi|77164831|ref|YP_343356.1| KaiC [Nitrosococcus oceani ATCC 19707]
 gi|76883145|gb|ABA57826.1| KaiC [Nitrosococcus oceani ATCC 19707]
          Length = 482

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 78/176 (44%), Gaps = 33/176 (18%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G I  I GP  +GK+TLA   +AQ+   G   A    E  +D
Sbjct: 245 STGIEKLDKILG-GGLEAGTISLITGPSGTGKSTLASLFVAQAAAQGRKAAIYLFEEEID 303

Query: 109 SIYAR--KLGVDLKNLLISQPDTGEQALEITDML--------------VRSGAVDIIVID 152
           ++  R   L +DLKN L      G+  LE  + L              V    V++IV+D
Sbjct: 304 ALLHRASSLSIDLKNPL----REGQIKLEQVEPLRYLTDEFATLVSQEVEEEGVELIVLD 359

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           S+A       + GD        +A+   +AL  L  S+SR    ++ +N++    G
Sbjct: 360 SIAGF--ELTLGGD-------EEAK---RALHALAKSLSRRGASVLLVNEIEALTG 403


>gi|296413167|ref|XP_002836287.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295630101|emb|CAZ80478.1| unnamed protein product [Tuber melanosporum]
          Length = 367

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 3/62 (4%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GT-CAFVDAEH 105
           +S+GS  LD A+G GG  +G+I E+ GP  SGKTTL L + A +  +G GT   ++D  H
Sbjct: 33  ISTGSQELDKAIG-GGLSRGKITELCGPPGSGKTTLGLQSAANALLSGDGTRVVWIDTSH 91

Query: 106 AL 107
            L
Sbjct: 92  PL 93


>gi|18978298|ref|NP_579655.1| DNA repair and recombination protein RadA [Pyrococcus furiosus DSM
           3638]
 gi|13878669|sp|O74036|RADA_PYRFU RecName: Full=DNA repair and recombination protein radA
 gi|3560537|gb|AAC34998.1| recombinase [Pyrococcus furiosus DSM 3638]
 gi|18894122|gb|AAL82050.1| recombinase, radA [Pyrococcus furiosus DSM 3638]
          Length = 349

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 101/217 (46%), Gaps = 41/217 (18%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-------QSQKTGGTCAF 100
           +S+GS  LD  LG GG     I E++G   SGKT LA HT+A       +     G+  +
Sbjct: 113 ISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLA-HTLAVMVQLPPEEGGLNGSVIW 170

Query: 101 VDAEHALDSIYARKL----GVD----LKNLLISQP-DTGEQAL-------EITDMLVRSG 144
           +D E+       R++    G+D    LK++ +++  ++  Q L       +I ++L    
Sbjct: 171 IDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDR 230

Query: 145 AVDIIVIDSVAALTPRAEI--EGDMGESLPGMQARLMSQALRKLTSSISRSKC---ILVF 199
            V ++++DS+ +   R+E    G + E           Q L K  + + R      I VF
Sbjct: 231 PVKLLIVDSLTSHF-RSEYIGRGALAER---------QQKLAKHLADLHRLANLYDIAVF 280

Query: 200 I-NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           + NQ++ +    FG P    GG+ L   +++R+ +R+
Sbjct: 281 VTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRK 317


>gi|312882442|ref|ZP_07742183.1| hypothetical protein VIBC2010_18199 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369842|gb|EFP97353.1| hypothetical protein VIBC2010_18199 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 226

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 2/105 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           +  +G   LD  L  GGFPK  ++E+  P   G+  L L  I  + +    C F+     
Sbjct: 26  IHPTGHKKLDSTLN-GGFPKHGVIEVKSPSGIGELRLLLPHIKNTSQDR-LCVFIQPPGY 83

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           L +     LG++  N+L+  P+  + AL   +  +RSGA   +++
Sbjct: 84  LCTEQLVSLGINANNILLIYPENEQHALWAAEQCLRSGACSNVLL 128


>gi|193603671|ref|XP_001948893.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Acyrthosiphon
           pisum]
          Length = 340

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 103/213 (48%), Gaps = 35/213 (16%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS------QKTG-GTCAF 100
           +++GS  LD  LG GG   G I EI+G   +GKT L  HT+A +      Q  G G C +
Sbjct: 103 LTTGSKELDRLLG-GGIETGSITEIFGEFRTGKTQLC-HTLAVTCQLPIGQNGGEGKCLY 160

Query: 101 VDAE-----HALDSIYARK--LGVD-LKNLLISQP-DTGEQALEITDMLVRSGAV----- 146
           +D E       L S+  R   +G D L N+  ++  +T  Q    T +L+++GA+     
Sbjct: 161 IDTEGTFRPERLLSVAERYQLVGSDVLDNIACARAYNTDHQ----TQLLLQAGAMMAESR 216

Query: 147 -DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
             ++++DS  AL  R +  G  GE L   Q  L ++ LR L          +V  NQ+  
Sbjct: 217 YALLIVDSAMALY-RTDYSG-RGE-LSARQNHL-ARFLRMLLRLADEFGVAVVITNQVVA 272

Query: 206 KI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           ++    MF + P+   GGN +   S+ RL +R+
Sbjct: 273 QVDGASMFAADPKKPVGGNIMAHASTTRLYLRK 305


>gi|302348958|ref|YP_003816596.1| predicted ATPase [Acidilobus saccharovorans 345-15]
 gi|302329370|gb|ADL19565.1| predicted ATPase [Acidilobus saccharovorans 345-15]
          Length = 263

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 51/109 (46%), Gaps = 17/109 (15%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+G LG+D  L  GG P+G  V + G   +GKT  ALH   Q  K      +V  E
Sbjct: 5   IERLSTGVLGIDRMLA-GGIPRGFFVAVVGEPGTGKTVFALHYAWQGIKDNDKVIYVTTE 63

Query: 105 HALDSIY--ARKLGVDLKN------------LLISQPDTGEQALEITDM 139
            + +SI   A+   +DL              LL SQ D  E +LE  D+
Sbjct: 64  ESRESIIKQAKMFNMDLDKAVDEGKAIIIDALLKSQND--EWSLEEVDV 110


>gi|21229110|ref|NP_635032.1| putative resolvase/recombinase [Methanosarcina mazei Go1]
 gi|20907667|gb|AAM32704.1| putative resolvase/recombinase [Methanosarcina mazei Go1]
          Length = 238

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E + +G  GLD+ +  GG+P+G+ + + GP  SGKT L LH + +S + G  C  V   
Sbjct: 1   MENLPTGVEGLDLLMD-GGYPRGKSILVTGPPGSGKTILGLHFLHRSCQDGRKCILVLTR 59

Query: 105 HALDSIY--ARKLGVDL 119
              + +   A  LG+ L
Sbjct: 60  ELTEDVLTQAHSLGIGL 76


>gi|289579772|ref|YP_003478238.1| DNA repair and recombination protein RadB [Natrialba magadii ATCC
           43099]
 gi|289529325|gb|ADD03676.1| DNA repair and recombination protein RadB [Natrialba magadii ATCC
           43099]
          Length = 275

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           + +G   +D  LG GGF +G + ++YGP ++GKT LAL    ++   GGT  ++D E
Sbjct: 6   LPTGCGPVDELLG-GGFERGTVTQLYGPPAAGKTNLALSAAVETAVEGGTVVYIDTE 61


>gi|91078458|ref|XP_967492.1| PREDICTED: similar to Dmc1 homolog [Tribolium castaneum]
 gi|270004852|gb|EFA01300.1| DMC1/LIM15 [Tribolium castaneum]
          Length = 356

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 115/265 (43%), Gaps = 42/265 (15%)

Query: 6   EMNIVDKSKALEA----ALSQIQRVYGK----GAIMQLGSQGSIFEGIEVVSSGSLGLDI 57
           +M   DK  AL++     +S+IQ + G        M         + +  +S+GS  LD 
Sbjct: 63  QMTTTDKLLALKSFNPSKVSKIQEICGNISFSNRFMTAFEVSEACKQVFKISTGSANLDK 122

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK------TGGTCAFVDAEHALDSIY 111
            LG GG     I +++G   SGKT +A HT+  + +      +GG   F+D E +     
Sbjct: 123 LLG-GGVESMSITQVFGEAGSGKTQIA-HTLCVTTQIPTEDYSGGKVMFIDTERSFRPNR 180

Query: 112 ARKLGVD--------LKNLLISQPDTGEQALEI-TDMLVR----SGAVDIIVIDSVAALT 158
            R++           L+N+L  +    E   +I  ++ V+    +G   ++++DS+ AL 
Sbjct: 181 IRQIARRFHLSEDSVLQNILYIRAYNSEHQYQILKNVAVKFHEDTGVFKLLIVDSIIAL- 239

Query: 159 PRAEIEGD-MGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMKIGVMF----- 211
                  D MG  +   + + +++ +  L   IS    + VFI NQ+   +   F     
Sbjct: 240 ----FRNDFMGRGVLLNRQQKLAETM-SLLKKISEEYNVAVFITNQVTTSMNNKFPLLTI 294

Query: 212 GSPETTTGGNALKFYSSVRLDIRRV 236
           G      GGN L   S+ R+ +R++
Sbjct: 295 GDDVKPVGGNILAHSSTTRVALRKL 319


>gi|305663856|ref|YP_003860144.1| DNA repair and recombination protein RadA [Ignisphaera aggregans
           DSM 17230]
 gi|304378425|gb|ADM28264.1| DNA repair and recombination protein RadA [Ignisphaera aggregans
           DSM 17230]
          Length = 316

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 94/205 (45%), Gaps = 22/205 (10%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----LALHTIAQSQKTGGT--CAFV 101
           +++GS  LD  LG GG     I E++G   SGKT     LA++     +K G +    ++
Sbjct: 83  ITTGSKNLDTLLG-GGIEVKTITELFGEFGSGKTQICHQLAVNVQLPPEKGGLSKRAIYI 141

Query: 102 DAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVDIIV 150
           D E           AR +G++    ++N+L  +    +  + I + L   +    + ++V
Sbjct: 142 DTEGTFRWERIEAMARAIGMNPDEAMENILYVRAVNSDHQMAIAEELKEIIPKENIGLVV 201

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DS+     RAE  G   E+L   Q +L ++ L +L S        +V  NQ+  +  V 
Sbjct: 202 VDSITGHF-RAEYPGR--ENLAVRQQKL-NRHLHQLMSIAELFDVAVVVTNQVMARPDVF 257

Query: 211 FGSPETTTGGNALKFYSSVRLDIRR 235
           +G P    GG+ L     +R+ +++
Sbjct: 258 YGDPTVAIGGHVLYHAPGIRVQLKK 282


>gi|115488638|ref|NP_001066806.1| Os12g0497300 [Oryza sativa Japonica Group]
 gi|18874073|dbj|BAB85492.1| Rad51 [Oryza sativa Japonica Group]
 gi|18874075|dbj|BAB85493.1| Rad51 [Oryza sativa Japonica Group]
 gi|108862704|gb|ABA98592.2| DNA repair protein RAD51, putative, expressed [Oryza sativa
           Japonica Group]
 gi|113649313|dbj|BAF29825.1| Os12g0497300 [Oryza sativa Japonica Group]
          Length = 341

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 95/211 (45%), Gaps = 32/211 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           V++GS  LD  L  GG   G I EIYG   SGKT L  HT+  + +         G   +
Sbjct: 105 VTTGSRELDKILD-GGIETGSITEIYGEFRSGKTQLC-HTLCVTCQLPLDQGGGEGKALY 162

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQP-DTGEQA---LEITDMLVRSGAVDI 148
           +DAE           A + G++    L+N+  ++  +T  Q+   LE   M+V +    I
Sbjct: 163 IDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVET-RFAI 221

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMK 206
           +++DS  AL  R +  G  GE    + AR M  A  LR L          +V  NQ+  +
Sbjct: 222 MIVDSATALY-RTDFSG-RGE----LSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQ 275

Query: 207 I--GVMFGSPETTTGGNALKFYSSVRLDIRR 235
           +    MFG      GGN +   S+ RL +R+
Sbjct: 276 VDGAAMFGPQIKPIGGNIMAHASTTRLFLRK 306


>gi|331239939|ref|XP_003332621.1| DNA repair protein RAD51 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309311611|gb|EFP88202.1| DNA repair protein RAD51 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 343

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 98/248 (39%), Gaps = 45/248 (18%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG------GTCAFV 101
           +++GS  LD  LG GG     I E YG   +GK+ L  H     Q         G C F+
Sbjct: 105 ITTGSKNLDTMLG-GGIDTQSITEFYGEFRTGKSQLCHHLAVSCQLPANMGGGEGKCMFI 163

Query: 102 DAEHALDS----IYARKLGVD----LKNLLISQP---DTGEQALEITDMLVRSGAVDIIV 150
           D E           A + G+D    L N+ +++    D   Q L     L+      I++
Sbjct: 164 DTEGTFRPERILAIAERYGMDGEEVLNNIAVARAYNSDHQSQLLREASRLMTLSRFAILI 223

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DS  AL  R +  G  GE L   QA L ++ LR       +    +V  NQ       +
Sbjct: 224 VDSATALY-RTDYSG-RGE-LADRQAHL-AKFLRGCLGLAEQFGIAVVVTNQ-------V 272

Query: 211 FGSPETTT----------GGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKV 254
             SP++            GGN +   S+ RL  R      R+  + D   +   +T++ +
Sbjct: 273 MSSPDSGPGGGGLGKAPIGGNIMAHSSTTRLQFRKGRETTRIVKLIDSPCLPEGETKMAI 332

Query: 255 VKNKMASP 262
            +N +  P
Sbjct: 333 YQNGIGDP 340


>gi|253741848|gb|EES98708.1| Dmc1b [Giardia intestinalis ATCC 50581]
          Length = 368

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 106/237 (44%), Gaps = 51/237 (21%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGT 97
           ++ +S+G    +  LG GG     I E++G   +GKT L  HT+A + +        GG 
Sbjct: 128 VKRLSTGCTDFNTLLG-GGVETMSITEVFGEFRTGKTQLC-HTLAVTAQLPVSKGGGGGK 185

Query: 98  CAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDMLVR---SGAV 146
             ++D E        +  A + G++    L N+++++  T EQ +E    L +       
Sbjct: 186 TVYIDTEGTFRPEKVAPIAERFGLNPKKALDNIIVARVYTHEQQIECITALPKLMIESQF 245

Query: 147 DIIVIDSVAAL-----TPRAEI---EGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            +++IDS+ AL     T R E+   +  +G+ L G         L KL    +    + +
Sbjct: 246 ALVIIDSITALFRVDFTGRGELADRQQKLGQHLAG---------LAKLADEFN----LAI 292

Query: 199 FI-NQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
           F+ NQ+  ++    MF + P+   GG+ L   S+ RL +R      RV  I D  S+
Sbjct: 293 FVTNQVMAQVDGAAMFTADPKKPIGGHILAHASTTRLYLRKGRGDTRVAKIYDSPSL 349


>gi|323337982|gb|EGA79221.1| Rad51p [Saccharomyces cerevisiae Vin13]
          Length = 334

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 23/208 (11%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  LG GG   G I E++G   +GK+ L  HT+A + +         G C 
Sbjct: 93  CLTTGSKNLDTLLG-GGVETGSITELFGEFRTGKSQLC-HTLAVTCQIPLDIGGGEGKCL 150

Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDI 148
           ++D E     +     A++ G+D    L N+  ++    +  L + D    ++      +
Sbjct: 151 YIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSL 210

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IV+DSV AL  R +  G    S   M      +AL++L      +  ++      ++  G
Sbjct: 211 IVVDSVMALY-RTDFSGRGELSARQMHLAKFMRALQRLADQFGVAV-VVTNQVVAQVDGG 268

Query: 209 VMFGS-PETTTGGNALKFYSSVRLDIRR 235
           + F   P+   GGN +   S+ RL  ++
Sbjct: 269 MAFNPDPKKPIGGNIMAHSSTTRLGFKK 296


>gi|222154117|gb|ACM47238.1| RAD51 recombination protein [Triticum aestivum]
          Length = 343

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 94/221 (42%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           V++GS  LD  L  GG   G I E+YG   SGKT L  HT+  + +         G   +
Sbjct: 106 VTTGSRELDKILE-GGIETGSITELYGEFRSGKTQLC-HTLCVTCQLPLDQGGGEGKALY 163

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +DAE                      L+++ YAR    D ++ L+         LE   M
Sbjct: 164 IDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL---------LEAASM 214

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           +V +    ++VIDS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 215 MVET-RFALMVIDSATALY-RTDFSG-RGE----LSARQMHLAKFLRSLQKLADEFGVAV 267

Query: 198 VFINQMRMKI--GVMFGSPE-TTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++  G MF  P+    GGN +   S+ RL +R+
Sbjct: 268 VISNQVVAQVDGGAMFAGPQIKPIGGNIMAHASTTRLYLRK 308


>gi|330915672|ref|XP_003297116.1| hypothetical protein PTT_07429 [Pyrenophora teres f. teres 0-1]
 gi|311330355|gb|EFQ94774.1| hypothetical protein PTT_07429 [Pyrenophora teres f. teres 0-1]
          Length = 338

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 100/222 (45%), Gaps = 34/222 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQK----TGGTCAF 100
           +S+GS  LD  LG GGF    I E++G    GKT L+ HT   I Q  K      G  A+
Sbjct: 99  ISTGSKALDAVLG-GGFQTMSISEVFGEFRCGKTQLS-HTMSVITQLPKDMGGAEGKVAY 156

Query: 101 VDAEHALD----SIYARKLGVDLK----NLLISQPDTGEQALEITDMLVR---SGAVDII 149
           +D E        +  A + GVD +    N+  ++    E  +E+ + +     S    ++
Sbjct: 157 IDTEGTFRPERIAQIAERFGVDPETAQDNITYARAVNSEHQMELLNKVAEFFVSNEYRLL 216

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           +IDS+ AL  R +  G  GE L   Q +L +Q L KLT         ++  NQ++   G 
Sbjct: 217 IIDSIMALF-RVDYTG-RGE-LNERQQKL-NQFLSKLTHVAEEFNVAVLLTNQVQSDPGA 272

Query: 209 -VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241
             +F   +     GG+ L   S+ R+ +R      RV  I+D
Sbjct: 273 SALFAGADGRKPVGGHILAHASATRILLRKGRGEERVAKIQD 314


>gi|289596168|ref|YP_003482864.1| DNA repair and recombination protein RadB [Aciduliprofundum boonei
           T469]
 gi|289533955|gb|ADD08302.1| DNA repair and recombination protein RadB [Aciduliprofundum boonei
           T469]
          Length = 227

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 90/200 (45%), Gaps = 19/200 (9%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + SG   +D  L  GGF +G I E+YG   SGKT + L T     K G    ++D E   
Sbjct: 4   IKSGCESIDSLLN-GGFERGCITELYGEAGSGKTNICLSTAINVAKEGHYVIYIDTEGIS 62

Query: 108 DSIYARKLGVD--LKNLLISQPDTGEQALEITD----MLVRSGAVDIIVIDSVAALTPRA 161
              +++  G +   K +L  +     Q  EI +    ++ +   + ++++DS+     RA
Sbjct: 63  MERFSQLGGNEDIAKRILFYKVYKFSQQAEIIERAINLVEKRNDIILLIVDSMTEFY-RA 121

Query: 162 E--IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMKIGVMFGSPETTT 218
           E  +E D+        A  +S     + +SI+R K I V I NQ+ M        P    
Sbjct: 122 ERGVEEDLSAKKRSSLAWQLS-----ILNSIARKKNIAVIITNQVYMDTTTKELRP---I 173

Query: 219 GGNALKFYSSVRLDIRRVGS 238
           GG+ L   +   + +R++G+
Sbjct: 174 GGHTLHHNAKTIIFLRKIGN 193


>gi|116754195|ref|YP_843313.1| DNA repair and recombination protein RadA [Methanosaeta thermophila
           PT]
 gi|116665646|gb|ABK14673.1| DNA repair and recombination protein RadA [Methanosaeta thermophila
           PT]
          Length = 322

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 98/217 (45%), Gaps = 35/217 (16%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS   D  LG GG     IVE+YG   SGKT +A H +A + +         G+   
Sbjct: 80  ITTGSRNFDELLG-GGMETQAIVELYGEFGSGKTQVA-HQLAVNVQLPPELGGLNGSAII 137

Query: 101 VDAEHA------------LDSIYARKLGVD--LKNLLISQPDT-------GEQALEITDM 139
           +D E+             L +I  R+   +  LKN+ +++           E A+E+ + 
Sbjct: 138 IDTENTFRPERISQMVMGLRAIDDREWRPEDFLKNIHVARAYNSNHQILLAESAMELAES 197

Query: 140 LVRS-GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           L  +   V ++++DSV A   RAE  G    +L   Q +L ++ L  L      +  +++
Sbjct: 198 LRETEHPVRLLIVDSVTAHF-RAEYVGR--GTLADRQQKL-NKHLHDLMRFADLNNALIL 253

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
             NQ+  K    FG P    GG+ L   ++ R+ +R+
Sbjct: 254 VTNQVMAKPDTFFGDPTKPVGGHVLGHTATFRVYLRK 290


>gi|255633658|gb|ACU17188.1| unknown [Glycine max]
 gi|255646013|gb|ACU23494.1| unknown [Glycine max]
          Length = 76

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 28/42 (66%)

Query: 291 IVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           IV K G+W+ +   RLGQGR+ +  +L+EN  + E IE ++R
Sbjct: 4   IVSKKGSWYRYGDHRLGQGRDKAIQYLKENTHLLEEIEKVVR 45


>gi|312879844|ref|ZP_07739644.1| DNA repair protein RadA [Aminomonas paucivorans DSM 12260]
 gi|310783135|gb|EFQ23533.1| DNA repair protein RadA [Aminomonas paucivorans DSM 12260]
          Length = 447

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 9/112 (8%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VSSG   LD  LG GG+  G +V + G    GK+TL L +     +TG    +V  E + 
Sbjct: 66  VSSGLEELDRVLG-GGWLAGGVVLLGGEPGVGKSTLLLQSCCAMAETGEKVLYVSGEESA 124

Query: 108 D--SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
              ++ AR+LG++ +NL +   D   +ALE  D          +V DSV AL
Sbjct: 125 SQLALRARRLGLETRNLSLLSTDDVTEALEEAD------PYAFVVFDSVQAL 170


>gi|76803183|ref|YP_331278.1| KaiC-like transcriptional regulator 3 [Natronomonas pharaonis DSM
           2160]
 gi|76559048|emb|CAI50646.1| probable KaiC-like transcriptional regulator 3 [Natronomonas
           pharaonis DSM 2160]
          Length = 231

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VSSG  G D  L  GGFP GR+  + GP  SGKTT +   +    K G +C F+    + 
Sbjct: 3   VSSGVAGFD-DLVAGGFPVGRLYVLSGPPGSGKTTFSAQFLVDGAKNGESCLFISMHESR 61

Query: 108 DSIYARKLGVDL 119
             I     G D+
Sbjct: 62  ADIAHDMSGYDI 73


>gi|197092359|gb|ACH42252.1| RAD51A recombination protein [Triticum aestivum]
 gi|222154121|gb|ACM47240.1| RAD51 recombination protein [Triticum aestivum]
          Length = 342

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 94/221 (42%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           V++GS  LD  L  GG   G I E+YG   SGKT L  HT+  + +         G   +
Sbjct: 105 VTTGSRELDKILE-GGIETGSITELYGEFRSGKTQLC-HTLCVTCQLPLDQGGGEGKALY 162

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +DAE                      L+++ YAR    D ++ L+         LE   M
Sbjct: 163 IDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL---------LEAASM 213

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           +V +    ++VIDS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 214 MVET-RFALMVIDSATALY-RTDFSG-RGE----LSARQMHLAKFLRSLQKLADEFGVAV 266

Query: 198 VFINQMRMKI--GVMFGSPE-TTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++  G MF  P+    GGN +   S+ RL +R+
Sbjct: 267 VISNQVVAQVDGGAMFAGPQIKPIGGNIMAHASTTRLYLRK 307


>gi|294495001|ref|YP_003541494.1| DNA repair and recombination protein RadB [Methanohalophilus mahii
           DSM 5219]
 gi|292666000|gb|ADE35849.1| DNA repair and recombination protein RadB [Methanohalophilus mahii
           DSM 5219]
          Length = 225

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 93/212 (43%), Gaps = 14/212 (6%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           ++++SG   +D  LG GGF  G + +IYG   SGKT L L               VD E 
Sbjct: 6   DLLTSGCKPIDELLG-GGFEPGVVTQIYGESGSGKTNLCLQLAVYCVNNNKKAILVDTEA 64

Query: 106 ALDSIYARKLGVDLK----NLLISQPDTGEQALEITDMLVRSGAVDI--IVIDSVAALTP 159
                + +  G + +    N++I +P + E+       + +  A +I  I++DS  A   
Sbjct: 65  ISPERFRQIAGENAREIAQNIIIYEPHSFEEQYSAIHEIEKISAQNIGLIIVDSATAYY- 123

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           R  +E D  +S+     R ++  +  L     +   ++V  NQ+   IG     P    G
Sbjct: 124 RFGLE-DEEKSI--RTRRELANQIGYLHGLARKRGIVVVITNQVYSDIGTGKLKP---VG 177

Query: 220 GNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           G+ ++  S   + + R G  K K ++  +++R
Sbjct: 178 GSTVEHMSKTIIQLERTGENKRKANLLKHRSR 209


>gi|307352867|ref|YP_003893918.1| DNA repair and recombination protein RadA [Methanoplanus
           petrolearius DSM 11571]
 gi|307156100|gb|ADN35480.1| DNA repair and recombination protein RadA [Methanoplanus
           petrolearius DSM 11571]
          Length = 323

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 88/204 (43%), Gaps = 30/204 (14%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIY 111
           AL  GG     I+E YG   SGK+ +A      +Q         G+  ++D E+      
Sbjct: 91  ALMGGGLETMSIIEFYGEFGSGKSQIAHQMAVNAQLPEDVGGLNGSVIYIDTENTFRPER 150

Query: 112 ARKL--GVDLK----------NLLISQPDTGEQALEITDMLVRSGA--------VDIIVI 151
            R++  G+DL+          ++ +++  T +  + + D +    A        + +IV+
Sbjct: 151 IRQMVEGLDLEDVPSPEEFLEHIHVAEAFTSDHQMLLLDNVRELAAELKETDKPLKLIVV 210

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DS+ A   RAE  G    SL   + + +++ +  L         +++  NQ++    V F
Sbjct: 211 DSLMAHF-RAEYAGRGTLSL---RQQKLNKHMYDLAKLAKEFNAVVIVTNQVQSNPAVFF 266

Query: 212 GSPETTTGGNALKFYSSVRLDIRR 235
           G P   TGGN +   S  R+ +R+
Sbjct: 267 GDPTKPTGGNIVGHASKFRVYLRK 290


>gi|288869574|ref|ZP_05975040.2| DNA repair and recombination protein RadB [Methanobrevibacter
           smithii DSM 2374]
 gi|288861581|gb|EFC93879.1| DNA repair and recombination protein RadB [Methanobrevibacter
           smithii DSM 2374]
          Length = 234

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 98/233 (42%), Gaps = 27/233 (11%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           FE    + + S G+D  L  GG  KG + +I+GP  SGK+ ++L       K G    +V
Sbjct: 7   FEDNHKIPTNS-GIDNLLD-GGVEKGTVTQIFGPPGSGKSNISLVLAVNVAKQGKKVVYV 64

Query: 102 DAE-----HALDSIYARKLGVDLKNLLISQPDT---GEQALEITDMLVRSGA--VDIIVI 151
           D E     + +  I        + N+++ +P +     + L+  ++ +R     VD+ V+
Sbjct: 65  DTEGGISINRIKQIAGEDFPKIVNNIIVFEPTSFLEQNENLKTIELWIRKHHDDVDLCVL 124

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DS  AL    +++        G Q  ++++  R    ++       V  NQ+        
Sbjct: 125 DSAVALYRVDDMKSSRLNKELGKQMGILAKIARNYDVAV-------VLTNQIYSSFDDDN 177

Query: 212 GSPETTTGGNALKFYSSVRLDI-------RRVGSIKDKDSI-TGNQTRVKVVK 256
                  GG  L+++S   + +       +RV ++K   S+  G Q   K+V+
Sbjct: 178 KDVVKAVGGTILQYWSKTIIQLERNDEFNKRVATLKRHRSMGEGKQVTFKIVE 230


>gi|91772777|ref|YP_565469.1| KaiC [Methanococcoides burtonii DSM 6242]
 gi|91711792|gb|ABE51719.1| KaiC domain-containing protein [Methanococcoides burtonii DSM 6242]
          Length = 301

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 9/119 (7%)

Query: 3   YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
           Y KE+    K+  LE AL  +     K  I       +I + I+ VS+G  GLD  L  G
Sbjct: 23  YEKELGA--KNLVLEKALLSLDSTKFKSKI----DINNIDKVIKRVSTGVAGLDDMLE-G 75

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YARKLGVDL 119
           G PKG  V + GP  +GKTTL +  + +  K    C F   E  +  +  +  + G DL
Sbjct: 76  GVPKGSSVIVTGPPGTGKTTLCMQFLMEGVKADEKCLFFSFEERIPQLIQHFMRFGWDL 134


>gi|325190521|emb|CCA25020.1| DNA repair protein RAD51 putative [Albugo laibachii Nc14]
          Length = 342

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 90/211 (42%), Gaps = 30/211 (14%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ----KTG--GTCAF 100
            +S+GS  LD  L  GGF  G I E++G   +GKT L        Q    + G  G   F
Sbjct: 105 TLSTGSSALDELLK-GGFETGSITELFGEFRTGKTQLCHQLCVTCQLPVDRGGGEGKALF 163

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------ 146
           +D E           A + G+D    L N+  ++    E  ++   +L+++ A+      
Sbjct: 164 IDTEGTFRPQRLVAIAERYGLDGDSVLDNVAFARAYNSEHQMQ---LLIQASAMMAESRY 220

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++++DS  AL  R +  G  GE L   Q  L ++ LR LT         +V  NQM   
Sbjct: 221 ALVIVDSATALF-RTDFSG-RGE-LAARQQEL-AKFLRALTKMADEFGVAVVITNQMTAN 276

Query: 207 I--GVMFGSPETTTGGNALKFYSSVRLDIRR 235
              G+    P    GGN +   S  RL +R+
Sbjct: 277 PDSGMFAKDPLQPIGGNIMAHASCTRLRLRK 307


>gi|30578221|gb|AAP35107.1|AF486821_1 Rad51 [Entamoeba histolytica]
          Length = 366

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 96/211 (45%), Gaps = 30/211 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGGT---CAFV 101
           +++GS  LD  L  GGF  G I E++G   +GKT L        Q   + GGT     ++
Sbjct: 127 ITTGSRELDKLL-CGGFETGSITELFGEFRTGKTQLCHQLCVTCQLGIENGGTEGRAIYI 185

Query: 102 DAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDIIV 150
           D E        +  A K G++    L N+ +++    E  + +  M   L+      +++
Sbjct: 186 DTEGTFRPERLTQIAEKYGLNSEEALNNVAVARAHNTEHQMPLLQMASGLMAKERYGLLI 245

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMS--QALRKLTSSISRSKCILVFINQMRMKI- 207
           IDS  AL  R +  G  GE L   Q  L+   +AL+++    S +   +V  NQ+  ++ 
Sbjct: 246 IDSATALY-RTDYSG-RGE-LASRQMHLVKFLRALQRIADEFSVA---VVLTNQVVAQVD 299

Query: 208 --GVMF-GSPETTTGGNALKFYSSVRLDIRR 235
               MF G  +   GGN +   S+ RL +R+
Sbjct: 300 GQASMFGGDTKKPVGGNIIAHASTTRLYLRK 330


>gi|159119566|ref|XP_001710001.1| Dmc1b [Giardia lamblia ATCC 50803]
 gi|30578213|gb|AAP35103.1|AF485824_1 DMC1-B [Giardia intestinalis]
 gi|33667820|gb|AAQ24510.1| Dmc1b [Giardia intestinalis]
 gi|157438119|gb|EDO82327.1| Dmc1b [Giardia lamblia ATCC 50803]
          Length = 368

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 105/237 (44%), Gaps = 51/237 (21%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGT 97
           ++ +S+G    +  LG GG     I E++G   +GKT L  HT+A + +        GG 
Sbjct: 128 VKRLSTGCADFNALLG-GGVETMSITEVFGEFRTGKTQLC-HTLAVTAQLPVSKGGGGGK 185

Query: 98  CAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDMLVR---SGAV 146
             ++D E        +  A + G++    L N+++++  T EQ +E    L +       
Sbjct: 186 TVYIDTEGTFRPEKVAPIAERFGLNPKKALDNIMVARVYTHEQQIECITALPKLMVENQF 245

Query: 147 DIIVIDSVAAL-----TPRAEI---EGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            ++++DS+ AL     T R E+   +  +G+ L G         L KL    +    + V
Sbjct: 246 SLVIVDSLTALFRVDFTGRGELADRQQKLGQHLSG---------LAKLADEFN----LAV 292

Query: 199 FI-NQMRMKI--GVMF-GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
           F+ NQ+  ++    MF   P+   GG+ L   S+ RL +R      RV  I D  S+
Sbjct: 293 FVTNQVMAQVDGAAMFTADPKKPIGGHILAHASTTRLYLRKGRGDTRVAKIYDSPSL 349


>gi|151944813|gb|EDN63072.1| radiation sensitive protein [Saccharomyces cerevisiae YJM789]
 gi|256271447|gb|EEU06501.1| Rad51p [Saccharomyces cerevisiae JAY291]
 gi|323305264|gb|EGA59011.1| Rad51p [Saccharomyces cerevisiae FostersB]
          Length = 400

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 23/208 (11%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  LG GG   G I E++G   +GK+ L  HT+A + +         G C 
Sbjct: 159 CLTTGSKNLDTLLG-GGVETGSITELFGEFRTGKSQLC-HTLAVTCQIPLDIGGGEGKCL 216

Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDI 148
           ++D E     +     A++ G+D    L N+  ++    +  L + D    ++      +
Sbjct: 217 YIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSL 276

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IV+DSV AL  R +  G    S   M      +AL++L      +  ++      ++  G
Sbjct: 277 IVVDSVMALY-RTDFSGRGELSARQMHLAKFMRALQRLADQFGVAV-VVTNQVVAQVDGG 334

Query: 209 VMFGS-PETTTGGNALKFYSSVRLDIRR 235
           + F   P+   GGN +   S+ RL  ++
Sbjct: 335 MAFNPDPKKPIGGNIMAHSSTTRLGFKK 362


>gi|323309417|gb|EGA62634.1| Rad51p [Saccharomyces cerevisiae FostersO]
          Length = 400

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 23/208 (11%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  LG GG   G I E++G   +GK+ L  HT+A + +         G C 
Sbjct: 159 CLTTGSKNLDTLLG-GGVETGSITELFGEFRTGKSQLC-HTLAVTCQIPLDIGGGEGKCL 216

Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDI 148
           ++D E     +     A++ G+D    L N+  ++    +  L + D    ++      +
Sbjct: 217 YIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSL 276

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IV+DSV AL  R +  G    S   M      +AL++L      +  ++      ++  G
Sbjct: 277 IVVDSVMALY-RTDFSGRGELSARQMHLAKFMRALQRLADQFGVAV-VVTNQVVAQVDGG 334

Query: 209 VMFGS-PETTTGGNALKFYSSVRLDIRR 235
           + F   P+   GGN +   S+ RL  ++
Sbjct: 335 MAFNPDPKKPIGGNIMAHSSTTRLGFKK 362


>gi|312217982|emb|CBX97929.1| similar to meiotic recombination protein dmc1 [Leptosphaeria
           maculans]
          Length = 339

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 99/222 (44%), Gaps = 34/222 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQK----TGGTCAF 100
           +S+GS  LD  LG GGF    I E++G    GKT L+ HT   IAQ  K      G  A+
Sbjct: 100 ISTGSKALDAVLG-GGFQTMSISEVFGEFRCGKTQLS-HTMSVIAQLPKDMGGADGKVAY 157

Query: 101 VDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDMLVR---SGAVDII 149
           +D E        +  A + GVD      N+  ++    E  +E+ + +          ++
Sbjct: 158 IDTEGTFRPERIAQIAERFGVDPDAAQDNITYARAVNSEHQMELLNKVAEFFVGNEYRLL 217

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           +IDS+ AL  R +  G  GE L   Q +L +Q L KLT         ++  NQ++   G 
Sbjct: 218 IIDSIMALF-RVDYTG-RGE-LNERQQKL-NQFLSKLTHVAEEFNVAVLLTNQVQSDPGA 273

Query: 209 -VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241
             +F   +     GG+ L   S+ R+ +R      RV  I+D
Sbjct: 274 SALFAGADGRKPVGGHILAHASATRILLRKGRGEERVAKIQD 315


>gi|222154119|gb|ACM47239.1| RAD51 recombination protein [Triticum aestivum]
          Length = 343

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 97/212 (45%), Gaps = 33/212 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           V++GS  LD  L  GG   G I E+YG   SGKT L  HT+  + +         G   +
Sbjct: 106 VTTGSRELDRILE-GGIETGSITELYGEFRSGKTQLC-HTLCVTCQLPLDQGGGEGKALY 163

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQP-DTGEQA---LEITDMLVRSGAVDI 148
           +DAE           A + G++    L+N+  ++  +T  Q+   LE   M+V +    +
Sbjct: 164 IDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVET-RFAL 222

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMK 206
           +VIDS  AL  R +  G  GE    + AR M  A  LR L          +V  NQ+  +
Sbjct: 223 MVIDSATALY-RTDFSG-RGE----LSARQMHLAKFLRSLQKLADEFGVAVVISNQVVAQ 276

Query: 207 I--GVMFGSPE-TTTGGNALKFYSSVRLDIRR 235
           +  G MF  P+    GGN +   S+ RL +R+
Sbjct: 277 VDGGAMFAGPQIKPIGGNIMAHASTTRLYLRK 308


>gi|302390638|ref|YP_003826459.1| DNA repair protein RadA [Thermosediminibacter oceani DSM 16646]
 gi|302201266|gb|ADL08836.1| DNA repair protein RadA [Thermosediminibacter oceani DSM 16646]
          Length = 449

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 78/174 (44%), Gaps = 18/174 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + +G L LD  LG GG   G +V + G    GK+TL L   A+   TG    +V  E 
Sbjct: 64  ERIKTGLLELDRVLG-GGIVPGSLVLVGGDPGIGKSTLMLQAAAKLGATGKIVLYVTGEE 122

Query: 106 ALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV-AALTPRAE 162
           +   +  R  +LG+   +L I      E  L++ +  VR  +  +++IDS+  A  P   
Sbjct: 123 SAKQVKLRAERLGISGGHLYI----VAENNLDVVEKHVRELSPQVVIIDSIQTAYLPEL- 177

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPET 216
                 ES PG  +++    LR L   +S+     VFI     K G + G P T
Sbjct: 178 ------ESAPGSISQVREATLRLL--KLSKETGTAVFIVGHVTKEGSLAG-PRT 222


>gi|147921438|ref|YP_684747.1| RecA family ATPase [uncultured methanogenic archaeon RC-I]
 gi|110620143|emb|CAJ35421.1| predicted RecA-family ATPase [uncultured methanogenic archaeon
           RC-I]
          Length = 241

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VS+G   LD  +  GG+P+G+ V + G   SGKT +A+H I +  + G  C ++  E
Sbjct: 1   MERVSTGIDELDQFIS-GGYPRGKSVLVTGTPGSGKTIIAIHFIYRGCQDGKKCVYIATE 59

Query: 105 HALDSIY--ARKLGVDLK 120
             L+ I   A  +G D++
Sbjct: 60  EELEDILHQAESIGRDIR 77


>gi|118382143|ref|XP_001024231.1| hypothetical protein TTHERM_00459230 [Tetrahymena thermophila]
 gi|89305998|gb|EAS03986.1| hypothetical protein TTHERM_00459230 [Tetrahymena thermophila
           SB210]
          Length = 356

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 110/265 (41%), Gaps = 72/265 (27%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQ---KTGGTC 98
           I  +S+GS  LD  L  GG     I E YG   SGKT +A HT   +AQSQ   ++ G  
Sbjct: 108 IRRISTGSKALDDILN-GGIESQSITEFYGEYRSGKTQIA-HTACVLAQSQDHCQSPGKV 165

Query: 99  AFVDA--------------------EHALDS-IYARKLGVDLKNLLISQPDTGEQALEIT 137
            ++D                     E+AL + IY R   VD +N L+         ++  
Sbjct: 166 LYIDTEGTFRPERICQIASHYGMEGEYALSNIIYGRAYNVDQQNTLL---------IKGA 216

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEI--EGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
            ++V      ++V+DS+ A   R +    GD+ E           QAL K  S + R   
Sbjct: 217 QLMVEENCFALLVVDSIMA-NFRCDFSGRGDLSER---------QQALGKFMSRLQRMAA 266

Query: 196 ----ILVFINQ-MRMKIGVMFGS--PETTT-GGNALKFYSSVRLDIRRVGSIKDKDSITG 247
                ++  NQ M    G M G   P+    GG+ L   S+ RL +++          T 
Sbjct: 267 EFNIAVIITNQVMADPSGAMTGGAIPQPKPIGGHILAHASTQRLFMKKK---------TD 317

Query: 248 NQTRVKVVKNKMASPFKQ-VEFDIM 271
           N  +VK+V     SP+ Q  E DIM
Sbjct: 318 NIRKVKLVD----SPYLQDKEVDIM 338


>gi|197092361|gb|ACH42253.1| RAD51A recombination protein [Triticum aestivum]
          Length = 316

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 95/221 (42%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS------QKTG-GTCAF 100
           V++GS  LD  L  GG   G I E+YG   SGKT L  HT+  +      Q  G G   +
Sbjct: 106 VTTGSRELDKILE-GGIETGSITELYGEFRSGKTQLC-HTLCVTCQLPLDQGGGEGKALY 163

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +DAE                      L+++ YAR    D ++ L+         LE   M
Sbjct: 164 IDAEGTFRPQRLLQIADRFGLYGADVLENVAYARAYNTDHQSRLL---------LEAASM 214

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           +V +    ++VIDS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 215 MVET-RFALMVIDSATALY-RTDFSGR-GE----LSARQMHLAKFLRSLQKLADEFGVAV 267

Query: 198 VFINQMRMKI--GVMFGSPE-TTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++  G MF  P+    GGN +   S+ RL +R+
Sbjct: 268 VISNQVVAQVDGGAMFAGPQIKPIGGNIMAHASTTRLYLRK 308


>gi|6320942|ref|NP_011021.1| Rad51p [Saccharomyces cerevisiae S288c]
 gi|131783|sp|P25454|RAD51_YEAST RecName: Full=DNA repair protein RAD51
 gi|4275|emb|CAA45563.1| RAD51 [Saccharomyces cerevisiae]
 gi|172339|gb|AAA34948.1| RAD51 protein [Saccharomyces cerevisiae]
 gi|218469|dbj|BAA00913.1| Rad51 protein [Saccharomyces cerevisiae]
 gi|603333|gb|AAB64650.1| Rad51p: RecA-like protein [Saccharomyces cerevisiae]
 gi|190405660|gb|EDV08927.1| DNA repair protein RAD51 [Saccharomyces cerevisiae RM11-1a]
 gi|207345902|gb|EDZ72571.1| YER095Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|259146020|emb|CAY79280.1| Rad51p [Saccharomyces cerevisiae EC1118]
 gi|285811729|tpg|DAA07757.1| TPA: Rad51p [Saccharomyces cerevisiae S288c]
 gi|323333774|gb|EGA75165.1| Rad51p [Saccharomyces cerevisiae AWRI796]
 gi|323355292|gb|EGA87117.1| Rad51p [Saccharomyces cerevisiae VL3]
          Length = 400

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 23/208 (11%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  LG GG   G I E++G   +GK+ L  HT+A + +         G C 
Sbjct: 159 CLTTGSKNLDTLLG-GGVETGSITELFGEFRTGKSQLC-HTLAVTCQIPLDIGGGEGKCL 216

Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDI 148
           ++D E     +     A++ G+D    L N+  ++    +  L + D    ++      +
Sbjct: 217 YIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSL 276

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IV+DSV AL  R +  G    S   M      +AL++L      +  ++      ++  G
Sbjct: 277 IVVDSVMALY-RTDFSGRGELSARQMHLAKFMRALQRLADQFGVAV-VVTNQVVAQVDGG 334

Query: 209 VMFGS-PETTTGGNALKFYSSVRLDIRR 235
           + F   P+   GGN +   S+ RL  ++
Sbjct: 335 MAFNPDPKKPIGGNIMAHSSTTRLGFKK 362


>gi|194691108|gb|ACF79638.1| unknown [Zea mays]
 gi|195620070|gb|ACG31865.1| DNA repair protein RAD51 [Zea mays]
          Length = 340

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 93/221 (42%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           V++GS  LD  L  GG   G I EIYG   SGKT L  HT+  + +         G   +
Sbjct: 103 VTTGSRELDKILE-GGIETGSITEIYGEFRSGKTQLC-HTLCVTCQLPLDQGGGEGKALY 160

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +DAE                      L+++ YAR    D ++ L+         LE   M
Sbjct: 161 IDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL---------LEAASM 211

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           ++ +    ++V+DS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 212 MIET-RFALMVVDSATALY-RTDFSG-RGE----LSARQMHMAKFLRSLQKLADEFGVAV 264

Query: 198 VFINQMRMKI--GVMFGSPE-TTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++    MF  P+    GGN +   S+ RL +R+
Sbjct: 265 VITNQVVAQVDGSAMFAGPQFKPIGGNIMAHASTTRLALRK 305


>gi|242050664|ref|XP_002463076.1| hypothetical protein SORBIDRAFT_02g037320 [Sorghum bicolor]
 gi|241926453|gb|EER99597.1| hypothetical protein SORBIDRAFT_02g037320 [Sorghum bicolor]
          Length = 344

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 93/221 (42%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           V++GS  LD  L  GG   G I EIYG   SGKT L  HT+  + +         G   +
Sbjct: 107 VTTGSRELDKILE-GGIETGSITEIYGEFRSGKTQLC-HTLCVTCQLPLDQGGGEGKALY 164

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +DAE                      L+++ YAR    D ++ L+         LE   M
Sbjct: 165 IDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL---------LEAASM 215

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           ++ +    ++V+DS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 216 MIET-RFALMVVDSATALY-RTDFSG-RGE----LSARQMHMAKFLRSLQKLADEFGVAV 268

Query: 198 VFINQMRMKI--GVMFGSPE-TTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++    MF  P+    GGN +   S+ RL +R+
Sbjct: 269 VITNQVVAQVDGSAMFAGPQFKPIGGNIMAHASTTRLALRK 309


>gi|269121065|ref|YP_003309242.1| DNA repair protein RadA [Sebaldella termitidis ATCC 33386]
 gi|268614943|gb|ACZ09311.1| DNA repair protein RadA [Sebaldella termitidis ATCC 33386]
          Length = 450

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 14/140 (10%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113
            D  LG GG  KG +V I G    GK+T  L  I +  KTG    ++  E +L  I  R 
Sbjct: 73  FDRVLG-GGLVKGEVVLISGNPGIGKSTFLLQLIDEYSKTGNVF-YISGEESLRQIKQRA 130

Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            +LGV  K+L ++     E  LE  + ++      I+VIDS+  L        +   S+P
Sbjct: 131 DRLGVKSKSLYLAN----ETNLEKIESIILKDNPKIVVIDSIQTLY------SENVNSIP 180

Query: 173 GMQARLMSQALRKLTSSISR 192
           G   ++    L+ +  + SR
Sbjct: 181 GSMTQIRETTLKIIEMAKSR 200


>gi|255552035|ref|XP_002517062.1| meiotic recombination protein dmc1, putative [Ricinus communis]
 gi|223543697|gb|EEF45225.1| meiotic recombination protein dmc1, putative [Ricinus communis]
          Length = 353

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 94/208 (45%), Gaps = 26/208 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  LD  LG GG     I E +G   SGKT LA HT+  S +         G  A+
Sbjct: 108 ITTGSQALDELLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSTQLPTNMRGGNGKVAY 165

Query: 101 VDAEHAL--DSIY--ARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149
           +D E     D I   A + G+D    L N++ ++  T E    +   L    + +   ++
Sbjct: 166 IDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLL 225

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DSV AL  R +  G  GE L   Q +L +Q L +LT         +   NQ+    G 
Sbjct: 226 IVDSVIALF-RVDFTGR-GE-LAERQQKL-AQMLSRLTKIAEEFNVAVYMTNQVIADPGG 281

Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIRR 235
            V    P+   GG+ L   +++RL  R+
Sbjct: 282 GVFISDPKKPAGGHVLAHAATIRLMFRK 309


>gi|315231638|ref|YP_004072074.1| DNA repair and recombination RadA-like protein [Thermococcus
           barophilus MP]
 gi|315184666|gb|ADT84851.1| DNA repair and recombination RadA-like protein [Thermococcus
           barophilus MP]
          Length = 355

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 96/211 (45%), Gaps = 29/211 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-------QSQKTGGTCAF 100
           +S+GS  LD  LG GG     I E++G   SGKT +A HT+A       +     G+  +
Sbjct: 119 ISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQIA-HTLAVMVQLPPEEGGLNGSVIW 176

Query: 101 VDAEHALDSIYARKL----GVD----LKNLLISQP-DTGEQALE-------ITDMLVRSG 144
           +D E+       R++    G+D    LKN+ +++  +T  Q L        I + L    
Sbjct: 177 IDTENTFRPERIRQIAENRGLDPDEVLKNIYVARAYNTNHQMLLVEKAEEIIKEKLNTDR 236

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            V ++V+DS+ +   R+E    +G      + + + + L  L    +     +   NQ++
Sbjct: 237 PVKLMVVDSLTSHF-RSEY---VGRGALAERQQKLGKHLADLHRLANLYDIAIFVTNQVQ 292

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
            +    FG P    GG+ L   +++R+ +R+
Sbjct: 293 ARPDAFFGDPTRPIGGHILAHSATLRIYLRK 323


>gi|91080339|ref|XP_974640.1| PREDICTED: similar to RAD51 homolog protein [Tribolium castaneum]
 gi|270006418|gb|EFA02866.1| spindle A-like protein [Tribolium castaneum]
          Length = 338

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 99/213 (46%), Gaps = 35/213 (16%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  LG GG   G I EI+G   +GKT +  HT+A + +         G C +
Sbjct: 101 LTTGSKELDKLLG-GGIETGSITEIFGEFRTGKTQIC-HTLAVTCQLALESGGGEGKCLY 158

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQP-DTGEQALEITDMLVRSGAV----- 146
           +D E           A +  +D    L N++ ++  +T  Q    T++LV + A+     
Sbjct: 159 IDTEGTFRPERLLPVAERYNMDGQQVLDNVVFARAFNTDHQ----TELLVHAAAMMMESR 214

Query: 147 -DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
             ++++DS  +L  R +  G  GE L   Q  L ++ LR L          +V  NQ+  
Sbjct: 215 YCLLIVDSATSLY-RTDYSG-RGE-LSARQNHL-ARFLRMLLRLADEFGVAVVLTNQVVA 270

Query: 206 KI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           ++    MF + P+   GGN +   S+ RL +R+
Sbjct: 271 QVDGAAMFNADPKKPIGGNIMAHSSTTRLSLRK 303


>gi|242069171|ref|XP_002449862.1| hypothetical protein SORBIDRAFT_05g024565 [Sorghum bicolor]
 gi|241935705|gb|EES08850.1| hypothetical protein SORBIDRAFT_05g024565 [Sorghum bicolor]
          Length = 340

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 94/221 (42%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS------QKTG-GTCAF 100
           V++GS  LD  L  GG   G I EIYG   SGKT L  HT+  +      Q  G G   +
Sbjct: 100 VTTGSRELDKILE-GGIETGSITEIYGEFRSGKTQLC-HTLCVTCQLPLDQGGGEGKAMY 157

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +DAE                      L+++ YAR    D ++ L+         LE   M
Sbjct: 158 IDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL---------LEAASM 208

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           ++ +    ++V+DS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 209 MIET-RFALMVVDSATALY-RTDFSG-RGE----LSARQMHMAKFLRSLQKLADEFGVAV 261

Query: 198 VFINQMRMKI--GVMFGSPE-TTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++    MF  P+    GGN +   S+ RL +R+
Sbjct: 262 VITNQVVAQVDGSAMFAGPQIKPIGGNIMAHASTTRLALRK 302


>gi|159041684|ref|YP_001540936.1| DNA repair and recombination protein RadA [Caldivirga
           maquilingensis IC-167]
 gi|157920519|gb|ABW01946.1| DNA repair and recombination protein RadA [Caldivirga
           maquilingensis IC-167]
          Length = 358

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 93/208 (44%), Gaps = 22/208 (10%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA--LHTIAQ--SQKTG--GTC 98
           ++ +S+G   LD  LG GG     I E+ G   SGKT     L  + Q    K G  G  
Sbjct: 120 VQYISTGVKALDELLG-GGIETRAITELAGEFGSGKTNFCHQLSVMVQLPEDKGGLKGKA 178

Query: 99  AFVDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVD 147
            F+D E+          A+  G+D    LKN+  ++    +  + I D    ++    + 
Sbjct: 179 LFIDTENTFRPERIVQIAKYRGLDPKEALKNIFYARAYNSDHQMLIIDEAKKIIPKENIR 238

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDS+ A   R+E  G   E+L   Q +L +  + +L          +V  NQ+  + 
Sbjct: 239 LIVIDSLVAHF-RSEYPGR--ENLAERQQKL-NHHIAQLLKLADIYNAAVVVTNQVIAQP 294

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
            + FG+P    GGN +   ++ R+ +R+
Sbjct: 295 DMFFGNPLKPAGGNVIAHGATYRIWLRK 322


>gi|255722349|ref|XP_002546109.1| DNA repair protein RAD51 [Candida tropicalis MYA-3404]
 gi|240136598|gb|EER36151.1| DNA repair protein RAD51 [Candida tropicalis MYA-3404]
          Length = 364

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 110/245 (44%), Gaps = 36/245 (14%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  LG GG   G I E++G   +GK+ L  HT+A + +         G C 
Sbjct: 121 CLTTGSKQLDTLLG-GGIETGSITEVFGEFRTGKSQLC-HTLAVTCQLPIDMGGGEGKCL 178

Query: 100 FVDAE-----HALDSIYARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVD 147
           ++D E     + L SI A + G++    L N+  ++    E  L + ++   ++      
Sbjct: 179 YIDTEGTFRPNRLISI-AERYGLNANDCLDNVAYARAYNAEHQLNLLNIAAQMMAESRFS 237

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++++DS+ +L  R +  G  GE L   Q  + ++ +R L          +V  NQ+  ++
Sbjct: 238 LLIVDSIMSLY-RTDYAG-RGE-LSARQTHV-ARFMRTLQRLADEFGIAVVITNQVVAQV 293

Query: 208 GVMFG----SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKN 257
             M G     P+   GGN +   S+ RL ++      R+  I D   +  ++    + ++
Sbjct: 294 DGMAGMFNPDPKKPIGGNIIAHASTTRLSLKKGRAETRICKIYDSPCLPESECVFAIYED 353

Query: 258 KMASP 262
            +  P
Sbjct: 354 GIGDP 358


>gi|300708611|ref|XP_002996481.1| hypothetical protein NCER_100414 [Nosema ceranae BRL01]
 gi|239605787|gb|EEQ82810.1| hypothetical protein NCER_100414 [Nosema ceranae BRL01]
          Length = 332

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 97/212 (45%), Gaps = 32/212 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           +++GS  LD  L  GGF  G I E++G   +GKT L  HT+A + +         G   +
Sbjct: 94  LTTGSSELDKLLN-GGFESGSITEVFGEFRTGKTQLC-HTVAVTCQLPPEQGGASGKAMY 151

Query: 101 VDAEHALDS--IY--ARKLGVDLKNLL--IS-----QPDTGEQALEITDMLVRSGAVDII 149
           +D E    S  I+  A + G++ +++L  IS       D   Q L     L+ +    ++
Sbjct: 152 IDTEGTFRSERIFPIAERYGLNPEDVLENISYARAYNSDHQSQLLVQASALMSTSKYSVL 211

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMK- 206
           +IDS  AL  R +  G  GE    + AR +S A  LR L +     +  ++  NQ+    
Sbjct: 212 IIDSATALY-RTDFSG-RGE----LGARQISLARYLRDLVNLAETYQVAVIITNQVVSNP 265

Query: 207 ---IGVMFGSPETTTGGNALKFYSSVRLDIRR 235
              + +  G  +   GGN +   S+ RL +R+
Sbjct: 266 DGAMSMFAGDVKKPIGGNIMAHASTTRLSLRK 297


>gi|302501019|ref|XP_003012502.1| conserved hypothetical protein [Arthroderma benhamiae CBS 112371]
 gi|291176061|gb|EFE31862.1| conserved hypothetical protein [Arthroderma benhamiae CBS 112371]
          Length = 454

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 76/173 (43%), Gaps = 32/173 (18%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARKLGVD--- 118
           G  +G I E+ GP  SGKT+LA+ T   + K G T  ++D    +  S + R L  D   
Sbjct: 107 GIRRGEITELSGPRGSGKTSLAMTTAVNALKQGETVIWIDTAGPICMSRFERMLSRDSTP 166

Query: 119 ------LKNLLISQPDTGEQALEITDMLV---RSGAVDIIVIDSVAAL---TPRAEIEGD 166
                 L+NLL  QP T    L +    +         +IV+DS++ L     R+++   
Sbjct: 167 LETQDRLRNLLHFQPTTLAHLLALICHPIADFPPPNTGLIVVDSISCLFGSEFRSKLPAK 226

Query: 167 MG---ESLPGMQARLMSQA-----LRKLTSSI--------SRSKCILVFINQM 203
           +G   + L G  +R   +A       KL  S+        SR  C +V +N+M
Sbjct: 227 LGSKAKDLHGTGSRANKEAQESKLWWKLIGSLSSNLNALASRFDCAVVVVNEM 279


>gi|91080301|ref|XP_974146.1| PREDICTED: similar to RAD51 homolog protein [Tribolium castaneum]
 gi|270006417|gb|EFA02865.1| spindle A-like protein [Tribolium castaneum]
          Length = 338

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 99/213 (46%), Gaps = 35/213 (16%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-------QSQKTGGTCAF 100
           +++GS  LD  LG GG   G I EI+G   +GKT +  HT+A       +S    G C +
Sbjct: 101 LTTGSKELDKLLG-GGIETGSITEIFGEFRTGKTQIC-HTLAVTCQLSVESGGGEGKCLY 158

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQP-DTGEQALEITDMLVRSGAV----- 146
           +D E           A +  +D    L N++ ++  +T  Q    T++LV + A+     
Sbjct: 159 IDTEGTFRPERLLPVAERYNMDGQQVLDNVVFARAFNTDHQ----TELLVHAAAMMMESR 214

Query: 147 -DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
             ++++DS  +L  R +  G  GE L   Q  L ++ LR L          +V  NQ+  
Sbjct: 215 YCLLIVDSATSLY-RTDYSG-RGE-LSARQNHL-ARFLRMLLRLADEFGVAVVLTNQVVA 270

Query: 206 KI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           ++    MF + P+   GGN +   S+ RL +R+
Sbjct: 271 QVDGAAMFNADPKKPIGGNIMAHSSTTRLSLRK 303


>gi|15790613|ref|NP_280437.1| DNA repair and recombination protein RadB [Halobacterium sp. NRC-1]
 gi|169236351|ref|YP_001689551.1| DNA repair and recombination protein RadB [Halobacterium salinarum
           R1]
 gi|13878696|sp|Q9HPF2|RADB_HALSA RecName: Full=DNA repair and recombination protein radB
 gi|226736611|sp|B0R636|RADB_HALS3 RecName: Full=DNA repair and recombination protein radB
 gi|10581135|gb|AAG19917.1| DNA repair protein [Halobacterium sp. NRC-1]
 gi|167727417|emb|CAP14205.1| DNA repair protein [Halobacterium salinarum R1]
          Length = 236

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 93/234 (39%), Gaps = 23/234 (9%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--- 104
           + +G   LD  LG GG  +G + ++YGP ++GKT +AL T   +   GG   +VD E   
Sbjct: 8   LPTGCGALDELLG-GGVERGTVTQLYGPPAAGKTNVALTTAVTTAAAGGLAVYVDTEGLS 66

Query: 105 ----HALDSIYARKLGVDLKNLLISQP-DTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
                 L    A        N+++S   D  EQA  + D    +   D+IV+DSV     
Sbjct: 67  LARFQQLLEARATDPEAASANVIVSDAHDFDEQAQAVRDTADFADRADLIVVDSVTGFYR 126

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
            A      G+   G   R ++  +  L S   +    +V  NQ+   +           G
Sbjct: 127 LAR----GGDDTTGDALRQVADQITHLLSLARKHDLAVVVTNQVFTDVD-NDSDRARPLG 181

Query: 220 GNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           G+ L  ++         G++   D   G   R  + K++     +  +F I  G
Sbjct: 182 GHTLAHWT---------GTVLRLDRFRGGTRRATLEKHRAKPDGEHAQFQITDG 226


>gi|109896367|ref|YP_659622.1| hypothetical protein Patl_0036 [Pseudoalteromonas atlantica T6c]
 gi|109698648|gb|ABG38568.1| conserved hypothetical protein [Pseudoalteromonas atlantica T6c]
          Length = 229

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 2/107 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT-IAQSQKTGGTCAFVDAE 104
           +V+ SG   LD  L  GG P+  +V+I  P   G+  L L + + + Q +     F+ A 
Sbjct: 25  KVLPSGFDALDAHLE-GGLPEQGVVDISSPTGIGELRLLLPSFVLRQQNSDKLLVFIGAP 83

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
             L++    K+G +L  +LI +P   + AL  T+  ++SG  D +++
Sbjct: 84  ARLNAPMLAKMGFELSRILIIEPKNAKDALWSTEQCLKSGCCDGVLL 130


>gi|300122053|emb|CBK22627.2| unnamed protein product [Blastocystis hominis]
          Length = 225

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 25/167 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT-----CAFVD 102
           +S+GS  +D  L +GGF  G + EI G  S+GKT L +   A  Q+         C  +D
Sbjct: 46  ISTGSSEID-NLLLGGFKCGTVTEISGRGSTGKTQLVITACATVQRYNTPSHQFQCIVID 104

Query: 103 AEHALDSIYARKLGVDLK-------NLLISQPDTGEQALEITD----MLVRSGAVDIIVI 151
           AE+   +I  +++  +LK       N+ + +P +    +E+       L +   V  I I
Sbjct: 105 AENTYSAIRQQEVLTNLKNPNASLRNIFVWKPQSLTDLIELLKSLPIFLEQHPQVRFIAI 164

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           DS+A    +     DM E     ++  +++A+  LT   +R +C ++
Sbjct: 165 DSIAYYFRQF---TDMIE-----RSSKLNEAISYLTKIANRMQCAIL 203


>gi|219119366|ref|XP_002180445.1| Rad51 DNA recombination/repair protein [Phaeodactylum tricornutum
           CCAP 1055/1]
 gi|217407918|gb|EEC47853.1| Rad51 DNA recombination/repair protein [Phaeodactylum tricornutum
           CCAP 1055/1]
          Length = 350

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 30/211 (14%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS+ LD  L  GG   G I E++G   +GKT L  HT+  + +         G   
Sbjct: 113 TLTTGSIELDKLLE-GGVETGSITEVFGEFRTGKTQLC-HTLCVTCQMAVTEGGAEGKAI 170

Query: 100 FVDAE-----HALDSIYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD--- 147
           ++D E     + L +I A + G+D    L+N+  ++    E   E+  +     + D   
Sbjct: 171 YIDTEGTFRPNRLQAI-AERFGLDPTVALENVAYARAHNSEHQAELLKLAAAIMSQDRYA 229

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206
           ++V+DS  AL  R +  G    S   MQ   M+Q LR+LT  ++    + VFI NQ+   
Sbjct: 230 LLVVDSATALF-RTDYTGRGELSERQMQ---MAQFLRQLT-RLAEEFGVAVFITNQVVAN 284

Query: 207 I-GVMFGSPETTT-GGNALKFYSSVRLDIRR 235
             G+ F    T   GGN +   S+ RL +R+
Sbjct: 285 PDGMSFAKDSTKPIGGNIMAHASTTRLRLRK 315


>gi|331014832|gb|EGH94888.1| recombinase A [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 38

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 26/32 (81%)

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           +K+ D + G++TRVKVVKNK+A PF+Q EF I
Sbjct: 7   LKEGDEVVGSETRVKVVKNKVAPPFRQAEFQI 38


>gi|294944311|ref|XP_002784192.1| meiotic recombination protein DMC1, putative [Perkinsus marinus
           ATCC 50983]
 gi|239897226|gb|EER15988.1| meiotic recombination protein DMC1, putative [Perkinsus marinus
           ATCC 50983]
          Length = 335

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 94/211 (44%), Gaps = 31/211 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA--LHTIAQSQKT----GGTCAFV 101
           +S+GS  +D  LG GG     I E YG    GKT L   L  IAQ  ++     G   ++
Sbjct: 98  LSTGSSKVDQLLG-GGIESCSITEFYGEFRCGKTQLCHSLSVIAQMPQSYGGANGKVCYI 156

Query: 102 DAEHAL--DSI--YARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---IIV 150
           D E+    D I   A+  GVD    L N++ ++    E  +++   +    A +   ++V
Sbjct: 157 DTENTFRPDRITQIAQAFGVDPQQVLDNIIYARCYNSEHLVQLLLCVAAKMAEEKYALLV 216

Query: 151 IDSVAALTP-RAEI--EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +DS+  + P R +    GD+ E     + +L+S+ + +L          +V  NQ+    
Sbjct: 217 VDSI--MGPFRVDFTGRGDLAE-----RQQLLSRVMSRLQKLSEEYNLAVVITNQVMADP 269

Query: 208 GVMF---GSPETTTGGNALKFYSSVRLDIRR 235
                   +P    GG+ L  YS+ R+ +R+
Sbjct: 270 AAAMSFAANPPKPIGGHVLAHYSTTRIALRK 300


>gi|134079842|emb|CAK40975.1| unnamed protein product [Aspergillus niger]
          Length = 334

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 99/222 (44%), Gaps = 34/222 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQK----TGGTCAF 100
           +S+GS   D  LG GGF    I E++G    GKT L+ HT   +AQ  K     GG  A+
Sbjct: 95  ISTGSKQFDSILG-GGFQSMSISEVFGEFRCGKTQLS-HTMSVVAQLPKELGGAGGKVAY 152

Query: 101 VDAEHALD----SIYARKLGVDL----KNLLISQPDTGEQALEITDMLVRS---GAVDII 149
           +D E        +  A + GVD     +N+  ++    E  LE+ + L +    G   ++
Sbjct: 153 IDTEGTFRPERIAQIAERFGVDADAAQENIAYARALNSEHQLELLNTLSKEFAGGEYRLL 212

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           +IDS+     R +  G  GE L   Q +L +Q L KL          ++  NQ++   G 
Sbjct: 213 IIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFNICVLMTNQVQSDPGA 268

Query: 209 -VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241
             +F   +     GG+ L   S+ R+ +R      RV  I+D
Sbjct: 269 SALFAGADGRKPVGGHVLAHASATRVLLRKGRGEERVAKIQD 310


>gi|66391488|ref|YP_239013.1| UvsX RecA-like recombination protein [Enterobacteria phage RB43]
 gi|62288576|gb|AAX78559.1| UvsX RecA-like recombination protein [Enterobacteria phage RB43]
          Length = 386

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 112/275 (40%), Gaps = 32/275 (11%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           S+  +F  I    +    L++AL     GG   G +    GP    K+ L L T++   K
Sbjct: 23  SESDVFNNITKTRTRVPILNLALSGAFDGGLTSG-LTLFAGPSKHFKSNLGLVTVSAYLK 81

Query: 94  TG--GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ----ALEITDMLVRSGAVD 147
                 C F D+E  +   Y + +GVD   ++ ++  T EQ     +   D L R   V 
Sbjct: 82  ANEDAVCLFYDSEKGVTKSYLKSMGVDPDRVVYTRITTVEQLRNDVVSQLDALERGDKV- 140

Query: 148 IIVIDSVAALTPRAEI--------EGDM--GESLPGMQARLMSQALRKLTSSISRSKCIL 197
           II +DSV     + E+        + DM   ++L GM  R+++  L  L   +    CI 
Sbjct: 141 IIFVDSVGNTASKKELADALSDNDKQDMTRAKALKGM-FRMVTPYLADLDIPMV---CIC 196

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
              +   M       S +  +GG  L  YS+    I     +K+   + G    + + K+
Sbjct: 197 HTYDTQEMY------SKKVISGGTGL-MYSADTAIILGKQQVKEGTEVVGYDFIMNIEKS 249

Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           +      +    + Y  GIS +  L+DL ++ + V
Sbjct: 250 RFVKEKSKFPLHVTYEGGISMYSGLLDLAMEMNFV 284


>gi|315230696|ref|YP_004071132.1| DNA repair and recombination RadB-like protein [Thermococcus
           barophilus MP]
 gi|315183724|gb|ADT83909.1| DNA repair and recombination RadB-like protein [Thermococcus
           barophilus MP]
          Length = 221

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 17/132 (12%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +++GS  LD  LG GG  +G + +IYG  ++GKTTLA+  I    K  G   ++D E
Sbjct: 1   MEKLTTGSKSLDELLG-GGIERGVLTQIYGAFATGKTTLAMQ-IGMLNK--GKVIYIDTE 56

Query: 105 HALD----SIYARKLGVD----LKNLLISQP-DTGEQALEITDM-LVRSGAVDIIVIDSV 154
                    + A K G+D    L+  +I +P D  EQ   I+ +  + +    +IV+DSV
Sbjct: 57  GGFSPERLKLMAEKRGIDPEETLQKFIIFEPHDFREQKRVISKLKTIVNNRFALIVVDSV 116

Query: 155 AALTPRAEIEGD 166
              T    IE D
Sbjct: 117 ---TSHYRIEKD 125


>gi|226292806|gb|EEH48226.1| meiotic recombination protein DMC1 [Paracoccidioides brasiliensis
           Pb18]
          Length = 632

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 116/273 (42%), Gaps = 37/273 (13%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IA 89
           M+LG Q    + +  +S+GS   D  L  GGF    I E+YG    GKT L+ HT   +A
Sbjct: 54  MELGHQR---KRVVKISTGSKQFDSILA-GGFQSMSISEVYGEFRCGKTQLS-HTMSVVA 108

Query: 90  QSQK----TGGTCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEIT 137
           Q  K      G  A++D E        +  A + GVD    L+N+  ++    E  LE+ 
Sbjct: 109 QLPKDMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELL 168

Query: 138 DMLVRSGA---VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           + L +  A     +++IDS+     R +  G  GE L   Q +L +Q L KL        
Sbjct: 169 NTLSKEFAGSEYRLLIIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFN 224

Query: 195 CILVFINQMRMKIG--VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKDKDS 244
             ++  NQ++   G   +F   +     GG+ L   S+ R+ +R      RV  I+D   
Sbjct: 225 VCVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTRVLLRKGRGEERVAKIQDSPD 284

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277
               +    +    +  P K  +F +   + IS
Sbjct: 285 CPEREATYVITNGGINDPDKNHKFKLDRSQTIS 317


>gi|18874071|dbj|BAB85491.1| Rad51 [Oryza sativa Japonica Group]
 gi|218186098|gb|EEC68525.1| hypothetical protein OsI_36814 [Oryza sativa Indica Group]
          Length = 339

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 93/221 (42%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           V++GS  LD  L  GG   G I EIYG   SGKT L  HT+  + +         G   +
Sbjct: 102 VTTGSRELDKILD-GGIETGSITEIYGEFRSGKTQLC-HTLCVTCQLPLDQGGGEGKALY 159

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +DAE                      L+++ YAR    D ++ L+         LE   M
Sbjct: 160 IDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL---------LEAASM 210

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           ++ +    ++++DS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 211 MIET-RFALMIVDSATALY-RTDFSG-RGE----LSARQMHMAKFLRSLQKLADEFGVAV 263

Query: 198 VFINQMRMKI--GVMFGSPE-TTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++    MF  P+    GGN +   S+ RL +R+
Sbjct: 264 VITNQVVAQVDGSAMFAGPQIKPIGGNIMAHASTTRLALRK 304


>gi|50556100|ref|XP_505458.1| YALI0F15477p [Yarrowia lipolytica]
 gi|49651328|emb|CAG78267.1| YALI0F15477p [Yarrowia lipolytica]
          Length = 329

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 99/213 (46%), Gaps = 28/213 (13%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------G 96
           G+  +++GS  LD  LG GG   G I E++G   +GK+ L  HT+A + +         G
Sbjct: 87  GLITLTTGSSQLDTLLG-GGIETGAITEMFGEFRTGKSQLC-HTLAVTCQLPIDQGGGEG 144

Query: 97  TCAFVDAE-----HALDSIYARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSG 144
            C ++D E       L  I AR+ G++    L N+  ++    +  +++  M   ++   
Sbjct: 145 KCLYIDTEGTFRPERLHQI-ARRYGLNGDEVLDNVAYARAHNSDHQMQLLQMAANMMTKS 203

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
               +++DS+ AL  R +  G  GE L   Q  + ++ +R L          +V  NQ+ 
Sbjct: 204 RFSCLIVDSIMALY-RTDYAG-RGE-LSARQTHV-AKFMRTLQRLADEFGIAVVITNQVV 259

Query: 205 MKI-GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
            ++ G +F   P+   GGN +   S+ RL  ++
Sbjct: 260 AQVDGAVFNPDPKKPIGGNIVAHASTTRLYFKK 292


>gi|319404038|emb|CBI77626.1| DNA repair protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 471

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 10/157 (6%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG I+ L S     E +  + SG   LD   G GGF +G  + I G    GK+TL   T 
Sbjct: 52  KGHIVTLTSLSGDIENVPRIHSGIAELDRVTG-GGFVRGSALLIAGDPGIGKSTLLTQTA 110

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A   + G    +V  E A+  I  R   ++  N  + Q        +I   L     +D+
Sbjct: 111 AALSQKGYNVIYVSGEEAITQIRLRAQRLNATNTAV-QLAAETNVEDILATLNTHKKLDM 169

Query: 149 IVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQAL 183
           +++DS+  L        ++ +S PG   Q R+ +QA+
Sbjct: 170 VIVDSIQTLW------SNLADSAPGTVTQVRISAQAM 200


>gi|317033565|ref|XP_001395134.2| meiotic recombination protein DMC1 [Aspergillus niger CBS 513.88]
          Length = 337

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 99/222 (44%), Gaps = 34/222 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQK----TGGTCAF 100
           +S+GS   D  LG GGF    I E++G    GKT L+ HT   +AQ  K     GG  A+
Sbjct: 98  ISTGSKQFDSILG-GGFQSMSISEVFGEFRCGKTQLS-HTMSVVAQLPKELGGAGGKVAY 155

Query: 101 VDAEHALD----SIYARKLGVDL----KNLLISQPDTGEQALEITDMLVRS---GAVDII 149
           +D E        +  A + GVD     +N+  ++    E  LE+ + L +    G   ++
Sbjct: 156 IDTEGTFRPERIAQIAERFGVDADAAQENIAYARALNSEHQLELLNTLSKEFAGGEYRLL 215

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           +IDS+     R +  G  GE L   Q +L +Q L KL          ++  NQ++   G 
Sbjct: 216 IIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFNICVLMTNQVQSDPGA 271

Query: 209 -VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241
             +F   +     GG+ L   S+ R+ +R      RV  I+D
Sbjct: 272 SALFAGADGRKPVGGHVLAHASATRVLLRKGRGEERVAKIQD 313


>gi|8567794|gb|AAF76366.1| hypothetical protein [Arabidopsis thaliana]
          Length = 135

 Score = 45.4 bits (106), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 32/52 (61%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           T LA +   +     G CA++DAE+A+D   A  +GV+ + LLIS+PD+ E 
Sbjct: 66  TPLAFYLSKKDLLVPGYCAYLDAENAMDPSLAESIGVNTEELLISRPDSAEN 117


>gi|8307944|gb|AAF74403.1|AF198107_3 DNA repair protein RAD51 [Giardia intestinalis]
          Length = 236

 Score = 45.4 bits (106), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 102/232 (43%), Gaps = 51/232 (21%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAFVD 102
           SG    +  LG GG     I E++G   +GKT L  HT+A + +        GG   ++D
Sbjct: 1   SGCADFNALLG-GGVETMSITEVFGEFRTGKTQLC-HTLAVTAQLPVSKGGGGGKTVYID 58

Query: 103 AEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDMLVR---SGAVDIIVI 151
            E        +  A + G++    L N+++++  T EQ +E    L +        ++++
Sbjct: 59  TEGTFRPEKVAPIAERFGLNPKKALDNIMVARVYTHEQQIECITALPKLMVENQFSLVIV 118

Query: 152 DSVAAL-----TPRAEI---EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQ 202
           DS+ AL     T R E+   +  +G+ L G         L KL    +    + VF+ NQ
Sbjct: 119 DSLTALFRVDFTGRGELADRQQKLGQHLSG---------LAKLADEFN----LAVFVTNQ 165

Query: 203 MRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
           +  ++    MF + P+   GG+ L   S+ RL +R      RV  I D  S+
Sbjct: 166 VMAQVDGAAMFTADPKKPIGGHILAHASTTRLYLRKGRGDTRVAKIYDSPSL 217


>gi|240103053|ref|YP_002959362.1| RecA family AAA ATPase [Thermococcus gammatolerans EJ3]
 gi|239910607|gb|ACS33498.1| RecA family AAA ATPase [Thermococcus gammatolerans EJ3]
          Length = 235

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
           G I + ++ V SG  GLD  +G GGF  GR+  I GP  SGKTT+ +  + +  + G   
Sbjct: 2   GEILKSLDRVPSGVPGLDDIIG-GGFLPGRVYLITGPPGSGKTTMGVQFLVEGARNGEKG 60

Query: 99  AFV 101
            FV
Sbjct: 61  VFV 63


>gi|242082562|ref|XP_002441706.1| hypothetical protein SORBIDRAFT_08g001020 [Sorghum bicolor]
 gi|241942399|gb|EES15544.1| hypothetical protein SORBIDRAFT_08g001020 [Sorghum bicolor]
          Length = 344

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 26/208 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  LD  LG GG     I E +G   SGKT LA HT+  S +         G  A+
Sbjct: 108 ITTGSQALDELLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSTQLPIHMHGGNGKVAY 165

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149
           +D E           A + G+D    L N++ ++  T E    +   L    A +   ++
Sbjct: 166 IDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLL 225

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DSV AL  R +  G  GE L   Q +L +Q L +LT         +   NQ+    G 
Sbjct: 226 IVDSVIALF-RVDFSG-RGE-LAERQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281

Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIRR 235
            +    P+   GG+ L   +++RL +R+
Sbjct: 282 GMFITDPKKPAGGHVLAHAATIRLMLRK 309


>gi|326782178|ref|YP_004322579.1| UvsX RecA-like protein [Prochlorococcus phage P-HM1]
 gi|310004385|gb|ADO98778.1| UvsX RecA-like protein [Prochlorococcus phage P-HM1]
          Length = 352

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 53/251 (21%), Positives = 106/251 (42%), Gaps = 23/251 (9%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG--GTCAFVDAEHALDSIYARKLGVDLK 120
           G P  +I  + G   +GKT   L  +    +        + ++E A+      + G+D  
Sbjct: 65  GIPSNKITALAGESGTGKTFFCLGVVQNYLRDNPDAGVVYFESEAAVTKDMIDERGIDGS 124

Query: 121 NLLISQPDTGEQ----ALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEGDMGESLP 172
            +++    T ++    A++I D  +     D    + V+DS+  L+   E    + +S  
Sbjct: 125 RMILVPVTTVQEFRTNAIQILDKYLEQKTEDRKPMMFVLDSLGMLSTSKE----LADSAE 180

Query: 173 GMQARLMSQA------LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           G   R M++A       R LT  + ++   L+  N     +G    + E   GG+ LK+ 
Sbjct: 181 GKDTRDMTRAQVVKAIFRILTLKLGKANVPLLVTNHTYDVVGAYIPTKE-MGGGSGLKYA 239

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY-GEGISFFGELIDL 285
           +S  + + +    KD   + GN  + K  K+++      V+  + +   G+  +  L++L
Sbjct: 240 ASTIIYLSKKKE-KDGKEVIGNIIKAKAAKSRLTKENASVDTRLYFDARGLDKYYGLLEL 298

Query: 286 GVKASIVDKSG 296
           G K  I ++ G
Sbjct: 299 GEKYGIFERKG 309


>gi|115486271|ref|NP_001068279.1| Os11g0615800 [Oryza sativa Japonica Group]
 gi|18874069|dbj|BAB85490.1| Rad51 [Oryza sativa Japonica Group]
 gi|77551901|gb|ABA94698.1| DNA repair protein RAD51, putative, expressed [Oryza sativa
           Japonica Group]
 gi|113645501|dbj|BAF28642.1| Os11g0615800 [Oryza sativa Japonica Group]
 gi|218193367|gb|EEC75794.1| hypothetical protein OsI_12723 [Oryza sativa Indica Group]
 gi|222616333|gb|EEE52465.1| hypothetical protein OsJ_34631 [Oryza sativa Japonica Group]
          Length = 339

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 93/221 (42%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           V++GS  LD  L  GG   G I EIYG   SGKT L  HT+  + +         G   +
Sbjct: 102 VTTGSRELDKILD-GGIETGSITEIYGEFRSGKTQLC-HTLCVTCQLPLDQGGGEGKALY 159

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +DAE                      L+++ YAR    D ++ L+         LE   M
Sbjct: 160 IDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL---------LEAASM 210

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           ++ +    ++++DS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 211 MIET-RFALMIVDSATALY-RTDFSG-RGE----LSARQMHMAKFLRSLQKLADEFGVAV 263

Query: 198 VFINQMRMKI--GVMFGSPE-TTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++    MF  P+    GGN +   S+ RL +R+
Sbjct: 264 VITNQVVAQVDGSAMFAGPQIKPIGGNIMAHASTTRLALRK 304


>gi|254578216|ref|XP_002495094.1| ZYRO0B03190p [Zygosaccharomyces rouxii]
 gi|238937984|emb|CAR26161.1| ZYRO0B03190p [Zygosaccharomyces rouxii]
          Length = 432

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 92/208 (44%), Gaps = 23/208 (11%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  LG GG   G I E++G   +GK+ L  HT+A + +         G C 
Sbjct: 191 CLTTGSKNLDTLLG-GGMETGSITELFGEFRTGKSQLC-HTLAVTCQIPLDVGGGEGKCL 248

Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDI 148
           ++D E     +     A++ G+D    L N+  ++    +  + + D    ++      +
Sbjct: 249 YIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQIRLLDAAAQMMSESRFSL 308

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +V+DSV AL  R +  G    S   M      +AL++L      +  ++      ++  G
Sbjct: 309 VVVDSVMALY-RTDFSGRGELSARQMHLAKFMRALQRLADQFGVAV-VVTNQVVAQVDGG 366

Query: 209 VMFGS-PETTTGGNALKFYSSVRLDIRR 235
           + F   P+   GGN +   S+ RL  R+
Sbjct: 367 MSFNPDPKKPIGGNIMAHSSTTRLGFRK 394


>gi|15679687|ref|NP_276804.1| DNA repair and recombination protein RadB [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|6225911|sp|O27728|RADB_METTH RecName: Full=DNA repair and recombination protein radB
 gi|2622824|gb|AAB86165.1| DNA repair protein Rad51 homolog [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 234

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 18/189 (9%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           +D  LG GG  +  I + YGP  SGKT + +    ++ + G    F+D E  L     R+
Sbjct: 19  IDRILG-GGVERRTITQFYGPPGSGKTNITIKLAVETARRGKNTVFIDTEGGLSVERIRQ 77

Query: 115 LGVDL-----KNLLISQPDT----GEQALEITDMLVRSG-AVDIIVIDSVAALTPRAEIE 164
           +  D+      ++++ +P +    GE        L   G + D++V+DS  AL    E  
Sbjct: 78  VSGDIFDRVADSIIVFEPSSFTEQGEALQRTFSFLKTHGDSTDLVVLDSAVALYRLKEGN 137

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
                   G Q  L+ Q  R+            V  NQ+    G       +  GG  L+
Sbjct: 138 ASSFNLDLGRQMFLLLQMARRF-------DLAAVITNQIYSITGDDGREYVSPVGGTLLR 190

Query: 225 FYSSVRLDI 233
           ++S V +++
Sbjct: 191 YWSKVMVEL 199


>gi|308159744|gb|EFO62265.1| DNA repair protein RAD51 [Giardia lamblia P15]
          Length = 389

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 96/222 (43%), Gaps = 27/222 (12%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-QSQKTGGTCAFVDA 103
           I  +S+G   LD  LG GG     I E++G   SGKT L  HTIA  +Q  G   A++D 
Sbjct: 155 IRRISTGCSDLDALLG-GGIESMAITEVFGEFRSGKTQLC-HTIAVTAQLDGSRVAYLDT 212

Query: 104 EHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGA---VDIIVID 152
           E           A +  +D    L  +  ++  T EQ +E+        +     ++++D
Sbjct: 213 EGTFRPEKIGPIAERYKLDPTTALSKIAYARAYTHEQQIELLAAAAEQMSEKKFALLIVD 272

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI--GVM 210
           S+ AL  R +  G  GE L   Q +L  Q L  L          +   NQ+  ++    M
Sbjct: 273 SLTALF-RVDFTG-RGE-LADRQQKL-GQHLASLAKLADEFNIAIFVTNQVMAQVDGAAM 328

Query: 211 FGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
           F + P+   GG+ L   S+ RL +R      RV  I D  S+
Sbjct: 329 FTADPKKPIGGHILAHASTTRLYLRKGRGNNRVAKIYDSPSL 370


>gi|110669058|ref|YP_658869.1| DNA repair and recombination protein RadB [Haloquadratum walsbyi
           DSM 16790]
 gi|109626805|emb|CAJ53273.1| DNA repair and recombination protein RadB [Haloquadratum walsbyi
           DSM 16790]
          Length = 257

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 90/218 (41%), Gaps = 31/218 (14%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           ++S+G   LD  LG GGF +G + ++YGP ++GKT + L     +  T     +VD E  
Sbjct: 4   LLSTGCQSLDSLLG-GGFERGTVTQVYGPPAAGKTNIMLSAALHTAATDSMAVYVDTE-G 61

Query: 107 LDSIYARKLG--------VDLKNLLISQ------PDTGEQALEITDMLVRSGAVDIIVID 152
           + S   R++            ++ L SQ       D   QA  + D    +   D+I++D
Sbjct: 62  ISSDRFRQIADGVVDDSSSVDRDSLTSQVIMSDAHDFEAQATAVRDTAEFANRADLIILD 121

Query: 153 SVAAL-----TPRAEIEGDMG------ESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           S         T    +E ++G      E+    +       LR+LTS I+    +    N
Sbjct: 122 SATGFYRLQRTLGGTLENNIGTDGASSENTERTETADGGDTLRRLTSQITHLLSLARKHN 181

Query: 202 QMRMKIGVMFGSPET----TTGGNALKFYSSVRLDIRR 235
              +    +F  P+T      GG  L+ ++   L + R
Sbjct: 182 LAVVITNQVFTDPDTDRVRPLGGYTLEHWTGAVLRLER 219


>gi|159118412|ref|XP_001709425.1| DNA repair protein RAD51 [Giardia lamblia ATCC 50803]
 gi|33667818|gb|AAQ24509.1| Dmc1a [Giardia intestinalis]
 gi|157437541|gb|EDO81751.1| DNA repair protein RAD51 [Giardia lamblia ATCC 50803]
          Length = 389

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 96/222 (43%), Gaps = 27/222 (12%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-QSQKTGGTCAFVDA 103
           I  +S+G   LD  LG GG     I E++G   SGKT L  HTIA  +Q  G   A++D 
Sbjct: 155 IRRISTGCSDLDALLG-GGIESMAITEVFGEFRSGKTQLC-HTIAVTAQLDGSRVAYLDT 212

Query: 104 EHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGA---VDIIVID 152
           E           A +  +D    L  +  ++  T EQ +E+        +     +++ID
Sbjct: 213 EGTFRPEKIGPIAERYKLDPTTTLSRIAYARAYTHEQQIELLAAAAEQMSEKKFALLIID 272

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI--GVM 210
           S+ AL  R +  G  GE L   Q +L  Q L  L          +   NQ+  ++    M
Sbjct: 273 SLTALF-RVDFTG-RGE-LADRQQKL-GQHLASLAKLADEFNIAIFVTNQVMAQVDGAAM 328

Query: 211 FGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
           F + P+   GG+ L   S+ RL +R      RV  I D  S+
Sbjct: 329 FTADPKKPIGGHILAHASTTRLYLRKGRGNNRVAKIYDSPSL 370


>gi|326784133|ref|YP_004324526.1| UvsX RecA-like protein [Prochlorococcus phage Syn1]
 gi|310004865|gb|ADO99256.1| UvsX RecA-like protein [Prochlorococcus phage Syn1]
          Length = 344

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 109/261 (41%), Gaps = 21/261 (8%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQS---QKTGGTCAFVDAEHALDSIYARKLGVD 118
           GG P  +I  + G   +GKT   L  +          G   F + E A+         +D
Sbjct: 49  GGIPSNKITALAGESGTGKTFFCLSVVRNFLDIDPDAGVIYF-ETESAISKQMIESRSID 107

Query: 119 LKNLLISQPDTGEQ----ALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEG--DMG 168
            K ++I   +T E+     + I D  +     D    + V+DS+  L    E++   D  
Sbjct: 108 SKRMVIMPINTIEEFRTTTVRIIDKYMEQPKEDRKPLMFVLDSLGMLATNKEVQDATDDK 167

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +     +++L+    R LT  + ++   ++  N     IG    + E   GG+ LK+ +S
Sbjct: 168 QVRDMTKSQLIKSCFRILTLKMGKANIPMIVTNHTYDVIGSYVPTKE-MGGGSGLKYSAS 226

Query: 229 VRLDIRRVGSIKDKDSIT--GNQTRVKVVKNKMASPFKQVEFDIMYGE-GISFFGELIDL 285
               I  +G  K+KD  T  GN  + +  K+++     +VE  + +   G+  +  L++L
Sbjct: 227 T---IIYLGKKKEKDGTTLIGNIIKCEAKKSRLTREGSKVETRLFFDHRGLEKYFGLLEL 283

Query: 286 GVKASIVDKSGAWFSFKGQRL 306
           G +A +       +   G+++
Sbjct: 284 GERAGLWANRAGRYEIAGKKI 304


>gi|254172307|ref|ZP_04878983.1| ATPase, RecA superfamily [Thermococcus sp. AM4]
 gi|214034203|gb|EEB75029.1| ATPase, RecA superfamily [Thermococcus sp. AM4]
          Length = 237

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
           G I + ++ V SG  GLD  +G GGF  GR+  I GP  SGKTT+ +  + +  + G   
Sbjct: 4   GEILKSLDRVPSGVPGLDEIIG-GGFLPGRVYLITGPPGSGKTTMGVQFLVEGARNGEKG 62

Query: 99  AFV 101
            FV
Sbjct: 63  VFV 65


>gi|148508123|gb|ABQ75917.1| DNA repair and recombination protein RadB [uncultured haloarchaeon]
          Length = 257

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 90/218 (41%), Gaps = 31/218 (14%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           ++S+G   LD  LG GGF +G + ++YGP ++GKT + L     +  T     +VD E  
Sbjct: 4   LLSTGCQSLDSLLG-GGFERGTVTQVYGPPAAGKTNIMLSAALHTAATDSMAVYVDTE-G 61

Query: 107 LDSIYARKLG--------VDLKNLLISQ------PDTGEQALEITDMLVRSGAVDIIVID 152
           + S   R++            ++ L SQ       D   QA  + D    +   D+I++D
Sbjct: 62  ISSDRFRQIADGVVDDSSSVDRDSLTSQVIMSDAHDFEAQATAVRDTAEFANRADLIILD 121

Query: 153 SVAAL-----TPRAEIEGDMG------ESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           S         T    +E ++G      E+    +       LR+LTS I+    +    N
Sbjct: 122 SATGFYRLQRTLGGTLENNIGTDGASSENTERTETADGGDTLRRLTSQITHLLSLARKHN 181

Query: 202 QMRMKIGVMFGSPET----TTGGNALKFYSSVRLDIRR 235
              +    +F  P+T      GG  L+ ++   L + R
Sbjct: 182 LAVVITNQVFTDPDTDRVRPLGGYTLEHWTGAVLRLER 219


>gi|68485285|ref|XP_713476.1| hypothetical protein CaO19.11236 [Candida albicans SC5314]
 gi|68485358|ref|XP_713440.1| hypothetical protein CaO19.3752 [Candida albicans SC5314]
 gi|46434928|gb|EAK94324.1| hypothetical protein CaO19.3752 [Candida albicans SC5314]
 gi|46434968|gb|EAK94361.1| hypothetical protein CaO19.11236 [Candida albicans SC5314]
 gi|238879694|gb|EEQ43332.1| DNA repair protein RAD51 [Candida albicans WO-1]
          Length = 361

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 110/245 (44%), Gaps = 36/245 (14%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  LG GG   G I E++G   +GK+ L  HT+A + +         G C 
Sbjct: 118 CLTTGSKQLDTLLG-GGVETGSITEVFGEFRTGKSQLC-HTLAVTCQLPIDMGGGEGKCL 175

Query: 100 FVDAE-----HALDSIYARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVD 147
           ++D E     + L SI A++ G++    L N+  ++    E  L + ++   ++      
Sbjct: 176 YIDTEGTFRPNRLVSI-AQRYGLNPNDCLDNVAYARAYNAEHQLNLLNIAAEMMAESRFS 234

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++++DS+ +L  R +  G  GE L   Q  + ++ +R L          +V  NQ+  ++
Sbjct: 235 LLIVDSIMSLY-RTDYAG-RGE-LSARQTHV-AKFMRTLQRLADEFGIAVVITNQVVAQV 290

Query: 208 GVMFG----SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKN 257
             M G     P+   GGN +   S+ RL  +      R+  I D   +  ++    + ++
Sbjct: 291 DGMSGMFNPDPKKPIGGNIIAHSSTTRLSFKKGRGETRICKIYDSPCLPESECIFAIYED 350

Query: 258 KMASP 262
            +  P
Sbjct: 351 GIGDP 355


>gi|18461375|gb|AAL71908.1|AF265549_1 meiotic protein Dmc1B [Oryza sativa Indica Group]
          Length = 344

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 26/208 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  LD  LG GG     I E +G   SGKT LA HT+  S +         G  A+
Sbjct: 108 ITTGSQALDELLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSTQLPIHMHGGNGKVAY 165

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149
           +D E           A + G+D    L N++ ++  T E    +   L    A +   ++
Sbjct: 166 IDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLL 225

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DSV AL  R +  G  GE L   Q +L +Q L +LT         +   NQ+    G 
Sbjct: 226 IVDSVIALF-RVDFSGR-GE-LAERQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281

Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIRR 235
            +    P+   GG+ L   +++RL +R+
Sbjct: 282 GMFITDPKKPAGGHVLAHAATIRLMLRK 309


>gi|49475321|ref|YP_033362.1| DNA repair protein RadA [Bartonella henselae str. Houston-1]
 gi|49238127|emb|CAF27334.1| DNA repair protein [Bartonella henselae str. Houston-1]
          Length = 457

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 72/163 (44%), Gaps = 13/163 (7%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           Q V+ KG ++ L S     E    + SG   LD   G GGF +G ++ + G    GK+TL
Sbjct: 48  QNVH-KGRVVALTSLSGNIEDAPRIHSGIAELDRVTG-GGFVRGSVLLVGGDPGIGKSTL 105

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE-ITDMLVR 142
              T A   + G    +V  E A+  I  R   +D  N  +      E  +E I   L  
Sbjct: 106 LTQTAAALSRKGHHVIYVSGEEAVAQICLRAQRLDAANTKVKL--AAETNVEDILATLSE 163

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQAL 183
              +D+++IDS+  L        D  +S PG   Q R+ +QA+
Sbjct: 164 HKNLDMVIIDSIQTLW------SDAADSAPGTVTQVRISAQAM 200


>gi|119719925|ref|YP_920420.1| DNA repair and recombination protein RadA [Thermofilum pendens Hrk
           5]
 gi|119525045|gb|ABL78417.1| DNA repair and recombination protein RadA [Thermofilum pendens Hrk
           5]
          Length = 358

 Score = 45.1 bits (105), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 105/238 (44%), Gaps = 27/238 (11%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFE---GIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           A +   QR+  +G   +  +  ++FE    IE +S+G   LD  L  GG   G I E  G
Sbjct: 95  AIIRSAQRLVNRGE--EFITAKTLFEKRKNIEYISTGVRSLDDLLE-GGIEVGSITEFIG 151

Query: 75  PESSGKTTLA--LHTIAQSQK-TGGTCA---FVDAEHALDS----IYARKLGVD----LK 120
              +GKT +   L  + Q  K  GG  A   +VD E           AR  G+D    L+
Sbjct: 152 EFGAGKTQICHQLSVMVQLPKDKGGLNARALYVDTEGTFRPERIVQIARARGLDPEKTLE 211

Query: 121 NLLISQPDTGEQALEITD---MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           N++ ++    +  + + D     +    + +I++DS+     RAE  G   E+L   Q +
Sbjct: 212 NIIYARAYNSDHQMLLIDEAKKYIEKYNIRLIIVDSLINHF-RAEYPGR--ENLASRQQK 268

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           L ++ + +L    S     +V  NQ+     + FG+P    GGN +    + R+ +R+
Sbjct: 269 L-NKHISQLHRLASLYNLAVVVTNQVMASPDIFFGNPLKPAGGNIMAHGCTYRIWLRK 325


>gi|226501424|ref|NP_001141379.1| hypothetical protein LOC100273470 [Zea mays]
 gi|194698360|gb|ACF83264.1| unknown [Zea mays]
 gi|194704244|gb|ACF86206.1| unknown [Zea mays]
 gi|195626386|gb|ACG35023.1| meiotic recombination protein DMC1 [Zea mays]
          Length = 344

 Score = 45.1 bits (105), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 26/208 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  LD  LG GG     I E +G   SGKT LA HT+  S +         G  A+
Sbjct: 108 ITTGSQALDELLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSTQLPIHMHGGNGKVAY 165

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149
           +D E           A + G+D    L N++ ++  T E    +   L    A +   ++
Sbjct: 166 IDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFKLL 225

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DSV AL  R +  G  GE L   Q +L +Q L +LT         +   NQ+    G 
Sbjct: 226 IVDSVIALF-RVDFSG-RGE-LAERQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281

Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIRR 235
            +    P+   GG+ L   +++RL +R+
Sbjct: 282 GMFITDPKKPAGGHVLAHAATIRLMLRK 309


>gi|3219787|sp|Q96449|DMC1_SOYBN RecName: Full=Meiotic recombination protein DMC1 homolog
 gi|1518157|gb|AAB07025.1| RecA/Rad51/DMC1-like protein [Glycine max]
          Length = 345

 Score = 45.1 bits (105), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 93/208 (44%), Gaps = 26/208 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  LD  LG GG     I E +G   SGKT LA HT+  S +         G  A+
Sbjct: 109 ITTGSQALDELLG-GGVETSAITEAFGEFRSGKTQLA-HTLCVSTQLPTNMRGGNGKVAY 166

Query: 101 VDAEHAL--DSIY--ARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149
           +D E     D I   A + G+D    L N++ ++  T E    +   L    + +   ++
Sbjct: 167 IDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLL 226

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           ++DSV AL  R +  G  GE L   Q +L +Q L +L          +   NQ+      
Sbjct: 227 IVDSVIALF-RVDFSG-RGE-LADRQQKL-AQMLSRLIKIAEEFNVAVYMTNQVISDPGG 282

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
           GV    P+   GG+ L   ++VRL  R+
Sbjct: 283 GVFVTDPKKPAGGHVLAHAATVRLMFRK 310


>gi|222154111|gb|ACM47235.1| disrupted meiotic cDNA 1 protein [Triticum aestivum]
          Length = 344

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 26/208 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  LD  LG GG     I E +G   SGKT LA HT+  S +         G  A+
Sbjct: 108 ITTGSQALDELLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSTQLPLHMHGGNGKVAY 165

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149
           +D E           A + G+D    L N++ ++  T E    +   L    A +   ++
Sbjct: 166 IDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLL 225

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DSV AL  R +  G  GE L   Q +L +Q L +LT         +   NQ+    G 
Sbjct: 226 IVDSVIALF-RVDFSGR-GE-LAERQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281

Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIRR 235
            +    P+   GG+ L   +++RL +R+
Sbjct: 282 GMFITDPKKPAGGHVLAHAATIRLMLRK 309


>gi|241958150|ref|XP_002421794.1| DNA repair protein rad51 homologue, putative [Candida dubliniensis
           CD36]
 gi|223645139|emb|CAX39736.1| DNA repair protein rad51 homologue, putative [Candida dubliniensis
           CD36]
          Length = 361

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 110/245 (44%), Gaps = 36/245 (14%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  LG GG   G I E++G   +GK+ L  HT+A + +         G C 
Sbjct: 118 CLTTGSKQLDTLLG-GGIETGSITEVFGEFRTGKSQLC-HTLAVTCQLPIDMGGGEGKCL 175

Query: 100 FVDAE-----HALDSIYARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVD 147
           ++D E     + L SI A++ G++    L N+  ++    E  L + ++   ++      
Sbjct: 176 YIDTEGTFRPNRLVSI-AQRYGLNPNDCLDNVAYARAYNAEHQLNLLNIASQMMAESRFS 234

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++++DS+ +L  R +  G  GE L   Q  + ++ +R L          ++  NQ+  ++
Sbjct: 235 LLIVDSIMSLY-RTDYAG-RGE-LSARQTHV-ARFMRTLQRLADEFGIAVIITNQVVAQV 290

Query: 208 GVMFG----SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKN 257
             M G     P+   GGN +   S+ RL  +      R+  I D   +  ++    + ++
Sbjct: 291 DGMSGMFNPDPKKPIGGNIIAHASTTRLSFKKGRGETRICKIYDSPCLPESECVFAIYED 350

Query: 258 KMASP 262
            +  P
Sbjct: 351 GIGDP 355


>gi|91205131|ref|YP_537486.1| DNA repair protein RadA [Rickettsia bellii RML369-C]
 gi|157827536|ref|YP_001496600.1| DNA repair protein RadA [Rickettsia bellii OSU 85-389]
 gi|122425933|sp|Q1RJR7|RADA_RICBR RecName: Full=DNA repair protein RadA homolog; AltName: Full=DNA
           repair protein Sms homolog
 gi|91068675|gb|ABE04397.1| DNA repair protein RadA [Rickettsia bellii RML369-C]
 gi|157802840|gb|ABV79563.1| predicted repair protein [Rickettsia bellii OSU 85-389]
          Length = 448

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 1/106 (0%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LD  LG GG   G  + I G    GK+TL L  +A S  +   C ++  E +LD I  R 
Sbjct: 73  LDRVLG-GGLVLGSAILIGGDPGIGKSTLLLQLVAGSFASKVKCLYITGEESLDQIKLRA 131

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           L +DL N   +          I  +    G +D++VIDS+  +  R
Sbjct: 132 LRLDLVNDKTNILAANNLEDIIASLEANKGNIDLVVIDSIQTIATR 177


>gi|242064614|ref|XP_002453596.1| hypothetical protein SORBIDRAFT_04g008730 [Sorghum bicolor]
 gi|241933427|gb|EES06572.1| hypothetical protein SORBIDRAFT_04g008730 [Sorghum bicolor]
          Length = 344

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 26/208 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  LD  LG GG     I E +G   SGKT LA HT+  S +         G  A+
Sbjct: 108 ITTGSQALDELLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSTQLPIHMHGGNGKVAY 165

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149
           +D E           A + G+D    L N++ ++  T E    +   L    A +   ++
Sbjct: 166 IDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLL 225

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DSV AL  R +  G  GE L   Q +L +Q L +LT         +   NQ+    G 
Sbjct: 226 IVDSVIALF-RVDFSG-RGE-LAERQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281

Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIRR 235
            +    P+   GG+ L   +++RL +R+
Sbjct: 282 GMFITDPKKPAGGHVLAHAATIRLMLRK 309


>gi|149246169|ref|XP_001527554.1| DNA repair protein RAD51 [Lodderomyces elongisporus NRRL YB-4239]
 gi|146447508|gb|EDK41896.1| DNA repair protein RAD51 [Lodderomyces elongisporus NRRL YB-4239]
          Length = 362

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 109/247 (44%), Gaps = 40/247 (16%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  LG GG   G I E++G   +GK+ L  HT++ + +         G C 
Sbjct: 120 CLTTGSKQLDTLLG-GGIETGSITEVFGEFRTGKSQLC-HTLSVTCQLPIDMGGGEGKCL 177

Query: 100 FVDAE-----HALDSIYARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVD 147
           ++D E     + L SI A + G++    L N+  ++    E  L + ++   ++      
Sbjct: 178 YIDTEGTFRPNRLVSI-AERYGLNANDCLDNVAYARAYNAEHQLNLLNLAAEMMAESRFS 236

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRM 205
           ++++DS+ +L  R +  G  GE    + AR  S A  +R L          +V  NQ+  
Sbjct: 237 LLIVDSIMSLY-RTDYAG-RGE----LSARQTSVAKFMRTLQRLADEFGIAVVITNQVVA 290

Query: 206 KIGVMFG----SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
           ++  M G     P+   GGN +   S+ RL  +      R+  I D   +  ++    + 
Sbjct: 291 QVDGMSGMYNPDPKKPIGGNIIAHSSTTRLSFKKGRAETRICKIYDSPCLPESECVFAIY 350

Query: 256 KNKMASP 262
           ++ +  P
Sbjct: 351 EDGIGDP 357


>gi|261402815|ref|YP_003247039.1| DNA repair and recombination protein RadB [Methanocaldococcus
           vulcanius M7]
 gi|261369808|gb|ACX72557.1| DNA repair and recombination protein RadB [Methanocaldococcus
           vulcanius M7]
          Length = 213

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 44/218 (20%), Positives = 101/218 (46%), Gaps = 26/218 (11%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD-- 118
           +G   KG I +IYGP   GKT + L     S   GG   ++D E  +     ++L  +  
Sbjct: 7   LGNANKGMITQIYGPPGVGKTNICLINTINSINQGGKVIYLDTEGGMSIERIKQLAPENY 66

Query: 119 ---LKNLLISQP-DTGEQALEI-TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
              L+N++I    D  EQ   I  ++ + +  V++IV+D++ +L  + E+  +  +++  
Sbjct: 67  KNILENMIIYNVFDFYEQNNIIQKEIPLIANNVNLIVVDNITSLY-KLELSDEANKNI-- 123

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
           +  +++   ++ L          ++  NQ++  +     S     GG  L+++S   + +
Sbjct: 124 LLNKMLGNQVKTLLKLAKTKNLAVIITNQVKETVNGFEAS-----GGRLLEYWSKCIIRL 178

Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
            ++            +TR+ +++  + +  +++EF I+
Sbjct: 179 EKL-----------EKTRIAILEKHLYAGEEKLEFKIV 205


>gi|14669856|dbj|BAB62025.1| RiLIM15B [Oryza sativa]
          Length = 344

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 26/208 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  LD  LG GG     I E +G   SGKT LA HT+  S +         G  A+
Sbjct: 108 ITTGSQALDELLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSTQLPIHMHGGNGKVAY 165

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149
           +D E           A + G+D    L N++ ++  T E    +   L    A +   ++
Sbjct: 166 IDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLL 225

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DSV AL  R +  G  GE L   Q +L +Q L +LT         +   NQ+    G 
Sbjct: 226 IVDSVIALF-RVDFSGR-GE-LAKRQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281

Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIRR 235
            +    P+   GG+ L   +++RL +R+
Sbjct: 282 GMFITDPKKPAGGHVLAHAATIRLMLRK 309


>gi|295661572|ref|XP_002791341.1| meiotic recombination protein DMC1 [Paracoccidioides brasiliensis
           Pb01]
 gi|226280903|gb|EEH36469.1| meiotic recombination protein DMC1 [Paracoccidioides brasiliensis
           Pb01]
          Length = 541

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 105/237 (44%), Gaps = 37/237 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IA 89
           M+LG Q    + +  +S+GS   D  L  GGF    I E+YG    GKT L+ HT   +A
Sbjct: 12  MELGHQR---KRVVKISTGSKQFDSILA-GGFQSMSISEVYGEFRCGKTQLS-HTMSVVA 66

Query: 90  QSQK----TGGTCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEIT 137
           Q  K      G  A++D E        +  A + GVD    L+N+  ++    E  LE+ 
Sbjct: 67  QLPKDMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDSDSALENITYARALNSEHQLELL 126

Query: 138 DMLVRS---GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           + L +    G   +++IDS+     R +  G  GE L   Q +L +Q L KL        
Sbjct: 127 NTLSKEFAGGEYRLLIIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFN 182

Query: 195 CILVFINQMRMKIG--VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241
             ++  NQ++   G   +F   +     GG+ L   S+ R+ +R      RV  I+D
Sbjct: 183 VCVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTRVLLRKGRGEERVAKIQD 239


>gi|224107947|ref|XP_002314664.1| predicted protein [Populus trichocarpa]
 gi|222863704|gb|EEF00835.1| predicted protein [Populus trichocarpa]
          Length = 352

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 92/208 (44%), Gaps = 26/208 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-------QSQKTGGTCAF 100
           +++GS  LD  LG GG     I E +G   SGKT LA HT+        Q     G  A+
Sbjct: 107 ITTGSQALDELLG-GGIETSAITEAFGEFRSGKTQLA-HTLCVSTQLPTQMHGGNGKVAY 164

Query: 101 VDAEHAL--DSIY--ARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149
           +D E     D I   A + G+D    L N++ ++  T E    +   L    + +   ++
Sbjct: 165 IDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPYRLL 224

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           ++DSV AL  R +  G  GE L   Q +L +Q L +L          +   NQ+      
Sbjct: 225 IVDSVIALF-RVDFTG-RGE-LAERQQKL-AQMLSRLIKIAEEFNVAVYMTNQVIADPGG 280

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
           G+    P+   GG+ L   +++RL  R+
Sbjct: 281 GMFISDPKKPAGGHVLAHAATIRLMFRK 308


>gi|30578211|gb|AAP35102.1|AF485823_1 DMC1-A [Giardia intestinalis]
          Length = 389

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 101/225 (44%), Gaps = 33/225 (14%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-QSQKTGGTCAFVDA 103
           I  +S+G   LD  LG GG     I E++G   SGKT L  HTIA  +Q  G   A++D 
Sbjct: 155 IRRISTGCSDLDALLG-GGIESMAITEVFGEFRSGKTQLC-HTIAVTAQLDGSRVAYLDT 212

Query: 104 EHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGA---VDIIVID 152
           E           A +  +D    L  +  ++  T EQ +E+        +     +++ID
Sbjct: 213 EGTFRPEKIGPIAERYKLDPTTTLSRIAYARAYTHEQQIELLAAAAEQMSEKKFALLIID 272

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQ--ALRKLTSSISRSKCILVFI-NQMRMKI-- 207
           S+ AL  R +  G  GE L   Q +L     +L KL    +    I +F+ NQ+  ++  
Sbjct: 273 SLTALF-RVDFTG-RGE-LADRQQKLGQHLASLAKLADGFN----IAIFVTNQVMAQVDG 325

Query: 208 GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
             MF + P+   GG+ L   S+ RL +R      RV  I D  S+
Sbjct: 326 AAMFTADPKKPIGGHILAHASTTRLYLRKGRGNNRVAKIYDSPSL 370


>gi|73668572|ref|YP_304587.1| DNA repair and recombination protein RadB [Methanosarcina barkeri
           str. Fusaro]
 gi|72395734|gb|AAZ70007.1| DNA repair protein [Methanosarcina barkeri str. Fusaro]
          Length = 243

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 18/151 (11%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           +++SSG   LD  LG GGF KG + +I+G   +GKT + +    +  K G    F+D E 
Sbjct: 24  KLLSSGCKPLDELLG-GGFEKGIVTQIFGAAGTGKTNVCIQLAVECVKQGQRVIFIDTEG 82

Query: 106 ALDSIYARKLGVDLKNL----LISQPDTGEQALEITDMLVR--SGAVDIIVIDSVAALTP 159
              + + +  G + K L    +I +P   E+       + R  S  + ++++DS  +   
Sbjct: 83  LSPTRFKQIAGDNAKELARSIIIYEPLNFEEQYAAVREVERIASENIGLVILDSATSYY- 141

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           R E+E D      GM++R      R+L S I
Sbjct: 142 RFELEDDE----TGMKSR------RELASQI 162


>gi|7229683|gb|AAF42940.1|AF234170_1 DMC1 protein [Hordeum vulgare]
 gi|326513156|dbj|BAK06818.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 344

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 26/208 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  LD  LG GG     I E +G   SGKT LA HT+  S +         G  A+
Sbjct: 108 ITTGSQALDELLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSTQLPLHMHGGNGKVAY 165

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149
           +D E           A + G+D    L N++ ++  T E    +   L    A +   ++
Sbjct: 166 IDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLL 225

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DSV AL  R +  G  GE L   Q +L +Q L +LT         +   NQ+    G 
Sbjct: 226 IVDSVIALF-RVDFSGR-GE-LAERQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281

Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIRR 235
            +    P+   GG+ L   +++RL +R+
Sbjct: 282 GMFITDPKKPAGGHVLAHAATIRLMLRK 309


>gi|288559762|ref|YP_003423248.1| DNA repair and recombination protein RadB [Methanobrevibacter
           ruminantium M1]
 gi|288542472|gb|ADC46356.1| DNA repair and recombination protein RadB [Methanobrevibacter
           ruminantium M1]
          Length = 231

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 10/106 (9%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL-GVDL- 119
           GG  K  I +IYGP   GKT ++L+      ++G    ++D E  +     +++ G D  
Sbjct: 25  GGIDKRTITQIYGPPGVGKTNVSLNIAVNVARSGKKVIYIDTEGGISVERIKQISGEDFD 84

Query: 120 ---KNLLISQPDT---GEQALE-ITDMLVRSGA-VDIIVIDSVAAL 157
              KN+++ +P +    E+ LE I D L  + + V++IV+DS  AL
Sbjct: 85  NVAKNIVVFEPTSFKEQEEDLELIEDWLASNNSEVELIVLDSAVAL 130


>gi|321471848|gb|EFX82820.1| hypothetical protein DAPPUDRAFT_299714 [Daphnia pulex]
          Length = 341

 Score = 44.7 bits (104), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 90/210 (42%), Gaps = 29/210 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGGT---CAFV 101
           V++GS  LD  LG GG   G I EI+G   +GKT L L      Q    +GG    C ++
Sbjct: 104 VTTGSKELDKLLG-GGIETGSITEIFGEFRTGKTQLCLTLAVTCQLPIDSGGAEGKCLYI 162

Query: 102 DAEHALDS----IYARKLGVD----LKNLLISQP---DTGEQALEITDMLVRSGAVDIIV 150
           D E           A + G+     L N+  ++    D   Q L     ++      +++
Sbjct: 163 DTEGTFRPERLLAVAERYGLSGSDVLDNVACARAFNTDHQSQLLIQASAMMADSRYALLI 222

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMKI- 207
           +DS  AL  R +  G  GE    + AR M  A  LR L          +V  NQ+  ++ 
Sbjct: 223 VDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVD 276

Query: 208 -GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
              MF + P+   GGN +   S+ RL +R+
Sbjct: 277 GAAMFAADPKKPIGGNIMAHASTTRLYLRK 306


>gi|115484153|ref|NP_001065738.1| Os11g0146800 [Oryza sativa Japonica Group]
 gi|21322144|gb|AAK55555.2|AF375982_1 Dmc1 [Oryza sativa Japonica Group]
 gi|14588672|dbj|BAB61838.1| RiLIM15B [Oryza sativa]
 gi|18700485|dbj|BAB85214.1| DMC1 [Oryza sativa Japonica Group]
 gi|21805945|gb|AAM76792.1| Dmc1 protein type B [Oryza sativa Indica Group]
 gi|113644442|dbj|BAF27583.1| Os11g0146800 [Oryza sativa Japonica Group]
          Length = 344

 Score = 44.7 bits (104), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 26/208 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  LD  LG GG     I E +G   SGKT LA HT+  S +         G  A+
Sbjct: 108 ITTGSQALDELLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSTQLPIHMHGGNGKVAY 165

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149
           +D E           A + G+D    L N++ ++  T E    +   L    A +   ++
Sbjct: 166 IDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLL 225

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DSV AL  R +  G  GE L   Q +L +Q L +LT         +   NQ+    G 
Sbjct: 226 IVDSVIALF-RVDFSGR-GE-LAERQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281

Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIRR 235
            +    P+   GG+ L   +++RL +R+
Sbjct: 282 GMFITDPKKPAGGHVLAHAATIRLMLRK 309


>gi|261199103|ref|XP_002625953.1| meiotic recombinase Dmc1 [Ajellomyces dermatitidis SLH14081]
 gi|239595105|gb|EEQ77686.1| meiotic recombinase Dmc1 [Ajellomyces dermatitidis SLH14081]
          Length = 337

 Score = 44.7 bits (104), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 105/237 (44%), Gaps = 37/237 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IA 89
           M+LG Q    + +  +S+GS   D  L  GGF    I E+YG    GKT L+ HT   +A
Sbjct: 86  MELGHQR---KRVVRISTGSKQFDSILA-GGFQSMSISEVYGEFRCGKTQLS-HTMSVVA 140

Query: 90  QSQK----TGGTCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEIT 137
           Q  K      G  A++D E        +  A + GVD    L+N+  ++    E  LE+ 
Sbjct: 141 QLPKDMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELL 200

Query: 138 DMLVRS---GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           + L +    G   +++IDS+     R +  G  GE L   Q +L +Q L KL        
Sbjct: 201 NTLAKEFAGGEYRLLIIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFN 256

Query: 195 CILVFINQMRMKIG--VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241
             ++  NQ++   G   +F   +     GG+ L   S+ R+ +R      RV  I+D
Sbjct: 257 VCVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTRVLLRKGRGDERVAKIQD 313


>gi|91774054|ref|YP_566746.1| DNA repair and recombination protein RadB [Methanococcoides
           burtonii DSM 6242]
 gi|121691579|sp|Q12U80|RADB_METBU RecName: Full=DNA repair and recombination protein radB
 gi|91713069|gb|ABE52996.1| DNA repair and recombination protein RadB [Methanococcoides
           burtonii DSM 6242]
          Length = 225

 Score = 44.7 bits (104), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 100/226 (44%), Gaps = 31/226 (13%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE-------HAL 107
           LD  LG GGF  G + +I+G   SGKT + L    +  K G    F+D E         +
Sbjct: 15  LDELLG-GGFESGVVTQIFGEAGSGKTNICLQLAIECVKKGKKAIFIDTEGLSADRFKQI 73

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQ---ALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
               ARK+  D   ++I +P + E+   A+  T+  + +  V +I++DS  A   R E++
Sbjct: 74  AGENARKIAQD---IIIFEPHSFEEQYSAVRETEK-ISTENVGVIIVDSATAYY-RFELD 128

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
            D   S+     R +S  +  L S   +   ++V  NQ+   I      P    GG++L+
Sbjct: 129 -DEDSSI--RTRRELSNQIGFLHSLARKRDIVVVITNQVYSDIKSNSLKP---IGGSSLE 182

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
             S   + + + G        TG++ R K+ K++        EF I
Sbjct: 183 HISKTIIQLEKTG--------TGSR-RAKIWKHRSRPEGTTCEFTI 219


>gi|299889|gb|AAB26404.1| RecA [Pseudomonas stutzeri]
          Length = 47

 Score = 44.7 bits (104), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 33/46 (71%), Gaps = 2/46 (4%)

Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLD 56
          +K +AL AAL QI++ +GKGA+M++G      + I  +S+GSLGLD
Sbjct: 4  NKKRALAAALGQIEKQFGKGAVMRMGDHDR--QAIPSISTGSLGLD 47


>gi|308161798|gb|EFO64232.1| Dmc1b [Giardia lamblia P15]
          Length = 368

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 106/239 (44%), Gaps = 51/239 (21%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------G 95
           E ++ +S+G    +  LG GG     I E++G   +GKT L  HT+A + +         
Sbjct: 126 EQVKRLSTGCADFNALLG-GGVETMSITEVFGEFRTGKTQLC-HTLAVTAQLPVSKGGGA 183

Query: 96  GTCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDMLVR---SG 144
           G   ++D E        +  A + G++    L N+++++  T EQ +E    L +     
Sbjct: 184 GKTVYIDTEGTFRPEKVAPIAERFGLNPKKALDNIMVARVYTHEQQIECITALPKLMIEN 243

Query: 145 AVDIIVIDSVAAL-----TPRAEI---EGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
              ++++DS+ AL     T R E+   +  +G+ L G         L KL    +    +
Sbjct: 244 QFSLVIVDSLTALFRVDFTGRGELADRQQKLGQHLSG---------LAKLADEFN----L 290

Query: 197 LVFI-NQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
            +F+ NQ+  ++    MF + P+   GG+ L   S+ RL +R      RV  I D  S+
Sbjct: 291 AIFVTNQVMAQVDGAAMFTADPKKPIGGHILAHASTTRLYLRKGRGDTRVAKIYDSPSL 349


>gi|169840822|ref|ZP_02873935.1| hypothetical protein cdivTM_26973 [candidate division TM7
          single-cell isolate TM7a]
          Length = 61

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
          YG+GAIM+LG    +   I  +S+GSL LDIALG+GG  +G ++        GK  L
Sbjct: 2  YGEGAIMKLGENTKM--NIRAISTGSLNLDIALGVGGVQEGELLRFMEQSLRGKLLL 56


>gi|229552865|ref|ZP_04441590.1| DNA repair protein RadA [Lactobacillus rhamnosus LMS2-1]
 gi|229313734|gb|EEN79707.1| DNA repair protein RadA [Lactobacillus rhamnosus LMS2-1]
          Length = 396

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 25/172 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V +G   L+  LG GG   G +V I G    GK+TL L    Q   TGGT  +V  E + 
Sbjct: 12  VKTGLAELNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSGQLASTGGTVLYVSGEESA 70

Query: 108 DSIYAR--KLGVDLKNLLISQPDTGEQALE-ITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
             I  R  +LGV    + +  P+T   ++E + D +      D +VIDSV  +       
Sbjct: 71  SQIKMRAGRLGVANSGMYL-YPETDMPSIENVIDQM----QPDYVVIDSVQTM------- 118

Query: 165 GDMGESLPGMQARLMSQA-LRKLTSS---ISRSKCILVFINQMRMKIGVMFG 212
                ++P M + + S A +R++T+    I++SK + +FI     K G + G
Sbjct: 119 -----NVPDMNSAVGSVAQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAG 165


>gi|162457755|ref|NP_001104918.1| DNA repair protein RAD51 homolog A [Zea mays]
 gi|55976364|sp|Q67EU8|R51A1_MAIZE RecName: Full=DNA repair protein RAD51 homolog A; AltName:
           Full=Rad51-like protein A; Short=RAD51A; AltName:
           Full=ZmRAD51a
 gi|4886752|gb|AAD32029.1|AF079428_1 RAD51 homolog RAD51A [Zea mays]
          Length = 340

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 93/221 (42%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT------IAQSQKTG-GTCAF 100
           V++GS  LD  L  GG   G I EIYG   SGKT L  HT      +   Q  G G   +
Sbjct: 103 VTTGSRELDKILE-GGIETGSITEIYGEFRSGKTQLC-HTPCVTCQLPLDQGGGEGKALY 160

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +DAE                      L+++ YAR    D ++ L+         LE   M
Sbjct: 161 IDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL---------LEAASM 211

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           ++ +    ++V+DS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 212 MIET-RFALMVVDSATALY-RTDFSG-RGE----LSARQMHMAKFLRSLQKLADEFGVAV 264

Query: 198 VFINQMRMKI--GVMFGSPE-TTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++    MF  P+    GGN +   S+ RL +R+
Sbjct: 265 VITNQVVAQVDGSAMFAGPQFKPIGGNIMAHASTTRLALRK 305


>gi|268323629|emb|CBH37217.1| DNA repair and recombination protein radB [uncultured archaeon]
          Length = 232

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 19/172 (11%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH--- 105
           SSG   +D  LG GGF    + ++YG   SGKT + L       KTG    F+D+E    
Sbjct: 8   SSGCKNIDELLG-GGFESRTVTQLYGEAGSGKTNICLQAAIGCAKTGKAVVFIDSEGFSP 66

Query: 106 ----ALDSIYARKLGVD--LKNLLISQPDTGEQAL----EITDMLVRSGAVDIIVIDSVA 155
                + S  A    V+   + ++I +P + EQ      EI  ++     V ++++DS A
Sbjct: 67  ERFIQIASSNAESEDVESIARRIIIYEPQSFEQQTSSIKEIETVIKEMDDVVLVILDS-A 125

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
            L  R E++ +    L     R+++  +  L     R   +++  NQ+   I
Sbjct: 126 TLFYRLELDEERSIYL----RRVLANQIEHLQELARRHDLVVIITNQVYADI 173


>gi|326427949|gb|EGD73519.1| rad51 protein [Salpingoeca sp. ATCC 50818]
          Length = 332

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 92/221 (41%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           +S GS  LD  L  GG   G I E++G   +GKT L  HT+A + +         G C +
Sbjct: 95  ISCGSKELDTLLQ-GGIETGSITEMFGEFRTGKTQLC-HTLAVTCQLPIDQGGAEGKCLY 152

Query: 101 VDA--------------------EHALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D                     E  LD++ YAR    D +  L+ Q            M
Sbjct: 153 IDTEGTFRPERLLAVAERYGLSGEDVLDNVAYARAYNSDHQMHLLQQASA---------M 203

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM--SQALRKLTSSISRSKCIL 197
           +  S    ++V+DS  AL  R +  G  GE    + AR M  +Q LR L          +
Sbjct: 204 MAES-RYALMVVDSATALF-RTDYSG-RGE----LSARQMALAQFLRTLMRLADEFGIAV 256

Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++    MF + P+   GGN +   S+ RL +R+
Sbjct: 257 VITNQVVAQVDGAAMFAADPKKPIGGNIMAHASTTRLYLRK 297


>gi|239609785|gb|EEQ86772.1| meiotic recombinase Dmc1 [Ajellomyces dermatitidis ER-3]
          Length = 337

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 105/237 (44%), Gaps = 37/237 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IA 89
           M+LG Q    + +  +S+GS   D  L  GGF    I E+YG    GKT L+ HT   +A
Sbjct: 86  MELGHQR---KRVVRISTGSKQFDSILA-GGFQSMSISEVYGEFRCGKTQLS-HTMSVVA 140

Query: 90  QSQK----TGGTCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEIT 137
           Q  K      G  A++D E        +  A + GVD    L+N+  ++    E  LE+ 
Sbjct: 141 QLPKDMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELL 200

Query: 138 DMLVRS---GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           + L +    G   +++IDS+     R +  G  GE L   Q +L +Q L KL        
Sbjct: 201 NTLAKEFAGGEYRLLIIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFN 256

Query: 195 CILVFINQMRMKIG--VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241
             ++  NQ++   G   +F   +     GG+ L   S+ R+ +R      RV  I+D
Sbjct: 257 VCVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTRVLLRKGRGDERVAKIQD 313


>gi|260944444|ref|XP_002616520.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238850169|gb|EEQ39633.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 339

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 105/244 (43%), Gaps = 34/244 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  LG GG   G I E++G   +GK+ L  HT+A + +         G C 
Sbjct: 95  CLTTGSKQLDTLLG-GGVETGSITEVFGEFRTGKSQLC-HTLAVTCQLPIDMGGGEGKCL 152

Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGE---QALEITDMLVRSGAVDI 148
           ++D E     +     A++ G++    L N+  ++    E   Q L     ++      +
Sbjct: 153 YIDTEGTFRPVRLVSIAQRYGLNPDDCLDNVAYARAYNAEHQFQLLHQAAQMMSESRFSL 212

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI- 207
           +++DS+ +L  R +  G  GE L   Q  + ++ +R L          +V  NQ+  ++ 
Sbjct: 213 LIVDSIMSLY-RTDYSG-RGE-LSARQTHV-AKFMRTLQRLADEFGIAVVITNQVVAQVD 268

Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               MF   P+   GGN +   S+ RL  +      R+  I D   +  ++    + ++ 
Sbjct: 269 GSAAMFNPDPKKPIGGNIIAHSSTTRLSFKKGRGEQRICKIYDSPCLPESECVFAIYEDG 328

Query: 259 MASP 262
           +  P
Sbjct: 329 IGDP 332


>gi|156849069|ref|XP_001647415.1| hypothetical protein Kpol_1018p90 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156118101|gb|EDO19557.1| hypothetical protein Kpol_1018p90 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 385

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 86/207 (41%), Gaps = 21/207 (10%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS   D  LG GG   G I E++G   +GK+ L  HT+A + +         G C 
Sbjct: 143 CLTTGSKNFDTLLG-GGVETGSITELFGEFRTGKSQLC-HTLAVTCQLPLDIGGGEGKCL 200

Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDI 148
           ++D E     +     A++ G+D    L N+  ++    +  + + D    ++      +
Sbjct: 201 YIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQIRLLDAAAQMMSESRFSL 260

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IV+DSV AL  R +  G    S   M      +AL++L      +  +   +        
Sbjct: 261 IVVDSVMALY-RTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGNM 319

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRR 235
                P+   GGN +   S+ RL  R+
Sbjct: 320 SFNPDPKKPIGGNIMAHSSTTRLAFRK 346


>gi|222615516|gb|EEE51648.1| hypothetical protein OsJ_32955 [Oryza sativa Japonica Group]
          Length = 391

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 26/208 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  LD  LG GG     I E +G   SGKT LA HT+  S +         G  A+
Sbjct: 108 ITTGSQALDELLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSTQLPIHMHGGNGKVAY 165

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149
           +D E           A + G+D    L N++ ++  T E    +   L    A +   ++
Sbjct: 166 IDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLL 225

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DSV AL  R +  G  GE L   Q +L +Q L +LT         +   NQ+    G 
Sbjct: 226 IVDSVIALF-RVDFSGR-GE-LAERQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281

Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIRR 235
            +    P+   GG+ L   +++RL +R+
Sbjct: 282 GMFITDPKKPAGGHVLAHAATIRLMLRK 309


>gi|212546047|ref|XP_002153177.1| meiotic recombination protein (Dmc1), putative [Penicillium
           marneffei ATCC 18224]
 gi|111380644|gb|ABH09699.1| DMC1-like protein [Penicillium marneffei]
 gi|210064697|gb|EEA18792.1| meiotic recombination protein (Dmc1), putative [Penicillium
           marneffei ATCC 18224]
          Length = 337

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 100/222 (45%), Gaps = 34/222 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQKT----GGTCAF 100
           +S+GS   D  LG GGF    I E+YG    GKT L+ HT   IAQ  K      G  A+
Sbjct: 98  ISTGSKQFDTILG-GGFQSSSISEVYGEFRCGKTQLS-HTMSVIAQLPKEMGGGEGKVAY 155

Query: 101 VDAEHAL--DSI--YARKLGVDL----KNLLISQPDTGEQALEITDMLVRS---GAVDII 149
           +D E     D I   A + G+D     +N+  ++    E  LE+ + L +    G   ++
Sbjct: 156 IDTEGTFRPDRIAQIAERYGLDAESTQENISYARALNSEHQLELLNTLSKEFAGGQYRLL 215

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           VIDS+     R +  G  GE L   Q +L +Q L +L+         ++  NQ++   G 
Sbjct: 216 VIDSIMNCF-RVDFSG-RGE-LAERQQKL-NQFLIRLSHLAEEFNVCVLMTNQVQSDPGA 271

Query: 209 -VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241
             +F   +     GG+ L   S+ R+ +R      RV  I+D
Sbjct: 272 SALFAGADGRKPVGGHVLAHASTTRVLLRKGRGDERVAKIQD 313


>gi|298713772|emb|CBJ27144.1| DNA repair and recombination protein Rad51A [Ectocarpus
           siliculosus]
          Length = 343

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 93/209 (44%), Gaps = 26/209 (12%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  L  GG   G + E++G   +GKT L  HT+  + +         G   
Sbjct: 106 TLTTGSKELDKLLE-GGIETGSLTEVFGEFRTGKTQLC-HTLCVACQMPLDAGGGEGKAM 163

Query: 100 FVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---I 148
           ++D E        +  A + G++    L+N+  ++    EQ +++  M     A D   +
Sbjct: 164 YIDTEGTFRPQRLTAIAERFGLNGDDVLENVAYARAHNSEQQMDLLKMASAMMAEDRYAL 223

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI- 207
           +VIDS  AL  R +  G    S   MQ   ++Q LR+LT         +V  NQ+     
Sbjct: 224 LVIDSATALY-RTDYCGRGELSERQMQ---LAQFLRQLTRMAEEFGVAVVLTNQVVANPD 279

Query: 208 GVMFGSPETTT-GGNALKFYSSVRLDIRR 235
           G+ F    T   GGN +   S+ RL +R+
Sbjct: 280 GMSFAKDSTKPIGGNIIAHASTTRLRLRK 308


>gi|290559905|gb|EFD93227.1| Circadian clock protein KaiC central region [Candidatus
           Parvarchaeum acidophilus ARMAN-5]
          Length = 235

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 25/172 (14%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E IE  ++G  G D  L  GG+PK  ++ + G   +GKTT ++  +    K G  C +  
Sbjct: 6   EKIERETTGIPGFDEVLN-GGYPKKSVILVTGNPGAGKTTFSMQFLVDGAKKGEKCLYFT 64

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E ++D I  + L          +P   E    I + L++   + ++  DS+  +   +E
Sbjct: 65  LEESVDEIITQSLTF--------EPKINEY---IENGLIKLVTIPLVDYDSLKEVV-SSE 112

Query: 163 IEGDMG------ESLPGMQ---ARLMS--QALRKLTSSISRSKCILVFINQM 203
           ++  MG      +S+  +Q   + +MS  +A+ +L++ I    C  +FI +M
Sbjct: 113 LDA-MGAQRIVIDSVTYLQMFFSDIMSIRKAIIELSTIIKARDCTAIFIGEM 163


>gi|242398101|ref|YP_002993525.1| DNA repair and recombination protein radB [Thermococcus sibiricus
           MM 739]
 gi|259551847|sp|C6A0N1|RADB_THESM RecName: Full=DNA repair and recombination protein radB
 gi|242264494|gb|ACS89176.1| DNA repair and recombination protein radB [Thermococcus sibiricus
           MM 739]
          Length = 228

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 15/154 (9%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           ++++GS  LD  LG GG  KG + ++YGP ++GKTTLA+     ++   G  A++D E  
Sbjct: 1   MLTTGSKNLDALLG-GGIDKGILTQVYGPFATGKTTLAMQIGLLNE---GKVAYIDTEGG 56

Query: 107 LDSIYARKL----GVD----LKNLLISQP-DTGEQALEITDM-LVRSGAVDIIVIDSVAA 156
                  K+    G+D    L+  LI +  D  EQ   I+++  + +    +IV+DS+  
Sbjct: 57  FSPERLAKMVESRGMDSNSTLQKFLIFEAFDFKEQKKTISNLKKIVNEKFSMIVVDSITN 116

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
                E +  M   L G Q +++    RK   ++
Sbjct: 117 HYRVEEKKSSMTTDL-GKQLQVLLWLARKYNLAV 149


>gi|225444585|ref|XP_002273803.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297738498|emb|CBI27743.3| unnamed protein product [Vitis vinifera]
          Length = 337

 Score = 44.3 bits (103), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 93/221 (42%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           ++SGS  LD  L  GG   G I EIYG   SGKT L  HT+  + +         G   +
Sbjct: 100 ITSGSRELDKILE-GGLETGSITEIYGEFRSGKTQLC-HTLCVTCQLPLDQGGGEGKAMY 157

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +DAE                      L+++ YAR    D ++ L+         LE   M
Sbjct: 158 IDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL---------LEAASM 208

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           +V +    ++++DS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 209 MVET-RFALMIVDSATALY-RTDFSG-RGE----LSARQMHLAKFLRSLQKLADEFGVAV 261

Query: 198 VFINQMRMKI--GVMFGSPE-TTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++    +F  P+    GGN +   S+ RL +R+
Sbjct: 262 VITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRK 302


>gi|269966537|ref|ZP_06180620.1| hypothetical protein VMC_20500 [Vibrio alginolyticus 40B]
 gi|269828881|gb|EEZ83132.1| hypothetical protein VMC_20500 [Vibrio alginolyticus 40B]
          Length = 264

 Score = 44.3 bits (103), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 15/151 (9%)

Query: 14  KALEAALSQIQRVYGKGAIMQ-----LGSQGSIFEGIEV--------VSSGSLGLDIALG 60
           K L  + ++I  +Y +  IMQ     L SQ  +++             SSG   LD  LG
Sbjct: 16  KILRLSPTEIYCIYIQVFIMQDIIQNLKSQHLVWQANLTKADPQQLQTSSGFSELDDLLG 75

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GGFP   +VE+    S G+  L L    ++ +T G  AF+     ++S++   +G+D+ 
Sbjct: 76  -GGFPPHGVVEMESIGSIGELRL-LAPYLKATQTNGVTAFIQPPALVNSLFLHYIGLDIN 133

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
            + +  P   + AL   +  ++SG    +++
Sbjct: 134 QVWVVTPTHPKDALWAAEQCLKSGVCSNVLL 164


>gi|294495558|ref|YP_003542051.1| circadian clock protein, KaiC [Methanohalophilus mahii DSM 5219]
 gi|292666557|gb|ADE36406.1| putative circadian clock protein, KaiC [Methanohalophilus mahii DSM
           5219]
          Length = 302

 Score = 44.3 bits (103), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 7/108 (6%)

Query: 3   YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
           Y KE+    K+  LE AL  +     KG        G++   I+ +S+G +GLD  L  G
Sbjct: 23  YEKELGA--KNLVLEKALLSLD----KGRFRSKMDAGNLQCSIKRISTGIVGLDDMLE-G 75

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           G P+G  V + GP  +GKTTL +  + +    G  C     E  L  +
Sbjct: 76  GIPEGFSVIVTGPPGTGKTTLCMQYLMEGVTKGEKCVLFSFEERLPQL 123


>gi|332171751|gb|AEE21005.1| hypothetical protein Glaag_0036 [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 229

 Score = 44.3 bits (103), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 2/103 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT-IAQSQKTGGTCAFVDAE 104
           + +SSG   LD  L  GG P+  +V+I  P   G+  L L + + + Q +     F+ A 
Sbjct: 25  KTLSSGFDSLDAYLE-GGLPEQGVVDISSPIGIGELRLLLPSFVLRQQNSQKLLVFIGAP 83

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
             L++    K+G +L  +LI +P   ++AL  T+  ++SG  D
Sbjct: 84  ARLNAPMLVKMGFELSRILIIEPKNAKEALWSTEQCLKSGCCD 126


>gi|282165221|ref|YP_003357606.1| hypothetical protein MCP_2551 [Methanocella paludicola SANAE]
 gi|282157535|dbj|BAI62623.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 464

 Score = 44.3 bits (103), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
           G+  V++   G D  LG GG PKG  V + GP  SGKT +AL       + GG   FV  
Sbjct: 2   GLATVNTDIAGFDALLG-GGIPKGSTVLVSGPPGSGKTVMALQYTFNQARKGGRVLFVST 60

Query: 104 EHALDSI 110
              L SI
Sbjct: 61  CELLYSI 67


>gi|294656166|ref|XP_458414.2| DEHA2C16698p [Debaryomyces hansenii CBS767]
 gi|199430910|emb|CAG86496.2| DEHA2C16698p [Debaryomyces hansenii]
          Length = 350

 Score = 44.3 bits (103), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 52/244 (21%), Positives = 103/244 (42%), Gaps = 34/244 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  LG GG   G I E++G   +GK+ L  HT+A + +         G C 
Sbjct: 106 CITTGSKQLDTLLG-GGIETGSITEVFGEFRTGKSQLC-HTLAVTCQLPIDMGGGEGKCL 163

Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDI 148
           ++D E     +     A++ G++    L N+  ++    E   ++ +    ++       
Sbjct: 164 YIDTEGTFRPVRLVSIAQRYGLNPEDCLDNVAYARAYNAEHQFQLLNHAAQMMSESRFSC 223

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI- 207
           +++DS+ +L  R +  G     L   Q  + ++ +R L          +V  NQ+  ++ 
Sbjct: 224 LIVDSIMSLY-RTDYSGRA--ELSARQTHV-AKYMRTLQRLADEFGIAVVITNQVVAQVD 279

Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               MF   P+   GGN +   S+ RL  +      R+  I D   +  ++    + ++ 
Sbjct: 280 GASAMFNPDPKKPIGGNIIAHSSTTRLSFKKGRAEQRICKIYDSPCLPESECVFAIYEDG 339

Query: 259 MASP 262
           +  P
Sbjct: 340 IGDP 343


>gi|219850935|ref|YP_002465367.1| DNA repair and recombination protein RadB [Methanosphaerula
           palustris E1-9c]
 gi|219545194|gb|ACL15644.1| DNA repair and recombination protein RadB [Methanosphaerula
           palustris E1-9c]
          Length = 224

 Score = 44.3 bits (103), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 101/226 (44%), Gaps = 44/226 (19%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           ++SG+  LD  LG GG+    I + +G  + GK+TL         ++G    ++D E   
Sbjct: 5   LNSGNSDLDRLLG-GGYEPRIITQYFGEPAGGKSTLCQIAAVSCLRSGKAVVYIDTE-GF 62

Query: 108 DSIYARKLGVD-----LKNLLISQP-DTGEQALEI--TDMLVRSGAVDIIVIDSVAALTP 159
            +   R++  D      +NL + +P D  EQ L I  T+ +++S    ++V+DS  AL  
Sbjct: 63  STERFRQIAGDETDALAENLFLFEPLDFEEQGLMIGNTEQVLKSKESGLVVMDSATALY- 121

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV---MFGSPET 216
           R ++E                 ALR LT  +    C+L    +  + + +   ++  P T
Sbjct: 122 RTDLERG-------------QDALRALTRQMV---CLLGLSRKYDLPVIITNQIYTDPGT 165

Query: 217 TT----GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
                 GGNAL+  S V + + +          T +Q R ++VK++
Sbjct: 166 NRVSGLGGNALEHISKVIVQVEK----------TDSQRRARLVKHR 201


>gi|119489209|ref|XP_001262856.1| meiotic recombination protein dmc1 [Neosartorya fischeri NRRL 181]
 gi|119411014|gb|EAW20959.1| meiotic recombination protein dmc1 [Neosartorya fischeri NRRL 181]
          Length = 357

 Score = 44.3 bits (103), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 102/231 (44%), Gaps = 34/231 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQK----TGGTCAF 100
           +S+GS   D  LG GGF    I E++G    GKT L+ HT   +AQ  K      G  A+
Sbjct: 125 ISTGSKQFDSILG-GGFQSMSISEVFGEFRCGKTQLS-HTMSVVAQLPKEMGGADGKVAY 182

Query: 101 VDAEHALD----SIYARKLGVDL----KNLLISQPDTGEQALEITDMLVRS---GAVDII 149
           +D E        +  A + GVD     +N+  ++    E  LE+ + L R    G   ++
Sbjct: 183 IDTEGTFRPERIAQIAERFGVDPDSAQENIAYARALNSEHQLELLNTLSREFAGGEYRLL 242

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           +IDS+     R +  G  GE L   Q +L +Q L +L          ++  NQ++   G 
Sbjct: 243 IIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMRLAHMAEEFNVCVLMTNQVQSDPGA 298

Query: 209 -VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQT 250
             +F   +     GG+ L   S+ R+ +R      RV  I+D   ++ + T
Sbjct: 299 SALFAGADGRKPVGGHVLAHASTTRVLLRKGRGEERVAKIQDSPGLSPSDT 349


>gi|310795475|gb|EFQ30936.1| hypothetical protein GLRG_06080 [Glomerella graminicola M1.001]
          Length = 427

 Score = 44.3 bits (103), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 84/189 (44%), Gaps = 56/189 (29%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG  +G++ EI+GP  SGKT L +  +A +   G    +VD  +   S+  ++L   ++ 
Sbjct: 68  GGLQRGQVSEIWGPPGSGKTALGIQLVASALCDGHGAVWVDCAY---SVCGQRLNAVIEA 124

Query: 122 LLISQPDTGEQALEITD------------------------MLVRSGAVD------IIVI 151
           +        EQA   TD                        +L R  A        +++I
Sbjct: 125 V--------EQARSPTDDGPAKPSSDNLAHYSCPSLPHLVALLCRPTAATLPAKTALVII 176

Query: 152 DSVAALT----PRAEIEGDMGESL---PGMQARLMSQALRKLTSSISR----SKCILVFI 200
           DS++AL     P+A  +G  G      PG+ A+ + QAL+ +TS++ +      C +V +
Sbjct: 177 DSLSALVNYAFPKAS-DGRKGPPQGKGPGLSAKRL-QALQYITSALQKLAATRDCAVVVL 234

Query: 201 NQM--RMKI 207
           +Q   RM++
Sbjct: 235 SQCATRMQL 243


>gi|199598517|ref|ZP_03211934.1| DNA repair protein RadA [Lactobacillus rhamnosus HN001]
 gi|258540524|ref|YP_003175023.1| DNA repair protein RadA [Lactobacillus rhamnosus Lc 705]
 gi|199590559|gb|EDY98648.1| DNA repair protein RadA [Lactobacillus rhamnosus HN001]
 gi|257152200|emb|CAR91172.1| DNA repair protein RadA [Lactobacillus rhamnosus Lc 705]
          Length = 454

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 25/172 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V +G   L+  LG GG   G +V I G    GK+TL L    Q   TGGT  +V  E + 
Sbjct: 70  VKTGLAELNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSGQLASTGGTVLYVSGEESA 128

Query: 108 DSIYAR--KLGVDLKNLLISQPDTGEQALE-ITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
             I  R  +LGV    + +  P+T   ++E + D +      D +VIDSV  +       
Sbjct: 129 SQIKMRAGRLGVANSGMYL-YPETDMPSIENVIDQM----QPDYVVIDSVQTM------- 176

Query: 165 GDMGESLPGMQARLMSQA-LRKLTSS---ISRSKCILVFINQMRMKIGVMFG 212
                ++P M + + S A +R++T+    I++SK + +FI     K G + G
Sbjct: 177 -----NVPDMNSAVGSVAQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAG 223


>gi|258509335|ref|YP_003172086.1| DNA repair protein RadA [Lactobacillus rhamnosus GG]
 gi|257149262|emb|CAR88235.1| DNA repair protein RadA [Lactobacillus rhamnosus GG]
 gi|259650616|dbj|BAI42778.1| DNA repair protein RadA [Lactobacillus rhamnosus GG]
          Length = 454

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 25/172 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V +G   L+  LG GG   G +V I G    GK+TL L    Q   TGGT  +V  E + 
Sbjct: 70  VKTGLAELNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSGQLASTGGTVLYVSGEESA 128

Query: 108 DSIYAR--KLGVDLKNLLISQPDTGEQALE-ITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
             I  R  +LGV    + +  P+T   ++E + D +      D +VIDSV  +       
Sbjct: 129 SQIKMRAGRLGVANSGMYL-YPETDMPSIENVIDQM----QPDYVVIDSVQTM------- 176

Query: 165 GDMGESLPGMQARLMSQA-LRKLTSS---ISRSKCILVFINQMRMKIGVMFG 212
                ++P M + + S A +R++T+    I++SK + +FI     K G + G
Sbjct: 177 -----NVPDMNSAVGSVAQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAG 223


>gi|118575453|ref|YP_875196.1| RecA/RadA recombinase [Cenarchaeum symbiosum A]
 gi|145559520|sp|O93748|RADA_CENSY RecName: Full=DNA repair and recombination protein radA
 gi|118193974|gb|ABK76892.1| RecA/RadA recombinase [Cenarchaeum symbiosum A]
          Length = 398

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 97/238 (40%), Gaps = 26/238 (10%)

Query: 24  QRVYGKGAIMQLGSQGS-IF---EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           +R+   GAI +  + GS I+   + I ++++G+  LD  LG GG     I E++G   SG
Sbjct: 61  KRLAETGAITKDFASGSEIYKRRQSIGMITTGTDALDALLG-GGIETQAITEVFGEFGSG 119

Query: 80  KTTLALHTIAQSQKT------GGTCAFVDAEHALDS----IYARKLGVDLKNLL-----I 124
           KT         +QK       GG   ++D E           A+   +D   LL      
Sbjct: 120 KTQFCHTMCVTTQKPKEEGGLGGGVMYIDTEGTFRPERVVTIAKANNMDPAKLLDGIIVA 179

Query: 125 SQPDTGEQAL--EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
              ++  Q L  E     ++   + +I+ DS   L  R+E    +G      + + + + 
Sbjct: 180 RAYNSSHQVLILEEAGKTIQEENIKLIISDSTTGLF-RSEY---LGRGTLASRQQKLGRY 235

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           +R L        C ++  NQ+       FG P    GGN +   S+ R+  R+ G  K
Sbjct: 236 IRLLARIAETYNCAVLATNQVSSSPDSFFGDPTRPVGGNVVGHASTYRIYFRKGGKNK 293


>gi|119177699|ref|XP_001240596.1| hypothetical protein CIMG_07759 [Coccidioides immitis RS]
          Length = 339

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 104/237 (43%), Gaps = 36/237 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IA 89
           M+LG Q    + +  +S+GS   D  L   GF    I E+YG    GKT L+ HT   +A
Sbjct: 87  MELGHQR---KRVVRISTGSKQFDAILNGSGFQSMSISEVYGEFRCGKTQLS-HTMSVVA 142

Query: 90  QSQKT----GGTCAFVDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEIT 137
           Q  ++     G  A++D E           A + GVD    L+N+  ++    E  LE+ 
Sbjct: 143 QLPRSMGGAEGKVAYIDTEGTFRPERVGQIAERFGVDPDSSLENIAYARALNSEHQLELL 202

Query: 138 DMLVRS---GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           + L +    G   +++IDS+     R +  G  GE L   Q +L +Q L KL        
Sbjct: 203 NTLSKEFAGGEYRLLIIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFN 258

Query: 195 CILVFINQMRMKIG--VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241
             ++  NQ++   G   +F   +     GG+ L   S+ R+ +R      RV  I+D
Sbjct: 259 VCVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTRVFLRKGRGEERVAKIQD 315


>gi|149919632|ref|ZP_01908111.1| hypothetical protein PPSIR1_07163 [Plesiocystis pacifica SIR-1]
 gi|149819575|gb|EDM79003.1| hypothetical protein PPSIR1_07163 [Plesiocystis pacifica SIR-1]
          Length = 369

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 29/56 (51%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
            L  D    +GG PKG  + + GP   GKT   L T+A+  +TG  CAFV AE   
Sbjct: 117 CLSEDSKTSLGGLPKGCTMALVGPPGKGKTRTTLGTLARVAQTGIKCAFVVAEEGF 172


>gi|50290117|ref|XP_447490.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526800|emb|CAG60427.1| unnamed protein product [Candida glabrata]
          Length = 383

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 23/208 (11%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  LG GG   G I E++G   +GK+ L  H++A + +         G C 
Sbjct: 142 CLTTGSKNLDTLLG-GGIETGSITELFGEFRTGKSQLC-HSLAVTCQIPLDLGGGEGKCL 199

Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDI 148
           ++D E     +     A++ G+D    L N+  ++    +  + + D    ++      +
Sbjct: 200 YIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQMRLLDAAAQMMSESRFSL 259

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IV+DSV AL  R +  G    S   M      +AL++L      +  ++      ++  G
Sbjct: 260 IVVDSVMALY-RTDFSGRGELSARQMHLAKFMRALQRLADQFGVAV-VVTNQVVAQVDGG 317

Query: 209 VMFGS-PETTTGGNALKFYSSVRLDIRR 235
           + F   P+   GGN +   S+ RL  ++
Sbjct: 318 MSFNPDPKKPIGGNIMAHSSTTRLGFKK 345


>gi|57641845|ref|YP_184323.1| ATPase [Thermococcus kodakarensis KOD1]
 gi|57160169|dbj|BAD86099.1| ATPase, RecA superfamily [Thermococcus kodakarensis KOD1]
          Length = 237

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
           G + + ++ + SG  GLD  +G GGF  GR+  + GP  SGKTTL +  +A+  K     
Sbjct: 4   GELLKNLDRIPSGVPGLDELIG-GGFLPGRVYVVTGPPGSGKTTLGMQFLAEGAKNDEKG 62

Query: 99  AFV 101
            F+
Sbjct: 63  LFI 65


>gi|121709155|ref|XP_001272325.1| meiotic recombination protein dmc1 [Aspergillus clavatus NRRL 1]
 gi|119400474|gb|EAW10899.1| meiotic recombination protein dmc1 [Aspergillus clavatus NRRL 1]
          Length = 337

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 98/222 (44%), Gaps = 34/222 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQK----TGGTCAF 100
           +S+GS   D  LG GGF    I E++G    GKT L+ HT   +AQ  K      G  A+
Sbjct: 98  ISTGSKQFDSILG-GGFQSMSISEVFGEFRCGKTQLS-HTMSVVAQLPKEMGGADGKVAY 155

Query: 101 VDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDMLVRS---GAVDII 149
           +D E        +  A + GVD     +N+  ++    E  LE+ + L R    G   ++
Sbjct: 156 IDTEGTFRPERIAQIAERFGVDSDSAQENIAYARALNSEHQLELLNTLSREFAGGEYRLL 215

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           +IDS+     R +  G  GE L   Q +L +Q L KL          ++  NQ++   G 
Sbjct: 216 IIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFNICVLMTNQVQSDPGA 271

Query: 209 -VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241
             +F   +     GG+ L   S+ R+ +R      RV  I+D
Sbjct: 272 SALFAGADGRKPVGGHVLAHASTTRVLLRKGRGEERVAKIQD 313


>gi|156937796|ref|YP_001435592.1| DNA repair and recombination protein RadA [Ignicoccus hospitalis
           KIN4/I]
 gi|166218760|sp|A8AB83|RADA_IGNH4 RecName: Full=DNA repair and recombination protein radA
 gi|156566780|gb|ABU82185.1| DNA repair and recombination protein RadA [Ignicoccus hospitalis
           KIN4/I]
          Length = 327

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 27/210 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGG-------- 96
           +++GS  LD  LG GG     I E +G   SGK+ L        Q   + GG        
Sbjct: 88  ITTGSKNLDDLLG-GGIETKTITEFFGEFGSGKSQLCHQASVNVQLPLEQGGLSEGDKVA 146

Query: 97  TCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGA 145
              +VD E           A+ LG+D    + N+   +    +  + I +    LV    
Sbjct: 147 KAVYVDTEGTFRWERIEQMAKCLGLDPDQVMDNIYYIRAVNSDHQMAIVEELFNLVPKEN 206

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           V +IV+DSV +   RAE  G   E+L   Q +L ++ L +L          ++  NQ+  
Sbjct: 207 VKLIVVDSVTSHF-RAEYPGR--ENLAVRQQKL-NKHLHQLGKLAEVYNTAVIITNQVMA 262

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           +  V +G P    GG+ L     VR+ +++
Sbjct: 263 RPDVFYGDPTQAVGGHVLYHAPGVRVQLKK 292


>gi|261194837|ref|XP_002623823.1| DNA repair protein RAD51 [Ajellomyces dermatitidis SLH14081]
 gi|239588361|gb|EEQ71004.1| DNA repair protein RAD51 [Ajellomyces dermatitidis SLH14081]
 gi|239613363|gb|EEQ90350.1| DNA repair protein RAD51 [Ajellomyces dermatitidis ER-3]
 gi|327351860|gb|EGE80717.1| DNA repair protein RAD51 [Ajellomyces dermatitidis ATCC 18188]
          Length = 348

 Score = 43.9 bits (102), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 96/212 (45%), Gaps = 29/212 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  L  GG   G I EI+G   +GK+ +  HT+A + +         G C 
Sbjct: 102 CITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCL 159

Query: 100 FVDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDI 148
           ++D E     +     A++ G+     L N+  ++    +  L++ +    ++      +
Sbjct: 160 YIDTEGTFRPVRLLAVAQRYGLVGEEVLDNIAYARAYNSDHQLQLLNQASQMMCETRFSL 219

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI- 207
           +++DS  AL  R +  G  GE L   Q  L ++ +RKL +        +V  NQ+  ++ 
Sbjct: 220 LIVDSATALY-RTDFSG-RGE-LANRQNHL-AKFMRKLRTLADEFGIAVVITNQVVAQVD 275

Query: 208 ---GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
                MF   P+   GGN +   S+ RL +R+
Sbjct: 276 GGPSAMFNPDPKKPIGGNIIAHASTTRLSLRK 307


>gi|169623440|ref|XP_001805127.1| hypothetical protein SNOG_14961 [Phaeosphaeria nodorum SN15]
 gi|160704983|gb|EAT77504.2| hypothetical protein SNOG_14961 [Phaeosphaeria nodorum SN15]
          Length = 1641

 Score = 43.9 bits (102), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 103/244 (42%), Gaps = 35/244 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G I EI+G   +GK+ +  HT+A + +         G C +
Sbjct: 110 ITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 167

Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDII 149
           +D E     +     A + G+     L N+  ++    +  LE+ +    ++      ++
Sbjct: 168 IDTEGTFRPVRCLAVANRFGLSGEEVLDNVAYARAYNSDHQLELLNQAAQMMTETRFSLL 227

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           ++DS  +L  R +  G  GE L   Q  L ++ +R L          +V  NQ+  ++  
Sbjct: 228 IVDSATSLY-RTDFAG-RGE-LSSRQTHL-AKFMRTLQRLADEFGIAVVITNQVVAQVDG 283

Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               MF   P+   GGN +   S+ RL +R      RV  I D   +  +     + ++ 
Sbjct: 284 GPSAMFNPDPKKPIGGNIIAHASTTRLSLRKGRGETRVCKIYDSPCLPESDCLFAINEDG 343

Query: 259 MASP 262
           +  P
Sbjct: 344 IGDP 347


>gi|197092367|gb|ACH42256.1| disrupted meiotic cDNA 1 protein [Triticum aestivum]
 gi|222154115|gb|ACM47237.1| disrupted meiotic cDNA 1 protein [Triticum aestivum]
          Length = 344

 Score = 43.9 bits (102), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 26/208 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  LD  LG GG     I E +G   SGKT LA HT+  S +         G  A+
Sbjct: 108 ITTGSQTLDELLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSTQLPLHMHGGNGKVAY 165

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149
           +D E           A + G+D    L N++ ++  T E    +   L    A +   ++
Sbjct: 166 IDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLL 225

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DSV AL  R +  G  GE L   Q +L +Q L +LT         +   NQ+    G 
Sbjct: 226 IVDSVIALF-RVDFSGR-GE-LAERQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281

Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIRR 235
            +    P+   GG+ L   +++RL +R+
Sbjct: 282 GMFITDPKKPAGGHVLAHAATIRLMLRK 309


>gi|254230315|ref|ZP_04923703.1| hypothetical protein VEx25_B0297 [Vibrio sp. Ex25]
 gi|151937175|gb|EDN56045.1| hypothetical protein VEx25_B0297 [Vibrio sp. Ex25]
          Length = 264

 Score = 43.9 bits (102), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 2/103 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSG   LD  LG GGFP   +VE+    S G+  L L    ++ +T G  AF+     ++
Sbjct: 64  SSGFSELDDLLG-GGFPPHGVVEMESIGSIGELRL-LAPYLKATQTNGVTAFIQPPALVN 121

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           S++   +G+D+  + +  P   + AL   +  ++SG    +++
Sbjct: 122 SLFLHYIGLDINQVWVVNPAHPKDALWAAEQCLKSGVCSNVLL 164


>gi|67541116|ref|XP_664332.1| hypothetical protein AN6728.2 [Aspergillus nidulans FGSC A4]
 gi|40739356|gb|EAA58546.1| hypothetical protein AN6728.2 [Aspergillus nidulans FGSC A4]
 gi|259480319|tpe|CBF71341.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
          Length = 366

 Score = 43.9 bits (102), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 3/74 (4%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G P+G++ E++GP   GKT+LAL+  + +   GG   ++D    L  +  R   V  K++
Sbjct: 63  GIPQGQVTEVFGPPGVGKTSLALNVASNALLAGGKVVWIDTGSPLPRLRLRD--VLQKSI 120

Query: 123 LISQ-PDTGEQALE 135
            +S+ P T EQ ++
Sbjct: 121 EVSKSPQTAEQLVQ 134


>gi|319405475|emb|CBI79094.1| DNA repair protein [Bartonella sp. AR 15-3]
          Length = 477

 Score = 43.9 bits (102), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 10/157 (6%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG I+ L S     E I  + SG   LD   G GGF +G  + I G    GK+TL   T 
Sbjct: 52  KGHIVTLTSLSGDIENIPRIHSGIAELDRVTG-GGFVRGSALLIAGDPGIGKSTLLTQTA 110

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A   +      +V  E A+  I  R   ++  N  + Q        +I   L     +D+
Sbjct: 111 AALSQKKYNVIYVSGEEAITQIRLRAQRLNATNTAV-QLAAETNVEDILATLNTHKKLDM 169

Query: 149 IVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQAL 183
           +++DS+  L        ++ +S PG   Q R+ +QA+
Sbjct: 170 VIVDSIQTLW------SNLADSAPGTVTQVRISAQAM 200


>gi|194746120|ref|XP_001955532.1| GF16205 [Drosophila ananassae]
 gi|190628569|gb|EDV44093.1| GF16205 [Drosophila ananassae]
          Length = 334

 Score = 43.9 bits (102), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 95/210 (45%), Gaps = 28/210 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GTCAF 100
           +++GS  LD  LG GG   G I EI+G    GKT +  HT+A       SQK G G C +
Sbjct: 95  LTTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQIC-HTLAVTCQLPISQKGGEGKCLY 152

Query: 101 VDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDII 149
           +D E+       S  A++  ++    L N+  S+    +Q  ++  M   ++      ++
Sbjct: 153 IDTENTFRPERLSAIAQRYKLNEAEVLDNVACSRAYNSDQQTKLIQMAAGMLFESRYAVV 212

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           ++DS  AL  R++  G  GE L   Q  L    LR L          +V  NQ+   +  
Sbjct: 213 IVDSAMALY-RSDYIGR-GE-LAARQNHL-GLFLRMLQRLADEFGVAVVITNQVTASVDA 268

Query: 208 --GVMFGSPETTTGGNALKFYSSVRLDIRR 235
             G+  G  +   GG+ +   S+ RL +R+
Sbjct: 269 GPGMFAGDSKKPIGGHIMAHASTTRLYLRK 298


>gi|71018413|ref|XP_759437.1| DNA repair protein RAD51 [Ustilago maydis 521]
 gi|2500102|sp|Q99133|RAD51_USTMA RecName: Full=DNA repair protein RAD51
 gi|1480734|gb|AAC61878.1| Rad51 [Ustilago maydis]
 gi|46099044|gb|EAK84277.1| RA51_USTMA DNA repair protein RAD51 [Ustilago maydis 521]
          Length = 339

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 92/211 (43%), Gaps = 31/211 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  LG GG   G I E+YG   +GK+ L  HT+A + +         G C +
Sbjct: 102 ITTGSKNLDAILG-GGMETGSITELYGEFRTGKSQLC-HTLAVTCQLPVDMGGGEGKCLY 159

Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E+          A + G++    L N+  ++    +  L++      ++      ++
Sbjct: 160 IDTENTFRPTRLLAVAERFGLNGEEVLDNVAYARAYNADHQLQLLMQASAMMAESRFSLL 219

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMKI 207
           ++DS+ +L  R +  G  GE    + AR M  A  LR L          +V  NQ+  ++
Sbjct: 220 IVDSLTSLY-RTDFSG-RGE----LSARQMHLAKFLRGLMRLADEFGVAVVITNQVVAQV 273

Query: 208 ---GVMFGSPETTTGGNALKFYSSVRLDIRR 235
                     +   GGN +   S+ RL +R+
Sbjct: 274 DGATAFTADAKKPIGGNIVAHASTTRLSLRK 304


>gi|4322494|gb|AAD16063.1| recombination/repair protein RadA [Cenarchaeum symbiosum]
          Length = 369

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 97/238 (40%), Gaps = 26/238 (10%)

Query: 24  QRVYGKGAIMQLGSQGS-IF---EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           +R+   GAI +  + GS I+   + I ++++G+  LD  LG GG     I E++G   SG
Sbjct: 32  KRLAETGAITKDFASGSEIYKRRQSIGMITTGTDALDALLG-GGIETQAITEVFGEFGSG 90

Query: 80  KTTLALHTIAQSQKT------GGTCAFVDAEHALDS----IYARKLGVDLKNLL-----I 124
           KT         +QK       GG   ++D E           A+   +D   LL      
Sbjct: 91  KTQFCHTMCVTTQKPKEEGGLGGGVMYIDTEGTFRPERVVTIAKANNMDPAKLLDGIIVA 150

Query: 125 SQPDTGEQAL--EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
              ++  Q L  E     ++   + +I+ DS   L  R+E    +G      + + + + 
Sbjct: 151 RAYNSSHQVLILEEAGKTIQEENIKLIISDSTTGLF-RSEY---LGRGTLASRQQKLGRY 206

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           +R L        C ++  NQ+       FG P    GGN +   S+ R+  R+ G  K
Sbjct: 207 IRLLARIAETYNCAVLATNQVSSSPDSFFGDPTRPVGGNVVGHASTYRIYFRKGGKNK 264


>gi|330919603|ref|XP_003298683.1| hypothetical protein PTT_09464 [Pyrenophora teres f. teres 0-1]
 gi|311328005|gb|EFQ93221.1| hypothetical protein PTT_09464 [Pyrenophora teres f. teres 0-1]
          Length = 348

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 103/244 (42%), Gaps = 35/244 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G I EI+G   +GK+ L  HT+A + +         G C +
Sbjct: 100 ITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQLC-HTLAVTCQLPFDMGGGEGKCIY 157

Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDII 149
           +D E     +     A + G+     L N+  ++    +  LE+ +    ++      ++
Sbjct: 158 IDTEGTFRPVRCLAVANRFGLSGEEVLDNVAYARAYNSDHQLELLNQAAQMMTETRFSLL 217

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           V+DS  AL  R +  G  GE L   Q  L ++ +R L          ++  NQ+  ++  
Sbjct: 218 VVDSAMALY-RTDFVG-RGE-LSARQTHL-AKFMRTLQRLADEFGIAVIITNQVVAQVDG 273

Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               MF   P+   GGN +   S+ RL +R      RV  I D   +  +     + ++ 
Sbjct: 274 GPSAMFNPDPKKPIGGNIIAHASTTRLSLRKGRGETRVCKIYDSPCLPESDCLFAINEDG 333

Query: 259 MASP 262
           +  P
Sbjct: 334 IGDP 337


>gi|118355624|ref|XP_001011071.1| DNA repair protein RAD51 containing protein [Tetrahymena
           thermophila]
 gi|3237383|gb|AAC39117.1| Rad51 [Tetrahymena thermophila]
 gi|89292838|gb|EAR90826.1| DNA repair protein RAD51 containing protein [Tetrahymena
           thermophila SB210]
          Length = 331

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 99/212 (46%), Gaps = 33/212 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT----TLALHTIAQSQKTG--GTCAFV 101
           +++GS  LD  LG GGF  G + EI+G   +GKT    TL +      +K G  G   ++
Sbjct: 94  LTTGSTELDKLLG-GGFETGSLTEIFGEFRTGKTQICHTLCITCQLPKEKGGGEGKAMYI 152

Query: 102 DAE-----HALDSIYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------ 146
           D E       L+SI A + G+D    ++N+  ++    +Q      +LV++ A+      
Sbjct: 153 DTEGTFRPERLESI-AERFGLDPQECMENVAYARAFNCDQQ---NKLLVQAAALMAESKY 208

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++++DS  AL  R +  G  GE    ++   + + LR L          +V  NQ+  +
Sbjct: 209 ALLIVDSATALY-RTDYSG-RGEL--SVRQNHLGKFLRNLQRLADEFGIAVVITNQVMSQ 264

Query: 207 I--GVMF-GSPETTTGGNALKFYSSVRLDIRR 235
           +    MF G  +   GGN +   S+ RL +R+
Sbjct: 265 VDGAAMFAGDMKKPIGGNIMAHASTTRLYLRK 296


>gi|262393789|ref|YP_003285643.1| RecA/RadA recombinase [Vibrio sp. Ex25]
 gi|262337383|gb|ACY51178.1| RecA/RadA recombinase [Vibrio sp. Ex25]
          Length = 230

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 2/103 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSG   LD  LG GGFP   +VE+    S G+  L L    ++ +T G  AF+     ++
Sbjct: 30  SSGFSELDDLLG-GGFPPHGVVEMESIGSIGELRL-LAPYLKATQTNGVTAFIQPPALVN 87

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           S++   +G+D+  + +  P   + AL   +  ++SG    +++
Sbjct: 88  SLFLHYIGLDINQVWVVNPAHPKDALWAAEQCLKSGVCSNVLL 130


>gi|57641867|ref|YP_184345.1| ATPase [Thermococcus kodakarensis KOD1]
 gi|57160191|dbj|BAD86121.1| ATPase, RecA superfamily [Thermococcus kodakarensis KOD1]
          Length = 448

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 7/98 (7%)

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLL 123
           +G I  I GP  SGKT LAL+  +   K+G    ++  E +L ++     KLG++    +
Sbjct: 255 EGSITLIAGPTGSGKTILALNLASNLSKSGKKVLYIAYEESLAALRDTLEKLGLEENFRI 314

Query: 124 ISQPDTGEQALE----ITDMLVRSGAVDIIVIDSVAAL 157
           +S    G   +E    I D++ + G  D++VIDS++A+
Sbjct: 315 VSMVPEGRTPVEYYALIKDLIEKEG-FDVLVIDSLSAM 351



 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 18/128 (14%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E++ +G   LD AL  GGF +G  + + G   SGKT LA+H +  + + G    +V   
Sbjct: 1   MELIPTGIPSLDKALN-GGFSRGSTILLAGNPGSGKTHLAIHVLYNNMRRGLKGVYVSFA 59

Query: 105 HALDSIYARKL--GVDLKNL----------LISQPD---TGEQALEITDMLVRSGAVDII 149
                 Y   L  G+DL  +          +++ P     G  A  I D++      DII
Sbjct: 60  ETKKQFYRNALQSGIDLSKMEGVNLFRFYDMLTVPKDELEGMIAFLIDDIV--EFKPDII 117

Query: 150 VIDSVAAL 157
           V DSV   
Sbjct: 118 VFDSVTVF 125


>gi|198436503|ref|XP_002123810.1| PREDICTED: similar to Dmc1 homolog [Ciona intestinalis]
          Length = 282

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 25/157 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           VS+GS  LD  LG GG     I E++G   +GKT L+ HT++ + +        GG   +
Sbjct: 102 VSTGSEDLDKLLG-GGIESMAITEVFGEFRTGKTQLS-HTLSVTTQIPGAKGYMGGKVVY 159

Query: 101 VDAEHAL--DSI--YARKLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147
           +D E+    D +   A +  +D    L N++ ++  T E  +E+ D +       +G   
Sbjct: 160 IDTENTFRPDRLRPIADRFNLDQNAVLDNVMYARAYTSEHQMELLDHVAAKFHEEAGIFK 219

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           ++++DSV AL  R +  G  GE L   Q +L    LR
Sbjct: 220 LLIVDSVMALF-RVDFSG-RGE-LADRQQKLAQGELR 253


>gi|189210816|ref|XP_001941739.1| DNA repair protein RAD51 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|330918612|ref|XP_003298289.1| hypothetical protein PTT_08944 [Pyrenophora teres f. teres 0-1]
 gi|187977832|gb|EDU44458.1| DNA repair protein RAD51 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|311328605|gb|EFQ93618.1| hypothetical protein PTT_08944 [Pyrenophora teres f. teres 0-1]
          Length = 348

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 93/211 (44%), Gaps = 29/211 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G I EI+G   +GK+ +  HT+A + +         G C +
Sbjct: 100 ITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 157

Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDII 149
           +D E     +     A + G+     L N+  ++    +  LE+ +    ++      ++
Sbjct: 158 IDTEGTFRPVRCLAVANRYGLSGEEVLDNVAYARAYNSDHQLELLNQAAQMMTETRFSLL 217

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           V+DS  AL  R +  G  GE L   Q  L ++ +R L          ++  NQ+  ++  
Sbjct: 218 VVDSATALY-RTDFAG-RGE-LSARQTHL-AKFMRTLQRLADEFGIAVIITNQVVAQVDG 273

Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
               MF   P+   GGN +   S+ RL +R+
Sbjct: 274 GPSAMFNPDPKKPIGGNIIAHASTTRLSLRK 304


>gi|114228441|gb|ABI58231.1| Rad51 protein [Oryza sativa Indica Group]
          Length = 332

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 94/211 (44%), Gaps = 32/211 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           V++GS  LD  L  GG   G I EIYG   SGKT L  HT+  + +         G   +
Sbjct: 96  VTTGSRELDKILD-GGIETGSITEIYGEFRSGKTQLC-HTLCVTCQLPLDHGGGEGKALY 153

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQP-DTGEQA---LEITDMLVRSGAVDI 148
           +DAE           A + G++    L+N+  ++  +T  Q+   L    M+V +    I
Sbjct: 154 IDAEGTFRPQRFLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLGAASMMVET-RFAI 212

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMK 206
           +++DS  AL  R +  G  GE    + AR M  A  LR L          +V  NQ+  +
Sbjct: 213 MIVDSATALY-RTDFSG-RGE----LSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQ 266

Query: 207 I--GVMFGSPETTTGGNALKFYSSVRLDIRR 235
           +    MFG      GGN +   S+ RL +R+
Sbjct: 267 VDGAAMFGPQIKPIGGNIMAHASTTRLFLRK 297


>gi|126459324|ref|YP_001055602.1| hypothetical protein Pcal_0710 [Pyrobaculum calidifontis JCM 11548]
 gi|126249045|gb|ABO08136.1| conserved hypothetical protein [Pyrobaculum calidifontis JCM 11548]
          Length = 277

 Score = 43.5 bits (101), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 8/124 (6%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
           G+  VS G   LD AL  GG P+G  V + G    GK+ L +H      + G    +V  
Sbjct: 10  GVRRVSIGVEALDKALE-GGIPQGSWVVVTGEPGVGKSILCIHFAYAGLRAGDPVVYVTT 68

Query: 104 EHALDSIY--ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA-ALTPR 160
           E     +   AR+LG+DL    +      ++  E+ +++V    VDI  +  VA  LT R
Sbjct: 69  EQEFRDVMEQARQLGMDLSQFSVFNIAWRKEPEELPEIVV----VDIFGLLKVARQLTER 124

Query: 161 AEIE 164
           A  E
Sbjct: 125 AREE 128


>gi|91228568|ref|ZP_01262488.1| hypothetical protein V12G01_00794 [Vibrio alginolyticus 12G01]
 gi|91187892|gb|EAS74204.1| hypothetical protein V12G01_00794 [Vibrio alginolyticus 12G01]
          Length = 230

 Score = 43.5 bits (101), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 2/103 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSG   LD  LG GGFP   +VE+    S G+  L L    ++ +T G  AF+     ++
Sbjct: 30  SSGFSELDDLLG-GGFPPHGVVEMESIGSIGELRL-LAPYLKATQTNGMTAFIQPPALVN 87

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           S++   +G+D+  + +  P   + AL   +  ++SG    +++
Sbjct: 88  SLFLHYIGLDINQVWVVTPTHPKDALWAAEQCLKSGVCSNVLL 130


>gi|145499122|ref|XP_001435547.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124402680|emb|CAK68150.1| unnamed protein product [Paramecium tetraurelia]
          Length = 337

 Score = 43.5 bits (101), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 114/257 (44%), Gaps = 30/257 (11%)

Query: 3   YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIF---EGIEVVSSGSLGLDIAL 59
           Y  + N+++     +A + ++     K  + Q      +    E I  +S+GS   D  L
Sbjct: 52  YTAKKNLMNIKGMTDAKIEKLVEAVAKLVVNQFKPATDVLKQRERIVHISTGSTKFDKLL 111

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-------KTGGTCAFVDAE-----HAL 107
             GG   G I EI+G   +GK+ +  HT+A +        + GG C ++D E       L
Sbjct: 112 R-GGIETGGITEIFGEFRTGKSQIC-HTLAVTCQMNDGKGRPGGKCLYIDTEGTFRPERL 169

Query: 108 DSIYAR-KLGVD--LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRA 161
             I  R +LG++  L+N+  ++    ++ +++      L+ +    ++++DS  AL  R 
Sbjct: 170 SEIAKRFELGIEEVLENVSFARAYNVDEQMKLLIQACNLMSTDKYALLIVDSATALY-RT 228

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-GVM--FGSPETTT 218
           +  G  GE L   Q  L  + LR L          +V  NQ+  ++ G M   G  +   
Sbjct: 229 DYLG-RGE-LSARQNHL-GKFLRNLQRLADEFNVAVVITNQVMSQVEGTMMAMGDQKKPI 285

Query: 219 GGNALKFYSSVRLDIRR 235
           GGN +   S+ RL +R+
Sbjct: 286 GGNIMAHASTTRLYLRK 302


>gi|317155982|ref|XP_001825494.2| meiotic recombination protein DMC1 [Aspergillus oryzae RIB40]
          Length = 337

 Score = 43.5 bits (101), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 98/222 (44%), Gaps = 34/222 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQK----TGGTCAF 100
           +S+GS   D  LG GGF    I E++G    GKT L+ HT   +AQ  K      G  A+
Sbjct: 98  ISTGSKQFDAILG-GGFQSMSISEVFGEFRCGKTQLS-HTMSVVAQLPKEMGGADGKVAY 155

Query: 101 VDAEHALD----SIYARKLGVDL----KNLLISQPDTGEQALEITDMLVRS---GAVDII 149
           +D E        +  A + GVD     +N+  ++    E  LE+ + L +    G   ++
Sbjct: 156 IDTEGTFRPERIAQIAERFGVDADSARENIAYARALNSEHQLELLNTLSKEFTGGEYRLL 215

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           +IDS+     R +  G  GE L   Q +L +Q L KL          ++  NQ++   G 
Sbjct: 216 IIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFNVCVLMTNQVQSDPGA 271

Query: 209 -VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241
             +F   +     GG+ L   S+ R+ +R      RV  I+D
Sbjct: 272 SALFAGADGRKPVGGHVLAHASTTRVLLRKGRGDERVAKIQD 313


>gi|295691323|ref|YP_003595016.1| non-specific serine/threonine protein kinase [Caulobacter segnis
           ATCC 21756]
 gi|295433226|gb|ADG12398.1| Non-specific serine/threonine protein kinase [Caulobacter segnis
           ATCC 21756]
          Length = 518

 Score = 43.5 bits (101), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 15/124 (12%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E+VS+GS G+D  LG GG  +G    I GP   GKTT A+     + + G   A+   + 
Sbjct: 266 EMVSTGSPGIDALLG-GGLTRGTNTLISGPSGVGKTTTAVRCALTALQRGERVAYYLFDE 324

Query: 106 ALDSIYAR--KLGVDLK------NLLISQPD-----TGEQALEITDMLVRSGAVDIIVID 152
            L  + AR   LG+DL+       L+I   D      GE A  + + + R  A   +VID
Sbjct: 325 GLAILLARSASLGMDLRPHLDSGQLIIRSIDPAELSPGEFAFHVREAVERDRA-RTVVID 383

Query: 153 SVAA 156
           S+ A
Sbjct: 384 SLNA 387



 Score = 36.6 bits (83), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 11/102 (10%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV-----D 102
           VS+G  GLD  LG GG  + RI  + G   SGKTTLAL  + + ++ G +  ++     +
Sbjct: 28  VSTGVSGLDDILG-GGLTRDRIYLVEGTPGSGKTTLALQFLLKGRELGESGLYITLSETE 86

Query: 103 AE-HALDSIYARKL-GVDLKNLLISQ---PDTGEQALEITDM 139
           AE  A  + +   L G+DL  L+  +   PD+ +  L  +D+
Sbjct: 87  AELRAAAASHGWSLDGIDLFELVSEEGLDPDSEQSVLHPSDV 128


>gi|14521160|ref|NP_126635.1| recombinase related [Pyrococcus abyssi GE5]
 gi|5458378|emb|CAB49866.1| recA family AAA ATPase [Pyrococcus abyssi GE5]
          Length = 240

 Score = 43.5 bits (101), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +S+G  GLD  L  GG   GR+  I GP  SGKTT  +H + +  + G   A+V   H
Sbjct: 6   ERISTGVKGLD-ELIEGGLIPGRVYLITGPPGSGKTTFGMHFLLEGARKGEKVAYVSLIH 64

Query: 106 ALDSIYARKLGVD 118
             + +    L  D
Sbjct: 65  KPEEVVKDMLRFD 77


>gi|126466020|ref|YP_001041129.1| circadian clock protein, KaiC [Staphylothermus marinus F1]
 gi|126014843|gb|ABN70221.1| putative circadian clock protein, KaiC [Staphylothermus marinus F1]
          Length = 280

 Score = 43.1 bits (100), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE + +G  GLD  L  GG P+G +V + G   +GKT   +H I +  + G    +V  E
Sbjct: 6   IERIPTGVKGLDEILR-GGIPRGFVVAVVGEPGTGKTVFCIHFIGKGLEMGDKGIYVTTE 64

Query: 105 HALDSIY--ARKLGVDLKNLL 123
            + +SI   A    +DL+  L
Sbjct: 65  ESRESIIRQAAMFNIDLRKYL 85


>gi|326427154|gb|EGD72724.1| DMC1 protein [Salpingoeca sp. ATCC 50818]
          Length = 340

 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 92/214 (42%), Gaps = 34/214 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-------KTGGTCAF 100
           +S+G+  LD  LG GG    +I EI+G   +GK+ + +     +Q        +GG   +
Sbjct: 101 ISTGAKELDAILG-GGIESQQITEIHGEYRTGKSQICMTLCISAQVPTDETNYSGGKVIY 159

Query: 101 VDAEHA-----LDSIYARKLGVD----LKNLLISQPDTGEQ-ALEITD----MLVRSGAV 146
           +D E A     L+ I  R   VD    L N+   +    EQ A  + D    +   +G V
Sbjct: 160 IDTEGAFRPERLEGICDR-FNVDYQAALNNVYFCRAYNSEQLATLMADVGAILAQEAGIV 218

Query: 147 DIIVIDSVAALTPRAEI--EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +++IDS+ A T R +    G++ E     + ++++Q L  +          +V  NQM 
Sbjct: 219 RLLIIDSIMA-TFRTDYCGRGELAE-----RQQMLNQVLAAIKRLAEEWNLAVVLTNQMC 272

Query: 205 MKIGV---MFGSPETTTGGNALKFYSSVRLDIRR 235
              G        P+   GG+ L      RL +R+
Sbjct: 273 SDPGATMSFVSDPKKPVGGHILAHAVQTRLSLRK 306


>gi|312793724|ref|YP_004026647.1| DnaB domain-containing protein helicase domain-containing protein
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180864|gb|ADQ41034.1| DnaB domain protein helicase domain protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 608

 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 8/124 (6%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIF---EGIEVVSSGSLGLDIALGIGGFPKGR 68
           +S+ +   L Q++  +   A++   +Q   F   E  + +S+G   LD  L  GGF  G 
Sbjct: 297 QSEVINFLLWQLKAAFYPYALINFAAQYVDFIKSEKFKAISTGFKQLDDVLN-GGFVAGN 355

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA----EHALDSIYARKLGVDLKNLLI 124
           +       S GKTT  L  I    + G  C F+ A    E  L  I+ R+ G+   N+ +
Sbjct: 356 LYVFGAKPSVGKTTFLLQLIDNFLQQGYECVFLSAEMPKEEILTRIFCREYGLKKANVKV 415

Query: 125 SQPD 128
              D
Sbjct: 416 PAFD 419


>gi|298674073|ref|YP_003725823.1| DNA repair and recombination protein RadB [Methanohalobium
           evestigatum Z-7303]
 gi|298287061|gb|ADI73027.1| DNA repair and recombination protein RadB [Methanohalobium
           evestigatum Z-7303]
          Length = 222

 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 89/211 (42%), Gaps = 16/211 (7%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + SG   LD  LG GGF  G + ++YG   SGKT L +    +  K      +VD E AL
Sbjct: 5   LPSGCKPLDNLLG-GGFETGIVSQVYGEPGSGKTNLCIQLSVECVKQEKKVIYVDTE-AL 62

Query: 108 DSIYARKLGVD-----LKNLLISQP-DTGEQALEITDM-LVRSGAVDIIVIDSVAALTPR 160
                +++  D      +N++I +P +  EQ   I D   +    + +I++DS  A   R
Sbjct: 63  SPDRFKQIAGDNSKEIAQNIIIYEPFNFEEQYSAIKDTEKISEENIGLIIVDSATAFY-R 121

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
            E+E    E       R +S  +  L     +    +V  NQ+          P    GG
Sbjct: 122 FELE---NEDSSIQTRRELSNQIGYLHGLARKHSLSVVITNQIYTDASTGEVKP---IGG 175

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           + ++  S   L   R G+ K +  +  +++R
Sbjct: 176 SGIEHLSKTILQFERTGNNKRRAILQKHRSR 206


>gi|86159366|ref|YP_466151.1| putative circadian clock protein, KaiC [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775877|gb|ABC82714.1| putative circadian clock protein, KaiC [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 496

 Score = 43.1 bits (100), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +G  GLD  LG GGFP+ RI  I G   +GKTTLAL  + +  + G +C ++
Sbjct: 12  PTGVAGLDDVLG-GGFPRRRIHLIQGSPGAGKTTLALQFLMEGVRQGESCLYI 63


>gi|7328532|dbj|BAA92869.1| Pprad51 [Penicillium paxilli]
          Length = 347

 Score = 43.1 bits (100), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 105/244 (43%), Gaps = 35/244 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  LG GG   G I EI+G   +GK+ +  HT+A + +         G C +
Sbjct: 103 ITTGSKRLDTLLG-GGIETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 160

Query: 101 VDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDII 149
           +D E     +     A++ G+     L N+  ++    +  L++ +    ++      ++
Sbjct: 161 IDTEGTFRPVRLLAVAQRFGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 220

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           ++DS  AL  R +  G  GE L   Q  L ++ LR L          +V  NQ+  ++  
Sbjct: 221 IVDSATALY-RTDFNG-RGE-LSSRQTHL-AKFLRTLQRLADEFGVAVVITNQVVAQVDG 276

Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               MF   P+   GGN +   S+ RL ++      RV  I D   +  +     + ++ 
Sbjct: 277 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRVCKIYDSPCLPESDCLFAINEDG 336

Query: 259 MASP 262
           +  P
Sbjct: 337 IGDP 340


>gi|112419535|dbj|BAF02935.1| RAD51 homolog [Populus nigra]
          Length = 342

 Score = 43.1 bits (100), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 93/221 (42%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           ++SGS  LD  L  GG   G I E+YG   SGKT L  HT+  + +         G   +
Sbjct: 105 ITSGSRELDKILE-GGVETGSITEMYGEFRSGKTQLC-HTLCVTCQLPLDQGGGEGKAMY 162

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +DAE                      L+++ YAR    D ++ L+         LE   M
Sbjct: 163 IDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL---------LEAASM 213

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           +V +    ++++DS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 214 MVET-RFALMIVDSATALY-RTDFSG-RGE----LSARQMHLAKFLRSLQKLADEFGVAV 266

Query: 198 VFINQMRMKI--GVMFGSPE-TTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++    +F  P+    GGN +   S+ RL +R+
Sbjct: 267 VITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRK 307


>gi|327310834|ref|YP_004337731.1| Fis family transcriptional regulator [Thermoproteus uzoniensis
           768-20]
 gi|326947313|gb|AEA12419.1| transcriptional regulator, Fis family [Thermoproteus uzoniensis
           768-20]
          Length = 313

 Score = 43.1 bits (100), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 91/206 (44%), Gaps = 24/206 (11%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GTCAFVDAE 104
           + V +G   LD     GG  +G I E  G   +GK+ LA     +S   G G   ++D E
Sbjct: 82  KAVKTGVAELDEKSPWGGLREGFIFEFAGEFGAGKSMLAHQIAVKSIAEGFGDAVYIDTE 141

Query: 105 ----HALDSIYARKLGVD----LKNLLISQPD--TGEQALEITDM--LVRSGAVDIIVID 152
                AL    AR+ G D    L  + +  PD  +  +A   +++   ++ GA   +V+D
Sbjct: 142 GTFSPALAERMARRFGADPAAVLDKIFVYVPDNVSALEAFVKSELPAHLKEGA-RTVVVD 200

Query: 153 SVAALTPRAEIEGDMGESLPGMQARL--MSQALRKLTSSISRSKCILVFINQ-MRMKIGV 209
           ++ AL  RAE  G   ESL   Q RL  +    R+ T   +    ++VF NQ M +    
Sbjct: 201 TITALY-RAEFVGR--ESLAERQQRLHYLVDWFRRHTRVFN---ALVVFTNQVMDVPEAF 254

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRR 235
           M G  +   GGN L    + R  + R
Sbjct: 255 MTGL-KRPAGGNVLAHAVNARFMMAR 279


>gi|222154113|gb|ACM47236.1| disrupted meiotic cDNA 1 protein [Triticum aestivum]
          Length = 344

 Score = 43.1 bits (100), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 26/208 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  LD  LG GG     I E +G   SGKT LA HT+  S +         G  A+
Sbjct: 108 ITTGSQALDELLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSTQLPLHMHGGNGKVAY 165

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149
           +  E           A + G+D    L N++ ++  T E    +   LV   A +   ++
Sbjct: 166 IGTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLVAKMAEEPFRLL 225

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DSV AL  R +  G  GE L   Q +L +Q L +LT         +   NQ+    G 
Sbjct: 226 IVDSVIALF-RVDFSGR-GE-LAERQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281

Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIRR 235
            +    P+   GG+ L   +++RL +R+
Sbjct: 282 GMFITDPKKPAGGHVLAHAATIRLMLRK 309


>gi|324517282|gb|ADY46774.1| DNA repair protein RAD51 3 [Ascaris suum]
          Length = 266

 Score = 43.1 bits (100), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 29/178 (16%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI--AQSQKTGGTCAFVDA 103
           E++S+G + LD  LG GG   G  +EI G  S+GK+ L +      Q  K    C +VD 
Sbjct: 29  EILSTGVIQLDTLLG-GGITAGTFLEIVGLSSAGKSQLCMQLAVNVQKHKRRNECVYVDT 87

Query: 104 E-------------HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV-RSGAVDII 149
           E               L S Y       + +            L   D L+ ++  + +I
Sbjct: 88  EGGFSTKRICDIAMRCLPSEYVASCLQRIHHCRCHDAVQLTSTLHRLDTLISQNPKIGLI 147

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS-KCILVFINQMRMK 206
           ++DSV A+  R EI+            R M      L SS++ S +C+++ +N +  +
Sbjct: 148 IVDSV-AMPLRGEID----------HMRHMIMDFSCLLSSLAVSCRCVVIVVNHVAFR 194


>gi|312383584|gb|EFR28621.1| hypothetical protein AND_03252 [Anopheles darlingi]
          Length = 338

 Score = 43.1 bits (100), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 92/214 (42%), Gaps = 37/214 (17%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA------QSQKTG-GTCAF 100
           +++GS  LD  LG GG   G I E++G   +GKT L  HT+A       SQ  G G C +
Sbjct: 101 LTTGSKELDKLLG-GGIETGSITEMFGEFRTGKTQLC-HTLAVTCQLPVSQNGGEGKCLY 158

Query: 101 VDA------EHALDSIYARKL-GVD-LKNLLISQP---DTGEQALEITDMLVRSGAVDII 149
           +D       E  L +    KL G D L N+  ++    D   Q L +   ++      +I
Sbjct: 159 IDTEGTFRPERLLATAERYKLVGTDVLDNVAYARAYNTDHQMQLLMLASAMMVESRYALI 218

Query: 150 VIDSVAAL-----TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           ++DS  +L       R E+    G          M++ LR L          ++  NQ+ 
Sbjct: 219 IVDSATSLYRTDYCGRGELAARQGH---------MAKFLRMLLRLADEFGVAVIITNQVV 269

Query: 205 MKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
            ++    MF   P+   GGN +   S+ RL +R+
Sbjct: 270 AQVDGAAMFNPDPKKPVGGNIIGHASTTRLYLRK 303


>gi|319407050|emb|CBI80687.1| DNA repair protein [Bartonella sp. 1-1C]
          Length = 462

 Score = 43.1 bits (100), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 22/163 (13%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG I+ L S     E +  + SG   LD   G GGF +G  + I G    GK+TL   T 
Sbjct: 52  KGHIVTLTSLSGNIENVPRIHSGIAELDRVTG-GGFVRGSALLIAGDPGIGKSTLLTQTA 110

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ---ALEITDMLVRSGA 145
           A   + G    +V  E A+  I        L+   ++  DT  Q      + D+L    A
Sbjct: 111 AALSQKGYNVIYVSGEEAITQI-------RLRAQRLNATDTAVQLAAETNVEDILATLNA 163

Query: 146 ---VDIIVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQAL 183
              +D++++DS+  L        ++ +S PG   Q R+ +QA+
Sbjct: 164 HEKLDMVIVDSIQTLW------SNLADSAPGTVTQVRISAQAM 200


>gi|222617117|gb|EEE53249.1| hypothetical protein OsJ_36165 [Oryza sativa Japonica Group]
          Length = 292

 Score = 43.1 bits (100), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 83/194 (42%), Gaps = 36/194 (18%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V++GS  LD  L  GG   G I EIYG   SGKT L  HT+            V  +  L
Sbjct: 94  VTTGSRELDKILD-GGIETGSITEIYGEFRSGKTQLC-HTLC-----------VTCQLPL 140

Query: 108 DSIYARKLGVDLKNLLISQPDT--GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           D     + G + K L I    T   ++ L+I D         I+++DS  AL  R +  G
Sbjct: 141 D-----QGGGEGKALYIDAEGTFRPQRLLQIADRFA------IMIVDSATALY-RTDFSG 188

Query: 166 DMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMKI--GVMFGSPETTTGGN 221
             GE    + AR M  A  LR L          +V  NQ+  ++    MFG      GGN
Sbjct: 189 -RGE----LSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGAAMFGPQIKPIGGN 243

Query: 222 ALKFYSSVRLDIRR 235
            +   S+ RL +R+
Sbjct: 244 IMAHASTTRLFLRK 257


>gi|320032013|gb|EFW13969.1| meiotic recombination protein dmc1 [Coccidioides posadasii str.
           Silveira]
          Length = 338

 Score = 43.1 bits (100), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 105/237 (44%), Gaps = 37/237 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IA 89
           M+LG Q    + +  +S+GS   D  L  GGF    I E+YG    GKT L+ HT   +A
Sbjct: 87  MELGHQR---KRVVRISTGSKQFDAILN-GGFQSMSISEVYGEFRCGKTQLS-HTMSVVA 141

Query: 90  QSQKT----GGTCAFVDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEIT 137
           Q  ++     G  A++D E           A + GVD    L+N+  ++    E  LE+ 
Sbjct: 142 QLPRSMGGAEGKVAYIDTEGTFRPERVGQIAERFGVDPDSSLENIAYARALNSEHQLELL 201

Query: 138 DMLVRS---GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           + L +    G   +++IDS+     R +  G  GE L   Q +L +Q L KL        
Sbjct: 202 NTLSKEFAGGEYRLLIIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFN 257

Query: 195 CILVFINQMRMKIG--VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241
             ++  NQ++   G   +F   +     GG+ L   S+ R+ +R      RV  I+D
Sbjct: 258 VCVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTRVLLRKGRGEERVAKIQD 314


>gi|227533662|ref|ZP_03963711.1| DNA repair protein RadA [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227188646|gb|EEI68713.1| DNA repair protein RadA [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 396

 Score = 43.1 bits (100), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 23/171 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V +G   L+  LG GG   G +V I G    GK+TL L    Q   TGGT  +V  E + 
Sbjct: 12  VKTGLDELNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSGQLANTGGTVLYVSGEESA 70

Query: 108 DSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
             I  R  +LGV    + +  P+T   ++E    ++     D +VIDSV  +        
Sbjct: 71  SQIKMRAGRLGVANSGMYL-YPETDMPSIE---DVINQMQPDYVVIDSVQTM-------- 118

Query: 166 DMGESLPGMQARLMSQA-LRKLTSS---ISRSKCILVFINQMRMKIGVMFG 212
               ++P M + + S A +R++T+    I++SK + +FI     K G + G
Sbjct: 119 ----NVPEMNSAVGSVAQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAG 165


>gi|304314595|ref|YP_003849742.1| circadian clock related protein [Methanothermobacter marburgensis
           str. Marburg]
 gi|302588054|gb|ADL58429.1| circadian clock related protein [Methanothermobacter marburgensis
           str. Marburg]
          Length = 237

 Score = 43.1 bits (100), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 105/246 (42%), Gaps = 46/246 (18%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + I  + +G  GLD    IGG+P+GR + + G   +GKT +ALH   +S + G    +V
Sbjct: 1   MDAIPRLGTGVKGLDDI--IGGYPQGRSILVTGDAGAGKTIMALHFAIESARKGLKTVYV 58

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
             E             D  +L I     G       D L+ SGA+ II + ++ A    A
Sbjct: 59  TTEE------------DETDLRIQCASLGWD----IDELMESGALKIIGLSAIRARLTEA 102

Query: 162 EIEGDMGESLPGMQARLMSQ---------------ALRKLTSSISRSKC-ILVFINQMRM 205
           EI   + ES+ G   +++++                  KLT+   R +  +L++  + R 
Sbjct: 103 EIHIGI-ESVKGNLQKILAEIPEDTEVLVIDSIGSHTEKLTTHEFRDQFDLLIYELKKRG 161

Query: 206 KIGVMFGSPETTTGGNALKFYS---SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
              ++     T+   N +  Y+   +++L       IK ++  TG + RV  +  KM S 
Sbjct: 162 ITALIILDSATSMEFNEIALYAVYGAIKL-------IKRENPYTGRRERVMDII-KMRST 213

Query: 263 FKQVEF 268
              +EF
Sbjct: 214 RTPIEF 219


>gi|260584279|ref|ZP_05852026.1| DNA repair protein RadA [Granulicatella elegans ATCC 700633]
 gi|260157797|gb|EEW92866.1| DNA repair protein RadA [Granulicatella elegans ATCC 700633]
          Length = 458

 Score = 43.1 bits (100), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 8/123 (6%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           +E ++ V +    LD  LG GG   G +V I G    GK+TL L   +Q QK GG+  +V
Sbjct: 69  YERVKRVETSMQELDRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSSQLQKAGGSVLYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT- 158
             E +   +  R  +LG+      I  P+T  QA+ +T   V     D ++IDS+  +  
Sbjct: 128 SGEESAAQVKMRAERLGMQADGFYI-YPETDLQAV-VTQ--VEQLKPDYVIIDSIQTMAH 183

Query: 159 PRA 161
           P+A
Sbjct: 184 PQA 186


>gi|147920776|ref|YP_685418.1| DNA repair and recombination protein RadB [uncultured methanogenic
           archaeon RC-I]
 gi|110620814|emb|CAJ36092.1| DNA repair/recombination protein B [uncultured methanogenic
           archaeon RC-I]
          Length = 221

 Score = 43.1 bits (100), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 25/204 (12%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  + +G+  +D  LG GG   G + +IYG  +SGKT + +     + +TG    ++D E
Sbjct: 2   ISRLPTGAKPIDDLLG-GGIETGTVTQIYGEPASGKTNICMQLAINTLRTGKRVIYIDTE 60

Query: 105 HALDSIYARKLGVDLKNL----LISQPDTGEQ---ALEITDMLVRSGAVDIIVIDSVAAL 157
                 +++  G D   L    +I  P + E+   A++  + L+    V ++++DS  A 
Sbjct: 61  GFSVERFSQIAGEDAHELARQVIIFTPLSFEEQFAAIKDAEKLIGQN-VGLVILDSATAF 119

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTS--SISRSKCILVFI-NQMRMKIGVMFGSP 214
             R E EG  G        R M +   ++T+   ++R   I V I NQ+   I    GS 
Sbjct: 120 Y-RIEREGKDG-------IRPMQELASQVTALLGMARKHGIPVVITNQIYTDI----GSE 167

Query: 215 E-TTTGGNALKFYSSVRLDIRRVG 237
           E   TGG  L+  S   ++++R G
Sbjct: 168 EFRATGGKWLEHISKAIVELKRNG 191


>gi|162457934|ref|NP_001104919.1| DNA repair protein RAD51 homolog B [Zea mays]
 gi|55976630|sp|Q9XED7|R51A2_MAIZE RecName: Full=DNA repair protein RAD51 homolog B; AltName:
           Full=Rad51-like protein B; Short=RAD51B; AltName:
           Full=ZmRAD51b
 gi|4886754|gb|AAD32030.1|AF079429_1 RAD51 homolog RAD51B [Zea mays]
 gi|223945143|gb|ACN26655.1| unknown [Zea mays]
          Length = 340

 Score = 43.1 bits (100), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 93/221 (42%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G I E+YG   SGKT L  HT+  + +         G   +
Sbjct: 103 LTTGSRELDQILD-GGIETGSITEMYGEFRSGKTQLC-HTLCVTCQLPLDQGGGEGKALY 160

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +DAE                      L+++ YAR    D ++ L+         LE   M
Sbjct: 161 IDAEGTFRPQRILQIADRFGLNGADVLENVAYARAYNTDHQSRLL---------LEAASM 211

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           +V +    ++V+DS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 212 MVET-RFALMVVDSATALY-RTDFSG-RGE----LSARQMHLAKFLRSLQKLADEFGVAV 264

Query: 198 VFINQMRMKI--GVMFGSPE-TTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++    MF  P+    GGN +   S+ RL +R+
Sbjct: 265 VITNQVVAQVDGAAMFAGPQIKPIGGNIMAHASTTRLFLRK 305


>gi|50294774|ref|XP_449798.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49529112|emb|CAG62776.1| unnamed protein product [Candida glabrata]
          Length = 466

 Score = 43.1 bits (100), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 23/129 (17%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGG---TCAFVD 102
           ++G LG+D  LG GG     I EI+G  S+GK+ L +      Q     GG    C F+ 
Sbjct: 87  TTGDLGIDEVLG-GGISTNCITEIFGESSTGKSQLLMQLCLSVQLPISEGGLNAKCVFIT 145

Query: 103 AEHALDS------IYARK----LGVDLKNLL-ISQPDTGEQA----LEITDMLVRS-GAV 146
            E  L +      I ARK    LG+   N+  +S PD   Q     +++  +L R+ G +
Sbjct: 146 TEGDLPTNRLAGMIEARKDWHELGISQSNIFTVSCPDLISQEHIVNVQLPVLLERNKGEI 205

Query: 147 DIIVIDSVA 155
            +I+IDS++
Sbjct: 206 KLIIIDSIS 214


>gi|295689701|ref|YP_003593394.1| DNA repair protein RadA [Caulobacter segnis ATCC 21756]
 gi|295431604|gb|ADG10776.1| DNA repair protein RadA [Caulobacter segnis ATCC 21756]
          Length = 460

 Score = 43.1 bits (100), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 16/130 (12%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR--KLGVDL 119
           GG   G  + I G    GK+TL L   A +   G +CA++  E A++ I  R  ++G+  
Sbjct: 84  GGVVPGSAILIGGDPGVGKSTLLLQVCASAAARGVSCAYISGEEAVEQIRGRADRMGLSK 143

Query: 120 KNLLISQPDTGEQAL-EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG--MQA 176
            N+ ++     E AL +I D L R    D++VIDS+  +        D  E+ PG   Q 
Sbjct: 144 SNVSLAA----ETALRDILDGLKRDN-FDLVVIDSIQTMW------SDAHEAGPGTVTQV 192

Query: 177 RLMSQALRKL 186
           R  +  L +L
Sbjct: 193 RACATELVRL 202


>gi|125536708|gb|EAY83196.1| hypothetical protein OsI_38408 [Oryza sativa Indica Group]
          Length = 294

 Score = 43.1 bits (100), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 83/194 (42%), Gaps = 36/194 (18%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V++GS  LD  L  GG   G I EIYG   SGKT L  HT+            V  +  L
Sbjct: 96  VTTGSRELDKILD-GGIETGSITEIYGEFRSGKTQLC-HTLC-----------VTCQLPL 142

Query: 108 DSIYARKLGVDLKNLLISQPDT--GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           D     + G + K L I    T   ++ L+I D         I+++DS  AL  R +  G
Sbjct: 143 D-----QGGGEGKALYIDAEGTFRPQRLLQIADRFA------IMIVDSATALY-RTDFSG 190

Query: 166 DMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMKI--GVMFGSPETTTGGN 221
             GE    + AR M  A  LR L          +V  NQ+  ++    MFG      GGN
Sbjct: 191 -RGE----LSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGAAMFGPQIKPIGGN 245

Query: 222 ALKFYSSVRLDIRR 235
            +   S+ RL +R+
Sbjct: 246 IMAHASTTRLFLRK 259


>gi|300175731|emb|CBK21274.2| unnamed protein product [Blastocystis hominis]
          Length = 292

 Score = 43.1 bits (100), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 98/213 (46%), Gaps = 33/213 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI-------AQSQKTGGTCAF 100
           +++GS  LD  LG GG     I EI+G   +GKT LA HT+       ++     G   F
Sbjct: 53  ITTGSSDLDTLLG-GGIETMSITEIFGEFRTGKTQLA-HTLCVTAQLPSEMHGANGKVIF 110

Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEI-----TDMLVRSGAVD 147
           +D E           A + G++    L N+L+++  T EQ +++       ++  +    
Sbjct: 111 LDTEGTFRPQRVVEIAGRYGLNGDEVLDNILLARAYTHEQQMDVITAAAAKIVEDNSPYH 170

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ--ALRKLTSSISRSKCILVFINQMRM 205
           ++V+DS+ AL  R +  G  GE L   Q +L     AL+KL    + +   +V INQ+  
Sbjct: 171 LLVVDSITALF-RVDYSG-RGE-LAERQQKLGRHLSALKKLAEEFNVA---VVIINQVTA 224

Query: 206 KIG--VMF-GSPETTTGGNALKFYSSVRLDIRR 235
             G   MF    +   GGN +   S+ RL  ++
Sbjct: 225 DPGAAAMFVKDTKKPIGGNIIAHASTTRLYFKK 257


>gi|322780402|gb|EFZ09890.1| hypothetical protein SINV_00924 [Solenopsis invicta]
          Length = 310

 Score = 43.1 bits (100), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 104/244 (42%), Gaps = 31/244 (12%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFE---GIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           EA   ++Q+   K  +M   S   I +    I  +++GS  LD  LG GG   G I E++
Sbjct: 38  EAKAEKLQQEASKMVMMGFKSATEIHQTRANIVYITTGSKELDKLLG-GGIETGSITELF 96

Query: 74  GPESSGKTTLALHTIAQSQK-------TGGTCAFVDAEHALDS----IYARKLGVD---- 118
           G   SGK+ L  HT+A + +         G C ++D E+          A K  ++    
Sbjct: 97  GEFRSGKSQLC-HTLAVNCQLPISMGGAEGKCLYIDTENTFRPERLIAVAEKYKINGPSV 155

Query: 119 LKNLLISQP---DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           L N+  ++    D   Q L +   ++      ++V+DS   L  R +  G  GE   G +
Sbjct: 156 LDNVACARAYNTDHQTQLLMLASAMMTEARYALLVVDSATGLY-RTDYSG-RGE--LGAR 211

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKI---GVMFGSPETTT-GGNALKFYSSVRL 231
              + + LR L          +V  NQ+  ++     MFG  +    GG+ L   S+ RL
Sbjct: 212 QNHLGRFLRMLLRLADEYGIAVVITNQVVAQVDGAASMFGGDQKKPIGGHILAHSSTTRL 271

Query: 232 DIRR 235
            +R+
Sbjct: 272 YLRK 275


>gi|125772735|ref|XP_001357643.1| GA20711 [Drosophila pseudoobscura pseudoobscura]
 gi|195159258|ref|XP_002020499.1| GL13479 [Drosophila persimilis]
 gi|54637375|gb|EAL26777.1| GA20711 [Drosophila pseudoobscura pseudoobscura]
 gi|194117268|gb|EDW39311.1| GL13479 [Drosophila persimilis]
 gi|225581186|gb|ACN94754.1| GA20711 [Drosophila miranda]
          Length = 335

 Score = 43.1 bits (100), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 97/213 (45%), Gaps = 28/213 (13%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GT 97
           + ++++GS  LD  LG GG   G I EI+G    GKT +  HT+A       SQK G G 
Sbjct: 92  VVMLTTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQIC-HTLAVTCQLPISQKGGEGK 149

Query: 98  CAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAV 146
           C ++D E        S  A++  ++    L N+  ++    +Q  ++  M   ++     
Sbjct: 150 CLYIDTESTFRTERLSAIAQRFKLNESEVLDNVSCARAYNSDQQTKLLQMAAGMLFETRY 209

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
             +++DSV AL  R++  G  GE L   Q  L    +R+L          +V  NQ+  +
Sbjct: 210 AAVIVDSVMALY-RSDYIG-RGE-LAARQNHL-GLCMRQLQRLADEFGVAVVITNQVTAQ 265

Query: 207 I----GVMFGSPETTTGGNALKFYSSVRLDIRR 235
           +    G+     +   GG+ L   S+ RL +R+
Sbjct: 266 LDGGGGMFVADAKKPVGGHILAHASTTRLYLRK 298


>gi|327401533|ref|YP_004342372.1| putative circadian clock protein KaiC [Archaeoglobus veneficus
           SNP6]
 gi|327317041|gb|AEA47657.1| putative circadian clock protein, KaiC [Archaeoglobus veneficus
           SNP6]
          Length = 241

 Score = 43.1 bits (100), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE V +G  GLD  +G GG PKG  V ++G   SGKT+ A+       + G +C FV+ +
Sbjct: 3   IERVGTGVPGLDTFMG-GGIPKGIDVVVHGDPGSGKTSFAIQFAKNGLENGESCIFVELD 61


>gi|323348906|gb|EGA83143.1| Rad51p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 296

 Score = 42.7 bits (99), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 20/129 (15%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  LG GG   G I E++G   +GK+ L  HT+A + +         G C 
Sbjct: 159 CLTTGSKNLDTLLG-GGVETGSITELFGEFRTGKSQLC-HTLAVTCQIPLDIGGGEGKCL 216

Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDI 148
           ++D E     +     A++ G+D    L N+  ++    +  L + D    ++      +
Sbjct: 217 YIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSL 276

Query: 149 IVIDSVAAL 157
           IV+DSV AL
Sbjct: 277 IVVDSVMAL 285


>gi|282165496|ref|YP_003357881.1| DNA repair and recombination protein RadB [Methanocella paludicola
           SANAE]
 gi|282157810|dbj|BAI62898.1| DNA repair and recombination protein RadB [Methanocella paludicola
           SANAE]
          Length = 227

 Score = 42.7 bits (99), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 96/201 (47%), Gaps = 19/201 (9%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  + +GS  LD  LG GGF  G I +++G  +SGKT + L     + + G    ++D E
Sbjct: 8   INRLPTGSKVLDGLLG-GGFEAGTISQLFGEPASGKTNICLQLAVNTLRAGKRVVYIDTE 66

Query: 105 HALDSIYARKLGVDLKNL---LIS-QPDTGEQ---ALEITDMLVRSGAVDIIVIDSVAAL 157
                 + +  G D + L   LI  +P + E+   A++ T+ +V    V +I++DS  A 
Sbjct: 67  GFSVERFQQIAGEDAQKLAQKLIHFKPTSFEEQYVAVKETEKIVGQN-VGLIILDSATAF 125

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMKIGVMFGSPET 216
             R E+E    +S+  ++  L +QA   +   ++R   I V I NQ+ M +         
Sbjct: 126 Y-RVELESR--DSML-LKRELANQA--TILLGLARKYDIAVVITNQIYMDVD---KEELR 176

Query: 217 TTGGNALKFYSSVRLDIRRVG 237
             GGN L+  S V + + R G
Sbjct: 177 AVGGNMLEHISKVIVQLSRTG 197


>gi|255088451|ref|XP_002506148.1| Rad51 DNA recombinase 2 [Micromonas sp. RCC299]
 gi|226521419|gb|ACO67406.1| Rad51 DNA recombinase 2 [Micromonas sp. RCC299]
          Length = 440

 Score = 42.7 bits (99), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 72/168 (42%), Gaps = 46/168 (27%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLAL---HTIAQSQKTGGT---CAFVDAE---- 104
           LD ALG GG P G I E+ GP  +GKT + L      A  ++ GG      F+D E    
Sbjct: 113 LDDALG-GGVPTGSISELVGPAGAGKTQMCLTLACACAAPKRCGGLESGVVFIDTEQRFS 171

Query: 105 -------------------HALDSIYA-RKLGVDLKNLLISQPDTGEQALE----ITDML 140
                              HA D+  A R+L      +L+  P T  + L+    + + L
Sbjct: 172 SQRLAEIARAKFPETLSPAHAPDAASAERELESLTSRILVLTPSTLSEMLQRLNGLEEAL 231

Query: 141 VRSGAVDIIVIDSVAA----------LTPRAEIEGDMGESLPGMQARL 178
           +  G V ++++DSVAA          LT R E+ G +  +L  +  RL
Sbjct: 232 IDRG-VRLLIVDSVAALARAQFGRGQLTQRQELLGQIASALKQLAERL 278


>gi|261403509|ref|YP_003247733.1| DNA repair and recombination protein RadA [Methanocaldococcus
           vulcanius M7]
 gi|261370502|gb|ACX73251.1| DNA repair and recombination protein RadA [Methanocaldococcus
           vulcanius M7]
          Length = 320

 Score = 42.7 bits (99), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 89/215 (41%), Gaps = 32/215 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA-------- 99
           +S+GS  LD  LG GG     I E  G   SGKT +A       Q      A        
Sbjct: 79  LSTGSKNLDEILG-GGLESQSITEFAGMFGSGKTQIAHQACVNLQCPDKIIADDSIKEEV 137

Query: 100 -------FVDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQAL---EITDMLV 141
                  ++D E           A  LG+D    LKN+ +++    +  +   E  + L+
Sbjct: 138 LNEPKAVYIDTEGTFRPERIIQMAEALGLDGQDVLKNIFVARAYNSDMQMLYAENVENLI 197

Query: 142 RSGA-VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           R G  V +++IDS+ + T R E    +G      + + + + +  L        C+++  
Sbjct: 198 REGHNVKLVIIDSLTS-TFRTEY---VGRGKLAERQQKLGRHMAMLNKLADLYNCVVIVT 253

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           NQ+  +   +FG  E   GG+ +   ++ R+ +R+
Sbjct: 254 NQVAARPDALFGPSEQAIGGHIVGHAATFRIFLRK 288


>gi|198420224|ref|XP_002126934.1| PREDICTED: similar to RAD51 homolog isoform 1 [Ciona intestinalis]
          Length = 338

 Score = 42.7 bits (99), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 93/221 (42%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G I EI+G   +GKT +  HTIA + +         G C +
Sbjct: 101 ITTGSKELDKLLQ-GGIETGSITEIFGEFRTGKTQIC-HTIAATCQLPIEQGGGEGKCLY 158

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E                      LD++ YAR    D ++ L+ Q             
Sbjct: 159 IDTEGTFRPERLLAVAERYGLNGADVLDNVAYARAYNTDHQSQLLIQAAA---------- 208

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS--QALRKLTSSISRSKCIL 197
           ++      +IV+DS  AL  R +  G  GE    + AR M   + LR L          +
Sbjct: 209 MMSETRYAVIVVDSATALY-RTDYSG-RGE----LSARQMHLGRFLRTLLRLADEFGVAV 262

Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           +  NQ+  ++  G MF + P+   GG+ +   S+ RL +R+
Sbjct: 263 IITNQVVAQVDGGAMFCADPKKPIGGHIMAHASTTRLYLRK 303


>gi|242051070|ref|XP_002463279.1| hypothetical protein SORBIDRAFT_02g041080 [Sorghum bicolor]
 gi|241926656|gb|EER99800.1| hypothetical protein SORBIDRAFT_02g041080 [Sorghum bicolor]
          Length = 237

 Score = 42.7 bits (99), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 2/66 (3%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFV 101
           E   V+ +G  G+D  LG GG  +G++ E+ GP SSGKT + LH+ + +  K  G   ++
Sbjct: 61  ENKHVLPTGLEGIDTLLG-GGLRQGQLTEVTGPSSSGKTQVCLHSASHAAVKHMGVVMYL 119

Query: 102 DAEHAL 107
           D  ++ 
Sbjct: 120 DTSNSF 125


>gi|319411653|emb|CBQ73697.1| DNA repair protein RAD51 [Sporisorium reilianum]
          Length = 354

 Score = 42.7 bits (99), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 92/211 (43%), Gaps = 31/211 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  LG GG   G I E+YG   +GK+ L  HT+A + +         G C +
Sbjct: 102 ITTGSKNLDAILG-GGMETGSITELYGEFRTGKSQLC-HTLAVTCQLPVDMGGGEGKCLY 159

Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     +     A + G++    L N+  ++    +  L++      ++      ++
Sbjct: 160 IDTEGTFRPVRLLAVAERYGLNGEEVLDNVAYARAYNADHQLQLLMQASAMMAESRFSLL 219

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMKI 207
           ++DS+ +L  R +  G  GE    + AR M  A  LR L          +V  NQ+  ++
Sbjct: 220 IVDSLTSLY-RTDFSG-RGE----LSARQMHLAKFLRGLMRLADEFGVAVVITNQVVAQV 273

Query: 208 ---GVMFGSPETTTGGNALKFYSSVRLDIRR 235
                     +   GGN +   S+ RL +R+
Sbjct: 274 DGATAFTADAKKPIGGNIVAHASTTRLSLRK 304


>gi|284161689|ref|YP_003400312.1| circadian clock protein, KaiC [Archaeoglobus profundus DSM 5631]
 gi|284011686|gb|ADB57639.1| putative circadian clock protein, KaiC [Archaeoglobus profundus DSM
           5631]
          Length = 236

 Score = 42.7 bits (99), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + +G  GLD+ L  GG  KGR   I G   +GKT L++H + +  K G    ++  E 
Sbjct: 9   EKIPTGVEGLDVMLK-GGLIKGRTYLIKGGPGTGKTILSMHFLVEGAKRGENVVYITLEE 67

Query: 106 ALDSIY--ARKLGVDLKNLLI 124
             + +      LG DL N+ I
Sbjct: 68  PENEVRENMETLGFDLSNVTI 88


>gi|238498922|ref|XP_002380696.1| meiotic recombination protein (Dmc1), putative [Aspergillus flavus
           NRRL3357]
 gi|220693970|gb|EED50315.1| meiotic recombination protein (Dmc1), putative [Aspergillus flavus
           NRRL3357]
          Length = 318

 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 98/222 (44%), Gaps = 34/222 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQK----TGGTCAF 100
           +S+GS   D  LG GGF    I E++G    GKT L+ HT   +AQ  K      G  A+
Sbjct: 79  ISTGSKQFDAILG-GGFQSMSISEVFGEFRCGKTQLS-HTMSVVAQLPKEMGGADGKVAY 136

Query: 101 VDAEHALD----SIYARKLGVDL----KNLLISQPDTGEQALEITDMLVRS---GAVDII 149
           +D E        +  A + GVD     +N+  ++    E  LE+ + L +    G   ++
Sbjct: 137 IDTEGTFRPERIAQIAERFGVDADSARENIAYARALNSEHQLELLNTLSKEFTGGEYRLL 196

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           +IDS+     R +  G  GE L   Q +L +Q L KL          ++  NQ++   G 
Sbjct: 197 IIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFNVCVLMTNQVQSDPGA 252

Query: 209 -VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241
             +F   +     GG+ L   S+ R+ +R      RV  I+D
Sbjct: 253 SALFAGADGRKPVGGHVLAHASTTRVLLRKGRGDERVAKIQD 294


>gi|289661806|ref|ZP_06483387.1| hypothetical protein XcampvN_01569 [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 505

 Score = 42.7 bits (99), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +++GS GLD  L  GG P  R+  + G   SGKTTLAL  +      G +C +V     +
Sbjct: 12  ITTGSTGLDTILR-GGLPPNRLYLLEGQPGSGKTTLALQFLLDGAAKGESCLYVTLSETI 70

Query: 108 DSI 110
           D +
Sbjct: 71  DEL 73



 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 80/178 (44%), Gaps = 27/178 (15%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VSSG   +D AL  GG  +G    + GP  +GKT LAL  +  + + G  C  ++ + 
Sbjct: 253 EPVSSGVERID-ALLHGGPLRGTSTLLTGPAGAGKTNLALQYVVAACERGEHCCVLEFDE 311

Query: 106 ALDSIYARK--LGVDLKNLL------ISQPD-----TGEQALEITDMLVRSGAVDIIVID 152
              ++  R   LG+DL+  L      + Q D      GE A  + D +   G   I+VID
Sbjct: 312 RTGTLLKRAEGLGMDLRKYLDSGLLELHQMDPAELTPGEFAWTVRDSVEERGC-RILVID 370

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           S+               S+P  + +LM Q + +L S +++S      IN  +  +G M
Sbjct: 371 SLNGYL----------SSMP-QEKQLMLQ-MHELLSYLNQSGVTTFLINPQQGLVGSM 416


>gi|289668761|ref|ZP_06489836.1| hypothetical protein XcampmN_09761 [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 505

 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +++GS GLD  L  GG P  R+  + G   SGKTTLAL  +      G +C +V     +
Sbjct: 12  ITTGSTGLDTILR-GGLPPNRLYLLEGQPGSGKTTLALQFLLDGAAKGESCLYVTLSETI 70

Query: 108 DSI 110
           D +
Sbjct: 71  DEL 73



 Score = 39.7 bits (91), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 27/178 (15%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E V SG   +D AL  GG  +G    + GP  +GKT LAL  +  + + G  C  ++ + 
Sbjct: 253 EPVPSGVKRID-ALLHGGPLRGTSTLLTGPAGAGKTNLALQYLVAACERGEHCCVLEFDE 311

Query: 106 ALDSIYARK--LGVDLKNLL------ISQPD-----TGEQALEITDMLVRSGAVDIIVID 152
              ++  R   LG+DL+  L      + Q D      GE A  + D +   G   I+VID
Sbjct: 312 RTGTLLKRAEGLGMDLRKYLDLGLLELHQMDPAELTPGEFAWTVRDSVEERGC-RILVID 370

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           S+               S+P  + +LM Q + +L S +++S      IN  +  +G M
Sbjct: 371 SLNGYL----------SSMP-QEKQLMLQ-MHELLSYLNQSGVTTFLINPQQGLVGSM 416


>gi|288932519|ref|YP_003436579.1| DNA repair and recombination protein RadB [Ferroglobus placidus DSM
           10642]
 gi|288894767|gb|ADC66304.1| DNA repair and recombination protein RadB [Ferroglobus placidus DSM
           10642]
          Length = 220

 Score = 42.7 bits (99), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 14/163 (8%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--- 104
           + +GS  +D  LG GG   G + +IYG   SGKT+L L     + K  G   ++D E   
Sbjct: 4   LPTGSSCIDSLLG-GGVETGTLTQIYGVSGSGKTSLCLMLTYNTVKRFGKAVYIDTEGLS 62

Query: 105 -HALDSIYARKLGVDLKNLLISQ-PDTGEQALEITDM--LVRSGAVDIIVIDSVAALTPR 160
              ++ I+  K    LK++ I    D   Q++ + ++  L     + ++VIDS+ +L  R
Sbjct: 63  PERVNQIFEDK--SVLKDVYIYDVYDFKMQSVAVREVAKLCEREEIVLVVIDSLTSLY-R 119

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           +E+E +  E     +  L+SQ L  L     +    +VF NQM
Sbjct: 120 SELEDE--EKQIKAKRELISQ-LTLLLGVARKHDLAVVFTNQM 159


>gi|320100447|ref|YP_004176039.1| putative circadian clock protein, KaiC [Desulfurococcus mucosus DSM
           2162]
 gi|319752799|gb|ADV64557.1| putative circadian clock protein, KaiC [Desulfurococcus mucosus DSM
           2162]
          Length = 264

 Score = 42.7 bits (99), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 9/98 (9%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + SG  GLD  L  GG P+G +V + G   +GKT +++  IA+  +TG    +V  E 
Sbjct: 4   ERIPSGVPGLD-ELIDGGIPRGFMVAVVGEPGTGKTAMSIQFIAKGLETGDKAVYVTTEE 62

Query: 106 ALDSIY--ARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           + +SI   A +  + LK      P   E  L + D L+
Sbjct: 63  SRESILRQAERFNIGLK------PYIEEGRLVVVDALM 94


>gi|18420327|ref|NP_568402.1| ATRAD51; ATP binding / DNA binding / DNA-dependent ATPase/ damaged
           DNA binding / nucleoside-triphosphatase/ nucleotide
           binding / protein binding / sequence-specific DNA
           binding [Arabidopsis thaliana]
 gi|55976288|sp|P94102|RAD51_ARATH RecName: Full=DNA repair protein RAD51 homolog 1; AltName:
           Full=Rad51-like protein 1; Short=AtRAD51
 gi|1706947|gb|AAB37762.1| RAD51 homolog [Arabidopsis thaliana]
 gi|1706949|gb|AAC49555.1| AtRAD51 [Arabidopsis thaliana]
 gi|2388778|emb|CAA04529.1| Rad51-like protein [Arabidopsis thaliana]
 gi|332005514|gb|AED92897.1| DNA repair protein RAD51-like 1 [Arabidopsis thaliana]
          Length = 342

 Score = 42.7 bits (99), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 93/221 (42%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           ++SGS  LD  L  GG   G I E+YG   SGKT L  HT+  + +         G   +
Sbjct: 105 ITSGSRELDKVLE-GGIETGSITELYGEFRSGKTQLC-HTLCVTCQLPMDQGGGEGKAMY 162

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +DAE                      L+++ YAR    D ++ L+         LE   M
Sbjct: 163 IDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL---------LEAASM 213

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           ++ +    ++++DS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 214 MIET-RFALLIVDSATALY-RTDFSG-RGE----LSARQMHLAKFLRSLQKLADEFGVAV 266

Query: 198 VFINQMRMKI--GVMFGSPE-TTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++    +F  P+    GGN +   ++ RL +R+
Sbjct: 267 VITNQVVAQVDGSALFAGPQFKPIGGNIMAHATTTRLALRK 307


>gi|2500107|sp|Q40134|RAD51_SOLLC RecName: Full=DNA repair protein RAD51 homolog
 gi|1143810|gb|AAC23700.1| LeRAD51 [Solanum lycopersicum]
          Length = 342

 Score = 42.7 bits (99), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 92/221 (41%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           ++SGS  LD  L  GG   G I EIYG    GKT L  HT+  + +         G   +
Sbjct: 105 ITSGSKELDKILE-GGIETGSITEIYGEFRCGKTQLC-HTLCVTCQLPLDQGGGEGKAMY 162

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +DAE                      L+++ YAR    D ++ L+         LE   M
Sbjct: 163 IDAEGTFRPQRLLQIADRYGLNGPDVLENVAYARAYNTDHQSRLL---------LEAASM 213

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           +V +    ++++DS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 214 MVET-RFALMIVDSATALY-RTDFSG-RGE----LSARQMHLAKFLRSLQKLADEFGVAV 266

Query: 198 VFINQMRMKI--GVMFGSPE-TTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++    +F  P+    GGN +   S+ RL +R+
Sbjct: 267 VITNQVVAQVDGSAVFAGPQIKPIGGNIMAHASTTRLALRK 307


>gi|116626592|ref|YP_828748.1| putative circadian clock protein, KaiC [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229754|gb|ABJ88463.1| putative circadian clock protein, KaiC [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 505

 Score = 42.7 bits (99), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 7/91 (7%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SG + LD  LG GG  +G    + GP  +GK+T+ L   A + + G    +V  +  L +
Sbjct: 256 SGIVELDALLG-GGLTQGTSTLLMGPAGAGKSTIGLRYAAAAAERGEYAYYVTFDEGLTT 314

Query: 110 IYARK--LGVDLKNLLISQPDTGEQALEITD 138
           +  R   LG+DL+ LL    D G   LE+ D
Sbjct: 315 LLERSSGLGIDLQPLL----DNGRLHLEVVD 341


>gi|269962020|ref|ZP_06176374.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833104|gb|EEZ87209.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 230

 Score = 42.7 bits (99), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 2/103 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSG   LD  LG GGFP   +VE+    S G+  L L    ++  + G  AF+     ++
Sbjct: 30  SSGFPELDALLG-GGFPPHGVVEMESVGSIGELRL-LAPYLEASLSRGVTAFIQPPALMN 87

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           S++   +G+D+  + +  P+    AL   +  ++SG    +++
Sbjct: 88  SLFLHSIGLDINQVWVITPEHQRDALWAAEQCLKSGVCTNVLL 130


>gi|188992000|ref|YP_001904010.1| Putative RecA/DnaB superfamily regulatory protein [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167733760|emb|CAP51965.1| Putative RecA/DnaB superfamily regulatory protein [Xanthomonas
           campestris pv. campestris]
          Length = 513

 Score = 42.7 bits (99), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 3/89 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +++G+ GLD  L  GG P  R+  + G   SGKTTLAL  + +    G +C ++     L
Sbjct: 21  IATGTSGLDTILR-GGLPSNRLYLLEGQPGSGKTTLALQFLLEGASKGESCLYITLSETL 79

Query: 108 DSI--YARKLGVDLKNLLISQPDTGEQAL 134
           D +   A+  G  L  L I +  + E  L
Sbjct: 80  DELQEVAQSHGWSLDALHIFELASAEAFL 108



 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 76/177 (42%), Gaps = 25/177 (14%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VSSG   +D  L  GG  +G    + GP  SGKT +AL  +A +   G  C   + + 
Sbjct: 262 EAVSSGVQEVDDLLH-GGPLRGTSTLLTGPAGSGKTNVALQYVAAACARGEHCCIFEFDE 320

Query: 106 ALDSIYAR--KLGVDLKNLLIS------QPDTGEQALEITDMLVRSGA----VDIIVIDS 153
              ++ AR   LG+DL+  L S      Q D  E +       VR+        ++VIDS
Sbjct: 321 RTGTLLARAESLGLDLRRHLESGMLELLQMDPAELSPGEFAWQVRASVEQRNCRLLVIDS 380

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +               S+P  + +LM Q + +L S +++S      IN     +G M
Sbjct: 381 LNGYL----------SSMP-QEKQLMLQ-MHELLSYLNQSGVTTFLINPQHGLVGTM 425


>gi|312212267|emb|CBX92350.1| similar to DNA repair protein RAD51 homolog 1 [Leptosphaeria
           maculans]
          Length = 348

 Score = 42.7 bits (99), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 29/211 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G I EI+G   +GK+ +  HT+A + +         G C +
Sbjct: 100 ITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 157

Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDII 149
           +D E     +     A + G+     L N+  ++    +  LE+ +    ++      ++
Sbjct: 158 IDTEGTFRPVRCLAVANRFGLSGEEVLDNVAYARAYNSDHQLELLNQAAQMMTETRFSLL 217

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           ++DS  +L  R +  G  GE L   Q  L ++ +R L          +V  NQ+  ++  
Sbjct: 218 IVDSATSLY-RTDFAG-RGE-LSSRQTHL-AKFMRTLQRLADEFGIAVVITNQVVAQVDG 273

Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
               MF   P+   GGN +   S+ RL +R+
Sbjct: 274 GPSAMFNPDPKKPIGGNIIAHASTTRLSLRK 304


>gi|239630187|ref|ZP_04673218.1| DNA repair protein RadA [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301067334|ref|YP_003789357.1| putative ATP-dependent serine protease [Lactobacillus casei str.
           Zhang]
 gi|239527799|gb|EEQ66800.1| DNA repair protein RadA [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300439741|gb|ADK19507.1| Predicted ATP-dependent serine protease [Lactobacillus casei str.
           Zhang]
          Length = 454

 Score = 42.7 bits (99), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 23/171 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V +G   L+  LG GG   G +V I G    GK+TL L    Q   TGGT  +V  E + 
Sbjct: 70  VKTGLDELNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSGQLANTGGTVLYVSGEESA 128

Query: 108 DSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
             I  R  +LGV    + +  P+T   ++E    ++     D +VIDSV  +        
Sbjct: 129 SQIKMRAGRLGVANSGMYL-YPETDMPSIE---DVINQMQPDYVVIDSVQTM-------- 176

Query: 166 DMGESLPGMQARLMSQA-LRKLTSS---ISRSKCILVFINQMRMKIGVMFG 212
               ++P M + + S A +R++T+    I++SK + +FI     K G + G
Sbjct: 177 ----NVPEMNSAVGSVAQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAG 223


>gi|315230128|ref|YP_004070564.1| circadian clock KaiC-like protein [Thermococcus barophilus MP]
 gi|315183156|gb|ADT83341.1| circadian clock KaiC-like protein [Thermococcus barophilus MP]
          Length = 231

 Score = 42.7 bits (99), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G  GLD  L  GG   GR   + G   SGKTTL +H + +  K G    ++  E  +
Sbjct: 4   ISTGVKGLDKMLN-GGLIPGRAYLVKGGPGSGKTTLCIHFLMEGVKRGEKVLYITLEEPI 62

Query: 108 DSIY--ARKLGVDLKNLLI 124
           D +    R++G D+ N L 
Sbjct: 63  DILKEDMREMGFDVDNPLF 81


>gi|327400087|ref|YP_004340926.1| DNA repair and recombination protein radA [Archaeoglobus veneficus
           SNP6]
 gi|327315595|gb|AEA46211.1| DNA repair and recombination protein radA [Archaeoglobus veneficus
           SNP6]
          Length = 328

 Score = 42.4 bits (98), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 96/211 (45%), Gaps = 29/211 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  LG GG     I E++G   SGKT +  H +A + +         G+   
Sbjct: 91  ITTGSKALDELLG-GGVETQSITELFGEFGSGKTQIC-HQLAVNVQLPRDLGGLEGSVIV 148

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQP-DTGEQAL------EITDMLVRSGA 145
           +D E+          A   G+D    L+N+ ++Q  ++  Q L      E+ + L + G 
Sbjct: 149 IDTENTFRPERIIQMAEAKGLDPEEVLRNIYVAQAYNSNHQMLLVDNAKELANKLKKEGK 208

Query: 146 -VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            V ++++DS+ A   RAE  G    +L   Q +L ++ L  L          +V  NQ++
Sbjct: 209 QVKLLIVDSLMAHF-RAEYVGRG--TLADRQQKL-NKHLHDLMRFGEIFNAAIVVTNQVQ 264

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
            K    FG P    GG+ +   ++ R+ +R+
Sbjct: 265 AKPDTFFGDPTKPVGGHIVAHTATFRIYLRK 295


>gi|322706756|gb|EFY98336.1| hypothetical protein MAA_06445 [Metarhizium anisopliae ARSEF 23]
          Length = 386

 Score = 42.4 bits (98), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 17/107 (15%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIAL------------GI 61
           ++L A+  ++  V    A+ +L   G+++     +S+G   LD AL             +
Sbjct: 39  QSLTASTDRLPTVQASQALNELQDDGNLY-----LSTGLEELDQALLPPTPAGSPGSTSV 93

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           GG  +G+I EI+GP  +GKT +++   A S   G    ++D    +D
Sbjct: 94  GGIKRGQITEIWGPSGTGKTAVSIQLAANSIHNGNDVVWIDCFQEMD 140


>gi|302697701|ref|XP_003038529.1| hypothetical protein SCHCODRAFT_103780 [Schizophyllum commune H4-8]
 gi|300112226|gb|EFJ03627.1| hypothetical protein SCHCODRAFT_103780 [Schizophyllum commune H4-8]
          Length = 339

 Score = 42.4 bits (98), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 100/253 (39%), Gaps = 54/253 (21%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  LG GG   G I E++G   +GK+ L  HT+A + +         G C +
Sbjct: 99  ITTGSKQLDALLG-GGIETGAITELFGEFRTGKSQLC-HTLAVTCQLPVSMGGGEGKCLY 156

Query: 101 VDA--------------------EHALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D                     E  LD++ YAR    D +N L++              
Sbjct: 157 IDTEGTFRPVRLLAVAERFGLNGEEVLDNVAYARAYNADHQNSLLTS----------ASA 206

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           L+      ++++DS  AL  R +  G  GE L   Q  L  + LR L          +V 
Sbjct: 207 LMSESRFCLLIVDSCTALY-RTDFSG-RGE-LSSRQNHL-GKFLRTLQRLADEFGIAVVV 262

Query: 200 INQMR----MKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249
            NQ+        G   G+ +   GGN +   S+ RL ++      R   I D   +   +
Sbjct: 263 TNQVMSNPDAAAGPYAGNEKKPIGGNIMAHASTTRLQLKKARGNTRSCKIYDSPCLPEME 322

Query: 250 TRVKVVKNKMASP 262
           T   ++++ +  P
Sbjct: 323 THFAILQSGIGDP 335


>gi|241007827|ref|XP_002405184.1| DNA repair protein RAD51/RHP55, putative [Ixodes scapularis]
 gi|215491711|gb|EEC01352.1| DNA repair protein RAD51/RHP55, putative [Ixodes scapularis]
          Length = 352

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 97/214 (45%), Gaps = 37/214 (17%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-----QKTG--GTCAF 100
           +++GS  LD  LG GG   G I E++G   +GKT L  H +A +     + +G  G C +
Sbjct: 115 ITTGSTELDKLLG-GGIETGSITEVFGEFRTGKTQLC-HMMAVTCQLPIEHSGGEGKCLY 172

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------ 146
           +D E           A K G+     L N+  ++    +     T +L+++ A+      
Sbjct: 173 IDTEGTFRPERLLAAAEKYGLSGPDVLDNVAYARAYNSDHQ---TQLLIQASAMMAETRY 229

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMR 204
            ++V+DS  AL  R +  G  GE    + AR M  A  LR L          ++  NQ+ 
Sbjct: 230 ALLVVDSAMALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAVLITNQVV 283

Query: 205 MKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
            ++    MF + P+   GGN +   S+ RL +R+
Sbjct: 284 AQVDGASMFAADPKKPIGGNIMAHASTTRLYLRK 317


>gi|258592049|emb|CBE68354.1| conserved protein of unknown function [NC10 bacterium 'Dutch
           sediment']
          Length = 214

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 8/100 (8%)

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY----ARKLGVDLKNL 122
           GR+VEI G  ++   TLA   + Q+Q+      ++  +   DS++      + GVDL  L
Sbjct: 32  GRLVEISGVGATAPLTLAFGLVLQAQRQNEPVVWITRD---DSLFYPPDTAESGVDLDIL 88

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVID-SVAALTPRA 161
            I +           D LVRSGA  ++V+D S  A  PRA
Sbjct: 89  TIVRVPDNRAVARAADQLVRSGAFGLVVLDLSAPARAPRA 128


>gi|225680556|gb|EEH18840.1| DNA repair and recombination protein radA [Paracoccidioides
           brasiliensis Pb03]
          Length = 337

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 105/237 (44%), Gaps = 37/237 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IA 89
           M+LG Q    + +  +S+GS   D  L  GGF    I E+YG    GKT L+ HT   +A
Sbjct: 86  MELGHQR---KRVVKISTGSKQFDSILA-GGFQSMSISEVYGEFRCGKTQLS-HTMSVVA 140

Query: 90  QSQK----TGGTCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEIT 137
           Q  K      G  A++D E        +  A + GVD    L+N+  ++    E  LE+ 
Sbjct: 141 QLPKDMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELL 200

Query: 138 DMLVRSGA---VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           + L +  A     +++IDS+     R +  G  GE L   Q +L +Q L KL        
Sbjct: 201 NTLSKEFAGSEYRLLIIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFN 256

Query: 195 CILVFINQMRMKIG--VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241
             ++  NQ++   G   +F   +     GG+ L   S+ R+ +R      RV  I+D
Sbjct: 257 VCVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTRVLLRKGRGEERVAKIQD 313


>gi|307153406|ref|YP_003888790.1| putative circadian clock protein KaiC [Cyanothece sp. PCC 7822]
 gi|306983634|gb|ADN15515.1| putative circadian clock protein, KaiC [Cyanothece sp. PCC 7822]
          Length = 570

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 3/83 (3%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VSSG   LD  LG  G+ +   + I G   +GK+TLA H  A + + G  C ++  E 
Sbjct: 257 ERVSSGIPRLDKMLGGQGYYRNSSILITGTAGTGKSTLAAHFAAATCRRGERCLYMALEE 316

Query: 106 ALDSIY--ARKLGVDLKNLLISQ 126
           A   I    R +G+DL N  I+Q
Sbjct: 317 APQQILRNMRSVGLDL-NPFIAQ 338


>gi|91773967|ref|YP_566659.1| DNA repair and recombination protein RadA [Methanococcoides
           burtonii DSM 6242]
 gi|121691598|sp|Q12UG7|RADA_METBU RecName: Full=DNA repair and recombination protein radA
 gi|91712982|gb|ABE52909.1| DNA repair and recombination protein RadA [Methanococcoides
           burtonii DSM 6242]
          Length = 325

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 93/222 (41%), Gaps = 45/222 (20%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-------QSQKTGGTCAF 100
           +S+G    D  +G GG     I E+YG   SGKT +A H +A       +    GG+   
Sbjct: 82  LSTGCTEFDEMMG-GGIETQSITEMYGEFGSGKTQIA-HQLAVNVQLPPEQGGLGGSVIM 139

Query: 101 VDAEHA--------------------------LDSIY-ARKLGVDLKNLLISQPDTGEQA 133
           +D E+                           L +I+ AR    + + LL+   +     
Sbjct: 140 IDTENTFRPERIAQMVKGISDKHGIEYDPEEFLKNIHVARAFNSNHQILLVDSANELANE 199

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           L+ T+M V+     ++++DS+ A   RAE  G    +L   Q +L ++ L ++      S
Sbjct: 200 LKNTEMPVK-----LLIVDSLTAHF-RAEYIGR--GTLADRQQKL-NKHLHEILRFGDLS 250

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
              +V  NQ+  K    FG P    GG+ L   ++ RL IR+
Sbjct: 251 NACVVVTNQVMSKPDAFFGDPTKPIGGHILGHTATFRLYIRK 292


>gi|115394436|gb|ABI97150.1| Rad51 [Pneumocystis carinii]
 gi|115394438|gb|ABI97151.1| Rad51 [Pneumocystis carinii]
          Length = 343

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 94/213 (44%), Gaps = 34/213 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G I EI+G   +GK+ +  HT+A + +         G C +
Sbjct: 104 ITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQIC-HTLAVTCQLPIDMGGGEGKCLY 161

Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEI----TDMLVRSGAVDI 148
           +D E           A + G++    L N+  ++    +  L++     +M+  S    +
Sbjct: 162 IDTEGTFRPTRLLAVADRYGLNGEEVLDNVAYARAYNADHQLQLLGQAANMMAES-RFSL 220

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMK 206
           +++DS  +L  R +  G  GE    + AR M  A  LR L          +V  NQ+  +
Sbjct: 221 LIVDSATSLY-RTDFAG-RGE----LSARQMHLAKFLRTLQRLADEYGIAVVITNQVVAQ 274

Query: 207 I---GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           +     MF   P+   GGN +   S+ RL +R+
Sbjct: 275 VDGNASMFNPDPKKPIGGNIIAHSSTTRLSLRK 307


>gi|21231107|ref|NP_637024.1| hypothetical protein XCC1654 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768885|ref|YP_243647.1| hypothetical protein XC_2577 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21112741|gb|AAM40948.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574217|gb|AAY49627.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 513

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 3/89 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +++G+ GLD  L  GG P  R+  + G   SGKTTLAL  + +    G +C ++     L
Sbjct: 21  IATGTSGLDTILR-GGLPSNRLYLLEGQPGSGKTTLALQFLLEGAAKGESCLYITLSETL 79

Query: 108 DSI--YARKLGVDLKNLLISQPDTGEQAL 134
           D +   A+  G  L  L I +  + E  L
Sbjct: 80  DELQEVAQSHGWSLDALHIFELASAEAFL 108



 Score = 39.3 bits (90), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 76/177 (42%), Gaps = 25/177 (14%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + VSSG   +D  L  GG  +G    + GP  SGKT LAL  +A +   G  C   + + 
Sbjct: 262 DAVSSGVQEVDDLLH-GGPLRGTSTLLTGPAGSGKTNLALQYVAAACARGEHCCIFEFDE 320

Query: 106 ALDSIYAR--KLGVDLKNLL------ISQPDTGEQALEITDMLVRSGA----VDIIVIDS 153
              ++ AR   LG+DL+  L      + Q D  E +       VR+        ++VIDS
Sbjct: 321 RTGTLLARAESLGLDLRRHLESGLLELRQMDPAELSPGEFAWQVRASVEQRNCRLLVIDS 380

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +               S+P  + +LM Q + +L S +++S      IN     +G M
Sbjct: 381 LNGYL----------SSMP-QEKQLMLQ-MHELLSYLNQSGVTTFLINPQHGLVGTM 425


>gi|115394440|gb|ABI97152.1| Rad51 [Pneumocystis murina]
 gi|115394442|gb|ABI97153.1| Rad51 [Pneumocystis murina]
          Length = 343

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 94/213 (44%), Gaps = 34/213 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G I EI+G   +GK+ +  HT+A + +         G C +
Sbjct: 104 ITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQIC-HTLAVTCQLPIDMGGGEGKCLY 161

Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEI----TDMLVRSGAVDI 148
           +D E           A + G++    L N+  ++    +  L++     +M+  S    +
Sbjct: 162 IDTEGTFRPTRLLAVADRYGLNGEEVLDNVAYARAYNADHQLQLLGQAANMMAES-RFSL 220

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMK 206
           +++DS  +L  R +  G  GE    + AR M  A  LR L          +V  NQ+  +
Sbjct: 221 LIVDSATSLY-RTDFAG-RGE----LSARQMHLAKFLRTLQRLADEYGIAVVITNQVVAQ 274

Query: 207 I---GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           +     MF   P+   GGN +   S+ RL +R+
Sbjct: 275 VDGNASMFNPDPKKPIGGNIIAHSSTTRLSLRK 307


>gi|11498598|ref|NP_069826.1| DNA repair and recombination protein RadA [Archaeoglobus fulgidus
           DSM 4304]
 gi|3914552|sp|O29269|RADA_ARCFU RecName: Full=DNA repair and recombination protein radA
 gi|2649602|gb|AAB90248.1| DNA repair protein RAD51 (radA) [Archaeoglobus fulgidus DSM 4304]
          Length = 337

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 98/214 (45%), Gaps = 29/214 (13%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GT 97
           ++ +++GS  LD  LG GG     I E +G   SGKT +  H +A + +         G+
Sbjct: 87  VKKITTGSKDLDELLG-GGVETQAITEFFGEFGSGKTQIC-HQLAVNVQLPEDEGGLEGS 144

Query: 98  CAFVDAEHALDS----IYARKLGVD----LKNLLISQP-DTGEQAL------EITDMLVR 142
              +D E+          A   G+D    LKN+ ++Q  ++  Q L      E+ + L +
Sbjct: 145 VIIIDTENTFRPERIIQMAEAKGLDGNEVLKNIYVAQAYNSNHQMLLVDNAKELAEKLKK 204

Query: 143 SG-AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
            G  V +I++DS+ +   RAE  G    +L   Q +L ++ L  L          +V  N
Sbjct: 205 EGRPVRLIIVDSLMSHF-RAEYVGRG--TLADRQQKL-NRHLHDLMKFGELYNAAIVVTN 260

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           Q+  +  V+FG P    GG+ +   ++ R+ +++
Sbjct: 261 QVMARPDVLFGDPTKPVGGHIVAHTATFRIYLKK 294


>gi|297527309|ref|YP_003669333.1| putative circadian clock protein, KaiC [Staphylothermus hellenicus
           DSM 12710]
 gi|297256225|gb|ADI32434.1| putative circadian clock protein, KaiC [Staphylothermus hellenicus
           DSM 12710]
          Length = 280

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 3/79 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE + +G  GLD  L  GG P+G +V + G   +GKT   +H I +  +TG    +V  E
Sbjct: 6   IERLPTGIKGLDEILR-GGIPQGFVVAVVGEPGTGKTVFCIHFIGKGLETGDKGIYVTTE 64

Query: 105 HALDSIY--ARKLGVDLKN 121
            + +SI   A    +DL+ 
Sbjct: 65  ESRESIIRQAAMFNIDLRK 83


>gi|257077010|ref|ZP_05571371.1| DNA repair and recombination protein RadA [Ferroplasma acidarmanus
           fer1]
          Length = 335

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 92/205 (44%), Gaps = 22/205 (10%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS---QKTGGTCA---FV 101
           +S+G+ GLD  +G GG     I E +G   SGKT + L     +   ++ GG  +    +
Sbjct: 102 LSTGAQGLDNLIG-GGLETQSITEFFGEFGSGKTQIMLQLAVNATMPEEQGGLNSDVLII 160

Query: 102 DAEHA------LDSIYARKLGVD--LKNLLISQPDTGEQALEITDM---LVRSGAVDIIV 150
           D E+       +    A+ L  D  LK + +++       + + +    + +   + +++
Sbjct: 161 DTENTFRPERVIQMAKAKNLDPDETLKRIHVARAYNAHHQILLAEKASDIAKEFPIKLLI 220

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DS+ +   R+E    +G      + +L+++ +  L    +    ++   NQ+     V 
Sbjct: 221 VDSLTSHF-RSEY---VGRGSLAERQQLLNKHMHDLLKFGTIFNAVIAVTNQVSANPAVF 276

Query: 211 FGSPETTTGGNALKFYSSVRLDIRR 235
           FG P T  GGN +   ++ RL +R+
Sbjct: 277 FGDPMTPIGGNIVGHTATFRLYLRK 301


>gi|242085564|ref|XP_002443207.1| hypothetical protein SORBIDRAFT_08g015360 [Sorghum bicolor]
 gi|241943900|gb|EES17045.1| hypothetical protein SORBIDRAFT_08g015360 [Sorghum bicolor]
          Length = 342

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 93/221 (42%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G I EIYG   SGKT L  HT+  + +         G   +
Sbjct: 105 LTTGSRELDQILD-GGIETGSITEIYGEFRSGKTQLC-HTLCVTCQLPLDQGGGEGKALY 162

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +DAE                      L+++ YAR    D ++ L+         LE   M
Sbjct: 163 IDAEGTFRPERLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL---------LEAASM 213

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           +V +    ++V+DS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 214 MVET-RFALMVVDSATALY-RTDFSG-RGE----LSARQMHLAKFLRSLQKLADEFGVAV 266

Query: 198 VFINQMRMKI--GVMFGSPE-TTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++    +F  P+    GGN +   S+ RL +R+
Sbjct: 267 VITNQVVAQVDGAAVFAGPQIKPIGGNIMAHASTTRLFLRK 307


>gi|329766734|ref|ZP_08258277.1| RecA/RadA recombinase-like protein [Candidatus Nitrosoarchaeum
           limnia SFB1]
 gi|329136989|gb|EGG41282.1| RecA/RadA recombinase-like protein [Candidatus Nitrosoarchaeum
           limnia SFB1]
          Length = 219

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 84/199 (42%), Gaps = 18/199 (9%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA--- 103
           ++S+G   LD  L   G P G I +IYG   +GKT L       + K GGT  + D    
Sbjct: 1   MISTGLQKLDDFLS-DGIPNGVITDIYGASGTGKTQLLFQICVNTIKNGGTVLYQDTTGS 59

Query: 104 ---EHALDSIYARKLGVD-LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
              E  L+    + L  D L+ + IS+       ++  DM+  S    +I+ID++  L  
Sbjct: 60  FRPERILEIQKKQNLTFDILEKITISRITNTSDQIKSIDMM-NSSNFSLIIIDNITDLFS 118

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
               + D        +  L  + +  L+      K  ++  N +R   G+   + +T   
Sbjct: 119 YEYSKEDKTFE----KNSLFIRYIHNLSLVAINKKIPIIITNMIRNIDGIEIENMKT--- 171

Query: 220 GNALKFYSSVRLDIRRVGS 238
             A+  ++ +++ +R+  S
Sbjct: 172 --AVDLFTHIKIKLRKTNS 188


>gi|325917909|ref|ZP_08180082.1| RecA-superfamily ATPase possibly involved in signal transduction
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325535889|gb|EGD07712.1| RecA-superfamily ATPase possibly involved in signal transduction
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 504

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 3/89 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +++G+ GLD  L  GG P  R+  + G   SGKTTLAL  +      G +C +V     +
Sbjct: 12  ITTGTTGLDTILR-GGLPANRLYLLEGQPGSGKTTLALQFLLDGAAKGESCLYVTLSETI 70

Query: 108 DSI--YARKLGVDLKNLLISQPDTGEQAL 134
           D +   A   G  LK L I +  + E  L
Sbjct: 71  DELNEVAGSHGWSLKALHIFELASAEAFL 99



 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 27/178 (15%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + VSSG   +D AL  GG  +G    + GP  SGKT +AL  ++ + + G  C  +  + 
Sbjct: 253 DAVSSGVERID-ALLHGGPLRGTSTLLTGPAGSGKTNVALQYVSAACERGEHCCVLQFDE 311

Query: 106 ALDSIYAR--KLGVDLKNLLIS------QPD-----TGEQALEITDMLVRSGAVDIIVID 152
              ++  R   LG+DL+  L S      Q D      GE A  + +  V +    I+VID
Sbjct: 312 RTGTLLTRAEHLGMDLRKHLASGMLELHQMDPAELTPGEFAWAVRES-VEARNCRILVID 370

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           S+               S+P  + +LM Q + +L S +++S      IN     +G M
Sbjct: 371 SLNGYL----------SSMP-QEKQLMLQ-MHELLSYLNQSGVTTFLINPQHGLVGTM 416


>gi|191639267|ref|YP_001988433.1| DNA repair protein RadA [Lactobacillus casei BL23]
 gi|190713569|emb|CAQ67575.1| DNA repair protein RadA [Lactobacillus casei BL23]
 gi|327383348|gb|AEA54824.1| DNA repair protein RadA [Lactobacillus casei LC2W]
 gi|327386531|gb|AEA58005.1| DNA repair protein RadA [Lactobacillus casei BD-II]
          Length = 454

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 23/171 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V +G   L+  LG GG   G +V I G    GK+TL L    Q   TGGT  +V  E + 
Sbjct: 70  VKTGLDELNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSGQLADTGGTVLYVSGEESA 128

Query: 108 DSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
             I  R  +LGV    + +  P+T   ++E    ++     D +VIDSV  +        
Sbjct: 129 SQIKMRAGRLGVANSGMYL-YPETDMPSIE---DVINQMQPDYVVIDSVQTM-------- 176

Query: 166 DMGESLPGMQARLMSQA-LRKLTSS---ISRSKCILVFINQMRMKIGVMFG 212
               ++P M + + S A +R++T+    I++SK + +FI     K G + G
Sbjct: 177 ----NVPEMNSAVGSVAQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAG 223


>gi|194364808|ref|YP_002027418.1| Non-specific serine/threonine protein kinase [Stenotrophomonas
           maltophilia R551-3]
 gi|194347612|gb|ACF50735.1| Non-specific serine/threonine protein kinase [Stenotrophomonas
           maltophilia R551-3]
          Length = 498

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           +G  GLD  LG GG P+ R+  + GP  SGKTTL+L  + +  + G  C ++
Sbjct: 9   TGVEGLDSILG-GGLPQARLYLLEGPPGSGKTTLSLQFLLEGLRRGERCLYI 59


>gi|325120006|emb|CBZ55559.1| putative meiotic recombination protein DMC1-like protein [Neospora
           caninum Liverpool]
          Length = 349

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 103/237 (43%), Gaps = 40/237 (16%)

Query: 31  AIMQLGSQGSIFEGIEVV---------SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           A  +LG   +   G+E+V         ++GS  LD  LG GGF    I E++G    GKT
Sbjct: 86  AAAKLGMCNTFITGVELVQKRGRVIKITTGSDQLDQLLG-GGFETMSITELFGENRCGKT 144

Query: 82  TLALHTIA------QSQKTG-GTCAFVDAEHAL--DSI--YARKLGVD----LKNLLISQ 126
            +  HT+       +  K G G   ++D E     + I   A + G+D    L N++ ++
Sbjct: 145 QIC-HTVCVTAQLPRDMKGGCGKVCYIDTEGTFRPEKIQGIAERFGLDGDGVLDNIMYAR 203

Query: 127 PDTGE---QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL--MSQ 181
             T E   Q L I    +      ++++DS+ AL  R +  G  GE L   Q +L  M  
Sbjct: 204 AFTTEHMYQLLTIAAAKMCEERFSVLIVDSIIALF-RVDFSG-RGE-LADRQQKLNKMLS 260

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIG---VMFGSPETTTGGNALKFYSSVRLDIRR 235
            + KL    + +   ++  NQ+    G       +P    GG+ L   S+ RL +R+
Sbjct: 261 VMMKLAEQYNLA---VLLTNQVMSDPGGGLTFTANPTKPVGGHVLGHASTTRLSMRK 314


>gi|119719931|ref|YP_920426.1| Rad51-like [Thermofilum pendens Hrk 5]
 gi|119525051|gb|ABL78423.1| Rad51-like protein [Thermofilum pendens Hrk 5]
          Length = 315

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 115/256 (44%), Gaps = 37/256 (14%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +D+ + + +V  ++ L  A  +++ V G     QL  + S+  G++ +          L 
Sbjct: 47  IDFERALRLVRTARRL--AGWEVRAVRGDEYASQLSQRESLTTGVKALDE--------LL 96

Query: 61  IGGFPKGRIVEIYGPESSGKTTLA--LHTIAQSQKT----GGTCAFVDAEHALDSI---- 110
            GG     I E  G   SGKT L   L   AQ   +    GG   +VD E          
Sbjct: 97  EGGLVTQEIYEFAGEYGSGKTQLCHQLSVTAQLPPSRGGLGGKVVYVDTEGTFSPSRIER 156

Query: 111 YARKLGVD--LKNLLISQPDTGEQALEITDMLVR------SGAVDIIVIDSVAALTPRAE 162
            A + GV+  L+ + +++P + +   E+ +++++       G V ++VIDSV AL  RA+
Sbjct: 157 IAERFGVEGALEGVYVARPISVD---ELEELVIKGLKPLLKGGVKLVVIDSVIALY-RAQ 212

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG-SPETTTGGN 221
             G   E L   Q R+ + AL  L   ++R   I+V I    + +   +G + +   GGN
Sbjct: 213 FRGR--EWLAMRQQRI-NYALDWL-KRLARVYSIVVVITNQVVSVPSNWGVAVKLPAGGN 268

Query: 222 ALKFYSSVRLDIRRVG 237
            +   S+ R  +++ G
Sbjct: 269 IIAHASTHRFLMKKAG 284


>gi|161528894|ref|YP_001582720.1| DNA repair and recombination protein RadA [Nitrosopumilus maritimus
           SCM1]
 gi|160340195|gb|ABX13282.1| DNA repair and recombination protein RadA [Nitrosopumilus maritimus
           SCM1]
          Length = 388

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 92/209 (44%), Gaps = 26/209 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-QSQKTG------GTCAF 100
           +++G+  LD  L  GG     + E+YG    GKT  A HT++   QKT       G+  +
Sbjct: 88  ITTGTNCLD-TLFDGGLETQALTEVYGEFGCGKTQFA-HTMSVMVQKTKEEGGLEGSVLY 145

Query: 101 VDAEHALDS------IYARKLGVD--LKNLLISQP-DTGEQAL--EITDMLVRSGAVDII 149
           +D E+            A ++  +  L N+++++  ++  Q L  E    ++    + +I
Sbjct: 146 IDTENTFRPERIVSIAQAHEMDPEKVLDNIIVARAYNSAHQTLILEEAGPIIEENNIKLI 205

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS-KCILVFINQMRMKIG 208
           V DS   L  R+E  G    +L   Q +L       L S I+ +  C  +  NQ+     
Sbjct: 206 VADSAVGLF-RSEYLGRG--TLSNRQQKL--NHFVHLLSRIAETYNCAAIATNQVMASPD 260

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           V FG P    GGN +   S+ R+  ++ G
Sbjct: 261 VFFGDPTRPIGGNVVAHTSTYRIYFKKSG 289


>gi|307167464|gb|EFN61037.1| DNA repair protein RAD51-like protein 1 [Camponotus floridanus]
          Length = 340

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 93/223 (41%), Gaps = 48/223 (21%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGT 97
           I  V++GS  LD  LG GG   G I EI+G   SGK+ L  HT+A + +         G 
Sbjct: 99  IVYVTTGSKELDKLLG-GGIETGSITEIFGEFRSGKSQLC-HTLAVNCQLPICMGGAEGR 156

Query: 98  CAFVDAEHA--------------------LDSI-YARKLGVDLKNLLISQPDTGEQALEI 136
           C ++D E+                     LD++ YAR    D +  L+ Q          
Sbjct: 157 CLYIDTENTFRPERLVAVAERYKISGSSVLDNVAYARAYNTDHQTQLLVQASA------- 209

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
              ++      ++++DS  +L  R +  G  GE L   Q  L ++ LR L          
Sbjct: 210 ---MMTEARYALLIVDSATSLY-RTDYSG-RGE-LNARQIHL-ARFLRMLLRLADEHGIA 262

Query: 197 LVFINQMRMKI---GVMFGSPETTT-GGNALKFYSSVRLDIRR 235
           +V  NQ+  ++     MFG  +    GG+ L   S+ RL +R+
Sbjct: 263 VVITNQVVAQVDGAASMFGGDQKKPIGGHILAHSSTTRLYLRK 305


>gi|307297210|ref|ZP_07577020.1| putative circadian clock protein, KaiC [Sphingobium
           chlorophenolicum L-1]
 gi|306877357|gb|EFN08590.1| putative circadian clock protein, KaiC [Sphingobium
           chlorophenolicum L-1]
          Length = 498

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 27/176 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V+SG   LD  LG GG  +G  + I GP  +GKTT+AL  +  + + G  C   + +  +
Sbjct: 250 VTSGVGALDDLLG-GGPLRGSSILITGPAGTGKTTIALQYLHAACERGEPCTIFEFDERI 308

Query: 108 DSIY--ARKLGVDLKN------LLISQPD-----TGEQALEITDMLVRSGAVDIIVIDSV 154
            ++   A+  G+D+ +      L+I Q D      GE A  +    V S  V +I IDS 
Sbjct: 309 GTLLTRAKAFGLDVAHQIDQGRLVIQQIDPAEISPGEFAARVRHE-VESRGVRMIAIDS- 366

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
                   + G M  ++P  Q  L+   + +L S +S+   +   +N  +  +G M
Sbjct: 367 --------LNGYMA-AMPQEQQLLLQ--MHELLSYLSQQGVVTFLLNPQQGLVGSM 411


>gi|238013132|gb|ACR37601.1| unknown [Zea mays]
          Length = 298

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 2/68 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCA 99
           + E   V+ +G  G+D  LG GG  +G++ E+ GP SSGKT + LH+ + +  K  G   
Sbjct: 55  VTENKHVLPTGLEGIDRLLG-GGLRQGQLTEVTGPSSSGKTQVCLHSASHAPVKHTGVVM 113

Query: 100 FVDAEHAL 107
           ++D  ++ 
Sbjct: 114 YLDTSNSF 121


>gi|328474633|gb|EGF45438.1| hypothetical protein VP10329_18060 [Vibrio parahaemolyticus 10329]
          Length = 230

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 2/103 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSG   LD  LG GGFP   +VE+    S G+  L L    ++  + G  AF+     ++
Sbjct: 30  SSGFAELDELLG-GGFPSHGVVEMESVGSIGELRL-LAPYLKASLSRGVTAFIQPPALMN 87

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           S++   +G+D+  + I  P     AL   +  ++SG    +++
Sbjct: 88  SLFLHNIGLDINQVWIVSPTHHRDALWAAEQCLKSGVCANVLL 130


>gi|169806553|ref|XP_001828021.1| DNA repair and recombination protein RAD51 [Enterocytozoon bieneusi
           H348]
 gi|161779161|gb|EDQ31186.1| DNA repair and recombination protein RAD51 [Enterocytozoon bieneusi
           H348]
          Length = 337

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 96/215 (44%), Gaps = 38/215 (17%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  LD  L  GG   G I E++G   +GK+ L  HT+A + +         G C +
Sbjct: 99  ITTGSTELDKLLN-GGIESGTITEVFGEFRTGKSQLC-HTVAVTCQLPKENGGGNGKCMY 156

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------ 146
           +D E    +      A +LG+D    L N+  ++    +      ++L+ + A+      
Sbjct: 157 IDTEGTFRTERLIPIAERLGLDPNEVLDNISYARAFNSDHQ---NNLLIHASAMMSETKY 213

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMR 204
            ++++DS  +L  R +  G  GE    + AR +S A  LR LT+        ++  NQ+ 
Sbjct: 214 AVLIVDSATSLY-RTDYNG-RGE----LSARQISLARFLRSLTNLAETYGIAVIITNQVV 267

Query: 205 MK----IGVMFGSPETTTGGNALKFYSSVRLDIRR 235
                 + V  G  +   GG+ +   S+ RL  R+
Sbjct: 268 ANVDGAVAVFGGDVKKPIGGHIIAHASNTRLYFRK 302


>gi|321474080|gb|EFX85046.1| putative RAD51D [Daphnia pulex]
          Length = 226

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 21/30 (70%)

Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
          GG P GR+VE+YG   SGKT LALH  A +
Sbjct: 4  GGIPSGRLVEVYGDSGSGKTQLALHLTANT 33


>gi|153834870|ref|ZP_01987537.1| RecA/RadA recombinase [Vibrio harveyi HY01]
 gi|148868688|gb|EDL67767.1| RecA/RadA recombinase [Vibrio harveyi HY01]
          Length = 230

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 2/103 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSG   LD  LG GGFP   +VE+    S G+  L L    ++  + G  AF+     ++
Sbjct: 30  SSGFPELDALLG-GGFPPHGVVEMESVGSIGELRL-LAPYLEASLSRGVTAFIQPPALMN 87

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           S++   +G+D+  + +  P+    AL   +  ++SG    +++
Sbjct: 88  SLFLHSIGLDINQVWVITPEHQRDALWAAEQCLKSGVCTNVLL 130


>gi|78047263|ref|YP_363438.1| RecA/DnaB superfamily regulatory protein [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|78035693|emb|CAJ23384.1| putative RecA/DnaB superfamily regulatory protein [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 499

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +++GS GLD  L  GG P  R+  + G   +GKTTLAL  +  +   G +C +V     +
Sbjct: 6   ITTGSTGLDTILR-GGLPANRLYLLEGQPGAGKTTLALQFLLDAAAKGESCLYVTLSETI 64

Query: 108 DSI 110
           D +
Sbjct: 65  DEL 67


>gi|213406265|ref|XP_002173904.1| recombinational DNA repair protein Rhp55p [Schizosaccharomyces
           japonicus yFS275]
 gi|212001951|gb|EEB07611.1| recombinational DNA repair protein Rhp55p [Schizosaccharomyces
           japonicus yFS275]
          Length = 366

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 4/73 (5%)

Query: 34  QLGSQGSI--FEGIEV--VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           +L +Q +I  FE       S  S  LD A G  G  +G+I EI GP  SGKTTLAL+  A
Sbjct: 8   RLATQPAIRAFEAFRAPGFSFNSNNLDNAFGGTGLKRGQISEICGPSGSGKTTLALNVAA 67

Query: 90  QSQKTGGTCAFVD 102
            +   G    +++
Sbjct: 68  SALSAGYKVIWIE 80


>gi|67904210|ref|XP_682361.1| hypothetical protein AN9092.2 [Aspergillus nidulans FGSC A4]
 gi|40742735|gb|EAA61925.1| hypothetical protein AN9092.2 [Aspergillus nidulans FGSC A4]
 gi|259485496|tpe|CBF82567.1| TPA: meiotic recombination protein (Dmc1), putative
           (AFU_orthologue; AFUA_7G02200) [Aspergillus nidulans
           FGSC A4]
          Length = 658

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 97/222 (43%), Gaps = 34/222 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQK----TGGTCAF 100
           +S+GS   D  LG GGF    I E++G    GKT L+ HT   +AQ  K      G  A+
Sbjct: 98  ISTGSKQFDSILG-GGFQSMSISEVFGEFRCGKTQLS-HTMSVVAQLPKDMGGAEGKVAY 155

Query: 101 VDAEHALDS----IYARKLGVDL----KNLLISQPDTGEQALEITDMLVRS---GAVDII 149
           +D E           A + GVD     +N+  ++    E  LE+ + L +    G   ++
Sbjct: 156 IDTEGTFRPERIGQIAERFGVDPDSAKENIAYARALNSEHQLELLNTLSKEFVGGEYRLL 215

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           +IDS+     R +  G  GE L   Q +L +Q L KL          ++  NQ++   G 
Sbjct: 216 IIDSIMNCF-RVDFCG-RGE-LADRQQKL-NQFLMKLAHMAEEFNVCVLMTNQVQSDPGA 271

Query: 209 -VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241
             +F   +     GG+ L   S+ R+ +R      RV  I+D
Sbjct: 272 SALFSGADGRKPVGGHVLAHASTTRVLLRKGRGEERVAKIQD 313


>gi|20091275|ref|NP_617350.1| hypothetical protein MA2444 [Methanosarcina acetivorans C2A]
 gi|19916398|gb|AAM05830.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 240

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 44/93 (47%), Gaps = 3/93 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VS+G   LD  L IGG+P  + + I G   SGKT   +H I +S   G  C  +  E
Sbjct: 1   MERVSTGIEELDRKL-IGGYPVNKAILITGVAGSGKTIFGIHFIYRSCVEGRKCLMIATE 59

Query: 105 HALDSIY--ARKLGVDLKNLLISQPDTGEQALE 135
              + I   A+ LG DLK    S   T E   E
Sbjct: 60  ETPEDILYQAQMLGHDLKPYYESGQLTIENIFE 92


>gi|221102981|ref|XP_002169171.1| PREDICTED: similar to DNA repair protein RAD51 homolog A [Hydra
           magnipapillata]
          Length = 336

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 87/210 (41%), Gaps = 29/210 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +SSGS  LD  L  GGF  G I EI+G   +GKT L        Q         G   +V
Sbjct: 99  ISSGSKELDKLLQ-GGFETGSITEIFGEFRTGKTQLCHQLCVTCQLPVDCGGAEGKAMYV 157

Query: 102 DAEHALDS----IYARKLGVD----LKNLLISQP---DTGEQALEITDMLVRSGAVDIIV 150
           D E           A + G++    L N+  ++    D   Q L     ++      +++
Sbjct: 158 DTEGTFRPERCLAVAERYGLNGQEVLDNVAYARAYNSDHQTQLLIHASAMMSEARYALLI 217

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMKI- 207
           +DS  AL  R +  G  GE    + AR M  A  LR L          +V  NQ+  ++ 
Sbjct: 218 VDSATALY-RTDYSG-RGE----LSARQMHLARFLRTLLRLADEFGVAVVITNQVVAQVD 271

Query: 208 -GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
              MF + P+   GGN +   S+ RL +R+
Sbjct: 272 GASMFQTDPKKPIGGNIMAHASTTRLSLRK 301


>gi|225559662|gb|EEH07944.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
 gi|325089671|gb|EGC42981.1| uvsC [Ajellomyces capsulatus H88]
          Length = 348

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 95/222 (42%), Gaps = 49/222 (22%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  L  GG   G I EI+G   +GK+ +  HT+A + +         G C 
Sbjct: 102 CITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCL 159

Query: 100 FVDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITD 138
           ++D E                      LD+I YAR    D +  L++Q          + 
Sbjct: 160 YIDTEGTFRPTRLLAVAQRYGLVGDEVLDNIAYARAYNSDHQLQLLNQ---------ASQ 210

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           M+  +    ++++DS  AL  R +  G  GE L   Q  L ++ +RKL +        +V
Sbjct: 211 MMCET-RFSLLIVDSATALY-RTDFSG-RGE-LSSRQNHL-AKFMRKLRTLADEFGIAVV 265

Query: 199 FINQMRMKI----GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
             NQ+  ++      MF   P+   GGN +   S+ RL +++
Sbjct: 266 ITNQVVAQVDGGPSAMFNPDPKKPIGGNIIAHASTTRLSLKK 307


>gi|169830871|ref|YP_001716853.1| putative circadian clock protein, KaiC [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637715|gb|ACA59221.1| putative circadian clock protein, KaiC [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 467

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 53/115 (46%), Gaps = 15/115 (13%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           G  GLD  L  GG  +G I  I G   +GKT LAL  +    + G    F+  E  ++ +
Sbjct: 242 GITGLDEML-CGGLTEGTITLISGGTGTGKTALALKFLLDGAEKGEKGLFLSFEQPVNQL 300

Query: 111 Y--ARKLG-----------VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
              AR+LG           +D+K +   + D  + A EI DM VR   VD  VID
Sbjct: 301 QDTARRLGWEIDRYLAEGRLDIKFISPIELDVDKHAFEILDM-VREKKVDRFVID 354


>gi|153005063|ref|YP_001379388.1| hypothetical protein Anae109_2202 [Anaeromyxobacter sp. Fw109-5]
 gi|152028636|gb|ABS26404.1| conserved hypothetical protein [Anaeromyxobacter sp. Fw109-5]
          Length = 246

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 57/125 (45%), Gaps = 12/125 (9%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           V++ G   +D  L  GGF +G + E+ G  +SGKT +AL   A         A+VD    
Sbjct: 31  VLACGRAEIDTLLPDGGFRRGALTELAGGPASGKTAIALALFAALGPG-ALAAYVDGRGE 89

Query: 107 LDSIYARKLGVDLKNLLISQP-----------DTGEQALEITDMLVRSGAVDIIVIDSVA 155
           L    A  LGV+L  LL+ +P           D    AL   + L+ SGA D + ID   
Sbjct: 90  LYPPAAAALGVELSRLLVVRPPPRAHGGGPERDPALVALWAAEALLGSGAFDAVAIDVPM 149

Query: 156 ALTPR 160
           A T R
Sbjct: 150 ARTVR 154


>gi|157112162|ref|XP_001657421.1| DNA repair protein rad51 [Aedes aegypti]
 gi|108878168|gb|EAT42393.1| DNA repair protein rad51 [Aedes aegypti]
          Length = 341

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 94/219 (42%), Gaps = 47/219 (21%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA------QSQKTG-GTCAF 100
           +++GS  LD  LG GG   G I E++G   +GKT +  HT+A       SQ  G G C +
Sbjct: 104 LTTGSKELDKLLG-GGIETGSITELFGEFRTGKTQIC-HTLAVTCQLPVSQNGGEGKCLY 161

Query: 101 VDAE--------------------HALDS-IYARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E                      LD+ +YAR    D +  L+ Q            M
Sbjct: 162 IDTEGTFRPERLLAVAERYKLVGTDVLDNVVYARAFNSDHQMKLLVQASA---------M 212

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           +V S    ++++DS  AL  R +  G  GE L   Q +L  + LR L          +V 
Sbjct: 213 MVES-RYALLIVDSATALF-RTDYSG-RGE-LNARQVQL-GKFLRMLLRLADEFGVAVVI 267

Query: 200 INQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
            NQ+  ++    MF   P+   GG+ L   S+ RL +R+
Sbjct: 268 TNQVVAQVDAAAMFTPDPKKPIGGHILAHASTTRLYLRK 306


>gi|156975139|ref|YP_001446046.1| hypothetical protein VIBHAR_02866 [Vibrio harveyi ATCC BAA-1116]
 gi|156526733|gb|ABU71819.1| hypothetical protein VIBHAR_02866 [Vibrio harveyi ATCC BAA-1116]
          Length = 230

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 2/103 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSG   LD  LG GGFP   +VE+    S G+  L L    ++  + G  AF+     ++
Sbjct: 30  SSGFPELDALLG-GGFPPHGVVEMESVGSIGELRL-LAPYLEASLSRGVTAFIQPPALIN 87

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           S++   +G+D+  + +  P+    AL   +  ++SG    +++
Sbjct: 88  SLFLHSIGLDINQVWVITPEHQRDALWAAEQCLKSGVCTNVLL 130


>gi|154151968|ref|YP_001405586.1| DNA repair and recombination protein RadB [Candidatus Methanoregula
           boonei 6A8]
 gi|154000520|gb|ABS56943.1| DNA repair and recombination protein RadB [Methanoregula boonei
           6A8]
          Length = 226

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 9/123 (7%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           ++G+  LD  LG GG     I ++YG  +SGK+TL +       + GG+  F+D+E    
Sbjct: 8   TTGNAALDRLLG-GGLEPRTITQLYGGPASGKSTLCMIASVSCLRAGGSVIFIDSEGFSI 66

Query: 109 SIYARKLGVDLK----NLLISQP-DTGEQALEIT--DMLVRSGAVDIIVIDSVAALTPRA 161
             + +  G D       L + +P D  +Q   IT  D + R     ++V+DS  AL  R 
Sbjct: 67  ERFRQIAGNDTAAIADRLFLFEPVDFDQQGGMITESDKIFRQHKPGLVVLDSATALY-RT 125

Query: 162 EIE 164
           ++E
Sbjct: 126 DLE 128


>gi|169781702|ref|XP_001825314.1| DNA repair protein rhp51 [Aspergillus oryzae RIB40]
 gi|238498508|ref|XP_002380489.1| DNA repair protein RAD51, putative [Aspergillus flavus NRRL3357]
 gi|83774056|dbj|BAE64181.1| unnamed protein product [Aspergillus oryzae]
 gi|220693763|gb|EED50108.1| DNA repair protein RAD51, putative [Aspergillus flavus NRRL3357]
          Length = 348

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 105/244 (43%), Gaps = 35/244 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  LG GG   G I EI+G   +GK+ +  HT+A + +         G C +
Sbjct: 103 ITTGSKQLDTLLG-GGIETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 160

Query: 101 VDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDII 149
           +D E     +     A++ G+     L N+  ++    +  L++ +    ++      ++
Sbjct: 161 IDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 220

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           V+DS  AL  R +  G  GE L   Q  L ++ +R L          +V  NQ+  ++  
Sbjct: 221 VVDSATALY-RTDFNG-RGE-LSTRQTHL-AKFMRTLQRLADEFGIAVVITNQVVAQVDG 276

Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               MF   P+   GGN +   S+ RL ++      RV  I D   +  +     + ++ 
Sbjct: 277 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRVCKIYDSPCLPESDCLFAINEDG 336

Query: 259 MASP 262
           +  P
Sbjct: 337 IGDP 340


>gi|255522446|ref|ZP_05389683.1| recombinase A [Listeria monocytogenes FSL J1-175]
          Length = 61

 Score = 42.0 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 28/36 (77%)

Query: 298 WFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           W+S+K +R+GQGREN+K +L+E+ +I + I   +R+
Sbjct: 1   WYSYKEERIGQGRENAKQYLKEHTDIRDEISKRVRE 36


>gi|114320254|ref|YP_741937.1| hypothetical protein Mlg_1095 [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226648|gb|ABI56447.1| conserved hypothetical protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 290

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 1/104 (0%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESS-GKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           +++G   L+  L  GG+P G + EI    +  G+  L L  +A+  + G     +   + 
Sbjct: 47  LATGFPALEAVLPGGGWPAGALTEILHDRTGVGELRLVLPALARLSRAGRWVVLIAPPNL 106

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
             +      GVDL++LL+  P T ++ L   +  +RSG    ++
Sbjct: 107 PYAPALAAAGVDLRHLLLVHPRTDQEGLWAVEQALRSGTCSAVL 150


>gi|871832|dbj|BAA08255.1| recA-like protein [Arabidopsis thaliana]
          Length = 342

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 26/208 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++G   LD  LG GG     I E +G   SGKT LA HT+  + +         G  A+
Sbjct: 108 ITTGCQALDDLLG-GGIETSAITEAFGEFRSGKTQLA-HTLCVTTQLPTNMKGGNGKVAY 165

Query: 101 VDAEHAL--DSIY--ARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149
           +D E     D I   A + G+D    L N++ ++  T E    +   L    + +   I+
Sbjct: 166 IDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRIL 225

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           ++DS+ AL  R +  G  GE L   Q +L +Q L +L          +   NQ+      
Sbjct: 226 IVDSIIALF-RVDFTGR-GE-LADRQQKL-AQMLSRLIKIAEEFNVAVYMTNQVIADPGG 281

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
           G+    P+   GG+ L   +++RL  R+
Sbjct: 282 GMFISDPKKPAGGHVLAHAATIRLLFRK 309


>gi|295669710|ref|XP_002795403.1| DNA repair protein RAD51 [Paracoccidioides brasiliensis Pb01]
 gi|226285337|gb|EEH40903.1| DNA repair protein RAD51 [Paracoccidioides brasiliensis Pb01]
          Length = 348

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 95/224 (42%), Gaps = 53/224 (23%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  L  GG   G I EI+G   +GK+ +  HT+A + +         G C 
Sbjct: 102 CITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCL 159

Query: 100 FVDA--------------------EHALDSI-YARKLGVDLKNLLISQPDTGEQALEITD 138
           F+D                     E  LD+I YAR    D +  L++Q          + 
Sbjct: 160 FIDTEGTFRPTRLLSVAQRYGLAGEEVLDNIAYARAYNSDHQLQLLNQ---------ASQ 210

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS--QALRKLTSSISRSKCI 196
           M+  +    ++++DS  AL  R +  G  GE L   Q  L    +ALR+L      +   
Sbjct: 211 MMCET-RFSLLIVDSATALY-RTDFSG-RGE-LSNRQIHLAKFMRALRRLADEFGIA--- 263

Query: 197 LVFINQMRMKI----GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           +V  NQ+  ++      MF   P+   GGN +   S+ RL +++
Sbjct: 264 VVITNQVVAQVDGGPSAMFNPDPKKPIGGNIIAHASTTRLSLKK 307


>gi|167042704|gb|ABZ07424.1| putative recA bacterial DNA recombination protein [uncultured
           marine crenarchaeote HF4000_ANIW133O4]
          Length = 367

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 78/186 (41%), Gaps = 21/186 (11%)

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTG------GTCAFVDAEHALDS----IYARKLGVD 118
           + E+YG   SGKT          QK        GT  ++D E+          A+  G+D
Sbjct: 107 LTEVYGEFGSGKTQFCHTMCVTVQKPKEEGGLEGTVLYIDTENTFRPERIVSIAKIHGMD 166

Query: 119 ----LKNLLISQP-DTGEQAL--EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
               L  +++++  ++  Q L  E    +++   V ++++DS   L  RAE    +G   
Sbjct: 167 PEKVLDRIIVARAYNSAHQTLILEEASQMIKENNVKLLIVDSAVGLF-RAEY---LGRGT 222

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
             ++ + +++ +  L        C  +  NQ+     V FG P    GGN +   S+ R+
Sbjct: 223 LAIRQQRLNKFVHLLVRIAEVYNCAALATNQVMASPDVFFGDPTRPIGGNVVAHTSTYRI 282

Query: 232 DIRRVG 237
             ++ G
Sbjct: 283 YFKKSG 288


>gi|115491377|ref|XP_001210316.1| DNA repair protein RAD51 [Aspergillus terreus NIH2624]
 gi|114197176|gb|EAU38876.1| DNA repair protein RAD51 [Aspergillus terreus NIH2624]
          Length = 348

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 105/244 (43%), Gaps = 35/244 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  LG GG   G I EI+G   +GK+ +  HT+A + +         G C +
Sbjct: 103 ITTGSKQLDTLLG-GGIETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 160

Query: 101 VDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDII 149
           +D E     +     A++ G+     L N+  ++    +  L++ +    ++      ++
Sbjct: 161 IDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 220

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           V+DS  +L  R +  G  GE L   Q  L ++ LR L          +V  NQ+  ++  
Sbjct: 221 VVDSATSLY-RTDFNG-RGE-LSSRQTHL-AKFLRTLQRLADEFGIAVVITNQVVAQVDG 276

Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               MF   P+   GGN +   S+ RL ++      RV  I D   +  +     + ++ 
Sbjct: 277 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRVCKIYDSPCLPESDCLFAINEDG 336

Query: 259 MASP 262
           +  P
Sbjct: 337 IGDP 340


>gi|28898808|ref|NP_798413.1| hypothetical protein VP2034 [Vibrio parahaemolyticus RIMD 2210633]
 gi|153838845|ref|ZP_01991512.1| RecA/RadA recombinase [Vibrio parahaemolyticus AQ3810]
 gi|260365608|ref|ZP_05778135.1| RecA/RadA recombinase [Vibrio parahaemolyticus K5030]
 gi|260879150|ref|ZP_05891505.1| RecA/RadA recombinase [Vibrio parahaemolyticus AN-5034]
 gi|260898465|ref|ZP_05906961.1| RecA/RadA recombinase [Vibrio parahaemolyticus Peru-466]
 gi|260899601|ref|ZP_05907996.1| RecA/RadA recombinase [Vibrio parahaemolyticus AQ4037]
 gi|28807027|dbj|BAC60297.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747729|gb|EDM58629.1| RecA/RadA recombinase [Vibrio parahaemolyticus AQ3810]
 gi|308089024|gb|EFO38719.1| RecA/RadA recombinase [Vibrio parahaemolyticus Peru-466]
 gi|308093554|gb|EFO43249.1| RecA/RadA recombinase [Vibrio parahaemolyticus AN-5034]
 gi|308106901|gb|EFO44441.1| RecA/RadA recombinase [Vibrio parahaemolyticus AQ4037]
 gi|308114683|gb|EFO52223.1| RecA/RadA recombinase [Vibrio parahaemolyticus K5030]
          Length = 230

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 2/103 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSG   LD  LG GGFP   +VE+    S G+  L L    ++  + G  AF+     ++
Sbjct: 30  SSGFAELDELLG-GGFPSHGVVEMESVGSIGELRL-LAPYLKASLSRGVTAFIQPPALMN 87

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           S++   +G+D+  + I  P     AL   +  ++SG    +++
Sbjct: 88  SLFLHNIGLDINQVWIVSPTHHRDALWAAEQCLKSGVCANVLL 130


>gi|30686826|ref|NP_188928.2| DMC1 (DISRUPTION OF MEIOTIC CONTROL 1); ATP binding / DNA binding /
           DNA-dependent ATPase/ damaged DNA binding /
           nucleoside-triphosphatase/ nucleotide binding / protein
           binding [Arabidopsis thaliana]
 gi|21903409|sp|Q39009|DMC1_ARATH RecName: Full=Meiotic recombination protein DMC1 homolog
 gi|1790922|gb|AAC49617.1| AtDMC1 [Arabidopsis thaliana]
 gi|66792672|gb|AAY56438.1| At3g22880 [Arabidopsis thaliana]
          Length = 344

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 26/208 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++G   LD  LG GG     I E +G   SGKT LA HT+  + +         G  A+
Sbjct: 108 ITTGCQALDDLLG-GGIETSAITEAFGEFRSGKTQLA-HTLCVTTQLPTNMKGGNGKVAY 165

Query: 101 VDAEHAL--DSIY--ARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149
           +D E     D I   A + G+D    L N++ ++  T E    +   L    + +   I+
Sbjct: 166 IDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRIL 225

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           ++DS+ AL  R +  G  GE L   Q +L +Q L +L          +   NQ+      
Sbjct: 226 IVDSIIALF-RVDFTG-RGE-LADRQQKL-AQMLSRLIKIAEEFNVAVYMTNQVIADPGG 281

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
           G+    P+   GG+ L   +++RL  R+
Sbjct: 282 GMFISDPKKPAGGHVLAHAATIRLLFRK 309


>gi|11994717|dbj|BAB03033.1| AtDMC1 (meiotic recombination protein)-like protein [Arabidopsis
           thaliana]
          Length = 332

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 26/208 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++G   LD  LG GG     I E +G   SGKT LA HT+  + +         G  A+
Sbjct: 96  ITTGCQALDDLLG-GGIETSAITEAFGEFRSGKTQLA-HTLCVTTQLPTNMKGGNGKVAY 153

Query: 101 VDAEHAL--DSIY--ARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149
           +D E     D I   A + G+D    L N++ ++  T E    +   L    + +   I+
Sbjct: 154 IDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRIL 213

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           ++DS+ AL  R +  G  GE L   Q +L +Q L +L          +   NQ+      
Sbjct: 214 IVDSIIALF-RVDFTG-RGE-LADRQQKL-AQMLSRLIKIAEEFNVAVYMTNQVIADPGG 269

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
           G+    P+   GG+ L   +++RL  R+
Sbjct: 270 GMFISDPKKPAGGHVLAHAATIRLLFRK 297


>gi|315041895|ref|XP_003170324.1| hypothetical protein MGYG_07566 [Arthroderma gypseum CBS 118893]
 gi|311345358|gb|EFR04561.1| hypothetical protein MGYG_07566 [Arthroderma gypseum CBS 118893]
          Length = 493

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 13/110 (11%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARKLGVD- 118
           + G  +G I E+ GP  SGKT+LA+ T   + K G +  ++D    +  S + + L  D 
Sbjct: 109 LPGIRRGEITELSGPRGSGKTSLAMTTAVNALKRGESVVWIDTAGPICMSRFEKMLLKDS 168

Query: 119 --------LKNLLISQPDTGEQALEITDMLVR---SGAVDIIVIDSVAAL 157
                   L+NLL  QP T    L +T   +         +IV+DS++ L
Sbjct: 169 TPSEVQDLLQNLLHLQPTTLAHLLALTSYPMSDFPPPNTGLIVLDSISCL 218


>gi|225682824|gb|EEH21108.1| DNA repair protein RAD51 [Paracoccidioides brasiliensis Pb03]
 gi|226290270|gb|EEH45754.1| DNA repair protein RAD51 [Paracoccidioides brasiliensis Pb18]
          Length = 348

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 96/214 (44%), Gaps = 33/214 (15%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  L  GG   G I EI+G   +GK+ +  HT+A + +         G C 
Sbjct: 102 CITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCL 159

Query: 100 FVDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDI 148
           ++D E     I     A++ G+     L N+  ++    +  L++ +    ++      +
Sbjct: 160 YIDTEGTFRPIRLLSVAQRYGLVGEEVLDNIAYARAYNSDHQLQLLNQASQMMCETRFSL 219

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARL--MSQALRKLTSSISRSKCILVFINQMRMK 206
           +++DS  AL  R +  G  GE L   Q  L    +ALR+L      +   +V  NQ+  +
Sbjct: 220 LIVDSATALY-RTDFSG-RGE-LSNRQIHLAKFMRALRRLADEFGIA---VVITNQVVAQ 273

Query: 207 I----GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           +      MF   P+   GGN +   S+ RL +++
Sbjct: 274 VDGGPSAMFNPDPKKPIGGNIIAHASTTRLSLKK 307


>gi|303257179|ref|ZP_07343193.1| DNA repair protein RadA [Burkholderiales bacterium 1_1_47]
 gi|302860670|gb|EFL83747.1| DNA repair protein RadA [Burkholderiales bacterium 1_1_47]
          Length = 448

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 9/106 (8%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD--SIYA 112
           L+ ALG GGF  G +V I G    GK+TL L  + +    G  C +   E +    ++ A
Sbjct: 59  LERALG-GGFVPGSVVLIGGDPGIGKSTLLLQAMCKMVALGQVCLYASGEESPTQVALRA 117

Query: 113 RKLGVDLKNL-LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           ++LGV+ K L  IS     E  LE  + ++   +   +VIDS+  L
Sbjct: 118 QRLGVNTKGLKFIS-----EIQLEKIEAIIEETSPQWVVIDSIQTL 158


>gi|115610811|ref|XP_788683.2| PREDICTED: similar to rad51 [Strongylocentrotus purpuratus]
 gi|115941481|ref|XP_001181485.1| PREDICTED: similar to rad51 [Strongylocentrotus purpuratus]
          Length = 335

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 94/219 (42%), Gaps = 47/219 (21%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           V++GS  LD  L  GG   G I EI+G   +GKT L  HT+A + +         G C +
Sbjct: 98  VTTGSKELDKLLQ-GGIETGSITEIFGEFRTGKTQLC-HTMAVTCQLPIDNGGGEGKCLY 155

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E                      LD++ YAR    D ++ L+         L+ + M
Sbjct: 156 IDTEGTFRPERLIAVADRYNLSGSDVLDNVAYARAHNSDHQSQLL---------LQASAM 206

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           +  S    ++++DS  AL  R +  G  GE L   Q  L  + LR L          +V 
Sbjct: 207 MAES-RYALLIVDSATALY-RTDYSG-RGE-LASRQMHL-GRFLRTLLRLADEYGVAVVI 261

Query: 200 INQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
            NQ+  ++    MF S P+   GG+ +   S+ RL +R+
Sbjct: 262 TNQVVAQVDGAAMFTSDPKKPIGGHIMAHASTTRLYLRK 300


>gi|88604173|ref|YP_504351.1| DNA repair and recombination protein RadA [Methanospirillum
           hungatei JF-1]
 gi|88189635|gb|ABD42632.1| DNA repair and recombination protein RadA [Methanospirillum
           hungatei JF-1]
          Length = 407

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 93/207 (44%), Gaps = 32/207 (15%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAFVDAEHAL 107
           +D  LG GGF    I E+YG   SGK+ + +H +A + +         G+  +VD E+  
Sbjct: 174 VDELLG-GGFETQAITEMYGEFGSGKSQI-VHQMAVNVQLPEELGGLNGSVIYVDTENTF 231

Query: 108 DSIYARKL-------GVD----LKNLLISQPDTGEQAL-------EITDMLVRSG-AVDI 148
                 ++       G D    LKN+ +++  T +  +       E+ + L  +G  V +
Sbjct: 232 RPERIEQMVKGLEIEGADPQEFLKNIHVARAQTSDHQMLLIETSRELAEELKAAGKPVKL 291

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +++DS+  L  R+E  G    +L   Q +L ++ +  +         I +  NQ++    
Sbjct: 292 VIVDSLTGLF-RSEYAGRG--TLAERQQKL-NRHMHDIFKLCDEYNAIGLVTNQVQSNPA 347

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRR 235
           V FG P    GGN +   ++ R+ +R+
Sbjct: 348 VFFGDPTKPIGGNIVGHTATFRVYLRK 374


>gi|163783503|ref|ZP_02178494.1| ATP-dependent protease sms [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881267|gb|EDP74780.1| ATP-dependent protease sms [Hydrogenivirga sp. 128-5-R1-1]
          Length = 444

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 15/146 (10%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIF-------EGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           S ++ +  +G I+++ +Q  +        +  E  S+G   LD+ALG GG   G++V I 
Sbjct: 32  SFVEELVERGKILRVSTQAKVLSIDSWDEDSGERRSTGFENLDVALG-GGLVPGQVVLIA 90

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA--RKLGVDLKNLLISQPDTGE 131
           G    GK+TL L  +++     G   +V  E +   I    R+LG+  + +L+      E
Sbjct: 91  GEPGIGKSTLLLQ-VSERYTRYGKVLYVSGEESGSQIAVRGRRLGISSQKILLYPETLFE 149

Query: 132 QALEITDMLVRSGAVDIIVIDSVAAL 157
             LE+ +    S    ++VIDS+  L
Sbjct: 150 NVLEVLEQEEPS----LLVIDSIQTL 171


>gi|16125906|ref|NP_420470.1| DNA repair protein RadA [Caulobacter crescentus CB15]
 gi|221234669|ref|YP_002517105.1| DNA repair protein RadA [Caulobacter crescentus NA1000]
 gi|13423066|gb|AAK23638.1| DNA repair protein RadA [Caulobacter crescentus CB15]
 gi|220963841|gb|ACL95197.1| DNA repair protein RadA [Caulobacter crescentus NA1000]
          Length = 460

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 16/131 (12%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR--KLGVDL 119
           GG   G  + I G    GK+TL L   A +   G +CA++  E A++ I  R  ++G+  
Sbjct: 84  GGVVPGSALLIGGDPGVGKSTLLLQVCASAAARGVSCAYISGEEAVEQIRGRADRMGLAK 143

Query: 120 KNLLISQPDTGEQAL-EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG--MQA 176
            N+ ++     E AL +I D L R    D++VIDS+  +        D  E+ PG   Q 
Sbjct: 144 ANVSLAA----ETALRDILDGLKRDN-FDLVVIDSIQTMW------SDAHEAGPGTVTQV 192

Query: 177 RLMSQALRKLT 187
           R  +  L +L 
Sbjct: 193 RACATELVRLA 203


>gi|319898713|ref|YP_004158806.1| DNA repair protein [Bartonella clarridgeiae 73]
 gi|319402677|emb|CBI76223.1| DNA repair protein [Bartonella clarridgeiae 73]
          Length = 461

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 67/157 (42%), Gaps = 10/157 (6%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG I+ L S     E    + SG   LD   G GGF +G  + I G    GK+TL   T 
Sbjct: 52  KGHIVALTSLCGDIEDAPRIHSGIAELDRVTG-GGFVRGSALLIAGDPGIGKSTLLTQTA 110

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A   + G    +V  E A+  I  R   +   N  + Q        +I   L     +D+
Sbjct: 111 AALSQKGYNIIYVSGEEAIAQIRLRAQRLKATNTSV-QLAAETNVEDILATLNTHKKLDM 169

Query: 149 IVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQAL 183
           +++DS+  L        D+ +S PG   Q R+ +QA+
Sbjct: 170 VIVDSIQTLW------SDVADSAPGTVTQVRISAQAM 200


>gi|242824534|ref|XP_002488278.1| meiotic recombination protein (Dmc1), putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218713199|gb|EED12624.1| meiotic recombination protein (Dmc1), putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 337

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 99/222 (44%), Gaps = 34/222 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQKT----GGTCAF 100
           +S+GS   D  LG GGF    I E+YG    GKT L+ HT   IAQ  K      G  A+
Sbjct: 98  ISTGSKQFDAILG-GGFSSMSISEVYGEFRCGKTQLS-HTMSVIAQLPKEMGGGEGKVAY 155

Query: 101 VDAEHALD----SIYARKLGVDL----KNLLISQPDTGEQALEITDMLVRS---GAVDII 149
           +D E        +  A + G+D     +N+  ++    E  LE+ + L +    G   ++
Sbjct: 156 MDTEGTFRPERIAQIAERYGLDAESTQENISYARALNSEHQLELLNTLSKEFAGGQYRLL 215

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           VIDS+     R +  G  GE L   Q +L +Q L +L+         ++  NQ++   G 
Sbjct: 216 VIDSIMNCF-RVDFSG-RGE-LAERQQKL-NQFLIRLSHLAEEFNVCVLMTNQVQSDPGA 271

Query: 209 -VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241
             +F   +     GG+ L   S+ R+ +R      RV  I+D
Sbjct: 272 SALFAGADGRKPVGGHVLAHASTTRVLLRKGRGDERVAKIQD 313


>gi|240850214|ref|YP_002971607.1| DNA repair protein RadA [Bartonella grahamii as4aup]
 gi|240267337|gb|ACS50925.1| DNA repair protein RadA [Bartonella grahamii as4aup]
          Length = 458

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 12/158 (7%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG I+ L S     E    + SG   LD   G GGF +G  + + G    GK+TL   T 
Sbjct: 52  KGRIVTLTSLSGNIEDAPRIHSGIAELDRVTG-GGFVRGSALLVGGDPGIGKSTLLTQTA 110

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE-ITDMLVRSGAVD 147
           A   + G    +V  E A+  I  R   ++  N  +      E  +E I   L     +D
Sbjct: 111 AALSRKGYNVIYVSGEEAIAQICLRAQRLEANNTEVKL--AAETNVEDILATLSEHKNLD 168

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQAL 183
           +++IDS+  L        D  +S PG   Q R+ +QA+
Sbjct: 169 MVIIDSIQTLW------SDTADSSPGTVTQVRIGAQAM 200


>gi|331000823|ref|ZP_08324469.1| DNA repair protein RadA [Parasutterella excrementihominis YIT
           11859]
 gi|329570351|gb|EGG52084.1| DNA repair protein RadA [Parasutterella excrementihominis YIT
           11859]
          Length = 448

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 9/106 (8%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD--SIYA 112
           L+ ALG GGF  G +V I G    GK+TL L  + +    G  C +   E +    ++ A
Sbjct: 59  LERALG-GGFVPGSVVLIGGDPGIGKSTLLLQAMCKMVALGQVCLYASGEESPTQVALRA 117

Query: 113 RKLGVDLKNL-LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           ++LGV+ K L  IS     E  LE  + ++   +   +VIDS+  L
Sbjct: 118 QRLGVNTKGLKFIS-----EIQLEKIEAIIEETSPQWVVIDSIQTL 158


>gi|258570189|ref|XP_002543898.1| DNA repair protein RAD51 [Uncinocarpus reesii 1704]
 gi|237904168|gb|EEP78569.1| DNA repair protein RAD51 [Uncinocarpus reesii 1704]
          Length = 348

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 110/255 (43%), Gaps = 40/255 (15%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  L  GG   G I EI+G   +GK+ L  HT+A + +         G C 
Sbjct: 101 CITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQLC-HTLAVTCQLPFDMGGGEGKCL 158

Query: 100 FVDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDI 148
           ++D E     +     A++ G+     L N+  ++    +  L++ +    ++      +
Sbjct: 159 YIDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSL 218

Query: 149 IVIDSVAALTPRAEIEGDMGE--SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           +++DS  +L  R +  G  GE  S     AR M + L++L      +   +V  NQ+  +
Sbjct: 219 LIVDSATSLY-RTDFSG-RGELSSRQNHLARFM-RTLQRLADEFGVA---VVITNQVVAQ 272

Query: 207 I----GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
           +      MF   P+   GGN L   S+ RL ++      R+  I D   +  +     + 
Sbjct: 273 VDGGPSAMFNPDPKKPIGGNILAHASTTRLSLKKGRGETRICKIYDSPCLPESDCLFAIN 332

Query: 256 KNKMASP-FKQVEFD 269
           ++ +  P  K VE D
Sbjct: 333 EDGIGDPTLKDVEKD 347


>gi|218883354|ref|YP_002427736.1| putative circadian clock protein, KaiC [Desulfurococcus
           kamchatkensis 1221n]
 gi|218764970|gb|ACL10369.1| putative circadian clock protein, KaiC [Desulfurococcus
           kamchatkensis 1221n]
          Length = 262

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 9/96 (9%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + SG  GLD  L  GG P+G +V + G   +GKT +++  I++    G    +V  E + 
Sbjct: 4   IPSGIPGLD-ELIEGGIPRGFMVALVGEPGTGKTAMSIQFISKGLLEGDKAIYVTTEESR 62

Query: 108 DSIY--ARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           +SI   +++ GVDLK      P   E  L + D L+
Sbjct: 63  ESIISQSKRFGVDLK------PYIDEGKLVVIDALM 92


>gi|15679105|ref|NP_276222.1| circadian clock protein KaiC [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622195|gb|AAB85583.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 470

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 22/150 (14%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA-F 100
           FE IE   +G  GLD+ +  GGFP+GR   IYG   +GKT +A+  + +     G     
Sbjct: 3   FENIEKAPTGIKGLDM-ITEGGFPRGRNTLIYGGPGTGKTFIAMEFLLKGASVYGEPGVM 61

Query: 101 VDAEHALDSIYARKLGVD-LKNLLISQ-------------PDTGEQALE-----ITDMLV 141
           V  + A++++       D L   LI +             PD G  +LE     + D + 
Sbjct: 62  VSFDEAMENLIENFRSSDRLLERLIDEGLLFIEDASRGMDPDAGSYSLEALKLRLEDAIR 121

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           R+GA   +V+D V  L    E +G +G  L
Sbjct: 122 RTGARR-VVLDKVDNLFDGTERQGMIGFEL 150


>gi|226530282|ref|NP_001149161.1| LOC100282783 [Zea mays]
 gi|195625178|gb|ACG34419.1| DNA repair protein RAD51 [Zea mays]
          Length = 298

 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 2/68 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCA 99
           + E   V+ +G  G+D  LG GG  +G++ E+ GP SSGKT + LH+ + +  K  G   
Sbjct: 55  VTENKHVLPTGLEGIDRLLG-GGLRQGQLTEVTGPSSSGKTQVCLHSASHAPVKHMGVVM 113

Query: 100 FVDAEHAL 107
           ++D  ++ 
Sbjct: 114 YLDTTNSF 121


>gi|326422580|gb|EGD71975.1| ATPase, RecA superfamily [Candidatus Parvarchaeum acidophilus
           ARMAN-5_'5-way FS']
          Length = 223

 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 13/123 (10%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE + SG  GLD  +  GGF KG I+ + G   +GK+  ++  I +  K      +V  E
Sbjct: 7   IERIPSGIYGLDSKIE-GGFEKGSIITVIGGPGAGKSIFSMQFIYEGLKRKEKTLYVSFE 65

Query: 105 HALDSIYARKLGVDL------KN----LLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
            +   +    L ++L      KN    +L + P   E  L I D +++S ++  +VIDS+
Sbjct: 66  ESEADLIRDMLAIELDPSEYIKNESLTILFASPINFEY-LSIID-VIKSKSISRVVIDSL 123

Query: 155 AAL 157
           +A+
Sbjct: 124 SAI 126


>gi|195451479|ref|XP_002072940.1| GK13420 [Drosophila willistoni]
 gi|194169025|gb|EDW83926.1| GK13420 [Drosophila willistoni]
          Length = 355

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 93/211 (44%), Gaps = 28/211 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GTCA 99
           ++++GS  LD  LG GG   G I EI+G    GKT L  HT+A       SQ  G G C 
Sbjct: 114 MLTTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLC-HTLAVTCQLPISQNGGEGKCL 171

Query: 100 FVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDI 148
           ++D E        S  A++  ++    L N+  ++    +Q  ++  M   ++      I
Sbjct: 172 YIDTEGTFRPERLSAIAQRYKMEEPDVLDNVAYARAYNSDQQTKLLHMAAGMMFESRYAI 231

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI- 207
           +++DS  AL  R+E  G  GE L   Q  L    LR L          +V  NQ+   + 
Sbjct: 232 LIVDSAMALY-RSEYVG-RGE-LAARQNHL-GLFLRMLQRLADEFGVAVVITNQVTASVD 287

Query: 208 ---GVMFGSPETTTGGNALKFYSSVRLDIRR 235
              G+     +   GG+ +   S+ RL +R+
Sbjct: 288 GGAGMFVADAKKPIGGHIMAHASTTRLYLRK 318


>gi|288931813|ref|YP_003435873.1| DNA repair and recombination protein RadA [Ferroglobus placidus DSM
           10642]
 gi|288894061|gb|ADC65598.1| DNA repair and recombination protein RadA [Ferroglobus placidus DSM
           10642]
          Length = 340

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 95/210 (45%), Gaps = 27/210 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----LALHTIAQSQKTG--GTCAFV 101
           +++GS  LD  LG GG     I E++G   SGKT     LA++     +K G  G    +
Sbjct: 103 ITTGSKALDDLLG-GGVETQAITELFGEFGSGKTQICHQLAVNVQLPKEKGGLNGVVVVI 161

Query: 102 DAE------HALDSIYARKLGVD--LKNLLISQP-DTGEQAL------EITDMLVRSG-A 145
           D E        +    A+ L  D  L+N+ ++Q  ++  Q L      E+ + L + G  
Sbjct: 162 DTEGTFRPERIVQMAKAKDLDPDVALENIYVAQAYNSNHQMLLVDNAKELANKLRKEGKH 221

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           V ++V+DS+ A   RAE  G    +L   Q +L ++ L  L          +V  NQ+  
Sbjct: 222 VRLLVVDSLTAHF-RAEYIGRG--TLADRQQKL-NRHLHDLLRFGELFNAAIVVTNQVMA 277

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           K    FG P    GG+ +   ++ R+ +R+
Sbjct: 278 KPDQFFGDPTKPVGGHIVAHTATFRVYLRK 307


>gi|237843305|ref|XP_002370950.1| meiotic recombination protein DMC1-like protein, putative
           [Toxoplasma gondii ME49]
 gi|211968614|gb|EEB03810.1| meiotic recombination protein DMC1-like protein, putative
           [Toxoplasma gondii ME49]
 gi|221481850|gb|EEE20220.1| meiotic recombination protein dmc1, putative [Toxoplasma gondii
           GT1]
 gi|221502349|gb|EEE28082.1| meiotic recombination protein dmc1, putative [Toxoplasma gondii
           VEG]
          Length = 349

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 103/237 (43%), Gaps = 40/237 (16%)

Query: 31  AIMQLGSQGSIFEGIEVV---------SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           A  +LG   +   G+E+V         ++GS  LD  LG GGF    I E++G    GKT
Sbjct: 86  AAAKLGMCNAFITGVELVQKRGRVIKITTGSDQLDQLLG-GGFETMSITELFGENRCGKT 144

Query: 82  TLALHTIA------QSQKTG-GTCAFVDAEHAL--DSI--YARKLGVD----LKNLLISQ 126
            L  HT+       +  K G G   ++D E     + I   A + G+D    L N++ ++
Sbjct: 145 QLC-HTVCVTAQLPRDMKGGCGKVCYIDTEGTFRPEKIQGIAERFGLDGDGVLDNIMYAR 203

Query: 127 PDTGE---QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL--MSQ 181
             T E   Q L +    +      ++++DS+ AL  R +  G  GE L   Q +L  M  
Sbjct: 204 AFTTEHMHQLLTLAAAKMCEERFSVLIVDSIIALF-RVDFSG-RGE-LADRQQKLNRMLS 260

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIG---VMFGSPETTTGGNALKFYSSVRLDIRR 235
            + KL    + +   ++  NQ+    G       +P    GG+ L   S+ RL +R+
Sbjct: 261 IMMKLAEQYNLA---VMLTNQVMSDPGGGLTFTANPTKPVGGHVLGHASTTRLSMRK 314


>gi|326484198|gb|EGE08208.1| hypothetical protein TEQG_07266 [Trichophyton equinum CBS 127.97]
          Length = 475

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 13/108 (12%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARKLGVD--- 118
           G  +G I E+ GP  SGKT+LA+     + K G T  ++D    +  S + + L  D   
Sbjct: 106 GIRRGEITELSGPRGSGKTSLAMTAAVNALKQGETVIWIDTAGPMCMSRFEKMLSRDSTP 165

Query: 119 ------LKNLLISQPDTGEQALEITDMLV---RSGAVDIIVIDSVAAL 157
                 L+NLL  QP T    L +    +         +IV+DS++ L
Sbjct: 166 LETQDRLRNLLHFQPTTLAHLLALISHPIADFPPPNTGLIVVDSISCL 213


>gi|83645759|ref|YP_434194.1| replicative DNA helicase [Hahella chejuensis KCTC 2396]
 gi|83633802|gb|ABC29769.1| Replicative DNA helicase [Hahella chejuensis KCTC 2396]
          Length = 236

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 19/131 (14%)

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTT+AL  + Q+ K G  C F   E++  ++  +   +D +   ++QP     AL+I+D
Sbjct: 78  GKTTMALQLLLQAIKQGRQCFFFSLEYSKKALIEKLTALD-QQFELNQPLL---ALDISD 133

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL------PGMQARLMSQALRKLTSSISR 192
            +    + D I+  +   +T  + I  D  + L      P +Q     Q +  L S    
Sbjct: 134 EI----SADYIINQTKERVTEGSLIAVDYLQLLDQNRNKPPLQ-----QQIEDLKSYARA 184

Query: 193 SKCILVFINQM 203
            KCILVFI+Q+
Sbjct: 185 KKCILVFISQI 195


>gi|326472536|gb|EGD96545.1| hypothetical protein TESG_03985 [Trichophyton tonsurans CBS 112818]
          Length = 440

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 13/108 (12%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARKLGVD--- 118
           G  +G I E+ GP  SGKT+LA+     + K G T  ++D    +  S + + L  D   
Sbjct: 106 GIRRGEITELSGPRGSGKTSLAMTAAVNALKQGETVIWIDTAGPMCMSRFEKMLSRDSTP 165

Query: 119 ------LKNLLISQPDTGEQALEITDMLV---RSGAVDIIVIDSVAAL 157
                 L+NLL  QP T    L +    +         +IV+DS++ L
Sbjct: 166 LETQDRLRNLLHFQPTTLAHLLALISHPIADFPPPNTGLIVVDSISCL 213


>gi|323491952|ref|ZP_08097121.1| hypothetical protein VIBR0546_04282 [Vibrio brasiliensis LMG 20546]
 gi|323313810|gb|EGA66905.1| hypothetical protein VIBR0546_04282 [Vibrio brasiliensis LMG 20546]
          Length = 225

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 6/117 (5%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL-HTIAQSQKT 94
           G+Q S  E  +  S+G   LD  L  GGFPK  +VE+ G  S G+  L L H    SQ+ 
Sbjct: 17  GAQTS--ENQDYYSTGYDLLDQKLE-GGFPKHGVVELQGETSIGELRLLLPHLKNTSQQR 73

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
                F+     L +      G+D   +L+  P+   QAL   +  +RSGA   +++
Sbjct: 74  --LSVFIHPPGYLCAEQLHHFGLDTNKVLMISPNNEHQALWAAEQCLRSGACSNVLL 128


>gi|163868010|ref|YP_001609214.1| DNA repair protein RadA [Bartonella tribocorum CIP 105476]
 gi|161017661|emb|CAK01219.1| DNA repair protein [Bartonella tribocorum CIP 105476]
          Length = 458

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 14/159 (8%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG I+ L S     +    + SG   LD   G GGF +G  + + G    GK+TL   T 
Sbjct: 52  KGRIVALTSLSGDIQDAPRIHSGIAELDRVTG-GGFVRGSALLVGGDPGIGKSTLLTQTA 110

Query: 89  AQSQKTGGTCAFVDAEHALDSIY--ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           A   + G    +V  E A+  I   A++LG     + ++     E   +I   L     +
Sbjct: 111 AALSRKGHNVIYVSGEEAIAQICLRAQRLGAHNTEVKLAAETNVE---DILATLSEHKNL 167

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQAL 183
           D+++IDS+  L        D  +S PG   Q R+ +QA+
Sbjct: 168 DMVIIDSIQTLW------SDTADSAPGTVTQVRIGAQAM 200


>gi|119720050|ref|YP_920545.1| putative circadian clock protein, KaiC [Thermofilum pendens Hrk 5]
 gi|119525170|gb|ABL78542.1| putative circadian clock protein, KaiC [Thermofilum pendens Hrk 5]
          Length = 265

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 3/75 (4%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G  GLD  L  GG P+G  V + G   +GKT   LH +    K G +  +V  E + 
Sbjct: 6   LSTGVAGLDKLLA-GGVPEGFFVALVGMPGTGKTIACLHFVWAGLKAGESAIYVTTEESR 64

Query: 108 DSIY--ARKLGVDLK 120
           +SI   A + G+D +
Sbjct: 65  ESIVRQAAQFGMDFE 79


>gi|68076139|ref|XP_679989.1| meiotic recombination protein dmc1-like protein, [Plasmodium
           berghei strain ANKA]
 gi|56500849|emb|CAH94824.1| meiotic recombination protein dmc1-like protein, putative
           [Plasmodium berghei]
          Length = 345

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 45/218 (20%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-------QKTGGTCAF 100
           +++GS  LD  LG GGF    I E++G    GKT +  HT+A +       Q   G   +
Sbjct: 108 ITTGSSVLDKTLG-GGFESMSITELFGENRCGKTQVC-HTLAVTAQLPKNMQGGNGKVCY 165

Query: 101 VDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGA------V 146
           +D E           A++ G++    L N+L ++  T E    +  +L  S A       
Sbjct: 166 IDTEGTFRPEKICKIAQRFGLNSEDVLDNILYARAFTHEH---LYQLLATSAAKMCEEPF 222

Query: 147 DIIVIDSVAALTPRAEI--EGDMGESLPGMQARLMSQALRKLTSSISR----SKCILVFI 200
            ++V+DS+ +L  R +    G++ E           Q L K+ S +S+        +V  
Sbjct: 223 ALLVVDSIISLF-RVDFSGRGNLSER---------QQKLNKIMSVLSKLGEQFNIAIVIT 272

Query: 201 NQMRMKIG---VMFGSPETTTGGNALKFYSSVRLDIRR 235
           NQ+    G       +P    GG+ +   S+ RL +R+
Sbjct: 273 NQVMSDPGATMTFIANPMKPVGGHVIGHASTTRLSLRK 310


>gi|51893493|ref|YP_076184.1| hypothetical protein STH2355 [Symbiobacterium thermophilum IAM
           14863]
 gi|51857182|dbj|BAD41340.1| conserved domain protein [Symbiobacterium thermophilum IAM 14863]
          Length = 466

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 3/77 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G  GLD  LG G FP    + + G   +GKTTL +  + +  + G   A+   E   
Sbjct: 5   LSTGVEGLDSVLGGGLFPASATL-VRGAPGTGKTTLGIQFLCEGARRGEGGAYFTFEEFP 63

Query: 108 DSIY--ARKLGVDLKNL 122
           + IY  AR+LG DL+ L
Sbjct: 64  EQIYRDARELGFDLQAL 80


>gi|303279168|ref|XP_003058877.1| Rad51 DNA recombinase 1 [Micromonas pusilla CCMP1545]
 gi|226460037|gb|EEH57332.1| Rad51 DNA recombinase 1 [Micromonas pusilla CCMP1545]
          Length = 411

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 21/144 (14%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK------ 93
           ++ E   ++S+GS  LD  LG GGF  G + EIYG   +GKT L  HT+A + +      
Sbjct: 102 AVRESTIMISTGSSKLDELLG-GGFESGSLTEIYGEFRTGKTQLC-HTLAVTCQLPLAQG 159

Query: 94  -TGGTCAFVDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEI---TDMLV 141
              G   ++D E           A + G+D    L N+  ++    E   E+      ++
Sbjct: 160 GAEGKAMYIDTEGTFRPQRLIAIAERFGMDSAAVLDNVAYAKAHNCEHQSELLVAAAGMM 219

Query: 142 RSGAVDIIVIDSVAALTPRAEIEG 165
                 +I++DSV  L  R E EG
Sbjct: 220 AEARFGVIIVDSVTNLY-RTEYEG 242


>gi|269986184|gb|EEZ92496.1| putative circadian clock protein, KaiC [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 237

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE  ++G  GLD AL  GGFPK  +V + G   +GKTT +   + +  K G    +   E
Sbjct: 10  IERETTGIPGLDEALN-GGFPKSSVVFLTGTPGAGKTTFSFQFLLEGAKKGEKGLYFTLE 68

Query: 105 HALDSIYARKLGVDLK 120
            + D +  + + VD K
Sbjct: 69  ESQDDLMQQFMMVDSK 84


>gi|281204720|gb|EFA78915.1| putative DNA repair protein [Polysphondylium pallidum PN500]
          Length = 350

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 91/218 (41%), Gaps = 45/218 (20%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           + +GS  LD +L  GGF  G I EI+G   +GKT +        Q T       G   ++
Sbjct: 113 IRTGSKELD-SLLEGGFETGSITEIFGEFRTGKTQICHTLCVTCQLTLAQGGGEGRALYI 171

Query: 102 DA--------------------EHALDSI-YARKLGVDLKNLLISQPDTGEQALEITDML 140
           D                     EH LD++ YAR    D +  L+ Q            M+
Sbjct: 172 DTEGTFRPERLLAIAERYNLNGEHVLDNVAYARAYNSDHQMQLLVQASA---------MM 222

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
             S  + ++++DS  +L  R +  G  GE L   Q R +++ LR L          +V  
Sbjct: 223 SESRYI-LLIVDSATSLY-RTDYSG-RGE-LSDRQ-RHLARFLRALQRLADEFGVAVVIT 277

Query: 201 NQMRMKI--GVMFG-SPETTTGGNALKFYSSVRLDIRR 235
           NQ+  ++  G MF  +P    GG+ +   S+ RL +R+
Sbjct: 278 NQVVAQVDGGAMFNPNPNKPIGGHIMAHASTTRLSLRK 315


>gi|156842362|ref|XP_001644549.1| hypothetical protein Kpol_1052p39 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115194|gb|EDO16691.1| hypothetical protein Kpol_1052p39 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 334

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 105/233 (45%), Gaps = 33/233 (14%)

Query: 30  GAIMQLGS-----QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           G I+Q+G      Q +I + +  +S+GS  LD  LG GG     I E++G    GKT +A
Sbjct: 73  GKIIQVGFIPATIQLNIRQRVLSLSTGSKQLDSILG-GGIMTMSITEVFGEFRCGKTQMA 131

Query: 85  LHTIAQSQKTG-------GTCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDT 129
            HT+  + +         G  A++D E           A +  +D    L+N+  ++   
Sbjct: 132 -HTLCVTTQLPREMGGGEGKVAYIDTEGTFRPERIKQIAERYNLDPDACLENVSYARALN 190

Query: 130 GEQALEITDML---VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
            E  +E+ + L   + SG   +IV+DS+ A   R +  G  GE L   Q +L +Q L KL
Sbjct: 191 SEHQMELVEKLGEDLSSGEYRLIVMDSIMA-NFRVDYCG-RGE-LNERQQKL-NQHLFKL 246

Query: 187 TSSISRSKCILVFINQMRMKIG--VMFGSPE--TTTGGNALKFYSSVRLDIRR 235
                     +   NQ++   G   +F S +     GG+ L   S+ R+ +R+
Sbjct: 247 NRVAEEFNVAVFMTNQVQSDPGASALFASADGRKPVGGHVLAHASATRILLRK 299


>gi|21227471|ref|NP_633393.1| DNA repair and recombination protein RadB [Methanosarcina mazei
           Go1]
 gi|20905843|gb|AAM31065.1| DNA repair protein [Methanosarcina mazei Go1]
          Length = 248

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 64/128 (50%), Gaps = 10/128 (7%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           +++SSG   LD  LG GGF +G + +++G   +GKT + +    +  K G    F+D E 
Sbjct: 29  KLLSSGCKPLDELLG-GGFERGIVTQVFGAAGTGKTNICIQLAVECVKQGQKVIFIDTE- 86

Query: 106 ALDSIYARKLGVD-----LKNLLISQPDTGEQALEITDMLVRSGA--VDIIVIDSVAALT 158
            L  +  +++  +      ++++I +P + E+       + R     V ++V+DS  +  
Sbjct: 87  GLSPVRFKQIAGENAKEIARSIIIYEPLSFEEQYSSVREVERIAGENVGLVVLDSATSYY 146

Query: 159 PRAEIEGD 166
            R E+E D
Sbjct: 147 -RYELEDD 153


>gi|257387123|ref|YP_003176896.1| KaiA binding [Halomicrobium mukohataei DSM 12286]
 gi|257169430|gb|ACV47189.1| KaiA binding [Halomicrobium mukohataei DSM 12286]
          Length = 228

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 46/113 (40%), Gaps = 5/113 (4%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + SG  G D  L  GG  + R+  I GP  SGKTT +   I Q  K G  C +V      
Sbjct: 3   LESGVPGFD-ELVEGGLLENRLYVISGPPGSGKTTFSAQFITQGAKRGEDCLYVTMHETK 61

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           + +     G D       Q D    A++  +++  SG   I    S   LT R
Sbjct: 62  EELMQDMAGYDFGFDRAMQSD----AIQFLNLVTESGKRTITQFGSEGGLTSR 110


>gi|116495776|ref|YP_807510.1| DNA repair protein RadA [Lactobacillus casei ATCC 334]
 gi|116105926|gb|ABJ71068.1| DNA replication and repair protein RadA [Lactobacillus casei ATCC
           334]
          Length = 454

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 23/171 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V +G   L+  LG GG   G +V I G    GK+TL L    Q   TGGT  +V  E + 
Sbjct: 70  VKTGLDELNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSGQLANTGGTVLYVSGEESA 128

Query: 108 DSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
             I  R  +LGV    + +  P+T   ++E    ++     D +VIDSV  +        
Sbjct: 129 SQIKMRAGRLGVANSGMYL-YPETDMPSIE---DVINQMQPDYVVIDSVQTM-------- 176

Query: 166 DMGESLPGMQARLMS-QALRKLTSS---ISRSKCILVFINQMRMKIGVMFG 212
               ++P M + + S   +R++T+    I++SK + +FI     K G + G
Sbjct: 177 ----NVPEMNSAVGSVTQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAG 223


>gi|145239409|ref|XP_001392351.1| DNA repair protein rhp51 [Aspergillus niger CBS 513.88]
 gi|134076861|emb|CAK48229.1| unnamed protein product [Aspergillus niger]
          Length = 347

 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 95/211 (45%), Gaps = 29/211 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  LG GG   G I EI+G   +GK+ +  HT+A + +         G C +
Sbjct: 102 ITTGSKQLDTLLG-GGIETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 159

Query: 101 VDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDII 149
           +D E     +     A++ G+     L N+  ++    +  L++ +    ++      ++
Sbjct: 160 IDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 219

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           V+DS  +L  R +  G  GE L   Q  L ++ +R L          +V  NQ+  ++  
Sbjct: 220 VVDSATSLY-RTDFNG-RGE-LSSRQTHL-AKFMRTLQRLADEFGIAVVITNQVVAQVDG 275

Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
               MF   P+   GGN +   S+ RL +++
Sbjct: 276 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKK 306


>gi|145614388|ref|XP_362387.2| hypothetical protein MGG_11350 [Magnaporthe oryzae 70-15]
 gi|145021318|gb|EDK05447.1| hypothetical protein MGG_11350 [Magnaporthe oryzae 70-15]
          Length = 780

 Score = 41.2 bits (95), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 95/211 (45%), Gaps = 29/211 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  LG GG   G + E++G   +GK+ +  HT+A + +         G C +
Sbjct: 533 ITTGSKNLDTMLG-GGIETGSVTELFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 590

Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDII 149
           +D E     +     A + G+     L N+  ++    +  L++ +    ++      ++
Sbjct: 591 IDTEGTFRPVRLLAVANRFGLSGEEVLDNVAYARAYNSDHQLQLLNQASAMMCETRFSLL 650

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           ++DS  AL  R +  G  GE L   Q  L ++ +R+L          +V  NQ+  ++  
Sbjct: 651 IVDSATALY-RTDFLG-RGE-LSSRQTHL-AKFMRQLQRLADEFGIAVVISNQVVAQVDG 706

Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
               MF   P+   GGN +   S+ RL +++
Sbjct: 707 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKK 737


>gi|240140927|ref|YP_002965407.1| RecA-superfamily ATPase implicated in signal transduction
           [Methylobacterium extorquens AM1]
 gi|240010904|gb|ACS42130.1| RecA-superfamily ATPase implicated in signal transduction
           [Methylobacterium extorquens AM1]
          Length = 575

 Score = 41.2 bits (95), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 15/141 (10%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99
           +I EG  V S+G  GLD  L  GGF +G  + + G   +GKT +    IA +   G  C 
Sbjct: 260 TIAEG--VASTGIPGLDAMLEPGGFHRGTSILVSGESGTGKTMITSSMIAAACARGERCM 317

Query: 100 FVDAEHALDSIY--ARKLGVDLKNLL--------ISQPDTGEQALEITDML--VRSGAVD 147
               E + D I   AR +G+DL   +         ++P      + +  M   +   A  
Sbjct: 318 SFVFEESGDQIIRNARSIGLDLARHVEAGLLRFEAARPSLYGLEMHLARMHRDIDRFAPT 377

Query: 148 IIVIDSVAALT-PRAEIEGDM 167
           ++V+D ++AL  P AE++  M
Sbjct: 378 VVVVDPLSALRGPPAELQATM 398


>gi|119946267|ref|YP_943947.1| DNA repair protein RadA [Psychromonas ingrahamii 37]
 gi|119864871|gb|ABM04348.1| DNA repair protein RadA [Psychromonas ingrahamii 37]
          Length = 470

 Score = 41.2 bits (95), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 83/185 (44%), Gaps = 23/185 (12%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQ---GSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +K++ AA+++ +     GA+   G Q   G   E    VS+G   LD  LG GG   G +
Sbjct: 45  TKSVNAAVTRNKNAGYTGALSN-GVQRISGVQIENATRVSTGLSELDRVLG-GGITLGSV 102

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR-----KLGVDLKNLLI 124
           V I G   SGKTTL L  +A+      +  +V AE +L     R     KL  +  N L+
Sbjct: 103 VLISGDPGSGKTTL-LTKVAEVMSQSMSTLYVTAEESLSQWAKRGIERLKLNFNEDNFLL 161

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQA 182
           S  D  E   +I D  + +  V  ++ DS+ A       E +  E   G   Q ++ ++ 
Sbjct: 162 SDTDCIE---DIVDQCLENN-VRFLIADSIQAF------ESNQAEGTAGGVTQVKICAKI 211

Query: 183 LRKLT 187
           L +L 
Sbjct: 212 LNRLC 216


>gi|161527599|ref|YP_001581425.1| RecA/RadA recombinase-like protein [Nitrosopumilus maritimus SCM1]
 gi|160338900|gb|ABX11987.1| RecA/RadA recombinase-like protein [Nitrosopumilus maritimus SCM1]
          Length = 217

 Score = 41.2 bits (95), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
           ++S+G   LD +L  GG P G IV+I+G   +GKT L L     S K GG   + D 
Sbjct: 1   MISTGLEKLDKSL-FGGIPNGVIVDIFGKNGTGKTQLLLQLAINSIKKGGHVLYFDT 56


>gi|145492218|ref|XP_001432107.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399216|emb|CAK64710.1| unnamed protein product [Paramecium tetraurelia]
          Length = 340

 Score = 41.2 bits (95), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 113/260 (43%), Gaps = 33/260 (12%)

Query: 3   YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIF---EGIEVVSSGSLGLDIAL 59
           Y  + N+++     +A + ++     K  + Q      +    E I  +S+GS   D  L
Sbjct: 52  YTAKKNLMNIKGMTDAKIEKLVEAVAKLVVNQFKPATDVLKQRERIVHISTGSTKFDKLL 111

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-------KTGGTCAFVDAE-----HAL 107
             GG   G I EI+G   +GK+ +  HT+A +        + GG C ++D E       L
Sbjct: 112 R-GGIETGGITEIFGEFRTGKSQIC-HTLAVTCQMNDARGRPGGKCLYIDTEGTFRPERL 169

Query: 108 DSIYAR-KLGVD--LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRA 161
             I  R +LG++  L+N+  ++    ++ +++      L+ +    ++++DS  AL  R 
Sbjct: 170 SEIAKRFELGIEEVLENVSFARAYNVDEQMKLLVQACNLMSTDKYALLIVDSATALY-RT 228

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF------GSPE 215
           +  G  GE L   Q  L  + LR L          +V  NQ+  ++   +      G  +
Sbjct: 229 DYLG-RGE-LSARQNHL-GKFLRNLQRLADEFNVAVVITNQVMSQVEGFYCTMMAMGDQK 285

Query: 216 TTTGGNALKFYSSVRLDIRR 235
              GGN +   S+ RL +R+
Sbjct: 286 KPIGGNIMAHASTTRLYLRK 305


>gi|218532366|ref|YP_002423182.1| circadian clock protein KaiC [Methylobacterium chloromethanicum
           CM4]
 gi|254563436|ref|YP_003070531.1| RecA-superfamily ATPase implicated in signal transduction
           [Methylobacterium extorquens DM4]
 gi|218524669|gb|ACK85254.1| putative circadian clock protein, KaiC [Methylobacterium
           chloromethanicum CM4]
 gi|254270714|emb|CAX26719.1| RecA-superfamily ATPase implicated in signal transduction
           [Methylobacterium extorquens DM4]
          Length = 575

 Score = 41.2 bits (95), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 15/141 (10%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99
           +I EG  V S+G  GLD  L  GGF +G  + + G   +GKT +    IA +   G  C 
Sbjct: 260 TIAEG--VASTGIPGLDAMLEPGGFHRGTSILVSGESGTGKTMITSSMIAAACARGERCM 317

Query: 100 FVDAEHALDSIY--ARKLGVDLKNLL--------ISQPDTGEQALEITDML--VRSGAVD 147
               E + D I   AR +G+DL   +         ++P      + +  M   +   A  
Sbjct: 318 SFVFEESGDQIIRNARSIGLDLARHVEAGLLRFEAARPSLYGLEMHLARMHRDIDRFAPT 377

Query: 148 IIVIDSVAALT-PRAEIEGDM 167
           ++V+D ++AL  P AE++  M
Sbjct: 378 VVVVDPLSALRGPPAELQATM 398


>gi|259047821|ref|ZP_05738222.1| DNA repair protein RadA [Granulicatella adiacens ATCC 49175]
 gi|259035498|gb|EEW36753.1| DNA repair protein RadA [Granulicatella adiacens ATCC 49175]
          Length = 429

 Score = 41.2 bits (95), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 8/123 (6%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           +E +  V +    LD  LG GG   G +V I G    GK+TL L   ++ Q+T GT  +V
Sbjct: 36  YERVNRVKTSISELDRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSSELQQTQGTVLYV 94

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT- 158
             E +   I  R  +LG+      I      E  LE     V +   D ++IDS+  +T 
Sbjct: 95  SGEESASQIKMRAERLGMQADGFYI----YAETNLEDIVAQVEALKPDYVIIDSIQTMTH 150

Query: 159 PRA 161
           P+A
Sbjct: 151 PQA 153


>gi|163853508|ref|YP_001641551.1| circadian clock protein KaiC [Methylobacterium extorquens PA1]
 gi|163665113|gb|ABY32480.1| Non-specific serine/threonine protein kinase [Methylobacterium
           extorquens PA1]
          Length = 575

 Score = 41.2 bits (95), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 15/141 (10%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99
           +I EG  V S+G  GLD  L  GGF +G  + + G   +GKT +    IA +   G  C 
Sbjct: 260 TIAEG--VASTGIPGLDAMLEPGGFHRGTSILVSGESGTGKTMITSSMIAAACARGERCM 317

Query: 100 FVDAEHALDSIY--ARKLGVDLKNLL--------ISQPDTGEQALEITDML--VRSGAVD 147
               E + D I   AR +G+DL   +         ++P      + +  M   +   A  
Sbjct: 318 SFVFEESGDQIIRNARSIGLDLARHVEAGLLRFEAARPSLYGLEMHLARMHRDIDRFAPT 377

Query: 148 IIVIDSVAALT-PRAEIEGDM 167
           ++V+D ++AL  P AE++  M
Sbjct: 378 VVVVDPLSALRGPPAELQATM 398


>gi|312283561|dbj|BAJ34646.1| DNA recombinational repair protein [Magnaporthe oryzae]
          Length = 353

 Score = 41.2 bits (95), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 95/211 (45%), Gaps = 29/211 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  LG GG   G + E++G   +GK+ +  HT+A + +         G C +
Sbjct: 106 ITTGSKNLDTMLG-GGIETGSVTELFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 163

Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDII 149
           +D E     +     A + G+     L N+  ++    +  L++ +    ++      ++
Sbjct: 164 IDTEGTFRPVRLLAVANRFGLSGEEVLDNVAYARAYNSDHQLQLLNQASAMMCETRFSLL 223

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           ++DS  AL  R +  G  GE L   Q  L ++ +R+L          +V  NQ+  ++  
Sbjct: 224 IVDSATALY-RTDFLG-RGE-LSSRQTHL-AKFMRQLQRLADEFGIAVVISNQVVAQVDG 279

Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
               MF   P+   GGN +   S+ RL +++
Sbjct: 280 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKK 310


>gi|119495909|ref|XP_001264730.1| DNA repair protein RAD51, putative [Neosartorya fischeri NRRL 181]
 gi|119412892|gb|EAW22833.1| DNA repair protein RAD51, putative [Neosartorya fischeri NRRL 181]
          Length = 348

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 105/244 (43%), Gaps = 35/244 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  LG GG   G I EI+G   +GK+ +  HT+A + +         G C +
Sbjct: 103 ITTGSKQLDTLLG-GGIETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 160

Query: 101 VDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDII 149
           +D E     +     A++ G+     L N+  ++    +  L++ +    ++      ++
Sbjct: 161 IDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 220

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           V+DS  +L  R +  G  GE L   Q  L ++ +R L          +V  NQ+  ++  
Sbjct: 221 VVDSATSLY-RTDFNG-RGE-LSSRQTHL-AKFMRTLQRLADEFGIAVVITNQVVAQVDG 276

Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               MF   P+   GGN +   S+ RL ++      RV  I D   +  +     + ++ 
Sbjct: 277 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRVCKIYDSPCLPESDCLFAINEDG 336

Query: 259 MASP 262
           +  P
Sbjct: 337 IGDP 340


>gi|112984536|ref|NP_001037484.1| Rad51 homolog [Bombyx mori]
 gi|2058709|gb|AAB53330.1| Rad51 homolog [Bombyx mori]
          Length = 338

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 100/213 (46%), Gaps = 35/213 (16%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-----QKTG--GTCAF 100
           +++GS  LD  LG GG   G I EI+G   +GKT L  HT+A +     +++G  G C +
Sbjct: 101 LTTGSKELDRLLG-GGIETGSITEIFGEFRTGKTQLC-HTLAVTCQLPIEQSGGEGKCMY 158

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQP-DTGEQALEITDMLVRSGAV----- 146
           +D E           A++ G++    L N+  ++  +T  Q    T +LV++ A+     
Sbjct: 159 IDTEGTFRPERLLAVAQRYGMEGAAVLDNVAYARAYNTDHQ----TQLLVQACAMMAESR 214

Query: 147 -DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
             +I++DS  AL  R +  G  GE L   Q  L  + +R L          ++  NQ+  
Sbjct: 215 YSLIIVDSATALY-RTDYSG-RGE-LNSRQLHL-GRFMRMLLRLADEFGVAVIITNQVVA 270

Query: 206 K---IGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           +   +GV     +   GG+ +   S+ RL +R+
Sbjct: 271 QVDSVGVFNADTKKPIGGHIIAHASTTRLYLRK 303


>gi|325921183|ref|ZP_08183049.1| RecA-superfamily ATPase possibly involved in signal transduction
           [Xanthomonas gardneri ATCC 19865]
 gi|325548325|gb|EGD19313.1| RecA-superfamily ATPase possibly involved in signal transduction
           [Xanthomonas gardneri ATCC 19865]
          Length = 535

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +++G+ GLD  L  GG P  R+  + G   SGKTTLAL  +      G +C +V     +
Sbjct: 43  ITTGTEGLDTILR-GGLPPNRLYLLEGQPGSGKTTLALQFLLDGAARGESCLYVTLSETI 101

Query: 108 DSI 110
           D +
Sbjct: 102 DEL 104



 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 80/178 (44%), Gaps = 27/178 (15%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + VSSG   +D AL  GG  +G    + GP  SGKT +AL  +A + + G  C  ++ + 
Sbjct: 284 DAVSSGVERID-ALLYGGPLRGTSTLLTGPAGSGKTNIALQYVAAACERGEHCCILEFDE 342

Query: 106 ALDSIYAR--KLGVDLKNLL------ISQPDTGEQALEITDMLVRSGAVD-----IIVID 152
              ++  R   LG+DL+  L      + Q D  E         VR G+V+     ++VID
Sbjct: 343 RTGTLLTRAESLGMDLRKHLDSGLLELHQMDPAELTPGEFAWAVR-GSVEERQCRVLVID 401

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           S+               S+P  + +LM Q + +L S +++S      +N     +G M
Sbjct: 402 SLNGYL----------SSMP-QEKQLMLQ-MHELLSYLNQSGVTTFLVNPQHGLVGTM 447


>gi|70995295|ref|XP_752407.1| DNA repair protein RAD51 [Aspergillus fumigatus Af293]
 gi|66850042|gb|EAL90369.1| DNA repair protein RAD51, putative [Aspergillus fumigatus Af293]
 gi|159131162|gb|EDP56275.1| DNA repair protein RAD51, putative [Aspergillus fumigatus A1163]
          Length = 348

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 105/244 (43%), Gaps = 35/244 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  LG GG   G I EI+G   +GK+ +  HT+A + +         G C +
Sbjct: 103 ITTGSKQLDTLLG-GGIETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 160

Query: 101 VDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDII 149
           +D E     +     A++ G+     L N+  ++    +  L++ +    ++      ++
Sbjct: 161 IDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 220

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           V+DS  +L  R +  G  GE L   Q  L ++ +R L          +V  NQ+  ++  
Sbjct: 221 VVDSATSLY-RTDFNG-RGE-LSSRQTHL-AKFMRTLQRLADEFGIAVVITNQVVAQVDG 276

Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               MF   P+   GGN +   S+ RL ++      RV  I D   +  +     + ++ 
Sbjct: 277 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRVCKIYDSPCLPESDCLFAINEDG 336

Query: 259 MASP 262
           +  P
Sbjct: 337 IGDP 340


>gi|121701915|ref|XP_001269222.1| DNA repair protein RAD51, putative [Aspergillus clavatus NRRL 1]
 gi|119397365|gb|EAW07796.1| DNA repair protein RAD51, putative [Aspergillus clavatus NRRL 1]
          Length = 347

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 105/244 (43%), Gaps = 35/244 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  LG GG   G I EI+G   +GK+ +  HT+A + +         G C +
Sbjct: 102 ITTGSKQLDTLLG-GGIETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 159

Query: 101 VDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDII 149
           +D E     +     A++ G+     L N+  ++    +  L++ +    ++      ++
Sbjct: 160 IDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 219

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           V+DS  +L  R +  G  GE L   Q  L ++ +R L          +V  NQ+  ++  
Sbjct: 220 VVDSATSLY-RTDFNG-RGE-LSSRQTHL-AKFMRTLQRLADEFGIAVVITNQVVAQVDG 275

Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               MF   P+   GGN +   S+ RL ++      RV  I D   +  +     + ++ 
Sbjct: 276 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRVCKIYDSPCLPESDCLFAINEDG 335

Query: 259 MASP 262
           +  P
Sbjct: 336 IGDP 339


>gi|220918233|ref|YP_002493537.1| circadian clock protein, KaiC [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956087|gb|ACL66471.1| putative circadian clock protein, KaiC [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 498

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           ++G  GLD  LG GGFP+ RI  + G   +GKTTL+L  + +  + G +C ++
Sbjct: 13  ATGIPGLDDVLG-GGFPRRRIHLLQGSPGAGKTTLSLQFLMEGVRQGESCLYI 64


>gi|328788487|ref|XP_624827.3| PREDICTED: DNA repair protein RAD51 homolog 1 [Apis mellifera]
          Length = 341

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 99/217 (45%), Gaps = 36/217 (16%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGT 97
           I  V++GS  LD  LG GG   G I EI+G   SGKT L  HT+A + +         G 
Sbjct: 100 IVFVTTGSSELDRLLG-GGIETGSITEIFGEFRSGKTQLC-HTLAVNCQLPIDMGGAEGK 157

Query: 98  CAFVDAE-----HALDSIYAR-KLGVD--LKNLLISQP-DTGEQALEITDMLVRSGAV-- 146
           C ++D E       L ++  R K+  D  L N+  ++  +T  Q    T +L+++ A+  
Sbjct: 158 CLYIDTEGTFRPERLIAVAERYKIAGDSVLDNVACARAYNTDHQ----TQLLIQASAMMT 213

Query: 147 ----DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                ++++DS   L  R E  G  GE L   Q  L  + LR L          +V  NQ
Sbjct: 214 ESRYALLIVDSATGLY-RTEYSG-RGE-LAARQMHL-GRFLRMLLRLADEHGVAVVITNQ 269

Query: 203 MRMKI---GVMFGSPETTT-GGNALKFYSSVRLDIRR 235
           +  ++     MFG  +    GG+ +   S+ RL +R+
Sbjct: 270 VVAQVDGAASMFGGDQKKPIGGHIIAHASTTRLYLRK 306


>gi|159026758|emb|CAO86639.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 506

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 35/74 (47%), Gaps = 4/74 (5%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
           +Q +  E IE + +G  G D  L  GG PKGR   I G   S KT  A   +A+  K G 
Sbjct: 2   TQNNPLELIEKLETGIPGFDF-LSEGGLPKGRATLIAGTAGSAKTVFACQFLAEGIKNGE 60

Query: 97  TCAFVDAE---HAL 107
              FV  E   HAL
Sbjct: 61  NGVFVTFEEPPHAL 74


>gi|37955140|gb|AAP76377.1| RecA [Proteus mirabilis]
          Length = 45

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 31/42 (73%), Gaps = 2/42 (4%)

Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGS 52
          +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GS
Sbjct: 6  NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--NVETISTGS 45


>gi|312090474|ref|XP_003146628.1| rad51 [Loa loa]
 gi|307758208|gb|EFO17442.1| rad51 [Loa loa]
          Length = 360

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 92/220 (41%), Gaps = 48/220 (21%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           +++GS  LD  LG GG   G I EI+G   +GK+ L  HT+A   +         G C +
Sbjct: 122 IATGSRELDRLLG-GGVETGSITEIFGEFRTGKSQLC-HTLAVMCQLPVDMGGAEGKCLW 179

Query: 101 VDAE--------------HALDS-------IYARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E              H L S       +YAR    D +  L+ Q            M
Sbjct: 180 IDTEGTFRPERLLAIAERHKLSSQDVLDNVVYARCHNTDHQMQLLIQGSA---------M 230

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           +  S    ++V+DS  AL  R +  G  GE L   Q  ++++ LR L          +V 
Sbjct: 231 MAESRYA-LLVVDSATALF-RTDYSG-RGE-LASRQT-MLAKYLRMLLKLSDEFGVAVVI 285

Query: 200 INQMRMKI----GVMFGSPETTTGGNALKFYSSVRLDIRR 235
            NQ+  ++    G+  G  +   GGN +   S+ RL +R+
Sbjct: 286 TNQVVSQVDGGCGMFQGETKKPIGGNIMAHASTTRLYLRK 325


>gi|298675622|ref|YP_003727372.1| putative circadian clock protein KaiC [Methanohalobium evestigatum
           Z-7303]
 gi|298288610|gb|ADI74576.1| putative circadian clock protein, KaiC [Methanohalobium evestigatum
           Z-7303]
          Length = 295

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 31/138 (22%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV-- 101
            I+ + +G   LD +L  GG PKG  V + GP  +GKTT  +  + +  +    C F   
Sbjct: 58  NIKRMGTGIPSLDDSLE-GGIPKGFSVIVTGPPGTGKTTFCVQILMERIRNNEKCVFFSF 116

Query: 102 --DAEH--------------ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             DAEH              A+D  Y    G+ +         T E+  +I D    S  
Sbjct: 117 EEDAEHLVQQFMRYGWDIGEAIDKGYLEIFGMSII--------TSEEMTQIVD----SYR 164

Query: 146 VDIIVIDSVAALTPRAEI 163
            D++V DS+   +   E 
Sbjct: 165 PDVVVFDSLNVFSNPEEF 182


>gi|269987018|gb|EEZ93293.1| conserved hypothetical protein [Candidatus Parvarchaeum acidiphilum
           ARMAN-4]
          Length = 231

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 22/100 (22%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E V SG +G D A+  GGF K  ++ IYG   +GK+      + +  K      ++  E
Sbjct: 2   VERVKSGVIGFD-AIANGGFVKNSLIAIYGSPGAGKSIFCTEFLREGLKNNEKVFYISME 60

Query: 105 HALDS---------------------IYARKLGVDLKNLL 123
             +DS                     +++R  G D KN L
Sbjct: 61  QDIDSFLEQCDSFGFSEFKENLNSNFVFSRMTGHDFKNFL 100


>gi|150865083|ref|XP_001384154.2| hypothetical protein PICST_58642 [Scheffersomyces stipitis CBS
           6054]
 gi|149386339|gb|ABN66125.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 541

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 22/142 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC--------- 98
           +S+G   LD  LG GG P G I EI+G    GK+ +      + Q   G C         
Sbjct: 88  ISTGLHTLDSDLG-GGIPTGEITEIFGSSGCGKSHMLAQLAMECQLNEGDCKECIHIGTE 146

Query: 99  AFVDAE--HALDSIYARK---LGVDLKNLLISQPDTGEQALEITDMLV----RSGAVDII 149
           +F++ +  H +   Y  K   + +D  + +  Q    +  +  T + +    ++G V ++
Sbjct: 147 SFLETKRLHQIQQSYESKGSTVSLDNISYIYCQDLESQDHIIYTQLPIHLESKAGKVRLL 206

Query: 150 VIDSVAALTPRAEIEGDMGESL 171
           VIDS+A    R   EG +  S+
Sbjct: 207 VIDSIAQHLRR---EGSLSNSM 225


>gi|169843884|ref|XP_001828666.1| Rah1 [Coprinopsis cinerea okayama7#130]
 gi|3237296|gb|AAC23703.1| Rah1 [Coprinopsis cinerea]
 gi|116510275|gb|EAU93170.1| Rah1 [Coprinopsis cinerea okayama7#130]
          Length = 343

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 100/243 (41%), Gaps = 34/243 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  LG GG   G I E++G   +GK+ +  HT+A + +         G C +
Sbjct: 103 ITTGSKQLDALLG-GGIETGAITELFGEFRTGKSQIC-HTLAVTCQLPVSMGGGEGKCLY 160

Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQ---PDTGEQALEITDMLVRSGAVDII 149
           +D E     +     A + G++    L N+  ++    D  +  L     L+      ++
Sbjct: 161 IDTEGTFRPVRLLAVAERFGLNGEEVLDNVAYARAYNADHQQALLTSASALMSESRFCLL 220

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR----M 205
           ++DS  AL  R +  G  GE L   Q  L  + LR L          +V  NQ+      
Sbjct: 221 IVDSCTALY-RTDFSG-RGE-LSSRQTHL-GKFLRTLQRLADEFGIAVVVTNQVMSTPDA 276

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
             G   G+ +   GGN +   S+ RL ++      R   I D   +  ++T   ++   +
Sbjct: 277 APGPYAGNEKKPIGGNIMAHASTTRLQLKKGRGNTRACKIYDSPCLPESETTFAILPGGI 336

Query: 260 ASP 262
             P
Sbjct: 337 GDP 339


>gi|254172470|ref|ZP_04879145.1| circadian clock protein kinase KaiC, putative [Thermococcus sp.
           AM4]
 gi|214033399|gb|EEB74226.1| circadian clock protein kinase KaiC, putative [Thermococcus sp.
           AM4]
          Length = 234

 Score = 40.8 bits (94), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+G  GLD  LG GG   GR   + GP  +GKT LA+H      + G    +V  E
Sbjct: 2   VERISTGIPGLDEMLG-GGLIAGRAYLVEGPPGAGKTILAMHFAMAGVERGENALYVTLE 60

Query: 105 HALDSI 110
              D +
Sbjct: 61  EPADQL 66


>gi|219850727|ref|YP_002465159.1| DNA repair and recombination protein RadA [Methanosphaerula
           palustris E1-9c]
 gi|219544986|gb|ACL15436.1| DNA repair and recombination protein RadA [Methanosphaerula
           palustris E1-9c]
          Length = 327

 Score = 40.8 bits (94), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 80/202 (39%), Gaps = 32/202 (15%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHAL--DSIYAR 113
           GG     I E+YG   SGK+ +       +Q         G+  ++D E+    + I   
Sbjct: 97  GGVETQAITEVYGEFGSGKSQIVHQMAVNAQLPESVGGLNGSAIYIDTENTFRPERIEQM 156

Query: 114 KLGVD------------LKNLLISQPDTGEQALEITDMLVRSGA--------VDIIVIDS 153
             G+D            L N+ +++  T +  + + D      A        V I +IDS
Sbjct: 157 VAGLDFPELELPSFEEFLNNIHVARAHTSDHQMLLIDTARELAAELKNSDHPVKIFIIDS 216

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           + A   RAE  G    +L   Q +L ++ + +    I     + +  NQ+     V FG 
Sbjct: 217 LTAHF-RAEYAGRG--TLATRQQKL-NRHMHEFFKLIDEHNAVGLVTNQVMSNPAVFFGD 272

Query: 214 PETTTGGNALKFYSSVRLDIRR 235
           P    GGN +   ++ RL +R+
Sbjct: 273 PTKPIGGNIVGHTATFRLYLRK 294


>gi|321265185|ref|XP_003197309.1| meiotic recombination-related protein [Cryptococcus gattii WM276]
 gi|317463788|gb|ADV25522.1| Meiotic recombination-related protein, putative [Cryptococcus
           gattii WM276]
          Length = 308

 Score = 40.8 bits (94), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 93/211 (44%), Gaps = 29/211 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  +D  LG GG     I E++G   +GKT L  HT+  S +         G  A+
Sbjct: 70  ITTGSKSVDAMLG-GGIATQSITEVFGEYRTGKTQLC-HTLCVSTQLPEDQGGGSGKVAY 127

Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALE-ITDMLVR---SGAVDI 148
           +D E        R    + GVD    L N+L ++  + E   + + D+ +R     A  +
Sbjct: 128 IDTEGTFRPDRVRAVADRFGVDSNMALDNVLCARAWSSEHQCDLLVDLAIRFVEERAYKL 187

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +++DS+  L  R +  G  GE L   Q +L +Q L +L          +V  NQ++   G
Sbjct: 188 LIVDSIMNLF-RQDYSG-RGE-LSERQQKL-NQFLARLQKLAEEFNIAVVLTNQVQADPG 243

Query: 209 VMFGSPETT----TGGNALKFYSSVRLDIRR 235
                   +     GG+ L   S+ R+ +R+
Sbjct: 244 AAAMFAAASSAKPVGGHILAHASATRIALRK 274


>gi|146092913|ref|XP_001466568.1| hypothetical protein [Leishmania infantum]
 gi|134070931|emb|CAM69607.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 649

 Score = 40.8 bits (94), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
            S+G +GLD ALG GGF  G + E+YG   +GKT
Sbjct: 280 CSTGCMGLDQALGGGGFRSGWVTEVYGEAGAGKT 313


>gi|14595977|gb|AAK68858.1| DNA repair protein [Nosema bombycis]
          Length = 333

 Score = 40.8 bits (94), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 88/212 (41%), Gaps = 32/212 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           +S+GS  LD  L  GG   G I EI+G   +GKT +  HT+A + +         G   +
Sbjct: 95  LSTGSSELDKLLN-GGIESGSITEIFGEFRTGKTQIC-HTVAVTCQLPPEQGGANGKALY 152

Query: 101 VDAEHALDS----IYARKLGVDLKNLL-------ISQPDTGEQALEITDMLVRSGAVDII 149
           +D E    S      A + G+D   +L           D   Q L     L+      ++
Sbjct: 153 IDTEGTFRSERFFPIAERYGLDPTEVLDNISYARAYNSDHQSQLLIQASSLMSQNKYAVL 212

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMK- 206
           +IDS  AL  R +  G  GE    + AR +S A  LR L +        ++  NQ+    
Sbjct: 213 IIDSATALY-RTDFSG-RGE----LGARQISLARYLRDLVNIAETFHVAVIITNQVVSNP 266

Query: 207 ---IGVMFGSPETTTGGNALKFYSSVRLDIRR 235
              + +  G  +   GGN +   S+ RL +R+
Sbjct: 267 DGAMSMFAGDVKKPIGGNIMAHASTTRLSLRK 298


>gi|91773752|ref|YP_566444.1| circadian clock protein KaiC [Methanococcoides burtonii DSM 6242]
 gi|91712767|gb|ABE52694.1| Circadian clock protein kinase KaiC [Methanococcoides burtonii DSM
           6242]
          Length = 454

 Score = 40.8 bits (94), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 24/40 (60%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           GGFPK   + I GP  SGKTTLA+ +I  + +    C +V
Sbjct: 17  GGFPKPSAILIAGPAGSGKTTLAMQSIFSASEKKEVCMYV 56


>gi|319408302|emb|CBI81955.1| DNA repair protein [Bartonella schoenbuchensis R1]
          Length = 458

 Score = 40.8 bits (94), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 14/159 (8%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           +G I+ L S     E    + SG   LD   G GGF +G  + + G    GK+TL   T 
Sbjct: 52  QGRIITLTSLSGDLEDAPRIHSGISELDRVTG-GGFVRGSALLVGGDPGIGKSTLLTQTA 110

Query: 89  AQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           A   + G    +V  E A+  I   A++LG     + ++     E   +I   L     +
Sbjct: 111 AALSRKGYNVIYVSGEEAVAQIRLRAQRLGAHDTTVKLAAETNVE---DILTTLNAHKKL 167

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQAL 183
           D+++IDS+  L        D  +S PG   Q R+ +QA+
Sbjct: 168 DLVIIDSIQTLW------SDAADSAPGSVTQVRISAQAI 200


>gi|73536558|ref|XP_847703.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|321438616|emb|CBZ12375.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 650

 Score = 40.8 bits (94), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
            S+G +GLD ALG GGF  G + E+YG   +GKT
Sbjct: 281 CSTGCMGLDQALGGGGFRSGWVTEVYGEAGAGKT 314


>gi|296121582|ref|YP_003629360.1| hypothetical protein Plim_1327 [Planctomyces limnophilus DSM 3776]
 gi|296013922|gb|ADG67161.1| conserved hypothetical protein [Planctomyces limnophilus DSM 3776]
          Length = 252

 Score = 40.8 bits (94), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 10/145 (6%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           ++N+ D  K     L    R + +GA        S++     + +G   LD      G  
Sbjct: 3   KLNLYDTQKQTIVELQSRIRAWERGA--------SLYS-THYLKTGCGALDTLFPGQGVR 53

Query: 66  KGRIVEIYGP-ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           +G +VE  G   SSG  T++L T  +    G     +D  H L  +    LG DL  L++
Sbjct: 54  QGSLVEWLGDGNSSGAGTVSLITGWRVCPAGRPLVLIDTRHDLFPLSLSLLGFDLSRLIL 113

Query: 125 SQPDTGEQALEITDMLVRSGAVDII 149
            +P +  +AL   +  +R  AV ++
Sbjct: 114 IRPASKREALWACEEALRCEAVGVV 138


>gi|1706446|sp|P50265|DLH1_CANAL RecName: Full=Meiotic recombination protein DLH1; AltName:
           Full=DMC1 homolog
 gi|1145716|gb|AAC49400.1| Dlh1p [Candida albicans]
          Length = 324

 Score = 40.8 bits (94), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 99/211 (46%), Gaps = 30/211 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS   D  LG GG     I E++G    GKT L  HT+  + +         G  A+
Sbjct: 87  ITTGSKQFDEILG-GGIQSMSITEVFGEFRCGKTQLC-HTLCVAAQLPTDMGGGEGRVAY 144

Query: 101 VDAEHAL--DSI--YARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVDII 149
           +D E     D I   A + GVD    L+N+  ++    E  +E+ + L   +  G   ++
Sbjct: 145 IDTEGTFRPDRIRSIAERYGVDADICLENISYARALNSEHQIELVEQLGNELAEGTFRLL 204

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMKIG 208
           ++DS+ A   R +  G  GE L   Q +L +Q L  LT  ++    I VF+ NQ++   G
Sbjct: 205 IVDSIMACF-RVDYSG-RGE-LNERQQKL-NQHLSNLT-RVAEDYNIAVFLTNQVQSDPG 259

Query: 209 --VMFGSPE--TTTGGNALKFYSSVRLDIRR 235
              +F + +     GG+ L   S+ R+ +R+
Sbjct: 260 ASALFAAADGRKPVGGHVLAHASATRILLRK 290


>gi|178056768|ref|NP_001116653.1| DNA repair protein RAD51 homolog 1 [Sus scrofa]
 gi|167600352|gb|ABZ89107.1| Rad51 [Sus scrofa]
 gi|168085455|dbj|BAG09486.1| DNA repair protein RAD51 [Sus scrofa]
          Length = 339

 Score = 40.8 bits (94), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 92/221 (41%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G I E++G   +GKT +  HT+A + +         G   +
Sbjct: 102 ITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQIC-HTLAVTCQLPIDRGGGEGKAMY 159

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E                      LD++ YAR    D +  L+ Q            M
Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASA---------M 210

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           +V S    +++IDS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 211 MVESRYA-LLIIDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 263

Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++    MF + P+   GGN +   S+ RL +R+
Sbjct: 264 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 304


>gi|52548595|gb|AAU82444.1| recombinase [uncultured archaeon GZfos17F1]
          Length = 324

 Score = 40.8 bits (94), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 84/208 (40%), Gaps = 44/208 (21%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQK----TGGTCAFV---------------- 101
           GGF    I E+YG   SGKT +A H +A + +     GG    V                
Sbjct: 95  GGFETQAITEVYGEFGSGKTQIA-HQLAVNVQLPVGLGGLYGSVIIIDTENTFRPDRIKS 153

Query: 102 -------------DAEHALDSIY-ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
                        D E  L +I+ AR    + + LL+        +L  TDM VR     
Sbjct: 154 MVEGAAKRYETEYDPEEFLKNIHVARAYNSNHQILLMDTASELADSLRDTDMPVR----- 208

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++++DS+ A   RAE  G    +L   Q +L ++ L  L      +  ++   NQ+  K 
Sbjct: 209 LLIVDSLTAHF-RAEYVGR--GTLADRQQKL-NKHLHALMRFGDLNNAMVFVTNQVMSKP 264

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
              FG P    GG+ L   S+ RL +R+
Sbjct: 265 DAFFGDPTKPIGGHILGHTSTFRLYLRK 292


>gi|1816461|emb|CAB02454.1| uvsC [Emericella nidulans]
 gi|259488442|tpe|CBF87878.1| TPA: UvsC protein [Source:UniProtKB/TrEMBL;Acc:P78579] [Aspergillus
           nidulans FGSC A4]
          Length = 348

 Score = 40.8 bits (94), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 105/244 (43%), Gaps = 35/244 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  LG GG   G I EI+G   +GK+ +  HT+A + +         G C +
Sbjct: 103 ITTGSKQLDTLLG-GGIETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 160

Query: 101 VDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDII 149
           +D E     +     A++ G+     L N+  ++    +  L++ +    ++      ++
Sbjct: 161 IDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 220

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           V+DS  +L  R +  G  GE L   Q  L ++ +R L          +V  NQ+  ++  
Sbjct: 221 VVDSATSLY-RTDFNG-RGE-LSTRQTHL-AKFMRTLQRLADEFGIAVVITNQVVAQVDG 276

Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               MF   P+   GGN +   S+ RL ++      RV  I D   +  +     + ++ 
Sbjct: 277 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRVCKIYDSPCLPESDCLFAINEDG 336

Query: 259 MASP 262
           +  P
Sbjct: 337 IGDP 340


>gi|255513563|gb|EET89829.1| AAA ATPase [Candidatus Micrarchaeum acidiphilum ARMAN-2]
          Length = 249

 Score = 40.8 bits (94), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 21/139 (15%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           +  +E + +G  G D   G GG P G  V +YG   +GKT   +  + ++ K G    F+
Sbjct: 7   YYPVEFIKTGIPGFDRLCG-GGIPLGSQVLLYGMPGAGKTLFCMELLYRNAKFGIPSVFI 65

Query: 102 DAEHALDSIYARKLGV-----DLKNLL---------------ISQPDTGEQALEITDMLV 141
             E   + +    L V     DL                   I   +  E+ L     ++
Sbjct: 66  STEERKEDLIRNSLEVFSSFEDLDRFFQDKIINVEYLRGIDAIKSREEFEETLSKMGQII 125

Query: 142 RSGAVDIIVIDSVAALTPR 160
           +S    I+V+DSV+ L  R
Sbjct: 126 KSNKAKIVVLDSVSNLRSR 144


>gi|282165652|ref|YP_003358037.1| DNA repair and recombination protein RadA [Methanocella paludicola
           SANAE]
 gi|282157966|dbj|BAI63054.1| DNA repair and recombination protein RadA [Methanocella paludicola
           SANAE]
          Length = 323

 Score = 40.8 bits (94), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 93/215 (43%), Gaps = 33/215 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-------QSQKTGGTCAF 100
           + +GS  LD  LG GG     I E YG   SGKT +A H +A       +    GG+   
Sbjct: 83  LKTGSNALDELLG-GGVETQSITEFYGEFGSGKTQVA-HQLAVKVQLPPEEGGLGGSVIM 140

Query: 101 VDAEHALDS------IYARKLGVDL------KNLLISQPDTG-------EQALEITDMLV 141
           +D E+          +   K G DL      KN+ +++           E A E+ + + 
Sbjct: 141 IDTENTFRPERIAQMVKGLKGGEDLDPEEFLKNIHVARAYNSNHQILLVESASELAEKMR 200

Query: 142 RSG-AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            S   V +I++DS+ A   R+E  G    +L   Q +L ++ +  L      +   +V  
Sbjct: 201 DSDRPVKLIIVDSLTAHF-RSEYVGRG--TLADRQQKL-NKHMHDLMRFGDINNAAIVVT 256

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           NQ++ K    FG P    GG+ +   ++ RL +R+
Sbjct: 257 NQVQAKPDAFFGDPTRPIGGHIVGHTATFRLYLRK 291


>gi|187250810|ref|YP_001875292.1| DNA repair protein RadA [Elusimicrobium minutum Pei191]
 gi|186970970|gb|ACC97955.1| DNA repair protein RadA [Elusimicrobium minutum Pei191]
          Length = 454

 Score = 40.8 bits (94), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 8/102 (7%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113
           LD  LG GG  KG+++ + G    GK+TL L T A   K G    ++  E +L+ I +R 
Sbjct: 78  LDRLLG-GGIVKGQLILLAGAPGIGKSTLMLQTAASLSK-GKKVLYISGEESLNQISSRA 135

Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
            +LGV+ KN+ +      +  +E  D +      ++++IDS+
Sbjct: 136 LRLGVEGKNIFLLSETNMQNIIEALDKV----KPEVLIIDSI 173


>gi|322500693|emb|CBZ35770.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 649

 Score = 40.8 bits (94), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
            S+G +GLD ALG GGF  G + E+YG   +GKT
Sbjct: 280 CSTGCMGLDQALGGGGFRSGWVTEVYGEAGAGKT 313


>gi|119483016|ref|XP_001261536.1| hypothetical protein NFIA_027130 [Neosartorya fischeri NRRL 181]
 gi|119409691|gb|EAW19639.1| hypothetical protein NFIA_027130 [Neosartorya fischeri NRRL 181]
          Length = 385

 Score = 40.8 bits (94), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 7/71 (9%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG P G + E++GP   GKT LA+   A +   G    ++D    L  +        LK
Sbjct: 66  LGGIPCGHVTEVFGPPGVGKTALAMSITANALCDGSKVVWIDTTSPLPKLR-------LK 118

Query: 121 NLLISQPDTGE 131
           ++L+   DT +
Sbjct: 119 SMLMQNLDTAK 129


>gi|67594825|ref|XP_665902.1| Rad51 [Cryptosporidium hominis TU502]
 gi|54656768|gb|EAL35671.1| Rad51 [Cryptosporidium hominis]
          Length = 347

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 91/218 (41%), Gaps = 47/218 (21%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS------QKTG-GTCAFV 101
           ++GS  LD  L  GG   G I EI+G   +GKT L  HT+A +       K G G C ++
Sbjct: 109 TTGSSQLDRLLQ-GGIETGSITEIFGEFRTGKTQLC-HTLAVTCQLPVEHKGGEGKCLWI 166

Query: 102 DAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDML 140
           D E                      LD+I YAR    +       Q D  + A+     +
Sbjct: 167 DTEGTFRPERIVQIADRFNLNASDCLDNIAYARGFNTE------HQMDLLQSAV----AM 216

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +      ++++DS  AL  R+E  G  GE L   Q+ L  Q LR L          +V  
Sbjct: 217 MTESRFALMIVDSATALY-RSEYNG-RGE-LATRQSHL-GQFLRALQKIADTFGVAVVIT 272

Query: 201 NQMRMKI---GVMFGSPETTTGGNALKFYSSVRLDIRR 235
           NQ+  K+     MF + +   GGN +   S  RL +++
Sbjct: 273 NQVMSKVDAMAAMFQNDKVPIGGNIIAHASQTRLFLKK 310


>gi|66357650|ref|XP_626003.1| Rad51 [Cryptosporidium parvum Iowa II]
 gi|46227223|gb|EAK88173.1| Rad51 [Cryptosporidium parvum Iowa II]
          Length = 347

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 91/218 (41%), Gaps = 47/218 (21%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS------QKTG-GTCAFV 101
           ++GS  LD  L  GG   G I EI+G   +GKT L  HT+A +       K G G C ++
Sbjct: 109 TTGSSQLDRLLQ-GGIETGSITEIFGEFRTGKTQLC-HTLAVTCQLPVEHKGGEGKCLWI 166

Query: 102 DAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDML 140
           D E                      LD+I YAR    +       Q D  + A+     +
Sbjct: 167 DTEGTFRPERIVQIADRFNLNASDCLDNIAYARGFNTE------HQMDLLQSAV----AM 216

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +      ++++DS  AL  R+E  G  GE L   Q+ L  Q LR L          +V  
Sbjct: 217 MTESRFALMIVDSATALY-RSEYNG-RGE-LATRQSHL-GQFLRALQKIADTFGVAVVIT 272

Query: 201 NQMRMKI---GVMFGSPETTTGGNALKFYSSVRLDIRR 235
           NQ+  K+     MF + +   GGN +   S  RL +++
Sbjct: 273 NQVMSKVDAMAAMFQNDKVPIGGNIIAHASQTRLFLKK 310


>gi|255940094|ref|XP_002560816.1| Pc16g04650 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585439|emb|CAP93135.1| Pc16g04650 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 344

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 95/211 (45%), Gaps = 29/211 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  LG GG   G I EI+G   +GK+ +  HT+A + +         G C +
Sbjct: 99  ITTGSKRLDTLLG-GGVETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 156

Query: 101 VDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDII 149
           +D E     +     A++ G+     L N+  ++    +  L++ +    ++      ++
Sbjct: 157 IDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 216

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           V+DS  +L  R +  G  GE L   Q  L ++ +R L          +V  NQ+  ++  
Sbjct: 217 VVDSATSLY-RTDFNG-RGE-LASRQTHL-AKFMRTLQRLADEFGIAVVITNQVVAQVDG 272

Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
               MF   P+   GGN +   S+ RL +++
Sbjct: 273 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKK 303


>gi|299742147|ref|XP_001832284.2| hypothetical protein CC1G_02546 [Coprinopsis cinerea okayama7#130]
 gi|298405051|gb|EAU89657.2| hypothetical protein CC1G_02546 [Coprinopsis cinerea okayama7#130]
          Length = 315

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G  GLD  LG GG  +G I+E+ GP  S K  +A + I +  K G +   VD ++++D
Sbjct: 83  STGCSGLDKILG-GGLQRGHILELSGPPGSPKELIARNLIIEFAKLGHSVILVDCQNSID 141


>gi|125578475|gb|EAZ19621.1| hypothetical protein OsJ_35197 [Oryza sativa Japonica Group]
          Length = 348

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 26/208 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  LD  LG GG     I E +G   SGKT LA HT+  S +         G  A+
Sbjct: 108 ITTGSQALDKLLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSAQLPIHMHGGNGKVAY 165

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149
           +D E           A + G+D    L N++ ++  T E    +   L    A +   ++
Sbjct: 166 IDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLL 225

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           ++DSV AL  R +  G  GE L   Q +L +Q L +LT         +   NQ+      
Sbjct: 226 IVDSVIALF-RVDFSGR-GE-LAERQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
           G+     +   GG+ L   +++RL +R+
Sbjct: 282 GMFITDLKKPAGGHVLAHAATIRLMLRK 309


>gi|68071341|ref|XP_677584.1| Rad51 [Plasmodium berghei strain ANKA]
 gi|56497754|emb|CAH95058.1| Rad51 homolog, putative [Plasmodium berghei]
          Length = 349

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 98/211 (46%), Gaps = 33/211 (15%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-----QKTG--GTCAFV 101
           ++GS  LD AL  GG   G I E++G   +GK+ L  HT+A +     +++G  G C ++
Sbjct: 112 TTGSKQLD-ALLKGGIETGGITELFGEFRTGKSQLC-HTLAITCQLPIEQSGGEGKCLWI 169

Query: 102 DAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------D 147
           D E           A++ G+     L N+  ++    +     T++L+ + A+       
Sbjct: 170 DTEGTFRPERIVAIAKRYGLHPTDCLNNIAYAKAYNCDHQ---TELLIDASAMMADTRFA 226

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++++DS  AL  R+E  G  GE L   Q+ L  + LR L          ++  NQ+  K+
Sbjct: 227 LLIVDSATALY-RSEYTG-RGE-LANRQSHL-CRFLRGLQRIADIYGVAVIITNQVVAKV 282

Query: 208 GV--MFGSPET-TTGGNALKFYSSVRLDIRR 235
               MFG  E    GGN +   S  RL +R+
Sbjct: 283 DAMSMFGGHEKIPIGGNIIAHASQTRLYLRK 313


>gi|70939108|ref|XP_740140.1| Rad51 [Plasmodium chabaudi chabaudi]
 gi|56517647|emb|CAH76360.1| Rad51 homolog, putative [Plasmodium chabaudi chabaudi]
          Length = 324

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 98/211 (46%), Gaps = 33/211 (15%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-----QKTG--GTCAFV 101
           ++GS  LD AL  GG   G I E++G   +GK+ L  HT+A +     +++G  G C ++
Sbjct: 112 TTGSKQLD-ALLKGGIETGGITELFGEFRTGKSQLC-HTLAITCQLPIEQSGGEGKCLWI 169

Query: 102 DAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------D 147
           D E           A++ G+     L N+  ++    +     T++L+ + A+       
Sbjct: 170 DTEGTFRPERIVAIAKRYGLHPTDCLNNIAYAKAYNCDHQ---TELLIDASAMMADTRFA 226

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++++DS  AL  R+E  G  GE L   Q+ L  + LR L          ++  NQ+  K+
Sbjct: 227 LLIVDSATALY-RSEYTG-RGE-LANRQSHL-CRFLRGLQRIADIYGVAVIITNQVVAKV 282

Query: 208 GV--MFGSPET-TTGGNALKFYSSVRLDIRR 235
               MFG  E    GGN +   S  RL +R+
Sbjct: 283 DAMSMFGGHEKLPIGGNIIAHASQTRLYLRK 313


>gi|156084788|ref|XP_001609877.1| Rad51 protein [Babesia bovis T2Bo]
 gi|154797129|gb|EDO06309.1| Rad51 protein, putative [Babesia bovis]
          Length = 346

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 111/255 (43%), Gaps = 54/255 (21%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS------QKTG-GTCAFV 101
           ++GS  LD AL  GG   G I EI G  S+GKT L  HT+A +      Q  G G C ++
Sbjct: 106 TTGSTALD-ALLQGGIESGSITEIIGDFSTGKTQLC-HTLAITSQLPIEQNGGEGKCLWI 163

Query: 102 DAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGA------VD 147
           D +++         A + G+     + N++  +    EQ     DMLV +          
Sbjct: 164 DTQNSFRPERLGPIANRFGLSHAECVANIVYVKVSNTEQQF---DMLVEAAHYMAQSRFA 220

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMS-----QALRKLTSSISRSKCILVFINQ 202
           ++++DS  AL  R +  G  GE    + AR MS     +AL++L      +   +V  NQ
Sbjct: 221 MLIVDSATALY-RTDYTG-RGE----LAARQMSLGKYFRALKRLADIYGVA---VVVTNQ 271

Query: 203 MRMKI----GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           +  ++      M G+ +   GG+ +   +  RL +R+           GN +RV  V N 
Sbjct: 272 VMARVDNMSSFMGGNDKVPVGGHVVAQNTQTRLFLRKA---------RGN-SRVCKVYNS 321

Query: 259 MASPFKQVEFDIMYG 273
            + P  +  F I  G
Sbjct: 322 PSLPEGEAVFAIAEG 336


>gi|322488742|emb|CBZ23989.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 649

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
            S+G +GLD ALG GGF  G + E+YG   +GKT
Sbjct: 280 CSTGCMGLDQALGGGGFRSGWVTEVYGEAGAGKT 313


>gi|67521554|ref|XP_658841.1| hypothetical protein AN1237.2 [Aspergillus nidulans FGSC A4]
 gi|9904315|gb|AAB39323.2| ARECA [Emericella nidulans]
 gi|40746674|gb|EAA65830.1| hypothetical protein AN1237.2 [Aspergillus nidulans FGSC A4]
          Length = 344

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 105/244 (43%), Gaps = 35/244 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  LG GG   G I EI+G   +GK+ +  HT+A + +         G C +
Sbjct: 99  ITTGSKQLDTLLG-GGIETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 156

Query: 101 VDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDII 149
           +D E     +     A++ G+     L N+  ++    +  L++ +    ++      ++
Sbjct: 157 IDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 216

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           V+DS  +L  R +  G  GE L   Q  L ++ +R L          +V  NQ+  ++  
Sbjct: 217 VVDSATSLY-RTDFNG-RGE-LSTRQTHL-AKFMRTLQRLADEFGIAVVITNQVVAQVDG 272

Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               MF   P+   GGN +   S+ RL ++      RV  I D   +  +     + ++ 
Sbjct: 273 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRVCKIYDSPCLPESDCLFAINEDG 332

Query: 259 MASP 262
           +  P
Sbjct: 333 IGDP 336


>gi|255515484|ref|ZP_05383160.1| DNA repair protein RadA [Clostridium difficile QCD-97b34]
          Length = 428

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 7/105 (6%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YA 112
           LD  LG GG  KG +V + G    GK+TL +   +     G T  ++  E +   I   A
Sbjct: 48  LDRVLG-GGIVKGSLVLVGGDPGIGKSTLLIQVSSNVANLGKTVLYITGEESESQIKMRA 106

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           ++LG++ +NL I      E  L I +  + S   ++I++DS+  +
Sbjct: 107 KRLGINSENLYI----FAENNLSIIESYLESVNPELIILDSIQTV 147


>gi|209875975|ref|XP_002139430.1| Rad51 protein [Cryptosporidium muris RN66]
 gi|209555036|gb|EEA05081.1| Rad51 protein, putative [Cryptosporidium muris RN66]
          Length = 351

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 101/251 (40%), Gaps = 53/251 (21%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-----QKTG--GTCAFV 101
           ++GS  LD  L  GG   G I EI+G   +GKT L  HT+A +     +  G  G C ++
Sbjct: 112 TTGSKQLDRLLQ-GGIETGNITEIFGEFRTGKTQLC-HTLAVTCQLPVEHNGGEGKCLWI 169

Query: 102 DAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDML 140
           D E                      LD+I YAR    +       Q D  + A+     +
Sbjct: 170 DTEGTFRPERIVQIAERFSLNASDCLDNIAYARGFNTE------HQMDLLQSAV----AM 219

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +      ++++DS  AL  R+E  G  GE L   Q+ L  Q LR L          ++  
Sbjct: 220 MSESRFALMIVDSATALY-RSEYNG-RGE-LASRQSHL-GQFLRGLQKIADTFGVAVIIT 275

Query: 201 NQMRMKIGVM---FGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTR 251
           NQ+  K+  M   F + +   GGN +   S  RL ++      R+  I D  ++    T 
Sbjct: 276 NQVMSKVDAMAAIFQNDKVPIGGNIIAHASQTRLYLKKGRAETRICKIYDSPNLPEGDTA 335

Query: 252 VKVVKNKMASP 262
             + +  +  P
Sbjct: 336 FAITEGGINDP 346


>gi|70982368|ref|XP_746712.1| meiotic recombination protein (Dmc1) [Aspergillus fumigatus Af293]
 gi|66844336|gb|EAL84674.1| meiotic recombination protein (Dmc1), putative [Aspergillus
           fumigatus Af293]
 gi|159123045|gb|EDP48165.1| meiotic recombination protein (Dmc1), putative [Aspergillus
           fumigatus A1163]
          Length = 338

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 97/222 (43%), Gaps = 34/222 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQK----TGGTCAF 100
           +S+GS   D  LG GGF    I E++G    GKT L+ HT   +AQ  K      G  A+
Sbjct: 99  ISTGSKQFDSILG-GGFQSMSISEVFGEFRCGKTQLS-HTMSVVAQLPKEMGGADGKVAY 156

Query: 101 VDAEHALD----SIYARKLGVDL----KNLLISQPDTGEQALEITDMLVRS---GAVDII 149
           +D E        +  A +  VD     +N+  ++    E  LE+ + L R    G   ++
Sbjct: 157 IDTEGTFRPERIAQIAERFSVDPDSAQENIAYARALNSEHQLELLNTLSREFAGGEYRLL 216

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           +IDS+     R +  G  GE L   Q +L +Q L +L          ++  NQ++   G 
Sbjct: 217 IIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMRLAHMAEEFNVCVLMTNQVQSDPGA 272

Query: 209 -VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241
             +F   +     GG+ L   S+ R+ +R      RV  I+D
Sbjct: 273 SALFAGADGRKPVGGHVLAHASTTRVLLRKGRGEERVAKIQD 314


>gi|212542819|ref|XP_002151564.1| DNA repair protein RAD51, putative [Penicillium marneffei ATCC
           18224]
 gi|111380646|gb|ABH09700.1| RAD51-like protein [Penicillium marneffei]
 gi|210066471|gb|EEA20564.1| DNA repair protein RAD51, putative [Penicillium marneffei ATCC
           18224]
          Length = 349

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 94/211 (44%), Gaps = 29/211 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G I EI+G   +GK+ L  HT+A + +         G C +
Sbjct: 104 ITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQLC-HTLAVTCQLPFDMGGGEGKCLY 161

Query: 101 VDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDII 149
           +D E     +     A++ G+     L N+  ++    +  L++ +    ++      ++
Sbjct: 162 IDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 221

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           ++DS  AL  R +  G  GE L   Q  L ++ LR L          +V  NQ+  ++  
Sbjct: 222 IVDSATALY-RTDFNG-RGE-LSNRQTHL-AKFLRTLQRLADEFGIAVVITNQVVSQVDG 277

Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
               MF   P+   GGN +   S+ RL +++
Sbjct: 278 GPSSMFNPDPKKPIGGNIIAHASTTRLSLKK 308


>gi|332020430|gb|EGI60850.1| DNA repair protein RAD51-like protein 1 [Acromyrmex echinatior]
          Length = 340

 Score = 40.4 bits (93), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 103/244 (42%), Gaps = 31/244 (12%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFE---GIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           EA   ++Q    K  +M   S   + +    I  +++GS  LD  LG GG   G I EI+
Sbjct: 68  EAKADKLQLEASKMVMMGFKSATEVHQTRANIVYITTGSKELDKLLG-GGIETGSITEIF 126

Query: 74  GPESSGKTTLALHTIAQSQK-------TGGTCAFVDAEHALDS----IYARKLGVD---- 118
           G   SGK+ L  HT+A + +         G C ++D E+          A K  ++    
Sbjct: 127 GEFRSGKSQLC-HTLAVNCQLPISMGGAEGKCLYIDTENTFRPERLIAVAEKYKINGQSV 185

Query: 119 LKNLLISQP---DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           L N+  ++    D   + L +   ++      ++++DS   L  R +  G  GE L   Q
Sbjct: 186 LDNVACARAFNTDHQTKLLLLASAMMTEARYALLIVDSATGLY-RTDYTG-RGE-LSARQ 242

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKI---GVMFGSPETTT-GGNALKFYSSVRL 231
             L  + LR L          +V  NQ+  ++     MFG  +    GG+ L   S+ RL
Sbjct: 243 VHL-GRFLRMLLRLADEHGIAVVITNQVVAQVDGAASMFGGDQKKPIGGHILAHSSTTRL 301

Query: 232 DIRR 235
            +R+
Sbjct: 302 YLRK 305


>gi|254507580|ref|ZP_05119713.1| RecA/RadA recombinase [Vibrio parahaemolyticus 16]
 gi|219549467|gb|EED26459.1| RecA/RadA recombinase [Vibrio parahaemolyticus 16]
          Length = 225

 Score = 40.4 bits (93), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 1/90 (1%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GGFPK  +VE+  P+  G+  L +  + Q+ +      F+     L + +    G+D   
Sbjct: 40  GGFPKHGVVELQSPQGIGELRLLIPHLQQTSQE-RLAVFIQPPGYLCAQHLASQGIDCNK 98

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVI 151
            L+  P + ++AL   +  +RSGA   +++
Sbjct: 99  ALLIYPKSQKEALWAAEQCLRSGACSNVLL 128


>gi|307596612|ref|YP_003902929.1| DNA repair and recombination protein RadA [Vulcanisaeta distributa
           DSM 14429]
 gi|307551813|gb|ADN51878.1| DNA repair and recombination protein RadA [Vulcanisaeta distributa
           DSM 14429]
          Length = 388

 Score = 40.4 bits (93), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 110/244 (45%), Gaps = 32/244 (13%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA--LHTIAQ-SQKTGGTCA- 99
           GI  +S+G   LD  LG GG     I E+ G   SGKT L   L  + Q  +  GG  A 
Sbjct: 153 GIRRISTGVKSLDELLG-GGIETKAITELVGEFGSGKTQLCHQLSVMVQLPEDKGGLKAK 211

Query: 100 --FVDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAV 146
             +VD E+          A+  G+D    LKN+L ++    +  + I +    ++    +
Sbjct: 212 ALYVDTENTFRPERIMQMAKYRGLDPQEALKNILYARAYNSDHQMMIIEESKKIIEKENI 271

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            +IVIDS+ A   R+E  G   E+L   Q +L +  + +L          +V  NQ+  +
Sbjct: 272 GLIVIDSLVAHF-RSEYPGR--ENLAERQQKL-NHHIAQLLRIADIYNVAVVVTNQVVAQ 327

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
             V FG+P    GGN +   ++ R+ +R     K K+++     R+  + +    P ++V
Sbjct: 328 PDVFFGNPLKPAGGNVIAHGATYRVWLR-----KGKENV-----RIAKIFDSPYHPEREV 377

Query: 267 EFDI 270
            F I
Sbjct: 378 TFRI 381


>gi|195505060|ref|XP_002099346.1| GE23416 [Drosophila yakuba]
 gi|194185447|gb|EDW99058.1| GE23416 [Drosophila yakuba]
          Length = 335

 Score = 40.4 bits (93), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 92/211 (43%), Gaps = 32/211 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GTCAF 100
           +S+GS  LD  LG GG   G I EI+G    GKT L  HT+A       SQK G G C +
Sbjct: 98  LSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLC-HTLAVTCQLPISQKGGEGKCMY 155

Query: 101 VDAEH--------ALDSIYARKLGVDLKNLLISQPDTGEQALEITDM---LVRSGAVDII 149
           +D E+        A+   Y       L N+  ++    +Q  ++  M   ++      ++
Sbjct: 156 IDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGMLFESRYALL 215

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           ++DS  AL  R++  G  GE L   Q  L    LR L          +V  NQ+   +  
Sbjct: 216 IVDSAMALY-RSDYIGR-GE-LAARQNHL-GLFLRMLQRLADEFGVAVVITNQVTASLD- 270

Query: 210 MFGSP-----ETTTGGNALKFYSSVRLDIRR 235
             G+P     +   GG+ +   S+ RL +R+
Sbjct: 271 --GAPGMFDAKKPIGGHIMAHSSTTRLYLRK 299


>gi|18857701|emb|CAD23442.1| putative RAD1 protein [Pleurotus ostreatus]
          Length = 340

 Score = 40.4 bits (93), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 101/243 (41%), Gaps = 34/243 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++G   LD  LG GG   G I E++G   +GK+ +  HT+A + +         G C +
Sbjct: 100 ITTGXKQLDALLG-GGIETGAITEMFGEFRTGKSQIC-HTLAVTCQLPVSMGGGEGKCLY 157

Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQ---PDTGEQALEITDMLVRSGAVDII 149
           +D E     +     A + G++    L N+  ++    D   Q L     L+      ++
Sbjct: 158 IDTEGTFRPVRLLAVAERYGLNGEEVLDNVAYARAYNADHQNQLLTSATRLMSESRFCLL 217

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR----M 205
           ++DS  AL  R +  G  GE L   Q  L  + LR L          +V  NQ+      
Sbjct: 218 IVDSCTALY-RTDFSG-RGE-LSSRQNHL-GKFLRTLQRLADEFGIAVVITNQVMSNPDA 273

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
             G   G+ +   GGN +   S+ RL ++      R   I D   +   +T+  ++++ +
Sbjct: 274 AAGPYAGNEKKPIGGNIMAHASTTRLQLKKGRGTTRTCKIYDSPCLPEMETQFAILQSGI 333

Query: 260 ASP 262
             P
Sbjct: 334 GDP 336


>gi|55379512|ref|YP_137362.1| hypothetical protein rrnAC2917 [Haloarcula marismortui ATCC 43049]
 gi|55232237|gb|AAV47656.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 237

 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 45/113 (39%), Gaps = 5/113 (4%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +SSG  G D  L  GG    R+  + GP  SGKTT     I Q  K G TC +V      
Sbjct: 12  LSSGVPGFD-ELIEGGLLPNRLYVVSGPPGSGKTTFCSQFITQGVKEGETCLYVTMHETK 70

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
             +     G D       Q D    A++  +++  SG   I    +   LT R
Sbjct: 71  TELMQDMAGYDFGFDRAMQSD----AIQFLNLVTESGKRTITQFGNEGGLTNR 119


>gi|307212541|gb|EFN88264.1| DNA repair protein RAD51-like protein 1 [Harpegnathos saltator]
          Length = 340

 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 118/263 (44%), Gaps = 47/263 (17%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK------- 93
           I   I  +++GS  LD  LG GG   G I E++G   SGK+ L  HT+A + +       
Sbjct: 95  IRANIVYITTGSKELDNLLG-GGIETGSITELFGEFRSGKSQLC-HTLAVNCQLPISMGG 152

Query: 94  TGGTCAFVDAEHA-----LDSIYAR-KLGVD--LKNLLISQP-DTGEQALEITDMLVRSG 144
             G C ++D E+      L ++  R K+  D  L N+  ++  +T  Q    T ++V++ 
Sbjct: 153 AEGRCLYIDTENGFRPERLTAVAERYKISGDSVLDNVACARAFNTDHQ----TQLVVQAS 208

Query: 145 AV------DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           A+       +++IDS  +L  R +  G  GE L   Q  L ++ LR L          +V
Sbjct: 209 AMMTEARYALLIIDSATSLY-RTDYCG-RGE-LSERQQHL-ARFLRMLLRIADEHGIAVV 264

Query: 199 FINQMRMKI---GVMFGSPETTT-GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
             NQ+  ++     MFG  +    GG+ L   S+ RL +R+             +TR+  
Sbjct: 265 ITNQVVAQVDGAASMFGGDQKKPIGGHILAHSSTTRLYLRK----------GRGETRICK 314

Query: 255 VKNKMASPFKQVEFDIMYGEGIS 277
           + +    P  +  F I Y +G+S
Sbjct: 315 IYDSPCLPENEATFAI-YSDGVS 336


>gi|289580973|ref|YP_003479439.1| circadian clock protein, KaiC [Natrialba magadii ATCC 43099]
 gi|289530526|gb|ADD04877.1| putative circadian clock protein, KaiC [Natrialba magadii ATCC
           43099]
          Length = 492

 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VSSG  GLD  L  GGF  GR+  ++G   +GKT L +H + +      T  F+  E + 
Sbjct: 8   VSSGVGGLDDILH-GGFVPGRMYLVHGQPGTGKTLLGMHFLEEGLNDDETVLFIHGEESK 66

Query: 108 DSIYA--RKLGVDLKN 121
           + I A    +G+D+ +
Sbjct: 67  EEIVANGEAVGIDVTD 82



 Score = 36.2 bits (82), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 89/218 (40%), Gaps = 28/218 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           FE I++   G  GLD  +G GGF K  +  I GP  +GKT+     +AQ+ K G   A  
Sbjct: 240 FESIQL-EFGIEGLDELVG-GGFDKRTVTFISGPTGAGKTSTGTQFLAQAAKNGMKSAVY 297

Query: 102 DAEHALDSIYARKLGVDLK--------NLLIS--QPDT--GEQALEITDMLVRSGAVDII 149
             E  +++   R   + +          L I+  +P T  GE+   +    V     DI+
Sbjct: 298 LFEEDMETYEHRSEAIGMPVTTMREEGTLSITEIEPRTLSGEEFAHMVKQEVDERETDIV 357

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           +ID +   T   +   DM           + + L  LT  +      ++  N++    G+
Sbjct: 358 MIDGLDGYTTSIQGNEDM-----------LVRKLHALTRYLKNRGVTVLITNEISEITGI 406

Query: 210 MFGSPETTTG-GNALKFYSSVRLD--IRRVGSIKDKDS 244
              +    +   + L F S V +D  +R+V  +  K S
Sbjct: 407 SNATSNNLSYVADNLLFLSYVEMDGSLRKVVGVLKKRS 444


>gi|188583778|ref|YP_001927223.1| circadian clock protein KaiC [Methylobacterium populi BJ001]
 gi|179347276|gb|ACB82688.1| putative circadian clock protein, KaiC [Methylobacterium populi
           BJ001]
          Length = 567

 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 13/134 (9%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           V+S+G  GLD  L  GGF +G  + I G   +GKT ++   I  +   G  C     E +
Sbjct: 257 VISTGIPGLDAMLEPGGFHRGTSILISGEAGTGKTMISSSMIEAACARGERCMAFVFEES 316

Query: 107 LDSIY--ARKLGVDLKNLLIS---QPDTGEQALEITDMLVRSGAVDI-------IVIDSV 154
            D I   AR +G+DL   + S   + +    +L   +M +     DI       +VID +
Sbjct: 317 GDQIIRNARSIGLDLARHVESGLLRFEAARPSLYGLEMHLARMHRDIDRFEPTLVVIDPL 376

Query: 155 AALT-PRAEIEGDM 167
           +AL  P AE++  M
Sbjct: 377 SALRGPPAELQATM 390


>gi|119872827|ref|YP_930834.1| putative circadian clock protein, KaiC [Pyrobaculum islandicum DSM
           4184]
 gi|119674235|gb|ABL88491.1| putative circadian clock protein, KaiC [Pyrobaculum islandicum DSM
           4184]
          Length = 271

 Score = 40.4 bits (93), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 7/117 (5%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           ++  ++ +S+G   LD AL  GG P+G  V + G    GK+ L +H      K+G    +
Sbjct: 1   MYSHVKRISTGVETLDRALE-GGIPQGSWVVVTGEPGVGKSILCIHFAYAGLKSGDPVVY 59

Query: 101 VDAEHALDSIY--ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
           V  E     +   A++LG+D     +      ++  E+ +++V    VDI  +  VA
Sbjct: 60  VTTEQEFRDVMEQAKQLGMDFSQFSVYNIAWKKEPEELPEIVV----VDIFGLLKVA 112


>gi|328875049|gb|EGG23414.1| putative DNA repair protein [Dictyostelium fasciculatum]
          Length = 359

 Score = 40.4 bits (93), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 109/252 (43%), Gaps = 43/252 (17%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GGF  G I E++G   +GKT +  HT+  + +         G   +
Sbjct: 122 LTTGSKELDNLLD-GGFEAGSITELFGEFRTGKTQIC-HTLCVTCQLSINQGGGEGRALY 179

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------ 146
           +D E           A + G+D    L N+  ++    +  L+   +LV++ A+      
Sbjct: 180 IDTEGTFRPERLLEIAERFGLDGESVLNNVAYARAYNTDHQLQ---LLVQASAMMSESRY 236

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++++DS  AL  R +     G S    + R +++ LR L         +++  NQ+   
Sbjct: 237 SLLIVDSATALY-RTDYS---GRSELSDRQRHLARFLRGLQRLADEFGIVVIITNQVVAT 292

Query: 207 I--GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           +   V   +P    GG+ +   S+ RL +R+             + R+  V +  + P +
Sbjct: 293 VDGSVFNANPIKPIGGHIIAHASTTRLSLRK----------GKGENRICKVYDSPSLPEE 342

Query: 265 QVEFDIMYGEGI 276
           + +F I YG GI
Sbjct: 343 EKQFAI-YGYGI 353


>gi|54696278|gb|AAV38511.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [Homo
           sapiens]
          Length = 339

 Score = 40.4 bits (93), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 92/221 (41%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G I E++G   +GKT +  HT+A + +         G   +
Sbjct: 102 ITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQIC-HTLAVTCQLPIDRGEGEGKAMY 159

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E                      LD++ YAR    D +  L+ Q            M
Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASA---------M 210

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           +V S    ++++DS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 211 MVESRYA-LLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 263

Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++    MF + P+   GGN +   S+ RL +R+
Sbjct: 264 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 304


>gi|254973678|ref|ZP_05270150.1| DNA repair protein RadA [Clostridium difficile QCD-66c26]
 gi|255091070|ref|ZP_05320548.1| DNA repair protein RadA [Clostridium difficile CIP 107932]
 gi|255312723|ref|ZP_05354306.1| DNA repair protein RadA [Clostridium difficile QCD-76w55]
 gi|255648576|ref|ZP_05395478.1| DNA repair protein RadA [Clostridium difficile QCD-37x79]
 gi|260681796|ref|YP_003213081.1| DNA repair protein RadA [Clostridium difficile CD196]
 gi|260685393|ref|YP_003216526.1| DNA repair protein RadA [Clostridium difficile R20291]
 gi|260207959|emb|CBA60090.1| DNA repair protein [Clostridium difficile CD196]
 gi|260211409|emb|CBE01490.1| DNA repair protein [Clostridium difficile R20291]
          Length = 457

 Score = 40.4 bits (93), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 7/105 (6%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YA 112
           LD  LG GG  KG +V + G    GK+TL +   +     G T  ++  E +   I   A
Sbjct: 77  LDRVLG-GGIVKGSLVLVGGDPGIGKSTLLIQVSSNVANLGKTVLYITGEESESQIKMRA 135

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           ++LG++ +NL I      E  L I +  + S   ++I++DS+  +
Sbjct: 136 KRLGINSENLYI----FAENNLSIIESYLESVNPELIILDSIQTV 176


>gi|62858453|ref|NP_001016393.1| RAD51 homolog (RecA homolog) [Xenopus (Silurana) tropicalis]
 gi|134254224|gb|AAI35426.1| hypothetical protein LOC549147 [Xenopus (Silurana) tropicalis]
          Length = 336

 Score = 40.4 bits (93), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 91/221 (41%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +S+GS  LD  L  GG   G I E++G   +GKT L  HT+A + +         G   +
Sbjct: 99  ISTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQLC-HTLAVTCQLPIDRGGGEGKAMY 156

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E                      LD++ YAR    D +  L+ Q            M
Sbjct: 157 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASA---------M 207

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           +  S    ++++DS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 208 MAES-RYALLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 260

Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++    MF + P+   GGN +   S+ RL +R+
Sbjct: 261 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 301


>gi|222480669|ref|YP_002566906.1| KaiA binding [Halorubrum lacusprofundi ATCC 49239]
 gi|222453571|gb|ACM57836.1| KaiA binding [Halorubrum lacusprofundi ATCC 49239]
          Length = 231

 Score = 40.4 bits (93), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSG  G D AL  GGFP+ R+  + GP  SGKTT      AQ  + G    +V      +
Sbjct: 4   SSGVPGFD-ALVDGGFPENRLYVVSGPPGSGKTTFCSQFAAQGARNGEDVLYVSMHETKE 62

Query: 109 SIYARKLGVDL 119
            I     G D 
Sbjct: 63  GIRRDMGGYDF 73


>gi|82539154|ref|XP_723988.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23478474|gb|EAA15553.1| Rad51 homolog [Plasmodium yoelii yoelii]
          Length = 352

 Score = 40.4 bits (93), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 98/211 (46%), Gaps = 33/211 (15%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-----QKTG--GTCAFV 101
           ++GS  LD AL  GG   G I E++G   +GK+ L  HT+A +     +++G  G C ++
Sbjct: 115 TTGSKQLD-ALLKGGIETGGITELFGEFRTGKSQLC-HTLAITCQLPIEQSGGEGKCLWI 172

Query: 102 DAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------D 147
           D E           A++ G+     L N+  ++    +     T++L+ + A+       
Sbjct: 173 DTEGTFRPERIVAIAKRYGLHPTDCLNNIAYAKAYNCDHQ---TELLIDASAMMADTRFA 229

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++++DS  AL  R+E  G  GE L   Q+ L  + LR L          ++  NQ+  K+
Sbjct: 230 LLIVDSATALY-RSEYTG-RGE-LANRQSHL-CRFLRGLQRIADIYGVAVIITNQVVAKV 285

Query: 208 GV--MFGSPET-TTGGNALKFYSSVRLDIRR 235
               MFG  E    GGN +   S  RL +R+
Sbjct: 286 DAMSMFGGHEKIPIGGNIIAHASQTRLYLRK 316


>gi|325968380|ref|YP_004244572.1| DNA repair and recombination protein RadA [Vulcanisaeta moutnovskia
           768-28]
 gi|323707583|gb|ADY01070.1| DNA repair and recombination protein RadA [Vulcanisaeta moutnovskia
           768-28]
          Length = 358

 Score = 40.4 bits (93), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 110/244 (45%), Gaps = 32/244 (13%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA--LHTIAQ-SQKTGGTCA- 99
           GI  +S+G   LD  LG GG     I E+ G   SGKT L   L  I Q  +  GG  A 
Sbjct: 123 GIRRISTGVKALDELLG-GGIETKAITELVGEFGSGKTQLCHQLSIIVQLPEDRGGLKAK 181

Query: 100 --FVDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAV 146
             +VD E+          A+  G+D    L+N+L ++    +  + I +    ++    +
Sbjct: 182 ALYVDTENTFRPERIMQIAKYRGLDPQEALRNILYARAYNSDHQMMIIEESKKIIEKENI 241

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            +IVIDS+ A   R+E  G   E+L   Q +L +  + +L          +V  NQ+  +
Sbjct: 242 GLIVIDSLVAHF-RSEYPGR--ENLAERQQKL-NHHIAQLLRIADIYNVAVVVTNQVVAQ 297

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
             V FG+P    GGN +   ++ R+ +R     K K+++     R+  + +    P ++V
Sbjct: 298 PDVFFGNPLKPAGGNVIAHGATYRVWLR-----KGKENV-----RIAKIFDSPYHPEREV 347

Query: 267 EFDI 270
            F I
Sbjct: 348 TFRI 351


>gi|242767957|ref|XP_002341472.1| DNA repair protein RAD51, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218724668|gb|EED24085.1| DNA repair protein RAD51, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 349

 Score = 40.4 bits (93), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 94/211 (44%), Gaps = 29/211 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G I EI+G   +GK+ L  HT+A + +         G C +
Sbjct: 104 ITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQLC-HTLAVTCQLPFDMGGGEGKCLY 161

Query: 101 VDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDII 149
           +D E     +     A++ G+     L N+  ++    +  L++ +    ++      ++
Sbjct: 162 IDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 221

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           ++DS  AL  R +  G  GE L   Q  L ++ LR L          +V  NQ+  ++  
Sbjct: 222 IVDSATALY-RTDFNG-RGE-LSNRQTHL-AKFLRTLQRLADEFGIAVVITNQVVSQVDG 277

Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
               MF   P+   GGN +   S+ RL +++
Sbjct: 278 GPSSMFNPDPKKPIGGNIIAHASTTRLSLKK 308


>gi|147900484|ref|NP_001081236.1| DNA repair protein RAD51 homolog A [Xenopus laevis]
 gi|2500105|sp|Q91918|RA51A_XENLA RecName: Full=DNA repair protein RAD51 homolog A; Short=xRAD51.1
 gi|1054624|dbj|BAA07501.1| XRad51.1 [Xenopus laevis]
 gi|57033002|gb|AAH88930.1| LOC397726 protein [Xenopus laevis]
          Length = 336

 Score = 40.4 bits (93), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 91/221 (41%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +S+GS  LD  L  GG   G I E++G   +GKT L  HT+A + +         G   +
Sbjct: 99  ISTGSKELDKLLQ-GGVETGSITEMFGEFRTGKTQLC-HTLAVTCQLPIDRGGGEGKAMY 156

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E                      LD++ YAR    D +  L+ Q            M
Sbjct: 157 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASA---------M 207

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           +  S    ++++DS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 208 MAES-RYALLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 260

Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++    MF + P+   GGN +   S+ RL +R+
Sbjct: 261 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 301


>gi|21805949|gb|AAM76793.1| Dmc1 protein type A [Oryza sativa Indica Group]
          Length = 344

 Score = 40.4 bits (93), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 26/208 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  LD  LG GG     I E +G   SGKT LA HT+  S +         G  A+
Sbjct: 108 ITTGSQALDKLLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSAQLPIHMHGGNGKVAY 165

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149
           +D E           A + G+D    L N++ ++  T E    +   L    A +   ++
Sbjct: 166 IDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLL 225

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           ++DSV AL  R +  G  GE L   Q +L +Q L +LT         +   NQ+      
Sbjct: 226 IVDSVIALF-RVDFSGR-GE-LAKRQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
           G+     +   GG+ L   +++RL +R+
Sbjct: 282 GMFITDLKKPAGGHVLAHAATIRLMLRK 309


>gi|296136341|ref|YP_003643583.1| hypothetical protein Tint_1888 [Thiomonas intermedia K12]
 gi|295796463|gb|ADG31253.1| conserved hypothetical protein [Thiomonas intermedia K12]
          Length = 255

 Score = 40.4 bits (93), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 65/153 (42%), Gaps = 25/153 (16%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESS-GKTTLALHTIAQSQKTGGTCAFVDAEH 105
           VVSSG   LD  L  GG+P G + E+  P+ S  +  L    + Q    GG    V    
Sbjct: 36  VVSSGWAALDAELPGGGWPCGSLTEVLSPQPSLLEWRLLGQALRQVTADGGNVVLVGPPK 95

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
                  + LG+  + L+  Q +T  Q L +T+ LV                  +A+  G
Sbjct: 96  PPFLPGLQALGLQARQLIWVQTETPAQRLWVTEQLV------------------QADTAG 137

Query: 166 DMGESLPGMQARLMSQALRKLTSSIS--RSKCI 196
            +   LP  QAR  ++ LR+L S +   R+ CI
Sbjct: 138 AVLAWLP--QAR--AEPLRRLQSRLQGGRTLCI 166


>gi|308273426|emb|CBX30028.1| DNA repair protein radA homolog [uncultured Desulfobacterium sp.]
          Length = 455

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 7/118 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           FEG E + +G    D  LG GG   G ++ I G    GK+TL L T+    + G    +V
Sbjct: 66  FEGEERIQTGIGEFDRVLG-GGIVPGTMILIGGDPGIGKSTLMLQTLCSLAEKGLKVLYV 124

Query: 102 DAEHALD--SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
             E ++   S+ +R+L      LL+      E  +E+   +V S   D++VIDS+  +
Sbjct: 125 SGEESVRQISLRSRRLYAKSPGLLV----VSEIDVEVILSMVGSVKPDVLVIDSIQTM 178


>gi|126697593|ref|YP_001086490.1| DNA repair protein RadA [Clostridium difficile 630]
 gi|255099185|ref|ZP_05328162.1| DNA repair protein RadA [Clostridium difficile QCD-63q42]
 gi|255304968|ref|ZP_05349140.1| DNA repair protein RadA [Clostridium difficile ATCC 43255]
 gi|115249030|emb|CAJ66841.1| DNA repair protein [Clostridium difficile]
          Length = 457

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 7/105 (6%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YA 112
           LD  LG GG  KG +V + G    GK+TL +   +     G T  ++  E +   I   A
Sbjct: 77  LDRVLG-GGIVKGSLVLVGGDPGIGKSTLLIQVSSNVANLGKTVLYITGEESESQIKMRA 135

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           ++LG++ +NL I      E  L I +  + S   ++I++DS+  +
Sbjct: 136 KRLGINSENLYI----FAENNLSIIESYLESVNPELIILDSIQTV 176


>gi|18461373|gb|AAL71907.1|AF265548_1 meiotic protein Dmc1A [Oryza sativa Indica Group]
          Length = 344

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 26/208 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  LD  LG GG     I E +G   SGKT LA HT+  S +         G  A+
Sbjct: 108 ITTGSQALDKLLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSTQLPIHMHGGNGKVAY 165

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149
           +D E           A + G+D    L N++ ++  T E    +   L    A +   ++
Sbjct: 166 IDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLL 225

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           ++DSV AL  R +  G  GE L   Q +L +Q L +LT         +   NQ+      
Sbjct: 226 IVDSVIALF-RVDFSGR-GE-LAERQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
           G+     +   GG+ L   +++RL +R+
Sbjct: 282 GMFITDLKKPAGGHVLAHAATIRLMLRK 309


>gi|21242420|ref|NP_642002.1| hypothetical protein XAC1671 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21107862|gb|AAM36538.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 505

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +++GS GLD  +  GG P  R+  + G   +GKTTLAL  +      G +C +V     +
Sbjct: 12  ITTGSTGLDTIVR-GGLPANRLYLLEGQPGAGKTTLALQFLLDGAAKGDSCLYVTLSETI 70

Query: 108 DSI 110
           D +
Sbjct: 71  DEL 73


>gi|15678467|ref|NP_275582.1| recombinase [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2621505|gb|AAB84945.1| recombinase [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 238

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 98/227 (43%), Gaps = 44/227 (19%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG+P+GR + + G   SGKT + L    QS ++G    ++  E             D  
Sbjct: 19  IGGYPQGRSILVTGDPGSGKTIMGLQFAIQSARSGLKTIYITTEE------------DET 66

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +L I     G    +ITD+L  SG + II + ++ A    AEI   + ES+ G   ++++
Sbjct: 67  DLRIQCASLG---WDITDLL-ESGKLSIIGLSAMRARLTEAEISIGI-ESVKGNLRKILA 121

Query: 181 Q---------------ALRKLTSSISRSKC-ILVFINQMRMKIGVMFGSPETTTGGNALK 224
           +                  KLT+   R +  +L++  + R    ++     T+   N + 
Sbjct: 122 EIPDDTEVLIIDSIGSHTEKLTTDEFRDQFDLLIYELKKRDITAMIILDSATSEEFNDIA 181

Query: 225 FYS---SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
            YS   ++RL       IK ++  TG + RV  +  KM S    +EF
Sbjct: 182 LYSVYGAIRL-------IKRENPYTGRRERVMDII-KMRSTRTPIEF 220


>gi|57640983|ref|YP_183461.1| ATPase [Thermococcus kodakarensis KOD1]
 gi|57159307|dbj|BAD85237.1| ATPase, RecA superfamily [Thermococcus kodakarensis KOD1]
          Length = 232

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 8/99 (8%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G  GLDI L  GG   GR   + G   +GKTTLA+H        G +  ++  E   
Sbjct: 6   ISTGIPGLDIMLN-GGLIPGRTYLVKGAPGTGKTTLAMHFAMAGISNGESVLYITLEEPG 64

Query: 108 DSI---YARKLGVDLKN---LLISQPDTGEQALEITDML 140
           ++I   ++R +G D+ N    LI    T E  + + D  
Sbjct: 65  ENIKQDFSR-MGFDVYNENFTLIDATPTTEHYVLVEDFF 102


>gi|195341431|ref|XP_002037313.1| GM12184 [Drosophila sechellia]
 gi|194131429|gb|EDW53472.1| GM12184 [Drosophila sechellia]
          Length = 336

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 92/211 (43%), Gaps = 32/211 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GTCAF 100
           +S+GS  LD  LG GG   G I EI+G    GKT L  HT+A       SQK G G C +
Sbjct: 99  LSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLC-HTLAVTCQLPISQKGGEGKCMY 156

Query: 101 VDAEH--------ALDSIYARKLGVDLKNLLISQPDTGEQALEITDM---LVRSGAVDII 149
           +D E+        A+   Y       L N+  ++    +Q  ++  M   ++      ++
Sbjct: 157 IDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGMLFESRYALL 216

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           ++DS  AL  R++  G  GE L   Q  L    LR L          +V  NQ+   +  
Sbjct: 217 IVDSAMALY-RSDYIGR-GE-LAARQNHL-GLFLRMLQRLADEFGVAVVITNQVTASLD- 271

Query: 210 MFGSP-----ETTTGGNALKFYSSVRLDIRR 235
             G+P     +   GG+ +   S+ RL +R+
Sbjct: 272 --GAPGMFDAKKPIGGHIMAHSSTTRLYLRK 300


>gi|54696276|gb|AAV38510.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [synthetic
           construct]
          Length = 340

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 92/221 (41%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G I E++G   +GKT +  HT+A + +         G   +
Sbjct: 102 ITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQIC-HTLAVTCQLPIDQGGGEGKAMY 159

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E                      LD++ YAR    D +  L+ Q            M
Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASA---------M 210

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           +V S    ++++DS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 211 MVESRYA-LLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 263

Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++    MF + P+   GGN +   S+ RL +R+
Sbjct: 264 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 304


>gi|294339292|emb|CAZ87648.1| putative RecA/RadA recombinase [Thiomonas sp. 3As]
          Length = 255

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 65/153 (42%), Gaps = 25/153 (16%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESS-GKTTLALHTIAQSQKTGGTCAFVDAEH 105
           VVSSG   LD  L  GG+P G + E+  P+ S  +  L    + Q    GG    V    
Sbjct: 36  VVSSGWAALDAELPGGGWPCGSLTEVLSPQPSLLEWRLLGQALRQVTADGGNVVLVGPPK 95

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
                  + LG+  + L+  Q +T  Q L +T+ LV                  +A+  G
Sbjct: 96  PPFLPGLQALGLQARQLIWVQTETPAQRLWVTEQLV------------------QADTAG 137

Query: 166 DMGESLPGMQARLMSQALRKLTSSIS--RSKCI 196
            +   LP  QAR  ++ LR+L S +   R+ CI
Sbjct: 138 AVLAWLP--QAR--AEPLRRLQSRLQGGRTLCI 166


>gi|58262116|ref|XP_568468.1| meiotic recombination-related protein [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|57230641|gb|AAW46951.1| meiotic recombination-related protein, putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 323

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 92/211 (43%), Gaps = 29/211 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  +D  LG GG     I E++G   +GKT L  HT+  S +         G  A+
Sbjct: 85  ITTGSKSVDAMLG-GGIATQSITEVFGEYRTGKTQLC-HTLCVSTQLPEDQGGGSGKVAY 142

Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALE-ITDMLVR---SGAVDI 148
           +D E        R    + GVD    L N+L ++  + E   + + D+ +R     A  +
Sbjct: 143 IDTEGTFRPDRVRAVADRFGVDSNMALDNVLCARAWSSEHQCDLLVDLAIRFVEERAYKL 202

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +++DS+  L  R +  G  GE L   Q +L +Q L +L          +V  NQ++   G
Sbjct: 203 LIVDSIMNLF-RQDYSG-RGE-LSERQQKL-NQFLARLQKLAEEFNIAIVLTNQVQADPG 258

Query: 209 VMFGSPET----TTGGNALKFYSSVRLDIRR 235
                         GG+ L   S+ R+ +R+
Sbjct: 259 AAAMFAAASSAKPVGGHILAHASATRIALRK 289


>gi|312111950|ref|YP_003990266.1| DnaB domain protein helicase [Geobacillus sp. Y4.1MC1]
 gi|311217051|gb|ADP75655.1| DnaB domain protein helicase domain protein [Geobacillus sp.
           Y4.1MC1]
          Length = 441

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 14/111 (12%)

Query: 19  ALSQIQRVYGK-GAIMQLGS------QGSIFEGIEVVSS--GSLGLDIAL-----GIGGF 64
            + +I  VY + GA+ +L S      Q  +F+  E + S  G +G+D  L      IGGF
Sbjct: 127 TVEKINEVYQQLGALQELSSSSIRTIQDGLFDIYEDLLSPQGDIGVDTGLIDLNRLIGGF 186

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
            K  ++ I G  S+GKT  AL+      K GG       E + D +  R L
Sbjct: 187 QKNDLIIIAGRPSTGKTAFALNIAMNHLKNGGVVDLFSLEMSEDQLLKRML 237


>gi|195574987|ref|XP_002105464.1| GD17366 [Drosophila simulans]
 gi|194201391|gb|EDX14967.1| GD17366 [Drosophila simulans]
          Length = 336

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 92/211 (43%), Gaps = 32/211 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GTCAF 100
           +S+GS  LD  LG GG   G I EI+G    GKT L  HT+A       SQK G G C +
Sbjct: 99  LSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLC-HTLAVTCQLPISQKGGEGKCMY 156

Query: 101 VDAEH--------ALDSIYARKLGVDLKNLLISQPDTGEQALEITDM---LVRSGAVDII 149
           +D E+        A+   Y       L N+  ++    +Q  ++  M   ++      ++
Sbjct: 157 IDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGMLFESRYALL 216

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           ++DS  AL  R++  G  GE L   Q  L    LR L          +V  NQ+   +  
Sbjct: 217 IVDSAMALY-RSDYIGR-GE-LAARQNHL-GLFLRMLQRLADEFGVAVVITNQVTASLD- 271

Query: 210 MFGSP-----ETTTGGNALKFYSSVRLDIRR 235
             G+P     +   GG+ +   S+ RL +R+
Sbjct: 272 --GAPGMFDAKKPIGGHIMAHSSTTRLYLRK 300


>gi|194905727|ref|XP_001981245.1| GG11967 [Drosophila erecta]
 gi|190655883|gb|EDV53115.1| GG11967 [Drosophila erecta]
          Length = 335

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 92/211 (43%), Gaps = 32/211 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GTCAF 100
           +S+GS  LD  LG GG   G I EI+G    GKT L  HT+A       SQK G G C +
Sbjct: 98  LSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLC-HTLAVTCQLPISQKGGEGKCMY 155

Query: 101 VDAEH--------ALDSIYARKLGVDLKNLLISQPDTGEQALEITDM---LVRSGAVDII 149
           +D E+        A+   Y       L N+  ++    +Q  ++  M   ++      ++
Sbjct: 156 IDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGMLFESRYALL 215

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           ++DS  AL  R++  G  GE L   Q  L    LR L          +V  NQ+   +  
Sbjct: 216 IVDSAMALY-RSDYIGR-GE-LAARQNHL-GLFLRMLQRLADEFGVAVVITNQVTASLD- 270

Query: 210 MFGSP-----ETTTGGNALKFYSSVRLDIRR 235
             G+P     +   GG+ +   S+ RL +R+
Sbjct: 271 --GAPGMFDAKKPIGGHIMAHSSTTRLYLRK 299


>gi|19924133|ref|NP_002866.2| DNA repair protein RAD51 homolog 1 isoform 1 [Homo sapiens]
 gi|55641879|ref|XP_510313.1| PREDICTED: RAD51 homolog protein isoform 5 [Pan troglodytes]
 gi|114656377|ref|XP_001144621.1| PREDICTED: RAD51 homolog protein isoform 3 [Pan troglodytes]
 gi|114656380|ref|XP_001144693.1| PREDICTED: RAD51 homolog protein isoform 4 [Pan troglodytes]
 gi|297696332|ref|XP_002825350.1| PREDICTED: DNA repair protein RAD51 homolog 1-like isoform 1 [Pongo
           abelii]
 gi|548663|sp|Q06609|RAD51_HUMAN RecName: Full=DNA repair protein RAD51 homolog 1; Short=HsRAD51;
           Short=hRAD51; AltName: Full=RAD51 homolog A
 gi|285977|dbj|BAA03189.1| RAD51 [Homo sapiens]
 gi|5733658|gb|AAD49705.1| Rad51 [Homo sapiens]
 gi|7767554|gb|AAF69145.1| RAD51 [Homo sapiens]
 gi|27368250|gb|AAN87149.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [Homo
           sapiens]
 gi|49168602|emb|CAG38796.1| RAD51 [Homo sapiens]
 gi|60817856|gb|AAX36441.1| RAD51-like [synthetic construct]
 gi|61358913|gb|AAX41640.1| RAD51-like [synthetic construct]
 gi|119612840|gb|EAW92434.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae), isoform
           CRA_d [Homo sapiens]
 gi|189069251|dbj|BAG36283.1| unnamed protein product [Homo sapiens]
 gi|261860564|dbj|BAI46804.1| RAD51 homolog [synthetic construct]
          Length = 339

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 92/221 (41%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G I E++G   +GKT +  HT+A + +         G   +
Sbjct: 102 ITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQIC-HTLAVTCQLPIDRGGGEGKAMY 159

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E                      LD++ YAR    D +  L+ Q            M
Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASA---------M 210

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           +V S    ++++DS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 211 MVESRYA-LLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 263

Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++    MF + P+   GGN +   S+ RL +R+
Sbjct: 264 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 304


>gi|17864108|ref|NP_524583.1| spindle A, isoform A [Drosophila melanogaster]
 gi|2500104|sp|Q27297|RAD51_DROME RecName: Full=DNA repair protein Rad51 homolog; AltName:
           Full=Protein spindle-A; AltName: Full=RecA protein
           homolog
 gi|693878|dbj|BAA04580.1| Rad51 [Drosophila melanogaster]
 gi|762789|gb|AAA64873.1| RAD51-like protein [Drosophila melanogaster]
 gi|807700|dbj|BAA07039.1| RecA protein homologue [Drosophila melanogaster]
 gi|7301897|gb|AAF57005.1| spindle A, isoform A [Drosophila melanogaster]
 gi|255522982|gb|ACU12383.1| RE29170p [Drosophila melanogaster]
          Length = 336

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 92/211 (43%), Gaps = 32/211 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GTCAF 100
           +S+GS  LD  LG GG   G I EI+G    GKT L  HT+A       SQK G G C +
Sbjct: 99  LSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLC-HTLAVTCQLPISQKGGEGKCMY 156

Query: 101 VDAEH--------ALDSIYARKLGVDLKNLLISQPDTGEQALEITDM---LVRSGAVDII 149
           +D E+        A+   Y       L N+  ++    +Q  ++  M   ++      ++
Sbjct: 157 IDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGMLFESRYALL 216

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           ++DS  AL  R++  G  GE L   Q  L    LR L          +V  NQ+   +  
Sbjct: 217 IVDSAMALY-RSDYIGR-GE-LAARQNHL-GLFLRMLQRLADEFGVAVVITNQVTASLD- 271

Query: 210 MFGSP-----ETTTGGNALKFYSSVRLDIRR 235
             G+P     +   GG+ +   S+ RL +R+
Sbjct: 272 --GAPGMFDAKKPIGGHIMAHSSTTRLYLRK 300


>gi|126277684|ref|XP_001370830.1| PREDICTED: similar to RAD51 homolog (RecA homolog, E. coli) (S.
           cerevisiae), isoform 1 [Monodelphis domestica]
          Length = 339

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 92/221 (41%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G I EI+G   +GKT +  HT+A + +         G   +
Sbjct: 102 ITTGSKELDKLLQ-GGIETGSITEIFGEFRTGKTQIC-HTLAVTCQLPIDRGGGEGKAMY 159

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E                      LD++ YAR    D +  L+ Q            M
Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASA---------M 210

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           +V S    ++++DS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 211 MVES-RYALLIVDSSTALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 263

Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++    MF + P+   GGN +   S+ RL +R+
Sbjct: 264 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 304


>gi|397827|dbj|BAA02962.1| HsRad51 [Homo sapiens]
          Length = 339

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 92/221 (41%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G I E++G   +GKT +  HT+A + +         G   +
Sbjct: 102 ITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQIC-HTLAVTCQLPIDRGGGEGKAMY 159

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E                      LD++ YAR    D +  L+ Q            M
Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASA---------M 210

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           +V S    ++++DS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 211 MVESRYA-LLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 263

Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++    MF + P+   GGN +   S+ RL +R+
Sbjct: 264 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 304


>gi|134118469|ref|XP_772121.1| hypothetical protein CNBM1660 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50254728|gb|EAL17474.1| hypothetical protein CNBM1660 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 330

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 92/211 (43%), Gaps = 29/211 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  +D  LG GG     I E++G   +GKT L  HT+  S +         G  A+
Sbjct: 92  ITTGSKSVDAMLG-GGIATQSITEVFGEYRTGKTQLC-HTLCVSTQLPEDQGGGSGKVAY 149

Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALE-ITDMLVR---SGAVDI 148
           +D E        R    + GVD    L N+L ++  + E   + + D+ +R     A  +
Sbjct: 150 IDTEGTFRPDRVRAVADRFGVDSNMALDNVLCARAWSSEHQCDLLVDLAIRFVEERAYKL 209

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +++DS+  L  R +  G  GE L   Q +L +Q L +L          +V  NQ++   G
Sbjct: 210 LIVDSIMNLF-RQDYSG-RGE-LSERQQKL-NQFLARLQKLAEEFNIAIVLTNQVQADPG 265

Query: 209 VMFGSPET----TTGGNALKFYSSVRLDIRR 235
                         GG+ L   S+ R+ +R+
Sbjct: 266 AAAMFAAASSAKPVGGHILAHASATRIALRK 296


>gi|197123430|ref|YP_002135381.1| non-specific serine/threonine protein kinase [Anaeromyxobacter sp.
           K]
 gi|196173279|gb|ACG74252.1| Non-specific serine/threonine protein kinase [Anaeromyxobacter sp.
           K]
          Length = 497

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           ++G  GLD  LG GGFP+ R+  + G   +GKTTL+L  + +  + G +C ++
Sbjct: 13  ATGIPGLDDVLG-GGFPRRRVHLLQGTPGAGKTTLSLQFLMEGVREGESCLYI 64


>gi|115487302|ref|NP_001066138.1| Os12g0143800 [Oryza sativa Japonica Group]
 gi|14669854|dbj|BAB62026.1| RiLIM15A [Oryza sativa]
 gi|18700483|dbj|BAB85213.1| DMC1 [Oryza sativa Japonica Group]
 gi|113648645|dbj|BAF29157.1| Os12g0143800 [Oryza sativa Japonica Group]
 gi|215766778|dbj|BAG99006.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 344

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 26/208 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  LD  LG GG     I E +G   SGKT LA HT+  S +         G  A+
Sbjct: 108 ITTGSQALDKLLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSAQLPIHMHGGNGKVAY 165

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149
           +D E           A + G+D    L N++ ++  T E    +   L    A +   ++
Sbjct: 166 IDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLL 225

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           ++DSV AL  R +  G  GE L   Q +L +Q L +LT         +   NQ+      
Sbjct: 226 IVDSVIALF-RVDFSGR-GE-LAERQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
           G+     +   GG+ L   +++RL +R+
Sbjct: 282 GMFITDLKKPAGGHVLAHAATIRLMLRK 309


>gi|13541288|ref|NP_110976.1| DNA repair and recombination protein RadA [Thermoplasma volcanium
           GSS1]
 gi|20139594|sp|Q97BJ9|RADA_THEVO RecName: Full=DNA repair and recombination protein radA
 gi|14324671|dbj|BAB59598.1| cell cycle progression protein DMC1 [Thermoplasma volcanium GSS1]
          Length = 323

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 93/208 (44%), Gaps = 22/208 (10%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----LALHTIAQSQKTG--GTC 98
           I+ +++GS  LD  LG GG     I E +G   SGKT     LA++     +K G     
Sbjct: 87  IQKLTTGSKNLDDLLG-GGLETQAITEFFGEFGSGKTQIMHQLAVNCTMPKEKGGFDSDV 145

Query: 99  AFVDAEHALDS----IYARKLGVD----LKNLLISQP-DTGEQAL--EITDMLVRSGAVD 147
             +D E+          A+  G+D    LK + +++  ++  Q L  E      +   + 
Sbjct: 146 MMIDTENTFRPERIIQMAKSKGLDPDETLKRIHVARAYNSHHQILLAEKAQETAKEFNIR 205

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++++DS+ A   R+E    +G      + +L+++ +  L    +    ++   NQ+  + 
Sbjct: 206 LLIVDSLTAHF-RSEY---VGRGSLAERQQLLNKHMHDLLRFGTIYNAVIAVTNQVSARP 261

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
            V FG P    GGN +   ++ R+ +R+
Sbjct: 262 DVFFGDPMAPIGGNIVGHTATFRVYLRK 289


>gi|225175211|ref|ZP_03729207.1| DNA repair protein RadA [Dethiobacter alkaliphilus AHT 1]
 gi|225169387|gb|EEG78185.1| DNA repair protein RadA [Dethiobacter alkaliphilus AHT 1]
          Length = 418

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 8/109 (7%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH-- 105
           +S+GS+ LD  LG GG   G +V I G    GK+TL L         G    +V  E   
Sbjct: 36  ISTGSIELDRVLG-GGMVPGSLVLIGGDPGIGKSTLVLQAARGLGTAGKKVLYVAGEESP 94

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           A   + AR+LGV+   L++++ D    A+E   + +R    D++++DS+
Sbjct: 95  AQLQMRARRLGVNSDILILAETDM--TAIEEQVLAIRP---DVVIVDSI 138


>gi|114704684|ref|ZP_01437592.1| DNA repair protein [Fulvimarina pelagi HTCC2506]
 gi|114539469|gb|EAU42589.1| DNA repair protein [Fulvimarina pelagi HTCC2506]
          Length = 472

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 23/159 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           ++SG   LD A G GG  +G  + I G    GK+TL +   +   + G +  +V  E A+
Sbjct: 71  IASGIAELDRATG-GGIVRGSAILIGGDPGIGKSTLLMQASSALARKGASVVYVSGEEAV 129

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDM------LVRSGAVDIIVIDSVAALTPRA 161
             +  R   +D         DT  Q +  T++      L  +G  D+++IDS+  L    
Sbjct: 130 AQVRLRAERLDAA-------DTSVQLMAETNVEDILATLAANGRPDLVIIDSIQTLW--- 179

Query: 162 EIEGDMGESLPG--MQARLMSQALRKLTSSISRSKCILV 198
               D+ ES PG   Q R  +Q+L +   + S +  ILV
Sbjct: 180 ---SDLAESAPGTVTQVRTGAQSLIRFAKA-SGAAVILV 214


>gi|327353831|gb|EGE82688.1| meiotic recombination protein dmc1 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 358

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 23/140 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IA 89
           M+LG Q    + +  +S+GS   D  L  GGF    I E+YG    GKT L+ HT   +A
Sbjct: 86  MELGHQR---KRVVRISTGSKQFDSILA-GGFQSMSISEVYGEFRCGKTQLS-HTMSVVA 140

Query: 90  QSQK----TGGTCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEIT 137
           Q  K      G  A++D E        +  A + GVD    L+N+  ++    E  LE+ 
Sbjct: 141 QLPKDMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELL 200

Query: 138 DMLVRS---GAVDIIVIDSV 154
           + L +    G   +++IDS+
Sbjct: 201 NTLAKEFAGGEYRLLIIDSI 220


>gi|256071033|ref|XP_002571846.1| DNA repair protein RAD51 [Schistosoma mansoni]
 gi|238656994|emb|CAZ28076.1| DNA repair protein RAD51, putative [Schistosoma mansoni]
          Length = 338

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 95/214 (44%), Gaps = 37/214 (17%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G I E++G   +GKT +  HT+A + +         G C +
Sbjct: 101 LTTGSKELDKLLQ-GGIETGSITELFGEFRTGKTQIC-HTLAVTCQLPIDMGGGEGKCLY 158

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------ 146
           +D E           A + G+     L N+  ++    +  +E   +L+ + A+      
Sbjct: 159 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAYNTDHQME---LLINAAAMMSESRY 215

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMR 204
            ++++DS  AL  R +  G  GE    + AR M  A  LR L          +V  NQ+ 
Sbjct: 216 ALLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRTLLRLADEFGVAVVITNQVV 269

Query: 205 MKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
            ++    MF + P+   GGN +   S+ RL +R+
Sbjct: 270 AQVDGAAMFSADPKKPIGGNIMGHASTTRLYLRK 303


>gi|306821580|ref|ZP_07455178.1| DNA repair protein RadA [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550325|gb|EFM38318.1| DNA repair protein RadA [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 503

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 22/156 (14%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL---HTIAQSQKTGGTCAFVDAEH 105
           S+G    D  LG GG   G +V I G    GK+T+ L   + I +S+K      +V AE 
Sbjct: 114 STGIAEFDRVLG-GGIVNGSLVLIGGDPGIGKSTILLQLTNNICKSKKV----LYVSAEE 168

Query: 106 ALDSIYARK---LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           +L+ I  R       D   L+++Q +     LE+ +  +   + D+++IDS+  ++  + 
Sbjct: 169 SLEQIKLRADRIFSKDSDILIMAQTN-----LEVIESKLSDQSFDVVIIDSIQTVSTAS- 222

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
                 +SLPG   ++   A R +    SR+ C  +
Sbjct: 223 -----SDSLPGSVTQVKDIANRLMKICKSRNICCFI 253


>gi|60829742|gb|AAX36891.1| RAD51-like [synthetic construct]
 gi|61369103|gb|AAX43285.1| RAD51-like [synthetic construct]
          Length = 340

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 92/221 (41%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G I E++G   +GKT +  HT+A + +         G   +
Sbjct: 102 ITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQIC-HTLAVTCQLPIDRGGGEGKAMY 159

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E                      LD++ YAR    D +  L+ Q            M
Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASA---------M 210

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           +V S    ++++DS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 211 MVESRYA-LLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 263

Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++    MF + P+   GGN +   S+ RL +R+
Sbjct: 264 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 304


>gi|304367643|gb|ADM26629.1| DNA repair protein rad51 [Polypedilum vanderplanki]
          Length = 347

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 28/132 (21%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  LG GG   G I E++G   SGKT LA HT+A + +         G C +
Sbjct: 107 ITTGSRELDKLLG-GGIETGSITEVFGEFRSGKTQLA-HTLAVTCQLPANSGGGQGKCLY 164

Query: 101 VDAE-----HALDSIYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV----- 146
           +D E       L SI A +  +D    L N+ +++    +  L    +LV + A+     
Sbjct: 165 IDTEGTFRPERLSSI-AERFKMDPNEVLDNIAVARAYNTDHQL---TLLVHASAIMADTR 220

Query: 147 -DIIVIDSVAAL 157
             ++V+DS  AL
Sbjct: 221 FALLVVDSATAL 232


>gi|158422157|ref|YP_001523449.1| DNA repair protein RadA [Azorhizobium caulinodans ORS 571]
 gi|158329046|dbj|BAF86531.1| DNA repair protein [Azorhizobium caulinodans ORS 571]
          Length = 471

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 73/181 (40%), Gaps = 14/181 (7%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
            N + +   L A +   QR   KG  + L +     +    + SG   LD   G GGF  
Sbjct: 30  WNTISEETNLAATVPAAQRAGRKGRAVPLETLHGEAKPAPRLVSGIGELDRVAG-GGFVP 88

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLI 124
           G IV + G    GK+TL +   A   K G    +V  E A+D +  R  +LG+    + +
Sbjct: 89  GSIVLLGGDPGIGKSTLLVQASAALAKAGHRVIYVSGEEAVDQVRMRAGRLGLAQAPVAL 148

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQA 182
           +     E    I        AV  +VIDS+  L        D  ES PG   Q R  +Q 
Sbjct: 149 AAETNAEN---ILATFSAGAAVQFVVIDSIQTLW------SDSVESAPGTVTQVRTSAQL 199

Query: 183 L 183
           L
Sbjct: 200 L 200


>gi|83945270|ref|ZP_00957619.1| DNA repair protein RadA [Oceanicaulis alexandrii HTCC2633]
 gi|83851440|gb|EAP89296.1| DNA repair protein RadA [Oceanicaulis alexandrii HTCC2633]
          Length = 456

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 10/171 (5%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           ++L   GS  E  +   +G   LD   G GG   G  + + G    GK+TL L  +AQ  
Sbjct: 59  LELVDLGSATEDPKRFETGLRELDRVAG-GGLVPGSAILVGGDPGIGKSTLLLQAVAQLA 117

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K G    +V  E A D +  R   + L +  ++     E +LE+    ++    DI VID
Sbjct: 118 KAGAKSVYVSGEEAADQVRRRARRLGLADAPVAL--AAETSLEVILDGLKKETPDIAVID 175

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           SV  L        D   + PG  A++ + A ++L     +   I++ +  +
Sbjct: 176 SVQTLW------SDQLAAAPGTVAQVRACA-QELVRFAKKKNTIIILVGHV 219


>gi|316978565|gb|EFV61540.1| DNA repair and recombination protein RadA [Trichinella spiralis]
          Length = 364

 Score = 40.0 bits (92), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 91/222 (40%), Gaps = 52/222 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G I E++G   +GKT L  HT+A + +         G C +
Sbjct: 126 ITTGSKELDKLLQ-GGIETGSITEVFGEFRTGKTQLC-HTLAVTCQLPVDMGGGEGKCLY 183

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E                      LD++ YAR    D ++ L+ Q             
Sbjct: 184 IDTEGTFRPERLLSVADRFQLSGPDVLDNVAYARAYNTDHQSQLLIQ----------ASA 233

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS--QALRKLTSSISRSKCIL 197
           ++      ++++DS  AL  R +  G  GE    + AR M   + LR L          +
Sbjct: 234 MMSESRYALLIVDSATALY-RTDYSG-RGE----LSARQMHLGRFLRYLLRLADEFGVAV 287

Query: 198 VFINQMRMKI---GVMF-GSPETTTGGNALKFYSSVRLDIRR 235
           +  NQ+  ++     MF   P+   GGN +   S+ RL +R+
Sbjct: 288 LITNQVVAQVDGGTAMFQADPKKPIGGNIMAHASTTRLYLRK 329


>gi|209946266|gb|ACI97364.1| spindle A [Drosophila yakuba]
          Length = 211

 Score = 40.0 bits (92), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 9/67 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GTCAF 100
           +S+GS  LD  LG GG   G I EI+G    GKT L  HT+A       SQK G G C +
Sbjct: 99  LSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLC-HTLAVTCQLPISQKGGEGKCMY 156

Query: 101 VDAEHAL 107
           +D E+  
Sbjct: 157 IDTENTF 163


>gi|183579813|emb|CAK26102.1| mutS homologue [Leishmania major]
 gi|183579815|emb|CAK26103.1| mutS homologue [Leishmania major]
          Length = 1377

 Score = 40.0 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 15/137 (10%)

Query: 48   VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA- 106
            VS  S GL ++ G GG   G +  + GP + GKTTL L  + Q         FV A+HA 
Sbjct: 1135 VSDSSGGLTMSWGSGG---GHVCVVTGPNACGKTTL-LRILGQYFTLAQAGCFVPAQHAQ 1190

Query: 107  ---LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
                D + A  L  +L +  I+      + +E++++   + A  + +ID +   T  A+ 
Sbjct: 1191 LFLADRLLAHMLCDELPS--ITHSSFRRELMELSELTHAATAESVALIDELGRSTTTAQ- 1247

Query: 164  EGDMGESLPGMQARLMS 180
                G SL    A L+S
Sbjct: 1248 ----GFSLAWATALLLS 1260


>gi|183579811|emb|CAK26101.1| mutS homologue [Leishmania major]
          Length = 1377

 Score = 40.0 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 15/137 (10%)

Query: 48   VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA- 106
            VS  S GL ++ G GG   G +  + GP + GKTTL L  + Q         FV A+HA 
Sbjct: 1135 VSDSSGGLTMSWGSGG---GHVCVVTGPNACGKTTL-LRILGQYFTLAQAGCFVPAQHAQ 1190

Query: 107  ---LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
                D + A  L  +L +  I+      + +E++++   + A  + +ID +   T  A+ 
Sbjct: 1191 LFLADRLLAHMLCDELPS--ITHSSFRRELMELSELTHAATAESVALIDELGRSTTTAQ- 1247

Query: 164  EGDMGESLPGMQARLMS 180
                G SL    A L+S
Sbjct: 1248 ----GFSLAWATALLLS 1260


>gi|157868970|ref|XP_001683037.1| mis-match repair protein [Leishmania major strain Friedlin]
 gi|68223920|emb|CAJ04396.1| putative mis-match repair protein [Leishmania major strain Friedlin]
          Length = 1377

 Score = 40.0 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 15/137 (10%)

Query: 48   VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA- 106
            VS  S GL ++ G GG   G +  + GP + GKTTL L  + Q         FV A+HA 
Sbjct: 1135 VSDSSGGLTMSWGSGG---GHVCVVTGPNACGKTTL-LRILGQYFTLAQAGCFVPAQHAQ 1190

Query: 107  ---LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
                D + A  L  +L +  I+      + +E++++   + A  + +ID +   T  A+ 
Sbjct: 1191 LFLADRLLAHMLCDELPS--ITHSSFRRELMELSELTHAATAESVALIDELGRSTTTAQ- 1247

Query: 164  EGDMGESLPGMQARLMS 180
                G SL    A L+S
Sbjct: 1248 ----GFSLAWATALLLS 1260


>gi|24651285|ref|NP_733342.1| spindle A, isoform B [Drosophila melanogaster]
 gi|23172653|gb|AAN14213.1| spindle A, isoform B [Drosophila melanogaster]
          Length = 279

 Score = 40.0 bits (92), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 92/211 (43%), Gaps = 32/211 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GTCAF 100
           +S+GS  LD  LG GG   G I EI+G    GKT L  HT+A       SQK G G C +
Sbjct: 42  LSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLC-HTLAVTCQLPISQKGGEGKCMY 99

Query: 101 VDAEH--------ALDSIYARKLGVDLKNLLISQPDTGEQALEITDM---LVRSGAVDII 149
           +D E+        A+   Y       L N+  ++    +Q  ++  M   ++      ++
Sbjct: 100 IDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGMLFESRYALL 159

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           ++DS  AL  R++  G  GE L   Q  L    LR L          +V  NQ+   +  
Sbjct: 160 IVDSAMALY-RSDYIGR-GE-LAARQNHL-GLFLRMLQRLADEFGVAVVITNQVTASLD- 214

Query: 210 MFGSP-----ETTTGGNALKFYSSVRLDIRR 235
             G+P     +   GG+ +   S+ RL +R+
Sbjct: 215 --GAPGMFDAKKPIGGHIMAHSSTTRLYLRK 243


>gi|305663910|ref|YP_003860198.1| putative circadian clock protein, KaiC [Ignisphaera aggregans DSM
           17230]
 gi|304378479|gb|ADM28318.1| putative circadian clock protein, KaiC [Ignisphaera aggregans DSM
           17230]
          Length = 285

 Score = 40.0 bits (92), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 10/112 (8%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I  +S+G   LD AL  GG PKG  V I G   +GK+ L +H      K G    +V 
Sbjct: 16  EIIHRISTGVSELDRALE-GGIPKGSWVAITGEPGTGKSILCMHFAWAGIKAGDPVVYVT 74

Query: 103 AEHALDSIY--ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
            E     +   A+  G+D +   I    + +Q  E       +    I+VID
Sbjct: 75  TEAEFRDVLKQAKMFGMDFEQYRILDISSSKQYQE-------ANPPHIVVID 119


>gi|212223760|ref|YP_002306996.1| ATPase [Thermococcus onnurineus NA1]
 gi|212008717|gb|ACJ16099.1| ATPase [Thermococcus onnurineus NA1]
          Length = 234

 Score = 40.0 bits (92), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G  GLD  L  GG   GR   + G   +GKTTLA+H        G    +V  E   
Sbjct: 6   ISTGIPGLDAMLN-GGLIPGRTYLVKGAPGTGKTTLAMHFAMAGIANGENVLYVTLEEPA 64

Query: 108 DSIYA--RKLGVDLKN 121
           D++ A   K+G +L++
Sbjct: 65  DNLRADMTKMGFNLRD 80


>gi|71028444|ref|XP_763865.1| DNA repair protein Rad51 [Theileria parva strain Muguga]
 gi|68350819|gb|EAN31582.1| DNA repair protein rad51, putative [Theileria parva]
          Length = 343

 Score = 40.0 bits (92), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 103/214 (48%), Gaps = 39/214 (18%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-----QKTG--GTCAFV 101
           ++GS  LD  L  GG   G I EI G   +GK+ L  HT+A +     +++G  G C +V
Sbjct: 106 TTGSAQLDKLLQ-GGVETGSITEIIGEFKTGKSQLC-HTLAVTCQLPVEQSGGEGKCLWV 163

Query: 102 DAEHALD-----SIYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------ 146
           D+E         SI A++ G+     L N+  ++    +  LE   +LV + A+      
Sbjct: 164 DSEGTFRPERIVSI-AKRFGLSPSDCLDNVAYARAYNTDHQLE---LLVEASAMMAQTRF 219

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS--QALRKLTSSISRSKCILVFINQMR 204
            ++++DS  +L  R++  G  GE L   Q  L    +AL+++  +   +   +V  NQ+ 
Sbjct: 220 ALLIVDSATSLY-RSDYSG-RGE-LASRQMHLCKFLRALQRIADTFGVA---VVITNQVV 273

Query: 205 MKIGVM---FGSPETTTGGNALKFYSSVRLDIRR 235
            K+  M   FG+ +   GG+ +   S  RL +R+
Sbjct: 274 AKVDAMSTFFGNDKLPVGGHIIAHASQTRLFLRQ 307


>gi|240280982|gb|EER44485.1| meiotic recombination protein [Ajellomyces capsulatus H143]
          Length = 381

 Score = 40.0 bits (92), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 23/140 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IA 89
           M+LG Q    + +  +S+GS   D  L  GGF    I E+YG    GKT L+ HT   +A
Sbjct: 108 MELGHQR---KRVVKISTGSKQFDSILA-GGFQSMSISEVYGEFRCGKTQLS-HTMSVMA 162

Query: 90  QSQK----TGGTCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEIT 137
           Q  K      G  A++D E        +  A + GVD    L+N+  ++    E  LE+ 
Sbjct: 163 QLPKDMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELL 222

Query: 138 DMLVRS---GAVDIIVIDSV 154
           + L +    G   +++IDS+
Sbjct: 223 NTLSKEFVGGEYRLLIIDSI 242


>gi|209946268|gb|ACI97365.1| spindle A [Drosophila simulans]
          Length = 211

 Score = 40.0 bits (92), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 9/67 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GTCAF 100
           +S+GS  LD  LG GG   G I EI+G    GKT L  HT+A       SQK G G C +
Sbjct: 99  LSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLC-HTLAVTCQLPISQKGGEGKCMY 156

Query: 101 VDAEHAL 107
           +D E+  
Sbjct: 157 IDTENTF 163


>gi|170291049|ref|YP_001737865.1| Rad51 domain-containing protein [Candidatus Korarchaeum cryptofilum
           OPF8]
 gi|170175129|gb|ACB08182.1| Rad51 domain protein [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 298

 Score = 40.0 bits (92), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 21/106 (19%)

Query: 69  IVEIYGPESSGKTTLALHTIAQS---QKTGGTCA----FVDAEHALD----SIYARKLGV 117
           I  IYGP +SGKT   ++   +S   ++ GG  +    F+D E   D    S + R+ G+
Sbjct: 94  ITGIYGPPASGKTQFCIYMTVRSLLNEERGGISSERAVFIDTEGTFDPGRASAFLRQNGL 153

Query: 118 DLKNLLISQPDT--------GEQALEITDMLVRSGAVDIIVIDSVA 155
             ++L  S+ D          ++ALEI    VRSG   +I +DS++
Sbjct: 154 SERDL--SRIDVLRVNNIIQLKEALEIAMSYVRSGTSKLICLDSIS 197


>gi|225562590|gb|EEH10869.1| meiotic recombination protein dmc1 [Ajellomyces capsulatus G186AR]
          Length = 381

 Score = 40.0 bits (92), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 23/140 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IA 89
           M+LG Q    + +  +S+GS   D  L  GGF    I E+YG    GKT L+ HT   +A
Sbjct: 108 MELGHQR---KRVVKISTGSKQFDSILA-GGFQSMSISEVYGEFRCGKTQLS-HTMSVMA 162

Query: 90  QSQK----TGGTCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEIT 137
           Q  K      G  A++D E        +  A + GVD    L+N+  ++    E  LE+ 
Sbjct: 163 QLPKDMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELL 222

Query: 138 DMLVRS---GAVDIIVIDSV 154
           + L +    G   +++IDS+
Sbjct: 223 NTLSKEFVGGEYRLLIIDSI 242


>gi|21805940|gb|AAM76791.1| Dmc1 protein type A [Oryza sativa Japonica Group]
          Length = 344

 Score = 40.0 bits (92), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 26/208 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  LD  LG GG     I E +G   SGKT LA HT+  S +         G  A+
Sbjct: 108 ITTGSQALDELLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSAQLPIHMHGGNGKVAY 165

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149
           +D E           A + G+D    L N++ ++  T E    +   L    A +   ++
Sbjct: 166 IDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLL 225

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           ++DSV AL  R +  G  GE L   Q +L +Q L +LT         +   NQ+      
Sbjct: 226 IVDSVIALF-RVDFSGR-GE-LAERQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
           G+     +   GG+ L   +++RL +R+
Sbjct: 282 GMFITDLKKPAGGHVLAHAATIRLMLRK 309


>gi|169766094|ref|XP_001817518.1| hypothetical protein AOR_1_794174 [Aspergillus oryzae RIB40]
 gi|83765373|dbj|BAE55516.1| unnamed protein product [Aspergillus oryzae]
          Length = 375

 Score = 40.0 bits (92), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 30/120 (25%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G P G + E+YGP  +GKT+LAL     + + G    ++D    L         V L ++
Sbjct: 67  GIPCGHVTEVYGPPGAGKTSLALSVATSALRNGDKVIWIDTGSPLPK-------VRLASM 119

Query: 123 LISQPDTGEQAL-----------------EITDMLVRSGA------VDIIVIDSVAALTP 159
           L   PD     L                  +  +L+R           ++VIDSV+ L P
Sbjct: 120 LKKSPDATSSDLPEDPIKNLIYFHARSLPHLLALLIRPPKGFPPEDAKLLVIDSVSGLFP 179


>gi|4996226|dbj|BAA78377.1| Rad51 [Cynops pyrrhogaster]
          Length = 337

 Score = 40.0 bits (92), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 91/221 (41%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           V++GS  LD  L  GG   G I E++G   +GKT L  HT+A + +         G   +
Sbjct: 100 VTTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQLC-HTLAVTCQLPIDRGGGEGKAMY 157

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E                      LD++ YAR    D +  L+ Q            M
Sbjct: 158 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASA---------M 208

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           +  S    ++++DS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 209 MAES-RYALLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 261

Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++    MF + P+   GGN +   S+ RL +R+
Sbjct: 262 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 302


>gi|327311978|ref|YP_004338875.1| putative circadian clock protein KaiC [Thermoproteus uzoniensis
           768-20]
 gi|326948457|gb|AEA13563.1| putative circadian clock protein, KaiC [Thermoproteus uzoniensis
           768-20]
          Length = 291

 Score = 40.0 bits (92), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+G   LD AL  GG PKG  V   G    GK+ LA+H      K G    +V  E
Sbjct: 25  VERISTGIKELDDALE-GGIPKGSWVVATGEPGVGKSILAMHFAYAGLKAGDPVVYVTTE 83

Query: 105 HALDSIY--ARKLGVDL 119
                +   AR+LG+D 
Sbjct: 84  QEYRDVVVQARQLGMDF 100


>gi|325092525|gb|EGC45835.1| meiotic recombination protein dmc1 [Ajellomyces capsulatus H88]
          Length = 381

 Score = 40.0 bits (92), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 23/140 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IA 89
           M+LG Q    + +  +S+GS   D  L  GGF    I E+YG    GKT L+ HT   +A
Sbjct: 108 MELGHQR---KRVVKISTGSKQFDSILA-GGFQSMSISEVYGEFRCGKTQLS-HTMSVMA 162

Query: 90  QSQK----TGGTCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEIT 137
           Q  K      G  A++D E        +  A + GVD    L+N+  ++    E  LE+ 
Sbjct: 163 QLPKDMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELL 222

Query: 138 DMLVRS---GAVDIIVIDSV 154
           + L +    G   +++IDS+
Sbjct: 223 NTLSKEFVGGEYRLLIIDSI 242


>gi|310793292|gb|EFQ28753.1| hypothetical protein GLRG_03897 [Glomerella graminicola M1.001]
          Length = 350

 Score = 40.0 bits (92), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 106/247 (42%), Gaps = 41/247 (16%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G + E++G   +GK+ +  HT+A + +         G C +
Sbjct: 105 ITTGSKQLDTLLA-GGIETGSVTELFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 162

Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------ 146
           +D E     +     A + G+     L N+  ++    +  L+   +L ++GA+      
Sbjct: 163 IDTEGTFRPVRLLAVANRFGLSGEEVLDNVAYARAYNSDHQLQ---LLQQAGAMMCETRF 219

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++++DS  AL  R +  G  GE L   Q  L ++ +R L          +V  NQ+  +
Sbjct: 220 SLLIVDSATALY-RTDFLG-RGE-LSSRQTHL-AKFMRTLQRLADEFGIAVVITNQVVAQ 275

Query: 207 I----GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
           +      MF   P+   GGN +   S+ R+ +R      RV  I D   +  +     + 
Sbjct: 276 VDGGPSAMFNPDPKKPVGGNIIAHASTTRISLRKGRAETRVAKIYDSPCLPESDCLFAIN 335

Query: 256 KNKMASP 262
           ++ +  P
Sbjct: 336 EDGIGDP 342


>gi|315231902|ref|YP_004072338.1| hypothetical protein TERMP_02141 [Thermococcus barophilus MP]
 gi|315184930|gb|ADT85115.1| hypothetical protein TERMP_02141 [Thermococcus barophilus MP]
          Length = 238

 Score = 40.0 bits (92), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           +S+G  GLD  L  GG   GR+  I GP  SGKTTLA H + +  + G    +V
Sbjct: 9   ISTGVKGLD-ELIEGGLIPGRVYLITGPPGSGKTTLAFHFLLEGARHGEKGLYV 61


>gi|124027732|ref|YP_001013052.1| ATPase [Hyperthermus butylicus DSM 5456]
 gi|123978426|gb|ABM80707.1| predicted ATPase [Hyperthermus butylicus DSM 5456]
          Length = 274

 Score = 40.0 bits (92), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE + +G  G D  L  GG P+G  V + G   +GKT  ++H IA+  + G    +V  E
Sbjct: 8   IERLPTGVPGFD-KLIQGGIPRGFFVAVVGEPGTGKTIFSIHFIAEGIRQGDKNIYVTTE 66

Query: 105 HALDSI 110
              +SI
Sbjct: 67  ETRESI 72


>gi|258597225|ref|XP_001347762.2| Rad51 homolog [Plasmodium falciparum 3D7]
 gi|25991345|gb|AAN76809.1|AF452489_1 recombinase Rad51 [Plasmodium falciparum]
 gi|254832605|gb|AAN35675.2| Rad51 homolog [Plasmodium falciparum 3D7]
          Length = 350

 Score = 40.0 bits (92), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 98/211 (46%), Gaps = 33/211 (15%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-----QKTG--GTCAFV 101
           ++GS  LD AL  GG   G I E++G   +GK+ L  HT+A +     +++G  G C ++
Sbjct: 113 TTGSKQLD-ALLKGGIETGGITELFGEFRTGKSQLC-HTLAITCQLPIEQSGGEGKCLWI 170

Query: 102 DAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------D 147
           D E           A++ G+     L N+  ++    +     T++L+ + A+       
Sbjct: 171 DTEGTFRPERIVAIAKRYGLHPTDCLNNIAYAKAYNCDHQ---TELLIDASAMMADARFA 227

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++++DS  AL  R+E  G  GE L   Q+ L  + LR L          ++  NQ+  K+
Sbjct: 228 LLIVDSATALY-RSEYIG-RGE-LANRQSHL-CRFLRGLQRIADIYGVAVIITNQVVAKV 283

Query: 208 GV--MFGSPET-TTGGNALKFYSSVRLDIRR 235
               MFG  E    GGN +   S  RL +R+
Sbjct: 284 DAMSMFGGHEKIPIGGNIIAHASQTRLYLRK 314


>gi|241690305|ref|XP_002411756.1| DNA repair protein RAD51/RHP55, putative [Ixodes scapularis]
 gi|215504591|gb|EEC14085.1| DNA repair protein RAD51/RHP55, putative [Ixodes scapularis]
          Length = 354

 Score = 40.0 bits (92), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 65/144 (45%), Gaps = 23/144 (15%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG-----TC 98
           G   +S G   LD  LG GG P   + E+ G   SGKT   L     +Q++ G       
Sbjct: 84  GQSTLSFGCPILDRFLG-GGLPTRGVTELSGESGSGKTQFCLQLSLMAQRSLGDGMPIYV 142

Query: 99  AFVDAEHALDSIYARKLGVDL--------KNLLISQPDTGEQALEITDM------LVRSG 144
            ++  E        R++  +L         N+L+S    GE A+ +T +      L R+ 
Sbjct: 143 VYICTEDRFPDRRLRQMQRELGPAGRSLSDNVLVSH--VGELAMLMTCLETTLPSLRRTK 200

Query: 145 AVDIIVIDSVAALTPRAEIEGDMG 168
            V ++V+DSVAAL  R+E E D G
Sbjct: 201 RVGLLVLDSVAALF-RSEYEQDQG 223


>gi|254416769|ref|ZP_05030519.1| circadian clock protein KaiC [Microcoleus chthonoplastes PCC 7420]
 gi|196176509|gb|EDX71523.1| circadian clock protein KaiC [Microcoleus chthonoplastes PCC 7420]
          Length = 505

 Score = 40.0 bits (92), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 11/102 (10%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E IE V +G  G D+ L  GG PKGR   + G   S KT  A   + +  K G    FV 
Sbjct: 8   EFIEKVKTGISGFDL-LSEGGLPKGRTTLVAGTAGSAKTIFACQFLVEGIKEGQNGVFVT 66

Query: 103 AEHALDSIYA--RKLGVDLKN--------LLISQPDTGEQAL 134
            E +  +I    R  G D++          + + P TG + L
Sbjct: 67  FEESPQAIRKNMRGFGWDIEQWEAEKKWAFVDASPKTGNRPL 108


>gi|126723348|ref|NP_001075493.1| DNA repair protein RAD51 homolog 1 [Oryctolagus cuniculus]
 gi|6225914|sp|O77507|RAD51_RABIT RecName: Full=DNA repair protein RAD51 homolog 1
 gi|3387769|gb|AAC28561.1| Rad51 [Oryctolagus cuniculus]
          Length = 339

 Score = 40.0 bits (92), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 92/221 (41%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G I E++G   +GKT +  HT+A + +         G   +
Sbjct: 102 ITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQIC-HTLAVTCQLPIDRGGGEGKAMY 159

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E                      LD++ YAR    D +  L+ Q            M
Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASA---------M 210

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           +V S    ++++DS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 211 MVESRYA-LLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVTV 263

Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++    MF + P+   GGN +   S+ RL +R+
Sbjct: 264 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 304


>gi|221053592|ref|XP_002258170.1| Meiotic recombination protein DMC1-like protein [Plasmodium
           knowlesi strain H]
 gi|193808003|emb|CAQ38707.1| Meiotic recombination protein DMC1-like protein,putative
           [Plasmodium knowlesi strain H]
          Length = 347

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 92/209 (44%), Gaps = 27/209 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  LD  LG GG     I E++G    GKT +  HT+A S +         G   +
Sbjct: 110 ITTGSSSLDRTLG-GGIESMSITELFGENRCGKTQIC-HTLAVSAQLPRSAGGGNGKVCY 167

Query: 101 VDAEHALD----SIYARKLGVD----LKNLLISQPDTGE---QALEITDMLVRSGAVDII 149
           +D E           A + G+D    L N+L ++  T E   Q L ++   +      ++
Sbjct: 168 IDTEGTFRPEKICKIAERYGIDGEDVLDNILYARAFTHEHLYQLLAVSAAKMCEEPFALL 227

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           V+DS+ +L  R +  G  GE L   Q +L ++ L  L+    +    ++  NQ+    G 
Sbjct: 228 VVDSIISLF-RVDFSG-RGE-LSERQQKL-NKTLSVLSKLGEQFNIAVLITNQVMSDPGA 283

Query: 209 --VMFGSPETTTGGNALKFYSSVRLDIRR 235
                 +P    GG+ +   S+ RL +R+
Sbjct: 284 TMTFVANPMKPVGGHVIGHASTTRLSLRK 312


>gi|209946274|gb|ACI97368.1| spindle A [Drosophila simulans]
 gi|209946276|gb|ACI97369.1| spindle A [Drosophila simulans]
          Length = 211

 Score = 39.7 bits (91), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 9/67 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GTCAF 100
           +S+GS  LD  LG GG   G I EI+G    GKT L  HT+A       SQK G G C +
Sbjct: 99  LSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLC-HTLAVTCQLPISQKGGEGKCMY 156

Query: 101 VDAEHAL 107
           +D E+  
Sbjct: 157 IDTENTF 163


>gi|209946270|gb|ACI97366.1| spindle A [Drosophila simulans]
 gi|209946272|gb|ACI97367.1| spindle A [Drosophila simulans]
 gi|209946278|gb|ACI97370.1| spindle A [Drosophila simulans]
          Length = 211

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 9/67 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GTCAF 100
           +S+GS  LD  LG GG   G I EI+G    GKT L  HT+A       SQK G G C +
Sbjct: 99  LSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLC-HTLAVTCQLPISQKGGEGKCMY 156

Query: 101 VDAEHAL 107
           +D E+  
Sbjct: 157 IDTENTF 163


>gi|156848553|ref|XP_001647158.1| hypothetical protein Kpol_1036p43 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156117842|gb|EDO19300.1| hypothetical protein Kpol_1036p43 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 460

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
           E+ S+G LGLD ALG GG     I EIYG  S+GK+ LA+
Sbjct: 85  ELFSTGDLGLDEALG-GGIYTQCITEIYGESSTGKSQLAM 123


>gi|25012918|gb|AAN71546.1| RH24133p [Drosophila melanogaster]
          Length = 284

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 92/211 (43%), Gaps = 32/211 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GTCAF 100
           +S+GS  LD  LG GG   G I EI+G    GKT L  HT+A       SQK G G C +
Sbjct: 42  LSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLC-HTLAVTCQLPISQKGGEGKCMY 99

Query: 101 VDAEH--------ALDSIYARKLGVDLKNLLISQPDTGEQALEITDM---LVRSGAVDII 149
           +D E+        A+   Y       L N+  ++    +Q  ++  M   ++      ++
Sbjct: 100 IDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGMLFESRYALL 159

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           ++DS  AL  R++  G  GE L   Q  L    LR L          +V  NQ+   +  
Sbjct: 160 IVDSAMALY-RSDYIGR-GE-LAARQNHL-GLFLRMLQRLADEFGVAVVITNQVTASLD- 214

Query: 210 MFGSP-----ETTTGGNALKFYSSVRLDIRR 235
             G+P     +   GG+ +   S+ RL +R+
Sbjct: 215 --GAPGMFDAKKPIGGHIMAHSSTTRLYLRK 243


>gi|256268991|gb|EEU04334.1| Rad57p [Saccharomyces cerevisiae JAY291]
          Length = 460

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 23/134 (17%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
           G E  ++  + +D  LG G F  G I EI+G  S+GK+ L +      Q +      GG 
Sbjct: 96  GPECFTTADVAMDELLGGGIFTHG-ITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGK 154

Query: 98  CAFVDAE-----HALDSIYA-----RKLGVDLKNLL-ISQPDTGEQA----LEITDMLVR 142
           C ++  E       L+S+ +      KLG+   N+  +S  D   Q     +++  +L R
Sbjct: 155 CVYITTEGDLPTQRLESMLSSRPAYEKLGITQSNIFTVSCNDLINQEHIINVQLPILLER 214

Query: 143 S-GAVDIIVIDSVA 155
           S G++ +++IDS++
Sbjct: 215 SKGSIKLVIIDSIS 228


>gi|209946318|gb|ACI97390.1| spindle A [Drosophila melanogaster]
          Length = 211

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 9/67 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GTCAF 100
           +S+GS  LD  LG GG   G I EI+G    GKT L  HT+A       SQK G G C +
Sbjct: 99  LSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLC-HTLAVTCQLPISQKGGEGKCMY 156

Query: 101 VDAEHAL 107
           +D E+  
Sbjct: 157 IDTENTF 163


>gi|186474587|ref|YP_001863558.1| hypothetical protein Bphy_7576 [Burkholderia phymatum STM815]
 gi|184198546|gb|ACC76508.1| conserved hypothetical protein [Burkholderia phymatum STM815]
          Length = 251

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 1/105 (0%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
            VV +G  GL   L  GG+P   +V++   +  G   L L   A S  + GT AF++A H
Sbjct: 42  RVVDTGYPGLSKELPGGGWPLAALVDLLV-QQPGVGELRLLCPALSAASKGTIAFINAPH 100

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
             D +    +GV +  +++ +      AL   + ++R+G    +V
Sbjct: 101 QPDGLGLSYIGVPIDQVMLIKATKTADALWSVEQILRAGTCGSVV 145


>gi|84996649|ref|XP_953046.1| hypothetical protein [Theileria annulata]
 gi|65304042|emb|CAI76421.1| hypothetical protein TA08135 [Theileria annulata]
          Length = 445

 Score = 39.7 bits (91), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 8/136 (5%)

Query: 36  GSQGSIFEGIEV-VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS--Q 92
           G Q S+++ I+  +   +L +   + I     GR+  I GPESSGKT L L +IA+S   
Sbjct: 255 GHQKSVYDKIDKDIRILNLYIPFEVDIKSLELGRVTLICGPESSGKTVL-LRSIAKSWYH 313

Query: 93  KTGGTCAFVDAEHALDSIYARKLG----VDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
            T      ++ ++  D+  A   G    +D   LL       E  L+   +  +     +
Sbjct: 314 LTNSNHTSIELDYREDNTTAESCGYVINIDFNELLSELVGVSELYLKNIFVKAKYNKPCL 373

Query: 149 IVIDSVAALTPRAEIE 164
           +V D +  L  +  IE
Sbjct: 374 VVFDGIECLLTKVNIE 389


>gi|209946280|gb|ACI97371.1| spindle A [Drosophila melanogaster]
 gi|209946282|gb|ACI97372.1| spindle A [Drosophila melanogaster]
 gi|209946284|gb|ACI97373.1| spindle A [Drosophila melanogaster]
 gi|209946286|gb|ACI97374.1| spindle A [Drosophila melanogaster]
 gi|209946288|gb|ACI97375.1| spindle A [Drosophila melanogaster]
 gi|209946290|gb|ACI97376.1| spindle A [Drosophila melanogaster]
 gi|209946292|gb|ACI97377.1| spindle A [Drosophila melanogaster]
 gi|209946294|gb|ACI97378.1| spindle A [Drosophila melanogaster]
 gi|209946296|gb|ACI97379.1| spindle A [Drosophila melanogaster]
 gi|209946298|gb|ACI97380.1| spindle A [Drosophila melanogaster]
 gi|209946300|gb|ACI97381.1| spindle A [Drosophila melanogaster]
 gi|209946302|gb|ACI97382.1| spindle A [Drosophila melanogaster]
 gi|209946304|gb|ACI97383.1| spindle A [Drosophila melanogaster]
 gi|209946306|gb|ACI97384.1| spindle A [Drosophila melanogaster]
 gi|209946308|gb|ACI97385.1| spindle A [Drosophila melanogaster]
 gi|209946310|gb|ACI97386.1| spindle A [Drosophila melanogaster]
 gi|209946312|gb|ACI97387.1| spindle A [Drosophila melanogaster]
 gi|209946314|gb|ACI97388.1| spindle A [Drosophila melanogaster]
 gi|209946316|gb|ACI97389.1| spindle A [Drosophila melanogaster]
 gi|209946320|gb|ACI97391.1| spindle A [Drosophila melanogaster]
 gi|209946322|gb|ACI97392.1| spindle A [Drosophila melanogaster]
 gi|209946324|gb|ACI97393.1| spindle A [Drosophila melanogaster]
 gi|209946326|gb|ACI97394.1| spindle A [Drosophila melanogaster]
 gi|209946328|gb|ACI97395.1| spindle A [Drosophila melanogaster]
 gi|209946330|gb|ACI97396.1| spindle A [Drosophila melanogaster]
 gi|209946332|gb|ACI97397.1| spindle A [Drosophila melanogaster]
 gi|209946334|gb|ACI97398.1| spindle A [Drosophila melanogaster]
 gi|209946336|gb|ACI97399.1| spindle A [Drosophila melanogaster]
          Length = 211

 Score = 39.7 bits (91), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 9/67 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GTCAF 100
           +S+GS  LD  LG GG   G I EI+G    GKT L  HT+A       SQK G G C +
Sbjct: 99  LSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLC-HTLAVTCQLPISQKGGEGKCMY 156

Query: 101 VDAEHAL 107
           +D E+  
Sbjct: 157 IDTENTF 163


>gi|190405016|gb|EDV08283.1| DNA repair protein RAD57 [Saccharomyces cerevisiae RM11-1a]
 gi|259145249|emb|CAY78513.1| Rad57p [Saccharomyces cerevisiae EC1118]
          Length = 460

 Score = 39.7 bits (91), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 23/134 (17%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
           G E  ++  + +D  LG G F  G I EI+G  S+GK+ L +      Q +      GG 
Sbjct: 96  GPECFTTADVAMDELLGGGIFTHG-ITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGK 154

Query: 98  CAFVDAE-----HALDSIYA-----RKLGVDLKNLL-ISQPDTGEQA----LEITDMLVR 142
           C ++  E       L+S+ +      KLG+   N+  +S  D   Q     +++  +L R
Sbjct: 155 CVYITTEGDLPTQRLESMLSSRPAYEKLGITQSNIFTVSCNDLINQEHIINVQLPILLER 214

Query: 143 S-GAVDIIVIDSVA 155
           S G++ +++IDS++
Sbjct: 215 SKGSIKLVIIDSIS 228


>gi|6320207|ref|NP_010287.1| Rad57p [Saccharomyces cerevisiae S288c]
 gi|131784|sp|P25301|RAD57_YEAST RecName: Full=DNA repair protein RAD57
 gi|172345|gb|AAA34950.1| DNA repair protein [Saccharomyces cerevisiae]
 gi|642809|emb|CAA88064.1| Rad57p [Saccharomyces cerevisiae]
 gi|285811028|tpg|DAA11852.1| TPA: Rad57p [Saccharomyces cerevisiae S288c]
          Length = 460

 Score = 39.7 bits (91), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 23/134 (17%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
           G E  ++  + +D  LG G F  G I EI+G  S+GK+ L +      Q +      GG 
Sbjct: 96  GPECFTTADVAMDELLGGGIFTHG-ITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGK 154

Query: 98  CAFVDAE-----HALDSIYA-----RKLGVDLKNLL-ISQPDTGEQA----LEITDMLVR 142
           C ++  E       L+S+ +      KLG+   N+  +S  D   Q     +++  +L R
Sbjct: 155 CVYITTEGDLPTQRLESMLSSRPAYEKLGITQSNIFTVSCNDLINQEHIINVQLPILLER 214

Query: 143 S-GAVDIIVIDSVA 155
           S G++ +++IDS++
Sbjct: 215 SKGSIKLVIIDSIS 228


>gi|219127959|ref|XP_002184192.1| Rad51 DNA recombination/repair protein [Phaeodactylum tricornutum
           CCAP 1055/1]
 gi|217404423|gb|EEC44370.1| Rad51 DNA recombination/repair protein [Phaeodactylum tricornutum
           CCAP 1055/1]
          Length = 456

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 6/109 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           F  +  + +G   LD AL  GG   G I E+ GP   GKT LA+     + +    C +V
Sbjct: 154 FSRMRYLPTGLEPLDQALR-GGVRVGTITELVGPAGVGKTQLAMQLCIMASRYAQGCVYV 212

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQA--LEITDMLVRSGAVDI 148
           D E  L     R++ +   + +   PDT      L  +D  +    VDI
Sbjct: 213 DTEKKLSVARLREIALQRSSRV---PDTNTHGEFLYPSDTTLVESTVDI 258


>gi|55251281|emb|CAH69022.1| novel protein (zgc:77754) [Danio rerio]
          Length = 340

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 91/219 (41%), Gaps = 47/219 (21%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS------QKTG-GTCAF 100
           +S+GS  LD  L  GG   G I E++G   +GKT L  HT+A +      Q  G G   +
Sbjct: 103 ISTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQLC-HTLAVTCQLPIDQGGGEGKAMY 160

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E                      LD++ YAR    D +  L+ Q            M
Sbjct: 161 IDTEGTFRPERLLAVAERYGLVGSDVLDNVAYARAFNTDHQTQLLYQASA---------M 211

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           +  S    ++++DS  AL  R +  G  GE L   Q  L  + LR L          +V 
Sbjct: 212 MTES-RYALLIVDSATALY-RTDYSG-RGE-LSARQGHL-GRFLRMLLRLADEFGVAVVI 266

Query: 200 INQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
            NQ+  ++    MF + P+   GGN L   S+ RL +R+
Sbjct: 267 TNQVVAQVDGAAMFSADPKKPIGGNILAHASTTRLYLRK 305


>gi|116490415|ref|YP_809959.1| DNA repair protein RadA [Oenococcus oeni PSU-1]
 gi|116091140|gb|ABJ56294.1| DNA replication and repair protein RadA [Oenococcus oeni PSU-1]
          Length = 470

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 23/152 (15%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113
           L+  LG GG   G ++ I G    GK+TL L    Q  + GG+  +V  E + + I  R 
Sbjct: 80  LNRVLG-GGIVPGSLILIGGDPGIGKSTLMLQVSGQLAENGGSVLYVSGEESDNQIKLRA 138

Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            +LGV   + ++  P+T    +E    +V+    D +VIDSV  +              P
Sbjct: 139 DRLGVGSDSFIV-YPETD---MEQIKSIVQQIEPDYLVIDSVQTMQE------------P 182

Query: 173 GMQARLMSQA-LRKLTSS---ISRSKCILVFI 200
            +Q+ + S A +R++T++   I+++  I VFI
Sbjct: 183 DLQSPIGSVAQIREVTANLMQIAKTNAITVFI 214


>gi|296242926|ref|YP_003650413.1| putative circadian clock protein KaiC [Thermosphaera aggregans DSM
           11486]
 gi|296095510|gb|ADG91461.1| putative circadian clock protein, KaiC [Thermosphaera aggregans DSM
           11486]
          Length = 256

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 3/81 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E + +G  GLD  L  GG PKG  V   G   +GKT  ++   A     G  C +V  E
Sbjct: 1   MERLPTGVKGLD-ELIEGGIPKGFTVAAVGEPGTGKTVFSIQFTATGLARGEKCIYVTTE 59

Query: 105 HALDSIY--ARKLGVDLKNLL 123
            + +SI   A +LG D +  L
Sbjct: 60  ESRESIINQAARLGFDFEEAL 80


>gi|255954943|ref|XP_002568224.1| Pc21g11930 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589935|emb|CAP96090.1| Pc21g11930 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 351

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 98/222 (44%), Gaps = 34/222 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQK----TGGTCAF 100
           +S+GS   D  L  GGF    I E++G    GKT L+ HT   +AQ  K      G  A+
Sbjct: 112 ISTGSKQFDAILN-GGFQSMSISEVFGEFRCGKTQLS-HTMSVVAQLPKELGGAAGRVAY 169

Query: 101 VDAEHALD----SIYARKLGVDL----KNLLISQPDTGEQALEITDMLVRS---GAVDII 149
           +D E        +  A + G+D     +N+  ++    E  LE+ + L ++   G   ++
Sbjct: 170 IDTEGTFRPERIAQIAERFGLDPDTAQENISYARALNSEHQLELLNTLSQAFVGGEYRLL 229

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           VIDS+     R +  G  GE L   Q +L +Q L KL          ++  NQ++   G 
Sbjct: 230 VIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFNVCVLMTNQVQSDPGA 285

Query: 209 -VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241
             +F   +     GG+ L   S+ R+ +R      RV  I+D
Sbjct: 286 SALFAGADGRKPVGGHVLAHASTTRVLLRKGRGDERVAKIQD 327


>gi|71997295|ref|NP_001023465.1| RADiation sensitivity abnormal/yeast RAD-related family member
           (rad-51) [Caenorhabditis elegans]
 gi|15718273|emb|CAB61038.2| C. elegans protein Y43C5A.6a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 395

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 94/215 (43%), Gaps = 38/215 (17%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           + +GS  LD  LG GG   G I E+YG   +GKT L  H++A   +         G C +
Sbjct: 156 IRTGSASLDRLLG-GGIETGSITEVYGEYRTGKTQLC-HSLAVLCQLPIDMGGGEGKCMY 213

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------ 146
           +D             A++  +D    L+N+ +++    E    +  +++R+GA+      
Sbjct: 214 IDTNATFRPERIIAIAQRYNMDSAHVLENIAVARAYNSEH---LMALIIRAGAMMSESRY 270

Query: 147 DIIVIDSVAALTPRAEI--EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            ++++D   A   R E    GD+ E    + A L  + L KL      +   ++  NQ+ 
Sbjct: 271 AVVIVDCATA-HFRNEYTGRGDLAERQMKLSAFL--KCLAKLADEYGVA---VIITNQVV 324

Query: 205 MKI---GVMF-GSPETTTGGNALKFYSSVRLDIRR 235
            ++     MF    +   GG+ +   S+ RL +R+
Sbjct: 325 AQVDGGASMFQADAKKPIGGHIIAHMSTTRLYLRK 359


>gi|77553662|gb|ABA96458.1| Meiotic recombination protein DMC1, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 442

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 26/208 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  LD  LG GG     I E +G   SGKT LA HT+  S +         G  A+
Sbjct: 108 ITTGSQALDKLLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSAQLPIHMHGGNGKVAY 165

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149
           +D E           A + G+D    L N++ ++  T E    +   L    A +   ++
Sbjct: 166 IDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLL 225

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           ++DSV AL  R +  G  GE L   Q +L +Q L +LT         +   NQ+      
Sbjct: 226 IVDSVIALF-RVDFSGR-GE-LAERQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
           G+     +   GG+ L   +++RL +R+
Sbjct: 282 GMFITDLKKPAGGHVLAHAATIRLMLRK 309


>gi|308233966|ref|ZP_07664703.1| RecA protein [Atopobium vaginae DSM 15829]
          Length = 64

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDI 57
          ++ K LE   ++I++ +GKG+IM+ G  G   E +E + +G+L LD+
Sbjct: 19 ERDKQLETTTAEIEKRFGKGSIMKYGDSGPDLE-VEAIPTGALSLDV 64


>gi|21227192|ref|NP_633114.1| circadian clock protein KaiC [Methanosarcina mazei Go1]
 gi|20905531|gb|AAM30786.1| putative DNA integration/recombination/invertion protein
           [Methanosarcina mazei Go1]
          Length = 474

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 12/125 (9%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +S+G   LD  LG  G+ +G  + I G   SGKT+ A      + +   +C +   E 
Sbjct: 159 ERISTGIPRLDTMLGGQGYYRGTTILISGTAGSGKTSFAAQFCKAACEREESCLYFAYEE 218

Query: 106 ALDSIY--ARKLGVDLKNLL--------ISQPDTGEQALEITDM--LVRSGAVDIIVIDS 153
           + D I    R +G+DL+  L         S+P      + +  M   + +   +++VID 
Sbjct: 219 SPDQIIRNMRSIGIDLQPYLDSGLLKIHASRPMAYGLEMHLITMRKFLDTFKPNVVVIDP 278

Query: 154 VAALT 158
           ++ LT
Sbjct: 279 ISNLT 283


>gi|157825869|ref|YP_001493589.1| DNA repair protein RadA [Rickettsia akari str. Hartford]
 gi|157799827|gb|ABV75081.1| predicted repair protein [Rickettsia akari str. Hartford]
          Length = 446

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 7/128 (5%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           L+  LG GG   G  + I G    GK+TL L   A +  +   C ++  E +LD I  R 
Sbjct: 73  LNKVLG-GGLVLGSAILIGGDPGIGKSTLLLQLAASNFVSKINCLYITGEESLDQIKLRA 131

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           + ++L N              I  M      +D++VIDS+  +T +A       +S PG 
Sbjct: 132 IRLNLTNYNTDILAATNVEDIIASMEANKNNIDLVVIDSIQTITTKAL------QSPPGT 185

Query: 175 QARLMSQA 182
            +++ + A
Sbjct: 186 VSQIRTCA 193


>gi|126179861|ref|YP_001047826.1| DNA repair and recombination protein RadA [Methanoculleus
           marisnigri JR1]
 gi|166218763|sp|A3CWU4|RADA_METMJ RecName: Full=DNA repair and recombination protein radA
 gi|125862655|gb|ABN57844.1| DNA repair and recombination protein RadA [Methanoculleus
           marisnigri JR1]
          Length = 324

 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 80/206 (38%), Gaps = 41/206 (19%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHA--------- 106
           GG     I E+YG   SGK+ L       +Q        GG   +VD E+          
Sbjct: 95  GGLETQAITEVYGEFGSGKSQLVHQMAVNAQLPEELGGLGGGVIYVDTENTFRPERIEQM 154

Query: 107 ----------------LDSIY-ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
                           L+ I+ AR    D + LL+         L  +D  VR     + 
Sbjct: 155 LNGLPEEAEIGEIEEVLERIHVARAHSSDHQMLLLETARELANDLRTSDYPVR-----LF 209

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDS+ +L  R+E  G  G   P  Q   +++ +  L   I     + +  NQ+    G+
Sbjct: 210 VIDSLTSLF-RSEYAG-RGTLAPRQQK--LNRHMHDLLKLIDDHNAVGLVTNQVMSNPGI 265

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRR 235
           +FG P    GGN +   ++ RL +R+
Sbjct: 266 LFGDPTKPIGGNIVGHTATFRLYLRK 291


>gi|300311575|ref|YP_003775667.1| hypothetical protein Hsero_2260 [Herbaspirillum seropedicae SmR1]
 gi|300074360|gb|ADJ63759.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 287

 Score = 39.7 bits (91), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 6/110 (5%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESS-GKTTLALHTIAQSQK-----TGGTCAFV 101
           VSSG   LD  L   G+P G ++E+  P+   G+  L    +AQ Q+       G  A +
Sbjct: 71  VSSGFEALDAELPGRGWPTGVLIELLLPQDGVGELRLLRPLLAQPQRLRPGAPSGRIALL 130

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
            A HA+++     +GV    LL  Q DT   A    + ++R+ +   +++
Sbjct: 131 QAPHAINAPGWAAMGVPATRLLQLQADTPVDACWAAEQVLRADSCQALLM 180


>gi|119716127|ref|YP_923092.1| hypothetical protein Noca_1895 [Nocardioides sp. JS614]
 gi|119536788|gb|ABL81405.1| conserved hypothetical protein [Nocardioides sp. JS614]
          Length = 228

 Score = 39.7 bits (91), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 82  TLALHTIAQSQKTGGTCAFVD-AEHALDSIYARKLGVDL-KNLLISQPDTGEQALEITDM 139
           +LAL  +A   + GG CA V   +   ++ YA  LGVDL + +L+  PD G+Q LE+T  
Sbjct: 57  SLALALMAGPSRAGGWCAVVGVGDFGAEAAYA--LGVDLGRTVLV--PDPGDQWLEVTAA 112

Query: 140 LVRSGAVDII 149
           LV    V +I
Sbjct: 113 LVDVATVVVI 122


>gi|147921252|ref|YP_684934.1| ATPase [uncultured methanogenic archaeon RC-I]
 gi|110620330|emb|CAJ35608.1| predicted ATPase (RecA family) [uncultured methanogenic archaeon
           RC-I]
          Length = 491

 Score = 39.7 bits (91), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 47/106 (44%), Gaps = 6/106 (5%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
           G + V++G  GLD  L  GG PKG  V + GP  +GKT LAL         G    FV  
Sbjct: 14  GKDTVTTGIEGLDELL-CGGLPKGSTVLLSGPPGAGKTVLALQYAFYHASRGERVLFVST 72

Query: 104 EHALDSIYARKLGVDLKNL-LISQPDTGEQALEITDMLVRSGAVDI 148
              L  +      +   NL LIS    G   +E  D  ++ G V++
Sbjct: 73  CEPLYKVNRYASSLSFYNLDLIS----GGINMEFYDPKIKRGYVEL 114


>gi|110742988|dbj|BAE99388.1| RAD51 homolog [Arabidopsis thaliana]
          Length = 342

 Score = 39.7 bits (91), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 92/221 (41%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           ++SGS  LD  L  GG   G I E+YG   SGKT L  HT+  + +         G   +
Sbjct: 105 ITSGSRELDKVLE-GGIETGSITELYGEFRSGKTQLC-HTLCVTCQLPMDQGGGEGKAMY 162

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           + AE                      L+++ YAR    D ++ L+         LE   M
Sbjct: 163 IGAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL---------LEAASM 213

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           ++ +    ++++DS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 214 MIET-RFALLIVDSATALY-RTDFSG-RGE----LSARQMHLAKFLRSLQKLADEFGVAV 266

Query: 198 VFINQMRMKI--GVMFGSPE-TTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++    +F  P+    GGN +   ++ RL +R+
Sbjct: 267 VITNQVVAQVDGSALFAGPQFKPIGGNIMAHATTTRLALRK 307


>gi|7509776|pir||T26822 hypothetical protein Y43C5A.6 - Caenorhabditis elegans
          Length = 391

 Score = 39.7 bits (91), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 94/215 (43%), Gaps = 38/215 (17%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           + +GS  LD  LG GG   G I E+YG   +GKT L  H++A   +         G C +
Sbjct: 152 IRTGSASLDRLLG-GGIETGSITEVYGEYRTGKTQLC-HSLAVLCQLPIDMGGGEGKCMY 209

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------ 146
           +D             A++  +D    L+N+ +++    E    +  +++R+GA+      
Sbjct: 210 IDTNATFRPERIIAIAQRYNMDSAHVLENIAVARAYNSEH---LMALIIRAGAMMSESRY 266

Query: 147 DIIVIDSVAALTPRAEI--EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            ++++D   A   R E    GD+ E    + A L  + L KL      +   ++  NQ+ 
Sbjct: 267 AVVIVDCATA-HFRNEYTGRGDLAERQMKLSAFL--KCLAKLADEYGVA---VIITNQVV 320

Query: 205 MKI---GVMF-GSPETTTGGNALKFYSSVRLDIRR 235
            ++     MF    +   GG+ +   S+ RL +R+
Sbjct: 321 AQVDGGASMFQADAKKPIGGHIIAHMSTTRLYLRK 355


>gi|261868436|ref|YP_003256358.1| DNA repair protein RadA [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261413768|gb|ACX83139.1| DNA repair protein RadA [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 457

 Score = 39.7 bits (91), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 10/112 (8%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQKTGGTCAFVDAEHAL 107
           SSG   LD  LG GG   G  + I G   +GK+TL L  +   SQK   T  +V  E +L
Sbjct: 75  SSGFFELDRVLG-GGVVPGSAILIGGHPGAGKSTLLLQVMCNLSQKM--TALYVTGEESL 131

Query: 108 DSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
             +   A++LG+  + L +    + EQ   + D L       IIVIDS+  +
Sbjct: 132 QQVAMRAKRLGLPPEKLNMLSETSVEQICNLADQL----KPQIIVIDSIQVM 179


>gi|149692472|ref|XP_001503572.1| PREDICTED: similar to DNA repair protein RAD51 homolog 1 [Equus
           caballus]
          Length = 339

 Score = 39.7 bits (91), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 92/221 (41%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G I E++G   +GKT +  HT+A + +         G   +
Sbjct: 102 ITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQIC-HTLAVTCQLPIDRGGGEGKAMY 159

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E                      LD++ YAR    D +  L+ Q            M
Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASA---------M 210

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           +V S    ++++DS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 211 MVES-RYALLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 263

Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++    MF + P+   GGN +   S+ RL +R+
Sbjct: 264 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 304


>gi|47086005|ref|NP_998371.1| DNA repair protein RAD51 homolog 1 [Danio rerio]
 gi|38571810|gb|AAH62849.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [Danio rerio]
          Length = 338

 Score = 39.7 bits (91), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 91/219 (41%), Gaps = 47/219 (21%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS------QKTG-GTCAF 100
           +S+GS  LD  L  GG   G I E++G   +GKT L  HT+A +      Q  G G   +
Sbjct: 101 ISTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQLC-HTLAVTCQLPIDQGGGEGKAMY 158

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E                      LD++ YAR    D +  L+ Q            M
Sbjct: 159 IDTEGTFRPERLLAVAERYGLVGSDVLDNVAYARAFNTDHQTQLLYQASA---------M 209

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           +  S    ++++DS  AL  R +  G  GE L   Q  L  + LR L          +V 
Sbjct: 210 MTES-RYALLIVDSATALY-RTDYSG-RGE-LSARQGHL-GRFLRMLLRLADEFGVAVVI 264

Query: 200 INQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
            NQ+  ++    MF + P+   GGN L   S+ RL +R+
Sbjct: 265 TNQVVAQVDGAAMFSADPKKPIGGNILAHASTTRLYLRK 303


>gi|293390376|ref|ZP_06634710.1| DNA repair protein RadA [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290950910|gb|EFE01029.1| DNA repair protein RadA [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 457

 Score = 39.7 bits (91), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 10/112 (8%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQKTGGTCAFVDAEHAL 107
           SSG   LD  LG GG   G  + I G   +GK+TL L  +   SQK   T  +V  E +L
Sbjct: 75  SSGFFELDRVLG-GGVVPGSAILIGGHPGAGKSTLLLQVMCNLSQKM--TALYVTGEESL 131

Query: 108 DSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
             +   A++LG+  + L +    + EQ   + D L       IIVIDS+  +
Sbjct: 132 QQVAMRAKRLGLPPEKLNMLSETSVEQICNLADQL----KPQIIVIDSIQVM 179


>gi|167646466|ref|YP_001684129.1| DNA repair protein RadA [Caulobacter sp. K31]
 gi|167348896|gb|ABZ71631.1| DNA repair protein RadA [Caulobacter sp. K31]
          Length = 460

 Score = 39.7 bits (91), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 16/131 (12%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR--KLGVDL 119
           GG   G  + I G    GK+TL L  +A++   G  CA++  E A+  I  R  ++G   
Sbjct: 84  GGVVPGSAILIGGDPGVGKSTLLLEVVAKASLKGVNCAYISGEEAVAQIRGRAERMGFAQ 143

Query: 120 KNLLISQPDTGEQAL-EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG--MQA 176
             + ++     E +L +I D L R    D++VIDS+  +        D  E+ PG   Q 
Sbjct: 144 APVKLAA----ESSLRDILDGLKRDN-FDLVVIDSIQTMW------SDAHEAGPGTVTQV 192

Query: 177 RLMSQALRKLT 187
           R  +Q L +L 
Sbjct: 193 RACAQELVRLA 203


>gi|16082126|ref|NP_394563.1| DNA repair and recombination protein RadA [Thermoplasma acidophilum
           DSM 1728]
 gi|13878691|sp|Q9HJ68|RADA_THEAC RecName: Full=DNA repair and recombination protein radA
 gi|10640417|emb|CAC12231.1| probable DNA repair protein Rad51 (RadA) [Thermoplasma acidophilum]
          Length = 323

 Score = 39.7 bits (91), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 92/208 (44%), Gaps = 22/208 (10%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----LALHTIAQSQKTG--GTC 98
           I+ +++GS  LD  LG GG     I E +G   SGKT     LA++     +K G     
Sbjct: 87  IQKLTTGSKNLDDLLG-GGLETQAITEFFGEFGSGKTQIMHQLAVNCTLPKEKGGFDSDV 145

Query: 99  AFVDAEHALDS----IYARKLGVD----LKNLLISQP-DTGEQAL--EITDMLVRSGAVD 147
             +D E+          A+  G D    LK + +++  ++  Q L  E      +   + 
Sbjct: 146 MMIDTENTFRPERIIQMAKSKGADPDETLKRIHVARAYNSHHQILLAEKAQDTAKEYNIK 205

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++++DS+ A   R+E    +G      + +L+++ +  L    +    ++   NQ+  + 
Sbjct: 206 LLIVDSLTAHF-RSEY---VGRGSLAERQQLLNKHMHDLLRFGTIYNAVIAVTNQVSARP 261

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
            V FG P    GGN +   ++ R+ +R+
Sbjct: 262 DVFFGDPMAPIGGNIVGHTATFRIYLRK 289


>gi|313125445|ref|YP_004035709.1| reca-superfamily ATPase possibly involved in signal transduction
           [Halogeometricum borinquense DSM 11551]
 gi|312291810|gb|ADQ66270.1| RecA-superfamily ATPase possibly involved in signal transduction
           [Halogeometricum borinquense DSM 11551]
          Length = 234

 Score = 39.7 bits (91), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           + SG  G D  L  GGF  GR+  + GP  SGKTT     +A+  + G  C ++
Sbjct: 3   IPSGVSGFD-HLIQGGFLPGRLYVLSGPPGSGKTTFTTQYVAEGLRNGENCMYI 55


>gi|327280164|ref|XP_003224823.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Anolis
           carolinensis]
          Length = 339

 Score = 39.7 bits (91), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 91/221 (41%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G I E++G   +GKT L  HT+A + +         G   +
Sbjct: 102 ITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQLC-HTLAVTCQLPIDRGGGEGKAMY 159

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E                      LD++ YAR    D +  L+ Q            M
Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASA---------M 210

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           +  S    ++++DS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 211 MTESRYA-LLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 263

Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++    MF + P+   GGN +   S+ RL +R+
Sbjct: 264 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 304


>gi|6755276|ref|NP_035364.1| DNA repair protein RAD51 homolog 1 [Mus musculus]
 gi|585772|sp|Q08297|RAD51_MOUSE RecName: Full=DNA repair protein RAD51 homolog 1; AltName:
           Full=RAD51 homolog A
 gi|397831|dbj|BAA02961.1| MmRad51 [Mus musculus]
 gi|407349|dbj|BAA02718.1| Rad51 protein [Mus musculus]
 gi|12847236|dbj|BAB27489.1| unnamed protein product [Mus musculus]
 gi|20073272|gb|AAH27384.1| RAD51 homolog (S. cerevisiae) [Mus musculus]
 gi|26345412|dbj|BAC36357.1| unnamed protein product [Mus musculus]
 gi|74185375|dbj|BAE30162.1| unnamed protein product [Mus musculus]
 gi|74185412|dbj|BAE30179.1| unnamed protein product [Mus musculus]
 gi|126540733|emb|CAM45951.1| RAD51 homolog (S. cerevisiae) [Mus musculus]
 gi|148695989|gb|EDL27936.1| RAD51 homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
 gi|1093114|prf||2102359A RAD51-like protein
          Length = 339

 Score = 39.7 bits (91), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 92/221 (41%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G I E++G   +GKT +  HT+A + +         G   +
Sbjct: 102 ITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQIC-HTLAVTCQLPIDRGGGEGKAMY 159

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E                      LD++ YAR    D +  L+ Q            M
Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASA---------M 210

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           +V S    ++++DS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 211 MVES-RYALLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 263

Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++    MF + P+   GGN +   S+ RL +R+
Sbjct: 264 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 304


>gi|254282571|ref|ZP_04957539.1| conserved hypothetical protein [gamma proteobacterium NOR51-B]
 gi|219678774|gb|EED35123.1| conserved hypothetical protein [gamma proteobacterium NOR51-B]
          Length = 276

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 3/110 (2%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH--TIAQSQKTGGTCA 99
           + G + V +G   LD A+ +GG+P+   +E+   +S G  ++ L   T+ +  + G   A
Sbjct: 70  WHGTDSVPTGYTSLDNAIQLGGWPQRGSIEVLS-DSCGMGSMGLFMPTMEKLSEQGRWQA 128

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           F+   +   +      G+D + +L+  P   E+ L  T+  +RS     +
Sbjct: 129 FIAPPYTPYAPLLAARGIDTRQILMVHPRNREELLWATEQALRSTTCSAV 178


>gi|323702175|ref|ZP_08113842.1| putative circadian clock protein, KaiC [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532862|gb|EGB22734.1| putative circadian clock protein, KaiC [Desulfotomaculum
           nigrificans DSM 574]
          Length = 467

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 53/115 (46%), Gaps = 15/115 (13%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           G  GLD  L  GGF +G I  I G   +GKT LAL  +    +      F+  E  +  +
Sbjct: 242 GITGLDEMLN-GGFREGTITLISGGTGTGKTALALKFLLDGAEKCENGLFLSFEEPVSQL 300

Query: 111 Y--ARKLG-----------VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
              AR+LG           +D+K +   + D  + A EI DM V S  +D +VID
Sbjct: 301 IDNARQLGWETDKYLADGRLDIKFISPIELDVDKHAFEILDM-VSSKKIDRLVID 354


>gi|291562184|emb|CBL41000.1| RecA-family ATPase [butyrate-producing bacterium SS3/4]
          Length = 633

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 95/238 (39%), Gaps = 45/238 (18%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA-----------FVDAEHAL-DSIYA 112
           P G++  + G    GKTT AL  +A +  TGGT             +  AE  L D++  
Sbjct: 330 PFGKVTIVQGNPGEGKTTFALR-LAAACTTGGTLPGMKPLPPFQVIYQTAEDGLGDTVKP 388

Query: 113 R--KLGVDLKNLLISQPDTGEQALEITD----MLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           R  +   DL  +L+   D  +Q L ++D      +R     +I++D + A          
Sbjct: 389 RLMEAEADLDRVLVI--DEAKQELSLSDERIERAIRQTGARLIILDPIQAY--------- 437

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MGE     +A  +    R+L     R+ C ++ I  +        G      G  ++ F 
Sbjct: 438 MGEKADMNRANEVRPIFRRLAEVAERTGCAVILIGHLNKAA----GGQSAYRGLGSIDFR 493

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVV---KNKMASPFKQVEFDIMYGEGISFFGE 281
           ++ R  +  +G +K        +  V+VV   K+ +A   K V F +    G  + GE
Sbjct: 494 AAAR-SVLLIGRVK-------REPNVRVVIHDKSSLAPEGKPVAFCLDPETGFEWIGE 543


>gi|269925295|ref|YP_003321918.1| Non-specific serine/threonine protein kinase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269788955|gb|ACZ41096.1| Non-specific serine/threonine protein kinase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 461

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 17/125 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL----ALHTIAQSQKTGGTCAFVDA 103
           +S+G  G D+ LG GG PKG  V + GP   GKT L    A H  +Q +K     A  + 
Sbjct: 4   ISTGIPGFDVLLG-GGIPKGSFVLVGGPPGVGKTILVTQMAFHHASQGKKVVMLTALTET 62

Query: 104 EHAL-----------DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
              L           D++    L +     L+ +    +   EI   ++  G V+++VID
Sbjct: 63  NAKLIAHLSTLAFFDDALLGNTLQILNIQKLLQEEGLDKTLAEIRSTVIEQG-VELLVID 121

Query: 153 SVAAL 157
           S  +L
Sbjct: 122 SFRSL 126


>gi|114051383|ref|NP_001039644.1| DNA repair protein RAD51 homolog 1 [Bos taurus]
 gi|301754892|ref|XP_002913265.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Ailuropoda
           melanoleuca]
 gi|116255982|sp|Q2KJ94|RAD51_BOVIN RecName: Full=DNA repair protein RAD51 homolog 1
 gi|86821651|gb|AAI05459.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [Bos taurus]
 gi|296483320|gb|DAA25435.1| DNA repair protein RAD51 homolog 1 [Bos taurus]
          Length = 339

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 92/221 (41%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G I E++G   +GKT +  HT+A + +         G   +
Sbjct: 102 ITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQIC-HTLAVTCQLPIDRGGGEGKAMY 159

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E                      LD++ YAR    D +  L+ Q            M
Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASA---------M 210

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           +V S    ++++DS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 211 MVES-RYALLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 263

Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++    MF + P+   GGN +   S+ RL +R+
Sbjct: 264 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 304


>gi|157822405|ref|NP_001102674.1| DNA repair protein RAD51 homolog 1 [Rattus norvegicus]
 gi|149022997|gb|EDL79891.1| similar to DNA repair protein RAD51 homolog 1 (predicted) [Rattus
           norvegicus]
 gi|197246432|gb|AAI68875.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [Rattus
           norvegicus]
          Length = 339

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 92/221 (41%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G I E++G   +GKT +  HT+A + +         G   +
Sbjct: 102 ITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQIC-HTLAVTCQLPIDRGGGEGKAMY 159

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E                      LD++ YAR    D +  L+ Q            M
Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASA---------M 210

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           +V S    ++++DS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 211 MVES-RYALLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 263

Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++    MF + P+   GGN +   S+ RL +R+
Sbjct: 264 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 304


>gi|84393896|ref|ZP_00992639.1| hypothetical protein V12B01_06666 [Vibrio splendidus 12B01]
 gi|84375493|gb|EAP92397.1| hypothetical protein V12B01_06666 [Vibrio splendidus 12B01]
          Length = 235

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 8/119 (6%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           +Q  +QGS        S+G   LD  L  GGFP   ++E+   +  G+  L    +AQ Q
Sbjct: 18  LQSTAQGS------TTSTGYPQLDKQLD-GGFPTHGVIEVESQQGIGELRLLTPYLAQ-Q 69

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
            +     F++    + + +    G++L+N+L+ QP     AL   +  ++SGA   +++
Sbjct: 70  NSQKLAIFINPPGKICAEFFSSQGIELENILVIQPQRDLDALWAAEQCLKSGACHSVLL 128


>gi|294625167|ref|ZP_06703810.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294664670|ref|ZP_06730004.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292600539|gb|EFF44633.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292605554|gb|EFF48871.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 505

 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +++GS GLD  L  GG P  R+  + G   +GKTTLAL  +      G +C +V     +
Sbjct: 12  ITTGSTGLDTILR-GGLPANRLYLLEGQPGAGKTTLALQFLLDGAAKGESCLYVTLSETI 70

Query: 108 DSI 110
           + +
Sbjct: 71  EEL 73



 Score = 37.7 bits (86), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 25/177 (14%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E V SG   +D AL  GG  +G    + GP  SGKT LAL  +  + + G  C  ++ + 
Sbjct: 253 EPVGSGVERID-ALLHGGPLRGTSTLVTGPAGSGKTNLALQFVVAACERGEHCCVLEFDE 311

Query: 106 ALDSIYARK--LGVDLKNLL------ISQPDTGEQALEITDMLVRSG----AVDIIVIDS 153
              ++  R   LG+DL+  +      + Q D  E         VR      A  I+VIDS
Sbjct: 312 RTGTLLKRAEGLGMDLRKYMDAGLLELHQMDPAEVTPGEFAWTVRGSVEQRACRILVIDS 371

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
                    + G +  S+P  + +LM Q + +L S +++S      IN  +  +G M
Sbjct: 372 ---------LNGYLA-SMP-QEKQLMLQ-MHELLSYLNQSGVTTFLINPQQGLVGSM 416


>gi|90407834|ref|ZP_01216011.1| DNA repair protein RadA [Psychromonas sp. CNPT3]
 gi|90311099|gb|EAS39207.1| DNA repair protein RadA [Psychromonas sp. CNPT3]
          Length = 472

 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 79/175 (45%), Gaps = 22/175 (12%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQG-----SI-FEGIEVVSSGSLGLDIA 58
           +E  +   S++L AA+S+ +     G    + SQG     S+  E    VS+G   LD  
Sbjct: 39  REAAVSSTSRSLNAAISRTKNTSYTG----INSQGVQRMDSVKIEQAARVSTGLSELDRV 94

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR----- 113
           LG GG   G +V I G   SGKTTL L  +AQ         +V AE +L     R     
Sbjct: 95  LG-GGITLGSVVLISGDPGSGKTTL-LTKVAQIMSQTMVTLYVTAEESLSQWAKRATERL 152

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
           KL  +  N L+S  D  E   +I +  + +  V  ++ DS+ A    + ++G  G
Sbjct: 153 KLNFNELNFLLSDTDCIE---DIVNQCLDNN-VRFLIADSIQAFESNS-VDGTAG 202


>gi|242399797|ref|YP_002995222.1| ATPase, RecA superfamily [Thermococcus sibiricus MM 739]
 gi|242266191|gb|ACS90873.1| ATPase, RecA superfamily [Thermococcus sibiricus MM 739]
          Length = 241

 Score = 39.3 bits (90), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           VS+G  GLD  +G GG   GR+  + GP  SGKTTL +  + +  K G    ++
Sbjct: 17  VSTGVKGLDNLIG-GGLIPGRVYVVTGPPGSGKTTLGIQFLVEGAKNGEKGIYI 69


>gi|218709036|ref|YP_002416657.1| hypothetical protein VS_1042 [Vibrio splendidus LGP32]
 gi|218322055|emb|CAV18112.1| hypothetical protein VS_1042 [Vibrio splendidus LGP32]
          Length = 235

 Score = 39.3 bits (90), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 8/119 (6%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           +Q  +QGS        S+G   LD  L  GGFP   ++E+   +  G+  L    +AQ Q
Sbjct: 18  LQSTAQGS------TTSTGYPQLDKQLD-GGFPTHGVIEVESQQGIGELRLLTPYLAQ-Q 69

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
            +     F++    + + +    G++L+N+L+ QP     AL   +  ++SGA   +++
Sbjct: 70  NSQKLAIFINPPGKICAEFFSSQGIELENILVIQPQRDLDALWAAEQCLKSGACHSVLL 128


>gi|154151027|ref|YP_001404645.1| circadian clock protein KaiC [Candidatus Methanoregula boonei 6A8]
 gi|153999579|gb|ABS56002.1| putative circadian clock protein, KaiC [Methanoregula boonei 6A8]
          Length = 573

 Score = 39.3 bits (90), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 39/82 (47%), Gaps = 4/82 (4%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-QKTGGTCAFVDA 103
           IE V SG  GLD   G GG PKGR   + G    GKT  A+  I +     G    FV  
Sbjct: 15  IEKVHSGIKGLDDITG-GGLPKGRPSLVSGGPGCGKTLFAMEFIIRGIIDYGEPGVFVAF 73

Query: 104 EHALDSIYA--RKLGVDLKNLL 123
           E  +D +    R +G DL NL+
Sbjct: 74  EEKIDDLKLNFRSMGFDLDNLI 95


>gi|188996195|ref|YP_001930446.1| DNA repair protein RadA [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931262|gb|ACD65892.1| DNA repair protein RadA [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 448

 Score = 39.3 bits (90), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 70/154 (45%), Gaps = 16/154 (10%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD ALG GGF  G++V + G    GK+TL L  I+          ++ AE +  
Sbjct: 71  STGFESLDNALG-GGFVDGQVVLVSGEPGVGKSTLLLQ-ISSYFANDKKVLYISAEESQY 128

Query: 109 SIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
            IY R  +L    +NL I      E  LE     + +   D+IV+DSV  +     +E  
Sbjct: 129 QIYIRAERLNALKENLYI----LSETNLEAILQAIENIKPDLIVLDSVQTVYSE-NLESP 183

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            G      Q + +S  +    + IS+SK I+  I
Sbjct: 184 AGSV---SQVKYVSSKI----TEISKSKSIISLI 210


>gi|302413964|ref|XP_003004814.1| DNA repair protein RAD51 [Verticillium albo-atrum VaMs.102]
 gi|261355883|gb|EEY18311.1| DNA repair protein RAD51 [Verticillium albo-atrum VaMs.102]
          Length = 355

 Score = 39.3 bits (90), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 29/211 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +S+GS  LD  L  GG   G I E++G   +GK+ +  HT+A + +         G C +
Sbjct: 109 ISTGSKQLDTLLA-GGIETGSITELFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 166

Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQP---DTGEQALEITDMLVRSGAVDII 149
           +D E     +     A + G+     L N+  ++    D   Q L+    ++      ++
Sbjct: 167 IDTEGTFRPVRLLAVANRFGLSGEEVLDNVAYARAYNSDHQLQLLQQASAMMCETRFSLL 226

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           ++DS  AL  R +  G  GE L   Q  L ++ LR L          +V  NQ+  ++  
Sbjct: 227 IVDSATALY-RTDFVG-RGE-LSSRQTHL-AKFLRTLQRLADEFGIAVVITNQVVAQVDG 282

Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
               MF   P+   GGN +   S+ R+ +++
Sbjct: 283 GPSAMFNPDPKKPIGGNIIAHASTTRISLKK 313


>gi|71997301|ref|NP_001023466.1| RADiation sensitivity abnormal/yeast RAD-related family member
           (rad-51) [Caenorhabditis elegans]
 gi|2913897|dbj|BAA24982.1| RecA/Rad51/Dmc1-like protein [Caenorhabditis elegans]
 gi|3786402|gb|AAD10194.1| RAD51 short isoform [Caenorhabditis elegans]
 gi|35210311|emb|CAE47473.1| C. elegans protein Y43C5A.6b, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 357

 Score = 39.3 bits (90), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 94/215 (43%), Gaps = 38/215 (17%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           + +GS  LD  LG GG   G I E+YG   +GKT L  H++A   +         G C +
Sbjct: 118 IRTGSASLDRLLG-GGIETGSITEVYGEYRTGKTQLC-HSLAVLCQLPIDMGGGEGKCMY 175

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------ 146
           +D             A++  +D    L+N+ +++    E    +  +++R+GA+      
Sbjct: 176 IDTNATFRPERIIAIAQRYNMDSAHVLENIAVARAYNSEH---LMALIIRAGAMMSESRY 232

Query: 147 DIIVIDSVAALTPRAEI--EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            ++++D   A   R E    GD+ E    + A L  + L KL      +   ++  NQ+ 
Sbjct: 233 AVVIVDCATA-HFRNEYTGRGDLAERQMKLSAFL--KCLAKLADEYGVA---VIITNQVV 286

Query: 205 MKI---GVMF-GSPETTTGGNALKFYSSVRLDIRR 235
            ++     MF    +   GG+ +   S+ RL +R+
Sbjct: 287 AQVDGGASMFQADAKKPIGGHIIAHMSTTRLYLRK 321


>gi|50978688|ref|NP_001003043.1| DNA repair protein RAD51 homolog 1 [Canis lupus familiaris]
 gi|75047603|sp|Q8MKI8|RAD51_CANFA RecName: Full=DNA repair protein RAD51 homolog 1; AltName:
           Full=cRad51
 gi|20387091|dbj|BAB91246.1| Rad51 [Canis lupus familiaris]
          Length = 339

 Score = 39.3 bits (90), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 92/221 (41%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G I E++G   +GKT +  HT+A + +         G   +
Sbjct: 102 ITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQIC-HTLAVTCQLPIDRGGGEGKAMY 159

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E                      LD++ YAR    D +  L+ Q            M
Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASA---------M 210

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           +V S    ++++DS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 211 MVES-RYALLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 263

Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++    MF + P+   GGN +   S+ RL +R+
Sbjct: 264 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 304


>gi|256811072|ref|YP_003128441.1| DNA repair and recombination protein RadA [Methanocaldococcus
           fervens AG86]
 gi|256794272|gb|ACV24941.1| DNA repair and recombination protein RadA [Methanocaldococcus
           fervens AG86]
          Length = 320

 Score = 39.3 bits (90), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 89/215 (41%), Gaps = 32/215 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA-------- 99
           +S+GS  LD  LG GG     + E  G   SGKT +A       Q      A        
Sbjct: 79  LSTGSKNLDEILG-GGLESQSVTEFAGMFGSGKTQIAHQACVNLQCPERIIADDAIKEEI 137

Query: 100 -------FVDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQAL---EITDMLV 141
                  ++D E           A  LG+D    L N+ +++    +  +   E  + L+
Sbjct: 138 LNEPKAVYIDTEGTFRPERIVQMAEALGLDGQEVLNNIFVARAYNSDMQMLYAENVENLI 197

Query: 142 RSGA-VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           R G  + ++++DS+ + T R E    +G      + + + + +  L        C+++  
Sbjct: 198 REGHNIKLVIVDSLTS-TFRTEY---VGRGKLAERQQKLGRHMATLNKLADLYNCVVIVT 253

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           NQ+  +   +FG+ E   GG+ +   ++ R+ +R+
Sbjct: 254 NQVAARPDAIFGASEQAIGGHIVGHAATFRIFLRK 288


>gi|20088973|ref|NP_615048.1| DNA repair and recombination protein RadB [Methanosarcina
           acetivorans C2A]
 gi|19913822|gb|AAM03528.1| DNA repair protein [Methanosarcina acetivorans C2A]
          Length = 267

 Score = 39.3 bits (90), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 8/124 (6%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           ++SSG   LD  LG GGF +G + +++G   +GKT + +    +  K G    F+D E  
Sbjct: 49  LLSSGCKPLDELLG-GGFERGIVTQVFGAAGTGKTNICIQLAVECVKQGQKVIFIDTEGL 107

Query: 107 LDSIYARKLGVDLK----NLLISQPDTGEQALEITDMLVRSGA--VDIIVIDSVAALTPR 160
               + +  G + K    +++I +P + E+       + R     V ++++DS  +   R
Sbjct: 108 SPVRFKQIAGENAKEIAGSIIIYEPLSFEEQYSAVREVERIAGENVGLVILDSATSYY-R 166

Query: 161 AEIE 164
            E+E
Sbjct: 167 FELE 170


>gi|296110028|ref|YP_003616977.1| DNA repair and recombination protein RadB [Methanocaldococcus
           infernus ME]
 gi|295434842|gb|ADG14013.1| DNA repair and recombination protein RadB [Methanocaldococcus
           infernus ME]
          Length = 207

 Score = 39.3 bits (90), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 90/208 (43%), Gaps = 29/208 (13%)

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD---LKNLLIS 125
           I +IYG    GKT + +  +    K G    +VD E  L     R++  D   ++NLLI 
Sbjct: 15  ITQIYGFPGVGKTNVCIMNVVNYAKEGKVI-YVDTEGGLFIERIRQITDDDKVIENLLIY 73

Query: 126 QPDTGEQALEITD-MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
              + ++  EI    L     + +IV+D++ +L  R E+  D  +++     +++ Q L+
Sbjct: 74  NVYSFKEQDEIIRGELPLLSNISLIVVDNIISLY-RLEVSSDAEKNMS--LNKMLGQQLK 130

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS--VRLDIRRVGSIKDK 242
            L       K  ++  NQ R  I          TGG  L+++S   VRL+          
Sbjct: 131 TLLKVAKIRKIPIIITNQARDTI-----EGFEATGGRILEYWSKCIVRLE---------- 175

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDI 270
                N  R+ +++    +P + V+F I
Sbjct: 176 ----KNSERLAILEKHPYAPQQWVKFKI 199


>gi|294146512|ref|YP_003559178.1| circadian clock protein KaiC [Sphingobium japonicum UT26S]
 gi|292676929|dbj|BAI98446.1| circadian clock protein KaiC [Sphingobium japonicum UT26S]
          Length = 496

 Score = 39.3 bits (90), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 15/122 (12%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA-FV-DA 103
           +V+ S S  LD  LG GG  +G  V + GP  +GK+ LAL  +  +   G   A FV D 
Sbjct: 248 DVLKSESTELDALLG-GGIERGSSVLVLGPAGTGKSLLALTFVTAAVARGEKAAIFVFDE 306

Query: 104 EHALDSIYARKLGVDLK------NLLISQPDT-----GEQALEITDMLVRSGAVDIIVID 152
           E  L    A  LG+D++      +L++ Q D      GE +  + + + R G V  +VID
Sbjct: 307 EMGLLFNRALGLGIDMRAMADSGDLIVEQVDAAELSPGEFSQRVRNCVERHG-VRTVVID 365

Query: 153 SV 154
           S+
Sbjct: 366 SL 367


>gi|166366654|ref|YP_001658927.1| circadian clock protein KaiC [Microcystis aeruginosa NIES-843]
 gi|166089027|dbj|BAG03735.1| circadian clock protein KaiC homolog [Microcystis aeruginosa
           NIES-843]
          Length = 506

 Score = 39.3 bits (90), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
           +Q +  E IE + +G  G D  L  GG PKGR   I G   S KT  A   +A+  K G 
Sbjct: 2   TQNNPLELIEKLETGIPGFDF-LSEGGLPKGRATLIAGTAGSAKTVFACQFLAEGIKNGE 60

Query: 97  TCAFVDAE 104
              FV  E
Sbjct: 61  NGVFVTFE 68


>gi|268552839|ref|XP_002634402.1| C. briggsae CBR-RAD-51 protein [Caenorhabditis briggsae]
          Length = 361

 Score = 39.3 bits (90), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 94/215 (43%), Gaps = 38/215 (17%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           + +GS  LD  LG GG   G I E+YG   +GKT L  H++A   +         G C +
Sbjct: 122 IRTGSAALDRLLG-GGIETGSITEVYGEYRTGKTQLC-HSLAVLCQLPIDMGGGEGKCMY 179

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------ 146
           +D             A++  +D    L+N+ +++    E  +    +++R+GA+      
Sbjct: 180 IDTNATFRPERIIAIAQRYNMDSAHVLENIAVARAYNSEHLMA---LIIRAGAMMSESRY 236

Query: 147 DIIVIDSVAALTPRAEI--EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            ++++D   A   R E    GD+ E    + A L  + L KL      +   ++  NQ+ 
Sbjct: 237 AVVIVDCATA-HFRNEYTGRGDLAERQMKLSAFL--KCLAKLADEYGVA---VIITNQVV 290

Query: 205 MKI---GVMF-GSPETTTGGNALKFYSSVRLDIRR 235
            ++     MF    +   GG+ +   S+ RL +R+
Sbjct: 291 AQVDGGASMFQADAKKPIGGHIIAHMSTTRLYLRK 325


>gi|207346868|gb|EDZ73231.1| YDR004Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 264

 Score = 39.3 bits (90), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 23/134 (17%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
           G E  ++  + +D  LG G F  G I EI+G  S+GK+ L +      Q +      GG 
Sbjct: 96  GPECFTTADVAMDELLGGGIFTHG-ITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGK 154

Query: 98  CAFVDAE-----HALDSIYA-----RKLGVDLKNLL-ISQPDTGEQA----LEITDMLVR 142
           C ++  E       L+S+ +      KLG+   N+  +S  D   Q     +++  +L R
Sbjct: 155 CVYITTEGDLPTQRLESMLSSRPAYEKLGITQSNIFTVSCNDLINQEHIINVQLPILLER 214

Query: 143 S-GAVDIIVIDSVA 155
           S G++ +++IDS++
Sbjct: 215 SKGSIKLVIIDSIS 228


>gi|164659209|ref|XP_001730729.1| hypothetical protein MGL_2183 [Malassezia globosa CBS 7966]
 gi|159104626|gb|EDP43515.1| hypothetical protein MGL_2183 [Malassezia globosa CBS 7966]
          Length = 309

 Score = 39.3 bits (90), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 65/132 (49%), Gaps = 26/132 (19%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD+ +G GG   G I E++G   +GK+ +  HT+A + +         G C 
Sbjct: 71  TITTGSPALDLVIG-GGMETGSITELFGEFRTGKSQIC-HTLAVTCQLPVDMGGGEGKCL 128

Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV----- 146
           ++D E     +     A + G+D    L N+  ++    +  LE   +LV++ A+     
Sbjct: 129 YIDTEGTFRPVRLLAVAERFGLDGEEVLDNVAYARAYNADHQLE---LLVQAAAMMSESR 185

Query: 147 -DIIVIDSVAAL 157
             ++++DS+ +L
Sbjct: 186 FALLIVDSLTSL 197


>gi|301098091|ref|XP_002898139.1| DNA repair protein RAD51 [Phytophthora infestans T30-4]
 gi|262105500|gb|EEY63552.1| DNA repair protein RAD51 [Phytophthora infestans T30-4]
          Length = 338

 Score = 39.3 bits (90), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 92/212 (43%), Gaps = 32/212 (15%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ----KTG--GTCAF 100
            +S+GS  +D  L  GG   G I E++G   +GKT L        Q    + G  G   +
Sbjct: 101 TLSTGSNAVDELLK-GGIETGSITEMFGEFRTGKTQLCHQLCVTCQLPVDRGGGEGKALY 159

Query: 101 VDAE-----HALDSIYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV----- 146
           +D E       L +I A + G+D    L N+  ++    E  ++   +L+++ A+     
Sbjct: 160 IDTEGTFRPQRLQAI-AERYGLDGDSVLDNVAFARAYNSEHQMQ---LLIQASAMMAESR 215

Query: 147 -DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
             ++++DS  AL  R +  G  GE L   Q  L ++ LR LT         +V  NQM  
Sbjct: 216 FALVIVDSATALF-RTDYSG-RGE-LAARQQEL-AKFLRALTRMADEFGVAVVITNQMTA 271

Query: 206 KI--GVMFGSPETTTGGNALKFYSSVRLDIRR 235
               G+    P    GGN +   S  RL +++
Sbjct: 272 NPDSGMFAKDPLQPIGGNIMAHASCTRLRLKK 303


>gi|119173930|ref|XP_001239326.1| hypothetical protein CIMG_08947 [Coccidioides immitis RS]
          Length = 366

 Score = 39.3 bits (90), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 94/212 (44%), Gaps = 29/212 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  L  GG   G I EI+G   +GK+ +  HT+A + +         G C 
Sbjct: 119 CITTGSRQLDTLLA-GGVETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCL 176

Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDI 148
           ++D E     +     A++ G+     L N+  ++    +  L++ +    ++      +
Sbjct: 177 YIDTEGTFRPVRLLAVAQRYGLAGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSL 236

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI- 207
           +V+DS  +L  R +  G  GE L   Q  L ++ +R L          +V  NQ+  ++ 
Sbjct: 237 LVVDSATSLY-RTDFSG-RGE-LSSRQTHL-ARFMRTLQRLADEFGVAVVITNQVVAQVE 292

Query: 208 ---GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
                MF   P+   GGN +   S+ RL +++
Sbjct: 293 GGPSAMFNPDPKKPIGGNIIAHASTTRLSLKK 324


>gi|55377059|ref|YP_134909.1| RecA/helicase-like [Haloarcula marismortui ATCC 43049]
 gi|55229784|gb|AAV45203.1| RecA/helicase-like [Haloarcula marismortui ATCC 43049]
          Length = 496

 Score = 39.3 bits (90), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +SSG  GLD +L  GG  +GR+  + GP  +GKT L    +    + G    F+ AE + 
Sbjct: 11  LSSGISGLD-SLLRGGLVEGRLYLVIGPPGTGKTLLGTQFLEAGLEAGDDVLFIHAEESA 69

Query: 108 DSIYAR--KLGVDLKN 121
             + A   +LG+D+ N
Sbjct: 70  SDLRANTAELGIDISN 85


>gi|49474083|ref|YP_032125.1| DNA repair protein RadA [Bartonella quintana str. Toulouse]
 gi|49239587|emb|CAF25944.1| DNA repair protein [Bartonella quintana str. Toulouse]
          Length = 464

 Score = 39.3 bits (90), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 66/158 (41%), Gaps = 12/158 (7%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           +G I+ L S     E    + SG   LD   G GGF +G  + + G    GK+TL   T 
Sbjct: 52  RGRIVALTSLSGNLEDAPRIHSGIAELDRVTG-GGFVRGSALLVGGDPGIGKSTLLTQTA 110

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE-ITDMLVRSGAVD 147
           A   + G    +V  E A+  I  R   +   N  +      E  +E I   L     +D
Sbjct: 111 AALSRKGHHVIYVSGEEAIAQICLRAQRLRTANTEVKL--AAETNVEDILATLSEHKNLD 168

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQAL 183
           +++IDS+  L        D  +S PG   Q R+  QA+
Sbjct: 169 MVIIDSIQTLW------SDAADSAPGTVTQVRISVQAM 200


>gi|303318132|ref|XP_003069067.1| DNA repair protein rhp51, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240108750|gb|EER26922.1| DNA repair protein rhp51, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|320037268|gb|EFW19206.1| DNA repair protein RAD51 [Coccidioides posadasii str. Silveira]
          Length = 348

 Score = 39.3 bits (90), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 94/212 (44%), Gaps = 29/212 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  L  GG   G I EI+G   +GK+ +  HT+A + +         G C 
Sbjct: 101 CITTGSRQLDTLLA-GGVETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCL 158

Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDI 148
           ++D E     +     A++ G+     L N+  ++    +  L++ +    ++      +
Sbjct: 159 YIDTEGTFRPVRLLAVAQRYGLAGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSL 218

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI- 207
           +V+DS  +L  R +  G  GE L   Q  L ++ +R L          +V  NQ+  ++ 
Sbjct: 219 LVVDSATSLY-RTDFSG-RGE-LSSRQTHL-ARFMRTLQRLADEFGVAVVITNQVVAQVE 274

Query: 208 ---GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
                MF   P+   GGN +   S+ RL +++
Sbjct: 275 GGPSAMFNPDPKKPIGGNIIAHASTTRLSLKK 306


>gi|326792548|ref|YP_004310369.1| hypothetical protein Clole_3487 [Clostridium lentocellum DSM 5427]
 gi|326543312|gb|ADZ85171.1| Protein of unknown function DUF2075 [Clostridium lentocellum DSM
           5427]
          Length = 645

 Score = 39.3 bits (90), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 40/213 (18%), Positives = 87/213 (40%), Gaps = 29/213 (13%)

Query: 3   YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
           Y+ E   +  SK+L+ AL  ++ + G    + + SQ  ++E    ++      D      
Sbjct: 210 YKIEHGKIRPSKSLQDAL--LKMLQGNQEFVMIDSQKVVYET--ALNQARFAFDTG---- 261

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
              K +++ + G   +GK+ LA++ + Q       C ++    A   +Y R+L  + K  
Sbjct: 262 ---KKQVIIVEGGPGTGKSVLAINLLVQLTNESMVCQYISKNSAPREVYKRRLQSNYKKS 318

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
            I     G  +   ++       +D++++D    L  ++ +  ++GE+            
Sbjct: 319 YIDNLFKGSGSYVDSN----KNELDVLIVDEAHRLNEKSGMFKNIGEN------------ 362

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
             +    I  +KC + FI++ +       GS E
Sbjct: 363 --QTKEIIHAAKCAIFFIDECQRVTASDVGSIE 393


>gi|309364289|emb|CAP25112.2| CBR-RAD-51 protein [Caenorhabditis briggsae AF16]
          Length = 357

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 94/215 (43%), Gaps = 38/215 (17%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           + +GS  LD  LG GG   G I E+YG   +GKT L  H++A   +         G C +
Sbjct: 118 IRTGSAALDRLLG-GGIETGSITEVYGEYRTGKTQLC-HSLAVLCQLPIDMGGGEGKCMY 175

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------ 146
           +D             A++  +D    L+N+ +++    E  +    +++R+GA+      
Sbjct: 176 IDTNATFRPERIIAIAQRYNMDSAHVLENIAVARAYNSEHLMA---LIIRAGAMMSESRY 232

Query: 147 DIIVIDSVAALTPRAEI--EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            ++++D   A   R E    GD+ E    + A L  + L KL      +   ++  NQ+ 
Sbjct: 233 AVVIVDCATA-HFRNEYTGRGDLAERQMKLSAFL--KCLAKLADEYGVA---VIITNQVV 286

Query: 205 MKI---GVMF-GSPETTTGGNALKFYSSVRLDIRR 235
            ++     MF    +   GG+ +   S+ RL +R+
Sbjct: 287 AQVDGGASMFQADAKKPIGGHIIAHMSTTRLYLRK 321


>gi|223995735|ref|XP_002287541.1| hypothetical protein THAPSDRAFT_261577 [Thalassiosira pseudonana
           CCMP1335]
 gi|220976657|gb|EED94984.1| hypothetical protein THAPSDRAFT_261577 [Thalassiosira pseudonana
           CCMP1335]
          Length = 285

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 21/110 (19%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GTCAFVDAEHA 106
           + +G   LD +L +GGFP   I E+ G    GKT LA      + K+G G   ++D E  
Sbjct: 54  IPTGLPTLDSSL-LGGFPLCSISELVGRAGVGKTHLAQQLCVLAAKSGFGGAVYIDTEKK 112

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
           L  +  R+L ++ +N +   P                  V ++VIDS+AA
Sbjct: 113 LSLVRLRELAME-RNTMQRLP------------------VKLVVIDSIAA 143


>gi|187922217|ref|YP_001893859.1| hypothetical protein Bphyt_0204 [Burkholderia phytofirmans PsJN]
 gi|187713411|gb|ACD14635.1| conserved hypothetical protein [Burkholderia phytofirmans PsJN]
          Length = 260

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 86/194 (44%), Gaps = 26/194 (13%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +++++L+AAL +       G  +  G+Q +   G   V +G   L   L  GG+P G +V
Sbjct: 16  ERARSLDAALDRNMYSESGGITLWRGAQLARVHG-RTVDTGYAALSAELPGGGWPLGALV 74

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL-ISQPDT 129
           E+   +  G   + L   A ++ +    A +   H  +S+    LGV ++ L+ +  P T
Sbjct: 75  ELLV-QQPGIGEMRLLKPALAELSARPIALLQPPHVPNSLAFAYLGVPVERLMRLRAPKT 133

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
            + AL   + ++++G+   +++                       Q  + ++ALR+L  +
Sbjct: 134 AD-ALWCAERVLQAGSCGALIL----------------------WQQHIRTEALRRLHLA 170

Query: 190 ISRSKCILVFINQM 203
              S+ +LV I  +
Sbjct: 171 AQTSETLLVLIRPL 184


>gi|14590864|ref|NP_142936.1| hypothetical protein PH1025 [Pyrococcus horikoshii OT3]
 gi|3257439|dbj|BAA30122.1| 236aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 236

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +S+G  GLD  L  GG   GR+  I GP  SGKTT  +  + +  + G   A++   H
Sbjct: 6   ERISTGVKGLD-ELIEGGLIPGRVYLITGPPGSGKTTFGMQFLLEGARRGEKVAYISLIH 64

Query: 106 ALDSI 110
             + +
Sbjct: 65  KPEEV 69


>gi|118587584|ref|ZP_01545008.1| DNA repair protein RadA [Oenococcus oeni ATCC BAA-1163]
 gi|290889823|ref|ZP_06552910.1| hypothetical protein AWRIB429_0300 [Oenococcus oeni AWRIB429]
 gi|118432035|gb|EAV38777.1| DNA repair protein RadA [Oenococcus oeni ATCC BAA-1163]
 gi|290480433|gb|EFD89070.1| hypothetical protein AWRIB429_0300 [Oenococcus oeni AWRIB429]
          Length = 470

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 23/152 (15%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113
           L+  LG GG   G ++ I G    GK+TL L    Q  + GG+  +V  E + + I  R 
Sbjct: 80  LNRVLG-GGIVPGSLILIGGDPGIGKSTLMLQVSGQLAENGGSVLYVSGEESDNQIKLRA 138

Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            +LGV   + ++  P+T    +E    +V+    D +VIDSV  +              P
Sbjct: 139 DRLGVGSDSFIV-YPETD---MEQIKSIVQQIEPDYLVIDSVQTMQE------------P 182

Query: 173 GMQARLMSQA-LRKLTS---SISRSKCILVFI 200
            +Q+ + S A +R++T+    I+++  I VFI
Sbjct: 183 DLQSPIGSVAQIREVTADLMQIAKTNAITVFI 214


>gi|63852088|dbj|BAD98461.1| RecA homolog Rad51 [Oreochromis niloticus]
          Length = 336

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 90/219 (41%), Gaps = 47/219 (21%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +S+GS  LD  L  GG   G I E++G   +GKT L  HT+A + +         G   +
Sbjct: 99  ISTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQLC-HTLAVTCQLPIDQGGGEGKAMY 156

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E                      LD++ YAR    D +  L+ Q            M
Sbjct: 157 IDTEGTFRPERLLAVAERYGLVGSDVLDNVAYARAFNTDHQTQLLYQASA---------M 207

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           +  S    ++++DS  AL  R +  G  GE L   Q  L  + LR L          +V 
Sbjct: 208 MAES-RYALLIVDSATALY-RTDYSG-RGE-LSARQGHL-GRFLRMLLRLADEFGVAVVI 262

Query: 200 INQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
            NQ+  ++    MF + P+   GGN L   S+ RL +R+
Sbjct: 263 TNQVVAQVDGAAMFSADPKKPIGGNILAHASTTRLYLRK 301


>gi|326919838|ref|XP_003206184.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Meleagris
           gallopavo]
          Length = 339

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 91/221 (41%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G I E++G   +GKT L  HT+A + +         G   +
Sbjct: 102 ITTGSKELDKLLQ-GGIETGSITELFGEFRTGKTQLC-HTLAVTCQLPIDRGGGEGKAMY 159

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E                      LD++ YAR    D +  L+ Q            M
Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASA---------M 210

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           +  S    ++++DS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 211 MAES-RYALLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 263

Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++    MF + P+   GGN +   S+ RL +R+
Sbjct: 264 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 304


>gi|255075467|ref|XP_002501408.1| Rad51 DNA recombinase 1 [Micromonas sp. RCC299]
 gi|226516672|gb|ACO62666.1| Rad51 DNA recombinase 1 [Micromonas sp. RCC299]
          Length = 344

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 73/161 (45%), Gaps = 28/161 (17%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCA 99
           +V++G+  LD  LG GGF  G + EIYG   +GKT L  HT+A + +         G   
Sbjct: 105 MVTTGASKLDELLG-GGFESGSLTEIYGEFRTGKTQLC-HTLAVTCQLPLDQGGAEGKAM 162

Query: 100 FVDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEI---TDMLVRSGAVDI 148
           ++D E           A + G+D    L N+  ++    E   E+      ++      +
Sbjct: 163 YIDTEGTFRPQRLIAIAERFGMDPNAVLDNVAYAKAHNTEHQSELLVAAAGMMAEARFGV 222

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMS--QALRKLT 187
           I++DSV  L  R E EG  GE    + AR M   + LR LT
Sbjct: 223 IIVDSVTNLF-RTEYEGR-GE----LSARQMHLGKFLRHLT 257


>gi|78045081|ref|YP_359689.1| DNA repair protein RadA [Carboxydothermus hydrogenoformans Z-2901]
 gi|77997196|gb|ABB16095.1| DNA repair protein RadA domain protein [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 547

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 17/114 (14%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY------ARKL 115
           G  P+G +V + G    GK+ LAL+ +A     GG    + AE A+ ++Y       R+L
Sbjct: 181 GILPEGGLVLLAGKPKVGKSWLALN-MACGLSNGGAVCGIPAEKAVKTLYLALEDTTRRL 239

Query: 116 GVDLK--------NLLIS--QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
              ++        N LIS   P   E+ L + +  ++   + +++ID++A + P
Sbjct: 240 KTRIQQAGLTPNENSLISTTWPKLNEKGLTLLEETIKQAGIQVVIIDTLAKVKP 293


>gi|298248415|ref|ZP_06972220.1| KaiA binding protein [Ktedonobacter racemifer DSM 44963]
 gi|297551074|gb|EFH84940.1| KaiA binding protein [Ktedonobacter racemifer DSM 44963]
          Length = 529

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +G   LD+ LG GG PKG +  I GP  SGKTTLA      + + G    F+ A
Sbjct: 23  PTGIPHLDLVLG-GGLPKGALTVILGPPGSGKTTLASQIAFAAAQRGEKVLFLTA 76


>gi|253702679|ref|YP_003023868.1| DNA repair protein RadA [Geobacter sp. M21]
 gi|251777529|gb|ACT20110.1| DNA repair protein RadA [Geobacter sp. M21]
          Length = 452

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 8/111 (7%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSGS   D  LG GGF  G ++ I G   +GK+T+ L T+  +  +     +V  E +L 
Sbjct: 73  SSGSGEFDRVLG-GGFVPGSVILIGGDPGAGKSTILLQTMCHAAAS-KEVLYVSGEESLQ 130

Query: 109 SIY--ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            I   AR+L + L  + +    + EQ LE      ++   +++VIDS+  +
Sbjct: 131 QIAGRARRLQLPLDRVKMLAESSVEQVLEAA----KAERPEVVVIDSIQVM 177


>gi|284162464|ref|YP_003401087.1| circadian clock protein, KaiC [Archaeoglobus profundus DSM 5631]
 gi|284012461|gb|ADB58414.1| putative circadian clock protein, KaiC [Archaeoglobus profundus DSM
           5631]
          Length = 444

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E V++G   LD+ L  GGF KG I  I G   +GKTT  LH +  +   G    FV  E 
Sbjct: 228 ERVTTGIAKLDV-LTDGGFYKGSITVIAGQTGTGKTTFGLHFVYTNALRGHRAVFVTLEE 286

Query: 106 ALDSI 110
           ++  I
Sbjct: 287 SVGDI 291



 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 9/106 (8%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV---- 117
           GGFP+G ++ I G   +GKTTL         K G    FV      +  +    G     
Sbjct: 14  GGFPRGSMILIAGEPGTGKTTLVSAIAINEIKKGKKVLFVSLNEPKEDYFGTIEGFGWEI 73

Query: 118 -DLKNLLISQPDTGEQALEITDMLVRSGAV----DIIVIDSVAALT 158
            + K   +     G +ALE    L+         D+IVIDS+ ALT
Sbjct: 74  DESKFKFVDLFTVGREALEAQLKLITEEIFNFKPDLIVIDSITALT 119


>gi|71028890|ref|XP_764088.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68351042|gb|EAN31805.1| hypothetical protein, conserved [Theileria parva]
          Length = 286

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 59/146 (40%), Gaps = 30/146 (20%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLAL--------HTIAQSQ-------KTGGTCA 99
           +D AL  GG   G++ EIYGP  SGKT  AL        + +  S+        T GT  
Sbjct: 35  IDQALN-GGLLLGKVCEIYGPSGSGKTQFALSLTSEVLINNLIHSKDYVVLYIYTNGTFP 93

Query: 100 FVDAEHALDSIYARKLGVD-----------LKNLLISQ-PDTGEQALEITDML--VRSGA 145
                  L S Y    G+            LKNL + +  D  E     T  L  +    
Sbjct: 94  IERLNEILRSKYEDAKGLIKADENFNTSQLLKNLYVEKVTDNDELYFTFTSKLEEMLQHN 153

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESL 171
           V +IVIDS+AAL    + E   G+ +
Sbjct: 154 VKLIVIDSIAALFRTVQNESYHGQRI 179


>gi|224050703|ref|XP_002196004.1| PREDICTED: RAD51 homolog (RecA homolog, E. coli) [Taeniopygia
           guttata]
          Length = 339

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 91/221 (41%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G I E++G   +GKT L  HT+A + +         G   +
Sbjct: 102 ITTGSKELDKLLQ-GGIETGSITELFGEFRTGKTQLC-HTLAVTCQLPIDRGGGEGKAMY 159

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E                      LD++ YAR    D +  L+ Q            M
Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASA---------M 210

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           +  S    ++++DS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 211 MAES-RYALLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 263

Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++    MF + P+   GGN +   S+ RL +R+
Sbjct: 264 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 304


>gi|218186424|gb|EEC68851.1| hypothetical protein OsI_37443 [Oryza sativa Indica Group]
          Length = 396

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 26/208 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  LD  LG GG     I E +G   SGKT LA HT+  S +         G  A+
Sbjct: 108 ITTGSQALDKLLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSTQLPIHMHGGNGKVAY 165

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149
           +D E           A + G+D    L N++ ++  T E    +   L    A +   ++
Sbjct: 166 IDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLL 225

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           ++DSV AL  R +  G  GE L   Q +L +Q L +LT         +   NQ+      
Sbjct: 226 IVDSVIALF-RVDFSGR-GE-LAERQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
           G+     +   GG+ L   +++RL +R+
Sbjct: 282 GMFITDLKKPAGGHVLAHAATIRLMLRK 309


>gi|237756460|ref|ZP_04584996.1| DNA repair protein RadA [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691374|gb|EEP60446.1| DNA repair protein RadA [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 285

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 70/154 (45%), Gaps = 16/154 (10%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD ALG GGF  G++V + G    GK+TL L  I+          ++ AE +  
Sbjct: 71  STGFESLDNALG-GGFVDGQVVLVSGEPGVGKSTLLLQ-ISSYFANDKKVLYISAEESQY 128

Query: 109 SIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
            IY R  +L    +NL I      E  LE     + +   D+IV+DSV  +     +E  
Sbjct: 129 QIYIRAERLNALKENLYI----LSETNLEAILQAIENIKPDLIVLDSVQTVYSE-NLESP 183

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            G      Q + +S  +    + IS+SK I+  I
Sbjct: 184 AGSV---SQVKYVSSKI----TEISKSKSIISLI 210


>gi|45384012|ref|NP_990504.1| DNA repair protein RAD51 homolog 1 [Gallus gallus]
 gi|585770|sp|P37383|RAD51_CHICK RecName: Full=DNA repair protein RAD51 homolog 1
 gi|299819|gb|AAB26354.1| homolog to S.cerevisiae [Gallus gallus]
          Length = 339

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 91/221 (41%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G I E++G   +GKT L  HT+A + +         G   +
Sbjct: 102 ITTGSKELDKLLQ-GGIETGSITELFGEFRTGKTQLC-HTLAVTCQLPIDRGGGEGKAMY 159

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E                      LD++ YAR    D +  L+ Q            M
Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASA---------M 210

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           +  S    ++++DS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 211 MAES-RYALLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 263

Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++    MF + P+   GGN +   S+ RL +R+
Sbjct: 264 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 304


>gi|332159189|ref|YP_004424468.1| recombinase related protein [Pyrococcus sp. NA2]
 gi|331034652|gb|AEC52464.1| recombinase related protein [Pyrococcus sp. NA2]
          Length = 236

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +S+G  GLD  L  GG   GR+  + GP  SGKTT  +  + +  + G   A+V   H
Sbjct: 6   ERISTGVKGLD-ELIEGGLIPGRVYLVTGPPGSGKTTFGMQFLLEGARRGEKVAYVSLIH 64


>gi|154279522|ref|XP_001540574.1| meiotic recombination protein dmc1 [Ajellomyces capsulatus NAm1]
 gi|150412517|gb|EDN07904.1| meiotic recombination protein dmc1 [Ajellomyces capsulatus NAm1]
          Length = 358

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 23/140 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IA 89
           M+LG Q    + +  +S+GS   D  L  GGF    I E+YG    GKT L+ HT   +A
Sbjct: 86  MELGHQR---KRVVKISTGSKQFDSILA-GGFQSMSISEVYGEFRCGKTQLS-HTMSVMA 140

Query: 90  QSQK----TGGTCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEIT 137
           Q  K      G  A++D E        +  A + GVD    L+N+  ++    E  LE+ 
Sbjct: 141 QLPKDMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELL 200

Query: 138 DMLVRS---GAVDIIVIDSV 154
           + L +    G   +++IDS+
Sbjct: 201 NTLSKEFVGGEYRLLIIDSI 220


>gi|115461801|ref|NP_001054500.1| Os05g0121700 [Oryza sativa Japonica Group]
 gi|54287477|gb|AAV31221.1| putative DNA repair protein RAD51 [Oryza sativa Japonica Group]
 gi|113578051|dbj|BAF16414.1| Os05g0121700 [Oryza sativa Japonica Group]
 gi|215741250|dbj|BAG97745.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215741600|dbj|BAG98095.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218195995|gb|EEC78422.1| hypothetical protein OsI_18249 [Oryza sativa Indica Group]
 gi|222630019|gb|EEE62151.1| hypothetical protein OsJ_16938 [Oryza sativa Japonica Group]
          Length = 363

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 32/176 (18%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALH-----TIAQSQ-KTGGTCAFVDAEHAL 107
           GLD AL  GG P G++ E+ GP   GKT   L      T+ +      G   ++D E   
Sbjct: 88  GLDEALH-GGIPAGKLTEVVGPSGIGKTQFCLKLALLATLPECYGGLNGRVLYIDTESKF 146

Query: 108 DS-------------IYARKLGVDLK---NLLISQPDTGEQ---ALEITDMLVRSGAVDI 148
            S             I+ R+ G+  K    +L+ +P +  +   +LE   + +    V +
Sbjct: 147 SSRRMIEIGEKSFPQIF-RQEGLAQKMAGRILVLRPTSLSEFTKSLEQMKVTLLQHDVKL 205

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           +V+DS+AAL   +EIE    +S  G++   +  AL  L S    S+  +V  NQ+R
Sbjct: 206 LVVDSMAALM-SSEIE----KSATGLRQHPLRWALSFLKSIAEFSQIPVVVTNQVR 256


>gi|167760711|ref|ZP_02432838.1| hypothetical protein CLOSCI_03096 [Clostridium scindens ATCC 35704]
 gi|167661598|gb|EDS05728.1| hypothetical protein CLOSCI_03096 [Clostridium scindens ATCC 35704]
          Length = 336

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 97/241 (40%), Gaps = 39/241 (16%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQK-------------TGGTCA-------FVDA 103
            P G++  + G    GKTT+ L  IA+  K              G T A       +  A
Sbjct: 35  IPFGKVTIVQGDPGEGKTTMVLQIIAKLTKGESVLSGSDEPILEGKTMALDPVNVIYQTA 94

Query: 104 EHAL-DSIYARKL--GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           E  L D+I  R L  G D   +++   D  +QAL + D+ +        +I + A L   
Sbjct: 95  EDGLGDTIKPRLLAAGADCSRVMVI--DDNDQALTMMDVRLEEA-----IIQTKARLVVL 147

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
             I+G +G  +   +A  +   ++++     +  C ++ I  M            +  G 
Sbjct: 148 DPIQGFLGADVDMHRANEIRPLMKRVAILAEKYHCAIILIGHMNKN----SNGKSSYRGL 203

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
            ++ F ++ R  +  VG IKD+  I      V  VK+ +A   K + F +   +G  + G
Sbjct: 204 GSIDFQAAAR-SVLIVGRIKDEPEI----RVVCHVKSSLAPEGKSIAFRLDKDKGFEWIG 258

Query: 281 E 281
           E
Sbjct: 259 E 259


>gi|322698012|gb|EFY89786.1| DNA repair protein RAD51 [Metarhizium acridum CQMa 102]
          Length = 348

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 104/244 (42%), Gaps = 35/244 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G + E++G   +GK+ +  HT+A + +         G C +
Sbjct: 103 ITTGSKNLDTLLA-GGIETGSVTELFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 160

Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDII 149
           +D E     +     A + G+     L N+  ++    +  L++ +    ++      ++
Sbjct: 161 IDTEGTFRPVRLLAVANRFGLSGEEVLDNVAYARAYNSDHQLQLLNQAAAMMCETRFSLL 220

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           V+DS  +L  R +  G  GE L   Q  L ++ +R L          +V  NQ+  ++  
Sbjct: 221 VVDSATSLY-RTDFCG-RGE-LSNRQTHL-AKFMRTLQRLADEFGIAVVITNQVVAQVDG 276

Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               MF   P+   GGN +   S+ R+ ++      R+  I D   +  + T   + ++ 
Sbjct: 277 GPSAMFNPDPKKPIGGNIIAHASTTRISLKKGRGETRIAKIYDSPCLPESDTLFAINEDG 336

Query: 259 MASP 262
           +  P
Sbjct: 337 IGDP 340


>gi|159905833|ref|YP_001549495.1| DNA repair and recombination protein RadA [Methanococcus
           maripaludis C6]
 gi|226736608|sp|A9AA90|RADA_METM6 RecName: Full=DNA repair and recombination protein radA
 gi|159887326|gb|ABX02263.1| DNA repair and recombination protein RadA [Methanococcus
           maripaludis C6]
          Length = 322

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 84/216 (38%), Gaps = 33/216 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA-------- 99
           +S+GS  LD  L  GG     + E  G   SGKT +   +    Q  G   A        
Sbjct: 80  LSTGSKELDTVLA-GGLESQSVTEFAGMYGSGKTQIMHQSCVNLQIAGKIYADLEGVVEE 138

Query: 100 --------FVDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQAL----EITDM 139
                   ++D E           A  LG+D    L N  +++    +  +    +I D+
Sbjct: 139 ELENPKAVYIDTEGTFRPERVVQMAEGLGIDGQLVLDNTFVARAYNSDMQMLFAEKIEDL 198

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           +     + +++IDS+ + T R E  G     L   Q +L  + +  L        CI++ 
Sbjct: 199 IKSGNNIKLVIIDSLTS-TFRNEFTGR--GKLAERQQKL-GRHMATLNKLADLYNCIVLV 254

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
            NQ+  K    FG  E   GG+ +   ++ R  +R+
Sbjct: 255 TNQVAAKPDAFFGVAEQAIGGHVVGHAATFRFFLRK 290


>gi|288947751|ref|YP_003445134.1| AAA ATPase [Allochromatium vinosum DSM 180]
 gi|288898267|gb|ADC64102.1| AAA ATPase [Allochromatium vinosum DSM 180]
          Length = 328

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           + GP  SGKT  AL  IAQ    GG  A +D E     +YA     D+  L  + P T  
Sbjct: 16  LCGPSGSGKTYSAL-LIAQGLAPGGKIALIDTERGSGELYADLTAYDVAPL--NPPYTPT 72

Query: 132 QALEITDMLVRSGAVDIIVIDSVA 155
           + +EI      S   D+++IDS++
Sbjct: 73  RYIEIIKA-AESAGYDVLIIDSLS 95


>gi|27377288|ref|NP_768817.1| hypothetical protein blr2177 [Bradyrhizobium japonicum USDA 110]
 gi|27350431|dbj|BAC47442.1| blr2177 [Bradyrhizobium japonicum USDA 110]
          Length = 506

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 14/131 (10%)

Query: 41  IFEGIEV--VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
           + +G E+  +S+G+ GLD  LG GGF   R+    G   SGKTTLAL  + +  + G   
Sbjct: 7   LLDGCELPRISTGNFGLDDILG-GGFDPERMHLFEGQPGSGKTTLALEFLLEGVRVGEPT 65

Query: 99  AFV---DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI------- 148
            ++   + E  L  + A++ G  L  + I +    E  L+ +  L      ++       
Sbjct: 66  LYITLSETEQEL-RLVAKRHGWSLNGITIFELIPPETTLDPSQELTVLHPAEMELSETTQ 124

Query: 149 IVIDSVAALTP 159
           ++ D V AL P
Sbjct: 125 MIFDRVEALAP 135


>gi|238878354|gb|EEQ41992.1| meiotic recombination protein DMC1 [Candida albicans WO-1]
          Length = 353

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 99/211 (46%), Gaps = 30/211 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS   +  LG GG     I E++G    GKT L  HT+  + +         G  A+
Sbjct: 116 ITTGSKQFNEILG-GGIQSMSITEVFGEFRCGKTQLC-HTLCVAAQLPTDMGGGEGRVAY 173

Query: 101 VDAEHAL--DSI--YARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVDII 149
           +D E     D I   A + GVD    L+N+  ++    E  +E+ + L   +  G   ++
Sbjct: 174 IDTEGTFRPDRIRSIAERYGVDADTCLENISYARALNSEHQIELVEQLGNELAEGTFRLL 233

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMKIG 208
           ++DS+ A   R +  G  GE L   Q +L +Q L  LT  ++    I VF+ NQ++   G
Sbjct: 234 IVDSIMACF-RVDYSG-RGE-LNERQQKL-NQHLSNLT-RVAEDYNIAVFLTNQVQSDPG 288

Query: 209 --VMFGSPE--TTTGGNALKFYSSVRLDIRR 235
              +F + +     GG+ L   S+ R+ +R+
Sbjct: 289 ASALFAAADGRKPVGGHVLAHASATRILLRK 319


>gi|239947678|ref|ZP_04699431.1| DNA repair protein RadA [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921954|gb|EER21978.1| DNA repair protein RadA [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 487

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 6/102 (5%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG   G  + I G    GK+TL L   A +  +   C ++  E +LD I  R + ++L N
Sbjct: 119 GGLVLGSAILIGGDPGIGKSTLLLQLAASNFASKINCLYITGEESLDQIKLRAIRLNLTN 178

Query: 122 LLISQPDT-GEQALE--ITDMLVRSGAVDIIVIDSVAALTPR 160
                 DT     LE  I  +      +D++VIDS+  +T +
Sbjct: 179 Y---NTDTLAATNLEDIIASIEANKNNIDLVVIDSIQTITTK 217


>gi|238814375|ref|NP_001154949.1| RecA homolog RAD51 [Nasonia vitripennis]
          Length = 340

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 95/218 (43%), Gaps = 38/218 (17%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK----TGGT--- 97
           I  +++GS  LD  LG GG   G I EI+G   +GK+ L  HT+A + +     GG    
Sbjct: 99  IVYITTGSAELDRLLG-GGIETGSITEIFGEFRTGKSQLC-HTLAVNCQLPVDMGGAEAK 156

Query: 98  CAFVDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV--- 146
           C ++D E           A +  ++    L N+  ++    +     T +L+++ A+   
Sbjct: 157 CIYIDTEGTFRPERLIAVAERYNINGDSVLDNVATARAYNSDHQ---TQLLIKASAMMSE 213

Query: 147 ---DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK--CILVFIN 201
               ++++DS  AL  R +  G  GE    + AR M  A           +  C +V  N
Sbjct: 214 SRYGLLIVDSATALY-RTDFAG-RGE----LAARQMHLARFLRLLLRLADEFGCAVVITN 267

Query: 202 QMRMKI---GVMFGSPETTT-GGNALKFYSSVRLDIRR 235
           Q+   +     MFG  +    GGN +   S+ RL +R+
Sbjct: 268 QVVASVDGAASMFGGDQKKPIGGNIIAHASTTRLYLRK 305


>gi|329890150|ref|ZP_08268493.1| DNA repair protein RadA [Brevundimonas diminuta ATCC 11568]
 gi|328845451|gb|EGF95015.1| DNA repair protein RadA [Brevundimonas diminuta ATCC 11568]
          Length = 457

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 10/100 (10%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR--KLGVDL 119
           GG   G  + + G    GK+TL L   A++ + G   A++  E A++ I AR  ++GV  
Sbjct: 84  GGVVPGSAILLGGDPGVGKSTLLLEVTAKAARNGAKVAYISGEEAIEQIRARAKRMGVAD 143

Query: 120 KNLLISQPDTGEQALEITDML--VRSGAVDIIVIDSVAAL 157
            ++ ++       A  + D+L  ++    DI++IDS+  L
Sbjct: 144 ADVSLA------SATALRDILTTLKRDPFDIVIIDSIQTL 177


>gi|154151638|ref|YP_001405256.1| DNA repair and recombination protein RadA [Candidatus Methanoregula
           boonei 6A8]
 gi|154000190|gb|ABS56613.1| DNA repair and recombination protein RadA [Methanoregula boonei
           6A8]
          Length = 325

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 88/208 (42%), Gaps = 33/208 (15%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-------QSQKTGGTCAFVDAEHAL 107
           LD  +G GG     I E+YG   SGK+ + +H +A       +     G+  ++D E+  
Sbjct: 91  LDALMG-GGLETQAITEMYGEFGSGKSQV-VHQMAVNVQLPEEQGGMNGSVIYIDTENTF 148

Query: 108 DSIYARK----LGVD--------LKNLLISQPDTGEQALEI--------TDMLVRSGAVD 147
                 +    LG+D        L N+ I++  T +  + +         ++      V 
Sbjct: 149 RPERIEQMVAGLGIDDIPDTQEFLDNIHIARAHTSDHQMLLVENSRDLANELKGSEKPVK 208

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           + +IDS+ A   R+E  G    +L   Q +L ++ + +L   I     + +  NQ+    
Sbjct: 209 LFIIDSLTAHF-RSEYAGRG--TLAARQQKL-NRHMHELFKLIDEHNAVGLVTNQVMSNP 264

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
            V FG P    GGN +   ++ R+ +R+
Sbjct: 265 AVFFGDPTKPIGGNIVGHTATFRIYLRK 292


>gi|330506380|ref|YP_004382808.1| DNA repair and recombination protein RadB [Methanosaeta concilii
           GP-6]
 gi|328927188|gb|AEB66990.1| DNA repair and recombination protein RadB [Methanosaeta concilii
           GP-6]
          Length = 223

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +  G   LD+ LG GGF  G I E+YG   SGK+ + L     +   G    F+D E
Sbjct: 4   LERLPVGCQSLDLLLG-GGFESGIITELYGESGSGKSNIVLQLAVAAVARGFRVIFIDTE 62

Query: 105 HALDSIYARKLG---VDL-KNLLISQPDTGE-QALEITDMLVRSGA-VDIIVIDSVAALT 158
                 + +  G    D+   ++I +P + E QA+ I +    +G  + ++++DS  +L 
Sbjct: 63  GFSAERFKQIAGPGAADIAAKIMIFEPMSLEQQAMAIREASKIAGRDLGLVILDSATSLY 122

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
            R  +E +  +S P  +A  ++  L +L     R +  +V  NQ+
Sbjct: 123 -RMLLEAE--DSRPARRA--LTVQLSELQEIARRHRIPVVITNQV 162


>gi|237833229|ref|XP_002365912.1| DNA repair protein, putative [Toxoplasma gondii ME49]
 gi|211963576|gb|EEA98771.1| DNA repair protein, putative [Toxoplasma gondii ME49]
 gi|221488373|gb|EEE26587.1| DNA repair protein, putative [Toxoplasma gondii GT1]
 gi|221508875|gb|EEE34444.1| DNA repair protein, putative [Toxoplasma gondii VEG]
          Length = 354

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 103/225 (45%), Gaps = 34/225 (15%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-----QKTG--GTCAFV 101
           ++GS+ LD +L  GG   G + E++G   +GKT L  HT+A +     ++ G  G C ++
Sbjct: 116 TTGSVQLD-SLLKGGIETGNLTELFGEFRTGKTQLC-HTLAVTCQLPIEQAGGEGKCLWI 173

Query: 102 DAEHALD-----SIYARKLGVD----LKNLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           D E         SI A++ G++    L N+  ++    +  +E+      ++      ++
Sbjct: 174 DTEGTFRPERIVSI-AKRFGLNANDCLDNVAYARAYNCDHQMELLMEASAMMAESRFALL 232

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMS--QALRKLTSSISRSKCILVFINQMRMKI 207
           ++DS  AL  R+E  G  GE L   Q  L    + L+++  +   +  +   +      +
Sbjct: 233 IVDSATALY-RSEYTGR-GE-LASRQTHLCRFLRCLQRIADTYGVAVVVSNQVVAKVDNM 289

Query: 208 GVMF-GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
           G MF G+ +   GGN +   S  RL +R      R+  I D  S+
Sbjct: 290 GGMFSGNEKLPIGGNIMAHASQTRLYLRKGRGESRICKIYDSPSL 334


>gi|2500103|sp|P70099|RAD51_CRIGR RecName: Full=DNA repair protein RAD51 homolog 1
 gi|1552258|emb|CAA69384.1| rad51 [Cricetulus griseus]
          Length = 339

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 91/221 (41%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G I E++G   +GKT +  HT+A + +         G   +
Sbjct: 102 ITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQIC-HTLAVTCQLPIDRGGGEGKAMY 159

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E                      LD++ YAR    D +  L+ Q            M
Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASA---------M 210

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           +V S    ++++DS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 211 MVES-RYALLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 263

Query: 198 VFINQMRMKI--GVMF-GSPETTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++    MF   P+   GGN +   S+ RL +R+
Sbjct: 264 VITNQVVAQVDGAAMFTADPKKPIGGNIIAHASTTRLYLRK 304


>gi|66822135|ref|XP_644422.1| hypothetical protein DDB_G0273611 [Dictyostelium discoideum AX4]
 gi|66822947|ref|XP_644828.1| hypothetical protein DDB_G0273139 [Dictyostelium discoideum AX4]
 gi|60472545|gb|EAL70496.1| hypothetical protein DDB_G0273611 [Dictyostelium discoideum AX4]
 gi|60472838|gb|EAL70787.1| hypothetical protein DDB_G0273139 [Dictyostelium discoideum AX4]
          Length = 351

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 106/266 (39%), Gaps = 59/266 (22%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS   D  L  GG   G I EI+G   +GKT +  HT+  + + G       G   +
Sbjct: 112 ITTGSKEFDSLLD-GGIESGSITEIFGEFRTGKTQIC-HTLCVTCQLGYSQGGGEGRALY 169

Query: 101 VDA--------------------EHALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D                     EH LD++ YAR    D +  L+ Q             
Sbjct: 170 IDTEGTFRPERLLAIAERYNLNGEHVLDNVSYARAYNSDHQLELLVQASA---------- 219

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           ++      ++++DS  AL  R +  G  GE L   Q  L ++ LR L          +V 
Sbjct: 220 MMSESRYALLIVDSATALY-RTDYAG-RGE-LADRQKHL-ARFLRTLQRLADEFGVAVVI 275

Query: 200 INQMRMKI---GVMFGS-PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
            NQ+   +   G MF   P+   GG+ +   S+ RL +R+             + R+  +
Sbjct: 276 TNQVVASVDGAGGMFNPDPKKPIGGHIMAHSSTTRLSLRK----------GKGEMRICKI 325

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGE 281
            +  + P  +  F I Y +GIS + E
Sbjct: 326 YDSPSLPESEKPFGI-YSDGISDYKE 350


>gi|316973460|gb|EFV57045.1| DNA repair protein RAD51 [Trichinella spiralis]
          Length = 272

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 9/98 (9%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQKTGGTCA 99
           +++ I   S+G   +D  L  GG     + E+ GP  SGKT   L  +A   ++TGG   
Sbjct: 30  MYQNICAFSTGYEAIDRMLK-GGIYSSELTELVGPVGSGKTQFCLTFVANLVKQTGGHVL 88

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           F+D             GV L  +L+S+  + E  L ++
Sbjct: 89  FIDTTGGFS-------GVRLAEILLSRTSSSEIQLHVS 119


>gi|312621869|ref|YP_004023482.1| DnaB domain-containing protein helicase domain-containing protein
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202336|gb|ADQ45663.1| DnaB domain protein helicase domain protein [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 605

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 8/111 (7%)

Query: 22  QIQRVYGKGAIMQLGSQGSIF---EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           Q++  +   A++   +Q   F   +  + +S+G   LD  L  GGF  G +       S 
Sbjct: 307 QLKAAFYPYALINFAAQYVDFLKSDKFKAISTGFKQLDDVLN-GGFVAGNLYVFGAKPSV 365

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDA----EHALDSIYARKLGVDLKNLLIS 125
           GKTT  L  I    + G  C F+ A    E  L  I+ R+ G+   N+ ++
Sbjct: 366 GKTTFLLQLIDNFLQQGYECVFLSAEMPKEEILTRIFCREYGLKKVNVKVA 416


>gi|145349400|ref|XP_001419122.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579353|gb|ABO97415.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 343

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 93/220 (42%), Gaps = 49/220 (22%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  +D  L  GG   G + EIYG   +GKT L +HT+A + +         G C +
Sbjct: 106 ITTGSAKVDELLQ-GGIESGSVTEIYGEFRTGKTQL-MHTLAVTSQMPIEHGGGEGKCLY 163

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV-----D 147
           +D E           A +  +D    L N+  ++    E   E+  +L  +G +      
Sbjct: 164 IDTEGTFRPQRLIQIAERFNMDPSAVLDNVAYAKAHNVEHQSEL--LLAAAGMMAETRFS 221

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMS--QALRKLTSSISRSKCILVFINQMRM 205
           +++IDSV  L  R E EG  GE    + AR M   + LR+L          ++  NQ   
Sbjct: 222 LMIIDSVTNLY-RTEYEGR-GE----LSARQMHLGKFLRQLARLADEFGVAVIVSNQ--- 272

Query: 206 KIGVMFGSPE----------TTTGGNALKFYSSVRLDIRR 235
               +  +PE             GGN +   S+ RL +R+
Sbjct: 273 ----VVANPEGGPFAGANALKPIGGNIMAHASTTRLALRK 308


>gi|225847919|ref|YP_002728082.1| DNA repair protein RadA [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643313|gb|ACN98363.1| DNA repair protein RadA [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 447

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 14/113 (12%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH---TIAQSQKTGGTCAFVDAEHA 106
           SG    D A+G GGF  G++V + G    GK+TL L     +A+S+K      ++ AE +
Sbjct: 72  SGFDNFDTAIG-GGFVPGQVVLVSGEPGIGKSTLLLQISSNLAKSKKV----LYISAEES 126

Query: 107 LDSIY--ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
              IY  A+++G   KNL I      +  LE     + +   D+IV+DSV  +
Sbjct: 127 SYQIYLRAQRVGALEKNLYI----LSDTNLESIVSAIENINPDLIVLDSVQTV 175


>gi|115374489|ref|ZP_01461770.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|115368468|gb|EAU67422.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
          Length = 465

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 11/110 (10%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG---GTCAFVDAEHALDSI 110
           GLD  L  GG P G    + GP  SGKT L +H +A+  + G      AF DA   + + 
Sbjct: 220 GLDTMLS-GGLPMGSTTLLLGPSGSGKTLLGIHFLAEGARRGERSHYFAFYDAPRRMLAQ 278

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
            A  +G+DL      +P   + +LE++        +D + +  +AA+  R
Sbjct: 279 TA-SVGLDL------EPFIAQGSLEVSFRAPTETILDQLGVQLLAAIRER 321


>gi|48477813|ref|YP_023519.1| DNA repair and recombination protein RadA [Picrophilus torridus DSM
           9790]
 gi|73913727|sp|Q6L126|RADA_PICTO RecName: Full=DNA repair and recombination protein radA
 gi|48430461|gb|AAT43326.1| DNA repair and recombination protein radA [Picrophilus torridus DSM
           9790]
          Length = 323

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 91/208 (43%), Gaps = 22/208 (10%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----LALHTIAQSQKTG--GTC 98
           I+ +++GS  LD  LG GG     I E +G   SGKT     LA++     +K G     
Sbjct: 86  IKKLTTGSSNLDNLLG-GGLETQSITEFFGEFGSGKTQIMHQLAVNATMPVEKNGFDSDV 144

Query: 99  AFVDAEHA------LDSIYARKLGVD--LKNLLISQPDTGEQALEITDM---LVRSGAVD 147
             +D E+       +    A+ L  D  L+ + +++       + + +    + R   + 
Sbjct: 145 LIIDTENTFRPERIIQMARAKDLDPDQTLERIHVARAYNSHHQILLAEKAADMAREYKIR 204

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++++DS+ +   R+E    +G      + +L+++ +  L    +    ++   NQ+    
Sbjct: 205 LLIVDSLTSHF-RSEY---VGRGSLAERQQLLNRHMHDLLKFGTIYNAVIAVTNQVSANP 260

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
            V FG P    GGN +   ++ R+ +R+
Sbjct: 261 AVFFGDPMNPIGGNIVGHTATFRIYLRK 288


>gi|15668429|ref|NP_247225.1| DNA repair and recombination protein RadB [Methanocaldococcus
           jannaschii DSM 2661]
 gi|2500111|sp|Q57702|RADB_METJA RecName: Full=DNA repair and recombination protein radB
 gi|1590984|gb|AAB98241.1| DNA repair protein REC [Methanocaldococcus jannaschii DSM 2661]
          Length = 212

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 82/181 (45%), Gaps = 18/181 (9%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-----SIYARKL 115
           +G   KG I +IYGP   GKT + +   + +    G   ++D E  L       I +   
Sbjct: 7   LGNAEKGIITQIYGPPGVGKTNICIIN-SINAVNSGKVIYIDTEGGLSIERIKQIASNNY 65

Query: 116 GVDLKNLLISQP-DTGEQALEITDML-VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
            + L+N++I    D  EQ   I   L + +    +IV+D++ +L  R E+  +  +++  
Sbjct: 66  KIVLENMIIYNAFDFYEQDKIIQKELPLITNNASLIVVDNITSLY-RLELSDEANKNI-- 122

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS--VRL 231
           M  +++   ++ L      +   ++  NQ+R  +     S     GG  L+++S   VRL
Sbjct: 123 MLNKMLGNQVKTLLKLAKTNNLAVIITNQVRETVNGFEAS-----GGRLLEYWSKCIVRL 177

Query: 232 D 232
           +
Sbjct: 178 E 178


>gi|222056650|ref|YP_002539012.1| circadian clock protein, KaiC [Geobacter sp. FRC-32]
 gi|221565939|gb|ACM21911.1| putative circadian clock protein, KaiC [Geobacter sp. FRC-32]
          Length = 579

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 12/128 (9%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VS+G   LD  LG  G+ +G  + + G   +GK+++A H +  + + G  C +   E 
Sbjct: 249 ERVSTGIPRLDTMLGGKGYYRGSSILVTGTAGTGKSSMAAHFVNAACRRGERCLYFAFEE 308

Query: 106 ALDSIY--ARKLGVDL-----KNLL---ISQPDTGEQALEITDM--LVRSGAVDIIVIDS 153
           +   I    R +G+DL     K LL    ++P      + +  M   V   +  I+VID 
Sbjct: 309 SQSQILRNMRSIGLDLEQWVEKGLLRFHTTRPTIYGLEMHLVTMHKAVEGFSPAIVVIDP 368

Query: 154 VAALTPRA 161
           ++ L   A
Sbjct: 369 ISNLVTTA 376


>gi|324512204|gb|ADY45060.1| DNA repair protein RAD51 A [Ascaris suum]
          Length = 346

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 91/220 (41%), Gaps = 50/220 (22%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           + +GS  L+  LG GG   G I E++G   +GK+ L  HT+A   +         G C +
Sbjct: 110 IETGSRELNRLLG-GGIETGSITEVFGEFRTGKSQLC-HTLAVMCQLPIDMGGAEGKCLW 167

Query: 101 VDAE--------------------HALDS-IYARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E                      LD+ +YAR    D +  L+ Q            M
Sbjct: 168 IDTEGTFRPERLLAVAERYKLSGQDVLDNVVYARCYNTDHQMQLLVQASA---------M 218

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR--LMSQALRKLTSSISRSKCIL 197
           +  S    ++V+DS  AL  R +  G  GE    + AR  L+ + +R L          +
Sbjct: 219 MAES-RYALLVVDSATALF-RTDFSGR-GE----LAARQMLLGKFMRTLLKLADEFGVAV 271

Query: 198 VFINQMRMKI--GVMFGSPETTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++  G+  G  +   GGN +   S+ RL +R+
Sbjct: 272 VITNQVVAQVDAGIFQGDTKKPIGGNIIAHASTTRLYLRK 311


>gi|281418344|ref|ZP_06249364.1| DNA repair protein RadA [Clostridium thermocellum JW20]
 gi|281409746|gb|EFB40004.1| DNA repair protein RadA [Clostridium thermocellum JW20]
          Length = 454

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 16/141 (11%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113
           +D  LG GG  KG ++ + G    GK+TL L  I    KT     +V  E +++ I  R 
Sbjct: 76  MDRVLG-GGIVKGSLILVGGDPGIGKSTLLLQ-ICDKIKTNAKILYVSGEESINQIKLRA 133

Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            +L V   NLL+      E   ++   L  +   D+IVIDS+  +        D   S P
Sbjct: 134 DRLNVRNPNLLM----LSETNFKVIQALSETERPDLIVIDSIQTMF------NDELPSAP 183

Query: 173 G--MQARLMSQALRKLTSSIS 191
           G   Q R ++  L ++  +++
Sbjct: 184 GSVSQVREITSGLMRIAKTLN 204


>gi|156097941|ref|XP_001615003.1| meiotic recombination protein DMC1-like protein [Plasmodium vivax
           SaI-1]
 gi|148803877|gb|EDL45276.1| meiotic recombination protein DMC1-like protein, putative
           [Plasmodium vivax]
          Length = 347

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 92/209 (44%), Gaps = 27/209 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  LD  LG GG     I E++G    GKT +  HT+A S +         G   +
Sbjct: 110 ITTGSSTLDKTLG-GGIESMSITELFGENRCGKTQIC-HTLAVSAQLPRSVGGGNGKVCY 167

Query: 101 VDAEHALD----SIYARKLGVD----LKNLLISQPDTGE---QALEITDMLVRSGAVDII 149
           +D E           A + G+D    L N+L ++  T E   Q L ++   +      ++
Sbjct: 168 IDTEGTFRPEKICKIAERYGIDGEDVLDNILYARAFTHEHLYQLLAVSAAKMCEEPFALL 227

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           V+DS+ +L  R +  G  GE L   Q +L ++ +  L+    +    ++  NQ+    G 
Sbjct: 228 VVDSIISLF-RVDFSG-RGE-LSERQQKL-NKTMSILSKLGEQFNIAVLITNQVMSDPGA 283

Query: 209 --VMFGSPETTTGGNALKFYSSVRLDIRR 235
                 +P    GG+ +   S+ RL +R+
Sbjct: 284 TMTFIANPMKPVGGHVIGHASTTRLSLRK 312


>gi|310817786|ref|YP_003950144.1| hypothetical protein STAUR_0513 [Stigmatella aurantiaca DW4/3-1]
 gi|309390858|gb|ADO68317.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 498

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 11/110 (10%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG---GTCAFVDAEHALDSI 110
           GLD  L  GG P G    + GP  SGKT L +H +A+  + G      AF DA   + + 
Sbjct: 253 GLDTMLS-GGLPMGSTTLLLGPSGSGKTLLGIHFLAEGARRGERSHYFAFYDAPRRMLAQ 311

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
            A  +G+DL      +P   + +LE++        +D + +  +AA+  R
Sbjct: 312 TA-SVGLDL------EPFIAQGSLEVSFRAPTETILDQLGVQLLAAIRER 354


>gi|308493054|ref|XP_003108717.1| hypothetical protein CRE_10879 [Caenorhabditis remanei]
 gi|308248457|gb|EFO92409.1| hypothetical protein CRE_10879 [Caenorhabditis remanei]
          Length = 390

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 93/214 (43%), Gaps = 38/214 (17%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           + +GS  LD  LG GG   G I E+YG   +GKT L  H++A   +         G C +
Sbjct: 133 IRTGSAALDRLLG-GGIETGSITEVYGEYRTGKTQLC-HSLAVLCQLPIDMGGGEGKCMY 190

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------ 146
           +D             A++  +D    L+N+ +++    E  +    +++R+GA+      
Sbjct: 191 IDTNATFRPERIIAIAQRYNMDSAHVLENIAVARAYNSEHLMA---LIIRAGAMMSESRY 247

Query: 147 DIIVIDSVAALTPRAEI--EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            ++++D   A   R E    GD+ E    + A L  + L KL      +   ++  NQ+ 
Sbjct: 248 AVVIVDCATA-HFRNEYTGRGDLAERQMKLSAFL--KCLAKLADEYGVA---VIITNQVV 301

Query: 205 MKI---GVMF-GSPETTTGGNALKFYSSVRLDIR 234
            ++     MF    +   GG+ +   S+ RL ++
Sbjct: 302 AQVDGGASMFQADAKKPIGGHIIAHMSTTRLSVK 335


>gi|322421914|ref|YP_004201137.1| DNA repair protein RadA [Geobacter sp. M18]
 gi|320128301|gb|ADW15861.1| DNA repair protein RadA [Geobacter sp. M18]
          Length = 453

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 8/111 (7%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSGS   D  LG GGF  G ++ I G   +GK+T+ L T+  +  +     +V  E +L 
Sbjct: 74  SSGSEEFDRVLG-GGFVPGSVILIGGDPGAGKSTILLQTMCHAAAS-KEVLYVSGEESLQ 131

Query: 109 SI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            I   AR+L + L  + +    + E+ LE  +    S   +++VIDS+  +
Sbjct: 132 QIAGRARRLQLPLDRVKMLAESSVERVLEAAE----SERPEVVVIDSIQVM 178


>gi|251792117|ref|YP_003006837.1| DNA repair protein RadA [Aggregatibacter aphrophilus NJ8700]
 gi|247533504|gb|ACS96750.1| DNA repair protein RadA [Aggregatibacter aphrophilus NJ8700]
          Length = 457

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 10/112 (8%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQKTGGTCAFVDAEHAL 107
           SSG   LD  LG GG   G  + I G   +GK+TL L  +   SQK   T  +V  E +L
Sbjct: 75  SSGFKELDRVLG-GGVVPGSAILIGGHPGAGKSTLLLQVMCDLSQKM--TALYVTGEESL 131

Query: 108 DSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
             +   A++LG+  + L +    + EQ   + D L       IIVIDS+  +
Sbjct: 132 QQVAMRAKRLGLPPEKLHMLSETSVEQICHLADQL----KPQIIVIDSIQVM 179


>gi|169824884|ref|YP_001692495.1| ABC transporter ATP-binding protein [Finegoldia magna ATCC 29328]
 gi|167831689|dbj|BAG08605.1| ABC transporter ATP-binding protein [Finegoldia magna ATCC 29328]
          Length = 282

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 11/121 (9%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G  KG+I  + GP  SGKTTL +++I+ S K  G    +D E   D     KL       
Sbjct: 23  GLEKGQIKALVGPNGSGKTTL-MNSISNSIKIDGGKIVIDNEQYDDEKIFNKLTFFRDET 81

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG----DMGESLPGMQARL 178
           ++     G   LE+     +    D      V  +  + EIEG     +GE   GM+ +L
Sbjct: 82  ILDFNMKGIDYLELIKNAYKKSTED------VNNICKKYEIEGFAHKRVGEYSLGMKKKL 135

Query: 179 M 179
           M
Sbjct: 136 M 136


>gi|326427309|gb|EGD72879.1| hypothetical protein PTSG_04608 [Salpingoeca sp. ATCC 50818]
          Length = 347

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+G   +D  LG  G P G+I +++G  S+GKT + L   A +   G      D+    
Sbjct: 81  VSTGVHTIDDLLGGRGLPAGKITQLFGRSSTGKTQVCLTAAASAACEGHQVVIFDS---- 136

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEI 136
           +S YA +    L++++  + D   QA+++
Sbjct: 137 NSSYAAE---RLRDIIEHKADASHQAVDV 162


>gi|315425319|dbj|BAJ46986.1| DNA repair protein RadB [Candidatus Caldiarchaeum subterraneum]
          Length = 214

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 50/120 (41%), Gaps = 9/120 (7%)

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV--DLKNLLISQPDT 129
           +YG E SGKT L L   A+  + GG   ++D    L     R++     L  L ISQP T
Sbjct: 22  LYGEEKSGKTALLLTAAAKIAEKGGKVVWIDCGARLHPARLRQIFPVERLSQLYISQPRT 81

Query: 130 ----GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
                E  L + D         +IV D    L  + E+ G     LP  +A  +  AL K
Sbjct: 82  FREQFETLLNVHDF--PPSDASLIVCDDFTYLH-KLELSGKPSTDLPVYRALSLQAALLK 138


>gi|303234222|ref|ZP_07320868.1| ABC transporter, ATP-binding protein [Finegoldia magna BVS033A4]
 gi|302494763|gb|EFL54523.1| ABC transporter, ATP-binding protein [Finegoldia magna BVS033A4]
          Length = 282

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 11/121 (9%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G  KG+I  + GP  SGKTTL +++I+ S K  G    +D E   D     KL       
Sbjct: 23  GLEKGQIKALVGPNGSGKTTL-MNSISNSIKIDGGKIVIDNEQYDDEKIFNKLTFFRDET 81

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG----DMGESLPGMQARL 178
           ++     G   LE+     +    D      V  +  + EIEG     +GE   GM+ +L
Sbjct: 82  ILDFNMKGIDYLELIKNAYKKSTED------VNNICKKYEIEGFAHKRVGEYSLGMKKKL 135

Query: 179 M 179
           M
Sbjct: 136 M 136


>gi|145590491|ref|YP_001152493.1| putative circadian clock protein, KaiC [Pyrobaculum arsenaticum DSM
           13514]
 gi|145282259|gb|ABP49841.1| putative circadian clock protein, KaiC [Pyrobaculum arsenaticum DSM
           13514]
          Length = 267

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+G   LD AL  GG P+G  V + G    GK+ L +H      ++G    +V  E   
Sbjct: 4   VSTGVEELDRALE-GGIPQGSWVVVTGEPGVGKSILCMHFAYAGLRSGDPVVYVTTEQEF 62

Query: 108 DSIY--ARKLGVDLKNL 122
             +   AR+LG+D    
Sbjct: 63  RDVMEQARQLGMDFSKF 79


>gi|302379737|ref|ZP_07268222.1| ABC transporter, ATP-binding protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|302312644|gb|EFK94640.1| ABC transporter, ATP-binding protein [Finegoldia magna
           ACS-171-V-Col3]
          Length = 282

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 11/121 (9%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G  KG+I  + GP  SGKTTL +++I+ S K  G    +D E   D     KL       
Sbjct: 23  GLEKGQIKALVGPNGSGKTTL-MNSISNSIKIDGGKIVIDNEQYDDEKIFNKLTFFRDET 81

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG----DMGESLPGMQARL 178
           ++     G   LE+     +    D      V  +  + EIEG     +GE   GM+ +L
Sbjct: 82  ILDFNMKGIDYLELIKNAYKKSTED------VNNICKKYEIEGFAHKRVGEYSLGMKKKL 135

Query: 179 M 179
           M
Sbjct: 136 M 136


>gi|197092365|gb|ACH42255.1| RAD51D protein [Triticum aestivum]
          Length = 246

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQKTGGTCAFV 101
           EG   + +G  G+D  LG GG  KG++ EI G  SSGKT + L++ A  + +  G   ++
Sbjct: 9   EGKHFLPTGLEGIDTLLG-GGLRKGQLTEITGQSSSGKTQVCLYSAAHVAARHMGAVLYL 67

Query: 102 DAEHALDSIYARKLGVDLKNLLISQP 127
           D  ++        +  +L   LI +P
Sbjct: 68  DTSNSFSPSRIAHILDELPISLIKEP 93


>gi|148223319|ref|NP_001080559.1| DNA repair protein RAD51 homolog B [Xenopus laevis]
 gi|2500106|sp|Q91917|RA51B_XENLA RecName: Full=DNA repair protein RAD51 homolog B; Short=xRAD51.2
 gi|1054622|dbj|BAA07500.1| XRad51.2 [Xenopus laevis]
 gi|28302165|gb|AAH46650.1| Rad51 protein [Xenopus laevis]
 gi|80477159|gb|AAI08487.1| Rad51 protein [Xenopus laevis]
          Length = 336

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 90/221 (40%), Gaps = 51/221 (23%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           + +GS  LD  L  GG   G I E++G   +GKT L  HT+A + +         G   +
Sbjct: 99  IGTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQLC-HTLAVTCQLPIDRGGGEGKAMY 156

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E                      LD++ YAR    D +  L+ Q            M
Sbjct: 157 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASA---------M 207

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197
           +  S    ++++DS  AL  R +  G  GE    + AR M  A  LR L          +
Sbjct: 208 MAES-RYALLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 260

Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           V  NQ+  ++    MF + P+   GGN +   S+ RL +R+
Sbjct: 261 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 301


>gi|308453438|ref|XP_003089441.1| hypothetical protein CRE_02731 [Caenorhabditis remanei]
 gi|308240341|gb|EFO84293.1| hypothetical protein CRE_02731 [Caenorhabditis remanei]
          Length = 390

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 93/214 (43%), Gaps = 38/214 (17%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           + +GS  LD  LG GG   G I E+YG   +GKT L  H++A   +         G C +
Sbjct: 133 IRTGSAALDRLLG-GGIETGSITEVYGEYRTGKTQLC-HSLAVLCQLPIDMGGGEGKCMY 190

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------ 146
           +D             A++  +D    L+N+ +++    E  +    +++R+GA+      
Sbjct: 191 IDTNATFRPERIIAIAQRYNMDSAHVLENIAVARAYNSEHLMA---LIIRAGAMMSESRY 247

Query: 147 DIIVIDSVAALTPRAEI--EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            ++++D   A   R E    GD+ E    + A L  + L KL      +   ++  NQ+ 
Sbjct: 248 AVVIVDCATA-HFRNEYTGRGDLAERQMKLSAFL--KCLAKLADEYGVA---VIITNQVV 301

Query: 205 MKI---GVMF-GSPETTTGGNALKFYSSVRLDIR 234
            ++     MF    +   GG+ +   S+ RL ++
Sbjct: 302 AQVDGGASMFQADAKKPIGGHIIAHMSTTRLSVK 335


>gi|154314604|ref|XP_001556626.1| hypothetical protein BC1G_04011 [Botryotinia fuckeliana B05.10]
 gi|150848633|gb|EDN23826.1| hypothetical protein BC1G_04011 [Botryotinia fuckeliana B05.10]
          Length = 349

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 93/213 (43%), Gaps = 33/213 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G + EI+G   +GK+ +  HT+A + +         G C +
Sbjct: 104 ITTGSKQLDTLLA-GGVETGSVTEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 161

Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDII 149
           +D E     +     A + G+     L N+  ++    +  L++ +    ++      ++
Sbjct: 162 IDTEGTFRPVRLLAVANRYGLSGEEVLDNVAYARAYNSDHQLQLLNQAAQMMCETRFSLL 221

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMKI 207
           ++DS  AL  R +  G  GE    + +R M  A  +R L          +V  NQ+  ++
Sbjct: 222 IVDSATALY-RTDFTG-RGE----LSSRQMHLAKFMRMLQRLADEFGIAVVITNQVVAQV 275

Query: 208 ----GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
                 MF   P+   GGN +   S+ RL +++
Sbjct: 276 DGGPSAMFNPDPKKPIGGNIIAHASTTRLSLKK 308


>gi|110835046|ref|YP_693905.1| DNA repair protein RadA [Alcanivorax borkumensis SK2]
 gi|110648157|emb|CAL17633.1| DNA repair protein RadA [Alcanivorax borkumensis SK2]
          Length = 457

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 8/119 (6%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + E    +SSG   LD  LG GG   G  + I G   +GK+TL L T+ +   +  +C +
Sbjct: 70  VLEETPRISSGMGELDRVLG-GGLVPGSAILIGGHPGAGKSTLLLQTLCRLSDS-QSCLY 127

Query: 101 VDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           +  E +L  +  R  +L +  + L ++     EQ LE    L R     ++V+DS+  +
Sbjct: 128 ITGEESLSQVAMRADRLKLPKEKLRLAAETDVEQILE----LARKEMPKVLVVDSIQVM 182


>gi|156053229|ref|XP_001592541.1| DNA repair protein rhp51 [Sclerotinia sclerotiorum 1980]
 gi|154704560|gb|EDO04299.1| DNA repair protein rhp51 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 349

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 93/213 (43%), Gaps = 33/213 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G + EI+G   +GK+ +  HT+A + +         G C +
Sbjct: 104 ITTGSKQLDTLLA-GGVETGSVTEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 161

Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDII 149
           +D E     +     A + G+     L N+  ++    +  L++ +    ++      ++
Sbjct: 162 IDTEGTFRPVRLLAVANRYGLSGEEVLDNVAYARAYNSDHQLQLLNQAAQMMCETRFSLL 221

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMKI 207
           ++DS  AL  R +  G  GE    + +R M  A  +R L          +V  NQ+  ++
Sbjct: 222 IVDSATALY-RTDFTG-RGE----LSSRQMHLAKFMRMLQRLADEFGIAVVITNQVVAQV 275

Query: 208 ----GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
                 MF   P+   GGN +   S+ RL +++
Sbjct: 276 DGGPSAMFNPDPKKPIGGNIIAHASTTRLSLKK 308


>gi|238650312|ref|YP_002916164.1| DNA repair protein RadA [Rickettsia peacockii str. Rustic]
 gi|238624410|gb|ACR47116.1| DNA repair protein RadA [Rickettsia peacockii str. Rustic]
          Length = 444

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 4/101 (3%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG   G  + I G    GK+TL L   A +  +   C ++  E +LD I  R + ++L N
Sbjct: 77  GGLVLGSAILIGGDPGIGKSTLLLQLAASNFASKMNCLYITGEESLDQIKLRAIRLNLTN 136

Query: 122 LLISQPDTGEQALE--ITDMLVRSGAVDIIVIDSVAALTPR 160
              +        LE  I  +      +D+IVIDS+  +T +
Sbjct: 137 Y--NTDILAATNLEDIIASIEANKNNIDLIVIDSIQTITTK 175


>gi|213515370|ref|NP_001134027.1| DNA repair protein RAD51 homolog A [Salmo salar]
 gi|209156210|gb|ACI34337.1| DNA repair protein RAD51 homolog A [Salmo salar]
          Length = 338

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 91/219 (41%), Gaps = 47/219 (21%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS------QKTG-GTCAF 100
           +S+GS  LD  L  GG   G I E++G   +GKT L  HT+A +      Q  G G   +
Sbjct: 101 ISTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQLC-HTLAVTCQLPIDQGGGEGKAMY 158

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E                      LD++ YAR    D +  L+ Q            M
Sbjct: 159 IDTEGTFRPERLLAVAERYGLVGSDVLDNVAYARAFNTDHQTQLLYQASA---------M 209

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           +  S    ++++DS  AL  R +  G  GE L   Q  L  + LR L          +V 
Sbjct: 210 MAES-RYALLIVDSATALY-RTDYSG-RGE-LAARQGHL-GRFLRMLLRLADEFGVAVVI 264

Query: 200 INQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
            NQ+  ++    MF + P+   GGN +   S+ RL +R+
Sbjct: 265 TNQVVAQVDGAAMFSADPKKPIGGNIMAHASTTRLYLRK 303


>gi|115385342|ref|XP_001209218.1| meiotic recombination protein DMC1 [Aspergillus terreus NIH2624]
 gi|114196910|gb|EAU38610.1| meiotic recombination protein DMC1 [Aspergillus terreus NIH2624]
          Length = 607

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 97/230 (42%), Gaps = 33/230 (14%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQK----TGG 96
           G +V S   L   +     GF    I E++G    GKT L+ HT   +AQ  K      G
Sbjct: 25  GGQVTSLSRLLHALLTAFRGFQSMSISEVFGEFRCGKTQLS-HTMSVVAQLPKEMGGAEG 83

Query: 97  TCAFVDAEHALD----SIYARKLGVDL----KNLLISQPDTGEQALEITDMLVR---SGA 145
             A++D E        +  A + GVD     +N+  ++    E  LE+ + L R   SG 
Sbjct: 84  KVAYIDTEGTFRPERIAQIAERFGVDPDSAQENIAYARALNSEHQLELLNTLSREFASGD 143

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
             +++IDS+     R +  G  GE L   Q +L +Q L KL          ++  NQ++ 
Sbjct: 144 YRLLIIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFNVCVLMTNQVQS 199

Query: 206 KIG--VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
             G   +F   +     GG+ L   S+ R+ +R      RV  I+D   I
Sbjct: 200 DPGASALFAGADGRKPVGGHVLAHASTTRVLLRKGRGDERVAKIQDSPDI 249


>gi|15892733|ref|NP_360447.1| DNA repair protein RadA [Rickettsia conorii str. Malish 7]
 gi|20178052|sp|Q92HG1|RADA_RICCN RecName: Full=DNA repair protein RadA homolog; AltName: Full=DNA
           repair protein Sms homolog
 gi|15619909|gb|AAL03348.1| DNA repair protein RadA homolog [Rickettsia conorii str. Malish 7]
          Length = 444

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 4/101 (3%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG   G  + I G    GK+TL L   A +  +   C ++  E +LD I  R + ++L N
Sbjct: 77  GGLVLGSAILIGGDPGIGKSTLLLQLAASNFASKMNCLYITGEESLDQIKLRAIRLNLTN 136

Query: 122 LLISQPDTGEQALE--ITDMLVRSGAVDIIVIDSVAALTPR 160
              +        LE  I  +      +D+IVIDS+  +T +
Sbjct: 137 Y--NTDILAATNLENIIASIEANKNNIDLIVIDSIQTITTK 175


>gi|183579817|emb|CAK26104.1| mutS homologue [Leishmania turanica]
          Length = 1378

 Score = 38.5 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 15/136 (11%)

Query: 49   SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA-- 106
            S  S GL ++ G GG   G +  + GP + GKTTL L  + Q         FV A+HA  
Sbjct: 1137 SDSSGGLTMSWGSGG---GHVCVVTGPNACGKTTL-LRILGQYFTLAQAGCFVPAQHAQL 1192

Query: 107  --LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
               D + A  L  +L +  I+      + +E++++   + A  + +ID +   T  A+  
Sbjct: 1193 FLADRLLAHMLCDELPS--ITHSSFRRELMELSELTHAATAESVALIDELGRSTTTAQ-- 1248

Query: 165  GDMGESLPGMQARLMS 180
               G SL    A L+S
Sbjct: 1249 ---GFSLAWATALLLS 1261


>gi|170749374|ref|YP_001755634.1| circadian clock protein KaiC [Methylobacterium radiotolerans JCM
           2831]
 gi|170655896|gb|ACB24951.1| putative circadian clock protein, KaiC [Methylobacterium
           radiotolerans JCM 2831]
          Length = 562

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC-AFVDAEH 105
           ++S+G  GLD  LG  GF +G  + I G   +GK+ LA   +  + + G  C AFV  E 
Sbjct: 252 ILSTGIAGLDAMLGPRGFHRGSGILISGEAGTGKSMLAASILDAACRRGEHCLAFVFEES 311

Query: 106 ALDSIY-ARKLGVDL 119
               I  AR +G+DL
Sbjct: 312 GAQIIRNARSIGLDL 326


>gi|156549000|ref|XP_001607292.1| PREDICTED: similar to ATP-binding cassette protein C12 [Nasonia
           vitripennis]
          Length = 1365

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99
           PKG++V +YG + SGKT+  L  + Q Q  GGT A
Sbjct: 521 PKGKLVGLYGRQDSGKTSFLLSILGQLQCVGGTVA 555


>gi|157828679|ref|YP_001494921.1| DNA repair protein RadA [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933398|ref|YP_001650187.1| DNA repair protein RadA [Rickettsia rickettsii str. Iowa]
 gi|157801160|gb|ABV76413.1| predicted repair protein [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908485|gb|ABY72781.1| DNA repair protein [Rickettsia rickettsii str. Iowa]
          Length = 444

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 4/101 (3%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG   G  + I G    GK+TL L   A +  +   C ++  E +LD I  R + ++L N
Sbjct: 77  GGLVLGSAILIGGDPGIGKSTLLLQLAASNFASKMNCLYITGEESLDQIKLRAIRLNLTN 136

Query: 122 LLISQPDTGEQALE--ITDMLVRSGAVDIIVIDSVAALTPR 160
              +        LE  I  +      +D+IVIDS+  +T +
Sbjct: 137 Y--NTDILAATNLEDIIASIEANKNNIDLIVIDSIQTITTK 175


>gi|225377026|ref|ZP_03754247.1| hypothetical protein ROSEINA2194_02670 [Roseburia inulinivorans DSM
           16841]
 gi|225211123|gb|EEG93477.1| hypothetical protein ROSEINA2194_02670 [Roseburia inulinivorans DSM
           16841]
          Length = 633

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 100/237 (42%), Gaps = 43/237 (18%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA-----------FVDAEHAL-DSIYA 112
           P G++  + G    GKTT AL  +A +  TGGT             +  AE  L D++  
Sbjct: 330 PFGKVTIVQGNPGEGKTTFALR-LAAACTTGGTLPGMKPLPPFQVIYQTAEDGLGDTVKP 388

Query: 113 R--KLGVDLKNLLISQPDTGEQALEITD-----MLVRSGAVDIIVIDSVAALTPRAEIEG 165
           R  +   DL  +L+   D  ++ L ++D      + ++GA  +I++D + A         
Sbjct: 389 RLIEAAADLDRVLVI--DEAKRELTLSDERIEKAITQNGA-RLIILDPIQAY-------- 437

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
            MGE     +A  +    R+L     R+ C ++ I  +        G      G  ++ F
Sbjct: 438 -MGEKTDMNRANEVRPMFRRLADVAERTGCAVILIGHLNKAA----GGQSAYRGLGSIDF 492

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVV-KNKMASPFKQVEFDIMYGEGISFFGE 281
            ++ R  +  +G +K + ++     RV V  K+ +A   K V F +    G S+ GE
Sbjct: 493 RAAAR-SVLLIGRVKREPNV-----RVIVHDKSSLAPEGKPVAFCLDPETGFSWIGE 543


>gi|18389304|dbj|BAB84121.1| OsDmc1 protein [Oryza sativa Japonica Group]
          Length = 344

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 91/208 (43%), Gaps = 26/208 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS  LD  LG GG     I E +G   SGKT LA HT+  S +         G  A+
Sbjct: 108 ITTGSQALDELLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSTQLPIHMHGGNGKVAY 165

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149
           +D E           A + G+D    L N++ ++  T E    +   L    A +    +
Sbjct: 166 IDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRPL 225

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           ++DSV AL  R +  G  GE L   Q +L +Q L +LT         +   NQ+      
Sbjct: 226 IVDSVIALF-RVDFSGR-GE-LAERQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
           G+     +   GG+ L   +++RL +R+
Sbjct: 282 GMFITDLKKPAGGHVLAHAATIRLMLRK 309


>gi|296114213|ref|ZP_06832868.1| DNA repair protein RadA [Gluconacetobacter hansenii ATCC 23769]
 gi|295979289|gb|EFG86012.1| DNA repair protein RadA [Gluconacetobacter hansenii ATCC 23769]
          Length = 464

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 12/146 (8%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YA 112
           LD  LG GG     +V + G    GK+TL L         G    ++  E A+D I   A
Sbjct: 79  LDRVLG-GGMVPASVVLVGGDPGIGKSTLLLQGACALAAMGRRVMYISGEEAVDQIRLRA 137

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           R+LG+D   L ++         +IT  L     V ++VIDS+  +        +  ES P
Sbjct: 138 RRLGLDTPGLELA---AAINVADITATLEGERDVALVVIDSIQTMW------METVESAP 188

Query: 173 GMQARLMSQALRKLTSSISRSKCILV 198
           G  +++ S A   +  +  R  C+++
Sbjct: 189 GTVSQVRSSAFELIRLAKQRGFCLML 214


>gi|315633922|ref|ZP_07889211.1| DNA repair protein RadA [Aggregatibacter segnis ATCC 33393]
 gi|315477172|gb|EFU67915.1| DNA repair protein RadA [Aggregatibacter segnis ATCC 33393]
          Length = 457

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 10/112 (8%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQKTGGTCAFVDAEHAL 107
           SSG   LD  LG GG   G  + I G   +GK+TL L  +   SQK   T  +V  E +L
Sbjct: 75  SSGFYELDRVLG-GGVVPGSAILIGGHPGAGKSTLLLQVMCYLSQKM--TALYVTGEESL 131

Query: 108 DSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
             +   A++LG+  + L +    + EQ   + D L       IIVIDS+  +
Sbjct: 132 QQVAMRAKRLGLPPEKLNMLSETSVEQICNLADQL----KPQIIVIDSIQVM 179


>gi|194173083|ref|YP_002003727.1| DNA replicative helicase/primase [Escherichia phage rv5]
 gi|114796121|gb|ABI79295.1| DNA replicative helicase/primase [Escherichia phage rv5]
          Length = 692

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 85/209 (40%), Gaps = 44/209 (21%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLAL---HTIAQSQKTGGTCAFVD--------------- 102
           + G  KG ++ + GP   GKTT+A    H IA+      TC   D               
Sbjct: 343 LKGLHKGTLMMLTGPSGGGKTTVAKKLEHCIAKYL-MDPTCPKADDYEEDDRLCLIHLEE 401

Query: 103 -AEHALDSIYARKLGVDLKNLL--ISQPDTGEQALEITDMLVRSGAVDI------IVIDS 153
             E A++S+YA +LG D+K  +   SQ  T ++  EI     ++G + +      I +D 
Sbjct: 402 DPEEAINSLYANQLGFDVKEFVEDPSQFLTDQEHAEIHQSWAKAGKIKVFKHFGSIPVDE 461

Query: 154 --------VAALTPRAEIEGDMGESLPGM----QARLMSQALRKLTSSISRSKCILVFIN 201
                   V     R  +   +   + G+    + + +  A+ +L +   +    ++ I 
Sbjct: 462 LITKLKQMVCLYHCRYIVLDHLSMVISGLNVKDERKELDMAMTQLAAFCKQFNVFILVIA 521

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVR 230
            ++ +I ++   P     GN L F+  VR
Sbjct: 522 HLK-RIEIV---PPKDKDGNPLPFWYPVR 546


>gi|219848051|ref|YP_002462484.1| putative circadian clock protein, KaiC [Chloroflexus aggregans DSM
           9485]
 gi|219542310|gb|ACL24048.1| putative circadian clock protein, KaiC [Chloroflexus aggregans DSM
           9485]
          Length = 482

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  +S+G  GLD   G G  P    +   GP  +GKTTL LH +A    TG T  F+  
Sbjct: 5   AITRLSTGIPGLDEITGGGLVPHYAYLVRGGP-GAGKTTLGLHFLAAGTATGETSLFISL 63

Query: 104 EHALDSIY--ARKLGVDLKNLLI 124
           E +   I   A ++G+DL  + I
Sbjct: 64  EESAAKIRRNAAQIGIDLSQVHI 86


>gi|254428451|ref|ZP_05042158.1| DNA repair protein RadA [Alcanivorax sp. DG881]
 gi|196194620|gb|EDX89579.1| DNA repair protein RadA [Alcanivorax sp. DG881]
          Length = 457

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 8/119 (6%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + E    +SSG   LD  LG GG   G  + I G   +GK+TL L T+ +   +  +C +
Sbjct: 70  VLEETPRISSGMGELDRVLG-GGLVPGSAILIGGHPGAGKSTLLLQTLCKLSDS-QSCLY 127

Query: 101 VDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           +  E +L  +  R  +L +  + L ++     EQ LE    L R     ++V+DS+  +
Sbjct: 128 ITGEESLSQVAMRADRLKLPKEKLRLAAETDVEQILE----LARKEMPRVLVVDSIQVM 182


>gi|170035198|ref|XP_001845458.1| DNA repair protein RAD51 [Culex quinquefasciatus]
 gi|167877010|gb|EDS40393.1| DNA repair protein RAD51 [Culex quinquefasciatus]
          Length = 349

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 99/212 (46%), Gaps = 33/212 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA------QSQKTG-GTCAF 100
           +++GS  LD  LG GG   G I E++G   +GKT L  HT+A       SQ  G G C +
Sbjct: 112 LTTGSKELDKLLG-GGIETGSITELFGEFRTGKTQLC-HTLAVTCQLPVSQNGGEGKCLY 169

Query: 101 VDAEHAL--DSIYA-----RKLGVD-LKNLLISQPDTGEQALEITDMLVRSGAV------ 146
           +D E     + + A     + +G D L N+  ++    +  ++   +LV++ A+      
Sbjct: 170 IDTEGTFRPERLLAVADRYKLVGSDVLDNVAYARAYNSDHQMQ---LLVQASAMMAESRY 226

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++++DS  AL  R +  G  GE L   Q  L  + LR L          ++  NQ+  +
Sbjct: 227 ALLIVDSATALF-RTDYAG-RGE-LNARQVNL-GKFLRMLLRLADEFGVAVIITNQVVAQ 282

Query: 207 I--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           +    MF   P+   GG+ +   S+ RL +R+
Sbjct: 283 VDASAMFTPDPKKPIGGHIIAHASTTRLYLRK 314


>gi|157964677|ref|YP_001499501.1| DNA repair protein RadA [Rickettsia massiliae MTU5]
 gi|157844453|gb|ABV84954.1| DNA repair protein RadA [Rickettsia massiliae MTU5]
          Length = 444

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 10/123 (8%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG   G  + I G    GK+TL L   A +  +   C ++  E +LD I  R + ++L N
Sbjct: 77  GGLVLGSAILIGGDPGIGKSTLLLQLAASNFASKMNCLYITGEESLDQIKLRAIRLNLTN 136

Query: 122 LLISQPDTGEQALE--ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
              +        LE  I  +      +D+IVIDS+  +T +         S PG  A++ 
Sbjct: 137 Y--NTDILAATNLEDIIASIEANKNNIDLIVIDSIQTITTKEL------SSPPGTVAQIR 188

Query: 180 SQA 182
           + A
Sbjct: 189 TCA 191


>gi|297588593|ref|ZP_06947236.1| ABC superfamily ATP binding cassette transporter ABC protein
           [Finegoldia magna ATCC 53516]
 gi|297573966|gb|EFH92687.1| ABC superfamily ATP binding cassette transporter ABC protein
           [Finegoldia magna ATCC 53516]
          Length = 282

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 11/118 (9%)

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KG+I  + GP  SGKTTL +++I+ S K  G    +D E   D     KL       ++ 
Sbjct: 26  KGKIKALVGPNGSGKTTL-MNSISNSIKLDGGKILIDDEQYSDEKIFNKLTFFRDETILD 84

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG----DMGESLPGMQARLM 179
               G   LE+        +      D V  +  + EIEG     +GE   GM+ +LM
Sbjct: 85  GNMKGIDYLELIKNAYNKNS------DDVNNICKKFEIEGFVNKRVGEYSLGMKKKLM 136


>gi|15888420|ref|NP_354101.1| DNA repair protein RadA [Agrobacterium tumefaciens str. C58]
 gi|15156108|gb|AAK86886.1| DNA repair protein [Agrobacterium tumefaciens str. C58]
          Length = 468

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 76/182 (41%), Gaps = 14/182 (7%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N + +   +    S   +V  KG  + L S     E    + +G   LD A G GGF 
Sbjct: 29  EWNTIVEEDPMGGIGSGPGKVPKKGRPVTLTSLSGEIEEAPRIPTGISELDRATG-GGFV 87

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLL 123
           +G  V I G    GK+TL +   A   + G    +V  E A+  +   A++LG    ++L
Sbjct: 88  RGSAVLIGGDPGIGKSTLLMQAAAALSRRGHRVIYVSGEEAVAQVRLRAQRLGSADTDVL 147

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQ 181
           ++     E  L       R    D+I+IDS+  L        D  +S PG   Q R   Q
Sbjct: 148 LAAETNVEDILATVSEGKRP---DLIIIDSIQTLW------SDTADSAPGTVTQVRTGVQ 198

Query: 182 AL 183
           A+
Sbjct: 199 AM 200


>gi|156098342|ref|XP_001615203.1| DNA repair protein RAD51 [Plasmodium vivax SaI-1]
 gi|148804077|gb|EDL45476.1| DNA repair protein RAD51, putative [Plasmodium vivax]
          Length = 350

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 98/211 (46%), Gaps = 33/211 (15%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-----QKTG--GTCAFV 101
           ++GS  LD +L  GG   G I E++G   +GK+ L  HT+A +     +++G  G C ++
Sbjct: 113 TTGSKQLD-SLLKGGIETGGITELFGEFRTGKSQLC-HTLAITCQLPIEQSGGEGKCLWI 170

Query: 102 DAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------D 147
           D E           A++ G+     L N+  ++    +     T++L+ + A+       
Sbjct: 171 DTEGTFRPERIVAIAKRYGLHPTDCLNNIAYAKAYNCDHQ---TELLIDASAMMADARFA 227

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++++DS  AL  R+E  G  GE L   Q+ L  + LR L          ++  NQ+  K+
Sbjct: 228 LLIVDSATALY-RSEYIG-RGE-LASRQSHL-CRFLRGLQRIADIYGVAVIITNQVVAKV 283

Query: 208 GV--MFGSPET-TTGGNALKFYSSVRLDIRR 235
               MFG  E    GGN +   S  RL +R+
Sbjct: 284 DAMSMFGGHEKIPIGGNIIAHASQTRLYLRK 314


>gi|261334168|emb|CBH17162.1| recombinase rad51, putative [Trypanosoma brucei gambiense DAL972]
          Length = 507

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 7/68 (10%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT----TLALHTIAQSQKTG--G 96
           +GIE V++    LDI LG GG   G + EI GP   GKT     LA++ +   +  G  G
Sbjct: 101 KGIENVTTLCRSLDILLG-GGLQVGTLTEICGPPGVGKTQLSMQLAVNCVLPKELGGLQG 159

Query: 97  TCAFVDAE 104
            C F+D E
Sbjct: 160 GCLFIDTE 167


>gi|186473596|ref|YP_001860938.1| putative circadian clock protein, KaiC [Burkholderia phymatum
           STM815]
 gi|184195928|gb|ACC73892.1| putative circadian clock protein, KaiC [Burkholderia phymatum
           STM815]
          Length = 479

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI--AQSQKTGGTCAFVDAEH 105
           +++G  GLD  LG GG P   +  + GP  SGKTT  L  +  A  ++ G    F +   
Sbjct: 243 LTTGVAGLDERLG-GGLPHNSVSVLVGPAGSGKTTFGLTFLKEATRERPGVHFGFYETPE 301

Query: 106 ALDSIYARKLGVDLKNLLIS 125
            L    A  LG+DL+ L  S
Sbjct: 302 RL-CTKAHALGIDLQGLAAS 320


>gi|322815381|gb|EFZ24045.1| DNA recombination and repair protein RAD51, putative [Trypanosoma
           cruzi]
          Length = 492

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 7/65 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT----TLALHTIAQSQKTG--GTCA 99
           E V++   G+D  LG GG P G + E+ GP   GKT     LA++ +   +  G  G+C 
Sbjct: 121 ERVTTFCRGIDTLLG-GGLPVGTVSEVCGPPGVGKTQMLMQLAVNCLLPRELGGLHGSCL 179

Query: 100 FVDAE 104
           F+D E
Sbjct: 180 FIDTE 184


>gi|225027631|ref|ZP_03716823.1| hypothetical protein EUBHAL_01888 [Eubacterium hallii DSM 3353]
 gi|224955040|gb|EEG36249.1| hypothetical protein EUBHAL_01888 [Eubacterium hallii DSM 3353]
          Length = 479

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 9/112 (8%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSG   LD  LG GG  KG +  + G    GK+TL L        +G    +V  E +L 
Sbjct: 96  SSGIPELDRVLG-GGIVKGSLTLVGGDPGIGKSTLLLQICRYQANSGKKVVYVSGEESLK 154

Query: 109 SI--YARKLGVDLKNL-LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            I   A++LG   +N+ L+ + D    A       VR    D++V+DSV  +
Sbjct: 155 QIKMRAQRLGGFKQNVFLLCETDINAAA-----EAVREAKPDMVVVDSVQTM 201


>gi|121601948|ref|YP_988804.1| DNA repair protein RadA [Bartonella bacilliformis KC583]
 gi|120614125|gb|ABM44726.1| DNA repair protein RadA [Bartonella bacilliformis KC583]
          Length = 457

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 14/159 (8%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG ++ L S     +    + SG   LD   G GGF +G  + + G    GK+TL   T 
Sbjct: 52  KGRVIALTSLSGDIKDAPRIHSGIAELDRVTG-GGFVRGSALLVGGDPGIGKSTLLTQTA 110

Query: 89  AQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           A   + G    +V  E A++ I   A++LG     + ++     E   +I   L     +
Sbjct: 111 AALSQKGHHVIYVSGEEAVEQIRLRAQRLGAADTAVQLAAETNVE---DILATLNEHKKL 167

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQAL 183
           D+++IDS+  L        D  ES PG   Q R+ +Q +
Sbjct: 168 DMVIIDSIQTLW------SDATESAPGTVTQVRISAQEI 200


>gi|71754847|ref|XP_828338.1| recombinase Rad51 [Trypanosoma brucei TREU927]
 gi|70833724|gb|EAN79226.1| recombinase Rad51, putative [Trypanosoma brucei]
          Length = 507

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 7/68 (10%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT----TLALHTIAQSQKTG--G 96
           +GIE V++    LDI LG GG   G + EI GP   GKT     LA++ +   +  G  G
Sbjct: 101 KGIENVTTLCRSLDILLG-GGLQVGTLTEICGPPGVGKTQLSMQLAVNCVLPKELGGLQG 159

Query: 97  TCAFVDAE 104
            C F+D E
Sbjct: 160 GCLFIDTE 167


>gi|209879790|ref|XP_002141335.1| meiotic recombination protein DMC1-like protein [Cryptosporidium
           muris RN66]
 gi|209556941|gb|EEA06986.1| meiotic recombination protein DMC1-like protein, putative
           [Cryptosporidium muris RN66]
          Length = 342

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 89/215 (41%), Gaps = 39/215 (18%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           +++GS   D  L +GGF    I EI+G    GKT +  HT+  + +         G   F
Sbjct: 105 ITTGSEQFDKML-LGGFESMCITEIFGENRCGKTQIC-HTLCVTAQLPTEMSGANGKVCF 162

Query: 101 VDAEHALDSIYARKLG--------VDLKNLLISQPDTGEQALEITDMLVRSGA------- 145
           +D E         K+         V L N+L ++  T E      + L+ + A       
Sbjct: 163 IDTEGTFRPERIAKISERFGLQGDVTLDNILYARAYTHEH----LNQLISAAAGKMIEER 218

Query: 146 VDIIVIDSVAALTPRAEI--EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ- 202
             ++++DS+ AL  R E    G++ E     + +++++ L KL     +    +V  N  
Sbjct: 219 FALLIVDSIIALF-RTEFSGRGELAE-----RQQILNKTLSKLNKLADQFNIAVVMTNHV 272

Query: 203 MRMKIGVMFGSPETT--TGGNALKFYSSVRLDIRR 235
           M    G M   P      GG+ +   S VRL +R+
Sbjct: 273 MADPAGGMTFMPNIAKPVGGHIIGHASHVRLSLRK 307


>gi|154340868|ref|XP_001566387.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063710|emb|CAM39895.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 634

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 25/43 (58%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           GS+       S+G LGLD ALG  GF  G + E+YG   +GKT
Sbjct: 256 GSMDAPPYWCSTGCLGLDQALGGRGFRSGWVTEVYGEAGAGKT 298


>gi|147920562|ref|YP_685641.1| DNA repair and recombination protein RadA [uncultured methanogenic
           archaeon RC-I]
 gi|110621037|emb|CAJ36315.1| DNA repair/recombination protein A [uncultured methanogenic
           archaeon RC-I]
          Length = 323

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 89/208 (42%), Gaps = 33/208 (15%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-------QSQKTGGTCAFVDAEHAL 107
           LD  LG GG     I E YG   SGKT +A H +A       +    GG+   +D E+  
Sbjct: 90  LDDLLG-GGVETQSITEFYGEFGSGKTQVA-HQLAVNVQLPPEQGGLGGSVVMIDTENTF 147

Query: 108 DS------IYARKLGVDL------KNLLISQPDTG-------EQALEITDMLVRSG-AVD 147
                   +   K G DL      KN+ +++           E A E+ + +  S   V 
Sbjct: 148 RPERIAQMVKGLKGGEDLDPEDFLKNIHVARAYNSNHQILLVESASELAEKMRDSDRPVK 207

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +I++DS+ A   R+E  G    +L   Q +L ++ +  L      +   +V  NQ++ K 
Sbjct: 208 LIIVDSLTAHF-RSEYVGRG--TLADRQQKL-NKHMHDLMRFGDINNAAIVVTNQVQAKP 263

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235
              FG P    GG+ +   ++ RL +R+
Sbjct: 264 DAFFGDPTRPIGGHIVGHTATFRLYLRK 291


>gi|282897096|ref|ZP_06305098.1| hypothetical protein CRD_02017 [Raphidiopsis brookii D9]
 gi|281197748|gb|EFA72642.1| hypothetical protein CRD_02017 [Raphidiopsis brookii D9]
          Length = 72

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 25/39 (64%)

Query: 294 KSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           + GAW+S  G+ + QGR+N+  +L E  + AE I+  +R
Sbjct: 4   RKGAWYSHNGENISQGRDNAIKYLEEKSDFAEKIKEQVR 42


>gi|114569758|ref|YP_756438.1| DNA repair protein RadA [Maricaulis maris MCS10]
 gi|114340220|gb|ABI65500.1| DNA replication and repair protein RadA [Maricaulis maris MCS10]
          Length = 458

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 12/177 (6%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           G+ A + L   GS       + SG   LD   G GG   G  + + G    GK+TL L  
Sbjct: 53  GRAARLNLVDLGSESPEPARLQSGISELDRVCG-GGLVPGSAILVGGDPGIGKSTLLLQM 111

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL-EITDMLVRSGAV 146
           +AQ  ++     +V  E A+D +  R   + L +  +S     E +L +I D L ++   
Sbjct: 112 MAQIARSEARAIYVSGEEAIDQVRRRARRLGLADAPVSL--ASETSLNDILDGL-KAEKP 168

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           DI+VIDS+        +  D   + PG  A++ + A ++L     +S C ++ +  +
Sbjct: 169 DIVVIDSIQT------VWSDQLAAAPGTVAQVRACA-QELVRFAKKSNCTVILVGHV 218


>gi|329914624|ref|ZP_08276140.1| Circadian clock protein KaiC [Oxalobacteraceae bacterium IMCC9480]
 gi|327545094|gb|EGF30389.1| Circadian clock protein KaiC [Oxalobacteraceae bacterium IMCC9480]
          Length = 483

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 73/172 (42%), Gaps = 12/172 (6%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
           V+ +  +        +  G + +S+G   LD  +G GG P G    + GP  SGKT LA 
Sbjct: 229 VFPRAMVQSNNPNDIVITGDKRLSTGVPELDQMMG-GGLPAGYSCLLVGPSGSGKTVLAT 287

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             +A+  + G        E + + + + +L     NL++ + + G       D+     +
Sbjct: 288 QFLAEGIRNGEPGVVAAFEKSPNQLLSHQL-----NLMVERGEVGYINTRTLDL-----S 337

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           +D I+ D V  +T R   +  + +SL G +  L S        ++ R   +L
Sbjct: 338 IDEILHDLVTMIT-RMHAKRVVIDSLSGFELALASVFREDFREALYRMVAVL 388


>gi|150377661|ref|YP_001314256.1| non-specific serine/threonine protein kinase [Sinorhizobium medicae
           WSM419]
 gi|150032208|gb|ABR64323.1| Non-specific serine/threonine protein kinase [Sinorhizobium medicae
           WSM419]
          Length = 500

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 15/122 (12%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GTCAFV-DA 103
           ++VSSG   +D  LG GG  +G    + GP  +GK+T AL  +A +   G    AF+ D 
Sbjct: 249 KLVSSGIAEVDELLG-GGVERGSSTLVLGPAGTGKSTFALQFLAAAIGRGEKAAAFIFDE 307

Query: 104 EHALDSIYARKLGVDLK------NLLISQPDT-----GEQALEITDMLVRSGAVDIIVID 152
           E  L     + +G+DL+      NL I Q D      GE A  + + +  +GA   +++D
Sbjct: 308 ELGLLFTRMKTMGIDLEAMRASGNLHIEQVDAAELSPGEFAHRVRERVDSAGA-KTVLVD 366

Query: 153 SV 154
           S+
Sbjct: 367 SI 368


>gi|159469155|ref|XP_001692733.1| DNA recombination protein [Chlamydomonas reinhardtii]
 gi|45685351|gb|AAS75433.1| putative DNA repair protein RAD51 [Chlamydomonas reinhardtii]
 gi|158277986|gb|EDP03752.1| DNA recombination protein [Chlamydomonas reinhardtii]
          Length = 343

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 99/242 (40%), Gaps = 27/242 (11%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEG-IEVVS--SGSLGLDIALGIGGFPKGRIVEIY 73
           EA + ++Q V  K   M   +  ++ E   EV+S  +G   LD  L  GG   G I EIY
Sbjct: 71  EAKIDKMQLVAFKMVPMGFTTAAAVAEQRKEVISITTGCKELDTILE-GGIETGSITEIY 129

Query: 74  GPESSGKTTLALHTIAQSQKTG-------GTCAFVDAEHALD----SIYARKLGVD---- 118
           G    GKT L  HT+  + +         G   ++D E        S  A + G+     
Sbjct: 130 GEYRCGKTQLC-HTLCVTCQLPVEMGGGEGKAMYIDTEGTFRPQRLSQIAERYGLAPEDV 188

Query: 119 LKNLLISQPDTGEQAL----EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           L N+  ++    E  +    E   M+  S    ++V+DS  AL  R E  G    S+  +
Sbjct: 189 LNNVAYARAHNTEHQMRLLQEAAGMMADS-RFSLVVVDSATALY-RTEFNGRGELSIRQI 246

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT-GGNALKFYSSVRLDI 233
                 +AL+ +      +  +   +       G MF  P+T   GGN +   ++ RL +
Sbjct: 247 LLGRFLRALQNIADEYGVAVVVTNQVVANPDGAGAMFAGPQTKPIGGNIMAHATTTRLSV 306

Query: 234 RR 235
           R+
Sbjct: 307 RK 308


>gi|312210746|emb|CBX90832.1| hypothetical protein [Leptosphaeria maculans]
          Length = 417

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 23/98 (23%)

Query: 44  GIEVVSSGSLGLDIALGI---------GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           G   VS+G   LD  L +         GG+ +G++ EI+GP   GKT+  +     + + 
Sbjct: 33  GARAVSTGISQLDKVLSVPSLPGHDAPGGYLRGKVTEIFGPSGVGKTSFGIQAAVSALRE 92

Query: 95  GGTCAFVDAEHA------LDSI--------YARKLGVD 118
           G    +VDA  A      LDS+        ++R+ G D
Sbjct: 93  GQQVVWVDAACAPLVRERLDSVLESSKGDGHSREPGTD 130


>gi|255943873|ref|XP_002562704.1| Pc20g01450 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587439|emb|CAP85474.1| Pc20g01450 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 390

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 10/102 (9%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG  +G + EI+GP  +GKT+LAL+ IA +    G   ++D    L +    ++ ++L +
Sbjct: 60  GGILRGHVTEIFGPPGAGKTSLALN-IACNALRDGKVVWIDTGCPLPTPRLEEMSINLDD 118

Query: 122 LLISQPDTGEQALEITDMLVR------SGAVDIIVIDSVAAL 157
            +  +  T      +  +L R           ++V+DSV+ L
Sbjct: 119 FIYFRAHT---LAHLIALLARPPKGFPPSGTSLLVVDSVSNL 157


>gi|90419482|ref|ZP_01227392.1| putative DNA repair protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90336419|gb|EAS50160.1| putative DNA repair protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 462

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 23/152 (15%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LD A G GG  +G  + I G    GK+TL + T A   + G +  +V  E A+       
Sbjct: 78  LDRATG-GGIVRGSALLIGGDPGIGKSTLLMQTAAALSRRGHSVVYVSGEEAVAQ----- 131

Query: 115 LGVDLKNLLISQPDTGEQALEITDM------LVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
             V L+   ++  DT  Q +  T++      L  +   D+++IDS+  L        D+ 
Sbjct: 132 --VRLRAQRLNAADTDVQLMAETNVEDILATLAEARRPDLVIIDSIQTLW------SDLA 183

Query: 169 ESLPG--MQARLMSQALRKLTSSISRSKCILV 198
           ES PG   Q R+  QA+ +   + S +  ILV
Sbjct: 184 ESAPGTVTQVRVGVQAMIRFAKA-SGAAVILV 214


>gi|52550007|gb|AAU83856.1| recombinase [uncultured archaeon GZfos34G5]
          Length = 315

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 88/211 (41%), Gaps = 29/211 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-------QSQKTGGTCAF 100
           +++GS   D  LG GG     + E YG   SGKT +A H IA       ++    G+   
Sbjct: 79  LTTGSTSFDDLLG-GGLETQALTEFYGEFGSGKTQIA-HQIAVNVQLPPENGGLNGSVII 136

Query: 101 VDAEHAL------DSIYARKLGVD--LKNLLISQPDTGEQALEITDMLVR--------SG 144
           +D E+        D      L  D  LKN+ +++       + + D   R          
Sbjct: 137 IDTENTFRPERIKDMAEGASLDPDEILKNIHVARAYNSNHQILLVDKAERLAEELIDTEK 196

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            V ++++DS  A   R+E    +G      + + +++ L         +  +++  NQ++
Sbjct: 197 PVRLLIVDSATAHF-RSEY---VGRGTLADRQQKINKHLHDTLRFGDLNNAVVMITNQVQ 252

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           ++    FG P    GG+ +   ++ RL +R+
Sbjct: 253 VRPDAFFGDPTRPIGGHVVGHTATFRLYLRK 283


>gi|154414433|ref|XP_001580244.1| Phosphoribulokinase / Uridine kinase family protein [Trichomonas
           vaginalis G3]
 gi|121914459|gb|EAY19258.1| Phosphoribulokinase / Uridine kinase family protein [Trichomonas
           vaginalis G3]
          Length = 520

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           A  +  FP  R+V I GP SSGKTTL++    +  K G  C  +    A+D  Y  +
Sbjct: 231 AYILSQFPDKRVVGIAGPSSSGKTTLSIPLKDRLNKKGYDCIII----AIDDYYHHR 283


>gi|304315222|ref|YP_003850369.1| KaiC-related protein [Methanothermobacter marburgensis str.
          Marburg]
 gi|302588681|gb|ADL59056.1| KaiC-related protein [Methanothermobacter marburgensis str.
          Marburg]
          Length = 469

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 42 FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
          F  IE   +G  GLD+  G GGFP+GR   IYG   +GKT +A+
Sbjct: 3  FRSIEKSPTGIKGLDMVTG-GGFPQGRNTLIYGGPGTGKTFIAV 45


>gi|160943745|ref|ZP_02090976.1| hypothetical protein FAEPRAM212_01240 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444919|gb|EDP21922.1| hypothetical protein FAEPRAM212_01240 [Faecalibacterium prausnitzii
           M21/2]
          Length = 633

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 100/237 (42%), Gaps = 43/237 (18%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA-----------FVDAEHAL-DSIYA 112
           P G++  + G    GKTT AL  +A +  TGGT             +  AE  L D++  
Sbjct: 330 PFGKVTIVQGNPGEGKTTFALR-LAAACTTGGTLPGMKPLSPFQVIYQTAEDGLGDTVKP 388

Query: 113 R--KLGVDLKNLLISQPDTGEQALEITD-----MLVRSGAVDIIVIDSVAALTPRAEIEG 165
           R  +   DL  +L+   D  ++ L ++D      + ++GA  +I++D + A         
Sbjct: 389 RLIEAAADLDRVLVI--DEAKRELTLSDERIEKAITQNGA-RLIILDPIQAY-------- 437

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
            MGE     +A  +    R+L     R+ C ++ I  +        G      G  ++ F
Sbjct: 438 -MGEKTDMNRANEVRPMFRRLADVAERTGCAVILIGHLNKAA----GGQSAYRGLGSIDF 492

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVV-KNKMASPFKQVEFDIMYGEGISFFGE 281
            ++ R  +  +G +K + ++     RV V  K+ +A   K V F +    G S+ GE
Sbjct: 493 RAAAR-SVLLIGRVKREPNV-----RVIVHDKSSLAPEGKPVAFCLDPETGFSWIGE 543


>gi|156121351|ref|NP_001095824.1| DNA repair protein XRCC2 [Bos taurus]
 gi|154426030|gb|AAI51286.1| XRCC2 protein [Bos taurus]
 gi|296488218|gb|DAA30331.1| X-ray repair cross complementing protein 2 [Bos taurus]
          Length = 280

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 87/222 (39%), Gaps = 47/222 (21%)

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQS---QKTGG---TCAFVDAEHALD-----SIYARK 114
            G ++E +GPE +GKT +  H  A+    +  GG      F+D ++  D     ++   +
Sbjct: 40  HGDVLEFHGPEGTGKTEMLYHLTARCILPKSEGGLEVEVVFIDTDYHFDMLRLVTVLEHR 99

Query: 115 LGVD--------LKNLLISQPDTGEQAL----EITDMLVRSGAVDIIVIDSVAALTPRAE 162
           L           L  L +    +  Q L     +  ML R  +V ++++DS++A      
Sbjct: 100 LPQSSEEMVKHCLGRLFLVYCSSSTQLLLTLCSLETMLCRHPSVCLLILDSLSAFYWIDR 159

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE--TTTGG 220
           + G    +L     R  SQ L KL   ++  + +L    Q  M+      +PE   +   
Sbjct: 160 VNGGESVNLQESTLRKCSQLLEKL---VNEYRLVLFATTQSIMQKA---SNPEEGPSCAR 213

Query: 221 NALKFYSSVRLDIR-------------RVGSIKDKDSITGNQ 249
           N L   S V +D R             R+   K  DS  GNQ
Sbjct: 214 NCL---SDVDVDYRPYLCKAWQRVVKHRILFSKQNDSKAGNQ 252


>gi|150402395|ref|YP_001329689.1| DNA repair and recombination protein RadA [Methanococcus
           maripaludis C7]
 gi|166218762|sp|A6VGG2|RADA_METM7 RecName: Full=DNA repair and recombination protein radA
 gi|150033425|gb|ABR65538.1| DNA repair and recombination protein RadA [Methanococcus
           maripaludis C7]
          Length = 322

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 84/216 (38%), Gaps = 33/216 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA-------- 99
           +S+GS  LD  L  GG     + E  G   SGKT +   +    Q  G   A        
Sbjct: 80  LSTGSKELDTVLA-GGLESQSVTEFAGMYGSGKTQIMHQSCVNLQIAGKIYADLEGVVEE 138

Query: 100 --------FVDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQAL----EITDM 139
                   ++D E           A  LG+D    L N  +++    +  +    +I D+
Sbjct: 139 ELEHPKAVYIDTEGTFRPERVVQMAEGLGIDGQLVLDNTFVARAYNSDMQMLFAEKIEDL 198

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           +     + +++IDS+ + T R E  G     L   Q +L  + +  L        CI++ 
Sbjct: 199 IKGGNNIKLVIIDSLTS-TFRNEFTGR--GKLAERQQKL-GRHMATLNKLADLYNCIVLV 254

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
            NQ+  K    FG  E   GG+ +   ++ R  +R+
Sbjct: 255 TNQVAAKPDAFFGVAEQAIGGHVVGHAATFRFFLRK 290


>gi|307693716|ref|ZP_07635953.1| hypothetical protein RbacD_12019 [Ruminococcaceae bacterium D16]
          Length = 633

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 100/237 (42%), Gaps = 43/237 (18%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA-----------FVDAEHAL-DSIYA 112
           P G++  + G    GKTT AL  +A +  TGGT             +  AE  L D++  
Sbjct: 330 PFGKVTIVQGNPGEGKTTFALR-LAAACTTGGTLPGMKPLPPFQVIYQTAEDGLGDTVKP 388

Query: 113 R--KLGVDLKNLLISQPDTGEQALEITD-----MLVRSGAVDIIVIDSVAALTPRAEIEG 165
           R  +   DL  +L+   D  ++ L ++D      + ++GA  +I++D + A         
Sbjct: 389 RLIEAAADLDRVLVI--DEAKRELTLSDERIEKAITQNGA-RLIILDPIQAY-------- 437

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
            MGE     +A  +    R+L     R+ C ++ I  +        G      G  ++ F
Sbjct: 438 -MGEKTDMNRANEVRPMFRRLADVAERTGCAVILIGHLNKAA----GGQSAYRGLGSIDF 492

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVV-KNKMASPFKQVEFDIMYGEGISFFGE 281
            ++ R  +  +G +K + ++     RV V  K+ +A   K V F +    G S+ GE
Sbjct: 493 RAAAR-SVLLIGRVKREPNV-----RVIVHDKSSLAPEGKPVAFCLDPETGFSWIGE 543


>gi|169620824|ref|XP_001803823.1| hypothetical protein SNOG_13618 [Phaeosphaeria nodorum SN15]
 gi|111057945|gb|EAT79065.1| hypothetical protein SNOG_13618 [Phaeosphaeria nodorum SN15]
          Length = 411

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 5/62 (8%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G D+A   GG+ +G++ EI+GP  +GKT+  +   A + + G    ++D   A   +  R
Sbjct: 54  GHDVA---GGYMRGKVTEIFGPSGAGKTSFGIQAAANAIRQGQQVVWIDG--ACAPLVTR 108

Query: 114 KL 115
           +L
Sbjct: 109 RL 110


>gi|195108597|ref|XP_001998879.1| GI23388 [Drosophila mojavensis]
 gi|193915473|gb|EDW14340.1| GI23388 [Drosophila mojavensis]
          Length = 347

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 93/211 (44%), Gaps = 28/211 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GTCA 99
           ++++GS  LD  LG GG   G I EI+G    GKT +  HT+A       SQ  G G   
Sbjct: 106 MLTTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQIC-HTLAVTCQLPISQNGGEGKAL 163

Query: 100 FVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDI 148
           ++D E        S  A++  +D    L N+  ++    +Q  ++  M   ++      +
Sbjct: 164 YIDTEGTFRPERLSAIAQRYNMDEAAVLDNVACARAHNTDQQTQLVQMAAGMMFESRYAL 223

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI- 207
           I++DS  AL  R+E  G  GE L   Q  L    LR L          +V  NQ+  ++ 
Sbjct: 224 IIVDSAMALY-RSEYIG-RGE-LAARQNHL-GLFLRMLQRLADEFGVAVVITNQVTAQVD 279

Query: 208 --GVMF-GSPETTTGGNALKFYSSVRLDIRR 235
               MF    +   GG+ +   S+ RL +R+
Sbjct: 280 GGASMFVADAKKPIGGHIMAHASTTRLYLRK 310


>gi|229824613|ref|ZP_04450682.1| hypothetical protein GCWU000282_01960 [Catonella morbi ATCC 51271]
 gi|229785984|gb|EEP22098.1| hypothetical protein GCWU000282_01960 [Catonella morbi ATCC 51271]
          Length = 462

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 9/106 (8%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
            D  LG GG   G +V I G    GK+TL L    Q    G T  +V  E +L  I  R 
Sbjct: 83  FDRVLG-GGVVAGSLVLIGGDPGIGKSTLLLQVSIQLANLGQTVLYVSGEESLSQIKMRA 141

Query: 115 LGVDLKN---LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
             + LK+    L+S+ D    A E+  +     A DI++IDS+  +
Sbjct: 142 ERLSLKDSHFYLLSETDLAVIAGEVQRI-----APDILIIDSIQTM 182


>gi|284162485|ref|YP_003401108.1| ATPase [Archaeoglobus profundus DSM 5631]
 gi|284012482|gb|ADB58435.1| ATPase involved in biogenesis of flagella-like protein
           [Archaeoglobus profundus DSM 5631]
          Length = 244

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 73/177 (41%), Gaps = 31/177 (17%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           ++SSG+  +D  LG GG P G +  I G   +GK+ L           G   A+   E+ 
Sbjct: 16  ILSSGNSEIDKRLG-GGIPLGSLTLIEGENDTGKSVLCQQFTYGGLVQGHNIAYYTTENT 74

Query: 107 LDSIYAR--KLGVDLKNLLI---------------SQPDTGEQALEITDMLVRSGAVDII 149
           + S+ A+   L +D+ +                    PD   + L++    ++S   ++I
Sbjct: 75  IKSLLAQMESLSLDVSDFYAWGYLRIFPIHLEGVEWNPDQMRKVLQLLSDHIKSIRENVI 134

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           +IDS+   T  +  E D+ E L             +L +   R K IL+ ++Q   K
Sbjct: 135 IIDSLTMFTTYS-TEDDVLEFLT------------RLKNLCDRGKTILITLHQHAFK 178


>gi|295700868|ref|YP_003608761.1| circadian clock protein, KaiC [Burkholderia sp. CCGE1002]
 gi|295440081|gb|ADG19250.1| putative circadian clock protein, KaiC [Burkholderia sp. CCGE1002]
          Length = 504

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 3/78 (3%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
           G   +S+G+ G D  LG GG   G    I GP   GKTT  +  +  + + G  CA+   
Sbjct: 248 GTSPMSTGTPGFDALLG-GGLVPGTNSLIIGPSGVGKTTTVVSCLLAALERGDRCAYYVF 306

Query: 104 EHALDSIYAR--KLGVDL 119
           +  L ++ +R   LG+DL
Sbjct: 307 DETLSTLVSRCASLGMDL 324


>gi|240103793|ref|YP_002960102.1| RecA family AAA ATPase [Thermococcus gammatolerans EJ3]
 gi|239911347|gb|ACS34238.1| RecA family AAA ATPase [Thermococcus gammatolerans EJ3]
          Length = 237

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+G  GLD  LG GG   GR   + GP  +GKT LA H        G    +V  E   
Sbjct: 8   VSTGIAGLDEMLG-GGLIAGRAYLVEGPPGAGKTILATHFAMAGVDRGENALYVTLEEPA 66

Query: 108 DSI 110
           D +
Sbjct: 67  DQL 69


>gi|151941994|gb|EDN60350.1| radiation sensitive protein [Saccharomyces cerevisiae YJM789]
          Length = 460

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 23/134 (17%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
           G E  ++  + +D  LG G F  G I EI+G  S+GK+ L +      Q +      GG 
Sbjct: 96  GPECFTTADVAMDELLGGGIFTHG-ITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGK 154

Query: 98  CAFVDAE-----HALDSIYA-----RKLGVDLKNLL-ISQPDTGEQA----LEITDMLVR 142
           C ++  E       L+S+ +      KLG+   N+  +S  D   Q     +++  +L R
Sbjct: 155 CVYITTEGDLPTQRLESMLSSRPAYEKLGITQSNIFTVSCNDLINQEHIINVQLPILLER 214

Query: 143 -SGAVDIIVIDSVA 155
             G++ +++IDS++
Sbjct: 215 YKGSIKLVIIDSIS 228


>gi|255654111|ref|ZP_05399520.1| DNA repair protein RadA [Clostridium difficile QCD-23m63]
 gi|296449850|ref|ZP_06891617.1| DNA repair protein RadA [Clostridium difficile NAP08]
 gi|296877914|ref|ZP_06901934.1| DNA repair protein RadA [Clostridium difficile NAP07]
 gi|296261337|gb|EFH08165.1| DNA repair protein RadA [Clostridium difficile NAP08]
 gi|296431111|gb|EFH16938.1| DNA repair protein RadA [Clostridium difficile NAP07]
          Length = 457

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 7/105 (6%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YA 112
           LD  LG GG  KG +V + G    GK+TL +   +     G T  ++  E +   I   A
Sbjct: 77  LDRVLG-GGIVKGSLVLVGGDPGIGKSTLLIQVSSNVANLGKTVLYITGEESESQIKMRA 135

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           ++LG++ +NL I      E  L I +  +     ++I++DS+  +
Sbjct: 136 KRLGINSENLYI----FAENNLSIIESYLEVVNPELIILDSIQTV 176


>gi|229586868|ref|YP_002845369.1| DNA repair protein RadA [Rickettsia africae ESF-5]
 gi|228021918|gb|ACP53626.1| DNA repair protein RadA [Rickettsia africae ESF-5]
          Length = 444

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 4/101 (3%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG   G  + I G    GK+TL L   A +  +   C ++  E +LD I  R + ++L N
Sbjct: 77  GGLVLGSAILIGGDPGIGKSTLLLQLAASNFASKINCLYITGEESLDQIKLRAIRLNLTN 136

Query: 122 LLISQPDTGEQALE--ITDMLVRSGAVDIIVIDSVAALTPR 160
              +        LE  I  +      +D+IVIDS+  +T +
Sbjct: 137 Y--NTDILAATNLEDIIASIEANKNNIDLIVIDSIQTITTK 175


>gi|282600647|ref|ZP_05979308.2| conserved hypothetical protein [Subdoligranulum variabile DSM
           15176]
 gi|282571687|gb|EFB77222.1| conserved hypothetical protein [Subdoligranulum variabile DSM
           15176]
          Length = 325

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 90/230 (39%), Gaps = 26/230 (11%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQ-----------SQKTGGTCAFVDAEHAL-DSIY 111
            P G+I  I G    GKTT  L  IA+           S  T G   +  AE  L D+I 
Sbjct: 32  IPCGKITIIQGDPGEGKTTFILQLIARLTTGRPAWDGMSPMTPGNVIYQTAEDGLSDTIK 91

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
            R L        +   D  ++AL + D       ++  ++ + A L     I+G +G  +
Sbjct: 92  PRLLAAGAACDKVLMIDDSDRALTLED-----DRLEQAIVQTHARLVVLDPIQGYIGAGV 146

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
              +A  +   + ++     +  C +V I  M        G   +  G  ++ F ++ R 
Sbjct: 147 DMHRANEIRPLMHRIGVLAEKHHCAIVLIGHMNKN----SGEKSSYRGLGSIDFQAAAR- 201

Query: 232 DIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE 281
            +  VG IKD  ++      V   K+ +A   K + F +   +G  + GE
Sbjct: 202 SVLVVGRIKDDPTL----RVVCPTKSSLAPEGKAIAFRLDPEQGFQWAGE 247


>gi|322498849|emb|CBZ33922.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1562

 Score = 37.7 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 15/136 (11%)

Query: 49   SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA-- 106
            S  S GL ++ G GG   G +  + GP + GKTTL L  + Q         FV A+HA  
Sbjct: 1321 SGSSGGLTMSWGSGG---GDVCVVTGPNACGKTTL-LRILGQYFTLAQAGCFVPAQHAQL 1376

Query: 107  --LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
               D + A  L  +L +  I+      + +E++++   + A  + +ID +   T  A+  
Sbjct: 1377 FLADRLLAHMLCDELPS--ITHSSFRRELMELSELTHAATAESVALIDELGRSTTTAQ-- 1432

Query: 165  GDMGESLPGMQARLMS 180
               G SL    A L+S
Sbjct: 1433 ---GFSLAWATALLLS 1445


>gi|321399395|emb|CBZ08618.1| putative mis-match repair protein [Leishmania infantum JPCM5]
          Length = 1563

 Score = 37.7 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 15/136 (11%)

Query: 49   SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA-- 106
            S  S GL ++ G GG   G +  + GP + GKTTL L  + Q         FV A+HA  
Sbjct: 1322 SGSSGGLTMSWGSGG---GDVCVVTGPNACGKTTL-LRILGQYFTLAQAGCFVPAQHAQL 1377

Query: 107  --LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
               D + A  L  +L +  I+      + +E++++   + A  + +ID +   T  A+  
Sbjct: 1378 FLADRLLAHMLCDELPS--ITHSSFRRELMELSELTHAATAESVALIDELGRSTTTAQ-- 1433

Query: 165  GDMGESLPGMQARLMS 180
               G SL    A L+S
Sbjct: 1434 ---GFSLAWATALLLS 1446


>gi|255719844|ref|XP_002556202.1| KLTH0H07436p [Lachancea thermotolerans]
 gi|238942168|emb|CAR30340.1| KLTH0H07436p [Lachancea thermotolerans]
          Length = 400

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           SG   LD ALG  G+    I E++GP  + KT +A   +       GTC +VDA 
Sbjct: 20  SGVAALDDALG--GWHSRCIYELFGPPGTSKTRIAQSLVQSEMARDGTCLWVDAH 72


>gi|331082534|ref|ZP_08331659.1| DNA repair protein RadA [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330400512|gb|EGG80142.1| DNA repair protein RadA [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 457

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 7/105 (6%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YA 112
           LD  LG GG   G +V + G    GK+TL L    Q  K G    +V  E +L  I   A
Sbjct: 82  LDRVLG-GGIVPGSMVLVGGDPGIGKSTLLLQVCRQLTKNGHKVLYVSGEESLGQIKLRA 140

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           +++G   +NLL+      E  LE    ++     +++VIDS+  +
Sbjct: 141 KRIGEFNENLLL----LCETNLENIRSVIEKVKPEMVVIDSIQTM 181


>gi|218248663|ref|YP_002374034.1| circadian clock protein KaiC [Cyanothece sp. PCC 8801]
 gi|257061733|ref|YP_003139621.1| circadian clock protein KaiC [Cyanothece sp. PCC 8802]
 gi|218169141|gb|ACK67878.1| putative circadian clock protein, KaiC [Cyanothece sp. PCC 8801]
 gi|256591899|gb|ACV02786.1| putative circadian clock protein, KaiC [Cyanothece sp. PCC 8802]
          Length = 507

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E IE + +   G D  L +GG PKGR   + G   S KT  A   +A+  K G    FV 
Sbjct: 11  ESIEKLETAIPGFDF-LSVGGLPKGRATLVAGTAGSSKTVFACQFLAEGIKRGENGVFVT 69

Query: 103 AE 104
            E
Sbjct: 70  FE 71


>gi|168700349|ref|ZP_02732626.1| putative circadian clock protein, KaiC [Gemmata obscuriglobus UQM
           2246]
          Length = 506

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 8/87 (9%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV- 101
           + + +VS+G  GLD  L  GG PKG +  + G   +GKTTL L  + + ++ G    ++ 
Sbjct: 6   DSLPLVSTGVPGLDDVL-CGGLPKGHLYLVEGDAGAGKTTLGLQFLLEGKRRGEKTLWIS 64

Query: 102 --DAEHALDSIYARKL----GVDLKNL 122
             + E  L +  A       GV+++NL
Sbjct: 65  LSETESQLRATAASHRWDLSGVEIRNL 91


>gi|302894239|ref|XP_003046000.1| hypothetical protein NECHADRAFT_5950 [Nectria haematococca mpVI
           77-13-4]
 gi|256726927|gb|EEU40287.1| hypothetical protein NECHADRAFT_5950 [Nectria haematococca mpVI
           77-13-4]
          Length = 364

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 97/232 (41%), Gaps = 42/232 (18%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MDY   ++  D++    +   ++  V    A+ +LG   S       VS+G   LD AL 
Sbjct: 1   MDYHA-IHGHDRASFDTSGAHRLPTVSASQALDELGGDASNH-----VSTGLEDLDHALA 54

Query: 61  ------------IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
                        GG  +G++ EI+GP  +GKT L L  + ++ K     + V+A H ++
Sbjct: 55  GTVSVDSQDSTPKGGVHRGQVTEIWGPPGTGKTALGLKAVIKTIKDDQGDSDVEA-HDVE 113

Query: 109 SIYARKLGVDLKNL-----LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT----P 159
               R L      L     LIS+P             V      ++VI S++AL     P
Sbjct: 114 GDAGRFLHYSCLTLPHFVALISRPTAK----------VIPANTSLVVISSLSALVNSALP 163

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR----SKCILVFINQMRMKI 207
           ++     + +S  G+      QAL+ + +++ +      C +V ++Q   K+
Sbjct: 164 KSHDGKAISKSAKGIPFTKRLQALQSIMNALHKLAATRNCAVVILSQCATKM 215


>gi|163848809|ref|YP_001636853.1| circadian clock protein KaiC [Chloroflexus aurantiacus J-10-fl]
 gi|222526762|ref|YP_002571233.1| circadian clock protein KaiC [Chloroflexus sp. Y-400-fl]
 gi|163670098|gb|ABY36464.1| circadian clock protein KaiC [Chloroflexus aurantiacus J-10-fl]
 gi|222450641|gb|ACM54907.1| putative circadian clock protein, KaiC [Chloroflexus sp. Y-400-fl]
          Length = 511

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE + +G  G D  +  GG PKGR   + G   S KT  A   +A   K G    FV  E
Sbjct: 6   IERLPTGITGFD-HIANGGLPKGRTTLVSGTAGSAKTVFAAQFLAAGIKRGEPGVFVTFE 64

Query: 105 HALDSIYARKLG 116
              D++    LG
Sbjct: 65  ETPDALRRNMLG 76


>gi|51473728|ref|YP_067485.1| DNA repair protein RadA [Rickettsia typhi str. Wilmington]
 gi|81390047|sp|Q68WI9|RADA_RICTY RecName: Full=DNA repair protein RadA homolog; AltName: Full=DNA
           repair protein Sms homolog
 gi|51460040|gb|AAU04003.1| DNA repair protein RadA [Rickettsia typhi str. Wilmington]
          Length = 445

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 7/109 (6%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           L+  LG GG   G  + I G    GK+TL L   A + ++   C ++  E +LD I  R 
Sbjct: 72  LNRVLG-GGLVLGSAILIGGEPGIGKSTLLLQLTASNFESKMRCLYITGEESLDQIKLRA 130

Query: 115 LGVDLKNL---LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           + +++ N    +++  +  +    I D    +  +D++VIDS+  +T +
Sbjct: 131 IRLNITNYNTAILAATNLEDIIASIDD---NNNNIDLVVIDSIQTITTK 176


>gi|315605186|ref|ZP_07880233.1| DNA repair protein RadA [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313107|gb|EFU61177.1| DNA repair protein RadA [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 461

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 13/127 (10%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-----GTCAFVDA 103
           S+G   LD  LG GG   G ++ + G    GK+TL L   A++ +T      G   +V  
Sbjct: 69  STGVGELDRVLG-GGIVPGAVILLAGEPGVGKSTLLLDVAAKAARTARSGGLGPVLYVTG 127

Query: 104 EHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           E +   +  R  ++G    NLLI+     E  L +    VR  A  ++++DSV  ++  A
Sbjct: 128 EESAAQVRGRAERIGALEPNLLIAD----ETELGVVLGHVRQSAPSLLIVDSVQTIS-SA 182

Query: 162 EIEGDMG 168
           ++EG  G
Sbjct: 183 QVEGGAG 189


>gi|258591295|emb|CBE67592.1| DNA repair protein (DNA repair protein) [NC10 bacterium 'Dutch
           sediment']
          Length = 459

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 7/113 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+G   LD  LG GG   G  V + G    GK+TL L    Q  +  G   +V  E +L
Sbjct: 71  VSTGLAELDRVLG-GGIVPGSFVLLSGDPGIGKSTLLLQASMQVAQKDGVVLYVSGEESL 129

Query: 108 DSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
               +R  +LG     LL+    + +  LE TD +  +    I+VIDS+  +T
Sbjct: 130 QQTRSRASRLGPLSDRLLLLAETSLQMILEQTDRIRPT----ILVIDSIQTIT 178


>gi|237800708|ref|ZP_04589169.1| circadian clock protein kaiC [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331023567|gb|EGI03624.1| circadian clock protein kaiC [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 494

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 13/119 (10%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VSSG   LD  LG GG   G    I GP  +GK+ ++L    Q+   G        +  L
Sbjct: 248 VSSGIAELDKLLG-GGIESGSSTLILGPSGTGKSLISLVFAVQAVARGERVGLFIFDEEL 306

Query: 108 DSIYAR--KLGVDLK------NLLISQPDTGEQALEITDMLVRSGA----VDIIVIDSV 154
             ++ R  KLG+DL+      NL+I Q D  E +       VRS      +  ++IDS+
Sbjct: 307 GLLFERMLKLGIDLRALQDTGNLVIEQVDAAELSPGEFAHRVRSAVDSKHIKTVIIDSI 365


>gi|67606014|ref|XP_666724.1| meiotic recombination protein DMC1-like protein [Cryptosporidium
           hominis TU502]
 gi|54657771|gb|EAL36494.1| meiotic recombination protein DMC1-like protein [Cryptosporidium
           hominis]
          Length = 342

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 90/215 (41%), Gaps = 39/215 (18%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS   D  L +GGF    I EI+G    GKT +  HT+  + +         G   F
Sbjct: 105 ITTGSEQFDKML-MGGFESMCITEIFGENRCGKTQIC-HTLCVAAQLPLEMNGGNGKVCF 162

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGA------- 145
           +D E           A + GV     L N++ ++  T E      + L+ + A       
Sbjct: 163 IDTEGTFRPERIVKIAERFGVQGDVALDNIMYARAYTHEH----LNQLISAAAGKMIEEK 218

Query: 146 VDIIVIDSVAALTPRAEI--EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ- 202
             ++++DS+ AL  R E    G++ E     + +++++ L KL     +    +V  N  
Sbjct: 219 FALLIVDSIIALF-RTEFSGRGELAE-----RQQILNKTLSKLNKLADQFNIAIVMTNHV 272

Query: 203 MRMKIGVMFGSPETT--TGGNALKFYSSVRLDIRR 235
           M    G M   P      GG+ +   S VRL +R+
Sbjct: 273 MADPAGGMSFMPNVAKPVGGHVIGHASHVRLSLRK 307


>gi|66362764|ref|XP_628348.1| meiotic recombination protein DMC1-like protein [Cryptosporidium
           parvum Iowa II]
 gi|46229395|gb|EAK90213.1| meiotic recombination protein DMC1-like protein [Cryptosporidium
           parvum Iowa II]
          Length = 342

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 90/215 (41%), Gaps = 39/215 (18%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++GS   D  L +GGF    I EI+G    GKT +  HT+  + +         G   F
Sbjct: 105 ITTGSEQFDKML-MGGFESMCITEIFGENRCGKTQIC-HTLCVAAQLPLEMNGGNGKVCF 162

Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGA------- 145
           +D E           A + GV     L N++ ++  T E      + L+ + A       
Sbjct: 163 IDTEGTFRPERIVKIAERFGVQGDVALDNIMYARAYTHEH----LNQLISAAAGKMIEEK 218

Query: 146 VDIIVIDSVAALTPRAEI--EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ- 202
             ++++DS+ AL  R E    G++ E     + +++++ L KL     +    +V  N  
Sbjct: 219 FALLIVDSIIALF-RTEFSGRGELAE-----RQQILNKTLSKLNKLADQFNIAIVMTNHV 272

Query: 203 MRMKIGVMFGSPETT--TGGNALKFYSSVRLDIRR 235
           M    G M   P      GG+ +   S VRL +R+
Sbjct: 273 MADPAGGMSFMPNVAKPVGGHVIGHASHVRLSLRK 307


>gi|289523258|ref|ZP_06440112.1| DNA repair protein RadA [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503801|gb|EFD24965.1| DNA repair protein RadA [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 444

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 18/148 (12%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113
           LD  LG GG+ +G +V + G    GK+TL L +     + G    +V  E +   + +R 
Sbjct: 71  LDRVLG-GGWVEGAVVLLSGEPGVGKSTLLLQSAIAMAEEGKKVLYVSGEESASQVASRA 129

Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            +LG +  +L +   D  ++AL   +       V+ + +DSV  +  + E         P
Sbjct: 130 KRLGAEDGSLFLLCTDDIDEALSAAE------DVEFLFVDSVQTMRDKNE------SGWP 177

Query: 173 G--MQARLMSQALRKLTSSISRSKCILV 198
           G  +Q RL +Q   +L  S +   C+LV
Sbjct: 178 GSPLQVRLTAQRCIELAKSRA-IPCVLV 204


>gi|256003492|ref|ZP_05428482.1| DNA repair protein RadA [Clostridium thermocellum DSM 2360]
 gi|255992516|gb|EEU02608.1| DNA repair protein RadA [Clostridium thermocellum DSM 2360]
 gi|316941439|gb|ADU75473.1| DNA repair protein RadA [Clostridium thermocellum DSM 1313]
          Length = 454

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 16/141 (11%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113
           +D  LG GG  KG ++ + G    GK+TL L  I    KT     +V  E ++  I  R 
Sbjct: 76  MDRVLG-GGIVKGSLILVGGDPGIGKSTLLLQ-ICDKIKTNAKILYVSGEESIKQIKLRA 133

Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            +L V   NLL+      E   ++   L  +   D+IVIDS+  +        D   S P
Sbjct: 134 DRLNVRNPNLLM----LSETNFKVIQALSETERPDLIVIDSIQTMF------NDELPSAP 183

Query: 173 G--MQARLMSQALRKLTSSIS 191
           G   Q R ++  L ++  +++
Sbjct: 184 GSVSQVREITSGLMRIAKTLN 204


>gi|83774236|dbj|BAE64361.1| unnamed protein product [Aspergillus oryzae]
          Length = 341

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 20/125 (16%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQK----TGGTCAF 100
           +S+GS   D  LG GGF    I E++G    GKT L+ HT   +AQ  K      G  A+
Sbjct: 101 ISTGSKQFDAILG-GGFQSMSISEVFGEFRCGKTQLS-HTMSVVAQLPKEMGGADGKVAY 158

Query: 101 VDAEHALD----SIYARKLGVDL----KNLLISQPDTGEQALEITDMLVRS---GAVDII 149
           +D E        +  A + GVD     +N+  ++    E  LE+ + L +    G   ++
Sbjct: 159 IDTEGTFRPERIAQIAERFGVDADSARENIAYARALNSEHQLELLNTLSKEFTGGEYRLL 218

Query: 150 VIDSV 154
           +IDS+
Sbjct: 219 IIDSI 223


>gi|46108550|ref|XP_381333.1| hypothetical protein FG01157.1 [Gibberella zeae PH-1]
          Length = 348

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 52/244 (21%), Positives = 103/244 (42%), Gaps = 35/244 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G + E++G   +GK+ +  HT+A + +         G C +
Sbjct: 103 ITTGSKNLDTLLA-GGIETGSVTELFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCMY 160

Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDII 149
           +D E     +     A + G+     L N+  ++    +  L++ +    ++      ++
Sbjct: 161 IDTEGTFRPVRLLGVANRFGLSGEEVLDNVAYARAYNSDHQLQLLNQAAAMMCETRFSLL 220

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           ++DS  +L  R +  G  GE L   Q  L ++ +R L          +V  NQ+  ++  
Sbjct: 221 IVDSATSLY-RTDFCG-RGE-LSNRQTHL-AKFMRTLQRLADEFGIAVVITNQVVAQVDG 276

Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               MF   P+   GGN +   S+ R+ ++      R+  I D   +  + T   + +  
Sbjct: 277 GPSAMFNPDPKKPIGGNIIAHASTTRISLKKGRAETRIAKIYDSPCLPESDTLFAIGEEG 336

Query: 259 MASP 262
           +  P
Sbjct: 337 IGDP 340


>gi|327401459|ref|YP_004342298.1| putative circadian clock protein KaiC [Archaeoglobus veneficus
           SNP6]
 gi|327316967|gb|AEA47583.1| putative circadian clock protein, KaiC [Archaeoglobus veneficus
           SNP6]
          Length = 230

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G  GLD  L  GG   GR   + G   SGKT L++  + +  K G  C +V  E  ++
Sbjct: 4   STGVEGLDEMLN-GGLIPGRTYLVKGGPGSGKTILSMLFLVEGAKRGENCIYVTLEEPIN 62

Query: 109 SIY--ARKLGVDLKNL 122
            +    + +GVD+ + 
Sbjct: 63  EVKEDMKNVGVDIDSF 78


>gi|125974290|ref|YP_001038200.1| DNA repair protein RadA [Clostridium thermocellum ATCC 27405]
 gi|125714515|gb|ABN53007.1| DNA repair protein RadA [Clostridium thermocellum ATCC 27405]
          Length = 454

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 16/141 (11%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113
           +D  LG GG  KG ++ + G    GK+TL L  I    KT     +V  E ++  I  R 
Sbjct: 76  MDRVLG-GGIVKGSLILVGGDPGIGKSTLLLQ-ICDKIKTNAKILYVSGEESIKQIKLRA 133

Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            +L V   NLL+      E   ++   L  +   D+IVIDS+  +        D   S P
Sbjct: 134 DRLNVRNPNLLM----LSETNFKVIQALSETERPDLIVIDSIQTMF------NDELPSAP 183

Query: 173 G--MQARLMSQALRKLTSSIS 191
           G   Q R ++  L ++  +++
Sbjct: 184 GSVSQVREITSGLMRIAKTLN 204


>gi|147744585|sp|Q9ZD04|RADA_RICPR RecName: Full=DNA repair protein RadA homolog; AltName: Full=DNA
           repair protein Sms homolog
 gi|292572161|gb|ADE30076.1| DNA repair protein RadA [Rickettsia prowazekii Rp22]
          Length = 445

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 7/109 (6%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           L+  LG GG   G  + I G    GK+TL L   A + ++   C ++  E +LD I  R 
Sbjct: 72  LNRVLG-GGLVLGSAILIGGEPGIGKSTLLLQLTASNFESEMRCLYITGEESLDQIKLRA 130

Query: 115 LGVDLKNL---LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           + +++ N    +++  +  +    I D    +  +D++VIDS+  +T +
Sbjct: 131 IRLNITNYNTAILAATNLEDIIASIDD---NNNNIDLVVIDSIQTITTK 176


>gi|146340913|ref|YP_001205961.1| circadian clock protein KaiC [Bradyrhizobium sp. ORS278]
 gi|146193719|emb|CAL77736.1| Circadian clock protein kinase KaiC [Bradyrhizobium sp. ORS278]
          Length = 509

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 23/138 (16%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL-HTIAQSQKTGGTCAFVDA 103
           +E + +G  G D  +  GG P  R   + G   SGKT LAL + I   + TG     V  
Sbjct: 9   LEKLRTGIAGFD-QIANGGLPLNRTTLVAGTAGSGKTVLALQYLITGVRTTGEHGVCVTF 67

Query: 104 EHALDSIYA--RKLGVDLKNLLISQ--------PDTGEQALEI-----------TDMLVR 142
           E A + +    R  G +L+N++  +        P+ GE+ +E             +  VR
Sbjct: 68  EEAPEDLIRNIRSFGWELENMIARRQVAIVDVTPEDGEETIEAGTFDFSALLARIEAAVR 127

Query: 143 SGAVDIIVIDSVAALTPR 160
           +     +++DS+ AL P+
Sbjct: 128 NVNAKRLIMDSIGALFPQ 145


>gi|15604403|ref|NP_220919.1| DNA repair protein RadA [Rickettsia prowazekii str. Madrid E]
 gi|3861095|emb|CAA14995.1| DNA REPAIR PROTEIN RADA HOMOLOG (radA) [Rickettsia prowazekii]
          Length = 448

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 7/109 (6%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           L+  LG GG   G  + I G    GK+TL L   A + ++   C ++  E +LD I  R 
Sbjct: 75  LNRVLG-GGLVLGSAILIGGEPGIGKSTLLLQLTASNFESEMRCLYITGEESLDQIKLRA 133

Query: 115 LGVDLKNL---LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           + +++ N    +++  +  +    I D    +  +D++VIDS+  +T +
Sbjct: 134 IRLNITNYNTAILAATNLEDIIASIDD---NNNNIDLVVIDSIQTITTK 179


>gi|121998521|ref|YP_001003308.1| hypothetical protein Hhal_1742 [Halorhodospira halophila SL1]
 gi|121589926|gb|ABM62506.1| SOS cell division inhibitor SulA [Halorhodospira halophila SL1]
          Length = 278

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 1/105 (0%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESS-GKTTLALHTIAQSQKTGGTCAFVDAEH 105
            + +G   LD AL  GG+P G + EI+  + + G+  L L ++A   +     A V   +
Sbjct: 29  ALGTGYPELDAALPDGGWPLGTVTEIFHQQPAIGELQLILPSLAALSRRRQWLALVAPPY 88

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
              +      GVDL  +L+  P   E  L   +  +RSG    +V
Sbjct: 89  IPYAPGLAHAGVDLSRVLLIHPRAHEDHLWAIEQALRSGTCGAVV 133


>gi|119504400|ref|ZP_01626480.1| hypothetical protein MGP2080_00970 [marine gamma proteobacterium
           HTCC2080]
 gi|119459908|gb|EAW41003.1| hypothetical protein MGP2080_00970 [marine gamma proteobacterium
           HTCC2080]
          Length = 247

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 1/111 (0%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT-LALHTIAQSQKTGGTC 98
           S   G++V+ +G   LD  + + G+P    VE+   +S   +  L L T+A   +     
Sbjct: 33  SDLHGVDVLPTGFNALDAQIAMAGWPLRGGVEVLSKDSGTDSMGLFLPTMAALSEQRRWQ 92

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           AF+   HA  +      GV  + +L+  P   E+ L  T+  +RS    ++
Sbjct: 93  AFIAPPHAPYAPLLAARGVATEQVLMVHPKDREELLWATEQAIRSTTCSVV 143


>gi|73670560|ref|YP_306575.1| hypothetical protein Mbar_A3108 [Methanosarcina barkeri str.
           Fusaro]
 gi|72397722|gb|AAZ71995.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 235

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 3/77 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VS+G   LD  L  GG+P  ++  I G   SGKT   +H + ++   G  C  +  E
Sbjct: 1   MERVSTGIEDLDRKLS-GGYPANKVTLITGIAGSGKTIFGIHFVYKNCLEGRKCMIIATE 59

Query: 105 HALDSIY--ARKLGVDL 119
            + + I   A  LG DL
Sbjct: 60  ESPEDILYQASMLGRDL 76


>gi|225717836|gb|ACO14764.1| DNA repair protein RAD51 homolog 1 [Caligus clemensi]
          Length = 346

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 92/219 (42%), Gaps = 47/219 (21%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           +++GS  LD  L  GG   G I E++G   +GK+ L  HT+A + +         G C +
Sbjct: 109 ITTGSKELDKLLK-GGIETGSITELFGEFRTGKSQLC-HTLAVTCQLPIDHGGAEGKCLY 166

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E                      LD++ YAR    D ++ L+         ++ + M
Sbjct: 167 IDTEGTFRPERLLAVAERYSLSGNDVLDNVAYARAYNSDHQSQLL---------IQASAM 217

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           +  S    +I++DS  AL  R +  G    S   M    +++ LR L          +V 
Sbjct: 218 MAES-RYALIIVDSSTALY-RTDYSGRGELSTRQMH---LARFLRMLLRLADEFGVGVVI 272

Query: 200 INQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
            NQ+  ++    MF + P+   GGN +   S+ RL  R+
Sbjct: 273 TNQVVAQVDGAAMFAADPKKPIGGNIMAHASTTRLYFRK 311


>gi|300176345|emb|CBK23656.2| unnamed protein product [Blastocystis hominis]
          Length = 316

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 93/215 (43%), Gaps = 30/215 (13%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA--LHTIAQ---SQKTG-G 96
           E I  +S+G   LD  LG GG   G I E+YG   +GKT +   L  I Q   SQ  G G
Sbjct: 75  EDIVHISTGCKELDRILG-GGMETGSITELYGEFRTGKTQMCHTLCVICQLPISQGGGEG 133

Query: 97  TCAFVDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV-- 146
              ++D E+          +++ G++    L N+  ++    E   +   +L+++ A+  
Sbjct: 134 KALYIDTENTFRPERLIQISKRFGLNPDDVLDNVTYARAYNSEHQQQ---LLIQAAALMA 190

Query: 147 ----DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                ++++DS  AL  R +  G  GE     Q+  ++Q LR L          +V  NQ
Sbjct: 191 ESRYALVIVDSATALF-RTDYTG-RGELSTRQQS--LAQFLRGLQKLADEFGVAVVITNQ 246

Query: 203 MRMKI--GVMFGSPETTTGGNALKFYSSVRLDIRR 235
           +      GV    P    GGN +   S  RL  ++
Sbjct: 247 VVANPDSGVFAKDPLKPIGGNIIAHASQTRLRFKK 281


>gi|302496969|ref|XP_003010485.1| hypothetical protein ARB_03186 [Arthroderma benhamiae CBS 112371]
 gi|291174028|gb|EFE29845.1| hypothetical protein ARB_03186 [Arthroderma benhamiae CBS 112371]
          Length = 257

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 96/214 (44%), Gaps = 33/214 (15%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  L  GG   G I E++G   +GK+ +  HT+A + +         G C 
Sbjct: 10  CITTGSKQLDTLLA-GGIETGSITELFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCL 67

Query: 100 FVDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDI 148
           ++D E     +     A++ G+     L N+  ++    +  L++ +    ++      +
Sbjct: 68  YIDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSL 127

Query: 149 IVIDSVAALTPRAEIEGDMGE--SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           +++DS  +L  R +  G  GE  S     AR M + L++L      +   +V  NQ+  +
Sbjct: 128 LIVDSATSLY-RTDFSG-RGELSSRQNHLARFM-RTLQRLADEFGVA---VVITNQVVAQ 181

Query: 207 I----GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           +      MF   P+   GGN +   S+ RL +++
Sbjct: 182 VDGGPSAMFNPDPKKPIGGNIIAHASTTRLSLKK 215


>gi|241950183|ref|XP_002417814.1| DNA double-strand-break repair and homologue-pairing meiosis
           protein (DMC1/RAD51 homologue), putative [Candida
           dubliniensis CD36]
 gi|223641152|emb|CAX45529.1| DNA double-strand-break repair and homologue-pairing meiosis
           protein (DMC1/RAD51 homologue), putative [Candida
           dubliniensis CD36]
          Length = 324

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 98/211 (46%), Gaps = 30/211 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS   D  LG GG     I E++G    GKT L  HT+  + +         G  A+
Sbjct: 87  ITTGSRQFDEILG-GGIQSMSITEVFGEFRCGKTQLC-HTLCIAAQLPTDMGGGEGRVAY 144

Query: 101 VDAEHAL--DSI--YARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVDII 149
           +D E     D I   A +  VD    L+N+  ++    E  +E+ + L   +  G   ++
Sbjct: 145 IDTEGTFRPDRIRSIAERYDVDADTCLENISYARALNSEHQIELVEQLGNELAEGTFRLL 204

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMKIG 208
           ++DS+ A   R +  G  GE L   Q +L +Q L  LT  ++    I VF+ NQ++   G
Sbjct: 205 IVDSIMACF-RVDFSG-RGE-LNERQQKL-NQHLSNLT-RVAEDYNIAVFLTNQVQSDPG 259

Query: 209 --VMFGSPE--TTTGGNALKFYSSVRLDIRR 235
              +F + +     GG+ L   S+ R+ +R+
Sbjct: 260 ASALFAAADGRKPVGGHVLAHASATRILLRK 290


>gi|67459258|ref|YP_246882.1| DNA repair protein RadA [Rickettsia felis URRWXCal2]
 gi|75536310|sp|Q4UL56|RADA_RICFE RecName: Full=DNA repair protein RadA homolog; AltName: Full=DNA
           repair protein Sms homolog
 gi|67004791|gb|AAY61717.1| DNA repair protein RadA [Rickettsia felis URRWXCal2]
          Length = 446

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 4/101 (3%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG   G  + I G    GK+TL L   A +  +   C ++  E +LD I  R + ++L N
Sbjct: 79  GGLVLGSAILIGGDPGIGKSTLLLQLAASNFASKMNCLYITGEESLDQIKLRAIRLNLTN 138

Query: 122 LLISQPDTGEQALE--ITDMLVRSGAVDIIVIDSVAALTPR 160
              +        LE  I  +      +D++VIDS+  +T +
Sbjct: 139 Y--NTDILAATNLEDIIASIEANKNNIDLVVIDSIQTITTK 177


>gi|328958767|ref|YP_004376153.1| DNA repair protein RadA [Carnobacterium sp. 17-4]
 gi|328675091|gb|AEB31137.1| DNA repair protein RadA [Carnobacterium sp. 17-4]
          Length = 456

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 8/116 (6%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113
           L+  LG GG   G +V I G    GK+TL L   AQ    GG   +V  E +   I  R 
Sbjct: 79  LNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSAQLNLAGGKVLYVSGEESSSQIKMRA 137

Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +LGV   +  I  P+T   A+  T   +     D ++IDS+  +  +A+I G +G
Sbjct: 138 NRLGVKGADFYI-YPETDMGAIRQT---IEDLKPDYVIIDSIQTMN-QADITGAIG 188


>gi|326426805|gb|EGD72375.1| hypothetical protein PTSG_00395 [Salpingoeca sp. ATCC 50818]
          Length = 335

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 96/220 (43%), Gaps = 38/220 (17%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH---TIAQSQKTGGTCA---FV 101
           +S G  GLD    +G    G ++++ G  S+GKT LAL     + Q  + GG  A   F+
Sbjct: 79  ISWGDAGLD---RVGPIRTGHLIDLCGESSAGKTQLALQLCLAVQQPPECGGISARAVFI 135

Query: 102 DAE--------HALDSIYARK------LGVDLKNLLISQPDTGEQAL----EITDMLVRS 143
           + E        H L    A++      + V   N+  ++ +T ++      E    L+ S
Sbjct: 136 NTEARFPMSRWHQLAKHCAQRYPSLASIAVS-DNVFTNRINTADEFWMFVHEALPSLLSS 194

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             V ++VIDS+AAL  RA+   D  ES    +A ++    R+L       K  +V INQ+
Sbjct: 195 SGVRLVVIDSIAALF-RADFALD--ES--AARAHVLFDIGRQLKQLAHAHKTAIVCINQV 249

Query: 204 RMKIG---VMFGSPETTTGGNALKFYSSV--RLDIRRVGS 238
              +    +   +P        L + S +  R  +RR+ S
Sbjct: 250 SAHVPEEVLPSFAPSRVIPALGLAWSSCINARYFVRRITS 289


>gi|290462499|gb|ADD24297.1| DNA repair protein RAD51 homolog 1 [Lepeophtheirus salmonis]
          Length = 350

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 93/219 (42%), Gaps = 47/219 (21%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           +++GS  LD  L  GG   G I E++G   +GK+ L  HT+A + +         G C +
Sbjct: 113 ITTGSKELDKLLK-GGIETGSITELFGEFRTGKSQLC-HTLAVTCQLPIDHGGAEGKCLY 170

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E                      LD++ YAR    D ++ L+         ++ + M
Sbjct: 171 IDTEGTFRPERLLAVAERYNLSGNDVLDNVAYARAYNSDHQSQLL---------IQASAM 221

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           +  S    +I++DS  AL  R +  G    S   M    +++ LR L          +V 
Sbjct: 222 MAES-RYALIIVDSSTALY-RTDYSGRGELSTRQMH---LARFLRMLLRLADEFGVGVVI 276

Query: 200 INQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
            NQ+  ++    MF + P+   GGN +   S+ RL +R+
Sbjct: 277 TNQVVAQVDGAAMFSADPKKPIGGNIMAHASTTRLYLRK 315


>gi|294948363|ref|XP_002785713.1| meiotic recombination protein DMC1, putative [Perkinsus marinus
           ATCC 50983]
 gi|239899761|gb|EER17509.1| meiotic recombination protein DMC1, putative [Perkinsus marinus
           ATCC 50983]
          Length = 259

 Score = 37.7 bits (86), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 61/129 (47%), Gaps = 23/129 (17%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GTCAFVDAE 104
           + VS+G   LD  L  GG P  ++VE+YGP  SGKT + L +IA +   G G   + D+E
Sbjct: 12  QYVSTGMPSLDAFLR-GGLPVAQLVELYGPAGSGKTQV-LMSIAVAVLAGEGRVFWFDSE 69

Query: 105 HALD-----------SIYARKLGVDLKNLLISQPD------TGEQALEITDMLVRSGAVD 147
             L            S +A   G+ L  + I + D       G +AL+        G   
Sbjct: 70  RTLHPERFQSLCERRSPHAPIEGM-LSRMAIKECDDLLDLIRGVEALKTIPTC--EGVPC 126

Query: 148 IIVIDSVAA 156
           ++VIDSVAA
Sbjct: 127 LVVIDSVAA 135


>gi|225570460|ref|ZP_03779485.1| hypothetical protein CLOHYLEM_06561 [Clostridium hylemonae DSM
           15053]
 gi|225160657|gb|EEG73276.1| hypothetical protein CLOHYLEM_06561 [Clostridium hylemonae DSM
           15053]
          Length = 555

 Score = 37.7 bits (86), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 27/131 (20%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA--------FV------ 101
           +IA  I G P+ + V I GP SSGKTT + H ++   +  G           FV      
Sbjct: 279 EIASEIAGRPEIKFVLIAGPSSSGKTTFS-HRLSIQLRANGLVPHPIAVDNYFVERENNP 337

Query: 102 -DAEHALDSIYARKLGVDLKNLLISQPDTGEQAL-----------EITDMLVRSGAVDII 149
            DA+   D      + V+L N  + Q   G++ +           E T+   + GA D++
Sbjct: 338 KDADGNYDFECLEAVDVELFNRQLRQLTEGKEVIIPNFNFVTGHKEYTNKPKKLGANDVL 397

Query: 150 VIDSVAALTPR 160
           VI+ +  L P+
Sbjct: 398 VIEGIHCLNPK 408


>gi|297566582|ref|YP_003685554.1| DNA repair protein RadA [Meiothermus silvanus DSM 9946]
 gi|296851031|gb|ADH64046.1| DNA repair protein RadA [Meiothermus silvanus DSM 9946]
          Length = 434

 Score = 37.7 bits (86), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 10/138 (7%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           +I    G G I++L    +  E  E  SSG   LD  LG GGF KG ++ + G    GK+
Sbjct: 48  RIPAYEGGGRIVRLRDASANLE--ERFSSGLGELDRVLG-GGFVKGEVLLVGGEPGVGKS 104

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDM 139
           T+ L    Q  + G    ++  E +   I   A++LGVD    L+      E  LE    
Sbjct: 105 TILLQVAHQMLEQGKRVLYLAGEESPGQIRLRAQRLGVDESLELLR-----ETHLEAILN 159

Query: 140 LVRSGAVDIIVIDSVAAL 157
           L+     D +++DSV  L
Sbjct: 160 LLEVERPDFLIVDSVQTL 177


>gi|148980527|ref|ZP_01816100.1| hypothetical protein VSWAT3_23279 [Vibrionales bacterium SWAT-3]
 gi|145961180|gb|EDK26495.1| hypothetical protein VSWAT3_23279 [Vibrionales bacterium SWAT-3]
          Length = 233

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 7/135 (5%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GGFP   ++E+   +  G+  L    +AQ Q +     F++    + + +    GV+L N
Sbjct: 40  GGFPTHGVIEVESQQGIGELRLLTPYLAQ-QNSQKLAIFINPPGKICAEFFSSQGVELDN 98

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVI---DSVAALTPRAEIEGDMGESLPGMQARL 178
           +L+ +P     AL   +  ++SGA   +++   D     T R +   + G+ L   Q   
Sbjct: 99  ILVIEPQRDLDALWAAEQCLKSGACHSVLLWGADLEIHQTKRLQAASETGKCL---QFHF 155

Query: 179 MSQALRKLTSSISRS 193
            S +  +L+  +S S
Sbjct: 156 KSTSHNQLSLPVSLS 170


>gi|294868756|ref|XP_002765679.1| meiotic recombination protein DMC1, putative [Perkinsus marinus
           ATCC 50983]
 gi|239865758|gb|EEQ98396.1| meiotic recombination protein DMC1, putative [Perkinsus marinus
           ATCC 50983]
          Length = 259

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 67/148 (45%), Gaps = 29/148 (19%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GTCAFVDAE 104
           + VS+G   LD  L  GG P  ++VE+YGP  SGKT + L +IA +   G G   + D+E
Sbjct: 12  QYVSTGMPSLDAFLR-GGLPVAQLVELYGPAGSGKTQV-LMSIAVAVLAGEGRVFWFDSE 69

Query: 105 HALD-----------SIYARKLGVDLKNLLISQPD------TGEQALEITDMLVRSGAVD 147
             L            S +A   G+ L  + I + D       G +AL+        G   
Sbjct: 70  RTLHPERFQSLCEHRSPHAPIEGM-LSRMAIKECDDLLDLIRGVEALKTIPTC--EGVPC 126

Query: 148 IIVIDSVAALTPRAE------IEGDMGE 169
           ++VIDSVAA     E      +EGD  E
Sbjct: 127 LVVIDSVAASARCTEDIILSRMEGDKSE 154


>gi|58258233|ref|XP_566529.1| RVB1 [Cryptococcus neoformans var. neoformans JEC21]
 gi|134106165|ref|XP_778093.1| hypothetical protein CNBA0960 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74687957|sp|Q5KPZ8|RUVB1_CRYNE RecName: Full=RuvB-like helicase 1
 gi|50260796|gb|EAL23446.1| hypothetical protein CNBA0960 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57222666|gb|AAW40710.1| RVB1, putative [Cryptococcus neoformans var. neoformans JEC21]
          Length = 484

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 15/88 (17%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT---CAFVD 102
           ++++  +LGL ++L  GG   GR + + GP  +GKT LAL   A SQ+ G     CA V 
Sbjct: 59  QILAREALGLHLSLLKGGKYSGRPLLLVGPPGTGKTALAL---ALSQELGSKVPFCAMVG 115

Query: 103 AE---------HALDSIYARKLGVDLKN 121
           +E           L S + R +G+ +K 
Sbjct: 116 SEVYSGEVKKTEVLGSCFRRAIGLRIKE 143


>gi|56418614|ref|YP_145932.1| DNA repair protein RadA [Geobacillus kaustophilus HTA426]
 gi|56378456|dbj|BAD74364.1| DNA repair protein [Geobacillus kaustophilus HTA426]
          Length = 457

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 72/167 (43%), Gaps = 19/167 (11%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           + S  LD  LG GG  KG +V I G    GK+TL L T AQ    G    +V  E ++  
Sbjct: 75  TNSAELDRVLG-GGIVKGSLVLIGGDPGIGKSTLLLQTSAQLAAAGHQVLYVSGEESVKQ 133

Query: 110 IYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           +  R  +L  +   L +      E  LE     V +     ++IDS+  +  R +I    
Sbjct: 134 VKLRAGRLRAECDQLYV----LAEADLEYIVAAVETVQPACVIIDSIQTVY-RTDI---- 184

Query: 168 GESLPG--MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
             S PG   Q R  +  L KL    +++K I +FI     K G + G
Sbjct: 185 -SSAPGSVAQVRECTAELMKL----AKTKGIAIFIVGHVTKEGAIAG 226


>gi|71422025|ref|XP_811996.1| DNA repair protein [Trypanosoma cruzi strain CL Brener]
 gi|70876724|gb|EAN90145.1| DNA repair protein, putative [Trypanosoma cruzi]
          Length = 390

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 28/51 (54%)

Query: 39 GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
          G  F    V S+GS  +D  L  GG   G ++EI+GP ++GK+ L    +A
Sbjct: 34 GRCFSREAVFSTGSAAIDRLLPDGGVACGTVLEIFGPPAAGKSHLVQQMVA 84


>gi|312198985|ref|YP_004019046.1| ABC transporter [Frankia sp. EuI1c]
 gi|311230321|gb|ADP83176.1| ABC transporter related protein [Frankia sp. EuI1c]
          Length = 419

 Score = 37.7 bits (86), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 16/100 (16%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           R E N+V  + A +A  S+  R+   GA+ + G         +V +   +GLDIA     
Sbjct: 13  RAEGNLVTATAASDAPSSRGHRLRVAGAVKRYG---------QVTALRDVGLDIA----- 58

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
              GR + + GP  SGK+TLA       + T GT    DA
Sbjct: 59  --AGRFLVLLGPSGSGKSTLARLLAGVEKLTDGTIRLGDA 96


>gi|257081383|ref|ZP_05575744.1| DNA repair protein RadA [Enterococcus faecalis E1Sol]
 gi|256989413|gb|EEU76715.1| DNA repair protein RadA [Enterococcus faecalis E1Sol]
          Length = 456

 Score = 37.7 bits (86), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 9/107 (8%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113
           L+  LG GG   G +V I G    GK+TL L    Q   TGGT  +V  E + + I  R 
Sbjct: 79  LNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSQQLAATGGTVLYVSGEESAEQIKLRA 137

Query: 114 -KLG-VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
            +LG V+    L ++ D  E +  I  +       D ++IDS+  +T
Sbjct: 138 ERLGTVNETFYLYAETDMHEISRAIEKL-----EPDYVIIDSIQTMT 179


>gi|319941567|ref|ZP_08015893.1| DNA repair protein radA [Sutterella wadsworthensis 3_1_45B]
 gi|319804937|gb|EFW01779.1| DNA repair protein radA [Sutterella wadsworthensis 3_1_45B]
          Length = 462

 Score = 37.4 bits (85), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 19/147 (12%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG  KG +  I G    GK+TL L  +A+    G +C +V  E +   I  R   + L  
Sbjct: 91  GGLVKGGVSLIGGDPGIGKSTLLLQVMARLAAAGLSCIYVSGEESAAQIALRAQRLQL-- 148

Query: 122 LLISQPDTG-----EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
                P TG     E  LE  + ++     + +VIDS+  L       G + +S PG  +
Sbjct: 149 -----PTTGLKLMSEIELEHIEAVINEKRPEFVVIDSIQTL-----FSGAL-DSAPGSVS 197

Query: 177 RLMSQALRKLTSSISRSKCILVFINQM 203
           ++   A R LT +   S   L F+  +
Sbjct: 198 QVRECAAR-LTRAAKTSGASLFFVGHV 223


>gi|256855018|ref|ZP_05560379.1| DNA repair protein RadA [Enterococcus faecalis T8]
 gi|307296630|ref|ZP_07576450.1| DNA repair protein RadA [Enterococcus faecalis TX0411]
 gi|256709531|gb|EEU24578.1| DNA repair protein RadA [Enterococcus faecalis T8]
 gi|306495966|gb|EFM65554.1| DNA repair protein RadA [Enterococcus faecalis TX0411]
 gi|315029632|gb|EFT41564.1| DNA repair protein RadA [Enterococcus faecalis TX4000]
          Length = 456

 Score = 37.4 bits (85), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 9/107 (8%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113
           L+  LG GG   G +V I G    GK+TL L    Q   TGGT  +V  E + + I  R 
Sbjct: 79  LNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSQQLAATGGTVLYVSGEESAEQIKLRA 137

Query: 114 -KLG-VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
            +LG V+    L ++ D  E +  I  +       D ++IDS+  +T
Sbjct: 138 ERLGTVNETFYLYAETDMHEISRAIEKL-----EPDYVIIDSIQTMT 179


>gi|157803628|ref|YP_001492177.1| DNA repair protein RadA [Rickettsia canadensis str. McKiel]
 gi|157784891|gb|ABV73392.1| DNA repair protein RadA [Rickettsia canadensis str. McKiel]
          Length = 446

 Score = 37.4 bits (85), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 4/101 (3%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG   G  + I G    GK+TL L   A +  +   C ++  E +L+ I  R + ++L N
Sbjct: 79  GGLVLGAAILIGGDPGIGKSTLLLQLAASNFASKVHCLYITGEESLNQIKLRAIRLNLTN 138

Query: 122 LLISQPDTGEQALE--ITDMLVRSGAVDIIVIDSVAALTPR 160
              +        LE  IT +      +D++VIDS+  +T +
Sbjct: 139 Y--NTKILAATNLEDIITSIEANKNNIDLVVIDSIQTITTK 177


>gi|289547929|ref|YP_003472917.1| DNA repair protein RadA [Thermocrinis albus DSM 14484]
 gi|289181546|gb|ADC88790.1| DNA repair protein RadA [Thermocrinis albus DSM 14484]
          Length = 454

 Score = 37.4 bits (85), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 90/215 (41%), Gaps = 30/215 (13%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           ++G   LD ALG GG   G+++ I G    GK+TL L    +  +  G   +V  E +  
Sbjct: 66  TTGFKNLDEALG-GGLVAGQVILIAGEPGIGKSTLLLQVSDRFSRLYGKVLYVSGEESGP 124

Query: 109 SIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
            I  R  ++GV    LL+      E  L++ + L    +  ++V+DSV  L  + E+E  
Sbjct: 125 QISLRGQRIGVKSDQLLVLSETHLETVLKVMEEL----SPKMVVVDSVQTLHSQ-ELESS 179

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
            G      Q R  S  L    +   +++ I +F+     K G++ G        + + ++
Sbjct: 180 AGSV---SQVRECSFRL----AEWCKAREIPLFLVGQVNKEGMIAGPKVLEHLVDTVLYF 232

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
              R    RV               +KVVKN+  S
Sbjct: 233 EGERYSFHRV---------------IKVVKNRFGS 252


>gi|82617212|emb|CAI64118.1| DNA repair and recombination protein [uncultured archaeon]
 gi|268322944|emb|CBH36532.1| DNA repair and recombination protein radA [uncultured archaeon]
          Length = 315

 Score = 37.4 bits (85), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 92/219 (42%), Gaps = 45/219 (20%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-----QSQKTG--GTCAF 100
           +++GS  LD  +G GG     + E YG   SGKT +A H +A       +K G  G+   
Sbjct: 79  LTTGSKSLDDLIG-GGLETQALTEFYGEFGSGKTQIA-HQLAVNVQLPPEKGGLDGSAII 136

Query: 101 VDAEHA--------------------LDSIY-ARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E+                     L +I+ AR    + + LL+ +     + L+ T+ 
Sbjct: 137 IDTENTFRPDRIKDMSEGAELDYNDILKNIHVARSYNSNHQILLVEKAGALAEELKATEK 196

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS---RSKCI 196
            VR     +++IDS  A   R+E  G       G  A    +  R L  ++     +  +
Sbjct: 197 PVR-----LMIIDSATAQF-RSEYVGR------GTLADRQQKINRHLHDALKFGDLNNAV 244

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           ++  NQ+  K    FG P    GG+ +   ++ RL +R+
Sbjct: 245 VMITNQVMAKPDAFFGDPTRPIGGHIVGHTATFRLYLRK 283


>gi|256956977|ref|ZP_05561148.1| DNA repair protein RadA [Enterococcus faecalis DS5]
 gi|257078653|ref|ZP_05573014.1| DNA repair protein RadA [Enterococcus faecalis JH1]
 gi|294779998|ref|ZP_06745377.1| DNA repair protein RadA [Enterococcus faecalis PC1.1]
 gi|307268956|ref|ZP_07550320.1| DNA repair protein RadA [Enterococcus faecalis TX4248]
 gi|256947473|gb|EEU64105.1| DNA repair protein RadA [Enterococcus faecalis DS5]
 gi|256986683|gb|EEU73985.1| DNA repair protein RadA [Enterococcus faecalis JH1]
 gi|294452892|gb|EFG21315.1| DNA repair protein RadA [Enterococcus faecalis PC1.1]
 gi|306514764|gb|EFM83315.1| DNA repair protein RadA [Enterococcus faecalis TX4248]
 gi|315033518|gb|EFT45450.1| DNA repair protein RadA [Enterococcus faecalis TX0017]
 gi|315036341|gb|EFT48273.1| DNA repair protein RadA [Enterococcus faecalis TX0027]
          Length = 456

 Score = 37.4 bits (85), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 9/107 (8%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113
           L+  LG GG   G +V I G    GK+TL L    Q   TGGT  +V  E + + I  R 
Sbjct: 79  LNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSQQLAATGGTVLYVSGEESAEQIKLRA 137

Query: 114 -KLG-VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
            +LG V+    L ++ D  E +  I  +       D ++IDS+  +T
Sbjct: 138 ERLGTVNETFYLYAETDMHEISRAIEKL-----EPDYVIIDSIQTMT 179


>gi|227518070|ref|ZP_03948119.1| DNA repair protein RadA [Enterococcus faecalis TX0104]
 gi|229547091|ref|ZP_04435816.1| DNA repair protein RadA [Enterococcus faecalis TX1322]
 gi|229550663|ref|ZP_04439388.1| DNA repair protein RadA [Enterococcus faecalis ATCC 29200]
 gi|255971586|ref|ZP_05422172.1| DNA repair protein RadA [Enterococcus faecalis T1]
 gi|255974558|ref|ZP_05425144.1| DNA repair protein RadA [Enterococcus faecalis T2]
 gi|256618490|ref|ZP_05475336.1| DNA repair protein RadA [Enterococcus faecalis ATCC 4200]
 gi|256964019|ref|ZP_05568190.1| DNA repair protein RadA [Enterococcus faecalis HIP11704]
 gi|257084043|ref|ZP_05578404.1| DNA repair protein RadA [Enterococcus faecalis Fly1]
 gi|257088525|ref|ZP_05582886.1| DNA repair protein radA [Enterococcus faecalis CH188]
 gi|257417463|ref|ZP_05594457.1| DNA repair protein RadA [Enterococcus faecalis AR01/DG]
 gi|257421379|ref|ZP_05598369.1| DNA repair protein radA [Enterococcus faecalis X98]
 gi|293382255|ref|ZP_06628195.1| DNA repair protein RadA [Enterococcus faecalis R712]
 gi|293386696|ref|ZP_06631269.1| DNA repair protein RadA [Enterococcus faecalis S613]
 gi|300861972|ref|ZP_07108052.1| DNA repair protein RadA [Enterococcus faecalis TUSoD Ef11]
 gi|307274051|ref|ZP_07555261.1| DNA repair protein RadA [Enterococcus faecalis TX0855]
 gi|307276285|ref|ZP_07557412.1| DNA repair protein RadA [Enterococcus faecalis TX2134]
 gi|307284098|ref|ZP_07564268.1| DNA repair protein RadA [Enterococcus faecalis TX0860]
 gi|307287142|ref|ZP_07567213.1| DNA repair protein RadA [Enterococcus faecalis TX0109]
 gi|312901257|ref|ZP_07760540.1| DNA repair protein RadA [Enterococcus faecalis TX0470]
 gi|312903149|ref|ZP_07762330.1| DNA repair protein RadA [Enterococcus faecalis TX0635]
 gi|312908767|ref|ZP_07767706.1| DNA repair protein RadA [Enterococcus faecalis DAPTO 512]
 gi|312952474|ref|ZP_07771342.1| DNA repair protein RadA [Enterococcus faecalis TX0102]
 gi|312979227|ref|ZP_07790931.1| DNA repair protein RadA [Enterococcus faecalis DAPTO 516]
 gi|227074506|gb|EEI12469.1| DNA repair protein RadA [Enterococcus faecalis TX0104]
 gi|229304229|gb|EEN70225.1| DNA repair protein RadA [Enterococcus faecalis ATCC 29200]
 gi|229307820|gb|EEN73807.1| DNA repair protein RadA [Enterococcus faecalis TX1322]
 gi|255962604|gb|EET95080.1| DNA repair protein RadA [Enterococcus faecalis T1]
 gi|255967430|gb|EET98052.1| DNA repair protein RadA [Enterococcus faecalis T2]
 gi|256598017|gb|EEU17193.1| DNA repair protein RadA [Enterococcus faecalis ATCC 4200]
 gi|256954515|gb|EEU71147.1| DNA repair protein RadA [Enterococcus faecalis HIP11704]
 gi|256992073|gb|EEU79375.1| DNA repair protein RadA [Enterococcus faecalis Fly1]
 gi|256997337|gb|EEU83857.1| DNA repair protein radA [Enterococcus faecalis CH188]
 gi|257159291|gb|EEU89251.1| DNA repair protein RadA [Enterococcus faecalis ARO1/DG]
 gi|257163203|gb|EEU93163.1| DNA repair protein radA [Enterococcus faecalis X98]
 gi|291080369|gb|EFE17733.1| DNA repair protein RadA [Enterococcus faecalis R712]
 gi|291083865|gb|EFE20828.1| DNA repair protein RadA [Enterococcus faecalis S613]
 gi|295112374|emb|CBL31011.1| DNA replication and repair protein RadA [Enterococcus sp. 7L76]
 gi|300848497|gb|EFK76254.1| DNA repair protein RadA [Enterococcus faecalis TUSoD Ef11]
 gi|306501740|gb|EFM71031.1| DNA repair protein RadA [Enterococcus faecalis TX0109]
 gi|306503469|gb|EFM72718.1| DNA repair protein RadA [Enterococcus faecalis TX0860]
 gi|306507028|gb|EFM76171.1| DNA repair protein RadA [Enterococcus faecalis TX2134]
 gi|306509359|gb|EFM78419.1| DNA repair protein RadA [Enterococcus faecalis TX0855]
 gi|310625205|gb|EFQ08488.1| DNA repair protein RadA [Enterococcus faecalis DAPTO 512]
 gi|310629570|gb|EFQ12853.1| DNA repair protein RadA [Enterococcus faecalis TX0102]
 gi|310633540|gb|EFQ16823.1| DNA repair protein RadA [Enterococcus faecalis TX0635]
 gi|311287992|gb|EFQ66548.1| DNA repair protein RadA [Enterococcus faecalis DAPTO 516]
 gi|311291634|gb|EFQ70190.1| DNA repair protein RadA [Enterococcus faecalis TX0470]
 gi|315143644|gb|EFT87660.1| DNA repair protein RadA [Enterococcus faecalis TX2141]
 gi|315149017|gb|EFT93033.1| DNA repair protein RadA [Enterococcus faecalis TX4244]
 gi|315151329|gb|EFT95345.1| DNA repair protein RadA [Enterococcus faecalis TX0012]
 gi|315153512|gb|EFT97528.1| DNA repair protein RadA [Enterococcus faecalis TX0031]
 gi|315155083|gb|EFT99099.1| DNA repair protein RadA [Enterococcus faecalis TX0043]
 gi|315158526|gb|EFU02543.1| DNA repair protein RadA [Enterococcus faecalis TX0312]
 gi|315163373|gb|EFU07390.1| DNA repair protein RadA [Enterococcus faecalis TX0645]
 gi|315165688|gb|EFU09705.1| DNA repair protein RadA [Enterococcus faecalis TX1302]
 gi|315171284|gb|EFU15301.1| DNA repair protein RadA [Enterococcus faecalis TX1342]
 gi|315174144|gb|EFU18161.1| DNA repair protein RadA [Enterococcus faecalis TX1346]
 gi|315578636|gb|EFU90827.1| DNA repair protein RadA [Enterococcus faecalis TX0630]
 gi|323479277|gb|ADX78716.1| DNA repair protein RadA [Enterococcus faecalis 62]
 gi|327533892|gb|AEA92726.1| DNA repair protein RadA [Enterococcus faecalis OG1RF]
          Length = 456

 Score = 37.4 bits (85), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 9/107 (8%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113
           L+  LG GG   G +V I G    GK+TL L    Q   TGGT  +V  E + + I  R 
Sbjct: 79  LNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSQQLAATGGTVLYVSGEESAEQIKLRA 137

Query: 114 -KLG-VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
            +LG V+    L ++ D  E +  I  +       D ++IDS+  +T
Sbjct: 138 ERLGTVNETFYLYAETDMHEISRAIEKL-----EPDYVIIDSIQTMT 179


>gi|329576203|gb|EGG57721.1| DNA repair protein RadA [Enterococcus faecalis TX1467]
          Length = 456

 Score = 37.4 bits (85), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 9/107 (8%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113
           L+  LG GG   G +V I G    GK+TL L    Q   TGGT  +V  E + + I  R 
Sbjct: 79  LNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSQQLAATGGTVLYVSGEESAEQIKLRA 137

Query: 114 -KLG-VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
            +LG V+    L ++ D  E +  I  +       D ++IDS+  +T
Sbjct: 138 ERLGTVNETFYLYAETDMHEISRAIEKL-----EPDYVIIDSIQTMT 179


>gi|29374698|ref|NP_813850.1| DNA repair protein RadA [Enterococcus faecalis V583]
 gi|227555722|ref|ZP_03985769.1| DNA repair protein RadA [Enterococcus faecalis HH22]
 gi|256761890|ref|ZP_05502470.1| DNA repair protein RadA [Enterococcus faecalis T3]
 gi|257087872|ref|ZP_05582233.1| DNA repair protein RadA [Enterococcus faecalis D6]
 gi|257418807|ref|ZP_05595801.1| DNA repair protein radA [Enterococcus faecalis T11]
 gi|29342156|gb|AAO79922.1| DNA repair protein RadA [Enterococcus faecalis V583]
 gi|227175127|gb|EEI56099.1| DNA repair protein RadA [Enterococcus faecalis HH22]
 gi|256683141|gb|EEU22836.1| DNA repair protein RadA [Enterococcus faecalis T3]
 gi|256995902|gb|EEU83204.1| DNA repair protein RadA [Enterococcus faecalis D6]
 gi|257160635|gb|EEU90595.1| DNA repair protein radA [Enterococcus faecalis T11]
 gi|315026633|gb|EFT38565.1| DNA repair protein RadA [Enterococcus faecalis TX2137]
 gi|315168260|gb|EFU12277.1| DNA repair protein RadA [Enterococcus faecalis TX1341]
 gi|315573954|gb|EFU86145.1| DNA repair protein RadA [Enterococcus faecalis TX0309B]
 gi|315581905|gb|EFU94096.1| DNA repair protein RadA [Enterococcus faecalis TX0309A]
          Length = 456

 Score = 37.4 bits (85), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 9/107 (8%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113
           L+  LG GG   G +V I G    GK+TL L    Q   TGGT  +V  E + + I  R 
Sbjct: 79  LNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSQQLAATGGTVLYVSGEESAEQIKLRA 137

Query: 114 -KLG-VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
            +LG V+    L ++ D  E +  I  +       D ++IDS+  +T
Sbjct: 138 ERLGTVNETFYLYAETDMHEISRAIEKL-----EPDYVIIDSIQTMT 179


>gi|322827814|gb|EFZ31820.1| DNA repair protein, putative [Trypanosoma cruzi]
          Length = 389

 Score = 37.4 bits (85), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 28/51 (54%)

Query: 39 GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
          G  F    V S+GS  +D  L  GG   G ++EI+GP ++GK+ L    +A
Sbjct: 34 GRCFSREAVFSTGSAAIDRLLPDGGVACGTVLEIFGPPAAGKSHLVQQMVA 84


>gi|15606010|ref|NP_213387.1| DNA repair protein RadA [Aquifex aeolicus VF5]
 gi|6647742|sp|O66827|RADA_AQUAE RecName: Full=DNA repair protein RadA homolog; AltName: Full=DNA
           repair protein Sms homolog
 gi|2983190|gb|AAC06790.1| ATP-dependent protease sms [Aquifex aeolicus VF5]
          Length = 444

 Score = 37.4 bits (85), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 8/111 (7%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           ++G   LD ALG GG  KG+++ I G    GK+TL L  I+     G    +V  E +  
Sbjct: 67  TTGFESLDNALG-GGLVKGQVILIAGEPGIGKSTLLLQ-ISDRVANGKKVLYVSGEESGT 124

Query: 109 SI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            I   A++LG++ +NLL+      E+ L+  +    S    ++V+DSV  +
Sbjct: 125 QIALRAKRLGINNENLLVYPEVNLEKILQTLEKEKPS----LLVLDSVQTI 171


>gi|326387779|ref|ZP_08209385.1| DNA repair protein RadA [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207825|gb|EGD58636.1| DNA repair protein RadA [Novosphingobium nitrogenifigens DSM 19370]
          Length = 454

 Score = 37.4 bits (85), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 13/151 (8%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113
            D ALG GG   G  V + G    GK+TL L   A     GG   ++  E A D +  R 
Sbjct: 77  FDRALG-GGLVAGSAVLMGGDPGIGKSTLLLQAAANVASGGGRAIYISGEEASDQVRLRA 135

Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            +LG+    +L++   +     +I   L    A D +VIDS+  +        D  E  P
Sbjct: 136 GRLGLGSAPILLA---SATSVRDILTTLATMPAPDFLVIDSIQTM------HSDSIEGAP 186

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G  +++ + A  +L      S   LV +  +
Sbjct: 187 GTVSQVRACAF-ELIRYAKESGAALVLVGHV 216


>gi|218134187|ref|ZP_03462991.1| hypothetical protein BACPEC_02077 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991562|gb|EEC57568.1| hypothetical protein BACPEC_02077 [Bacteroides pectinophilus ATCC
           43243]
          Length = 457

 Score = 37.4 bits (85), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 72/162 (44%), Gaps = 19/162 (11%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113
           +D  LG GG  +G +V + G    GK+TL L         G    ++  E +L  I  R 
Sbjct: 81  MDRVLG-GGIVEGSLVLVGGDPGIGKSTLLLQMCRNVSAAGKNVLYISGEESLKQIKLRA 139

Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            ++G    N+ +      E  LE  +  ++S   DI++IDS+  +  R EI      S P
Sbjct: 140 GRIGDFTDNMQL----LCETNLEAVESAIKSVKPDIVIIDSIQTMY-REEI-----SSAP 189

Query: 173 G--MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           G   Q R  +  L +    I++S  I +FI     K GV+ G
Sbjct: 190 GSVSQVRESTSVLMQ----IAKSMGISIFIVGHVTKEGVVAG 227


>gi|34581544|ref|ZP_00143024.1| DNA repair protein RadA homolog [Rickettsia sibirica 246]
 gi|28262929|gb|EAA26433.1| DNA repair protein RadA homolog [Rickettsia sibirica 246]
          Length = 444

 Score = 37.4 bits (85), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 4/101 (3%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG   G  + I G    GK+TL L   A +      C ++  E +LD I  R + ++L N
Sbjct: 77  GGLVLGSAILIGGDPGIGKSTLLLQLAASNFAPKMNCLYITGEESLDQIKLRAIRLNLTN 136

Query: 122 LLISQPDTGEQALE--ITDMLVRSGAVDIIVIDSVAALTPR 160
              +        LE  I  +      +D+IVIDS+  +T +
Sbjct: 137 Y--NTDILAATNLEDIIASIEANKNNIDLIVIDSIQTITTK 175


>gi|183220184|ref|YP_001838180.1| DNA repair protein RadA [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189910304|ref|YP_001961859.1| DNA repair protein RadA [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167774980|gb|ABZ93281.1| ATP-dependent serine protease [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167778606|gb|ABZ96904.1| DNA repair protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Paris)']
          Length = 455

 Score = 37.4 bits (85), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 10/106 (9%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YA 112
           LD+ LG GG   G +V + G    GK+TL L  IA++    GT  ++  E +   I   A
Sbjct: 82  LDLVLG-GGIVPGSLVLVGGEPGVGKSTLVLE-IAKNIANQGTVLYISGEESASQIGLRA 139

Query: 113 RKLGVDLKNLLISQPDTGEQ-ALEITDMLVRSGAVDIIVIDSVAAL 157
           +++GV  +N+L+S     E  A  I+D+  +     ++ IDS+  +
Sbjct: 140 KRMGVTSENILLSSEVYAENIAQMISDIKPK-----VVFIDSIQTI 180


>gi|3114719|emb|CAA93142.1| ATP-binding multidrug cassette transporter [Botryotinia fuckeliana]
          Length = 1562

 Score = 37.4 bits (85), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 17/106 (16%)

Query: 60   GIGGFPK-GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA--FVDAEHALDSIYARKLG 116
            G+ G+PK G +V + G   +GKTTL L+T++Q QKTG       VD    L + + R  G
Sbjct: 923  GVNGYPKPGIMVALMGASGAGKTTL-LNTLSQRQKTGVVTGDMLVDGR-PLGTAFQRGTG 980

Query: 117  VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
               +  L    DT  +ALE++ +L +   V            PRAE
Sbjct: 981  FCEQMDLHDGTDTIREALELSAILRQEHTV------------PRAE 1014


>gi|163745040|ref|ZP_02152400.1| hypothetical protein OIHEL45_05615 [Oceanibulbus indolifex HEL-45]
 gi|161381858|gb|EDQ06267.1| hypothetical protein OIHEL45_05615 [Oceanibulbus indolifex HEL-45]
          Length = 484

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 60/124 (48%), Gaps = 15/124 (12%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF--VDA 103
           E V++G   LD  LG G FP G    + GP   GKTT A+  +  + + G   A+   D 
Sbjct: 229 EPVTTGLKELDALLGDGLFP-GTNALLAGPAGVGKTTTAVRCMIAALERGQKAAYFLFDE 287

Query: 104 EHALDSIYARKLGVDLK------NLLISQPDTGEQALEITDMLVRSGAVD-----IIVID 152
             A   I ++ LG+DL+      +L I Q D  E +       VR GAV+     I+VID
Sbjct: 288 RLATLMIRSKALGMDLQPYIDDGSLQIRQIDPAELSPGQFAYAVR-GAVEDNDASIVVID 346

Query: 153 SVAA 156
           S+ A
Sbjct: 347 SLNA 350


>gi|319765238|ref|YP_004130739.1| DNA repair protein RadA [Geobacillus sp. Y412MC52]
 gi|317110104|gb|ADU92596.1| DNA repair protein RadA [Geobacillus sp. Y412MC52]
          Length = 472

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 72/167 (43%), Gaps = 19/167 (11%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           + S  LD  LG GG  KG +V I G    GK+TL L T AQ    G    +V  E ++  
Sbjct: 90  TNSAELDRVLG-GGIVKGSLVLIGGDPGIGKSTLLLQTSAQLAAAGHQVLYVSGEESVKQ 148

Query: 110 IYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           +  R  +L  +   L +      E  LE     V +     ++IDS+  +  R +I    
Sbjct: 149 VKLRAGRLRAECDRLYV----LAEADLEYIVAAVETVQPACVIIDSIQTVY-RTDI---- 199

Query: 168 GESLPG--MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
             S PG   Q R  +  L KL    +++K I +FI     K G + G
Sbjct: 200 -SSAPGSVAQVRECTAELMKL----AKTKGIAIFIVGHVTKEGAIAG 241


>gi|327400799|ref|YP_004341638.1| putative circadian clock protein KaiC [Archaeoglobus veneficus
           SNP6]
 gi|327316307|gb|AEA46923.1| putative circadian clock protein, KaiC [Archaeoglobus veneficus
           SNP6]
          Length = 424

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 59/138 (42%), Gaps = 21/138 (15%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-QKTGGTCAFVDAEHALDSIY--ARK 114
           AL  GGFP+G ++ + G   +GKTT A   I +   K G    ++      D  Y   + 
Sbjct: 18  ALLDGGFPRGSVILLKGDPGAGKTTFAAKFIYEGITKYGEPGIYISFAEPFDEFYRFMKL 77

Query: 115 LGVDLK-----NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           LG+D        L     D    A  I + +V S A+  + IDS+ ALT +         
Sbjct: 78  LGMDFNIDNFCYLEFHGFDEDLLASNILEAIVDSNAMR-VAIDSITALTAQF-------- 128

Query: 170 SLPGMQARLMSQAL-RKL 186
              G +ARL    L RKL
Sbjct: 129 ---GARARLFLNTLNRKL 143


>gi|297528455|ref|YP_003669730.1| DNA repair protein RadA [Geobacillus sp. C56-T3]
 gi|297251707|gb|ADI25153.1| DNA repair protein RadA [Geobacillus sp. C56-T3]
          Length = 457

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 72/167 (43%), Gaps = 19/167 (11%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           + S  LD  LG GG  KG +V I G    GK+TL L T AQ    G    +V  E ++  
Sbjct: 75  TNSAELDRVLG-GGIVKGSLVLIGGDPGIGKSTLLLQTSAQLAAAGHQVLYVSGEESVKQ 133

Query: 110 IYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           +  R  +L  +   L +      E  LE     V +     ++IDS+  +  R +I    
Sbjct: 134 VKLRAGRLRAECDRLYV----LAEADLEYIVAAVETVQPACVIIDSIQTVY-RTDI---- 184

Query: 168 GESLPG--MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
             S PG   Q R  +  L KL    +++K I +FI     K G + G
Sbjct: 185 -SSAPGSVAQVRECTAELMKL----AKTKGIAIFIVGHVTKEGAIAG 226


>gi|74316848|ref|YP_314588.1| SOS cell division inhibitor SulA [Thiobacillus denitrificans ATCC
           25259]
 gi|74056343|gb|AAZ96783.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
           25259]
          Length = 228

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 1/106 (0%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIY-GPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           E +S+G   LD  L  GG+P+G + EI    E  G+  L L  +A+        A+V   
Sbjct: 26  ETLSTGFAELDAELPGGGWPRGTLTEILLEREGIGELRLLLPALARVSGQSAWLAWVAPP 85

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           H   +      G+ L+ LLI++P +   A    +  +RSGA   ++
Sbjct: 86  HVPYAPALAASGIRLERLLIARPQSPADAWWTAEQALRSGACGAVL 131


>gi|34556529|ref|NP_906344.1| DNA repair protein RadA [Wolinella succinogenes DSM 1740]
 gi|34482243|emb|CAE09244.1| DNA REPAIR PROTEIN RADA HOMOLOG DNA REPAIR PROTEIN SMS HOMOLOG
           [Wolinella succinogenes]
          Length = 447

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 7/117 (5%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E ++  SS    LDI LG GG   G +  + G    GK+TL L       ++G    +V 
Sbjct: 65  ERVDKFSSCEEELDIVLG-GGIVPGGLYLVGGSPGVGKSTLLLKMAGNLARSGRPILYVS 123

Query: 103 AEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            E +L  I AR  +LGV    L +      E ALE     + + + +++VIDS+  L
Sbjct: 124 GEESLGQIRARAERLGVMSDALYL----LNEIALENILEALETRSFELMVIDSIQTL 176


>gi|71410643|ref|XP_807606.1| DNA repair protein [Trypanosoma cruzi strain CL Brener]
 gi|70871644|gb|EAN85755.1| DNA repair protein, putative [Trypanosoma cruzi]
          Length = 393

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 28/51 (54%)

Query: 39 GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
          G  F    V S+GS  +D  L  GG   G ++EI+GP ++GK+ L    +A
Sbjct: 34 GRCFSREAVFSTGSAAIDRLLPDGGVACGTVLEIFGPPAAGKSHLVQQMVA 84


>gi|330989647|gb|EGH87750.1| circadian oscillation regulator KaiC-like protein [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 515

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 27/178 (15%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E V SG   LD  L +GG  +G    + GP  SGKTT+ L  +A +   G  C   + + 
Sbjct: 265 EPVPSGVKELDDLL-VGGPLRGTSTLVTGPAGSGKTTVTLAYLAAACARGEKCTIYEFDE 323

Query: 106 ALDSIYARKLGVDLK--------NLLISQPD-----TGEQALEITDMLVRSGAVDIIVID 152
            + ++ +R   +D++         L+I Q D      GE A  +   +   G+  +IV+D
Sbjct: 324 RIATLISRADSMDMELSRHVSSGQLIIQQIDPAEISPGEFAWRVRTEVEERGST-MIVVD 382

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           S         + G M  ++P  Q  ++   + +L S +S+   +   IN     +G M
Sbjct: 383 S---------LNGYMA-AMPQEQQLILQ--MHELLSYLSQLGVVTFLINPQHGLVGSM 428


>gi|303315825|ref|XP_003067917.1| meiotic recombination protein DLH1, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240107593|gb|EER25772.1| meiotic recombination protein DLH1, putative [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 309

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 90/207 (43%), Gaps = 33/207 (15%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHT---IAQSQKT----GGTCAFVDAEHALDS----IY 111
           GF    I E+YG    GKT L+ HT   +AQ  ++     G  A++D E           
Sbjct: 84  GFQSMSISEVYGEFRCGKTQLS-HTMSVVAQLPRSMGGAEGKVAYIDTEGTFRPERVGQI 142

Query: 112 ARKLGVD----LKNLLISQPDTGEQALEITDMLVRS---GAVDIIVIDSVAALTPRAEIE 164
           A + GVD    L+N+  ++    E  LE+ + L +    G   +++IDS+     R +  
Sbjct: 143 AERFGVDPDSSLENIAYARALNSEHQLELLNTLSKEFAGGEYRLLIIDSIMNCF-RVDYC 201

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG--VMFGSPE--TTTGG 220
           G  GE L   Q +L +Q L KL          ++  NQ++   G   +F   +     GG
Sbjct: 202 G-RGE-LADRQQKL-NQFLMKLAHMAEEFNVCVLMTNQVQSDPGASALFAGADGRKPVGG 258

Query: 221 NALKFYSSVRLDIR------RVGSIKD 241
           + L   S+ R+ +R      RV  I+D
Sbjct: 259 HILAHASTTRVLLRKGRGEERVAKIQD 285


>gi|85116816|ref|XP_965126.1| DNA repair protein RAD51 [Neurospora crassa OR74A]
 gi|2182133|dbj|BAA20366.1| MEI3 [Neurospora crassa]
 gi|28926929|gb|EAA35890.1| DNA repair protein RAD51 [Neurospora crassa OR74A]
          Length = 353

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 93/211 (44%), Gaps = 29/211 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G + EI+G   +GK+ +  HT+A + +         G C +
Sbjct: 106 ITTGSKNLDTLLA-GGIETGSVTEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 163

Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDII 149
           +D E     +     A + G+     L N+  ++    +  L++ +    ++      ++
Sbjct: 164 IDTEGTFRPVRLLAVANRYGLSGEEVLDNVAYARAYNSDHQLQLLNQAAAMMCETRFSLL 223

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           ++DS  +L  R +  G  GE L   Q  L ++ +R L          +V  NQ+  ++  
Sbjct: 224 IVDSATSLY-RTDFLG-RGE-LSSRQTHL-AKFMRTLQRLADEFGIAVVITNQVVAQVDG 279

Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
               MF   P+   GGN +   S+ R+ +++
Sbjct: 280 GPSAMFNPDPKKPIGGNIIAHASTTRISLKK 310


>gi|57641724|ref|YP_184202.1| ATPase [Thermococcus kodakarensis KOD1]
 gi|57160048|dbj|BAD85978.1| ATPase, RecA superfamily [Thermococcus kodakarensis KOD1]
          Length = 249

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
          V SG  G D  L  GGFPKG  V + GP  SGKTT A+  + +
Sbjct: 10 VKSGIPGFD-ELVNGGFPKGTTVLVTGPTGSGKTTFAVQFVYK 51


>gi|261417580|ref|YP_003251262.1| DNA repair protein RadA [Geobacillus sp. Y412MC61]
 gi|261374037|gb|ACX76780.1| DNA repair protein RadA [Geobacillus sp. Y412MC61]
          Length = 484

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 72/167 (43%), Gaps = 19/167 (11%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           + S  LD  LG GG  KG +V I G    GK+TL L T AQ    G    +V  E ++  
Sbjct: 102 TNSAELDRVLG-GGIVKGSLVLIGGDPGIGKSTLLLQTSAQLAAAGHQVLYVSGEESVKQ 160

Query: 110 IYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           +  R  +L  +   L +      E  LE     V +     ++IDS+  +  R +I    
Sbjct: 161 VKLRAGRLRAECDRLYV----LAEADLEYIVAAVETVQPACVIIDSIQTVY-RTDI---- 211

Query: 168 GESLPG--MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
             S PG   Q R  +  L KL    +++K I +FI     K G + G
Sbjct: 212 -SSAPGSVAQVRECTAELMKL----AKTKGIAIFIVGHVTKEGAIAG 253


>gi|170743981|ref|YP_001772636.1| putative circadian clock protein, KaiC [Methylobacterium sp. 4-46]
 gi|168198255|gb|ACA20202.1| putative circadian clock protein, KaiC [Methylobacterium sp. 4-46]
          Length = 502

 Score = 37.4 bits (85), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           +++G  GLD  LG GG+   R   I G   SGKTTLAL  +    + G  C ++
Sbjct: 11  IATGVPGLDYILG-GGYAANRAHLIEGRPGSGKTTLALQFLLDGARAGERCLYI 63


>gi|209554222|ref|YP_002284471.1| F0F1 ATP synthase subunit alpha [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|209541723|gb|ACI59952.1| ATP synthase F1, alpha subunit family protein [Ureaplasma
           urealyticum serovar 10 str. ATCC 33699]
          Length = 511

 Score = 37.4 bits (85), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 9/95 (9%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV---D 102
           E +++G + +D+ + IG   KG+   I G   +GKT +AL+TI    + G  C +V    
Sbjct: 130 EQLNTGIIAIDLLIPIG---KGQRELIIGDRQTGKTHIALNTIINQSRAGTKCIYVAIGQ 186

Query: 103 AEHALDSIYARKLGVD-LKN-LLISQPDTG-EQAL 134
              +L ++Y      D LKN ++I  P T  EQ L
Sbjct: 187 KRESLTTVYETLKAHDALKNTIIIDAPLTAYEQYL 221


>gi|304314734|ref|YP_003849881.1| ATPase [Methanothermobacter marburgensis str. Marburg]
 gi|302588193|gb|ADL58568.1| predicted ATPase [Methanothermobacter marburgensis str. Marburg]
          Length = 231

 Score = 37.4 bits (85), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 29/60 (48%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + SG  GLD  +G G  P+  +  +YGP   GK+  +    A   + G  C ++  ++ L
Sbjct: 5   IPSGIRGLDELIGGGAIPENTVTLVYGPPKVGKSIFSYGFTAGGAERGEPCLYISTDYGL 64


>gi|171184701|ref|YP_001793620.1| putative circadian clock protein, KaiC [Thermoproteus neutrophilus
           V24Sta]
 gi|170933913|gb|ACB39174.1| putative circadian clock protein, KaiC [Thermoproteus neutrophilus
           V24Sta]
          Length = 267

 Score = 37.4 bits (85), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 22/171 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +G   LD AL  GG P+G  V + G    GK+ L +H      ++G    +V  E   
Sbjct: 4   IPTGIEVLDKALE-GGVPQGSWVVVTGEPGVGKSILCIHFAYAGLRSGDPVVYVTTEQEF 62

Query: 108 DSIY--ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA-ALTPRAEIE 164
             +   AR+LG+D     +      ++  E+ +++V    +DI  +  VA  LT +A   
Sbjct: 63  RDVMEQARQLGMDFSQFSVYNIAWKKEPEELPEIVV----IDIFGLLKVARQLTEKAR-- 116

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
               E  P    R  + ++  L  +I+ +  IL    +         GSPE
Sbjct: 117 ----EESPDKVRRYAALSIDTLIEAINEAYEILAVAKER--------GSPE 155


>gi|149927176|ref|ZP_01915433.1| hypothetical protein LMED105_07038 [Limnobacter sp. MED105]
 gi|149824115|gb|EDM83336.1| hypothetical protein LMED105_07038 [Limnobacter sp. MED105]
          Length = 792

 Score = 37.4 bits (85), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 75/168 (44%), Gaps = 16/168 (9%)

Query: 3   YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
           YR E   +  SK L  +LS +  + G    + +  Q  ++E         + LD+A    
Sbjct: 209 YRIEHGKIRPSKNLADSLSNM--LLGNREFLMIDDQKLVYE---------MALDLAHSRN 257

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
              K R++ + G   +GK+ +A++ +++  + G  C +V    A  +++  KL    K  
Sbjct: 258 DSSK-RVLIVEGGPGTGKSVVAINLLSEFTQRGMVCQYVSKNAAPRAVFEAKLTGTFKKT 316

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
            I+    G        +  ++   D++++D    L  ++ + G++GE+
Sbjct: 317 RIANLFRGSGGY----VDNQANQFDVLLVDEAHRLNEKSGLYGNLGEN 360


>gi|325292457|ref|YP_004278321.1| DNA repair protein RadA [Agrobacterium sp. H13-3]
 gi|325060310|gb|ADY64001.1| DNA repair protein RadA [Agrobacterium sp. H13-3]
          Length = 466

 Score = 37.4 bits (85), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 59/133 (44%), Gaps = 14/133 (10%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YA 112
           LD A G GGF +G  V I G    GK+TL +   A   + G    +V  E A+  +   A
Sbjct: 78  LDRATG-GGFVRGSAVLIGGDPGIGKSTLLMQAAAALSRRGHRVIYVSGEEAVAQVRLRA 136

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           ++LG    ++L++     E  L       R    D+++IDS+  L        D  +S P
Sbjct: 137 QRLGAAETDVLLAAETNVEDILATISEGKRP---DLVIIDSIQTLW------SDTADSAP 187

Query: 173 G--MQARLMSQAL 183
           G   Q R   QA+
Sbjct: 188 GTVTQVRTGVQAM 200


>gi|330960932|gb|EGH61192.1| KaiC [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 494

 Score = 37.4 bits (85), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 15/120 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +SSG  GLD  LG GG   G    I GP  +GK+ ++L    Q+   G        +  +
Sbjct: 248 MSSGIEGLDSLLG-GGIESGSSTLILGPAGTGKSLISLVFAVQAVARGERVGLFIFDEEM 306

Query: 108 DSIYAR--KLGVDLK------NLLISQPDTGEQALEITDMLVRSGAVDI-----IVIDSV 154
             ++ R  KLG+DL+      NL+I Q D  E +       VR  AVD+     ++IDS+
Sbjct: 307 GLLFERMLKLGIDLRALQNTGNLVIEQIDAAELSPGEFAHRVRR-AVDLKQIKTVIIDSI 365


>gi|256829633|ref|YP_003158361.1| DNA repair protein RadA [Desulfomicrobium baculatum DSM 4028]
 gi|256578809|gb|ACU89945.1| DNA repair protein RadA [Desulfomicrobium baculatum DSM 4028]
          Length = 443

 Score = 37.4 bits (85), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 65/144 (45%), Gaps = 24/144 (16%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VSS   GLD  LG  GF  G ++ + G    GK+TL L   A  + +G    +V  E +L
Sbjct: 64  VSSQLSGLDGILG-SGFVPGGVILLGGEPGIGKSTLLLQVTASMENSGKGVVYVSGEESL 122

Query: 108 DSIYARK-----LGVDLKNLLISQPDTGEQALEITDMLV-RSGAVDIIVIDSVAALTPRA 161
             I +R      LG  L  L  +Q D         D+LV       +IV+DSV  +   +
Sbjct: 123 SQIRSRAERLGMLGGRLTVLATNQAD---------DILVCMEDGPALIVVDSVQTMI-SS 172

Query: 162 EIEGDMGESLPG--MQARLMSQAL 183
            +EG     LPG   Q R ++ AL
Sbjct: 173 SVEG-----LPGSVSQVRAVATAL 191


>gi|229917385|ref|YP_002886031.1| DNA repair protein RadA [Exiguobacterium sp. AT1b]
 gi|229468814|gb|ACQ70586.1| DNA repair protein RadA [Exiguobacterium sp. AT1b]
          Length = 458

 Score = 37.4 bits (85), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 71/162 (43%), Gaps = 29/162 (17%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V + S   D  LG GG   G +V + G    GK+T+ L   A    +G    ++  E +L
Sbjct: 73  VHTNSREFDRVLG-GGIVPGSLVLVGGDPGIGKSTILLQVSAHLAHSGKKVLYISGEESL 131

Query: 108 DS--IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD-----IIVIDSVAALTPR 160
               + A +LG+   +L +         L  TDML+    +D      ++IDS+      
Sbjct: 132 KQTKLRAERLGLPTDDLFV---------LAETDMLMIERVIDEEQPGFVIIDSIQT---- 178

Query: 161 AEIEGDMGESLPG--MQARLMSQALRKLTSSISRSKCILVFI 200
             +  D  +S PG   Q R  + AL K    I++++ I VFI
Sbjct: 179 --VYMDEIQSAPGSVSQVRECTAALMK----IAKTRGIAVFI 214


>gi|225714670|gb|ACO13181.1| DNA repair protein RAD51 homolog 1 [Lepeophtheirus salmonis]
          Length = 350

 Score = 37.4 bits (85), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 89/219 (40%), Gaps = 47/219 (21%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100
           +++GS  LD  L  GG   G I E++G   +GK+ L  HT+A + +         G C +
Sbjct: 113 ITTGSKELDKLLK-GGIETGSITELFGEFRTGKSQLC-HTLAVTCQLPIDHGGAEGKCLY 170

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E                      LD++ YAR    D ++ L+ Q       L     
Sbjct: 171 IDTEGTFRPERLLAVAERYNLSGNDVLDNVAYARAYNSDHQSQLLIQASAMMAELRYA-- 228

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
                   +I++DS  AL  R +  G    S   M    +++ LR L          +V 
Sbjct: 229 --------LIIVDSSTALY-RTDYSGRGELSTRQMH---LARFLRMLLRLADEFGVGVVI 276

Query: 200 INQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
            NQ+  ++    MF + P+   GGN +   S+ RL +R+
Sbjct: 277 TNQVVAQVDGAAMFSADPKKPIGGNIMAHASTTRLYLRK 315


>gi|221055874|ref|XP_002259075.1| recombinase rad51 [Plasmodium knowlesi strain H]
 gi|193809146|emb|CAQ39848.1| recombinase rad51, putative [Plasmodium knowlesi strain H]
          Length = 350

 Score = 37.4 bits (85), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 98/211 (46%), Gaps = 33/211 (15%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-----QKTG--GTCAFV 101
           ++GS  LD +L  GG   G I E++G   +GK+ L  HT+A +     +++G  G C ++
Sbjct: 113 TTGSKQLD-SLLKGGIETGGITELFGEFRTGKSQLC-HTLAITCQLPIEQSGGEGKCLWI 170

Query: 102 DAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------D 147
           D E           A++ G+     L N+  ++    +     T++L+ + A+       
Sbjct: 171 DTEGTFRPERIVAIAKRYGLHPTDCLNNIAYAKAYNCDHQ---TELLIDASAMMADARFA 227

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++++DS  AL  R+E  G  GE L   Q+ L  + LR L          ++  NQ+  K+
Sbjct: 228 LLIVDSATALY-RSEYIG-RGE-LANRQSHL-CRFLRGLQRIADIYGVAVIITNQVVAKV 283

Query: 208 GVMF---GSPETTTGGNALKFYSSVRLDIRR 235
             M    G+ +   GGN +   S  RL +R+
Sbjct: 284 DAMNVFGGNDKIPIGGNIIAHASQTRLYLRK 314


>gi|56551485|ref|YP_162324.1| DNA repair protein RadA [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241761131|ref|ZP_04759220.1| DNA repair protein RadA [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|260752906|ref|YP_003225799.1| DNA repair protein RadA [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|56543059|gb|AAV89213.1| DNA repair protein RadA [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241374750|gb|EER64211.1| DNA repair protein RadA [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|258552269|gb|ACV75215.1| DNA repair protein RadA [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 455

 Score = 37.4 bits (85), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 14/180 (7%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           ++V++  A +   +    +   G I++LG+  +     E + +G    D  LG GGF  G
Sbjct: 32  SLVEEKIAPKTPFTNRHNLRTGGNIVRLGNLATEQPLPERMVTGIAEFDRVLG-GGFVSG 90

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLIS 125
               I G    GK+TL L    +    G    ++  E A+D I   A++LG     + ++
Sbjct: 91  SATLIGGDPGIGKSTLLLQAGVRLALAGKEVVYISGEEAVDQIRLRAKRLGFGQAPVQLA 150

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM--QARLMSQAL 183
              +    L   + L     +D ++IDS+  +        DM E  PG   Q R  SQ L
Sbjct: 151 AASSVRDILATLEQLPH---IDFLIIDSIQTMY------SDMIEGAPGTVSQVRASSQEL 201


>gi|330919812|ref|XP_003298770.1| hypothetical protein PTT_09575 [Pyrenophora teres f. teres 0-1]
 gi|311327906|gb|EFQ93157.1| hypothetical protein PTT_09575 [Pyrenophora teres f. teres 0-1]
          Length = 412

 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 7/87 (8%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSL-GLDIALGIGGFPKGRIVEIYGPE 76
           +A   +Q+++ +GA  +  S G I +  +V+S  SL G D++   GG+ +G++ E++GP 
Sbjct: 19  SASQALQKLHARGA--RTVSTG-ITQLDKVLSPPSLPGHDVS---GGYTRGKVTEVFGPS 72

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDA 103
             GKT   +     +   G    +VDA
Sbjct: 73  GVGKTAFGIQAAVSALSEGQQVIWVDA 99


>gi|330882622|gb|EGH16771.1| circadian oscillation regulator KaiC-like protein [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 551

 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 27/178 (15%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E V SG   LD  L +GG  +G    + GP  SGKTT+ L  +A +   G  C   + + 
Sbjct: 301 EPVPSGVKELDDLL-VGGPLRGTSTLVTGPAGSGKTTVTLAYLAAACARGEKCTIYEFDE 359

Query: 106 ALDSIYAR--KLGVDLK------NLLISQPD-----TGEQALEITDMLVRSGAVDIIVID 152
            + ++ +R   +G++L        L+I Q D      GE A  +   +   G+  +IV+D
Sbjct: 360 RIATLISRADSMGMELSRHVSSGQLIIQQIDPAEISPGEFAWRVRTEVEERGST-MIVVD 418

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           S         + G M  ++P  Q  ++   + +L S +S+   +   IN     +G M
Sbjct: 419 S---------LNGYMA-AMPQEQQLILQ--MHELLSYLSQLGVVTFLINPQHGLVGSM 464


>gi|317125371|ref|YP_004099483.1| DnaB domain protein helicase [Intrasporangium calvum DSM 43043]
 gi|315589459|gb|ADU48756.1| DnaB domain protein helicase domain protein [Intrasporangium calvum
           DSM 43043]
          Length = 346

 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 57/137 (41%), Gaps = 17/137 (12%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
           G  V  +G   LD  L  GGF  G +V + G   +GKTTL       +   GGT      
Sbjct: 29  GATVHPTGFAALDATL-TGGFRSGELVLVGGAAGNGKTTLGFQFARNAVAAGGTALVFSY 87

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL-TPRAE 162
           EH   ++  R         LIS      +A+E    L  +GAVD   I + A + + RA 
Sbjct: 88  EHEAHTLLER---------LISM-----EAMESLQSLEGAGAVDTFGISNAADVHSVRAA 133

Query: 163 IE-GDMGESLPGMQARL 178
            E G  G  L  + A L
Sbjct: 134 FEAGSQGAPLDALLAGL 150


>gi|125535754|gb|EAY82242.1| hypothetical protein OsI_37447 [Oryza sativa Indica Group]
          Length = 348

 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 85/191 (44%), Gaps = 35/191 (18%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +++GS  LD  LG GG     I E +G   SGKT LA HT+  S +              
Sbjct: 108 ITTGSQALDELLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSTQI------------- 152

Query: 108 DSIYARKLGVDLK-NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
             IYAR    + + NLL+        A ++ +   R     ++++DSV AL  R +  G 
Sbjct: 153 --IYARAYTYEHQYNLLLGL------AAKMAEEPFR-----LLIVDSVIALF-RVDFSGR 198

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG--VMFGSPETTTGGNALK 224
            GE L   Q +L +Q L +LT         +   NQ+    G  +    P+   GG+ L 
Sbjct: 199 -GE-LAERQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLA 255

Query: 225 FYSSVRLDIRR 235
             +++RL +R+
Sbjct: 256 HAATIRLMLRK 266


>gi|331005106|ref|ZP_08328509.1| DNA repair protein RadA [gamma proteobacterium IMCC1989]
 gi|330421075|gb|EGG95338.1| DNA repair protein RadA [gamma proteobacterium IMCC1989]
          Length = 462

 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 10/119 (8%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E +  +++G+   D  LG GG   G +V I G   +GK+TL L  +    +   T  +V
Sbjct: 75  LEEVPRITTGTQEFDRVLG-GGLVSGSVVLIGGHPGAGKSTLLLQVLCHLSE-AHTTLYV 132

Query: 102 DAEHALDSI--YARKLGVDLKNL-LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
             E +L  +   A++LG+  +NL ++S  +T  + L +T   +R     I+VIDS+  +
Sbjct: 133 TGEESLQQVAMRAQRLGLQSQNLNMLS--ETNVEQLCVTADTIRP---KIMVIDSIQVM 186


>gi|183508441|ref|ZP_02957983.1| ATP synthase F1, alpha subunit family protein [Ureaplasma parvum
           serovar 14 str. ATCC 33697]
 gi|182675851|gb|EDT87756.1| ATP synthase F1, alpha subunit family protein [Ureaplasma parvum
           serovar 14 str. ATCC 33697]
          Length = 511

 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 9/95 (9%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV---D 102
           E +++G + +D+ + IG   KG+   I G   +GKT +AL+TI    + G  C +V    
Sbjct: 130 EQLNTGIVAIDLLIPIG---KGQRELIIGDRQTGKTHIALNTIINQSRAGTKCIYVAIGQ 186

Query: 103 AEHALDSIYARKLGVD-LKN-LLISQPDTG-EQAL 134
              +L ++Y      D LKN ++I  P T  EQ L
Sbjct: 187 KRESLTTVYETLKAHDALKNTIIIDAPLTAYEQYL 221


>gi|257052930|ref|YP_003130763.1| KaiA binding [Halorhabdus utahensis DSM 12940]
 gi|256691693|gb|ACV12030.1| KaiA binding [Halorhabdus utahensis DSM 12940]
          Length = 228

 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           ++SG  G D  L  GG    R+  + GP  SGKTT +   I Q  K G TC +V
Sbjct: 3   LASGVPGFD-ELVEGGLLPNRLYVVSGPPGSGKTTFSSMFITQGAKEGDTCLYV 55


>gi|218439947|ref|YP_002378276.1| circadian clock protein KaiC [Cyanothece sp. PCC 7424]
 gi|218172675|gb|ACK71408.1| putative circadian clock protein, KaiC [Cyanothece sp. PCC 7424]
          Length = 506

 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E IE + +G  G D  L  GG PKGR   + G   S KT  A   +A+  K G    FV 
Sbjct: 8   EYIEKLETGIPGFDF-LSEGGLPKGRATLVAGTAGSAKTVFACQFLAEGIKRGENGVFVT 66

Query: 103 AEH 105
            E 
Sbjct: 67  FEE 69


>gi|82617156|emb|CAI64063.1| DNA repair and recombination protein [uncultured archaeon]
 gi|82617268|emb|CAI64174.1| DNA repair and recombination protein [uncultured archaeon]
 gi|268323001|emb|CBH36589.1| DNA repair and recombination protein radA [uncultured archaeon]
          Length = 315

 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 88/211 (41%), Gaps = 29/211 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-------QSQKTGGTCAF 100
           +++GS   D  LG GG     + E YG   SGKT +A H +A       ++    G+   
Sbjct: 79  LTTGSTSFDDLLG-GGLETQALTEFYGEFGSGKTQIA-HQLAVNVQLPPENGGLNGSVII 136

Query: 101 VDAEHAL------DSIYARKLGVD--LKNLLISQPDTGEQALEITDMLVR--------SG 144
           +D E+        D      L  D  LKN+ +++       + + D   R          
Sbjct: 137 IDTENTFRPERIKDMAEGASLDPDEILKNIHVARAYNSNHQILLVDKAERLAEELIDTEK 196

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            V ++++DS  A   R+E    +G      + + +++ L         +  +++  NQ++
Sbjct: 197 PVRLLIVDSATAHF-RSEY---VGRGTLADRQQKINKHLHDTLRFGDLNNAVVMITNQVQ 252

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           ++    FG P    GG+ +   ++ RL +R+
Sbjct: 253 VRPDAFFGDPTRPIGGHVVGHTATFRLYLRK 283


>gi|241518476|ref|YP_002979104.1| putative circadian clock protein, KaiC [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862889|gb|ACS60553.1| putative circadian clock protein, KaiC [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 496

 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +S+G+ GLD+ L  GG P  R+  + G   SGKTTLAL  + +  + G    ++
Sbjct: 4   TISTGNEGLDLILA-GGLPARRLYLLEGAPGSGKTTLALQFLREGVRQGEKALYI 57



 Score = 36.6 bits (83), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 75/177 (42%), Gaps = 25/177 (14%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E ++SG   LD   G GG  +G    + GP  SGKTT+AL  +  +   G  C   + + 
Sbjct: 246 ETIASGIGELDDLFG-GGPMRGTCTLVTGPAGSGKTTVALQYLYAACARGERCTVYEFDE 304

Query: 106 ALDSIY--ARKLGVDLK------NLLISQPDTGEQALEITDMLVRSGAVD----IIVIDS 153
            + ++   A+   +DL+       L++ Q D  E +       VR    D    +IVIDS
Sbjct: 305 RIGTLLTRAKAFSLDLQAFIDDGTLVVQQIDPAEISPGEFAARVRREVEDRGSRLIVIDS 364

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
                    + G M  ++P  Q  ++   + +L S +S    +   +N     +G M
Sbjct: 365 ---------LNGYMA-AMPQEQQLILQ--MHELLSYLSHKGVVTFLLNPQHGLVGTM 409


>gi|289620542|emb|CBI52903.1| putative RAD51 protein [Sordaria macrospora]
          Length = 353

 Score = 37.0 bits (84), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 52/244 (21%), Positives = 103/244 (42%), Gaps = 35/244 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G + EI+G   +GK+ +  HT+A + +         G C +
Sbjct: 106 ITTGSKNLDTLLA-GGIETGSVTEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 163

Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDII 149
           +D E     +     A + G+     L N+  ++    +  L++ +    ++      ++
Sbjct: 164 IDTEGTFRPVRLLAVANRYGLSGEEVLDNVAYARAYNSDHQLQLLNQAAAMMCETRFSLL 223

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           ++DS  +L  R +  G  GE L   Q  L ++ +R L          +V  NQ+  ++  
Sbjct: 224 IVDSATSLY-RTDFLG-RGE-LSSRQTHL-AKFMRTLQRLADEFGIAVVITNQVVAQVDG 279

Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               MF   P+   GGN +   S+ R+ ++      R+  I D   +  +     + ++ 
Sbjct: 280 GPSAMFNPDPKKPIGGNIIAHASTTRISLKKGRGETRIAKIYDSPCLPESDCLFAIQEDG 339

Query: 259 MASP 262
           +  P
Sbjct: 340 IGDP 343


>gi|256960777|ref|ZP_05564948.1| DNA repair protein RadA [Enterococcus faecalis Merz96]
 gi|256951273|gb|EEU67905.1| DNA repair protein RadA [Enterococcus faecalis Merz96]
          Length = 456

 Score = 37.0 bits (84), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 9/107 (8%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113
           L+  LG GG   G +V I G    GK+TL L    Q   TGGT  +V  E + + I  R 
Sbjct: 79  LNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSQQLAATGGTVLYVSGEESAEQIKLRA 137

Query: 114 -KLG-VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
            +LG V+    L ++ D  E +  I  +       D ++IDS+  +T
Sbjct: 138 ERLGTVNETFYLYAETDMYEISRAIEKL-----EPDYVIIDSIQTMT 179


>gi|302830708|ref|XP_002946920.1| hypothetical protein VOLCADRAFT_103167 [Volvox carteri f.
           nagariensis]
 gi|300267964|gb|EFJ52146.1| hypothetical protein VOLCADRAFT_103167 [Volvox carteri f.
           nagariensis]
          Length = 414

 Score = 37.0 bits (84), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
           I+V+ +G   +D  LG GG  +G +VE+ G   SGKT L L   A +   G    +VD 
Sbjct: 92  IQVLPTGCAAIDTLLG-GGLREGTLVEVAGETGSGKTQLCLSAAATTAYRGEAVLYVDC 149


>gi|284162221|ref|YP_003400844.1| DNA repair and recombination protein RadB [Archaeoglobus profundus
           DSM 5631]
 gi|284012218|gb|ADB58171.1| DNA repair and recombination protein RadB [Archaeoglobus profundus
           DSM 5631]
          Length = 220

 Score = 37.0 bits (84), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           + +GS  LD  L  GGF  G + +I+G   +GKT++ L +   +   G   A++D E
Sbjct: 3   IPTGSRCLDKLLS-GGFESGTVTQIFGASGTGKTSICLMSAYSAVSQGYKVAYIDTE 58


>gi|171920805|ref|ZP_02931988.1| ATP synthase F1, alpha subunit family protein [Ureaplasma
           urealyticum serovar 13 str. ATCC 33698]
 gi|185178770|ref|ZP_02964572.1| ATP synthase F1, alpha subunit family protein [Ureaplasma
           urealyticum serovar 5 str. ATCC 27817]
 gi|188024402|ref|ZP_02997063.1| ATP synthase F1, alpha subunit family protein [Ureaplasma
           urealyticum serovar 7 str. ATCC 27819]
 gi|188518473|ref|ZP_03003960.1| ATP synthase F1, alpha subunit family protein [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
 gi|188524170|ref|ZP_03004234.1| ATP synthase F1, alpha subunit family protein [Ureaplasma
           urealyticum serovar 12 str. ATCC 33696]
 gi|195867427|ref|ZP_03079431.1| ATP synthase F1, alpha subunit family protein [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
 gi|198273401|ref|ZP_03205937.1| ATP synthase F1, alpha subunit family protein [Ureaplasma
           urealyticum serovar 4 str. ATCC 27816]
 gi|225551563|ref|ZP_03772509.1| ATP synthase F1, alpha subunit family protein [Ureaplasma
           urealyticum serovar 8 str. ATCC 27618]
 gi|171903569|gb|EDT49858.1| ATP synthase F1, alpha subunit family protein [Ureaplasma
           urealyticum serovar 13 str. ATCC 33698]
 gi|184209383|gb|EDU06426.1| ATP synthase F1, alpha subunit family protein [Ureaplasma
           urealyticum serovar 5 str. ATCC 27817]
 gi|188018674|gb|EDU56714.1| ATP synthase F1, alpha subunit family protein [Ureaplasma
           urealyticum serovar 7 str. ATCC 27819]
 gi|188997972|gb|EDU67069.1| ATP synthase F1, alpha subunit family protein [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
 gi|195659841|gb|EDX53221.1| ATP synthase F1, alpha subunit family protein [Ureaplasma
           urealyticum serovar 12 str. ATCC 33696]
 gi|195660903|gb|EDX54156.1| ATP synthase F1, alpha subunit family protein [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
 gi|198249921|gb|EDY74701.1| ATP synthase F1, alpha subunit family protein [Ureaplasma
           urealyticum serovar 4 str. ATCC 27816]
 gi|225379378|gb|EEH01743.1| ATP synthase F1, alpha subunit family protein [Ureaplasma
           urealyticum serovar 8 str. ATCC 27618]
          Length = 511

 Score = 37.0 bits (84), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 9/95 (9%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV---D 102
           E +++G + +D+ + IG   KG+   I G   +GKT +AL+TI    + G  C +V    
Sbjct: 130 EQLNTGIVAIDLLIPIG---KGQRELIIGDRQTGKTHIALNTIINQSRAGTKCIYVAIGQ 186

Query: 103 AEHALDSIYARKLGVD-LKN-LLISQPDTG-EQAL 134
              +L ++Y      D LKN ++I  P T  EQ L
Sbjct: 187 KRESLTTVYETLKAHDALKNTIIIDAPLTAYEQYL 221


>gi|13357609|ref|NP_077883.1| F0F1 ATP synthase subunit alpha [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|170762321|ref|YP_001752132.1| F0F1 ATP synthase subunit alpha [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|171920224|ref|ZP_02931598.1| ATP synthase F1, alpha subunit homolog [Ureaplasma parvum serovar 1
           str. ATCC 27813]
 gi|186701828|ref|ZP_02971497.1| ATP synthase subunit alpha 2 (ATPase subunit alpha 2)(ATP synthase
           F1 sector subunit alpha 2) [Ureaplasma parvum serovar 6
           str. ATCC 27818]
 gi|11266605|pir||B82941 ATP synthase alpha chain UU053 [imported] - Ureaplasma urealyticum
 gi|6899001|gb|AAF30458.1|AE002104_11 ATP synthase alpha chain [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827898|gb|ACA33160.1| ATP synthase subunit alpha 2 [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171902617|gb|EDT48906.1| ATP synthase F1, alpha subunit homolog [Ureaplasma parvum serovar 1
           str. ATCC 27813]
 gi|186701116|gb|EDU19398.1| ATP synthase subunit alpha 2 (ATPase subunit alpha 2)(ATP synthase
           F1 sector subunit alpha 2) [Ureaplasma parvum serovar 6
           str. ATCC 27818]
          Length = 511

 Score = 37.0 bits (84), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 9/95 (9%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV---D 102
           E +++G + +D+ + IG   KG+   I G   +GKT +AL+TI    + G  C +V    
Sbjct: 130 EQLNTGIVAIDLLIPIG---KGQRELIIGDRQTGKTHIALNTIINQSRAGTKCIYVAIGQ 186

Query: 103 AEHALDSIYARKLGVD-LKN-LLISQPDTG-EQAL 134
              +L ++Y      D LKN ++I  P T  EQ L
Sbjct: 187 KRESLTTVYETLKAHDALKNTIIIDAPLTAYEQYL 221


>gi|315187587|gb|EFU21343.1| Non-specific serine/threonine protein kinase [Spirochaeta
           thermophila DSM 6578]
          Length = 482

 Score = 37.0 bits (84), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +SSG  GLD  L  GG+P+ +   + G    GKTTL +H +A+  K G    F+  E
Sbjct: 6   LSSGISGLDHILE-GGYPERKAYLVRGGPGVGKTTLGMHFLAEGVKQGQPVLFISME 61


>gi|225550563|ref|ZP_03771512.1| ATP synthase F1, alpha subunit family protein [Ureaplasma
           urealyticum serovar 2 str. ATCC 27814]
 gi|225379717|gb|EEH02079.1| ATP synthase F1, alpha subunit family protein [Ureaplasma
           urealyticum serovar 2 str. ATCC 27814]
          Length = 511

 Score = 37.0 bits (84), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 9/95 (9%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV---D 102
           E +++G + +D+ + IG   KG+   I G   +GKT +AL+TI    + G  C +V    
Sbjct: 130 EQLNTGIVAIDLLIPIG---KGQRELIIGDRQTGKTHIALNTIINQSRAGTKCIYVAIGQ 186

Query: 103 AEHALDSIYARKLGVD-LKN-LLISQPDTG-EQAL 134
              +L ++Y      D LKN ++I  P T  EQ L
Sbjct: 187 KRESLTTVYETLKAHDALKNTIIIDAPLTAYEQYL 221


>gi|158520390|ref|YP_001528260.1| DNA repair protein RadA [Desulfococcus oleovorans Hxd3]
 gi|158509216|gb|ABW66183.1| DNA repair protein RadA [Desulfococcus oleovorans Hxd3]
          Length = 452

 Score = 37.0 bits (84), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 10/146 (6%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
            D  LG GG   G +V + G    GK+TL L    +  + G T  +V  E +L  I  R 
Sbjct: 74  FDRVLG-GGIVAGSLVLVGGDPGIGKSTLMLQAAQKLSENGCTVLYVSGEESLRQIKMRS 132

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
             +   +L  S     E  +E    L RS   D++VIDS+  ++      GD   S PG 
Sbjct: 133 RRL-CPSLSSSLLAAAETDIERVTALARSAKPDVMVIDSIQTMS-----SGDF-SSAPGS 185

Query: 175 QARLMSQALRKLTSSISRSKCILVFI 200
             ++    +R +  ++++   I VF+
Sbjct: 186 VGQVREATMRLM--ALAKKTGICVFL 209


>gi|257866297|ref|ZP_05645950.1| DNA repair protein RadA [Enterococcus casseliflavus EC30]
 gi|257873187|ref|ZP_05652840.1| DNA repair protein RadA [Enterococcus casseliflavus EC10]
 gi|257875916|ref|ZP_05655569.1| DNA repair protein RadA [Enterococcus casseliflavus EC20]
 gi|325567619|ref|ZP_08144286.1| DNA repair protein RadA [Enterococcus casseliflavus ATCC 12755]
 gi|257800255|gb|EEV29283.1| DNA repair protein RadA [Enterococcus casseliflavus EC30]
 gi|257807351|gb|EEV36173.1| DNA repair protein RadA [Enterococcus casseliflavus EC10]
 gi|257810082|gb|EEV38902.1| DNA repair protein RadA [Enterococcus casseliflavus EC20]
 gi|325159052|gb|EGC71198.1| DNA repair protein RadA [Enterococcus casseliflavus ATCC 12755]
          Length = 456

 Score = 37.0 bits (84), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 9/107 (8%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YA 112
           L+  LG GG   G ++ I G    GK+TL L    Q    GGT  +V  E + + I   A
Sbjct: 79  LNRVLG-GGVVPGSLILIGGDPGIGKSTLLLQVSQQLAAIGGTVLYVSGEESAEQIKMRA 137

Query: 113 RKLG-VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           ++LG +D +  L  + D  E +  I ++       D ++IDS+  +T
Sbjct: 138 QRLGAIDTEFYLYGETDMSEISKAIENI-----RPDYVIIDSIQTMT 179


>gi|170763997|ref|ZP_02636870.2| DNA repair protein RadA [Clostridium perfringens B str. ATCC 3626]
 gi|170710756|gb|EDT22938.1| DNA repair protein RadA [Clostridium perfringens B str. ATCC 3626]
          Length = 461

 Score = 37.0 bits (84), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 66/150 (44%), Gaps = 19/150 (12%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113
           L+  LG GG  KG +  I G    GK+TL L T     K  G   +V  E + + I  R 
Sbjct: 85  LNRVLG-GGLVKGSLTLISGDPGIGKSTLLLQTANNISKKYGKVLYVSGEESEEQIKIRG 143

Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            +L VD + L I      E  L++ +  +       I+IDS+        I  ++  S P
Sbjct: 144 DRLKVDAEELYI----VSETNLDVIEAYIDKLEPAFIIIDSIQT------IYREIVSSAP 193

Query: 173 G--MQARLMSQALRKLTSSISRSKCILVFI 200
           G   Q +  S A+ +    I++ K I +FI
Sbjct: 194 GSVSQVKECSNAVMR----IAKGKNIPLFI 219


>gi|118085535|ref|XP_418543.2| PREDICTED: similar to X-ray repair cross-complementing protein 2
           [Gallus gallus]
          Length = 379

 Score = 37.0 bits (84), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 75/192 (39%), Gaps = 31/192 (16%)

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQS--QKTGG----TCAFVDA-------------EHA 106
            G ++E +GPE +GKT +  H IA+    K+GG       F+D              EH 
Sbjct: 141 HGDVIEFHGPEGTGKTEMLYHLIARCIIPKSGGGLEVEVMFIDTDYHFDMLRLVTILEHR 200

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQAL----EITDMLVRSGAVDIIVIDSVAALTPRAE 162
           L+      +   L  L +   ++  Q L     + +M     ++ ++++DS++A      
Sbjct: 201 LEQSTEEMMKRCLGRLFLVNCNSSTQLLLTLYSLENMFCTHPSLCLLILDSISAFYWIDR 260

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
             G  GESL   +  L   A       + R   +++F         +M  S  +  G   
Sbjct: 261 SNG--GESLNSQEMNLKKCA--NFLEKLVREHHLVLFATTQ----SIMQKSTNSAEGFFP 312

Query: 223 LKFYSSVRLDIR 234
           LK  S +  D R
Sbjct: 313 LKLQSEIDADYR 324


>gi|18312440|ref|NP_559107.1| hypothetical protein PAE1156 [Pyrobaculum aerophilum str. IM2]
 gi|18159897|gb|AAL63289.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
          Length = 268

 Score = 37.0 bits (84), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 12/152 (7%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G   LD AL  GG P+G  V + G    GK+ L +H      + G    +V  E   
Sbjct: 4   ISTGVDVLDKALE-GGIPQGSWVVVTGEPGVGKSILCIHFAYAGLRAGDPVVYVTTEQEF 62

Query: 108 DSIY--ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
             +   A++LG+D     +      ++  E+          +I+VID    L    ++  
Sbjct: 63  RDVMEQAKQLGMDFSRFSVYNIAWKKEPEELP---------EIVVIDIFGLLKVARQLTE 113

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
              E  P    R  + ++  L  +I+ +  IL
Sbjct: 114 KSKEESPEKVKRYAALSIDTLIEAINEAYHIL 145


>gi|307294160|ref|ZP_07574004.1| DNA repair protein RadA [Sphingobium chlorophenolicum L-1]
 gi|306880311|gb|EFN11528.1| DNA repair protein RadA [Sphingobium chlorophenolicum L-1]
          Length = 455

 Score = 37.0 bits (84), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 58/140 (41%), Gaps = 16/140 (11%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G    D ALG GG   G    I G    GK+TL L   A+    G + A++  E A D
Sbjct: 71  STGIAEFDRALG-GGIVSGSATLIGGDPGIGKSTLLLQAAARIASAGHSVAYISGEEAAD 129

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG---AVDIIVIDSVAALTPRAEIEG 165
            +  R   + L N     P     A  + D+L   G      +++IDS+  +        
Sbjct: 130 QVRLRAQRLGLGN----APVRLASATSVRDILTTLGEGAPPALLIIDSIQTM------HS 179

Query: 166 DMGESLPGM--QARLMSQAL 183
           D+ E  PG   Q R  SQ L
Sbjct: 180 DLIEGAPGTVSQVRASSQEL 199


>gi|262195673|ref|YP_003266882.1| circadian clock protein, KaiC [Haliangium ochraceum DSM 14365]
 gi|262079020|gb|ACY14989.1| putative circadian clock protein, KaiC [Haliangium ochraceum DSM
           14365]
          Length = 478

 Score = 37.0 bits (84), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 15/99 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD-AEHA 106
           + +G  GLD  L  GG+ +GR   + G    GKTTL  H +    + G  C F+  +E  
Sbjct: 5   IPTGLSGLDEILH-GGYIRGRAYLVCGGPGHGKTTLGAHFLHAGHQAGEACLFISLSERP 63

Query: 107 LDSIYARKL-GVDLKNLLISQPDTGEQALEITDMLVRSG 144
              I   KL G+DL              +E+ D+  RSG
Sbjct: 64  KQLIADMKLRGIDL------------SGIEVLDLRPRSG 90


>gi|138893758|ref|YP_001124211.1| DNA repair protein RadA [Geobacillus thermodenitrificans NG80-2]
 gi|134265271|gb|ABO65466.1| DNA repair protein-like protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 457

 Score = 37.0 bits (84), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 19/169 (11%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + + S+ L+  LG GG  KG +V I G    GK+TL L T AQ    G T  ++  E ++
Sbjct: 73  IETKSVELNRVLG-GGIVKGSLVLIGGDPGIGKSTLLLQTSAQLAAAGHTVLYISGEESV 131

Query: 108 DSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
             +  R  +L  +   L +      E  LE     + +     +++DS+  +  R +I  
Sbjct: 132 KQVKLRAGRLHAESHQLYV----LAEADLEYIVTAIETIQPACVIVDSIQTVY-RTDI-- 184

Query: 166 DMGESLPG--MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
               S PG   Q R  +  L K    I+++K I +FI     K G + G
Sbjct: 185 ---TSAPGSVAQVRECTAELMK----IAKTKGIAIFIVGHVTKEGAIAG 226


>gi|167770645|ref|ZP_02442698.1| hypothetical protein ANACOL_01991 [Anaerotruncus colihominis DSM
           17241]
 gi|167667240|gb|EDS11370.1| hypothetical protein ANACOL_01991 [Anaerotruncus colihominis DSM
           17241]
          Length = 468

 Score = 37.0 bits (84), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 8/105 (7%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113
           LD  LG GG   G ++ + G    GK+TL L  I Q    G    +V  E +   +  R 
Sbjct: 91  LDRVLG-GGIVAGSVMLLSGDPGIGKSTLLLQ-ICQYLCGGLKILYVSGEESARQLKLRA 148

Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            +LGV+  NL IS     E  LE     VR  + D+++IDS+  +
Sbjct: 149 NRLGVESDNLYISATTDVENVLET----VRKLSPDVVMIDSIQTM 189


>gi|297618414|ref|YP_003703573.1| DNA repair protein RadA [Syntrophothermus lipocalidus DSM 12680]
 gi|297146251|gb|ADI03008.1| DNA repair protein RadA [Syntrophothermus lipocalidus DSM 12680]
          Length = 454

 Score = 37.0 bits (84), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 15/166 (9%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSG   LD  LG GG   G +V I G    GK+TL L         GG   ++  E +  
Sbjct: 66  SSGLQELDRVLG-GGIVPGSLVLIGGDPGIGKSTLLLQAAGHIAARGGRVLYLSGEESGY 124

Query: 109 SIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
            I  R  +LG+D +++ +      EQ L++    +      ++++DS+  +       G+
Sbjct: 125 QIRMRALRLGIDSESIYL----LNEQNLDLLPEYLEETKPTVVIVDSIQTV-----FTGE 175

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           +  S+PG   +L   A R L  +++++  +  F+     K G++ G
Sbjct: 176 V-PSIPGSVGQLRECAARIL--NLAKTSGVAFFLVGHVTKEGLLAG 218


>gi|118431177|ref|NP_147464.2| hypothetical protein APE_0745.1 [Aeropyrum pernix K1]
 gi|116062501|dbj|BAA79722.2| hypothetical protein [Aeropyrum pernix K1]
          Length = 723

 Score = 37.0 bits (84), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 3/77 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E + +G  G D  L  GG P+G  V + G   +GKT  ++H   Q  + G    +V  E
Sbjct: 1   MERLRTGVEGFD-PLVAGGIPRGFFVAVVGEPGTGKTVFSIHFAYQGVREGDKVIYVTTE 59

Query: 105 HALDSIY--ARKLGVDL 119
            + +S+   A   G+DL
Sbjct: 60  ESRESVLKQAAMFGMDL 76


>gi|284166692|ref|YP_003404971.1| circadian clock protein, KaiC [Haloterrigena turkmenica DSM 5511]
 gi|284016347|gb|ADB62298.1| putative circadian clock protein, KaiC [Haloterrigena turkmenica
           DSM 5511]
          Length = 492

 Score = 37.0 bits (84), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + SG  GLD  L  GG   GR+  + G   +GKT L +H + +  +   T  F+  E + 
Sbjct: 8   IRSGVDGLDELL-CGGLVTGRMYLVQGKPGTGKTLLGMHFLEEGLRNDETVLFIHGEESR 66

Query: 108 DSIYA--RKLGVDLKN 121
           + I A    +GVD+ +
Sbjct: 67  EEILANGEAVGVDISD 82


>gi|257487866|ref|ZP_05641907.1| circadian clock gene kaiC [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331008573|gb|EGH88629.1| circadian clock protein kaiC [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 455

 Score = 37.0 bits (84), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 9/92 (9%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VSSG   LD  LG GG   G    I GP  +GK+ ++L   AQ+   G        +  +
Sbjct: 209 VSSGITELDDLLG-GGIESGSSTLILGPAGTGKSLISLVFAAQAVARGERVGLFIFDEEM 267

Query: 108 DSIYAR--KLGVDLK------NLLISQPDTGE 131
             ++ R  KLG+DL+      NL++ Q D  E
Sbjct: 268 GLLFERMLKLGIDLRALQETGNLVVEQIDAAE 299


>gi|303244732|ref|ZP_07331062.1| DNA repair and recombination protein RadA [Methanothermococcus
           okinawensis IH1]
 gi|302484866|gb|EFL47800.1| DNA repair and recombination protein RadA [Methanothermococcus
           okinawensis IH1]
          Length = 322

 Score = 37.0 bits (84), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 89/221 (40%), Gaps = 43/221 (19%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA---FVDAE 104
           +S+GS  L+  L  GG     I E  G   SGKT +A       Q     C    FVD E
Sbjct: 80  LSTGSDELNRILN-GGLESQSITEFAGVFGSGKTQIAHQACVNLQ-----CEDTIFVDNE 133

Query: 105 HALD-------SIY---------------ARKLGVD----LKNLLISQPDTGEQAL---E 135
              D       ++Y               A  LG+D    L N  +++    +  +   E
Sbjct: 134 WVSDEELANPKAVYIDTEGTFRPERITQMAEALGIDGQKVLDNTFVARAYNSDMQMLFAE 193

Query: 136 ITDMLVRSGA-VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
             + L++SG  + ++++DS+ + T R E  G     L   Q +L  + +  L        
Sbjct: 194 KIEELIKSGNNIKLVIVDSLTS-TFRNEYTGR--GKLAERQQKL-GRHMAVLNKLADLHN 249

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           CI+V  NQ+  +    FG  E   GG+ +   ++ R  +R+
Sbjct: 250 CIVVITNQVSARPDAFFGVAEQAIGGHIVGHAATFRFFLRK 290


>gi|240102166|ref|YP_002958474.1| RecA family AAA ATPase [Thermococcus gammatolerans EJ3]
 gi|239909719|gb|ACS32610.1| RecA family AAA ATPase [Thermococcus gammatolerans EJ3]
          Length = 236

 Score = 37.0 bits (84), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           +S+G  GLD  L  GG   G++  I GP  SGKTT+ +H + +  +     A+V
Sbjct: 8   ISTGIPGLD-ELIEGGLIPGKVYLITGPPGSGKTTMGMHFLIEGARKNEKVAYV 60


>gi|171680227|ref|XP_001905059.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939740|emb|CAP64966.1| unnamed protein product [Podospora anserina S mat+]
          Length = 348

 Score = 37.0 bits (84), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 93/211 (44%), Gaps = 29/211 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G + EI+G   +GK+ +  HT+A + +         G C +
Sbjct: 103 ITTGSKNLDTLLA-GGIETGSVTEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCMY 160

Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDII 149
           +D E     +     A + G+     L N+  ++    +  L++ +    ++      ++
Sbjct: 161 IDTEGTFRPVRLLAVANRYGLSGEEVLDNVAYARAYNSDHQLQLLNQAAAMMCETRFSLL 220

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           ++DS  +L  R +  G  GE L   Q  L ++ +R L          +V  NQ+  ++  
Sbjct: 221 IVDSATSLY-RTDFLG-RGE-LSSRQTHL-AKFMRTLQRLADEFGIAVVITNQVVAQVDG 276

Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
               MF   P+   GGN +   S+ R+ +++
Sbjct: 277 GPSAMFNPDPKKPIGGNIIAHASTTRISLKK 307


>gi|16605548|emb|CAC86604.1| Rad51B protein [Physcomitrella patens]
 gi|16605579|emb|CAC82997.1| Rad51B protein [Physcomitrella patens]
          Length = 342

 Score = 37.0 bits (84), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 90/219 (41%), Gaps = 47/219 (21%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS------QKTG-GTCAF 100
           +++GS   D  L  GG   G I EIYG   SGK+ +  HT+  +      Q  G G   +
Sbjct: 105 ITTGSKEFDSILE-GGIETGSITEIYGEFRSGKSQIC-HTLCVTCQLPLDQGGGEGKALY 162

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +DAE                      LD++ YAR    D +  L+         +E   M
Sbjct: 163 IDAEGTFRPQRLLQIAEKYGLNGQDVLDNVAYARAYNTDHQTKLL---------VEAASM 213

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           +  +    ++V+DS  AL  R +  G  GE L   Q  L ++ LR            +V 
Sbjct: 214 MAET-RFALMVVDSATALY-RTDYSG-RGE-LAARQFHL-AKFLRGCQKMADEFGIAVVV 268

Query: 200 INQMRMKI--GVMFGSPE-TTTGGNALKFYSSVRLDIRR 235
            NQ+  ++    MF  P+    GGN +   S+ RL +R+
Sbjct: 269 TNQVVAQVDGSAMFNGPQFKPIGGNIIAHASTTRLSVRK 307


>gi|320328961|gb|EFW84960.1| circadian clock kaiC protein [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 455

 Score = 37.0 bits (84), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 9/92 (9%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VSSG   LD  LG GG   G    I GP  +GK+ ++L   AQ+   G        +  +
Sbjct: 209 VSSGITELDDLLG-GGIESGSSTLILGPAGTGKSLISLVFAAQAVARGERVGLFIFDEEM 267

Query: 108 DSIYAR--KLGVDLK------NLLISQPDTGE 131
             ++ R  KLG+DL+      NL++ Q D  E
Sbjct: 268 GLLFERMLKLGIDLRALQETGNLVVEQIDAAE 299


>gi|71735581|ref|YP_273216.1| circadian oscillation regulator KaiC-like protein [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71556134|gb|AAZ35345.1| circadian oscillation regulator KaiC homolog [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 515

 Score = 37.0 bits (84), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 27/178 (15%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E V SG   LD  L +GG  +G    + GP  SGKTT+ L  +A +   G  C   + + 
Sbjct: 265 EPVPSGVKELDDLL-VGGPLRGTSTLVTGPAGSGKTTVTLAYLAAACARGEKCTIYEFDE 323

Query: 106 ALDSIYAR--KLGVDLK------NLLISQPD-----TGEQALEITDMLVRSGAVDIIVID 152
            + ++ +R   +G++L        L+I Q D      GE A  +   +   G+  +IV+D
Sbjct: 324 RIATLISRADSMGMELSRHVSSGQLIIQQIDPAEISPGEFAWRVRTEVEERGST-MIVVD 382

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           S         + G M  ++P  Q  ++   + +L S +S+   +   IN     +G M
Sbjct: 383 S---------LNGYMA-AMPQEQQLILQ--MHELLSYLSQLGVVTFLINPQHGLVGSM 428


>gi|320324589|gb|EFW80666.1| circadian clock kaiC protein [Pseudomonas syringae pv. glycinea
           str. B076]
          Length = 455

 Score = 37.0 bits (84), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 9/92 (9%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VSSG   LD  LG GG   G    I GP  +GK+ ++L   AQ+   G        +  +
Sbjct: 209 VSSGITELDDLLG-GGIESGSSTLILGPAGTGKSLISLVFAAQAVARGERVGLFIFDEEM 267

Query: 108 DSIYAR--KLGVDLK------NLLISQPDTGE 131
             ++ R  KLG+DL+      NL++ Q D  E
Sbjct: 268 GLLFERMLKLGIDLRALQETGNLVVEQIDAAE 299


>gi|110597444|ref|ZP_01385731.1| signal recognition particle protein [Chlorobium ferrooxidans DSM
           13031]
 gi|110340988|gb|EAT59459.1| signal recognition particle protein [Chlorobium ferrooxidans DSM
           13031]
          Length = 449

 Score = 37.0 bits (84), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 5/93 (5%)

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE----HALDSIYARKLGVDLKNLLI 124
           ++ + G + SGKTT       + +K G     V A+     A+D + A  L V++    I
Sbjct: 103 VIMVAGLQGSGKTTFCAKLALRLKKNGKNPMLVAADVYRPAAIDQLKALALQVEVPVFAI 162

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            + D  + AL+  +   RSGA D+++ID+   L
Sbjct: 163 EEQDALKAALQGLEA-ARSGARDVVIIDTAGRL 194


>gi|320325990|gb|EFW82049.1| circadian oscillation regulator KaiC-like protein [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320330382|gb|EFW86362.1| circadian oscillation regulator KaiC-like protein [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 515

 Score = 37.0 bits (84), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 27/178 (15%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E V SG   LD  L +GG  +G    + GP  SGKTT+ L  +A +   G  C   + + 
Sbjct: 265 EPVPSGVKELDDLL-VGGPLRGTSTLVTGPAGSGKTTVTLAYLAAACARGEKCTIYEFDE 323

Query: 106 ALDSIYAR--KLGVDLK------NLLISQPD-----TGEQALEITDMLVRSGAVDIIVID 152
            + ++ +R   +G++L        L+I Q D      GE A  +   +   G+  +IV+D
Sbjct: 324 RIATLISRADSMGMELSRHVSSGQLIIQQIDPAEISPGEFAWRVRTEVEERGST-MIVVD 382

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           S         + G M  ++P  Q  ++   + +L S +S+   +   IN     +G M
Sbjct: 383 S---------LNGYMA-AMPQEQQLILQ--MHELLSYLSQLGVVTFLINPQHGLVGSM 428


>gi|268679515|ref|YP_003303946.1| DNA repair protein RadA [Sulfurospirillum deleyianum DSM 6946]
 gi|268617546|gb|ACZ11911.1| DNA repair protein RadA [Sulfurospirillum deleyianum DSM 6946]
          Length = 450

 Score = 37.0 bits (84), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 13/121 (10%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           FE IE  SSG   LD+ LG GG  +G +  I G    GK+TL L       + G    +V
Sbjct: 66  FEQIERYSSGDSELDLVLG-GGIVQGSLTLIGGSPGVGKSTLLLKIAGNLAREGKKVLYV 124

Query: 102 DAEHALDSIYARKLGVDLKN---LLISQ--PDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
             E +   I  R   VD       L+S+   DT  + LE         A ++++IDS+  
Sbjct: 125 SGEESSSQIKLRANRVDSNYPTLYLLSEIRLDTIFKELE-------KHAFEVLIIDSIQT 177

Query: 157 L 157
           +
Sbjct: 178 I 178


>gi|57641977|ref|YP_184455.1| ATPase [Thermococcus kodakarensis KOD1]
 gi|57160301|dbj|BAD86231.1| ATPase, RecA superfamily [Thermococcus kodakarensis KOD1]
          Length = 233

 Score = 37.0 bits (84), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 52/133 (39%), Gaps = 22/133 (16%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV--- 101
           +E V +G  G D  L  GGF K +   I GP  SGKTT  +  +    K G   A++   
Sbjct: 6   VERVPTGIEGFD-PLIEGGFVKSKSYLITGPPGSGKTTFGVQFLVDGAKRGEKVAYISLV 64

Query: 102 -DAEHALDSI---------YARK-------LGVDLKNLLISQPDTGEQALEITDMLVRSG 144
            D E  +            Y +K       LG +L       P        I D LVR  
Sbjct: 65  QDPEEVIKDYERFDPAVWNYVQKGNLILYDLGKELWGSTAKPPQWSSVMFRIKD-LVRES 123

Query: 145 AVDIIVIDSVAAL 157
            +  +VID + A+
Sbjct: 124 NITRLVIDPLTAI 136


>gi|297180415|gb|ADI16631.1| predicted ATP-dependent serine protease [uncultured delta
           proteobacterium HF0010_01J10]
          Length = 468

 Score = 37.0 bits (84), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 9/115 (7%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           EG   + +G   LD  LG GG   G +V + G    GK+TL L    +  + G    +V 
Sbjct: 85  EGEVRMRTGLAELDTVLG-GGLVAGSLVLVGGDPGVGKSTLLLTAAERLAQRGAPILYVS 143

Query: 103 AEHALDSIY--ARKLGVDLKNL-LISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
            E ++  ++  A++LG+   +L L+S  D G       +  +RS    ++V+DSV
Sbjct: 144 GEESVQQVHLRAQRLGLGAPHLHLLSHTDFGH-----VESAIRSLKPTVVVLDSV 193


>gi|222148126|ref|YP_002549083.1| DNA repair protein RadA [Agrobacterium vitis S4]
 gi|221735114|gb|ACM36077.1| DNA repair protein [Agrobacterium vitis S4]
          Length = 466

 Score = 37.0 bits (84), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 69/163 (42%), Gaps = 14/163 (8%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           +V  KG  + L S     E    + +G   LD A G GGF +G  V I G    GK+TL 
Sbjct: 48  KVPKKGRAVTLTSLSGEIEEAPRIPTGLSELDRATG-GGFVRGSAVLIGGDPGIGKSTLL 106

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +   A   + G    +V  E A+  +   A++L     ++L++     E  L       R
Sbjct: 107 MQAAAALSRQGHRVVYVSGEEAVAQVRLRAQRLNAADTDVLLAAETNVEDILATISEGKR 166

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQAL 183
               D+++IDS+  L        D  +S PG   Q R   QA+
Sbjct: 167 P---DLVIIDSIQTLW------SDTADSAPGTVTQVRTGVQAM 200


>gi|257437552|ref|ZP_05613307.1| toprim domain protein [Faecalibacterium prausnitzii A2-165]
 gi|257199859|gb|EEU98143.1| toprim domain protein [Faecalibacterium prausnitzii A2-165]
          Length = 625

 Score = 37.0 bits (84), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 100/237 (42%), Gaps = 43/237 (18%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA-----------FVDAEHAL-DSIYA 112
           P G++  + G    GKTT AL  +A +  TGGT             +  AE  L D++  
Sbjct: 330 PFGKVTIVQGNPGEGKTTFALR-LAAACTTGGTLPGMKPLPPFQVIYQTAEDGLGDTVKP 388

Query: 113 R--KLGVDLKNLLISQPDTGEQALEITD-----MLVRSGAVDIIVIDSVAALTPRAEIEG 165
           R  +   DL  +L+   D  ++ L ++D      + ++GA  +I++D + A         
Sbjct: 389 RLIEAEADLDRVLVI--DEAKRELTLSDERIEKAITQNGA-RLIILDPIQAY-------- 437

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
            MGE     +A  +    R+L     R+ C ++ I  +        G      G  ++ F
Sbjct: 438 -MGEKTDMNRANEVRPMFRRLADVAERTGCAVILIGHLNKAA----GGQSAYRGLGSIDF 492

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVV-KNKMASPFKQVEFDIMYGEGISFFGE 281
            ++ R  +  +G +K + ++     RV V  K+ +A   K V F +    G S+ GE
Sbjct: 493 RAAAR-SVLLIGRVKREPNV-----RVIVHDKSSLAPEGKPVAFCLDPETGFSWIGE 543


>gi|296128427|ref|YP_003635677.1| DNA repair protein RadA [Cellulomonas flavigena DSM 20109]
 gi|296020242|gb|ADG73478.1| DNA repair protein RadA [Cellulomonas flavigena DSM 20109]
          Length = 473

 Score = 37.0 bits (84), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 13/141 (9%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113
           LD  LG GG   G +V + G    GK+TL L   A++ +TG    +V  E +   +  R 
Sbjct: 91  LDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLDVAARAARTGRKVLYVTGEESAAQVRLRA 149

Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            ++     +LL++     E  L I    + S   D++V+DSV   T  A++EG  G    
Sbjct: 150 GRIHALAPSLLLAS----ETDLGIVLGHIESVDPDLLVLDSVQTFT-SAQVEGSPGGV-- 202

Query: 173 GMQARLMSQALRKLTSSISRS 193
             Q R ++ AL  +T++ SR+
Sbjct: 203 -AQVREVTAAL--ITAAKSRA 220


>gi|189197611|ref|XP_001935143.1| DNA repair protein RAD51 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187981091|gb|EDU47717.1| DNA repair protein RAD51 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 341

 Score = 37.0 bits (84), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 100/221 (45%), Gaps = 34/221 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQK----TGGTCAF 100
           +S+GS  LD  LG GGF    I E++G    GKT L+ HT   I Q  K      G  A+
Sbjct: 104 ISTGSKALDAVLG-GGFQTMSISEVFGEFRCGKTQLS-HTMSVITQLPKDMGGAEGKVAY 161

Query: 101 VDA--EHALDSIYARKLGVDLK----NLLISQPDTGEQALEITDMLVR---SGAVDIIVI 151
           +       +  I A + GVD +    N+  ++    E  +E+ + +     S    +++I
Sbjct: 162 IGTFRPERIAQI-AERFGVDPETAQDNITYARAVNSEHQMELLNKVAEFFVSNEYRLLII 220

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMKIG-- 208
           DS+ AL  R +  G  GE L   Q +L +Q L KLT        + V + NQ++   G  
Sbjct: 221 DSIMALF-RVDYTG-RGE-LNERQQKL-NQFLSKLTHVAEAEFNVAVLLTNQVQSDPGAS 276

Query: 209 VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241
            +F   +     GG+ L   S+ R+ +R      RV  I+D
Sbjct: 277 ALFAGADGRKPIGGHILAHASATRILLRKGRGEERVAKIQD 317


>gi|196251132|ref|ZP_03149811.1| DNA repair protein RadA [Geobacillus sp. G11MC16]
 gi|196209373|gb|EDY04153.1| DNA repair protein RadA [Geobacillus sp. G11MC16]
          Length = 478

 Score = 37.0 bits (84), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 19/169 (11%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + + S+ L+  LG GG  KG +V I G    GK+TL L T AQ    G T  ++  E ++
Sbjct: 94  IETKSVELNRVLG-GGIVKGSLVLIGGDPGIGKSTLLLQTSAQLAAAGHTVLYISGEESV 152

Query: 108 DSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
             +  R  +L  +   L +      E  LE     + +     +++DS+  +  R +I  
Sbjct: 153 KQVKLRAGRLHAESHQLYV----LAEADLEYIVTAIETIQPACVIVDSIQTVY-RTDI-- 205

Query: 166 DMGESLPG--MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
               S PG   Q R  +  L K    I+++K I +FI     K G + G
Sbjct: 206 ---TSAPGSVAQVRECTAELMK----IAKTKGIAIFIVGHVTKEGAIAG 247


>gi|321251189|ref|XP_003191986.1| ruvB Transcription regulator component of chromatin remodeling
           complexes; Rvb2p [Cryptococcus gattii WM276]
 gi|317458454|gb|ADV20199.1| RuvB Transcription regulator component of chromatin remodeling
           complexes, putative; Rvb2p [Cryptococcus gattii WM276]
          Length = 484

 Score = 37.0 bits (84), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 15/82 (18%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT---CAFVDAE---- 104
           +LGL ++L  GG   GR + + GP  +GKT LAL   A SQ+ G     CA V +E    
Sbjct: 65  ALGLHLSLLKGGKYSGRPLLLVGPPGTGKTALAL---ALSQELGSKVPFCAMVGSEVYSG 121

Query: 105 -----HALDSIYARKLGVDLKN 121
                  L S + R +G+ +K 
Sbjct: 122 EVKKTEVLGSCFRRAIGLRIKE 143


>gi|255654641|ref|ZP_05400050.1| putative phage-related replicative helicase [Clostridium difficile
           QCD-23m63]
 gi|296449416|ref|ZP_06891197.1| probable phage-related replicative helicase [Clostridium difficile
           NAP08]
 gi|296880647|ref|ZP_06904602.1| probable phage-related replicative helicase [Clostridium difficile
           NAP07]
 gi|296261762|gb|EFH08576.1| probable phage-related replicative helicase [Clostridium difficile
           NAP08]
 gi|296428360|gb|EFH14252.1| probable phage-related replicative helicase [Clostridium difficile
           NAP07]
          Length = 433

 Score = 36.6 bits (83), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL----G 116
           IGG  KG +  I      GKT LAL  +  S K G    F+  E   + ++ R +    G
Sbjct: 178 IGGLFKGELTTIAAKSGVGKTALALQIMLNSFKQGKKTLFISREMTSEQVFMRNICRVTG 237

Query: 117 VDLKNLLISQPDTGEQAL 134
           V  +N+   + D  +  L
Sbjct: 238 VSTRNMKSKEIDENDWKL 255


>gi|326428160|gb|EGD73730.1| aqr protein [Salpingoeca sp. ATCC 50818]
          Length = 1659

 Score = 36.6 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 3/82 (3%)

Query: 72  IYGPESSGKTTLALHTIA---QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           + GP  +GKT +A+ TI+    +     T     +  AL+ ++ + + +D++   + +  
Sbjct: 859 VVGPPGTGKTDVAVQTISNLYHNHPDQRTLIVTHSNQALNQLFEKLIHLDIEERHLLRLG 918

Query: 129 TGEQALEITDMLVRSGAVDIIV 150
            GE+ LE T    R G VD ++
Sbjct: 919 RGEELLETTKDFSRYGRVDFVL 940


>gi|307595576|ref|YP_003901893.1| putative circadian clock protein KaiC [Vulcanisaeta distributa DSM
           14429]
 gi|307550777|gb|ADN50842.1| putative circadian clock protein, KaiC [Vulcanisaeta distributa DSM
           14429]
          Length = 254

 Score = 36.6 bits (83), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-QKTGGTCAFVDAE 104
           ++V +G  GLD ALG GG  +GR   I G   +GKT L+L  +     K G    +V  +
Sbjct: 6   DLVPTGIPGLDEALG-GGLIRGRTYLISGETGTGKTLLSLSFLINGIYKYGEPGIYVSVD 64

Query: 105 HALDSIY--ARKLGVDLKNL 122
              D +    R+ G DL+ L
Sbjct: 65  ETYDQLMNGVRRFGWDLEAL 84


>gi|126698203|ref|YP_001087100.1| putative phage-related replicative helicase [Clostridium difficile
           630]
 gi|254974231|ref|ZP_05270703.1| putative phage-related replicative helicase [Clostridium difficile
           QCD-66c26]
 gi|255091628|ref|ZP_05321106.1| putative phage-related replicative helicase [Clostridium difficile
           CIP 107932]
 gi|255099731|ref|ZP_05328708.1| putative phage-related replicative helicase [Clostridium difficile
           QCD-63q42]
 gi|255305616|ref|ZP_05349788.1| putative phage-related replicative helicase [Clostridium difficile
           ATCC 43255]
 gi|255313357|ref|ZP_05354940.1| putative phage-related replicative helicase [Clostridium difficile
           QCD-76w55]
 gi|255516044|ref|ZP_05383720.1| putative phage-related replicative helicase [Clostridium difficile
           QCD-97b34]
 gi|255649140|ref|ZP_05396042.1| putative phage-related replicative helicase [Clostridium difficile
           QCD-37x79]
 gi|260682319|ref|YP_003213604.1| putative phage-related replicative helicase [Clostridium difficile
           CD196]
 gi|260685918|ref|YP_003217051.1| putative phage-related replicative helicase [Clostridium difficile
           R20291]
 gi|306519254|ref|ZP_07405601.1| putative phage-related replicative helicase [Clostridium difficile
           QCD-32g58]
 gi|115249640|emb|CAJ67457.1| putative replicative helicase DnaB-like [Clostridium difficile]
 gi|260208482|emb|CBA61089.1| putative phage-related replicative helicase [Clostridium difficile
           CD196]
 gi|260211934|emb|CBE02418.1| putative phage-related replicative helicase [Clostridium difficile
           R20291]
          Length = 433

 Score = 36.6 bits (83), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL----G 116
           IGG  KG +  I      GKT LAL  +  S K G    F+  E   + ++ R +    G
Sbjct: 178 IGGLFKGELTTIAAKSGVGKTALALQIMLNSFKQGKKTLFISREMTSEQVFMRNICRVTG 237

Query: 117 VDLKNLLISQPDTGEQAL 134
           V  +N+   + D  +  L
Sbjct: 238 VSTRNMKSKEIDENDWKL 255


>gi|157363653|ref|YP_001470420.1| DNA repair protein RadA [Thermotoga lettingae TMO]
 gi|157314257|gb|ABV33356.1| DNA repair protein RadA [Thermotoga lettingae TMO]
          Length = 441

 Score = 36.6 bits (83), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +++G   LD +L  G  P G+++ + G    GK+TLAL   A   K G    +V AE ++
Sbjct: 61  LTTGFTELDASLCSGIVP-GQVLLLGGEPGVGKSTLALEICAWFSKNGYKSLYVSAEESV 119

Query: 108 D--SIYARKLGVD 118
           D  +I AR+L  +
Sbjct: 120 DQLAIRARRLACE 132


>gi|330040667|ref|XP_003239988.1| DNA repair protein Rad51 [Cryptomonas paramecium]
 gi|327206914|gb|AEA39090.1| DNA repair protein Rad51 [Cryptomonas paramecium]
          Length = 331

 Score = 36.6 bits (83), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 97/240 (40%), Gaps = 53/240 (22%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  +D  L  GG   G I E++G   +GKT +  HT+  + +         G   +
Sbjct: 94  LTTGSREIDRILK-GGIETGSITELFGEFRTGKTQIC-HTLCVTCQLSIDQGGGEGRVLY 151

Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139
           +D E                      LD+I +AR    D +  L++Q   G  A     M
Sbjct: 152 IDTEGTFRPERIVAIANRFNLNQQDVLDNIAFARAYNTDHQTELLNQA-CGMMAENRYAM 210

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           L         ++DS  AL  R +  G  GE  P  Q   M++ LR+L          +V 
Sbjct: 211 L---------IVDSATALY-RTDYTG-RGELAPRQQH--MAKFLRRLQRLADEFGIAIVI 257

Query: 200 INQMRMKI-GVMFGSPET--TTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQT 250
            NQ+  K+ G ++  P++    GGN +   S  RL ++      R   I D  ++  N+ 
Sbjct: 258 TNQVIAKVEGGVYCIPDSKKPVGGNVIAHASQTRLYLKKNKGNNRTCKIYDSPNLPSNEC 317


>gi|330878805|gb|EGH12954.1| circadian clock protein kaiC [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 494

 Score = 36.6 bits (83), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 9/92 (9%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VSSG   LD  LG GG   G    I GP  +GK+ ++L   AQ+   G        +  +
Sbjct: 248 VSSGITELDDLLG-GGIESGSSTLILGPAGTGKSLISLVFAAQAVARGERVGLFIFDEEM 306

Query: 108 DSIYAR--KLGVDLK------NLLISQPDTGE 131
             ++ R  KLG+DL+      NL++ Q D  E
Sbjct: 307 GLLFERMLKLGIDLRALQETGNLVVEQIDAAE 338


>gi|288817636|ref|YP_003431983.1| DNA repair protein [Hydrogenobacter thermophilus TK-6]
 gi|288787035|dbj|BAI68782.1| DNA repair protein [Hydrogenobacter thermophilus TK-6]
 gi|308751234|gb|ADO44717.1| DNA repair protein RadA [Hydrogenobacter thermophilus TK-6]
          Length = 442

 Score = 36.6 bits (83), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 7/117 (5%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           EG+E  S G    D A+G GG   G+++ + G    GK+TL L    +  +  G+  +V 
Sbjct: 60  EGLERKSVGFENFDRAIG-GGMVPGQVMLLAGEPGIGKSTLLLQVSDRYAQNYGSVLYVS 118

Query: 103 AEHALDSIYA--RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            E +   I    R+ GV  K++L+      E  L++   L       ++V+DS+  L
Sbjct: 119 GEESGSQIAVRGRRTGVKSKDVLVLPETRLEAVLDVAQEL----NPQLLVVDSIQTL 171


>gi|326476219|gb|EGE00229.1| DNA repair protein RAD51 [Trichophyton tonsurans CBS 112818]
 gi|326480838|gb|EGE04848.1| DNA repair protein RAD51 [Trichophyton equinum CBS 127.97]
          Length = 349

 Score = 36.6 bits (83), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 96/214 (44%), Gaps = 33/214 (15%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  L  GG   G I E++G   +GK+ +  HT+A + +         G C 
Sbjct: 102 CITTGSKQLDTLLA-GGIETGSITELFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCL 159

Query: 100 FVDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDI 148
           ++D E     +     A++ G+     L N+  ++    +  L++ +    ++      +
Sbjct: 160 YIDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSL 219

Query: 149 IVIDSVAALTPRAEIEGDMGE--SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           +++DS  +L  R +  G  GE  S     AR M + L++L      +   +V  NQ+  +
Sbjct: 220 LIVDSATSLY-RTDFSG-RGELSSRQNHLARFM-RTLQRLADEFGVA---VVITNQVVAQ 273

Query: 207 I----GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           +      MF   P+   GGN +   S+ RL +++
Sbjct: 274 VDGGPSAMFNPDPKKPIGGNIIAHASTTRLSLKK 307


>gi|217978913|ref|YP_002363060.1| Non-specific serine/threonine protein kinase [Methylocella
           silvestris BL2]
 gi|217504289|gb|ACK51698.1| Non-specific serine/threonine protein kinase [Methylocella
           silvestris BL2]
          Length = 504

 Score = 36.6 bits (83), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           +S+GS GLD  L  GG P  R+  + G   SGKTTLAL  + +    G    +V
Sbjct: 12  ISTGSAGLDAVLR-GGLPDNRVYLLEGAPGSGKTTLALRYLLEGVGRGERVLYV 64


>gi|71734418|ref|YP_274801.1| circadian clock gene kaiC [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|298487172|ref|ZP_07005221.1| Circadian clock protein KaiC [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|71554971|gb|AAZ34182.1| circadian clock gene kaiC-like protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298158196|gb|EFH99267.1| Circadian clock protein KaiC [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|330890762|gb|EGH23423.1| circadian clock protein kaiC [Pseudomonas syringae pv. mori str.
           301020]
          Length = 494

 Score = 36.6 bits (83), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 9/92 (9%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VSSG   LD  LG GG   G    I GP  +GK+ ++L   AQ+   G        +  +
Sbjct: 248 VSSGITELDDLLG-GGIESGSSTLILGPAGTGKSLISLVFAAQAVARGERVGLFIFDEEM 306

Query: 108 DSIYAR--KLGVDLK------NLLISQPDTGE 131
             ++ R  KLG+DL+      NL++ Q D  E
Sbjct: 307 GLLFERMLKLGIDLRALQETGNLVVEQIDAAE 338


>gi|289628475|ref|ZP_06461429.1| circadian clock gene kaiC [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289646787|ref|ZP_06478130.1| circadian clock gene kaiC [Pseudomonas syringae pv. aesculi str.
           2250]
          Length = 494

 Score = 36.6 bits (83), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 9/92 (9%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VSSG   LD  LG GG   G    I GP  +GK+ ++L   AQ+   G        +  +
Sbjct: 248 VSSGITELDDLLG-GGIESGSSTLILGPAGTGKSLISLVFAAQAVARGERVGLFIFDEEM 306

Query: 108 DSIYAR--KLGVDLK------NLLISQPDTGE 131
             ++ R  KLG+DL+      NL++ Q D  E
Sbjct: 307 GLLFERMLKLGIDLRALQETGNLVVEQIDAAE 338


>gi|282165194|ref|YP_003357579.1| hypothetical protein MCP_2524 [Methanocella paludicola SANAE]
 gi|282157508|dbj|BAI62596.1| hypothetical protein [Methanocella paludicola SANAE]
          Length = 254

 Score = 36.6 bits (83), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 10/115 (8%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +G  GLD   G GGF KG    + GP  +GKTT  L  +        +  FV  E   
Sbjct: 6   LKTGIPGLDKMTG-GGFLKGDTTLVTGPPGTGKTTFGLQFLMHGVLESQSGVFVTVEETP 64

Query: 108 DSIY--ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII----VIDSVAA 156
           + I   A   G DL+ L   + +   +  ++   +++SG   I+    VI+SV A
Sbjct: 65  EKIANDALNFGWDLRKL---EAEGRLRLYQLRSEMLQSGGAPIMQCLDVINSVKA 116


>gi|296815918|ref|XP_002848296.1| DNA repair protein RAD51 [Arthroderma otae CBS 113480]
 gi|238841321|gb|EEQ30983.1| DNA repair protein RAD51 [Arthroderma otae CBS 113480]
          Length = 350

 Score = 36.6 bits (83), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 97/215 (45%), Gaps = 35/215 (16%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  L  GG   G I E++G   +GK+ +  HT+A + +         G C 
Sbjct: 103 CITTGSKQLDTLLA-GGIETGSITELFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCL 160

Query: 100 FVDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEI----TDMLVRSGAVD 147
           ++D E     +     A++ G+     L N+  ++    +  L++    + M+  +    
Sbjct: 161 YIDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCET-RFS 219

Query: 148 IIVIDSVAALTPRAEIEGDMGE--SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           ++++DS  +L  R +  G  GE  S     AR M + L++L      +   +V  NQ+  
Sbjct: 220 LLIVDSATSLY-RTDFSG-RGELSSRQNHLARFM-RTLQRLADEFGVA---VVITNQVVA 273

Query: 206 KI----GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           ++      MF   P+   GGN +   S+ RL +++
Sbjct: 274 QVDGGPSAMFNPDPKKPIGGNIIAHASTTRLSLKK 308


>gi|34395788|sp|Q8PZN5|RADA_METMA RecName: Full=DNA repair and recombination protein radA
          Length = 325

 Score = 36.6 bits (83), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 92/217 (42%), Gaps = 35/217 (16%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-------QSQKTGGTCAF 100
           +++G    D  +G GG     I E+YG   SGKT +A H +A       +    GG+   
Sbjct: 82  LTTGCTEFDEMMG-GGIETQAITELYGEFGSGKTQVA-HQLAVNVQMDREHGGLGGSVII 139

Query: 101 VDAEHA------------LDSIYARKLGVD--LKNLLISQPDTGEQ-------ALEITDM 139
           +D E+             L   Y  +L  +  L+N+ +++             A+++ + 
Sbjct: 140 IDTENTFRPERITQMVNGLSEKYGMELNPEEFLQNIHVARAYNSNHQILLVDSAVDLANE 199

Query: 140 LVRSG-AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           L   G  V ++++DS+ A   RAE  G    +L   Q +L       L      + C++V
Sbjct: 200 LKEMGKPVRLLIVDSLMAHF-RAEYVGR--GTLADRQQKLNKHMHGLLRFGDLFNACVVV 256

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
             NQ+  K    FG P    GG+ +   ++ RL +R+
Sbjct: 257 -TNQVMAKPDAFFGDPTRPIGGHIVGHTATFRLYLRK 292


>gi|315053028|ref|XP_003175888.1| DNA repair protein RAD51 [Arthroderma gypseum CBS 118893]
 gi|311341203|gb|EFR00406.1| DNA repair protein RAD51 [Arthroderma gypseum CBS 118893]
          Length = 349

 Score = 36.6 bits (83), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 96/214 (44%), Gaps = 33/214 (15%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  L  GG   G I E++G   +GK+ +  HT+A + +         G C 
Sbjct: 102 CITTGSKQLDTLLA-GGIETGSITELFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCL 159

Query: 100 FVDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDI 148
           ++D E     +     A++ G+     L N+  ++    +  L++ +    ++      +
Sbjct: 160 YIDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSL 219

Query: 149 IVIDSVAALTPRAEIEGDMGE--SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           +++DS  +L  R +  G  GE  S     AR M + L++L      +   +V  NQ+  +
Sbjct: 220 LIVDSATSLY-RTDFSG-RGELSSRQNHLARFM-RTLQRLADEFGVA---VVITNQVVAQ 273

Query: 207 I----GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           +      MF   P+   GGN +   S+ RL +++
Sbjct: 274 VDGGPSAMFNPDPKKPIGGNIIAHASTTRLSLKK 307


>gi|291544174|emb|CBL17283.1| DNA repair protein RadA [Ruminococcus sp. 18P13]
          Length = 455

 Score = 36.6 bits (83), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 8/106 (7%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YA 112
           LD  LG GG  KG +V + G    GK+TL L  I Q      +  +V  E +   I   A
Sbjct: 79  LDRVLG-GGLVKGELVLLGGEPGIGKSTLLLQ-ICQYLGQNHSVLYVSGEESARQIKLRA 136

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           ++LGVD ++L +   +  E    I D +  S   D+++IDS+  ++
Sbjct: 137 QRLGVDTESLYLLTVNDAEA---ICDTIC-STEPDVVIIDSIQTMS 178


>gi|269123546|ref|YP_003306123.1| DNA repair protein RadA [Streptobacillus moniliformis DSM 12112]
 gi|268314872|gb|ACZ01246.1| DNA repair protein RadA [Streptobacillus moniliformis DSM 12112]
          Length = 448

 Score = 36.6 bits (83), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 14/132 (10%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113
            D  LG GG  +G +V I G    GK+T  L    +  K+     ++  E +   I  R 
Sbjct: 73  FDRVLG-GGLTQGEVVLITGNPGIGKSTFLLQLSNEYAKSNKVL-YISGEESTKQIKERA 130

Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            ++GV+ K++ +      E  LE  ++ + +    +++IDSV        I  +   SLP
Sbjct: 131 MRIGVNSKSIFL----LSETNLENIEVAINNSKPKVVIIDSVQT------IYSETVSSLP 180

Query: 173 GMQARLMSQALR 184
           G  +++   +LR
Sbjct: 181 GSVSQIRDCSLR 192


>gi|164686583|ref|ZP_02210611.1| hypothetical protein CLOBAR_00175 [Clostridium bartlettii DSM
           16795]
 gi|164604312|gb|EDQ97777.1| hypothetical protein CLOBAR_00175 [Clostridium bartlettii DSM
           16795]
          Length = 462

 Score = 36.6 bits (83), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 7/105 (6%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113
           LD  LG GG  KG +V + G    GK+TL +   ++   T     ++  E +   I  R 
Sbjct: 84  LDRVLG-GGIVKGSLVLVGGDPGIGKSTLLMQVSSKVANTNKKVLYISGEESESQIKMRA 142

Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            +LGV+ +NL I      E  L I +  +     ++I++DS+  +
Sbjct: 143 SRLGVNSQNLYI----FAENNLSIIEAHLEKINPELIIVDSIQTV 183


>gi|94967098|ref|YP_589146.1| putative circadian clock protein, KaiC [Candidatus Koribacter
           versatilis Ellin345]
 gi|94549148|gb|ABF39072.1| putative circadian clock protein, KaiC [Candidatus Koribacter
           versatilis Ellin345]
          Length = 532

 Score = 36.6 bits (83), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 18/142 (12%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + V SG   LD  LG GG   G    + GP   GK+T+AL     + + G T AF   + 
Sbjct: 271 KAVKSGLDELDKLLG-GGLDTGTSTLLLGPAGCGKSTIALRYAKSAAEEGNTAAFFAFDE 329

Query: 106 ALDSIYARKLGVDLK--------NLLISQPDTGE----QALEITDMLVRSGAVDIIVIDS 153
            L ++  R  G+ L+         L + Q D  E    Q +     L  +  + ++VIDS
Sbjct: 330 LLATLTKRGKGLGLEVEQHVHSGKLSLRQVDAAELSPGQLVHEIRQLAETKELKLLVIDS 389

Query: 154 VAALTPRAEIEGDMGESLPGMQ 175
           +        + G  GE    MQ
Sbjct: 390 LNGF-----LNGMPGEKFLTMQ 406


>gi|294851827|ref|ZP_06792500.1| DNA repair protein RadA [Brucella sp. NVSL 07-0026]
 gi|294820416|gb|EFG37415.1| DNA repair protein RadA [Brucella sp. NVSL 07-0026]
          Length = 467

 Score = 36.6 bits (83), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 12/160 (7%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG  + L S     E    + SG   LD   G GGF +G  + I G    GK+TL     
Sbjct: 54  KGRAVALTSLSGEIEDAPRIISGISELDRVTG-GGFVRGSALLIGGDPGIGKSTLLTQAA 112

Query: 89  AQSQKTGGTCAFVDAEHALDSIY--ARKLGVDLKNL-LISQPDTGEQALEITDMLVRSGA 145
           A     G    +V  E A+  I+  A++LGV    + L ++ +  +    I+     S  
Sbjct: 113 AALSNRGHRIVYVSGEEAVAQIHLRAQRLGVAASAVELAAETNVEDIIATISSDNSGSKR 172

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQAL 183
            D+++IDS+  L        DM +S PG   Q R  +QA+
Sbjct: 173 PDLVIIDSIQTLWT------DMADSAPGTVTQVRSSAQAM 206


>gi|83590889|ref|YP_430898.1| ABC transporter related [Moorella thermoacetica ATCC 39073]
 gi|83573803|gb|ABC20355.1| ABC transporter related protein [Moorella thermoacetica ATCC 39073]
          Length = 506

 Score = 36.6 bits (83), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 6/89 (6%)

Query: 36  GSQGSIFEGI-EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           GS+   FEG+  +  SG    +++L +    KG +V I GP  SGKTTL  HT+   +  
Sbjct: 256 GSRELFFEGVTHLFDSGHGIKNVSLEVC---KGEVVAIMGPNGSGKTTLLKHTVGLLRPQ 312

Query: 95  GGTCAFVDAEHALDSI--YARKLGVDLKN 121
            G     + E +   +   A+K+G+  +N
Sbjct: 313 EGRVWLRETETSRLPVGLLAQKIGMLFQN 341


>gi|327299920|ref|XP_003234653.1| DNA repair protein RAD51 [Trichophyton rubrum CBS 118892]
 gi|326463547|gb|EGD89000.1| DNA repair protein RAD51 [Trichophyton rubrum CBS 118892]
          Length = 349

 Score = 36.6 bits (83), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 96/214 (44%), Gaps = 33/214 (15%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  L  GG   G I E++G   +GK+ +  HT+A + +         G C 
Sbjct: 102 CITTGSKQLDTLLA-GGIETGSITELFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCL 159

Query: 100 FVDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDI 148
           ++D E     +     A++ G+     L N+  ++    +  L++ +    ++      +
Sbjct: 160 YIDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSL 219

Query: 149 IVIDSVAALTPRAEIEGDMGE--SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           +++DS  +L  R +  G  GE  S     AR M + L++L      +   +V  NQ+  +
Sbjct: 220 LIVDSATSLY-RTDFSG-RGELSSRQNHLARFM-RTLQRLADEFGVA---VVITNQVVAQ 273

Query: 207 I----GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           +      MF   P+   GGN +   S+ RL +++
Sbjct: 274 VDGGPSAMFNPDPKKPIGGNIIAHASTTRLSLKK 307


>gi|192361779|ref|YP_001981759.1| DNA repair protein RadA [Cellvibrio japonicus Ueda107]
 gi|190687944|gb|ACE85622.1| DNA repair protein RadA [Cellvibrio japonicus Ueda107]
          Length = 456

 Score = 36.6 bits (83), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 8/111 (7%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSG+   D  LG GGF  G +V I G   +GK+TL L T+    +T  +  +V  E +L 
Sbjct: 77  SSGTGEFDRVLG-GGFVPGSVVLIGGNPGAGKSTLLLQTLCNLART-MSALYVTGEESLQ 134

Query: 109 SI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            +   A++LG+    L +   +T  +A+  T   V+     ++VIDS+  +
Sbjct: 135 QVAMRAQRLGLPTDKLQMLS-ETSVEAICATAQQVQP---KVMVIDSIQVM 181


>gi|330888799|gb|EGH21460.1| circadian oscillation regulator KaiC-like protein [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 515

 Score = 36.6 bits (83), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 27/178 (15%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E V SG   LD  L +GG  +G    + GP  SGKTT+ L  +A +   G  C   + + 
Sbjct: 265 EPVPSGVKELDDFL-VGGPLRGTSTLVTGPAGSGKTTVTLAYLAAACARGEKCTIYEFDE 323

Query: 106 ALDSIYAR--KLGVDLK------NLLISQPD-----TGEQALEITDMLVRSGAVDIIVID 152
            + ++ +R   +G++L        L+I Q D      GE A  +   +   G+  +IV+D
Sbjct: 324 RIATLISRADSMGMELSRHVSSGQLIIQQIDPAEISPGEFAWRVRTEVEERGST-MIVVD 382

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           S         + G M  ++P  Q  ++   + +L S +S+   +   IN     +G M
Sbjct: 383 S---------LNGYMA-AMPQEQQLILQ--MHELLSYLSQLGVVTFLINPQHGLVGSM 428


>gi|302660598|ref|XP_003021977.1| hypothetical protein TRV_03925 [Trichophyton verrucosum HKI 0517]
 gi|291185899|gb|EFE41359.1| hypothetical protein TRV_03925 [Trichophyton verrucosum HKI 0517]
          Length = 388

 Score = 36.6 bits (83), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 96/214 (44%), Gaps = 33/214 (15%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99
            +++GS  LD  L  GG   G I E++G   +GK+ +  HT+A + +         G C 
Sbjct: 141 CITTGSKQLDTLLA-GGIETGSITELFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCL 198

Query: 100 FVDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDI 148
           ++D E     +     A++ G+     L N+  ++    +  L++ +    ++      +
Sbjct: 199 YIDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSL 258

Query: 149 IVIDSVAALTPRAEIEGDMGE--SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           +++DS  +L  R +  G  GE  S     AR M + L++L      +   +V  NQ+  +
Sbjct: 259 LIVDSATSLY-RTDFSG-RGELSSRQNHLARFM-RTLQRLADEFGVA---VVITNQVVAQ 312

Query: 207 I----GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
           +      MF   P+   GGN +   S+ RL +++
Sbjct: 313 VDGGPSAMFNPDPKKPIGGNIIAHASTTRLSLKK 346


>gi|283852950|ref|ZP_06370209.1| DNA repair protein RadA [Desulfovibrio sp. FW1012B]
 gi|283571640|gb|EFC19641.1| DNA repair protein RadA [Desulfovibrio sp. FW1012B]
          Length = 447

 Score = 36.6 bits (83), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 69/153 (45%), Gaps = 15/153 (9%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           GLD  LG GG   G  V + G    GK+TL L     +   G    ++ AE +L  + AR
Sbjct: 75  GLDRVLG-GGLTPGGAVLLGGEPGIGKSTLLLQLAGLAAVAGRRVVYLSAEESLPQLKAR 133

Query: 114 --KLGVDLKNLL-ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
             +LGV  + LL  S  D G       D+L  + A D++++DSV  +   A IEG  G  
Sbjct: 134 AERLGVLHEGLLAASTTDAGAA----VDVLGATPAPDLVIVDSVQTMH-MAGIEGAAGSV 188

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
               Q R ++ A      +  R +  LV +  +
Sbjct: 189 ---SQVRSVAAA---CVEAAKRGQACLVLVGHV 215


>gi|307153259|ref|YP_003888643.1| putative circadian clock protein KaiC [Cyanothece sp. PCC 7822]
 gi|306983487|gb|ADN15368.1| putative circadian clock protein, KaiC [Cyanothece sp. PCC 7822]
          Length = 519

 Score = 36.6 bits (83), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+ + +G  G D  L  GG PKGR   + G   S KT  A   +A+  K G    FV  E
Sbjct: 23  IQKLETGIPGFDF-LSEGGLPKGRATLVAGTAGSAKTVFACQFLAEGIKRGENGVFVTFE 81

Query: 105 HALDSIYARKLG 116
               ++    LG
Sbjct: 82  EPPKALRKNMLG 93


>gi|52549421|gb|AAU83270.1| recombinase [uncultured archaeon GZfos27B6]
          Length = 315

 Score = 36.6 bits (83), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 92/211 (43%), Gaps = 29/211 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-----QSQKTG--GTCAF 100
           +++GS   D  LG GG     + E YG   SGKT +A H +A       +K G  G+   
Sbjct: 79  LTTGSKSFDELLG-GGLETQAMTEFYGEFGSGKTQIA-HQLAVNVQLPPEKGGLNGSAIM 136

Query: 101 VDAEHAL------DSIYARKLGVD--LKNLLISQPDTG-------EQALEIT-DMLVRSG 144
           VD E+        D     +L  +  LKN+ +++           E+A EI  D+     
Sbjct: 137 VDTENTFRPERIKDMAEGAELDYEDVLKNIHVARAYNSNHQILLVEKAKEIAEDLKDTEK 196

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            V +++IDS  A   R+E    +G      + + +++ L         +  +++  NQ+ 
Sbjct: 197 PVRLMIIDSATAHF-RSEY---VGRGTLADRQQKINRHLHDALRFADLNNAVIMITNQVM 252

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           ++    FG P    GG+ +   ++ R+ +R+
Sbjct: 253 VRPDAFFGDPTRPIGGHIVGHTATFRIYLRK 283


>gi|313217208|emb|CBY38360.1| unnamed protein product [Oikopleura dioica]
          Length = 338

 Score = 36.6 bits (83), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 85/206 (41%), Gaps = 23/206 (11%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           +++GS   D  L  GG   G I E++G   +GK+ L +     +Q         G   ++
Sbjct: 102 ITTGSKEFDRMLA-GGIETGSITELFGEFRTGKSQLCMTLAVTAQLPVDLGGGEGKALYI 160

Query: 102 DAEHALDS----IYARKLGVDLKNLLIS-------QPDTGEQALEITDMLVRSGAVDIIV 150
           D E           + + G+  K++L +         D     L     ++      I++
Sbjct: 161 DTEGTFRPERLLAISERYGLSGKDVLDNVAVARAFSTDHQMTMLHTCAAMMTESRYSIMI 220

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-GV 209
           +DS+ AL  R++  G  GE L   Q  L  + LR L          +V  NQ+   + G+
Sbjct: 221 VDSIMALY-RSDYSGR-GE-LAARQMHL-GKFLRGLLKLADTFGVAIVITNQVTANVDGM 276

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRR 235
           M G  +T  GGN L   S  R+ +++
Sbjct: 277 MMGDNQTPVGGNILAHASCTRIKMKK 302


>gi|330869969|gb|EGH04678.1| circadian clock protein kaiC [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 496

 Score = 36.6 bits (83), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 9/92 (9%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VSSG   LD  LG GG   G    I GP  +GK+ ++L   AQ+   G        +  +
Sbjct: 250 VSSGITELDDLLG-GGIESGSSTLILGPAGTGKSLISLVFAAQAVARGERVGLFIFDEEM 308

Query: 108 DSIYAR--KLGVDLK------NLLISQPDTGE 131
             ++ R  KLG+DL+      NL++ Q D  E
Sbjct: 309 GLLFERMLKLGIDLRALQETGNLVVEQIDAAE 340


>gi|189210367|ref|XP_001941515.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187977608|gb|EDU44234.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 460

 Score = 36.6 bits (83), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 7/87 (8%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSL-GLDIALGIGGFPKGRIVEIYGPE 76
           +A   +Q+++ +GA  +  S G I +  +V+S  SL G D++   GG+ +G++ E++GP 
Sbjct: 19  SASQALQKLHARGA--RTVSTG-ITQLDKVLSPLSLPGHDVS---GGYTRGKVTEVFGPS 72

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDA 103
             GKT   +     + + G    +VDA
Sbjct: 73  GVGKTAFGIQAAVSALREGQQVIWVDA 99


>gi|170290359|ref|YP_001737175.1| ATPase [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170174439|gb|ACB07492.1| RecA-superfamily ATPase [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 260

 Score = 36.6 bits (83), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 3/76 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G   LD  L  GG P+G +V I G   +GK+ L  H   +  + G    +V  E + 
Sbjct: 4   LSTGIRKLDEMLE-GGIPRGFLVAITGEPGTGKSILCQHFAWRGYEEGDKVIYVTTEESR 62

Query: 108 DSIY--ARKLGVDLKN 121
           +SI   A  LG+D++ 
Sbjct: 63  NSILEQAELLGMDIRK 78


>gi|254173123|ref|ZP_04879796.1| RecA family AAA ATPase [Thermococcus sp. AM4]
 gi|214032532|gb|EEB73361.1| RecA family AAA ATPase [Thermococcus sp. AM4]
          Length = 235

 Score = 36.6 bits (83), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           +S+G  GLD  L  GG   G++  I GP  SGKTT+ +H +    K     A+V
Sbjct: 7   ISTGISGLD-ELIEGGLIPGKVYLITGPPGSGKTTMGMHFLIDGAKRNEKVAYV 59


>gi|171186444|ref|YP_001795363.1| putative circadian clock protein, KaiC [Thermoproteus neutrophilus
           V24Sta]
 gi|170935656|gb|ACB40917.1| putative circadian clock protein, KaiC [Thermoproteus neutrophilus
           V24Sta]
          Length = 258

 Score = 36.6 bits (83), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQKTGGTCAFVDAE 104
           E V +G  GLD  LG GGF +GR   I G   + KT  AL  + Q + K G    ++  +
Sbjct: 9   ETVPTGVEGLDTVLG-GGFIRGRTYLISGETGTAKTLTALTFLIQGALKYGEPGIYISVD 67

Query: 105 HALDSIY--ARKLGVDLKNL 122
              +     AR+ G D++ L
Sbjct: 68  ETYEQFVEGARRFGWDIEEL 87


>gi|163791196|ref|ZP_02185613.1| predicted repair protein [Carnobacterium sp. AT7]
 gi|159873527|gb|EDP67614.1| predicted repair protein [Carnobacterium sp. AT7]
          Length = 456

 Score = 36.6 bits (83), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 8/116 (6%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113
           L+  LG GG   G +V I G    GK+TL L   AQ    GG   +V  E +   I  R 
Sbjct: 79  LNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSAQLNLAGGKVLYVSGEESASQIKMRA 137

Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +LGV   +  I  P+T   A+  T   +     D ++IDS+  +  + +I G +G
Sbjct: 138 IRLGVKGSDFYI-YPETDMGAIRQT---IEDLKPDYVIIDSIQTMN-QPDITGAIG 188


>gi|170044836|ref|XP_001850037.1| DNA-repair protein XRCC3 [Culex quinquefasciatus]
 gi|167867962|gb|EDS31345.1| DNA-repair protein XRCC3 [Culex quinquefasciatus]
          Length = 281

 Score = 36.6 bits (83), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 69/172 (40%), Gaps = 53/172 (30%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALH---TIAQSQKTGGTCAFVDAEHAL---- 107
           LD  L  GG     +VEI G   SGKT LALH   T  Q         ++  EH      
Sbjct: 37  LDRLLCAGGISARGVVEIAGDAGSGKTQLALHLALTCQQQCPERRGVVYISTEHPFPSKR 96

Query: 108 ----------------------DSIYARKL----GVDL---KNLLISQPDTGEQALE--I 136
                                 D+I+   L    G+DL   +++LI+       ALE  I
Sbjct: 97  LVQMEQTLRNSSGVGHEVGKYSDNIFVEHLNNPVGLDLIYFEDVLINN-----SALEQCI 151

Query: 137 TD---MLVRSGAVDIIVIDSVAAL-------TPRAEIEGDMGESLPGMQARL 178
           TD   +L+ +  + ++VIDS+AA+         RAE    +  SL  +Q R 
Sbjct: 152 TDRLPVLLENNPIRLLVIDSIAAVYADEEDYVERAESFRRLVHSLHALQERF 203


>gi|127513030|ref|YP_001094227.1| hypothetical protein Shew_2102 [Shewanella loihica PV-4]
 gi|126638325|gb|ABO23968.1| hypothetical protein Shew_2102 [Shewanella loihica PV-4]
          Length = 276

 Score = 36.6 bits (83), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 11/135 (8%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIY-GPESSGKTTLAL----HTIAQSQKTGGTCAFVD 102
           + SG   L+  LG+GG+P   + EI+   E  G+ +LAL      I +  + G     V 
Sbjct: 30  LDSGYPELNRHLGLGGWPSQGLCEIFCSSEGIGELSLALPLMRRLIPRQSREGSAAGLVS 89

Query: 103 AEHALDSIYARKL---GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI---DSVAA 156
                   Y + L   G+D+  LL     T ++ L   + ++ SGA  +++    D   +
Sbjct: 90  LVAPPHVPYPQSLAMQGIDVSRLLWVDTQTPKEQLWALEQILTSGASPLVLCWLEDLSVS 149

Query: 157 LTPRAEIEGDMGESL 171
              R ++  + GESL
Sbjct: 150 QARRLQLACEKGESL 164


>gi|147921245|ref|YP_684941.1| hypothetical protein RCIX115 [uncultured methanogenic archaeon
           RC-I]
 gi|110620337|emb|CAJ35615.1| conserved hypothetical protein [uncultured methanogenic archaeon
           RC-I]
          Length = 231

 Score = 36.6 bits (83), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++++S+G  GLD  L  GGFP+  ++ + G   +GK+TLAL  +    K G    ++  E
Sbjct: 1   MKLLSTGVQGLDELLQ-GGFPEKHMIVVVGGMGTGKSTLALQFLVNGLKNGEKSVYMSLE 59

Query: 105 HALDSIY--ARKLGVDLKNLL 123
                I   A   G DL+  +
Sbjct: 60  ERESEIVESAEGYGWDLQTYI 80


>gi|87199973|ref|YP_497230.1| DNA repair protein RadA [Novosphingobium aromaticivorans DSM 12444]
 gi|87135654|gb|ABD26396.1| DNA repair protein RadA [Novosphingobium aromaticivorans DSM 12444]
          Length = 455

 Score = 36.6 bits (83), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 13/119 (10%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113
            D ALG GG   G  + + G    GK+TL L   A+   +GG+  ++  E A D +  R 
Sbjct: 77  FDRALG-GGLVPGCAILMGGDPGIGKSTLLLQASAKVALSGGSAVYISGEEASDQVRLRA 135

Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD---IIVIDSVAALTPRAEIEGDMG 168
            +LG+    +L++       A  + D+L   G ++   ++VIDS+  +    +IEG  G
Sbjct: 136 DRLGLGKAPILLA------AATSVRDILTTLGNMEPPSLVVIDSIQTMH-SDQIEGAPG 187


>gi|260903726|ref|ZP_05912048.1| hypothetical protein BlinB_00225 [Brevibacterium linens BL2]
          Length = 229

 Score = 36.6 bits (83), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 9/92 (9%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD-AEHALDSIYARKLGVDLK 120
           GG P+G IV + G +S    + AL TIA + +    CA +   E A+ SI    LGVDL 
Sbjct: 45  GGLPRGEIVTLTGGQS---LSCALATIAMATQEQKWCAGIGLGEPAVSSIA--DLGVDLD 99

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           +  ++     E  L +  +L+ S   D++V+D
Sbjct: 100 H-FVNLVTPAEDWLRVASILIES--FDVLVVD 128


>gi|298675006|ref|YP_003726756.1| putative circadian clock protein KaiC [Methanohalobium evestigatum
           Z-7303]
 gi|298287994|gb|ADI73960.1| putative circadian clock protein, KaiC [Methanohalobium evestigatum
           Z-7303]
          Length = 238

 Score = 36.6 bits (83), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YARKLGVDL 119
           GGFPKG+ + I G   +GKT   L  + ++   G  C  V  E   + I  +A  L + L
Sbjct: 17  GGFPKGKGIVITGSSGTGKTIFGLQFLNKACHDGKKCTIVATEETPEDILTHADVLNLSL 76

Query: 120 KNL 122
           ++ 
Sbjct: 77  RDF 79


>gi|116245799|ref|XP_001230756.1| AGAP003791-PA [Anopheles gambiae str. PEST]
 gi|116130977|gb|EAU77376.1| AGAP003791-PA [Anopheles gambiae str. PEST]
          Length = 290

 Score = 36.6 bits (83), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALH---TIAQSQKTGG 96
          LD+ALG  G P+G I E+ GP  SGKT L L     +   Q+ GG
Sbjct: 26 LDLALG-SGIPEGMITELCGPPGSGKTQLCLQLAVNVQIPQQLGG 69


>gi|147918711|ref|YP_687566.1| KaiC family ATPase [uncultured methanogenic archaeon RC-I]
 gi|110622962|emb|CAJ38240.1| putative ATPase (KaiC family) [uncultured methanogenic archaeon
          RC-I]
          Length = 254

 Score = 36.6 bits (83), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL-HTIAQSQK 93
          +E V +G  GLDI L  GGF KG  + I G   SGKT LAL +   Q+Q+
Sbjct: 10 LEQVKTGVDGLDILLS-GGFVKGSTILISGSYGSGKTLLALQYAFYQAQR 58


>gi|298714477|emb|CBJ27499.1| Rad51 DNA recombinase 2 [Ectocarpus siliculosus]
          Length = 335

 Score = 36.6 bits (83), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 61/148 (41%), Gaps = 30/148 (20%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS---QKTGGT-----CA 99
           V++G   LD AL  GGFP G I E+ GP   GKT   L   AQ+    K GG        
Sbjct: 85  VATGIQPLDDALQ-GGFPTGMITELVGPAGIGKTQTCLQVAAQACLPAKLGGLGEDAGVV 143

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDT---GEQALEITDMLVRSGAVDIIVIDSVAA 156
           ++D E        RK   D    + S+      GE + E   M      V +  +D+ AA
Sbjct: 144 YLDTE--------RKFSPDRLVEIASERHPGHYGEFSTEKGSMERLLNQVTVFPVDNSAA 195

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALR 184
           L  R E           +QAR++   +R
Sbjct: 196 LVDRLET----------LQARMIESNVR 213


>gi|298676052|ref|YP_003727802.1| DNA repair and recombination protein RadA [Methanohalobium
           evestigatum Z-7303]
 gi|298289040|gb|ADI75006.1| DNA repair and recombination protein RadA [Methanohalobium
           evestigatum Z-7303]
          Length = 325

 Score = 36.6 bits (83), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 86/203 (42%), Gaps = 34/203 (16%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIA-----QSQKTG--GTCAFVDAEHALDSIYARK 114
           GG     I E+YG   SGKT +A H +A      +++ G  G+  F+D E+       ++
Sbjct: 95  GGIDTQSITELYGEFGSGKTQIA-HQLAVNVQLPNEQGGLNGSVIFIDTENTFRPERIKQ 153

Query: 115 L--------GVD------LKNLLISQPDTGEQALEITDMLVR--------SGAVDIIVID 152
           +         +D      LKN+ +++       + + D  +            V ++++D
Sbjct: 154 MVQGASEHHNIDYDPEEFLKNIHVARAYNSNHQILLMDSAMELAEESKNWEQPVRLLIVD 213

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           S+ A   RAE  G    +L   Q +L ++ L  L         +++  NQ+  K    FG
Sbjct: 214 SLTAHF-RAEYIGR--GTLADRQQKL-NKHLHALQRFSDLYNAVIIVTNQVMSKPDAFFG 269

Query: 213 SPETTTGGNALKFYSSVRLDIRR 235
            P    GG+ +   ++ R+ +R+
Sbjct: 270 DPTKPIGGHIIGHTATFRMYLRK 292


>gi|119487588|ref|ZP_01621198.1| hypothetical protein L8106_27067 [Lyngbya sp. PCC 8106]
 gi|119455757|gb|EAW36893.1| hypothetical protein L8106_27067 [Lyngbya sp. PCC 8106]
          Length = 575

 Score = 36.6 bits (83), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 37/79 (46%), Gaps = 6/79 (7%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI----AQSQKTGGTCAFVDA 103
            S+G  GLD  + +GG PKGR   + G    GKT LA+  +     Q  + G   AF + 
Sbjct: 18  CSTGINGLD-EITLGGLPKGRPTLVCGTAGCGKTLLAMEFLVRGAVQYDEPGVFIAFEET 76

Query: 104 EHALDSIYARKLGVDLKNL 122
              L    A  LG DLK L
Sbjct: 77  AEELTENVA-SLGWDLKQL 94


>gi|103487290|ref|YP_616851.1| DNA repair protein RadA [Sphingopyxis alaskensis RB2256]
 gi|98977367|gb|ABF53518.1| DNA repair protein RadA [Sphingopyxis alaskensis RB2256]
          Length = 453

 Score = 36.6 bits (83), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 56/133 (42%), Gaps = 15/133 (11%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
            D ALG GGF  G    I G    GK+TL L    +  K G +  ++  E A   +  R 
Sbjct: 77  FDRALG-GGFVAGSATLIGGDPGIGKSTLLLQAAGRLAKAGRSVVYISGEEAAAQVRLRA 135

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGA--VDIIVIDSVAALTPRAEIEGDMGESLP 172
             + L +     P     A  + D+L   G+   D +VIDS+  +        D+ +S P
Sbjct: 136 QRLGLGD----APVALASATSVRDILATLGSRTADFVVIDSIQTM------HSDLIDSAP 185

Query: 173 GM--QARLMSQAL 183
           G   Q R  +Q L
Sbjct: 186 GTVSQVRASAQEL 198


>gi|313214368|emb|CBY42765.1| unnamed protein product [Oikopleura dioica]
 gi|313239465|emb|CBY14399.1| unnamed protein product [Oikopleura dioica]
          Length = 340

 Score = 36.6 bits (83), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 85/206 (41%), Gaps = 23/206 (11%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           +++GS   D  L  GG   G I E++G   +GK+ L +     +Q         G   ++
Sbjct: 102 ITTGSKEFDRMLA-GGIETGSITELFGEFRTGKSQLCMTLAVTAQLPVDLGGGEGKALYI 160

Query: 102 DAEHALDS----IYARKLGVDLKNLLIS-------QPDTGEQALEITDMLVRSGAVDIIV 150
           D E           + + G+  K++L +         D     L     ++      I++
Sbjct: 161 DTEGTFRPERLLAISERYGLSGKDVLDNVAVARAFSTDHQMTMLHTCAAMMTESRYSIMI 220

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-GV 209
           +DS+ AL  R++  G  GE L   Q  L  + LR L          +V  NQ+   + G+
Sbjct: 221 VDSIMALY-RSDYSGR-GE-LAARQMHL-GKFLRGLLKLADTFGVAIVITNQVTANVDGM 276

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRR 235
           M G  +T  GGN L   S  R+ +++
Sbjct: 277 MMGDNQTPVGGNILAHASCTRIKMKK 302


>gi|197120361|ref|YP_002140788.1| DNA repair protein RadA [Geobacter bemidjiensis Bem]
 gi|197089721|gb|ACH40992.1| DNA repair protein RadA [Geobacter bemidjiensis Bem]
          Length = 452

 Score = 36.6 bits (83), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 8/108 (7%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSGS   D  LG GGF  G ++ I G   +GK+T+ L T+  +  +     +V  E +L 
Sbjct: 73  SSGSEEFDRVLG-GGFVPGSVILIGGDPGAGKSTILLQTMCYAAAS-KEVLYVSGEESLQ 130

Query: 109 SI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
            I   AR+L + L  + +    + E  LE      +S   +++VIDS+
Sbjct: 131 QIAGRARRLQLPLDRVKMLAESSVEGVLEAA----KSERPEVVVIDSI 174


>gi|124028477|ref|YP_001013797.1| DNA repair and recombination protein radB [Hyperthermus butylicus
           DSM 5456]
 gi|123979171|gb|ABM81452.1| DNA repair and recombination protein radB [Hyperthermus butylicus
           DSM 5456]
          Length = 200

 Score = 36.6 bits (83), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 2/86 (2%)

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGP  SGKT LAL   A  Q   G C ++  E       A KL +    L++ Q     
Sbjct: 19  VYGPAGSGKTLLALELTAH-QCRSGKCLYITTEGVQFLERAAKLKLSADQLVVLQVFDYL 77

Query: 132 QALEITDMLVRSGAVDIIVIDSVAAL 157
             L I + L +    +I+V+DSV+++
Sbjct: 78  DLLHIVN-LRQLPLYNIVVLDSVSSI 102


>gi|195037391|ref|XP_001990144.1| GH18396 [Drosophila grimshawi]
 gi|193894340|gb|EDV93206.1| GH18396 [Drosophila grimshawi]
          Length = 352

 Score = 36.6 bits (83), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 92/211 (43%), Gaps = 28/211 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GTCA 99
           ++++GS  LD  LG GG   G I EI+G    GKT +  HT+A       SQ  G G   
Sbjct: 111 MLTTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQIC-HTLAVTCQLPISQNGGEGKAL 168

Query: 100 FVDAE--------HALDSIYARKLGVDLKNLLISQPDTGEQALEITDM---LVRSGAVDI 148
           ++D E         A+   Y+ +    L N+  ++    +Q  ++  M   ++      +
Sbjct: 169 YIDTEGTFRPERLSAIAQRYSMEEADVLDNVACARAHNTDQQTKLVQMAAGMMFESRYAL 228

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI- 207
           I++DS  AL  R+E  G  GE L   Q  L    LR L          +V  NQ+  ++ 
Sbjct: 229 IIVDSAMALY-RSEYIG-RGE-LAARQNHL-GLFLRMLQRLADEFGVAVVITNQVTAQVD 284

Query: 208 --GVMF-GSPETTTGGNALKFYSSVRLDIRR 235
               MF    +   GG+ +   S+ RL +R+
Sbjct: 285 GGASMFQADAKKPIGGHIMAHASTTRLYLRK 315


>gi|195395050|ref|XP_002056149.1| GJ10382 [Drosophila virilis]
 gi|194142858|gb|EDW59261.1| GJ10382 [Drosophila virilis]
          Length = 351

 Score = 36.6 bits (83), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 94/211 (44%), Gaps = 28/211 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GTCA 99
           ++++GS  LD  LG GG   G I EI+G    GKT +  HT+A       SQ  G G   
Sbjct: 110 MLTTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQIC-HTLAVTCQLPISQNGGEGKAL 167

Query: 100 FVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDI 148
           ++D E        S  A++  ++    L N+  ++    +Q  ++  M   ++      +
Sbjct: 168 YIDTEGTFRPERLSAIAQRYNMEEADVLDNVACARAHNTDQQTKLVQMAAGMMFESRYAL 227

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI- 207
           I++DS  AL  R+E  G  GE L   Q  L    LR L          +V  NQ+  ++ 
Sbjct: 228 IIVDSAMALY-RSEYIG-RGE-LAARQNHL-GLFLRMLQRLADEFGVAVVITNQVTAQVD 283

Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
               MF +  +   GG+ +   S+ RL +R+
Sbjct: 284 GGASMFAADAKKPIGGHIMAHASTTRLYLRK 314


>gi|328874904|gb|EGG23269.1| putative DNA repair protein [Dictyostelium fasciculatum]
          Length = 476

 Score = 36.2 bits (82), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 12/86 (13%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLG--------SQGSIFEGIEVVSSGSLGLDIALGI 61
           +DK KA+   L+   R Y    +  L         SQ        V+ + S+ LD  L  
Sbjct: 84  IDKIKAVHEELA---RTYAFSPVCALDMYQDKLQQSQQLCNNNNNVLETKSI-LDRLLED 139

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHT 87
           GG  +G I+EI G   SGKT +A+HT
Sbjct: 140 GGLVRGEIIEIVGDTGSGKTQIAMHT 165


>gi|312114268|ref|YP_004011864.1| circadian clock protein, KaiC [Rhodomicrobium vannielii ATCC 17100]
 gi|311219397|gb|ADP70765.1| putative circadian clock protein, KaiC [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 495

 Score = 36.2 bits (82), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF--VDAE 104
           V+ + S  L+  LG GG  +G    I GP  +GKT LA+  IA + K G   A    D E
Sbjct: 249 VLQTESKELNTLLG-GGIERGSSTLISGPSGTGKTILAISFIAAAIKRGECAAMFIFDEE 307

Query: 105 HALDSIYARKLGVDLKNLLIS 125
             L    A+ LG DL+ ++ S
Sbjct: 308 LGLLFYRAKALGFDLEAMIRS 328


>gi|188590035|ref|YP_001919646.1| DNA repair protein RadA [Clostridium botulinum E3 str. Alaska E43]
 gi|188500316|gb|ACD53452.1| DNA repair protein RadA [Clostridium botulinum E3 str. Alaska E43]
          Length = 455

 Score = 36.2 bits (82), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 7/114 (6%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E   +G   L+  LG GG  KG +  I G    GK+TL L T        G   +V  E 
Sbjct: 70  ERYDTGIRELNRVLG-GGLVKGSLTLISGDPGIGKSTLLLQTANNIALKYGKVLYVSGEE 128

Query: 106 ALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           + + I  R  +LGV+ +NL I      E  L+   + +     + ++IDS+  +
Sbjct: 129 SEEQIKIRGDRLGVNSENLFI----ISETNLDAISIYIEQINPNFVIIDSIQTV 178


>gi|58039401|ref|YP_191365.1| DNA repair protein RadA [Gluconobacter oxydans 621H]
 gi|58001815|gb|AAW60709.1| DNA repair protein RadA [Gluconobacter oxydans 621H]
          Length = 494

 Score = 36.2 bits (82), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 5/104 (4%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS--IYA 112
           LD  LG GG     +V + G    GK+TL L T     ++G    +V  E ++D   I A
Sbjct: 104 LDRVLG-GGLVPASVVLVGGDPGIGKSTLMLQTTCALARSGHRVLYVSGEESVDQIRIRA 162

Query: 113 RKLGVDLKNLLISQPDTGE--QALEITDMLVRSGAVDIIVIDSV 154
           ++LG+D    ++   D        EI   L +  A  ++VIDS+
Sbjct: 163 QRLGLDRDPKMLDSLDLAASINVGEIVGSLEQDRAHTVVVIDSI 206


>gi|154151896|ref|YP_001405514.1| putative circadian clock protein, KaiC [Candidatus Methanoregula
           boonei 6A8]
 gi|154000448|gb|ABS56871.1| putative circadian clock protein, KaiC [Methanoregula boonei 6A8]
          Length = 232

 Score = 36.2 bits (82), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 3/78 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V  G  GLD  LG GG   G I  + G   +GKTT +L+ I    K G    ++  E   
Sbjct: 6   VKMGIPGLDEMLG-GGLLAGNICAVIGTYGTGKTTFSLNFIWDGLKRGERAIYISLEERE 64

Query: 108 DSI--YARKLGVDLKNLL 123
           D +  Y ++ G D++  L
Sbjct: 65  DRLLQYMKQKGWDVEPYL 82


>gi|291524660|emb|CBK90247.1| RecA-family ATPase [Eubacterium rectale DSM 17629]
          Length = 633

 Score = 36.2 bits (82), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 99/237 (41%), Gaps = 43/237 (18%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA-----------FVDAEHAL-DSIYA 112
           P G++  + G    GKTT AL  +A +  TGGT             +  AE  L D++  
Sbjct: 330 PFGKVTIVQGNPGEGKTTFALR-LAAACTTGGTLPGMKPLPPFQVIYQTAEDGLGDTVKP 388

Query: 113 R--KLGVDLKNLLISQPDTGEQALEITD-----MLVRSGAVDIIVIDSVAALTPRAEIEG 165
           R  +   DL  +L+   D  ++ L ++D      + ++GA  +I++D + A         
Sbjct: 389 RLIEAAADLDRVLVI--DEAKRELTLSDERIEKAITQNGA-RLIILDPIQAY-------- 437

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
            MGE     +A  +    R+L     R+ C ++ I  +        G      G  ++ F
Sbjct: 438 -MGEKTDMNRANEVRPMFRRLADVAERTGCAVILIGHLNKAA----GGQSAYRGLGSIDF 492

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVV-KNKMASPFKQVEFDIMYGEGISFFGE 281
            ++ R  +  +G +K + ++     RV V  K+ +A   K V F +    G  + GE
Sbjct: 493 RAAAR-SVLLIGRVKREPNV-----RVIVHDKSSLAPEGKPVAFCLDPETGFEWIGE 543


>gi|110802836|ref|YP_699692.1| DNA repair protein RadA [Clostridium perfringens SM101]
 gi|110683337|gb|ABG86707.1| DNA repair protein RadA [Clostridium perfringens SM101]
          Length = 453

 Score = 36.2 bits (82), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 19/150 (12%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113
           L+  LG GG  KG +  I G    GK+TL L T     K  G   +V  E + + I  R 
Sbjct: 77  LNRVLG-GGLVKGSLTLISGDPGIGKSTLLLQTANNISKKYGKVLYVSGEESEEQIKIRG 135

Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            +L VD + L I      E  L++ +  +       I+IDS+        I  +   S P
Sbjct: 136 DRLKVDAEELYI----VSETNLDVIEAYIDKLEPAFIIIDSIQT------IYRETVSSAP 185

Query: 173 G--MQARLMSQALRKLTSSISRSKCILVFI 200
           G   Q +  S A+ +    I++ K I +FI
Sbjct: 186 GSVSQVKECSNAVMR----IAKGKNIPLFI 211


>gi|332188316|ref|ZP_08390042.1| kaiA binding family protein [Sphingomonas sp. S17]
 gi|332011629|gb|EGI53708.1| kaiA binding family protein [Sphingomonas sp. S17]
          Length = 483

 Score = 36.2 bits (82), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA-FV-DAEHALDSIYARKL 115
           AL  GG  +G  V I GP  +GK+ L L  +A + K G   A FV D E  L +  AR L
Sbjct: 247 ALTGGGLERGSSVLILGPAGTGKSLLVLTFVAAAVKKGEKAALFVFDEEVGLLAERARGL 306

Query: 116 GVDLKNLLISQPDTGEQALEITD 138
           G+D    +I+  D G   +E  D
Sbjct: 307 GID----IIAMMDAGALQVEQID 325


>gi|223985944|ref|ZP_03635980.1| hypothetical protein HOLDEFILI_03286 [Holdemania filiformis DSM
           12042]
 gi|223962131|gb|EEF66607.1| hypothetical protein HOLDEFILI_03286 [Holdemania filiformis DSM
           12042]
          Length = 633

 Score = 36.2 bits (82), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 101/239 (42%), Gaps = 47/239 (19%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA-----------FVDAEHAL-DSIYA 112
           P G++  + G    GKTT AL  +A +  TGGT             +  AE  L D++  
Sbjct: 330 PFGKVTIVQGNPGEGKTTFALR-LAAACTTGGTLPGMKPLPPFQVIYQTAEDGLGDTVKP 388

Query: 113 RKL--GVDLKNLLISQPDTGEQALEITD-----MLVRSGAVDIIVIDSVAALTPRAEIEG 165
           R +    DL  +L+   D  ++ L ++D      ++++GA  +I++D + A         
Sbjct: 389 RLMEAEADLDRVLVI--DEAKRELTLSDERIEKAIMQNGA-RLIILDPIQAY-------- 437

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
            MG+     +A  +    R+L     R+ C ++ I  +        G      G  ++ F
Sbjct: 438 -MGDKADMNKANEVRPIFRRLAEVAERTGCAIILIGHLNKAA----GGQSAYRGLGSIDF 492

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVV---KNKMASPFKQVEFDIMYGEGISFFGE 281
            ++ R  +  +G +K        ++ V+V+   K+ +A   K V F +    G S+ GE
Sbjct: 493 RAAAR-SVLLIGRVK-------RESNVRVIVHDKSSLAPEGKPVAFCLDPETGFSWIGE 543


>gi|47933423|gb|AAT39336.1| DNA repair protein RAD51 [Oikopleura dioica]
 gi|313216997|emb|CBY38192.1| unnamed protein product [Oikopleura dioica]
 gi|313229155|emb|CBY23740.1| unnamed protein product [Oikopleura dioica]
          Length = 340

 Score = 36.2 bits (82), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 85/206 (41%), Gaps = 23/206 (11%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           +++GS   D  L  GG   G I E++G   +GK+ L +     +Q         G   ++
Sbjct: 102 ITTGSKEFDRMLA-GGVETGSITELFGEFRTGKSQLCMTLAVTAQLPVDLGGGEGKALYI 160

Query: 102 DAEHALDS----IYARKLGVDLKNLLIS-------QPDTGEQALEITDMLVRSGAVDIIV 150
           D E           + + G+  K++L +         D     L     ++      I++
Sbjct: 161 DTEGTFRPERLLAISERYGLSGKDVLDNVAVARAFSTDHQMTMLHTCAAMMTESRYSIMI 220

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-GV 209
           +DS+ AL  R++  G  GE L   Q  L  + LR L          +V  NQ+   + G+
Sbjct: 221 VDSIMALY-RSDYSGR-GE-LAARQMHL-GKFLRGLLKLADTFGVAIVITNQVTANVDGM 276

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRR 235
           M G  +T  GGN L   S  R+ +++
Sbjct: 277 MMGDNQTPVGGNILAHASCTRIKMKK 302


>gi|154246343|ref|YP_001417301.1| DNA repair protein RadA [Xanthobacter autotrophicus Py2]
 gi|154160428|gb|ABS67644.1| DNA repair protein RadA [Xanthobacter autotrophicus Py2]
          Length = 489

 Score = 36.2 bits (82), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 13/126 (10%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YARKLGVDL 119
           GGF  G ++ I G    GK+TL +   A     G    +V  E A+D +   A++LG+D 
Sbjct: 84  GGFVPGSVLLIGGDPGIGKSTLLVQASAALAANGQRVIYVSGEEAVDQVRMRAQRLGLDQ 143

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG--MQAR 177
             + ++     E    I   L     V ++VIDS+  +        D  ES PG   Q R
Sbjct: 144 APVSLAAETNAEN---IIATLSGGPPVHMVVIDSIQTMW------SDSVESAPGTVTQVR 194

Query: 178 LMSQAL 183
             +Q L
Sbjct: 195 TSAQLL 200


>gi|121999007|ref|YP_001003794.1| putative circadian clock protein, KaiC [Halorhodospira halophila
           SL1]
 gi|121590412|gb|ABM62992.1| circadian clock protein KaiC [Halorhodospira halophila SL1]
          Length = 484

 Score = 36.2 bits (82), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 2/86 (2%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
           G++   +   E   +G  GLD  LG GG  +G  V I G   +GKT+ A      + + G
Sbjct: 247 GTRLEAYPSAERHRTGVAGLDAMLGGGGPYRGSAVMISGQSGTGKTSFAATFAGAACEAG 306

Query: 96  GTCAFVDAEHALDSIY--ARKLGVDL 119
               ++  E A D +    R +GVDL
Sbjct: 307 DRVLYLSFEEATDELLRNQRSVGVDL 332


>gi|222641426|gb|EEE69558.1| hypothetical protein OsJ_29061 [Oryza sativa Japonica Group]
          Length = 907

 Score = 36.2 bits (82), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 8/83 (9%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF--VDAEHALDSIY 111
           GL +A+     PKG+   + GP  +GKT+     I   + T GT     +D    +D IY
Sbjct: 608 GLSLAV-----PKGQCFGMLGPNGAGKTSFISMMIGLVKPTSGTSYVHGMDINMDMDHIY 662

Query: 112 ARKLGVDLKNLLISQPDTGEQAL 134
              +GV  ++ L+ +P TG++ L
Sbjct: 663 T-NMGVCPQHDLLWEPLTGKEHL 684


>gi|254417743|ref|ZP_05031467.1| DNA repair protein RadA [Brevundimonas sp. BAL3]
 gi|196183920|gb|EDX78896.1| DNA repair protein RadA [Brevundimonas sp. BAL3]
          Length = 461

 Score = 36.2 bits (82), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 13/128 (10%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +++G    D   G GG   G  + + G    GK+TL L   A++   G   A++  E A+
Sbjct: 75  ITTGVAEFDRVCG-GGVVPGSAILLSGDPGVGKSTLLLEVAAKAALRGARIAYISGEEAV 133

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDML--VRSGAVDIIVIDSVAALTPRAEIEG 165
           + I AR   + L+      P     A  + D+L  ++    DI+++DS+  L        
Sbjct: 134 EQIRARAKRMGLEQ----APVNLAAATALRDILGTLKREQFDIVIVDSIQTLW------S 183

Query: 166 DMGESLPG 173
           D+ ES PG
Sbjct: 184 DVHESGPG 191


>gi|169344135|ref|ZP_02865118.1| DNA repair protein RadA [Clostridium perfringens C str. JGS1495]
 gi|169297746|gb|EDS79845.1| DNA repair protein RadA [Clostridium perfringens C str. JGS1495]
          Length = 461

 Score = 36.2 bits (82), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 19/150 (12%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113
           L+  LG GG  KG +  I G    GK+TL L T     K  G   +V  E + + I  R 
Sbjct: 85  LNRVLG-GGLVKGSLTLISGDPGIGKSTLLLQTANNISKKYGKVLYVSGEESEEQIKIRG 143

Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            +L VD + L I      E  L++ +  +       I+IDS+        I  +   S P
Sbjct: 144 DRLKVDAEELYI----VSETNLDVIEAYIDKLEPAFIIIDSIQT------IYRETVSSAP 193

Query: 173 G--MQARLMSQALRKLTSSISRSKCILVFI 200
           G   Q +  S A+ +    I++ K I +FI
Sbjct: 194 GSVSQVKECSNAVMR----IAKGKNIPLFI 219


>gi|77458878|ref|YP_348384.1| circadian clock protein KaiC [Pseudomonas fluorescens Pf0-1]
 gi|77382881|gb|ABA74394.1| putative protein kinase [Pseudomonas fluorescens Pf0-1]
          Length = 505

 Score = 36.2 bits (82), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 13/119 (10%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +SSG   +D  LG GG   G    I GP  +GK+ + +   A +   G   A    +  L
Sbjct: 259 LSSGIKEMDALLG-GGIETGSSTLILGPAGTGKSLITMIFAAAAVARGEKAALFIFDEEL 317

Query: 108 DSIYAR--KLGVDLK------NLLISQPDTGEQAL-EITDMLVRS---GAVDIIVIDSV 154
             ++ R   +G+DLK      NLLI Q D  E +  E +  + R    G +  +VIDS+
Sbjct: 318 GLLFERMNNIGIDLKALQATGNLLIEQVDAAELSPGEFSHRVRRCVDEGDIKTVVIDSI 376


>gi|126458638|ref|YP_001054916.1| putative circadian clock protein, KaiC [Pyrobaculum calidifontis
           JCM 11548]
 gi|126248359|gb|ABO07450.1| putative circadian clock protein, KaiC [Pyrobaculum calidifontis
           JCM 11548]
          Length = 257

 Score = 36.2 bits (82), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQKTGGTCAFVDAE 104
           E V +G  GLD  LG GGF +GR   I G   + KT  AL  + Q + K G    ++  +
Sbjct: 8   ETVPTGIEGLDTVLG-GGFIRGRTYLISGETGTAKTLTALTFLIQGALKYGEPGIYISVD 66

Query: 105 HALDSIY--ARKLGVDLKNL 122
              +     AR+ G D++ L
Sbjct: 67  ETYEQFVEGARRFGWDIEEL 86


>gi|154249060|ref|YP_001409885.1| DNA repair protein RadA [Fervidobacterium nodosum Rt17-B1]
 gi|154152996|gb|ABS60228.1| DNA repair protein RadA [Fervidobacterium nodosum Rt17-B1]
          Length = 465

 Score = 36.2 bits (82), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 9/102 (8%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALH---TIAQSQKTGGTCAFVDAEHALDSI--YARKLG 116
           GG  KG+++ + G    GK+T+AL    +IA++        ++  E ++  +   A++LG
Sbjct: 89  GGLIKGQVILLGGEPGVGKSTIALQICDSIARNSNNDKRIYYISGEESVGQVGLRAKRLG 148

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           ++ + LLIS     E  L   D         +IV+DS+  L 
Sbjct: 149 INNEKLLISSETQIEDILNEID----PNKAQLIVVDSIQTLC 186


>gi|222480120|ref|YP_002566357.1| putative circadian clock protein, KaiC [Halorubrum lacusprofundi
           ATCC 49239]
 gi|222453022|gb|ACM57287.1| putative circadian clock protein, KaiC [Halorubrum lacusprofundi
           ATCC 49239]
          Length = 499

 Score = 36.2 bits (82), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 49/118 (41%), Gaps = 18/118 (15%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G  GLD  L  GG    R   + G   SGKT L+ H + Q    G T  F++ E  L 
Sbjct: 10  STGIRGLDEVLS-GGLVPERSYMVRGQAGSGKTILSFHFLQQGVDEGETVLFINLEEDLR 68

Query: 109 SIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
            + A    LG D              A+E  D+   S + D+ V D    +   AE+E
Sbjct: 69  DLKANAAALGFDT------------DAIEFLDL---SPSADVFVEDDSYEVFAPAEVE 111


>gi|170764133|ref|ZP_02632832.2| DNA repair protein RadA [Clostridium perfringens E str. JGS1987]
 gi|170764282|ref|ZP_02640347.2| DNA repair protein RadA [Clostridium perfringens CPE str. F4969]
 gi|182626984|ref|ZP_02954714.1| DNA repair protein RadA [Clostridium perfringens D str. JGS1721]
 gi|170661740|gb|EDT14423.1| DNA repair protein RadA [Clostridium perfringens E str. JGS1987]
 gi|170713809|gb|EDT25991.1| DNA repair protein RadA [Clostridium perfringens CPE str. F4969]
 gi|177907654|gb|EDT70278.1| DNA repair protein RadA [Clostridium perfringens D str. JGS1721]
          Length = 461

 Score = 36.2 bits (82), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 19/150 (12%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113
           L+  LG GG  KG +  I G    GK+TL L T     K  G   +V  E + + I  R 
Sbjct: 85  LNRVLG-GGLVKGSLTLISGDPGIGKSTLLLQTANNISKKYGKVLYVSGEESEEQIKIRG 143

Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            +L VD + L I      E  L++ +  +       I+IDS+        I  +   S P
Sbjct: 144 DRLKVDAEELYI----VSETNLDVIEAYIDKLEPAFIIIDSIQT------IYRETVSSAP 193

Query: 173 G--MQARLMSQALRKLTSSISRSKCILVFI 200
           G   Q +  S A+ +    I++ K I +FI
Sbjct: 194 GSVSQVKECSNAVMR----IAKGKNIPLFI 219


>gi|118151310|ref|NP_001071585.1| DNA repair protein XRCC3 [Bos taurus]
 gi|122132264|sp|Q08DH8|XRCC3_BOVIN RecName: Full=DNA repair protein XRCC3; AltName: Full=X-ray repair
           cross-complementing protein 3
 gi|115304929|gb|AAI23743.1| X-ray repair complementing defective repair in Chinese hamster
           cells 3 [Bos taurus]
 gi|296475234|gb|DAA17349.1| DNA repair protein XRCC3 [Bos taurus]
          Length = 341

 Score = 36.2 bits (82), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 68/163 (41%), Gaps = 30/163 (18%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           A+  L  +G   E  + +S G   LD AL  GG P   I E+ G  S+GKT LAL     
Sbjct: 65  ALHLLRQEGPFPEQHQRLSLGCPVLD-ALLRGGLPLDGITELAGRSSAGKTQLALQLCLA 123

Query: 91  SQ---KTGGTCA---FVDAEHALDS-------IYARKLGVDLKNLLISQPDTGEQAL--- 134
            Q   + GG  A   +V  E A  S          ++L  D+   +IS+   G Q     
Sbjct: 124 VQLPPRHGGLGAGAVYVCTEDAFPSRRLQQLIAQQQRLRADVPGHVISKIRFGHQIFIEH 183

Query: 135 ------------EITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
                       E   +L+  G   ++VIDSVAA   R E +G
Sbjct: 184 AADVDTLLQCVREKVPVLLARGMARLVVIDSVAAPF-RCEFDG 225


>gi|251780429|ref|ZP_04823349.1| DNA repair protein RadA [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243084744|gb|EES50634.1| DNA repair protein RadA [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 455

 Score = 36.2 bits (82), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 7/114 (6%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E   +G   L+  LG GG  KG +  I G    GK+TL L T        G   +V  E 
Sbjct: 70  ERYDTGIRELNRVLG-GGLVKGSLTLISGDPGIGKSTLLLQTANNIALKYGKVLYVSGEE 128

Query: 106 ALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           + + I  R  +LGV+ +NL I      E  L+   + +     + ++IDS+  +
Sbjct: 129 SEEQIKIRGDRLGVNSENLFI----ISETNLDAISIYIEQINPNFVIIDSIQTV 178


>gi|308806876|ref|XP_003080749.1| DNA repair protein RAD51/RHP55 (ISS) [Ostreococcus tauri]
 gi|116059210|emb|CAL54917.1| DNA repair protein RAD51/RHP55 (ISS) [Ostreococcus tauri]
          Length = 420

 Score = 36.2 bits (82), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 94/222 (42%), Gaps = 51/222 (22%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS------QKTG-GTCA 99
           ++++G   +D  L  GG   G + EIYG   +GKT L +HT+A +      Q  G G C 
Sbjct: 182 MITTGCAKVDEMLQ-GGIESGSVTEIYGEFRTGKTQL-MHTLAVTCQLPIEQGGGEGKCL 239

Query: 100 FVDAE-----HALDSIYAR---KLGVDLKNLLISQPDTGEQALEITDMLVRSGAV----- 146
           ++D E       L  I  R     G  L N+  ++    E     T++LV +  +     
Sbjct: 240 YIDTEGTFRPQRLIQIAERFQMDPGPVLDNVAYAKAHNTEHQ---TELLVAAAGMMAETR 296

Query: 147 -DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS--QALRKLTSSISRSKCILVFINQM 203
             +++IDSV  L  R E EG  GE    + AR M   + LR+L          ++  NQ 
Sbjct: 297 FALMIIDSVTNLY-RTEYEG-RGE----LSARQMHLGKFLRQLARLADEFGVAVIVSNQ- 349

Query: 204 RMKIGVMFGSPE----------TTTGGNALKFYSSVRLDIRR 235
                 +  +PE             GGN +   S+ RL +R+
Sbjct: 350 ------VVANPEGGPFAGANALKPIGGNIMAHASTTRLALRK 385


>gi|182420533|ref|ZP_02643551.2| DNA repair protein RadA [Clostridium perfringens NCTC 8239]
 gi|182380032|gb|EDT77511.1| DNA repair protein RadA [Clostridium perfringens NCTC 8239]
          Length = 461

 Score = 36.2 bits (82), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 19/150 (12%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113
           L+  LG GG  KG +  I G    GK+TL L T     K  G   +V  E + + I  R 
Sbjct: 85  LNRVLG-GGLVKGSLTLISGDPGIGKSTLLLQTANNISKKYGKVLYVSGEESEEQIKIRG 143

Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            +L VD + L I      E  L++ +  +       I+IDS+        I  +   S P
Sbjct: 144 DRLKVDAEELYI----VSETNLDVIEAYIDKLEPAFIIIDSIQT------IYRETVSSAP 193

Query: 173 G--MQARLMSQALRKLTSSISRSKCILVFI 200
           G   Q +  S A+ +    I++ K I +FI
Sbjct: 194 GSVSQVKECSNAVMR----IAKGKNIPLFI 219


>gi|167757458|ref|ZP_02429585.1| hypothetical protein CLORAM_03008 [Clostridium ramosum DSM 1402]
 gi|237735474|ref|ZP_04565955.1| ABC spermidine/putrescine transporter [Mollicutes bacterium D7]
 gi|167703633|gb|EDS18212.1| hypothetical protein CLORAM_03008 [Clostridium ramosum DSM 1402]
 gi|229381219|gb|EEO31310.1| ABC spermidine/putrescine transporter [Coprobacillus sp. D7]
          Length = 249

 Score = 36.2 bits (82), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 9/59 (15%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           F+GI ++++ SL +         PKG+IV I GP  SGKTTL    +  S+   G   F
Sbjct: 11  FDGINILNNLSLEI---------PKGQIVSILGPSGSGKTTLLNLILGISEVDSGRIIF 60


>gi|21226559|ref|NP_632481.1| DNA repair and recombination protein RadA [Methanosarcina mazei
           Go1]
 gi|20904832|gb|AAM30153.1| recombination/repair protein RadA [Methanosarcina mazei Go1]
          Length = 367

 Score = 36.2 bits (82), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 93/217 (42%), Gaps = 35/217 (16%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100
           +++G    D  +G GG     I E+YG   SGKT +A H +A + +        GG+   
Sbjct: 124 LTTGCTEFDEMMG-GGIETQAITELYGEFGSGKTQVA-HQLAVNVQMDREHGGLGGSVII 181

Query: 101 VDAEHA------------LDSIYARKLGVD--LKNLLISQPDTGEQ-------ALEITDM 139
           +D E+             L   Y  +L  +  L+N+ +++             A+++ + 
Sbjct: 182 IDTENTFRPERITQMVNGLSEKYGMELNPEEFLQNIHVARAYNSNHQILLVDSAVDLANE 241

Query: 140 LVRSG-AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           L   G  V ++++DS+ A   RAE  G    +L   Q +L       L      + C++V
Sbjct: 242 LKEMGKPVRLLIVDSLMAHF-RAEYVGR--GTLADRQQKLNKHMHGLLRFGDLFNACVVV 298

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
             NQ+  K    FG P    GG+ +   ++ RL +R+
Sbjct: 299 -TNQVMAKPDAFFGDPTRPIGGHIVGHTATFRLYLRK 334


>gi|18311415|ref|NP_563349.1| DNA repair protein RadA [Clostridium perfringens str. 13]
 gi|110799987|ref|YP_697121.1| DNA repair protein RadA [Clostridium perfringens ATCC 13124]
 gi|18146099|dbj|BAB82139.1| DNA repair protein [Clostridium perfringens str. 13]
 gi|110674634|gb|ABG83621.1| DNA repair protein RadA [Clostridium perfringens ATCC 13124]
          Length = 453

 Score = 36.2 bits (82), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 19/150 (12%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113
           L+  LG GG  KG +  I G    GK+TL L T     K  G   +V  E + + I  R 
Sbjct: 77  LNRVLG-GGLVKGSLTLISGDPGIGKSTLLLQTANNISKKYGKVLYVSGEESEEQIKIRG 135

Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            +L VD + L I      E  L++ +  +       I+IDS+        I  +   S P
Sbjct: 136 DRLKVDAEELYI----VSETNLDVIEAYIDKLEPAFIIIDSIQT------IYRETVSSAP 185

Query: 173 G--MQARLMSQALRKLTSSISRSKCILVFI 200
           G   Q +  S A+ +    I++ K I +FI
Sbjct: 186 GSVSQVKECSNAVMR----IAKGKNIPLFI 211


>gi|182412924|ref|YP_001817990.1| non-specific serine/threonine protein kinase [Opitutus terrae
           PB90-1]
 gi|177840138|gb|ACB74390.1| Non-specific serine/threonine protein kinase [Opitutus terrae
           PB90-1]
          Length = 489

 Score = 36.2 bits (82), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 10/121 (8%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           ++G +GLD  L  GGF + R+  + G   SGKTTLAL  + + +K G    ++    + +
Sbjct: 9   TTGIVGLDDILN-GGFTENRMYLVEGDPGSGKTTLALQYLLEGRKLGEHGLYLTLSESKE 67

Query: 109 SIY--ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI-------IVIDSVAALTP 159
            +   A   G  L+ + I + + GE+ L   + L      ++        V++SV    P
Sbjct: 68  ELLAGAASHGWSLEGIEIVELNAGEKGLSADENLTMYNPSEVELSETTRAVLESVERTQP 127

Query: 160 R 160
           R
Sbjct: 128 R 128


>gi|219847559|ref|YP_002461992.1| circadian clock protein KaiC [Chloroflexus aggregans DSM 9485]
 gi|219541818|gb|ACL23556.1| putative circadian clock protein, KaiC [Chloroflexus aggregans DSM
           9485]
          Length = 514

 Score = 36.2 bits (82), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE + +G  G D  +  GG PKGR   + G   S KT  A   +A   K G    FV  E
Sbjct: 6   IERLPTGITGFD-HIANGGLPKGRTTLVSGTAGSAKTVFAAQFLAAGIKRGEPGVFVTFE 64

Query: 105 HALDSIYARKLG 116
              +++    LG
Sbjct: 65  ETPEALRRNMLG 76


>gi|221215346|ref|ZP_03588311.1| conserved hypothetical protein [Burkholderia multivorans CGD1]
 gi|221164778|gb|EED97259.1| conserved hypothetical protein [Burkholderia multivorans CGD1]
          Length = 238

 Score = 36.2 bits (82), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 5/106 (4%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESS-GKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           V +G   L   L  GG+P G +VE+  P++  G+  L    +A+S  +G     +   H 
Sbjct: 29  VDTGHAELTAELPGGGWPAGALVELLTPQAGIGELRLLAPVLARS--SGRPIMLIQPPHG 86

Query: 107 LDSIYARKLGVDLKN-LLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           L  +     GVD  + +L+  P T + AL   + ++R+G    +++
Sbjct: 87  LQPLALSYWGVDPSSFVLLPAPRTAD-ALWAAEQVLRAGTCAAVLL 131


>gi|212543955|ref|XP_002152132.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224]
 gi|210067039|gb|EEA21132.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224]
          Length = 442

 Score = 36.2 bits (82), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 6/49 (12%)

Query: 48 VSSGSLGLDIALGI------GGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
          + +G  GLD AL +       G P+G I EIYGP   GKT  +L+  A+
Sbjct: 45 LPTGLDGLDDALCVTTGLLSSGIPRGSITEIYGPPGVGKTAFSLNIAAK 93


>gi|315231057|ref|YP_004071493.1| circadian clock KaiC-like protein [Thermococcus barophilus MP]
 gi|315184085|gb|ADT84270.1| circadian clock KaiC-like protein [Thermococcus barophilus MP]
          Length = 452

 Score = 36.2 bits (82), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 14/110 (12%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQS-QKTGGTCAFVDAEHALDSIY--ARKLGVDL 119
           GFP+G ++ + G   +GKT      I    +K G    ++      +  Y   ++LG+D 
Sbjct: 16  GFPEGSLIIVAGEPGTGKTIFTSTIIHNGLEKFGEKGMYISLSETKEDFYDEMKRLGMDF 75

Query: 120 K-----------NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           +           +L+   PD  E+ +E+    + S     IVIDS+ ALT
Sbjct: 76  EKYEKSGLFRFMDLVTVTPDVIEKEIELIMKEILSFRPKRIVIDSITALT 125


>gi|193213796|ref|YP_001994995.1| circadian clock protein KaiC [Chloroherpeton thalassium ATCC 35110]
 gi|193087273|gb|ACF12548.1| putative circadian clock protein, KaiC [Chloroherpeton thalassium
           ATCC 35110]
          Length = 574

 Score = 36.2 bits (82), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + V SG   LD  LG  GF +G  V + G   +GK++LA      +   G  C +++ E 
Sbjct: 259 DFVPSGLSSLDELLGGRGFYRGSSVLLTGAAGTGKSSLASQFAQAACGRGEKCLYLNMEE 318

Query: 106 ALDSIY--ARKLGVDL-----KNLLISQP 127
           ++  I    R +GV+L     K LL+ +P
Sbjct: 319 SVWQIVRNMRSIGVELEPFIEKGLLLFEP 347


>gi|160331524|ref|XP_001712469.1| rad51 [Hemiselmis andersenii]
 gi|159765917|gb|ABW98144.1| rad51 [Hemiselmis andersenii]
          Length = 328

 Score = 36.2 bits (82), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 95/210 (45%), Gaps = 29/210 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G I E+ G   +GKT L  H IA S +         G   F
Sbjct: 91  LTTGSQELDKILR-GGIETGSITELIGEYRTGKTQLC-HNIAVSAQLSYDQGGGEGRAIF 148

Query: 101 VDAEHALDS-----IYAR-KLG-VD-LKNLLISQPDTGEQALEITD----MLVRSGAVDI 148
           +D E          I  R KL  +D L+N+ +++    +Q LEI +    M+V+     +
Sbjct: 149 LDTEGTFRPERIVDIAGRFKLNSLDVLENIALTRAYNVDQQLEILNSVGSMMVKY-KFAV 207

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI- 207
           +++DS+ AL  RAE  G  GE L   Q  L  + +++L          ++  NQ+  ++ 
Sbjct: 208 LIVDSIIALY-RAEFIG-RGE-LSARQQHL-GRFIKQLQRLCDEFNIAVLITNQVVAQVD 263

Query: 208 --GVMFGSPETTTGGNALKFYSSVRLDIRR 235
                   P+   GGN +   S  RL +++
Sbjct: 264 GCNSFVQDPKKACGGNIIAHASQTRLFLKK 293


>gi|312898315|ref|ZP_07757705.1| DNA repair protein RadA [Megasphaera micronuciformis F0359]
 gi|310620234|gb|EFQ03804.1| DNA repair protein RadA [Megasphaera micronuciformis F0359]
          Length = 455

 Score = 36.2 bits (82), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 7/105 (6%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113
           LD  LG GG   G ++ + G    GK+TL L T A   +  GT  +   E +   I  R 
Sbjct: 78  LDTVLG-GGIVPGALILLSGDPGIGKSTLVLQTAAAVSREAGTVLYASGEESAGQIKMRA 136

Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            +L + + +L + Q DT    L+      +S  V +++IDS+  +
Sbjct: 137 DRLNIKVDDLFV-QADT---YLDSVLKEAKSRNVGLLIIDSIQTM 177


>gi|298250875|ref|ZP_06974679.1| KaiA binding protein [Ktedonobacter racemifer DSM 44963]
 gi|297548879|gb|EFH82746.1| KaiA binding protein [Ktedonobacter racemifer DSM 44963]
          Length = 529

 Score = 36.2 bits (82), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +G   LD+ L  GG PKG +  I GP  SGKTTLA      + + G    F+ A
Sbjct: 23  PTGIPHLDLVLD-GGLPKGALTVILGPPGSGKTTLASQIAFAAAQRGEKVLFLTA 76


>gi|331027960|ref|YP_004421510.1| DNA helicase [Synechococcus phage S-CBS2]
 gi|294805573|gb|ADF42412.1| DNA helicase [Synechococcus phage S-CBS2]
          Length = 573

 Score = 36.2 bits (82), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 45  IEVVSSGSLGLDIALGIGGFPK----GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           ++ VS+G L LDI +  G  P     GR+  + G    GKT + +   A +   G T  F
Sbjct: 260 VKPVSTGILALDIDMEGGLRPDDLGGGRVFTLCGRTGDGKTQVGVQIAAAAALGGVTVGF 319

Query: 101 VDAEHALDSIYAR 113
           + AE    SIYAR
Sbjct: 320 ISAELDEGSIYAR 332


>gi|322433252|ref|YP_004210473.1| RecA domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321165644|gb|ADW71346.1| RecA domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 375

 Score = 36.2 bits (82), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 29/123 (23%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +   ++SSG L +D  LG G    G + E  G  SSG+T+LA  ++ +       CA++
Sbjct: 31  LQAPRLMSSGVLAIDGLLGGGLP-IGGVTEFTGLASSGRTSLAF-SLLRGATADSACAYI 88

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           D +   D   A   GV+ +NLL                 VR           VA+L PRA
Sbjct: 89  DVDDTFDPKCAAASGVNHQNLL----------------WVR-----------VASLRPRA 121

Query: 162 EIE 164
           E+E
Sbjct: 122 EVE 124


>gi|296284105|ref|ZP_06862103.1| DNA repair protein RadA [Citromicrobium bathyomarinum JL354]
          Length = 454

 Score = 36.2 bits (82), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 13/141 (9%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
            SQ   + G G  ++  S     +  E  ++G    D ALG GG   G  + I G    G
Sbjct: 42  FSQKHDLSGGGRRLEFVSLSDAVKPPERATTGLKEFDRALG-GGLVPGAAILIGGDPGIG 100

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEIT 137
           K+TL L T     + GG   +V  E A   +  R  +LG      L   P     +  + 
Sbjct: 101 KSTLLLQTAGAIARKGGDVVYVSGEEASAQVRLRAERLG------LADAPVRLASSTNVR 154

Query: 138 DMLVRSG----AVDIIVIDSV 154
           D+L   G    A D++V+DS+
Sbjct: 155 DILTTLGAQDEAPDLLVVDSI 175


>gi|223937898|ref|ZP_03629798.1| putative circadian clock protein, KaiC [bacterium Ellin514]
 gi|223893504|gb|EEF59965.1| putative circadian clock protein, KaiC [bacterium Ellin514]
          Length = 497

 Score = 36.2 bits (82), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 27/178 (15%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E   SG   LD  LG GG  +G      GP  +GK+TLA+   + +   G    F   + 
Sbjct: 251 EAFPSGIAELDALLG-GGIDRGTSNMFMGPPGTGKSTLAMRYASAAVAKGEKVRFFSFDE 309

Query: 106 ALDSIYARK--LGVDLKN------LLISQPD-----TGEQALEITDMLVRSGAVDIIVID 152
              ++  R   LG+D++       L I Q D      GE A  I   + + G   +++ID
Sbjct: 310 TAGTLVGRSIALGMDIRPHLKSGLLCIEQIDPAEISPGELAHSIQKAVEKDGT-RMVIID 368

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           S+               ++PG   R +S  L +L S +++   I + +   +  +G M
Sbjct: 369 SINGYL----------NAMPG--ERFLSLQLHELLSYLNQQGVITIMVLAQQGMLGNM 414


>gi|147858028|emb|CAN80345.1| hypothetical protein VITISV_003133 [Vitis vinifera]
          Length = 1051

 Score = 36.2 bits (82), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-QSQKTGGTCAFVDAE 104
           +V+S+G  G+D+ L  GG   G + E+ GP SSGKT + L   +  + +  G   F+D  
Sbjct: 87  QVLSTGCEGIDMLLQ-GGLCVGHLTELVGPSSSGKTQICLKVASGVATRYMGGVVFIDTG 145

Query: 105 HALDSI 110
           ++   +
Sbjct: 146 NSFSPL 151


>gi|146282703|ref|YP_001172856.1| signal transduction ATPase [Pseudomonas stutzeri A1501]
 gi|145570908|gb|ABP80014.1| RecA-superfamily ATPase implicated in signal transduction
           [Pseudomonas stutzeri A1501]
 gi|327480962|gb|AEA84272.1| signal transduction ATPase [Pseudomonas stutzeri DSM 4166]
          Length = 470

 Score = 36.2 bits (82), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 61/129 (47%), Gaps = 18/129 (13%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI--AQSQKTGGTCAFV 101
           G  ++ +G  GLD ALG GGF +     + GP  +GKTT AL+ +  A   + G    FV
Sbjct: 238 GERMLPTGIGGLDEALG-GGFIERSATLVIGPSGAGKTTFALNFLAGAAPDEHGAFFGFV 296

Query: 102 DA-EHALDSIYARKLG---------VDLKNLLISQPDTGEQALEITDML--VRSGAVDII 149
           ++ E  L      +LG         +D      +Q      AL   DML  +R   +  I
Sbjct: 297 ESPEQLLRKSGQLELGLEKPVEQGRLDFHWQPTTQFIPDRMAL---DMLARIRHKQLSRI 353

Query: 150 VIDSVAALT 158
           VID++AALT
Sbjct: 354 VIDTLAALT 362


>gi|29899134|gb|AAP03101.1| putative ATP-binding protein [Streptomyces griseochromogenes]
          Length = 274

 Score = 35.8 bits (81), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 28/53 (52%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
            P+GR++ + GP  +GK+TL   +    Q T GT   + AE A    +  K+G
Sbjct: 27  IPQGRVIGLVGPNGAGKSTLLNMSCGLIQPTSGTIRVLGAEPAASPAHLAKVG 79


>gi|212224038|ref|YP_002307274.1| ATPase [Thermococcus onnurineus NA1]
 gi|212008995|gb|ACJ16377.1| ATPase [Thermococcus onnurineus NA1]
          Length = 234

 Score = 35.8 bits (81), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 3/77 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+G  GLD  L  GG   GR   + G   +GKTTL +  + +  K G    +V  E
Sbjct: 1   MERISTGIKGLDKMLE-GGLIPGRTYLVKGGPGTGKTTLTIQFLTEGVKNGEDVLYVTLE 59

Query: 105 HALDSIY--ARKLGVDL 119
            +L ++     KLG +L
Sbjct: 60  ESLKTLKEDMSKLGFNL 76


>gi|327274388|ref|XP_003221959.1| PREDICTED: DNA repair protein XRCC2-like [Anolis carolinensis]
          Length = 276

 Score = 35.8 bits (81), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 28/150 (18%)

Query: 63  GFP-KGRIVEIYGPESSGKTTLALHTIAQS---QKTGGT---CAFVDAEHALDSIYARKL 115
           G+P  G I+E YGPE +GKT +  H IA+    +  GG      F+D +   D +  R +
Sbjct: 36  GYPIPGDIIECYGPEGTGKTEMFYHLIARCILPKSRGGLEVGLLFIDTDFHFDML--RLV 93

Query: 116 GVDLKNLLISQPDTGEQAL-------------------EITDMLVRSGAVDIIVIDSVAA 156
            +          D  +Q L                    + +M     ++ +++IDS++A
Sbjct: 94  TILEHRSSQGTEDMIKQCLGRFFLVNCSSSSQLLLTLYSLENMFCSHPSLCLLIIDSISA 153

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKL 186
                 + G    SL     R  +Q L KL
Sbjct: 154 FYWIDRVNGGESISLQEANLRRCAQFLEKL 183


>gi|116206996|ref|XP_001229307.1| hypothetical protein CHGG_02791 [Chaetomium globosum CBS 148.51]
 gi|88183388|gb|EAQ90856.1| hypothetical protein CHGG_02791 [Chaetomium globosum CBS 148.51]
          Length = 350

 Score = 35.8 bits (81), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 93/211 (44%), Gaps = 29/211 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100
           +++GS  LD  L  GG   G + E++G   +GK+ +  HT+A + +         G C +
Sbjct: 105 ITTGSKQLDTLLA-GGIETGSVTELFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 162

Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDII 149
           +D E     +     A + G+     L N+  ++    +  L++ +    ++      ++
Sbjct: 163 IDTEGTFRPVRLLAVANRYGLSGEEVLDNVAYARAYNSDHQLQLLNQAAAMMCETRFSLL 222

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207
           V+DS  +L  R +  G  GE L   Q  L ++ LR L          +V  NQ+  ++  
Sbjct: 223 VVDSATSLY-RTDFLG-RGE-LNSRQTHL-AKFLRTLQRLADEFGIAVVITNQVVAQVDG 278

Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIRR 235
               MF   P+   GGN +   S+ R+ +++
Sbjct: 279 GPSAMFNPDPKKPIGGNIMAHSSTTRISLKK 309


>gi|315640334|ref|ZP_07895451.1| DNA repair protein RadA [Enterococcus italicus DSM 15952]
 gi|315483996|gb|EFU74475.1| DNA repair protein RadA [Enterococcus italicus DSM 15952]
          Length = 456

 Score = 35.8 bits (81), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 9/107 (8%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YA 112
           L+  LG GG   G ++ + G    GK+TL L    Q   TGGT  +V  E + + I   A
Sbjct: 79  LNRVLG-GGVVPGSLILLGGDPGIGKSTLLLQVSQQLAATGGTVLYVSGEESAEQIKLRA 137

Query: 113 RKLGV-DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           ++LGV + +  L ++ D  +    I D+     A   ++IDS+  +T
Sbjct: 138 QRLGVINDEFYLYAETDMSDIRKAIEDL-----APQYVIIDSIQTMT 179


>gi|325118121|emb|CBZ53672.1| putative DNA repair protein [Neospora caninum Liverpool]
          Length = 353

 Score = 35.8 bits (81), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 102/226 (45%), Gaps = 35/226 (15%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-----QKTG--GTCAFV 101
           ++GS+ LD +L  GG   G + E++G   +GKT L  HT+A +     ++ G  G C ++
Sbjct: 114 TTGSVQLD-SLLKGGIETGNLTELFGEFRTGKTQLC-HTLAVTCQLPIEQAGGEGKCLWI 171

Query: 102 DAEHALD-----SIYARKLGVD----LKNLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           D E         SI A++ G++    L N+  ++    +  +E+      ++      ++
Sbjct: 172 DTEGTFRPERIVSI-AKRFGLNANDCLDNVAYARAYNCDHQMELLMEASAMMAESRFALL 230

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMS--QALRKLTSSISRSKCILVFINQM--RM 205
           ++DS  AL  R+E  G  GE L   Q  L    + L+++  +   +  +   +      M
Sbjct: 231 IVDSATALY-RSEYTG-RGE-LASRQTHLCRFLRCLQRIADTYGVAVVVSNQVVAKVDNM 287

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
             G+  G+ +   GGN +   S  RL +R      R+  I D  S+
Sbjct: 288 GGGMFAGNEKLPIGGNIMAHASQTRLYLRKGRGESRICKIYDSPSL 333


>gi|303238349|ref|ZP_07324884.1| DNA repair protein RadA [Acetivibrio cellulolyticus CD2]
 gi|302594053|gb|EFL63766.1| DNA repair protein RadA [Acetivibrio cellulolyticus CD2]
          Length = 454

 Score = 35.8 bits (81), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 20/162 (12%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113
           +D  LG GG  KG +V + G    GK+TL L  I  + K      +V  E ++  I  R 
Sbjct: 76  MDRVLG-GGIVKGSLVLVGGDPGIGKSTLILQ-ICDTVKIDSKIIYVSGEESIKQIKIRA 133

Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            +LGV   NLL+   +T  +A+E    L  +    +I++DS+  +        D   S P
Sbjct: 134 DRLGVRNSNLLMVS-ETNFKAIE---ALSENENPALIIVDSIQTMFK------DELSSAP 183

Query: 173 G--MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           G   Q R ++  L +    I+++K I +FI     K G + G
Sbjct: 184 GSVSQVREITSGLMR----IAKTKNIAIFIVGHVTKEGALAG 221


>gi|255281156|ref|ZP_05345711.1| toprim domain protein [Bryantella formatexigens DSM 14469]
 gi|255268113|gb|EET61318.1| toprim domain protein [Bryantella formatexigens DSM 14469]
          Length = 625

 Score = 35.8 bits (81), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 99/239 (41%), Gaps = 47/239 (19%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA-----------FVDAEHAL-DSIYA 112
           P G++  + G    GKTT AL  +A +  TGGT             +  AE  L D++  
Sbjct: 330 PFGKVTIVQGNPGEGKTTFALR-LAAACTTGGTLPGMKPMQPFQVIYQTAEDGLGDTVKP 388

Query: 113 R--KLGVDLKNLLISQPDTGEQALEITD-----MLVRSGAVDIIVIDSVAALTPRAEIEG 165
           R  +   DL  +L+   D  ++ L ++D      ++++GA  +I++D + A         
Sbjct: 389 RLIEAAADLDRVLVI--DEAKRELTLSDERIEKAIIQNGA-RLIILDPIQAY-------- 437

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
            MG+     +A  +    R+L     R+ C ++ I  +        G      G  ++ F
Sbjct: 438 -MGDKADMNKANEVRPIFRRLAEVAERTGCAVILIGHLNKAA----GGQSAYRGLGSIDF 492

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVV---KNKMASPFKQVEFDIMYGEGISFFGE 281
            ++ R  +  +G +K        +  V+V+   K+ +A   K V F +    G  + GE
Sbjct: 493 RAAAR-SVLLIGRVK-------REPNVRVIIHDKSSLAPEGKPVAFCLDPETGFEWIGE 543


>gi|292656359|ref|YP_003536256.1| KaiC-type circadian regulator Circ4 [Haloferax volcanii DS2]
 gi|291371723|gb|ADE03950.1| KaiC-type circadian regulator Circ4 [Haloferax volcanii DS2]
          Length = 234

 Score = 35.8 bits (81), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + SG  G D  L  GGF   R+  + GP  SGKTT     +A+  + G  C ++      
Sbjct: 3   IPSGVSGFD-ELIQGGFLPRRLYALSGPPGSGKTTFTAQFMAEGLRNGEKCMYITMHETE 61

Query: 108 DSI 110
           D +
Sbjct: 62  DEL 64


>gi|269468598|gb|EEZ80242.1| ATP-dependent serine protease [uncultured SUP05 cluster bacterium]
          Length = 453

 Score = 35.8 bits (81), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 70/158 (44%), Gaps = 16/158 (10%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G   LD  LG GG   G +V I G    GK+TL L  +A   K   T  ++  E + 
Sbjct: 71  LSTGLTELDRTLG-GGLVDGSVVLIGGDPGIGKSTLILQAMAAINKD-NTTLYISGEESA 128

Query: 108 DSIYARKLGVDLKN--LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           + I  R + +++    LL+S     E  LE    L +     +IVIDS+  +        
Sbjct: 129 EQISDRAIRLNIHEDILLLS-----ETHLEKIIKLAKEVQPKVIVIDSIQTMVT------ 177

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           D   S PG   ++   A  +LT    ++  IL+ I  +
Sbjct: 178 DGSTSAPGSVTQVRDCA-AQLTQFAKQTNTILLMIGHV 214


>gi|317130512|ref|YP_004096794.1| circadian clock protein, KaiC [Bacillus cellulosilyticus DSM 2522]
 gi|315475460|gb|ADU32063.1| putative circadian clock protein, KaiC [Bacillus cellulosilyticus
           DSM 2522]
          Length = 469

 Score = 35.8 bits (81), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           ++V++G  GLD  L  GG PKG  + + G   +GKTT+ +  +      G    ++  + 
Sbjct: 3   QLVTTGINGLDSLLN-GGIPKGNGIIVEGAPGTGKTTMGIQFLYHGALNGENGLYLSFQE 61

Query: 106 ALDSIYA--RKLGVDLKNL 122
             D IY+     G ++K L
Sbjct: 62  FPDQIYSDMSNFGFNIKEL 80


>gi|268608960|ref|ZP_06142687.1| DNA repair protein RadA [Ruminococcus flavefaciens FD-1]
          Length = 457

 Score = 35.8 bits (81), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 7/99 (7%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR--KLGVDL 119
           GG  KG +V + G    GK+T+ L  I Q      +  +V  E +   I  R  +LGVD 
Sbjct: 87  GGLVKGSLVLLGGEPGIGKSTILLQ-ICQYLGEDHSILYVSGEESARQIKLRAARLGVDT 145

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           +NL +    T   A  I D +  S A DI +IDS+  ++
Sbjct: 146 ENLYLL---TSTDAEAIADTIA-SSAPDIAIIDSIQTMS 180


Searching..................................................done


Results from round 2




>gi|255764460|ref|YP_003064605.2| recombinase A [Candidatus Liberibacter asiaticus str. psy62]
 gi|254547811|gb|ACT56665.2| recombinase A [Candidatus Liberibacter asiaticus str. psy62]
          Length = 363

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 363/363 (100%), Positives = 363/363 (100%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG
Sbjct: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK
Sbjct: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS
Sbjct: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK
Sbjct: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS
Sbjct: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD
Sbjct: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360

Query: 361 NVE 363
           NVE
Sbjct: 361 NVE 363


>gi|90420927|ref|ZP_01228832.1| RecA [Aurantimonas manganoxydans SI85-9A1]
 gi|90334902|gb|EAS48674.1| RecA [Aurantimonas manganoxydans SI85-9A1]
          Length = 357

 Score =  411 bits (1056), Expect = e-113,   Method: Composition-based stats.
 Identities = 268/349 (76%), Positives = 313/349 (89%), Gaps = 1/349 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N +DK+KAL+AALSQI+R +GKG+IM+LG    I E IE VS+GSLGLDIALGIGG P
Sbjct: 10  EDNSLDKNKALDAALSQIERAFGKGSIMRLGENEKIVE-IETVSTGSLGLDIALGIGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR+VE+YGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRVVEVYGPESSGKTTLALHTIAEAQKKGGVCAFVDAEHALDPVYARKLGVDLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPGMQARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SISRSKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D +
Sbjct: 189 LTGSISRSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           TGNQT+VKVVKNK+A PFKQVEFDIMYGEG+S  GEL+DLGVK+ IV+KSGAWFS+  QR
Sbjct: 249 TGNQTKVKVVKNKLAPPFKQVEFDIMYGEGVSKTGELVDLGVKSGIVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           LGQGREN+K FLR+N  +A+ IE+L+RQNAGL+A+ LL +       DA
Sbjct: 309 LGQGRENAKSFLRDNPAVADEIETLIRQNAGLLAEQLLDDTGPGDDSDA 357


>gi|306840332|ref|ZP_07473104.1| recA protein [Brucella sp. BO2]
 gi|306289731|gb|EFM60920.1| recA protein [Brucella sp. BO2]
          Length = 389

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 261/352 (74%), Positives = 306/352 (86%), Gaps = 1/352 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG P
Sbjct: 38  EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 96

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 97  KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 156

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 157 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 216

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 217 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 276

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 277 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 336

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           LGQGREN+K +L++N E+A  IE+ LRQNAGL+A+  L +           +
Sbjct: 337 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDDGGPEEDAAGAAE 388


>gi|148559731|ref|YP_001259122.1| recombinase A [Brucella ovis ATCC 25840]
 gi|148370988|gb|ABQ60967.1| protein RecA [Brucella ovis ATCC 25840]
          Length = 424

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 261/352 (74%), Positives = 306/352 (86%), Gaps = 1/352 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG P
Sbjct: 73  EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 131

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 132 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 191

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 192 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 251

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 252 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 311

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 312 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 371

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           LGQGREN+K +L++N E+A  IE+ LRQNAGL+A+  L +           +
Sbjct: 372 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDDGGPEEDAAGAAE 423


>gi|297248509|ref|ZP_06932227.1| recombinase A [Brucella abortus bv. 5 str. B3196]
 gi|17982728|gb|AAL51968.1| reca protein [Brucella melitensis bv. 1 str. 16M]
 gi|297175678|gb|EFH35025.1| recombinase A [Brucella abortus bv. 5 str. B3196]
          Length = 378

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 261/352 (74%), Positives = 306/352 (86%), Gaps = 1/352 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG P
Sbjct: 27  EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 85

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 86  KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 145

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 146 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 205

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 206 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 265

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 266 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 325

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           LGQGREN+K +L++N E+A  IE+ LRQNAGL+A+  L +           +
Sbjct: 326 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDDGGPEEDAAGAAE 377


>gi|153009316|ref|YP_001370531.1| recombinase A [Ochrobactrum anthropi ATCC 49188]
 gi|166220662|sp|A6X0E8|RECA_OCHA4 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|151561204|gb|ABS14702.1| recA protein [Ochrobactrum anthropi ATCC 49188]
          Length = 361

 Score =  410 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 263/352 (74%), Positives = 311/352 (88%), Gaps = 3/352 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE V +GSL LDIALG+GG P
Sbjct: 10  EENSVDKTKALDAALSQIERAFGKGSIMRLGKNAPVIE-IETVPTGSLSLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 189 LTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE--PAINTKDDAD 355
           LGQGREN+K +L++N E+A  IE+ LRQNAGL+A+  L++  P  +  D A+
Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLEDGGPEDDAGDAAE 360


>gi|315122763|ref|YP_004063252.1| recombinase A [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313496165|gb|ADR52764.1| recombinase A [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 348

 Score =  410 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 306/348 (87%), Positives = 336/348 (96%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL+AALSQI+R+YGKG+IMQLGSQ SI EG+EVVSSGSLGLDIALGIGGFPKGRI
Sbjct: 1   MDKSKALDAALSQIERLYGKGSIMQLGSQSSISEGVEVVSSGSLGLDIALGIGGFPKGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH IAQSQK GGTCAFVDAEHALDS+YARKLGVDLKNLLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALHAIAQSQKAGGTCAFVDAEHALDSVYARKLGVDLKNLLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITDMLVRSGAVDIIV+DSVAALTPRAEIEGDMGESLPG+QARLMSQALRKLT S
Sbjct: 121 GEQALEITDMLVRSGAVDIIVVDSVAALTPRAEIEGDMGESLPGLQARLMSQALRKLTGS 180

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ISRS CIL+FINQ+RMKIGVMFGSPETTTGGNALKFY+S+RLDIRR+G+IK+KD+I GNQ
Sbjct: 181 ISRSNCILIFINQIRMKIGVMFGSPETTTGGNALKFYASIRLDIRRIGAIKEKDAIVGNQ 240

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMASPFKQVEFDIMYGEGIS  GELIDLGVKASIVDKSGAWFS+KGQRLGQG
Sbjct: 241 TRVKVVKNKMASPFKQVEFDIMYGEGISRVGELIDLGVKASIVDKSGAWFSYKGQRLGQG 300

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           REN+K+FLR+N+E+A +I++LLRQNAGLV+D LLQEPAINT+DDA+ +
Sbjct: 301 RENAKVFLRDNVEVASDIDNLLRQNAGLVSDILLQEPAINTRDDANVE 348


>gi|225627673|ref|ZP_03785710.1| recA protein [Brucella ceti str. Cudo]
 gi|225617678|gb|EEH14723.1| recA protein [Brucella ceti str. Cudo]
          Length = 424

 Score =  410 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 261/352 (74%), Positives = 306/352 (86%), Gaps = 1/352 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG P
Sbjct: 73  EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 131

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 132 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 191

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 192 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 251

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 252 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 311

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 312 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 371

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           LGQGREN+K +L++N E+A  IE+ LRQNAGL+A+  L +           +
Sbjct: 372 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDDGGPEEDAAGAAE 423


>gi|89473577|emb|CAJ34601.1| recombinase A [Ochrobactrum lupini]
 gi|89473579|emb|CAJ34602.1| recombinase A [Ochrobactrum anthropi]
 gi|90818638|emb|CAJ32624.1| recombinase A [Ochrobactrum anthropi ATCC 49188]
 gi|90818640|emb|CAJ32625.1| recombinase A [Ochrobactrum anthropi]
 gi|90818642|emb|CAJ32626.1| recombinase A [Ochrobactrum tritici]
 gi|90818654|emb|CAJ32632.1| recombinase A [Ochrobactrum anthropi]
 gi|90818660|emb|CAJ32635.1| recombinase A [Ochrobactrum anthropi]
 gi|90818662|emb|CAJ32636.1| recombinase A [Ochrobactrum anthropi]
 gi|90818674|emb|CAJ43897.1| recombinase A [Ochrobactrum anthropi]
          Length = 355

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 260/346 (75%), Positives = 306/346 (88%), Gaps = 1/346 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE V +GSL LDIALG+GG P
Sbjct: 10  EENSVDKTKALDAALSQIERAFGKGSIMRLGKNAPVIE-IETVPTGSLSLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 189 LTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           LGQGREN+K +L++N E+A  IE+ LRQNAGL+A+  L++      
Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLEDGGPEED 354


>gi|237815621|ref|ZP_04594618.1| recA protein [Brucella abortus str. 2308 A]
 gi|237788919|gb|EEP63130.1| recA protein [Brucella abortus str. 2308 A]
          Length = 424

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 261/352 (74%), Positives = 306/352 (86%), Gaps = 1/352 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG P
Sbjct: 73  EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 131

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 132 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 191

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 192 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 251

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 252 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 311

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 312 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 371

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           LGQGREN+K +L++N E+A  IE+ LRQNAGL+A+  L +           +
Sbjct: 372 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDDGGPEEDAAGAAE 423


>gi|90818648|emb|CAJ32629.1| recombinase A [Ochrobactrum anthropi]
          Length = 355

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 263/346 (76%), Positives = 309/346 (89%), Gaps = 1/346 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG P
Sbjct: 10  EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDKVVE-IETVSTGSLSLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 189 LTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           LGQGREN+K++L+EN E+A  IE+ LRQNAGL+A+ LL++      
Sbjct: 309 LGQGRENAKLYLKENPEVAREIETTLRQNAGLIAEQLLEDGGPEED 354


>gi|13470353|ref|NP_101919.1| recombinase A [Mesorhizobium loti MAFF303099]
 gi|20178054|sp|Q98NQ6|RECA_RHILO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|14021092|dbj|BAB47705.1| recombination protein; RecA [Mesorhizobium loti MAFF303099]
          Length = 365

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 260/354 (73%), Positives = 308/354 (87%), Gaps = 1/354 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P
Sbjct: 10  EDKAVDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  RGRIIEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SISRS  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+KD+D +
Sbjct: 189 LTASISRSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDRDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFK VEFDIMYGEG+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKLAPPFKVVEFDIMYGEGVSKTGELVDLGVKAGVVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           LGQGREN+K+FLR+N + A  IE  LRQNAGL+A+  L+       DD  +D+ 
Sbjct: 309 LGQGRENAKLFLRDNPDTAREIELALRQNAGLIAEKFLENGGSEGGDDGFEDEA 362


>gi|90818644|emb|CAJ32627.1| recombinase A [Ochrobactrum anthropi]
 gi|90818646|emb|CAJ32628.1| recombinase A [Ochrobactrum anthropi]
          Length = 355

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 261/346 (75%), Positives = 307/346 (88%), Gaps = 1/346 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG P
Sbjct: 10  EENSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 189 LTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           LGQGREN+K +L++N E+A  IE+ LRQNAGL+A+  L++      
Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLEDGGPEED 354


>gi|90818650|emb|CAJ32630.1| recombinase A [Ochrobactrum anthropi]
 gi|90818652|emb|CAJ32631.1| recombinase A [Ochrobactrum anthropi]
 gi|90818666|emb|CAJ32638.1| recombinase A [Ochrobactrum intermedium]
          Length = 355

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 261/346 (75%), Positives = 306/346 (88%), Gaps = 1/346 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG P
Sbjct: 10  EENSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 189 LTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           LGQGREN+K +L++N E+A  IE+ LRQNAGL+A+  L +      
Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDDGGPEED 354


>gi|90818656|emb|CAJ32633.1| recombinase A [Ochrobactrum anthropi]
          Length = 355

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 260/346 (75%), Positives = 306/346 (88%), Gaps = 1/346 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE V +GSL LDIALG+GG P
Sbjct: 10  EENSVDKTKALDAALSQIERAFGKGSIMRLGKNAPVIE-IETVPTGSLSLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 189 LTASISRSSCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           LGQGREN+K +L++N E+A  IE+ LRQNAGL+A+  L++      
Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLEDGGPEED 354


>gi|90818668|emb|CAJ32639.1| recombinase A [Ochrobactrum tritici]
          Length = 355

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 260/346 (75%), Positives = 306/346 (88%), Gaps = 1/346 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE V +GSL LDIALG+GG P
Sbjct: 10  EENSVDKTKALDAALSQIERAFGKGSIMRLGKNAPVIE-IETVPTGSLSLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 189 LTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           LGQGREN+K +L++N E+A  IE+ LRQNAGL+A+  L++      
Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLEDGGPEED 354


>gi|89473563|emb|CAJ34594.1| recombinase A [Brucella abortus]
 gi|89473565|emb|CAJ34595.1| recombinase A [Brucella canis]
 gi|89473567|emb|CAJ34596.1| recombinase A [Brucella neotomae]
 gi|89473569|emb|CAJ34597.1| recombinase A [Brucella ovis]
 gi|89473571|emb|CAJ34598.1| recombinase A [Brucella suis 1330]
 gi|89473573|emb|CAJ34599.1| recombinase A [Brucella pinnipedialis]
 gi|89473575|emb|CAJ34600.1| recombinase A [Brucella ceti]
 gi|90818664|emb|CAJ32637.1| recombinase A [Brucella melitensis]
          Length = 355

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 261/346 (75%), Positives = 305/346 (88%), Gaps = 1/346 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG P
Sbjct: 10  EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 189 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           LGQGREN+K +L++N E+A  IE+ LRQNAGL+A+  L +      
Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDDGGPEED 354


>gi|260758162|ref|ZP_05870510.1| recombinase A [Brucella abortus bv. 4 str. 292]
 gi|260761988|ref|ZP_05874331.1| recombinase A [Brucella abortus bv. 2 str. 86/8/59]
 gi|260668480|gb|EEX55420.1| recombinase A [Brucella abortus bv. 4 str. 292]
 gi|260672420|gb|EEX59241.1| recombinase A [Brucella abortus bv. 2 str. 86/8/59]
          Length = 420

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 261/352 (74%), Positives = 306/352 (86%), Gaps = 1/352 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG P
Sbjct: 69  EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 127

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 128 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 187

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 188 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 247

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 248 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 307

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 308 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 367

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           LGQGREN+K +L++N E+A  IE+ LRQNAGL+A+  L +           +
Sbjct: 368 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDDGGPEEDAAGAAE 419


>gi|319784063|ref|YP_004143539.1| recA protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169951|gb|ADV13489.1| recA protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 365

 Score =  408 bits (1049), Expect = e-112,   Method: Composition-based stats.
 Identities = 259/354 (73%), Positives = 309/354 (87%), Gaps = 1/354 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P
Sbjct: 10  EDKAVDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  RGRIIEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SISRS  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+KD+D +
Sbjct: 189 LTASISRSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDRDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFK VEFDIMYGEG+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKLAPPFKVVEFDIMYGEGVSKTGELVDLGVKAGVVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           LGQGREN+K+FLR+N + A  IE  LRQNAGL+A+  L+       DD  ++++
Sbjct: 309 LGQGRENAKLFLRDNPDTAREIELALRQNAGLIAEKFLENGGSEGGDDGFEEES 362


>gi|90818658|emb|CAJ32634.1| recombinase A [Ochrobactrum anthropi]
          Length = 355

 Score =  408 bits (1048), Expect = e-112,   Method: Composition-based stats.
 Identities = 259/346 (74%), Positives = 305/346 (88%), Gaps = 1/346 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE V +GSL LDIALG+GG P
Sbjct: 10  EENSVDKTKALDAALSQIERAFGKGSIMRLGKNAPVIE-IETVPTGSLSLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDALVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 189 LTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           LGQGREN+K +L++N E+A  IE+ LRQNAGL+ +  L++      
Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLMPEQFLEDGGPEED 354


>gi|110633616|ref|YP_673824.1| recombinase A [Mesorhizobium sp. BNC1]
 gi|123058023|sp|Q11IW6|RECA_MESSB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|110284600|gb|ABG62659.1| RecA protein [Chelativorans sp. BNC1]
          Length = 360

 Score =  408 bits (1047), Expect = e-112,   Method: Composition-based stats.
 Identities = 264/351 (75%), Positives = 310/351 (88%), Gaps = 1/351 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE +S+GSLGLDIALG+GG P
Sbjct: 10  EENGVDKSKALDAALSQIERAFGKGSIMRLGANDKVVE-IETISTGSLGLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+EIYGPESSGKTTLALHT+A++QK GG C F+DAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  RGRIIEIYGPESSGKTTLALHTVAEAQKKGGICGFIDAEHALDPVYARKLGVDLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEI D LVRSGAVD+IV+DSVAALTPRAEIEG+MGESLPGMQARLMSQALRK
Sbjct: 129 QPDTGEQALEICDTLVRSGAVDVIVVDSVAALTPRAEIEGEMGESLPGMQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SISRS  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+KD++  
Sbjct: 189 LTASISRSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDREET 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA +V+K+GAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGVVEKAGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           LGQGREN+K+FLR+N E+A  IE  LRQNAGL+A+  L+     + DDA +
Sbjct: 309 LGQGRENAKLFLRDNPEVAREIELALRQNAGLIAERFLEADKDGSLDDAAE 359


>gi|23502079|ref|NP_698206.1| recombinase A [Brucella suis 1330]
 gi|62290113|ref|YP_221906.1| recombinase A [Brucella abortus bv. 1 str. 9-941]
 gi|82700036|ref|YP_414610.1| recombinase A [Brucella melitensis biovar Abortus 2308]
 gi|161619157|ref|YP_001593044.1| recombinase A [Brucella canis ATCC 23365]
 gi|189024351|ref|YP_001935119.1| RecA bacterial DNA recombination protein [Brucella abortus S19]
 gi|225852698|ref|YP_002732931.1| recombinase A [Brucella melitensis ATCC 23457]
 gi|229220681|ref|NP_539704.2| recombinase A [Brucella melitensis bv. 1 str. 16M]
 gi|260546662|ref|ZP_05822401.1| recombinase A [Brucella abortus NCTC 8038]
 gi|260565545|ref|ZP_05836029.1| recombinase A [Brucella melitensis bv. 1 str. 16M]
 gi|260566268|ref|ZP_05836738.1| recombinase A [Brucella suis bv. 4 str. 40]
 gi|260754946|ref|ZP_05867294.1| recombinase A [Brucella abortus bv. 6 str. 870]
 gi|261214198|ref|ZP_05928479.1| recombinase A [Brucella abortus bv. 3 str. Tulya]
 gi|261219550|ref|ZP_05933831.1| recombinase A [Brucella ceti M13/05/1]
 gi|261314076|ref|ZP_05953273.1| recombinase [Brucella pinnipedialis M163/99/10]
 gi|261317836|ref|ZP_05957033.1| recombinase A [Brucella pinnipedialis B2/94]
 gi|261322045|ref|ZP_05961242.1| recombinase A [Brucella ceti M644/93/1]
 gi|261752510|ref|ZP_05996219.1| recombinase A [Brucella suis bv. 5 str. 513]
 gi|261755169|ref|ZP_05998878.1| recombinase A [Brucella suis bv. 3 str. 686]
 gi|261758393|ref|ZP_06002102.1| recombinase A [Brucella sp. F5/99]
 gi|265984260|ref|ZP_06096995.1| recombinase A [Brucella sp. 83/13]
 gi|265999433|ref|ZP_05466343.2| recombinase A [Brucella melitensis bv. 2 str. 63/9]
 gi|306838011|ref|ZP_07470869.1| recA protein [Brucella sp. NF 2653]
 gi|306844103|ref|ZP_07476697.1| recA protein [Brucella sp. BO1]
 gi|54039031|sp|P65976|RECA_BRUSU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|54041791|sp|P65975|RECA_BRUME RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|68067733|sp|Q04761|RECA_BRUAB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123768490|sp|Q2YRU7|RECA_BRUA2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|189039591|sp|A9M5L8|RECA_BRUC2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238689380|sp|B2S648|RECA_BRUA1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|254790424|sp|C0RJG9|RECA_BRUMB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|23348037|gb|AAN30121.1| recA protein [Brucella suis 1330]
 gi|62196245|gb|AAX74545.1| RecA, recA protein [Brucella abortus bv. 1 str. 9-941]
 gi|82616137|emb|CAJ11180.1| RecA bacterial DNA recombination protein:ATP/GTP-binding site motif
           A (P-loop):AAA ATPase [Brucella melitensis biovar
           Abortus 2308]
 gi|161335968|gb|ABX62273.1| recA protein [Brucella canis ATCC 23365]
 gi|189019923|gb|ACD72645.1| RecA bacterial DNA recombination protein [Brucella abortus S19]
 gi|225641063|gb|ACO00977.1| recA protein [Brucella melitensis ATCC 23457]
 gi|260095712|gb|EEW79589.1| recombinase A [Brucella abortus NCTC 8038]
 gi|260151613|gb|EEW86707.1| recombinase A [Brucella melitensis bv. 1 str. 16M]
 gi|260155786|gb|EEW90866.1| recombinase A [Brucella suis bv. 4 str. 40]
 gi|260675054|gb|EEX61875.1| recombinase A [Brucella abortus bv. 6 str. 870]
 gi|260915805|gb|EEX82666.1| recombinase A [Brucella abortus bv. 3 str. Tulya]
 gi|260924639|gb|EEX91207.1| recombinase A [Brucella ceti M13/05/1]
 gi|261294735|gb|EEX98231.1| recombinase A [Brucella ceti M644/93/1]
 gi|261297059|gb|EEY00556.1| recombinase A [Brucella pinnipedialis B2/94]
 gi|261303102|gb|EEY06599.1| recombinase [Brucella pinnipedialis M163/99/10]
 gi|261738377|gb|EEY26373.1| recombinase A [Brucella sp. F5/99]
 gi|261742263|gb|EEY30189.1| recombinase A [Brucella suis bv. 5 str. 513]
 gi|261744922|gb|EEY32848.1| recombinase A [Brucella suis bv. 3 str. 686]
 gi|263093939|gb|EEZ17873.1| recombinase A [Brucella melitensis bv. 2 str. 63/9]
 gi|264662852|gb|EEZ33113.1| recombinase A [Brucella sp. 83/13]
 gi|306275546|gb|EFM57278.1| recA protein [Brucella sp. BO1]
 gi|306406935|gb|EFM63156.1| recA protein [Brucella sp. NF 2653]
          Length = 361

 Score =  408 bits (1047), Expect = e-112,   Method: Composition-based stats.
 Identities = 261/352 (74%), Positives = 306/352 (86%), Gaps = 1/352 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG P
Sbjct: 10  EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 189 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           LGQGREN+K +L++N E+A  IE+ LRQNAGL+A+  L +           +
Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDDGGPEEDAAGAAE 360


>gi|288958054|ref|YP_003448395.1| recombination protein [Azospirillum sp. B510]
 gi|288910362|dbj|BAI71851.1| recombination protein [Azospirillum sp. B510]
          Length = 359

 Score =  408 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 248/351 (70%), Positives = 304/351 (86%), Gaps = 1/351 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DK KAL+AALSQI+R +GKG+IM+LG++ ++ E  EVVS+GSLGLDIALGIGG P
Sbjct: 10  EKDSMDKQKALDAALSQIERAFGKGSIMKLGARENLVE-TEVVSTGSLGLDIALGIGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRIVEIYGPESSGKTTLALH IAQ+QK GGTCAFVDAEHALD  YARKLGV++  LLIS
Sbjct: 69  RGRIVEIYGPESSGKTTLALHAIAQAQKNGGTCAFVDAEHALDPSYARKLGVNIDELLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EG+MG+S  G+ ARLMSQALRK
Sbjct: 129 QPDAGEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDSHVGLHARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SI++S C+++FINQ+R+KIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIKD+D++
Sbjct: 189 LTGSIAKSNCLVIFINQIRLKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKDRDTV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNKMA PF+ VEFDIMYGEG+S  GEL+DLG++A +VDKSGAWFS+ G R
Sbjct: 249 VGNQTRVKVVKNKMAPPFRVVEFDIMYGEGVSKVGELLDLGIQAGVVDKSGAWFSYDGTR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           +GQGREN+K FLR N E+A+ IE+ +R NAGLVAD+++  P  + +    +
Sbjct: 309 IGQGRENAKTFLRNNPEMADAIEAKIRGNAGLVADAMMGTPETDGEASTPE 359


>gi|256369626|ref|YP_003107136.1| recombinase A [Brucella microti CCM 4915]
 gi|255999788|gb|ACU48187.1| recombinase A [Brucella microti CCM 4915]
          Length = 361

 Score =  408 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 261/352 (74%), Positives = 307/352 (87%), Gaps = 1/352 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG P
Sbjct: 10  EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 189 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           LGQGREN+K +L++N E+A  IE++LRQNAGL+A+  L +           +
Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETMLRQNAGLIAEQFLDDGGPEEDAAGAAE 360


>gi|258541148|ref|YP_003186581.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-01]
 gi|256632226|dbj|BAH98201.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-01]
 gi|256635283|dbj|BAI01252.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-03]
 gi|256638338|dbj|BAI04300.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-07]
 gi|256641392|dbj|BAI07347.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-22]
 gi|256644447|dbj|BAI10395.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-26]
 gi|256647502|dbj|BAI13443.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-32]
 gi|256650555|dbj|BAI16489.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256653546|dbj|BAI19473.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-12]
          Length = 398

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 243/351 (69%), Positives = 301/351 (85%), Gaps = 2/351 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
            +RK M  +DK+KALE AL QI+R +GKG++M+LG +  +   +  + +GSLGLDIALGI
Sbjct: 50  AHRKGMVKMDKAKALEGALGQIERAFGKGSVMRLGQRPKVEADV--IPTGSLGLDIALGI 107

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GR+VEIYGPESSGKTTLALH IA++QK GGTCAF+DAEHALD  YA+KLGVD+ N
Sbjct: 108 GGLPRGRVVEIYGPESSGKTTLALHAIAEAQKRGGTCAFIDAEHALDPSYAKKLGVDVDN 167

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLISQPDTGEQALEI D LVRSGA+D++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQ
Sbjct: 168 LLISQPDTGEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQ 227

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT +++RS  +++F+NQ+R+KIGVMFG+PETTTGGNALKFYSSVR+DIRR+GSIKD
Sbjct: 228 ALRKLTGTVARSNTLMIFLNQIRLKIGVMFGNPETTTGGNALKFYSSVRMDIRRIGSIKD 287

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
           KD +TGNQTRVKVVKNKMA PF+QVEFDIMYGEGIS  GELIDLGVKA +V+KSGAWFS+
Sbjct: 288 KDEVTGNQTRVKVVKNKMAPPFRQVEFDIMYGEGISKVGELIDLGVKAGVVEKSGAWFSY 347

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
             QR+GQGREN+K FLR++ E+A +IE  +R++AG+VA++++  P     D
Sbjct: 348 DSQRIGQGRENAKQFLRDHPEMAADIERRVREHAGVVAEAMMVAPEHQEGD 398


>gi|241204889|ref|YP_002975985.1| recombinase A [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240858779|gb|ACS56446.1| recA protein [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 364

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 267/357 (74%), Positives = 312/357 (87%), Gaps = 2/357 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P
Sbjct: 10  EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  RGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SIS+S  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ +
Sbjct: 189 LTASISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QR
Sbjct: 249 IGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           LGQGREN+K FLR+N ++A  IE  LRQNAGL+AD  LQ       DD D D +  +
Sbjct: 309 LGQGRENAKTFLRDNPDLAREIELSLRQNAGLIADRFLQNGGPE-PDDGDGDASAEM 364


>gi|209549552|ref|YP_002281469.1| recombinase A [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|226723636|sp|B5ZRG2|RECA_RHILW RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|209535308|gb|ACI55243.1| recA protein [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 362

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 263/347 (75%), Positives = 308/347 (88%), Gaps = 1/347 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P
Sbjct: 10  EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  RGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SIS+S  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ +
Sbjct: 189 LTASISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QR
Sbjct: 249 IGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           LGQGREN+K FLR+N ++A  IE  LRQNAGL+AD  LQ    +  D
Sbjct: 309 LGQGRENAKTFLRDNPDLAREIELSLRQNAGLIADRFLQNGGPDPDD 355


>gi|163843467|ref|YP_001627871.1| recombinase A [Brucella suis ATCC 23445]
 gi|189039592|sp|B0CH00|RECA_BRUSI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|163674190|gb|ABY38301.1| recA protein [Brucella suis ATCC 23445]
          Length = 361

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 261/352 (74%), Positives = 306/352 (86%), Gaps = 1/352 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG P
Sbjct: 10  EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 189 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 249 MGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           LGQGREN+K +L++N E+A  IE+ LRQNAGL+A+  L +           +
Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDDGGPEEDAAGAAE 360


>gi|256061282|ref|ZP_05451432.1| recombinase A [Brucella neotomae 5K33]
 gi|261325290|ref|ZP_05964487.1| recombinase A [Brucella neotomae 5K33]
 gi|261301270|gb|EEY04767.1| recombinase A [Brucella neotomae 5K33]
          Length = 348

 Score =  404 bits (1039), Expect = e-111,   Method: Composition-based stats.
 Identities = 261/345 (75%), Positives = 308/345 (89%), Gaps = 3/345 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KAL+AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG PKGRI
Sbjct: 1   MDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 60  VEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT S
Sbjct: 120 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTGS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQ
Sbjct: 180 ISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QRLGQG
Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           REN+K +L++N E+A  IE+ LRQNAGL+A+  L +    T++DA
Sbjct: 300 RENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDDG--GTEEDA 342


>gi|222148885|ref|YP_002549842.1| recombinase A [Agrobacterium vitis S4]
 gi|254790418|sp|B9JX56|RECA_AGRVS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|221735871|gb|ACM36834.1| RecA protein [Agrobacterium vitis S4]
          Length = 362

 Score =  404 bits (1039), Expect = e-111,   Method: Composition-based stats.
 Identities = 269/354 (75%), Positives = 310/354 (87%), Gaps = 1/354 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LG+   I E +E VS+GSL LDIALGIGG P
Sbjct: 10  EDKTVDKSKALEAALSQIERSFGKGSIMKLGANEKIVE-VETVSTGSLSLDIALGIGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRIIEIYGPESSGKTTLALQTIAEAQKKGGVCAFVDAEHALDPVYARKLGVDLQNLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++VIDSVAALTP+AEIEG+MG+SLPGMQARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPKAEIEGEMGDSLPGMQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SISRS C++VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++KD++ I
Sbjct: 189 LTGSISRSNCMVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKDREEI 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+K+GAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKAGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           LGQGREN+KIFLR+N  +A+ IE+ LRQNAGL+A+  L+    +  D    DD 
Sbjct: 309 LGQGRENAKIFLRDNPAVADEIETALRQNAGLIAERFLENGGPDANDSVGLDDA 362


>gi|254689422|ref|ZP_05152676.1| recombinase A [Brucella abortus bv. 6 str. 870]
 gi|254693907|ref|ZP_05155735.1| recombinase A [Brucella abortus bv. 3 str. Tulya]
 gi|254697557|ref|ZP_05159385.1| recombinase A [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701942|ref|ZP_05163770.1| recombinase A [Brucella suis bv. 5 str. 513]
 gi|254704487|ref|ZP_05166315.1| recombinase A [Brucella suis bv. 3 str. 686]
 gi|254706617|ref|ZP_05168445.1| recombinase A [Brucella pinnipedialis M163/99/10]
 gi|254710273|ref|ZP_05172084.1| recombinase A [Brucella pinnipedialis B2/94]
 gi|254714270|ref|ZP_05176081.1| recombinase A [Brucella ceti M644/93/1]
 gi|254717707|ref|ZP_05179518.1| recombinase A [Brucella ceti M13/05/1]
 gi|254719260|ref|ZP_05181071.1| recombinase A [Brucella sp. 83/13]
 gi|254730451|ref|ZP_05189029.1| recombinase A [Brucella abortus bv. 4 str. 292]
 gi|256031767|ref|ZP_05445381.1| recombinase A [Brucella pinnipedialis M292/94/1]
 gi|256044852|ref|ZP_05447756.1| recombinase A [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113756|ref|ZP_05454560.1| recombinase A [Brucella melitensis bv. 3 str. Ether]
 gi|256159937|ref|ZP_05457655.1| recombinase A [Brucella ceti M490/95/1]
 gi|256255168|ref|ZP_05460704.1| recombinase A [Brucella ceti B1/94]
 gi|256257668|ref|ZP_05463204.1| recombinase A [Brucella abortus bv. 9 str. C68]
 gi|260168901|ref|ZP_05755712.1| recombinase A [Brucella sp. F5/99]
 gi|260883955|ref|ZP_05895569.1| recombinase A [Brucella abortus bv. 9 str. C68]
 gi|261222365|ref|ZP_05936646.1| recombinase A [Brucella ceti B1/94]
 gi|265988866|ref|ZP_06101423.1| recombinase A [Brucella pinnipedialis M292/94/1]
 gi|265991280|ref|ZP_06103837.1| recombinase A [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995117|ref|ZP_06107674.1| recombinase A [Brucella melitensis bv. 3 str. Ether]
 gi|265998330|ref|ZP_06110887.1| recombinase A [Brucella ceti M490/95/1]
 gi|294852537|ref|ZP_06793210.1| RecA protein [Brucella sp. NVSL 07-0026]
 gi|260873483|gb|EEX80552.1| recombinase A [Brucella abortus bv. 9 str. C68]
 gi|260920949|gb|EEX87602.1| recombinase A [Brucella ceti B1/94]
 gi|262552798|gb|EEZ08788.1| recombinase A [Brucella ceti M490/95/1]
 gi|262766230|gb|EEZ12019.1| recombinase A [Brucella melitensis bv. 3 str. Ether]
 gi|263002064|gb|EEZ14639.1| recombinase A [Brucella melitensis bv. 1 str. Rev.1]
 gi|264661063|gb|EEZ31324.1| recombinase A [Brucella pinnipedialis M292/94/1]
 gi|294821126|gb|EFG38125.1| RecA protein [Brucella sp. NVSL 07-0026]
 gi|326409222|gb|ADZ66287.1| RecA bacterial DNA recombination protein [Brucella melitensis M28]
 gi|326538931|gb|ADZ87146.1| recA protein [Brucella melitensis M5-90]
          Length = 348

 Score =  404 bits (1039), Expect = e-111,   Method: Composition-based stats.
 Identities = 258/348 (74%), Positives = 304/348 (87%), Gaps = 1/348 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KAL+AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG PKGRI
Sbjct: 1   MDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 60  VEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT S
Sbjct: 120 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTGS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQ
Sbjct: 180 ISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QRLGQG
Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           REN+K +L++N E+A  IE+ LRQNAGL+A+  L +           +
Sbjct: 300 RENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDDGGPEEDAAGAAE 347


>gi|218463763|ref|ZP_03503854.1| recombinase A [Rhizobium etli Kim 5]
          Length = 362

 Score =  404 bits (1039), Expect = e-111,   Method: Composition-based stats.
 Identities = 265/353 (75%), Positives = 309/353 (87%), Gaps = 1/353 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P
Sbjct: 10  EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVIE-IETISTGSLGLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SIS+S  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ +
Sbjct: 189 LTASISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QR
Sbjct: 249 IGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           LGQGREN+K FLR+N ++A  IE  LRQNAGL+AD  LQ    +  D     +
Sbjct: 309 LGQGRENAKTFLRDNPDLAREIELALRQNAGLIADRFLQNGGPDADDGDSAAE 361


>gi|163759602|ref|ZP_02166687.1| recombinase A [Hoeflea phototrophica DFL-43]
 gi|162283199|gb|EDQ33485.1| recombinase A [Hoeflea phototrophica DFL-43]
          Length = 360

 Score =  404 bits (1039), Expect = e-111,   Method: Composition-based stats.
 Identities = 270/351 (76%), Positives = 314/351 (89%), Gaps = 1/351 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKAL+AALSQI+R +GKG+IM+LG+  S+ E IE + +GSLGLDIALG+GG P
Sbjct: 10  EEKSVDKSKALDAALSQIERSFGKGSIMKLGANESVVE-IETIPTGSLGLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRI+EIYGPESSGKTTLAL TIA++QK GG C F+DAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFIDAEHALDPVYARKLGVDLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGALDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K++D +
Sbjct: 189 LTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           TGNQTRVKVVKNKMA PFKQVEFDIMYGEG+S  GELIDLGVKA IV+KSGAWFS+  QR
Sbjct: 249 TGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELIDLGVKAGIVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           LGQGRENSK FLR+N  +AE IE LLRQNAGL+A+  L+E   + +DDA +
Sbjct: 309 LGQGRENSKQFLRDNPAVAEEIELLLRQNAGLIAEKFLEEDRSSGEDDAAE 359


>gi|325293276|ref|YP_004279140.1| recombinase A [Agrobacterium sp. H13-3]
 gi|325061129|gb|ADY64820.1| recombinase A [Agrobacterium sp. H13-3]
          Length = 363

 Score =  404 bits (1038), Expect = e-111,   Method: Composition-based stats.
 Identities = 269/354 (75%), Positives = 310/354 (87%), Gaps = 1/354 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E +S+GSL LDIALGIGG P
Sbjct: 10  EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETISTGSLSLDIALGIGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGAVDI+V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAVDILVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SIS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ +
Sbjct: 189 LTASISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           LGQGREN+K FLR+N E+A  IE  LRQNAGL+AD  LQ       +  D  D 
Sbjct: 309 LGQGRENAKTFLRDNPEMASEIELALRQNAGLIADRFLQNGGPEAGESDDGPDE 362


>gi|260460848|ref|ZP_05809098.1| recA protein [Mesorhizobium opportunistum WSM2075]
 gi|259033425|gb|EEW34686.1| recA protein [Mesorhizobium opportunistum WSM2075]
          Length = 353

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 257/350 (73%), Positives = 305/350 (87%), Gaps = 1/350 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 1   MDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 60  IEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 120 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ISRS  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+KD+D + GNQ
Sbjct: 180 ISRSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDRDEVVGNQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFK VEFDIMYGEG+S  GEL+DLGVKA +V+KSGAWFS+  QRLGQG
Sbjct: 240 TRVKVVKNKLAPPFKVVEFDIMYGEGVSKTGELVDLGVKAGVVEKSGAWFSYNSQRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           REN+K+FLR+N + A  IE  LRQNAGL+A+  L+        D   +D 
Sbjct: 300 RENAKLFLRDNPDTAREIELALRQNAGLIAEKFLENGGSEGNGDDGFEDE 349


>gi|116252383|ref|YP_768221.1| recombinase A [Rhizobium leguminosarum bv. viciae 3841]
 gi|122988509|sp|Q1MFZ8|RECA_RHIL3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|115257031|emb|CAK08125.1| putative recombinase [Rhizobium leguminosarum bv. viciae 3841]
          Length = 364

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 262/340 (77%), Positives = 306/340 (90%), Gaps = 1/340 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P
Sbjct: 10  EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  RGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SIS+S  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ +
Sbjct: 189 LTASISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QR
Sbjct: 249 IGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           LGQGREN+K FLR+N ++A  IE  LRQNAGL+AD  LQ 
Sbjct: 309 LGQGRENAKTFLRDNPDLAREIELSLRQNAGLIADRFLQN 348


>gi|86357938|ref|YP_469830.1| recombinase A [Rhizobium etli CFN 42]
 gi|123751994|sp|Q2K7T3|RECA_RHIEC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|86282040|gb|ABC91103.1| recombinase A protein [Rhizobium etli CFN 42]
          Length = 362

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 269/340 (79%), Positives = 307/340 (90%), Gaps = 1/340 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSLGLDIALGIGG P
Sbjct: 10  EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLGLDIALGIGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRI+EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRIIEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPGMQARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SIS+S C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ +
Sbjct: 189 LTASISKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           LGQGREN+K FLR+N ++A  IE  LRQNAGL+AD  LQ 
Sbjct: 309 LGQGRENAKTFLRDNPDLAREIELALRQNAGLIADRFLQN 348


>gi|190892009|ref|YP_001978551.1| recombinase A protein [Rhizobium etli CIAT 652]
 gi|238692491|sp|B3PPU4|RECA_RHIE6 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|190697288|gb|ACE91373.1| recombinase A protein [Rhizobium etli CIAT 652]
 gi|327190520|gb|EGE57614.1| recombinase A protein [Rhizobium etli CNPAF512]
          Length = 362

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 265/340 (77%), Positives = 306/340 (90%), Gaps = 1/340 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P
Sbjct: 10  EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVIE-IETISTGSLGLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRI+EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRIIEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SIS+S  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ +
Sbjct: 189 LTASISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QR
Sbjct: 249 IGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           LGQGREN+K FLR+N ++A  IE  LRQNAGL+AD  LQ 
Sbjct: 309 LGQGRENAKTFLRDNPDLAREIELALRQNAGLIADRFLQN 348


>gi|114707287|ref|ZP_01440184.1| recombinase A [Fulvimarina pelagi HTCC2506]
 gi|114537168|gb|EAU40295.1| recombinase A [Fulvimarina pelagi HTCC2506]
          Length = 357

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 266/349 (76%), Positives = 313/349 (89%), Gaps = 1/349 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG      E +E VS+GSLGLDIALGIGG P
Sbjct: 10  EDNSVDKTKALDAALSQIERAFGKGSIMKLGQNNQSVE-VETVSTGSLGLDIALGIGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR++EIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD IYARKLGVDL+NLL+S
Sbjct: 69  KGRVIEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPIYARKLGVDLENLLVS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPGMQARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SISRSKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIKD+D +
Sbjct: 189 LTGSISRSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKDRDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           TGNQT+VKVVKNK+A PFKQVEFDIMYGEG+S  GELIDLGVK+ IV+KSGAWFS+  QR
Sbjct: 249 TGNQTKVKVVKNKLAPPFKQVEFDIMYGEGVSKMGELIDLGVKSGIVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           LGQGREN+K FLR+N + A+ IE  +RQNAG++A+ LL++ A +  ++ 
Sbjct: 309 LGQGRENAKQFLRDNPDAAQEIEQSIRQNAGILAEKLLEDGAGSPSEEE 357


>gi|163794127|ref|ZP_02188100.1| RecA protein [alpha proteobacterium BAL199]
 gi|159180741|gb|EDP65260.1| RecA protein [alpha proteobacterium BAL199]
          Length = 360

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 248/356 (69%), Positives = 305/356 (85%), Gaps = 5/356 (1%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DKSKALEAALSQI+R +GKG++M+LG +    E I+ VS+GS+GLDIALGIGG P
Sbjct: 9   EKDGMDKSKALEAALSQIERAFGKGSVMKLGQREGAVE-IDTVSTGSIGLDIALGIGGLP 67

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GR+VEIYGPESSGKTTL+LH +A++QK GGTCAFVDAEHALD IYARKLGVD+  LLIS
Sbjct: 68  RGRVVEIYGPESSGKTTLSLHVVAEAQKAGGTCAFVDAEHALDPIYARKLGVDVDELLIS 127

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEI D LVRSGA+D++V+DSVAAL PRAE+EG+MG++  G+QARLMSQALRK
Sbjct: 128 QPDTGEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDTHVGLQARLMSQALRK 187

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SIS+S+C+++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IKD+D +
Sbjct: 188 LTGSISKSRCMVIFINQIRQKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKDRDEV 247

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PF+ VEFDIMYGEG+S  GEL+DLGV A IV+KSGAWFS  G R
Sbjct: 248 VGNQTRVKVVKNKLAPPFRVVEFDIMYGEGVSKMGELLDLGVNAGIVEKSGAWFSHGGNR 307

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           +GQGREN+K FLR+N ++A+ IE  +R+NAGLVAD++L    +   D  + D  D+
Sbjct: 308 IGQGRENAKTFLRQNPDVAQIIERKIRENAGLVADAML----VGDPDPGEGDSGDD 359


>gi|222086163|ref|YP_002544695.1| recombinase A protein [Agrobacterium radiobacter K84]
 gi|254790417|sp|B9JFS7|RECA_AGRRK RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|221723611|gb|ACM26767.1| recombinase A protein [Agrobacterium radiobacter K84]
          Length = 361

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 265/353 (75%), Positives = 309/353 (87%), Gaps = 1/353 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG P
Sbjct: 10  EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SIS+S  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ +
Sbjct: 189 LTASISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           LGQGREN+K+FLR+N ++A  IE  LRQNAGL+AD  LQ    +  D     +
Sbjct: 309 LGQGRENAKLFLRDNPDLAREIELSLRQNAGLIADRFLQNGGPDADDGEAAAE 361


>gi|159184959|ref|NP_354855.2| recombinase A [Agrobacterium tumefaciens str. C58]
 gi|417633|sp|P33156|RECA_AGRT5 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|159140237|gb|AAK87640.2| RecA protein [Agrobacterium tumefaciens str. C58]
          Length = 363

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 267/354 (75%), Positives = 310/354 (87%), Gaps = 1/354 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG P
Sbjct: 10  EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL++LLIS
Sbjct: 69  KGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SIS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ +
Sbjct: 189 LTASISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           LGQGREN+K FLR+N + A  IE  LRQNAGL+AD  LQ    +  +  D  D 
Sbjct: 309 LGQGRENAKTFLRDNPDTANEIELALRQNAGLIADRFLQNGGPDAGEGDDGSDE 362


>gi|218675164|ref|ZP_03524833.1| recombinase A [Rhizobium etli GR56]
          Length = 349

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 263/336 (78%), Positives = 305/336 (90%), Gaps = 1/336 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG PKGRI
Sbjct: 1   MDKSKALEAALSQIERSFGKGSIMKLGSNENVIE-IETISTGSLGLDIALGVGGLPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 60  IEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 120 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ
Sbjct: 180 ISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 240 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           REN+K FLR+N ++A  IE  LRQNAGL+AD  LQ 
Sbjct: 300 RENAKTFLRDNPDLAREIELALRQNAGLIADRFLQN 335


>gi|254292634|ref|YP_003058657.1| recA protein [Hirschia baltica ATCC 49814]
 gi|254041165|gb|ACT57960.1| recA protein [Hirschia baltica ATCC 49814]
          Length = 364

 Score =  403 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 251/357 (70%), Positives = 301/357 (84%), Gaps = 2/357 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N +DK KALE AL QI+R +GKG+IM+LG   S+   +E VS+GSL LDIALGIGG P
Sbjct: 10  ENNGMDKQKALETALGQIERNFGKGSIMRLGDNASM--DVEAVSTGSLSLDIALGIGGLP 67

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRI+EIYGPESSGKTTLALH IA++QK GG  AFVDAEHALD IYA KLGVDL +LL+S
Sbjct: 68  KGRIIEIYGPESSGKTTLALHCIAEAQKNGGVAAFVDAEHALDPIYAGKLGVDLGDLLVS 127

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQ+LEI D LVRSGAVD++VIDSVAALTPRAE+EG+MG+SLPG+QARLMSQALRK
Sbjct: 128 QPDTGEQSLEIADTLVRSGAVDVLVIDSVAALTPRAELEGEMGDSLPGLQARLMSQALRK 187

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SIS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++KD+D +
Sbjct: 188 LTGSISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGALKDRDEV 247

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PF+QVEFDI+YGEGIS  GELIDLGVKA +VDK+G+W+S+  +R
Sbjct: 248 IGNQTRVKVVKNKVAPPFRQVEFDIIYGEGISKTGELIDLGVKAGVVDKAGSWYSYGSER 307

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           +GQGREN++ FL+ N  IA  IE  +R +AGL+++ +L     N  D+ D D   N 
Sbjct: 308 IGQGRENARTFLKANPSIAAEIEEKIRADAGLISEEMLAAGQANITDEEDPDVAVNE 364


>gi|195970165|ref|NP_385905.2| recombinase A [Sinorhizobium meliloti 1021]
 gi|307302672|ref|ZP_07582428.1| recA protein [Sinorhizobium meliloti BL225C]
 gi|307318520|ref|ZP_07597954.1| recA protein [Sinorhizobium meliloti AK83]
 gi|187904183|emb|CAC46378.2| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti 1021]
 gi|306895860|gb|EFN26612.1| recA protein [Sinorhizobium meliloti AK83]
 gi|306903036|gb|EFN33627.1| recA protein [Sinorhizobium meliloti BL225C]
          Length = 361

 Score =  403 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 270/352 (76%), Positives = 310/352 (88%), Gaps = 1/352 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG P
Sbjct: 10  EDKSVDKSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SIS+S C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ +
Sbjct: 189 LTASISKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNKMA PFKQVEFDIMYGEG+S  GELIDLGVKA IV+KSGAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELIDLGVKAGIVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           LGQGREN+K+FLREN E+   IE+ LRQNAGL+AD  L+     +  D   D
Sbjct: 309 LGQGRENAKLFLRENPELLREIETALRQNAGLIADRFLENGGPESDGDEAAD 360


>gi|144123|gb|AAA22999.1| RecA protein [Brucella abortus]
          Length = 360

 Score =  403 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 256/352 (72%), Positives = 302/352 (85%), Gaps = 2/352 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG P
Sbjct: 10  EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGV L+NLLIS
Sbjct: 69  KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVHLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QP TGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+S  G+QARLMSQA+RK
Sbjct: 129 QPITGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSH-GLQARLMSQAVRK 187

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D +
Sbjct: 188 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 247

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QR
Sbjct: 248 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 307

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           LGQGREN+K +L++N E+A  IE+ LRQNAGL+A+  L +           +
Sbjct: 308 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDDGGPEEDAAGAAE 359


>gi|114328048|ref|YP_745205.1| recombinase A [Granulibacter bethesdensis CGDNIH1]
 gi|84620800|gb|ABC59514.1| RecA [Granulibacter bethesdensis CGDNIH1]
 gi|114316222|gb|ABI62282.1| recA protein [Granulibacter bethesdensis CGDNIH1]
          Length = 351

 Score =  403 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 240/346 (69%), Positives = 301/346 (86%), Gaps = 1/346 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           ++K+KAL+AAL+QI+R +GKG+IM++G++ ++ E IEV+ SGSLGLD+ALGIGG P+GRI
Sbjct: 7   MEKNKALDAALAQIERSFGKGSIMRMGAR-NVAEQIEVIPSGSLGLDLALGIGGMPRGRI 65

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GGTCAFVDAEHALD IYARKLGVD+ NLLISQPD 
Sbjct: 66  VEIYGPESSGKTTLALHTVAEAQKRGGTCAFVDAEHALDPIYARKLGVDVDNLLISQPDA 125

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EG+MG+S  G+ ARLMSQALRKLT S
Sbjct: 126 GEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDSHVGLHARLMSQALRKLTGS 185

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++RS   L+F+NQ+RMKIGVMFGSPETTTGGNALKFY+SVR DIRR+G +KDK+ + GNQ
Sbjct: 186 VNRSNTTLIFLNQIRMKIGVMFGSPETTTGGNALKFYASVRFDIRRIGQLKDKEEVIGNQ 245

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PF+QVEFDI+YGEGIS  GELIDLGVKA++V+KSGAW+S+  QR+GQG
Sbjct: 246 TRVKVVKNKLAPPFRQVEFDIIYGEGISKVGELIDLGVKANVVEKSGAWYSYDSQRIGQG 305

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           REN+K FLR++ EIA  IE+ +R+ +G V ++++  P     + A+
Sbjct: 306 RENAKQFLRDHPEIANAIENRIREQSGTVQNAMITTPDAEEAETAE 351


>gi|150396733|ref|YP_001327200.1| recombinase A [Sinorhizobium medicae WSM419]
 gi|166220683|sp|A6U9N5|RECA_SINMW RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|150028248|gb|ABR60365.1| recA protein [Sinorhizobium medicae WSM419]
          Length = 361

 Score =  403 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 269/352 (76%), Positives = 311/352 (88%), Gaps = 1/352 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG P
Sbjct: 10  EDKSVDKSKALEAALSQIERAFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLIS
Sbjct: 69  KGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SIS+S C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ +
Sbjct: 189 LTASISKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNKMA PFKQVEFDIMYGEG+S  GELIDLGVKA IV+KSGAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELIDLGVKAGIVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           LGQGREN+K+FLR+N E+   IE+ LRQNAGL+AD  L+     ++ D   D
Sbjct: 309 LGQGRENAKLFLRDNPELLREIETALRQNAGLIADRFLENGGPESEGDEAAD 360


>gi|227822194|ref|YP_002826165.1| recombinase A [Sinorhizobium fredii NGR234]
 gi|254790442|sp|C3MD93|RECA_RHISN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|227341194|gb|ACP25412.1| RecA protein [Sinorhizobium fredii NGR234]
          Length = 361

 Score =  402 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 267/352 (75%), Positives = 310/352 (88%), Gaps = 1/352 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG P
Sbjct: 10  EDKSVDKSKALEAALSQIERSFGKGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SIS+S C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ +
Sbjct: 189 LTASISKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNKMA PFKQVEFDIMYGEG+S  GELIDLGVKA IV+KSGAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELIDLGVKAGIVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           LGQGREN+K+FLR+N ++   IE  LRQNAGL+AD  L+     ++ D   D
Sbjct: 309 LGQGRENAKLFLRDNPDLLREIEMALRQNAGLIADKFLENGGPESEGDEAAD 360


>gi|132236|sp|P24074|RECA_RHILV RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|581514|emb|CAA42578.1| RecA protein [Rhizobium leguminosarum]
          Length = 351

 Score =  401 bits (1031), Expect = e-110,   Method: Composition-based stats.
 Identities = 257/336 (76%), Positives = 304/336 (90%), Gaps = 1/336 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 1   MDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 60  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSG VD++V+DSVAALTPRAEIEG+MG+++PG+QARLMSQALRKLT+S
Sbjct: 120 GEQALEITDTLVRSGRVDVLVVDSVAALTPRAEIEGEMGDTVPGLQARLMSQALRKLTAS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ
Sbjct: 180 ISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVIGNQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 240 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           REN+K FLR+N ++A  IE  LRQNAGL+AD  LQ 
Sbjct: 300 RENAKTFLRDNPDLAREIELSLRQNAGLIADRFLQN 335


>gi|162148079|ref|YP_001602540.1| protein recA (recombinase A) [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161786656|emb|CAP56239.1| Protein recA (Recombinase A) [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 381

 Score =  401 bits (1031), Expect = e-110,   Method: Composition-based stats.
 Identities = 245/346 (70%), Positives = 298/346 (86%), Gaps = 2/346 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKALE ALSQI+R +GKG++M+LG + +  E ++V+S+GSLGLDIALGIGG P+GRI
Sbjct: 38  IDKSKALEGALSQIERAFGKGSVMRLGQRAN--EAVDVISTGSLGLDIALGIGGLPRGRI 95

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH IA++QK GG CAF+DAEHALD  YARKLGVD+ NLLISQPD 
Sbjct: 96  VEIYGPESSGKTTLALHAIAEAQKKGGVCAFIDAEHALDPGYARKLGVDVDNLLISQPDA 155

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT +
Sbjct: 156 GEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGT 215

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +SRS  +++F+NQ+R+KIGVMFGSPETTTGGNALKFY+SVR+DIRR+G IKDKD + GNQ
Sbjct: 216 VSRSNTMMIFLNQIRLKIGVMFGSPETTTGGNALKFYASVRMDIRRIGQIKDKDEVVGNQ 275

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PF+QVEFDI+YGEGIS  GELIDLGVKA IV+KSGAWFS+  QR+GQG
Sbjct: 276 TRVKVVKNKMAPPFRQVEFDIVYGEGISKMGELIDLGVKAGIVEKSGAWFSYDSQRIGQG 335

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           RENSK +LRE+ E+A +IE  +R+ AG+VA+++L  P      + +
Sbjct: 336 RENSKQYLREHPEMAADIERRVREQAGVVAEAMLVSPGEQDLAEIE 381


>gi|132237|sp|P27865|RECA_RHIME RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|581521|emb|CAA42580.1| RecA protein [Sinorhizobium meliloti]
          Length = 348

 Score =  401 bits (1031), Expect = e-110,   Method: Composition-based stats.
 Identities = 268/348 (77%), Positives = 309/348 (88%), Gaps = 1/348 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI
Sbjct: 1   MDKSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 60  IEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S
Sbjct: 120 GEQALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ
Sbjct: 180 ISKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GELIDLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 240 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELIDLGVKAGIVEKSGAWFSYNSQRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           REN+K+FLREN E+   IE+ LRQNAGL+AD  L+     +  D   D
Sbjct: 300 RENAKLFLRENPELLREIETALRQNAGLIADRFLENGGPESDGDEAAD 347


>gi|182679357|ref|YP_001833503.1| recA protein [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182635240|gb|ACB96014.1| recA protein [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 343

 Score =  401 bits (1030), Expect = e-110,   Method: Composition-based stats.
 Identities = 251/343 (73%), Positives = 303/343 (88%), Gaps = 1/343 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KAL+AALSQI+R +GKG+IM+LG      E IE +S+GSLGLDIALG+GG P+GR+
Sbjct: 1   MDKTKALDAALSQIERAFGKGSIMRLGKSQKAIE-IETISTGSLGLDIALGVGGLPRGRV 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTL LH IA++QK GG CAF+DAEHALD +YARKLGV+L +LLISQPDT
Sbjct: 60  IEIYGPESSGKTTLTLHVIAEAQKKGGVCAFIDAEHALDPVYARKLGVNLDDLLISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG++ PG+QARLMSQALRKLT+S
Sbjct: 120 GEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDNQPGLQARLMSQALRKLTAS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ISRS+ +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+GSIKD++ ITGNQ
Sbjct: 180 ISRSQTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGSIKDREDITGNQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEG+S  GEL+DLGVKA +V+KSGAWFS+  QRLGQG
Sbjct: 240 TRVKVVKNKVAPPFKQVEFDIMYGEGVSKVGELVDLGVKAGVVEKSGAWFSYDSQRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           REN+K FL+ N E+A+ IE  +R+N+GL+AD +L +      D
Sbjct: 300 RENAKTFLKNNPEVADKIEMTIRENSGLIADRILDQAEPEEDD 342


>gi|323137974|ref|ZP_08073048.1| recA protein [Methylocystis sp. ATCC 49242]
 gi|322396693|gb|EFX99220.1| recA protein [Methylocystis sp. ATCC 49242]
          Length = 356

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 257/356 (72%), Positives = 304/356 (85%), Gaps = 9/356 (2%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + VDK+KAL+AALSQI+R +GKG+IM+LG      E IE +S+GSLGLDIALG+GG P
Sbjct: 10  EGSSVDKTKALDAALSQIERAFGKGSIMRLGKNQKAVE-IETISTGSLGLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GR+VEIYGPESSGKTTL LH IA++QK GG CAFVDAEHALD +YARKLGV+L+ LLIS
Sbjct: 69  RGRVVEIYGPESSGKTTLTLHVIAEAQKMGGVCAFVDAEHALDPVYARKLGVNLEELLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+  PG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDVQPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SI+RS  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR GSIKD+D  
Sbjct: 189 LTASIARSNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRTGSIKDRDEA 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYGEG+S  GELIDLGVKA +V+KSGAWFS+  QR
Sbjct: 249 IGNQTRVKVVKNKVAPPFKQVEFDIMYGEGVSKVGELIDLGVKAGVVEKSGAWFSYDSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           LGQGREN+K FLR+N E A  IE  +R+NAGL+A+ +L        D AD D+ ++
Sbjct: 309 LGQGRENAKNFLRQNPEAAARIEQAIRENAGLIAERIL--------DVADGDEAED 356


>gi|121602844|ref|YP_989026.1| recombinase A [Bartonella bacilliformis KC583]
 gi|166199600|sp|A1USS3|RECA_BARBK RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|120615021|gb|ABM45622.1| protein RecA [Bartonella bacilliformis KC583]
          Length = 347

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 257/347 (74%), Positives = 305/347 (87%), Gaps = 1/347 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK KAL+AALSQI+R +GKG+IM+LG +  + E IE +S+GSL LDIALG+GG PKGRI
Sbjct: 1   MDKKKALDAALSQIERSFGKGSIMRLGQKEGVVE-IETISTGSLSLDIALGVGGLPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALH IA++QK GG CAFVDAEHALD IYARKLGVDL+NL +SQPDT
Sbjct: 60  IEIYGPESSGKTTLALHAIAEAQKNGGVCAFVDAEHALDPIYARKLGVDLENLFVSQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEIT+ LVRSGAVD++V+DSVAALTPRAEI+G+M +SLPG+QARLMS+ALRKLT+S
Sbjct: 120 GEQALEITETLVRSGAVDVLVVDSVAALTPRAEIDGEMSDSLPGLQARLMSKALRKLTAS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIKDK+ + GNQ
Sbjct: 180 IFRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKDKELVVGNQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDI+YGEGIS  GELIDLGVK  IV+KSGAWFS+  QRLGQG
Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIIYGEGISKLGELIDLGVKVGIVEKSGAWFSYNSQRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           REN+K FLRE+ EIA  IE+ LRQNAGL+A  LL+    +  ++ ++
Sbjct: 300 RENAKQFLREHAEIAAEIETALRQNAGLLAIELLENVGADNIENDEE 346


>gi|329114759|ref|ZP_08243516.1| Protein RecA [Acetobacter pomorum DM001]
 gi|326695890|gb|EGE47574.1| Protein RecA [Acetobacter pomorum DM001]
          Length = 367

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 241/351 (68%), Positives = 301/351 (85%), Gaps = 2/351 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
            +RK M  +DK+KALE AL QI+R +GKG++M+LG +  +   +  + +GSLGLDIALGI
Sbjct: 19  AHRKGMVKMDKAKALEGALGQIERAFGKGSVMRLGQRPKVEADV--IPTGSLGLDIALGI 76

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GR+VEIYGPESSGKTTLALH IA++QK GGTCAF+DAEHALD  YA+KLGVD+ N
Sbjct: 77  GGLPRGRVVEIYGPESSGKTTLALHAIAEAQKRGGTCAFIDAEHALDPGYAKKLGVDVDN 136

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLISQPD GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQ
Sbjct: 137 LLISQPDAGEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQ 196

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT +++RS  +++F+NQ+R+KIGVMFG+PETTTGGNALKFYSSVR+DIRR+GSIKD
Sbjct: 197 ALRKLTGTVARSNTLMIFLNQIRLKIGVMFGNPETTTGGNALKFYSSVRMDIRRIGSIKD 256

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
           KD +TGNQTRVKVVKNKMA PF+QVEFDIMYGEGIS  GELIDLGVKA +V+KSG+WFS+
Sbjct: 257 KDEVTGNQTRVKVVKNKMAPPFRQVEFDIMYGEGISKVGELIDLGVKAGVVEKSGSWFSY 316

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
             QR+GQGREN+K FLR++ E+A +IE  +R++AG+VA++++  P  +  D
Sbjct: 317 DSQRIGQGRENAKQFLRDHPEMAADIERRVREHAGVVAEAMMVAPEHHEGD 367


>gi|1172888|sp|P24543|RECA_RHIET RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|683661|emb|CAA44346.1| RecA [Rhizobium phaseoli]
          Length = 361

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 263/340 (77%), Positives = 305/340 (89%), Gaps = 1/340 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P
Sbjct: 10  EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVIE-IETISTGSLGLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRI+EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 69  KGRIIEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SIS+S  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ +
Sbjct: 189 LTASISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QR
Sbjct: 249 IGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           LGQG EN+K FLR+N ++A  IE  LR+NAGL+AD  LQ 
Sbjct: 309 LGQGGENAKTFLRDNPDLAREIELALRENAGLIADRFLQN 348


>gi|319405870|emb|CBI79502.1| RecA protein [Bartonella sp. AR 15-3]
          Length = 347

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 258/346 (74%), Positives = 309/346 (89%), Gaps = 1/346 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KALE+ALSQI+R +GKG+IM+LG +  + E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 1   MDKTKALESALSQIERSFGKGSIMRLGQKEQVVE-IETVSTGSLSLDIALGIGGLPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALH+IA++QK GG CAF+DAEHALD IYARKLGVDL+NL ISQPDT
Sbjct: 60  IEIYGPESSGKTTLALHSIAEAQKNGGICAFIDAEHALDPIYARKLGVDLENLFISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEIT+ LVRSGAVD++V+DSVAALTPRAEI+G+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 120 GEQALEITETLVRSGAVDVLVVDSVAALTPRAEIDGEMGDSLPGLQARLMSQALRKLTAS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D+I G+Q
Sbjct: 180 IFRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDTIIGSQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDI+YGEGIS  GEL+DLGVK  +V+KSG+WFS+  QRLGQG
Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIIYGEGISKLGELVDLGVKVGLVEKSGSWFSYNSQRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           REN+K FLRE+ EIA  IE+ LRQNAGL+A  LL+   + + +D +
Sbjct: 300 RENAKQFLREHTEIASEIETALRQNAGLIAIELLENSGLESTEDDE 345


>gi|209964227|ref|YP_002297142.1| RecA protein [Rhodospirillum centenum SW]
 gi|226723637|sp|B6IS93|RECA_RHOCS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|209957693|gb|ACI98329.1| RecA protein [Rhodospirillum centenum SW]
          Length = 358

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 242/342 (70%), Positives = 298/342 (87%), Gaps = 1/342 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK KAL+AAL QI+R +GKG+IM+LG++ ++ E  E +S+GSLGLDIALGIGG P+GRI
Sbjct: 13  MDKQKALDAALGQIERAFGKGSIMKLGAREAMAE-TEAISTGSLGLDIALGIGGLPRGRI 71

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH IA++QK GGTCAFVDAEHALD  YARKLGVD+  LLISQPD 
Sbjct: 72  VEIYGPESSGKTTLALHAIAEAQKAGGTCAFVDAEHALDPAYARKLGVDVDELLISQPDA 131

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EG+MG+S  G+ ARLMSQALRKLT S
Sbjct: 132 GEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDSHVGLHARLMSQALRKLTGS 191

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S+C+++FINQ+R+KIGVMFG+PETTTGGNALKFY+S+RLDIRR+G+IKD+D++ GNQ
Sbjct: 192 ISKSRCLVIFINQIRLKIGVMFGNPETTTGGNALKFYASIRLDIRRIGAIKDRDNVVGNQ 251

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PF+ VEFDIMYGEG+S  GEL+DLG++A +V+KSGAWFS+ GQR+GQG
Sbjct: 252 TRVKVVKNKMAPPFRVVEFDIMYGEGVSKVGELLDLGIQAGVVEKSGAWFSYDGQRIGQG 311

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           REN+K FLR N  +AE IE+ +R NAGLVA +++  P  +  
Sbjct: 312 RENAKTFLRNNAAVAEAIEAKVRANAGLVASAMMGAPESDGD 353


>gi|328543179|ref|YP_004303288.1| recombinase A [Polymorphum gilvum SL003B-26A1]
 gi|326412925|gb|ADZ69988.1| recombinase A [Polymorphum gilvum SL003B-26A1]
          Length = 344

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 253/349 (72%), Positives = 309/349 (88%), Gaps = 5/349 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KAL+AALSQI+R +GKG+IM+LG   ++   ++ VS+GSLGLDIALG+GG P+GRI
Sbjct: 1   MDKTKALDAALSQIERAFGKGSIMRLGQGQAV--EVQTVSTGSLGLDIALGVGGLPRGRI 58

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHTIA++QK GG CAF+DAEHALD +YARKLGV++ +LLISQPD 
Sbjct: 59  VEIYGPESSGKTTLALHTIAEAQKLGGICAFIDAEHALDPVYARKLGVNIDDLLISQPDA 118

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA++++VIDSVAALTP+AE+EG+MG+SLPGMQARLMSQALRKLT+S
Sbjct: 119 GEQALEIADTLVRSGAIEVLVIDSVAALTPKAELEGEMGDSLPGMQARLMSQALRKLTAS 178

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIKD+D + GNQ
Sbjct: 179 ISKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKDRDEVIGNQ 238

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PF+QVEFD++YGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 239 TRVKVVKNKLAPPFRQVEFDVIYGEGVSKMGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 298

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           REN+K FLREN EIA  IE  +RQNAGL++D+++    +   D+A  DD
Sbjct: 299 RENAKQFLRENPEIAAEIELAIRQNAGLLSDAIIDPDGV---DEAGLDD 344


>gi|114797171|ref|YP_761421.1| recA protein [Hyphomonas neptunium ATCC 15444]
 gi|114737345|gb|ABI75470.1| recA protein [Hyphomonas neptunium ATCC 15444]
          Length = 356

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 245/355 (69%), Positives = 304/355 (85%), Gaps = 2/355 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           + + VDK KALE AL  I+R +GKG++M+LG + ++   IE VS+GSLGLDIALGIGG P
Sbjct: 3   KESGVDKQKALETALGNIERSFGKGSVMRLGDKKTL--DIEAVSTGSLGLDIALGIGGLP 60

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRI+EI+GPESSGKTTL+LH +A++QK GG CAF+DAEHALD +YA KLGVDL +LLIS
Sbjct: 61  KGRIIEIFGPESSGKTTLSLHCVAEAQKNGGVCAFIDAEHALDPVYASKLGVDLDDLLIS 120

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEI D LVRSGAVD++VIDSVAALTPRAEIEG+MG+ LPG+QARLMSQALRK
Sbjct: 121 QPDTGEQALEIADTLVRSGAVDLVVIDSVAALTPRAEIEGEMGDQLPGLQARLMSQALRK 180

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SIS+SKC+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G IKD++ +
Sbjct: 181 LTGSISKSKCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGQIKDREEV 240

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PF+QVEFDI+YGEGIS  GEL+DLGVKA++V+KSG+WFS+ G+R
Sbjct: 241 IGNQTRVKVVKNKVAPPFRQVEFDIIYGEGISKTGELVDLGVKANVVEKSGSWFSYNGER 300

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           +GQGRE ++ FL++N  +A  IE  +R+NAGL+A+ LL    +  + D D +  +
Sbjct: 301 IGQGREKARQFLKDNPAVANEIEDAVRRNAGLLAEELLSAGMVAGEGDDDAEAAE 355


>gi|49475766|ref|YP_033807.1| recombinase A [Bartonella henselae str. Houston-1]
 gi|59798263|sp|Q6G2Z3|RECA_BARHE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|49238573|emb|CAF27814.1| recA protein [Bartonella henselae str. Houston-1]
          Length = 347

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 256/346 (73%), Positives = 301/346 (86%), Gaps = 1/346 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK KAL+AALSQI+R +GKG+IM+LG +  + E IE + +GSL LDIALG+GG PKGRI
Sbjct: 1   MDKIKALDAALSQIERSFGKGSIMRLGQKEQVVE-IETIPTGSLSLDIALGVGGLPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH IA++QK GG CAF+DAEHALD IYARKLGVDL+NL ISQPDT
Sbjct: 60  VEIYGPESSGKTTLALHAIAEAQKNGGVCAFIDAEHALDPIYARKLGVDLENLFISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEIT+ LVRSGAVD++V+DSVAALTPRAEI+G+MG++LPG+QARLMS+ALRKLT+S
Sbjct: 120 GEQALEITETLVRSGAVDVLVVDSVAALTPRAEIDGEMGDALPGLQARLMSKALRKLTAS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIKD+D I GNQ
Sbjct: 180 IFRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKDRDMIVGNQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDI+YGEGIS  GELIDLGVK   V+KSG+WFS+  QRLGQG
Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIIYGEGISKLGELIDLGVKVGTVEKSGSWFSYNSQRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           REN+K FLRE+ EIA  IE+ LRQNAGL+A  LL+       +  +
Sbjct: 300 RENAKQFLREHPEIATEIETALRQNAGLIAIELLENAGSENTESDE 345


>gi|60392988|sp|P62209|RECA_AZOLI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|37700516|gb|AAR00257.1| RecA [Azospirillum lipoferum]
          Length = 369

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 246/338 (72%), Positives = 301/338 (89%), Gaps = 1/338 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DK KAL+AALSQI+R +GKG+IM+LG++ ++ E  EV+S+GSLGLDIALGIGG P
Sbjct: 10  EKDSMDKQKALDAALSQIERAFGKGSIMKLGARENLVE-TEVISTGSLGLDIALGIGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALH IAQ+QK GGTCAFVDAEHALD  YARKLGV++  LLIS
Sbjct: 69  KGRIVEIYGPESSGKTTLALHAIAQAQKAGGTCAFVDAEHALDPSYARKLGVNIDELLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EG+MG+++ G+ ARLMSQALRK
Sbjct: 129 QPDAGEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDAMSGLHARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SIS+S C+++FINQ+R+KIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIKD+D++
Sbjct: 189 LTGSISKSNCLVIFINQIRLKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKDRDTV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNKMA PF+ VEFDIMYGEG+S  GEL+DLG++A +VDKSGAWFS+ G R
Sbjct: 249 VGNQTRVKVVKNKMAPPFRVVEFDIMYGEGVSKVGELLDLGIQAGVVDKSGAWFSYDGTR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343
           +GQGREN+K +LR N E+A+ IE+ +R NAGLVAD+++
Sbjct: 309 IGQGRENAKTYLRNNPEMADAIEAKIRGNAGLVADAMM 346


>gi|83594151|ref|YP_427903.1| recombinase A [Rhodospirillum rubrum ATCC 11170]
 gi|123766962|sp|Q2RQH9|RECA_RHORT RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|83577065|gb|ABC23616.1| RecA protein [Rhodospirillum rubrum ATCC 11170]
          Length = 366

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 242/347 (69%), Positives = 298/347 (85%), Gaps = 1/347 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           + + +DK KALEAA+ QI+R +GKG+IM+LG +GS+   IE +S+GSLGLDIALGIGG P
Sbjct: 10  DKDTMDKQKALEAAVGQIERAFGKGSIMKLGQRGSVV-DIESISTGSLGLDIALGIGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRIVEIYGPESSGKTTLALH +A++QK GG CAFVDAEHA D +YARKLGV L +LL+S
Sbjct: 69  RGRIVEIYGPESSGKTTLALHVVAEAQKKGGQCAFVDAEHAFDPLYARKLGVSLDDLLVS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEI D LVRSGA+D++VIDSVAAL P+AE+EGDMG+S  G+QARLMSQALRK
Sbjct: 129 QPDTGEQALEIADTLVRSGAIDVLVIDSVAALVPKAELEGDMGDSHVGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT ++SRS  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KDK+ +
Sbjct: 189 LTGTVSRSNTLIIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDKEEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFK VEFDIMYGEGIS  GE++DLGVKA+I++KSGAWFS+   R
Sbjct: 249 VGNQTRVKVVKNKVAPPFKVVEFDIMYGEGISKLGEMLDLGVKANIIEKSGAWFSYNSTR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           +GQGREN+K FLR+N  +AE IE+ +R NAGL+A+ ++  P     D
Sbjct: 309 IGQGRENAKQFLRDNPAMAEEIENAVRANAGLIAEEMIGGPGGEDDD 355


>gi|49474376|ref|YP_032418.1| recombinase A [Bartonella quintana str. Toulouse]
 gi|59798256|sp|Q6FZF0|RECA_BARQU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|49239880|emb|CAF26278.1| recA protein [Bartonella quintana str. Toulouse]
          Length = 347

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 258/346 (74%), Positives = 303/346 (87%), Gaps = 1/346 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KAL+AALSQI+R +GKG+IM+LG +  + E IE + +GSL LDIALG+GG PKGRI
Sbjct: 1   MDKTKALDAALSQIERSFGKGSIMRLGQKEQVVE-IETIPTGSLSLDIALGVGGLPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH IA++QK GG CAF+DAEHALD IYARKLGVDL+NL ISQPDT
Sbjct: 60  VEIYGPESSGKTTLALHAIAEAQKNGGVCAFIDAEHALDPIYARKLGVDLENLFISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEIT+ LVRSGAVD++V+DSVAALTPRAEI+G+MG++LPG+QARLMS+ALRKLT+S
Sbjct: 120 GEQALEITETLVRSGAVDVLVVDSVAALTPRAEIDGEMGDALPGLQARLMSKALRKLTAS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRRVGSIKD+D I GNQ
Sbjct: 180 IFRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGSIKDRDMIVGNQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDI+YGEGIS  GELIDLGVK  IV+KSG+WFS+  QRLGQG
Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIIYGEGISKLGELIDLGVKVGIVEKSGSWFSYNSQRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           REN+K FLRE+ EIA  IE+ LRQNAGL+A  LL+       +  +
Sbjct: 300 RENAKQFLREHAEIATEIETALRQNAGLIAIELLENAGSENTESNE 345


>gi|298292139|ref|YP_003694078.1| recA protein [Starkeya novella DSM 506]
 gi|296928650|gb|ADH89459.1| recA protein [Starkeya novella DSM 506]
          Length = 360

 Score =  399 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 259/352 (73%), Positives = 309/352 (87%), Gaps = 2/352 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DK+KAL+AALSQI+R +GKG+IM+LG    I E IE VS+GSLGLDIALGIGG P
Sbjct: 10  EGSSMDKAKALDAALSQIERHFGKGSIMRLGKNDKIME-IETVSTGSLGLDIALGIGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRIVEI+GPESSGKTTLALHTIA+SQK GG CAF+DAEHALD IYARKLGVDL NLLIS
Sbjct: 69  RGRIVEIFGPESSGKTTLALHTIAESQKKGGVCAFIDAEHALDPIYARKLGVDLDNLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI D LVRSGAVD++V+DSVAALTPRAE++G+MG++ PGMQARLMSQALRK
Sbjct: 129 QPDAGEQALEIADTLVRSGAVDVLVVDSVAALTPRAELDGEMGDNQPGMQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SI+RS+ +++FINQ+RMKIGVM+GSPETTTGGNALKFYSSVRLDIRR+G+IK++D +
Sbjct: 189 LTASINRSQTMVIFINQIRMKIGVMYGSPETTTGGNALKFYSSVRLDIRRIGAIKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYGEG+S  GELIDLG+KA +V+KSGAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGELIDLGIKAGVVEKSGAWFSYDSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           LGQGREN+K FLR+N ++A  IE+ +RQNAGL+A+ +L   A    DD D +
Sbjct: 309 LGQGRENAKNFLRQNPDVAGRIEATIRQNAGLIAEQILAGEA-GEDDDGDAE 359


>gi|319407396|emb|CBI81047.1| RecA protein [Bartonella sp. 1-1C]
          Length = 347

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 257/346 (74%), Positives = 307/346 (88%), Gaps = 1/346 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KALEAALSQI+R +GKG+IM+LG +  + E IE VS+GSL LDIALG+GG PKGRI
Sbjct: 1   MDKTKALEAALSQIERSFGKGSIMRLGQKEQVVE-IETVSTGSLSLDIALGVGGLPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALH+IA++QK GG CAFVDAEHALD IYARKLGVDL+NL ISQPDT
Sbjct: 60  IEIYGPESSGKTTLALHSIAEAQKNGGVCAFVDAEHALDPIYARKLGVDLENLFISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEIT+ LVRSGAVD++V+DSVAALTPRAEI+G+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 120 GEQALEITETLVRSGAVDVLVVDSVAALTPRAEIDGEMGDSLPGLQARLMSQALRKLTAS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D+I G+Q
Sbjct: 180 IFRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDTIIGSQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVK+VKNK+A PFKQVEFDI+YGEGIS  GELIDLGVK  +V+KSG+WFS+  QRLGQG
Sbjct: 240 TRVKIVKNKLAPPFKQVEFDIIYGEGISKLGELIDLGVKVGLVEKSGSWFSYNSQRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           REN+K FL E+ EIA  IE+ LRQNAGL+A  LL+   + + +  +
Sbjct: 300 RENAKQFLCEHTEIAAEIETALRQNAGLIAIELLENSGVESTEGEE 345


>gi|307945635|ref|ZP_07660971.1| protein RecA [Roseibium sp. TrichSKD4]
 gi|307771508|gb|EFO30733.1| protein RecA [Roseibium sp. TrichSKD4]
          Length = 355

 Score =  398 bits (1022), Expect = e-109,   Method: Composition-based stats.
 Identities = 257/349 (73%), Positives = 311/349 (89%), Gaps = 3/349 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DK+KAL+AALSQI+R +GKG+IM++G   ++   ++ VS+GSLGLDIALGIGG P
Sbjct: 10  ESSQMDKTKALDAALSQIERAFGKGSIMRMGQGQAV--EVQSVSTGSLGLDIALGIGGLP 67

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHT+A++QKTGG CAFVDAEHALD IYARKLGV++ +LLIS
Sbjct: 68  KGRIVEIYGPESSGKTTLALHTVAEAQKTGGICAFVDAEHALDPIYARKLGVNIDDLLIS 127

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI D LVRSGA+D++VIDSVAALTP+AE+EG+MG+SLPGMQARLMSQALRK
Sbjct: 128 QPDAGEQALEIADTLVRSGAIDVLVIDSVAALTPKAELEGEMGDSLPGMQARLMSQALRK 187

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SIS+S C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D +
Sbjct: 188 LTASISKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDEV 247

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PF+QVEFDI+YGEG+S  GELIDLGVK  IV+KSGAWFS+  QR
Sbjct: 248 VGNQTRVKVVKNKLAPPFRQVEFDIIYGEGVSKMGELIDLGVKGGIVEKSGAWFSYNSQR 307

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           LGQGREN+K FLR+N EIAE IE  +RQNAGL+A++++ +P     DD+
Sbjct: 308 LGQGRENAKQFLRDNPEIAEEIELAVRQNAGLIAEAII-DPTGGEDDDS 355


>gi|319404396|emb|CBI77999.1| RecA protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 347

 Score =  398 bits (1022), Expect = e-109,   Method: Composition-based stats.
 Identities = 257/346 (74%), Positives = 306/346 (88%), Gaps = 1/346 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KALEAALSQI+R +GKG+IM+LG +  + E IE VS+GSL LDIALG+GG PKGRI
Sbjct: 1   MDKTKALEAALSQIERSFGKGSIMRLGQKEQVVE-IETVSTGSLSLDIALGVGGLPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALH+IA++QK GG CAFVDAEHALD IYARKLGVDL NL ISQPDT
Sbjct: 60  IEIYGPESSGKTTLALHSIAEAQKNGGVCAFVDAEHALDPIYARKLGVDLANLFISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEIT+ LVRSGAVD++V+DSVAALTPRAEI+G+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 120 GEQALEITETLVRSGAVDVLVVDSVAALTPRAEIDGEMGDSLPGLQARLMSQALRKLTAS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D+I G+Q
Sbjct: 180 IFRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDTIIGSQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVK+VKNK+A PFKQVEFDI+YGEGIS  GELIDLGVK  +V+KSG+WFS+  QRLGQG
Sbjct: 240 TRVKIVKNKLAPPFKQVEFDIIYGEGISKLGELIDLGVKVGLVEKSGSWFSYNSQRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           REN+K FL E+ EIA  IE+ LRQNAGL+A  LL+   + + +  +
Sbjct: 300 RENAKQFLCEHTEIAAEIETALRQNAGLIAIELLENSGVESTEGEE 345


>gi|304391434|ref|ZP_07373376.1| protein RecA [Ahrensia sp. R2A130]
 gi|303295663|gb|EFL90021.1| protein RecA [Ahrensia sp. R2A130]
          Length = 368

 Score =  398 bits (1021), Expect = e-109,   Method: Composition-based stats.
 Identities = 259/352 (73%), Positives = 304/352 (86%), Gaps = 1/352 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   +DKSKALEAAL QI+R +GKG+IM+LG+     E IE +S+G +GLDIALG+GG P
Sbjct: 10  EDKKLDKSKALEAALGQIERAFGKGSIMRLGANEQAVE-IETISTGCIGLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTT+ALHT+A++QK GG CAFVDAEHALD +YA+KLGV+L+NLLIS
Sbjct: 69  KGRIVEIYGPESSGKTTMALHTVAEAQKEGGICAFVDAEHALDPVYAKKLGVNLENLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEI D LVRSGA DI+VIDSVAALTPRAEIEG+MG SLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEIADTLVRSGACDILVIDSVAALTPRAEIEGEMGASLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SIS+S  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D I
Sbjct: 189 LTASISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDEI 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTR+KVVKNK+A PFKQVEFDIMYGEG+S  GELIDLGV A IV+KSG+WFS+  QR
Sbjct: 249 VGNQTRIKVVKNKLAPPFKQVEFDIMYGEGVSKMGELIDLGVTAGIVEKSGSWFSYDSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           LGQGREN+K FLR+N E+AE IE  +R NAGL+ + LL EP    +D  D +
Sbjct: 309 LGQGRENAKQFLRDNPEVAETIEKAIRTNAGLIGEKLLDEPTGKDEDGTDPE 360


>gi|209542693|ref|YP_002274922.1| recA protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530370|gb|ACI50307.1| recA protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 350

 Score =  398 bits (1021), Expect = e-109,   Method: Composition-based stats.
 Identities = 245/346 (70%), Positives = 298/346 (86%), Gaps = 2/346 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKALE ALSQI+R +GKG++M+LG + +  E ++V+S+GSLGLDIALGIGG P+GRI
Sbjct: 7   IDKSKALEGALSQIERAFGKGSVMRLGQRAN--EAVDVISTGSLGLDIALGIGGLPRGRI 64

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH IA++QK GG CAF+DAEHALD  YARKLGVD+ NLLISQPD 
Sbjct: 65  VEIYGPESSGKTTLALHAIAEAQKKGGVCAFIDAEHALDPGYARKLGVDVDNLLISQPDA 124

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT +
Sbjct: 125 GEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGT 184

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +SRS  +++F+NQ+R+KIGVMFGSPETTTGGNALKFY+SVR+DIRR+G IKDKD + GNQ
Sbjct: 185 VSRSNTMMIFLNQIRLKIGVMFGSPETTTGGNALKFYASVRMDIRRIGQIKDKDEVVGNQ 244

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PF+QVEFDI+YGEGIS  GELIDLGVKA IV+KSGAWFS+  QR+GQG
Sbjct: 245 TRVKVVKNKMAPPFRQVEFDIVYGEGISKMGELIDLGVKAGIVEKSGAWFSYDSQRIGQG 304

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           RENSK +LRE+ E+A +IE  +R+ AG+VA+++L  P      + +
Sbjct: 305 RENSKQYLREHPEMAADIERRVREQAGVVAEAMLVSPGEQDLAEIE 350


>gi|209884571|ref|YP_002288428.1| protein RecA [Oligotropha carboxidovorans OM5]
 gi|209872767|gb|ACI92563.1| protein RecA [Oligotropha carboxidovorans OM5]
          Length = 360

 Score =  398 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 245/352 (69%), Positives = 302/352 (85%), Gaps = 1/352 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   +DK+KAL AALSQI+R +GKG++M+LG        IEV+SSGSLGLDIALG+GG P
Sbjct: 10  EGTSMDKTKALTAALSQIERQFGKGSVMRLGKNDRSM-DIEVISSGSLGLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALH +A++QK GGTCAF+DAEHALD +YARKLGV++ +LLIS
Sbjct: 69  KGRIVEIYGPESSGKTTLALHAVAEAQKKGGTCAFIDAEHALDPVYARKLGVNVDDLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI D LVRSGAVD++++DSVAAL PRAE+EG+MG+SLPG+QARLMSQALRK
Sbjct: 129 QPDHGEQALEIADTLVRSGAVDVLIVDSVAALVPRAELEGEMGDSLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SI++S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR G+IK++D +
Sbjct: 189 LTASINKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRTGAIKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN TRVKVVKNK+A PFKQVEFDIMYGEG+S  GE++DLGVKA IV+KSGAWFS+  QR
Sbjct: 249 IGNSTRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSYDSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           LGQGREN+K FLR+N ++   IE+ +RQN+GL+A+ +L  P  +   +  +D
Sbjct: 309 LGQGRENAKSFLRDNPDMVAKIEAAIRQNSGLIAEQILAGPKESEDGEEAED 360


>gi|163868622|ref|YP_001609831.1| recombinase A [Bartonella tribocorum CIP 105476]
 gi|189039590|sp|A9IVY9|RECA_BART1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|161018278|emb|CAK01836.1| RecA protein [Bartonella tribocorum CIP 105476]
          Length = 347

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 259/346 (74%), Positives = 303/346 (87%), Gaps = 1/346 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KAL+AALSQI+R +GKG+IM+LG +  + E IE V +GSL LDIALGIGG PKGRI
Sbjct: 1   MDKTKALDAALSQIERSFGKGSIMRLGQKEQVVE-IETVPTGSLSLDIALGIGGLPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH IA++QK GG CAF+DAEHALD IYARKLGVDL+NL ISQPDT
Sbjct: 60  VEIYGPESSGKTTLALHAIAEAQKGGGICAFIDAEHALDPIYARKLGVDLENLFISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEIT+ LVRSGAVD++V+DSVAALTPRAEI+G+MG++LPG+QARLMS+ALRKLT+S
Sbjct: 120 GEQALEITETLVRSGAVDVLVVDSVAALTPRAEIDGEMGDALPGLQARLMSKALRKLTAS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIKD+D I GNQ
Sbjct: 180 IFRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKDRDMIVGNQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDI+YGEGIS  GELIDLGVK  IV+KSG+WFS+  QRLGQG
Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIIYGEGISKLGELIDLGVKVGIVEKSGSWFSYNSQRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           REN+K FLRE+ EIA  IE+ LRQNAGL+A  LL+       +  +
Sbjct: 300 RENAKQFLREHAEIAAEIETALRQNAGLIAIELLENAGSENTEGDE 345


>gi|289642433|ref|ZP_06474579.1| recA protein [Frankia symbiont of Datisca glomerata]
 gi|289507778|gb|EFD28731.1| recA protein [Frankia symbiont of Datisca glomerata]
          Length = 345

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 213/347 (61%), Positives = 272/347 (78%), Gaps = 3/347 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M  +D+ KALE AL+QI + +GKG++M+LG        ++V+ +GS+ LD+ALGIGG P+
Sbjct: 1   MAGLDREKALENALAQIDKQFGKGSVMRLGDDTR--PPVQVIPTGSIALDVALGIGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA KLGV+   LL+SQ
Sbjct: 59  GRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAAKLGVNTDALLVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL
Sbjct: 119 PDTGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T ++S S    +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     
Sbjct: 179 TGALSHSGTTAIFINQLREKVGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNKMA PF+  EFDI+YG GIS  G LID+GV+  I+ KSGAW+++ G +L
Sbjct: 239 GNRTRVKVVKNKMAPPFRTAEFDIVYGGGISREGSLIDMGVEQGIIRKSGAWYTYDGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           GQG+EN++ F+R+N +IA+ IE  +++  GLV  +L  +PA     D
Sbjct: 299 GQGKENARSFMRDNPDIADEIEKRIKEKLGLVP-TLDVDPASPPPAD 344


>gi|144900462|emb|CAM77326.1| RecA bacterial DNA recombination protein [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 358

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 243/351 (69%), Positives = 300/351 (85%), Gaps = 2/351 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           + + +D+ KALEAA+SQI+R +GKG+IM++G + ++    EVVS+GSLGLDIALGIGG P
Sbjct: 10  DKDTMDRQKALEAAVSQIERAFGKGSIMKMGQKETV--ETEVVSTGSLGLDIALGIGGLP 67

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+EIYGPESSGKTTLALH +A++QK GGTCAF+DAEHALD  YARKLGV+L +LLIS
Sbjct: 68  RGRIIEIYGPESSGKTTLALHVLAEAQKKGGTCAFIDAEHALDPSYARKLGVNLDDLLIS 127

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI D LVRSGAVD++V+DSVAAL PRAE+EG+MG+S  G+ ARLMSQALRK
Sbjct: 128 QPDAGEQALEICDTLVRSGAVDVLVVDSVAALVPRAELEGEMGDSHVGLHARLMSQALRK 187

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT S+S+SK I++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR++IRRVG+IKD+D +
Sbjct: 188 LTGSVSKSKTIVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMEIRRVGAIKDRDEV 247

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFK V+FDIMYGEGIS  GELIDLGVKA++V+KSGAWFS+   R
Sbjct: 248 VGNQTRVKVVKNKLAPPFKVVDFDIMYGEGISKTGELIDLGVKANVVEKSGAWFSYNSTR 307

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           +GQGREN+K FLR+N  +A  IE+ +R NAGLVA++L   P     + A+ 
Sbjct: 308 VGQGRENAKQFLRDNPAMAGEIEATIRANAGLVAEALAAGPGDLDGNAAED 358


>gi|158424479|ref|YP_001525771.1| recombinase A [Azorhizobium caulinodans ORS 571]
 gi|158331368|dbj|BAF88853.1| RecA protein [Azorhizobium caulinodans ORS 571]
          Length = 363

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 255/354 (72%), Positives = 307/354 (86%), Gaps = 1/354 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DK+KAL+AALSQI+R +GKG+IM+LG  G + E +E +SSGSLGLDIALGIGG P
Sbjct: 10  EGSSMDKTKALDAALSQIERHFGKGSIMRLGKSGKVME-VESISSGSLGLDIALGIGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GGTCAF+DAEHALD IYARKLGV+L +LLIS
Sbjct: 69  KGRIVEIYGPESSGKTTLALHTIAEAQKKGGTCAFIDAEHALDPIYARKLGVNLDDLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI D LVRSGA+D++V+DSVAALTPRAE++G+MG++ PGMQARLMSQALRK
Sbjct: 129 QPDAGEQALEIADTLVRSGAIDVLVVDSVAALTPRAELDGEMGDNQPGMQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SIS+S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G IK++D +
Sbjct: 189 LTASISKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGMIKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYGEG+S  GEL+DLGV+A +V+KSGAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGELLDLGVRAGVVEKSGAWFSYDSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           LGQGREN+K FLR+N E+A  IE+ +RQNAGL+AD +L     +   D D    
Sbjct: 309 LGQGRENAKTFLRQNPEVAGRIEATIRQNAGLIADQILTGSPEDEDGDGDAAAE 362


>gi|307329220|ref|ZP_07608385.1| recA protein [Streptomyces violaceusniger Tu 4113]
 gi|306885119|gb|EFN16140.1| recA protein [Streptomyces violaceusniger Tu 4113]
          Length = 379

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 211/331 (63%), Positives = 274/331 (82%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G + +  E IEV+ +GS  LD+ALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRMGDRPN--EPIEVIPTGSTALDVALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE+YGPESSGKTTL LH +A +Q+ GGT AFVDAEHALD  YA+KLGVD  +L++SQ
Sbjct: 59  GRVVEVYGPESSGKTTLTLHAVANAQRAGGTVAFVDAEHALDPDYAQKLGVDTDSLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V KSGAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKSGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FL++N ++A  IE  +++  G+
Sbjct: 299 GQGKENARNFLKDNPDLANEIERKIKEKLGI 329


>gi|240850807|ref|YP_002972207.1| recombinase A [Bartonella grahamii as4aup]
 gi|240267930|gb|ACS51518.1| recombinase A [Bartonella grahamii as4aup]
          Length = 347

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 261/346 (75%), Positives = 304/346 (87%), Gaps = 1/346 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KAL+AALSQI+R +GKG+IM+LG +  + E IE V +GSL LDIALGIGG PKGRI
Sbjct: 1   MDKTKALDAALSQIERSFGKGSIMRLGQKEQVVE-IETVPTGSLSLDIALGIGGLPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH IA++QK GG CAF+DAEHALD IYARKLGVDL+NL ISQPDT
Sbjct: 60  VEIYGPESSGKTTLALHAIAEAQKGGGICAFIDAEHALDPIYARKLGVDLENLFISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEIT+ LVRSGAVD++V+DSVAALTPRAEI+G+MG++LPG+QARLMS+ALRKLT++
Sbjct: 120 GEQALEITETLVRSGAVDVLVVDSVAALTPRAEIDGEMGDALPGLQARLMSKALRKLTAA 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I RS C++VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIKD+D+I GNQ
Sbjct: 180 IFRSNCMVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKDRDAIVGNQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDI+YGEGIS  GELIDLGVK  IV+KSGAWFS+  QRLGQG
Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIIYGEGISKVGELIDLGVKVGIVEKSGAWFSYNSQRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           REN+K FLRE+ EIA  IES LRQNAGL+A  LL+       +  +
Sbjct: 300 RENAKQFLREHAEIATEIESALRQNAGLIAIELLENAGSENIESDE 345


>gi|329939950|ref|ZP_08289232.1| recombinase A [Streptomyces griseoaurantiacus M045]
 gi|329300776|gb|EGG44672.1| recombinase A [Streptomyces griseoaurantiacus M045]
          Length = 376

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 213/344 (61%), Positives = 275/344 (79%), Gaps = 2/344 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           + M   D+ KAL+AAL+QI+R +GKGA+M++G + +  E IEV+ +GS  LD+ALG+GG 
Sbjct: 2   EPMAGTDREKALDAALAQIERQFGKGAVMRMGDRTN--EPIEVIPTGSTALDVALGVGGL 59

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GR+VEIYGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KLGVD+ NL++
Sbjct: 60  PRGRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLIL 119

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALR
Sbjct: 120 SQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 179

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           K+TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD   
Sbjct: 180 KITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTD 239

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
             GN+TR KVVKNK+A PFKQ EFDI+YG GIS  G LID+GV+   V K+GAW++++G 
Sbjct: 240 AVGNRTRCKVVKNKVAPPFKQAEFDILYGHGISREGGLIDMGVEHGFVRKAGAWYTYEGD 299

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348
           +LGQG+EN++ FL++N ++A  IE  +++  G+        PA 
Sbjct: 300 QLGQGKENARNFLKDNPDLANEIERKIKEKLGVGVRPAEPAPAE 343


>gi|730487|sp|P41054|RECA_STRAM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|511133|emb|CAA82979.1| RecA [Streptomyces ambofaciens]
          Length = 372

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 213/348 (61%), Positives = 276/348 (79%), Gaps = 2/348 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G +    E IEV+ +GS  LD+ALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRMGDRSK--EPIEVIPTGSTALDVALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++E+YGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 59  GRVIEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAQKLGVDIDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           GQG+EN++ FL++N ++A  IE  +++  G+           +  D A
Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKIKEKLGVGVRPEEPTATESGPDAA 346


>gi|294815485|ref|ZP_06774128.1| Protein recA [Streptomyces clavuligerus ATCC 27064]
 gi|294328084|gb|EFG09727.1| Protein recA [Streptomyces clavuligerus ATCC 27064]
          Length = 417

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 213/356 (59%), Positives = 280/356 (78%), Gaps = 4/356 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           + M   D+ KAL+AAL+QI+R +GKGA+M++G +    E IE++ +GS  LD+ALG+GG 
Sbjct: 42  EPMAGTDREKALDAALAQIERQFGKGAVMRMGDRTQ--EPIEIIPTGSTALDVALGVGGL 99

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GR+VEIYGPESSGKTTL LH +A +Q+ GG  AFVDAEHALD  YARKLGVD+ NL++
Sbjct: 100 PRGRVVEIYGPESSGKTTLTLHAVANAQRAGGQVAFVDAEHALDPEYARKLGVDIDNLIL 159

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALR
Sbjct: 160 SQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 219

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           K+TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD   
Sbjct: 220 KITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTE 279

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
             GN+TR KVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++  
Sbjct: 280 AVGNRTRCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYESG 339

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLV--ADSLLQEPAINTKDDADKDD 358
           +LGQG+EN++ FL++N ++A+ IE  ++   G+    ++   EP  +    A  D+
Sbjct: 340 QLGQGKENARNFLKDNPDLADEIEKKIKDKLGVGVRTEAPGAEPGPDAAGAAPGDE 395


>gi|158313071|ref|YP_001505579.1| recombinase A [Frankia sp. EAN1pec]
 gi|158108476|gb|ABW10673.1| recA protein [Frankia sp. EAN1pec]
          Length = 347

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 210/348 (60%), Positives = 267/348 (76%), Gaps = 4/348 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KALE AL+QI + +GKG++M+LG        I+ + +GS+ LD+ALGIGG P+
Sbjct: 1   MAGPDRDKALENALAQIDKQFGKGSVMRLGDDTR--PPIQAIPTGSIALDVALGIGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA KLGVD   LL+SQ
Sbjct: 59  GRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAGKLGVDTDALLVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI DML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDTGEQALEIADMLIRSGALDVIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T +++ S    +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     
Sbjct: 179 TGALANSGTTAIFINQLREKVGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTEAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNKMA PF+  EFDI+YG GIS  G LID+GV+  I+ KSGAW+++ G +L
Sbjct: 239 GNRTRVKVVKNKMAPPFRTAEFDIVYGGGISREGSLIDMGVEHGIIRKSGAWYTYDGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA--DSLLQEPAINTKD 352
           GQG+EN++ FLR+N ++A  IE  +++  GL    D+    PA    D
Sbjct: 299 GQGKENARSFLRDNPDLANEIEKRIKEKLGLSPTLDADADAPAPVPVD 346


>gi|294631803|ref|ZP_06710363.1| RecA protein [Streptomyces sp. e14]
 gi|292835136|gb|EFF93485.1| RecA protein [Streptomyces sp. e14]
          Length = 375

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 217/348 (62%), Positives = 278/348 (79%), Gaps = 4/348 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G +    E IEV+ +GS  LD+ALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRMGERSK--EPIEVIPTGSTALDVALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YARKLGVD+ NL++SQ
Sbjct: 59  GRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYARKLGVDIDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTEAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR KVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           GQG+EN++ FL++N ++A  IE  +++  G+      +EPA     DA
Sbjct: 299 GQGKENARNFLKDNPDLANEIERKIKEKLGVGVRP--EEPAAEPGADA 344


>gi|239982694|ref|ZP_04705218.1| recombinase A [Streptomyces albus J1074]
          Length = 374

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 214/358 (59%), Positives = 283/358 (79%), Gaps = 4/358 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G + +  E +EV+ +GS  LDIALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRMGERPN--EPVEVIPTGSTALDIALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE+YGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 59  GRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR KVVKNK+A PFKQ EFDI+YG GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRCKVVKNKVAPPFKQAEFDILYGHGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV--ADSLLQEPAINTKDDADKDDTDNV 362
           GQG+EN++ FL++N ++A+ IE  +++  G+    D+   E A ++    +  +  +V
Sbjct: 299 GQGKENARNFLKDNPDLADEIERKIKEKLGVGVRPDAAGSEAAADSAATEEAKEAKSV 356


>gi|148260042|ref|YP_001234169.1| recA protein [Acidiphilium cryptum JF-5]
 gi|326403005|ref|YP_004283086.1| recombinase A [Acidiphilium multivorum AIU301]
 gi|189039588|sp|A5FXB8|RECA_ACICJ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|146401723|gb|ABQ30250.1| recA protein [Acidiphilium cryptum JF-5]
 gi|325049866|dbj|BAJ80204.1| recombinase A [Acidiphilium multivorum AIU301]
          Length = 343

 Score =  396 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 240/344 (69%), Positives = 299/344 (86%), Gaps = 1/344 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           ++K+KAL+AAL+QI+R +GKG+IM++GS+    E I+V+S+GSLGLD+ALGIGG P+GR+
Sbjct: 1   MEKNKALDAALAQIERAFGKGSIMRMGSRSES-EAIDVISTGSLGLDLALGIGGLPRGRV 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALH +A++QK GGTCAFVDAEHALD IYARKLGVD+ NLLISQPDT
Sbjct: 60  IEIYGPESSGKTTLALHAVAEAQKRGGTCAFVDAEHALDPIYARKLGVDVDNLLISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EG+MG+S  G+ ARLMSQALRKLT S
Sbjct: 120 GEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDSHVGLHARLMSQALRKLTGS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ISRSK +++F+NQ+R+KIGVMFG+PETTTGGNALKFY+S+R+DIRR+GSIKD++ +TGNQ
Sbjct: 180 ISRSKTLVIFLNQIRLKIGVMFGNPETTTGGNALKFYASIRMDIRRIGSIKDREEVTGNQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PF+QVEFDIMYGEGIS  GEL+DLGVKA IV+KSGAWFS   QR+GQG
Sbjct: 240 TRVKVVKNKLAPPFRQVEFDIMYGEGISKVGELLDLGVKAGIVEKSGAWFSCDSQRIGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           REN+K FLR+N ++A +IE  +R  A LV  +++ +       D
Sbjct: 300 RENAKQFLRDNPDVAASIEQRIRAQANLVEAAMITDETETEAAD 343


>gi|295836173|ref|ZP_06823106.1| conserved hypothetical protein [Streptomyces sp. SPB74]
 gi|197695273|gb|EDY42206.1| conserved hypothetical protein [Streptomyces sp. SPB74]
          Length = 377

 Score =  396 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 212/353 (60%), Positives = 281/353 (79%), Gaps = 2/353 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G + +  E IEV+ +GS  LDIALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRMGERPN--EPIEVIPTGSTALDIALGVGGIPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD  YARKLGVD+ NL++SQ
Sbjct: 59  GRVVEVYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYARKLGVDVDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR K+VKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRCKIVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           GQG+EN++ FL++N ++A+ IE  +++  G+      ++P        +  +T
Sbjct: 299 GQGKENARNFLKDNPDLADEIERKIKEKLGVGVKPEKEKPEGEPVATEETAET 351


>gi|83858788|ref|ZP_00952310.1| recombinase A [Oceanicaulis alexandrii HTCC2633]
 gi|83853611|gb|EAP91463.1| recombinase A [Oceanicaulis alexandrii HTCC2633]
          Length = 360

 Score =  396 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 250/350 (71%), Positives = 308/350 (88%), Gaps = 4/350 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK KALEAAL+QI R +GKG++M+LG++    + I+ +S+GSLGLDIALG+GG PKGRI
Sbjct: 14  MDKQKALEAALTQIDRAFGKGSVMKLGAKPD--QDIQAISTGSLGLDIALGVGGLPKGRI 71

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A+ QK+GGT AFVDAEHALD +YARKLGVD+  LL+SQPD 
Sbjct: 72  VEIYGPESSGKTTLALHTVAECQKSGGTAAFVDAEHALDPVYARKLGVDVSELLVSQPDA 131

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++VIDSVAALTPRAE+EGDMG+SLPG+QARLMSQALRKLT+S
Sbjct: 132 GEQALEIADTLVRSGAIDVLVIDSVAALTPRAELEGDMGDSLPGLQARLMSQALRKLTAS 191

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IK++D + GNQ
Sbjct: 192 ISKSKCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKNRDEVIGNQ 251

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PF++VEFDI+YGEGIS  GEL+DLGVK +I++KSG+W+S   +R+GQG
Sbjct: 252 TRVKVVKNKVAPPFREVEFDILYGEGISKTGELLDLGVKGNIIEKSGSWYSHDSERIGQG 311

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           REN++ FL +N EIA+ IE+ +R+NAGL+AD LL  P  +  DD D + T
Sbjct: 312 RENARQFLLDNPEIADRIEAQVRKNAGLIADELLVGPGED--DDLDDEAT 359


>gi|86742207|ref|YP_482607.1| recombinase A [Frankia sp. CcI3]
 gi|123750817|sp|Q2J764|RECA_FRASC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|86569069|gb|ABD12878.1| recA protein [Frankia sp. CcI3]
          Length = 345

 Score =  396 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 207/346 (59%), Positives = 267/346 (77%), Gaps = 2/346 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M  +D+ KAL+ AL+QI + +GKG++M+LG        ++ + +GS+ LD+ALGIGG P+
Sbjct: 1   MAGLDREKALDNALAQIDKQFGKGSVMRLGDDTR--PPVQAIPTGSIALDVALGIGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA KLGVD   LL+SQ
Sbjct: 59  GRIIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAGKLGVDTDGLLVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKM 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T++++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     
Sbjct: 179 TAALANSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTEAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PF+  EFDI+YG GIS  G LID+GV+  I+ KSGAW+++ G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFRTAEFDIVYGGGISREGSLIDMGVEHGIIRKSGAWYTYDGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GQG+EN++ FLR+N ++A  IE  +++  G++        A    D
Sbjct: 299 GQGKENARSFLRDNPDLANEIEKKIKEKLGILPSLESDAVAPVPVD 344


>gi|291454543|ref|ZP_06593933.1| RecA protein [Streptomyces albus J1074]
 gi|291357492|gb|EFE84394.1| RecA protein [Streptomyces albus J1074]
          Length = 377

 Score =  396 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 214/360 (59%), Positives = 284/360 (78%), Gaps = 4/360 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           + M   D+ KAL+AAL+QI+R +GKGA+M++G + +  E +EV+ +GS  LDIALG+GG 
Sbjct: 2   EPMAGTDREKALDAALAQIERQFGKGAVMRMGERPN--EPVEVIPTGSTALDIALGVGGL 59

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GR+VE+YGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KLGVD+ NL++
Sbjct: 60  PRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLIL 119

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALR
Sbjct: 120 SQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 179

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           K+TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD   
Sbjct: 180 KITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTD 239

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
             GN+TR KVVKNK+A PFKQ EFDI+YG GIS  G LID+GV+   V K+GAW++++G 
Sbjct: 240 AVGNRTRCKVVKNKVAPPFKQAEFDILYGHGISREGGLIDMGVEHGFVRKAGAWYTYEGD 299

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLV--ADSLLQEPAINTKDDADKDDTDNV 362
           +LGQG+EN++ FL++N ++A+ IE  +++  G+    D+   E A ++    +  +  +V
Sbjct: 300 QLGQGKENARNFLKDNPDLADEIERKIKEKLGVGVRPDAAGSEAAADSAATEEAKEAKSV 359


>gi|258654119|ref|YP_003203275.1| recA protein [Nakamurella multipartita DSM 44233]
 gi|258557344|gb|ACV80286.1| recA protein [Nakamurella multipartita DSM 44233]
          Length = 352

 Score =  396 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 213/346 (61%), Positives = 269/346 (77%), Gaps = 2/346 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+  D+ KAL  AL+QI++ YGKG+IM+LG  G     +EV+ +GS+ LD+ALGIGG P+
Sbjct: 8   MSAPDREKALGIALAQIEKQYGKGSIMRLGDDGRA--PVEVIPTGSIALDVALGIGGLPR 65

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++EIYGPESSGKTTL LH +A  Q  GG  AF+DAEHALD  YAR LGVD   LL+SQ
Sbjct: 66  GRVIEIYGPESSGKTTLTLHAVASVQAAGGIAAFIDAEHALDPEYARSLGVDTDALLVSQ 125

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI DML+RSGA+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 126 PDTGEQALEIADMLIRSGAIDLVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 185

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
             ++S +   ++FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD   + 
Sbjct: 186 AGALSTTNTTMIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDIRRIEALKDGAEVV 245

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNKMA PFKQ EFDI+YG GIS  G LID+GV+  +V K+GAW+++ G++L
Sbjct: 246 GNRTRVKVVKNKMAPPFKQAEFDIIYGRGISREGSLIDVGVEQGLVRKAGAWYTYDGEQL 305

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GQG+EN + FLREN +IA  IE  +++  G+ A     EP     D
Sbjct: 306 GQGKENVRTFLRENPDIANEIEKRIKEKLGVGARIDQDEPLPAPVD 351


>gi|118588632|ref|ZP_01546040.1| recombinase A [Stappia aggregata IAM 12614]
 gi|118438618|gb|EAV45251.1| recombinase A [Stappia aggregata IAM 12614]
          Length = 344

 Score =  396 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 252/347 (72%), Positives = 311/347 (89%), Gaps = 3/347 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KAL+AALSQI+R +GKG+IM++G    +   ++ VS+GSLGLDIALGIGG P+GRI
Sbjct: 1   MDKTKALDAALSQIERAFGKGSIMKMGQGQVV--EVQAVSTGSLGLDIALGIGGLPRGRI 58

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH ++++QKTGG CAF+DAEHALD IYARKLGVD+ NLLISQPD 
Sbjct: 59  VEIYGPESSGKTTLALHAVSEAQKTGGICAFIDAEHALDPIYARKLGVDIDNLLISQPDA 118

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++VIDSVAALTP+AE+EG+MG+SLPGMQARLMSQALRKLT+S
Sbjct: 119 GEQALEIADTLVRSGAIDVLVIDSVAALTPKAELEGEMGDSLPGMQARLMSQALRKLTAS 178

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D + GNQ
Sbjct: 179 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDEVVGNQ 238

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PF+QVEFDI+YGEG+S  GELIDLGVK +IV+KSGAWFS+  QRLGQG
Sbjct: 239 TRVKVVKNKLAPPFRQVEFDIVYGEGVSKTGELIDLGVKGNIVEKSGAWFSYNSQRLGQG 298

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           REN+K FL++N EIA+ IE  +RQNAGL+A++++ +P    +++A+ 
Sbjct: 299 RENAKQFLKDNPEIADEIELAIRQNAGLIAEAII-DPDAGVEEEAED 344


>gi|290956979|ref|YP_003488161.1| DNA recombinase A [Streptomyces scabiei 87.22]
 gi|260646505|emb|CBG69602.1| DNA recombinase A [Streptomyces scabiei 87.22]
          Length = 375

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 215/348 (61%), Positives = 279/348 (80%), Gaps = 4/348 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M+LG + +  E IEV+ +GS  LD+ALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++E+YGPESSGKTTL LH +A +Q+ GG  AFVDAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 59  GRVIEVYGPESSGKTTLTLHAVANAQRAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVENGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           GQG+EN++ FL++N ++A  IE  +++  G+      +EP      DA
Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKIKEKLGVGVRP--EEPTGQPGADA 344


>gi|328885471|emb|CCA58710.1| RecA protein [Streptomyces venezuelae ATCC 10712]
          Length = 378

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 215/331 (64%), Positives = 275/331 (83%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G +    E IEV+S+GS  LDIALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRMGDRTQ--EPIEVISTGSTALDIALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 59  GRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FL++N ++A+ IE  +++  G+
Sbjct: 299 GQGKENARNFLKDNPDLADEIERKIKEKLGV 329


>gi|1350566|sp|P48295|RECA_STRVL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|508860|gb|AAB36572.1| RecA protein [Streptomyces venezuelae ATCC 10712]
          Length = 377

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 215/331 (64%), Positives = 275/331 (83%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G +    E IEV+S+GS  LDIALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRMGDRTQ--EPIEVISTGSTALDIALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 59  GRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FL++N ++A+ IE  +++  G+
Sbjct: 299 GQGKENARNFLKDNPDLADEIERKIKEKLGV 329


>gi|78173105|gb|ABB29469.1| RecA [Streptomyces argillaceus]
          Length = 376

 Score =  395 bits (1014), Expect = e-108,   Method: Composition-based stats.
 Identities = 210/331 (63%), Positives = 273/331 (82%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G +    E IEV+ +GS  LD+ALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRMGDRSK--EPIEVIPTGSTALDVALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++E+YGPESSGKTTL LH +A +Q+ GG  AFVDAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 59  GRVIEVYGPESSGKTTLTLHAVANAQRAGGQVAFVDAEHALDPEYAQKLGVDIDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FL++N ++A  IE  +++  G+
Sbjct: 299 GQGKENARNFLKDNPDLANEIERKIKEKLGV 329


>gi|319408737|emb|CBI82394.1| RecA protein [Bartonella schoenbuchensis R1]
          Length = 347

 Score =  395 bits (1014), Expect = e-108,   Method: Composition-based stats.
 Identities = 253/346 (73%), Positives = 303/346 (87%), Gaps = 1/346 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KAL++ALSQI+R +GKG+IM+LG +  + E IE + +GSL LDIALG+GG PKGRI
Sbjct: 1   MDKTKALDSALSQIERSFGKGSIMRLGQKEQVVE-IETIPTGSLSLDIALGVGGLPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALH IA++QK+GG CAFVDAEHALD IYARKLGV L++LLISQPDT
Sbjct: 60  IEIYGPESSGKTTLALHAIAEAQKSGGVCAFVDAEHALDPIYARKLGVKLEDLLISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + LVRSGA+D++V+DSVAALTPRAEI+G+M +S+PG+QARLMS+ALRKLT+S
Sbjct: 120 GEQALEIAETLVRSGAIDVLVVDSVAALTPRAEIDGEMNDSVPGLQARLMSKALRKLTAS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRRVG+IKD+D + GNQ
Sbjct: 180 IFRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGAIKDRDMVIGNQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDI+YGEGIS  GELIDLGVKA IV+KSG+WFS+  QRLGQG
Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIIYGEGISKVGELIDLGVKAGIVEKSGSWFSYNSQRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           REN+K FL EN EIA  IES LRQNAGL+A  LL+   +   +  +
Sbjct: 300 RENAKQFLHENAEIATEIESALRQNAGLLAIELLENAGLENTESEE 345


>gi|318061001|ref|ZP_07979722.1| recombinase A [Streptomyces sp. SA3_actG]
 gi|318079874|ref|ZP_07987206.1| recombinase A [Streptomyces sp. SA3_actF]
          Length = 378

 Score =  395 bits (1014), Expect = e-108,   Method: Composition-based stats.
 Identities = 211/350 (60%), Positives = 277/350 (79%), Gaps = 2/350 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G + +  E IEV+ +GS  LDIALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRMGERPN--EPIEVIPTGSTALDIALGVGGIPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE+YGPESSGKTTL LH +A +QK GG  AF+DAEHALD  YARKLGVD+ NL++SQ
Sbjct: 59  GRVVEVYGPESSGKTTLTLHAVANAQKAGGAVAFIDAEHALDPEYARKLGVDVDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR K+VKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRCKIVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           GQG+EN++ FL++N ++A+ IE  +++  G+       E         ++
Sbjct: 299 GQGKENARNFLKDNPDLADEIERKIKEKLGVGVKPEKTEKPEGEPAATEE 348


>gi|302522274|ref|ZP_07274616.1| recA protein [Streptomyces sp. SPB78]
 gi|302431169|gb|EFL02985.1| recA protein [Streptomyces sp. SPB78]
          Length = 378

 Score =  395 bits (1014), Expect = e-108,   Method: Composition-based stats.
 Identities = 211/350 (60%), Positives = 277/350 (79%), Gaps = 2/350 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G + +  E IEV+ +GS  LDIALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRMGERPN--EPIEVIPTGSTALDIALGVGGIPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE+YGPESSGKTTL LH +A +QK GG  AF+DAEHALD  YARKLGVD+ NL++SQ
Sbjct: 59  GRVVEVYGPESSGKTTLTLHAVANAQKAGGAVAFIDAEHALDPEYARKLGVDVDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR K+VKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRCKIVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           GQG+EN++ FL++N ++A+ IE  +++  G+       E         ++
Sbjct: 299 GQGKENARNFLKDNPDLADEIERKIKEKLGVGVKPEKTEKPEGEPAATEE 348


>gi|312195020|ref|YP_004015081.1| recA protein [Frankia sp. EuI1c]
 gi|311226356|gb|ADP79211.1| recA protein [Frankia sp. EuI1c]
          Length = 345

 Score =  395 bits (1014), Expect = e-108,   Method: Composition-based stats.
 Identities = 207/333 (62%), Positives = 267/333 (80%), Gaps = 2/333 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+ AL+QI + +GKG++M+LG +      I+ + +GS+ LD+ALGIGG P+
Sbjct: 1   MAGPDRDKALDNALAQIDKQFGKGSVMRLGDETRA--PIQAIPTGSIALDVALGIGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA KLGVD  NLL+SQ
Sbjct: 59  GRIIEIYGPESSGKTTVALHAVASAQAAGGIAAFIDAEHALDPDYAGKLGVDTDNLLVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D+LVRSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDTGEQALEIADLLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKM 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T ++S S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     
Sbjct: 179 TGALSNSNTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGADAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PF+  EFDI+YG GIS  G LID+GV+ +I+ KSGAW+++ G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFRTAEFDIVYGGGISREGSLIDMGVEHAIIRKSGAWYTYDGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           GQG+EN++ FLR+N ++A+ IE  +++  G++ 
Sbjct: 299 GQGKENARNFLRDNPDLADEIEKRIKEKLGIIP 331


>gi|254502491|ref|ZP_05114642.1| protein RecA [Labrenzia alexandrii DFL-11]
 gi|222438562|gb|EEE45241.1| protein RecA [Labrenzia alexandrii DFL-11]
          Length = 355

 Score =  394 bits (1013), Expect = e-108,   Method: Composition-based stats.
 Identities = 260/348 (74%), Positives = 308/348 (88%), Gaps = 2/348 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DK+KAL+AALSQI+R +GKG+IM++G    +   ++ VS+GSLGLDIALGIGG P
Sbjct: 10  ESSQMDKTKALDAALSQIERAFGKGSIMRMGQGQVV--EVQSVSTGSLGLDIALGIGGLP 67

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHT+A++QKTGG CAF+DAEHALD IYARKLGVD+ NLLIS
Sbjct: 68  KGRIVEIYGPESSGKTTLALHTVAEAQKTGGICAFIDAEHALDPIYARKLGVDIDNLLIS 127

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI D LVRSGA+D++VIDSVAALTP+AE+EG+MG+SLPGMQARLMSQALRK
Sbjct: 128 QPDAGEQALEIADTLVRSGAIDVLVIDSVAALTPKAELEGEMGDSLPGMQARLMSQALRK 187

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SIS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKDKD +
Sbjct: 188 LTASISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDKDEV 247

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PF+QVEFDI+YGEG+S  GELIDLGVK  IV+KSGAWFS+  QR
Sbjct: 248 VGNQTRVKVVKNKLAPPFRQVEFDIIYGEGVSKMGELIDLGVKGGIVEKSGAWFSYNSQR 307

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           LGQGRENSK FLREN EIA+ IE  +RQNAGL+A++++        DD
Sbjct: 308 LGQGRENSKQFLRENKEIADEIELSIRQNAGLIAEAIIDPAGGEEDDD 355


>gi|297156748|gb|ADI06460.1| recombinase A [Streptomyces bingchenggensis BCW-1]
          Length = 378

 Score =  394 bits (1013), Expect = e-108,   Method: Composition-based stats.
 Identities = 214/344 (62%), Positives = 279/344 (81%), Gaps = 4/344 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G + +  E IEV+ +GS  LD+ALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRMGERPN--EPIEVIPTGSTALDVALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE++GPESSGKTTL LH +A +Q+ GG  AFVDAEHALD  YA+KLGVD  +L++SQ
Sbjct: 59  GRVVEVFGPESSGKTTLTLHAVANAQRAGGAVAFVDAEHALDPDYAQKLGVDTDSLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTEAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V KSGAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKSGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           GQG+EN++ FL++N ++A  IE  +++  G+      +EPA+  
Sbjct: 299 GQGKENARNFLKDNPDLANEIERKIKEKLGIGVKR--EEPAVEP 340


>gi|5103048|dbj|BAA78779.1| RecA protein [Rhodopseudomonas palustris]
          Length = 363

 Score =  394 bits (1013), Expect = e-108,   Method: Composition-based stats.
 Identities = 246/353 (69%), Positives = 306/353 (86%), Gaps = 4/353 (1%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DKSKAL AALSQI+R +GKG++M+LG      E IE +SSGSLGLDIALG+GG P
Sbjct: 11  EGSSMDKSKALSAALSQIERQFGKGSVMKLGKNDRAME-IETISSGSLGLDIALGVGGLP 69

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALH +A++QK GG CAF+DAEHALD +YARKLGV++ +LLIS
Sbjct: 70  KGRIVEIYGPESSGKTTLALHCVAEAQKKGGICAFIDAEHALDPVYARKLGVNVDDLLIS 129

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI D LVRSGA+D++++DSVAAL PRAE+EG+MG++LPG+QARLMSQALRK
Sbjct: 130 QPDHGEQALEIADTLVRSGAIDVLIVDSVAALVPRAELEGEMGDALPGLQARLMSQALRK 189

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SI++S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D +
Sbjct: 190 LTASINKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEV 249

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYGEG+S  GE++DLGVKA IV+KSGAWFS+  QR
Sbjct: 250 IGNQTRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSYDSQR 309

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           LGQGREN+K FLR N ++   IE+ +RQN+GL+A+ +L   A + + DAD ++
Sbjct: 310 LGQGRENAKSFLRSNPDMTAKIEAAIRQNSGLIAEQIL---AGSPERDADGEE 359


>gi|744163|prf||2014250A recA-like protein
          Length = 377

 Score =  394 bits (1013), Expect = e-108,   Method: Composition-based stats.
 Identities = 214/331 (64%), Positives = 274/331 (82%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G +    E IEV+S+GS  LDIALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRMGDRTQ--EPIEVISTGSTALDIALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 59  GRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALR +
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRNI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FL++N ++A+ IE  +++  G+
Sbjct: 299 GQGKENARNFLKDNPDLADEIERKIKEKLGV 329


>gi|115523612|ref|YP_780523.1| recombinase A [Rhodopseudomonas palustris BisA53]
 gi|115517559|gb|ABJ05543.1| RecA protein [Rhodopseudomonas palustris BisA53]
          Length = 362

 Score =  394 bits (1013), Expect = e-108,   Method: Composition-based stats.
 Identities = 243/354 (68%), Positives = 297/354 (83%), Gaps = 1/354 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DKSKAL AALSQI+R +GKG++M+LG        +E +S+GSLGLDIALG+GG P
Sbjct: 10  EGSSMDKSKALAAALSQIERQFGKGSVMRLGKNDRSM-DVETISTGSLGLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR+VEIYGPESSGKTTLALH  A++QK GG CAF+DAEHALD IYARKLGV++  LLIS
Sbjct: 69  KGRVVEIYGPESSGKTTLALHCAAEAQKKGGICAFIDAEHALDPIYARKLGVNVDELLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI D LVRSGAVD++++DSVAAL PRAE+EG+MG++LPG+QARLMSQALRK
Sbjct: 129 QPDHGEQALEIADTLVRSGAVDVLIVDSVAALVPRAELEGEMGDALPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SI++S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G IK++D +
Sbjct: 189 LTASINKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGQIKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYGEG+S  GE++DLGVKA IVDKSGAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVDKSGAWFSYDSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           LGQGRENSK FL+ N +I   IE+ +RQN+GL+A+ +L        D  +  + 
Sbjct: 309 LGQGRENSKTFLKGNPDITAKIEAAIRQNSGLIAEQILAGSPERDADGEEPGEE 362


>gi|217979628|ref|YP_002363775.1| recA protein [Methylocella silvestris BL2]
 gi|217505004|gb|ACK52413.1| recA protein [Methylocella silvestris BL2]
          Length = 355

 Score =  394 bits (1013), Expect = e-108,   Method: Composition-based stats.
 Identities = 255/347 (73%), Positives = 303/347 (87%), Gaps = 1/347 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE V +GSLGLD+ALG+GG P
Sbjct: 10  EGTSVDKTKALDAALSQIERAFGKGSIMRLGKNQKVVE-IETVPTGSLGLDVALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GR+VEIYGPESSGKTTL LH IA++QK GG CAF+DAEHALD+IYARKLGV+L++LL+S
Sbjct: 69  RGRVVEIYGPESSGKTTLTLHVIAEAQKKGGVCAFIDAEHALDTIYARKLGVNLEDLLVS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+S PG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSQPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SISRS  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+GSIKD + +
Sbjct: 189 LTASISRSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGSIKDHEEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYGEGIS  GELIDLGVKA +V+KSGAWFS+  QR
Sbjct: 249 IGNQTRVKVVKNKVAPPFKQVEFDIMYGEGISKIGELIDLGVKAGVVEKSGAWFSYDSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           LGQGRENSK FL+ + EIA+ IE  +R+NAG++AD +L       +D
Sbjct: 309 LGQGRENSKAFLKAHPEIADKIELAIRENAGMIADKILDVGEEEAED 355


>gi|296448224|ref|ZP_06890120.1| recA protein [Methylosinus trichosporium OB3b]
 gi|296254264|gb|EFH01395.1| recA protein [Methylosinus trichosporium OB3b]
          Length = 358

 Score =  394 bits (1013), Expect = e-108,   Method: Composition-based stats.
 Identities = 260/353 (73%), Positives = 307/353 (86%), Gaps = 4/353 (1%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDK+KAL+AALSQI+R +GKG+IM+LG      E IE +S+GSLGLDIALG+GG P
Sbjct: 10  EGTSVDKTKALDAALSQIERAFGKGSIMRLGKNQKAVE-IETISTGSLGLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GR+VEIYGPESSGKTTL LH IA++QK GG CAFVDAEHALD +YARKLGV+L+ LLIS
Sbjct: 69  RGRVVEIYGPESSGKTTLTLHVIAEAQKKGGVCAFVDAEHALDPVYARKLGVNLEELLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MGE  PG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGEVQPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SISRS  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+GSIKD+D +
Sbjct: 189 LTASISRSNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGSIKDRDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           TGNQTRVKVVKNK+A PFKQVEFDIMYGEG+S  GEL+DLGVKA +VDKSGAWFSF  QR
Sbjct: 249 TGNQTRVKVVKNKVAPPFKQVEFDIMYGEGVSKVGELVDLGVKAGVVDKSGAWFSFDSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           LGQGREN+K FL++N E AE IE+ +R+NAGL+A+ +L       +DDA  ++
Sbjct: 309 LGQGRENAKAFLKQNKEAAERIEAAIRENAGLIAERILD---AGGEDDAAGEE 358


>gi|83309721|ref|YP_419985.1| recombinase A [Magnetospirillum magneticum AMB-1]
 gi|123754202|sp|Q2W9P9|RECA_MAGSA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|82944562|dbj|BAE49426.1| RecA protein [Magnetospirillum magneticum AMB-1]
          Length = 359

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 243/341 (71%), Positives = 296/341 (86%), Gaps = 1/341 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           + + +D+ KALEAA+SQI+R +GKG+IM+LG +  + E  EVVS+GSLGLD+ALGIGG P
Sbjct: 10  DKDTMDRQKALEAAVSQIERAFGKGSIMKLGGKDQVVE-TEVVSTGSLGLDVALGIGGVP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+E+YGPESSGKTTLALH IA++QK GGTCAFVDAEHALD  YARKLGV+L  LLIS
Sbjct: 69  RGRIIEVYGPESSGKTTLALHIIAEAQKKGGTCAFVDAEHALDPSYARKLGVNLDELLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI D LVRSGAVD++V+DSVAAL PRAE+EG+MG++  G+ ARLMSQALRK
Sbjct: 129 QPDAGEQALEIADTLVRSGAVDVLVVDSVAALVPRAELEGEMGDNHMGLHARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT S+S+SK I++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR++IRRVG+IKD+D +
Sbjct: 189 LTGSVSKSKTIVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMEIRRVGAIKDRDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFK V+FDIMYGEGIS  GELIDLGVKA++V+KSGAWFS+   R
Sbjct: 249 VGNQTRVKVVKNKLAPPFKVVDFDIMYGEGISKMGELIDLGVKANVVEKSGAWFSYNSTR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           +GQGREN+K FLREN  +A  IE  +RQNAGL++++L   P
Sbjct: 309 IGQGRENAKTFLRENPAMAAEIEGAIRQNAGLISEALAGGP 349


>gi|296269101|ref|YP_003651733.1| recA protein [Thermobispora bispora DSM 43833]
 gi|296091888|gb|ADG87840.1| recA protein [Thermobispora bispora DSM 43833]
          Length = 365

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 207/333 (62%), Positives = 273/333 (81%), Gaps = 2/333 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M + D+ KALE AL+QI+R +GKG++M+LG +      IEV+ +GS+ LD+ALGIGGFP+
Sbjct: 1   MALSDREKALETALAQIERQFGKGSVMRLGDEARA--PIEVIPTGSIALDVALGIGGFPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVE++GPESSGKTT+ALH +A +QK GG  AF+DAEHALD  YARKLGVD+  LL+SQ
Sbjct: 59  GRIVEVFGPESSGKTTVALHAVANAQKAGGIAAFIDAEHALDPEYARKLGVDVDALLVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI DML+RSGA+DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDTGEQALEIADMLIRSGAIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKV 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
             ++S ++   +FINQ+R KIGVMFG+PETTTGG ALKFY+S+RLD+RR+ ++KD     
Sbjct: 179 AGALSHTRTTAIFINQLREKIGVMFGNPETTTGGKALKFYASIRLDVRRIETLKDGTEPI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PF+Q +FDI+YG GIS  G L+D+GV+  IV K+GAW++++G++L
Sbjct: 239 GNRTRVKVVKNKLAPPFRQADFDILYGVGISREGGLLDMGVEQGIVRKAGAWYTYEGEQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           GQG+EN++ FLR N +IA+ IE  +++  G+  
Sbjct: 299 GQGKENARNFLRNNPDIADEIEKKIKEKLGIGP 331


>gi|319899071|ref|YP_004159164.1| RecA protein [Bartonella clarridgeiae 73]
 gi|319403035|emb|CBI76590.1| RecA protein [Bartonella clarridgeiae 73]
          Length = 347

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 258/350 (73%), Positives = 310/350 (88%), Gaps = 4/350 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KALEAALSQI+R +GKG+IM+LG +  + E IE VS+GSL LDIALG+GG PKGRI
Sbjct: 1   MDKTKALEAALSQIERSFGKGSIMRLGQKEQVVE-IETVSTGSLSLDIALGVGGLPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALH+IA++QK GG CAF+DAEHALD IYARKLGVDL+NL ISQPDT
Sbjct: 60  IEIYGPESSGKTTLALHSIAEAQKNGGICAFIDAEHALDPIYARKLGVDLENLFISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEIT+ LVRSGAVD++V+DSVAALTPRAEI+G+MG++LPG+QARLMSQALRKLT+S
Sbjct: 120 GEQALEITETLVRSGAVDVLVVDSVAALTPRAEIDGEMGDALPGLQARLMSQALRKLTAS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D++ G+Q
Sbjct: 180 IFRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDTVIGSQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDI+YGEGIS  GELIDLGVK  +V+KSG+WFS+  QRLGQG
Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIIYGEGISKLGELIDLGVKVGLVEKSGSWFSYNSQRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           REN+K FLRE  EIA  IE+ LRQNAGL+A  LL+       ++A+ D++
Sbjct: 300 RENAKQFLREYAEIAAEIETALRQNAGLIAIELLENAG---SENAEGDES 346


>gi|86750850|ref|YP_487346.1| recombinase A [Rhodopseudomonas palustris HaA2]
 gi|86573878|gb|ABD08435.1| RecA protein [Rhodopseudomonas palustris HaA2]
          Length = 364

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 243/354 (68%), Positives = 298/354 (84%), Gaps = 1/354 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DK+KAL AALSQI+R +GKG++M+LG        IE +SSGSLGLDIALG+GG P
Sbjct: 12  EGSSMDKTKALAAALSQIERQFGKGSVMKLGKNDRSM-DIETISSGSLGLDIALGVGGLP 70

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR+VEIYGPESSGKTTLALH  A++QK GG CAF+DAEHALD +YARKLGV++  LLIS
Sbjct: 71  KGRVVEIYGPESSGKTTLALHCAAEAQKKGGICAFIDAEHALDPVYARKLGVNVDELLIS 130

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI D LVRSGA+D++++DSVAAL PRAE+EGDMG++LPG+QARLMSQALRK
Sbjct: 131 QPDHGEQALEIADTLVRSGAIDVLIVDSVAALVPRAELEGDMGDALPGLQARLMSQALRK 190

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SI++S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G IK++D +
Sbjct: 191 LTASINKSHTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGQIKERDEV 250

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYGEG+S  GE++DLGVKA IV+KSGAWFS+  QR
Sbjct: 251 VGNQTRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSYDSQR 310

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           LGQGRENSK FLR N ++   IE+ +RQN+GL+A+ +L     +  D  +  D 
Sbjct: 311 LGQGRENSKAFLRANPDMTAKIEASIRQNSGLIAEQILAGSPESDADGEEPGDE 364


>gi|297717870|gb|ADI50078.1| RecA protein [Candidatus Odyssella thessalonicensis L13]
          Length = 349

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 241/349 (69%), Positives = 304/349 (87%), Gaps = 2/349 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+  DK KAL+AALSQI+R +GKG++M+LG + ++   IE +SSGSLGLDIALGIGGFP+
Sbjct: 1   MSTADKGKALDAALSQIERAFGKGSVMRLGQRETV--EIEALSSGSLGLDIALGIGGFPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTTLALH +A++QK GGTCAFVDAEHALD  YARKLGV++ NL+ISQ
Sbjct: 59  GRIIEIYGPESSGKTTLALHAVAEAQKVGGTCAFVDAEHALDPSYARKLGVNIDNLIISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D LVRSGA+D++++DSVAAL P+AE+EGDMG+S  G+QARLMSQALRKL
Sbjct: 119 PDTGEQALEIADTLVRSGAIDVLIVDSVAALVPKAELEGDMGDSHMGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
             SI+++ C+++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIKDKD +T
Sbjct: 179 AGSINKTNCMVIFINQIRQKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKDKDQVT 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GNQTRVKVVKNKMA PFK V+FDIMYGEG+S  GELIDLGV A +V+K+G+W+S   QR+
Sbjct: 239 GNQTRVKVVKNKMAPPFKVVDFDIMYGEGVSKTGELIDLGVSAGVVEKAGSWYSMGSQRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           GQG+E ++ FLR+N +IA  IE+ +R NAGL++D++++    N++D+AD
Sbjct: 299 GQGKEAARQFLRDNPDIANQIETAIRNNAGLLSDNMMRGSESNSEDEAD 347


>gi|302542080|ref|ZP_07294422.1| RecA protein [Streptomyces hygroscopicus ATCC 53653]
 gi|302459698|gb|EFL22791.1| RecA protein [Streptomyces himastatinicus ATCC 53653]
          Length = 376

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 209/341 (61%), Positives = 273/341 (80%), Gaps = 2/341 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G + +  + IEV+ +GS  LD+ALG+GG P+
Sbjct: 1   MAGNDREKALDAALAQIERQFGKGAVMRMGDRPN--DPIEVIPTGSTALDVALGVGGIPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE+YGPESSGKTTL LH +A +Q+ GG  AFVDAEHALD  YA+KLGVD  +L++SQ
Sbjct: 59  GRVVEVYGPESSGKTTLTLHAVANAQRAGGAVAFVDAEHALDPDYAQKLGVDTDSLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR KVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V KSGAW++++G +L
Sbjct: 239 GNRTRCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKSGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           GQG+EN++ FL++N ++A  IE  +++  G+          
Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKIKEKLGIGVKPADPTAE 339


>gi|170748646|ref|YP_001754906.1| recA protein [Methylobacterium radiotolerans JCM 2831]
 gi|238688878|sp|B1LWT6|RECA_METRJ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|170655168|gb|ACB24223.1| recA protein [Methylobacterium radiotolerans JCM 2831]
          Length = 363

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 258/349 (73%), Positives = 306/349 (87%), Gaps = 2/349 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKSKA++AALSQI+R +GKG+IM+LG +    + +E VS+GSLGLDIALG+GG P+GR++
Sbjct: 17  DKSKAIDAALSQIERAFGKGSIMRLG-KSDKVQEVETVSTGSLGLDIALGVGGLPRGRVI 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGV+L +LLISQPDTG
Sbjct: 76  EIYGPESSGKTTLALHTIAEAQKKGGVCAFVDAEHALDPVYARKLGVNLDDLLISQPDTG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MGES PG+QARLMSQALRKLT SI
Sbjct: 136 EQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGESQPGLQARLMSQALRKLTGSI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SRS C+++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+ ++KD+D   GNQ 
Sbjct: 196 SRSNCMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRISTLKDRDEAIGNQV 255

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDIM+GEG+S  GELIDLGVKA IV+KSGAWFS+  QRLGQGR
Sbjct: 256 RVKVVKNKVAPPFKQVEFDIMFGEGVSKVGELIDLGVKAGIVEKSGAWFSYNSQRLGQGR 315

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           ENSK FLR+N +IA  IE  +RQN+GLVA+ +L E A  T DD D+ + 
Sbjct: 316 ENSKGFLRDNPKIAAEIEGSIRQNSGLVAEKIL-ENAAPTADDLDEGEA 363


>gi|239944750|ref|ZP_04696687.1| recombinase A [Streptomyces roseosporus NRRL 15998]
          Length = 372

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 214/342 (62%), Positives = 279/342 (81%), Gaps = 4/342 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M+LG + +  E IEV+ +GS  LD+ALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE+YGPESSGKTTL LH +A +Q+ GG+ AF+DAEHALD  YA+KLGVD+ +L++SQ
Sbjct: 59  GRVVEVYGPESSGKTTLTLHAVANAQRQGGSVAFIDAEHALDPEYAKKLGVDIDSLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV--ADSLLQEP 346
           GQG+EN++ FL++N ++A  IE  + +  G+    D+   EP
Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKILEKLGVGVRPDAAAGEP 340


>gi|585797|sp|Q08327|RECA_ACEPO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|300185|gb|AAC60438.1| RecA [Gluconacetobacter polyoxogenes]
 gi|391592|dbj|BAA02478.1| RecA protein [Gluconacetobacter polyoxogenes]
          Length = 348

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 247/343 (72%), Positives = 300/343 (87%), Gaps = 2/343 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKALE ALSQI+R +GKG+IM++G + +  E ++V+S+GSLGLDIALGIGG P+GRI
Sbjct: 7   IDKSKALEGALSQIERAFGKGSIMRMGERPT--EQVDVISTGSLGLDIALGIGGLPRGRI 64

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH IA++Q+ GGTCAF+DAEHALD  YARKLGVD+ NLLISQPD 
Sbjct: 65  IEIYGPESSGKTTMALHAIAEAQRKGGTCAFIDAEHALDPGYARKLGVDVDNLLISQPDA 124

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT S
Sbjct: 125 GEQALEIADTLVRSGAVDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGS 184

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +SRS  +L+F+NQ+R+KIGVMFGSPE+TTGGNALKFY+SVR+DIRR+GSIKDKD +TGNQ
Sbjct: 185 VSRSNTMLIFLNQIRLKIGVMFGSPESTTGGNALKFYASVRMDIRRIGSIKDKDEVTGNQ 244

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PF+QVEFDIMYGEGIS  GELIDLGVKA IV+KSGAWFS   QR+GQG
Sbjct: 245 TRVKVVKNKMAPPFRQVEFDIMYGEGISKVGELIDLGVKAGIVEKSGAWFSCDSQRIGQG 304

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           REN+K FLR++ E+A +IE  +R+ AG+VA+++L  P  +  +
Sbjct: 305 RENAKQFLRDHPEMAADIERRVREQAGVVAEAMLVGPDEDGAE 347


>gi|89071225|ref|ZP_01158406.1| RecA [Oceanicola granulosus HTCC2516]
 gi|89043238|gb|EAR49467.1| RecA [Oceanicola granulosus HTCC2516]
          Length = 358

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 242/349 (69%), Positives = 291/349 (83%), Gaps = 1/349 (0%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           + + +  DK KAL++AL+QI+R +GKG+IM+LG    +   IE  S+GSLGLDIALGIGG
Sbjct: 10  KNDKSQADKQKALDSALAQIERQFGKGSIMKLGGDNKL-NDIEATSTGSLGLDIALGIGG 68

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            PKGRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YA+KLGV+L  LL
Sbjct: 69  LPKGRIIEIYGPESSGKTTLTLHCVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELL 128

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           ISQPDTGEQALEITD LVRSGAV ++V+DSVAALTP++E+EGDMG+S  G+ ARLMSQA+
Sbjct: 129 ISQPDTGEQALEITDTLVRSGAVSLVVVDSVAALTPKSELEGDMGDSSVGVHARLMSQAM 188

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D
Sbjct: 189 RKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRD 248

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GNQTRVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGVKA +VDKSG+WFS+  
Sbjct: 249 EVVGNQTRVKVVKNKVAPPFKQVEFDIMYGEGISKTGELLDLGVKAGVVDKSGSWFSYGD 308

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           +R+GQGREN+K FLREN +IA  IE  +R   GL  D +  + + +  +
Sbjct: 309 ERIGQGRENAKQFLRENTQIALAIEDKIRAAHGLDFDLMGDDNSDDLVE 357


>gi|103487210|ref|YP_616771.1| recombinase A [Sphingopyxis alaskensis RB2256]
 gi|98977287|gb|ABF53438.1| recA protein [Sphingopyxis alaskensis RB2256]
          Length = 360

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 234/354 (66%), Positives = 295/354 (83%), Gaps = 2/354 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           ++  K +N  D+ KAL+AAL+QI R +GKG++M+LGS+ ++   +E VS+GSLGLDIALG
Sbjct: 8   VESGKAVNGTDRQKALDAALAQIDRAFGKGSVMKLGSKEAM--QVEAVSTGSLGLDIALG 65

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG P+GR++EIYGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YARKLGVD+ 
Sbjct: 66  VGGLPRGRVIEIYGPESSGKTTLALHCIAEAQKIGGTAAFVDAEHALDPVYARKLGVDID 125

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            L++SQPDTGEQALEI D LVRS A+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMS
Sbjct: 126 ELIVSQPDTGEQALEIVDTLVRSNAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMS 185

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           Q+LRKLT SISRS+C+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IK
Sbjct: 186 QSLRKLTGSISRSRCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIK 245

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           + D I GN TRVKVVKNK+A PFKQVEFDIMYG+GIS  GE++D+GVKA +V+KSGAWFS
Sbjct: 246 NGDEIVGNTTRVKVVKNKVAPPFKQVEFDIMYGQGISKIGEILDIGVKAGLVEKSGAWFS 305

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           +   R+GQGREN+K FL+EN E+   +E+ +R     VA+ ++  P  +   DA
Sbjct: 306 YDSIRIGQGRENAKTFLKENPELMGRLEAAIRGRTDAVAEEMMAGPDDDVGGDA 359


>gi|91976208|ref|YP_568867.1| recombinase A [Rhodopseudomonas palustris BisB5]
 gi|91682664|gb|ABE38966.1| RecA protein [Rhodopseudomonas palustris BisB5]
          Length = 363

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 243/357 (68%), Positives = 303/357 (84%), Gaps = 4/357 (1%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DK+KAL AALSQI+R +GKG++M+LG        IE +SSGSLGLDIALG+GG P
Sbjct: 11  EGSSMDKTKALTAALSQIERQFGKGSVMRLGKNDRSM-DIETISSGSLGLDIALGVGGLP 69

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR+VEIYGPESSGKTTLALH +A++QK GG CAF+DAEHALD +YARKLGV++  LLIS
Sbjct: 70  KGRVVEIYGPESSGKTTLALHCVAEAQKKGGICAFIDAEHALDPVYARKLGVNVDELLIS 129

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI D LVRSGA+D++++DSVAAL PRAE+EG+MG++LPG+QARLMSQALRK
Sbjct: 130 QPDHGEQALEIADTLVRSGAIDVLIVDSVAALVPRAELEGEMGDALPGLQARLMSQALRK 189

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SI++S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G IK++D +
Sbjct: 190 LTASINKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGQIKERDEV 249

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYGEG+S  GE++DLGVKA IVDKSGAWFS   QR
Sbjct: 250 VGNQTRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVDKSGAWFSHDSQR 309

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           LGQGREN+K FL+ N ++   IE+ +RQN+GL+A+ +L   A + + DAD ++  + 
Sbjct: 310 LGQGRENAKAFLKANPDLTAKIEASIRQNSGLIAEQIL---AGSPESDADGEEPVDE 363


>gi|39936912|ref|NP_949188.1| recombinase A [Rhodopseudomonas palustris CGA009]
 gi|192292742|ref|YP_001993347.1| recombinase A [Rhodopseudomonas palustris TIE-1]
 gi|39650769|emb|CAE29292.1| recombination protein recA [Rhodopseudomonas palustris CGA009]
 gi|192286491|gb|ACF02872.1| recA protein [Rhodopseudomonas palustris TIE-1]
          Length = 363

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 245/353 (69%), Positives = 303/353 (85%), Gaps = 4/353 (1%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DKSKAL AALSQI+R +GKG++M+LG        IE +SSGSLGLDIALG+GG P
Sbjct: 11  EGSSMDKSKALSAALSQIERQFGKGSVMRLGKNDRSM-DIETISSGSLGLDIALGVGGLP 69

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALH +A++QK GG CAFVDAEHALD +YARKLGV++ +LLIS
Sbjct: 70  KGRIVEIYGPESSGKTTLALHCVAEAQKKGGICAFVDAEHALDPVYARKLGVNVDDLLIS 129

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI D LVRSGA+D++++DSVAAL PRAE+EG+MG++LPG+QARLMSQALRK
Sbjct: 130 QPDHGEQALEIADTLVRSGAIDVLIVDSVAALVPRAELEGEMGDALPGLQARLMSQALRK 189

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SI++S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G IK++D +
Sbjct: 190 LTASINKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGQIKERDEV 249

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYGEG+S  GE++DLGVKA IV+KSGAWFS   QR
Sbjct: 250 VGNQTRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSHDSQR 309

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           LGQGREN+K FL+ N ++   IE+ +RQN+GL+A+ +L   A + + DAD ++
Sbjct: 310 LGQGRENAKAFLKANPDMTAKIEAAIRQNSGLIAEQIL---AGSPESDADGEE 359


>gi|256375557|ref|YP_003099217.1| recA protein [Actinosynnema mirum DSM 43827]
 gi|255919860|gb|ACU35371.1| recA protein [Actinosynnema mirum DSM 43827]
          Length = 347

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 213/343 (62%), Positives = 270/343 (78%), Gaps = 2/343 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE AL+QI + +GKG++M+LG  G     IEV+ +G++ LD+ALGIGG P+GR+
Sbjct: 6   PDRDKALELALAQIDKQFGKGSVMRLGEDGRA--PIEVIPTGAIALDVALGIGGLPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YARKLGVD   LL+SQPDT
Sbjct: 64  VEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPDYARKLGVDTDALLVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRK+T +
Sbjct: 124 GEQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDNHVGLQARLMSQALRKITGA 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+
Sbjct: 184 LNSSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGGEPVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQ EFDI+YG GIS  G LID+GV   I+ KSGAW++++G +LGQG
Sbjct: 244 TRVKVVKNKVAPPFKQAEFDILYGHGISREGSLIDMGVDQGILRKSGAWYTYEGDQLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           +EN++ FLREN ++A  IE  +++  G+ A     + A    D
Sbjct: 304 KENARKFLRENPDVANEIEKRIKEKLGIGATLEADDTAPAPVD 346


>gi|239991215|ref|ZP_04711879.1| recombinase A [Streptomyces roseosporus NRRL 11379]
 gi|291448212|ref|ZP_06587602.1| recombinase A [Streptomyces roseosporus NRRL 15998]
 gi|291351159|gb|EFE78063.1| recombinase A [Streptomyces roseosporus NRRL 15998]
          Length = 375

 Score =  393 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 214/344 (62%), Positives = 280/344 (81%), Gaps = 4/344 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           + M   D+ KAL+AAL+QI+R +GKGA+M+LG + +  E IEV+ +GS  LD+ALG+GG 
Sbjct: 2   EPMAGTDREKALDAALAQIERQFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGL 59

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GR+VE+YGPESSGKTTL LH +A +Q+ GG+ AF+DAEHALD  YA+KLGVD+ +L++
Sbjct: 60  PRGRVVEVYGPESSGKTTLTLHAVANAQRQGGSVAFIDAEHALDPEYAKKLGVDIDSLIL 119

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALR
Sbjct: 120 SQPDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 179

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           K+TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD   
Sbjct: 180 KITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTD 239

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
             GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G 
Sbjct: 240 AVGNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGD 299

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLV--ADSLLQEP 346
           +LGQG+EN++ FL++N ++A  IE  + +  G+    D+   EP
Sbjct: 300 QLGQGKENARNFLKDNPDLANEIEKKILEKLGVGVRPDAAAGEP 343


>gi|239928555|ref|ZP_04685508.1| recombinase A [Streptomyces ghanaensis ATCC 14672]
 gi|291436881|ref|ZP_06576271.1| recA [Streptomyces ghanaensis ATCC 14672]
 gi|291339776|gb|EFE66732.1| recA [Streptomyces ghanaensis ATCC 14672]
          Length = 373

 Score =  393 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 215/347 (61%), Positives = 277/347 (79%), Gaps = 4/347 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G +    E IEV+ +GS  LD+ALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRMGERSK--EPIEVIPTGSTALDVALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 59  GRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTEAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR KVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           GQG+EN++ FL++N ++A  IE  +++  G+      +EPA     D
Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKIKEKLGVGVRP--EEPATEPGTD 343


>gi|29829034|ref|NP_823668.1| recombinase A [Streptomyces avermitilis MA-4680]
 gi|37537927|sp|Q82KB1|RECA_STRAW RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|29606140|dbj|BAC70203.1| putative recombination protein RecA [Streptomyces avermitilis
           MA-4680]
          Length = 377

 Score =  393 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 215/342 (62%), Positives = 277/342 (80%), Gaps = 4/342 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M+LG + +  E IEV+ +GS  LD+ALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE+YGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 59  GRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVENGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV--ADSLLQEP 346
           GQG+EN++ FL++N ++A  IE  +++  G+    +    EP
Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKIKEKLGVGVRPEEPTAEP 340


>gi|302558031|ref|ZP_07310373.1| RecA protein [Streptomyces griseoflavus Tu4000]
 gi|302475649|gb|EFL38742.1| RecA protein [Streptomyces griseoflavus Tu4000]
          Length = 375

 Score =  393 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 216/350 (61%), Positives = 279/350 (79%), Gaps = 4/350 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           + M   D+ KAL+AAL+QI+R +GKGA+M++G +    E IEV+ +GS  LD+ALG+GG 
Sbjct: 2   EPMAGTDREKALDAALAQIERQFGKGAVMRMGERS--MEPIEVIPTGSTALDVALGVGGL 59

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GR+VEIYGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KLGVD+ NL++
Sbjct: 60  PRGRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLIL 119

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALR
Sbjct: 120 SQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 179

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           K+TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD   
Sbjct: 180 KITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTE 239

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
             GN+TR KVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G 
Sbjct: 240 AVGNRTRCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVENGFVRKAGAWYTYEGD 299

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           +LGQG+EN++ FL++N ++A  IE  +++  G+      +EPA     DA
Sbjct: 300 QLGQGKENARNFLKDNPDLANEIEKKIKEKLGVGVRP--EEPAAEPGADA 347


>gi|158318440|ref|YP_001510948.1| recombinase A [Frankia sp. EAN1pec]
 gi|158113845|gb|ABW16042.1| recA protein [Frankia sp. EAN1pec]
          Length = 345

 Score =  393 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 211/340 (62%), Positives = 265/340 (77%), Gaps = 2/340 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KALE AL+QI + +GKG+IM+LG    I   I+V+ +GS+ LD+ALGIGG P+
Sbjct: 1   MVGPDREKALENALAQIDKQFGKGSIMRLGDD--IRPPIQVIPTGSIALDVALGIGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA KLGVD   LL+SQ
Sbjct: 59  GRVVEIYGPESSGKTTVALHAVANAQTAGGIAAFIDAEHALDPEYAGKLGVDTDALLVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T +++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+S+RLD+RR+ ++KD     
Sbjct: 179 TGALANSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASIRLDVRRIETLKDGTEAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
            N+TRVKVVKNKMA PF+  EFDI+YG GIS  G LID+GV+ SI+ KSGAW+++ G +L
Sbjct: 239 ANRTRVKVVKNKMAPPFRTAEFDIVYGGGISREGSLIDMGVEHSIIRKSGAWYTYDGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           GQG+EN++ FLR+N ++A  IE  +++  GL        P
Sbjct: 299 GQGKENARSFLRDNPDLANEIEKRIKEKLGLSPTLDADAP 338


>gi|146341855|ref|YP_001206903.1| recombinase A [Bradyrhizobium sp. ORS278]
 gi|146194661|emb|CAL78686.1| Recombinase A (recA) [Bradyrhizobium sp. ORS278]
          Length = 362

 Score =  393 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 247/354 (69%), Positives = 301/354 (85%), Gaps = 1/354 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DKSKAL AALSQI+R +GKG++M+LG        +E VS+GSLGLDIALGIGG P
Sbjct: 10  EGSSMDKSKALSAALSQIERQFGKGSVMKLGKNDRSM-DVETVSTGSLGLDIALGIGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLIS
Sbjct: 69  KGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SI++S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D +
Sbjct: 189 LTASINKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN TRVKVVKNK+A PFKQVEFDIMYGEG+S  GE++DLGVKA IV+KSGAWFS+  QR
Sbjct: 249 IGNTTRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSYDSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           LGQGRENSK FL+ N ++   IE+ +RQN+GL+A+ +L   A    D  +  + 
Sbjct: 309 LGQGRENSKSFLKANPDMTAKIEAAIRQNSGLIAEQILAGAAERDADGEEPAEE 362


>gi|320008171|gb|ADW03021.1| recA protein [Streptomyces flavogriseus ATCC 33331]
          Length = 376

 Score =  393 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 210/331 (63%), Positives = 274/331 (82%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M+LG + +  E IEV+ +GS  LD+ALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE+YGPESSGKTTL LH +A +Q+ GG+ AF+DAEHALD  YA+KLGVD+ +L++SQ
Sbjct: 59  GRVVEVYGPESSGKTTLTLHAVANAQRLGGSVAFIDAEHALDPEYAKKLGVDIDSLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FL++N ++A  IE  + +  G+
Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKILEKLGV 329


>gi|257056758|ref|YP_003134590.1| protein RecA [Saccharomonospora viridis DSM 43017]
 gi|256586630|gb|ACU97763.1| protein RecA [Saccharomonospora viridis DSM 43017]
          Length = 345

 Score =  393 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 208/342 (60%), Positives = 266/342 (77%), Gaps = 2/342 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            DK KAL+ AL+QI + +GKG++M+LG +      +EV+ +G++ LDIALGIGG P+GRI
Sbjct: 5   PDKGKALDLALAQIDKQFGKGSVMRLGEESR--PPVEVIPTGAIALDIALGIGGLPRGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +QK GG  AF+DAEHALD  YA+ LGVD  +LL+SQPDT
Sbjct: 63  VEIYGPESSGKTTVALHAVANAQKAGGIAAFIDAEHALDPEYAKALGVDTDSLLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 123 GEQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +  S    +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+
Sbjct: 183 LHNSGTTAIFINQLREKVGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGGEPVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQ EFDI+YG G+S  G LID+GV   IV KSGAW++++G +LGQG
Sbjct: 243 TRVKVVKNKVAPPFKQAEFDILYGVGVSREGSLIDMGVDQGIVRKSGAWYTYEGDQLGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           +EN++ FLREN ++A  IE  +++  G+         +    
Sbjct: 303 KENARRFLRENPDVANEIEKKIKEKLGIGTQGSDDSASAPVD 344


>gi|302554574|ref|ZP_07306916.1| recA protein [Streptomyces viridochromogenes DSM 40736]
 gi|302472192|gb|EFL35285.1| recA protein [Streptomyces viridochromogenes DSM 40736]
          Length = 374

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 214/342 (62%), Positives = 277/342 (80%), Gaps = 4/342 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G + +  E IEV+S+GS  LD+ALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRMGDRTN--EPIEVISTGSTALDVALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 59  GRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTEAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR KVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV--ADSLLQEP 346
           GQG+EN++ FL++N ++A  IE  +++  G+    +    EP
Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKIKEKLGVGVRPEEPAAEP 340


>gi|75675472|ref|YP_317893.1| recombinase A [Nitrobacter winogradskyi Nb-255]
 gi|123745720|sp|Q3ST50|RECA_NITWN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|74420342|gb|ABA04541.1| RecA protein [Nitrobacter winogradskyi Nb-255]
          Length = 362

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 247/354 (69%), Positives = 303/354 (85%), Gaps = 2/354 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DKSKAL AALSQI+R +GKG++M+LG        +EV+SSGSLGLDIALG+GG P
Sbjct: 10  EGSSMDKSKALSAALSQIERQFGKGSVMKLGKNDKSM-DVEVISSGSLGLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVE+YGPESSGKTTLALH +A++QK GG CAF+DAEHALD +YARKLGV++ +LLIS
Sbjct: 69  KGRIVEVYGPESSGKTTLALHAVAEAQKKGGICAFIDAEHALDPVYARKLGVNVDDLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI D LVRSGAVD+++IDSVAAL PRAE+EG+MG++LPG+QARLMSQALRK
Sbjct: 129 QPDHGEQALEIADTLVRSGAVDVLIIDSVAALVPRAELEGEMGDALPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SI++S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D +
Sbjct: 189 LTASINKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYGEGIS  GE++DLGVKA IV+KSGAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGEGISKMGEILDLGVKAGIVEKSGAWFSYDSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ-EPAINTKDDADKDD 358
           +GQGREN+K FLR N +I   +E  +RQN+GL+A+ +L   P   T DD   +D
Sbjct: 309 MGQGRENAKAFLRANPDITAKVEMAIRQNSGLIAEQILAGSPERETDDDETAED 362


>gi|46200836|ref|ZP_00056375.2| COG0468: RecA/RadA recombinase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 351

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 242/341 (70%), Positives = 295/341 (86%), Gaps = 1/341 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           + + +D+ KALEAA+SQI+R +GKG+IM+LG +  + E  EVVS+GSLGLD+ALGIGG P
Sbjct: 2   DKDTMDRQKALEAAVSQIERAFGKGSIMKLGGKDQVVE-TEVVSTGSLGLDVALGIGGVP 60

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+E+YGPESSGKTTLALH IA++QK GGTCAFVDAEHALD  YARKLGV L  LLIS
Sbjct: 61  RGRIIEVYGPESSGKTTLALHIIAEAQKKGGTCAFVDAEHALDPSYARKLGVALDELLIS 120

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI D LVRSGAVD++V+DSVAAL PRAE+EG+MG++  G+ ARLMSQALRK
Sbjct: 121 QPDAGEQALEIADTLVRSGAVDVLVVDSVAALVPRAELEGEMGDNHMGLHARLMSQALRK 180

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT S+S+SK I++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR++IRRVG+IKD+D +
Sbjct: 181 LTGSVSKSKTIVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMEIRRVGAIKDRDEV 240

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFK V+FDIMYGEGIS  GELIDLGVKA++V+KSGAWFS+   R
Sbjct: 241 VGNQTRVKVVKNKLAPPFKVVDFDIMYGEGISKMGELIDLGVKANVVEKSGAWFSYNSTR 300

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           +GQGREN+K FLR+N  +A  IE  +RQNAGL++++L   P
Sbjct: 301 IGQGRENAKQFLRDNPAMAAEIEGAIRQNAGLISEALAAGP 341


>gi|27380866|ref|NP_772395.1| recombinase A [Bradyrhizobium japonicum USDA 110]
 gi|37537946|sp|Q89I84|RECA_BRAJA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|27354032|dbj|BAC51020.1| RecA protein [Bradyrhizobium japonicum USDA 110]
          Length = 362

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 246/354 (69%), Positives = 300/354 (84%), Gaps = 1/354 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DKSKAL AALSQI+R +GKG++M+LG        +E VSSGSLGLDIALGIGG P
Sbjct: 10  EGSSMDKSKALAAALSQIERQFGKGSVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLIS
Sbjct: 69  KGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SI++S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D +
Sbjct: 189 LTASINKSHTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN TRVKVVKNK+A PFKQVEFDIMYGEG+S  GE++DLGVKA IV+KSGAWFS+  QR
Sbjct: 249 VGNTTRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSYDSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           LGQGRENSK FL+ N +I   IE+ +RQN+GL+A+ +L        D  +  D 
Sbjct: 309 LGQGRENSKAFLKANPDITAKIETAIRQNSGLIAEQILAGTPERDADGEEPADE 362


>gi|90423078|ref|YP_531448.1| recombinase A [Rhodopseudomonas palustris BisB18]
 gi|90105092|gb|ABD87129.1| RecA protein [Rhodopseudomonas palustris BisB18]
          Length = 363

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 245/353 (69%), Positives = 302/353 (85%), Gaps = 4/353 (1%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DK+KAL AALSQI+R +GKG++M+LG        IE +SSGSLGLDIALG+GG P
Sbjct: 11  EGSSMDKTKALAAALSQIERQFGKGSVMKLGKNDRSM-DIETISSGSLGLDIALGVGGLP 69

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR+VEIYGPESSGKTTLALH  A++QK GG CAF+DAEHALD +YARKLGV++  LLIS
Sbjct: 70  KGRVVEIYGPESSGKTTLALHCAAEAQKKGGICAFIDAEHALDPVYARKLGVNVDELLIS 129

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI D LVRSGAVD++++DSVAAL PRAE+EG+MG++LPG+QARLMSQALRK
Sbjct: 130 QPDHGEQALEIADTLVRSGAVDVLIVDSVAALVPRAELEGEMGDALPGLQARLMSQALRK 189

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SI++S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G IK++D +
Sbjct: 190 LTASINKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGQIKERDEV 249

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYGEG+S  GE++DLGVKA IVDKSGAWFS+  QR
Sbjct: 250 VGNQTRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVDKSGAWFSYDSQR 309

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           LGQGRENSK FL+ N ++   IE+ +RQN+GL+A+ +L   A + + DAD ++
Sbjct: 310 LGQGRENSKAFLKANPDMTAKIEAAIRQNSGLIAEQIL---AGSPERDADGEE 359


>gi|170738641|ref|YP_001767296.1| recA protein [Methylobacterium sp. 4-46]
 gi|238688062|sp|B0UGP0|RECA_METS4 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|168192915|gb|ACA14862.1| recA protein [Methylobacterium sp. 4-46]
          Length = 363

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 253/349 (72%), Positives = 306/349 (87%), Gaps = 2/349 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKSKA++AAL+QI+R +GKG+IM+LG +G   + +E +S+GSLGLD+ALG+GG P+GR++
Sbjct: 17  DKSKAIDAALAQIERAFGKGSIMRLG-KGDKVQEVETISTGSLGLDVALGVGGLPRGRVI 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGV+L +LLISQPDTG
Sbjct: 76  EIYGPESSGKTTLALHTIAEAQKKGGVCAFVDAEHALDPVYARKLGVNLDDLLISQPDTG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+  PG+QARLMSQALRKLT SI
Sbjct: 136 EQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDQQPGLQARLMSQALRKLTGSI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SRS C+++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRRV ++KD+D   GN  
Sbjct: 196 SRSNCMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRVSTLKDRDEPIGNSV 255

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDIM+GEG+S  GELIDLGVKA IV+KSGAWFS+  QRLGQGR
Sbjct: 256 RVKVVKNKVAPPFKQVEFDIMFGEGVSKVGELIDLGVKAGIVEKSGAWFSYDSQRLGQGR 315

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           EN+K FLR+N +IA  IE+ +RQN GLVAD +L E A+ T +D D+ + 
Sbjct: 316 ENAKGFLRDNPDIAGRIEAAIRQNMGLVADKIL-ENAVPTAEDFDEGEA 363


>gi|330993236|ref|ZP_08317172.1| Protein recA [Gluconacetobacter sp. SXCC-1]
 gi|329759638|gb|EGG76146.1| Protein recA [Gluconacetobacter sp. SXCC-1]
          Length = 348

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 249/343 (72%), Positives = 299/343 (87%), Gaps = 2/343 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKALE ALSQI+R +GKG+IM++G + S  E ++V+S+GSLGLDIALGIGG P+GRI
Sbjct: 7   IDKSKALEGALSQIERAFGKGSIMRMGERPS--EQVDVISTGSLGLDIALGIGGLPRGRI 64

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH IA++Q+ GGTCAF+DAEHALD  YARKLGVD+ NLLISQPD 
Sbjct: 65  VEIYGPESSGKTTMALHAIAEAQRKGGTCAFIDAEHALDPGYARKLGVDVDNLLISQPDA 124

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT S
Sbjct: 125 GEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGS 184

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +SRS  +L+F+NQ+R+KIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDKD +TGNQ
Sbjct: 185 VSRSNTMLIFLNQIRLKIGVMFGSPETTTGGNALKFYASVRMDIRRIGSIKDKDEVTGNQ 244

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PF+QVEFDIMYGEGIS  GELIDLGVKA IV+KSGAWFS   QR+GQG
Sbjct: 245 TRVKVVKNKMAPPFRQVEFDIMYGEGISKVGELIDLGVKAGIVEKSGAWFSCDSQRIGQG 304

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           REN+K FLR++ E+A +IE  +R+ AG+VA+++L  P     +
Sbjct: 305 RENAKQFLRDHPEMAADIERRVREQAGVVAEAMLVGPDDEGGE 347


>gi|326443836|ref|ZP_08218570.1| recombinase A [Streptomyces clavuligerus ATCC 27064]
          Length = 374

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 213/354 (60%), Positives = 279/354 (78%), Gaps = 4/354 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G +    E IE++ +GS  LD+ALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRMGDRTQ--EPIEIIPTGSTALDVALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTTL LH +A +Q+ GG  AFVDAEHALD  YARKLGVD+ NL++SQ
Sbjct: 59  GRVVEIYGPESSGKTTLTLHAVANAQRAGGQVAFVDAEHALDPEYARKLGVDIDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTEAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR KVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++  +L
Sbjct: 239 GNRTRCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYESGQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV--ADSLLQEPAINTKDDADKDD 358
           GQG+EN++ FL++N ++A+ IE  ++   G+    ++   EP  +    A  D+
Sbjct: 299 GQGKENARNFLKDNPDLADEIEKKIKDKLGVGVRTEAPGAEPGPDAAGAAPGDE 352


>gi|220925348|ref|YP_002500650.1| recA protein [Methylobacterium nodulans ORS 2060]
 gi|254790438|sp|B8IP29|RECA_METNO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|219949955|gb|ACL60347.1| recA protein [Methylobacterium nodulans ORS 2060]
          Length = 363

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 254/346 (73%), Positives = 305/346 (88%), Gaps = 2/346 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKSKA++AAL+QI+R +GKG+IM+LG +G   + +E +S+GSLGLDIALG+GG P+GR++
Sbjct: 17  DKSKAIDAALAQIERAFGKGSIMRLG-KGDKVQEVETISTGSLGLDIALGVGGLPRGRVI 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGV+L +LLISQPDTG
Sbjct: 76  EIYGPESSGKTTLALHTIAEAQKKGGVCAFVDAEHALDPVYARKLGVNLDDLLISQPDTG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+  PG+QARLMSQALRKLT SI
Sbjct: 136 EQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDQQPGLQARLMSQALRKLTGSI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SRS C+++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRRV ++KD+D   GN  
Sbjct: 196 SRSNCMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRVSTLKDRDEPIGNSV 255

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDIM+GEG+S  GELIDLGVKA IV+KSGAWFS+  QRLGQGR
Sbjct: 256 RVKVVKNKVAPPFKQVEFDIMFGEGVSKVGELIDLGVKAGIVEKSGAWFSYDSQRLGQGR 315

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           EN+K FLR+N +IA  IE+ +RQN GLVAD +L E A+ T +D D+
Sbjct: 316 ENAKGFLRDNPDIAGRIEAAIRQNMGLVADKIL-ENAVPTAEDYDE 360


>gi|297191664|ref|ZP_06909062.1| recombinase A [Streptomyces pristinaespiralis ATCC 25486]
 gi|197721599|gb|EDY65507.1| recombinase A [Streptomyces pristinaespiralis ATCC 25486]
          Length = 375

 Score =  392 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 212/331 (64%), Positives = 274/331 (82%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M+LG + +  E IEV+ +GS  LD+ALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE+YGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 59  GRVVEVYGPESSGKTTLTLHAVANAQKAGGAVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FL++N ++A  IE  +++  G+
Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKIKEKLGV 329


>gi|85708968|ref|ZP_01040034.1| recombinase A [Erythrobacter sp. NAP1]
 gi|85690502|gb|EAQ30505.1| recombinase A [Erythrobacter sp. NAP1]
          Length = 354

 Score =  392 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 235/348 (67%), Positives = 295/348 (84%), Gaps = 3/348 (0%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
            KE + VD+ KAL+AAL+QI R +GKG+ M+LGS+ ++   +E +S+GSLGLDIALGIGG
Sbjct: 9   EKEKD-VDRQKALDAALAQIDRAFGKGSAMKLGSKEAM--QVESISTGSLGLDIALGIGG 65

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            PKGR++E+YGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+KLGVD+  L+
Sbjct: 66  LPKGRVIEVYGPESSGKTTLALHCIAEAQKAGGTAAFVDAEHALDPVYAKKLGVDIDELV 125

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPDTGEQALEITD LVRS AVD++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQ+L
Sbjct: 126 VSQPDTGEQALEITDTLVRSNAVDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQSL 185

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT SI+RSKC+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD+D
Sbjct: 186 RKLTGSINRSKCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDRD 245

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN TRVKVVKNK+A PFKQVEFDIMYGEGIS  GE++DLGVKA IV+KSG+W+S+  
Sbjct: 246 EVIGNSTRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGIVEKSGSWYSYDS 305

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
            R+GQGREN+K +L+EN E+ + +E+ +R     VA+ ++  P  +T 
Sbjct: 306 VRIGQGRENAKTYLKENPEVCDKLEAAIRGKTDEVAEEMMTGPDADTD 353


>gi|260427837|ref|ZP_05781816.1| protein RecA [Citreicella sp. SE45]
 gi|260422329|gb|EEX15580.1| protein RecA [Citreicella sp. SE45]
          Length = 359

 Score =  392 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 249/363 (68%), Positives = 293/363 (80%), Gaps = 13/363 (3%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD +K     D+ KAL++AL+QI+R +GKG+IM+LG   ++ + IE  S+GSLGLDIALG
Sbjct: 9   MDSKK---NADRQKALDSALAQIERQFGKGSIMKLGGDNAM-KDIEATSTGSLGLDIALG 64

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG PKGRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YA+KLGVDL 
Sbjct: 65  IGGLPKGRIIEIYGPESSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVDLD 124

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LLISQPDTGEQALEITD LVRSGAV ++V+DSVAALTP++E+EGDMG+S  G+ ARLMS
Sbjct: 125 ELLISQPDTGEQALEITDTLVRSGAVSLVVVDSVAALTPKSELEGDMGDSSVGVHARLMS 184

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKLT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIK
Sbjct: 185 QAMRKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIK 244

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D+D + GNQTRVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGVKA +VDKSGAW+S
Sbjct: 245 DRDEVVGNQTRVKVVKNKVAPPFKQVEFDIMYGEGISKTGELLDLGVKAGVVDKSGAWYS 304

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           +  +R+GQGREN+K FLREN   A  IE  +R   GL              +D   DD D
Sbjct: 305 YGDERIGQGRENAKTFLRENPRQAMEIEDKIRAAHGLDFHM---------SEDGRDDDGD 355

Query: 361 NVE 363
            +E
Sbjct: 356 VME 358


>gi|326776175|ref|ZP_08235440.1| recA protein [Streptomyces cf. griseus XylebKG-1]
 gi|326656508|gb|EGE41354.1| recA protein [Streptomyces cf. griseus XylebKG-1]
          Length = 374

 Score =  392 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 211/331 (63%), Positives = 274/331 (82%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M+LG + +  E IEV+ +GS  LD+ALG+GG P+
Sbjct: 1   MAGNDREKALDAALAQIERQFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD  YA+KLGVD+ +L++SQ
Sbjct: 59  GRVVEVYGPESSGKTTLTLHAVANAQKLGGSVAFIDAEHALDPEYAKKLGVDIDSLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FL++N ++A  IE  + +  G+
Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKILEKLGV 329


>gi|182435538|ref|YP_001823257.1| recombinase A [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178464054|dbj|BAG18574.1| putative RecA protein [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 376

 Score =  392 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 211/331 (63%), Positives = 274/331 (82%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M+LG + +  E IEV+ +GS  LD+ALG+GG P+
Sbjct: 1   MAGNDREKALDAALAQIERQFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD  YA+KLGVD+ +L++SQ
Sbjct: 59  GRVVEVYGPESSGKTTLTLHAVANAQKLGGSVAFIDAEHALDPEYAKKLGVDIDSLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FL++N ++A  IE  + +  G+
Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKILEKLGV 329


>gi|254470359|ref|ZP_05083763.1| protein RecA [Pseudovibrio sp. JE062]
 gi|211960670|gb|EEA95866.1| protein RecA [Pseudovibrio sp. JE062]
          Length = 354

 Score =  392 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 251/345 (72%), Positives = 300/345 (86%), Gaps = 2/345 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N +DK+KAL+AALSQI+R +GKG+IM++G   ++   I+ VS+GSL LDI LGIGG P
Sbjct: 10  EGNQMDKNKALDAALSQIERAFGKGSIMRMGQGQAV--EIQSVSTGSLSLDIGLGIGGLP 67

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRI+EIYGPESSGKTTLALHT+A +Q+ GG CAFVDAEHALD +YARKLGV++ +LLIS
Sbjct: 68  KGRIIEIYGPESSGKTTLALHTVASAQREGGICAFVDAEHALDPVYARKLGVNIDDLLIS 127

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI D LVRSGA+D++VIDSVAALTP+AE+EG+MG+SLPG+QARLMSQALRK
Sbjct: 128 QPDAGEQALEIADTLVRSGAIDVLVIDSVAALTPKAELEGEMGDSLPGLQARLMSQALRK 187

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SIS+S  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D I
Sbjct: 188 LTASISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDEI 247

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDI+YGEGIS  GEL+DLGVK  IV+KSGAWFS+  QR
Sbjct: 248 VGNQTRVKVVKNKLAPPFKQVEFDIIYGEGISKMGELLDLGVKGGIVEKSGAWFSYNSQR 307

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           LGQGRENSK FLREN E+AE IE  +RQNAGL+A+++        
Sbjct: 308 LGQGRENSKTFLRENPELAEEIELAIRQNAGLIAEAIDDPEKTAE 352


>gi|284047740|ref|YP_003398079.1| recA protein [Acidaminococcus fermentans DSM 20731]
 gi|283951961|gb|ADB46764.1| recA protein [Acidaminococcus fermentans DSM 20731]
          Length = 362

 Score =  391 bits (1005), Expect = e-107,   Method: Composition-based stats.
 Identities = 228/360 (63%), Positives = 285/360 (79%), Gaps = 8/360 (2%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K+KAL+AAL QI++ +GKG+IM+LG+  +    IE + +G+L LDIALG+GG P+GRI
Sbjct: 5   AEKNKALDAALKQIEKDFGKGSIMKLGAASAKMN-IETIPTGALSLDIALGVGGIPRGRI 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH IA++QK GG  AF+DAEHALD  YAR LGVD+ NLLISQPDT
Sbjct: 64  IEIYGPESSGKTTVALHMIAEAQKRGGYAAFIDAEHALDPEYARHLGVDIDNLLISQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+DIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  
Sbjct: 124 GEQALEICDALVRSGAIDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGV 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I++S+   VFINQ+R K+GVMFG+PE TTGG ALKFYS++R+D+RRV S+K  + I GN 
Sbjct: 184 IAKSRTATVFINQIREKVGVMFGNPEVTTGGRALKFYSTIRMDVRRVESLKSGNDIIGNH 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQ EFDIMYGEGIS  G L+DLGV+ +I++KSGAW+S+  QR+GQG
Sbjct: 244 TRVKVVKNKVAPPFKQAEFDIMYGEGISHEGCLVDLGVQYNILNKSGAWYSYGDQRIGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD------KDDTDNVE 363
           REN+K FL+E+ ++A  +E+ +R  AGL AD     P   T  + D      + D D+VE
Sbjct: 304 RENTKTFLKEHPDMAAEVEARIRAAAGLPADG-KPVPVQETAQEPDGLVMTPETDGDHVE 362


>gi|299131743|ref|ZP_07024938.1| recA protein [Afipia sp. 1NLS2]
 gi|298591880|gb|EFI52080.1| recA protein [Afipia sp. 1NLS2]
          Length = 360

 Score =  391 bits (1005), Expect = e-107,   Method: Composition-based stats.
 Identities = 243/339 (71%), Positives = 299/339 (88%), Gaps = 1/339 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   +DK+KAL AALSQI+R +GKG++M+LG +      IEV+SSGSLGLDIALG+GG P
Sbjct: 10  EGTSMDKTKALTAALSQIERQFGKGSVMRLG-KADRSMDIEVISSGSLGLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR+VEIYGPESSGKTTLALHT+A++QK GGTCAF+DAEHALD +YARKLGV++  LLIS
Sbjct: 69  KGRVVEIYGPESSGKTTLALHTVAEAQKKGGTCAFIDAEHALDPVYARKLGVNVDELLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI D LVRSGAVD++++DSVAAL PRAE+EG+MG++LPG+QARLMSQALRK
Sbjct: 129 QPDHGEQALEIADTLVRSGAVDVLIVDSVAALVPRAELEGEMGDALPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SI++S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D +
Sbjct: 189 LTASINKSHTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN TRVKVVKNK+A PFKQVEFDIMYGEG+S  GE++DLGVKA IV+KSGAWFS+  QR
Sbjct: 249 IGNSTRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSYDSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
           LGQGRENSK FLR+N ++   IE+ +RQN+GL+A+ +L 
Sbjct: 309 LGQGRENSKAFLRDNPDMTAKIEAAIRQNSGLIAEQILA 347


>gi|148256739|ref|YP_001241324.1| recombinase A [Bradyrhizobium sp. BTAi1]
 gi|146408912|gb|ABQ37418.1| RecA protein [Bradyrhizobium sp. BTAi1]
          Length = 362

 Score =  391 bits (1005), Expect = e-107,   Method: Composition-based stats.
 Identities = 244/354 (68%), Positives = 301/354 (85%), Gaps = 1/354 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DKSKAL AALSQI+R +GKG++M+LG        +E VS+GSLGLDIALGIGG P
Sbjct: 10  EGSSMDKSKALSAALSQIERQFGKGSVMKLGKNDRSM-DVETVSTGSLGLDIALGIGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR++EIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLIS
Sbjct: 69  KGRVIEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRK
Sbjct: 129 QPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SI++S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+S+RLDIRR+G+IK++D +
Sbjct: 189 LTASINKSHTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASIRLDIRRIGAIKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN TRVKVVKNK+A PFKQVEFDIMYGEG+S  GE++DLGVKA IV+KSGAWFS+  QR
Sbjct: 249 IGNTTRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSYDSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           LGQGRENSK FL+ N ++   IE+ +RQN+GL+A+ +L   A    D  +  + 
Sbjct: 309 LGQGRENSKSFLKANPDMTAKIEAAIRQNSGLIAEQILAGNAERDADGEEPAEE 362


>gi|62288901|sp|Q9XBC1|RECA_RHOPA RecName: Full=Protein RecA; AltName: Full=Recombinase A
          Length = 349

 Score =  391 bits (1004), Expect = e-107,   Method: Composition-based stats.
 Identities = 244/349 (69%), Positives = 301/349 (86%), Gaps = 4/349 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG        IE +SSGSLGLDIALG+GG PKGRI
Sbjct: 1   MDKSKALSAALSQIERQFGKGSVMRLGKNDRSM-DIETISSGSLGLDIALGVGGLPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH +A++QK GG CAFVDAEHALD +YARKLGV++ +LLISQPD 
Sbjct: 60  VEIYGPESSGKTTLALHCVAEAQKKGGICAFVDAEHALDPVYARKLGVNVDDLLISQPDH 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++++DSVAAL PRAE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 120 GEQALEIADTLVRSGAIDVLIVDSVAALVPRAELEGEMGDALPGLQARLMSQALRKLTAS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I++S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G IK++D + GNQ
Sbjct: 180 INKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGQIKERDEVVGNQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEG+S  GE++DLGVKA IV+KSGAWFS   QRLGQG
Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSHDSQRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           REN+K FL+ N ++   IE+ +RQN+GL+A+ +L   A + + DAD ++
Sbjct: 300 RENAKAFLKANPDMTAKIEAAIRQNSGLIAEQIL---AGSPESDADGEE 345


>gi|114569557|ref|YP_756237.1| recA protein [Maricaulis maris MCS10]
 gi|114340019|gb|ABI65299.1| RecA protein [Maricaulis maris MCS10]
          Length = 359

 Score =  391 bits (1004), Expect = e-107,   Method: Composition-based stats.
 Identities = 247/348 (70%), Positives = 302/348 (86%), Gaps = 2/348 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K    +DK KA+EAALSQI + +GKG++M+LG + ++   IE +S+GSLGLDIALGIGG 
Sbjct: 10  KNEKNMDKEKAIEAALSQIDKAFGKGSVMKLGQKPAM--EIETISTGSLGLDIALGIGGL 67

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EIYGPESSGKTTLALHT+A++QK GG  AFVDAEHALD +YA KLGVDL  LLI
Sbjct: 68  PKGRIIEIYGPESSGKTTLALHTVAEAQKAGGVAAFVDAEHALDPVYAGKLGVDLGELLI 127

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D LVRSGA+DI+VIDSVAALTPRAE+EG+MG+SLPG+QARLMSQALR
Sbjct: 128 SQPDTGEQALEIADTLVRSGAIDILVIDSVAALTPRAELEGEMGDSLPGLQARLMSQALR 187

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT SIS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IK++D 
Sbjct: 188 KLTGSISKSKCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKNRDE 247

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + GNQTRVKVVKNK+A PF++VEFDI+YGEGIS  GELIDLGVK  +++KSG+W+S+  +
Sbjct: 248 VIGNQTRVKVVKNKVAPPFREVEFDILYGEGISKMGELIDLGVKGDVIEKSGSWYSYNSE 307

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           R+GQGREN++ FL E+ +IA +IE+ +R NAGL+AD +L  P +   D
Sbjct: 308 RIGQGRENARQFLLEHGDIAADIEARVRSNAGLIADEMLTGPDLAEDD 355


>gi|282862279|ref|ZP_06271341.1| recA protein [Streptomyces sp. ACTE]
 gi|282562618|gb|EFB68158.1| recA protein [Streptomyces sp. ACTE]
          Length = 376

 Score =  391 bits (1004), Expect = e-107,   Method: Composition-based stats.
 Identities = 211/331 (63%), Positives = 274/331 (82%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M+LG + +  E IEV+ +GS  LD+ALG+GG P+
Sbjct: 1   MAGNDREKALDAALAQIERQFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD  YA+KLGVD+ +L++SQ
Sbjct: 59  GRVVEVYGPESSGKTTLTLHAVANAQKLGGSVAFIDAEHALDPEYAKKLGVDIDSLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FL++N ++A  IE  + +  G+
Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKILEKLGV 329


>gi|85374373|ref|YP_458435.1| recombinase A [Erythrobacter litoralis HTCC2594]
 gi|84787456|gb|ABC63638.1| recombinase A [Erythrobacter litoralis HTCC2594]
          Length = 352

 Score =  391 bits (1004), Expect = e-107,   Method: Composition-based stats.
 Identities = 235/345 (68%), Positives = 292/345 (84%), Gaps = 2/345 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           ++ N VD+ KAL+AAL+QI R +GKG+ M+LGS+ ++   +E +S+GSLGLDIALGIGG 
Sbjct: 9   EKENNVDRQKALDAALAQIDRAFGKGSAMKLGSKEAM--NVEAISTGSLGLDIALGIGGL 66

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGR++E+YGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+ LGVD+  L++
Sbjct: 67  PKGRVIEVYGPESSGKTTLALHAIAEAQKAGGTAAFVDAEHALDPVYAKALGVDIDELIV 126

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEITD LVRS AVDI+V+DSVAAL PRAEIEG+MG+S  G+QARLMSQ+LR
Sbjct: 127 SQPDTGEQALEITDTLVRSNAVDILVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQSLR 186

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT SI+RSKC+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD+D 
Sbjct: 187 KLTGSINRSKCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDRDE 246

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + GN TRVKVVKNK+A PFKQVEFDIMYGEGIS  GE++DLGVKA IV+KSG+WFS+   
Sbjct: 247 VVGNSTRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGIVEKSGSWFSYDSI 306

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
           R+GQGREN+K +L+EN EI + +E+ +R     VA+ ++  P   
Sbjct: 307 RIGQGRENAKTYLKENPEICDKLEAAIRGKTDEVAEEMMTGPDAE 351


>gi|316932870|ref|YP_004107852.1| recA protein [Rhodopseudomonas palustris DX-1]
 gi|315600584|gb|ADU43119.1| recA protein [Rhodopseudomonas palustris DX-1]
          Length = 363

 Score =  391 bits (1004), Expect = e-107,   Method: Composition-based stats.
 Identities = 244/354 (68%), Positives = 302/354 (85%), Gaps = 2/354 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DKSKAL AALSQI+R +GKG++M+LG      E IE +SSGSLGLDIALG+GG P
Sbjct: 11  EGSSMDKSKALSAALSQIERQFGKGSVMKLGKNDRAME-IETISSGSLGLDIALGVGGLP 69

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALH +A++QK GG CAF+DAEHALD +YARKLGV++ +LLIS
Sbjct: 70  KGRIVEIYGPESSGKTTLALHCVAEAQKKGGICAFIDAEHALDPVYARKLGVNVDDLLIS 129

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI D LVRSGA+D++++DSVAAL PRAE+EG+MG++LPG+QARLMSQALRK
Sbjct: 130 QPDHGEQALEIADTLVRSGAIDVLIVDSVAALVPRAELEGEMGDALPGLQARLMSQALRK 189

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SI++S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D +
Sbjct: 190 LTASINKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEV 249

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYGEG+S  GE++DLGVKA IV+KSGAWFS   QR
Sbjct: 250 VGNQTRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSHDSQR 309

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE-PAINTKDDADKDD 358
           LGQGREN+K FLR N ++   IE+ +RQN+GL+A+ +L   P  +   +   +D
Sbjct: 310 LGQGRENAKAFLRANPDMTAKIEAAIRQNSGLIAEQILAGLPERDADGEEPAED 363


>gi|330428558|gb|AEC19892.1| hypothetical protein PT7_1352 [Pusillimonas sp. T7-7]
          Length = 355

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 238/353 (67%), Positives = 293/353 (83%), Gaps = 1/353 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD +      ++SKAL AALSQI++ +GKG++M+ G   ++   I+VVS+GSLGLD+ALG
Sbjct: 1   MDDKNSKAAGERSKALAAALSQIEKQFGKGSVMRYGDD-TVEHDIQVVSTGSLGLDVALG 59

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGTCAF+DAEHALD  YA KLGV+L 
Sbjct: 60  VGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKIGGTCAFIDAEHALDVQYASKLGVNLA 119

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +LLISQPDTGEQALEITD LVRSG+VD+IVIDSVAAL P+AEIEGDMG+SLPG+QARLMS
Sbjct: 120 DLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPKAEIEGDMGDSLPGLQARLMS 179

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT++I R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIK
Sbjct: 180 QALRKLTANIKRANCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIK 239

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             D I GN+TRVKVVKNK+A PFKQ EFDIMYG GIS  GE+IDLGV+A IVDK+GAWFS
Sbjct: 240 KGDEIVGNETRVKVVKNKVAPPFKQAEFDIMYGGGISREGEIIDLGVQAGIVDKAGAWFS 299

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           + G R+GQG++NS+ +L+E+ E+A  IE+ +R+  G++      +    T D+
Sbjct: 300 YSGTRIGQGKDNSREYLKEHPEMAFEIENRVREQLGVIPQVAANKTVQTTDDE 352


>gi|85715199|ref|ZP_01046183.1| recombinase A [Nitrobacter sp. Nb-311A]
 gi|85698114|gb|EAQ35987.1| recombinase A [Nitrobacter sp. Nb-311A]
          Length = 362

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 248/354 (70%), Positives = 302/354 (85%), Gaps = 2/354 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DKSKAL AALSQI+R +GKG++M+LG        +EVVSSGSLGLDIALG+GG P
Sbjct: 10  EGSSMDKSKALSAALSQIERQFGKGSVMKLGKNDKSM-DVEVVSSGSLGLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVE+YGPESSGKTTLALH +A++QK GG CAF+DAEHALD +YARKLGV++ +LLIS
Sbjct: 69  KGRIVEVYGPESSGKTTLALHAVAEAQKKGGICAFIDAEHALDPVYARKLGVNVDDLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI D LVRSGAVD+++IDSVAAL PRAE+EG+MG++LPG+QARLMSQALRK
Sbjct: 129 QPDHGEQALEIADTLVRSGAVDVLIIDSVAALVPRAELEGEMGDALPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SI++S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D +
Sbjct: 189 LTASINKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYGEGIS  GE++DLGVKA IV+KSGAWFS+  QR
Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGEGISKMGEILDLGVKAGIVEKSGAWFSYDSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ-EPAINTKDDADKDD 358
           +GQGREN+K FLR N +I   +E  +RQN+GL+A+ +L   P   T DD    D
Sbjct: 309 MGQGRENAKAFLRANPDITAKVEMAIRQNSGLIAEQILAGSPERETDDDETAGD 362


>gi|84686865|ref|ZP_01014749.1| recombinase A [Maritimibacter alkaliphilus HTCC2654]
 gi|84665062|gb|EAQ11542.1| recombinase A [Rhodobacterales bacterium HTCC2654]
          Length = 361

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 246/354 (69%), Positives = 290/354 (81%), Gaps = 11/354 (3%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL++AL+QI+R +GKG+IM+LG+   + E I   S+GSLGLDIALGIGG PKGRI
Sbjct: 18  SEKQKALDSALAQIERQFGKGSIMKLGADNPVAE-IASTSTGSLGLDIALGIGGLPKGRI 76

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YA++LGVDL  LLISQPDT
Sbjct: 77  IEIYGPESSGKTTLTLHCVAEEQKKGGVCAFVDAEHALDPQYAKRLGVDLDELLISQPDT 136

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAV+++V+DSVAALTP++E+EGDMG+S  G+QARLMSQA+RKLT S
Sbjct: 137 GEQALEIVDTLVRSGAVNMVVVDSVAALTPKSELEGDMGDSSVGVQARLMSQAMRKLTGS 196

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I+RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D + GN 
Sbjct: 197 IARSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRDEVVGNA 256

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGVKA +V+KSGAWFS+  +R+GQG
Sbjct: 257 TRVKVVKNKVAPPFKQVEFDIMYGEGISKTGELLDLGVKAGVVEKSGAWFSYGDERIGQG 316

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           RENSK FL+EN  IA  IE  +R   GL  D             AD DD D VE
Sbjct: 317 RENSKTFLKENPSIALEIEDKIRAAHGLDFDM----------GGADFDDADVVE 360


>gi|111225078|ref|YP_715872.1| recombinase A [Frankia alni ACN14a]
 gi|123142675|sp|Q0RDW5|RECA_FRAAA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|111152610|emb|CAJ64351.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Frankia alni ACN14a]
          Length = 346

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 206/330 (62%), Positives = 266/330 (80%), Gaps = 2/330 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +D+ KAL+ AL+QI + +GKG++M+LG        I+ + +GS+ LD+ALGIGG PKGR+
Sbjct: 5   LDRDKALDNALAQIDKAFGKGSVMRLGDDTR--PPIQAIPTGSIALDVALGIGGLPKGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA KLGVD+ NLL+SQPDT
Sbjct: 63  IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAGKLGVDIDNLLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T++
Sbjct: 123 GEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTAA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+
Sbjct: 183 LANSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTEAVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PF+  EFDI+YG GIS  G LID+GV+  I+ KSGAW+++ G +LGQG
Sbjct: 243 TRVKVVKNKVAPPFRTAEFDIVYGGGISREGSLIDMGVEHGIIRKSGAWYTYDGDQLGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +EN++ FLR+N ++A  IE  +++  G++ 
Sbjct: 303 KENARSFLRDNPDLANEIEKKIKEKLGILP 332


>gi|288922647|ref|ZP_06416823.1| recA protein [Frankia sp. EUN1f]
 gi|288346005|gb|EFC80358.1| recA protein [Frankia sp. EUN1f]
          Length = 349

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 206/332 (62%), Positives = 262/332 (78%), Gaps = 2/332 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KALE AL+QI + +GKG++M+LG        I+ + +GS+ LD+ALGIGG P+
Sbjct: 1   MVGPDREKALENALAQIDKQFGKGSVMRLGDDTR--PPIQAIPTGSIALDVALGIGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVE+YGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA KLGVD   LL+SQ
Sbjct: 59  GRIVEVYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAGKLGVDTDALLVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T +++ S    +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     
Sbjct: 179 TGALANSGTTAIFINQLREKVGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGQEAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNKMA PF+  EFDI+YG GIS  G LID+GV+  I+ KSGAW+++ G +L
Sbjct: 239 GNRTRVKVVKNKMAPPFRTAEFDIVYGGGISREGSLIDMGVEHGIIRKSGAWYTYDGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338
           GQG+EN++ FLR+N ++A  IE  +++  G+ 
Sbjct: 299 GQGKENARSFLRDNPDLANEIEKRIKEKLGIT 330


>gi|229820934|ref|YP_002882460.1| recA protein [Beutenbergia cavernae DSM 12333]
 gi|229566847|gb|ACQ80698.1| recA protein [Beutenbergia cavernae DSM 12333]
          Length = 350

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 209/348 (60%), Positives = 269/348 (77%), Gaps = 2/348 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
            + DKSKALEAAL QI R +GKG++M+LG        +EV+ + S+ LD+ALGIGG P+G
Sbjct: 4   PVGDKSKALEAALGQIDRQFGKGSVMRLGDDTR--PPVEVIPTSSIALDVALGIGGLPRG 61

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R+VEIYGPESSGKTT+ALH +A +Q+ GG   F+DAEHALD  YA++LGVD   LL+SQP
Sbjct: 62  RVVEIYGPESSGKTTVALHAVANAQRLGGIAGFIDAEHALDPEYAKRLGVDTDALLVSQP 121

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI DML+RSGA+DI+VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T
Sbjct: 122 DTGEQALEIADMLIRSGALDIVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKIT 181

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++S S    +FINQ+R KIGV FGSPETT+GG ALKFY+SVRLD+RR+ ++K+     G
Sbjct: 182 GALSASGTTAIFINQLREKIGVFFGSPETTSGGKALKFYASVRLDVRRIETLKEGTDAVG 241

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+TRVKVVKNKMA PFKQ EFDI+YG GIS  G LIDLGV   IV KSGAW++++G +LG
Sbjct: 242 NRTRVKVVKNKMAPPFKQAEFDILYGHGISREGGLIDLGVDQGIVRKSGAWYTYEGDQLG 301

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           QG+EN++ FL++N E+A+ IE+ +++  G+          ++     D
Sbjct: 302 QGKENARKFLKDNPELADEIETRIKEKLGIGIKVPADASELDDVAPVD 349


>gi|256784806|ref|ZP_05523237.1| recombinase A [Streptomyces lividans TK24]
 gi|289768695|ref|ZP_06528073.1| RecA protein [Streptomyces lividans TK24]
 gi|1350565|sp|P48294|RECA_STRLI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|416193|emb|CAA53674.1| reca peptidase [Streptomyces lividans TK24]
 gi|289698894|gb|EFD66323.1| RecA protein [Streptomyces lividans TK24]
 gi|744164|prf||2014251A recA peptidase
          Length = 374

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 215/342 (62%), Positives = 277/342 (80%), Gaps = 4/342 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G + +  E IEV+ +GS  LD+ALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRMGDRTN--EPIEVIPTGSTALDVALGVGGIPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE+YGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 59  GRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVENGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV--ADSLLQEP 346
           GQG+EN++ FL++N ++A  IE  ++Q  G+    +    EP
Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKIKQKLGVGVHPEESATEP 340


>gi|227824639|ref|ZP_03989471.1| recA protein [Acidaminococcus sp. D21]
 gi|226905138|gb|EEH91056.1| recA protein [Acidaminococcus sp. D21]
          Length = 352

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 225/348 (64%), Positives = 278/348 (79%), Gaps = 1/348 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL+AA+ QI++ +GKG+IM+LG+  +    IE + +G+L LDIALG+GG P+GRI
Sbjct: 3   TEKGKALDAAVKQIEKDFGKGSIMKLGAASAKMN-IETIPTGALSLDIALGVGGIPRGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH IA++QK GG  AF+DAEHALD  YAR LGVD+ NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTVALHMIAEAQKRGGYAAFIDAEHALDPEYARHLGVDIDNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+DIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  
Sbjct: 122 GEQALEICDALVRSGAIDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGI 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S+   VFINQ+R K+GVMFG+PETTTGG ALKFYS+VR+D+RR+ S+K  + I GN+
Sbjct: 182 ISKSRTATVFINQIREKVGVMFGNPETTTGGRALKFYSTVRMDVRRIESLKSGNDIIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQ EFDIMYGEGIS  G L+DLGV  +IV KSGAW+S+  +R+GQG
Sbjct: 242 TRVKVVKNKVAPPFKQAEFDIMYGEGISHEGCLVDLGVLYNIVGKSGAWYSYGDERIGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           REN+K FL+ + E+A  IE+ +R+ AGL A     +     K + D D
Sbjct: 302 RENTKEFLKNHPEMAFEIENRIREAAGLTALEAAPQTEDILKPEGDPD 349


>gi|163852021|ref|YP_001640064.1| recA protein [Methylobacterium extorquens PA1]
 gi|218530775|ref|YP_002421591.1| recA protein [Methylobacterium chloromethanicum CM4]
 gi|240139288|ref|YP_002963763.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Methylobacterium extorquens AM1]
 gi|254561744|ref|YP_003068839.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Methylobacterium extorquens DM4]
 gi|163663626|gb|ABY30993.1| recA protein [Methylobacterium extorquens PA1]
 gi|218523078|gb|ACK83663.1| recA protein [Methylobacterium chloromethanicum CM4]
 gi|240009260|gb|ACS40486.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Methylobacterium extorquens AM1]
 gi|254269022|emb|CAX24983.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Methylobacterium extorquens DM4]
          Length = 366

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 259/349 (74%), Positives = 306/349 (87%), Gaps = 2/349 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKSKA+EAAL+QI+R +GKG+IM+LG +    + +E +S+GSLGLDIALG+GG P+GR+V
Sbjct: 20  DKSKAIEAALTQIERAFGKGSIMRLG-KSDKVQEVETISTGSLGLDIALGVGGLPRGRVV 78

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGV+L +LLISQPDTG
Sbjct: 79  EIYGPESSGKTTLALHTIAEAQKKGGVCAFVDAEHALDPVYARKLGVNLDDLLISQPDTG 138

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MGES PG+QARLMSQALRKLT SI
Sbjct: 139 EQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGESQPGLQARLMSQALRKLTGSI 198

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SRS C+++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRRV ++KD+D   GN  
Sbjct: 199 SRSNCMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRVSTLKDRDEAIGNSV 258

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDIM+GEG+S  GELIDLGVKA IV+KSGAWFS+  QRLGQGR
Sbjct: 259 RVKVVKNKVAPPFKQVEFDIMFGEGVSKVGELIDLGVKAGIVEKSGAWFSYDSQRLGQGR 318

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           ENSK FLR+N +IA  IE+ +RQN+GLVAD +L E A  T DD D+ + 
Sbjct: 319 ENSKGFLRDNPDIANKIEASIRQNSGLVADRIL-ETAKPTADDLDEGEA 366


>gi|254464079|ref|ZP_05077490.1| protein RecA [Rhodobacterales bacterium Y4I]
 gi|206684987|gb|EDZ45469.1| protein RecA [Rhodobacterales bacterium Y4I]
          Length = 355

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 249/349 (71%), Positives = 293/349 (83%), Gaps = 5/349 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K     DK KAL++AL+QI+R +GKG+IM+LG  G+  + IE  S+GSLGLDIALGIGG 
Sbjct: 8   KNKISGDKQKALDSALAQIERQFGKGSIMKLGD-GTALQEIEASSTGSLGLDIALGIGGL 66

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P GRIVEIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD  YA KLGVDL  LLI
Sbjct: 67  PMGRIVEIYGPESSGKTTLTLHCIAEQQKKGGVCAFVDAEHALDPQYAAKLGVDLDELLI 126

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEITD LVRSGAV+++++DSVAALTP++E+EGDMG+S  G+QARLMSQA+R
Sbjct: 127 SQPDTGEQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSSVGVQARLMSQAMR 186

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT SISRSKC+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIKD+D 
Sbjct: 187 KLTGSISRSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIKDRDE 246

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + GN TRVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGV A +V+KSGAWFS+  +
Sbjct: 247 VVGNSTRVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVAAGVVNKSGAWFSYGDE 306

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           R+GQGREN+K+FLREN  IA +IE  +R + GL      Q P +++ DD
Sbjct: 307 RIGQGRENAKVFLRENPSIAYDIEDKIRASHGLD----FQRPDLDSADD 351


>gi|134098318|ref|YP_001103979.1| DNA recombination/repair [Saccharopolyspora erythraea NRRL 2338]
 gi|291004262|ref|ZP_06562235.1| DNA recombination/repair [Saccharopolyspora erythraea NRRL 2338]
 gi|166220675|sp|A4FAH9|RECA_SACEN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|133910941|emb|CAM01054.1| DNA recombination/repair [Saccharopolyspora erythraea NRRL 2338]
          Length = 346

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 216/341 (63%), Positives = 275/341 (80%), Gaps = 4/341 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             DK KALE AL+QI + YGKG++M+LG +      IEV+ +GS+ LD+ALGIGG P+GR
Sbjct: 4   TPDKGKALELALAQIDKQYGKGSVMRLGDETRA--PIEVIPTGSISLDVALGIGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVE+YGPESSGKT++ALH +A +QK GGT AF+DAEHALD  YA+ +GVD  +LL+SQPD
Sbjct: 62  IVEVYGPESSGKTSVALHAVANAQKLGGTAAFIDAEHALDPEYAKAIGVDTDSLLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLTS
Sbjct: 122 TGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTS 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           ++  +K   +FINQ+R K+GVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD     GN
Sbjct: 182 ALYNAKTTAIFINQLREKVGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGSDAVGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFKQ EFDI+YG GIS  G LID+GV+  I+ KSGAW++++G +LGQ
Sbjct: 242 RTRVKVVKNKVAPPFKQAEFDIIYGIGISREGSLIDMGVEQGIIRKSGAWYTYEGDQLGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA--DSLLQEPA 347
           G+EN++ F+REN ++A  IE  +++  G+ A  D+   +PA
Sbjct: 302 GKENARKFMRENPDVANEIEKRIKEKLGIGAQVDAETADPA 342


>gi|254461098|ref|ZP_05074514.1| protein RecA [Rhodobacterales bacterium HTCC2083]
 gi|206677687|gb|EDZ42174.1| protein RecA [Rhodobacteraceae bacterium HTCC2083]
          Length = 351

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 247/349 (70%), Positives = 290/349 (83%), Gaps = 5/349 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
               DK KAL++AL+QI+R +GKG+IM+LG + ++ + IE  S+GSLGLDIALGIGG PK
Sbjct: 4   KATADKQKALDSALAQIERQFGKGSIMKLGDENAV-QQIEATSTGSLGLDIALGIGGLPK 62

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYGPESSGKTTL LHT+A+ QK GG CAFVDAEHALD  YA+KLGVDL  LLISQ
Sbjct: 63  GRIVEIYGPESSGKTTLTLHTVAEEQKKGGVCAFVDAEHALDPQYAKKLGVDLDELLISQ 122

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D LVRSGAV++IV+DSVAALTP++E+EGDMG+S  G+ ARLMSQA+RKL
Sbjct: 123 PDTGEQALEIVDTLVRSGAVNMIVVDSVAALTPKSELEGDMGDSSVGVHARLMSQAMRKL 182

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++KD+D + 
Sbjct: 183 TGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGALKDRDEVV 242

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN TRVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGVKA IVDKSG+WFS+  +R+
Sbjct: 243 GNATRVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVKAGIVDKSGSWFSYGDERI 302

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           GQGREN+K FL+EN  I+  IE  +R   GL  D     P    KDD D
Sbjct: 303 GQGRENAKTFLKENTRISYEIEDKIRAAHGLDFDM----PKEEQKDDDD 347


>gi|304321908|ref|YP_003855551.1| recombinase A [Parvularcula bermudensis HTCC2503]
 gi|303300810|gb|ADM10409.1| recombinase A [Parvularcula bermudensis HTCC2503]
          Length = 360

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 251/342 (73%), Positives = 299/342 (87%), Gaps = 1/342 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKALEAALSQI + +GKG++M+LGSQ  I + IE +S+GSLGLDIALGIGG PKGRI
Sbjct: 12  MDKSKALEAALSQIDKAFGKGSVMKLGSQDKIVQ-IEGISTGSLGLDIALGIGGLPKGRI 70

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH  A+SQK GGT AF+DAEHALD IYA KLGV L  LLISQPDT
Sbjct: 71  VEIYGPESSGKTTLALHCAAESQKAGGTAAFIDAEHALDPIYASKLGVKLDELLISQPDT 130

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++VIDSVAALTP+AE+EG+MG+SLPG+QARLMSQALRKLT S
Sbjct: 131 GEQALEIADTLVRSGAIDVLVIDSVAALTPKAELEGEMGDSLPGLQARLMSQALRKLTGS 190

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K +D + GNQ
Sbjct: 191 ISRSNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGALKARDEVIGNQ 250

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGV  +IV+KSG+W+S+  +R+GQG
Sbjct: 251 TRVKVVKNKVAPPFKQVEFDIMYGEGISKVGELLDLGVLGNIVEKSGSWYSYNSERIGQG 310

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           R+N+K FL++N +IA  IE  +R+NAGL+AD +L  P  N +
Sbjct: 311 RDNAKSFLKDNPDIAAAIEQAVRRNAGLIADDMLVGPKDNDE 352


>gi|260588139|ref|ZP_05854052.1| protein RecA [Blautia hansenii DSM 20583]
 gi|331082295|ref|ZP_08331421.1| recA [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260541666|gb|EEX22235.1| protein RecA [Blautia hansenii DSM 20583]
 gi|330400781|gb|EGG80382.1| recA [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 358

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 210/357 (58%), Positives = 278/357 (77%), Gaps = 1/357 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           +M   DK KAL+ AL+QI++ +GKG+IM+LG   +    +E V +G+L LDIALG+GG P
Sbjct: 3   QMVKEDKLKALDGALAQIEKQFGKGSIMKLGDSTANMN-VETVPTGALSLDIALGLGGVP 61

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRI+E+YGPESSGKTT+ALH +A+ QK GG   F+DAEHALD  YA+ +GVD+ NL IS
Sbjct: 62  KGRIIEVYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPAYAKNIGVDIDNLYIS 121

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEIT+ +VRSGAVDII++DSVAAL P+AEIEGDMG+S  G+QARLMSQALRK
Sbjct: 122 QPDNGEQALEITETMVRSGAVDIIIVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRK 181

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+ IS+S CI++FINQ+R K+GVMFG+PE TTGG ALKFYSS+R+D+RR+ ++K    +
Sbjct: 182 LTAHISKSNCIVIFINQLREKVGVMFGNPEVTTGGRALKFYSSIRMDVRRIETLKQGGEM 241

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+TR+KVVKNK+A PFK+ EFDIM+GEGIS  G+++DL     IV+KSGAW+++   +
Sbjct: 242 VGNRTRIKVVKNKIAPPFKEAEFDIMFGEGISKEGDILDLAANIGIVNKSGAWYAYNDGK 301

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           +GQGREN+K +L+EN EIAE IE  +R + GL+ D    E      +    ++T+ +
Sbjct: 302 IGQGRENAKKYLKENPEIAEEIEQKVRVHYGLLPDENGAEQPTPAGESTGNEETEEI 358


>gi|42416871|gb|AAS16317.1| RecA [Mycobacterium mageritense]
          Length = 349

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 207/331 (62%), Positives = 271/331 (81%), Gaps = 2/331 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 6   PDREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 64  VEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 124 GEQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+
Sbjct: 184 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG
Sbjct: 244 TRVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           +EN++ FL EN+++A  IE  +++  G+ AD
Sbjct: 304 KENARKFLLENVDVANEIEKKIKEKLGIGAD 334


>gi|296129392|ref|YP_003636642.1| recA protein [Cellulomonas flavigena DSM 20109]
 gi|296021207|gb|ADG74443.1| recA protein [Cellulomonas flavigena DSM 20109]
          Length = 346

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 210/343 (61%), Positives = 269/343 (78%), Gaps = 2/343 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+SKALEAALSQI R +GKG++M+LG +G     +EV+ +GS+ LD+ALGIGG P+GRI
Sbjct: 5   PDRSKALEAALSQIDRQFGKGSVMRLGDEGRA--PVEVIPTGSIALDVALGIGGLPRGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +E+YGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA+KLGVD   LL+SQPD 
Sbjct: 63  IEVYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQPDN 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D L+RSGA+DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 123 GEQALEIMDTLIRSGAIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+DIRR+ ++K+     GN+
Sbjct: 183 LNASGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRMDIRRIETLKEGTEPVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQ EFDI+YG GIS  G LID+GV+   V KSGAWF+++G +LGQG
Sbjct: 243 TRVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDMGVEHGFVRKSGAWFTYEGDQLGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           +EN++ FLR+N ++A  ++  +++  G+ A       A    D
Sbjct: 303 KENARKFLRDNPDLANELDKKIKEKLGIGAKVDAPADAPVPVD 345


>gi|224825851|ref|ZP_03698955.1| recA protein [Lutiella nitroferrum 2002]
 gi|224602075|gb|EEG08254.1| recA protein [Lutiella nitroferrum 2002]
          Length = 351

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 212/343 (61%), Positives = 281/343 (81%), Gaps = 1/343 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKS+AL AAL+QI++ +GKG+IM++     I E ++V+S+GSLGLD+ALG+GG P+GR+V
Sbjct: 7   DKSRALAAALAQIEKQFGKGSIMRMSDNQ-ITENLQVISTGSLGLDLALGVGGLPRGRVV 65

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  +A++QK GGTCA++DAE+ALD  YA+KLGV++++LLISQPDTG
Sbjct: 66  EIYGPESSGKTTLCLQVVAEAQKLGGTCAYIDAENALDPTYAQKLGVNVEDLLISQPDTG 125

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS  VD+IV+DSVAAL P+AEIEG+MG++  G+ ARLMSQALRKLT +I
Sbjct: 126 EQALEICDMLVRSSGVDVIVVDSVAALVPKAEIEGEMGDNHVGLHARLMSQALRKLTGNI 185

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G IK  + I GN+T
Sbjct: 186 KRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGGIKKGEEIIGNET 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF+Q  FDI+YGEGIS  GE+++LGV+   V+KSGAW+S+ GQ++GQG+
Sbjct: 246 RVKVVKNKVSPPFRQAGFDILYGEGISREGEIVELGVEHGFVEKSGAWYSYNGQKIGQGK 305

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           +N++++L++N  IA  IE  +R+  G+       +P      D
Sbjct: 306 DNTRLWLKDNPAIAREIEGKIREAVGINVAITEGQPEEEELAD 348


>gi|58039956|ref|YP_191920.1| recombinase A [Gluconobacter oxydans 621H]
 gi|61252238|sp|P48289|RECA_GLUOX RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|58002370|gb|AAW61264.1| RecA protein [Gluconobacter oxydans 621H]
          Length = 345

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 243/351 (69%), Positives = 298/351 (84%), Gaps = 6/351 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KALE ALSQI+R +GKG+IM++G +  +   +  +S+GS+GLDIALGIGG P+GRI
Sbjct: 1   MDKTKALEGALSQIERAFGKGSIMRMGQRPKVETNV--ISTGSIGLDIALGIGGMPRGRI 58

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH +A++QK GGT AF+DAEHALD  YARKLGV++ +LL+SQPD 
Sbjct: 59  VEIYGPESSGKTTLALHVLAEAQKKGGTVAFIDAEHALDPGYARKLGVNIDDLLLSQPDA 118

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT +
Sbjct: 119 GEQALEIADTLVRSGAVDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGT 178

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +SRS  +++F+NQ+RMKIGVMFG+PETTTGGNALKFYSS+RLDIRR+GSIKDKD + GNQ
Sbjct: 179 VSRSNTLVIFLNQIRMKIGVMFGNPETTTGGNALKFYSSIRLDIRRIGSIKDKDEVVGNQ 238

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PF+QVEFDIMYGEGIS  GEL+DLGVK +IV+KSGAWFSF  QR+GQG
Sbjct: 239 TRVKVVKNKMAPPFRQVEFDIMYGEGISKMGELLDLGVKGNIVEKSGAWFSFDSQRIGQG 298

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           REN+K FLRE+ E+A  IE  +R  AG+++D+L+ +P    + DAD    D
Sbjct: 299 RENAKQFLREHPEMASEIERRIRAEAGVLSDALMTDP----EPDADGTPED 345


>gi|149915204|ref|ZP_01903732.1| recombinase A [Roseobacter sp. AzwK-3b]
 gi|149810925|gb|EDM70764.1| recombinase A [Roseobacter sp. AzwK-3b]
          Length = 364

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 246/356 (69%), Positives = 292/356 (82%), Gaps = 4/356 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD +K     DK KALE+AL+QI+R +GKG+IM++GS   +   IE  S+GSLGLDIALG
Sbjct: 9   MDSKK---NADKQKALESALAQIERQFGKGSIMKMGSDNPVA-DIEATSTGSLGLDIALG 64

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG PKGRIVEIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD IYA+KLGVD+ 
Sbjct: 65  IGGLPKGRIVEIYGPESSGKTTLTLHCVAEEQKKGGVCAFVDAEHALDPIYAQKLGVDIN 124

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LLISQPDTGEQ+LEI D LVRSGAV +IV+DSVAALTP++E+EGDMG+S  G+QARLMS
Sbjct: 125 ELLISQPDTGEQSLEIVDTLVRSGAVSMIVVDSVAALTPKSELEGDMGDSNVGVQARLMS 184

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKLT SISRSKC ++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIK
Sbjct: 185 QAMRKLTGSISRSKCTVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIK 244

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D+D + GN TRVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGVKA +V+KSG+WFS
Sbjct: 245 DRDEVVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKTGELLDLGVKAGVVEKSGSWFS 304

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           +  +R+GQGREN+K FL++N + A +IE  +R + GL  D    +       + D 
Sbjct: 305 YGDERIGQGRENAKQFLKDNPKTAYSIEDKIRASHGLEFDMAEPDGGDRGGPEGDD 360


>gi|126737804|ref|ZP_01753534.1| recombinase A [Roseobacter sp. SK209-2-6]
 gi|126721197|gb|EBA17901.1| recombinase A [Roseobacter sp. SK209-2-6]
          Length = 355

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 246/349 (70%), Positives = 291/349 (83%), Gaps = 5/349 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K     DK KAL++AL+QI+R +GKG+IM+LG  G+  + IE  S+GSLGLDIALGIGG 
Sbjct: 8   KNKASGDKQKALDSALAQIERQFGKGSIMKLGD-GNAMQEIEASSTGSLGLDIALGIGGL 66

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P GRIVEIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD  YA KLGVDL  LLI
Sbjct: 67  PMGRIVEIYGPESSGKTTLTLHCIAEQQKKGGVCAFVDAEHALDPQYAAKLGVDLDELLI 126

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEITD LVRSGAV+++++DSVAALTP++E+EGDMG+S  G+QARLMSQA+R
Sbjct: 127 SQPDTGEQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSNVGVQARLMSQAMR 186

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT SI+RSKC+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D 
Sbjct: 187 KLTGSINRSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRDE 246

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + GNQTRVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGV A +V+KSGAWFS+  +
Sbjct: 247 VVGNQTRVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVAAGVVNKSGAWFSYGDE 306

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           R+GQGREN+K FLR++ E A +IE  +R   GL  D     P +  +DD
Sbjct: 307 RIGQGRENAKQFLRDHPETAFDIEDKIRAAHGLDFDR----PELGGEDD 351


>gi|21224115|ref|NP_629894.1| recombinase A [Streptomyces coelicolor A3(2)]
 gi|6225931|sp|O50487|RECA_STRCO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|2687334|emb|CAA15875.1| recombinase A [Streptomyces coelicolor A3(2)]
          Length = 374

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 215/342 (62%), Positives = 277/342 (80%), Gaps = 4/342 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G + +  E IEV+ +GS  LD+ALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRMGDRTN--EPIEVIPTGSTALDVALGVGGIPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE+YGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 59  GRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVENGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV--ADSLLQEP 346
           GQG+EN++ FL++N ++A  IE  ++Q  G+    +    EP
Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKIKQKLGVGVHPEESATEP 340


>gi|302525487|ref|ZP_07277829.1| recA protein [Streptomyces sp. AA4]
 gi|302434382|gb|EFL06198.1| recA protein [Streptomyces sp. AA4]
          Length = 347

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 209/344 (60%), Positives = 269/344 (78%), Gaps = 2/344 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            DK KALE AL+QI + YGKG++M+LG +      I V+ +G++ LD+ALGIGG P+GR+
Sbjct: 5   PDKDKALELALAQIDKQYGKGSVMRLGEESR--PPIAVIPTGAIALDVALGIGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA++LGVD   LL+SQPDT
Sbjct: 63  VEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPEYAKRLGVDTDALLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 123 GEQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +S S    +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+
Sbjct: 183 LSNSGTTAIFINQLREKVGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGGEPVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQ EFDI+YG G+S  G LID+GV   I+ KSGAW++++G +LGQG
Sbjct: 243 TRVKVVKNKVAPPFKQAEFDILYGMGVSREGSLIDMGVDQGILRKSGAWYTYEGDQLGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           +EN++ FLR+N +IA  IE  +++  G+      +  A+    D
Sbjct: 303 KENARRFLRDNPDIANEIEKRIKEKLGIGPQVDAEAEAVPAPVD 346


>gi|126729802|ref|ZP_01745615.1| recombinase A [Sagittula stellata E-37]
 gi|126709921|gb|EBA08974.1| recombinase A [Sagittula stellata E-37]
          Length = 349

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 245/337 (72%), Positives = 289/337 (85%), Gaps = 4/337 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD ++     DK KAL++AL+QI+R +GKG+IM+LG + +I + IE  S+GSLGLDIALG
Sbjct: 1   MDSKR---NADKQKALDSALAQIERQFGKGSIMKLGGENAI-KDIEATSTGSLGLDIALG 56

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG PKGRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YARKLGVDL 
Sbjct: 57  IGGLPKGRIIEIYGPESSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYARKLGVDLD 116

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LLISQPDTGEQALEITD LVRSGAV ++V+DSVAALTP++E+EGDMG+S  G+ ARLMS
Sbjct: 117 ELLISQPDTGEQALEITDTLVRSGAVSLVVVDSVAALTPKSELEGDMGDSSVGVHARLMS 176

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKLT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IK
Sbjct: 177 QAMRKLTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIK 236

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D+D + GNQTRVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGVKA +VDKSGAWFS
Sbjct: 237 DRDEVVGNQTRVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVKAGVVDKSGAWFS 296

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           +  +R+GQGREN+K +LREN  +A  IE  +R   GL
Sbjct: 297 YGDERIGQGRENAKNYLRENSRVALEIEDKIRAAHGL 333


>gi|297202809|ref|ZP_06920206.1| recombinase A [Streptomyces sviceus ATCC 29083]
 gi|297148206|gb|EFH28888.1| recombinase A [Streptomyces sviceus ATCC 29083]
          Length = 377

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 212/344 (61%), Positives = 278/344 (80%), Gaps = 4/344 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           + M   D+ KAL+AAL+QI+R +GKGA+M++G + +  E IEV+ +GS  LD+ALG+GG 
Sbjct: 2   EPMAGTDREKALDAALAQIERQFGKGAVMRMGERPN--EPIEVIPTGSTALDVALGVGGI 59

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GR+VE+YGPESSGKTTL LH +A +QK GG  AF+DAEHALD  YA+KLGVD+ NL++
Sbjct: 60  PRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFIDAEHALDPEYAKKLGVDIDNLIL 119

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALR
Sbjct: 120 SQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 179

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           K+TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD   
Sbjct: 180 KITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRMDIRRIETLKDGTD 239

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
             GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G 
Sbjct: 240 AVGNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVENGFVRKAGAWYTYEGD 299

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLV--ADSLLQEP 346
           +LGQG+EN++ FL++N ++A  IE  +++  G+    +    EP
Sbjct: 300 QLGQGKENARNFLKDNPDLANEIEKKIKEKLGVGVRPEQPAAEP 343


>gi|41408946|ref|NP_961782.1| recombinase A [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41397305|gb|AAS05165.1| RecA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 409

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 204/330 (61%), Positives = 269/330 (81%), Gaps = 2/330 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 64  PDREKALELAMAQIEKSYGKGSVMRLGDE--MRQPISVIPTGSIALDVALGIGGLPRGRV 121

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 122 VEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 181

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T +
Sbjct: 182 GEQALEIADMLIRSGALDILVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGA 241

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+
Sbjct: 242 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNR 301

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVK+VKNK++ PFKQ EFDI+YG GIS  G LID+GV    + KSG+WF+++G++LGQG
Sbjct: 302 TRVKIVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGSWFTYEGEQLGQG 361

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +EN++ FL EN E+A  IE  +++  G+ A
Sbjct: 362 KENARTFLMENDEVANEIEKKIKEKLGIGA 391


>gi|326387207|ref|ZP_08208817.1| recombinase A [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208388|gb|EGD59195.1| recombinase A [Novosphingobium nitrogenifigens DSM 19370]
          Length = 356

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 243/351 (69%), Positives = 296/351 (84%), Gaps = 7/351 (1%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
            KEM   D+ KAL+AAL+QI R +GKG++M+LG + ++   IE +SSGSLGLDIALGIGG
Sbjct: 13  EKEM---DRQKALDAALAQIDRAFGKGSVMKLGQKETM--QIEAISSGSLGLDIALGIGG 67

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P+GRIVEIYGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+KLGVD+ NL+
Sbjct: 68  LPRGRIVEIYGPESSGKTTLALHVIAEAQKAGGTAAFVDAEHALDPVYAKKLGVDIDNLI 127

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPDTGEQALEITD LVRS A+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQAL
Sbjct: 128 VSQPDTGEQALEITDTLVRSNAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQAL 187

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT SISRS+C+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD+D
Sbjct: 188 RKLTGSISRSRCLVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDRD 247

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            I GN TRVKVVKNK+A PFKQVEFDIMYGEGIS  GE++DLGVKA +V+KSGAWFS+  
Sbjct: 248 EIVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGLVEKSGAWFSYDS 307

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
            R+GQGREN+K +LR N E+   +E+ +R     VA+ ++  P  + +DDA
Sbjct: 308 IRIGQGRENAKNYLRNNPEVCNRLEAAIRSRTDQVAEGMMTGP--DAEDDA 356


>gi|114771070|ref|ZP_01448510.1| recombinase A [alpha proteobacterium HTCC2255]
 gi|114548352|gb|EAU51238.1| recombinase A [alpha proteobacterium HTCC2255]
          Length = 362

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 243/361 (67%), Positives = 291/361 (80%), Gaps = 10/361 (2%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           + +K M   DK KALE+AL QI+R +GKG+IM+LG + +    IE  S+GSLGLDIALGI
Sbjct: 9   NGKKSM---DKEKALESALGQIERQFGKGSIMKLGDESARL-DIEATSTGSLGLDIALGI 64

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG PKGRI+EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD  YA++LGVD+  
Sbjct: 65  GGLPKGRIIEIYGPESSGKTTLTLHAIAEEQKKGGVCAFVDAEHALDPTYAKRLGVDIDE 124

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLISQPD GEQALEITD LVRSGAV ++V+DSVAALTPRAE+EGDMG+   G QARLMSQ
Sbjct: 125 LLISQPDAGEQALEITDTLVRSGAVSMVVVDSVAALTPRAELEGDMGDHQVGAQARLMSQ 184

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKLT SI++S C+++FINQ+RMKIGVMFGSPETT+GGNALKFYSSVRLDIRR+G+IKD
Sbjct: 185 AMRKLTGSIAKSGCMVIFINQIRMKIGVMFGSPETTSGGNALKFYSSVRLDIRRIGAIKD 244

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
           +D I GN TRVKVVKNK++ PFKQVEFDIMYG+GIS  GELIDLGVK   V+KSG+WFS 
Sbjct: 245 RDEIVGNHTRVKVVKNKVSPPFKQVEFDIMYGQGISKRGELIDLGVKLGFVEKSGSWFSC 304

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
             +R+GQGREN+K +L++N ++A  IE  +R   GL  D L  E       DA +DD ++
Sbjct: 305 GDERIGQGRENAKTYLKDNPKMAYEIEDKIRAAHGLDFDDLPPE------SDAPEDDINS 358

Query: 362 V 362
           V
Sbjct: 359 V 359


>gi|94496514|ref|ZP_01303090.1| recA protein [Sphingomonas sp. SKA58]
 gi|94423874|gb|EAT08899.1| recA protein [Sphingomonas sp. SKA58]
          Length = 384

 Score =  389 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 242/351 (68%), Positives = 293/351 (83%), Gaps = 4/351 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K+   +D+ KAL+AAL+QI R +GKG+ M+LGS+  I   IE +S+GSLGLDIALGIGG 
Sbjct: 38  KKTGNMDRQKALDAALAQIDRAFGKGSAMKLGSREKI--EIESISTGSLGLDIALGIGGL 95

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EIYGPESSGKTTL LH IA++QK GGT AFVDAEHALD  YA+KLGVD+  L++
Sbjct: 96  PKGRIIEIYGPESSGKTTLTLHAIAEAQKAGGTAAFVDAEHALDPAYAKKLGVDIDELIV 155

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D LVRS A+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALR
Sbjct: 156 SQPDTGEQALEIVDTLVRSNAIDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 215

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT SISRSKC+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD+D 
Sbjct: 216 KLTGSISRSKCMVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDRDD 275

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           I GN TRVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+D+GVKA +V+KSGAWFS+   
Sbjct: 276 IVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKIGELLDIGVKAGLVEKSGAWFSYDSI 335

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           R+GQGREN+K +L+E+ E+A+ +E  +R     VAD ++  P  + +DD +
Sbjct: 336 RIGQGRENAKTYLKEHPELADRLEKAIRGKTEEVADGMMTGP--DAEDDGE 384


>gi|145590013|ref|YP_001156610.1| recA protein [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145048419|gb|ABP35046.1| RecA protein [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 363

 Score =  389 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 229/345 (66%), Positives = 289/345 (83%), Gaps = 1/345 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL AAL+QI++ +GKG+IM+LG    I + I+VVSSGSLGLDIALG+GG  +GR++
Sbjct: 20  DKQKALTAALAQIEKQFGKGSIMRLGD-AEISQDIQVVSSGSLGLDIALGVGGLARGRVI 78

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GGTCAF+DAEHALD  YA +LGVD+ NLLISQPDTG
Sbjct: 79  EIYGPESSGKTTLTLHAIAEMQKLGGTCAFIDAEHALDVQYASRLGVDVNNLLISQPDTG 138

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL PRAEIEGDMG+SLPG+QARLMSQALRKLT +I
Sbjct: 139 EQALEIADALVRSGSIDLIVIDSVAALVPRAEIEGDMGDSLPGLQARLMSQALRKLTGAI 198

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+   ++FINQ+RMKIGVMFGSPETTTGGNALKFY+S+RLDIRR+GSIK  D + GN+T
Sbjct: 199 KRTNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASMRLDIRRIGSIKKGDEVVGNET 258

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDIMYG GIS  GE+ID+GV+A IVDKSG+W+S+ G R+GQG+
Sbjct: 259 RVKVVKNKVSPPFREAIFDIMYGAGISREGEIIDMGVEADIVDKSGSWYSYNGDRIGQGK 318

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           +N + FL+EN  IA++IE+ +R+  G+ + S +    ++ +++ +
Sbjct: 319 DNVREFLKENPAIAKDIEAKIREKLGVKSGSAVVTDVLSEEEEVE 363


>gi|113866572|ref|YP_725061.1| recombinase A [Ralstonia eutropha H16]
 gi|123134402|sp|Q0KE78|RECA_CUPNH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|113525348|emb|CAJ91693.1| Recobination protein RecA [Ralstonia eutropha H16]
          Length = 354

 Score =  389 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 231/355 (65%), Positives = 293/355 (82%), Gaps = 3/355 (0%)

Query: 1   MDYRKEMN--IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIA 58
           MD +K       +K KAL AALSQI++ +GKG+IM+LG  G + + I+VVS+GSLGLDIA
Sbjct: 1   MDDKKAGAGVSAEKQKALAAALSQIEKQFGKGSIMRLGD-GEVEKDIQVVSTGSLGLDIA 59

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGTCAF+DAEHALD  YA KLGV+
Sbjct: 60  LGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVSYANKLGVN 119

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           + +LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARL
Sbjct: 120 VGDLLISQPDTGEQALEITDALVRSGSIDLIVIDSVAALVPKAEIEGEMGDSLPGLQARL 179

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRKLT +I R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS
Sbjct: 180 MSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGS 239

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IK  D + GN+T+VKVVKNK++ PF++  FDI+YG+GIS  GE+IDLGV A IV+KSGAW
Sbjct: 240 IKKGDDVIGNETKVKVVKNKVSPPFREAFFDILYGQGISRQGEIIDLGVDAKIVEKSGAW 299

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           +S+ G ++GQG++N++ +LREN +IA+ IE+ +R   G+VA +          +D
Sbjct: 300 YSYNGDKIGQGKDNAREYLRENPDIADEIENKVRAALGVVAMNPTAAATPVAVED 354


>gi|42416889|gb|AAS16326.1| RecA [Mycobacterium septicum]
          Length = 351

 Score =  389 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 208/341 (60%), Positives = 272/341 (79%), Gaps = 2/341 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 6   PDREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 64  VEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 124 GEQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R+KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+
Sbjct: 184 LNNSGTTAIFINQLRVKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG GIS  G LID+GV+   + KSG+WF+++G++LGQG
Sbjct: 244 TRVKVVKNKVSPPFKQAEFDILYGHGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           +EN++ FL ENI++A  IE  +++  G+ A    +  A   
Sbjct: 304 KENARKFLLENIDVANEIEKKIKEKLGIGAVVTAEAKADEV 344


>gi|207366352|emb|CAQ58071.1| recombinase A [Agrobacterium tumefaciens]
          Length = 322

 Score =  389 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 257/323 (79%), Positives = 295/323 (91%), Gaps = 1/323 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI+EIY
Sbjct: 1   KALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRIIEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGEQA
Sbjct: 60  GPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 LEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 179

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
           KC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQTRVK
Sbjct: 180 KCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQTRVK 239

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQGREN+
Sbjct: 240 VVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGRENA 299

Query: 314 KIFLRENIEIAENIESLLRQNAG 336
           KIFLR+N E A  IE  LRQNAG
Sbjct: 300 KIFLRDNPETANEIELALRQNAG 322


>gi|254512103|ref|ZP_05124170.1| protein RecA [Rhodobacteraceae bacterium KLH11]
 gi|221535814|gb|EEE38802.1| protein RecA [Rhodobacteraceae bacterium KLH11]
          Length = 354

 Score =  389 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 246/353 (69%), Positives = 291/353 (82%), Gaps = 11/353 (3%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           +    DK KAL++AL+QI+R +GKG+IM+LG      + IE  S+GSLGLDIALGIGG P
Sbjct: 9   DKKNADKQKALDSALAQIERQFGKGSIMKLGEDAK--QDIEASSTGSLGLDIALGIGGLP 66

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
            GRIVEIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD  YARKLGVDL  LLIS
Sbjct: 67  MGRIVEIYGPESSGKTTLTLHCIAEQQKRGGVCAFVDAEHALDPQYARKLGVDLDELLIS 126

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGAV+++V+DSVAALTP++E+EGDMG+S  G+QARLMSQA+RK
Sbjct: 127 QPDTGEQALEITDTLVRSGAVNMVVVDSVAALTPKSELEGDMGDSNVGVQARLMSQAMRK 186

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D +
Sbjct: 187 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRDEV 246

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGVKA +V+KSG+WFS+  +R
Sbjct: 247 VGNQTRVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVKAGVVEKSGSWFSYGDER 306

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           +GQGREN+K +LR+N  IA +IE  +R   GL  +            DA++DD
Sbjct: 307 IGQGRENAKQYLRDNARIALDIEDKIRAAHGLDFEM---------PPDAEEDD 350


>gi|296132793|ref|YP_003640040.1| recA protein [Thermincola sp. JR]
 gi|296031371|gb|ADG82139.1| recA protein [Thermincola potens JR]
          Length = 343

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 210/341 (61%), Positives = 276/341 (80%), Gaps = 1/341 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + DK KAL+ ALSQI++ +GKG+IM+LG   +    IEV+ +G+L LD+ALG+GG P+GR
Sbjct: 1   MSDKLKALDMALSQIEKQFGKGSIMKLGEASAKMN-IEVIPTGALALDVALGVGGVPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTT+ALH IA++QK GGT AF+DAEHALD  YARKLGVD+ NLL+SQPD
Sbjct: 60  VVEIYGPESSGKTTVALHIIAEAQKLGGTAAFIDAEHALDPYYARKLGVDIDNLLVSQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGA+D+IV+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKLT 
Sbjct: 120 TGEQALEIAEALVRSGAIDVIVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +IS+S+   +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+++R++ S+K    + G+
Sbjct: 180 AISKSRTTAIFINQIREKVGVMFGNPETTPGGRALKFYASVRMEVRKIESLKQGADVIGS 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFKQ +FDI YGEGIS  G +ID+    +I++KSGAW+S+K +RLGQ
Sbjct: 240 RTRVKVVKNKVAPPFKQADFDITYGEGISREGSIIDMATDLNILNKSGAWYSYKDERLGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
           GREN K +L+E+ EIA  IE  +R++ GL  +  + +  + 
Sbjct: 300 GRENVKEYLKEHPEIANEIEEKIRESLGLHKNPEVTDEGLE 340


>gi|253578515|ref|ZP_04855787.1| RecA protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850833|gb|EES78791.1| RecA protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 354

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 214/355 (60%), Positives = 280/355 (78%), Gaps = 3/355 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K KALEAAL QI++ YGKG++M+LG  G+  + +E V +GSL LDIALG+GG PK
Sbjct: 1   MINEEKQKALEAALGQIEKHYGKGSVMKLGESGANMQ-VETVPTGSLSLDIALGVGGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YA+ +GVD+ NL ISQ
Sbjct: 60  GRIIEIYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+GDMG+S  G+QARLMSQALRKL
Sbjct: 120 PDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+ IS+S C+++FINQ+R K+GVMFG+PETTTGG ALKFYSS+R+D+RRV ++K    + 
Sbjct: 180 TAVISKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYSSIRMDVRRVETLKQGGEMV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN TR+KVVKNK+A PFKQ EFDIM+G GIS  G+++DL  +  IV+KSGAW+++ G ++
Sbjct: 240 GNHTRIKVVKNKVAPPFKQAEFDIMFGTGISKEGDILDLAAECGIVNKSGAWYAYNGDKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSL--LQEPAINTKDDADKDDT 359
           GQGREN+KIFL+E+ +I + IE  +R +  L+ D     +EP   T D  D  + 
Sbjct: 300 GQGRENAKIFLKEHPDICDEIEKQVRIHYHLLPDEEGQAKEPVPATGDAPDASEE 354


>gi|312797180|ref|YP_004030102.1| RecA protein [Burkholderia rhizoxinica HKI 454]
 gi|312168955|emb|CBW75958.1| RecA protein [Burkholderia rhizoxinica HKI 454]
          Length = 376

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 229/331 (69%), Positives = 286/331 (86%), Gaps = 1/331 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AALSQI++ +GKG+IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 34  TAEKSKALAAALSQIEKQFGKGSIMRLG-HGEAVEDIQVVSTGSLGLDIALGVGGLPRGR 92

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGTCAF+DAEHALD  YA KLGV+   LLISQPD
Sbjct: 93  VVEIYGPESSGKTTLTLQVIAEMQKIGGTCAFIDAEHALDVQYASKLGVNASELLISQPD 152

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 153 TGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 212

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 213 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 272

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IV+K+GAW+S+ G+++GQ
Sbjct: 273 ETRVKVVKNKVSPPFREAIFDILYGEGISRHGEIIDLGVQAKIVEKAGAWYSYNGEKIGQ 332

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           G++N++ FLREN ++A  IE+ +R++ G+VA
Sbjct: 333 GKDNAREFLRENPDLAREIENRVRESLGVVA 363


>gi|225174587|ref|ZP_03728585.1| recA protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169714|gb|EEG78510.1| recA protein [Dethiobacter alkaliphilus AHT 1]
          Length = 552

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 207/338 (61%), Positives = 270/338 (79%), Gaps = 1/338 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N+++K KALE AL QI++ +GKG+IM+LG  G     + V+ +GSL LD+ALG+GGFP+G
Sbjct: 211 NMMEKQKALEMALMQIEKQFGKGSIMKLGDSGGRMN-LSVIPTGSLALDVALGVGGFPRG 269

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R++EIYGPESSGKTT+ALH IA++QK+GG  AF+DAEHALD +YA++LGV++  LL+SQP
Sbjct: 270 RVIEIYGPESSGKTTVALHAIAEAQKSGGFAAFIDAEHALDPVYAQRLGVNIDELLVSQP 329

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI + LVRSGA+D++V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+
Sbjct: 330 DTGEQALEIAESLVRSGAIDVVVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLS 389

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            +IS+S    +FINQ+R K+GVMFG+PE T GG ALKFY+SVR+D+RR  ++K  +   G
Sbjct: 390 GAISKSHTTAIFINQIREKVGVMFGNPEVTPGGRALKFYASVRIDVRRTETLKQGNEAVG 449

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+TR KV+KNK+A PFKQ EFDI+YGEGIS  G L+DLG    +V KSGAWFSF   RLG
Sbjct: 450 NRTRAKVLKNKVAPPFKQAEFDIVYGEGISREGTLLDLGCDMDLVQKSGAWFSFGDDRLG 509

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           QGREN++ FL+EN +IA  IE  +R+  GL   ++  E
Sbjct: 510 QGRENARQFLKENPDIALTIERKIREAYGLPTVAVEAE 547


>gi|291548053|emb|CBL21161.1| protein RecA [Ruminococcus sp. SR1/5]
          Length = 350

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 213/351 (60%), Positives = 277/351 (78%), Gaps = 1/351 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K KALEAAL  I++ +GKG++M+LG   S  + +E V +G L LDIALG+GG PK
Sbjct: 1   MISEEKQKALEAALGNIEKQFGKGSVMKLGDSSSHMQ-VEAVPTGCLSLDIALGVGGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YA+ +GVD+ NL ISQ
Sbjct: 60  GRIVEIYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKSIGVDIDNLYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL
Sbjct: 120 PDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+ IS+S C+++FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+D+RRV ++K    + 
Sbjct: 180 TAVISKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASVRMDVRRVETLKQGGEMV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN TRVKVVKNK+A PFKQ EFDIM+G GIS  G+++DL  + SIV+KSGAW++++G ++
Sbjct: 240 GNHTRVKVVKNKVAPPFKQAEFDIMFGTGISREGDILDLAAECSIVNKSGAWYAYEGDKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           GQGREN+K+FLRE+ EI + IE  +R +  L       E A+  +D   ++
Sbjct: 300 GQGRENAKLFLREHPEIRDEIEKKVRVHYHLDPADETAEAAVQAEDTEKEE 350


>gi|311898726|dbj|BAJ31134.1| putative protein RecA [Kitasatospora setae KM-6054]
          Length = 368

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 211/333 (63%), Positives = 273/333 (81%), Gaps = 2/333 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KALEAAL+QI+R +GKG++M+LG + +  E +EV+S+GS  LD+ALG+GG P+
Sbjct: 1   MAGTDREKALEAALAQIERQFGKGSVMRLGEKAN--EPVEVISTGSTALDVALGVGGIPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTTL LH  A +QK GGT AFVDAEHALD  YA+KLGVD   LL+SQ
Sbjct: 59  GRVVEIYGPESSGKTTLTLHLAANAQKAGGTVAFVDAEHALDPEYAKKLGVDTDALLVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEITDML+RSGA+D+++IDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDTGEQALEITDMLIRSGAIDLVIIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
             ++++S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     
Sbjct: 179 AGALNQSNTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTEAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A+PFKQ EFDI+YG GIS  G LID+GV+   + KSGAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAAPFKQAEFDILYGVGISREGGLIDMGVEHGFIRKSGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           GQG+EN++ FL++N ++A+ IE+ ++   G+  
Sbjct: 299 GQGKENARNFLKDNPQLADEIEAKIKGKLGIGP 331


>gi|42416873|gb|AAS16318.1| RecA [Mycobacterium fortuitum]
 gi|65306701|gb|AAY41903.1| RecA [Mycobacterium conceptionense]
          Length = 351

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 207/341 (60%), Positives = 273/341 (80%), Gaps = 2/341 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 6   PDREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 64  VEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 124 GEQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+
Sbjct: 184 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG
Sbjct: 244 TRVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           +EN++ FL EN+++A  IE  +++  G+ A    +  A + 
Sbjct: 304 KENARKFLLENVDVANEIEKKIKEKLGIGAVVTAEAKADDV 344


>gi|331698363|ref|YP_004334602.1| protein recA [Pseudonocardia dioxanivorans CB1190]
 gi|326953052|gb|AEA26749.1| Protein recA [Pseudonocardia dioxanivorans CB1190]
          Length = 347

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 211/348 (60%), Positives = 273/348 (78%), Gaps = 4/348 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KALE AL+QI++ +GKG++M+LG        I V+ +GS+ LD+ALG+GG P+
Sbjct: 1   MTAPDREKALELALAQIEKNHGKGSVMRLGDDTR--PPIGVIPTGSIALDVALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTT+ALH +A +Q +GG  AF+DAEHALD  YA+ LGVD   LL+SQ
Sbjct: 59  GRVVEIYGPESSGKTTVALHAVASAQASGGIAAFIDAEHALDPEYAKALGVDTDALLVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T ++S S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD   + 
Sbjct: 179 TGALSNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDIRRIETLKDGTDMV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G++TRVKVVKNK+A PFKQ EFD++YG GIS  G LID+GV+  I+ KSGAW++++G ++
Sbjct: 239 GSRTRVKVVKNKVAPPFKQAEFDVLYGVGISREGSLIDVGVEQGIIRKSGAWYTYEGDQM 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA--DSLLQEPAINTKD 352
           GQG+EN++ FL+EN +IA  +E  +++  G+ A  D+   EP     D
Sbjct: 299 GQGKENARKFLKENPDIAAEVEKRIKEKLGIGAVLDADEVEPLPAPVD 346


>gi|188581876|ref|YP_001925321.1| recA protein [Methylobacterium populi BJ001]
 gi|179345374|gb|ACB80786.1| recA protein [Methylobacterium populi BJ001]
          Length = 366

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 258/349 (73%), Positives = 306/349 (87%), Gaps = 2/349 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKSKA+EAAL+QI+R +GKG+IM+LG +    + +E VS+GSLGLDIALG+GG P+GR++
Sbjct: 20  DKSKAIEAALTQIERAFGKGSIMRLG-KTDKVQEVETVSTGSLGLDIALGVGGLPRGRVI 78

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGV+L +LLISQPDTG
Sbjct: 79  EIYGPESSGKTTLALHTIAEAQKKGGVCAFVDAEHALDPVYARKLGVNLDDLLISQPDTG 138

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MGES PG+QARLMSQALRKLT SI
Sbjct: 139 EQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGESQPGLQARLMSQALRKLTGSI 198

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SRS C+++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRRV ++KD+D   GN  
Sbjct: 199 SRSNCMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRVSTLKDRDEAIGNSV 258

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDIM+GEG+S  GELIDLGVKA IV+KSGAWFS+  QRLGQGR
Sbjct: 259 RVKVVKNKVAPPFKQVEFDIMFGEGVSKVGELIDLGVKAGIVEKSGAWFSYDSQRLGQGR 318

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           ENSK FLR+N +IA  IE+ +RQN+GLVAD +L E A  T +D D+ + 
Sbjct: 319 ENSKGFLRDNPDIANKIEASIRQNSGLVADRIL-ENAKPTAEDLDEGEA 366


>gi|332185210|ref|ZP_08386959.1| protein RecA [Sphingomonas sp. S17]
 gi|332014934|gb|EGI56990.1| protein RecA [Sphingomonas sp. S17]
          Length = 346

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 231/345 (66%), Positives = 294/345 (85%), Gaps = 4/345 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+ KAL+AAL+QI R +GKG+ M+LG + ++   +E +S+GSLGLDIALG+GG P+GR
Sbjct: 5   NADRQKALDAALAQIDRAFGKGSAMKLGQKETM--QVEAISTGSLGLDIALGVGGLPRGR 62

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++E+YGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+KLGV++  L++SQPD
Sbjct: 63  VIEVYGPESSGKTTLALHVIAEAQKMGGTAAFVDAEHALDPVYAKKLGVNIDELIVSQPD 122

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRS A+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQ+LRKLT 
Sbjct: 123 TGEQALEITDTLVRSNAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQSLRKLTG 182

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           SISRS+C+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD++ ITGN
Sbjct: 183 SISRSRCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDREDITGN 242

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
            TRVKVVKNK+A PFKQVEFDIMYGEGIS  GE++DLGVKA +V+KSG+WFS+   R+GQ
Sbjct: 243 TTRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGLVEKSGSWFSYDSVRIGQ 302

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           GREN+K +LREN ++A+ +E  +RQ    VA+ ++  P  + +DD
Sbjct: 303 GRENAKNYLRENPDMADRLERAIRQRTEQVAEEMMTGP--DAEDD 345


>gi|226939722|ref|YP_002794795.1| recombinase A [Laribacter hongkongensis HLHK9]
 gi|254790435|sp|C1D4J2|RECA_LARHH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226714648|gb|ACO73786.1| RecA [Laribacter hongkongensis HLHK9]
          Length = 354

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 219/354 (61%), Positives = 286/354 (80%), Gaps = 1/354 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   DK KAL AALSQI++ +GKG+IM++     + + ++V+S+GSLGLD+ALG+GG P+
Sbjct: 1   MAETDKQKALSAALSQIEKQFGKGSIMRMNE-TQVNDNLQVISTGSLGLDMALGVGGLPR 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTTL L  +A++QK GGTCA++DAE+ALD +YA KLGV + +LL+SQ
Sbjct: 60  GRVVEIYGPESSGKTTLCLQVVAEAQKLGGTCAYIDAENALDPVYAGKLGVKVDDLLVSQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI DMLVRSG VD+IV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL
Sbjct: 120 PDTGEQALEICDMLVRSGGVDVIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T +I R+  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK  D I 
Sbjct: 180 TGNIKRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKKTDEII 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK++ PFKQ EFDI+YGEGIS  GE+I++GV    VDKSGAW+++ GQ++
Sbjct: 240 GNETRVKVVKNKVSPPFKQAEFDILYGEGISREGEIIEMGVANKFVDKSGAWYAYNGQKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           GQG++N++ +LREN  IA+ IE  +R  AG+   +     +    + +  +D D
Sbjct: 300 GQGKDNAREWLRENPAIAQEIEKKIRTAAGVGGMNEFVPSSEEQAEASLSEDHD 353


>gi|294677288|ref|YP_003577903.1| RecA protein [Rhodobacter capsulatus SB 1003]
 gi|294476108|gb|ADE85496.1| RecA protein [Rhodobacter capsulatus SB 1003]
          Length = 355

 Score =  388 bits (996), Expect = e-106,   Method: Composition-based stats.
 Identities = 238/333 (71%), Positives = 282/333 (84%), Gaps = 1/333 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
            +    DK KALE+AL+QI+R +GKG+IM+LG      E IE  S+GSLGLDIALGIGG 
Sbjct: 10  NDKGKADKQKALESALAQIERQFGKGSIMKLGGDTPPPE-IEATSTGSLGLDIALGIGGL 68

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRIVEIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD  YA+KLGV L++LLI
Sbjct: 69  PKGRIVEIYGPESSGKTTLTLHCIAEEQKKGGVCAFVDAEHALDPYYAKKLGVSLEDLLI 128

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D LVRSGAV ++V+DSVAALTP+AEIEGDMG++  G QARLMSQA+R
Sbjct: 129 SQPDTGEQALEIVDTLVRSGAVSLVVVDSVAALTPKAEIEGDMGDATVGAQARLMSQAMR 188

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT+SI RS C+++FINQ+RMKIGVMFGSPETT+GGNALKFY+SVRLDIRR G+IKD+D 
Sbjct: 189 KLTASIGRSNCMVIFINQIRMKIGVMFGSPETTSGGNALKFYASVRLDIRRTGAIKDRDE 248

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + GNQTRVKVVKNK+A PF++VEFDI+YGEGIS  GEL+DLGVKA +V KSGAW+S+  +
Sbjct: 249 VIGNQTRVKVVKNKVAPPFREVEFDILYGEGISKVGELVDLGVKAGVVAKSGAWYSYGDE 308

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           R+GQGREN+K FLR+N +IA  IE  +R + GL
Sbjct: 309 RIGQGRENAKQFLRDNPDIAYEIEDKIRASHGL 341


>gi|42416897|gb|AAS16330.1| RecA [Mycobacterium neworleansense]
          Length = 351

 Score =  388 bits (996), Expect = e-106,   Method: Composition-based stats.
 Identities = 206/330 (62%), Positives = 269/330 (81%), Gaps = 2/330 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 6   PDREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 64  VEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 124 GEQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+
Sbjct: 184 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG GIS  G LID+GV+   + KSG+WF+++G++LGQG
Sbjct: 244 TRVKVVKNKVSPPFKQAEFDILYGHGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +EN++ FL EN+++A  IE  +++  G+ A
Sbjct: 304 KENARKFLLENVDVANEIEKKIKEKLGIGA 333


>gi|118472151|ref|YP_887057.1| recombinase A [Mycobacterium smegmatis str. MC2 155]
 gi|2500086|sp|Q59560|RECA_MYCS2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|34811308|pdb|1UBC|A Chain A, Structure Of Reca Protein
 gi|34811309|pdb|1UBE|A Chain A, Msreca-Adp Complex
 gi|34811310|pdb|1UBF|A Chain A, Msreca-Atpgs Complex
 gi|34811311|pdb|1UBG|A Chain A, Msreca-Datp Complex
 gi|109157789|pdb|2G88|A Chain A, Msreca-Datp Complex
 gi|150261332|pdb|2ODN|A Chain A, Msreca-Datp Complex
 gi|150261333|pdb|2ODW|A Chain A, Msreca-Atp-Gama-S Complex
 gi|150261334|pdb|2OE2|A Chain A, Msreca-Native-Low Humidity 95%
 gi|150261335|pdb|2OEP|A Chain A, Msreca-Adp-Complex
 gi|150261336|pdb|2OES|A Chain A, Msreca-Native-Ssb
 gi|150261337|pdb|2OFO|A Chain A, Msreca-Native
 gi|217035314|pdb|2ZR7|A Chain A, Msreca Native Form Ii'
 gi|217035328|pdb|2ZRM|A Chain A, Msreca Datp Form Iv
 gi|217035329|pdb|2ZRN|A Chain A, Msreca Form Iv
 gi|217035330|pdb|2ZRO|A Chain A, Msreca Adp Form Iv
 gi|217035331|pdb|2ZRP|A Chain A, Msreca Datp Form Ii'
 gi|1430892|emb|CAA67597.1| RecA protein [Mycobacterium smegmatis str. MC2 155]
 gi|42416901|gb|AAS16332.1| RecA [Mycobacterium smegmatis]
 gi|118173438|gb|ABK74334.1| protein RecA [Mycobacterium smegmatis str. MC2 155]
          Length = 349

 Score =  388 bits (996), Expect = e-106,   Method: Composition-based stats.
 Identities = 209/344 (60%), Positives = 273/344 (79%), Gaps = 8/344 (2%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 6   PDREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 64  IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 124 GEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+
Sbjct: 184 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG
Sbjct: 244 TRVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLV------ADSLLQEPA 347
           +EN++ FL EN ++A  IE  +++  G+       AD +L  P 
Sbjct: 304 KENARKFLLENTDVANEIEKKIKEKLGIGAVVTAEADDVLPAPV 347


>gi|326330053|ref|ZP_08196367.1| protein RecA [Nocardioidaceae bacterium Broad-1]
 gi|325952261|gb|EGD44287.1| protein RecA [Nocardioidaceae bacterium Broad-1]
          Length = 349

 Score =  388 bits (996), Expect = e-106,   Method: Composition-based stats.
 Identities = 208/333 (62%), Positives = 273/333 (81%), Gaps = 2/333 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+ I+R +GKG++M+LG +      +EV+ +GS+ LD+ALG+GG P+
Sbjct: 1   MAAGDREKALDAALANIERQFGKGSVMRLGDETRA--PLEVIPTGSIALDVALGLGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTT+ALH++A +Q+ GG  AF+DAEHALD  YA+ LGVD   LL+SQ
Sbjct: 59  GRVVEIYGPESSGKTTVALHSVASAQRAGGIVAFIDAEHALDPEYAKNLGVDTDALLVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+GEQALEI DML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDSGEQALEIADMLIRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKM 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS+++ S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD   + 
Sbjct: 179 TSALNNSGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRIETLKDGTDMV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDIMYG+GIS  G LID+GV+A +V K+GAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDIMYGKGISREGGLIDVGVEAGLVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           GQG+ENS+ FL++N ++A  +E  + +  G+V 
Sbjct: 299 GQGKENSRNFLKDNPDLANELEKRILEKLGVVP 331


>gi|169630143|ref|YP_001703792.1| RecA protein [Mycobacterium abscessus ATCC 19977]
 gi|226723635|sp|B1MD17|RECA_MYCA9 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|42416881|gb|AAS16322.1| RecA [Mycobacterium abscessus]
 gi|50897989|gb|AAT86004.1| RecA [Mycobacterium massiliense]
 gi|65306695|gb|AAY41900.1| RecA [Mycobacterium bolletii]
 gi|169242110|emb|CAM63138.1| RecA protein [Mycobacterium abscessus]
          Length = 346

 Score =  388 bits (996), Expect = e-106,   Method: Composition-based stats.
 Identities = 209/343 (60%), Positives = 273/343 (79%), Gaps = 2/343 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE AL+QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 5   PDREKALELALAQIDKSFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 63  IEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 123 GEQALEIADMLVRSGAIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD     GN+
Sbjct: 183 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG
Sbjct: 243 TRVKVVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           +EN++ FL EN+++A  IE  +++  G+ A     E      D
Sbjct: 303 KENARNFLLENVDVANEIEKKIKEKLGIGAVLTDDEVVPAPVD 345


>gi|84500803|ref|ZP_00999038.1| recombinase A [Oceanicola batsensis HTCC2597]
 gi|84390870|gb|EAQ03288.1| recombinase A [Oceanicola batsensis HTCC2597]
          Length = 359

 Score =  388 bits (996), Expect = e-106,   Method: Composition-based stats.
 Identities = 245/354 (69%), Positives = 295/354 (83%), Gaps = 6/354 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD +++ N   K KAL++AL+QI+R +GKG+IM+LG     F  IE  S+GSLGLDIALG
Sbjct: 9   MDSKRDAN---KQKALDSALAQIERQFGKGSIMKLGGDNP-FRDIEATSTGSLGLDIALG 64

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG PKGRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YARKLGVDL 
Sbjct: 65  IGGLPKGRIIEIYGPESSGKTTLTLHCVAEEQKKGGVCAFVDAEHALDPQYARKLGVDLD 124

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LLISQPDTGEQALEITD LVRSGAV ++++DSVAALTP++E+EGDMG+S  G+ ARLMS
Sbjct: 125 ELLISQPDTGEQALEITDTLVRSGAVSMVIVDSVAALTPKSELEGDMGDSSVGVHARLMS 184

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKLT SI+RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IK
Sbjct: 185 QAMRKLTGSIARSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIK 244

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           ++D + GNQTRVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGVKA +V+KSG+W+S
Sbjct: 245 ERDEVVGNQTRVKVVKNKVAPPFKQVEFDIMYGEGISKTGELLDLGVKAGVVEKSGSWYS 304

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           +  +R+GQGREN+K+FLREN EIA  IE  +R   GL  D  ++    ++ DD 
Sbjct: 305 YGDERIGQGRENAKVFLRENGEIAYAIEDKIRAAHGL--DFGIEGEGGDSADDV 356


>gi|83944500|ref|ZP_00956953.1| recombinase A [Sulfitobacter sp. EE-36]
 gi|83844702|gb|EAP82586.1| recombinase A [Sulfitobacter sp. EE-36]
          Length = 356

 Score =  388 bits (996), Expect = e-106,   Method: Composition-based stats.
 Identities = 246/363 (67%), Positives = 300/363 (82%), Gaps = 16/363 (4%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD +K+    +K KAL++AL+QI+R +GKG+IM+LG++G+I + I+  S+GSLGLDIALG
Sbjct: 9   MDNKKQ---AEKQKALDSALAQIERQFGKGSIMKLGAEGAI-QDIKASSTGSLGLDIALG 64

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG P GRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YARKLGVD+ 
Sbjct: 65  IGGLPMGRIIEIYGPESSGKTTLTLHCVAEQQKNGGVCAFVDAEHALDPQYARKLGVDID 124

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LLISQPDTGEQALEITD LVRSGAV+++V+DSVAALTP++E+EGDMG+S  G+QARLMS
Sbjct: 125 ELLISQPDTGEQALEITDTLVRSGAVNMVVVDSVAALTPKSELEGDMGDSSVGVQARLMS 184

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKLT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++K
Sbjct: 185 QAMRKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGALK 244

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D+D + GN TRVK+VKNK+A+PFKQVEFDIMYGEGIS  GEL+DLGVKA +VDKSG+WFS
Sbjct: 245 DRDEVVGNATRVKIVKNKVAAPFKQVEFDIMYGEGISKMGELLDLGVKAGVVDKSGSWFS 304

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           +  +R+GQGREN+K FL+EN  +A  IE  +R   GL  D             +D DD D
Sbjct: 305 YGDERIGQGRENAKTFLKENTAMANEIEDKIRAAHGLDFDG------------SDSDDAD 352

Query: 361 NVE 363
            +E
Sbjct: 353 ILE 355


>gi|83951872|ref|ZP_00960604.1| recombinase A [Roseovarius nubinhibens ISM]
 gi|83836878|gb|EAP76175.1| recombinase A [Roseovarius nubinhibens ISM]
          Length = 352

 Score =  388 bits (996), Expect = e-106,   Method: Composition-based stats.
 Identities = 247/352 (70%), Positives = 291/352 (82%), Gaps = 4/352 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD ++     DK KAL++AL+QI+R +GKG+IM+LG+   + E IE  S+GSLGLDIALG
Sbjct: 1   MDSKR---NPDKQKALDSALAQIERQFGKGSIMKLGADNPVQE-IEATSTGSLGLDIALG 56

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG PKGRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD IYARKLGVDL 
Sbjct: 57  IGGLPKGRIIEIYGPESSGKTTLTLHCVAEEQKKGGVCAFVDAEHALDPIYARKLGVDLD 116

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LLISQPDTGEQALEI D LVRSGAV ++V+DSVAALTP++E+EGDMG+S  G+QARLMS
Sbjct: 117 ELLISQPDTGEQALEIVDTLVRSGAVSMVVVDSVAALTPKSELEGDMGDSNVGVQARLMS 176

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKLT SISRSKC ++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++K
Sbjct: 177 QAMRKLTGSISRSKCTVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGALK 236

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D+D + GN TRVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGVKA +V+KSG+WFS
Sbjct: 237 DRDEVVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVKAGVVEKSGSWFS 296

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           +  +R+GQGREN+K FL+EN  IA  IE  +R   GL  D    E   +  D
Sbjct: 297 YGDERIGQGRENAKTFLKENSAIALAIEDKIRAAHGLEFDMPEIEKQGDEDD 348


>gi|1172889|sp|P42447|RECA_RHOCA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|558631|emb|CAA57673.1| recA [Rhodobacter capsulatus]
 gi|1581748|prf||2117248A recA gene
          Length = 355

 Score =  388 bits (996), Expect = e-106,   Method: Composition-based stats.
 Identities = 238/333 (71%), Positives = 281/333 (84%), Gaps = 1/333 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
            +    DK KALE AL+QI+R +GKG+IM+LG      E IE  S+GSLGLDIALGIGG 
Sbjct: 10  NDKGKADKQKALECALAQIERQFGKGSIMKLGGDTPPPE-IEATSTGSLGLDIALGIGGL 68

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRIVEIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD  YA+KLGV L++LLI
Sbjct: 69  PKGRIVEIYGPESSGKTTLTLHCIAEEQKKGGVCAFVDAEHALDPYYAKKLGVSLEDLLI 128

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D LVRSGAV ++V+DSVAALTP+AEIEGDMG++  G QARLMSQA+R
Sbjct: 129 SQPDTGEQALEIVDTLVRSGAVSLVVVDSVAALTPKAEIEGDMGDATVGAQARLMSQAMR 188

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT+SI RS C+++FINQ+RMKIGVMFGSPETT+GGNALKFY+SVRLDIRR G+IKD+D 
Sbjct: 189 KLTASIGRSNCMVIFINQIRMKIGVMFGSPETTSGGNALKFYASVRLDIRRTGAIKDRDE 248

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + GNQTRVKVVKNK+A PF++VEFDI+YGEGIS  GEL+DLGVKA +V KSGAW+S+  +
Sbjct: 249 VIGNQTRVKVVKNKVAPPFREVEFDILYGEGISKVGELVDLGVKAGVVAKSGAWYSYGDE 308

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           R+GQGREN+K FLR+N +IA  IE  +R + GL
Sbjct: 309 RIGQGRENAKQFLRDNPDIAYEIEDKIRASHGL 341


>gi|240145640|ref|ZP_04744241.1| protein RecA [Roseburia intestinalis L1-82]
 gi|257202261|gb|EEV00546.1| protein RecA [Roseburia intestinalis L1-82]
 gi|291536384|emb|CBL09496.1| protein RecA [Roseburia intestinalis M50/1]
 gi|291538746|emb|CBL11857.1| protein RecA [Roseburia intestinalis XB6B4]
          Length = 387

 Score =  388 bits (995), Expect = e-106,   Method: Composition-based stats.
 Identities = 208/340 (61%), Positives = 275/340 (80%), Gaps = 3/340 (0%)

Query: 2   DYRKEMNIV--DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIAL 59
           D  KE+N V  DK KAL+AA+SQI++ YGKG+IM+LG   +    +E + +GSL LDIAL
Sbjct: 5   DKYKEINAVKNDKLKALDAAISQIEKQYGKGSIMKLGDNSAHMN-VETIPTGSLSLDIAL 63

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           G+GG PKGRI+EIYGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YA+ +GVD+
Sbjct: 64  GLGGLPKGRIIEIYGPESSGKTTVALHAVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDI 123

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
            NL ISQPD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+GDMG+S  G+QARLM
Sbjct: 124 DNLYISQPDCGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGDMGDSHVGLQARLM 183

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           SQALRKLTS IS+S C+++FINQ+R K+GVMFG+PETTTGG ALKFYSSVR+D+RR+ ++
Sbjct: 184 SQALRKLTSVISKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRMDVRRIEAL 243

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           K    + GN+TRVK+VKNK+A PF++ EFDIM+G+GIS  G+++DL     +V+KSGAW+
Sbjct: 244 KQGGEVVGNRTRVKIVKNKVAPPFREAEFDIMFGQGISREGDILDLAADKGVVNKSGAWY 303

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           ++ G ++GQGREN+K +L+EN  I E IE+ +R+   +  
Sbjct: 304 AYNGDKIGQGRENAKQYLKENPLICEEIEAKVREMLNVDG 343


>gi|259419113|ref|ZP_05743030.1| protein RecA [Silicibacter sp. TrichCH4B]
 gi|259345335|gb|EEW57189.1| protein RecA [Silicibacter sp. TrichCH4B]
          Length = 357

 Score =  388 bits (995), Expect = e-106,   Method: Composition-based stats.
 Identities = 247/351 (70%), Positives = 289/351 (82%), Gaps = 5/351 (1%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           + +    DK KAL++AL+QI+R +GKG+IM+LG  G+  + IE  S+GSLGLDIALGIGG
Sbjct: 8   KDDKKSGDKQKALDSALAQIERQFGKGSIMKLGD-GTALQEIEASSTGSLGLDIALGIGG 66

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P GRIVEIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD  YA+KLGVDL  LL
Sbjct: 67  LPMGRIVEIYGPESSGKTTLTLHCIAEQQKKGGVCAFVDAEHALDPQYAKKLGVDLDELL 126

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           ISQPDTGEQALEITD LVRSGAV+++++DSVAALTP++E+EGDMG+S  G+QARLMSQA+
Sbjct: 127 ISQPDTGEQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSNVGVQARLMSQAM 186

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT SISRSKC+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIKD+D
Sbjct: 187 RKLTGSISRSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIKDRD 246

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN TRVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGV A +V+KSGAWFS+  
Sbjct: 247 EVVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVAAGVVNKSGAWFSYGD 306

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           +R+GQGREN+K +LREN  IA  IE  +R   GL  D     P     DD 
Sbjct: 307 ERIGQGRENAKTYLRENSRIALEIEDKIRAAHGLDFDM----PPEAQDDDV 353


>gi|42416895|gb|AAS16329.1| RecA [Mycobacterium porcinum]
          Length = 351

 Score =  388 bits (995), Expect = e-106,   Method: Composition-based stats.
 Identities = 207/341 (60%), Positives = 272/341 (79%), Gaps = 2/341 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 6   PDREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 64  VEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 124 GEQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+
Sbjct: 184 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG
Sbjct: 244 TRVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           +EN++ FL EN+++A  IE  +++  G+ A    +  A   
Sbjct: 304 KENARKFLLENVDVANEIEKKIKEKLGIGAVVTAEAKADEV 344


>gi|317125294|ref|YP_004099406.1| recA protein [Intrasporangium calvum DSM 43043]
 gi|315589382|gb|ADU48679.1| recA protein [Intrasporangium calvum DSM 43043]
          Length = 347

 Score =  388 bits (995), Expect = e-106,   Method: Composition-based stats.
 Identities = 208/343 (60%), Positives = 270/343 (78%), Gaps = 2/343 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + DK KAL + + QI++ +GKGA+M+LG    +   IEV+ +GS+ LD+ALGIGG P+GR
Sbjct: 4   VQDKDKALSSVMGQIEKNFGKGAVMRLGDD--VRAPIEVIPTGSIALDVALGIGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTT+ALH +A +QK GG  AF+DAEHALD  YA++LGVD   LL+SQPD
Sbjct: 62  VVEIYGPESSGKTTVALHAVANAQKAGGIAAFIDAEHALDPDYAQRLGVDTDALLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT 
Sbjct: 122 TGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN
Sbjct: 182 ALNSTGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTEPVGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFKQ EFDI+YG GIS  G +ID+GV+   V K+GAW++++G +LGQ
Sbjct: 242 RTRVKVVKNKVAPPFKQAEFDILYGLGISREGGIIDMGVEHGFVRKAGAWYTYEGDQLGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           G+EN++ FLR+N ++A+ IE  +++  G+      Q  A +  
Sbjct: 302 GKENARNFLRDNPDLADEIEKKVKEKLGVGPRVDKQADAADVP 344


>gi|296282672|ref|ZP_06860670.1| recombinase A [Citromicrobium bathyomarinum JL354]
          Length = 354

 Score =  388 bits (995), Expect = e-106,   Method: Composition-based stats.
 Identities = 236/347 (68%), Positives = 293/347 (84%), Gaps = 3/347 (0%)

Query: 3   YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
             KE N VD+ KAL+AAL+QI R +GKG+ M+LGS+ ++   +E +S+GSLGLDIALGIG
Sbjct: 10  DDKETN-VDRQKALDAALAQIDRAFGKGSAMKLGSKETM--NVESISTGSLGLDIALGIG 66

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G PKGR++E+YGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+KLGVD+  L
Sbjct: 67  GLPKGRVIEVYGPESSGKTTLALHVIAEAQKAGGTAAFVDAEHALDPVYAKKLGVDIDEL 126

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           ++SQPDTGEQALEITD LVRS A+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQ+
Sbjct: 127 IVSQPDTGEQALEITDTLVRSNAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQS 186

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           LRKLT SI+RSKC+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD+
Sbjct: 187 LRKLTGSINRSKCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDR 246

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           D I GN TRVKVVKNK+A PFKQVEFDIMYG+GIS  GE++DLGVKA +V+KSG+WFS+ 
Sbjct: 247 DEIIGNSTRVKVVKNKVAPPFKQVEFDIMYGQGISKIGEILDLGVKAGVVEKSGSWFSYD 306

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
             R+GQGREN+K FL+EN EI + +E+ +R     VA+ ++  P   
Sbjct: 307 SIRIGQGRENAKTFLKENPEICDKLEAAIRGKTDDVAEEMMVGPDAE 353


>gi|87199296|ref|YP_496553.1| recombinase A [Novosphingobium aromaticivorans DSM 12444]
 gi|87134977|gb|ABD25719.1| recA protein [Novosphingobium aromaticivorans DSM 12444]
          Length = 356

 Score =  388 bits (995), Expect = e-106,   Method: Composition-based stats.
 Identities = 243/348 (69%), Positives = 294/348 (84%), Gaps = 8/348 (2%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +D+ KAL+AAL+QI R +GKG+ M+LGS+ ++   +E VS+GSLGLDIALGIGG P+GRI
Sbjct: 16  MDRQKALDAALAQIDRAFGKGSAMRLGSKEAM--QVEAVSTGSLGLDIALGIGGLPRGRI 73

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALH IA++QK GGT AF+DAEHALD +YARKLGVD+ NL++SQPDT
Sbjct: 74  IEIYGPESSGKTTLALHAIAEAQKGGGTAAFIDAEHALDPVYARKLGVDIDNLIVSQPDT 133

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRS A+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT S
Sbjct: 134 GEQALEITDTLVRSNAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGS 193

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ISRS+C+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD+D I GN 
Sbjct: 194 ISRSRCMVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDRDEIVGNA 253

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEGIS  GE++DLGVKA +V+KSGAWFS+   R+GQG
Sbjct: 254 TRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGLVEKSGAWFSYDSIRIGQG 313

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           REN+K FLREN E+   +E+ +R     VA+ L+  P      DAD D
Sbjct: 314 RENAKNFLRENPEVCSRLEAAIRGRTDQVAEGLMAGP------DADDD 355


>gi|149202695|ref|ZP_01879667.1| recombinase A [Roseovarius sp. TM1035]
 gi|149143977|gb|EDM32011.1| recombinase A [Roseovarius sp. TM1035]
          Length = 357

 Score =  388 bits (995), Expect = e-106,   Method: Composition-based stats.
 Identities = 243/359 (67%), Positives = 291/359 (81%), Gaps = 10/359 (2%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD ++     DK KAL++AL+QI+R +GKG+IM+LG   ++ + IE  S+GSLGLDIALG
Sbjct: 9   MDNKR---NADKQKALDSALAQIERQFGKGSIMKLGGDNAV-KDIEATSTGSLGLDIALG 64

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG PKGRIVEIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD +YARKLGVDL 
Sbjct: 65  IGGIPKGRIVEIYGPESSGKTTLTLHCVAEEQKKGGVCAFVDAEHALDPVYARKLGVDLD 124

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LLISQPDTGEQALEI D LVRSGAV +IV+DSVAALTP++E+EG+MG+S  G+ ARLMS
Sbjct: 125 ELLISQPDTGEQALEIVDTLVRSGAVSMIVVDSVAALTPKSELEGEMGDSSVGVHARLMS 184

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKLT SISR+ C ++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIK
Sbjct: 185 QAMRKLTGSISRTNCTVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIK 244

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D+D + GN TRVKVVKNK+A PFKQVEFDIM+GEGIS  GELID+GVKA +V+KSG+W+S
Sbjct: 245 DRDEVVGNTTRVKVVKNKVAPPFKQVEFDIMFGEGISKTGELIDIGVKAGVVEKSGSWYS 304

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           +  QR+GQGREN+K FLR+N  +A  IE  +R + GL            + DD D  + 
Sbjct: 305 YGDQRIGQGRENTKGFLRDNPAMAIEIEDKIRASHGL------DFHMTESSDDGDVMEA 357


>gi|117928699|ref|YP_873250.1| recA protein [Acidothermus cellulolyticus 11B]
 gi|166199593|sp|A0LV04|RECA_ACIC1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|117649162|gb|ABK53264.1| recA protein [Acidothermus cellulolyticus 11B]
          Length = 345

 Score =  388 bits (995), Expect = e-106,   Method: Composition-based stats.
 Identities = 206/329 (62%), Positives = 267/329 (81%), Gaps = 2/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE A++QI+R +GKG++M+LG +      I+V+ +GS+ LD+ALGIGG P+GRIV
Sbjct: 6   DREKALEHAIAQIERAHGKGSLMRLGDEARA--PIDVIPTGSIALDVALGIGGLPRGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH +A +Q+ GG  AF+DAEHALD  YA+KLGVD  NLL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLALHAVANAQRAGGIAAFIDAEHALDPEYAKKLGVDTDNLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L+RSGA+D++VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADTLIRSGAIDVVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S S    +FINQ+R K+GV FGSPETTTGG ALKFY+S+RLD+RR+ +IK+     GN+T
Sbjct: 184 SHSGTTAIFINQLREKVGVFFGSPETTTGGKALKFYASIRLDVRRIDTIKEGQEAIGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK ASPF+Q EFDI+Y  GIS  G LID+GV+  I+ KSGAW++++G +LGQG+
Sbjct: 244 RVKVVKNKCASPFRQAEFDILYNVGISREGSLIDMGVEHGIIRKSGAWYTYEGDQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           EN++ FLREN ++A+ IE  +++  G+  
Sbjct: 304 ENARNFLRENPDLADEIEKKIKEKLGIGP 332


>gi|6225929|sp|Q9ZIQ0|RECA_RHOVI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|3769371|gb|AAC64504.1| RecA protein [Blastochloris viridis]
          Length = 348

 Score =  388 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 248/352 (70%), Positives = 306/352 (86%), Gaps = 5/352 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KAL+AAL+QI+R +GKG+IM+LG  G+  E +E +S+GSLGLDIALGIGG P+GR+
Sbjct: 1   MDKTKALDAALTQIERAFGKGSIMRLGKSGAALE-VETISTGSLGLDIALGIGGLPRGRV 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEI+GPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV+L +LLISQPD 
Sbjct: 60  VEIFGPESSGKTTLALHTVAEAQKKGGVCAFIDAEHALDPLYARKLGVNLDDLLISQPDA 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EG+MG+S PGMQARLMSQALRKLT+S
Sbjct: 120 GEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDSQPGMQARLMSQALRKLTAS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ISRS C+++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D + GNQ
Sbjct: 180 ISRSNCMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEVVGNQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEGIS  GELIDLGVKA +VDKSG+WFS   QR+GQG
Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIMYGEGISKAGELIDLGVKAGVVDKSGSWFSHDSQRIGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           REN K FL+ + ++A  IE+ +RQNAGL+A+ +L     +++D  D +D   
Sbjct: 300 RENVKGFLKGHPDVAGRIEAAIRQNAGLIAERILG----SSEDSEDGEDAAE 347


>gi|42416877|gb|AAS16320.1| RecA [Mycobacterium goodii]
          Length = 349

 Score =  388 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 209/344 (60%), Positives = 274/344 (79%), Gaps = 8/344 (2%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 6   PDREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 64  IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 124 GEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+
Sbjct: 184 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG
Sbjct: 244 TRVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLV------ADSLLQEPA 347
           +EN++ FL EN+++A  IE  +++  G+       AD +L  P 
Sbjct: 304 KENARKFLLENVDVANEIEKKIKEKLGIGAVVTAEADDVLPAPV 347


>gi|207366280|emb|CAQ58035.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366286|emb|CAQ58038.1| recombinase A [Agrobacterium tumefaciens]
          Length = 323

 Score =  388 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 253/322 (78%), Positives = 294/322 (91%), Gaps = 1/322 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ
Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLL 331
           REN+K FLR+N + A  IE  L
Sbjct: 302 RENAKTFLRDNPDTANEIEPAL 323


>gi|42416883|gb|AAS16323.1| RecA [Mycobacterium immunogenum]
          Length = 346

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 209/343 (60%), Positives = 273/343 (79%), Gaps = 2/343 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE AL+QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 5   PDREKALELALAQIDKSFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 63  IEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 123 GEQALEIADMLVRSGAIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD     GN+
Sbjct: 183 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTEAVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG
Sbjct: 243 TRVKVVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           +EN++ FL EN+++A  IE  +++  G+ A     E      D
Sbjct: 303 KENARNFLLENVDVANEIEKKIKEKLGIGAVLTDDEVVPAPVD 345


>gi|54025813|ref|YP_120055.1| recombinase A [Nocardia farcinica IFM 10152]
 gi|59798146|sp|Q5YT00|RECA_NOCFA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|54017321|dbj|BAD58691.1| putative RecA protein [Nocardia farcinica IFM 10152]
          Length = 347

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 212/342 (61%), Positives = 273/342 (79%), Gaps = 2/342 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE AL+Q+++ +GKGA+M+LG +    + I V+ +GS+ LD+ALGIGG P+GRIV
Sbjct: 7   DRDKALELALAQVEKSFGKGAVMRLGEEAR--QPISVIPTGSIALDVALGIGGLPRGRIV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YARKLGVD   LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYARKLGVDTDALLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+TS++
Sbjct: 125 EQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTSAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+T
Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGSDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+W++++G +LGQG+
Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISKEGSLIDMGVEQGFIRKSGSWYTYEGDQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           EN++ FL EN ++ + IE  +++  G+ AD   ++ A    D
Sbjct: 305 ENARKFLLENTDVRDEIEKKIKEKLGIGADLTAEDAAEVPAD 346


>gi|300023634|ref|YP_003756245.1| recA protein [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525455|gb|ADJ23924.1| recA protein [Hyphomicrobium denitrificans ATCC 51888]
          Length = 377

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 242/341 (70%), Positives = 294/341 (86%), Gaps = 2/341 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   +DK +ALE AL QI + +GKG+IM+LG+   +   IE + +GSLGLDIALGIGG P
Sbjct: 10  EGGKMDKKQALEHALQQIDKNFGKGSIMRLGANDKV--DIEAIPTGSLGLDIALGIGGLP 67

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRI+EIYGPESSGKTTLALH +A++QK GG CAF+DAEHA+D  YA+KLGV +++LLIS
Sbjct: 68  KGRIIEIYGPESSGKTTLALHVVAEAQKRGGICAFIDAEHAIDPGYAKKLGVKIEDLLIS 127

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEI D LVRSGAVD++V+DSVAALTP+AE+EG+MG+SLPG+QARLMSQALRK
Sbjct: 128 QPDTGEQALEIADTLVRSGAVDVLVVDSVAALTPKAELEGEMGDSLPGLQARLMSQALRK 187

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SIS+SKC++VFINQ+RMKIG+MFG+PETTTGGNALKFY+SVRLDIRR+G IK+++  
Sbjct: 188 LTGSISKSKCMVVFINQIRMKIGIMFGNPETTTGGNALKFYASVRLDIRRIGQIKEREET 247

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYGEGIS  GELIDLGVKA IV+KSGAW S+ G R
Sbjct: 248 VGNQTRVKVVKNKVAPPFKQVEFDIMYGEGISKVGELIDLGVKAGIVEKSGAWMSYNGDR 307

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           +GQGREN+K +L+EN +IA  IE+ +R NAGL+ + +L  P
Sbjct: 308 IGQGRENAKTYLKENPKIAAEIENSIRANAGLIVEKMLVNP 348


>gi|149928250|ref|ZP_01916494.1| recombinase A [Limnobacter sp. MED105]
 gi|149823056|gb|EDM82297.1| recombinase A [Limnobacter sp. MED105]
          Length = 359

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 226/358 (63%), Positives = 290/358 (81%), Gaps = 2/358 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           D R +    +K KAL AALSQI++ +GKG+IM+ G    I + I+ VS+GSLGLDIALGI
Sbjct: 3   DLRTKNQSSEKVKALAAALSQIEKQFGKGSIMRFGEN-EIIDDIQSVSTGSLGLDIALGI 61

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGTCAF+DAEHALD  YA KLGV+L +
Sbjct: 62  GGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTCAFIDAEHALDVQYAAKLGVNLPD 121

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLISQPDTGEQALEI D LVRSG+VD++++DSVAALTP+AEIEGDMG+SLPG+QARLMSQ
Sbjct: 122 LLISQPDTGEQALEIVDALVRSGSVDLVIVDSVAALTPKAEIEGDMGDSLPGLQARLMSQ 181

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT++I R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIK 
Sbjct: 182 ALRKLTANIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIKK 241

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            + + G++TRVKVVKNK++ PFKQ EFDI+YG+G S  GE++DLGV    VDK+GAW+S+
Sbjct: 242 GEEVIGSETRVKVVKNKVSPPFKQAEFDILYGQGTSREGEVVDLGVLHGFVDKAGAWYSY 301

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL-VADSLLQEPAINTKDDADKDD 358
            G+++GQG++N++ FL+ N  +A  IE+ +R+  G+ + +     P    K++ +  +
Sbjct: 302 NGEKIGQGKDNARDFLKANPVMAAEIENKIREKLGVRLLEEAAAAPVTKKKNEVEDAE 359


>gi|170781613|ref|YP_001709945.1| recombinase A [Clavibacter michiganensis subsp. sepedonicus]
 gi|169156181|emb|CAQ01323.1| recombinase A [Clavibacter michiganensis subsp. sepedonicus]
          Length = 405

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 213/334 (63%), Positives = 263/334 (78%), Gaps = 2/334 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +  D+ K+LE AL+QI R +GKG++M+LGS       + V+ +GS+ LD+ALGIGG P+G
Sbjct: 46  SSADREKSLETALAQIDRQFGKGSVMRLGSDERA--PVAVIPTGSVALDVALGIGGLPRG 103

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTL LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQP
Sbjct: 104 RIVEIYGPESSGKTTLTLHAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQP 163

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI DMLVRSG++D++VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT
Sbjct: 164 DTGEQALEIADMLVRSGSIDLVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLT 223

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
             +++++  ++FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     G
Sbjct: 224 GGLNQTQTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVG 283

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+TRVKVVKNKMA PFKQ EFDI+YG GIS  G LID GV+  IV KSGAW+++ G +LG
Sbjct: 284 NRTRVKVVKNKMAPPFKQAEFDILYGTGISREGSLIDFGVEHEIVRKSGAWYTYDGDQLG 343

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           QG+ENS+  L  N EIA  IE  ++   GLV D 
Sbjct: 344 QGKENSRKHLLNNPEIAAEIEQKIKVKLGLVKDP 377


>gi|73540233|ref|YP_294753.1| recombinase A [Ralstonia eutropha JMP134]
 gi|123760257|sp|Q475M4|RECA_CUPPJ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|72117646|gb|AAZ59909.1| RecA protein [Ralstonia eutropha JMP134]
          Length = 353

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 230/354 (64%), Positives = 293/354 (82%), Gaps = 3/354 (0%)

Query: 1   MDYRKEMN--IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIA 58
           MD +K       +K KAL AALSQI++ +GKG+IM++G  G + + I+VVS+GSLGLDIA
Sbjct: 1   MDDKKAGAGLSAEKQKALAAALSQIEKQFGKGSIMRMGD-GEVEKDIQVVSTGSLGLDIA 59

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGTCAF+DAEHALD  YA KLGVD
Sbjct: 60  LGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVNYASKLGVD 119

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARL
Sbjct: 120 VGELLISQPDTGEQALEITDALVRSGSIDLIVIDSVAALVPKAEIEGEMGDSLPGLQARL 179

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRKLT +I R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS
Sbjct: 180 MSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGS 239

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IK  D + GN+T+VKVVKNK++ PF++  FDI+YG+GIS  GE+IDLGV A IV+KSGAW
Sbjct: 240 IKKGDDVIGNETKVKVVKNKVSPPFREAFFDILYGQGISRQGEIIDLGVDAKIVEKSGAW 299

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           +S+ G ++GQG++N++ +LREN +IA+ IE+ +R   G+   + +    + T+D
Sbjct: 300 YSYNGDKIGQGKDNAREYLRENPDIAQEIENKVRAALGVAPMNSVPAAEVVTED 353


>gi|42416865|gb|AAS16314.1| RecA [Mycobacterium houstonense]
 gi|42416869|gb|AAS16316.1| RecA [Mycobacterium farcinogenes]
 gi|42416879|gb|AAS16321.1| RecA [Mycobacterium senegalense]
          Length = 349

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 207/344 (60%), Positives = 274/344 (79%), Gaps = 8/344 (2%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 6   PDREKALELAMAQIDKNFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 64  VEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 124 GEQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+
Sbjct: 184 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVK+VKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG
Sbjct: 244 TRVKIVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLV------ADSLLQEPA 347
           +EN++ FL EN+++A  IE  +++  G+       AD +L  P 
Sbjct: 304 KENARKFLLENVDVANEIEKKIKEKLGIGAVVTAEADDVLPAPV 347


>gi|283481769|emb|CBA10139.1| recombinase A [Agrobacterium larrymoorei]
          Length = 323

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 255/324 (78%), Positives = 294/324 (90%), Gaps = 1/324 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKG
Sbjct: 1   NSVDKSKALEAALSQIERSFGKGSIMKLGSNENVIE-VETVSTGSLSLDIALGIGGLPKG 59

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQP
Sbjct: 60  RIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQP 119

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT
Sbjct: 120 DTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLT 179

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           +SIS+SK +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + G
Sbjct: 180 ASISKSKTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVG 239

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           NQTRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLG
Sbjct: 240 NQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLG 299

Query: 308 QGRENSKIFLRENIEIAENIESLL 331
           QGREN+K FLR+N  +A  IE  L
Sbjct: 300 QGRENAKGFLRDNPAVANEIEMAL 323


>gi|225375593|ref|ZP_03752814.1| hypothetical protein ROSEINA2194_01218 [Roseburia inulinivorans DSM
           16841]
 gi|225212572|gb|EEG94926.1| hypothetical protein ROSEINA2194_01218 [Roseburia inulinivorans DSM
           16841]
          Length = 350

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 207/353 (58%), Positives = 275/353 (77%), Gaps = 3/353 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   DK KAL+AA+SQI++ YGKG+IM+LG   +    +E + +GSL LDIALG+GG PK
Sbjct: 1   MAREDKLKALDAAISQIEKQYGKGSIMKLGDNSAHMN-VETIPTGSLSLDIALGLGGLPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTT+ALH +A+ QK GG   F+DAEHALD  YA+ +GV++  L ISQ
Sbjct: 60  GRIIEIYGPESSGKTTVALHAVAEVQKRGGIAGFIDAEHALDPAYAKNIGVNIDELYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+GDMG+S  G+QARLMSQALRKL
Sbjct: 120 PDCGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+ IS+S CI++FINQ+R K+GVMFG+PETTTGG ALKFYSSVR+D+RR+ S+K    + 
Sbjct: 180 TAVISKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRMDVRRIESLKQAGEVV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVK+VKNK+A PFK+ EFDIM+G+GIS  G+++DL     I+ KSGAW+++ G ++
Sbjct: 240 GNRTRVKIVKNKVAPPFKEAEFDIMFGKGISKEGDILDLAADCGIIVKSGAWYAYNGDKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           GQGREN+K +LREN  + E +E+ +R+   L  D   +E     + +  +D+ 
Sbjct: 300 GQGRENAKTYLRENPLVCEEVEAKVREKFQL--DGTAEETDAEGEPEVLEDEE 350


>gi|83589927|ref|YP_429936.1| recA protein [Moorella thermoacetica ATCC 39073]
 gi|83572841|gb|ABC19393.1| RecA protein [Moorella thermoacetica ATCC 39073]
          Length = 348

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 208/344 (60%), Positives = 274/344 (79%), Gaps = 1/344 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           I +K +ALE ALSQI+R +GKG+IM+LG  G+    +E +S+G+L LD+ALG+GG P+GR
Sbjct: 6   INEKQRALEMALSQIERHFGKGSIMRLGETGARLN-VEAISTGALPLDLALGVGGLPRGR 64

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EI+GPESSGKTT+ALH IA++Q+ GGT AF+DAEHALD +YA  LGVD  NLL+SQPD
Sbjct: 65  VIEIFGPESSGKTTVALHVIAEAQRAGGTAAFIDAEHALDPVYAHNLGVDTDNLLVSQPD 124

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGA+D+IVIDSVAAL PRAE+EG+MG++  G+QARLMSQALRKL  
Sbjct: 125 TGEQALEIAEALVRSGAIDVIVIDSVAALVPRAELEGEMGDAHVGLQARLMSQALRKLAG 184

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            IS+S+ + +FINQ+R K+GV+FG+PETT GG ALKFY+SVRLD+R+V  +K    I GN
Sbjct: 185 IISKSRTVAIFINQLREKVGVLFGNPETTPGGRALKFYASVRLDVRKVEQLKAGTEIVGN 244

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PF+Q EFDI+YG GI   G L+D+G +  I+ KSGAW+S    RLGQ
Sbjct: 245 RTRVKVVKNKVAPPFRQAEFDIIYGRGIDREGCLLDMGTELDIIKKSGAWYSLGEDRLGQ 304

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GRE +K FLRE+ ++A  +E+ +R+ AGL+  +  +E A + +D
Sbjct: 305 GREAAKDFLREHPDLAAALETKIREKAGLINFTAGKEDATSGED 348


>gi|207366278|emb|CAQ58034.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366342|emb|CAQ58066.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366344|emb|CAQ58067.1| recombinase A [Agrobacterium tumefaciens]
 gi|255287394|emb|CAQ58036.2| recombinase A [Agrobacterium tumefaciens]
          Length = 323

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 252/319 (78%), Positives = 293/319 (91%), Gaps = 1/319 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ
Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301

Query: 310 RENSKIFLRENIEIAENIE 328
           REN+K FLR+N + A  IE
Sbjct: 302 RENAKTFLRDNPDTANEIE 320


>gi|3219854|sp|P95846|RECA_STRRM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|1729800|emb|CAA63924.1| RecA protein [Streptomyces rimosus]
          Length = 376

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 207/331 (62%), Positives = 270/331 (81%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M++G +    E IEV+ + S  LD+ALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRMGERSK--EPIEVIPTASTALDVALGVGGIPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTTL LH +A +QK GG+ AF+DAEHALD  YA+KLGVD   L++SQ
Sbjct: 59  GRVVEIYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYAKKLGVDTDALILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++++SK   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD     
Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTEAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR KVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   + KSGAW++++G +L
Sbjct: 239 GNRTRCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFIRKSGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FL++N ++A  +E  +++  G+
Sbjct: 299 GQGKENARNFLKDNPDLANEVEKKIKEKLGV 329


>gi|110679928|ref|YP_682935.1| recombinase A [Roseobacter denitrificans OCh 114]
 gi|109456044|gb|ABG32249.1| RecA protein [Roseobacter denitrificans OCh 114]
          Length = 359

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 242/351 (68%), Positives = 295/351 (84%), Gaps = 4/351 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M+ +K     DK KAL++AL+QI+R +GKG+IM+LG++G++ + I+  S+GSLGLDIALG
Sbjct: 9   MNSKKS---ADKQKALDSALAQIERQFGKGSIMKLGAEGAV-QDIQASSTGSLGLDIALG 64

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG P GRIVEIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YA+KLGVDL 
Sbjct: 65  IGGLPMGRIVEIYGPESSGKTTLTLHCVAEQQKAGGVCAFVDAEHALDPTYAKKLGVDLD 124

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LLISQPDTGEQALEITD LVRSGAV+++++DSVAALTP++E+EGDMG+S  G+QARLMS
Sbjct: 125 ELLISQPDTGEQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSSVGVQARLMS 184

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKLT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++K
Sbjct: 185 QAMRKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGALK 244

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D+D + GN TRVKVVKNK+A+PFKQVEFDIMYGEGIS  GEL+DLGV A +VDKSG+WFS
Sbjct: 245 DRDEVVGNHTRVKVVKNKVAAPFKQVEFDIMYGEGISKMGELLDLGVAAGVVDKSGSWFS 304

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           +  +R+GQGREN+K FLREN+++A  IE  +R   GL  D    E   +  
Sbjct: 305 YGDERIGQGRENAKGFLRENVQMALEIEDKIRAAHGLDFDMPAHEKKADDD 355


>gi|207366288|emb|CAQ58039.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366290|emb|CAQ58040.1| recombinase A [Agrobacterium tumefaciens]
          Length = 323

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 254/319 (79%), Positives = 293/319 (91%), Gaps = 1/319 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ
Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301

Query: 310 RENSKIFLRENIEIAENIE 328
           REN+K FLR+N E A  IE
Sbjct: 302 RENAKTFLRDNPETANEIE 320


>gi|207366250|emb|CAQ58020.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366252|emb|CAQ58021.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366254|emb|CAQ58022.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366256|emb|CAQ58023.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366258|emb|CAQ58024.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366260|emb|CAQ58025.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366262|emb|CAQ58026.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366264|emb|CAQ58027.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366266|emb|CAQ58028.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366268|emb|CAQ58029.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366270|emb|CAQ58030.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366272|emb|CAQ58031.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366274|emb|CAQ58032.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366276|emb|CAQ58033.1| recombinase A [Agrobacterium tumefaciens]
          Length = 323

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 255/319 (79%), Positives = 294/319 (92%), Gaps = 1/319 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E +S+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETISTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVDI+V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDILVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ
Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301

Query: 310 RENSKIFLRENIEIAENIE 328
           REN+K FLR+N E+A  IE
Sbjct: 302 RENAKTFLRDNPEMASEIE 320


>gi|15614946|ref|NP_243249.1| recombinase A [Bacillus halodurans C-125]
 gi|11387031|sp|Q9KAA7|RECA_BACHD RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|10175003|dbj|BAB06102.1| multifunctional protein involved in homologous recombination
           [Bacillus halodurans C-125]
          Length = 349

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 210/349 (60%), Positives = 278/349 (79%), Gaps = 2/349 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG Q    + +  +SSG+L LDIALG+GG+P+GR
Sbjct: 1   MSDRKAALDMALRQIEKQFGKGSIMKLGEQAE--QRVSTISSGALALDIALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++E+YGPESSGKTT+ALH IA+ Q+ GG  AF+DAEHALD +YA+KLGV++  LL+SQPD
Sbjct: 59  VIEVYGPESSGKTTVALHAIAEVQRNGGQAAFIDAEHALDPVYAKKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAIDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR  ++K  + + GN
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK+A PFKQ E DIMYGEGIS  G ++D+  +  IV KSGAW+SF  +RLGQ
Sbjct: 239 KTKIKVVKNKVAPPFKQAEVDIMYGEGISREGSILDIASELDIVQKSGAWYSFNDERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           GREN+K FL+EN E AE IES +R++ GL  +  ++ P+    +D   D
Sbjct: 299 GRENAKQFLKENPEAAEEIESRIREHYGLNGEIEVEAPSEEEFEDLPLD 347


>gi|254475519|ref|ZP_05088905.1| protein RecA [Ruegeria sp. R11]
 gi|214029762|gb|EEB70597.1| protein RecA [Ruegeria sp. R11]
          Length = 355

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 243/340 (71%), Positives = 282/340 (82%), Gaps = 1/340 (0%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           +      DK KAL++AL+QI+R +GKG+IM+LG  G+    IE  S+GSLGLDIALGIGG
Sbjct: 8   KDNKKSGDKQKALDSALAQIERQFGKGSIMKLGD-GNPLNEIEASSTGSLGLDIALGIGG 66

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P GRIVEIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD  YA KLGVDL  LL
Sbjct: 67  LPMGRIVEIYGPESSGKTTLTLHCIAEQQKKGGVCAFVDAEHALDPQYAAKLGVDLDELL 126

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           ISQPDTGEQALEITD LVRSGAV+++++DSVAALTP++E+EGDMG+S  G+QARLMSQA+
Sbjct: 127 ISQPDTGEQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSNVGVQARLMSQAM 186

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D
Sbjct: 187 RKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRD 246

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN TRVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGV A +V KSGAWFS+  
Sbjct: 247 EVVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVAAGVVAKSGAWFSYGD 306

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343
           +R+GQGREN+K FLREN  IA +IE  +R   GL  D   
Sbjct: 307 ERIGQGRENAKTFLRENPHIAYDIEDKIRAAHGLEFDRPE 346


>gi|50955213|ref|YP_062501.1| recombination repairing protein [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951695|gb|AAT89396.1| recombination repairing protein [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 374

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 214/349 (61%), Positives = 270/349 (77%), Gaps = 2/349 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +  D+ KAL  AL+QI R +GKG++M+LGS       +EVV +GS+ LD+ALGIGG P+G
Sbjct: 20  SPADREKALVTALAQIDRQFGKGSVMRLGSDERA--PVEVVPTGSIALDVALGIGGLPRG 77

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTL LH IA +Q+ GG  AF+DAEHALD  YARKLGVD+  LL+SQP
Sbjct: 78  RIVEIYGPESSGKTTLTLHAIANAQRAGGIAAFIDAEHALDPDYARKLGVDIDALLVSQP 137

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI DMLVRSG++D+IVIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKLT
Sbjct: 138 DTGEQALEIADMLVRSGSIDLIVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLT 197

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++S++   ++FINQ+R K+GV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     G
Sbjct: 198 GALSQTNTTMIFINQLREKVGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVG 257

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+TRVKVVKNKMA PFKQ EFDI+YG GIS  G L+D GV+ ++V KSGAW++++G +LG
Sbjct: 258 NRTRVKVVKNKMAPPFKQAEFDILYGVGISHEGSLLDFGVEHALVKKSGAWYTYEGDQLG 317

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           QG+ENS+ FL  N +IA  IE+ ++   G+VAD              ++
Sbjct: 318 QGKENSRNFLIANPDIAAEIENKIKIKLGIVADPNADAEPTAAAGSLEE 366


>gi|42416887|gb|AAS16325.1| RecA [Mycobacterium peregrinum]
          Length = 351

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 206/341 (60%), Positives = 273/341 (80%), Gaps = 2/341 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 6   PDREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 64  VEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 124 GEQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R+KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+
Sbjct: 184 LNNSGTTAIFINQLRVKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG GIS  G LID+GV+   + KSG+WF+++G++LGQG
Sbjct: 244 TRVKVVKNKVSPPFKQAEFDILYGHGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           +EN++ F+ EN+++A  IE  +++  G+ A    +  A + 
Sbjct: 304 KENARKFMLENVDVANEIEKKIKEKLGIGAVVTAEAKADDV 344


>gi|294013267|ref|YP_003546727.1| recombination protein RecA [Sphingobium japonicum UT26S]
 gi|292676597|dbj|BAI98115.1| recombination protein RecA [Sphingobium japonicum UT26S]
          Length = 357

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 239/351 (68%), Positives = 292/351 (83%), Gaps = 4/351 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K+   +D+ KALEAALSQI R +GKG+ M+LGS+  I   IE +S+GSLGLDIALGIGG 
Sbjct: 11  KKTGTMDRQKALEAALSQIDRAFGKGSAMKLGSREKI--EIEAISTGSLGLDIALGIGGL 68

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GRIVEIYGPESSGKTTLALH IA++QK GG  AFVDAEHALD  YA+KLGVD+  L++
Sbjct: 69  PRGRIVEIYGPESSGKTTLALHAIAEAQKAGGIAAFVDAEHALDPGYAKKLGVDIDELIV 128

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D LVRS A+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALR
Sbjct: 129 SQPDTGEQALEIVDTLVRSNAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 188

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT SISRS+C+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD++ 
Sbjct: 189 KLTGSISRSRCLVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDRED 248

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           I GN TRVKVVKNK+A PFKQVEFDIMYGEG+S  GEL+D+GVKA +V+KSGAWFS+   
Sbjct: 249 IVGNATRVKVVKNKVAPPFKQVEFDIMYGEGVSKIGELLDIGVKAGLVEKSGAWFSYDSV 308

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           R+GQGREN+K +L+E+ E+AE +E  +R     VA+ ++  P    +DD +
Sbjct: 309 RIGQGRENAKTYLKEHPEMAERLEKAIRGKTEEVAEGMMAGP--EAEDDGE 357


>gi|260574638|ref|ZP_05842641.1| recA protein [Rhodobacter sp. SW2]
 gi|259023055|gb|EEW26348.1| recA protein [Rhodobacter sp. SW2]
          Length = 360

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 239/355 (67%), Positives = 288/355 (81%), Gaps = 4/355 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           ++ +++M   DK+KALE+AL+QI+R +GKG+IM+LG+       IE  S+GSLGLDIALG
Sbjct: 9   LNGKRDM---DKAKALESALAQIERQFGKGSIMKLGANSPAM-DIESTSTGSLGLDIALG 64

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG PKGRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YA+KLGV+L 
Sbjct: 65  IGGLPKGRIIEIYGPESSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLD 124

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LLISQPDTGEQALEI D LVRSGAV ++VIDSVAAL P++EIEGDMG+   G QARLMS
Sbjct: 125 ELLISQPDTGEQALEIVDTLVRSGAVSLVVIDSVAALVPKSEIEGDMGDMQMGSQARLMS 184

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKLT+SI RS C++VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK
Sbjct: 185 QAMRKLTASIGRSNCMVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIK 244

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D+D + G+ TRVKVVKNK+A PFKQVEFDIMYGEGIS  GELID+GVKA +V+KSG+W+S
Sbjct: 245 DRDEVVGSSTRVKVVKNKVAPPFKQVEFDIMYGEGISKTGELIDIGVKAGVVEKSGSWYS 304

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           +  +R+GQGREN+K+FL++N  +A  IE  +R   GL        P     D  D
Sbjct: 305 YGDERIGQGRENAKLFLKQNPAVAMEIEDKIRAANGLDFHMAEGGPDAAGDDLVD 359


>gi|237747401|ref|ZP_04577881.1| recA protein [Oxalobacter formigenes HOxBLS]
 gi|229378752|gb|EEO28843.1| recA protein [Oxalobacter formigenes HOxBLS]
          Length = 353

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 224/337 (66%), Positives = 282/337 (83%), Gaps = 1/337 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD  K  +  +K+KAL  AL+QI++ +GKG++M++   G + E I VVS+GSLGLDIALG
Sbjct: 1   MDDNKTASNPEKNKALAIALAQIEKQFGKGSVMRMA-PGVVVEEIPVVSTGSLGLDIALG 59

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG P+GR++EIYGPESSGKTTL L  IA+ QK GGTCAF+DAEHALD  YA+KLGV L+
Sbjct: 60  VGGLPRGRVIEIYGPESSGKTTLTLQVIAEMQKLGGTCAFIDAEHALDVGYAQKLGVHLQ 119

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +LLISQPDTGEQALEITD LVRSGAVD+IVIDSVAALTP+AEIEGDMG+SLPG+QARLMS
Sbjct: 120 DLLISQPDTGEQALEITDALVRSGAVDLIVIDSVAALTPKAEIEGDMGDSLPGLQARLMS 179

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT SI+++   ++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR GSIK
Sbjct: 180 QALRKLTGSINKTNTSVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSIK 239

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             D + G++TRVKVVKNK A PFK+  FDI+YGEG S  GE++DLG  A IV+K+G+W+S
Sbjct: 240 SSDEVIGSETRVKVVKNKTAPPFKEAYFDILYGEGTSREGEILDLGADAKIVEKAGSWYS 299

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           + G+R+GQG++N++ +LR + ++A  IE+ +R   G+
Sbjct: 300 YNGERIGQGKDNARNYLRAHPKLAREIENKVRAAYGV 336


>gi|207366328|emb|CAQ58059.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366330|emb|CAQ58060.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366332|emb|CAQ58061.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366334|emb|CAQ58062.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366336|emb|CAQ58063.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366338|emb|CAQ58064.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366340|emb|CAQ58065.1| recombinase A [Agrobacterium tumefaciens]
          Length = 323

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 253/319 (79%), Positives = 293/319 (91%), Gaps = 1/319 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ
Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301

Query: 310 RENSKIFLRENIEIAENIE 328
           REN+K FLR+N + A  IE
Sbjct: 302 RENAKTFLRDNPDTANEIE 320


>gi|207366314|emb|CAQ58052.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366316|emb|CAQ58053.1| recombinase A [Agrobacterium tumefaciens]
          Length = 323

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 256/319 (80%), Positives = 293/319 (91%), Gaps = 1/319 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVDI+V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDILVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ
Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301

Query: 310 RENSKIFLRENIEIAENIE 328
           REN+K FLR+N E A  IE
Sbjct: 302 RENAKTFLRDNPETANEIE 320


>gi|89054477|ref|YP_509928.1| recombinase A [Jannaschia sp. CCS1]
 gi|88864026|gb|ABD54903.1| recA protein [Jannaschia sp. CCS1]
          Length = 357

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 239/337 (70%), Positives = 283/337 (83%), Gaps = 1/337 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
            +    DK KAL++AL+QI+R +GKG+IM+LG   ++ + IE  S+GSLGLDIALGIGG 
Sbjct: 10  TDRKSADKQKALDSALAQIERQFGKGSIMKLGGD-NVLKDIEATSTGSLGLDIALGIGGL 68

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGR++EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD  YARKLGV+L  LLI
Sbjct: 69  PKGRVIEIYGPESSGKTTLTLHAIAEEQKKGGVCAFVDAEHALDPQYARKLGVNLDELLI 128

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D LVRSGAV ++V+DSVAALTP++E+EGDMG+S  G+ ARLMSQA+R
Sbjct: 129 SQPDTGEQALEIVDTLVRSGAVSMVVVDSVAALTPKSELEGDMGDSSVGVHARLMSQAMR 188

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT SI+RS C++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D 
Sbjct: 189 KLTGSINRSGCMVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRDE 248

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + GN TRVKVVKNK+A PFKQVEFDIMYGEGIS  GELID+GVKA IV+KSG+WFS+  +
Sbjct: 249 VVGNTTRVKVVKNKVAPPFKQVEFDIMYGEGISKNGELIDMGVKAGIVEKSGSWFSYGDE 308

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           R+GQGREN+K F+R+N  IA  IE  +R   GL  D 
Sbjct: 309 RVGQGRENAKQFMRDNPAIAYEIEDKIRAAHGLDFDM 345


>gi|282863914|ref|ZP_06272971.1| recA protein [Streptomyces sp. ACTE]
 gi|282560992|gb|EFB66537.1| recA protein [Streptomyces sp. ACTE]
          Length = 356

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 213/349 (61%), Positives = 276/349 (79%), Gaps = 3/349 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D  KAL+ AL+QI+R +GKGA+M+LG + +  E IEV+ +GS  LD+ALG+GG P+
Sbjct: 1   MAGTDHEKALDTALAQIERKFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE+YGPESSGKTTL LH +A +QK GG+ AFVDAEHALD  YA+KLGVD  NL++SQ
Sbjct: 59  GRVVEVYGPESSGKTTLTLHAVANAQKAGGSVAFVDAEHALDPEYAKKLGVDTDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI D+L+RSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIVDILIRSGAIDLIVIDSVAALVPRAEIEGEMGDSHMGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++S+++   +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     
Sbjct: 179 TSALSQTRTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGIDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL-VADSLLQEPAINTKDDA 354
           GQG+EN++ FL++N ++A  IE  + Q  G+ VA  +      +   D 
Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKILQKLGIGVAAKVAVAEDTDPAPDT 347


>gi|207366346|emb|CAQ58068.1| recombinase A [Agrobacterium tumefaciens]
          Length = 323

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 253/319 (79%), Positives = 292/319 (91%), Gaps = 1/319 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ
Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301

Query: 310 RENSKIFLRENIEIAENIE 328
           REN+K FLR+N E A  IE
Sbjct: 302 RENAKTFLRDNPETANEIE 320


>gi|207366322|emb|CAQ58056.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366326|emb|CAQ58058.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366356|emb|CAQ58073.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366358|emb|CAQ58074.1| recombinase A [Agrobacterium tumefaciens]
          Length = 323

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 255/319 (79%), Positives = 293/319 (91%), Gaps = 1/319 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ
Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQ 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301

Query: 310 RENSKIFLRENIEIAENIE 328
           REN+KIFLR+N E A  IE
Sbjct: 302 RENAKIFLRDNPETANEIE 320


>gi|59798225|sp|Q6AE00|RECA_LEIXX RecName: Full=Protein RecA; AltName: Full=Recombinase A
          Length = 357

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 214/349 (61%), Positives = 270/349 (77%), Gaps = 2/349 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +  D+ KAL  AL+QI R +GKG++M+LGS       +EVV +GS+ LD+ALGIGG P+G
Sbjct: 3   SPADREKALVTALAQIDRQFGKGSVMRLGSDERA--PVEVVPTGSIALDVALGIGGLPRG 60

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTL LH IA +Q+ GG  AF+DAEHALD  YARKLGVD+  LL+SQP
Sbjct: 61  RIVEIYGPESSGKTTLTLHAIANAQRAGGIAAFIDAEHALDPDYARKLGVDIDALLVSQP 120

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI DMLVRSG++D+IVIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKLT
Sbjct: 121 DTGEQALEIADMLVRSGSIDLIVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLT 180

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++S++   ++FINQ+R K+GV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     G
Sbjct: 181 GALSQTNTTMIFINQLREKVGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVG 240

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+TRVKVVKNKMA PFKQ EFDI+YG GIS  G L+D GV+ ++V KSGAW++++G +LG
Sbjct: 241 NRTRVKVVKNKMAPPFKQAEFDILYGVGISHEGSLLDFGVEHALVKKSGAWYTYEGDQLG 300

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           QG+ENS+ FL  N +IA  IE+ ++   G+VAD              ++
Sbjct: 301 QGKENSRNFLIANPDIAAEIENKIKIKLGIVADPNADAEPTAAAGSLEE 349


>gi|42416885|gb|AAS16324.1| RecA [Mycobacterium chelonae]
          Length = 346

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 208/343 (60%), Positives = 271/343 (79%), Gaps = 2/343 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE AL+QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 5   PDREKALELALAQIDKSFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 63  VEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+ ++VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 123 GEQALEIADMLVRSGAISLLVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD     GN+
Sbjct: 183 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG
Sbjct: 243 TRVKVVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           +EN++ FL EN+++A  IE  +++  G+ A     E      D
Sbjct: 303 KENARNFLLENVDVANEIEKKIKEKLGIGAVLTDDEVVPAPVD 345


>gi|42416875|gb|AAS16319.1| RecA [Mycobacterium chelonae]
          Length = 346

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 209/343 (60%), Positives = 271/343 (79%), Gaps = 2/343 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE AL+QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 5   PDREKALELALAQIDKSFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 63  VEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+ +IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 123 GEQALEIADMLVRSGAISLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD     GN+
Sbjct: 183 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG
Sbjct: 243 TRVKVVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           +EN++ FL EN+++A  IE  +++  G+ A     E      D
Sbjct: 303 KENARNFLLENVDVANEIEKKIKEKLGIGAVLTDDEVVPAPVD 345


>gi|207366292|emb|CAQ58041.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366294|emb|CAQ58042.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366296|emb|CAQ58043.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366298|emb|CAQ58044.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366300|emb|CAQ58045.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366302|emb|CAQ58046.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366304|emb|CAQ58047.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366306|emb|CAQ58048.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366308|emb|CAQ58049.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366310|emb|CAQ58050.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366312|emb|CAQ58051.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366348|emb|CAQ58069.1| recombinase A [Agrobacterium tumefaciens]
          Length = 323

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 254/319 (79%), Positives = 292/319 (91%), Gaps = 1/319 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ
Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301

Query: 310 RENSKIFLRENIEIAENIE 328
           REN+K FLR+N E A  IE
Sbjct: 302 RENAKTFLRDNPETANEIE 320


>gi|226306240|ref|YP_002766200.1| RecA protein [Rhodococcus erythropolis PR4]
 gi|259563342|sp|C0ZYM6|RECA_RHOE4 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226185357|dbj|BAH33461.1| RecA protein [Rhodococcus erythropolis PR4]
          Length = 345

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 208/338 (61%), Positives = 270/338 (79%), Gaps = 2/338 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KAL+ AL+QI + +GKG++M+LG    + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 6   PDRDKALDLALAQIDKNFGKGSVMRLGE--GVRQPIAVIPTGSIALDVALGIGGLPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA KLGVD   LL+SQPDT
Sbjct: 64  IEIYGPESSGKTTVALHAVANAQANGGIAAFIDAEHALDPDYAAKLGVDTDALLVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITDML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 124 GEQALEITDMLIRSGALDIVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGA 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S   ++FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     GN+
Sbjct: 184 MNNSGTTVIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDIRRIETLKDGTDAVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+W++++G +LGQG
Sbjct: 244 TRVKVVKNKVAPPFKQAEFDILYGQGISKEGSLIDMGVEHGFIRKSGSWYTYEGDQLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           +EN++ FL EN +I + IE  +++  G+ AD    + A
Sbjct: 304 KENARKFLLENTDIRDEIEKKIKEKLGIGADVTATDEA 341


>gi|145224556|ref|YP_001135234.1| recA protein [Mycobacterium gilvum PYR-GCK]
 gi|315444887|ref|YP_004077766.1| protein RecA [Mycobacterium sp. Spyr1]
 gi|189039598|sp|A4TCL7|RECA_MYCGI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|145217042|gb|ABP46446.1| recA protein [Mycobacterium gilvum PYR-GCK]
 gi|315263190|gb|ADT99931.1| protein RecA [Mycobacterium sp. Spyr1]
          Length = 350

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 208/345 (60%), Positives = 268/345 (77%), Gaps = 9/345 (2%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE AL+QI + +GKG++M+LG    +   I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 6   PDREKALELALAQIDKNFGKGSVMRLGED--VRPPIAVIPTGSIALDVALGIGGLPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD   LL+SQPDT
Sbjct: 64  IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKLGVDTDALLVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 124 GEQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD     GN+
Sbjct: 184 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF++ G++LGQG
Sbjct: 244 TRVKVVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVEQGFIRKSGSWFTYDGEQLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL-------VADSLLQEPA 347
           +EN++ FL +N ++   IE  +++  G+       VAD  L  P 
Sbjct: 304 KENARNFLLQNPDVGNEIEKKIKEKLGIGAQLTDDVADDALPAPV 348


>gi|207366318|emb|CAQ58054.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366320|emb|CAQ58055.1| recombinase A [Agrobacterium tumefaciens]
          Length = 323

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 253/319 (79%), Positives = 292/319 (91%), Gaps = 1/319 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ
Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301

Query: 310 RENSKIFLRENIEIAENIE 328
           REN+K FLR+N + A  IE
Sbjct: 302 RENAKTFLRDNPDTANEIE 320


>gi|207366324|emb|CAQ58057.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366354|emb|CAQ58072.1| recombinase A [Agrobacterium tumefaciens]
 gi|207366360|emb|CAQ58075.1| recombinase A [Agrobacterium tumefaciens]
          Length = 323

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 254/319 (79%), Positives = 293/319 (91%), Gaps = 1/319 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ
Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301

Query: 310 RENSKIFLRENIEIAENIE 328
           REN+KIFLR+N E A  IE
Sbjct: 302 RENAKIFLRDNPETANEIE 320


>gi|324997718|ref|ZP_08118830.1| recombinase A [Pseudonocardia sp. P1]
          Length = 350

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 210/351 (59%), Positives = 275/351 (78%), Gaps = 2/351 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+  D+ KALE AL+QI++ +GKG++M+LG Q  +   I  +S+GS+ LD+ALG+GG P+
Sbjct: 1   MSAPDRGKALELALAQIEKNHGKGSVMRLGDQTRV--PISAISTGSIALDVALGVGGIPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTT+ALH +A +Q  GG  AFVDAEHALD  YA+ LGVD   LL+SQ
Sbjct: 59  GRVVEIYGPESSGKTTVALHAVASAQAAGGVAAFVDAEHALDPEYAKALGVDTDELLVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI DML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDTGEQALEIADMLIRSGALDVIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T ++S S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD   + 
Sbjct: 179 TGALSTSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDIRRIETLKDGTDMV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G++TRVKVVKNK+A PFKQ EFD++YG GIS  G LID+GV+  I+ KSGAW++++G ++
Sbjct: 239 GSRTRVKVVKNKVAPPFKQAEFDVLYGVGISKEGSLIDVGVEQGIIRKSGAWYTYEGDQM 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           GQG+EN++ FL+EN ++A  +E  +++  G+ A    +E A      A  D
Sbjct: 299 GQGKENARKFLKENPDVAAEVEKRIKEKLGIGAVVDAEEAAPVEALPAPVD 349


>gi|99081071|ref|YP_613225.1| recombinase A [Ruegeria sp. TM1040]
 gi|99037351|gb|ABF63963.1| recA protein [Ruegeria sp. TM1040]
          Length = 357

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 247/351 (70%), Positives = 289/351 (82%), Gaps = 5/351 (1%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           + +    DK KAL++AL+QI+R +GKG+IM+LG  G+  + IE  S+GSLGLDIALGIGG
Sbjct: 8   KDDKKSGDKQKALDSALAQIERQFGKGSIMKLGD-GTALQEIEASSTGSLGLDIALGIGG 66

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P GRIVEIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD  YA+KLGVDL  LL
Sbjct: 67  LPMGRIVEIYGPESSGKTTLTLHCIAEQQKKGGVCAFVDAEHALDPQYAKKLGVDLDELL 126

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           ISQPDTGEQALEITD LVRSGAV+++++DSVAALTP++E+EGDMG+S  G+QARLMSQA+
Sbjct: 127 ISQPDTGEQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSNVGVQARLMSQAM 186

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT SISRSKC+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIKD+D
Sbjct: 187 RKLTGSISRSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIKDRD 246

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN TRVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGV A +V+KSGAWFS+  
Sbjct: 247 EVVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVAAGVVNKSGAWFSYGD 306

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           +R+GQGREN+K +LREN  IA  IE  +R   GL  D     P     DD 
Sbjct: 307 ERIGQGRENAKGYLRENSRIALEIEDKIRAAHGLDFDM----PPEAQDDDV 353


>gi|225388512|ref|ZP_03758236.1| hypothetical protein CLOSTASPAR_02248 [Clostridium asparagiforme
           DSM 15981]
 gi|225045443|gb|EEG55689.1| hypothetical protein CLOSTASPAR_02248 [Clostridium asparagiforme
           DSM 15981]
          Length = 375

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 207/339 (61%), Positives = 273/339 (80%), Gaps = 1/339 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   + MN  DK KAL+AAL+QI++ YGKG++M+LG  G+    IE V +GS+ LDIALG
Sbjct: 15  MVNNRNMNREDKLKALDAALTQIEKAYGKGSVMKLGDSGANMN-IETVPTGSISLDIALG 73

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG PKGRI+E+YGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YA+ +GVD+ 
Sbjct: 74  LGGVPKGRIIEVYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDID 133

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL ISQPD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+G+MG+S  G+QARLMS
Sbjct: 134 NLYISQPDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGEMGDSHVGLQARLMS 193

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT+ IS+S C+++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+RR+ ++K
Sbjct: 194 QALRKLTAVISKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRRIETLK 253

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
               + GN+ RVKVVKNK+A PFK+ EFDIM+G+GIS  G+++DL  K +I++KSGAWF+
Sbjct: 254 QGGEVIGNRVRVKVVKNKIAPPFKEAEFDIMFGKGISREGDILDLAAKDNIIEKSGAWFA 313

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           + G ++GQGREN+K +L +N +I   +E  +R   GL  
Sbjct: 314 YNGSKIGQGRENAKQYLADNPDILAEVEEKVRTKYGLAP 352


>gi|154509073|ref|ZP_02044715.1| hypothetical protein ACTODO_01590 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798707|gb|EDN81127.1| hypothetical protein ACTODO_01590 [Actinomyces odontolyticus ATCC
           17982]
          Length = 363

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 207/350 (59%), Positives = 271/350 (77%), Gaps = 3/350 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D++KALE ALSQI + +GKG++M+LG        ++V+ +GSL LD+ALGIGG P+GR
Sbjct: 13  TNDRNKALEVALSQIDKQFGKGSVMRLGDDNR--PPVQVIPTGSLALDVALGIGGLPRGR 70

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++E+YGPESSGKTT+ALH +A +QK GG  AF+DAEHALD +YAR LGVD  +LL+SQPD
Sbjct: 71  VIEVYGPESSGKTTVALHAVANAQKAGGNAAFIDAEHALDPVYARALGVDTDSLLVSQPD 130

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DML+RSG +DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T 
Sbjct: 131 TGEQALEIADMLIRSGGIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITG 190

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           ++S +    +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+  +  GN
Sbjct: 191 ALSATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKEAGAPVGN 250

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TR KVVKNKMA PFKQ EFDI+YG+GIS  G +ID+GV+A IV KSG+WF++   +LGQ
Sbjct: 251 RTRAKVVKNKMAPPFKQAEFDIVYGKGISREGSIIDMGVEAGIVRKSGSWFTYGDDQLGQ 310

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD-DADKD 357
           G+EN + FL +N E+A  IE  +  + G+       + + +  D D D+D
Sbjct: 311 GKENVRQFLVDNPELANEIEQKILVSLGIGETPDPDQASQDVPDIDPDED 360


>gi|255287396|emb|CAQ58037.2| recombinase A [Agrobacterium tumefaciens]
          Length = 320

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 252/319 (78%), Positives = 293/319 (91%), Gaps = 1/319 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ
Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301

Query: 310 RENSKIFLRENIEIAENIE 328
           REN+K FLR+N + A  IE
Sbjct: 302 RENAKTFLRDNPDTANEIE 320


>gi|111023723|ref|YP_706695.1| recombinase A [Rhodococcus jostii RHA1]
 gi|122955075|sp|Q0S1P9|RECA_RHOSR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|110823253|gb|ABG98537.1| recombinase A [Rhodococcus jostii RHA1]
          Length = 347

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 207/342 (60%), Positives = 267/342 (78%), Gaps = 2/342 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+ AL+QI + +GKG++M+LG    + + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 7   DRDKALDLALAQIDKNFGKGSVMRLGE--GVRQPIAVIPTGSIALDVALGIGGLPRGRVV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD   LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAQKLGVDTDALLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLIRSGALDILVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD     GN+T
Sbjct: 185 SNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDI+YG GIS  G LID+GV+   + KSG+W++++G +LGQG+
Sbjct: 245 RVKVVKNKVAPPFKQAEFDILYGLGISKEGSLIDMGVEHGFIRKSGSWYTYEGDQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           EN++ FL EN +I + IE  +++  G+ AD           +
Sbjct: 305 ENARKFLLENTDIRDEIEKKIKEKLGIGADVTAATDDAAPVE 346


>gi|313904906|ref|ZP_07838277.1| recA protein [Eubacterium cellulosolvens 6]
 gi|313470163|gb|EFR65494.1| recA protein [Eubacterium cellulosolvens 6]
          Length = 346

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 207/349 (59%), Positives = 275/349 (78%), Gaps = 8/349 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+ ALSQI++ +GKG +M+LG QG+    +E + +GSL LDIALG+GG P+GRIV
Sbjct: 6   NKMKALDVALSQIEKQFGKGTVMKLGDQGASLN-VEAIPTGSLSLDIALGVGGIPRGRIV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +++ QK GG   F+DAEHALD +YA+ +GVD+ NL ISQPD+G
Sbjct: 65  EIYGPESSGKTTVALHMVSEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQPDSG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ +VRSGAVDII++DSVAAL P+AEI+G+MG+S  G+QAR+MSQA RKLT++I
Sbjct: 125 EQALEITETMVRSGAVDIIIVDSVAALVPKAEIDGEMGDSHVGLQARMMSQACRKLTAAI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S++ C++VFINQ+R K+GVMFG+PETTTGG ALKFY+SVRLD+RRV S+K    + GN T
Sbjct: 185 SKTNCVVVFINQLREKVGVMFGNPETTTGGRALKFYASVRLDVRRVESLKQGGDVVGNHT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFKQ EFDIM+G+GIS   +++DL     IV KSGAW+++ G+++GQGR
Sbjct: 245 RVKIVKNKVAPPFKQAEFDIMFGKGISREADILDLAANLGIVQKSGAWYAYLGEKIGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           EN+K +L EN++    IE+ +R+  GL+       PA     DA+  D 
Sbjct: 305 ENAKQYLSENVDTMNEIETKVREAYGLI-------PASEAAGDAEGKDE 346


>gi|42416899|gb|AAS16331.1| RecA [Mycobacterium wolinskyi]
          Length = 349

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 205/331 (61%), Positives = 270/331 (81%), Gaps = 2/331 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 6   PDREKALELAMAQIDKNFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 64  VEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 124 GEQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+
Sbjct: 184 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVK+VKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG
Sbjct: 244 TRVKIVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           +EN++ FL EN++ A  IE  +++  G+ AD
Sbjct: 304 KENARKFLLENVDAANEIEKRIKEKLGIGAD 334


>gi|12084113|pdb|1G18|A Chain A, Reca-Adp-Alf4 Complex
 gi|12084114|pdb|1G19|A Chain A, Structure Of Reca Protein
 gi|28948652|pdb|1MO3|A Chain A, Reca-Adp Complex
 gi|28948653|pdb|1MO4|A Chain A, Reca-Atp-Gamma-S Complex
 gi|28948654|pdb|1MO5|A Chain A, Reca-Atp-Gamma-S-Mg Complex
 gi|28948655|pdb|1MO6|A Chain A, Reca-Datp-Mg Complex
          Length = 350

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 205/331 (61%), Positives = 270/331 (81%), Gaps = 2/331 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+ KALE A++QI++ YGKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GR
Sbjct: 4   TPDREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPD
Sbjct: 62  VIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T 
Sbjct: 122 TGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD  +  GN
Sbjct: 182 ALNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK  +PFKQ EFDI+YG+GIS  G LID+GV   ++ KSGAWF+++G++LGQ
Sbjct: 242 RTRVKVVKNKCLAPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           G+EN++ FL EN ++A+ IE  +++  G+ A
Sbjct: 302 GKENARNFLVENADVADEIEKKIKEKLGIGA 332


>gi|158320574|ref|YP_001513081.1| recA protein [Alkaliphilus oremlandii OhILAs]
 gi|158140773|gb|ABW19085.1| recA protein [Alkaliphilus oremlandii OhILAs]
          Length = 352

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 224/354 (63%), Positives = 279/354 (78%), Gaps = 2/354 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           ++K KAL+ ALSQI++ +GKG+IM+LG    +   +E VS+GS+GLD+ALGIGG PKGRI
Sbjct: 1   MEKKKALDMALSQIEKQFGKGSIMKLGEDAKL--NLESVSTGSIGLDVALGIGGIPKGRI 58

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT++LH IA++QK GG  AF+DAEHALD  YA+ LGVD++NL++SQPDT
Sbjct: 59  IEIYGPESSGKTTVSLHVIAETQKRGGIAAFIDAEHALDPSYAKNLGVDIENLIVSQPDT 118

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + LVRSGAVDIIV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL  S
Sbjct: 119 GEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLAGS 178

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S  I +FINQ+R KIGVMFG+PETTTGG ALKFY+SVRLD+R+V SIK  + + GN+
Sbjct: 179 ISKSNTIAIFINQLREKIGVMFGTPETTTGGRALKFYASVRLDVRKVDSIKQGNDVVGNR 238

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A+PFKQ EFDIMYGEGIS  G+++D+     IV KSGAW+S+   RLGQG
Sbjct: 239 TRVKVVKNKVAAPFKQAEFDIMYGEGISKAGDILDVAASLDIVTKSGAWYSYGEHRLGQG 298

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           REN K FL+EN EI+  IE+ +R+   L   S      I  K+D      +N E
Sbjct: 299 RENGKQFLKENPEISLEIENKIREYYNLPIQSGTNTDLIQAKNDVPDATEENEE 352


>gi|293192297|ref|ZP_06609408.1| protein RecA [Actinomyces odontolyticus F0309]
 gi|292820212|gb|EFF79206.1| protein RecA [Actinomyces odontolyticus F0309]
          Length = 363

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 207/350 (59%), Positives = 271/350 (77%), Gaps = 3/350 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D++KALE ALSQI + +GKG++M+LG        ++V+ +GSL LD+ALGIGG P+GR
Sbjct: 13  TNDRNKALEVALSQIDKQFGKGSVMRLGDDNR--PPVQVIPTGSLALDVALGIGGLPRGR 70

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++E+YGPESSGKTT+ALH +A +QK GG  AF+DAEHALD +YAR LGVD  +LL+SQPD
Sbjct: 71  VIEVYGPESSGKTTVALHAVANAQKAGGNAAFIDAEHALDPVYARALGVDTDSLLVSQPD 130

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DML+RSG +DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T 
Sbjct: 131 TGEQALEIADMLIRSGGIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITG 190

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           ++S +    +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+  +  GN
Sbjct: 191 ALSATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKEAGAPVGN 250

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TR KVVKNKMA PFKQ EFDI+YG+GIS  G +ID+GV+A IV KSG+WF++   +LGQ
Sbjct: 251 RTRAKVVKNKMAPPFKQAEFDIVYGKGISREGSIIDMGVEAGIVRKSGSWFTYGDDQLGQ 310

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD-DADKD 357
           G+EN + FL +N E+A  IE  +  + G+       + + +  D D D+D
Sbjct: 311 GKENVRQFLVDNPELANEIEQKILVSLGIGEAPDPDQASQDVPDIDPDED 360


>gi|284030936|ref|YP_003380867.1| recA protein [Kribbella flavida DSM 17836]
 gi|283810229|gb|ADB32068.1| recA protein [Kribbella flavida DSM 17836]
          Length = 355

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 213/347 (61%), Positives = 269/347 (77%), Gaps = 2/347 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E    D+ KAL  AL+QI+R  GKG++M+LG QG     IEV+ +GS+ LD+ALGIGG P
Sbjct: 8   ERIAADREKALATALTQIERQCGKGSVMRLGEQGKA--PIEVIPTGSIALDVALGIGGLP 65

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YARKLGVD   LL+S
Sbjct: 66  RGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPDYARKLGVDTDALLVS 125

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD+GEQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK
Sbjct: 126 QPDSGEQALEIADMLIRSGAIDIVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRK 185

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           +T ++S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ S+KD    
Sbjct: 186 MTGAVSGTNTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIESLKDGTDF 245

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G L+DLGV+   V K+GAWF+++  +
Sbjct: 246 VGNRTRVKVVKNKVAPPFKQAEFDIIYGQGISREGSLLDLGVEQGFVRKAGAWFTYESDQ 305

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           LGQGREN++ FLR+N ++A  +E  +++  G+  D           D
Sbjct: 306 LGQGRENARNFLRDNPDLANELEKKIKEKMGIGTDKAADATPPVEVD 352


>gi|312139381|ref|YP_004006717.1| recombinase a [Rhodococcus equi 103S]
 gi|325672738|ref|ZP_08152434.1| recombination protein A [Rhodococcus equi ATCC 33707]
 gi|311888720|emb|CBH48032.1| recombinase A [Rhodococcus equi 103S]
 gi|325556615|gb|EGD26281.1| recombination protein A [Rhodococcus equi ATCC 33707]
          Length = 345

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 212/348 (60%), Positives = 274/348 (78%), Gaps = 10/348 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALE AL+QI + +GKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 7   DRDKALELALAQIDKSFGKGSVMRLGEEAR--QPIAVIPTGSIALDVALGIGGLPRGRVV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YARKLGVD   LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQANGGVAAFIDAEHALDPEYARKLGVDTDALLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD     GN+T
Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+W++++G +LGQG+
Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISKEGSLIDMGVEHGFIRKSGSWYTYEGDQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           EN++ FL EN +I + IE  +++  G+ A        + T +DA++ D
Sbjct: 305 ENARKFLLENTDIRDEIEKKIKEKLGIGA--------VLTDEDAEQAD 344


>gi|229490860|ref|ZP_04384695.1| protein RecA [Rhodococcus erythropolis SK121]
 gi|229322250|gb|EEN88036.1| protein RecA [Rhodococcus erythropolis SK121]
          Length = 349

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 208/338 (61%), Positives = 270/338 (79%), Gaps = 2/338 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KAL+ AL+QI + +GKG++M+LG    + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 10  PDRDKALDLALAQIDKNFGKGSVMRLGE--GVRQPIAVIPTGSIALDVALGIGGLPRGRV 67

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA KLGVD   LL+SQPDT
Sbjct: 68  IEIYGPESSGKTTVALHAVANAQANGGIAAFIDAEHALDPDYAAKLGVDTDALLVSQPDT 127

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITDML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 128 GEQALEITDMLIRSGALDIVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGA 187

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S   ++FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     GN+
Sbjct: 188 MNNSGTTVIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDIRRIETLKDGTDAVGNR 247

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+W++++G +LGQG
Sbjct: 248 TRVKVVKNKVAPPFKQAEFDILYGQGISKEGSLIDMGVEHGFIRKSGSWYTYEGDQLGQG 307

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           +EN++ FL EN +I + IE  +++  G+ AD    + A
Sbjct: 308 KENARKFLLENTDIRDEIEKKIKEKLGIGADVTATDEA 345


>gi|307295018|ref|ZP_07574860.1| recA protein [Sphingobium chlorophenolicum L-1]
 gi|306879492|gb|EFN10710.1| recA protein [Sphingobium chlorophenolicum L-1]
          Length = 357

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 238/351 (67%), Positives = 292/351 (83%), Gaps = 4/351 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K+   +D+ KALEAALSQI R +GKG+ M+LGS+  I   IE +S+GSLGLDIALGIGG 
Sbjct: 11  KKTGTMDRQKALEAALSQIDRAFGKGSAMKLGSREKI--EIEAISTGSLGLDIALGIGGL 68

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GRI+EIYGPESSGKTTLALH IA++QKTGG  AFVDAEHALD  YA+KLGVD+  L++
Sbjct: 69  PRGRIIEIYGPESSGKTTLALHAIAEAQKTGGIAAFVDAEHALDPGYAKKLGVDIDELIV 128

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D LVRS A+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALR
Sbjct: 129 SQPDTGEQALEIVDTLVRSNAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 188

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT SISRSKC+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD++ 
Sbjct: 189 KLTGSISRSKCMVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDRED 248

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           I GN TRVKVVKNK+A PFKQVEFDIMYGEG+S  GEL+D+GVK  +V+KSGAWFS+   
Sbjct: 249 IVGNATRVKVVKNKVAPPFKQVEFDIMYGEGVSKIGELLDIGVKTGLVEKSGAWFSYDSV 308

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           R+GQGREN+K +L+E+ E+A+ +E  +R     VA+ ++  P    +DD +
Sbjct: 309 RIGQGRENAKTYLKEHPEMADKLEKAIRGKTEEVAEGMMAGP--EAEDDGE 357


>gi|85703237|ref|ZP_01034341.1| recombinase A [Roseovarius sp. 217]
 gi|85672165|gb|EAQ27022.1| recombinase A [Roseovarius sp. 217]
          Length = 357

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 238/337 (70%), Positives = 285/337 (84%), Gaps = 4/337 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD ++     DK KAL++AL+QI+R +GKG+IM+LG +  I + IE  S+GSLGLDIALG
Sbjct: 9   MDNKR---NADKQKALDSALAQIERQFGKGSIMKLGGENPI-KDIESTSTGSLGLDIALG 64

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG PKGRIVE+YGPESSGKTTL LH +A+ QK GG CAFVDAEHALD IYARKLGVDL 
Sbjct: 65  IGGIPKGRIVEVYGPESSGKTTLTLHCVAEEQKKGGVCAFVDAEHALDPIYARKLGVDLD 124

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LLISQPDTGEQALEI D LVRSGAV +IV+DSVAALTP++E+EG+MG+S  G+ ARLMS
Sbjct: 125 ELLISQPDTGEQALEIVDTLVRSGAVSMIVVDSVAALTPKSELEGEMGDSSVGVHARLMS 184

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKLT SISR+ C ++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++K
Sbjct: 185 QAMRKLTGSISRTNCTVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVK 244

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D+D I GN TRVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+D+GVKA +V+KSG+W+S
Sbjct: 245 DRDEIVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKTGELVDMGVKAGVVEKSGSWYS 304

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           +  +R+GQGREN+K +LR+N   A  IE  +R + GL
Sbjct: 305 YGDERIGQGRENAKTYLRDNPATALEIEDKIRASHGL 341


>gi|83955443|ref|ZP_00964074.1| recombinase A [Sulfitobacter sp. NAS-14.1]
 gi|83840087|gb|EAP79262.1| recombinase A [Sulfitobacter sp. NAS-14.1]
          Length = 348

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 246/363 (67%), Positives = 301/363 (82%), Gaps = 16/363 (4%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD +K+    +K KAL++AL+QI+R +GKG+IM+LG++G+I + I+  S+GSLGLDIALG
Sbjct: 1   MDNKKQ---AEKQKALDSALAQIERQFGKGSIMKLGAEGAI-QDIKASSTGSLGLDIALG 56

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG P GRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YARKLGVD+ 
Sbjct: 57  IGGLPMGRIIEIYGPESSGKTTLTLHCVAEQQKNGGVCAFVDAEHALDPQYARKLGVDID 116

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LLISQPDTGEQALEITD LVRSGAV+++V+DSVAALTP++E+EGDMG+S  G+QARLMS
Sbjct: 117 ELLISQPDTGEQALEITDTLVRSGAVNMVVVDSVAALTPKSELEGDMGDSSVGVQARLMS 176

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKLT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++K
Sbjct: 177 QAMRKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGALK 236

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D+D + GN TRVK+VKNK+A+PFKQVEFDIMYGEGIS  GEL+DLGVKA +VDKSG+WFS
Sbjct: 237 DRDEVVGNATRVKIVKNKVAAPFKQVEFDIMYGEGISKMGELLDLGVKAGVVDKSGSWFS 296

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           +  +R+GQGREN+K FL+EN  +A +IE  +R   GL  D             +D DD D
Sbjct: 297 YGDERIGQGRENAKTFLKENTAMANDIEDKIRAAHGLDFDG------------SDSDDAD 344

Query: 361 NVE 363
            +E
Sbjct: 345 ILE 347


>gi|217035318|pdb|2ZRC|A Chain A, Msreca Q196n Form Iv
 gi|217035319|pdb|2ZRD|A Chain A, Msreca Q196n Adp Form Iv
 gi|217035320|pdb|2ZRE|A Chain A, Msreca Q196n Atpgs Form Iv
 gi|217035321|pdb|2ZRF|A Chain A, Msreca Q196n Datp Form Iv
 gi|217035322|pdb|2ZRG|A Chain A, Msreca Q196n Datp Form Ii'
          Length = 349

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 208/344 (60%), Positives = 272/344 (79%), Gaps = 8/344 (2%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 6   PDREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 64  IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 124 GEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FIN +R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+
Sbjct: 184 LNNSGTTAIFINNLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG
Sbjct: 244 TRVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLV------ADSLLQEPA 347
           +EN++ FL EN ++A  IE  +++  G+       AD +L  P 
Sbjct: 304 KENARKFLLENTDVANEIEKKIKEKLGIGAVVTAEADDVLPAPV 347


>gi|217035313|pdb|2ZR0|A Chain A, Msreca-Q196e Mutant
 gi|217035315|pdb|2ZR9|A Chain A, Msreca Q196e Datp Form Iv
 gi|217035316|pdb|2ZRA|A Chain A, Msreca Q196e Atpgs
 gi|217035317|pdb|2ZRB|A Chain A, Msreca Q196e Form Ii'
          Length = 349

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 208/344 (60%), Positives = 273/344 (79%), Gaps = 8/344 (2%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 6   PDREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 64  IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 124 GEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FIN++R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+
Sbjct: 184 LNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG
Sbjct: 244 TRVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLV------ADSLLQEPA 347
           +EN++ FL EN ++A  IE  +++  G+       AD +L  P 
Sbjct: 304 KENARKFLLENTDVANEIEKKIKEKLGIGAVVTAEADDVLPAPV 347


>gi|119716568|ref|YP_923533.1| recA protein [Nocardioides sp. JS614]
 gi|166220661|sp|A1SJ61|RECA_NOCSJ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|119537229|gb|ABL81846.1| RecA protein [Nocardioides sp. JS614]
          Length = 350

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 206/333 (61%), Positives = 274/333 (82%), Gaps = 2/333 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+ I++ +GKG++M+LG +  +   +E++ SGS+ LD+ALG+GGFP+
Sbjct: 1   MAGGDREKALDAALANIEKQFGKGSVMRLGDE--VRAPLEIIPSGSIALDVALGLGGFPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA+ LGVD   LL+SQ
Sbjct: 59  GRVVEIYGPESSGKTTVALHAVANAQRAGGIVAFIDAEHALDPDYAKNLGVDTDALLVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+GEQALEI DML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDSGEQALEIADMLIRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKM 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T +++ SK  ++FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD   + 
Sbjct: 179 TGALNNSKTTMIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDMV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDIMYG+GIS  G LID+GV+A +V K+GAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDIMYGKGISREGGLIDVGVEAGLVRKAGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           GQG+EN++ FLR+N ++A  +E  + +  G+  
Sbjct: 299 GQGKENARAFLRDNPDLANELEKKILEKLGVGP 331


>gi|240171187|ref|ZP_04749846.1| recombinase A [Mycobacterium kansasii ATCC 12478]
          Length = 349

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 204/330 (61%), Positives = 270/330 (81%), Gaps = 2/330 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 5   PDREKALELAMAQIEKSYGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 63  VEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T +
Sbjct: 123 GEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+
Sbjct: 183 LNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVK+VKNK++ PFKQ EFDI+YG+GIS  G LID+GV    + KSGAWF+++G++LGQG
Sbjct: 243 TRVKIVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVDQGFIRKSGAWFTYEGEQLGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +EN++ FL EN ++A  IE  +++  G+ A
Sbjct: 303 KENARNFLMENADVANEIEKKIKEKLGIGA 332


>gi|163731785|ref|ZP_02139232.1| recombinase A [Roseobacter litoralis Och 149]
 gi|161395239|gb|EDQ19561.1| recombinase A [Roseobacter litoralis Och 149]
          Length = 359

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 240/351 (68%), Positives = 293/351 (83%), Gaps = 4/351 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M+ +K     DK KAL++AL+QI+R +GKG+IM+LG+ G++ + I   S+GSLGLDIALG
Sbjct: 9   MNSKKS---ADKQKALDSALAQIERQFGKGSIMKLGTAGAV-QDITASSTGSLGLDIALG 64

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG P GRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YA+KLG+DL 
Sbjct: 65  IGGLPMGRIIEIYGPESSGKTTLTLHCVAEQQKAGGVCAFVDAEHALDPAYAKKLGIDLD 124

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LLISQPDTGEQALEITD LVRSGAV+++++DSVAALTP++E+EGDMG+S  G+QARLMS
Sbjct: 125 ELLISQPDTGEQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSSVGVQARLMS 184

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKLT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++K
Sbjct: 185 QAMRKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGALK 244

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D+D + GN TRVKVVKNK+A+PFKQVEFDIMYGEGIS  GEL+DLGV A +VDKSG+WFS
Sbjct: 245 DRDEVVGNHTRVKVVKNKVAAPFKQVEFDIMYGEGISKMGELLDLGVAAGVVDKSGSWFS 304

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           +  +R+GQGREN+K FLREN+++A  IE  +R   GL  D    E   +  
Sbjct: 305 YGDERIGQGRENAKGFLRENVQMALEIEDKIRAAHGLDFDMPAHEKKADDD 355


>gi|188591287|ref|YP_001795887.1| recombinase a [Cupriavidus taiwanensis LMG 19424]
 gi|238692937|sp|B2AHB8|RECA_CUPTR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|170938181|emb|CAP63167.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Cupriavidus taiwanensis LMG 19424]
          Length = 354

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 231/355 (65%), Positives = 294/355 (82%), Gaps = 3/355 (0%)

Query: 1   MDYRKEMN--IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIA 58
           MD +K       +K KAL AALSQI++ +GKG+IM+LG  G + + I+VVS+GSLGLDIA
Sbjct: 1   MDDKKAGAGVSAEKQKALAAALSQIEKQFGKGSIMRLGD-GEVEKDIQVVSTGSLGLDIA 59

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGTCAF+DAEHALD  YA KLGV+
Sbjct: 60  LGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVNYASKLGVN 119

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           + +LLISQPDTGEQALEITD LVRSG++D+I+IDSVAAL P+AEIEG+MG+SLPG+QARL
Sbjct: 120 VGDLLISQPDTGEQALEITDALVRSGSIDLIIIDSVAALVPKAEIEGEMGDSLPGLQARL 179

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRKLT +I R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS
Sbjct: 180 MSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGS 239

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IK  D + GN+T+VKVVKNK++ PF++  FDI+YG+GIS  GE+IDLGV A IV+KSGAW
Sbjct: 240 IKKGDDVIGNETKVKVVKNKVSPPFREAFFDILYGQGISRQGEIIDLGVDAKIVEKSGAW 299

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           +S+ G+++GQG++N++ +LREN +IA  IE+ +R   G+VA +        T +D
Sbjct: 300 YSYNGEKIGQGKDNAREYLRENPDIAAEIENKVRAALGVVAMNPTAAAVAATVED 354


>gi|254449721|ref|ZP_05063158.1| protein RecA [Octadecabacter antarcticus 238]
 gi|198264127|gb|EDY88397.1| protein RecA [Octadecabacter antarcticus 238]
          Length = 371

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 244/352 (69%), Positives = 286/352 (81%), Gaps = 2/352 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
            +    DK KAL++AL+QI+R +GKG+IM LG  G+  + IE  S+GSLGLDIALGIGG 
Sbjct: 10  TDKKSADKQKALDSALAQIERQFGKGSIMTLG--GNAIQEIESTSTGSLGLDIALGIGGI 67

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGR+VEIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YA+KLGV+L  LLI
Sbjct: 68  PKGRVVEIYGPESSGKTTLTLHCLAEEQKKGGVCAFVDAEHALDPGYAKKLGVNLDELLI 127

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D LVRSGAV +IV+DSVAALTP++E+EGDMG+   G+ ARLMSQA+R
Sbjct: 128 SQPDTGEQALEIVDTLVRSGAVSMIVVDSVAALTPKSELEGDMGDHSVGVHARLMSQAMR 187

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT SISR+KC ++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GS+KD+D 
Sbjct: 188 KLTGSISRTKCTVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKDRDE 247

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           I GN TRVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+D+GVKA IV+KSG+WFS+  +
Sbjct: 248 IVGNSTRVKVVKNKVAPPFKQVEFDIMYGEGISKLGELVDMGVKAGIVEKSGSWFSYGDE 307

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           R+GQGREN+K FLREN   A  IE  +R   GL  D   ++     KD A K
Sbjct: 308 RIGQGRENAKTFLRENPHFANEIEDKIRAAHGLDFDGATKKDCATKKDGAAK 359


>gi|227012369|gb|ACP08579.1| recA protein [Vibrio cholerae O395]
          Length = 412

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 211/354 (59%), Positives = 278/354 (78%), Gaps = 2/354 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           DY + +   +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG 
Sbjct: 53  DYPERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 110

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  
Sbjct: 111 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 170

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 171 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 230

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 231 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 290

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+
Sbjct: 291 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSY 350

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            G ++GQG+ N+  +L+EN EIA+ ++  LR+      +  L     +  DD +
Sbjct: 351 NGDKIGQGKANACKYLKENPEIAKTLDKKLREMLLNPENMQLTGETASAADDVE 404


>gi|217035323|pdb|2ZRH|A Chain A, Msreca Q196a Form Iv
 gi|217035324|pdb|2ZRI|A Chain A, Msreca Q196a Adp Form Iv
 gi|217035325|pdb|2ZRJ|A Chain A, Msreca Q196a Atpgs Form Iv
 gi|217035326|pdb|2ZRK|A Chain A, Msreca Q196a Datp Form Iv
 gi|217035327|pdb|2ZRL|A Chain A, Msreca Q196a Datp Form Ii'
          Length = 349

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 208/344 (60%), Positives = 272/344 (79%), Gaps = 8/344 (2%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 6   PDREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 64  IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 124 GEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FIN +R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+
Sbjct: 184 LNNSGTTAIFINALREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG
Sbjct: 244 TRVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLV------ADSLLQEPA 347
           +EN++ FL EN ++A  IE  +++  G+       AD +L  P 
Sbjct: 304 KENARKFLLENTDVANEIEKKIKEKLGIGAVVTAEADDVLPAPV 347


>gi|167037603|ref|YP_001665181.1| recombinase A [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167040264|ref|YP_001663249.1| recombinase A [Thermoanaerobacter sp. X514]
 gi|256750811|ref|ZP_05491696.1| recA protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914348|ref|ZP_07131664.1| recA protein [Thermoanaerobacter sp. X561]
 gi|307724416|ref|YP_003904167.1| recA protein [Thermoanaerobacter sp. X513]
 gi|320116018|ref|YP_004186177.1| recA protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166854504|gb|ABY92913.1| recA protein [Thermoanaerobacter sp. X514]
 gi|166856437|gb|ABY94845.1| recA protein [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256750394|gb|EEU63413.1| recA protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889283|gb|EFK84429.1| recA protein [Thermoanaerobacter sp. X561]
 gi|307581477|gb|ADN54876.1| recA protein [Thermoanaerobacter sp. X513]
 gi|319929109|gb|ADV79794.1| recA protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 341

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 215/343 (62%), Positives = 278/343 (81%), Gaps = 2/343 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           +++K KALE A+SQI+R +GKG+IM+LG    +   +EV+ +GSL LDIALG+GG P+GR
Sbjct: 1   MIEKQKALEMAISQIERQFGKGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EI+GPESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPD
Sbjct: 59  IIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL  
Sbjct: 119 TGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
             S+SK I+VFINQ+R K+GV+FG+PETT GG ALKFY+++RLD+R+V +IK  + I GN
Sbjct: 179 VTSKSKTIVVFINQLREKVGVLFGNPETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D+G    I++KSGAW+S+   RLGQ
Sbjct: 239 RTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILDIGTSIDIIEKSGAWYSYGDIRLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           GREN+K FL+EN EIA+ IE  +R+N  L  + +   P    +
Sbjct: 299 GRENAKQFLKENKEIADEIERKIRENFNLAYNKIKSSPDAIVE 341


>gi|255264284|ref|ZP_05343626.1| protein RecA [Thalassiobium sp. R2A62]
 gi|255106619|gb|EET49293.1| protein RecA [Thalassiobium sp. R2A62]
          Length = 362

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 241/349 (69%), Positives = 285/349 (81%), Gaps = 1/349 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
            +    DK KAL++AL+QI+R +GKG+IM+LG + +I E IE  S+GSLGLDIALGIGG 
Sbjct: 10  TDKKSADKQKALDSALAQIERQFGKGSIMKLGGENAIQE-IESTSTGSLGLDIALGIGGI 68

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGR+VEIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YARKLGV+L  LLI
Sbjct: 69  PKGRVVEIYGPESSGKTTLTLHCVAEEQKKGGVCAFVDAEHALDPQYARKLGVNLDELLI 128

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D LVRSGAV +IV+DSVAALTP++E+EGDMG+S  G+ ARLMSQA+R
Sbjct: 129 SQPDTGEQALEIVDTLVRSGAVSMIVVDSVAALTPKSELEGDMGDSSVGVHARLMSQAMR 188

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT SI+R+ C ++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++KD+D 
Sbjct: 189 KLTGSINRTNCTVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGALKDRDE 248

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + GN TRVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGVKA IVDKSGAWFS+  +
Sbjct: 249 VVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVKAGIVDKSGAWFSYGDE 308

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           R+GQGREN+K +L+EN   A  IE  +R   GL  +    E   +   D
Sbjct: 309 RIGQGRENAKTYLKENTRTALEIEDKIRAAHGLDFEMPEAERVEDDGSD 357


>gi|289578367|ref|YP_003476994.1| recA protein [Thermoanaerobacter italicus Ab9]
 gi|297544644|ref|YP_003676946.1| recA protein [Thermoanaerobacter mathranii subsp. mathranii str.
           A3]
 gi|289528080|gb|ADD02432.1| recA protein [Thermoanaerobacter italicus Ab9]
 gi|296842419|gb|ADH60935.1| recA protein [Thermoanaerobacter mathranii subsp. mathranii str.
           A3]
          Length = 341

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 215/338 (63%), Positives = 276/338 (81%), Gaps = 2/338 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           +++K KALE A+SQI+R +GKG+IM+LG    +   +EV+ +GSL LDIALG+GG P+GR
Sbjct: 1   MIEKQKALEMAISQIERQFGKGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EI+GPESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPD
Sbjct: 59  IIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL  
Sbjct: 119 TGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
             S+SK I+VFINQ+R K+G+MFG+PETT GG ALKFY+++RLD+R+V  IK  + I GN
Sbjct: 179 VTSKSKTIVVFINQLREKVGIMFGNPETTPGGRALKFYATIRLDVRKVDPIKQGNEIVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D+G    I++KSGAW+S+   RLGQ
Sbjct: 239 RTRVKVVKNKVAPPFKQAEFDIMYGEGISREGSILDIGTSIDIIEKSGAWYSYGDIRLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           GREN+K FL+EN EIA+ IE  +R+N  L  + +   P
Sbjct: 299 GRENAKQFLKENKEIADEIERKIRENFNLAYNKITSSP 336


>gi|92117166|ref|YP_576895.1| recombinase A [Nitrobacter hamburgensis X14]
 gi|123083700|sp|Q1QMW2|RECA_NITHX RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|91800060|gb|ABE62435.1| RecA protein [Nitrobacter hamburgensis X14]
          Length = 362

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 247/353 (69%), Positives = 299/353 (84%), Gaps = 1/353 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DKSKAL AALSQI+R +GKG++M+LG        IEV+SSGSLGLDIALG+GG P
Sbjct: 10  EGSSMDKSKALSAALSQIERQFGKGSVMKLGKNDKSM-DIEVISSGSLGLDIALGVGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD IYARKLGV + +LLIS
Sbjct: 69  KGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPIYARKLGVKVDDLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI D LVRSGAVD+++IDSVAAL PRAE+EG+MG++LPG+QARLMSQALRK
Sbjct: 129 QPDHGEQALEIADTLVRSGAVDVLIIDSVAALVPRAELEGEMGDALPGLQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SI++S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D +
Sbjct: 189 LTASINKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYGEGIS  GE++DLGVKA IV+KSGAWFS   QR
Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGEGISKMGEILDLGVKAGIVEKSGAWFSHDSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           +GQGREN+K FLR N +I   IE  +RQN+GL+A+ +L        D  +  +
Sbjct: 309 MGQGRENAKAFLRANPDITAKIEVAIRQNSGLLAEQILVGSPERDADGEEPAE 361


>gi|291301648|ref|YP_003512926.1| recA protein [Stackebrandtia nassauensis DSM 44728]
 gi|290570868|gb|ADD43833.1| recA protein [Stackebrandtia nassauensis DSM 44728]
          Length = 349

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 207/347 (59%), Positives = 267/347 (76%), Gaps = 2/347 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             DK+KAL+ AL+QI + +GKG++M+LG +  +   I+ + +GS+ LD+ALGIGG P+GR
Sbjct: 4   TPDKTKALDLALAQIDKQFGKGSVMKLGERPKV--DIKAIPTGSIALDVALGIGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPE+SGKT+LALH IA  Q  GG  A VDAEHALD +YA  LGV+   LL+SQPD
Sbjct: 62  IIEIYGPEASGKTSLALHAIANVQAEGGIAAIVDAEHALDPVYAGNLGVNTDELLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DMLVRSGAVD+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T 
Sbjct: 122 TGEQALEIADMLVRSGAVDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            ++ +    +FINQ+R K+GV FGSPETT+GG ALKFY+SVRLDIRR+ ++KD     GN
Sbjct: 182 GLNNTGTTAIFINQLREKVGVFFGSPETTSGGKALKFYASVRLDIRRIETMKDGGEAVGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++SPF+Q EFDI+YGEGIS  G LIDLGV+  IV KSGAW++++G +LGQ
Sbjct: 242 RTRVKVVKNKVSSPFRQAEFDILYGEGISREGSLIDLGVEEGIVRKSGAWYTYEGDQLGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           G+E  + FL+EN ++A  IE  +++  G+   S      + T+   D
Sbjct: 302 GKEKVRAFLKENPDLANEIEKKIKEKLGVGVTSEGDTEVVATEPPVD 348


>gi|229544364|ref|ZP_04433423.1| recA protein [Bacillus coagulans 36D1]
 gi|229325503|gb|EEN91179.1| recA protein [Bacillus coagulans 36D1]
          Length = 355

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 208/357 (58%), Positives = 275/357 (77%), Gaps = 4/357 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+ +AL+ AL QI++ +GKG+IM+LG Q      +  + +GSL LDIALG+GG+P+GR
Sbjct: 1   MNDRQEALDKALKQIEKQFGKGSIMRLGEQTDRV--VSTIPTGSLALDIALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EIYGPESSGKTT+ALH IA+ Q  GG  AF+DAEHALD +YA+KLGV++  LL+SQPD
Sbjct: 59  VIEIYGPESSGKTTVALHAIAEVQAQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDI+V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDIVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++S  I +FINQ+R K+GVMFG+PE T GG ALKFYSSVRL++RR   IK    I GN
Sbjct: 179 AINKSNTIAIFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQIKQGSDIVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK+A PFK  E DIMYGEGIS  GE++D+G    I+ KSGAW+++ G+RLGQ
Sbjct: 239 KTKIKVVKNKVAPPFKTAEVDIMYGEGISKEGEIVDMGSDLDIIQKSGAWYAYNGERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVAD--SLLQEPAINTKDDADKDDTDNVE 363
           GREN+K FL+EN ++   I + +R++  L  D  S   E AI+ ++  +  +  N+E
Sbjct: 299 GRENAKQFLKENADLKNEIAAKIREHYDLTEDAGSHETEKAIDEQEAVEGQEELNLE 355


>gi|326384499|ref|ZP_08206179.1| recombinase A [Gordonia neofelifaecis NRRL B-59395]
 gi|326196844|gb|EGD54038.1| recombinase A [Gordonia neofelifaecis NRRL B-59395]
          Length = 347

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 211/345 (61%), Positives = 266/345 (77%), Gaps = 7/345 (2%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
            + D+ KAL+ AL+QI + +GKG++M+LG        +EV+ +GS+ LDIALGIGG P+G
Sbjct: 3   PVTDRQKALDLALAQIDKNFGKGSVMRLGEDAR--PPMEVIPTGSVALDIALGIGGLPRG 60

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVE+YGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA KLGVD+  LL+SQP
Sbjct: 61  RIVEVYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAAKLGVDIDALLVSQP 120

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI DML+RSGA+DI+VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T
Sbjct: 121 DTGEQALEIADMLIRSGALDILVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMT 180

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           S ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD     G
Sbjct: 181 SGLNNSNTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVG 240

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+TRVKVVKNK+A PFKQ EFDI+YG GIS  G LIDLGV    + KSG+WF+++G +LG
Sbjct: 241 NRTRVKVVKNKVAPPFKQAEFDILYGHGISREGSLIDLGVAEGFIRKSGSWFTYEGDQLG 300

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLV-----ADSLLQEPA 347
           QG+EN++ FL  N ++A  IE  ++   G+      AD +  EP 
Sbjct: 301 QGKENARKFLIANPDVANEIEDKIKDKLGIGRPPADADEIAPEPV 345


>gi|119383349|ref|YP_914405.1| recombinase A [Paracoccus denitrificans PD1222]
 gi|119373116|gb|ABL68709.1| recA protein [Paracoccus denitrificans PD1222]
          Length = 356

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 235/348 (67%), Positives = 286/348 (82%), Gaps = 1/348 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
            +    DK KAL++AL+QI+R +GKG+IM+LG+   + E IE  S+GSLGLDIALGIGG 
Sbjct: 10  NDKRSADKQKALDSALAQIERQFGKGSIMKLGADNPVAE-IEATSTGSLGLDIALGIGGL 68

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EI+GPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YA+KLGV+L  LLI
Sbjct: 69  PKGRIIEIFGPESSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLI 128

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D LVRSGAV ++V+DSVAALTP++EIEGDMG+   G QARLMSQA+R
Sbjct: 129 SQPDTGEQALEIVDTLVRSGAVSLVVVDSVAALTPKSEIEGDMGDMQMGSQARLMSQAMR 188

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT+SI RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR GSIKD+D 
Sbjct: 189 KLTASIGRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRAGSIKDRDE 248

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           +TGN TRVKVVKNK+A PF+QVEFDIMYGEGIS  GELIDLG+KA +V+KSG+W+S+  +
Sbjct: 249 VTGNATRVKVVKNKVAPPFRQVEFDIMYGEGISKVGELIDLGIKAGVVEKSGSWYSYGDE 308

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           R+GQGREN+K FLR++ ++A  IE  +R + GL          +  +D
Sbjct: 309 RIGQGRENAKQFLRDHPDMAHAIEDKIRASHGLDFGVADDGDEVMAED 356


>gi|148273206|ref|YP_001222767.1| recombinase A [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
 gi|166220639|sp|A5CSL7|RECA_CLAM3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|147831136|emb|CAN02088.1| recombinase A [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
          Length = 362

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 213/334 (63%), Positives = 263/334 (78%), Gaps = 2/334 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +  D+ K+LE AL+QI R +GKG++M+LGS       + V+ +GS+ LD+ALGIGG P+G
Sbjct: 3   SSADREKSLETALAQIDRQFGKGSVMRLGSDERA--PVAVIPTGSVALDVALGIGGLPRG 60

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTL LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQP
Sbjct: 61  RIVEIYGPESSGKTTLTLHAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQP 120

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI DMLVRSG++D++VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT
Sbjct: 121 DTGEQALEIADMLVRSGSIDLVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLT 180

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
             +++++  ++FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     G
Sbjct: 181 GGLNQTQTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVG 240

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+TRVKVVKNKMA PFKQ EFDI+YG GIS  G LID GV+  IV KSGAW+++ G +LG
Sbjct: 241 NRTRVKVVKNKMAPPFKQAEFDILYGTGISREGSLIDFGVEHEIVRKSGAWYTYDGDQLG 300

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           QG+ENS+  L  N EIA  IE  ++   GLV D 
Sbjct: 301 QGKENSRKHLLNNPEIAAEIEQKIKVKLGLVKDP 334


>gi|126735783|ref|ZP_01751528.1| recA protein [Roseobacter sp. CCS2]
 gi|126714970|gb|EBA11836.1| recA protein [Roseobacter sp. CCS2]
          Length = 360

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 245/353 (69%), Positives = 289/353 (81%), Gaps = 6/353 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
            +    DK KALE+AL+QI+R +GKG+IM+LG +  + E IE  S+GSLGLDIALGIGG 
Sbjct: 10  TDKKTADKEKALESALAQIERQFGKGSIMKLGGENKMPE-IEATSTGSLGLDIALGIGGL 68

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGR++EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD  YA+KLGV+L  LLI
Sbjct: 69  PKGRVIEIYGPESSGKTTLTLHAIAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLI 128

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D LVRSGAV+++++DSVAALTP++E+EGDMG+S  G+ ARLMSQA+R
Sbjct: 129 SQPDTGEQALEIVDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSSVGVHARLMSQAMR 188

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT SI+RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D 
Sbjct: 189 KLTGSINRSGCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDE 248

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + GN TRVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGVKA +V+KSGAWFS+  +
Sbjct: 249 VVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVKAGVVEKSGAWFSYGDE 308

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           R+GQGRENSKIFLREN  IA  IE  +R   GL  D           DD D D
Sbjct: 309 RIGQGRENSKIFLRENQSIALEIEDKIRAAHGLDFDLPEGNH-----DDGDDD 356


>gi|212639361|ref|YP_002315881.1| RecA/RadA recombinase (multifunctional SOS repair regulator)
           [Anoxybacillus flavithermus WK1]
 gi|212560841|gb|ACJ33896.1| RecA/RadA recombinase (multifunctional SOS repair regulator)
           [Anoxybacillus flavithermus WK1]
          Length = 391

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 214/350 (61%), Positives = 273/350 (78%), Gaps = 2/350 (0%)

Query: 3   YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
           Y+  +++ D+  ALE AL QI++ +GKG+IM+LG Q      I  VSSGSL LDIALG+G
Sbjct: 41  YKGGVSLNDRQAALEQALKQIEKQFGKGSIMKLGEQTD--RQISTVSSGSLALDIALGVG 98

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G+P+GRI+EIYGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD +YA KLGV++  L
Sbjct: 99  GYPRGRIIEIYGPESSGKTTVALHAIAEVQKQGGQAAFIDAEHALDPVYAEKLGVNIDEL 158

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           L+SQPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEIEG+MG++  G+QARLMSQA
Sbjct: 159 LLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDAHVGLQARLMSQA 218

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           LRKL+ +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRL++RR   IK  
Sbjct: 219 LRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYASVRLEVRRAEQIKQG 278

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           + + GN+T++KVVKNK+A PFK  + DIMYGEGIS  GE+ID+G +  I+ KSGAW+S+K
Sbjct: 279 NDMVGNKTKIKVVKNKVAPPFKTADVDIMYGEGISKEGEIIDMGAELDIIQKSGAWYSYK 338

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
            +RLGQGREN+K FL+EN  I E I   +RQ+ G+   +       +  D
Sbjct: 339 DERLGQGRENAKQFLKENPHIMEEIAREIRQHYGITTGASATPVREDDLD 388


>gi|307264935|ref|ZP_07546497.1| recA protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|326389417|ref|ZP_08210984.1| recA protein [Thermoanaerobacter ethanolicus JW 200]
 gi|306920193|gb|EFN50405.1| recA protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|325994422|gb|EGD52847.1| recA protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 341

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 216/343 (62%), Positives = 278/343 (81%), Gaps = 2/343 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           +++K KALE A+SQI+R +GKG+IM+LG    +   +EV+ +GSL LDIALG+GG P+GR
Sbjct: 1   MIEKQKALEMAISQIERQFGKGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EI+GPESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPD
Sbjct: 59  IIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL  
Sbjct: 119 TGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
             S+SK I+VFINQ+R K+GVMFG+PETT GG ALKFY+++RLD+R+V +IK  + I GN
Sbjct: 179 VTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D+G    I++KSGAW+S+   RLGQ
Sbjct: 239 RTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILDIGTSIDIIEKSGAWYSYGDIRLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           GREN+K FL+EN EIA+ IE  +R+N  L  + +   P    +
Sbjct: 299 GRENAKQFLKENKEIADEIERKIRENFNLAYNKIKSSPDAIVE 341


>gi|269795614|ref|YP_003315069.1| protein RecA [Sanguibacter keddieii DSM 10542]
 gi|269097799|gb|ACZ22235.1| protein RecA [Sanguibacter keddieii DSM 10542]
          Length = 359

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 212/330 (64%), Positives = 267/330 (80%), Gaps = 2/330 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALEAAL+QI R +GKG+IM+LG  G     +EV+ +GS+ LDIALGIGG P+GR+
Sbjct: 5   ADREKALEAALAQIDRNFGKGSIMRLGEDGRA--PVEVIPTGSIALDIALGIGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VE+YGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA+KLGVD   LL+SQPDT
Sbjct: 63  VEVYGPESSGKTTVALHAVASAQRNGGIAAFIDAEHALDPDYAKKLGVDTDALLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 123 GEQALEIADMLIRSGAIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +S S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++K+     GN+
Sbjct: 183 LSSSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDIRRIETLKEGTEPVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQ EFDI+YG GIS  G LID+GV+   V KSG+WF++ G +LGQG
Sbjct: 243 TRVKVVKNKMAPPFKQAEFDILYGHGISREGGLIDMGVEHGFVRKSGSWFTYDGDQLGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +EN++ FL++N ++A  +E  +++  G+ A
Sbjct: 303 KENARTFLKDNPDLANELEKRIKEKLGVGA 332


>gi|237749552|ref|ZP_04580032.1| recA [Oxalobacter formigenes OXCC13]
 gi|229380914|gb|EEO31005.1| recA [Oxalobacter formigenes OXCC13]
          Length = 353

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 225/352 (63%), Positives = 289/352 (82%), Gaps = 1/352 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD  K  +  +K+KAL AAL+QI++ +GKG++M++   G + E I  VS+GSLGLDIALG
Sbjct: 1   MDDNKNASNQEKNKALSAALAQIEKQFGKGSVMRMA-PGVVVEEIPSVSTGSLGLDIALG 59

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG P+GR++EIYGPESSGKTTL L  IA+ QK GGTCAF+DAEHALD  YA+KLGV L+
Sbjct: 60  VGGLPRGRVIEIYGPESSGKTTLTLQVIAEMQKLGGTCAFIDAEHALDVGYAQKLGVHLQ 119

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +LLISQPDTGEQALEITD LVRSG VD+IVIDSVAALTP+AEIEGDMG+SLPG+QARLMS
Sbjct: 120 DLLISQPDTGEQALEITDALVRSGGVDLIVIDSVAALTPKAEIEGDMGDSLPGLQARLMS 179

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT SI+++   ++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR GSIK
Sbjct: 180 QALRKLTGSINKTNTSVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSIK 239

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             D + G++TRVKVVKNK A PFK+  FDI+YGEG S  GE++DLG +A IVDK+GAW+S
Sbjct: 240 SGDEVIGSETRVKVVKNKTAPPFKEAYFDILYGEGTSREGEILDLGSEAKIVDKAGAWYS 299

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           + G+++GQG++N++ +LR N ++A  IE+ +R + G+     +++   + ++
Sbjct: 300 YNGEKIGQGKDNARNYLRANPKLAREIENKVRASYGVRELPPIKDKEESAEE 351


>gi|241762016|ref|ZP_04760100.1| recA protein [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|283856414|ref|YP_162901.2| recombinase A [Zymomonas mobilis subsp. mobilis ZM4]
 gi|292495071|sp|Q9X5D8|RECA_ZYMMO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|241373482|gb|EER63069.1| recA protein [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|283775414|gb|AAV89790.2| recA protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 354

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 242/337 (71%), Positives = 291/337 (86%), Gaps = 2/337 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N +DK KALEAAL+QI R +GKG++M+LGS+  I   I+ +SSGSLGLDIALGIGG P+G
Sbjct: 14  NNMDKQKALEAALAQIDRAFGKGSVMRLGSREKI--EIDTISSGSLGLDIALGIGGLPRG 71

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+KLGV+  +L++SQP
Sbjct: 72  RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFVDAEHALDPVYAKKLGVNTDDLIVSQP 131

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEITD L+RS AVDI+V+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T
Sbjct: 132 DTGEQALEITDTLIRSNAVDILVVDSVAALTPRAEIEGEMGDSHVGLQARLMSQALRKIT 191

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            SI+RS+ +++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRRVG IKD+D I G
Sbjct: 192 GSINRSQTLVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRVGQIKDRDEIVG 251

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N TRVKVVKNK+A PFKQVEFDIMYGEG+S  GE++DLGVKA I+DKSG+WFS    R+G
Sbjct: 252 NATRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIIDKSGSWFSHDSVRIG 311

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
           QGREN+K FLRE+ E+ E IE ++R N   +AD +L 
Sbjct: 312 QGRENAKTFLREHPEMTEKIEKMIRHNTAEIADEMLD 348


>gi|297559643|ref|YP_003678617.1| recA protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296844091|gb|ADH66111.1| recA protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 378

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 206/331 (62%), Positives = 266/331 (80%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KALE AL+QI+R +GKG+IM+LG        +E + +G++ LD+ALGIGG P+
Sbjct: 1   MASGDRDKALETALAQIERQFGKGSIMRLGDDDR--PPVESIPTGAIALDVALGIGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHALD  YA+K+GV+  +LL+SQ
Sbjct: 59  GRVVEIYGPESSGKTTVALHAVASAQRMGGIAAFVDAEHALDPEYAKKIGVNTDDLLLSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI DML+RSGAV IIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDTGEQALEIVDMLIRSGAVSIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
             ++ ++    +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     
Sbjct: 179 AGALHQTNTTAIFINQLREKVGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDI+YG G+S  G LIDLGV+  IV KSGAW++++G +L
Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGVGVSREGSLIDLGVEHGIVRKSGAWYTYEGTQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQG+EN++ FLREN ++A  +E  +++  G+
Sbjct: 299 GQGKENARNFLRENADMANEVEKKIKEKLGV 329


>gi|254692312|emb|CBA10404.1| recombinase A [Agrobacterium larrymoorei]
          Length = 323

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 254/322 (78%), Positives = 293/322 (90%), Gaps = 1/322 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVIE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SK +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ
Sbjct: 182 ISKSKTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQ 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLL 331
           REN+K FLR+N  +A  IE  L
Sbjct: 302 RENAKGFLRDNPAVANEIEMAL 323


>gi|198283178|ref|YP_002219499.1| recA protein [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665991|ref|YP_002425407.1| recA protein [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|226723623|sp|B5EQ47|RECA_ACIF5 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226737749|sp|B7J7A9|RECA_ACIF2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|198247699|gb|ACH83292.1| recA protein [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518204|gb|ACK78790.1| recA protein [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 345

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 233/340 (68%), Positives = 283/340 (83%), Gaps = 4/340 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +SKAL AALSQI + +GKGA+M+LG   +I + IEV S+GSLGLD+ALG+GG P+GR+VE
Sbjct: 5   RSKALSAALSQIDKQFGKGAVMRLGDHNAI-KDIEVYSTGSLGLDLALGVGGLPRGRVVE 63

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA  Q  GGT AF+DAEHALD  YA KLGVDL+NLLISQPDTGE
Sbjct: 64  IYGPESSGKTTLTLHAIASCQAAGGTAAFIDAEHALDPGYAHKLGVDLENLLISQPDTGE 123

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DMLVRSGAVD+IVIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT++IS
Sbjct: 124 QALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTANIS 183

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           R+  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK  D + GN TR
Sbjct: 184 RTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKKSDEVVGNDTR 243

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF++ EF I YGEGIS   EL+DLGVK  IV+KSGAW+S++G+R+GQG++
Sbjct: 244 VKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVKFDIVEKSGAWYSYQGERIGQGKD 303

Query: 312 NSKIFLRENIEIAENIESLLRQNAG---LVADSLLQEPAI 348
           N++ +L+E+ E+A NIE  +R  A    L     + EPA 
Sbjct: 304 NARQYLKEHPELAANIEQRIRAAAAGHPLAFAEEVAEPAA 343


>gi|84517389|ref|ZP_01004742.1| recombinase A [Loktanella vestfoldensis SKA53]
 gi|84508753|gb|EAQ05217.1| recombinase A [Loktanella vestfoldensis SKA53]
          Length = 359

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 240/346 (69%), Positives = 287/346 (82%), Gaps = 1/346 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           +    DK KALE+AL+QI+R +GKG+IM+LG Q  + E IE  S+GSLGLDIALGIGG P
Sbjct: 11  DKKTADKEKALESALAQIERQFGKGSIMKLGGQNQMPE-IEATSTGSLGLDIALGIGGLP 69

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR++EIYGPESSGKTTL LH+IA+ QK GG CAFVDAEHALD  YA+KLGV+L  LLIS
Sbjct: 70  KGRVIEIYGPESSGKTTLTLHSIAEEQKKGGICAFVDAEHALDPQYAKKLGVNLDELLIS 129

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEI D LVRSGAV ++V+DSVAALTP++E+EGDMG+S  G+ ARLMSQA+RK
Sbjct: 130 QPDTGEQALEIVDTLVRSGAVSLVVVDSVAALTPKSELEGDMGDSSVGVHARLMSQAMRK 189

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SI+RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D +
Sbjct: 190 LTGSINRSGCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDEV 249

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN TRVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGVKA +V+KSGAWFS+  +R
Sbjct: 250 VGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKTGELLDLGVKAGVVEKSGAWFSYGDER 309

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           +GQGRENSK+FL+EN +IA  IE  +R   GL       +   +  
Sbjct: 310 IGQGRENSKLFLKENPKIANEIEDKIRAAHGLEFAMSDSDGPADDD 355


>gi|3219852|sp|P95469|RECA_PARDE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|1825468|gb|AAB51561.1| recA [Paracoccus denitrificans]
          Length = 356

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 234/348 (67%), Positives = 285/348 (81%), Gaps = 1/348 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
            +    DK KAL++AL+QI+R +GKG+IM+LG+   + E IE  S+GSLGLDIALGIGG 
Sbjct: 10  NDKRSADKQKALDSALAQIERQFGKGSIMKLGADNPVAE-IEATSTGSLGLDIALGIGGL 68

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EI+GPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YA+KLGV+L  LLI
Sbjct: 69  PKGRIIEIFGPESSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLI 128

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D LV SGAV ++V+DSVAALTP++EIEGDMG+   G QARLMSQA+R
Sbjct: 129 SQPDTGEQALEIVDTLVASGAVSLVVVDSVAALTPKSEIEGDMGDMQMGSQARLMSQAMR 188

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT+SI RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR GSIKD+D 
Sbjct: 189 KLTASIGRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRAGSIKDRDE 248

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           +TGN TRVKVVKNK+A PF+QVEFDIMYGEGIS  GELIDLG+KA +V+KSG+W+S+  +
Sbjct: 249 VTGNATRVKVVKNKVAPPFRQVEFDIMYGEGISKVGELIDLGIKAGVVEKSGSWYSYGDE 308

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           R+GQGREN+K FLR++ ++A  IE  +R + GL          +  +D
Sbjct: 309 RIGQGRENAKQFLRDHPDMAHAIEDKIRASHGLDFGVADDGDEVMAED 356


>gi|149184397|ref|ZP_01862715.1| recombinase A [Erythrobacter sp. SD-21]
 gi|148831717|gb|EDL50150.1| recombinase A [Erythrobacter sp. SD-21]
          Length = 341

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 231/340 (67%), Positives = 287/340 (84%), Gaps = 2/340 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KAL+AAL+QI R +GKG+ M+LG + ++   +E +S+GSLGLDIALGIGG PKGR+
Sbjct: 3   ADRQKALDAALAQIDRAFGKGSAMKLGQKEAM--NVEAISTGSLGLDIALGIGGLPKGRV 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +E+YGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+KLGVD+  L++SQPDT
Sbjct: 61  IEVYGPESSGKTTLALHAIAEAQKAGGTAAFVDAEHALDPVYAKKLGVDVDELIVSQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRS A+DI+V+DSVAAL PRAEIEG+MG+S  G+QARLMSQ+LRKLT S
Sbjct: 121 GEQALEITDTLVRSNAIDILVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQSLRKLTGS 180

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I+RSKC+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD+D + GN 
Sbjct: 181 INRSKCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDRDEVIGNS 240

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEGIS  GE++DLGVKA +V+KSG+WFS+   R+GQG
Sbjct: 241 TRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGVVEKSGSWFSYDSVRIGQG 300

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
           REN+K FL+EN E+   +E+ +R     VA+ ++  P   
Sbjct: 301 RENAKTFLKENPEMCAKLEAAIRGKTDEVAEEMMAGPDAE 340


>gi|323692880|ref|ZP_08107105.1| recA [Clostridium symbiosum WAL-14673]
 gi|323503055|gb|EGB18892.1| recA [Clostridium symbiosum WAL-14673]
          Length = 364

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 217/350 (62%), Positives = 277/350 (79%), Gaps = 6/350 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN  DK KAL+AAL+QI++ YGKG++M+LG  G+    IE V +GSL LDIALG+GG PK
Sbjct: 1   MNRDDKMKALDAALTQIEKAYGKGSVMKLGDSGANMN-IETVPTGSLSLDIALGLGGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVE+YGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YAR +GVD+ NL ISQ
Sbjct: 60  GRIVEVYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYARNIGVDIDNLYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL
Sbjct: 120 PDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+ IS+S C ++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+RR+ ++K    + 
Sbjct: 180 TAVISKSNCTVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRRIETLKQGGEMI 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ RVKVVKNK+A PFK+ EFDIM+G+GIS  G+++DL  K  IV+KSGAW+++ G ++
Sbjct: 240 GNRVRVKVVKNKIAPPFKEAEFDIMFGKGISKEGDILDLAAKEDIVEKSGAWYAYNGSKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           GQGREN+K FL  N E+   IE+ +RQ  GL        PA +T +  DK
Sbjct: 300 GQGRENAKNFLLANQELCAEIETKVRQKYGLA-----DGPAGDTAEKKDK 344


>gi|315604454|ref|ZP_07879520.1| recombination protein A [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315314160|gb|EFU62211.1| recombination protein A [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 363

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 208/348 (59%), Positives = 270/348 (77%), Gaps = 3/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D++KALE ALSQI + +GKG++M+LG        ++V+ +GSL LD+ALGIGG P+GR++
Sbjct: 15  DRNKALEVALSQIDKQFGKGSVMRLGDDNR--PPVQVIPTGSLALDVALGIGGLPRGRVI 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +QK GG  AF+DAEHALD +YAR LGVD  +LL+SQPDTG
Sbjct: 73  EIYGPESSGKTTVALHAVASAQKAGGNAAFIDAEHALDPVYARALGVDTDSLLVSQPDTG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSG +DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 133 EQALEIADMLIRSGGIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S +    +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+  +  GN+T
Sbjct: 193 SATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKEAGAPVGNRT 252

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R KVVKNKMA PFKQ EFDI+YG+GIS  G +ID+GV+A IV KSG+WF++   +LGQG+
Sbjct: 253 RAKVVKNKMAPPFKQAEFDIVYGKGISREGSIIDMGVEAGIVRKSGSWFTYGDDQLGQGK 312

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD-DADKD 357
           EN + FL +N E+A  IE  +  + G+      + P+      D D+D
Sbjct: 313 ENVRQFLADNPELANEIEQKILLSLGIGDAPEPEAPSQEASAIDPDED 360


>gi|153826919|ref|ZP_01979586.1| recA protein [Vibrio cholerae MZO-2]
 gi|149739222|gb|EDM53490.1| recA protein [Vibrio cholerae MZO-2]
          Length = 412

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 211/354 (59%), Positives = 278/354 (78%), Gaps = 2/354 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           DY + +   +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG 
Sbjct: 53  DYPERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 110

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  
Sbjct: 111 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 170

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 171 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 230

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 231 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 290

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+
Sbjct: 291 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSY 350

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            G ++GQG+ N+  +L+EN EIA+ ++  LR+      +  L     +  DD +
Sbjct: 351 NGDKIGQGKANACKYLKENPEIAKTLDKKLREMLLNPENMQLIAETSSAADDVE 404


>gi|304404324|ref|ZP_07385986.1| recA protein [Paenibacillus curdlanolyticus YK9]
 gi|304347302|gb|EFM13134.1| recA protein [Paenibacillus curdlanolyticus YK9]
          Length = 353

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 220/354 (62%), Positives = 279/354 (78%), Gaps = 2/354 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  ALE AL QI++ +GKG+IM+LG    +   +E VSSG+L LDIALGIGGFP+GR
Sbjct: 1   MSDRRAALEMALRQIEKQFGKGSIMKLGESTHM--QVETVSSGALALDIALGIGGFPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++E+YGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD +YA KLGV++  LL+SQPD
Sbjct: 59  VIEVYGPESSGKTTVALHAIAEVQKMGGQAAFIDAEHALDPLYASKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDIIV+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +IS+SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+RR+ SIK  + + GN
Sbjct: 179 AISKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRRIESIKQGNDVVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TR+KVVKNK+A PFKQ E DIMYGEGIS  G +ID+G +  IV KSGAWFS+ G RLGQ
Sbjct: 239 RTRIKVVKNKVAPPFKQAEVDIMYGEGISREGSIIDIGTEHEIVQKSGAWFSYNGDRLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           GREN+K FL+++ ++A  IE  +RQ   L   ++        K+D ++ + D++
Sbjct: 299 GRENAKQFLKDHKDVAATIEQQIRQATQLSESAIQAATLAGEKEDEEEPNFDDL 352


>gi|154248001|ref|YP_001418959.1| recombinase A [Xanthobacter autotrophicus Py2]
 gi|154162086|gb|ABS69302.1| recA protein [Xanthobacter autotrophicus Py2]
          Length = 361

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 251/339 (74%), Positives = 301/339 (88%), Gaps = 1/339 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DK+KAL+AALSQI+R +GKG+IM+LG  G   E IE V +GSLGLDIA+GIGG P
Sbjct: 10  EGSSMDKTKALDAALSQIERHFGKGSIMRLGKGGKALE-IESVPTGSLGLDIAIGIGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR+VEI+GPESSGKTTLALHT+A++QK GGTCAF+DAEHALD IYARKLGV+L +LLIS
Sbjct: 69  KGRVVEIFGPESSGKTTLALHTVAEAQKRGGTCAFIDAEHALDPIYARKLGVNLDDLLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI D LVRSGA+D++V+DSVAALTPRAE++G+MG+S PGMQARLMSQALRK
Sbjct: 129 QPDAGEQALEIADTLVRSGAIDVLVVDSVAALTPRAELDGEMGDSQPGMQARLMSQALRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT+SIS+S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G IK++D +
Sbjct: 189 LTASISKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGMIKERDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGVKA +V+KSGAWFS   QR
Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGEGISKTGELLDLGVKAGVVEKSGAWFSHDSQR 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
           LGQGREN+K FL++N EIA  IE+ +RQNAGL+A+ +L 
Sbjct: 309 LGQGRENAKTFLKQNQEIAGRIEAAIRQNAGLIAEKILA 347


>gi|271963745|ref|YP_003337941.1| RecA protein [Streptosporangium roseum DSM 43021]
 gi|270506920|gb|ACZ85198.1| RecA protein [Streptosporangium roseum DSM 43021]
          Length = 366

 Score =  384 bits (987), Expect = e-105,   Method: Composition-based stats.
 Identities = 204/333 (61%), Positives = 265/333 (79%), Gaps = 2/333 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KALE AL+QI+R +GKG++M+LG +      IEV+ + S+ LD+ALGIGGFP+
Sbjct: 1   MAANDREKALETALAQIERQFGKGSVMRLGDETRA--PIEVIPTSSIALDVALGIGGFPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVE+YGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA+KLGVD   LL+SQ
Sbjct: 59  GRIVEVYGPESSGKTTVALHAVANAQRGGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI DML+RSGAVD++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDTGEQALEIADMLIRSGAVDLLVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKV 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
             +++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD     
Sbjct: 179 AGALNNTGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDIRRIETLKDGTEAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNKMA PF+  +FDI+YG GIS  G LID+GV+   V KSGAW++++G +L
Sbjct: 239 GNRTRVKVVKNKMAPPFRVADFDILYGIGISREGGLIDMGVEHGFVRKSGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           GQG+EN++ FL+ + ++A  IE  +++  G+  
Sbjct: 299 GQGKENARNFLKNHPDMANEIEKKIKEKLGIGP 331


>gi|120403410|ref|YP_953239.1| recombinase A [Mycobacterium vanbaalenii PYR-1]
 gi|166220658|sp|A1T7T3|RECA_MYCVP RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|119956228|gb|ABM13233.1| recA protein [Mycobacterium vanbaalenii PYR-1]
          Length = 350

 Score =  384 bits (987), Expect = e-105,   Method: Composition-based stats.
 Identities = 208/348 (59%), Positives = 273/348 (78%), Gaps = 11/348 (3%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE AL+QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 6   PDREKALELALAQIDKNFGKGSVMRLGEE--VRQPIAVIPTGSIALDVALGIGGLPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD   LL+SQPDT
Sbjct: 64  VEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAQKLGVDTDALLVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 124 GEQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+
Sbjct: 184 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF++ G++LGQG
Sbjct: 244 TRVKVVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVEHGFIRKSGSWFTYDGEQLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           +EN++ FL +N+++A  IE  +++  G+ A            DDA+ D
Sbjct: 304 KENARNFLLQNVDVANEIEKKIKEKLGIGA---------QLTDDANDD 342


>gi|254850782|ref|ZP_05240132.1| recombinase A recA [Vibrio cholerae MO10]
 gi|254846487|gb|EET24901.1| recombinase A recA [Vibrio cholerae MO10]
          Length = 412

 Score =  384 bits (987), Expect = e-105,   Method: Composition-based stats.
 Identities = 211/354 (59%), Positives = 278/354 (78%), Gaps = 2/354 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           DY + +   +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG 
Sbjct: 53  DYPERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 110

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  
Sbjct: 111 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 170

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 171 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 230

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 231 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 290

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+
Sbjct: 291 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSY 350

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            G ++GQG+ N+  +L+EN EIA+ ++  LR+      +  L     +  DD +
Sbjct: 351 NGDKIGQGKANACKYLKENPEIAKTLDKKLREMLLNPENMQLIAETSSAADDVE 404


>gi|159037027|ref|YP_001536280.1| recombinase A [Salinispora arenicola CNS-205]
 gi|189039604|sp|A8M7V5|RECA_SALAI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|157915862|gb|ABV97289.1| recA protein [Salinispora arenicola CNS-205]
          Length = 348

 Score =  384 bits (987), Expect = e-105,   Method: Composition-based stats.
 Identities = 204/327 (62%), Positives = 265/327 (81%), Gaps = 2/327 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+ +AL+ AL+QI + +GKG++M+LG +  +   +  V +GS+ LD+ALG+GG P+GR
Sbjct: 4   VPDRERALDLALAQIDKQFGKGSVMRLGERPVVQTAV--VPTGSIALDVALGVGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++E+YGPESSGKTT+ALH +A +Q+ GG  AFVDAEHALD  YAR LGVD   LL+SQPD
Sbjct: 62  VIEVYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHALDPEYARALGVDTDALLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DMLVRSGA+DII+IDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T 
Sbjct: 122 TGEQALEIADMLVRSGALDIIIIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ S+KD   + GN
Sbjct: 182 VLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDVRRIESLKDGTDVVGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A+PFKQ EFDIMYG+GIS  G LID+GV+ +I+ KSGAW++++G +LGQ
Sbjct: 242 RTRVKVVKNKVAAPFKQAEFDIMYGKGISREGSLIDVGVEQAIIRKSGAWYTYEGDQLGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNA 335
           G+E ++ FLREN ++A  IE  + +  
Sbjct: 302 GKEKAREFLRENPDVAAEIEKKILEKL 328


>gi|291525257|emb|CBK90844.1| protein RecA [Eubacterium rectale DSM 17629]
 gi|291529284|emb|CBK94870.1| protein RecA [Eubacterium rectale M104/1]
          Length = 350

 Score =  384 bits (987), Expect = e-105,   Method: Composition-based stats.
 Identities = 208/355 (58%), Positives = 276/355 (77%), Gaps = 5/355 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   DK KAL+AA++QI++ YGKG++M+LG   +    +E V +GSL LDIALG+GG PK
Sbjct: 1   MAKEDKLKALDAAIAQIEKQYGKGSVMKLGDNSANMN-VETVPTGSLSLDIALGLGGLPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E+YGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YAR +GVD+ NL ISQ
Sbjct: 60  GRIIEVYGPESSGKTTVALHCVAEVQKRGGIAGFIDAEHALDPVYARNIGVDIDNLYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT+ +VRSGAVDI+V+DSVAAL P+AEI+GDMG+S  G+QARLMSQALRKL
Sbjct: 120 PDCGEQALEITETMVRSGAVDIVVVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+ IS+S CI++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+RR  S+K    I 
Sbjct: 180 TAVISKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRRTESLKQGGEIV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN  RVKVVKNK+A PF++ EFDIM+G+GIS  G+++DL V A IV+KSGAW++++G ++
Sbjct: 240 GNHVRVKVVKNKIAPPFREAEFDIMFGQGISREGDVLDLAVNAGIVNKSGAWYAYEGDKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           GQGREN+K ++ EN    + +E+ +R       +    +     ++D++K + + 
Sbjct: 300 GQGRENAKTYIHENPAFFDMLEAKVRDFYFTQPE----DEDAAVQEDSEKSEAEE 350


>gi|238924585|ref|YP_002938101.1| RecA protein [Eubacterium rectale ATCC 33656]
 gi|238876260|gb|ACR75967.1| RecA protein [Eubacterium rectale ATCC 33656]
          Length = 350

 Score =  384 bits (987), Expect = e-105,   Method: Composition-based stats.
 Identities = 208/355 (58%), Positives = 276/355 (77%), Gaps = 5/355 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   DK KAL+AA++QI++ YGKG++M+LG   +    +E V +GSL LDIALG+GG PK
Sbjct: 1   MAKEDKLKALDAAIAQIEKQYGKGSVMKLGDNSANMN-VETVPTGSLSLDIALGLGGLPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E+YGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YAR +GVD+ NL ISQ
Sbjct: 60  GRIIEVYGPESSGKTTVALHCVAEVQKRGGIAGFIDAEHALDPVYARNIGVDIDNLYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT+ +VRSGAVDI+V+DSVAAL P+AEI+GDMG+S  G+QARLMSQALRKL
Sbjct: 120 PDCGEQALEITETMVRSGAVDIVVVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+ IS+S CI++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+RR  S+K    I 
Sbjct: 180 TAVISKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRRTESLKQGGEIV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN  RVKVVKNK+A PF++ EFDIM+G+GIS  G+++DL V A IV+KSGAW++++G ++
Sbjct: 240 GNHVRVKVVKNKIAPPFREAEFDIMFGQGISREGDVLDLAVNAGIVNKSGAWYAYEGDKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           GQGREN+K ++ EN    + +E+ +R       +    +     ++D++K + + 
Sbjct: 300 GQGRENAKTYIHENPAFFDMLEAKVRDFYFTQPE----DEDAAVQEDSEKPEAEE 350


>gi|84496893|ref|ZP_00995747.1| recombinase A [Janibacter sp. HTCC2649]
 gi|84383661|gb|EAP99542.1| recombinase A [Janibacter sp. HTCC2649]
          Length = 354

 Score =  384 bits (987), Expect = e-105,   Method: Composition-based stats.
 Identities = 207/332 (62%), Positives = 268/332 (80%), Gaps = 2/332 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  D+ K+L   L QI++ +GKGAIM+LG    +   IEV+ +GS+ LD+ALGIGG P+G
Sbjct: 9   NANDRDKSLGLVLGQIEKSHGKGAIMRLGDD--VRAPIEVIPTGSIALDVALGIGGLPRG 66

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA+KLGVD  NLL+SQP
Sbjct: 67  RVVEIYGPESSGKTTVALHAVASAQRAGGIAAFIDAEHALDPEYAKKLGVDTDNLLVSQP 126

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T
Sbjct: 127 DTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKIT 186

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     G
Sbjct: 187 GALSNTNTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDPVG 246

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V K+GAW++++G +LG
Sbjct: 247 NRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQLG 306

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           QG+EN++ FL++N ++++ +E  ++Q  G+  
Sbjct: 307 QGKENARAFLKDNPDLSDELEKKIKQKLGIGP 338


>gi|183981991|ref|YP_001850282.1| recombinase A RecA [Mycobacterium marinum M]
 gi|238690925|sp|B2HL06|RECA_MYCMM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|183175317|gb|ACC40427.1| recombinase A RecA [Mycobacterium marinum M]
          Length = 346

 Score =  384 bits (987), Expect = e-105,   Method: Composition-based stats.
 Identities = 206/342 (60%), Positives = 273/342 (79%), Gaps = 6/342 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI++ YGKG++M+LG +  + + I ++ +GS+ LD+ALGIGG P+GR+
Sbjct: 5   PDREKALELAMAQIEKSYGKGSVMRLGDE--VRQPISIIPTGSIALDVALGIGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 63  IEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T +
Sbjct: 123 GEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+
Sbjct: 183 LNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVK+VKNK++ PFKQ EFDI+YG GIS  G LID+GV    + KSGAWF+++G++LGQG
Sbjct: 243 TRVKIVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGAWFTYEGEQLGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVA----DSLLQEPA 347
           +EN++ FL EN E+A  IE  +++  G+ A    D +L  P 
Sbjct: 303 KENARNFLLENGEVANEIEKKIKEKLGIGAVVTDDGVLPAPV 344


>gi|154253020|ref|YP_001413844.1| recA protein [Parvibaculum lavamentivorans DS-1]
 gi|189039601|sp|A7HWA4|RECA_PARL1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|154156970|gb|ABS64187.1| recA protein [Parvibaculum lavamentivorans DS-1]
          Length = 365

 Score =  384 bits (987), Expect = e-105,   Method: Composition-based stats.
 Identities = 256/354 (72%), Positives = 303/354 (85%), Gaps = 1/354 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
            +  DK KAL+AALSQI+R +GKG+IM+LG    I E IE VS+GSLGLDIALGIGG P+
Sbjct: 10  KDDSDKKKALDAALSQIERSFGKGSIMRLGKNEQIVE-IESVSTGSLGLDIALGIGGLPR 68

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTTLAL T+A++QK+GG CAFVDAEHALD IYARKLGV L +LLISQ
Sbjct: 69  GRIIEIYGPESSGKTTLALQTVAEAQKSGGVCAFVDAEHALDPIYARKLGVQLDDLLISQ 128

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D LVRSGAVD++VIDSVAALTP+AE+EG+MG+SLPG+QARLMSQALRKL
Sbjct: 129 PDTGEQALEIADTLVRSGAVDVLVIDSVAALTPKAELEGEMGDSLPGLQARLMSQALRKL 188

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T SIS+S  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D + 
Sbjct: 189 TGSISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDEVV 248

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GNQTRVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLG KA IV+KSG+WFS+  QR+
Sbjct: 249 GNQTRVKVVKNKVAPPFKQVEFDIMYGEGISKMGELVDLGSKAGIVEKSGSWFSYNSQRI 308

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           GQGREN+K FLR+N E+A  IE+ +R NAGL+A+ ++  P      D D  D +
Sbjct: 309 GQGRENAKQFLRDNPEMAAEIEAAIRANAGLIAEKIMDVPGSERDGDEDAGDME 362


>gi|254291227|ref|ZP_04962023.1| recA protein [Vibrio cholerae AM-19226]
 gi|150422921|gb|EDN14872.1| recA protein [Vibrio cholerae AM-19226]
          Length = 412

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 211/354 (59%), Positives = 278/354 (78%), Gaps = 2/354 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           DY + +   +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG 
Sbjct: 53  DYPERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 110

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  
Sbjct: 111 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 170

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 171 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 230

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 231 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 290

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+
Sbjct: 291 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSY 350

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            G ++GQG+ N+  +L+EN EIA+ ++  LR+      +  L     +  DD +
Sbjct: 351 NGDKIGQGKANACKYLKENPEIAKTLDKKLREMLLNPENMQLIGETSSAADDVE 404


>gi|323483876|ref|ZP_08089253.1| recA [Clostridium symbiosum WAL-14163]
 gi|323402830|gb|EGA95151.1| recA [Clostridium symbiosum WAL-14163]
          Length = 364

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 215/357 (60%), Positives = 275/357 (77%), Gaps = 1/357 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN  DK KAL+AAL+QI++ YGKG++M+LG  G+    IE V +GSL LDIALG+GG PK
Sbjct: 1   MNRDDKMKALDAALTQIEKAYGKGSVMKLGDSGANMN-IETVPTGSLSLDIALGLGGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVE+YGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YAR +GVD+ NL ISQ
Sbjct: 60  GRIVEVYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYARNIGVDIDNLYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL
Sbjct: 120 PDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+ IS+S C ++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+RR+ ++K    + 
Sbjct: 180 TAVISKSNCTVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRRIETLKQGGEMI 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ RVKVVKNK+A PFK+ EFDIM+G+GIS  G+++DL  K  IV+KSGAW+++ G ++
Sbjct: 240 GNRVRVKVVKNKIAPPFKEAEFDIMFGKGISKEGDILDLAAKEDIVEKSGAWYAYNGSKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           GQGREN+K FL  N E+   IE+ +RQ  GL             K  A  +   + E
Sbjct: 300 GQGRENAKNFLLANQELCAEIETKVRQKYGLADGPAGDAAEKKDKGLAPVEKKADAE 356


>gi|121728559|ref|ZP_01681581.1| recA protein [Vibrio cholerae V52]
 gi|227080726|ref|YP_002809277.1| recA protein [Vibrio cholerae M66-2]
 gi|298500955|ref|ZP_07010756.1| recA protein [Vibrio cholerae MAK 757]
 gi|121629171|gb|EAX61612.1| recA protein [Vibrio cholerae V52]
 gi|227008614|gb|ACP04826.1| recA protein [Vibrio cholerae M66-2]
 gi|297540203|gb|EFH76263.1| recA protein [Vibrio cholerae MAK 757]
          Length = 412

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 211/354 (59%), Positives = 278/354 (78%), Gaps = 2/354 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           DY + +   +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG 
Sbjct: 53  DYPERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 110

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  
Sbjct: 111 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 170

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 171 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 230

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 231 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 290

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+
Sbjct: 291 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSY 350

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            G ++GQG+ N+  +L+EN EIA+ ++  LR+      +  L     +  DD +
Sbjct: 351 NGDKIGQGKANACKYLKENPEIAKTLDKKLREMLLNPENMQLIAETSSAADDVE 404


>gi|317121901|ref|YP_004101904.1| RecA protein [Thermaerobacter marianensis DSM 12885]
 gi|315591881|gb|ADU51177.1| RecA protein [Thermaerobacter marianensis DSM 12885]
          Length = 340

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 197/331 (59%), Positives = 265/331 (80%), Gaps = 1/331 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           ++++ +ALE ALSQI++ +GKG+IM++G   S    +EV+ +GSL LDIALG+GG P+GR
Sbjct: 1   MIERERALEIALSQIEKQFGKGSIMRMGEASSRLN-VEVIPTGSLALDIALGVGGMPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EI+GPE+SGKTT+ALH  A +Q+ GG  AF+DAEHALD +YA  LGVD+ NLLISQPD
Sbjct: 60  IIEIFGPEASGKTTVALHVAASAQRAGGVAAFIDAEHALDPVYAENLGVDINNLLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVD+IVIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKLT 
Sbjct: 120 TGEQALEIAEALVRSGAVDVIVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++S+  L+FINQ+R K+GVMFG+PE T GG ALKFY+SVRLD+RRV ++K    + G 
Sbjct: 180 AIAKSRTCLIFINQIREKVGVMFGNPEVTPGGRALKFYASVRLDVRRVETLKQGGEMIGI 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + R KVVKNK+A PF+Q EFD++YG+GIS  G+L+D+  +  I++KSGAW+S+   R+GQ
Sbjct: 240 RARAKVVKNKVAPPFRQAEFDLIYGKGISREGDLLDIATQHGIIEKSGAWYSYGDTRIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           GREN++ +L ++ E+A+ IE  +R+   L  
Sbjct: 300 GRENAREYLVQHPEVADAIEQRVRELLSLGG 330


>gi|94309411|ref|YP_582621.1| recombinase A [Cupriavidus metallidurans CH34]
 gi|123081425|sp|Q1LR74|RECA_RALME RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|93353263|gb|ABF07352.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Cupriavidus metallidurans CH34]
          Length = 353

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 230/353 (65%), Positives = 292/353 (82%), Gaps = 3/353 (0%)

Query: 1   MDYRKEMN--IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIA 58
           MD +K       +K KAL AALSQI++ +GKG+IM+LG  G I + I+VVS+GSLGLDIA
Sbjct: 1   MDDKKAGAGVSAEKQKALAAALSQIEKQFGKGSIMRLGD-GEIEQDIQVVSTGSLGLDIA 59

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGTCAF+DAEHALD  YA KLGVD
Sbjct: 60  LGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVQYAGKLGVD 119

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           + NLLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARL
Sbjct: 120 VGNLLISQPDTGEQALEITDALVRSGSIDLIVIDSVAALVPKAEIEGEMGDSLPGLQARL 179

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRKLT +I R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS
Sbjct: 180 MSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGS 239

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IK  D + GN+T+VKVVKNK++ PF++  FDI+YG+GIS  GE+IDLGV A IV+K+GAW
Sbjct: 240 IKKGDEVVGNETKVKVVKNKVSPPFREAFFDILYGQGISRQGEIIDLGVDAKIVEKAGAW 299

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           +S+ G+++GQG++N++ +LREN +IA+ IE+ +R   G+   + +       +
Sbjct: 300 YSYNGEKIGQGKDNAREYLRENPDIADEIENKVRLALGVAPLNTVAGAPAEVE 352


>gi|153829927|ref|ZP_01982594.1| recA protein [Vibrio cholerae 623-39]
 gi|297580678|ref|ZP_06942604.1| recombination protein recA [Vibrio cholerae RC385]
 gi|148874615|gb|EDL72750.1| recA protein [Vibrio cholerae 623-39]
 gi|297535094|gb|EFH73929.1| recombination protein recA [Vibrio cholerae RC385]
          Length = 412

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 211/354 (59%), Positives = 278/354 (78%), Gaps = 2/354 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           DY + +   +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG 
Sbjct: 53  DYPERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 110

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  
Sbjct: 111 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 170

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 171 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 230

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 231 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 290

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+
Sbjct: 291 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSY 350

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            G ++GQG+ N+  +L+EN EIA+ ++  LR+      +  L     +  DD +
Sbjct: 351 NGDKIGQGKANACKYLKENPEIAKTLDKKLREMLLNPENMQLIAETSSAADDVE 404


>gi|163736399|ref|ZP_02143818.1| recA protein [Phaeobacter gallaeciensis BS107]
 gi|163741066|ref|ZP_02148458.1| recombinase A [Phaeobacter gallaeciensis 2.10]
 gi|161385419|gb|EDQ09796.1| recombinase A [Phaeobacter gallaeciensis 2.10]
 gi|161390269|gb|EDQ14619.1| recA protein [Phaeobacter gallaeciensis BS107]
          Length = 355

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 242/340 (71%), Positives = 282/340 (82%), Gaps = 1/340 (0%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           +      DK KAL++AL+QI+R +GKG+IM+LG  G+    IE  S+GSLGLDIALGIGG
Sbjct: 8   KDNKKSGDKQKALDSALAQIERQFGKGSIMKLGD-GNPLNEIEASSTGSLGLDIALGIGG 66

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P GRIVEIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD  YA KLGVDL  LL
Sbjct: 67  LPMGRIVEIYGPESSGKTTLTLHCIAEQQKKGGVCAFVDAEHALDPQYAAKLGVDLDELL 126

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           ISQPDTGEQALEITD LVRSGAV+++++DSVAALTP++E+EGDMG+S  G+QARLMSQA+
Sbjct: 127 ISQPDTGEQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSSVGVQARLMSQAM 186

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D
Sbjct: 187 RKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRD 246

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN TRVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGV A +V KSGAWFS+  
Sbjct: 247 EVVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVAAGVVAKSGAWFSYGD 306

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343
           +R+GQGREN+K +LREN  IA +IE  +R   GL  D   
Sbjct: 307 ERIGQGRENAKTYLRENAHIAYDIEDKIRAAHGLEFDRPE 346


>gi|118442927|ref|YP_878196.1| recombinase A [Clostridium novyi NT]
 gi|166220640|sp|A0Q0P4|RECA_CLONN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|118133383|gb|ABK60427.1| recA protein [Clostridium novyi NT]
          Length = 350

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 216/352 (61%), Positives = 280/352 (79%), Gaps = 3/352 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN  +K KAL+AA++QI++ +GKG++M+LG +  +   +E +S+GSL LDIALGIGG P+
Sbjct: 1   MNN-EKMKALQAAITQIEKQFGKGSVMKLGEEHVL--NVEAISTGSLSLDIALGIGGIPR 57

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTT+ALH IA++QK+GGT AF+DAEHALD +YA+ LGVD+ NL++SQ
Sbjct: 58  GRIIEIFGPESSGKTTVALHIIAEAQKSGGTAAFIDAEHALDPVYAKALGVDIDNLIVSQ 117

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI + LVRSGA+D+IV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL
Sbjct: 118 PDTGEQALEICEALVRSGAIDVIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKL 177

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T SI++SKC  +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+R++ +IK  D   
Sbjct: 178 TGSINKSKCATIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRKIETIKQGDEFL 237

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G++TRVKVVKNK+A PFKQ EFDIMYG GISF G ++D+GV   I+ KSG+WFS+   RL
Sbjct: 238 GSRTRVKVVKNKVAPPFKQAEFDIMYGTGISFEGNVLDVGVDNEIIQKSGSWFSYNDTRL 297

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           GQGREN K FLREN  I   +E+ +R+   L   +         KD+  K++
Sbjct: 298 GQGRENVKQFLRENPSILLEVENKIREKHNLKTRNTADSKVTGAKDEKSKEE 349


>gi|312115731|ref|YP_004013327.1| recA protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311220860|gb|ADP72228.1| recA protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 378

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 247/336 (73%), Positives = 295/336 (87%), Gaps = 1/336 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           + +DK KALEAALSQI+R +GKG++M+LG    + E +E +S+GSLGLDIALGIGG P+G
Sbjct: 14  DSMDKQKALEAALSQIERNFGKGSVMRLGKNDKLVE-VEAISTGSLGLDIALGIGGLPRG 72

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R+VEI+GPESSGKTTLALH IA++QK GG+C FVDAEHALD  YARKLGV+L+ L+ISQP
Sbjct: 73  RVVEIFGPESSGKTTLALHVIAEAQKKGGSCGFVDAEHALDPGYARKLGVNLEELIISQP 132

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEITD LVRSGA+D+IV+DSVAALTP+AEIEG+MG+ LPGMQARLMSQALRKLT
Sbjct: 133 DAGEQALEITDTLVRSGAIDVIVVDSVAALTPKAEIEGEMGDVLPGMQARLMSQALRKLT 192

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            SIS+S C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G IK++D + G
Sbjct: 193 GSISKSNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGQIKERDEVVG 252

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           NQTRVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGVKA+IV+KSG+W+S   QR+G
Sbjct: 253 NQTRVKVVKNKVAPPFKQVEFDIMYGEGISKTGELVDLGVKANIVEKSGSWYSHDSQRIG 312

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343
           QGREN+K FLR N  +AE IE  +R NAGL+A  +L
Sbjct: 313 QGRENAKAFLRGNPLVAEAIEREIRANAGLIATKIL 348


>gi|254226848|ref|ZP_04920419.1| recA protein [Vibrio cholerae V51]
 gi|125620645|gb|EAZ49008.1| recA protein [Vibrio cholerae V51]
          Length = 412

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 211/354 (59%), Positives = 278/354 (78%), Gaps = 2/354 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           DY + +   +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG 
Sbjct: 53  DYPERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 110

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  
Sbjct: 111 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 170

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 171 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 230

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 231 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 290

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+
Sbjct: 291 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSY 350

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            G ++GQG+ N+  +L+EN EIA+ ++  LR+      +  L     +  DD +
Sbjct: 351 NGDKIGQGKANACKYLKENPEIAKTLDKKLREMLLNPENMQLISETSSAADDVE 404


>gi|226366160|ref|YP_002783943.1| recombinase A [Rhodococcus opacus B4]
 gi|254790443|sp|C1B381|RECA_RHOOB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226244650|dbj|BAH54998.1| RecA protein [Rhodococcus opacus B4]
          Length = 348

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 205/327 (62%), Positives = 265/327 (81%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+ AL+QI + +GKG++M+LG    + + I V+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 7   DRDKALDLALAQIDKNFGKGSVMRLGE--GVRQPIAVIPTGSISLDVALGIGGLPRGRVV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD   LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAQKLGVDTDALLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLIRSGALDILVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD     GN+T
Sbjct: 185 SNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+W++++G +LGQG+
Sbjct: 245 RVKVVKNKVAPPFKQAEFDILYGQGISKEGSLIDMGVEHGFIRKSGSWYTYEGDQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN++ FL EN +I + IE  +++  G+
Sbjct: 305 ENARKFLLENTDIRDEIEKKIKEKLGI 331


>gi|269956042|ref|YP_003325831.1| recA protein [Xylanimonas cellulosilytica DSM 15894]
 gi|269304723|gb|ACZ30273.1| recA protein [Xylanimonas cellulosilytica DSM 15894]
          Length = 376

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 207/328 (63%), Positives = 267/328 (81%), Gaps = 2/328 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALEAAL+QI R +GKG++M+LG +      +EV+ +GS+ LD+ALGIGG P+GR+
Sbjct: 5   ADREKALEAALAQIDRSFGKGSVMRLGEETRA--PVEVIPTGSIALDVALGIGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA+KLGVD   LL+SQPDT
Sbjct: 63  IEIYGPESSGKTTVALHAVASAQRAGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 123 GEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGV FGSPETTTGG ALKFY+SVRLDIRR+ ++K+     GN+
Sbjct: 183 LNSSGTSAIFINQLREKIGVFFGSPETTTGGKALKFYASVRLDIRRIETLKEGTEPVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQ EFDI+YG GIS  G LID+GV+  +V KSG+WF+++G +LGQG
Sbjct: 243 TRVKVVKNKMAPPFKQAEFDILYGVGISREGGLIDMGVEHGLVRKSGSWFTYEGDQLGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           +EN++ FLR+N ++A  IE  +++  G+
Sbjct: 303 KENARGFLRDNPDLANEIEKRIKEKLGV 330


>gi|20178057|sp|Q9APB2|RECA_CUPNE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|12659037|gb|AAK01164.1|AF312928_1 RecA [Cupriavidus necator]
          Length = 353

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 229/353 (64%), Positives = 291/353 (82%), Gaps = 3/353 (0%)

Query: 1   MDYRKEMN--IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIA 58
           MD +K       +K KAL AALSQI++ +GKG+IM+LG  G I + I+VVS+GSLGLDIA
Sbjct: 1   MDDKKAGAGVSAEKQKALAAALSQIEKQFGKGSIMRLGD-GEIEQDIQVVSTGSLGLDIA 59

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGTCAF+DAEHALD  YA KLGVD
Sbjct: 60  LGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVQYAGKLGVD 119

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           + NLLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARL
Sbjct: 120 VGNLLISQPDTGEQALEITDALVRSGSIDLIVIDSVAALVPKAEIEGEMGDSLPGLQARL 179

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQ LRKLT +I R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS
Sbjct: 180 MSQGLRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGS 239

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IK  D + GN+T+VKVVKNK++ PF++  FDI+YG+GIS  GE+IDLGV A IV+K+GAW
Sbjct: 240 IKKGDEVVGNETKVKVVKNKVSPPFREAFFDILYGQGISRQGEIIDLGVDAKIVEKAGAW 299

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           +S+ G+++GQG++N++ +LREN +IA+ IE+ +R   G+   + +       +
Sbjct: 300 YSYNGEKIGQGKDNAREYLRENPDIADEIENKVRLALGVAPLNTVAGAPAEVE 352


>gi|254419524|ref|ZP_05033248.1| protein RecA [Brevundimonas sp. BAL3]
 gi|196185701|gb|EDX80677.1| protein RecA [Brevundimonas sp. BAL3]
          Length = 359

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 235/350 (67%), Positives = 294/350 (84%), Gaps = 1/350 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
               DK +ALEAA++QI R +GKG++M+LG +G + + I  VS+GSLGLD+ALGIGG P+
Sbjct: 11  KEDGDKQRALEAAIAQIDRAFGKGSVMKLG-KGGVADVIPSVSTGSLGLDMALGIGGLPR 69

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++E++GPESSGKTTLALHT+A+ QK GGT AFVDAEHALD  YA+KLGV+L +LL+SQ
Sbjct: 70  GRVIEVFGPESSGKTTLALHTVAEVQKAGGTAAFVDAEHALDPGYAQKLGVNLDDLLVSQ 129

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D LVRSGAVDI+V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKL
Sbjct: 130 PDTGEQALEIVDTLVRSGAVDIVVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKL 189

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+SIS+S CI++FINQ+R KIGVM+GSPETTTGGNALKFY+SVRLDIRR G+IK++D + 
Sbjct: 190 TASISKSNCIVLFINQIRHKIGVMYGSPETTTGGNALKFYASVRLDIRRTGAIKNRDEVV 249

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN TRVKVVKNK+A PF++V FDIMYGEGIS  GE+IDLGVKA +++KSG+WFS+   R+
Sbjct: 250 GNTTRVKVVKNKVAPPFREVIFDIMYGEGISKLGEIIDLGVKAGVIEKSGSWFSYDSTRI 309

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           GQGREN + FL++N +IA +IE  +R +   +AD LL  P  +   D + 
Sbjct: 310 GQGRENVREFLKQNPDIAASIEKAVRASTSKIADELLGTPEPDEGQDLEG 359


>gi|302866030|ref|YP_003834667.1| recA protein [Micromonospora aurantiaca ATCC 27029]
 gi|315502590|ref|YP_004081477.1| reca protein [Micromonospora sp. L5]
 gi|302568889|gb|ADL45091.1| recA protein [Micromonospora aurantiaca ATCC 27029]
 gi|315409209|gb|ADU07326.1| recA protein [Micromonospora sp. L5]
          Length = 349

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 205/326 (62%), Positives = 263/326 (80%), Gaps = 2/326 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KAL+ AL+QI + +GKG++M+LG +  +   +  + +GS+ LD+ALG+GG P+GR+
Sbjct: 5   PDREKALDLALAQIDKQFGKGSVMRLGERPVVQTAV--IPTGSIALDVALGVGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YAR LGVD   LL+SQPDT
Sbjct: 63  VEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEYARALGVDTDALLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T  
Sbjct: 123 GEQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGV 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ S+KD   + GN+
Sbjct: 183 LNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDVRRIESLKDGTDVVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A+PFKQ EFDIMYG+GIS  G LID+GV+ +I+ KSGAW+++ G +LGQG
Sbjct: 243 TRVKVVKNKVAAPFKQAEFDIMYGKGISREGSLIDVGVEQAIIRKSGAWYTYDGDQLGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNA 335
           +E ++ FLREN ++A  IE  + +  
Sbjct: 303 KEKAREFLRENPDVAAEIEKKILEKL 328


>gi|262202135|ref|YP_003273343.1| recA protein [Gordonia bronchialis DSM 43247]
 gi|262085482|gb|ACY21450.1| recA protein [Gordonia bronchialis DSM 43247]
          Length = 347

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 210/342 (61%), Positives = 270/342 (78%), Gaps = 2/342 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+ AL+QI + +GKG++M+LG +    + IEV+ +GS+ LD+ALGIGG P+GRIV
Sbjct: 7   DREKALDLALAQIDKNFGKGSVMRLGEETR--QPIEVIPTGSIALDVALGIGGLPRGRIV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA +LGVD   LL+SQPDTG
Sbjct: 65  EVYGPESSGKTTVALHAVANAQAQGGIAAFIDAEHALDPDYAARLGVDTDALLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+TS++
Sbjct: 125 EQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTSAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S SK   +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD     GN+T
Sbjct: 185 SNSKTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV    + KSG+WF+++G +LGQG+
Sbjct: 245 RVKVVKNKVAPPFKQAEFDILYGQGISKEGSLIDMGVAEGFIRKSGSWFTYEGDQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           EN++ FL EN ++ + IE  +++  G+ A     + A    +
Sbjct: 305 ENARKFLLENEDVRDEIEKKIKEKLGIGAVVDADDVAPAPVE 346


>gi|296139499|ref|YP_003646742.1| recA protein [Tsukamurella paurometabola DSM 20162]
 gi|296027633|gb|ADG78403.1| recA protein [Tsukamurella paurometabola DSM 20162]
          Length = 350

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 205/346 (59%), Positives = 268/346 (77%), Gaps = 2/346 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE AL+QI + YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 6   PDREKALELALAQIDKNYGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A++Q  GG  AF+DAEHALD  YA KLGVD   LL+SQPDT
Sbjct: 64  VEIYGPESSGKTTVALHAVAEAQANGGIAAFIDAEHALDPDYAAKLGVDTDALLVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 124 GEQALEIADMLIRSGALDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGA 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+
Sbjct: 184 MNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG+GIS  G +ID+GV    + KSG+W+++ G +LGQG
Sbjct: 244 TRVKVVKNKVSPPFKQAEFDIIYGQGISREGSIIDMGVNEGFIRKSGSWYTYDGDQLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           +EN++ FL EN ++ + IE  +++  G+ AD    +         +
Sbjct: 304 KENARKFLLENPDVRDEIEKRIKEKLGVGADVTAVDADEIAPAPVE 349


>gi|218325541|emb|CAV24649.1| recombinase A [Agrobacterium tumefaciens]
          Length = 323

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 254/319 (79%), Positives = 292/319 (91%), Gaps = 1/319 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VD SKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDXSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ
Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQ 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQG
Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301

Query: 310 RENSKIFLRENIEIAENIE 328
           REN+KIFLR+N E A  IE
Sbjct: 302 RENAKIFLRDNPETANEIE 320


>gi|145593972|ref|YP_001158269.1| recombinase A [Salinispora tropica CNB-440]
 gi|189039606|sp|A4X4U1|RECA_SALTO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|145303309|gb|ABP53891.1| recA protein [Salinispora tropica CNB-440]
          Length = 348

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 206/327 (62%), Positives = 266/327 (81%), Gaps = 2/327 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+ +AL+ AL+QI + +GKG++M+LG +  +   +  V +GS+ LD+ALG+GG P+GR
Sbjct: 4   VPDRERALDLALAQIDKQFGKGSVMRLGERPVVETAV--VPTGSIALDVALGVGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++E+YGPESSGKTT+ALH +A +Q++GG  AFVDAEHALD  YAR LGVD   LL+SQPD
Sbjct: 62  VIEVYGPESSGKTTVALHAVANAQRSGGIAAFVDAEHALDPEYARALGVDTDALLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T 
Sbjct: 122 TGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            +S +    VFINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ S+KD   + GN
Sbjct: 182 VLSHTGTTAVFINQLREKIGVMFGSPETTTGGRALKFYASVRLDVRRIESLKDGTDVVGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A+PFKQ EFDIMYG+GIS  G LID+GV+ +I+ KSGAW++++G +LGQ
Sbjct: 242 RTRVKVVKNKVAAPFKQAEFDIMYGKGISREGSLIDVGVEQAIIRKSGAWYTYEGDQLGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNA 335
           G+E ++ FLREN ++A  IE  + +  
Sbjct: 302 GKEKAREFLRENPDVAAEIEKKILEKL 328


>gi|238063453|ref|ZP_04608162.1| recA protein [Micromonospora sp. ATCC 39149]
 gi|237885264|gb|EEP74092.1| recA protein [Micromonospora sp. ATCC 39149]
          Length = 348

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 204/326 (62%), Positives = 263/326 (80%), Gaps = 2/326 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KAL+ AL+QI + +GKG++M+LG +  +     V+ +GS+ LD+ALG+GG P+GR+
Sbjct: 5   PDREKALDLALAQIDKQFGKGSVMRLGERPVV--QTSVIPTGSIALDVALGVGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA+ LGVD   LL+SQPDT
Sbjct: 63  VEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEYAKALGVDTDALLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T  
Sbjct: 123 GEQALEIADMLVRSGAIDIVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGV 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ S+KD   + GN+
Sbjct: 183 LNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDVRRIESLKDGTDVVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A+PFKQ EFDIMYG+GIS  G LID+GV+ +I+ KSGAW+++ G +LGQG
Sbjct: 243 TRVKVVKNKVAAPFKQAEFDIMYGKGISREGSLIDVGVEQAIIRKSGAWYTYDGDQLGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNA 335
           +E ++ FLREN ++A  IE  + +  
Sbjct: 303 KEKAREFLRENPDVAAEIEKKILEKL 328


>gi|238917051|ref|YP_002930568.1| Ca2+-transporting ATPase [Eubacterium eligens ATCC 27750]
 gi|238872411|gb|ACR72121.1| Ca2+-transporting ATPase [Eubacterium eligens ATCC 27750]
          Length = 356

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 208/357 (58%), Positives = 279/357 (78%), Gaps = 1/357 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   DK KAL+AA+S I++ +GKG++M+LG   +    +E + +GSL LDIALGIGG PK
Sbjct: 1   MVNEDKMKALDAAISNIEKQFGKGSVMKLGESTANLN-VECIPTGSLSLDIALGIGGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YA+ +GVD+ NL ISQ
Sbjct: 60  GRVVEIYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+GDMG+S  G+QARLMSQALRKL
Sbjct: 120 PDSGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T  +S++ C+++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+R++ ++K    + 
Sbjct: 180 TPVVSKNNCVVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRKIETLKQNGEVI 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVK+VKNK+A PF++ EFDI++G+GIS  G+L+DL   A I+ KSGAWFS++G ++
Sbjct: 240 GNRTRVKIVKNKVAPPFREAEFDILFGKGISTEGDLVDLASNAGIIQKSGAWFSYEGNKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           GQGREN+K FL +N EI E ++  +R++ G+V      E + + K    K   D  E
Sbjct: 300 GQGRENAKQFLLDNPEIREEVDRRVREHYGIVDGVKEAEASDDAKQTKAKKKADTEE 356


>gi|289705928|ref|ZP_06502304.1| RecA protein [Micrococcus luteus SK58]
 gi|289557336|gb|EFD50651.1| RecA protein [Micrococcus luteus SK58]
          Length = 354

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 209/341 (61%), Positives = 268/341 (78%), Gaps = 2/341 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
              D+ KALEAAL+QI + +GKG++M+LG Q      +EV+ +GS+ +D+ALGIGG P+G
Sbjct: 3   KTPDREKALEAALAQIDKQFGKGSVMRLGDQTQT--PVEVIPTGSVAMDVALGIGGLPRG 60

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R+VEIYGPESSGKTTLALH +A +Q+ GG  AF+DAEHALD +YARKLGVD   LL+SQP
Sbjct: 61  RVVEIYGPESSGKTTLALHAVANAQRNGGIAAFIDAEHALDPVYARKLGVDTDALLVSQP 120

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI DMLV SG +DI+VIDSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T
Sbjct: 121 DTGEQALEIMDMLVSSGTLDIVVIDSVAALTPRAEIEGEMGDSHVGLQARLMSQALRKIT 180

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
             + ++K   +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+  +  G
Sbjct: 181 GRLHQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKEAGNPVG 240

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+TRVK+VKNKMA PFKQ EFDI+YG GIS  G LID+GV+  IV KSGAWF++ G +LG
Sbjct: 241 NRTRVKIVKNKMAPPFKQAEFDILYGVGISREGGLIDMGVEEGIVKKSGAWFTYDGDQLG 300

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348
           QG+EN++ FL++N ++A+ IE  +    G+  D   +    
Sbjct: 301 QGKENARRFLKDNPDLAQEIEERILTKLGIGVDPEAEADEA 341


>gi|171464132|ref|YP_001798245.1| recA protein [Polynucleobacter necessarius subsp. necessarius
           STIR1]
 gi|171193670|gb|ACB44631.1| recA protein [Polynucleobacter necessarius subsp. necessarius
           STIR1]
          Length = 362

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 227/342 (66%), Positives = 287/342 (83%), Gaps = 1/342 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL AAL+QI++ +GKG+IM+LG    I E I+VVSSGSLGLDIALG+GG  +GR++
Sbjct: 20  DKQKALTAALAQIEKQFGKGSIMRLGD-AEISEDIQVVSSGSLGLDIALGVGGLARGRVI 78

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GGTCAF+DAEHALD  YA KLGVD+ NLLISQPDTG
Sbjct: 79  EIYGPESSGKTTLTLHAIAEMQKLGGTCAFIDAEHALDVQYAGKLGVDVNNLLISQPDTG 138

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG++D+IVIDSVAAL P+AEIEGDMG+SLPG+QARLMSQALRKLT +I
Sbjct: 139 EQALEIADALVRSGSIDLIVIDSVAALVPKAEIEGDMGDSLPGLQARLMSQALRKLTGAI 198

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+   ++FINQ+RMKIGV+FGSPETTTGGNALKFY+S+RLDIRR+GSIK  D + GN+T
Sbjct: 199 KRTNTTVIFINQIRMKIGVIFGSPETTTGGNALKFYASMRLDIRRIGSIKKGDEVVGNET 258

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDIMYG GIS  GE+ID+GV+A +++KSG+W+S+ G R+GQG+
Sbjct: 259 RVKVVKNKVSPPFREAIFDIMYGAGISREGEIIDMGVEADLIEKSGSWYSYNGDRIGQGK 318

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           +N + FLREN  IA++IE+ +R+  G+ + S +    ++ ++
Sbjct: 319 DNVREFLRENPAIAKDIEAKIREKLGVKSGSAVVTDVLSEEE 360


>gi|25991655|gb|AAN76868.1| RecA [Burkholderia ambifaria]
 gi|25991657|gb|AAN76869.1| RecA [Burkholderia cepacia]
 gi|25991659|gb|AAN76870.1| RecA [Burkholderia ambifaria]
 gi|25991663|gb|AAN76872.1| RecA [Burkholderia ambifaria]
 gi|54633824|gb|AAV36022.1| RecA [Burkholderia sp. KBC-6]
 gi|54633826|gb|AAV36023.1| RecA [Burkholderia sp. KBC-7]
          Length = 336

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 230/340 (67%), Positives = 289/340 (85%), Gaps = 4/340 (1%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
            FLREN EIA  IE+ +R++ G+V    + E A    D+A
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVT---MPEGAAAVHDEA 336


>gi|320094021|ref|ZP_08025846.1| recombination protein A [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979065|gb|EFW10583.1| recombination protein A [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 375

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 205/347 (59%), Positives = 268/347 (77%), Gaps = 5/347 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D++KAL+ ALSQI + +GKG++M+LG        ++V+ +GSL LD+ALGIGG P+GR++
Sbjct: 29  DRNKALQVALSQIDKQFGKGSVMRLGDDSR--PPVQVIPTGSLALDVALGIGGLPRGRVI 86

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +QK GG  AF+DAEHALD +YAR LGVD  +LL+SQPDTG
Sbjct: 87  EIYGPESSGKTTVALHAVANAQKAGGNAAFIDAEHALDPVYARALGVDTDSLLVSQPDTG 146

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSG +DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 147 EQALEIADMLIRSGGIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 206

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S +    +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+  +  GN+T
Sbjct: 207 SATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKEAGAPVGNRT 266

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R KVVKNKMA PFKQ EFDI+YG+GIS  G +ID+GV   IV KSG+WF++   +LGQG+
Sbjct: 267 RAKVVKNKMAPPFKQAEFDIVYGKGISREGSIIDMGVDTGIVRKSGSWFTYGDDQLGQGK 326

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV---ADSLLQEPAINTKDDA 354
           EN + FL +N  +A  IE  +    G+     +   Q P+++  +DA
Sbjct: 327 ENVRQFLADNPALAGEIEQKILVALGIAEAPPEEASQAPSVDPDEDA 373


>gi|239917251|ref|YP_002956809.1| protein RecA [Micrococcus luteus NCTC 2665]
 gi|239838458|gb|ACS30255.1| protein RecA [Micrococcus luteus NCTC 2665]
          Length = 351

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 209/340 (61%), Positives = 269/340 (79%), Gaps = 2/340 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+ KALEAAL+QI + +GKG++M+LG Q      +EV+ +GS+ +D+ALGIGG P+GR
Sbjct: 1   MTDREKALEAALAQIDKQFGKGSVMRLGDQTQA--PVEVIPTGSVAMDVALGIGGLPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTLALH +A +Q+ GG  AF+DAEHALD +YARKLGVD   LL+SQPD
Sbjct: 59  VVEIYGPESSGKTTLALHAVANAQRNGGIAAFIDAEHALDPVYARKLGVDTDALLVSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DMLV SG +DI+VIDSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T 
Sbjct: 119 TGEQALEIMDMLVSSGTLDIVVIDSVAALTPRAEIEGEMGDSHVGLQARLMSQALRKVTG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            + ++K   +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+  +  GN
Sbjct: 179 RLHQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKEAGNPVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVK+VKNKMA PFKQ EFDI+YG GIS  G LID+GV+  IV KSGAWF++ G +LGQ
Sbjct: 239 RTRVKIVKNKMAPPFKQAEFDILYGVGISREGGLIDMGVEEGIVKKSGAWFTYDGDQLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348
           G+EN++ FL++N ++A  IE  +    G+   S  ++   
Sbjct: 299 GKENARRFLKDNPDLANEIEQRILTKLGIGVASEAEDDEA 338


>gi|254821760|ref|ZP_05226761.1| recombinase A [Mycobacterium intracellulare ATCC 13950]
          Length = 350

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 204/330 (61%), Positives = 269/330 (81%), Gaps = 2/330 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 5   PDREKALELAMAQIEKSYGKGSVMRLGDE--MRQPISVIPTGSIALDVALGIGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 63  VEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T +
Sbjct: 123 GEQALEIADMLIRSGALDILVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+
Sbjct: 183 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVK+VKNK++ PFKQ EFDI+YG GIS  G LID+GV    + KSG+WF+++G++LGQG
Sbjct: 243 TRVKIVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGSWFTYEGEQLGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +EN++ FL EN E+A  IE  +++  G+ A
Sbjct: 303 KENARTFLMENDEVANEIEKKIKEKLGIGA 332


>gi|56696903|ref|YP_167265.1| recombinase A [Ruegeria pomeroyi DSS-3]
 gi|76363341|sp|Q5LRU0|RECA_SILPO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|56678640|gb|AAV95306.1| RecA [Ruegeria pomeroyi DSS-3]
          Length = 347

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 248/339 (73%), Positives = 286/339 (84%), Gaps = 1/339 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            DK KAL++AL+QI+R +GKG+IM+LG + +I E IE  S+GSLGLDIALGIGG P GRI
Sbjct: 7   ADKQKALDSALAQIERQFGKGSIMRLGGENAIQE-IEASSTGSLGLDIALGIGGLPMGRI 65

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD  YARKLGVDL  LLISQPDT
Sbjct: 66  VEIYGPESSGKTTLTLHCIAEQQKRGGVCAFVDAEHALDPQYARKLGVDLDELLISQPDT 125

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAV+++V+DSVAALTP++E+EGDMG+S  G+ ARLMSQA+RKLT S
Sbjct: 126 GEQALEITDTLVRSGAVNMVVVDSVAALTPKSELEGDMGDSSVGVHARLMSQAMRKLTGS 185

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ISRSKC+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D + GN 
Sbjct: 186 ISRSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRDEVVGNA 245

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGVKA +VDKSG+WFS+  +R+GQG
Sbjct: 246 TRVKVVKNKVAPPFKQVEFDIMYGEGISKTGELLDLGVKAGVVDKSGSWFSYGDERIGQG 305

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348
           REN+K FLREN  IA  IE  +R   GL  D       I
Sbjct: 306 RENAKTFLRENQSIALAIEDKIRAAHGLEFDMSDDGEDI 344


>gi|118464179|ref|YP_882804.1| recombinase A [Mycobacterium avium 104]
 gi|254776066|ref|ZP_05217582.1| recombinase A [Mycobacterium avium subsp. avium ATCC 25291]
 gi|60392996|sp|P62219|RECA_MYCPA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166220656|sp|A0QIR6|RECA_MYCA1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|118165466|gb|ABK66363.1| protein RecA [Mycobacterium avium 104]
          Length = 350

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 204/330 (61%), Positives = 269/330 (81%), Gaps = 2/330 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 5   PDREKALELAMAQIEKSYGKGSVMRLGDE--MRQPISVIPTGSIALDVALGIGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 63  VEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T +
Sbjct: 123 GEQALEIADMLIRSGALDILVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+
Sbjct: 183 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVK+VKNK++ PFKQ EFDI+YG GIS  G LID+GV    + KSG+WF+++G++LGQG
Sbjct: 243 TRVKIVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGSWFTYEGEQLGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +EN++ FL EN E+A  IE  +++  G+ A
Sbjct: 303 KENARTFLMENDEVANEIEKKIKEKLGIGA 332


>gi|296171749|ref|ZP_06852908.1| recombination protein A [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295893978|gb|EFG73743.1| recombination protein A [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 350

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 205/330 (62%), Positives = 270/330 (81%), Gaps = 2/330 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 5   PDREKALELAMAQIEKSYGKGSVMRLGDE--MRQPISVIPTGSIALDVALGIGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 63  VEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T +
Sbjct: 123 GEQALEIADMLIRSGALDILVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+
Sbjct: 183 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG GIS  G LID+GV+   + KSG+WF+++G++LGQG
Sbjct: 243 TRVKVVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVEQGFIRKSGSWFTYEGEQLGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +EN++ FL EN E+A  IE  +++  G+ A
Sbjct: 303 KENARTFLMENDEVANEIEKKIKEKLGIGA 332


>gi|89092117|ref|ZP_01165072.1| recombinase A [Oceanospirillum sp. MED92]
 gi|89083852|gb|EAR63069.1| recombinase A [Oceanospirillum sp. MED92]
          Length = 346

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 234/354 (66%), Positives = 285/354 (80%), Gaps = 12/354 (3%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            ++ KAL+AALSQI+R +GKGA+M++G Q    E I  VS+GSLGLDIALGIGG P GRI
Sbjct: 3   ANRKKALDAALSQIERQFGKGAVMRMGDQPR--EAIPSVSTGSLGLDIALGIGGLPYGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTL L  +A++QK G TCAFVDAEHALD IYA KLGVD+ +LL+SQPDT
Sbjct: 61  VEIYGPESSGKTTLTLQVVAEAQKQGKTCAFVDAEHALDPIYAEKLGVDVDSLLVSQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITDMLVRS AVD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT +
Sbjct: 121 GEQALEITDMLVRSNAVDVIIVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTGN 180

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +  S C+LVFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR G+IK  D + GN+
Sbjct: 181 VKSSNCLLVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGAIKQGDEVVGNE 240

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PF+Q EF IMYG+GI   GE+IDLGVK  +VDKSGAW+++ G ++GQG
Sbjct: 241 TRVKVVKNKVSPPFRQAEFQIMYGQGIYHMGEVIDLGVKEGLVDKSGAWYAYNGDKIGQG 300

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           + N+  FL EN +IA  IE+ LR         LL  P       A++D+++N++
Sbjct: 301 KANASKFLEENPQIANEIETELR-------SRLLSNPL---DKPAEEDESENLD 344


>gi|294500865|ref|YP_003564565.1| RecA2 protein [Bacillus megaterium QM B1551]
 gi|295706211|ref|YP_003599286.1| RecA2 protein [Bacillus megaterium DSM 319]
 gi|25004877|emb|CAD56684.1| RecA2 protein [Bacillus megaterium]
 gi|294350802|gb|ADE71131.1| RecA2 protein [Bacillus megaterium QM B1551]
 gi|294803870|gb|ADF40936.1| RecA2 protein [Bacillus megaterium DSM 319]
          Length = 345

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 211/347 (60%), Positives = 272/347 (78%), Gaps = 5/347 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG Q    + I  + SGSL LDIALG+GG+P+GR
Sbjct: 1   MNDRQAALDMALKQIEKQFGKGSIMKLGEQTE--KRISTIPSGSLALDIALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VE+YGPESSGKTT+ALH IA+ Q+ GG  AF+DAEHALD +YA+KLGV++  LL+SQPD
Sbjct: 59  VVEVYGPESSGKTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDIIV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K  + I GN
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TR+KVVKNK+A PF+  E DIMYGEGIS  GE++D+  +  IV KSG+W+S+  +RLGQ
Sbjct: 239 KTRIKVVKNKVAPPFRAAEVDIMYGEGISKEGEILDIASELDIVQKSGSWYSYNDERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           GREN+K FL+EN +I + I   +R++ GL  D    EPA    D  D
Sbjct: 299 GRENAKQFLKENTDIRQEIAGQVREHHGLDQDG---EPAPEDDDQGD 342


>gi|15640565|ref|NP_230194.1| recombinase A [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|9654971|gb|AAF93711.1| recA protein [Vibrio cholerae O1 biovar El Tor str. N16961]
          Length = 412

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 211/354 (59%), Positives = 278/354 (78%), Gaps = 2/354 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           DY + +   +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG 
Sbjct: 53  DYPERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 110

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  
Sbjct: 111 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 170

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 171 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 230

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 231 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 290

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+
Sbjct: 291 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSY 350

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            G ++GQG+ N+  +L+EN EIA+ ++  LR+      +  L     +  DD +
Sbjct: 351 NGDKIGQGKANAYKYLKENPEIAKTLDKKLREMLLNPENMQLIAETSSAADDVE 404


>gi|291561253|emb|CBL40052.1| protein RecA [butyrate-producing bacterium SS3/4]
          Length = 354

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 213/336 (63%), Positives = 274/336 (81%), Gaps = 1/336 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN  DK KAL+AAL+QI++ YGKG++M+LG  G+    IE V +GSL LDIALG+GG PK
Sbjct: 1   MNKDDKLKALDAALTQIEKAYGKGSVMKLGDSGANMN-IETVPTGSLSLDIALGLGGLPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YA+ +GVD+ NL ISQ
Sbjct: 60  GRVVEIYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+GDMG+S  G+QARLMSQALRKL
Sbjct: 120 PDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+ IS++ CI++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+RR  S+K    + 
Sbjct: 180 TAIISKTNCIVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRRTESLKQSGEVI 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN  RVKVVKNK+A PFK+ EFDIM+G+GIS  G+++DL   A+IV+KSG+W+++KG ++
Sbjct: 240 GNHVRVKVVKNKIAPPFKEAEFDIMFGKGISREGDVLDLAADANIVEKSGSWYAYKGAKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSL 342
           GQGREN+K +L +N  I E IE+ +R+  GL A  +
Sbjct: 300 GQGRENAKTYLAQNPLICEEIENQVRELHGLEAQHV 335


>gi|254436817|ref|ZP_05050311.1| protein RecA [Octadecabacter antarcticus 307]
 gi|198252263|gb|EDY76577.1| protein RecA [Octadecabacter antarcticus 307]
          Length = 359

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 243/354 (68%), Positives = 289/354 (81%), Gaps = 4/354 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
            +    DK KAL++AL+QI+R +GKG+IM LG  GS  + IE  S+GSLGLDIALGIGG 
Sbjct: 10  TDKKSADKQKALDSALAQIERQFGKGSIMTLG--GSAVQEIESTSTGSLGLDIALGIGGI 67

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGR+VEIYGPESSGKTTL LH +A+ QK GG CAF+DAEHALD  YA+KLGV+L +LLI
Sbjct: 68  PKGRVVEIYGPESSGKTTLTLHCLAEEQKKGGVCAFIDAEHALDPGYAKKLGVNLDDLLI 127

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D LVRSGA+ +IV+DSVAALTP++E+EGDMG+   G+ ARLMSQA+R
Sbjct: 128 SQPDTGEQALEIVDTLVRSGAISMIVVDSVAALTPKSELEGDMGDHSVGVHARLMSQAMR 187

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT SISR+KC ++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GS+KD+D 
Sbjct: 188 KLTGSISRTKCTVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKDRDE 247

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           I GN TRVKVVKNK+A PFK VEFDIMYGEGIS  GEL+D+GVKA IV+KSG+WFS+  +
Sbjct: 248 IVGNSTRVKVVKNKVAPPFKVVEFDIMYGEGISKLGELVDMGVKAGIVEKSGSWFSYGDE 307

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           R+GQGREN+K FLREN   A  IE  +R   GL  D   ++P    +DDA  +D
Sbjct: 308 RIGQGRENAKTFLRENQHFAIEIEDKIRAAHGLDFDGAPKKP--GKEDDALLED 359


>gi|54633822|gb|AAV36021.1| RecA [Burkholderia sp. KBC-5]
          Length = 336

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 230/340 (67%), Positives = 289/340 (85%), Gaps = 4/340 (1%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
            FLREN EIA  IE+ +R++ G+V    + E A    D+A
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVT---MPEGAAAVYDEA 336


>gi|294787000|ref|ZP_06752254.1| protein RecA [Parascardovia denticolens F0305]
 gi|315226642|ref|ZP_07868430.1| recombination protein A [Parascardovia denticolens DSM 10105]
 gi|294485833|gb|EFG33467.1| protein RecA [Parascardovia denticolens F0305]
 gi|315120774|gb|EFT83906.1| recombination protein A [Parascardovia denticolens DSM 10105]
          Length = 373

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 206/352 (58%), Positives = 274/352 (77%), Gaps = 2/352 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL+Q+++ +GKG+ M+LG +    + +EV+ +GSL LD+ALGIGG P+GRIVE
Sbjct: 15  RQAALDTALAQVEKTFGKGSAMRLGDKP--VQHVEVIPTGSLALDLALGIGGLPRGRIVE 72

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH +A +QK GG  AF+DAEHALD  YARKLGVD  +L+ISQPD GE
Sbjct: 73  IYGPESSGKTTIALHAVANAQKAGGVAAFIDAEHALDPEYARKLGVDTDSLIISQPDNGE 132

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DML+RSGA+DIIVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRK+T ++S
Sbjct: 133 QALEIADMLIRSGALDIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKMTGALS 192

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S    +FINQ+R KIGVMFG+PETTTGG ALKFY+SVRLDIRR+ ++K+ D   GN+TR
Sbjct: 193 QSNTTAIFINQLREKIGVMFGNPETTTGGKALKFYASVRLDIRRIQTLKNGDEAVGNRTR 252

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNKMA PFK  EFDI+YGEG+S  G ++D+G+   +V KSG+WF++ G +LGQGRE
Sbjct: 253 VKVVKNKMAPPFKSAEFDILYGEGVSREGSILDMGLALGLVKKSGSWFTYDGDQLGQGRE 312

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            ++ FL++N ++A+ IE+ ++   G++ D      +   +  +  DD    E
Sbjct: 313 KARQFLKDNPQLADEIETKVKVAYGVIPDPNPDAASQEGESPSAADDGAKGE 364


>gi|42416867|gb|AAS16315.1| RecA [Mycobacterium mucogenicum]
 gi|42416891|gb|AAS16327.1| RecA [Mycobacterium mucogenicum]
          Length = 350

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 203/330 (61%), Positives = 265/330 (80%), Gaps = 2/330 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE AL+QI + +GKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 6   PDREKALELALAQIDKSFGKGSVMRLGEETR--QPISVIPTGSIALDVALGIGGLPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD   LL+SQPDT
Sbjct: 64  IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 124 GEQALEIADMLVRSGAIDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+
Sbjct: 184 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVK+VKNK+A PFKQ EFDI+YG GIS  G LID+GV+   + KSG+WF++ G++LGQG
Sbjct: 244 TRVKIVKNKVAPPFKQAEFDILYGRGISREGSLIDMGVEHGFIRKSGSWFTYDGEQLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +EN++ +L +N++ A  IE  +++  G+ A
Sbjct: 304 KENARNYLLQNVDAANEIEKKIKEKLGIGA 333


>gi|300784251|ref|YP_003764542.1| recombination protein RecA [Amycolatopsis mediterranei U32]
 gi|11387038|sp|Q9REV6|RECA_AMYMU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|6606547|gb|AAF19203.1|AF208682_1 recombination repairing protein [Amycolatopsis mediterranei U32]
 gi|299793765|gb|ADJ44140.1| recombination protein RecA [Amycolatopsis mediterranei U32]
          Length = 348

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 214/346 (61%), Positives = 271/346 (78%), Gaps = 3/346 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            DK KALE AL+QI + YGKG++M+LG +G     I V+ +G++ LD+ALGIGG P+GR+
Sbjct: 5   PDKDKALELALAQIDKQYGKGSVMRLGEEGRA--PIAVIPTGAIALDVALGIGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +E+YGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA+KLGVD   LL+SQPDT
Sbjct: 63  IEVYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPDYAKKLGVDTDALLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 123 GEQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+
Sbjct: 183 MNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGGEAVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFKQ EFDI+YG GIS  G LID+GV  +I+ KSGAW++++G +LGQG
Sbjct: 243 TRVKVVKNKMAPPFKQAEFDILYGHGISREGSLIDMGVDQAILRKSGAWYTYEGDQLGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           +EN++ FLR+N +IA  IE  +++  G+ A  L  E         D
Sbjct: 303 KENARKFLRDNPDIANEIEKRIKEKLGIGA-QLDAEAVEAVPAPVD 347


>gi|302382290|ref|YP_003818113.1| recA protein [Brevundimonas subvibrioides ATCC 15264]
 gi|302192918|gb|ADL00490.1| recA protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 367

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 237/350 (67%), Positives = 295/350 (84%), Gaps = 1/350 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
            +  DK +ALEAA++QI R +GKG++M+LG +G I + I  VS+GSLGLD+ALGIGG P+
Sbjct: 19  KDDGDKQRALEAAIAQIDRAFGKGSVMKLG-KGGIADVIPSVSTGSLGLDMALGIGGLPR 77

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++E++GPESSGKTTLALHT+A+ QK+GGT AFVDAEHALD  YA+KLGV+L +LL+SQ
Sbjct: 78  GRVIEVFGPESSGKTTLALHTVAEIQKSGGTAAFVDAEHALDPGYAQKLGVNLDDLLVSQ 137

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D LVRSGAVDI+V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKL
Sbjct: 138 PDTGEQALEIVDTLVRSGAVDIVVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKL 197

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+SIS+S CI++FINQ+R KIGVM+GSPETTTGGNALKFY+SVRLDIRR G+IKD+D + 
Sbjct: 198 TASISKSNCIVLFINQIRHKIGVMYGSPETTTGGNALKFYASVRLDIRRTGAIKDRDEVV 257

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN TRVKVVKNK+A PF++V FDIMYGEGIS  GE+IDLGVKA I++KSG+WFS+   R+
Sbjct: 258 GNTTRVKVVKNKVAPPFREVIFDIMYGEGISKLGEIIDLGVKAGIIEKSGSWFSYDSTRI 317

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           GQGREN + FL+ N ++A  IE  +R++   +AD LL  P  +   D + 
Sbjct: 318 GQGRENVRAFLKANPDMAAAIEDKVRKSTSKIADELLGTPEPDEGQDLEG 367


>gi|272894040|gb|ACZ96546.1| RecA [Burkholderia contaminans]
          Length = 343

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 231/344 (67%), Positives = 290/344 (84%), Gaps = 3/344 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEI
Sbjct: 1   SKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R
Sbjct: 120 ALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKR 179

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           + C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRV
Sbjct: 180 TNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N
Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299

Query: 313 SKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           ++ FLREN EIA  IE+ +R++ G+V   +    A +  +  D+
Sbjct: 300 AREFLRENPEIAREIENRIRESLGVVT--MPDGAAQDEAEAMDE 341


>gi|163814166|ref|ZP_02205558.1| hypothetical protein COPEUT_00320 [Coprococcus eutactus ATCC 27759]
 gi|158450615|gb|EDP27610.1| hypothetical protein COPEUT_00320 [Coprococcus eutactus ATCC 27759]
          Length = 354

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 199/352 (56%), Positives = 276/352 (78%), Gaps = 2/352 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +    +N  DK KAL+AA++QI++ YGKG++M+LG   +    I+V+ +GSL LDIALG+
Sbjct: 4   NSINSVNKDDKKKALDAAIAQIEKQYGKGSVMKLGDSNANMN-IDVIPTGSLSLDIALGL 62

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GRI+E++GPESSGKTT+ALH +A+ QK GG   F+DAEHALD  YA+ +GVD+ N
Sbjct: 63  GGIPRGRIIEVFGPESSGKTTVALHIVAEIQKRGGIAGFIDAEHALDPTYAKNIGVDIDN 122

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L ISQPD GEQALEIT+ +VRSGAVD++++DSVAAL P+AEI+G+MG+S  G+ ARLMSQ
Sbjct: 123 LYISQPDCGEQALEITETMVRSGAVDVVIVDSVAALVPKAEIDGEMGDSHMGLHARLMSQ 182

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT+ +S++ C+++FINQ+R K+GV+FG+PE TTGG ALKFY+SVRLD+RR+ +++ 
Sbjct: 183 ALRKLTAVVSKTNCVVIFINQLREKVGVVFGNPEVTTGGRALKFYASVRLDVRRIDTLRQ 242

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
              I GN+TRVK+VKNK+A PFK+ EFDI++G+GIS  G+++DL V   IVDKSGAW+++
Sbjct: 243 GGEIVGNRTRVKIVKNKVAPPFKEAEFDIVFGKGISKVGDILDLAVANDIVDKSGAWYAY 302

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSL-LQEPAINTKD 352
            G ++GQGREN+K++L  N  I   IE  +R+  G+  D     EPA N ++
Sbjct: 303 NGNKIGQGRENAKMYLENNETICSEIEQKVREILGVAGDGAGTTEPAENEEE 354


>gi|297584104|ref|YP_003699884.1| recA protein [Bacillus selenitireducens MLS10]
 gi|297142561|gb|ADH99318.1| recA protein [Bacillus selenitireducens MLS10]
          Length = 352

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 205/348 (58%), Positives = 274/348 (78%), Gaps = 2/348 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+ +AL+ AL QI++ +GKG+IM+LG Q    + +  +SSG L LDIALG+GG+P+GR
Sbjct: 1   MSDRKQALDMALKQIEKQFGKGSIMKLGEQAE--QRVSTISSGVLALDIALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++E+YGPESSGKTT+ALH IA+ Q+ GGT AF+DAEHALD  YA+ LGVD+ NLL+SQPD
Sbjct: 59  VIEVYGPESSGKTTVALHAIAEVQRNGGTAAFIDAEHALDPKYAQALGVDIDNLLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVD+IV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDMIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           ++S+SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR  ++K  + + GN
Sbjct: 179 AVSKSKTIAMFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMIGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK+A PFK  E DIMYGEGIS  G ++D+     IV KSGAW+S+ G R+GQ
Sbjct: 239 KTKLKVVKNKVAPPFKTAEVDIMYGEGISREGSILDIASDLDIVQKSGAWYSYDGDRMGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           GREN+K FL+EN E++  I+  +R++ GL+    +  PA +   + + 
Sbjct: 299 GRENAKQFLKENDEVSSEIDRKIREHHGLLDVQDVPAPAEDEALEGED 346


>gi|108799114|ref|YP_639311.1| recombinase A [Mycobacterium sp. MCS]
 gi|119868229|ref|YP_938181.1| recombinase A [Mycobacterium sp. KMS]
 gi|126434720|ref|YP_001070411.1| recombinase A [Mycobacterium sp. JLS]
 gi|122977082|sp|Q1BA29|RECA_MYCSS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|189039599|sp|A3PYE3|RECA_MYCSJ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|189039600|sp|A1UEY3|RECA_MYCSK RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|108769533|gb|ABG08255.1| recA protein [Mycobacterium sp. MCS]
 gi|119694318|gb|ABL91391.1| recA protein [Mycobacterium sp. KMS]
 gi|126234520|gb|ABN97920.1| recA protein [Mycobacterium sp. JLS]
          Length = 347

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 206/342 (60%), Positives = 272/342 (79%), Gaps = 6/342 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE AL+QI++ +GKG++M+LG +  +   I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 6   PDREKALELALAQIEKSHGKGSVMRLGDE--VRAPISVIPTGSIALDVALGIGGLPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 64  IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 124 GEQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGA 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +S S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+
Sbjct: 184 LSNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVK+VKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG
Sbjct: 244 TRVKIVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEHGFIRKSGSWFTYEGEQLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL----VADSLLQEPA 347
           +EN++ FL EN ++A  IE  +++   +     AD +L  P 
Sbjct: 304 KENARKFLLENGDVANEIEKKIKEKLNIGAVVTADDVLPAPV 345


>gi|297626494|ref|YP_003688257.1| RecA (Recombinase A) [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296922259|emb|CBL56831.1| RecA (Recombinase A) [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 372

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 213/339 (62%), Positives = 270/339 (79%), Gaps = 2/339 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M + D++KAL+AAL+QI++ +GKG++M+LG Q   +  IE + +GS+ LDIALGIGG P+
Sbjct: 1   MAVADRNKALDAALAQIEKAHGKGSVMRLGDQA--YAQIESIPTGSVALDIALGIGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVE+YGPESSGKTT+ALH IA +Q  GG CAF+DAEHALD  YA  LGV+   LL+SQ
Sbjct: 59  GRIVEVYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPSYAHALGVNTDELLVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI D LVRSGA++++VIDSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALEIADTLVRSGALELLVIDSVAALTPRAEIEGEMGDSHVGLQARLMSQALRKM 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T +I  +   ++FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ S+K+ + I 
Sbjct: 179 TGAIKSANTTVIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRIESLKNGNEIV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKV KNK+A PFKQ EFDI+YG+GIS  G LID+GV A IV K+GAWF++   +L
Sbjct: 239 GNRTRVKVAKNKVAPPFKQAEFDILYGKGISREGSLIDMGVDAGIVRKAGAWFTYGDDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           GQG+EN++ FL  + E+A +IE  +R   GL A   + E
Sbjct: 299 GQGKENARTFLITHPEVASDIEHKIRVKLGLDASDEVPE 337


>gi|319431773|gb|ADP92383.2| recombinase [Burkholderia multivorans]
          Length = 333

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 228/326 (69%), Positives = 284/326 (87%), Gaps = 1/326 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIY
Sbjct: 1   KALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQA
Sbjct: 60  GPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+
Sbjct: 120 LEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRT 179

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVK
Sbjct: 180 NCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVK 239

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N+
Sbjct: 240 VVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNA 299

Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339
           + FLREN EIA  IE+ +R++ G+ A
Sbjct: 300 REFLRENPEIAREIENRIRESLGVAA 325


>gi|260752406|ref|YP_003225299.1| recombinase A [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258551769|gb|ACV74715.1| recA protein [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 354

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 241/337 (71%), Positives = 290/337 (86%), Gaps = 2/337 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N +DK KALEAAL+QI R +GKG++M+LGS+  I   I+ +SSGSLGLDIALGIGG P+G
Sbjct: 14  NNMDKQKALEAALAQIDRAFGKGSVMRLGSREKI--EIDTISSGSLGLDIALGIGGLPRG 71

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYG ESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+KLGV+  +L++SQP
Sbjct: 72  RIVEIYGHESSGKTTLALHAIAEAQKAGGTAAFVDAEHALDPVYAKKLGVNTDDLIVSQP 131

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEITD L+RS AVDI+V+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T
Sbjct: 132 DTGEQALEITDTLIRSNAVDILVVDSVAALTPRAEIEGEMGDSHVGLQARLMSQALRKIT 191

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            SI+RS+ +++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRRVG IKD+D I G
Sbjct: 192 GSINRSQTLVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRVGQIKDRDEIVG 251

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N TRVKVVKNK+A PFKQVEFDIMYGEG+S  GE++DLGVKA I+DKSG+WFS    R+G
Sbjct: 252 NATRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIIDKSGSWFSHDSVRIG 311

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
           QGREN+K FLRE+ E+ E IE ++R N   +AD +L 
Sbjct: 312 QGRENAKTFLREHPEMTEKIEKMIRHNTAEIADEMLD 348


>gi|227495167|ref|ZP_03925483.1| recombination protein A [Actinomyces coleocanis DSM 15436]
 gi|226831619|gb|EEH64002.1| recombination protein A [Actinomyces coleocanis DSM 15436]
          Length = 370

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 204/348 (58%), Positives = 270/348 (77%), Gaps = 2/348 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D++K+LE ALSQI + +GKG++M+LG +      I+V+ +GSL LD+ALG+GGFP+GR
Sbjct: 4   TPDRNKSLELALSQIDKQFGKGSVMRLGDENR--PAIQVIPTGSLALDVALGVGGFPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA+KLGV+   LL+SQPD
Sbjct: 62  IIEVYGPESSGKTTVALHAVASAQRQGGNAAFIDAEHALDPEYAKKLGVNTDELLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DML+RSG +DIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT 
Sbjct: 122 TGEQALEIADMLIRSGGIDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           ++S +    +FINQ+R KIGV FGSPETTTGG ALKFY+SVRLD+RR+ ++K+  +  GN
Sbjct: 182 ALSATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRLDVRRIETLKEGSNPVGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNKMA PFKQ EFDI+YG+GIS  G +ID+GV+ +++ KSG+WF++   +LGQ
Sbjct: 242 RTRVKVVKNKMAPPFKQAEFDILYGQGISREGSIIDMGVETNVIKKSGSWFTYGSDQLGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           G+EN + FL++N E+A  IE  +    G+ A+          +   ++
Sbjct: 302 GKENVRNFLKDNPELANEIEHKILVAMGIRAEDSEMPALPGAEPAVEE 349


>gi|209967935|gb|ACB38233.2| RecA [Burkholderia cepacia]
          Length = 338

 Score =  383 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 231/342 (67%), Positives = 290/342 (84%), Gaps = 4/342 (1%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEI
Sbjct: 1   SKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R
Sbjct: 120 ALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKR 179

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           + C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRV
Sbjct: 180 TNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N
Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299

Query: 313 SKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           ++ FLREN EIA  IE+ +R++ G+V    + + A   + +A
Sbjct: 300 AREFLRENPEIAREIENRIRESLGVVT---MPDGAAQDEAEA 338


>gi|254486860|ref|ZP_05100065.1| protein RecA [Roseobacter sp. GAI101]
 gi|214043729|gb|EEB84367.1| protein RecA [Roseobacter sp. GAI101]
          Length = 356

 Score =  383 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 245/363 (67%), Positives = 299/363 (82%), Gaps = 16/363 (4%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD +K+    +K KAL++AL+QI+R +GKG+IM+LG+ G+I + I+  S+GSLGLDIALG
Sbjct: 9   MDNKKQ---AEKQKALDSALAQIERQFGKGSIMKLGAPGAI-QDIKSSSTGSLGLDIALG 64

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG P GRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YARKLGVD+ 
Sbjct: 65  IGGLPMGRIIEIYGPESSGKTTLTLHCVAEQQKAGGVCAFVDAEHALDPQYARKLGVDID 124

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LLISQPDTGEQALEI D LVRSGAV+++V+DSVAALTP++E+EGDMG+S  G+QARLMS
Sbjct: 125 ELLISQPDTGEQALEIVDTLVRSGAVNMVVVDSVAALTPKSELEGDMGDSSVGVQARLMS 184

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKLT SISRS C+++FINQ+RMKIGVMFGSPETT+GGNALKFYSSVRLDIRR+G++K
Sbjct: 185 QAMRKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTSGGNALKFYSSVRLDIRRIGALK 244

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D+D + GN TRVK+VKNK+A+PFKQVEFDIMYGEGIS  GEL+DLGVKA +VDKSG+WFS
Sbjct: 245 DRDEVVGNATRVKIVKNKVAAPFKQVEFDIMYGEGISKMGELLDLGVKAGVVDKSGSWFS 304

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           +  +R+GQGREN+K FLREN  +A  IE  +R   GL  D             ++KDD D
Sbjct: 305 YGDERIGQGRENAKTFLRENEAMAMEIEDKIRAAHGLDFDG------------SEKDDID 352

Query: 361 NVE 363
            +E
Sbjct: 353 ILE 355


>gi|160937429|ref|ZP_02084790.1| hypothetical protein CLOBOL_02320 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439498|gb|EDP17248.1| hypothetical protein CLOBOL_02320 [Clostridium bolteae ATCC
           BAA-613]
          Length = 388

 Score =  383 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 213/360 (59%), Positives = 280/360 (77%), Gaps = 1/360 (0%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
            ++MN  +K KAL+AAL+QI++ YGKG++M+LG   +    IE V +GS+ LDIALG+GG
Sbjct: 21  NRDMNKDEKLKALDAALTQIEKAYGKGSVMKLGDSRANMN-IETVPTGSISLDIALGLGG 79

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            PKGRIVE+YGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YAR +GVD+ NL 
Sbjct: 80  VPKGRIVEVYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYARNIGVDIDNLY 139

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           ISQPD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+G+MG+S  G+QARLMSQAL
Sbjct: 140 ISQPDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGEMGDSHVGLQARLMSQAL 199

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT+ IS+S CI++FINQ+R K+GVMFG+PETTTGG ALKFY+SVRLD+RR+ ++K   
Sbjct: 200 RKLTAVISKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYASVRLDVRRIETLKQGG 259

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            +TGN+ RVKVVKNK+A PFK+ EFDIM+G GIS  G+++DL VK +I++KSGAWF++ G
Sbjct: 260 EVTGNRVRVKVVKNKIAPPFKEAEFDIMFGRGISKEGDILDLAVKENIIEKSGAWFAYNG 319

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            ++GQGRENSK +L +N  +   +E+ +R    L       E A   K  A + +T   E
Sbjct: 320 SKIGQGRENSKQYLSDNPAVCAEVEAKVRAKYELPGAEEAMEAAEAFKTAAKQAETKTGE 379


>gi|66275520|gb|AAY44023.1| RecA [Burkholderia vietnamiensis]
 gi|70904905|gb|AAZ14030.1| RecA [Burkholderia vietnamiensis]
          Length = 328

 Score =  383 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 228/325 (70%), Positives = 284/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|239995698|ref|ZP_04716222.1| recombinase A [Alteromonas macleodii ATCC 27126]
          Length = 348

 Score =  383 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 229/344 (66%), Positives = 279/344 (81%), Gaps = 2/344 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AA+ QI++ +GKGAIM+LG   ++   IE +S+GSL +DIALGIGG P GR+V
Sbjct: 4   NKSKALTAAVGQIEKQFGKGAIMRLGDNQAM--DIEAISTGSLTIDIALGIGGLPCGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++Q+ G TCAFVDAEHALD +YA KLGV++  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAEAQRKGKTCAFVDAEHALDPVYAEKLGVNIDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGAVD++++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT++I
Sbjct: 122 EQALEICDMLVRSGAVDVVIVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTANI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  + +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G++K+ D + GN+T
Sbjct: 182 KRSNTLCIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAVKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF I YGEGIS   ELIDLGVK  +VDK+GAW+S+KG R+GQG+
Sbjct: 242 RVKVVKNKVAPPFKQAEFMIRYGEGISKEAELIDLGVKQKLVDKAGAWYSYKGDRIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
            N   FL+EN EIA  IE+ +RQ   L      +E     +DD 
Sbjct: 302 ANVMKFLKENPEIANEIETKIRQELLLSKTMKAEEAVPQQEDDV 345


>gi|25991661|gb|AAN76871.1| RecA [Burkholderia ambifaria]
          Length = 336

 Score =  383 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 229/340 (67%), Positives = 289/340 (85%), Gaps = 4/340 (1%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA K+GV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKVGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
            FLREN EIA  IE+ +R++ G+V    + E A    D+A
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVT---MPEGAAAVHDEA 336


>gi|915212|gb|AAA73517.1| RecA [Gluconobacter oxydans]
          Length = 344

 Score =  383 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 244/349 (69%), Positives = 295/349 (84%), Gaps = 5/349 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KALE ALSQI+R +GKG+IM++G +    E  +V+S+GSLGLDIALGIGG P+GRI
Sbjct: 1   MDKTKALEGALSQIERAFGKGSIMRMGQRPK--EQADVISTGSLGLDIALGIGGMPRGRI 58

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH +A++QK GGT A +DAEHALD  YARKLGV++  LL+SQPD 
Sbjct: 59  VEIYGPESSGKTTLALHVLAEAQKKGGTVAVIDAEHALDPGYARKLGVNIDELLLSQPDA 118

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++V+DSVAAL PR E+EGDMG+S  G+ ARLMSQALRKLT +
Sbjct: 119 GEQALEICDTLVRSGAVDVLVVDSVAALVPRRELEGDMGDSHVGLHARLMSQALRKLTGT 178

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +SRS  +++F+NQM MKIGVMFG+PETTTGGNALKFYSS+RLDIR +GSIKDKD + GNQ
Sbjct: 179 VSRSNTLVIFLNQMGMKIGVMFGNPETTTGGNALKFYSSIRLDIRHIGSIKDKDEVVGNQ 238

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PF+QVEFDIMYGEGIS  GEL+DLGVKA+IV+KSGAWFSF  QR+GQG
Sbjct: 239 TRVKVVKNKMAPPFRQVEFDIMYGEGISKMGELLDLGVKANIVEKSGAWFSFDSQRIGQG 298

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           REN+K FLR++ E++  IE  +R +AG+VAD+L+  P     D+A  DD
Sbjct: 299 RENAKQFLRDDPEMSSEIERRIRSDAGVVADALMVGP---EGDEASSDD 344


>gi|311350401|gb|ADP92399.1| recombinase [Burkholderia stabilis]
          Length = 338

 Score =  383 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 230/340 (67%), Positives = 290/340 (85%), Gaps = 4/340 (1%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEI
Sbjct: 1   SKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R
Sbjct: 120 ALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKR 179

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRV
Sbjct: 180 TNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRV 239

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N
Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299

Query: 313 SKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           ++ FLREN EIA  IE+ +R++ G+VA   + +  +N  +
Sbjct: 300 AREFLRENPEIAREIENRIRESLGVVA---MPDGVVNEAE 336


>gi|65306699|gb|AAY41902.1| RecA [Mycobacterium aubagnense]
          Length = 350

 Score =  383 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 205/330 (62%), Positives = 265/330 (80%), Gaps = 2/330 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE AL+QI + +GKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 6   PDREKALELALAQIDKSFGKGSVMRLGEETR--QPISVIPTGSIALDVALGIGGLPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD   LL+SQPDT
Sbjct: 64  VEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 124 GEQALEIADMLVRSGAIDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+
Sbjct: 184 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVK+VKNK+A PFKQ EFDI+YG GIS  G LID+GV+   + KSG+WF++ G++LGQG
Sbjct: 244 TRVKIVKNKVAPPFKQAEFDILYGRGISREGSLIDMGVEHGFIRKSGSWFTYDGEQLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +EN++ FL +N++ A  IE  +++  G+ A
Sbjct: 304 KENARNFLLQNLDAANEIEKKIKEKLGIGA 333


>gi|132219|sp|P16034|RECA_MAGMG RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|38868|emb|CAA35243.1| unnamed protein product [Magnetospirillum magnetotacticum]
          Length = 344

 Score =  383 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 237/346 (68%), Positives = 291/346 (84%), Gaps = 2/346 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +D+ KALEAA+SQI+R +GKG+IM+LG +  + E  EVVS+  LGLD+ALGIGG P+GRI
Sbjct: 1   MDRQKALEAAVSQIERAFGKGSIMKLGGKDQVVE-TEVVSTRILGLDVALGIGGVPRGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +E+YGPESSGKTTLALH IA++QK GGTCAFVDAEHALD  YARKLG  L  LLIS+PD 
Sbjct: 60  IEVYGPESSGKTTLALHIIAEAQKKGGTCAFVDAEHALDPSYARKLGA-LDELLISEPDA 118

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVR GAVD++V+DSVAAL PR E+EG+MG++  G+ ARLMSQALRKLT S
Sbjct: 119 GEQALEIADTLVRPGAVDVLVVDSVAALVPRGELEGEMGDNHMGLHARLMSQALRKLTGS 178

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +S+SK I++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR++IRRVG+IKD+D + GNQ
Sbjct: 179 VSKSKTIVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMEIRRVGAIKDRDEVVGNQ 238

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFK V+FDIMYGEGIS  GELIDLGVKA++V KSGAWFS+   R+GQG
Sbjct: 239 TRVKVVKNKLAPPFKVVDFDIMYGEGISKMGELIDLGVKANVVKKSGAWFSYNSTRIGQG 298

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           REN+K FLR+N  +A  IE  +RQNAGL++++L   P ++    A+
Sbjct: 299 RENAKQFLRDNPAMAAEIEGAIRQNAGLISEALAAVPDLDGTPVAE 344


>gi|255021553|ref|ZP_05293596.1| RecA protein [Acidithiobacillus caldus ATCC 51756]
 gi|254968941|gb|EET26460.1| RecA protein [Acidithiobacillus caldus ATCC 51756]
          Length = 347

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 229/344 (66%), Positives = 286/344 (83%), Gaps = 1/344 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +SKAL AALSQI + +GKGAIM+LG Q ++ + I+V S+GSLGLD+ALG+GG P+GR+VE
Sbjct: 5   RSKALAAALSQIDKQFGKGAIMRLGEQSAV-KDIQVYSTGSLGLDLALGVGGLPRGRVVE 63

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA  Q +GGT AF+DAEHALD  YA+KLGVDL+NLLISQPDTGE
Sbjct: 64  IYGPESSGKTTLTLHAIASCQASGGTAAFIDAEHALDPSYAQKLGVDLENLLISQPDTGE 123

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DMLVRSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++IS
Sbjct: 124 QALEIADMLVRSGAVDLIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIS 183

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           R+  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK  D I G+ TR
Sbjct: 184 RTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGTIKKGDEILGSDTR 243

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF++ EF I YGEGIS   EL+DLGVK  I++KSGAW+S+KG+R+GQG++
Sbjct: 244 VKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVKFDIIEKSGAWYSYKGERIGQGKD 303

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           N++ FL+E  E+A+ IE  +R  A     +  +E  +   +  D
Sbjct: 304 NARQFLKERPEMAKEIEERVRAAANGHPLAFAEEGPVVAAEAGD 347


>gi|148553436|ref|YP_001261018.1| recombinase A [Sphingomonas wittichii RW1]
 gi|148498626|gb|ABQ66880.1| recA protein [Sphingomonas wittichii RW1]
          Length = 357

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 237/348 (68%), Positives = 297/348 (85%), Gaps = 2/348 (0%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
            +E   +D+ KALEAAL+QI R +GKG+ M+LGS+ ++   +E +S+GSLGLDIALGIGG
Sbjct: 11  EREAANMDRQKALEAALAQIDRAFGKGSAMKLGSRETM--QVEAISTGSLGLDIALGIGG 68

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            PKGR+VE++GPESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+KLGV++  L+
Sbjct: 69  LPKGRVVEVFGPESSGKTTLALHAIAEAQKVGGTAAFIDAEHALDPVYAKKLGVNIDELI 128

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPDTGEQALEI D LVRS A+D++VIDSVAAL PRAEIEG+MG+S  G+QARLMSQAL
Sbjct: 129 VSQPDTGEQALEIADTLVRSNAIDVLVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQAL 188

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RK+T SISRSKC+++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR G+IKD+D
Sbjct: 189 RKITGSISRSKCLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRTGAIKDRD 248

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN TRVKVVKNK+A PFKQVEFDIMYGEG+S  GEL+DLGVKA +V+KSGAWFS+  
Sbjct: 249 EVVGNATRVKVVKNKVAPPFKQVEFDIMYGEGVSKVGELLDLGVKAGLVEKSGAWFSYDS 308

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
            R+GQGRENSK++LREN E+A  +E+ +R NA  V ++++  P+ +  
Sbjct: 309 IRIGQGRENSKVYLRENPEVAAKLEAAIRGNADGVGEAMMAGPSEDDD 356


>gi|25991703|gb|AAN76892.1| RecA [Burkholderia vietnamiensis]
 gi|25991705|gb|AAN76893.1| RecA [Burkholderia vietnamiensis]
          Length = 333

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 228/325 (70%), Positives = 284/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|313901810|ref|ZP_07835233.1| RecA protein [Thermaerobacter subterraneus DSM 13965]
 gi|313467930|gb|EFR63421.1| RecA protein [Thermaerobacter subterraneus DSM 13965]
          Length = 340

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 195/331 (58%), Positives = 267/331 (80%), Gaps = 1/331 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           ++++ +ALE AL+QI++ +GKG+IM++G   +    +EV+ +GSL LDIALG+GG P+GR
Sbjct: 1   MIERERALEMALNQIEKQFGKGSIMRMGEASARLN-VEVIPTGSLALDIALGVGGMPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EI+GPE+SGKTT+ALH +A +Q++GG  AF+DAEHALD +YA  LGVD+ NLLISQPD
Sbjct: 60  IIEIFGPEASGKTTVALHVVASAQRSGGVAAFIDAEHALDPVYAENLGVDINNLLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVD+IVIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKLT 
Sbjct: 120 TGEQALEIAEALVRSGAVDVIVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++S+  L+FINQ+R K+GVMFG+PE T GG ALKFY+SVRLD+RRV ++K    + G 
Sbjct: 180 AIAKSRTCLIFINQIREKVGVMFGNPEVTPGGRALKFYASVRLDVRRVETLKQGGEMIGI 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + R KVVKNK+A PF+Q EFD++YG+GIS  G+L+D+  +  I++K+GAW+S+   R+GQ
Sbjct: 240 RARAKVVKNKVAPPFRQAEFDLLYGKGISREGDLLDIATQHGIIEKAGAWYSYGDTRIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           GREN++ +L ++ E+A+ IE  LR+   L  
Sbjct: 300 GRENAREYLVQHPEVADAIERRLRELLSLGG 330


>gi|77919999|ref|YP_357814.1| recombinase A [Pelobacter carbinolicus DSM 2380]
 gi|77546082|gb|ABA89644.1| RecA protein [Pelobacter carbinolicus DSM 2380]
          Length = 341

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 214/342 (62%), Positives = 276/342 (80%), Gaps = 1/342 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   ++ +A++ A+ QI++ +GKG+IM+LG    I   +  + +G+L LDIALG+GG P+
Sbjct: 1   MTTDNRERAIDLAMGQIEKQFGKGSIMRLGEDA-IVPDVATIPTGALSLDIALGVGGVPR 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTTLALH +A++QK GG  AFVDAEHALD  YARKLGV   +LL+SQ
Sbjct: 60  GRIIEIYGPESSGKTTLALHIVAEAQKKGGIAAFVDAEHALDIHYARKLGVRTDDLLVSQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEIT++LVRSGA+D++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL
Sbjct: 120 PDTGEQALEITEVLVRSGAIDVLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T +I++S C ++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVR+DIR++ ++K    + 
Sbjct: 180 TGTINKSNCCVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRMDIRKIATLKQGQDVI 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G++TRVKVVKNK+A PFK+ EFDIMYG+GIS  G+++DLG  A IVDKSGAW+SF  +R+
Sbjct: 240 GSRTRVKVVKNKIAPPFKEAEFDIMYGQGISREGDVLDLGAAAEIVDKSGAWYSFDSERI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348
           GQGREN+K FLRE+ E  + IE  L ++ GL    +  E A 
Sbjct: 300 GQGRENAKQFLREHPETCQTIEDRLLEHYGLKQLPVAAEEAE 341


>gi|319431775|gb|ADP92391.2| recombinase [Burkholderia cepacia]
          Length = 329

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|256822657|ref|YP_003146620.1| recA protein [Kangiella koreensis DSM 16069]
 gi|256796196|gb|ACV26852.1| recA protein [Kangiella koreensis DSM 16069]
          Length = 346

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 231/344 (67%), Positives = 277/344 (80%), Gaps = 1/344 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL+QI+R +GKG+IM+LG   +   GI  +S+GSLGLDIALGIGG PKGR+V
Sbjct: 4   NKKKALGAALTQIERQFGKGSIMRLGDNSAAR-GIGTISTGSLGLDIALGIGGLPKGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLAL  IA  QK GGT AFVDAEHALD  YA KLGV+L +L++SQPDTG
Sbjct: 63  EIYGPESSGKTTLALQAIASCQKDGGTAAFVDAEHALDPTYAEKLGVNLDDLIVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSGAVDI+V+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 123 EQALEITDMLVRSGAVDIVVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  + VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G IK  D I GN+T
Sbjct: 183 KRSNTLCVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQIKQGDEIVGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF I+YGEG S  GE++D GVK  +V+KSGAW+S+ G ++GQG+
Sbjct: 243 RVKVVKNKVAPPFKQAEFQILYGEGTSLEGEILDWGVKHDLVEKSGAWYSYNGNKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           +N   FL++N +I E IE  LR    + A     + A   + +A
Sbjct: 303 QNVIQFLKDNADIKEEIEGKLRSELLVTAKKPADDEADVPEVEA 346


>gi|219669130|ref|YP_002459565.1| recA protein [Desulfitobacterium hafniense DCB-2]
 gi|219539390|gb|ACL21129.1| recA protein [Desulfitobacterium hafniense DCB-2]
          Length = 346

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 209/346 (60%), Positives = 274/346 (79%), Gaps = 1/346 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   DK KAL+ ALSQI++ +GKG+IM+LG   +    +EV+ +G L +DIALG+GG P+
Sbjct: 1   MAGNDKLKALDMALSQIEKQFGKGSIMRLGEASAKM-AVEVIPTGCLAIDIALGVGGVPR 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++EIYGPESSGKTT+ALH  A++QK GG  AF+DAEHALD +YA+ LGV++ NLL+SQ
Sbjct: 60  GRVIEIYGPESSGKTTVALHIAAEAQKLGGVAAFIDAEHALDPVYAKALGVNIDNLLVSQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI + LVRSGA+D+I+IDSVAAL PRAEIEG+MG+S  G+ ARLMSQALRKL
Sbjct: 120 PDTGEQALEICEALVRSGAIDVIIIDSVAALVPRAEIEGEMGDSHVGLHARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T +IS+S   ++FINQ+R K+G+MFG+PETTTGG ALKFY+SVRL++RR  ++K    + 
Sbjct: 180 TGAISKSNTCVIFINQIREKVGIMFGNPETTTGGRALKFYASVRLEVRRADTLKQGQDMI 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+T+VKVVKNK+A PFKQ EFDIMYGEGIS  G ++D+G +  I++KSGAW+S+KG+RL
Sbjct: 240 GNRTKVKVVKNKVAPPFKQAEFDIMYGEGISREGSMVDVGAELDIINKSGAWYSYKGERL 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GQGREN K FL++N EIA  IE  +R +   V+  +  +     +D
Sbjct: 300 GQGRENVKEFLKKNPEIAAEIEQGIRASIANVSAPVADDVQEEPED 345


>gi|118618697|ref|YP_907029.1| recombinase A [Mycobacterium ulcerans Agy99]
 gi|166220657|sp|A0PT89|RECA_MYCUA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|118570807|gb|ABL05558.1| recombinase A RecA [Mycobacterium ulcerans Agy99]
          Length = 346

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 205/342 (59%), Positives = 272/342 (79%), Gaps = 6/342 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI++ YGKG++M+LG +  + + I ++ +GS+ LD+ALGIGG P+GR+
Sbjct: 5   PDREKALELAMAQIEKSYGKGSVMRLGDE--VRQPISIIPTGSIALDVALGIGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 63  IEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T +
Sbjct: 123 GEQALEIVDMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+
Sbjct: 183 LNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVK+VKNK++ PFKQ EFDI+YG GIS  G LID+GV    + KSGAWF+++G++LGQG
Sbjct: 243 TRVKIVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGAWFTYEGEQLGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVA----DSLLQEPA 347
           +EN++ FL EN  +A  IE  +++  G+ A    D +L  P 
Sbjct: 303 KENARNFLLENGGVANEIEKKIKEKLGIGAVVTDDGVLPAPV 344


>gi|307825705|ref|ZP_07655922.1| recA protein [Methylobacter tundripaludum SV96]
 gi|307733282|gb|EFO04142.1| recA protein [Methylobacter tundripaludum SV96]
          Length = 345

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 222/343 (64%), Positives = 282/343 (82%), Gaps = 2/343 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG++M++G   +    I+VVS+GSLGLDIALG GG P+GR++
Sbjct: 4   NKKKALGAALMQIEKQFGKGSVMRMGDVAASR-DIDVVSTGSLGLDIALGCGGLPRGRVI 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AFVDAEHALD  YA K+GV++ +LL+SQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAEMQKLGGTAAFVDAEHALDPSYAEKIGVNVDDLLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSGAVD++VIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDMLVRSGAVDVVVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTGNI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  + + GN+T
Sbjct: 183 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGEEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF+I+YGEGISF GEL+DLGV    + K+G+W+S+  +++GQG+
Sbjct: 243 RVKVVKNKVAPPFRQAEFEILYGEGISFLGELVDLGVSYGFIQKAGSWYSYGDEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLR-QNAGLVADSLLQEPAINTKD 352
           +N K FLRE+ E A+ IE+ +R +  G     L++ P ++  +
Sbjct: 303 DNVKAFLREHPEKAKEIEAKIRAEAFGKKVAPLIEAPVVDEDE 345


>gi|300390225|gb|ADK10925.1| RecA [Thermoanaerobacterium saccharolyticum]
          Length = 343

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 214/349 (61%), Positives = 280/349 (80%), Gaps = 6/349 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           +++K KAL+ A+SQI+R +GKG+IM+LG    +   I+V+S+GS+ LDIALG+GG P+GR
Sbjct: 1   MIEKQKALDMAISQIERQFGKGSIMRLGDNSKL--NIDVISTGSIDLDIALGVGGVPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EI+GPESSGKTT+ALH +A++QK GGT AF+DAEHALD +YA+ +GV++ NLL+SQPD
Sbjct: 59  IIEIFGPESSGKTTIALHILAEAQKLGGTGAFIDAEHALDPVYAKNVGVNIDNLLVSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVD+IVIDSVAAL P+AEI+GDMG++  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIVEALVRSGAVDVIVIDSVAALVPKAEIDGDMGDAHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            IS++K + VFINQ+R K+GVMFG+PETT GG ALKFYS++RLD+R+V  IK  + I GN
Sbjct: 179 VISKTKSVAVFINQLREKVGVMFGNPETTPGGRALKFYSTIRLDVRKVDGIKQGNDIVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++DL     I+DKSGAW+S+   RLGQ
Sbjct: 239 RTRVKVVKNKVAPPFKQAEFDIMYGEGISREGSILDLAASIDIIDKSGAWYSYGDIRLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           GREN+K +L+EN  IA+ IE+ +R+N  L    L+        D+ ++D
Sbjct: 299 GRENAKQYLKENKAIADEIENKIRENFNL----LVTTKKSIVDDEVEQD 343


>gi|302670998|ref|YP_003830958.1| DNA recombination protein RecA [Butyrivibrio proteoclasticus B316]
 gi|302395471|gb|ADL34376.1| DNA recombination protein RecA [Butyrivibrio proteoclasticus B316]
          Length = 358

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 207/346 (59%), Positives = 270/346 (78%), Gaps = 1/346 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   DK KALEAAL QI++ +GKGA+M+LG        +E + +GSL LDIALG+GG PK
Sbjct: 1   MERKDKQKALEAALGQIEKQFGKGAVMKLGDSSDTMN-VETIPTGSLSLDIALGLGGIPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTT+ LH IA+ QK GG   F+DAEHALD +YA+ +GVD+ NL ISQ
Sbjct: 60  GRIIEIYGPESSGKTTVTLHMIAEVQKRGGIAGFIDAEHALDPVYAKNIGVDVDNLYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+GEQALEIT+ +VRSGA+DI+V+DSVAAL P+AEI+GDMG+S  G+QARLMSQALRKL
Sbjct: 120 PDSGEQALEITETMVRSGAIDIVVVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+ IS+S C +VFINQ+R K+GVMFG+PETTTGG ALKFYSSVR+D+RR+ +IK    + 
Sbjct: 180 TAVISKSNCTVVFINQLREKVGVMFGNPETTTGGRALKFYSSVRMDVRRIEAIKQNGEVI 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFK+ EFDIM+G+GIS  G+++DL     IV+KSGAW+ ++G+++
Sbjct: 240 GNRTRVKVVKNKIAPPFKEAEFDIMFGKGISATGDILDLAAGVDIVNKSGAWYQYEGEKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GQGREN+K++L  N  I   I++ +R + GL  + +         +
Sbjct: 300 GQGRENAKLYLENNPAILAEIDAKVRAHYGLPVNGVTVPDKGEATE 345


>gi|163839478|ref|YP_001623883.1| recombinase A [Renibacterium salmoninarum ATCC 33209]
 gi|162952954|gb|ABY22469.1| RecA recombinase [Renibacterium salmoninarum ATCC 33209]
          Length = 386

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 206/342 (60%), Positives = 271/342 (79%), Gaps = 2/342 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALEAAL+QI + +GKG+IM+LG +  +   IE + +GS+ LD+ALGIGG P+GRI
Sbjct: 40  ADREKALEAALAQIDKQFGKGSIMRLGDE--VRAPIETIPTGSIALDVALGIGGLPRGRI 97

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD+  LL+SQPDT
Sbjct: 98  VEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPDYAAKLGVDVDALLVSQPDT 157

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+ SG++DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T  
Sbjct: 158 GEQALEIMDMLIGSGSLDIVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGR 217

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +S++K   +FINQ+R KIGV FGSPETT+GG ALKFY+SVR+D+RR+ ++K+     GN+
Sbjct: 218 LSQTKTTAIFINQLREKIGVFFGSPETTSGGKALKFYASVRIDVRRIQTLKEGADSVGNR 277

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           T+ K+VKNKMA PFK  EFDI+YG+GIS  G +ID+GV+  I+ KSG+WF+++G +LGQG
Sbjct: 278 TKAKIVKNKMAPPFKIAEFDIIYGQGISREGGIIDMGVEHGIIKKSGSWFTYEGDQLGQG 337

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
            ENS+ FLR+N E+AE +E L+++  G+   +   E    +K
Sbjct: 338 MENSRRFLRDNPELAEELERLIKEKLGVGVKATTSEDEAASK 379


>gi|30313402|gb|AAM55295.1| RecA [Burkholderia cepacia]
          Length = 333

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|25991745|gb|AAN76913.1| RecA [Burkholderia cepacia]
          Length = 333

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GDATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+V+
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVS 324


>gi|4768851|gb|AAD29645.1|AF124757_5 RecA protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 339

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 240/335 (71%), Positives = 289/335 (86%), Gaps = 2/335 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK KALEAAL+QI R +GKG++M+LGS+  I   I+ +SSGSLGLDIALGIGG P+GRI
Sbjct: 1   MDKQKALEAALAQIDRAFGKGSVMRLGSREKI--EIDTISSGSLGLDIALGIGGLPRGRI 58

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+KLGV+  +L++SQPDT
Sbjct: 59  VEIYGPESSGKTTLALHAIAEAQKAGGTAAFVDAEHALDPVYAKKLGVNTDDLIVSQPDT 118

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD L+RS AVDI+V+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T S
Sbjct: 119 GEQALEITDTLIRSNAVDILVVDSVAALTPRAEIEGEMGDSHVGLQARLMSQALRKITGS 178

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I+RS+ +++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRRVG IKD+D I GN 
Sbjct: 179 INRSQTLVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRVGQIKDRDEIVGNA 238

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+  PFKQVEFDIMYGEG+S  GE++DLGVKA I+DKSG+WFS    R+GQG
Sbjct: 239 TRVKVVKNKLLRPFKQVEFDIMYGEGVSKMGEILDLGVKAGIIDKSGSWFSHDSVRIGQG 298

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
           REN+K FLRE+ E+ E IE ++R N   +AD +L 
Sbjct: 299 RENAKTFLREHPEMTEKIEKMIRHNTAEIADEMLD 333


>gi|315648061|ref|ZP_07901162.1| recA protein [Paenibacillus vortex V453]
 gi|315276707|gb|EFU40050.1| recA protein [Paenibacillus vortex V453]
          Length = 353

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 221/355 (62%), Positives = 275/355 (77%), Gaps = 2/355 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  ALE AL QI++ +GKG+IM+LG    +   +E+V SGSL LDIALG GG PKGR
Sbjct: 1   MSDRRAALEMALRQIEKQFGKGSIMKLGESTHM--QVEIVPSGSLALDIALGTGGLPKGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD  YA KLGV++  LL+SQPD
Sbjct: 59  IIEVYGPESSGKTTVALHAIAEVQKAGGQAAFIDAEHALDPSYASKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRLD+RR+ SIK  + + GN
Sbjct: 179 AINKSKTITIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRIESIKMGNDVVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TR+KVVKNK+A PFKQ E DIMYGEGIS  G LID+G +  IVDKSGAW+S+ G RLGQ
Sbjct: 239 RTRIKVVKNKVAPPFKQAELDIMYGEGISREGSLIDIGTELDIVDKSGAWYSYSGDRLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           GREN+K FL+E+ EIA  IE+ +R+ + L             +D+ ++ +   VE
Sbjct: 299 GRENAKQFLKEHPEIASVIENKIREASNLTTAVPEPSAEDKEQDEIEEQELFKVE 353


>gi|295395410|ref|ZP_06805609.1| recombination protein A [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971732|gb|EFG47608.1| recombination protein A [Brevibacterium mcbrellneri ATCC 49030]
          Length = 350

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 211/346 (60%), Positives = 273/346 (78%), Gaps = 2/346 (0%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
              ++  +K KALE ALSQ++R YGKG+IM+LGSQ    + IE + +GSL LD+ALGIGG
Sbjct: 7   NTNVSADNKQKALETALSQVERQYGKGSIMRLGSQER--QPIEAIPTGSLALDVALGIGG 64

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P+GR++E+YGPESSGKTT+ALH +A +QK GG  AF+DAEHALD  YA KLGVD   LL
Sbjct: 65  LPRGRVIEVYGPESSGKTTVALHAVANAQKAGGLAAFIDAEHALDPEYAAKLGVDTDQLL 124

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQAL
Sbjct: 125 VSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQAL 184

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RK+T +++ SK   +FINQ+R K+GV FGSPETT+GG ALKFY+SVRLD+RR+ ++K+  
Sbjct: 185 RKITGALAHSKTTAIFINQLREKVGVFFGSPETTSGGKALKFYASVRLDVRRIETLKEGT 244

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
              GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS  G +ID+GV+  IV KSG+WF++ G
Sbjct: 245 DAVGNKTRVKVVKNKVAPPFKQAEFDIIYGQGISREGSIIDMGVENGIVRKSGSWFTYDG 304

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
            +LGQG+EN + FLR+N E+A+ IE+ +    G++ D   ++    
Sbjct: 305 DQLGQGKENVRNFLRDNPELADEIETKILMKLGIIEDEAEEQKPQE 350


>gi|160858118|emb|CAP18006.1| DNA recombinase [Burkholderia contaminans]
 gi|160858120|emb|CAP18007.1| DNA recombinase [Burkholderia contaminans]
          Length = 338

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 229/327 (70%), Positives = 284/327 (86%), Gaps = 1/327 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEI
Sbjct: 1   SKALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R
Sbjct: 120 ALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKR 179

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           + C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRV
Sbjct: 180 TNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N
Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299

Query: 313 SKIFLRENIEIAENIESLLRQNAGLVA 339
           ++ FLREN EIA  IE+ +R++ G+V 
Sbjct: 300 AREFLRENPEIAREIENRIRESLGVVT 326


>gi|167748884|ref|ZP_02421011.1| hypothetical protein ANACAC_03658 [Anaerostipes caccae DSM 14662]
 gi|317470274|ref|ZP_07929668.1| recA bacterial DNA recombination protein [Anaerostipes sp.
           3_2_56FAA]
 gi|167651854|gb|EDR95983.1| hypothetical protein ANACAC_03658 [Anaerostipes caccae DSM 14662]
 gi|316902247|gb|EFV24167.1| recA bacterial DNA recombination protein [Anaerostipes sp.
           3_2_56FAA]
          Length = 349

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 207/346 (59%), Positives = 276/346 (79%), Gaps = 1/346 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K KAL+AAL++I++ YGKGA+M+LG   +    IE   +GSL LDIALG+GG P+
Sbjct: 1   MQQTEKLKALDAALTKIEKDYGKGAVMKLGEYQADM-SIETTPTGSLSLDIALGVGGIPR 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++EIYGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YA+ +GVD+ NL ISQ
Sbjct: 60  GRVIEIYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAQNIGVDVDNLYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQ LEI + +VRSGAVDII++DSVAAL P+AEI+GDMG+S  G+QARLMSQALRKL
Sbjct: 120 PDTGEQGLEIAETMVRSGAVDIIIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+ IS+S C ++FINQ+R K+GVMFG+PETTTGG ALKFYSS+RLD+RR+ ++K    + 
Sbjct: 180 TAIISKSNCTVIFINQLREKVGVMFGNPETTTGGRALKFYSSIRLDVRRIETLKQAGDMV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR+KVVKNK+A PFKQ EFDIM+GEGIS  G+++DL     ++ KSGAW++++G+++
Sbjct: 240 GNRTRIKVVKNKVAPPFKQAEFDIMFGEGISKEGDILDLAAGVDVIKKSGAWYAYQGEKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GQGREN+K +L+E+ E+A+ +ES +R+  GL A +    PA    D
Sbjct: 300 GQGRENAKTYLKEHPEVAQEVESAVRREYGLEAGTEDAAPAEEKPD 345


>gi|209967941|gb|ACB12745.2| RecA [Burkholderia cepacia]
          Length = 338

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 230/342 (67%), Positives = 290/342 (84%), Gaps = 4/342 (1%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEI
Sbjct: 1   SKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPES+GKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQ
Sbjct: 60  YGPESTGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R
Sbjct: 120 ALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKR 179

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           + C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRV
Sbjct: 180 TNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N
Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299

Query: 313 SKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           ++ FLREN EIA  IE+ +R++ G+V    + + A   + +A
Sbjct: 300 AREFLRENPEIAREIENRIRESLGVVT---MPDGAAQDEAEA 338


>gi|54633814|gb|AAV36017.1| RecA [Burkholderia sp. KBC-1]
          Length = 328

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 226/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+V 
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVT 324


>gi|325290320|ref|YP_004266501.1| RecA protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324965721|gb|ADY56500.1| RecA protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 348

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 208/355 (58%), Positives = 276/355 (77%), Gaps = 7/355 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+  DK KAL+ AL QI++ +GKGA+M+LG   +    IEV+S+G+L LD+ALG GG P+
Sbjct: 1   MSGTDKLKALDIALGQIEKQFGKGAVMRLGEASTKM-AIEVISTGALALDVALGAGGVPR 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTT+ALH IA++QK GG  AF+DAEHALD  YA+ LGV+   LLISQ
Sbjct: 60  GRVVEIYGPESSGKTTVALHVIAEAQKAGGVAAFIDAEHALDPEYAKALGVNTDELLISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI + LVRSGA+D++VIDSVAAL PRAEIEG+MG+S  G+ ARLMSQALRKL
Sbjct: 120 PDTGEQALEICEALVRSGAIDVVVIDSVAALVPRAEIEGEMGDSHVGLHARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T +IS+S+  +VFINQ+R K+G+MFG+PETTTGG ALKFY+SVRL++++   IK    + 
Sbjct: 180 TGAISKSRTCVVFINQIREKVGIMFGNPETTTGGRALKFYASVRLEVKKQDVIKQGQDVI 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PF   +FDI+YGEGIS  G L+DLG + +IV KSGAW+S++G+RL
Sbjct: 240 GNRTRVKVVKNKIAPPFNHADFDIIYGEGISREGSLVDLGAETTIVTKSGAWYSYQGERL 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           GQGRE++K +LR++ E+ + IE+ +R+        L+ +       +AD + ++ 
Sbjct: 300 GQGRESAKEYLRDHPEVRQEIEAKIREKL------LVNKGKSPASSEADPESSEE 348


>gi|147677636|ref|YP_001211851.1| RecA/RadA recombinase [Pelotomaculum thermopropionicum SI]
 gi|146273733|dbj|BAF59482.1| RecA/RadA recombinase [Pelotomaculum thermopropionicum SI]
          Length = 342

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 210/345 (60%), Positives = 275/345 (79%), Gaps = 4/345 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+ KALE AL QI+R +GKG+IM+LG   +    +EV+ +G+L LDIALG+GG P+GR
Sbjct: 1   MSDRQKALELALMQIERQFGKGSIMKLGEASAKLN-VEVIPTGALALDIALGVGGVPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EI+GPESSGKTT+ALH IA++QK GGT AFVDAEHALD +YA+ LGVD++NLL+SQPD
Sbjct: 60  VIEIFGPESSGKTTVALHVIAEAQKMGGTAAFVDAEHALDPVYAKNLGVDIENLLVSQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVD+IV+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKLT 
Sbjct: 120 TGEQALEIAEALVRSGAVDVIVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +IS+S+  ++FINQ+R K+GV++GSPETTTGG ALKFY+S+RL++R+  +IK    I G+
Sbjct: 180 AISKSRTTVIFINQIREKVGVVYGSPETTTGGRALKFYASIRLEVRKQENIKQGTDIIGS 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFKQ +FDIMYG GIS  G ++D+  + +IV+KSGAW+SF  +RLGQ
Sbjct: 240 RTRVKVVKNKVAPPFKQADFDIMYGTGISKEGSILDMATELNIVEKSGAWYSFGEERLGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           GREN K +LRE+ EI   IE  +RQ   +      + PA    ++
Sbjct: 300 GRENVKEYLREHPEITREIERKVRQALNVGG---FKAPAATVSEE 341


>gi|300113490|ref|YP_003760065.1| recA protein [Nitrosococcus watsonii C-113]
 gi|299539427|gb|ADJ27744.1| recA protein [Nitrosococcus watsonii C-113]
          Length = 342

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 224/340 (65%), Positives = 287/340 (84%), Gaps = 1/340 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL AALSQI++ +GKGA+M+LG   SI   +EV+S+GSLGLDIALG+GG P+GR+V
Sbjct: 4   NRKKALGAALSQIEKQFGKGAVMRLGD-ASIVREVEVISTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPE+SGKTTLAL   A++Q  GGT AFVDAEHALD  YA +LGV++++LL+SQPDTG
Sbjct: 63  EIFGPEASGKTTLALQVAAEAQALGGTAAFVDAEHALDPQYAERLGVNVEDLLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGAVD++VIDSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 123 EQALEIADMLVRSGAVDVVVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRRVG++K  D I GN+T
Sbjct: 183 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGALKKGDEIVGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFKQV FDI+YG G+S  GE+IDLGV+  +++K+GAW+S+KG+R+GQGR
Sbjct: 243 RVKVVKNKMAPPFKQVSFDILYGSGVSREGEIIDLGVREGLIEKAGAWYSYKGERIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           +N + FL+E+ +IA+ IE+ +R+       +L +   + T
Sbjct: 303 DNVRQFLKEHRDIAQEIEAHIREKLLPGKAALEEVEEVGT 342


>gi|150171054|emb|CAO01510.1| DNA recombination protein [Burkholderia seminalis]
          Length = 338

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 227/327 (69%), Positives = 284/327 (86%), Gaps = 1/327 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEI
Sbjct: 1   SKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R
Sbjct: 120 ALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKR 179

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRV
Sbjct: 180 TNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRV 239

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N
Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299

Query: 313 SKIFLRENIEIAENIESLLRQNAGLVA 339
           ++ FLREN EIA  IE+ +R++ G+ +
Sbjct: 300 AREFLRENPEIAREIENRIRESLGVAS 326


>gi|117924908|ref|YP_865525.1| recA protein [Magnetococcus sp. MC-1]
 gi|117608664|gb|ABK44119.1| RecA protein [Magnetococcus sp. MC-1]
          Length = 390

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 236/342 (69%), Positives = 286/342 (83%), Gaps = 3/342 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKSKAL+AAL+QI+R +GKG+IM++    +    I VVS+GSLGLDIALG+GG P+GRIV
Sbjct: 15  DKSKALDAALAQIERQFGKGSIMRMSEGAAT--DIPVVSTGSLGLDIALGVGGLPRGRIV 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH  A+ QK GG  AFVDAEHALD IYARKLGV++  L+ISQPDTG
Sbjct: 73  EVYGPESSGKTTMALHVAAEIQKVGGVAAFVDAEHALDPIYARKLGVNVDELIISQPDTG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSGAVD++V+DSVAALTPRAE+EG+MG+S  G+QARLMSQALRKLT SI
Sbjct: 133 EQALEITDMLVRSGAVDLVVVDSVAALTPRAELEGEMGDSHVGLQARLMSQALRKLTGSI 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SRS  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIKDK+ + GN+T
Sbjct: 193 SRSSSLVLFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKDKEEVVGNRT 252

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PF+Q EFDI YG+G+S  GEL+D+GV+  +V+KSGAW+S+ G+R+GQGR
Sbjct: 253 RVKVVKNKMAPPFRQCEFDITYGQGVSLHGELLDMGVEMGVVEKSGAWYSYDGERIGQGR 312

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD-SLLQEPAINTK 351
           EN+K ++ EN   A  +E  +R   GL A     Q PA  TK
Sbjct: 313 ENAKRYMAENPSAAMKLEDQIRLKEGLSAKHGAGQSPATETK 354


>gi|258623517|ref|ZP_05718518.1| recA protein [Vibrio mimicus VM573]
 gi|258623801|ref|ZP_05718758.1| recA protein [Vibrio mimicus VM603]
 gi|258583924|gb|EEW08716.1| recA protein [Vibrio mimicus VM603]
 gi|258584179|gb|EEW08927.1| recA protein [Vibrio mimicus VM573]
          Length = 406

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 211/354 (59%), Positives = 278/354 (78%), Gaps = 2/354 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           DY + +   +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG 
Sbjct: 47  DYPERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 104

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  
Sbjct: 105 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 164

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 165 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 224

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 225 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 284

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+
Sbjct: 285 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSY 344

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            G ++GQG+ N+  +L+EN EIA+ ++  LR+      +  L     +  DD +
Sbjct: 345 NGDKIGQGKANACKYLKENTEIAKTLDKKLREMLLNPENMQLTGETSSAADDVE 398


>gi|70904853|gb|AAZ14006.1| RecA [Burkholderia cepacia]
          Length = 326

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 228/325 (70%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GDATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|283481767|emb|CBA10138.1| recombinase A [Agrobacterium tumefaciens]
          Length = 317

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 251/316 (79%), Positives = 289/316 (91%), Gaps = 1/316 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRIVEI
Sbjct: 1   SKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRIVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+
Sbjct: 120 ALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISK 179

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQTRV
Sbjct: 180 SKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQTRV 239

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQGREN
Sbjct: 240 KVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGREN 299

Query: 313 SKIFLRENIEIAENIE 328
           +K FLR+N E A  IE
Sbjct: 300 AKTFLRDNPETANEIE 315


>gi|295810382|emb|CBL81075.1| recombinase A [Agrobacterium larrymoorei]
          Length = 319

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 251/320 (78%), Positives = 290/320 (90%), Gaps = 1/320 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVIE-VETVSTGSLSLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +SK +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQTR
Sbjct: 180 KSKTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQTR 239

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQGR 
Sbjct: 240 VKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGRX 299

Query: 312 NSKIFLRENIEIAENIESLL 331
           N+K FLR+N  +A  IE  L
Sbjct: 300 NAKGFLRDNPAVANEIEXAL 319


>gi|254479108|ref|ZP_05092460.1| protein RecA [Carboxydibrachium pacificum DSM 12653]
 gi|214034957|gb|EEB75679.1| protein RecA [Carboxydibrachium pacificum DSM 12653]
          Length = 341

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 218/343 (63%), Positives = 278/343 (81%), Gaps = 2/343 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           +++K KALE A+SQI+R +GKGAIM+LG    +   +EV+ +GSL LDIALG+GG P+GR
Sbjct: 1   MIEKQKALEMAISQIERQFGKGAIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EI+GPESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGV++ +LL++QPD
Sbjct: 59  IIEIFGPESSGKTTLALHMIAEAQKIGGTGAFIDAEHALDPVYAKNLGVNIDDLLVAQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL  
Sbjct: 119 TGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLAG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
             S+SK I+VFINQ+R K+GVMFG+PETT GG ALKFY+++RLD+R+V +IK  + I G+
Sbjct: 179 VTSKSKSIVVFINQLREKVGVMFGNPETTPGGRALKFYATIRLDVRKVDNIKQGNEIVGS 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++DLG    I++KSG+W+S+K  +LGQ
Sbjct: 239 RTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILDLGTALDIIEKSGSWYSYKDIKLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           GREN+K FL+EN EIAE IE  +R+N  L  + +   P    +
Sbjct: 299 GRENAKQFLKENKEIAEEIERKIRENFNLAYNKIKSAPDAIVE 341


>gi|184201230|ref|YP_001855437.1| RecA protein [Kocuria rhizophila DC2201]
 gi|183581460|dbj|BAG29931.1| RecA protein [Kocuria rhizophila DC2201]
          Length = 368

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 211/349 (60%), Positives = 268/349 (76%), Gaps = 2/349 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+  LSQI + YGKG++M+LG + +    IE + +GS+ LD+ALGIGGFP+
Sbjct: 1   MAGSDRQKALDTVLSQIDKNYGKGSVMRLGDRPAT--KIETIPTGSIALDVALGIGGFPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTT+ALH +A  QK+GG  AF+DAEHALD  YA KLGVD  NLL+SQ
Sbjct: 59  GRVVEIYGPESSGKTTVALHAVASVQKSGGIAAFIDAEHALDPAYAEKLGVDTDNLLVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI DMLV SG++DI+VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDTGEQALEIMDMLVGSGSIDIVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T  +S +    +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  
Sbjct: 179 TGRLSHTNTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRVDVRRIETLKDGANPV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR K+VKNKMA PFKQ EFDI+YG+GIS  G LID+GV+  IV KSGAWF+++G +L
Sbjct: 239 GNRTRAKIVKNKMAPPFKQAEFDILYGQGISIEGGLIDMGVEHGIVKKSGAWFTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           GQG+ENS+ FL++N E+A+ IE  +    G+  D           +  D
Sbjct: 299 GQGKENSRRFLKDNPELAQEIERKILIKLGISEDPDEATQDAEGAEAVD 347


>gi|25229189|gb|AAN74664.1| RecA [Burkholderia cepacia]
 gi|25229191|gb|AAN74665.1| RecA [Burkholderia cepacia]
 gi|25229193|gb|AAN74666.1| RecA [Burkholderia cepacia]
 gi|25229195|gb|AAN74667.1| RecA [Burkholderia cepacia]
          Length = 333

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEATEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|42416893|gb|AAS16328.1| RecA [Mycobacterium mucogenicum]
          Length = 350

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 204/330 (61%), Positives = 264/330 (80%), Gaps = 2/330 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE AL+QI + +GKG++M+LG +    + I  + +GS+ LD+ALGIGG P+GR+
Sbjct: 6   PDREKALELALAQIDKSFGKGSVMRLGEETR--QPISDIPTGSIALDVALGIGGLPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD   LL+SQPDT
Sbjct: 64  IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 124 GEQALEIADMLVRSGAMDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+
Sbjct: 184 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVK+VKNK+A PFKQ EFDI+YG GIS  G LID+GV+   + KSG+WF++ G++LGQG
Sbjct: 244 TRVKIVKNKVAPPFKQAEFDILYGRGISREGSLIDMGVEHGFIRKSGSWFTYDGEQLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +EN++ FL EN++ A  IE  +++  G+ A
Sbjct: 304 KENARNFLLENVDAANEIEKKIKEKLGIGA 333


>gi|89894689|ref|YP_518176.1| hypothetical protein DSY1943 [Desulfitobacterium hafniense Y51]
 gi|89334137|dbj|BAE83732.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 346

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 209/346 (60%), Positives = 274/346 (79%), Gaps = 1/346 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   DK KAL+ ALSQI++ +GKG+IM+LG   +    +EV+ +G L +DIALG+GG P+
Sbjct: 1   MAGNDKLKALDMALSQIEKQFGKGSIMRLGEASAKM-AVEVIPTGCLAIDIALGVGGVPR 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++EIYGPESSGKTT+ALH  A++QK GG  AF+DAEHALD +YA+ LGV++ NLL+SQ
Sbjct: 60  GRVIEIYGPESSGKTTVALHIAAEAQKLGGVAAFIDAEHALDPVYAKALGVNIDNLLVSQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI + LVRSGA+D+I+IDSVAAL PRAEIEG+MG+S  G+ ARLMSQALRKL
Sbjct: 120 PDTGEQALEICEALVRSGAIDVIIIDSVAALVPRAEIEGEMGDSHVGLHARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T +IS+S   ++FINQ+R K+G+MFG+PETTTGG ALKFY+SVRL++RR  ++K    + 
Sbjct: 180 TGAISKSNTCVIFINQIREKVGIMFGNPETTTGGRALKFYASVRLEVRRADTLKQGQDMI 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+T+VKVVKNK+A PFKQ EFDIMYGEGIS  G ++D+G +  I++KSGAW+S+KG+RL
Sbjct: 240 GNRTKVKVVKNKVAPPFKQAEFDIMYGEGISREGSMVDVGAELDIINKSGAWYSYKGERL 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GQGREN K FL++N EIA  IE  +R +   V+  +  +     +D
Sbjct: 300 GQGRENVKEFLKKNPEIAAEIEQGIRASIANVSAPVADDVQEEQED 345


>gi|150171047|emb|CAO01507.1| DNA recombination protein [Burkholderia metallica]
          Length = 334

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 228/335 (68%), Positives = 287/335 (85%), Gaps = 3/335 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G      E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-AEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLV--ADSLLQEPA 347
            FLREN EIA  IE+ +R++ G+V   D ++++ A
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVTMPDGVVEDEA 334


>gi|70904847|gb|AAZ14003.1| RecA [Burkholderia cepacia]
          Length = 326

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 228/325 (70%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|311030057|ref|ZP_07708147.1| recombinase A [Bacillus sp. m3-13]
          Length = 346

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 213/349 (61%), Positives = 269/349 (77%), Gaps = 4/349 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG Q      I  + SGSL LD+ALG GG+P+GR
Sbjct: 1   MSDRKAALDMALKQIEKQFGKGSIMKLGEQTE--RKISTIPSGSLALDVALGAGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTT+ALH IA+ Q+ GG  AF+DAEHALD +YA+KLGV++  LL+SQPD
Sbjct: 59  VVEIYGPESSGKTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDIIV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGHDIVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK+A PFK  E DIMYGEGIS  GE+ID+G    IV KSG+W+S+  +RLGQ
Sbjct: 239 KTKIKVVKNKIAPPFKVAEVDIMYGEGISREGEVIDMGSDLDIVQKSGSWYSYNEERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           GREN+K FL+EN +I + I   +R + GL  D  L  PA    D  + D
Sbjct: 299 GRENAKQFLKENKDILKEIHQQIRDHHGL--DKDLTAPAEEEMDQEELD 345


>gi|25229185|gb|AAN74662.1| RecA [Burkholderia stabilis]
 gi|25991733|gb|AAN76907.1| RecA [Burkholderia stabilis]
          Length = 333

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|25229197|gb|AAN74668.1| RecA [Burkholderia cepacia]
 gi|25229199|gb|AAN74669.1| RecA [Burkholderia cepacia]
 gi|25991695|gb|AAN76888.1| RecA [Burkholderia cepacia]
 gi|25991755|gb|AAN76918.1| RecA [Burkholderia cepacia]
 gi|54633818|gb|AAV36019.1| RecA [Burkholderia sp. KBC-3]
          Length = 333

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|323356753|ref|YP_004223149.1| RecA/RadA recombinase [Microbacterium testaceum StLB037]
 gi|323273124|dbj|BAJ73269.1| RecA/RadA recombinase [Microbacterium testaceum StLB037]
          Length = 350

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 212/343 (61%), Positives = 270/343 (78%), Gaps = 2/343 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +  ++ KALE+AL+QI R +GKG++M+LGS       IE + +GS+ LD+ALGIGG P+G
Sbjct: 3   SPAEREKALESALAQIDRQFGKGSVMRLGSDDRA--PIETIPTGSVALDVALGIGGLPRG 60

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EIYGPESSGKTTL LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQP
Sbjct: 61  RIIEIYGPESSGKTTLTLHAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQP 120

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI DML+RSGA+D++VIDSVAAL P AEI+G+MG+S  G+QARLMSQALRKLT
Sbjct: 121 DTGEQALEIADMLIRSGAIDLVVIDSVAALVPEAEIKGEMGDSHVGLQARLMSQALRKLT 180

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
             ++ +K   +FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     G
Sbjct: 181 GGLNTTKTTAIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVG 240

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+TRVKVVKNKMA PFKQ EFDI+YG GIS  G LID GV+  IV KSGAW++++G++LG
Sbjct: 241 NRTRVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDFGVEHGIVKKSGAWYTYEGEQLG 300

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           QG+EN++ FL +N ++A  IES ++   G+ A +   EPA + 
Sbjct: 301 QGKENARNFLIKNADVAAEIESKIKNKLGIGAPAAPAEPAADE 343


>gi|269219572|ref|ZP_06163426.1| protein RecA [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269210814|gb|EEZ77154.1| protein RecA [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 348

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 206/344 (59%), Positives = 269/344 (78%), Gaps = 2/344 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D++KAL+ ALSQI R +GKG++M+LG    +   I+V+ +G+  LD+ALG+GG P+GR++
Sbjct: 7   DRAKALDVALSQIDRQFGKGSVMRLGDH--VQTKIQVIPTGATSLDVALGVGGLPRGRVI 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A +QK GG  AF+DAEHALD  YA+KLGVD   L++SQPDTG
Sbjct: 65  EVYGPESSGKTTVALHAVANAQKNGGIAAFIDAEHALDPEYAKKLGVDTDALIVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DIIV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 125 EQALEIADMLIRSGALDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S S    +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLD+RR+ ++K+     GN+T
Sbjct: 185 SASGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDVRRIETLKEGSEPVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFKQ EFDIMYG+GIS  G +ID+GV   IV KSGAW+++ G +LGQG+
Sbjct: 245 RVKVVKNKMAPPFKQAEFDIMYGQGISREGCIIDMGVDGGIVRKSGAWYTYDGDQLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           E ++ FLR+N EIA+ IE  +    G+  +    + + N  D+ 
Sbjct: 305 EKARHFLRDNPEIADEIEGKILAKMGIAPEPDEGKDSQNAADEV 348


>gi|308274547|emb|CBX31146.1| Protein recA [uncultured Desulfobacterium sp.]
          Length = 365

 Score =  381 bits (978), Expect = e-104,   Method: Composition-based stats.
 Identities = 213/346 (61%), Positives = 280/346 (80%), Gaps = 4/346 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N +DK KA++AA+ QI+R +GKG++M+LGS+  +   I V+ +GSL LD ALG+GG P+G
Sbjct: 22  NAMDKEKAIDAAIGQIERQFGKGSVMKLGSRPVV--DIPVIPTGSLALDRALGVGGLPRG 79

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R++E++GPESSGKTTLAL  ++++QK GG  A++DAEHALD+ YA+ +GV+   LLI+QP
Sbjct: 80  RVIEVFGPESSGKTTLALSCVSEAQKQGGIAAYIDAEHALDTSYAKVIGVNCDELLIAQP 139

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQ LEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT
Sbjct: 140 DTGEQGLEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEMGDSHMGLQARLMSQALRKLT 199

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            +I ++   ++FINQ+RMKIGV+FG+PETTTGGNALKFYSSVRLDIRR  SIKD   +TG
Sbjct: 200 GTIGKTMTSVIFINQIRMKIGVVFGNPETTTGGNALKFYSSVRLDIRRTASIKDGQEVTG 259

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+TRV+VVKNKMA PF++ EFDIMY EGIS  G++ID+G    ++DKSGAW+S+ G+R+G
Sbjct: 260 NRTRVRVVKNKMAPPFREAEFDIMYNEGISKTGDIIDMGADLGVIDKSGAWYSYNGERIG 319

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVA--DSLLQEPAINTK 351
           QGREN K FL+EN +I  +I   +R+ AG++   + ++ E   NT+
Sbjct: 320 QGRENVKKFLKENPDIFNSIHLKVREVAGIIPVKEEIITEVKSNTE 365


>gi|25991739|gb|AAN76910.1| RecA [Burkholderia cepacia]
          Length = 333

 Score =  381 bits (978), Expect = e-104,   Method: Composition-based stats.
 Identities = 227/325 (69%), Positives = 284/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|24212187|sp|Q8RA55|RECA_THETN RecName: Full=Protein RecA; AltName: Full=Recombinase A
          Length = 342

 Score =  381 bits (978), Expect = e-104,   Method: Composition-based stats.
 Identities = 218/343 (63%), Positives = 278/343 (81%), Gaps = 2/343 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           +++K KALE A+SQI+R +GKGAIM+LG    +   +EV+ +GSL LDIALG+GG P+GR
Sbjct: 2   MIEKQKALEMAISQIERQFGKGAIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EI+GPESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGV++ +LL++QPD
Sbjct: 60  IIEIFGPESSGKTTLALHMIAEAQKIGGTGAFIDAEHALDPVYAKNLGVNIDDLLVAQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL  
Sbjct: 120 TGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLAG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
             S+SK I+VFINQ+R K+GVMFG+PETT GG ALKFY+++RLD+R+V +IK  + I G+
Sbjct: 180 VTSKSKSIVVFINQLREKVGVMFGNPETTPGGRALKFYATIRLDVRKVDNIKQGNEIVGS 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++DLG    I++KSG+W+S+K  +LGQ
Sbjct: 240 RTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILDLGTALDIIEKSGSWYSYKDIKLGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           GREN+K FL+EN EIAE IE  +R+N  L  + +   P    +
Sbjct: 300 GRENAKQFLKENKEIAEEIERKIRENFNLAYNKIKSAPDAIVE 342


>gi|85712116|ref|ZP_01043169.1| RecA recombinase [Idiomarina baltica OS145]
 gi|85694106|gb|EAQ32051.1| RecA recombinase [Idiomarina baltica OS145]
          Length = 360

 Score =  381 bits (978), Expect = e-104,   Method: Composition-based stats.
 Identities = 233/351 (66%), Positives = 285/351 (81%), Gaps = 9/351 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+SKAL+AALSQI+R +GKG+IM+LG   ++   I  VS+GSLGLD+ALGIGG P GR+V
Sbjct: 4   DRSKALDAALSQIERQFGKGSIMRLGDNQTM--DIASVSTGSLGLDVALGIGGLPFGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD IYA  LGV + +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAEAQKAGKTCAFVDAEHALDPIYAEALGVRVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGAVD++++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLTS+I
Sbjct: 122 EQALEICDMLVRSGAVDVVIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTSNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  + +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR G++K+ D + GN+T
Sbjct: 182 KKSNSLCIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGALKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK+  F IMYG GIS  GEL+DLGVK  +VDK+GAW+S+ G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFKEANFQIMYGRGISKEGELVDLGVKHKLVDKAGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
            N+  FL+EN  IAE IES LR+        LL +PA   K++A  DD  +
Sbjct: 302 ANAMKFLQENSSIAEEIESKLRE-------LLLVKPAKKDKNEAAADDGKD 345


>gi|25991751|gb|AAN76916.1| RecA [Burkholderia cenocepacia]
          Length = 333

 Score =  381 bits (978), Expect = e-104,   Method: Composition-based stats.
 Identities = 228/325 (70%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|108759616|ref|YP_629645.1| recA protein [Myxococcus xanthus DK 1622]
 gi|108463496|gb|ABF88681.1| recA protein [Myxococcus xanthus DK 1622]
          Length = 363

 Score =  381 bits (978), Expect = e-104,   Method: Composition-based stats.
 Identities = 212/348 (60%), Positives = 280/348 (80%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +K KA+E A+S ++R +GKG+IM+LG+   +   ++ + +GS+ LDIALG+GG PKGR
Sbjct: 4   NQEKEKAIELAMSAVERQFGKGSIMRLGNDEPMMRDVQAIPTGSISLDIALGVGGVPKGR 63

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EI+GPESSGKTTL LH +A++QK GG C +VDAEHALD  YARKLGV   +LL+SQPD
Sbjct: 64  IIEIFGPESSGKTTLCLHIVAEAQKRGGICGYVDAEHALDVGYARKLGVRTDDLLLSQPD 123

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI +MLVRSGA+D++V+DSVAAL P+AE+EG+MG++  G+QARLMSQALRKLT 
Sbjct: 124 TGEQALEIAEMLVRSGAIDVLVVDSVAALVPKAELEGEMGDAHMGVQARLMSQALRKLTG 183

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++S+  ++FINQ+RMKIGVMFG+PETTTGGNALKFY+S RLDIRR+G+IK+ D++ G+
Sbjct: 184 TIAKSQTCVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIGAIKNGDNVVGS 243

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFK+VEFDIMYG GIS  G+LIDL    +IV+KSG+WFSF G+R+GQ
Sbjct: 244 RTRVKVVKNKVAPPFKEVEFDIMYGTGISREGDLIDLASNENIVEKSGSWFSFNGERIGQ 303

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           GREN K +LRE+ EIA++IE  + +  G+         A +    A+ 
Sbjct: 304 GRENVKEYLREHPEIAKDIEGRVLEKYGIGKSGAPVAAAPDESAPAEG 351


>gi|254489873|ref|ZP_05103068.1| protein RecA [Methylophaga thiooxidans DMS010]
 gi|224464958|gb|EEF81212.1| protein RecA [Methylophaga thiooxydans DMS010]
          Length = 347

 Score =  381 bits (978), Expect = e-104,   Method: Composition-based stats.
 Identities = 232/345 (67%), Positives = 286/345 (82%), Gaps = 2/345 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKGA+M++G  G+    I  VS+GS+GLD+ALGIGG P+GR++
Sbjct: 4   NKKKALGAALGQIEKQFGKGAVMRMGDAGAAR-DIAAVSTGSIGLDVALGIGGLPRGRVI 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GGT AFVDAEHALD +YA KLGVD+ +LL+SQPDTG
Sbjct: 63  EIYGPESSGKTTLTLHAIAEMQKMGGTAAFVDAEHALDPVYAEKLGVDIDDLLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSGAVDI+V+DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT++I
Sbjct: 123 EQALEITDMLVRSGAVDIVVVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK  D I GN+T
Sbjct: 183 KRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKKGDEILGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQVEFDI+YGEGIS  GELIDLGV  ++V+KSGAW+S+ G R+GQG+
Sbjct: 243 RVKVVKNKVAPPFKQVEFDILYGEGISREGELIDLGVSQNLVEKSGAWYSYNGTRIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           +N + FLREN E+A  IE+ +R+   L       +     ++D +
Sbjct: 303 DNVRAFLRENTEMAAEIEAKIREAM-LPKKVKPADTQPPVENDVE 346


>gi|25229187|gb|AAN74663.1| RecA [Burkholderia pyrrocinia]
          Length = 333

 Score =  381 bits (978), Expect = e-104,   Method: Composition-based stats.
 Identities = 227/325 (69%), Positives = 284/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|25991713|gb|AAN76897.1| RecA [Burkholderia cepacia]
 gi|25991737|gb|AAN76909.1| RecA [Burkholderia cepacia]
 gi|25991759|gb|AAN76920.1| RecA [Burkholderia cepacia]
          Length = 333

 Score =  381 bits (978), Expect = e-104,   Method: Composition-based stats.
 Identities = 228/325 (70%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|207366350|emb|CAQ58070.1| recombinase A [Agrobacterium tumefaciens]
          Length = 316

 Score =  381 bits (978), Expect = e-104,   Method: Composition-based stats.
 Identities = 250/315 (79%), Positives = 288/315 (91%), Gaps = 1/315 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRIVEIY
Sbjct: 1   KALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRIVEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGEQA
Sbjct: 60  GPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 LEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 179

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
           KC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQTRVK
Sbjct: 180 KCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQTRVK 239

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQGREN+
Sbjct: 240 VVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGRENA 299

Query: 314 KIFLRENIEIAENIE 328
           K FLR+N E A  IE
Sbjct: 300 KTFLRDNPETANEIE 314


>gi|256832273|ref|YP_003161000.1| recA protein [Jonesia denitrificans DSM 20603]
 gi|256685804|gb|ACV08697.1| recA protein [Jonesia denitrificans DSM 20603]
          Length = 364

 Score =  381 bits (978), Expect = e-104,   Method: Composition-based stats.
 Identities = 209/330 (63%), Positives = 265/330 (80%), Gaps = 2/330 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+ KALEAAL QI R +GKG+IM+LG        ++++ +GS+ LD+ALGIGG P+GR
Sbjct: 4   TPDREKALEAALGQIDRQFGKGSIMRLGDDNR--PKVDIIPTGSIALDVALGIGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVE+YGPESSGKTT+ALH +A +QK GG  AF+DAEHALD +YA+KLGVD   LL+SQPD
Sbjct: 62  IVEVYGPESSGKTTVALHAVANAQKNGGIAAFIDAEHALDPVYAQKLGVDTDALLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITDML+RSGA+D+IV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T 
Sbjct: 122 TGEQALEITDMLIRSGAIDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           ++S +    +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+DIRR+ ++K+     GN
Sbjct: 182 ALSTTGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRMDIRRIETLKEGSEPVGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNKMA PFKQ EFDI+YG GIS  G LID+GV   IV KSG+WF+++G +LGQ
Sbjct: 242 RTRVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDMGVDNGIVRKSGSWFTYEGDQLGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLV 338
           G+EN++ FLR+N E+A  IE  +    G++
Sbjct: 302 GKENARKFLRDNPELAAEIERRIMVKLGII 331


>gi|220912231|ref|YP_002487540.1| recombinase A [Arthrobacter chlorophenolicus A6]
 gi|254790420|sp|B8HG89|RECA_ARTCA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|219859109|gb|ACL39451.1| recA protein [Arthrobacter chlorophenolicus A6]
          Length = 352

 Score =  381 bits (978), Expect = e-104,   Method: Composition-based stats.
 Identities = 205/343 (59%), Positives = 269/343 (78%), Gaps = 2/343 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D++KALEAAL+QI + +GKG++M+LG +  +   IEV+ +GS+ LD+ALGIGG P+GR+
Sbjct: 5   PDRAKALEAALAQIDKQFGKGSVMRLGDE--VRAPIEVIPTGSIALDVALGIGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD   LL+SQPDT
Sbjct: 63  IEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPDYAAKLGVDTDALLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLV SG++DI+VIDSVAAL PRAEIEGDMG+S  G+QARLMSQALRK+T  
Sbjct: 123 GEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKITGR 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+     GN+
Sbjct: 183 LSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIQTLKEGADSVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           T+ K+VKNKMA PFK  EFDI+YG+GIS  G +ID+GV+  I+ KSG+WF++ G +LGQG
Sbjct: 243 TKAKIVKNKMAPPFKIAEFDIIYGQGISREGGIIDMGVEHGIIKKSGSWFTYDGDQLGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
            ENS+ FLR+N E+A  +E L+++  G+       E   ++  
Sbjct: 303 MENSRRFLRDNPELAAELERLIKEKLGVGVKPADAESKEDSPK 345


>gi|54633820|gb|AAV36020.1| RecA [Burkholderia sp. KBC-4]
          Length = 333

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 227/325 (69%), Positives = 282/325 (86%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+V 
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVT 324


>gi|25991731|gb|AAN76906.1| RecA [Burkholderia cepacia]
          Length = 333

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 227/325 (69%), Positives = 284/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|25991743|gb|AAN76912.1| RecA [Burkholderia cepacia]
          Length = 333

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 226/325 (69%), Positives = 281/325 (86%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GDATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IV DSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVNDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+V 
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVT 324


>gi|152980318|ref|YP_001354551.1| recombinase A [Janthinobacterium sp. Marseille]
 gi|166220652|sp|A6T204|RECA_JANMA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|151280395|gb|ABR88805.1| RecA recombination protein [Janthinobacterium sp. Marseille]
          Length = 367

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 231/363 (63%), Positives = 295/363 (81%), Gaps = 1/363 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD +K     DKSKAL AAL+QI++ +GKG++M++   G++ E ++VVS+GSLGLDIALG
Sbjct: 1   MDDKKNAPSSDKSKALAAALAQIEKQFGKGSVMRM-EDGAVVEEVQVVSTGSLGLDIALG 59

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG P+GR+VEIYGPESSGKTTL L TIA+ QK GGTCAF+DAEHALD  YA+KLG++L 
Sbjct: 60  VGGLPRGRVVEIYGPESSGKTTLTLQTIAEMQKLGGTCAFIDAEHALDVTYAQKLGINLS 119

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +LLISQPDTGEQALEI D LVRSG VD+IVIDSVAALTPRAEIEGDMG+SLPG+QARLMS
Sbjct: 120 DLLISQPDTGEQALEICDALVRSGGVDLIVIDSVAALTPRAEIEGDMGDSLPGLQARLMS 179

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT SI+R+  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK
Sbjct: 180 QALRKLTGSINRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIK 239

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             D + GN+T+VKVVKNK+A PFK+  FDI+YGEG S  GE++DLG  A IV+KSGAW+S
Sbjct: 240 SGDEVIGNETKVKVVKNKIAPPFKEAHFDILYGEGTSREGEILDLGSDAKIVEKSGAWYS 299

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           + G+R+GQG++N++ +L+E  ++A  IE+ +R + G+     ++      K  + K+  +
Sbjct: 300 YNGERIGQGKDNARNYLKERPDLAREIENKVRVSLGVPELGAIKSDEPVAKKASAKESKE 359

Query: 361 NVE 363
             E
Sbjct: 360 AKE 362


>gi|284097292|ref|ZP_06385430.1| recombinase A [Candidatus Poribacteria sp. WGA-A3]
 gi|283831198|gb|EFC35170.1| recombinase A [Candidatus Poribacteria sp. WGA-A3]
          Length = 349

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 218/338 (64%), Positives = 278/338 (82%), Gaps = 1/338 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KALE A++QI++ +GKG+IM+LG+ G + + ++  S+GSL LD+ALG+GG P+GR+VEI+
Sbjct: 2   KALELAVTQIEKQFGKGSIMKLGT-GDVSDDVQATSTGSLALDLALGVGGLPRGRVVEIF 60

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTL LH IA++QKTGG+ AF+DAEHALD  YA+KLGV + +LL++QPDTGEQA
Sbjct: 61  GPESSGKTTLCLHAIAEAQKTGGSAAFIDAEHALDVSYAKKLGVKIDDLLVAQPDTGEQA 120

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI + LVRSGA+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT +IS+S
Sbjct: 121 LEIAETLVRSGAIDLVVVDSVAALVPRAEIEGEMGDSHMGLQARLMSQALRKLTGAISKS 180

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
              +VFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+ SIKD   + G++ RVK
Sbjct: 181 LTTVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIESIKDGQEVIGSRVRVK 240

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VVKNK A PF+Q EFDIM+ EG+S  GELIDLGV+  I+DK+GAW+S++ +RLGQGRE  
Sbjct: 241 VVKNKTAPPFRQAEFDIMFAEGVSKVGELIDLGVEKKIIDKAGAWYSYREERLGQGREAV 300

Query: 314 KIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           K FL+EN E A+ IE+ +R+ AGL+A       A    
Sbjct: 301 KAFLKENPETAKEIETKIREQAGLLATPKAAGSAEAEP 338


>gi|239628382|ref|ZP_04671413.1| recA protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518528|gb|EEQ58394.1| recA protein [Clostridiales bacterium 1_7_47FAA]
          Length = 389

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 205/336 (61%), Positives = 273/336 (81%), Gaps = 1/336 (0%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
            ++MN  +K KAL+AAL+QI++ YGKG++M+LG   +    IE V +GS+ LDIALG+GG
Sbjct: 11  NRDMNKDEKLKALDAALTQIEKAYGKGSVMKLGDSRANMN-IETVPTGSISLDIALGLGG 69

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            PKGRI+E+YGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YA+ +GVD+ NL 
Sbjct: 70  VPKGRIIEVYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLY 129

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           ISQPD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+G+MG+S  G+QARLMSQAL
Sbjct: 130 ISQPDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGEMGDSHVGLQARLMSQAL 189

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT+ IS+S CI++FINQ+R K+GVMFG+PETTTGG ALKFY+SVRLD+RR+ ++K   
Sbjct: 190 RKLTAVISKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYASVRLDVRRIETLKQGG 249

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+ RVKVVKNK+A PFK+ EFDIM+G+GIS  G+++DL VK +I++KSGAWF++ G
Sbjct: 250 EVIGNRVRVKVVKNKIAPPFKEAEFDIMFGKGISKVGDILDLAVKENIIEKSGAWFAYNG 309

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
            ++GQGRENSK +L +N E+   +E+ +R    L  
Sbjct: 310 SKIGQGRENSKQYLSDNPEMCAEVEAKVRARYELPG 345


>gi|242133650|gb|ACS87936.1| RecA [Burkholderia cepacia]
          Length = 333

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 226/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ Q+ GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQRIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|70904894|gb|AAZ14025.1| RecA [Burkholderia cenocepacia]
          Length = 332

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+V+
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVS 324


>gi|224551681|gb|ACN54240.1| RecA [Burkholderia sp. LWAT21]
          Length = 325

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 228/325 (70%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|212726671|gb|AAM50050.2| recombinase A [Zymomonas mobilis subsp. mobilis]
          Length = 354

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 241/337 (71%), Positives = 290/337 (86%), Gaps = 2/337 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N +DK KALEAAL+QI R +GKG++M+LGS+  I   I+ +SSGSLGLDIALGIGG P+G
Sbjct: 14  NNMDKQKALEAALAQIDRAFGKGSVMRLGSREKI--EIDTISSGSLGLDIALGIGGLPRG 71

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+KLGV+  +L++SQP
Sbjct: 72  RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFVDAEHALDPVYAKKLGVNTDDLIVSQP 131

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEITD L+RS AVDI+V+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T
Sbjct: 132 DTGEQALEITDTLIRSNAVDILVVDSVAALTPRAEIEGEMGDSHVGLQARLMSQALRKIT 191

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            SI+RS+ +++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRRVG IKD+D I G
Sbjct: 192 GSINRSQTLVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRVGQIKDRDEIVG 251

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N TRVKVVKNK+A  FKQVEFDIMYGEG+S  GE++DLGVKA I+DKSG+WFS    R+G
Sbjct: 252 NATRVKVVKNKLAPRFKQVEFDIMYGEGVSKMGEILDLGVKAGIIDKSGSWFSHDSVRIG 311

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
           QGREN+K FLRE+ E+ E IE ++R N   +AD +L 
Sbjct: 312 QGRENAKTFLREHPEMTEKIEKMIRHNTAEIADEMLD 348


>gi|224551679|gb|ACN54239.1| RecA [Burkholderia sp. LWAT18]
          Length = 334

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 228/325 (70%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|25229183|gb|AAN74661.1| RecA [Burkholderia dolosa]
 gi|25991707|gb|AAN76894.1| RecA [Burkholderia dolosa]
 gi|25991709|gb|AAN76895.1| RecA [Burkholderia dolosa]
 gi|34223993|gb|AAQ63160.1| RecA [Burkholderia dolosa]
 gi|56849543|gb|AAW31631.1| RecA [Burkholderia dolosa]
          Length = 333

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+ A
Sbjct: 300 EFLRENPEIAREIENRIRESLGVAA 324


>gi|323489614|ref|ZP_08094841.1| recombinase A [Planococcus donghaensis MPA1U2]
 gi|323396745|gb|EGA89564.1| recombinase A [Planococcus donghaensis MPA1U2]
          Length = 353

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 203/355 (57%), Positives = 271/355 (76%), Gaps = 4/355 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG++M+LG        I  VSSGSL LD ALGIGG+P+GR
Sbjct: 1   MSDRKAALDMALKQIEKQFGKGSVMKLGENSD--RNISSVSSGSLALDTALGIGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++E+YGPESSGKTT++LH IA+ Q TGGT AF+DAEHALD +YA+ LGV++  LL+SQPD
Sbjct: 59  VIEVYGPESSGKTTVSLHAIAEVQATGGTAAFIDAEHALDPVYAKNLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDI+V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            I++S  I++FINQ+R KIGVMFG+PETT GG ALKFYSSVRL++RR  ++K    I GN
Sbjct: 179 VINKSNTIVIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKSGTEIIGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++K+VKNK+A PF+  E DIMYG+GIS  GE++D+G    I+ KSG+W+S+  +R+GQ
Sbjct: 239 RTKIKIVKNKVAPPFRTAEVDIMYGKGISREGEIVDIGSDLEIIQKSGSWYSYNEERIGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD--KDDTDN 361
           GREN K FL +N EI   I + +R++ G+ A +     +    +D +   D+ DN
Sbjct: 299 GRENVKQFLLKNPEIRNEISNKIRESYGMAAATYTIAASKEEPEDFNLLLDEDDN 353


>gi|25991721|gb|AAN76901.1| RecA [Burkholderia cenocepacia]
          Length = 333

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 228/325 (70%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+V+
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVS 324


>gi|25991683|gb|AAN76882.1| RecA [Burkholderia cepacia]
          Length = 334

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 228/325 (70%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|25991679|gb|AAN76880.1| RecA [Burkholderia cepacia]
 gi|25991765|gb|AAN76923.1| RecA [Burkholderia cepacia]
          Length = 334

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 227/325 (69%), Positives = 282/325 (86%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+ A
Sbjct: 300 EFLRENPEIAREIENRIRESLGVAA 324


>gi|66270756|gb|AAY43691.1| RecA/GFP fusion protein [Cloning vector pSJS1472]
          Length = 593

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 213/348 (61%), Positives = 284/348 (81%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD++NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIENLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            N+  +L++N E A+ IE  +R+      +S       +++  A+ ++
Sbjct: 304 ANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVAETNE 351


>gi|304316844|ref|YP_003851989.1| recA protein [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778346|gb|ADL68905.1| recA protein [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 343

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 210/349 (60%), Positives = 281/349 (80%), Gaps = 6/349 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           +++K KAL+ A+SQI+R +GKG+IM+LG    +   +EV+S+GS+ LDIALG+GG P+GR
Sbjct: 1   MIEKQKALDMAISQIERQFGKGSIMRLGDNSKL--NVEVISTGSIDLDIALGVGGVPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EI+GPESSGKTT+ALH +A++QK GGT AF+DAEHALD  YA+ +GV++ NLL+SQPD
Sbjct: 59  IIEIFGPESSGKTTIALHILAEAQKLGGTGAFIDAEHALDPAYAKNVGVNIDNLLVSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGA+D+IVIDSVAAL P+AEI+GDMG++  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIVEALVRSGAIDVIVIDSVAALVPKAEIDGDMGDAHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            IS++K + VFINQ+R K+GVMFG+PETT GG ALKFYS++RLD+R+V +IK  + + GN
Sbjct: 179 IISKTKSVAVFINQLREKVGVMFGNPETTPGGRALKFYSTIRLDVRKVDAIKQGNDVVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++DL     I+DKSGAW+S+   RLGQ
Sbjct: 239 RTRVKVVKNKVAPPFKQAEFDIMYGEGISREGSILDLAASIDIIDKSGAWYSYGDIRLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           GREN+K +L++N  IA+ IE+ +R+N  L    L+      + D+ +++
Sbjct: 299 GRENAKQYLKDNKSIADEIENKIRENFNL----LVTTKKSVSDDEIEQE 343


>gi|320534660|ref|ZP_08035104.1| protein RecA [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133135|gb|EFW25639.1| protein RecA [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 412

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 205/329 (62%), Positives = 263/329 (79%), Gaps = 2/329 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+SKAL  AL+QI + +GKG++M+LG        + V+ +GS+ LD+ALG+GG P+GR
Sbjct: 7   TQDRSKALATALAQIDKSFGKGSVMRLGDDTR--PPVSVIPTGSVALDVALGVGGLPRGR 64

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD +YA+ LGVD+ NLL+SQPD
Sbjct: 65  IIEVYGPESSGKTTVALHAVASAQRAGGNAAFIDAEHALDPVYAKALGVDIDNLLVSQPD 124

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITDMLVRSG +DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T 
Sbjct: 125 TGEQALEITDMLVRSGGLDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITG 184

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           ++S +    +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLD+RR+G +KD D   GN
Sbjct: 185 ALSSTGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDVRRIGGLKDGDQPVGN 244

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNKMA PFKQ EFDI+YG+GIS  G L+DLGV   +V KSGAWF++   +LGQ
Sbjct: 245 RTRVKVVKNKMAPPFKQAEFDILYGQGISREGSLLDLGVDNGVVRKSGAWFTYGEDQLGQ 304

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGL 337
           G+EN++ FL++N ++A  IE  +    G+
Sbjct: 305 GKENARNFLKDNPQLAAEIEEKILAALGI 333


>gi|261407902|ref|YP_003244143.1| recA protein [Paenibacillus sp. Y412MC10]
 gi|261284365|gb|ACX66336.1| recA protein [Paenibacillus sp. Y412MC10]
          Length = 353

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 220/339 (64%), Positives = 272/339 (80%), Gaps = 4/339 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  ALE AL QI++ +GKG+IM+LG    +   +E+V SGSL LDIALG GG P+GR
Sbjct: 1   MSDRRAALEMALRQIEKQFGKGSIMKLGESTHM--QVEIVPSGSLALDIALGTGGLPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD  YA KLGV++  LL+SQPD
Sbjct: 59  IIEVYGPESSGKTTVALHAIAEVQKAGGQAAFIDAEHALDPSYANKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVD+IVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDVIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRLD+RR+ SIK  + + GN
Sbjct: 179 AINKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRIESIKMGNDVVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TR+KVVKNK+A PFKQ E DIMYGEGIS  G LID+G +  IVDKSGAW+S+ G RLGQ
Sbjct: 239 RTRIKVVKNKVAPPFKQAELDIMYGEGISREGSLIDIGTELDIVDKSGAWYSYAGDRLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           GREN+K FL+EN EIA  IE+ +R+ + L     + EP+
Sbjct: 299 GRENAKQFLKENPEIASVIENKIREASNLTT--AVPEPS 335


>gi|89902707|ref|YP_525178.1| recombination protein RecA [Rhodoferax ferrireducens T118]
 gi|89347444|gb|ABD71647.1| recA protein [Rhodoferax ferrireducens T118]
          Length = 384

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 226/340 (66%), Positives = 288/340 (84%), Gaps = 1/340 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +K+KAL+ AL+QI++ +GKG IM+LG  G + E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 36  NSEKAKALQVALAQIEKQFGKGTIMRLGE-GEVIEDIQVVSTGSLGLDIALGVGGLPRGR 94

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QKTGG CAF+DAEHALD  YA+ LGV+L++LLISQPD
Sbjct: 95  VVEIYGPESSGKTTLTLQVIAEMQKTGGQCAFIDAEHALDIQYAQNLGVNLQDLLISQPD 154

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI D LVRSGAVD+IV+DSVAALTP+AE+EG+MG+SLPG+QARLMSQALRKLT+
Sbjct: 155 TGEQALEIVDSLVRSGAVDLIVVDSVAALTPKAELEGEMGDSLPGLQARLMSQALRKLTA 214

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK  D   GN
Sbjct: 215 HIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGDVAIGN 274

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T+VKVVKNK+A PFK  EFDI++GEGIS  GE+ID+GV A+I+DKSGAW+++ G+++GQ
Sbjct: 275 ETKVKVVKNKVAPPFKTAEFDILFGEGISRQGEIIDMGVNANILDKSGAWYAYNGEKIGQ 334

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348
           GR+N++ FLREN  +++ IE+ +R + G+       EP +
Sbjct: 335 GRDNARDFLRENPALSQEIENKVRASLGIPLLPGAPEPDV 374


>gi|256825586|ref|YP_003149546.1| RecA protein [Kytococcus sedentarius DSM 20547]
 gi|256688979|gb|ACV06781.1| RecA protein [Kytococcus sedentarius DSM 20547]
          Length = 367

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 196/352 (55%), Positives = 273/352 (77%), Gaps = 3/352 (0%)

Query: 1   MDYRKEMN-IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIAL 59
           M  +   +   +++++L+A +SQI++ +GKGA+M+LG        I  + +GS+ LD+AL
Sbjct: 1   MAGKNNADPNAERTRSLDAVMSQIEKQHGKGAVMRLGDDTR--PPIATIPTGSIALDVAL 58

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           G+GG P+GR++E+YGPESSGKTT+ALH +A +QK GG  AF+DAEHALD  YA+KLGVD+
Sbjct: 59  GLGGLPRGRVIEVYGPESSGKTTVALHAVANAQKAGGIAAFIDAEHALDPEYAKKLGVDV 118

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
            NLL+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLM
Sbjct: 119 DNLLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLM 178

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           SQALRK+T ++S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++
Sbjct: 179 SQALRKITGALSNTGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRIDVRRIETL 238

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           KD     GN+TR K+VKNK++ PFKQ EFDI+YG+GIS  G +ID+GV+   + KSGAW+
Sbjct: 239 KDGTDAVGNRTRAKIVKNKVSPPFKQAEFDILYGQGISREGGIIDMGVEHGFIRKSGAWY 298

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           +++G +LGQG+EN++ FL++N ++ E ++  ++   G+  D       ++ +
Sbjct: 299 TYEGDQLGQGKENARQFLKDNPDLTEELDRKIKAKLGIGVDPNAPVDDVDAE 350


>gi|70904892|gb|AAZ14024.1| RecA [Burkholderia cenocepacia]
          Length = 330

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+V+
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVS 324


>gi|95928608|ref|ZP_01311355.1| recA protein [Desulfuromonas acetoxidans DSM 684]
 gi|95135398|gb|EAT17050.1| recA protein [Desulfuromonas acetoxidans DSM 684]
          Length = 340

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 218/344 (63%), Positives = 281/344 (81%), Gaps = 4/344 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   ++ +A++ A+ QI++ +GKG+IM+LG   ++   I  +S+GS+GLDIALGIGG P+
Sbjct: 1   MATDNRKQAIDLAMGQIEKQFGKGSIMRLGED-NVMRDISTISTGSIGLDIALGIGGVPR 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E+YGPESSGKTTLALH +A++QK GG  AFVDAEHALD  YARKLGV+  +LL+SQ
Sbjct: 60  GRIIEVYGPESSGKTTLALHIVAEAQKKGGIAAFVDAEHALDITYARKLGVNADDLLVSQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI ++LVRSGA+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL
Sbjct: 120 PDTGEQALEIVEVLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSHMGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T++IS+S C ++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVR+DIR++ ++K    + 
Sbjct: 180 TATISKSNCCVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRMDIRKIATLKQGQDVI 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G++TRVKVVKNK A PFK+ EFDIMYGEGIS  GEL+DLGV   IV+KSGAWFS+  +R+
Sbjct: 240 GSRTRVKVVKNKTAPPFKEAEFDIMYGEGISKVGELVDLGVANDIVNKSGAWFSYGDERI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           GQGRENSK +L++N E+A  IE  + +  GL +   + EPA   
Sbjct: 300 GQGRENSKQYLKDNAEVASEIEQQILELYGLSS---IDEPAAEE 340


>gi|25991753|gb|AAN76917.1| RecA [Burkholderia cepacia]
          Length = 333

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GDATEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|332037713|gb|EGI74164.1| protein RecA [Pseudoalteromonas haloplanktis ANT/505]
          Length = 347

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 231/347 (66%), Positives = 283/347 (81%), Gaps = 2/347 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +K KAL+AALSQI+R +GKG+IM+LG   ++   IE VS+GSLG+DIALGIGG P GR
Sbjct: 2   NDNKQKALDAALSQIERQFGKGSIMKLGDNKAL--NIESVSTGSLGIDIALGIGGLPMGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVE+YGPESSGKTTL L  IA++QK G TCAF+DAEHALD +YA+KLGV++ +L +SQPD
Sbjct: 60  IVEVYGPESSGKTTLTLQVIAEAQKEGKTCAFIDAEHALDPVYAQKLGVNIDDLFVSQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DMLVRS AVD+++IDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT 
Sbjct: 120 TGEQALEICDMLVRSSAVDVVIIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I RS  + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIRR+GS+K+ D + GN
Sbjct: 180 NIKRSNTLCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRIDIRRIGSVKEGDEVVGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVK+VKNK+A PFKQ EF IMYGEGIS  GELIDLGVK  IV+K+GAW+S+ G ++GQ
Sbjct: 240 ETRVKIVKNKVAPPFKQAEFIIMYGEGISKQGELIDLGVKHKIVEKAGAWYSYSGNKVGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           G+ NS  FL+EN EIA+ IE  LR+   L A    ++      DD D
Sbjct: 300 GKSNSIKFLKENPEIADEIEGKLREMLLLKATIEPEDGEDKLGDDPD 346


>gi|25991763|gb|AAN76922.1| RecA [Burkholderia cepacia]
          Length = 334

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 227/325 (69%), Positives = 282/325 (86%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+V 
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVT 324


>gi|25991735|gb|AAN76908.1| RecA [Burkholderia cepacia]
          Length = 333

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 226/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QA LMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQALLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|25991673|gb|AAN76877.1| RecA [Burkholderia multivorans]
 gi|25991675|gb|AAN76878.1| RecA [Burkholderia multivorans]
 gi|25991677|gb|AAN76879.1| RecA [Burkholderia multivorans]
          Length = 334

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+ A
Sbjct: 300 EFLRENPEIAREIENRIRESLGVAA 324


>gi|227875221|ref|ZP_03993363.1| recombination protein A [Mobiluncus mulieris ATCC 35243]
 gi|269978112|ref|ZP_06185062.1| protein RecA [Mobiluncus mulieris 28-1]
 gi|306818483|ref|ZP_07452206.1| recombination protein A [Mobiluncus mulieris ATCC 35239]
 gi|307700702|ref|ZP_07637727.1| RecA protein [Mobiluncus mulieris FB024-16]
 gi|227844126|gb|EEJ54293.1| recombination protein A [Mobiluncus mulieris ATCC 35243]
 gi|269933621|gb|EEZ90205.1| protein RecA [Mobiluncus mulieris 28-1]
 gi|304648656|gb|EFM45958.1| recombination protein A [Mobiluncus mulieris ATCC 35239]
 gi|307613697|gb|EFN92941.1| RecA protein [Mobiluncus mulieris FB024-16]
          Length = 372

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 212/345 (61%), Positives = 270/345 (78%), Gaps = 1/345 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D++KALE AL QI + +GKG++M+LG   +  + I V+ +GS+ LD+ALGIGG P+
Sbjct: 1   MAKDDRAKALETALGQIDKQFGKGSVMRLGDNAA-GKDIAVIPTGSVALDVALGIGGLPR 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYGPESSGKTT+ALH +A +QK GG  AF+DAEHALD +YA+KLGVD+ NLL+SQ
Sbjct: 60  GRIVEIYGPESSGKTTVALHAVANAQKAGGNAAFIDAEHALDPVYAQKLGVDIDNLLVSQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI DML+RSG +DIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRK+
Sbjct: 120 PDTGEQALEIADMLIRSGGLDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKI 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T ++S +    +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  
Sbjct: 180 TGALSATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETMKDGTNPI 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR K+VKNKMA PF+Q EFDIMYGEGIS  G LIDLGV   IV KSG+WF++   +L
Sbjct: 240 GNRTRAKIVKNKMAPPFRQAEFDIMYGEGISREGGLIDLGVDCDIVTKSGSWFTYGEIQL 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           GQG+EN++ FLR+N E+A  +E+ +    G+  D      +I  +
Sbjct: 300 GQGKENARKFLRDNPELAAELENKILIKMGVRPDPEAASESIEVE 344


>gi|150390420|ref|YP_001320469.1| recA protein [Alkaliphilus metalliredigens QYMF]
 gi|149950282|gb|ABR48810.1| recA protein [Alkaliphilus metalliredigens QYMF]
          Length = 347

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 213/348 (61%), Positives = 278/348 (79%), Gaps = 2/348 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           ++K KAL+ A+SQI++ +GKG+IM+LG    +   +E +S+GS+ LD+A+GIGG P+GR+
Sbjct: 1   MEKKKALDVAISQIEKQFGKGSIMKLGEDSKL--SLECISTGSIDLDVAIGIGGVPRGRV 58

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT++LH IA++QK GG+ AF+DAEHALD IYARKLGVD +NL++SQPDT
Sbjct: 59  VEIYGPESSGKTTVSLHIIAEAQKNGGSAAFIDAEHALDPIYARKLGVDTENLIVSQPDT 118

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + LVRSGA+D+IV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ S
Sbjct: 119 GEQALEIAEALVRSGAIDVIVVDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLSGS 178

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I++S    +FINQ+R KIGVMFG+PETTTGG ALKFY+SVRLD+RR+  IK  + I GN+
Sbjct: 179 INKSNTTAIFINQLREKIGVMFGNPETTTGGRALKFYASVRLDVRRIDVIKQGNDIIGNR 238

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQ EFDIMYGEGIS  G+++D+     I+ K+GAW+S+   RLGQG
Sbjct: 239 TRVKVVKNKIAPPFKQAEFDIMYGEGISKTGDVLDVASNLEIIKKAGAWYSYGDHRLGQG 298

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           RENSK FL+EN +I   +E+ +R++  L   S         K+ A+K+
Sbjct: 299 RENSKQFLKENPDIFLEVENKIREHHNLPLVSRPVVVQSPQKEVAEKE 346


>gi|313837169|gb|EFS74883.1| protein RecA [Propionibacterium acnes HL037PA2]
 gi|314927809|gb|EFS91640.1| protein RecA [Propionibacterium acnes HL044PA1]
 gi|314971942|gb|EFT16040.1| protein RecA [Propionibacterium acnes HL037PA3]
 gi|328907273|gb|EGG27039.1| RecA protein [Propionibacterium sp. P08]
          Length = 348

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 208/344 (60%), Positives = 267/344 (77%), Gaps = 2/344 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+ KAL  AL QI++ +GKG+IM+LG Q ++   I  + +GS+ LD+ALG+GG P+GR
Sbjct: 4   TADREKALATALQQIEKQHGKGSIMRLGEQETV--KIAAIPTGSVALDVALGVGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEIYGPESSGKTT+ALH IA +Q  GG CAF+DAEHALD  YARKLGVD  +LL+SQPD
Sbjct: 62  IVEIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPEYARKLGVDTDSLLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GEQALEI D LVRSGA+++IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T 
Sbjct: 122 NGEQALEIADTLVRSGALELIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +++ +    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD   + GN
Sbjct: 182 ALNAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRIETLKDGSEMVGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFKQ EFDI+YG+GIS  G LID+GV   ++ KSG+WFS+  ++LGQ
Sbjct: 242 RTRVKVVKNKVAPPFKQAEFDILYGQGISREGSLIDMGVDCGLITKSGSWFSYNNEQLGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           G+EN + FL+ N +IA  IE  +  + GL    + +     T +
Sbjct: 302 GKENVRNFLKGNPDIANEIEDKILTHLGLREAEVPEGVDPQTGE 345


>gi|126726569|ref|ZP_01742410.1| recombinase A [Rhodobacterales bacterium HTCC2150]
 gi|126704432|gb|EBA03524.1| recombinase A [Rhodobacterales bacterium HTCC2150]
          Length = 358

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 236/358 (65%), Positives = 291/358 (81%), Gaps = 10/358 (2%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           +    +K KAL++ALSQI+R +GKG+IM+LG  G+  E I   S+GSLGLDIALGIGG P
Sbjct: 10  KKPDANKLKALDSALSQIERQFGKGSIMKLGQDGATQE-ISATSTGSLGLDIALGIGGLP 68

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR++EIYGPESSGKTTL LH+IA+ QK GG CAFVDAEHALD +YA+KLGV+L  LLIS
Sbjct: 69  KGRVIEIYGPESSGKTTLTLHSIAEEQKLGGVCAFVDAEHALDPLYAKKLGVNLDELLIS 128

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEIT+ LVRSGAV+++V+DSVAALTP+AE+EGDMG+   G QARLMSQA+RK
Sbjct: 129 QPDTGEQALEITETLVRSGAVNMVVVDSVAALTPKAELEGDMGDRQVGAQARLMSQAMRK 188

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT +I++S C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIKD+D +
Sbjct: 189 LTGAINKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIKDRDEV 248

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN TRVKVVKNK+A PFKQVEFDI+YGEGIS  GE+IDLGV A +++KSG+W+S+  +R
Sbjct: 249 VGNTTRVKVVKNKVAPPFKQVEFDIIYGEGISKMGEIIDLGVAAGLIEKSGSWYSYGDER 308

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           +GQGREN K FL+EN ++A  +E  +R + GL  D           +    DD D +E
Sbjct: 309 IGQGRENVKKFLKENDKVALELEDKIRASHGLDFDG---------SESKGSDDGDLLE 357


>gi|116670021|ref|YP_830954.1| recombinase A [Arthrobacter sp. FB24]
 gi|166199596|sp|A0JUY4|RECA_ARTS2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|116610130|gb|ABK02854.1| recA protein [Arthrobacter sp. FB24]
          Length = 351

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 203/342 (59%), Positives = 268/342 (78%), Gaps = 2/342 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KAL+AAL+QI + +GKG++M+LG +  +   IEV+ +GS+ LD+ALGIGG P+GR+
Sbjct: 5   PDRQKALDAALAQIDKQFGKGSVMRLGDE--VRAPIEVIPTGSIALDVALGIGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD   LL+SQPDT
Sbjct: 63  VEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHALDPEYAAKLGVDTDALLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+ SG++D+IVIDSVAAL PRAEIEGDMG+S  G+QARLMSQALRK+T  
Sbjct: 123 GEQALEIMDMLIGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKITGR 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ ++K+     GN+
Sbjct: 183 LSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQTLKEGADSVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           T+ K+VKNKMA PFK  EFDI+YG+GIS  G +ID+GV+  ++ KSG+WF++ G +LGQG
Sbjct: 243 TKAKIVKNKMAPPFKIAEFDIIYGQGISREGGIIDMGVEHGLIKKSGSWFTYDGDQLGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
            ENS+ FLR+N E+A  +E L+++  G+       E   + K
Sbjct: 303 MENSRRFLRDNPELAAELERLIKEKLGVGVKPAEAEKEASPK 344


>gi|255281677|ref|ZP_05346232.1| protein RecA [Bryantella formatexigens DSM 14469]
 gi|255267744|gb|EET60949.1| protein RecA [Bryantella formatexigens DSM 14469]
          Length = 387

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 211/350 (60%), Positives = 276/350 (78%), Gaps = 4/350 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K KAL+AALSQI++ +GKG++M+LG  G     +E V +GSL LDIALG+GG PK
Sbjct: 1   MIKEEKMKALDAALSQIEKQFGKGSVMKLGDSGKNLN-VETVPTGSLSLDIALGLGGIPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YA ++GVD+ NL ISQ
Sbjct: 60  GRIVEIYGPESSGKTTVALHMVAEVQKRGGVAGFIDAEHALDPVYASRIGVDIDNLYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQA+EIT+ LVRSGAVDII++DSVAAL P+AEI+GDMG+S  G+QARLMSQALRKL
Sbjct: 120 PDNGEQAMEITETLVRSGAVDIIIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+ IS+S CI++FINQ+R KIGVMFG+PETTTGG ALKFYSS+RLD+R+  ++K    + 
Sbjct: 180 TAVISKSNCIVIFINQLREKIGVMFGNPETTTGGRALKFYSSIRLDVRKGEALKQAGEVI 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN TR+KVVKNK+A PFK+ EFDIM+G+GIS  G++IDL     +++KSGAW+++   ++
Sbjct: 240 GNHTRIKVVKNKIAPPFKEAEFDIMFGQGISREGDIIDLAANIGVINKSGAWYAYNDAKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           GQGREN+K +LREN  I + +E+ +R++ GL  D    +P+     DA +
Sbjct: 300 GQGRENAKAYLRENPAIMDEVEAKVREHYGLPVDK---KPSEEKPADAAE 346


>gi|116333847|ref|YP_795374.1| recombinase A [Lactobacillus brevis ATCC 367]
 gi|122269466|sp|Q03R29|RECA_LACBA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|116099194|gb|ABJ64343.1| RecA protein [Lactobacillus brevis ATCC 367]
          Length = 377

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 198/347 (57%), Positives = 269/347 (77%), Gaps = 2/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++  AL+ AL +I++ +GKG+IM+LG   ++   +E V SGSL LD+ALG+GG+P+GRIV
Sbjct: 4   ERQAALDKALKKIEKDFGKGSIMRLGDNSNL--EVETVPSGSLALDVALGVGGYPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  YA  LGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPAYATALGVNIDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 122 EQGLQIADALISSGAIDIVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY++VRL++RR   IKD   + GN+T
Sbjct: 182 NKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQIKDGTDVIGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PFK+ E DIMYG+GIS  GEL+D+ V+  IVDKSG+W+S+   R+GQGR
Sbjct: 242 RIKVVKNKVAPPFKRAEVDIMYGQGISQTGELLDMAVEKDIVDKSGSWYSYGEDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           EN+K +L ++ ++   +   +R   G+  +      A  TK DA KD
Sbjct: 302 ENAKQYLADHPDMMAEVNQRVRAAYGVGDEEAAATKATETKTDAPKD 348


>gi|25991711|gb|AAN76896.1| RecA [Burkholderia cepacia]
          Length = 333

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEATEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|25991729|gb|AAN76905.1| RecA [Burkholderia cenocepacia]
          Length = 333

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+V+
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVS 324


>gi|242133652|gb|ACS87937.1| RecA [Burkholderia cepacia]
 gi|242133654|gb|ACS87938.1| RecA [Burkholderia cepacia]
          Length = 333

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|153839205|ref|ZP_01991872.1| protein RecA [Vibrio parahaemolyticus AQ3810]
 gi|149747270|gb|EDM58256.1| protein RecA [Vibrio parahaemolyticus AQ3810]
          Length = 354

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 212/357 (59%), Positives = 286/357 (80%), Gaps = 4/357 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M+  +++   +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG
Sbjct: 1   MNKSEKVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALG 58

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ 
Sbjct: 59  AGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDID 118

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++S
Sbjct: 119 ALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLS 178

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK
Sbjct: 179 QAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIK 238

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           + D + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+K+GAW+S
Sbjct: 239 EGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYS 298

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           + G ++GQG+ N+  +LRE+ EIA+ I++ LR+   L++ +  + PA   K + +++
Sbjct: 299 YNGDKIGQGKANACNYLREHPEIAKTIDTKLREM--LLSPAQPEAPAAGEKPEQEEE 353


>gi|256371456|ref|YP_003109280.1| recA protein [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008040|gb|ACU53607.1| recA protein [Acidimicrobium ferrooxidans DSM 10331]
          Length = 346

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 197/348 (56%), Positives = 270/348 (77%), Gaps = 2/348 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +D+ KALE A++QI++ +GKG+IM++G    +   IE + +G++ LD+ALG+GG P+GRI
Sbjct: 1   MDRDKALETAIAQIEKQFGKGSIMRMGEHPEM--AIESIPTGAMALDLALGVGGLPRGRI 58

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGK+TLALH +A++Q+ GG CA++DAEHALD +YA+ +GVD+  LLISQPD 
Sbjct: 59  VEIYGPESSGKSTLALHVVAEAQRQGGRCAYIDAEHALDPVYAQAIGVDVDQLLISQPDY 118

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D+L+RSG++D++++DSVAALTP+AEIEGD+G+S  G+QARLMSQALRKLT++
Sbjct: 119 GEQALEIADLLIRSGSIDVVIVDSVAALTPKAEIEGDIGDSHVGLQARLMSQALRKLTAN 178

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +S++  + VFINQ+R KIGVM+GSPE T GG ALKFYSSVRLDIRRV SIKD   I G++
Sbjct: 179 LSKTNTLAVFINQLREKIGVMYGSPEVTPGGRALKFYSSVRLDIRRVESIKDGAEIVGSR 238

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            RVKVVKNK A PF+Q EFDI YG+GIS  G L+D+ V+  +V K+GAW+++ G++LGQG
Sbjct: 239 ARVKVVKNKCAPPFRQAEFDIAYGKGISREGSLLDVAVEMGLVKKAGAWYTYDGEQLGQG 298

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           REN K FL  N ++   ++  +R+   +     L    +   +   +D
Sbjct: 299 RENVKAFLAANPQLMAELDVKVRERVAVDRGVALTHGIVAEAEAIIED 346


>gi|329922220|ref|ZP_08277937.1| RecA protein [Paenibacillus sp. HGF5]
 gi|328942333|gb|EGG38602.1| RecA protein [Paenibacillus sp. HGF5]
          Length = 356

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 220/339 (64%), Positives = 272/339 (80%), Gaps = 4/339 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  ALE AL QI++ +GKG+IM+LG    +   +E+V SGSL LDIALG GG P+GR
Sbjct: 4   LSDRRAALEMALRQIEKQFGKGSIMKLGESTHM--QVEIVPSGSLALDIALGTGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD  YA KLGV++  LL+SQPD
Sbjct: 62  IIEVYGPESSGKTTVALHAIAEVQKAGGQAAFIDAEHALDPSYANKLGVNIDELLLSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVD+IVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 122 TGEQALEIAEALVRSGAVDVIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRLD+RR+ SIK  + + GN
Sbjct: 182 AINKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRIESIKMGNDVVGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TR+KVVKNK+A PFKQ E DIMYGEGIS  G LID+G +  IVDKSGAW+S+ G RLGQ
Sbjct: 242 RTRIKVVKNKVAPPFKQAELDIMYGEGISREGSLIDIGTELDIVDKSGAWYSYAGDRLGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           GREN+K FL+EN EIA  IE+ +R+ + L     + EP+
Sbjct: 302 GRENAKQFLKENPEIASVIENKIREASNLTT--AVPEPS 338


>gi|25991689|gb|AAN76885.1| RecA [Burkholderia cepacia]
 gi|204342697|gb|ACI01436.1| RecA [Burkholderia sp. MS14]
          Length = 334

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 227/325 (69%), Positives = 282/325 (86%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+V 
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVT 324


>gi|239933503|ref|ZP_04690456.1| recombinase A [Streptomyces ghanaensis ATCC 14672]
 gi|291441874|ref|ZP_06581264.1| RecA [Streptomyces ghanaensis ATCC 14672]
 gi|291344769|gb|EFE71725.1| RecA [Streptomyces ghanaensis ATCC 14672]
          Length = 343

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 200/341 (58%), Positives = 265/341 (77%), Gaps = 2/341 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ +ALE AL QI++ +GKG++M LG     +  IEV+ +GS+ LD+ALGIGG P+
Sbjct: 1   MKEQDRERALELALIQIEKRFGKGSVMCLGDDP--WSSIEVIPTGSIALDVALGIGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYGPE+SGKTTLALH +A +Q+ GGT AF+DAE+ LD+ YA++LGVD+  LL+ Q
Sbjct: 59  GRIVEIYGPEASGKTTLALHAVANAQRAGGTVAFIDAEYGLDTEYAKRLGVDVDALLVCQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQAL+I D L+RS A+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDNGEQALQIADTLIRSAALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
            S++ +S   ++FINQ+R KIGVMFGSPETT GG ALKFY+SVRLD+RR+ ++K+     
Sbjct: 179 ASALGQSGTTMIFINQLREKIGVMFGSPETTPGGRALKFYASVRLDVRRIETLKNGTEAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKV KNK A PFKQ EFDI+YGEGIS  G LIDLG++   + KSGAW++++G RL
Sbjct: 239 GNRTRVKVAKNKCAPPFKQAEFDILYGEGISREGGLIDLGMEHGFLYKSGAWYAYEGDRL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           GQG+EN++ F ++N ++A+ IE  +++  G+ A       A
Sbjct: 299 GQGKENARNFFKDNPDLADEIEKKIKEKLGIGAGPDTAPAA 339


>gi|88855434|ref|ZP_01130098.1| recombination repairing protein [marine actinobacterium PHSC20C1]
 gi|88815341|gb|EAR25199.1| recombination repairing protein [marine actinobacterium PHSC20C1]
          Length = 386

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 212/334 (63%), Positives = 262/334 (78%), Gaps = 2/334 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +  D+ K+LE AL+QI R +GKG++M+LGS       +EV+ +GS+ LD+ALGIGG P+G
Sbjct: 3   SAADREKSLETALAQIDRQFGKGSVMRLGSDERA--PVEVIPTGSIALDVALGIGGLPRG 60

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTL LH IA +Q+ GG  AF+DAEHALD  YA KLGVD+  LL+SQP
Sbjct: 61  RIVEIYGPESSGKTTLTLHAIANAQRNGGIAAFIDAEHALDPEYAAKLGVDIDALLVSQP 120

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI DMLVRSG++D+IVIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKLT
Sbjct: 121 DTGEQALEIADMLVRSGSIDLIVIDSVAALVPRAEIEGEMGDTHVGLQARLMSQALRKLT 180

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
             +S++   ++FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     G
Sbjct: 181 GGLSQTNTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVG 240

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+TRVKVVKNKMA PFKQ EFDI+YG GIS  G LID GV   IV KSGAW+++ G +LG
Sbjct: 241 NRTRVKVVKNKMAPPFKQAEFDILYGIGISREGSLIDFGVDHEIVRKSGAWYTYDGDQLG 300

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           QG+E S+ FL +N  IA  IE  + +  G+ A++
Sbjct: 301 QGKEKSRAFLIQNPAIALEIEQKIMRKLGVGAEA 334


>gi|25991757|gb|AAN76919.1| RecA [Burkholderia cenocepacia]
          Length = 333

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+V+
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVS 324


>gi|25991761|gb|AAN76921.1| RecA [Burkholderia cepacia]
 gi|25991767|gb|AAN76924.1| RecA [Burkholderia cepacia]
          Length = 334

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 227/325 (69%), Positives = 282/325 (86%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+ A
Sbjct: 300 EFLRENPEIAREIENRIRESLGVAA 324


>gi|325962845|ref|YP_004240751.1| protein RecA [Arthrobacter phenanthrenivorans Sphe3]
 gi|164606908|emb|CAP64295.1| recombinase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468932|gb|ADX72617.1| protein RecA [Arthrobacter phenanthrenivorans Sphe3]
          Length = 351

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 206/342 (60%), Positives = 269/342 (78%), Gaps = 2/342 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D++KALEAAL+QI + +GKG++M+LG +  +   IEV+ +GS+ LD+ALGIGG P+GR+
Sbjct: 5   PDRAKALEAALAQIDKQFGKGSVMRLGDE--VRAPIEVIPTGSIALDVALGIGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD   LL+SQPDT
Sbjct: 63  VEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHALDPEYAAKLGVDTDALLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLV SG++D+IVIDSVAAL PRAEIEGDMG+S  G+QARLMSQALRK+T  
Sbjct: 123 GEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKITGR 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ ++K+     GN+
Sbjct: 183 LSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQTLKEGADSVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           T+ K+VKNKMA PFK  EFDI+YG+GIS  G +ID+GV+  I+ KSG+WF++ G +LGQG
Sbjct: 243 TKAKIVKNKMAPPFKVAEFDIIYGQGISREGGIIDMGVEHGIIKKSGSWFTYDGDQLGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
            ENS+ FLR+N E+A  +E L+++  G+       E   + K
Sbjct: 303 MENSRRFLRDNPELAAELERLIKEKLGVGVKPAEAESKDSPK 344


>gi|25991701|gb|AAN76891.1| RecA [Burkholderia cepacia]
          Length = 333

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 227/325 (69%), Positives = 282/325 (86%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+ A
Sbjct: 300 EFLRENPEIAREIENRIRESLGVAA 324


>gi|25991693|gb|AAN76887.1| RecA [Burkholderia cenocepacia]
 gi|25991697|gb|AAN76889.1| RecA [Burkholderia cenocepacia]
 gi|25991699|gb|AAN76890.1| RecA [Burkholderia cenocepacia]
 gi|25991741|gb|AAN76911.1| RecA [Burkholderia cenocepacia]
          Length = 333

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+V+
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVS 324


>gi|251797369|ref|YP_003012100.1| recA protein [Paenibacillus sp. JDR-2]
 gi|247544995|gb|ACT02014.1| recA protein [Paenibacillus sp. JDR-2]
          Length = 351

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 216/333 (64%), Positives = 268/333 (80%), Gaps = 2/333 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  ALE AL QI++ +GKG+IM+LG    +   +E V SGS+ LDIALGIGG P+GR
Sbjct: 1   MSDRRAALEMALRQIEKQFGKGSIMKLGESTHM--QVETVPSGSIALDIALGIGGLPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E YGPESSGKTT+ALH IA+ Q+ GG  AF+DAEHALD +YA KLGV++  LL+SQPD
Sbjct: 59  IIECYGPESSGKTTVALHAIAEVQRIGGQAAFIDAEHALDPLYASKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL  
Sbjct: 119 TGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLGG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +IS+SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR+ +IK  + + GN
Sbjct: 179 AISKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLEVRRIETIKQGNDMVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TR+KVVKNK+A PFKQ E DIMYGEGIS  G L+D+GV+  IV KSGAWFS+ G RLGQ
Sbjct: 239 RTRIKVVKNKVAPPFKQAEIDIMYGEGISREGSLVDIGVEMDIVQKSGAWFSYNGDRLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           GREN+K FL+++ E+A  IE  +R+ + L A +
Sbjct: 299 GRENAKQFLKDHPEVAAVIEKQIREQSNLSASA 331


>gi|308068729|ref|YP_003870334.1| RecA protein (Recombinase A) [Paenibacillus polymyxa E681]
 gi|305858008|gb|ADM69796.1| RecA protein (Recombinase A) [Paenibacillus polymyxa E681]
          Length = 359

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 213/340 (62%), Positives = 269/340 (79%), Gaps = 2/340 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG    +   +E + SGS+ LDIALG GGFP+GR
Sbjct: 7   LSDRRAALDMALRQIEKQFGKGSIMKLGESTHM--QVETIPSGSIALDIALGTGGFPRGR 64

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EIYGPESSGKTT+ALH IA+ QKTGG  AF+DAEHALD  YA KLGV++  LL+SQPD
Sbjct: 65  VIEIYGPESSGKTTVALHAIAEVQKTGGQAAFIDAEHALDPSYASKLGVNIDELLLSQPD 124

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDI+V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ 
Sbjct: 125 TGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSG 184

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRLD+RR+ S+K  + I GN
Sbjct: 185 AINKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRIESLKMGNDIVGN 244

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TR+KVVKNK+A PF+Q E DIMYGEGIS  G LID+G +  IVDKSGAW+S++G+RLGQ
Sbjct: 245 RTRIKVVKNKVAPPFRQAEVDIMYGEGISKEGSLIDIGTEHDIVDKSGAWYSYEGERLGQ 304

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348
           GREN+K FL+EN  IA  IE  +R  + L+          
Sbjct: 305 GRENAKQFLKENPNIASTIEQKIRVASNLITTVAPPTEEE 344


>gi|260907234|ref|ZP_05915556.1| recA protein [Brevibacterium linens BL2]
          Length = 370

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 218/356 (61%), Positives = 276/356 (77%), Gaps = 5/356 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKSKAL+AAL QI R YGKGAIM+LG    + E I  + +GS+ LDIALGIGG P+GR+V
Sbjct: 15  DKSKALDAALGQIDRNYGKGAIMRLGE--GVREPIACIPTGSIALDIALGIGGLPRGRVV 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +QKTGG  AF+DAEHALD  YA+KLGVD   LL+SQPDTG
Sbjct: 73  EIYGPESSGKTTVALHAVANAQKTGGIAAFIDAEHALDPEYAKKLGVDTDQLLVSQPDTG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+  ++
Sbjct: 133 EQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKIAGAL 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+SK   +FINQ+R K+GV FGSPETT+GG ALKFY+SVR+D+RR+ ++K+     GN+T
Sbjct: 193 SQSKTTAIFINQLREKVGVFFGSPETTSGGKALKFYASVRIDVRRIETLKEGQDAVGNRT 252

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R K+VKNK+A PFKQ EFDI+YG+GIS  G LID+GV   I+ KSG+WF++ G +LGQG+
Sbjct: 253 RAKIVKNKIAPPFKQAEFDIIYGQGISREGSLIDMGVDNGIIRKSGSWFTYDGDQLGQGK 312

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA-DSLLQEPAINTKD--DADKDDTDNVE 363
           EN + FLR+N  +AE IE  ++   GL+  D    +   N  D   A+   +D+VE
Sbjct: 313 ENVRNFLRDNPGLAEEIELKIKHKMGLIKVDEPEADADANQADGASAESSKSDDVE 368


>gi|254519170|ref|ZP_05131226.1| recombinase A [Clostridium sp. 7_2_43FAA]
 gi|226912919|gb|EEH98120.1| recombinase A [Clostridium sp. 7_2_43FAA]
          Length = 346

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 215/328 (65%), Positives = 270/328 (82%), Gaps = 2/328 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK KA+E A+ QI++ +GKG+IM+LG   ++   IE +S+G L LDIALG+GG PKGRI
Sbjct: 6   MDKLKAIENAMGQIEKQFGKGSIMKLGENSAL--NIETISTGCLDLDIALGVGGLPKGRI 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH  A++QK GG  AF+DAEHALD  YAR+LGVD +NL++SQPDT
Sbjct: 64  IEIYGPESSGKTTVALHVAAEAQKLGGAVAFIDAEHALDPSYARRLGVDTENLIVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQ LEI + LVRSGA+D+IV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT +
Sbjct: 124 GEQGLEIAEALVRSGAIDVIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGT 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I ++ CI +FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+RR+ SIK  +S+ GN+
Sbjct: 184 IQKTGCIAIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRRIDSIKQGESVVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKV+KNK+A PFKQ EFDIMY EGIS  G ++D+GVK  +V KSGAWFS+   RLGQG
Sbjct: 244 TRVKVIKNKVAPPFKQAEFDIMYNEGISRTGNIVDVGVKEGMVQKSGAWFSYGDVRLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           REN+K +L++N EIA  IE+ +R+   L
Sbjct: 304 RENAKQYLKDNPEIALEIENKIREKYEL 331


>gi|70904911|gb|AAZ14033.1| RecA [Burkholderia ambifaria]
          Length = 328

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 225/324 (69%), Positives = 282/324 (87%), Gaps = 1/324 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGP
Sbjct: 1   LAAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALE
Sbjct: 60  ESSGKTTLTLQVVAKLQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           ITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C
Sbjct: 120 ITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNC 179

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVV
Sbjct: 180 LVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVV 239

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ 
Sbjct: 240 KNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNARE 299

Query: 316 FLRENIEIAENIESLLRQNAGLVA 339
           FLREN EIA  IE+ +R++ G+V 
Sbjct: 300 FLRENPEIAREIENRIRESLGVVT 323


>gi|283798535|ref|ZP_06347688.1| protein RecA [Clostridium sp. M62/1]
 gi|291073798|gb|EFE11162.1| protein RecA [Clostridium sp. M62/1]
 gi|295090129|emb|CBK76236.1| protein RecA [Clostridium cf. saccharolyticum K10]
 gi|295115571|emb|CBL36418.1| protein RecA [butyrate-producing bacterium SM4/1]
          Length = 365

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 206/352 (58%), Positives = 279/352 (79%), Gaps = 1/352 (0%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
            + M+  +K KAL+AAL+QI++ YGKG++M+LG  G+    IE V +GSL LDIALG+GG
Sbjct: 2   EENMDRDEKLKALDAALTQIEKAYGKGSVMKLGDSGANMN-IETVPTGSLSLDIALGLGG 60

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P+GRI+E+YGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YA+ +GVD+ NL 
Sbjct: 61  VPRGRIIEVYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLY 120

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           ISQPD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+G+MG+S  G+QARLMSQAL
Sbjct: 121 ISQPDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGEMGDSHVGLQARLMSQAL 180

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT+ IS+S CI++FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+D+RR+ ++K   
Sbjct: 181 RKLTAIISKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYASVRMDVRRIETLKQGG 240

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+ R+KVVKNK+A PFK+ EFDIM+G+GIS  G+++DL  K +IV+KSGAW+++ G
Sbjct: 241 EMVGNRVRIKVVKNKIAPPFKEAEFDIMFGKGISKEGDILDLAAKENIVEKSGAWYAYNG 300

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            ++GQGREN+K FL+ N E+ + IE+ +R   GL   +  +  A    D  +
Sbjct: 301 SKIGQGRENAKNFLQANQELCQEIEAKVRAKYGLDGAAADEGSAEREADAQE 352


>gi|25991667|gb|AAN76874.1| RecA [Burkholderia cepacia]
          Length = 334

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 228/325 (70%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|153810464|ref|ZP_01963132.1| hypothetical protein RUMOBE_00845 [Ruminococcus obeum ATCC 29174]
 gi|149833643|gb|EDM88724.1| hypothetical protein RUMOBE_00845 [Ruminococcus obeum ATCC 29174]
          Length = 351

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 213/352 (60%), Positives = 275/352 (78%), Gaps = 1/352 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K KALEAAL  I++ YGKG++M+LG   S    +E V +GSLGLDIALG+GG PK
Sbjct: 1   MINEEKQKALEAALGHIEKQYGKGSVMKLGDSSSNMV-VEAVPTGSLGLDIALGVGGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YA+ +GVD+ NL ISQ
Sbjct: 60  GRIVEIYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEIEGDMG+S  G+ ARLMSQALRKL
Sbjct: 120 PDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIEGDMGDSHVGLHARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T++ISRS C+++FINQ+R K+GVMFG+PETTTGG ALKFY+SVRLD+RR  ++K    + 
Sbjct: 180 TAAISRSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASVRLDVRRTETLKQGGEMV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN  +VKVVKNK+A PFKQ EFDIM+G GIS  GE++DL  + ++V+KSGAW+S+ G+R+
Sbjct: 240 GNHVKVKVVKNKVAPPFKQAEFDIMFGTGISREGEILDLASECNVVNKSGAWYSYNGERI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           GQGREN KIFL+++ EI E IE  +R    L+ +    +     +D  ++ +
Sbjct: 300 GQGRENVKIFLKDHPEICEEIEKQVRIQYHLLPEEEAAQQNPAAQDAEEEQE 351


>gi|329947478|ref|ZP_08294680.1| RecA protein [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328524757|gb|EGF51812.1| RecA protein [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 413

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 205/329 (62%), Positives = 263/329 (79%), Gaps = 2/329 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+SKAL  AL+QI + +GKG++M+LG        + V+ +GS+ LD+ALG+GG P+GR
Sbjct: 7   TQDRSKALATALAQIDKSFGKGSVMRLGDDTR--PPVSVIPTGSVALDVALGVGGLPRGR 64

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD +YA+ LGVD+ NLL+SQPD
Sbjct: 65  IIEVYGPESSGKTTVALHAVASAQRAGGNAAFIDAEHALDPVYAKALGVDIDNLLVSQPD 124

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITDMLVRSG +DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T 
Sbjct: 125 TGEQALEITDMLVRSGGLDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITG 184

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           ++S +    +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLD+RR+G +KD D   GN
Sbjct: 185 ALSSTGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDVRRIGGLKDGDQPVGN 244

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNKMA PFKQ EFDI+YG+GIS  G L+DLGV   +V KSGAWF++   +LGQ
Sbjct: 245 RTRVKVVKNKMAPPFKQAEFDILYGQGISREGSLLDLGVDNGVVRKSGAWFTYGEDQLGQ 304

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGL 337
           G+EN++ FL++N ++A  IE  +    G+
Sbjct: 305 GKENARNFLKDNPQLAAEIEEKILAALGI 333


>gi|323705381|ref|ZP_08116956.1| recA protein [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535283|gb|EGB25059.1| recA protein [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 343

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 214/349 (61%), Positives = 279/349 (79%), Gaps = 6/349 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           +++K KAL+ A+SQI+R +GKG+IM+LG    +   I+V+S+GS+ LDIALG+GG P+GR
Sbjct: 1   MIEKQKALDMAISQIERQFGKGSIMRLGDNSKL--NIDVISTGSIDLDIALGVGGVPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EI+GPESSGKTT+ALH +A++QK GGT AF+DAEHALD +YA+ +GV + NLL+SQPD
Sbjct: 59  IIEIFGPESSGKTTIALHILAEAQKLGGTGAFIDAEHALDPVYAKNVGVKIDNLLVSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVD+IVIDSVAAL P+AEI+GDMG++  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIVEALVRSGAVDVIVIDSVAALVPKAEIDGDMGDAHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            IS++K + VFINQ+R K+GVMFG+PETT GG ALKFYS++RLD+R+V  IK  + I GN
Sbjct: 179 VISKTKSVAVFINQLREKVGVMFGNPETTPGGRALKFYSTIRLDVRKVDGIKQGNDIVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++DL     I+DKSGAW+S+   RLGQ
Sbjct: 239 RTRVKVVKNKVAPPFKQAEFDIMYGEGISREGSILDLAASIDIIDKSGAWYSYGDIRLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           GREN+K +L+EN  IA+ IE+ +R+N  L    L+        D+ ++D
Sbjct: 299 GRENAKQYLKENKAIADEIENKIRENFNL----LVTTKKSIIDDEVEQD 343


>gi|25991665|gb|AAN76873.1| RecA [Burkholderia cepacia]
 gi|25991671|gb|AAN76876.1| RecA [Burkholderia cepacia]
 gi|25991687|gb|AAN76884.1| RecA [Burkholderia cepacia]
 gi|25991769|gb|AAN76925.1| RecA [Burkholderia cepacia]
          Length = 334

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 228/325 (70%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|25991727|gb|AAN76904.1| RecA [Burkholderia cenocepacia]
          Length = 333

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 227/325 (69%), Positives = 282/325 (86%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+V 
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVT 324


>gi|119961491|ref|YP_947360.1| recombinase A [Arthrobacter aurescens TC1]
 gi|166199595|sp|A1R548|RECA_ARTAT RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|119948350|gb|ABM07261.1| recA protein [Arthrobacter aurescens TC1]
          Length = 347

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 208/345 (60%), Positives = 269/345 (77%), Gaps = 3/345 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+ KALEAAL+QI + +GKG+IM+LG        IEV+ +GS+ LD+ALGIGG P+GR
Sbjct: 4   TPDREKALEAALAQIDKQFGKGSIMRLGDDTRA--PIEVIPTGSIALDVALGIGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD   LL+SQPD
Sbjct: 62  VVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPDYAAKLGVDTDALLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DMLV SG++DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T 
Sbjct: 122 TGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+     GN
Sbjct: 182 RLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIQTLKEGADSVGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T+ K+VKNKMA PFK  EFDI+YG+GIS  G +ID+GV+  I+ KSG+WF++ G +LGQ
Sbjct: 242 RTKAKIVKNKMAPPFKIAEFDIIYGQGISREGGIIDMGVEHGIIKKSGSWFTYDGDQLGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGL-VADSLLQEPAINTKD 352
           G ENS+ FLR+N E+A+ +E L+++  G+ V  +    P +   D
Sbjct: 302 GMENSRRFLRDNPELAQELERLIKEKLGVGVVKTEEDSPKLKAVD 346


>gi|326773688|ref|ZP_08232971.1| recA protein [Actinomyces viscosus C505]
 gi|326636918|gb|EGE37821.1| recA protein [Actinomyces viscosus C505]
          Length = 413

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 206/329 (62%), Positives = 264/329 (80%), Gaps = 2/329 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+SKAL  AL+QI + +GKG++M+LG +      + V+ +GS+ LD+ALG+GG P+GR
Sbjct: 7   TQDRSKALATALAQIDKSFGKGSVMRLGDESR--PPVSVIPTGSVALDVALGVGGLPRGR 64

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVE+YGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD +YA+ LGVD+ NLL+SQPD
Sbjct: 65  IVEVYGPESSGKTTVALHAVASAQRAGGNAAFIDAEHALDPVYAKALGVDIDNLLVSQPD 124

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITDMLVRSG +DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T 
Sbjct: 125 TGEQALEITDMLVRSGGLDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITG 184

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           ++S +    +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLD+RR+G +KD D   GN
Sbjct: 185 ALSSTGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDVRRIGGLKDGDQPVGN 244

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNKMA PFKQ EFDI+YG+GIS  G L+DLGV   +V KSGAWF++   +LGQ
Sbjct: 245 RTRVKVVKNKMAPPFKQAEFDILYGQGISREGSLLDLGVDNGVVRKSGAWFTYGEDQLGQ 304

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGL 337
           G+EN++ FL++N ++A  IE  +    G+
Sbjct: 305 GKENARNFLKDNPQLAAEIEEKILAALGI 333


>gi|221133348|ref|ZP_03559653.1| recA protein [Glaciecola sp. HTCC2999]
          Length = 344

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 222/329 (67%), Positives = 274/329 (83%), Gaps = 2/329 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K++AL AAL QI++ +GKGAIM+LG   ++   IE VS+GSL +DIALGIGG P 
Sbjct: 1   MAEDNKTRALSAALGQIEKQFGKGAIMRLGDNQAM--DIESVSTGSLSIDIALGIGGLPC 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD +YA  LGV++  LL+SQ
Sbjct: 59  GRVVEIYGPESSGKTTLTLQVIAEAQKVGKTCAFVDAEHALDPVYAEALGVNIDELLVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI DMLVRSGAVD++++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKL
Sbjct: 119 PDTGEQALEICDMLVRSGAVDVVIVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T +I RS  +++FINQ+R+KIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IKD D I 
Sbjct: 179 TGNIKRSNTLVIFINQIRLKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKDGDEIV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EF IMYG+GIS   ELIDLGVK  +V+K+GAW+S+ G+R+
Sbjct: 239 GNETRVKVVKNKVAPPFKQAEFQIMYGQGISKEAELIDLGVKQKLVEKAGAWYSYNGERI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNA 335
           GQG+ N   +L+E+ E+A +IE+ +R   
Sbjct: 299 GQGKANVVKYLKEHPEMANDIEARIRAEL 327


>gi|295810384|emb|CBL81076.1| recombinase A [Agrobacterium larrymoorei]
          Length = 316

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 250/317 (78%), Positives = 290/317 (91%), Gaps = 1/317 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVIE-VETVSTGSLSLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +SK +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQTR
Sbjct: 180 KSKTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQTR 239

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQGRE
Sbjct: 240 VKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGRE 299

Query: 312 NSKIFLRENIEIAENIE 328
           N+K F+R+N  +A  IE
Sbjct: 300 NAKGFVRDNPAVANEIE 316


>gi|292491237|ref|YP_003526676.1| recA protein [Nitrosococcus halophilus Nc4]
 gi|291579832|gb|ADE14289.1| recA protein [Nitrosococcus halophilus Nc4]
          Length = 342

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 221/325 (68%), Positives = 281/325 (86%), Gaps = 1/325 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL AALSQI++ +GKGA+M+LG   ++  G+EV+S+GSLGLDIALG+GG P+GR+V
Sbjct: 4   NRKKALGAALSQIEKQFGKGAVMRLGDANTVR-GVEVISTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPE+SGKTTLAL  +A++QK GGT AFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 63  EIFGPEASGKTTLALQVVAEAQKVGGTAAFVDAEHALDPQYAEKLGVNVDDLLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGAVD++VIDSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 123 EQALEIADMLVRSGAVDVVVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRRVGS+K  + I GN+T
Sbjct: 183 KRSNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGSLKKGEEIVGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFKQ+ FDI+YG G+S  GE+IDLGV+  +V K+GAW+S+ G R+GQGR
Sbjct: 243 RVKIVKNKVAPPFKQISFDILYGSGVSREGEIIDLGVQEGLVQKTGAWYSYNGDRIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
           +N + FL+E+ E+A+ IE+ +R+  
Sbjct: 303 DNVRQFLKEHQELAQGIEASIREKL 327


>gi|325068442|ref|ZP_08127115.1| recA protein [Actinomyces oris K20]
          Length = 413

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 206/329 (62%), Positives = 264/329 (80%), Gaps = 2/329 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+SKAL  AL+QI + +GKG++M+LG +      + V+ +GS+ LD+ALG+GG P+GR
Sbjct: 7   TQDRSKALATALAQIDKSFGKGSVMRLGDESR--PPVSVIPTGSVALDVALGVGGLPRGR 64

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVE+YGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD +YA+ LGVD+ NLL+SQPD
Sbjct: 65  IVEVYGPESSGKTTVALHAVASAQRAGGNAAFIDAEHALDPVYAKALGVDIDNLLVSQPD 124

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITDMLVRSG +DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T 
Sbjct: 125 TGEQALEITDMLVRSGGLDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITG 184

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           ++S +    +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLD+RR+G +KD D   GN
Sbjct: 185 ALSSTGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDVRRIGGLKDGDQPVGN 244

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNKMA PFKQ EFDI+YG+GIS  G L+DLGV   +V KSGAWF++   +LGQ
Sbjct: 245 RTRVKVVKNKMAPPFKQAEFDILYGQGISREGSLLDLGVDNGVVRKSGAWFTYGEDQLGQ 304

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGL 337
           G+EN++ FL++N ++A  IE  +    G+
Sbjct: 305 GKENARNFLKDNPQLAAEIEEKILAALGI 333


>gi|315127429|ref|YP_004069432.1| RecA protein (recombinase A) [Pseudoalteromonas sp. SM9913]
 gi|315015943|gb|ADT69281.1| RecA protein (recombinase A) [Pseudoalteromonas sp. SM9913]
          Length = 347

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 230/347 (66%), Positives = 283/347 (81%), Gaps = 2/347 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +K KAL+AALSQI+R +GKG+IM+LG   ++   I+ VS+GSLG+DIALGIGG P GR
Sbjct: 2   NDNKQKALDAALSQIERQFGKGSIMKLGDNKAL--NIDAVSTGSLGIDIALGIGGLPMGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVE+YGPESSGKTTL L  IA++QK G TCAFVDAEHALD IYA+KLGV++  LL+SQPD
Sbjct: 60  IVEVYGPESSGKTTLTLQVIAEAQKEGKTCAFVDAEHALDPIYAQKLGVNIDELLVSQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DMLVRS AVD++++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT 
Sbjct: 120 TGEQALEICDMLVRSSAVDVVIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I RS  + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIRR+GS+K+ D + GN
Sbjct: 180 NIKRSNTLCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRIDIRRIGSVKEGDEVVGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVK+VKNK+A PFKQ EF IMYGEGIS  GELIDLGVK  +V+K+GAW+S+ G ++GQ
Sbjct: 240 ETRVKIVKNKVAPPFKQAEFIIMYGEGISKQGELIDLGVKHKLVEKAGAWYSYNGNKVGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           G+ NS  FL+EN EIA+ IE  LR+   L A    ++      D+ D
Sbjct: 300 GKSNSIKFLKENPEIADEIEGKLREMLLLKATVEPEDGEDVLGDEGD 346


>gi|282854040|ref|ZP_06263377.1| RecA protein [Propionibacterium acnes J139]
 gi|50082583|gb|AAT69989.1| RecA [Propionibacterium acnes]
 gi|50082585|gb|AAT69990.1| RecA [Propionibacterium acnes]
 gi|50082591|gb|AAT69993.1| RecA [Propionibacterium acnes]
 gi|50082597|gb|AAT69996.1| RecA [Propionibacterium acnes]
 gi|50082599|gb|AAT69997.1| RecA [Propionibacterium acnes]
 gi|50082601|gb|AAT69998.1| RecA [Propionibacterium acnes]
 gi|50082603|gb|AAT69999.1| RecA [Propionibacterium acnes]
 gi|50082607|gb|AAT70001.1| RecA [Propionibacterium acnes]
 gi|50082635|gb|AAT70015.1| RecA [Propionibacterium acnes]
 gi|50082637|gb|AAT70016.1| RecA [Propionibacterium acnes]
 gi|50082639|gb|AAT70017.1| RecA [Propionibacterium acnes]
 gi|50082643|gb|AAT70019.1| RecA [Propionibacterium acnes]
 gi|50082645|gb|AAT70020.1| RecA [Propionibacterium acnes]
 gi|50082647|gb|AAT70021.1| RecA [Propionibacterium acnes]
 gi|50082649|gb|AAT70022.1| RecA [Propionibacterium acnes]
 gi|50082651|gb|AAT70023.1| RecA [Propionibacterium acnes]
 gi|68137189|gb|AAY85535.1| RecA [Propionibacterium acnes]
 gi|91177071|gb|ABE26890.1| putative immunogenic protein antigen 84 [Propionibacterium acnes]
 gi|110348488|gb|ABG72898.1| RecA [Propionibacterium acnes]
 gi|110348492|gb|ABG72900.1| RecA [Propionibacterium acnes]
 gi|282583493|gb|EFB88873.1| RecA protein [Propionibacterium acnes J139]
 gi|314923007|gb|EFS86838.1| protein RecA [Propionibacterium acnes HL001PA1]
 gi|314966783|gb|EFT10882.1| protein RecA [Propionibacterium acnes HL082PA2]
 gi|314981118|gb|EFT25212.1| protein RecA [Propionibacterium acnes HL110PA3]
 gi|315091944|gb|EFT63920.1| protein RecA [Propionibacterium acnes HL110PA4]
 gi|315093300|gb|EFT65276.1| protein RecA [Propionibacterium acnes HL060PA1]
 gi|315103445|gb|EFT75421.1| protein RecA [Propionibacterium acnes HL050PA2]
 gi|327327609|gb|EGE69385.1| protein RecA [Propionibacterium acnes HL103PA1]
          Length = 348

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 207/344 (60%), Positives = 266/344 (77%), Gaps = 2/344 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+ KAL  AL QI++ +GKG+IM+LG Q ++   I  + +GS+ LD+ALG+GG P+GR
Sbjct: 4   TADREKALATALQQIEKQHGKGSIMRLGEQETV--KIAAIPTGSVALDVALGVGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEIYGPESSGKTT+ALH IA +Q  GG CAF+DAEHALD  YARKLGVD  +LL+SQPD
Sbjct: 62  IVEIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPEYARKLGVDTDSLLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GEQALEI D LVRSGA++++V+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T 
Sbjct: 122 NGEQALEIADTLVRSGALELVVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +++ +    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RRV ++KD   + GN
Sbjct: 182 ALNAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRVETLKDGSEMVGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKV KNK+A PFKQ EFDI+YG+GIS  G LID+GV   I+ KSG+WFS+  ++LGQ
Sbjct: 242 RTRVKVAKNKVAPPFKQAEFDILYGQGISREGSLIDMGVDCGIITKSGSWFSYNNEQLGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           G+EN + FL+ N ++A  IE  +  + GL    + +     T +
Sbjct: 302 GKENVRKFLKGNPDVANEIEDKILTHLGLREAEVPEGVDPRTGE 345


>gi|288556912|ref|YP_003428847.1| recombinase A [Bacillus pseudofirmus OF4]
 gi|288548072|gb|ADC51955.1| recombinase A [Bacillus pseudofirmus OF4]
          Length = 349

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 212/349 (60%), Positives = 276/349 (79%), Gaps = 2/349 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG Q  + + +  VSSG+L LDIALG+GG+P+GR
Sbjct: 1   MGDRKAALDMALRQIEKQFGKGSIMKLGEQ--VDQRVSTVSSGALALDIALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT+ALH IA+ Q+ GG  AF+DAEHALD +YA+KLGV++  LL+SQPD
Sbjct: 59  IIEVYGPESSGKTTVALHAIAEIQRNGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVD+IVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDMIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I VFINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR  ++K  + + GN
Sbjct: 179 AINKSKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK+A PF+Q E DIMYGEGIS  G ++D+     IV KSGAW+SFK +RLGQ
Sbjct: 239 KTKIKVVKNKVAPPFRQAEVDIMYGEGISREGSILDIAADLDIVLKSGAWYSFKEERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           GRENSK +L+EN ++A  IE+L+R + GL  +  +        +D   D
Sbjct: 299 GRENSKQYLKENPDVASEIETLIRDHHGLNGEIKVDPATDEEFEDVPLD 347


>gi|25991691|gb|AAN76886.1| RecA [Burkholderia cepacia]
 gi|25991715|gb|AAN76898.1| RecA [Burkholderia cepacia]
 gi|25991717|gb|AAN76899.1| RecA [Burkholderia cepacia]
 gi|25991719|gb|AAN76900.1| RecA [Burkholderia cepacia]
 gi|25991723|gb|AAN76902.1| RecA [Burkholderia cepacia]
 gi|25991725|gb|AAN76903.1| RecA [Burkholderia cepacia]
 gi|25991747|gb|AAN76914.1| RecA [Burkholderia cepacia]
 gi|25991749|gb|AAN76915.1| RecA [Burkholderia cepacia]
 gi|298113121|gb|ADI58688.1| RecA [Burkholderia sp. CCUG 57241]
          Length = 333

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 227/325 (69%), Positives = 282/325 (86%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+ A
Sbjct: 300 EFLRENPEIALEIENRIRESLGVAA 324


>gi|330431987|gb|AEC17046.1| recombinase A [Gallibacterium anatis UMN179]
          Length = 355

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 227/354 (64%), Positives = 280/354 (79%), Gaps = 8/354 (2%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  DK +AL AAL QI++ +GKG+IM+LG   ++   +E VS+GSL LD+ALGIGG P G
Sbjct: 4   NNEDKERALAAALGQIEKQFGKGSIMRLGDTQTL--DVEAVSTGSLALDVALGIGGLPMG 61

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEI+GPESSGKTTL L  IAQ+QK G TCAF+DAEHALD IYA KLGVD+++LL+SQP
Sbjct: 62  RIVEIFGPESSGKTTLTLSVIAQAQKEGKTCAFIDAEHALDPIYASKLGVDVQSLLVSQP 121

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI D LVRSGAVD+I+IDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT
Sbjct: 122 DNGEQALEICDALVRSGAVDVIIIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLT 181

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
             I  + C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSI D D + G
Sbjct: 182 GHIKTANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSITDGDEVIG 241

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+TRVKVVKNK+A+PF+Q EF I+YGEGIS  GELI+LGVK  +++KSGAW+S+  +++G
Sbjct: 242 NETRVKVVKNKVAAPFRQAEFQILYGEGISKNGELIELGVKHKLLNKSGAWYSYNDEKIG 301

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           QGR N+  +L E+ E+A  +E  LR+      + LL        DD +K   D+
Sbjct: 302 QGRTNAMKWLAEHPEVAAELERKLREELLSNPEQLL------VADDTEKQPEDD 349


>gi|253681765|ref|ZP_04862562.1| protein RecA [Clostridium botulinum D str. 1873]
 gi|253561477|gb|EES90929.1| protein RecA [Clostridium botulinum D str. 1873]
          Length = 348

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 215/331 (64%), Positives = 273/331 (82%), Gaps = 3/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN  +K KAL+AAL+QI++ +GKG++M+LG +  +   IE +S+GSL LDIALGIGG P+
Sbjct: 1   MNN-EKMKALQAALTQIEKQFGKGSVMKLGEEQVL--NIEAISTGSLSLDIALGIGGIPR 57

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTT+ALH +A++QK GGT AF+DAEHALD IYA+ LGVD+ NL++SQ
Sbjct: 58  GRIIEIFGPESSGKTTVALHIVAEAQKAGGTAAFIDAEHALDPIYAKALGVDIDNLIVSQ 117

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI + LVRSGAVD+IV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL
Sbjct: 118 PDTGEQALEICEALVRSGAVDVIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKL 177

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T SI++SKC  +FINQ+R K+G+MFG+PETT GG ALKFY+SVRLD+R++  IK  D+  
Sbjct: 178 TGSINKSKCAAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRKIEIIKQGDAFL 237

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EFDIMYG GIS+ G ++D+GV+  I+ KSG+WFS+K  RL
Sbjct: 238 GNRTRVKVVKNKVAPPFKQAEFDIMYGSGISYEGNVLDVGVENEIIQKSGSWFSYKDTRL 297

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQGREN K FL+EN  I   +E+ +R    L
Sbjct: 298 GQGRENVKQFLKENPNILVEVENQIRAKHNL 328


>gi|329896396|ref|ZP_08271495.1| RecA protein [gamma proteobacterium IMCC3088]
 gi|328921816|gb|EGG29187.1| RecA protein [gamma proteobacterium IMCC3088]
          Length = 345

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 222/346 (64%), Positives = 280/346 (80%), Gaps = 3/346 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KALEAAL+QI+R +GKG +M++G    +   I  +S+GSLGLDIALGIGG PKGRI
Sbjct: 3   PNKQKALEAALAQIERQFGKGTVMRMGDSERV--AIPSISTGSLGLDIALGIGGLPKGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
            EIYGPESSGKTTL L  IA++QK GGT AF+DAEHALD IYA +LGV + +L++SQPDT
Sbjct: 61  CEIYGPESSGKTTLTLQVIAEAQKLGGTAAFIDAEHALDPIYAERLGVQVDDLILSQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALE+T+MLVRSGAVD++V+DSVAALTP+AEIEGDMG+S  G+QARL+SQA+RKLT S
Sbjct: 121 GEQALEVTEMLVRSGAVDVLVVDSVAALTPKAEIEGDMGDSHVGLQARLLSQAMRKLTGS 180

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++K+ D I GN+
Sbjct: 181 IKQTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKEGDEIVGNE 240

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EF IMYG GI   GELID GVK  ++DKSGAW+++KG ++GQG
Sbjct: 241 TRVKVVKNKVSPPFKQAEFQIMYGSGIYHNGELIDWGVKLGLIDKSGAWYAYKGDKIGQG 300

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           + N+  FL +N +IA+ IE+ +R    L      + P   T+D  +
Sbjct: 301 KANAAKFLSDNKDIADEIEAAIRAQT-LTTAKPAEAPVAETQDAGE 345


>gi|262277415|ref|ZP_06055208.1| protein RecA [alpha proteobacterium HIMB114]
 gi|262224518|gb|EEY74977.1| protein RecA [alpha proteobacterium HIMB114]
          Length = 376

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 242/349 (69%), Positives = 289/349 (82%), Gaps = 1/349 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KALEAA+ QI + +GKG++M+LG +      IE +S+GSL LDIALGIGG PK RIV
Sbjct: 18  DKQKALEAAIGQIDQNFGKGSVMKLGQKDQAL-DIEAISTGSLSLDIALGIGGLPKSRIV 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLAL  IA++QKTGG CAFVDAEHALD  YARKLGVD   LLISQPDTG
Sbjct: 77  EIYGPESSGKTTLALQVIAEAQKTGGVCAFVDAEHALDPTYARKLGVDTSELLISQPDTG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAV ++V+DSVAALTPRAE+EGDMG++  G+QARLMSQALRKLT SI
Sbjct: 137 EQALEIADTLVRSGAVSVLVVDSVAALTPRAELEGDMGDTHVGLQARLMSQALRKLTGSI 196

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S  +++FINQ+RMKIGVMFGSPETT GGNALKFYSSVR+DIRR+G+IK+KD I GNQT
Sbjct: 197 SKSNTMVIFINQIRMKIGVMFGSPETTAGGNALKFYSSVRMDIRRIGAIKEKDEIIGNQT 256

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK VEFDIMYGEGIS  GELIDLG KA+I++KSGAW+S+KG+++GQG+
Sbjct: 257 RVKVVKNKVAPPFKVVEFDIMYGEGISKMGELIDLGAKANIIEKSGAWYSYKGEKIGQGK 316

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           EN+K +L+ N+ IA  IE  +R NAGL+++ L   P    K +   + T
Sbjct: 317 ENAKQYLKNNLNIAAEIEMAIRANAGLISEKLEGNPIAKEKTEEVSEVT 365


>gi|213964486|ref|ZP_03392686.1| protein RecA [Corynebacterium amycolatum SK46]
 gi|213952679|gb|EEB64061.1| protein RecA [Corynebacterium amycolatum SK46]
          Length = 403

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 216/356 (60%), Positives = 282/356 (79%), Gaps = 7/356 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+ AL+ I++ +GKGA+M+LG        I+V+ SG++ +D+ALG+GGFP+GRIV
Sbjct: 50  DRLKALDVALANIEKDFGKGAVMRLGDDNR--PPIQVIPSGNIAIDVALGLGGFPRGRIV 107

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA++Q+ GG  AF+DAEHALD +YARKLGVD  NLL+SQPDTG
Sbjct: 108 EIYGPESSGKTTVALHAIAEAQRQGGIAAFIDAEHALDPVYARKLGVDTDNLLVSQPDTG 167

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSGA+DIIV+DSVAALTP+AEI+G+MG+S  G+QARLMSQALRK+T ++
Sbjct: 168 EQALEITDMLVRSGAIDIIVVDSVAALTPKAEIDGEMGDSHVGLQARLMSQALRKMTGAL 227

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR D+RR+ ++KD     GN+T
Sbjct: 228 SNTGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDVRRIQTLKDGQDAVGNRT 287

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK++ PFKQ EFDI+YGEGIS  G LID+GV   IV KSG+WF+++G +LGQG+
Sbjct: 288 RLKVVKNKVSPPFKQAEFDIIYGEGISREGSLIDMGVDNGIVKKSGSWFTYEGDQLGQGK 347

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL-----VADSLLQEPAINTKDDADKDDTDN 361
           E +++ LREN EIA+ IE  +++  G+     V D    +  ++   D D DD ++
Sbjct: 348 EKARMHLRENPEIAQEIEVKIKKKLGVGEFAEVEDETDIDAPVDVVPDIDFDDLED 403


>gi|25991685|gb|AAN76883.1| RecA [Burkholderia cepacia]
          Length = 334

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 231/340 (67%), Positives = 287/340 (84%), Gaps = 6/340 (1%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALPAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
            FLREN EIA  IE+ +R++ G+V       P    KD+A
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVT-----MPDGAAKDEA 334


>gi|150171052|emb|CAO01509.1| DNA recombination protein [Burkholderia seminalis]
          Length = 330

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 227/331 (68%), Positives = 282/331 (85%), Gaps = 5/331 (1%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEI
Sbjct: 1   SKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R
Sbjct: 120 ALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKR 179

Query: 193 SKC----ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           + C      +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 180 TNCLVTASCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 240 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           G++N++ FLREN EIA  IE+ +R++ G+ +
Sbjct: 300 GKDNAREFLRENPEIAREIENRIRESLGVAS 330


>gi|168207517|ref|ZP_02633522.1| recA protein [Clostridium perfringens E str. JGS1987]
 gi|169342683|ref|ZP_02863724.1| recA protein [Clostridium perfringens C str. JGS1495]
 gi|169299189|gb|EDS81259.1| recA protein [Clostridium perfringens C str. JGS1495]
 gi|170661136|gb|EDT13819.1| recA protein [Clostridium perfringens E str. JGS1987]
          Length = 352

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 213/347 (61%), Positives = 282/347 (81%), Gaps = 2/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+E A+ QI++ +GKG++M+LG QGS    ++ VS+G L LDIALGIGG PKGRI+
Sbjct: 7   DKLKAIEMAMGQIEKQFGKGSVMKLGEQGS--PQMDAVSTGCLDLDIALGIGGVPKGRII 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A++QK GG  A++DAEHALD +YA++LGV++ +L++SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHVVAEAQKLGGAAAYIDAEHALDPVYAKRLGVNIDDLVVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ LVRSGA+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT +I
Sbjct: 125 EQALEITEALVRSGAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGTI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++S C+++FINQ+R K+G+MFG+PETT GG ALKFY+SVR+DIRR+ SIK  D ITGN+T
Sbjct: 185 NKSNCVVIFINQLREKVGIMFGNPETTPGGRALKFYASVRMDIRRIDSIKQGDGITGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFKQ EFDIMY EGIS  G ++D+GVK +IV KSGAWFS+   RLGQGR
Sbjct: 245 RVKIVKNKVAPPFKQAEFDIMYNEGISKEGNIVDVGVKENIVQKSGAWFSYGDIRLGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           EN+K +L+EN  +A +IE+ +R+   L     ++  ++    +   +
Sbjct: 305 ENAKQYLKENPAVALDIENQIREKYSLPLAKAVESTSVEENTEESVE 351


>gi|50842495|ref|YP_055722.1| RecA protein [Propionibacterium acnes KPA171202]
 gi|289425313|ref|ZP_06427090.1| RecA protein [Propionibacterium acnes SK187]
 gi|289427094|ref|ZP_06428810.1| RecA protein [Propionibacterium acnes J165]
 gi|295130572|ref|YP_003581235.1| protein RecA [Propionibacterium acnes SK137]
 gi|59798221|sp|Q6A902|RECA_PROAC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|50082579|gb|AAT69987.1| RecA [Propionibacterium acnes]
 gi|50082581|gb|AAT69988.1| RecA [Propionibacterium acnes]
 gi|50082587|gb|AAT69991.1| RecA [Propionibacterium acnes]
 gi|50082589|gb|AAT69992.1| RecA [Propionibacterium acnes]
 gi|50082595|gb|AAT69995.1| RecA [Propionibacterium acnes]
 gi|50082605|gb|AAT70000.1| RecA [Propionibacterium acnes]
 gi|50082609|gb|AAT70002.1| RecA [Propionibacterium acnes]
 gi|50082611|gb|AAT70003.1| RecA [Propionibacterium acnes]
 gi|50082613|gb|AAT70004.1| RecA [Propionibacterium acnes]
 gi|50082615|gb|AAT70005.1| RecA [Propionibacterium acnes]
 gi|50082617|gb|AAT70006.1| RecA [Propionibacterium acnes]
 gi|50082619|gb|AAT70007.1| RecA [Propionibacterium acnes]
 gi|50082621|gb|AAT70008.1| RecA [Propionibacterium acnes]
 gi|50082623|gb|AAT70009.1| RecA [Propionibacterium acnes]
 gi|50082625|gb|AAT70010.1| RecA [Propionibacterium acnes]
 gi|50082627|gb|AAT70011.1| RecA [Propionibacterium acnes]
 gi|50082629|gb|AAT70012.1| RecA [Propionibacterium acnes]
 gi|50082631|gb|AAT70013.1| RecA [Propionibacterium acnes]
 gi|50082633|gb|AAT70014.1| RecA [Propionibacterium acnes]
 gi|50082641|gb|AAT70018.1| RecA [Propionibacterium acnes]
 gi|50082653|gb|AAT70024.1| RecA [Propionibacterium acnes]
 gi|50082655|gb|AAT70025.1| RecA [Propionibacterium acnes]
 gi|50082657|gb|AAT70026.1| RecA [Propionibacterium acnes]
 gi|50082659|gb|AAT70027.1| RecA [Propionibacterium acnes]
 gi|50082661|gb|AAT70028.1| RecA [Propionibacterium acnes]
 gi|50082663|gb|AAT70029.1| RecA [Propionibacterium acnes]
 gi|50840097|gb|AAT82764.1| RecA protein [Propionibacterium acnes KPA171202]
 gi|68137191|gb|AAY85536.1| RecA [Propionibacterium acnes]
 gi|68137193|gb|AAY85537.1| RecA [Propionibacterium acnes]
 gi|68137195|gb|AAY85538.1| RecA [Propionibacterium acnes]
 gi|91177065|gb|ABE26887.1| putative immunogenic protein antigen 84 [Propionibacterium acnes]
 gi|91177067|gb|ABE26888.1| putative immunogenic protein antigen 84 [Propionibacterium acnes]
 gi|91177069|gb|ABE26889.1| putative immunogenic protein antigen 84 [Propionibacterium acnes]
 gi|110348482|gb|ABG72895.1| RecA [Propionibacterium acnes]
 gi|110348484|gb|ABG72896.1| RecA [Propionibacterium acnes]
 gi|110348486|gb|ABG72897.1| RecA [Propionibacterium acnes]
 gi|110348490|gb|ABG72899.1| RecA [Propionibacterium acnes]
 gi|289154291|gb|EFD02979.1| RecA protein [Propionibacterium acnes SK187]
 gi|289159563|gb|EFD07751.1| RecA protein [Propionibacterium acnes J165]
 gi|291375310|gb|ADD99164.1| protein RecA [Propionibacterium acnes SK137]
 gi|306450655|gb|ADM88580.1| RecA [Propionibacterium acnes 266]
 gi|313764477|gb|EFS35841.1| protein RecA [Propionibacterium acnes HL013PA1]
 gi|313772141|gb|EFS38107.1| protein RecA [Propionibacterium acnes HL074PA1]
 gi|313792163|gb|EFS40264.1| protein RecA [Propionibacterium acnes HL110PA1]
 gi|313801884|gb|EFS43118.1| protein RecA [Propionibacterium acnes HL110PA2]
 gi|313807496|gb|EFS45983.1| protein RecA [Propionibacterium acnes HL087PA2]
 gi|313810005|gb|EFS47726.1| protein RecA [Propionibacterium acnes HL083PA1]
 gi|313812964|gb|EFS50678.1| protein RecA [Propionibacterium acnes HL025PA1]
 gi|313816015|gb|EFS53729.1| protein RecA [Propionibacterium acnes HL059PA1]
 gi|313818539|gb|EFS56253.1| protein RecA [Propionibacterium acnes HL046PA2]
 gi|313820306|gb|EFS58020.1| protein RecA [Propionibacterium acnes HL036PA1]
 gi|313822887|gb|EFS60601.1| protein RecA [Propionibacterium acnes HL036PA2]
 gi|313825181|gb|EFS62895.1| protein RecA [Propionibacterium acnes HL063PA1]
 gi|313827755|gb|EFS65469.1| protein RecA [Propionibacterium acnes HL063PA2]
 gi|313830333|gb|EFS68047.1| protein RecA [Propionibacterium acnes HL007PA1]
 gi|313833707|gb|EFS71421.1| protein RecA [Propionibacterium acnes HL056PA1]
 gi|313838710|gb|EFS76424.1| protein RecA [Propionibacterium acnes HL086PA1]
 gi|314915469|gb|EFS79300.1| protein RecA [Propionibacterium acnes HL005PA4]
 gi|314918247|gb|EFS82078.1| protein RecA [Propionibacterium acnes HL050PA1]
 gi|314920060|gb|EFS83891.1| protein RecA [Propionibacterium acnes HL050PA3]
 gi|314925193|gb|EFS89024.1| protein RecA [Propionibacterium acnes HL036PA3]
 gi|314932074|gb|EFS95905.1| protein RecA [Propionibacterium acnes HL067PA1]
 gi|314955945|gb|EFT00345.1| protein RecA [Propionibacterium acnes HL027PA1]
 gi|314958150|gb|EFT02253.1| protein RecA [Propionibacterium acnes HL002PA1]
 gi|314960024|gb|EFT04126.1| protein RecA [Propionibacterium acnes HL002PA2]
 gi|314962822|gb|EFT06922.1| protein RecA [Propionibacterium acnes HL082PA1]
 gi|314967811|gb|EFT11910.1| protein RecA [Propionibacterium acnes HL037PA1]
 gi|314973338|gb|EFT17434.1| protein RecA [Propionibacterium acnes HL053PA1]
 gi|314976015|gb|EFT20110.1| protein RecA [Propionibacterium acnes HL045PA1]
 gi|314978446|gb|EFT22540.1| protein RecA [Propionibacterium acnes HL072PA2]
 gi|314983963|gb|EFT28055.1| protein RecA [Propionibacterium acnes HL005PA1]
 gi|314988147|gb|EFT32238.1| protein RecA [Propionibacterium acnes HL005PA2]
 gi|314989951|gb|EFT34042.1| protein RecA [Propionibacterium acnes HL005PA3]
 gi|315078038|gb|EFT50089.1| protein RecA [Propionibacterium acnes HL053PA2]
 gi|315080663|gb|EFT52639.1| protein RecA [Propionibacterium acnes HL078PA1]
 gi|315084335|gb|EFT56311.1| protein RecA [Propionibacterium acnes HL027PA2]
 gi|315085677|gb|EFT57653.1| protein RecA [Propionibacterium acnes HL002PA3]
 gi|315088901|gb|EFT60877.1| protein RecA [Propionibacterium acnes HL072PA1]
 gi|315096253|gb|EFT68229.1| protein RecA [Propionibacterium acnes HL038PA1]
 gi|315098514|gb|EFT70490.1| protein RecA [Propionibacterium acnes HL059PA2]
 gi|315101128|gb|EFT73104.1| protein RecA [Propionibacterium acnes HL046PA1]
 gi|315105404|gb|EFT77380.1| protein RecA [Propionibacterium acnes HL030PA1]
 gi|315108349|gb|EFT80325.1| protein RecA [Propionibacterium acnes HL030PA2]
 gi|327326165|gb|EGE67955.1| protein RecA [Propionibacterium acnes HL096PA2]
 gi|327331960|gb|EGE73697.1| protein RecA [Propionibacterium acnes HL096PA3]
 gi|327443161|gb|EGE89815.1| protein RecA [Propionibacterium acnes HL013PA2]
 gi|327445947|gb|EGE92601.1| protein RecA [Propionibacterium acnes HL043PA2]
 gi|327448074|gb|EGE94728.1| protein RecA [Propionibacterium acnes HL043PA1]
 gi|327450804|gb|EGE97458.1| protein RecA [Propionibacterium acnes HL087PA3]
 gi|327453119|gb|EGE99773.1| protein RecA [Propionibacterium acnes HL092PA1]
 gi|327453851|gb|EGF00506.1| protein RecA [Propionibacterium acnes HL083PA2]
 gi|328753492|gb|EGF67108.1| protein RecA [Propionibacterium acnes HL020PA1]
 gi|328754223|gb|EGF67839.1| protein RecA [Propionibacterium acnes HL087PA1]
 gi|328754526|gb|EGF68142.1| protein RecA [Propionibacterium acnes HL025PA2]
 gi|328760613|gb|EGF74180.1| protein RecA [Propionibacterium acnes HL099PA1]
          Length = 348

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 209/344 (60%), Positives = 266/344 (77%), Gaps = 2/344 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+ KAL  AL QI++ +GKG+IM+LG Q ++   I  + +GS+ LD+ALG+GG P+GR
Sbjct: 4   TADREKALATALQQIEKQHGKGSIMRLGEQETV--KIAAIPTGSVALDVALGVGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEIYGPESSGKTT+ALH IA +Q  GG CAF+DAEHALD  YARKLGVD  +LL+SQPD
Sbjct: 62  IVEIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPEYARKLGVDTDSLLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GEQALEI D LVRSGA+++IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T 
Sbjct: 122 NGEQALEIADTLVRSGALELIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +++ +    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RRV ++KD   + GN
Sbjct: 182 ALNAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRVETLKDGSEMVGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKV KNK+A PFKQ EFDI+YG+GIS  G LID+GV   I+ KSG+WFS+  ++LGQ
Sbjct: 242 RTRVKVAKNKVAPPFKQAEFDILYGQGISREGSLIDMGVDCGIITKSGSWFSYNNEQLGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           G+EN + FLR N ++A  IE  +  + GL    + +     T +
Sbjct: 302 GKENVRKFLRGNPDVANEIEDKILTHLGLREAEVPEGVDPRTGE 345


>gi|171742631|ref|ZP_02918438.1| hypothetical protein BIFDEN_01744 [Bifidobacterium dentium ATCC
           27678]
 gi|171278245|gb|EDT45906.1| hypothetical protein BIFDEN_01744 [Bifidobacterium dentium ATCC
           27678]
          Length = 451

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 208/352 (59%), Positives = 275/352 (78%), Gaps = 8/352 (2%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  ALE AL+Q+++ +GKG+ M+LG +    + +EV+ +GSL LD+ALGIGG PKGRIVE
Sbjct: 89  RQAALETALAQVEKNFGKGSAMRLGDRPE--QDVEVIPTGSLALDMALGIGGLPKGRIVE 146

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH +A +QK GG  AF+DAEHALD +YARKLGVD  +L++SQPD GE
Sbjct: 147 IYGPESSGKTTLALHVVANAQKKGGVAAFIDAEHALDPVYARKLGVDTDSLIVSQPDNGE 206

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T +++
Sbjct: 207 QALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALA 266

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGV FG+PETTTGG ALKFY+SVR+DIRR+ +IK+ D   GN+TR
Sbjct: 267 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRMDIRRIQTIKNGDEAVGNRTR 326

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNKMA PFK  EFD++YGEGIS  G ++D+ ++ ++V KSG+WF++ G +LGQGRE
Sbjct: 327 VKVVKNKMAPPFKSAEFDVLYGEGISKEGSVLDMALQVNVVKKSGSWFTYDGDQLGQGRE 386

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           N + FL++N  + E IE+ ++   GL+      EP     +D D ++T   E
Sbjct: 387 NVRQFLKDNPGVTEEIENRVKAAFGLI------EPTDQFAEDGDGNETAASE 432


>gi|77359646|ref|YP_339221.1| RecA protein (recombinase A) [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874557|emb|CAI85778.1| RecA protein (Recombinase A) [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 347

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 231/347 (66%), Positives = 282/347 (81%), Gaps = 2/347 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +K KAL+AALSQI+R +GKG+IM+LG   ++   IE VS+GSLG+DIALGIGG P GR
Sbjct: 2   NDNKQKALDAALSQIERQFGKGSIMKLGDNKAL--NIESVSTGSLGIDIALGIGGLPMGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVE+YGPESSGKTTL L  IA++QK G TCAF+DAEHALD +YA+KLGV++  L +SQPD
Sbjct: 60  IVEVYGPESSGKTTLTLQVIAEAQKEGKTCAFIDAEHALDPVYAQKLGVNIDELFVSQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DMLVRS AVD+++IDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT 
Sbjct: 120 TGEQALEICDMLVRSSAVDVVIIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I RS  + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIRR+GS+K+ D + GN
Sbjct: 180 NIKRSNTLCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRIDIRRIGSVKEGDEVVGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVK+VKNK+A PFKQ EF IMYGEGIS  GELIDLGVK  IV+K+GAW+S+ G ++GQ
Sbjct: 240 ETRVKIVKNKVAPPFKQAEFIIMYGEGISKQGELIDLGVKHKIVEKAGAWYSYCGNKVGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           G+ NS  FL+EN EIA+ IE  LR+   L A     +      D+AD
Sbjct: 300 GKSNSIKFLKENPEIADEIEGKLREMLLLKATIEPDDGEDKLGDEAD 346


>gi|168216960|ref|ZP_02642585.1| recA protein [Clostridium perfringens NCTC 8239]
 gi|182380878|gb|EDT78357.1| recA protein [Clostridium perfringens NCTC 8239]
          Length = 352

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 215/353 (60%), Positives = 287/353 (81%), Gaps = 8/353 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+E A+ QI++ +GKG++M+LG QG+    ++ VS+G L LDIALGIGG PKGRI+
Sbjct: 7   DKLKAIEMAMGQIEKQFGKGSVMKLGEQGA--PQMDAVSTGCLDLDIALGIGGVPKGRII 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A++QK GG  A++DAEHALD +YA++LGV++ +L++SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHVVAEAQKLGGAAAYIDAEHALDPVYAKRLGVNIDDLVVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ LVRSGA+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT +I
Sbjct: 125 EQALEITEALVRSGAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGTI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++S C+++FINQ+R K+G+MFG+PETT GG ALKFY+SVR+DIRR+ SIK  D ITGN+T
Sbjct: 185 NKSNCVVIFINQLREKVGIMFGNPETTPGGRALKFYASVRMDIRRIDSIKQGDGITGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFKQ EFDIMY EGIS  G ++D+GVK +IV KSGAWFS+   RLGQGR
Sbjct: 245 RVKIVKNKVAPPFKQAEFDIMYNEGISKEGNIVDVGVKENIVQKSGAWFSYGDIRLGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           EN+K +L+EN  +A +IE+ +R+   L     ++  ++      +++  D+VE
Sbjct: 305 ENAKQYLKENPAVALDIENQIREKYSLPLAKAVESTSV------EENTEDSVE 351


>gi|18310655|ref|NP_562589.1| recombinase A [Clostridium perfringens str. 13]
 gi|110799772|ref|YP_696360.1| recombinase A [Clostridium perfringens ATCC 13124]
 gi|168211439|ref|ZP_02637064.1| recA protein [Clostridium perfringens B str. ATCC 3626]
 gi|168214494|ref|ZP_02640119.1| recA protein [Clostridium perfringens CPE str. F4969]
 gi|3219851|sp|P94666|RECA_CLOPE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123148691|sp|Q0TPT0|RECA_CLOP1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|1698591|gb|AAC45139.1| RecA protein [Clostridium perfringens]
 gi|18145336|dbj|BAB81379.1| recA protein [Clostridium perfringens str. 13]
 gi|110674419|gb|ABG83406.1| recA protein [Clostridium perfringens ATCC 13124]
 gi|170710594|gb|EDT22776.1| recA protein [Clostridium perfringens B str. ATCC 3626]
 gi|170714025|gb|EDT26207.1| recA protein [Clostridium perfringens CPE str. F4969]
          Length = 352

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 212/347 (61%), Positives = 282/347 (81%), Gaps = 2/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+E A+ QI++ +GKG++M+LG QG+    ++ VS+G L LDIALGIGG PKGRI+
Sbjct: 7   DKLKAIEMAMGQIEKQFGKGSVMKLGEQGA--PQMDAVSTGCLDLDIALGIGGVPKGRII 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A++QK GG  A++DAEHALD +YA++LGV++ +L++SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHVVAEAQKLGGAAAYIDAEHALDPVYAKRLGVNIDDLVVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ LVRSGA+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT +I
Sbjct: 125 EQALEITEALVRSGAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGTI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++S C+++FINQ+R K+G+MFG+PETT GG ALKFY+SVR+DIRR+ SIK  D ITGN+T
Sbjct: 185 NKSNCVVIFINQLREKVGIMFGNPETTPGGRALKFYASVRMDIRRIDSIKQGDGITGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFKQ EFDIMY EGIS  G ++D+GVK +IV KSGAWFS+   RLGQGR
Sbjct: 245 RVKIVKNKVAPPFKQAEFDIMYNEGISKEGNIVDVGVKENIVQKSGAWFSYGDIRLGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           EN+K +L+EN  +A +IE+ +R+   L     ++  ++    +   +
Sbjct: 305 ENAKQYLKENPAVALDIENQIREKYSLPLAKAVESTSVEENTEESVE 351


>gi|28460070|emb|CAD67594.1| RecA protein [Burkholderia anthina]
          Length = 332

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 226/324 (69%), Positives = 282/324 (87%), Gaps = 1/324 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGP
Sbjct: 1   LAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALE
Sbjct: 60  ESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           ITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C
Sbjct: 120 ITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNC 179

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVV
Sbjct: 180 LVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVV 239

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ 
Sbjct: 240 KNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNARE 299

Query: 316 FLRENIEIAENIESLLRQNAGLVA 339
           FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 FLRENPEIAREIENRIRESLGVVA 323


>gi|220928127|ref|YP_002505036.1| recA protein [Clostridium cellulolyticum H10]
 gi|219998455|gb|ACL75056.1| recA protein [Clostridium cellulolyticum H10]
          Length = 347

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 207/331 (62%), Positives = 272/331 (82%), Gaps = 2/331 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           +++K KALE AL QI++ +GKGA+M+LG    +   +E++ +GS+ LD+ALG+GG P+GR
Sbjct: 1   MLEKRKALEMALGQIEKQFGKGAVMKLGENSHM--NVEIIPTGSMSLDLALGVGGVPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEI+GPESSGKTT+ALH IA++QK GG  AF+DAEHALD +YA+KLGVD++NL++SQPD
Sbjct: 59  IVEIFGPESSGKTTVALHIIAEAQKAGGEAAFIDAEHALDPVYAKKLGVDIENLIVSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEIT+ LVRSGA+D+IV+DSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL  
Sbjct: 119 TGEQALEITEALVRSGAIDVIVVDSVAALVPKAEIDGEMGDSHIGLQARLMSQALRKLAG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            IS+S+   +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+RR+ +IK  + + GN
Sbjct: 179 VISKSRTTAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRRIEAIKQSNEVVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFK+ EFDI+YGEGIS  G ++D+ V   IV+KSGAWFS+  QR+GQ
Sbjct: 239 RTRVKVVKNKVAPPFKEAEFDIVYGEGISREGSILDIAVNMEIVNKSGAWFSYNSQRIGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           GREN+K +L+EN  +   IE L+R N  + A
Sbjct: 299 GRENAKQYLKENPAMCSEIEKLVRSNFTVTA 329


>gi|115376627|ref|ZP_01463857.1| RecA protein [Stigmatella aurantiaca DW4/3-1]
 gi|310819426|ref|YP_003951784.1| RecA protein [Stigmatella aurantiaca DW4/3-1]
 gi|115366370|gb|EAU65375.1| RecA protein [Stigmatella aurantiaca DW4/3-1]
 gi|309392498|gb|ADO69957.1| RecA protein [Stigmatella aurantiaca DW4/3-1]
          Length = 360

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 210/348 (60%), Positives = 280/348 (80%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +K KA+E A+S ++R +GKG+IM+LG    +   I+ +S+GS+ LDIALG+GG PKGR
Sbjct: 4   NSEKEKAIELAMSAVERQFGKGSIMRLGKDEPLTRDIQAISTGSISLDIALGVGGVPKGR 63

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEI+GPESSGKTTL LH +A++QK GG C ++DAEHALD  YARKLGV   +LL+SQPD
Sbjct: 64  IVEIFGPESSGKTTLCLHIVAEAQKRGGICGYIDAEHALDVGYARKLGVRTDDLLLSQPD 123

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI +MLVRSGA+D++V+DSVAAL P+AE+EG+MG++  G+QARLMSQALRKLT 
Sbjct: 124 TGEQALEIAEMLVRSGAIDVLVVDSVAALVPKAELEGEMGDAHMGVQARLMSQALRKLTG 183

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +IS+S+  ++FINQ+RMKIGVMFG+PETTTGGNALKFY+S RLDIRR+G+IK+ +++ G+
Sbjct: 184 TISKSQTCVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIGAIKNGENVVGS 243

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFK+VEFDIMYG GIS  G+LIDL    +IV+KSG+WF+FKG+R+GQ
Sbjct: 244 RTRVKVVKNKVAPPFKEVEFDIMYGTGISREGDLIDLASNENIVEKSGSWFAFKGERIGQ 303

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           GREN+K +LRE+ +  + IE+ + +  G+   ++   P         +
Sbjct: 304 GRENAKDYLREHPDTYKEIEARVLEKYGVTKPAVAAVPDEPEPSSEGE 351


>gi|110348494|gb|ABG72901.1| RecA [Propionibacterium acnes]
 gi|110348496|gb|ABG72902.1| RecA [Propionibacterium acnes]
 gi|110348498|gb|ABG72903.1| RecA [Propionibacterium acnes]
 gi|110348500|gb|ABG72904.1| RecA [Propionibacterium acnes]
 gi|110348502|gb|ABG72905.1| RecA [Propionibacterium acnes]
          Length = 348

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 208/344 (60%), Positives = 266/344 (77%), Gaps = 2/344 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+ KAL  AL QI++ +GKG+IM+LG Q ++   I  + +GS+ LD+ALG+GG P+GR
Sbjct: 4   TADREKALATALQQIEKQHGKGSIMRLGEQETV--KIAAIPTGSVALDVALGVGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEIYGPESSGKTT+ALH IA +Q  GG CAF+DAEHALD  YARKLGVD  +LL+SQPD
Sbjct: 62  IVEIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPEYARKLGVDTDSLLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GEQALEI D LVRSGA+++IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T 
Sbjct: 122 NGEQALEIADTLVRSGALELIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +++ +    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RRV ++KD   + GN
Sbjct: 182 ALNAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRVETLKDGSEMVGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKV KNK+A PFKQ EFDI+YG+GIS  G LID+GV   I+ KSG+WFS+  ++LGQ
Sbjct: 242 RTRVKVAKNKVAPPFKQAEFDILYGQGISREGSLIDMGVDCGIITKSGSWFSYNNEQLGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           G+EN + FL+ N ++A  IE  +  + GL    + +     T +
Sbjct: 302 GKENVRKFLKGNPDVANEIEDKILTHLGLREAEVPEGVDPRTGE 345


>gi|302389774|ref|YP_003825595.1| RecA protein [Thermosediminibacter oceani DSM 16646]
 gi|302200402|gb|ADL07972.1| RecA protein [Thermosediminibacter oceani DSM 16646]
          Length = 343

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 208/342 (60%), Positives = 271/342 (79%), Gaps = 1/342 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           +++K KALE AL+QI+R +GKG+IM+LG   S F  +EV+ +G+L LDIALG+GG P+GR
Sbjct: 1   MMEKQKALEMALAQIERQFGKGSIMRLGEAESKFN-VEVIPTGALPLDIALGVGGVPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EI+GPESSGKTT+ALH +A++QK GGT AF+DAEHALD  YARKLGVD  NLLISQPD
Sbjct: 60  IIEIFGPESSGKTTVALHIVAEAQKAGGTAAFIDAEHALDPTYARKLGVDTDNLLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVD+IVIDSVAAL P+AE+EG+MGE+  G+QARLMSQALRKL  
Sbjct: 120 TGEQALEIAEALVRSGAVDVIVIDSVAALVPKAELEGEMGEAHVGLQARLMSQALRKLAG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           SIS+SK + +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+++R+   IKD +++ G 
Sbjct: 180 SISKSKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMEVRKTSVIKDGENVVGT 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +  VKVVKNK+A PFK  EFDIMYGEGIS  G ++D   +A I+ KSGAW+S++ +R+GQ
Sbjct: 240 RASVKVVKNKVAPPFKSAEFDIMYGEGISREGCVLDFATEAGIIQKSGAWYSYEKERIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           GREN+K +L+E+ E+ + IE  +++   LV     +      
Sbjct: 300 GRENAKQYLKEHPEVLKAIELKVKEKFNLVKSESKKTEGTEE 341


>gi|70904890|gb|AAZ14023.1| RecA [Burkholderia cenocepacia]
          Length = 332

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 226/324 (69%), Positives = 282/324 (87%), Gaps = 1/324 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGP
Sbjct: 1   LAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALE
Sbjct: 60  ESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           ITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C
Sbjct: 120 ITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNC 179

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           +++FINQ+RMKIGVMFG+PETTTGGNA+KFYSSVRLDIRR+GSIK  D + GN+TRVKVV
Sbjct: 180 LVIFINQIRMKIGVMFGNPETTTGGNAVKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVV 239

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ 
Sbjct: 240 KNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNARE 299

Query: 316 FLRENIEIAENIESLLRQNAGLVA 339
           FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 FLRENPEIAREIENRIRESLGVVA 323


>gi|266619254|ref|ZP_06112189.1| protein RecA [Clostridium hathewayi DSM 13479]
 gi|288869251|gb|EFD01550.1| protein RecA [Clostridium hathewayi DSM 13479]
          Length = 325

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 213/326 (65%), Positives = 271/326 (83%), Gaps = 1/326 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN  DK KAL+AA++QI++ YGKG++M+LG  GS+   +E + +GSL LDIALG+GG PK
Sbjct: 1   MNKDDKLKALDAAITQIEKAYGKGSVMKLGD-GSVNMNVETIPTGSLSLDIALGLGGIPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTT+ALH IA+ QK GG   F+DAEHALD +YA+K+GVD+ NL ISQ
Sbjct: 60  GRVVEIYGPESSGKTTVALHMIAEVQKRGGIAGFIDAEHALDPVYAKKIGVDIDNLYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT+ +VRSGAVDII++DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL
Sbjct: 120 PDNGEQALEITETMVRSGAVDIIIVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T  IS+S C ++FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+DIRR+ S+K    + 
Sbjct: 180 TGVISKSNCTVLFINQLREKVGVMFGNPETTTGGRALKFYASVRMDIRRIESLKQGGEVV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ RVKVVKNK+A PFK+ EFDIM+G GIS  G+++DL VK  IV+KSGAWF++ G ++
Sbjct: 240 GNRVRVKVVKNKIAPPFKEAEFDIMFGRGISKEGDVLDLAVKEDIVEKSGAWFAYGGAKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332
           GQGREN+KI+L++N  + E IE+ +R
Sbjct: 300 GQGRENAKIYLQDNPAVCEEIENKVR 325


>gi|134095796|ref|YP_001100871.1| recombinase A [Herminiimonas arsenicoxydans]
 gi|166220651|sp|A4G8B3|RECA_HERAR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|133739699|emb|CAL62750.1| Protein RecA (Recombinase A) [Herminiimonas arsenicoxydans]
          Length = 367

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 230/363 (63%), Positives = 294/363 (80%), Gaps = 1/363 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD +K     DKSKAL AAL+QI++ +GKG++M++   G++ E ++VVS+GSLGLD+ALG
Sbjct: 1   MDDKKNAPSSDKSKALAAALAQIEKQFGKGSVMRM-EDGAVVEEVQVVSTGSLGLDLALG 59

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG P+GR+VEIYGPESSGKTTL L TIA+ QK GGTCAF+DAEHALD  YA+KLG++L 
Sbjct: 60  VGGLPRGRVVEIYGPESSGKTTLTLQTIAEMQKLGGTCAFIDAEHALDVTYAQKLGINLS 119

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LLISQPDTGEQALEI D LVRSG VD+IVIDSVAALTPRAEIEGDMG+SLPG+QARLMS
Sbjct: 120 ELLISQPDTGEQALEICDALVRSGGVDLIVIDSVAALTPRAEIEGDMGDSLPGLQARLMS 179

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT SI+R+  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK
Sbjct: 180 QALRKLTGSINRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIK 239

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             D + GN+T+VKVVKNK+A PFK+  F+I+YGEG S  GE++DLG  A IV+KSGAW+S
Sbjct: 240 SGDEVIGNETKVKVVKNKIAPPFKEAHFEILYGEGTSREGEILDLGSDAKIVEKSGAWYS 299

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           + G+R+GQG++N++ +L+E  E+A  IE+ +R + G+     ++      K  + K+  +
Sbjct: 300 YNGERIGQGKDNARNYLKERPELAREIENKVRASLGVPELGAIKSDEPVAKKASAKESKE 359

Query: 361 NVE 363
             E
Sbjct: 360 AKE 362


>gi|242133648|gb|ACS87935.1| RecA [Burkholderia cepacia]
          Length = 333

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 226/325 (69%), Positives = 282/325 (86%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FL EN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLLENPEIAREIENRIRESLGVVA 324


>gi|25991681|gb|AAN76881.1| RecA [Burkholderia cepacia]
          Length = 334

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 228/325 (70%), Positives = 283/325 (87%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALPAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324


>gi|239787354|emb|CAX83831.1| Protein RecA [uncultured bacterium]
          Length = 353

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 218/354 (61%), Positives = 280/354 (79%), Gaps = 1/354 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+  +K KAL+AAL+QI+R +GKG++M+LG + +    IE +S+GSLGLD+ALGIGG PK
Sbjct: 1   MSTAEKVKALDAALAQIERNFGKGSVMRLGQKDTSMN-IESISTGSLGLDLALGIGGLPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL LH IA+ QK GG CAFVDAEHALD  YARKLGV  + L+ISQ
Sbjct: 60  GRIIEIFGPESSGKTTLTLHVIAECQKKGGICAFVDAEHALDPSYARKLGVKTEELIISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D LVRSGAVDIIVIDSVAAL P+AE+EGDMG+S  G+QARLMSQALRK+
Sbjct: 120 PDTGEQALEIADTLVRSGAVDIIVIDSVAALVPKAELEGDMGDSHMGLQARLMSQALRKI 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T SIS++ C+++FINQ+R KIG++FG+PETTTGGNALKFY+SVRLDIRR+G++KDK+ I 
Sbjct: 180 TGSISKTNCMVIFINQIRQKIGIVFGNPETTTGGNALKFYASVRLDIRRIGAVKDKEEIV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GNQTRVKVVKNKMA PF+ VEFD+ YG GIS  GE+ID+GV   +++KSG+W+S+K  ++
Sbjct: 240 GNQTRVKVVKNKMAPPFRTVEFDVSYGSGISKTGEIIDMGVNVGLIEKSGSWYSYKNNKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           GQGRE +K +L+E+ ++A  +E  +R       ++             +    +
Sbjct: 300 GQGREVAKTYLKEHPDVARELEQQIRAKYDKNPEAAFVIDQSEETAATEGSAGE 353


>gi|78044103|ref|YP_360011.1| recA protein [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996218|gb|ABB15117.1| recA protein [Carboxydothermus hydrogenoformans Z-2901]
          Length = 343

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 210/344 (61%), Positives = 276/344 (80%), Gaps = 1/344 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + DK KALE  +SQI++ +GKG+IM+LG     F+ +EV+ +GSL LD+ALG+GG P+GR
Sbjct: 1   MNDKLKALELTISQIEKQFGKGSIMRLGENTGKFQ-VEVIPTGSLALDLALGVGGVPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEI+GPESSGKTT+ALH IA++QK GG  AF+DAEHALD +YA+KLGVD++NLL+SQPD
Sbjct: 60  VVEIFGPESSGKTTVALHIIAEAQKMGGIAAFIDAEHALDPVYAQKLGVDIENLLVSQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGA+D+IVIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKLT 
Sbjct: 120 TGEQALEIAESLVRSGAIDVIVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +IS+SK + +FINQMR K+GVMFG+PETT GG ALKFY+S+R+D+R++  IK  + I G+
Sbjct: 180 AISKSKTVAIFINQMREKVGVMFGNPETTPGGRALKFYASIRMDVRKIDVIKQGNDIIGS 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVK+VKNK+A PFKQ +FDIMYGEGIS  G L+D+ V+  IV K G+W+S+  +RLGQ
Sbjct: 240 RTRVKIVKNKVAPPFKQADFDIMYGEGISKEGSLLDVAVELKIVQKVGSWYSYNDERLGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GREN+K FLR+N EI   IE  +R+      +S   + +   ++
Sbjct: 300 GRENAKEFLRQNPEIYREIEQKIREQVLNSPESSSFKNSEEFEE 343


>gi|332140353|ref|YP_004426091.1| recombinase A [Alteromonas macleodii str. 'Deep ecotype']
 gi|238693255|sp|B4RVU1|RECA_ALTMD RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|327550375|gb|AEA97093.1| recombinase A [Alteromonas macleodii str. 'Deep ecotype']
          Length = 348

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 227/344 (65%), Positives = 278/344 (80%), Gaps = 2/344 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AA+ QI++ +GKGAIM+LG   ++   IE +S+GSL +DIALGIGG P GR+V
Sbjct: 4   NKSKALTAAVGQIEKQFGKGAIMRLGDNQAM--DIEAISTGSLTIDIALGIGGLPCGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD +YA KLGV++  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAEAQKNGKTCAFVDAEHALDPVYAEKLGVNIDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGAVD++++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT++I
Sbjct: 122 EQALEICDMLVRSGAVDVVIVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTANI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  + +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G++K+ D + GN+T
Sbjct: 182 KRSNTLCIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAVKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF I YGEGIS   ELIDLGVK  +VDK+GAW+S+KG R+GQG+
Sbjct: 242 RVKVVKNKVAPPFKQAEFMIRYGEGISKEAELIDLGVKQKLVDKAGAWYSYKGDRIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
            N   +L+E+ E A  IE+ +RQ   L      +E     +DD 
Sbjct: 302 ANVMKYLKEHPETANEIETKIRQELLLSKTVKAEEALPQGEDDV 345


>gi|256390779|ref|YP_003112343.1| recA protein [Catenulispora acidiphila DSM 44928]
 gi|256357005|gb|ACU70502.1| recA protein [Catenulispora acidiphila DSM 44928]
          Length = 383

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 209/339 (61%), Positives = 269/339 (79%), Gaps = 4/339 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+ KAL+AAL+QI+R +GKG++M+LG      + I+++ +GS+ LD+ALGIGG P+GR
Sbjct: 5   TTDREKALDAALAQIERNFGKGSVMRLG--ARSVQPIDIIPTGSIALDVALGIGGLPRGR 62

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTT+ALH +A +QK GG  AF+DAEHALD  YAR +GVD   LLISQPD
Sbjct: 63  VVEIYGPESSGKTTIALHAVANAQKAGGQAAFIDAEHALDPDYARNIGVDTDLLLISQPD 122

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI D L+RSGA+DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT 
Sbjct: 123 TGEQALEIADTLIRSGALDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTG 182

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            I ++   ++FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD      N
Sbjct: 183 VIHQTNTTVIFINQLREKVGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTEAVAN 242

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFKQ EFD+++G GIS  G LID+GV+   V K+GAWF++   +LGQ
Sbjct: 243 RTRVKVVKNKVAPPFKQAEFDVVFGSGISREGSLIDMGVEHGFVKKAGAWFTYSEGQLGQ 302

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           GREN++ FL+EN ++A+ +E L+++  G+     L EPA
Sbjct: 303 GRENARRFLKENPDVADGLEKLIKEKLGIGPK--LDEPA 339


>gi|294790979|ref|ZP_06756137.1| protein RecA [Scardovia inopinata F0304]
 gi|294458876|gb|EFG27229.1| protein RecA [Scardovia inopinata F0304]
          Length = 368

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 205/353 (58%), Positives = 269/353 (76%), Gaps = 2/353 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
             +  AL  AL+Q+++ +GKG+ M+LG +      +EV+ +GSL LD+ALGIGG P+GRI
Sbjct: 13  AQRQAALNTALAQVEKAFGKGSAMRLGDKP--VTHVEVIPTGSLALDMALGIGGLPRGRI 70

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEI+GPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YAR LGVD  +L+ISQPD 
Sbjct: 71  VEIFGPESSGKTTIALHAVANAQRNGGVAAFIDAEHALDPEYARNLGVDTDSLIISQPDN 130

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DIIVIDSVAAL P+AEI+G+MG++  G+QARLMSQALRK+T +
Sbjct: 131 GEQALEIADMLIRSGALDIIVIDSVAALVPKAEIDGEMGDNHVGLQARLMSQALRKMTGA 190

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +S+S    VFINQ+R KIGVMFG+PETTTGG ALKFY+SVRLDIRRV ++K+ D   GN+
Sbjct: 191 LSQSHTTAVFINQLREKIGVMFGNPETTTGGKALKFYASVRLDIRRVQTLKNGDEAIGNR 250

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFK  EFDI+YGEG+S  G +ID+ +   I+ KSG+WF++ G +LGQG
Sbjct: 251 TRVKVVKNKMAPPFKSAEFDILYGEGVSREGSIIDMALSTGIIKKSGSWFTYDGDQLGQG 310

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           RE  + FL++N E+   +E+ ++   GL+ D    +   NT  +     +DN+
Sbjct: 311 RERVRQFLKDNPELETELETKIKVAYGLIPDPNAAQEEKNTDSEQKGASSDNI 363


>gi|119468993|ref|ZP_01612018.1| RecA protein (Recombinase A) [Alteromonadales bacterium TW-7]
 gi|119447645|gb|EAW28912.1| RecA protein (Recombinase A) [Alteromonadales bacterium TW-7]
          Length = 347

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 233/347 (67%), Positives = 283/347 (81%), Gaps = 2/347 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +K KAL+AALSQI+R +GKG+IM+LG   ++   I+ VS+GSLG+DIALGIGG P GR
Sbjct: 2   NDNKQKALDAALSQIERQFGKGSIMKLGDNKAL--NIDAVSTGSLGIDIALGIGGLPMGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVE+YGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD +YA+KLGV++  LL+SQPD
Sbjct: 60  IVEVYGPESSGKTTLTLQVIAQAQKEGKTCAFVDAEHALDPVYAQKLGVNIDELLVSQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DMLVRS AVD++++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT 
Sbjct: 120 TGEQALEICDMLVRSSAVDVVIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I RS  + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIRR+GS+K+ D + GN
Sbjct: 180 NIKRSNTLCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRIDIRRIGSVKEGDEVVGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVK+VKNK+A PFKQ EF IMYGEGIS  GELIDLGVK  IV+K+GAW+S+ G ++GQ
Sbjct: 240 ETRVKIVKNKVAPPFKQAEFIIMYGEGISKQGELIDLGVKHKIVEKAGAWYSYNGNKVGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           G+ NS  FL+EN+EIA  IE  LR    L A    ++      DDAD
Sbjct: 300 GKNNSIKFLKENVEIANEIEGKLRDMLLLKATIEPEDGEDVLGDDAD 346


>gi|226322616|ref|ZP_03798134.1| hypothetical protein COPCOM_00388 [Coprococcus comes ATCC 27758]
 gi|225208953|gb|EEG91307.1| hypothetical protein COPCOM_00388 [Coprococcus comes ATCC 27758]
          Length = 375

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 204/363 (56%), Positives = 275/363 (75%), Gaps = 1/363 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M     MN  +K KAL+AA++++++ +GKGA+M+LG   +    +E V +GSL LD+ALG
Sbjct: 14  MMANNTMNDENKKKALDAAIAKLEKDFGKGAVMKLGD-PAAQVHVETVPTGSLSLDLALG 72

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG PKGRI+EIYGPESSGKTT+ALH IA+ QK GG   F+DAEHALD +YA+ +GVD+ 
Sbjct: 73  VGGVPKGRIIEIYGPESSGKTTVALHMIAEVQKRGGIAGFIDAEHALDPVYAKNIGVDID 132

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            L ISQPD+G+QALEIT+ +VRSGA+DIIV+DSVAAL P+ EIEGDMG++  G+QARLMS
Sbjct: 133 ELYISQPDSGDQALEITETMVRSGAIDIIVVDSVAALVPKQEIEGDMGDTHVGLQARLMS 192

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT  IS+S C+++FINQ+R K+GVMFG+PETTTGG ALKFYSSVR+D+RR  ++K
Sbjct: 193 QALRKLTPVISKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRMDVRRTETLK 252

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
               + GN  RVK+VKNK+A PFK+ EFDIM+G+GIS  G+++DL  K  +V+KSGAW++
Sbjct: 253 QGGEMVGNHVRVKIVKNKIAPPFKEAEFDIMFGKGISREGDILDLATKIDLVNKSGAWYA 312

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           + G+++GQGREN+K +L  + EI E IE  +R + G+ A+    E          ++  D
Sbjct: 313 YNGEKIGQGRENAKSYLTAHPEIMEEIEEKVRAHYGIGAEGQEAEEPAQAAPADAEEVMD 372

Query: 361 NVE 363
             E
Sbjct: 373 EEE 375


>gi|225874847|ref|YP_002756306.1| recA protein [Acidobacterium capsulatum ATCC 51196]
 gi|225793263|gb|ACO33353.1| recA protein [Acidobacterium capsulatum ATCC 51196]
          Length = 360

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 206/337 (61%), Positives = 281/337 (83%), Gaps = 1/337 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+S+A+E ALSQI++ +GKG+IM+LGS+ ++   I  +S+GS+  D ALG+GG P+GR+V
Sbjct: 4   DRSRAVELALSQIEKQFGKGSIMRLGSKEAVV-PISTISTGSISFDAALGVGGVPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTT+ L  IA++QK GG  AFVDAEHALD IYA+KLGVD+ NLL+SQPD G
Sbjct: 63  EIFGPESSGKTTITLQIIAEAQKAGGMAAFVDAEHALDPIYAQKLGVDVDNLLVSQPDYG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ LVRSGA+D++V+DSVAAL P+AE++G+MG+S  G+QARLMSQALRKLT ++
Sbjct: 123 EQALEITEALVRSGAIDVLVVDSVAALVPKAELDGEMGDSHVGLQARLMSQALRKLTGTV 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S+  L+FINQ+R KIGVMFG+PETTTGG ALKFYSSVR+DIRR+ ++K+ D++ G++T
Sbjct: 183 SKSRTCLIFINQIREKIGVMFGNPETTTGGRALKFYSSVRVDIRRIAAVKEGDTVVGSRT 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A+PF++ EFDI+YGEGIS  G+++DL V  +IV+KSGAW+S+ G+R+GQGR
Sbjct: 243 RVKIVKNKVAAPFREAEFDILYGEGISREGDVLDLAVAHNIVEKSGAWYSYSGERIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           EN + FL+EN +  + I++ LRQ  G+   ++ Q   
Sbjct: 303 ENVRSFLKENRDTFQRIDTQLRQKLGITLANVPQAEV 339


>gi|25991669|gb|AAN76875.1| RecA [Burkholderia cepacia]
          Length = 334

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 227/325 (69%), Positives = 282/325 (86%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
            FLREN EIA  IE+ +R++ G+V 
Sbjct: 300 EFLRENPEIAREIENRIRESLGVVT 324


>gi|330850717|gb|AEC46661.1| RecA [Propionibacterium acnes]
          Length = 341

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 207/336 (61%), Positives = 263/336 (78%), Gaps = 2/336 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+ KAL  AL QI++ +GKG+IM+LG Q ++   I  + +GS+ LD+ALG+GG P+GR
Sbjct: 4   TADREKALATALQQIEKQHGKGSIMRLGEQETV--KIAAIPTGSVALDVALGVGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEIYGPESSGKTT+ALH IA +Q  GG CAF+DAEHALD  YA KLGVD  +LL+SQPD
Sbjct: 62  IVEIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPEYAHKLGVDTDSLLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GEQALEI D LVRSGA+++IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T 
Sbjct: 122 NGEQALEIADTLVRSGALELIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +++ +    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RRV ++KD   + GN
Sbjct: 182 ALNAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRVETLKDGSEMVGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKV KNK+A PFKQ EFDI+YG+GIS  G LID+GV   I+ KSG+WFS+  ++LGQ
Sbjct: 242 RTRVKVAKNKVAPPFKQAEFDILYGQGISREGSLIDMGVDCGIITKSGSWFSYNNEQLGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
           G+EN + FLR N ++A  IE  +  + GL    + +
Sbjct: 302 GKENVRKFLRGNPDVANEIEDKILTHLGLREAEVPE 337


>gi|300718058|ref|YP_003742861.1| Recombinase A [Erwinia billingiae Eb661]
 gi|299063894|emb|CAX61014.1| Recombinase A [Erwinia billingiae Eb661]
          Length = 355

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 216/351 (61%), Positives = 276/351 (78%), Gaps = 2/351 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIASAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++T
Sbjct: 184 KNSGTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+ +GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQIMYGEGINIYGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
            NS  FL+EN  IA  IE+ LR       D+     A   + D   +  +N
Sbjct: 304 ANSGNFLKENPAIANEIEAKLRATLLTNPDTKPDFVATAAELDETSETNEN 354


>gi|153855273|ref|ZP_01996439.1| hypothetical protein DORLON_02453 [Dorea longicatena DSM 13814]
 gi|149752272|gb|EDM62203.1| hypothetical protein DORLON_02453 [Dorea longicatena DSM 13814]
          Length = 353

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 203/354 (57%), Positives = 276/354 (77%), Gaps = 1/354 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   DK +AL+AA++++++ +GKG +M+LG   S    +E + +GSL LD+ALG+GG PK
Sbjct: 1   MANEDKKRALDAAIAKLEKDFGKGTVMRLGD-PSAQVAVETIPTGSLSLDLALGLGGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYGPESSGKTT+ALH IA+ QK GG   F+DAEHALD +YA+ +GVD+  L ISQ
Sbjct: 60  GRIVEIYGPESSGKTTVALHMIAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDELYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+G+QALEIT+ +VRSGA+DIIV+DSVAAL P+ EIEGDMG+S  G+QARLMSQALRKL
Sbjct: 120 PDSGDQALEITETMVRSGAMDIIVVDSVAALVPKQEIEGDMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T  IS+S C+++FINQ+R K+GVMFG+PETTTGG ALKFYSSVR+D+RR+ ++K    + 
Sbjct: 180 TPVISKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRMDVRRIETLKQSGEMV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVK+VKNK+A PFK+ EFDIM+G+GIS  G+++DL VK  +V KSGAWF++ G ++
Sbjct: 240 GNRTRVKIVKNKIAPPFKEAEFDIMFGKGISKEGDILDLAVKCDLVSKSGAWFAYNGDKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           GQGREN+K +L E+ EI E +E  +R +  + A+  ++E   +   +    + +
Sbjct: 300 GQGRENAKTYLSEHPEIMEELEQKIRAHYHIGAEGDVEENEESATAEGITKEEE 353


>gi|28899324|ref|NP_798929.1| recombinase A [Vibrio parahaemolyticus RIMD 2210633]
 gi|260361826|ref|ZP_05774842.1| RecA protein [Vibrio parahaemolyticus K5030]
 gi|260878985|ref|ZP_05891340.1| RecA protein [Vibrio parahaemolyticus AN-5034]
 gi|260895458|ref|ZP_05903954.1| RecA protein [Vibrio parahaemolyticus Peru-466]
 gi|260903522|ref|ZP_05911917.1| RecA protein [Vibrio parahaemolyticus AQ4037]
 gi|31340322|sp|Q87LR1|RECA_VIBPA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|28807548|dbj|BAC60813.1| RecA protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088223|gb|EFO37918.1| RecA protein [Vibrio parahaemolyticus Peru-466]
 gi|308090465|gb|EFO40160.1| RecA protein [Vibrio parahaemolyticus AN-5034]
 gi|308108708|gb|EFO46248.1| RecA protein [Vibrio parahaemolyticus AQ4037]
 gi|308114474|gb|EFO52014.1| RecA protein [Vibrio parahaemolyticus K5030]
 gi|328474143|gb|EGF44948.1| recombinase A [Vibrio parahaemolyticus 10329]
          Length = 347

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 211/347 (60%), Positives = 281/347 (80%), Gaps = 4/347 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+K+GAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
            N+  +LRE+ EIA+ I++ LR+   L++ +  + PA   K + +++
Sbjct: 302 ANACNYLREHPEIAKTIDTKLREM--LLSPAQPEAPAAGEKPEQEEE 346


>gi|309811276|ref|ZP_07705065.1| RecA protein [Dermacoccus sp. Ellin185]
 gi|308434758|gb|EFP58601.1| RecA protein [Dermacoccus sp. Ellin185]
          Length = 364

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 202/347 (58%), Positives = 272/347 (78%), Gaps = 2/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK K+L+  ++QI++ +GKG+IM+LG    +   IEV+ + S+ LD+ALGIGG P+GR+V
Sbjct: 15  DKIKSLDTVMAQIEKAHGKGSIMRLGED--VRPPIEVIPTSSIALDVALGIGGLPRGRVV 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +QK GG  AF+DAEHALD  YARKLGVD  +LL+SQPDTG
Sbjct: 73  EIYGPESSGKTTVALHAVANAQKAGGIAAFIDAEHALDPEYARKLGVDTDSLLVSQPDTG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSG++DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 133 EQALEIADMLIRSGSLDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGAL 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+T
Sbjct: 193 NSTGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRIDVRRIETLKDGSEPVGNRT 252

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R K+VKNK+A PFKQ EFDI+YG+GIS  G LID+GV+   V KSGAW++++G +LGQG+
Sbjct: 253 RAKIVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEQGFVRKSGAWYTYEGDQLGQGK 312

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           EN++ FL++N ++ + +E  +++  G++ D       ++     D +
Sbjct: 313 ENARTFLKDNPQLTDELELKIKKKLGIIPDDDAVLEGLDPDAPIDAE 359


>gi|197259608|gb|ACH56445.1| RecA type I [Propionibacterium acnes]
          Length = 336

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 208/334 (62%), Positives = 263/334 (78%), Gaps = 2/334 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+ KAL  AL QI++ +GKG+IM+LG Q ++   I  + +GS+ LD+ALG+GG P+GR
Sbjct: 4   TADREKALATALQQIEKQHGKGSIMRLGEQETV--KIAAIPTGSVALDVALGVGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEIYGPESSGKTT+ALH IA +Q  GG CAF+DAEHALD  YARKLGVD  +LL+SQPD
Sbjct: 62  IVEIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPEYARKLGVDTDSLLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GEQALEI D LVRSGA+++IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T 
Sbjct: 122 NGEQALEIADTLVRSGALELIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +++ +    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RRV ++KD   + GN
Sbjct: 182 ALNAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRVETLKDGSEMVGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKV KNK+A PFKQ EFDI+YG+GIS  G LID+GV   I+ KSG+WFS+  ++LGQ
Sbjct: 242 RTRVKVAKNKVAPPFKQAEFDILYGQGISREGSLIDMGVDCGIITKSGSWFSYNNEQLGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSL 342
           G+EN + FLR N ++A  IE  +  + GL    +
Sbjct: 302 GKENVRKFLRGNPDVANEIEDKILTHLGLREAEV 335


>gi|1350557|sp|P48292|RECA2_MYXXA RecName: Full=Protein RecA 2; AltName: Full=Recombinase A 2
 gi|848996|gb|AAC37001.1| recA2 [Myxococcus xanthus]
          Length = 358

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 210/329 (63%), Positives = 276/329 (83%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +K KA+E A+S ++R +GKG+IM+LG+   +   ++ + +GS+ LDIALG+GG PKGR
Sbjct: 4   NQEKEKAIELAMSAVERQFGKGSIMRLGNDEPMMRDVQAIPTGSISLDIALGVGGVPKGR 63

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EI+GPESSGKTTL LH +A++QK GG C +VDAEHALD  YARKLGV   +LL+SQPD
Sbjct: 64  IIEIFGPESSGKTTLCLHIVAEAQKRGGICGYVDAEHALDVGYARKLGVRTDDLLLSQPD 123

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI +MLVRSGA+D++V+DSVAAL P+AE+EG+MG++  G+QARLMSQALRKLT 
Sbjct: 124 TGEQALEIAEMLVRSGAIDVLVVDSVAALVPKAELEGEMGDAHMGVQARLMSQALRKLTG 183

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++S+  ++FINQ+RMKIGVMFG+PETTTGGNALKFY+S RLDIRR+G+IK+ D++ G+
Sbjct: 184 TIAKSQTCVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIGAIKNGDNVVGS 243

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFK+VEFDIMYG GIS  G+LIDL    +IV+KSG+WFSF G+R+GQ
Sbjct: 244 RTRVKVVKNKVAPPFKEVEFDIMYGTGISREGDLIDLASNENIVEKSGSWFSFNGERIGQ 303

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGL 337
           GREN K +LRE+ EIA++IE  + +  G+
Sbjct: 304 GRENVKEYLREHPEIAKDIEGRVLEKYGI 332


>gi|50082593|gb|AAT69994.1| RecA [Propionibacterium acnes]
 gi|327330235|gb|EGE71984.1| protein RecA [Propionibacterium acnes HL097PA1]
          Length = 348

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 209/344 (60%), Positives = 266/344 (77%), Gaps = 2/344 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+ KAL  AL QI++ +GKG+IM+LG Q ++   I  + +GS+ LD+ALG+GG P+GR
Sbjct: 4   TADREKALATALQQIEKQHGKGSIMRLGEQETV--KIAAIPTGSVALDVALGVGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEIYGPESSGKTT+ALH IA +Q  GG CAF+DAEHALD  YARKLGVD  +LL+SQPD
Sbjct: 62  IVEIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPEYARKLGVDTNSLLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GEQALEI D LVRSGA+++IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T 
Sbjct: 122 NGEQALEIADTLVRSGALELIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +++ +    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RRV ++KD   + GN
Sbjct: 182 ALNAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRVETLKDGSEMVGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKV KNK+A PFKQ EFDI+YG+GIS  G LID+GV   I+ KSG+WFS+  ++LGQ
Sbjct: 242 RTRVKVAKNKVAPPFKQAEFDILYGQGISREGSLIDMGVDCGIITKSGSWFSYNNEQLGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           G+EN + FLR N ++A  IE  +  + GL    + +     T +
Sbjct: 302 GKENVRKFLRGNPDVANEIEDKILTHLGLREAEVPEGVDPRTGE 345


>gi|121606843|ref|YP_984172.1| recombination protein RecA [Polaromonas naphthalenivorans CJ2]
 gi|254790441|sp|A1VUC3|RECA_POLNA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|120595812|gb|ABM39251.1| recA protein [Polaromonas naphthalenivorans CJ2]
          Length = 384

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 230/354 (64%), Positives = 291/354 (82%), Gaps = 5/354 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +K++AL  AL+QI++ +GKG IM+LG  G + E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 12  NTEKARALAVALAQIEKQFGKGTIMKLG-AGEVIEDIQVVSTGSLGLDIALGVGGLPRGR 70

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGTCAFVDAEHALD  YA+KLGV+L+ LLISQPD
Sbjct: 71  VVEIYGPESSGKTTLTLQVIAEMQKIGGTCAFVDAEHALDIQYAQKLGVNLQELLISQPD 130

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI D L RSGAVD+IVIDSVAALTP+AE+EG+MG+SLPG+QARLMSQALRKLT+
Sbjct: 131 TGEQALEIVDSLTRSGAVDLIVIDSVAALTPKAELEGEMGDSLPGLQARLMSQALRKLTA 190

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 191 TIKKANCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGDEVIGN 250

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+ASPFK  EFDI+YGEGIS  GE++DLGV   +V+K+GAW++++G+++GQ
Sbjct: 251 ETRVKVVKNKVASPFKMAEFDILYGEGISRLGEVLDLGVANHVVEKAGAWYAYRGEKIGQ 310

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGL----VADSLLQEPAINTKDDADKDD 358
           GR+NS+ FL+EN  +A  IE+ +R+  G+     A    +       +  +K D
Sbjct: 311 GRDNSREFLKENPALAIEIENKVREALGIPLVQAAQGSAEPEKAAKPEKVEKAD 364


>gi|157326963|gb|ABV44594.1| RecA [Burkholderia cenocepacia]
          Length = 325

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 226/324 (69%), Positives = 282/324 (87%), Gaps = 1/324 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGP
Sbjct: 1   LAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALE
Sbjct: 60  ESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           ITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C
Sbjct: 120 ITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNC 179

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVV
Sbjct: 180 LVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVV 239

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ 
Sbjct: 240 KNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNARE 299

Query: 316 FLRENIEIAENIESLLRQNAGLVA 339
           FLREN EIA  IE+ +R++ G+V+
Sbjct: 300 FLRENPEIAREIENRIRESLGVVS 323


>gi|257068236|ref|YP_003154491.1| recombination protein RecA [Brachybacterium faecium DSM 4810]
 gi|256559054|gb|ACU84901.1| protein RecA [Brachybacterium faecium DSM 4810]
          Length = 368

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 209/327 (63%), Positives = 263/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  +L+ AL+QI R +GKG+IM+LG        +EV+ +GS+ LD ALG+GG P+GRIV
Sbjct: 14  DRGSSLDNALAQIDRQFGKGSIMRLGDDTR--PPVEVIPTGSVALDAALGVGGLPRGRIV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH +A +Q+ GG  AF+DAEHA+D  YA+KLGVD   LL+SQPDTG
Sbjct: 72  EIYGPESSGKTTLALHAVANAQRNGGIAAFIDAEHAMDPEYAKKLGVDTDALLVSQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDML+RSGA+DI+VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT ++
Sbjct: 132 EQALEITDMLIRSGALDIVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGAL 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S S    +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+DIRR+ ++K      GN+T
Sbjct: 192 SSSGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRMDIRRIETLKAGTDSVGNRT 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFKQ EFDI+YGEGIS  G L+DLGV+  +V KSGAWF+++G +LGQG+
Sbjct: 252 RVKVVKNKMAPPFKQAEFDILYGEGISREGGLLDLGVEHGVVRKSGAWFTYEGDQLGQGK 311

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           ENS+ FL++N ++A  IE  + +  G+
Sbjct: 312 ENSRQFLKDNPDLAAEIEEKILRTLGV 338


>gi|110801858|ref|YP_698960.1| recombinase A [Clostridium perfringens SM101]
 gi|123047323|sp|Q0SSE7|RECA_CLOPS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|110682359|gb|ABG85729.1| recA protein [Clostridium perfringens SM101]
          Length = 352

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 212/347 (61%), Positives = 282/347 (81%), Gaps = 2/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+E A+ QI++ +GKG++M+LG QG+    ++ VS+G L LDIALGIGG PKGRI+
Sbjct: 7   DKLKAIEMAMGQIEKQFGKGSVMKLGEQGA--PQMDAVSTGCLDLDIALGIGGVPKGRII 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A++QK GG  A++DAEHALD +YA++LGV++ +L++SQPDTG
Sbjct: 65  EIYGPESSGKTTVALHVVAEAQKLGGAAAYIDAEHALDPVYAKRLGVNIDDLVVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ LVRSGA+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT +I
Sbjct: 125 EQALEITEALVRSGAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGTI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++S C+++FINQ+R K+G+MFG+PETT GG ALKFY+SVR+DIRR+ SIK  D ITGN+T
Sbjct: 185 NKSNCVVIFINQLREKVGIMFGNPETTPGGRALKFYASVRMDIRRIDSIKQGDGITGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFKQ EFDIMY EGIS  G ++D+GVK +IV KSGAWFS+   RLGQGR
Sbjct: 245 RVKIVKNKVAPPFKQAEFDIMYNEGISKEGNIVDVGVKENIVQKSGAWFSYGDIRLGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           EN+K +L+EN  +A +IE+ +R+   L     ++  ++    +   +
Sbjct: 305 ENAKQYLKENPSVALDIENQIREKYSLPLAKAVESTSVEKNTEESVE 351


>gi|218290126|ref|ZP_03494288.1| recA protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218239835|gb|EED07024.1| recA protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 352

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 208/335 (62%), Positives = 268/335 (80%), Gaps = 2/335 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + DK  ALE AL  I++ +GKG+IM+LG   ++   +E V +GS+ LDIALG+GG P+GR
Sbjct: 1   MGDKKAALEQALKHIEKQFGKGSIMRLGEAAAMT--VETVPTGSIALDIALGVGGLPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEIYGPESSGKTT+ALH +A+ QK GG  AF+DAEHALD +YA+KLGV++  LLISQPD
Sbjct: 59  IVEIYGPESSGKTTVALHVVAEVQKLGGQAAFIDAEHALDPVYAQKLGVNIDELLISQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVD+IV+DSVAAL P+ E+EGDMG+S  G+QARLMSQALRKL  
Sbjct: 119 TGEQALEIAEALVRSGAVDVIVVDSVAALVPKNELEGDMGDSHVGLQARLMSQALRKLAG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +IS+SK I +FINQ+R K+GVMFG+PETTTGG ALKFY+SVRL++RRV +IK  + + G+
Sbjct: 179 AISKSKTIAIFINQIREKVGVMFGNPETTTGGRALKFYASVRLEVRRVEAIKQGNDVVGS 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TR+KVVKNK+A PF+Q + DIM+GEGIS  G LID+  +  +V KSGAW+S+  +RLGQ
Sbjct: 239 RTRIKVVKNKVAPPFRQCDVDIMFGEGISREGSLIDIATEIDVVQKSGAWYSYGEERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343
           GREN+K FL+E+ EIAE IE+ +R+   +     L
Sbjct: 299 GRENAKQFLKEHPEIAEQIEAAVREYFHVNPAKPL 333


>gi|70904898|gb|AAZ14027.1| RecA [Burkholderia cenocepacia]
          Length = 328

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 225/325 (69%), Positives = 281/325 (86%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+ MKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIPMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
             LREN EIA  IE+ +R++ G+V+
Sbjct: 300 ELLRENPEIAREIENRIRESLGVVS 324


>gi|253689582|ref|YP_003018772.1| recA protein [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|259563340|sp|C6DCR1|RECA_PECCP RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|251756160|gb|ACT14236.1| recA protein [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 357

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 214/353 (60%), Positives = 277/353 (78%), Gaps = 2/353 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++T
Sbjct: 184 KQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N+  FL+EN  +A  ++  LR+      + L    A N+ D+    D  N E
Sbjct: 304 ANACNFLKENPAVAAELDKKLREMLLHKGNELTPATAGNSHDEDAFADEGNEE 356


>gi|77164441|ref|YP_342966.1| DNA recombination protein, RecA [Nitrosococcus oceani ATCC 19707]
 gi|254433644|ref|ZP_05047152.1| protein RecA [Nitrosococcus oceani AFC27]
 gi|76882755|gb|ABA57436.1| RecA protein [Nitrosococcus oceani ATCC 19707]
 gi|207089977|gb|EDZ67248.1| protein RecA [Nitrosococcus oceani AFC27]
          Length = 342

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 222/334 (66%), Positives = 282/334 (84%), Gaps = 1/334 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL AALSQI++ +GKGA+M+LG   SI   +EV+S+GSLGLDIALG+GG P+GR+V
Sbjct: 4   NRKKALGAALSQIEKQFGKGAVMRLGD-ASIVREVEVISTGSLGLDIALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPE+SGKTTLAL   A++Q  GGT AFVDAEHALD  YA +LGV +++LL+SQPDTG
Sbjct: 63  EIFGPEASGKTTLALQVAAEAQALGGTAAFVDAEHALDPQYAERLGVSVEDLLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGAVD++VIDSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 123 EQALEIADMLVRSGAVDVVVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRRVG++K  D I GN+T
Sbjct: 183 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGALKKGDEIVGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFKQV FDI+YG G+S  GE+IDLGV+   ++K+GAW+S+ G+R+GQGR
Sbjct: 243 RVKVVKNKMAPPFKQVSFDILYGSGVSREGEIIDLGVREGFIEKAGAWYSYNGERIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
           +N + FL+E+ E+A+ IE+ +R+       +L +
Sbjct: 303 DNVRQFLKEHRELAQGIEAHIREKLLPGKAALEE 336


>gi|150171064|emb|CAO01515.1| DNA recombination protein [Burkholderia diffusa]
          Length = 333

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 226/324 (69%), Positives = 280/324 (86%), Gaps = 1/324 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL+QI + +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGP
Sbjct: 1   LAAALAQIDKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALE
Sbjct: 60  ESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           ITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C
Sbjct: 120 ITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNC 179

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVV
Sbjct: 180 LVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVV 239

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ 
Sbjct: 240 KNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNARE 299

Query: 316 FLRENIEIAENIESLLRQNAGLVA 339
           FLREN EIA  IE+ +R++ G+ A
Sbjct: 300 FLRENPEIAREIENRIRESLGVAA 323


>gi|145300676|ref|YP_001143517.1| recombinase A [Aeromonas salmonicida subsp. salmonicida A449]
 gi|148887151|sp|P94190|RECA_AERS4 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|142853448|gb|ABO91769.1| RecA protein [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 353

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 221/353 (62%), Positives = 278/353 (78%), Gaps = 3/353 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LD+ALGIGG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDSKTM--DIEAISTGSLSLDVALGIGGLPCGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G  CAF+DAEHALD IYA KLGV++ +LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAEAQKKGKVCAFIDAEHALDPIYAAKLGVNVDDLLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS AVD+I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 122 EQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+ +FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+T
Sbjct: 182 KNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF I YG GIS  GEL+DLGVK  ++DK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVAPPFKQAEFQIFYGVGISKEGELVDLGVKHKLIDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N      EN  +A  +E+ LR+   L  D   ++P +   D+ + +     E
Sbjct: 302 ANVMKLFTENKVMAAEVEARLRELL-LSGDVPAEKPVVADADELEAESEQEFE 353


>gi|229824701|ref|ZP_04450770.1| hypothetical protein GCWU000182_00049 [Abiotrophia defectiva ATCC
           49176]
 gi|229791030|gb|EEP27144.1| hypothetical protein GCWU000182_00049 [Abiotrophia defectiva ATCC
           49176]
          Length = 369

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 210/357 (58%), Positives = 281/357 (78%), Gaps = 2/357 (0%)

Query: 2   DYRKEMNIV-DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
              K MN+  DK KALEAA++QI++ +GKG+IM+LGS       +EVV +G L LD+ALG
Sbjct: 5   AKEKIMNVDNDKRKALEAAIAQIEKDFGKGSIMKLGSGMDKMN-VEVVPTGCLSLDLALG 63

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG PKGRI+E+YGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YA+ +GV++ 
Sbjct: 64  LGGIPKGRIIEVYGPESSGKTTVALHMVAEVQKAGGIAGFIDAEHALDPVYAKAIGVNID 123

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            L ISQPD+GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+GDMG+S  G+QARLMS
Sbjct: 124 ELYISQPDSGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGDMGDSHVGLQARLMS 183

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLTS IS++ CI+VFINQ+R KIGVMFG+PETTTGG ALKFY+S+R+D+R+  +IK
Sbjct: 184 QALRKLTSVISKTNCIVVFINQLREKIGVMFGNPETTTGGRALKFYASIRMDVRKADAIK 243

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
               + GN+T++KVVKNK+A PFK+ +FDIM+G+GIS  G+++D+ V  +IV KSGAWFS
Sbjct: 244 QGGDVVGNRTKIKVVKNKIAPPFKEAQFDIMFGQGISRTGDVLDIAVDDNIVVKSGAWFS 303

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           + G+++GQGREN KI+L  N E+ + IE+ +R+     A  +  E  +  +DD  KD
Sbjct: 304 YNGEKIGQGRENVKIYLDSNPEVFKEIEAKVRETHAKKASDVSSEEPVLEEDDEQKD 360


>gi|310641627|ref|YP_003946385.1| reca/rada recombinase (multifunctional sos repair regulator)
           [Paenibacillus polymyxa SC2]
 gi|309246577|gb|ADO56144.1| RecA/RadA recombinase (Multifunctional SOS repair regulator)
           [Paenibacillus polymyxa SC2]
          Length = 370

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 214/344 (62%), Positives = 271/344 (78%), Gaps = 2/344 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG    +   +E + SGS+ LDIALG GGFP+GR
Sbjct: 18  LSDRRAALDMALRQIEKQFGKGSIMKLGESTHM--QVETIPSGSIALDIALGTGGFPRGR 75

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT+ALH IA+ QKTGG  AF+DAEHALD  YA KLGV++  LL+SQPD
Sbjct: 76  IIEVYGPESSGKTTVALHAIAEVQKTGGQAAFIDAEHALDPSYASKLGVNIDELLLSQPD 135

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDIIV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ 
Sbjct: 136 TGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSG 195

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRLD+RR+ S+K  + I GN
Sbjct: 196 AINKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRIESLKMGNDIVGN 255

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TR+KVVKNK+A PF+Q E DIMYGEGIS  G LID+G +  IVDKSGAW+S++G+RLGQ
Sbjct: 256 RTRIKVVKNKVAPPFRQAEVDIMYGEGISKEGSLIDIGTEHDIVDKSGAWYSYEGERLGQ 315

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GREN+K FL+EN  IA  IE  +R  + L+            ++
Sbjct: 316 GRENAKQFLKENPNIASTIEQKIRVASNLITTIAPPTEEELAQE 359


>gi|262199062|ref|YP_003270271.1| recA protein [Haliangium ochraceum DSM 14365]
 gi|262082409|gb|ACY18378.1| recA protein [Haliangium ochraceum DSM 14365]
          Length = 379

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 215/335 (64%), Positives = 275/335 (82%), Gaps = 1/335 (0%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           + +     + KA++ AL  I++ +GKG+IM+LG+   I   ++ + +GSLGLDIALGIGG
Sbjct: 3   KDDNGNAQREKAIDLALGAIEKQFGKGSIMRLGTDP-IEANVQTIPTGSLGLDIALGIGG 61

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P+GRI+EIYGPESSGKTTL LH IA++Q+ GG  AF+DAEHALD  YA+KLGV    LL
Sbjct: 62  LPRGRIIEIYGPESSGKTTLTLHAIAEAQRRGGVAAFIDAEHALDVSYAKKLGVKTDELL 121

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPD GEQALEI DMLVRS A+D++VIDSVAALTPRAE+EG+MG+S  G+QARLMSQAL
Sbjct: 122 VSQPDFGEQALEIADMLVRSNALDLVVIDSVAALTPRAELEGEMGDSHVGLQARLMSQAL 181

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT +IS+S+  ++FINQ+R+KIGVMFGSPETTTGGNALKFY SVRLDIRR+G+IK  D
Sbjct: 182 RKLTGAISKSRTTVIFINQIRLKIGVMFGSPETTTGGNALKFYCSVRLDIRRIGAIKKDD 241

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+TRVKVVKNKMA PF++VEFDI+YG GIS  G+L+DLGV A+I+DKSGAW+S+  
Sbjct: 242 QVVGNRTRVKVVKNKMAPPFREVEFDILYGHGISREGDLLDLGVAANIIDKSGAWYSYGS 301

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLV 338
           +R+GQGRENSK+FL+E+ E+  +IE  + +  G+ 
Sbjct: 302 ERIGQGRENSKVFLQEHPEVYLDIEGKVLEAYGIA 336


>gi|114330801|ref|YP_747023.1| recombinase A [Nitrosomonas eutropha C91]
 gi|122314264|sp|Q0AHX4|RECA_NITEC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|114307815|gb|ABI59058.1| RecA protein [Nitrosomonas eutropha C91]
          Length = 343

 Score =  378 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 218/341 (63%), Positives = 278/341 (81%), Gaps = 1/341 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K+KAL AAL+QI++ YGKG+IM+LG    + + I+VVS+GSL LDIALG+GG P+GRI+
Sbjct: 4   NKNKALTAALAQIEKQYGKGSIMRLGD-SDVAKDIQVVSTGSLSLDIALGVGGLPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA+K+GV+++ LLISQPD G
Sbjct: 63  EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDPQYAQKIGVNVQELLISQPDNG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSG+VDI+VIDSVAALTPRAEIEG+MGE   G+QARLMSQALRKLT++I
Sbjct: 123 EQALEITDMLVRSGSVDIVVIDSVAALTPRAEIEGEMGEPQMGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+   ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK  + I GN+T
Sbjct: 183 KRTNTTVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKRGEEIVGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ +F I+YGEGIS   E+I+LGV   +++K+GAW+S+ G+++GQGR
Sbjct: 243 RVKVVKNKVAPPFKQADFAILYGEGISRESEIIELGVLHKLIEKAGAWYSYNGEKIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           +N + +L+E+ ++A  IE  +R    L   +    P   ++
Sbjct: 303 DNVRDYLKEHKDLAHEIEQKIRAAVDLAETNNRTVPPSPSE 343


>gi|260437155|ref|ZP_05790971.1| protein RecA [Butyrivibrio crossotus DSM 2876]
 gi|292810467|gb|EFF69672.1| protein RecA [Butyrivibrio crossotus DSM 2876]
          Length = 343

 Score =  378 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 211/346 (60%), Positives = 279/346 (80%), Gaps = 3/346 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   DK +AL+AALS I+R +GKGA+M+LG   +    +E V +GSL LDIALG+GG PK
Sbjct: 1   MAKEDKLRALDAALSSIERSFGKGAVMKLGDPAAAMN-VETVPTGSLSLDIALGMGGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YAR +GV++  L ISQ
Sbjct: 60  GRIVEIYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYARNIGVNIDELYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT+ LVRSGAVDII++DSVAAL P+AEI+GDMG+S  G+QARLMSQALRKL
Sbjct: 120 PDNGEQALEITETLVRSGAVDIIIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+ IS++ CI++FINQ+R K+GVMFG+PETTTGG ALKFYSS+R+D+RR+ S+K    + 
Sbjct: 180 TAVISKTNCIVIFINQLREKVGVMFGNPETTTGGRALKFYSSIRMDVRRIESLKANGEVV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PF++ EFDIM+G+GIS  G+++DLGV +++V KSGAWF++ G ++
Sbjct: 240 GNRTRVKVVKNKIAPPFREAEFDIMFGKGISREGDILDLGVTSNVVQKSGAWFAYNGDKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GQGREN+KI+L E+ +I E IE  +R++  +  D   ++  + T++
Sbjct: 300 GQGRENAKIYLSEHPDIMEEIEQKVREHFAV--DVSHEDETVTTEE 343


>gi|326203615|ref|ZP_08193479.1| recA protein [Clostridium papyrosolvens DSM 2782]
 gi|325986435|gb|EGD47267.1| recA protein [Clostridium papyrosolvens DSM 2782]
          Length = 348

 Score =  378 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 212/352 (60%), Positives = 281/352 (79%), Gaps = 4/352 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           +++K KALE AL QI++ +GKGA+M+LG    +   IE + +GS+ LD+ALG+GG P+GR
Sbjct: 1   MLEKKKALEMALGQIEKQFGKGAVMKLGENSHM--NIESIPTGSMSLDLALGVGGVPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVE++GPESSGKTT+ALH IA++QK GG  AF+DAEHALD +YA+KLGVD++NL++SQPD
Sbjct: 59  IVEVFGPESSGKTTVALHIIAEAQKAGGEAAFIDAEHALDPVYAKKLGVDIENLIVSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEIT+ LVRSGA+DIIVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL  
Sbjct: 119 TGEQALEITEALVRSGAIDIIVIDSVAALVPKAEIDGEMGDSHIGLQARLMSQALRKLAG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            IS+S+   +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+RR+ +IK  + + GN
Sbjct: 179 VISKSRTTAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRRIEAIKQANEVVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFK+ EFDI+YG+GIS  G ++D+ V   IV+KSGAWFS+ GQR+GQ
Sbjct: 239 RTRVKVVKNKVAPPFKEAEFDIVYGQGISREGSILDIAVSMEIVNKSGAWFSYNGQRIGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           GREN+K +L+EN  +   IE L+R N   V  ++ +    + ++D   D+ +
Sbjct: 299 GRENAKQYLKENSAMCSEIEKLIRNNF--VVTAVPENEGASEEEDNSLDEIE 348


>gi|227495813|ref|ZP_03926124.1| recombination protein A [Actinomyces urogenitalis DSM 15434]
 gi|226834635|gb|EEH67018.1| recombination protein A [Actinomyces urogenitalis DSM 15434]
          Length = 399

 Score =  378 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 204/329 (62%), Positives = 263/329 (79%), Gaps = 2/329 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+SKAL  ALSQI + +GKG++M+LG        + V+ +GS+ LD+ALG+GG P+GR
Sbjct: 6   TQDRSKALATALSQIDKAFGKGSVMRLGDDTR--PPVSVIPTGSIALDVALGVGGLPRGR 63

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTT+ALH +A +QK GG  AF+DAEHALD +YA+ LGVD  NLL+SQPD
Sbjct: 64  IIEIYGPESSGKTTVALHAVASAQKAGGNAAFIDAEHALDPVYAKALGVDTDNLLVSQPD 123

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DML+RSG +DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T 
Sbjct: 124 TGEQALEIADMLIRSGGLDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITG 183

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           ++S +    +FINQ+R KIGV FG+PETTTGG ALKFY+SVR+D+RR+ ++KD D   GN
Sbjct: 184 ALSATGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRIDVRRIQTLKDGDQPVGN 243

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TR KVVKNKMA PFKQ EFDI+YG+GIS  G L+D+GV+  IV KSGAWF++   +LGQ
Sbjct: 244 RTRAKVVKNKMAPPFKQAEFDIVYGQGISREGSLLDMGVENGIVRKSGAWFTYGTDQLGQ 303

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGL 337
           G+EN++ FL++N E+A+ IE+ +    G+
Sbjct: 304 GKENARTFLKDNPELADEIENKILAALGI 332


>gi|86138307|ref|ZP_01056881.1| recombinase A [Roseobacter sp. MED193]
 gi|85824832|gb|EAQ45033.1| recombinase A [Roseobacter sp. MED193]
          Length = 354

 Score =  378 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 241/354 (68%), Positives = 286/354 (80%), Gaps = 11/354 (3%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K     DK KAL++AL+QI+R +GKG+IM++G      + IE  S+GSLGLDIALGIGG 
Sbjct: 8   KNKVSGDKQKALDSALAQIERQFGKGSIMKMGD--GAIQEIEASSTGSLGLDIALGIGGL 65

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P GRI+EIYGPESSGKTTL LH  A+ QK GG CAFVDAEHALD  YA KLGVDL  LLI
Sbjct: 66  PMGRIIEIYGPESSGKTTLTLHCAAEQQKKGGVCAFVDAEHALDPQYAAKLGVDLDELLI 125

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEITD LVRSGAV+++++DSVAALTP++E+EGDMG+S  G+QARLMSQA+R
Sbjct: 126 SQPDTGEQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSNVGVQARLMSQAMR 185

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++KD+D 
Sbjct: 186 KLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKDRDE 245

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           I GN TRVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGV A +V+KSG+WFS+  +
Sbjct: 246 IVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVAAGVVNKSGSWFSYGDE 305

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           R+GQGREN+K FLR++  IA +IE  +R   GL  D           D  D+DD
Sbjct: 306 RIGQGRENAKQFLRDHQSIAYDIEDKIRAAHGLEFDR---------PDGGDEDD 350


>gi|289208783|ref|YP_003460849.1| recA protein [Thioalkalivibrio sp. K90mix]
 gi|288944414|gb|ADC72113.1| recA protein [Thioalkalivibrio sp. K90mix]
          Length = 348

 Score =  378 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 217/345 (62%), Positives = 284/345 (82%), Gaps = 4/345 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL AAL QI+R +GKGA+M++G Q ++   +  +S+GSL LDIALGIGG P+GR+V
Sbjct: 4   NRKKALTAALGQIERQFGKGAVMRMGDQQAV--DVPAISTGSLALDIALGIGGVPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  +A++QK GGT AFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVVAEAQKLGGTAAFVDAEHALDPTYAEKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGAVD++++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 122 EQALEIADMLVRSGAVDVVIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVR+DIRR+G+IK  D + GN+T
Sbjct: 182 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRMDIRRIGAIKKGDEVIGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PF++  F+I+YGEGIS  GE+I++GVK  ++DK+GAW+S+ G+R+GQG+
Sbjct: 242 RVKVVKNKMAPPFREAYFEILYGEGISRVGEIIEMGVKEGLIDKAGAWYSYNGERIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS--LLQEPAINTKDD 353
           EN++ +L++N +IAE +E  LR+      +   +  EP     ++
Sbjct: 302 ENARQYLKDNPQIAEEVEKTLRERLLPKRNKAAVEDEPVDAPVEE 346


>gi|254284267|ref|ZP_04959235.1| protein RecA [gamma proteobacterium NOR51-B]
 gi|219680470|gb|EED36819.1| protein RecA [gamma proteobacterium NOR51-B]
          Length = 354

 Score =  378 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 221/354 (62%), Positives = 282/354 (79%), Gaps = 2/354 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL+AALSQI+R +GKG +M++G Q  +   I  +S+GSLGLDIALGIGG PKGRI
Sbjct: 3   PNKQKALDAALSQIERQFGKGTVMRMGDQERV--AIPSISTGSLGLDIALGIGGLPKGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
            EIYGPESSGKTTL L  IA++QK GGT AFVDAEHALD  YA KLGV + +L++SQPDT
Sbjct: 61  CEIYGPESSGKTTLTLQVIAEAQKAGGTAAFVDAEHALDPQYAEKLGVQVDDLIMSQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALE+++MLVRSGAVD++VIDSVAALTP+AEIEG+MG+S  G+QARL+SQA+RKLT +
Sbjct: 121 GEQALEVSEMLVRSGAVDVLVIDSVAALTPKAEIEGEMGDSHVGLQARLLSQAMRKLTGA 180

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++KD D + GN+
Sbjct: 181 IKQTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKDGDEVIGNE 240

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EF IMYG GI   GE+ID GVK ++VDKSGAW+++KG ++GQG
Sbjct: 241 TRVKVVKNKVSPPFKQAEFQIMYGAGIYRLGEVIDWGVKLNLVDKSGAWYAYKGDKIGQG 300

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           + N+  FL+EN  I + IE+ +R     V  +++ E       + +  +    E
Sbjct: 301 KANAARFLQENPRIGDEIENQIRHQMMGVPLAVVPESESEDAGEVETKEAAAGE 354


>gi|150171050|emb|CAO01508.1| DNA recombination protein [Burkholderia seminalis]
          Length = 333

 Score =  378 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 224/324 (69%), Positives = 281/324 (86%), Gaps = 1/324 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGP
Sbjct: 1   LAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALE
Sbjct: 60  ESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           ITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C
Sbjct: 120 ITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNC 179

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVV
Sbjct: 180 LVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVV 239

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ 
Sbjct: 240 KNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNARE 299

Query: 316 FLRENIEIAENIESLLRQNAGLVA 339
           FLREN EIA  IE+ +R++ G+ +
Sbjct: 300 FLRENPEIAREIENRIRESLGVAS 323


>gi|228992467|ref|ZP_04152395.1| hypothetical protein bpmyx0001_32080 [Bacillus pseudomycoides DSM
           12442]
 gi|228767288|gb|EEM15923.1| hypothetical protein bpmyx0001_32080 [Bacillus pseudomycoides DSM
           12442]
          Length = 341

 Score =  378 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 201/333 (60%), Positives = 266/333 (79%), Gaps = 2/333 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG Q      I  + SGSL LD+ALG+GG+P+GR
Sbjct: 1   MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERR--ISTIPSGSLALDVALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPD
Sbjct: 59  VIEIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQ LEI + LVRSGA+DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQGLEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   +K  + I GN
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK+A PF+  E DIMYGEGIS  GE++D+  +  IV KSGAW+S+  +RLGQ
Sbjct: 239 KTKIKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           GREN+K FL+EN E+ + I   +R++ G+  DS
Sbjct: 299 GRENAKQFLKENPELRDEIAFFIREHHGIGEDS 331


>gi|297539361|ref|YP_003675130.1| recombination protein RecA [Methylotenera sp. 301]
 gi|297258708|gb|ADI30553.1| recA protein [Methylotenera sp. 301]
          Length = 342

 Score =  378 bits (969), Expect = e-103,   Method: Composition-based stats.
 Identities = 223/343 (65%), Positives = 289/343 (84%), Gaps = 4/343 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G+I E I+ VS+GSLGLDIALGIGG P+GR++
Sbjct: 4   NKSKALSAALAQIEKQFGKGSIMRMGD-GNIGEDIQAVSTGSLGLDIALGIGGLPRGRVI 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK+GG  AF+DAEHALD  YA KLGV++ +LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLSVIAQMQKSGGVAAFIDAEHALDPQYAAKLGVNVPDLLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VDI+VIDSVAALTPRAEIEG+MG+S  G+QARLMSQALRKLT +I
Sbjct: 123 EQALEIVDMLVRSGSVDIVVIDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKLTGNI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK  D + G++T
Sbjct: 183 KRTNTMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKKGDEVIGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV+KNK+A PFKQ EFDI+YGEGIS  GE+I+LG    +V+K+G+W+S+ G+++GQG+
Sbjct: 243 RVKVIKNKVAPPFKQAEFDILYGEGISREGEIIELGANLKMVEKAGSWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           +N++ FLR N  IA  I++ +R N   +++++   PA+ +++D
Sbjct: 303 DNAREFLRSNPAIANEIDAKIRANMKSLSEAM---PAVRSEED 342


>gi|91774925|ref|YP_544681.1| recombinase A [Methylobacillus flagellatus KT]
 gi|123254792|sp|Q1H3U7|RECA_METFK RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|91708912|gb|ABE48840.1| RecA protein [Methylobacillus flagellatus KT]
          Length = 344

 Score =  378 bits (969), Expect = e-103,   Method: Composition-based stats.
 Identities = 223/342 (65%), Positives = 290/342 (84%), Gaps = 1/342 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++SKAL AALSQI++ +GKG+IM++G    +   I+ VS+GSLGLDIALGIGG P+GRIV
Sbjct: 4   NRSKALAAALSQIEKQFGKGSIMRMGD-TDVAADIQAVSTGSLGLDIALGIGGLPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK GGT AF+DAEHALD +YA+KLGV++ +LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLSVIAQMQKLGGTAAFIDAEHALDPVYAQKLGVNVSDLLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VD++V+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 123 EQALEIADMLVRSGSVDVVVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK  D +TG++T
Sbjct: 183 KRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKKGDEVTGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDI+YGEGIS  GE+I+LGV   +++K+GAW+S+KG+++GQG+
Sbjct: 243 RVKVVKNKVAPPFKQAEFDILYGEGISREGEIIELGVNLKLIEKAGAWYSYKGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           +N++ FLRE+ EIA  I++ +R+++ L   ++   P   + +
Sbjct: 303 DNAREFLREHPEIANEIDAKIREHSNLANAAMTTAPDEESDE 344


>gi|258545021|ref|ZP_05705255.1| recombinase A [Cardiobacterium hominis ATCC 15826]
 gi|258519719|gb|EEV88578.1| recombinase A [Cardiobacterium hominis ATCC 15826]
          Length = 363

 Score =  378 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 217/349 (62%), Positives = 280/349 (80%), Gaps = 2/349 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+A L+Q+ + +GKG +M+LG Q +    I+ +S+GSLGLDIALGIGG P+GRIV
Sbjct: 8   EQEKALKAVLAQLDKQFGKGTVMRLGDQTTEH-DIQAISTGSLGLDIALGIGGLPRGRIV 66

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA++QK GGT AF+DAEHALD IYARKLGV+  +L I+QPDTG
Sbjct: 67  EIYGPESSGKTTLTLHVIAEAQKAGGTAAFIDAEHALDPIYARKLGVNTDDLYITQPDTG 126

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGA  +IVIDSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 127 EQALEIADALVRSGAFSVIVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 186

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+ D + GNQT
Sbjct: 187 KRANTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEGDEVLGNQT 246

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFD++YG+GIS  GE+IDLGV   ++ KSGAW+S+   ++GQG+
Sbjct: 247 RVKVVKNKVSPPFKQAEFDVLYGQGISRIGEIIDLGVAIDVIQKSGAWYSYGSDKIGQGK 306

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           E  + +L E  E+A  IE+ +R++  +         + ++ DDA+  + 
Sbjct: 307 EKVRAYLTEKPELAAEIEAKIREHY-IGNAHAELPVSKDSGDDAEASEA 354


>gi|197259606|gb|ACH56444.1| RecA type I [Propionibacterium acnes]
          Length = 348

 Score =  378 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 209/344 (60%), Positives = 266/344 (77%), Gaps = 2/344 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+ KAL  AL QI++ +GKG+IM+LG Q ++   I  + +GS+ LD+ALG+GG P+GR
Sbjct: 4   TADREKALATALQQIEKQHGKGSIMRLGEQETV--KIAAIPTGSVALDVALGVGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEIYGPESSGKTT+ALH IA +Q  GG CAF+DAEHALD  YARKLGVD  +LL+SQPD
Sbjct: 62  IVEIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPEYARKLGVDTDSLLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GEQALEI D LVRSGA+++IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T 
Sbjct: 122 NGEQALEIADTLVRSGALELIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +++ +    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RRV ++KD   + GN
Sbjct: 182 ALNAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRVETLKDGSEMVGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKV KNK+A PFKQ EFDI+YG+GIS  G LID+GV   I+ KSG+WFS+  ++LGQ
Sbjct: 242 RTRVKVAKNKVAPPFKQAEFDILYGQGISREGSLIDMGVDCGIIIKSGSWFSYNNEQLGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           G+EN + FLR N ++A  IE  +  + GL    + +     T +
Sbjct: 302 GKENVRKFLRGNPDVANEIEDKILTHLGLREAEVPEGVDPRTGE 345


>gi|149190611|ref|ZP_01868880.1| recombinase A [Vibrio shilonii AK1]
 gi|148835609|gb|EDL52577.1| recombinase A [Vibrio shilonii AK1]
          Length = 345

 Score =  378 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 214/343 (62%), Positives = 275/343 (80%), Gaps = 2/343 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +QK G TCAF+DAEHALD IYA+KLGVD+ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPIYAKKLGVDIDSLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ E  I+YG+G + +GELIDLGVK  +V+K+GAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKQAETQILYGQGFNRYGELIDLGVKHKLVEKAGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
            N+  FLREN E A+ I++ LR+     A     E      ++
Sbjct: 302 ANACKFLRENPEAAQTIDAKLREMLLTPALEEAPEQGEAPAEE 344


>gi|229000603|ref|ZP_04160143.1| hypothetical protein bmyco0003_51360 [Bacillus mycoides Rock3-17]
 gi|229006025|ref|ZP_04163714.1| hypothetical protein bmyco0002_29460 [Bacillus mycoides Rock1-4]
 gi|228755224|gb|EEM04580.1| hypothetical protein bmyco0002_29460 [Bacillus mycoides Rock1-4]
 gi|228759158|gb|EEM08164.1| hypothetical protein bmyco0003_51360 [Bacillus mycoides Rock3-17]
          Length = 341

 Score =  378 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 200/333 (60%), Positives = 266/333 (79%), Gaps = 2/333 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG Q      I  + SGSL LD+ALG+GG+P+GR
Sbjct: 1   MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERR--ISTIPSGSLALDVALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPD
Sbjct: 59  VIEIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQ LEI + LVRSGA+DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQGLEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   +K  + I GN
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK+A PF+  E DIMYGEGIS  GE++D+  +  IV KSGAW+S+  +RLGQ
Sbjct: 239 KTKIKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           GREN+K FL+EN E+ + I   +R++ G+  D+
Sbjct: 299 GRENAKQFLKENPELRDEIAFFIREHHGIGEDA 331


>gi|132227|sp|P18076|RECA_METFL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|95271|pir||JQ0776 recombination protein recA - Methylobacillus sp
 gi|150030|gb|AAA25386.1| RecA protein [Methylobacillus flagellatus]
          Length = 344

 Score =  378 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 220/342 (64%), Positives = 288/342 (84%), Gaps = 1/342 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++SKAL AALSQI++ +GKG+IM++G    +   I+ VS+GSLGLDIALGIGG P+GRIV
Sbjct: 4   NRSKALAAALSQIEKQFGKGSIMRMGD-TDVAADIQAVSTGSLGLDIALGIGGLPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK GGT AF+DAEHALD +YA+KLGV++ +LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLSVIAQMQKLGGTAAFIDAEHALDPVYAQKLGVNVSDLLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VD++V+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 123 EQALEIADMLVRSGSVDVVVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+  +++FINQ+RMKIG+MFG+PETTTGGNALKFY+SVRLDIRR G+IK  D +TG++T
Sbjct: 183 KRTNTLVIFINQIRMKIGLMFGNPETTTGGNALKFYASVRLDIRRTGAIKKGDEVTGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKN +A PFK  EFDI+YGEGIS  GE+I+LGV   +++K+GAW+S+KG+++GQG+
Sbjct: 243 RVKVVKNNVAPPFKLAEFDILYGEGISREGEIIELGVNLKLIEKAGAWYSYKGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           +N++ FLRE+ EIA  I++ +R+++ L   ++   P   + +
Sbjct: 303 DNAREFLREHPEIANEIDAKIREHSNLANAAMTTAPDEESDE 344


>gi|163746279|ref|ZP_02153637.1| recombinase A [Oceanibulbus indolifex HEL-45]
 gi|161380164|gb|EDQ04575.1| recombinase A [Oceanibulbus indolifex HEL-45]
          Length = 356

 Score =  378 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 241/355 (67%), Positives = 296/355 (83%), Gaps = 11/355 (3%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD +K     +K KAL++AL+QI+R +GKG+IM+LG++G++ + I   S+GSLGLDIALG
Sbjct: 9   MDSKK---TAEKQKALDSALAQIERQFGKGSIMKLGAEGAV-QDIRASSTGSLGLDIALG 64

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG P GRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YA+KLGVD+ 
Sbjct: 65  IGGLPMGRIIEIYGPESSGKTTLTLHCVAEQQKAGGVCAFVDAEHALDPQYAKKLGVDID 124

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LLISQPDTGEQALEITD LVRSGAV+++++DSVAALTP++E+EG+MG+S  G+QARLMS
Sbjct: 125 ELLISQPDTGEQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGEMGDSSVGVQARLMS 184

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKLT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++K
Sbjct: 185 QAMRKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGALK 244

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D+D + GN T+VKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGVKA +VDKSG+WFS
Sbjct: 245 DRDEVVGNATKVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVKAGVVDKSGSWFS 304

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           +  +R+GQGREN+K FL+EN  +A  IE  +R   GL       + A   +DDAD
Sbjct: 305 YGDERIGQGRENAKNFLKENTAMAAEIEDKIRAAHGL-------DSAGPGRDDAD 352


>gi|295108291|emb|CBL22244.1| protein RecA [Ruminococcus obeum A2-162]
          Length = 347

 Score =  378 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 214/351 (60%), Positives = 275/351 (78%), Gaps = 4/351 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K KALEAAL  I++ YGKG++M+LG   S    +E V +GSLGLDIALG+GG PK
Sbjct: 1   MMNEEKQKALEAALGHIEKQYGKGSVMKLGDSSSNMV-VEAVPTGSLGLDIALGVGGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YA+ +GVD+ NL ISQ
Sbjct: 60  GRIVEIYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEIEGDMG+S  G+ ARLMSQALRKL
Sbjct: 120 PDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIEGDMGDSHVGLHARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T++ISRS C+++FINQ+R K+GVMFG+PETTTGG ALKFY+SVRLD+RR  ++K    + 
Sbjct: 180 TAAISRSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASVRLDVRRTETLKQGGEMV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN  +VKVVKNK+A PFKQ EFDIM+G GIS  GE++DL  + ++V+KSGAW+S+ G R+
Sbjct: 240 GNHVKVKVVKNKVAPPFKQAEFDIMFGTGISREGEILDLAAECNVVNKSGAWYSYNGDRI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           GQGREN KIFL+++ +I E IE  +R    L+     +EP    +D  +++
Sbjct: 300 GQGRENVKIFLKDHPDICEEIEKKVRIQYHLLPG---EEPENAEQDGEEQE 347


>gi|224369826|ref|YP_002603990.1| RecA [Desulfobacterium autotrophicum HRM2]
 gi|259563332|sp|C0QI90|RECA_DESAH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|223692543|gb|ACN15826.1| RecA [Desulfobacterium autotrophicum HRM2]
          Length = 347

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 212/344 (61%), Positives = 280/344 (81%), Gaps = 2/344 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
            + +K KA++ A+ QI+R +GKG+IM+LG      + + ++S+GSL LD ALG+GGFP+G
Sbjct: 3   ELTEKDKAIQTAMGQIERQFGKGSIMKLG--AREIQAVPIISTGSLALDKALGVGGFPRG 60

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R++EIYGPESSGKTTLALH +A++Q+ GG  AF+DAEHALD  YAR+LGV+   LL+SQP
Sbjct: 61  RVIEIYGPESSGKTTLALHAVAEAQRQGGIAAFIDAEHALDVAYARRLGVNCDELLVSQP 120

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI DMLVRSGAVDII++DSVAAL PRAEIEGDMG+S  G+QARLMSQALRKLT
Sbjct: 121 DTGEQALEIVDMLVRSGAVDIIIVDSVAALVPRAEIEGDMGDSHMGLQARLMSQALRKLT 180

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           ++I ++   L+FINQ+RMKIGV++G+PETTTGGNALKFY+SVR++IR+  +IKD ++I G
Sbjct: 181 ATIGKTHTTLIFINQIRMKIGVVYGNPETTTGGNALKFYASVRIEIRKATAIKDGENILG 240

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+T+VKVVKNK+A PFK +EFD+MYGEGIS  GEL+D+GV   IVDKSGAW+S+ G+R+G
Sbjct: 241 NRTKVKVVKNKLAPPFKSIEFDLMYGEGISKTGELLDMGVDMGIVDKSGAWYSYDGERIG 300

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           QGR+N+K+F  +N EI   I++ +R+  GL + +  +      K
Sbjct: 301 QGRQNAKVFFTDNPEIFNQIQARVREALGLSSPTPKENGKEKGK 344


>gi|329890680|ref|ZP_08269023.1| protein RecA [Brevundimonas diminuta ATCC 11568]
 gi|328845981|gb|EGF95545.1| protein RecA [Brevundimonas diminuta ATCC 11568]
          Length = 351

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 237/350 (67%), Positives = 294/350 (84%), Gaps = 1/350 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
               DK +ALEAA++QI R +GKG++M+LG  G + E IE VS+GSLGLD+ALGIGG P 
Sbjct: 3   KEDGDKQRALEAAIAQIDRAFGKGSVMKLGKAGQVAE-IESVSTGSLGLDMALGIGGLPV 61

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++E++GPESSGKTTLALHT+A+ QK GG  AFVDAEHALD +YA+KLGV+L +LL+SQ
Sbjct: 62  GRVIEVFGPESSGKTTLALHTVAEVQKKGGVAAFVDAEHALDPVYAQKLGVNLDDLLVSQ 121

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI D LVRSGAVDI+V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKL
Sbjct: 122 PDAGEQALEIVDTLVRSGAVDIVVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKL 181

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+SIS+SKCI++FINQ+R KIGVM+GSPETTTGGNALKFY+SVRLDIRR G+IK++D + 
Sbjct: 182 TASISKSKCIVLFINQIRHKIGVMYGSPETTTGGNALKFYASVRLDIRRTGAIKNRDEVV 241

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN TRVKVVKNK+A PF++V FDIMYGEGIS  GE+IDLGVKA+I++KSG+WFS+   R+
Sbjct: 242 GNTTRVKVVKNKVAPPFREVIFDIMYGEGISKIGEIIDLGVKANIIEKSGSWFSYDSTRI 301

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           GQGREN+K FL+ N ++A  IE  +RQ+   +AD +L  P  +   D + 
Sbjct: 302 GQGRENAKEFLKNNPDMALAIEKAVRQSTAKIADDMLGAPEPDEGQDLEG 351


>gi|330446964|ref|ZP_08310615.1| protein RecA [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491155|dbj|GAA05112.1| protein RecA [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 350

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 216/350 (61%), Positives = 280/350 (80%), Gaps = 5/350 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L TIA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLETIAAAQRKGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ +  I+YG+G +  GEL+DLGVK  +V+K+GAW+S+KG ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKQADTQILYGQGFNRNGELVDLGVKHKLVEKAGAWYSYKGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
            N+  FL EN E A  IE+ LR+   L+   + +      +D+ D ++ +
Sbjct: 302 ANACKFLTENPETAAEIEAKLRE---LLLSPVTEGETSEAQDNMDIEEDE 348


>gi|331085030|ref|ZP_08334117.1| recA [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330408730|gb|EGG88195.1| recA [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 347

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 202/348 (58%), Positives = 271/348 (77%), Gaps = 1/348 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   DK KAL+AA++++++ +GKGA+M+LG   +    +E V +GSL LDIALG+GG PK
Sbjct: 1   MAGDDKLKALDAAIAKLEKDFGKGAVMKLGDAAANV-SVETVPTGSLSLDIALGLGGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTT+ALH IA+ QK GG   F+DAEHALD +YA+ +GVD+  L ISQ
Sbjct: 60  GRIIEIYGPESSGKTTVALHMIAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDELYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+G+QALEIT+ +VRSGA+DIIV+DSVAAL PR EIEGDMG+S  G+QARLMSQALRKL
Sbjct: 120 PDSGDQALEITETMVRSGAMDIIVVDSVAALVPRQEIEGDMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T  IS+S C+++FINQ+R K+GVMFG+PETTTGG ALKFY+S+R+D+RR  ++K    + 
Sbjct: 180 TPVISKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASIRMDVRRTETLKQGGEMV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR+KVVKNK+A PFK+ EFDIM+G+GIS  G+++DL     I++KSGAW+++ G ++
Sbjct: 240 GNRTRIKVVKNKIAPPFKEAEFDIMFGKGISKEGDILDLAAGLDIINKSGAWYAYNGDKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           GQGREN+K +L  + E+ E IE+ +R +  L   +  +E     K D 
Sbjct: 300 GQGRENAKTYLSTHPEVMEEIETKVRAHYKLDGAAGEEELVAEQKADE 347


>gi|229916160|ref|YP_002884806.1| recA protein [Exiguobacterium sp. AT1b]
 gi|259563336|sp|C4L2V3|RECA_EXISA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|229467589|gb|ACQ69361.1| recA protein [Exiguobacterium sp. AT1b]
          Length = 349

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 205/346 (59%), Positives = 269/346 (77%), Gaps = 5/346 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+ +ALE AL QI++ +GKG+IM+LG      + + V+ SGS+ LD+ALG GG+P+GR
Sbjct: 1   MSDRKQALEMALRQIEKQFGKGSIMRLGENTD--QQVSVIPSGSIALDVALGAGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++E+YGPESSGKTT+ALH IA+ QK GG  AFVDAEHALD  YA+ LGV++  LL+SQPD
Sbjct: 59  VIEVYGPESSGKTTVALHAIAEVQKRGGQAAFVDAEHALDPKYAKNLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDI+V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDILVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           + ++SK I++FINQ+R KIG+MFG+PETT GG ALKFYSSVRL++RR  ++K    + GN
Sbjct: 179 ATNKSKTIVIFINQIREKIGIMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGQDMVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++K+VKNK+A PFK  E DIMYGEGIS  GELID+G    IV KSGAW+SF  +RLGQ
Sbjct: 239 RTKIKIVKNKIAPPFKTAEVDIMYGEGISREGELIDIGADLDIVQKSGAWYSFNEERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           GREN+K +++EN  IA  +E  +R + GL  +  +    +  +DD 
Sbjct: 299 GRENAKQYMKENPAIAAEVEQQIRDHYGLNGEKTV---TVEGEDDE 341


>gi|70904915|gb|AAZ14035.1| RecA [Burkholderia ambifaria]
          Length = 328

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 224/323 (69%), Positives = 281/323 (86%), Gaps = 1/323 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
            AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPE
Sbjct: 2   AAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPE 60

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEI
Sbjct: 61  SSGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEI 120

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+
Sbjct: 121 TDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCL 180

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVK
Sbjct: 181 VIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVK 240

Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316
           NK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ F
Sbjct: 241 NKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREF 300

Query: 317 LRENIEIAENIESLLRQNAGLVA 339
           LREN EIA  IE+ +R++ G+V 
Sbjct: 301 LRENPEIAREIENRIRESLGVVT 323


>gi|253573598|ref|ZP_04850941.1| recA protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251847126|gb|EES75131.1| recA protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 353

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 217/348 (62%), Positives = 274/348 (78%), Gaps = 2/348 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  ALE AL QI++ +GKG+IM+LG    +   +E+V SGS+ LDIALG GG P+GR
Sbjct: 1   MSDRKAALEMALRQIEKQFGKGSIMKLGESTHM--QVEIVPSGSIALDIALGTGGLPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD  YA KLGV++  LL+SQPD
Sbjct: 59  IIEVYGPESSGKTTVALHAIAEVQKIGGQAAFIDAEHALDPSYASKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +IS+SK I +FINQ+R K+GVMFG+PETT GG ALKFYS++RLD+RRV +IK  + + GN
Sbjct: 179 AISKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTIRLDVRRVETIKMGNDMVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TR+KVVKNK+A PFKQ E DIMYGEGIS  G +IDLG +  IVDKSGAW+S+ G+RLGQ
Sbjct: 239 RTRIKVVKNKVAPPFKQAEIDIMYGEGISKEGSIIDLGTELDIVDKSGAWYSYAGERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           GREN+K FL+E+ EIA  IE  +R+++ L         +    + A++
Sbjct: 299 GRENAKQFLKEHPEIANAIEQKIRESSNLTTSVASASASELEAEFAEE 346


>gi|229061382|ref|ZP_04198728.1| hypothetical protein bcere0026_34690 [Bacillus cereus AH603]
 gi|228717921|gb|EEL69567.1| hypothetical protein bcere0026_34690 [Bacillus cereus AH603]
          Length = 343

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 206/345 (59%), Positives = 274/345 (79%), Gaps = 2/345 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG Q      I  +SSGSL LD+ALG+GG+P+GR
Sbjct: 1   MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERR--ISTISSGSLALDVALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPD
Sbjct: 59  VIEIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   +K  + I GN
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK+A PF+  E DIMYGEGIS  GE++D+  +  IV KSGAW+S+  +RLGQ
Sbjct: 239 KTKIKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           GRENSK FL+EN ++ E I   +R++ G+  +S +++   +T+ D
Sbjct: 299 GRENSKQFLKENTDLREEIAFFVREHHGIGENSGVEDTEDSTRQD 343


>gi|28210974|ref|NP_781918.1| recombinase A [Clostridium tetani E88]
 gi|37537945|sp|Q895I5|RECA_CLOTE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|28203413|gb|AAO35855.1| recA protein [Clostridium tetani E88]
          Length = 350

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 211/327 (64%), Positives = 265/327 (81%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KA+EAA+  I++ +GKG++M+LG +  +   IE +S+G LG+DIALGIGG PKGRIV
Sbjct: 4   EKLKAIEAAMGNIEKQFGKGSVMKLGEKNIL--DIEAISTGCLGMDIALGIGGVPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA++QK GG  AF+DAEHALD  YARKLGVD+ NL++SQPDTG
Sbjct: 62  EIYGPESSGKTTVALHIIAEAQKNGGVAAFIDAEHALDPSYARKLGVDIDNLIVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI + LVRS A+DI+V+DSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL  SI
Sbjct: 122 EQGLEIAEALVRSNAIDIVVVDSVAALVPKAEIQGEMGDSHVGLQARLMSQALRKLAGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++S C+ +FINQ+R K+G+MFGSPETT GG ALKFYSSVRLD+RR+ +IK  D   GN+T
Sbjct: 182 NKSNCVAIFINQLREKVGIMFGSPETTPGGRALKFYSSVRLDVRRIDTIKQGDEFLGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV KNK+A PFK  EFDIMY EGIS  G+++DLGVK  IV KSG+WFS+   RLGQGR
Sbjct: 242 RVKVTKNKVAPPFKNAEFDIMYNEGISRTGDVLDLGVKEEIVQKSGSWFSYNDVRLGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN+K FL++N E+   IE+ +R+   L
Sbjct: 302 ENAKQFLKDNPELLYEIENTIREKYDL 328


>gi|205373469|ref|ZP_03226272.1| recombination protein A [Bacillus coahuilensis m4-4]
          Length = 345

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 207/337 (61%), Positives = 266/337 (78%), Gaps = 2/337 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL QI++ +GKG+IM+LG Q      I  +SSGS+ LD ALG+GG+P+GRIV
Sbjct: 4   DRQAALDMALKQIEKQFGKGSIMKLGEQQD--RKISTISSGSVTLDTALGVGGYPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ Q  GG  AF+DAEHALD +YA+KLGV++  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTVALHAIAEVQAQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDI+VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I
Sbjct: 122 EQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR  ++K  + + GN+T
Sbjct: 182 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMVGNKT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYGEGIS  GE+IDLG    IV KSG+W+S+  +RLGQGR
Sbjct: 242 KIKVVKNKVAPPFRVAEVDIMYGEGISKEGEIIDLGSDLDIVQKSGSWYSYNEERLGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           EN+K FL+EN +I + I   +R++ GL    + +   
Sbjct: 302 ENAKQFLKENPDIRQEILLKIREHYGLDDVQVEESDE 338


>gi|315658425|ref|ZP_07911297.1| recombination protein A [Staphylococcus lugdunensis M23590]
 gi|315496754|gb|EFU85077.1| recombination protein A [Staphylococcus lugdunensis M23590]
          Length = 367

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 203/347 (58%), Positives = 265/347 (76%), Gaps = 2/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+  +  +++ +GKGA+M+LG        +  VS+GS+ LD ALG+GG+PKGRI+
Sbjct: 23  DRQKALDTVIKNMEKSFGKGAVMKLGDNKGRR--VSSVSTGSVTLDNALGVGGYPKGRII 80

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD  YA  LGVD+ NL +SQPD G
Sbjct: 81  EIYGPESSGKTTVALHAIAEVQKNGGIAAFIDAEHALDPEYAAALGVDIDNLYLSQPDHG 140

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI +  VRSGAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 141 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 200

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S    +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T
Sbjct: 201 SKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRT 260

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G R+GQG+
Sbjct: 261 KIKVVKNKVAPPFKVAEVDIMYGQGISKEGELIDLGVEHDIVDKSGAWYSYNGDRMGQGK 320

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           EN K +L+EN E+ ++I+  LR+  G+    + ++ A   +   D++
Sbjct: 321 ENVKTYLKENPEVRDDIDRKLREKLGIFDGDVEEKEAKAPESLFDEE 367


>gi|257454120|ref|ZP_05619393.1| protein RecA [Enhydrobacter aerosaccus SK60]
 gi|257448448|gb|EEV23418.1| protein RecA [Enhydrobacter aerosaccus SK60]
          Length = 351

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 225/347 (64%), Positives = 279/347 (80%), Gaps = 2/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K+KAL AALSQI++ +GK  IM+LG + +    ++VVS+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKAKALTAALSQIEKQFGKNTIMRLGDESAKIN-VDVVSTGSLGLDIALGIGGLPKGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK GGTCAF+DAEHALD IYA+KLGVD+  LL++QPD G
Sbjct: 63  EIYGPESSGKTTLTLQAIAQCQKQGGTCAFIDAEHALDPIYAKKLGVDVDALLVTQPDNG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSGAVD+IV+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T + 
Sbjct: 123 EQALEITDMLVRSGAVDMIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNA 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C++VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++KD ++I G++T
Sbjct: 183 KRSNCMVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKDGENIVGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV+KNK+A PF+Q EFDIMYG G +  GE++DLGV    V KSGAW+S+   ++GQG+
Sbjct: 243 RVKVIKNKLAPPFRQAEFDIMYGTGTNHLGEVVDLGVDIDAVKKSGAWYSYNDSKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLR-QNAGLVADSLLQEPAINTKDDADK 356
            N+  FL EN +IA+ IE+ +R    G V     +   +   +  + 
Sbjct: 303 ANAIRFLEENPQIAQEIEAKVRAAKLGNVEPVPEEAHDVEPPEFVEG 349


>gi|91792566|ref|YP_562217.1| recombinase A [Shewanella denitrificans OS217]
 gi|122968879|sp|Q12PY2|RECA_SHEDO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|91714568|gb|ABE54494.1| recA protein [Shewanella denitrificans OS217]
          Length = 353

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 218/351 (62%), Positives = 281/351 (80%), Gaps = 4/351 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL A LSQI++ +GKG+IM+LG   ++   +E +S+GSL LD+ALG GG P GRI
Sbjct: 5   PNKEKALAAVLSQIEKQFGKGSIMKLGEDRTM--DVETISTGSLSLDVALGAGGLPMGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDT
Sbjct: 63  VEIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  +
Sbjct: 123 GEQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           + +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+
Sbjct: 183 LKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNE 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A+PFKQ EF I+YG+GI+  GEL+DLGV   +V+K+GAW+S+KG ++GQG
Sbjct: 243 TRVKVVKNKIAAPFKQAEFQILYGQGINRTGELVDLGVAHKLVEKAGAWYSYKGDKIGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           R N+  +L EN  IA+ I++LLR+   L+  +  +E A +  D+ D +  +
Sbjct: 303 RANAGRYLTENPAIAQEIDTLLREM--LLNSNAPKESAADVDDNVDPETGE 351


>gi|308176876|ref|YP_003916282.1| RecA bacterial DNA recombination protein [Arthrobacter arilaitensis
           Re117]
 gi|307744339|emb|CBT75311.1| RecA bacterial DNA recombination protein [Arthrobacter arilaitensis
           Re117]
          Length = 350

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 211/329 (64%), Positives = 263/329 (79%), Gaps = 2/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KALEA L QI + YGKG++M+LG +      IEV+ +GS+ LD+ALGIGG P+GR+V
Sbjct: 6   DREKALEAVLGQIDKAYGKGSVMRLGDETRA--PIEVIPTGSVALDVALGIGGLPRGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +QK GG  AF+DAEHALD  YA+KLGVD   LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVASAQKAGGVAAFIDAEHALDPEYAKKLGVDTDALLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLV SGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T  +
Sbjct: 124 EQALEIMDMLVGSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGRL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S SK   +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+DIRR+ ++K+  +  GN+T
Sbjct: 184 SASKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDIRRIETLKEGTNAVGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R K+VKNKMA PFKQ EFDI+YG GIS  G LID+GV+ ++V KSGAWF++ G +LGQG+
Sbjct: 244 RCKIVKNKMAPPFKQAEFDILYGHGISREGSLIDMGVEHNLVKKSGAWFTYDGDQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           EN++ FLR+N ++A  +E  + Q  G+  
Sbjct: 304 ENARRFLRDNPDLANELERQILQKLGVTP 332


>gi|311278353|ref|YP_003940584.1| recA protein [Enterobacter cloacae SCF1]
 gi|308747548|gb|ADO47300.1| recA protein [Enterobacter cloacae SCF1]
          Length = 352

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 215/351 (61%), Positives = 284/351 (80%), Gaps = 5/351 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+FFGEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFFGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
            N+  +L+EN   A+ IE  +R+   L+ ++    PA    D+   + +++
Sbjct: 304 ANAIAWLKENPAAAKEIEKKVRE---LLLNNQDPTPAFTVDDNDVAETSED 351


>gi|31540549|gb|AAP49237.1| RecA [Mycobacterium gadium]
          Length = 322

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 205/320 (64%), Positives = 264/320 (82%), Gaps = 2/320 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE AL+QI++ +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 5   PDREKALELALAQIEKNHGKGSVMRLGEE--VRQPISVIPTGSIALDVALGIGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 63  IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 123 GEQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +S S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+
Sbjct: 183 LSNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   V KSG+WF+++G++LGQG
Sbjct: 243 TRVKVVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEHGFVRKSGSWFTYEGEQLGQG 302

Query: 310 RENSKIFLRENIEIAENIES 329
           +EN++ FL EN ++A  IE 
Sbjct: 303 KENARNFLLENPDVANEIEK 322


>gi|147673530|ref|YP_001216043.1| recombinase A [Vibrio cholerae O395]
 gi|153802547|ref|ZP_01957133.1| recA protein [Vibrio cholerae MZO-3]
 gi|262169853|ref|ZP_06037543.1| RecA protein [Vibrio cholerae RC27]
 gi|172047730|sp|A5F9B5|RECA_VIBC3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|124121910|gb|EAY40653.1| recA protein [Vibrio cholerae MZO-3]
 gi|146315413|gb|ABQ19952.1| recA protein [Vibrio cholerae O395]
 gi|262021587|gb|EEY40298.1| RecA protein [Vibrio cholerae RC27]
          Length = 354

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 209/345 (60%), Positives = 274/345 (79%), Gaps = 2/345 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTG
Sbjct: 62  EIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            N+  +L+EN EIA+ ++  LR+      +  L     +  DD +
Sbjct: 302 ANACKYLKENPEIAKTLDKKLREMLLNPENMQLTGETASAADDVE 346


>gi|117617987|ref|YP_858164.1| recombinase A [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|166199594|sp|A0KPG3|RECA_AERHH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|117559394|gb|ABK36342.1| recA protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 354

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 222/353 (62%), Positives = 277/353 (78%), Gaps = 2/353 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LD+ALGIGG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDSKTM--DIEAISTGSLSLDVALGIGGLPCGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD IYA KLGV++ +LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS AVD+I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 122 EQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+ +FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+T
Sbjct: 182 KNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF I YG GIS  GEL+DLGVK  ++DK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVAPPFKQAEFQIFYGAGISKEGELVDLGVKHKLIDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N      EN  +A  +E+ LR+     A  +  + A    ++ D +     E
Sbjct: 302 ANVMKLFAENKAMAGEVEARLRELLLSGAVPVDDKAAPVEAEEFDAESEQEFE 354


>gi|119026042|ref|YP_909887.1| recombinase A [Bifidobacterium adolescentis ATCC 15703]
 gi|118765626|dbj|BAF39805.1| protein recA (Recombinase A) [Bifidobacterium adolescentis ATCC
           15703]
          Length = 394

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 208/358 (58%), Positives = 278/358 (77%), Gaps = 6/358 (1%)

Query: 4   RKEMNIVD--KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
            K  N +D  +  AL+ AL+Q+++ +GKG+ M+LG +    + +EV+ +GSL LD+ALGI
Sbjct: 27  NKSANGIDPRRQAALDTALAQVEKSFGKGSAMRLGDRPE--QDVEVIPTGSLALDMALGI 84

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG PKGRIVEIYGPESSGKTTLALH +A +QK GG  AF+DAEHALD +YARKLGVD  +
Sbjct: 85  GGLPKGRIVEIYGPESSGKTTLALHVVANAQKAGGVAAFIDAEHALDPVYARKLGVDTDS 144

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQ
Sbjct: 145 LIVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQ 204

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRK+T +++++    +FINQ+R KIGV FG+PETTTGG ALKFY+SVR+DIRR+ +IK+
Sbjct: 205 ALRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRMDIRRIQTIKN 264

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            D   GN+T+VKVVKNKMA PFK  EFD++YGEGIS  G ++D+ ++A++V KSG+WF++
Sbjct: 265 GDEAVGNRTKVKVVKNKMAPPFKTAEFDVLYGEGISKEGSVLDMALQANVVKKSGSWFTY 324

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLV--ADSLLQEPAINTKDDADKD 357
           +G +LGQGREN + FL++N E+ E IE+ ++   GL+   D   ++        A  D
Sbjct: 325 EGDQLGQGRENVRQFLKDNPELTEEIENKVKAAFGLIKPTDQFAEDDGAEDAAGAPDD 382


>gi|323141085|ref|ZP_08075990.1| RecA protein [Phascolarctobacterium sp. YIT 12067]
 gi|322414461|gb|EFY05275.1| RecA protein [Phascolarctobacterium sp. YIT 12067]
          Length = 350

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 219/346 (63%), Positives = 274/346 (79%), Gaps = 3/346 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            DK KAL+ A+ QI++ +GKG+IM LG   +    IEV+ +G+L LDIALG+GG P+GR+
Sbjct: 3   ADKKKALDMAMHQIEKDFGKGSIMMLGEASAKMN-IEVIPTGALSLDIALGVGGIPRGRV 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH IA++QK GG  AF+DAEHALD  YAR LGVD+ +LLISQPD 
Sbjct: 62  IEIYGPESSGKTTVALHMIAEAQKMGGYAAFIDAEHALDPEYARHLGVDIDDLLISQPDN 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  
Sbjct: 122 GEQALEIADALVRSGAIDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGL 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SKC  +FINQ+R K+GVMFG+PETTTGG ALKFYS+VR+D+RR+ ++K+ + + G++
Sbjct: 182 ISKSKCATIFINQIREKVGVMFGNPETTTGGRALKFYSTVRMDVRRIDTLKNGNDVIGSR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PF+Q EFDIMYG+GIS  G L+DLG    I++KSGAW+S+   RLGQG
Sbjct: 242 TRVKVVKNKVAPPFRQAEFDIMYGKGISHEGCLVDLGADLDIINKSGAWYSYGDIRLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           +E  K FLREN EIA+ IE+ +R  A  +A S  +E A     D +
Sbjct: 302 KEKVKDFLRENPEIAQEIEAKIR--AVTIAKSDNKEAAEEPLQDVE 345


>gi|157326971|gb|ABV44598.1| RecA [Burkholderia multivorans]
          Length = 321

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 225/322 (69%), Positives = 280/322 (86%), Gaps = 1/322 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+ SLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTSSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAG 336
            FLREN EIA  IE+ +R++ G
Sbjct: 300 EFLRENPEIAREIENRIRESLG 321


>gi|311068216|ref|YP_003973139.1| recombinase A [Bacillus atrophaeus 1942]
 gi|310868733|gb|ADP32208.1| recombinase A [Bacillus atrophaeus 1942]
          Length = 347

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 210/338 (62%), Positives = 272/338 (80%), Gaps = 2/338 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG +      I  V SGSL LD ALGIGG+P+GR
Sbjct: 1   MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTR--ISTVPSGSLALDTALGIGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT+ALH IA+ Q+ GG  AF+DAEHALD +YA+KLGV+++ LL+SQPD
Sbjct: 59  IIEVYGPESSGKTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDI+VIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K  + + GN
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TR+KVVKNK+A PF+  E DIMYGEGIS  GE+IDLG +  IV KSG+W+S++ +RLGQ
Sbjct: 239 KTRIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           GREN+K FL+EN +I   I+  +R++ GL  + + Q+P
Sbjct: 299 GRENAKQFLKENKDIMLMIQEQIREHYGLDNNGVAQKP 336


>gi|258516256|ref|YP_003192478.1| recA protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257779961|gb|ACV63855.1| recA protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 343

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 213/339 (62%), Positives = 265/339 (78%), Gaps = 2/339 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KALE AL+ I++ +GKGA+M+LG   +  + +EV+S+G L LDIALGIGG P+GR+V
Sbjct: 4   DKQKALERALADIEKQFGKGAVMKLGESPA--KNVEVISTGVLSLDIALGIGGVPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A++QK GG  AFVDAEHALD  YA+KLGVD++NLL+SQPDTG
Sbjct: 62  EIYGPESSGKTTVALHVVAEAQKDGGMAAFVDAEHALDPTYAQKLGVDIENLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVD+IV+DSVAAL PRAEIEGDMG+S  G+QARLMSQALRKLT  +
Sbjct: 122 EQALEIAEALVRSGAVDVIVVDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKLTGVV 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S C ++FINQ+R K+GVMFG+PETT GG ALKFYSS+RLD+R+   IK     TGN+T
Sbjct: 182 SKSNCTIIFINQLREKVGVMFGNPETTPGGRALKFYSSIRLDVRKGEPIKQGADFTGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNKMA PFKQ EFDIM+G GIS  G L+D+ V  +I++KSGAW+S+  +RLGQGR
Sbjct: 242 KVKVVKNKMAPPFKQAEFDIMFGTGISREGTLLDVAVDLNIINKSGAWYSYNNERLGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
           EN K  L+E  E+A  IE  +R    +           +
Sbjct: 302 ENVKDLLKEKQEMAREIEQKVRALVNVAPQQPAGPEQSD 340


>gi|56963964|ref|YP_175695.1| recombinase A [Bacillus clausii KSM-K16]
 gi|59798129|sp|Q5WFX1|RECA_BACSK RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|56910207|dbj|BAD64734.1| recombination protein A [Bacillus clausii KSM-K16]
          Length = 350

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 209/331 (63%), Positives = 268/331 (80%), Gaps = 2/331 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+ +AL+ AL  I++ +GKG+IM+LG Q    + +  VSSG+L LDIALG+GG+PKGR
Sbjct: 1   MSDRKQALDMALRHIEKQFGKGSIMKLGEQAE--QRVSTVSSGTLALDIALGVGGYPKGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++E+YGPESSGKTT+ALH IA+ Q+ GG  AF+DAEHALD +YA KLGV++  LL+SQPD
Sbjct: 59  VIEVYGPESSGKTTVALHAIAEVQRNGGQAAFIDAEHALDPVYASKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGA+DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGALDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR  ++K  + I GN
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKQGNEIVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK+A PF+  E DIMYGEGIS  G ++D+  +  IV+KSGAW+S+KG RLGQ
Sbjct: 239 RTKIKVVKNKVAPPFRLAEVDIMYGEGISREGSMLDIASELDIVEKSGAWYSYKGDRLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           GRENSK FL+EN EI   IE L+R + GL  
Sbjct: 299 GRENSKQFLKENPEITAEIERLIRDHHGLDG 329


>gi|154483622|ref|ZP_02026070.1| hypothetical protein EUBVEN_01326 [Eubacterium ventriosum ATCC
           27560]
 gi|149735532|gb|EDM51418.1| hypothetical protein EUBVEN_01326 [Eubacterium ventriosum ATCC
           27560]
          Length = 383

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 200/351 (56%), Positives = 266/351 (75%), Gaps = 1/351 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +   EMN  DK KAL+AA++QI+R +GKG+IM+LG  G     +E + +GSL LD+ALG+
Sbjct: 34  EEDDEMNKEDKLKALDAAIAQIERQHGKGSIMKLGDSGKSMN-VETIPTGSLSLDLALGM 92

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG PKGR+VEIYGPESSGKTT+ALH IA+ QK GG   F+DAEHALD +YA+ +GVD+ N
Sbjct: 93  GGIPKGRVVEIYGPESSGKTTVALHMIAEVQKRGGVAGFIDAEHALDPVYAKAIGVDIDN 152

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L ISQPD GEQALEIT+ +VRSGAVDIIV+DSVAAL P+AEI+G+MGES  G  ARLMSQ
Sbjct: 153 LYISQPDYGEQALEITETMVRSGAVDIIVVDSVAALVPKAEIDGEMGESHMGQHARLMSQ 212

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT  ++++ C ++FINQ+R KIGVMFG+PETTTGG ALKFY+SVR+D+RRV ++K 
Sbjct: 213 ALRKLTGIMNKTGCTVIFINQLREKIGVMFGNPETTTGGRALKFYASVRMDVRRVETLKT 272

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
              + GN+ RVKVVKNK+A PFK+ EFDIM+G+GIS  G+++DL     +V KSG+W+++
Sbjct: 273 GGEMVGNRARVKVVKNKIAPPFKEAEFDIMFGKGISREGDILDLAANCGVVIKSGSWYAY 332

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
             +++GQGREN+K +  EN  + E +E  +R    +      +      ++
Sbjct: 333 NNEKIGQGRENAKKYFMENPAVMEEVEQKVRDFYNIDGTQQEEAEQPVGEE 383


>gi|320105928|ref|YP_004181518.1| recA protein [Terriglobus saanensis SP1PR4]
 gi|319924449|gb|ADV81524.1| recA protein [Terriglobus saanensis SP1PR4]
          Length = 360

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 207/352 (58%), Positives = 283/352 (80%), Gaps = 1/352 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KA+E AL+ I++ +GKG+IM+LG++ +I   I V+S+GS+  D+ALG+GG P+GR++
Sbjct: 4   DRGKAIELALAGIEKQFGKGSIMRLGAKDAIV-PISVISTGSISFDLALGVGGVPRGRVI 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTT+ L  IA++Q+ GG  AFVDAEHALD +YARKLGVD  NLLISQPD G
Sbjct: 63  EIFGPESSGKTTITLQIIAEAQRAGGLAAFVDAEHALDPVYARKLGVDTDNLLISQPDYG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ LVRSGA+DI+V+DSVAAL P+AE++G+MG+S  G+ ARLMSQALRKLT ++
Sbjct: 123 EQALEITEALVRSGAIDILVVDSVAALVPKAELDGEMGDSHVGLHARLMSQALRKLTGTV 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S+  L+FINQ+R KIGVMFGSPETTTGG ALKFYSSVR+DIRR+G++K+ D + G++T
Sbjct: 183 SKSRTSLIFINQIREKIGVMFGSPETTTGGRALKFYSSVRIDIRRIGAVKEGDVVVGSRT 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           + K+VKNK+A+PF++ EFDI+YGEGIS  G+++DL V  +IVDKSGAW+S++G+R+GQGR
Sbjct: 243 KTKIVKNKVAAPFREAEFDILYGEGISREGDVLDLAVVHNIVDKSGAWYSYQGERIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           EN + FL+ N +I + ++  LR   G+ A S+   P     +D  +   + V
Sbjct: 303 ENVRGFLKLNPDIFDRMDQELRAKLGIGAASITAAPVPEAPEDGAEKAAEVV 354


>gi|78485933|ref|YP_391858.1| recA protein [Thiomicrospira crunogena XCL-2]
 gi|123741557|sp|Q31F89|RECA_THICR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|78364219|gb|ABB42184.1| RecA protein [Thiomicrospira crunogena XCL-2]
          Length = 347

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 229/349 (65%), Positives = 292/349 (83%), Gaps = 8/349 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALEAAL QI++ +GKG+IM++G +G+I   I+ VS+GSLGLD+ALGIGG P+GR+V
Sbjct: 4   NKKKALEAALGQIEKQFGKGSIMRMGDKGAIR-DIDSVSTGSLGLDVALGIGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GGT AFVDAEHALD IYA KLGVD+ NLL+SQPDTG
Sbjct: 63  EIYGPESSGKTTLTLHAIAEMQKMGGTAAFVDAEHALDPIYAEKLGVDIDNLLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSGAVDI+++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT++I
Sbjct: 123 EQALEITDSLVRSGAVDIVIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+  +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK  D I GN+T
Sbjct: 183 KRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKKGDEILGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQVEF+I+YG+GIS  GE+IDLGVK  +++K+GAW+S++GQ++GQG+
Sbjct: 243 RVKVVKNKVSPPFKQVEFEILYGQGISREGEVIDLGVKEKLIEKAGAWYSYQGQKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           +N + FL++N +I E ++  +++        L+ +P      D   D+T
Sbjct: 303 DNVRQFLKDNPDIYETLQVQIKER-------LMPKPNAPKATDEALDET 344


>gi|323496142|ref|ZP_08101202.1| recombinase A [Vibrio sinaloensis DSM 21326]
 gi|323318886|gb|EGA71837.1| recombinase A [Vibrio sinaloensis DSM 21326]
          Length = 347

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 217/353 (61%), Positives = 278/353 (78%), Gaps = 10/353 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ E  I+YG G +  GELIDLGVK  +V+K+GAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKQAETQILYGAGFNREGELIDLGVKHKLVEKAGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N+  FLREN + A+ I++ LR+        +L  PA    DDA+  +    E
Sbjct: 302 ANAGKFLRENPQAAQAIDAKLRE--------MLLSPAEVQPDDAELGEMPEQE 346


>gi|329906521|ref|ZP_08274403.1| RecA protein [Oxalobacteraceae bacterium IMCC9480]
 gi|327547277|gb|EGF32123.1| RecA protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 370

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 229/337 (67%), Positives = 290/337 (86%), Gaps = 1/337 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD +K ++  DKSKAL AAL+QI++ +GKG++M++   G++ E ++VVS+GSLGLDIALG
Sbjct: 1   MDDKKAVSGSDKSKALAAALAQIEKQFGKGSVMRMAD-GAVVEEVQVVSTGSLGLDIALG 59

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG P+GR+VEIYGPESSGKTTL L TIA+ QK GGTCAF+DAEHALD  YA+KLG++L 
Sbjct: 60  VGGLPRGRVVEIYGPESSGKTTLTLQTIAEMQKLGGTCAFIDAEHALDVGYAQKLGINLS 119

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LLISQPDTGEQALEITD LVRSG VD+IVIDSVAALTPRAEIEGDMG+SLPG+QARLMS
Sbjct: 120 ELLISQPDTGEQALEITDALVRSGGVDLIVIDSVAALTPRAEIEGDMGDSLPGLQARLMS 179

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT SI+R+  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK
Sbjct: 180 QALRKLTGSINRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIK 239

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             D + GN+T+VKVVKNK+A PF++  FDI+YGEG+S  GE++DLG  A IV+K+GAW+S
Sbjct: 240 SGDEVIGNETKVKVVKNKIAPPFREAHFDILYGEGVSREGEILDLGADAKIVEKAGAWYS 299

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           + G+R+GQG++N++ FL+E  E+A  IE+ +R + G+
Sbjct: 300 YNGERIGQGKDNARTFLKERPELAREIENKVRVSLGV 336


>gi|47571280|gb|AAT35797.1| RecA [Mycobacterium szulgai]
          Length = 324

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 199/322 (61%), Positives = 264/322 (81%), Gaps = 2/322 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 5   PDREKALELAMAQIEKSYGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA++LGVD  +LL+SQPDT
Sbjct: 63  IEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKRLGVDTDSLLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DI+VIDSV AL PRAE+EG+MG+S  G+QARLMSQALRK+T +
Sbjct: 123 GEQALEIADMLIRSGALDIVVIDSVTALVPRAELEGEMGDSHVGLQARLMSQALRKMTGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+
Sbjct: 183 LNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVK+VKNK++ PFKQ EFDI+YG+GIS  G LID+GV    + KSGAWF+++G++LGQG
Sbjct: 243 TRVKIVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVDQGFIRKSGAWFTYEGEQLGQG 302

Query: 310 RENSKIFLRENIEIAENIESLL 331
           +EN++ FL EN ++A  IE  +
Sbjct: 303 KENARNFLMENADVANEIEKKI 324


>gi|119713373|gb|ABL97436.1| recA DNA recombination protein [uncultured marine bacterium
           EB80_69G07]
          Length = 382

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 223/343 (65%), Positives = 289/343 (84%), Gaps = 2/343 (0%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
            +E++I +K+KAL+AA+SQI   +GKG++M+LG + ++   IE +S+GSL LD+ALGIGG
Sbjct: 14  DQELDIKEKNKALDAAISQITDNFGKGSVMKLGEKRAM--DIESISTGSLSLDLALGIGG 71

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            PKGRI+E+YGPESSGKTTLAL  +A++QK GG CAFVDAEHALD +YA+KLGV+ + LL
Sbjct: 72  LPKGRIIEVYGPESSGKTTLALQVVAEAQKAGGICAFVDAEHALDPVYAKKLGVNTEELL 131

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           ISQPD GEQALEI D LV+SG++ +IVIDSVAALTP+AEIEG+MG+   G+Q+RLMSQAL
Sbjct: 132 ISQPDAGEQALEIADTLVKSGSISVIVIDSVAALTPKAEIEGEMGDHHVGLQSRLMSQAL 191

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT SIS +  +++FINQ+RMKIGVMFGSPETT+GGNALKFYSSVR+DIRR+G+IKDKD
Sbjct: 192 RKLTGSISNTNTMMIFINQIRMKIGVMFGSPETTSGGNALKFYSSVRMDIRRIGAIKDKD 251

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            I GN TRVKVVKNK+A PFK VEFD+MYG GIS  GEL+DLG KA I++KSGAW+++KG
Sbjct: 252 EIIGNTTRVKVVKNKVAPPFKVVEFDLMYGRGISKMGELVDLGAKADIIEKSGAWYAYKG 311

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           +++GQGREN+K +L +N ++A  IE  +R+ AG+++  +   P
Sbjct: 312 EKIGQGRENAKTYLAQNPKVAAEIEMAIREKAGVISKKIEGNP 354


>gi|229525204|ref|ZP_04414609.1| RecA protein [Vibrio cholerae bv. albensis VL426]
 gi|229338785|gb|EEO03802.1| RecA protein [Vibrio cholerae bv. albensis VL426]
          Length = 354

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 210/345 (60%), Positives = 275/345 (79%), Gaps = 2/345 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTG
Sbjct: 62  EIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            N+  +L+EN EIA+ ++  LR+      +  L   A +  DD +
Sbjct: 302 VNACKYLKENPEIAKTLDKKLREMLLNPENMQLIAEASSAADDVE 346


>gi|160933139|ref|ZP_02080528.1| hypothetical protein CLOLEP_01982 [Clostridium leptum DSM 753]
 gi|156868213|gb|EDO61585.1| hypothetical protein CLOLEP_01982 [Clostridium leptum DSM 753]
          Length = 391

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 212/332 (63%), Positives = 266/332 (80%), Gaps = 2/332 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
            E   VDKSKALE AL QI++ +GKGA+M+LG   ++   ++ + +GSL LD+ALGIGG 
Sbjct: 17  NETMAVDKSKALETALGQIEKQFGKGAVMRLGQNEAMH--VDAIPTGSLSLDLALGIGGL 74

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GRIVEIYGPESSGKTTLALH IA+ QK+GG  AF+D EHALD +YAR LGVD+ +LL+
Sbjct: 75  PRGRIVEIYGPESSGKTTLALHCIAEGQKSGGYAAFIDVEHALDPVYARALGVDVDSLLV 134

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEIT+ LVRSGA+D+IV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALR
Sbjct: 135 SQPDTGEQALEITEALVRSGAIDVIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 194

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KL  +IS+S C+ +FINQ+R K+GVM+G+PE T GG ALKFYSSVR+DIRR+ ++K    
Sbjct: 195 KLAGAISKSNCVAIFINQLREKVGVMYGNPEVTPGGRALKFYSSVRIDIRRIETLKAGGE 254

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + G++TR KVVKNK+A PF++ EFD+MYG GIS  GEL+DL VK  +V KSGAWFSF G+
Sbjct: 255 MIGSRTRAKVVKNKIAPPFREAEFDVMYGRGISREGELLDLAVKLDVVQKSGAWFSFNGE 314

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAG 336
           RLGQGR+N K + R + + A  IE  +  NAG
Sbjct: 315 RLGQGRDNVKEYFRSHPDFAAKIEKQVYDNAG 346


>gi|330831304|ref|YP_004394256.1| recombinase A [Aeromonas veronii B565]
 gi|328806440|gb|AEB51639.1| recombinase A [Aeromonas veronii B565]
          Length = 354

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 223/353 (63%), Positives = 277/353 (78%), Gaps = 2/353 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LD+ALGIGG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDSKTM--DIEAISTGSLSLDVALGIGGLPCGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD IYA KLGV++ +LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS AVD+I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 122 EQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+ +FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+T
Sbjct: 182 KNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF I YG GIS  GEL+DLGVK  ++DK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVAPPFKQAEFQIFYGAGISKEGELVDLGVKHKLIDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N      EN  +A  +E+ LR+     A  +  + A    D+ D +     E
Sbjct: 302 ANVMKLFAENKVMAGEVEARLRELLLSGAVPVDDKAAPVEADEFDAESEQEFE 354


>gi|160876375|ref|YP_001555691.1| recombinase A [Shewanella baltica OS195]
 gi|304410157|ref|ZP_07391776.1| recA protein [Shewanella baltica OS183]
 gi|307302132|ref|ZP_07581890.1| recA protein [Shewanella baltica BA175]
 gi|189039607|sp|A9KYG0|RECA_SHEB9 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|160861897|gb|ABX50431.1| recA protein [Shewanella baltica OS195]
 gi|304351566|gb|EFM15965.1| recA protein [Shewanella baltica OS183]
 gi|306914170|gb|EFN44591.1| recA protein [Shewanella baltica BA175]
 gi|315268565|gb|ADT95418.1| recA protein [Shewanella baltica OS678]
          Length = 355

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 219/354 (61%), Positives = 277/354 (78%), Gaps = 8/354 (2%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL A L QI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P GRI
Sbjct: 5   PNKEKALAAVLIQIEKQFGKGSIMKLGEDRSM--DVETISTGSLSLDVALGAGGLPMGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDT
Sbjct: 63  VEIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  +
Sbjct: 123 GEQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           + +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+
Sbjct: 183 LKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNE 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A+PFKQ EF I+YG+GI+  GEL+DLGV   +++K+GAW+S+KG ++GQG
Sbjct: 243 TRVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           R N+  +L EN  IA  I+  LR+        L    A+  KDDA  +D  ++E
Sbjct: 303 RANAGKYLTENPAIATEIDKTLRELL------LSNPSALAAKDDASTEDNVDLE 350


>gi|295696220|ref|YP_003589458.1| recA protein [Bacillus tusciae DSM 2912]
 gi|295411822|gb|ADG06314.1| recA protein [Bacillus tusciae DSM 2912]
          Length = 351

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 212/324 (65%), Positives = 272/324 (83%), Gaps = 1/324 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG   +    +EVVS+G+L LDIALG+GGFP+GR
Sbjct: 1   MADRKAALDMALRQIEKQFGKGSIMKLGEAQASMN-VEVVSTGALALDIALGVGGFPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EIYGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD +YAR LGV++  LLISQPD
Sbjct: 60  VIEIYGPESSGKTTVALHAIAEVQKLGGQAAFIDAEHALDPVYARNLGVNIDELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDIIVIDSVAAL P+AE+EGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 120 TGEQALEIAEALVRSGAVDIIVIDSVAALVPKAELEGDMGDSHVGLQARLMSQALRKLSG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +IS+S+ I +FINQ+R K+GVMFG+PETTTGG ALKFYSSVRL++RR  ++K  + + GN
Sbjct: 180 AISKSRTIAIFINQIREKVGVMFGNPETTTGGRALKFYSSVRLEVRRAEALKQGNELIGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TR+KVVKNK+A PFKQ + DIM+GEGIS  G ++DLGV+  +++KSGAW+SF+G+RLGQ
Sbjct: 240 RTRIKVVKNKVAPPFKQADVDIMFGEGISREGSIVDLGVEMDVIEKSGAWYSFEGERLGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLR 332
           GREN+K FL+E+ EIA+ IE  +R
Sbjct: 300 GRENAKQFLKEHPEIADRIEGKIR 323


>gi|262164030|ref|ZP_06031769.1| RecA protein [Vibrio mimicus VM223]
 gi|262027558|gb|EEY46224.1| RecA protein [Vibrio mimicus VM223]
          Length = 354

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 209/345 (60%), Positives = 274/345 (79%), Gaps = 2/345 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTG
Sbjct: 62  EIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            N+  +L+EN EIA+ ++  LR+      +  L     +  DD +
Sbjct: 302 ANACKYLKENPEIAKTLDKKLREMLLNPENMQLTGETSSAADDVE 346


>gi|126175318|ref|YP_001051467.1| recombinase A [Shewanella baltica OS155]
 gi|153001639|ref|YP_001367320.1| recombinase A [Shewanella baltica OS185]
 gi|217972430|ref|YP_002357181.1| recombinase A [Shewanella baltica OS223]
 gi|166220677|sp|A3D785|RECA_SHEB5 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166220678|sp|A6WR18|RECA_SHEB8 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|254790445|sp|B8E8U2|RECA_SHEB2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|125998523|gb|ABN62598.1| recA protein [Shewanella baltica OS155]
 gi|151366257|gb|ABS09257.1| recA protein [Shewanella baltica OS185]
 gi|217497565|gb|ACK45758.1| recA protein [Shewanella baltica OS223]
          Length = 355

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 215/351 (61%), Positives = 276/351 (78%), Gaps = 2/351 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL A L QI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P GRI
Sbjct: 5   PNKEKALAAVLIQIEKQFGKGSIMKLGEDRSM--DVETISTGSLSLDVALGAGGLPMGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDT
Sbjct: 63  VEIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  +
Sbjct: 123 GEQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           + +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+
Sbjct: 183 LKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNE 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A+PFKQ EF I+YG+GI+  GEL+DLGV   +++K+GAW+S+KG ++GQG
Sbjct: 243 TRVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           R N+  +L EN  IA  I+  LR+       +L  +   +T+D+ D +  +
Sbjct: 303 RANAGKYLTENPAIATEIDKTLRELLLSNPSALAAKADASTEDNVDLETGE 353


>gi|132226|sp|P24542|RECA_METCL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|44204|emb|CAA42101.1| recA protein [Methylomonas clara]
          Length = 342

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 229/343 (66%), Positives = 286/343 (83%), Gaps = 4/343 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AALSQI++ +GKG+IM++G    I E ++VVS+GSLGLDIALG+GG P+GRI+
Sbjct: 4   NKSKALAAALSQIEKQFGKGSIMRMGD-ADIGEDLQVVSTGSLGLDIALGVGGLPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GG  AF+DA+ ALD  YA KLGV++  LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLSAIAEMQKLGGVAAFIDADDALDPQYASKLGVNVPELLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VDI+V+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRKLT +I
Sbjct: 123 EQALEIADMLVRSGSVDIVVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKLTGNI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+  +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR G+IK  D + G++T
Sbjct: 183 KRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGAIKKGDEVIGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV+KNK+A PFKQ EFDIMYGEGIS  GE+I+LG    +V+KSGAW+S+ G+++GQG+
Sbjct: 243 KVKVIKNKVAPPFKQAEFDIMYGEGISRLGEIIELGTNLKLVEKSGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           EN+K FLREN  IA  IE+ +R N+ ++ADS+    A  ++DD
Sbjct: 303 ENAKEFLRENPAIAAEIEAKIRDNSNVLADSMT---AARSEDD 342


>gi|325661213|ref|ZP_08149840.1| recA [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325472720|gb|EGC75931.1| recA [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 347

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 203/348 (58%), Positives = 272/348 (78%), Gaps = 1/348 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   DK KAL+AA++++++ +GKGA+M+LG   +    +E V +GSL LDIALG+GG PK
Sbjct: 1   MAGDDKLKALDAAIAKLEKDFGKGAVMKLGDAAANV-SVETVPTGSLSLDIALGLGGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTT+ALH IA+ QK GG   F+DAEHALD +YA+ +GVD+  L ISQ
Sbjct: 60  GRIIEIYGPESSGKTTVALHMIAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDELYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+G+QALEIT+ +VRSGA+DIIV+DSVAAL PR EIEGDMG+S  G+QARLMSQALRKL
Sbjct: 120 PDSGDQALEITETMVRSGAMDIIVVDSVAALVPRQEIEGDMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T  IS+S C+++FINQ+R K+GVMFG+PETTTGG ALKFY+S+R+D+RR  ++K    + 
Sbjct: 180 TPVISKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASIRMDVRRTETLKQGGEMV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR+KVVKNK+A PFK+ EFDIM+G+GIS  G+++DL     I++KSGAW+++ G ++
Sbjct: 240 GNRTRIKVVKNKIAPPFKEAEFDIMFGKGISKEGDILDLAAGLDIINKSGAWYAYNGDKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           GQGREN+K +L  + E+ E IE+ +R +  L   +  +E A   K D 
Sbjct: 300 GQGRENAKTYLSTHPEVMEEIEAKVRAHYKLDGAAGEEELAAEQKADE 347


>gi|227114948|ref|ZP_03828604.1| recombinase A [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
 gi|227329401|ref|ZP_03833425.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum WPP14]
          Length = 357

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 214/353 (60%), Positives = 277/353 (78%), Gaps = 2/353 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++T
Sbjct: 184 KQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N+  FL+EN  IA  ++  LR+      + L    A N+ D+ +     N E
Sbjct: 304 ANACNFLKENPAIAAELDKKLREMLLHKGNELTPAAAGNSHDEDEFAGEGNEE 356


>gi|145600309|ref|YP_001164385.1| recombinase A [Yersinia pestis Pestoides F]
 gi|166220693|sp|A4TQ50|RECA_YERPP RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|145212005|gb|ABP41412.1| RecA protein [Yersinia pestis Pestoides F]
          Length = 356

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 218/353 (61%), Positives = 279/353 (79%), Gaps = 3/353 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLAL  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLALQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGDVVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N+  +L+EN  IA  ++  LR+   L   +  Q  A  T + AD  D  N E
Sbjct: 304 ANASNYLKENPAIAAELDKKLREML-LNGGNGEQPVAAATAEFADGADETNEE 355


>gi|125973565|ref|YP_001037475.1| recA protein [Clostridium thermocellum ATCC 27405]
 gi|256003384|ref|ZP_05428375.1| recA protein [Clostridium thermocellum DSM 2360]
 gi|281417770|ref|ZP_06248790.1| recA protein [Clostridium thermocellum JW20]
 gi|125713790|gb|ABN52282.1| RecA protein [Clostridium thermocellum ATCC 27405]
 gi|255992674|gb|EEU02765.1| recA protein [Clostridium thermocellum DSM 2360]
 gi|281409172|gb|EFB39430.1| recA protein [Clostridium thermocellum JW20]
 gi|316940193|gb|ADU74227.1| recA protein [Clostridium thermocellum DSM 1313]
          Length = 349

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 207/328 (63%), Positives = 272/328 (82%), Gaps = 2/328 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           +++K KALE  L QI++ +GKGA+M+LG    +   IE + +G+LGLDIALG+GG P+GR
Sbjct: 1   MIEKKKALEMVLGQIEKQFGKGAVMKLGENTHM--NIETIPTGALGLDIALGVGGVPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEI+GPESSGKTT+ALH IA++QK GG  AF+DAEHALD +YA+ LGVD++NL++SQPD
Sbjct: 59  IVEIFGPESSGKTTVALHIIAEAQKAGGEAAFIDAEHALDPVYAKNLGVDIENLIVSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGA+D+IVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL  
Sbjct: 119 TGEQALEIAEALVRSGAIDVIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            I++S+   +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+RR+ SIK  + + G+
Sbjct: 179 VINKSRTTAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRRLESIKQGNEVIGS 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T+VKVVKNK+A PFK+ EFDI+YG+GIS  G ++D+ V   IV+KSGAWFS+ GQ++GQ
Sbjct: 239 RTKVKVVKNKVAPPFKEAEFDIIYGQGISKEGNILDVAVNLDIVNKSGAWFSYNGQKIGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAG 336
           GREN+K FL+EN EIA+ IE+ +R+N  
Sbjct: 299 GRENAKQFLKENPEIAKEIETKIRENYN 326


>gi|296803114|gb|ADH51633.1| DNA recombinase [Burkholderia stabilis]
          Length = 322

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 223/323 (69%), Positives = 279/323 (86%), Gaps = 1/323 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGN LKFY+SVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNELKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           VKNK++ PF++  FDI+YGEGIS  GE+IDL V+A IVDK+GAW+S+ G+++GQG++N++
Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLRVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGL 337
            FLREN EIA  IE+ +R++ G+
Sbjct: 300 EFLRENPEIAREIENRIRESLGV 322


>gi|157326957|gb|ABV44591.1| RecA [Burkholderia cenocepacia]
          Length = 325

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 225/324 (69%), Positives = 281/324 (86%), Gaps = 1/324 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L A L+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGP
Sbjct: 1   LAAPLAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALE
Sbjct: 60  ESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           ITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C
Sbjct: 120 ITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNC 179

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVV
Sbjct: 180 LVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVV 239

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ 
Sbjct: 240 KNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNARE 299

Query: 316 FLRENIEIAENIESLLRQNAGLVA 339
           FLREN EIA  IE+ +R++ G+V+
Sbjct: 300 FLRENPEIAREIENRIRESLGVVS 323


>gi|121590677|ref|ZP_01678010.1| recA protein [Vibrio cholerae 2740-80]
 gi|153214933|ref|ZP_01949716.1| recA protein [Vibrio cholerae 1587]
 gi|153819105|ref|ZP_01971772.1| recA protein [Vibrio cholerae NCTC 8457]
 gi|229507155|ref|ZP_04396661.1| RecA protein [Vibrio cholerae BX 330286]
 gi|229508983|ref|ZP_04398471.1| RecA protein [Vibrio cholerae B33]
 gi|229519650|ref|ZP_04409093.1| RecA protein [Vibrio cholerae RC9]
 gi|229520838|ref|ZP_04410260.1| RecA protein [Vibrio cholerae TM 11079-80]
 gi|229530356|ref|ZP_04419744.1| RecA protein [Vibrio cholerae 12129(1)]
 gi|229606167|ref|YP_002876815.1| recombinase A [Vibrio cholerae MJ-1236]
 gi|255744230|ref|ZP_05418183.1| RecA protein [Vibrio cholera CIRS 101]
 gi|262149024|ref|ZP_06028168.1| RecA protein [Vibrio cholerae INDRE 91/1]
 gi|1172891|sp|P45383|RECA_VIBCH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|498639|gb|AAC43291.1| RecA [Vibrio cholerae 2740-80]
 gi|829040|gb|AAB59100.1| putative [Vibrio cholerae]
 gi|121547463|gb|EAX57571.1| recA protein [Vibrio cholerae 2740-80]
 gi|124115006|gb|EAY33826.1| recA protein [Vibrio cholerae 1587]
 gi|126510337|gb|EAZ72931.1| recA protein [Vibrio cholerae NCTC 8457]
 gi|229332129|gb|EEN97617.1| RecA protein [Vibrio cholerae 12129(1)]
 gi|229342071|gb|EEO07067.1| RecA protein [Vibrio cholerae TM 11079-80]
 gi|229344339|gb|EEO09314.1| RecA protein [Vibrio cholerae RC9]
 gi|229353908|gb|EEO18842.1| RecA protein [Vibrio cholerae B33]
 gi|229355900|gb|EEO20820.1| RecA protein [Vibrio cholerae BX 330286]
 gi|229368822|gb|ACQ59245.1| RecA protein [Vibrio cholerae MJ-1236]
 gi|255738170|gb|EET93562.1| RecA protein [Vibrio cholera CIRS 101]
 gi|262031169|gb|EEY49789.1| RecA protein [Vibrio cholerae INDRE 91/1]
 gi|327483362|gb|AEA77769.1| RecA protein [Vibrio cholerae LMA3894-4]
          Length = 354

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 209/345 (60%), Positives = 274/345 (79%), Gaps = 2/345 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTG
Sbjct: 62  EIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            N+  +L+EN EIA+ ++  LR+      +  L     +  DD +
Sbjct: 302 ANACKYLKENPEIAKTLDKKLREMLLNPENMQLIAETSSAADDVE 346


>gi|262190761|ref|ZP_06048988.1| RecA protein [Vibrio cholerae CT 5369-93]
 gi|262033346|gb|EEY51857.1| RecA protein [Vibrio cholerae CT 5369-93]
          Length = 354

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 209/345 (60%), Positives = 275/345 (79%), Gaps = 2/345 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTG
Sbjct: 62  EIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            N+  +L+EN EIA+ ++  LR+      +  L   + +  DD +
Sbjct: 302 ANACKYLKENPEIAKTLDKKLREMLLNPENMQLIAESSSAADDVE 346


>gi|156975769|ref|YP_001446676.1| recombinase A [Vibrio harveyi ATCC BAA-1116]
 gi|156527363|gb|ABU72449.1| hypothetical protein VIBHAR_03513 [Vibrio harveyi ATCC BAA-1116]
          Length = 354

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 212/357 (59%), Positives = 286/357 (80%), Gaps = 4/357 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M+  +++   +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG
Sbjct: 1   MNKSEKVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALG 58

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ 
Sbjct: 59  AGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDID 118

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++S
Sbjct: 119 ALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLS 178

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK
Sbjct: 179 QAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIK 238

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           + D + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+K+GAW+S
Sbjct: 239 EGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYS 298

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           ++G ++GQG+ N+  +LREN EI + I++ LR+   L++ +L + P    K + +++
Sbjct: 299 YQGDKIGQGKANACNYLRENPEIGKTIDAKLREM--LLSPALPEAPESGEKSEQEEE 353


>gi|283835572|ref|ZP_06355313.1| protein RecA [Citrobacter youngae ATCC 29220]
 gi|291068782|gb|EFE06891.1| protein RecA [Citrobacter youngae ATCC 29220]
          Length = 354

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 215/350 (61%), Positives = 281/350 (80%), Gaps = 2/350 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
            N+  +L+EN   A+ IE  LR+      DS       ++ +D  + + D
Sbjct: 304 ANATNWLKENPATAKEIEKKLRELLLNNQDSTPDFSVDDSGEDVAETNED 353


>gi|109453490|gb|ABG34225.1| RecA [Salmonella enterica subsp. indica]
 gi|109453492|gb|ABG34226.1| RecA [Salmonella enterica subsp. indica]
 gi|109453494|gb|ABG34227.1| RecA [Salmonella enterica subsp. indica]
 gi|109453496|gb|ABG34228.1| RecA [Salmonella enterica subsp. indica]
 gi|109453498|gb|ABG34229.1| RecA [Salmonella enterica subsp. indica]
 gi|109453500|gb|ABG34230.1| RecA [Salmonella enterica subsp. indica]
          Length = 353

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 212/348 (60%), Positives = 282/348 (81%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            N+  +L+EN   A+ IE  +R+      ++       +++D A+ ++
Sbjct: 304 ANATTWLKENPTTAKEIEKKVRELLLSNQNATPDFAVDDSEDVAETNE 351


>gi|172057063|ref|YP_001813523.1| recA protein [Exiguobacterium sibiricum 255-15]
 gi|229892799|sp|B1YMB9|RECA_EXIS2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|171989584|gb|ACB60506.1| recA protein [Exiguobacterium sibiricum 255-15]
          Length = 347

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 209/345 (60%), Positives = 273/345 (79%), Gaps = 2/345 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  ALE AL QI++ +GKG+IM+LG      + + V+SSGS+ LDIALG GG+P+GR
Sbjct: 1   MSDRKAALEMALRQIEKQFGKGSIMKLGESAD--QRVSVISSGSITLDIALGAGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++E+YGPESSGKTT++LH IA+ QK GG  AF+DAEHALD  YA KLGV++  LL+SQPD
Sbjct: 59  VIEVYGPESSGKTTVSLHAIAEVQKQGGQAAFIDAEHALDPAYASKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDI+V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDILVVDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           + ++SK I++FINQ+R KIGVMFG+PETT GG ALKFYSSVRL++RR  ++K+   I GN
Sbjct: 179 ATNKSKTIVIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKNGTDIVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK+A PFKQ E DIMYG+GIS FGELIDLG    IV KSGAW+S+  +RLGQ
Sbjct: 239 RTKLKVVKNKIAPPFKQAEVDIMYGQGISKFGELIDLGTDLDIVQKSGAWYSYNSERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           GREN+K ++ E+ ++A+ +E L+R++ GLV      +      +D
Sbjct: 299 GRENAKQYMIEHPDVADEVERLIREHHGLVDRKEPVDFEEGQDED 343


>gi|284992305|ref|YP_003410859.1| recA protein [Geodermatophilus obscurus DSM 43160]
 gi|284065550|gb|ADB76488.1| recA protein [Geodermatophilus obscurus DSM 43160]
          Length = 344

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 197/347 (56%), Positives = 269/347 (77%), Gaps = 4/347 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M  +D+ KAL+ AL+QI + +GKG++M+LG    +   ++V+ +GS+ LDIALGIGG P+
Sbjct: 1   MATLDRDKALDMALAQIDKQFGKGSVMRLGDSPEV--AMKVIPTGSIALDIALGIGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++E+YGPE+SGKTT+ALH +A +Q  GG  AF+DAEHALD  YAR +GVD   LL+SQ
Sbjct: 59  GRVIEVYGPEASGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYARAIGVDTDALLVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI DML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDTGEQALEIADMLIRSGALDVIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T +++ S    +FINQ+R K+GV++GSPE TTGG ALKFYSSVRLD+RR+ ++K      
Sbjct: 179 TGALNNSGTTAIFINQLREKVGVVYGSPEVTTGGRALKFYSSVRLDVRRIETLKQGTEAV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G++ RVKVVKNK+A+PFKQ E D+++G+G S  G LID GV+   + KSGAW++++G +L
Sbjct: 239 GSRVRVKVVKNKVAAPFKQAELDLLWGQGFSREGGLIDAGVEQGFIRKSGAWYTYEGDQL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           GQG+EN + FLR+N ++A+ IE  +++  G+ A   L EP +  + D
Sbjct: 299 GQGKENVRTFLRDNPDLADEIEKKVKEKLGIGAK--LDEPVVADQPD 343


>gi|331269615|ref|YP_004396107.1| recA protein [Clostridium botulinum BKT015925]
 gi|329126165|gb|AEB76110.1| recA protein [Clostridium botulinum BKT015925]
          Length = 348

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 213/349 (61%), Positives = 276/349 (79%), Gaps = 2/349 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +K KAL+AAL+QI++ +GKG++M+LG +  +   IE +S+GSL LDIALGIGG P+GR
Sbjct: 2   NTEKMKALQAALTQIEKQFGKGSVMKLGEEKVL--NIEAISTGSLSLDIALGIGGIPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EI+GPESSGKTT+ALH +A++QK GGT AF+DAEHALD +YA+ LGVD+ NL++SQPD
Sbjct: 60  IIEIFGPESSGKTTVALHIVAEAQKAGGTAAFIDAEHALDPVYAKALGVDIDNLIVSQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDIIV+DSVAAL P+AEIEG+MG++  G+QARLMSQALRKLT 
Sbjct: 120 TGEQALEICEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           SI++SKC  +FINQ+R K+G+MFG+PETT GG ALKFY+SVRLD+R++  IK  D+  GN
Sbjct: 180 SINKSKCAAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRKIEIIKQGDAFLGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFKQ EFDIMYG GIS+ G ++D+GV+  I+ KSG+WFS+K  RLGQ
Sbjct: 240 RTRVKVVKNKVAPPFKQAEFDIMYGSGISYEGNVLDVGVENEIIQKSGSWFSYKDTRLGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           GREN K FL+EN  I   +E+ +R    L   +  +        +  K+
Sbjct: 300 GRENVKQFLKENPNILVEVENQIRAKHNLQLRNENENKKSKENPEKVKE 348


>gi|167759044|ref|ZP_02431171.1| hypothetical protein CLOSCI_01391 [Clostridium scindens ATCC 35704]
 gi|167663451|gb|EDS07581.1| hypothetical protein CLOSCI_01391 [Clostridium scindens ATCC 35704]
          Length = 357

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 196/346 (56%), Positives = 270/346 (78%), Gaps = 1/346 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   DK +AL+AA++++++ +GKG +M+LG   +    +E + +GSL LD+ALG+GG PK
Sbjct: 1   MASDDKKRALDAAIAKLEKDFGKGTVMKLGD-PAAQVAVETIPTGSLSLDLALGLGGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE+YGPESSGKTT+ALH IA+ QK GG   F+DAEHALD  YA+ +GVD+  L ISQ
Sbjct: 60  GRVVEVYGPESSGKTTVALHMIAEVQKRGGIAGFIDAEHALDPAYAKNIGVDIDELYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+G+QALEI + +VRSGA+DIIV+DSVAAL PR EIEGDMG+S  G+QARLMSQALRKL
Sbjct: 120 PDSGDQALEIAETMVRSGAMDIIVVDSVAALVPRQEIEGDMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T  IS+S C+++FINQ+R K+GVMFG+PETTTGG ALKFY+S+R+D+RR+ ++K    + 
Sbjct: 180 TPVISKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASIRMDVRRIETLKQSGEMV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVK+VKNK+A PFK+ EFDIM+G+GIS  G+++DL V   +V+KSGAWF++ G ++
Sbjct: 240 GNRTRVKIVKNKIAPPFKEAEFDIMFGKGISKEGDILDLAVSIDLVNKSGAWFAYNGNKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GQGREN+K +L E+ E+ E +E  +R++  L  D         +++
Sbjct: 300 GQGRENAKSYLAEHPEVMEELEKKIREHYDLDRDPASAAGEEKSEE 345


>gi|30142194|emb|CAD83084.1| RecA protein [Burkholderia plantarii]
          Length = 335

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 225/324 (69%), Positives = 280/324 (86%), Gaps = 1/324 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL+QI++ +GKG+IM+LG      E I+VVS+GSLGLDIALG+GG P+GR+VEIYGP
Sbjct: 1   LAAALAQIEKQFGKGSIMKLGD-AEAKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALE
Sbjct: 60  ESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           ITD LVRSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARL SQALRKLT +I R+ C
Sbjct: 120 ITDALVRSGSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLWSQALRKLTGTIKRTNC 179

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVV
Sbjct: 180 LVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVV 239

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ 
Sbjct: 240 KNKVSPPFRESIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNARE 299

Query: 316 FLRENIEIAENIESLLRQNAGLVA 339
           FLREN +IA  IE+ +R++ G+VA
Sbjct: 300 FLRENPDIAREIENRIRESLGVVA 323


>gi|31540555|gb|AAP49240.1| RecA [Mycobacterium peregrinum]
          Length = 325

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 203/322 (63%), Positives = 264/322 (81%), Gaps = 2/322 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 6   PDREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 64  VEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 124 GEQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+
Sbjct: 184 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG GIS  G LID+GV+   + KSG+WF+++G++LGQG
Sbjct: 244 TRVKVVKNKVSPPFKQAEFDILYGHGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLL 331
           +EN++ F+ EN+++A  IE  +
Sbjct: 304 KENARKFMLENVDVANEIEKKI 325


>gi|260779397|ref|ZP_05888288.1| RecA protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604487|gb|EEX30787.1| RecA protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 375

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 217/363 (59%), Positives = 282/363 (77%), Gaps = 10/363 (2%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M+  +++   +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG
Sbjct: 21  MNKSEKVMDDNKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALG 78

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG P GRIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ 
Sbjct: 79  AGGLPMGRIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDID 138

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++S
Sbjct: 139 ALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLS 198

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK
Sbjct: 199 QAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIK 258

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           + D + GN+TR+KVVKNK+A+PFKQ E  IMYG G +  GELIDLGVK  +V+K+GAW+S
Sbjct: 259 EGDEVVGNETRIKVVKNKIAAPFKQAETQIMYGAGFNREGELIDLGVKNKLVEKAGAWYS 318

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           + G ++GQG+ N+  +LREN   A+ I++ LR+        LL  PA    DDA+  +  
Sbjct: 319 YNGDKIGQGKANACKYLRENPAAAQQIDTKLRE--------LLLTPAEIQPDDAELGEMP 370

Query: 361 NVE 363
             E
Sbjct: 371 EQE 373


>gi|229817437|ref|ZP_04447719.1| hypothetical protein BIFANG_02699 [Bifidobacterium angulatum DSM
           20098]
 gi|229785226|gb|EEP21340.1| hypothetical protein BIFANG_02699 [Bifidobacterium angulatum DSM
           20098]
          Length = 395

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 210/348 (60%), Positives = 274/348 (78%), Gaps = 4/348 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL+Q+++ +GKG+ M+LG +    + +EV+ +GSL LD+ALGIGG PKGRIVE
Sbjct: 18  RKAALDTALAQVEKSFGKGSAMRLGDRPE--QNVEVIPTGSLALDMALGIGGLPKGRIVE 75

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTLALH +A +QK GG  AF+DAEHALD +YARKLGVD  +L++SQPD GE
Sbjct: 76  VYGPESSGKTTLALHVVANAQKAGGVAAFIDAEHALDPVYARKLGVDTDSLIVSQPDNGE 135

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DML+RSGA+D+IVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRK+T +++
Sbjct: 136 QALEIADMLIRSGALDVIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKMTGALA 195

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGV FGSPETTTGG ALKFYSSVRLDIRR+ +IK+ D   GN+TR
Sbjct: 196 QAGTTAIFINQLREKIGVFFGSPETTTGGKALKFYSSVRLDIRRIQTIKNGDEAVGNRTR 255

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNKMA PFK  EFD++YGEGIS  G  +D+ ++  +V KSG+WF+++G +LGQGRE
Sbjct: 256 VKVVKNKMAPPFKSAEFDMLYGEGISREGSALDMAIQVGVVKKSGSWFTYEGDQLGQGRE 315

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVA--DSLLQEPAINTKDDADKD 357
           N + FL++N  I E IE+ ++   GL+   D   ++ A     +ADK+
Sbjct: 316 NVRNFLKDNPAITEEIENKVKVEFGLIDPMDQFAEDDATKAAAEADKN 363


>gi|157692378|ref|YP_001486840.1| recombinase A [Bacillus pumilus SAFR-032]
 gi|166918708|sp|A8FDG3|RECA_BACP2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|157681136|gb|ABV62280.1| recombination protein A [Bacillus pumilus SAFR-032]
          Length = 346

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 211/336 (62%), Positives = 268/336 (79%), Gaps = 2/336 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG Q      I  V SGSL LD ALGIGG+P+GR
Sbjct: 1   MSDRQAALDMALKQIEKQFGKGSIMKLGEQTDTR--ISTVPSGSLALDTALGIGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT+ALH IA+ Q+ GG  AF+DAEHALD +YA+KLGV++  LL+SQPD
Sbjct: 59  IIEVYGPESSGKTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDI+VIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K  + I GN
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIMGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TR+KVVKNK+A PF+  E DIMYGEGIS  GE+IDLG +  IV KSGAW+S++ +RLGQ
Sbjct: 239 KTRIKVVKNKVAPPFRIAEVDIMYGEGISKEGEIIDLGSELDIVQKSGAWYSYQEERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
           GREN+K FL+EN +I   I+  +R++ GL  + +  
Sbjct: 299 GRENAKQFLKENKDILLMIQEQIREHYGLDTNGVKA 334


>gi|150171058|emb|CAO01512.1| DNA recombination protein [Burkholderia arboris]
          Length = 336

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 224/318 (70%), Positives = 276/318 (86%), Gaps = 1/318 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIY
Sbjct: 1   KALAAALAQIEKQFGKGSIMRMGD-GDATENIQVVSTGSLGLDIALGVGGLPRGRVVEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQA
Sbjct: 60  GPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+ LPG+QARLMSQALRKLT +I R+
Sbjct: 120 LEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDXLPGLQARLMSQALRKLTGTIKRT 179

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVK
Sbjct: 180 NCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVK 239

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N+
Sbjct: 240 VVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNA 299

Query: 314 KIFLRENIEIAENIESLL 331
           + FLREN EIA  IE+ +
Sbjct: 300 REFLRENPEIAREIENRI 317


>gi|296393357|ref|YP_003658241.1| recA protein [Segniliparus rotundus DSM 44985]
 gi|296180504|gb|ADG97410.1| recA protein [Segniliparus rotundus DSM 44985]
          Length = 346

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 207/328 (63%), Positives = 264/328 (80%), Gaps = 2/328 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +D++KALE ALSQI + +GKG++M+LG Q S  + I V+ +GS+ LD+ALGIGG PKGR+
Sbjct: 5   LDRNKALELALSQIDKSFGKGSVMRLGDQAS--QPIAVIPTGSIALDVALGIGGLPKGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD +NLL+SQPDT
Sbjct: 63  IEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTENLLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 123 GEQALEIADMLIRSGALDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFG  ETTTGG ALKFY+SVRLD+RR+ ++KD      N+
Sbjct: 183 LNNSGTTAIFINQLREKIGVMFGPTETTTGGKALKFYASVRLDVRRIETLKDGTEAVANR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVK+VKNK+A PFKQ EFDI+YG GIS  G +IDLGV+  ++ KSGAW+++  ++LGQG
Sbjct: 243 TRVKIVKNKVAPPFKQAEFDIIYGAGISREGSIIDLGVEHGLIRKSGAWYTYGDEQLGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           +EN++ FL  N + AE IE LLR    +
Sbjct: 303 KENARKFLIANPDKAEEIEMLLRDKLQI 330


>gi|86146338|ref|ZP_01064662.1| recombinase A [Vibrio sp. MED222]
 gi|85835817|gb|EAQ53951.1| recombinase A [Vibrio sp. MED222]
          Length = 346

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 213/323 (65%), Positives = 270/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL L  IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+T
Sbjct: 182 KQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +V+K+GAW+S+KG ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKNKLVEKAGAWYSYKGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +LREN E+A  I++ LR+
Sbjct: 302 ANAGKYLRENPEVALEIDTKLRE 324


>gi|132241|sp|P16238|RECA_THIFE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|154653|gb|AAA27385.1| recA protein [Acidithiobacillus ferrooxidans]
          Length = 346

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 226/324 (69%), Positives = 274/324 (84%), Gaps = 1/324 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +SK L AALSQI + +GKGA+M+LG   +I + IEV S+GSLGLD+ALG+GG P+GR+VE
Sbjct: 5   RSKGLSAALSQIDKQFGKGAVMRLGDHNAI-KDIEVYSTGSLGLDLALGVGGLPRGRVVE 63

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA  Q  GGT AF+DAEHALD  YA KLGVDL+NLLISQPDTGE
Sbjct: 64  IYGPESSGKTTLTLHAIASCQAAGGTAAFIDAEHALDPGYAHKLGVDLENLLISQPDTGE 123

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DMLVRSGAVD+IVIDSVAALTP+AEIEG+MG+S  G+QARLMSQALR LT++IS
Sbjct: 124 QALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRNLTANIS 183

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           RS  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK  D + GN TR
Sbjct: 184 RSNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKKSDEVVGNDTR 243

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF++ EF I YGEGIS   EL+DLGVK  IV+KSGAW+S++G R+GQG++
Sbjct: 244 VKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVKFDIVEKSGAWYSYQGHRIGQGKD 303

Query: 312 NSKIFLRENIEIAENIESLLRQNA 335
           N++ +L+ + E+A NIE  +R  A
Sbjct: 304 NARQYLKVHPELAANIEQRIRAAA 327


>gi|319649486|ref|ZP_08003642.1| recA protein [Bacillus sp. 2_A_57_CT2]
 gi|317398648|gb|EFV79330.1| recA protein [Bacillus sp. 2_A_57_CT2]
          Length = 346

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 208/343 (60%), Positives = 269/343 (78%), Gaps = 2/343 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  ALE AL QI++ +GKG+IM+LG Q      I    SGSL LD ALG+GG+P+GR
Sbjct: 1   MSDRQAALEMALKQIEKQFGKGSIMKLGEQTD--RKISTAPSGSLALDAALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTT+ALH IA+ Q +GG  AF+DAEHALD +YA+ LGV++  LL+SQPD
Sbjct: 59  IIEIYGPESSGKTTVALHAIAEVQASGGQAAFIDAEHALDPVYAQNLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDI+VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR  ++K  + + GN
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNEMVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK+A PF+  E DIMYGEGIS  GE+IDLG +  IV KSG+W+S+  +RLGQ
Sbjct: 239 KTKIKVVKNKVAPPFRVAEVDIMYGEGISKEGEIIDLGSELDIVQKSGSWYSYNEERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           GREN+K+FL+EN EI   I+  +R++ GL  D ++       +
Sbjct: 299 GRENAKVFLKENPEIRLTIQKQIREHYGLDGDKVISGDEEQEE 341


>gi|227357822|ref|ZP_03842170.1| recombination protein A [Proteus mirabilis ATCC 29906]
 gi|227161932|gb|EEI46950.1| recombination protein A [Proteus mirabilis ATCC 29906]
          Length = 364

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 215/352 (61%), Positives = 277/352 (78%), Gaps = 3/352 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P+GRIV
Sbjct: 15  NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--NVETISTGSLSLDVALGAGGLPRGRIV 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G  CAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 73  EIYGPESSGKTTLTLQVIASAQREGKICAFIDAEHALDPIYAQKLGVDIDNLLCSQPDTG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 133 EQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEIGDSHVGLAARMMSQAMRKLAGNL 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GS+K+ D + G++T
Sbjct: 193 KNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKNGDEVIGSET 252

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+ +GELIDLGVK  +V+K+GAW+S+ G+++GQG+
Sbjct: 253 RVKVVKNKVAAPFKQAEFQIMYGEGINTYGELIDLGVKHKLVEKAGAWYSYNGEKIGQGK 312

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA-INTKDDADKDDTDN 361
            N+  +L+E+ E+   + + LR+     A            + D+D DDT  
Sbjct: 313 ANATNYLKEHPEMYNELNTKLREMLLNHAGEFTSAADFAGEESDSDADDTKE 364


>gi|237729653|ref|ZP_04560134.1| RecA [Citrobacter sp. 30_2]
 gi|226908259|gb|EEH94177.1| RecA [Citrobacter sp. 30_2]
          Length = 354

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 215/350 (61%), Positives = 281/350 (80%), Gaps = 2/350 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
            N+  +L+EN   A+ IE  LR+      DS       ++ +D  + + D
Sbjct: 304 ANATNWLKENPATAKEIEKKLRELLLNNQDSTPDFSVDDSGEDVKETNED 353


>gi|116119152|gb|ABJ74746.1| RecA [Burkholderia sp. M279]
          Length = 347

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 233/350 (66%), Positives = 296/350 (84%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 2   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 121 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 241 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ G+VA   + +  +N  +  D+++
Sbjct: 301 GKDNAREFLRENPEIAREIENRIRESLGVVA---MPDGVVNEAEAMDEEE 347


>gi|154488807|ref|ZP_02029656.1| hypothetical protein BIFADO_02115 [Bifidobacterium adolescentis
           L2-32]
 gi|154082944|gb|EDN81989.1| hypothetical protein BIFADO_02115 [Bifidobacterium adolescentis
           L2-32]
          Length = 380

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 208/358 (58%), Positives = 278/358 (77%), Gaps = 6/358 (1%)

Query: 4   RKEMNIVD--KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
            K  N +D  +  AL+ AL+Q+++ +GKG+ M+LG +    + +EV+ +GSL LD+ALGI
Sbjct: 13  NKSANGIDPRRQAALDTALAQVEKSFGKGSAMRLGDRPE--QDVEVIPTGSLALDMALGI 70

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG PKGRIVEIYGPESSGKTTLALH +A +QK GG  AF+DAEHALD +YARKLGVD  +
Sbjct: 71  GGLPKGRIVEIYGPESSGKTTLALHVVANAQKAGGVAAFIDAEHALDPVYARKLGVDTDS 130

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQ
Sbjct: 131 LIVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQ 190

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRK+T +++++    +FINQ+R KIGV FG+PETTTGG ALKFY+SVR+DIRR+ +IK+
Sbjct: 191 ALRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRMDIRRIQTIKN 250

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            D   GN+T+VKVVKNKMA PFK  EFD++YGEGIS  G ++D+ ++A++V KSG+WF++
Sbjct: 251 GDEAVGNRTKVKVVKNKMAPPFKTAEFDVLYGEGISKEGSVLDMALQANVVKKSGSWFTY 310

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLV--ADSLLQEPAINTKDDADKD 357
           +G +LGQGREN + FL++N E+ E IE+ ++   GL+   D   ++        A  D
Sbjct: 311 EGDQLGQGRENVRQFLKDNPELTEEIENKVKAAFGLIKPTDQFAEDDGAEDAAGAPDD 368


>gi|302385103|ref|YP_003820925.1| recA protein [Clostridium saccharolyticum WM1]
 gi|302195731|gb|ADL03302.1| recA protein [Clostridium saccharolyticum WM1]
          Length = 363

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 212/350 (60%), Positives = 274/350 (78%), Gaps = 1/350 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN  DK KAL+AAL+QI++ YGKG++M+LG  G+    +E V +G+L LDIALG+GG PK
Sbjct: 1   MNKDDKLKALDAALTQIEKAYGKGSVMKLGDSGTNMN-VETVPTGALSLDIALGLGGIPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTT+ALH IA+ QK GG   F+DAEHALD +YA+ +GVD+ NL ISQ
Sbjct: 60  GRVVEIYGPESSGKTTVALHMIAEVQKRGGIAGFIDAEHALDPVYAKSIGVDIDNLYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL
Sbjct: 120 PDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+ IS+S CI++FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLDIR++ ++K    + 
Sbjct: 180 TAIISKSNCIVLFINQLREKVGVMFGSPETTTGGRALKFYASVRLDIRKIETLKQGGDMV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ RVKVVKNK+A PFK+ EFDIM+G+GIS  G+++DL VK +IV+KSGAWF++   ++
Sbjct: 240 GNRVRVKVVKNKIAPPFKEAEFDIMFGKGISKEGDILDLAVKENIVEKSGAWFAYNNIKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           GQGREN+K +L++N      IE+ +R   GL  +      +        K
Sbjct: 300 GQGRENAKTYLQDNPAACMEIENKVRVKYGLHEEGSAAPESGGAAAKESK 349


>gi|116734148|gb|ABK20136.1| RecA [Shigella boydii]
          Length = 348

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 213/348 (61%), Positives = 283/348 (81%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 1   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 58

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 59  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 118

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 119 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 178

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 179 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 238

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 239 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 298

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            N+  +L++N E A+ IE  +R+      +S       +++  A+ ++
Sbjct: 299 ANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVAETNE 346


>gi|70904901|gb|AAZ14028.1| RecA [Burkholderia pyrrocinia]
          Length = 323

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 224/321 (69%), Positives = 281/321 (87%), Gaps = 1/321 (0%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           AL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESS
Sbjct: 1   ALAQIEKQFGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESS 59

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD
Sbjct: 60  GKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITD 119

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++
Sbjct: 120 ALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVI 179

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK
Sbjct: 180 FINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNK 239

Query: 259 MASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLR 318
           ++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLR
Sbjct: 240 VSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLR 299

Query: 319 ENIEIAENIESLLRQNAGLVA 339
           EN EIA  IE+ +R++ G+VA
Sbjct: 300 ENPEIAREIENRIRESLGVVA 320


>gi|229512812|ref|ZP_04402279.1| RecA protein [Vibrio cholerae TMA 21]
 gi|229350061|gb|EEO15014.1| RecA protein [Vibrio cholerae TMA 21]
          Length = 354

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 209/345 (60%), Positives = 274/345 (79%), Gaps = 2/345 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTG
Sbjct: 62  EIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            N+  +L+EN EIA+ ++  LR+      +  L     +  DD +
Sbjct: 302 ANACKYLKENPEIAKTLDKKLREMLLNPENMQLIGETSSAADDVE 346


>gi|310766670|gb|ADP11620.1| Recombinase A [Erwinia sp. Ejp617]
          Length = 355

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 213/352 (60%), Positives = 277/352 (78%), Gaps = 2/352 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++T
Sbjct: 184 KNSGTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+ +GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQIMYGEGINIYGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
            N+  FL+EN  IA  I++ LR       D          + DA+ +  +++
Sbjct: 304 ANAGNFLKENPAIANEIDAKLRAMLLGNQDDKPDFVPAAHEVDAESEANESL 355


>gi|289550923|ref|YP_003471827.1| RecA protein [Staphylococcus lugdunensis HKU09-01]
 gi|289180455|gb|ADC87700.1| RecA protein [Staphylococcus lugdunensis HKU09-01]
          Length = 348

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 203/347 (58%), Positives = 265/347 (76%), Gaps = 2/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+  +  +++ +GKGA+M+LG        +  VS+GS+ LD ALG+GG+PKGRI+
Sbjct: 4   DRQKALDTVIKNMEKSFGKGAVMKLGDNKGRR--VSSVSTGSVTLDNALGVGGYPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD  YA  LGVD+ NL +SQPD G
Sbjct: 62  EIYGPESSGKTTVALHAIAEVQKNGGIAAFIDAEHALDPEYAAALGVDIDNLYLSQPDHG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI +  VRSGAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 122 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S    +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T
Sbjct: 182 SKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G R+GQG+
Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGQGISKEGELIDLGVEHDIVDKSGAWYSYNGDRMGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           EN K +L+EN E+ ++I+  LR+  G+    + ++ A   +   D++
Sbjct: 302 ENVKTYLKENPEVRDDIDRKLREKLGIFDGDVEEKEAKAPESLFDEE 348


>gi|259507462|ref|ZP_05750362.1| recombinase A [Corynebacterium efficiens YS-314]
 gi|259164950|gb|EEW49504.1| recombinase A [Corynebacterium efficiens YS-314]
          Length = 401

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 215/357 (60%), Positives = 273/357 (76%), Gaps = 11/357 (3%)

Query: 1   MDYRKEMNIV----DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLD 56
           M  +K         D+ KAL+AAL+ I++ +GKGA+M+LG +      I+V+SSG+  LD
Sbjct: 16  MATKKTTKAAPKGDDRQKALDAALALIEKDFGKGAVMRLGDENR--PPIQVISSGNTALD 73

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
           IALGIGGFP+GRIVE+YGPESSGKTT+ALH IAQ+QK GG  AF+DAEHALD  YARKLG
Sbjct: 74  IALGIGGFPRGRIVEVYGPESSGKTTVALHAIAQAQKAGGIAAFIDAEHALDPDYARKLG 133

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           VD   LL+SQPDTGEQALEI DMLVRSGA+DI+VIDSVAALTP+AEIEG+MG+S  G+QA
Sbjct: 134 VDTDALLVSQPDTGEQALEIADMLVRSGAIDILVIDSVAALTPKAEIEGEMGDSHVGLQA 193

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           RLMSQALRK+T ++  S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+
Sbjct: 194 RLMSQALRKMTGALYNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRIDVRRI 253

Query: 237 GSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
            ++KD     GN+TR K+VKNK++ PFK  EFDI+YGEGIS    +IDL V   IV KSG
Sbjct: 254 QTLKDGQDAIGNRTRAKIVKNKVSPPFKIAEFDIIYGEGISRESSIIDLAVDNGIVKKSG 313

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL-----VADSLLQEPAI 348
           +WF+++G +LGQG+E +++FL+E  E+A+ IE  + +  G+      AD L  +P  
Sbjct: 314 SWFTYEGDQLGQGKEKARLFLKETPELADEIEEKIFRKLGVGKFAQTADELTDDPVE 370


>gi|121536015|ref|ZP_01667805.1| recA protein [Thermosinus carboxydivorans Nor1]
 gi|121305405|gb|EAX46357.1| recA protein [Thermosinus carboxydivorans Nor1]
          Length = 345

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 213/345 (61%), Positives = 268/345 (77%), Gaps = 1/345 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK KALE A+ QI++ +GKG+IM+LG   +    +EV+ +G L LDIALG+GG P+GR+
Sbjct: 1   MDKLKALENAMRQIEKEFGKGSIMRLGEAAAKMN-VEVIPTGCLALDIALGVGGIPRGRV 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYG ESSGKTT+ALH IAQ+QK GG  AF+DAEHALD IYA+KLGVD +NLLISQPD 
Sbjct: 60  VEIYGHESSGKTTVALHMIAQAQKMGGIAAFIDAEHALDPIYAKKLGVDTENLLISQPDN 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+DIIV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  
Sbjct: 120 GEQALEIADALVRSGAIDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGI 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S+   +FINQ+R K+GVMFG+PETTTGG ALKFY+SVRL++R+  +IK    + G++
Sbjct: 180 ISKSRTTAIFINQIREKVGVMFGNPETTTGGRALKFYASVRLEVRKAEAIKQGSEVIGSR 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TR+KVVKNK+A PF+Q EFDIMYGEGIS  G L+D+G +  I+ KSG+W+S+K  RLGQG
Sbjct: 240 TRIKVVKNKVAPPFRQAEFDIMYGEGISREGSLVDIGTELDIITKSGSWYSYKDSRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           +EN K +L+EN  IAE IE  +R+     A  L      +   D 
Sbjct: 300 KENVKEYLKENPHIAEEIEMKIREALTGGAIKLTTSAVDDIAVDE 344


>gi|157326967|gb|ABV44596.1| RecA [Burkholderia multivorans]
          Length = 319

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 224/320 (70%), Positives = 280/320 (87%), Gaps = 1/320 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPES
Sbjct: 1   AALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPES 59

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEIT
Sbjct: 60  SGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEIT 119

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C++
Sbjct: 120 DALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLV 179

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKN
Sbjct: 180 IFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKN 239

Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317
           K++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FL
Sbjct: 240 KVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFL 299

Query: 318 RENIEIAENIESLLRQNAGL 337
           REN EIA  IE+ +R++ G+
Sbjct: 300 RENPEIAREIENRIRESLGV 319


>gi|70904880|gb|AAZ14018.1| RecA [Burkholderia cenocepacia]
          Length = 324

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 225/323 (69%), Positives = 280/323 (86%), Gaps = 1/323 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
            AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPE
Sbjct: 1   AAALAQIEKQFGKGSIMRMGD-GEAKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEI
Sbjct: 60  SSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+
Sbjct: 120 TDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCL 179

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVK
Sbjct: 180 VIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVK 239

Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316
           NK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ F
Sbjct: 240 NKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREF 299

Query: 317 LRENIEIAENIESLLRQNAGLVA 339
           LREN EIA  IE+ +R++ G+ A
Sbjct: 300 LRENPEIALEIENRIRESLGVAA 322


>gi|22124791|ref|NP_668214.1| recombinase A [Yersinia pestis KIM 10]
 gi|45440236|ref|NP_991775.1| recombinase A [Yersinia pestis biovar Microtus str. 91001]
 gi|108808829|ref|YP_652745.1| recombinase A [Yersinia pestis Antiqua]
 gi|108810952|ref|YP_646719.1| recombinase A [Yersinia pestis Nepal516]
 gi|153997646|ref|ZP_02022746.1| RecA protein [Yersinia pestis CA88-4125]
 gi|162419049|ref|YP_001605468.1| recombinase A [Yersinia pestis Angola]
 gi|165925676|ref|ZP_02221508.1| protein RecA [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165936616|ref|ZP_02225183.1| protein RecA [Yersinia pestis biovar Orientalis str. IP275]
 gi|166010064|ref|ZP_02230962.1| protein RecA [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166212913|ref|ZP_02238948.1| protein RecA [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167399039|ref|ZP_02304563.1| protein RecA [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167421670|ref|ZP_02313423.1| protein RecA [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167423840|ref|ZP_02315593.1| protein RecA [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167467646|ref|ZP_02332350.1| protein RecA [Yersinia pestis FV-1]
 gi|170025590|ref|YP_001722095.1| recombinase A [Yersinia pseudotuberculosis YPIII]
 gi|218930328|ref|YP_002348203.1| recombinase A [Yersinia pestis CO92]
 gi|229838927|ref|ZP_04459086.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229896408|ref|ZP_04511576.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Yersinia pestis Pestoides A]
 gi|229899494|ref|ZP_04514635.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229901168|ref|ZP_04516291.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Yersinia pestis Nepal516]
 gi|270489351|ref|ZP_06206425.1| RecA protein [Yersinia pestis KIM D27]
 gi|294505019|ref|YP_003569081.1| recombinase A [Yersinia pestis Z176003]
 gi|17380548|sp|P37858|RECA_YERPE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|122979436|sp|Q1C422|RECA_YERPA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123373418|sp|Q1CLL1|RECA_YERPN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238687266|sp|A9R0V9|RECA_YERPG RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238688430|sp|B1JJA2|RECA_YERPY RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|21957615|gb|AAM84465.1|AE013691_4 DNA-dependent ATPase, DNA- and ATP-dependent coprotease [Yersinia
           pestis KIM 10]
 gi|45435092|gb|AAS60652.1| RecA protein [Yersinia pestis biovar Microtus str. 91001]
 gi|108774600|gb|ABG17119.1| RecA protein [Yersinia pestis Nepal516]
 gi|108780742|gb|ABG14800.1| RecA protein [Yersinia pestis Antiqua]
 gi|115348939|emb|CAL21898.1| RecA protein [Yersinia pestis CO92]
 gi|149289283|gb|EDM39363.1| RecA protein [Yersinia pestis CA88-4125]
 gi|162351864|gb|ABX85812.1| protein RecA [Yersinia pestis Angola]
 gi|165915265|gb|EDR33875.1| protein RecA [Yersinia pestis biovar Orientalis str. IP275]
 gi|165922288|gb|EDR39465.1| protein RecA [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165990971|gb|EDR43272.1| protein RecA [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166205700|gb|EDR50180.1| protein RecA [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166960589|gb|EDR56610.1| protein RecA [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167051543|gb|EDR62951.1| protein RecA [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167058010|gb|EDR67756.1| protein RecA [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|169752124|gb|ACA69642.1| recA protein [Yersinia pseudotuberculosis YPIII]
 gi|229681893|gb|EEO77986.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Yersinia pestis Nepal516]
 gi|229686986|gb|EEO79061.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229695293|gb|EEO85340.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229700482|gb|EEO88513.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Yersinia pestis Pestoides A]
 gi|262363082|gb|ACY59803.1| recombinase A [Yersinia pestis D106004]
 gi|262367008|gb|ACY63565.1| recombinase A [Yersinia pestis D182038]
 gi|270337855|gb|EFA48632.1| RecA protein [Yersinia pestis KIM D27]
 gi|294355478|gb|ADE65819.1| recombinase A [Yersinia pestis Z176003]
 gi|320016501|gb|ADW00073.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 356

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 217/353 (61%), Positives = 278/353 (78%), Gaps = 3/353 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGDVVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N+  +L+EN  IA  ++  LR+   L   +  Q  A  T + AD  D  N E
Sbjct: 304 ANASNYLKENPAIAAELDKKLREML-LNGGNGEQPVAAATAEFADGADETNEE 355


>gi|54294688|ref|YP_127103.1| RecA protein [Legionella pneumophila str. Lens]
 gi|59798134|sp|Q5WVQ0|RECA_LEGPL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|53754520|emb|CAH16004.1| RecA protein [Legionella pneumophila str. Lens]
          Length = 348

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 221/346 (63%), Positives = 282/346 (81%), Gaps = 1/346 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AALSQI+R +GKG++M++G   ++   IE +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKQKALSAALSQIERQFGKGSVMRMGD-STVSRDIEAISTGSLGLDIALGIGGLPKGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA+KLGV +  LL+SQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAECQKMGGTAAFIDAEHALDPSYAQKLGVKVDELLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+++IDSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 123 EQALEITDMLVRSAAVDVVIIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  + I G++T
Sbjct: 183 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGEEILGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK  EFDI+Y EGIS   E+I+LGV+ ++++KSGAW+S+K +++GQG+
Sbjct: 243 RVKVVKNKVAPPFKMTEFDILYNEGISRESEIINLGVQLNLIEKSGAWYSYKQEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           EN +++L+EN ++A  +E  +R        S+L   + +  +  D 
Sbjct: 303 ENVRLYLKENPQVAAELEQQIRTELLEKKLSVLASASEDLFETIDD 348


>gi|317129135|ref|YP_004095417.1| recA protein [Bacillus cellulosilyticus DSM 2522]
 gi|315474083|gb|ADU30686.1| recA protein [Bacillus cellulosilyticus DSM 2522]
          Length = 349

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 212/349 (60%), Positives = 271/349 (77%), Gaps = 2/349 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+ +AL+ AL QI++ +GKG+IM+LG Q    + +  VSSG+L LDIALG+GG+PKGR
Sbjct: 1   MSDRKQALDMALRQIEKQFGKGSIMKLGEQAE--QRVSTVSSGALALDIALGVGGYPKGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTT+ALH IA++Q+ GG  AF+DAEHALD IYA+KLGV++  LL+SQPD
Sbjct: 59  IIEIYGPESSGKTTVALHAIAETQRNGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDI+VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR  ++K  + + GN
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK+A PF+  E DIMYGEGIS  G L+D+     IV KSGAW+S+  +RLGQ
Sbjct: 239 KTKIKVVKNKVAPPFRTAEVDIMYGEGISREGSLLDIASDLDIVQKSGAWYSYNEERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           GRENSK FL+EN EI   IE  +R+   L    +  E      +D   D
Sbjct: 299 GRENSKQFLKENEEITLAIEKQIREYHSLDTPKVAPEDDEKMPEDLALD 347


>gi|224551677|gb|ACN54238.1| RecA [Burkholderia sp. LWAT8]
          Length = 331

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 226/323 (69%), Positives = 281/323 (86%), Gaps = 1/323 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
            AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPE
Sbjct: 1   AAALAQIEKQFGKGSIMRMGD-GDATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEI
Sbjct: 60  SSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+
Sbjct: 120 TDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCL 179

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVK
Sbjct: 180 VIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVK 239

Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316
           NK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ F
Sbjct: 240 NKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREF 299

Query: 317 LRENIEIAENIESLLRQNAGLVA 339
           LREN EIA  IE+ +R++ G+VA
Sbjct: 300 LRENPEIAREIENRIRESLGVVA 322


>gi|31540563|gb|AAP49244.1| RecA [Mycobacterium porcinum]
          Length = 323

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 204/320 (63%), Positives = 264/320 (82%), Gaps = 2/320 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 6   PDREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 64  VEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 124 GEQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+
Sbjct: 184 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG
Sbjct: 244 TRVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQG 303

Query: 310 RENSKIFLRENIEIAENIES 329
           +EN++ FL EN+++A  IE 
Sbjct: 304 KENARKFLLENVDVANEIEK 323


>gi|326803744|ref|YP_004321562.1| RecA protein [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651270|gb|AEA01453.1| RecA protein [Aerococcus urinae ACS-120-V-Col10a]
          Length = 371

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 203/354 (57%), Positives = 266/354 (75%), Gaps = 2/354 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            ++ KAL+ AL QI++ +GKGAIM++G        +  V SGSL LDIALG+GG+P+GRI
Sbjct: 7   ANRQKALDQALKQIEKNFGKGAIMKMGESTDT--QVSTVPSGSLSLDIALGVGGYPRGRI 64

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +E+YGPESSGKTT+ALH +A+ QK GG  AF+DAE+ALD  YAR LGVD+  LL+SQPDT
Sbjct: 65  IEVYGPESSGKTTVALHAVAEVQKQGGIAAFIDAENALDPEYARALGVDIDELLLSQPDT 124

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQ LEI D LV SGA+DI+V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL+ S
Sbjct: 125 GEQGLEIADALVSSGAIDIVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGS 184

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I+++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK    I GN+
Sbjct: 185 INKTKTIAMFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRGERIKSGQDIIGNR 244

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           T++KVVKNK+A PFK  E DIMYG+GIS  GEL+DL     I+ KSG+W+S+   R+GQG
Sbjct: 245 TKIKVVKNKVAPPFKVAEVDIMYGQGISQAGELVDLAADMDIIKKSGSWYSYGDDRIGQG 304

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           REN+K++L EN +I + I+S +R   G        +    T ++  K+D+ + E
Sbjct: 305 RENAKLYLTENPDIFKEIDSKVRAEYGFGPAVEDDDSEDETTNEEAKNDSSSDE 358


>gi|109453454|gb|ABG34207.1| RecA [Salmonella enterica subsp. diarizonae]
          Length = 353

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 213/348 (61%), Positives = 281/348 (80%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            N+  +L+EN   A+ IE  +R+      DS       +++  A+ ++
Sbjct: 304 ANATTWLKENPATAKEIEKKVRELLLSNQDSTPDFAVDDSEGVAETNE 351


>gi|25028405|ref|NP_738459.1| recombinase A [Corynebacterium efficiens YS-314]
 gi|30173308|sp|Q8FPD3|RECA_COREF RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|23493690|dbj|BAC18659.1| recombination protein RecA [Corynebacterium efficiens YS-314]
          Length = 386

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 215/357 (60%), Positives = 273/357 (76%), Gaps = 11/357 (3%)

Query: 1   MDYRKEMNIV----DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLD 56
           M  +K         D+ KAL+AAL+ I++ +GKGA+M+LG +      I+V+SSG+  LD
Sbjct: 1   MATKKTTKAAPKGDDRQKALDAALALIEKDFGKGAVMRLGDENR--PPIQVISSGNTALD 58

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
           IALGIGGFP+GRIVE+YGPESSGKTT+ALH IAQ+QK GG  AF+DAEHALD  YARKLG
Sbjct: 59  IALGIGGFPRGRIVEVYGPESSGKTTVALHAIAQAQKAGGIAAFIDAEHALDPDYARKLG 118

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           VD   LL+SQPDTGEQALEI DMLVRSGA+DI+VIDSVAALTP+AEIEG+MG+S  G+QA
Sbjct: 119 VDTDALLVSQPDTGEQALEIADMLVRSGAIDILVIDSVAALTPKAEIEGEMGDSHVGLQA 178

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           RLMSQALRK+T ++  S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+
Sbjct: 179 RLMSQALRKMTGALYNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRIDVRRI 238

Query: 237 GSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
            ++KD     GN+TR K+VKNK++ PFK  EFDI+YGEGIS    +IDL V   IV KSG
Sbjct: 239 QTLKDGQDAIGNRTRAKIVKNKVSPPFKIAEFDIIYGEGISRESSIIDLAVDNGIVKKSG 298

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL-----VADSLLQEPAI 348
           +WF+++G +LGQG+E +++FL+E  E+A+ IE  + +  G+      AD L  +P  
Sbjct: 299 SWFTYEGDQLGQGKEKARLFLKETPELADEIEEKIFRKLGVGKFAQTADELTDDPVE 355


>gi|126652531|ref|ZP_01724696.1| RecA [Bacillus sp. B14905]
 gi|126590659|gb|EAZ84775.1| RecA [Bacillus sp. B14905]
          Length = 353

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 210/333 (63%), Positives = 268/333 (80%), Gaps = 2/333 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  ALE AL QI++ +GKG+IM+LG +  +   I   SSGSL LD ALG+GG+P+GR
Sbjct: 1   MSDRKAALEQALKQIEKNFGKGSIMKLGEKTDL--EIATSSSGSLALDAALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT+ALH IA+ Q  GG  AF+DAEHALD IYA+KLGV++  LL+SQPD
Sbjct: 59  IIEVYGPESSGKTTVALHAIAEVQARGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGA+DIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           SI++SK I +FINQ+R KIGVMFG+PETT GG ALKFYSSVRL++RR  +IK  + I GN
Sbjct: 179 SINKSKTIAIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEAIKQGNDIVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++K+VKNK+A PF+  E DIMYGEGIS  GE +DLGV+  IV KSG+W+++  +RLGQ
Sbjct: 239 RTKIKIVKNKVAPPFRTAEVDIMYGEGISKEGETVDLGVELDIVQKSGSWYAYGDERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           GREN+K +L+EN  + E I + +R + G+ A+S
Sbjct: 299 GRENAKQYLKENTAVLEEISNKIRSSYGIAANS 331


>gi|237908825|gb|ACR33788.1| RecA [Burkholderia caribensis]
          Length = 319

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 221/320 (69%), Positives = 279/320 (87%), Gaps = 1/320 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
            AAL+QI++ +GKG++M+LG QG   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPE
Sbjct: 1   AAALAQIEKQFGKGSVMRLG-QGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  +A+ QK GGT AF+DAEHALD  YA+KLGV++ +LL+SQPDTGEQALEI
Sbjct: 60  SSGKTTLTLQVVAEMQKVGGTAAFIDAEHALDIQYAQKLGVNVSDLLVSQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+
Sbjct: 120 ADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCL 179

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVK
Sbjct: 180 VIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVK 239

Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316
           NK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G R+GQG++N++ F
Sbjct: 240 NKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGDRIGQGKDNAREF 299

Query: 317 LRENIEIAENIESLLRQNAG 336
           LREN +IA  IE+ +R++ G
Sbjct: 300 LRENPDIAREIENRIRESLG 319


>gi|37680989|ref|NP_935598.1| recombinase A [Vibrio vulnificus YJ016]
 gi|37199739|dbj|BAC95569.1| RecA recombinase [Vibrio vulnificus YJ016]
          Length = 369

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 209/357 (58%), Positives = 285/357 (79%), Gaps = 3/357 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           DY + +   +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG 
Sbjct: 15  DYLERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 72

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  
Sbjct: 73  GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDQ 132

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 133 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 192

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 193 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 252

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            D + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +++KSGAW+S+
Sbjct: 253 GDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKCKLIEKSGAWYSY 312

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            G ++GQG+ N+  +L+EN+++A+ +++ LR+   L   ++  E A   ++  ++++
Sbjct: 313 NGDKIGQGKANACKYLKENVDVAKVLDTKLREML-LSPANINDESAELVEEMPEQEE 368


>gi|146328886|ref|YP_001209208.1| DNA recombination protein RecA [Dichelobacter nodosus VCS1703A]
 gi|166220643|sp|A5EW90|RECA_DICNV RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|146232356|gb|ABQ13334.1| DNA recombination protein RecA [Dichelobacter nodosus VCS1703A]
          Length = 350

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 216/351 (61%), Positives = 283/351 (80%), Gaps = 2/351 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             ++ KAL A L+Q+ + +GKG +M+LG Q +    I+ +S+GSL LDIALGIGG PKGR
Sbjct: 2   NEEQKKALTAVLTQLDKQFGKGTVMRLGEQVAAH-DIQAISTGSLTLDIALGIGGLPKGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEIYGPESSGKTT+ LH IA++QK GGT AF+DAEHALD IYARKLGV+  +L ++QPD
Sbjct: 61  IVEIYGPESSGKTTMMLHVIAEAQKNGGTAAFIDAEHALDPIYARKLGVNTDDLYVTQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI D LVRSGA D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT 
Sbjct: 121 TGEQALEICDALVRSGAFDVIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+  ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIK+ D + GN
Sbjct: 181 NIKRANTLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRIGSIKEGDEVLGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFKQ EFDI+YG+G+S  GE+I L V A I+ KSGAW+S++ +++GQ
Sbjct: 241 ETRVKVVKNKVAPPFKQAEFDILYGQGVSREGEIIQLAVNADIMQKSGAWYSYRDEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           G+E  +++L+E+ ++A+ IE+ +R+   +  +  L + A +  D +  D+ 
Sbjct: 301 GKEKVRLYLKEHPDVAQEIETKIREKF-IGGELHLPDAAGDEIDTSINDEE 350


>gi|197284275|ref|YP_002150147.1| recombinase A [Proteus mirabilis HI4320]
 gi|132231|sp|P11406|RECA_PROMI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238693164|sp|B4EUV6|RECA_PROMH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|45632|emb|CAA33015.1| unnamed protein product [Proteus mirabilis]
 gi|194681762|emb|CAR40963.1| protein RecA (recombinase A) [Proteus mirabilis HI4320]
          Length = 355

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 215/352 (61%), Positives = 277/352 (78%), Gaps = 3/352 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P+GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--NVETISTGSLSLDVALGAGGLPRGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G  CAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIASAQREGKICAFIDAEHALDPIYAQKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEIGDSHVGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GS+K+ D + G++T
Sbjct: 184 KNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKNGDEVIGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+ +GELIDLGVK  +V+K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQIMYGEGINTYGELIDLGVKHKLVEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA-INTKDDADKDDTDN 361
            N+  +L+E+ E+   + + LR+     A            + D+D DDT  
Sbjct: 304 ANATNYLKEHPEMYNELNTKLREMLLNHAGEFTSAADFAGEESDSDADDTKE 355


>gi|31540547|gb|AAP49236.1| RecA [Mycobacterium fortuitum]
          Length = 322

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 204/319 (63%), Positives = 264/319 (82%), Gaps = 2/319 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 6   PDREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 64  VEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 124 GEQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+
Sbjct: 184 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG
Sbjct: 244 TRVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQG 303

Query: 310 RENSKIFLRENIEIAENIE 328
           +EN++ FL EN+++A  IE
Sbjct: 304 KENARKFLLENVDVANEIE 322


>gi|242133662|gb|ACS87942.1| RecA [Burkholderia cepacia]
 gi|254575560|gb|ACT68294.1| RecA [Burkholderia cepacia]
          Length = 346

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 232/350 (66%), Positives = 296/350 (84%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 120 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 180 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 240 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ G+VA   + +  +N  +  D+++
Sbjct: 300 GKDNAREFLRENPEIAREIENRIRESLGVVA---MPDGVVNEAEAMDEEE 346


>gi|258511453|ref|YP_003184887.1| recA protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478179|gb|ACV58498.1| recA protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 355

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 208/335 (62%), Positives = 269/335 (80%), Gaps = 2/335 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + DK  ALE AL +I++ +GKG+IM+LG   ++   +E V +GS+ LDIALG+GG P+GR
Sbjct: 1   MGDKKAALEQALRKIEKEFGKGSIMRLGEAAAMT--VETVPTGSIALDIALGVGGLPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEIYGPESSGKTT+ALH +A+ QK GG  AF+DAEHALD +YA+KLGV++  LLISQPD
Sbjct: 59  IVEIYGPESSGKTTVALHVVAEVQKLGGQAAFIDAEHALDPVYAQKLGVNIDELLISQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVD+IV+DSVAAL P+ E+EGDMG+S  G+QARLMSQALRKL  
Sbjct: 119 TGEQALEIAEALVRSGAVDVIVVDSVAALVPKNELEGDMGDSHVGLQARLMSQALRKLAG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +IS+SK I +FINQ+R K+GVMFG+PETTTGG ALKFY+SVRL++RRV +IK  + + G+
Sbjct: 179 AISKSKTIAIFINQIREKVGVMFGNPETTTGGRALKFYASVRLEVRRVEAIKQGNDVVGS 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TR+KVVKNK+A PF+Q + DIM+GEGIS  G LID+  +  +V KSGAW+SF  +RLGQ
Sbjct: 239 RTRIKVVKNKVAPPFRQCDVDIMFGEGISREGSLIDIATEIDVVQKSGAWYSFGEERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343
           GREN+K +L+E+ EIAE IE+ +R+   +     L
Sbjct: 299 GRENAKQYLKEHPEIAEQIEAAVREYFHVNPAKPL 333


>gi|242133680|gb|ACS87951.1| RecA [Burkholderia cepacia]
          Length = 346

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 233/350 (66%), Positives = 295/350 (84%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 120 TGEQALEITDALVRSGSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 180 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 240 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ G+V+   + +   N  +  D+++
Sbjct: 300 GKDNAREFLRENPEIAREIENRIRESLGVVS---MPDGVANEAEAMDEEE 346


>gi|90416732|ref|ZP_01224662.1| recombinase A [marine gamma proteobacterium HTCC2207]
 gi|90331485|gb|EAS46721.1| recombinase A [marine gamma proteobacterium HTCC2207]
          Length = 340

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 228/347 (65%), Positives = 282/347 (81%), Gaps = 9/347 (2%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +KSKALEAAL QI+R +GKG +M++G      + I  +S+GSLGLDIALGIGG PKGRI
Sbjct: 3   ANKSKALEAALGQIERQFGKGTVMRMGE--GTRQAIPAISTGSLGLDIALGIGGLPKGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTL L  IA++QK GGTCAF+DAEHALD +YA KLGV + +L++SQPDT
Sbjct: 61  VEIYGPESSGKTTLTLQVIAEAQKAGGTCAFIDAEHALDPVYAEKLGVSVDDLIVSQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALE+TDMLVRSGA D++V+DSVAALTPRAEIEGDMG+   G+QARLMSQALRKLT +
Sbjct: 121 GEQALEVTDMLVRSGACDVLVVDSVAALTPRAEIEGDMGDHHVGLQARLMSQALRKLTGN 180

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I  + C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G++KD D I GN+
Sbjct: 181 IKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAVKDGDEIVGNE 240

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQ EF I+YG GI+  GEL+DLGVK  ++DKSGAW+++KG ++GQG
Sbjct: 241 TRVKVVKNKVAPPFKQTEFQILYGRGINRNGELVDLGVKNGLIDKSGAWYAYKGSKIGQG 300

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           + N  I+L EN EIA  IE+++R+         +  PA   K+  +K
Sbjct: 301 KANVGIYLTENPEIAAEIEAMIREK-------EMGGPAPVAKESVEK 340


>gi|52842028|ref|YP_095827.1| recombinase A [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|54297714|ref|YP_124083.1| recombinase A [Legionella pneumophila str. Paris]
 gi|148359347|ref|YP_001250554.1| DNA recombination protein RecA [Legionella pneumophila str. Corby]
 gi|296107394|ref|YP_003619094.1| recombination protein RecA [Legionella pneumophila 2300/99 Alcoy]
 gi|59798138|sp|Q5X4B5|RECA_LEGPA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|59798152|sp|Q5ZUJ7|RECA_LEGPH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166220654|sp|A5ICV8|RECA_LEGPC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|13186174|emb|CAC33484.1| RecA protein [Legionella pneumophila]
 gi|52629139|gb|AAU27880.1| RecA bacterial DNA recombination protein [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|53751499|emb|CAH12917.1| RecA protein [Legionella pneumophila str. Paris]
 gi|148281120|gb|ABQ55208.1| RecA bacterial DNA recombination protein [Legionella pneumophila
           str. Corby]
 gi|165968102|gb|ABY75873.1| RecA protein [Legionella pneumophila 2300/99 Alcoy]
 gi|295649295|gb|ADG25142.1| recombination protein RecA [Legionella pneumophila 2300/99 Alcoy]
 gi|307610503|emb|CBX00085.1| RecA protein [Legionella pneumophila 130b]
          Length = 348

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 221/346 (63%), Positives = 282/346 (81%), Gaps = 1/346 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AALSQI+R +GKG++M++G   ++   IE +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKQKALSAALSQIERQFGKGSVMRMGD-STVSRDIEAISTGSLGLDIALGIGGLPKGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA+KLGV +  LL+SQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAECQKMGGTAAFIDAEHALDPSYAQKLGVKVDELLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+++IDSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 123 EQALEITDMLVRSAAVDVVIIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  + I G++T
Sbjct: 183 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGEEILGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK  EFDI+Y EGIS   E+I+LGV+ ++++KSGAW+S+K +++GQG+
Sbjct: 243 RVKVVKNKVAPPFKMTEFDILYNEGISRESEIINLGVQLNLIEKSGAWYSYKQEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           EN +++L+EN ++A  +E  +R        S+L   + +  +  D 
Sbjct: 303 ENVRLYLKENPQVAAELEQQIRTELLEKKLSVLASSSEDLFETIDD 348


>gi|160880571|ref|YP_001559539.1| recA protein [Clostridium phytofermentans ISDg]
 gi|160429237|gb|ABX42800.1| recA protein [Clostridium phytofermentans ISDg]
          Length = 347

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 205/331 (61%), Positives = 269/331 (81%), Gaps = 1/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   DK KALE+AL+QI++ YGKG++M+LG  G+    +E V +GS+ LDIALG+GG PK
Sbjct: 1   MANEDKIKALESALAQIEKQYGKGSVMKLGETGTRMN-VETVPTGSISLDIALGLGGIPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE+YGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YA+ +GVD+ NL ISQ
Sbjct: 60  GRVVEVYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+GDMG+S  G+QARLMSQALRKL
Sbjct: 120 PDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+ IS+S CI++FINQ+R K+GVMFG+PETTTGG ALKFYSS+RLD+RR+ ++K    I 
Sbjct: 180 TAVISKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYSSIRLDVRRIEALKLGGDIV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR+KVVKNK+A PFK+ EFDIM+G+GIS  G+++DL     I+ KSGAW+++   ++
Sbjct: 240 GNRTRIKVVKNKIAPPFKEAEFDIMFGQGISREGDILDLAANEGIIVKSGAWYAYNESKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQGREN+K+FL+EN  I E +E  +R+   L
Sbjct: 300 GQGRENAKVFLKENPNILEEVEVQVRERHNL 330


>gi|218710547|ref|YP_002418168.1| hypothetical protein VS_2596 [Vibrio splendidus LGP32]
 gi|218323566|emb|CAV19787.1| Protein recA (Recombinase A) [Vibrio splendidus LGP32]
          Length = 350

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 213/323 (65%), Positives = 270/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 8   NKQKALAAALGQIEKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIV 65

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL L  IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTG
Sbjct: 66  EVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTG 125

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 126 EQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 185

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+T
Sbjct: 186 KQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNET 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +V+K+GAW+S+KG ++GQG+
Sbjct: 246 RIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKNKLVEKAGAWYSYKGDKIGQGK 305

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +LREN E+A  I++ LR+
Sbjct: 306 ANAGKYLRENPEVALEIDTKLRE 328


>gi|331091027|ref|ZP_08339869.1| recA [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330405249|gb|EGG84785.1| recA [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 340

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 196/341 (57%), Positives = 270/341 (79%), Gaps = 1/341 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   DK KAL+AA+S++++ +GKG +M+LG  G+    +E V +GSL LDIALG+GG PK
Sbjct: 1   MATDDKLKALDAAISKLEKDFGKGTVMKLGDAGANV-SVETVPTGSLSLDIALGLGGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++E+YGPESSGKTT+ LH IA+ QK GG   F+DAEHALD +YA+ +GVD+  L ISQ
Sbjct: 60  GRVIEVYGPESSGKTTVTLHMIAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDELYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+G+QALEI + +VRSGA+DI+VIDSVAAL P+ EIEGDMG+S  G+QARLMSQALRKL
Sbjct: 120 PDSGDQALEIAETMVRSGAMDIVVIDSVAALVPKQEIEGDMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T  IS+S C+++FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+D+RR+ ++K    + 
Sbjct: 180 TPVISKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASVRMDVRRIETLKQSGEMV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR+K+VKNK+A PFK+ EFDIM+G+GIS  G+++DL     +V+KSG+W+++ G+++
Sbjct: 240 GNRTRIKIVKNKIAPPFKEAEFDIMFGKGISKEGDVLDLATGIDLVNKSGSWYAYNGEKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           GQGREN+K +L  + EI E +E+ +R++ GL      +E  
Sbjct: 300 GQGRENAKTYLHTHPEIMEELEAKVREHYGLGVTKEDKEEK 340


>gi|52080299|ref|YP_079090.1| recombinase A [Bacillus licheniformis ATCC 14580]
 gi|52785676|ref|YP_091505.1| recombinase A [Bacillus licheniformis ATCC 14580]
 gi|319645920|ref|ZP_08000150.1| RecA protein [Bacillus sp. BT1B_CT2]
 gi|60392990|sp|P62211|RECA_BACLI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|76363320|sp|Q65JF2|RECA_BACLD RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|46019685|emb|CAD54116.1| RecA protein [Bacillus licheniformis]
 gi|52003510|gb|AAU23452.1| multifunctional SOS repair regulator [Bacillus licheniformis ATCC
           14580]
 gi|52348178|gb|AAU40812.1| RecA [Bacillus licheniformis ATCC 14580]
 gi|317391670|gb|EFV72467.1| RecA protein [Bacillus sp. BT1B_CT2]
          Length = 348

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 212/349 (60%), Positives = 274/349 (78%), Gaps = 4/349 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG Q      I  V SGSL LD ALG+GG+P+GR
Sbjct: 1   MSDRQAALDMALKQIEKQFGKGSIMKLGEQTETR--ISTVPSGSLALDAALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT+ALH IA+ Q+ GG  AF+DAEHALD +YA+KLGV++  LL+SQPD
Sbjct: 59  IIEVYGPESSGKTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDI+VIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K  + + GN
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK+A PF+  E DIMYGEGIS  GE+IDLG +  IV KSGAW+S++ +RLGQ
Sbjct: 239 KTKIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGAWYSYQEERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           GREN+K FL+EN +I   I+  +R++ GL  D+    PA   +  A ++
Sbjct: 299 GRENAKQFLKENKDILLMIQEQIREHYGL--DTGGAAPAQEDEAQAQEE 345


>gi|254456368|ref|ZP_05069797.1| protein RecA [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083370|gb|EDZ60796.1| protein RecA [Candidatus Pelagibacter sp. HTCC7211]
          Length = 382

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 229/360 (63%), Positives = 295/360 (81%), Gaps = 2/360 (0%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
            +EM+I +K+KAL+AA++QI   +GKG++M+LG + ++   IE VS+GSL LD+ALGIGG
Sbjct: 14  DQEMDIKEKNKALDAAIAQITDNFGKGSVMKLGQKRAM--DIESVSTGSLSLDLALGIGG 71

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            PKGRIVE+YGPESSGKTTLAL  +A++QK GG CAFVDAEHALD +YA+KLGV+ + LL
Sbjct: 72  LPKGRIVEVYGPESSGKTTLALQVVAEAQKAGGICAFVDAEHALDPVYAKKLGVNTEELL 131

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           ISQPD GEQALEI D LV+SG++ +IVIDSVAALTP+AEIEG+MG+   G+Q+RLMSQAL
Sbjct: 132 ISQPDAGEQALEIADTLVKSGSISVIVIDSVAALTPKAEIEGEMGDHHVGLQSRLMSQAL 191

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLTSSIS +  +++FINQ+RMKIGVMFGSPETT+GGNALKFYSSVR+DIRR+G+IKDKD
Sbjct: 192 RKLTSSISNTNTMMIFINQIRMKIGVMFGSPETTSGGNALKFYSSVRMDIRRIGAIKDKD 251

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            I GN TRVKVVKNK+A PFK VEFD+MYG+GIS  GEL+DLG KA I++KSGAW+++KG
Sbjct: 252 EIIGNSTRVKVVKNKVAPPFKVVEFDLMYGKGISKMGELVDLGSKADIIEKSGAWYAYKG 311

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           +++GQGREN+K +L +N ++A  IE  +R+ AG++   +   P    K   D+ +    E
Sbjct: 312 EKIGQGRENAKTYLAQNPKVAAEIELAIREKAGVIQKKIEGNPLDPEKAAKDQIEDPKAE 371


>gi|157326973|gb|ABV44599.1| RecA [Burkholderia multivorans]
 gi|157326985|gb|ABV44605.1| RecA [Burkholderia multivorans]
          Length = 319

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 224/320 (70%), Positives = 279/320 (87%), Gaps = 1/320 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
            AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPE
Sbjct: 1   AAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEI
Sbjct: 60  SSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+
Sbjct: 120 TDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCL 179

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVK
Sbjct: 180 VIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVK 239

Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316
           NK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ F
Sbjct: 240 NKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREF 299

Query: 317 LRENIEIAENIESLLRQNAG 336
           LREN EIA  IE+ +R++ G
Sbjct: 300 LRENPEIAREIENRIRESLG 319


>gi|119504841|ref|ZP_01626919.1| recA protein [marine gamma proteobacterium HTCC2080]
 gi|119459446|gb|EAW40543.1| recA protein [marine gamma proteobacterium HTCC2080]
          Length = 347

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 217/347 (62%), Positives = 281/347 (80%), Gaps = 3/347 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K+KAL+AA+SQI+R +GKG +M++G Q  +   I  +S+GSLGLDIALGIGG PKGRI
Sbjct: 3   PNKAKALDAAMSQIERQFGKGTVMRMGDQERV--AIPSISTGSLGLDIALGIGGLPKGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
            EIYGPESSGKTT+ L  IA++QK GGT AF+DAEHALD  YA +LGV + ++++SQPDT
Sbjct: 61  CEIYGPESSGKTTMTLQVIAEAQKKGGTAAFIDAEHALDPQYAERLGVQVDDMIVSQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALE+ +MLVRSGAVD++VIDSVAALTP+AEIEG+MG+S  G+QARL+SQA+RKLT +
Sbjct: 121 GEQALEVAEMLVRSGAVDVLVIDSVAALTPKAEIEGEMGQSHVGLQARLLSQAMRKLTGA 180

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++KD D + GN+
Sbjct: 181 IKQTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGNE 240

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EF IMYGEGI   GE+ID GVK ++VDKSGAW+++KG ++GQG
Sbjct: 241 TRVKVVKNKVSPPFKQAEFQIMYGEGIYHMGEVIDWGVKLNLVDKSGAWYAYKGDKIGQG 300

Query: 310 RENSKIFLRENIEIAENIESLLRQN-AGLVADSLLQEPAINTKDDAD 355
           + N+  FL E+ +IA  IES +R    G+    +   P  + +  A+
Sbjct: 301 KANASRFLEEHPDIANEIESQIRHQTMGMPLAVVEAAPIESGEASAE 347


>gi|294634757|ref|ZP_06713286.1| protein RecA [Edwardsiella tarda ATCC 23685]
 gi|291091816|gb|EFE24377.1| protein RecA [Edwardsiella tarda ATCC 23685]
          Length = 353

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 223/351 (63%), Positives = 278/351 (79%), Gaps = 2/351 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LD+ALGIGG P GRIV
Sbjct: 4   NKQRALAAALGQIEKQFGKGSIMRLGDTQTL--DIESISTGSLSLDVALGIGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA++Q  G TCAF+DAEHALD IYA KLGV + +LL+SQPDTG
Sbjct: 62  EIFGPESSGKTTLTLSVIARAQAAGKTCAFIDAEHALDPIYAAKLGVKVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVD+I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 122 EQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C++VFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK+ D + GN+T
Sbjct: 182 KNANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG GIS   ELIDLGVK  ++DKSGAW+S+ G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGAGISKESELIDLGVKHKLLDKSGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
            NS  FL+EN  I+  +E  LR+     A +   + A    DD    D +N
Sbjct: 302 ANSMKFLQENPAISAELEGKLRELLLSHAAATDADRAKGEVDDDAMPDDEN 352


>gi|317049271|ref|YP_004116919.1| recA protein [Pantoea sp. At-9b]
 gi|316950888|gb|ADU70363.1| recA protein [Pantoea sp. At-9b]
          Length = 356

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 216/351 (61%), Positives = 278/351 (79%), Gaps = 2/351 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+ FGEL+DLGVK  +V+K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQIMYGEGINTFGELVDLGVKHKLVEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
            N+  FL+EN  IA  I+  LR      A +      ++ +D  +  +T+ 
Sbjct: 304 ANATNFLKENPAIANEIDQKLRDMLLTGATATAGAADVSAEDYEEASETNE 354


>gi|28948687|pdb|1N03|A Chain A, Model For Active Reca Filament
 gi|28948688|pdb|1N03|B Chain B, Model For Active Reca Filament
 gi|28948689|pdb|1N03|C Chain C, Model For Active Reca Filament
 gi|28948690|pdb|1N03|D Chain D, Model For Active Reca Filament
 gi|28948691|pdb|1N03|E Chain E, Model For Active Reca Filament
 gi|28948692|pdb|1N03|F Chain F, Model For Active Reca Filament
 gi|28948693|pdb|1N03|G Chain G, Model For Active Reca Filament
 gi|157833666|pdb|1REA|A Chain A, Structure Of The Reca Protein-Adp Complex
 gi|157836330|pdb|2REB|A Chain A, The Structure Of The E. Coli Reca Protein Monomer And
           Polymer
 gi|227588|prf||1707271A recA gene
 gi|227589|prf||1707271B recA gene
          Length = 352

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 213/348 (61%), Positives = 283/348 (81%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 5   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 123 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 183 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 243 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            N+  +L++N E A+ IE  +R+      +S       +++  A+ ++
Sbjct: 303 ANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVAETNE 350


>gi|10121178|gb|AAG13101.1|AF143786_1 RecA [Burkholderia cepacia ATCC 25416]
          Length = 347

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 233/350 (66%), Positives = 296/350 (84%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 2   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 121 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 241 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ G+VA   + + A N  +  D+++
Sbjct: 301 GKDNAREFLRENPEIAREIENRIRESLGVVA---MPDGAGNEPEAMDEEE 347


>gi|254575576|gb|ACT68302.1| RecA [Burkholderia cepacia]
          Length = 346

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 234/350 (66%), Positives = 296/350 (84%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 120 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 180 AIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 240 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ G+VA   + + A N  +  D+++
Sbjct: 300 GKDNAREFLRENPEIAREIENRIRESLGVVA---MPDGAGNEAEAMDEEE 346


>gi|283456289|ref|YP_003360853.1| RecA protein [Bifidobacterium dentium Bd1]
 gi|306822508|ref|ZP_07455886.1| recombination protein A [Bifidobacterium dentium ATCC 27679]
 gi|309801448|ref|ZP_07695575.1| RecA protein [Bifidobacterium dentium JCVIHMP022]
 gi|283102923|gb|ADB10029.1| RecA protein [Bifidobacterium dentium Bd1]
 gi|304554053|gb|EFM41962.1| recombination protein A [Bifidobacterium dentium ATCC 27679]
 gi|308221963|gb|EFO78248.1| RecA protein [Bifidobacterium dentium JCVIHMP022]
          Length = 386

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 208/352 (59%), Positives = 275/352 (78%), Gaps = 8/352 (2%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  ALE AL+Q+++ +GKG+ M+LG +    + +EV+ +GSL LD+ALGIGG PKGRIVE
Sbjct: 24  RQAALETALAQVEKNFGKGSAMRLGDRPE--QDVEVIPTGSLALDMALGIGGLPKGRIVE 81

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH +A +QK GG  AF+DAEHALD +YARKLGVD  +L++SQPD GE
Sbjct: 82  IYGPESSGKTTLALHVVANAQKKGGVAAFIDAEHALDPVYARKLGVDTDSLIVSQPDNGE 141

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T +++
Sbjct: 142 QALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALA 201

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGV FG+PETTTGG ALKFY+SVR+DIRR+ +IK+ D   GN+TR
Sbjct: 202 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRMDIRRIQTIKNGDEAVGNRTR 261

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNKMA PFK  EFD++YGEGIS  G ++D+ ++ ++V KSG+WF++ G +LGQGRE
Sbjct: 262 VKVVKNKMAPPFKSAEFDVLYGEGISKEGSVLDMALQVNVVKKSGSWFTYDGDQLGQGRE 321

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           N + FL++N  + E IE+ ++   GL+      EP     +D D ++T   E
Sbjct: 322 NVRQFLKDNPGVTEEIENRVKAAFGLI------EPTDQFAEDGDGNETAASE 367


>gi|109453502|gb|ABG34231.1| RecA [Salmonella enterica]
 gi|109453504|gb|ABG34232.1| RecA [Salmonella enterica]
 gi|109453506|gb|ABG34233.1| RecA [Salmonella enterica]
 gi|109453508|gb|ABG34234.1| RecA [Salmonella enterica]
 gi|109453510|gb|ABG34235.1| RecA [Salmonella enterica]
 gi|109453512|gb|ABG34236.1| RecA [Salmonella enterica]
          Length = 353

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 214/348 (61%), Positives = 281/348 (80%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            N+  +L+EN   A+ IE  +R+      DS       +++  A+ ++
Sbjct: 304 ANATTWLKENPATAKEIEKKVRELLLSNQDSTPDFSVDDSEGVAETNE 351


>gi|254575572|gb|ACT68300.1| RecA [Burkholderia cepacia]
          Length = 346

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 231/331 (69%), Positives = 288/331 (87%), Gaps = 1/331 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 120 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 180 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 240 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           G++N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 GKDNAREFLRENPEIAREIENRIRESLGVVA 330


>gi|311744185|ref|ZP_07717990.1| recombination protein A [Aeromicrobium marinum DSM 15272]
 gi|311312540|gb|EFQ82452.1| recombination protein A [Aeromicrobium marinum DSM 15272]
          Length = 361

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 208/346 (60%), Positives = 273/346 (78%), Gaps = 2/346 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +  +++KA++ A++QI R +GKGA+M+LG +G     I+V+ +G+  LD+ALGIGG P+G
Sbjct: 17  DTDERTKAIDNAIAQIDRAHGKGAVMRLGERGRT--KIDVIPTGATALDVALGIGGLPRG 74

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R+VEIYGPESSGKTT+ALH +A +QK+GG  AF+DAEHALD  YAR LGVD   LLISQP
Sbjct: 75  RVVEIYGPESSGKTTVALHAVANAQKSGGVAAFIDAEHALDPEYARALGVDTDALLISQP 134

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D+GEQALEI DML+RSGA+DIIVIDSVAAL PRAEI+G+MG+S  G+QARLMSQALRK+T
Sbjct: 135 DSGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKMT 194

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            +I+ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD   + G
Sbjct: 195 GAINGSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDMVG 254

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+TRVKVVKNK+A PFKQ EFDIMYG+GIS  G LID+GV   +V K+GAW++++G +LG
Sbjct: 255 NRTRVKVVKNKLAPPFKQAEFDIMYGKGISREGSLIDVGVDCGLVRKAGAWYTYEGDQLG 314

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           QG+EN++ FL +N ++AE +E  ++   G+         A+  + D
Sbjct: 315 QGKENARQFLHDNPDLAEELEKRIKDQMGVGVAVEETAEAVGAEAD 360


>gi|218780785|ref|YP_002432103.1| recA protein [Desulfatibacillum alkenivorans AK-01]
 gi|218762169|gb|ACL04635.1| recA protein [Desulfatibacillum alkenivorans AK-01]
          Length = 353

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 218/332 (65%), Positives = 274/332 (82%), Gaps = 2/332 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             DK+KAL+ A+SQI+R +GKG++M+LG Q ++   + V+ +GS+ LD+ALGIGG P+GR
Sbjct: 4   TEDKTKALDTAISQIERQFGKGSVMKLGDQVAM--KVPVIPTGSIALDLALGIGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEIYGPESSGKTTLALH +A++Q  GG  AFVDAEHALD  YA+KLGV+   LL+SQPD
Sbjct: 62  IVEIYGPESSGKTTLALHAVAEAQARGGVAAFVDAEHALDVSYAKKLGVNCDELLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DMLVRSGAVDI+VIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT 
Sbjct: 122 TGEQALEIADMLVRSGAVDILVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++++  L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+     GN
Sbjct: 182 TINKTRTCLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGTESVGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + +V+VVKNKMA PFK+ EFD+MYGEGIS  G+L+D GV   I+DKSGAW+SF G+R+GQ
Sbjct: 242 RAKVRVVKNKMAPPFKEAEFDVMYGEGISKTGDLLDAGVNLEIIDKSGAWYSFDGERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           GREN K F +EN ++ +    ++R   G+  D
Sbjct: 302 GRENVKRFFKENPDVYDKALKMIRNKLGIGDD 333


>gi|10121184|gb|AAG13104.1|AF143789_1 RecA [Burkholderia cepacia]
 gi|10121186|gb|AAG13105.1|AF143790_1 RecA [Burkholderia cepacia]
          Length = 347

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 232/350 (66%), Positives = 296/350 (84%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 2   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 121 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 241 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ G+VA   + +  +N  +  D+++
Sbjct: 301 GKDNAREFLRENPEIAREIENRIRESLGVVA---MPDGVVNEAEAMDEEE 347


>gi|242133664|gb|ACS87943.1| RecA [Burkholderia cepacia]
 gi|242133668|gb|ACS87945.1| RecA [Burkholderia cepacia]
          Length = 346

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 234/350 (66%), Positives = 296/350 (84%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 120 TGEQALEITDALVRSGSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 180 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 240 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ G+VA   + + A N  +  D+++
Sbjct: 300 GKDNAREFLRENPEIAREIENRIRESLGVVA---MPDGASNEAEAMDEEE 346


>gi|268593119|ref|ZP_06127340.1| protein RecA [Providencia rettgeri DSM 1131]
 gi|291311389|gb|EFE51842.1| protein RecA [Providencia rettgeri DSM 1131]
          Length = 355

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 216/352 (61%), Positives = 282/352 (80%), Gaps = 3/352 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDVALGAGGLPLGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q++G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQRSGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ + I G++T
Sbjct: 184 KTSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKNGEEIIGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+ FGELIDLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINTFGELIDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
            NS  +L+E+ E+A+ I++ LR+   L         A +   DAD+++T   
Sbjct: 304 ANSTNYLKEHPEVAQEIDTKLREML-LNHTGEFSSAATDFISDADEEETPEE 354


>gi|225570671|ref|ZP_03779694.1| hypothetical protein CLOHYLEM_06771 [Clostridium hylemonae DSM
           15053]
 gi|225160498|gb|EEG73117.1| hypothetical protein CLOHYLEM_06771 [Clostridium hylemonae DSM
           15053]
          Length = 358

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 196/331 (59%), Positives = 269/331 (81%), Gaps = 1/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   DK KAL+AA+S++++ +GKG +M+LG   +  + +E V +GSL LD+ALG+GG PK
Sbjct: 1   MVSDDKKKALDAAISKLEKDFGKGTVMKLGDPAAQVQ-VETVPTGSLSLDLALGLGGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTT+ALH IA+ QK GG   F+DAEHALD +YA  +GVD+  L ISQ
Sbjct: 60  GRVVEIYGPESSGKTTVALHMIAEVQKRGGIAGFIDAEHALDPVYAGNIGVDIDELYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+G+QALEIT+ +VRSGA+DI+V+DSVAAL PR EIEGDMG+S  G+QARLMSQALRKL
Sbjct: 120 PDSGDQALEITETMVRSGAMDIVVVDSVAALVPRQEIEGDMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T  IS+S C+++FINQ+R K+G+MFG+PETTTGG ALKFY+S+R+D+RR+ ++K    + 
Sbjct: 180 TPVISKSNCVVIFINQLREKVGIMFGNPETTTGGRALKFYASIRMDVRRIETLKQGGEMV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVK+VKNK+A PFK+ EFDIM+G+GIS  G+++DL    ++++KSGAW+++ G ++
Sbjct: 240 GNRTRVKIVKNKIAPPFKEAEFDIMFGKGISREGDILDLAASINVINKSGAWYAYNGDKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQGREN+KI+L E+ +I E +E+ +R +  L
Sbjct: 300 GQGRENAKIYLAEHPDILEAVETKIRAHYHL 330


>gi|262370234|ref|ZP_06063560.1| recombinase A [Acinetobacter johnsonii SH046]
 gi|262314576|gb|EEY95617.1| recombinase A [Acinetobacter johnsonii SH046]
          Length = 347

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 221/345 (64%), Positives = 275/345 (79%), Gaps = 2/345 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AALSQI++ +GK  +M+LG      + +E VS+GSL LDIALGIGG PKGRIV
Sbjct: 4   NKSKALNAALSQIEKQFGKNTVMRLGDNT--VQAVEAVSTGSLTLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ L  IA+ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD G
Sbjct: 62  EIYGPESSGKTTMTLQAIAECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IV+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T + 
Sbjct: 122 EQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNA 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRRVG +K+ D I G++T
Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGQVKEGDEIVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNKMA PF++  F I+YG+G++  GEL+DL V+  IV K+GAW+S++G ++GQG+
Sbjct: 242 KVKVVKNKMAPPFREALFQILYGKGVNHLGELVDLAVQQEIVQKAGAWYSYQGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            N    L EN ++AE IE ++R+     A++   E      D  D
Sbjct: 302 NNVIRHLEENPQLAETIEKIIREKLLTTANAAPVEENEEEPDFLD 346


>gi|116119172|gb|ABJ74756.1| RecA [Burkholderia sp. R425]
          Length = 347

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 230/331 (69%), Positives = 287/331 (86%), Gaps = 1/331 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 2   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQ LEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 121 TGEQTLEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 241 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           G++N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 301 GKDNAREFLRENPEIAREIENRIRESLGVVA 331


>gi|242133674|gb|ACS87948.1| RecA [Burkholderia cepacia]
          Length = 346

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 232/350 (66%), Positives = 295/350 (84%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 120 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 180 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 240 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ G+V+   + +   N  +  D+++
Sbjct: 300 GKDNAREFLRENPEIAREIENRIRESLGVVS---MPDGVANEAEAMDEEE 346


>gi|259909420|ref|YP_002649776.1| Recombinase A [Erwinia pyrifoliae Ep1/96]
 gi|224965042|emb|CAX56573.1| Recombinase A [Erwinia pyrifoliae Ep1/96]
 gi|283479497|emb|CAY75413.1| Recombinase A [Erwinia pyrifoliae DSM 12163]
          Length = 355

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 213/352 (60%), Positives = 276/352 (78%), Gaps = 2/352 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++T
Sbjct: 184 KNSGTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQIMYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
            N+  FL+EN  IA  I++ LR       D          + DA+ +  +++
Sbjct: 304 ANAGNFLKENPAIANEIDAKLRAMLLGNQDDKPDFVPAAHEVDAESEANESL 355


>gi|108804260|ref|YP_644197.1| recA protein [Rubrobacter xylanophilus DSM 9941]
 gi|123177369|sp|Q1AW43|RECA_RUBXD RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|108765503|gb|ABG04385.1| RecA protein [Rubrobacter xylanophilus DSM 9941]
          Length = 344

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 207/322 (64%), Positives = 265/322 (82%), Gaps = 2/322 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL+ A+SQI+R +GKG+IM++G + S  + +  +S+GSL LD+ALG+GG P+GRI
Sbjct: 3   LDKSKALDTAVSQIERQFGKGSIMRMGDRAS--QKVASISTGSLALDLALGVGGVPRGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEI+GPESSGKTTLALH IA++Q+ GG  AF+DAEHALD  YA  +GVDL+NL  SQPD+
Sbjct: 61  VEIFGPESSGKTTLALHIIAEAQRAGGLAAFIDAEHALDPTYAEAIGVDLENLYFSQPDS 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D +VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL+ S
Sbjct: 121 GEQALEIADTLVRSGALDAVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGS 180

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +SRS    +FINQ+R KIGVMFGSPETT GG ALKFY+SVR+DIRR+G++K  +   GNQ
Sbjct: 181 LSRSGTTAIFINQLREKIGVMFGSPETTPGGRALKFYASVRMDIRRIGALKAGNETVGNQ 240

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVK+VKNK+A PFK+V FDIMYGEGIS  G L+D+G++  ++ KSGAWF++  +R+GQG
Sbjct: 241 TRVKIVKNKVAPPFKEVTFDIMYGEGISREGSLLDVGIEQGVIQKSGAWFAYGEERIGQG 300

Query: 310 RENSKIFLRENIEIAENIESLL 331
           REN++ FL+E+ EI + I   +
Sbjct: 301 RENARKFLKEHPEIRDRITREV 322


>gi|171057188|ref|YP_001789537.1| recombinase A [Leptothrix cholodnii SP-6]
 gi|170774633|gb|ACB32772.1| recA protein [Leptothrix cholodnii SP-6]
          Length = 353

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 222/327 (67%), Positives = 286/327 (87%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K+KAL+ AL+QI++ +GKG+IM+LG  G + E I+VVS+GSLGLD+ALG+GG P+GR+V
Sbjct: 12  EKAKALQVALAQIEKQFGKGSIMRLGE-GEVIEDIQVVSTGSLGLDVALGVGGLPRGRVV 70

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK  G CAF+DAEHALD  YA+KLGV+L++LLISQPDTG
Sbjct: 71  EIYGPESSGKTTLTLQVIAQMQKLSGVCAFIDAEHALDIQYAQKLGVNLQDLLISQPDTG 130

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG+VD+IV+DSVAALTP+AE+EG+MG+SLPG+QARLMSQALRKLTS+I
Sbjct: 131 EQALEIVDALVRSGSVDLIVVDSVAALTPKAELEGEMGDSLPGLQARLMSQALRKLTSNI 190

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  + + G++T
Sbjct: 191 KKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGEEVIGSET 250

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK++ PFK  EFDI+YGEGIS  GE+ID+GV A +VDKSGAW+++ G+++GQG+
Sbjct: 251 KVKVVKNKVSPPFKTAEFDILYGEGISREGEIIDMGVVAKVVDKSGAWYAYNGEKIGQGK 310

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           +N + FLREN  +A  IE+ +R++ G+
Sbjct: 311 DNCREFLRENPALAHEIENKIRESLGI 337


>gi|254575564|gb|ACT68296.1| RecA [Burkholderia cepacia]
 gi|254575578|gb|ACT68303.1| RecA [Burkholderia cepacia]
          Length = 346

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 234/350 (66%), Positives = 296/350 (84%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 120 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 180 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 240 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ G+VA   + + A N  +  D+++
Sbjct: 300 GKDNAREFLRENPEIAREIENRIRESLGVVA---MPDGAGNEAEAMDEEE 346


>gi|116119150|gb|ABJ74745.1| RecA [Burkholderia sp. M229]
          Length = 347

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 232/350 (66%), Positives = 295/350 (84%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 2   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 121 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALK YSSVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKLYSSVRLDIRRIGSIKKNDEVIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 241 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ G+VA   + +  +N  +  D+++
Sbjct: 301 GKDNAREFLRENPEIAREIENRIRESLGVVA---MPDGVVNEAEAMDEEE 347


>gi|270157136|ref|ZP_06185793.1| recombinase A [Legionella longbeachae D-4968]
 gi|289164459|ref|YP_003454597.1| RecA protein [Legionella longbeachae NSW150]
 gi|269989161|gb|EEZ95415.1| recombinase A [Legionella longbeachae D-4968]
 gi|288857632|emb|CBJ11472.1| RecA protein [Legionella longbeachae NSW150]
          Length = 347

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 223/348 (64%), Positives = 284/348 (81%), Gaps = 4/348 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AALSQI+R +GKG++M++G   S+   IE +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKQKALSAALSQIERQFGKGSVMRMGD-SSVARDIEAISTGSLGLDIALGIGGLPKGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA+KLGV++  LL+SQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAECQKIGGTAAFIDAEHALDPSYAQKLGVNVDELLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSGAVD+I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 123 EQALEITDMLVRSGAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  + I G++T
Sbjct: 183 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGEEILGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK  EFDI+Y EGIS   E+I+L V+ ++++KSGAW+S+KG+++GQG+
Sbjct: 243 RVKVVKNKVAPPFKVTEFDILYNEGISRESEIINLAVQLNLIEKSGAWYSYKGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           +N +++L+E+ ++A  +E  +R       +  L  PA    +    DD
Sbjct: 303 DNVRLYLKEHSQVAATLEQQIRTEL---LEKKLPVPAAAEDEFETIDD 347


>gi|237908827|gb|ACR33789.1| RecA [Burkholderia hospita]
          Length = 319

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 222/320 (69%), Positives = 279/320 (87%), Gaps = 1/320 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
            AAL+QI++ +GKG++M+LG QG   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPE
Sbjct: 1   AAALAQIEKQFGKGSVMRLG-QGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  +A+ QK GGT AF+DAEHALD  YA+KLGVD+ +LL+SQPDTGEQ LEI
Sbjct: 60  SSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAQKLGVDVSDLLVSQPDTGEQTLEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+
Sbjct: 120 ADALVRSGSIDMIVIDSVAALAPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCL 179

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVK
Sbjct: 180 VIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVK 239

Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316
           NK+A PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQG++N++ F
Sbjct: 240 NKVAPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYSGERIGQGKDNAREF 299

Query: 317 LRENIEIAENIESLLRQNAG 336
           LREN +IA  IE+ +R++ G
Sbjct: 300 LRENPDIAREIENRIRESLG 319


>gi|146312815|ref|YP_001177889.1| recombinase A [Enterobacter sp. 638]
 gi|166918711|sp|A4WDQ8|RECA_ENT38 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|145319691|gb|ABP61838.1| RecA protein [Enterobacter sp. 638]
          Length = 352

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 217/350 (62%), Positives = 285/350 (81%), Gaps = 6/350 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GR+V
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGDNVIGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+FFGEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFFGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
            N+  +L+EN   A+ IE  +R+   L+ ++   +P     D AD ++T+
Sbjct: 304 ANAISWLKENPAAAKEIEKKVRE---LLLNNEDSKPDF-VVDAADAEETN 349


>gi|269960384|ref|ZP_06174757.1| recA protein [Vibrio harveyi 1DA3]
 gi|269834811|gb|EEZ88897.1| recA protein [Vibrio harveyi 1DA3]
          Length = 347

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 211/347 (60%), Positives = 281/347 (80%), Gaps = 4/347 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+K+GAW+S++G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYQGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
            N+  +LREN EI + I++ LR+   L++ +L + P    K + +++
Sbjct: 302 ANACNYLRENPEIGKTIDTKLREM--LLSPALPEAPESGEKSEQEEE 346


>gi|153835574|ref|ZP_01988241.1| protein RecA [Vibrio harveyi HY01]
 gi|148867839|gb|EDL67070.1| protein RecA [Vibrio harveyi HY01]
          Length = 347

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 211/347 (60%), Positives = 281/347 (80%), Gaps = 4/347 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+K+GAW+S++G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYQGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
            N+  +LREN EI + I++ LR+   L++ +L + P    K + +++
Sbjct: 302 ANACNYLRENPEIGKTIDAKLREM--LLSPALPEAPESGEKSEQEEE 346


>gi|261346226|ref|ZP_05973870.1| protein RecA [Providencia rustigianii DSM 4541]
 gi|282565534|gb|EFB71069.1| protein RecA [Providencia rustigianii DSM 4541]
          Length = 355

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 212/352 (60%), Positives = 281/352 (79%), Gaps = 3/352 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LD+ALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRTM--DVETISTGSLSLDVALGAGGLPLGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q++G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIASAQRSGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ + I G++T
Sbjct: 184 KNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKNGEEIVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+ FGELIDLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINTFGELIDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
            NS  +L+E+ ++A+ I++ LR+   L     L     +   D+D ++T   
Sbjct: 304 ANSTTYLKEHPDVAKEIDTKLREML-LSHTGELSNTTTDFVSDSDVEETPEE 354


>gi|170766128|ref|ZP_02900939.1| protein RecA [Escherichia albertii TW07627]
 gi|170125274|gb|EDS94205.1| protein RecA [Escherichia albertii TW07627]
          Length = 353

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 213/348 (61%), Positives = 283/348 (81%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            N+  +L++N E A+ IE  +R+      +S       +++  A+ ++
Sbjct: 304 ANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVAEANE 351


>gi|268317727|ref|YP_003291446.1| recA protein [Rhodothermus marinus DSM 4252]
 gi|262335261|gb|ACY49058.1| recA protein [Rhodothermus marinus DSM 4252]
          Length = 347

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 206/334 (61%), Positives = 271/334 (81%), Gaps = 2/334 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K+KALE A+  I++ YGKGAIM+LG   +I   ++V+ +GSL LD ALG+GG P+GRIVE
Sbjct: 8   KAKALELAVKHIEKQYGKGAIMRLGDAPAI--SVDVIPTGSLALDAALGVGGVPRGRIVE 65

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH +A++QK GG CAF+DAEHA D+ YA  LGVDL NLL++QPDTGE
Sbjct: 66  IYGPESSGKTTLALHIMAEAQKLGGACAFIDAEHAFDARYAANLGVDLDNLLVAQPDTGE 125

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL I D LVRSGA+D+IV+DSVAAL P+AEI+GDMG+S  G+QARLMSQALRKLT +I+
Sbjct: 126 QALNICDTLVRSGALDVIVVDSVAALVPQAEIQGDMGDSHVGLQARLMSQALRKLTGTIN 185

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           R++ +L+FINQ+R KIGVM+G+PETTTGG ALKFY+SVR+DIRR+G+IK+   + GN+T+
Sbjct: 186 RTRTVLIFINQLRQKIGVMYGNPETTTGGLALKFYASVRMDIRRIGAIKEGSEVVGNRTK 245

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNK+A PF++ EFDI+YGEGIS  GEL+DL V+ +I+ KSG+W+++  +R+GQGRE
Sbjct: 246 VKIVKNKVAPPFREAEFDIIYGEGISVLGELVDLAVEYNIIQKSGSWYAYGEERIGQGRE 305

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
            +K +LRE  E+ E I   +++  G+       E
Sbjct: 306 AAKAWLRERPELQEEIRRQVKEAMGVQPPRSRAE 339


>gi|55670286|pdb|1U94|A Chain A, Crystal Structure Of E. Coli Reca In A Compressed Helical
           Filament Form 2
 gi|55670292|pdb|1U98|A Chain A, "crystal Structure Of E. Coli Reca In A Compressed Helical
           Filament Form3"
 gi|55670293|pdb|1U99|A Chain A, "crystal Structures Of E. Coli Reca In A Compressed
           Helical Filament Form 4"
 gi|58177451|pdb|1XMS|A Chain A, "e. Coli Reca In Complex With Mnamp-Pnp"
 gi|58177454|pdb|1XMV|A Chain A, "e. Coli Reca In Complex With Mgadp"
          Length = 356

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 213/348 (61%), Positives = 283/348 (81%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 9   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 66

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 67  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 126

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 127 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 186

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 187 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 246

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 247 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 306

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            N+  +L++N E A+ IE  +R+      +S       +++  A+ ++
Sbjct: 307 ANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVAETNE 354


>gi|313201868|ref|YP_004040526.1| recombination protein RecA [Methylovorus sp. MP688]
 gi|312441184|gb|ADQ85290.1| recA protein [Methylovorus sp. MP688]
          Length = 344

 Score =  374 bits (961), Expect = e-102,   Method: Composition-based stats.
 Identities = 223/342 (65%), Positives = 288/342 (84%), Gaps = 1/342 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AALSQI++ +GKG+IM++G    +   I+ VS+GSLGLDIALGIGG P+GRI+
Sbjct: 4   NKSKALAAALSQIEKQFGKGSIMRMGD-TDVAADIQAVSTGSLGLDIALGIGGLPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK GGT AF+DAEHALD  YA+KLGV++ +LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLSVIAQMQKMGGTAAFIDAEHALDPQYAQKLGVNVSDLLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VDI+V+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 123 EQALEIADMLVRSGSVDIVVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK  D + G++T
Sbjct: 183 KRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKKGDEVIGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDI+YGEGIS  GE+I++GV   +V+KSGAW+S+KG+++GQG+
Sbjct: 243 RVKVVKNKVAPPFKQAEFDILYGEGISREGEIIEMGVNLKLVEKSGAWYSYKGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           +N++ +LRE+ +IA  I++ +R N+ L   ++   P  + ++
Sbjct: 303 DNAREYLREHADIANEIDAKIRANSNLAGAAMTVAPDDDGEE 344


>gi|238758255|ref|ZP_04619434.1| hypothetical protein yaldo0001_26680 [Yersinia aldovae ATCC 35236]
 gi|238703585|gb|EEP96123.1| hypothetical protein yaldo0001_26680 [Yersinia aldovae ATCC 35236]
          Length = 355

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 214/353 (60%), Positives = 279/353 (79%), Gaps = 4/353 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGDVVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N+  +L+EN  IA  ++  LR+   L+     ++P +     AD+ D  + E
Sbjct: 304 ANASNYLKENPAIAAELDKKLREM--LLNGGNGEQPVVAVAALADETDETSEE 354


>gi|260599086|ref|YP_003211657.1| recombinase A [Cronobacter turicensis z3032]
 gi|260218263|emb|CBA33202.1| Protein recA [Cronobacter turicensis z3032]
          Length = 354

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 213/353 (60%), Positives = 281/353 (79%), Gaps = 5/353 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQRAGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD++V+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVLVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ + + G++T
Sbjct: 184 KNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGEEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINFYGELVDLGVKHKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N+  FL+EN  +A+ IE  LR+   ++ ++    P     D+    +  N E
Sbjct: 304 ANATNFLKENKPMADEIEKKLRE---MLLNNQDATPDFTVDDNDGGVEETNEE 353


>gi|15832810|ref|NP_311583.1| recombinase A [Escherichia coli O157:H7 str. Sakai]
 gi|16130606|ref|NP_417179.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia coli str. K-12 substr.
           MG1655]
 gi|26249094|ref|NP_755134.1| recombinase A [Escherichia coli CFT073]
 gi|30064059|ref|NP_838230.1| recombinase A [Shigella flexneri 2a str. 2457T]
 gi|56480164|ref|NP_708507.2| recombinase A [Shigella flexneri 2a str. 301]
 gi|74313264|ref|YP_311683.1| recombinase A [Shigella sonnei Ss046]
 gi|82545225|ref|YP_409172.1| recombinase A [Shigella boydii Sb227]
 gi|82778068|ref|YP_404417.1| recombinase A [Shigella dysenteriae Sd197]
 gi|89109486|ref|AP_003266.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia coli str. K-12 substr.
           W3110]
 gi|91212058|ref|YP_542044.1| recombinase A [Escherichia coli UTI89]
 gi|110642819|ref|YP_670549.1| recombinase A [Escherichia coli 536]
 gi|110806675|ref|YP_690195.1| recombinase A [Shigella flexneri 5 str. 8401]
 gi|157156823|ref|YP_001464007.1| recombinase A [Escherichia coli E24377A]
 gi|157162145|ref|YP_001459463.1| recombinase A [Escherichia coli HS]
 gi|168749979|ref|ZP_02775001.1| protein RecA [Escherichia coli O157:H7 str. EC4113]
 gi|168755441|ref|ZP_02780448.1| protein RecA [Escherichia coli O157:H7 str. EC4401]
 gi|168762905|ref|ZP_02787912.1| protein RecA [Escherichia coli O157:H7 str. EC4501]
 gi|168768787|ref|ZP_02793794.1| protein RecA [Escherichia coli O157:H7 str. EC4486]
 gi|168774772|ref|ZP_02799779.1| protein RecA [Escherichia coli O157:H7 str. EC4196]
 gi|168778678|ref|ZP_02803685.1| protein RecA [Escherichia coli O157:H7 str. EC4076]
 gi|168787951|ref|ZP_02812958.1| protein RecA [Escherichia coli O157:H7 str. EC869]
 gi|168800223|ref|ZP_02825230.1| protein RecA [Escherichia coli O157:H7 str. EC508]
 gi|170019055|ref|YP_001724009.1| recombinase A [Escherichia coli ATCC 8739]
 gi|170683219|ref|YP_001744846.1| recombinase A [Escherichia coli SMS-3-5]
 gi|187730972|ref|YP_001881552.1| recombinase A [Shigella boydii CDC 3083-94]
 gi|188495073|ref|ZP_03002343.1| protein RecA [Escherichia coli 53638]
 gi|191167104|ref|ZP_03028925.1| protein RecA [Escherichia coli B7A]
 gi|191171319|ref|ZP_03032868.1| protein RecA [Escherichia coli F11]
 gi|193065012|ref|ZP_03046087.1| protein RecA [Escherichia coli E22]
 gi|193069688|ref|ZP_03050640.1| protein RecA [Escherichia coli E110019]
 gi|194427861|ref|ZP_03060407.1| protein RecA [Escherichia coli B171]
 gi|194432994|ref|ZP_03065277.1| protein RecA [Shigella dysenteriae 1012]
 gi|194439005|ref|ZP_03071089.1| protein RecA [Escherichia coli 101-1]
 gi|195938448|ref|ZP_03083830.1| recombinase A [Escherichia coli O157:H7 str. EC4024]
 gi|208807916|ref|ZP_03250253.1| protein RecA [Escherichia coli O157:H7 str. EC4206]
 gi|208811896|ref|ZP_03253225.1| protein RecA [Escherichia coli O157:H7 str. EC4045]
 gi|208820218|ref|ZP_03260538.1| protein RecA [Escherichia coli O157:H7 str. EC4042]
 gi|209397319|ref|YP_002272162.1| protein RecA [Escherichia coli O157:H7 str. EC4115]
 gi|209920138|ref|YP_002294222.1| recombinase A [Escherichia coli SE11]
 gi|215488018|ref|YP_002330449.1| recombinase A [Escherichia coli O127:H6 str. E2348/69]
 gi|217327391|ref|ZP_03443474.1| protein RecA [Escherichia coli O157:H7 str. TW14588]
 gi|218547788|ref|YP_002381579.1| recombinase A [Escherichia fergusonii ATCC 35469]
 gi|218555241|ref|YP_002388154.1| recombinase A [Escherichia coli IAI1]
 gi|218559687|ref|YP_002392600.1| recombinase A [Escherichia coli S88]
 gi|218690821|ref|YP_002399033.1| recombinase A [Escherichia coli ED1a]
 gi|218696290|ref|YP_002403957.1| recombinase A [Escherichia coli 55989]
 gi|218701189|ref|YP_002408818.1| recombinase A [Escherichia coli IAI39]
 gi|218706193|ref|YP_002413712.1| recombinase A [Escherichia coli UMN026]
 gi|238901836|ref|YP_002927632.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia coli BW2952]
 gi|253772446|ref|YP_003035277.1| recombinase A [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162630|ref|YP_003045738.1| recombinase A [Escherichia coli B str. REL606]
 gi|254794641|ref|YP_003079478.1| recombinase A [Escherichia coli O157:H7 str. TW14359]
 gi|256019524|ref|ZP_05433389.1| recombinase A [Shigella sp. D9]
 gi|256024794|ref|ZP_05438659.1| recombinase A [Escherichia sp. 4_1_40B]
 gi|260845341|ref|YP_003223119.1| DNA strand exchange and recombination protein RecA with protease
           and nuclease activity [Escherichia coli O103:H2 str.
           12009]
 gi|260856804|ref|YP_003230695.1| DNA strand exchange and recombination protein RecA with protease
           and nuclease activity [Escherichia coli O26:H11 str.
           11368]
 gi|260869372|ref|YP_003235774.1| DNA strand exchange and recombination protein RecA with protease
           and nuclease activity [Escherichia coli O111:H- str.
           11128]
 gi|261225991|ref|ZP_05940272.1| recombinase A [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256751|ref|ZP_05949284.1| recombinase A [Escherichia coli O157:H7 str. FRIK966]
 gi|291284026|ref|YP_003500844.1| RecA/GFP fusion protein [Escherichia coli O55:H7 str. CB9615]
 gi|293406190|ref|ZP_06650116.1| recA [Escherichia coli FVEC1412]
 gi|298381928|ref|ZP_06991525.1| recA [Escherichia coli FVEC1302]
 gi|301026641|ref|ZP_07190058.1| protein RecA [Escherichia coli MS 196-1]
 gi|306812423|ref|ZP_07446621.1| recombinase A [Escherichia coli NC101]
 gi|307139386|ref|ZP_07498742.1| recombinase A [Escherichia coli H736]
 gi|307314416|ref|ZP_07594021.1| recA protein [Escherichia coli W]
 gi|309786223|ref|ZP_07680851.1| protein RecA [Shigella dysenteriae 1617]
 gi|312965613|ref|ZP_07779843.1| protein RecA [Escherichia coli 2362-75]
 gi|312973092|ref|ZP_07787265.1| protein RecA [Escherichia coli 1827-70]
 gi|331658804|ref|ZP_08359746.1| protein RecA [Escherichia coli TA206]
 gi|331664250|ref|ZP_08365156.1| protein RecA [Escherichia coli TA143]
 gi|331669431|ref|ZP_08370277.1| protein RecA [Escherichia coli TA271]
 gi|331684311|ref|ZP_08384903.1| protein RecA [Escherichia coli H299]
 gi|67471975|sp|P0A7G6|RECA_ECOLI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|67471976|sp|P0A7G7|RECA_ECOL6 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|67471977|sp|P0A7G8|RECA_ECO57 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|67471978|sp|P0A7G9|RECA_SHIFL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|122422732|sp|Q1R801|RECA_ECOUT RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123047968|sp|Q0T1C5|RECA_SHIF8 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123147796|sp|Q0TEI1|RECA_ECOL5 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123558826|sp|Q31X64|RECA_SHIBS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123561810|sp|Q32CM9|RECA_SHIDS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123773466|sp|Q3YYG4|RECA_SHISS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166918709|sp|A7ZQC8|RECA_ECO24 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166918710|sp|A8A3H6|RECA_ECOHS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|189039594|sp|B1IUY0|RECA_ECOLC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226723627|sp|B5Z2B0|RECA_ECO5E RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226723628|sp|B6I685|RECA_ECOSE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226737756|sp|B7MKG8|RECA_ECO45 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226737757|sp|B7NSH9|RECA_ECO7I RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226737758|sp|B7M9D6|RECA_ECO8A RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226737759|sp|B7N6S9|RECA_ECOLU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226737760|sp|B1LQ17|RECA_ECOSM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226737761|sp|B7LW30|RECA_ESCF3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238691761|sp|B2U047|RECA_SHIB3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|254790432|sp|B7UHB7|RECA_ECO27 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|254790433|sp|B7LEB1|RECA_ECO55 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|254790434|sp|B7MYJ9|RECA_ECO81 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|259563334|sp|C4ZYU4|RECA_ECOBW RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|2098390|pdb|2REC|A Chain A, Reca Hexamer Model, Electron Microscopy
 gi|2098391|pdb|2REC|B Chain B, Reca Hexamer Model, Electron Microscopy
 gi|2098392|pdb|2REC|C Chain C, Reca Hexamer Model, Electron Microscopy
 gi|2098393|pdb|2REC|D Chain D, Reca Hexamer Model, Electron Microscopy
 gi|2098394|pdb|2REC|E Chain E, Reca Hexamer Model, Electron Microscopy
 gi|2098395|pdb|2REC|F Chain F, Reca Hexamer Model, Electron Microscopy
 gi|26109501|gb|AAN81704.1|AE016765_106 RecA protein [Escherichia coli CFT073]
 gi|42673|emb|CAA23618.1| recA gene product [Escherichia coli]
 gi|1789051|gb|AAC75741.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia coli str. K-12 substr.
           MG1655]
 gi|6006602|emb|CAB56806.1| recA [Shigella flexneri]
 gi|13363027|dbj|BAB36979.1| RecA protein [Escherichia coli O157:H7 str. Sakai]
 gi|30042315|gb|AAP18040.1| DNA-dependent ATPase, DNA- and ATP-dependent coprotease [Shigella
           flexneri 2a str. 2457T]
 gi|56383715|gb|AAN44214.2| DNA-dependent ATPase, DNA- and ATP-dependent coprotease [Shigella
           flexneri 2a str. 301]
 gi|73856741|gb|AAZ89448.1| DNA-dependent ATPase [Shigella sonnei Ss046]
 gi|81242216|gb|ABB62926.1| DNA-dependent ATPase, DNA- and ATP-dependent coprotease [Shigella
           dysenteriae Sd197]
 gi|81246636|gb|ABB67344.1| DNA-dependent ATPase, DNA- and ATP-dependent coprotease [Shigella
           boydii Sb227]
 gi|85675524|dbj|BAA16561.2| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia coli str. K12 substr.
           W3110]
 gi|91073632|gb|ABE08513.1| RecA protein [Escherichia coli UTI89]
 gi|110344411|gb|ABG70648.1| RecA protein [Escherichia coli 536]
 gi|110616223|gb|ABF04890.1| recombinase A [Shigella flexneri 5 str. 8401]
 gi|157067825|gb|ABV07080.1| protein RecA [Escherichia coli HS]
 gi|157078853|gb|ABV18561.1| protein RecA [Escherichia coli E24377A]
 gi|169753983|gb|ACA76682.1| recA protein [Escherichia coli ATCC 8739]
 gi|170520937|gb|ACB19115.1| protein RecA [Escherichia coli SMS-3-5]
 gi|187427964|gb|ACD07238.1| protein RecA [Shigella boydii CDC 3083-94]
 gi|187769610|gb|EDU33454.1| protein RecA [Escherichia coli O157:H7 str. EC4196]
 gi|188015763|gb|EDU53885.1| protein RecA [Escherichia coli O157:H7 str. EC4113]
 gi|188490272|gb|EDU65375.1| protein RecA [Escherichia coli 53638]
 gi|189003321|gb|EDU72307.1| protein RecA [Escherichia coli O157:H7 str. EC4076]
 gi|189357312|gb|EDU75731.1| protein RecA [Escherichia coli O157:H7 str. EC4401]
 gi|189362165|gb|EDU80584.1| protein RecA [Escherichia coli O157:H7 str. EC4486]
 gi|189366842|gb|EDU85258.1| protein RecA [Escherichia coli O157:H7 str. EC4501]
 gi|189372187|gb|EDU90603.1| protein RecA [Escherichia coli O157:H7 str. EC869]
 gi|189377451|gb|EDU95867.1| protein RecA [Escherichia coli O157:H7 str. EC508]
 gi|190902886|gb|EDV62614.1| protein RecA [Escherichia coli B7A]
 gi|190908253|gb|EDV67843.1| protein RecA [Escherichia coli F11]
 gi|192927309|gb|EDV81928.1| protein RecA [Escherichia coli E22]
 gi|192957051|gb|EDV87502.1| protein RecA [Escherichia coli E110019]
 gi|194414094|gb|EDX30370.1| protein RecA [Escherichia coli B171]
 gi|194418721|gb|EDX34807.1| protein RecA [Shigella dysenteriae 1012]
 gi|194422126|gb|EDX38129.1| protein RecA [Escherichia coli 101-1]
 gi|208727717|gb|EDZ77318.1| protein RecA [Escherichia coli O157:H7 str. EC4206]
 gi|208733173|gb|EDZ81860.1| protein RecA [Escherichia coli O157:H7 str. EC4045]
 gi|208740341|gb|EDZ88023.1| protein RecA [Escherichia coli O157:H7 str. EC4042]
 gi|209158719|gb|ACI36152.1| protein RecA [Escherichia coli O157:H7 str. EC4115]
 gi|209762078|gb|ACI79351.1| RecA protein [Escherichia coli]
 gi|209762080|gb|ACI79352.1| RecA protein [Escherichia coli]
 gi|209762082|gb|ACI79353.1| RecA protein [Escherichia coli]
 gi|209762084|gb|ACI79354.1| RecA protein [Escherichia coli]
 gi|209762086|gb|ACI79355.1| RecA protein [Escherichia coli]
 gi|209913397|dbj|BAG78471.1| recombinase/peptidase [Escherichia coli SE11]
 gi|215266090|emb|CAS10510.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217319758|gb|EEC28183.1| protein RecA [Escherichia coli O157:H7 str. TW14588]
 gi|218353022|emb|CAU98847.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia coli 55989]
 gi|218355329|emb|CAQ87936.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia fergusonii ATCC 35469]
 gi|218362009|emb|CAQ99616.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia coli IAI1]
 gi|218366456|emb|CAR04208.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia coli S88]
 gi|218371175|emb|CAR19006.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia coli IAI39]
 gi|218428385|emb|CAR09165.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia coli ED1a]
 gi|218433290|emb|CAR14190.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia coli UMN026]
 gi|222034392|emb|CAP77134.1| Protein recA [Escherichia coli LF82]
 gi|238860843|gb|ACR62841.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia coli BW2952]
 gi|242378256|emb|CAQ33031.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia coli BL21(DE3)]
 gi|253323490|gb|ACT28092.1| recA protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974531|gb|ACT40202.1| recombinase A [Escherichia coli B str. REL606]
 gi|253978698|gb|ACT44368.1| recombinase A [Escherichia coli BL21(DE3)]
 gi|254594041|gb|ACT73402.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia coli O157:H7 str.
           TW14359]
 gi|257755453|dbj|BAI26955.1| DNA strand exchange and recombination protein RecA with protease
           and nuclease activity [Escherichia coli O26:H11 str.
           11368]
 gi|257760488|dbj|BAI31985.1| DNA strand exchange and recombination protein RecA with protease
           and nuclease activity [Escherichia coli O103:H2 str.
           12009]
 gi|257765728|dbj|BAI37223.1| DNA strand exchange and recombination protein RecA with protease
           and nuclease activity [Escherichia coli O111:H- str.
           11128]
 gi|281179702|dbj|BAI56032.1| recombinase/peptidase [Escherichia coli SE15]
 gi|281602069|gb|ADA75053.1| recombinase A [Shigella flexneri 2002017]
 gi|284822314|gb|ADB98013.1| RecA [Helper vector pTKRED]
 gi|284922635|emb|CBG35723.1| RecA protein (recombinase A) [Escherichia coli 042]
 gi|290763899|gb|ADD57860.1| RecA/GFP fusion protein [Escherichia coli O55:H7 str. CB9615]
 gi|291426196|gb|EFE99228.1| recA [Escherichia coli FVEC1412]
 gi|294490461|gb|ADE89217.1| protein RecA [Escherichia coli IHE3034]
 gi|298277068|gb|EFI18584.1| recA [Escherichia coli FVEC1302]
 gi|299879628|gb|EFI87839.1| protein RecA [Escherichia coli MS 196-1]
 gi|305854461|gb|EFM54899.1| recombinase A [Escherichia coli NC101]
 gi|306905984|gb|EFN36505.1| recA protein [Escherichia coli W]
 gi|307554673|gb|ADN47448.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia coli ABU 83972]
 gi|307625732|gb|ADN70036.1| recombinase A [Escherichia coli UM146]
 gi|308925968|gb|EFP71447.1| protein RecA [Shigella dysenteriae 1617]
 gi|309703058|emb|CBJ02390.1| RecA protein (recombinase A) [Escherichia coli ETEC H10407]
 gi|310333034|gb|EFQ00248.1| protein RecA [Escherichia coli 1827-70]
 gi|312289762|gb|EFR17652.1| protein RecA [Escherichia coli 2362-75]
 gi|312947227|gb|ADR28054.1| recombinase A [Escherichia coli O83:H1 str. NRG 857C]
 gi|313648348|gb|EFS12792.1| protein RecA [Shigella flexneri 2a str. 2457T]
 gi|315061975|gb|ADT76302.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia coli W]
 gi|315615084|gb|EFU95721.1| protein RecA [Escherichia coli 3431]
 gi|320180881|gb|EFW55804.1| RecA protein [Shigella boydii ATCC 9905]
 gi|320186486|gb|EFW61214.1| RecA protein [Shigella flexneri CDC 796-83]
 gi|320189028|gb|EFW63687.1| RecA protein [Escherichia coli O157:H7 str. EC1212]
 gi|320194839|gb|EFW69468.1| RecA protein [Escherichia coli WV_060327]
 gi|320197702|gb|EFW72311.1| RecA protein [Escherichia coli EC4100B]
 gi|320640342|gb|EFX09881.1| recombinase A [Escherichia coli O157:H7 str. G5101]
 gi|320645889|gb|EFX14870.1| recombinase A [Escherichia coli O157:H- str. 493-89]
 gi|320651189|gb|EFX19624.1| recombinase A [Escherichia coli O157:H- str. H 2687]
 gi|320656739|gb|EFX24627.1| recombinase A [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320662282|gb|EFX29679.1| recombinase A [Escherichia coli O55:H7 str. USDA 5905]
 gi|320667333|gb|EFX34291.1| recombinase A [Escherichia coli O157:H7 str. LSU-61]
 gi|323154910|gb|EFZ41102.1| protein RecA [Escherichia coli EPECa14]
 gi|323159800|gb|EFZ45772.1| protein RecA [Escherichia coli E128010]
 gi|323167130|gb|EFZ52848.1| protein RecA [Shigella sonnei 53G]
 gi|323173019|gb|EFZ58650.1| protein RecA [Escherichia coli LT-68]
 gi|323180117|gb|EFZ65669.1| protein RecA [Escherichia coli 1180]
 gi|323183222|gb|EFZ68619.1| protein RecA [Escherichia coli 1357]
 gi|323188420|gb|EFZ73706.1| protein RecA [Escherichia coli RN587/1]
 gi|323377443|gb|ADX49711.1| recA protein [Escherichia coli KO11]
 gi|323935747|gb|EGB32061.1| recA bacterial DNA recombination protein [Escherichia coli E1520]
 gi|323941471|gb|EGB37654.1| recA DNA recombination protein [Escherichia coli E482]
 gi|323946423|gb|EGB42451.1| recA bacterial DNA recombination protein [Escherichia coli H120]
 gi|323951083|gb|EGB46959.1| recA DNA recombination protein [Escherichia coli H252]
 gi|323957091|gb|EGB52816.1| recA DNA recombination protein [Escherichia coli H263]
 gi|323960642|gb|EGB56268.1| recA DNA recombination protein [Escherichia coli H489]
 gi|323966843|gb|EGB62272.1| recA DNA recombination protein [Escherichia coli M863]
 gi|323971512|gb|EGB66746.1| recA DNA recombination protein [Escherichia coli TA007]
 gi|323978693|gb|EGB73775.1| recA DNA recombination protein [Escherichia coli TW10509]
 gi|324111327|gb|EGC05309.1| recA DNA recombination protein [Escherichia fergusonii B253]
 gi|324119948|gb|EGC13826.1| recA DNA recombination protein [Escherichia coli E1167]
 gi|326339232|gb|EGD63047.1| RecA protein [Escherichia coli O157:H7 str. 1044]
 gi|326342884|gb|EGD66652.1| RecA protein [Escherichia coli O157:H7 str. 1125]
 gi|327251417|gb|EGE63103.1| protein RecA [Escherichia coli STEC_7v]
 gi|330908730|gb|EGH37244.1| RecA protein [Escherichia coli AA86]
 gi|331053386|gb|EGI25415.1| protein RecA [Escherichia coli TA206]
 gi|331058181|gb|EGI30162.1| protein RecA [Escherichia coli TA143]
 gi|331063099|gb|EGI35012.1| protein RecA [Escherichia coli TA271]
 gi|331077926|gb|EGI49132.1| protein RecA [Escherichia coli H299]
 gi|332087417|gb|EGI92545.1| protein RecA [Shigella boydii 5216-82]
 gi|332088716|gb|EGI93829.1| protein RecA [Shigella dysenteriae 155-74]
 gi|332091903|gb|EGI96981.1| protein RecA [Shigella boydii 3594-74]
          Length = 353

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 213/348 (61%), Positives = 283/348 (81%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            N+  +L++N E A+ IE  +R+      +S       +++  A+ ++
Sbjct: 304 ANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVAETNE 351


>gi|313884175|ref|ZP_07817941.1| RecA protein [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620622|gb|EFR32045.1| RecA protein [Eremococcus coleocola ACS-139-V-Col8]
          Length = 346

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 198/347 (57%), Positives = 263/347 (75%), Gaps = 2/347 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   ++ KAL+ AL  I++ +GKGAIM+LG +      I  + +GSL LD+ALG+GG+P+
Sbjct: 1   MVNTERQKALDLALKNIEKNFGKGAIMKLGEKTDT--KISTIPTGSLALDVALGVGGYPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA  LGVD+  LL+SQ
Sbjct: 59  GRIIECYGPESSGKTTVALHAIAEVQKQGGTAAFIDAEHALDPDYAANLGVDVDELLLSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQ LEI D LV SGAVDIIV+DSVAAL PRAEIEGDMG++  G+QARLMSQALRKL
Sbjct: 119 PDTGEQGLEIADALVASGAVDIIVVDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + S++++K I  FINQ+R K+G+MFG+PETT GG ALKFYS++RL++RR  +IK+   + 
Sbjct: 179 SGSVNKTKTICFFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAETIKNSGEMI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR+KVVKNK+A PFK+   DIMYG+GIS  GEL+D+     I++K+G+W+S+  +R+
Sbjct: 239 GNRTRIKVVKNKVAPPFKEAMVDIMYGQGISQEGELVDMAADLDIINKAGSWYSYGDERI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           GQGREN+K FL +N  + E I S +R +  +   +     + +T+ D
Sbjct: 299 GQGRENAKQFLIDNPAVREEINSKVRAHYNIGPKNSEAAESESTELD 345


>gi|167630439|ref|YP_001680938.1| reca protein [Heliobacterium modesticaldum Ice1]
 gi|238687993|sp|B0TII6|RECA_HELMI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|167593179|gb|ABZ84927.1| reca protein [Heliobacterium modesticaldum Ice1]
          Length = 346

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 206/322 (63%), Positives = 264/322 (81%), Gaps = 1/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL+ AL+ I++ +GKG+IM+LG   +    +EV+ +GS+ LD+ALGIGG P+GRIV
Sbjct: 6   NKLQALQQALNSIEKAFGKGSIMRLGEASAKLL-VEVIPTGSIALDMALGIGGVPRGRIV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA++QK GG  AF+DAEHALD +YAR LGVD+ NLL+SQPDTG
Sbjct: 65  EVYGPESSGKTTVALHIIAEAQKMGGMAAFIDAEHALDPVYARNLGVDIDNLLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+D++VIDSVAAL P+AEI+G+MG++  G+QARLMSQALRKLT  +
Sbjct: 125 EQALEICEALVRSGAIDVVVIDSVAALVPKAEIDGEMGDAHVGLQARLMSQALRKLTGVV 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+SK   +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++R+V ++K    + G++T
Sbjct: 185 SKSKTCCLFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRKVDTLKQGSDMIGSRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK  +FDIMYGEGIS  G L+DL V   IV+KSGAW+S+KG RLGQGR
Sbjct: 245 RVKVVKNKVAPPFKVADFDIMYGEGISREGSLVDLAVDMGIVEKSGAWYSYKGDRLGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLR 332
           EN K FLR +  +A  IES++R
Sbjct: 305 ENVKEFLRNHPALAAEIESMIR 326


>gi|74318215|ref|YP_315955.1| recombinase A [Thiobacillus denitrificans ATCC 25259]
 gi|74057710|gb|AAZ98150.1| RecA DNA recombination protein [Thiobacillus denitrificans ATCC
           25259]
          Length = 364

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 220/349 (63%), Positives = 284/349 (81%), Gaps = 7/349 (2%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             DKSKAL AAL QI++ +GKG++M+LG    +   I+ VS+GSLGLDIALG+GG P+GR
Sbjct: 22  TDDKSKALAAALGQIEKQFGKGSVMRLGDH-DVSRDIQAVSTGSLGLDIALGVGGLPRGR 80

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGVD+ NLL+SQPD
Sbjct: 81  VIEIYGPESSGKTTLTLQVIAEMQKMGGTAAFIDAEHALDPSYAHKLGVDVDNLLVSQPD 140

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DMLVRSG+VD++V+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT+
Sbjct: 141 TGEQALEIADMLVRSGSVDVVVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLTA 200

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK  D I GN
Sbjct: 201 NIKRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKKGDEIIGN 260

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T+VKVVKNK++ PFK+  FDI+YG+GIS  GE+I+LGV   +VDKSGAW+++ G+++GQ
Sbjct: 261 ETKVKVVKNKVSPPFKEAYFDILYGQGISREGEIIELGVAHKLVDKSGAWYAYNGEKIGQ 320

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           G++N++ FL+E+ EIA  IE+ +R   G+        P I  +D+ + +
Sbjct: 321 GKDNAREFLKEHPEIAHEIEAKVRAAVGV------NNPTIAVEDEDEVE 363


>gi|238798515|ref|ZP_04641993.1| hypothetical protein ymoll0001_9180 [Yersinia mollaretii ATCC
           43969]
 gi|238717602|gb|EEQ09440.1| hypothetical protein ymoll0001_9180 [Yersinia mollaretii ATCC
           43969]
          Length = 354

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 209/350 (59%), Positives = 273/350 (78%), Gaps = 2/350 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQRAGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGDVVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
            N+  +L+EN  +A  ++  LR+      +           D+ D+   +
Sbjct: 304 ANASNYLKENPAVAAELDKKLREMLLNGGNGEQPVATATVADETDETSEE 353


>gi|317493954|ref|ZP_07952371.1| recA bacterial DNA recombination protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316918281|gb|EFV39623.1| recA bacterial DNA recombination protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 350

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 219/349 (62%), Positives = 276/349 (79%), Gaps = 2/349 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI++ +GKG+IM+LG   ++   I+ VS+GSL LD+ALGIGG P GR+V
Sbjct: 4   NKQRALAAALGQIEKQFGKGSIMRLGDTQTL--DIDSVSTGSLSLDVALGIGGLPMGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA +Q  G TCAF+DAEHALD IYA KLGV + +LLISQPDTG
Sbjct: 62  EIFGPESSGKTTLTLSVIASAQAAGKTCAFIDAEHALDPIYAGKLGVQVDDLLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 122 EQALEICDALVRSGAVDVIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IKD D + GN+T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKDGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG GIS   ELIDLGVK  +VDKSGAW+++ G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGAGISKESELIDLGVKHKLVDKSGAWYAYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
            NS  +L+EN  I   +++ LR+     A +       +  ++  +DD 
Sbjct: 302 SNSMKYLQENPAIRAELDTKLRELLLSHAAAENANHKPSADEELLEDDA 350


>gi|109453452|gb|ABG34206.1| RecA [Salmonella enterica subsp. diarizonae]
          Length = 353

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 210/348 (60%), Positives = 281/348 (80%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD++V+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVLVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            N+  +L+EN   A+ IE  +R+      ++       +++  A+ ++
Sbjct: 304 ANATTWLKENPATAKEIEKKVRELLLSNQNATPDFSVDDSEGVAETNE 351


>gi|47571268|gb|AAT35791.1| RecA [Mycobacterium simiae]
          Length = 321

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 203/322 (63%), Positives = 263/322 (81%), Gaps = 2/322 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 2   PDREKALELAMAQIEKSYGKGSVMRLGDE--MRQPISVIPTGSIALDVALGIGGLPRGRV 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 60  VEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T +
Sbjct: 120 GEQALEIADMLIRSGALDILVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGA 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+
Sbjct: 180 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNR 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG GIS  G LID+GV    + KSG+WF+++G++LGQG
Sbjct: 240 TRVKVVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGSWFTYEGEQLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLL 331
           +EN + FL EN +IA  IE  +
Sbjct: 300 KENVRNFLMENADIANEIEKKI 321


>gi|10121180|gb|AAG13102.1|AF143787_1 RecA [Burkholderia cepacia]
 gi|10121182|gb|AAG13103.1|AF143788_1 RecA [Burkholderia cepacia]
 gi|116119160|gb|ABJ74750.1| RecA [Burkholderia sp. M297]
 gi|126256480|gb|ABO09805.1| RecA [Burkholderia sp. Y6]
          Length = 347

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 233/350 (66%), Positives = 296/350 (84%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 2   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 121 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 241 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ G+VA   + + A N  +  D+++
Sbjct: 301 GKDNAREFLRENPEIAREIENRIRESLGVVA---MPDGAGNEAEAMDEEE 347


>gi|325577038|ref|ZP_08147579.1| recombination protein A [Haemophilus parainfluenzae ATCC 33392]
 gi|325160894|gb|EGC73014.1| recombination protein A [Haemophilus parainfluenzae ATCC 33392]
          Length = 351

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 223/347 (64%), Positives = 279/347 (80%), Gaps = 2/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E VS+GSLGLD+ALGIGG P GRIV
Sbjct: 6   EKQKALAAALGQIEKQFGKGSIMKLGDTQAL--DVESVSTGSLGLDVALGIGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IAQ+QK G TCAF+DAEHALD IYA KLGVD+K LL+SQPD G
Sbjct: 64  EIFGPESSGKTTLTLSVIAQAQKVGKTCAFIDAEHALDPIYAAKLGVDVKELLVSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVD++++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT  I
Sbjct: 124 EQALEICDALVRSGAVDVVIVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLTGQI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR GS+KD D + GN+T
Sbjct: 184 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKDGDEVIGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PF+QV+F I+YGEGIS  GELI+LGVK  +V+KSGAW+++ G+++GQG+
Sbjct: 244 RVKVVKNKLAAPFRQVDFQILYGEGISKAGELIELGVKHKLVEKSGAWYAYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
            N+  +L EN   ++ +E+ LR       +  L        DDA+ D
Sbjct: 304 ANAMKWLHENPAKSDELEAKLRAELVANPEQALMADIEQPTDDAESD 350


>gi|157826209|ref|YP_001493929.1| recombinase A [Rickettsia akari str. Hartford]
 gi|157800167|gb|ABV75421.1| recombinase A [Rickettsia akari str. Hartford]
          Length = 362

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 225/341 (65%), Positives = 285/341 (83%), Gaps = 2/341 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K M+  DK +A+ AAL QI++ YGKG++M+LG + ++   IE VS+GSLGLDIALGIGG 
Sbjct: 18  KFMSNTDKERAIAAALVQIEKSYGKGSVMKLGQRPNV--DIEAVSTGSLGLDIALGIGGV 75

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA+KLGV++  L+I
Sbjct: 76  PKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELII 135

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEITD L+RSG +D+I+IDSVAAL P++EIEG+MG++    QARLMSQALR
Sbjct: 136 SQPDTGEQALEITDTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALR 195

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ 
Sbjct: 196 KLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEE 255

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + G+QTRVKVVKNK++ PFK  +FDIMYG GIS  GE+IDLGVK  IV+KSG+WFS+   
Sbjct: 256 VIGSQTRVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYNNV 315

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           R+GQGREN K +L+E+ +I+  IE ++R+ +  + +  L +
Sbjct: 316 RIGQGRENVKQYLKEHPQISNEIEKIIREKSSKIININLDQ 356


>gi|109453464|gb|ABG34212.1| RecA [Salmonella enterica subsp. houtenae]
 gi|109453466|gb|ABG34213.1| RecA [Salmonella enterica subsp. houtenae]
 gi|109453468|gb|ABG34214.1| RecA [Salmonella enterica subsp. houtenae]
 gi|109453470|gb|ABG34215.1| RecA [Salmonella enterica subsp. houtenae]
 gi|109453476|gb|ABG34218.1| RecA [Salmonella enterica subsp. houtenae]
 gi|109453478|gb|ABG34219.1| RecA [Salmonella enterica subsp. houtenae]
 gi|109453480|gb|ABG34220.1| RecA [Salmonella enterica subsp. houtenae]
 gi|109453482|gb|ABG34221.1| RecA [Salmonella enterica subsp. houtenae]
 gi|109453484|gb|ABG34222.1| RecA [Salmonella enterica subsp. houtenae]
 gi|109453486|gb|ABG34223.1| RecA [Salmonella enterica subsp. houtenae]
          Length = 353

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 211/348 (60%), Positives = 281/348 (80%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            N+  +L+EN   A+ IE  +R+      ++       +++  A+ ++
Sbjct: 304 ANATTWLKENPATAKEIEKKVRELLLSNQNATPDFAVDDSEGVAETNE 351


>gi|90580349|ref|ZP_01236156.1| recombinase A [Vibrio angustum S14]
 gi|90438651|gb|EAS63835.1| recombinase A [Vibrio angustum S14]
          Length = 349

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 217/346 (62%), Positives = 274/346 (79%), Gaps = 2/346 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L TIA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLETIAAAQRKGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +V+K+GAW+S++G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKQAETQILYGQGFNRNGELIDLGVKHKLVEKAGAWYSYQGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
            NS  +L EN  IA  IE+ LR           Q    N+  + D+
Sbjct: 302 ANSCKYLVENPAIAAEIETKLRDLLLTPVTEGDQVDEKNSDIEEDE 347


>gi|51595173|ref|YP_069364.1| recombinase A [Yersinia pseudotuberculosis IP 32953]
 gi|153947092|ref|YP_001402197.1| recombinase A [Yersinia pseudotuberculosis IP 31758]
 gi|186894188|ref|YP_001871300.1| recombinase A [Yersinia pseudotuberculosis PB1/+]
 gi|59798204|sp|Q66E70|RECA_YERPS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166918717|sp|A7FLR9|RECA_YERP3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238691404|sp|B2K5X7|RECA_YERPB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|51588455|emb|CAH20063.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Yersinia pseudotuberculosis IP 32953]
 gi|152958587|gb|ABS46048.1| protein RecA [Yersinia pseudotuberculosis IP 31758]
 gi|186697214|gb|ACC87843.1| recA protein [Yersinia pseudotuberculosis PB1/+]
          Length = 356

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 217/353 (61%), Positives = 278/353 (78%), Gaps = 3/353 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGDVVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N+  +L+EN  IA  ++  LR+   L   +  Q  A  T + AD  D  N E
Sbjct: 304 ANASNYLKENPAIAAELDKKLREML-LNGGNGEQPVAAATAEFADGVDETNEE 355


>gi|10121188|gb|AAG13106.1|AF143791_1 RecA [Burkholderia vietnamiensis]
 gi|10121192|gb|AAG13108.1|AF143793_1 RecA [Burkholderia vietnamiensis]
 gi|14572548|gb|AAK64608.1| RecA [Burkholderia cepacia]
 gi|116119168|gb|ABJ74754.1| RecA [Burkholderia sp. R398]
          Length = 347

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 231/331 (69%), Positives = 288/331 (87%), Gaps = 1/331 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 2   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 121 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 241 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           G++N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 301 GKDNAREFLRENPEIAREIENRIRESLGVVA 331


>gi|6225930|sp|Q9ZFF6|RECA_SHISO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|3859589|gb|AAC72856.1| recombinase/peptidase [Shigella sonnei]
          Length = 353

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 213/348 (61%), Positives = 282/348 (81%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q  G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQLEGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            N+  +L++N E A+ IE  +R+      +S       +++  A+ ++
Sbjct: 304 ANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVAETNE 351


>gi|312884635|ref|ZP_07744338.1| recombinase A [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367727|gb|EFP95276.1| recombinase A [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 348

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 216/353 (61%), Positives = 277/353 (78%), Gaps = 10/353 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIKD D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKQAETQILYGQGFNREGELIDLGVKHKLIEKAGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N+  FLREN E ++ I+S LRQ        +L  P    +DDA        E
Sbjct: 302 ANAGKFLRENPEASQAIDSKLRQ--------MLLSPVELQEDDATLGQVPEQE 346


>gi|194014353|ref|ZP_03052970.1| protein RecA [Bacillus pumilus ATCC 7061]
 gi|194013379|gb|EDW22944.1| protein RecA [Bacillus pumilus ATCC 7061]
          Length = 346

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 210/336 (62%), Positives = 268/336 (79%), Gaps = 2/336 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG +      I  V SGSL LD ALGIGG+P+GR
Sbjct: 1   MSDRQAALDMALKQIEKQFGKGSIMKLGERTDTR--ISTVPSGSLALDTALGIGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT+ALH IA+ Q+ GG  AF+DAEHALD +YA+KLGV++  LL+SQPD
Sbjct: 59  IIEVYGPESSGKTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDI+VIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K  + I GN
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIMGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TR+KVVKNK+A PF+  E DIMYGEGIS  GE+IDLG +  IV KSGAW+S++ +RLGQ
Sbjct: 239 KTRIKVVKNKVAPPFRIAEVDIMYGEGISKEGEIIDLGSELDIVQKSGAWYSYQEERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
           GREN+K FL+EN +I   I+  +R++ GL  + +  
Sbjct: 299 GRENAKQFLKENKDILLMIQEQIREHYGLDTNGVKA 334


>gi|206559346|ref|YP_002230107.1| recombinase A [Burkholderia cenocepacia J2315]
 gi|205556004|sp|P0C7V2|RECA_BURCE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238693105|sp|B4EBY3|RECA_BURCJ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|10121168|gb|AAG13096.1|AF143781_1 RecA [Burkholderia cepacia]
 gi|10121170|gb|AAG13097.1|AF143782_1 RecA [Burkholderia cepacia]
 gi|216911|dbj|BAA14148.1| RecA protein [Burkholderia cepacia]
 gi|47054184|gb|AAT09202.1| recombination protein A [Burkholderia cepacia]
 gi|198035384|emb|CAR51260.1| putative recombinase A [Burkholderia cenocepacia J2315]
          Length = 347

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 234/350 (66%), Positives = 296/350 (84%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 2   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 121 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 241 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ G+VA   + + A N  +  D+++
Sbjct: 301 GKDNAREFLRENPEIAREIENRIRESLGVVA---MPDGAGNEAEAMDEEE 347


>gi|153954070|ref|YP_001394835.1| recombinase A [Clostridium kluyveri DSM 555]
 gi|219854683|ref|YP_002471805.1| hypothetical protein CKR_1340 [Clostridium kluyveri NBRC 12016]
 gi|146346951|gb|EDK33487.1| RecA [Clostridium kluyveri DSM 555]
 gi|219568407|dbj|BAH06391.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 363

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 217/359 (60%), Positives = 285/359 (79%), Gaps = 7/359 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +K +A+E+A+ QI++ +GKGAIM+LG    +   ++VVS+G L LDIALGIGG P+GR
Sbjct: 5   NNEKLQAIESAMLQIEKQFGKGAIMKLGENSIL--NVDVVSTGCLDLDIALGIGGVPRGR 62

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EI+GPESSGKTT+ALH IA++QKTGG  AF+DAEHALD  YA+ LGVD++NL++SQPD
Sbjct: 63  VIEIFGPESSGKTTVALHIIAEAQKTGGAAAFIDAEHALDPSYAKNLGVDIENLIVSQPD 122

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRS A+D++V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLTS
Sbjct: 123 TGEQALEIAEALVRSNAIDVLVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTS 182

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           SI++SKC+ +FINQ+R K+G+MFG+PE T GG ALKFYSSVR+D+RR+ SIK  D++ GN
Sbjct: 183 SINKSKCVTIFINQLREKVGIMFGNPEVTPGGRALKFYSSVRMDVRRIDSIKQGDTMVGN 242

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T+VKV+KNK+A PFKQ EFDIMY +GIS  G ++D+GV+   V KSGAWFS+K  RLGQ
Sbjct: 243 RTKVKVIKNKVAPPFKQAEFDIMYNQGISREGNVLDVGVREDFVQKSGAWFSYKEIRLGQ 302

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVAD-----SLLQEPAINTKDDADKDDTDNV 362
           GREN+K FLREN +I   IE+ +R+   L  D     S   +   +TK+D  K D+ N+
Sbjct: 303 GRENAKQFLRENTDILFEIENKIREKYNLPIDKSNLSSDKNQNEKSTKEDNKKQDSKNL 361


>gi|10121166|gb|AAG13095.1|AF143780_1 RecA [Burkholderia cepacia]
          Length = 347

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 233/350 (66%), Positives = 296/350 (84%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 2   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 121 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGG+ALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGSALKFYSSVRLDIRRIGSIKKNDEVIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 241 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ G+VA   + + A N  +  D+++
Sbjct: 301 GKDNAREFLRENPEIAREIENRIRESLGVVA---MPDGAGNEAEAMDEEE 347


>gi|320173449|gb|EFW48648.1| RecA protein [Shigella dysenteriae CDC 74-1112]
          Length = 353

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 213/348 (61%), Positives = 283/348 (81%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARIMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            N+  +L++N E A+ IE  +R+      +S       +++  A+ ++
Sbjct: 304 ANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVAETNE 351


>gi|242133676|gb|ACS87949.1| RecA [Burkholderia cepacia]
          Length = 346

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 231/350 (66%), Positives = 295/350 (84%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLG+++  LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGMNVPELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 120 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 180 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 240 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ G+V+   + +   N  +  D+++
Sbjct: 300 GKDNAREFLRENPEIAREIENRIRESLGVVS---MPDGVANEAEAMDEEE 346


>gi|30313400|gb|AAM55292.1| RecA [Burkholderia cepacia]
          Length = 347

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 233/350 (66%), Positives = 297/350 (84%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 2   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 121 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 241 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ G+VA   + + A N  +  D+++
Sbjct: 301 GKDNAREFLRENPEIAREIENRIRESLGVVA---MPDGADNEAEAMDEEE 347


>gi|300780995|ref|ZP_07090849.1| recombination protein A [Corynebacterium genitalium ATCC 33030]
 gi|300532702|gb|EFK53763.1| recombination protein A [Corynebacterium genitalium ATCC 33030]
          Length = 396

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 213/369 (57%), Positives = 280/369 (75%), Gaps = 9/369 (2%)

Query: 1   MDYRKEMNIV--DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIA 58
           M  +K+ +    D+  AL+AA++ I++ +GKGAIM+LG        I+ +SSG+  +D+A
Sbjct: 24  MATKKKASNTGNDRQNALDAAMAMIEKDFGKGAIMRLGDDNR--PPIQAISSGNTAVDVA 81

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LGIGG+P+GRIVEIYGPESSGKTT+ALH IA++Q+ GG  AF+DAEHALD  YA+KLGVD
Sbjct: 82  LGIGGWPRGRIVEIYGPESSGKTTVALHAIAEAQRAGGIAAFIDAEHALDPEYAKKLGVD 141

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
             NLL+SQPDTGEQALEI DMLVRSGA+D+IVIDSVAALTP+AEIEG+MG+S  G+QARL
Sbjct: 142 TDNLLVSQPDTGEQALEIADMLVRSGAIDMIVIDSVAALTPKAEIEGEMGDSHVGLQARL 201

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRK+T ++  S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR D+RR+ +
Sbjct: 202 MSQALRKMTGALYNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDVRRIQT 261

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           +KD     GN+TR+K+VKNK++ PFK  EFDIMYGEGIS    +ID+GV   I+ KSG+W
Sbjct: 262 LKDGQDSIGNRTRLKIVKNKVSPPFKVAEFDIMYGEGISRESSIIDMGVDNGIIKKSGSW 321

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA----DSLLQEPAINTKD-D 353
           F+++G +LGQG+E ++IFL+EN E+A  +E  + +  G+      D L  +P     + D
Sbjct: 322 FTYEGDQLGQGKEKARIFLKENPELANELERKIFEKLGVGEFAGQDQLSDDPVDMVPNID 381

Query: 354 ADKDDTDNV 362
            D D+ D +
Sbjct: 382 FDDDEADEL 390


>gi|242133660|gb|ACS87941.1| RecA [Burkholderia cepacia]
          Length = 345

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 232/349 (66%), Positives = 295/349 (84%), Gaps = 4/349 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 120 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 180 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 240 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           G++N++ FLREN EIA  IE+ +R++ G+VA   + +  +N  +  D++
Sbjct: 300 GKDNAREFLRENPEIAREIENRIRESLGVVA---MPDGVVNEAEAMDEE 345


>gi|117624930|ref|YP_853918.1| recombinase A [Escherichia coli APEC O1]
 gi|227888235|ref|ZP_04006040.1| recombination protein A [Escherichia coli 83972]
 gi|237706681|ref|ZP_04537162.1| recombinase A [Escherichia sp. 3_2_53FAA]
 gi|254037738|ref|ZP_04871796.1| recombinase A [Escherichia sp. 1_1_43]
 gi|293412054|ref|ZP_06654777.1| RecA protein [Escherichia coli B354]
 gi|293415948|ref|ZP_06658588.1| RecA protein [Escherichia coli B185]
 gi|293449012|ref|ZP_06663433.1| RecA protein [Escherichia coli B088]
 gi|300815898|ref|ZP_07096122.1| protein RecA [Escherichia coli MS 107-1]
 gi|300820473|ref|ZP_07100624.1| protein RecA [Escherichia coli MS 119-7]
 gi|300899934|ref|ZP_07118140.1| protein RecA [Escherichia coli MS 198-1]
 gi|300906804|ref|ZP_07124485.1| protein RecA [Escherichia coli MS 84-1]
 gi|300919275|ref|ZP_07135793.1| protein RecA [Escherichia coli MS 115-1]
 gi|300924254|ref|ZP_07140239.1| protein RecA [Escherichia coli MS 182-1]
 gi|300930552|ref|ZP_07145947.1| protein RecA [Escherichia coli MS 187-1]
 gi|300941068|ref|ZP_07155584.1| protein RecA [Escherichia coli MS 21-1]
 gi|300947028|ref|ZP_07161251.1| protein RecA [Escherichia coli MS 116-1]
 gi|300954933|ref|ZP_07167349.1| protein RecA [Escherichia coli MS 175-1]
 gi|300975104|ref|ZP_07172871.1| protein RecA [Escherichia coli MS 200-1]
 gi|300976923|ref|ZP_07173675.1| protein RecA [Escherichia coli MS 45-1]
 gi|301027054|ref|ZP_07190431.1| protein RecA [Escherichia coli MS 69-1]
 gi|301049552|ref|ZP_07196507.1| protein RecA [Escherichia coli MS 185-1]
 gi|301305416|ref|ZP_07211510.1| protein RecA [Escherichia coli MS 124-1]
 gi|301326276|ref|ZP_07219652.1| protein RecA [Escherichia coli MS 78-1]
 gi|301645325|ref|ZP_07245273.1| protein RecA [Escherichia coli MS 146-1]
 gi|309795158|ref|ZP_07689577.1| protein RecA [Escherichia coli MS 145-7]
 gi|331643382|ref|ZP_08344513.1| protein RecA [Escherichia coli H736]
 gi|331648416|ref|ZP_08349504.1| protein RecA [Escherichia coli M605]
 gi|331654176|ref|ZP_08355176.1| protein RecA [Escherichia coli M718]
 gi|331674210|ref|ZP_08374970.1| protein RecA [Escherichia coli TA280]
 gi|331678671|ref|ZP_08379345.1| protein RecA [Escherichia coli H591]
 gi|115514054|gb|ABJ02129.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Escherichia coli APEC O1]
 gi|226839362|gb|EEH71383.1| recombinase A [Escherichia sp. 1_1_43]
 gi|226899721|gb|EEH85980.1| recombinase A [Escherichia sp. 3_2_53FAA]
 gi|227834504|gb|EEJ44970.1| recombination protein A [Escherichia coli 83972]
 gi|291322102|gb|EFE61531.1| RecA protein [Escherichia coli B088]
 gi|291432137|gb|EFF05119.1| RecA protein [Escherichia coli B185]
 gi|291468825|gb|EFF11316.1| RecA protein [Escherichia coli B354]
 gi|300298677|gb|EFJ55062.1| protein RecA [Escherichia coli MS 185-1]
 gi|300308785|gb|EFJ63305.1| protein RecA [Escherichia coli MS 200-1]
 gi|300318122|gb|EFJ67906.1| protein RecA [Escherichia coli MS 175-1]
 gi|300356521|gb|EFJ72391.1| protein RecA [Escherichia coli MS 198-1]
 gi|300395219|gb|EFJ78757.1| protein RecA [Escherichia coli MS 69-1]
 gi|300401405|gb|EFJ84943.1| protein RecA [Escherichia coli MS 84-1]
 gi|300409937|gb|EFJ93475.1| protein RecA [Escherichia coli MS 45-1]
 gi|300413646|gb|EFJ96956.1| protein RecA [Escherichia coli MS 115-1]
 gi|300419530|gb|EFK02841.1| protein RecA [Escherichia coli MS 182-1]
 gi|300453342|gb|EFK16962.1| protein RecA [Escherichia coli MS 116-1]
 gi|300454195|gb|EFK17688.1| protein RecA [Escherichia coli MS 21-1]
 gi|300461573|gb|EFK25066.1| protein RecA [Escherichia coli MS 187-1]
 gi|300526737|gb|EFK47806.1| protein RecA [Escherichia coli MS 119-7]
 gi|300531827|gb|EFK52889.1| protein RecA [Escherichia coli MS 107-1]
 gi|300839336|gb|EFK67096.1| protein RecA [Escherichia coli MS 124-1]
 gi|300847016|gb|EFK74776.1| protein RecA [Escherichia coli MS 78-1]
 gi|301076395|gb|EFK91201.1| protein RecA [Escherichia coli MS 146-1]
 gi|308121129|gb|EFO58391.1| protein RecA [Escherichia coli MS 145-7]
 gi|315254475|gb|EFU34443.1| protein RecA [Escherichia coli MS 85-1]
 gi|315289213|gb|EFU48611.1| protein RecA [Escherichia coli MS 110-3]
 gi|315293658|gb|EFU53010.1| protein RecA [Escherichia coli MS 153-1]
 gi|315298715|gb|EFU57969.1| protein RecA [Escherichia coli MS 16-3]
 gi|324013705|gb|EGB82924.1| protein RecA [Escherichia coli MS 60-1]
 gi|324017051|gb|EGB86270.1| protein RecA [Escherichia coli MS 117-3]
 gi|325496255|gb|EGC94114.1| recombinase A [Escherichia fergusonii ECD227]
 gi|331036853|gb|EGI09077.1| protein RecA [Escherichia coli H736]
 gi|331042163|gb|EGI14305.1| protein RecA [Escherichia coli M605]
 gi|331047558|gb|EGI19635.1| protein RecA [Escherichia coli M718]
 gi|331068304|gb|EGI39699.1| protein RecA [Escherichia coli TA280]
 gi|331073501|gb|EGI44822.1| protein RecA [Escherichia coli H591]
 gi|332102999|gb|EGJ06345.1| recombinase A [Shigella sp. D9]
          Length = 358

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 215/358 (60%), Positives = 285/358 (79%), Gaps = 2/358 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   K     +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG
Sbjct: 1   MTGVKMAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALG 58

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ 
Sbjct: 59  AGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDID 118

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NLL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MS
Sbjct: 119 NLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMS 178

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K
Sbjct: 179 QAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK 238

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           + +++ G++TRVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S
Sbjct: 239 EGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYS 298

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           +KG+++GQG+ N+  +L++N E A+ IE  +R+      +S       +++  A+ ++
Sbjct: 299 YKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVAETNE 356


>gi|10121164|gb|AAG13094.1|AF143779_1 RecA [Burkholderia cepacia]
          Length = 347

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 234/350 (66%), Positives = 296/350 (84%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 2   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 121 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKSDEVIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 241 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ G+VA   + + A N  +  D+++
Sbjct: 301 GKDNAREFLRENPEIAREIENRIRESLGVVA---MPDGAGNEAEAMDEEE 347


>gi|292487291|ref|YP_003530163.1| recombinase A [Erwinia amylovora CFBP1430]
 gi|292900338|ref|YP_003539707.1| RecA protein [Erwinia amylovora ATCC 49946]
 gi|291200186|emb|CBJ47314.1| RecA protein [Erwinia amylovora ATCC 49946]
 gi|291552710|emb|CBA19755.1| Recombinase A [Erwinia amylovora CFBP1430]
 gi|312171399|emb|CBX79658.1| Recombinase A [Erwinia amylovora ATCC BAA-2158]
          Length = 355

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 213/350 (60%), Positives = 275/350 (78%), Gaps = 2/350 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++T
Sbjct: 184 KNSGTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+ FGEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINIFGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
            N+  FL+EN  IA  I++ LR       D          + DA+ +  +
Sbjct: 304 ANAGNFLKENPAIANEIDAKLRAMLLGNQDDKPDFVPAAHEVDAESEANE 353


>gi|238921102|ref|YP_002934617.1| recombinase A [Edwardsiella ictaluri 93-146]
 gi|259563335|sp|C5BGH6|RECA_EDWI9 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238870671|gb|ACR70382.1| protein RecA, putative [Edwardsiella ictaluri 93-146]
          Length = 353

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 223/351 (63%), Positives = 279/351 (79%), Gaps = 2/351 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LD+ALGIGG P GRIV
Sbjct: 4   NKQRALAAALGQIEKQFGKGSIMRLGDTQTL--DIESISTGSLSLDVALGIGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA +Q  G TCAF+DAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIFGPESSGKTTLTLSVIACAQAAGKTCAFIDAEHALDPIYAAKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVD+I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 122 EQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C++VFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK+ D + GN+T
Sbjct: 182 KNANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG GIS   ELIDLGVK  ++DKSGAW+S+ G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGAGISKESELIDLGVKHKLLDKSGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
            NS  FL+EN  I+  +E  LR+     A +   E A   ++D    D +N
Sbjct: 302 ANSMKFLQENTTISAELEGKLRELLLSHAAATDAERAGAEREDNAAADDEN 352


>gi|109453422|gb|ABG34191.1| RecA [Salmonella enterica subsp. arizonae]
 gi|109453424|gb|ABG34192.1| RecA [Salmonella enterica subsp. arizonae]
 gi|109453426|gb|ABG34193.1| RecA [Salmonella enterica subsp. arizonae]
 gi|109453428|gb|ABG34194.1| RecA [Salmonella enterica subsp. arizonae]
 gi|109453430|gb|ABG34195.1| RecA [Salmonella enterica subsp. arizonae]
 gi|109453432|gb|ABG34196.1| RecA [Salmonella enterica subsp. arizonae]
 gi|109453434|gb|ABG34197.1| RecA [Salmonella enterica subsp. arizonae]
 gi|109453436|gb|ABG34198.1| RecA [Salmonella enterica subsp. arizonae]
 gi|109453438|gb|ABG34199.1| RecA [Salmonella enterica subsp. arizonae]
 gi|109453440|gb|ABG34200.1| RecA [Salmonella enterica subsp. arizonae]
          Length = 353

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 212/348 (60%), Positives = 281/348 (80%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            N+  +L+EN   A+ IE  +R+      +S       +++  A+ ++
Sbjct: 304 ANATTWLKENPATAKEIEKKVRELLLSNQNSSPDFAVDDSEGVAETNE 351


>gi|297614593|gb|ACS87947.2| RecA [Burkholderia cepacia]
          Length = 346

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 231/347 (66%), Positives = 290/347 (83%), Gaps = 1/347 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 120 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 180 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 240 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           G++N++ FLREN EIA  IE+ +R++ G+V+            D+ +
Sbjct: 300 GKDNAREFLRENPEIAREIENRIRESLGVVSMPDGVSHEAEAMDEEE 346


>gi|239840193|gb|ACS31901.1| RecA [Burkholderia pyrrocinia]
          Length = 346

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 232/350 (66%), Positives = 296/350 (84%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 120 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 180 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 240 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ G+VA   + +   N  +  D+++
Sbjct: 300 GKDNAREFLRENPEIAREIENRIRESLGVVA---MPDGVDNEAEAMDEEE 346


>gi|260767194|ref|ZP_05876136.1| RecA protein [Vibrio furnissii CIP 102972]
 gi|260617802|gb|EEX42979.1| RecA protein [Vibrio furnissii CIP 102972]
 gi|315181175|gb|ADT88089.1| recombinase A [Vibrio furnissii NCTC 11218]
          Length = 350

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 210/348 (60%), Positives = 275/348 (79%), Gaps = 3/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  I+ +Q+ G TCAF+DAEHALD +YAR+LGV +  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLELISAAQREGKTCAFIDAEHALDPVYARRLGVKIDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GELI+LGVK  +V+K+GAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIELGVKHKLVEKAGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQN-AGLVADSLLQEPAINTKDDADKD 357
            N+  +LREN E+A+ I+  LR+         + +EP   T  +  ++
Sbjct: 302 ANACKYLRENPEVAKFIDGKLREMLLSPEQVEVAEEPEFGTVPEQQEE 349


>gi|10121194|gb|AAG13109.1|AF143794_1 RecA [Burkholderia pyrrocinia]
          Length = 347

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 234/350 (66%), Positives = 296/350 (84%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 2   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 121 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 241 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ GLVA   + + A N  +  D+++
Sbjct: 301 GKDNAREFLRENPEIAREIENRIRESLGLVA---MPDGAGNEAEAMDEEE 347


>gi|109453472|gb|ABG34216.1| RecA [Salmonella enterica subsp. houtenae]
 gi|109453474|gb|ABG34217.1| RecA [Salmonella enterica subsp. houtenae]
 gi|109453488|gb|ABG34224.1| RecA [Salmonella enterica subsp. houtenae]
          Length = 353

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 211/348 (60%), Positives = 281/348 (80%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            N+  +L+EN   A+ IE  +R+      ++       +++  A+ ++
Sbjct: 304 ANATTWLKENPSTAKEIEKKVRELLLSNQNATPDFAVDDSEGVAETNE 351


>gi|301155303|emb|CBW14769.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Haemophilus parainfluenzae T3T1]
          Length = 351

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 223/347 (64%), Positives = 280/347 (80%), Gaps = 2/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E VS+GSLGLD+ALGIGG P GRIV
Sbjct: 6   EKQKALAAALGQIEKQFGKGSIMKLGDTQAL--DVESVSTGSLGLDVALGIGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IAQ+QK G TCAF+DAEHALD IYA KLGVD+K LL+SQPD G
Sbjct: 64  EIFGPESSGKTTLTLSVIAQAQKVGKTCAFIDAEHALDPIYAAKLGVDVKELLVSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVD++++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT  I
Sbjct: 124 EQALEICDALVRSGAVDVVIVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLTGQI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR GS+KD D + GN+T
Sbjct: 184 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKDGDEVIGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PF+QV+F I+YGEGIS  GELI+LGVK  +V+KSGAW+++ G+++GQG+
Sbjct: 244 RVKVVKNKLAAPFRQVDFQILYGEGISKAGELIELGVKHKLVEKSGAWYAYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
            N+  +L EN   ++ +E+ LR       +  L      + DDA+ D
Sbjct: 304 ANAMKWLHENPAKSDELEAKLRAELVANPEQALMADIEQSNDDAESD 350


>gi|109453402|gb|ABG34181.1| RecA [Salmonella enterica subsp. salamae]
 gi|109453404|gb|ABG34182.1| RecA [Salmonella enterica subsp. salamae]
 gi|109453406|gb|ABG34183.1| RecA [Salmonella enterica subsp. salamae]
 gi|109453408|gb|ABG34184.1| RecA [Salmonella enterica subsp. salamae]
 gi|109453410|gb|ABG34185.1| RecA [Salmonella enterica subsp. salamae]
 gi|109453412|gb|ABG34186.1| RecA [Salmonella enterica subsp. salamae]
 gi|109453414|gb|ABG34187.1| RecA [Salmonella enterica subsp. salamae]
 gi|109453416|gb|ABG34188.1| RecA [Salmonella enterica subsp. salamae]
 gi|109453418|gb|ABG34189.1| RecA [Salmonella enterica subsp. salamae]
 gi|109453420|gb|ABG34190.1| RecA [Salmonella enterica subsp. salamae]
 gi|109453442|gb|ABG34201.1| RecA [Salmonella enterica subsp. diarizonae]
 gi|109453444|gb|ABG34202.1| RecA [Salmonella enterica subsp. diarizonae]
 gi|109453446|gb|ABG34203.1| RecA [Salmonella enterica subsp. diarizonae]
 gi|109453448|gb|ABG34204.1| RecA [Salmonella enterica subsp. diarizonae]
 gi|109453450|gb|ABG34205.1| RecA [Salmonella enterica subsp. diarizonae]
 gi|109453456|gb|ABG34208.1| RecA [Salmonella enterica subsp. diarizonae]
 gi|109453458|gb|ABG34209.1| RecA [Salmonella enterica subsp. diarizonae]
 gi|109453460|gb|ABG34210.1| RecA [Salmonella enterica subsp. diarizonae]
 gi|109453462|gb|ABG34211.1| RecA [Salmonella enterica subsp. diarizonae]
          Length = 353

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 211/348 (60%), Positives = 281/348 (80%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            N+  +L+EN   A+ IE  +R+      ++       +++  A+ ++
Sbjct: 304 ANATTWLKENPATAKEIEKKVRELLLSNQNATPDFSVDDSEGVAETNE 351


>gi|47571256|gb|AAT35785.1| RecA [Mycobacterium avium subsp. avium ATCC 25291]
 gi|47571258|gb|AAT35786.1| RecA [Mycobacterium avium]
          Length = 321

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 202/322 (62%), Positives = 264/322 (81%), Gaps = 2/322 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 2   PDREKALELAMAQIEKSYGKGSVMRLGDE--MRQPISVIPTGSIALDVALGIGGLPRGRV 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 60  VEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T +
Sbjct: 120 GEQALEIADMLIRSGALDILVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGA 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+
Sbjct: 180 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNR 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVK+VKNK++ PFKQ EFDI+YG GIS  G LID+GV    + KSG+WF+++G++LGQG
Sbjct: 240 TRVKIVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGSWFTYEGEQLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLL 331
           +EN++ FL EN E+A  IE  +
Sbjct: 300 KENARTFLMENDEVANEIEKKI 321


>gi|254575556|gb|ACT68292.1| RecA [Burkholderia cepacia]
 gi|254575558|gb|ACT68293.1| RecA [Burkholderia cepacia]
          Length = 346

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 231/350 (66%), Positives = 295/350 (84%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 120 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 180 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 240 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ G+ A   + +  +N  +  D+++
Sbjct: 300 GKDNAREFLRENPEIAREIENRIRESLGVAA---MPDGVVNEAEAMDEEE 346


>gi|88813101|ref|ZP_01128342.1| recA protein [Nitrococcus mobilis Nb-231]
 gi|88789585|gb|EAR20711.1| recA protein [Nitrococcus mobilis Nb-231]
          Length = 351

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 233/346 (67%), Positives = 284/346 (82%), Gaps = 9/346 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL  AL QI++ +GKG +M++G   ++   + V+S+GSL LDIALGIGG P+GR+V
Sbjct: 6   NRKKALNLALGQIEKQFGKGTVMRMGDMQAVR-DVPVISTGSLSLDIALGIGGLPRGRVV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L TIA++QK GG  AFVDAEHALD  YA+KLGVD+  LL+SQPDTG
Sbjct: 65  EIYGPESSGKTTLTLQTIAEAQKAGGIAAFVDAEHALDPDYAQKLGVDINELLLSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSGAVDIIV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 125 EQALEITDMLVRSGAVDIIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK  D I GNQT
Sbjct: 185 KRSHSLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKKGDEIIGNQT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFKQ EF+I+YGEGIS  GELI+LGV+  IV+K+GAW+S+ G+R+GQG+
Sbjct: 245 RVKVVKNKMAPPFKQAEFEILYGEGISRQGELIELGVREGIVEKAGAWYSYAGERIGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQ--------NAGLVADSLLQEPAI 348
           +N + FL+   E+A  IES LR+        +AG VADS    PA 
Sbjct: 305 DNVRSFLKAQPEVAVQIESRLREQLFSKPASSAGEVADSARTPPAE 350


>gi|161502126|ref|YP_001569238.1| recombinase A [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160863473|gb|ABX20096.1| hypothetical protein SARI_00143 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 358

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 212/348 (60%), Positives = 281/348 (80%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 11  NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 68

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 69  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 128

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 129 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 188

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 189 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 248

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 249 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 308

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            N+  +L+EN   A+ IE  +R+      +S       +++  A+ ++
Sbjct: 309 ANATTWLKENPATAKEIEKKVRELLLSNQNSSPDFAVDDSEGVAETNE 356


>gi|114775363|ref|ZP_01450931.1| recombinase A [Mariprofundus ferrooxydans PV-1]
 gi|114553474|gb|EAU55855.1| recombinase A [Mariprofundus ferrooxydans PV-1]
          Length = 336

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 217/333 (65%), Positives = 276/333 (82%), Gaps = 2/333 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + DKSKAL+ ALSQI+R +GKG +M+LG    +   + VV SGSL LD ALG+GG+P+GR
Sbjct: 1   MSDKSKALDTALSQIERQFGKGTVMRLGDHAKV--PVSVVPSGSLALDAALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EIYGPESSGKTT+ALH IA++QK GG  AFVDAEHALD  YA +LGVD+ NLL+SQPD
Sbjct: 59  VIEIYGPESSGKTTMALHAIAEAQKLGGQAAFVDAEHALDPSYAERLGVDVDNLLVSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           +GEQALEI DML RSG VDIIV+DSVAALTP+AE+EGDMG+S  G+QARLMSQALRKLT 
Sbjct: 119 SGEQALEIVDMLTRSGGVDIIVVDSVAALTPKAELEGDMGDSHMGLQARLMSQALRKLTG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           SI+RS  I++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD+RR+G+IK  D + GN
Sbjct: 179 SIARSNTIIIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDVRRIGAIKKGDEVMGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
            TRVKVVKNK+A PFKQ +F IMYGEG+S  GE++D+GV+  +V+KSGAW++   +R+GQ
Sbjct: 239 DTRVKVVKNKVAPPFKQAQFSIMYGEGVSHAGEVLDMGVQYGLVNKSGAWYACGNERIGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           GR+N+  +L+E+ E+   IE+ +R+  GL+ + 
Sbjct: 299 GRDNAMTYLKEHPEMLAEIETGVREALGLIKNG 331


>gi|197124458|ref|YP_002136409.1| recA protein [Anaeromyxobacter sp. K]
 gi|196174307|gb|ACG75280.1| recA protein [Anaeromyxobacter sp. K]
          Length = 358

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 220/351 (62%), Positives = 285/351 (81%), Gaps = 6/351 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KA+E A++ I++ +GKG+IM+LG++ ++ + ++ VS+G++ LDIALG+GGFP+GRI
Sbjct: 5   PEKEKAIELAVASIEKAFGKGSIMRLGNEDALVKDVQAVSTGAVSLDIALGVGGFPRGRI 64

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALH IA++Q+ GG  AFVDAEHALD  YARKLGV   +LLISQPD+
Sbjct: 65  IEIYGPESSGKTTLALHAIAEAQRRGGIAAFVDAEHALDVGYARKLGVRTDDLLISQPDS 124

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + LVRSGA+D++V+DSVAAL P+AE+EG+MG++  G+QARLMSQALRKLT +
Sbjct: 125 GEQALEIVETLVRSGAIDVLVVDSVAALVPKAELEGEMGDAHMGVQARLMSQALRKLTGT 184

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S  I++FINQ+RMKIGVMFG+PETTTGGNALKFY+S RLDIRR+G+IKD DS+ GN+
Sbjct: 185 ISKSATIVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIGAIKDGDSVIGNR 244

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFK+VEFDIMYG+GIS  G+++DL    +IV+KSG WFSF G+R+GQG
Sbjct: 245 TRVKVVKNKVAPPFKEVEFDIMYGQGISREGDVLDLASNENIVEKSGTWFSFGGERIGQG 304

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL------VADSLLQEPAINTKDDA 354
           RE +K F RE+ EI + IES L +  G+      V     +EP    K  A
Sbjct: 305 REQAKAFFREHPEILQQIESRLFEKFGIHRGPVAVPSPPAEEPVEERKPRA 355


>gi|464597|sp|Q05358|RECA_LEGPN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|48780|emb|CAA39097.1| recA [Legionella pneumophila]
 gi|227652|prf||1708209A recA gene
          Length = 348

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 220/346 (63%), Positives = 282/346 (81%), Gaps = 1/346 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AA+SQI+R +GKG++M++G   ++   IE +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKQKALSAAVSQIERQFGKGSVMRMGD-STVSRDIEAISTGSLGLDIALGIGGLPKGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA+KLGV +  LL+SQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAECQKMGGTAAFIDAEHALDPSYAQKLGVKVDELLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+++IDSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 123 EQALEITDMLVRSAAVDVVIIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  + I G++T
Sbjct: 183 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGEEILGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK  EFDI+Y EGIS   E+I+LGV+ ++++KSGAW+S+K +++GQG+
Sbjct: 243 RVKVVKNKVAPPFKMTEFDILYNEGISRESEIINLGVQLNLIEKSGAWYSYKQEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           EN +++L+EN ++A  +E  +R        S+L   + +  +  D 
Sbjct: 303 ENVRLYLKENPQVAAELEQQIRTELLEKKLSVLASSSEDLFETIDD 348


>gi|323492973|ref|ZP_08098111.1| recombinase A [Vibrio brasiliensis LMG 20546]
 gi|323312804|gb|EGA65930.1| recombinase A [Vibrio brasiliensis LMG 20546]
          Length = 347

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 215/353 (60%), Positives = 277/353 (78%), Gaps = 10/353 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ E  I+YG G +  GELIDLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKQAETQILYGAGFNREGELIDLGVKHKLIEKAGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N+  FLR+N + A+ I+S LR+        +L  PA    +DA+       E
Sbjct: 302 ANAGKFLRDNPDAAKAIDSKLRE--------MLLSPAEVQPEDAELGQMPEEE 346


>gi|116119174|gb|ABJ74757.1| RecA [Burkholderia sp. R430]
          Length = 347

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 231/331 (69%), Positives = 287/331 (86%), Gaps = 1/331 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 2   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 121 TGEQALEITDALVRSGSIDTIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 241 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           G++N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 301 GKDNAREFLRENPEIAREIENRIRESLGVVA 331


>gi|255767389|ref|NP_389576.2| recombinase A [Bacillus subtilis subsp. subtilis str. 168]
 gi|321315459|ref|YP_004207746.1| recombinase A [Bacillus subtilis BSn5]
 gi|251757322|sp|P16971|RECA_BACSU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|225185016|emb|CAB13567.2| multifunctional SOS repair factor [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291484248|dbj|BAI85323.1| multifunctional SOS repair regulator [Bacillus subtilis subsp.
           natto BEST195]
 gi|320021733|gb|ADV96719.1| recombinase A [Bacillus subtilis BSn5]
          Length = 348

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 206/335 (61%), Positives = 270/335 (80%), Gaps = 2/335 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG +      I  V SGSL LD ALGIGG+P+GR
Sbjct: 1   MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTR--ISTVPSGSLALDTALGIGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT+ALH IA+ Q+ GG  AF+DAEHALD +YA+KLGV+++ LL+SQPD
Sbjct: 59  IIEVYGPESSGKTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDI+V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K  + + GN
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK+A PF+  E DIMYGEGIS  GE+IDLG +  IV KSG+W+S++ +RLGQ
Sbjct: 239 KTKIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343
           GREN+K FL+EN +I   I+  +R++ GL  + ++
Sbjct: 299 GRENAKQFLKENKDIMLMIQEQIREHYGLDNNGVV 333


>gi|237809470|ref|YP_002893910.1| recombinase A [Tolumonas auensis DSM 9187]
 gi|259563347|sp|C4LBQ0|RECA_TOLAT RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|237501731|gb|ACQ94324.1| recA protein [Tolumonas auensis DSM 9187]
          Length = 360

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 225/350 (64%), Positives = 275/350 (78%), Gaps = 4/350 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL AAL QI++ +GKG+IM+LG   S+   I+ + +GSL LDIALGIGG P GRI
Sbjct: 3   SNKEKALAAALGQIEKQFGKGSIMRLGDTQSL--DIDSIPTGSLSLDIALGIGGLPMGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEI+GPESSGKTTL L  IAQ+QK G TCAF+DAEHALD IYA KLGV + +LL+SQPDT
Sbjct: 61  VEIFGPESSGKTTLTLEVIAQAQKAGKTCAFIDAEHALDPIYAGKLGVKVDDLLVSQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGAVD+I+IDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT +
Sbjct: 121 GEQALEICDMLVRSGAVDVIIIDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTGN 180

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I  + C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD + I GN+
Sbjct: 181 IKNANCLCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEIVGNE 240

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQ +F I+YGEGIS   ELIDLGVK  ++DKSGAW+++KG ++GQG
Sbjct: 241 TRVKVVKNKVAPPFKQADFQILYGEGISKESELIDLGVKCKLIDKSGAWYAYKGDKIGQG 300

Query: 310 RENSKIFLRENIEIAENIESLLRQNA--GLVADSLLQEPAINTKDDADKD 357
           + N+  +L+EN   AE IE  LR+          +   P +     +D +
Sbjct: 301 KANAMKYLKENTAAAEEIELKLRELLLSHNPPTEIAVAPVVEEFTPSDDE 350


>gi|225351347|ref|ZP_03742370.1| hypothetical protein BIFPSEUDO_02941 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157691|gb|EEG70974.1| hypothetical protein BIFPSEUDO_02941 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 394

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 209/360 (58%), Positives = 278/360 (77%), Gaps = 10/360 (2%)

Query: 4   RKEMNIVD--KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
            K  N +D  +  AL+ AL+Q+++ +GKG+ M+LG +    + +EV+ +GSL LD+ALGI
Sbjct: 13  NKSANGIDPRRQAALDTALAQVEKSFGKGSAMRLGDRPE--QDVEVIPTGSLALDMALGI 70

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG PKGRIVEIYGPESSGKTTLALH +A +QK GG  AF+DAEHALD +YARKLGVD  +
Sbjct: 71  GGLPKGRIVEIYGPESSGKTTLALHVVANAQKNGGVAAFIDAEHALDPVYARKLGVDTDS 130

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQ
Sbjct: 131 LIVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQ 190

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRK+T +++++    +FINQ+R KIGV FG+PETTTGG ALKFYSSVR+DIRR+ +IK+
Sbjct: 191 ALRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYSSVRMDIRRIQTIKN 250

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            D   GN+T+VKVVKNKMA PFK  EFD++YGEGIS  G ++D+ ++ ++V KSG+WF++
Sbjct: 251 GDEAVGNRTKVKVVKNKMAPPFKTAEFDVLYGEGISKEGSVLDMALQVNVVKKSGSWFTY 310

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
            G +LGQGREN + FL++N E+ E IE+ ++   GL+      EP     +D ++    N
Sbjct: 311 GGDQLGQGRENVRQFLKDNPELTEEIENKVKAEFGLI------EPTDQFAEDGNEASASN 364


>gi|197303184|ref|ZP_03168226.1| hypothetical protein RUMLAC_01907 [Ruminococcus lactaris ATCC
           29176]
 gi|197297724|gb|EDY32282.1| hypothetical protein RUMLAC_01907 [Ruminococcus lactaris ATCC
           29176]
          Length = 373

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 202/363 (55%), Positives = 275/363 (75%), Gaps = 5/363 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K  N  +K KAL+AA++++++ +GKGA+M+LG  G+    +E V +G L LD+ALG+GG 
Sbjct: 10  KVTNSEEKKKALDAAIAKLEKDFGKGAVMKLGESGA-HVSVETVPTGCLSLDLALGLGGV 68

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGR++E+YGPESSGKTT+ALH I++ QK GG   F+DAEHALD +YA+ +GVD+  L I
Sbjct: 69  PKGRVIEVYGPESSGKTTVALHMISEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDELYI 128

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD+G+QALEI + +VRSGA+DIIVIDSVAAL P+ EIEGDMG+S  G+QARLMSQALR
Sbjct: 129 SQPDSGDQALEIAETMVRSGAIDIIVIDSVAALVPKQEIEGDMGDSHVGLQARLMSQALR 188

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT  IS+S C+++FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+D+RR+ ++K    
Sbjct: 189 KLTPVISKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASVRMDVRRIETLKQNGE 248

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           I GN+TR+K+VKNK+A PFK+ EFDIM+G+GIS  G+++DL  K  IV KSGAW++++G 
Sbjct: 249 IVGNRTRIKIVKNKIAPPFKEAEFDIMFGKGISREGDILDLASKIDIVKKSGAWYAYEGD 308

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN----TKDDADKDDTD 360
           ++GQGREN+K +L  + E+ E IE  +R    L       E   +     +   DK+ TD
Sbjct: 309 KIGQGRENAKSYLESHPEVMEEIERKVRAYYHLDGTEPEDEKKSDLKLTAEKKTDKEKTD 368

Query: 361 NVE 363
             +
Sbjct: 369 AEQ 371


>gi|47571274|gb|AAT35794.1| RecA [Mycobacterium marinum]
 gi|47571276|gb|AAT35795.1| RecA [Mycobacterium marinum]
          Length = 324

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 201/322 (62%), Positives = 264/322 (81%), Gaps = 2/322 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI++ YGKG++M+LG +  + + I ++ +GS+ LD+ALGIGG P+GR+
Sbjct: 5   PDREKALELAMAQIEKSYGKGSVMRLGDE--VRQPISIIPTGSIALDVALGIGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 63  IEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T +
Sbjct: 123 GEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+
Sbjct: 183 LNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVK+VKNK++ PFKQ EFDI+YG GIS  G LID+GV    + KSGAWF+++G++LGQG
Sbjct: 243 TRVKIVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGAWFTYEGEQLGQG 302

Query: 310 RENSKIFLRENIEIAENIESLL 331
           +EN++ FL EN E+A  IE  +
Sbjct: 303 KENARNFLLENGEVANEIEKKI 324


>gi|261210114|ref|ZP_05924412.1| RecA protein [Vibrio sp. RC341]
 gi|262401752|ref|ZP_06078318.1| RecA protein [Vibrio sp. RC586]
 gi|260840879|gb|EEX67421.1| RecA protein [Vibrio sp. RC341]
 gi|262352169|gb|EEZ01299.1| RecA protein [Vibrio sp. RC586]
          Length = 354

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 209/345 (60%), Positives = 274/345 (79%), Gaps = 2/345 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTG
Sbjct: 62  EIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            N+  +L+EN EIA+ ++  LR+      +  L     +  DD +
Sbjct: 302 ANACKYLKENTEIAKTLDKKLREMLLNPENMQLTGETASAADDVE 346


>gi|242133670|gb|ACS87946.1| RecA [Burkholderia cepacia]
          Length = 345

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 234/349 (67%), Positives = 295/349 (84%), Gaps = 4/349 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 120 TGEQALEITDALVRSGSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 180 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 240 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           G++N++ FLREN EIA  IE+ +R++ G+VA   + + A N  +  D++
Sbjct: 300 GKDNAREFLRENPEIAREIENRIRESLGVVA---MPDGASNEAEAMDEE 345


>gi|34497062|ref|NP_901277.1| recombinase A [Chromobacterium violaceum ATCC 12472]
 gi|60393012|sp|Q7NXL9|RECA_CHRVO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|34102919|gb|AAQ59283.1| RecA protein [Chromobacterium violaceum ATCC 12472]
          Length = 350

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 215/348 (61%), Positives = 283/348 (81%), Gaps = 1/348 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   DKSKAL AAL+QI++ +GKG+IM++     I E ++V+S+GSL LD+ALG+GG P+
Sbjct: 1   MASEDKSKALAAALAQIEKQFGKGSIMRMSDNQ-ITENLQVISTGSLTLDLALGVGGLPR 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTTL L  +A++QK GGTCA++DAE+ALD +YA+KLGV++++LLISQ
Sbjct: 60  GRVVEIYGPESSGKTTLCLQAVAEAQKLGGTCAYIDAENALDPVYAQKLGVNVEDLLISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI DMLVRS  VD+IV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL
Sbjct: 120 PDTGEQALEICDMLVRSSGVDVIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T +I R+  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G IK  D + 
Sbjct: 180 TGNIKRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGGIKKGDEVI 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN TRVKVVKNK++ PF+Q +F+I+YGEGIS  GE+I+LGVK   +DKSGAW+++ GQ++
Sbjct: 240 GNDTRVKVVKNKVSPPFRQADFEILYGEGISRQGEIIELGVKHGFIDKSGAWYAYNGQKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           GQG++N++ +L+ N  IA+ IE  +R+  G+  +    +      DDA
Sbjct: 300 GQGKDNTREWLKANPAIADEIERKIREAVGVKIEINENQGDEEFADDA 347


>gi|254507386|ref|ZP_05119521.1| protein RecA [Vibrio parahaemolyticus 16]
 gi|219549642|gb|EED26632.1| protein RecA [Vibrio parahaemolyticus 16]
          Length = 363

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 219/363 (60%), Positives = 283/363 (77%), Gaps = 10/363 (2%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   +++   +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG
Sbjct: 9   MSLLEKVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALG 66

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG P GRIVEIYGPESSGKTTL L  IA +QK G TCAF+DAEHALD +YA+KLGVD+ 
Sbjct: 67  AGGLPMGRIVEIYGPESSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDID 126

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++S
Sbjct: 127 ALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLS 186

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK
Sbjct: 187 QAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIK 246

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           + D + GN+TR+KVVKNK+A+PFKQ E  IMYG+G +  GELIDLGVK  +++K+GAW+S
Sbjct: 247 EGDEVVGNETRIKVVKNKIAAPFKQAETQIMYGQGFNREGELIDLGVKHKLIEKAGAWYS 306

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           + G ++GQG+ N+  FLREN+E A+ I++ LR+        +L  PA    DDA+     
Sbjct: 307 YNGDKIGQGKANAGKFLRENVEAAQAIDAKLRE--------MLLSPAEIQPDDAELGQMP 358

Query: 361 NVE 363
             E
Sbjct: 359 EQE 361


>gi|220919188|ref|YP_002494492.1| recA protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957042|gb|ACL67426.1| recA protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 358

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 219/351 (62%), Positives = 285/351 (81%), Gaps = 6/351 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KA+E A++ I++ +GKG+IM+LG++ ++ + ++ VS+G++ LDIALG+GGFP+GRI
Sbjct: 5   PEKEKAIELAVASIEKAFGKGSIMRLGNEDALVKDVQAVSTGAVSLDIALGVGGFPRGRI 64

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALH IA++Q+ GG  AFVDAEHALD  YARKLGV   +LLISQPD+
Sbjct: 65  IEIYGPESSGKTTLALHAIAEAQRRGGIAAFVDAEHALDVGYARKLGVRTDDLLISQPDS 124

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + LVRSGA+D++V+DSVAAL P+AE+EG+MG++  G+QARLMSQALRKLT +
Sbjct: 125 GEQALEIVETLVRSGAIDVLVVDSVAALVPKAELEGEMGDAHMGVQARLMSQALRKLTGT 184

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I++S  I++FINQ+RMKIGVMFG+PETTTGGNALKFY+S RLDIRR+G+IKD DS+ GN+
Sbjct: 185 IAKSATIVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIGAIKDGDSVIGNR 244

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFK+VEFDIMYG+GIS  G+++DL    +IV+KSG WFSF G+R+GQG
Sbjct: 245 TRVKVVKNKVAPPFKEVEFDIMYGQGISREGDVLDLASNENIVEKSGTWFSFGGERIGQG 304

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL------VADSLLQEPAINTKDDA 354
           RE +K F RE+ EI + IES L +  G+      V     +EP    K  A
Sbjct: 305 REQAKAFFREHPEILQQIESRLFEKFGIHRGPVAVPSPPAEEPVEERKPRA 355


>gi|291519143|emb|CBK74364.1| protein RecA [Butyrivibrio fibrisolvens 16/4]
          Length = 350

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 194/329 (58%), Positives = 267/329 (81%), Gaps = 2/329 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   DK +AL+AA+SQI++ YGKG++M+LG   +I   +E V +GS+ LD+ALG GGFPK
Sbjct: 1   MANEDKLRALDAAISQIEKQYGKGSVMKLGEGANI--QVETVPTGSISLDLALGQGGFPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTTLALH +A+ QK GG   F+DAEHALD  YA+ +GV++ +L ISQ
Sbjct: 59  GRIIEIYGPESSGKTTLALHAVAEVQKAGGIAGFIDAEHALDPKYAKAIGVNIDDLYISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT+ +VRSGA+DIIV+DSVAAL P+AEI+GDMG+S  G+ ARLMSQA+RKL
Sbjct: 119 PDNGEQALEITETMVRSGAMDIIVVDSVAALVPKAEIDGDMGDSHVGLHARLMSQAMRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T  ++++ C+++FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+D+RR+ ++K    + 
Sbjct: 179 TGIVAKTNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASVRIDVRRIEALKQNGEVI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR K+VKNK+A PF++ EFDIM+GEGIS  G+++D+     IV KSGAW+++ G+++
Sbjct: 239 GNRTRAKIVKNKVAPPFREAEFDIMFGEGISREGDILDVATNLDIVQKSGAWYAYLGEKI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNA 335
           GQGREN+K++L++N E+ E I + +R + 
Sbjct: 299 GQGRENAKMYLKQNPEVCEEIAAAIRDHY 327


>gi|13021984|gb|AAK11600.1| RecA [Burkholderia ambifaria]
          Length = 350

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 229/331 (69%), Positives = 287/331 (86%), Gaps = 1/331 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 2   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 121 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 241 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           G++N++ FLREN EIA  IE+ +R++ G+V 
Sbjct: 301 GKDNAREFLRENPEIAREIENRIRESLGVVT 331


>gi|253999897|ref|YP_003051960.1| recombinase A [Methylovorus sp. SIP3-4]
 gi|253986576|gb|ACT51433.1| recA protein [Methylovorus sp. SIP3-4]
          Length = 344

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 223/342 (65%), Positives = 288/342 (84%), Gaps = 1/342 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AALSQI++ +GKG+IM++G    +   I+ VS+GSLGLDIALGIGG P+GRI+
Sbjct: 4   NKSKALAAALSQIEKQFGKGSIMRMGD-TDVAADIQAVSTGSLGLDIALGIGGLPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK GGT AF+DAEHALD  YA+KLGV++ +LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLSVIAQMQKMGGTAAFIDAEHALDPQYAQKLGVNVSDLLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VDI+V+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 123 EQALEIADMLVRSGSVDIVVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK  D + G++T
Sbjct: 183 KRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKKGDEVIGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDI+YGEGIS  GE+I++GV   +V+KSGAW+S+KG+++GQG+
Sbjct: 243 RVKVVKNKVAPPFKQAEFDILYGEGISREGEIIEMGVNLKLVEKSGAWYSYKGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           +N++ +LRE+ +IA  I++ +R N+ L   ++   P  + ++
Sbjct: 303 DNAREYLREHADIASEIDAKIRANSNLAGAAMTVAPDDDGEE 344


>gi|295396971|ref|ZP_06807092.1| recombination protein A [Aerococcus viridans ATCC 11563]
 gi|294974788|gb|EFG50494.1| recombination protein A [Aerococcus viridans ATCC 11563]
          Length = 363

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 207/358 (57%), Positives = 275/358 (76%), Gaps = 2/358 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           + N  ++ KAL+ A+ +I+R +GKG+IM++G +G     I  V +GSL LDI+LG+GG+P
Sbjct: 4   DKNDSNRQKALDDAMKKIERNFGKGSIMKMGERGDTR--ISTVPTGSLTLDISLGVGGYP 61

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+E+YGPESSGKTT++LH IA+ QK GG  AF+DAE+ALD  YA KLGV++  LL+S
Sbjct: 62  RGRIIEVYGPESSGKTTVSLHAIAEVQKRGGIAAFIDAENALDPEYAAKLGVNVDELLLS 121

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQ LEI D LV SGA+DIIV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRK
Sbjct: 122 QPDTGEQGLEIADALVSSGAIDIIVVDSVAALVPRAEIEGEMGDSHIGLQARLMSQALRK 181

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           L+ +I+++K I +FINQ+R K+GVMFGSPETT GG ALKFYS+VRL++RR   IK+  S 
Sbjct: 182 LSGTINKTKTIAIFINQIREKVGVMFGSPETTPGGRALKFYSTVRLEVRRGEQIKESGSA 241

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+T++K+VKNK+A PFK  E DIMYGEGIS  GEL+DL  +  I++KSG+W+S+   R
Sbjct: 242 IGNRTKIKIVKNKVAPPFKVAEVDIMYGEGISQEGELVDLAAELDIINKSGSWYSYGEDR 301

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           +GQGREN+K FLREN EI E I+  +RQ+ G   +  L E  ++  +  D+   + +E
Sbjct: 302 IGQGRENAKQFLRENPEIRETIDGQVRQHFGFGQNGKLSEEELDALEANDQAQVELLE 359


>gi|270284057|ref|ZP_05965477.2| protein RecA [Bifidobacterium gallicum DSM 20093]
 gi|270278014|gb|EFA23868.1| protein RecA [Bifidobacterium gallicum DSM 20093]
          Length = 388

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 205/350 (58%), Positives = 269/350 (76%), Gaps = 8/350 (2%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
             + +AL+ AL Q+++ +GKG+ M+LG +    + +EV+ +GSL LD+ALGIGG P+GRI
Sbjct: 36  PKRQEALDTALKQVEKSFGKGSAMRLGDRPE--QDVEVIPTGSLALDMALGIGGLPRGRI 93

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH +A +Q+ GG  AF+DAEHALD +YARKLGVD  +L++SQPD 
Sbjct: 94  VEIYGPESSGKTTLALHVVANAQRNGGVAAFIDAEHALDPVYARKLGVDTDSLIVSQPDN 153

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+D+IV+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRK+T +
Sbjct: 154 GEQALEIADMLIRSGALDVIVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKMTGA 213

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++++    +FINQ+R KIGV FGSPETTTGG ALKFYSSVRLDIRR+ +IK  D   GN+
Sbjct: 214 LAQAGTTAIFINQLREKIGVFFGSPETTTGGKALKFYSSVRLDIRRIQTIKAGDEAVGNR 273

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFK  EFD++YGEGIS  G ++D+ ++  +V KSG+WF++ G +LGQG
Sbjct: 274 TRVKVVKNKMAPPFKSAEFDVLYGEGISREGSILDMALQTDVVKKSGSWFTYNGDQLGQG 333

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           REN + +L++  E+A  IE  ++   GL+      EP     + A+ D  
Sbjct: 334 RENVRKYLKDTPELARQIEDQVKVAFGLL------EPEEQFVEGAEGDAE 377


>gi|254575562|gb|ACT68295.1| RecA [Burkholderia cepacia]
          Length = 347

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 229/331 (69%), Positives = 287/331 (86%), Gaps = 1/331 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 120 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNAL+FYSSVRLDIRR+GSIK  D + GN
Sbjct: 180 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALRFYSSVRLDIRRIGSIKKNDEVIGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 240 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           G++N++ FLREN EIA  IE+ +R++ G+ A
Sbjct: 300 GKDNAREFLRENPEIAREIENRIRESLGVAA 330


>gi|86278347|gb|ABC88427.1| RecA [Burkholderia pyrrocinia]
 gi|116119162|gb|ABJ74751.1| RecA [Burkholderia sp. M301]
          Length = 347

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 232/350 (66%), Positives = 296/350 (84%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 2   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 121 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 241 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ G+VA   + +   N  +  D+++
Sbjct: 301 GKDNAREFLRENPEIAREIENRIRESLGVVA---MPDGVDNEAEAMDEEE 347


>gi|13021987|gb|AAK11601.1|AF323971_1 RecA [Burkholderia dolosa]
          Length = 347

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 231/347 (66%), Positives = 290/347 (83%), Gaps = 1/347 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 2   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 121 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 241 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           G++N++ FLREN EIA  IE+ +R++ G+ A            D+ +
Sbjct: 301 GKDNAREFLRENPEIAREIENRIRESLGVAAMPDGAGHEAEAMDEEE 347


>gi|261820429|ref|YP_003258535.1| recombinase A [Pectobacterium wasabiae WPP163]
 gi|261604442|gb|ACX86928.1| recA protein [Pectobacterium wasabiae WPP163]
          Length = 357

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 214/353 (60%), Positives = 276/353 (78%), Gaps = 2/353 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD + + G++T
Sbjct: 184 KQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N+  FL+EN  IA  ++  LR+      + L      N+ D+ +     N E
Sbjct: 304 ANACNFLKENSAIAAELDKKLREMLLHKGNELTPAAVGNSHDEDEFAGEGNEE 356


>gi|47571270|gb|AAT35792.1| RecA [Mycobacterium gordonae]
          Length = 324

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 202/322 (62%), Positives = 263/322 (81%), Gaps = 2/322 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 5   PDREKALELAMAQIEKSYGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 63  IEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DI+VIDSV AL PRAE+EG+MG+S  G+QARLMSQALRK+T +
Sbjct: 123 GEQALEIADMLIRSGALDIVVIDSVTALVPRAELEGEMGDSHVGLQARLMSQALRKMTGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD  +  GN+
Sbjct: 183 LNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTNAVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV    + KSGAWF+++G++LGQG
Sbjct: 243 TRVKVVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVDQGFIRKSGAWFTYEGEQLGQG 302

Query: 310 RENSKIFLRENIEIAENIESLL 331
           +EN++ FL EN +I   IE  +
Sbjct: 303 KENARNFLLENGDIGNEIEKKI 324


>gi|189426210|ref|YP_001953387.1| recombinase A [Geobacter lovleyi SZ]
 gi|189422469|gb|ACD96867.1| recA protein [Geobacter lovleyi SZ]
          Length = 336

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 213/337 (63%), Positives = 275/337 (81%), Gaps = 1/337 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + DK+KA+E ALSQI++ +GKGAIM+LG    +  G+E +S+G++ LD+ALG+GG P+GR
Sbjct: 1   MSDKNKAIELALSQIEKQFGKGAIMRLG-NDEVLPGVESISTGAISLDLALGVGGVPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++E+YGPESSGKTTLALH +A++QK+GG  AFVDAEHALD  YARKLGV   +LL+SQPD
Sbjct: 60  VIEVYGPESSGKTTLALHIVAEAQKSGGIAAFVDAEHALDINYARKLGVKTDDLLVSQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGA+D++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT 
Sbjct: 120 TGEQALEIAETLVRSGAIDVLVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            IS+S C ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIR++ ++K  D + G+
Sbjct: 180 IISKSNCCVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRKIATLKQGDQVIGS 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFK+ EFDI+YGEGIS  G+++DL V  +I+DKSGAWFS+  +R+GQ
Sbjct: 240 RTRVKVVKNKVAPPFKEAEFDILYGEGISRTGDVLDLAVDRNIIDKSGAWFSYNKERIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           GRENS+ FL+EN  +   IE+ L +           E
Sbjct: 300 GRENSRQFLKENPVMLAEIEARLMELIKPAPKEEKAE 336


>gi|324005759|gb|EGB74978.1| protein RecA [Escherichia coli MS 57-2]
          Length = 358

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 214/358 (59%), Positives = 284/358 (79%), Gaps = 2/358 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   K     +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG
Sbjct: 1   MTGVKMAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALG 58

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ 
Sbjct: 59  AGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDID 118

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NLL SQPD GEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MS
Sbjct: 119 NLLCSQPDPGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMS 178

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K
Sbjct: 179 QAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK 238

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           + +++ G++TRVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S
Sbjct: 239 EGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYS 298

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           +KG+++GQG+ N+  +L++N E A+ IE  +R+      +S       +++  A+ ++
Sbjct: 299 YKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVAETNE 356


>gi|269965242|ref|ZP_06179376.1| recA protein [Vibrio alginolyticus 40B]
 gi|269830228|gb|EEZ84455.1| recA protein [Vibrio alginolyticus 40B]
          Length = 354

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 206/333 (61%), Positives = 274/333 (82%), Gaps = 2/333 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M+  +++   +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG
Sbjct: 1   MNKSEKVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALG 58

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ 
Sbjct: 59  AGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDID 118

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++S
Sbjct: 119 ALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLS 178

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK
Sbjct: 179 QAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIK 238

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           + D + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GEL+DLGVK  +V+K+GAW+S
Sbjct: 239 EGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKAGAWYS 298

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           + G ++GQG+ N+  +LRE+ E+A+ I++ LR+
Sbjct: 299 YNGDKIGQGKANACNYLREHPEVAKTIDTKLRE 331


>gi|163856367|ref|YP_001630665.1| recombinase A [Bordetella petrii DSM 12804]
 gi|229470327|sp|A9IKD2|RECA_BORPD RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|163260095|emb|CAP42396.1| RecA protein [Bordetella petrii]
          Length = 357

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 224/332 (67%), Positives = 280/332 (84%), Gaps = 1/332 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+ G    +   I+VVS+GSLGLDIALG+GG P+GR++EIYGPESSGKT
Sbjct: 23  QIEKQFGKGSIMRYGDN-EVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKT 81

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGTCAFVDAEHALD  YA KLGV+L +LLISQPDTGEQALEITD LV
Sbjct: 82  TLTLQVIAEMQKIGGTCAFVDAEHALDVQYAAKLGVNLTDLLISQPDTGEQALEITDALV 141

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT++I R+ C+++FIN
Sbjct: 142 RSGSVDLIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFIN 201

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  + + GN+TRVKVVKNK++ 
Sbjct: 202 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKGEEVVGNETRVKVVKNKVSP 261

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PFKQ EFDIMYG GIS  GE+IDLGV+A +VDKSGAW+S+ G R+GQG++N + +L+E+ 
Sbjct: 262 PFKQAEFDIMYGAGISREGEIIDLGVQAGVVDKSGAWYSYSGTRIGQGKDNVREYLKEHP 321

Query: 322 EIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           E+A  IE+ +R+N G+V+ +     +    +D
Sbjct: 322 ELAVEIENKVRENQGIVSRAATFPASEAEAED 353


>gi|196247558|ref|ZP_03146260.1| recA protein [Geobacillus sp. G11MC16]
 gi|196212342|gb|EDY07099.1| recA protein [Geobacillus sp. G11MC16]
          Length = 346

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 214/333 (64%), Positives = 266/333 (79%), Gaps = 2/333 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+  ALE AL QI+R +GKGAIM+LG Q      I  V SGSL LDIALG+GG+P+GR
Sbjct: 2   NQDRQAALEQALKQIERQFGKGAIMKLGEQAE--RQISTVPSGSLALDIALGVGGYPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD IYA+KLGV++  LL+SQPD
Sbjct: 60  IIEIYGPESSGKTTVALHAIAEVQKQGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDIIVIDSVAAL P+AEIEG+MG++  G+QARLMSQALRKL+ 
Sbjct: 120 TGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLSG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRL++RR   IK  + + GN
Sbjct: 180 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYASVRLEVRRAEQIKQGNDMVGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK+A PFK  + DIMYGEGIS  GE+ID+  +  IV KSG+W+S+K +RLGQ
Sbjct: 240 KTKIKVVKNKVAPPFKTADVDIMYGEGISREGEIIDMAAELDIVQKSGSWYSYKDERLGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           GREN+K FL+EN  IAE I   +R++ G+ A  
Sbjct: 300 GRENAKQFLKENPHIAEEIARAIRKHYGIDAGE 332


>gi|116119166|gb|ABJ74753.1| RecA [Burkholderia sp. M318]
          Length = 347

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 231/350 (66%), Positives = 296/350 (84%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 2   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 121 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVVGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IV+K+GAW+S+ G+++GQ
Sbjct: 241 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVNKAGAWYSYNGEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ G+VA   + +   N  +  D+++
Sbjct: 301 GKDNAREFLRENPEIAREIENRIRESLGVVA---MPDGVDNEAEAMDEEE 347


>gi|326791550|ref|YP_004309371.1| recA protein [Clostridium lentocellum DSM 5427]
 gi|326542314|gb|ADZ84173.1| recA protein [Clostridium lentocellum DSM 5427]
          Length = 353

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 215/350 (61%), Positives = 272/350 (77%), Gaps = 6/350 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN   K KAL+AA+SQIQ+ +GKG+IM+LG        +    +GSL LDIALG+GG PK
Sbjct: 1   MNDESK-KALDAAISQIQKQFGKGSIMKLGEATDT--NVHTFPTGSLSLDIALGVGGLPK 57

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVE+YGPESSGKTT+ LH IA+ QK GG  AF+DAEHALD  YA KLGV++  L ISQ
Sbjct: 58  GRIVEVYGPESSGKTTVTLHMIAEVQKQGGIAAFIDAEHALDPSYAAKLGVNIDELYISQ 117

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI + +VRSGA+DIIV+DSVAAL PRAEIEGDMG+S  G+QARLMSQALRKL
Sbjct: 118 PDNGEQALEIAETMVRSGAIDIIVVDSVAALVPRAEIEGDMGDSHMGLQARLMSQALRKL 177

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T  I++SKC ++FINQ+R K+GVMFGS ETTTGG ALKFY+S+RLD+R++ ++K  +   
Sbjct: 178 TGVINKSKCTVIFINQLREKVGVMFGSNETTTGGRALKFYASIRLDVRKIETLKQSNEFI 237

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G++TRVKVVKNK+A PF+Q EFDIMYGEGIS  G+++DL     IV+KSGAW+S+   RL
Sbjct: 238 GSRTRVKVVKNKVAPPFQQAEFDIMYGEGISKEGDVLDLATNIDIVNKSGAWYSYGDLRL 297

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           GQGREN+KI+++E+ E+   IE+ +R + G+ A   L E A  TKD+ + 
Sbjct: 298 GQGRENAKIYIKEHPELLLEIENKVRSHYGISA---LDETAHETKDEMND 344


>gi|88798291|ref|ZP_01113877.1| recombinase A [Reinekea sp. MED297]
 gi|88779067|gb|EAR10256.1| recombinase A [Reinekea sp. MED297]
          Length = 365

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 225/350 (64%), Positives = 282/350 (80%), Gaps = 4/350 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL AALSQI+R +GKG++M++G Q  +   +  +S+GSLGLDIALGIGG PKGR+
Sbjct: 8   TNKEKALSAALSQIERQFGKGSVMRMGDQEKV--NVPAISTGSLGLDIALGIGGLPKGRV 65

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTL L  IA++QK GGTCAFVDAEHALD  YA KLGV++ +LL+SQPDT
Sbjct: 66  VEIYGPESSGKTTLTLQVIAEAQKAGGTCAFVDAEHALDPNYAGKLGVNVDDLLVSQPDT 125

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +
Sbjct: 126 GEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDHHVGLQARLMSQALRKITGN 185

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I  + C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR G+IKD D + G++
Sbjct: 186 IKTANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGTIKDGDEVVGSE 245

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQ EF IMYG+GI   GE+IDLGVK  +V+KSGAW+S+KG ++GQG
Sbjct: 246 TRVKVVKNKVAPPFKQAEFQIMYGKGIYHLGEVIDLGVKIGLVEKSGAWYSYKGNKIGQG 305

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           + N+  FL EN E+A+ IE+ +R     + D    +PA       +K ++
Sbjct: 306 KANAAKFLGENPEMAQEIEAAIRAKY--LEDQSDVKPAEADAKAEEKAES 353


>gi|167550335|ref|ZP_02344092.1| protein RecA [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|168230885|ref|ZP_02655943.1| protein RecA [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|194469905|ref|ZP_03075889.1| protein RecA [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194456269|gb|EDX45108.1| protein RecA [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|205324866|gb|EDZ12705.1| protein RecA [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205334494|gb|EDZ21258.1| protein RecA [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
          Length = 353

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 211/348 (60%), Positives = 281/348 (80%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            N+  +L+EN   A+ IE  +R+      ++       +++  A+ ++
Sbjct: 304 ANATTWLKENPATAKEIEKRVRELLLSNQNTTPDFAVDDSEGVAETNE 351


>gi|16761605|ref|NP_457222.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|16766135|ref|NP_461750.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29143089|ref|NP_806431.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|62181332|ref|YP_217749.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161615727|ref|YP_001589692.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|167994128|ref|ZP_02575220.1| protein RecA [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168235857|ref|ZP_02660915.1| protein RecA [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168245260|ref|ZP_02670192.1| protein RecA [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168262060|ref|ZP_02684033.1| protein RecA [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|168464049|ref|ZP_02697966.1| protein RecA [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|168820488|ref|ZP_02832488.1| protein RecA [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194446772|ref|YP_002042070.1| recombinase A [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194451484|ref|YP_002046789.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194736708|ref|YP_002115781.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197250628|ref|YP_002147725.1| recombinase A [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197263607|ref|ZP_03163681.1| protein RecA [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|198241828|ref|YP_002216800.1| recombinase A [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|200386699|ref|ZP_03213311.1| protein RecA [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|204928070|ref|ZP_03219270.1| protein RecA [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205353773|ref|YP_002227574.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207858093|ref|YP_002244744.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213028317|ref|ZP_03342764.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
 gi|213051937|ref|ZP_03344815.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
 gi|213426123|ref|ZP_03358873.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213579899|ref|ZP_03361725.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
 gi|213648097|ref|ZP_03378150.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi
           str. J185]
 gi|224584607|ref|YP_002638405.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|238909595|ref|ZP_04653432.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|289824465|ref|ZP_06544041.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|54039032|sp|P65978|RECA_SALTI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|54041792|sp|P65977|RECA_SALTY RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|76363339|sp|Q57KU4|RECA_SALCH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|189039605|sp|A9N0C5|RECA_SALPB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226723638|sp|B5F352|RECA_SALA4 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226726276|sp|B5FSY0|RECA_SALDC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226726295|sp|B5QV78|RECA_SALEP RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226726296|sp|B5RDF4|RECA_SALG2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238690630|sp|B4TF13|RECA_SALHS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238693603|sp|B4T3A0|RECA_SALNS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238693680|sp|B4TT06|RECA_SALSV RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|254790444|sp|C0PWM2|RECA_SALPC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|25300503|pir||AH0843 RecA protein [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16421374|gb|AAL21709.1| DNA strand exchange and recombination protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|16503906|emb|CAD05935.1| RecA protein [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29138722|gb|AAO70291.1| recA protein [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|62128965|gb|AAX66668.1| DNA strand exchange and recombination protein with proteiase and
           nuclease activity [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|109453380|gb|ABG34170.1| RecA [Salmonella enterica subsp. enterica]
 gi|109453382|gb|ABG34171.1| RecA [Salmonella enterica subsp. enterica]
 gi|109453384|gb|ABG34172.1| RecA [Salmonella enterica subsp. enterica]
 gi|109453386|gb|ABG34173.1| RecA [Salmonella enterica subsp. enterica]
 gi|109453388|gb|ABG34174.1| RecA [Salmonella enterica subsp. enterica]
 gi|109453390|gb|ABG34175.1| RecA [Salmonella enterica subsp. enterica]
 gi|109453392|gb|ABG34176.1| RecA [Salmonella enterica subsp. enterica]
 gi|109453394|gb|ABG34177.1| RecA [Salmonella enterica subsp. enterica]
 gi|109453396|gb|ABG34178.1| RecA [Salmonella enterica subsp. enterica]
 gi|109453398|gb|ABG34179.1| RecA [Salmonella enterica subsp. enterica]
 gi|109453400|gb|ABG34180.1| RecA [Salmonella enterica subsp. enterica]
 gi|161365091|gb|ABX68859.1| hypothetical protein SPAB_03518 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194405435|gb|ACF65657.1| protein RecA [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194409788|gb|ACF70007.1| protein RecA [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194712210|gb|ACF91431.1| protein RecA [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195633723|gb|EDX52137.1| protein RecA [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197214331|gb|ACH51728.1| protein RecA [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197241862|gb|EDY24482.1| protein RecA [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197290652|gb|EDY30006.1| protein RecA [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197936344|gb|ACH73677.1| protein RecA [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|199603797|gb|EDZ02342.1| protein RecA [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|204322392|gb|EDZ07589.1| protein RecA [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205273554|emb|CAR38541.1| Recombinase A [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205327960|gb|EDZ14724.1| protein RecA [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205335992|gb|EDZ22756.1| protein RecA [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205342838|gb|EDZ29602.1| protein RecA [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205349184|gb|EDZ35815.1| protein RecA [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|206709896|emb|CAR34249.1| Recombinase A [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224469134|gb|ACN46964.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261247965|emb|CBG25798.1| RecA protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267994946|gb|ACY89831.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301159389|emb|CBW18907.1| RecA protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312913847|dbj|BAJ37821.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|320087232|emb|CBY96997.1| Protein recA Recombinase A [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321223382|gb|EFX48448.1| RecA protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322614352|gb|EFY11283.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322621583|gb|EFY18436.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322624444|gb|EFY21277.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322628775|gb|EFY25558.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322633498|gb|EFY30240.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635926|gb|EFY32634.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322639634|gb|EFY36319.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322646817|gb|EFY43320.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322650585|gb|EFY46990.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322654803|gb|EFY51122.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322659023|gb|EFY55276.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322664410|gb|EFY60604.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322668341|gb|EFY64498.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322673679|gb|EFY69780.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322677740|gb|EFY73803.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322681430|gb|EFY77462.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322683832|gb|EFY79842.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|322715815|gb|EFZ07386.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323131180|gb|ADX18610.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323193779|gb|EFZ78982.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323200249|gb|EFZ85331.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323203248|gb|EFZ88277.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323205505|gb|EFZ90470.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323212793|gb|EFZ97604.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323216319|gb|EGA01046.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323221067|gb|EGA05498.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323226888|gb|EGA11070.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323230828|gb|EGA14946.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323234821|gb|EGA18907.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323238860|gb|EGA22910.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323241560|gb|EGA25591.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323248293|gb|EGA32229.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323251123|gb|EGA34996.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323255838|gb|EGA39586.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323263141|gb|EGA46679.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323264354|gb|EGA47860.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323271181|gb|EGA54609.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|326624559|gb|EGE30904.1| recombinase A [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
 gi|326628881|gb|EGE35224.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 353

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 211/348 (60%), Positives = 281/348 (80%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            N+  +L+EN   A+ IE  +R+      ++       +++  A+ ++
Sbjct: 304 ANATTWLKENPATAKEIEKRVRELLLSNQNATPDFAVDDSEGVAETNE 351


>gi|217969145|ref|YP_002354379.1| recombinase A [Thauera sp. MZ1T]
 gi|217506472|gb|ACK53483.1| recA protein [Thauera sp. MZ1T]
          Length = 345

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 227/327 (69%), Positives = 280/327 (85%), Gaps = 1/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K+KAL AALSQI++ +GKG+IM++G  GSI   I+ VS+GSLGLDIALG+GG P+GR+V
Sbjct: 4   NKAKALSAALSQIEKQFGKGSIMRMGD-GSIERDIQTVSTGSLGLDIALGLGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGVD+++LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVGYAEKLGVDIEDLLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG VDI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT++I
Sbjct: 123 EQALEIADMLVRSGGVDIVVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR G+IK  D + G++T
Sbjct: 183 KRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRTGTIKKGDEVVGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFK+  FDI+YGEGIS  GE+IDLGV+  IVDKSGAW+++KG ++GQG+
Sbjct: 243 RVKVVKNKVSPPFKEAHFDILYGEGISREGEIIDLGVEHKIVDKSGAWYAYKGDKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           +NS+ FLR N  +A  IE+ +R   GL
Sbjct: 303 DNSREFLRANPVLAREIENKVRVAVGL 329


>gi|120598088|ref|YP_962662.1| recombinase A [Shewanella sp. W3-18-1]
 gi|146293841|ref|YP_001184265.1| recombinase A [Shewanella putrefaciens CN-32]
 gi|166220680|sp|A4Y933|RECA_SHEPC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166220682|sp|A1RHG3|RECA_SHESW RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|120558181|gb|ABM24108.1| recA protein [Shewanella sp. W3-18-1]
 gi|145565531|gb|ABP76466.1| recA protein [Shewanella putrefaciens CN-32]
 gi|319427215|gb|ADV55289.1| recA protein [Shewanella putrefaciens 200]
          Length = 357

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 214/348 (61%), Positives = 273/348 (78%), Gaps = 2/348 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL A LSQI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P GRI
Sbjct: 5   PNKEKALAAVLSQIEKQFGKGSIMKLGEDRSM--DVETISTGSLSLDVALGAGGLPMGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDT
Sbjct: 63  VEIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  +
Sbjct: 123 GEQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           + +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+
Sbjct: 183 LKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNE 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A+PFKQ EF I+YG+GI+  GEL+DLGV   +++K+GAW+S+KG ++GQG
Sbjct: 243 TRVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           R N+  +L EN  IA  I+  LR+       +L    + +   + + D
Sbjct: 303 RANAGKYLTENPAIAAEIDKTLRELLLSNPSALASSASDDESTEGNID 350


>gi|251779396|ref|ZP_04822316.1| protein RecA [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083711|gb|EES49601.1| protein RecA [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 356

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 218/352 (61%), Positives = 280/352 (79%), Gaps = 3/352 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           ++K KA+E A+ QI++ +GKG++M+LG    +   I+ +S+G L LDIALGIGG PKGRI
Sbjct: 6   INKLKAIENAMGQIEKQFGKGSVMKLGEDSVL--NIDAISTGCLDLDIALGIGGVPKGRI 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH  A++QK GG   F+DAEHALD  YAR LGVD +NL++SQPDT
Sbjct: 64  VEIYGPESSGKTTIALHIAAEAQKKGGAVGFIDAEHALDPSYARNLGVDTENLIVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQ LEI + LVRSGA+D+I++DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL  +
Sbjct: 124 GEQGLEIAEALVRSGAIDVIIVDSVAALVPKAEIEGEMGDSHIGLQARLMSQALRKLAGT 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS++ CI +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLD+RR+ SIK  D I GN+
Sbjct: 184 ISKTNCIAIFINQLREKVGVMFGSPETTTGGRALKFYASVRLDVRRIDSIKQGDGIVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TR+KV KNK+A PFKQ EFDIMY EGIS  G ++D+GVK  IV KSGAWFS+   RLGQG
Sbjct: 244 TRIKVTKNKVAPPFKQAEFDIMYNEGISREGNIVDVGVKEEIVQKSGAWFSYGDIRLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL-VADSLLQEPAINTKDDADKDDTD 360
           REN+K +L+EN E+A +IE+ +R+   L + D++++E A   K   +K+ +D
Sbjct: 304 RENAKQYLKENPEVALDIENQIREKHNLPLMDAVIKETAQEVKGKENKEQSD 355


>gi|261291943|gb|ACX69976.1| RecA [Burkholderia cepacia]
          Length = 346

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 233/350 (66%), Positives = 296/350 (84%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 120 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 180 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 240 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ G+VA   + + A N  +  D+++
Sbjct: 300 GKDNAREFLRENPEIAREIENRIRESLGVVA---MPDGAGNEAEAMDEEE 346


>gi|30313398|gb|AAM55293.1| RecA [Burkholderia cepacia]
          Length = 347

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 232/350 (66%), Positives = 296/350 (84%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 2   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QA LMSQALRKLT 
Sbjct: 121 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQALLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 241 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ G+VA   + + A N  +  D+++
Sbjct: 301 GKDNAREFLRENPEIAREIENRIRESLGVVA---MPDGAGNEAEAMDEEE 347


>gi|110834662|ref|YP_693521.1| recA protein [Alcanivorax borkumensis SK2]
 gi|110647773|emb|CAL17249.1| recA protein [Alcanivorax borkumensis SK2]
          Length = 344

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 217/327 (66%), Positives = 278/327 (85%), Gaps = 2/327 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + DKSKAL AALSQI+R +GKG++M++G +    E +  +S+GSLGLD+ALGIGG PKGR
Sbjct: 1   MSDKSKALSAALSQIERQFGKGSVMRMGDRKR--ERMPSISTGSLGLDVALGIGGLPKGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEIYGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +L++SQPD
Sbjct: 59  IVEIYGPESSGKTTLTLSVIAQAQKKGATCAFVDAEHALDPDYAEKLGVNVDDLIVSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITDMLVRSGAVD++++DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T 
Sbjct: 119 TGEQALEITDMLVRSGAVDVVIVDSVAALVPKAEIEGEMGDTHVGLQARLMSQALRKITG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           ++  +  ++VFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G++K  D +TGN
Sbjct: 179 NVKNANTLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAVKQGDEVTGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF+Q EF I+YG+GI+  GE++DLGV+  +VDKSGAW+++KG ++GQ
Sbjct: 239 ETRVKVVKNKVSPPFRQAEFQILYGQGINQLGEVLDLGVQQGLVDKSGAWYAYKGDKIGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNA 335
           G++N+  +LREN  IAE IE+ +R   
Sbjct: 299 GKQNACEYLRENPAIAEEIETEIRARL 325


>gi|317402893|gb|EFV83435.1| RecA protein [Achromobacter xylosoxidans C54]
          Length = 354

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 226/336 (67%), Positives = 285/336 (84%), Gaps = 3/336 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           SQI++ +GKG+IM+ G    +   I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGK
Sbjct: 22  SQIEKQFGKGSIMRYGDN-EVSHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK 80

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  +A+ QK GGTCAFVDAEHALD  YA KLGV+L +LLISQPDTGEQALEITD L
Sbjct: 81  TTLTLQVVAEMQKLGGTCAFVDAEHALDVQYASKLGVNLSDLLISQPDTGEQALEITDAL 140

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSG+VD+IV+DSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT++I ++ C+++FI
Sbjct: 141 VRSGSVDLIVVDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFI 200

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A
Sbjct: 201 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKGDEVVGNETRVKVVKNKVA 260

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
            PFKQ EFDIMYG GIS  GE+IDLGV A++VDKSGAW+S+ G R+GQG++N + +L+E+
Sbjct: 261 PPFKQAEFDIMYGAGISREGEIIDLGVAANVVDKSGAWYSYNGNRIGQGKDNVREYLKEH 320

Query: 321 IEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
            E+A  IE+ +R+N G+V+ +    P    +DD+++
Sbjct: 321 KELAIEIENRVRENQGIVSRAAEFVPTA--EDDSEE 354


>gi|262172370|ref|ZP_06040048.1| RecA protein [Vibrio mimicus MB-451]
 gi|261893446|gb|EEY39432.1| RecA protein [Vibrio mimicus MB-451]
          Length = 354

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 209/345 (60%), Positives = 274/345 (79%), Gaps = 2/345 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTG
Sbjct: 62  EIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            N+  +L+EN EIA+ ++  LR+      +  L     +  DD +
Sbjct: 302 ANACKYLKENTEIAKTLDKKLREMLLNPENMQLTGETSSAADDVE 346


>gi|152971553|ref|YP_001336662.1| recombinase A [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|238896150|ref|YP_002920886.1| recombinase A [Klebsiella pneumoniae NTUH-K2044]
 gi|262043944|ref|ZP_06017029.1| recombinase A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|329999037|ref|ZP_08303292.1| RecA protein [Klebsiella sp. MS 92-3]
 gi|166220653|sp|A6TCW1|RECA_KLEP7 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|150956402|gb|ABR78432.1| recombinase A [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|238548468|dbj|BAH64819.1| recombinase A [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|259038708|gb|EEW39894.1| recombinase A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|328538477|gb|EGF64592.1| RecA protein [Klebsiella sp. MS 92-3]
          Length = 352

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 213/350 (60%), Positives = 283/350 (80%), Gaps = 4/350 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
            N+  +L+EN   A+ IE  +R+   L+ +   +   +   +DA++ + D
Sbjct: 304 ANAITWLKENPAAAKEIEKKVREL--LLNNQDAKPDFVVDGNDAEETEQD 351


>gi|157326981|gb|ABV44603.1| RecA [Burkholderia multivorans]
          Length = 321

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 223/320 (69%), Positives = 279/320 (87%), Gaps = 1/320 (0%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           L+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSG
Sbjct: 1   LAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSG 59

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD 
Sbjct: 60  KTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDA 119

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++F
Sbjct: 120 LVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIF 179

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           INQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK+
Sbjct: 180 INQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKV 239

Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
           + PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLRE
Sbjct: 240 SPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRE 299

Query: 320 NIEIAENIESLLRQNAGLVA 339
           N EIA  IE+ +R++ G+ A
Sbjct: 300 NPEIAREIENRIRESLGVAA 319


>gi|238761733|ref|ZP_04622708.1| hypothetical protein ykris0001_12160 [Yersinia kristensenii ATCC
           33638]
 gi|238700247|gb|EEP92989.1| hypothetical protein ykris0001_12160 [Yersinia kristensenii ATCC
           33638]
          Length = 354

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 210/350 (60%), Positives = 274/350 (78%), Gaps = 2/350 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGDVVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
            N+  +L+EN  +A  ++  LR+      +           D+AD+   +
Sbjct: 304 ANASNYLKENPAVAAELDKKLREMLLNGGNGEQPVATAVLADEADETSEE 353


>gi|238784096|ref|ZP_04628110.1| hypothetical protein yberc0001_12020 [Yersinia bercovieri ATCC
           43970]
 gi|238714942|gb|EEQ06940.1| hypothetical protein yberc0001_12020 [Yersinia bercovieri ATCC
           43970]
          Length = 354

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 209/350 (59%), Positives = 273/350 (78%), Gaps = 2/350 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGDVVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
            N+  +L+EN  +A  ++  LR+      +           D+ D+   +
Sbjct: 304 ANASNYLKENPAVAAELDKKLREMLLNGGNGEQPVVTATVADETDETSEE 353


>gi|283786754|ref|YP_003366619.1| RecA protein (recombinase A) [Citrobacter rodentium ICC168]
 gi|282950208|emb|CBG89844.1| RecA protein (recombinase A) [Citrobacter rodentium ICC168]
          Length = 353

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 213/348 (61%), Positives = 280/348 (80%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            N+  +L+EN   A+ IE  +R+      DS       + +  A+ ++
Sbjct: 304 ANATTWLKENPATAKEIEKKVRELLLNNQDSTPDFSVDDGEGVAETNE 351


>gi|47571272|gb|AAT35793.1| RecA [Mycobacterium gordonae]
          Length = 324

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 203/322 (63%), Positives = 264/322 (81%), Gaps = 2/322 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 5   PDREKALELAMAQIEKSYGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 63  IEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T +
Sbjct: 123 GEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD  +  GN+
Sbjct: 183 LNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTNAVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV    + KSGAWF+++G++LGQG
Sbjct: 243 TRVKVVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVDQGFIRKSGAWFTYEGEQLGQG 302

Query: 310 RENSKIFLRENIEIAENIESLL 331
           +EN++ FL EN +I   IE  +
Sbjct: 303 KENARNFLLENGDIGNEIEKKI 324


>gi|110339314|gb|ABG67918.1| RecA [Burkholderia cenocepacia]
 gi|110339318|gb|ABG67920.1| RecA [Burkholderia cenocepacia]
 gi|209967939|gb|ACB12744.2| RecA [Burkholderia cepacia]
 gi|254575554|gb|ACT68291.1| RecA [Burkholderia cepacia]
          Length = 346

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 232/350 (66%), Positives = 295/350 (84%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 120 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 180 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 240 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ G+V+   + +   N  +  D+++
Sbjct: 300 GKDNAREFLRENPEIAREIENRIRESLGVVS---MPDGVANEAEAMDEEE 346


>gi|110339316|gb|ABG67919.1| RecA [Burkholderia cenocepacia]
          Length = 346

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 232/350 (66%), Positives = 295/350 (84%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 120 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 180 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 240 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ G+V+   + +   N  +  D+++
Sbjct: 300 GKDNAREFLRENPEIAREIENRIRESLGVVS---MPDGVANEAEAMDEEE 346


>gi|308173657|ref|YP_003920362.1| multifunctional SOS repair factor [Bacillus amyloliquefaciens DSM
           7]
 gi|25004791|emb|CAD56687.1| RecA protein [Bacillus amyloliquefaciens]
 gi|307606521|emb|CBI42892.1| multifunctional SOS repair factor [Bacillus amyloliquefaciens DSM
           7]
 gi|328553411|gb|AEB23903.1| recombinase A [Bacillus amyloliquefaciens TA208]
 gi|328911797|gb|AEB63393.1| Protein recA [Bacillus amyloliquefaciens LL3]
          Length = 347

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 207/337 (61%), Positives = 271/337 (80%), Gaps = 2/337 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG +      I  V SGSL LD ALGIGG+P+GR
Sbjct: 1   MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTR--ISTVPSGSLALDTALGIGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT+ALH IA+ Q+ GG  AF+DAEHALD +YA+KLGV+++ LL+SQPD
Sbjct: 59  IIEVYGPESSGKTTVALHAIAEVQEKGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDI+V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K  + + GN
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TR+KVVKNK+A PF+  E DIMYGEGIS  GE+IDLG +  IV KSG+W+S++ +RLGQ
Sbjct: 239 KTRIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           GREN+K FL+EN +I   I+  +R++ GL  + + ++
Sbjct: 299 GRENAKQFLKENKDIMLMIQEQIREHYGLDNNGVTEK 335


>gi|126256484|gb|ABO09807.1| RecA [Burkholderia sp. Y20]
          Length = 347

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 233/350 (66%), Positives = 296/350 (84%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 2   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 121 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVD++GAW+S+ G+++GQ
Sbjct: 241 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDRAGAWYSYNGEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ G+VA   + + A N  +  D+++
Sbjct: 301 GKDNAREFLRENPEIAREIENRIRESLGVVA---MPDGAGNEAEAMDEEE 347


>gi|197104451|ref|YP_002129828.1| recombinase A protein [Phenylobacterium zucineum HLK1]
 gi|196477871|gb|ACG77399.1| recombinase A protein [Phenylobacterium zucineum HLK1]
          Length = 361

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 243/350 (69%), Positives = 295/350 (84%), Gaps = 1/350 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
               +K +ALEAAL+QI R +GKG++M+LG +G I E IE VS+GSLGLD+ALGIGG PK
Sbjct: 11  KEDGEKQRALEAALAQIDRAFGKGSVMKLGDKGKIVE-IESVSTGSLGLDMALGIGGLPK 69

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYGPESSGKTTLALH +A+ QK GGT AFVDAEHALD  YA KLGV+L +LL++Q
Sbjct: 70  GRIVEIYGPESSGKTTLALHVVAEVQKAGGTAAFVDAEHALDPSYAHKLGVNLDDLLVAQ 129

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEITD LVRS AVD+IV+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKL
Sbjct: 130 PDTGEQALEITDTLVRSNAVDVIVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKL 189

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+SIS++K +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR GS+K +D I 
Sbjct: 190 TASISKAKTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRTGSVKQRDEIV 249

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN  RVKVVKNK+A PF++VEFDIMYGEGIS  GE+IDLGVKA +V+K+G+WFSF  QR+
Sbjct: 250 GNNVRVKVVKNKVAPPFREVEFDIMYGEGISKLGEIIDLGVKAGVVEKAGSWFSFNSQRI 309

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           GQGR+N + FL++N +IAE IE+ +R     + + LL  P+    D+AD 
Sbjct: 310 GQGRDNVREFLKQNPDIAEQIEAKVRGAKSAIEEELLVGPSEGEGDEADG 359


>gi|254481187|ref|ZP_05094432.1| protein RecA [marine gamma proteobacterium HTCC2148]
 gi|214038350|gb|EEB79012.1| protein RecA [marine gamma proteobacterium HTCC2148]
          Length = 347

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 220/348 (63%), Positives = 281/348 (80%), Gaps = 3/348 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL+AAL+QI+R +GKG +M++G      E I  +S+GSLGLDIALGIGG PKGRI
Sbjct: 3   ANKEKALDAALTQIERQFGKGTVMRMGDVK--HEAIPSISTGSLGLDIALGIGGLPKGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
            EIYGPESSGKTTL L  IA++QK GGT AF+DAEHALD  YA KLGV +  L++SQPDT
Sbjct: 61  CEIYGPESSGKTTLTLQVIAEAQKAGGTAAFIDAEHALDPQYAEKLGVKMDELIMSQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALE+ +MLVRSGAVD++VIDSVAALTP+AEIEGDMG+S  G+QARL+SQA+RKLT++
Sbjct: 121 GEQALEVAEMLVRSGAVDVLVIDSVAALTPKAEIEGDMGDSHVGLQARLLSQAMRKLTAA 180

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++KD D + GN+
Sbjct: 181 IKQTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKDGDEVVGNE 240

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EF IMYG+GI   GE+ID GVK ++VDKSGAW+++KG ++GQG
Sbjct: 241 TRVKVVKNKVSPPFKQAEFQIMYGKGIYHMGEVIDWGVKLNLVDKSGAWYAYKGDKIGQG 300

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           + N+  FL  N  +A  IE+ +R+   L A    +E   + +  A+++
Sbjct: 301 KANASKFLEANPAVANEIEAAIREQT-LSAPKPAEEEVQSEEPAAEQE 347


>gi|242133678|gb|ACS87950.1| RecA [Burkholderia cepacia]
 gi|242133682|gb|ACS87952.1| RecA [Burkholderia cepacia]
          Length = 336

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 230/331 (69%), Positives = 287/331 (86%), Gaps = 1/331 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 120 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 180 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 240 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           G++N++ FLREN EIA  IE+ +R++ G+V+
Sbjct: 300 GKDNAREFLRENPEIAREIENRIRESLGVVS 330


>gi|30313406|gb|AAM55296.1| RecA [Burkholderia cepacia]
          Length = 331

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 224/320 (70%), Positives = 278/320 (86%), Gaps = 1/320 (0%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           L+QI++ +GKG+IM++G      E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSG
Sbjct: 4   LAQIEKQFGKGSIMRMGD-AEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSG 62

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD 
Sbjct: 63  KTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDA 122

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++F
Sbjct: 123 LVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIF 182

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           INQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK+
Sbjct: 183 INQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKV 242

Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
           A PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLRE
Sbjct: 243 APPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRE 302

Query: 320 NIEIAENIESLLRQNAGLVA 339
           N EIA  IE+ +R++ G+VA
Sbjct: 303 NPEIAREIENRIRESLGVVA 322


>gi|113969469|ref|YP_733262.1| recombinase A [Shewanella sp. MR-4]
 gi|114046702|ref|YP_737252.1| recombinase A [Shewanella sp. MR-7]
 gi|122944845|sp|Q0HXG0|RECA_SHESR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123130637|sp|Q0HL62|RECA_SHESM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|113884153|gb|ABI38205.1| recA protein [Shewanella sp. MR-4]
 gi|113888144|gb|ABI42195.1| recA protein [Shewanella sp. MR-7]
          Length = 357

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 215/351 (61%), Positives = 277/351 (78%), Gaps = 9/351 (2%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL A LSQI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P GRI
Sbjct: 5   PNKEKALAAVLSQIEKQFGKGSIMKLGEDRSM--DVETISTGSLSLDVALGAGGLPMGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDT
Sbjct: 63  VEIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  +
Sbjct: 123 GEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           + +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+
Sbjct: 183 LKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A+PFKQ EF I+YG+GI+  GEL+DLGV   +++K+GAW+S+KG ++GQG
Sbjct: 243 TRVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           R N+  +L EN  IA  I+  LR+        LL  PA  +   +D ++++
Sbjct: 303 RANAGKYLTENPAIAAEIDKTLRE-------LLLSNPAALSSSASDDENSE 346


>gi|260773535|ref|ZP_05882451.1| RecA protein [Vibrio metschnikovii CIP 69.14]
 gi|260612674|gb|EEX37877.1| RecA protein [Vibrio metschnikovii CIP 69.14]
          Length = 349

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 210/347 (60%), Positives = 274/347 (78%), Gaps = 2/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMLLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGV + +LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTLTLELIASAQREGKTCAFIDAEHALDPIYAQKLGVKINDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GEL+DLGVK  +++KSGAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLIEKSGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
            N+  FLRE+ E ++ I+S LR+         L EP      + +++
Sbjct: 302 ANACKFLREHPEASKAIDSKLREMLLSPEQVPLDEPEFGVIPEQEEE 348


>gi|255318935|ref|ZP_05360160.1| protein RecA [Acinetobacter radioresistens SK82]
 gi|262378327|ref|ZP_06071484.1| recA protein [Acinetobacter radioresistens SH164]
 gi|255303952|gb|EET83144.1| protein RecA [Acinetobacter radioresistens SK82]
 gi|262299612|gb|EEY87524.1| recA protein [Acinetobacter radioresistens SH164]
          Length = 348

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 221/343 (64%), Positives = 273/343 (79%), Gaps = 2/343 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AALSQI++ +GK  +M+LG      + +E VS+GSL LDIALGIGG PKGRIV
Sbjct: 4   NKSKALNAALSQIEKQFGKNTVMRLGDNT--VQAVEAVSTGSLTLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ L  IAQ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD G
Sbjct: 62  EIYGPESSGKTTMTLQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IV+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T + 
Sbjct: 122 EQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNA 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G +K+ D I G++T
Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIIGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNKMA PFK+  F I+YG+G++  GELIDL V+  I+ K+GAW+S++G ++GQG+
Sbjct: 242 KVKVVKNKMAPPFKEALFQILYGKGVNHLGELIDLAVQQEIIQKAGAWYSYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
            N    L EN E+A  +E L+R+      ++ L E       D
Sbjct: 302 NNVIRHLEENPELAVEVERLIRELLLTTNNAPLAEDEAEEVPD 344


>gi|295399886|ref|ZP_06809867.1| recA protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|312111602|ref|YP_003989918.1| recA protein [Geobacillus sp. Y4.1MC1]
 gi|294978289|gb|EFG53886.1| recA protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|311216703|gb|ADP75307.1| recA protein [Geobacillus sp. Y4.1MC1]
          Length = 350

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 214/345 (62%), Positives = 271/345 (78%), Gaps = 2/345 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+  ALE AL QI+R +GKG+IM+LG Q      I  VSSGSL LDIALG+GG+P+GR
Sbjct: 2   NQDRQAALEQALKQIERQFGKGSIMRLGEQTD--RKISTVSSGSLALDIALGVGGYPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD IYA+KLGV++  LL+SQPD
Sbjct: 60  IIEIYGPESSGKTTVALHAIAEVQKQGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDIIVIDSVAAL P+AEIEG+MG++  G+QARLMSQALRKL+ 
Sbjct: 120 TGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLSG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRL++RR   IK  + + GN
Sbjct: 180 AINKSKAIAIFINQIREKVGVMFGNPETTPGGRALKFYASVRLEVRRAEQIKQGNEMVGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK+A PFK  + DIMYGEGIS  GE+ID+  +  IV KSG+W+S+K +RLGQ
Sbjct: 240 KTKIKVVKNKVAPPFKTADVDIMYGEGISREGEIIDMASELDIVQKSGSWYSYKDERLGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           GREN+K FL+EN  IAE I   +R++ G+ + S         +++
Sbjct: 300 GRENAKQFLKENPHIAEEIAQEIRKHYGIESPSSSNGANELQQEE 344


>gi|254427618|ref|ZP_05041325.1| protein RecA [Alcanivorax sp. DG881]
 gi|196193787|gb|EDX88746.1| protein RecA [Alcanivorax sp. DG881]
          Length = 344

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 218/346 (63%), Positives = 280/346 (80%), Gaps = 2/346 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + DK KAL AALSQI+R +GKG++M++G +    E +  +S+GSLGLD+ALGIGG PKGR
Sbjct: 1   MSDKGKALSAALSQIERQFGKGSVMRMGDRKR--ERMPSISTGSLGLDVALGIGGLPKGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEIYGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +L++SQPD
Sbjct: 59  IVEIYGPESSGKTTLTLSVIAQAQKKGATCAFVDAEHALDPDYAEKLGVNVDDLIVSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITDMLVRSGAVD++++DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T 
Sbjct: 119 TGEQALEITDMLVRSGAVDVVIVDSVAALVPKAEIEGEMGDTHVGLQARLMSQALRKITG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           ++  +  ++VFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G++K  D +TGN
Sbjct: 179 NVKNANTLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAVKQGDEVTGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF+Q EF I+YG+GI+  GE++DLGV+  +VDKSGAW+++KG ++GQ
Sbjct: 239 ETRVKVVKNKVSPPFRQAEFQILYGQGINQLGEVLDLGVQQGLVDKSGAWYAYKGDKIGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           G++N+  +LREN  IAE IE+ +R        +          DD 
Sbjct: 299 GKQNACEYLRENPAIAEEIETEIRARLLPDPTAEAPVEEEAAADDE 344


>gi|288550328|ref|ZP_05969999.2| protein RecA [Enterobacter cancerogenus ATCC 35316]
 gi|288315474|gb|EFC54412.1| protein RecA [Enterobacter cancerogenus ATCC 35316]
          Length = 357

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 214/351 (60%), Positives = 284/351 (80%), Gaps = 6/351 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 11  NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 68

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  +A +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 69  EIYGPESSGKTTLTLQVVAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 128

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 129 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 188

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD +++ G++T
Sbjct: 189 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGENVVGSET 248

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 249 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGDKIGQGK 308

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
            N+  +L++N   A+ IE  +R+   L+ ++   +P     D AD ++T+ 
Sbjct: 309 ANAISWLKDNPAAAKEIEKKVRE---LLLNNQDSKPDF-VVDAADAEETNE 355


>gi|299136451|ref|ZP_07029634.1| recA protein [Acidobacterium sp. MP5ACTX8]
 gi|298600966|gb|EFI57121.1| recA protein [Acidobacterium sp. MP5ACTX8]
          Length = 357

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 207/344 (60%), Positives = 280/344 (81%), Gaps = 1/344 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+SKA+E ALSQ+++ +GKG++M+LG++ +I   I V+S+GS+  D ALG+GG P+GR++
Sbjct: 4   DRSKAIETALSQLEKQFGKGSVMRLGAKEAIG-PISVISTGSISFDAALGVGGVPRGRVI 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTT+ L  IA++QK GG  AFVDAEHALD  YA+KLGVD  NLL+SQPD G
Sbjct: 63  EIFGPESSGKTTITLQIIAEAQKNGGLAAFVDAEHALDPAYAKKLGVDTDNLLVSQPDYG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+D++V+DSVAAL P+AE++G+MG+S  G+QARLMSQALRKLT ++
Sbjct: 123 EQALEIVEALVRSGAIDVLVVDSVAALVPKAELDGEMGDSHMGLQARLMSQALRKLTGTV 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S+  L+FINQ+R KIGVMFG+PETTTGG ALKFYSSVR+DIRRVG++K+ D + GN+T
Sbjct: 183 SKSRTSLIFINQVREKIGVMFGNPETTTGGRALKFYSSVRIDIRRVGAVKEGDVVVGNRT 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VK+VKNK+A+PF+  EFDI++GEGIS  G+ +DL V  +IVDK+GAW+S++G+R+GQGR
Sbjct: 243 KVKIVKNKVAAPFRDAEFDILFGEGISREGDSLDLAVLHNIVDKAGAWYSYQGERIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           EN + FL+EN E+   I+S LR+  G+     ++ PA      A
Sbjct: 303 ENVRGFLKENKEVFGRIDSELRKKLGIKPADDVEIPAAPVDGPA 346


>gi|167766689|ref|ZP_02438742.1| hypothetical protein CLOSS21_01195 [Clostridium sp. SS2/1]
 gi|167711626|gb|EDS22205.1| hypothetical protein CLOSS21_01195 [Clostridium sp. SS2/1]
 gi|291558369|emb|CBL37169.1| protein RecA [butyrate-producing bacterium SSC/2]
          Length = 351

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 209/357 (58%), Positives = 278/357 (77%), Gaps = 6/357 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K KAL+AAL +I++ YGKG++M+LG   +    IEV  +GS+ LDIALG+GG PK
Sbjct: 1   MKQEEKLKALDAALVKIEKDYGKGSVMKLGEYQADRT-IEVTPTGSISLDIALGVGGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YA+ +GVD+ NL ISQ
Sbjct: 60  GRIIEIYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQ LEIT+ +VRSGA+DII++DSVAAL P+AEI+GDMG+S  G+QARLMSQALRKL
Sbjct: 120 PDTGEQGLEITETMVRSGAIDIIIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T  +S+  C ++FINQ+R K+GVMFG+PETTTGG ALKFYSS+RLD+RR  ++K    + 
Sbjct: 180 TGVVSKFNCTVIFINQLREKVGVMFGNPETTTGGRALKFYSSIRLDVRRTETLKQAGEMI 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR+KVVKNK+A PFKQ EFDIM+G+GIS +G+++DL   A I+ KSGAW+++ G+++
Sbjct: 240 GNRTRIKVVKNKVAPPFKQAEFDIMFGKGISKYGDILDLAADADIIHKSGAWYAYNGEKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           GQGRENSK +L ++ +IAE +E  +R + GL     L+E A N  +D   +   + E
Sbjct: 300 GQGRENSKKYLEDHPDIAETVEHAIRVHYGL-----LEEDAENANNDPKAEAQVSEE 351


>gi|89075065|ref|ZP_01161506.1| recombinase A [Photobacterium sp. SKA34]
 gi|89049152|gb|EAR54717.1| recombinase A [Photobacterium sp. SKA34]
          Length = 349

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 218/349 (62%), Positives = 275/349 (78%), Gaps = 4/349 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L TIA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLETIAAAQRKGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +V+K+GAW+S++G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKQAETQILYGQGFNRNGELIDLGVKHKLVEKAGAWYSYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
            NS  +L EN  IA  IE  LR    L+      +     K D  +D+ 
Sbjct: 302 ANSCKYLVENPAIAAEIEKKLRDL--LLTPVTEGDQVDENKADIKEDEA 348


>gi|317497517|ref|ZP_07955836.1| recA bacterial DNA recombination protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895200|gb|EFV17363.1| recA bacterial DNA recombination protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 351

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 209/357 (58%), Positives = 278/357 (77%), Gaps = 6/357 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K KAL+AAL +I++ YGKG++M+LG   +    IEV  +GS+ LDIALG+GG PK
Sbjct: 1   MKQEEKLKALDAALVKIEKDYGKGSVMKLGEYQADRT-IEVTPTGSISLDIALGVGGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YA+ +GVD+ NL ISQ
Sbjct: 60  GRIIEIYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQ LEIT+ +VRSGA+DII++DSVAAL P+AEI+GDMG+S  G+QARLMSQALRKL
Sbjct: 120 PDTGEQGLEITETMVRSGAIDIIIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T  +S+  C ++FINQ+R K+GVMFG+PETTTGG ALKFYSS+RLD+RR  ++K    + 
Sbjct: 180 TGVVSKFNCTVIFINQLREKVGVMFGNPETTTGGRALKFYSSIRLDVRRTETLKQAGEMI 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR+KVVKNK+A PFKQ EFDIM+G+GIS +G+++DL   A I+ KSGAW+++ G+++
Sbjct: 240 GNRTRIKVVKNKVAPPFKQAEFDIMFGKGISKYGDILDLAADADIIHKSGAWYAYNGEKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           GQGRENSK +L ++ +IAE +E  +R + GL     L+E A N  +D   +   + E
Sbjct: 300 GQGRENSKKYLEDHPDIAETVEHAIRVHYGL-----LEEDAENANNDPKAETQVSEE 351


>gi|301165521|emb|CBW25092.1| recombinase A [Bacteriovorax marinus SJ]
          Length = 374

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 222/354 (62%), Positives = 285/354 (80%), Gaps = 4/354 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K+KAL+ AL+ I++ +GKGAIM+L       E +  +S+G LGLD+ALG+GG P+GRI
Sbjct: 12  ANKTKALDLALATIEKQFGKGAIMKL-DSEKKLEKVPAISTGCLGLDLALGVGGIPQGRI 70

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +E+YGPESSGKTTL LH  A+ QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+
Sbjct: 71  IEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEHALDTYYAEKLGVDVPNTLISQPDS 130

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGAVD++++DSVAALTPRAE+EGDMG+S  G+QARLMSQALRKLT S
Sbjct: 131 GEQALEIADMLVRSGAVDLLIVDSVAALTPRAELEGDMGDSHMGLQARLMSQALRKLTGS 190

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ISRS   ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIRR+G+IK+ D + G++
Sbjct: 191 ISRSNTTVIFINQLRMKIGVMFGNPETTTGGNALKFYASVRVDIRRIGAIKNGDEVVGSR 250

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVK+VKNK+A PFKQ+EFDIMYGEGIS  G+++DL V+  +V+K+GAWFS+   ++GQG
Sbjct: 251 TRVKIVKNKVAPPFKQIEFDIMYGEGISKTGDVLDLAVEHGVVEKAGAWFSYNNAKIGQG 310

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           RENSK FL EN +I E I + +    GL+    L+E A++ +     ++T  VE
Sbjct: 311 RENSKNFLSENKDIFEEIRNKVLAKNGLIT---LEEEAVDKETGEIIEETAPVE 361


>gi|272894042|gb|ACZ96547.1| RecA [Burkholderia contaminans]
          Length = 348

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 232/348 (66%), Positives = 292/348 (83%), Gaps = 3/348 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 2   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 121 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 241 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           G++N++ FLREN EIA  IE+ +R++ G+V   +    A +  +  D+
Sbjct: 301 GKDNAREFLRENPEIAREIENRIRESLGVVT--MPDGAAQDEAEAMDE 346


>gi|254575568|gb|ACT68298.1| RecA [Burkholderia cepacia]
          Length = 347

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 230/331 (69%), Positives = 287/331 (86%), Gaps = 1/331 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 120 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 180 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 240 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           G++N++ FLREN EIA  IE+ +R++ G+ A
Sbjct: 300 GKDNAREFLRENPEIAREIENRIRESLGVAA 330


>gi|132242|sp|P26348|RECA_VIBAN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|155257|gb|AAA27554.1| DNA repair protein [Listonella anguillarum]
          Length = 348

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 210/346 (60%), Positives = 277/346 (80%), Gaps = 2/346 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTLTLELIAAAQRVGKTCAFIDAEHALDPIYAKKLGVNIDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D+IVIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAIDVIVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D   GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEAVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ +  I+YG+G +  GEL+DLGVK  +V+K+GAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKQADTQILYGQGFNREGELVDLGVKHKLVEKAGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
            N+  FLREN   A  +++ LR+     A+ +++EP ++     ++
Sbjct: 302 ANACKFLRENPAAAMALDTKLREMLLNPAELIVEEPILSEMPQEEE 347


>gi|156932777|ref|YP_001436693.1| recombinase A [Cronobacter sakazakii ATCC BAA-894]
 gi|166220644|sp|A7MJ38|RECA_ENTS8 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|156531031|gb|ABU75857.1| hypothetical protein ESA_00567 [Cronobacter sakazakii ATCC BAA-894]
          Length = 354

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 213/353 (60%), Positives = 280/353 (79%), Gaps = 5/353 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQRAGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD++V+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVLVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ + + G++T
Sbjct: 184 KNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGEEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINFYGELVDLGVKHKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N+  FL+EN  +A+ IE  LR    ++ ++    P     D+    +  N E
Sbjct: 304 ANATNFLKENKPMADEIEKKLRD---MLLNNQDSTPDFTVDDNDGGVEETNEE 353


>gi|1785950|gb|AAB41053.1| RecA [Aeromonas salmonicida]
          Length = 353

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 220/353 (62%), Positives = 276/353 (78%), Gaps = 3/353 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM LG   ++   IE +S+GSL LD+ALGIGG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMLLGDSKTM--DIEAISTGSLSLDVALGIGGLPCGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G  CAF+DAEHALD IYA KLGV++ +LLISQ DTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAEAQKKGKVCAFIDAEHALDPIYAAKLGVNVDDLLISQSDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS AVD+I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 122 EQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+ +FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+T
Sbjct: 182 KNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF I YG GIS  GEL+DLGVK  ++DK+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKVAPPFKQAEFQIFYGVGISKEGELVDLGVKHKLIDKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N      EN  +A  +E+ LR+   L  D   ++P +   D+ + +     E
Sbjct: 302 ANVMKLFTENKVMAAEVEARLRELL-LSGDVPAEKPVVADADELEAESEQEFE 353


>gi|158521280|ref|YP_001529150.1| recA protein [Desulfococcus oleovorans Hxd3]
 gi|158510106|gb|ABW67073.1| recA protein [Desulfococcus oleovorans Hxd3]
          Length = 358

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 207/338 (61%), Positives = 271/338 (80%), Gaps = 2/338 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+  +K+KA+E+A++QI+R +GKGAIM+LG+   I   +  +S+GS+ LD+ALG+GG P+
Sbjct: 1   MSNAEKTKAVESAITQIERQFGKGAIMKLGTGTVI--NVPSISTGSIALDVALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+ EIYG ESSGKTT+ALHT+A++QK GG  AF+DAEHALD+ YA+KLGV+   LL+SQ
Sbjct: 59  GRVTEIYGQESSGKTTIALHTVAEAQKKGGIAAFIDAEHALDTAYAKKLGVNTDELLVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI DMLVRSGA+DI+VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL
Sbjct: 119 PDTGEQALEIADMLVRSGAIDILVIDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T  I ++   ++FINQ+R KIGV FG+PETT GGNALKFY+SVRLDIRR  +IKD   + 
Sbjct: 179 TGVIGKTNTSIIFINQIREKIGVFFGNPETTPGGNALKFYASVRLDIRRSAAIKDGQEVV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ RVKVVKNK+A PFK VEFD+MYGEGIS  GEL+D+GV+ +I++KSG+W+S+ G+R+
Sbjct: 239 GNRVRVKVVKNKIAPPFKTVEFDMMYGEGISKTGELLDIGVENNIIEKSGSWYSYNGERI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
           GQGREN K F  +  E+   + + +R++ GL       
Sbjct: 299 GQGRENVKQFFADKPEVFNELYAKVRESVGLAGGQPAA 336


>gi|29654363|ref|NP_820055.1| recombinase A [Coxiella burnetii RSA 493]
 gi|154707523|ref|YP_001424368.1| recombinase A [Coxiella burnetii Dugway 5J108-111]
 gi|161830332|ref|YP_001596675.1| recombinase A [Coxiella burnetii RSA 331]
 gi|165918533|ref|ZP_02218619.1| protein RecA [Coxiella burnetii RSA 334]
 gi|212212529|ref|YP_002303465.1| recombinase A [Coxiella burnetii CbuG_Q212]
 gi|37537929|sp|Q83CQ4|RECA_COXBU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|29541630|gb|AAO90569.1| RecA [Coxiella burnetii RSA 493]
 gi|154356809|gb|ABS78271.1| RecA [Coxiella burnetii Dugway 5J108-111]
 gi|161762199|gb|ABX77841.1| protein RecA [Coxiella burnetii RSA 331]
 gi|165917779|gb|EDR36383.1| protein RecA [Coxiella burnetii RSA 334]
 gi|212010939|gb|ACJ18320.1| RecA [Coxiella burnetii CbuG_Q212]
          Length = 343

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 229/344 (66%), Positives = 285/344 (82%), Gaps = 1/344 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + ++S AL AALSQI+R +GKG++M+LG  G +   I+V+S+GSLGLDIALG+GG P+GR
Sbjct: 1   MDNRSNALNAALSQIERQFGKGSVMRLGDPG-LIPDIDVISTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPE+SGKTTLAL TIA  Q+ GGT AFVDAEHALD+IYA KLGV +++LL+SQPD
Sbjct: 60  IIEIYGPEASGKTTLALQTIASCQRMGGTAAFVDAEHALDAIYAGKLGVKVEDLLVSQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITDMLVRSGAVD+IVIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT+
Sbjct: 120 TGEQALEITDMLVRSGAVDLIVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTA 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I +S  +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK  + I G+
Sbjct: 180 NIKKSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKKGEEILGS 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PF+QVEFDI+YG GIS   ELIDLGVK  +V+K+GAW+S+ G+R+GQ
Sbjct: 240 ETRVKVVKNKVAPPFRQVEFDILYGLGISRESELIDLGVKNELVEKAGAWYSYNGERIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           G+EN + F  EN +IA  IE+ LR+              +N  +
Sbjct: 300 GKENVRQFFLENPKIAGEIETRLREKLLPHRQGEKIAEEVNAAE 343


>gi|242133658|gb|ACS87940.1| RecA [Burkholderia cepacia]
          Length = 346

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 231/350 (66%), Positives = 294/350 (84%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  I + QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVITELQKIGGTAAFIDAEHALDIQYASKLGVNVPELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 120 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 180 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 240 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ G+V+   + +   N  +  D+++
Sbjct: 300 GKDNAREFLRENPEIAREIENRIRESLGVVS---MPDGVANEAEAMDEEE 346


>gi|229828465|ref|ZP_04454534.1| hypothetical protein GCWU000342_00527 [Shuttleworthia satelles DSM
           14600]
 gi|229793059|gb|EEP29173.1| hypothetical protein GCWU000342_00527 [Shuttleworthia satelles DSM
           14600]
          Length = 376

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 207/331 (62%), Positives = 270/331 (81%), Gaps = 1/331 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           +     +K KALEAA++ I++ YG+G++M+LG  GS    +E VS+GS+ LD+ALG+GG 
Sbjct: 33  EAKTAEEKQKALEAAITHIEKQYGRGSVMKLGE-GSQRMKVEAVSTGSISLDLALGVGGL 91

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EI+GPESSGKTT+ALH +++ QK GG   F+DAEHALD +YAR +GVD+ NL I
Sbjct: 92  PKGRIIEIFGPESSGKTTVALHCVSEVQKRGGIAGFIDAEHALDPVYARNIGVDIDNLYI 151

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI + +VRSGAVDIIV+DSVAAL P+AEIEGDMG+S  G+QARLMSQALR
Sbjct: 152 SQPDNGEQALEIAETMVRSGAVDIIVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALR 211

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLTS +SR+ CI++FINQ+R KIGVMFG+PETTTGG ALKFY+SVRLD+RR  +IK    
Sbjct: 212 KLTSVVSRTNCIVIFINQLREKIGVMFGNPETTTGGRALKFYASVRLDVRRTEAIKQGGD 271

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + GN TRVK+VKNK+A PFKQ EFDIM+G+GIS  G+++DL V   I++KSGAW++++G+
Sbjct: 272 VVGNHTRVKIVKNKVAPPFKQAEFDIMFGQGISRSGDILDLAVDIDIINKSGAWYAYEGE 331

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNA 335
           ++GQGREN+K +L E+ E+ E IE L+R + 
Sbjct: 332 KIGQGRENAKKYLEEHPELMERIEQLIRDHY 362


>gi|10121174|gb|AAG13099.1|AF143784_1 RecA [Burkholderia cepacia]
          Length = 347

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 232/350 (66%), Positives = 295/350 (84%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 2   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 121 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 241 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ G+V+   + +   N  +  D+++
Sbjct: 301 GKDNAREFLRENPEIAREIENRIRESLGVVS---MPDGVANEAEAMDEEE 347


>gi|86160380|ref|YP_467165.1| RecA protein [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776891|gb|ABC83728.1| RecA protein [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 358

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 219/351 (62%), Positives = 284/351 (80%), Gaps = 6/351 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KA+E A++ I++ +GKG+IM+LG++ ++ + ++ VS+G++ LDIALG+GGFP+GRI
Sbjct: 5   PEKEKAIELAVASIEKAFGKGSIMRLGNEDALVKDVQAVSTGAISLDIALGVGGFPRGRI 64

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALH IA++Q+ GG  AFVDAEHALD  YARKLGV   +LLISQPD+
Sbjct: 65  IEIYGPESSGKTTLALHAIAEAQRRGGIAAFVDAEHALDVGYARKLGVRTDDLLISQPDS 124

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + LVRSGA+D++V+DSVAAL P+AE+EG+MG++  G+QARLMSQALRKLT +
Sbjct: 125 GEQALEIVETLVRSGAIDVLVVDSVAALVPKAELEGEMGDAHMGVQARLMSQALRKLTGT 184

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S  I++FINQ+RMKIGVMFG+PETTTGGNALKFY+S RLDIRR+G+IKD DS+ GN+
Sbjct: 185 ISKSSTIVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIGAIKDGDSVIGNR 244

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFK+VEFDIMYG GIS  G+++DL     IV+KSG WFSF G+R+GQG
Sbjct: 245 TRVKVVKNKVAPPFKEVEFDIMYGHGISREGDVLDLASNEGIVEKSGTWFSFGGERIGQG 304

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL------VADSLLQEPAINTKDDA 354
           RE +K F RE+ EI + +E+ L +  G+      V     +EPA   K  A
Sbjct: 305 REQTKAFFREHPEILQQVEARLFEKFGIHRGPVAVPSPPAEEPAEERKPRA 355


>gi|10121196|gb|AAG13110.1|AF143795_1 RecA [Burkholderia cepacia]
 gi|10121198|gb|AAG13111.1|AF143796_1 RecA [Burkholderia cepacia]
          Length = 350

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 229/331 (69%), Positives = 287/331 (86%), Gaps = 1/331 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 2   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 121 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 241 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           G++N++ FLREN EIA  IE+ +R++ G+V 
Sbjct: 301 GKDNAREFLRENPEIAREIENRIRESLGVVT 331


>gi|10121190|gb|AAG13107.1|AF143792_1 RecA [Burkholderia vietnamiensis]
          Length = 347

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 231/331 (69%), Positives = 287/331 (86%), Gaps = 1/331 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI + +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 2   TAEKSKALAAALAQIDKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 121 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 241 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           G++N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 301 GKDNAREFLRENPEIAREIENRIRESLGVVA 331


>gi|301064408|ref|ZP_07204833.1| RecA protein [delta proteobacterium NaphS2]
 gi|300441490|gb|EFK05830.1| RecA protein [delta proteobacterium NaphS2]
          Length = 346

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 213/347 (61%), Positives = 278/347 (80%), Gaps = 2/347 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +D+ +A++ A+SQI++ +G+G+IM+LG   SI   +  +S+GSL LD+ALG+GG P+GR+
Sbjct: 1   MDRERAVDQAISQIEKQFGRGSIMKLGEDKSI--DVPAISTGSLALDLALGVGGVPRGRV 58

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VE+YGPESSGKTTLALH  A++Q  GG  AFVDAEHALD +YARKLGVD+ NLL+SQPDT
Sbjct: 59  VEVYGPESSGKTTLALHIAAEAQAKGGMVAFVDAEHALDVVYARKLGVDVDNLLVSQPDT 118

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQAL+I ++LVRSG +D+++IDSVAAL PRAEIEG+MG+   G+QARLMSQALRKLT +
Sbjct: 119 GEQALDIAEILVRSGGIDVLIIDSVAALVPRAEIEGEMGDHHVGLQARLMSQALRKLTGT 178

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S+  L+FINQ+RMKIGVMFG+PETTTGGNALKFY+S RLDIRR+G++K+ D + G++
Sbjct: 179 ISKSRTCLIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIGALKEGDQVVGSR 238

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFK  EFDI+YGEGIS  G+++DLGV   IV+KSGAW+SF G R+GQG
Sbjct: 239 TRVKVVKNKVAPPFKSAEFDIVYGEGISKEGDILDLGVSLDIVEKSGAWYSFDGDRIGQG 298

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           R+N K FL EN +I + I   + +  GL  D  + +        A+K
Sbjct: 299 RQNVKRFLAENTDIRDKIADQVLRQTGLRKDPKMDDEKAEAPTQAEK 345


>gi|10121172|gb|AAG13098.1|AF143783_1 RecA [Burkholderia cepacia]
 gi|10121176|gb|AAG13100.1|AF143785_1 RecA [Burkholderia cepacia]
 gi|10121200|gb|AAG13112.1|AF143797_1 RecA [Burkholderia cepacia]
          Length = 347

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 232/350 (66%), Positives = 295/350 (84%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 2   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 121 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 241 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ G+V+   + +   N  +  D+++
Sbjct: 301 GKDNAREFLRENPEIAREIENRIRESLGVVS---MPDGVANEAEAMDEEE 347


>gi|227590|prf||1707271C recA gene
          Length = 355

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 216/352 (61%), Positives = 280/352 (79%), Gaps = 4/352 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P+GRIV
Sbjct: 5   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--NVETISTGSLYLDVALGAGGLPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPES GKTTL L  IA +Q+ G  CAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 63  EIYGPESYGKTTLTLQVIAAAQREGKICAFIDAEHALDPIYAQKLGVDIDNLLCSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 123 EQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEIGDSHVGLAARMMSQAMRKLAGNL 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GS+K+ D + G++T
Sbjct: 183 KNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKNGDEVVGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+ FGELIDLGVK  +V+K+GAW+S+ G+++GQG+
Sbjct: 243 RVKVVKNKIAAPFKQAEFQIMYGEGINTFGELIDLGVKHKLVEKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ--EPAINTKDDADKDDTD 360
            N+  +L+EN E+   + + LR+     A       + A ++ D AD ++T+
Sbjct: 303 ANATTYLKENPEMYNELNTKLREMLLNHAGEFTSARDFANDSDDAADIEETE 354


>gi|317506454|ref|ZP_07964255.1| recA bacterial DNA recombination protein [Segniliparus rugosus ATCC
           BAA-974]
 gi|316255215|gb|EFV14484.1| recA bacterial DNA recombination protein [Segniliparus rugosus ATCC
           BAA-974]
          Length = 346

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 202/327 (61%), Positives = 262/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D++KALE A++QI + +GKG++M+LG +    E I V+ +GS+ LD+ALGIGG PKGR++
Sbjct: 6   DRNKALELAMAQIDKSFGKGSVMRLGEKA--VEPIAVIPTGSIALDVALGIGGLPKGRVI 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGV+ +NLL+SQPDTG
Sbjct: 64  EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVNTENLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 124 EQALEIADMLIRSGALDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + S    +FINQ+R KIGVMFG  ETTTGG ALKFY+SVRLD+RR+ ++KD      N+T
Sbjct: 184 NNSGTTAIFINQLREKIGVMFGPSETTTGGKALKFYASVRLDVRRIETLKDGTEAVANRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFKQ EFDI+YG GIS  G +IDLGV+  ++ KSGAW+++  ++LGQG+
Sbjct: 244 RVKIVKNKVAPPFKQAEFDIIYGAGISREGSIIDLGVEHGLIRKSGAWYTYGDEQLGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN++ FL  N + A+ IE LLR    +
Sbjct: 304 ENARKFLIANPDKADEIEMLLRDKLQI 330


>gi|254514870|ref|ZP_05126931.1| protein RecA [gamma proteobacterium NOR5-3]
 gi|219677113|gb|EED33478.1| protein RecA [gamma proteobacterium NOR5-3]
          Length = 366

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 218/327 (66%), Positives = 269/327 (82%), Gaps = 2/327 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +K KALEAALSQI R +GKG +M++G    I   I  +S+GSLGLD+ALGIGG PKGR
Sbjct: 2   NANKEKALEAALSQIDRQFGKGTVMRMGDNDRI--AIPAISTGSLGLDVALGIGGLPKGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I EI+GPESSGKTTL L  IA++QK GGT AF+DAEHALD IYA KLGV + +L++SQPD
Sbjct: 60  ICEIFGPESSGKTTLTLQVIAEAQKAGGTAAFIDAEHALDPIYAEKLGVKIDDLIVSQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALE+T+MLVRSGAVD++VIDSVAALTPRAEIEGDMG+S  G+QARL+SQA+RKLT+
Sbjct: 120 TGEQALEVTEMLVRSGAVDVLVIDSVAALTPRAEIEGDMGDSHVGLQARLLSQAMRKLTA 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++K+ D + GN
Sbjct: 180 TIKQTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKEGDEVVGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFKQ EF IMYG GI    E+ID GVK  +VDKSGAW+++KG ++GQ
Sbjct: 240 ETRVKVVKNKVAPPFKQAEFQIMYGRGIYRTAEVIDWGVKLGLVDKSGAWYAYKGDKIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNA 335
           G+ N+  FL +N  +   IE L+R   
Sbjct: 300 GKANAAKFLEDNPALGSEIEGLIRSQL 326


>gi|206577023|ref|YP_002236965.1| protein RecA [Klebsiella pneumoniae 342]
 gi|288933922|ref|YP_003437981.1| recA protein [Klebsiella variicola At-22]
 gi|290510999|ref|ZP_06550368.1| RecA protein [Klebsiella sp. 1_1_55]
 gi|226723632|sp|B5XVB6|RECA_KLEP3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|206566081|gb|ACI07857.1| protein RecA [Klebsiella pneumoniae 342]
 gi|288888651|gb|ADC56969.1| recA protein [Klebsiella variicola At-22]
 gi|289775992|gb|EFD83991.1| RecA protein [Klebsiella sp. 1_1_55]
          Length = 352

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 215/350 (61%), Positives = 281/350 (80%), Gaps = 4/350 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+FFGEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFFGELVDLGVKEKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
            N+  +L+EN   A+ IE  +R+   L+ +           +DA++ + D
Sbjct: 304 ANAITWLKENPAAAKEIEKKVREL--LLNNQDSTPDFAVDGNDAEETEQD 351


>gi|116119164|gb|ABJ74752.1| RecA [Burkholderia sp. M317]
          Length = 347

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 231/350 (66%), Positives = 294/350 (84%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GS GLDIALG+GG P+GR
Sbjct: 2   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSPGLDIALGVGGLPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 121 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 241 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ G+V+   + +   N  +  D+++
Sbjct: 301 GKDNAREFLRENPEIAREIENRIRESLGVVS---MPDGVANEAEAMDEEE 347


>gi|315303074|ref|ZP_07873776.1| protein RecA [Listeria ivanovii FSL F6-596]
 gi|38258435|sp|Q83TH2|RECA_LISIV RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|30265993|gb|AAN15812.1| RecA [Listeria ivanovii]
 gi|30265995|gb|AAN15813.1| RecA [Listeria ivanovii]
 gi|313628555|gb|EFR96986.1| protein RecA [Listeria ivanovii FSL F6-596]
          Length = 348

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 199/344 (57%), Positives = 269/344 (78%), Gaps = 4/344 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GR
Sbjct: 1   MNDRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPD
Sbjct: 59  IIEVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR   +K    + GN
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK+A PF+  E DIMYGEGIS  GEL+D+  +  +++KSG+W+S+K +R+GQ
Sbjct: 239 KTKIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GREN+K +L+E+ +I + I   +R+   +  D   +EP   T++
Sbjct: 299 GRENAKQYLKEHTDIRDEISKRVREEYEI--DGSNKEPLAETEE 340


>gi|238791371|ref|ZP_04635010.1| hypothetical protein yinte0001_31280 [Yersinia intermedia ATCC
           29909]
 gi|238729504|gb|EEQ21019.1| hypothetical protein yinte0001_31280 [Yersinia intermedia ATCC
           29909]
          Length = 354

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 209/350 (59%), Positives = 273/350 (78%), Gaps = 2/350 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGDVVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
            N+  +L+EN  +A  ++  LR+      +           D+ D+   +
Sbjct: 304 ANASNYLKENPAVAAELDKKLREMLLNGGNGEQPVATAAFADETDETSEE 353


>gi|304570555|ref|YP_266064.2| recA protein [Candidatus Pelagibacter ubique HTCC1062]
          Length = 383

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 225/359 (62%), Positives = 293/359 (81%), Gaps = 2/359 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           ++    +K+KAL+AA+SQI   +GKG++M+LG + ++   +E +S+GSL LD+ALGIGG 
Sbjct: 15  QQSEGNEKNKALDAAMSQIIDNFGKGSVMKLGQRRAM--DVESISTGSLSLDVALGIGGL 72

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGR++E+YGPESSGKTTLAL  +A++QK GG CAF+DAEHALD IYA+KLGVD + LLI
Sbjct: 73  PKGRVIEVYGPESSGKTTLALQVLAEAQKAGGICAFIDAEHALDPIYAKKLGVDTEELLI 132

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D LV+SG++ +IVIDSVAALTPRAEIEG+MG+   G+Q+RLMSQALR
Sbjct: 133 SQPDTGEQALEIADTLVKSGSISVIVIDSVAALTPRAEIEGEMGDHHVGLQSRLMSQALR 192

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT SIS +  +++FINQ+RMKIGVMFGSPETT+GGNALKFYSSVR+DIRR+G+IK+ D 
Sbjct: 193 KLTGSISSTNTMMIFINQIRMKIGVMFGSPETTSGGNALKFYSSVRMDIRRIGAIKNGDE 252

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           I GN TRVKVVKNK+A PFK VEFD+MYG+GIS  GEL+DLG KA IV+K+GAW+++KG+
Sbjct: 253 IIGNSTRVKVVKNKVAPPFKVVEFDLMYGKGISKVGELVDLGSKADIVEKAGAWYAYKGE 312

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           ++GQGREN+K +L +N +IA  IE  +R+ AG++A  +   P    K   D+ +   +E
Sbjct: 313 KIGQGRENAKTYLEQNPKIAAEIEMAIREKAGVIAKKIEGNPLDPEKAAKDQIEEPKLE 371


>gi|238753057|ref|ZP_04614512.1| hypothetical protein yrohd0001_38490 [Yersinia rohdei ATCC 43380]
 gi|238708735|gb|EEQ00998.1| hypothetical protein yrohd0001_38490 [Yersinia rohdei ATCC 43380]
          Length = 354

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 213/353 (60%), Positives = 280/353 (79%), Gaps = 5/353 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGDVVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N+  +L+EN  +A  ++  LR+   ++ +    E  + T   AD++D  + E
Sbjct: 304 ANASNYLKENPAVAAELDKKLRE---MLLNGGNGEQPVATAVLADEEDETSEE 353


>gi|261253949|ref|ZP_05946522.1| RecA protein [Vibrio orientalis CIP 102891]
 gi|260937340|gb|EEX93329.1| RecA protein [Vibrio orientalis CIP 102891]
          Length = 348

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 218/353 (61%), Positives = 278/353 (78%), Gaps = 10/353 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAIDVMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKQAETQILYGQGFNREGELIDLGVKHKLIEKAGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N+  FLREN E A+ I++ LR+        +L  PA    DDA+       E
Sbjct: 302 ANAGKFLRENTEAAKTIDAKLRE--------MLLSPAEVQPDDAELGQMPEQE 346


>gi|261416758|ref|YP_003250441.1| recA protein [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261373214|gb|ACX75959.1| recA protein [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302326741|gb|ADL25942.1| RecA protein [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 367

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 209/355 (58%), Positives = 283/355 (79%), Gaps = 3/355 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K+KA+EAA++QI++ YGKG+IM LG Q    E I V+ +G + LD+ALG+GGFP+GRI
Sbjct: 14  SEKAKAVEAAIAQIEKNYGKGSIMALGQQP--VEDIPVIPTGCIQLDMALGVGGFPRGRI 71

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALH IA++QK GG  AF+DAEHA D++YARKLGVD+++LL+SQPDT
Sbjct: 72  IEIYGPESSGKTTLALHAIAEAQKLGGVAAFIDAEHAFDAVYARKLGVDIESLLVSQPDT 131

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQAL+I + LVRSGA+DIIV+DSVAAL P+AEI G+MG++  G+QARLMSQALRKLT  
Sbjct: 132 GEQALDIAETLVRSGAIDIIVVDSVAALVPQAEINGEMGDNHVGLQARLMSQALRKLTGI 191

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +S+S   ++FINQ+RMKIGVMFG+PETTTGGNALKFY++ R+DIRR+ +IK+ + + GN+
Sbjct: 192 LSKSNTCMLFINQLRMKIGVMFGNPETTTGGNALKFYATQRIDIRRIAAIKNGEEVIGNR 251

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVK+VKNK+A+PF Q EFDI+YG GIS    ++DL  +  I+ KSG+WFS+  +R+GQG
Sbjct: 252 TRVKIVKNKVAAPFTQCEFDILYGVGISREASILDLACELDIIQKSGSWFSYNNERIGQG 311

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVAD-SLLQEPAINTKDDADKDDTDNVE 363
           REN+++FL++N E+   IE  +R++   V    L +  A++  DD D + +   E
Sbjct: 312 RENTRLFLKDNAELCSEIEQKIRESMKDVELFKLGENDAVDLGDDGDGEASIQEE 366


>gi|212715625|ref|ZP_03323753.1| hypothetical protein BIFCAT_00524 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660992|gb|EEB21567.1| hypothetical protein BIFCAT_00524 [Bifidobacterium catenulatum DSM
           16992]
          Length = 394

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 210/361 (58%), Positives = 279/361 (77%), Gaps = 10/361 (2%)

Query: 4   RKEMNIVD--KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
            K  N +D  +  AL+ AL+Q+++ +GKG+ M+LG +    + +EV+ +GSL LD+ALGI
Sbjct: 13  NKSANGIDPRRQAALDTALAQVEKSFGKGSAMRLGDRPE--QDVEVIPTGSLALDMALGI 70

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG PKGRIVEIYGPESSGKTTLALH +A +QK+GG  AF+DAEHALD +YARKLGVD  +
Sbjct: 71  GGLPKGRIVEIYGPESSGKTTLALHVVANAQKSGGVAAFIDAEHALDPVYARKLGVDTDS 130

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQ
Sbjct: 131 LIVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQ 190

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRK+T +++++    +FINQ+R KIGV FG+PETTTGG ALKFYSSVR+DIRR+ +IK+
Sbjct: 191 ALRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYSSVRMDIRRIQTIKN 250

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            D   GN+T+VKVVKNKMA PFK  EFD++YGEGIS  G ++D+ ++ ++V KSG+WF++
Sbjct: 251 GDEAVGNRTKVKVVKNKMAPPFKTAEFDVLYGEGISKEGSVLDMALQVNVVKKSGSWFTY 310

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
            G +LGQGREN + FL++N E+ E IE+ ++   GL+      EP     +D D     +
Sbjct: 311 DGDQLGQGRENVRQFLKDNPELTEEIENKVKAEFGLI------EPTDQFAEDGDDVSAKD 364

Query: 362 V 362
           V
Sbjct: 365 V 365


>gi|260448251|gb|ACX38673.1| recA protein [Escherichia coli DH1]
 gi|315137306|dbj|BAJ44465.1| RecA protein [Escherichia coli DH1]
          Length = 353

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 212/348 (60%), Positives = 282/348 (81%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++ +S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIDDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            N+  +L++N E A+ IE  +R+      +S       +++  A+ ++
Sbjct: 304 ANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVAETNE 351


>gi|238786912|ref|ZP_04630713.1| hypothetical protein yfred0001_18870 [Yersinia frederiksenii ATCC
           33641]
 gi|238725280|gb|EEQ16919.1| hypothetical protein yfred0001_18870 [Yersinia frederiksenii ATCC
           33641]
          Length = 369

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 213/353 (60%), Positives = 280/353 (79%), Gaps = 5/353 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 21  NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 78

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 79  EIYGPESSGKTTLTLQVIAAAQRAGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 138

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 139 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 198

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D + G++T
Sbjct: 199 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDVVVGSET 258

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 259 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 318

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N+  +L+EN  +A  ++  LR+   ++ +    E A+ T   AD+ D  + E
Sbjct: 319 ANASNYLKENPAVAAELDKKLRE---MLLNGGNGEQAVTTAAFADETDETSEE 368


>gi|188588142|ref|YP_001920632.1| recombinase A [Clostridium botulinum E3 str. Alaska E43]
 gi|238689703|sp|B2V4I3|RECA_CLOBA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|188498423|gb|ACD51559.1| protein RecA [Clostridium botulinum E3 str. Alaska E43]
          Length = 356

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 217/352 (61%), Positives = 280/352 (79%), Gaps = 3/352 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           ++K KA+E A+ QI++ +GKG++M+LG    +   I+ +S+G L LDIALGIGG PKGRI
Sbjct: 6   INKLKAIENAMGQIEKQFGKGSVMKLGEDSVL--NIDAISTGCLDLDIALGIGGVPKGRI 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH  A++QK GG   F+DAEHALD  YAR LGVD +NL++SQPDT
Sbjct: 64  VEIYGPESSGKTTIALHIAAEAQKKGGAVGFIDAEHALDPSYARNLGVDTENLIVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQ LEI + LVRSGA+D+I++DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL  +
Sbjct: 124 GEQGLEIAEALVRSGAIDVIIVDSVAALVPKAEIEGEMGDSHIGLQARLMSQALRKLAGT 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS++ CI +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLD+RR+ SIK  D I GN+
Sbjct: 184 ISKTNCIAIFINQLREKVGVMFGSPETTTGGRALKFYASVRLDVRRIDSIKQGDGIVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TR+KV KNK+A PFKQ EFDIMY EGIS  G ++D+GVK  IV KSGAWFS+   RLGQG
Sbjct: 244 TRIKVTKNKVAPPFKQAEFDIMYNEGISREGNIVDVGVKEEIVQKSGAWFSYGDIRLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL-VADSLLQEPAINTKDDADKDDTD 360
           REN+K +L+EN E+A +IE+ +R+   L + D++++E +   K   +K+ +D
Sbjct: 304 RENAKQYLKENPEVALDIENQIREKHNLPLMDAVIKETSQEVKGKENKEQSD 355


>gi|254575566|gb|ACT68297.1| RecA [Burkholderia cepacia]
          Length = 346

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 233/350 (66%), Positives = 295/350 (84%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 120 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PET TGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 180 TIKRTNCLVIFINQIRMKIGVMFGNPETMTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 240 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ G+VA   + + A N  +  D+++
Sbjct: 300 GKDNAREFLRENPEIAREIENRIRESLGVVA---MPDGAGNEAEAMDEEE 346


>gi|118594481|ref|ZP_01551828.1| recombinase A [Methylophilales bacterium HTCC2181]
 gi|118440259|gb|EAV46886.1| recombinase A [Methylophilales bacterium HTCC2181]
          Length = 348

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 225/348 (64%), Positives = 293/348 (84%), Gaps = 3/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AALSQI + +GKG+IM++     + EGI+ VS+GSLGLDIALGIGG P+GR++
Sbjct: 4   NKRKALDAALSQIDKQFGKGSIMRM-DDSQVIEGIQAVSTGSLGLDIALGIGGLPRGRVI 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKT+L+L T+AQ QKTGGT AF+DAEHALD  YA KLGV+++ LL+SQPDTG
Sbjct: 63  EIYGPESSGKTSLSLSTVAQLQKTGGTAAFIDAEHALDIQYAAKLGVNIEELLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VDI+VIDSVAALTPRAEIEGDMG+S  G+QARLMSQALRKLTS+I
Sbjct: 123 EQALEIADMLVRSGSVDIVVIDSVAALTPRAEIEGDMGDSHMGLQARLMSQALRKLTSNI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK  D + G +T
Sbjct: 183 KKTNTMVIFINQLRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKKGDEVIGAET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++ EFD++YGEGIS  GE+ID GV   IV+KSG+W+S+KG+++GQG+
Sbjct: 243 RVKVVKNKVAPPFRKAEFDVLYGEGISLEGEIIDQGVLLDIVEKSGSWYSYKGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           +N++IFL++N +I+  IE L+R N+ + A+  ++   I  +D+    +
Sbjct: 303 DNARIFLKDNPKISNEIEQLVRDNSSITAE--IKAAVIPDEDEPSPAE 348


>gi|209967937|gb|ACB38234.2| RecA [Burkholderia cepacia]
          Length = 346

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 232/350 (66%), Positives = 295/350 (84%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 120 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 180 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 240 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ G+V+   + +   N  +  D+++
Sbjct: 300 GKDNAREFLRENPEIAREIENRIRESLGVVS---MPDGLANEAEAMDEEE 346


>gi|91762224|ref|ZP_01264189.1| recA protein [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718026|gb|EAS84676.1| recA protein [Candidatus Pelagibacter ubique HTCC1002]
          Length = 383

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 226/359 (62%), Positives = 294/359 (81%), Gaps = 2/359 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           ++    +K+KAL+AA+SQI   +GKG++M+LG + ++   +E +S+GSL LD+ALGIGG 
Sbjct: 15  QQSEGNEKNKALDAAMSQIIDNFGKGSVMKLGQRRAM--DVESISTGSLSLDVALGIGGL 72

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGR++E+YGPESSGKTTLAL  +A++QK GG CAF+DAEHALD IYA+KLGVD + LLI
Sbjct: 73  PKGRVIEVYGPESSGKTTLALQVLAEAQKAGGICAFIDAEHALDPIYAKKLGVDTEELLI 132

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D LV+SG++ +IVIDSVAALTPRAEIEG+MG+   G+Q+RLMSQALR
Sbjct: 133 SQPDTGEQALEIADTLVKSGSISVIVIDSVAALTPRAEIEGEMGDHHVGLQSRLMSQALR 192

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT SIS +  +++FINQ+RMKIGVMFGSPETT+GGNALKFYSSVR+DIRR+G+IK+ D 
Sbjct: 193 KLTGSISSTNTMMIFINQIRMKIGVMFGSPETTSGGNALKFYSSVRMDIRRIGAIKNGDE 252

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           I GN TRVKVVKNK+A PFK VEFD+MYG+GIS  GEL+DLG KA IV+K+GAW+++KG+
Sbjct: 253 IIGNSTRVKVVKNKVAPPFKVVEFDLMYGKGISKVGELVDLGAKADIVEKAGAWYAYKGE 312

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           ++GQGREN+KI+L +N +IA  IE  +R+ AG++A  +   P    K   D+ +   +E
Sbjct: 313 KIGQGRENAKIYLEQNPQIAAEIEMAIREKAGVIAKKIEGNPLDPEKAAKDQIEEPKLE 371


>gi|330813880|ref|YP_004358119.1| RecA protein [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486975|gb|AEA81380.1| RecA protein [Candidatus Pelagibacter sp. IMCC9063]
          Length = 376

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 234/347 (67%), Positives = 292/347 (84%), Gaps = 2/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ K+L+AA+SQI   +GKG++M+LG +  +   IE +S+GSL LDIALGIGG PK RIV
Sbjct: 20  ERQKSLDAAISQIDSNFGKGSVMKLGQRQVM--DIESISTGSLSLDIALGIGGLPKSRIV 77

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLAL  IA++QK+GGTCAF+DAEHALD  YA+KLGV+  +LLISQPDTG
Sbjct: 78  EIYGPESSGKTTLALQVIAEAQKSGGTCAFIDAEHALDPSYAKKLGVNTTDLLISQPDTG 137

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSGA+ ++V+DSVAALTPRAE+EG+MG+   G+QARLMSQALRKLT SI
Sbjct: 138 EQALEITDTLVRSGAISVLVVDSVAALTPRAELEGEMGDHHMGLQARLMSQALRKLTGSI 197

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S  +++FINQ+RMKIGVMFGSPETT GGNALKFYSSVRLDIRR+G+IKD D I GNQT
Sbjct: 198 SKSNTMVIFINQIRMKIGVMFGSPETTAGGNALKFYSSVRLDIRRIGAIKDGDEIVGNQT 257

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK VEFDIMYG+GIS  GELIDLG KA IV+K+GAW+S+KG+++GQG+
Sbjct: 258 RVKVVKNKVAPPFKVVEFDIMYGKGISKLGELIDLGAKADIVEKAGAWYSYKGEKIGQGK 317

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           ENSK +L  N +I+  IE  +R NAGL++D ++  P+   K + +++
Sbjct: 318 ENSKEYLINNPKISAEIEMAIRANAGLISDKMMGNPSPKEKIETEEN 364


>gi|138754323|emb|CAL59728.1| recombinase A [Cloning vector pSC101BADgbaA-ISceI(amp)]
          Length = 364

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 213/348 (61%), Positives = 283/348 (81%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 17  NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 74

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 75  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 134

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 135 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 194

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 195 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 254

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 255 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 314

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            N+  +L++N E A+ IE  +R+      +S       +++  A+ ++
Sbjct: 315 ANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVAETNE 362


>gi|153003330|ref|YP_001377655.1| recA protein [Anaeromyxobacter sp. Fw109-5]
 gi|152026903|gb|ABS24671.1| recA protein [Anaeromyxobacter sp. Fw109-5]
          Length = 358

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 216/328 (65%), Positives = 278/328 (84%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KA+E A+S I++ +GKG+IM+LG++ ++ + ++ VS+GS+ LDIALG+GGFP+GRI
Sbjct: 5   PEKEKAIELAVSSIEKAFGKGSIMRLGNEEALVKDVQAVSTGSVSLDIALGVGGFPRGRI 64

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALH +A++QK GG  AFVDAEHALD  YARKLGV   +LLISQPDT
Sbjct: 65  IEIYGPESSGKTTLALHAVAEAQKKGGIAAFVDAEHALDVGYARKLGVRTDDLLISQPDT 124

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + LVRSGA+D++V+DSVAAL P+AE+EG+MG++  G+QARLMSQALRKLT +
Sbjct: 125 GEQALEIAETLVRSGAIDVLVVDSVAALVPKAELEGEMGDAHMGVQARLMSQALRKLTGT 184

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S  I++FINQ+RMKIGVMFG+PETTTGGNALKFY++ RLDIRR+G+IKD D + GN+
Sbjct: 185 ISKSSTIVIFINQIRMKIGVMFGNPETTTGGNALKFYATQRLDIRRIGAIKDGDQVIGNR 244

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFK+VEFDIMYG GIS  G+L+DLG   +IV+KSG WFSF G+R+GQG
Sbjct: 245 TRVKVVKNKVAPPFKEVEFDIMYGHGISREGDLLDLGSNENIVEKSGTWFSFGGERIGQG 304

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           RE +K FLRE+ E+ + +E  L +  G+
Sbjct: 305 REQAKAFLREHPEVLQQVEGKLFEKFGI 332


>gi|302037041|ref|YP_003797363.1| recombinase recA [Candidatus Nitrospira defluvii]
 gi|300605105|emb|CBK41438.1| Recombinase RecA [Candidatus Nitrospira defluvii]
          Length = 370

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 221/347 (63%), Positives = 280/347 (80%), Gaps = 1/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL+ AL+QI++ YGKGA+M+LG+       +  +SSGSLGLDIALG+GGFP+GR++
Sbjct: 6   EKKRALDLALAQIEKQYGKGAVMKLGADDRPA-DVPAISSGSLGLDIALGVGGFPRGRVI 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL LH IA++QK GG  AF+DAEHALD  YA+KLGV   +LL+SQPDTG
Sbjct: 65  EIFGPESSGKTTLTLHAIAEAQKAGGVAAFIDAEHALDLTYAKKLGVQTDDLLVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+D+IV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 125 EQALEIAETLVRSGAIDVIVVDSVAALVPRAEIEGEMGDSHMGLQARLMSQALRKLTAAI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S+  L+FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+ SIKD   +TG++ 
Sbjct: 185 SKSQTTLIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIESIKDGQDVTGSRV 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PF+Q EFDIM+ EGIS  GEL+D+GV+  +V+K+GAW+S+KG+RLGQGR
Sbjct: 245 RVKVVKNKMAPPFRQAEFDIMFAEGISKSGELVDIGVEKRVVEKAGAWYSYKGERLGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           E  + FL+ N  IA+ IE  +R  AGL +    ++       D   +
Sbjct: 305 EAVRDFLKTNPAIAKEIEGKVRDLAGLPSRGTEKKVEAKEAKDDKPE 351


>gi|209694225|ref|YP_002262153.1| recombinase A [Aliivibrio salmonicida LFI1238]
 gi|226723624|sp|B6ENH8|RECA_ALISL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|208008176|emb|CAQ78319.1| protein RecA (recombinase A) [Aliivibrio salmonicida LFI1238]
          Length = 347

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 214/323 (66%), Positives = 267/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E VS+GSL LDIALG GG P GRIV
Sbjct: 4   NKKKALAAALGQIEKQFGKGSIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G TCAF+DAEHALD IYA+KLGVD+  LL SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLEVIAQAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLCSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEIVDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +VDK+GAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKHKLVDKAGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  F+REN EI   ++  LR+
Sbjct: 302 ANASKFMRENPEIGAELDKKLRE 324


>gi|120554998|ref|YP_959349.1| recombinase A [Marinobacter aquaeolei VT8]
 gi|166220655|sp|A1U2E3|RECA_MARAV RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|120324847|gb|ABM19162.1| recA protein [Marinobacter aquaeolei VT8]
 gi|302608138|emb|CBW44418.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Marinobacter hydrocarbonoclasticus]
          Length = 347

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 224/352 (63%), Positives = 279/352 (79%), Gaps = 9/352 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL AALSQI+R +GKGA+M++G Q    E I  VS+GSLGLD+ALGIGG P GRIV
Sbjct: 4   NRKKALGAALSQIERQFGKGAVMKMGDQPR--EAIPAVSTGSLGLDVALGIGGLPYGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD +YA KLGV++  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAEAQKQGKTCAFVDAEHALDPVYAEKLGVNVDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS AVD+I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT ++
Sbjct: 122 EQALEIADMLVRSNAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNV 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GS+KD D + GN+T
Sbjct: 182 KHANCLMVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKDGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF+Q EF IMYG+GI    E++D+GVK   VDKSGAW+++ G ++GQG+
Sbjct: 242 RVKVVKNKVSPPFRQAEFQIMYGKGIYHMAEVLDMGVKEGFVDKSGAWYAYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
            N+  FL EN++IA  IE+ +R       D L+ +P      +A  +    +
Sbjct: 302 ANACKFLEENLDIANEIEAKVR-------DKLMPKPVKKETAEAPAEANGEL 346


>gi|296932699|gb|ADH93503.1| recombinase A [Pseudomonas sp. In5]
          Length = 350

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 224/348 (64%), Positives = 275/348 (79%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI+R +GKGA+M++G Q    + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKKALAAALGQIERQFGKGAVMRMGDQDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAQAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+ASPF+Q EF I+YG+GI   GE+IDLGV    V+KSGAW++++G ++GQG+
Sbjct: 242 RVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            NS  FL +N EIA  +E  LR      A  +   P   T DD    D
Sbjct: 302 ANSAKFLADNPEIAAKLEKQLRDKLLTPAPDVKASPVKETADDLADAD 349


>gi|189351408|ref|YP_001947036.1| recombinase A [Burkholderia multivorans ATCC 17616]
 gi|205562578|sp|A9AFT0|RECA_BURM1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|10121154|gb|AAG13089.1|AF143774_1 RecA [Burkholderia multivorans]
 gi|10121156|gb|AAG13090.1|AF143775_1 RecA [Burkholderia multivorans ATCC 17616]
 gi|10121158|gb|AAG13091.1|AF143776_1 RecA [Burkholderia multivorans]
 gi|10121160|gb|AAG13092.1|AF143777_1 RecA [Burkholderia multivorans]
 gi|10121162|gb|AAG13093.1|AF143778_1 RecA [Burkholderia multivorans]
 gi|1575711|gb|AAB09577.1| RecA protein [Burkholderia cepacia]
 gi|189335430|dbj|BAG44500.1| recombination protein [Burkholderia multivorans ATCC 17616]
          Length = 348

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 230/331 (69%), Positives = 287/331 (86%), Gaps = 1/331 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 2   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 121 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 241 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           G++N++ FLREN EIA  IE+ +R++ G+ A
Sbjct: 301 GKDNAREFLRENPEIAREIENRIRESLGVAA 331


>gi|475064|emb|CAA54563.1| recA [Corynebacterium glutamicum]
          Length = 376

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 215/357 (60%), Positives = 273/357 (76%), Gaps = 6/357 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+AAL+ I++ +GKGA+M+LG +      I+ +SSG+  +DIALGIGGFP+GRIV
Sbjct: 17  DRQKALDAALALIEKDFGKGAVMRLGDENR--PPIQTISSGNTAIDIALGIGGFPRGRIV 74

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IAQ+QK GG  AF+DAEHALD  YARKLGVD   LL+SQPDTG
Sbjct: 75  EVYGPESSGKTTVALHAIAQAQKAGGIAAFIDAEHALDPDYARKLGVDTDALLVSQPDTG 134

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DIIVIDSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 135 EQALEIADMLVRSGAIDIIVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 194

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR DIRR+ ++KD     GN+T
Sbjct: 195 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRIQTLKDGQDAIGNRT 254

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK++ PFK  EFDIMYGEGIS    +IDL V   IV KSG+WF+++G++LGQG+
Sbjct: 255 RLKVVKNKVSPPFKIAEFDIMYGEGISRESSVIDLAVDNGIVKKSGSWFTYEGEQLGQGK 314

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL----VADSLLQEPAINTKDDADKDDTDNVE 363
           E  ++ L+EN E+ + +E  + +  G+     A   L +  +    + D DD  + E
Sbjct: 315 EKVRLSLKENPELTDELEDKIFKKLGVGKYAAASDELTDDPVELVPNVDFDDEADTE 371


>gi|212709393|ref|ZP_03317521.1| hypothetical protein PROVALCAL_00429 [Providencia alcalifaciens DSM
           30120]
 gi|212688305|gb|EEB47833.1| hypothetical protein PROVALCAL_00429 [Providencia alcalifaciens DSM
           30120]
          Length = 355

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 213/352 (60%), Positives = 282/352 (80%), Gaps = 3/352 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LD+ALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRTM--DVETISTGSLSLDVALGAGGLPLGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q++G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQRSGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ + I G++T
Sbjct: 184 KNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKNGEEIVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+ FGELIDLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINTFGELIDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
            NS  +L+E+ E+A+ I++ LR    L      +  A +  +D+D+++    
Sbjct: 304 ANSTTYLKEHPEVAQEIDTKLRDLL-LNHTGEFKSAATDFINDSDEEEVPEE 354


>gi|56414781|ref|YP_151856.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197363709|ref|YP_002143346.1| recombinase A [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|76363340|sp|Q5PF15|RECA_SALPA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238689955|sp|B5BEN7|RECA_SALPK RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|56129038|gb|AAV78544.1| RecA protein [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. ATCC 9150]
 gi|197095186|emb|CAR60737.1| RecA protein [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. AKU_12601]
          Length = 353

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 210/348 (60%), Positives = 281/348 (80%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AA+ QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAAMGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            N+  +L+EN   A+ IE  +R+      ++       +++  A+ ++
Sbjct: 304 ANATTWLKENPATAKEIEKRVRELLLSNQNATPDFAVDDSEGVAETNE 351


>gi|88858311|ref|ZP_01132953.1| RecA protein (Recombinase A) [Pseudoalteromonas tunicata D2]
 gi|88819928|gb|EAR29741.1| RecA protein (Recombinase A) [Pseudoalteromonas tunicata D2]
          Length = 353

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 227/353 (64%), Positives = 284/353 (80%), Gaps = 2/353 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +K KAL AALSQI+R +GKG+IM+LG   ++   IE +S+GSLG+DIALGIGG P GR
Sbjct: 2   NDNKEKALSAALSQIERQFGKGSIMKLGDSQAL--DIESISTGSLGIDIALGIGGLPAGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEI+GPESSGKTTL L  IA++QK G TCAF+DAEHALD +YA KLGV++K+LL+SQPD
Sbjct: 60  IVEIFGPESSGKTTLTLQVIAEAQKKGKTCAFIDAEHALDPVYAEKLGVNIKDLLVSQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DMLVRSGAVD+++IDSVAALTP+AEIEGDMG+   G+QARLMSQALRKLT 
Sbjct: 120 TGEQALEICDMLVRSGAVDVVIIDSVAALTPKAEIEGDMGDHHVGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I RS  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIRR GS+K+ D + GN
Sbjct: 180 NIKRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRIDIRRTGSVKEGDEVVGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVK+VKNK+A PFKQ EF IMYGEGIS  GELIDLGV+   V+K+GAW+S++G ++GQ
Sbjct: 240 ETRVKIVKNKVAPPFKQAEFIIMYGEGISKHGELIDLGVQHKFVEKAGAWYSYQGNKVGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           G+ NS  FL+EN  IA+ IE  LR    L A    ++   +   +A+    ++
Sbjct: 300 GKSNSIKFLKENPAIADEIEKKLRDMLLLKATIKPEDGIASLAAEAEGSIEED 352


>gi|153206757|ref|ZP_01945598.1| protein RecA [Coxiella burnetii 'MSU Goat Q177']
 gi|212218394|ref|YP_002305181.1| recombinase A [Coxiella burnetii CbuK_Q154]
 gi|120577120|gb|EAX33744.1| protein RecA [Coxiella burnetii 'MSU Goat Q177']
 gi|212012656|gb|ACJ20036.1| RecA [Coxiella burnetii CbuK_Q154]
          Length = 343

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 229/344 (66%), Positives = 284/344 (82%), Gaps = 1/344 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + ++S AL AALSQI+R +GKG++M+LG  G +   I+V+S+GSLGLDIALG+GG P+GR
Sbjct: 1   MDNRSNALNAALSQIERQFGKGSVMRLGDPG-LIPDIDVISTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPE+SGKTTLAL TIA  Q+ GGT AFVDAEHALD+IYA KLGV +++LL+SQPD
Sbjct: 60  IIEIYGPEASGKTTLALQTIASCQRMGGTAAFVDAEHALDAIYAGKLGVKVEDLLVSQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITDMLVRSGAVD+IVIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT+
Sbjct: 120 TGEQALEITDMLVRSGAVDLIVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTA 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I +S  +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G IK  + I G+
Sbjct: 180 NIKKSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGVIKKGEEILGS 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PF+QVEFDI+YG GIS   ELIDLGVK  +V+K+GAW+S+ G+R+GQ
Sbjct: 240 ETRVKVVKNKVAPPFRQVEFDILYGLGISRESELIDLGVKNELVEKAGAWYSYNGERIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           G+EN + F  EN +IA  IE+ LR+              +N  +
Sbjct: 300 GKENVRQFFLENPKIAGEIETRLREKLLPHRQGEKIAEEVNAAE 343


>gi|299534706|ref|ZP_07048036.1| protein recA [Lysinibacillus fusiformis ZC1]
 gi|298729794|gb|EFI70339.1| protein recA [Lysinibacillus fusiformis ZC1]
          Length = 354

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 209/333 (62%), Positives = 269/333 (80%), Gaps = 2/333 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  ALE AL QI++ +GKG+IM+LG +  +   I   SSGSL LD ALG+GG+P+GR
Sbjct: 1   MSDRKAALEQALKQIEKNFGKGSIMKLGEKTDL--EIATSSSGSLALDAALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT+ALH IA+ Q +GG  AF+DAEHALD IYA+KLGV++  LL+SQPD
Sbjct: 59  IIEVYGPESSGKTTVALHAIAEVQASGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGA+DIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R KIGVMFG+PETT GG ALKFYSSVRL++RR  +IK  + I GN
Sbjct: 179 AINKSKTIAIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEAIKQGNDIVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++K+VKNK+A PF+  E DIMYGEGIS  GE +DLGV+  IV KSG+W+++  +RLGQ
Sbjct: 239 RTKIKIVKNKVAPPFRTAEVDIMYGEGISKEGETVDLGVELDIVQKSGSWYAYGDERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           GREN+K +L+EN  + E+I + +R + G+ A S
Sbjct: 299 GRENAKQYLKENTAVLEDIANKIRASYGIAASS 331


>gi|132225|sp|P26344|RECA_ERWCA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|6006452|emb|CAB56783.1| recA [Pectobacterium carotovorum]
          Length = 342

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 209/323 (64%), Positives = 268/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P+GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--NVETISTGSLSLDVALGAGGLPRGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPES GKTTL L  IA +Q+ G  CAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESYGKTTLTLQVIAAAQREGKICAFIDAEHALDPIYAQKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEIGDSHVGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GS+K+ D + G++T
Sbjct: 184 KNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKNGDEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+ FGELIDLGVK  +V+K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQIMYGEGINTFGELIDLGVKHKLVEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+E+ E+   + + LR+
Sbjct: 304 ANATTYLKEHPEMYNELNTKLRE 326


>gi|159044192|ref|YP_001532986.1| recombinase A [Dinoroseobacter shibae DFL 12]
 gi|157911952|gb|ABV93385.1| bacterial DNA recombination [Dinoroseobacter shibae DFL 12]
          Length = 355

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 237/340 (69%), Positives = 281/340 (82%), Gaps = 1/340 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             DK KAL++AL+QI+R +GKG+IM+LG+   + E IE  S+GS+GLDIALGIGG PKGR
Sbjct: 14  NADKQKALDSALAQIERQFGKGSIMKLGADSPVAE-IEATSTGSIGLDIALGIGGIPKGR 72

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD  YARKLGVDL  LLISQPD
Sbjct: 73  IIEIYGPESSGKTTLTLHCIAEEQKKGGVCAFVDAEHALDPQYARKLGVDLDELLISQPD 132

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEIT+ LVRSGAV ++V+DSVAALTP++E+EGDMG++  G QARLMSQA+RKLT 
Sbjct: 133 TGEQALEITETLVRSGAVSMVVVDSVAALTPKSELEGDMGDAQVGAQARLMSQAMRKLTG 192

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +ISRS C ++FINQ+RMKIGVMFGSPETT+GGNALKFYSSVRLDIRR+GS+KD+D I GN
Sbjct: 193 AISRSNCTVIFINQIRMKIGVMFGSPETTSGGNALKFYSSVRLDIRRIGSVKDRDEIVGN 252

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
            T+VKVVKNK+A PFKQVEFDI+YGEGIS  GELIDLGVKA +V KSG+WFS+  +R+GQ
Sbjct: 253 TTKVKVVKNKVAPPFKQVEFDIIYGEGISKMGELIDLGVKAGVVQKSGSWFSYGDERIGQ 312

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348
           GREN+K +LR+N   A  +E  +R   GL       E  I
Sbjct: 313 GRENAKQYLRDNTRTALELEDKIRAAHGLDFQMPDSEAEI 352


>gi|19553160|ref|NP_601162.1| recombinase A [Corynebacterium glutamicum ATCC 13032]
 gi|62390795|ref|YP_226197.1| recombinase A [Corynebacterium glutamicum ATCC 13032]
 gi|145295860|ref|YP_001138681.1| recombinase A [Corynebacterium glutamicum R]
 gi|1172882|sp|P42442|RECA_CORGL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166220641|sp|A4QEW3|RECA_CORGB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|556616|gb|AAD12743.1| RecA [Corynebacterium glutamicum]
 gi|21324725|dbj|BAB99348.1| RecA/RadA recombinase [Corynebacterium glutamicum ATCC 13032]
 gi|41326133|emb|CAF20296.1| DNA RECOMBINATION/REPAIR [Corynebacterium glutamicum ATCC 13032]
 gi|140845780|dbj|BAF54779.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 376

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 215/357 (60%), Positives = 273/357 (76%), Gaps = 6/357 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+AAL+ I++ +GKGA+M+LG +      I+ +SSG+  +DIALGIGGFP+GRIV
Sbjct: 17  DRQKALDAALALIEKDFGKGAVMRLGDENR--PPIQTISSGNTAIDIALGIGGFPRGRIV 74

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IAQ+QK GG  AF+DAEHALD  YARKLGVD   LL+SQPDTG
Sbjct: 75  EVYGPESSGKTTVALHAIAQAQKAGGIAAFIDAEHALDPDYARKLGVDTDALLVSQPDTG 134

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DIIVIDSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 135 EQALEIADMLVRSGAIDIIVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 194

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR DIRR+ ++KD     GN+T
Sbjct: 195 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRIQTLKDGQDAIGNRT 254

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK++ PFK  EFDIMYGEGIS    +IDL V   IV KSG+WF+++G++LGQG+
Sbjct: 255 RLKVVKNKVSPPFKIAEFDIMYGEGISRESSVIDLAVDNGIVKKSGSWFTYEGEQLGQGK 314

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL----VADSLLQEPAINTKDDADKDDTDNVE 363
           E  ++ L+EN E+ + +E  + +  G+     A   L +  +    + D DD  + E
Sbjct: 315 EKVRLSLKENPELTDELEDKIFKKLGVGKYAAASDELTDDPVELVPNVDFDDEADTE 371


>gi|30313404|gb|AAM55294.1| RecA [Burkholderia cepacia]
          Length = 333

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 231/329 (70%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 1   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 59

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 60  EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 119

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I
Sbjct: 120 EQALEITDALVRSGSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 179

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 180 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 239

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 240 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 299

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 DNAREFLRENPEIAREIENRIRESLGVVA 328


>gi|116119178|gb|ABJ74759.1| RecA [Burkholderia sp. R460]
          Length = 347

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 230/347 (66%), Positives = 289/347 (83%), Gaps = 1/347 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 2   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVR G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 121 TGEQALEITDALVRLGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 241 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           G++N++ FLREN EIA  IE+ +R++ G+VA            D+ +
Sbjct: 301 GKDNAREFLRENPEIAREIENRIRESLGVVAMPDGAGSEAEAMDEEE 347


>gi|254448272|ref|ZP_05061734.1| protein RecA [gamma proteobacterium HTCC5015]
 gi|198262139|gb|EDY86422.1| protein RecA [gamma proteobacterium HTCC5015]
          Length = 348

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 222/344 (64%), Positives = 278/344 (80%), Gaps = 9/344 (2%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + KAL AAL QI+R +GKG++M++G    +   IE +S+GSL LD+ALGIGG PKGR+VE
Sbjct: 5   RKKALAAALGQIERQFGKGSVMRMGD--GVIRNIESISTGSLTLDVALGIGGLPKGRVVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ L  +A+ QK GGT AFVDAEHALD  YA+KLGVD+  LL+SQPDTGE
Sbjct: 63  IYGPESSGKTTMTLQVVAECQKAGGTAAFVDAEHALDPTYAKKLGVDVDELLVSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DMLVRS AVD++VIDSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I 
Sbjct: 123 QALEIADMLVRSSAVDVVVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIK 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           RS  +++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IK  D + GN+T+
Sbjct: 183 RSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKKGDEVLGNETK 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK A PFK+  F+I+YGEG+SF GEL+DLGV+  +VDK+GAW+S  G+R+GQG++
Sbjct: 243 VKVVKNKTAPPFKEARFEILYGEGVSFEGELLDLGVEHKLVDKAGAWYSCNGERIGQGKD 302

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           N++ +L+E+ E+A  + S LR       D LL  P     DD +
Sbjct: 303 NARNYLKEHPEMAAELNSKLR-------DILLDLPKDGEADDEE 339


>gi|254575574|gb|ACT68301.1| RecA [Burkholderia cepacia]
          Length = 346

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 230/331 (69%), Positives = 288/331 (87%), Gaps = 1/331 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 120 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSI+  D + GN
Sbjct: 180 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIRKNDEVIGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 240 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           G++N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 GKDNAREFLRENPEIAREIENRIRESLGVVA 330


>gi|84390149|ref|ZP_00991411.1| recombinase A [Vibrio splendidus 12B01]
 gi|84376803|gb|EAP93678.1| recombinase A [Vibrio splendidus 12B01]
          Length = 346

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 213/323 (65%), Positives = 269/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL L  IA +Q+ G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTLTLELIAAAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+T
Sbjct: 182 KQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +V+K+GAW+S+KG ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKNKLVEKAGAWYSYKGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            NS   LREN EIA  +++ LR+
Sbjct: 302 SNSCKHLRENPEIALELDTKLRE 324


>gi|134296854|ref|YP_001120589.1| recombinase A [Burkholderia vietnamiensis G4]
 gi|134140011|gb|ABO55754.1| recA protein [Burkholderia vietnamiensis G4]
          Length = 356

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 233/341 (68%), Positives = 293/341 (85%), Gaps = 3/341 (0%)

Query: 1   MDYRKEMN--IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIA 58
           M+  K+ +    +KSKAL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIA
Sbjct: 1   MEDSKKGSGMTAEKSKALAAALAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIA 59

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV+
Sbjct: 60  LGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVN 119

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARL
Sbjct: 120 VPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARL 179

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GS
Sbjct: 180 MSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGS 239

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW
Sbjct: 240 IKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAW 299

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +S+ G+++GQG++N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 YSYNGEKIGQGKDNAREFLRENPEIAREIENRIRESLGVVA 340


>gi|167623166|ref|YP_001673460.1| recombinase A [Shewanella halifaxensis HAW-EB4]
 gi|189039608|sp|B0TK14|RECA_SHEHH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|167353188|gb|ABZ75801.1| recA protein [Shewanella halifaxensis HAW-EB4]
          Length = 355

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 215/351 (61%), Positives = 279/351 (79%), Gaps = 2/351 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL A LSQI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P GRI
Sbjct: 5   PNKEKALNAVLSQIEKQFGKGSIMKLGEDRSM--DVETISTGSLSLDVALGAGGLPMGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTL L  IA +QK G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDT
Sbjct: 63  VEIYGPESSGKTTLTLEVIAAAQKQGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  +
Sbjct: 123 GEQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           + +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD++ + GN+
Sbjct: 183 LKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDREEVIGNE 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A+PFKQ EF I+YG+GI+  GEL+DLGV+  +++KSGAW+++KG ++GQG
Sbjct: 243 TRVKVVKNKIAAPFKQAEFQILYGQGINSTGELVDLGVQHKLIEKSGAWYAYKGNKIGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           R N+  +L EN E+++ IE+ LR       + +  + A    D+ D +  +
Sbjct: 303 RANAGKYLIENPEVSDEIETTLRAMLLGNGEKIAPDAADTAGDNVDLETGE 353


>gi|34484371|gb|AAP51732.1| RecA [Burkholderia sp. BC14]
          Length = 332

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 228/331 (68%), Positives = 286/331 (86%), Gaps = 1/331 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 120 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 180 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 240 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           G++N++ FLREN EIA  IE+ +R++ G+ +
Sbjct: 300 GKDNAREFLRENPEIAREIENRIRESLGVAS 330


>gi|123441181|ref|YP_001005168.1| recombinase A [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|332160304|ref|YP_004296881.1| recombinase A [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|166220692|sp|A1JK01|RECA_YERE8 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|122088142|emb|CAL10930.1| RecA protein [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|318604465|emb|CBY25963.1| RecA protein [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325664534|gb|ADZ41178.1| recombinase A [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330863732|emb|CBX73832.1| protein recA [Yersinia enterocolitica W22703]
          Length = 354

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 209/350 (59%), Positives = 274/350 (78%), Gaps = 2/350 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDVVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
            N+  +L+EN  +A  ++  LR+      +           D+AD+   +
Sbjct: 304 ANASNYLKENPAVAAELDKKLREMLLNGGNGEQPVATAAFADEADETSEE 353


>gi|91227831|ref|ZP_01262004.1| recombinase A [Vibrio alginolyticus 12G01]
 gi|91188341|gb|EAS74637.1| recombinase A [Vibrio alginolyticus 12G01]
          Length = 347

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 205/323 (63%), Positives = 269/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GEL+DLGVK  +V+K+GAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKAGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +LRE+ E+A+ I++ LR+
Sbjct: 302 ANACNYLREHPEVAKTIDTKLRE 324


>gi|24374940|ref|NP_718983.1| recombinase A [Shewanella oneidensis MR-1]
 gi|30173289|sp|Q8EBS0|RECA_SHEON RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|24349655|gb|AAN56427.1|AE015779_4 recA protein [Shewanella oneidensis MR-1]
          Length = 357

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 215/354 (60%), Positives = 277/354 (78%), Gaps = 6/354 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL A LSQI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P GRI
Sbjct: 5   PNKEKALAAVLSQIEKQFGKGSIMKLGEDRSM--DVETISTGSLSLDVALGAGGLPMGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDT
Sbjct: 63  VEIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  +
Sbjct: 123 GEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           + +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+
Sbjct: 183 LKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A+PFKQ EF I+YG+GI+  GEL+DLGV   +++K+GAW+S+KG ++GQG
Sbjct: 243 TRVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           R N+  +L EN  IA  I+  LR+       +L    A +  DD + +   ++E
Sbjct: 303 RANAGKYLTENPAIAAEIDKTLRELLLSNPSAL----ASSASDDDNVEGNIDLE 352


>gi|297516505|ref|ZP_06934891.1| recombinase A [Escherichia coli OP50]
          Length = 353

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 213/348 (61%), Positives = 283/348 (81%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSRMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            N+  +L++N E A+ IE  +R+      +S       +++  A+ ++
Sbjct: 304 ANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVAETNE 351


>gi|51100544|emb|CAH10075.1| RecA protein [Burkholderia cenocepacia]
          Length = 347

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 232/350 (66%), Positives = 296/350 (84%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG+P+GR
Sbjct: 2   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGWPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 121 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 241 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ G+V+   + +   N  +  D+++
Sbjct: 301 GKDNAREFLRENPEIAREIENRIRESLGVVS---MPDGVANEAEAMDEEE 347


>gi|315282275|ref|ZP_07870719.1| protein RecA [Listeria marthii FSL S4-120]
 gi|313614088|gb|EFR87788.1| protein RecA [Listeria marthii FSL S4-120]
          Length = 347

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 197/349 (56%), Positives = 266/349 (76%), Gaps = 2/349 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GR
Sbjct: 1   MNDRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPD
Sbjct: 59  IIEVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            I++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR   +K    + GN
Sbjct: 179 VINKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK+A PF+  E DIMYGEGIS  GEL+D+  +  +++KSG+W+S+K +R+GQ
Sbjct: 239 KTKIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           GREN+K +L+E+ +I + I   +R+   +  +    +    T    D +
Sbjct: 299 GRENAKQYLKEHTDIRDEISKRVREEYEIDGNKEPLDENEETLSLLDDE 347


>gi|251788612|ref|YP_003003333.1| recA protein [Dickeya zeae Ech1591]
 gi|247537233|gb|ACT05854.1| recA protein [Dickeya zeae Ech1591]
          Length = 358

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 213/354 (60%), Positives = 279/354 (78%), Gaps = 5/354 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG+GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGVGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ + + G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGEEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+ FGEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINTFGELVDLGVKYKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ---NAGLVADSLLQEPAINTKDDADKDDTDN 361
            N+  FL+EN  I+  ++  LR+   +    A   +   +    + A  +  D+
Sbjct: 304 ANACNFLKENPAISAELDKKLRELLLHKDNDAVPTISSESAEYDEAAAGELNDD 357


>gi|296104370|ref|YP_003614516.1| recombinase A [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295058829|gb|ADF63567.1| recombinase A [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 352

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 212/348 (60%), Positives = 276/348 (79%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+FFGEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFFGELVDLGVKEKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            N+  +L+EN   A+ IE  +R+      DS           +   +D
Sbjct: 304 ANAISWLKENPAAAKEIEKKVRELLLNNQDSKPDFVVDGADAEETNED 351


>gi|226312983|ref|YP_002772877.1| RecA protein [Brevibacillus brevis NBRC 100599]
 gi|254790423|sp|C0ZF14|RECA_BREBN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226095931|dbj|BAH44373.1| RecA protein [Brevibacillus brevis NBRC 100599]
          Length = 352

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 217/355 (61%), Positives = 278/355 (78%), Gaps = 3/355 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  ALE+AL QI++ +GKG+IM+LG   +I   I   SSG+L LDIALG+GGFP+GR
Sbjct: 1   MSDRRAALESALRQIEKQFGKGSIMKLGEVSNI--QISTASSGALALDIALGVGGFPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEIYGPESSGKTT+ALH IA+ Q+ GG  AF+DAEHALD +YA KLGV++  LL+SQPD
Sbjct: 59  IVEIYGPESSGKTTVALHAIAEVQRQGGQAAFIDAEHALDPVYAAKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDIIV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R+  SIK  + I G+
Sbjct: 179 AINKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRKAESIKVGNDILGS 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK+A PFK  E DIMYGEGIS  G ++D+G +  +V KSGAW+SF  +RLGQ
Sbjct: 239 KTKIKVVKNKVAPPFKVAEVDIMYGEGISREGSILDIGSEIDVVQKSGAWYSFNEERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           GRENSK+FL+EN  IA  IE+ +R+   L   S+  E       + D++ T ++E
Sbjct: 299 GRENSKVFLKENPHIASQIETKVREYFSLNPSSV-PEAEAEHDPEQDEEPTFDLE 352


>gi|222151124|ref|YP_002560278.1| recombinase RecA [Macrococcus caseolyticus JCSC5402]
 gi|254790437|sp|B9EBH1|RECA_MACCJ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|222120247|dbj|BAH17582.1| recombinase RecA [Macrococcus caseolyticus JCSC5402]
          Length = 353

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 203/355 (57%), Positives = 267/355 (75%), Gaps = 2/355 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + ++ KAL+  +  +++ +GKGA+M+LG +      +  VSSGS+ LD ALG+GG+PKGR
Sbjct: 1   MSERQKALDTVIKNMEKSFGKGAVMKLGDRTD--RNVSTVSSGSITLDSALGVGGYPKGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTT+ALH IA+ Q+ GG  AF+DAEHALD +YA+ LGVD++NL +SQPD
Sbjct: 59  IIEIYGPESSGKTTVALHAIAEVQRQGGVAAFIDAEHALDPVYAKNLGVDIENLYLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GEQ LEI +  VRSGAVDIIV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKL+ 
Sbjct: 119 HGEQGLEIAEAFVRSGAVDIIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           S+S+S  I +FINQ+R KIGVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN
Sbjct: 179 SVSKSNTIAIFINQVREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK+A PFK  E DIMYG+GIS  GE++DLG +  ++ KSGAW+S+ G+R+GQ
Sbjct: 239 RTKIKVVKNKVAPPFKVAEVDIMYGKGISREGEIVDLGAEYEVLQKSGAWYSYDGERIGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           GREN K +L+EN E+ + I+  +R+  G+ A               DK   D +E
Sbjct: 299 GRENIKTYLKENPEVRDEIDQKIRKAMGVGASLEEASAQKEEVPVEDKLFDDELE 353


>gi|6226684|sp|P96185|RECA_XENBV RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|4220426|gb|AAD12585.1| RecA [Xenorhabdus bovienii]
          Length = 358

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 214/357 (59%), Positives = 278/357 (77%), Gaps = 3/357 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P G
Sbjct: 3   NDENKQKALAAALGQIEKQFGKGSIMRLGENRSM--DVETISTGSLSLDIALGAGGLPMG 60

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQP
Sbjct: 61  RIVEIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQP 120

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL 
Sbjct: 121 DTGEQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 180

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++  S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GS+K+ D + G
Sbjct: 181 GNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSVKNGDEVVG 240

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           ++TRVKVVKNK+A+PFKQ EF I+YGEGI+ FGEL+DLGVK  +V+K+GAW+S+ G ++G
Sbjct: 241 SETRVKVVKNKIAAPFKQAEFQILYGEGINTFGELVDLGVKHKMVEKAGAWYSYNGDKIG 300

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD-DADKDDTDNVE 363
           QG+ N+ I+L+E+ E++  ++  LR+             +    D + + ++  N E
Sbjct: 301 QGKANATIYLKEHPEVSAELDKKLRELLLNNTGGFSSAVSDYVADYEDNGEEVKNEE 357


>gi|325983480|ref|YP_004295882.1| recA protein [Nitrosomonas sp. AL212]
 gi|325532999|gb|ADZ27720.1| recA protein [Nitrosomonas sp. AL212]
          Length = 344

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 222/342 (64%), Positives = 281/342 (82%), Gaps = 1/342 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++SKAL+ AL+QI++ +GKG+IM+LG+   +   I+VVS+GSLGLDIALG+GG P+GRIV
Sbjct: 4   NRSKALDVALAQIEKQFGKGSIMRLGAN-DVAYDIQVVSTGSLGLDIALGVGGLPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA+K+GV++K LLISQPD G
Sbjct: 63  EIYGPESSGKTTLTLQVIAEMQKVGGTAAFIDAEHALDPQYAQKIGVNVKELLISQPDNG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VDIIVIDSVAALTPRAEIEGDMG+   G+QARLMSQALRKLT++I
Sbjct: 123 EQALEIADMLVRSGSVDIIVIDSVAALTPRAEIEGDMGDPQMGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK  D   GN+T
Sbjct: 183 KRSNTMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKKGDETIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ +FDI+YGEGIS   E+I+LGV   ++DK+GAW+++KG+++GQG+
Sbjct: 243 RVKVVKNKVAPPFKQADFDILYGEGISRESEIIELGVLHKLIDKAGAWYAYKGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           +N + +L+E+ +IA  IE  +R   G+   +   +  I  + 
Sbjct: 303 DNVRDYLKEHKDIALEIEQKIRSIVGIADQASPVKEKIEKEK 344


>gi|262273677|ref|ZP_06051490.1| RecA protein [Grimontia hollisae CIP 101886]
 gi|262222092|gb|EEY73404.1| RecA protein [Grimontia hollisae CIP 101886]
          Length = 347

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 220/344 (63%), Positives = 276/344 (80%), Gaps = 2/344 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   IE VS+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDDRTM--DIETVSTGSLSLDIALGAGGLPYGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAF+DAEHALD IYARKL VD+ NLL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAEAQKQGKTCAFIDAEHALDPIYARKLNVDIDNLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I+IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT++I
Sbjct: 122 EQALEIADALTRSGAVDVIIIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTANI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D + GN T
Sbjct: 182 KNSNTLMIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEVVGNDT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+ +GELIDLGVK  +V+K+GAW+S+ G+++GQG+
Sbjct: 242 RVKVVKNKIAAPFKQAEFQILYGEGINLYGELIDLGVKHKLVEKAGAWYSYNGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
            N+  FL+EN EIA+ ++  LR           +       ++ 
Sbjct: 302 ANACKFLKENPEIAKELDKTLRDMLLQNGQPQAENKDAELPEEE 345


>gi|224283395|ref|ZP_03646717.1| recombinase A [Bifidobacterium bifidum NCIMB 41171]
 gi|313140550|ref|ZP_07802743.1| protein recA [Bifidobacterium bifidum NCIMB 41171]
 gi|313133060|gb|EFR50677.1| protein recA [Bifidobacterium bifidum NCIMB 41171]
          Length = 396

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 205/351 (58%), Positives = 272/351 (77%), Gaps = 4/351 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL++AL Q+++ +GKG+ M+LG +    + +EV+ +GSL LD+ALGIGG PKGRIVE
Sbjct: 37  RKAALDSALEQVEKSFGKGSAMRLGDKPE--QNVEVIPTGSLALDLALGIGGLPKGRIVE 94

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH +A +QK GG  AF+DAEHALD +YAR LGVD  +L++SQPD GE
Sbjct: 95  IYGPESSGKTTLALHVVANAQKNGGVAAFIDAEHALDPVYARHLGVDTDSLIVSQPDNGE 154

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DML+RSGA+D+IVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRK+T +++
Sbjct: 155 QALEIADMLIRSGALDVIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKMTGALA 214

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLDIRR+ +IK+ +   GN+T+
Sbjct: 215 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDIRRIQTIKNGEEAVGNRTK 274

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNKMA PFK  EFD++YGEGIS  G ++D+ ++ ++V KSG+WF++ G +LGQGRE
Sbjct: 275 VKVVKNKMAPPFKSAEFDVLYGEGISKEGSVLDMALQCNVVKKSGSWFTYDGDQLGQGRE 334

Query: 312 NSKIFLRENIEIAENIESLLRQNAGL--VADSLLQEPAINTKDDADKDDTD 360
           N + FL++N +I E I + ++   GL  V D L+   +    D  +    D
Sbjct: 335 NVRKFLKDNPQITEEIGNKVKAEFGLIEVPDQLVDGESATDGDAPETAPED 385


>gi|116749954|ref|YP_846641.1| recA protein [Syntrophobacter fumaroxidans MPOB]
 gi|166220688|sp|A0LLA4|RECA_SYNFM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|116699018|gb|ABK18206.1| recA protein [Syntrophobacter fumaroxidans MPOB]
          Length = 343

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 208/329 (63%), Positives = 272/329 (82%), Gaps = 1/329 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + ++ +A++ A+SQI+R+ GKGAIM+LG      E I V+S+G L LD+ALGIGG  +GR
Sbjct: 4   VDERQRAIDTAVSQIERMCGKGAIMRLGEGAQNVE-IPVISTGCLSLDLALGIGGVARGR 62

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EI+GPESSGKTTLALH +A++QK GG  AF+DAEHALD  YARKLGV +++LLISQPD
Sbjct: 63  IMEIFGPESSGKTTLALHVVAEAQKLGGLAAFIDAEHALDVNYARKLGVQVEDLLISQPD 122

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GEQALEI ++LVRS A+D+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRKL S
Sbjct: 123 YGEQALEIAEILVRSNAIDVIVVDSVAALVPKAEIEGEMGDPHVGLQARLMSQALRKLVS 182

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           SIS+S+  ++FINQ+RMKIGVM+GSPETTTGGNALKFY+++RLDIRRVG IKD   + GN
Sbjct: 183 SISKSRTCVIFINQIRMKIGVMYGSPETTTGGNALKFYATMRLDIRRVGPIKDGQEVVGN 242

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PF++VEFD++YG GIS  G+++DL V++  ++KSG W+S+ G+RLGQ
Sbjct: 243 RTRVKVVKNKIAPPFREVEFDVVYGRGISREGDILDLAVESGAIEKSGTWYSYSGERLGQ 302

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGL 337
           GREN+K FLRE+ ++   +E  LR+   L
Sbjct: 303 GRENAKNFLREHPDLLGELERKLREAHNL 331


>gi|167585552|ref|ZP_02377940.1| recombinase A [Burkholderia ubonensis Bu]
          Length = 356

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 235/360 (65%), Positives = 300/360 (83%), Gaps = 6/360 (1%)

Query: 1   MDYRKEMN--IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIA 58
           M+  K+ +    +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIA
Sbjct: 1   MEDSKKGSGLTAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIA 59

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV+
Sbjct: 60  LGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVN 119

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARL
Sbjct: 120 VPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARL 179

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GS
Sbjct: 180 MSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGS 239

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW
Sbjct: 240 IKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAW 299

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           +S+ G+++GQG++N++ FLREN EIA  IE+ +R++ G+ A   + + A N  +  D+++
Sbjct: 300 YSYNGEKIGQGKDNAREFLRENPEIAREIENRIRESLGVAA---MPDGAGNEAEAMDEEE 356


>gi|77464021|ref|YP_353525.1| recombinase A [Rhodobacter sphaeroides 2.4.1]
 gi|126462866|ref|YP_001043980.1| recombinase A [Rhodobacter sphaeroides ATCC 17029]
 gi|166220670|sp|A3PLJ2|RECA_RHOS1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|77388439|gb|ABA79624.1| Recombinase A, DNA recombination protein [Rhodobacter sphaeroides
           2.4.1]
 gi|126104530|gb|ABN77208.1| recA protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 357

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 237/352 (67%), Positives = 292/352 (82%), Gaps = 4/352 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           ++ R+EM   DK+KALE+AL+QI+R +GKG+IM+LG+   + E IE  S+GSLGLDIALG
Sbjct: 9   LNGRREM---DKAKALESALAQIERQFGKGSIMKLGANSPVME-IEATSTGSLGLDIALG 64

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG PKGRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YA+KLGV+L 
Sbjct: 65  IGGLPKGRIIEIYGPESSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLD 124

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LLISQPDTGEQALEI D LVRSGAV++IV+DSVAALTP++EIEGDMG+   G QARLMS
Sbjct: 125 ELLISQPDTGEQALEIVDTLVRSGAVNLIVVDSVAALTPKSEIEGDMGDMQMGSQARLMS 184

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKLT+SI RS C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK
Sbjct: 185 QAMRKLTASIGRSNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIK 244

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D+D++ GN T+VKVVKNK+A PF++VEFDIMYGEGIS  GEL+DLGVKA +V+KSG+W+S
Sbjct: 245 DRDNVIGNTTKVKVVKNKVAPPFREVEFDIMYGEGISKTGELVDLGVKAGVVEKSGSWYS 304

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           +  +R+GQGREN+K FLR N  +A +IE  +R + GL   +       +  D
Sbjct: 305 YGDERIGQGRENAKAFLRANPTVAGDIEDRIRASHGLDFSTGEDGKGDDLVD 356


>gi|78067448|ref|YP_370217.1| recombinase A [Burkholderia sp. 383]
 gi|123756106|sp|Q39D93|RECA_BURS3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|77968193|gb|ABB09573.1| RecA DNA recombination protein [Burkholderia sp. 383]
          Length = 348

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 231/331 (69%), Positives = 287/331 (86%), Gaps = 1/331 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 2   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 121 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 241 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           G++N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 301 GKDNAREFLRENPEIAREIENRIRESLGVVA 331


>gi|270342006|gb|ACZ74645.1| RecA [Burkholderia cepacia]
          Length = 347

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 232/350 (66%), Positives = 293/350 (83%), Gaps = 3/350 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 120 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 180 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 240 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IES +R++ G+   S+      N  +  D+++
Sbjct: 300 GKDNAREFLRENPEIAREIESRIRESLGVA--SMPDGVVGNEAEAMDEEE 347


>gi|255524214|ref|ZP_05391173.1| recA protein [Clostridium carboxidivorans P7]
 gi|255512039|gb|EET88320.1| recA protein [Clostridium carboxidivorans P7]
          Length = 395

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 218/354 (61%), Positives = 279/354 (78%), Gaps = 2/354 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +K KALEAAL QI++ +GKG+IM+LG   ++   IE +S+G L LDIALGIGG P+GR
Sbjct: 42  NGEKLKALEAALGQIEKQFGKGSIMKLGEHSTL--DIEAISTGCLDLDIALGIGGVPRGR 99

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTT+ALH +A++QK  G  AF+DAEHALD +YAR LGVD++NL++SQPD
Sbjct: 100 VVEIYGPESSGKTTVALHIVAEAQKAAGAAAFIDAEHALDPVYARALGVDIENLIVSQPD 159

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVD+IV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT 
Sbjct: 160 TGEQALEIAEALVRSGAVDVIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTG 219

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SKC+++FINQ+R K+GVMFG+PETT GG ALKFY+SVR+DIRR+ SIK  DSI GN
Sbjct: 220 AINKSKCVIIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDIRRIDSIKQGDSIVGN 279

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKV KNK+A PFKQ EFDIMY +GIS  G ++D+GV+  +V KSGAWF++K  RLGQ
Sbjct: 280 RTRVKVTKNKVAPPFKQAEFDIMYNQGISREGNVLDVGVREELVQKSGAWFAYKENRLGQ 339

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           GREN+K FL+EN  I   IE+ +R+   L         A    ++  K + ++ 
Sbjct: 340 GRENAKQFLKENSSILYEIENKIREKYELPIMKPSANKAETKNENKSKQEANSE 393


>gi|170734016|ref|YP_001765963.1| recombinase A [Burkholderia cenocepacia MC0-3]
 gi|169817258|gb|ACA91841.1| recA protein [Burkholderia cenocepacia MC0-3]
          Length = 356

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 234/360 (65%), Positives = 300/360 (83%), Gaps = 6/360 (1%)

Query: 1   MDYRKEMN--IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIA 58
           M+  K+ +    +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIA
Sbjct: 1   MEDSKKGSGMTAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIA 59

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV+
Sbjct: 60  LGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVN 119

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARL
Sbjct: 120 VPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARL 179

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GS
Sbjct: 180 MSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGS 239

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW
Sbjct: 240 IKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAW 299

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           +S+ G+++GQG++N++ FLREN EIA  IE+ +R++ G+V+   + +   N  +  D+++
Sbjct: 300 YSYNGEKIGQGKDNAREFLRENPEIAREIENRIRESLGVVS---MPDGVANEAEVLDEEE 356


>gi|115352750|ref|YP_774589.1| recombinase A [Burkholderia ambifaria AMMD]
 gi|172061614|ref|YP_001809266.1| recombinase A [Burkholderia ambifaria MC40-6]
 gi|115282738|gb|ABI88255.1| recA protein [Burkholderia ambifaria AMMD]
 gi|171994131|gb|ACB65050.1| recA protein [Burkholderia ambifaria MC40-6]
          Length = 359

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 231/341 (67%), Positives = 292/341 (85%), Gaps = 3/341 (0%)

Query: 1   MDYRKEMN--IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIA 58
           M+  K+ +    +KSKAL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIA
Sbjct: 1   MEDSKKGSGMTAEKSKALAAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIA 59

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV+
Sbjct: 60  LGVGGLPRGRVVEIYGPESSGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVN 119

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARL
Sbjct: 120 VPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARL 179

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GS
Sbjct: 180 MSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGS 239

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW
Sbjct: 240 IKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAW 299

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +S+ G+++GQG++N++ FLREN EIA  IE+ +R++ G+V 
Sbjct: 300 YSYNGEKIGQGKDNAREFLRENPEIAREIENRIRESLGVVT 340


>gi|188534791|ref|YP_001908588.1| Recombinase A [Erwinia tasmaniensis Et1/99]
 gi|238690917|sp|B2VHD6|RECA_ERWT9 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|188029833|emb|CAO97714.1| Recombinase A [Erwinia tasmaniensis Et1/99]
          Length = 355

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 216/351 (61%), Positives = 278/351 (79%), Gaps = 3/351 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++T
Sbjct: 184 KNSGTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+ FGEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQIMYGEGINIFGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQN-AGLVADSLLQEPAINTKDDADKDDTD 360
            N+  FL+EN  IA  I++ LR+   G   D     PA +  D+  +   +
Sbjct: 304 ANAGNFLKENSAIANEIDAKLREMLLGNQDDKPDFTPAAHEVDEGSEAKEN 354


>gi|296330907|ref|ZP_06873382.1| recombinase A [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674425|ref|YP_003866097.1| multifunctional SOS repair factor [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151912|gb|EFG92786.1| recombinase A [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305412669|gb|ADM37788.1| multifunctional SOS repair factor [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 348

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 208/339 (61%), Positives = 270/339 (79%), Gaps = 2/339 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG +      I  V SGSL LD ALGIGG+P+GR
Sbjct: 1   MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTR--ISTVPSGSLALDTALGIGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT+ALH IA+ Q+ GG  AF+DAEHALD +YA+KLGV+++ LL+SQPD
Sbjct: 59  IIEVYGPESSGKTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDI+V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K  + + GN
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK+A PF+  E DIMYGEGIS  GE+IDLG +  IV KSG+W+S++ +RLGQ
Sbjct: 239 KTKIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           GREN+K FL+EN +I   I+  +R++ GL      Q+ A
Sbjct: 299 GRENAKQFLKENKDIMLMIQEQIREHYGLDNHGAAQQQA 337


>gi|269140204|ref|YP_003296905.1| RecA/RadA recombinase [Edwardsiella tarda EIB202]
 gi|267985865|gb|ACY85694.1| RecA/RadA recombinase [Edwardsiella tarda EIB202]
 gi|304560035|gb|ADM42699.1| RecA [Edwardsiella tarda FL6-60]
          Length = 353

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 222/351 (63%), Positives = 280/351 (79%), Gaps = 2/351 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LD+ALGIGG P GR+V
Sbjct: 4   NKQRALAAALGQIEKQFGKGSIMRLGDTQTL--DIESISTGSLSLDVALGIGGLPMGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA++Q  G TCAF+DAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIFGPESSGKTTLTLSVIARAQAAGKTCAFIDAEHALDPIYAAKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVD+I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 122 EQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C++VFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK+ D + GN+T
Sbjct: 182 KNANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG GIS   ELIDLGVK  ++DKSGAW+S+ G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGAGISKESELIDLGVKHKLLDKSGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
            NS  FL+EN  I+  +E  LR+     A +   E A   ++D    D +N
Sbjct: 302 ANSMKFLQENTTISAELEGKLRELLLSHAAATDAERAGAEREDDAATDDEN 352


>gi|290476265|ref|YP_003469169.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Xenorhabdus bovienii SS-2004]
 gi|289175602|emb|CBJ82405.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Xenorhabdus bovienii SS-2004]
          Length = 358

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 216/357 (60%), Positives = 279/357 (78%), Gaps = 3/357 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P G
Sbjct: 3   NDENKQKALAAALGQIEKQFGKGSIMRLGENRSM--DVETISTGSLSLDIALGAGGLPMG 60

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQP
Sbjct: 61  RIVEIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQP 120

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL 
Sbjct: 121 DTGEQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 180

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++  S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GS+K+ D + G
Sbjct: 181 GNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSVKNGDEVVG 240

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           ++TRVKVVKNK+A+PFKQ EF I+YGEGI+ FGEL+DLGVK  +V+K+GAW+S+ G ++G
Sbjct: 241 SETRVKVVKNKIAAPFKQAEFQILYGEGINTFGELVDLGVKHKMVEKAGAWYSYNGDKIG 300

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD-DADKDDTDNVE 363
           QG+ N+ I+L+E+ EI+  ++  LR+     A       +    D + + ++  N E
Sbjct: 301 QGKANATIYLKEHPEISAELDKKLRELLLNNAGGFNSAVSDYEADYEDNGEEVKNEE 357


>gi|97537035|sp|Q07809|RECA_PSEST RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|50250477|emb|CAH03858.1| RecA protein [Pseudomonas stutzeri]
          Length = 347

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 212/345 (61%), Positives = 272/345 (78%), Gaps = 2/345 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI++ +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKRALAAALGQIEKQFGKGAVMRMGDHDR--QAIPSISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAAAQRMGSTCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+Y +     GE+IDLGV+  +V+KSGAW+++KG ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYDQAFYRNGEIIDLGVQQGLVEKSGAWYAYKGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            N+  +L EN EI + IE  +R    + + +    P      DAD
Sbjct: 302 ANAAKYLEENPEIGQEIEQQIRAKLLVTSANTKATPVAEDLADAD 346


>gi|254247311|ref|ZP_04940632.1| RecA/RadA recombinase [Burkholderia cenocepacia PC184]
 gi|124872087|gb|EAY63803.1| RecA/RadA recombinase [Burkholderia cenocepacia PC184]
          Length = 356

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 234/360 (65%), Positives = 300/360 (83%), Gaps = 6/360 (1%)

Query: 1   MDYRKEMN--IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIA 58
           M+  K+ +    +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIA
Sbjct: 1   MEDSKKGSGMTAEKSKALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIA 59

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV+
Sbjct: 60  LGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVN 119

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARL
Sbjct: 120 VPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARL 179

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GS
Sbjct: 180 MSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGS 239

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW
Sbjct: 240 IKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAW 299

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           +S+ G+++GQG++N++ FLREN EIA  IE+ +R++ G+V+   + +   N  +  D+++
Sbjct: 300 YSYNGEKIGQGKDNAREFLRENPEIAREIENRIRESLGVVS---MPDGVANEAEALDEEE 356


>gi|221639883|ref|YP_002526145.1| recombinase A [Rhodobacter sphaeroides KD131]
 gi|221160664|gb|ACM01644.1| Protein recA [Rhodobacter sphaeroides KD131]
          Length = 367

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 237/352 (67%), Positives = 292/352 (82%), Gaps = 4/352 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           ++ R+EM   DK+KALE+AL+QI+R +GKG+IM+LG+   + E IE  S+GSLGLDIALG
Sbjct: 19  LNGRREM---DKAKALESALAQIERQFGKGSIMKLGANSPVME-IEATSTGSLGLDIALG 74

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG PKGRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YA+KLGV+L 
Sbjct: 75  IGGLPKGRIIEIYGPESSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLD 134

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LLISQPDTGEQALEI D LVRSGAV++IV+DSVAALTP++EIEGDMG+   G QARLMS
Sbjct: 135 ELLISQPDTGEQALEIVDTLVRSGAVNLIVVDSVAALTPKSEIEGDMGDMQMGSQARLMS 194

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKLT+SI RS C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK
Sbjct: 195 QAMRKLTASIGRSNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIK 254

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D+D++ GN T+VKVVKNK+A PF++VEFDIMYGEGIS  GEL+DLGVKA +V+KSG+W+S
Sbjct: 255 DRDNVIGNTTKVKVVKNKVAPPFREVEFDIMYGEGISKTGELVDLGVKAGVVEKSGSWYS 314

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           +  +R+GQGREN+K FLR N  +A +IE  +R + GL   +       +  D
Sbjct: 315 YGDERIGQGRENAKAFLRANPTVAGDIEDRIRASHGLDFSTGEDGKGDDLVD 366


>gi|157148233|ref|YP_001455552.1| recombinase A [Citrobacter koseri ATCC BAA-895]
 gi|166220638|sp|A8ANQ3|RECA_CITK8 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|157085438|gb|ABV15116.1| hypothetical protein CKO_04050 [Citrobacter koseri ATCC BAA-895]
          Length = 354

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 213/350 (60%), Positives = 279/350 (79%), Gaps = 2/350 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
            N+  +L+EN   A+ IE  +R+      DS       +  +   + + D
Sbjct: 304 ANATAWLKENPATAKEIEKKVRELLLSNQDSTPDFSVDDNGEGVKETNED 353


>gi|126256482|gb|ABO09806.1| RecA [Burkholderia sp. Y10]
          Length = 347

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 234/350 (66%), Positives = 295/350 (84%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 2   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 121 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 241 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R + G+VA   + + A N  +  D+++
Sbjct: 301 GKDNAREFLRENPEIAREIENRIRGSLGVVA---MPDGAGNEAEAMDEEE 347


>gi|121998434|ref|YP_001003221.1| recombinase A [Halorhodospira halophila SL1]
 gi|166220650|sp|A1WXK7|RECA_HALHL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|121589839|gb|ABM62419.1| recA protein [Halorhodospira halophila SL1]
          Length = 354

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 223/346 (64%), Positives = 280/346 (80%), Gaps = 1/346 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL AAL QI++ +GKGA+M++G   ++   ++ +S+GSL LD+ALGIGG P+GR+V
Sbjct: 4   DRKKALGAALGQIEKQFGKGAVMRMGDARAVRGDVKSISTGSLALDVALGIGGLPRGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA++QK GG  AFVDAEHALD  YA  +GVD+ +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLHIIAEAQKAGGAAAFVDAEHALDPDYAEAVGVDINDLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG +D++V+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT SI
Sbjct: 124 EQALEIADMLVRSGGLDVVVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGSI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVR+DIRR+G+IK  D + GN+T
Sbjct: 184 QRSNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRMDIRRLGAIKKGDEVLGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFKQ EF+I+YGEGIS  GE+ID+GV    VDKSGAW+S+ G R+GQG+
Sbjct: 244 RVKVVKNKMAPPFKQAEFEILYGEGISREGEIIDMGVAQGFVDKSGAWYSYNGDRIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           +N++ FLR N +IA +IE+ +R+   L       EP  +   D ++
Sbjct: 304 DNARQFLRNNPQIAADIEARIREKV-LGTALPEAEPTEDAASDTEQ 348


>gi|107023588|ref|YP_621915.1| recombinase A [Burkholderia cenocepacia AU 1054]
 gi|116690672|ref|YP_836295.1| recombinase A [Burkholderia cenocepacia HI2424]
 gi|105893777|gb|ABF76942.1| recA protein [Burkholderia cenocepacia AU 1054]
 gi|116648761|gb|ABK09402.1| recA protein [Burkholderia cenocepacia HI2424]
          Length = 356

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 234/360 (65%), Positives = 300/360 (83%), Gaps = 6/360 (1%)

Query: 1   MDYRKEMN--IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIA 58
           M+  K+ +    +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIA
Sbjct: 1   MEDSKKGSGMTAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIA 59

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV+
Sbjct: 60  LGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVN 119

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARL
Sbjct: 120 VPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARL 179

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GS
Sbjct: 180 MSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGS 239

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW
Sbjct: 240 IKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAW 299

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           +S+ G+++GQG++N++ FLREN EIA  IE+ +R++ G+V+   + +   N  +  D+++
Sbjct: 300 YSYNGEKIGQGKDNAREFLRENPEIAREIENRIRESLGVVS---MPDGVANEAEALDEEE 356


>gi|312959310|ref|ZP_07773827.1| RecA [Pseudomonas fluorescens WH6]
 gi|311286027|gb|EFQ64591.1| RecA [Pseudomonas fluorescens WH6]
          Length = 352

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 218/350 (62%), Positives = 274/350 (78%), Gaps = 2/350 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE+IDLGV    V+KSGAW+++ G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
            NS  FL +N +IA  +E  +R      A  +         ++ ++ DTD
Sbjct: 302 ANSAKFLADNPDIAATLEKQIRDKLLTPAPDVKATANREPVEEVEEADTD 351


>gi|116620140|ref|YP_822296.1| recA protein [Candidatus Solibacter usitatus Ellin6076]
 gi|116223302|gb|ABJ82011.1| recA protein [Candidatus Solibacter usitatus Ellin6076]
          Length = 355

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 207/332 (62%), Positives = 282/332 (84%), Gaps = 1/332 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+  ++S+ALE AL QI++ +GKG+I++LGS+ +I   + V+S+GS+ LD ALG+GGFP+
Sbjct: 1   MDEKERSRALETALGQIEKQFGKGSILRLGSKDAIV-PVSVISTGSISLDAALGVGGFPR 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI EI+GPESSGKTT+AL  +A++QK GG  AF+D EHALD  YARKLGVD+ NLL+SQ
Sbjct: 60  GRINEIFGPESSGKTTIALQVVAEAQKAGGIAAFIDVEHALDPTYARKLGVDVDNLLVSQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT  L+ SG +D++V+DSVAAL P++E++G+MG+S  G+QARLMSQALRKL
Sbjct: 120 PDYGEQALEITAHLIASGQIDVLVVDSVAALVPKSELDGEMGDSHMGVQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T S+++S+  L+FINQ+R KIGVMFG+PETTTGG ALKFYS+VRLDIRR+G+IKD D++ 
Sbjct: 180 TGSVNKSRTCLIFINQIREKIGVMFGNPETTTGGRALKFYSTVRLDIRRIGAIKDGDAVV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+T+VKVVKNK+ASPF++ EFDI+YGEG+S  G+L+DLGV  ++V+KSG+WFS+KG R+
Sbjct: 240 GNRTKVKVVKNKVASPFREAEFDIIYGEGVSKEGDLLDLGVAQNLVEKSGSWFSYKGDRI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338
           GQGREN++ FL++N +I + +++ LR+  GLV
Sbjct: 300 GQGRENARQFLKDNPDIRKAVDTELRKTLGLV 331


>gi|116119176|gb|ABJ74758.1| RecA [Burkholderia sp. R456]
          Length = 348

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 231/350 (66%), Positives = 293/350 (83%), Gaps = 3/350 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 2   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 121 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 241 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ G+   S+      N  +  D+++
Sbjct: 301 GKDNAREFLRENPEIAREIENRIRESLGVA--SMPDGVVGNEAEAMDEEE 348


>gi|242238443|ref|YP_002986624.1| recA protein [Dickeya dadantii Ech703]
 gi|242130500|gb|ACS84802.1| recA protein [Dickeya dadantii Ech703]
          Length = 363

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 213/350 (60%), Positives = 278/350 (79%), Gaps = 5/350 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG+GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGVGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIKD + + G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKDGEEVIGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+ +GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINTYGELVDLGVKFKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ---NAGLVADSLLQEPAINTKDDADKD 357
            N+  FL+EN  I+  I+  LR+   + G    ++     +    + D +
Sbjct: 304 SNACNFLKENPAISTEIDKKLREMLLHKGNEPVTVAVAATVGGDAEYDAE 353


>gi|291457715|ref|ZP_06597105.1| protein RecA [Bifidobacterium breve DSM 20213]
 gi|291380768|gb|EFE88286.1| protein RecA [Bifidobacterium breve DSM 20213]
          Length = 416

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 202/332 (60%), Positives = 264/332 (79%), Gaps = 2/332 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
             +  AL+ AL+Q+++ +GKG+ M+LG Q    + +EV+ +GSL LD+ALGIGG PKGRI
Sbjct: 43  PKRKAALDTALAQVEKSFGKGSAMRLGDQP--VQNVEVIPTGSLALDMALGIGGLPKGRI 100

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH +A +QK GG  A++DAEHALD  YARKLGVD  +L++SQPD 
Sbjct: 101 VEIYGPESSGKTTLALHVVANAQKKGGVAAYIDAEHALDPAYARKLGVDTDSLIVSQPDN 160

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 161 GEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGA 220

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++++    +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLDIRR+ ++K+ D   GN+
Sbjct: 221 LAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDIRRIQTLKNGDEAVGNR 280

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFK  EFD++YGEGIS  G +ID+  +  +V KSG+WF+++G +LGQG
Sbjct: 281 TRVKVVKNKMAPPFKSAEFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTYEGDQLGQG 340

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           RE  + FL++N  I E IE+ ++   GL+  +
Sbjct: 341 REKVRQFLKDNPAITEEIENKVKAEFGLIGSA 372


>gi|315655225|ref|ZP_07908126.1| recombination protein A [Mobiluncus curtisii ATCC 51333]
 gi|315490480|gb|EFU80104.1| recombination protein A [Mobiluncus curtisii ATCC 51333]
          Length = 371

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 204/338 (60%), Positives = 265/338 (78%), Gaps = 1/338 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +++KAL+ AL QI + +GKG++M+LG   ++   + V+ +GS+ LD+ALGIGG P+
Sbjct: 1   MAKDERAKALQTALGQIDKQFGKGSVMRLGD-SAVNTNVSVIPTGSVALDVALGIGGLPR 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTT+ALH +A +QK GG  AF+DAEHALD +YA+KLGVD+ NLL+SQ
Sbjct: 60  GRIIEIYGPESSGKTTVALHAVANAQKQGGNAAFIDAEHALDPVYAQKLGVDIDNLLVSQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI DML+RSG +DIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRK+
Sbjct: 120 PDTGEQALEIADMLIRSGGLDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKI 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T ++S +    +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+     
Sbjct: 180 TGALSATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKENGDAV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR K+VKNKMA PF+Q EFDIMYG+GIS  G LIDLGV + IV KSG+WF++   +L
Sbjct: 240 GNRTRAKIVKNKMAPPFRQAEFDIMYGQGISREGGLIDLGVDSGIVTKSGSWFTYGEMQL 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
           GQG+EN + FL +N E++  IE  +    G+  D   +
Sbjct: 300 GQGKENVRKFLVDNPELSAEIEDKILIALGVREDPNAE 337


>gi|83647897|ref|YP_436332.1| recombinase A [Hahella chejuensis KCTC 2396]
 gi|123739862|sp|Q2SBR7|RECA_HAHCH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|83635940|gb|ABC31907.1| recA protein [Hahella chejuensis KCTC 2396]
          Length = 345

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 227/342 (66%), Positives = 277/342 (80%), Gaps = 2/342 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL AALSQI+R +GKGA+M++G Q    E I  VS+GSLGLDIALGIGG P GRIV
Sbjct: 4   NRKKALTAALSQIERQFGKGAVMRMGEQPR--EIIPSVSTGSLGLDIALGIGGLPYGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++Q+ G TCAFVDAEHALD IYA KLGV++  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAEAQRQGKTCAFVDAEHALDPIYAEKLGVNIDQLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGAVD+I+IDSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT S+
Sbjct: 122 EQALEIADMLVRSGAVDVIIIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGSV 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRRVGS+K+ + + GN+T
Sbjct: 182 KQANCLMIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGSVKEGEEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ +F IMYG GI   GE+IDLGVK   VDKSGAW+S+KG ++GQG+
Sbjct: 242 RVKVVKNKVSPPFKQADFQIMYGRGIYRTGEIIDLGVKEGFVDKSGAWYSYKGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
            NS  +L E+ EIA  IE+ +R+          +E  +   +
Sbjct: 302 ANSSRYLEEHPEIAVEIETAIREKLMPKTPVKEKEAPVAPVE 343


>gi|11387040|sp|Q9S660|RECA_BIFBR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|4416209|gb|AAD20261.1| RecA protein [Bifidobacterium breve]
          Length = 392

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 202/332 (60%), Positives = 264/332 (79%), Gaps = 2/332 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
             +  AL+ AL+Q+++ +GKG+ M+LG Q    + +EV+ +GSL LD+ALGIGG PKGRI
Sbjct: 21  PKRKAALDTALAQVEKSFGKGSAMRLGDQP--VQNVEVIPTGSLALDMALGIGGLPKGRI 78

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH +A +QK GG  A++DAEHALD  YARKLGVD  +L++SQPD 
Sbjct: 79  VEIYGPESSGKTTLALHVVANAQKKGGVAAYIDAEHALDPAYARKLGVDTDSLIVSQPDN 138

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 139 GEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGA 198

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++++    +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLDIRR+ ++K+ D   GN+
Sbjct: 199 LAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDIRRIQTLKNGDEAVGNR 258

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PFK  EFD++YGEGIS  G +ID+  +  +V KSG+WF+++G +LGQG
Sbjct: 259 TRVKVVKNKMAPPFKSAEFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTYEGDQLGQG 318

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           RE  + FL++N  I E IE+ ++   GL+  +
Sbjct: 319 REKVRQFLKDNPAITEEIENKVKAEFGLIGSA 350


>gi|188596459|pdb|3CMV|A Chain A, Mechanism Of Homologous Recombination From The Reca-
           SsdnaDSDNA STRUCTURES
 gi|188596460|pdb|3CMV|B Chain B, Mechanism Of Homologous Recombination From The Reca-
           SsdnaDSDNA STRUCTURES
 gi|188596461|pdb|3CMV|C Chain C, Mechanism Of Homologous Recombination From The Reca-
           SsdnaDSDNA STRUCTURES
 gi|188596462|pdb|3CMV|D Chain D, Mechanism Of Homologous Recombination From The Reca-
           SsdnaDSDNA STRUCTURES
 gi|188596463|pdb|3CMV|E Chain E, Mechanism Of Homologous Recombination From The Reca-
           SsdnaDSDNA STRUCTURES
 gi|188596464|pdb|3CMV|F Chain F, Mechanism Of Homologous Recombination From The Reca-
           SsdnaDSDNA STRUCTURES
 gi|188596465|pdb|3CMV|G Chain G, Mechanism Of Homologous Recombination From The Reca-
           SsdnaDSDNA STRUCTURES
 gi|188596466|pdb|3CMV|H Chain H, Mechanism Of Homologous Recombination From The Reca-
           SsdnaDSDNA STRUCTURES
          Length = 1357

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 211/323 (65%), Positives = 274/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 329 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 386

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 387 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 446

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 447 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 506

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 507 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 566

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 567 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 626

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L++N E A+ IE  +R+
Sbjct: 627 ANATAWLKDNPETAKEIEKKVRE 649



 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 211/323 (65%), Positives = 274/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 678 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 735

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 736 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 795

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 796 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 855

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 856 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 915

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 916 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 975

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L++N E A+ IE  +R+
Sbjct: 976 ANATAWLKDNPETAKEIEKKVRE 998



 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 211/323 (65%), Positives = 274/323 (84%), Gaps = 2/323 (0%)

Query: 11   DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
            +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 1028 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 1085

Query: 71   EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
            EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 1086 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 1145

Query: 131  EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
            EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 1146 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 1205

Query: 191  SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 1206 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 1265

Query: 251  RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
            RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 1266 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 1325

Query: 311  ENSKIFLRENIEIAENIESLLRQ 333
             N+  +L++N E A+ IE  +R+
Sbjct: 1326 ANATAWLKDNPETAKEIEKKVRE 1348



 Score =  322 bits (824), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 196/298 (65%), Positives = 253/298 (84%), Gaps = 2/298 (0%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
           G   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G
Sbjct: 5   GEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG 62

Query: 96  GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
            TCAF+DAEHALD IYARKLGVD+ NLL SQPDTGEQALEI D L RSGAVD+IV+DSVA
Sbjct: 63  KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 122

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
           ALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PE
Sbjct: 123 ALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPE 182

Query: 216 TTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275
           TTTGGNALKFY+SVRLDIRR+G++K+ +++ G++TRVKVVKNK+A+PFKQ EF I+YGEG
Sbjct: 183 TTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEG 242

Query: 276 ISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           I+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+ N+  +L++N E A+ IE  +R+
Sbjct: 243 INFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRE 300


>gi|238756255|ref|ZP_04617571.1| hypothetical protein yruck0001_32420 [Yersinia ruckeri ATCC 29473]
 gi|238705510|gb|EEP97911.1| hypothetical protein yruck0001_32420 [Yersinia ruckeri ATCC 29473]
          Length = 356

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 213/352 (60%), Positives = 279/352 (79%), Gaps = 3/352 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKGAIM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGAIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDVVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQN-AGLVADSLLQEPAINTKDDADKDDTDN 361
            N+  +L+EN  IA +I+  LR+       +     PA++  D+A  + ++ 
Sbjct: 304 ANASNYLKENPAIAADIDKKLREMLLSGTGEQGAVTPAVDFADEASDETSEE 355


>gi|1092932|prf||2102240A recA gene
          Length = 352

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 218/350 (62%), Positives = 274/350 (78%), Gaps = 2/350 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE+IDLGV    V+KSGAW+++ G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
            NS  FL +N +IA  +E  +R      A  +         ++ ++ DTD
Sbjct: 302 ANSAKFLADNPDIAATLEKQIRDKLLTPAPDVKAAANREPVEEVEEADTD 351


>gi|322382316|ref|ZP_08056223.1| recombinase A-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153669|gb|EFX46044.1| recombinase A-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 336

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 214/338 (63%), Positives = 270/338 (79%), Gaps = 6/338 (1%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           + QI++ +GKG+IM+LG   S    +E + SGSL LDIALG+GGFP+GRI+EIYGPESSG
Sbjct: 1   MRQIEKQFGKGSIMKLGE--STHNQVETIPSGSLALDIALGVGGFPRGRIIEIYGPESSG 58

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTT+ALH IA+ QKTGG  AF+DAEHALD +YA KLGV++  LL+SQPDTGEQALEI + 
Sbjct: 59  KTTVALHAIAEVQKTGGQAAFIDAEHALDPVYASKLGVNIDELLLSQPDTGEQALEIAEA 118

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           LVRSGAVDII+IDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I++SK I +F
Sbjct: 119 LVRSGAVDIIIIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKSKVIAIF 178

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           INQ+R K+GVMFG+PETT GG ALKFYSSVRLDIRRV SIK  + I GN+TR+KVVKNK+
Sbjct: 179 INQLREKVGVMFGNPETTPGGRALKFYSSVRLDIRRVESIKQGNDIIGNRTRIKVVKNKV 238

Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
           A PFKQ + DIMYGEGIS  G L+D+  +  I++KSGAW+S+   RLGQGREN+K FL+E
Sbjct: 239 APPFKQADVDIMYGEGISKEGSLVDIASEMDIINKSGAWYSYNNDRLGQGRENAKQFLKE 298

Query: 320 NIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           N +I++ IE  +R+ + L        PA+  +++ D +
Sbjct: 299 NPQISQEIEQKIREASNLTTTV----PAVTEEENEDLE 332


>gi|15803214|ref|NP_289246.1| recombinase A [Escherichia coli O157:H7 EDL933]
 gi|25300497|pir||H85917 hypothetical protein recA [imported] - Escherichia coli  (strain
           O157:H7, substrain EDL933)
 gi|12517139|gb|AAG57804.1|AE005498_5 DNA strand exchange and renaturation, DNA-dependent ATPase, DNA-
           and ATP-dependent coprotease [Escherichia coli O157:H7
           str. EDL933]
          Length = 353

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 211/348 (60%), Positives = 282/348 (81%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAV++IV+DSVAALTP+AEIE ++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVNVIVVDSVAALTPKAEIEXEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            N+  +L++N E A+ IE  +R+      +S       +++  A+ ++
Sbjct: 304 ANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVAETNE 351


>gi|289449615|ref|YP_003474954.1| protein RecA [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184162|gb|ADC90587.1| protein RecA [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 383

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 204/357 (57%), Positives = 274/357 (76%), Gaps = 5/357 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K +   +++KALE AL +I+  +GKG+IM+LG Q      +  +S+G+L LDIALG+GG 
Sbjct: 15  KPIAQNERAKALEIALDKIEEQFGKGSIMKLGEQSDT--DVRAISTGALALDIALGVGGL 72

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GRIVEIYGPESSGKTT+ALH IA++QKTGGT AFVDAEHALD IYA  LGV++  LL+
Sbjct: 73  PRGRIVEIYGPESSGKTTVALHCIAEAQKTGGTAAFVDAEHALDPIYAEHLGVNIDELLV 132

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGE+ALEIT+ LVRSGAVDIIVIDSVAAL P+AEI+G+MG+S  G+ ARLMSQALR
Sbjct: 133 SQPDTGEEALEITEALVRSGAVDIIVIDSVAALVPKAEIDGEMGDSHVGLHARLMSQALR 192

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KL   IS+S+ +++FINQ+R K+GV++GSPE TTGG ALKFY+SVR+D+R+  +IK+   
Sbjct: 193 KLAGIISKSQTVVIFINQLRDKVGVVYGSPEVTTGGRALKFYASVRIDVRKGETIKNGSD 252

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + GN+T++KVVKNKMA PF++ EFDI++GEGIS  G ++D+     IV +SG WFS+   
Sbjct: 253 LIGNRTKIKVVKNKMAPPFREAEFDILFGEGISREGSILDVATTLGIVKRSGTWFSYNDL 312

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           RLGQGR+N++ +L+EN ++   I+  +R++     +S  +  A  T DD    +T N
Sbjct: 313 RLGQGRDNARTYLKENKDLCNEIDQAVRESLH---NSNHKTTAETTGDDDHPGETAN 366


>gi|260881781|ref|ZP_05405213.2| protein RecA [Mitsuokella multacida DSM 20544]
 gi|260847875|gb|EEX67882.1| protein RecA [Mitsuokella multacida DSM 20544]
          Length = 370

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 214/365 (58%), Positives = 272/365 (74%), Gaps = 5/365 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   K+     K +ALE AL +I++ +GKG+IM+LG        IEV+ +G L LDIALG
Sbjct: 7   MAADKK-EAASKQEALENALKKIEKDFGKGSIMRLGD-AKAHMDIEVIPTGILPLDIALG 64

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG P+GRI+E+YGPESSGKTT+ LH IA++QK GG  AF+DAEHALD +YA KLGV++ 
Sbjct: 65  VGGIPRGRIIEVYGPESSGKTTVTLHMIAEAQKNGGIAAFIDAEHALDPVYAAKLGVNID 124

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +LLISQPDTGEQAL+I D LVRSGA+DIIV+DSVAAL P+AEIEGDMG+S  G+QARLMS
Sbjct: 125 DLLISQPDTGEQALDIVDALVRSGAIDIIVVDSVAALVPKAEIEGDMGDSHVGLQARLMS 184

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKLT  I++S+   +FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+R++ +IK
Sbjct: 185 QAMRKLTGIIAKSRTAAIFINQIREKVGVMFGNPETTTGGRALKFYSSVRLDVRKIDTIK 244

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
               + GN+TR+KVVKNK+A PF+  EFDIMYGEG+S    +ID+GV   IVDKSGAWFS
Sbjct: 245 QGQDVIGNRTRIKVVKNKVAPPFRTAEFDIMYGEGVSRLSSIIDMGVDLDIVDKSGAWFS 304

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNA---GLVADSLLQEPAINTKDDADKD 357
           + G RLGQG+EN+K  LR+   I E IE+ +R          DSL Q  A   ++  +  
Sbjct: 305 YNGTRLGQGKENAKQSLRDQPAICEEIEAKIRAKLLENPEAGDSLKQAEAEAEREQGEGA 364

Query: 358 DTDNV 362
             D+ 
Sbjct: 365 PADDE 369


>gi|220934461|ref|YP_002513360.1| recA protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|254790455|sp|B8GQV3|RECA_THISH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|219995771|gb|ACL72373.1| recA protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 343

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 221/341 (64%), Positives = 278/341 (81%), Gaps = 1/341 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL AAL QI+R +GKGA+M++G   ++   +E +S+GSL LDIALGIGG PKGR+V
Sbjct: 4   NRKKALSAALGQIERQFGKGAVMRMGDSTAVR-DVEAISTGSLALDIALGIGGLPKGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAECQKQGGTAAFVDAEHALDPGYAEKLGVNVDDLLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGAVD++V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKLT++I
Sbjct: 123 EQALEIADMLVRSGAVDVVVVDSVAALTPKAEIEGEMGDAHVGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK  D + GN+T
Sbjct: 183 KRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKKGDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF+I+YGEGIS  GE+ID+GV+  IVDKSGAW+S+ G+R+GQG+
Sbjct: 243 RVKVVKNKVAPPFKQAEFEILYGEGISRLGEVIDIGVQDGIVDKSGAWYSYNGERIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           +N++ FL+E+ E+A  IE  +R+       +   E      
Sbjct: 303 DNARTFLKEHPEMAGEIERQIREKHLPKRSAKADEAESAEA 343


>gi|188596458|pdb|3CMU|A Chain A, Mechanism Of Homologous Recombination From The Reca-
            SsdnaDSDNA STRUCTURES
          Length = 2050

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 213/333 (63%), Positives = 276/333 (82%), Gaps = 2/333 (0%)

Query: 1    MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
            M  R      +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG
Sbjct: 1363 MSGRMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALG 1420

Query: 61   IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
             GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ 
Sbjct: 1421 AGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDID 1480

Query: 121  NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            NLL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MS
Sbjct: 1481 NLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMS 1540

Query: 181  QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
            QA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K
Sbjct: 1541 QAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK 1600

Query: 241  DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
            + +++ G++TRVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S
Sbjct: 1601 EGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYS 1660

Query: 301  FKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
            +KG+++GQG+ N+  +L++N E A+ IE  +R+
Sbjct: 1661 YKGEKIGQGKANATAWLKDNPETAKEIEKKVRE 1693



 Score =  371 bits (952), Expect = e-101,   Method: Composition-based stats.
 Identities = 211/323 (65%), Positives = 274/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 329 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 386

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 387 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 446

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 447 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 506

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 507 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 566

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 567 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 626

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L++N E A+ IE  +R+
Sbjct: 627 ANATAWLKDNPETAKEIEKKVRE 649



 Score =  371 bits (952), Expect = e-101,   Method: Composition-based stats.
 Identities = 211/323 (65%), Positives = 274/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 678 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 735

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 736 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 795

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 796 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 855

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 856 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 915

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 916 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 975

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L++N E A+ IE  +R+
Sbjct: 976 ANATAWLKDNPETAKEIEKKVRE 998



 Score =  371 bits (952), Expect = e-101,   Method: Composition-based stats.
 Identities = 211/323 (65%), Positives = 274/323 (84%), Gaps = 2/323 (0%)

Query: 11   DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
            +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 1027 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 1084

Query: 71   EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
            EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 1085 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 1144

Query: 131  EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
            EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 1145 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 1204

Query: 191  SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 1205 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 1264

Query: 251  RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
            RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 1265 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 1324

Query: 311  ENSKIFLRENIEIAENIESLLRQ 333
             N+  +L++N E A+ IE  +R+
Sbjct: 1325 ANATAWLKDNPETAKEIEKKVRE 1347



 Score =  371 bits (952), Expect = e-101,   Method: Composition-based stats.
 Identities = 211/323 (65%), Positives = 274/323 (84%), Gaps = 2/323 (0%)

Query: 11   DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
            +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 1721 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 1778

Query: 71   EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
            EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 1779 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 1838

Query: 131  EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
            EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 1839 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 1898

Query: 191  SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 1899 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 1958

Query: 251  RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
            RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 1959 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 2018

Query: 311  ENSKIFLRENIEIAENIESLLRQ 333
             N+  +L++N E A+ IE  +R+
Sbjct: 2019 ANATAWLKDNPETAKEIEKKVRE 2041



 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 196/299 (65%), Positives = 254/299 (84%), Gaps = 2/299 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           +G   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ 
Sbjct: 4   MGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 61

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTGEQALEI D L RSGAVD+IV+DSV
Sbjct: 62  GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSV 121

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+P
Sbjct: 122 AALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNP 181

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           ETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++TRVKVVKNK+A+PFKQ EF I+YGE
Sbjct: 182 ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGE 241

Query: 275 GISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           GI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+ N+  +L++N E A+ IE  +R+
Sbjct: 242 GINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRE 300


>gi|116119170|gb|ABJ74755.1| RecA [Burkholderia sp. R419]
          Length = 347

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 231/331 (69%), Positives = 287/331 (86%), Gaps = 1/331 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI+  +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 2   TAEKSKALAAALAQIEEQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 121 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 241 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           G++N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 301 GKDNAREFLRENPEIAREIENRIRESLGVVA 331


>gi|319948417|ref|ZP_08022556.1| recombinase A [Dietzia cinnamea P4]
 gi|319437921|gb|EFV92902.1| recombinase A [Dietzia cinnamea P4]
          Length = 367

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 205/353 (58%), Positives = 268/353 (75%), Gaps = 2/353 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K     ++ +ALE AL+QI + YGKG++M+LG        ++V+ SG+L LD+ALG+GGF
Sbjct: 11  KPGAAQNREQALELALAQIDKAYGKGSVMRLGDDTR--PPVQVIPSGALSLDVALGVGGF 68

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GR+VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YARKLGVD  NL++
Sbjct: 69  PRGRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYARKLGVDTDNLIV 128

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI DMLV+SGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALR
Sbjct: 129 SQPDTGEQALEIADMLVKSGAIDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 188

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           K+T ++  +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD   
Sbjct: 189 KMTGALHNTGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGAD 248

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
             GN+T+VKVVKNK+A PFK  EFDI+YGEGIS  G LID+GV    + KSG+WF++   
Sbjct: 249 AVGNRTKVKVVKNKVAPPFKIAEFDILYGEGISREGSLIDMGVDNGFIKKSGSWFTYGQD 308

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           +LGQG+EN++ +L++N  + + IE  +     + A + + E    + +DA  D
Sbjct: 309 QLGQGKENARRYLKDNPSVRDEIERKILDKLNIGAGAEIAEIEAESDEDAPID 361


>gi|295097278|emb|CBK86368.1| RecA protein [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 352

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 214/351 (60%), Positives = 283/351 (80%), Gaps = 6/351 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  +A +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVVAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFLGELVDLGVKEKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
            N+  +L+EN   A+ IE  +R+   L+ ++   +P     D AD ++T+ 
Sbjct: 304 ANAISWLKENPAAAKEIEKKVRE---LLLNNQDSKPDF-VVDGADAEETNE 350


>gi|311693939|gb|ADP96812.1| recombinase A [marine bacterium HP15]
          Length = 348

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 220/350 (62%), Positives = 278/350 (79%), Gaps = 7/350 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL AAL QI+R +GKGA+M++G Q    E I  VS+GSLGLD+ALGIGG P GRI 
Sbjct: 4   NRKKALSAALGQIERQFGKGAVMKMGDQPR--EAIPAVSTGSLGLDVALGIGGLPYGRIC 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD +YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAEAQKAGKTCAFVDAEHALDPVYAEKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS AVD+I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT ++
Sbjct: 122 EQALEIADMLVRSNAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNV 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++KD D + GN+T
Sbjct: 182 KHANCLMIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKDGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EF IMYG+GI    E++D+GVK   VDKSGAW+++ G ++GQG+
Sbjct: 242 RVKVVKNKVSPPFKQAEFQIMYGKGIYHMAEVLDMGVKEGFVDKSGAWYAYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
            N+  FL EN++IA  IE+ +R            EP  + K++  + + +
Sbjct: 302 ANACKFLEENMDIANEIEAKVRDKL-----MPKPEPRKDAKEEPAEANGE 346


>gi|154686111|ref|YP_001421272.1| recombinase A [Bacillus amyloliquefaciens FZB42]
 gi|166199598|sp|A7Z4W5|RECA_BACA2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|52545495|emb|CAH56426.1| RecA protein [Bacillus amyloliquefaciens FZB42]
 gi|154351962|gb|ABS74041.1| RecA [Bacillus amyloliquefaciens FZB42]
          Length = 347

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 207/337 (61%), Positives = 269/337 (79%), Gaps = 2/337 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG +      I  V SGSL LD ALGIGG+P+GR
Sbjct: 1   MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTR--ISTVPSGSLALDTALGIGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT+ALH IA+ Q+ GG  AF+DAEHALD +YA+KLGV+++ LL+SQPD
Sbjct: 59  IIEVYGPESSGKTTVALHAIAEVQEKGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDI+V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K  + + GN
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TR+KVVKNK+A PF+  E DIMYGEGIS  GE+IDLG +  IV KSG+W+S++ +RLGQ
Sbjct: 239 KTRIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           GREN+K FL+EN +I   I+  +R+  GL  + +  +
Sbjct: 299 GRENAKQFLKENKDIMLMIQEQIREYYGLDNNGVTDK 335


>gi|42522117|ref|NP_967497.1| recombinase A [Bdellovibrio bacteriovorus HD100]
 gi|60392991|sp|P62212|RECA_BDEBA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|39574648|emb|CAE78490.1| RecA protein [Bdellovibrio bacteriovorus HD100]
          Length = 377

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 225/358 (62%), Positives = 285/358 (79%), Gaps = 2/358 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
                +K KALE A+S I++ +GKG+IM+LG+  S+ + +E +S+G+L LDIALGIGG P
Sbjct: 8   NKANSEKIKALELAVSTIEKQFGKGSIMRLGANESLVKDVEAISTGALSLDIALGIGGLP 67

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRI EIYGPESSGKTTL L  IAQ+QK GG  AFVDAEHALD  YARKLGV+ ++LLIS
Sbjct: 68  KGRICEIYGPESSGKTTLCLSVIAQAQKKGGVVAFVDAEHALDINYARKLGVNTEDLLIS 127

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEIT+ LVRSGA+D++V+DSVAAL PRAEIEGDMG+S  G+QARLMSQALRK
Sbjct: 128 QPDTGEQALEITETLVRSGAIDVLVVDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRK 187

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT++I+RS  +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLD+RRVG+IK+ + +
Sbjct: 188 LTAAINRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDVRRVGAIKNGEDV 247

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           TGN+T VKVVKNKMA PF +VEFD+MYGEGIS  G+L+DL V A++V+KSGAWFS  G+R
Sbjct: 248 TGNRTAVKVVKNKMAPPFTKVEFDLMYGEGISEEGDLLDLAVTANMVEKSGAWFSINGER 307

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           +GQGR+ +K FL+E+ E    +   +    G+    LL +   N  +D +  +   +E
Sbjct: 308 MGQGRDAAKNFLKEHPEYMVELRKKILAANGIG--KLLVDTNGNNGEDHEGTEPVEIE 363


>gi|308212802|gb|ADO21629.1| RecA [Burkholderia arboris]
 gi|308212804|gb|ADO21630.1| RecA [Burkholderia arboris]
 gi|308212806|gb|ADO21631.1| RecA [Burkholderia arboris]
          Length = 319

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 223/318 (70%), Positives = 277/318 (87%), Gaps = 1/318 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LV
Sbjct: 60  TLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FIN
Sbjct: 120 RSGSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ 
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN 
Sbjct: 240 PFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENP 299

Query: 322 EIAENIESLLRQNAGLVA 339
           EIA  IE+ +R++ G+V+
Sbjct: 300 EIAREIENRIRESLGVVS 317


>gi|87122443|ref|ZP_01078323.1| RecA protein [Marinomonas sp. MED121]
 gi|86162236|gb|EAQ63521.1| RecA protein [Marinomonas sp. MED121]
          Length = 356

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 231/357 (64%), Positives = 285/357 (79%), Gaps = 4/357 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD +  +   +K KAL+AALSQI+R +GKGAIM++G +    E I  VS+GSLGLDIALG
Sbjct: 2   MDSK--VTESNKKKALDAALSQIERQFGKGAIMKMGDKPR--EAIPSVSTGSLGLDIALG 57

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG P GR +E+YGPESSGKTTL L TIAQ+QK G TCAF+DAEHALD IYA KLGV+L 
Sbjct: 58  IGGLPLGRCIELYGPESSGKTTLTLSTIAQAQKQGYTCAFIDAEHALDPIYAEKLGVNLD 117

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPDTGEQALEI DMLVRS AV++IVIDSVAALTP++EIEG+MG+S  G+QARLMS
Sbjct: 118 ELLLSQPDTGEQALEICDMLVRSNAVNLIVIDSVAALTPKSEIEGNMGDSHVGLQARLMS 177

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT +   + C++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GS+K
Sbjct: 178 QALRKLTGAAKNANCMIVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVK 237

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             D + GN+TRVKVVKNK++ PF+Q EF IMYG GI   GE+IDLGVK  +VDKSGAW++
Sbjct: 238 QGDEVVGNETRVKVVKNKVSPPFRQAEFQIMYGAGIYHMGEIIDLGVKQGLVDKSGAWYA 297

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           +KG ++GQG+ N+  +L +NI+IA  IE+ +R+       +   E +  TK++  KD
Sbjct: 298 YKGAKIGQGKANAAKYLEDNIDIANEIEAEIRKQLIQTTTNKEAEESKATKEEVQKD 354


>gi|188596455|pdb|3CMT|A Chain A, Mechanism Of Homologous Recombination From The Reca-
           SsdnaDSDNA STRUCTURES
 gi|188596456|pdb|3CMT|D Chain D, Mechanism Of Homologous Recombination From The Reca-
           SsdnaDSDNA STRUCTURES
 gi|188596469|pdb|3CMW|A Chain A, Mechanism Of Homologous Recombination From The Reca-
           SsdnaDSDNA STRUCTURES
 gi|188596470|pdb|3CMW|C Chain C, Mechanism Of Homologous Recombination From The Reca-
           SsdnaDSDNA STRUCTURES
 gi|188596475|pdb|3CMX|A Chain A, Mechanism Of Homologous Recombination From The Reca-
           SsdnaDSDNA STRUCTURES
 gi|188596476|pdb|3CMX|D Chain D, Mechanism Of Homologous Recombination From The Reca-
           SsdnaDSDNA STRUCTURES
          Length = 1706

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 211/323 (65%), Positives = 274/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 329 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 386

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 387 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 446

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 447 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 506

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 507 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 566

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 567 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 626

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L++N E A+ IE  +R+
Sbjct: 627 ANATAWLKDNPETAKEIEKKVRE 649



 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 211/323 (65%), Positives = 274/323 (84%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 678 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 735

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 736 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 795

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 796 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 855

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 856 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 915

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 916 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 975

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L++N E A+ IE  +R+
Sbjct: 976 ANATAWLKDNPETAKEIEKKVRE 998



 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 211/323 (65%), Positives = 274/323 (84%), Gaps = 2/323 (0%)

Query: 11   DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
            +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 1028 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 1085

Query: 71   EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
            EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 1086 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 1145

Query: 131  EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
            EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 1146 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 1205

Query: 191  SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 1206 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 1265

Query: 251  RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
            RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 1266 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 1325

Query: 311  ENSKIFLRENIEIAENIESLLRQ 333
             N+  +L++N E A+ IE  +R+
Sbjct: 1326 ANATAWLKDNPETAKEIEKKVRE 1348



 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 211/323 (65%), Positives = 274/323 (84%), Gaps = 2/323 (0%)

Query: 11   DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
            +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 1377 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 1434

Query: 71   EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
            EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG
Sbjct: 1435 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 1494

Query: 131  EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
            EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 1495 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 1554

Query: 191  SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T
Sbjct: 1555 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 1614

Query: 251  RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
            RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+
Sbjct: 1615 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 1674

Query: 311  ENSKIFLRENIEIAENIESLLRQ 333
             N+  +L++N E A+ IE  +R+
Sbjct: 1675 ANATAWLKDNPETAKEIEKKVRE 1697



 Score =  322 bits (824), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 196/298 (65%), Positives = 253/298 (84%), Gaps = 2/298 (0%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
           G   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G
Sbjct: 5   GEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG 62

Query: 96  GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
            TCAF+DAEHALD IYARKLGVD+ NLL SQPDTGEQALEI D L RSGAVD+IV+DSVA
Sbjct: 63  KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 122

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
           ALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PE
Sbjct: 123 ALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPE 182

Query: 216 TTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275
           TTTGGNALKFY+SVRLDIRR+G++K+ +++ G++TRVKVVKNK+A+PFKQ EF I+YGEG
Sbjct: 183 TTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEG 242

Query: 276 ISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           I+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+ N+  +L++N E A+ IE  +R+
Sbjct: 243 INFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRE 300


>gi|188586099|ref|YP_001917644.1| RecA protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350786|gb|ACB85056.1| RecA protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 364

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 204/342 (59%), Positives = 269/342 (78%), Gaps = 1/342 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           ++K KAL+ ALSQI++ +GKG+IM+LG   +    +EV+ +G+L LDIALGIGG P+GR+
Sbjct: 1   MEKQKALDMALSQIEKQFGKGSIMKLGESNAKMN-VEVIPTGALSLDIALGIGGLPRGRV 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VE+YGPESSGKTT+ALH +A++QK GG  AF+DAEHALD  YAR LGV++  LL+SQPDT
Sbjct: 60  VEVYGPESSGKTTVALHAVAEAQKNGGNAAFIDAEHALDPAYARNLGVNIDELLVSQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + LVRSGA+D+IV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ S
Sbjct: 120 GEQALEIAESLVRSGAIDVIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I +S+   VFINQ+R K+GVMFG+PETT GG ALKFYSSVR+++RR+ S+K  + I GN+
Sbjct: 180 IRKSRTTAVFINQIREKVGVMFGNPETTPGGRALKFYSSVRIEVRRIESLKKGNDIIGNR 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TR KVVKNK+A PFK+ EFDIMYGEGIS    ++DL  + +IV KSG W+S+   RLGQG
Sbjct: 240 TRGKVVKNKVAPPFKKAEFDIMYGEGISKESNILDLASELNIVTKSGPWYSYGEDRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           +EN++ +LR+N +IAE IE  +  N  L  ++   +   + +
Sbjct: 300 KENARNYLRDNPDIAEAIELQILDNYNLGTNNQQDQGQESEE 341


>gi|150016100|ref|YP_001308354.1| recombinase A [Clostridium beijerinckii NCIMB 8052]
 gi|172046855|sp|P42441|RECA_CLOB8 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|149902565|gb|ABR33398.1| recA protein [Clostridium beijerinckii NCIMB 8052]
          Length = 361

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 212/345 (61%), Positives = 273/345 (79%), Gaps = 2/345 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +K KA+E+A+S I++ +GKG++M+LG        ++ +S+G L LDIALGIGG PKGR
Sbjct: 5   NAEKLKAIESAMSHIEKQFGKGSVMKLGDHN--ISNMDAISTGCLDLDIALGIGGVPKGR 62

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTT+ALH  A+SQK GG   ++DAEHALD  YA+KLGVD+ +L+ISQPD
Sbjct: 63  IIEIYGPESSGKTTIALHIAAESQKKGGAVGYIDAEHALDPSYAQKLGVDVDSLIISQPD 122

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQ LEI + LVRSGA+D++V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL  
Sbjct: 123 TGEQGLEIAEALVRSGAIDVLVVDSVAALVPKAEIEGEMGDSHIGLQARLMSQALRKLAG 182

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I+++ C+ +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLDIRR+ SIK  DSI GN
Sbjct: 183 TINKTNCVAIFINQLREKVGVMFGSPETTTGGRALKFYASVRLDIRRIDSIKQGDSIIGN 242

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TR+KV+KNK+A PFKQ EFDIMY EGIS  G ++D+GVK  IV KSGAWFS+   RLGQ
Sbjct: 243 RTRIKVMKNKVAPPFKQAEFDIMYNEGISRCGNIVDVGVKEEIVQKSGAWFSYGDIRLGQ 302

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           GREN+K++L+EN E+A +IE+ +R+   L    L +  A     +
Sbjct: 303 GRENAKLYLKENPEVALDIENQIREKYNLPPAELFKAAAPEGAKE 347


>gi|310287748|ref|YP_003939006.1| RecA protein [Bifidobacterium bifidum S17]
 gi|311064634|ref|YP_003971359.1| protein RecA [Bifidobacterium bifidum PRL2010]
 gi|309251684|gb|ADO53432.1| RecA protein [Bifidobacterium bifidum S17]
 gi|310866953|gb|ADP36322.1| RecA protein [Bifidobacterium bifidum PRL2010]
          Length = 396

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 205/351 (58%), Positives = 271/351 (77%), Gaps = 4/351 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL++AL Q+++ +GKG+ M+LG +    + +EV+ +GSL LD+ALGIGG PKGRIVE
Sbjct: 37  RKAALDSALEQVEKSFGKGSAMRLGDKPE--QNVEVIPTGSLALDLALGIGGLPKGRIVE 94

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH +A +QK GG  AF+DAEHALD +YAR LGVD  +L++SQPD GE
Sbjct: 95  IYGPESSGKTTLALHVVANAQKNGGVAAFIDAEHALDPVYARHLGVDTDSLIVSQPDNGE 154

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DML+RSGA+D+IVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRK+T +++
Sbjct: 155 QALEIADMLIRSGALDVIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKMTGALA 214

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLDIRR+ +IK+ +   GN+T+
Sbjct: 215 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDIRRIQTIKNGEEAVGNRTK 274

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNKMA PFK  EFD++YGEGIS  G ++D+ ++ ++V KSG+WF++ G +LGQGRE
Sbjct: 275 VKVVKNKMAPPFKSAEFDVLYGEGISKEGSVLDMALQCNVVKKSGSWFTYDGDQLGQGRE 334

Query: 312 NSKIFLRENIEIAENIESLLRQNAGL--VADSLLQEPAINTKDDADKDDTD 360
           N + FL++N +I E I + ++   GL  V D L    +    D  +    D
Sbjct: 335 NVRKFLKDNPQITEEIGNKVKAEFGLIEVPDQLADGESATDGDAPETAPED 385


>gi|67906614|gb|AAY82716.1| predicted recombination protein RecA [uncultured bacterium]
          Length = 370

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 231/360 (64%), Positives = 297/360 (82%), Gaps = 2/360 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
              K++   +K+KAL+AA+SQI   +GKG++M+LG + ++   IE + +GSL LD+ALGI
Sbjct: 12  AKDKDLENKEKNKALDAAISQITDNFGKGSVMKLGQKKAM--DIESIFTGSLSLDLALGI 69

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GGFPKGRIVEIYGPESSGKTTLAL  +A++QK+GG CAFVDAEHALD +YA+KLGV+ + 
Sbjct: 70  GGFPKGRIVEIYGPESSGKTTLALQVVAEAQKSGGICAFVDAEHALDPVYAKKLGVNTEE 129

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLISQPD GEQALEI D LV+SG++ +IVIDSVAALTPRAEIEGDMG+   G+Q+RLMSQ
Sbjct: 130 LLISQPDAGEQALEIADTLVKSGSISVIVIDSVAALTPRAEIEGDMGDHHVGLQSRLMSQ 189

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLTSSIS +  +++FINQ+RMKIGVMFGSPETT+GGNALKFYSSVR+DIRR+G+IKD
Sbjct: 190 ALRKLTSSISNTNTMMIFINQIRMKIGVMFGSPETTSGGNALKFYSSVRMDIRRIGAIKD 249

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
           KD+I GN TRVKVVKNK++ PFK VEFD+MYG+GIS  GELIDLG KA IV+KSGAW+++
Sbjct: 250 KDAIIGNSTRVKVVKNKVSPPFKVVEFDLMYGKGISKVGELIDLGAKAEIVEKSGAWYAY 309

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           KG+++GQGREN+KI+L +N ++A  IE  +R+ AG++   +   P    K+ ++    D+
Sbjct: 310 KGEKIGQGRENAKIYLEQNPKVAAEIEMAIREKAGVITKKIEGNPLDQEKNRSEPKRRDS 369


>gi|91785109|ref|YP_560315.1| recombinase A [Burkholderia xenovorans LB400]
 gi|296157299|ref|ZP_06840135.1| recA protein [Burkholderia sp. Ch1-1]
 gi|29788007|emb|CAD67591.1| RecA protein [Burkholderia fungorum]
 gi|91689063|gb|ABE32263.1| RecA DNA recombination protein [Burkholderia xenovorans LB400]
 gi|295892635|gb|EFG72417.1| recA protein [Burkholderia sp. Ch1-1]
          Length = 358

 Score =  371 bits (952), Expect = e-101,   Method: Composition-based stats.
 Identities = 228/350 (65%), Positives = 298/350 (85%), Gaps = 3/350 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG++M+LG  G + E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 12  TAEKSKALAAALAQIEKQFGKGSVMRLG-AGEVIEDIQVVSTGSLGLDIALGVGGLPRGR 70

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPD
Sbjct: 71  VVEIYGPESSGKTTLTLQVIAEMQKIGGTAAFIDAEHALDIQYASKLGVNVNDLLVSQPD 130

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 131 TGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 190

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 191 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 250

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQ
Sbjct: 251 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYSGERIGQ 310

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN +IA  IE+ +R++ G+  +++ +   + + + AD+++
Sbjct: 311 GKDNAREFLRENPDIAREIENRIRESLGV--NAMAEAATVASAEVADEEE 358


>gi|168184610|ref|ZP_02619274.1| recA protein [Clostridium botulinum Bf]
 gi|237795840|ref|YP_002863392.1| recombinase A [Clostridium botulinum Ba4 str. 657]
 gi|182672301|gb|EDT84262.1| recA protein [Clostridium botulinum Bf]
 gi|229261898|gb|ACQ52931.1| recA protein [Clostridium botulinum Ba4 str. 657]
 gi|322806670|emb|CBZ04239.1| reca protein [Clostridium botulinum H04402 065]
          Length = 355

 Score =  371 bits (952), Expect = e-101,   Method: Composition-based stats.
 Identities = 219/356 (61%), Positives = 277/356 (77%), Gaps = 2/356 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M         +K KA+EAA+ QI++ +GKG+IM+LG    +   +E +S+GSL LDIALG
Sbjct: 1   MSVLANKVNPEKLKAIEAAMGQIEKQFGKGSIMKLGEDSIL--NVESISTGSLDLDIALG 58

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG P+GRI+EI+GPESSGKTT+ALH +A++QK GG  AF+DAEHALD  YAR LGVD+ 
Sbjct: 59  IGGVPRGRIIEIFGPESSGKTTVALHILAEAQKIGGAAAFIDAEHALDPSYARNLGVDID 118

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL++SQPDTGEQALEIT+ LVRSGAVD+IV+DSVAAL PRAEIEG+MG+S  G+QARLMS
Sbjct: 119 NLIVSQPDTGEQALEITEALVRSGAVDVIVVDSVAALVPRAEIEGEMGDSHVGLQARLMS 178

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKL  SI++SKC+ +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+RR+ SIK
Sbjct: 179 QALRKLAGSINKSKCVAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRRIDSIK 238

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             D I GN+TRVK+ KNK+A PFK  EFDIMY EGIS  G ++D+GV+  +VDKSG+WFS
Sbjct: 239 QGDQILGNRTRVKINKNKVAPPFKMAEFDIMYNEGISKVGNILDVGVREELVDKSGSWFS 298

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           +K  RLGQGREN+K FL++N+ IA  IE+ +R+   L           N K+D  +
Sbjct: 299 YKDTRLGQGRENAKQFLKDNMNIALEIENTIRKKHDLPVVDAKNLNIENKKEDNKE 354


>gi|59711142|ref|YP_203918.1| recombinase A [Vibrio fischeri ES114]
 gi|197334505|ref|YP_002155292.1| protein RecA [Vibrio fischeri MJ11]
 gi|76363346|sp|Q5E7G6|RECA_VIBF1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226726299|sp|B5FAD0|RECA_VIBFM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|59479243|gb|AAW85030.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Vibrio fischeri ES114]
 gi|197315995|gb|ACH65442.1| protein RecA [Vibrio fischeri MJ11]
          Length = 348

 Score =  371 bits (952), Expect = e-101,   Method: Composition-based stats.
 Identities = 212/346 (61%), Positives = 276/346 (79%), Gaps = 2/346 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E VS+GSL LDIALG GG P GRIV
Sbjct: 4   NKKKALAAALGQIEKQFGKGSIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTG
Sbjct: 62  EIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAVDVMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+T
Sbjct: 182 KQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ E  IMYG+G +  GELIDLGVK  +VDK+GAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKQAETQIMYGQGFNREGELIDLGVKHKLVDKAGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
            N+  F+REN E+A  ++  LR+     A+   +  A    ++ ++
Sbjct: 302 ANASKFMRENTEVAAELDKKLREMLLTPAEEKPETDAAPEIEENEE 347


>gi|30141704|emb|CAD82858.2| RecA protein [Burkholderia fungorum]
          Length = 349

 Score =  371 bits (952), Expect = e-101,   Method: Composition-based stats.
 Identities = 227/331 (68%), Positives = 286/331 (86%), Gaps = 1/331 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG++M+LG  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 10  TAEKSKALAAALAQIEKQFGKGSVMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLPRGR 68

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPD
Sbjct: 69  VVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPD 128

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 129 TGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 188

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 189 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 248

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQ
Sbjct: 249 ETRVKVVKNKVAPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQ 308

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           G++N++ FLREN +IA  IE+ +R++ G+ A
Sbjct: 309 GKDNAREFLRENPDIAREIENRIRESLGVNA 339


>gi|187935438|ref|YP_001885485.1| recombinase A [Clostridium botulinum B str. Eklund 17B]
 gi|238691622|sp|B2TJ69|RECA_CLOBB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|187723591|gb|ACD24812.1| protein RecA [Clostridium botulinum B str. Eklund 17B]
          Length = 356

 Score =  371 bits (952), Expect = e-101,   Method: Composition-based stats.
 Identities = 217/352 (61%), Positives = 279/352 (79%), Gaps = 3/352 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           ++K KA+E A+ QI++ +GKG++M+LG    +   I+ +S+G L LDIALGIGG PKGRI
Sbjct: 6   INKLKAIENAMGQIEKQFGKGSVMKLGENSVL--NIDAISTGCLDLDIALGIGGVPKGRI 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH  A++QK GG   F+DAEHALD  YAR LGVD +NL++SQPDT
Sbjct: 64  VEIYGPESSGKTTIALHIAAEAQKKGGAVGFIDAEHALDPSYARNLGVDTENLIVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQ LEI + LVRSGA+D+I++DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL  +
Sbjct: 124 GEQGLEIAEALVRSGAIDVIIVDSVAALVPKAEIEGEMGDSHIGLQARLMSQALRKLAGT 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS++ CI +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLD+RR+ SIK  D I GN+
Sbjct: 184 ISKTNCIAIFINQLREKVGVMFGSPETTTGGRALKFYASVRLDVRRIDSIKQGDGIVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TR+KV KNK+A PFKQ EFDIMY EGIS  G ++D+GVK  IV KSGAWFS+   RLGQG
Sbjct: 244 TRIKVTKNKVAPPFKQAEFDIMYNEGISRQGNIVDVGVKEEIVQKSGAWFSYGDIRLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL-VADSLLQEPAINTKDDADKDDTD 360
           REN+K +L+EN E+A +IE+ +R+   L + D++++E A       +K+ +D
Sbjct: 304 RENAKQYLKENPEVALDIENQIREKHNLPLMDAVIKETAQEVNGKENKEQSD 355


>gi|227504860|ref|ZP_03934909.1| recombination protein RecA [Corynebacterium striatum ATCC 6940]
 gi|227198551|gb|EEI78599.1| recombination protein RecA [Corynebacterium striatum ATCC 6940]
          Length = 377

 Score =  371 bits (952), Expect = e-101,   Method: Composition-based stats.
 Identities = 212/351 (60%), Positives = 269/351 (76%), Gaps = 2/351 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+AA++ I++ +GKGA+M+LG        I+ +SSG+  +DIALGIGGFP+GRIV
Sbjct: 16  DRQKALDAAMAMIEKDFGKGAVMRLGDDER--PPIQAISSGNTAIDIALGIGGFPRGRIV 73

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA +QK GG  AF+DAEHALD  YAR LGVD  NLL+SQPDTG
Sbjct: 74  EIYGPESSGKTTVALHAIASAQKDGGIAAFIDAEHALDPEYARLLGVDTDNLLVSQPDTG 133

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DIIVIDSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 134 EQALEIADMLVRSGAIDIIVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 193

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR DIRR+ ++KD     GN+T
Sbjct: 194 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRIQTLKDGQDAIGNRT 253

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++K+VKNK++ PFK  EFDIMYGEGIS    +IDLGV+   + KSG+WF+++G +LGQG+
Sbjct: 254 KIKIVKNKVSPPFKIAEFDIMYGEGISRESSIIDLGVEHGFIKKSGSWFTYEGDQLGQGK 313

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           E ++ FL+EN ++A+ IE  +    G+ + +   E        AD   TD 
Sbjct: 314 EKARNFLKENKDLADEIEKKIFNKLGIGSGATTDEDIPMDVPGADDPLTDE 364


>gi|313619006|gb|EFR90835.1| protein RecA [Listeria innocua FSL S4-378]
          Length = 366

 Score =  371 bits (952), Expect = e-101,   Method: Composition-based stats.
 Identities = 199/345 (57%), Positives = 268/345 (77%), Gaps = 4/345 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N+ D+  AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+G
Sbjct: 18  NVNDRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRG 75

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+E+YGPESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQP
Sbjct: 76  RIIEVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQP 135

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+
Sbjct: 136 DTGEQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLS 195

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
             I++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR   +K    + G
Sbjct: 196 GVINKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMG 255

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+T++KVVKNK+A PF+  E DIMYGEGIS  GEL+D+  +  +++KSG+W+S+K +R+G
Sbjct: 256 NKTKIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIG 315

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           QGREN+K +L+E+ +I + I   +R+   +  D   +EP    ++
Sbjct: 316 QGRENAKQYLKEHTDIRDEISKRVREEYEI--DGTNKEPLDENEE 358


>gi|157374439|ref|YP_001473039.1| recombinase A [Shewanella sediminis HAW-EB3]
 gi|189039610|sp|A8FST8|RECA_SHESH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|157316813|gb|ABV35911.1| Calcium-transporting ATPase [Shewanella sediminis HAW-EB3]
          Length = 353

 Score =  371 bits (952), Expect = e-101,   Method: Composition-based stats.
 Identities = 218/354 (61%), Positives = 277/354 (78%), Gaps = 10/354 (2%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL A L QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRI
Sbjct: 5   ANKEKALNAVLGQIEKQFGKGSIMKLGENRSM--DVETISTGSLSLDIALGAGGLPMGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTL L  IA +Q+ G  CAF+DAEHALD IYA+KLGVD+ NLL SQPDT
Sbjct: 63  VEIYGPESSGKTTLTLEVIAAAQREGKVCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  +
Sbjct: 123 GEQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           + ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD+D + GN+
Sbjct: 183 LKQTNTMLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDRDEVIGNE 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A+PFKQ EF I+YG+GI+  GEL+DLGV   +V+K+GAW+S+KG ++GQG
Sbjct: 243 TRVKVVKNKIAAPFKQAEFQILYGQGINSTGELVDLGVAHKLVEKAGAWYSYKGDKIGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           R N+  +L EN  +A+ I+  LR        +LL  PA    D A  D+  ++E
Sbjct: 303 RANAGKYLIENPAVAQEIDVALR--------ALLLTPAAPVADSATGDENIDLE 348


>gi|242133666|gb|ACS87944.1| RecA [Burkholderia cepacia]
          Length = 332

 Score =  371 bits (952), Expect = e-101,   Method: Composition-based stats.
 Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V
Sbjct: 1   EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 59

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTG
Sbjct: 60  EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 119

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITD LVRSG+VD+IVIDSVAAL P+AEIEG++G+SLPG+QARLMSQALRKLT +I
Sbjct: 120 EQALEITDALVRSGSVDMIVIDSVAALVPKAEIEGEVGDSLPGLQARLMSQALRKLTGTI 179

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T
Sbjct: 180 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 239

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG+
Sbjct: 240 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 299

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 300 DNAREFLRENPEIAREIENRIRESLGVVA 328


>gi|227549080|ref|ZP_03979129.1| recombination protein RecA [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227078862|gb|EEI16825.1| recombination protein RecA [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 382

 Score =  371 bits (952), Expect = e-101,   Method: Composition-based stats.
 Identities = 217/358 (60%), Positives = 279/358 (77%), Gaps = 8/358 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL+ I++ +GKGA+M+LG +      I+V+SSG+  +D+ALGIGGFP+GR+V
Sbjct: 14  DRQNALDAALAMIEKDFGKGAVMRLGDENR--PPIQVISSGNTAIDVALGIGGFPRGRVV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA +Q+ GG  AF+DAEHALD  YARKLGVD  NLL+SQPDTG
Sbjct: 72  EIYGPESSGKTTVALHAIASAQRAGGIAAFIDAEHALDPDYARKLGVDTDNLLVSQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DIIVIDSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 132 EQALEIADMLVRSGAIDIIVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR D+RR+ ++KD     GN+T
Sbjct: 192 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDVRRIQTLKDGQDSIGNRT 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK++ PFK  EFDIMYGEGIS    +ID+GV   IV KSG+WF+++G +LGQG+
Sbjct: 252 RLKVVKNKVSPPFKIAEFDIMYGEGISRESSIIDMGVDNGIVKKSGSWFTYEGDQLGQGK 311

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA-----DSLLQEPAINTKDDADKDDTDNVE 363
           E +++FL++N+++A  IE  + Q  G+ A     D L  +P ++   + D DD D  E
Sbjct: 312 EKARLFLKDNVDLANEIEDKIFQKLGVGAYAGNGDELTDDP-VDMVPNIDFDDDDANE 368


>gi|170755068|ref|YP_001781947.1| recombinase A [Clostridium botulinum B1 str. Okra]
 gi|170761563|ref|YP_001787715.1| recombinase A [Clostridium botulinum A3 str. Loch Maree]
 gi|169120280|gb|ACA44116.1| recA protein [Clostridium botulinum B1 str. Okra]
 gi|169408552|gb|ACA56963.1| recA protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 355

 Score =  371 bits (952), Expect = e-101,   Method: Composition-based stats.
 Identities = 219/356 (61%), Positives = 277/356 (77%), Gaps = 2/356 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M         +K KA+EAA+ QI++ +GKG+IM+LG    +   +E +S+GSL LDIALG
Sbjct: 1   MSVLANKVNPEKLKAIEAAMGQIEKQFGKGSIMKLGEDSIL--NVESISTGSLDLDIALG 58

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG P+GRI+EI+GPESSGKTT+ALH +A++QK GG  AF+DAEHALD  YAR LGVD+ 
Sbjct: 59  IGGVPRGRIIEIFGPESSGKTTVALHILAEAQKIGGAAAFIDAEHALDPAYARNLGVDID 118

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL++SQPDTGEQALEIT+ LVRSGAVD+IV+DSVAAL PRAEIEG+MG+S  G+QARLMS
Sbjct: 119 NLIVSQPDTGEQALEITEALVRSGAVDVIVVDSVAALVPRAEIEGEMGDSHVGLQARLMS 178

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKL  SI++SKC+ +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+RR+ SIK
Sbjct: 179 QALRKLAGSINKSKCVAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRRIDSIK 238

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             D I GN+TRVK+ KNK+A PFK  EFDIMY EGIS  G ++D+GV+  +VDKSG+WFS
Sbjct: 239 QGDQILGNRTRVKINKNKVAPPFKMAEFDIMYNEGISKVGNILDVGVREELVDKSGSWFS 298

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           +K  RLGQGREN+K FL++N+ IA  IE+ +R+   L           N K+D  +
Sbjct: 299 YKDTRLGQGRENAKQFLKDNMNIALEIENTIRKKHDLPVVDAKNLNIENKKEDNKE 354


>gi|47571260|gb|AAT35787.1| RecA [Mycobacterium scrofulaceum]
          Length = 319

 Score =  371 bits (952), Expect = e-101,   Method: Composition-based stats.
 Identities = 202/320 (63%), Positives = 263/320 (82%), Gaps = 2/320 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 2   PDREKALELAMAQIEKSYGKGSVMRLGDE--MRQPISVIPTGSIALDVALGIGGLPRGRV 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 60  VEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DI+VIDSV AL PRAE+EG+MG+S  G+QARLMSQALRK+T +
Sbjct: 120 GEQALEIADMLIRSGALDILVIDSVTALVPRAELEGEMGDSHVGLQARLMSQALRKMTGA 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+
Sbjct: 180 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNR 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG GIS  G LID+GV+   + KSG+WF+++G++LGQG
Sbjct: 240 TRVKVVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVEQGFIRKSGSWFTYEGEQLGQG 299

Query: 310 RENSKIFLRENIEIAENIES 329
           +EN++ FL EN E+A  IE 
Sbjct: 300 KENARTFLMENDEVANEIEK 319


>gi|261368036|ref|ZP_05980919.1| protein RecA [Subdoligranulum variabile DSM 15176]
 gi|282570024|gb|EFB75559.1| protein RecA [Subdoligranulum variabile DSM 15176]
          Length = 392

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 205/365 (56%), Positives = 275/365 (75%), Gaps = 13/365 (3%)

Query: 1   MDYRKEM------NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLG 54
           M  +K+          DK  ALE AL+QI++ +GKGA+M+LG+  ++   ++ + +GSLG
Sbjct: 1   MAAKKDTTPKSSGPATDKKAALETALAQIEKQFGKGAVMKLGANVTM--QVDAIPTGSLG 58

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LD+ALGIGG P+GRI+EIYGPESSGKTTLAL  +A++QK GG  AF+D EHALD  YA  
Sbjct: 59  LDLALGIGGLPRGRIIEIYGPESSGKTTLALQVLAEAQKMGGEVAFIDVEHALDPAYASA 118

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           LGVD+ +LL+SQPDTGEQA+EI + LVRSGA+D +V+DSVAA+ PRAEIEG+MG+S  G+
Sbjct: 119 LGVDIDSLLVSQPDTGEQAMEICEALVRSGAIDAVVVDSVAAMVPRAEIEGEMGDSHVGL 178

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
           QARLMSQALRKLT  I ++  + +FINQ+R K+G+++G+PE TTGG ALK+YSSVR+D+R
Sbjct: 179 QARLMSQALRKLTGVIGKTNTVCIFINQLREKVGIVYGNPEVTTGGRALKYYSSVRIDVR 238

Query: 235 RVGSIKDKD-SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVD 293
           R+  +KD   +  GN+TR K+VKNK+A PF++ EFDIM+GEGIS  GE++DLGVK  IV 
Sbjct: 239 RIEGLKDSTGAFIGNRTRAKIVKNKVAPPFREAEFDIMFGEGISKIGEILDLGVKLGIVQ 298

Query: 294 KSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           KSGAWF++   RLGQGR+N+K FL+E+ E+++ IE ++R N    AD LL      T   
Sbjct: 299 KSGAWFNYGEMRLGQGRDNAKQFLKEHPEVSDEIEKIVRAN----ADRLLAAGKKGTVKP 354

Query: 354 ADKDD 358
            D  +
Sbjct: 355 LDPSE 359


>gi|30525000|emb|CAD70709.1| RecA protein [Burkholderia fungorum]
          Length = 345

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 227/331 (68%), Positives = 286/331 (86%), Gaps = 1/331 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG++M+LG  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 5   TAEKSKALAAALAQIEKQFGKGSVMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLPRGR 63

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPD
Sbjct: 64  VVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPD 123

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 124 TGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 183

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 184 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 243

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQ
Sbjct: 244 ETRVKVVKNKVAPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQ 303

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           G++N++ FLREN +IA  IE+ +R++ G+ A
Sbjct: 304 GKDNAREFLRENPDIAREIENRIRESLGVNA 334


>gi|47678134|emb|CAF21830.1| RecA recombinase [Enterococcus columbae]
          Length = 349

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 205/353 (58%), Positives = 272/353 (77%), Gaps = 7/353 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ +GKGAIM+LG +    + I  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKAALDAALKKIEKNFGKGAIMKLGEKAD--QQISTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPAYAKKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVD+IVIDSVAAL PRAEI+G+MG++  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDVIVIDSVAALVPRAEIDGEMGDTHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATIRLEVRRSEQLKSGTDIIGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYGEGIS  GEL+D+ V   I+DKSGAW+S+KG R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKTAEIDIMYGEGISQEGELLDMAVDVDIIDKSGAWYSYKGDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           EN K +++E+ E+   + +L+R   G+        P+   +   +  DT ++E
Sbjct: 302 ENVKNYMKEHPEMVAEVSALVRNAYGIG-----DVPSETIEATDEFQDTLDIE 349


>gi|37525216|ref|NP_928560.1| recombinase A [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|60393010|sp|Q7N7A6|RECA_PHOLL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|36784643|emb|CAE13543.1| RecA protein (Recombinase A) [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 355

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 211/323 (65%), Positives = 270/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GS+K+ + + G++T
Sbjct: 184 KSSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKNGEEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+ +GELIDLGVK  +V+K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQIMYGEGINTYGELIDLGVKHKLVEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+ I+L+E+ E+A  ++  LR+
Sbjct: 304 ANATIYLKEHPEVATELDKKLRE 326


>gi|146278408|ref|YP_001168567.1| recombinase A [Rhodobacter sphaeroides ATCC 17025]
 gi|166220671|sp|A4WV48|RECA_RHOS5 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|145556649|gb|ABP71262.1| recA protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 357

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 237/337 (70%), Positives = 287/337 (85%), Gaps = 4/337 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           ++ R+EM   DK+KALE+AL+QI+R +GKG+IM+LG+   + E IE  S+GSLGLDIALG
Sbjct: 9   LNGRREM---DKAKALESALAQIERQFGKGSIMKLGANSPVME-IEATSTGSLGLDIALG 64

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG PKGRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YA+KLGV+L 
Sbjct: 65  IGGLPKGRIIEIYGPESSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPAYAKKLGVNLD 124

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LLISQPDTGEQALEI D LVRSGAV +IV+DSVAALTP++EIEGDMG+   G QARLMS
Sbjct: 125 ELLISQPDTGEQALEIVDTLVRSGAVSLIVVDSVAALTPKSEIEGDMGDMQMGSQARLMS 184

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKLT+SI RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G IK
Sbjct: 185 QAMRKLTASIGRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGGIK 244

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D+D++ GN T+VKVVKNK+A PF++VEFDIMYGEGIS  GEL+DLGVKA +V+KSG+W+S
Sbjct: 245 DRDNVIGNTTKVKVVKNKVAPPFREVEFDIMYGEGISKTGELVDLGVKAGVVEKSGSWYS 304

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           +  +R+GQGREN+K FLR N  +A +IE  +R + GL
Sbjct: 305 YGDERIGQGRENAKAFLRANPSVAGDIEDKIRASHGL 341


>gi|254251505|ref|ZP_04944823.1| RecA/RadA recombinase [Burkholderia dolosa AUO158]
 gi|124894114|gb|EAY67994.1| RecA/RadA recombinase [Burkholderia dolosa AUO158]
          Length = 356

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 233/357 (65%), Positives = 295/357 (82%), Gaps = 3/357 (0%)

Query: 1   MDYRKEMN--IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIA 58
           M+  K+ +    +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIA
Sbjct: 1   MEESKKGSGMTAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIA 59

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV+
Sbjct: 60  LGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVN 119

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           + +LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARL
Sbjct: 120 VPDLLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARL 179

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GS
Sbjct: 180 MSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGS 239

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW
Sbjct: 240 IKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAW 299

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           +S+ G+++GQG++N++ FLREN EIA  IE+ +R++ G+ A            D+ +
Sbjct: 300 YSYNGEKIGQGKDNAREFLRENPEIAREIENRIRESLGVAAMPDGAGHEAEAMDEEE 356


>gi|148653778|ref|YP_001280871.1| recombinase A [Psychrobacter sp. PRwf-1]
 gi|172048565|sp|A5WGY0|RECA_PSYWF RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|148572862|gb|ABQ94921.1| recA protein [Psychrobacter sp. PRwf-1]
          Length = 349

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 228/353 (64%), Positives = 282/353 (79%), Gaps = 7/353 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K+KAL+AAL QI++ +GK  IM LG   +    ++VVS+GSLGLDIALGIGG PKGRI+
Sbjct: 4   NKAKALKAALGQIEKQFGKNTIMHLGDNSATL-DVDVVSTGSLGLDIALGIGGLPKGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGTCAF+DAEHALD IYARKLGV+  +LL+SQPD G
Sbjct: 63  EIYGPESSGKTTLTLQAIAECQKQGGTCAFIDAEHALDPIYARKLGVNTDDLLVSQPDNG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSGA+D+IVIDSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T + 
Sbjct: 123 EQALEITDMLVRSGALDMIVIDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNA 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K  D I GNQT
Sbjct: 183 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKSGDEIIGNQT 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV+KNKMA PF+Q EF+I YGEG +   E+IDLGV+  +V K+GAW+S+  +++GQG+
Sbjct: 243 RVKVIKNKMAPPFRQAEFEITYGEGTNHLAEVIDLGVEIGVVGKAGAWYSYGDEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            NS +FL++N  IAE IE+ +R      A+ L  EP    +   + +    VE
Sbjct: 303 ANSVLFLKDNPAIAEEIEAKIR------AEKLAVEPEKGAEAVDEVEPESEVE 349


>gi|52426298|ref|YP_089435.1| recombinase A [Mannheimia succiniciproducens MBEL55E]
 gi|59798184|sp|Q65QB0|RECA_MANSM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|52308350|gb|AAU38850.1| RecA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 351

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 225/350 (64%), Positives = 282/350 (80%), Gaps = 3/350 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL QI++ +GKGAIM+LG   ++   +E +S+GS+GLD+ALGIGG P GR
Sbjct: 4   NDEKSKALAAALGQIEKQFGKGAIMKLGDTQAL--DVESISTGSIGLDVALGIGGLPMGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEI+GPESSGKTTL L  IAQ+QK G  CAF+DAEHALD IYA KLGVD+K LL+SQPD
Sbjct: 62  VVEIFGPESSGKTTLTLSVIAQAQKAGKVCAFIDAEHALDPIYAAKLGVDVKELLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GEQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT 
Sbjct: 122 NGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            I  + C++VFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRRVG++KD D I GN
Sbjct: 182 QIKNANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRVGAVKDGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PF+QV+F I+YGEGIS  GELI+LGVK  +VDKSGAW+++ G ++GQ
Sbjct: 242 ETRVKVVKNKLAPPFRQVDFQILYGEGISKNGELIELGVKHKLVDKSGAWYAYNGDKIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLR-QNAGLVADSLLQEPAINTKDDADKD 357
           G+ N+  +L EN  +A  +E+ +R +       +LL +   N+++  D +
Sbjct: 302 GKANAMKWLAENPTVAAELENKIRAELLANPEQALLADIETNSEEKEDFE 351


>gi|302874936|ref|YP_003843569.1| recA protein [Clostridium cellulovorans 743B]
 gi|302577793|gb|ADL51805.1| recA protein [Clostridium cellulovorans 743B]
          Length = 357

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 209/355 (58%), Positives = 278/355 (78%), Gaps = 5/355 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K MN  DK KA++AA++QI++ +GKGAIM LG    +   ++ + +G L LD+ALGIGG 
Sbjct: 6   KYMN-DDKLKAIQAAMTQIEKQFGKGAIMTLGENSIL--DVDSIPTGCLALDVALGIGGV 62

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GRIVEIYGPESSGKTT+ALH +A++QK GG  AF+D EHALD  YAR++GV+ ++L++
Sbjct: 63  PRGRIVEIYGPESSGKTTVALHVVAEAQKQGGAAAFIDVEHALDPAYARRVGVNTEDLIV 122

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEIT+ LVRSGAVD++++DSVAAL P+AEIEG+MG++  G+QARLMSQALR
Sbjct: 123 SQPDTGEQALEITEALVRSGAVDVVIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALR 182

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KL  SI++SKC+++FINQ+R K+G+MFG+PETT GG ALKFY+SVRLDIR+  SIK  + 
Sbjct: 183 KLAGSINKSKCVVIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDIRKTDSIKQGED 242

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + GN+T++KV+KNK+A PFK  EFDIMY EGIS  G ++D+GVK  IV KSGAWFS+   
Sbjct: 243 VLGNRTKIKVIKNKVAPPFKLAEFDIMYNEGISKSGNILDVGVKEEIVQKSGAWFSYGDI 302

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAG--LVADSLLQEPAINTKDDADKD 357
           RLGQGREN+K F  EN E+A  +E+ +R+     L+  S + +      D+ D+D
Sbjct: 303 RLGQGRENAKQFFVENPELALEVENKIREKYNMPLIGLSDISKATEIVTDELDED 357


>gi|319786626|ref|YP_004146101.1| recA protein [Pseudoxanthomonas suwonensis 11-1]
 gi|317465138|gb|ADV26870.1| recA protein [Pseudoxanthomonas suwonensis 11-1]
          Length = 341

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 226/349 (64%), Positives = 283/349 (81%), Gaps = 13/349 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AALSQI++ +GKG++M++G    + E +EV+ +GSL LDIALGIGG PKGR+V
Sbjct: 4   NKKRALAAALSQIEKQFGKGSVMRMGD--RVVEPVEVIPTGSLMLDIALGIGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD IYA KLGV + +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAECQKQGGTAAFIDAEHALDPIYAAKLGVKVDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VDI+V+DSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSGSVDILVVDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  +++FINQ+R KIGVM    SPETTTGGNALKFY+SVRLDIRR+GSIK  D I GN
Sbjct: 182 KRSNTLVIFINQLRHKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGSIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQ+  +I+YGEGIS  GELID+GV A IV+KSGAW+S+  +R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQIVTEILYGEGISREGELIDMGVDAKIVEKSGAWYSYGSERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           G++NS+ +LREN E+A  +E  LR+           +PA  ++D+A +D
Sbjct: 302 GKDNSRQYLRENPEVAARLEGELREKF---------QPAEVSRDEAAED 341


>gi|170703541|ref|ZP_02894296.1| recA protein [Burkholderia ambifaria IOP40-10]
 gi|171319347|ref|ZP_02908458.1| recA protein [Burkholderia ambifaria MEX-5]
 gi|170131553|gb|EDT00126.1| recA protein [Burkholderia ambifaria IOP40-10]
 gi|171095454|gb|EDT40424.1| recA protein [Burkholderia ambifaria MEX-5]
          Length = 359

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 231/341 (67%), Positives = 292/341 (85%), Gaps = 3/341 (0%)

Query: 1   MDYRKEMN--IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIA 58
           M+  K+ +    +KSKAL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIA
Sbjct: 1   MEDSKKGSGMTAEKSKALAAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIA 59

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV+
Sbjct: 60  LGVGGLPRGRVVEIYGPESSGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVN 119

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARL
Sbjct: 120 VPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARL 179

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GS
Sbjct: 180 MSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGS 239

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW
Sbjct: 240 IKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAW 299

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +S+ G+++GQG++N++ FLREN EIA  IE+ +R++ G+V 
Sbjct: 300 YSYNGEKIGQGKDNAREFLRENPEIAREIENRIRESLGVVT 340


>gi|47571278|gb|AAT35796.1| RecA [Mycobacterium xenopi]
          Length = 324

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 199/322 (61%), Positives = 260/322 (80%), Gaps = 2/322 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI++ YGKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GRI
Sbjct: 5   PDREKALELAVAQIEKSYGKGSVMRLGDESR--QPISVIPTGSIALDVALGIGGLPRGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 63  VEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQA+RK+  +
Sbjct: 123 GEQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQAMRKMAGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLD+ R+ ++KD     GN+
Sbjct: 183 LNNSGTTAIFINQLREKVGVMFGSPETTTGGKALKFYASVRLDVSRIETLKDGTDAVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TR+KVVKNK A PF+Q E DI+YG+GIS  G LID+GV   ++ KSGAWF+++G++LGQG
Sbjct: 243 TRIKVVKNKCAPPFRQAELDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQG 302

Query: 310 RENSKIFLRENIEIAENIESLL 331
           +EN++ FL +N ++A  IE  +
Sbjct: 303 KENARNFLLQNTDVANEIEKKI 324


>gi|126667872|ref|ZP_01738838.1| recA protein [Marinobacter sp. ELB17]
 gi|126627688|gb|EAZ98319.1| recA protein [Marinobacter sp. ELB17]
          Length = 371

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 221/352 (62%), Positives = 279/352 (79%), Gaps = 4/352 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL AAL+QI+R +GKGAIM++G      E I  VS+GSLGLD+ALGIGG P GR+ 
Sbjct: 4   NRKKALSAALTQIERQFGKGAIMKMGDHPR--EAIPSVSTGSLGLDVALGIGGLPYGRVC 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD  YA KLGV++  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAEAQKQGKTCAFVDAEHALDPQYAEKLGVNVDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS AVD+I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKL  ++
Sbjct: 122 EQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLNGNV 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++KD D +TGN+T
Sbjct: 182 KNANVLLIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKDGDEVTGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI    E++D+GVK   VDK+GAW+++ G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYRMAEVVDMGVKEGFVDKAGAWYAYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
            N+  FL EN E+A+ IE+ +R    L+   + ++ A +   DA KD   NV
Sbjct: 302 ANACKFLEENPEMAKEIEAKVRDK--LMPKPVKKDAAKDAGKDAGKDAGKNV 351


>gi|58582564|ref|YP_201580.1| recombinase A [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58427158|gb|AAW76195.1| RecA [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 373

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 219/352 (62%), Positives = 283/352 (80%), Gaps = 13/352 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AALSQI++ +GKG++M++G    + E +EV+ +GSL LDIALG GG PKGR+V
Sbjct: 33  NKKRALAAALSQIEKQFGKGSVMRMGD--RVIEAVEVIPTGSLMLDIALGTGGLPKGRVV 90

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK GGT AF+DAEHALD +YA KLGV++ +LL+SQPDTG
Sbjct: 91  EIYGPESSGKTTLTLQAIAQCQKLGGTAAFIDAEHALDPVYAAKLGVNVDDLLLSQPDTG 150

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS +VDI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 151 EQALEIADMLVRSSSVDIVVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 210

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  ++VFINQ+RMKIGVM    SPE TTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 211 KRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 270

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELID+GV+A +V+K+GAW+S+  +R+GQ
Sbjct: 271 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVEKAGAWYSYGDERIGQ 330

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           G++N++ +LR+N ++A  +E+ LR+           +PA   ++  D ++ +
Sbjct: 331 GKDNARTYLRDNPQVAVRLEAELREKF---------QPAEAPREAGDDEEKE 373


>gi|300722253|ref|YP_003711537.1| DNA strand exchange and recombination protein [Xenorhabdus
           nematophila ATCC 19061]
 gi|298286856|sp|Q9X5P5|RECA_XENNA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|297628754|emb|CBJ89332.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Xenorhabdus nematophila ATCC 19061]
          Length = 358

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 215/356 (60%), Positives = 272/356 (76%), Gaps = 2/356 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P G
Sbjct: 3   NDENKQKALAAALGQIEKQFGKGSIMRLGENRSM--DVETISTGSLSLDIALGAGGLPMG 60

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQP
Sbjct: 61  RIVEIYGPESSGKTTLTLQVIAAAQREGRTCAFIDAEHALDPVYAKKLGVDIDNLLCSQP 120

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL 
Sbjct: 121 DTGEQALEICDALSRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 180

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++  S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GS+K+ D + G
Sbjct: 181 GNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSVKNGDEVVG 240

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           ++TRVKVVKNK+A+PFKQ EF I+YGEGI+  GELIDLGVK  +V+K+GAW+S+ G ++G
Sbjct: 241 SETRVKVVKNKVAAPFKQAEFQILYGEGINTLGELIDLGVKHKMVEKAGAWYSYNGDKIG 300

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           QG+ N+ I+L+E+ E A  +   LR              +    D  D  +  N E
Sbjct: 301 QGKANATIYLKEHPETAAELNKKLRDLLLHNTGDFSSAASDYVTDYEDNTEEVNNE 356


>gi|262393292|ref|YP_003285146.1| RecA protein [Vibrio sp. Ex25]
 gi|262336886|gb|ACY50681.1| RecA protein [Vibrio sp. Ex25]
          Length = 347

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 204/323 (63%), Positives = 270/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GEL+DLGVK  +V+K+GAW+S++G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKAGAWYSYQGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +LRE+ E+A+ I++ LR+
Sbjct: 302 ANACNYLREHPEVAKTIDTKLRE 324


>gi|210622626|ref|ZP_03293286.1| hypothetical protein CLOHIR_01234 [Clostridium hiranonis DSM 13275]
 gi|210154127|gb|EEA85133.1| hypothetical protein CLOHIR_01234 [Clostridium hiranonis DSM 13275]
          Length = 361

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 211/347 (60%), Positives = 275/347 (79%), Gaps = 2/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL  AL +I++ +GKG++M+LG   S+   I+ +S+GS+GLDIA+GIGG PKGRIV
Sbjct: 6   EKLKALNEALGKIEKDFGKGSVMRLGEATSL--EIDTISTGSIGLDIAIGIGGLPKGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A++QK GG  AF+DAEHALD +YA+ LGVD++NL+ISQPDTG
Sbjct: 64  EIYGPESSGKTTVALHCVAEAQKDGGIAAFIDAEHALDPVYAKALGVDVENLIISQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L+RSGA+DIIV+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT SI
Sbjct: 124 EQALEIAEALIRSGAIDIIVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGSI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+R K+G+MFG+PETTTGG ALKFYSSVRLD+R++ +IK  D + G++T
Sbjct: 184 KKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVLGSRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDIMYG+GIS  G+L+D+     +V KSG+W++++  +LGQGR
Sbjct: 244 RVKVVKNKVAPPFKQAEFDIMYGQGISKIGDLLDIAADIDVVKKSGSWYNYQDVKLGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           EN K FL +N+++   IE+ +R    L   S   +     K D  KD
Sbjct: 304 ENVKKFLEDNMDLTNEIEAKVRHYYHLDGTSPEDDVVEEVKADTKKD 350


>gi|225573513|ref|ZP_03782268.1| hypothetical protein RUMHYD_01706 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039128|gb|EEG49374.1| hypothetical protein RUMHYD_01706 [Blautia hydrogenotrophica DSM
           10507]
          Length = 352

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 204/352 (57%), Positives = 276/352 (78%), Gaps = 2/352 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN   K KALE+A+  I++ YGKGA+M+LG    I   IE V +GSL LDIALG+GG P+
Sbjct: 1   MNNEQKQKALESAIENIEKQYGKGAVMKLGE-SKINHQIETVPTGSLSLDIALGLGGVPR 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E+YGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YA+ +GVD+ NL ISQ
Sbjct: 60  GRILEVYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI + +VRSGAVDI+++DSVAAL P+AEI+GDMG+S  G+QARLMSQALRKL
Sbjct: 120 PDNGEQALEIAETMVRSGAVDIVIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+ IS+S CI++FINQ+R K+GVMFG+PETTTGG ALKFYSS+RL++R+  S+K      
Sbjct: 180 TAVISKSNCIVLFINQLREKVGVMFGNPETTTGGRALKFYSSIRLEVRKGESLKQGSEFV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G++T+VKVVKNK+A PFK  EFDIM+GEGIS  G+++DL    ++V+KSGAW+++ G+++
Sbjct: 240 GSRTKVKVVKNKVAPPFKTAEFDIMFGEGISREGDVLDLAAACNVVNKSGAWYAYNGEKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT-KDDADKD 357
           GQGREN+KI+L+E+ E+ + I+  +R    L+ +  +     ++   D+DK+
Sbjct: 300 GQGRENAKIYLKEHPEVFQEIDHKVRVFHHLLEEEPVGTEGTSSLVPDSDKE 351


>gi|213691840|ref|YP_002322426.1| recA protein [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213523301|gb|ACJ52048.1| recA protein [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320457935|dbj|BAJ68556.1| recombinase RecA [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 418

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 203/340 (59%), Positives = 265/340 (77%), Gaps = 2/340 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
              K      +  AL+ AL+Q+++ +GKG+ M+LG Q    + +EV+ +GSL LD+ALGI
Sbjct: 34  AEDKHELDPKRKAALDTALAQVEKSFGKGSAMRLGDQPE--QNVEVIPTGSLALDMALGI 91

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG PKGRIVEIYGPESSGKTTLALH +A +QK GG  A++DAEHALD  YARKLGVD  +
Sbjct: 92  GGLPKGRIVEIYGPESSGKTTLALHVVANAQKKGGVAAYIDAEHALDPAYARKLGVDTDS 151

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQ
Sbjct: 152 LIVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQ 211

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRK+T +++++    +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLDIRR+ ++K+
Sbjct: 212 ALRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDIRRIQTLKN 271

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            D   GN+TRVKVVKNKMA PFK  EFD++YGEGIS  G +ID+  +  +V KSG+WF++
Sbjct: 272 GDEAVGNRTRVKVVKNKMAPPFKSAEFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTY 331

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           +G +LGQGRE  + FL++N  I E IE+ ++   GL+  +
Sbjct: 332 EGDQLGQGREKVRQFLKDNPAITEEIENKVKAEFGLIGSA 371


>gi|46191337|ref|ZP_00206783.1| COG0468: RecA/RadA recombinase [Bifidobacterium longum DJO10A]
 gi|189439147|ref|YP_001954228.1| recombinase A [Bifidobacterium longum DJO10A]
 gi|227547654|ref|ZP_03977703.1| recombination protein A [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|317482460|ref|ZP_07941477.1| recA bacterial DNA recombination protein [Bifidobacterium sp.
           12_1_47BFAA]
 gi|322689410|ref|YP_004209144.1| recombinase RecA [Bifidobacterium longum subsp. infantis 157F]
 gi|322691377|ref|YP_004220947.1| recombinase RecA [Bifidobacterium longum subsp. longum JCM 1217]
 gi|189427582|gb|ACD97730.1| RecA/RadA recombinase [Bifidobacterium longum DJO10A]
 gi|227211909|gb|EEI79805.1| recombination protein A [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|316916120|gb|EFV37525.1| recA bacterial DNA recombination protein [Bifidobacterium sp.
           12_1_47BFAA]
 gi|320456233|dbj|BAJ66855.1| recombinase RecA [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320460746|dbj|BAJ71366.1| recombinase RecA [Bifidobacterium longum subsp. infantis 157F]
          Length = 418

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 203/340 (59%), Positives = 265/340 (77%), Gaps = 2/340 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
              K      +  AL+ AL+Q+++ +GKG+ M+LG Q    + +EV+ +GSL LD+ALGI
Sbjct: 34  AEDKHELDPKRKAALDTALAQVEKSFGKGSAMRLGDQPE--QNVEVIPTGSLALDMALGI 91

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG PKGRIVEIYGPESSGKTTLALH +A +QK GG  A++DAEHALD  YARKLGVD  +
Sbjct: 92  GGLPKGRIVEIYGPESSGKTTLALHVVANAQKKGGVAAYIDAEHALDPAYARKLGVDTDS 151

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQ
Sbjct: 152 LIVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQ 211

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRK+T +++++    +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLDIRR+ ++K+
Sbjct: 212 ALRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDIRRIQTLKN 271

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            D   GN+TRVKVVKNKMA PFK  EFD++YGEGIS  G +ID+  +  +V KSG+WF++
Sbjct: 272 GDEAVGNRTRVKVVKNKMAPPFKSAEFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTY 331

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           +G +LGQGRE  + FL++N  I E IE+ ++   GL+  +
Sbjct: 332 EGDQLGQGREKVRQFLKDNPAITEEIENKVKAEFGLIGSA 371


>gi|23465975|ref|NP_696578.1| recombinase A [Bifidobacterium longum NCC2705]
 gi|239621261|ref|ZP_04664292.1| protein recA [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|30316236|sp|Q8G4G9|RECA_BIFLO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|23326690|gb|AAN25214.1| RecA protein [Bifidobacterium longum NCC2705]
 gi|239515722|gb|EEQ55589.1| protein recA [Bifidobacterium longum subsp. infantis CCUG 52486]
          Length = 397

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 203/340 (59%), Positives = 265/340 (77%), Gaps = 2/340 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
              K      +  AL+ AL+Q+++ +GKG+ M+LG Q    + +EV+ +GSL LD+ALGI
Sbjct: 13  AEDKHELDPKRKAALDTALAQVEKSFGKGSAMRLGDQPE--QNVEVIPTGSLALDMALGI 70

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG PKGRIVEIYGPESSGKTTLALH +A +QK GG  A++DAEHALD  YARKLGVD  +
Sbjct: 71  GGLPKGRIVEIYGPESSGKTTLALHVVANAQKKGGVAAYIDAEHALDPAYARKLGVDTDS 130

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQ
Sbjct: 131 LIVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQ 190

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRK+T +++++    +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLDIRR+ ++K+
Sbjct: 191 ALRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDIRRIQTLKN 250

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            D   GN+TRVKVVKNKMA PFK  EFD++YGEGIS  G +ID+  +  +V KSG+WF++
Sbjct: 251 GDEAVGNRTRVKVVKNKMAPPFKSAEFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTY 310

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           +G +LGQGRE  + FL++N  I E IE+ ++   GL+  +
Sbjct: 311 EGDQLGQGREKVRQFLKDNPAITEEIENKVKAEFGLIGSA 350


>gi|295677592|ref|YP_003606116.1| recA protein [Burkholderia sp. CCGE1002]
 gi|295437435|gb|ADG16605.1| recA protein [Burkholderia sp. CCGE1002]
          Length = 358

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 229/348 (65%), Positives = 291/348 (83%), Gaps = 1/348 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG++M+LG  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 12  TAEKSKALAAALAQIEKQFGKGSVMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLPRGR 70

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPD
Sbjct: 71  VVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVADLLVSQPD 130

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 131 TGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 190

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 191 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 250

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQ
Sbjct: 251 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQ 310

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           G++N++ FLREN +IA  IE+ +R++ G+ A +     A     D ++
Sbjct: 311 GKDNAREFLRENPDIAREIENRIRESLGVTAMADAVTGADAEVADEEE 358


>gi|15924275|ref|NP_371809.1| recombinase A [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926868|ref|NP_374401.1| recombinase A [Staphylococcus aureus subsp. aureus N315]
 gi|21282897|ref|NP_645985.1| recombinase A [Staphylococcus aureus subsp. aureus MW2]
 gi|49483448|ref|YP_040672.1| recombinase A [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49486124|ref|YP_043345.1| recombinase A [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57651855|ref|YP_186161.1| recombinase A [Staphylococcus aureus subsp. aureus COL]
 gi|82750885|ref|YP_416626.1| recombinase A [Staphylococcus aureus RF122]
 gi|148267775|ref|YP_001246718.1| recombinase A [Staphylococcus aureus subsp. aureus JH9]
 gi|150393834|ref|YP_001316509.1| recombinase A [Staphylococcus aureus subsp. aureus JH1]
 gi|151221406|ref|YP_001332228.1| recombinase A [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156979606|ref|YP_001441865.1| recombinase A [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509451|ref|YP_001575110.1| recombinase A [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221142519|ref|ZP_03567012.1| recombinase A [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|228937974|ref|YP_499795.2| recombinase A [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|229558720|ref|YP_493875.2| recombinase A [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|253316422|ref|ZP_04839635.1| recombinase A [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253731904|ref|ZP_04866069.1| recombination protein RecA [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733477|ref|ZP_04867642.1| recombination protein RecA [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255006072|ref|ZP_05144673.2| recombinase A [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257425339|ref|ZP_05601764.1| RecA protein [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428000|ref|ZP_05604398.1| RecA protein [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430633|ref|ZP_05607015.1| recombination protein RecA [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433393|ref|ZP_05609751.1| recombinase A protein [Staphylococcus aureus subsp. aureus E1410]
 gi|257436235|ref|ZP_05612282.1| RecA protein [Staphylococcus aureus subsp. aureus M876]
 gi|257795659|ref|ZP_05644638.1| RecA protein [Staphylococcus aureus A9781]
 gi|258416062|ref|ZP_05682330.1| recombination protein RecA [Staphylococcus aureus A9763]
 gi|258421645|ref|ZP_05684569.1| RecA protein [Staphylococcus aureus A9719]
 gi|258423874|ref|ZP_05686759.1| RecA protein [Staphylococcus aureus A9635]
 gi|258434801|ref|ZP_05688875.1| recombinase A [Staphylococcus aureus A9299]
 gi|258444623|ref|ZP_05692952.1| recombination protein RecA [Staphylococcus aureus A8115]
 gi|258447544|ref|ZP_05695688.1| recombinase A [Staphylococcus aureus A6300]
 gi|258449386|ref|ZP_05697489.1| recombinase A [Staphylococcus aureus A6224]
 gi|258452584|ref|ZP_05700590.1| recombinase A [Staphylococcus aureus A5948]
 gi|258454765|ref|ZP_05702729.1| recombinase A protein [Staphylococcus aureus A5937]
 gi|262048173|ref|ZP_06021060.1| recombinase A [Staphylococcus aureus D30]
 gi|262051347|ref|ZP_06023570.1| recombinase A [Staphylococcus aureus 930918-3]
 gi|269202902|ref|YP_003282171.1| recombinase A [Staphylococcus aureus subsp. aureus ED98]
 gi|282892773|ref|ZP_06301008.1| RecA protein [Staphylococcus aureus A8117]
 gi|282903840|ref|ZP_06311728.1| RecA protein [Staphylococcus aureus subsp. aureus C160]
 gi|282905603|ref|ZP_06313458.1| RecA protein [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908579|ref|ZP_06316409.1| recombinase A protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910857|ref|ZP_06318660.1| recombinase A protein [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914062|ref|ZP_06321849.1| RecA protein [Staphylococcus aureus subsp. aureus M899]
 gi|282916545|ref|ZP_06324303.1| RecA protein [Staphylococcus aureus subsp. aureus D139]
 gi|282918984|ref|ZP_06326719.1| RecA protein [Staphylococcus aureus subsp. aureus C427]
 gi|282920529|ref|ZP_06328250.1| RecA protein [Staphylococcus aureus A9765]
 gi|282924107|ref|ZP_06331783.1| RecA protein [Staphylococcus aureus subsp. aureus C101]
 gi|282927627|ref|ZP_06335243.1| RecA protein [Staphylococcus aureus A10102]
 gi|283770349|ref|ZP_06343241.1| recombination protein RecA [Staphylococcus aureus subsp. aureus
           H19]
 gi|283958028|ref|ZP_06375479.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|284024278|ref|ZP_06378676.1| recombinase A [Staphylococcus aureus subsp. aureus 132]
 gi|293501094|ref|ZP_06666945.1| RecA protein [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510056|ref|ZP_06668764.1| RecA protein [Staphylococcus aureus subsp. aureus M809]
 gi|293526642|ref|ZP_06671327.1| RecA protein [Staphylococcus aureus subsp. aureus M1015]
 gi|294848281|ref|ZP_06789028.1| RecA protein [Staphylococcus aureus A9754]
 gi|295406222|ref|ZP_06816029.1| RecA protein [Staphylococcus aureus A8819]
 gi|295427772|ref|ZP_06820404.1| RecA protein [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296274843|ref|ZP_06857350.1| recombinase A [Staphylococcus aureus subsp. aureus MR1]
 gi|297208068|ref|ZP_06924499.1| recombination protein A [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297244450|ref|ZP_06928333.1| RecA protein [Staphylococcus aureus A8796]
 gi|297591270|ref|ZP_06949908.1| recombination protein A [Staphylococcus aureus subsp. aureus MN8]
 gi|300912150|ref|ZP_07129593.1| recombination protein A [Staphylococcus aureus subsp. aureus TCH70]
 gi|304381151|ref|ZP_07363804.1| recombination protein A [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|56749519|sp|Q6G9S8|RECA_STAAS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|56749566|sp|Q6GHF0|RECA_STAAR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|56753678|sp|P68844|RECA_STAAN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|56753679|sp|P68845|RECA_STAAU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|56753680|sp|P68846|RECA_STAAW RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|60392999|sp|P68843|RECA_STAAM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|71152037|sp|Q5HGE6|RECA_STAAC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123741033|sp|Q2YXN2|RECA_STAAB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166220684|sp|A7X1S3|RECA_STAA1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|172048869|sp|A6QGI4|RECA_STAAE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|189039611|sp|A6U1A4|RECA_STAA2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|189039612|sp|A5ISG9|RECA_STAA9 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|189039613|sp|A8Z1V6|RECA_STAAT RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|13183627|gb|AAK15276.1|AF317802_1 RecA [Staphylococcus aureus]
 gi|463285|gb|AAA50463.1| putative [Staphylococcus aureus]
 gi|13701085|dbj|BAB42380.1| RecA protein [Staphylococcus aureus subsp. aureus N315]
 gi|14247055|dbj|BAB57447.1| RecA protein [Staphylococcus aureus subsp. aureus Mu50]
 gi|21204336|dbj|BAB95033.1| RecA protein [Staphylococcus aureus subsp. aureus MW2]
 gi|49241577|emb|CAG40263.1| recombinase A [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49244567|emb|CAG42996.1| recombinase A [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57286041|gb|AAW38135.1| recA protein [Staphylococcus aureus subsp. aureus COL]
 gi|82656416|emb|CAI80836.1| recombinase A protein [Staphylococcus aureus RF122]
 gi|147740844|gb|ABQ49142.1| RecA protein [Staphylococcus aureus subsp. aureus JH9]
 gi|149946286|gb|ABR52222.1| recA protein [Staphylococcus aureus subsp. aureus JH1]
 gi|150374206|dbj|BAF67466.1| recombinase A [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156721741|dbj|BAF78158.1| RecA protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368260|gb|ABX29231.1| recombination protein RecA [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724314|gb|EES93043.1| recombination protein RecA [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728531|gb|EES97260.1| recombination protein RecA [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257271796|gb|EEV03934.1| RecA protein [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274841|gb|EEV06328.1| RecA protein [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278761|gb|EEV09380.1| recombination protein RecA [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281486|gb|EEV11623.1| recombinase A protein [Staphylococcus aureus subsp. aureus E1410]
 gi|257284517|gb|EEV14637.1| RecA protein [Staphylococcus aureus subsp. aureus M876]
 gi|257789631|gb|EEV27971.1| RecA protein [Staphylococcus aureus A9781]
 gi|257839210|gb|EEV63686.1| recombination protein RecA [Staphylococcus aureus A9763]
 gi|257842331|gb|EEV66756.1| RecA protein [Staphylococcus aureus A9719]
 gi|257845903|gb|EEV69932.1| RecA protein [Staphylococcus aureus A9635]
 gi|257849162|gb|EEV73144.1| recombinase A [Staphylococcus aureus A9299]
 gi|257850116|gb|EEV74069.1| recombination protein RecA [Staphylococcus aureus A8115]
 gi|257853735|gb|EEV76694.1| recombinase A [Staphylococcus aureus A6300]
 gi|257857374|gb|EEV80272.1| recombinase A [Staphylococcus aureus A6224]
 gi|257859802|gb|EEV82644.1| recombinase A [Staphylococcus aureus A5948]
 gi|257863148|gb|EEV85912.1| recombinase A protein [Staphylococcus aureus A5937]
 gi|259160722|gb|EEW45743.1| recombinase A [Staphylococcus aureus 930918-3]
 gi|259163739|gb|EEW48294.1| recombinase A [Staphylococcus aureus D30]
 gi|262075192|gb|ACY11165.1| recombinase A [Staphylococcus aureus subsp. aureus ED98]
 gi|269940776|emb|CBI49158.1| recombinase A [Staphylococcus aureus subsp. aureus TW20]
 gi|282314079|gb|EFB44471.1| RecA protein [Staphylococcus aureus subsp. aureus C101]
 gi|282316794|gb|EFB47168.1| RecA protein [Staphylococcus aureus subsp. aureus C427]
 gi|282319032|gb|EFB49384.1| RecA protein [Staphylococcus aureus subsp. aureus D139]
 gi|282322130|gb|EFB52454.1| RecA protein [Staphylococcus aureus subsp. aureus M899]
 gi|282325462|gb|EFB55771.1| recombinase A protein [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327641|gb|EFB57924.1| recombinase A protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282330895|gb|EFB60409.1| RecA protein [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282590630|gb|EFB95707.1| RecA protein [Staphylococcus aureus A10102]
 gi|282594191|gb|EFB99178.1| RecA protein [Staphylococcus aureus A9765]
 gi|282595458|gb|EFC00422.1| RecA protein [Staphylococcus aureus subsp. aureus C160]
 gi|282764770|gb|EFC04895.1| RecA protein [Staphylococcus aureus A8117]
 gi|283460496|gb|EFC07586.1| recombination protein RecA [Staphylococcus aureus subsp. aureus
           H19]
 gi|283470500|emb|CAQ49711.1| protein RecA [Staphylococcus aureus subsp. aureus ST398]
 gi|283790177|gb|EFC28994.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|285816967|gb|ADC37454.1| RecA protein [Staphylococcus aureus 04-02981]
 gi|290920714|gb|EFD97777.1| RecA protein [Staphylococcus aureus subsp. aureus M1015]
 gi|291096099|gb|EFE26360.1| RecA protein [Staphylococcus aureus subsp. aureus 58-424]
 gi|291467000|gb|EFF09518.1| RecA protein [Staphylococcus aureus subsp. aureus M809]
 gi|294825081|gb|EFG41503.1| RecA protein [Staphylococcus aureus A9754]
 gi|294968810|gb|EFG44832.1| RecA protein [Staphylococcus aureus A8819]
 gi|295128130|gb|EFG57764.1| RecA protein [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296887311|gb|EFH26213.1| recombination protein A [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297178480|gb|EFH37726.1| RecA protein [Staphylococcus aureus A8796]
 gi|297576156|gb|EFH94872.1| recombination protein A [Staphylococcus aureus subsp. aureus MN8]
 gi|298694577|gb|ADI97799.1| recombinase A protein [Staphylococcus aureus subsp. aureus ED133]
 gi|300886396|gb|EFK81598.1| recombination protein A [Staphylococcus aureus subsp. aureus TCH70]
 gi|302751107|gb|ADL65284.1| recombination protein RecA [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340134|gb|EFM06075.1| recombination protein A [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312438334|gb|ADQ77405.1| recombination protein A [Staphylococcus aureus subsp. aureus TCH60]
 gi|312829679|emb|CBX34521.1| protein RecA [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315131079|gb|EFT87063.1| recombinase A [Staphylococcus aureus subsp. aureus CGS03]
 gi|315194173|gb|EFU24566.1| recombinase A [Staphylococcus aureus subsp. aureus CGS00]
 gi|315198527|gb|EFU28856.1| recombinase A [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140898|gb|EFW32745.1| protein RecA [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144386|gb|EFW36152.1| protein RecA [Staphylococcus aureus subsp. aureus MRSA177]
 gi|323441067|gb|EGA98774.1| recombinase A [Staphylococcus aureus O11]
 gi|323443936|gb|EGB01547.1| recombinase A [Staphylococcus aureus O46]
 gi|329313955|gb|AEB88368.1| Protein recA [Staphylococcus aureus subsp. aureus T0131]
 gi|329727439|gb|EGG63895.1| RecA protein [Staphylococcus aureus subsp. aureus 21172]
 gi|329727797|gb|EGG64248.1| RecA protein [Staphylococcus aureus subsp. aureus 21189]
 gi|329733663|gb|EGG69991.1| RecA protein [Staphylococcus aureus subsp. aureus 21193]
          Length = 347

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 204/347 (58%), Positives = 267/347 (76%), Gaps = 3/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+  +  +++ +GKGA+M+LG    I   +   S+GS+ LD ALG+GG+PKGRI+
Sbjct: 4   DRQKALDTVIKNMEKSFGKGAVMKLGDN--IGRRVSTTSTGSVTLDNALGVGGYPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ Q  GG  AF+DAEHALD  YA+ LGVD+ NL +SQPD G
Sbjct: 62  EIYGPESSGKTTVALHAIAEVQSNGGVAAFIDAEHALDPEYAQALGVDIDNLYLSQPDHG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI +  VRSGAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 122 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S    +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T
Sbjct: 182 SKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G+R+GQG+
Sbjct: 242 KIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           EN K++L+EN +I E I+  LR+  G+ +D  ++E     K   D++
Sbjct: 302 ENVKMYLKENPQIKEEIDRKLREKLGI-SDGDVEETEDAPKSLFDEE 347


>gi|167579956|ref|ZP_02372830.1| recombinase A [Burkholderia thailandensis TXDOH]
          Length = 356

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 232/357 (64%), Positives = 293/357 (82%), Gaps = 3/357 (0%)

Query: 1   MDYRKEMN--IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIA 58
           M+  K+ +    +KSKAL AAL+QI++ +GKG+IM+LG  G   E I+VVS+GSLGLDIA
Sbjct: 1   MEESKKGSGLTAEKSKALAAALAQIEKQFGKGSIMRLGD-GEAVEDIQVVSTGSLGLDIA 59

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV+
Sbjct: 60  LGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDVQYASKLGVN 119

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +  LLISQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG++LPG+QARL
Sbjct: 120 VPELLISQPDTGEQALEIVDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDALPGLQARL 179

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRKLT SI R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GS
Sbjct: 180 MSQALRKLTGSIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGS 239

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW
Sbjct: 240 IKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAW 299

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           +S+ G+++GQG++N++ FLREN EIA  IE+ +R++ G+ A            D+ +
Sbjct: 300 YSYNGEKIGQGKDNAREFLRENPEIAREIENRIRESLGVAAMPQDAGSEAEIMDEEE 356


>gi|227833324|ref|YP_002835031.1| recombinase A [Corynebacterium aurimucosum ATCC 700975]
 gi|262184308|ref|ZP_06043729.1| recombinase A [Corynebacterium aurimucosum ATCC 700975]
 gi|254790429|sp|C3PGY9|RECA_CORA7 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|227454340|gb|ACP33093.1| recombinase A [Corynebacterium aurimucosum ATCC 700975]
          Length = 377

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 216/378 (57%), Positives = 278/378 (73%), Gaps = 22/378 (5%)

Query: 1   MDYRKEMNIV----DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLD 56
           M  +K+ +      D+ KAL+AA++ I++ +GKGA+M+LG        I+ +SSG+  +D
Sbjct: 1   MATKKKSSAANKGDDRQKALDAAMAMIEKDFGKGAVMRLGDDDR--PPIQAISSGNTAID 58

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
           IALG+GGFP+GRIVEIYGPESSGKTT+ALH IA +QKTGG  AF+DAEHALD  YAR LG
Sbjct: 59  IALGVGGFPRGRIVEIYGPESSGKTTVALHAIASAQKTGGIAAFIDAEHALDPEYARLLG 118

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           VD  NLL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAALTP+AEIEG+MG+S  G+QA
Sbjct: 119 VDTDNLLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALTPKAEIEGEMGDSHVGLQA 178

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           RLMSQALRK+T ++  S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR DIRR+
Sbjct: 179 RLMSQALRKMTGALYNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRI 238

Query: 237 GSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
            ++KD     GN+T++KVVKNK++ PFK  EFDIMYGEGIS    +IDLGV+   + KSG
Sbjct: 239 QTLKDGQDAIGNRTKLKVVKNKVSPPFKIAEFDIMYGEGISRESSIIDLGVEHGFIKKSG 298

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAG----------------LVAD 340
           +WF+++G +LGQG+E ++ FL++N ++A+ IE  +    G                  AD
Sbjct: 299 SWFTYEGDQLGQGKEKARNFLKDNPDLADEIEKKIFVKLGVGAAAAEAGEDVAMDVPGAD 358

Query: 341 SLLQEPAINTKDDADKDD 358
             L + A++   + D DD
Sbjct: 359 DPLTDEAVDLVPNVDFDD 376


>gi|157326983|gb|ABV44604.1| RecA [Burkholderia multivorans]
          Length = 319

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 222/318 (69%), Positives = 277/318 (87%), Gaps = 1/318 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LV
Sbjct: 60  TLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FIN
Sbjct: 120 RSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ 
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN 
Sbjct: 240 PFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENP 299

Query: 322 EIAENIESLLRQNAGLVA 339
           EIA  IE+ +R++ G+ A
Sbjct: 300 EIAREIENRIRESLGVAA 317


>gi|261364593|ref|ZP_05977476.1| protein RecA [Neisseria mucosa ATCC 25996]
 gi|288567177|gb|EFC88737.1| protein RecA [Neisseria mucosa ATCC 25996]
          Length = 348

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 218/351 (62%), Positives = 281/351 (80%), Gaps = 6/351 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++       E ++V+S+GSLG+D+ALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKNFGKGSIMKM-DGSQQEENLDVISTGSLGVDLALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IAQ QKTGG CAF+DAEHA D +YARKLGV ++ L +SQPDTG
Sbjct: 63  EIFGPESSGKTTLCLEAIAQCQKTGGICAFIDAEHAFDPVYARKLGVKVEELYLSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG VD++V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  I
Sbjct: 123 EQALEICDTLVRSGGVDMVVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGHI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+  ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G IK  D + GN+T
Sbjct: 183 KRTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGQIKKGDDVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV+KNK+A PF+Q EFDI+YGEG+S+ GELIDLGVK +IV+KSGAW+S+ G ++GQG+
Sbjct: 243 KVKVIKNKVAPPFRQAEFDILYGEGVSWEGELIDLGVKYNIVEKSGAWYSYNGAKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           +N +++L+EN E+A  I++ +R   G+  D           DD D +  + 
Sbjct: 303 DNVRVWLKENPEVANEIDAKIRAAVGINVDI-----TEGKLDDTDGERPEE 348


>gi|116119156|gb|ABJ74748.1| RecA [Burkholderia sp. M292]
          Length = 347

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 231/350 (66%), Positives = 294/350 (84%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 2   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 121 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ P ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 241 ETRVKVVKNKVSPPSREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ G+V+   + +   N  +  D+++
Sbjct: 301 GKDNAREFLRENPEIAREIENRIRESLGVVS---MPDGVANEAEAMDEEE 347


>gi|119774183|ref|YP_926923.1| recombinase A [Shewanella amazonensis SB2B]
 gi|166220676|sp|A1S4E7|RECA_SHEAM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|119766683|gb|ABL99253.1| recA protein [Shewanella amazonensis SB2B]
          Length = 355

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 211/351 (60%), Positives = 272/351 (77%), Gaps = 2/351 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL A L QI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P GRI
Sbjct: 5   PNKEKALAAVLGQIEKQFGKGSIMKLGEDRSM--DVETISTGSLSLDVALGAGGLPMGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTL L  IA +Q+ G  CAF+DAEHALD +YARKLGVD+ NLL SQPDT
Sbjct: 63  VEIYGPESSGKTTLTLEVIAAAQREGKVCAFIDAEHALDPVYARKLGVDIDNLLCSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D L RSGAVD+I++DSVAAL P+AEIEG++G+S  G+ AR+MSQA+RKL  +
Sbjct: 123 GEQALEICDALTRSGAVDVIIVDSVAALVPKAEIEGEIGDSHVGLAARMMSQAMRKLAGN 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           + +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+
Sbjct: 183 LKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A+PF+Q +F I+YG+GI+  GEL+DLGV   +++KSGAW+S+KG ++GQG
Sbjct: 243 TRVKVVKNKIAAPFRQADFQILYGQGINRTGELVDLGVLHKLIEKSGAWYSYKGDKIGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           R N+  FL EN EIA  IE  LR+     + S      +   ++ D +  +
Sbjct: 303 RANATKFLAENTEIAAEIEKTLREMLLSHSSSSGSADEVEGDENIDFETGE 353


>gi|323339760|ref|ZP_08080030.1| recombination protein A [Lactobacillus ruminis ATCC 25644]
 gi|323092839|gb|EFZ35441.1| recombination protein A [Lactobacillus ruminis ATCC 25644]
          Length = 362

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 199/343 (58%), Positives = 263/343 (76%), Gaps = 2/343 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL +I++ +GKG+IM++G +      I  V +GSL LD ALG+GGFP+GRIV
Sbjct: 4   DRKAALDNALKKIEKNFGKGSIMRMGDKADTR--ISTVPTGSLSLDEALGVGGFPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  YA+ LGV++  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPAYAQALGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGA+DI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 122 EQGLEICDALVSSGAIDIVVVDSVAALVPRAEIEGEMGDTHVGLQARLMSQALRKLSGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   IKD   I GN+ 
Sbjct: 182 NKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQIKDGSDIIGNRV 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PFK  E DIMYGEGIS  GELID+ V+  IV KSG+WFS+  +R+GQGR
Sbjct: 242 RIKVVKNKVAPPFKTAEVDIMYGEGISKTGELIDMAVEKEIVKKSGSWFSYGEERIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           EN+K +++E+ +I E +   +R   G+      ++  +   D+
Sbjct: 302 ENAKKYMKEHPDIMEEVTKKVRAAYGIDDKQDDEQLELKIDDE 344


>gi|47678132|emb|CAF21829.1| RecA recombinase [Enterococcus cecorum]
          Length = 348

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 200/347 (57%), Positives = 268/347 (77%), Gaps = 2/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ +GKG+IM+LG +    + I  V SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKTALDAALKKIEKNFGKGSIMKLGEKAD--QQISTVPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKQGGTAAFIDAEHALDPAYAKKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDIIVIDSVAAL PRAEI+G+MG++  G+QARLMSQALRKL+ +I
Sbjct: 122 EQGLEIADALVSSGAVDIIVIDSVAALVPRAEIDGEMGDTHVGLQARLMSQALRKLSGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY++VRL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRSEQLKQGSDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYGEGIS  GEL+D+ V   +VDKSGAW+S+ G+R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEIDIMYGEGISQEGELLDMAVDVDLVDKSGAWYSYNGERIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           EN K +++++ E+   +   +R   G+   + ++      ++  D +
Sbjct: 302 ENVKNYMKDHPEMVSELLVKVRDAYGIGDGTTIEATEETEQETLDLE 348


>gi|83721519|ref|YP_441199.1| recombinase A [Burkholderia thailandensis E264]
 gi|167621349|ref|ZP_02389980.1| recombinase A [Burkholderia thailandensis Bt4]
 gi|257140135|ref|ZP_05588397.1| recombinase A [Burkholderia thailandensis E264]
 gi|83655344|gb|ABC39407.1| recA protein [Burkholderia thailandensis E264]
          Length = 356

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 232/360 (64%), Positives = 300/360 (83%), Gaps = 6/360 (1%)

Query: 1   MDYRKEMN--IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIA 58
           M+  K+ +    +KSKAL AAL+QI++ +GKG+IM+LG  G   E I+VVS+GSLGLDIA
Sbjct: 1   MEESKKGSGLTAEKSKALAAALAQIEKQFGKGSIMRLGD-GEAVEDIQVVSTGSLGLDIA 59

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV+
Sbjct: 60  LGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDVQYASKLGVN 119

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +  LLISQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG++LPG+QARL
Sbjct: 120 VPELLISQPDTGEQALEIVDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDALPGLQARL 179

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRKLT SI R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GS
Sbjct: 180 MSQALRKLTGSIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGS 239

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW
Sbjct: 240 IKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAW 299

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           +S+ G+++GQG++N++ FLREN EIA  IE+ +R++ G+   +++ + A +  +  D+++
Sbjct: 300 YSYNGEKIGQGKDNAREFLRENPEIAREIENRIRESLGV---AVMPQDAGSEAEIMDEEE 356


>gi|291516744|emb|CBK70360.1| RecA protein [Bifidobacterium longum subsp. longum F8]
          Length = 418

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 203/340 (59%), Positives = 265/340 (77%), Gaps = 2/340 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
              K      +  AL+ AL+Q+++ +GKG+ M+LG Q    + +EV+ +GSL LD+ALGI
Sbjct: 34  AEDKHELDPKRKAALDTALAQVEKSFGKGSAMRLGDQPE--QNVEVIPTGSLALDMALGI 91

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG PKGRIVEIYGPESSGKTTLALH +A +QK GG  A++DAEHALD  YARKLGVD  +
Sbjct: 92  GGLPKGRIVEIYGPESSGKTTLALHVVANAQKKGGVAAYIDAEHALDPAYARKLGVDTDS 151

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQ
Sbjct: 152 LIVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQ 211

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRK+T +++++    +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLDIRR+ ++K+
Sbjct: 212 ALRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDIRRIQTLKN 271

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            D   GN+TRVKVVKNKMA PFK  EFD++YGEGIS  G +ID+  +  +V KSG+WF++
Sbjct: 272 GDEAVGNRTRVKVVKNKMAPPFKSAEFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTY 331

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           +G +LGQGRE  + FL++N  I E IE+ ++   GL+  +
Sbjct: 332 EGDQLGQGREKVRQFLKDNPAITEEIENKVKAEFGLIGSA 371


>gi|302332891|gb|ADL23084.1| recombination protein RecA [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 347

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 203/347 (58%), Positives = 266/347 (76%), Gaps = 3/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+  +  +++ +GKGA+M+LG    I   +   S+GS+ LD ALG+GG+PKGRI+
Sbjct: 4   DRQKALDTVIKNMEKSFGKGAVMKLGDN--IGRRVSTTSTGSVTLDNALGVGGYPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ Q  GG  AF+DAEHALD  YA+ LGVD+ NL +SQPD G
Sbjct: 62  EIYGPESSGKTTVALHAIAEVQSNGGVAAFIDAEHALDPEYAQALGVDIDNLYLSQPDHG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI +  VRSGAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 122 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S    +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T
Sbjct: 182 SKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G+R+GQG+
Sbjct: 242 KIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           EN K++L+EN +  E I+  LR+  G+ +D  ++E     K   D++
Sbjct: 302 ENVKMYLKENPQFKEEIDRKLREKLGI-SDGDVEETEDAPKSLFDEE 347


>gi|285809808|gb|ADC36197.1| RecA [Burkholderia sp. GB-01]
          Length = 320

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 222/318 (69%), Positives = 276/318 (86%), Gaps = 1/318 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRMGD-GEATEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LV
Sbjct: 60  TLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FIN
Sbjct: 120 RSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ 
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN 
Sbjct: 240 PFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENP 299

Query: 322 EIAENIESLLRQNAGLVA 339
           EIA  IE+ +R++ G+ A
Sbjct: 300 EIAREIENRIRESLGVAA 317


>gi|253990686|ref|YP_003042042.1| recombinase A [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253782136|emb|CAQ85300.1| Protein recA (Recombinase A) [Photorhabdus asymbiotica]
          Length = 357

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 213/353 (60%), Positives = 279/353 (79%), Gaps = 2/353 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GS+K+ + + G++T
Sbjct: 184 KSSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKNGEEVIGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+ +GELIDLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQIMYGEGINTYGELIDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N+  +L+E++EIA  ++  LR+     A       +     D+  ++ +N E
Sbjct: 304 ANATTYLKEHLEIATELDKKLREMLLHNAGEFSSAASDYEDGDSGSEEINNEE 356


>gi|70728613|ref|YP_258362.1| recombinase A [Pseudomonas fluorescens Pf-5]
 gi|76363337|sp|Q4KHC1|RECA_PSEF5 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|68342912|gb|AAY90518.1| recA protein [Pseudomonas fluorescens Pf-5]
          Length = 350

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 218/348 (62%), Positives = 275/348 (79%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAQAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PF+Q EF I+YG+GI   GE+IDLGV    ++KSGAW+S++G ++GQG+
Sbjct: 242 RVKIVKNKVAPPFRQAEFQILYGKGIYLNGEIIDLGVLHGFLEKSGAWYSYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            NS  FL++N EI   +E  +R+     +  +   P   T+DD    D
Sbjct: 302 ANSAKFLQDNPEIGNALEKQIREKLLTASPDVKANPVKETEDDMADAD 349


>gi|163802980|ref|ZP_02196867.1| recombinase A [Vibrio sp. AND4]
 gi|159173270|gb|EDP58098.1| recombinase A [Vibrio sp. AND4]
          Length = 347

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 205/336 (61%), Positives = 272/336 (80%), Gaps = 4/336 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKKKALAAALGQIEKQFGKGSIMCLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++V+DSV ALTP+AEIE +MG+S  G+QAR++ QA+RKLT +I
Sbjct: 122 EQALEICDALARSGAIDVMVVDSVTALTPKAEIESEMGDSHMGLQARMLFQAMRKLTCNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    I+YG+G +  GEL+DLGVK  +V+K+GAW+S++G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEAHTQILYGQGFNREGELVDLGVKHKLVEKAGAWYSYQGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
            N+  +LRE+ E A+ I++ LR+   L++ +L + P
Sbjct: 302 ANACNYLREHPEAAKTIDAKLREM--LLSPALPEAP 335


>gi|90019285|gb|ABD84293.1| RecA/RadA recombinase-like [Yersinia sp. MH-1]
          Length = 355

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 213/351 (60%), Positives = 276/351 (78%), Gaps = 2/351 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKGAIM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGAIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDVVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
            N+  +L+EN  IA  I+  LR+     A       A    D+A+ + ++ 
Sbjct: 304 ANASNYLKENPAIATEIDKKLREMLLSGAGEQSTAAAGGFADEANDETSEE 354


>gi|16800503|ref|NP_470771.1| recombinase A [Listeria innocua Clip11262]
 gi|20139535|sp|Q92BV7|RECA_LISIN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|16413908|emb|CAC96666.1| Recombination protein recA [Listeria innocua Clip11262]
 gi|30265997|gb|AAN15814.1| RecA [Listeria innocua]
 gi|30265999|gb|AAN15815.1| RecA [Listeria innocua]
 gi|313623831|gb|EFR93956.1| protein RecA [Listeria innocua FSL J1-023]
          Length = 348

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 198/344 (57%), Positives = 267/344 (77%), Gaps = 4/344 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GR
Sbjct: 1   MNDRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPD
Sbjct: 59  IIEVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            I++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR   +K    + GN
Sbjct: 179 VINKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK+A PF+  E DIMYGEGIS  GEL+D+  +  +++KSG+W+S+K +R+GQ
Sbjct: 239 KTKIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GREN+K +L+E+ +I + I   +R+   +  D   +EP    ++
Sbjct: 299 GRENAKQYLKEHTDIRDEISKRVREEYEI--DGTNKEPLDENEE 340


>gi|296454323|ref|YP_003661466.1| recA protein [Bifidobacterium longum subsp. longum JDM301]
 gi|296183754|gb|ADH00636.1| recA protein [Bifidobacterium longum subsp. longum JDM301]
          Length = 397

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 203/340 (59%), Positives = 265/340 (77%), Gaps = 2/340 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
              K      +  AL+ AL+Q+++ +GKG+ M+LG Q    + +EV+ +GSL LD+ALGI
Sbjct: 13  AEDKHELDPKRKAALDTALAQVEKSFGKGSAMRLGDQPE--QNVEVIPTGSLALDMALGI 70

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG PKGRIVEIYGPESSGKTTLALH +A +QK GG  A++DAEHALD  YARKLGVD  +
Sbjct: 71  GGLPKGRIVEIYGPESSGKTTLALHVVANAQKKGGVAAYIDAEHALDPAYARKLGVDTDS 130

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQ
Sbjct: 131 LIVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQ 190

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRK+T +++++    +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLDIRR+ ++K+
Sbjct: 191 ALRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDIRRIQTLKN 250

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            D   GN+TRVKVVKNKMA PFK  EFD++YGEGIS  G +ID+  +  +V KSG+WF++
Sbjct: 251 GDEAVGNRTRVKVVKNKMAPPFKSAEFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTY 310

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           +G +LGQGRE  + FL++N  I E IE+ ++   GL+  +
Sbjct: 311 EGDQLGQGREKVRQFLKDNPAITEEIENKVKAEFGLIGSA 350


>gi|304440346|ref|ZP_07400235.1| recombination protein A [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371098|gb|EFM24715.1| recombination protein A [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 355

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 206/347 (59%), Positives = 270/347 (77%), Gaps = 2/347 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
            +   +K KALE A+++I++ +GKGA+M LG    +   IE + +GSL LD+ALGIGG P
Sbjct: 4   NLENKEKQKALETAVTKIEKQFGKGAVMLLGENSKL--DIESIPTGSLSLDVALGIGGIP 61

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRI+EIYGPESSGKTTLALH +A++QK GG  AF+DAEHALD  YAR LGVD KNL+IS
Sbjct: 62  KGRIIEIYGPESSGKTTLALHIVAEAQKMGGIAAFIDAEHALDPQYARALGVDEKNLIIS 121

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD+GEQALEI + L+RS AV +I+IDSVAALTP+AEI+G+MG+++ G  ARLMSQALRK
Sbjct: 122 QPDSGEQALEIAEHLIRSNAVSVIIIDSVAALTPKAEIDGEMGDAMVGRHARLMSQALRK 181

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
            T +I +S+  ++FINQ+R KIGV+FG+PETTTGG AL+FYSSVRLDIR++ ++K  D +
Sbjct: 182 FTGAIHKSQTSVIFINQLREKIGVVFGNPETTTGGRALRFYSSVRLDIRKIETLKQGDDM 241

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+ RVKV KNK+A PFKQVEFDIMYG+GIS  G LID+GV    VDKSG+W+S+  ++
Sbjct: 242 IGNRVRVKVAKNKVAPPFKQVEFDIMYGKGISRSGILIDMGVDYGFVDKSGSWYSYGEEK 301

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           LGQGREN+K FL +N  IA+ IE+ +R+      ++ +    +  +D
Sbjct: 302 LGQGRENAKAFLEQNKNIADEIEAKIRETLKPKEEAEVDAKEVKEED 348


>gi|242133684|gb|ACS87953.1| RecA [Burkholderia cepacia]
          Length = 336

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 229/331 (69%), Positives = 286/331 (86%), Gaps = 1/331 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ + KG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFDKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 120 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 180 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 240 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           G++N++ FLREN EIA  IE+ +R++ G+V+
Sbjct: 300 GKDNAREFLRENPEIAREIENRIRESLGVVS 330


>gi|225936948|emb|CAJ82771.1| recA recombinase [Enterococcus dispar]
          Length = 345

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 201/340 (59%), Positives = 268/340 (78%), Gaps = 2/340 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ YGKGA+M+LG +    + I  + SGSL LD+ALG+GG+P+GRIV
Sbjct: 4   DRKSALDAALKKIEKNYGKGAVMKLGEKAD--QQISTIPSGSLALDVALGVGGYPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD +YA+ LGV++  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPLYAQNLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGA+DI+VIDSVAAL PRAEI+G+MG++  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAIDIVVIDSVAALVPRAEIDGEMGDAHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I VFINQ+R K+G+MFG+PETT GG ALKFY+++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAVFINQIREKVGIMFGNPETTPGGRALKFYATIRLEVRRAEQLKSGTDIIGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E D+MYG+GIS  GEL+D+  +  IVDKSGAW+S+KG R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEVDLMYGQGISQEGELLDMASEQDIVDKSGAWYSYKGDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           +N+K +++E+ E+   I + +R+  G+   S + E A   
Sbjct: 302 DNAKNYMKEHPEMKAEISTRVREAYGIGDGSEVPEKAQEE 341


>gi|94263079|ref|ZP_01286898.1| RecA bacterial DNA recombination protein [delta proteobacterium
           MLMS-1]
 gi|94266364|ref|ZP_01290064.1| RecA bacterial DNA recombination protein [delta proteobacterium
           MLMS-1]
 gi|93453047|gb|EAT03532.1| RecA bacterial DNA recombination protein [delta proteobacterium
           MLMS-1]
 gi|93456622|gb|EAT06730.1| RecA bacterial DNA recombination protein [delta proteobacterium
           MLMS-1]
          Length = 360

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 204/338 (60%), Positives = 266/338 (78%), Gaps = 2/338 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            DK K L++A++QIQ+ +GKGAIM+LG+   +   +  +S+G L LDIA GIGG P GRI
Sbjct: 6   ADKGKTLDSAINQIQKQFGKGAIMRLGADERV--AVPAISTGILSLDIACGIGGIPCGRI 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
            EIYGPESSGKTTLAL  IA SQ+ GG+ AF+DAEHALD  YA +LGV+   LL+SQPD 
Sbjct: 64  TEIYGPESSGKTTLALQIIASSQQRGGSVAFIDAEHALDVTYAERLGVNADELLVSQPDY 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI ++L+RS AVD+IV+DSVAALTP+AEI+G++G+S  G+QARLMSQA+RKL S 
Sbjct: 124 GEQALEIAEVLIRSAAVDVIVVDSVAALTPKAEIDGNIGDSHVGLQARLMSQAMRKLASL 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           + R+   ++FINQ+RMKIGVMFG+PETTTGGNALKFYSS+R+DIRR+ +IKD D + GN+
Sbjct: 184 LQRTNTAIIFINQLRMKIGVMFGNPETTTGGNALKFYSSMRIDIRRISTIKDGDEMIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + K+VKNK+A PFK  EFDI++GEG S  G+L+DL V  +IVDKSGAW+S+ G+R+GQG
Sbjct: 244 VKAKLVKNKVAPPFKIAEFDIIFGEGSSREGDLLDLAVGQNIVDKSGAWYSYNGERIGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           RENSK +L+E+ E+A+ IE+ +R   GL       +  
Sbjct: 304 RENSKTYLKEHPEMADEIETKVRLGFGLAMPGQEADKE 341


>gi|229588727|ref|YP_002870846.1| recombinase A [Pseudomonas fluorescens SBW25]
 gi|259563341|sp|C3KDG0|RECA_PSEFS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|229360593|emb|CAY47450.1| recombinase A [Pseudomonas fluorescens SBW25]
          Length = 352

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 218/350 (62%), Positives = 273/350 (78%), Gaps = 2/350 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE+IDLGV    V+KSGAW+++ G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
            NS  FL +N +IA  +E  +R      A  +          + ++ DTD
Sbjct: 302 ANSAKFLADNPDIAATLEKQIRDKLLTAAPDVKAAANREPVAEVEEADTD 351


>gi|168180717|ref|ZP_02615381.1| recA protein [Clostridium botulinum NCTC 2916]
 gi|226949757|ref|YP_002804848.1| recombinase A [Clostridium botulinum A2 str. Kyoto]
 gi|182668391|gb|EDT80370.1| recA protein [Clostridium botulinum NCTC 2916]
 gi|226841660|gb|ACO84326.1| recA protein [Clostridium botulinum A2 str. Kyoto]
          Length = 355

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 219/356 (61%), Positives = 277/356 (77%), Gaps = 2/356 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M         +K KA+EAA+ QI++ +GKG+IM+LG    +   +E +S+GSL LDIALG
Sbjct: 1   MSVVANKVNPEKLKAIEAAMGQIEKQFGKGSIMKLGEDSIL--NVESISTGSLDLDIALG 58

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG P+GRI+EI+GPESSGKTT+ALH +A++QK GG  AF+DAEHALD  YAR LGVD+ 
Sbjct: 59  IGGVPRGRIIEIFGPESSGKTTVALHILAEAQKIGGAAAFIDAEHALDPSYARNLGVDID 118

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL++SQPDTGEQALEIT+ LVRSGAVD+IV+DSVAAL PRAEIEG+MG+S  G+QARLMS
Sbjct: 119 NLIVSQPDTGEQALEITEALVRSGAVDVIVVDSVAALVPRAEIEGEMGDSHVGLQARLMS 178

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKL  SI++SKC+ +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+RR+ SIK
Sbjct: 179 QALRKLAGSINKSKCVAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRRIDSIK 238

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             D I GN+TRVK+ KNK+A PFK  EFDIMY EGIS  G ++D+GV+  +VDKSG+WFS
Sbjct: 239 QGDQILGNRTRVKINKNKVAPPFKMAEFDIMYNEGISKVGNILDVGVREELVDKSGSWFS 298

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           +K  RLGQGREN+K FL++N+ IA  IE+ +R+   L           N K+D  +
Sbjct: 299 YKDTRLGQGRENAKQFLKDNMNIALEIENTIRKKHDLPVVDAKNLNIENKKEDNKE 354


>gi|16803438|ref|NP_464923.1| recombinase A [Listeria monocytogenes EGD-e]
 gi|224499746|ref|ZP_03668095.1| recombinase A [Listeria monocytogenes Finland 1988]
 gi|224501659|ref|ZP_03669966.1| recombinase A [Listeria monocytogenes FSL R2-561]
 gi|254827659|ref|ZP_05232346.1| recombination protein recA [Listeria monocytogenes FSL N3-165]
 gi|254829843|ref|ZP_05234498.1| recombinase A [Listeria monocytogenes 10403S]
 gi|254898436|ref|ZP_05258360.1| recombinase A [Listeria monocytogenes J0161]
 gi|254912073|ref|ZP_05262085.1| DNA recombinase [Listeria monocytogenes J2818]
 gi|254936400|ref|ZP_05268097.1| recombination protein recA [Listeria monocytogenes F6900]
 gi|284801784|ref|YP_003413649.1| recombinase A [Listeria monocytogenes 08-5578]
 gi|284994926|ref|YP_003416694.1| recombinase A [Listeria monocytogenes 08-5923]
 gi|11387032|sp|Q9L723|RECA_LISMO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|7385129|gb|AAF61708.1|AF229031_1 RecA [Listeria monocytogenes]
 gi|22770564|gb|AAN06657.1|AF497229_1 DNA recombinase [Listeria monocytogenes]
 gi|22770566|gb|AAN06658.1|AF497230_1 DNA recombinase [Listeria monocytogenes]
 gi|22770590|gb|AAN06670.1|AF497242_1 DNA recombinase [Listeria monocytogenes]
 gi|22770592|gb|AAN06671.1|AF497243_1 DNA recombinase [Listeria monocytogenes]
 gi|16410827|emb|CAC99476.1| Recombination protein recA [Listeria monocytogenes EGD-e]
 gi|258600038|gb|EEW13363.1| recombination protein recA [Listeria monocytogenes FSL N3-165]
 gi|258608992|gb|EEW21600.1| recombination protein recA [Listeria monocytogenes F6900]
 gi|284057346|gb|ADB68287.1| recombinase A [Listeria monocytogenes 08-5578]
 gi|284060393|gb|ADB71332.1| recombinase A [Listeria monocytogenes 08-5923]
 gi|293590041|gb|EFF98375.1| DNA recombinase [Listeria monocytogenes J2818]
          Length = 348

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 198/344 (57%), Positives = 267/344 (77%), Gaps = 4/344 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GR
Sbjct: 1   MNDRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPD
Sbjct: 59  IIEVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            I++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR   +K    + GN
Sbjct: 179 VINKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK+A PF+  E DIMYGEGIS  GEL+D+  +  +++KSG+W+S+K +R+GQ
Sbjct: 239 KTKIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GREN+K +L+E+ +I + I   +R+   +  D   +EP    ++
Sbjct: 299 GRENAKQYLKEHTDIRDEISKRVREEYEI--DGSSKEPLDEKEE 340


>gi|50122291|ref|YP_051458.1| recombinase A [Pectobacterium atrosepticum SCRI1043]
 gi|59798238|sp|Q6D1S8|RECA_ERWCT RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|49612817|emb|CAG76267.1| RecA protein (recombinase A) [Pectobacterium atrosepticum SCRI1043]
          Length = 357

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 212/353 (60%), Positives = 276/353 (78%), Gaps = 2/353 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++T
Sbjct: 184 KQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N+  FL+EN  I+  ++  LR+      + L    A N+ D+ +       E
Sbjct: 304 ANACNFLKENPTISAELDKKLREMLLHKGNELKPAAAGNSHDEDELAGEGKEE 356


>gi|298346680|ref|YP_003719367.1| recombination protein A [Mobiluncus curtisii ATCC 43063]
 gi|304389611|ref|ZP_07371573.1| recombination protein A [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|315656854|ref|ZP_07909741.1| recombination protein A [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|298236741|gb|ADI67873.1| recombination protein A [Mobiluncus curtisii ATCC 43063]
 gi|304327164|gb|EFL94400.1| recombination protein A [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|315492809|gb|EFU82413.1| recombination protein A [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 370

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 204/338 (60%), Positives = 265/338 (78%), Gaps = 1/338 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +++KAL+ AL QI + +GKG++M+LG   ++   + V+ +GS+ LD+ALGIGG P+
Sbjct: 1   MAKDERAKALQTALGQIDKQFGKGSVMRLGD-SAVNTNVSVIPTGSVALDVALGIGGLPR 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTT+ALH +A +QK GG  AF+DAEHALD +YA+KLGVD+ NLL+SQ
Sbjct: 60  GRIIEIYGPESSGKTTVALHAVANAQKQGGNAAFIDAEHALDPVYAQKLGVDIDNLLVSQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI DML+RSG +DIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRK+
Sbjct: 120 PDTGEQALEIADMLIRSGGLDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKI 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T ++S +    +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+     
Sbjct: 180 TGALSATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKENGDAV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR K+VKNKMA PF+Q EFDIMYG+GIS  G LIDLGV + IV KSG+WF++   +L
Sbjct: 240 GNRTRAKIVKNKMAPPFRQAEFDIMYGQGISREGGLIDLGVDSGIVTKSGSWFTYGEMQL 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
           GQG+EN + FL +N E++  IE  +    G+  D   +
Sbjct: 300 GQGKENVRKFLVDNPELSAEIEDKILIALGVREDPNAE 337


>gi|117919575|ref|YP_868767.1| recombinase A [Shewanella sp. ANA-3]
 gi|166220681|sp|A0KU92|RECA_SHESA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|117611907|gb|ABK47361.1| recA protein [Shewanella sp. ANA-3]
          Length = 357

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 210/324 (64%), Positives = 266/324 (82%), Gaps = 2/324 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL A LSQI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P GRI
Sbjct: 5   PNKEKALAAVLSQIEKQFGKGSIMKLGEDRSM--DVETISTGSLSLDVALGAGGLPMGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDT
Sbjct: 63  VEIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  +
Sbjct: 123 GEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           + +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+
Sbjct: 183 LKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A+PFKQ EF I+YG+GI+  GEL+DLGV   +++K+GAW+S+KG ++GQG
Sbjct: 243 TRVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQ 333
           R N+  +L EN  IA  I+  LR+
Sbjct: 303 RANAGKYLTENPAIAAEIDKTLRE 326


>gi|308187886|ref|YP_003932017.1| Protein recA (Recombinase A) [Pantoea vagans C9-1]
 gi|308058396|gb|ADO10568.1| Protein recA (Recombinase A) [Pantoea vagans C9-1]
          Length = 356

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 217/352 (61%), Positives = 281/352 (79%), Gaps = 3/352 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD++NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIASAQRKGKTCAFIDAEHALDPVYAKKLGVDIENLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+ FGEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQIMYGEGINTFGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS-LLQEPAINTKDDADKDDTDN 361
            N+  FL+EN  +A  I+  LR+     AD  L        K+DA  +  ++
Sbjct: 304 SNAGNFLKENAAVANEIDLKLREMLLNGADEKLAAADKSAEKEDAASEANED 355


>gi|298368701|ref|ZP_06980019.1| recombinase A [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282704|gb|EFI24191.1| recombinase A [Neisseria sp. oral taxon 014 str. F0314]
          Length = 348

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 219/351 (62%), Positives = 279/351 (79%), Gaps = 6/351 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++       E ++V+S+GSLG+D+ALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKNFGKGSIMKM-DGSQQEENLDVISTGSLGVDLALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IAQ QK GG CAF+DAEHA D IYARKLGV ++ L +SQPDTG
Sbjct: 63  EIFGPESSGKTTLCLEAIAQCQKNGGICAFIDAEHAFDPIYARKLGVKVEELYLSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG VD++V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  I
Sbjct: 123 EQALEICDTLVRSGGVDMVVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGHI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+  ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G IK  D + GN+T
Sbjct: 183 KRTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGQIKKGDDVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV+KNK+A PF+Q EFDI+YGEG+S+ GELIDLGVK  IV+KSGAW+S+ G ++GQG+
Sbjct: 243 KVKVIKNKVAPPFRQAEFDILYGEGVSWEGELIDLGVKYDIVEKSGAWYSYNGAKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           +N +++L+EN EIA  I++ +R   G+  D           DD D +  + 
Sbjct: 303 DNVRVWLKENPEIANEIDAKIRAAVGINVDI-----TEGKLDDTDGERPEE 348


>gi|183601363|ref|ZP_02962733.1| recombinase A [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683419|ref|YP_002469802.1| recombinase A [Bifidobacterium animalis subsp. lactis AD011]
 gi|241191138|ref|YP_002968532.1| recombinase A [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196544|ref|YP_002970099.1| recombinase A [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183218969|gb|EDT89610.1| recombinase A [Bifidobacterium animalis subsp. lactis HN019]
 gi|219621069|gb|ACL29226.1| protein RecA [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249530|gb|ACS46470.1| recombinase A [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240251098|gb|ACS48037.1| recombinase A [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|289178883|gb|ADC86129.1| RecA [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295794127|gb|ADG33662.1| recombinase A [Bifidobacterium animalis subsp. lactis V9]
          Length = 382

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 207/362 (57%), Positives = 279/362 (77%), Gaps = 6/362 (1%)

Query: 4   RKEMNIVDKSK--ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           + E   VDK +  AL +AL+Q+++ +GKG+ M+LG +    + IEV+ +GSL LD ALGI
Sbjct: 14  KTEAPGVDKKREDALNSALAQVEKQFGKGSAMRLGDRPE--QDIEVIPTGSLALDTALGI 71

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GRIVEIYGPESSGKTTLALH +A +QK GG  AF+DAEHALD +YAR LGVD  +
Sbjct: 72  GGLPRGRIVEIYGPESSGKTTLALHVVANAQKNGGVAAFIDAEHALDPVYARHLGVDTDS 131

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEGDMG+S  G+QARLMSQ
Sbjct: 132 LIVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQ 191

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRK+T +++++    +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+DIRR+ ++KD
Sbjct: 192 ALRKMTGALAQANTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRMDIRRIQTLKD 251

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
           KD   GN+TRVKVVKNKMA PFK  EFD++YG+GIS  G ++D+ ++  +V KSG+WF++
Sbjct: 252 KDEPIGNRTRVKVVKNKMAPPFKTAEFDMLYGQGISQEGSILDMALETDVVRKSGSWFTY 311

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
            G++LGQGREN + FL +N ++AE I + ++   GL++     +  ++  ++ + +    
Sbjct: 312 NGEQLGQGRENVRKFLIDNPKLAEEISTQVKVKTGLISTD--DQFGVDGTEEENGESITT 369

Query: 362 VE 363
            E
Sbjct: 370 SE 371


>gi|70904874|gb|AAZ14016.1| RecA [Burkholderia cenocepacia]
          Length = 334

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 229/331 (69%), Positives = 285/331 (86%), Gaps = 1/331 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAKEDIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 120 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 180 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+ID GV+A IVDK+GAW+S+ G+++GQ
Sbjct: 240 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDFGVQAKIVDKAGAWYSYNGEKIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           G++N++ FLREN EIA  IE+ +R++ G+ A
Sbjct: 300 GKDNAREFLRENPEIALEIENRIRESLGVAA 330


>gi|209518322|ref|ZP_03267147.1| recA protein [Burkholderia sp. H160]
 gi|209501241|gb|EEA01272.1| recA protein [Burkholderia sp. H160]
          Length = 358

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 229/348 (65%), Positives = 291/348 (83%), Gaps = 1/348 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG++M+LG  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 12  TAEKSKALAAALAQIEKQFGKGSVMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLPRGR 70

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPD
Sbjct: 71  VVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVADLLVSQPD 130

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 131 TGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 190

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 191 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 250

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQ
Sbjct: 251 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQ 310

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           G++N++ FLREN +IA  IE+ +R++ G+ A +     A     D ++
Sbjct: 311 GKDNAREFLRENPDIAREIENRIRESLGVTAMAGAVTGADAEVADEEE 358


>gi|30141698|emb|CAD82857.1| RecA protein [Burkholderia fungorum]
          Length = 349

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 227/331 (68%), Positives = 286/331 (86%), Gaps = 1/331 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG++M+LG  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 9   TAEKSKALAAALAQIEKQFGKGSVMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLPRGR 67

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPD
Sbjct: 68  VVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPD 127

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 128 TGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 187

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 188 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 247

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQ
Sbjct: 248 ETRVKVVKNKVAPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQ 307

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           G++N++ FLREN +IA  IE+ +R++ G+ A
Sbjct: 308 GKDNAREFLRENPDIAREIENRIRESLGVNA 338


>gi|167835573|ref|ZP_02462456.1| recombinase A [Burkholderia thailandensis MSMB43]
          Length = 356

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 233/356 (65%), Positives = 295/356 (82%), Gaps = 3/356 (0%)

Query: 1   MDYRKEMN--IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIA 58
           M+  K+ +    +KSKAL AAL+QI++ +GKG+IM+LG  G   E I+VVS+GSLGLDIA
Sbjct: 1   MEESKKGSGLTAEKSKALAAALAQIEKQFGKGSIMRLGD-GEAVEDIQVVSTGSLGLDIA 59

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV+
Sbjct: 60  LGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDVQYASKLGVN 119

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +  LLISQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG++LPG+QARL
Sbjct: 120 VPELLISQPDTGEQALEIVDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDALPGLQARL 179

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRKLT SI R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GS
Sbjct: 180 MSQALRKLTGSIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGS 239

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW
Sbjct: 240 IKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAW 299

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           +S+ G+++GQG++N++ FLREN EIA +IE+ +R++ G+ A     + A    D+ 
Sbjct: 300 YSYNGEKIGQGKDNAREFLRENPEIARDIENRIRESLGVAAMPQGADSAAEIMDEE 355


>gi|53802433|ref|YP_112918.1| recA protein [Methylococcus capsulatus str. Bath]
 gi|59798161|sp|Q60BS8|RECA_METCA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|53756194|gb|AAU90485.1| recA protein [Methylococcus capsulatus str. Bath]
          Length = 347

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 217/325 (66%), Positives = 276/325 (84%), Gaps = 1/325 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AALSQI++ +GKG++M++G   ++   I+V+ +GSL LDIALG GG P+GRIV
Sbjct: 4   NKRKALGAALSQIEKQFGKGSVMRMGDVAAVR-DIDVIPTGSLALDIALGCGGLPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QKTGG  AFVDAEHALD +YA K+GV+L +LL+SQPDTG
Sbjct: 63  EIYGPESSGKTTLTLEVIAQAQKTGGVAAFVDAEHALDPVYAEKIGVNLDDLLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D+LVRSG VD++VIDSVAALTP+AE+EG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 123 EQALEIADVLVRSGGVDVVVIDSVAALTPKAELEGEMGDSHMGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T
Sbjct: 183 KRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRSGAIKNGDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+  +F+I+YGEGIS  GELIDLGV   IV KSG+W+S+ G R+GQG+
Sbjct: 243 RVKVVKNKVAPPFRTADFEILYGEGISREGELIDLGVNHDIVQKSGSWYSYGGDRIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
           +N +I+L+E+ E+A  IE+ +R+ A
Sbjct: 303 DNVRIYLKEHPEVAAAIEAAVREKA 327


>gi|319942901|ref|ZP_08017184.1| recombination protein A [Lautropia mirabilis ATCC 51599]
 gi|319743443|gb|EFV95847.1| recombination protein A [Lautropia mirabilis ATCC 51599]
          Length = 367

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 218/337 (64%), Positives = 272/337 (80%), Gaps = 1/337 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG++M++   G +   IEVVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 19  QIEKQFGKGSVMRMAD-GEVAPDIEVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 77

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGTCAF+DAEHALD  YA KLGV L  LLISQPDTGEQALEI D LV
Sbjct: 78  TLTLQVIAEMQKLGGTCAFIDAEHALDVQYAAKLGVRLPELLISQPDTGEQALEICDALV 137

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG+VD++V+DSVAALTPRAEIEGDMG++LPG+QARLMSQALRKLT SI R+  +++FIN
Sbjct: 138 RSGSVDLVVVDSVAALTPRAEIEGDMGDALPGLQARLMSQALRKLTGSIQRTNTLVIFIN 197

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK  D I GN+TRVKVVKNK++ 
Sbjct: 198 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKKGDEIIGNETRVKVVKNKVSP 257

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PFK  EFDI+YGEG S  GE++DLGV    V+KSGAW+S+ G+R+GQG++N++ +LRE  
Sbjct: 258 PFKSAEFDILYGEGTSREGEILDLGVTHGFVEKSGAWYSYNGERIGQGKDNAREYLREKP 317

Query: 322 EIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           E+A  IE+ +R+  G+       +P ++ +      +
Sbjct: 318 ELALEIENRIREAVGVSTRGEAPQPVVDAEGAEPAAE 354


>gi|308212820|gb|ADO21638.1| RecA [Burkholderia sp. HT16]
 gi|308212822|gb|ADO21639.1| RecA [Burkholderia sp. HT21]
 gi|308212824|gb|ADO21640.1| RecA [Burkholderia sp. HT80]
 gi|308212826|gb|ADO21641.1| RecA [Burkholderia sp. HT81]
 gi|308212828|gb|ADO21642.1| RecA [Burkholderia sp. HT83]
          Length = 325

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 222/319 (69%), Positives = 278/319 (87%), Gaps = 1/319 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           +QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGK
Sbjct: 1   AQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK 59

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD L
Sbjct: 60  TTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDAL 119

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FI
Sbjct: 120 VRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFI 179

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++
Sbjct: 180 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVS 239

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
            PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN
Sbjct: 240 PPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLREN 299

Query: 321 IEIAENIESLLRQNAGLVA 339
            EIA  IE+ +R++ G+VA
Sbjct: 300 PEIAREIENRIRESLGVVA 318


>gi|417636|sp|P32725|RECA_RHOS4 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|288349|emb|CAA51258.1| recA [Rhodobacter sphaeroides]
          Length = 343

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 234/343 (68%), Positives = 287/343 (83%), Gaps = 1/343 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KALE+AL+QI+R +GKG+IM+LG+   + E IE  S+GSLGLDIALGIGG PKGRI
Sbjct: 1   MDKAKALESALAQIERQFGKGSIMKLGANSPVME-IEATSTGSLGLDIALGIGGLPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YA+KLGV+L  LLISQPDT
Sbjct: 60  IEIYGPESSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAV++IV+DSVAALTP++EIEGDMG+   G QARLMSQA+RKLT+S
Sbjct: 120 GEQALEIVDTLVRSGAVNLIVVDSVAALTPKSEIEGDMGDMQMGSQARLMSQAMRKLTAS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I RS C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD+D++ GN 
Sbjct: 180 IGRSNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDRDNVIGNT 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           T+VKVVKNK+A PF++VEFDIMYGEGIS  GEL+DLGVKA +V+KSG+W+S+  +R+GQG
Sbjct: 240 TKVKVVKNKVAPPFREVEFDIMYGEGISKTGELVDLGVKAGVVEKSGSWYSYGDERIGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           REN+K FLR N  +A +IE  +R + GL   +       +  D
Sbjct: 300 RENAKAFLRANPTVAGDIEDRIRASHGLDFSTGEDGKGDDLVD 342


>gi|330720883|gb|EGG99071.1| RecA protein [gamma proteobacterium IMCC2047]
          Length = 343

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 221/341 (64%), Positives = 274/341 (80%), Gaps = 2/341 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL+ ALSQI + +GKG++M++G Q      +  +S+GSLGLDIALGIGG PKGRI+
Sbjct: 4   NKQRALDMALSQIDKQFGKGSVMRMGDQER--PNVPAISTGSLGLDIALGIGGLPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK GGT AF+DAEHALD  YA+K+GVD+ NLL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAEAQKAGGTAAFIDAEHALDPDYAQKIGVDVDNLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVDI+VIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRK+T ++
Sbjct: 122 EQALEIADALVRSGAVDILVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKMTGNV 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+T
Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFKQ EF IMYG+GI   GELIDLGVK  +V K+GAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKMAPPFKQTEFQIMYGKGIFRMGELIDLGVKQGLVGKAGAWYSYQGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
            N+  FL +N  +AE IE  +R         +  E     +
Sbjct: 302 ANAAQFLNDNPTVAEEIEGQIRAALLGDVTPVKDEGIEEVE 342


>gi|225076519|ref|ZP_03719718.1| hypothetical protein NEIFLAOT_01567 [Neisseria flavescens
           NRL30031/H210]
 gi|241760080|ref|ZP_04758178.1| protein RecA [Neisseria flavescens SK114]
 gi|261380311|ref|ZP_05984884.1| protein RecA [Neisseria subflava NJ9703]
 gi|319638110|ref|ZP_07992874.1| RecA protein [Neisseria mucosa C102]
 gi|224952198|gb|EEG33407.1| hypothetical protein NEIFLAOT_01567 [Neisseria flavescens
           NRL30031/H210]
 gi|241319534|gb|EER55964.1| protein RecA [Neisseria flavescens SK114]
 gi|284796826|gb|EFC52173.1| protein RecA [Neisseria subflava NJ9703]
 gi|317400755|gb|EFV81412.1| RecA protein [Neisseria mucosa C102]
          Length = 348

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 218/351 (62%), Positives = 279/351 (79%), Gaps = 6/351 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++       E ++V+S+GSLG+D+ALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKNFGKGSIMKM-DGSQQEENLDVISTGSLGVDLALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IAQ QK GG CAF+DAEHA D IYARKLGV ++ L +SQPDTG
Sbjct: 63  EIFGPESSGKTTLCLEAIAQCQKNGGICAFIDAEHAFDPIYARKLGVKVEELYLSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG +D++V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  I
Sbjct: 123 EQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGHI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+  ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G IK  D + GN+T
Sbjct: 183 KRTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGQIKKGDDVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV+KNK+A PF+Q EFDI+YGEGIS+ GELIDLGVK  IV+KSGAW+S+ G ++GQG+
Sbjct: 243 KVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDLGVKHDIVEKSGAWYSYNGAKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           +N +++L+EN +IA  I++ +R   G+  D           DD D +  + 
Sbjct: 303 DNVRVWLKENPDIANEIDAKIRAAVGINVDI-----TEGKLDDTDGERPEE 348


>gi|157326933|gb|ABV44579.1| RecA [Burkholderia multivorans]
          Length = 322

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 222/318 (69%), Positives = 277/318 (87%), Gaps = 1/318 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LV
Sbjct: 60  TLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FIN
Sbjct: 120 RSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ 
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN 
Sbjct: 240 PFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENP 299

Query: 322 EIAENIESLLRQNAGLVA 339
           EIA  IE+ +R++ G+ A
Sbjct: 300 EIAREIENRIRESLGVAA 317


>gi|225936983|emb|CAJ82776.2| recA recombinase [Enterococcus phoeniculicola]
          Length = 347

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 206/340 (60%), Positives = 267/340 (78%), Gaps = 2/340 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ YGKG+IM+LG +  I + I V+ SGSL LD+ALG+GG+P+GRIV
Sbjct: 4   DRKAALDAALKRIEKNYGKGSIMKLGEK--IDQQISVIPSGSLALDVALGVGGYPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+VIDSVAAL PRAEI+G+MG+S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVIDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEVTPGGRALKFYATIRLEVRRAEQLKQGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E D+MYG GIS  GEL+D+ V+  IVDKSGAW+S+K +R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEVDMMYGLGISQEGELLDMAVEKDIVDKSGAWYSYKEERIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           EN KI++ E+ E+   I + +R+  G+   S L E     
Sbjct: 302 ENVKIYMSEHPEMMAEISARVREAYGIGDGSTLVEEGQEE 341


>gi|50250475|emb|CAH03857.1| RecA protein [Pseudomonas stutzeri]
          Length = 347

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 215/345 (62%), Positives = 274/345 (79%), Gaps = 2/345 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI++ +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKRALAAALGQIEKQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAEAQKMGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDTHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE+IDLGV+  +V+KSGAW+++KG ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYRNGEVIDLGVQQGLVEKSGAWYAYKGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            N+  +L +N EI   IE  +R    +V+             DAD
Sbjct: 302 ANAAKYLEDNPEIGREIEQQIRDKLLVVSGGSKANVVTEDLADAD 346


>gi|4566895|gb|AAD23510.1|AF117881_1 RecA protein [Vibrio cholerae]
          Length = 346

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 206/340 (60%), Positives = 270/340 (79%), Gaps = 2/340 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GP
Sbjct: 1   LAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 ICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+ N+  
Sbjct: 239 KNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACK 298

Query: 316 FLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           +L+EN EIA+ ++  LR+      +  L     +  DD +
Sbjct: 299 YLKENPEIAKTLDKKLREMLLNPENMQLTGETASAADDVE 338


>gi|266895|sp|Q01953|RECA_PSEFL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|151530|gb|AAA25980.1| putative [Pseudomonas fluorescens]
          Length = 352

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 217/350 (62%), Positives = 273/350 (78%), Gaps = 2/350 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE+IDLGV    V+KSGAW+++ G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
            NS  FL +N +I   +E  +R      A  +         ++ ++ DTD
Sbjct: 302 ANSAKFLADNPDIVATLEKQIRDKLLTPAPDVKAAANREPVEEVEEADTD 351


>gi|297569858|ref|YP_003691202.1| recA protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296925773|gb|ADH86583.1| recA protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 366

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 201/356 (56%), Positives = 271/356 (76%), Gaps = 2/356 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M      +  +KSK L++A+ QIQ+ +GKG+IM+LG+   +   +  +S+G L LDIA G
Sbjct: 1   MANVAADDKGNKSKTLDSAIFQIQKQFGKGSIMRLGADERV--AVPAISTGILSLDIATG 58

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG P+GRI+E+YGPESSGKTTLAL  IA +Q+ GG  AF+DAEHALD  YA +LGV+  
Sbjct: 59  IGGIPRGRIIEVYGPESSGKTTLALQIIASAQRQGGAVAFIDAEHALDVTYAERLGVNAD 118

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +LLISQPD GEQALEI ++L+RSGAVD+IV+DSVAALTP+AEI+G++G++  G+QARLMS
Sbjct: 119 DLLISQPDYGEQALEIAEILIRSGAVDVIVVDSVAALTPKAEIDGNIGDTHVGLQARLMS 178

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           Q +RKL + + R+   ++FINQ+RMKIGVMFG+PETTTGGNALKFYSS+R+DIRR+ +IK
Sbjct: 179 QTMRKLAAILQRTNTAIIFINQIRMKIGVMFGNPETTTGGNALKFYSSMRIDIRRMTAIK 238

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D + + GN+ + K+VKNK+A PFK  EFDI++GEG S  G+L+DL V  +I+DKSGAW+S
Sbjct: 239 DGEEVIGNRVKAKLVKNKVAPPFKVAEFDIIFGEGSSREGDLLDLAVGQNIIDKSGAWYS 298

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           + G+R+GQGRENSK +LRE+ E+A+ IE  +R   GL      +E         + 
Sbjct: 299 YNGERIGQGRENSKQYLREHPELADEIERKVRLGFGLPMPGESREMPAEEAPGQEG 354


>gi|61215058|sp|Q6XZ07|RECA_VIBNA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|37781765|gb|AAO18662.1| recombinase A [Vibrio natriegens]
          Length = 348

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 205/348 (58%), Positives = 278/348 (79%), Gaps = 4/348 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FI Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T
Sbjct: 182 KQSNCMCIFIKQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GEL+DLGVK  +V+K+GAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKAGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            N+  +LRE+ E+A+ I+  LR+   L++ ++ + P      +  +++
Sbjct: 302 ANACNYLREHTEVAQTIDKKLREM--LLSPAVAEGPEAGEMPEKKEEE 347


>gi|221632222|ref|YP_002521443.1| recA protein [Thermomicrobium roseum DSM 5159]
 gi|221156923|gb|ACM06050.1| recA protein [Thermomicrobium roseum DSM 5159]
          Length = 354

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 214/346 (61%), Positives = 274/346 (79%), Gaps = 1/346 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +D+ KALE A+SQI+R +GKGAIM++G   S  + ++V+ +G++ LD+ALG+GG P+GRI
Sbjct: 1   MDRQKALELAISQIERSFGKGAIMRMGEDPSKLQ-VDVIPTGAIALDLALGVGGIPRGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
            EI+GPESSGKTTLALH IAQ+Q+ GG  A++DAEHA D +YA +LGVDL NLLISQPDT
Sbjct: 60  TEIFGPESSGKTTLALHVIAQAQRMGGIAAYIDAEHAFDPVYAERLGVDLDNLLISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEIT+ LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKLT +
Sbjct: 120 GEQALEITETLVRSGAVDVVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTGA 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ISRSK  ++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIR+V +IK+ +   G +
Sbjct: 180 ISRSKTAVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRKVDAIKEGNETVGTR 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            RVKVVKNK+A PF+Q EFDIMY EGIS  G L+D+     I+ KSGAW+    +RLGQG
Sbjct: 240 VRVKVVKNKVAPPFRQAEFDIMYNEGISVAGNLLDVATDLGIIRKSGAWYYLGEERLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           REN+K FL+ N E+   IE  +RQ A  +   +  + +   + DA+
Sbjct: 300 RENAKAFLKANPELMREIEQRIRQAAPELRGRIQYDGSAAEESDAE 345


>gi|152965460|ref|YP_001361244.1| recA protein [Kineococcus radiotolerans SRS30216]
 gi|189039597|sp|A6W841|RECA_KINRD RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|151359977|gb|ABS02980.1| recA protein [Kineococcus radiotolerans SRS30216]
          Length = 348

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 210/346 (60%), Positives = 275/346 (79%), Gaps = 3/346 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KAL+AAL+ I + +GKG++M+LG +  +   IEV+ +GS+ LD+ALGIGG P+GR+
Sbjct: 5   ADREKALDAALAAIDKNFGKGSVMRLGDE--VRPPIEVIPTGSISLDVALGIGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +QK GG  AF+DAEHALD  YA KLGVD   LL+SQPDT
Sbjct: 63  VEIYGPESSGKTTVALHAVASAQKAGGIAAFIDAEHALDPDYAAKLGVDTDALLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 123 GEQALEIADMLIRSGALDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD  +  GN+
Sbjct: 183 LNHSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTNPVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LIDLGV+   V KSGAW++++G +LGQG
Sbjct: 243 TRVKVVKNKVSPPFKQAEFDIIYGQGISREGGLIDLGVEHGFVRKSGAWYTYEGDQLGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           +EN++ FLR+N ++ + IE  +++  G+ A  L     ++ ++  D
Sbjct: 303 KENARAFLRDNPDLGDEIEKRIKEKLGIGA-RLDAPAEVDVEEKVD 347


>gi|328466107|gb|EGF37274.1| recombinase A [Listeria monocytogenes 1816]
          Length = 348

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 199/344 (57%), Positives = 267/344 (77%), Gaps = 4/344 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GR
Sbjct: 1   MNDRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPD
Sbjct: 59  IIEVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            I++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR   +K    + GN
Sbjct: 179 VINKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK+A PF+  E DIMYGEGIS  GEL+D+  +  +++KSG+W+S+K +R+GQ
Sbjct: 239 KTKIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GREN+K +L+E+ +I + I   +R+   +  D   +EP    K+
Sbjct: 299 GRENAKQYLKEHTDIRDEISKRVREEYEI--DGSNKEPLDEGKE 340


>gi|308212790|gb|ADO21623.1| RecA [Burkholderia arboris]
 gi|308212818|gb|ADO21637.1| RecA [Burkholderia arboris]
          Length = 323

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 223/318 (70%), Positives = 277/318 (87%), Gaps = 1/318 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LV
Sbjct: 60  TLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FIN
Sbjct: 120 RSGSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ 
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN 
Sbjct: 240 PFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNARGFLRENP 299

Query: 322 EIAENIESLLRQNAGLVA 339
           EIA  IE+ +R++ G+V+
Sbjct: 300 EIAREIENRIRESLGVVS 317


>gi|70904872|gb|AAZ14015.1| RecA [Burkholderia multivorans]
          Length = 318

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 222/318 (69%), Positives = 277/318 (87%), Gaps = 1/318 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LV
Sbjct: 60  TLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FIN
Sbjct: 120 RSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ 
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN 
Sbjct: 240 PFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENP 299

Query: 322 EIAENIESLLRQNAGLVA 339
           EIA  IE+ +R++ G+ A
Sbjct: 300 EIAREIENRIRESLGVAA 317


>gi|192362324|ref|YP_001982693.1| recombinase A [Cellvibrio japonicus Ueda107]
 gi|190688489|gb|ACE86167.1| recA protein [Cellvibrio japonicus Ueda107]
          Length = 353

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 212/346 (61%), Positives = 279/346 (80%), Gaps = 2/346 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL+AAL QI+R +GKG +M++G +  +   I  +S+GSLGLD+ALGIGG PKGRI
Sbjct: 8   ANKEKALQAALGQIERQFGKGTVMRMGDREQMV--IPAISTGSLGLDVALGIGGLPKGRI 65

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTL L  IA++Q+ GGTCAF+DAEHALD IYA KLGV++ +L++SQPDT
Sbjct: 66  IEIYGPESSGKTTLTLQVIAEAQRQGGTCAFIDAEHALDPIYATKLGVNVGDLIVSQPDT 125

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALE+TDMLVRSGA+D++V+DSVAALTPRAEIEG+MG+   G+QARLMSQALRK+T +
Sbjct: 126 GEQALEVTDMLVRSGAIDVLVVDSVAALTPRAEIEGEMGDHHVGLQARLMSQALRKITGN 185

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I  + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRRVG++K+ + + G++
Sbjct: 186 IKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRVGAVKEGEEVIGSE 245

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQ EF I+YG GI+  GE++D GVK  ++DK+GAW+S++G ++GQG
Sbjct: 246 TRVKVVKNKVAPPFKQAEFQILYGSGINRMGEIVDYGVKLGLIDKAGAWYSYQGNKIGQG 305

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           + N   FL+EN  IA+ +E  +R          L     +  D+A+
Sbjct: 306 KNNVIKFLQENQAIAQELEQKVRSELLATQALSLSAGGEDVSDEAE 351


>gi|31540559|gb|AAP49242.1| RecA [Mycobacterium phlei]
          Length = 321

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 202/319 (63%), Positives = 262/319 (82%), Gaps = 2/319 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE AL+QI++ +GKG+ M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 5   PDREKALELALAQIEKNHGKGSGMRLGEE--VHQPISVIPTGSIALDVALGIGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 63  IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 123 GEQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +S S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+
Sbjct: 183 LSNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTEAVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVK+VKNK++ PFKQ EFDI+YG GIS  G LID+GV+   + KSG+WF+++G++LGQG
Sbjct: 243 TRVKIVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVEQGFIRKSGSWFTYEGEQLGQG 302

Query: 310 RENSKIFLRENIEIAENIE 328
           +EN++ FL EN ++A  IE
Sbjct: 303 KENARNFLLENPDVANEIE 321


>gi|530270|emb|CAA50764.1| RecA [Vibrio cholerae]
          Length = 354

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 207/345 (60%), Positives = 270/345 (78%), Gaps = 2/345 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM LG   ++   +E +S+GSL LDI LG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMHLGDNRAM--DVETISTGSLSLDITLGSGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI GPESSGKTTL L  IA +Q+ G TCAF+D EHALD +YA+KLGV++  LL+SQPDTG
Sbjct: 62  EILGPESSGKTTLTLELIAAAQREGKTCAFIDTEHALDPVYAKKLGVNIDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            N+  +L+EN EIA+ ++  LR+      +  L     +  DD +
Sbjct: 302 ANACKYLKENPEIAKTLDKKLREMLLNPENMQLIAETSSAADDVE 346


>gi|307690446|ref|ZP_07632892.1| recombinase A [Clostridium cellulovorans 743B]
          Length = 350

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 206/351 (58%), Positives = 275/351 (78%), Gaps = 4/351 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             DK KA++AA++QI++ +GKGAIM LG    +   ++ + +G L LD+ALGIGG P+GR
Sbjct: 2   NDDKLKAIQAAMTQIEKQFGKGAIMTLGENSIL--DVDSIPTGCLALDVALGIGGVPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEIYGPESSGKTT+ALH +A++QK GG  AF+D EHALD  YAR++GV+ ++L++SQPD
Sbjct: 60  IVEIYGPESSGKTTVALHVVAEAQKQGGAAAFIDVEHALDPAYARRVGVNTEDLIVSQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEIT+ LVRSGAVD++++DSVAAL P+AEIEG+MG++  G+QARLMSQALRKL  
Sbjct: 120 TGEQALEITEALVRSGAVDVVIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLAG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           SI++SKC+++FINQ+R K+G+MFG+PETT GG ALKFY+SVRLDIR+  SIK  + + GN
Sbjct: 180 SINKSKCVVIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDIRKTDSIKQGEDVLGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KV+KNK+A PFK  EFDIMY EGIS  G ++D+GVK  IV KSGAWFS+   RLGQ
Sbjct: 240 RTKIKVIKNKVAPPFKLAEFDIMYNEGISKSGNILDVGVKEEIVQKSGAWFSYGDIRLGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAG--LVADSLLQEPAINTKDDADKD 357
           GREN+K F  EN E+A  +E+ +R+     L+  S + +      D+ D+D
Sbjct: 300 GRENAKQFFVENPELALEVENKIREKYNMPLIGLSDISKATEIVTDELDED 350


>gi|323527264|ref|YP_004229417.1| recA protein [Burkholderia sp. CCGE1001]
 gi|323384266|gb|ADX56357.1| recA protein [Burkholderia sp. CCGE1001]
          Length = 358

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 228/350 (65%), Positives = 295/350 (84%), Gaps = 3/350 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG++M+LG  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 12  TAEKSKALAAALAQIEKQFGKGSVMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLPRGR 70

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPD
Sbjct: 71  VVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPD 130

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 131 TGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 190

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 191 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 250

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQ
Sbjct: 251 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQ 310

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN +IA  IE+ +R++ G+  +++ +       + AD+++
Sbjct: 311 GKDNAREFLRENPDIAREIENRIRESLGV--NAMAEAVTGAGAEVADEEE 358


>gi|116119158|gb|ABJ74749.1| RecA [Burkholderia sp. M293]
          Length = 347

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 231/350 (66%), Positives = 294/350 (84%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 2   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 121 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A I DK+GAW+S+ G+++GQ
Sbjct: 241 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIADKAGAWYSYNGEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ G+V+   + +   N  +  D+++
Sbjct: 301 GKDNAREFLRENPEIAREIENRIRESLGVVS---MPDGVANEAEAMDEEE 347


>gi|30524996|emb|CAD70707.1| RecA protein [Burkholderia fungorum]
          Length = 348

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 227/331 (68%), Positives = 286/331 (86%), Gaps = 1/331 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG++M+LG  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 8   TAEKSKALAAALAQIEKQFGKGSVMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLPRGR 66

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPD
Sbjct: 67  VVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPD 126

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 127 TGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 186

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 187 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 246

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQ
Sbjct: 247 ETRVKVVKNKVAPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQ 306

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           G++N++ FLREN +IA  IE+ +R++ G+ A
Sbjct: 307 GKDNAREFLRENPDIAREIENRIRESLGVNA 337


>gi|11387037|sp|Q9RDU0|RECA_PSETO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|6689065|emb|CAB65373.1| recombination enzyme [Pseudomonas tolaasii]
          Length = 352

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 219/350 (62%), Positives = 274/350 (78%), Gaps = 2/350 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE+IDLGV    V+KSGAW+++ G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
            NS  FL +N +IA  +E  +R      A  +         D+ ++ DTD
Sbjct: 302 ANSAKFLADNPDIAATLEKQIRDKLLTAAPDVKAAANREPVDEMEEVDTD 351


>gi|311105063|ref|YP_003977916.1| protein RecA [Achromobacter xylosoxidans A8]
 gi|310759752|gb|ADP15201.1| protein RecA [Achromobacter xylosoxidans A8]
          Length = 354

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 223/333 (66%), Positives = 278/333 (83%), Gaps = 1/333 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+ G    +   I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 23  QIEKQFGKGSIMRYGDN-DVSHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 81

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  +A+ QK GGTCAFVDAEHALD  YA KLGV+L +LLISQPDTGEQALEITD LV
Sbjct: 82  TLTLQVVAEMQKLGGTCAFVDAEHALDVQYASKLGVNLADLLISQPDTGEQALEITDALV 141

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT++I ++ C+++FIN
Sbjct: 142 RSGSVDLIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFIN 201

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A 
Sbjct: 202 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKGDEVVGNETRVKVVKNKVAP 261

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PFKQ EFDIMYG GIS  GE+IDLGV A++VDKSGAW+S+ G R+GQG++N + +L+E+ 
Sbjct: 262 PFKQAEFDIMYGAGISREGEIIDLGVAANVVDKSGAWYSYNGNRIGQGKDNVREYLKEHK 321

Query: 322 EIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
            +A  IE+ +R+N G+V+ +    P      + 
Sbjct: 322 ALAIEIENRVRENQGIVSRAAEFVPTAEDTAEE 354


>gi|294668869|ref|ZP_06733959.1| protein RecA [Neisseria elongata subsp. glycolytica ATCC 29315]
 gi|291309166|gb|EFE50409.1| protein RecA [Neisseria elongata subsp. glycolytica ATCC 29315]
          Length = 365

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 215/340 (63%), Positives = 273/340 (80%), Gaps = 6/340 (1%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++       E +EVVS+GSLGLD+ALG+GG P+GRIVEI+GPESSGKT
Sbjct: 32  QIEKQFGKGSIMKM-DGSHQDEDLEVVSTGSLGLDLALGVGGLPRGRIVEIFGPESSGKT 90

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L TIAQ QK GG CAF+DAE+A D IYARKLGV ++ L++SQPDTGEQALEI DMLV
Sbjct: 91  TLCLETIAQCQKNGGVCAFIDAENAFDPIYARKLGVKVEELMVSQPDTGEQALEICDMLV 150

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG VD++VIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  I ++  ++VFIN
Sbjct: 151 RSGGVDMVVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGHIKKTNTLVVFIN 210

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR   IK  D + GN+T+VKV+KNK+A 
Sbjct: 211 QIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRGLQIKKGDDVIGNETKVKVIKNKVAP 270

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PF+Q EFDI+YGEG+S+ GELIDLGVK  IV+KSGAW+S+ G ++GQG++N +++L+EN 
Sbjct: 271 PFRQAEFDILYGEGVSWEGELIDLGVKYDIVEKSGAWYSYNGAKIGQGKDNVRVWLKENP 330

Query: 322 EIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           ++A  I+S +R  AG        E     +D+ D ++ + 
Sbjct: 331 DVANEIDSKIRAAAGTN-----IEITEGVRDETDGEEPEE 365


>gi|27364959|ref|NP_760487.1| recombinase A [Vibrio vulnificus CMCP6]
 gi|320155346|ref|YP_004187725.1| RecA protein [Vibrio vulnificus MO6-24/O]
 gi|30173260|sp|Q8DC51|RECA_VIBVU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|60393009|sp|Q7MHR4|RECA_VIBVY RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|27361105|gb|AAO10014.1| protein RecA [Vibrio vulnificus CMCP6]
 gi|319930658|gb|ADV85522.1| RecA protein [Vibrio vulnificus MO6-24/O]
          Length = 349

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 207/348 (59%), Positives = 281/348 (80%), Gaps = 3/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTG
Sbjct: 62  EIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDQLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +++KSGAW+S+ G ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKCKLIEKSGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            N+  +L+EN+++A+ +++ LR+   L   ++  E A   ++  ++++
Sbjct: 302 ANACKYLKENVDVAKVLDTKLREML-LSPANINDESAELVEEMPEQEE 348


>gi|38258437|sp|Q83TH4|RECA_LISSE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|30265989|gb|AAN15810.1| RecA [Listeria seeligeri]
 gi|30265991|gb|AAN15811.1| RecA [Listeria seeligeri]
 gi|56182513|gb|AAV84009.1| RecA [Listeria seeligeri]
 gi|56182515|gb|AAV84010.1| RecA [Listeria seeligeri]
 gi|56182517|gb|AAV84011.1| RecA [Listeria seeligeri]
 gi|56182519|gb|AAV84012.1| RecA [Listeria seeligeri]
 gi|56182521|gb|AAV84013.1| RecA [Listeria seeligeri]
 gi|56182523|gb|AAV84014.1| RecA [Listeria seeligeri]
 gi|66735132|gb|AAY53807.1| RecA [Listeria seeligeri]
 gi|313633314|gb|EFS00165.1| protein RecA [Listeria seeligeri FSL N1-067]
 gi|313637916|gb|EFS03233.1| protein RecA [Listeria seeligeri FSL S4-171]
          Length = 348

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 197/350 (56%), Positives = 265/350 (75%), Gaps = 2/350 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GR
Sbjct: 1   MNDRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPD
Sbjct: 59  IIEVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR   +K    + GN
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK+A PF+  E DIMYGEGIS  GEL+D+  +  +++KSG+W+S+K +R+GQ
Sbjct: 239 KTKIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           GREN+K +L+E+ +I + I   +R+   +   S               D+
Sbjct: 299 GRENAKQYLKEHTDIRDEISKRVREEYEIDGASKEPLEETEETLSLLDDE 348


>gi|4894746|gb|AAD32599.1|AF127333_1 RecA [Xenorhabdus nematophila]
          Length = 358

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 212/356 (59%), Positives = 269/356 (75%), Gaps = 2/356 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P G
Sbjct: 3   NDENKQKALAAALGQIEKQFGKGSIMRLGENRSM--DVETISTGSLSLDIALGAGGLPMG 60

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQP
Sbjct: 61  RIVEIYGPESSGKTTLTLQVIAAAQREGRTCAFIDAEHALDPVYAKKLGVDIDNLLCSQP 120

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL 
Sbjct: 121 DTGEQALEICDALSRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 180

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++  S  +L+FINQ+RMKIGVMFG+PET  GGNALKFY+SVRLDIRR GS+K+ D + G
Sbjct: 181 GNLKNSNTLLIFINQIRMKIGVMFGNPETPPGGNALKFYASVRLDIRRTGSVKNGDEVVG 240

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           ++TRVKVVKNK+A+PFKQ EF I+YGEGI+  GELIDL VK  +V+K+GAW+S+ G ++G
Sbjct: 241 SETRVKVVKNKVAAPFKQAEFQILYGEGINTLGELIDLSVKHKMVEKAGAWYSYNGDKIG 300

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           QG+ N+ I+L+E+ E A  +   LR              +    D  D  +  N E
Sbjct: 301 QGKANATIYLKEHPETAAELNKKLRDLLLHNTGDFSSAASDYVTDYEDNTEEVNNE 356


>gi|150171056|emb|CAO01511.1| DNA recombination protein [Burkholderia latens]
          Length = 341

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 233/339 (68%), Positives = 290/339 (85%), Gaps = 3/339 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VE
Sbjct: 2   KSKALAAALAQIEKQFGKGSIMRMGD-GEAKEDIQVVSTGSLGLDIALGVGGLPRGRVVE 60

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGE
Sbjct: 61  IYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGE 120

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I 
Sbjct: 121 QALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIK 180

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TR
Sbjct: 181 RTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETR 240

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++
Sbjct: 241 VKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKD 300

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVA--DSLLQEPAI 348
           N++ FLREN EIA  IE+ +R++ G+VA  D ++ E   
Sbjct: 301 NAREFLRENPEIAREIENRIRESLGVVAMPDGVVDEAEA 339


>gi|30141696|emb|CAD82856.1| RecA protein [Burkholderia fungorum]
          Length = 348

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 227/331 (68%), Positives = 286/331 (86%), Gaps = 1/331 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG++M+LG  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 8   TAEKSKALAAALAQIEKQFGKGSVMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLPRGR 66

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPD
Sbjct: 67  VVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPD 126

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 127 TGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 186

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 187 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 246

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQ
Sbjct: 247 ETRVKVVKNKVAPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQ 306

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           G++N++ FLREN +IA  IE+ +R++ G+ A
Sbjct: 307 GKDNAREFLRENPDIAREIENRIRESLGVNA 337


>gi|46907626|ref|YP_014015.1| recombinase A [Listeria monocytogenes str. 4b F2365]
 gi|47093404|ref|ZP_00231170.1| recA protein [Listeria monocytogenes str. 4b H7858]
 gi|217964455|ref|YP_002350133.1| protein RecA [Listeria monocytogenes HCC23]
 gi|226223999|ref|YP_002758106.1| Recombination protein recA [Listeria monocytogenes Clip81459]
 gi|254824542|ref|ZP_05229543.1| recA protein [Listeria monocytogenes FSL J1-194]
 gi|254932583|ref|ZP_05265942.1| recombinase A [Listeria monocytogenes HPB2262]
 gi|254991973|ref|ZP_05274163.1| recombinase A [Listeria monocytogenes FSL J2-064]
 gi|290894424|ref|ZP_06557385.1| recA protein [Listeria monocytogenes FSL J2-071]
 gi|300765752|ref|ZP_07075728.1| recA protein [Listeria monocytogenes FSL N1-017]
 gi|59798318|sp|Q71ZS2|RECA_LISMF RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|254790436|sp|B8DFS9|RECA_LISMH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|259563339|sp|C1L2V4|RECA_LISMC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|22770570|gb|AAN06660.1|AF497232_1 DNA recombinase [Listeria monocytogenes]
 gi|22770572|gb|AAN06661.1|AF497233_1 DNA recombinase [Listeria monocytogenes]
 gi|22770574|gb|AAN06662.1|AF497234_1 DNA recombinase [Listeria monocytogenes]
 gi|22770576|gb|AAN06663.1|AF497235_1 DNA recombinase [Listeria monocytogenes]
 gi|22770578|gb|AAN06664.1|AF497236_1 DNA recombinase [Listeria monocytogenes]
 gi|22770582|gb|AAN06666.1|AF497238_1 DNA recombinase [Listeria monocytogenes]
 gi|22770584|gb|AAN06667.1|AF497239_1 DNA recombinase [Listeria monocytogenes]
 gi|22770586|gb|AAN06668.1|AF497240_1 DNA recombinase [Listeria monocytogenes]
 gi|22770588|gb|AAN06669.1|AF497241_1 DNA recombinase [Listeria monocytogenes]
 gi|46880894|gb|AAT04192.1| recA protein [Listeria monocytogenes serotype 4b str. F2365]
 gi|47018231|gb|EAL08998.1| recA protein [Listeria monocytogenes str. 4b H7858]
 gi|217333725|gb|ACK39519.1| protein RecA [Listeria monocytogenes HCC23]
 gi|225876461|emb|CAS05170.1| Recombination protein recA [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|290556011|gb|EFD89564.1| recA protein [Listeria monocytogenes FSL J2-071]
 gi|293584142|gb|EFF96174.1| recombinase A [Listeria monocytogenes HPB2262]
 gi|293593781|gb|EFG01542.1| recA protein [Listeria monocytogenes FSL J1-194]
 gi|300513527|gb|EFK40598.1| recA protein [Listeria monocytogenes FSL N1-017]
 gi|307570980|emb|CAR84159.1| recombination protein [Listeria monocytogenes L99]
 gi|313608863|gb|EFR84641.1| protein RecA [Listeria monocytogenes FSL F2-208]
          Length = 348

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 198/344 (57%), Positives = 267/344 (77%), Gaps = 4/344 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GR
Sbjct: 1   MNDRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPD
Sbjct: 59  IIEVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            I++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR   +K    + GN
Sbjct: 179 VINKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK+A PF+  E DIMYGEGIS  GEL+D+  +  +++KSG+W+S+K +R+GQ
Sbjct: 239 KTKIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GREN+K +L+E+ +I + I   +R+   +  D   +EP    ++
Sbjct: 299 GRENAKQYLKEHTDIRDEISKRVREEYEI--DGSNKEPLDEGEE 340


>gi|186475208|ref|YP_001856678.1| recombinase A [Burkholderia phymatum STM815]
 gi|184191667|gb|ACC69632.1| recA protein [Burkholderia phymatum STM815]
          Length = 358

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 226/350 (64%), Positives = 296/350 (84%), Gaps = 3/350 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG++M+LG QG   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 12  TAEKSKALAAALAQIEKQFGKGSVMRLG-QGEAVEDIQVVSTGSLGLDIALGVGGLPRGR 70

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA+KLGV++ +LL+SQPD
Sbjct: 71  VVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAQKLGVNVSDLLVSQPD 130

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 131 TGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 190

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 191 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 250

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQ
Sbjct: 251 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQ 310

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN +IA  IE+ +R++ G+  +++     ++  ++  + +
Sbjct: 311 GKDNAREFLRENADIAREIENRIRESLGV--NAMPANAVVDADEEVGEAE 358


>gi|116872830|ref|YP_849611.1| recombinase A [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|38258436|sp|Q83TH3|RECA_LISWE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123463758|sp|A0AIK0|RECA_LISW6 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|30266001|gb|AAN15816.1| RecA [Listeria welshimeri]
 gi|30266003|gb|AAN15817.1| RecA [Listeria welshimeri]
 gi|55535654|gb|AAV52892.1| RecA [Listeria welshimeri]
 gi|116741708|emb|CAK20832.1| RecA protein (Recombinase A) [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 348

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 196/350 (56%), Positives = 265/350 (75%), Gaps = 2/350 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GR
Sbjct: 1   MNDRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPD
Sbjct: 59  IIEVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR   +K    + GN
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK+A PF+  E DIMYGEGIS  GEL+D+  +  +++KSG+W+S+K +R+GQ
Sbjct: 239 KTKIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           GREN+K +L+E+ +I + I   +R+   +   +               D+
Sbjct: 299 GRENAKQYLKEHTDIRDEISQRVREEYEIDGANKEPLEETEETLSLLDDE 348


>gi|56459851|ref|YP_155132.1| RecA recombinase [Idiomarina loihiensis L2TR]
 gi|76363333|sp|Q5QUB8|RECA_IDILO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|56178861|gb|AAV81583.1| RecA recombinase [Idiomarina loihiensis L2TR]
          Length = 372

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 224/347 (64%), Positives = 281/347 (80%), Gaps = 2/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+AAL QI+R +GKG+IM+LG   ++   I+ VS+GSLGLDIALGIGG P GR+V
Sbjct: 4   DRQKALDAALGQIERQFGKGSIMRLGDNQTL--DIDSVSTGSLGLDIALGIGGLPFGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ L  IA++QK G TCAFVDAEHALD IYA  LGV++ +LLISQPDTG
Sbjct: 62  EIYGPESSGKTTMTLEVIAEAQKMGKTCAFVDAEHALDPIYAEALGVNVDDLLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGAVDI+++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLTS+I
Sbjct: 122 EQALEICDMLVRSGAVDIVIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTSNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  + +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR G++K+ D + GN+T
Sbjct: 182 KKSNTMCIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGALKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK+  F I+YG+GIS  GELIDLGVK  +VDK+GAW+S+ G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFKEAHFQILYGKGISKEGELIDLGVKHKMVDKAGAWYSYNGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
            NS  FL++N +IA+ +E  +R+      +   +E     +  A +D
Sbjct: 302 ANSMKFLQDNPKIADELEGRIRELLLSKPEKRTKEIREAERAAAKED 348


>gi|224476413|ref|YP_002634019.1| recombinase A [Staphylococcus carnosus subsp. carnosus TM300]
 gi|254790446|sp|B9DPC5|RECA_STACT RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|222421020|emb|CAL27834.1| RecA protein (recombinase A) [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 355

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 208/352 (59%), Positives = 272/352 (77%), Gaps = 4/352 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+  +  +++ +GKGA+M+LG   +    +  +SSGS+ LD ALG+GG+PKGRIV
Sbjct: 4   ERQKALDTVIKNMEKSFGKGAVMKLGDNKARR--VSSISSGSVTLDNALGVGGYPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD +YA  LGVD+ NL +SQPD G
Sbjct: 62  EIYGPESSGKTTVALHAIAEVQKQGGVAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI +  VRSGAVDIIV+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 122 EQGLEIAEAFVRSGAVDIIVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S C  VFINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T
Sbjct: 182 SKSNCTAVFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G R+GQG+
Sbjct: 242 KIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           EN K +L+E+ EI ++I++ LRQ  G+    +  E     + +A+K++  N+
Sbjct: 302 ENVKNYLKEHPEIKQDIDNKLRQKLGIFDGDI--EEKDEKQAEAEKNENTNL 351


>gi|307730901|ref|YP_003908125.1| recA protein [Burkholderia sp. CCGE1003]
 gi|307585436|gb|ADN58834.1| recA protein [Burkholderia sp. CCGE1003]
          Length = 357

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 229/347 (65%), Positives = 291/347 (83%), Gaps = 1/347 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG++M+LG  G + E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 12  TAEKSKALAAALAQIEKQFGKGSVMRLG-AGEVVEDIQVVSTGSLGLDIALGVGGLPRGR 70

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPD
Sbjct: 71  VVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPD 130

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 131 TGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 190

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 191 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 250

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQ
Sbjct: 251 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQ 310

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           G++N++ FLREN +IA  IE+ +R++ G+ A +     A     D +
Sbjct: 311 GKDNAREFLRENPDIAREIENRIRESLGVNAMAEAVTGAGAEVADEE 357


>gi|297571228|ref|YP_003697002.1| recA protein [Arcanobacterium haemolyticum DSM 20595]
 gi|296931575|gb|ADH92383.1| recA protein [Arcanobacterium haemolyticum DSM 20595]
          Length = 348

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 205/330 (62%), Positives = 262/330 (79%), Gaps = 2/330 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           ++KALE AL QI R +GKG+ M+LG   +  + + V+ +GSL LD+ALGIGG P+GR+VE
Sbjct: 9   RAKALETALGQIDRQFGKGSAMRLGD--APPQRVSVIPTGSLALDVALGIGGLPRGRVVE 66

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH +A +QK GG  AFVDAEHALD  YARKLGVD   L++SQPDTGE
Sbjct: 67  IYGPESSGKTTVALHAVANAQKAGGIAAFVDAEHALDPEYARKLGVDTDALIVSQPDTGE 126

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DML+RSGA+DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT ++S
Sbjct: 127 QALEIADMLIRSGALDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALS 186

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
            +    +FINQ+R KIGV +G+PETTTGG ALKFY+SVRLD+RR+ ++K+  +  GN+TR
Sbjct: 187 AAGTTAIFINQLREKIGVFYGNPETTTGGKALKFYASVRLDVRRIETLKEGSTPVGNRTR 246

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNKMA PFKQ EFDI+YG+GIS  G +IDL V   IV +SG+W++++G +LGQG+E
Sbjct: 247 VKVVKNKMAPPFKQAEFDILYGKGISTEGGIIDLAVDTGIVRRSGSWYTYEGDQLGQGKE 306

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADS 341
            ++ FL +N EI++ IE  +    G+  D 
Sbjct: 307 KARQFLLDNPEISDEIERKVLATIGINKDG 336


>gi|294141936|ref|YP_003557914.1| recA protein [Shewanella violacea DSS12]
 gi|293328405|dbj|BAJ03136.1| recA protein [Shewanella violacea DSS12]
          Length = 352

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 217/354 (61%), Positives = 279/354 (78%), Gaps = 11/354 (3%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL A LSQI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P GRI
Sbjct: 5   ANKEKALNAVLSQIEKQFGKGSIMKLGENRSM--DVETISTGSLSLDVALGAGGLPLGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTL L  IA +Q+ G  CAF+DAEHALD IYA+KLGVD+ NLL SQPDT
Sbjct: 63  VEIYGPESSGKTTLTLEVIAAAQRQGRVCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  +
Sbjct: 123 GEQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           + ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IKD+D + GN+
Sbjct: 183 LKQTNTMLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKDRDEVIGNE 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A+PFKQ EF I+YG+GI+  GEL+DLGV   +V+K+GAW+S+KG ++GQG
Sbjct: 243 TRVKVVKNKIAAPFKQAEFQILYGKGINRTGELVDLGVIHKLVEKAGAWYSYKGNKIGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           R N+  +L E+ EI+  IE+ LR         LL  P  +  + A  D+  ++E
Sbjct: 303 RANAGKYLTEHPEISAEIETTLR-------GMLLASP--DAAESAAGDENVDLE 347


>gi|157326927|gb|ABV44576.1| RecA [Burkholderia cenocepacia]
          Length = 328

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 223/318 (70%), Positives = 277/318 (87%), Gaps = 1/318 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LV
Sbjct: 60  TLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FIN
Sbjct: 120 RSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ 
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN 
Sbjct: 240 PFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENP 299

Query: 322 EIAENIESLLRQNAGLVA 339
           EIA  IE+ +R++ G+VA
Sbjct: 300 EIAREIENRIRESLGVVA 317


>gi|254497510|ref|ZP_05110302.1| RecA protein [Legionella drancourtii LLAP12]
 gi|254353227|gb|EET11970.1| RecA protein [Legionella drancourtii LLAP12]
          Length = 348

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 221/346 (63%), Positives = 281/346 (81%), Gaps = 1/346 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AALSQI+R +GKG++M +G   S+   IE +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKQKALSAALSQIERQFGKGSVMLMGD-SSVSRDIEAISTGSLGLDIALGIGGLPKGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA+KLGV++  LL+SQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAECQKMGGTAAFIDAEHALDPSYAQKLGVNVDELLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I+IDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT++I
Sbjct: 123 EQALEITDMLVRSAAVDVIIIDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  + I G++T
Sbjct: 183 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGEEILGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK  EFDI+Y EGIS   E+I+L V+ ++++KSGAW+S+K +++GQG+
Sbjct: 243 RVKVVKNKVAPPFKMTEFDILYNEGISRESEIINLAVQLNLIEKSGAWYSYKQEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           +N +++L++N +IA ++E  +R        ++    + N  +  D 
Sbjct: 303 DNVRLYLKDNPQIAASLEQQIRSELLEKKQAMPAAVSDNEFETIDD 348


>gi|161523830|ref|YP_001578842.1| recombinase A [Burkholderia multivorans ATCC 17616]
 gi|221200152|ref|ZP_03573195.1| recA protein [Burkholderia multivorans CGD2M]
 gi|221206695|ref|ZP_03579707.1| recA protein [Burkholderia multivorans CGD2]
 gi|221211334|ref|ZP_03584313.1| recA protein [Burkholderia multivorans CGD1]
 gi|160341259|gb|ABX14345.1| recA protein [Burkholderia multivorans ATCC 17616]
 gi|221168695|gb|EEE01163.1| recA protein [Burkholderia multivorans CGD1]
 gi|221173350|gb|EEE05785.1| recA protein [Burkholderia multivorans CGD2]
 gi|221180391|gb|EEE12795.1| recA protein [Burkholderia multivorans CGD2M]
 gi|325520210|gb|EGC99384.1| recombinase A [Burkholderia sp. TJI49]
          Length = 357

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 232/341 (68%), Positives = 292/341 (85%), Gaps = 3/341 (0%)

Query: 1   MDYRKEMN--IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIA 58
           M+  K+ +    +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIA
Sbjct: 1   MEESKKGSGMTAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIA 59

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV+
Sbjct: 60  LGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVN 119

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           + +LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARL
Sbjct: 120 VPDLLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARL 179

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GS
Sbjct: 180 MSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGS 239

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW
Sbjct: 240 IKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAW 299

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +S+ G+++GQG++N++ FLREN EIA  IE+ +R++ G+ A
Sbjct: 300 YSYNGEKIGQGKDNAREFLRENPEIAREIENRIRESLGVAA 340


>gi|307132213|ref|YP_003884229.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Dickeya dadantii 3937]
 gi|306529742|gb|ADM99672.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Dickeya dadantii 3937]
          Length = 358

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 212/352 (60%), Positives = 279/352 (79%), Gaps = 3/352 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG+GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGVGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQRGGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ + + G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGEEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+ +GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINTYGELVDLGVKFKMIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
            N+  FL+EN  I+  ++  LR+   L  D+         + + D++    +
Sbjct: 304 ANACNFLKENPAISAELDKKLREML-LHKDNEAVPNVSGERAEYDEEAAGEL 354


>gi|254575570|gb|ACT68299.1| RecA [Burkholderia cepacia]
          Length = 347

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 230/350 (65%), Positives = 292/350 (83%), Gaps = 3/350 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 120 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 180 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGE IS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 240 ETRVKVVKNKVSPPFREAIFDILYGESISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN EIA  IE+ +R++ G+   S+      N  +  D+++
Sbjct: 300 GKDNAREFLRENPEIAREIENRIRESLGVA--SMPDGVVGNEAEAMDEEE 347


>gi|255066855|ref|ZP_05318710.1| protein RecA [Neisseria sicca ATCC 29256]
 gi|255048930|gb|EET44394.1| protein RecA [Neisseria sicca ATCC 29256]
          Length = 348

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 218/351 (62%), Positives = 279/351 (79%), Gaps = 6/351 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AAL+QI++ +GKG+IM++       E ++V+S+GSLG+D+ALG+GG P+GR+V
Sbjct: 4   EKSKALAAALAQIEKNFGKGSIMKM-DGSQQEENLDVISTGSLGVDLALGVGGLPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IAQ QK GG CAF+DAEHA D +YARKLGV ++ L +SQPDTG
Sbjct: 63  EIFGPESSGKTTLCLEAIAQCQKNGGICAFIDAEHAFDPVYARKLGVKVEELYLSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG VD++V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  I
Sbjct: 123 EQALEICDTLVRSGGVDMVVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGHI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+  ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G IK  D + GN+T
Sbjct: 183 KRTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGQIKKGDDVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV+KNK+A PF+Q EFDI+YGEG+S+ GELIDLGVK  IV+KSGAW+S+ G ++GQG+
Sbjct: 243 KVKVIKNKVAPPFRQAEFDILYGEGVSWEGELIDLGVKYDIVEKSGAWYSYNGAKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           +N +++L+EN EIA  I++ +R   G+  D           DD D +  + 
Sbjct: 303 DNVRVWLKENPEIANEIDAKIRAAVGINIDI-----TEGKLDDTDGERPEE 348


>gi|312132580|ref|YP_003999919.1| reca [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773522|gb|ADQ03010.1| RecA [Bifidobacterium longum subsp. longum BBMN68]
          Length = 418

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 203/340 (59%), Positives = 265/340 (77%), Gaps = 2/340 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
              K      +  AL+ AL+Q+++ +GKG+ M+LG Q    + +EV+ +GSL LD+ALGI
Sbjct: 34  AEDKHELDPKRKAALDTALAQVEKSFGKGSAMRLGDQPE--QNVEVIPTGSLALDMALGI 91

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG PKGRIVEIYGPESSGKTTLALH +A +QK GG  A++DAEHALD  YARKLGVD  +
Sbjct: 92  GGLPKGRIVEIYGPESSGKTTLALHVVANAQKKGGVSAYIDAEHALDPAYARKLGVDTDS 151

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQ
Sbjct: 152 LIVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQ 211

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRK+T +++++    +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLDIRR+ ++K+
Sbjct: 212 ALRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDIRRIQTLKN 271

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            D   GN+TRVKVVKNKMA PFK  EFD++YGEGIS  G +ID+  +  +V KSG+WF++
Sbjct: 272 GDEAVGNRTRVKVVKNKMAPPFKSAEFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTY 331

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           +G +LGQGRE  + FL++N  I E IE+ ++   GL+  +
Sbjct: 332 EGDQLGQGREKVRQFLKDNPAITEEIENKVKAEFGLIGSA 371


>gi|50084563|ref|YP_046073.1| recombinase A [Acinetobacter sp. ADP1]
 gi|1172879|sp|P42438|RECA_ACIAD RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|440089|gb|AAC27115.1| RecA [Acinetobacter sp. ADP1]
 gi|49530539|emb|CAG68251.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Acinetobacter sp. ADP1]
          Length = 349

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 219/353 (62%), Positives = 280/353 (79%), Gaps = 8/353 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL+AALSQI++ +GK  +M+LG      + +E VS+GSL LDIALGIGG PKGRIV
Sbjct: 4   NKSKALQAALSQIEKQFGKNTVMRLGDNT--VQAVEAVSTGSLTLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ L  IAQ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD G
Sbjct: 62  EIYGPESSGKTTMTLQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T + 
Sbjct: 122 EQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNA 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G +K+ D I G++T
Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIIGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNKMA PF++  F I+YG+G++  GEL+DL V+ +IV K+GAW+S++G ++GQG+
Sbjct: 242 KVKVVKNKMAPPFREAIFQILYGKGVNQLGELVDLAVQQNIVQKAGAWYSYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N   +L EN +I+  IE+++R+     A             D  +++ D +E
Sbjct: 302 NNVIRYLEENPQISTEIEAVIREQLLTKASDQTAAH------DETEEEPDLLE 348


>gi|294083658|ref|YP_003550415.1| RecA DNA recombination protein [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663230|gb|ADE38331.1| RecA DNA recombination protein [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 367

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 245/355 (69%), Positives = 301/355 (84%), Gaps = 1/355 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           +M   DK++ALEAA+ QI++ +GKG++M+LG + S    ++ +S+GSLGLDI LGIGGFP
Sbjct: 9   KMKDNDKNQALEAAIGQIEKAFGKGSVMKLGQRESAV-DVQSISTGSLGLDIGLGIGGFP 67

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALH +A++QK GG CAFVDAEHALD  YA+KLGV++ +LLIS
Sbjct: 68  KGRIVEIYGPESSGKTTLALHAVAEAQKEGGNCAFVDAEHALDPAYAKKLGVNIDDLLIS 127

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EG+MG+   G+QARLMSQALRK
Sbjct: 128 QPDAGEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDHHVGLQARLMSQALRK 187

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LTSSI+RS C+++FINQ+R+KIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IKD+D +
Sbjct: 188 LTSSIARSNCLVIFINQIRLKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKDRDEV 247

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GNQTRVKVVKNK+A+PF+ VEFDIMYGEGIS  GEL+DLGV A IV+KSGAW S+KG R
Sbjct: 248 VGNQTRVKVVKNKVAAPFRTVEFDIMYGEGISKMGELLDLGVAAGIVEKSGAWISYKGDR 307

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           LGQGREN+K FLREN EIA  IES +RQNAGLV D++L     ++ +    +  D
Sbjct: 308 LGQGRENAKNFLRENTEIANEIESAIRQNAGLVGDAMLDNSIADSPEADVPESPD 362


>gi|47678146|emb|CAF21836.1| RecA recombinase [Enterococcus pallens]
          Length = 350

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 203/344 (59%), Positives = 265/344 (77%), Gaps = 2/344 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  ALEAA+ +I++ YGKG+IM+LG +  I + I  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKAALEAAMKKIEKNYGKGSIMKLGDK--IDQQISTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTVALHAIAEVQKQGGTAAFIDAEHALDPQYAQHLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDIIVIDSVAAL PRAEI+G+MG S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIIVIDSVAALVPRAEIDGEMGASHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I VFINQ+R K+G+MFG+PETT GG ALKFY++VRL++RR   +K+   I GN+T
Sbjct: 182 NKTKTIAVFINQIREKVGIMFGNPETTPGGRALKFYATVRLEVRRAEQLKNGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+  +  I+DKSGAW+S+K +R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGQGISQEGELLDMAAEQDIIDKSGAWYSYKEERIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           EN+K +L E+ ++   + S +R   G+     + E       + 
Sbjct: 302 ENAKKYLAEHPDMTAEVSSRVRAAYGIGEPVEVPEDVEEPGQEE 345


>gi|59798289|sp|Q6LMU2|RECA_PHOPR RecName: Full=Protein RecA; AltName: Full=Recombinase A
          Length = 352

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 218/323 (67%), Positives = 265/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   IE VS+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMRLGDNKTM--DIETVSTGSLALDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +QK G TCAF+DAEHALD IYA+KLGVD+  LL SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLEVIASAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLCSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEIVDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+T
Sbjct: 182 KNANCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +V+K+GAW+S+KG ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKQAETQILYGQGFNRNGELIDLGVKHKLVEKAGAWYSYKGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            NS   L EN  IAE IE LLR 
Sbjct: 302 ANSCKHLVENPAIAEEIEKLLRD 324


>gi|253702323|ref|YP_003023512.1| recombinase A [Geobacter sp. M21]
 gi|259563337|sp|C6E6X6|RECA_GEOSM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|251777173|gb|ACT19754.1| recA protein [Geobacter sp. M21]
          Length = 338

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 211/326 (64%), Positives = 269/326 (82%), Gaps = 2/326 (0%)

Query: 7   MNIVDK-SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           M   DK  KAL+ A+SQI++ +GKGAIM+LG        I  + +GSL LDIALG+GG P
Sbjct: 1   MLDKDKAEKALDLAMSQIEKQFGKGAIMRLG-NEEALPDIASIPTGSLSLDIALGVGGVP 59

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GR++EI+GPESSGKTTLALH I+++QK GG  AFVDAEHALD  YARKLGV   +LL+S
Sbjct: 60  RGRVIEIFGPESSGKTTLALHVISEAQKLGGIAAFVDAEHALDIGYARKLGVKTDDLLVS 119

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEI + LVRSGA+D++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRK
Sbjct: 120 QPDTGEQALEIAETLVRSGAIDVLVVDSVAALVPKAEIEGDMGDSHMGLQARLMSQALRK 179

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT  IS+S C ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIR++ ++K  + +
Sbjct: 180 LTGIISKSNCCVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRKIAALKQGNDM 239

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            G++TRVKVVKNK+A PFK+VEFDI+YGEGIS  G+++DL V+ ++V+KSGAWFS+  +R
Sbjct: 240 IGSRTRVKVVKNKVAPPFKEVEFDILYGEGISKEGDILDLAVERNVVEKSGAWFSYGKER 299

Query: 306 LGQGRENSKIFLRENIEIAENIESLL 331
           +GQGRENS++FL+E+ EI   I   L
Sbjct: 300 IGQGRENSRLFLKEHPEITAEIREKL 325


>gi|157326949|gb|ABV44587.1| RecA [Burkholderia cenocepacia]
          Length = 319

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 222/319 (69%), Positives = 278/319 (87%), Gaps = 1/319 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           +QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGK
Sbjct: 1   AQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK 59

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD L
Sbjct: 60  TTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDAL 119

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FI
Sbjct: 120 VRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFI 179

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++
Sbjct: 180 NQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVS 239

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
            PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN
Sbjct: 240 PPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLREN 299

Query: 321 IEIAENIESLLRQNAGLVA 339
            EIA  IE+ +R++ G+V+
Sbjct: 300 PEIAREIENRIRESLGVVS 318


>gi|308212830|gb|ADO21643.1| RecA [Burkholderia sp. HT38]
 gi|308212832|gb|ADO21644.1| RecA [Burkholderia sp. HT58]
 gi|308212834|gb|ADO21645.1| RecA [Burkholderia sp. HT69]
          Length = 323

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 222/318 (69%), Positives = 277/318 (87%), Gaps = 1/318 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LV
Sbjct: 60  TLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FIN
Sbjct: 120 RSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ 
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN 
Sbjct: 240 PFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENP 299

Query: 322 EIAENIESLLRQNAGLVA 339
           EIA  IE+ +R++ G+VA
Sbjct: 300 EIAREIENRIRESLGVVA 317


>gi|289434680|ref|YP_003464552.1| RecA protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289170924|emb|CBH27466.1| RecA protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 348

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 198/350 (56%), Positives = 265/350 (75%), Gaps = 2/350 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  ALE AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GR
Sbjct: 1   MNDRQAALEQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPD
Sbjct: 59  IIEVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR   +K    + GN
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK+A PF+  E DIMYGEGIS  GEL+D+  +  +++KSG+W+S+K +R+GQ
Sbjct: 239 KTKIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           GREN+K +L+E+ +I + I   +R+   +   S               D+
Sbjct: 299 GRENAKQYLKEHTDIRDEISKRVREEYEIDGASKEPLEETEETLSLLDDE 348


>gi|70904909|gb|AAZ14032.1| RecA [Burkholderia vietnamiensis]
          Length = 316

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 222/317 (70%), Positives = 277/317 (87%), Gaps = 1/317 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESLLRQNAGLVA 339
           IA  IE+ +R++ G+VA
Sbjct: 300 IAREIENRIRESLGVVA 316


>gi|114562240|ref|YP_749753.1| recombinase A [Shewanella frigidimarina NCIMB 400]
 gi|122300464|sp|Q086A0|RECA_SHEFN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|114333533|gb|ABI70915.1| recA protein [Shewanella frigidimarina NCIMB 400]
          Length = 354

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 221/354 (62%), Positives = 277/354 (78%), Gaps = 9/354 (2%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL A LSQI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRI
Sbjct: 5   PNKEKALAAVLSQIEKQFGKGSIMKLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDT
Sbjct: 63  VEIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  +
Sbjct: 123 GEQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           + +S  +L+FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IKD D + GN+
Sbjct: 183 LKQSNTLLIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNE 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A+PFKQ EF I+YG+GI+  GEL+DLGV   +VDK+GAW+S+KG+++GQG
Sbjct: 243 TRVKVVKNKIAAPFKQAEFQILYGQGINRTGELVDLGVAHKLVDKAGAWYSYKGEKIGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           R N+  FL EN  IA  I + LR         LL   A ++    + D+  ++E
Sbjct: 303 RANAGKFLTENPVIASEINTTLRA-------MLLNGGANSSDSKTESDENIDLE 349


>gi|269213471|ref|ZP_05982028.2| protein RecA [Neisseria cinerea ATCC 14685]
 gi|269146183|gb|EEZ72601.1| protein RecA [Neisseria cinerea ATCC 14685]
          Length = 348

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 216/348 (62%), Positives = 281/348 (80%), Gaps = 3/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKSKAL AAL+QI++ +GKG+IM++       E +EV+S+GSLGLD+ALG+GG P+GRIV
Sbjct: 4   DKSKALAAALAQIEKSFGKGSIMKM-DGSQQEENLEVISTGSLGLDLALGVGGLPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  +AQ QK GG CAF+DAEHA D +YARKLGV ++ L +SQPDTG
Sbjct: 63  EIFGPESSGKTTLCLEAVAQCQKDGGVCAFIDAEHAFDPVYARKLGVKVEELYLSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG VD++V+DSVAAL P+AEIEGDMG+S  G+ ARLMSQALRKLT  I
Sbjct: 123 EQALEICDTLVRSGGVDMVVVDSVAALVPKAEIEGDMGDSHVGLHARLMSQALRKLTGHI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR G IK  + + GN+T
Sbjct: 183 KKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRAGQIKKGEEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV+KNK+A PF+Q EFDI+YGEG+S+ GELID+GVK  I++KSGAW+S+ G ++GQG+
Sbjct: 243 RVKVIKNKVAPPFRQAEFDILYGEGVSWEGELIDIGVKNDIINKSGAWYSYNGAKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           +N +++L+EN E+A+ I++ +R   G+  +  + E  ++  D    ++
Sbjct: 303 DNVRVWLKENPEVADEIDAKIRALNGV--EMHITEGKLDETDGERPEE 348


>gi|210615819|ref|ZP_03290800.1| hypothetical protein CLONEX_03018 [Clostridium nexile DSM 1787]
 gi|210150155|gb|EEA81164.1| hypothetical protein CLONEX_03018 [Clostridium nexile DSM 1787]
          Length = 347

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 197/343 (57%), Positives = 269/343 (78%), Gaps = 1/343 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           + M   DK KAL+AA+ ++++ +GKG +M+LG  G+    +E V +GSL LDIALG+GG 
Sbjct: 6   RNMANEDKQKALDAAILKLEKDFGKGTVMKLGDAGANV-SVETVPTGSLSLDIALGLGGV 64

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGR++E+YGPESSGKTT+ LH IA+ QK GG   F+DAEHALD +YA+ +GV++  L I
Sbjct: 65  PKGRVIEVYGPESSGKTTVTLHMIAEVQKRGGIAGFIDAEHALDPVYAKNIGVNIDELYI 124

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD+G+QALEI + +VRSGA+DIIVIDSVAAL P+ EIEGDMG+S  G+QARLMSQALR
Sbjct: 125 SQPDSGDQALEIAETMVRSGAMDIIVIDSVAALVPKQEIEGDMGDSHVGLQARLMSQALR 184

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT  IS+S C+++FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+D+RR+ ++K    
Sbjct: 185 KLTPVISKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASVRMDVRRIETLKQNGE 244

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + GN+TR+K+VKNK+A PFK+ EFDIM+G+GIS  G+++DL  K  +V+KSGAW+++ G 
Sbjct: 245 MVGNRTRIKIVKNKIAPPFKEAEFDIMFGKGISKEGDILDLATKLDLVNKSGAWYAYNGD 304

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           ++GQGREN+KI+L ++ EI E +E  +R +  L      +E  
Sbjct: 305 KIGQGRENAKIYLGQHPEIMEELEEKIRAHYHLDGSVEKEEEE 347


>gi|329296671|ref|ZP_08254007.1| recombinase A [Plautia stali symbiont]
          Length = 356

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 216/352 (61%), Positives = 281/352 (79%), Gaps = 4/352 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGG+ALKFY+SVRLDIRR+G+IK+ D + G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGHALKFYASVRLDIRRIGAIKEGDEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+ FGEL+DLGVK  +V+K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQIMYGEGINTFGELVDLGVKHKLVEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNA--GLVADSLLQEPAINTKDDADKDDTD 360
            N+  FL+EN  IA  ++  LR     G  A++   + A +  ++A + + D
Sbjct: 304 ANATNFLKENPAIANELDVKLRDMLLTGATAEAATADSAADKYEEASETNED 355


>gi|4566892|gb|AAD23507.1|AF117878_1 RecA protein [Vibrio cholerae]
 gi|4566893|gb|AAD23508.1|AF117879_1 RecA protein [Vibrio cholerae]
 gi|4566894|gb|AAD23509.1|AF117880_1 RecA protein [Vibrio cholerae]
 gi|4566896|gb|AAD23511.1|AF117882_1 RecA protein [Vibrio cholerae]
 gi|4566897|gb|AAD23512.1|AF117883_1 RecA protein [Vibrio cholerae]
          Length = 346

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 206/340 (60%), Positives = 270/340 (79%), Gaps = 2/340 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GP
Sbjct: 1   LAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 ICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+ N+  
Sbjct: 239 KNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACK 298

Query: 316 FLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           +L+EN EIA+ ++  LR+      +  L     +  DD +
Sbjct: 299 YLKENPEIAKTLDKKLREMLLNPENMQLIAETSSAADDVE 338


>gi|239787275|emb|CAX83753.1| RecA bacterial DNA recombination protein [uncultured bacterium]
          Length = 348

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 228/345 (66%), Positives = 274/345 (79%), Gaps = 2/345 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KALEAA+ QI+R +GKGAIM++   G I   + VVS+GSLGLDIALGIGG P+GR+V
Sbjct: 6   EREKALEAAIGQIERQFGKGAIMRM--DGDITVDVPVVSTGSLGLDIALGIGGLPRGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPE+SGKTTLALH  A+ Q+ GG  AFVDAEHALD  YARKLGV +  LL+SQPDTG
Sbjct: 64  EIYGPEASGKTTLALHVAAEVQRVGGVAAFVDAEHALDPAYARKLGVKVDQLLLSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEITDMLVRSGAVD++V+DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT SI
Sbjct: 124 EQGLEITDMLVRSGAVDLVVVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTGSI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SRSK I++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR   IK+KD + GN  
Sbjct: 184 SRSKAIVLFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRNAPIKEKDEVVGNHC 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF+  EFDI YGEGIS  GE++D+GV+  +V+KSGAW+S++G+R+GQGR
Sbjct: 244 KVKVVKNKLAPPFRSAEFDITYGEGISLEGEILDMGVEEKLVEKSGAWYSYEGERIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           E +K FL +N  +   +E  LR   GL         A  T    D
Sbjct: 304 EIAKRFLMDNPAMRNTLEDRLRVIKGLKPRHGGAPVAEATVATGD 348


>gi|47678128|emb|CAF21827.1| RecA recombinase [Enterococcus avium]
          Length = 349

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 201/348 (57%), Positives = 270/348 (77%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AA+ +I++ YGKG+IM+LG +  + + I  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKAALDAAMKKIEKNYGKGSIMKLGEK--VDQQISTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA++LGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKHGGTAAFIDAEHALDPQYAQRLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDIIVIDSVAAL PRAEI+G+MG++  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIIVIDSVAALVPRAEIDGEMGDAHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I VFINQ+R K+GVMFG+PETT GG ALKFY++VRL++RR   +K+   I GN+T
Sbjct: 182 NKTKTIAVFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKNGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG GIS  GEL+D+ V+  IVDKSGAW+ +K  R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGFGISQEGELLDMAVEQDIVDKSGAWYGYKEDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           EN+K +L ++ E+   + + +R   G+  +  + E     +++   D+
Sbjct: 302 ENAKKYLADHPEMMAEVATRVRAAYGIGEEGDVTEAEEAGQEELPLDE 349


>gi|308048572|ref|YP_003912138.1| recA protein [Ferrimonas balearica DSM 9799]
 gi|307630762|gb|ADN75064.1| recA protein [Ferrimonas balearica DSM 9799]
          Length = 346

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 225/348 (64%), Positives = 280/348 (80%), Gaps = 7/348 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI++ +GKG+IM+LG   ++   IE VS+GSLGLDIALGIGG P GRIV
Sbjct: 4   NKKRALSAALGQIEKQFGKGSIMRLGDATTL--DIESVSTGSLGLDIALGIGGLPYGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD +YA KLGV+++ LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAEAQKQGKTCAFVDAEHALDPVYAAKLGVNVEELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGAVD++++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 122 EQALEICDMLVRSGAVDVVIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  + VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++KD D + GN+T
Sbjct: 182 KRSNTLCVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKDGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EF I+YGEG S  GELIDLGV+  +++KSGAW+S++G+++GQG+
Sbjct: 242 RVKVVKNKVSPPFKQAEFQILYGEGTSKEGELIDLGVQQKLIEKSGAWYSYQGEKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            NS  FL+EN+ IA  IE             L   P    +D+ +  +
Sbjct: 302 ANSIRFLKENVAIANEIEK-----LLRDRLLLKAAPQAEDEDEVEAPE 344


>gi|300309990|ref|YP_003774082.1| recombinase A protein [Herbaspirillum seropedicae SmR1]
 gi|33860196|sp|Q9F672|RECA_HERSE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|21542498|gb|AAG13409.2|AF297289_1 SOS repair protein RecA [Herbaspirillum seropedicae]
 gi|300072775|gb|ADJ62174.1| recombinase A protein [Herbaspirillum seropedicae SmR1]
          Length = 351

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 225/337 (66%), Positives = 286/337 (84%), Gaps = 1/337 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD +K  N  +KSKAL AAL+QI++ +GKG++M++   G I E I+ VS+GSLGLDIALG
Sbjct: 1   MDDKKAANNSEKSKALAAALAQIEKQFGKGSVMRM-EDGVIAEEIQAVSTGSLGLDIALG 59

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG P+GR++EIYGPESSGKTTL L +IA+ QK GGTCAF+DAEHALD  YA+KLGV+L 
Sbjct: 60  IGGLPRGRVIEIYGPESSGKTTLTLQSIAEMQKLGGTCAFIDAEHALDVTYAQKLGVNLN 119

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +LLISQPDTGEQALEI D LVRSGAVD+IV+DSVAALTP+AEIEGDMG+SLPG+QARLMS
Sbjct: 120 DLLISQPDTGEQALEICDALVRSGAVDLIVVDSVAALTPKAEIEGDMGDSLPGLQARLMS 179

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT SI+R+   ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK
Sbjct: 180 QALRKLTGSINRTNTTVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIK 239

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             D + G++T+VKVVKNK+A PF++  FDI+YGEG S  GE++DLG +  +V+KSGAW+S
Sbjct: 240 SGDEVIGSETKVKVVKNKVAPPFREAHFDILYGEGTSREGEILDLGSEHKVVEKSGAWYS 299

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           + G+R+GQG++N++ +L+E+ E+A  IE+ +R   G+
Sbjct: 300 YNGERIGQGKDNARNYLKEHPELAREIENKVRVALGV 336


>gi|306836316|ref|ZP_07469296.1| recombination protein A [Corynebacterium accolens ATCC 49726]
 gi|304567787|gb|EFM43372.1| recombination protein A [Corynebacterium accolens ATCC 49726]
          Length = 378

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 215/371 (57%), Positives = 279/371 (75%), Gaps = 11/371 (2%)

Query: 1   MDYRKEMNIV-----DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGL 55
           M  +K+ +       D+ KAL+AA++ I++ YGKGA+M+LG        I+ +SSG+  +
Sbjct: 1   MATKKKSSSAATKGDDRQKALDAAMAMIEKDYGKGAVMRLGDDDR--PPIKAISSGNTAI 58

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALGIGGFP+GRIVEIYGPESSGKTT+ALH IA +QK GG  AF+DAEHALD  YAR L
Sbjct: 59  DVALGIGGFPRGRIVEIYGPESSGKTTVALHAIASAQKDGGIAAFIDAEHALDPQYARLL 118

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD  NLL+SQPDTGEQALEI DMLVRSGA+DIIV+DSVAALTP+AEIEG+MG+S  G+Q
Sbjct: 119 GVDTDNLLVSQPDTGEQALEIADMLVRSGAIDIIVVDSVAALTPKAEIEGEMGDSHVGLQ 178

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           ARLMSQALRK+T ++  S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVR DIRR
Sbjct: 179 ARLMSQALRKMTGALYNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRCDIRR 238

Query: 236 VGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           + ++KD     GN+T++KVVKNK++ PFK  EFDIMYGEGIS    +IDLGV+   + KS
Sbjct: 239 IQTLKDGQDAIGNRTKLKVVKNKVSPPFKIAEFDIMYGEGISRESSIIDLGVENGFIRKS 298

Query: 296 GAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA----INTK 351
           G+WF+++G +LGQG+E ++ FL++N ++A  IE  + Q  G+  ++   E A    +   
Sbjct: 299 GSWFTYEGDQLGQGKEKARSFLKDNPDLANEIEKKIFQKLGIGEEAANGEEATAMDVPGS 358

Query: 352 DDADKDDTDNV 362
           DD   D++ ++
Sbjct: 359 DDPLTDESVDL 369


>gi|152997733|ref|YP_001342568.1| recA protein [Marinomonas sp. MWYL1]
 gi|150838657|gb|ABR72633.1| recA protein [Marinomonas sp. MWYL1]
          Length = 358

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 218/353 (61%), Positives = 276/353 (78%), Gaps = 2/353 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AALSQI+R +GKGAIM++G    +   I+ VS+GSLGLDIALG GG P GRI 
Sbjct: 7   NKKKALDAALSQIERQFGKGAIMKMGEGAKL--DIDTVSTGSLGLDIALGAGGLPYGRIC 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAF+DAEHALD  YA KLGV++ +LLISQPDTG
Sbjct: 65  EIYGPESSGKTTLTLSVIAEAQKQGKTCAFIDAEHALDPSYAEKLGVNIADLLISQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS +VD+I++DSVAAL P++EIEG+MG S  G+QARL+SQA+RKLT SI
Sbjct: 125 EQALEIVDMLVRSNSVDVIIVDSVAALVPKSEIEGEMGSSSVGVQARLLSQAMRKLTGSI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GS+K  D + GN+T
Sbjct: 185 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKQGDEVIGNET 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF IMYG GI   GE+IDLGVK   VDK+GAW+++ G ++GQG+
Sbjct: 245 RVKVVKNKIAPPFKQAEFQIMYGAGIYRMGEVIDLGVKQGFVDKAGAWYAYNGNKIGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N+  FL +N E+A+ IE+ +R++         ++      D    ++ + ++
Sbjct: 305 ANAAQFLADNPEMAKEIEAKIREDLLPKKGQTDEKTNAKETDVEADEEAEQLD 357


>gi|121607356|ref|YP_995163.1| recombination protein RecA [Verminephrobacter eiseniae EF01-2]
 gi|121551996|gb|ABM56145.1| recA protein [Verminephrobacter eiseniae EF01-2]
          Length = 367

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 223/317 (70%), Positives = 275/317 (86%), Gaps = 1/317 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG IM+LG  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 28  QIEKQFGKGTIMRLGE-GEVIEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 86

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TLAL  IA+ QK GGTCAFVDAEHALD  YA+KLGV L +LLISQPDTGEQALEI D LV
Sbjct: 87  TLALQVIAEMQKQGGTCAFVDAEHALDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLV 146

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD+IV+DSVAALTP+AEIEGDMG++LPG+QARLMSQALRKLT++I ++ C++VFIN
Sbjct: 147 RSGAVDLIVVDSVAALTPKAEIEGDMGDALPGLQARLMSQALRKLTATIKKTNCMVVFIN 206

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK  D   GN+T+VKVVKNK++ 
Sbjct: 207 QIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSP 266

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PFK  EFDI++GEGIS  GE+ID+GV A IV+KSGAW+++ G+++GQGR+N++ FLREN 
Sbjct: 267 PFKTAEFDILFGEGISREGEIIDMGVNAKIVEKSGAWYAYNGEKIGQGRDNAREFLRENP 326

Query: 322 EIAENIESLLRQNAGLV 338
           ++A  IE+ +R + G+ 
Sbjct: 327 DLAHEIENKVRHSLGIA 343


>gi|148380359|ref|YP_001254900.1| recA protein [Clostridium botulinum A str. ATCC 3502]
 gi|153932434|ref|YP_001384579.1| recombinase A [Clostridium botulinum A str. ATCC 19397]
 gi|153937504|ref|YP_001388095.1| recombinase A [Clostridium botulinum A str. Hall]
 gi|148289843|emb|CAL83951.1| RecA protein [Clostridium botulinum A str. ATCC 3502]
 gi|152928478|gb|ABS33978.1| recA protein [Clostridium botulinum A str. ATCC 19397]
 gi|152933418|gb|ABS38917.1| recA protein [Clostridium botulinum A str. Hall]
          Length = 352

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 218/348 (62%), Positives = 276/348 (79%), Gaps = 2/348 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +K KA+EAA+ QI++ +GKG+IM+LG    +   +E +S+GSL LDIALGIGG P+GR
Sbjct: 6   NPEKLKAIEAAMGQIEKQFGKGSIMKLGEDSIL--NVESISTGSLDLDIALGIGGVPRGR 63

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EI+GPESSGKTT+ALH +A++QK GG  AF+DAEHALD  YAR LGVD+ NL++SQPD
Sbjct: 64  IIEIFGPESSGKTTVALHILAEAQKIGGAAAFIDAEHALDPSYARNLGVDIDNLIVSQPD 123

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEIT+ LVRSGAVD+IV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL  
Sbjct: 124 TGEQALEITEALVRSGAVDVIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAG 183

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           SI++SKC+ +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+RR+ SIK  D I GN
Sbjct: 184 SINKSKCVAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRRIDSIKQGDQILGN 243

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVK+ KNK+A PFK  EFDIMY EGIS  G ++D+GV+  +VDKSG+WFS+K  RLGQ
Sbjct: 244 RTRVKINKNKVAPPFKMAEFDIMYNEGISKVGNILDVGVREELVDKSGSWFSYKDTRLGQ 303

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           GREN+K FL++N+ IA  IE+ +R+   L           N K+D  +
Sbjct: 304 GRENAKQFLKDNMNIALEIENTIRKKHDLPVVDAKNLNIENKKEDNKE 351


>gi|322421556|ref|YP_004200779.1| recA protein [Geobacter sp. M18]
 gi|320127943|gb|ADW15503.1| recA protein [Geobacter sp. M18]
          Length = 338

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 208/319 (65%), Positives = 268/319 (84%), Gaps = 1/319 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            KAL+ ALSQI++ +GKGAIM+LG        +  + +GSL LD+ALG+GG P+GR++EI
Sbjct: 8   EKALDLALSQIEKQFGKGAIMRLG-NEEALPDVAAIPTGSLSLDLALGVGGVPRGRVIEI 66

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           +GPESSGKTTLALH I+++QK GG  AFVDAEHALD  YARKLGV   +LL+SQPDTGEQ
Sbjct: 67  FGPESSGKTTLALHVISEAQKLGGIAAFVDAEHALDIGYARKLGVKTDDLLVSQPDTGEQ 126

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEI + LVRSGA+D++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  IS+
Sbjct: 127 ALEIAETLVRSGAIDVLVVDSVAALVPKAEIEGDMGDSHMGLQARLMSQALRKLTGIISK 186

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           S C ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIR++ ++K  + + G++TRV
Sbjct: 187 SNCCVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRKIAALKQGNDMIGSRTRV 246

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK+A PFK+VEFDI+YGEGIS  G+++DL V+ ++V+KSGAWFS+  +R+GQGREN
Sbjct: 247 KVVKNKVAPPFKEVEFDILYGEGISKEGDVLDLAVERNVVEKSGAWFSYGKERIGQGREN 306

Query: 313 SKIFLRENIEIAENIESLL 331
           S++FL+E+ EI E I + L
Sbjct: 307 SRLFLKEHPEITEEIRAKL 325


>gi|322831419|ref|YP_004211446.1| recA protein [Rahnella sp. Y9602]
 gi|417635|sp|P33037|RECA_ENTAG RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|1209308|gb|AAA91766.1| recA [Pantoea agglomerans]
 gi|321166620|gb|ADW72319.1| recA protein [Rahnella sp. Y9602]
          Length = 354

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 214/353 (60%), Positives = 279/353 (79%), Gaps = 5/353 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDVVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GELIDLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELIDLGVKHKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            NS  +L+EN ++A  ++  LR    ++     +     T +DAD +   + E
Sbjct: 304 ANSCNYLKENPKVAAELDKKLRD---MLLSGTGELSVATTAEDADDNMETSEE 353


>gi|300854514|ref|YP_003779498.1| recombinase RecA [Clostridium ljungdahlii DSM 13528]
 gi|300434629|gb|ADK14396.1| recombinase RecA [Clostridium ljungdahlii DSM 13528]
          Length = 362

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 215/351 (61%), Positives = 282/351 (80%), Gaps = 8/351 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +A+E+A+ QI++ +GKGAIM+LG    +   ++ +S+G L LDIALGIGG P+GR++
Sbjct: 7   EKLQAIESAMGQIEKQFGKGAIMKLGEHSVL--NVDAISTGCLDLDIALGIGGVPRGRVI 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTT+ALH IA++QK GG  AF+DAEHALD  YA+ LGVD+ NL++SQPDTG
Sbjct: 65  EIFGPESSGKTTVALHIIAEAQKNGGAAAFIDAEHALDPSYAQNLGVDINNLIVSQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQA+EIT+ LVRS A+D++V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLTSSI
Sbjct: 125 EQAMEITEALVRSNAIDVLVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTSSI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SKC+ VFINQ+R K+GVMFG+PE T GG ALKFYSSVR+D+RR+ SIK  D+I GN+T
Sbjct: 185 NKSKCVTVFINQLREKVGVMFGNPEVTPGGRALKFYSSVRMDVRRIDSIKQGDTIVGNRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV+KNK+A PFKQ EFDIMY +GIS  G ++D+GV+  +V KSGAWFS+K  RLGQGR
Sbjct: 245 RVKVIKNKVAPPFKQAEFDIMYNQGISREGNVLDVGVREELVQKSGAWFSYKETRLGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           EN+K FL+EN +I   IES +R+   L +         N+ +D DK++ D+
Sbjct: 305 ENAKQFLKENNDILVEIESKIREKYKLPSLK------KNSLEDKDKNNVDS 349


>gi|33593529|ref|NP_881173.1| recombinase A [Bordetella pertussis Tohama I]
 gi|33597213|ref|NP_884856.1| recombinase A [Bordetella parapertussis 12822]
 gi|33601059|ref|NP_888619.1| recombinase A [Bordetella bronchiseptica RB50]
 gi|61230226|sp|P0A448|RECA_BORPE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|61230227|sp|P0A449|RECA_BORBR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|61230228|sp|P0A450|RECA_BORPA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|33572885|emb|CAE42821.1| RecA protein [Bordetella pertussis Tohama I]
 gi|33573640|emb|CAE37925.1| RecA protein [Bordetella parapertussis]
 gi|33575494|emb|CAE32572.1| RecA protein [Bordetella bronchiseptica RB50]
          Length = 353

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 227/332 (68%), Positives = 282/332 (84%), Gaps = 2/332 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           SQI++ +GKG+IM+ G    +   I+VVS+GSLGLDIALG+GG P+GR++E+YGPESSGK
Sbjct: 22  SQIEKQFGKGSIMRYGDN-EVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEVYGPESSGK 80

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA+ QK GGTCAFVDAEHALD  YA KLGV+L +LLISQPDTGEQALEITD L
Sbjct: 81  TTLTLQVIAEMQKLGGTCAFVDAEHALDVQYASKLGVNLTDLLISQPDTGEQALEITDAL 140

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT++I R+ C+++FI
Sbjct: 141 VRSGSVDLIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFI 200

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK  D + GN+TRVKVVKNK+A
Sbjct: 201 NQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKKGDEVVGNETRVKVVKNKVA 260

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
            PFKQ EFDIMYG GIS  GE+IDLGV+A++VDKSGAW+S+ G R+GQG++N + +L+E+
Sbjct: 261 PPFKQAEFDIMYGSGISREGEIIDLGVQANVVDKSGAWYSYSGNRIGQGKDNVREYLKEH 320

Query: 321 IEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
            E+A  IE+ +R+N G+V+      PA   +D
Sbjct: 321 KEMAIEIENKVRENQGIVS-RAATFPASEAED 351


>gi|157326977|gb|ABV44601.1| RecA [Burkholderia multivorans]
          Length = 315

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 221/316 (69%), Positives = 276/316 (87%), Gaps = 1/316 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           +QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGK
Sbjct: 1   AQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK 59

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD L
Sbjct: 60  TTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDAL 119

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FI
Sbjct: 120 VRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFI 179

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++
Sbjct: 180 NQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVS 239

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
            PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN
Sbjct: 240 PPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLREN 299

Query: 321 IEIAENIESLLRQNAG 336
            EIA  IE+ +R++ G
Sbjct: 300 PEIAREIENRIRESLG 315


>gi|187779003|ref|ZP_02995476.1| hypothetical protein CLOSPO_02598 [Clostridium sporogenes ATCC
           15579]
 gi|187772628|gb|EDU36430.1| hypothetical protein CLOSPO_02598 [Clostridium sporogenes ATCC
           15579]
          Length = 355

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 216/356 (60%), Positives = 277/356 (77%), Gaps = 2/356 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M         +K KA+EAA+ QI++ +GKG+IM+LG    +   +E +S+GSL LDIALG
Sbjct: 1   MSVLANKVNPEKLKAIEAAMGQIEKQFGKGSIMKLGEDSIL--NVESISTGSLDLDIALG 58

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG P+GRI+EI+GPESSGKTT+ALH +A++QK GG  AF+DAEHALD  YAR LGVD+ 
Sbjct: 59  IGGVPRGRIIEIFGPESSGKTTVALHILAEAQKIGGAAAFIDAEHALDPSYARNLGVDID 118

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL++SQPDTGEQALEIT+ LVRSGAVD+IV+DSVAAL PRAEIEG+MG++  G+QARLMS
Sbjct: 119 NLIVSQPDTGEQALEITEALVRSGAVDVIVVDSVAALVPRAEIEGEMGDTHVGLQARLMS 178

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKL  SI++SKC+ +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+RR+ SIK
Sbjct: 179 QALRKLAGSINKSKCVAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRRIDSIK 238

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             D I GN+TRVK+ KNK+A PFK  EFDIMY EGIS  G ++D+GV+  +V+KSG+WFS
Sbjct: 239 QGDQILGNRTRVKINKNKVAPPFKMAEFDIMYNEGISKVGNILDVGVREELVEKSGSWFS 298

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           +K  RLGQGREN+K FL++N+ IA  IE+ +R+   L           N K++  +
Sbjct: 299 YKDTRLGQGRENAKQFLKDNMNIALEIENTIRKKHDLPVVDAKNLNIENKKEENKE 354


>gi|159900707|ref|YP_001546954.1| recombinase A [Herpetosiphon aurantiacus ATCC 23779]
 gi|238687059|sp|A9AXA6|RECA_HERA2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|159893746|gb|ABX06826.1| recA protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 358

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 212/353 (60%), Positives = 269/353 (76%), Gaps = 3/353 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL AALSQI R +GKGAIM++  Q      IE + +GS+ LD+ALG+GG P+GR+
Sbjct: 5   PEKEKALAAALSQIDRQFGKGAIMRMSDQRL---SIEAIPTGSIALDLALGVGGIPRGRV 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTL  H +A++QK GG  AF+DAEHA D +YA   GV++++LL+SQPDT
Sbjct: 62  IEIYGPESSGKTTLTQHIVAETQKMGGVAAFIDAEHAFDPVYAANCGVNVEDLLVSQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + LVRSGA+D+IV+DSVAAL PRAEIEGDMG+S  G+QARLMSQALRKL+ +
Sbjct: 122 GEQALEICETLVRSGAIDVIVVDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKLSGA 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +S+S+  L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIR+V SIK    +TG +
Sbjct: 182 VSKSRTALIFINQLRMKIGVMFGNPETTTGGNALKFYASVRLDIRKVESIKQGQDVTGAR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            RVKVVKNK+A PF+Q EFDIMY EGIS  G ++D+GV   I+ KSGAWF     RLGQG
Sbjct: 242 ARVKVVKNKVAPPFRQAEFDIMYNEGISREGNIVDVGVTMEILRKSGAWFYLGDDRLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           REN+K FL++N  +A+ IE ++R  +     + +   A      A  DD D +
Sbjct: 302 RENAKQFLKDNPALADEIEKMIRAASPGAPTAKVIVGAAAANGAAPADDGDGI 354


>gi|406794|emb|CAA53084.1| RecA protein [Yersinia pestis]
          Length = 356

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 216/353 (61%), Positives = 277/353 (78%), Gaps = 3/353 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGDVVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKLKLIEKAGAWYSYYGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N+  +L+EN   A  ++  LR+   L   +  Q  A  T + AD  D  N E
Sbjct: 304 ANASNYLKENPANAAELDKKLREML-LNGGNGEQPVAAATAEFADGADETNEE 355


>gi|328957009|ref|YP_004374395.1| recombinase A [Carnobacterium sp. 17-4]
 gi|328673333|gb|AEB29379.1| recombinase A [Carnobacterium sp. 17-4]
          Length = 347

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 201/353 (56%), Positives = 265/353 (75%), Gaps = 10/353 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ +AL+AAL +I++ +GKG++M+LG +      I  V SGSL LD+ALG+GGFP+GRI+
Sbjct: 4   DRKQALDAALKKIEKNFGKGSVMKLGEKVDTR--ISTVPSGSLALDVALGVGGFPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A+ QK GG  AF+DAE+ALD  YA  LGVD+  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAVAEVQKQGGIAAFIDAENALDPKYAAALGVDIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR   IK    I GN+T
Sbjct: 182 NKTKTIALFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQIKQGTDIMGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYGEGIS  GEL+D+G    I+DK+GAW+S+ G+R+GQGR
Sbjct: 242 KIKVVKNKVAPPFRVAEVDIMYGEGISQVGELVDMGSDKDIIDKAGAWYSYGGERIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           EN+K F + N E+   +E  +R   G+             ++  +  +TD +E
Sbjct: 302 ENAKKFFKNNPELRAEVEQKVRAAYGIG--------EAGAEEVVEASETDLLE 346


>gi|22770568|gb|AAN06659.1|AF497231_1 DNA recombinase [Listeria monocytogenes]
          Length = 348

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 198/344 (57%), Positives = 267/344 (77%), Gaps = 4/344 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GR
Sbjct: 1   MNDRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPD
Sbjct: 59  IIEVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            I++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR   +K    + GN
Sbjct: 179 VINKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEXLKQGTDVMGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK+A PF+  E DIMYGEGIS  GEL+D+  +  +++KSG+W+S+K +R+GQ
Sbjct: 239 KTKIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GREN+K +L+E+ +I + I   +R+   +  D   +EP    ++
Sbjct: 299 GRENAKQYLKEHTDIRDEISKRVREEYEI--DGSSKEPLDEKEE 340


>gi|239999005|ref|ZP_04718929.1| recombinase A [Neisseria gonorrhoeae 35/02]
 gi|240014085|ref|ZP_04720998.1| recombinase A [Neisseria gonorrhoeae DGI18]
 gi|240016519|ref|ZP_04723059.1| recombinase A [Neisseria gonorrhoeae FA6140]
 gi|240080643|ref|ZP_04725186.1| recombinase A [Neisseria gonorrhoeae FA19]
 gi|240112992|ref|ZP_04727482.1| recombinase A [Neisseria gonorrhoeae MS11]
 gi|240115746|ref|ZP_04729808.1| recombinase A [Neisseria gonorrhoeae PID18]
 gi|240118042|ref|ZP_04732104.1| recombinase A [Neisseria gonorrhoeae PID1]
 gi|240121646|ref|ZP_04734608.1| recombinase A [Neisseria gonorrhoeae PID24-1]
 gi|240123596|ref|ZP_04736552.1| recombinase A [Neisseria gonorrhoeae PID332]
 gi|240125779|ref|ZP_04738665.1| recombinase A [Neisseria gonorrhoeae SK-92-679]
 gi|240128299|ref|ZP_04740960.1| recombinase A [Neisseria gonorrhoeae SK-93-1035]
 gi|260440443|ref|ZP_05794259.1| recombinase A [Neisseria gonorrhoeae DGI2]
          Length = 375

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 221/351 (62%), Positives = 282/351 (80%), Gaps = 6/351 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKSKAL AAL+QI++ +GKGAIM++       E +EV+S+GSLGLD+ALG+GG P+GRIV
Sbjct: 31  DKSKALAAALAQIEKSFGKGAIMKM-DGSQQEENLEVISTGSLGLDLALGVGGLPRGRIV 89

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  +AQ QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDTG
Sbjct: 90  EIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDTG 149

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG +D++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  I
Sbjct: 150 EQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGHI 209

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR GSIK  + + GN+T
Sbjct: 210 KKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNET 269

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+GVK  I++KSGAW+S+ G ++GQG+
Sbjct: 270 RVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQGK 329

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           +N +++L+EN EI++ I++ +R   G+            T+D+ D +  + 
Sbjct: 330 DNVRVWLKENPEISDEIDAKIRALNGV-----EMHITEGTQDETDGERPEE 375


>gi|197119991|ref|YP_002140418.1| recombinase A [Geobacter bemidjiensis Bem]
 gi|226723629|sp|B5ED05|RECA_GEOBB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|197089351|gb|ACH40622.1| recombinase A [Geobacter bemidjiensis Bem]
          Length = 338

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 211/326 (64%), Positives = 269/326 (82%), Gaps = 2/326 (0%)

Query: 7   MNIVDK-SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           M   DK  KAL+ A+SQI++ +GKGAIM+LG        I  + +GSL LDIALG+GG P
Sbjct: 1   MLDKDKAEKALDLAMSQIEKQFGKGAIMRLG-NEEALPDIASIPTGSLSLDIALGVGGVP 59

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GR++EI+GPESSGKTTLALH I+++QK GG  AFVDAEHALD  YARKLGV   +LL+S
Sbjct: 60  RGRVIEIFGPESSGKTTLALHVISEAQKLGGIAAFVDAEHALDIGYARKLGVKTDDLLVS 119

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEI + LVRSGA+D++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRK
Sbjct: 120 QPDTGEQALEIAETLVRSGAIDVLVVDSVAALVPKAEIEGDMGDSHMGLQARLMSQALRK 179

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT  IS+S C ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIR++ ++K  + +
Sbjct: 180 LTGIISKSNCCVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRKIAALKQGNDM 239

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            G++TRVKVVKNK+A PFK+VEFDI+YGEGIS  G+++DL V+ ++V+KSGAWFS+  +R
Sbjct: 240 IGSRTRVKVVKNKVAPPFKEVEFDILYGEGISKEGDILDLAVERNVVEKSGAWFSYGKER 299

Query: 306 LGQGRENSKIFLRENIEIAENIESLL 331
           +GQGRENS++FL+E+ EI   I   L
Sbjct: 300 IGQGRENSRLFLKEHPEITAEIREKL 325


>gi|239946715|ref|ZP_04698468.1| protein RecA [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239920991|gb|EER21015.1| protein RecA [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 362

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 223/345 (64%), Positives = 285/345 (82%), Gaps = 2/345 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K M+  DK +A+ AAL+QI++ YGKG++M+LG + ++   IE VS+GSLGLDIALGIGG 
Sbjct: 18  KFMSNTDKERAIAAALTQIEKSYGKGSVMKLGQRPNV--DIEAVSTGSLGLDIALGIGGV 75

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA+KLGV++  L+I
Sbjct: 76  PKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELII 135

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++    QARLMSQALR
Sbjct: 136 SQPDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALR 195

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ 
Sbjct: 196 KLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEE 255

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + G+QT+VKVVKNK++ PFK  +FDIMYG GIS  GE+IDLGVK  IV+KSG+WFS+   
Sbjct: 256 VIGSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYNNV 315

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
           R+GQGREN K +L+E+ +I+  IE ++R+ +  + +  L +    
Sbjct: 316 RIGQGRENVKQYLKEHPQISNEIEKIIREKSSKITNINLDQTKEE 360


>gi|153938095|ref|YP_001391702.1| recombinase A [Clostridium botulinum F str. Langeland]
 gi|152933991|gb|ABS39489.1| recA protein [Clostridium botulinum F str. Langeland]
 gi|295319730|gb|ADG00108.1| recA protein [Clostridium botulinum F str. 230613]
          Length = 352

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 218/348 (62%), Positives = 275/348 (79%), Gaps = 2/348 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +K KA+EAA+ QI++ +GKG+IM+LG    +   +E +S+GSL LDIALGIGG P+GR
Sbjct: 6   NPEKLKAIEAAMGQIEKQFGKGSIMKLGEDSIL--NVESISTGSLDLDIALGIGGVPRGR 63

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EI+GPESSGKTT+ALH +A++QK GG  AF+DAEHALD  YAR LGVD+ NL++SQPD
Sbjct: 64  IIEIFGPESSGKTTVALHILAEAQKIGGAAAFIDAEHALDPSYARNLGVDIDNLIVSQPD 123

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEIT+ LVRSGAVD+IV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL  
Sbjct: 124 TGEQALEITEALVRSGAVDVIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAG 183

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           SI++SKC+ +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+RR+ SIK  D I GN
Sbjct: 184 SINKSKCVAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRRIDSIKQGDQILGN 243

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVK+ KNK+A PFK  EFDIMY EGIS  G ++D+GV+  +VDKSG+WFS+K  RLGQ
Sbjct: 244 RTRVKINKNKVAPPFKMAEFDIMYNEGISKVGNILDVGVREELVDKSGSWFSYKDTRLGQ 303

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           GREN+K FL++N+ IA  IE+ +R+   L           N K D  +
Sbjct: 304 GRENAKQFLKDNMNIALEIENTIRKKHDLPVADAKNLNIENKKQDNKE 351


>gi|47678152|emb|CAF21839.1| RecA recombinase [Enterococcus ratti]
          Length = 346

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 199/340 (58%), Positives = 267/340 (78%), Gaps = 2/340 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ YGKG+IM+LG +  I + +  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKAALDAALKKIEKNYGKGSIMKLGEK--IDQQVSTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGA+DI+V+DSVAAL PRAEI+G+MG+S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAIDIVVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEVTPGGRALKFYATIRLEVRRAEQLKQGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E D+MYG+GIS  GEL+D+ V+  IVDKSGAW+S+K +R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKIAEVDVMYGQGISQEGELLDMAVEKDIVDKSGAWYSYKEERIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           EN+KI++  + E+   I +L+R   G+  + +  E     
Sbjct: 302 ENAKIYMANHPEMMAEISTLVRAAYGIGEEVVTSEEMQEE 341


>gi|330959233|gb|EGH59493.1| recombinase A [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 354

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 219/350 (62%), Positives = 276/350 (78%), Gaps = 5/350 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE++DL V    V+KSGAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYLNGEIVDLAVLHGFVEKSGAWYSYQGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNA---GLVADSLLQEPAINTKDDADKD 357
            NS  FL +N EI + +E  +R      G+   ++    A+ T D A+ D
Sbjct: 302 ANSAKFLADNPEICKALEKQIRDKLLTPGVDTKAVGSREAVVTDDVAEAD 351


>gi|54310166|ref|YP_131186.1| recombinase A [Photobacterium profundum SS9]
 gi|46914607|emb|CAG21384.1| putative RecA protein [Photobacterium profundum SS9]
          Length = 356

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 218/323 (67%), Positives = 265/323 (82%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   IE VS+GSL LDIALG GG P GRIV
Sbjct: 8   NKQKALAAALGQIEKQFGKGSIMRLGDNKTM--DIETVSTGSLALDIALGAGGLPMGRIV 65

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +QK G TCAF+DAEHALD IYA+KLGVD+  LL SQPDTG
Sbjct: 66  EIYGPESSGKTTLTLEVIASAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLCSQPDTG 125

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 126 EQALEIVDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 185

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+T
Sbjct: 186 KNANCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNET 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +V+K+GAW+S+KG ++GQG+
Sbjct: 246 RIKVVKNKIAAPFKQAETQILYGQGFNRNGELIDLGVKHKLVEKAGAWYSYKGNKIGQGK 305

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            NS   L EN  IAE IE LLR 
Sbjct: 306 ANSCKHLVENPAIAEEIEKLLRD 328


>gi|94501705|ref|ZP_01308220.1| recA protein [Oceanobacter sp. RED65]
 gi|94426192|gb|EAT11185.1| recA protein [Oceanobacter sp. RED65]
          Length = 362

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 218/328 (66%), Positives = 272/328 (82%), Gaps = 2/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+AALSQI+R +GKGAIM++G Q    E I  VS+GSL LDIALGIGG P GRIV
Sbjct: 4   NRQKALDAALSQIERQFGKGAIMKMGEQPR--EAIPSVSTGSLSLDIALGIGGLPFGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ L  +A++QK G T A VDAEHALD  YA KLGVDL +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTMCLSAMAEAQKDGKTVAIVDAEHALDPSYAEKLGVDLDSLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRS AVD+IV+DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT+++
Sbjct: 122 EQALEIVDSLVRSNAVDLIVVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTANV 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR G++K+ D + GN+T
Sbjct: 182 KNANCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGAVKNGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF IMY +GI+   E+IDLGVK  +VDKSGAW+++KG ++GQG+
Sbjct: 242 RVKVVKNKVAPPFKQAEFQIMYNQGINRQAEIIDLGVKLGLVDKSGAWYAYKGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338
            N+ ++L+EN E+++ +E  +R    +V
Sbjct: 302 ANACVYLQENPEVSKELEKQIRDQLLVV 329


>gi|271501701|ref|YP_003334727.1| recA protein [Dickeya dadantii Ech586]
 gi|270345256|gb|ACZ78021.1| recA protein [Dickeya dadantii Ech586]
          Length = 360

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 210/323 (65%), Positives = 271/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG+GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGVGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ + + G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGEEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+ FGEL+DLGVK+ +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINTFGELVDLGVKSKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  FL+EN  I+  ++  LR+
Sbjct: 304 ANACNFLKENPAISAELDKKLRE 326


>gi|317132915|ref|YP_004092229.1| recA protein [Ethanoligenens harbinense YUAN-3]
 gi|315470894|gb|ADU27498.1| recA protein [Ethanoligenens harbinense YUAN-3]
          Length = 400

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 206/354 (58%), Positives = 267/354 (75%), Gaps = 12/354 (3%)

Query: 1   MDYRKEMNIV-------DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSL 53
           MD RK            DK KAL  AL+ I++ +GKGA+M+LG   ++   +  +S+GS+
Sbjct: 1   MDSRKRTAAAVPANTADDKQKALATALANIEKQFGKGAVMRLGQNAAM--NVASISTGSV 58

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
            LD+ALGIGG P+GRIVEIYGPESSGKTT+ALH IAQ+QK GG+ AF+DAEHALD +YA+
Sbjct: 59  SLDLALGIGGVPRGRIVEIYGPESSGKTTVALHIIAQAQKAGGSAAFIDAEHALDPVYAK 118

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
            LGVD+  LL+SQPD GEQALEI + LVRSGA+D++V+DSVAAL PRAEIEGDMG+S  G
Sbjct: 119 ALGVDVDALLVSQPDNGEQALEIAEALVRSGAIDVLVVDSVAALVPRAEIEGDMGDSHVG 178

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
           +QARLMSQALRKL  ++S+  C  VFINQ+R K+GV++G+PE TTGG ALKFYSSVR+D+
Sbjct: 179 LQARLMSQALRKLAGALSKFNCAAVFINQLREKVGVVYGNPEVTTGGRALKFYSSVRMDV 238

Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVD 293
           R+  +IK+ D + G +T+VK+VKNK+A PFK  EFDIMYG GIS  GE++DL V+  I+ 
Sbjct: 239 RKKEAIKNGDEVIGTRTKVKIVKNKVAPPFKVAEFDIMYGTGISHEGEILDLAVEKDIIH 298

Query: 294 KSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           KSG+WFS++ +RLGQGR+N K  L E+  +AE IE  +R       +   +EP 
Sbjct: 299 KSGSWFSYQDRRLGQGRDNVKKLLEEDPALAEEIEKQVRAA---GKEEPAEEPV 349


>gi|94967289|ref|YP_589337.1| recA protein [Candidatus Koribacter versatilis Ellin345]
 gi|94549339|gb|ABF39263.1| recA protein [Candidatus Koribacter versatilis Ellin345]
          Length = 361

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 210/331 (63%), Positives = 283/331 (85%), Gaps = 1/331 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            ++ ++LE ALSQI++ +GKG+IM+LG++G+I   I V+S+G++  D ALG GGFP+GR+
Sbjct: 6   TERGRSLELALSQIEKQFGKGSIMKLGAKGAIV-PISVISTGAISFDAALGTGGFPRGRV 64

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEI+GPESSGKTT+AL  IA++QK GG  AFVDAEHALD  YARKLGVD++NLL+SQPD 
Sbjct: 65  VEIFGPESSGKTTIALQVIAEAQKAGGMAAFVDAEHALDPTYARKLGVDVENLLVSQPDY 124

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEIT+ LV S A+DI+V+DSVAAL P+AE++G+MG+S  G+QARLMSQALRKLT +
Sbjct: 125 GEQALEITEALVSSKAIDILVVDSVAALVPKAELDGEMGDSHMGLQARLMSQALRKLTGT 184

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +S+S   L+FINQ+R KIGVMFG+PETTTGG ALKFYSSVR+DIRR+ +IKD D++ G++
Sbjct: 185 VSKSGTCLIFINQIREKIGVMFGNPETTTGGRALKFYSSVRVDIRRIAAIKDGDTVIGSR 244

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           T+VKVVKNK A+PF++ EFDI+YGEGIS  G+++DL V+A+IV+KSG+WFS+K +R+GQG
Sbjct: 245 TKVKVVKNKTAAPFREAEFDIVYGEGISKEGDMLDLAVEANIVEKSGSWFSYKTERIGQG 304

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           REN+K FL++N +IA  +E+ +R++ GLV +
Sbjct: 305 RENAKQFLKDNKDIAARVEAEVRKHVGLVKE 335


>gi|296837391|gb|ADH59554.1| DNA recombinase [Burkholderia arboris]
          Length = 319

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 221/317 (69%), Positives = 276/317 (87%), Gaps = 1/317 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 2   IEKQFGKGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 60

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 61  LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 120

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 121 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 180

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 181 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 240

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 241 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 300

Query: 323 IAENIESLLRQNAGLVA 339
           IA  IE+ +R++ G+V+
Sbjct: 301 IAREIENRIRESLGVVS 317


>gi|152977946|ref|YP_001343575.1| recombinase A [Actinobacillus succinogenes 130Z]
 gi|150839669|gb|ABR73640.1| recA protein [Actinobacillus succinogenes 130Z]
          Length = 367

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 226/361 (62%), Positives = 285/361 (78%), Gaps = 2/361 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           + + + +  +KSKAL AAL QI++ +GKGAIM+LG +  +   +E VS+GS+GLD+ALGI
Sbjct: 5   NDKTKPSAEEKSKALAAALGQIEKQFGKGAIMKLGDRPDM--DVESVSTGSIGLDVALGI 62

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEI+GPESSGKTTL L  IAQ+QK G  CAF+DAEHALD IYA KLGVD+K 
Sbjct: 63  GGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKAGKVCAFIDAEHALDPIYAAKLGVDVKE 122

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L ISQPD GEQALEI D LVRSGA+D+I++DSVAALTP+AEIEGDMG++  G+QARLMSQ
Sbjct: 123 LFISQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIEGDMGDAHVGLQARLMSQ 182

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT+ I  S C++VFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GS+K 
Sbjct: 183 ALRKLTAQIKSSNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSVKA 242

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            D I GN+TRVKVVKNK+A+PF+ V+F IMYGEGIS  GELI+LGVK  +V KSGAWF++
Sbjct: 243 GDEIIGNETRVKVVKNKLAAPFRTVDFQIMYGEGISKNGELIELGVKQKLVQKSGAWFAY 302

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           +GQ++GQG+ N+  +L +N E A  +ES +R       +  L      +  + + DD+++
Sbjct: 303 EGQKIGQGKANAMKWLADNPEKAAELESKIRAEFQENPEKTLIAELDGSGKNTELDDSED 362

Query: 362 V 362
            
Sbjct: 363 T 363


>gi|296112538|ref|YP_003626476.1| recombination protein RecA [Moraxella catarrhalis RH4]
 gi|295920232|gb|ADG60583.1| recombination protein RecA [Moraxella catarrhalis RH4]
 gi|326561307|gb|EGE11665.1| recombinase A [Moraxella catarrhalis 7169]
 gi|326562548|gb|EGE12863.1| recombinase A [Moraxella catarrhalis 46P47B1]
 gi|326566176|gb|EGE16330.1| recombinase A [Moraxella catarrhalis BC1]
 gi|326569092|gb|EGE19155.1| recombinase A [Moraxella catarrhalis BC8]
 gi|326571693|gb|EGE21708.1| recombinase A [Moraxella catarrhalis BC7]
 gi|326576322|gb|EGE26232.1| recombinase A [Moraxella catarrhalis CO72]
          Length = 349

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 223/351 (63%), Positives = 282/351 (80%), Gaps = 6/351 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AAL+QI++ +GK  IM LG + +    ++VVS+GSLGLDIALGIGG PKGRI+
Sbjct: 4   NKEKALKAALAQIEKQFGKNTIMHLGDETAKL-DVDVVSTGSLGLDIALGIGGLPKGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L TIA+ QK GGTCAF+DAEHALD IYA+KLGV++ +LL+SQPD G
Sbjct: 63  EIFGPESSGKTTLTLQTIAECQKQGGTCAFIDAEHALDPIYAKKLGVNIDDLLVSQPDNG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T + 
Sbjct: 123 EQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNA 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+KD D I G++T
Sbjct: 183 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDGDEIIGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV+KNKMA PF+Q EF IMYGEGI+  GE+IDLGV    V KSGAW+S+   ++GQG+
Sbjct: 243 RVKVIKNKMAPPFRQTEFQIMYGEGINRLGEVIDLGVDIGAVGKSGAWYSYGDGKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
            N+  +L+EN  IA  IE+ +R++           P + + +  +  + DN
Sbjct: 303 ANTVKYLQENPAIASEIEAKVRES-----KLATVTPIVESDEPEEHLEDDN 348


>gi|153814514|ref|ZP_01967182.1| hypothetical protein RUMTOR_00728 [Ruminococcus torques ATCC 27756]
 gi|317500555|ref|ZP_07958777.1| hypothetical protein HMPREF1026_00720 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089345|ref|ZP_08338245.1| recA [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145848008|gb|EDK24926.1| hypothetical protein RUMTOR_00728 [Ruminococcus torques ATCC 27756]
 gi|316898065|gb|EFV20114.1| hypothetical protein HMPREF1026_00720 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330405408|gb|EGG84943.1| recA [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 363

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 199/354 (56%), Positives = 274/354 (77%), Gaps = 1/354 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +K KAL+AA++++++ +GKGA+M+LG  G+    +E V +G L LDIALG+GG PKGR
Sbjct: 4   NDEKKKALDAAIAKLEKDFGKGAVMKLGESGA-HVAVETVPTGCLSLDIALGLGGVPKGR 62

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++E+YGPESSGKTT+ALH IA+ QK GG   F+DAEHALD +YA+ +GVD+  L ISQPD
Sbjct: 63  VIEVYGPESSGKTTVALHMIAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDELYISQPD 122

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           +G+QALEI + + RSGA+DIIV+DSVAAL PR EIEGDMG+S  G+QARLMSQALRKLT 
Sbjct: 123 SGDQALEIAETMARSGAIDIIVVDSVAALVPRQEIEGDMGDSHVGLQARLMSQALRKLTP 182

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            IS+S CI++FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+D+R+  ++K    + GN
Sbjct: 183 VISKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYASVRMDVRKTETLKQSGEMVGN 242

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
            TR+K+VKNK+A PFK+ EFDIM+G+GIS  G+++DL  K  +V KSGAW++++G ++GQ
Sbjct: 243 HTRIKIVKNKIAPPFKEAEFDIMFGKGISKEGDILDLATKLDLVKKSGAWYAYEGDKIGQ 302

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           GREN+K +L  + EI E +E  +R++  L  DS  ++     K+   K  +D++
Sbjct: 303 GRENAKTYLSAHPEIMEELEKKVREHYQLGTDSSEKDEKEVKKEKEQKGKSDDL 356


>gi|225021200|ref|ZP_03710392.1| hypothetical protein CORMATOL_01212 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305680852|ref|ZP_07403659.1| protein RecA [Corynebacterium matruchotii ATCC 14266]
 gi|224945933|gb|EEG27142.1| hypothetical protein CORMATOL_01212 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305659057|gb|EFM48557.1| protein RecA [Corynebacterium matruchotii ATCC 14266]
          Length = 374

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 204/360 (56%), Positives = 268/360 (74%), Gaps = 7/360 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+ KAL+ AL QI++ +GKGA+M+LG        I  +SSG+  +D+ALGIGGFP+GR
Sbjct: 14  VNDRQKALDTALEQIEKDFGKGAVMRLGDDNR--PPISAISSGNTAIDVALGIGGFPRGR 71

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEIYGPESSGKTT+ALH IA +Q+ GG  AF+DAEHALD  YARKLGVD   LL+SQPD
Sbjct: 72  IVEIYGPESSGKTTVALHAIASAQREGGIAAFIDAEHALDPEYARKLGVDTDALLVSQPD 131

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GEQALEI DML+RSGA+D+IV+DSVAALTP+AEIEGDMG+S  G+QARLMSQALRK+T 
Sbjct: 132 HGEQALEIADMLIRSGAIDLIVVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKMTG 191

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           ++  S    +FINQ+R KIGVMFGSPETTTGG ALKFY++VR D+RR  ++KD     GN
Sbjct: 192 ALHNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYATVRCDVRRTQTLKDGQDAIGN 251

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK++ PFK  EFDI+YGEGIS    LID+GV   I+ KSG+WF+++G +LGQ
Sbjct: 252 RTKLKVVKNKVSPPFKIAEFDIVYGEGISRESTLIDMGVDNGIIKKSGSWFTYEGDQLGQ 311

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGL-----VADSLLQEPAINTKDDADKDDTDNVE 363
           G+E  ++ L+   E+A+ IE  + +   +     + D      ++++  D D DD  + +
Sbjct: 312 GKEKVRMLLKNTPELADEIEEKILKKLKVGKYANLPDEETTNDSVDSVPDVDFDDNADEQ 371


>gi|92112756|ref|YP_572684.1| recA protein [Chromohalobacter salexigens DSM 3043]
 gi|123084204|sp|Q1QZX3|RECA_CHRSD RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|91795846|gb|ABE57985.1| RecA protein [Chromohalobacter salexigens DSM 3043]
          Length = 352

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 217/349 (62%), Positives = 275/349 (78%), Gaps = 4/349 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++SKAL AALSQI+R +GKGA+M+LG    +      +S+GSLGLDIALG+GG P GR+V
Sbjct: 6   NRSKALNAALSQIERQFGKGAVMRLGDTPRV--ATPAISTGSLGLDIALGVGGLPMGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTT+ L  IAQ QK G TCAF+DAEHALD  YA KLGV+L +LL+SQPDTG
Sbjct: 64  EIFGPESSGKTTMTLSVIAQGQKQGKTCAFIDAEHALDPTYAEKLGVNLDDLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG VD+IV+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T +I
Sbjct: 124 EQALEICDMLVRSGGVDVIVVDSVAALTPRAEIEGEMGDSHVGLQARLMSQALRKVTGNI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++F+NQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR GS+K  D   GN+T
Sbjct: 184 KNANCMVMFVNQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKQGDEAIGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE++D+GV+  +VDK+GAW+S++G ++GQG+
Sbjct: 244 RVKVVKNKVAPPFRQAEFQILYGKGIYHAGEVVDIGVQQGLVDKAGAWYSYQGNKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
            N+  FL +N  I E IE+ +R    L++    +  +      A  DD+
Sbjct: 304 ANAAQFLEDNPAIMEEIENEIRAR--LLSTPKPEAESQEKAAAAQDDDS 350


>gi|78221422|ref|YP_383169.1| recombinase A [Geobacter metallireducens GS-15]
 gi|123770376|sp|Q39Z80|RECA_GEOMG RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|78192677|gb|ABB30444.1| RecA DNA recombination protein [Geobacter metallireducens GS-15]
          Length = 339

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 217/339 (64%), Positives = 274/339 (80%), Gaps = 1/339 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             ++ KA+E ALSQI++ +GKGAIM+LG+       I+ + +G+L LDIALG+GG P+GR
Sbjct: 2   TQEREKAIELALSQIEKQFGKGAIMRLGAD-EALPDIDAIPTGALSLDIALGVGGVPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EIYGPESSGKTTLALH  A++QK GG  AFVDAEHALD  YARKLGV   +LL+SQPD
Sbjct: 61  VIEIYGPESSGKTTLALHIAAEAQKLGGIAAFVDAEHALDIGYARKLGVRTDDLLVSQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI +MLVRSGAVD++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT 
Sbjct: 121 TGEQALEIAEMLVRSGAVDVLVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            IS+S C ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIR++ ++K  D++ G+
Sbjct: 181 IISKSNCCVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRKIATLKQGDAVIGS 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T+VKVVKNK+A PF++VEFDI YGEGIS  G+L+DL V   I+DKSGAWFS+   R+GQ
Sbjct: 241 RTKVKVVKNKVAPPFREVEFDIYYGEGISRLGDLLDLAVDRKIIDKSGAWFSYGSDRIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           GRENS+ FL+E+ E+   IE  + + AG+      +E A
Sbjct: 301 GRENSRNFLKEHPEMVAEIEDKIYETAGIPRKGGKEEAA 339


>gi|296837381|gb|ADH59549.1| DNA recombinase [Burkholderia contaminans]
          Length = 318

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 221/317 (69%), Positives = 275/317 (86%), Gaps = 1/317 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESLLRQNAGLVA 339
           IA  IE+ +R++ G+V 
Sbjct: 300 IAREIENRIRESLGVVT 316


>gi|70904866|gb|AAZ14012.1| RecA [Burkholderia multivorans]
          Length = 318

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 221/317 (69%), Positives = 276/317 (87%), Gaps = 1/317 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESLLRQNAGLVA 339
           IA  IE+ +R++ G+ A
Sbjct: 300 IAREIENRIRESLGVAA 316


>gi|270342004|gb|ACZ74644.1| RecA [Burkholderia cepacia]
          Length = 347

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 230/350 (65%), Positives = 293/350 (83%), Gaps = 3/350 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 120 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 180 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 240 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLRE+ EIA  IE+ +R++ G+   S+      N  +  D+++
Sbjct: 300 GKDNAREFLRESPEIAREIENRIRESLGVA--SMPDGVVGNEAEAMDEEE 347


>gi|157326975|gb|ABV44600.1| RecA [Burkholderia multivorans]
          Length = 314

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 221/315 (70%), Positives = 275/315 (87%), Gaps = 1/315 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LV
Sbjct: 60  TLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FIN
Sbjct: 120 RSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ 
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN 
Sbjct: 240 PFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENP 299

Query: 322 EIAENIESLLRQNAG 336
           EIA  IE+ +R++ G
Sbjct: 300 EIAREIENRIRESLG 314


>gi|166031717|ref|ZP_02234546.1| hypothetical protein DORFOR_01417 [Dorea formicigenerans ATCC
           27755]
 gi|166028170|gb|EDR46927.1| hypothetical protein DORFOR_01417 [Dorea formicigenerans ATCC
           27755]
          Length = 363

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 201/352 (57%), Positives = 273/352 (77%), Gaps = 3/352 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  DK KAL+AA++++++ +GKG +M+LG   +    +E + +GSL LDIALG+GG P+G
Sbjct: 3   NNEDKKKALDAAIAKLEKDFGKGTVMKLGD-PAAQVSVETIPTGSLSLDIALGLGGVPRG 61

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R+VEIYGPESSGKTT+ALH I++ QK GG   F+DAEHALD +YAR +GVD+  L ISQP
Sbjct: 62  RVVEIYGPESSGKTTVALHMISEVQKRGGIAGFIDAEHALDPVYARNIGVDIDELYISQP 121

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D+G+QALEI + + RSGA+DIIVIDSVAAL P+ EIEGDMG+S  G+QARLMSQALRKLT
Sbjct: 122 DSGDQALEIAETMARSGAMDIIVIDSVAALVPKQEIEGDMGDSHVGLQARLMSQALRKLT 181

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
             IS+S C+++FINQ+R K+G+MFG+PETTTGG ALKFY+SVR+D+RR+ ++K    + G
Sbjct: 182 PVISKSNCVVIFINQLREKVGIMFGNPETTTGGRALKFYASVRMDVRRIETLKQGGEMIG 241

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+TRVK+VKNK+A PFK+ EFDIM+G+GIS  G+++DL V   +V+KSGAWFS  G ++G
Sbjct: 242 NRTRVKIVKNKIAPPFKEAEFDIMFGKGISKEGDILDLAVNLGLVNKSGAWFSCNGDKIG 301

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           QGREN+KI+L E+ E+ E+++  +R +     D    E A   +  + K D+
Sbjct: 302 QGRENAKIYLTEHPELMESLDKQIRAHYN--FDGSASEEADTKEGKSSKADS 351


>gi|330504207|ref|YP_004381076.1| recombinase A [Pseudomonas mendocina NK-01]
 gi|328918493|gb|AEB59324.1| recombinase A [Pseudomonas mendocina NK-01]
          Length = 347

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 216/350 (61%), Positives = 277/350 (79%), Gaps = 7/350 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI++ +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKRALAAALGQIEKQFGKGAVMRMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAEAQKLGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS A+D+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAIDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR G++K+ + + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGAVKEGEEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PF+Q EF I+YG+GI   GE+IDLGV+  +V+KSGAW+S++G ++GQG+
Sbjct: 242 RVKIVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVQQGLVEKSGAWYSYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
            N+  FL +N E+A  IE  +RQ        +   PA  + DD    + D
Sbjct: 302 ANAAKFLEDNQEVAREIEGQIRQKL-----LVNSTPAKASADDLADAEVD 346


>gi|291288669|ref|YP_003505485.1| recA protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290885829|gb|ADD69529.1| recA protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 342

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 210/341 (61%), Positives = 271/341 (79%), Gaps = 2/341 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+AA+ +I++ +GKGA+M+LG +    E + V+ SG L LDIALG+GGFP+GRI+
Sbjct: 4   DKQKALDAAMGKIEKDFGKGAVMRLGDKP--VEKLPVIPSGILSLDIALGVGGFPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYG ESSGKTT+ALH IA++QK GG  AFVDAEHALD IYA+ +GVD  NL++SQPD+G
Sbjct: 62  EIYGAESSGKTTIALHAIAEAQKLGGAAAFVDAEHALDPIYAKAIGVDTDNLIVSQPDSG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEIT+ LVRSGA+DIIV+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRKLTS +
Sbjct: 122 EVALEITETLVRSGAIDIIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKLTSIV 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK  LVFINQ R KIGV++G+PETTTGGNALKFY+S+RL+I++  ++K+K+ + GN  
Sbjct: 182 NKSKTTLVFINQTRSKIGVVYGNPETTTGGNALKFYASMRLEIKKTQALKEKEEVVGNHG 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
             KVVKNK+A PFK  EFDI+YG G+S  G LID+GV A  V+K+GAWFS+   +LGQG+
Sbjct: 242 LAKVVKNKVAPPFKTAEFDILYGVGVSREGLLIDMGVDAGFVNKAGAWFSYNDAKLGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           ENS+ +L+EN EIA+ IE  +R   G++   +L       K
Sbjct: 302 ENSRTYLKENPEIAQEIEDKIRTKLGMIEPIILPPEDEKKK 342


>gi|47678160|emb|CAF21843.1| RecA recombinase [Enterococcus villorum]
          Length = 346

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 200/340 (58%), Positives = 266/340 (78%), Gaps = 2/340 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ YGKG+IM+LG +  I + +  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKAALDAALKKIEKNYGKGSIMKLGEK--IDQQVSTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+V+DSVAAL PRAEI+G+MG+S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E D+MYG+GIS  GEL+D+ V+  IVDKSGAW+S+K  R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKIAEVDVMYGQGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           EN+KI++  + E+   I +L+R   G+  +  + E     
Sbjct: 302 ENAKIYMANHPEMMAEISALVRAAYGIGEEVEIPEETQEE 341


>gi|114320639|ref|YP_742322.1| recombinase A [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311688|sp|Q0A8K5|RECA_ALHEH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|114227033|gb|ABI56832.1| recA protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 347

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 223/344 (64%), Positives = 281/344 (81%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL AAL QI+R +GKGA+M++G   ++   +EV+S+GSL LDIALG+GG PKGR+V
Sbjct: 4   NRKKALGAALGQIERQFGKGAVMRMGDARAVRGDVEVISTGSLQLDIALGVGGLPKGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA++QK GGT AFVDAEHALD  YA KLGV+L +LL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLHAIAEAQKAGGTAAFVDAEHALDPDYAEKLGVNLDDLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSGAVD++V+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 124 EQALEITDMLVRSGAVDVVVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVR+DIRR+G+IK  D + GN+T
Sbjct: 184 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRMDIRRLGAIKKGDEVLGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFKQ EF+I+YG+GIS  GELIDLGVK  +++K+GAW+S  G R+GQG+
Sbjct: 244 RVKVVKNKMAPPFKQAEFEILYGQGISHEGELIDLGVKEGLIEKAGAWYSHNGDRIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           +N + +L+E+ E+A  +E  +R           +     +  +A
Sbjct: 304 DNVRNYLKEHPELAAELEKQIRDKLLPGRAPSSEAQGTESGQEA 347


>gi|330984348|gb|EGH82451.1| recombinase A [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 468

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 215/342 (62%), Positives = 279/342 (81%), Gaps = 4/342 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+   K  AL  AL+QI++ +GKGA+M++G Q  +   I  +S+GSL LDIALGIGG PK
Sbjct: 1   MSTDQKKAALATALTQIEKQFGKGAVMRMGDQERM--AIPAISTGSLNLDIALGIGGLPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD  YA KLGV++ +LL++Q
Sbjct: 59  GRIVEIYGPESSGKTTLTLSVIAEAQKNGATCAFVDAEHALDPEYAAKLGVNVDDLLVAQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEITDMLVRSG+VD++++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+
Sbjct: 119 PDTGEQALEITDMLVRSGSVDVLIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T +I  + C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR G++KD D+I 
Sbjct: 179 TGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGAVKDGDNIV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G++TRVKVVKNK+A PF+Q EF I+YGEGI  FGEL+DLGV   ++DKSGAW+++ G ++
Sbjct: 239 GSETRVKVVKNKVAPPFRQAEFQILYGEGIGKFGELVDLGVADGLIDKSGAWYAYGGNKI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348
           GQG+ N+  +L EN  +A+ +E+L+R     +A+ +++ P +
Sbjct: 299 GQGKANTIKYLAENPAVAQELEALIRNKH--LANRVIEPPRV 338


>gi|296837389|gb|ADH59553.1| DNA recombinase [Burkholderia contaminans]
          Length = 316

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 221/317 (69%), Positives = 275/317 (86%), Gaps = 1/317 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESLLRQNAGLVA 339
           IA  IE+ +R++ G+V 
Sbjct: 300 IAREIENRIRESLGVVT 316


>gi|15893105|ref|NP_360819.1| recombinase A [Rickettsia conorii str. Malish 7]
 gi|15620311|gb|AAL03720.1| RecA protein [Rickettsia conorii str. Malish 7]
          Length = 362

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 223/345 (64%), Positives = 284/345 (82%), Gaps = 2/345 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K M+  DK +A+ AAL+QI++ YGKG++M+LG +  +   IE VS+GSLGLDIALGIGG 
Sbjct: 18  KFMSNTDKERAIAAALAQIEKSYGKGSVMKLGQRPHV--DIEAVSTGSLGLDIALGIGGV 75

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA+KLGV++  L+I
Sbjct: 76  PKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELII 135

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D L+RS  +D+I+IDSVAAL P++EIEG+MG++    QARLMSQALR
Sbjct: 136 SQPDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALR 195

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ 
Sbjct: 196 KLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEE 255

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + G+QT+VKVVKNK++ PFK  +FDIMYG GIS  GE+IDLGVK  IV+KSG+WFS+K  
Sbjct: 256 VIGSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYKNV 315

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
           R+GQGREN K +L+E+ +I+  IE ++R+ +  + +  L +    
Sbjct: 316 RIGQGRENVKQYLKEHPQISNEIEKIIREKSSKITNINLDQTEEE 360


>gi|296185335|ref|ZP_06853745.1| protein RecA [Clostridium carboxidivorans P7]
 gi|296050169|gb|EFG89593.1| protein RecA [Clostridium carboxidivorans P7]
          Length = 358

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 218/354 (61%), Positives = 279/354 (78%), Gaps = 2/354 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +K KALEAAL QI++ +GKG+IM+LG   ++   IE +S+G L LDIALGIGG P+GR
Sbjct: 5   NGEKLKALEAALGQIEKQFGKGSIMKLGEHSTL--DIEAISTGCLDLDIALGIGGVPRGR 62

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTT+ALH +A++QK  G  AF+DAEHALD +YAR LGVD++NL++SQPD
Sbjct: 63  VVEIYGPESSGKTTVALHIVAEAQKAAGAAAFIDAEHALDPVYARALGVDIENLIVSQPD 122

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVD+IV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT 
Sbjct: 123 TGEQALEIAEALVRSGAVDVIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTG 182

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SKC+++FINQ+R K+GVMFG+PETT GG ALKFY+SVR+DIRR+ SIK  DSI GN
Sbjct: 183 AINKSKCVIIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDIRRIDSIKQGDSIVGN 242

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKV KNK+A PFKQ EFDIMY +GIS  G ++D+GV+  +V KSGAWF++K  RLGQ
Sbjct: 243 RTRVKVTKNKVAPPFKQAEFDIMYNQGISREGNVLDVGVREELVQKSGAWFAYKENRLGQ 302

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           GREN+K FL+EN  I   IE+ +R+   L         A    ++  K + ++ 
Sbjct: 303 GRENAKQFLKENSSILYEIENKIREKYELPIMKPSANKAETKNENKSKQEANSE 356


>gi|157829017|ref|YP_001495259.1| recombinase A [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933742|ref|YP_001650531.1| recombinase A [Rickettsia rickettsii str. Iowa]
 gi|157801498|gb|ABV76751.1| recombinase A [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908829|gb|ABY73125.1| RecA [Rickettsia rickettsii str. Iowa]
          Length = 362

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 224/345 (64%), Positives = 284/345 (82%), Gaps = 2/345 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K M+  DK +A+ AAL+QI++ YGKG++M+LG +  +   IE VS+GSLGLDIALGIGG 
Sbjct: 18  KFMSNTDKERAIAAALAQIEKSYGKGSVMKLGQRPHV--DIEAVSTGSLGLDIALGIGGV 75

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA+KLGV++  L+I
Sbjct: 76  PKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELII 135

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D L+RS  +D+I+IDSVAAL P++EIEG+MG++    QARLMSQALR
Sbjct: 136 SQPDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALR 195

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ 
Sbjct: 196 KLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEE 255

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + G+QT+VKVVKNK+A PFK  +FDIMYG GIS  GE+IDLGVK  IV+KSG+WFS+K  
Sbjct: 256 VIGSQTKVKVVKNKVAPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYKNV 315

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
           R+GQGREN K +L+E+ +I+  IE ++R+ +  + +  L +    
Sbjct: 316 RIGQGRENVKQYLKEHPQISNEIEKIIREKSSKITNINLDQTEEE 360


>gi|296837393|gb|ADH59555.1| DNA recombinase [Burkholderia arboris]
          Length = 315

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 221/316 (69%), Positives = 275/316 (87%), Gaps = 1/316 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESLLRQNAGLV 338
           IA  IE+ +R++ G+V
Sbjct: 300 IAREIENRIRESLGVV 315


>gi|37359206|gb|AAN73889.1| DNA recombinase A [primary endosymbiont of Sitophilus oryzae]
          Length = 355

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 208/331 (62%), Positives = 268/331 (80%), Gaps = 2/331 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GK +IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKCSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S   + AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMRLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GS+K+ D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKEGDVVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+  GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQIMYGEGINIRGELVDLGVKHKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341
            N+  FL+++ E+A  ++  LR      AD 
Sbjct: 304 ANACTFLKDHPELAAELDKKLRDMLLHSADG 334


>gi|170718447|ref|YP_001783664.1| recombinase A [Haemophilus somnus 2336]
 gi|189039596|sp|B0UWL1|RECA_HAES2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|168826576|gb|ACA31947.1| recA protein [Haemophilus somnus 2336]
          Length = 355

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 228/352 (64%), Positives = 280/352 (79%), Gaps = 9/352 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K+KALEAAL QI++ +GKGAIM+LG    +   IE +S+GSL LD+ALGIGG P GRIV
Sbjct: 6   EKAKALEAALGQIEKQFGKGAIMKLGETQKL--DIEAISTGSLSLDVALGIGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IAQ+QK G TCAF+DAEHALD IYA KLGVD+K LLISQPD G
Sbjct: 64  EIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAEHALDPIYAAKLGVDVKELLISQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVD++++DSVAALTP+AEIEG+MG++  G+QARLMSQALRKLT  I
Sbjct: 124 EQALEICDALVRSGAVDVVIVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLTGQI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S C++VFINQ+RMKIGV+FG+PETTTGGNALKFY+SVRLDIRRVGSIK+ D + GN+T
Sbjct: 184 KNSNCLVVFINQIRMKIGVVFGNPETTTGGNALKFYASVRLDIRRVGSIKNGDEVIGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+QV+F I+YGEGIS  GELI+LGVK  +V+KSGAWFS++G+++GQG+
Sbjct: 244 RVKVVKNKVAPPFRQVDFQILYGEGISRNGELIELGVKHKLVNKSGAWFSYEGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
            N+  +L E+ E A  +E  LR         LL  P      D + +   N+
Sbjct: 304 TNAMKWLAEHPEQAAILEQKLR-------SELLANPEKALLADLEAESESNI 348


>gi|90412107|ref|ZP_01220114.1| recombinase A [Photobacterium profundum 3TCK]
 gi|90327085|gb|EAS43464.1| recombinase A [Photobacterium profundum 3TCK]
          Length = 353

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 223/352 (63%), Positives = 276/352 (78%), Gaps = 3/352 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIV
Sbjct: 4   NKQKALAAALGQIEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L TIA +Q+   TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLETIAAAQRVNKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IVIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEICDALARSGAVDLIVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+T
Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +V+K+GAW+S+KG ++GQG+
Sbjct: 242 RIKVVKNKIAAPFKQAETQILYGQGFNRNGELIDLGVKHKLVEKAGAWYSYKGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
            NS   L EN  IAE IE LLR    L       E     K  + KD+ + +
Sbjct: 302 ANSCKHLVENPAIAEEIEKLLRDML-LSPAVEEVEETDAKKSGSKKDEAEAL 352


>gi|51246810|ref|YP_066694.1| RecA protein [Desulfotalea psychrophila LSv54]
 gi|59798230|sp|Q6AIZ3|RECA_DESPS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|50877847|emb|CAG37687.1| probable RecA protein [Desulfotalea psychrophila LSv54]
          Length = 355

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 216/346 (62%), Positives = 270/346 (78%), Gaps = 2/346 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK+ ++E A+SQIQ+ +GKG+IM+LG Q    E I V+S+G+L LDIALG+GG PKGR+ 
Sbjct: 8   DKAGSVENAISQIQKQFGKGSIMRLGEQA--LEAIPVISTGALSLDIALGVGGLPKGRMT 65

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH +A++QK GG  AF+DAEHALD+ YA KLGV++ NLL+SQPD G
Sbjct: 66  EIYGPESSGKTTLALHVVAEAQKLGGIAAFIDAEHALDTAYAEKLGVNIDNLLVSQPDFG 125

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI ++L+RSG VDIIV+DSVAALTP+AEI+G++G+   G+QARLMSQA+RK    +
Sbjct: 126 EQALEIAEILIRSGGVDIIVVDSVAALTPKAEIDGNVGDVHVGLQARLMSQAMRKFAGVL 185

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +RS  +L+FINQ+RMKIGVMFGSPETTTGGNALKFY S RLDIRR+G+IKD   ITGN+T
Sbjct: 186 NRSNTVLIFINQIRMKIGVMFGSPETTTGGNALKFYCSERLDIRRIGAIKDGQEITGNRT 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK  EFDI+YGEGIS  G++ DL V   I+DKSG+W+S+K +R+GQGR
Sbjct: 246 RVKVVKNKVAPPFKIAEFDIIYGEGISKIGDMFDLAVGLDIIDKSGSWYSYKNERIGQGR 305

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           ENSK FL +   I   IE  +R   GL      +        D +K
Sbjct: 306 ENSKQFLMDTPAICHEIEEKVRSAYGLPDREETKREETAQIPDTEK 351


>gi|327480125|gb|AEA83435.1| recombinase A [Pseudomonas stutzeri DSM 4166]
          Length = 348

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 217/347 (62%), Positives = 277/347 (79%), Gaps = 3/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI++ +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKRALAAALGQIEKQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAEAQKMGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE+IDLGV+  +V+KSGAW+++KG ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVQQGLVEKSGAWYAYKGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
            N+  FL +N EI   IE  +R    LV      +  + ++D  D D
Sbjct: 302 ANAAKFLEDNPEIGREIEQQIRDKL-LVVSGGSSKANVVSEDLVDAD 347


>gi|157961023|ref|YP_001501057.1| recombinase A [Shewanella pealeana ATCC 700345]
 gi|189039609|sp|A8H1T5|RECA_SHEPA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|157846023|gb|ABV86522.1| recA protein [Shewanella pealeana ATCC 700345]
          Length = 355

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 214/351 (60%), Positives = 277/351 (78%), Gaps = 2/351 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL A L QI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P GRI
Sbjct: 5   PNKEKALNAVLGQIEKQFGKGSIMKLGEDRSM--DVETISTGSLALDVALGAGGLPMGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTL L  IA +QK G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDT
Sbjct: 63  VEIYGPESSGKTTLTLEVIAAAQKQGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  +
Sbjct: 123 GEQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           + +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD++ + GN+
Sbjct: 183 LKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDREEVIGNE 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A+PFKQ EF I+YG+GI+  GEL+DLGV+  +++K+GAW+S+KG ++GQG
Sbjct: 243 TRVKVVKNKIAAPFKQAEFQILYGQGINSTGELVDLGVQHKLIEKAGAWYSYKGDKIGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           R N+  +L EN  I++ IE+ LR       + +  + A    D+ D +  +
Sbjct: 303 RANAGKYLIENPAISDEIETTLRAMLLGNGEKVSADSADTAGDNIDLETGE 353


>gi|325265014|ref|ZP_08131741.1| protein RecA [Clostridium sp. D5]
 gi|324029704|gb|EGB90992.1| protein RecA [Clostridium sp. D5]
          Length = 370

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 196/329 (59%), Positives = 266/329 (80%), Gaps = 1/329 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             DK KALEAA++++++ +GKG +M+LG  G+    +E V +G L LD+ALG+GG PKGR
Sbjct: 5   NEDKKKALEAAIAKLEKDFGKGTVMKLGEPGA-HVAVETVPTGCLSLDLALGLGGVPKGR 63

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++E+YGPESSGKTT+ALH IA+ QK GG   FVDAEHALD +YA+ +GVD+  L ISQPD
Sbjct: 64  VIEVYGPESSGKTTVALHMIAEVQKRGGIAGFVDAEHALDPVYAKSIGVDIDELYISQPD 123

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           +G+QALEIT+ +VRSGA+DIIVIDSVAAL PR EIEGDMG+S  G+QARLMSQALRKLT 
Sbjct: 124 SGDQALEITETMVRSGAIDIIVIDSVAALVPRQEIEGDMGDSHVGLQARLMSQALRKLTP 183

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            IS+S C+++FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+D+RR+ ++K    + GN
Sbjct: 184 VISKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASVRMDVRRIETLKQSGEMVGN 243

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TR+K+VKNK+A PFK+ EFDIM+G+GIS  G+++DL     +V KSGAW++++G+++GQ
Sbjct: 244 RTRIKIVKNKIAPPFKEAEFDIMFGKGISKEGDILDLAAGIDVVKKSGAWYAYEGEKIGQ 303

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGL 337
           GREN+K +L E+ E+ E ++  +R +  L
Sbjct: 304 GRENAKAYLTEHPEVMEELDRKVRAHYKL 332


>gi|262372265|ref|ZP_06065544.1| recA protein [Acinetobacter junii SH205]
 gi|262312290|gb|EEY93375.1| recA protein [Acinetobacter junii SH205]
          Length = 348

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 217/342 (63%), Positives = 275/342 (80%), Gaps = 3/342 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL+AALSQI++ +GK  +M+LG      + +E VS+GSL LDIALGIGG PKGRI+
Sbjct: 4   NKSKALQAALSQIEKQFGKNTVMRLGDNT--VQAVEAVSTGSLTLDIALGIGGLPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ L  IAQ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD G
Sbjct: 62  EIYGPESSGKTTMTLQAIAQCQKNGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T + 
Sbjct: 122 EQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNA 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G +K+ D I G++T
Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNKMA PF++  F IMYG+G +  GEL+DL V+  IV K+GAW+S++G ++GQG+
Sbjct: 242 KVKVVKNKMAPPFREAVFQIMYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
            N   +  EN +IA  IE ++R+   L  ++    P  + ++
Sbjct: 302 NNVIRYFEENSKIAAEIEKVVREQL-LTKNNPEAAPTEDVEE 342


>gi|253997269|ref|YP_003049333.1| recombinase A [Methylotenera mobilis JLW8]
 gi|253983948|gb|ACT48806.1| recA protein [Methylotenera mobilis JLW8]
          Length = 342

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 226/334 (67%), Positives = 282/334 (84%), Gaps = 1/334 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K+KAL AALSQI++ +GKG+IM++G    I E I+ VS+GSLGLDIALGIGG P+GRI+
Sbjct: 4   NKAKALSAALSQIEKQFGKGSIMRMGD-SDIGEDIQAVSTGSLGLDIALGIGGLPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GG  AF+DAEHALD  YA KLGV++ +LLISQPDTG
Sbjct: 63  EIYGPESSGKTTLTLSVIAEMQKLGGVAAFIDAEHALDPQYAAKLGVNVPDLLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VDI+V+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRKLT +I
Sbjct: 123 EQALEIADMLVRSGSVDIVVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKLTGNI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK  D ITG++T
Sbjct: 183 KRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKKGDEITGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV+KNK+A PFKQ EFDIMYGEGIS FGE+I+LG    +++K+GAW+S+ G+++GQG+
Sbjct: 243 RVKVIKNKVAPPFKQAEFDIMYGEGISRFGEIIELGANIKLIEKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
           EN+K FLRE+ EIA  +E+ +R NA  + + +  
Sbjct: 303 ENAKEFLREHPEIAAELEAKIRANAKSLNEGMAA 336


>gi|293604305|ref|ZP_06686712.1| recombination protein A [Achromobacter piechaudii ATCC 43553]
 gi|292817182|gb|EFF76256.1| recombination protein A [Achromobacter piechaudii ATCC 43553]
          Length = 353

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 225/332 (67%), Positives = 279/332 (84%), Gaps = 1/332 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+ G    +   I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 23  QIEKQFGKGSIMRYGDN-EVSHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 81

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGTCAFVDAEHALD  YA KLGV+L +LLISQPDTGEQALEITD LV
Sbjct: 82  TLTLQVIAEMQKIGGTCAFVDAEHALDVQYANKLGVNLTDLLISQPDTGEQALEITDALV 141

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT++I R+ C+++FIN
Sbjct: 142 RSGSVDLIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFIN 201

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A 
Sbjct: 202 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKGDEVVGNETRVKVVKNKVAP 261

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PFKQ EFDIMYG GIS  GE+IDLGV A++VDKSGAW+S+ G R+GQG++N + +L+E+ 
Sbjct: 262 PFKQAEFDIMYGAGISREGEIIDLGVAANVVDKSGAWYSYNGNRIGQGKDNVREYLKEHR 321

Query: 322 EIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           ++A  IE+ +R+N G+V+ +    P      +
Sbjct: 322 DMAIEIENRVRENQGIVSRAAEFVPTAEDTAE 353


>gi|149374513|ref|ZP_01892287.1| recA protein [Marinobacter algicola DG893]
 gi|149361216|gb|EDM49666.1| recA protein [Marinobacter algicola DG893]
          Length = 350

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 221/325 (68%), Positives = 271/325 (83%), Gaps = 2/325 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL AALSQI+R +GKGA+M++G Q    E I  VS+GSLGLD+ALGIGG P GRI 
Sbjct: 4   NRKKALGAALSQIERQFGKGAVMKMGDQPR--EAIPAVSTGSLGLDVALGIGGLPYGRIC 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD +YA KLGV++  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAEAQKAGKTCAFVDAEHALDPVYAEKLGVNVDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI+DMLVRS AVD+I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT ++
Sbjct: 122 EQALEISDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNV 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+L+FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++KD D + GN+T
Sbjct: 182 KHANCLLIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKDGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EF IMYG+GI    E++D+GVK   VDKSGAW+++KG ++GQG+
Sbjct: 242 RVKVVKNKVSPPFKQAEFQIMYGKGIYHMAEVLDMGVKEGFVDKSGAWYAYKGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
            N+  FL EN+EIA  IE+ +R   
Sbjct: 302 ANACKFLEENLEIANEIEAAVRDKL 326


>gi|297617235|ref|YP_003702394.1| recA protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297145072|gb|ADI01829.1| recA protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 340

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 196/326 (60%), Positives = 267/326 (81%), Gaps = 2/326 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ +ALE+A+ +I++ +G+G+IM+LG   ++   + VV +G L LD+ALG+GG P+GR+
Sbjct: 5   SDRLEALESAIRKIEKDFGRGSIMKLGEAAAM--NVAVVPTGCLSLDMALGVGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEI+GPESSGKTT+ALH IA++QK GG  AF+D EHALD +YA++LGV++ +LL+SQPDT
Sbjct: 63  VEIFGPESSGKTTVALHVIAEAQKDGGIAAFIDVEHALDPLYAKRLGVNINDLLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + LVRSGAVD++V+DSVAAL P+AE+EG+MG+   G+QARLMSQALRKLT +
Sbjct: 123 GEQALEIAEALVRSGAVDVLVVDSVAALVPKAELEGEMGDIHVGLQARLMSQALRKLTGT 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S+   +FINQ+R K+GV++G+PETT GG ALKFY+SVRL++R+V +IK      G++
Sbjct: 183 ISKSRTCAIFINQIREKVGVVYGNPETTPGGRALKFYASVRLEVRKVDNIKQGTETVGSR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQ EFDIMYGEGIS  G+L+DLGV+  I+ KSGAW+S++G+R+GQG
Sbjct: 243 TRVKVVKNKVAPPFKQAEFDIMYGEGISKEGDLLDLGVELKILQKSGAWYSYEGERIGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNA 335
           REN K FLR N ++ + +ES +R   
Sbjct: 303 RENVKDFLRANPDVFKEVESRIRTAL 328


>gi|132220|sp|P29246|RECA_AZOVI RecName: Full=Protein RecA; AltName: Full=Recombinase A
          Length = 349

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 214/347 (61%), Positives = 274/347 (78%), Gaps = 2/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI++ +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKRALAAALGQIEKQFGKGAVMRMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L TIA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSTIAEAQKQGATCAFVDAEHALDPDYAAKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDQHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFG+PETTTG NALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 QNANCLVIFINQIRMKIGVMFGNPETTTGANALKFYASVRLDIRRTGAVKESDEVIGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE+IDLGV+  +++KSGAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVQLGLLEKSGAWYSYQGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
            N+  FL +N E+A  +E  +R        S       +   DAD D
Sbjct: 302 ANAAKFLEDNPEVAAAVEKSIRDQLLAAPASARPAALADEPADADLD 348


>gi|227488693|ref|ZP_03919009.1| recombination protein RecA [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227542308|ref|ZP_03972357.1| recombination protein RecA [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227091354|gb|EEI26666.1| recombination protein RecA [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227181908|gb|EEI62880.1| recombination protein RecA [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 391

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 215/368 (58%), Positives = 279/368 (75%), Gaps = 16/368 (4%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +  D+ KAL+AAL +I++ +GKG+IM+LG +      IE +SSG+  +D+ALGIGGFP+G
Sbjct: 26  SGSDREKALDAALKKIEKDFGKGSIMRLGEEK--HPPIEAISSGNTAIDVALGIGGFPRG 83

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTT+ALH IA +QK GG  AF+DAEHALD  YA+KLGVD   LL+SQP
Sbjct: 84  RIVEIYGPESSGKTTVALHAIASAQKEGGIAAFIDAEHALDPEYAKKLGVDTDQLLVSQP 143

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI DML+RSGA+DI+VIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRK+T
Sbjct: 144 DTGEQALEIADMLIRSGAIDIVVIDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKMT 203

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++ +S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR DIRR+ ++KD     G
Sbjct: 204 GALYQSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRIQTLKDGGDAIG 263

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+T++KVVKNK++ PFK  EFDIM+GEGIS    +IDLGV+  IV KSG+WF+++G +LG
Sbjct: 264 NRTKLKVVKNKVSPPFKIAEFDIMFGEGISRESSIIDLGVENGIVMKSGSWFTYEGDQLG 323

Query: 308 QGRENSKIFLRENIEIAENIESLL--------------RQNAGLVADSLLQEPAINTKDD 353
           QG+E S+ FL+ N E+A+ IE  +               ++  L  D +   P ++ +DD
Sbjct: 324 QGKEKSRQFLKSNPELADEIEDKIFRKLKVGKYSAVEDEESDELSDDLVDVVPNVDIEDD 383

Query: 354 ADKDDTDN 361
              DD+++
Sbjct: 384 YSFDDSED 391


>gi|172040554|ref|YP_001800268.1| recombinase A [Corynebacterium urealyticum DSM 7109]
 gi|238058641|sp|B1VDD6|RECA_CORU7 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|171851858|emb|CAQ04834.1| recombinase A [Corynebacterium urealyticum DSM 7109]
          Length = 371

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 205/355 (57%), Positives = 278/355 (78%), Gaps = 5/355 (1%)

Query: 1   MDYRKEMNIV---DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDI 57
           M  +K+       D+SKAL+ A++QI++ +GKGAIM+LG +      I  + SG++ +++
Sbjct: 1   MAPKKKATTAAQKDRSKALDLAMAQIEKDFGKGAIMRLGDENR--PPISAIPSGNIAINV 58

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALGIGGFP+GR+VEIYGPESSGKTT+ALH IA++QK GG  AF+DAEHALD  YA+ LGV
Sbjct: 59  ALGIGGFPRGRVVEIYGPESSGKTTVALHAIAEAQKGGGIAAFIDAEHALDPEYAKALGV 118

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           D   LL+SQPDTGEQALEI DMLVRSGA+D++VIDSVAALTP+AEI+G+MG+S  G+QAR
Sbjct: 119 DTDALLVSQPDTGEQALEIADMLVRSGAIDMVVIDSVAALTPKAEIDGEMGDSHVGLQAR 178

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           LMSQALRK+TS++ ++    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR DIRR+ 
Sbjct: 179 LMSQALRKMTSALYQTGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRIQ 238

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           ++KD   + GN+TR+K+VKNK++ PFK  EFDI+YGEGIS  G ++DLGV A I+ KSG+
Sbjct: 239 ALKDGQDVVGNRTRLKIVKNKVSPPFKIAEFDILYGEGISREGSILDLGVDAGIIKKSGS 298

Query: 298 WFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           WF+++G++LGQG+E ++ FL+ N E+AE ++  + Q   +   +  ++  I  +D
Sbjct: 299 WFTYEGEQLGQGKEKARDFLKSNPELAEQLDDRIMQELKVGPYAKAKDEPIADED 353


>gi|116119154|gb|ABJ74747.1| RecA [Burkholderia sp. M281]
          Length = 347

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 230/350 (65%), Positives = 292/350 (83%), Gaps = 4/350 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+G LGLDIALG+GG P+GR
Sbjct: 2   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGPLGLDIALGVGGLPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+ VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 121 TGEQALEITDALVRSGSIDMNVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 241 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N+  FLREN EIA  IE+ +R++ G+V+   + +   N  +  D+++
Sbjct: 301 GKDNACEFLRENPEIAREIENRIRESLGVVS---MPDGVANEAEAMDEEE 347


>gi|47678136|emb|CAF21831.1| RecA recombinase [Enterococcus durans]
          Length = 346

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 202/340 (59%), Positives = 267/340 (78%), Gaps = 2/340 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  ALEAAL +I++ YGKG+IM+LG +  I + I  + SGSL LD+ALG+GG+P+GRIV
Sbjct: 4   DRKAALEAALKKIEKNYGKGSIMKLGEK--IDQQISTIPSGSLALDVALGVGGYPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ Q+ GGT AF+DAEHALD  YA+KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQRNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+V+DSVAAL PRAEI+G+MG+S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E D+MYG+GIS  GEL+D+ V+  IVDKSGAW+S+K  R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKIAEVDVMYGQGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           EN+KI++  + E+   + +L+R   G+  +  + E A   
Sbjct: 302 ENAKIYMANHPEMMAEVSALVRAAYGIGEEVEVPEEAQAE 341


>gi|293572674|ref|ZP_06683642.1| protein RecA [Enterococcus faecium E980]
 gi|291607260|gb|EFF36614.1| protein RecA [Enterococcus faecium E980]
          Length = 349

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 200/348 (57%), Positives = 270/348 (77%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ YGKG+IM+LG +  I + I  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKAALDAALKKIEKSYGKGSIMKLGEK--IDQQISTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+V+DSVAAL PRAEI+G+MG+S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E D+MYG GIS  GEL+D+ V+  IVDKSGAW+S+K  R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKIAEVDVMYGLGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           EN+KI++  + E+   + +L+R   G+  +  + E     ++   +++
Sbjct: 302 ENAKIYMANHPEMMAEVSALVRAAYGIGEEVAVPEDTKGQEELPLEEE 349


>gi|330818200|ref|YP_004361905.1| Recombinase A [Burkholderia gladioli BSR3]
 gi|327370593|gb|AEA61949.1| Recombinase A [Burkholderia gladioli BSR3]
          Length = 359

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 229/350 (65%), Positives = 290/350 (82%), Gaps = 1/350 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM+LG      E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 11  TAEKSKALAAALAQIEKQFGKGSIMKLGD-AEAKEDIQVVSTGSLGLDIALGVGGLPRGR 69

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 70  VVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPD 129

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 130 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 189

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 190 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 249

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G ++GQ
Sbjct: 250 ETRVKVVKNKVSPPFRESIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGDKIGQ 309

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           G++N++ FLREN +IA  IE+ +R++ G+ A         +  +  D+++
Sbjct: 310 GKDNAREFLRENPDIALEIENRIRESLGVAAMPQEGAAGQSEAEILDEEE 359


>gi|293553653|ref|ZP_06674277.1| protein RecA [Enterococcus faecium E1039]
 gi|291602228|gb|EFF32456.1| protein RecA [Enterococcus faecium E1039]
          Length = 349

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 200/342 (58%), Positives = 268/342 (78%), Gaps = 2/342 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ YGKG+IM+LG +  I + I  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKAALDAALKKIEKSYGKGSIMKLGEK--IDQQISTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+V+DSVAAL PRAEI+G+MG+S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E D+MYG GIS  GEL+D+ V+  IVDKSGAW+S+K  R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKIAEVDVMYGLGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           EN+KI++  + E+   + +L+R   G+  ++ + E     ++
Sbjct: 302 ENAKIYMANHPEMMAEVSALVRAAYGIGEEAAVPEDEKGQEE 343


>gi|76363335|sp|Q6KCK3|RECA_LACPE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|47600757|emb|CAF21791.1| recombinase A [Lactobacillus pentosus]
          Length = 378

 Score =  368 bits (943), Expect = e-99,   Method: Composition-based stats.
 Identities = 193/349 (55%), Positives = 262/349 (75%), Gaps = 2/349 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL +I++ +GKGAIM++G        I  +SSGSL LD ALG+GG+P+GRIVE
Sbjct: 5   RKAALDTALKKIEKNFGKGAIMRMGDAAQTT--ISTISSGSLALDDALGVGGYPRGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGE
Sbjct: 63  IYGPESSGKTTVALHAVAEVQKQGGTAAYIDAENALDPVYAEHLGVNIDDLLLSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q LEI D LV SGAVDI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +++
Sbjct: 123 QGLEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTLN 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++K I +FINQ+R K+GVMFG+PETT GG ALKFY+++RL++RR   IK+  +I GN+ R
Sbjct: 183 KTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATIRLEVRRAEQIKEGTNIIGNRVR 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           +KVVKNK+A PFK+ E DIMYG+GIS  GE++D+  +  IV KSG+W+S+   R+GQGRE
Sbjct: 243 IKVVKNKVAPPFKRAEVDIMYGQGISQTGEIVDMAAEKDIVKKSGSWYSYGDDRIGQGRE 302

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           N+K +L E+ ++   I   +R   G+       + A +   D     +D
Sbjct: 303 NAKKYLDEHPDVMAEIRQKVRDAYGMDQTGEEDDQADDKSKDKATKPSD 351


>gi|116493024|ref|YP_804759.1| RecA protein [Pediococcus pentosaceus ATCC 25745]
 gi|116103174|gb|ABJ68317.1| RecA protein [Pediococcus pentosaceus ATCC 25745]
          Length = 352

 Score =  368 bits (943), Expect = e-99,   Method: Composition-based stats.
 Identities = 189/331 (57%), Positives = 260/331 (78%), Gaps = 2/331 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ +AL  AL +I++ +GKG+IM++G   ++   I  + SGSL LD ALG+GGFPKGRIV
Sbjct: 4   ERQEALNKALKKIEKNFGKGSIMRMGD--AVDTQISTIPSGSLALDDALGVGGFPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYATNLGVDIDSLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ L I D LV SGA+D++VIDSVAAL PRAEI+G+MG++  G+QAR+MSQALRKL+ SI
Sbjct: 122 EEGLAIADALVSSGAIDLVVIDSVAALVPRAEIDGEMGDAHVGLQARMMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+G+MFG+PETT GG ALKFY+++RL++RR   IKD   + GN+ 
Sbjct: 182 NKTKTIALFINQIREKVGIMFGNPETTPGGRALKFYATIRLEVRRAEQIKDGADVIGNRV 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PFK+ E DIMYG GIS  GE+ID+ V+  +V KSG+W+S+  +R+GQGR
Sbjct: 242 RIKVVKNKVAPPFKKAEVDIMYGHGISQTGEMIDMAVEKDLVGKSGSWYSYGDERIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           EN+K ++ E+ ++   I   +R+  G+VAD 
Sbjct: 302 ENAKKYIDEHPDVRAEILGKVREAYGMVADP 332


>gi|113461446|ref|YP_719515.1| recombinase A [Haemophilus somnus 129PT]
 gi|122945386|sp|Q0I4T0|RECA_HAES1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|112823489|gb|ABI25578.1| RecA protein [Haemophilus somnus 129PT]
          Length = 355

 Score =  368 bits (943), Expect = e-99,   Method: Composition-based stats.
 Identities = 228/352 (64%), Positives = 280/352 (79%), Gaps = 9/352 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K+KALEAAL QI++ +GKGAIM+LG    +   IE +S+GSL LD+ALGIGG P GRIV
Sbjct: 6   EKAKALEAALGQIEKQFGKGAIMKLGETQKL--DIEAISTGSLSLDVALGIGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IAQ+QK G TCAF+DAEHALD IYA KLGVD+K LLISQPD G
Sbjct: 64  EIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAEHALDPIYAAKLGVDVKELLISQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVD++++DSVAALTP+AEIEG+MG++  G+QARLMSQALRKLT  I
Sbjct: 124 EQALEICDALVRSGAVDVVIVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLTGQI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S C++VFINQ+RMKIGV+FG+PETTTGGNALKFY+SVRLDIRRVGSIK+ D + GN+T
Sbjct: 184 KNSNCLVVFINQIRMKIGVIFGNPETTTGGNALKFYASVRLDIRRVGSIKNGDEVIGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+QV+F I+YGEGIS  GELI+LGVK  +V+KSGAWFS++G+++GQG+
Sbjct: 244 RVKVVKNKVAPPFRQVDFQILYGEGISRNGELIELGVKHKLVNKSGAWFSYEGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
            N+  +L E+ E A  +E  LR         LL  P      D + +   N+
Sbjct: 304 TNAMKWLAEHPEQAAILEQKLR-------SELLANPEKALLADLEAESESNI 348


>gi|219871364|ref|YP_002475739.1| recombinase A [Haemophilus parasuis SH0165]
 gi|219691568|gb|ACL32791.1| recombinase A [Haemophilus parasuis SH0165]
          Length = 372

 Score =  368 bits (943), Expect = e-99,   Method: Composition-based stats.
 Identities = 224/359 (62%), Positives = 284/359 (79%), Gaps = 2/359 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K++    K +ALEAAL+QI++ +GKG+IM+LG    +   IE VS+GSLGLD+ALGIGG 
Sbjct: 15  KQVPPEQKQQALEAALAQIEKQFGKGSIMKLGQTEQL--DIESVSTGSLGLDLALGIGGL 72

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P GRIVEIYGPESSGKTTL L  IAQ+QK   TCAF+DAEHALD +YAR LGV+  +LLI
Sbjct: 73  PMGRIVEIYGPESSGKTTLTLSLIAQAQKGNKTCAFIDAEHALDPVYARNLGVNTDDLLI 132

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALR
Sbjct: 133 SQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALR 192

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT++I  + C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G +KD D 
Sbjct: 193 KLTANIKNTNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRCGVVKDGDE 252

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           I G++T+VKVVKNK+A PF++V+FDIMYGEGIS   EL+ L      + KSGAWFS+ G 
Sbjct: 253 IIGSETKVKVVKNKVAPPFREVQFDIMYGEGISRMNELLILAEANGFIKKSGAWFSYDGT 312

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           ++GQG+ N+  +L+EN EIA+ +E  +R       +SLL+  A ++ D++D ++ +  E
Sbjct: 313 KIGQGKNNAVKWLKENPEIADKLEQEIRNTLASNPNSLLKVTASDSIDESDVEEFNEEE 371


>gi|22770580|gb|AAN06665.1|AF497237_1 DNA recombinase [Listeria monocytogenes]
          Length = 348

 Score =  368 bits (943), Expect = e-99,   Method: Composition-based stats.
 Identities = 197/344 (57%), Positives = 266/344 (77%), Gaps = 4/344 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GR
Sbjct: 1   MNDRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPD
Sbjct: 59  IIEVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            I++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR   +K    + GN
Sbjct: 179 VINKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK+A P +  E DIMYGEGIS  GEL+D+  +  +++KSG+W+S+K +R+GQ
Sbjct: 239 KTKIKVVKNKVAPPXRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GREN+K +L+E+ +I + I   +R+   +  D   +EP    ++
Sbjct: 299 GRENAKQYLKEHTDIRDEISKRVREEYEI--DGSNKEPLDEGEE 340


>gi|315924490|ref|ZP_07920711.1| recombination protein A [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622194|gb|EFV02154.1| recombination protein A [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 370

 Score =  368 bits (943), Expect = e-99,   Method: Composition-based stats.
 Identities = 205/353 (58%), Positives = 265/353 (75%), Gaps = 6/353 (1%)

Query: 7   MNIVD---KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           M+I D   + KAL+ AL  I++ YGKGA+M+LG  G+    ++V+S+ SL +D+ALGIGG
Sbjct: 12  MDITDAQARKKALDNALKNIEKTYGKGAVMRLGDSGA--RDVDVISTSSLRIDMALGIGG 69

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            PKGRI+EIYGPESSGKTTLALH IA++QK GG  AF+DAEHALD IYA  LGVD+ NL+
Sbjct: 70  VPKGRIIEIYGPESSGKTTLALHIIAEAQKKGGNAAFIDAEHALDPIYAASLGVDIDNLI 129

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPDTGEQALEI + L+RSGA+D+ VIDSVAAL PRAEIEG MG+S  G+ ARLMSQAL
Sbjct: 130 VSQPDTGEQALEILEALLRSGAIDVAVIDSVAALVPRAEIEGTMGDSHVGLHARLMSQAL 189

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT  I  S    +FINQ+R K+GVM+G+PE TTGG ALKFYSSVR+D+RR+ ++K   
Sbjct: 190 RKLTGVIKNSNTATIFINQLREKVGVMYGNPEVTTGGRALKFYSSVRMDVRRIETLKKDG 249

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+TR KVVKNKMA PFK  EFDI+YG+GIS  G+++D+ V+  I+ KSG+WFS+ G
Sbjct: 250 EMIGNRTRCKVVKNKMAPPFKTAEFDIIYGKGISHEGDVLDMAVELDIIKKSGSWFSYNG 309

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           +RLGQGR+N +  L +N ++ + +E  +R +  L        P     DDA +
Sbjct: 310 ERLGQGRDNIRQMLEDNPDLCDEVEGKVRDHY-LNNGEETAAPKEVPMDDAQE 361


>gi|229577464|ref|YP_001172035.2| recombinase A [Pseudomonas stutzeri A1501]
          Length = 348

 Score =  368 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 217/347 (62%), Positives = 277/347 (79%), Gaps = 3/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI++ +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKRALAAALGQIEKQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAEAQKMGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE+IDLGV+  +V+KSGAW+++KG ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVQQGLVEKSGAWYAYKGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
            N+  FL +N EI   IE  +R    LV      +  + ++D  D D
Sbjct: 302 ANAAKFLEDNPEIGREIEQQIRDKL-LVVSGGSSKVNVVSEDLVDAD 347


>gi|85058515|ref|YP_454217.1| recombinase A [Sodalis glossinidius str. 'morsitans']
 gi|60392997|sp|P62220|RECA_SODGL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123725441|sp|Q2NVL3|RECA_SODGM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|37359204|gb|AAN73888.1| DNA recombinase A [Sodalis glossinidius]
 gi|84779035|dbj|BAE73812.1| DNA recombinase A RecA [Sodalis glossinidius str. 'morsitans']
          Length = 355

 Score =  368 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 209/351 (59%), Positives = 276/351 (78%), Gaps = 2/351 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+   TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREVKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GS+K+ D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKEGDVVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+  GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQIMYGEGINIRGELVDLGVKHKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
            N+  FL+++ E+A  ++  LR      A+       + ++D+   +  + 
Sbjct: 304 ANACSFLKDHPEVAAELDKKLRDMLLHSAEGNSLVSDVESEDEGASESNEE 354


>gi|227552708|ref|ZP_03982757.1| recombination protein A [Enterococcus faecium TX1330]
 gi|257888676|ref|ZP_05668329.1| recombinase A [Enterococcus faecium 1,141,733]
 gi|257897366|ref|ZP_05677019.1| recombinase A [Enterococcus faecium Com12]
 gi|257899928|ref|ZP_05679581.1| recombinase A [Enterococcus faecium Com15]
 gi|293378872|ref|ZP_06625027.1| protein RecA [Enterococcus faecium PC4.1]
 gi|227178171|gb|EEI59143.1| recombination protein A [Enterococcus faecium TX1330]
 gi|257824730|gb|EEV51662.1| recombinase A [Enterococcus faecium 1,141,733]
 gi|257833931|gb|EEV60352.1| recombinase A [Enterococcus faecium Com12]
 gi|257837840|gb|EEV62914.1| recombinase A [Enterococcus faecium Com15]
 gi|292642413|gb|EFF60568.1| protein RecA [Enterococcus faecium PC4.1]
          Length = 348

 Score =  368 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 200/342 (58%), Positives = 267/342 (78%), Gaps = 2/342 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ YGKG+IM+LG +  I + I  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKAALDAALKKIEKSYGKGSIMKLGEK--IDQQISTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+V+DSVAAL PRAEI+G+MG+S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E D+MYG GIS  GEL+D+ V+  IVDKSGAW+S+K  R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKIAEVDVMYGLGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           EN+KI++  + E+   + +L+R   G+  +  + E     ++
Sbjct: 302 ENAKIYMANHPEMMAEVSALVRAAYGIGEEVAVPEDTKGQEE 343


>gi|300933047|ref|ZP_07148303.1| recombinase A [Corynebacterium resistens DSM 45100]
          Length = 370

 Score =  368 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 205/355 (57%), Positives = 275/355 (77%), Gaps = 4/355 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D++KAL+ A++QI++ +GKGA+M+LG        I+ +S+G++ +++ALGIGGFP+GR+V
Sbjct: 14  DRAKALDLAMAQIEKDFGKGAVMRLGDDNR--PPIQAISTGNIAINVALGIGGFPRGRVV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA++Q+ GG  AF+DAEHALD  YARKLGVD   LL+SQPDTG
Sbjct: 72  EVYGPESSGKTTVALHAIAEAQRAGGIAAFIDAEHALDPDYARKLGVDTDALLVSQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DIIV+DSVAALTP+AEI+GDMG+S  G+QARLMSQALRK+T ++
Sbjct: 132 EQALEIADMLIRSGAIDIIVVDSVAALTPKAEIDGDMGDSHVGLQARLMSQALRKMTGAL 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR DIRR+ ++KD   + GN+T
Sbjct: 192 YQTGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRIQALKDGQDVVGNRT 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK++ PFK  EFDI+YGEGIS  G +IDLGV+  I+ KSGAW+++ G +LGQG+
Sbjct: 252 RLKVVKNKVSPPFKIAEFDILYGEGISREGSIIDLGVEVGIIKKSGAWYTYDGDQLGQGK 311

Query: 311 ENSKIFLRENIEIAENIESLL-RQ-NAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           E ++ FL+ N E+A  +E  + R+   G  A+   +       +D   D   N +
Sbjct: 312 EKAREFLKANPEMAGELEDRIMRELKVGPYANVKDETEDEVAPEDRPIDLAPNFD 366


>gi|291550041|emb|CBL26303.1| protein RecA [Ruminococcus torques L2-14]
          Length = 379

 Score =  368 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 198/352 (56%), Positives = 274/352 (77%), Gaps = 5/352 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K  N  +K KAL+AA++++++ +GKGA+M+LG  G+    +E V +G L LD+ALG+GG 
Sbjct: 9   KLANNEEKKKALDAAIAKLEKDFGKGAVMRLGESGA-HVAVETVPTGCLSLDLALGLGGV 67

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGR++E+YGPESSGKTT+ALH I++ QK GG   F+DAEHALD +YA+ +GVD+  L I
Sbjct: 68  PKGRVIEVYGPESSGKTTVALHMISEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDELYI 127

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD+G+QALEI + +VRSGA+DIIVIDSVAAL P+ EIEGDMG+S  G+QARLMSQALR
Sbjct: 128 SQPDSGDQALEIAETMVRSGAIDIIVIDSVAALVPKQEIEGDMGDSHVGLQARLMSQALR 187

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT  IS+S CI++FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+D+RR+ ++K    
Sbjct: 188 KLTPVISKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYASVRMDVRRIETLKQSGE 247

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + GN+TR+++VKNK+A PFK+ EFDIM+G+GIS  G+++DL     +V KSGAW++++G+
Sbjct: 248 MVGNRTRIRIVKNKIAPPFKEAEFDIMFGKGISRAGDILDLATNIDLVKKSGAWYAYEGE 307

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           ++GQGREN+K +L  + E+ E ++  +R +  L       E A N   DA+K
Sbjct: 308 KIGQGRENAKAYLESHPEVMETLDQKVRAHYALSG----SEEAENELPDAEK 355


>gi|90020935|ref|YP_526762.1| recombinase A [Saccharophagus degradans 2-40]
 gi|123277374|sp|Q21L79|RECA_SACD2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|89950535|gb|ABD80550.1| recA protein [Saccharophagus degradans 2-40]
          Length = 348

 Score =  368 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 216/326 (66%), Positives = 272/326 (83%), Gaps = 2/326 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
             KSKALEAALSQI R +GKG +M+LG +G   E +  +S+GSLGLD+ALGIGG PKGRI
Sbjct: 3   ASKSKALEAALSQIDRQFGKGTVMRLGDKGR--EKMPAISTGSLGLDVALGIGGLPKGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTL L  IA++Q+ GGTCAFVDAEHALD +YA KLGV++ +L+ISQPD 
Sbjct: 61  VEIYGPESSGKTTLTLQVIAEAQRQGGTCAFVDAEHALDPVYAEKLGVNVDDLIISQPDN 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALE+ DMLVRSGAVD++V+DSVAALTP+AEIEGDMG+   G+QARLMSQALRK+T +
Sbjct: 121 GEQALEVADMLVRSGAVDVLVVDSVAALTPKAEIEGDMGDHHVGLQARLMSQALRKITGN 180

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I  + C+ +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GS+K+ D + G+ 
Sbjct: 181 IKNANCLAIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSVKEGDEVVGSD 240

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQ EF I+YG+GI+  GE++D GVK  ++DK+GAW+S+ G ++GQG
Sbjct: 241 TRVKVVKNKVAPPFKQAEFQILYGQGINRLGEIVDFGVKLGLIDKAGAWYSYNGDKIGQG 300

Query: 310 RENSKIFLRENIEIAENIESLLRQNA 335
           + N+  +LR+N E+AE +E  ++   
Sbjct: 301 KANAMQYLRDNKEVAEFLEQKIKAEL 326


>gi|30141700|emb|CAD82859.1| RecA protein [Burkholderia graminis C4D1M]
          Length = 350

 Score =  368 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 227/331 (68%), Positives = 287/331 (86%), Gaps = 1/331 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG++M+LG  G + E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 10  TAEKSKALAAALAQIEKQFGKGSVMRLG-AGEVVEDIQVVSTGSLGLDIALGVGGLPRGR 68

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPD
Sbjct: 69  VVEIYGPESSGKTTLTLQVIAEMQKIGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPD 128

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 129 TGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 188

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 189 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 248

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQ
Sbjct: 249 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYSGERIGQ 308

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           G++N++ FLREN +IA  IE+ +R++ G+ A
Sbjct: 309 GKDNAREFLRENPDIAREIENRIRESLGVNA 339


>gi|269836955|ref|YP_003319183.1| recA protein [Sphaerobacter thermophilus DSM 20745]
 gi|269786218|gb|ACZ38361.1| recA protein [Sphaerobacter thermophilus DSM 20745]
          Length = 352

 Score =  368 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 204/326 (62%), Positives = 258/326 (79%), Gaps = 1/326 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + ++ +A+E A++QI+R +GKG+IM++G   S  + IE + +GS+ LD+ALG+GG P+GR
Sbjct: 1   MSERDRAIELAMAQIERQFGKGSIMRMGEAESRLQ-IEAIPTGSIALDLALGVGGIPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I EIYGPESSGKTTLA H IA++QK GG  A++DAEHA D +YA + G+ L +LLISQPD
Sbjct: 60  ITEIYGPESSGKTTLAQHIIAEAQKLGGVAAYIDAEHAFDPVYAERCGIKLDDLLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGA+D+IVIDSVAAL PRAEI+GDMG++  G+QARLMSQALRKLT 
Sbjct: 120 TGEQALEICETLVRSGALDVIVIDSVAALVPRAEIDGDMGDAHVGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +ISRS+  ++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+ +IK      G 
Sbjct: 180 AISRSRTAVIFINQLRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIETIKQGQESIGI 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + RV+VVKNK+A PF+Q EFDIMY EGIS  G +ID+G    I+ KSGAWF    +RLGQ
Sbjct: 240 RARVRVVKNKVAPPFRQAEFDIMYNEGISAIGSIIDVGTDLGIIRKSGAWFYLGEERLGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQN 334
           GREN K FL+ N +I  +IE  +R  
Sbjct: 300 GRENVKEFLKANPDILRDIEQQIRAA 325


>gi|310658983|ref|YP_003936704.1| DNA strand exchange and recombination protein [Clostridium
           sticklandii DSM 519]
 gi|308825761|emb|CBH21799.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Clostridium sticklandii]
          Length = 350

 Score =  368 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 216/352 (61%), Positives = 279/352 (79%), Gaps = 4/352 (1%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E  + +K KAL+AA+++I++ +GKG+IM LG    +   IE +S+GS+GLD+A+GIGG P
Sbjct: 3   EKRMEEKRKALDAAIAKIEKDFGKGSIMTLGENAKM--NIETISTGSIGLDVAIGIGGLP 60

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTT+ALH +A++QK GG  AFVDAEHALD +YA+ LGVD+  L++S
Sbjct: 61  KGRIVEIYGPESSGKTTVALHAVAEAQKLGGIAAFVDAEHALDPVYAKALGVDIDKLIVS 120

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEIT+ LVRSGA+DIIV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRK
Sbjct: 121 QPDTGEQALEITESLVRSGAIDIIVVDSVAALVPKAEIEGEMGDSHIGLQARLMSQALRK 180

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           L  SI++SK I +FINQ+R K+GVMFG+PETTTGG ALKFY+SVRLD+R++  IK  D++
Sbjct: 181 LAGSINKSKTITIFINQLREKVGVMFGNPETTTGGRALKFYASVRLDVRKIDIIKQGDTM 240

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            G++TRVKVVKNK+A PFKQ EFDIMYG+GIS  GEL+D+G    I+ KSGAW+S+  +R
Sbjct: 241 LGSRTRVKVVKNKVAPPFKQCEFDIMYGQGISKVGELVDIGANLDIIKKSGAWYSYNEER 300

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           LGQGREN K F  EN E+   +ES +R+   +    +  E A    DD+ ++
Sbjct: 301 LGQGRENVKQFFMENPELMNEVESKVREYFNINTSPI--EIAKTDVDDSKEE 350


>gi|53718415|ref|YP_107401.1| recombinase A [Burkholderia pseudomallei K96243]
 gi|53724718|ref|YP_102098.1| recombinase A [Burkholderia mallei ATCC 23344]
 gi|67639766|ref|ZP_00438601.1| protein RecA [Burkholderia mallei GB8 horse 4]
 gi|76809737|ref|YP_332384.1| recombinase A [Burkholderia pseudomallei 1710b]
 gi|121598818|ref|YP_993968.1| recombinase A [Burkholderia mallei SAVP1]
 gi|124385042|ref|YP_001028365.1| recombinase A [Burkholderia mallei NCTC 10229]
 gi|126441506|ref|YP_001057861.1| recombinase A [Burkholderia pseudomallei 668]
 gi|126448472|ref|YP_001079599.1| recombinase A [Burkholderia mallei NCTC 10247]
 gi|126452699|ref|YP_001065095.1| recombinase A [Burkholderia pseudomallei 1106a]
 gi|166998886|ref|ZP_02264738.1| recA protein [Burkholderia mallei PRL-20]
 gi|167718276|ref|ZP_02401512.1| recombinase A [Burkholderia pseudomallei DM98]
 gi|167737323|ref|ZP_02410097.1| recombinase A [Burkholderia pseudomallei 14]
 gi|167814447|ref|ZP_02446127.1| recombinase A [Burkholderia pseudomallei 91]
 gi|167822913|ref|ZP_02454384.1| recombinase A [Burkholderia pseudomallei 9]
 gi|167844480|ref|ZP_02469988.1| recombinase A [Burkholderia pseudomallei B7210]
 gi|167893005|ref|ZP_02480407.1| recombinase A [Burkholderia pseudomallei 7894]
 gi|167901469|ref|ZP_02488674.1| recombinase A [Burkholderia pseudomallei NCTC 13177]
 gi|167909714|ref|ZP_02496805.1| recombinase A [Burkholderia pseudomallei 112]
 gi|167917736|ref|ZP_02504827.1| recombinase A [Burkholderia pseudomallei BCC215]
 gi|217419940|ref|ZP_03451446.1| RecA protein [Burkholderia pseudomallei 576]
 gi|226199408|ref|ZP_03794966.1| recA protein [Burkholderia pseudomallei Pakistan 9]
 gi|237811009|ref|YP_002895460.1| protein RecA [Burkholderia pseudomallei MSHR346]
 gi|242317165|ref|ZP_04816181.1| recA protein [Burkholderia pseudomallei 1106b]
 gi|254176888|ref|ZP_04883545.1| recA protein [Burkholderia mallei ATCC 10399]
 gi|254181635|ref|ZP_04888232.1| recA protein [Burkholderia pseudomallei 1655]
 gi|254187593|ref|ZP_04894105.1| recA protein [Burkholderia pseudomallei Pasteur 52237]
 gi|254196276|ref|ZP_04902700.1| recA protein [Burkholderia pseudomallei S13]
 gi|254203781|ref|ZP_04910141.1| recA protein [Burkholderia mallei FMH]
 gi|254208758|ref|ZP_04915106.1| recA protein [Burkholderia mallei JHU]
 gi|254260268|ref|ZP_04951322.1| recA protein [Burkholderia pseudomallei 1710a]
 gi|254296286|ref|ZP_04963743.1| recA protein [Burkholderia pseudomallei 406e]
 gi|254360185|ref|ZP_04976455.1| recA protein [Burkholderia mallei 2002721280]
 gi|59798167|sp|Q62MH0|RECA_BURMA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|59798209|sp|Q66X92|RECA_BURPS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|51594210|gb|AAU08168.1| RecA [Burkholderia pseudomallei]
 gi|52208829|emb|CAH34768.1| putative recombinase A [Burkholderia pseudomallei K96243]
 gi|52428141|gb|AAU48734.1| recA protein [Burkholderia mallei ATCC 23344]
 gi|76579190|gb|ABA48665.1| recA protein [Burkholderia pseudomallei 1710b]
 gi|121227628|gb|ABM50146.1| recA protein [Burkholderia mallei SAVP1]
 gi|124293062|gb|ABN02331.1| RecA protein [Burkholderia mallei NCTC 10229]
 gi|126220999|gb|ABN84505.1| RecA protein [Burkholderia pseudomallei 668]
 gi|126226341|gb|ABN89881.1| recA protein [Burkholderia pseudomallei 1106a]
 gi|126241342|gb|ABO04435.1| RecA protein [Burkholderia mallei NCTC 10247]
 gi|147745293|gb|EDK52373.1| recA protein [Burkholderia mallei FMH]
 gi|147750634|gb|EDK57703.1| recA protein [Burkholderia mallei JHU]
 gi|148029425|gb|EDK87330.1| recA protein [Burkholderia mallei 2002721280]
 gi|157805935|gb|EDO83105.1| recA protein [Burkholderia pseudomallei 406e]
 gi|157935273|gb|EDO90943.1| recA protein [Burkholderia pseudomallei Pasteur 52237]
 gi|160697929|gb|EDP87899.1| recA protein [Burkholderia mallei ATCC 10399]
 gi|169653019|gb|EDS85712.1| recA protein [Burkholderia pseudomallei S13]
 gi|184212173|gb|EDU09216.1| recA protein [Burkholderia pseudomallei 1655]
 gi|217397244|gb|EEC37260.1| RecA protein [Burkholderia pseudomallei 576]
 gi|225928484|gb|EEH24513.1| recA protein [Burkholderia pseudomallei Pakistan 9]
 gi|237506701|gb|ACQ99019.1| protein RecA [Burkholderia pseudomallei MSHR346]
 gi|238520364|gb|EEP83825.1| protein RecA [Burkholderia mallei GB8 horse 4]
 gi|242140404|gb|EES26806.1| recA protein [Burkholderia pseudomallei 1106b]
 gi|243064966|gb|EES47152.1| recA protein [Burkholderia mallei PRL-20]
 gi|254218957|gb|EET08341.1| recA protein [Burkholderia pseudomallei 1710a]
          Length = 356

 Score =  368 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 232/357 (64%), Positives = 293/357 (82%), Gaps = 3/357 (0%)

Query: 1   MDYRKEMN--IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIA 58
           M+  K+ +    +KSKAL AAL+QI++ +GKG+IM+LG  G   E I+VVS+GSLGLDIA
Sbjct: 1   MEESKKGSGLTAEKSKALAAALAQIEKQFGKGSIMRLGD-GEAVEDIQVVSTGSLGLDIA 59

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV+
Sbjct: 60  LGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYASKLGVN 119

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +  LLISQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG++LPG+QARL
Sbjct: 120 VPELLISQPDTGEQALEIVDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDALPGLQARL 179

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GS
Sbjct: 180 MSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGS 239

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW
Sbjct: 240 IKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAW 299

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           +S+ G+++GQG++N++ FLREN EIA  IE+ +R++ G+ A            D+ +
Sbjct: 300 YSYSGEKIGQGKDNAREFLRENPEIAREIENRIRESLGVAAMPQGAGSEAEIMDEEE 356


>gi|157326959|gb|ABV44592.1| RecA [Burkholderia cenocepacia]
          Length = 319

 Score =  368 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 222/318 (69%), Positives = 277/318 (87%), Gaps = 1/318 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 1   QIEKHFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LV
Sbjct: 60  TLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FIN
Sbjct: 120 RSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ 
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN 
Sbjct: 240 PFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENP 299

Query: 322 EIAENIESLLRQNAGLVA 339
           EIA  IE+ +R++ G+V+
Sbjct: 300 EIAREIENRIRESLGVVS 317


>gi|31540561|gb|AAP49243.1| RecA [Mycobacterium phlei]
          Length = 321

 Score =  368 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 201/319 (63%), Positives = 261/319 (81%), Gaps = 2/319 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE AL+ I++ +GKG+ M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 5   PDREKALELALAHIEKNHGKGSGMRLGEE--VHQPISVIPTGSIALDVALGIGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 63  IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 123 GEQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +S S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+
Sbjct: 183 LSNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTEAVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVK+VKNK++ PFKQ EFDI+YG GIS  G LID+GV+   + KSG+WF+++G++LGQG
Sbjct: 243 TRVKIVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVEQGFIRKSGSWFTYEGEQLGQG 302

Query: 310 RENSKIFLRENIEIAENIE 328
           +EN++ FL EN ++A  IE
Sbjct: 303 KENARNFLLENPDVANEIE 321


>gi|224551699|gb|ACN54249.1| RecA [Burkholderia sp. MDIII-T536]
          Length = 319

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 222/317 (70%), Positives = 276/317 (87%), Gaps = 1/317 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESLLRQNAGLVA 339
           IA  IE+ +R++ G+V+
Sbjct: 300 IAREIENRIRESLGVVS 316


>gi|304310615|ref|YP_003810213.1| RecA/RadA recombinase [gamma proteobacterium HdN1]
 gi|301796348|emb|CBL44556.1| RecA/RadA recombinase [gamma proteobacterium HdN1]
          Length = 343

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 221/344 (64%), Positives = 284/344 (82%), Gaps = 4/344 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL+QI+R +GKG+IM++G Q  + + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKRKALGAALAQIERQFGKGSIMRMGDQ--LQQAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G  CAFVDAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAQAQKQGAVCAFVDAEHALDPIYANKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+IV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 122 EQALEITDMLVRSNAVDVIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGNV 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GS+K  + +TG++T
Sbjct: 182 KQANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSVKQGEEVTGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE++DLGV   ++DKSGAW+++KG ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQTEFQILYGKGIYREGEILDLGVACGVIDKSGAWYAYKGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
            N+  FL E +E+++ IE  +R +  L+A  L+ + +    +DA
Sbjct: 302 ANAAKFLEEKVEVSQEIEQQIRTS--LMASELVSKSSEPELEDA 343


>gi|300858671|ref|YP_003783654.1| recombinase A [Corynebacterium pseudotuberculosis FRC41]
 gi|1350560|sp|P48288|RECA_CORP2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|1098613|gb|AAA82608.1| RecA [Corynebacterium pseudotuberculosis]
 gi|300686125|gb|ADK29047.1| recombinase A [Corynebacterium pseudotuberculosis FRC41]
 gi|302206378|gb|ADL10720.1| Recombinase A [Corynebacterium pseudotuberculosis C231]
 gi|302330934|gb|ADL21128.1| Recombinase A [Corynebacterium pseudotuberculosis 1002]
 gi|308276621|gb|ADO26520.1| Recombinase A [Corynebacterium pseudotuberculosis I19]
          Length = 369

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 211/355 (59%), Positives = 271/355 (76%), Gaps = 6/355 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+AAL+ I++ +GKGA+M+LG        I  +SSG+  +D+ALGIGGFPKGRIV
Sbjct: 16  NRQKALDAALAMIEKDFGKGAVMRLGDDNR--PPISAISSGNTAIDVALGIGGFPKGRIV 73

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IAQ+Q+ GG  AF+DAEHALD  YARKLGVD   LL+SQPDTG
Sbjct: 74  EVYGPESSGKTTVALHAIAQAQRAGGIAAFIDAEHALDPDYARKLGVDTDALLVSQPDTG 133

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DIIVIDSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 134 EQALEIADMLVRSGAIDIIVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 193

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR D+RR+ ++KD     GN+T
Sbjct: 194 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDVRRIQTLKDGQDAIGNRT 253

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK++ PFK  EFDIMYGEGIS    +IDLGV   I+ KSG+WF++ G +LGQG+
Sbjct: 254 RLKVVKNKVSPPFKIAEFDIMYGEGISRESSIIDLGVDNGIIKKSGSWFTYDGDQLGQGK 313

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA----DSLLQEPAINTKDDADKDDTDN 361
           E  +++L++  E+A+ IE  + +   +      +  L +  ++   + D DD DN
Sbjct: 314 EKVRLYLKQTPELADEIEEKIFRALQIGKYANQNDALTDDPVDMVPNIDFDDEDN 368


>gi|238028533|ref|YP_002912764.1| recombinase A [Burkholderia glumae BGR1]
 gi|237877727|gb|ACR30060.1| Recombinase A [Burkholderia glumae BGR1]
          Length = 360

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 232/354 (65%), Positives = 295/354 (83%), Gaps = 6/354 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM+LG      E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 11  TAEKSKALAAALAQIEKQFGKGSIMKLGD-AEAKEDIQVVSTGSLGLDIALGVGGLPRGR 69

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 70  VVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 129

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 130 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 189

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 190 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 249

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 250 ETRVKVVKNKVSPPFRESIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 309

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK--DDTD 360
           G++N++ FLREN +IA  IE+ +R++ G+ A   + +  I    +AD+  D+ +
Sbjct: 310 GKDNAREFLRENPDIAREIENRIRESLGVAA---MPQDVIGGGSEADEVLDEEE 360


>gi|225936952|emb|CAJ82773.1| recA recombinase [Enterococcus haemoperoxidus]
          Length = 349

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 200/348 (57%), Positives = 268/348 (77%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ +GKG++M+LG +  I + I  + SGSL LD+ALG+GG+P+GRIV
Sbjct: 4   DRKVALDAALKKIEKNFGKGSVMKLGEK--IDQQISTIPSGSLALDVALGVGGYPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA  Q+ GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIASVQQQGGTAAFIDAEHALDPQYAQALGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGA+DI+VIDSVAAL PRAEI+G+MG S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAIDIVVIDSVAALVPRAEIDGEMGASHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY++VRL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKQGTDIIGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+ V+  IVDKSGAW+S+K +R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGQGISQEGELLDMAVEKDIVDKSGAWYSYKEERIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           EN K+++ E+ E+ E +   +R   G+   + + E     ++    ++
Sbjct: 302 ENVKVYMTEHPEMVEEVSKRVRDAFGIGDGTAIVEEEQAQEELPLDEE 349


>gi|262376180|ref|ZP_06069410.1| recA protein [Acinetobacter lwoffii SH145]
 gi|262308781|gb|EEY89914.1| recA protein [Acinetobacter lwoffii SH145]
          Length = 347

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 222/347 (63%), Positives = 281/347 (80%), Gaps = 9/347 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K+KAL AALSQI++ +GK  +M+LG      + +E VS+GSL LDIALGIGG PKGRIV
Sbjct: 4   NKNKALNAALSQIEKQFGKNTVMRLGDNT--VQAVEAVSTGSLTLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ L  IA+ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD G
Sbjct: 62  EIYGPESSGKTTMTLQAIAECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IV+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T + 
Sbjct: 122 EQALEIADMLVRSGAIDMIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNA 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G +K+ D I G++T
Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNKMA PFK+  F I+YG+G++  GELIDL V+  IV K+GAW+S++G ++GQG+
Sbjct: 242 KVKVVKNKMAPPFKEALFQILYGKGVNHLGELIDLAVQQEIVQKAGAWYSYQGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
            N+  +L E+ E+A+ IE L+R       D LL +  +  +DD+ ++
Sbjct: 302 NNTIRYLEEHKEMAQTIEKLIR-------DQLLTKAVVVEEDDSKEE 341


>gi|296135282|ref|YP_003642524.1| recA protein [Thiomonas intermedia K12]
 gi|294339384|emb|CAZ87740.1| Protein recA (Recombinase A) [Thiomonas sp. 3As]
 gi|295795404|gb|ADG30194.1| recA protein [Thiomonas intermedia K12]
          Length = 353

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 227/352 (64%), Positives = 291/352 (82%), Gaps = 1/352 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M+  K     +K+KAL AALSQI++ +GKG IM++   G     I+VVS+GSLGLDIALG
Sbjct: 1   MEQGKSAVNPEKAKALAAALSQIEKQFGKGTIMRM-DDGEAQRDIQVVSTGSLGLDIALG 59

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGTCAF+DAEHALD  YA KLGV L 
Sbjct: 60  VGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTCAFIDAEHALDVQYASKLGVQLP 119

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +LLISQPDTGEQALEI D LVRSG+VD+IVIDSVAALTP+AEIEG+MG+SLPG+QARLMS
Sbjct: 120 DLLISQPDTGEQALEIVDALVRSGSVDMIVIDSVAALTPKAEIEGEMGDSLPGLQARLMS 179

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT++I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK
Sbjct: 180 QALRKLTANIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIK 239

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             + + G++TRVKVVKNK+A PFKQ EFDI+YGEGIS  GE++DLGV A +V+KSG+W++
Sbjct: 240 KGEEVVGSETRVKVVKNKVAPPFKQAEFDILYGEGISREGEIVDLGVLAKLVEKSGSWYA 299

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           + G+++GQG++N++ FL+ N +IA  IE+ +R + G+   + L    ++ ++
Sbjct: 300 YNGEKIGQGKDNAREFLKSNPDIAREIENKVRASLGVPEANALMTADMSEEE 351


>gi|69245406|ref|ZP_00603401.1| RecA bacterial DNA recombination protein [Enterococcus faecium DO]
 gi|257879817|ref|ZP_05659470.1| recombinase A [Enterococcus faecium 1,230,933]
 gi|257882543|ref|ZP_05662196.1| recombinase A [Enterococcus faecium 1,231,502]
 gi|257891658|ref|ZP_05671311.1| recombinase A [Enterococcus faecium 1,231,410]
 gi|257894133|ref|ZP_05673786.1| recombinase A [Enterococcus faecium 1,231,408]
 gi|258614242|ref|ZP_05712012.1| recombinase A [Enterococcus faecium DO]
 gi|260559490|ref|ZP_05831671.1| recA [Enterococcus faecium C68]
 gi|293563663|ref|ZP_06678104.1| protein RecA [Enterococcus faecium E1162]
 gi|293570073|ref|ZP_06681153.1| protein RecA [Enterococcus faecium E1071]
 gi|294617393|ref|ZP_06697028.1| protein RecA [Enterococcus faecium E1679]
 gi|294623664|ref|ZP_06702497.1| protein RecA [Enterococcus faecium U0317]
 gi|314939076|ref|ZP_07846337.1| protein RecA [Enterococcus faecium TX0133a04]
 gi|314943238|ref|ZP_07850022.1| protein RecA [Enterococcus faecium TX0133C]
 gi|314949346|ref|ZP_07852688.1| protein RecA [Enterococcus faecium TX0082]
 gi|314952877|ref|ZP_07855846.1| protein RecA [Enterococcus faecium TX0133A]
 gi|314993854|ref|ZP_07859189.1| protein RecA [Enterococcus faecium TX0133B]
 gi|314997699|ref|ZP_07862621.1| protein RecA [Enterococcus faecium TX0133a01]
 gi|76363327|sp|Q6KCJ6|RECA_ENTFC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|47678138|emb|CAF21832.1| RecA recombinase [Enterococcus faecium]
 gi|68195788|gb|EAN10224.1| RecA bacterial DNA recombination protein [Enterococcus faecium DO]
 gi|257814045|gb|EEV42803.1| recombinase A [Enterococcus faecium 1,230,933]
 gi|257818201|gb|EEV45529.1| recombinase A [Enterococcus faecium 1,231,502]
 gi|257828018|gb|EEV54644.1| recombinase A [Enterococcus faecium 1,231,410]
 gi|257830512|gb|EEV57119.1| recombinase A [Enterococcus faecium 1,231,408]
 gi|260074589|gb|EEW62910.1| recA [Enterococcus faecium C68]
 gi|291587445|gb|EFF19329.1| protein RecA [Enterococcus faecium E1071]
 gi|291596341|gb|EFF27599.1| protein RecA [Enterococcus faecium E1679]
 gi|291596879|gb|EFF28097.1| protein RecA [Enterococcus faecium U0317]
 gi|291604347|gb|EFF33840.1| protein RecA [Enterococcus faecium E1162]
 gi|313588275|gb|EFR67120.1| protein RecA [Enterococcus faecium TX0133a01]
 gi|313591707|gb|EFR70552.1| protein RecA [Enterococcus faecium TX0133B]
 gi|313595031|gb|EFR73876.1| protein RecA [Enterococcus faecium TX0133A]
 gi|313598042|gb|EFR76887.1| protein RecA [Enterococcus faecium TX0133C]
 gi|313641610|gb|EFS06190.1| protein RecA [Enterococcus faecium TX0133a04]
 gi|313644295|gb|EFS08875.1| protein RecA [Enterococcus faecium TX0082]
          Length = 349

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 200/342 (58%), Positives = 267/342 (78%), Gaps = 2/342 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ YGKG+IM+LG +  I + I  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKAALDAALKKIEKSYGKGSIMKLGEK--IDQQISTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+V+DSVAAL PRAEI+G+MG+S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E D+MYG GIS  GEL+D+ V+  IVDKSGAW+S+K  R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKIAEVDVMYGLGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           EN+KI++  + E+   + +L+R   G+  +  + E     ++
Sbjct: 302 ENAKIYMANHPEMMAEVSALVRAAYGIGEEVAVPEDEKGQEE 343


>gi|225936942|emb|CAJ82767.1| recA recombinase [Enterococcus asini]
          Length = 348

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 205/341 (60%), Positives = 270/341 (79%), Gaps = 2/341 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ YGKGA+M+LG +  I + I V+ SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKTALDAALKKIEKNYGKGAVMKLGEK--IDQQIAVIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK+GGT AF+DAEHALD +YA+KLGVD+  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKSGGTAAFIDAEHALDPLYAQKLGVDIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVVDSVAALVPRAEIEGEMGDSHMGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R KIGVMFG+PETT GG ALKFY+++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKIGVMFGNPETTPGGRALKFYATIRLEVRRAEQLKSGTDIIGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+ V   IVDKSGAW+++KG R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKLAEVDIMYGQGISQEGELLDMAVDKDIVDKSGAWYAYKGDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           +N+K +++E+ E+   I  L+R   G+  +  +       +
Sbjct: 302 DNAKNYMKEHPEMKAEINQLVRAAYGIGDEEEVVAVEGQEE 342


>gi|71361898|gb|AAZ30056.1| recombinant protein A [Moraxella catarrhalis O35E]
          Length = 349

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 223/351 (63%), Positives = 281/351 (80%), Gaps = 6/351 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AAL+QI++ +GK  IM LG + +    ++VVS+GSLGLDIALGIGG PKGRI+
Sbjct: 4   NKEKALKAALAQIEKQFGKNTIMHLGDETAKL-DVDVVSTGSLGLDIALGIGGLPKGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L TIA+ QK GGTCAF+DAEHALD IYA+KLGV++ +LL+SQPD G
Sbjct: 63  EIFGPESSGKTTLTLQTIAECQKQGGTCAFIDAEHALDPIYAKKLGVNIDDLLVSQPDNG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T + 
Sbjct: 123 EQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNA 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+KD D I G++T
Sbjct: 183 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDGDEIIGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV+KNKMA PF+Q EF IMYGEGI+  GE+IDLGV    V KSGAW+S+   ++GQG+
Sbjct: 243 RVKVIKNKMAPPFRQTEFQIMYGEGINRLGEVIDLGVDIGAVGKSGAWYSYGDGKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
            N+  +L+EN  IA  IE+ +R+            P + + +  +  + DN
Sbjct: 303 ANTVKYLQENPAIASEIEAKVRE-----IKLATVTPIVESDEPEEHLEDDN 348


>gi|38234031|ref|NP_939798.1| recombinase A [Corynebacterium diphtheriae NCTC 13129]
 gi|60392992|sp|P62213|RECA_CORDI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|38200293|emb|CAE49978.1| Recombinase A [Corynebacterium diphtheriae]
          Length = 372

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 209/343 (60%), Positives = 268/343 (78%), Gaps = 2/343 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+AAL+ I++ +GKGA+M+LG +      I  +SSG+  +D+ALGIGGFP+GRIV
Sbjct: 16  NRKKALDAALAMIEKDFGKGAVMRLGDENR--PPISAISSGNTAIDVALGIGGFPRGRIV 73

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IAQ+QK GG  AF+DAEHALD  YARKLGVD   LL+SQPDTG
Sbjct: 74  EVYGPESSGKTTVALHAIAQAQKAGGIAAFIDAEHALDPDYARKLGVDTDALLVSQPDTG 133

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DIIVIDSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 134 EQALEIADMLVRSGAIDIIVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 193

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR D+RR+ ++KD     GN+T
Sbjct: 194 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDVRRIQTLKDGQDAIGNRT 253

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK++ PFK  EFDIMYGEGIS    +IDLGV   I+ KSG+WF+++G +LGQG+
Sbjct: 254 RLKVVKNKVSPPFKIAEFDIMYGEGISRESSIIDLGVDNGIIKKSGSWFTYEGDQLGQGK 313

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           E  +++L+E  E+A+ IE  + +   +   + L++      DD
Sbjct: 314 EKVRLYLKETPELADEIEDKIFRALHIGKYAALKDADDALTDD 356


>gi|307566245|ref|ZP_07628691.1| protein RecA [Prevotella amnii CRIS 21A-A]
 gi|307345049|gb|EFN90440.1| protein RecA [Prevotella amnii CRIS 21A-A]
          Length = 341

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 201/334 (60%), Positives = 269/334 (80%), Gaps = 3/334 (0%)

Query: 2   DYRKEMNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +  KE +  + K KAL+AA+++I++ +GKGAIM++G    I E I+V+ +GSLGLD+ALG
Sbjct: 5   NNEKENSAAEGKLKALQAAMAKIEKDFGKGAIMKMGD--RITEKIDVIPTGSLGLDVALG 62

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GGFP+GRIVEI+GPESSGKTTLALH IA++QK GG  AF+DAEHA D  YA  LGVD+ 
Sbjct: 63  VGGFPRGRIVEIFGPESSGKTTLALHAIAEAQKQGGVAAFIDAEHAFDPTYAAALGVDID 122

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL ISQPD GEQAL+I D L+ S AVD++V+DSVAALTP+ EIEG+MG+S+ G+ ARLMS
Sbjct: 123 NLWISQPDNGEQALQIADQLISSSAVDLLVVDSVAALTPKKEIEGEMGDSVVGLHARLMS 182

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLTS+IS++    +FINQ+R KIG+ FG+PETTTGGNALKFY+SVR+D+R+   IK
Sbjct: 183 QALRKLTSTISKTNTCCIFINQLREKIGMTFGNPETTTGGNALKFYASVRVDVRKSTQIK 242

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D D++ GN T+VK+VKNK+A PF++ EFDI++GEGIS  GE+IDLGV+  I+ KSG+WFS
Sbjct: 243 DGDNVLGNLTKVKIVKNKVAPPFRKCEFDIIFGEGISKLGEIIDLGVEYDIIKKSGSWFS 302

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
           +   +L QGR+  K  L++N E++E +E L+++ 
Sbjct: 303 YGDTKLAQGRDGVKNMLKDNPELSEELERLIKEA 336


>gi|226945899|ref|YP_002800972.1| recombinase A [Azotobacter vinelandii DJ]
 gi|259563331|sp|C1DSQ4|RECA_AZOVD RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226720826|gb|ACO79997.1| bacterial DNA recombination protein [Azotobacter vinelandii DJ]
          Length = 349

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 215/347 (61%), Positives = 275/347 (79%), Gaps = 2/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI++ +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKRALAAALGQIEKQFGKGAVMRMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L TIA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSTIAEAQKQGATCAFVDAEHALDPDYAAKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDQHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKESDEVIGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE+IDLGV+  +++KSGAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVQLGLLEKSGAWYSYQGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
            N+  FL +N E+A  +E  +R        S       +   DAD D
Sbjct: 302 ANAAKFLEDNPEVAAAVEKSIRDQLLAAPASARPAALADEPADADLD 348


>gi|82701154|ref|YP_410720.1| recombinase A [Nitrosospira multiformis ATCC 25196]
 gi|123768338|sp|Q2YD43|RECA_NITMU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|82409219|gb|ABB73328.1| RecA protein [Nitrosospira multiformis ATCC 25196]
          Length = 339

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 220/338 (65%), Positives = 283/338 (83%), Gaps = 2/338 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++SKAL AALSQI++ +GKG+IM+LG    + + ++V+S+GSLGLDIALG+GG P+GRIV
Sbjct: 4   NRSKALAAALSQIEKQFGKGSIMRLG-ASDVGKDVQVISTGSLGLDIALGVGGLPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ Q+ GGT AF+DAEHALDS YA+KLGV++++LLISQPD G
Sbjct: 63  EIYGPESSGKTTLTLQVIAEMQRMGGTAAFIDAEHALDSQYAQKLGVNVQDLLISQPDNG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG++D++V+DSVAALTPRAEIEG+MGE   G+ ARLMSQALRKLT +I
Sbjct: 123 EQALEIADMLVRSGSIDVVVVDSVAALTPRAEIEGEMGEPQMGLHARLMSQALRKLTGNI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR GSIK  + + G++T
Sbjct: 183 KRSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGSIKKGEEVIGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EFDI+YGEGIS  GE+I+LGV+  ++DKSGAW+++KG ++GQG+
Sbjct: 243 RVKVVKNKVAPPFRQAEFDILYGEGISREGEIIELGVQHKLIDKSGAWYAYKGDKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348
           +N + +L+E+ +IA  IES +R   G V++     P  
Sbjct: 303 DNVREYLKEHRDIAMEIESKIRAAVG-VSNPAEPAPVE 339


>gi|148978203|ref|ZP_01814733.1| recombinase A [Vibrionales bacterium SWAT-3]
 gi|145962625|gb|EDK27901.1| recombinase A [Vibrionales bacterium SWAT-3]
          Length = 345

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 211/341 (61%), Positives = 275/341 (80%), Gaps = 3/341 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRI 
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMKLGENRTM--DVETISTGSLSLDIALGAGGLPMGRIT 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLELIAAAQRQGKTCAFIDAEHALDPIYARKLGVDIDNLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RK+T ++
Sbjct: 124 EQALEIVDALARSGAVDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKITGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++K+ D + GN+T
Sbjct: 184 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A+PFKQ E  I+YG+G + +GELIDLGVK  +V+K+GAW+S++G ++GQG+
Sbjct: 244 RIKVVKNKIAAPFKQAETQILYGKGFNRYGELIDLGVKNKLVEKAGAWYSYQGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
            N+  ++ EN  IAE ++  LR+   L   +L +EP     
Sbjct: 304 ANACKYIEENSHIAEELDKKLRELL-LTPTTLDEEPLEEGD 343


>gi|326562574|gb|EGE12887.1| recombinase A [Moraxella catarrhalis 103P14B1]
 gi|326564101|gb|EGE14341.1| recombinase A [Moraxella catarrhalis 12P80B1]
 gi|326573518|gb|EGE23481.1| recombinase A [Moraxella catarrhalis 101P30B1]
 gi|326577768|gb|EGE27641.1| recombinase A [Moraxella catarrhalis O35E]
          Length = 349

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 223/351 (63%), Positives = 281/351 (80%), Gaps = 6/351 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AAL+QI++ +GK  IM LG + +    ++VVS+GSLGLDIALGIGG PKGRI+
Sbjct: 4   NKEKALKAALAQIEKQFGKNTIMHLGDETAKL-DVDVVSTGSLGLDIALGIGGLPKGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L TIA+ QK GGTCAF+DAEHALD IYA+KLGV++ +LL+SQPD G
Sbjct: 63  EIFGPESSGKTTLTLQTIAECQKQGGTCAFIDAEHALDPIYAKKLGVNIDDLLVSQPDNG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T + 
Sbjct: 123 EQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNA 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+KD D I G++T
Sbjct: 183 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDGDEIIGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV+KNKMA PF+Q EF IMYGEGI+  GE+IDLGV    V KSGAW+S+   ++GQG+
Sbjct: 243 RVKVIKNKMAPPFRQTEFQIMYGEGINRLGEVIDLGVDIGAVGKSGAWYSYGDGKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
            N+  +L+EN  IA  IE+ +R+            P + + +  +  + DN
Sbjct: 303 ANTVKYLQENPAIASEIEAKVRE-----IKLATVTPIVESDESEEHLEDDN 348


>gi|257886059|ref|ZP_05665712.1| recombinase A [Enterococcus faecium 1,231,501]
 gi|257821915|gb|EEV49045.1| recombinase A [Enterococcus faecium 1,231,501]
          Length = 349

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 200/348 (57%), Positives = 270/348 (77%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ YGKG+IM+LG +  I + I  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKAALDAALKKIEKSYGKGSIMKLGEK--IDQQISTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+V+DSVAAL PRAEI+G+MG+S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E D+MYG GIS  GEL+D+ V+  IVDKSGAW+S+K  R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKIAEVDVMYGLGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           EN+KI++  + E+   + +L+R   G+  +  + E     ++   +++
Sbjct: 302 ENAKIYMANHPEMMAEVSALVRAAYGIGEEVAVPEDEKGQEELPLEEE 349


>gi|260591294|ref|ZP_05856752.1| protein RecA [Prevotella veroralis F0319]
 gi|260536660|gb|EEX19277.1| protein RecA [Prevotella veroralis F0319]
          Length = 339

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 208/323 (64%), Positives = 268/323 (82%), Gaps = 2/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+AA+S+I++ +GKG+IM++G +    E ++V+ +GS+ LD ALG+GG+P+GRI+E
Sbjct: 13  KLKALQAAMSKIEKDFGKGSIMRMGDEQ--IENVDVIPTGSVTLDTALGVGGYPRGRIIE 70

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD GE
Sbjct: 71  IYGPESSGKTTLAIHAIAEAQKQGGIAAFIDAEHAFDRFYAEKLGVDVDNLWISQPDNGE 130

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RS A+DI+V+DSVAALTP+ EIEGDMG+S  G+QARLMSQALRKLTS+IS
Sbjct: 131 QALEIADQLIRSSAIDILVVDSVAALTPKKEIEGDMGDSAVGLQARLMSQALRKLTSTIS 190

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGVMFG+PETTTGGNALKFYSSVRLDIRRV SIK+ D + GNQ R
Sbjct: 191 KTNTCCIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRVTSIKNGDQVIGNQVR 250

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNK+A PF++ EF+I +GEGIS  GE++DLGV+ +I+ KSG+WFS+ G +L QGR+
Sbjct: 251 VKIVKNKVAPPFRKAEFEITFGEGISKIGEIVDLGVQYNIIQKSGSWFSYNGTKLAQGRD 310

Query: 312 NSKIFLRENIEIAENIESLLRQN 334
            +K  L++N E+AE IE L++Q 
Sbjct: 311 ATKTMLKDNPELAEEIEGLIKQA 333


>gi|167561698|ref|ZP_02354614.1| recombinase A [Burkholderia oklahomensis EO147]
 gi|167568934|ref|ZP_02361808.1| recombinase A [Burkholderia oklahomensis C6786]
          Length = 359

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 232/360 (64%), Positives = 298/360 (82%), Gaps = 3/360 (0%)

Query: 1   MDYRKEMN--IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIA 58
           M+  K+ +    +KSKAL AAL+QI++ +GKG+IM+LG  G + E I+VVS+GSLGLDIA
Sbjct: 1   MEEGKKGSGMTAEKSKALAAALAQIEKQFGKGSIMRLGD-GEVVEDIQVVSTGSLGLDIA 59

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV+
Sbjct: 60  LGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDVQYASKLGVN 119

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +  LLISQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG++LPG+QARL
Sbjct: 120 VPELLISQPDTGEQALEIVDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDALPGLQARL 179

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRKLT SI R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GS
Sbjct: 180 MSQALRKLTGSIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGS 239

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE++DLGV+A IVDK+GAW
Sbjct: 240 IKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIVDLGVQAKIVDKAGAW 299

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           +S+ G+++GQG++N++ FLREN EIA  IE+ +R++ G+ A       A +  +  D+++
Sbjct: 300 YSYSGEKIGQGKDNAREFLRENSEIAREIENRIRESLGVAAMPQGANSANSKAEIMDEEE 359


>gi|224551673|gb|ACN54236.1| RecA [Burkholderia sp. FC65]
 gi|224551707|gb|ACN54253.1| RecA [Burkholderia cenocepacia]
          Length = 318

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 221/317 (69%), Positives = 276/317 (87%), Gaps = 1/317 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESLLRQNAGLVA 339
           IA  IE+ +R++ G+V+
Sbjct: 300 IAREIENRIRESLGVVS 316


>gi|157326955|gb|ABV44590.1| RecA [Burkholderia cenocepacia]
          Length = 327

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 221/317 (69%), Positives = 276/317 (87%), Gaps = 1/317 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 10  IEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 68

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 69  LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 128

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 129 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 188

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 189 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 248

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 249 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 308

Query: 323 IAENIESLLRQNAGLVA 339
           IA  IE+ +R++ G+V+
Sbjct: 309 IAREIENRIRESLGVVS 325


>gi|76363329|sp|Q6KCJ5|RECA_ENTHR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|47678140|emb|CAF21833.1| RecA recombinase [Enterococcus hirae]
          Length = 346

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 199/340 (58%), Positives = 265/340 (77%), Gaps = 2/340 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ YGKG+IM+LG +  I + +  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKAALDAALKKIEKNYGKGSIMKLGEK--IDQQVSTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+V+DSVAAL PRAEI+G+MG+S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E D+MYG+GIS  GEL+D+ V+  IVDKSGAW+S+K  R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKIAEVDVMYGQGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           EN+K ++  + E+   + +L+R   G+  D  + E     
Sbjct: 302 ENAKNYMSTHPEMMAEVSALVRAAYGIGEDVEIPEETQAE 341


>gi|47678150|emb|CAF21838.1| RecA recombinase [Enterococcus raffinosus]
          Length = 349

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 200/348 (57%), Positives = 270/348 (77%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AA+ +I++ YGKG+IM+LG +  + + I  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKAALDAAMKKIEKNYGKGSIMKLGEK--VDQQISTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA++LGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKHGGTAAFIDAEHALDPQYAQRLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDIIVIDSVAAL PRAEI+G+MG++  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIIVIDSVAALVPRAEIDGEMGDAHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I VFINQ+R K+GVMFG+PETT GG ALKFY++VRL++RR   +K+   I GN+T
Sbjct: 182 NKTKTIAVFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKNGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG GIS  GEL+D+ V+  I+DKSGAW+ +K  R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGLGISQEGELLDMAVEQDIIDKSGAWYGYKEDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           EN+K +L ++ E+   + + +R   G+  D+   +     +++   D+
Sbjct: 302 ENAKKYLADHPEMMAEVATRVRAAYGIGDDAAAADAEEAGQEELPLDE 349


>gi|146308037|ref|YP_001188502.1| recombinase A [Pseudomonas mendocina ymp]
 gi|145576238|gb|ABP85770.1| RecA protein [Pseudomonas mendocina ymp]
          Length = 347

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 209/325 (64%), Positives = 268/325 (82%), Gaps = 2/325 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI++ +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKRALAAALGQIEKQFGKGAVMRMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAEAQKNGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS A+D+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAIDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR G++K+ + + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGAVKEGEEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PF+Q EF I+YG+GI   GE+IDLGV+  +V+KSGAW+S++G ++GQG+
Sbjct: 242 RVKIVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVQQGLVEKSGAWYSYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
            N+  FL +N  +A  IE  +R+  
Sbjct: 302 ANAAKFLEDNPAVAREIEGQIREKL 326


>gi|2460018|gb|AAC38154.1| RecA [Xanthomonas oryzae pv. oryzae]
          Length = 344

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 218/352 (61%), Positives = 282/352 (80%), Gaps = 13/352 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AALSQI++ +GKG++M++G    + E +EV+ +GSL LDIALG GG PKGR+V
Sbjct: 4   NKKRALAAALSQIEKQFGKGSVMRMGD--RVIEAVEVIPTGSLMLDIALGTGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK GGT AF+DAEHALD +YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAQCQKLGGTAAFIDAEHALDPVYAAKLGVNVDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS +VDI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSSSVDIVVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  ++VFINQ+RMKIGVM    SPE TTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 182 KRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELID+ V+A +V+K+GAW+S+  +R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMAVEAKLVEKAGAWYSYGDERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           G++N++ +LR+N ++A  +E+ LR+           +PA   ++  D ++ +
Sbjct: 302 GKDNARTYLRDNPQVAVRLEAELREKF---------QPAEAPREAGDDEEKE 344


>gi|294650666|ref|ZP_06728020.1| recombination protein A [Acinetobacter haemolyticus ATCC 19194]
 gi|292823457|gb|EFF82306.1| recombination protein A [Acinetobacter haemolyticus ATCC 19194]
          Length = 347

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 225/353 (63%), Positives = 280/353 (79%), Gaps = 10/353 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL+AALSQI++ +GK  +M+LG      + +E VS+GSL LDIALGIGG PKGRI+
Sbjct: 4   NKSKALQAALSQIEKQFGKNTVMRLGDNT--VQAVEAVSTGSLTLDIALGIGGLPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ L  IAQ QKTGGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD G
Sbjct: 62  EIYGPESSGKTTMTLQAIAQCQKTGGTCAFIDAEHALDPEYARKLGVDIDNLLVSQPDNG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T + 
Sbjct: 122 EQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNA 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+ D ITGN+T
Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEGDEITGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFK+  F IMYG+G +  GEL+DL V+  IV K+GAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKMAPPFKEAVFQIMYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N      EN ++A+ IE L+R+         L     N     ++D+ D +E
Sbjct: 302 NNVIRHFEENPQMAQEIEKLIREQ--------LLTKNSNEAAAVEEDELDLLE 346


>gi|291614563|ref|YP_003524720.1| recA protein [Sideroxydans lithotrophicus ES-1]
 gi|291584675|gb|ADE12333.1| recA protein [Sideroxydans lithotrophicus ES-1]
          Length = 341

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 217/329 (65%), Positives = 279/329 (84%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AALSQI++ +GKG+IM+LG    + + I+VVS+GSLGLDIALG+GG P+GR++
Sbjct: 4   NKSKALAAALSQIEKQFGKGSIMRLGE-SEVGKDIQVVSTGSLGLDIALGVGGLPRGRVI 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA+KLGV +++LLISQPD G
Sbjct: 63  EIYGPESSGKTTLTLQVIAEMQKMGGTAAFIDAEHALDPGYAKKLGVKVEDLLISQPDNG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VD++V+DSVAALTP+AEIEG+MG++  G+ ARLMSQALRKLT++I
Sbjct: 123 EQALEIVDMLVRSGSVDVVVVDSVAALTPKAEIEGEMGDAQMGLHARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +RS  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIRR G+IK  D + GN+T
Sbjct: 183 NRSNTMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRRTGAIKKGDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK+  FDI+YGEGIS  GE+I+LGV   IV+KSGAW+++ G+++GQG+
Sbjct: 243 RVKVVKNKVAPPFKEANFDILYGEGISREGEIIELGVLHKIVEKSGAWYAYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +N++ FL+ N  IA  IE+ +R   G+ A
Sbjct: 303 DNAREFLKSNPVIAAEIENRVRAAVGVAA 331


>gi|70904877|gb|AAZ14017.1| RecA [Burkholderia cenocepacia]
          Length = 335

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 228/331 (68%), Positives = 284/331 (85%), Gaps = 1/331 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+ I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 2   TAEKSKALAAALAHIEKQFGKGSIMRMGD-GEAKEDIQVVSTGSLGLDIALGVGGLPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 121 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IV K+GAW+S+ G+++GQ
Sbjct: 241 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVYKAGAWYSYNGEKIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           G++N++ FLREN EIA  IE+ +R++ G+ A
Sbjct: 301 GKDNAREFLRENPEIALEIENRIRESXGVAA 331


>gi|308212784|gb|ADO21620.1| RecA [Burkholderia arboris]
          Length = 318

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 222/317 (70%), Positives = 276/317 (87%), Gaps = 1/317 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEQQFGKGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESLLRQNAGLVA 339
           IA  IE+ +R++ G+V+
Sbjct: 300 IAREIENRIRESLGVVS 316


>gi|226953077|ref|ZP_03823541.1| recombinase A [Acinetobacter sp. ATCC 27244]
 gi|226836169|gb|EEH68552.1| recombinase A [Acinetobacter sp. ATCC 27244]
          Length = 347

 Score =  367 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 224/353 (63%), Positives = 280/353 (79%), Gaps = 10/353 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL+AALSQI++ +GK  +M+LG      + +E VS+GSL LDIALGIGG PKGRI+
Sbjct: 4   NKSKALQAALSQIEKQFGKNTVMRLGDNT--VQAVEAVSTGSLTLDIALGIGGLPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ L  IAQ QKTGGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD G
Sbjct: 62  EIYGPESSGKTTMTLQAIAQCQKTGGTCAFIDAEHALDPEYARKLGVDIDNLLVSQPDNG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T + 
Sbjct: 122 EQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNA 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+ D ITGN+T
Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEGDEITGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFK+  F IMYG+G +  GEL+DL V+  IV K+GAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKMAPPFKEAVFQIMYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N      EN ++A+ IE L+R+      +        N     ++D+ D +E
Sbjct: 302 NNVIRHFEENPQMAQEIEKLIREQLLTKNN--------NEAAAVEEDELDLLE 346


>gi|315640316|ref|ZP_07895433.1| recombination protein A [Enterococcus italicus DSM 15952]
 gi|315483978|gb|EFU74457.1| recombination protein A [Enterococcus italicus DSM 15952]
          Length = 347

 Score =  367 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 199/346 (57%), Positives = 268/346 (77%), Gaps = 2/346 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ +GKGA+M+LG +  + + I  + SGSL LD+ALG+GG+P+GRIV
Sbjct: 4   DRKAALDAALKRIEKNFGKGAVMKLGEK--VDQKISTIPSGSLALDVALGVGGYPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+ LGV++ +LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQNLGVNIDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+VIDSVAAL PRAEI+G+MG++  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVIDSVAALVPRAEIDGEMGDTHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKSGTDIIGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYGEGIS  GEL+D+  +  I+DKSGAW+S+KG R+GQGR
Sbjct: 242 KIKVVKNKVAPPFRIAEVDIMYGEGISQVGELLDMAAEMDIIDKSGAWYSYKGDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           EN K +++E+ E+   + + +R   G+ +   + E A       D+
Sbjct: 302 ENVKSYMKEHPEMVAEVSARVRDAYGIGSGETIAEDAQEELQLDDE 347


>gi|331003604|ref|ZP_08327100.1| RecA protein [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330412324|gb|EGG91716.1| RecA protein [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 389

 Score =  367 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 209/357 (58%), Positives = 280/357 (78%), Gaps = 1/357 (0%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           +K M   +K  ALE+AL+QI++ YGKG++M+LG + +    +E + +GSLGLDIALG+GG
Sbjct: 14  KKVMEKSEKQAALESALTQIEKAYGKGSVMKLGDENTHM-HVETIPTGSLGLDIALGVGG 72

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            PKGRI+E+YGPESSGKTT+ALH +A++QK GG  AF+DAEHALD  YA K+GV++  L 
Sbjct: 73  IPKGRIIEVYGPESSGKTTVALHMVAEAQKLGGIAAFIDAEHALDPAYAEKIGVNINELY 132

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPD GEQALEIT+ +VRSGAVDII++DSVAAL P+ EIEGDMG+S  G+QARLMSQ L
Sbjct: 133 VSQPDNGEQALEITETMVRSGAVDIIIVDSVAALVPKGEIEGDMGDSHMGLQARLMSQGL 192

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT  +S+S CI++FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+R+V  IK   
Sbjct: 193 RKLTGIVSKSNCIVIFINQLRDKIGVMFGSPETTTGGRALKFYASVRLDVRKVEQIKQGG 252

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + G +TR+KVVKNK+A PFK+ EFDIMYG GIS  GE++DL V + ++DK GAW+S++G
Sbjct: 253 ELIGTKTRIKVVKNKVAPPFKEAEFDIMYGLGISKSGEILDLAVASDVIDKGGAWYSYEG 312

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
            ++GQGREN+K FL +N EI + IE  +R+     +++  ++   ++ DD + ++ D
Sbjct: 313 NKIGQGRENAKKFLMDNPEICKKIEEQVRETFKTTSENDDKQIEYDSVDDVEDEEFD 369


>gi|261206641|ref|ZP_05921339.1| recA [Enterococcus faecium TC 6]
 gi|289565002|ref|ZP_06445456.1| recombinase A [Enterococcus faecium D344SRF]
 gi|294614940|ref|ZP_06694831.1| protein RecA [Enterococcus faecium E1636]
 gi|260079134|gb|EEW66827.1| recA [Enterococcus faecium TC 6]
 gi|289163209|gb|EFD11055.1| recombinase A [Enterococcus faecium D344SRF]
 gi|291592226|gb|EFF23844.1| protein RecA [Enterococcus faecium E1636]
          Length = 348

 Score =  367 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 200/342 (58%), Positives = 267/342 (78%), Gaps = 2/342 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ YGKG+IM+LG +  I + I  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKAALDAALKKIEKSYGKGSIMKLGEK--IDQQISTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+V+DSVAAL PRAEI+G+MG+S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E D+MYG GIS  GEL+D+ V+  IVDKSGAW+S+K  R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKIAEVDVMYGLGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           EN+KI++  + E+   + +L+R   G+  +  + E     ++
Sbjct: 302 ENAKIYMANHPEMMAEVSALVRAAYGIGEEVAVPEDEKGQEE 343


>gi|167855856|ref|ZP_02478607.1| recombinase A [Haemophilus parasuis 29755]
 gi|167853006|gb|EDS24269.1| recombinase A [Haemophilus parasuis 29755]
          Length = 372

 Score =  367 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 222/359 (61%), Positives = 282/359 (78%), Gaps = 2/359 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K++    K +AL+AAL+QI++ +GKG+IM+LG    +   IE VS+GSLGLD+ALGIGG 
Sbjct: 15  KQVPPEQKQQALDAALAQIEKQFGKGSIMKLGQTEQL--DIESVSTGSLGLDLALGIGGL 72

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P GRIVEIYGPESSGKTTL L  IAQ+QK   TCAF+DAEHALD +YAR LGV+   LLI
Sbjct: 73  PMGRIVEIYGPESSGKTTLTLSLIAQAQKGNKTCAFIDAEHALDPVYARNLGVNTDELLI 132

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALR
Sbjct: 133 SQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALR 192

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT++I  + C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G +KD D 
Sbjct: 193 KLTANIKNTNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRCGVVKDGDE 252

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           I G++T+VKVVKNK+A PF++V+FDIMYGEGIS   EL+ L      + KSGAWFS+ G 
Sbjct: 253 IIGSETKVKVVKNKVAPPFREVQFDIMYGEGISRMNELLILAEANGFIKKSGAWFSYDGT 312

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           ++GQG+ N+  +L+EN EIA+ +E  +R       +S+L+  A ++ D++D ++    E
Sbjct: 313 KIGQGKNNAVKWLKENPEIADKLEQEIRNTLASNPNSVLKATASDSNDESDVEEFSEEE 371


>gi|319779603|ref|YP_004130516.1| RecA protein [Taylorella equigenitalis MCE9]
 gi|317109627|gb|ADU92373.1| RecA protein [Taylorella equigenitalis MCE9]
          Length = 356

 Score =  367 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 220/333 (66%), Positives = 275/333 (82%), Gaps = 1/333 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+ G    +   I+V S+GSL LDIALG+GG P+GR++EI+GPESSGKT
Sbjct: 19  QIEKQFGKGSIMRYGD-SEVEHDIQVFSTGSLSLDIALGVGGLPRGRVIEIFGPESSGKT 77

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGTCAF+DAEHALD  YA KLGV+L  LLISQPD+GEQALEITD LV
Sbjct: 78  TLTLQAIAEMQKLGGTCAFIDAEHALDVQYAAKLGVNLDELLISQPDSGEQALEITDALV 137

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG++D+IV+DSVAAL P+AE+EGDMG+SLPG+QARLMSQALRKLT+SI R+ C ++FIN
Sbjct: 138 RSGSIDLIVVDSVAALVPKAELEGDMGDSLPGLQARLMSQALRKLTASIKRTNCTVIFIN 197

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A 
Sbjct: 198 QIRMKIGVMFGSPETTTGGNALKFYTSVRLDIRRIGSIKKGDEVIGNETRVKVVKNKVAP 257

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PFKQVEFDIMYG GIS  GE+IDLGVKA IVDK+G+WFS+ G ++GQG++N + +L+ N 
Sbjct: 258 PFKQVEFDIMYGTGISREGEIIDLGVKAGIVDKAGSWFSYNGNKIGQGKDNVREYLKSNP 317

Query: 322 EIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           E+A+ IE  +R+  G+    +  + + +  DD 
Sbjct: 318 ELAQEIEGKIREAMGVGGSDIFTDMSHSDSDDE 350


>gi|188025341|ref|ZP_02958304.2| hypothetical protein PROSTU_00007 [Providencia stuartii ATCC 25827]
 gi|188023876|gb|EDU61916.1| hypothetical protein PROSTU_00007 [Providencia stuartii ATCC 25827]
          Length = 366

 Score =  367 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 209/323 (64%), Positives = 271/323 (83%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P GRIV
Sbjct: 17  NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDVALGAGGLPLGRIV 74

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q++G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 75  EIYGPESSGKTTLTLQVIAAAQRSGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 134

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 135 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 194

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ + I G++T
Sbjct: 195 KNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKNGEEIVGSET 254

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+ +GELIDLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 255 RVKVVKNKVAAPFKQAEFQILYGEGINTYGELIDLGVKHKLIEKAGAWYSYNGDKIGQGK 314

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  +L+E+ EIAE ++  LR+
Sbjct: 315 ANATTYLKEHREIAEELDKKLRE 337


>gi|28493578|ref|NP_787739.1| recombinase A [Tropheryma whipplei str. Twist]
 gi|28476620|gb|AAO44708.1| recombinase A [Tropheryma whipplei str. Twist]
          Length = 447

 Score =  367 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 198/344 (57%), Positives = 257/344 (74%), Gaps = 2/344 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           + +++++ALE AL+ I R YGKGA+M++      +  I+V+ +GS+ LD ALG+GG P+G
Sbjct: 15  DQINRTRALELALANIDRQYGKGAVMRMNDAQKAY--IDVIPTGSIALDYALGVGGLPRG 72

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTL LH IA  Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQP
Sbjct: 73  RIVEIYGPESSGKTTLTLHAIASVQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQP 132

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D+GEQALEI+DML+RS A+D+IVIDSVAAL PRAE+EGDMG+   G+QARLMSQALRK+T
Sbjct: 133 DSGEQALEISDMLIRSTAIDLIVIDSVAALVPRAELEGDMGDMHVGLQARLMSQALRKIT 192

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           S ++++    +FINQ+R K+GV FGSPETT GG ALKFY+SVRLDIRRV +IK      G
Sbjct: 193 SGLNQTGTTAIFINQLREKVGVFFGSPETTPGGRALKFYASVRLDIRRVETIKQGTEAVG 252

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+TRVKVVKNK+A PFKQ EFD++YG GIS    LID  V   I+ KSG+W+ +   +LG
Sbjct: 253 NRTRVKVVKNKVAPPFKQAEFDVLYGVGISRESGLIDFAVDRGIIKKSGSWYVYGDDQLG 312

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           QG+EN++ FL EN  +A+ IE+ +    G  ++     P  +  
Sbjct: 313 QGKENARRFLLENKSVADEIENKIISLLGFRSNEFGDLPDHDAA 356


>gi|163846932|ref|YP_001634976.1| recombinase A [Chloroflexus aurantiacus J-10-fl]
 gi|222524755|ref|YP_002569226.1| recombinase A [Chloroflexus sp. Y-400-fl]
 gi|172045669|sp|O52394|RECA_CHLAA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|254790428|sp|B9LCN0|RECA_CHLSY RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|163668221|gb|ABY34587.1| recA protein [Chloroflexus aurantiacus J-10-fl]
 gi|222448634|gb|ACM52900.1| recA protein [Chloroflexus sp. Y-400-fl]
          Length = 351

 Score =  367 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 208/345 (60%), Positives = 269/345 (77%), Gaps = 3/345 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +K KAL A ++QI R +GKG+IM++G   S    IE + +GS+ LDIALGIGG P+GR
Sbjct: 4   TPEKEKALAATMAQIDRKFGKGSIMKMGEASSRL-AIEAIPTGSIALDIALGIGGVPRGR 62

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEI+GPESSGKTTLA H IA++QK GG CAF+DAEHA D +YA + GV++ +LL+SQPD
Sbjct: 63  VVEIFGPESSGKTTLAQHIIAEAQKMGGVCAFIDAEHAFDPVYAARCGVNIDDLLVSQPD 122

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI +MLVRS A+D+IVIDSVAAL PRAEIEG+MG+S+PGMQARLMSQALRKL+ 
Sbjct: 123 TGEQALEICEMLVRSNAIDVIVIDSVAALVPRAEIEGEMGDSMPGMQARLMSQALRKLSG 182

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +IS+S+ +++FINQ+RMKIGVMFGSPETTTGG ALKFY+SVRLDIRRV ++K      G+
Sbjct: 183 AISKSRTVVIFINQLRMKIGVMFGSPETTTGGQALKFYASVRLDIRRVETLKQGQEAIGS 242

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + RVKV+KNK+A PF+Q EFDI+  EGIS  G +ID+G +  I+ KSGAWF     RLGQ
Sbjct: 243 RVRVKVIKNKVAPPFRQAEFDILANEGISREGNIIDIGTELGIIRKSGAWFYLGEDRLGQ 302

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           GREN + FL+ N  + + IE L++  A  + +  +  P+++  DD
Sbjct: 303 GRENVREFLKNNPALTDEIERLIKAQA--LTNPTVIAPSVDVGDD 345


>gi|221323088|ref|ZP_03604382.1| recombinase A [Bacillus subtilis subsp. subtilis str. SMY]
          Length = 347

 Score =  367 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 205/335 (61%), Positives = 269/335 (80%), Gaps = 3/335 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG +      I  V SGSL LD ALGIGG+P+GR
Sbjct: 1   MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTR--ISTVPSGSLALDTALGIGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT+ALH IA+ Q+   T AF+DAEHALD +YA+KLGV+++ LL+SQPD
Sbjct: 59  IIEVYGPESSGKTTVALHAIAEVQQQ-RTAAFIDAEHALDPVYAQKLGVNIEELLLSQPD 117

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDI+V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 118 TGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 177

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K  + + GN
Sbjct: 178 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGN 237

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK+A PF+  E DIMYGEGIS  GE+IDLG +  IV KSG+W+S++ +RLGQ
Sbjct: 238 KTKIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQ 297

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343
           GREN+K FL+EN +I   I+  +R++ GL  + ++
Sbjct: 298 GRENAKQFLKENKDIMLMIQEQIREHYGLDNNGVV 332


>gi|304399192|ref|ZP_07381059.1| recA protein [Pantoea sp. aB]
 gi|304353246|gb|EFM17626.1| recA protein [Pantoea sp. aB]
          Length = 356

 Score =  367 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 213/330 (64%), Positives = 273/330 (82%), Gaps = 2/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD++NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIASAQRKGKTCAFIDAEHALDPVYAKKLGVDIENLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+ FGEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQIMYGEGINTFGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
            N+  FL+EN  +A  I+  LR+     AD
Sbjct: 304 SNAGNFLKENAAVANEIDLKLREMLLNGAD 333


>gi|331007036|ref|ZP_08330270.1| RecA protein [gamma proteobacterium IMCC1989]
 gi|330419163|gb|EGG93595.1| RecA protein [gamma proteobacterium IMCC1989]
          Length = 377

 Score =  367 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 223/350 (63%), Positives = 279/350 (79%), Gaps = 3/350 (0%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
            K M+  +K KALEAALSQI+R +GKG +M++G +  +   I  +S+GSLGLDIALGIGG
Sbjct: 27  EKNMD-SNKDKALEAALSQIERQFGKGTVMRMGDKELV--KIPAISTGSLGLDIALGIGG 83

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            PKGRI EIYGPESSGKTTL L  IA++QK GGTCAF+DAEHALD +YA KLGV++ +L+
Sbjct: 84  LPKGRIAEIYGPESSGKTTLTLQVIAEAQKQGGTCAFIDAEHALDPVYAEKLGVNVDDLI 143

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           ISQPDTGEQALE+ DMLVRSGAVD+IVIDSVAALTP+AEIEGDMG+   G+QARLMSQAL
Sbjct: 144 ISQPDTGEQALEVADMLVRSGAVDVIVIDSVAALTPKAEIEGDMGDHHVGLQARLMSQAL 203

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RK+T +I  + C+ +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G++K+ +
Sbjct: 204 RKITGNIKNANCLCIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAVKEGE 263

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            I G++TRVKVVKNK+A PFKQ EF IMYG GI+  GE+ID GVK  ++DK+GAW+S+KG
Sbjct: 264 DIVGSETRVKVVKNKVAPPFKQTEFQIMYGRGINRLGEVIDYGVKLELIDKAGAWYSYKG 323

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           +++GQG+ N   FL+E  EIAE +E  +R+           +  +    D
Sbjct: 324 EKIGQGKNNVIKFLQERPEIAEEVELAIRREFLPDTVEGAADNVVEITAD 373


>gi|47600762|emb|CAG26667.1| recombinase A [Lactobacillus plantarum subsp. argentoratensis]
 gi|47600764|emb|CAG26668.1| recombinase A [Lactobacillus plantarum subsp. argentoratensis]
          Length = 380

 Score =  367 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 193/342 (56%), Positives = 260/342 (76%), Gaps = 2/342 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL +I++ +GKGAIM++G        I  +SSGSL LD ALG+GG+P+GRIVE
Sbjct: 5   RKAALDTALKKIEKNFGKGAIMRMGDAAQTT--ISTISSGSLALDDALGVGGYPRGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGE
Sbjct: 63  IYGPESSGKTTVALHAVAEVQKQGGTAAYIDAENALDPVYAEHLGVNIDDLLLSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q LEI D LV SGAVDI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +++
Sbjct: 123 QGLEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTLN 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++K I +FINQ+R K+GVMFG+PETT GG ALKFY+++RL++RR   IK+  +I GN+ R
Sbjct: 183 KTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATIRLEVRRAEQIKEGTNIIGNRVR 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           +KVVKNK+A PFK+ E DIMYG+GIS  GE++D+  +  IV KSG+W+S+   R+GQGRE
Sbjct: 243 IKVVKNKVAPPFKRAEVDIMYGQGISQTGEIVDMAAEKDIVKKSGSWYSYGDDRIGQGRE 302

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           N+K +L E+ ++   I   +R   G+ A       A +   D
Sbjct: 303 NAKKYLDEHPDVMTEIRQKVRDAYGMDATGEEATEADDQAKD 344


>gi|65306697|gb|AAY41901.1| RecA [Mycobacterium phocaicum]
          Length = 350

 Score =  367 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 198/316 (62%), Positives = 257/316 (81%), Gaps = 2/316 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE AL+QI + +GKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 6   PDREKALELALAQIDKSFGKGSVMRLGEETR--QPISVIPTGSIALDVALGIGGLPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EI+GPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD   LL+SQPDT
Sbjct: 64  IEIFGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 124 GEQALEIADMLVRSGAIDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+
Sbjct: 184 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVK+VKNK+A PFKQ EFDI+YG GIS  G LID+GV+   + KSG+WF++ G++LGQG
Sbjct: 244 TRVKIVKNKVAPPFKQAEFDILYGRGISREGSLIDMGVEHGFIRKSGSWFTYDGEQLGQG 303

Query: 310 RENSKIFLRENIEIAE 325
           +EN++ +L +N++ A 
Sbjct: 304 KENARNYLLQNVDAAN 319


>gi|330807842|ref|YP_004352304.1| recombinase A [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327375950|gb|AEA67300.1| recombinase A [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 350

 Score =  367 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 221/348 (63%), Positives = 272/348 (78%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI+R +GKGA+M++G Q    + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKKALAAALGQIERQFGKGAVMRMGDQDR--QAIPSISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAQAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+ASPF+Q EF I+YG+GI   GE+IDLGV    V+KSGAW+++ G ++GQG+
Sbjct: 242 RVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGTKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            NS  FL +N E+A  +E  LR         +       T DD    D
Sbjct: 302 ANSAKFLADNPEVAAALEKQLRDKLLSPVADVKSVANRETADDLADAD 349


>gi|224551713|gb|ACN54256.1| RecA [Burkholderia sp. MVP-C2-48]
          Length = 319

 Score =  367 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 221/317 (69%), Positives = 276/317 (87%), Gaps = 1/317 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESLLRQNAGLVA 339
           IA  IE+ +R++ G+V+
Sbjct: 300 IAREIENRIRESLGVVS 316


>gi|310827659|ref|YP_003960016.1| recA protein [Eubacterium limosum KIST612]
 gi|308739393|gb|ADO37053.1| recA protein [Eubacterium limosum KIST612]
          Length = 386

 Score =  366 bits (940), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 201/362 (55%), Positives = 273/362 (75%), Gaps = 3/362 (0%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
            ++ +   K +AL AAL  I++ +GKGA+M+LG + +    ++V+S+ S+G+D+ALGIGG
Sbjct: 12  EEKTDNSAKQEALNAALKNIEKTFGKGAVMRLGDESAKM-DVDVISTSSIGIDMALGIGG 70

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P+GRI+EIYGPESSGKTT+ALH +A++QK GG  AF+DAEHALD +YA+ LGVD+ NL+
Sbjct: 71  VPRGRIIEIYGPESSGKTTIALHIVAEAQKAGGNAAFIDAEHALDPVYAKALGVDVDNLI 130

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPDTGEQALEI + LVRSGA+D+ V+DSVAAL PRAEI+G+MG+S  G+QARLMSQAL
Sbjct: 131 VSQPDTGEQALEILEALVRSGAIDVAVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQAL 190

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKL   I +S    +FINQ+R K+GVM+G+PE TTGG ALKFYSSVR+DIRR+ ++K   
Sbjct: 191 RKLAGIIKKSNTAAIFINQLREKVGVMYGNPEVTTGGRALKFYSSVRMDIRRIETLKKGT 250

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+TR K+VKNKMA PFK  EFDIMYGEGIS  G+++D+ V+ +I+ KSG+WFS+  
Sbjct: 251 DMIGNRTRAKIVKNKMAPPFKTAEFDIMYGEGISREGDILDMAVELNIIKKSGSWFSYGE 310

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN--TKDDADKDDTDN 361
           +RLGQGR+  K +L+EN E A+ +E  +R +     +  + E      TKD A+     +
Sbjct: 311 ERLGQGRDKVKEYLKENPEFADAVEQKIRDHFAKKDEPEVPEEGSEALTKDQAEMAAELS 370

Query: 362 VE 363
            E
Sbjct: 371 DE 372


>gi|307546335|ref|YP_003898814.1| recombinase A [Halomonas elongata DSM 2581]
 gi|307218359|emb|CBV43629.1| recombinase A [Halomonas elongata DSM 2581]
          Length = 356

 Score =  366 bits (940), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 217/325 (66%), Positives = 266/325 (81%), Gaps = 2/325 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++SKAL AALSQI R +GKG +M+LG    +   +  VS+GSLGLDIALGIGG P GR+V
Sbjct: 6   NRSKALNAALSQIDRQFGKGTVMRLGDTPRV--AMPSVSTGSLGLDIALGIGGLPYGRVV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA++QK G TCAF+DAEHALD  YA KLGV+L +LL+SQPDTG
Sbjct: 64  EIFGPESSGKTTLTLAVIAEAQKQGKTCAFIDAEHALDPSYAEKLGVNLDDLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG VD+I+IDSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T  +
Sbjct: 124 EQALEICDMLVRSGGVDVIIIDSVAALTPRAEIEGEMGDSHVGLQARLMSQALRKVTGHM 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR GS+K  D + GN+T
Sbjct: 184 KNANCMVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSVKQGDEVVGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE++DLGV+  +VDK+GAW+S++G ++GQG+
Sbjct: 244 RVKVVKNKVAPPFRQAEFQILYGKGIYHAGEVVDLGVQCGLVDKAGAWYSYQGNKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
            N+  FL +N  + E IES +R   
Sbjct: 304 ANAAQFLEDNPAVMEEIESQIRAQL 328


>gi|157326925|gb|ABV44575.1| RecA [Burkholderia cenocepacia]
          Length = 322

 Score =  366 bits (940), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 220/317 (69%), Positives = 276/317 (87%), Gaps = 1/317 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IV+K+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVEKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESLLRQNAGLVA 339
           IA  IE+ +R++ G+V+
Sbjct: 300 IARQIENRIRESLGVVS 316


>gi|170693424|ref|ZP_02884583.1| recA protein [Burkholderia graminis C4D1M]
 gi|170141579|gb|EDT09748.1| recA protein [Burkholderia graminis C4D1M]
          Length = 357

 Score =  366 bits (940), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 229/347 (65%), Positives = 291/347 (83%), Gaps = 1/347 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG++M+LG  G + E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 12  TAEKSKALAAALAQIEKQFGKGSVMRLG-AGEVVEDIQVVSTGSLGLDIALGVGGLPRGR 70

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPD
Sbjct: 71  VVEIYGPESSGKTTLTLQVIAEMQKIGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPD 130

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 131 TGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 190

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 191 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 250

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQ
Sbjct: 251 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYSGERIGQ 310

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           G++N++ FLREN +IA  IE+ +R++ G+ A +     A     D +
Sbjct: 311 GKDNAREFLRENPDIAREIENRIRESLGVNAMAEAVTGAGAEVADEE 357


>gi|81428101|ref|YP_395100.1| recombinase A [Lactobacillus sakei subsp. sakei 23K]
 gi|123728671|sp|Q38YD9|RECA_LACSS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|78609742|emb|CAI54788.1| DNA recombinase A [Lactobacillus sakei subsp. sakei 23K]
          Length = 355

 Score =  366 bits (940), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 191/345 (55%), Positives = 264/345 (76%), Gaps = 2/345 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   ++  AL+AAL +I++ +GKG+IM++G +  +   +  VSSGSL LD ALG+GG+P+
Sbjct: 1   MAKDERQAALDAALKKIEKNFGKGSIMRMGEK--VDTQVSTVSSGSLALDEALGVGGYPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGV++ +LL+SQ
Sbjct: 59  GRIVEIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAENAMDPKYATALGVNIDDLLLSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL
Sbjct: 119 PDTGEQGLEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + +I+++K I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR  +IK+   + 
Sbjct: 179 SGTINKTKTIALFINQIREKVGVMFGNPEVTPGGRALKFYSTVRLEVRRAETIKNGTDMI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ R+KVVKNK+A PFK  E DIMYG+GIS  GEL+D+ V+  I++KSG+W+S+  +R+
Sbjct: 239 GNRARIKVVKNKVAPPFKVAEVDIMYGQGISRTGELVDMAVEKDIINKSGSWYSYGSERI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           GQGREN+K +L ++ ++ + +   +R   G+        P    +
Sbjct: 299 GQGRENAKNYLADHEDVEDEVRLKVRAAYGISDVPEEDLPTTEDE 343


>gi|84624450|ref|YP_451822.1| recombinase A [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188575921|ref|YP_001912850.1| recombinase A [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|62296941|sp|O30633|RECA_XANOR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123739085|sp|Q2P1M9|RECA_XANOM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238689464|sp|B2SUC8|RECA_XANOP RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|15150329|gb|AAK85395.1|AF399932_2 RecA [Xanthomonas oryzae]
 gi|84368390|dbj|BAE69548.1| RecA protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188520373|gb|ACD58318.1| protein RecA [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 344

 Score =  366 bits (940), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 219/352 (62%), Positives = 283/352 (80%), Gaps = 13/352 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AALSQI++ +GKG++M++G    + E +EV+ +GSL LDIALG GG PKGR+V
Sbjct: 4   NKKRALAAALSQIEKQFGKGSVMRMGD--RVIEAVEVIPTGSLMLDIALGTGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK GGT AF+DAEHALD +YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAQCQKLGGTAAFIDAEHALDPVYAAKLGVNVDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS +VDI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSSSVDIVVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  ++VFINQ+RMKIGVM    SPE TTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 182 KRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELID+GV+A +V+K+GAW+S+  +R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVEKAGAWYSYGDERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           G++N++ +LR+N ++A  +E+ LR+           +PA   ++  D ++ +
Sbjct: 302 GKDNARTYLRDNPQVAVRLEAELREKF---------QPAEAPREAGDDEEKE 344


>gi|308212792|gb|ADO21624.1| RecA [Burkholderia arboris]
          Length = 317

 Score =  366 bits (940), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 221/316 (69%), Positives = 275/316 (87%), Gaps = 1/316 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI
Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299

Query: 324 AENIESLLRQNAGLVA 339
           A  IE+ +R++ G+V+
Sbjct: 300 AREIENRIRESLGVVS 315


>gi|39995256|ref|NP_951207.1| recombinase A [Geobacter sulfurreducens PCA]
 gi|50403565|sp|P62215|RECA_GEOSL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|39982018|gb|AAR33480.1| recA protein [Geobacter sulfurreducens PCA]
 gi|298504261|gb|ADI82984.1| recombinase A [Geobacter sulfurreducens KN400]
          Length = 338

 Score =  366 bits (940), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 216/336 (64%), Positives = 270/336 (80%), Gaps = 1/336 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             ++ KA+E ALSQI++ +GKGAIM+LG+       +  + +GSL LD+ALG+GG P+GR
Sbjct: 2   TQEREKAIELALSQIEKQFGKGAIMRLGAD-EALPDVAAIPTGSLSLDLALGVGGVPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTTLALH  A++QK GG  AFVDAEHALD  YARKLGV   +LL+SQPD
Sbjct: 61  IIEIYGPESSGKTTLALHIAAEAQKMGGIAAFVDAEHALDIGYARKLGVKTDDLLVSQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI +MLVRSGAVD++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT 
Sbjct: 121 TGEQALEIAEMLVRSGAVDVLVIDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            IS+S C ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIR++ S+K    + G+
Sbjct: 181 IISKSNCCVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRKIASLKQGQDVIGS 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T+VKVVKNK+A PFK+VEFDI YGEGIS  G+++DL V+  IVDKSGAWFS+ G R+GQ
Sbjct: 241 RTKVKVVKNKVAPPFKEVEFDIYYGEGISREGDILDLAVEKGIVDKSGAWFSYGGDRIGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
           GRENS++FL+E  E+   IE  +   AG+      +
Sbjct: 301 GRENSRLFLKERPELVNEIEGKVYDVAGIPRKGAKE 336


>gi|28572774|ref|NP_789554.1| recombinase A [Tropheryma whipplei TW08/27]
 gi|54039034|sp|P65982|RECA_TROW8 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|54041794|sp|P65981|RECA_TROWT RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|28410907|emb|CAD67292.1| recombinase A [Tropheryma whipplei TW08/27]
          Length = 437

 Score =  366 bits (940), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 198/344 (57%), Positives = 257/344 (74%), Gaps = 2/344 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           + +++++ALE AL+ I R YGKGA+M++      +  I+V+ +GS+ LD ALG+GG P+G
Sbjct: 5   DQINRTRALELALANIDRQYGKGAVMRMNDAQKAY--IDVIPTGSIALDYALGVGGLPRG 62

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTL LH IA  Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQP
Sbjct: 63  RIVEIYGPESSGKTTLTLHAIASVQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQP 122

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D+GEQALEI+DML+RS A+D+IVIDSVAAL PRAE+EGDMG+   G+QARLMSQALRK+T
Sbjct: 123 DSGEQALEISDMLIRSTAIDLIVIDSVAALVPRAELEGDMGDMHVGLQARLMSQALRKIT 182

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           S ++++    +FINQ+R K+GV FGSPETT GG ALKFY+SVRLDIRRV +IK      G
Sbjct: 183 SGLNQTGTTAIFINQLREKVGVFFGSPETTPGGRALKFYASVRLDIRRVETIKQGTEAVG 242

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+TRVKVVKNK+A PFKQ EFD++YG GIS    LID  V   I+ KSG+W+ +   +LG
Sbjct: 243 NRTRVKVVKNKVAPPFKQAEFDVLYGVGISRESGLIDFAVDRGIIKKSGSWYVYGDDQLG 302

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           QG+EN++ FL EN  +A+ IE+ +    G  ++     P  +  
Sbjct: 303 QGKENARRFLLENKSVADEIENKIISLLGFRSNEFGDLPDHDAA 346


>gi|306450653|gb|ADM88579.1| RecA [Propionibacterium acnes]
          Length = 319

 Score =  366 bits (940), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 204/318 (64%), Positives = 256/318 (80%), Gaps = 2/318 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+ KAL  AL QI++ +GKG+IM+LG Q ++   I  + +GS+ LD+ALG+GG P+GR
Sbjct: 4   TADREKALATALQQIEKQHGKGSIMRLGEQETV--KIAAIPTGSVALDVALGVGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEIYGPESSGKTT+ALH IA +Q  GG CAF+DAEHALD  YARKLGVD  +LL+SQPD
Sbjct: 62  IVEIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPEYARKLGVDTDSLLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GEQALEI D LVRSGA+++IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T 
Sbjct: 122 NGEQALEIADTLVRSGALELIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +++ +    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RRV ++KD   + GN
Sbjct: 182 ALNAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRVETLKDGSEMVGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKV KNK+A PFKQ EFDI+YG+GIS  G LID+GV   I+ KSG+WFS+  ++LGQ
Sbjct: 242 RTRVKVAKNKVAPPFKQAEFDILYGQGISREGSLIDMGVDCGIITKSGSWFSYNNEQLGQ 301

Query: 309 GRENSKIFLRENIEIAEN 326
           G+EN + FLR N ++A  
Sbjct: 302 GKENVRKFLRGNPDVANE 319


>gi|317050275|ref|YP_004111391.1| recA protein [Desulfurispirillum indicum S5]
 gi|316945359|gb|ADU64835.1| recA protein [Desulfurispirillum indicum S5]
          Length = 357

 Score =  366 bits (940), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 205/346 (59%), Positives = 274/346 (79%), Gaps = 2/346 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + +K KALE A++QI++ +GKG+IM+LGS       I VV SG+L LDIALG+GG+P+GR
Sbjct: 1   MSEKQKALELAIAQIEKAHGKGSIMRLGSGE--IPAIPVVPSGNLALDIALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EIYGPESSGKTTL+LH IA++QK GGT AF+DAE+A D++YARK+G++ + LL+SQPD
Sbjct: 59  VIEIYGPESSGKTTLSLHAIAEAQKMGGTAAFIDAENAFDAMYARKIGINTEALLVSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GE ALEI D LVRSGA+D+IVIDSVAAL P+AE+EG+MGE+  G QARLMSQALRKLT 
Sbjct: 119 YGESALEIADTLVRSGAIDVIVIDSVAALVPKAELEGEMGEATMGAQARLMSQALRKLTG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++S  +++FINQ+R KIGVMFG+PETTTGGNALKFY+S+RLDIRR+ SIK+   +TGN
Sbjct: 179 AINKSHTVVIFINQIRSKIGVMFGNPETTTGGNALKFYASMRLDIRRIASIKEGTDVTGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + RVKVVKNK+A PFK+ EFDI +GEGIS  G +ID+     I+ KSG+W+S+ G+R+GQ
Sbjct: 239 RARVKVVKNKVAPPFKEAEFDITFGEGISSIGTIIDMATDYDILGKSGSWYSYNGERIGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           GREN K +L+E+ E+ + +E  +++  GL+       P    +  A
Sbjct: 299 GRENVKTYLKEHPEVTKELERKVKEKVGLIPVLEDDAPQAKEEPAA 344


>gi|187925268|ref|YP_001896910.1| recombinase A [Burkholderia phytofirmans PsJN]
 gi|187716462|gb|ACD17686.1| recA protein [Burkholderia phytofirmans PsJN]
          Length = 358

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 227/331 (68%), Positives = 285/331 (86%), Gaps = 1/331 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG++M+LG  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 12  TAEKSKALAAALAQIEKQFGKGSVMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLPRGR 70

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LL+SQPD
Sbjct: 71  VVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNELLVSQPD 130

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 131 TGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 190

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN
Sbjct: 191 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 250

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQ
Sbjct: 251 ETRVKVVKNKVAPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYSGERIGQ 310

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           G++N++ FLREN +IA  IE+ +R++ G+ A
Sbjct: 311 GKDNAREFLRENPDIAREIENRIRESLGVNA 341


>gi|296837395|gb|ADH59556.1| DNA recombinase [Burkholderia stabilis]
 gi|296837397|gb|ADH59557.1| DNA recombinase [Burkholderia contaminans]
          Length = 322

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 219/317 (69%), Positives = 275/317 (86%), Gaps = 1/317 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+V+IYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVQIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDL V+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLRVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESLLRQNAGLVA 339
           IA  IE+ +R++ G+VA
Sbjct: 300 IAREIENRIRESLGVVA 316


>gi|225936954|emb|CAJ82775.1| recA recombinase [Enterococcus moraviensis]
          Length = 350

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 201/349 (57%), Positives = 268/349 (76%), Gaps = 2/349 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ +GKG++M+LG +  I + I  + SGSL LD+ALG+GG+P+GRIV
Sbjct: 4   DRKVALDAALKKIEKNFGKGSVMKLGEK--IDQQISTIPSGSLALDVALGVGGYPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA  Q+ GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIASVQQQGGTAAFIDAEHALDPQYAQALGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGA+DI+VIDSVAAL PRAEI+G+MG S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAIDIVVIDSVAALVPRAEIDGEMGASHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY++VRL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKQGTDIIGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+ V+  IVDKSGAW+S+K +R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGQGISQEGELLDMAVEKDIVDKSGAWYSYKEERIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           EN K+++ E+ E+ E +   +R   G+   + + E     ++    D+ 
Sbjct: 302 ENVKVYMTEHPEMVEEVSKRVRDAFGIGDGTAVVEEEQAQEELLLDDEE 350


>gi|47600755|emb|CAF21787.1| recombinase A [Lactobacillus paraplantarum]
          Length = 378

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 199/348 (57%), Positives = 262/348 (75%), Gaps = 4/348 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL +I++ +GKGAIM++G        I  +SSGSL LD ALG+GG+P+GRIVE
Sbjct: 5   RKAALDTALKKIEKNFGKGAIMRMGDAAQTT--ISTISSGSLALDDALGVGGYPRGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD IYA  LGV++ +LL+SQPDTGE
Sbjct: 63  IYGPESSGKTTVALHAVAEVQKQGGTAAYIDAENALDPIYAEHLGVNIDDLLLSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q LEI D LV SGAVDI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +++
Sbjct: 123 QGLEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTLN 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++K I +FINQ+R K+GVMFG+PETT GG ALKFY+++RL++RR   IK+  +I GN+ R
Sbjct: 183 KTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATIRLEVRRAEQIKEGTNIIGNRVR 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           +KVVKNK+A PFK+ E DIMYG GIS  GE++D+  +  IV KSG+W+S+   R+GQGRE
Sbjct: 243 IKVVKNKVAPPFKRAEVDIMYGHGISQTGEIVDMAAEKDIVKKSGSWYSYGDDRIGQGRE 302

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           N+K +L E+ +I   I   +R   G+  D    E A  T D A    T
Sbjct: 303 NAKKYLDEHPDIMTEIRQKVRDAYGM--DQTGDEEATETNDQAKDKAT 348


>gi|30249884|ref|NP_841954.1| recombinase A [Nitrosomonas europaea ATCC 19718]
 gi|37537928|sp|Q82TF6|RECA_NITEU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|30180921|emb|CAD85843.1| RecA bacterial DNA recombination protein:AAA ATPase superfamily
           [Nitrosomonas europaea ATCC 19718]
          Length = 343

 Score =  366 bits (939), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 216/341 (63%), Positives = 280/341 (82%), Gaps = 1/341 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K+KAL AAL+QI++ YGKG+IM+LG    + + I+VVS+GSLGLDIALG+GG P+GRI+
Sbjct: 4   NKNKALSAALAQIEKQYGKGSIMRLGD-SDVAKDIQVVSTGSLGLDIALGVGGLPRGRII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA+K+GV+++ LLISQPD G
Sbjct: 63  EIYGPESSGKTTLTLQAIAEMQKLGGTAAFIDAEHALDPQYAQKIGVNVQELLISQPDNG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSG+VD++V+DSVAALTPRAEIEG+MGE   G+QARLMSQALRKLT++I
Sbjct: 123 EQALEITDMLVRSGSVDVVVVDSVAALTPRAEIEGEMGEPQMGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+  +++FINQ+RMKIGV+FG+PETTTGGNALKFY+SVRLDIRR GSIK  + + GN+T
Sbjct: 183 KRTNTMVIFINQIRMKIGVIFGNPETTTGGNALKFYASVRLDIRRTGSIKRGEEMVGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK+A PFKQ +FDI+YGEGIS   E+I+LGV   +++K+GAW+S+ G+++GQG+
Sbjct: 243 RVKIVKNKVAPPFKQADFDILYGEGISRESEIIELGVLHKLIEKAGAWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           +N + +L+E+  IA  IE  +R   GL        P  + +
Sbjct: 303 DNVRDYLKEHKSIAHEIEQKIRAAVGLAETDSRVVPPSSGE 343


>gi|47678148|emb|CAF21837.1| RecA recombinase [Enterococcus pseudoavium]
          Length = 349

 Score =  366 bits (939), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 198/348 (56%), Positives = 268/348 (77%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AA+ +I++ YGKG+IM+LG +  + + I  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKAALDAAMKKIEKNYGKGSIMKLGEK--VDQQISTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA++LGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKHGGTAAFIDAEHALDPQYAQRLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDIIVIDSVAAL PRAEI+G+MG++  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIIVIDSVAALVPRAEIDGEMGDAHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I VFINQ+R K+GVMFG+PE T GG ALKFY++VRL++RR   +K+   I GN+T
Sbjct: 182 NKTKTIAVFINQIREKVGVMFGNPEVTPGGRALKFYATVRLEVRRAEQLKNGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG GIS  GEL+D+ V+  I+DKSGAW+ +K  R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGFGISQEGELLDMAVEQDIIDKSGAWYGYKEDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           EN+K +L ++ E+   + + +R   G+  D    +     +++   ++
Sbjct: 302 ENAKKYLADHPEMMAEVATRVRAAYGIGEDVEAGKAEEAGQEELPLEE 349


>gi|325144735|gb|EGC67030.1| protein RecA [Neisseria meningitidis M01-240013]
          Length = 348

 Score =  366 bits (939), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 223/351 (63%), Positives = 282/351 (80%), Gaps = 6/351 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKSKAL AAL+QI++ +GKGAIM++       E +EV+S+GSLGLD+ALG+GG P+GRIV
Sbjct: 4   DKSKALAAALAQIEKSFGKGAIMKM-DGSQQEENLEVISTGSLGLDLALGVGGLPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  +AQ QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDTG
Sbjct: 63  EIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG VD++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  I
Sbjct: 123 EQALEICDTLVRSGGVDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGHI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR GSIK  + + GN+T
Sbjct: 183 KKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+GVK  I++KSGAW+S+ G ++GQG+
Sbjct: 243 RVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           +N +++L+EN EIA+ I++ +R   G+            T+D+ D +  + 
Sbjct: 303 DNVRVWLKENPEIADEIDAKIRALNGV-----EMHITEGTQDETDGERPEE 348


>gi|225936944|emb|CAJ82768.1| recA recombinase [Enterococcus canis]
          Length = 346

 Score =  366 bits (939), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 202/340 (59%), Positives = 265/340 (77%), Gaps = 2/340 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ +GKG+IM+LG +  + + I V+ SGSL LD+ALG+GG+P+GRIV
Sbjct: 4   DRKVALDAALKKIEKNFGKGSIMKLGEK--VDQQISVIPSGSLALDVALGVGGYPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGA+DI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAIDIVVIDSVAALVPRAEIEGEMGDTHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY++VRL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKQGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DI YG+GIS  GEL+D+ V+  IVDKSGAW+ +K +R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKIAEVDIKYGQGISQEGELLDMAVEKDIVDKSGAWYGYKEERIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           EN+K ++ ++ E+   I  L+R   G+     L E     
Sbjct: 302 ENAKTYIHDHPEMMAEISHLVRDAYGIGDGQTLVEEGQEE 341


>gi|256618079|ref|ZP_05474925.1| protein recA [Enterococcus faecalis ATCC 4200]
 gi|256597606|gb|EEU16782.1| protein recA [Enterococcus faecalis ATCC 4200]
          Length = 348

 Score =  366 bits (939), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 196/342 (57%), Positives = 266/342 (77%), Gaps = 2/342 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ +GKG+IM+LG +    + I  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKVALDAALKKIEKNFGKGSIMKLGEKAD--QKISTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT++LH IA+ Q+ GGT AF+DAEHALD  YA KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVSLHAIAEVQRNGGTAAFIDAEHALDPQYAEKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ+LEI D LV SGA+DI+VIDSVAAL PRAEI+G+MG S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQSLEIADALVSSGAIDIVVIDSVAALVPRAEIDGEMGASHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY++VRL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKQGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+ V+  ++ KSGAW+ +K +R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGQGISQEGELLDMAVEKDLISKSGAWYGYKEERIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           EN+K ++ ++ E+   +  L+R   G+   S + E A   ++
Sbjct: 302 ENAKQYMADHPEMMAEVSKLVRDAYGIGDGSTITEEAEGQEE 343


>gi|260914564|ref|ZP_05921032.1| recombination protein A [Pasteurella dagmatis ATCC 43325]
 gi|260631355|gb|EEX49538.1| recombination protein A [Pasteurella dagmatis ATCC 43325]
          Length = 354

 Score =  366 bits (939), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 224/351 (63%), Positives = 284/351 (80%), Gaps = 4/351 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K+KAL AAL QI++ +GKG+IM+LG   ++   +E VS+GSL LD+ALGIGG P GRIV
Sbjct: 6   EKNKALAAALGQIEKQFGKGSIMKLGDTQAL--DVEAVSTGSLSLDVALGIGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IAQ+QK G TCAF+DAEHALD IYA KLGV++  LL+SQPD G
Sbjct: 64  EIFGPESSGKTTLTLSVIAQAQKEGKTCAFIDAEHALDPIYAAKLGVNVNELLVSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVD+I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT  I
Sbjct: 124 EQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLTGQI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD + + GN+T
Sbjct: 184 KNSNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVIGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PF+QV+F I+YG+GIS  GELI+LGVK  +VDKSGAW+++ G+++GQG+
Sbjct: 244 RVKVVKNKVAAPFRQVDFQILYGQGISKTGELIELGVKHKLVDKSGAWYAYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD-DTD 360
            N+  +L E+ E A  +E+ LR       + +L    I  +++AD D D+D
Sbjct: 304 ANAMKWLEEHPEEALALETKLRNELLANPEKVLAAD-IAEQNEADMDLDSD 353


>gi|30524998|emb|CAD70708.1| RecA protein [Burkholderia fungorum]
          Length = 333

 Score =  366 bits (939), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 218/317 (68%), Positives = 275/317 (86%), Gaps = 1/317 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG++M+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 10  IEKQFGKGSVMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 68

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +A+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LVR
Sbjct: 69  LTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVR 128

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 129 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 188

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A P
Sbjct: 189 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPP 248

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQG++N++ FLREN +
Sbjct: 249 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQGKDNAREFLRENPD 308

Query: 323 IAENIESLLRQNAGLVA 339
           IA  IE+ +R++ G+ A
Sbjct: 309 IAREIENRIRESLGVNA 325


>gi|104783104|ref|YP_609602.1| recombinase A [Pseudomonas entomophila L48]
 gi|122402255|sp|Q1I6B7|RECA_PSEE4 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|95112091|emb|CAK16818.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Pseudomonas entomophila L48]
          Length = 355

 Score =  366 bits (939), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 210/325 (64%), Positives = 267/325 (82%), Gaps = 2/325 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKRALAAALGQIERQFGKGAVMRMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAEAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK++ PF+Q EF I+YG+GI   GE+IDLGV   +V+KSGAW+S++G ++GQG+
Sbjct: 242 RVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVAQGLVEKSGAWYSYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
            N+  +L+EN  I   IE  +R+  
Sbjct: 302 ANAAKYLQENPAIGAEIEKQIREKL 326


>gi|166712453|ref|ZP_02243660.1| recombinase A [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 344

 Score =  366 bits (939), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 220/352 (62%), Positives = 283/352 (80%), Gaps = 13/352 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AALSQI++ +GKG++M++G    + E +EV+ +GSL LDIALG GG PKGR+V
Sbjct: 4   NKKRALSAALSQIEKQFGKGSVMRMGD--RVIEAVEVIPTGSLMLDIALGTGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAQCQKLGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS +VDI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSSSVDIVVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  ++VFINQ+RMKIGVM    SPE TTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 182 KRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELID+GV+A +V+K+GAW+S+  +R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVEKAGAWYSYGDERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           G++N++ +LR+N ++A  +E+ LR+           +PA   ++  D ++ +
Sbjct: 302 GKDNARTYLRDNPQVAVRLEAELREKF---------QPAEAPREAGDDEEKE 344


>gi|218768448|ref|YP_002342960.1| recombinase A [Neisseria meningitidis Z2491]
 gi|9911105|sp|P56987|RECA_NEIMA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|93117295|gb|ABE99565.1| RecA [Neisseria meningitidis]
 gi|93117297|gb|ABE99566.1| RecA [Neisseria meningitidis]
 gi|93117303|gb|ABE99569.1| RecA [Neisseria meningitidis]
 gi|121052456|emb|CAM08792.1| RecA protein [Neisseria meningitidis Z2491]
 gi|319410693|emb|CBY91072.1| RecA protein (recombinase A) [Neisseria meningitidis WUE 2594]
          Length = 348

 Score =  366 bits (939), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 221/351 (62%), Positives = 282/351 (80%), Gaps = 6/351 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKSKAL AAL+QI++ +GKGAIM++       E +EV+S+GSLGLD+ALG+GG P+GRIV
Sbjct: 4   DKSKALAAALAQIEKSFGKGAIMKM-DGSQQEENLEVISTGSLGLDLALGVGGLPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  +AQ QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDTG
Sbjct: 63  EIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG +D++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  I
Sbjct: 123 EQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGHI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR GSIK  + + GN+T
Sbjct: 183 KKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+GVK  I++KSGAW+S+ G ++GQG+
Sbjct: 243 RVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           +N +++L+EN E+A+ I++ +R   G+            T+D+ D +  + 
Sbjct: 303 DNVRVWLKENPEVADEIDAKIRALNGV-----EMHITEGTQDETDGERPEE 348


>gi|229597118|ref|YP_001599484.2| recombinase A [Neisseria meningitidis 053442]
 gi|254672334|emb|CBA05502.1| RecA protein [Neisseria meningitidis alpha275]
          Length = 348

 Score =  366 bits (939), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 221/348 (63%), Positives = 283/348 (81%), Gaps = 3/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKSKAL AAL+QI++ +GKGAIM++       E +EV+S+GSLGLD+ALG+GG P+GRIV
Sbjct: 4   DKSKALAAALAQIEKSFGKGAIMKM-DGSQQEENLEVISTGSLGLDLALGVGGLPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  +AQ QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDTG
Sbjct: 63  EIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG +D++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  I
Sbjct: 123 EQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGHI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR GSIK  + + GN+T
Sbjct: 183 KKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+GVK  I++KSGAW+S+ G ++GQG+
Sbjct: 243 RVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           +N +++L+EN EIA+ I++ +R   G+  +  + E  ++  D    ++
Sbjct: 303 DNVRVWLKENPEIADEIDAKIRALNGV--EMHITEGKLDETDGERPEE 348


>gi|289662679|ref|ZP_06484260.1| recombinase A [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 344

 Score =  366 bits (939), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 222/352 (63%), Positives = 284/352 (80%), Gaps = 13/352 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AALSQI++ +GKG++M++G    + E +EV+ +GSL LDIALGIGG PKGR+V
Sbjct: 4   NKKRALSAALSQIEKQFGKGSVMRMGD--RVIEAVEVIPTGSLMLDIALGIGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAQCQKLGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS +VDI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSSSVDIVVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  ++VFINQ+RMKIGVM    SPE TTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 182 KRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELID+GV+A +VDK+GAW+S+  +R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVDKAGAWYSYGDERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           G++N++ +LR+N ++A  +E+ LR+           +PA   ++  D ++ +
Sbjct: 302 GKDNARTYLRDNPQVAVRLEAELREKF---------QPAEAPREAGDDEEKE 344


>gi|77457402|ref|YP_346907.1| recombinase A [Pseudomonas fluorescens Pf0-1]
 gi|123772305|sp|Q3KH38|RECA_PSEPF RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|77381405|gb|ABA72918.1| recombinase A [Pseudomonas fluorescens Pf0-1]
          Length = 352

 Score =  366 bits (939), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 224/350 (64%), Positives = 277/350 (79%), Gaps = 5/350 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI+R +GKGA+M++G Q    + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKKALAAALGQIERQFGKGAVMRMGDQDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAQAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+ASPF+Q EF I+YG+GI   GE+IDLGV    V+KSGAW++++G ++GQG+
Sbjct: 242 RVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNA---GLVADSLLQEPAINTKDDADKD 357
            NS  FL +N E+A  +E  LR       ++ADS          D AD D
Sbjct: 302 ANSAKFLADNPEVAAKLEKQLRDKLLSPAVIADSKASAVKETEDDLADAD 351


>gi|212634215|ref|YP_002310740.1| recombinase A [Shewanella piezotolerans WP3]
 gi|226737763|sp|B8CJQ6|RECA_SHEPW RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|212555699|gb|ACJ28153.1| RecA bacterial DNA recombination protein [Shewanella piezotolerans
           WP3]
          Length = 355

 Score =  366 bits (938), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 213/351 (60%), Positives = 275/351 (78%), Gaps = 2/351 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL A L QI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P GRI
Sbjct: 5   PNKEKALNAVLGQIEKQFGKGSIMKLGEDRSM--DVETISTGSLSLDVALGAGGLPMGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTL L  IA +QK G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDT
Sbjct: 63  VEIYGPESSGKTTLTLEVIAAAQKQGKTCAFIDAEHALDPVYAQKLGVDIDNLLCSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  +
Sbjct: 123 GEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           + +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD+D + GN+
Sbjct: 183 LKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDRDEVIGNE 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A+PFKQ EF I+YG+GI+  GEL+DLGV   +++KSGAW+++KG ++GQG
Sbjct: 243 TRVKVVKNKIAAPFKQAEFQILYGQGINSTGELVDLGVVHKLIEKSGAWYAYKGSKIGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           R N+  +L EN EI++ IE+ LR       + +         D+ D +  +
Sbjct: 303 RANAGKYLIENPEISDEIETALRSMLLSKGEKVAAGATDTAGDNVDMETGE 353


>gi|67459613|ref|YP_247237.1| recombinase A [Rickettsia felis URRWXCal2]
 gi|75535990|sp|Q4UK63|RECA_RICFE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|67005146|gb|AAY62072.1| RecA protein [Rickettsia felis URRWXCal2]
          Length = 343

 Score =  366 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 222/343 (64%), Positives = 284/343 (82%), Gaps = 2/343 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+  DK +A+ AAL+QI++ YGKG++M+LG + +I   IE VS+GSLGLDIALGIGG PK
Sbjct: 1   MSNTDKERAIAAALAQIEKSYGKGSVMKLGQRPNI--DIEAVSTGSLGLDIALGIGGVPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA+KLGV++  L+ISQ
Sbjct: 59  GRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELIISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++    QARLMSQALRKL
Sbjct: 119 PDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+SI+R+ CI VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIRR+GSIKDK+ + 
Sbjct: 179 TASINRTNCITVFINQIRMKIGVMFGNPETTTGGNALKFYASVRIDIRRIGSIKDKEEVI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G+QT+VKVVKNK++ PFK  +FDIMYG GIS  GE+IDLGVK  IV+KSG+WFS+   R+
Sbjct: 239 GSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYNNVRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
           GQGREN K +L+E+ +I+  IE ++R+ +  + +  L +    
Sbjct: 299 GQGRENVKQYLKEHPQISNEIEKIIREKSSKITNINLDQTEEE 341


>gi|23099079|ref|NP_692545.1| recombinase A [Oceanobacillus iheyensis HTE831]
 gi|30173249|sp|Q8CXG7|RECA_OCEIH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|22777307|dbj|BAC13580.1| multifunctional protein involved in homologous recombination
           (recombinase) [Oceanobacillus iheyensis HTE831]
          Length = 347

 Score =  366 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 203/347 (58%), Positives = 266/347 (76%), Gaps = 2/347 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+ +AL+ AL QI++ +GKG+IM++G        I  + SGSL LD+ALGIGG+P+GR
Sbjct: 1   MSDRKQALDMALRQIEKQFGKGSIMKMGENE--IPKIATIPSGSLALDVALGIGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTT+ALH IA++QK GG  AF+DAEHALD +YA+ LGV++  LL+SQPD
Sbjct: 59  VVEIYGPESSGKTTVALHAIAEAQKQGGQAAFIDAEHALDPVYAKALGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDIIV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK   +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR  ++K  +   GN
Sbjct: 179 AINKSKTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKLGNDAVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + R+KVVKNK+A PFKQ E DIMYG+GIS  GE++D+G    IV KSGAW+S+   RLGQ
Sbjct: 239 KARIKVVKNKVAPPFKQAEVDIMYGKGISKEGEVLDIGSDLDIVMKSGAWYSYNNDRLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           GREN+K +L+E+ E+   I   +RQ+  L      +     +++  D
Sbjct: 299 GRENAKQYLKEHEEVLTEIHQSIRQHYELDKVDEDKTEEEASQESLD 345


>gi|47678154|emb|CAF21840.1| RecA recombinase [Enterococcus saccharolyticus]
          Length = 346

 Score =  366 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 198/329 (60%), Positives = 261/329 (79%), Gaps = 2/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ +GKGA+M+LG +    + I  + SGSL LD+ALG+GGFP+GRIV
Sbjct: 4   DRKAALDAALKKIEKNFGKGAVMKLGEKAD--QRISTIPSGSLALDVALGVGGFPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A+ QK GGT AF+DAEHALD  YA KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAVAEVQKQGGTAAFIDAEHALDPQYAEKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+VIDSVAAL PRAEI+G+MG++  G+QARLMSQALRKL+ +I
Sbjct: 122 EQGLEIADALVSSGAVDIVVIDSVAALVPRAEIDGEMGDAHVGLQARLMSQALRKLSGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY++VRL++RR   +K    I GN+T
Sbjct: 182 NKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKSGTDIIGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYGEGIS  GEL+D+  +  I+DKSGAW+S+KG R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGEGISQVGELLDMAAEKDIIDKSGAWYSYKGDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           EN K +++++ E+   + + +R   G+  
Sbjct: 302 ENVKNYMKDHPEMVAEVSARVRDAYGIGT 330


>gi|31540541|gb|AAP49233.1| RecA [Mycobacterium aurum]
          Length = 317

 Score =  366 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 202/313 (64%), Positives = 256/313 (81%), Gaps = 2/313 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE AL+QI + +GKG++M+LG +  +   I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 6   PDREKALELALAQIDKNFGKGSVMRLGDEVRV--PISVIPTGSIALDVALGIGGLPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD   LL+SQPDT
Sbjct: 64  IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAQKLGVDTDALLVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 124 GEQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +S S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD     GN+
Sbjct: 184 LSNSNTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF++ G++LGQG
Sbjct: 244 TRVKVVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVEQGFIRKSGSWFTYDGEQLGQG 303

Query: 310 RENSKIFLRENIE 322
           +EN++ F+ EN E
Sbjct: 304 KENARNFMIENPE 316


>gi|157326921|gb|ABV44573.1| RecA [Burkholderia cenocepacia]
          Length = 313

 Score =  366 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 220/314 (70%), Positives = 273/314 (86%), Gaps = 1/314 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESLLRQNAG 336
           IA  IE+ +R++ G
Sbjct: 300 IAREIENRIRESLG 313


>gi|121635134|ref|YP_975379.1| recombinase A [Neisseria meningitidis FAM18]
 gi|166220659|sp|A1KUQ0|RECA_NEIMF RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|93117291|gb|ABE99563.1| RecA [Neisseria meningitidis H44/76]
 gi|93117293|gb|ABE99564.1| RecA [Neisseria meningitidis]
 gi|93117299|gb|ABE99567.1| RecA [Neisseria meningitidis]
 gi|93117301|gb|ABE99568.1| RecA [Neisseria meningitidis]
 gi|120866840|emb|CAM10598.1| RecA protein [Neisseria meningitidis FAM18]
 gi|316984575|gb|EFV63540.1| protein RecA [Neisseria meningitidis H44/76]
 gi|325128496|gb|EGC51374.1| protein RecA [Neisseria meningitidis N1568]
 gi|325132190|gb|EGC54886.1| protein RecA [Neisseria meningitidis M6190]
 gi|325138123|gb|EGC60696.1| protein RecA [Neisseria meningitidis ES14902]
 gi|325140610|gb|EGC63130.1| protein RecA [Neisseria meningitidis CU385]
 gi|325198580|gb|ADY94036.1| protein RecA [Neisseria meningitidis G2136]
 gi|325199939|gb|ADY95394.1| protein RecA [Neisseria meningitidis H44/76]
          Length = 348

 Score =  366 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 222/351 (63%), Positives = 282/351 (80%), Gaps = 6/351 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKSKAL AAL+QI++ +GKGAIM++       E +EV+S+GSLGLD+ALG+GG P+GRIV
Sbjct: 4   DKSKALAAALAQIEKSFGKGAIMKM-DGSQQEENLEVISTGSLGLDLALGVGGLPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  +AQ QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDTG
Sbjct: 63  EIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG +D++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  I
Sbjct: 123 EQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGHI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR GSIK  + + GN+T
Sbjct: 183 KKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+GVK  I++KSGAW+S+ G ++GQG+
Sbjct: 243 RVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           +N +++L+EN EIA+ I++ +R   G+            T+D+ D +  + 
Sbjct: 303 DNVRVWLKENPEIADEIDAKIRALNGI-----EMHITEGTQDETDGERPEE 348


>gi|70904860|gb|AAZ14009.1| RecA [Burkholderia multivorans]
          Length = 318

 Score =  366 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 220/317 (69%), Positives = 275/317 (86%), Gaps = 1/317 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GK +IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKESIMRMGD-GDAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESLLRQNAGLVA 339
           IA  IE+ +R++ G+ A
Sbjct: 300 IAREIENRIRESLGVAA 316


>gi|285017962|ref|YP_003375673.1| protein reca (recombinase a) [Xanthomonas albilineans GPE PC73]
 gi|283473180|emb|CBA15686.1| probable protein reca (recombinase a) [Xanthomonas albilineans]
          Length = 345

 Score =  366 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 224/352 (63%), Positives = 283/352 (80%), Gaps = 13/352 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AALSQI++ +GKG++M++G    + E +EV+ +GSL LDIALGIGG PKGR+V
Sbjct: 4   NKKRALAAALSQIEKQFGKGSVMRMGD--RVIEAVEVIPTGSLMLDIALGIGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK GGT AF+DAEHALD +YA KLGV++  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAQCQKNGGTAAFIDAEHALDPVYAAKLGVNVDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VDI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSGSVDIVVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  ++VFINQ+RMKIGVM    SPETTTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 182 KRSNTLVVFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELID+GV+A +V+K+GAW+S+  +R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVEKAGAWYSYGSERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           G++N++ +LR+N ++A  +ES LR+           +P       AD +D +
Sbjct: 302 GKDNARGYLRDNPQVAAKLESELREKF---------QPTEIAPSPADAEDLE 344


>gi|260554248|ref|ZP_05826501.1| RecA/RadA recombinase [Acinetobacter sp. RUH2624]
 gi|260404628|gb|EEW98145.1| RecA/RadA recombinase [Acinetobacter sp. RUH2624]
          Length = 350

 Score =  366 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 218/348 (62%), Positives = 275/348 (79%), Gaps = 6/348 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL+AALSQI++ +GK  +M+LG      + +E VS+GSL LDIALGIGG PKGRI+
Sbjct: 4   NKSKALQAALSQIEKQFGKNTVMRLGDNT--VQAVEAVSTGSLTLDIALGIGGLPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ L  IAQ QK+GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD G
Sbjct: 62  EIYGPESSGKTTMTLQAIAQCQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T + 
Sbjct: 122 EQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNA 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G +K+ D I G++T
Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNKMA PF++  F I+YG+G +  GEL+DL V+  IV K+GAW+S++G ++GQG+
Sbjct: 242 KVKVVKNKMAPPFREAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            N   +  EN  IAE IE  +R+              +  +DD ++ D
Sbjct: 302 NNVIRYFEENKHIAEEIERNIREQLLTTG----TNGTVQIEDDEEEPD 345


>gi|259046489|ref|ZP_05736890.1| recombinase A [Granulicatella adiacens ATCC 49175]
 gi|259036905|gb|EEW38160.1| recombinase A [Granulicatella adiacens ATCC 49175]
          Length = 348

 Score =  366 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 195/337 (57%), Positives = 260/337 (77%), Gaps = 2/337 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
              ++ +ALE AL +I++ YGKGA+M+LG +  +   I+ VSSGSL LDIALG+GGFP+G
Sbjct: 3   ENENRQRALEDALKKIEKSYGKGAVMKLGEK--VDTQIQTVSSGSLALDIALGVGGFPRG 60

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+E+YGPESSGKTT+ALH +A+ QK GG  AF+DAEHALD  YA+ LGV++  LL+SQP
Sbjct: 61  RIIEVYGPESSGKTTVALHAVAEVQKRGGVAAFIDAEHALDPEYAKALGVNIDELLLSQP 120

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQ L I D LV SGAVDI+++DSVAAL PRAEI+GDMG+S  G+QARLMSQALRKL+
Sbjct: 121 DTGEQGLGIADALVSSGAVDIVIVDSVAALVPRAEIDGDMGQSHVGLQARLMSQALRKLS 180

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY++VRL++RR   IK    I G
Sbjct: 181 GSINKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRADQIKQGTEILG 240

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           NQT++KVVKNK+A PFK    DIMYGEGIS  GEL+D+      V KSGAW+++  +++G
Sbjct: 241 NQTKIKVVKNKVAPPFKTAVVDIMYGEGISQLGELLDMAADLDFVKKSGAWYAYNDEKIG 300

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
           QGREN+K +L ++ E+  ++   +R + G+   + ++
Sbjct: 301 QGRENAKAYLADHPEVVADLNQKVRAHYGIGVAAPVE 337


>gi|28378887|ref|NP_785779.1| recombinase A [Lactobacillus plantarum WCFS1]
 gi|254557092|ref|YP_003063509.1| recombinase A [Lactobacillus plantarum JDM1]
 gi|300769723|ref|ZP_07079606.1| recombination protein A [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308181087|ref|YP_003925215.1| recombinase A [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|37537944|sp|Q88UZ4|RECA_LACPL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|28271724|emb|CAD64630.1| recombinase A [Lactobacillus plantarum WCFS1]
 gi|47600759|emb|CAF21793.1| recombinase A [Lactobacillus plantarum subsp. plantarum]
 gi|254046019|gb|ACT62812.1| recombinase A [Lactobacillus plantarum JDM1]
 gi|300492766|gb|EFK27951.1| recombination protein A [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308046578|gb|ADN99121.1| recombinase A [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 380

 Score =  366 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 192/345 (55%), Positives = 260/345 (75%), Gaps = 2/345 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL +I++ +GKGAIM++G        I  +SSGSL LD ALG+GG+P+GRIVE
Sbjct: 5   RKAALDTALKKIEKNFGKGAIMRMGDAAQTT--ISTISSGSLALDDALGVGGYPRGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGE
Sbjct: 63  IYGPESSGKTTVALHAVAEVQKQGGTAAYIDAENALDPVYAEHLGVNIDDLLLSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q LEI D LV SGAVDI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +++
Sbjct: 123 QGLEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTLN 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++K I +FINQ+R K+GVMFG+PETT GG ALKFY+++RL++RR   IK+  +I GN+ R
Sbjct: 183 KTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATIRLEVRRAEQIKEGTNIIGNRVR 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           +KVVKNK+A PFK+ E DIMYG+GIS  GE++D+  +  IV KSG+W+S+   R+GQGRE
Sbjct: 243 IKVVKNKVAPPFKRAEVDIMYGQGISQTGEIVDMAAEKDIVKKSGSWYSYGDDRIGQGRE 302

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           N+K +L E+ ++   I   +R   G+ A         +   +A  
Sbjct: 303 NAKKYLDEHPDVMTEIRQKVRDAYGMDATGEETSETDDQAKEAKD 347


>gi|221309569|ref|ZP_03591416.1| recombinase A [Bacillus subtilis subsp. subtilis str. 168]
 gi|221318816|ref|ZP_03600110.1| recombinase A [Bacillus subtilis subsp. subtilis str. JH642]
 gi|40070|emb|CAA36377.1| unnamed protein product [Bacillus subtilis]
          Length = 347

 Score =  366 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 205/335 (61%), Positives = 269/335 (80%), Gaps = 3/335 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG +      I  V SGSL LD ALGIGG+P+GR
Sbjct: 1   MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTR--ISTVPSGSLALDTALGIGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT+ALH IA+ Q+   T AF+DAEHALD +YA+KLGV+++ LL+SQPD
Sbjct: 59  IIEVYGPESSGKTTVALHAIAEVQQQ-RTSAFIDAEHALDPVYAQKLGVNIEELLLSQPD 117

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDI+V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 118 TGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 177

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K  + + GN
Sbjct: 178 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGN 237

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK+A PF+  E DIMYGEGIS  GE+IDLG +  IV KSG+W+S++ +RLGQ
Sbjct: 238 KTKIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQ 297

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343
           GREN+K FL+EN +I   I+  +R++ GL  + ++
Sbjct: 298 GRENAKQFLKENKDIMLMIQEQIREHYGLDNNGVV 332


>gi|260892529|ref|YP_003238626.1| recA protein [Ammonifex degensii KC4]
 gi|260864670|gb|ACX51776.1| recA protein [Ammonifex degensii KC4]
          Length = 346

 Score =  366 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 196/348 (56%), Positives = 265/348 (76%), Gaps = 2/348 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+ K LE  L+QI+R +GKGAIM+LG   S F+ +EV+ SGS+ LD+ALGIGGFP+GR
Sbjct: 1   MSDRQKMLETTLAQIERQFGKGAIMRLGEAASRFQ-VEVIPSGSIALDVALGIGGFPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEI+GPESSGKTT+ALH +A++QK GG  AF+DAEHALD +YA+++GVD+ NLL+SQPD
Sbjct: 60  VVEIFGPESSGKTTVALHAVAEAQKMGGIAAFIDAEHALDPVYAQRVGVDVDNLLVSQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDIIV+DSVAAL PRAE+EG+MG++  G+QARLMSQALRKLT 
Sbjct: 120 TGEQALEIAEALVRSGAVDIIVVDSVAALVPRAELEGEMGDAHVGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            I++S+   +FINQ+R K+G  +G+PETT GG ALKFY+SVRL++R+V  IK      G 
Sbjct: 180 VIAKSRTTAIFINQIREKVGA-YGNPETTPGGRALKFYASVRLEVRKVDDIKRGTEKIGT 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + R +VVKNK+A PFKQ EFDI++GEGIS  G L+D  +   ++ K+G+W+S+   RLGQ
Sbjct: 239 RVRARVVKNKLAPPFKQAEFDILFGEGISREGSLLDAALATKLITKTGSWYSYGDIRLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           GREN + +L+E+ E+ + IE+ +RQ       + L        ++ + 
Sbjct: 299 GRENVREYLKEHPELFQEIENKIRQLLQGGQAAPLVLSTSEGPEEEEG 346


>gi|169633342|ref|YP_001707078.1| recombinase A [Acinetobacter baumannii SDF]
 gi|169795694|ref|YP_001713487.1| recombinase A [Acinetobacter baumannii AYE]
 gi|184158405|ref|YP_001846744.1| recombinase A [Acinetobacter baumannii ACICU]
 gi|213158361|ref|YP_002319659.1| DNA strand exchange and recombination protein RecA [Acinetobacter
           baumannii AB0057]
 gi|215483180|ref|YP_002325387.1| protein RecA [Acinetobacter baumannii AB307-0294]
 gi|229577096|ref|YP_001084991.2| recombinase A [Acinetobacter baumannii ATCC 17978]
 gi|239501635|ref|ZP_04660945.1| recombinase A [Acinetobacter baumannii AB900]
 gi|260554756|ref|ZP_05826977.1| recA protein [Acinetobacter baumannii ATCC 19606]
 gi|294838602|ref|ZP_06783285.1| recombinase A [Acinetobacter sp. 6013113]
 gi|294842278|ref|ZP_06786961.1| recombinase A [Acinetobacter sp. 6014059]
 gi|294859590|ref|ZP_06797359.1| recombinase A [Acinetobacter sp. 6013150]
 gi|301348114|ref|ZP_07228855.1| recombinase A [Acinetobacter baumannii AB056]
 gi|301512103|ref|ZP_07237340.1| recombinase A [Acinetobacter baumannii AB058]
 gi|301597370|ref|ZP_07242378.1| recombinase A [Acinetobacter baumannii AB059]
 gi|226737747|sp|B7H1V4|RECA_ACIB3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226737748|sp|B7I9U0|RECA_ACIB5 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238685519|sp|A3M645|RECA_ACIBT RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238688039|sp|B0V6E0|RECA_ACIBY RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238688140|sp|B0VMV7|RECA_ACIBS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238691026|sp|B2I316|RECA_ACIBC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|169148621|emb|CAM86487.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Acinetobacter baumannii AYE]
 gi|169152134|emb|CAP01033.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Acinetobacter baumannii]
 gi|183209999|gb|ACC57397.1| RecA/RadA recombinase [Acinetobacter baumannii ACICU]
 gi|193077556|gb|ABO12389.2| DNA strand exchange and recombination protein [Acinetobacter
           baumannii ATCC 17978]
 gi|213057521|gb|ACJ42423.1| DNA strand exchange and recombination protein RecA [Acinetobacter
           baumannii AB0057]
 gi|213987860|gb|ACJ58159.1| protein RecA [Acinetobacter baumannii AB307-0294]
 gi|260411298|gb|EEX04595.1| recA protein [Acinetobacter baumannii ATCC 19606]
 gi|322508729|gb|ADX04183.1| recA [Acinetobacter baumannii 1656-2]
 gi|323518334|gb|ADX92715.1| recombinase A [Acinetobacter baumannii TCDC-AB0715]
          Length = 349

 Score =  366 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 219/347 (63%), Positives = 276/347 (79%), Gaps = 6/347 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL+AALSQI++ +GK  +M+LG      + +E VS+GSL LDIALGIGG PKGRI+
Sbjct: 4   NKSKALQAALSQIEKQFGKNTVMRLGDNT--VQAVEAVSTGSLTLDIALGIGGLPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ L  IAQ QK+GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD G
Sbjct: 62  EIYGPESSGKTTMTLQAIAQCQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T + 
Sbjct: 122 EQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNA 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G +K+ D I G++T
Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNKMA PFK+  F I+YG+G +  GEL+DL V+  IV K+GAW+S++G ++GQG+
Sbjct: 242 KVKVVKNKMAPPFKEAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
            N   +  EN +IAE IE  +R+             A+  +D+ + D
Sbjct: 302 NNVIRYFEENTQIAEEIERNIREQLLTTG----TNGAVQIEDEEEPD 344


>gi|311739647|ref|ZP_07713482.1| recombination protein A [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311305463|gb|EFQ81531.1| recombination protein A [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 377

 Score =  366 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 214/364 (58%), Positives = 272/364 (74%), Gaps = 18/364 (4%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+AA++ I++ YGKGA+M+LG        I+ +SSG+  +D+ALGIGGFP+GRIV
Sbjct: 15  DRQKALDAAMAMIEKDYGKGAVMRLGDDNR--PPIKAISSGNTAIDVALGIGGFPRGRIV 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA +QK GG  AF+DAEHALD  YAR LGVD  NLL+SQPDTG
Sbjct: 73  EIYGPESSGKTTVALHAIASAQKDGGIAAFIDAEHALDPQYARLLGVDTDNLLVSQPDTG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DIIV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 133 EQALEIADMLVRSGAIDIIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVR DIRR+ ++KD     GN+T
Sbjct: 193 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRCDIRRIQTLKDGQDAIGNRT 252

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK++ PFK  EFDIMYGEGIS    +IDLGV+   + KSG+WF+++G +LGQG+
Sbjct: 253 KLKVVKNKVSPPFKIAEFDIMYGEGISRESSIIDLGVENGFIRKSGSWFTYEGDQLGQGK 312

Query: 311 ENSKIFLRENIEIAENIESLLRQNAG----------------LVADSLLQEPAINTKDDA 354
           E ++ FL++N ++A  IE  + Q  G                  AD  L + +++   + 
Sbjct: 313 EKARNFLKDNPDLANEIEQKIFQKLGIGEAAAEGEEGAAMDVPGADDPLTDESVDLVPNV 372

Query: 355 DKDD 358
           D DD
Sbjct: 373 DFDD 376


>gi|255325175|ref|ZP_05366281.1| protein RecA [Corynebacterium tuberculostearicum SK141]
 gi|255297740|gb|EET77051.1| protein RecA [Corynebacterium tuberculostearicum SK141]
          Length = 378

 Score =  366 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 214/364 (58%), Positives = 272/364 (74%), Gaps = 18/364 (4%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+AA++ I++ YGKGA+M+LG        I+ +SSG+  +D+ALGIGGFP+GRIV
Sbjct: 16  DRQKALDAAMAMIEKDYGKGAVMRLGDDNR--PPIKAISSGNTAIDVALGIGGFPRGRIV 73

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA +QK GG  AF+DAEHALD  YAR LGVD  NLL+SQPDTG
Sbjct: 74  EIYGPESSGKTTVALHAIASAQKDGGIAAFIDAEHALDPQYARLLGVDTDNLLVSQPDTG 133

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+DIIV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T ++
Sbjct: 134 EQALEIADMLVRSGAIDIIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 193

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVR DIRR+ ++KD     GN+T
Sbjct: 194 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRCDIRRIQTLKDGQDAIGNRT 253

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK++ PFK  EFDIMYGEGIS    +IDLGV+   + KSG+WF+++G +LGQG+
Sbjct: 254 KLKVVKNKVSPPFKIAEFDIMYGEGISRESSIIDLGVENGFIRKSGSWFTYEGDQLGQGK 313

Query: 311 ENSKIFLRENIEIAENIESLLRQNAG----------------LVADSLLQEPAINTKDDA 354
           E ++ FL++N ++A  IE  + Q  G                  AD  L + +++   + 
Sbjct: 314 EKARNFLKDNPDLANEIEQKIFQKLGIGEAAAEGEEGAAMDVPGADDPLTDESVDLVPNV 373

Query: 355 DKDD 358
           D DD
Sbjct: 374 DFDD 377


>gi|66044626|ref|YP_234467.1| recombinase A [Pseudomonas syringae pv. syringae B728a]
 gi|289674623|ref|ZP_06495513.1| recombinase A [Pseudomonas syringae pv. syringae FF5]
 gi|298488240|ref|ZP_07006275.1| RecA protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|302187192|ref|ZP_07263865.1| recombinase A [Pseudomonas syringae pv. syringae 642]
 gi|76363338|sp|Q4ZWP3|RECA_PSEU2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|63255333|gb|AAY36429.1| RecA bacterial DNA recombination protein [Pseudomonas syringae pv.
           syringae B728a]
 gi|298157248|gb|EFH98333.1| RecA protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|330896096|gb|EGH28317.1| recombinase A [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330936774|gb|EGH40938.1| recombinase A [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330950641|gb|EGH50901.1| recombinase A [Pseudomonas syringae Cit 7]
 gi|330968923|gb|EGH68989.1| recombinase A [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 354

 Score =  366 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 217/350 (62%), Positives = 275/350 (78%), Gaps = 5/350 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE++DL V    V+KSGAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYLNGEIVDLAVLHGFVEKSGAWYSYQGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNA---GLVADSLLQEPAINTKDDADKD 357
            NS  FL +N EI + +E  +R      G+   ++    A+   D ++ D
Sbjct: 302 ANSAKFLADNPEICKALEKQIRDKLLTPGVDTKAVGSREAVAADDMSEAD 351


>gi|254670267|emb|CBA05536.1| RecA protein [Neisseria meningitidis alpha153]
 gi|261392293|emb|CAX49819.1| RecA protein (recombinase A) [Neisseria meningitidis 8013]
 gi|308389550|gb|ADO31870.1| RecA protein [Neisseria meningitidis alpha710]
 gi|325136511|gb|EGC59115.1| protein RecA [Neisseria meningitidis M0579]
 gi|325204432|gb|ADY99885.1| protein RecA [Neisseria meningitidis M01-240355]
          Length = 348

 Score =  366 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 222/351 (63%), Positives = 282/351 (80%), Gaps = 6/351 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKSKAL AAL+QI++ +GKGAIM++       E +EV+S+GSLGLD+ALG+GG P+GRIV
Sbjct: 4   DKSKALAAALAQIEKSFGKGAIMKM-DGSQQEENLEVISTGSLGLDLALGVGGLPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  +AQ QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDTG
Sbjct: 63  EIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG +D++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  I
Sbjct: 123 EQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGHI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR GSIK  + + GN+T
Sbjct: 183 KKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+GVK  I++KSGAW+S+ G ++GQG+
Sbjct: 243 RVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           +N +++L+EN EIA+ I++ +R   G+            T+D+ D +  + 
Sbjct: 303 DNVRVWLKENPEIADEIDAKIRALNGV-----EMHITEGTQDETDGERPEE 348


>gi|157827740|ref|YP_001496804.1| recombinase A [Rickettsia bellii OSU 85-389]
 gi|166220672|sp|A8GY17|RECA_RICB8 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|157803044|gb|ABV79767.1| recombinase A [Rickettsia bellii OSU 85-389]
          Length = 343

 Score =  366 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 223/342 (65%), Positives = 285/342 (83%), Gaps = 2/342 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+ +DK KA+ AAL+QI++ YGKG++M+LG + ++   IE VS+GSLGLDIALGIGG PK
Sbjct: 1   MSNIDKEKAVAAALAQIEKSYGKGSVMKLGQRPNV--DIESVSTGSLGLDIALGIGGVPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA+KLGV++  L+ISQ
Sbjct: 59  GRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELIISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++    QARLMSQALRKL
Sbjct: 119 PDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ + 
Sbjct: 179 TASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEEVI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G+QT+VKVVKNK++ PFK  +FDIMYG GIS  GE+IDLGVK  I++KSG+WFS+   R+
Sbjct: 239 GSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIIEKSGSWFSYNSVRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348
           GQGREN K +L++N +I+  IE L+R+ +  V +   ++   
Sbjct: 299 GQGRENVKQYLKDNPKISNEIEKLVREKSSKVTNINFEQEEE 340


>gi|300743996|ref|ZP_07073016.1| protein RecA [Rothia dentocariosa M567]
 gi|311113248|ref|YP_003984470.1| recombination protein A [Rothia dentocariosa ATCC 17931]
 gi|300380357|gb|EFJ76920.1| protein RecA [Rothia dentocariosa M567]
 gi|310944742|gb|ADP41036.1| recombination protein A [Rothia dentocariosa ATCC 17931]
          Length = 370

 Score =  366 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 205/351 (58%), Positives = 266/351 (75%), Gaps = 2/351 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           ++KALEA +++I + YGKGAIM+LG + ++    EV+S+G++ LD ALGIGG P+GR++E
Sbjct: 18  RAKALEAVMAKIDKDYGKGAIMRLGDKETV--KTEVISTGAIALDAALGIGGLPRGRVIE 75

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH +A  QK GG  AF+DAEHALD +YA KLGVD   LL+SQPDTGE
Sbjct: 76  IYGPESSGKTTVALHAVANVQKAGGIAAFIDAEHALDPVYAAKLGVDTDALLVSQPDTGE 135

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DMLV SGAVDI+V+DSVAAL PRAEI+GDMG+S  G+QARLMSQALRK+T  ++
Sbjct: 136 QALEIMDMLVGSGAVDIVVVDSVAALVPRAEIDGDMGDSHVGLQARLMSQALRKITGRLA 195

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
            +    +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+DIRR+ ++KD  +  GN+TR
Sbjct: 196 STGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDIRRIETLKDGANPIGNKTR 255

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
            K+VKNKMA PFKQ EFDI+YGEGIS  G ++DL V+  IV KSGAWF++ G++LGQGRE
Sbjct: 256 AKIVKNKMAPPFKQAEFDILYGEGISVEGGILDLAVEHDIVKKSGAWFTYDGEQLGQGRE 315

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           N +  L++N E+ E ++  +    G++     +          + D  D +
Sbjct: 316 NVRKLLKDNPELTEELQYKVLVKLGIIDPEGEESSEEAEATSVEADPLDEL 366


>gi|76363330|sp|Q6KCJ3|RECA_ENTMU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|47678144|emb|CAF21835.1| RecA recombinase [Enterococcus mundtii]
          Length = 346

 Score =  366 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 202/340 (59%), Positives = 265/340 (77%), Gaps = 2/340 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ YGKG+IM+LG +  I + I  + SGSL LD+ALGIGG+P+GRI+
Sbjct: 4   DRKAALDAALKKIEKNYGKGSIMKLGEK--IDQQISTIPSGSLALDVALGIGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+VIDSVAAL PRAEI+G+MG+S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVIDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E D+MYG GIS  GEL+D+ V+  IVDKSGAW+S+K  R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKIAEVDVMYGLGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           EN+KI++  + E+   + +L+R   G+     + + A   
Sbjct: 302 ENAKIYMSNHPEMMAEVSTLVRAAYGIGEPVDVPQEAQEE 341


>gi|29377621|ref|NP_816775.1| recombinase A [Enterococcus faecalis V583]
 gi|227517221|ref|ZP_03947270.1| recombination protein A [Enterococcus faecalis TX0104]
 gi|227554589|ref|ZP_03984636.1| recombination protein A [Enterococcus faecalis HH22]
 gi|229547403|ref|ZP_04436128.1| recombination protein A [Enterococcus faecalis TX1322]
 gi|229547976|ref|ZP_04436701.1| recombination protein A [Enterococcus faecalis ATCC 29200]
 gi|255970636|ref|ZP_05421222.1| recombinase A [Enterococcus faecalis T1]
 gi|255974216|ref|ZP_05424802.1| recombinase A [Enterococcus faecalis T2]
 gi|256761011|ref|ZP_05501591.1| recombinase A [Enterococcus faecalis T3]
 gi|256854839|ref|ZP_05560203.1| recombinase A [Enterococcus faecalis T8]
 gi|256958446|ref|ZP_05562617.1| protein recA [Enterococcus faecalis DS5]
 gi|256960511|ref|ZP_05564682.1| recA [Enterococcus faecalis Merz96]
 gi|256963004|ref|ZP_05567175.1| recA [Enterococcus faecalis HIP11704]
 gi|257078242|ref|ZP_05572603.1| recA [Enterococcus faecalis JH1]
 gi|257080437|ref|ZP_05574798.1| recombinase A [Enterococcus faecalis E1Sol]
 gi|257083159|ref|ZP_05577520.1| recA [Enterococcus faecalis Fly1]
 gi|257088275|ref|ZP_05582636.1| RecA/RadA recombinase [Enterococcus faecalis D6]
 gi|257091406|ref|ZP_05585767.1| recombinase recA [Enterococcus faecalis CH188]
 gi|257418010|ref|ZP_05595004.1| recombinase A recA [Enterococcus faecalis T11]
 gi|257420388|ref|ZP_05597378.1| recombinase recA [Enterococcus faecalis X98]
 gi|293385293|ref|ZP_06631109.1| protein RecA [Enterococcus faecalis R712]
 gi|293389694|ref|ZP_06634138.1| protein RecA [Enterococcus faecalis S613]
 gi|294779161|ref|ZP_06744571.1| RecA protein [Enterococcus faecalis PC1.1]
 gi|300861650|ref|ZP_07107734.1| protein RecA [Enterococcus faecalis TUSoD Ef11]
 gi|307270513|ref|ZP_07551811.1| protein RecA [Enterococcus faecalis TX4248]
 gi|307273670|ref|ZP_07554898.1| protein RecA [Enterococcus faecalis TX0855]
 gi|307276602|ref|ZP_07557720.1| protein RecA [Enterococcus faecalis TX2134]
 gi|307284801|ref|ZP_07564957.1| protein RecA [Enterococcus faecalis TX0860]
 gi|307288392|ref|ZP_07568384.1| protein RecA [Enterococcus faecalis TX0109]
 gi|307292190|ref|ZP_07572054.1| protein RecA [Enterococcus faecalis TX0411]
 gi|312902017|ref|ZP_07761279.1| protein RecA [Enterococcus faecalis TX0470]
 gi|312905475|ref|ZP_07764589.1| protein RecA [Enterococcus faecalis TX0635]
 gi|312906644|ref|ZP_07765644.1| protein RecA [Enterococcus faecalis DAPTO 512]
 gi|312910895|ref|ZP_07769730.1| protein RecA [Enterococcus faecalis DAPTO 516]
 gi|312953274|ref|ZP_07772118.1| protein RecA [Enterococcus faecalis TX0102]
 gi|30179884|sp|P42444|RECA_ENTFA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|29345089|gb|AAO82845.1| recA protein [Enterococcus faecalis V583]
 gi|227075318|gb|EEI13281.1| recombination protein A [Enterococcus faecalis TX0104]
 gi|227176266|gb|EEI57238.1| recombination protein A [Enterococcus faecalis HH22]
 gi|229306852|gb|EEN72848.1| recombination protein A [Enterococcus faecalis ATCC 29200]
 gi|229307435|gb|EEN73422.1| recombination protein A [Enterococcus faecalis TX1322]
 gi|255961654|gb|EET94130.1| recombinase A [Enterococcus faecalis T1]
 gi|255967088|gb|EET97710.1| recombinase A [Enterococcus faecalis T2]
 gi|256682262|gb|EEU21957.1| recombinase A [Enterococcus faecalis T3]
 gi|256710399|gb|EEU25443.1| recombinase A [Enterococcus faecalis T8]
 gi|256948942|gb|EEU65574.1| protein recA [Enterococcus faecalis DS5]
 gi|256951007|gb|EEU67639.1| recA [Enterococcus faecalis Merz96]
 gi|256953500|gb|EEU70132.1| recA [Enterococcus faecalis HIP11704]
 gi|256986272|gb|EEU73574.1| recA [Enterococcus faecalis JH1]
 gi|256988467|gb|EEU75769.1| recombinase A [Enterococcus faecalis E1Sol]
 gi|256991189|gb|EEU78491.1| recA [Enterococcus faecalis Fly1]
 gi|256996305|gb|EEU83607.1| RecA/RadA recombinase [Enterococcus faecalis D6]
 gi|257000218|gb|EEU86738.1| recombinase recA [Enterococcus faecalis CH188]
 gi|257159838|gb|EEU89798.1| recombinase A recA [Enterococcus faecalis T11]
 gi|257162212|gb|EEU92172.1| recombinase recA [Enterococcus faecalis X98]
 gi|291077493|gb|EFE14857.1| protein RecA [Enterococcus faecalis R712]
 gi|291080941|gb|EFE17904.1| protein RecA [Enterococcus faecalis S613]
 gi|294453794|gb|EFG22186.1| RecA protein [Enterococcus faecalis PC1.1]
 gi|300849111|gb|EFK76864.1| protein RecA [Enterococcus faecalis TUSoD Ef11]
 gi|306496696|gb|EFM66249.1| protein RecA [Enterococcus faecalis TX0411]
 gi|306500692|gb|EFM70017.1| protein RecA [Enterococcus faecalis TX0109]
 gi|306503060|gb|EFM72317.1| protein RecA [Enterococcus faecalis TX0860]
 gi|306506712|gb|EFM75864.1| protein RecA [Enterococcus faecalis TX2134]
 gi|306509683|gb|EFM78725.1| protein RecA [Enterococcus faecalis TX0855]
 gi|306513094|gb|EFM81728.1| protein RecA [Enterococcus faecalis TX4248]
 gi|310627292|gb|EFQ10575.1| protein RecA [Enterococcus faecalis DAPTO 512]
 gi|310628779|gb|EFQ12062.1| protein RecA [Enterococcus faecalis TX0102]
 gi|310631204|gb|EFQ14487.1| protein RecA [Enterococcus faecalis TX0635]
 gi|311288763|gb|EFQ67319.1| protein RecA [Enterococcus faecalis DAPTO 516]
 gi|311290953|gb|EFQ69509.1| protein RecA [Enterococcus faecalis TX0470]
 gi|315026529|gb|EFT38461.1| protein RecA [Enterococcus faecalis TX2137]
 gi|315028305|gb|EFT40237.1| protein RecA [Enterococcus faecalis TX4000]
 gi|315031853|gb|EFT43785.1| protein RecA [Enterococcus faecalis TX0017]
 gi|315034874|gb|EFT46806.1| protein RecA [Enterococcus faecalis TX0027]
 gi|315144204|gb|EFT88220.1| protein RecA [Enterococcus faecalis TX2141]
 gi|315146532|gb|EFT90548.1| protein RecA [Enterococcus faecalis TX4244]
 gi|315150789|gb|EFT94805.1| protein RecA [Enterococcus faecalis TX0012]
 gi|315152843|gb|EFT96859.1| protein RecA [Enterococcus faecalis TX0031]
 gi|315154590|gb|EFT98606.1| protein RecA [Enterococcus faecalis TX0043]
 gi|315159538|gb|EFU03555.1| protein RecA [Enterococcus faecalis TX0312]
 gi|315161295|gb|EFU05312.1| protein RecA [Enterococcus faecalis TX0645]
 gi|315164370|gb|EFU08387.1| protein RecA [Enterococcus faecalis TX1302]
 gi|315167043|gb|EFU11060.1| protein RecA [Enterococcus faecalis TX1341]
 gi|315171149|gb|EFU15166.1| protein RecA [Enterococcus faecalis TX1342]
 gi|315172879|gb|EFU16896.1| protein RecA [Enterococcus faecalis TX1346]
 gi|315573192|gb|EFU85383.1| protein RecA [Enterococcus faecalis TX0309B]
 gi|315577071|gb|EFU89262.1| protein RecA [Enterococcus faecalis TX0630]
 gi|315581306|gb|EFU93497.1| protein RecA [Enterococcus faecalis TX0309A]
 gi|323479100|gb|ADX78539.1| recombination protein A [Enterococcus faecalis 62]
 gi|327536292|gb|AEA95126.1| recombination protein A [Enterococcus faecalis OG1RF]
 gi|329577821|gb|EGG59244.1| RecA protein [Enterococcus faecalis TX1467]
          Length = 348

 Score =  366 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 196/342 (57%), Positives = 265/342 (77%), Gaps = 2/342 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ +GKG+IM+LG +    + I  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKVALDAALKKIEKNFGKGSIMKLGEKAD--QKISTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT++LH IA+ Q+ GGT AF+DAEHALD  YA KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVSLHAIAEVQRNGGTAAFIDAEHALDPQYAEKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGA+DI+VIDSVAAL PRAEI+G+MG S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAIDIVVIDSVAALVPRAEIDGEMGASHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY++VRL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKQGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+ V+  ++ KSGAW+ +K +R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGQGISQEGELLDMAVEKDLISKSGAWYGYKEERIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           EN+K ++ ++ E+   +  L+R   G+   S + E A   ++
Sbjct: 302 ENAKQYMADHPEMMAEVSKLVRDAYGIGDGSTITEEAEGQEE 343


>gi|328949866|ref|YP_004367201.1| Protein recA [Marinithermus hydrothermalis DSM 14884]
 gi|328450190|gb|AEB11091.1| Protein recA [Marinithermus hydrothermalis DSM 14884]
          Length = 349

 Score =  366 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 196/345 (56%), Positives = 263/345 (76%), Gaps = 5/345 (1%)

Query: 7   MNIVDKS--KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           M  +DK   KALE+AL QI+R +GKG+IM+LG      + ++V+ +GSL LD+ALG+GG 
Sbjct: 1   MENLDKERKKALESALKQIERQFGKGSIMRLGEAPR--QQVDVIPTGSLALDLALGVGGI 58

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GRI+E+YGPES GKTTLALH IAQ+QK GG  AFVDAEHALD +YAR LGV++ +LL+
Sbjct: 59  PRGRIIEVYGPESGGKTTLALHIIAQAQKRGGVAAFVDAEHALDPVYARSLGVNVDDLLV 118

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI ++LVRSGAVD+IV+DSVAAL PRAEIEG+MG++  G+QARLMSQALR
Sbjct: 119 SQPDTGEQALEIVELLVRSGAVDVIVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALR 178

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS-IKDKD 243
           KLT+ +++S    +FINQ+R K+GVM+G+PETT GG ALKFY+SVRLD+RR G  IK  +
Sbjct: 179 KLTAVLAKSNTAAIFINQIREKVGVMYGNPETTPGGRALKFYASVRLDVRRSGQPIKQGN 238

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
              GN+ RVKV KNK+A PF++ E ++ +G+GI    +L+ + V   ++ K+G+W S+  
Sbjct: 239 EAIGNRVRVKVTKNKLAPPFREAEIELYFGKGIDPMADLVTVAVAQEVIQKAGSWLSYGD 298

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348
            RLGQG+E +  FLRE+ E+AE I + + + A   A  + +E A 
Sbjct: 299 TRLGQGKERAAEFLREHPELAEEIRARVLEAARSAAPQVPREAAE 343


>gi|296837403|gb|ADH59560.1| DNA recombinase [Burkholderia cenocepacia]
          Length = 317

 Score =  366 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 221/317 (69%), Positives = 276/317 (87%), Gaps = 1/317 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FI+Q
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIHQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESLLRQNAGLVA 339
           IA  IE+ +R++ G+VA
Sbjct: 300 IAREIENRIRESLGVVA 316


>gi|327394967|dbj|BAK12389.1| protein RecA [Pantoea ananatis AJ13355]
          Length = 356

 Score =  366 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 215/353 (60%), Positives = 281/353 (79%), Gaps = 4/353 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPE+SGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPEASGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+ FGEL+DLGVK  +++K+GAW+S+KG ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQIMYGEGINTFGELVDLGVKHKLIEKAGAWYSYKGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N+  FL+EN  +A+ ++  LR+      D  +        +D +K  ++  E
Sbjct: 304 ANAGNFLKENAAVADELDIKLREMLLNGGDQNIAADVAG--NDVEKAASEANE 354


>gi|91204932|ref|YP_537287.1| recombinase A [Rickettsia bellii RML369-C]
 gi|122990947|sp|Q1RKB6|RECA_RICBR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|91068476|gb|ABE04198.1| RecA [Rickettsia bellii RML369-C]
          Length = 343

 Score =  366 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 223/342 (65%), Positives = 285/342 (83%), Gaps = 2/342 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+ +DK KA+ AAL+QI++ YGKG++M+LG + ++   IE VS+GSLGLDIALGIGG PK
Sbjct: 1   MSNIDKEKAVAAALAQIEKSYGKGSVMKLGQRPNV--DIESVSTGSLGLDIALGIGGIPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA+KLGV++  L+ISQ
Sbjct: 59  GRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELIISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++    QARLMSQALRKL
Sbjct: 119 PDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ + 
Sbjct: 179 TASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEEVI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G+QT+VKVVKNK++ PFK  +FDIMYG GIS  GE+IDLGVK  I++KSG+WFS+   R+
Sbjct: 239 GSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIIEKSGSWFSYNSVRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348
           GQGREN K +L++N +I+  IE L+R+ +  V +   ++   
Sbjct: 299 GQGRENVKQYLKDNPKISNEIEKLVREKSSKVTNINFEQEEE 340


>gi|34581221|ref|ZP_00142701.1| RecA protein [Rickettsia sibirica 246]
 gi|229587122|ref|YP_002845623.1| recombinase A [Rickettsia africae ESF-5]
 gi|259563343|sp|C3PLP0|RECA_RICAE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|28262606|gb|EAA26110.1| RecA protein [Rickettsia sibirica 246]
 gi|228022172|gb|ACP53880.1| RecA [Rickettsia africae ESF-5]
          Length = 343

 Score =  366 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 222/343 (64%), Positives = 283/343 (82%), Gaps = 2/343 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+  DK +A+ AAL+QI++ YGKG++M+LG +  +   IE VS+GSLGLDIALGIGG PK
Sbjct: 1   MSNTDKERAIAAALAQIEKSYGKGSVMKLGQRPHV--DIEAVSTGSLGLDIALGIGGVPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA+KLGV++  L+ISQ
Sbjct: 59  GRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELIISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D L+RS  +D+I+IDSVAAL P++EIEG+MG++    QARLMSQALRKL
Sbjct: 119 PDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ + 
Sbjct: 179 TASINRTNCIAVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEEVI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G+QT+VKVVKNK++ PFK  +FDIMYG GIS  GE+IDLGVK  IV+KSG+WFS+K  R+
Sbjct: 239 GSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYKNVRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
           GQGREN K +L+E+ +I+  IE ++R+ +  + +  L +    
Sbjct: 299 GQGRENVKQYLKEHPQISNEIEKIIREKSSKITNINLDQTEEE 341


>gi|296837413|gb|ADH59565.1| DNA recombinase [Burkholderia lata]
          Length = 317

 Score =  366 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 221/316 (69%), Positives = 275/316 (87%), Gaps = 1/316 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI
Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299

Query: 324 AENIESLLRQNAGLVA 339
           A  IE+ +R++ G+VA
Sbjct: 300 AREIENRIRESLGVVA 315


>gi|148262302|ref|YP_001229008.1| recombinase A [Geobacter uraniireducens Rf4]
 gi|146395802|gb|ABQ24435.1| recA protein [Geobacter uraniireducens Rf4]
          Length = 333

 Score =  366 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 207/323 (64%), Positives = 267/323 (82%), Gaps = 1/323 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + ++ KA++ ALSQI++ +GKG+IM+LG        +  + +GSL LD+ALG+GG P+GR
Sbjct: 1   MQEREKAIDLALSQIEKQFGKGSIMRLG-NDEPLPDVAAIPTGSLSLDMALGVGGVPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTTLALH +A++QK  G  AF+DAEHALD  YARKLGV   +LL+SQPD
Sbjct: 60  IIEIYGPESSGKTTLALHIVAEAQKLDGIAAFIDAEHALDIGYARKLGVRTDDLLVSQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGA+D++VIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT 
Sbjct: 120 TGEQALEIAETLVRSGAIDVLVIDSVAALVPKAEIEGDMGDSHMGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            IS+S C ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIR++ S+K  + + G+
Sbjct: 180 IISKSNCCVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRKIASLKQGNDVIGS 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T+VKVVKNK+A PFK+VEFDI+YGEGIS  G+++DL V+  +VDKSGAWFS+  +R+GQ
Sbjct: 240 RTKVKVVKNKVAPPFKEVEFDILYGEGISREGDILDLAVEKGVVDKSGAWFSYGKERIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLL 331
           GRENS+I+L++N EI   I   L
Sbjct: 300 GRENSRIYLKQNPEICAEIREKL 322


>gi|15677302|ref|NP_274457.1| recombinase A [Neisseria meningitidis MC58]
 gi|254805226|ref|YP_003083447.1| RecA protein [Neisseria meningitidis alpha14]
 gi|296314218|ref|ZP_06864159.1| protein RecA [Neisseria polysaccharea ATCC 43768]
 gi|304387168|ref|ZP_07369412.1| recombination protein A [Neisseria meningitidis ATCC 13091]
 gi|12644335|sp|P56988|RECA_NEIMB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|7226686|gb|AAF41805.1| recA protein [Neisseria meningitidis MC58]
 gi|93117289|gb|ABE99562.1| RecA [Neisseria meningitidis]
 gi|254668768|emb|CBA06666.1| RecA protein [Neisseria meningitidis alpha14]
 gi|296839117|gb|EFH23055.1| protein RecA [Neisseria polysaccharea ATCC 43768]
 gi|304338772|gb|EFM04882.1| recombination protein A [Neisseria meningitidis ATCC 13091]
 gi|325130513|gb|EGC53268.1| protein RecA [Neisseria meningitidis OX99.30304]
 gi|325134574|gb|EGC57218.1| protein RecA [Neisseria meningitidis M13399]
 gi|325142629|gb|EGC65020.1| protein RecA [Neisseria meningitidis 961-5945]
 gi|325201857|gb|ADY97311.1| protein RecA [Neisseria meningitidis M01-240149]
 gi|325205801|gb|ADZ01254.1| protein RecA [Neisseria meningitidis M04-240196]
 gi|325208391|gb|ADZ03843.1| protein RecA [Neisseria meningitidis NZ-05/33]
          Length = 348

 Score =  366 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 221/351 (62%), Positives = 281/351 (80%), Gaps = 6/351 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKSKAL AAL+QI++ +GKGAIM++       E +EV+S+GSLGLD+ALG+GG P+GRIV
Sbjct: 4   DKSKALAAALAQIEKSFGKGAIMKM-DGSQQEENLEVISTGSLGLDLALGVGGLPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  +AQ QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDTG
Sbjct: 63  EIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG +D++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  I
Sbjct: 123 EQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGHI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR GSIK  + + GN+T
Sbjct: 183 KKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+GVK  I++KSGAW+S+ G ++GQG+
Sbjct: 243 RVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           +N +++L+EN E+A  I++ +R   G+            T+D+ D +  + 
Sbjct: 303 DNVRVWLKENPEVANEIDAKIRALNGV-----EMHITEGTQDETDGERPEE 348


>gi|89100714|ref|ZP_01173570.1| RecA [Bacillus sp. NRRL B-14911]
 gi|89084589|gb|EAR63734.1| RecA [Bacillus sp. NRRL B-14911]
          Length = 339

 Score =  366 bits (938), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 203/335 (60%), Positives = 264/335 (78%), Gaps = 2/335 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
            AL QI++ +GKG+IM+LG Q      I    SGSL LD+ALG+GG+PKGRIVEIYGPES
Sbjct: 1   MALKQIEKQFGKGSIMKLGEQTD--RKISTSPSGSLALDVALGVGGYPKGRIVEIYGPES 58

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTT+ALH IA+ Q  GG  AF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI 
Sbjct: 59  SGKTTVALHAIAEVQANGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIA 118

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           + LVRSGA+DI+VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I++S+ + 
Sbjct: 119 EALVRSGAIDILVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAINKSRTLA 178

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR  ++K  + + GN+T++KVVKN
Sbjct: 179 IFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNEMVGNKTKIKVVKN 238

Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317
           K+A PF+  E DIMYGEGIS  GE+ID+G +  IV KSG+W+S+  +RLGQGREN+K FL
Sbjct: 239 KVAPPFRVAEVDIMYGEGISKEGEIIDMGSELDIVQKSGSWYSYNEERLGQGRENAKQFL 298

Query: 318 RENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           +EN ++   I+  +R + GL  + LL E     ++
Sbjct: 299 KENPDLRLTIQKQIRDHYGLDEEKLLDENQDQDQE 333


>gi|299822960|ref|ZP_07054846.1| recombination protein A [Listeria grayi DSM 20601]
 gi|299816489|gb|EFI83727.1| recombination protein A [Listeria grayi DSM 20601]
          Length = 347

 Score =  365 bits (937), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 204/351 (58%), Positives = 272/351 (77%), Gaps = 4/351 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG      + +  VSSGSL +D+ALG+GG+P+GR
Sbjct: 1   MTDRQVALDQALKQIEKQFGKGSIMKLGEHSD--QNVSTVSSGSLAIDVALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPD
Sbjct: 59  IIEIYGPESSGKTTVALHAIAEVQTQGGTAAFIDAEHALDPTYAKNLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDILVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I VFINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   +K    + GN
Sbjct: 179 AINKSKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGTEVIGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T+VKVVKNK+A PF+  E DIMYGEGIS  GEL+D+  +  +V+KSG+W+S+  +R+GQ
Sbjct: 239 KTKVKVVKNKVAPPFRVAEVDIMYGEGISREGELLDMASEVDVVNKSGSWYSYNEERIGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           GREN+K FL+E+ E+ + I   +R+   +   +++  PA  T++  D  D 
Sbjct: 299 GRENAKQFLKEHAELLDEISKKVRREYDIDGTAVV--PAEETEETLDLLDE 347


>gi|70904886|gb|AAZ14021.1| RecA [Burkholderia cenocepacia]
          Length = 324

 Score =  365 bits (937), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 221/316 (69%), Positives = 275/316 (87%), Gaps = 1/316 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI
Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299

Query: 324 AENIESLLRQNAGLVA 339
           A  IE+ +R++ G+VA
Sbjct: 300 AREIENRIRESLGVVA 315


>gi|20522233|sp|Q92GE1|RECA_RICCN RecName: Full=Protein RecA; AltName: Full=Recombinase A
          Length = 343

 Score =  365 bits (937), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 222/343 (64%), Positives = 283/343 (82%), Gaps = 2/343 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+  DK +A+ AAL+QI++ YGKG++M+LG +  +   IE VS+GSLGLDIALGIGG PK
Sbjct: 1   MSNTDKERAIAAALAQIEKSYGKGSVMKLGQRPHV--DIEAVSTGSLGLDIALGIGGVPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA+KLGV++  L+ISQ
Sbjct: 59  GRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELIISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D L+RS  +D+I+IDSVAAL P++EIEG+MG++    QARLMSQALRKL
Sbjct: 119 PDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ + 
Sbjct: 179 TASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEEVI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G+QT+VKVVKNK++ PFK  +FDIMYG GIS  GE+IDLGVK  IV+KSG+WFS+K  R+
Sbjct: 239 GSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYKNVRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
           GQGREN K +L+E+ +I+  IE ++R+ +  + +  L +    
Sbjct: 299 GQGRENVKQYLKEHPQISNEIEKIIREKSSKITNINLDQTEEE 341


>gi|127512147|ref|YP_001093344.1| recombinase A [Shewanella loihica PV-4]
 gi|166220679|sp|A3QC87|RECA_SHELP RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|126637442|gb|ABO23085.1| recA protein [Shewanella loihica PV-4]
          Length = 353

 Score =  365 bits (937), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 212/350 (60%), Positives = 271/350 (77%), Gaps = 2/350 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL A L QI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P GRI
Sbjct: 5   ANKEKALSAVLGQIEKQFGKGSIMKLGENRSM--DVETISTGSLSLDVALGAGGLPLGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTL L  IA +Q+ G  CAF+DAEHALD IYA+KLGVD+ NLL SQPDT
Sbjct: 63  VEIYGPESSGKTTLTLEVIAAAQREGKVCAFIDAEHALDPIYAQKLGVDIDNLLCSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  +
Sbjct: 123 GEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           + +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD++ + GN+
Sbjct: 183 LKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDREEVIGNE 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGV   +++KSGAW+S+KG ++GQG
Sbjct: 243 TRVKVVKNKIAAPFKQAEFQILYGEGINRTGELVDLGVMHKLIEKSGAWYSYKGDKIGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           R N+  +L EN EI   I+  LR        ++ Q    +   D +  + 
Sbjct: 303 RANAGKYLVENPEIGAEIDQALRAMLLGGGQAVAQSATGDENVDLETGEV 352


>gi|309379707|emb|CBX21696.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 348

 Score =  365 bits (937), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 220/351 (62%), Positives = 280/351 (79%), Gaps = 6/351 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKSKAL AAL+QI++ +GKGAIM++       E +EV+S+GSLGLD+ALG+GG P+GRIV
Sbjct: 4   DKSKALAAALAQIEKSFGKGAIMKM-DGSQQEENLEVISTGSLGLDLALGVGGLPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  +AQ QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDTG
Sbjct: 63  EIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG +D++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  I
Sbjct: 123 EQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGHI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR GSIK  + + GN+ 
Sbjct: 183 KKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNEN 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+GVK  I++KSGAW+S+ G ++GQG+
Sbjct: 243 RVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           +N +++L+EN E+A  I++ +R   G+            T+D+ D +  + 
Sbjct: 303 DNVRVWLKENPEVANEIDAKIRALNGV-----EMHITEGTQDETDGERPEE 348


>gi|288799673|ref|ZP_06405132.1| protein RecA [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332921|gb|EFC71400.1| protein RecA [Prevotella sp. oral taxon 299 str. F0039]
          Length = 343

 Score =  365 bits (937), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 211/339 (62%), Positives = 272/339 (80%), Gaps = 7/339 (2%)

Query: 1   MDYRKEMNIVD-----KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGL 55
           M   KE +  +     K KAL+AA+++I++ +G+GAIM++G +    E I+V+ +GS+GL
Sbjct: 1   MAKEKEKSPQEGLQENKLKALQAAMAKIEKDFGRGAIMRMGDEN--IENIDVIPTGSIGL 58

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG+PKGRI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KL
Sbjct: 59  DLALGVGGYPKGRIIEIYGPESSGKTTLAIHAIAEAQKAGGVAAFIDAEHAFDRFYAEKL 118

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GV++  L ISQPDTGEQALEI D L+RS AVDI+VIDSVAALTP+ E++GDMG++  G+Q
Sbjct: 119 GVNINELWISQPDTGEQALEIADQLIRSSAVDIVVIDSVAALTPKKELDGDMGDNNVGLQ 178

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           ARLMSQALRKLTS+I+++    +FINQ+R KIGV +G  ETTTGGNALKFYSSVRLDIRR
Sbjct: 179 ARLMSQALRKLTSTINKTNTTCIFINQLRDKIGVTYGPSETTTGGNALKFYSSVRLDIRR 238

Query: 236 VGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
             +IKD D   GN+TRVKVVKNK+A PFK+ EFDIMYGEGIS  GE+IDLGV+ +I+ KS
Sbjct: 239 GTAIKDGDEPIGNETRVKVVKNKVAPPFKKAEFDIMYGEGISKIGEIIDLGVEHNIITKS 298

Query: 296 GAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
           G+WFS+K  +LGQGR+ +K  L++N E+ E IE L+++ 
Sbjct: 299 GSWFSYKESKLGQGRDAAKRLLKDNPELCEEIEGLIKEA 337


>gi|325916032|ref|ZP_08178322.1| RecA protein [Xanthomonas vesicatoria ATCC 35937]
 gi|325537708|gb|EGD09414.1| RecA protein [Xanthomonas vesicatoria ATCC 35937]
          Length = 344

 Score =  365 bits (937), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 223/349 (63%), Positives = 282/349 (80%), Gaps = 10/349 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AALSQI++ +GKG++M++G    + E +E++ +GSL LDIALGIGG PKGR+V
Sbjct: 4   NKKRALSAALSQIEKQFGKGSVMRMGD--RVIEAVEIIPTGSLMLDIALGIGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAQCQKLGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS +VDI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSSSVDIVVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  ++VFINQ+RMKIGVM    SPE TTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 182 KRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELID+GV+A +VDK+GAW+S+  +R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVDKAGAWYSYGDERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           G++N++ +LR+N ++A  +E+ LR+           E      DDA+K+
Sbjct: 302 GKDNARGYLRDNPQVAAKLEAELREKF------QPAEAPREAGDDAEKE 344


>gi|283458479|ref|YP_003363105.1| RecA/RadA recombinase [Rothia mucilaginosa DY-18]
 gi|283134520|dbj|BAI65285.1| RecA/RadA recombinase [Rothia mucilaginosa DY-18]
          Length = 367

 Score =  365 bits (937), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 208/347 (59%), Positives = 269/347 (77%), Gaps = 2/347 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           ++KALEA ++QI + YGKGA+M+LG +       EV+S+G++ LD ALGIGG P+GR++E
Sbjct: 18  RAKALEAVMAQIDKNYGKGAVMRLGDKE--ITKTEVISTGAIALDAALGIGGLPRGRVIE 75

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH +A  QK GG  AF+DAEHALD IYA KLGVD+  LL+SQPDTGE
Sbjct: 76  IYGPESSGKTTVALHAVANVQKAGGVAAFIDAEHALDPIYAAKLGVDIDQLLVSQPDTGE 135

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DMLV SGAVDI+V+DSVAAL PRAEIEGDMG+S  G+QARLMSQALRK+T  +S
Sbjct: 136 QALEIMDMLVGSGAVDIVVVDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKITGRLS 195

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
            +    +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+DIRR+ ++KD  +  GN+TR
Sbjct: 196 ATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDIRRIETLKDGANPIGNRTR 255

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
            K+VKNKMA PFKQ EFDI+YGEGIS  G ++DL V+  IV KSGAWF++ G++LGQGRE
Sbjct: 256 AKIVKNKMAPPFKQAEFDILYGEGISVEGGILDLAVENDIVKKSGAWFTYDGEQLGQGRE 315

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           N +  L++N E+ E ++  +    G++ +   ++ A  ++ +   D+
Sbjct: 316 NVRKLLKDNPELTEELQYKVLVKLGIIEEEADEQVAAESEGNDPLDE 362


>gi|291618587|ref|YP_003521329.1| RecA [Pantoea ananatis LMG 20103]
 gi|291153617|gb|ADD78201.1| RecA [Pantoea ananatis LMG 20103]
          Length = 356

 Score =  365 bits (937), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 216/353 (61%), Positives = 281/353 (79%), Gaps = 4/353 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPE+SGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPEASGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+ FGEL+DLGVK  +++K+GAW+S+KG ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQIMYGEGINTFGELVDLGVKHKLIEKAGAWYSYKGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N+  FL+EN  +AE ++  LR+      D  +        +D +K  ++  E
Sbjct: 304 ANAGNFLKENAAVAEELDIKLREMLLNGGDQNIAADVAG--NDVEKAASEANE 354


>gi|157804130|ref|YP_001492679.1| recombinase A [Rickettsia canadensis str. McKiel]
 gi|166220673|sp|A8EZW1|RECA_RICCK RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|157785393|gb|ABV73894.1| recombinase A [Rickettsia canadensis str. McKiel]
          Length = 343

 Score =  365 bits (937), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 224/343 (65%), Positives = 285/343 (83%), Gaps = 2/343 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+  DK +A+ AAL+QI++ YGKG++M+LG + +I   IE VS+GSLGLD+ALGIGG PK
Sbjct: 1   MSNTDKERAIAAALAQIEKSYGKGSVMKLGQRPNI--DIEAVSTGSLGLDMALGIGGVPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA+KLGV++  L+ISQ
Sbjct: 59  GRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELIISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEITD L+RSG +D+++IDSVAAL P++EIEG+MG++    QARLMSQALRKL
Sbjct: 119 PDTGEQALEITDTLIRSGGIDMVIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+SISR+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ + 
Sbjct: 179 TASISRTNCIAVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEEVI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G+QT+VKVVKNK++ PFK  +FDIMYG GIS  GE+IDLGVK  IV+KSG+WFS+   R+
Sbjct: 239 GSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYNNVRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
           GQGREN K +L+E+ +IA  IE ++R+ +  + +  L +    
Sbjct: 299 GQGRENVKQYLKEHPQIANEIEKIIREKSSKITNMNLDQMEEE 341


>gi|299769713|ref|YP_003731739.1| recombinase A [Acinetobacter sp. DR1]
 gi|298699801|gb|ADI90366.1| recombinase A [Acinetobacter sp. DR1]
          Length = 348

 Score =  365 bits (937), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 221/350 (63%), Positives = 275/350 (78%), Gaps = 10/350 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL+AALSQI++ +GK  +M+LG      + +E VS+GSL LDIALGIGG PKGRIV
Sbjct: 4   NKSKALQAALSQIEKQFGKNTVMRLGDNT--VQAVEAVSTGSLTLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ L  IAQ QKTGGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD G
Sbjct: 62  EIYGPESSGKTTMTLQAIAQCQKTGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T + 
Sbjct: 122 EQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNA 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G +K+ D I G++T
Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PF++  F I+YG+G +  GEL+DL V+  IV K+GAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKMAPPFREAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
            N      EN ++A  IE  +R+         L     NT    D+++ D
Sbjct: 302 NNVIRHFEENPQMAGEIERNIREQ--------LLTTGTNTAQVEDEEEVD 343


>gi|309790541|ref|ZP_07685098.1| recA protein [Oscillochloris trichoides DG6]
 gi|308227414|gb|EFO81085.1| recA protein [Oscillochloris trichoides DG6]
          Length = 356

 Score =  365 bits (937), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 206/348 (59%), Positives = 271/348 (77%), Gaps = 1/348 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL AA++QI R +GKG+IM++G   S    IEV+ +G++ LDIALG+GG P+GR+
Sbjct: 5   PEKEKALAAAMTQIDRKFGKGSIMKMGEASSRL-AIEVIPTGAIALDIALGVGGLPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
            EI+GPESSGKTTLA H IA++QK GG CAF+DAEHA D IYA++ GV + +LL+SQPDT
Sbjct: 64  TEIFGPESSGKTTLAQHIIAEAQKMGGVCAFIDAEHAFDPIYAQRCGVKIDDLLVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + LVRS A+D+IVIDSVAAL PRAEIEGDMG+SLPG+QARLMSQALRKL+ +
Sbjct: 124 GEQALEICETLVRSNALDVIVIDSVAALVPRAEIEGDMGDSLPGLQARLMSQALRKLSGA 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I++S+ +++F+NQ+RMKIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++K      G +
Sbjct: 184 INKSRTVVIFLNQLRMKIGVMFGSPETTTGGQALKFYASVRLDIRRIETLKQGQEAIGAR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            RVKV+KNK+A PF+Q EFDI+  EGIS  G ++D+GV+  I+ KSGAWF     RLGQG
Sbjct: 244 ARVKVIKNKVAPPFRQAEFDILANEGISREGNIMDIGVEMGIIRKSGAWFYLGEDRLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           REN + FL+EN  + + IE L++  A   A+++    + + +   D+D
Sbjct: 304 RENVREFLKENKALTDEIERLVKAQAISTANAIALPSSGDDEAAEDED 351


>gi|302877752|ref|YP_003846316.1| recA protein [Gallionella capsiferriformans ES-2]
 gi|302580541|gb|ADL54552.1| recA protein [Gallionella capsiferriformans ES-2]
          Length = 358

 Score =  365 bits (937), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 219/336 (65%), Positives = 279/336 (83%), Gaps = 1/336 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL AALSQI++ +GKG+IM+LG    + + I+VVS+GSLGLDIALG+GG P+GR++
Sbjct: 4   NKSKALMAALSQIEKQFGKGSIMRLGEN-EVAQDIQVVSTGSLGLDIALGVGGLPRGRVI 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLAL  IA+ QK GGT AF+DAEHALD  YA+KLGV +++LLISQPD G
Sbjct: 63  EIYGPESSGKTTLALQVIAEMQKLGGTAAFIDAEHALDPQYAQKLGVKVEDLLISQPDNG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS +VD++VIDSVAALTP+AEIEG+MG+S  G+ ARLMSQALRKLT++I
Sbjct: 123 EQALEITDMLVRSASVDVVVIDSVAALTPKAEIEGEMGDSQMGLHARLMSQALRKLTANI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK  D + GN+T
Sbjct: 183 KRSNTLVIFINQLRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKKGDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK+  FDI+YGEG S  GE+IDLGV   +++KSG+W+S+ G+++GQG+
Sbjct: 243 RVKVVKNKVAPPFKEALFDILYGEGTSREGEIIDLGVLHKLIEKSGSWYSYNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           +N + FLR   E+A  IE+ +R   G+      + P
Sbjct: 303 DNVREFLRTRSEMAFEIENKIRTLVGVALIEAGESP 338


>gi|221313893|ref|ZP_03595698.1| recombinase A [Bacillus subtilis subsp. subtilis str. NCIB 3610]
          Length = 347

 Score =  365 bits (937), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 205/335 (61%), Positives = 269/335 (80%), Gaps = 3/335 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG +      I  V SGSL LD ALGIGG+P+GR
Sbjct: 1   MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTR--ISTVPSGSLALDTALGIGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT+ALH IA+ Q+   T AF+DAEHALD +YA+KLGV+++ LL+SQPD
Sbjct: 59  IIEVYGPESSGKTTVALHAIAEVQQQ-RTGAFIDAEHALDPVYAQKLGVNIEELLLSQPD 117

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDI+V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 118 TGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 177

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K  + + GN
Sbjct: 178 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGN 237

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK+A PF+  E DIMYGEGIS  GE+IDLG +  IV KSG+W+S++ +RLGQ
Sbjct: 238 KTKIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQ 297

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343
           GREN+K FL+EN +I   I+  +R++ GL  + ++
Sbjct: 298 GRENAKQFLKENKDIMLMIQEQIREHYGLDNNGVV 332


>gi|288940829|ref|YP_003443069.1| recA protein [Allochromatium vinosum DSM 180]
 gi|288896201|gb|ADC62037.1| recA protein [Allochromatium vinosum DSM 180]
          Length = 347

 Score =  365 bits (937), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 228/347 (65%), Positives = 286/347 (82%), Gaps = 3/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL AAL+QI++ +GKG++M++G  G++   IE +S+GSLGLD+ALGIGG PKGR++
Sbjct: 4   NRKKALAAALTQIEKQFGKGSVMRMGDVGAVRN-IEAISTGSLGLDLALGIGGVPKGRVI 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+SQK GGT AFVDAEHALD +YA KLGV++ +LL+SQPDTG
Sbjct: 63  EIYGPESSGKTTLTLHIIAESQKLGGTAAFVDAEHALDPVYAEKLGVNMTDLLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSGAVD++V+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDMLVRSGAVDVVVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR GSIK  D + GN+T
Sbjct: 183 KRSNCCVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGSIKKGDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF+Q EFDI+YG+GIS  GE+IDLGV    +DKSGAW+S+ G R+GQG+
Sbjct: 243 KVKVVKNKVAPPFRQAEFDILYGQGISREGEIIDLGVAEGFIDKSGAWYSYDGNRIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           +N + FL EN  IA+ IE+ +R    L+    ++ PA     +  +D
Sbjct: 303 DNVRNFLCENPGIAQAIEARIRDK--LLPKGGVEAPAEADVPEPSED 347


>gi|15836728|ref|NP_297416.1| recombinase A [Xylella fastidiosa 9a5c]
 gi|11387033|sp|Q9PH23|RECA_XYLFA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|9104907|gb|AAF82936.1|AE003866_1 recombination protein RecA [Xylella fastidiosa 9a5c]
          Length = 347

 Score =  365 bits (937), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 221/354 (62%), Positives = 286/354 (80%), Gaps = 13/354 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL  ALSQI++ +GKG++M++G    + E +E + +GSL LD+ALGIGG PKGR+V
Sbjct: 4   NKKRALSVALSQIEKQFGKGSVMRMGD--RVIEAVEAIPTGSLMLDLALGIGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAQCQKKGGTAAFIDAEHALDPIYAGKLGVNVDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG++DI+VIDSVAALTPRAEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSGSIDIMVIDSVAALTPRAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  +++FINQ+RMKIGVM    SPETTTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 182 KRSNTLVIFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELI++GV+A +V+K+GAW+S+ G+R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIEMGVEAKLVEKAGAWYSYGGERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           G++N++ +LREN  +A  +E+ LR+           EP   ++++ D+D  ++ 
Sbjct: 302 GKDNARGYLRENPHLAAKLEADLREKF---------EPTELSREEGDEDTLEDT 346


>gi|289669642|ref|ZP_06490717.1| recombinase A [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 344

 Score =  365 bits (937), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 221/352 (62%), Positives = 284/352 (80%), Gaps = 13/352 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AALSQI++ +GKG++M++G    + E +EV+ +GSL LDIALGIGG PKGR+V
Sbjct: 4   NKKRALSAALSQIEKQFGKGSVMRMGD--RVIEAVEVIPTGSLMLDIALGIGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAQCQKLGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS +VDI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSSSVDIVVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  ++VFINQ+RMKIGVM    SPE TTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 182 KRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELI++GV+A +VDK+GAW+S+  +R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIEMGVEAKLVDKAGAWYSYGDERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           G++N++ +LR+N ++A  +E+ LR+           +PA   ++  D ++ +
Sbjct: 302 GKDNARTYLRDNPQVAVRLEAELREKF---------QPAEAPREAGDDEEKE 344


>gi|167032243|ref|YP_001667474.1| recombinase A [Pseudomonas putida GB-1]
 gi|189039602|sp|B0KT20|RECA_PSEPG RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166858731|gb|ABY97138.1| recA protein [Pseudomonas putida GB-1]
          Length = 355

 Score =  365 bits (937), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 211/325 (64%), Positives = 268/325 (82%), Gaps = 2/325 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI+R +GKGA+M++G Q    +GI  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKRALAAALGQIERQFGKGAVMRMGDQER--QGIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAEAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK++ PF+Q EF I+YG+GI   GE+IDLGV   +V+KSGAW++++G ++GQG+
Sbjct: 242 RVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYAYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
            N+  +L EN  I   IE  +R+  
Sbjct: 302 ANAAKYLAENPAIGAEIEKQIREKL 326


>gi|56477358|ref|YP_158947.1| recombinase A [Aromatoleum aromaticum EbN1]
 gi|76363319|sp|Q5P3R8|RECA_AROAE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|56313401|emb|CAI08046.1| RecA [Aromatoleum aromaticum EbN1]
          Length = 346

 Score =  365 bits (937), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 221/327 (67%), Positives = 276/327 (84%), Gaps = 1/327 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           SQI++ +GKG+IM++G  G+I   I+ VS+GSLGLDIALG+GG P+GR+VEIYGPESSGK
Sbjct: 14  SQIEKQFGKGSIMRMGD-GTIERDIQTVSTGSLGLDIALGLGGLPRGRVVEIYGPESSGK 72

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++++LLISQPDTGEQALEI DML
Sbjct: 73  TTLTLQVIAEMQKLGGTAAFIDAEHALDVGYAEKLGVNIQDLLISQPDTGEQALEIADML 132

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSG V+I+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT++I R+  +++FI
Sbjct: 133 VRSGGVEIVVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTANIKRTNTLVIFI 192

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK  D + G++TR KVVKNK+A
Sbjct: 193 NQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAIKKGDEVVGSETRCKVVKNKVA 252

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
            PFK+  FDI+YGEGIS  GE+IDLGV+  IVDKSGAW+++KG+++GQG++NS+ FLR N
Sbjct: 253 PPFKEAHFDILYGEGISREGEIIDLGVQHKIVDKSGAWYAYKGEKIGQGKDNSREFLRAN 312

Query: 321 IEIAENIESLLRQNAGLVADSLLQEPA 347
             +A  IE+ +R   GL A ++   PA
Sbjct: 313 PALAREIENKVRAQVGLNAMAVEAAPA 339


>gi|190571327|ref|YP_001975685.1| recA protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
 gi|213018723|ref|ZP_03334531.1| recA protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
 gi|238058621|sp|B3CMC0|RECA_WOLPP RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|190357599|emb|CAQ55040.1| recA protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
 gi|212995674|gb|EEB56314.1| recA protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
          Length = 355

 Score =  365 bits (937), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 217/333 (65%), Positives = 275/333 (82%), Gaps = 2/333 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M +  E    DK KAL+ A+SQI++ +GKGAIM+L  + +  E I+ +S+GS+ LD ALG
Sbjct: 1   MAHNPEERNNDKQKALDNAISQIEKAFGKGAIMKL--KQNPVEKIDTISTGSIALDSALG 58

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG PKGRI+EI+GPESSGKTTLALH IA++QK GG CAF+DAEHALD IYARKLGV   
Sbjct: 59  VGGLPKGRIIEIFGPESSGKTTLALHVIAEAQKKGGLCAFIDAEHALDVIYARKLGVKTD 118

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +L+ISQPDTGEQAL I + LV S AVD+IVIDSVAALTPRAEIEGDMG+   G+QARL+S
Sbjct: 119 DLVISQPDTGEQALHIVEYLVCSSAVDVIVIDSVAALTPRAEIEGDMGDQHMGLQARLLS 178

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
             LRKLTS +S++ CIL+FINQ+RMKIGV++G+PETTTGGNALKFY+S+RLDIR+VG+IK
Sbjct: 179 HGLRKLTSVVSKANCILIFINQIRMKIGVVYGNPETTTGGNALKFYTSIRLDIRKVGAIK 238

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           DK++ITGN+TRVKVVKNK+A PF++ +FDIMY EGIS  GE+ID+G K  +++K+GA++S
Sbjct: 239 DKENITGNETRVKVVKNKVAPPFREAKFDIMYNEGISKLGEIIDIGAKLGVLEKAGAYYS 298

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           +   RLGQGREN K +L+ N EIA  IE+ +R 
Sbjct: 299 YNNTRLGQGRENVKSYLKANKEIASEIETKIRD 331


>gi|227873744|ref|ZP_03991974.1| recombination protein RecA [Oribacterium sinus F0268]
 gi|227840424|gb|EEJ50824.1| recombination protein RecA [Oribacterium sinus F0268]
          Length = 375

 Score =  365 bits (936), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 206/348 (59%), Positives = 274/348 (78%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AALS+I++  GKG++M+LG  G + + I VV +GSL +DIALG GGFP+GRI+
Sbjct: 18  EKLKALDAALSKIEKDCGKGSVMKLGDSG-VNKDISVVPTGSLSVDIALGAGGFPRGRII 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH +A+ QK GG  AF+DAEHALD  YA+ +GVD+ NL ++QPD+G
Sbjct: 77  EIYGPESSGKTTLALHAVAEVQKRGGIAAFIDAEHALDPRYAQAIGVDIDNLYVAQPDSG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL+I + +VRSGA+DI+V+DSVAAL P+AEI+G+MG+S  G+QARLMS ALRKLT+ I
Sbjct: 137 EQALDIVETMVRSGAMDILVVDSVAALVPKAEIDGEMGDSHVGLQARLMSMALRKLTAII 196

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQ 249
           ++S CIL+FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+DIR+  SIK  D   +G +
Sbjct: 197 AKSNCILIFINQLREKVGVMFGNPETTTGGRALKFYASVRVDIRKGESIKTGDGDFSGAR 256

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           T+VK+ KNK+A PFK  EFDI +G GIS  GE++DL V+  +++KSGAWF++KG ++GQG
Sbjct: 257 TKVKISKNKIAPPFKNAEFDISFGSGISKEGEILDLAVEKKMIEKSGAWFAYKGDKIGQG 316

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           REN+K FL+ +  I  ++E  LR+  GL  D  L+E      +D D D
Sbjct: 317 RENAKAFLKSHPRIMADLEIQLRKEYGLKEDPYLEEVLAFVPEDEDMD 364


>gi|47678158|emb|CAF21842.1| RecA recombinase [Enterococcus sulfureus]
          Length = 344

 Score =  365 bits (936), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 195/329 (59%), Positives = 262/329 (79%), Gaps = 2/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ +GKGA+M+LG +  + + I  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKAALDAALKKIEKNFGKGAVMKLGEK--VDQQISTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA  LGV++ +LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPKYASNLGVNIDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVD++V+DSVAAL PRAEI+G+MG S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDMVVVDSVAALVPRAEIDGEMGASHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATIRLEVRRAEQLKSGTDIIGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++K+VKNK+A PF+  E DIMYGEGIS  GEL+D+  +  I+DKSGAW+S+KG R+GQGR
Sbjct: 242 KIKIVKNKVAPPFRIAEVDIMYGEGISQVGELLDMAAEMDIIDKSGAWYSYKGDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           EN K +++E+ E+ E + + +R   G+  
Sbjct: 302 ENVKQYMKEHPEMVEEVSARVRDAYGIGT 330


>gi|58584684|ref|YP_198257.1| recombinase A [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|76363347|sp|Q5GSK9|RECA_WOLTR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|58419000|gb|AAW71015.1| RecA recombinase [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 355

 Score =  365 bits (936), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 216/347 (62%), Positives = 279/347 (80%), Gaps = 2/347 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M    E    D+ KAL+ A+SQI++ +GKGAIM+L  + +  E I+ +S+GS+ LD ALG
Sbjct: 1   MASNPEEKSNDRQKALDNAISQIEKAFGKGAIMKL--KQNPVEKIDTISTGSIALDSALG 58

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG PKGRIVEI+GPESSGKTTLALH IA++QK GG CAF+DAEHALD +YARKLGV+  
Sbjct: 59  VGGLPKGRIVEIFGPESSGKTTLALHVIAEAQKKGGLCAFIDAEHALDVMYARKLGVNTD 118

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL+ISQPDTGEQAL I + LV S AVD+IV+DSVAALTPRAEIEGDMG+   G+QARL+S
Sbjct: 119 NLVISQPDTGEQALHIVEYLVCSSAVDVIVVDSVAALTPRAEIEGDMGDQHVGLQARLLS 178

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
             LRKLTS++S++ CIL+FINQ+RMKIGV++G+PETTTGGNALKFY+SVRLDIR+VG+IK
Sbjct: 179 HGLRKLTSAVSKANCILIFINQIRMKIGVVYGNPETTTGGNALKFYTSVRLDIRKVGAIK 238

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           DK+SI GN+TRVKVVKNK+A PF++ +FDIMY EG+S  GE+ID+G K  +++K+GA++S
Sbjct: 239 DKESIKGNETRVKVVKNKVAPPFREAKFDIMYNEGVSKLGEIIDIGAKLGVLEKAGAYYS 298

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           +   RLGQGREN K + + N E+A  +E+ +R   G   +S+  E  
Sbjct: 299 YNNTRLGQGRENVKNYFKANKEVANEVEAKIRDLLGNSDNSITMEEE 345


>gi|296837365|gb|ADH59541.1| DNA recombinase [Burkholderia stabilis]
          Length = 319

 Score =  365 bits (936), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 220/317 (69%), Positives = 276/317 (87%), Gaps = 1/317 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRL+IRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYASVRLEIRRIGSIKKIDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESLLRQNAGLVA 339
           IA  IE+ +R++ G+VA
Sbjct: 300 IAREIENRIRESLGVVA 316


>gi|225936950|emb|CAJ82772.1| recA recombinase [Enterococcus gilvus]
          Length = 348

 Score =  365 bits (936), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 199/342 (58%), Positives = 265/342 (77%), Gaps = 2/342 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AA+ +I++ YGKG+IM+LG +  + + I  + SGSL LD+ALG+GG+P+GRIV
Sbjct: 4   DRKAALDAAMKKIEKNYGKGSIMKLGEK--VDQKISTIPSGSLALDVALGVGGYPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA++LGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKHGGTAAFIDAEHALDPQYAQRLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDIIVIDSVAAL PRAEI+G+MG++  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIIVIDSVAALVPRAEIDGEMGDAHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I VFINQ+R K+GVMFG+PE T GG ALKFY++VRL++RR   +K+   I GN+T
Sbjct: 182 NKTKTIAVFINQIREKVGVMFGNPEVTPGGRALKFYATVRLEVRRAEQLKNGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG GIS  GEL+D+ V+  I+DKSGAW+ +K  R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGLGISQEGELLDMAVEQDIIDKSGAWYGYKEDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           EN+K +L ++ E+   + + +R   G+  +    E     ++
Sbjct: 302 ENAKKYLADHPEMMAEVATRVRAAYGIGEEGESVEDEAGQEE 343


>gi|288924592|ref|ZP_06418529.1| protein RecA [Prevotella buccae D17]
 gi|288338379|gb|EFC76728.1| protein RecA [Prevotella buccae D17]
          Length = 349

 Score =  365 bits (936), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 206/323 (63%), Positives = 267/323 (82%), Gaps = 2/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+AA+++I++ +GKG+IM++G +    E +EV+ +GS+ LD+ALG+GG+P+GRI+E
Sbjct: 23  KLKALQAAMAKIEKDFGKGSIMRMGDEQ--IENVEVIHTGSIALDVALGVGGYPRGRIIE 80

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD GE
Sbjct: 81  IYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDNGE 140

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RS A+DI+VIDSVAALTP+ EIEGDMG+S  G+QARLMSQALRKLTS+IS
Sbjct: 141 QALEIADQLIRSSAIDILVIDSVAALTPKKEIEGDMGDSAVGLQARLMSQALRKLTSTIS 200

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR+  SIKD D I GNQ R
Sbjct: 201 KTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRKTTSIKDGDQIIGNQVR 260

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV+KNK+A PF++ EF+I +GEGIS  GE++DLGV+  IV KSG+WFS+ G +LGQGR+
Sbjct: 261 VKVIKNKVAPPFRKAEFEITFGEGISKVGEILDLGVEYDIVKKSGSWFSYNGSKLGQGRD 320

Query: 312 NSKIFLRENIEIAENIESLLRQN 334
            +K  L++N E+ E +E+ +++ 
Sbjct: 321 ATKNLLKDNPELCEELEAKIKEA 343


>gi|296117706|ref|ZP_06836290.1| protein RecA [Corynebacterium ammoniagenes DSM 20306]
 gi|295969437|gb|EFG82678.1| protein RecA [Corynebacterium ammoniagenes DSM 20306]
          Length = 380

 Score =  365 bits (936), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 216/382 (56%), Positives = 278/382 (72%), Gaps = 22/382 (5%)

Query: 1   MDYRKE----MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLD 56
           M  +K+        D+ KAL+AA+S I++ +GKGA+M+LG +      I+ +SSG+  +D
Sbjct: 1   MAAKKKSTATKPGEDRKKALDAAMSMIEKDFGKGAVMRLGEENR--PPIQAISSGNTAID 58

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
           IALGIGGFP+GR+VE+YGPESSGKTT+ALH IA++QKTGG  AF+DAEHALD  YAR LG
Sbjct: 59  IALGIGGFPRGRVVEVYGPESSGKTTVALHAIAEAQKTGGIAAFIDAEHALDPEYARLLG 118

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           VD  NLL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAALTP+AEIEG+MG+S  G+QA
Sbjct: 119 VDTDNLLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALTPKAEIEGEMGDSHVGLQA 178

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           RLMSQALRK+T ++  S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR DIRR+
Sbjct: 179 RLMSQALRKMTGALYNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRI 238

Query: 237 GSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
            ++KD     GN+TR+K+VKNK++ PFK  EFDIMYGEGIS    +IDLGV+   + KSG
Sbjct: 239 QTLKDGQDAIGNRTRIKIVKNKVSPPFKIAEFDIMYGEGISRESSIIDLGVEHGFIKKSG 298

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL----------------VAD 340
           +WF+++G +LGQG+E ++ FL+ + E+A+ IE  + Q  G+                 A+
Sbjct: 299 SWFTYEGDQLGQGKEKARNFLKNSPELADEIEKKIFQKLGVGEYAKTSGEEAAMDVPGAE 358

Query: 341 SLLQEPAINTKDDADKDDTDNV 362
             L +       + D DD D  
Sbjct: 359 DPLTDDPAGFVPNVDFDDEDEE 380


>gi|197259604|gb|ACH56443.1| RecA type I [Propionibacterium acnes]
          Length = 314

 Score =  365 bits (936), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 204/316 (64%), Positives = 255/316 (80%), Gaps = 2/316 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL  AL QI++ +GKG+IM+LG Q ++   I  + +GS+ LD+ALG+GG P+GRIVEIYG
Sbjct: 1   ALATALQQIEKQHGKGSIMRLGEQETV--KIAAIPTGSVALDVALGVGGLPRGRIVEIYG 58

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTT+ALH IA +Q  GG CAF+DAEHALD  YARKLGVD  +LL+SQPD GEQAL
Sbjct: 59  PESSGKTTVALHAIANAQAEGGICAFIDAEHALDPEYARKLGVDTDSLLVSQPDNGEQAL 118

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EI D LVRSGA+++IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +++ + 
Sbjct: 119 EIADTLVRSGALELIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGALNAAG 178

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
              +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RRV ++KD   + GN+TRVKV
Sbjct: 179 TTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRVETLKDGSEMVGNRTRVKV 238

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
            KNK+A PFKQ EFDI+YG+GIS  G LID+GV   I+ KSG+WFS+  ++LGQG+EN +
Sbjct: 239 AKNKVAPPFKQAEFDILYGQGISREGSLIDMGVDCGIITKSGSWFSYNNEQLGQGKENVR 298

Query: 315 IFLRENIEIAENIESL 330
            FLR N ++A  IE  
Sbjct: 299 KFLRGNPDVANEIEDK 314


>gi|157326887|gb|ABV44556.1| RecA [Burkholderia cenocepacia]
          Length = 314

 Score =  365 bits (936), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 221/315 (70%), Positives = 274/315 (86%), Gaps = 1/315 (0%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           + +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL 
Sbjct: 1   KQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLT 59

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG
Sbjct: 60  LQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSG 119

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           ++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+R
Sbjct: 120 SIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIR 179

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF+
Sbjct: 180 MKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFR 239

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           +  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA
Sbjct: 240 EAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIA 299

Query: 325 ENIESLLRQNAGLVA 339
             IE+ +R++ G+VA
Sbjct: 300 REIENRIRESLGVVA 314


>gi|260578890|ref|ZP_05846795.1| recombinase A [Corynebacterium jeikeium ATCC 43734]
 gi|258602980|gb|EEW16252.1| recombinase A [Corynebacterium jeikeium ATCC 43734]
          Length = 375

 Score =  365 bits (936), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 208/349 (59%), Positives = 272/349 (77%), Gaps = 4/349 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+SKALE A++QI++ +GKGAIM+LG        I+ +SSGS+ ++ ALGIGGFP+GR+V
Sbjct: 14  DRSKALELAMAQIEKDFGKGAIMRLGDDTR--PPIQAISSGSIAINAALGIGGFPRGRVV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA++Q+ GG  AFVDAEHALD  YAR LGVD   LL+SQPDTG
Sbjct: 72  EIYGPESSGKTTVALHAIAEAQRAGGIAAFVDAEHALDPEYARALGVDTDALLVSQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DIIV+DSVAALTP+AEI+GDMG+S  G+QARLMSQALRK+T ++
Sbjct: 132 EQALEIADMLIRSGAIDIIVVDSVAALTPKAEIDGDMGDSHVGLQARLMSQALRKMTGAL 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR DIRR+ ++KD   + GN+T
Sbjct: 192 YQTGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRIQALKDGQDVVGNRT 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK++ PFK  EFDI+YGEGIS  G +IDLGV+  ++ KSG+WF++ G +LGQG+
Sbjct: 252 RLKVVKNKVSPPFKIAEFDILYGEGISREGSIIDLGVETGLIKKSGSWFTYDGDQLGQGK 311

Query: 311 ENSKIFLRENIEIAENIESLL-RQ-NAGLVADSLLQEPAINTKDDADKD 357
           E ++ FL+ N +++  +E  + R+   G  A    ++      D  D+D
Sbjct: 312 EKAREFLKNNRDLSAELEDRIARELKIGPYAKMKDEQTEEAAGDQMDED 360


>gi|57340309|gb|AAW50125.1| RecA [Burkholderia ubonensis]
          Length = 319

 Score =  365 bits (936), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 220/316 (69%), Positives = 274/316 (86%), Gaps = 1/316 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEATEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI
Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299

Query: 324 AENIESLLRQNAGLVA 339
           A  IE+ +R++ G+ A
Sbjct: 300 AREIENRIRESLGVAA 315


>gi|90408944|ref|ZP_01217078.1| putative RecA protein [Psychromonas sp. CNPT3]
 gi|90309945|gb|EAS38096.1| putative RecA protein [Psychromonas sp. CNPT3]
          Length = 351

 Score =  365 bits (936), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 224/341 (65%), Positives = 278/341 (81%), Gaps = 8/341 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG  G+    IE VS+GSLGLDIALGIGG P GR+V
Sbjct: 6   NKDKALAAALGQIEKQFGKGSIMRLGD-GNAMMDIEAVSTGSLGLDIALGIGGLPCGRVV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAF+DAEHALD IYA+KLGV++  LLISQPDTG
Sbjct: 65  EIYGPESSGKTTLTLQVIAEAQKKGKTCAFIDAEHALDPIYAKKLGVNIDELLISQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGAV ++VIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT SI
Sbjct: 125 EQALEICDMLIRSGAVGVVVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTGSI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D I GN+T
Sbjct: 185 KQTNTMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKNGDEIVGNET 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EF I+YG GI+ FGELIDLGVK  +V+K+G+W+S++G ++GQG+
Sbjct: 245 RVKVVKNKVSPPFKQAEFQILYGHGINRFGELIDLGVKNDLVEKAGSWYSYQGVKIGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
            N+     EN ++A  +E  LR       D LL +P  + K
Sbjct: 305 SNACKHFLENPKLAAELELKLR-------DILLPKPEEDEK 338


>gi|257417292|ref|ZP_05594286.1| RecA recombinase [Enterococcus faecalis AR01/DG]
 gi|257159120|gb|EEU89080.1| RecA recombinase [Enterococcus faecalis ARO1/DG]
          Length = 348

 Score =  365 bits (936), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 196/342 (57%), Positives = 265/342 (77%), Gaps = 2/342 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ +GKG+IM+LG +    + I  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKVALDAALKKIEKNFGKGSIMKLGEKAD--QKISTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT++LH IA+ Q+ GGT AF+DAEHALD  YA KLGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVSLHAIAEVQRNGGTAAFIDAEHALDPQYAEKLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGA+DI+VIDSVAAL PRAEI+G+MG S  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAIDIVVIDSVAALVPRAEIDGEMGASHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY++VRL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKQGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+ V+  ++ KSGAW+ +K +R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGQGISQEGELLDMAVEKDLISKSGAWYGYKEERIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           EN+K ++ ++ E+   +  L+R   G+   S + E A   ++
Sbjct: 302 ENAKQYMADHPEMMAEVSKLVRDAYGIGDGSTIIEEAEGQEE 343


>gi|157964909|ref|YP_001499733.1| recombinase A [Rickettsia massiliae MTU5]
 gi|166918715|sp|A8F2Q0|RECA_RICM5 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|157844685|gb|ABV85186.1| RecA [Rickettsia massiliae MTU5]
          Length = 343

 Score =  365 bits (936), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 223/343 (65%), Positives = 284/343 (82%), Gaps = 2/343 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+  DK +A+ AAL+QI++ YGKG++M+LG +  +   IE VS+GSLGLDIALGIGG PK
Sbjct: 1   MSNTDKERAIAAALAQIEKSYGKGSVMKLGQRPHV--DIEAVSTGSLGLDIALGIGGIPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA+KLGV++  L+ISQ
Sbjct: 59  GRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELIISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++    QARLMSQALRKL
Sbjct: 119 PDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ + 
Sbjct: 179 TASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEEVI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G+QT+VKVVKNK++ PFK  +FDIMYG GIS  GE+IDLGVK  IV+KSG+WFS+K  R+
Sbjct: 239 GSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYKNVRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
           GQGREN K +L+E+ +I+  IE ++R+ +  + +  L +    
Sbjct: 299 GQGRENVKQYLKEHPQISNEIEKIIREKSSKITNINLDQTGEE 341


>gi|3219848|sp|O32377|RECA_CHRVI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|2326398|emb|CAA04233.1| recA protein [Allochromatium vinosum]
          Length = 347

 Score =  365 bits (936), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 227/347 (65%), Positives = 286/347 (82%), Gaps = 3/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL AAL+QI++ +GKG++M++G  G++   IE +S+GSLGLD+ALGIGG PKGR++
Sbjct: 4   NRKKALAAALTQIEKQFGKGSVMRMGDVGAVRN-IEAISTGSLGLDLALGIGGVPKGRVI 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+SQK GGT AFVDAEHALD +YA KLGV++ +LL+SQPDTG
Sbjct: 63  EIYGPESSGKTTLTLHIIAESQKLGGTAAFVDAEHALDPVYAEKLGVNMTDLLVSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSGAVD++V+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDMLVRSGAVDVVVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK  D + GN+T
Sbjct: 183 KRSNCCVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAIKKGDEVIGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF+Q EFDI+YG+GIS  GE+IDLGV    +DKSGAW+S+ G R+GQG+
Sbjct: 243 KVKVVKNKVAPPFRQAEFDILYGQGISREGEIIDLGVAEGFIDKSGAWYSYDGNRIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           +N + FL EN  IA+ IE+ +R    L+    ++ PA     +  +D
Sbjct: 303 DNVRNFLCENPGIAQAIEARIRDK--LLPKGGVEAPAEADVPEPSED 347


>gi|302345309|ref|YP_003813662.1| protein RecA [Prevotella melaninogenica ATCC 25845]
 gi|302149606|gb|ADK95868.1| protein RecA [Prevotella melaninogenica ATCC 25845]
          Length = 341

 Score =  365 bits (936), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 205/323 (63%), Positives = 266/323 (82%), Gaps = 2/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+AA+S+I++ +GKG+IM++G +    E +EV+ +GS+ LD ALG+GG+P+GRI+E
Sbjct: 15  KLKALQAAMSKIEKDFGKGSIMRMGDEQ--IEQVEVIPTGSVALDTALGVGGYPRGRIIE 72

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL +SQPD GE
Sbjct: 73  IYGPESSGKTTLAIHAIAEAQKQGGIAAFIDAEHAFDRFYAEKLGVDVDNLWVSQPDNGE 132

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RS A+DI+V+DSVAALTP+ EIEGDMG+S  G+QARLMSQALRKLTS+I+
Sbjct: 133 QALEIADQLIRSSAIDILVVDSVAALTPKKEIEGDMGDSAVGLQARLMSQALRKLTSTIA 192

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGVMFG+PETTTGGNALKFYSSVRLDIRRV SIKD D + GNQ R
Sbjct: 193 KTNTCCIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRVTSIKDGDQVIGNQVR 252

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNK+A PF++ EF+I +GEGIS  GE++DLGV+  I+ KSG+WFS+ G +L QGR+
Sbjct: 253 VKIVKNKVAPPFRKAEFEITFGEGISKIGEIVDLGVQYGIIQKSGSWFSYNGTKLAQGRD 312

Query: 312 NSKIFLRENIEIAENIESLLRQN 334
            +K  +++N E+AE +E L++  
Sbjct: 313 ATKTMIKDNPELAEELEGLIKNA 335


>gi|170727678|ref|YP_001761704.1| recombinase A [Shewanella woodyi ATCC 51908]
 gi|238688716|sp|B1KPS6|RECA_SHEWM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|169813025|gb|ACA87609.1| recA protein [Shewanella woodyi ATCC 51908]
          Length = 353

 Score =  365 bits (936), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 217/354 (61%), Positives = 281/354 (79%), Gaps = 7/354 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL A L QI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P GRI
Sbjct: 5   ANKEKALNAVLGQIEKQFGKGSIMKLGENRSM--DVETISTGSLSLDVALGAGGLPMGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTL L  IA +Q+ G  CAF+DAEHALD IYA+KLGVD+ NLL SQPDT
Sbjct: 63  VEIYGPESSGKTTLTLELIAAAQREGKVCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  +
Sbjct: 123 GEQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           + ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK++D + GN+
Sbjct: 183 LKQTNTMLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKERDEVVGNE 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A+PFKQ EF I+YG+GI+  GEL+DLGV   +V+K+GAW+S+KG ++GQG
Sbjct: 243 TRVKVVKNKIAAPFKQAEFQILYGQGINRTGELVDLGVAHKLVEKAGAWYSYKGDKIGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           R N+  FL +N  IAE I++ LR   G++  S+  EPA+ ++   +  D +  E
Sbjct: 303 RANAGKFLLDNPAIAEEIDTALR---GMLLASV--EPAVESEVGDENVDLETGE 351


>gi|313668561|ref|YP_004048845.1| RecA protein [Neisseria lactamica ST-640]
 gi|313006023|emb|CBN87482.1| RecA protein [Neisseria lactamica 020-06]
          Length = 348

 Score =  365 bits (936), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 222/351 (63%), Positives = 282/351 (80%), Gaps = 6/351 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKSKAL AAL+QI++ +GKGAIM++       E +EV+S+GSLGLD+ALG+GG P+GRIV
Sbjct: 4   DKSKALAAALAQIEKSFGKGAIMKM-DGSQQEENLEVISTGSLGLDLALGVGGLPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  +AQ QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDTG
Sbjct: 63  EIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG +D++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  I
Sbjct: 123 EQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGHI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR GSIK  + + GN+T
Sbjct: 183 KKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV+KNK+A PF+QVEFDI+YGEGIS+ GELID+GVK  I++KSGAW+S+ G ++GQG+
Sbjct: 243 RVKVIKNKVAPPFRQVEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           +N +++L+EN E+A  I++ +R   G+            T+D+ D +  + 
Sbjct: 303 DNVRVWLKENPEVANEIDAKIRALNGV-----EMHITEGTQDETDGERPEE 348


>gi|297243442|ref|ZP_06927375.1| RecA/RadA DNA recombinase [Gardnerella vaginalis AMD]
 gi|296888689|gb|EFH27428.1| RecA/RadA DNA recombinase [Gardnerella vaginalis AMD]
          Length = 379

 Score =  365 bits (936), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 205/348 (58%), Positives = 274/348 (78%), Gaps = 4/348 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  ALE AL+ ++R YGKG+ M+LG +    + +EV+ +GSL LD ALGIGG P+GRIVE
Sbjct: 23  RQAALETALANVERQYGKGSAMRLGDRP--MQDVEVIPTGSLALDTALGIGGVPRGRIVE 80

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTLALH +A +QK GG  AF+DAEHALD +YARKLGVD   L++SQPD GE
Sbjct: 81  VYGPESSGKTTLALHIVANAQKNGGVAAFIDAEHALDPVYARKLGVDTDALIVSQPDNGE 140

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DML+RSGA+D+IV+DSVAAL P+AEI+GDMG+S  G+QARLMSQALRK+T ++S
Sbjct: 141 QALEIADMLIRSGALDVIVVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKMTGALS 200

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGV FG+PETTTGG ALKFY+SVR+DIRRV +IK+ +   GN+T+
Sbjct: 201 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRMDIRRVSTIKEGEEAVGNRTK 260

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNKMA PFK  EFD++YGEGIS  G +ID+G++A ++ KSG+WF+++G++LGQGRE
Sbjct: 261 VKIVKNKMAPPFKTAEFDVLYGEGISTEGSVIDMGLQAEVIKKSGSWFTYEGEQLGQGRE 320

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           N + FL++N  I E I   ++ + GL+      + A +++ D   DD+
Sbjct: 321 NVRKFLKDNPAITEEISEKVKASLGLM--HPEDQFAEDSELDQFADDS 366


>gi|308212786|gb|ADO21621.1| RecA [Burkholderia arboris]
 gi|308212788|gb|ADO21622.1| RecA [Burkholderia arboris]
          Length = 313

 Score =  365 bits (936), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 220/314 (70%), Positives = 273/314 (86%), Gaps = 1/314 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI
Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299

Query: 324 AENIESLLRQNAGL 337
           A  IE+ +R++ G+
Sbjct: 300 AREIENRIRESLGV 313


>gi|149924950|ref|ZP_01913278.1| recombinase A [Plesiocystis pacifica SIR-1]
 gi|149814175|gb|EDM73790.1| recombinase A [Plesiocystis pacifica SIR-1]
          Length = 378

 Score =  365 bits (936), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 221/341 (64%), Positives = 278/341 (81%), Gaps = 1/341 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIF-EGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +S A++ AL+ I++ +GKG+IM+L + G +  + + VV +G LGLDIALGIGG P+GRIV
Sbjct: 14  RSAAIDLALATIEKQFGKGSIMRLSADGKLPSQDVPVVPTGCLGLDIALGIGGLPRGRIV 73

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH +A++Q+ GG CAF+DAEHALD  YARK+GV  ++LLISQPD G
Sbjct: 74  EIYGPESSGKTTLTLHAVAEAQRQGGVCAFIDAEHALDVGYARKIGVKTEDLLISQPDYG 133

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IV+DSVAALTP+AE+EG+MG+S  G+QARLMSQALRKLT S+
Sbjct: 134 EQALEICDMLVRSGAIDVIVVDSVAALTPKAELEGEMGDSHVGLQARLMSQALRKLTGSV 193

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SR + +++FINQ+R KIGVMFGSPETTTGGNALKFYSSVRLDIRR+G IK  D +TGN+T
Sbjct: 194 SRGRTLVIFINQLRSKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGKIKQGDQVTGNRT 253

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PF++VEFDI +GEG+S  G LIDLGV+A ++DK+GAW S+KG R+GQGR
Sbjct: 254 RVKVVKNKMAPPFREVEFDINFGEGVSKEGMLIDLGVEAKVLDKAGAWLSYKGDRIGQGR 313

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           E +K FLREN +I   IE+ +    GL   +   E  ++  
Sbjct: 314 ERAKDFLRENKDIFGAIEAEVLSKHGLDRPAPEGERPLDAD 354


>gi|262279350|ref|ZP_06057135.1| DNA strand exchange and recombination protein RecA [Acinetobacter
           calcoaceticus RUH2202]
 gi|262259701|gb|EEY78434.1| DNA strand exchange and recombination protein RecA [Acinetobacter
           calcoaceticus RUH2202]
          Length = 348

 Score =  365 bits (936), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 217/342 (63%), Positives = 270/342 (78%), Gaps = 2/342 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL+AALSQI++ +GK  +M+LG      + +E VS+GSL LDIALGIGG PKGRIV
Sbjct: 4   NKSKALQAALSQIEKQFGKNTVMRLGDNT--VQAVEAVSTGSLTLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ L  IAQ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD G
Sbjct: 62  EIYGPESSGKTTMTLQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T + 
Sbjct: 122 EQALEIADMLVRSGAIDMIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNA 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G +K+ D I G++T
Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PF++  F I+YG+G +  GEL+DL V+  IV K+GAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKMAPPFREALFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
            N      EN ++A  IE  +R+      ++  Q       D
Sbjct: 302 NNVIRHFEENPQMAGEIERNIREQLLTTGNNTAQVEDEEEAD 343


>gi|251793617|ref|YP_003008347.1| recombinase A [Aggregatibacter aphrophilus NJ8700]
 gi|247535014|gb|ACS98260.1| protein RecA [Aggregatibacter aphrophilus NJ8700]
          Length = 353

 Score =  364 bits (935), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 226/353 (64%), Positives = 283/353 (80%), Gaps = 9/353 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALEAAL QI++ +GKGAIM+LG    +   IE +S+GS GLD+ALGIGG P GRIV
Sbjct: 6   EKQKALEAALGQIEKQFGKGAIMKLGDSQKL--DIEAISTGSFGLDLALGIGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA++QK G TCAF+DAEHALD IYA KLGVD+K LL+SQPD G
Sbjct: 64  EIFGPESSGKTTLTLSVIAEAQKNGKTCAFIDAEHALDPIYASKLGVDVKELLVSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVD++++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLTS I
Sbjct: 124 EQALEICDALVRSGAVDVVIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTSQI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+T
Sbjct: 184 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+QV+F I+YGEGIS   ELIDLGVK  ++ K+GAW++++ +++GQG+
Sbjct: 244 RVKVVKNKVAPPFRQVDFQILYGEGISKESELIDLGVKHKLISKAGAWYAYQNEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N+  +L++N E A+ IES LR       D LL  P      D+D +   N+E
Sbjct: 304 TNAMKWLKDNPEQAKIIESTLR-------DELLAHPESAITADSDNEAQGNIE 349


>gi|254786787|ref|YP_003074216.1| recombinase A [Teredinibacter turnerae T7901]
 gi|259563346|sp|C5BMR1|RECA_TERTT RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|237684795|gb|ACR12059.1| DNA recombinase RecA [Teredinibacter turnerae T7901]
          Length = 342

 Score =  364 bits (935), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 213/326 (65%), Positives = 271/326 (83%), Gaps = 2/326 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL+AAL QI R +GKG +M++G +    E I  VS+GSLGLD+ALGIGG PKGRI
Sbjct: 3   ANKEKALQAALQQIDRQFGKGTVMRMGDKE--LEAIPAVSTGSLGLDVALGIGGLPKGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTL L  IA++Q+ GGTCAFVDAEHALD IYA KLGV++ +L++SQPDT
Sbjct: 61  VEIYGPESSGKTTLTLQVIAEAQRKGGTCAFVDAEHALDPIYAAKLGVNVDDLIVSQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALE+ DMLVRSGA+D++V+DSVAALTP+AEIEG+MG+   G+QARLMSQALRK+T +
Sbjct: 121 GEQALEVADMLVRSGAIDVLVVDSVAALTPKAEIEGEMGDHHVGLQARLMSQALRKITGN 180

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I  + C+ +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GS+KD D + G++
Sbjct: 181 IKNANCLAIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSVKDGDEVIGSE 240

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQ EF I+YG GI+  GE+ID GVK  ++DK+GAW+S+ G ++GQG
Sbjct: 241 TRVKVVKNKVAPPFKQTEFQILYGTGINRLGEVIDYGVKLGLIDKAGAWYSYNGDKIGQG 300

Query: 310 RENSKIFLRENIEIAENIESLLRQNA 335
           + N+  +LRE+ ++A+ +E  L+   
Sbjct: 301 KNNAIQYLREHSDVAQTLEDRLKAEL 326


>gi|154503919|ref|ZP_02040979.1| hypothetical protein RUMGNA_01745 [Ruminococcus gnavus ATCC 29149]
 gi|153795518|gb|EDN77938.1| hypothetical protein RUMGNA_01745 [Ruminococcus gnavus ATCC 29149]
          Length = 358

 Score =  364 bits (935), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 194/357 (54%), Positives = 274/357 (76%), Gaps = 2/357 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K KAL+AA++++++ +GKG +M+LG    +   +E V +G L LD+ALG+GG PK
Sbjct: 1   MASDEKKKALDAAIAKLEKDFGKGTVMKLGEGSHV--AVETVPTGCLSLDLALGLGGVPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++E+YGPESSGKTT+ LH IA+ QK GG   F+DAEHALD +YA+K+GVD+  L ISQ
Sbjct: 59  GRVIEVYGPESSGKTTVTLHMIAEVQKRGGIAGFIDAEHALDPVYAKKIGVDIDELYISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+G+QALEI + +VRSGAVDIIVIDSVAAL P+ EIEGDMG+S  G+QARLMSQALRKL
Sbjct: 119 PDSGDQALEIAETMVRSGAVDIIVIDSVAALVPKQEIEGDMGDSHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T  IS+S C+++FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+D+RR+ ++K    + 
Sbjct: 179 TPVISKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASVRMDVRRIETLKQSGEMV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR+K+VKNK+A PFK+ EFDIM+G+GIS  G+++DL V   +V KSGAW++++G+++
Sbjct: 239 GNRTRIKIVKNKIAPPFKEAEFDIMFGKGISKEGDVLDLAVGIDLVKKSGAWYAYEGEKI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           GQGREN+K +L  + E+ E ++  +RQ+  L+      + +       ++    ++E
Sbjct: 299 GQGRENAKAYLTSHPEVMEELDRKVRQHYHLIEGEEEVKESDLKLTPKEEQMELSIE 355


>gi|257440233|ref|ZP_05615988.1| protein RecA [Faecalibacterium prausnitzii A2-165]
 gi|257197267|gb|EEU95551.1| protein RecA [Faecalibacterium prausnitzii A2-165]
          Length = 400

 Score =  364 bits (935), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 204/325 (62%), Positives = 262/325 (80%), Gaps = 3/325 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K  AL  AL+QI++ +GKGA+M+LG   ++   ++ +S+GS+GLD+ALG+GG P+GRI+E
Sbjct: 28  KKDALATALAQIEKQFGKGAVMKLGDNAAM--QVDAISTGSIGLDLALGVGGVPRGRIIE 85

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTLALH +A++QK GG  AF+D EHALD +YA  LGVD+ NLL+SQPDTGE
Sbjct: 86  VYGPESSGKTTLALHVLAEAQKKGGDVAFIDVEHALDPVYAEALGVDINNLLVSQPDTGE 145

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QA+EI + LVRSGA+D IV+DSVAA+ PRAEIEG+MG+S  G+QARLMSQA+RKLTS I 
Sbjct: 146 QAMEICEALVRSGAIDAIVVDSVAAMVPRAEIEGEMGDSHVGLQARLMSQAMRKLTSVIG 205

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQT 250
           ++  + +FINQ+R K+GV++G+PE TTGG ALK+YSSVR+DIRRV  +KD      GN T
Sbjct: 206 KTNTVCIFINQLREKVGVVYGNPEVTTGGRALKYYSSVRIDIRRVEGLKDSSGQFIGNHT 265

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R K+VKNK+A PF++ EFDIM+GEGIS   ELIDLGVK  IV KSGAWF++   RLGQGR
Sbjct: 266 RAKIVKNKVAPPFREAEFDIMFGEGISKMSELIDLGVKLGIVQKSGAWFNYGDIRLGQGR 325

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
           +N+K FLR+N EIA +IE  +R NA
Sbjct: 326 DNAKQFLRDNPEIANDIEGQVRANA 350


>gi|26988361|ref|NP_743786.1| recombinase A [Pseudomonas putida KT2440]
 gi|148549294|ref|YP_001269396.1| recombinase A [Pseudomonas putida F1]
 gi|37537942|sp|Q88ME4|RECA_PSEPK RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166220669|sp|A5W7V2|RECA_PSEP1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|24983113|gb|AAN67250.1|AE016352_3 recA protein [Pseudomonas putida KT2440]
 gi|148513352|gb|ABQ80212.1| RecA protein [Pseudomonas putida F1]
 gi|313500204|gb|ADR61570.1| RecA [Pseudomonas putida BIRD-1]
          Length = 355

 Score =  364 bits (935), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 210/325 (64%), Positives = 267/325 (82%), Gaps = 2/325 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI+R +GKGA+M++G      +GI  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKRALAAALGQIERQFGKGAVMRMGDHER--QGIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAEAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK++ PF+Q EF I+YG+GI   GE+IDLGV   +V+KSGAW++++G ++GQG+
Sbjct: 242 RVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYAYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
            N+  +L EN  I   IE  +R+  
Sbjct: 302 ANAAKYLAENPAIGAEIEKQIREKL 326


>gi|157326951|gb|ABV44588.1| RecA [Burkholderia cenocepacia]
          Length = 317

 Score =  364 bits (935), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 220/316 (69%), Positives = 275/316 (87%), Gaps = 1/316 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI
Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299

Query: 324 AENIESLLRQNAGLVA 339
           A  IE+ +R++ G+V+
Sbjct: 300 AREIENRIRESLGVVS 315


>gi|315635224|ref|ZP_07890501.1| recombination protein A [Aggregatibacter segnis ATCC 33393]
 gi|315475970|gb|EFU66725.1| recombination protein A [Aggregatibacter segnis ATCC 33393]
          Length = 350

 Score =  364 bits (935), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 223/347 (64%), Positives = 279/347 (80%), Gaps = 2/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALEAAL QI++ +GKGAIM+LG    +   IE +S+GS GLD+ALGIGG P GRIV
Sbjct: 6   EKQKALEAALGQIEKQFGKGAIMKLGDSQKL--DIEAISTGSFGLDLALGIGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA++QK G TCAF+DAEHALD IYA KLGVD+K LL+SQPD G
Sbjct: 64  EIFGPESSGKTTLTLSVIAEAQKAGKTCAFIDAEHALDPIYASKLGVDVKELLVSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT  I
Sbjct: 124 EQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTGQI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRRVGSIK+ D + GN+T
Sbjct: 184 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRVGSIKEGDEVIGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+QV+F I+YGEGIS   ELIDLGVK  ++ K+GAW++++ +++GQG+
Sbjct: 244 RVKVVKNKVAPPFRQVDFQILYGEGISKESELIDLGVKHKLISKAGAWYAYENEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
            N+  +L+EN E A+ IES LR       ++ +     +   +AD +
Sbjct: 304 TNAMKWLKENPEQAKLIESTLRDELLAHPETAITADVEDEAGEADFE 350


>gi|295103957|emb|CBL01501.1| RecA protein [Faecalibacterium prausnitzii SL3/3]
          Length = 391

 Score =  364 bits (935), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 205/325 (63%), Positives = 261/325 (80%), Gaps = 3/325 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K  AL  AL+QI++ +GKGA+M+LG   S+   ++ +S+GSLGLD+ALG+GG P+GRI+E
Sbjct: 21  KKDALATALAQIEKQFGKGAVMKLGDNASM--QVDAISTGSLGLDLALGVGGVPRGRIIE 78

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTLALH +A++QK GG  AF+D EHALD  YA  LGVD+ NLL+SQPDTGE
Sbjct: 79  VYGPESSGKTTLALHILAEAQKKGGEVAFIDVEHALDPTYAEALGVDINNLLVSQPDTGE 138

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QA+EI + LVRSGA+D IV+DSVAA+ PRAEIEG+MG+S  G+QARLMSQA+RKLTS I 
Sbjct: 139 QAMEICEALVRSGAIDAIVVDSVAAMVPRAEIEGEMGDSHVGLQARLMSQAMRKLTSVIG 198

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQT 250
           ++  + VFINQ+R K+GVM+G+PE TTGG ALK+Y+SVR+DIRRV  +KD      GN T
Sbjct: 199 KTNTVCVFINQLREKVGVMYGNPEVTTGGRALKYYASVRIDIRRVEGLKDSSGQFIGNHT 258

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R K+VKNK+A PF++ EFDIM+GEGIS   ELID+GVK  IV KSGAWF++   RLGQGR
Sbjct: 259 RAKIVKNKVAPPFREAEFDIMFGEGISKMSELIDVGVKLGIVQKSGAWFNYGDIRLGQGR 318

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
           +N+K FL++N EIA +IE  +R NA
Sbjct: 319 DNAKQFLKDNPEIANDIEGQIRANA 343


>gi|70904855|gb|AAZ14007.1| RecA [Burkholderia cenocepacia]
          Length = 316

 Score =  364 bits (935), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 221/317 (69%), Positives = 275/317 (86%), Gaps = 1/317 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGE IS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGERISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESLLRQNAGLVA 339
           IA  IE+ +R++ G+VA
Sbjct: 300 IAREIENRIRESLGVVA 316


>gi|315607474|ref|ZP_07882469.1| recombination protein A [Prevotella buccae ATCC 33574]
 gi|315250657|gb|EFU30651.1| recombination protein A [Prevotella buccae ATCC 33574]
          Length = 341

 Score =  364 bits (935), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 206/323 (63%), Positives = 267/323 (82%), Gaps = 2/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+AA+++I++ +GKG+IM++G +    E +EV+ +GS+ LD+ALG+GG+P+GRI+E
Sbjct: 15  KLKALQAAMAKIEKDFGKGSIMRMGDEQ--IENVEVIHTGSIALDVALGVGGYPRGRIIE 72

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD GE
Sbjct: 73  IYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDNGE 132

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RS A+DI+VIDSVAALTP+ EIEGDMG+S  G+QARLMSQALRKLTS+IS
Sbjct: 133 QALEIADQLIRSSAIDILVIDSVAALTPKKEIEGDMGDSAVGLQARLMSQALRKLTSTIS 192

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR+  SIKD D I GNQ R
Sbjct: 193 KTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRKTTSIKDGDQIIGNQVR 252

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV+KNK+A PF++ EF+I +GEGIS  GE++DLGV+  IV KSG+WFS+ G +LGQGR+
Sbjct: 253 VKVIKNKVAPPFRKAEFEITFGEGISKVGEILDLGVEYDIVKKSGSWFSYNGSKLGQGRD 312

Query: 312 NSKIFLRENIEIAENIESLLRQN 334
            +K  L++N E+ E +E+ +++ 
Sbjct: 313 ATKNLLKDNPELCEELEAKIKEA 335


>gi|313112840|ref|ZP_07798487.1| protein RecA [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624910|gb|EFQ08218.1| protein RecA [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 393

 Score =  364 bits (935), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 206/332 (62%), Positives = 263/332 (79%), Gaps = 3/332 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K+     K  AL  AL+QI++ +GKGA+M+LG   S+   ++ +S+GSLGLD+ALG+GG 
Sbjct: 15  KKTEPEAKKDALATALAQIEKQFGKGAVMKLGDNASM--QVDAISTGSLGLDLALGVGGV 72

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GRI+E+YGPESSGKTTLALH +A++QK GG  AF+D EHALD  YA  LGVD+ NLL+
Sbjct: 73  PRGRIIEVYGPESSGKTTLALHILAEAQKQGGEVAFIDVEHALDPTYAEALGVDINNLLV 132

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQA+EI + LVRSGA+D IV+DSVAA+ PRAEIEG+MG+S  G+QARLMSQA+R
Sbjct: 133 SQPDTGEQAMEICEALVRSGAIDAIVVDSVAAMVPRAEIEGEMGDSHVGLQARLMSQAMR 192

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD- 243
           KLTS I ++  + VFINQ+R K+GVM+G+PE TTGG ALK+Y+SVR+DIRRV  +KD   
Sbjct: 193 KLTSVIGKTNTVCVFINQLREKVGVMYGNPEVTTGGRALKYYASVRIDIRRVEGLKDSSG 252

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
              GN TR K+VKNK+A PF++ EFDIM+GEGIS   ELID+GVK  IV KSGAWF++  
Sbjct: 253 QFIGNHTRAKIVKNKVAPPFREAEFDIMFGEGISKMSELIDVGVKLGIVQKSGAWFNYGD 312

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
            RLGQGR+N+K FL++N EIA +IE  +R NA
Sbjct: 313 IRLGQGRDNAKQFLKDNPEIANDIEGQIRANA 344


>gi|157326905|gb|ABV44565.1| RecA [Burkholderia cenocepacia]
          Length = 320

 Score =  364 bits (935), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 220/316 (69%), Positives = 275/316 (87%), Gaps = 1/316 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI
Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299

Query: 324 AENIESLLRQNAGLVA 339
           A  IE+ +R++ G+V+
Sbjct: 300 AREIENRIRESLGVVS 315


>gi|157326901|gb|ABV44563.1| RecA [Burkholderia cenocepacia]
          Length = 322

 Score =  364 bits (935), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 220/316 (69%), Positives = 275/316 (87%), Gaps = 1/316 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI
Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299

Query: 324 AENIESLLRQNAGLVA 339
           A  IE+ +R++ G+V+
Sbjct: 300 AREIENRIRESLGVVS 315


>gi|157326889|gb|ABV44557.1| RecA [Burkholderia cenocepacia]
 gi|157326891|gb|ABV44558.1| RecA [Burkholderia cenocepacia]
 gi|157326895|gb|ABV44560.1| RecA [Burkholderia cenocepacia]
 gi|157326911|gb|ABV44568.1| RecA [Burkholderia cenocepacia]
 gi|157326915|gb|ABV44570.1| RecA [Burkholderia cenocepacia]
          Length = 321

 Score =  364 bits (935), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 220/316 (69%), Positives = 275/316 (87%), Gaps = 1/316 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI
Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299

Query: 324 AENIESLLRQNAGLVA 339
           A  IE+ +R++ G+V+
Sbjct: 300 AREIENRIRESLGVVS 315


>gi|150171062|emb|CAO01514.1| DNA recombination protein [Burkholderia seminalis]
          Length = 330

 Score =  364 bits (935), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 218/316 (68%), Positives = 274/316 (86%), Gaps = 1/316 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 6   EKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 64

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 65  TLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 124

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 125 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 184

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 185 RMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 244

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI
Sbjct: 245 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 304

Query: 324 AENIESLLRQNAGLVA 339
           A  IE+ +R++ G+ +
Sbjct: 305 AREIENRIRESLGVAS 320


>gi|15604595|ref|NP_221113.1| recombinase A [Rickettsia prowazekii str. Madrid E]
 gi|730486|sp|P41079|RECA_RICPR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|402679|gb|AAA17883.1| Rec A Protein [Rickettsia prowazekii]
 gi|3861290|emb|CAA15189.1| RECA PROTEIN (recA) [Rickettsia prowazekii]
 gi|292572409|gb|ADE30324.1| RecA [Rickettsia prowazekii Rp22]
          Length = 340

 Score =  364 bits (935), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 221/342 (64%), Positives = 285/342 (83%), Gaps = 2/342 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+ +DK +A+ AAL+QI++ YGKG++M+LG + ++   IE +S+GSLGLDIALGIGG PK
Sbjct: 1   MSNIDKERAIAAALAQIEKSYGKGSVMKLGQRPNV--DIEAISTGSLGLDIALGIGGVPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL LH IA+SQK GGTCAF+DAEHALD  YA+KLGV++  L+ISQ
Sbjct: 59  GRIIEIFGPESSGKTTLTLHLIAESQKKGGTCAFIDAEHALDPAYAKKLGVNIDELIISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++    QARLMSQALRKL
Sbjct: 119 PDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ + 
Sbjct: 179 TASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEEVI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G+QT+VKVVKNK++ PFK  +FDIMYG GIS  GE+IDLGVK  I++KSG+WFS+   R+
Sbjct: 239 GSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLEIIEKSGSWFSYNKIRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348
           GQGREN K +L+E+ +I+  IE ++R+ +  + +  L +   
Sbjct: 299 GQGRENVKQYLKEHPQISNEIEKIIREKSSAITNINLDQTEE 340


>gi|51473929|ref|YP_067686.1| recombinase A [Rickettsia typhi str. Wilmington]
 gi|59798216|sp|Q68VY8|RECA_RICTY RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|51460241|gb|AAU04204.1| recombinase A [Rickettsia typhi str. Wilmington]
          Length = 340

 Score =  364 bits (935), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 222/342 (64%), Positives = 284/342 (83%), Gaps = 2/342 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+  DK +A+ AAL+QI++ YGKG++M+LG + +I   IE +S+GSLGLDIALGIGG PK
Sbjct: 1   MSNTDKERAIAAALAQIEKSYGKGSVMKLGQRPNI--DIEAISTGSLGLDIALGIGGVPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL LH IA+SQK GGTCAF+DAEHALD  YA+KLGV++  L+ISQ
Sbjct: 59  GRIIEIFGPESSGKTTLTLHLIAESQKNGGTCAFIDAEHALDPAYAKKLGVNIDELIISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++    QARLMSQALRKL
Sbjct: 119 PDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ + 
Sbjct: 179 TASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEEVI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G+QT+VKVVKNK++ PFK  +FDIMYG GIS  GE+IDLGVK  I++KSG+WF++   R+
Sbjct: 239 GSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLEIIEKSGSWFAYNKVRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348
           GQGREN K +L+E+ +IA  IE ++R+ +  + +  L +   
Sbjct: 299 GQGRENVKQYLKEHPQIANEIEKIIREKSSAITNINLDQTEE 340


>gi|296802982|gb|ADH51567.1| DNA recombinase [Burkholderia contaminans]
          Length = 316

 Score =  364 bits (935), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 220/315 (69%), Positives = 273/315 (86%), Gaps = 1/315 (0%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           + +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL 
Sbjct: 3   KQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLT 61

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG
Sbjct: 62  LQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSG 121

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           ++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+R
Sbjct: 122 SIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIR 181

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF+
Sbjct: 182 MKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFR 241

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           +  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA
Sbjct: 242 EAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIA 301

Query: 325 ENIESLLRQNAGLVA 339
             IE+ +R++ G+V 
Sbjct: 302 REIENRIRESLGVVT 316


>gi|149911455|ref|ZP_01900072.1| putative RecA protein [Moritella sp. PE36]
 gi|149805486|gb|EDM65493.1| putative RecA protein [Moritella sp. PE36]
          Length = 346

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 220/345 (63%), Positives = 278/345 (80%), Gaps = 5/345 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL AAL QI++ +GKG+IM+LG   ++   +E VS+GSL LDIALG GG P GRI
Sbjct: 3   ANKEKALAAALGQIEKQFGKGSIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTL L  IA +Q+ G  CAF+DAEHALD IYA KLGVD+  LLISQPDT
Sbjct: 61  VEIYGPESSGKTTLTLEVIASAQREGKVCAFIDAEHALDPIYAGKLGVDVNELLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITDML RSGAVDIIVIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT +
Sbjct: 121 GEQALEITDMLARSGAVDIIVIDSVAALTPKAEIEGNMGDSHMGLQARMLSQAMRKLTGN 180

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +  S  + +FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+KD D ITGN+
Sbjct: 181 LKTSNTMCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDGDEITGNE 240

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A+PF+Q EF I+YG+G +  GEL+DLGVK  +++K+GAW+S+KG ++GQG
Sbjct: 241 TRVKVVKNKIAAPFRQAEFQILYGKGFNRNGELVDLGVKEKLIEKAGAWYSYKGDKIGQG 300

Query: 310 RENSKIFLRENIEIAENIESLLRQN-AGLVADSL--LQEPAINTK 351
           +  +  +L +N +IA  I+ ++R N  G   D +  ++ P + T+
Sbjct: 301 KAKASQYLADNPKIAAEIDGMIRANLLGNKGDEVADVKTPEVETE 345


>gi|91790514|ref|YP_551466.1| recombination protein RecA [Polaromonas sp. JS666]
 gi|91699739|gb|ABE46568.1| RecA protein [Polaromonas sp. JS666]
          Length = 377

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 223/338 (65%), Positives = 285/338 (84%), Gaps = 1/338 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG IM+LG  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 34  IEKQFGKGTIMKLG-AGEVIEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 92

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGTCAFVDAEHALD  YA+KLGV+L++LLISQPDTGEQALEI D L R
Sbjct: 93  LTLQVIAEMQKLGGTCAFVDAEHALDIQYAQKLGVNLQDLLISQPDTGEQALEIVDSLTR 152

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AE+EG+MG+SLPG+QARLMSQALRKLT++I ++ C+++FINQ
Sbjct: 153 SGAVDLIVVDSVAALTPKAELEGEMGDSLPGLQARLMSQALRKLTATIKKANCMVIFINQ 212

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  + + GN+TRVKVVKNK+ASP
Sbjct: 213 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGEEVIGNETRVKVVKNKVASP 272

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FK  EFDI+YGEGIS  GE++DLGV   IV+K+GAW++F G+++GQGR+NS+ FL+EN +
Sbjct: 273 FKTAEFDILYGEGISRLGEVLDLGVAGHIVEKAGAWYAFNGEKIGQGRDNSREFLKENPD 332

Query: 323 IAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           +A  IE+ +R++ G+   ++  E    +   A  + ++
Sbjct: 333 LAIEIENKVRESLGVPLIAVAAETGEKSDKAAKVEKSE 370


>gi|160942862|ref|ZP_02090101.1| hypothetical protein FAEPRAM212_00338 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445763|gb|EDP22766.1| hypothetical protein FAEPRAM212_00338 [Faecalibacterium prausnitzii
           M21/2]
          Length = 391

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 205/325 (63%), Positives = 261/325 (80%), Gaps = 3/325 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K  AL  AL+QI++ +GKGA+M+LG   S+   ++ +S+GSLGLD+ALG+GG P+GRI+E
Sbjct: 21  KKDALATALAQIEKQFGKGAVMKLGDNASM--QVDAISTGSLGLDLALGVGGVPRGRIIE 78

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTLALH +A++QK GG  AF+D EHALD  YA  LGVD+ NLL+SQPDTGE
Sbjct: 79  VYGPESSGKTTLALHILAEAQKKGGEVAFIDVEHALDPTYAEALGVDINNLLVSQPDTGE 138

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QA+EI + LVRSGA+D IV+DSVAA+ PRAEIEG+MG+S  G+QARLMSQA+RKLTS I 
Sbjct: 139 QAMEICEALVRSGAIDAIVVDSVAAMVPRAEIEGEMGDSHVGLQARLMSQAMRKLTSVIG 198

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQT 250
           ++  + VFINQ+R K+GVM+G+PE TTGG ALK+Y+SVR+DIRRV  +KD      GN T
Sbjct: 199 KTNTVCVFINQLREKVGVMYGNPEVTTGGRALKYYASVRIDIRRVEGLKDSSGQFIGNHT 258

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R K+VKNK+A PF++ EFDIM+GEGIS   ELID+GVK  IV KSGAWF++   RLGQGR
Sbjct: 259 RAKIVKNKVAPPFREAEFDIMFGEGISKMSELIDVGVKLGIVQKSGAWFNYGDIRLGQGR 318

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
           +N+K FL++N EIA +IE  +R NA
Sbjct: 319 DNAKQFLKDNPEIANDIEGQIRANA 343


>gi|260888185|ref|ZP_05899448.1| protein RecA [Selenomonas sputigena ATCC 35185]
 gi|330838472|ref|YP_004413052.1| recA protein [Selenomonas sputigena ATCC 35185]
 gi|260862019|gb|EEX76519.1| protein RecA [Selenomonas sputigena ATCC 35185]
 gi|329746236|gb|AEB99592.1| recA protein [Selenomonas sputigena ATCC 35185]
          Length = 361

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 198/350 (56%), Positives = 262/350 (74%), Gaps = 1/350 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +D+ +AL+ AL  I++ +GKG+IM+LG   +    +E + +G L LD+ALG+GG P+GRI
Sbjct: 1   MDREEALKNALKHIEKEFGKGSIMRLGEASANMN-VETIPTGILPLDVALGVGGLPRGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VE+YGPESSGKTT+ LH IA+ QK GG  AF+DAEHALD +YA+KLGV++  LLISQPDT
Sbjct: 60  VEVYGPESSGKTTVTLHMIAEVQKNGGIAAFIDAEHALDPVYAKKLGVNIDELLISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQAL+I D LVRSGA+DIIV+DSVAAL P+AEI+GDMG+ + GM ARLMS+A+RKLT  
Sbjct: 120 GEQALDIVDALVRSGAIDIIVVDSVAALVPKAEIDGDMGDQVVGMHARLMSRAMRKLTGF 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S+ + VFINQ+R K+GVMFGSPETTTGG ALKFYS+VRLD+R+   I     + GN+
Sbjct: 180 ISKSRTVAVFINQIREKVGVMFGSPETTTGGRALKFYSTVRLDVRKTDKIMQGQEMIGNR 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           T+V+VVKNK+A PFK  EFDIMYGEG+S  G ++D+     I++KSG+W+S+ G RLGQG
Sbjct: 240 TKVRVVKNKVAPPFKTAEFDIMYGEGVSRVGTVLDIATDFDIIEKSGSWYSYNGSRLGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           +EN+K  L+E  E+A  IE  +R      A +          DD ++ + 
Sbjct: 300 KENAKKALKEKPELAAEIEEKVRAKLMEQATAAKDGEVERVPDDENEREA 349


>gi|70904851|gb|AAZ14005.1| RecA [Burkholderia cepacia]
 gi|296837399|gb|ADH59558.1| DNA recombinase [Burkholderia contaminans]
          Length = 316

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 220/315 (69%), Positives = 273/315 (86%), Gaps = 1/315 (0%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           + +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL 
Sbjct: 1   KQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLT 59

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG
Sbjct: 60  LQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSG 119

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           ++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+R
Sbjct: 120 SIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIR 179

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF+
Sbjct: 180 MKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFR 239

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           +  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA
Sbjct: 240 EAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIA 299

Query: 325 ENIESLLRQNAGLVA 339
             IE+ +R++ G+V 
Sbjct: 300 REIENRIRESLGVVT 314


>gi|255655339|ref|ZP_05400748.1| RecA protein (recombinase A) [Clostridium difficile QCD-23m63]
 gi|296451325|ref|ZP_06893065.1| recombination protein A [Clostridium difficile NAP08]
 gi|296880323|ref|ZP_06904286.1| recombination protein A [Clostridium difficile NAP07]
 gi|296259931|gb|EFH06786.1| recombination protein A [Clostridium difficile NAP08]
 gi|296428564|gb|EFH14448.1| recombination protein A [Clostridium difficile NAP07]
          Length = 348

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 205/341 (60%), Positives = 270/341 (79%), Gaps = 2/341 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL  AL +I++ +GKG++M+LG   S+   I+V+S+G++GLDIA+GIGG P+GRIV
Sbjct: 6   EKLKALNEALGKIEKDFGKGSVMKLGEATSM--SIDVISTGAIGLDIAIGIGGLPRGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+AL  +A +QK GG  AF+DAEHALD +YA+ LGVD+ NL+ISQPDTG
Sbjct: 64  EVYGPESSGKTTVALSCVASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L+RSGA+DIIVIDSVAAL P+AEI+GDMG+S  G+QARLMSQALRKLT SI
Sbjct: 124 EQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKLTGSI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+R K+G+MFG+PETTTGG ALKFYSSVRLD+R++ +IK  D + G++T
Sbjct: 184 KKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIGSRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDIMYGEGIS  G+L+D+     IV KSG+W+S+   +LGQGR
Sbjct: 244 RVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           EN K FL +N+++   I+  +R    L  +      +++ +
Sbjct: 304 ENVKKFLEDNLDLTNEIDEKVRAFYNLNEEHEEAGNSVSKE 344


>gi|220932026|ref|YP_002508934.1| recA protein [Halothermothrix orenii H 168]
 gi|219993336|gb|ACL69939.1| recA protein [Halothermothrix orenii H 168]
          Length = 357

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 194/339 (57%), Positives = 268/339 (79%), Gaps = 2/339 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALE A+ +I++ +G+G+IM+LG   ++   +EV+ +G+L LD+ALG+GG P+GRI+
Sbjct: 8   EKEKALEMAVKRIEKQFGQGSIMKLGEATAL--NVEVIPTGALPLDLALGVGGVPRGRII 65

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH IA++QK  G  AF+DAEHALD  Y+  LGV++ NLLISQP+ G
Sbjct: 66  EIYGPESSGKTTLALHIIAEAQKRNGVAAFIDAEHALDPKYSENLGVNIDNLLISQPNNG 125

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ALEI + LVRS A+D+IVIDSVAAL P+AE++G+MG+S  G+QARLMSQA+RKL+ +I
Sbjct: 126 EEALEIAEALVRSNAIDVIVIDSVAALVPKAELDGEMGDSHVGLQARLMSQAMRKLSGAI 185

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+SK + +FINQ+R K+GVMFG+PETT GG ALKFYSSVR++IR+  ++K+ D I G+QT
Sbjct: 186 SKSKTVCIFINQIREKVGVMFGNPETTPGGRALKFYSSVRMEIRKTQTLKNGDEIVGSQT 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++  FDIMYG GIS  G ++D+GV   I+D++G+W+S+  +RLGQGR
Sbjct: 246 RVKVVKNKVAPPFRRAIFDIMYGTGISTSGCILDMGVDTGIIDRAGSWYSYGDERLGQGR 305

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
           EN+K FL +N +I + IE  +++  GL  +  +     N
Sbjct: 306 ENAKNFLEDNPDIMKEIEMKIKERVGLEVEDEVASTKEN 344


>gi|319940910|ref|ZP_08015248.1| recA [Sutterella wadsworthensis 3_1_45B]
 gi|319805626|gb|EFW02414.1| recA [Sutterella wadsworthensis 3_1_45B]
          Length = 381

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 224/358 (62%), Positives = 291/358 (81%), Gaps = 6/358 (1%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           D  +     ++ KAL AAL+ I++ +GKGAIM++   G   + IEVVS+GSLGLD+ALG+
Sbjct: 9   DPVERKEGDERKKALNAALASIEKQFGKGAIMRMAD-GVEQQNIEVVSTGSLGLDLALGV 67

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GRIVEIYGPESSGKTTL+L  IA+ QK GGTCAFVDAEHALD  YA++LGV++  
Sbjct: 68  GGLPRGRIVEIYGPESSGKTTLSLQVIAEMQKIGGTCAFVDAEHALDIQYAQRLGVNVPE 127

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPD GEQALEI D LVRSG++D+IV+DSVAALTPR+EIEGDMG++LPG+QARLMSQ
Sbjct: 128 LLLSQPDAGEQALEIVDALVRSGSIDLIVVDSVAALTPRSEIEGDMGDALPGLQARLMSQ 187

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT+S+SR+KC+++FINQ+RMKIG  +G+PETTTGGNALKFYSSVRLDIRRVG+IK 
Sbjct: 188 ALRKLTTSVSRTKCLVIFINQIRMKIG-GYGNPETTTGGNALKFYSSVRLDIRRVGAIKR 246

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            D + GN+TRVKVVKNK+A PFKQV+FDI+YGEGIS  GE+ID+G    +++KSGAW+S+
Sbjct: 247 ADEVIGNETRVKVVKNKVAPPFKQVQFDILYGEGISRLGEIIDIGTDLKVLEKSGAWYSY 306

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL----VADSLLQEPAINTKDDAD 355
            G+RLGQG+E  +  L EN ++A+ IE  +R+  G+    ++    + P ++  +D+D
Sbjct: 307 DGRRLGQGKEKVRDLLAENPDLAKEIEGKIRELKGVHISSISAVDDEMPDMDQAEDSD 364


>gi|28198030|ref|NP_778344.1| recombinase A [Xylella fastidiosa Temecula1]
 gi|182680657|ref|YP_001828817.1| recombinase A [Xylella fastidiosa M23]
 gi|32129953|sp|Q87F44|RECA_XYLFT RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238691049|sp|B2I680|RECA_XYLF2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|28056090|gb|AAO27993.1| recombination protein RecA [Xylella fastidiosa Temecula1]
 gi|182630767|gb|ACB91543.1| recA protein [Xylella fastidiosa M23]
 gi|307579118|gb|ADN63087.1| recombinase A [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 347

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 220/353 (62%), Positives = 285/353 (80%), Gaps = 13/353 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL  ALSQI++ +GKG++M++G    + E +E + +GSL LD+ALGIGG PKGR+V
Sbjct: 4   NKKRALSVALSQIEKQFGKGSVMRMGD--RVIEAVEAIPTGSLMLDLALGIGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAQCQKRGGTAAFIDAEHALDPIYAGKLGVNVDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG++DI+VIDSVAALTPRAEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSGSIDIMVIDSVAALTPRAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  +++FINQ+RMKIG+M    SPETTTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 182 KRSNTLVIFINQLRMKIGIMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELI++GV+A +V+K+GAW+S+ G+R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIEMGVEAKLVEKAGAWYSYGGERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           G++N++ +LREN   A  +E+ LR+           EP   ++++ D+D  ++
Sbjct: 302 GKDNARGYLRENPHFAAKLEADLREKF---------EPTELSREEGDEDTLED 345


>gi|157326913|gb|ABV44569.1| RecA [Burkholderia cenocepacia]
          Length = 314

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 220/315 (69%), Positives = 274/315 (86%), Gaps = 1/315 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI
Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299

Query: 324 AENIESLLRQNAGLV 338
           A  IE+ +R++ G+V
Sbjct: 300 AREIENRIRESLGVV 314


>gi|302342574|ref|YP_003807103.1| recA protein [Desulfarculus baarsii DSM 2075]
 gi|301639187|gb|ADK84509.1| recA protein [Desulfarculus baarsii DSM 2075]
          Length = 362

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 212/352 (60%), Positives = 276/352 (78%), Gaps = 3/352 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           KE  +  + KA++AAL QI+R +G+GAIM+LGS G     ++ +S+GSLGLD+A G+GG 
Sbjct: 4   KETEVQTREKAMDAALKQIERSFGRGAIMRLGS-GEALRDVQAISTGSLGLDLATGVGGV 62

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GR+ EIYGPESSGKTTLALH IA++QK GG  AF+DAEHALD  YAR+LGV++ +LL+
Sbjct: 63  PRGRVTEIYGPESSGKTTLALHVIAEAQKLGGVAAFIDAEHALDISYARRLGVNVDDLLV 122

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQAL+I ++LVRSGAVD++VIDSVAAL PRAE+EG+MG+S  G+QARLMSQA+R
Sbjct: 123 SQPDTGEQALDIAEILVRSGAVDVLVIDSVAALVPRAELEGEMGDSHVGLQARLMSQAMR 182

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLTS IS+S   ++FINQ+RMKIGVMFG+PETTTGGNALKFY+S+RLDIR    IKD + 
Sbjct: 183 KLTSVISKSNTAVIFINQIRMKIGVMFGNPETTTGGNALKFYASLRLDIRSNSKIKDGEE 242

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
             G + +VKVVKNK+A PF+  EFD+++G GI+  GELID+GV   +V KSGAW+S+  +
Sbjct: 243 EIGRRVKVKVVKNKVAPPFRLAEFDVIFGMGINRLGELIDIGVNHDVVTKSGAWYSYGDE 302

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNA--GLVADSLLQEPAINTKDDA 354
           RLGQGREN+   LREN ++A +I+  LR     G+VA++        T  +A
Sbjct: 303 RLGQGRENACNHLRENPDLAADIDKRLRAKLGVGMVAETAQAGETKTTAPNA 354


>gi|15598813|ref|NP_252307.1| recombinase A [Pseudomonas aeruginosa PAO1]
 gi|107103131|ref|ZP_01367049.1| hypothetical protein PaerPA_01004200 [Pseudomonas aeruginosa PACS2]
 gi|116051614|ref|YP_789547.1| recombinase A [Pseudomonas aeruginosa UCBPP-PA14]
 gi|152984834|ref|YP_001346907.1| recombinase A [Pseudomonas aeruginosa PA7]
 gi|218890158|ref|YP_002439022.1| recombinase A [Pseudomonas aeruginosa LESB58]
 gi|313108975|ref|ZP_07794950.1| RecA protein [Pseudomonas aeruginosa 39016]
 gi|132233|sp|P08280|RECA_PSEAE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|122260757|sp|Q02R89|RECA_PSEAB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166220668|sp|A6V1H2|RECA_PSEA7 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226737762|sp|B7V8D1|RECA_PSEA8 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|9949775|gb|AAG07005.1|AE004782_3 RecA protein [Pseudomonas aeruginosa PAO1]
 gi|45384|emb|CAA36504.1| unnamed protein product [Pseudomonas aeruginosa]
 gi|45414|emb|CAA29173.1| unnamed protein product [Pseudomonas aeruginosa]
 gi|115586835|gb|ABJ12850.1| RecA protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|150959992|gb|ABR82017.1| protein RecA [Pseudomonas aeruginosa PA7]
 gi|218770381|emb|CAW26146.1| RecA protein [Pseudomonas aeruginosa LESB58]
 gi|310881452|gb|EFQ40046.1| RecA protein [Pseudomonas aeruginosa 39016]
          Length = 346

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 215/347 (61%), Positives = 277/347 (79%), Gaps = 4/347 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKRALAAALGQIERQFGKGAVMRMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAEAQKQGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF+Q EF I+YG+GI   GE+IDLGV+  +V+KSGAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKVSPPFRQAEFQILYGKGIYRTGEIIDLGVQLGLVEKSGAWYSYQGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
            N+  +L +N EI   +E  +R    L+A S   +       DA+ D
Sbjct: 302 ANAAKYLEDNPEIGSVLEKTIRDQ--LLAKSGPVKADAEEVADAEAD 346


>gi|296837373|gb|ADH59545.1| DNA recombinase [Burkholderia contaminans]
 gi|296837385|gb|ADH59551.1| DNA recombinase [Burkholderia contaminans]
          Length = 316

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 220/315 (69%), Positives = 273/315 (86%), Gaps = 1/315 (0%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           + +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL 
Sbjct: 1   KQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLT 59

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG
Sbjct: 60  LQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSG 119

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           ++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+R
Sbjct: 120 SIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIR 179

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF+
Sbjct: 180 MKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFR 239

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           +  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA
Sbjct: 240 EAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIA 299

Query: 325 ENIESLLRQNAGLVA 339
             IE+ +R++ G+V 
Sbjct: 300 REIENRIRESLGVVT 314


>gi|238650602|ref|YP_002916454.1| recombinase A [Rickettsia peacockii str. Rustic]
 gi|259563344|sp|C4K1F5|RECA_RICPU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238624700|gb|ACR47406.1| recombinase A [Rickettsia peacockii str. Rustic]
          Length = 343

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 222/343 (64%), Positives = 283/343 (82%), Gaps = 2/343 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+  DK +A+ AAL+QI++ YGKG++M+LG +  +   IE VS+GSLGLDIALGIGG PK
Sbjct: 1   MSNTDKERAIAAALAQIEKSYGKGSVMKLGQRPHV--DIEAVSTGSLGLDIALGIGGVPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA+KLGV++  L+ISQ
Sbjct: 59  GRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIAELIISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D L+RS  +D+I+IDSVAAL P++EIEG+MG++    QARLMSQALRKL
Sbjct: 119 PDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ + 
Sbjct: 179 TASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEEVI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G+QT+VKVVKNK++ PFK  +FDIMYG GIS  GE+IDLGVK  IV+KSG+WFS+K  R+
Sbjct: 239 GSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYKNVRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
           GQGREN K +L+E+ +I+  IE ++R+ +  + +  L +    
Sbjct: 299 GQGRENVKQYLKEHPQISNEIEKIIREKSSKITNINLDQTEEE 341


>gi|293609243|ref|ZP_06691545.1| recA protein [Acinetobacter sp. SH024]
 gi|292827695|gb|EFF86058.1| recA protein [Acinetobacter sp. SH024]
 gi|325122507|gb|ADY82030.1| recombinase A [Acinetobacter calcoaceticus PHEA-2]
          Length = 348

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 216/325 (66%), Positives = 267/325 (82%), Gaps = 2/325 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +KSKAL+AALSQI++ +GK  +M+LG      + +E VS+GSL LDIALGIGG PKGRIV
Sbjct: 4   NKSKALQAALSQIEKQFGKNTVMRLGDNT--VQAVEAVSTGSLTLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ L  IAQ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD G
Sbjct: 62  EIYGPESSGKTTMTLQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T + 
Sbjct: 122 EQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNA 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G +K+ D I G++T
Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIIGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNKMA PFK+  F I+YG+G +  GEL+DL V+  IV K+GAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKMAPPFKEAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
            N      EN ++A  IE ++R+  
Sbjct: 302 NNVIRHFEENPQMAGEIEKIIREQL 326


>gi|225630783|ref|YP_002727574.1| recombinase A [Wolbachia sp. wRi]
 gi|254790456|sp|C0R4E1|RECA_WOLWR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|225592764|gb|ACN95783.1| recombinase A [Wolbachia sp. wRi]
          Length = 355

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 217/350 (62%), Positives = 281/350 (80%), Gaps = 2/350 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M    E    DK KAL+ A+SQI++ +GKGAIM+L  + +  E I+ +S+GS+ LD ALG
Sbjct: 1   MASNPEERNSDKQKALDNAISQIEKAFGKGAIMKL--KQNPVEKIDTISTGSIALDSALG 58

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG PKGRI+EI+GPESSGKTTLALH IA++QK GG+CAF+DAEHALD +YARKLGV   
Sbjct: 59  VGGLPKGRIIEIFGPESSGKTTLALHVIAEAQKKGGSCAFIDAEHALDVLYARKLGVSTD 118

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +L+ISQPDTGEQAL I + LV SGAVD+IVIDSVAALTPRAEIEGDMG+   G+QARL+S
Sbjct: 119 DLVISQPDTGEQALHIVEYLVCSGAVDVIVIDSVAALTPRAEIEGDMGDQHMGLQARLLS 178

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
             LRKLTS++S++ CIL+FINQ+RMKIGV++G+PETTTGGNALKFY+SVRLDIR++G IK
Sbjct: 179 HGLRKLTSAVSKANCILIFINQIRMKIGVVYGNPETTTGGNALKFYTSVRLDIRKIGVIK 238

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           DK++ITGN+TRVKVVKNK+A PF++ +FDIMY EGIS  GE+ID+G K  +++K+GA++S
Sbjct: 239 DKENITGNETRVKVVKNKVAPPFREAKFDIMYNEGISKLGEIIDMGAKLGVLEKAGAYYS 298

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           +   RLGQGREN K +L+ N E+A  IE+ +R       +S++ +     
Sbjct: 299 YNNTRLGQGRENVKTYLKTNKEVANEIETKIRDLLRNHDNSIIIDEDSEQ 348


>gi|218133715|ref|ZP_03462519.1| hypothetical protein BACPEC_01584 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991090|gb|EEC57096.1| hypothetical protein BACPEC_01584 [Bacteroides pectinophilus ATCC
           43243]
          Length = 372

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 201/353 (56%), Positives = 273/353 (77%), Gaps = 3/353 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   DK KAL+AA++ I++ +GKG +M+LG   +    +E V +GSLGLD+ALG+GG P+
Sbjct: 1   MANEDKLKALDAAINNIEKQFGKGTVMKLGDSSANMN-VETVPTGSLGLDLALGVGGLPR 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++EIYGPESSGKTT+ALH +A+ QK GG   F+DAEHALD +YA+ +GVD+ NL ISQ
Sbjct: 60  GRVIEIYGPESSGKTTVALHVVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT+ +VRSGAVDI+V+DSVAAL P+AEI+G+MG++  G QARLMSQA+RKL
Sbjct: 120 PDCGEQALEITETMVRSGAVDIVVVDSVAALVPKAEIDGNMGDATMGQQARLMSQAMRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T   S + CI++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLD+RR+ +IK  D   
Sbjct: 180 TPVASSNNCIVIFINQIRQKIGVMFGNPETTTGGNALKFYASVRLDVRRITTIKSGDEAV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN  +VKVVKNK+A PFK+ EFDIM+G+GIS  G++ID+  K  I+ KSG+WF++ G+++
Sbjct: 240 GNHVKVKVVKNKVAPPFKEAEFDIMFGKGISKSGDVIDIAAKDDIIQKSGSWFAYNGEKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV--ADSLLQEPAINTKDDADKD 357
           GQGREN+K +L E+ ++ E + + ++Q  G+   A+ +      + K D+  D
Sbjct: 300 GQGRENAKKYLDEHPDVMEEVVAKVKQAHGIGINAEDVKNNSKADGKADSKAD 352


>gi|59801158|ref|YP_207870.1| recombinase A [Neisseria gonorrhoeae FA 1090]
 gi|194098701|ref|YP_002001763.1| recombinase A [Neisseria gonorrhoeae NCCP11945]
 gi|254493796|ref|ZP_05106967.1| recombinase A [Neisseria gonorrhoeae 1291]
 gi|268594853|ref|ZP_06129020.1| recombinase A [Neisseria gonorrhoeae 35/02]
 gi|268596767|ref|ZP_06130934.1| recombinase A [Neisseria gonorrhoeae FA19]
 gi|268599071|ref|ZP_06133238.1| recA [Neisseria gonorrhoeae MS11]
 gi|268601424|ref|ZP_06135591.1| recA [Neisseria gonorrhoeae PID18]
 gi|268603755|ref|ZP_06137922.1| recA [Neisseria gonorrhoeae PID1]
 gi|268682224|ref|ZP_06149086.1| recA [Neisseria gonorrhoeae PID332]
 gi|268684375|ref|ZP_06151237.1| recA [Neisseria gonorrhoeae SK-92-679]
 gi|268686696|ref|ZP_06153558.1| recA [Neisseria gonorrhoeae SK-93-1035]
 gi|291043741|ref|ZP_06569457.1| recombinase A [Neisseria gonorrhoeae DGI2]
 gi|293399025|ref|ZP_06643190.1| recombinase A [Neisseria gonorrhoeae F62]
 gi|2851591|sp|P21152|RECA_NEIGO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|76363336|sp|Q5F8M9|RECA_NEIG1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238690210|sp|B4RLX8|RECA_NEIG2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|59718053|gb|AAW89458.1| putative RecA protein [Neisseria gonorrhoeae FA 1090]
 gi|193933991|gb|ACF29815.1| recombinase A [Neisseria gonorrhoeae NCCP11945]
 gi|226512836|gb|EEH62181.1| recombinase A [Neisseria gonorrhoeae 1291]
 gi|268548242|gb|EEZ43660.1| recombinase A [Neisseria gonorrhoeae 35/02]
 gi|268550555|gb|EEZ45574.1| recombinase A [Neisseria gonorrhoeae FA19]
 gi|268583202|gb|EEZ47878.1| recA [Neisseria gonorrhoeae MS11]
 gi|268585555|gb|EEZ50231.1| recA [Neisseria gonorrhoeae PID18]
 gi|268587886|gb|EEZ52562.1| recA [Neisseria gonorrhoeae PID1]
 gi|268622508|gb|EEZ54908.1| recA [Neisseria gonorrhoeae PID332]
 gi|268624659|gb|EEZ57059.1| recA [Neisseria gonorrhoeae SK-92-679]
 gi|268626980|gb|EEZ59380.1| recA [Neisseria gonorrhoeae SK-93-1035]
 gi|291012204|gb|EFE04193.1| recombinase A [Neisseria gonorrhoeae DGI2]
 gi|291610439|gb|EFF39549.1| recombinase A [Neisseria gonorrhoeae F62]
 gi|317164298|gb|ADV07839.1| recombinase A [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 348

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 221/351 (62%), Positives = 282/351 (80%), Gaps = 6/351 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKSKAL AAL+QI++ +GKGAIM++       E +EV+S+GSLGLD+ALG+GG P+GRIV
Sbjct: 4   DKSKALAAALAQIEKSFGKGAIMKM-DGSQQEENLEVISTGSLGLDLALGVGGLPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  +AQ QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDTG
Sbjct: 63  EIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG +D++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  I
Sbjct: 123 EQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGHI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR GSIK  + + GN+T
Sbjct: 183 KKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+GVK  I++KSGAW+S+ G ++GQG+
Sbjct: 243 RVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           +N +++L+EN EI++ I++ +R   G+            T+D+ D +  + 
Sbjct: 303 DNVRVWLKENPEISDEIDAKIRALNGV-----EMHITEGTQDETDGERPEE 348


>gi|15603682|ref|NP_246756.1| recombinase A [Pasteurella multocida subsp. multocida str. Pm70]
 gi|3219853|sp|P95526|RECA_PASMU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|1772591|emb|CAA67699.1| RecA protein [Pasteurella multocida]
 gi|12722240|gb|AAK03901.1| RecA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 354

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 217/350 (62%), Positives = 278/350 (79%), Gaps = 2/350 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K+KAL AAL QI++ +GKG+IM+LG   ++   +E VS+GSL LD+ALGIGG P GRIV
Sbjct: 6   EKNKALAAALGQIEKQFGKGSIMKLGDTQAL--DVEAVSTGSLSLDVALGIGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IAQ+QK G TCAF+DAEHALD IYA KLGV++  LL+SQPD G
Sbjct: 64  EIFGPESSGKTTLTLSVIAQAQKEGKTCAFIDAEHALDPIYAAKLGVNVNELLVSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVD+I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT  I
Sbjct: 124 EQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLTGQI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+T
Sbjct: 184 KNSNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVIGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PF+QV+F I+YG+GIS  GELI+LGVK  +VDK+GAW+++ G+++GQG+
Sbjct: 244 RVKVVKNKVAAPFRQVDFQILYGQGISKTGELIELGVKHKLVDKAGAWYAYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
            N+  +L E+ E A  +E+ LR       + +L        + +   + D
Sbjct: 304 ANAMKWLEEHPEEALALETKLRNELLANPEKVLAADIAEKNESSTGLEAD 353


>gi|42520858|ref|NP_966773.1| recombinase A [Wolbachia endosymbiont of Drosophila melanogaster]
 gi|60393632|sp|P62222|RECA_WOLPM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|42410598|gb|AAS14707.1| recA protein [Wolbachia endosymbiont of Drosophila melanogaster]
          Length = 355

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 218/350 (62%), Positives = 281/350 (80%), Gaps = 2/350 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M    E    DK KAL+ A+SQI++ +GKGAIM+L  + +  E I+ +S+GS+ LD ALG
Sbjct: 1   MASNPEERNSDKQKALDNAISQIEKAFGKGAIMKL--KQNPVEKIDTISTGSIALDSALG 58

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG PKGRI+EI+GPESSGKTTLALH IA++QK GG+CAF+DAEHALD +YARKLGV   
Sbjct: 59  VGGLPKGRIIEIFGPESSGKTTLALHVIAEAQKKGGSCAFIDAEHALDVLYARKLGVSTD 118

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +L+ISQPDTGEQAL I + LV SGAVD+IVIDSVAALTPRAEIEGDMG+   G+QARL+S
Sbjct: 119 DLVISQPDTGEQALHIVEYLVCSGAVDVIVIDSVAALTPRAEIEGDMGDQHMGLQARLLS 178

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
             LRKLTS++S++ CIL+FINQ+RMKIGV++G+PETTTGGNALKFY+SVRLDIR+VG IK
Sbjct: 179 HGLRKLTSAVSKANCILIFINQIRMKIGVVYGNPETTTGGNALKFYTSVRLDIRKVGVIK 238

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           DK++ITGN+TRVKVVKNK+A PF++ +FDIMY EGIS  GE+ID+G K  +++K+GA++S
Sbjct: 239 DKENITGNETRVKVVKNKVAPPFREAKFDIMYNEGISKLGEIIDMGAKLGVLEKAGAYYS 298

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           +   RLGQGREN K +L+ N E+A  IE+ +R       +S++ +     
Sbjct: 299 YNNTRLGQGRENVKTYLKTNKEVANEIETKIRDLLRNHDNSIIIDEDSEQ 348


>gi|49087284|gb|AAT51440.1| PA3617 [synthetic construct]
          Length = 347

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 215/347 (61%), Positives = 277/347 (79%), Gaps = 4/347 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKRALAAALGQIERQFGKGAVMRMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAEAQKQGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF+Q EF I+YG+GI   GE+IDLGV+  +V+KSGAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKVSPPFRQAEFQILYGKGIYRTGEIIDLGVQLGLVEKSGAWYSYQGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
            N+  +L +N EI   +E  +R    L+A S   +       DA+ D
Sbjct: 302 ANAAKYLEDNPEIGSVLEKTIRDQ--LLAKSGPVKADAEEVADAEAD 346


>gi|170723191|ref|YP_001750879.1| recombinase A [Pseudomonas putida W619]
 gi|229619922|sp|B1JDA2|RECA_PSEPW RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|169761194|gb|ACA74510.1| recA protein [Pseudomonas putida W619]
          Length = 355

 Score =  364 bits (933), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 210/325 (64%), Positives = 268/325 (82%), Gaps = 2/325 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI+R +GKGA+M++G       GI  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKRALAAALGQIERQFGKGAVMRMGDHERT--GIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK+G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAEAQKSGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK++ PF+Q EF I+YG+GI   GE+IDLGV   +V+KSGAW++++G ++GQG+
Sbjct: 242 RVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYAYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
            N+  +L+EN  I   IE  +R+  
Sbjct: 302 ANAAKYLQENPAIGAEIEKQIREKL 326


>gi|160892548|ref|ZP_02073338.1| hypothetical protein CLOL250_00077 [Clostridium sp. L2-50]
 gi|156865589|gb|EDO59020.1| hypothetical protein CLOL250_00077 [Clostridium sp. L2-50]
          Length = 344

 Score =  364 bits (933), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 192/328 (58%), Positives = 261/328 (79%), Gaps = 1/328 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ YGKG++M+LG   +    IEV+ +GSL LDIALG+GG P+GRI+E++GPESSGKT
Sbjct: 17  QIEKQYGKGSVMKLGDSSANMN-IEVIPTGSLSLDIALGLGGVPRGRIIEVFGPESSGKT 75

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ALH +A+ QK GG   F+DAEHALD +YA+ +GV++ +L ISQPD GEQALEIT+ +V
Sbjct: 76  TVALHIVAEIQKRGGIAGFIDAEHALDPVYAKNIGVNIDDLYISQPDCGEQALEITETMV 135

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD+I++DSVAAL P+AEI+G+MG+S  G+ ARLMSQALRKLT+ +S++ C+++FIN
Sbjct: 136 RSGAVDVIIVDSVAALVPKAEIDGEMGDSHMGLHARLMSQALRKLTAVVSKTNCVVIFIN 195

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+R K+GV+FG+PE TTGG ALKFY+SVR+D+RR+ ++K    I GN+TRVKVVKNK+A 
Sbjct: 196 QLREKVGVVFGNPEVTTGGRALKFYASVRMDVRRIDTLKMGGEIVGNRTRVKVVKNKVAP 255

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PFK+ EFDIM+G+GIS  G+++DL V   IVDKSGAW+++ G ++GQGREN+K FL EN 
Sbjct: 256 PFKEAEFDIMFGKGISREGDILDLAVANDIVDKSGAWYAYMGDKIGQGRENAKAFLAENQ 315

Query: 322 EIAENIESLLRQNAGLVADSLLQEPAIN 349
            I + I+  +R+  GLV     +E    
Sbjct: 316 AICDEIDEKIREKLGLVESEDAEEKGTE 343


>gi|308235288|ref|ZP_07666025.1| recombinase A [Gardnerella vaginalis ATCC 14018]
 gi|311114751|ref|YP_003985972.1| recombination protein A [Gardnerella vaginalis ATCC 14019]
 gi|310946245|gb|ADP38949.1| recombination protein A [Gardnerella vaginalis ATCC 14019]
          Length = 384

 Score =  364 bits (933), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 199/330 (60%), Positives = 264/330 (80%), Gaps = 2/330 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  ALE AL+ +++ YGKG+ M+LG +    + +EV+ +GS+ LD+ALGIGG P+GRIVE
Sbjct: 23  RKAALETALANVEKQYGKGSAMRLGDKP--LQDVEVIPTGSIALDMALGIGGVPRGRIVE 80

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTLALH +A +QK GG  AF+DAEHALD +YARKLGVD  +L++SQPD GE
Sbjct: 81  VYGPESSGKTTLALHIVANAQKNGGIAAFIDAEHALDPVYARKLGVDTDSLIVSQPDNGE 140

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DML+RSGA+D+IV+DSVAAL P+AEI+GDMG+S  G+QARLMSQALRK+T ++S
Sbjct: 141 QALEIADMLIRSGALDVIVVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKMTGALS 200

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGV FG+PETTTGG ALKFYSSVR+DIRRV +IK+ +   GN+T+
Sbjct: 201 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYSSVRMDIRRVSTIKNGEEAVGNRTK 260

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNKMA PFK  EFD++YGEGIS  G +ID+ V+  ++ KSG+WF+++G++LGQGRE
Sbjct: 261 VKIVKNKMAPPFKTAEFDVLYGEGISTEGSVIDMAVQCDVIKKSGSWFTYEGEQLGQGRE 320

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADS 341
           N + FL++N  I E I   ++   GL+   
Sbjct: 321 NVRQFLKDNPAITEEISDKVKVAFGLMKPE 350


>gi|28871176|ref|NP_793795.1| recA protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213969154|ref|ZP_03397293.1| recombinase A [Pseudomonas syringae pv. tomato T1]
 gi|301383952|ref|ZP_07232370.1| recombinase A [Pseudomonas syringae pv. tomato Max13]
 gi|302064162|ref|ZP_07255703.1| recombinase A [Pseudomonas syringae pv. tomato K40]
 gi|302134752|ref|ZP_07260742.1| recombinase A [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|37537940|sp|Q87XY7|RECA_PSESM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|28854426|gb|AAO57490.1| recA protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213926152|gb|EEB59708.1| recombinase A [Pseudomonas syringae pv. tomato T1]
 gi|330872692|gb|EGH06841.1| recombinase A [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
 gi|330967904|gb|EGH68164.1| recombinase A [Pseudomonas syringae pv. actinidiae str. M302091]
 gi|331016403|gb|EGH96459.1| recombinase A [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 354

 Score =  364 bits (933), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 213/325 (65%), Positives = 265/325 (81%), Gaps = 2/325 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE++DL V    V+KSGAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYLNGEIVDLAVLHGFVEKSGAWYSYQGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
            NS  FL +N EI + +E  +R   
Sbjct: 302 ANSAKFLADNPEICKALEKQIRDKL 326


>gi|187478799|ref|YP_786823.1| recombinase A [Bordetella avium 197N]
 gi|123738620|sp|Q2KYE8|RECA_BORA1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|115423385|emb|CAJ49919.1| RecA protein (recombinase A) [Bordetella avium 197N]
          Length = 353

 Score =  364 bits (933), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 225/332 (67%), Positives = 277/332 (83%), Gaps = 1/332 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+ G    +   I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 22  QIEKQFGKGSIMRYGDN-EVEHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 80

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGTCAFVDAEHALD  YA KLGV+L +LLISQPDTGEQALEITD LV
Sbjct: 81  TLTLQVIAEMQKVGGTCAFVDAEHALDVQYASKLGVNLGDLLISQPDTGEQALEITDALV 140

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG+VD+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT++I R+ C+++FIN
Sbjct: 141 RSGSVDLIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTATIKRTNCMVIFIN 200

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK+A 
Sbjct: 201 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKGDEVVGNETRVKVVKNKVAP 260

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PFKQ EFDIMYG GIS  GE+IDLGV A++++KSGAW+S+ G R+GQG++N + +L+EN 
Sbjct: 261 PFKQAEFDIMYGAGISREGEIIDLGVAANVIEKSGAWYSYSGNRIGQGKDNVREYLKENR 320

Query: 322 EIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
            +A  IE+ +R N G+VA +    P      +
Sbjct: 321 AMAIEIENKIRDNQGIVARAAEFAPTAEESAE 352


>gi|16125339|ref|NP_419903.1| recombinase A [Caulobacter crescentus CB15]
 gi|221234078|ref|YP_002516514.1| recombinase A [Caulobacter crescentus NA1000]
 gi|20178056|sp|Q9A9A7|RECA_CAUCR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|254790426|sp|B8H3I7|RECA_CAUCN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|13422391|gb|AAK23071.1| recA protein [Caulobacter crescentus CB15]
 gi|220963250|gb|ACL94606.1| RecA protein [Caulobacter crescentus NA1000]
          Length = 356

 Score =  364 bits (933), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 236/347 (68%), Positives = 290/347 (83%), Gaps = 2/347 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
               DK +ALEAAL+QI R +GKG++M+LG +G +   IE VS+GSLGLDIALGIGG PK
Sbjct: 12  KEEGDKQRALEAALAQIDRAFGKGSVMKLGEKGKV--EIESVSTGSLGLDIALGIGGLPK 69

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVE+YGPESSGKTTLALH +A+ QK GGT AFVDAEHALD  YA KLGV+L NLL+SQ
Sbjct: 70  GRIVEVYGPESSGKTTLALHVVAEVQKAGGTAAFVDAEHALDPSYAYKLGVNLDNLLVSQ 129

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEITD LVRSGAVDI+V+DSVAALTP+AEIEG+MG+SLPG+QARLMSQALRKL
Sbjct: 130 PDNGEQALEITDTLVRSGAVDIVVVDSVAALTPKAEIEGEMGDSLPGLQARLMSQALRKL 189

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+SI+++  I++FINQ+R KIGVM+GSPETTTGGNALKFY+SVRLDIRR GS+K +D I 
Sbjct: 190 TASINKANTIVIFINQIRHKIGVMYGSPETTTGGNALKFYASVRLDIRRTGSVKARDEIV 249

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN  RVKVVKNK+A PF++VEFDIMYGEGIS  GE+IDLGVKA I+DK+G+WFS+  QR+
Sbjct: 250 GNNVRVKVVKNKVAPPFREVEFDIMYGEGISKLGEVIDLGVKAGIIDKAGSWFSYGSQRI 309

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           GQGR+N + FL+ N ++A +IE  +R+++  + + LL       ++D
Sbjct: 310 GQGRDNVREFLKNNPDVAADIEKAVRKSSQKIEEELLVGGPEEGEED 356


>gi|296837359|gb|ADH59538.1| DNA recombinase [Burkholderia cenocepacia]
          Length = 312

 Score =  364 bits (933), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 219/313 (69%), Positives = 272/313 (86%), Gaps = 1/313 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESLLRQNA 335
           IA  IE+ +R++ 
Sbjct: 300 IAREIENRIRESL 312


>gi|2760914|gb|AAC38570.1| RecA protein [Chloroflexus aurantiacus J-10-fl]
          Length = 351

 Score =  364 bits (933), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 205/345 (59%), Positives = 268/345 (77%), Gaps = 3/345 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +K KAL A ++QI R +GKG+IM++G   S    IE + +GS+ LDIALGIGG P+GR
Sbjct: 4   TPEKEKALAATMAQIDRKFGKGSIMKMGEASSRV-AIEAIPTGSIALDIALGIGGVPRGR 62

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEI+GPESSGKTTLA H IA++QK GG CAF+DAEHA D +YA + GV++ +LL+SQPD
Sbjct: 63  VVEIFGPESSGKTTLAQHIIAEAQKMGGVCAFIDAEHAFDPVYAARCGVNIDDLLVSQPD 122

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI +MLVRS A+D+IVIDSVAAL PRAEIEG+MG+S+PGMQARLMSQALRKL+ 
Sbjct: 123 TGEQALEICEMLVRSNAIDVIVIDSVAALVPRAEIEGEMGDSMPGMQARLMSQALRKLSG 182

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +IS+S+ +++FINQ+RMKIGVM G+PETTTGG ALKFY+SVRLDIRRV ++K      G+
Sbjct: 183 AISKSRTVVIFINQLRMKIGVMLGTPETTTGGQALKFYTSVRLDIRRVETLKQGQEAIGS 242

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + RVKV+KNK+A P++Q EFDI+  EGIS  G +ID+G +  I+ KSGAWF     RLGQ
Sbjct: 243 RVRVKVIKNKVAPPYRQAEFDILANEGISREGNIIDIGTELGIIRKSGAWFYLGEDRLGQ 302

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           GREN + FL+ N  + + IE L++  A  + +  +  P+++  DD
Sbjct: 303 GRENVREFLKNNPALTDEIERLIKAQA--LTNPTVIAPSVDVGDD 345


>gi|296803052|gb|ADH51602.1| DNA recombinase [Burkholderia contaminans]
          Length = 313

 Score =  364 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 220/314 (70%), Positives = 273/314 (86%), Gaps = 1/314 (0%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           + +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL 
Sbjct: 1   KQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLT 59

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG
Sbjct: 60  LQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSG 119

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           ++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+R
Sbjct: 120 SIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIR 179

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF+
Sbjct: 180 MKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFR 239

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           +  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA
Sbjct: 240 EAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIA 299

Query: 325 ENIESLLRQNAGLV 338
             IE+ +R++ G+V
Sbjct: 300 REIENRIRESLGVV 313


>gi|224551705|gb|ACN54252.1| RecA [Burkholderia sp. MexII-219]
          Length = 319

 Score =  364 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 221/317 (69%), Positives = 274/317 (86%), Gaps = 1/317 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L
Sbjct: 4   QFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTL 62

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+
Sbjct: 63  QVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGS 122

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RM
Sbjct: 123 IDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRM 182

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++
Sbjct: 183 KIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRE 242

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
             FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA 
Sbjct: 243 AIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAR 302

Query: 326 NIESLLRQNAGLVADSL 342
            IE+ +R++ G+VA  +
Sbjct: 303 EIENRIRESLGVVASPM 319


>gi|288802767|ref|ZP_06408205.1| protein RecA [Prevotella melaninogenica D18]
 gi|288334917|gb|EFC73354.1| protein RecA [Prevotella melaninogenica D18]
          Length = 341

 Score =  364 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 203/323 (62%), Positives = 266/323 (82%), Gaps = 2/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+AA+S+I++ +GKG+IM++G +    E +EV+ +GS+ LD ALG+GG+P+GRI+E
Sbjct: 15  KLKALQAAMSKIEKDFGKGSIMRMGDEQ--IEQVEVIPTGSVALDTALGVGGYPRGRIIE 72

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL +SQPD GE
Sbjct: 73  IYGPESSGKTTLAIHAIAEAQKQGGIAAFIDAEHAFDRFYAEKLGVDVDNLWVSQPDNGE 132

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RS A+DI+V+DSVAALTP+ EIEGDMG+S  G+QARLMSQALRKLTS+I+
Sbjct: 133 QALEIADQLIRSSAIDILVVDSVAALTPKKEIEGDMGDSAVGLQARLMSQALRKLTSTIA 192

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIG+MFG+PETTTGGNALKFYSSVRLDIRR+ SIKD D + GNQ R
Sbjct: 193 KTNTCCIFINQLREKIGMMFGNPETTTGGNALKFYSSVRLDIRRITSIKDGDQVIGNQVR 252

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNK+A PF++ EF+I +GEGIS  GE++DLGV+  I+ KSG+WFS+ G +L QGR+
Sbjct: 253 VKIVKNKVAPPFRKAEFEITFGEGISKIGEIVDLGVQYGIIQKSGSWFSYNGTKLAQGRD 312

Query: 312 NSKIFLRENIEIAENIESLLRQN 334
            +K  +++N E+AE +E L++  
Sbjct: 313 ATKAMIKDNPELAEELEGLIKNA 335


>gi|237800182|ref|ZP_04588643.1| recombinase A [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331023039|gb|EGI03096.1| recombinase A [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 354

 Score =  364 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 213/325 (65%), Positives = 265/325 (81%), Gaps = 2/325 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE++DL V    V+KSGAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYLNGEIVDLAVLHGFVEKSGAWYSYQGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
            NS  FL +N EI + +E  +R   
Sbjct: 302 ANSAKFLADNPEICKALEKQIRDKL 326


>gi|330975359|gb|EGH75425.1| recombinase A [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 354

 Score =  364 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 216/350 (61%), Positives = 274/350 (78%), Gaps = 5/350 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE++DL V     +KSGAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYLNGEIVDLAVLHGFFEKSGAWYSYQGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNA---GLVADSLLQEPAINTKDDADKD 357
            NS  FL +N EI + +E  +R      G+   ++    A+   D ++ D
Sbjct: 302 ANSAKFLADNPEICKALEKQIRDKLLTPGVDTKAVGSREAVAADDMSEAD 351


>gi|296803010|gb|ADH51581.1| DNA recombinase [Burkholderia contaminans]
          Length = 315

 Score =  364 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 220/315 (69%), Positives = 273/315 (86%), Gaps = 1/315 (0%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           + +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL 
Sbjct: 1   KQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLT 59

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG
Sbjct: 60  LQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSG 119

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           ++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+R
Sbjct: 120 SIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIR 179

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF+
Sbjct: 180 MKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFR 239

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           +  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA
Sbjct: 240 EAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIA 299

Query: 325 ENIESLLRQNAGLVA 339
             IE+ +R++ G+V 
Sbjct: 300 REIENRIRESLGVVT 314


>gi|296803092|gb|ADH51622.1| DNA recombinase [Burkholderia contaminans]
          Length = 312

 Score =  364 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 219/313 (69%), Positives = 272/313 (86%), Gaps = 1/313 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESLLRQNA 335
           IA  IE+ +R++ 
Sbjct: 300 IAREIENRIRESL 312


>gi|157326935|gb|ABV44580.1| RecA [Burkholderia multivorans]
 gi|157326941|gb|ABV44583.1| RecA [Burkholderia multivorans]
 gi|157326943|gb|ABV44584.1| RecA [Burkholderia multivorans]
 gi|157326945|gb|ABV44585.1| RecA [Burkholderia multivorans]
          Length = 312

 Score =  364 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 219/313 (69%), Positives = 273/313 (87%), Gaps = 1/313 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI
Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299

Query: 324 AENIESLLRQNAG 336
           A  IE+ +R++ G
Sbjct: 300 AREIENRIRESLG 312


>gi|126698927|ref|YP_001087824.1| recombinase A [Clostridium difficile 630]
 gi|254974873|ref|ZP_05271345.1| RecA protein (recombinase A) [Clostridium difficile QCD-66c26]
 gi|255092260|ref|ZP_05321738.1| RecA protein (recombinase A) [Clostridium difficile CIP 107932]
 gi|255100349|ref|ZP_05329326.1| RecA protein (recombinase A) [Clostridium difficile QCD-63q42]
 gi|255306286|ref|ZP_05350457.1| RecA protein (recombinase A) [Clostridium difficile ATCC 43255]
 gi|255314000|ref|ZP_05355583.1| RecA protein (recombinase A) [Clostridium difficile QCD-76w55]
 gi|255516680|ref|ZP_05384356.1| RecA protein (recombinase A) [Clostridium difficile QCD-97b34]
 gi|255649779|ref|ZP_05396681.1| RecA protein (recombinase A) [Clostridium difficile QCD-37x79]
 gi|260682936|ref|YP_003214221.1| recombinase A [Clostridium difficile CD196]
 gi|260686534|ref|YP_003217667.1| RecA protein (recombinase A) [Clostridium difficile R20291]
 gi|306519883|ref|ZP_07406230.1| RecA protein (recombinase A) [Clostridium difficile QCD-32g58]
 gi|122974146|sp|Q18BJ4|RECA_CLOD6 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|115250364|emb|CAJ68186.1| Protein RecA (Recombinase A) [Clostridium difficile]
 gi|260209099|emb|CBA62262.1| RecA protein (recombinase A) [Clostridium difficile CD196]
 gi|260212550|emb|CBE03518.1| RecA protein (recombinase A) [Clostridium difficile R20291]
          Length = 348

 Score =  364 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 205/341 (60%), Positives = 270/341 (79%), Gaps = 2/341 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL  AL +I++ +GKG++M+LG   S+   I+V+S+G++GLDIA+GIGG P+GRIV
Sbjct: 6   EKLKALNEALGKIEKDFGKGSVMKLGEATSM--SIDVISTGAIGLDIAIGIGGLPRGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+AL  +A +QK GG  AF+DAEHALD +YA+ LGVD+ NL+ISQPDTG
Sbjct: 64  EVYGPESSGKTTVALSCVASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L+RSGA+DIIVIDSVAAL P+AEI+GDMG+S  G+QARLMSQALRKLT SI
Sbjct: 124 EQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKLTGSI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+R K+G+MFG+PETTTGG ALKFYSSVRLD+R++ +IK  D + G++T
Sbjct: 184 KKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIGSRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDIMYGEGIS  G+L+D+     IV KSG+W+S+   +LGQGR
Sbjct: 244 RVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           EN K FL +N+++   I+  +R    L  +      +++ +
Sbjct: 304 ENVKKFLEDNLDLTTEIDEKVRAFYNLNEEHEESGTSVSKE 344


>gi|71062458|gb|AAZ21461.1| recA protein [Candidatus Pelagibacter ubique HTCC1062]
          Length = 358

 Score =  364 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 221/348 (63%), Positives = 286/348 (82%), Gaps = 2/348 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           ++AA+SQI   +GKG++M+LG + ++   +E +S+GSL LD+ALGIGG PKGR++E+YGP
Sbjct: 1   MDAAMSQIIDNFGKGSVMKLGQRRAM--DVESISTGSLSLDVALGIGGLPKGRVIEVYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL  +A++QK GG CAF+DAEHALD IYA+KLGVD + LLISQPDTGEQALE
Sbjct: 59  ESSGKTTLALQVLAEAQKAGGICAFIDAEHALDPIYAKKLGVDTEELLISQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D LV+SG++ +IVIDSVAALTPRAEIEG+MG+   G+Q+RLMSQALRKLT SIS +  
Sbjct: 119 IADTLVKSGSISVIVIDSVAALTPRAEIEGEMGDHHVGLQSRLMSQALRKLTGSISSTNT 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           +++FINQ+RMKIGVMFGSPETT+GGNALKFYSSVR+DIRR+G+IK+ D I GN TRVKVV
Sbjct: 179 MMIFINQIRMKIGVMFGSPETTSGGNALKFYSSVRMDIRRIGAIKNGDEIIGNSTRVKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK+A PFK VEFD+MYG+GIS  GEL+DLG KA IV+K+GAW+++KG+++GQGREN+K 
Sbjct: 239 KNKVAPPFKVVEFDLMYGKGISKVGELVDLGSKADIVEKAGAWYAYKGEKIGQGRENAKT 298

Query: 316 FLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           +L +N +IA  IE  +R+ AG++A  +   P    K   D+ +   +E
Sbjct: 299 YLEQNPKIAAEIEMAIREKAGVIAKKIEGNPLDPEKAAKDQIEEPKLE 346


>gi|283783473|ref|YP_003374227.1| RecA protein [Gardnerella vaginalis 409-05]
 gi|298252554|ref|ZP_06976348.1| RecA/RadA DNA recombinase [Gardnerella vaginalis 5-1]
 gi|283442058|gb|ADB14524.1| RecA protein [Gardnerella vaginalis 409-05]
 gi|297532918|gb|EFH71802.1| RecA/RadA DNA recombinase [Gardnerella vaginalis 5-1]
          Length = 379

 Score =  364 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 204/344 (59%), Positives = 269/344 (78%), Gaps = 4/344 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  ALE AL+ ++R YGKG+ M+LG +    + +EV+ +GSL LD ALGIGG P+GRIVE
Sbjct: 23  RQAALETALANVERQYGKGSAMRLGDRP--MQDVEVIPTGSLALDTALGIGGVPRGRIVE 80

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTLALH +A +QK GG  AF+DAEHALD +YARKLGVD   L++SQPD GE
Sbjct: 81  VYGPESSGKTTLALHIVANAQKNGGVAAFIDAEHALDPVYARKLGVDTDALIVSQPDNGE 140

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DML+RSGA+D+IV+DSVAAL P+AEI+GDMG+S  G+QARLMSQALRK+T ++S
Sbjct: 141 QALEIADMLIRSGALDVIVVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKMTGALS 200

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGV FG+PETTTGG ALKFY+SVR+DIRRV +IK+ +   GN+T+
Sbjct: 201 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRMDIRRVSTIKEGEEAVGNRTK 260

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNKMA PFK  EFD++YGEGIS  G +ID+G++A ++ KSG+WF++ G++LGQGRE
Sbjct: 261 VKIVKNKMAPPFKTAEFDVLYGEGISTEGSVIDMGLQAEVIKKSGSWFTYDGEQLGQGRE 320

Query: 312 NSKIFLRENIEIAENIESLLRQNAGL--VADSLLQEPAINTKDD 353
           N + FL++N  I E I   ++   GL    D   ++  ++  DD
Sbjct: 321 NVRKFLKDNPAITEEISEKVKALLGLMHTEDQFAEDSELDQFDD 364


>gi|227524327|ref|ZP_03954376.1| recombination protein A [Lactobacillus hilgardii ATCC 8290]
 gi|227088558|gb|EEI23870.1| recombination protein A [Lactobacillus hilgardii ATCC 8290]
          Length = 380

 Score =  364 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 193/342 (56%), Positives = 266/342 (77%), Gaps = 2/342 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL  I++ +GKG+IM++G +      I  + +GSL LD ALG+GG+P+GRIVE
Sbjct: 5   RKVALDKALKSIEKEFGKGSIMRMGDKADT--QISTIPTGSLALDEALGVGGYPRGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGE
Sbjct: 63  VYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q L+ITD LV SGA+DI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +IS
Sbjct: 123 QGLQITDTLVTSGAIDIVVIDSVAALVPRAEIEGEMGDTHVGLQARLMSQALRKLSGTIS 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++K I +FINQ+R K+GVMFG+PETT GG ALKFY+++RL+IRR   IK+  +I GN+ R
Sbjct: 183 KTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATIRLEIRRAEQIKNGTNIIGNRVR 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           +KVVKNK+A PFK+ E DIMYG+GIS  GEL+D+ V   I+DKSG+W+S+  +R+GQGRE
Sbjct: 243 IKVVKNKVAPPFKRAEVDIMYGKGISQSGELVDMAVDKDIIDKSGSWYSYGEERIGQGRE 302

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           N+K +L E+ ++ + +E  +R   G+  D+       ++ +D
Sbjct: 303 NAKGYLEEHQDMYKEVERKVRDAYGIPDDADTGNSTKDSSND 344


>gi|167769114|ref|ZP_02441167.1| hypothetical protein ANACOL_00437 [Anaerotruncus colihominis DSM
           17241]
 gi|167668754|gb|EDS12884.1| hypothetical protein ANACOL_00437 [Anaerotruncus colihominis DSM
           17241]
          Length = 392

 Score =  364 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 206/332 (62%), Positives = 272/332 (81%), Gaps = 2/332 (0%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           +  ++  D+ KALE AL QI++ +GKGA+M+LG   ++   +E +S+GSL LDIALGIGG
Sbjct: 15  KSGVSSEDRKKALETALGQIEKQFGKGAVMKLGQDSTL--NVEAISTGSLSLDIALGIGG 72

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P+GRI+EIYGPESSGKTT+ALH +AQ+QK GG+  F+D EHALD +YA+ LGVD+ +LL
Sbjct: 73  VPRGRIIEIYGPESSGKTTVALHVVAQAQKEGGSAVFIDVEHALDPVYAQALGVDIDSLL 132

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPDTGEQALEI + LVRSGA+D++V+DSVAA+  +AEIEGDMG+S  G+QARLMSQAL
Sbjct: 133 VSQPDTGEQALEICEALVRSGAIDVVVVDSVAAMVTKAEIEGDMGDSHVGLQARLMSQAL 192

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT +I +S C+++FINQ+R KIGVM+G+PETT GG ALKFY+SVRLD+RRV ++K+  
Sbjct: 193 RKLTGAIGKSNCVVIFINQLREKIGVMYGNPETTPGGRALKFYASVRLDVRRVEALKNGT 252

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+TRVKVVKNK++ PFK+ EFDIMYGEGIS  GE++DL  K  IV + G+WF++  
Sbjct: 253 ELIGNRTRVKVVKNKVSPPFKEAEFDIMYGEGISKVGEILDLATKLDIVVRGGSWFNYGE 312

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
            RLGQGR+N+K FL+ N EIA+ IE+ +R+NA
Sbjct: 313 TRLGQGRDNAKEFLKANPEIAQEIETKVRENA 344


>gi|16272543|ref|NP_438757.1| recombinase A [Haemophilus influenzae Rd KW20]
 gi|68249193|ref|YP_248305.1| recombinase A [Haemophilus influenzae 86-028NP]
 gi|145631869|ref|ZP_01787626.1| recombinase A [Haemophilus influenzae R3021]
 gi|145633990|ref|ZP_01789708.1| recombinase A [Haemophilus influenzae 3655]
 gi|145635971|ref|ZP_01791655.1| recombinase A [Haemophilus influenzae PittAA]
 gi|145637982|ref|ZP_01793620.1| recombinase A [Haemophilus influenzae PittHH]
 gi|145640575|ref|ZP_01796159.1| recombinase A [Haemophilus influenzae R3021]
 gi|148826752|ref|YP_001291505.1| recombinase A [Haemophilus influenzae PittEE]
 gi|148827785|ref|YP_001292538.1| recombinase A [Haemophilus influenzae PittGG]
 gi|229845740|ref|ZP_04465860.1| recombinase A [Haemophilus influenzae 6P18H1]
 gi|229847527|ref|ZP_04467620.1| recombinase A [Haemophilus influenzae 7P49H1]
 gi|260581460|ref|ZP_05849272.1| recombination protein RecA [Haemophilus influenzae RdAW]
 gi|260583237|ref|ZP_05851014.1| recombinase A [Haemophilus influenzae NT127]
 gi|319775389|ref|YP_004137877.1| RecA [Haemophilus influenzae F3047]
 gi|319897800|ref|YP_004135997.1| reca [Haemophilus influenzae F3031]
 gi|329122586|ref|ZP_08251166.1| recombination protein A [Haemophilus aegyptius ATCC 11116]
 gi|1172885|sp|P43705|RECA_HAEIN RecName: Full=Protein RecA; AltName: Full=Recombinase 1; AltName:
           Full=Recombinase A
 gi|76363332|sp|Q4QMV2|RECA_HAEI8 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166220648|sp|A5UEC1|RECA_HAEIE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166220649|sp|A5UH99|RECA_HAEIG RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|305382|gb|AAC36817.1| recombinase [Haemophilus influenzae]
 gi|1573588|gb|AAC22257.1| recA protein (recA) [Haemophilus influenzae Rd KW20]
 gi|68057392|gb|AAX87645.1| RecA [Haemophilus influenzae 86-028NP]
 gi|144982472|gb|EDJ90035.1| recombinase A [Haemophilus influenzae R3021]
 gi|144985136|gb|EDJ91991.1| recombinase A [Haemophilus influenzae 3655]
 gi|145266780|gb|EDK06800.1| recombinase A [Haemophilus influenzae PittAA]
 gi|145268827|gb|EDK08792.1| recombinase A [Haemophilus influenzae PittHH]
 gi|145275161|gb|EDK15023.1| recombinase A [Haemophilus influenzae 22.4-21]
 gi|148716912|gb|ABQ99122.1| recombinase A [Haemophilus influenzae PittEE]
 gi|148719027|gb|ABR00155.1| recombinase A [Haemophilus influenzae PittGG]
 gi|229809553|gb|EEP45282.1| recombinase A [Haemophilus influenzae 7P49H1]
 gi|229811334|gb|EEP47043.1| recombinase A [Haemophilus influenzae 6P18H1]
 gi|260091906|gb|EEW75857.1| recombination protein RecA [Haemophilus influenzae RdAW]
 gi|260093690|gb|EEW77601.1| recombinase A [Haemophilus influenzae NT127]
 gi|301169315|emb|CBW28914.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Haemophilus influenzae 10810]
 gi|309973891|gb|ADO97092.1| DNA recombination protein RecA [Haemophilus influenzae R2846]
 gi|317433306|emb|CBY81681.1| RecA [Haemophilus influenzae F3031]
 gi|317449980|emb|CBY86192.1| RecA [Haemophilus influenzae F3047]
 gi|327472689|gb|EGF18117.1| recombination protein A [Haemophilus aegyptius ATCC 11116]
          Length = 354

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 222/347 (63%), Positives = 282/347 (81%), Gaps = 2/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSLGLD+ALGIGG P GRIV
Sbjct: 6   EKQKALAAALGQIEKQFGKGSIMKLGDTKTL--DVESISTGSLGLDVALGIGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IAQ+QK G TCAF+DAEHALD IYA KLGVD+K L +SQPD G
Sbjct: 64  EIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAEHALDPIYAAKLGVDVKELFVSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGA+D+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT  I
Sbjct: 124 EQALEICDALVRSGAIDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTGQI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C++VFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR GS+KD ++I GN+T
Sbjct: 184 KNANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKDGENIIGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PF+QV+F I+YGEGIS  GEL++LGVK  +V+KSGAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKLAAPFRQVDFQILYGEGISKAGELLELGVKHKLVEKSGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
            NS  +L ENIE ++ +E+ LR       +  L      ++++ + +
Sbjct: 304 ANSMKWLNENIEKSDELEARLRAELVANPEQALMADIEQSENNTESE 350


>gi|227510184|ref|ZP_03940233.1| recombination protein A [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227513112|ref|ZP_03943161.1| recombination protein A [Lactobacillus buchneri ATCC 11577]
 gi|227083687|gb|EEI18999.1| recombination protein A [Lactobacillus buchneri ATCC 11577]
 gi|227190389|gb|EEI70456.1| recombination protein A [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 380

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 193/342 (56%), Positives = 266/342 (77%), Gaps = 2/342 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL  I++ +GKG+IM++G +      I  + +GSL LD ALG+GG+P+GRIVE
Sbjct: 5   RKVALDKALKSIEKEFGKGSIMRMGDKADT--QISTIPTGSLALDEALGVGGYPRGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGE
Sbjct: 63  VYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q L+ITD LV SGA+DI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +IS
Sbjct: 123 QGLQITDALVTSGAIDIVVIDSVAALVPRAEIEGEMGDTHVGLQARLMSQALRKLSGTIS 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++K I +FINQ+R K+GVMFG+PETT GG ALKFY+++RL+IRR   IK+  +I GN+ R
Sbjct: 183 KTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATIRLEIRRAEQIKNGTNIIGNRVR 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           +KVVKNK+A PFK+ E DIMYG+GIS  GEL+D+ V   I+DKSG+W+S+  +R+GQGRE
Sbjct: 243 IKVVKNKVAPPFKRAEVDIMYGKGISQSGELVDMAVDKDIIDKSGSWYSYGEERIGQGRE 302

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           N+K +L E+ ++ + +E  +R   G+  D+       ++ +D
Sbjct: 303 NAKGYLEEHQDMYKEVERKVRDAYGIPDDADTGNSTKDSSND 344


>gi|585798|sp|Q07447|RECA_PSEPU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|294375|gb|AAC36872.1| recA protein [Pseudomonas putida]
 gi|1617593|gb|AAB16921.1| RecA [Pseudomonas putida]
 gi|740001|prf||2004287A recA gene
          Length = 355

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 209/325 (64%), Positives = 265/325 (81%), Gaps = 2/325 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKRALAAALGQIERQFGKGAVMRMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAEAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK++ PF+Q EF I+YG+GI   GE+IDLGV   +V+KSGAW++++G ++GQG+
Sbjct: 242 RVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYAYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
            N+  +L EN  I   IE  +R   
Sbjct: 302 ANAAKYLAENPAIGAEIEKQIRDKL 326


>gi|322436437|ref|YP_004218649.1| recA protein [Acidobacterium sp. MP5ACTX9]
 gi|321164164|gb|ADW69869.1| recA protein [Acidobacterium sp. MP5ACTX9]
          Length = 357

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 204/346 (58%), Positives = 281/346 (81%), Gaps = 1/346 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KA+EAA+SQ+++ +GKG+IM+LGS+ +I   I V+S+GS+  D ALG+GG P+GR+V
Sbjct: 4   ERGKAIEAAMSQLEKQFGKGSIMRLGSKEAIV-PIAVISTGSISFDAALGVGGVPRGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTT+ L  IA++QK GG  AFVDAEHALD  YA+KLGVD+ NLL+SQPD G
Sbjct: 63  EIFGPESSGKTTITLQIIAEAQKAGGLAAFVDAEHALDPGYAKKLGVDIDNLLVSQPDYG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LV+SGA+D++V+DSVAAL P+AE++G+MG+S  G+QARLMSQALRKLT ++
Sbjct: 123 EQALEIVEALVKSGAIDVLVVDSVAALVPKAELDGEMGDSHMGLQARLMSQALRKLTGTV 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S+  L+FINQ+R KIGVMFG+PETTTGG ALKFYSS+R+DIRR+G++K+ D + G++T
Sbjct: 183 SKSRTCLIFINQIRDKIGVMFGNPETTTGGKALKFYSSMRIDIRRIGAVKEGDVVVGSRT 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VK+VKNK+A+PF+  EFDI+YGEGIS  G+ +DL V  +IVDKSGAW+SF+G+R+GQGR
Sbjct: 243 KVKIVKNKVAAPFRDAEFDILYGEGISREGDTLDLAVLHNIVDKSGAWYSFQGERIGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           EN + FL+ N ++   I+  LR+  G+ A S+        +D  ++
Sbjct: 303 ENVRNFLKTNRDVFGRIDGELRKKLGIGASSVPIPIPEMDEDGVEQ 348


>gi|257866314|ref|ZP_05645967.1| recombinase A [Enterococcus casseliflavus EC30]
 gi|257873170|ref|ZP_05652823.1| recombinase A [Enterococcus casseliflavus EC10]
 gi|257875933|ref|ZP_05655586.1| recombinase A [Enterococcus casseliflavus EC20]
 gi|225936920|emb|CAJ82777.1| recA recombinase [Enterococcus casseliflavus]
 gi|257800272|gb|EEV29300.1| recombinase A [Enterococcus casseliflavus EC30]
 gi|257807334|gb|EEV36156.1| recombinase A [Enterococcus casseliflavus EC10]
 gi|257810099|gb|EEV38919.1| recombinase A [Enterococcus casseliflavus EC20]
          Length = 347

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 202/346 (58%), Positives = 269/346 (77%), Gaps = 2/346 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ YGKGAIM+LG +  + + I  + SGSL LD+ALG+GG+P+GRIV
Sbjct: 4   DRKAALDAALKKIEKNYGKGAIMKLGEK--VDQQISTIPSGSLALDVALGVGGYPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++ +LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+VIDSVAAL PRAEI+G+MG++  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVIDSVAALVPRAEIDGEMGDTHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+G+MFG+PETT GG ALKFYS++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEQLKSGTDIIGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E D+MYG+GIS  GEL+D+ V+  IVDKSGAW+++KG R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEVDMMYGQGISQEGELLDMAVEQDIVDKSGAWYAYKGDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           EN+K ++RE+ E+   + + +R   G+     +       +   D 
Sbjct: 302 ENAKNYMREHQEMMLEVSARVRDAYGIGTGETVTLEEAQEELPLDD 347


>gi|116494430|ref|YP_806164.1| RecA/RadA recombinase [Lactobacillus casei ATCC 334]
 gi|116104580|gb|ABJ69722.1| RecA protein [Lactobacillus casei ATCC 334]
          Length = 353

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 197/349 (56%), Positives = 271/349 (77%), Gaps = 3/349 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   ++ KAL+ AL +I++ +GKGAIM++G++      + VVSSGSL +D ALG+GGFP+
Sbjct: 1   MAGDERQKALDVALKKIEKNFGKGAIMRMGAKADTR--VSVVSSGSLAVDDALGVGGFPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGV++  LL+SQ
Sbjct: 59  GRIVEIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQ LEI D LV SGA+DI+VIDSVAAL PRAEIEGDMG++  G+QARLMSQALRKL
Sbjct: 119 PDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + SI+++K I +FINQ+R K+G++FGSPETT GG ALKFY++VRL+IRR   IK    + 
Sbjct: 179 SGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+T++KVVKNK+A PF+    DIMYG+GIS  GEL+D+ V+  IV+K+G+W++++G+R+
Sbjct: 239 GNRTKIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKAGSWYAYQGERI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           GQGREN+K +L  + ++ + I+  +R   G+ A +   E A  ++D  +
Sbjct: 299 GQGRENAKTYLDNHADLQQTIKQQVRVAYGM-ASAPCPETASVSEDQPE 346


>gi|47678156|emb|CAF21841.1| RecA recombinase [Tetragenococcus solitarius]
          Length = 346

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 199/341 (58%), Positives = 264/341 (77%), Gaps = 2/341 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+ AL +I++ +GKGAIM+LG +    + I  + SGSL LD+ALG+GG+P+GRIV
Sbjct: 4   DRKAALDTALKKIEKNFGKGAIMKLGEKAD--QRISTIPSGSLALDVALGVGGYPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH +A+ QK GGT AF+DAE+ALD  YA  LGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAVAEVQKQGGTAAFIDAENALDPQYAEHLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+V+DSVAAL PRAEI+G+MG++  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGDAHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+GVMFGSPETT GG ALKFYS+VRL++RR   +K    I GN+T
Sbjct: 182 NKTKTIALFINQIREKVGVMFGSPETTPGGRALKFYSTVRLEVRRAEQLKSGTDIIGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYGEGIS  GEL+D+ V+  I++KSGAW+S+K +R+GQGR
Sbjct: 242 KLKVVKNKVAPPFKIAEVDIMYGEGISQVGELLDMAVEKDIINKSGAWYSYKEERIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           EN+K +++E  E+   I +L+R   G+  +   +      +
Sbjct: 302 ENAKKYMKERPEMVAEISTLVRTAFGIGVEDGSETEEGQEE 342


>gi|297614553|gb|ADI48584.1| putative RecA recombinase [uncultured bacterium fss6]
          Length = 355

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 223/325 (68%), Positives = 272/325 (83%), Gaps = 2/325 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+AAL QI+R +GKG+IM+LG   ++   IE VS+GSL LDIALGIGG P GR+V
Sbjct: 4   DKQKALDAALGQIERQFGKGSIMRLGDNQAM--DIESVSTGSLTLDIALGIGGLPFGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD +YA KLGV++  LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDAEHALDPVYAEKLGVNVDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGAVD++V+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I
Sbjct: 122 EQALEICDMLVRSGAVDVVVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  + +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR G++K+ D + GN+T
Sbjct: 182 KKSNSMCIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGAVKEGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF IMYG GIS  GELIDLGVK  I+DK+GAW+S+KG ++GQG+
Sbjct: 242 RVKVVKNKVAPPFKQAEFQIMYGAGISKEGELIDLGVKQKIIDKAGAWYSYKGDKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
            N+  F+ +N  +A +IE  +R+  
Sbjct: 302 ANAMKFMIDNPAVAADIELQIREQL 326


>gi|227503439|ref|ZP_03933488.1| recombination protein RecA [Corynebacterium accolens ATCC 49725]
 gi|227075942|gb|EEI13905.1| recombination protein RecA [Corynebacterium accolens ATCC 49725]
          Length = 378

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 215/371 (57%), Positives = 279/371 (75%), Gaps = 11/371 (2%)

Query: 1   MDYRKEMNIV-----DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGL 55
           M  +K+ +       D+ KAL+AA++ I++ YGKGA+M+LG        I+ +SSG+  +
Sbjct: 1   MATKKKSSSAATKGDDRQKALDAAMAMIEKDYGKGAVMRLGDDDR--PPIKAISSGNTAI 58

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALGIGGFP+GRIVEIYGPESSGKTT+ALH IA +QK GG  AF+DAEHALD  YAR L
Sbjct: 59  DVALGIGGFPRGRIVEIYGPESSGKTTVALHAIASAQKDGGIAAFIDAEHALDPQYARLL 118

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD  NLL+SQPDTGEQALEI DMLVRSGA+DIIV+DSVAALTP+AEIEG+MG+S  G+Q
Sbjct: 119 GVDTDNLLVSQPDTGEQALEIADMLVRSGAIDIIVVDSVAALTPKAEIEGEMGDSHVGLQ 178

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           ARLMSQALRK+T ++  S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVR DIRR
Sbjct: 179 ARLMSQALRKMTGALYNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRCDIRR 238

Query: 236 VGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           + ++KD     GN+T++KVVKNK++ PFK  EFDIMYGEGIS    +IDLGV+   + KS
Sbjct: 239 IQTLKDGQDAIGNRTKLKVVKNKVSPPFKIAEFDIMYGEGISRESSIIDLGVENGFIRKS 298

Query: 296 GAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA----INTK 351
           G+WF+++G +LGQG+E ++ FL++N ++A  IE  + Q  G+  ++   E A    +   
Sbjct: 299 GSWFTYEGDQLGQGKEKARSFLKDNSDLANEIEKKIFQKLGIGEEAANAEEATAMDVPGS 358

Query: 352 DDADKDDTDNV 362
           DD   D++ ++
Sbjct: 359 DDPLTDESVDL 369


>gi|296803022|gb|ADH51587.1| DNA recombinase [Burkholderia contaminans]
          Length = 316

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 219/315 (69%), Positives = 272/315 (86%), Gaps = 1/315 (0%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           + +GKG+IM++G  G   E I+ VS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL 
Sbjct: 1   KQFGKGSIMRMGD-GEATENIQFVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLT 59

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG
Sbjct: 60  LQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSG 119

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           ++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+R
Sbjct: 120 SIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIR 179

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF+
Sbjct: 180 MKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFR 239

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           +  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA
Sbjct: 240 EAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIA 299

Query: 325 ENIESLLRQNAGLVA 339
             IE+ +R++ G+V 
Sbjct: 300 REIENRIRESLGVVT 314


>gi|325567602|ref|ZP_08144269.1| recombination protein A [Enterococcus casseliflavus ATCC 12755]
 gi|325159035|gb|EGC71181.1| recombination protein A [Enterococcus casseliflavus ATCC 12755]
          Length = 355

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 202/346 (58%), Positives = 269/346 (77%), Gaps = 2/346 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ YGKGAIM+LG +  + + I  + SGSL LD+ALG+GG+P+GRIV
Sbjct: 12  DRKAALDAALKKIEKNYGKGAIMKLGEK--VDQQISTIPSGSLALDVALGVGGYPRGRIV 69

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++ +LL+SQPDTG
Sbjct: 70  EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDDLLLSQPDTG 129

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+VIDSVAAL PRAEI+G+MG++  G+QARLMSQALRKL+ SI
Sbjct: 130 EQGLEIADALVSSGAVDIVVIDSVAALVPRAEIDGEMGDTHVGLQARLMSQALRKLSGSI 189

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+G+MFG+PETT GG ALKFYS++RL++RR   +K    I GN+T
Sbjct: 190 NKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEQLKSGTDIIGNRT 249

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E D+MYG GIS  GEL+D+ V+  IVDKSGAW+++KG R+GQGR
Sbjct: 250 KIKVVKNKVAPPFKVAEVDMMYGLGISQEGELLDMAVEQDIVDKSGAWYAYKGDRIGQGR 309

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           EN+K ++RE+ E+   + + +R   G+     +       +   D+
Sbjct: 310 ENAKNYMREHQEMMLEVSARVRDAYGIGTGETVTLEEAQEELPLDE 355


>gi|71737127|ref|YP_275943.1| recombinase A [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|257487044|ref|ZP_05641085.1| recombinase A [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289625999|ref|ZP_06458953.1| recombinase A [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289651485|ref|ZP_06482828.1| recombinase A [Pseudomonas syringae pv. aesculi str. 2250]
 gi|123747565|sp|Q48F94|RECA_PSE14 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|71557680|gb|AAZ36891.1| recA protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320329643|gb|EFW85632.1| recombinase A [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330868577|gb|EGH03286.1| recombinase A [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330878036|gb|EGH12185.1| recombinase A [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330894630|gb|EGH27291.1| recombinase A [Pseudomonas syringae pv. mori str. 301020]
 gi|330985145|gb|EGH83248.1| recombinase A [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331009316|gb|EGH89372.1| recombinase A [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 354

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 213/325 (65%), Positives = 265/325 (81%), Gaps = 2/325 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE++DL V    V+KSGAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYLNGEIVDLAVLHGFVEKSGAWYSYQGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
            NS  FL +N EI + +E  +R   
Sbjct: 302 ANSAKFLADNPEICKALEKQIRDKL 326


>gi|229822966|ref|ZP_04449036.1| hypothetical protein GCWU000282_00258 [Catonella morbi ATCC 51271]
 gi|229787779|gb|EEP23893.1| hypothetical protein GCWU000282_00258 [Catonella morbi ATCC 51271]
          Length = 348

 Score =  363 bits (931), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 190/344 (55%), Positives = 257/344 (74%), Gaps = 7/344 (2%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+ KAL+ AL  I++ +GKG+IM+LG +  +   I  + SGSL LDIALG+GG+P+GR
Sbjct: 2   NEDRKKALDKALKDIEKSFGKGSIMRLGEK--VDTKISTIPSGSLALDIALGVGGYPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E YGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD
Sbjct: 60  IIECYGPESSGKTTVALHAIAEVQKQGGLAAFIDAEHALDPDYAAALGVNIDELLLSQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQ L I D LV SGAVDIIVIDSVAAL PRAEI+G+MG++  G+QARLMSQALRKL+ 
Sbjct: 120 TGEQGLAIADALVTSGAVDIIVIDSVAALVPRAEIDGEMGDAHVGLQARLMSQALRKLSG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +++++K I  FINQ+R K+G+MFG+PETT GG ALKFYS+VRL++R+   IK+   + G+
Sbjct: 180 NVNKTKTICFFINQLREKVGIMFGNPETTPGGRALKFYSTVRLEVRKAELIKNGSDVIGS 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + ++KVVKNK+A PFK+   DI+YG+GIS  GEL+D+     IV+K+G+W+S+   R+GQ
Sbjct: 240 RAKIKVVKNKVAPPFKEALVDIVYGKGISKVGELVDMAADLDIVNKAGSWYSYGEARIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GRE +K +L +N E+   IE+ +R +  +      + P  N +D
Sbjct: 300 GREAAKQYLLDNPEVQAEIEARVRAHYKIG-----EAPETNEED 338


>gi|238854892|ref|ZP_04645222.1| protein RecA [Lactobacillus jensenii 269-3]
 gi|260664179|ref|ZP_05865032.1| recA protein [Lactobacillus jensenii SJ-7A-US]
 gi|282931604|ref|ZP_06337097.1| RecA protein [Lactobacillus jensenii 208-1]
 gi|313472391|ref|ZP_07812883.1| protein RecA [Lactobacillus jensenii 1153]
 gi|238832682|gb|EEQ24989.1| protein RecA [Lactobacillus jensenii 269-3]
 gi|239529747|gb|EEQ68748.1| protein RecA [Lactobacillus jensenii 1153]
 gi|260562065|gb|EEX28034.1| recA protein [Lactobacillus jensenii SJ-7A-US]
 gi|281304215|gb|EFA96324.1| RecA protein [Lactobacillus jensenii 208-1]
          Length = 360

 Score =  363 bits (931), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 189/353 (53%), Positives = 272/353 (77%), Gaps = 3/353 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K  AL+AAL +I++ +GKGA+M++G +  +   I  + +GSL LD A+G+GG+P+
Sbjct: 1   MAKDEKQAALDAALKKIEKNFGKGAVMRMGEK--VDTQISTIPTGSLALDAAIGVGGYPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQ
Sbjct: 59  GRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+G+MG+S  G+QARLMSQALRKL
Sbjct: 119 PNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + +I+++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK    + 
Sbjct: 179 SGNINKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSSDVV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+ V+  IVDK+G+W+S+  +++
Sbjct: 239 GNRVKIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAVEKDIVDKAGSWYSYNDEKI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ-EPAINTKDDADKDD 358
           GQGREN+K +L ++ +I   I + +R+  G+ A SL + E     K+  D+D+
Sbjct: 299 GQGRENAKQYLEDHPDIYSEIMTKVREAYGIDAKSLEEKEDPAKVKEKIDQDE 351


>gi|157326953|gb|ABV44589.1| RecA [Burkholderia cenocepacia]
          Length = 316

 Score =  363 bits (931), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 220/315 (69%), Positives = 274/315 (86%), Gaps = 1/315 (0%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           + +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL 
Sbjct: 1   KQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLT 59

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG
Sbjct: 60  LQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSG 119

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           ++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+R
Sbjct: 120 SIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIR 179

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF+
Sbjct: 180 MKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFR 239

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           +  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA
Sbjct: 240 EAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIA 299

Query: 325 ENIESLLRQNAGLVA 339
             IE+ +R++ G+V+
Sbjct: 300 REIENRIRESLGVVS 314


>gi|225936946|emb|CAJ82770.1| recA recombinase [Enterococcus casseliflavus]
          Length = 347

 Score =  363 bits (931), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 201/341 (58%), Positives = 268/341 (78%), Gaps = 2/341 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ YGKGAIM+LG +  + + I  + SGSL LD+ALG+GG+P+GRIV
Sbjct: 4   DRKAALDAALKKIEKDYGKGAIMKLGEK--VDQQISTIPSGSLALDVALGVGGYPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++ +LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+VIDSVAAL PRAEI+G+MG++  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVIDSVAALVPRAEIDGEMGDTHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+G+MFG+PETT GG ALKFYS++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEQLKSGTDIIGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E D+MYG+GIS  GEL+D+ V+  IVDKSGAW+++KG R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEVDMMYGQGISQEGELLDMAVEQDIVDKSGAWYAYKGDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           EN+K ++RE+ E+   + + +R   G+     +       +
Sbjct: 302 ENAKNYMREHEEMMLEVSARVRDAYGIGTGETVTLEEAQEE 342


>gi|194365254|ref|YP_002027864.1| recombinase A [Stenotrophomonas maltophilia R551-3]
 gi|238693481|sp|B4SRB0|RECA_STRM5 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|194348058|gb|ACF51181.1| recA protein [Stenotrophomonas maltophilia R551-3]
          Length = 345

 Score =  363 bits (931), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 215/327 (65%), Positives = 272/327 (83%), Gaps = 4/327 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI++ +GKG++M++G    + E +E + +GSL LDIALGIGG PKGR+V
Sbjct: 4   NKKRALAAALGQIEKQFGKGSVMRMGD--RVVEPVEAIPTGSLMLDIALGIGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAECQKLGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VDI+V+DSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSGSVDILVVDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  ++VFINQ+RMKIGVM    SPE TTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 182 KRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELID+GV A +V+K+GAW+S+  +R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQVITEILYGEGISREGELIDMGVDAKLVEKAGAWYSYGEERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNA 335
           G++N++ +LR+N  +A  +E+ LR+  
Sbjct: 302 GKDNARGYLRDNPTVAAKLEAELREKF 328


>gi|296803090|gb|ADH51621.1| DNA recombinase [Burkholderia contaminans]
          Length = 314

 Score =  363 bits (931), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 220/315 (69%), Positives = 272/315 (86%), Gaps = 1/315 (0%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           + +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL 
Sbjct: 1   KQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLT 59

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG
Sbjct: 60  LQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSG 119

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           ++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+R
Sbjct: 120 SIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIR 179

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF+
Sbjct: 180 MKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFR 239

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           +  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA
Sbjct: 240 EAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIA 299

Query: 325 ENIESLLRQNAGLVA 339
             IE+ +R+  G+V 
Sbjct: 300 REIENRIRELLGVVT 314


>gi|254524001|ref|ZP_05136056.1| protein RecA [Stenotrophomonas sp. SKA14]
 gi|219721592|gb|EED40117.1| protein RecA [Stenotrophomonas sp. SKA14]
          Length = 366

 Score =  363 bits (931), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 216/327 (66%), Positives = 274/327 (83%), Gaps = 4/327 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI++ +GKG++M++G    + E +E + +GSL LDIALGIGG PKGR+V
Sbjct: 25  NKKRALAAALGQIEKQFGKGSVMRMGD--RVVEPVEAIPTGSLMLDIALGIGGLPKGRVV 82

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 83  EIYGPESSGKTTLTLQAIAECQKLGGTAAFIDAEHALDPIYAGKLGVNVDDLLLSQPDTG 142

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VDI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 143 EQALEIADMLVRSGSVDILVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 202

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  +++FINQ+RMKIGVM    SPETTTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 203 KRSNTLVIFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 262

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELID+GV+A +V+K+GAW+S+  +R+GQ
Sbjct: 263 QTKIKVVKNKLAPPFKQVITEILYGEGISREGELIDMGVEAKLVEKAGAWYSYGEERIGQ 322

Query: 309 GRENSKIFLRENIEIAENIESLLRQNA 335
           G++N++ +LR+N  +A  +E+ LR+  
Sbjct: 323 GKDNARGYLRDNPTVAAKLEAELREKF 349


>gi|47678142|emb|CAF21834.1| RecA recombinase [Enterococcus malodoratus]
          Length = 349

 Score =  363 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 197/325 (60%), Positives = 259/325 (79%), Gaps = 2/325 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AA+ +I++ YGKG+IM+LG +  + + I  + SGSL LD+ALG+GG+P+GRI+
Sbjct: 4   DRKAALDAAMKKIEKNYGKGSIMKLGEK--VDQQISTIPSGSLALDVALGVGGYPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA++LGV++  LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKHGGTAAFIDAEHALDPQYAQRLGVNIDELLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDIIVIDSVAAL PRAEI+G+MG++  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIIVIDSVAALVPRAEIDGEMGDAHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I VFINQ+R K+GVMFG+PE T GG ALKFY++VRL++RR   +K+   I GN+T
Sbjct: 182 NKTKTIAVFINQIREKVGVMFGNPEVTPGGRALKFYATVRLEVRRAEQLKNGTDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG GIS  GEL+D+ V+  IVDKSGAW+ +K  R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGFGISQEGELLDMAVEKDIVDKSGAWYGYKEDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
           EN+K +L ++ E+   + + +R   
Sbjct: 302 ENAKKYLADHPEMMAEVATRVRAAY 326


>gi|71275910|ref|ZP_00652193.1| RecA bacterial DNA recombination protein [Xylella fastidiosa Dixon]
 gi|71899252|ref|ZP_00681414.1| RecA bacterial DNA recombination protein [Xylella fastidiosa Ann-1]
 gi|71163287|gb|EAO13006.1| RecA bacterial DNA recombination protein [Xylella fastidiosa Dixon]
 gi|71730985|gb|EAO33054.1| RecA bacterial DNA recombination protein [Xylella fastidiosa Ann-1]
          Length = 347

 Score =  363 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 219/353 (62%), Positives = 286/353 (81%), Gaps = 13/353 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL  ALSQI++ +GKG++M++G    + E +E + +GSL LD+ALGIGG PKGR+V
Sbjct: 4   NKKRALSVALSQIEKQFGKGSVMRMGD--RVIEAVEAIPTGSLMLDLALGIGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAQCQKKGGTAAFIDAEHALDPIYAGKLGVNVDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG++DI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSGSIDIMVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  +++FINQ+RMKIG+M    SPETTTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 182 KRSNTLVIFINQLRMKIGIMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELI++GV+A +V+K+GAW+S+ G+R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIEMGVEAKLVEKAGAWYSYGGERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           G++N++ +LREN  +A  +E+ LR+           EP   ++++ D+D  ++
Sbjct: 302 GKDNARGYLRENPHLAAKLEADLREKF---------EPTELSREEGDEDALED 345


>gi|289423909|ref|ZP_06425702.1| RecA protein [Peptostreptococcus anaerobius 653-L]
 gi|289155686|gb|EFD04358.1| RecA protein [Peptostreptococcus anaerobius 653-L]
          Length = 351

 Score =  363 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 213/335 (63%), Positives = 274/335 (81%), Gaps = 4/335 (1%)

Query: 9   IVDKSK--ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
            +DK+K  AL  AL +I++ +GKG+IM+LG   S+   I+ + +GS+GLD+ALG+GG P+
Sbjct: 2   TIDKNKMDALNEALGKIEKEHGKGSIMKLGETSSL--EIDSIPTGSIGLDVALGVGGLPR 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E+YGPESSGKTT+ALH IA++QK  G  AF+DAEHALD +YAR LGVD+ NL+ISQ
Sbjct: 60  GRIIEVYGPESSGKTTVALHCIAEAQKRDGIAAFIDAEHALDPVYARALGVDIDNLVISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQAL+I + L+RSGAVDI+VIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL
Sbjct: 120 PDTGEQALDIAESLIRSGAVDILVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T SI +S C+++FINQ+R K+GVMFG+PETTTGG ALKF+SSVRL++RR+ +IK  D + 
Sbjct: 180 TGSIKKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFFSSVRLEVRRIETIKQGDKMI 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G++TRVKVVKNK+A PFKQVEFDIMYG GIS  G+L+++     +V KSGAW+S+K  ++
Sbjct: 240 GSRTRVKVVKNKVAPPFKQVEFDIMYGTGISKMGDLLEVATGIDVVKKSGAWYSYKDSKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           GQGRENSK FL EN +IA  IE+ +R+  GL  DS
Sbjct: 300 GQGRENSKAFLEENEDIANEIEAKVREYYGLDFDS 334


>gi|170729337|ref|YP_001774770.1| recombinase A [Xylella fastidiosa M12]
 gi|238687900|sp|B0U1K8|RECA_XYLFM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|167964130|gb|ACA11140.1| recombination protein RecA [Xylella fastidiosa M12]
          Length = 347

 Score =  363 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 219/353 (62%), Positives = 286/353 (81%), Gaps = 13/353 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL  ALSQI++ +GKG++M++G    + E +E + +GSL LD+ALGIGG PKGR+V
Sbjct: 4   NKKRALSVALSQIEKQFGKGSVMRMGD--RVIEAVEAIPTGSLMLDLALGIGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAQCQKKGGTAAFIDAEHALDPIYAGKLGVNVDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG++DI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSGSIDIMVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  +++FINQ+RMKIG+M    SPETTTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 182 KRSNTLVIFINQLRMKIGIMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELI++GV+A +V+K+GAW+S+ G+R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIEMGVEAKLVEKAGAWYSYGGERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           G++N++ +LREN  +A  +E+ LR+           EP   ++++ D+D  ++
Sbjct: 302 GKDNARGYLRENPHLAAKLEADLREKF---------EPTELSREEGDEDTLED 345


>gi|16332317|ref|NP_443045.1| recombinase A [Synechocystis sp. PCC 6803]
 gi|2500096|sp|P74737|RECA_SYNY3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|1653947|dbj|BAA18857.1| RecA gene product [Synechocystis sp. PCC 6803]
          Length = 354

 Score =  363 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 199/352 (56%), Positives = 260/352 (73%), Gaps = 4/352 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           NI D+ KAL AAL+QI+R +GKGAIM+LG    +   +E +S+G+L LD+ALG GG PKG
Sbjct: 5   NISDREKALNAALAQIERSFGKGAIMRLGDATQMR--VETISTGALTLDLALG-GGLPKG 61

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTLALH +A +Q+ GG  AFVDAEHALD +Y++ LGVD+ NLL++QP
Sbjct: 62  RIVEIYGPESSGKTTLALHAVAATQQAGGVAAFVDAEHALDPVYSKALGVDIDNLLVAQP 121

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GE ALEI D LVRS AVDIIV+DSVAAL PRAEIEG+MG++  G QARLMS+A+RK+ 
Sbjct: 122 DNGESALEIVDQLVRSTAVDIIVVDSVAALVPRAEIEGEMGDTSVGSQARLMSKAMRKIA 181

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-IT 246
            +I RS C+++F+NQ+R KIGV +GSPE TTGGNALKFY+SVRLDIRR+ ++K       
Sbjct: 182 GNIGRSGCLVIFLNQLRQKIGVTYGSPEVTTGGNALKFYASVRLDIRRIQTLKKGTEGEY 241

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G + +VKV KNK+A PF+  EFDI++G+GIS  G  IDL  K  ++ + GAW+S+ G+ +
Sbjct: 242 GIRAKVKVAKNKVAPPFRIAEFDIIFGQGISRMGCTIDLAEKCEVITRKGAWYSYNGENI 301

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            QGR+N+  +L EN EIA  I+  +R+   LV      E     ++  +  D
Sbjct: 302 AQGRDNAMKYLEENPEIAATIDQQVREKLSLVNAVFPVETEDGAEEQGEDGD 353


>gi|315650050|ref|ZP_07903129.1| recombination protein A [Eubacterium saburreum DSM 3986]
 gi|315487679|gb|EFU77983.1| recombination protein A [Eubacterium saburreum DSM 3986]
          Length = 393

 Score =  363 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 207/357 (57%), Positives = 280/357 (78%), Gaps = 1/357 (0%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           ++     ++  ALE+AL+QI++ YGKG++M+LG  G++   +E + +GSLGLDIALG+GG
Sbjct: 18  KQVTEQGERQVALESALTQIEKAYGKGSVMKLGD-GNLHMNVETIPTGSLGLDIALGVGG 76

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            PKGRI+E+YGPESSGKTT+ALH +A++QK GG  AF+DAEHALD  YA K+GV++  L 
Sbjct: 77  IPKGRIIEVYGPESSGKTTVALHMVAEAQKLGGIAAFIDAEHALDPAYAEKIGVNINELY 136

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPD GEQALEIT+ +VRSGA+DII++DSVAAL P+ EIEGDMG+S  G+QARLMSQ L
Sbjct: 137 VSQPDNGEQALEITETMVRSGAIDIIIVDSVAALVPKGEIEGDMGDSHMGLQARLMSQGL 196

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT  +S+S CI++FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+R+V  IK   
Sbjct: 197 RKLTGIVSKSNCIVIFINQLRDKIGVMFGSPETTTGGRALKFYASVRLDVRKVEQIKQGG 256

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            +TG +TR+KVVKNK+A PFK+ EFDIMYG GIS  GE++DLGV   +++K GAW+S+ G
Sbjct: 257 ELTGTKTRIKVVKNKVAPPFKEAEFDIMYGLGISKAGEILDLGVACDVIEKGGAWYSYDG 316

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
            ++GQGREN+K FL +N EI + +E+ +R+   L +++  +    +  D A+ ++ D
Sbjct: 317 NKIGQGRENAKKFLLDNPEIYQKLEAQIREKFKLASENGEKLIEYDPIDGAEDEEFD 373


>gi|313891948|ref|ZP_07825549.1| RecA protein [Dialister microaerophilus UPII 345-E]
 gi|329121010|ref|ZP_08249641.1| recombination protein A [Dialister micraerophilus DSM 19965]
 gi|313119591|gb|EFR42782.1| RecA protein [Dialister microaerophilus UPII 345-E]
 gi|327471172|gb|EGF16626.1| recombination protein A [Dialister micraerophilus DSM 19965]
          Length = 351

 Score =  363 bits (930), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 204/349 (58%), Positives = 267/349 (76%), Gaps = 1/349 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K     +K+KALE+AL+QI + +G GAIM+LG        IEV+S+GSL +DIA+G+GG+
Sbjct: 3   KNAIEQEKNKALESALNQITKEFGAGAIMRLGDMRGKL-DIEVISTGSLAIDIAVGVGGY 61

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GR+ EIYGPESSGKTTLALH IA++QK GG  AF+DAEHALD IYA  LGV+   LLI
Sbjct: 62  PRGRVTEIYGPESSGKTTLALHAIAEAQKIGGVAAFIDAEHALDPIYAHHLGVNTDALLI 121

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQAL I + LVRSGAVDIIV+DSVAAL PR EIEGD+ +   G+QARLMS+A+R
Sbjct: 122 SQPDCGEQALSICESLVRSGAVDIIVVDSVAALVPRQEIEGDISDQSVGLQARLMSKAMR 181

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           +LT  IS+S+ I++FINQ+R K+G++FG+PETTTGG ALKFYSSVR+++RR  +IK+   
Sbjct: 182 RLTGIISKSRTIVIFINQIREKVGIVFGNPETTTGGRALKFYSSVRIEVRRGEAIKNGTD 241

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + GN+TR KVVKNK+A PFK  EFD+MYGEGIS  G L+D+ V   I+ KSGAW+S+KG+
Sbjct: 242 VVGNRTRAKVVKNKVAPPFKVAEFDVMYGEGISREGTLLDIAVNMDIIKKSGAWYSYKGE 301

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           R+ QGREN+K +L +N EIA+ I+ ++R    +  ++   E      D+
Sbjct: 302 RISQGRENAKKYLHDNTEIAKEIDKIIRDTLMVEPETFNDEVIAGNDDE 350


>gi|255033821|ref|YP_003084442.1| recA protein [Dyadobacter fermentans DSM 18053]
 gi|254946577|gb|ACT91277.1| recA protein [Dyadobacter fermentans DSM 18053]
          Length = 355

 Score =  363 bits (930), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 216/348 (62%), Positives = 267/348 (76%), Gaps = 3/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+  L ++ + YGKG +M+L     +   I V+S+GSLGLD+ALG+GG P+GRIV
Sbjct: 10  NKLKALQTTLEKLDKTYGKGTVMRLSDTKVL--DIPVISTGSLGLDLALGVGGVPRGRIV 67

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL++H IA++QK GG  AF+DAEHA D  YA KLG+D  NLLISQPD+G
Sbjct: 68  EIYGPESSGKTTLSMHCIAEAQKKGGLAAFIDAEHAFDRTYAEKLGIDTSNLLISQPDSG 127

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L+ SGAVDIIVIDSVAAL PRAE+EG+MGES  G+QARLMSQALRKLT  I
Sbjct: 128 EQALEIAEHLISSGAVDIIVIDSVAALVPRAELEGEMGESKMGLQARLMSQALRKLTGVI 187

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT-GNQ 249
           +++ C  +FINQ+R KIGVMFG+PETTTGGNALK+Y+SVRLDIRRVG IK+      GN+
Sbjct: 188 NKTGCCCIFINQLREKIGVMFGNPETTTGGNALKYYASVRLDIRRVGQIKESADAILGNR 247

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFK VEFDIMYGEG+S  GE+IDL V+  IV KSG+WFS++G RLGQG
Sbjct: 248 TRVKVVKNKVAPPFKVVEFDIMYGEGVSKVGEIIDLAVELEIVKKSGSWFSYEGNRLGQG 307

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           R+  K  +++N E+ E +E  +R       DSL+     N  DD   +
Sbjct: 308 RDAVKALIKDNPELMEELEGKIRGLVNNDPDSLIDTSEPNVADDGSPE 355


>gi|89143137|emb|CAJ41870.1| recombinase A [Pseudochrobactrum asaccharolyticum]
          Length = 302

 Score =  363 bits (930), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 237/303 (78%), Positives = 277/303 (91%), Gaps = 1/303 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL+AALSQI+R +GKG+IM+LG    + E IE V +GSL LDIALG+GG PKGRIVEIY
Sbjct: 1   KALDAALSQIERSFGKGSIMRLGQNDKVVE-IETVPTGSLSLDIALGVGGLPKGRIVEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTT+ALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQA
Sbjct: 60  GPESSGKTTMALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 LEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 179

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
             +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQTRVK
Sbjct: 180 NTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQTRVK 239

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VVKNK+A PFKQVEFDIMYG+G+S  GEL+DLGVKA IV+KSG+WFS+  QRLGQGR+N+
Sbjct: 240 VVKNKLAPPFKQVEFDIMYGQGVSKTGELVDLGVKAGIVEKSGSWFSYNSQRLGQGRDNA 299

Query: 314 KIF 316
           K F
Sbjct: 300 KNF 302


>gi|68536193|ref|YP_250898.1| recombinase A [Corynebacterium jeikeium K411]
 gi|76363324|sp|Q4JV77|RECA_CORJK RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|68263792|emb|CAI37280.1| recombinase A [Corynebacterium jeikeium K411]
          Length = 375

 Score =  363 bits (930), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 207/349 (59%), Positives = 272/349 (77%), Gaps = 4/349 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+SKALE A++QI++ +GKGAIM+LG        I+ +SSG++ ++ ALGIGGFP+GR+V
Sbjct: 14  DRSKALELAMAQIEKDFGKGAIMRLGDDTR--PPIQAISSGNIAINAALGIGGFPRGRVV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA++Q+ GG  AFVDAEHALD  YAR LGVD   LL+SQPDTG
Sbjct: 72  EIYGPESSGKTTVALHAIAEAQRAGGIAAFVDAEHALDPEYARALGVDTDALLVSQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML+RSGA+DIIV+DSVAALTP+AEI+GDMG+S  G+QARLMSQALRK+T ++
Sbjct: 132 EQALEIADMLIRSGAIDIIVVDSVAALTPKAEIDGDMGDSHVGLQARLMSQALRKMTGAL 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR DIRR+ ++KD   + GN+T
Sbjct: 192 YQTGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRIQALKDGQDVVGNRT 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK++ PFK  EFDI+YGEGIS  G +IDLGV+  ++ KSG+WF++ G +LGQG+
Sbjct: 252 RLKVVKNKVSPPFKIAEFDILYGEGISREGSIIDLGVETGLIKKSGSWFTYDGDQLGQGK 311

Query: 311 ENSKIFLRENIEIAENIESLL-RQ-NAGLVADSLLQEPAINTKDDADKD 357
           E ++ FL+ N +++  +E  + R+   G  A    ++      D  D+D
Sbjct: 312 EKAREFLKNNRDLSAELEDRIARELKIGPYAKMKDEQTEEAAGDQMDED 360


>gi|70904919|gb|AAZ14037.1| RecA [Burkholderia ambifaria]
          Length = 314

 Score =  363 bits (930), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 219/314 (69%), Positives = 273/314 (86%), Gaps = 1/314 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L
Sbjct: 1   QFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTL 59

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             +A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+
Sbjct: 60  QVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGS 119

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RM
Sbjct: 120 IDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRM 179

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++
Sbjct: 180 KIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRE 239

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
             FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA 
Sbjct: 240 AIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAR 299

Query: 326 NIESLLRQNAGLVA 339
            IE+ +R++ G+V 
Sbjct: 300 EIENRIRESLGVVT 313


>gi|51892803|ref|YP_075494.1| multifunctional protein involved in homologous recombination
           [Symbiobacterium thermophilum IAM 14863]
 gi|59798214|sp|Q67NU3|RECA_SYMTH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|51856492|dbj|BAD40650.1| multifunctional protein involved in homologous recombination
           [Symbiobacterium thermophilum IAM 14863]
          Length = 350

 Score =  363 bits (930), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 207/346 (59%), Positives = 277/346 (80%), Gaps = 5/346 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KA++ AL+QI++ +GKG+IM+LG Q S    +EV+ +GS+ LD+ALG+GG P+GRI E
Sbjct: 7   KQKAIDMALAQIEKQFGKGSIMRLGEQMSRLN-VEVIPTGSVALDVALGVGGLPRGRITE 65

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH IA++QK GG  AFVDAEHALD +YA+ LGVD+ NLL+SQPDTGE
Sbjct: 66  IYGPESSGKTTVALHVIAEAQKMGGVAAFVDAEHALDPVYAQALGVDIDNLLVSQPDTGE 125

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEIT+ LVRSGAVD++V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT +IS
Sbjct: 126 QALEITETLVRSGAVDVVVVDSVAALVPKAEIEGEMGDSFVGLQARLMSQALRKLTGAIS 185

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +SK +++FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++R+  ++K    + G++TR
Sbjct: 186 KSKAVVIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRKTETLKSGQEVVGSRTR 245

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS--IVDKSGAWFSFKGQRLGQG 309
           VKVVKNK+A PFKQ EFDI+YG+GIS  G LID+G + +  ++ KSGAW+S+   R+GQG
Sbjct: 246 VKVVKNKVAPPFKQAEFDILYGQGISKEGSLIDIGTELNPPVIVKSGAWYSYGDLRIGQG 305

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           ++N++ +LR++ E+A  IE  +++   +   SL  + A     DAD
Sbjct: 306 KDNARDWLRQHPEVAAEIEQKIKERLNVA--SLPVKYADEEAGDAD 349


>gi|109899564|ref|YP_662819.1| recA protein [Pseudoalteromonas atlantica T6c]
 gi|122971674|sp|Q15QS3|RECA_PSEA6 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|109701845|gb|ABG41765.1| recA protein [Pseudoalteromonas atlantica T6c]
          Length = 343

 Score =  363 bits (930), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 226/342 (66%), Positives = 280/342 (81%), Gaps = 2/342 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K++AL AAL QI++ +GKGAIM+LG   ++   IE +S+GSL +DIALGIGG P GR+V
Sbjct: 4   NKTRALTAALGQIEKQFGKGAIMRLGDNQAM--DIEAISTGSLTIDIALGIGGLPCGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAEAQKMGKTCAFVDAEHALDPIYAGKLGVNIDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGAVD++V+DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT +I
Sbjct: 122 EQALEICDMLVRSGAVDVVVVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD D + GN+T
Sbjct: 182 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF IMYG+GI    ELIDLGVK  +V+K+GAW+S+ G+R+GQG+
Sbjct: 242 RVKVVKNKVAPPFKQAEFQIMYGQGICKEAELIDLGVKQKLVEKAGAWYSYNGERIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
            N   +L+E+ E++ +IE  LR    L      +EPA   ++
Sbjct: 302 ANVVKYLKEHTEMSNDIEQKLRAELLLKKTVKAEEPAKADEE 343


>gi|291542171|emb|CBL15281.1| RecA protein [Ruminococcus bromii L2-63]
          Length = 373

 Score =  363 bits (930), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 210/343 (61%), Positives = 266/343 (77%), Gaps = 2/343 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDK+KALE AL+QI++ +GKGA+M+LG    +   IE +S+GSL LDIALGIGG P+GRI
Sbjct: 3   VDKNKALETALTQIEKQFGKGAVMRLGENKHM--NIEHISTGSLSLDIALGIGGLPRGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTL+LH IA+ QK GG  AF+D EHALD  YA  LGVD+ +LL+SQPDT
Sbjct: 61  VEIYGPESSGKTTLSLHCIAEGQKNGGNVAFIDVEHALDPTYAAALGVDVDSLLVSQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GE ALEI + L+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+ ARLMSQALRKL  +
Sbjct: 121 GEDALEIAEALIRSGAIDVIVIDSVAALVPKAEIEGEMGDSHVGLHARLMSQALRKLAGA 180

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S C+ +FINQ+R K+GV++G+PE TTGG ALKFYSSVR+DIRRV ++K    + G+ 
Sbjct: 181 ISKSNCVAIFINQLREKVGVVYGNPEVTTGGRALKFYSSVRIDIRRVETLKSGGEMVGSH 240

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TR KVVKNK+A PF++ EFDIMYGEGIS  GEL+DL VKA +V K+GAWFS+ G+RLGQG
Sbjct: 241 TRAKVVKNKIAPPFREAEFDIMYGEGISREGELLDLAVKAEVVQKAGAWFSYDGRRLGQG 300

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           R+  K  L+ + E+A  IE  L +N   + +     P +   +
Sbjct: 301 RDKVKELLKTDKELAAEIEKKLWENIDKLYERKKPAPKVKITE 343


>gi|268319835|ref|YP_003293491.1| DNA recombination protein RecA [Lactobacillus johnsonii FI9785]
 gi|262398210|emb|CAX67224.1| bacterial DNA recombination protein RecA [Lactobacillus johnsonii
           FI9785]
          Length = 363

 Score =  363 bits (930), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 193/360 (53%), Positives = 270/360 (75%), Gaps = 7/360 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   DK KAL+ AL +I++ +GKGA+M++G +  +   I  + SGSL LD ALG+GG+P+
Sbjct: 1   MANDDKKKALDIALKKIEKDFGKGAVMRMGEK--VDTQISTIPSGSLALDAALGVGGYPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQ
Sbjct: 59  GRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+GDMG+S  G+QARLMSQALRKL
Sbjct: 119 PNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGDMGDSHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + +IS++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK    + 
Sbjct: 179 SGNISKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQGSDVI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ ++KVVKNK+A PFK  E DIMYG+GIS  GELID+     I+ K+G+W+S+   R+
Sbjct: 239 GNRVKLKVVKNKVAPPFKVAEVDIMYGKGISQTGELIDMAADKDIIKKAGSWYSYGDDRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ-EPAINTKDDAD----KDDTDN 361
           GQGREN+K +L E+ ++ E ++  +R+  G+ A ++ + E     K D +    KD +D 
Sbjct: 299 GQGRENAKQYLEEHPDVYEEVKEKVREAYGIDAKAIEERENPEKVKQDKEVPVNKDASDE 358


>gi|293376433|ref|ZP_06622665.1| protein RecA [Turicibacter sanguinis PC909]
 gi|325845048|ref|ZP_08168364.1| RecA protein [Turicibacter sp. HGF1]
 gi|292644942|gb|EFF63020.1| protein RecA [Turicibacter sanguinis PC909]
 gi|325488924|gb|EGC91317.1| RecA protein [Turicibacter sp. HGF1]
          Length = 345

 Score =  363 bits (930), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 202/332 (60%), Positives = 262/332 (78%), Gaps = 2/332 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++  AL  AL  I++ YGKG++M+LG +      IEVVSSGSL LD ALG+GG+P+GR++
Sbjct: 4   NREAALMQALKSIEKQYGKGSVMKLGEKTDTR--IEVVSSGSLALDSALGVGGYPRGRVI 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT ALH IA+ QK GGT AF+DAEHALD  YA KLGVD   LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTFALHAIAEVQKKGGTAAFIDAEHALDPAYAEKLGVDTDELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL+ +I
Sbjct: 122 EQALEIAEALVRSGAIDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + +K I +FINQ+R K+G+MFG+PE T GG ALKFYS++RL++RR   IK    I GN  
Sbjct: 182 NTTKTIAIFINQIREKVGIMFGNPEVTPGGRALKFYSTIRLEVRRGEQIKLGTDIVGNVA 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK VE D+MYGEG+S  GE++DL V+ +I++KSG+W+S+ G++LGQGR
Sbjct: 242 KIKVVKNKVAPPFKTVEVDVMYGEGVSKQGEILDLAVEYNIIEKSGSWYSYNGEKLGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL 342
           EN+K+FL+EN  + E +  L+R    +  D++
Sbjct: 302 ENAKLFLKENPFVMEEVAELIRAELNIATDTV 333


>gi|320323085|gb|EFW79174.1| recombinase A [Pseudomonas syringae pv. glycinea str. B076]
          Length = 354

 Score =  363 bits (930), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 213/325 (65%), Positives = 265/325 (81%), Gaps = 2/325 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAQAQKIGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EF I+YG+GI   GE++DL V    V+KSGAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYLNGEIVDLAVLHGFVEKSGAWYSYQGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
            NS  FL +N EI + +E  +R   
Sbjct: 302 ANSAKFLADNPEICKALEKQIRDKL 326


>gi|257871248|ref|ZP_05650901.1| recombinase A [Enterococcus gallinarum EG2]
 gi|257805412|gb|EEV34234.1| recombinase A [Enterococcus gallinarum EG2]
          Length = 348

 Score =  363 bits (930), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 206/351 (58%), Positives = 274/351 (78%), Gaps = 6/351 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ YGKGAIM+LG +  + + I  + SGSL LD+ALG+GG+P+GRIV
Sbjct: 4   DRKAALDAALKKIEKNYGKGAIMKLGEK--VDQQISTIPSGSLALDVALGVGGYPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++ +LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKGGGTAAFIDAEHALDPQYAQKLGVNIDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+VIDSVAAL PRAEI+G+MG++  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVIDSVAALVPRAEIDGEMGDTHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+G+MFG+PETT GG ALKFYS++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEQLKSGTDIIGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E D+MYG+GIS  GEL+D+ V+  IVDKSGAW+++KG R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEVDMMYGQGISQEGELLDMAVEQDIVDKSGAWYAYKGDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           EN+K ++RE+ E+   + + +R   G+       E  I T+D  ++   D 
Sbjct: 302 ENAKNYMREHQEMMMEVSARVRDAYGIGT----GETVIETEDAQEELPLDE 348


>gi|329849340|ref|ZP_08264186.1| protein RecA [Asticcacaulis biprosthecum C19]
 gi|328841251|gb|EGF90821.1| protein RecA [Asticcacaulis biprosthecum C19]
          Length = 360

 Score =  363 bits (930), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 238/349 (68%), Positives = 291/349 (83%), Gaps = 1/349 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
            N  +K +ALEAAL+QI R +GKG++M+LG  G I E +E +S+GSLGLDIALGIGG PK
Sbjct: 11  KNESEKQRALEAALAQIDRAFGKGSVMRLGVGGKIAE-VESISTGSLGLDIALGIGGLPK 69

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++EIYGPESSGKTTLALHT+A+ QK GGT AFVDAEHALD  YA KLGV+L+ LL+SQ
Sbjct: 70  GRVIEIYGPESSGKTTLALHTVAEIQKAGGTAAFVDAEHALDPTYAGKLGVNLEELLVSQ 129

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEITD LVRSGAVDI+V+DSVAALTPRAEIEGDMG+SLPG+QARLMSQALRKL
Sbjct: 130 PDNGEQALEITDTLVRSGAVDIVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKL 189

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T SIS+SKCI++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIR +G IK +D I 
Sbjct: 190 TGSISKSKCIVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRSIGKIKVRDEII 249

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN  +VKVVKNK+A PF++VEFDI+YG+GIS  GE+ID+GVKASI++K+G+WFS+   R+
Sbjct: 250 GNNVKVKVVKNKVAPPFREVEFDILYGQGISKLGEIIDMGVKASIIEKAGSWFSYNSTRI 309

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           GQGREN++ FL+ N E+   IE  +R     +++ LL  P  +  D  +
Sbjct: 310 GQGRENARDFLKANPEMTAEIEKAIRNKTDKLSEELLGTPEPDANDGDE 358


>gi|241764843|ref|ZP_04762848.1| recA protein [Acidovorax delafieldii 2AN]
 gi|241365638|gb|EER60362.1| recA protein [Acidovorax delafieldii 2AN]
          Length = 365

 Score =  363 bits (930), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 222/338 (65%), Positives = 281/338 (83%), Gaps = 7/338 (2%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG IM+LG  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 28  QIEKQFGKGTIMRLGE-GEVIEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 86

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGTCAFVDAEHALD  YA+KLGV L +LLISQPDTGEQALEI D LV
Sbjct: 87  TLTLQVIAEMQKQGGTCAFVDAEHALDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLV 146

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD+IV+DSVAALTP+AEIEG+MG++LPG+QARLMSQALRKLT++I ++ C+++FIN
Sbjct: 147 RSGAVDLIVVDSVAALTPKAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFIN 206

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK  D   GN+T+VKVVKNK++ 
Sbjct: 207 QIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSP 266

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PFK  EFDI++GEGIS  GE+ID+GV A +V+K+GAW+++ G+++GQGR+N++ FLREN 
Sbjct: 267 PFKTAEFDILFGEGISREGEIIDMGVNAKVVEKAGAWYAYNGEKIGQGRDNAREFLRENP 326

Query: 322 EIAENIESLLRQNAGLVADSLLQ------EPAINTKDD 353
           ++A  IE+ +R++ G+             +PA   K+D
Sbjct: 327 DLAREIENKVRESLGIALLPAALEAAPTGKPAKGEKED 364


>gi|326794021|ref|YP_004311841.1| protein recA [Marinomonas mediterranea MMB-1]
 gi|326544785|gb|ADZ90005.1| Protein recA [Marinomonas mediterranea MMB-1]
          Length = 348

 Score =  363 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 218/330 (66%), Positives = 269/330 (81%), Gaps = 3/330 (0%)

Query: 7   MNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           M+  D K KAL+AALSQI+R +GKGAIM++G    +   I+ VS+GSLGLDIALG GG P
Sbjct: 1   MSTADNKKKALDAALSQIERQFGKGAIMKMGEGAKL--DIDTVSTGSLGLDIALGAGGLP 58

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
            GRI EIYGPESSGKTTL L  IA++QK G TCAF+DAEHALD  YA KLGV++  LL+S
Sbjct: 59  FGRICEIYGPESSGKTTLTLSVIAEAQKQGKTCAFIDAEHALDPGYAEKLGVNIGELLVS 118

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEI DMLVRS +VD++++DSVAAL P++EIEG+MG+S  G+QARL+SQA+RK
Sbjct: 119 QPDTGEQALEICDMLVRSNSVDVVIVDSVAALVPKSEIEGEMGDSSVGVQARLLSQAMRK 178

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT SI  + C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GS+K  D +
Sbjct: 179 LTGSIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKQGDEV 238

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+TRVKVVKNK+A PFKQ EF IMYG GI   GE+IDLGVK   VDKSGAW+++ G +
Sbjct: 239 IGNETRVKVVKNKIAPPFKQTEFQIMYGRGIYRMGEIIDLGVKQGFVDKSGAWYAYGGSK 298

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNA 335
           +GQG+ N+  +L +N EIA+ IE+ +R+  
Sbjct: 299 IGQGKANAAQYLSDNPEIAQEIETKIREAL 328


>gi|296837457|gb|ADH59587.1| DNA recombinase [Burkholderia contaminans]
          Length = 312

 Score =  363 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 218/313 (69%), Positives = 270/313 (86%), Gaps = 1/313 (0%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           + +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL 
Sbjct: 1   KQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLT 59

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG
Sbjct: 60  LQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSG 119

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           ++D+IVIDSVAAL P+AEIEG+MG+SLPG QAR MSQALRKLT +I R+ C+++FINQ+R
Sbjct: 120 SIDMIVIDSVAALVPKAEIEGEMGDSLPGRQARRMSQALRKLTGTIKRTNCLVIFINQIR 179

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF+
Sbjct: 180 MKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFR 239

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           +  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA
Sbjct: 240 EAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIA 299

Query: 325 ENIESLLRQNAGL 337
             IE+ +R++ G+
Sbjct: 300 REIENRIRESLGV 312


>gi|157326903|gb|ABV44564.1| RecA [Burkholderia cenocepacia]
          Length = 317

 Score =  363 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 219/316 (69%), Positives = 274/316 (86%), Gaps = 1/316 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+YGE IS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI
Sbjct: 240 REAIFDILYGESISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299

Query: 324 AENIESLLRQNAGLVA 339
           A  IE+ +R++ G+V+
Sbjct: 300 AREIENRIRESLGVVS 315


>gi|296837379|gb|ADH59548.1| DNA recombinase [Burkholderia contaminans]
          Length = 312

 Score =  363 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 219/313 (69%), Positives = 272/313 (86%), Gaps = 1/313 (0%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           + +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL 
Sbjct: 1   KQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLT 59

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG
Sbjct: 60  LQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSG 119

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           ++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+R
Sbjct: 120 SIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIR 179

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF+
Sbjct: 180 MKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFR 239

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           +  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA
Sbjct: 240 EAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIA 299

Query: 325 ENIESLLRQNAGL 337
             IE+ +R++ G+
Sbjct: 300 REIENRIRESLGV 312


>gi|190573723|ref|YP_001971568.1| recombinase A [Stenotrophomonas maltophilia K279a]
 gi|229620028|sp|B2FL31|RECA_STRMK RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|190011645|emb|CAQ45264.1| putative recombinase A [Stenotrophomonas maltophilia K279a]
          Length = 345

 Score =  363 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 216/327 (66%), Positives = 273/327 (83%), Gaps = 4/327 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI++ +GKG++M++G    + E +E + +GSL LDIALGIGG PKGR+V
Sbjct: 4   NKKRALAAALGQIEKQFGKGSVMRMGD--RVVEPVEAIPTGSLMLDIALGIGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAECQKMGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VDI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSGSVDILVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  +++FINQ+RMKIGVM    SPETTTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 182 KRSNTLVIFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELID+GV A +V+K+GAW+S+  +R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQVITEILYGEGISREGELIDMGVDAKLVEKAGAWYSYGEERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNA 335
           G++N++ +LR+N  +A  +E+ LR+  
Sbjct: 302 GKDNARGYLRDNPTVAAKLEAELREKF 328


>gi|88705827|ref|ZP_01103536.1| RecA protein [Congregibacter litoralis KT71]
 gi|88699898|gb|EAQ97008.1| RecA protein [Congregibacter litoralis KT71]
          Length = 347

 Score =  362 bits (929), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 214/343 (62%), Positives = 269/343 (78%), Gaps = 2/343 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KALEAALSQI+R +GKG+IM++G + ++   IE VS+GSLGLD+ALGIGG P GRI
Sbjct: 3   ANKGKALEAALSQIERQFGKGSIMKMGDRAAM--DIENVSTGSLGLDVALGIGGLPYGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
            EIYGPESSGKTTL L  IAQ+Q+ G TCAF+DAEHALD  YA KLGV++  L++SQPDT
Sbjct: 61  CEIYGPESSGKTTLTLSVIAQAQRDGKTCAFIDAEHALDPKYAEKLGVNIDELIVSQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML RSGAVD+++IDSVAAL P+AEIEGD+G+S  G+ AR+MSQA+RKLT +
Sbjct: 121 GEQALEICDMLTRSGAVDVVIIDSVAALVPKAEIEGDIGDSHVGLAARMMSQAMRKLTGN 180

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I  +  +++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++K+ D + GN+
Sbjct: 181 IKNNNVLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKEGDEVIGNE 240

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQ EF IMYG GI    E+ID GVK ++V+KSGAW+++ G ++GQG
Sbjct: 241 TRVKVVKNKVAPPFKQAEFQIMYGAGIYRMAEIIDWGVKLNLVEKSGAWYAYNGDKIGQG 300

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           + N+  FL  N ++   IES +R     +A     E      D
Sbjct: 301 KANAAKFLEANPDVTSEIESAIRAETLNIAKPEAPEMDAEETD 343


>gi|145629785|ref|ZP_01785580.1| recombinase A [Haemophilus influenzae 22.1-21]
 gi|145638484|ref|ZP_01794093.1| recombinase A [Haemophilus influenzae PittII]
 gi|144978024|gb|EDJ87808.1| recombinase A [Haemophilus influenzae 22.1-21]
 gi|145272079|gb|EDK11987.1| recombinase A [Haemophilus influenzae PittII]
 gi|309751787|gb|ADO81771.1| DNA recombination protein RecA [Haemophilus influenzae R2866]
          Length = 354

 Score =  362 bits (929), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 222/347 (63%), Positives = 282/347 (81%), Gaps = 2/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSLGLD+ALGIGG P GRIV
Sbjct: 6   EKQKALAAALGQIEKQFGKGSIMKLGDTKTL--DVESISTGSLGLDVALGIGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IAQ+QK G TCAF+DAEHALD IYA KLGVD+K L +SQPD G
Sbjct: 64  EIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAEHALDPIYAAKLGVDVKELFVSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGA+D+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT  I
Sbjct: 124 EQALEICDALVRSGAIDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTGQI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C++VFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR GS+KD ++I GN+T
Sbjct: 184 KNANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKDGENIIGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PF+QV+F I+YGEGIS  GEL++LGVK  +V+KSGAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKLAAPFRQVDFQILYGEGISKAGELLELGVKHKLVEKSGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
            NS  +L ENIE ++ +E+ LR       +  L      ++++ + +
Sbjct: 304 ANSMKWLNENIEKSDELEAHLRAELVANPEQALMADIEQSENNTESE 350


>gi|307694319|ref|ZP_07636556.1| recombinase A [Ruminococcaceae bacterium D16]
          Length = 369

 Score =  362 bits (929), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 209/339 (61%), Positives = 270/339 (79%), Gaps = 7/339 (2%)

Query: 1   MDYRKEM-----NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGL 55
           M  +K +        DK KALE A++QI+R YGKG+IM+LG    +   +E + +GSL L
Sbjct: 1   MATKKPVVESAAPASDKKKALETAMAQIERAYGKGSIMRLGENVDVM--VESIPTGSLSL 58

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALGIGG P+GRI+EIYGPESSGKTTLALH +A++QK GG  AF+DAEHALD  YAR L
Sbjct: 59  DLALGIGGMPRGRIIEIYGPESSGKTTLALHVVAEAQKRGGEVAFIDAEHALDPTYARAL 118

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ ++LI+QPDTGEQ LEI + LVRSGA+D++V+DSVAALTPRAEIEGDMG+S  G+ 
Sbjct: 119 GVDIDSMLIAQPDTGEQGLEICEALVRSGAIDVVVVDSVAALTPRAEIEGDMGDSHVGLL 178

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           ARLMSQALRKL  SI+++ CI++FINQ+R K+GV++G+PE TTGG ALKFYSSVR+D+RR
Sbjct: 179 ARLMSQALRKLAGSIAKTNCIVIFINQLREKVGVVYGNPEVTTGGRALKFYSSVRIDVRR 238

Query: 236 VGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           + ++K    I GN+TR K+VKNK+A PF++ EFDIMYGEGIS  GELIDLGVK  +V KS
Sbjct: 239 IEALKSGSEIIGNRTRAKIVKNKVAPPFREAEFDIMYGEGISKVGELIDLGVKLDLVQKS 298

Query: 296 GAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
           G+WF+    RLGQGR+ +K FLR+N ++A+ +E+ +R N
Sbjct: 299 GSWFAMGELRLGQGRDAAKQFLRDNPDLADELEAKIRAN 337


>gi|222054214|ref|YP_002536576.1| recA protein [Geobacter sp. FRC-32]
 gi|221563503|gb|ACM19475.1| recA protein [Geobacter sp. FRC-32]
          Length = 333

 Score =  362 bits (929), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 210/323 (65%), Positives = 271/323 (83%), Gaps = 1/323 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + ++ KA++ ALSQI++ +GKG+IM+LG        +  + +GSL LDIALG+GG P+GR
Sbjct: 1   MQEREKAIDLALSQIEKQFGKGSIMRLG-NEEALPDVAAIPTGSLSLDIALGVGGVPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTTLALH +A++QKT G  AF+DAEHALD  YARKLGV   +LL+SQPD
Sbjct: 60  IIEIYGPESSGKTTLALHIVAEAQKTEGIAAFIDAEHALDIGYARKLGVKTDDLLVSQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEIT+ LVRSGA+D++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT+
Sbjct: 120 TGEQALEITETLVRSGAIDVLVIDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLTA 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            IS+S C ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIR++ S+K  + + G+
Sbjct: 180 IISKSNCCVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRKIASLKQGNDVIGS 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T+VKVVKNK+A PFK+VEFDI+YGEGIS  G+++DL V+  IVDKSGAWFS+  +R+GQ
Sbjct: 240 RTKVKVVKNKVAPPFKEVEFDILYGEGISREGDILDLAVEKGIVDKSGAWFSYGKERIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLL 331
           GRENS+I+L++N EI   I+  L
Sbjct: 300 GRENSRIYLKQNPEICAEIKEKL 322


>gi|319441560|ref|ZP_07990716.1| recombinase A [Corynebacterium variabile DSM 44702]
          Length = 379

 Score =  362 bits (929), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 205/348 (58%), Positives = 273/348 (78%), Gaps = 5/348 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KAL+ A++QI++ YGKGA+M+LG        I+V+ SG++ +++ALGIGGFP+GRI
Sbjct: 13  ADRQKALDLAMAQIEKDYGKGAVMRLGDDER--PPIQVIPSGNIAINVALGIGGFPRGRI 70

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH IA++QK GG  AF+DAEHALD  YA+KLGVD  NLL+SQPDT
Sbjct: 71  VEIYGPESSGKTTVALHAIAEAQKAGGIAAFIDAEHALDPEYAKKLGVDTDNLLVSQPDT 130

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+ +IV+DSVAALTP+AEIEGDMG+S  G+QARLMSQALRK+T +
Sbjct: 131 GEQALEIADMLVRSGAISVIVVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKMTGA 190

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +S++    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR D+RR+ ++KD     GN+
Sbjct: 191 LSQTGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDVRRIQTLKDGQDAVGNR 250

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           T++K+VKNK++ PFK  EFDI+YGEGIS  G +IDLGV+  +V KSG+W+++KG +LGQG
Sbjct: 251 TKMKIVKNKVSPPFKIAEFDIVYGEGISREGSIIDLGVENGLVKKSGSWYTYKGDQLGQG 310

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           +E ++ FL+E+ E++  IE  + +   +       +     ++DA  D
Sbjct: 311 KEKAREFLKESPELSAEIEDGIMRALKVGP---YAKADATAEEDAPMD 355


>gi|254994656|ref|ZP_05276846.1| recombinase A [Anaplasma marginale str. Mississippi]
 gi|255002761|ref|ZP_05277725.1| recombinase A [Anaplasma marginale str. Puerto Rico]
          Length = 357

 Score =  362 bits (929), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 218/360 (60%), Positives = 284/360 (78%), Gaps = 5/360 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   K+    +K KAL+AA+SQI+R +G+GAIM+L  +    E ++ VS+GS+ LD ALG
Sbjct: 1   MSGSKKDVESEKQKALDAAISQIERAFGRGAIMKL--KQHPAEKMDSVSTGSIALDAALG 58

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG PKGRIVEI+GPESSGKTTLALH IA++QK GG CAF+DAEHALD++YARKLGV++ 
Sbjct: 59  IGGLPKGRIVEIFGPESSGKTTLALHVIAEAQKQGGNCAFIDAEHALDTVYARKLGVNVG 118

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +L++SQPDTGEQAL I + LV SGA+D+IV+DSVAALTPRAEIEGDMG+   G+QARL+S
Sbjct: 119 DLIVSQPDTGEQALHIVEYLVCSGAIDVIVVDSVAALTPRAEIEGDMGDQHMGLQARLLS 178

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
            ALRKLTS +S++ CILVFINQ+R+KIGV++G+PE TTGG+ALKFY+S+RLDIR+V +IK
Sbjct: 179 HALRKLTSVVSKANCILVFINQIRIKIGVIYGNPEVTTGGSALKFYTSIRLDIRKVSAIK 238

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           DKD++ GNQTRVKVVKNK+A PFKQ EFDI+Y EGIS  GE++D+GVK   V+KSGA +S
Sbjct: 239 DKDNVIGNQTRVKVVKNKVAPPFKQAEFDIVYNEGISKLGEIVDMGVKFGFVEKSGAHYS 298

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           +   +LGQGREN+K +L+ N +IA  +E  +R      A+S+         +  D  + +
Sbjct: 299 YGAVKLGQGRENAKGYLKSNPDIANELEQKIRACL---AESMHSSDLFAVDERTDVLEEE 355


>gi|42518764|ref|NP_964694.1| recombinase A [Lactobacillus johnsonii NCC 533]
 gi|60392993|sp|P62216|RECA_LACJO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|41583050|gb|AAS08660.1| RecA protein [Lactobacillus johnsonii NCC 533]
          Length = 360

 Score =  362 bits (929), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 194/360 (53%), Positives = 270/360 (75%), Gaps = 7/360 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   DK KAL+ AL +I++ +GKGA+M++G +  +   I  + SGSL LD ALG+GG+P+
Sbjct: 1   MAKDDKKKALDIALKKIEKDFGKGAVMRMGEK--VDTQISTIPSGSLALDAALGVGGYPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQ
Sbjct: 59  GRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+GDMG+S  G+QARLMSQALRKL
Sbjct: 119 PNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGDMGDSHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + +IS++K I VFINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK    + 
Sbjct: 179 SGNISKTKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQGSDVI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ ++KVVKNK+A PFK  E DIMYG+GIS  GELID+     I+ K+G+W+S+   R+
Sbjct: 239 GNRVKLKVVKNKVAPPFKVAEVDIMYGKGISQTGELIDMAADKDIIKKAGSWYSYGDDRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ-EPAINTKDDAD----KDDTDN 361
           GQGREN+K +L E+ ++ E ++  +R+  G+ A ++ + E     K D +    KD +D 
Sbjct: 299 GQGRENAKQYLEEHPDVYEEVKEKVREAYGIDAKAIEERENPEKVKQDKEVPVNKDASDE 358


>gi|303239936|ref|ZP_07326458.1| recA protein [Acetivibrio cellulolyticus CD2]
 gi|302592415|gb|EFL62141.1| recA protein [Acetivibrio cellulolyticus CD2]
          Length = 350

 Score =  362 bits (929), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 202/328 (61%), Positives = 268/328 (81%), Gaps = 2/328 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           +++K KALE AL QI++ +GKGA+M+LG    +   +E + +G++GLDIALG+GG P+GR
Sbjct: 1   MIEKKKALEMALGQIEKQFGKGAVMKLGENTHM--NVETIPTGAMGLDIALGVGGVPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVE++GPESSGKTT+ALH IA++QK GG  AF+DAEHALD +YA+KLGV++ NL++SQPD
Sbjct: 59  IVEVFGPESSGKTTVALHIIAEAQKAGGEAAFIDAEHALDPVYAKKLGVNIDNLIVSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGA+D+IVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAIDVIVIDSVAALVPKAEIDGEMGDSHIGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            IS+SK   +FINQ+R K+G+MFG+PETT GG ALKFY+SVRLD+RR+ SIK    + GN
Sbjct: 179 VISKSKTTAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRRIESIKQGTEVIGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T+VKVVKNK+A PFK+ EFDI+YG+GIS  G ++D+ V   IV+KSGAWF++  Q++GQ
Sbjct: 239 RTKVKVVKNKVAPPFKEAEFDIIYGKGISKEGSILDVAVSLDIVNKSGAWFAYNNQKIGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAG 336
           GREN+K FL EN  I   I++ +R+N  
Sbjct: 299 GRENAKQFLMENTAIMSEIDAKIRENYN 326


>gi|156742909|ref|YP_001433038.1| recombinase A [Roseiflexus castenholzii DSM 13941]
 gi|189039603|sp|A7NN87|RECA_ROSCS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|156234237|gb|ABU59020.1| recA protein [Roseiflexus castenholzii DSM 13941]
          Length = 353

 Score =  362 bits (929), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 216/345 (62%), Positives = 274/345 (79%), Gaps = 1/345 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL AA+SQI R YGKG+IM++G   S    IEV+ +GS+ LDIALG+GG P+GR+
Sbjct: 5   PEKEKALAAAMSQIDRKYGKGSIMRMGEASSKL-AIEVIPTGSIALDIALGVGGVPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLA H IA++QK GG  AF+DAEHA D +YA++ GVD+ NLL+SQPD 
Sbjct: 64  VEIYGPESSGKTTLAQHIIAEAQKMGGVAAFIDAEHAFDPVYAKRCGVDVDNLLVSQPDY 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + LVRS AVD++V+DSVAAL PRAEIEGDMG+SLPG+QARLMSQALRKL+ +
Sbjct: 124 GEQALEICETLVRSNAVDVVVVDSVAALVPRAEIEGDMGDSLPGLQARLMSQALRKLSGA 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S+ +++F+NQ+R+KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++K+     G++
Sbjct: 184 ISKSRVVVIFLNQLRLKIGVMFGSPETTTGGQALKFYASVRMDIRRIETLKNGQETIGSR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PF+Q EFDIM+ EGIS  G ++D+GV+  I+ KSGAWF     RLGQG
Sbjct: 244 TRVKVVKNKVAPPFRQAEFDIMHNEGISRAGNILDVGVELDIIRKSGAWFYLGEDRLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           REN+K FL EN  +A+ IE L+R +A     S+    A +  DDA
Sbjct: 304 RENAKQFLNENPALADEIERLIRAHAMAAPISIAASKADDVVDDA 348


>gi|255326361|ref|ZP_05367445.1| protein RecA [Rothia mucilaginosa ATCC 25296]
 gi|255296578|gb|EET75911.1| protein RecA [Rothia mucilaginosa ATCC 25296]
          Length = 367

 Score =  362 bits (929), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 208/347 (59%), Positives = 269/347 (77%), Gaps = 2/347 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           ++KALEA ++QI + YGKGA+M+LG +       EV+S+G++ LD ALGIGG P+GR++E
Sbjct: 18  RAKALEAVMAQIDKNYGKGAVMRLGDKE--ITKTEVISTGAIALDAALGIGGLPRGRVIE 75

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH +A  QK GG  AF+DAEHALD IYA KLGVD+  LL+SQPDTGE
Sbjct: 76  IYGPESSGKTTVALHAVANVQKAGGVAAFIDAEHALDPIYAAKLGVDIDQLLVSQPDTGE 135

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DMLV SGAVDI+V+DSVAAL PRAEIEGDMG+S  G+QARLMSQALRK+T  +S
Sbjct: 136 QALEIMDMLVGSGAVDIVVVDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKITGRLS 195

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
            +    +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+DIRR+ ++KD  +  GN+TR
Sbjct: 196 ATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDIRRIETLKDGANPIGNRTR 255

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
            K+VKNKMA PFKQ EFDI+YGEGIS  G ++DL V+  IV KSGAWF++ G++LGQGRE
Sbjct: 256 AKIVKNKMAPPFKQAEFDILYGEGISVEGGILDLAVENDIVKKSGAWFTYDGEQLGQGRE 315

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           N +  L++N E+ E ++  +    G++ +   ++ A  ++ +   D+
Sbjct: 316 NVRKLLKDNPELTEELQYKVLVKLGIIEEEADEQAAAESEGNDPLDE 362


>gi|296802986|gb|ADH51569.1| DNA recombinase [Burkholderia cepacia]
          Length = 312

 Score =  362 bits (929), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 219/313 (69%), Positives = 272/313 (86%), Gaps = 1/313 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L
Sbjct: 1   QFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTL 59

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+
Sbjct: 60  QVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGS 119

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RM
Sbjct: 120 IDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRM 179

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++
Sbjct: 180 KIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRE 239

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
             FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA 
Sbjct: 240 AIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAR 299

Query: 326 NIESLLRQNAGLV 338
            IE+ +R++ G+V
Sbjct: 300 EIENRIRESLGVV 312


>gi|295101445|emb|CBK98990.1| RecA protein [Faecalibacterium prausnitzii L2-6]
          Length = 395

 Score =  362 bits (929), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 201/325 (61%), Positives = 260/325 (80%), Gaps = 3/325 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K  AL  AL+QI++ +GKGAIM+LG   ++   ++ +S+GSLGLD+ALG+GG P+GRI+E
Sbjct: 21  KKDALATALAQIEKQFGKGAIMKLGDNTAM--QVDAISTGSLGLDLALGVGGVPRGRIIE 78

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           ++GPESSGKTTLALH +A++QK GG  AF+D EHALD  YA  LGV++  LL+SQPDTGE
Sbjct: 79  VFGPESSGKTTLALHILAEAQKKGGEVAFIDVEHALDPAYASALGVNIDELLVSQPDTGE 138

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QA+EI + LVRSGA+D IV+DSVAA+ PRAEIEG+MG+S  G+QARLMSQA+RKLTS I 
Sbjct: 139 QAMEICEALVRSGAIDAIVVDSVAAMVPRAEIEGEMGDSHVGLQARLMSQAMRKLTSVIG 198

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQT 250
           ++  + VFINQ+R K+G+++G+PE TTGG ALK+YSSVR+DIRRV  +KD      GN T
Sbjct: 199 KTNTVCVFINQLREKVGIVYGNPEVTTGGRALKYYSSVRIDIRRVEGLKDSSGQFIGNHT 258

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R K+VKNK+A PF++ EFDIM+GEGIS   ELID+GVK  IV KSGAWF++   RLGQGR
Sbjct: 259 RAKIVKNKVAPPFREAEFDIMFGEGISKMSELIDVGVKLGIVQKSGAWFNYGDIRLGQGR 318

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
           +N+K FL++N EIA +IE  +R NA
Sbjct: 319 DNAKQFLKDNPEIANDIEGQIRANA 343


>gi|15488442|gb|AAL01117.1|AF410431_1 RecA [Leptospira biflexa serovar Patoc]
          Length = 387

 Score =  362 bits (929), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 211/351 (60%), Positives = 273/351 (77%), Gaps = 4/351 (1%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           D   E     + +A++AAL QI++ +GKG+IM+LG+   + E + VVS+GSL LDIALGI
Sbjct: 7   DKALEKETDQRKQAIDAALGQIEKQFGKGSIMRLGADTRMSE-MNVVSTGSLDLDIALGI 65

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GGFP GRI+EIYGPESSGKTTL L  IA++QK GG  AF+DAEHALD  YA+KLGV++ +
Sbjct: 66  GGFPSGRIIEIYGPESSGKTTLTLSAIAETQKKGGIAAFIDAEHALDPSYAKKLGVNVDD 125

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL++QPD GE+ALEI + LVRS A+D+IVIDSVAAL P+AEIEGDMG+S  G+QARLMSQ
Sbjct: 126 LLVAQPDNGEEALEICESLVRSNAIDLIVIDSVAALVPKAEIEGDMGDSHMGLQARLMSQ 185

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT +IS+S   ++FINQ+RMKIGVMFGSPETTTGGNALKFY+S+RLDIRR+ ++K+
Sbjct: 186 ALRKLTGTISKSSTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASIRLDIRRIETLKE 245

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
           K+   GN+ RVKVVKNK A PF+Q EFDIMY  GI+    LIDL V+  +V K+G+W+S+
Sbjct: 246 KEEPVGNRVRVKVVKNKCAPPFRQAEFDIMYANGINRESSLIDLAVRHDLVAKAGSWYSY 305

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
            G+++GQG+E  + F  EN +IA  IE+ +R    L A  LL +  I T++
Sbjct: 306 NGEKIGQGKEQVRNFFLENPDIAFKIENQVR---NLNALPLLDQAKIQTRE 353


>gi|325277019|ref|ZP_08142684.1| recombinase A [Pseudomonas sp. TJI-51]
 gi|324097855|gb|EGB96036.1| recombinase A [Pseudomonas sp. TJI-51]
          Length = 355

 Score =  362 bits (928), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 209/325 (64%), Positives = 266/325 (81%), Gaps = 2/325 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKRALAAALGQIERQFGKGAVMRMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAEAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVK+VKNK++ PF+Q EF I+YG+GI   GE+IDLGV   +V+KSGAW++++G ++GQG+
Sbjct: 242 RVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVAQGLVEKSGAWYAYQGNKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
            N+  +L EN  I   IE  +R+  
Sbjct: 302 ANAAKYLAENPAIGTEIERQIREKL 326


>gi|224551667|gb|ACN54233.1| RecA [Burkholderia arboris]
          Length = 318

 Score =  362 bits (928), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 220/314 (70%), Positives = 273/314 (86%), Gaps = 1/314 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L
Sbjct: 4   QFGKGSIMRMGD-GDATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTL 62

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+
Sbjct: 63  QVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGS 122

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RM
Sbjct: 123 IDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRM 182

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++
Sbjct: 183 KIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRE 242

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
             FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA 
Sbjct: 243 AIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAR 302

Query: 326 NIESLLRQNAGLVA 339
            IE+ +R++ G+V+
Sbjct: 303 EIENRIRESLGVVS 316


>gi|315499501|ref|YP_004088304.1| reca protein [Asticcacaulis excentricus CB 48]
 gi|315417513|gb|ADU14153.1| recA protein [Asticcacaulis excentricus CB 48]
          Length = 356

 Score =  362 bits (928), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 236/347 (68%), Positives = 296/347 (85%), Gaps = 1/347 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
            +  +K +ALE+AL+QI R +GKG++M+LG+ G + E +E +S+GSLGLD+ALGIGG PK
Sbjct: 11  KDEAEKQRALESALAQIDRAFGKGSVMKLGNAGKVVE-VESISTGSLGLDMALGIGGLPK 69

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++EIYGPESSGKTTLALHT+A+ QK GGT AFVDAEHALD +YA KLGV+L +LL+SQ
Sbjct: 70  GRVIEIYGPESSGKTTLALHTVAEIQKAGGTAAFVDAEHALDPVYAHKLGVNLDDLLVSQ 129

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEITD LVRSGAVDI+V+DSVAALTP+AEIEGDMG+SLPG+QARLMSQALRKL
Sbjct: 130 PDNGEQALEITDTLVRSGAVDIVVVDSVAALTPKAEIEGDMGDSLPGLQARLMSQALRKL 189

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+SIS+SKCI++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIR +G IK +D I 
Sbjct: 190 TASISKSKCIVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRSIGKIKVRDEIV 249

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN  RVKVVKNK+A PF++VEFDI+YGEGIS  GE++DLGVK  +V+K+G+WFSF   R+
Sbjct: 250 GNNVRVKVVKNKVAPPFREVEFDILYGEGISKLGEVLDLGVKGGVVEKAGSWFSFNSIRI 309

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           GQGREN++ FL+ N EIA  IE+L+R+ +  +++ LL  P  +   +
Sbjct: 310 GQGRENARDFLKSNPEIAAEIEALVRKKSDAISEELLGTPEPDEDGE 356


>gi|56416424|ref|YP_153498.1| recombinase A [Anaplasma marginale str. St. Maries]
 gi|76363318|sp|Q5PBT6|RECA_ANAMM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|56387656|gb|AAV86243.1| recA protein [Anaplasma marginale str. St. Maries]
          Length = 359

 Score =  362 bits (928), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 217/360 (60%), Positives = 284/360 (78%), Gaps = 5/360 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   K+    +K KAL+AA+SQI+R +G+GAIM+L  +    E ++ VS+GS+ LD ALG
Sbjct: 3   MSGSKKDVESEKQKALDAAISQIERAFGRGAIMKL--KQHPAEKMDSVSTGSIALDAALG 60

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG PKGRIVEI+GPESSGKTTLALH IA++QK GG CAF+DAEHALD++YARKLGV++ 
Sbjct: 61  IGGLPKGRIVEIFGPESSGKTTLALHVIAEAQKQGGNCAFIDAEHALDTVYARKLGVNVG 120

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +L++SQPDTGEQAL I + LV SGA+D+IV+DSVAALTPRAEIEGDMG+   G+QARL+S
Sbjct: 121 DLIVSQPDTGEQALHIVEYLVCSGAIDVIVVDSVAALTPRAEIEGDMGDQHMGLQARLLS 180

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
            ALRKLTS +S++ CILVFINQ+R+KIGV++G+PE TTGG+ALKFY+S+RLDIR+V +IK
Sbjct: 181 HALRKLTSVVSKANCILVFINQIRIKIGVIYGNPEVTTGGSALKFYTSIRLDIRKVSAIK 240

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           DKD++ GNQTRVKVVKNK+A PFKQ EFDI+Y EGIS  GE++D+GVK   V+KSGA +S
Sbjct: 241 DKDNVIGNQTRVKVVKNKVAPPFKQAEFDIVYNEGISKLGEIVDMGVKFGFVEKSGAHYS 300

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           +   +LGQGREN+K +L+ N ++A  +E  +R      A+S+         +  D  + +
Sbjct: 301 YGAVKLGQGRENAKGYLKSNPDVANELEQKIRACL---AESMHNSDLFAVDERTDVLEEE 357


>gi|296387879|ref|ZP_06877354.1| recombinase A [Pseudomonas aeruginosa PAb1]
          Length = 327

 Score =  362 bits (928), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 209/325 (64%), Positives = 268/325 (82%), Gaps = 2/325 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKRALAAALGQIERQFGKGAVMRMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAEAQKQGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF+Q EF I+YG+GI   GE+IDLGV+  +V+KSGAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKVSPPFRQAEFQILYGKGIYRTGEIIDLGVQLGLVEKSGAWYSYQGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
            N+  +L +N EI   +E  +R   
Sbjct: 302 ANAAKYLEDNPEIGSVLEKTIRDQL 326


>gi|332172802|gb|AEE22056.1| recA protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 343

 Score =  362 bits (928), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 225/342 (65%), Positives = 278/342 (81%), Gaps = 2/342 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K++AL AAL QI++ +GKGAIM+LG   ++   IE VS+GSL +DIALGIGG P GR+V
Sbjct: 4   NKNRALTAALGQIEKQFGKGAIMRLGDNQAM--DIEAVSTGSLTIDIALGIGGLPCGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD +YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAEAQKMGKTCAFVDAEHALDPVYAGKLGVNIDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGAVD++V+DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT +I
Sbjct: 122 EQALEICDMLVRSGAVDVVVVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            RS  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD D + GN+T
Sbjct: 182 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDGDEVVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF IMYG+GI    ELIDLGVK  +V+K+GAW+S+ G+R+GQG+
Sbjct: 242 RVKVVKNKVAPPFKQAEFQIMYGQGICKEAELIDLGVKQKLVEKAGAWYSYNGERIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
            N   +L+E+ E++ +IE  LR    L       EP    ++
Sbjct: 302 ANVVKYLKEHTEMSNDIEQKLRAELLLKKTVKADEPLKADEE 343


>gi|284007756|emb|CBA73583.1| recombinase A [Arsenophonus nasoniae]
          Length = 356

 Score =  362 bits (928), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 207/352 (58%), Positives = 277/352 (78%), Gaps = 6/352 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDVALGAGGLPLGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GS+K+ + + G++T
Sbjct: 184 KNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKNGEEVIGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+ + ELIDLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINIYSELIDLGVKYKLIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ----NAGLVADSLLQEPAINTKDDADKDD 358
            N+ ++L+E  +I   ++  LR     +AG  + +         ++ +  ++
Sbjct: 304 ANATVYLKERPQIYTELDKKLRAMLLNHAGEFSSAASDFVTEAVEETSLPEE 355


>gi|269215585|ref|ZP_06159439.1| protein RecA [Slackia exigua ATCC 700122]
 gi|269131072|gb|EEZ62147.1| protein RecA [Slackia exigua ATCC 700122]
          Length = 349

 Score =  362 bits (928), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 196/350 (56%), Positives = 253/350 (72%), Gaps = 2/350 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   +E    DK  +L+    QI++ +GKG+IM+LG   S  E + V+ +G+L LD ALG
Sbjct: 1   MARTQEPKTYDKPDSLKLTTDQIEKKFGKGSIMKLGEGSSDLE-VGVIPTGALALDAALG 59

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG P+GRI+EIYGPESSGKTTLAL  IA++Q  GG  AF+DAEHALD  YA +LGVD+ 
Sbjct: 60  IGGVPRGRIIEIYGPESSGKTTLALQIIAEAQAAGGIVAFIDAEHALDPTYAARLGVDID 119

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            +LISQPD GEQALEI DMLVRS A+  IVIDSVAAL PRAEIEG++G+   G QARLMS
Sbjct: 120 EVLISQPDYGEQALEICDMLVRSNAISAIVIDSVAALVPRAEIEGEIGDVTVGAQARLMS 179

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKL  S+S+S    +FINQ+R KIGV FG+PETTTGG ALKF++SVR+DIRR+ ++K
Sbjct: 180 QALRKLAGSLSKSNTTCIFINQLREKIGVSFGNPETTTGGRALKFFASVRIDIRRIETLK 239

Query: 241 D-KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           +  +   GN+ R KVVKNK+A PF Q EFD+MYG GIS  G ++D+GV A +V KSGAW+
Sbjct: 240 NRNNEPVGNRVRAKVVKNKVAPPFHQAEFDLMYGTGISREGCIVDMGVDAGVVRKSGAWY 299

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
           ++  +RLGQGRE +K  LR N ++ + IE+ +R    +       + +  
Sbjct: 300 TYGEERLGQGREAAKELLRTNPDLRDEIEAKVRDFFDIPLVGATADASAE 349


>gi|312865796|ref|ZP_07726018.1| RecA protein [Streptococcus downei F0415]
 gi|311098671|gb|EFQ56893.1| RecA protein [Streptococcus downei F0415]
          Length = 382

 Score =  362 bits (928), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 199/356 (55%), Positives = 269/356 (75%), Gaps = 6/356 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGAIM+LG +    + ++V+SSGSL LDIALG+GG+PKGRI+
Sbjct: 18  ERKKALDDALKTIEKDFGKGAIMKLGERAD--QKVQVMSSGSLALDIALGVGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAVALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+R    IK     KDS  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRGNTQIKGTGDQKDSSI 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK  + +IMYGEGIS  GEL+ +     I+ K+GAW+S+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKVAQVEIMYGEGISRTGELVKIATDLDIIQKAGAWYSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           GQG EN+K +L +N E+ + I+  +R   GL+ D    E      D A+K + + +
Sbjct: 316 GQGSENAKKYLADNPEVFDEIDKKVRIKYGLIEDDKTPEEPATEADSANKSEPEEL 371


>gi|222474794|ref|YP_002563209.1| recA protein (recA) [Anaplasma marginale str. Florida]
 gi|254790419|sp|B9KHJ1|RECA_ANAMF RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|222418930|gb|ACM48953.1| recA protein (recA) [Anaplasma marginale str. Florida]
          Length = 359

 Score =  362 bits (928), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 218/360 (60%), Positives = 284/360 (78%), Gaps = 5/360 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   K+    +K KAL+AA+SQI+R +G+GAIM+L  +    E ++ VS+GS+ LD ALG
Sbjct: 3   MSGSKKDVESEKQKALDAAISQIERAFGRGAIMKL--KQHPAEKMDSVSTGSIALDAALG 60

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG PKGRIVEI+GPESSGKTTLALH IA++QK GG CAF+DAEHALD++YARKLGV++ 
Sbjct: 61  IGGLPKGRIVEIFGPESSGKTTLALHVIAEAQKQGGNCAFIDAEHALDTVYARKLGVNVG 120

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +L++SQPDTGEQAL I + LV SGA+D+IV+DSVAALTPRAEIEGDMG+   G+QARL+S
Sbjct: 121 DLIVSQPDTGEQALHIVEYLVCSGAIDVIVVDSVAALTPRAEIEGDMGDQHMGLQARLLS 180

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
            ALRKLTS +S++ CILVFINQ+R+KIGV++G+PE TTGG+ALKFY+S+RLDIR+V +IK
Sbjct: 181 HALRKLTSVVSKANCILVFINQIRIKIGVIYGNPEVTTGGSALKFYTSIRLDIRKVSAIK 240

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           DKD++ GNQTRVKVVKNK+A PFKQ EFDI+Y EGIS  GE++D+GVK   V+KSGA +S
Sbjct: 241 DKDNVIGNQTRVKVVKNKVAPPFKQAEFDIVYNEGISKLGEIVDMGVKFGFVEKSGAHYS 300

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           +   +LGQGREN+K +L+ N +IA  +E  +R      A+S+         +  D  + +
Sbjct: 301 YGAVKLGQGRENAKGYLKSNPDIANELEQKIRACL---AESMHSSDLFAVDERTDVLEEE 357


>gi|259595805|gb|ACW83541.1| RecA [Vibrio cholerae O1]
          Length = 337

 Score =  362 bits (928), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 202/335 (60%), Positives = 265/335 (79%), Gaps = 2/335 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
            QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGK
Sbjct: 1   GQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGK 58

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L
Sbjct: 59  TTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDAL 118

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FI
Sbjct: 119 ARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFI 178

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A
Sbjct: 179 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIA 238

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
           +PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+ N+  +L+EN
Sbjct: 239 APFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKEN 298

Query: 321 IEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            EIA+ ++  LR       +  L     +  DD +
Sbjct: 299 PEIAKTLDKKLRDMLVNPENMQLTAETSSAADDVE 333


>gi|296803012|gb|ADH51582.1| DNA recombinase [Burkholderia multivorans]
          Length = 314

 Score =  362 bits (928), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 220/314 (70%), Positives = 273/314 (86%), Gaps = 1/314 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L
Sbjct: 1   QFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTL 59

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVRSG+
Sbjct: 60  QVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRSGS 119

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RM
Sbjct: 120 IDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRM 179

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++
Sbjct: 180 KIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRE 239

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
             FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA 
Sbjct: 240 AIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAR 299

Query: 326 NIESLLRQNAGLVA 339
            IE+ +R++ G+ A
Sbjct: 300 EIENRIRESLGVAA 313


>gi|325849670|ref|ZP_08170873.1| RecA protein [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480011|gb|EGC83089.1| RecA protein [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 349

 Score =  362 bits (928), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 202/340 (59%), Positives = 265/340 (77%), Gaps = 5/340 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   K+    DK KAL  A   I++ YGKGAIM++G    +   + V+ +G++ LD+ALG
Sbjct: 1   MAGEKDK---DKEKALSQAFKNIEKKYGKGAIMKMGEAPKV--DVTVIPTGAINLDMALG 55

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG P+GR++EI+GPESSGKTTL LH IA+ QK G TCAF+DAEHA+D+ YA++LGV++ 
Sbjct: 56  VGGLPRGRVIEIFGPESSGKTTLTLHCIAEDQKLGNTCAFIDAEHAMDAEYAKRLGVNID 115

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            L+++QPDTGEQAL+I + LVRS AVD+IV+DSVAAL PRAEIEG+MG+S  G+QARLMS
Sbjct: 116 ELILAQPDTGEQALDIAESLVRSAAVDLIVVDSVAALVPRAEIEGEMGDSHMGLQARLMS 175

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALR+LT  IS+S   ++FINQ+R KIGVMFG+PETTTGG ALKFYSSVRLDIRR+ +I+
Sbjct: 176 QALRRLTGIISKSNTTVIFINQLREKIGVMFGNPETTTGGRALKFYSSVRLDIRRIKTIQ 235

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             D++ GN+TRVKVVKNK+A PFK VEFDIMYG GIS  G ++D  V   IV+K+G+W+S
Sbjct: 236 QGDNMVGNRTRVKVVKNKVAPPFKVVEFDIMYGTGISKSGVILDSAVDKDIVEKAGSWYS 295

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           + G++LGQGREN K +L EN +I   IE+ LR++     +
Sbjct: 296 YNGEKLGQGRENVKQYLEENEDILNEIENKLRESINPDTN 335


>gi|255003895|ref|ZP_05278696.1| recombinase A [Anaplasma marginale str. Virginia]
          Length = 357

 Score =  362 bits (928), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 216/360 (60%), Positives = 283/360 (78%), Gaps = 5/360 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   K+    +K KAL+AA+SQI+R +G+GAIM+L  +    E ++ VS+GS+ LD ALG
Sbjct: 1   MSGSKKDVESEKQKALDAAISQIERAFGRGAIMKL--KQHPAEKMDSVSTGSIALDAALG 58

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG PKGRIVEI+GPESSGKTTLALH IA++QK GG CAF+DAEHALD++YARKLGV++ 
Sbjct: 59  IGGLPKGRIVEIFGPESSGKTTLALHVIAEAQKQGGNCAFIDAEHALDTVYARKLGVNVG 118

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +L++SQPDTGEQAL I + LV SGA+D+IV+DSVAALTPRAEIEGDMG+   G+QARL+S
Sbjct: 119 DLIVSQPDTGEQALHIVEYLVCSGAIDVIVVDSVAALTPRAEIEGDMGDQHMGLQARLLS 178

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
            ALRKLTS +S++ CILVFINQ+R+KIGV++G+PE TTGG+ALKFY+S+RLDIR+V +IK
Sbjct: 179 HALRKLTSVVSKANCILVFINQIRIKIGVIYGNPEVTTGGSALKFYTSIRLDIRKVSAIK 238

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           DKD++ GN TRVKVVKNK+A PFKQ EFDI+Y EGIS  GE++D+GVK   V+KSGA +S
Sbjct: 239 DKDNVIGNHTRVKVVKNKVAPPFKQAEFDIVYNEGISKLGEIVDMGVKFGFVEKSGAHYS 298

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           +   +LGQGREN+K +L+ N ++A  +E  +R      A+S+         +  D  + +
Sbjct: 299 YGAVKLGQGRENAKGYLKSNPDVANELEQKIRACL---AESMHNSDLFAVDERTDVLEEE 355


>gi|70904862|gb|AAZ14010.1| RecA [Burkholderia multivorans]
 gi|70904870|gb|AAZ14014.1| RecA [Burkholderia multivorans]
          Length = 318

 Score =  362 bits (928), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 220/314 (70%), Positives = 273/314 (86%), Gaps = 1/314 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L
Sbjct: 4   QFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTL 62

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVRSG+
Sbjct: 63  QVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRSGS 122

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RM
Sbjct: 123 IDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRM 182

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++
Sbjct: 183 KIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRE 242

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
             FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA 
Sbjct: 243 AIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAR 302

Query: 326 NIESLLRQNAGLVA 339
            IE+ +R++ G+ A
Sbjct: 303 EIENRIRESLGVAA 316


>gi|282851429|ref|ZP_06260794.1| RecA protein [Lactobacillus gasseri 224-1]
 gi|282557397|gb|EFB62994.1| RecA protein [Lactobacillus gasseri 224-1]
          Length = 342

 Score =  362 bits (928), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 187/343 (54%), Positives = 262/343 (76%), Gaps = 2/343 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   DK KAL+ AL +I++ +GKGA+M++G +  +   I  + SGSL LD ALG+GG+P+
Sbjct: 1   MAKDDKKKALDIALKKIEKDFGKGAVMRMGEK--VDTQISTIPSGSLALDAALGVGGYPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQ
Sbjct: 59  GRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+GDMG+S  G+QARLMSQALRKL
Sbjct: 119 PNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGDMGDSHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + +IS++K I VFINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK    + 
Sbjct: 179 SGNISKTKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQGSDVI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ ++KVVKNK+A PFK  E DIMYG+GIS  GELID+     I+ K+G+W+S+   R+
Sbjct: 239 GNRVKLKVVKNKVAPPFKVAEVDIMYGKGISQTGELIDMAADKDIIKKAGSWYSYGDDRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
           GQGREN+K +L E+ ++ + ++  +R+  G+ A ++ +     
Sbjct: 299 GQGRENAKQYLEEHPDVYDEVKEKVRKAYGIDAKAIEERENPE 341


>gi|254242315|ref|ZP_04935637.1| RecA protein [Pseudomonas aeruginosa 2192]
 gi|126195693|gb|EAZ59756.1| RecA protein [Pseudomonas aeruginosa 2192]
          Length = 346

 Score =  362 bits (928), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 211/347 (60%), Positives = 273/347 (78%), Gaps = 4/347 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AAL QI+R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKKRALAAALGQIERQFGKGAVMRMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++QKTG TC  VD E  LD  YA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLSVIAEAQKTGATCCSVDVEPPLDPDYAGKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T +I
Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++K+ D + G++T
Sbjct: 182 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PF+Q EF I+YG+GI   GE+IDLGV+  +V+KSGAW+S++G ++GQG+
Sbjct: 242 RVKVVKNKVSPPFRQAEFQILYGKGIYRTGEIIDLGVQLGLVEKSGAWYSYQGSKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
            N+  +L +N EI   +E  +R    L+A S   +       DA+ D
Sbjct: 302 ANAAKYLEDNPEIGSVLEKTIRGQ--LLAKSGPVKADAEEVADAEAD 346


>gi|261866979|ref|YP_003254901.1| recombinase A [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|293391311|ref|ZP_06635645.1| protein RecA [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|261412311|gb|ACX81682.1| protein RecA [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|290951845|gb|EFE01964.1| protein RecA [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 352

 Score =  362 bits (928), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 223/347 (64%), Positives = 280/347 (80%), Gaps = 2/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AAL QI++ +GKGAIM+LG    +   IE +S+GS GLD+ALGIGG P GRIV
Sbjct: 6   EKQKALDAALGQIEKQFGKGAIMKLGDSQKL--DIEAISTGSFGLDLALGIGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA++QKTG TCAF+DAEHALD IYA KLGVD+K LL+SQPD G
Sbjct: 64  EIFGPESSGKTTLTLSVIAEAQKTGKTCAFIDAEHALDPIYASKLGVDVKELLVSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLTS I
Sbjct: 124 EQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTSQI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRRVGSIK+ D + GN+T
Sbjct: 184 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRVGSIKEGDEVIGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+QV+F I+YGEGIS   ELI+LGVK  ++ K+GAW++++ +++GQG+
Sbjct: 244 RVKVVKNKVAPPFRQVDFQILYGEGISKESELIELGVKHKLISKAGAWYAYQNEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
            N+  +L++N E A+ IES LR       +S +     N   + + D
Sbjct: 304 TNAMKWLKDNPEQAKFIESTLRDELLAHPESAITAEVENEAGNGEGD 350


>gi|157326939|gb|ABV44582.1| RecA [Burkholderia multivorans]
          Length = 311

 Score =  361 bits (927), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 218/312 (69%), Positives = 272/312 (87%), Gaps = 1/312 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI
Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299

Query: 324 AENIESLLRQNA 335
           A  IE+ +R++ 
Sbjct: 300 AREIENRIRESL 311


>gi|183221815|ref|YP_001839811.1| recombinase A [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189911887|ref|YP_001963442.1| recombinase A [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|193806431|sp|B0SLE9|RECA_LEPBP RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238687836|sp|B0SCX2|RECA_LEPBA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|167776563|gb|ABZ94864.1| RecA recombinase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167780237|gb|ABZ98535.1| Protein RecA (Recombinase A) [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 387

 Score =  361 bits (927), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 211/351 (60%), Positives = 273/351 (77%), Gaps = 4/351 (1%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           D   E     + +A++AAL QI++ +GKG+IM+LG+   + E + VVS+GSL LDIALGI
Sbjct: 7   DKALEKETDQRKQAIDAALGQIEKQFGKGSIMRLGADTRMSE-MNVVSTGSLDLDIALGI 65

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GGFP GRI+EIYGPESSGKTTL L  IA++QK GG  AF+DAEHALD  YA+KLGV++ +
Sbjct: 66  GGFPSGRIIEIYGPESSGKTTLTLSAIAETQKKGGIAAFIDAEHALDPSYAKKLGVNVDD 125

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL++QPD GE+ALEI + LVRS A+D+IVIDSVAAL P+AEIEGDMG+S  G+QARLMSQ
Sbjct: 126 LLVAQPDNGEEALEICESLVRSNAIDLIVIDSVAALVPKAEIEGDMGDSHMGLQARLMSQ 185

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT +IS+S   ++FINQ+RMKIGVMFGSPETTTGGNALKFY+S+RLDIRR+ ++K+
Sbjct: 186 ALRKLTGTISKSSTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASIRLDIRRIETLKE 245

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
           K+   GN+ RVKVVKNK A PF+Q EFDIMY  GI+    LIDL V+  +V K+G+W+S+
Sbjct: 246 KEEPVGNRVRVKVVKNKCAPPFRQAEFDIMYANGINRESSLIDLAVRHDLVAKAGSWYSY 305

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
            G+++GQG+E  + F  EN +IA  IE+ +R    L A  LL +  I T++
Sbjct: 306 NGEKIGQGKEQVRNFFLENPDIAFKIENQVRD---LNALPLLDQAKIQTRE 353


>gi|31540551|gb|AAP49238.1| RecA [Mycobacterium mucogenicum]
          Length = 315

 Score =  361 bits (927), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 199/311 (63%), Positives = 253/311 (81%), Gaps = 2/311 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE AL+QI + +GKG++M+LG +    + I  + +GS+ LD+ALGIGG P+GR+
Sbjct: 6   PDREKALELALAQIDKSFGKGSVMRLGEETR--QPISDIPTGSIALDVALGIGGLPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD   LL+SQPDT
Sbjct: 64  IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 124 GEQALEIADMLVRSGAMDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+
Sbjct: 184 LNNSGTTAIFINQLRXKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVK+VKNK+A PFKQ EFDI+YG GIS  G LID+GV+   + KSG+WF++ G++LGQG
Sbjct: 244 TRVKIVKNKVAPPFKQAEFDILYGRGISREGSLIDMGVEHGFIRKSGSWFTYDGEQLGQG 303

Query: 310 RENSKIFLREN 320
           +EN++ FL EN
Sbjct: 304 KENARNFLLEN 314


>gi|300705087|ref|YP_003746690.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Ralstonia solanacearum CFBP2957]
 gi|299072751|emb|CBJ44104.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Ralstonia solanacearum CFBP2957]
          Length = 352

 Score =  361 bits (927), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 216/330 (65%), Positives = 276/330 (83%), Gaps = 2/330 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G   +  E ++VVS+GSLGLD+ALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 25  IEKQFGKGSIMKMGD--AEVEPVQVVSTGSLGLDVALGVGGLPRGRVVEIYGPESSGKTT 82

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +A+ QK GGTCAF+DAEHALD  YA KLGV + +LLISQPDTGEQALEI D LVR
Sbjct: 83  LTLQVVAEMQKLGGTCAFIDAEHALDVTYADKLGVKVPDLLISQPDTGEQALEIADALVR 142

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG+VD+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 143 SGSVDLIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 202

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T+VKVVKNK+A P
Sbjct: 203 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKRGDDVVGNETKVKVVKNKVAPP 262

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YG G+S  GE+IDLGV+A +V+KSGAW+S+ G+R+GQGR+N + FLREN E
Sbjct: 263 FREAIFDILYGAGVSREGEIIDLGVEAKVVEKSGAWYSYNGERIGQGRDNCREFLRENPE 322

Query: 323 IAENIESLLRQNAGLVADSLLQEPAINTKD 352
           +A  IE+ +R++ G+V    +       +D
Sbjct: 323 LAREIENKVREHLGVVPMGAVVLAEEVEED 352


>gi|327440979|dbj|BAK17344.1| RecA/RadA recombinase [Solibacillus silvestris StLB046]
          Length = 358

 Score =  361 bits (927), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 200/329 (60%), Positives = 261/329 (79%), Gaps = 2/329 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG++M+LG   +    +E  SSGS+ +D ALGIGG+P+GR
Sbjct: 1   MSDRKAALDMALKQIEKQFGKGSVMKLGENSN--RHMETTSSGSIAIDAALGIGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVE+YGPESSGKTT+ LH IA+ Q  GGT AF+DAEHALD +YA+KLGV++  LL+SQPD
Sbjct: 59  IVEVYGPESSGKTTVTLHAIAEIQANGGTAAFIDAEHALDPVYAQKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGA+DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            I++S  + +FINQ+R KIGVMFG+PETTTGG ALKFYSS+RL++RR  +IK    I GN
Sbjct: 179 VINKSNTLAIFINQVREKIGVMFGNPETTTGGRALKFYSSIRLEVRRGEAIKQGTEIIGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++KVVKNK+A PF+  E DIMYGEGIS  GE++D+G +  I+ KSG+W+S+  +R+GQ
Sbjct: 239 KTKIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIVDIGAELDIIQKSGSWYSYNSERIGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGL 337
           GREN K F +EN  I E +   +RQ+ G+
Sbjct: 299 GRENVKQFFKENPAIKEEVTEKIRQHFGI 327


>gi|291166395|gb|EFE28441.1| RecA protein [Filifactor alocis ATCC 35896]
          Length = 378

 Score =  361 bits (927), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 210/360 (58%), Positives = 279/360 (77%), Gaps = 9/360 (2%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            ++ K L+A +S+I+R +GKGA+M LG    +   IE +S+GSLGLD+A+G+GG PKGRI
Sbjct: 19  AERKKVLDATISKIERDFGKGAVMMLGDNIDM--NIETISTGSLGLDLAIGVGGLPKGRI 76

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A++QK GG  AF+DAEHA+D +YA+ LGVD+ NL+ISQPD 
Sbjct: 77  IEIYGPESSGKTTVALHAVAEAQKAGGLAAFIDAEHAMDPVYAKALGVDIDNLIISQPDN 136

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + LV+SG +DI+VIDSVAAL PR+EIEGDMG+S  G+QARLMSQALRKLT+S
Sbjct: 137 GEQALEIAESLVKSGVIDILVIDSVAALVPRSEIEGDMGDSHVGLQARLMSQALRKLTAS 196

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +R K +++FINQ+R KIGVMFG+PETTTGG ALKFYS++RLDIR+  +IK  D + GN+
Sbjct: 197 TNRFKTVIIFINQLREKIGVMFGNPETTTGGRALKFYSTLRLDIRKFDTIKKNDVVVGNR 256

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PF+Q EFDIMYGEGIS  GE++D+  +  I++K+G+W+S+   ++GQG
Sbjct: 257 TRVKVVKNKVAPPFRQAEFDIMYGEGISRAGEIVDIASQYGIIEKAGSWYSYNDMKIGQG 316

Query: 310 RENSKIFLRENIEIAENIESLLRQNA-------GLVADSLLQEPAINTKDDADKDDTDNV 362
           REN K FL +N E+ E IE  +R+           + +  L E  +N  D +D DDT ++
Sbjct: 317 RENVKQFLLDNQEMMEEIEGQVRRTLLKSHVSENDLIEDALSETKVNMDDFSDLDDTVDL 376


>gi|89143139|emb|CAJ41871.1| recombinase A [Pseudochrobactrum saccharolyticum]
          Length = 302

 Score =  361 bits (927), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 238/303 (78%), Positives = 276/303 (91%), Gaps = 1/303 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL+AALSQI+R +GKG+IM+LG    + E IE V +GSL LDIALG+GG PKGRIVEIY
Sbjct: 1   KALDAALSQIERSFGKGSIMRLGQNDKVVE-IETVPTGSLSLDIALGVGGLPKGRIVEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTT+ALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQA
Sbjct: 60  GPESSGKTTMALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 LEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 179

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
             +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D I GNQTRVK
Sbjct: 180 NTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEIVGNQTRVK 239

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA IV+KSG+WFS+  QRLGQGR+N+
Sbjct: 240 VVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGIVEKSGSWFSYNSQRLGQGRDNA 299

Query: 314 KIF 316
           K F
Sbjct: 300 KNF 302


>gi|296114920|ref|ZP_06833567.1| protein recA (recombinase A) [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978521|gb|EFG85252.1| protein recA (recombinase A) [Gluconacetobacter hansenii ATCC
           23769]
          Length = 359

 Score =  361 bits (927), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 243/342 (71%), Positives = 295/342 (86%), Gaps = 2/342 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK KALE ALSQI+R +GKG+IM++G +      ++V+S+GSLGLDI LGIGG P+GRI
Sbjct: 20  IDKGKALEGALSQIERAFGKGSIMRMGERPKT--EVDVISTGSLGLDIGLGIGGLPRGRI 77

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH IA++QK GGTCAF+DAEHALD  YARKLGVD+ +LLISQPD 
Sbjct: 78  VEIYGPESSGKTTMALHAIAEAQKKGGTCAFIDAEHALDPGYARKLGVDVDSLLISQPDA 137

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++VIDSVAAL PRAE+EG+MG+S  G+ ARLMSQALRKLT S
Sbjct: 138 GEQALEIADTLVRSGAIDVLVIDSVAALVPRAELEGEMGDSHVGLHARLMSQALRKLTGS 197

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +SRS  +++F+NQ+R+KIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDKD + GNQ
Sbjct: 198 VSRSNTMMIFLNQIRLKIGVMFGSPETTTGGNALKFYASVRMDIRRIGSIKDKDEVVGNQ 257

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PF+QVEFDIMYGEGIS  GELIDLGVKA IV+KSGAWFS   QR+GQG
Sbjct: 258 TRVKVVKNKMAPPFRQVEFDIMYGEGISKMGELIDLGVKAGIVEKSGAWFSCDSQRIGQG 317

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           REN+K FLR++ E+A +IE  +R+ AG+VA+++L  P  + +
Sbjct: 318 RENAKQFLRDHPEMAADIERRVREQAGVVAEAMLVGPDDDAE 359


>gi|270290981|ref|ZP_06197204.1| RecA protein [Pediococcus acidilactici 7_4]
 gi|304385253|ref|ZP_07367598.1| recombination protein A [Pediococcus acidilactici DSM 20284]
 gi|270280377|gb|EFA26212.1| RecA protein [Pediococcus acidilactici 7_4]
 gi|304328460|gb|EFL95681.1| recombination protein A [Pediococcus acidilactici DSM 20284]
          Length = 351

 Score =  361 bits (927), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 192/353 (54%), Positives = 273/353 (77%), Gaps = 7/353 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ +AL  AL +I++ +GKG+IM++G   ++   I  + SGSL LD ALG+GG+PKGRIV
Sbjct: 4   ERKEALNKALKKIEKNFGKGSIMRMGD--AVDTQISTIPSGSLALDDALGVGGYPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYATNLGVNIDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ L I D LV SGA+D++VIDSVAAL PRAEI+G+MG++  G+QAR+MSQALRKL+ SI
Sbjct: 122 EEGLAIADALVSSGAIDLVVIDSVAALVPRAEIDGEMGDAHVGLQARMMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+G+MFG+PETT GG ALKFY+++RL++RR   IKD   + GN+ 
Sbjct: 182 NKTKTIALFINQIREKVGIMFGNPETTPGGRALKFYATIRLEVRRAEQIKDGSDVIGNRV 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK+ E DIMYGEGIS  GE+ID+ V+  IV KSG+W+S+  +R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKRAEVDIMYGEGISQTGEMIDMAVEKDIVGKSGSWYSYGEERIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           EN+K ++ ++ ++   + + +R+  G+VAD     PA   K+D+ +DD   ++
Sbjct: 302 ENAKKYMEDHPDVRAEVLAKVREAYGMVAD-----PASEVKEDSKQDDQAELD 349


>gi|239631178|ref|ZP_04674209.1| RecA protein [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|301065939|ref|YP_003787962.1| recA/RadA recombinase [Lactobacillus casei str. Zhang]
 gi|239525643|gb|EEQ64644.1| RecA protein [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|300438346|gb|ADK18112.1| RecA/RadA recombinase [Lactobacillus casei str. Zhang]
          Length = 353

 Score =  361 bits (927), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 194/345 (56%), Positives = 268/345 (77%), Gaps = 2/345 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   ++ KAL+ AL +I++ +GKGAIM++G++      + VVSSGSL +D ALG+GGFP+
Sbjct: 1   MAGDERQKALDVALKKIEKNFGKGAIMRMGAKADTR--VSVVSSGSLAVDDALGVGGFPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGV++  LL+SQ
Sbjct: 59  GRIVEIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQ LEI D LV SGA+DI+VIDSVAAL PRAEIEGDMG++  G+QARLMSQALRKL
Sbjct: 119 PDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + SI+++K I +FINQ+R K+G++FGSPETT GG ALKFY++VRL+IRR   IK    + 
Sbjct: 179 SGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+T++KVVKNK+A PF+    DIMYG+GIS  GEL+D+ V+  IV+K+G+W++++G+R+
Sbjct: 239 GNRTKIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKAGSWYAYQGERI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           GQGREN+K +L  + ++ + I+  +R   G+ A    +  +++  
Sbjct: 299 GQGRENAKTYLDNHADLQQTIKQQVRVAYGMAAAPGRETASVSED 343


>gi|292670968|ref|ZP_06604394.1| recombination protein A [Selenomonas noxia ATCC 43541]
 gi|292647589|gb|EFF65561.1| recombination protein A [Selenomonas noxia ATCC 43541]
          Length = 349

 Score =  361 bits (927), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 208/341 (60%), Positives = 263/341 (77%), Gaps = 1/341 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + +ALE AL QI++ +GKG+IM+LG   +    IEV+S+G L LDIALG+GG P+GRI+E
Sbjct: 10  REEALENALKQIEKTHGKGSIMRLGEAKANMN-IEVISTGILPLDIALGVGGIPRGRIIE 68

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTT+ LH IA++QK GG  AF+DAEHALD  YARKLGV++++LLISQPDTGE
Sbjct: 69  VYGPESSGKTTVTLHMIAEAQKAGGIAAFIDAEHALDPEYARKLGVNIEDLLISQPDTGE 128

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSGA+DIIV+DSVAAL P++EI+ DMG S  G+QARLMSQA+RKLT  IS
Sbjct: 129 QALEIVDALVRSGAIDIIVVDSVAALVPKSEIDEDMGSSHVGLQARLMSQAMRKLTGIIS 188

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +++ + VFINQ+R KIGV +G+PETTTGG ALKFY+SVR+D+RR  SIK      GN+TR
Sbjct: 189 KTRTVAVFINQLREKIGVTYGNPETTTGGRALKFYASVRIDVRRADSIKQGTESLGNRTR 248

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
            K+VKNK+A PFK  EFDIMYGEG+S  G +ID+GV   IV+KSGAW+S+ G RLGQG+E
Sbjct: 249 AKIVKNKVAPPFKTAEFDIMYGEGVSRLGSIIDMGVDLDIVEKSGAWYSYNGTRLGQGKE 308

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           N+KI L  N +I   IE  +R       +S  QE +    +
Sbjct: 309 NAKITLEGNPDIIAEIEEKIRGKLLAKPESAAQENSAGVPE 349


>gi|227889603|ref|ZP_04007408.1| recombination protein A [Lactobacillus johnsonii ATCC 33200]
 gi|227849851|gb|EEJ59937.1| recombination protein A [Lactobacillus johnsonii ATCC 33200]
          Length = 363

 Score =  361 bits (927), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 194/360 (53%), Positives = 270/360 (75%), Gaps = 7/360 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   DK KAL+ AL +I++ +GKGA+M++G +  +   I  + SGSL LD ALG+GG+P+
Sbjct: 1   MAKDDKKKALDIALKKIEKDFGKGAVMRMGEK--VDTQISTIPSGSLALDAALGVGGYPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQ
Sbjct: 59  GRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+GDMG+S  G+QARLMSQALRKL
Sbjct: 119 PNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGDMGDSHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + +IS++K I VFINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK    + 
Sbjct: 179 SGNISKTKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQGSDVI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ ++KVVKNK+A PFK  E DIMYG+GIS  GELID+     I+ K+G+W+S+   R+
Sbjct: 239 GNRVKLKVVKNKVAPPFKVAEVDIMYGKGISQTGELIDMAADKDIIKKAGSWYSYGDDRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ-EPAINTKDDAD----KDDTDN 361
           GQGREN+K +L E+ ++ E ++  +R+  G+ A ++ + E     K D +    KD +D 
Sbjct: 299 GQGRENAKQYLEEHPDVYEEVKEKVREAYGIDAKAIEERENPEKVKQDKEVPVNKDASDE 358


>gi|224551695|gb|ACN54247.1| RecA [Burkholderia cenocepacia]
          Length = 319

 Score =  361 bits (927), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 220/316 (69%), Positives = 273/316 (86%), Gaps = 1/316 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L
Sbjct: 5   QFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTL 63

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+
Sbjct: 64  QVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGS 123

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RM
Sbjct: 124 IDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRM 183

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++
Sbjct: 184 KIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRE 243

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
             FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA 
Sbjct: 244 AIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAR 303

Query: 326 NIESLLRQNAGLVADS 341
            IE+ +R++ G+V+  
Sbjct: 304 EIENRIRESLGVVSSP 319


>gi|152991399|ref|YP_001357121.1| recombinase A [Nitratiruptor sp. SB155-2]
 gi|166220660|sp|A6Q5K5|RECA_NITSB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|151423260|dbj|BAF70764.1| DNA recombination protein RecA [Nitratiruptor sp. SB155-2]
          Length = 344

 Score =  361 bits (927), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 211/344 (61%), Positives = 275/344 (79%), Gaps = 3/344 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL+ A+ QI + +GKGA+++LG +    E IE +S+GSLGLD+ALGIGG PKGRI
Sbjct: 3   TNKQKALDLAIKQIDKAFGKGALVKLGDKQ--IEPIESISTGSLGLDLALGIGGVPKGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL  IA++QK GG  AF+DAEHALD +YA+ LGVD+ NLL+SQPD 
Sbjct: 61  VEIYGPESSGKTTLALQIIAEAQKKGGVAAFIDAEHALDVLYAKNLGVDIDNLLVSQPDF 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQAL+I + + RSGAVD+IVIDSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT  
Sbjct: 121 GEQALDIVETIARSGAVDVIVIDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLTGV 180

Query: 190 ISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           + +    ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVR+D+RR+ ++K  +S  GN
Sbjct: 181 VHKMDTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRVDVRRIATLKQGESQIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + R KVVKNK+A PF+Q EFDIM+GEGIS  GELID GVK  I+DKSG+WFS+K  +LGQ
Sbjct: 241 RVRAKVVKNKVAPPFRQAEFDIMFGEGISKEGELIDYGVKMDIIDKSGSWFSYKDIKLGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GREN+K +L+E+ E+A+ IE+ +R+  G+    ++      +++
Sbjct: 301 GRENAKAYLKEHPEVAQEIENEIRRAMGMDDSVMMVPENEMSEE 344


>gi|44981|emb|CAA35247.1| RecA protein [Neisseria gonorrhoeae]
          Length = 348

 Score =  361 bits (927), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 220/351 (62%), Positives = 281/351 (80%), Gaps = 6/351 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKSKAL AAL+QI++ +GKGAIM++       E +EV+S+GSLGLD+ALG+GG  +GRIV
Sbjct: 4   DKSKALAAALAQIEKSFGKGAIMKM-DGSQQEENLEVISTGSLGLDLALGVGGLRRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  +AQ QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDTG
Sbjct: 63  EIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG +D++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  I
Sbjct: 123 EQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGHI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR GSIK  + + GN+T
Sbjct: 183 KKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+GVK  I++KSGAW+S+ G ++GQG+
Sbjct: 243 RVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           +N +++L+EN EI++ I++ +R   G+            T+D+ D +  + 
Sbjct: 303 DNVRVWLKENPEISDEIDAKIRALNGV-----EMHITEGTQDETDGERPEE 348


>gi|157284487|gb|ABV31091.1| RecA [Vibrio cholerae O1]
 gi|157284495|gb|ABV31095.1| RecA [Vibrio cholerae O1]
 gi|157284499|gb|ABV31097.1| RecA [Vibrio cholerae O1]
          Length = 337

 Score =  361 bits (927), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 202/335 (60%), Positives = 266/335 (79%), Gaps = 2/335 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
            QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGK
Sbjct: 1   GQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGK 58

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L
Sbjct: 59  TTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDAL 118

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FI
Sbjct: 119 ARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFI 178

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A
Sbjct: 179 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIA 238

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
           +PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+ N+  +L+EN
Sbjct: 239 APFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKEN 298

Query: 321 IEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            EIA+ ++  LR+      +  L     +  DD +
Sbjct: 299 PEIAKTLDKKLREMLLNPENMQLIAETSSAADDVE 333


>gi|291458041|ref|ZP_06597431.1| protein RecA [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419373|gb|EFE93092.1| protein RecA [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 372

 Score =  361 bits (926), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 203/332 (61%), Positives = 266/332 (80%), Gaps = 2/332 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+ AL++I++ +GKG++M+LG    + + IE V +G+L LDIALG GGFP+GRI+
Sbjct: 21  EKLKALDVALTKIEKDFGKGSVMKLGE-SRVNKDIETVPTGALSLDIALGAGGFPRGRII 79

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH +A+ QK GG   FVDAEHALD  YA+++GVD+ NL ISQPD+G
Sbjct: 80  EIYGPESSGKTTLALHAVAEVQKRGGIAGFVDAEHALDPRYAKEIGVDIDNLYISQPDSG 139

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + ++RSGA+DI+V+DSVAAL P+AEI+G+MG+S  G+QARLMSQALRKLTS I
Sbjct: 140 EQALEIAETMIRSGAIDILVVDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLTSII 199

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSITGNQ 249
           SRS  IL+FINQ+R K+GVMFGSPETTTGG ALKFY+++R+DIR+   IK      +GN+
Sbjct: 200 SRSNAILIFINQLREKVGVMFGSPETTTGGRALKFYATIRIDIRKGEPIKSASGEPSGNR 259

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PFKQ EFDI +G GIS  G+++DL V   IVDKSGAWF+++G+++GQG
Sbjct: 260 VKVKVVKNKIAPPFKQCEFDISFGSGISREGDVLDLAVNEDIVDKSGAWFAYEGEKIGQG 319

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           REN+K +L++N  +   IE  +R+  GL  D 
Sbjct: 320 RENAKEYLKKNPRVMAEIEGKVREKFGLKPDP 351


>gi|224551693|gb|ACN54246.1| RecA [Burkholderia cenocepacia]
          Length = 319

 Score =  361 bits (926), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 220/316 (69%), Positives = 273/316 (86%), Gaps = 1/316 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L
Sbjct: 5   QFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTL 63

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+
Sbjct: 64  QVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGS 123

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RM
Sbjct: 124 IDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRM 183

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++
Sbjct: 184 KIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRE 243

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
             FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA 
Sbjct: 244 AIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAR 303

Query: 326 NIESLLRQNAGLVADS 341
            IE+ +R++ G+V+  
Sbjct: 304 EIENRIRESLGVVSSP 319


>gi|302380676|ref|ZP_07269141.1| RecA protein [Finegoldia magna ACS-171-V-Col3]
 gi|303233666|ref|ZP_07320320.1| RecA protein [Finegoldia magna BVS033A4]
 gi|302311619|gb|EFK93635.1| RecA protein [Finegoldia magna ACS-171-V-Col3]
 gi|302495100|gb|EFL54852.1| RecA protein [Finegoldia magna BVS033A4]
          Length = 361

 Score =  361 bits (926), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 211/357 (59%), Positives = 273/357 (76%), Gaps = 5/357 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD+    N  +K +AL  A + I++ +GKG+IM+LG    + + IE + +G++ LD+ALG
Sbjct: 1   MDFS---NGTEKDQALREAFASIEKQFGKGSIMKLGDH--VQKDIEAIPTGAINLDVALG 55

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG P+GR++EIYGPESSGKTTLALH +A++QK GGT AF+DAEHALD+IYA+ LGVD  
Sbjct: 56  IGGLPRGRVIEIYGPESSGKTTLALHVVAEAQKMGGTAAFIDAEHALDAIYAKNLGVDTD 115

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL+ISQPDTGEQAL I D LVRS AVDII+IDSVAAL PRAEIEG+MG+S  G+QARLMS
Sbjct: 116 NLIISQPDTGEQALGICDSLVRSSAVDIIIIDSVAALVPRAEIEGNMGDSHVGLQARLMS 175

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT  IS+S C ++FINQ+R K+G+MFG+PE TTGG ALKFYSSVR++IRR  +I+
Sbjct: 176 QALRKLTGVISKSNCTVIFINQLREKVGIMFGNPEVTTGGRALKFYSSVRIEIRRGEAIR 235

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             D I GN+T+VK+VKNK+A PFKQVEFDIMYGEGIS  G ++DL     ++ K+GAW+S
Sbjct: 236 KGDDIVGNRTKVKIVKNKVAPPFKQVEFDIMYGEGISKIGTILDLATDCKVIKKAGAWYS 295

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           ++ ++LGQGRENSK+FL EN +I E I     +  GL +     +      D  D++
Sbjct: 296 YEEEKLGQGRENSKVFLEENPKILEEIIDKTYEFYGLKSKDSSDDTETEIIDQIDEE 352


>gi|191637814|ref|YP_001986980.1| Protein recA (Recombinase A) [Lactobacillus casei BL23]
 gi|190712116|emb|CAQ66122.1| Protein recA (Recombinase A) [Lactobacillus casei BL23]
 gi|327381880|gb|AEA53356.1| Protein recA [Lactobacillus casei LC2W]
 gi|327385042|gb|AEA56516.1| Protein recA [Lactobacillus casei BD-II]
          Length = 353

 Score =  361 bits (926), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 194/345 (56%), Positives = 268/345 (77%), Gaps = 2/345 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   ++ KAL+ AL +I++ +GKGAIM++G++      + VVSSGSL +D ALG+GGFP+
Sbjct: 1   MAGDERQKALDVALKKIEKNFGKGAIMRMGAKADTR--VSVVSSGSLAVDDALGVGGFPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGV++  LL+SQ
Sbjct: 59  GRIVEIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQ LEI D LV SGA+DI+VIDSVAAL PRAEIEGDMG++  G+QARLMSQALRKL
Sbjct: 119 PDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + SI+++K I +FINQ+R K+G++FGSPETT GG ALKFY++VRL+IRR   IK    + 
Sbjct: 179 SGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+T++KVVKNK+A PF+    DIMYG+GIS  GEL+D+ V+  IV+K+G+W++++G+R+
Sbjct: 239 GNRTKIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKAGSWYAYQGERI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           GQGREN+K +L  + ++ + I+  +R   G+ A    +  +++  
Sbjct: 299 GQGRENAKTYLDNHADLQQTIKQQVRVAYGMAAAPGRETASVSED 343


>gi|225017549|ref|ZP_03706741.1| hypothetical protein CLOSTMETH_01476 [Clostridium methylpentosum
           DSM 5476]
 gi|224949699|gb|EEG30908.1| hypothetical protein CLOSTMETH_01476 [Clostridium methylpentosum
           DSM 5476]
          Length = 392

 Score =  361 bits (926), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 200/326 (61%), Positives = 266/326 (81%), Gaps = 2/326 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + DK KALE AL+QI++ +G+GA+M+LG   ++   +E +S+GS+G+DIALGIGG P+GR
Sbjct: 18  LSDKKKALETALAQIEKQFGQGAVMKLGQATAM--NVEAISTGSIGMDIALGIGGVPRGR 75

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEIYGPESSGKTT+AL  +AQ+QK GG  AF+D EHALD +YA+ LGVD+ +LL+SQP+
Sbjct: 76  IVEIYGPESSGKTTVALSIVAQAQKAGGEAAFIDVEHALDPVYAKALGVDIDSLLVSQPN 135

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           +GEQALEI + LVRSGA+D+IVIDSVAA+T +AEIEG+MG++  G+QARLMSQA+RKLT 
Sbjct: 136 SGEQALEIAEALVRSGAIDVIVIDSVAAMTTKAEIEGEMGDTHVGLQARLMSQAMRKLTG 195

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            I ++ C+ +FINQ+R KIGVM+G+PETT GG ALKFYSSVR++IRR   IK+   + GN
Sbjct: 196 IIGKTNCVALFINQVREKIGVMYGNPETTPGGRALKFYSSVRMEIRRSEQIKNGSEVIGN 255

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TR KVVKNK+A PFK+ EFDIMYGEGIS  GE++DL     IV++SGAW+++ G+RLGQ
Sbjct: 256 RTRCKVVKNKVAPPFKEAEFDIMYGEGISQTGEILDLATNLDIVNRSGAWYNYNGERLGQ 315

Query: 309 GRENSKIFLRENIEIAENIESLLRQN 334
           GR+N+K +L EN E+ E +  L+ +N
Sbjct: 316 GRDNAKAYLAENPELCEELRKLVMEN 341


>gi|224551689|gb|ACN54244.1| RecA [Burkholderia sp. MDII-137p]
          Length = 319

 Score =  361 bits (926), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 221/314 (70%), Positives = 273/314 (86%), Gaps = 1/314 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L
Sbjct: 3   QFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTL 61

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+
Sbjct: 62  QVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGS 121

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RM
Sbjct: 122 VDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRM 181

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++
Sbjct: 182 KIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRE 241

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
             FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA 
Sbjct: 242 AIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAR 301

Query: 326 NIESLLRQNAGLVA 339
            IE+ +R++ G+V+
Sbjct: 302 EIENRIRESLGVVS 315


>gi|76363328|sp|Q6KCK0|RECA_ENTGA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|47678130|emb|CAF21828.1| RecA recombinase [Enterococcus gallinarum]
          Length = 348

 Score =  361 bits (926), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 202/342 (59%), Positives = 270/342 (78%), Gaps = 2/342 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  AL+AAL +I++ YGKGAIM+LG +  + + I  + SGSL LD+ALG+GG+P+GRIV
Sbjct: 4   DRKAALDAALKKIEKNYGKGAIMKLGEK--VDQQISTIPSGSLALDVALGVGGYPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD  YA+KLGV++ +LL+SQPDTG
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKGGGTAAFIDAEHALDPQYAQKLGVNIDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGAVDI+VIDSVAAL PRAEI+G+MG++  G+QARLMSQALRKL+ SI
Sbjct: 122 EQGLEIADALVSSGAVDIVVIDSVAALVPRAEIDGEMGDTHVGLQARLMSQALRKLSGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K I +FINQ+R K+G+MFG+PETT GG ALKFYS++RL++RR   +K    I GN+T
Sbjct: 182 NKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEQLKSGTDIIGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E D+MYG+GIS  GEL+D+ V+  IVDKSGAW+++KG R+GQGR
Sbjct: 242 KIKVVKNKVAPPFKVAEVDMMYGQGISQEGELLDMAVEQDIVDKSGAWYAYKGDRIGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           EN+K ++RE+ E+   + + +R   G+     + E     ++
Sbjct: 302 ENAKNYMREHQEMMMEVSARVRDAYGIGTGETVIEIEDAQEE 343


>gi|224551687|gb|ACN54243.1| RecA [Burkholderia sp. MDII-104r]
          Length = 320

 Score =  361 bits (926), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 221/314 (70%), Positives = 273/314 (86%), Gaps = 1/314 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L
Sbjct: 5   QFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTL 63

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+
Sbjct: 64  QVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGS 123

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RM
Sbjct: 124 VDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRM 183

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++
Sbjct: 184 KIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRE 243

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
             FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA 
Sbjct: 244 AIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAR 303

Query: 326 NIESLLRQNAGLVA 339
            IE+ +R++ G+V+
Sbjct: 304 EIENRIRESLGVVS 317


>gi|219848651|ref|YP_002463084.1| recombinase A [Chloroflexus aggregans DSM 9485]
 gi|254790427|sp|B8GAQ9|RECA_CHLAD RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|219542910|gb|ACL24648.1| recA protein [Chloroflexus aggregans DSM 9485]
          Length = 351

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 207/349 (59%), Positives = 266/349 (76%), Gaps = 1/349 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +K KAL AA++QI R +GKG+IM++G  G     IE + +GS+ LDIALGIGG P+GR
Sbjct: 4   TPEKEKALAAAMAQIDRKFGKGSIMKMGEVGGRL-AIEAIPTGSIALDIALGIGGVPRGR 62

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EI+GPESSGKTTLA H IA++QK GG  AF+DAEHA D +YA + GV++ +LL+SQPD
Sbjct: 63  VIEIFGPESSGKTTLAQHIIAEAQKMGGVGAFIDAEHAFDPVYAARCGVNISDLLVSQPD 122

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI +MLVRS AVD+IVIDSVAAL PRAEIEGDMG+S+PGMQARLMSQALRKL+ 
Sbjct: 123 TGEQALEICEMLVRSNAVDVIVIDSVAALVPRAEIEGDMGDSMPGMQARLMSQALRKLSG 182

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +IS+S+ +++FINQ+RMKIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++K      G+
Sbjct: 183 AISKSRAVVIFINQLRMKIGVMFGSPETTTGGQALKFYASVRLDIRRIETLKQGQEAIGS 242

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + RVKV+KNK+A PF+Q EFDI+  EGIS  G +ID+G +  I+ KSGAWF     RLGQ
Sbjct: 243 RVRVKVIKNKVAPPFRQAEFDILANEGISREGNIIDIGTELGIIRKSGAWFYLGEDRLGQ 302

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           GREN + FL+ N  + + IE L++  A     ++     I   D   ++
Sbjct: 303 GRENVREFLKNNPALTDEIERLIKAQALTNPSAIAPSADIGDDDGVFEE 351


>gi|157284485|gb|ABV31090.1| RecA [Vibrio cholerae O1]
          Length = 337

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 199/335 (59%), Positives = 263/335 (78%), Gaps = 2/335 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
            QI++ +GKG+IM+LG   ++   +E +S+GSL LDIA G GG P GRIVEI+GPESSGK
Sbjct: 1   GQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIAWGAGGLPMGRIVEIFGPESSGK 58

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L
Sbjct: 59  TTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDAL 118

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FI
Sbjct: 119 ARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFI 178

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A
Sbjct: 179 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIA 238

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
           +PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+ N+  +L+E+
Sbjct: 239 APFKEAHTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKEH 298

Query: 321 IEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            EIA  ++  LR       +  L     +  +D +
Sbjct: 299 PEIANTLDKKLRDMLLHPENMQLTGETASAANDVE 333


>gi|70904868|gb|AAZ14013.1| RecA [Burkholderia multivorans]
          Length = 317

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 220/314 (70%), Positives = 273/314 (86%), Gaps = 1/314 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L
Sbjct: 4   QFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTL 62

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVRSG+
Sbjct: 63  QVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRSGS 122

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RM
Sbjct: 123 IDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRM 182

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++
Sbjct: 183 KIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRE 242

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
             FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA 
Sbjct: 243 AIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAR 302

Query: 326 NIESLLRQNAGLVA 339
            IE+ +R++ G+ A
Sbjct: 303 EIENRIRESLGVAA 316


>gi|21231175|ref|NP_637092.1| recombinase A [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66768817|ref|YP_243579.1| recombinase A [Xanthomonas campestris pv. campestris str. 8004]
 gi|188991932|ref|YP_001903942.1| recombinase A [Xanthomonas campestris pv. campestris str. B100]
 gi|2500097|sp|Q60101|RECA_XANCP RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|76363348|sp|Q4UTR4|RECA_XANC8 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|229470328|sp|B0RTY3|RECA_XANCB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|15150333|gb|AAK85398.1|AF399933_2 RecA [Xanthomonas campestris]
 gi|1322036|gb|AAC44078.1| RecA [Xanthomonas campestris pv. campestris]
 gi|21112815|gb|AAM41016.1| RecA protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66574149|gb|AAY49559.1| RecA protein [Xanthomonas campestris pv. campestris str. 8004]
 gi|167733692|emb|CAP51897.1| RecA protein [Xanthomonas campestris pv. campestris]
          Length = 343

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 218/327 (66%), Positives = 275/327 (84%), Gaps = 4/327 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AALSQI++ +GKG++M++G    + E +EV+ +GSL LDIALGIGG PKGR+V
Sbjct: 4   NKKRALSAALSQIEKQFGKGSVMRMGD--RVIEAVEVIPTGSLMLDIALGIGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAECQKLGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS +VDI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSSSVDIVVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  ++VFINQ+RMKIGVM    SPE TTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 182 KRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELID+GV+A +VDK+GAW+S+  +R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQVITEILYGEGISREGELIDMGVEAKLVDKAGAWYSYGDERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNA 335
           G++N++ +LR+N ++A  +E+ LR+  
Sbjct: 302 GKDNARGYLRDNPQVAIKLEAELREKF 328


>gi|229018975|ref|ZP_04175817.1| hypothetical protein bcere0030_34890 [Bacillus cereus AH1273]
 gi|229025220|ref|ZP_04181642.1| hypothetical protein bcere0029_35220 [Bacillus cereus AH1272]
 gi|228736048|gb|EEL86621.1| hypothetical protein bcere0029_35220 [Bacillus cereus AH1272]
 gi|228742303|gb|EEL92461.1| hypothetical protein bcere0030_34890 [Bacillus cereus AH1273]
          Length = 343

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 209/345 (60%), Positives = 273/345 (79%), Gaps = 2/345 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG Q      I  +SSGSL LD+ALG+GG+P+GR
Sbjct: 1   MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERR--ISTISSGSLALDVALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPD
Sbjct: 59  IIEIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   +K  + I GN
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T+VKVVKNK+A PF+  E DIMYGEGIS  GE++D+  +  IV KSGAW+S+  +RLGQ
Sbjct: 239 KTKVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           GRENSK FL+EN ++ E I   +R++ G+  DS +++   +T  D
Sbjct: 299 GRENSKQFLKENTDLREEIAFFVREHHGIGEDSGVEDTEDSTLQD 343


>gi|83746096|ref|ZP_00943151.1| RecA protein [Ralstonia solanacearum UW551]
 gi|207728006|ref|YP_002256400.1| recombinase A [Ralstonia solanacearum MolK2]
 gi|207742407|ref|YP_002258799.1| protein reca (recombinase a) [Ralstonia solanacearum IPO1609]
 gi|83727279|gb|EAP74402.1| RecA protein [Ralstonia solanacearum UW551]
 gi|206591250|emb|CAQ56862.1| protein reca (recombinase a) [Ralstonia solanacearum MolK2]
 gi|206593797|emb|CAQ60724.1| protein reca (recombinase a) [Ralstonia solanacearum IPO1609]
          Length = 352

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 216/330 (65%), Positives = 276/330 (83%), Gaps = 2/330 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G   +  E ++VVS+GSLGLD+ALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 25  IEKQFGKGSIMKMGD--AEVEPVQVVSTGSLGLDVALGVGGLPRGRVVEIYGPESSGKTT 82

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +A+ QK GGTCAF+DAEHALD  YA KLGV + +LLISQPDTGEQALEI D LVR
Sbjct: 83  LTLQVVAEMQKLGGTCAFIDAEHALDVTYADKLGVKVPDLLISQPDTGEQALEIADALVR 142

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG+VD+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 143 SGSVDLIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 202

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T+VKVVKNK+A P
Sbjct: 203 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKRGDEVVGNETKVKVVKNKVAPP 262

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YG G+S  GE+IDLGV+A +V+KSGAW+S+ G+R+GQGR+N + FLREN E
Sbjct: 263 FREAIFDILYGAGVSREGEIIDLGVEAKVVEKSGAWYSYNGERIGQGRDNCREFLRENPE 322

Query: 323 IAENIESLLRQNAGLVADSLLQEPAINTKD 352
           +A  IE+ +R++ G+V    +       +D
Sbjct: 323 LAREIENKVREHLGVVPMGAVVLAEEVEED 352


>gi|297588433|ref|ZP_06947076.1| recombination protein A [Finegoldia magna ATCC 53516]
 gi|297573806|gb|EFH92527.1| recombination protein A [Finegoldia magna ATCC 53516]
          Length = 363

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 214/366 (58%), Positives = 282/366 (77%), Gaps = 9/366 (2%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD+    N  +K +AL  A + I++ +GKG+IM+LG    + + IE + +G++ LD+ALG
Sbjct: 1   MDF---ANGSEKDQALREAFASIEKQFGKGSIMKLGDH--VQKDIEAIPTGAINLDVALG 55

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG P+GR++EIYGPESSGKTTLALH +A++QK GGT AF+DAEHALD+IYA+ LGVD  
Sbjct: 56  IGGLPRGRVIEIYGPESSGKTTLALHVVAEAQKMGGTAAFIDAEHALDAIYAKNLGVDTD 115

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL+ISQPDTGEQAL I D LVRS AVDII+IDSVAAL PRAEIEG+MG+S  G+QARLMS
Sbjct: 116 NLIISQPDTGEQALGICDSLVRSSAVDIIIIDSVAALVPRAEIEGNMGDSHVGLQARLMS 175

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT  IS+S C ++FINQ+R K+G+MFG+PE TTGG ALKFYSSVR++IRR  +I+
Sbjct: 176 QALRKLTGVISKSNCTVIFINQLREKVGIMFGNPEVTTGGRALKFYSSVRIEIRRGEAIR 235

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             D I GN+T+VK+VKNK+A PFKQVEFDIMYGEGIS  G ++DL     +V K+GAW+S
Sbjct: 236 KGDDIVGNRTKVKIVKNKVAPPFKQVEFDIMYGEGISKIGTILDLATDCKVVKKAGAWYS 295

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL----VADSLLQEPAINTKDDADK 356
           ++ ++LGQGRENSK+FL EN +I E I     +  GL     ++++  E   N KD+++ 
Sbjct: 296 YEEEKLGQGRENSKLFLEENPKILEEIIDKTYEFYGLRSKEDSEAIKTENNDNIKDESNN 355

Query: 357 DDTDNV 362
           + +++ 
Sbjct: 356 EISEDE 361


>gi|169824454|ref|YP_001692065.1| recombinase A [Finegoldia magna ATCC 29328]
 gi|167831259|dbj|BAG08175.1| recombinase A [Finegoldia magna ATCC 29328]
          Length = 361

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 211/357 (59%), Positives = 272/357 (76%), Gaps = 5/357 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD+    N  +K +AL  A + I++ +GKG+IM+LG    + + IE + +G++ LD+ALG
Sbjct: 1   MDFS---NGTEKDQALREAFASIEKQFGKGSIMKLGDH--VQKDIEAIPTGAINLDVALG 55

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG P+GR++EIYGPESSGKTTLALH +A++QK GGT AF+DAEHALD+IYA+ LGVD  
Sbjct: 56  IGGLPRGRVIEIYGPESSGKTTLALHVVAEAQKMGGTAAFIDAEHALDAIYAKNLGVDTD 115

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL+ISQPDTGEQAL I D LVRS AVDII+IDSVAAL PRAEIEG+MG+S  G+QARLMS
Sbjct: 116 NLIISQPDTGEQALGICDSLVRSSAVDIIIIDSVAALVPRAEIEGNMGDSHVGLQARLMS 175

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT  IS+S C ++FINQ+R K+G+MFG+PE TTGG ALKFYSSVR++IRR  +I+
Sbjct: 176 QALRKLTGVISKSNCTVIFINQLREKVGIMFGNPEVTTGGRALKFYSSVRIEIRRGEAIR 235

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             D I GN+T+VK+VKNK+A PFKQVEFDIMYGEGIS  G ++DL     ++ K+GAW+S
Sbjct: 236 KGDDIVGNRTKVKIVKNKVAPPFKQVEFDIMYGEGISKIGTILDLATDCKVIKKAGAWYS 295

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           ++ ++LGQGRENSK+FL EN +I E I     +  GL +     +      D  D +
Sbjct: 296 YEEEKLGQGRENSKVFLEENPKILEEIIDKTYEFYGLKSKDSSDDTETEIIDQIDDE 352


>gi|124514183|gb|EAY55698.1| RecA protein [Leptospirillum rubarum]
          Length = 360

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 206/323 (63%), Positives = 267/323 (82%), Gaps = 1/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + K+L+ A+SQI++ +GKG+IM+LG +  + + + V+ SGSL LDIALGIGG+P+GR+VE
Sbjct: 9   RQKSLDLAVSQIEKQFGKGSIMRLG-KDQVPQNVPVIPSGSLALDIALGIGGYPRGRVVE 67

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTLALH I++  K GG  AF+DAEHALD  YA++LGV  ++LLI+QPDTGE
Sbjct: 68  LYGPESSGKTTLALHAISEVHKAGGVAAFIDAEHALDVTYAKRLGVRTEDLLIAQPDTGE 127

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEIT+ LVRSG++D+IV+DSVAAL PRAE+EG+MG++  G+QARLMSQALRKLTS+IS
Sbjct: 128 QALEITETLVRSGSIDLIVVDSVAALVPRAELEGEMGDAHVGLQARLMSQALRKLTSAIS 187

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S   ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIRR+ SIK+ D + GN+ R
Sbjct: 188 KSNTTVLFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRRIESIKEGDQVLGNRIR 247

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNKMA PF+Q EFDI + EGIS  GELIDLGV   I++KSGAW+S   +RLGQG+E
Sbjct: 248 VKVVKNKMAPPFRQAEFDISFNEGISTVGELIDLGVDHGILEKSGAWYSIGNERLGQGKE 307

Query: 312 NSKIFLRENIEIAENIESLLRQN 334
             K++L+ + E  + IE  +R  
Sbjct: 308 AVKLYLKTHPEAFKKIEQEIRSK 330


>gi|193806432|sp|P0C7T0|RECA_LEPME RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|1049197|gb|AAC43586.1| RecA [Leptospira biflexa]
 gi|1586560|prf||2204257A recA gene
          Length = 387

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 211/351 (60%), Positives = 273/351 (77%), Gaps = 4/351 (1%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           D  +E     + +A++AAL QI++ +GKG+IM+LG+   + E + VVS+GSL LDIALGI
Sbjct: 7   DKAQEKETDQRKQAIDAALGQIEKQFGKGSIMRLGADTRMAE-MNVVSTGSLDLDIALGI 65

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GGFP GRIVEIYGPESSGKTTL L  IA++QK GG  AF+DAEHALD  YA+KLGV++ +
Sbjct: 66  GGFPSGRIVEIYGPESSGKTTLTLSAIAETQKKGGIAAFIDAEHALDPSYAKKLGVNVDD 125

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL++QPD GE+ALEI + LVRS A+D+IVIDSVAAL P+AEIEGDMG+S  G+QARLMSQ
Sbjct: 126 LLVAQPDNGEEALEICESLVRSNAIDLIVIDSVAALVPKAEIEGDMGDSHMGLQARLMSQ 185

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT +IS+S   ++FINQ+RMKIGVMFGSPETTTGGNALKFY+S+RLDIRR+ ++K+
Sbjct: 186 ALRKLTGTISKSNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASIRLDIRRIETLKE 245

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
           K+   GN+ RVKVVKNK A PF+Q EFDIMY  GI+    LIDL V+  +V K+G+W+S+
Sbjct: 246 KEEPVGNRVRVKVVKNKCAPPFRQAEFDIMYANGINRESSLIDLAVRHDLVAKAGSWYSY 305

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
            G+++GQG+E  K F  EN +IA  IE+ +R    L    L+ +  I T++
Sbjct: 306 GGEKIGQGKEQVKNFFLENPDIAFKIENQVRDLNSL---PLMDQSKIQTRE 353


>gi|224551711|gb|ACN54255.1| RecA [Burkholderia sp. MVC2-55]
          Length = 317

 Score =  361 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 220/314 (70%), Positives = 273/314 (86%), Gaps = 1/314 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L
Sbjct: 3   QFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTL 61

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+
Sbjct: 62  QVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGS 121

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RM
Sbjct: 122 IDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRM 181

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++
Sbjct: 182 KIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRE 241

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
             FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA 
Sbjct: 242 AIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAR 301

Query: 326 NIESLLRQNAGLVA 339
            IE+ +R++ G+V+
Sbjct: 302 EIENRIRESLGVVS 315


>gi|157284493|gb|ABV31094.1| RecA [Vibrio cholerae O1]
          Length = 337

 Score =  361 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 202/334 (60%), Positives = 265/334 (79%), Gaps = 2/334 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
            QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGK
Sbjct: 1   GQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGK 58

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L
Sbjct: 59  TTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDAL 118

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FI
Sbjct: 119 ARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFI 178

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A
Sbjct: 179 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIA 238

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
           +PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+ N+  +L+EN
Sbjct: 239 APFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKEN 298

Query: 321 IEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
            EIA+ ++  LR+      +  L     +  DD 
Sbjct: 299 PEIAKTLDKKLREMLLNPENMQLIAETSSAADDV 332


>gi|162769939|emb|CAP58285.1| DNA recombinase [Burkholderia contaminans]
          Length = 324

 Score =  361 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 223/330 (67%), Positives = 278/330 (84%), Gaps = 6/330 (1%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L
Sbjct: 1   QFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTL 59

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+
Sbjct: 60  QVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGS 119

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RM
Sbjct: 120 IDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRM 179

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++
Sbjct: 180 KIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRE 239

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
             FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA 
Sbjct: 240 AIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAR 299

Query: 326 NIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            IE+ +R++ G+V       P    +D+A+
Sbjct: 300 EIENRIRESLGVVT-----MPDGAAQDEAE 324


>gi|119946986|ref|YP_944666.1| recombination protein RecA [Psychromonas ingrahamii 37]
 gi|119865590|gb|ABM05067.1| RecA protein [Psychromonas ingrahamii 37]
          Length = 358

 Score =  361 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 219/353 (62%), Positives = 280/353 (79%), Gaps = 1/353 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   +  E I+ VS+GSL LD+ALGIGG P GR V
Sbjct: 6   NKDKALAAALGQIEKQFGKGSIMRLGDDAASME-IDSVSTGSLSLDVALGIGGLPYGRCV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL L  IA++QK G TCAF+DAEHALD  YA+KLGVD+ NLLISQPDTG
Sbjct: 65  EVYGPESSGKTTLTLQVIAEAQKQGKTCAFIDAEHALDPTYAKKLGVDVDNLLISQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGAV ++V+DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT +I
Sbjct: 125 EQALEICDMLVRSGAVGVVVVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTGNI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ + I GN+T
Sbjct: 185 KQTNTMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKNGEEIIGNET 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF I+YG+GI+ FGEL+DLGVK   V+K+G+W+S+ G ++GQG+
Sbjct: 245 RVKVVKNKVAPPFKQAEFQILYGKGINHFGELVDLGVKQEFVEKAGSWYSYNGAKIGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N+  +L++N   AE +E+ +R+     A+ +  +  I  K   +       E
Sbjct: 305 SNASQYLKDNPASAEELEAKIREALMPKAEVIEDKKIIAEKKVTEDKKVTASE 357


>gi|224551703|gb|ACN54251.1| RecA [Burkholderia cenocepacia]
          Length = 319

 Score =  361 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 220/314 (70%), Positives = 273/314 (86%), Gaps = 1/314 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L
Sbjct: 5   QFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTL 63

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+
Sbjct: 64  QVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGS 123

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RM
Sbjct: 124 IDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRM 183

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++
Sbjct: 184 KIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRE 243

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
             FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA 
Sbjct: 244 AIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAR 303

Query: 326 NIESLLRQNAGLVA 339
            IE+ +R++ G+V+
Sbjct: 304 EIENRIRESLGVVS 317


>gi|118581580|ref|YP_902830.1| recombinase A [Pelobacter propionicus DSM 2379]
 gi|118504290|gb|ABL00773.1| recA protein [Pelobacter propionicus DSM 2379]
          Length = 340

 Score =  361 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 209/326 (64%), Positives = 272/326 (83%), Gaps = 1/326 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           + +  +K++A++ ALSQI++ +GKGA+M+LG       G+E +S+GS+ LD+ALG+GG P
Sbjct: 4   KTSSPEKNRAIDLALSQIEKQFGKGAVMRLG-NDEALPGVEAISTGSISLDMALGVGGVP 62

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRIVEIYGPESSGKTTLALH +A++ K GG  AFVDAEHALD  YARKLGV   +LL+S
Sbjct: 63  RGRIVEIYGPESSGKTTLALHIVAEAMKQGGIAAFVDAEHALDIGYARKLGVKTDDLLVS 122

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEI + LVRSGA+D++VIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRK
Sbjct: 123 QPDTGEQALEIAETLVRSGAIDVLVIDSVAALVPKAEIEGDMGDSHMGLQARLMSQALRK 182

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT  IS+S C ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIR++ ++K  D++
Sbjct: 183 LTGIISKSNCCVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRKIATLKQGDAV 242

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            G++T+VKVVKNK+A PF++VEFDI+YGEGIS  G+++DL V   IV+KSGAW+S+  +R
Sbjct: 243 IGSRTKVKVVKNKVAPPFREVEFDILYGEGISRTGDVLDLAVDKGIVEKSGAWYSYGKER 302

Query: 306 LGQGRENSKIFLRENIEIAENIESLL 331
           +GQGRENS+ FL E+ E+  +IE  L
Sbjct: 303 IGQGRENSRTFLTEHPEVLADIEGKL 328


>gi|224551691|gb|ACN54245.1| RecA [Burkholderia sp. MDIII-B238]
          Length = 318

 Score =  361 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 220/314 (70%), Positives = 273/314 (86%), Gaps = 1/314 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L
Sbjct: 3   QFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTL 61

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+
Sbjct: 62  QVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGS 121

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RM
Sbjct: 122 IDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRM 181

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++
Sbjct: 182 KIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRE 241

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
             FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA 
Sbjct: 242 AIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAR 301

Query: 326 NIESLLRQNAGLVA 339
            IE+ +R++ G+V+
Sbjct: 302 EIENRIRESLGVVS 315


>gi|224551683|gb|ACN54241.1| RecA [Burkholderia cenocepacia]
 gi|224551685|gb|ACN54242.1| RecA [Burkholderia cenocepacia]
 gi|224551709|gb|ACN54254.1| RecA [Burkholderia cenocepacia]
          Length = 318

 Score =  361 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 220/314 (70%), Positives = 273/314 (86%), Gaps = 1/314 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L
Sbjct: 4   QFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTL 62

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+
Sbjct: 63  QVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGS 122

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RM
Sbjct: 123 IDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRM 182

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++
Sbjct: 183 KIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRE 242

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
             FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA 
Sbjct: 243 AIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAR 302

Query: 326 NIESLLRQNAGLVA 339
            IE+ +R++ G+V+
Sbjct: 303 EIENRIRESLGVVS 316


>gi|163941467|ref|YP_001646351.1| recombinase A [Bacillus weihenstephanensis KBAB4]
 gi|229012963|ref|ZP_04170128.1| hypothetical protein bmyco0001_34010 [Bacillus mycoides DSM 2048]
 gi|229134588|ref|ZP_04263398.1| hypothetical protein bcere0014_34970 [Bacillus cereus BDRD-ST196]
 gi|229168519|ref|ZP_04296242.1| hypothetical protein bcere0007_34760 [Bacillus cereus AH621]
 gi|229470326|sp|A9VS23|RECA_BACWK RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|163863664|gb|ABY44723.1| recA protein [Bacillus weihenstephanensis KBAB4]
 gi|228614925|gb|EEK72027.1| hypothetical protein bcere0007_34760 [Bacillus cereus AH621]
 gi|228648849|gb|EEL04874.1| hypothetical protein bcere0014_34970 [Bacillus cereus BDRD-ST196]
 gi|228748217|gb|EEL98077.1| hypothetical protein bmyco0001_34010 [Bacillus mycoides DSM 2048]
          Length = 343

 Score =  361 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 207/345 (60%), Positives = 274/345 (79%), Gaps = 2/345 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG Q      I  +SSGSL LD+ALG+GG+P+GR
Sbjct: 1   MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERR--ISTISSGSLALDVALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPD
Sbjct: 59  VIEIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   +K  + I GN
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T+VKVVKNK+A PF+  E DIMYGEGIS  GE++D+  +  IV KSGAW+S+  +RLGQ
Sbjct: 239 KTKVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           GRENSK FL+EN ++ E I   +R++ G+  +S +++   +T+ D
Sbjct: 299 GRENSKQFLKENTDLREEIAFFVREHHGIGENSGVEDTEDSTRQD 343


>gi|269469106|gb|EEZ80654.1| RecA/RadA recombinase [uncultured SUP05 cluster bacterium]
          Length = 335

 Score =  361 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 218/332 (65%), Positives = 276/332 (83%), Gaps = 1/332 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K +AL+AAL+QI + +GKG++M LG + +    IE VS+GSL LDIALGIGG P+GR+VE
Sbjct: 5   KKQALKAALAQIDKQFGKGSVMFLGDENA-HADIEAVSTGSLSLDIALGIGGLPRGRVVE 63

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA+ QK GGT AF+DAEHALD  YA++LGV+  +LLISQPDTGE
Sbjct: 64  IYGPESSGKTTLTLHVIAEMQKLGGTAAFIDAEHALDPQYAKRLGVNTDDLLISQPDTGE 123

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITDMLVRSG+VDI+VIDSVAALTP+AEIEG+MG S  G+QARLMSQALRKLTS+I 
Sbjct: 124 QALEITDMLVRSGSVDIVVIDSVAALTPKAEIEGEMGASHMGLQARLMSQALRKLTSNIK 183

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK  D I GN+TR
Sbjct: 184 KTNTMVIFINQLRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKKGDEILGNETR 243

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV+KNK+A PFKQ EF I+Y +GIS   E+IDLGVK   V+K+GAW+S +G+R+GQG++
Sbjct: 244 VKVLKNKVAPPFKQAEFQILYNQGISRESEIIDLGVKLGFVEKAGAWYSVEGERIGQGKD 303

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLL 343
           N++ +L E+ E+++ IE  +R+      DS+ 
Sbjct: 304 NARDYLIEHAELSQKIEGKIREKLMSDGDSVE 335


>gi|167645357|ref|YP_001683020.1| recombinase A [Caulobacter sp. K31]
 gi|189039593|sp|B0SZN2|RECA_CAUSK RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|167347787|gb|ABZ70522.1| recA protein [Caulobacter sp. K31]
          Length = 356

 Score =  361 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 235/347 (67%), Positives = 291/347 (83%), Gaps = 2/347 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
               DK +ALEAAL+QI R +GKG++M+LG +G +   +E +S+GSLGLDIALGIGG PK
Sbjct: 12  KEDGDKQRALEAALAQIDRAFGKGSVMKLGEKGKV--EMESISTGSLGLDIALGIGGLPK 69

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++EIYGPESSGKTTLALH +A+ QK GGT AFVDAEHALD  YA KLGV+L NLL+SQ
Sbjct: 70  GRVIEIYGPESSGKTTLALHVVAECQKAGGTAAFVDAEHALDPGYAFKLGVNLDNLLVSQ 129

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEITD LVRSGAVDI+VIDSVAALTP+AEIEG+MG+SLPG+QARLMSQALRKL
Sbjct: 130 PDNGEQALEITDTLVRSGAVDIVVIDSVAALTPKAEIEGEMGDSLPGLQARLMSQALRKL 189

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+SI+++  I++FINQ+R KIGVM+GSPETTTGGNALKFY+SVRLDIRR GSIK++D I 
Sbjct: 190 TASINKANTIVIFINQIRHKIGVMYGSPETTTGGNALKFYASVRLDIRRTGSIKNRDEIV 249

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN  RVKVVKNK+A PF++VEFDIMYGEGIS  GE+IDLGVKA I+DK+G+WFS+  QR+
Sbjct: 250 GNNVRVKVVKNKVAPPFREVEFDIMYGEGISKLGEIIDLGVKAGIIDKAGSWFSYNSQRI 309

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           GQGR+N + FL+ N ++A  IE+ +R+++  + + LL     +  D+
Sbjct: 310 GQGRDNVREFLKVNKDLAAEIEAAVRKSSQKIEEELLVGGPEDGDDE 356


>gi|224551697|gb|ACN54248.1| RecA [Burkholderia cenocepacia]
          Length = 317

 Score =  361 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 220/314 (70%), Positives = 273/314 (86%), Gaps = 1/314 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L
Sbjct: 4   QFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTL 62

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+
Sbjct: 63  QVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGS 122

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RM
Sbjct: 123 IDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRM 182

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++
Sbjct: 183 KIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRE 242

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
             FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA 
Sbjct: 243 AIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAR 302

Query: 326 NIESLLRQNAGLVA 339
            IE+ +R++ G+V+
Sbjct: 303 EIENRIRESLGVVS 316


>gi|146424975|emb|CAM12596.1| recombinase A [Ochrobactrum anthropi]
          Length = 299

 Score =  361 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 236/300 (78%), Positives = 273/300 (91%), Gaps = 1/300 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           +AALSQI+R +GKG+IM+LG    + E IE V +GSL LDIALG+GG PKGRIVEIYGPE
Sbjct: 1   DAALSQIERAFGKGSIMRLGKNAPVIE-IETVPTGSLSLDIALGVGGLPKGRIVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHTIA++Q  GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALHTIAEAQXKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS C+
Sbjct: 120 TDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCM 179

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQTRVKVVK
Sbjct: 180 VIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQTRVKVVK 239

Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316
           NK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QRLGQGREN+K +
Sbjct: 240 NKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQY 299


>gi|296803028|gb|ADH51590.1| DNA recombinase [Burkholderia contaminans]
 gi|296803034|gb|ADH51593.1| DNA recombinase [Burkholderia contaminans]
          Length = 311

 Score =  361 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 219/312 (70%), Positives = 271/312 (86%), Gaps = 1/312 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L
Sbjct: 1   QFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTL 59

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+
Sbjct: 60  QVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGS 119

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RM
Sbjct: 120 IDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRM 179

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++
Sbjct: 180 KIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRE 239

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
             FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA 
Sbjct: 240 AIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAR 299

Query: 326 NIESLLRQNAGL 337
            IE+ +R++ G+
Sbjct: 300 EIENRIRESLGV 311


>gi|182416662|ref|ZP_02948069.1| protein RecA [Clostridium butyricum 5521]
 gi|182379488|gb|EDT76977.1| protein RecA [Clostridium butyricum 5521]
          Length = 359

 Score =  361 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 211/352 (59%), Positives = 275/352 (78%), Gaps = 7/352 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KA+E+A+S I++ +GKG++M+LG        ++ +S+G L LDIALGIGG PKGRI
Sbjct: 6   AEKLKAIESAMSNIEKQFGKGSVMKLGDHN--VTTMDAISTGCLDLDIALGIGGVPKGRI 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+AL   A++QK GG   ++DAEHALD  YA+K+GVD+++L+ISQPDT
Sbjct: 64  IEIYGPESSGKTTVALSIAAEAQKKGGAVGYIDAEHALDPSYAQKIGVDVESLIISQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQ LEI + LVRSGA+D++V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL  +
Sbjct: 124 GEQCLEIAEALVRSGAIDVLVVDSVAALVPKAEIEGEMGDSHIGLQARLMSQALRKLAGT 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I+++ C+ +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLDIRR+ SIK  DSI GN+
Sbjct: 184 INKTNCVAIFINQLREKVGVMFGSPETTTGGRALKFYASVRLDIRRIDSIKQGDSIIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKV+KNK+A PF+Q EFDIMY EGIS  G ++D+GVK  IV KSGAWFS+   RLGQG
Sbjct: 244 TRVKVMKNKVAPPFRQAEFDIMYNEGISRTGNVLDVGVKEEIVQKSGAWFSYGDVRLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLL-----QEPAINTKDDADK 356
           RENSK++L++N ++A +IE+ +R    L            E A++T    DK
Sbjct: 304 RENSKVYLKDNPDVALDIENQIRAKYNLPLAEAAPAEAKSESAVDTAPKEDK 355


>gi|24214879|ref|NP_712360.1| recombinase A [Leptospira interrogans serovar Lai str. 56601]
 gi|45657611|ref|YP_001697.1| recombinase A [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|26454660|sp|P52277|RECA_LEPIN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|60392994|sp|P62217|RECA_LEPIC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|24195902|gb|AAN49378.1| recombinase A [Leptospira interrogans serovar Lai str. 56601]
 gi|45600851|gb|AAS70334.1| recombinase A [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 366

 Score =  361 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 209/326 (64%), Positives = 266/326 (81%), Gaps = 1/326 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K  A+E A+SQI++ +GKG+IM+LGS  +  + ++V+ SGSL LDIALGIGG+P GRIVE
Sbjct: 20  KKLAIEQAMSQIEKQFGKGSIMKLGSDSA-KQTVQVIPSGSLDLDIALGIGGYPIGRIVE 78

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL L  IA++QK GG  AF+DAEHALD  YA+KLGV++  LL+SQPD GE
Sbjct: 79  IYGPESSGKTTLTLSAIAEAQKRGGVAAFIDAEHALDPSYAKKLGVNIDELLVSQPDNGE 138

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           +ALEI + LVRS A+D+IVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT +I+
Sbjct: 139 EALEICESLVRSNAIDLIVIDSVAALVPKAEIEGDMGDSHMGLQARLMSQALRKLTGTIA 198

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +SK +++FINQ+RMKIGVMFGSPETTTGGNALKFY SVRLDIR++ +IK+K+   GN+ R
Sbjct: 199 KSKTVVIFINQIRMKIGVMFGSPETTTGGNALKFYCSVRLDIRKIETIKEKEESVGNRVR 258

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK A PFKQ EFDI++  GIS  G L+DLGVK  I+ K+GAW+S+  +++GQG+E
Sbjct: 259 VKVVKNKCAPPFKQAEFDIIFNAGISREGSLVDLGVKHDIIHKAGAWYSYNTEKIGQGKE 318

Query: 312 NSKIFLRENIEIAENIESLLRQNAGL 337
            +K +L+ N EIA  IE+++R    L
Sbjct: 319 AAKEYLKNNPEIALTIENMVRDLNSL 344


>gi|206890314|ref|YP_002248376.1| RecA protein [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742252|gb|ACI21309.1| RecA protein [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 342

 Score =  361 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 212/342 (61%), Positives = 273/342 (79%), Gaps = 1/342 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             DK KALE A+SQI++ +GKGAIM+LG++    EGI V+ +GS+ LDIA GIGG+P+GR
Sbjct: 2   NKDKLKALEIAISQIEKNFGKGAIMRLGTKAHA-EGIGVIPTGSISLDIATGIGGYPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EI+GPESSGKTTLALH IA++Q+ GG  AF+DAEHALD  YA KLGVD++NLLISQPD
Sbjct: 61  VIEIFGPESSGKTTLALHAIAEAQRHGGVAAFIDAEHALDVNYASKLGVDVENLLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALE+T+ LVRSGAVDIIVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT+
Sbjct: 121 TGEQALEVTETLVRSGAVDIIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTA 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +IS+S+  ++FINQ+R KIGVMFG+PETT GG ALKFY+S+RLDIR++ ++K+    TG 
Sbjct: 181 AISKSQTAVIFINQIRQKIGVMFGNPETTPGGTALKFYASMRLDIRKIDTLKEGQETTGG 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + RVK+VKNK+A PFKQ EFDI + EGIS  GE++DL V+  I++KSGAW+++ G RL Q
Sbjct: 241 RVRVKIVKNKVAPPFKQAEFDIYFNEGISKTGEILDLAVEKGIIEKSGAWYNYNGSRLAQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           GREN+K +L+ + EI   I S +    GL    + +      
Sbjct: 301 GRENAKEYLKTHPEIFNEIYSKVLDVYGLKQPKVSEGENKTE 342


>gi|164688502|ref|ZP_02212530.1| hypothetical protein CLOBAR_02147 [Clostridium bartlettii DSM
           16795]
 gi|164602915|gb|EDQ96380.1| hypothetical protein CLOBAR_02147 [Clostridium bartlettii DSM
           16795]
          Length = 355

 Score =  360 bits (924), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 212/348 (60%), Positives = 276/348 (79%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K  AL   L +I++ +GKG+IM+LG   S+   ++ +S+GS+GLDIA+GIGG P+GRIV
Sbjct: 6   EKLDALNHVLGKIEKDFGKGSIMRLGEASSMV--VDSISTGSIGLDIAVGIGGLPRGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH++A++QK GG  AF+DAEHALD +YAR LGVD+ NL+ISQPDTG
Sbjct: 64  EIYGPESSGKTTVALHSVAEAQKNGGIAAFIDAEHALDPVYARALGVDVDNLIISQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ L+RSGA+DIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT SI
Sbjct: 124 EQALEITEALIRSGAIDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGSI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+R K+G+MFG+PETTTGG ALKFYSSVRLD+R++ +IK  D I G++T
Sbjct: 184 KKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKILGSRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDIMYGEGIS  G+L+D+     IV KSG+W++++  +LGQGR
Sbjct: 244 RVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAANVDIVKKSGSWYNYQDIKLGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           EN K FL +N+++   IE  +R+   L  +    E     +D+ + +D
Sbjct: 304 ENVKKFLADNMDLTNEIEEKVRKYYKLGPEYRDLEEDELNEDNQNAND 351


>gi|11387030|sp|Q9JRP9|RECA_AGGAC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|7264738|gb|AAF44334.1|AF238282_1 recombinase A [Aggregatibacter actinomycetemcomitans]
          Length = 352

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 221/347 (63%), Positives = 279/347 (80%), Gaps = 2/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AAL QI++ +GKGAIM+LG    +   IE +S+GS GLD+ALGIGG P GRIV
Sbjct: 6   EKQKALDAALGQIEKQFGKGAIMKLGDSQKL--DIEAISTGSFGLDLALGIGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  IA++QKTG TCAF+DAEHALD IYA KLGVD+K  L+SQPD G
Sbjct: 64  EIFGPESSGKTTLTLSVIAEAQKTGKTCAFIDAEHALDPIYASKLGVDVKEPLVSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLTS I
Sbjct: 124 EQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTSQI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRRVGSIK+ D + GN+T
Sbjct: 184 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRVGSIKEGDEVIGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+QV+F I+YGEGIS   ELI+LGVK  ++ K+GAW++++ +++GQG+
Sbjct: 244 RVKVVKNKVAPPFRQVDFQILYGEGISKESELIELGVKHKLISKAGAWYAYQNEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
            N+  +L++N E A+ IES LR       +S +     +   + + D
Sbjct: 304 TNAMKWLKDNPEQAKFIESTLRDELLAHPESAITAEVEDEAGNGEGD 350


>gi|148887243|emb|CAM12788.1| recombinase A [Ochrobactrum intermedium]
          Length = 299

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 237/300 (79%), Positives = 274/300 (91%), Gaps = 1/300 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           +AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG PKGRIVEIYGPE
Sbjct: 1   DAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLPKGRIVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHTIA++Q  GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALHTIAEAQXKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS C+
Sbjct: 120 TDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCM 179

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQTRVKVVK
Sbjct: 180 VIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQTRVKVVK 239

Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316
           NK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QRLGQGREN+K +
Sbjct: 240 NKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQY 299


>gi|296803088|gb|ADH51620.1| DNA recombinase [Burkholderia cepacia]
          Length = 311

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 220/312 (70%), Positives = 272/312 (87%), Gaps = 1/312 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGLV 338
           IE+ +R++ G+V
Sbjct: 300 IENRIRESLGVV 311


>gi|224551675|gb|ACN54237.1| RecA [Burkholderia cenocepacia]
          Length = 321

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 220/314 (70%), Positives = 273/314 (86%), Gaps = 1/314 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L
Sbjct: 5   QFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTL 63

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+
Sbjct: 64  QVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGS 123

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RM
Sbjct: 124 IDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRM 183

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++
Sbjct: 184 KIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRE 243

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
             FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA 
Sbjct: 244 AIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAR 303

Query: 326 NIESLLRQNAGLVA 339
            IE+ +R++ G+V+
Sbjct: 304 EIENRIRESLGVVS 317


>gi|296803086|gb|ADH51619.1| DNA recombinase [Burkholderia cenocepacia]
          Length = 316

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 220/313 (70%), Positives = 272/313 (86%), Gaps = 1/313 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGLVA 339
           IE+ +R++ G+V 
Sbjct: 300 IENRIRESLGVVT 312


>gi|70904896|gb|AAZ14026.1| RecA [Burkholderia cenocepacia]
          Length = 330

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 221/325 (68%), Positives = 281/325 (86%), Gaps = 1/325 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +G+G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGEGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ 
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKV
Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           V+NK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++G G++N++
Sbjct: 240 VENKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGPGKDNAR 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339
             +RE+ EIA  IE+ +R++ G+V+
Sbjct: 300 DSVRESAEIAREIENRIRESLGVVS 324


>gi|296803056|gb|ADH51604.1| DNA recombinase [Burkholderia contaminans]
          Length = 316

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 220/313 (70%), Positives = 272/313 (86%), Gaps = 1/313 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGLVA 339
           IE+ +R++ G+V 
Sbjct: 300 IENRIRESLGVVT 312


>gi|109254803|emb|CAK22263.1| recombinase A [Ochrobactrum oryzae]
 gi|148897703|emb|CAM18505.1| recombinase A [Ochrobactrum oryzae]
          Length = 299

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 240/300 (80%), Positives = 275/300 (91%), Gaps = 1/300 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           +AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG PKGRIVEIYGPE
Sbjct: 1   DAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLPKGRIVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALHTIAEAQKRGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS C+
Sbjct: 120 TDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCM 179

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQTRVKVVK
Sbjct: 180 VIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQTRVKVVK 239

Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316
           NK+A PFKQVEFDIMYG G+S  GELIDLGVKA +V+KSGAWFS+  QRLGQGREN+K F
Sbjct: 240 NKLAPPFKQVEFDIMYGAGVSKTGELIDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQF 299


>gi|323701906|ref|ZP_08113576.1| recA protein [Desulfotomaculum nigrificans DSM 574]
 gi|323533210|gb|EGB23079.1| recA protein [Desulfotomaculum nigrificans DSM 574]
          Length = 347

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 205/349 (58%), Positives = 272/349 (77%), Gaps = 2/349 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + DK KALE ALS I++ +GKG+IM+LG    +   IE +S+G+L LDIALG+GG P+GR
Sbjct: 1   MSDKVKALELALSNIEKQFGKGSIMKLGEATKL--NIEAISTGALSLDIALGVGGVPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EIYGPESSGKTT+ALH IA++QKTGG  AF+DAEHALD +YAR+LGVD+ NLL+SQPD
Sbjct: 59  VIEIYGPESSGKTTVALHIIAEAQKTGGMAAFIDAEHALDPVYARRLGVDIDNLLVSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGA+D++V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKLT 
Sbjct: 119 TGEQALEICEALVRSGAIDVVVVDSVAALVPRAEIEGEMGDTHVGLQARLMSQALRKLTG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            +S+S+ I++FINQ+R K+GV++GSPE TTGG ALKFY+SVRL++R+  +IK    I G+
Sbjct: 179 IVSKSRSIVIFINQVREKVGVVYGSPEVTTGGRALKFYASVRLEVRKHENIKQGVDIIGS 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T+VKVVKNK+A PFK  EFDIMYG GIS  G L+D+     I++KSGAW+S+  +RLGQ
Sbjct: 239 RTKVKVVKNKVAPPFKMAEFDIMYGTGISKEGSLLDVATDLKIINKSGAWYSYGDERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           GREN K   +E  E+ + IE+ +R+   L +    +E   +  +  D +
Sbjct: 299 GRENVKELFKERPELCQEIEAKVREKLALGSTLPAKEDLTDQPETVDPE 347


>gi|146424877|emb|CAM12547.1| recombinase A [Ochrobactrum anthropi]
 gi|146424881|emb|CAM12549.1| recombinase A [Ochrobactrum anthropi]
 gi|146424883|emb|CAM12550.1| recombinase A [Ochrobactrum anthropi]
 gi|146424885|emb|CAM12551.1| recombinase A [Ochrobactrum anthropi]
 gi|146424887|emb|CAM12552.1| recombinase A [Ochrobactrum anthropi]
 gi|146424889|emb|CAM12553.1| recombinase A [Ochrobactrum anthropi]
 gi|146424891|emb|CAM12554.1| recombinase A [Ochrobactrum anthropi]
 gi|146424895|emb|CAM12556.1| recombinase A [Ochrobactrum anthropi]
 gi|146424897|emb|CAM12557.1| recombinase A [Ochrobactrum anthropi]
 gi|146424899|emb|CAM12558.1| recombinase A [Ochrobactrum anthropi]
 gi|146424901|emb|CAM12559.1| recombinase A [Ochrobactrum anthropi]
 gi|146424903|emb|CAM12560.1| recombinase A [Ochrobactrum anthropi]
 gi|146424905|emb|CAM12561.1| recombinase A [Ochrobactrum anthropi]
 gi|146424907|emb|CAM12562.1| recombinase A [Ochrobactrum anthropi]
 gi|146424909|emb|CAM12563.1| recombinase A [Ochrobactrum anthropi]
 gi|146424911|emb|CAM12564.1| recombinase A [Ochrobactrum anthropi]
 gi|146424913|emb|CAM12565.1| recombinase A [Ochrobactrum anthropi]
 gi|146424915|emb|CAM12566.1| recombinase A [Ochrobactrum anthropi]
 gi|146424917|emb|CAM12567.1| recombinase A [Ochrobactrum anthropi]
 gi|146424919|emb|CAM12568.1| recombinase A [Ochrobactrum anthropi]
 gi|146424921|emb|CAM12569.1| recombinase A [Ochrobactrum anthropi]
 gi|146424923|emb|CAM12570.1| recombinase A [Ochrobactrum anthropi]
 gi|146424925|emb|CAM12571.1| recombinase A [Ochrobactrum anthropi]
 gi|146424927|emb|CAM12572.1| recombinase A [Ochrobactrum anthropi]
 gi|146424929|emb|CAM12573.1| recombinase A [Ochrobactrum anthropi]
 gi|146424931|emb|CAM12574.1| recombinase A [Ochrobactrum anthropi]
 gi|146424933|emb|CAM12575.1| recombinase A [Ochrobactrum anthropi]
 gi|146424935|emb|CAM12576.1| recombinase A [Ochrobactrum anthropi]
 gi|146424937|emb|CAM12577.1| recombinase A [Ochrobactrum anthropi]
 gi|146424939|emb|CAM12578.1| recombinase A [Ochrobactrum anthropi]
 gi|146424941|emb|CAM12579.1| recombinase A [Ochrobactrum anthropi]
 gi|146424943|emb|CAM12580.1| recombinase A [Ochrobactrum anthropi]
 gi|146424945|emb|CAM12581.1| recombinase A [Ochrobactrum anthropi]
 gi|146424947|emb|CAM12582.1| recombinase A [Ochrobactrum anthropi]
 gi|146424949|emb|CAM12583.1| recombinase A [Ochrobactrum anthropi]
 gi|146424951|emb|CAM12584.1| recombinase A [Ochrobactrum anthropi]
 gi|146424953|emb|CAM12585.1| recombinase A [Ochrobactrum anthropi]
 gi|146424955|emb|CAM12586.1| recombinase A [Ochrobactrum anthropi]
 gi|146424957|emb|CAM12587.1| recombinase A [Ochrobactrum anthropi]
 gi|146424959|emb|CAM12588.1| recombinase A [Ochrobactrum anthropi]
 gi|146424961|emb|CAM12589.1| recombinase A [Ochrobactrum anthropi]
 gi|146424963|emb|CAM12590.1| recombinase A [Ochrobactrum anthropi]
 gi|146424965|emb|CAM12591.1| recombinase A [Ochrobactrum anthropi]
 gi|146424967|emb|CAM12592.1| recombinase A [Ochrobactrum anthropi]
 gi|146424969|emb|CAM12593.1| recombinase A [Ochrobactrum anthropi]
 gi|146424971|emb|CAM12594.1| recombinase A [Ochrobactrum anthropi]
 gi|146424977|emb|CAM12597.1| recombinase A [Ochrobactrum anthropi]
 gi|146424979|emb|CAM12598.1| recombinase A [Ochrobactrum anthropi]
 gi|146424981|emb|CAM12599.1| recombinase A [Ochrobactrum anthropi]
 gi|146424983|emb|CAM12600.1| recombinase A [Ochrobactrum anthropi]
 gi|148887235|emb|CAM12784.1| recombinase A [Ochrobactrum anthropi]
 gi|148887247|emb|CAM12790.1| recombinase A [Ochrobactrum anthropi]
 gi|148897665|emb|CAM18486.1| recombinase A [Ochrobactrum intermedium]
 gi|148897695|emb|CAM18501.1| recombinase A [Ochrobactrum lupini]
 gi|148897697|emb|CAM18502.1| recombinase A [Ochrobactrum tritici]
 gi|148897699|emb|CAM18503.1| recombinase A [Ochrobactrum tritici]
 gi|148897701|emb|CAM18504.1| recombinase A [Ochrobactrum tritici]
 gi|148897711|emb|CAM18509.1| recombinase A [Ochrobactrum anthropi]
          Length = 299

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 237/300 (79%), Positives = 274/300 (91%), Gaps = 1/300 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           +AALSQI+R +GKG+IM+LG    + E IE V +GSL LDIALG+GG PKGRIVEIYGPE
Sbjct: 1   DAALSQIERAFGKGSIMRLGKNAPVIE-IETVPTGSLSLDIALGVGGLPKGRIVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS C+
Sbjct: 120 TDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCM 179

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQTRVKVVK
Sbjct: 180 VIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQTRVKVVK 239

Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316
           NK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QRLGQGREN+K +
Sbjct: 240 NKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQY 299


>gi|71279561|ref|YP_270789.1| recA protein [Colwellia psychrerythraea 34H]
 gi|123760965|sp|Q47WN3|RECA_COLP3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|71145301|gb|AAZ25774.1| recA protein [Colwellia psychrerythraea 34H]
          Length = 345

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 216/344 (62%), Positives = 277/344 (80%), Gaps = 2/344 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL AAL+QI+R +GKG+IM+LG   ++   +E +S+GSLGLDIALG GG P GR+V
Sbjct: 4   DKEKALSAALAQIERQFGKGSIMKLGDNTTM--DVETISTGSLGLDIALGAGGLPMGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA++Q+ G  CAF+DAEHALD +YA KLGV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTLTLEVIAEAQRNGKVCAFIDAEHALDPVYAEKLGVNIDELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DML RSGA+D+IV+DSVAALTP+AEIEGDMG+S  G+QAR++SQA+RKLT ++
Sbjct: 122 EQALEIVDMLTRSGAIDVIVVDSVAALTPKAEIEGDMGDSHMGLQARMLSQAMRKLTGNL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+ D I GN+T
Sbjct: 182 KKSNTMLIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKNGDEIVGNET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EF I+YGEGI+  GELI+LGVK   V+K+GAW+S  G+R+GQG+
Sbjct: 242 RVKVVKNKIAPPFKQAEFQILYGEGINNLGELIELGVKHEFVEKAGAWYSCNGERIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
            N+  +L E+ E+A+++++ LR            +  +  K+ A
Sbjct: 302 ANAAKYLDEHPEMAKDVDTKLRDMFLSKTVVAEDKSEVKEKEKA 345


>gi|256851478|ref|ZP_05556867.1| recA protein [Lactobacillus jensenii 27-2-CHN]
 gi|260660899|ref|ZP_05861814.1| recA protein [Lactobacillus jensenii 115-3-CHN]
 gi|282933478|ref|ZP_06338854.1| RecA protein [Lactobacillus jensenii 208-1]
 gi|297206293|ref|ZP_06923688.1| recombination protein A [Lactobacillus jensenii JV-V16]
 gi|256616540|gb|EEU21728.1| recA protein [Lactobacillus jensenii 27-2-CHN]
 gi|260548621|gb|EEX24596.1| recA protein [Lactobacillus jensenii 115-3-CHN]
 gi|281302409|gb|EFA94635.1| RecA protein [Lactobacillus jensenii 208-1]
 gi|297149419|gb|EFH29717.1| recombination protein A [Lactobacillus jensenii JV-V16]
          Length = 360

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 191/357 (53%), Positives = 270/357 (75%), Gaps = 2/357 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K  AL+AAL +I++ +GKGA+M++G +  +   I  V +GSL LD A+G+GG+P+
Sbjct: 1   MAKDEKQAALDAALKKIEKNFGKGAVMRMGEK--VDTQISTVPTGSLALDAAIGVGGYPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVE+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQ
Sbjct: 59  GRIVEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+G+MG+S  G+QARLMSQALRKL
Sbjct: 119 PNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + +I+++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK    + 
Sbjct: 179 SGNINKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSSDVV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+ V   IVDK+G+W+S+K  R+
Sbjct: 239 GNRVKIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAVDKDIVDKAGSWYSYKEDRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           GQGREN+K +L ++ +I   I + +R+  G+ A SL ++       +  + D  + E
Sbjct: 299 GQGRENAKQYLEDHPDIYNEIMTQVREAYGIDAKSLEEKEDPAKIKEKIEQDEKSGE 355


>gi|313896334|ref|ZP_07829887.1| RecA protein [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320529149|ref|ZP_08030241.1| protein RecA [Selenomonas artemidis F0399]
 gi|312975133|gb|EFR40595.1| RecA protein [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320138779|gb|EFW30669.1| protein RecA [Selenomonas artemidis F0399]
          Length = 360

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 202/346 (58%), Positives = 262/346 (75%), Gaps = 1/346 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           + + +ALE AL QI++ +GKGAIM+LG   +    IEV+S+G L LDIALG+GG P+GRI
Sbjct: 15  MTREEALEQALKQIEKAHGKGAIMRLGEAQANMN-IEVISTGILPLDIALGVGGIPRGRI 73

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +E+YGPESSGKTT+ LH IA++QK GG  AF+DAEHALD  YA++LGV+++ LLISQPDT
Sbjct: 74  IEVYGPESSGKTTVTLHMIAEAQKAGGVAAFIDAEHALDPEYAKRLGVNIEELLISQPDT 133

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVDIIV+DSVAAL P++EI+ DMG S  G+QARLMSQA+RKLT  
Sbjct: 134 GEQALEIVDALVRSGAVDIIVVDSVAALVPKSEIDEDMGSSHVGLQARLMSQAMRKLTGI 193

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+++ + +FINQ+R KIGV +G+PETTTGG ALKFY+SVR+D+RR  +IK      GN+
Sbjct: 194 ISKTRTVAIFINQLREKIGVTYGNPETTTGGRALKFYASVRIDVRRSDTIKQGSDSLGNR 253

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TR K+VKNK+A PFK  EFDIMYGEG+S  G +ID+GV   IVDKSGAW+S++G RLGQG
Sbjct: 254 TRAKIVKNKVAPPFKTAEFDIMYGEGVSRIGSIIDMGVDLDIVDKSGAWYSYEGTRLGQG 313

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           +EN+K  L    E+   IE  +R+    +     ++       + +
Sbjct: 314 KENAKAALESKPELIAEIEGKIREQLLTIGGVGGEDTPDAVDAETE 359


>gi|296802998|gb|ADH51575.1| DNA recombinase [Burkholderia contaminans]
          Length = 313

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 220/313 (70%), Positives = 272/313 (86%), Gaps = 1/313 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGLVA 339
           IE+ +R++ G+V 
Sbjct: 300 IENRIRESLGVVT 312


>gi|157326907|gb|ABV44566.1| RecA [Burkholderia cenocepacia]
          Length = 311

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 218/312 (69%), Positives = 271/312 (86%), Gaps = 1/312 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI
Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299

Query: 324 AENIESLLRQNA 335
           A  IE+ +R++ 
Sbjct: 300 AREIENRIRESL 311


>gi|157164266|ref|YP_001467588.1| recombinase A [Campylobacter concisus 13826]
 gi|112801133|gb|EAT98477.1| protein RecA [Campylobacter concisus 13826]
          Length = 365

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 211/354 (59%), Positives = 275/354 (77%), Gaps = 5/354 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +  DK KALE AL QI + +GKG +++LG +    E IE + +GSLGLD+ALGIGG PKG
Sbjct: 16  SEADKKKALELALKQIDKAFGKGTLLRLGDKE--VEAIESIPTGSLGLDLALGIGGVPKG 73

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EIYGPESSGKTTL LH IA++QK GG CAFVDAEHALD  YA  LGV+  NL +SQP
Sbjct: 74  RIIEIYGPESSGKTTLTLHIIAEAQKAGGICAFVDAEHALDVKYASNLGVNTDNLYVSQP 133

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI + L RSGA+D+IV+DSVAALTP++EI+GDMG+   G+QARLMSQALRKLT
Sbjct: 134 DFGEQALEIVETLARSGAIDLIVVDSVAALTPKSEIDGDMGDQHVGLQARLMSQALRKLT 193

Query: 188 SSISRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
             +S+ K  ++FINQ+RMKI  + +G+PETTTGGNALKFYSSVR+D+R++ ++K  D   
Sbjct: 194 GILSKMKTTVIFINQIRMKIGMMGYGTPETTTGGNALKFYSSVRIDVRKIATLKQNDEPI 253

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+T+ KVVKNK+A PFK  EFDIM+GEG+S  GE+ID GVK  I+DKSGAWFS+K ++L
Sbjct: 254 GNRTKAKVVKNKVAPPFKVAEFDIMFGEGVSKEGEIIDYGVKLDIIDKSGAWFSYKAEKL 313

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           GQGREN+K +L+E+ EI++ I + ++ + G+  D L+   A +  DD ++   +
Sbjct: 314 GQGRENAKAYLKEHPEISDEIVAAIKGSMGI--DHLISSGAKDEDDDTNEAGDE 365


>gi|300361272|ref|ZP_07057449.1| recombination protein A [Lactobacillus gasseri JV-V03]
 gi|300353891|gb|EFJ69762.1| recombination protein A [Lactobacillus gasseri JV-V03]
          Length = 354

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 186/353 (52%), Positives = 264/353 (74%), Gaps = 2/353 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   DK KAL+ AL +I++ +GKGA+M++G +  +   I  + SGSL LD ALG+GG+P+
Sbjct: 1   MAKDDKKKALDIALKKIEKDFGKGAVMRMGEK--VDTQISTIPSGSLALDAALGVGGYPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQ
Sbjct: 59  GRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+GDMG+S  G+QARLMSQALRKL
Sbjct: 119 PNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGDMGDSHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + +IS++K I VFINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK    + 
Sbjct: 179 SGNISKTKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQGSDVI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ ++KVVKNK+A PFK  E DIMYG+GIS  GELID+     I+ K+G+W+S+   R+
Sbjct: 239 GNRVKLKVVKNKVAPPFKVAEVDIMYGKGISQTGELIDMAADKDIIKKAGSWYSYGDDRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           GQGREN+K +L E+ ++ + ++  +R+  G+ + ++ +          +   +
Sbjct: 299 GQGRENAKQYLEEHPDVYDEVKEKVRKAYGIDSKAIEERENPEKNKAGEGSSS 351


>gi|112362894|emb|CAL34148.1| recombinase A [Brucella microti CCM 4915]
 gi|112362896|emb|CAL34149.1| recombinase A [Brucella microti]
          Length = 299

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 238/300 (79%), Positives = 274/300 (91%), Gaps = 1/300 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           +AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG PKGRIVEIYGPE
Sbjct: 1   DAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLPKGRIVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT SISRS C+
Sbjct: 120 TDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTGSISRSNCM 179

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQTRVKVVK
Sbjct: 180 VIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQTRVKVVK 239

Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316
           NK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QRLGQGREN+K +
Sbjct: 240 NKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQY 299


>gi|300692434|ref|YP_003753429.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Ralstonia solanacearum PSI07]
 gi|299079494|emb|CBJ52170.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Ralstonia solanacearum PSI07]
          Length = 352

 Score =  360 bits (923), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 215/317 (67%), Positives = 272/317 (85%), Gaps = 2/317 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G   +  E ++VVS+GSLGLD+ALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 25  IEKQFGKGSIMKMGD--AEVEPVQVVSTGSLGLDVALGVGGLPRGRVVEIYGPESSGKTT 82

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +A+ QK GGTCAF+DAEHALD  YA KLGV + +LLISQPDTGEQALEI D LVR
Sbjct: 83  LTLQVVAEMQKLGGTCAFIDAEHALDVTYADKLGVKVPDLLISQPDTGEQALEIADALVR 142

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG+VD+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 143 SGSVDLIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 202

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T+VKVVKNK+A P
Sbjct: 203 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKRGDEVVGNETKVKVVKNKVAPP 262

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YG G+S  GE+IDLGV+A +V+KSGAW+S+ G R+GQGR+N + FLREN E
Sbjct: 263 FREAIFDILYGAGVSREGEIIDLGVEAKVVEKSGAWYSYNGDRIGQGRDNCREFLRENPE 322

Query: 323 IAENIESLLRQNAGLVA 339
           +A  IE+ +R++ G+V 
Sbjct: 323 LAREIENKVREHLGVVP 339


>gi|87244455|gb|ABD34619.1| RecA [Anaplasma centrale]
          Length = 357

 Score =  360 bits (923), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 218/357 (61%), Positives = 282/357 (78%), Gaps = 2/357 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   K+    DK KAL+AA+SQI+R +G+GAIM+L  +    E ++ VS+GS+ LD ALG
Sbjct: 1   MSGSKKDVESDKQKALDAAISQIERAFGRGAIMKL--KQHPAEKMDSVSTGSIALDAALG 58

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG PKGRIVEI+GPESSGKTTLALH IA++QK GG CAF+DAEHALD++YARKLGV + 
Sbjct: 59  IGGLPKGRIVEIFGPESSGKTTLALHVIAEAQKQGGNCAFIDAEHALDTVYARKLGVSVG 118

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +L++SQPDTGEQAL I + LV SGA+D+IV+DSVAALTPRAEIEGDMG+   G+QARL+S
Sbjct: 119 DLIVSQPDTGEQALHIVEYLVCSGAIDVIVVDSVAALTPRAEIEGDMGDQHMGLQARLLS 178

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
            ALRKLTS +S++ CILVFINQ+R+KIGVM+G+PE TTGG+ALKFY+S+RLDIR+V +IK
Sbjct: 179 HALRKLTSVVSKANCILVFINQIRIKIGVMYGNPEVTTGGSALKFYTSIRLDIRKVSAIK 238

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           DKDS+ GNQTRVKVVKNK+A PFKQ EFDI+Y EGIS  GE++D+GVK   V+KSGA++S
Sbjct: 239 DKDSVIGNQTRVKVVKNKVAPPFKQAEFDIVYNEGISKLGEIVDMGVKFGFVEKSGAYYS 298

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           +   +LGQGREN+K +L+ + ++A  +E  +R        +     A    D  +++
Sbjct: 299 YGAVKLGQGRENAKAYLKSSPDVANELEQKIRAYLAESMHNNDLFAADGRTDVLEEE 355


>gi|260583531|ref|ZP_05851279.1| protein RecA [Granulicatella elegans ATCC 700633]
 gi|260158157|gb|EEW93225.1| protein RecA [Granulicatella elegans ATCC 700633]
          Length = 351

 Score =  360 bits (923), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 197/338 (58%), Positives = 262/338 (77%), Gaps = 2/338 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +  ++ +AL+ AL +I++ YGKGA+M+LG +      ++ VSSGSL LDIALG GG+PKG
Sbjct: 3   DQENRQRALDDALKKIEKSYGKGAVMKLGEKADS--QVQTVSSGSLALDIALGAGGYPKG 60

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EI+GPESSGKTT+ALH +A+ QK GG  AF+DAEHALD  YAR LGV+++ LL+SQP
Sbjct: 61  RIIEIFGPESSGKTTVALHAVAEVQKRGGVAAFIDAEHALDPEYARALGVNIEELLLSQP 120

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQ L I D LV SGAVDI+++DSVAAL PRAEIEGDMG+S  G+QARLMSQALRKL+
Sbjct: 121 DTGEQGLGIADALVASGAVDIVIVDSVAALVPRAEIEGDMGQSHVGLQARLMSQALRKLS 180

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            +I+R+K I +FINQ+R K+G+MFG+PETT GG ALKFY+S+RLD+RR   IK+   I G
Sbjct: 181 GTINRTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASIRLDVRRSDQIKNGAEILG 240

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N T++KVVKNK+A PFK  E DIMYGEGIS  GE++D+     +V KSGAW+++  +++G
Sbjct: 241 NHTKIKVVKNKVAPPFKTAEVDIMYGEGISQIGEILDMASDLDLVKKSGAWYAYNDEKIG 300

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           QGREN+K +L E+ EI + +   +R +  +  + + QE
Sbjct: 301 QGRENAKKYLTEHPEIVDVLTQKIRAHYNIGGEVISQE 338


>gi|116328242|ref|YP_797962.1| recombinase A [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116330966|ref|YP_800684.1| recombinase A [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116120986|gb|ABJ79029.1| RecA recombinase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116124655|gb|ABJ75926.1| RecA recombinase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 367

 Score =  360 bits (923), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 213/336 (63%), Positives = 272/336 (80%), Gaps = 3/336 (0%)

Query: 4   RKEMNIVDKSK--ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           ++E   VD SK  A+E A++QI++ +GKG+IM+LGS  S  + ++V+ SGSL LDIALGI
Sbjct: 10  KEEAQNVDDSKKLAIEQAMNQIEKQFGKGSIMKLGSDTS-KQTVQVIPSGSLDLDIALGI 68

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+P GRIVEIYGPESSGKTTL L  IA++QK GG  AF+DAEHALD  YA+KLGV++  
Sbjct: 69  GGYPIGRIVEIYGPESSGKTTLTLSAIAEAQKRGGVAAFIDAEHALDPSYAKKLGVNIDE 128

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPD GE+ALEI + LVRS A+D+IVIDSVAAL P+AEIEGDMG+S  G+QARLMSQ
Sbjct: 129 LLVSQPDNGEEALEICESLVRSNAIDLIVIDSVAALVPKAEIEGDMGDSHMGLQARLMSQ 188

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT +I++SK ++VFINQ+RMKIGVMFGSPETTTGGNALKFY S+RLDIR++ +IK+
Sbjct: 189 ALRKLTGTIAKSKTVVVFINQIRMKIGVMFGSPETTTGGNALKFYCSIRLDIRKIETIKE 248

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
           K+   GN+ RVKVVKNK A PFKQ EFDI++  GIS  G L+DLGVK  I+ K+GAW+S+
Sbjct: 249 KEESVGNRVRVKVVKNKCAPPFKQAEFDIIFNAGISREGSLVDLGVKHDIIHKAGAWYSY 308

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
             +++GQG+E +K +L+ N EIA  IE+++R    L
Sbjct: 309 NTEKIGQGKEAAKEYLKNNPEIALTIENMIRDLNSL 344


>gi|146424893|emb|CAM12555.1| recombinase A [Ochrobactrum anthropi]
 gi|146424973|emb|CAM12595.1| recombinase A [Ochrobactrum anthropi]
 gi|148887245|emb|CAM12789.1| recombinase A [Ochrobactrum intermedium]
 gi|148897667|emb|CAM18487.1| recombinase A [Ochrobactrum intermedium]
 gi|148897669|emb|CAM18488.1| recombinase A [Ochrobactrum intermedium]
 gi|148897671|emb|CAM18489.1| recombinase A [Ochrobactrum intermedium]
 gi|148897673|emb|CAM18490.1| recombinase A [Ochrobactrum intermedium]
 gi|148897675|emb|CAM18491.1| recombinase A [Ochrobactrum intermedium]
 gi|148897677|emb|CAM18492.1| recombinase A [Ochrobactrum intermedium]
 gi|148897681|emb|CAM18494.1| recombinase A [Ochrobactrum intermedium]
 gi|148897683|emb|CAM18495.1| recombinase A [Ochrobactrum intermedium]
 gi|148897685|emb|CAM18496.1| recombinase A [Ochrobactrum intermedium]
 gi|148897687|emb|CAM18497.1| recombinase A [Ochrobactrum intermedium]
 gi|148897689|emb|CAM18498.1| recombinase A [Ochrobactrum intermedium]
 gi|148897691|emb|CAM18499.1| recombinase A [Ochrobactrum intermedium]
 gi|148897693|emb|CAM18500.1| recombinase A [Ochrobactrum intermedium]
          Length = 299

 Score =  360 bits (923), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 238/300 (79%), Positives = 275/300 (91%), Gaps = 1/300 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           +AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG PKGRIVEIYGPE
Sbjct: 1   DAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLPKGRIVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS C+
Sbjct: 120 TDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCM 179

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQTRVKVVK
Sbjct: 180 VIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQTRVKVVK 239

Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316
           NK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QRLGQGREN+K +
Sbjct: 240 NKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQY 299


>gi|93278392|gb|ABF06626.1| RecA [Mycobacterium gadium]
          Length = 312

 Score =  360 bits (923), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 201/310 (64%), Positives = 258/310 (83%), Gaps = 2/310 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE AL+QI++ +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 5   PDREKALELALAQIEKNHGKGSVMRLGEE--VRQPISVIPTGSIALDVALGIGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 63  IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 123 GEQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +S S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+
Sbjct: 183 LSNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   V KSG+WF+++G++LGQG
Sbjct: 243 TRVKVVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEHGFVRKSGSWFTYEGEQLGQG 302

Query: 310 RENSKIFLRE 319
           +EN++ FL E
Sbjct: 303 KENARNFLLE 312


>gi|170664160|gb|ACB28499.1| RecA [Burkholderia ambifaria]
 gi|170664162|gb|ACB28500.1| RecA [Burkholderia ambifaria]
 gi|170664164|gb|ACB28501.1| RecA [Burkholderia ambifaria]
 gi|170664166|gb|ACB28502.1| RecA [Burkholderia ambifaria]
 gi|170664168|gb|ACB28503.1| RecA [Burkholderia ambifaria]
 gi|170664170|gb|ACB28504.1| RecA [Burkholderia ambifaria]
 gi|170664172|gb|ACB28505.1| RecA [Burkholderia ambifaria]
          Length = 310

 Score =  360 bits (923), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 218/311 (70%), Positives = 272/311 (87%), Gaps = 1/311 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            +A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGL 337
           IE+ +R++ G+
Sbjct: 300 IENRIRESLGV 310


>gi|11387036|sp|Q9R9U2|RECA_PSEOL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|5824159|emb|CAB54066.1| RecA gene protein [Pseudomonas putida]
          Length = 348

 Score =  360 bits (923), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 208/345 (60%), Positives = 275/345 (79%), Gaps = 2/345 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI++ +GKG+IM+LGS  ++   I+V+S+GSLGLDIALG+GG P+GRIVE
Sbjct: 5   KSKALEAALSQIEKQFGKGSIMRLGSDRTM--DIDVISTGSLGLDIALGVGGLPRGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL L  IA++Q+ G TCAFVDAEHALD IYA KLGV++  LL SQPDTGE
Sbjct: 63  IYGPESSGKTTLTLSVIAEAQRQGLTCAFVDAEHALDPIYAAKLGVNIDELLCSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D+L RSGAV++IV+DSVAAL P+AEIEG++G+S  G+ AR+MSQA+RK+T ++ 
Sbjct: 123 QALEIVDILTRSGAVNLIVVDSVAALVPKAEIEGEIGDSHVGLAARMMSQAMRKITGNLK 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
            S  + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++K+ + + G++TR
Sbjct: 183 NSNTMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGEEVVGSETR 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A+PF+Q EF I+YG+GIS  GE++DL V  + V+KSGAW+SF+G ++GQG+ 
Sbjct: 243 VKVVKNKVAAPFRQAEFQIVYGQGISKAGEIVDLAVANNFVEKSGAWYSFEGNKIGQGKA 302

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           N+  +L EN    + +E ++R+       +         ++ AD 
Sbjct: 303 NTMKWLLENKPTMDKLEGMIREKLMSKPQAETSARLATQEELADD 347


>gi|228940857|ref|ZP_04103417.1| hypothetical protein bthur0008_34980 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228973778|ref|ZP_04134355.1| hypothetical protein bthur0003_35330 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228980333|ref|ZP_04140644.1| hypothetical protein bthur0002_35020 [Bacillus thuringiensis Bt407]
 gi|229104343|ref|ZP_04235012.1| hypothetical protein bcere0019_34910 [Bacillus cereus Rock3-28]
 gi|228679041|gb|EEL33249.1| hypothetical protein bcere0019_34910 [Bacillus cereus Rock3-28]
 gi|228779438|gb|EEM27694.1| hypothetical protein bthur0002_35020 [Bacillus thuringiensis Bt407]
 gi|228785930|gb|EEM33932.1| hypothetical protein bthur0003_35330 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818871|gb|EEM64936.1| hypothetical protein bthur0008_34980 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326941492|gb|AEA17388.1| recombinase A [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 343

 Score =  360 bits (923), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 209/345 (60%), Positives = 272/345 (78%), Gaps = 2/345 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG Q      I  +SSGSL LD+ALG+GG+P+GR
Sbjct: 1   MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERR--ISTISSGSLALDVALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPD
Sbjct: 59  IIEIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   +K  + I GN
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T+VKVVKNK+A PF+  E DIMYGEGIS  GE++D+  +  IV KSGAW+S+  +RLGQ
Sbjct: 239 KTKVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           GRENSK FL+EN ++ E I   +R + G+  DS +++   +T  D
Sbjct: 299 GRENSKQFLKENTDLREEIAFFVRDHHGIGEDSGVEDTEDSTLQD 343


>gi|212696531|ref|ZP_03304659.1| hypothetical protein ANHYDRO_01069 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676467|gb|EEB36074.1| hypothetical protein ANHYDRO_01069 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 340

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 202/345 (58%), Positives = 268/345 (77%), Gaps = 5/345 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   K+    DK KAL  A   I++ YGKGAIM++G    +   + V+ +G++ LD+ALG
Sbjct: 1   MAGEKDK---DKEKALSQAFKNIEKKYGKGAIMKMGEAPKV--DVTVIPTGAINLDMALG 55

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG P+GR++EI+GPESSGKTTL LH IA+ QK G TCAF+DAEHA+D+ YA++LGV++ 
Sbjct: 56  VGGLPRGRVIEIFGPESSGKTTLTLHCIAEDQKLGNTCAFIDAEHAMDAEYAKRLGVNID 115

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            L+++QPDTGEQAL+I + LVRS AVD+IV+DSVAAL PRAEIEG+MG+S  G+QARLMS
Sbjct: 116 ELILAQPDTGEQALDIAESLVRSAAVDLIVVDSVAALVPRAEIEGEMGDSHMGLQARLMS 175

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALR+LT  IS+S   ++FINQ+R KIGVMFG+PETTTGG ALKFYSSVRLDIRR+ +I+
Sbjct: 176 QALRRLTGIISKSNTTVIFINQLREKIGVMFGNPETTTGGRALKFYSSVRLDIRRIKTIQ 235

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             D++ GN+TRVKVVKNK+A PFK VEFDIMYG GIS  G ++D  V   IV+K+G+W+S
Sbjct: 236 QGDNMVGNRTRVKVVKNKVAPPFKVVEFDIMYGTGISKSGVILDSAVDKDIVEKAGSWYS 295

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           + G++LGQGREN K +L EN +I   IE+ LR++    ++   ++
Sbjct: 296 YNGEKLGQGRENVKQYLEENEDILNEIENKLRESINPNSNKEEKK 340


>gi|253576029|ref|ZP_04853362.1| recA protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844604|gb|EES72619.1| recA protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 346

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 212/348 (60%), Positives = 275/348 (79%), Gaps = 8/348 (2%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  ++  ALE AL +I++ YGKGA+M+LG    +   +E VSSG+L LDIALG+GGFP+G
Sbjct: 3   NQENRQAALEKALKEIEKSYGKGAVMKLGEAAHV--QVETVSSGNLALDIALGVGGFPRG 60

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+E+YGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD +YA+ +GV++  LL+SQP
Sbjct: 61  RIIEVYGPESSGKTTVALHAIAEVQKLGGQAAFIDAEHALDPLYAKNIGVNIDELLLSQP 120

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D LVR+GAVDIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQA+RKL+
Sbjct: 121 DTGEQALEIADALVRTGAVDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQAMRKLS 180

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            S+S+SK I +FINQ+R K+GV FGSPE T GG ALKFYSSVRLD+RR+ +IK  + + G
Sbjct: 181 GSLSKSKTIAIFINQLREKVGVSFGSPEVTPGGRALKFYSSVRLDVRRMETIKLGNEMVG 240

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           ++TR+KVVKNK+A PFKQVE D+MYGEGIS    L+DLGV+ ++V+KSG+WFS+ G RLG
Sbjct: 241 SRTRIKVVKNKVAPPFKQVEVDMMYGEGISKEATLLDLGVELNVVEKSGSWFSYAGDRLG 300

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           QGREN+K FL+E+ E+A  I+S +R         +  +P +   +D +
Sbjct: 301 QGRENAKQFLKEHPEVAFKIDSEIR------GSEVELKPVLEEAEDRE 342


>gi|146305465|ref|YP_001185930.1| recA protein [Pseudomonas mendocina ymp]
 gi|145573666|gb|ABP83198.1| recA protein [Pseudomonas mendocina ymp]
          Length = 348

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 209/345 (60%), Positives = 275/345 (79%), Gaps = 2/345 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI++ +GKG+IM+LGS  ++   I+V+S+GSLGLDIALG+GG P+GRIVE
Sbjct: 5   KSKALEAALSQIEKQFGKGSIMRLGSDRTM--DIDVISTGSLGLDIALGVGGLPRGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL L  IA++Q+ G TCAFVDAEHALD IYA KLGV++  LL SQPDTGE
Sbjct: 63  IYGPESSGKTTLTLSVIAEAQRQGLTCAFVDAEHALDPIYAAKLGVNIDELLCSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D+L RSGAV++IV+DSVAAL P+AEIEG++G+S  G+ AR+MSQA+RK+T ++ 
Sbjct: 123 QALEIVDILTRSGAVNLIVVDSVAALVPKAEIEGEIGDSHVGLAARMMSQAMRKITGNLK 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
            S  + +FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ + + G++TR
Sbjct: 183 NSNTMCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGEEVVGSETR 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A+PF+Q EF I+YG+GIS  GE++DL V  + V+KSGAW+SF+G ++GQG+ 
Sbjct: 243 VKVVKNKVAAPFRQAEFQIVYGQGISKAGEIVDLAVANNFVEKSGAWYSFEGNKIGQGKA 302

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           N+  +L EN    + +E ++R+       +         ++ AD 
Sbjct: 303 NTMKWLLENKPTMDKLEGMIREKLMSKPQAETSARLATQEELADD 347


>gi|116629966|ref|YP_815138.1| recombinase A [Lactobacillus gasseri ATCC 33323]
 gi|238854070|ref|ZP_04644420.1| protein RecA [Lactobacillus gasseri 202-4]
 gi|116095548|gb|ABJ60700.1| RecA protein [Lactobacillus gasseri ATCC 33323]
 gi|238833304|gb|EEQ25591.1| protein RecA [Lactobacillus gasseri 202-4]
          Length = 364

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 187/343 (54%), Positives = 262/343 (76%), Gaps = 2/343 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   DK KAL+ AL +I++ +GKGA+M++G +  +   I  + SGSL LD ALG+GG+P+
Sbjct: 1   MAKDDKKKALDIALKKIEKDFGKGAVMRMGEK--VDTQISTIPSGSLALDAALGVGGYPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQ
Sbjct: 59  GRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+GDMG+S  G+QARLMSQALRKL
Sbjct: 119 PNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGDMGDSHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + +IS++K I VFINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK    + 
Sbjct: 179 SGNISKTKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQGSDVI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ ++KVVKNK+A PFK  E DIMYG+GIS  GELID+     I+ K+G+W+S+   R+
Sbjct: 239 GNRVKLKVVKNKVAPPFKVAEVDIMYGKGISQTGELIDMAADKDIIKKAGSWYSYGDDRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
           GQGREN+K +L E+ ++ + ++  +R+  G+ A ++ +     
Sbjct: 299 GQGRENAKQYLEEHPDVYDEVKEKVRKAYGIDAKAIEERENPE 341


>gi|170664176|gb|ACB28507.1| RecA [Burkholderia pyrrocinia]
          Length = 310

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 220/311 (70%), Positives = 272/311 (87%), Gaps = 1/311 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QKTGGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+V
Sbjct: 60  VIAELQKTGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGL 337
           IE+ +R++ G+
Sbjct: 300 IENRIRESLGV 310


>gi|218898879|ref|YP_002447290.1| protein RecA [Bacillus cereus G9842]
 gi|228902282|ref|ZP_04066442.1| hypothetical protein bthur0014_34600 [Bacillus thuringiensis IBL
           4222]
 gi|228966723|ref|ZP_04127767.1| hypothetical protein bthur0004_35290 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|226737750|sp|B7ITN1|RECA_BACC2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|218541865|gb|ACK94259.1| protein RecA [Bacillus cereus G9842]
 gi|228792822|gb|EEM40380.1| hypothetical protein bthur0004_35290 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228857397|gb|EEN01897.1| hypothetical protein bthur0014_34600 [Bacillus thuringiensis IBL
           4222]
          Length = 343

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 209/345 (60%), Positives = 271/345 (78%), Gaps = 2/345 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG Q      I  +SSGSL LD+ALG+GG+P+GR
Sbjct: 1   MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERR--ISTISSGSLALDVALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPD
Sbjct: 59  IIEIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   +K  + I GN
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T+VKVVKNK+A PF+  E DIMYGEGIS  GE++D+  +  IV KSGAW+S+  +RLGQ
Sbjct: 239 KTKVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           GRENSK FL+EN ++ E I   +R + G+  DS +++    T  D
Sbjct: 299 GRENSKQFLKENTDLREEIAFFVRDHHGIGEDSGVEDTEDATLQD 343


>gi|332111369|gb|EGJ11353.1| reca protein [Rubrivivax benzoatilyticus JA2]
          Length = 348

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 214/315 (67%), Positives = 278/315 (88%), Gaps = 1/315 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG  G + E I+VVS+GS+GLD+ALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 22  IEKQFGKGSIMRLGE-GEVIEDIQVVSTGSVGLDVALGVGGLPRGRVVEIYGPESSGKTT 80

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QKTGGTCAF+DAEHALD  YA+KLGV+L++LLISQPDTGEQALEI D LVR
Sbjct: 81  LTLQVIAEMQKTGGTCAFIDAEHALDIQYAQKLGVNLQDLLISQPDTGEQALEIVDALVR 140

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IV+DSVAALTP+AEIEG+MG+SLPG+QARLMSQALRKLT++I ++  +++FINQ
Sbjct: 141 SGSIDLIVVDSVAALTPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNTMVIFINQ 200

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK  D + G++T+VKVVKNK++ P
Sbjct: 201 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGNIKKGDEVIGSETKVKVVKNKVSPP 260

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FK  EFDI+YGEGIS  GE+ID+GV A IV+KSGAW+++ G+++GQG++N++ FLREN +
Sbjct: 261 FKTAEFDILYGEGISREGEIIDMGVNARIVEKSGAWYAYNGEKIGQGKDNAREFLRENPD 320

Query: 323 IAENIESLLRQNAGL 337
           IA  IE+ +R++ G+
Sbjct: 321 IAREIENKVRESLGI 335


>gi|224542090|ref|ZP_03682629.1| hypothetical protein CATMIT_01265 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525023|gb|EEF94128.1| hypothetical protein CATMIT_01265 [Catenibacterium mitsuokai DSM
           15897]
          Length = 344

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 192/335 (57%), Positives = 263/335 (78%), Gaps = 2/335 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   K+  + D   AL+ A+SQI++ +GKG++M+LG + ++   ++V+ SGSL LD ALG
Sbjct: 3   MAKEKKSAVKDTDAALDDAISQIEKKFGKGSVMRLGDRTAV--DVDVIPSGSLTLDKALG 60

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG+PKGRI+EIYGPESSGKTTL LH IAQ+QK GG  AF+DAEHA+D +YA+ LGVD+ 
Sbjct: 61  IGGYPKGRIIEIYGPESSGKTTLTLHAIAQAQKQGGKAAFIDAEHAIDPVYAKNLGVDID 120

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            L++SQPD+GEQALEI +MLVRSG +D+IVIDSVAAL P+ E++G+MG++  G+QARLMS
Sbjct: 121 ELILSQPDSGEQALEIAEMLVRSGVIDLIVIDSVAALVPQVELDGEMGDAAVGLQARLMS 180

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           +ALRKL+  ++++ C ++FINQ+R KIGVM+G+PETTTGG ALKFYSSVR++IRR   IK
Sbjct: 181 KALRKLSGVMNKTNCTVIFINQLREKIGVMYGNPETTTGGRALKFYSSVRVEIRRSEQIK 240

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
               I GN+  +KVVKNK+A PFK  + DI+YG+GIS  GE++DL V+  IV+KSGAW++
Sbjct: 241 QNGEIVGNKANIKVVKNKVAPPFKTTQVDIIYGKGISRDGEILDLAVEGDIVEKSGAWYA 300

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
           + G+++GQGREN+K FL E+  I   +E  ++   
Sbjct: 301 YNGEKIGQGRENAKNFLLEHPAIFAEVEEKVKAQL 335


>gi|157284489|gb|ABV31092.1| RecA [Vibrio cholerae O1]
          Length = 337

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 200/335 (59%), Positives = 264/335 (78%), Gaps = 2/335 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
            QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGK
Sbjct: 1   GQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGK 58

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGE ALEI D L
Sbjct: 59  TTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEPALEICDAL 118

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FI
Sbjct: 119 ARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFI 178

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVR DIRR G+IK+ + + GN+TR+KVVKNK+A
Sbjct: 179 NQIRMKIGVMFGNPETTTGGNALKFYASVRWDIRRTGAIKEGEEVVGNETRIKVVKNKIA 238

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
           +PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+ N+  +L+EN
Sbjct: 239 APFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKEN 298

Query: 321 IEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            EIA+ ++  LR+      +  L     +  DD +
Sbjct: 299 PEIAKTLDKKLREMLLNPENMQLIAETSSAADDVE 333


>gi|256827177|ref|YP_003151136.1| RecA protein [Cryptobacterium curtum DSM 15641]
 gi|256583320|gb|ACU94454.1| RecA protein [Cryptobacterium curtum DSM 15641]
          Length = 352

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 194/340 (57%), Positives = 254/340 (74%), Gaps = 1/340 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K L+    QI++ +G+G IM+LG      E + V+ +G+L LD ALGIGG P+GRI+
Sbjct: 6   EKEKMLKITTDQIEQRFGRGTIMKLGENDHSLE-VGVIPTGALPLDAALGIGGVPRGRII 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH +A++Q  GG  AF+DAEHALD +YA +LGVD+ +LLISQPDTG
Sbjct: 65  EIYGPESSGKTTLALHILAEAQALGGIAAFIDAEHALDPVYAARLGVDVDDLLISQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D ++IDSVAAL PRAEIEG++GE+  G+QARLMSQALRKL  S+
Sbjct: 125 EQALEICDMLVRSGAIDCVIIDSVAALVPRAEIEGEIGETTVGLQARLMSQALRKLAGSL 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           SRS    +FINQ+R KIG+MFG+PETTTGG ALKF+SSVR+D+RR   +K      GN+ 
Sbjct: 185 SRSNTTCIFINQLREKIGIMFGNPETTTGGRALKFFSSVRIDVRRCDYVKLNGETIGNRV 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R KVVKNK+A PF+Q EFD++YGEGIS  G ++D+ V+  I  KSGAW+++  +RLGQGR
Sbjct: 245 RAKVVKNKVAPPFRQAEFDLIYGEGISKTGCILDMAVECGIAKKSGAWYTYGEERLGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           E +K  L E+ ++ E IE+ +R+   +     +    +  
Sbjct: 305 EAAKHTLEEHPDLREEIEAKVREEYEIALPDQVASAEVTP 344


>gi|170664154|gb|ACB28496.1| RecA [Burkholderia cepacia]
          Length = 310

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 217/311 (69%), Positives = 270/311 (86%), Gaps = 1/311 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+R K
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRTK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGL 337
           IE+ +R++ G+
Sbjct: 300 IENRIRESLGV 310


>gi|157326897|gb|ABV44561.1| RecA [Burkholderia cenocepacia]
          Length = 319

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 220/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGLVA 339
           IE+ +R++ G+V+
Sbjct: 300 IENRIRESLGVVS 312


>gi|296803014|gb|ADH51583.1| DNA recombinase [Burkholderia contaminans]
          Length = 314

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 219/314 (69%), Positives = 271/314 (86%), Gaps = 1/314 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L
Sbjct: 1   QFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTL 59

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+
Sbjct: 60  QVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGS 119

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RM
Sbjct: 120 IDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRM 179

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++
Sbjct: 180 KIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRE 239

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
             FDI+YGE IS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA 
Sbjct: 240 AIFDILYGESISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAR 299

Query: 326 NIESLLRQNAGLVA 339
            IE+ +R++ G+V 
Sbjct: 300 EIENRIRESLGVVT 313


>gi|132238|sp|P17479|RECA_SERMA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|152849|gb|AAA26567.1| RecA protein [Serratia marcescens]
          Length = 354

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 215/353 (60%), Positives = 277/353 (78%), Gaps = 6/353 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+  GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQIMYGEGINSRGELVDLGVKHKMIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            N+  FL+EN  IA  ++  LR         L+      + DD + D+ +  E
Sbjct: 304 ANACNFLKENPAIAAELDKKLRDLLLHSGGELVAA----SGDDFEDDEAETSE 352


>gi|207366362|emb|CAQ58076.1| recombinase A [Agrobacterium tumefaciens]
          Length = 308

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 242/307 (78%), Positives = 280/307 (91%), Gaps = 1/307 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI+R +GKG IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKT
Sbjct: 1   QIERSFGKGXIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGEQALEITD LV
Sbjct: 60  TLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDTGEQALEITDTLV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+SKC+++FIN
Sbjct: 120 RSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSKCMVIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQTRVKVVKNKMA 
Sbjct: 180 QIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQTRVKVVKNKMAP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQGREN+K+FLR+N 
Sbjct: 240 PFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGRENAKMFLRDNX 299

Query: 322 EIAENIE 328
           E A  IE
Sbjct: 300 ETANEIE 306


>gi|296802994|gb|ADH51573.1| DNA recombinase [Burkholderia multivorans]
          Length = 311

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 219/312 (70%), Positives = 272/312 (87%), Gaps = 1/312 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGLV 338
           IE+ +R++ G+ 
Sbjct: 300 IENRIRESLGVA 311


>gi|157326929|gb|ABV44577.1| RecA [Burkholderia multivorans]
          Length = 309

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 219/310 (70%), Positives = 270/310 (87%), Gaps = 1/310 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           +QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGK
Sbjct: 1   AQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK 59

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD L
Sbjct: 60  TTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDAL 119

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FI
Sbjct: 120 VRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFI 179

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++
Sbjct: 180 NQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVS 239

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
            PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN
Sbjct: 240 PPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLREN 299

Query: 321 IEIAENIESL 330
            EIA  IE  
Sbjct: 300 PEIAREIEKR 309


>gi|225025099|ref|ZP_03714291.1| hypothetical protein EIKCOROL_01989 [Eikenella corrodens ATCC
           23834]
 gi|224942060|gb|EEG23269.1| hypothetical protein EIKCOROL_01989 [Eikenella corrodens ATCC
           23834]
          Length = 361

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 212/340 (62%), Positives = 269/340 (79%), Gaps = 6/340 (1%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKGAIM++       E +EV+S+GSLG+D+ALG+GG P+GRIVEI+GPESSGKT
Sbjct: 28  QIEKNFGKGAIMKM-DGSHQDENLEVISTGSLGVDLALGVGGLPRGRIVEIFGPESSGKT 86

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L TIAQ QK GG CAF+DAE+A D IYARKLGV ++ L++SQPDTGEQALEI DMLV
Sbjct: 87  TLCLETIAQCQKNGGVCAFIDAENAFDPIYARKLGVKVEELMVSQPDTGEQALEICDMLV 146

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG VD++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  I ++  ++VFIN
Sbjct: 147 RSGGVDMVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGHIKKTNTLVVFIN 206

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFGSPETTTGGNALKFY+SVRLDIR+   IK  D I GN+TRVKV+KNK+A 
Sbjct: 207 QIRMKIGVMFGSPETTTGGNALKFYASVRLDIRKGTPIKKGDDILGNETRVKVIKNKVAP 266

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PF+Q EFDI+YGEG+S  GELID G K  I+ KSGAW+S+ G ++GQG++N +++L+EN 
Sbjct: 267 PFRQAEFDILYGEGVSREGELIDWGDKVGIIKKSGAWYSYNGDKIGQGKDNVRVWLKENP 326

Query: 322 EIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           E+A  IE+ +R+  G+       E     +DD D +  + 
Sbjct: 327 EVAAEIEAQIRKEVGIN-----IEITEGQRDDTDGEQPEE 361


>gi|189462741|ref|ZP_03011526.1| hypothetical protein BACCOP_03438 [Bacteroides coprocola DSM 17136]
 gi|189430541|gb|EDU99525.1| hypothetical protein BACCOP_03438 [Bacteroides coprocola DSM 17136]
          Length = 348

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 205/324 (63%), Positives = 265/324 (81%), Gaps = 2/324 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  +K KAL+AA+ +I++ +GKG+IM++G      + +EV+ +GS+ L+ ALG+GG+PKG
Sbjct: 19  NNSEKLKALQAAMDKIEKSFGKGSIMKMGDNH--VQEVEVIPTGSIALNAALGVGGYPKG 76

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQP
Sbjct: 77  RIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDIDNLWISQP 136

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++  G+QARLMSQALRKLT
Sbjct: 137 DNGEQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNRVGLQARLMSQALRKLT 196

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           S+IS++    +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR+   IKD + I G
Sbjct: 197 SAISKTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRKGQPIKDGEDIIG 256

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           NQTRVK+VKNK+A PF++ EFDIM+GEGIS  GE+IDLG +  I+ KSG+W+S+   +LG
Sbjct: 257 NQTRVKIVKNKVAPPFRKAEFDIMFGEGISRSGEIIDLGAELGIIKKSGSWYSYNETKLG 316

Query: 308 QGRENSKIFLRENIEIAENIESLL 331
           QGR+ +K  +++N E+AE +E L+
Sbjct: 317 QGRDAAKQCIQDNPELAEELEGLI 340


>gi|293392772|ref|ZP_06637090.1| recombination protein A [Serratia odorifera DSM 4582]
 gi|291424631|gb|EFE97842.1| recombination protein A [Serratia odorifera DSM 4582]
          Length = 353

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 211/349 (60%), Positives = 274/349 (78%), Gaps = 2/349 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF IMYGEGI+  GEL+DLGVK  +++K+GAW+S+ G+++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQIMYGEGINSRGELVDLGVKHKMIEKAGAWYSYNGEKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
            N+  FL+EN  +A  ++  LR      ++           D+A+  + 
Sbjct: 304 ANACNFLKENPAVAAELDKKLRDLLLHSSNESAMATNEGVDDEAETSEE 352


>gi|199599610|ref|ZP_03212992.1| RecA/RadA recombinase [Lactobacillus rhamnosus HN001]
 gi|258507884|ref|YP_003170635.1| recombination protein RecA [Lactobacillus rhamnosus GG]
 gi|199589502|gb|EDY97626.1| RecA/RadA recombinase [Lactobacillus rhamnosus HN001]
 gi|257147811|emb|CAR86784.1| Protein recA [Lactobacillus rhamnosus GG]
 gi|259649211|dbj|BAI41373.1| recombinase RecA [Lactobacillus rhamnosus GG]
          Length = 350

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 188/345 (54%), Positives = 263/345 (76%), Gaps = 2/345 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   ++ +AL  AL +I++ +GKGAIM++G +      +  VSSGSL +D ALG+GG P+
Sbjct: 1   MAETERQEALATALKKIEKNFGKGAIMRMGDKVETR--VSAVSSGSLAIDDALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYGPESSGKTT+ALH +A  Q+ GGT A++DAE+A+D  YA  LGV++  LL+SQ
Sbjct: 59  GRIVEIYGPESSGKTTVALHAVAMVQQHGGTAAYIDAENAMDPKYAAALGVNIDELLLSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQ LEI D LV SGA+DI+V+DSVAAL PRAEIEGDMG++  G+QARLMSQALRKL
Sbjct: 119 PDTGEQGLEIADELVASGAIDILVVDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + +I+++K I +FINQ+R K+G++FG+PE T GG ALKFY++VR+++RR   IK+   I 
Sbjct: 179 SGAINKTKTIALFINQIREKVGIVFGNPEITPGGRALKFYATVRMEVRRSEQIKNGADII 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+T++KVVKNK+A PFK    DIMYG+GIS  GEL+D+ V+  I++K+G+W++++G+R+
Sbjct: 239 GNRTKIKVVKNKVAPPFKTAIVDIMYGQGISQSGELVDMAVEKDIIEKAGSWYAYQGERI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           GQGRE++K +L  + E+   IE  +R   G+  D ++ +  I T 
Sbjct: 299 GQGREHAKSYLETHEELRRTIEKQVRLAYGMSPDHVIDQADIETD 343


>gi|85858187|ref|YP_460389.1| recA protein [Syntrophus aciditrophicus SB]
 gi|123738761|sp|Q2LPL5|RECA_SYNAS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|85721278|gb|ABC76221.1| recA protein [Syntrophus aciditrophicus SB]
          Length = 343

 Score =  359 bits (921), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 209/339 (61%), Positives = 274/339 (80%), Gaps = 1/339 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D++KA++ A+SQI+R +GKG+IM+LG++  I E I V+ +G+L LDIALGIGG P+GRI+
Sbjct: 6   DRAKAVDLAISQIERQFGKGSIMRLGAKERI-EDIAVIPTGALSLDIALGIGGVPRGRII 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPES GKTTLALH IA++QK  G  AF+DAEHALD  YARK+GV+  +LLISQPDTG
Sbjct: 65  EIFGPESGGKTTLALHIIAEAQKRNGLAAFIDAEHALDVSYARKIGVNTDDLLISQPDTG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+DI+V+DSVAAL P+AEIEG+MG++  G+QARLMSQALRKLT SI
Sbjct: 125 EQALEIAETLVRSGALDILVVDSVAALVPKAEIEGEMGDAQMGLQARLMSQALRKLTGSI 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S   ++FINQ+RMKIGV FG+PETTTGGNALKFY+S+RLDIR+ GSIK    + G +T
Sbjct: 185 SKSNTTVIFINQLRMKIGVFFGNPETTTGGNALKFYASMRLDIRKSGSIKSGQDVIGMRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF++ EFDI++GEGIS  G+++DL  ++ IV+KSGAW+S+ G+R+GQGR
Sbjct: 245 KVKVVKNKVAPPFRETEFDILFGEGISKAGDILDLAAESGIVEKSGAWYSYGGERIGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
           +N++ FL+E+ +I   IE  +R   GL      QE    
Sbjct: 305 DNTRNFLKEHPDILVRIEEQVRSEHGLKPRLQEQEEPAK 343


>gi|148897679|emb|CAM18493.1| recombinase A [Ochrobactrum intermedium]
          Length = 299

 Score =  359 bits (921), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 237/300 (79%), Positives = 274/300 (91%), Gaps = 1/300 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           +AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG PKGRIVEIYGPE
Sbjct: 1   DAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLPKGRIVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALR LT+SISRS C+
Sbjct: 120 TDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRTLTASISRSGCL 179

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQTRVKVVK
Sbjct: 180 VIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQTRVKVVK 239

Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316
           NK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QRLGQGREN+K +
Sbjct: 240 NKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQY 299


>gi|304413368|ref|ZP_07394841.1| RecA/RadA recombinase [Candidatus Regiella insecticola LSR1]
 gi|304284211|gb|EFL92604.1| RecA/RadA recombinase [Candidatus Regiella insecticola LSR1]
          Length = 391

 Score =  359 bits (921), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 211/357 (59%), Positives = 276/357 (77%), Gaps = 6/357 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL+QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 36  NKKKALAAALTQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 93

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPD G
Sbjct: 94  EIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDNG 153

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG+MG++  G+ AR+MS+A+RK   ++
Sbjct: 154 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEMGDAHMGLAARMMSKAMRKFAGNL 213

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ + + G+ T
Sbjct: 214 NNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKNGEEVIGSDT 273

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I YGEGI+  GELI+LGVK  +++K+GAW+S+KG ++GQG+
Sbjct: 274 RVKVVKNKIAAPFKQAEFQIHYGEGINLNGELIELGVKHKLIEKAGAWYSYKGNKIGQGK 333

Query: 311 ENSKIFLRENIEIAENIESLLRQNA----GLVADSLLQEPAINTKDDADKDDTDNVE 363
            N+  +L+EN  I   ++  LR           D+    PA+     A+K++  + E
Sbjct: 334 ANASQYLKENEAIKSELDKTLRDMLLGGGSNATDADTAHPAVTESFIAEKNNETSEE 390


>gi|227529688|ref|ZP_03959737.1| recombination protein A [Lactobacillus vaginalis ATCC 49540]
 gi|227350478|gb|EEJ40769.1| recombination protein A [Lactobacillus vaginalis ATCC 49540]
          Length = 360

 Score =  359 bits (921), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 188/346 (54%), Positives = 264/346 (76%), Gaps = 2/346 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ A+ +I++ +GKG+IM++G    +   I  VSSGSL +D ALG+GG+P+GRIVE
Sbjct: 5   RKAALDVAIRKIEKNFGKGSIMRMGDAADM--KIATVSSGSLAIDKALGVGGYPRGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+AL  +A+ Q+ GGT A++DAE+ALD  YA  LGV++ +LL+SQPDTGE
Sbjct: 63  IYGPESSGKTTVALQAVAEVQRQGGTAAYIDAENALDPQYAEALGVNVDDLLLSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           + LEI D L+ SGAVD++V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I+
Sbjct: 123 EGLEIADALISSGAVDLVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGEIN 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++K I +FINQ+R K+GVMFG+PETTTGG ALKFYS++R++IRR   IK+  ++ GN+T+
Sbjct: 183 KTKTIAIFINQIREKVGVMFGNPETTTGGRALKFYSTIRMEIRRSEQIKNGTNVIGNRTK 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           +K+VKNK+A PFK+ E DIMYGEGIS  GEL+D+ V+  +V KSGAW+S+  +R+GQGRE
Sbjct: 243 IKIVKNKVAPPFKRAEVDIMYGEGISKTGELLDMAVEQDLVKKSGAWYSYGDERIGQGRE 302

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           N+K +L E+ +    + + +R+  G+         + N K   + +
Sbjct: 303 NAKNWLAEHPDSMAELMNKVREANGMEPLKDTANKSQNGKQSTNSE 348


>gi|70904882|gb|AAZ14019.1| RecA [Burkholderia cenocepacia]
          Length = 309

 Score =  359 bits (921), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 220/310 (70%), Positives = 270/310 (87%), Gaps = 1/310 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGP
Sbjct: 1   LAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALE
Sbjct: 60  ESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           ITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C
Sbjct: 120 ITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNC 179

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVV
Sbjct: 180 LVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVV 239

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ 
Sbjct: 240 KNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNARE 299

Query: 316 FLRENIEIAE 325
           FLREN EI  
Sbjct: 300 FLRENPEIRA 309


>gi|157326899|gb|ABV44562.1| RecA [Burkholderia cenocepacia]
          Length = 317

 Score =  359 bits (921), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 219/311 (70%), Positives = 271/311 (87%), Gaps = 1/311 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNARDFLRENPEIARE 299

Query: 327 IESLLRQNAGL 337
           IE+ +R++ G+
Sbjct: 300 IENRIRESLGV 310


>gi|325831354|ref|ZP_08164608.1| RecA protein [Eggerthella sp. HGA1]
 gi|325486608|gb|EGC89056.1| RecA protein [Eggerthella sp. HGA1]
          Length = 352

 Score =  359 bits (921), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 201/339 (59%), Positives = 259/339 (76%), Gaps = 1/339 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSK L+    QI+  +GKG+IM+ G  G     I V+ +G+L LD ALGIGG P+GR
Sbjct: 2   NEEKSKMLKLTTDQIETKFGKGSIMKFGEGGHDLN-IGVIPTGALPLDAALGIGGVPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVE+YGPESSGKTTLAL  IA++Q  GG  AF+DAEHALD +YA +LGVD+  +LISQPD
Sbjct: 61  IVEVYGPESSGKTTLALQIIAEAQAMGGIVAFIDAEHALDPVYAARLGVDIDEVLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DMLVRSGA+D +V+DSVAAL PRAEIEG++G++  G+QARLMSQALRKL  
Sbjct: 121 TGEQALEICDMLVRSGAIDAVVVDSVAALVPRAEIEGEIGDTTVGLQARLMSQALRKLAG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           S+S+S    +FINQ+R KIGVMFG+PETTTGG ALKF+SSVR+DIRR+ SIK    I GN
Sbjct: 181 SLSKSNTTCIFINQLREKIGVMFGNPETTTGGRALKFFSSVRIDIRRIDSIKKDGEIVGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + R KVVKNK+A PF+Q EFD+MYGEGIS  G ++D+ V+A +  KSGAW+++  +RLGQ
Sbjct: 241 RVRAKVVKNKVAPPFRQAEFDLMYGEGISREGCIVDMAVEAGVAKKSGAWYTYGEERLGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           GRE +K  L+EN ++ E +E+ +R++  +   +   E A
Sbjct: 301 GREAAKQTLKENPDLREELETKVRESFEIPIITRSTEEA 339


>gi|300727820|ref|ZP_07061201.1| RecA protein [Prevotella bryantii B14]
 gi|299774919|gb|EFI71530.1| RecA protein [Prevotella bryantii B14]
          Length = 339

 Score =  359 bits (921), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 209/336 (62%), Positives = 275/336 (81%), Gaps = 3/336 (0%)

Query: 1   MDYRKEMNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIAL 59
           M   +E +  + K KAL+AA+++I++ +GKG+IM++G +    E IEV+SSGS+ LD AL
Sbjct: 1   MAKEEETSAKEGKLKALQAAMAKIEKDFGKGSIMKMGDEK--IEDIEVISSGSIALDAAL 58

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           G+GG+PKGRI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+
Sbjct: 59  GVGGYPKGRIIEIYGPESSGKTTLAIHAIAEAQKNGGIAAFIDAEHAFDRFYAAKLGVDV 118

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
            NLLISQPD GEQAL+I D L+ S A+DI+V+DSVAALTP+AEIEGDMG++  G+QARLM
Sbjct: 119 DNLLISQPDNGEQALQIADQLISSSAIDILVVDSVAALTPKAEIEGDMGDNRVGLQARLM 178

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           SQALRKLTS+IS++    +FINQ+R KIG+MFG+PETTTGGNALKFY+SVRLDIRRV SI
Sbjct: 179 SQALRKLTSTISKTNTTCIFINQLREKIGIMFGNPETTTGGNALKFYASVRLDIRRVSSI 238

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           KD D + GNQ RVKV+KNK+A PF++ EF+I +GEGIS  GE++D+GV+  ++ KSG+WF
Sbjct: 239 KDGDQVIGNQVRVKVIKNKVAPPFRKAEFEITFGEGISKIGEIVDMGVEYGVIQKSGSWF 298

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
           S+ G +L QGR+ +K  L++N E+ E +E+L++QN 
Sbjct: 299 SYNGSKLAQGRDATKKLLKDNPELCEELETLIKQNM 334


>gi|313888267|ref|ZP_07821938.1| RecA protein [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845670|gb|EFR33060.1| RecA protein [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 353

 Score =  359 bits (921), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 216/338 (63%), Positives = 273/338 (80%), Gaps = 3/338 (0%)

Query: 5   KEMNIV-DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           KE N+  +K +AL   +S+I++ YG+G++M LG    +   IE + +GSL LDIALGIGG
Sbjct: 2   KESNLSKEKQEALHNVISKIEKQYGEGSVMILGEDVKL--DIESIPTGSLALDIALGIGG 59

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            PKGRI+EIYGPESSGKTTLALH +A++QK GGT AFVDAEHALD+ YA+ LGVD++NL+
Sbjct: 60  IPKGRIIEIYGPESSGKTTLALHMLAEAQKIGGTGAFVDAEHALDAGYAKNLGVDVENLI 119

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           ISQPDTGEQALEIT+ LVRS AVD+I+IDSVAAL P+AEI+GDMG +  G+QARLMSQAL
Sbjct: 120 ISQPDTGEQALEITEALVRSNAVDLIIIDSVAALVPKAEIDGDMGAAQIGLQARLMSQAL 179

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT +I++SKC +VFINQ+R K+G+MFG+PETTTGG ALKFYSSVRLDIR+  +IK  D
Sbjct: 180 RKLTGAINKSKCTVVFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDIRKSENIKKGD 239

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            I GN+ RVKVVKNK+A PF+Q EFDIMYG+GIS  G ++D+  +A I+ K+GAW+S+  
Sbjct: 240 EIIGNRVRVKVVKNKIAPPFRQAEFDIMYGKGISSVGNILDVAAEADIIKKAGAWYSYGE 299

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           +RLGQGRENSK FL EN E+ + IE  +R +  L+ D 
Sbjct: 300 ERLGQGRENSKDFLEENPELLKEIEHKVRVHYNLIEDD 337


>gi|295688601|ref|YP_003592294.1| recombination protein RecA [Caulobacter segnis ATCC 21756]
 gi|295430504|gb|ADG09676.1| recA protein [Caulobacter segnis ATCC 21756]
          Length = 356

 Score =  359 bits (921), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 233/347 (67%), Positives = 290/347 (83%), Gaps = 2/347 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
               DK +ALEAAL+QI R +GKG++M+LG +G +   +E VS+GSLGLDIALGIGG PK
Sbjct: 12  KEEGDKQRALEAALAQIDRAFGKGSVMKLGEKGKV--EMESVSTGSLGLDIALGIGGLPK 69

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E+YGPESSGKTTLALH +A+ QK GGT AFVDAEHALD  YA KLGV+L +LL+SQ
Sbjct: 70  GRIIEVYGPESSGKTTLALHVVAEVQKAGGTAAFVDAEHALDPSYAHKLGVNLDSLLVSQ 129

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEITD LVRSGAVDI+VIDSVAALTP+AEIEG+MG+SLPG+QARLMSQALRKL
Sbjct: 130 PDNGEQALEITDTLVRSGAVDIVVIDSVAALTPKAEIEGEMGDSLPGLQARLMSQALRKL 189

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+SI+++  I++FINQ+R KIGVM+GSPETTTGGNALKFY+SVRLDIRR GS+K +D I 
Sbjct: 190 TASINKANTIVIFINQIRHKIGVMYGSPETTTGGNALKFYASVRLDIRRTGSVKVRDEII 249

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN  RVKVVKNK+A PF++VEFDIMYGEGIS  GE+IDLGVKA I++K+G+WFS+  QR+
Sbjct: 250 GNNVRVKVVKNKVAPPFREVEFDIMYGEGISKLGEVIDLGVKAGIIEKAGSWFSYGSQRI 309

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           GQGR+N + FL+ N +IA +IE+ +R+++  + + LL        ++
Sbjct: 310 GQGRDNVREFLKNNPDIASSIEAAVRKSSQKIEEELLVGGPEEGDEE 356


>gi|215254337|gb|ACJ64161.1| recombinase A [Vibrio cholerae]
          Length = 331

 Score =  359 bits (921), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 201/333 (60%), Positives = 265/333 (79%), Gaps = 2/333 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTT
Sbjct: 1   IEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L R
Sbjct: 59  LTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALAR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 119 SGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 178

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+P
Sbjct: 179 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAP 238

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+ N+  +L+EN E
Sbjct: 239 FKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKENPE 298

Query: 323 IAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           IA+ ++  LR+      +  L     +  DD +
Sbjct: 299 IAKTLDKKLREMLLNPENMQLTGETASAADDVE 331


>gi|170664144|gb|ACB28491.1| RecA [Burkholderia cepacia]
 gi|170664146|gb|ACB28492.1| RecA [Burkholderia cepacia]
 gi|170664148|gb|ACB28493.1| RecA [Burkholderia cepacia]
 gi|170664152|gb|ACB28495.1| RecA [Burkholderia cepacia]
 gi|170664156|gb|ACB28497.1| RecA [Burkholderia cepacia]
 gi|170664158|gb|ACB28498.1| RecA [Burkholderia cepacia]
          Length = 310

 Score =  359 bits (921), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 218/311 (70%), Positives = 271/311 (87%), Gaps = 1/311 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGL 337
           IE+ +R++ G+
Sbjct: 300 IENRIRESLGV 310


>gi|148657226|ref|YP_001277431.1| recombinase A [Roseiflexus sp. RS-1]
 gi|166220674|sp|A5UXX8|RECA_ROSS1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|148569336|gb|ABQ91481.1| recA protein [Roseiflexus sp. RS-1]
          Length = 353

 Score =  359 bits (921), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 214/345 (62%), Positives = 273/345 (79%), Gaps = 1/345 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL AA+SQI R YGKG+IM++G   S    IEV+ +GS+ LDIALG+GG P+GR+
Sbjct: 5   PEKEKALAAAMSQIDRKYGKGSIMRMGEVSSKL-AIEVIPTGSIALDIALGVGGVPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLA H IA++QK GG  AF+DAEHA D +YA + GVD+ NLL+SQPD 
Sbjct: 64  VEIYGPESSGKTTLAQHIIAEAQKMGGIAAFIDAEHAFDPVYAARCGVDVNNLLVSQPDY 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + LVRS AVD++V+DSVAAL PRAEIEGDMG+SLPG+QARLMSQALRKL+ +
Sbjct: 124 GEQALEICEALVRSNAVDVVVVDSVAALVPRAEIEGDMGDSLPGLQARLMSQALRKLSGA 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S+ +++F+NQ+R+KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++K+     G++
Sbjct: 184 ISKSRAVVIFLNQLRLKIGVMFGSPETTTGGQALKFYASVRMDIRRIETLKNGQETIGSR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PF+Q EFDIM+ EGIS  G ++D+GV+  I+ KSGAWF     RLGQG
Sbjct: 244 TRVKVVKNKVAPPFRQAEFDIMHNEGISRAGNILDVGVELDIIRKSGAWFYLGDDRLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           REN+K FL EN  +A+ IE L+R +A     S++     +  +DA
Sbjct: 304 RENAKQFLNENPALADEIERLIRAHAMAAPISIVSPKEDDAVEDA 348


>gi|296803122|gb|ADH51637.1| DNA recombinase [Burkholderia contaminans]
          Length = 311

 Score =  359 bits (920), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 217/312 (69%), Positives = 270/312 (86%), Gaps = 1/312 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM++G  G   + I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L
Sbjct: 1   QFGKGSIMRMGD-GEAADNIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTL 59

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+
Sbjct: 60  QVIAELQKLGGTTAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGS 119

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D+IVIDSVAAL P+AEIEG+MG+SL G+QARLMSQALRKLT +I R+ C+++FINQ+RM
Sbjct: 120 IDMIVIDSVAALVPKAEIEGEMGDSLLGLQARLMSQALRKLTGTIKRTNCLVIFINQIRM 179

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++
Sbjct: 180 KIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRE 239

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
             FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA 
Sbjct: 240 AIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAR 299

Query: 326 NIESLLRQNAGL 337
            IE+ +R++ G+
Sbjct: 300 EIENRIRESLGV 311


>gi|296802990|gb|ADH51571.1| DNA recombinase [Burkholderia contaminans]
 gi|296803026|gb|ADH51589.1| DNA recombinase [Burkholderia contaminans]
 gi|296803038|gb|ADH51595.1| DNA recombinase [Burkholderia contaminans]
 gi|296803040|gb|ADH51596.1| DNA recombinase [Burkholderia contaminans]
 gi|296803046|gb|ADH51599.1| DNA recombinase [Burkholderia contaminans]
 gi|296803060|gb|ADH51606.1| DNA recombinase [Burkholderia contaminans]
 gi|296837357|gb|ADH59537.1| DNA recombinase [Burkholderia contaminans]
          Length = 310

 Score =  359 bits (920), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 219/311 (70%), Positives = 271/311 (87%), Gaps = 1/311 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGL 337
           IE+ +R++ G+
Sbjct: 300 IENRIRESLGV 310


>gi|296535683|ref|ZP_06897857.1| recombinase A [Roseomonas cervicalis ATCC 49957]
 gi|296263980|gb|EFH10431.1| recombinase A [Roseomonas cervicalis ATCC 49957]
          Length = 347

 Score =  359 bits (920), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 240/348 (68%), Positives = 297/348 (85%), Gaps = 1/348 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KAL+AALSQI+R +GKG+IM++G++    + +EV+ +GSLGLD+ LGIGG P+GRI
Sbjct: 1   MDKNKALDAALSQIERAFGKGSIMRMGAKQQS-DEVEVIPTGSLGLDLGLGIGGLPRGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH IA++QK GGTCAFVDAEHALD  YARKLGVD+ NLLISQPD 
Sbjct: 60  VEIYGPESSGKTTLALHAIAEAQKRGGTCAFVDAEHALDPGYARKLGVDVDNLLISQPDA 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++V+DSVAAL PRAE+EG+MG+S  G+ ARLMSQALRKLT S
Sbjct: 120 GEQALEIADTLVRSGAVDVLVVDSVAALVPRAELEGEMGDSHVGLHARLMSQALRKLTGS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++RS  +L+F+NQ+R+KIGVMFG+PETTTGGNALKFY+S+RL+IRRVG IKD++ + GNQ
Sbjct: 180 VARSNTLLIFLNQIRLKIGVMFGNPETTTGGNALKFYASIRLEIRRVGQIKDREEVVGNQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNKMA PF+QVEFDIMYGEG+S  GEL+DLGVKA +V+KSGAWFS   QR+GQG
Sbjct: 240 TRVKVVKNKMAPPFRQVEFDIMYGEGVSKVGELLDLGVKAGVVEKSGAWFSCDSQRIGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           REN+K FLR+N  +A++IE  +R  AGLVA +++  P   + D A  +
Sbjct: 300 RENAKQFLRDNPAMADSIEQRIRAQAGLVASAMMVGPDSESDDAAAAE 347


>gi|158339744|ref|YP_001520751.1| recombinase A [Acaryochloris marina MBIC11017]
 gi|158309985|gb|ABW31601.1| protein RecA [Acaryochloris marina MBIC11017]
          Length = 357

 Score =  359 bits (920), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 195/360 (54%), Positives = 265/360 (73%), Gaps = 5/360 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M  + EM   +K KAL+  +  +++ +GKGAIM+LG    +   IE +S+G+L LD+ALG
Sbjct: 1   MSAKTEM--TEKQKALDLVMKNVEKTFGKGAIMRLGDAARM--QIETISTGALPLDLALG 56

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG PKGR++E+YGPESSGKTT+ALH IA+ QK+GG  AFVDAEHALD +YA  LGVD+ 
Sbjct: 57  -GGLPKGRVIEVYGPESSGKTTVALHAIAEIQKSGGVAAFVDAEHALDPVYAAALGVDVS 115

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+ QPD+GE ALE+ D LVRS AVD++V+DSVAALTPRAEIEGDMG+S  G+QARLMS
Sbjct: 116 ELLVCQPDSGEMALEVVDQLVRSSAVDLVVVDSVAALTPRAEIEGDMGDSHMGLQARLMS 175

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRK+TS+I +S   ++F+NQ+R KIGV +GSPE TTGGNALKFY+SVRLDIRRV ++K
Sbjct: 176 QALRKITSNICKSGSTVIFLNQLRQKIGVTYGSPEVTTGGNALKFYASVRLDIRRVQTLK 235

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
               + G + +VKV KNK+A PFK  EFDI++G+GIS  G L+D+  +A ++ + GAW+S
Sbjct: 236 KGTEMYGIRAKVKVAKNKVAPPFKLAEFDILFGQGISTIGCLVDMAAEAEVIVRKGAWYS 295

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           ++G  +GQGREN+  +  ++ E A+ +E  +RQ   L AD          +D++   + +
Sbjct: 296 YEGDNIGQGRENTIQYFADHPEFAQAVEQQVRQRLALGADCAAHADTNGEEDESPLAEVE 355


>gi|319796544|ref|YP_004158184.1| reca protein [Variovorax paradoxus EPS]
 gi|315599007|gb|ADU40073.1| recA protein [Variovorax paradoxus EPS]
          Length = 370

 Score =  359 bits (920), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 224/333 (67%), Positives = 280/333 (84%), Gaps = 4/333 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR++EIYGPESSGKTT
Sbjct: 28  IEKQFGKGTIMRLGE-GEALEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTT 86

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA  QK  GTCAFVDAEHALD  YA+KLGV+L +LLISQPDTGEQALEI D LVR
Sbjct: 87  LTLQVIAAMQKQAGTCAFVDAEHALDVQYAQKLGVNLSDLLISQPDTGEQALEIVDSLVR 146

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IVIDSVAALTP+AEIEG+MG+SLPG+QARLMSQALRKLT++I ++ C+++FINQ
Sbjct: 147 SGAVDLIVIDSVAALTPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQ 206

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IK  D   GN+T+VKVVKNK++ P
Sbjct: 207 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGTIKKGDEAIGNETKVKVVKNKVSPP 266

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FK  EFDI++GEGIS  GE+ID+GV A IVDKSGAW+++ G+++GQGR+N++ FLREN E
Sbjct: 267 FKTAEFDILFGEGISREGEVIDMGVTAKIVDKSGAWYAYNGEKIGQGRDNAREFLRENPE 326

Query: 323 IAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           ++  IE+ +R++ G+    LL   A +  + A+
Sbjct: 327 LSREIENKVRESLGI---PLLAADAGSEPEKAE 356


>gi|313123309|ref|YP_004033568.1| recombinase a [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279872|gb|ADQ60591.1| recombinase A [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 369

 Score =  359 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 194/347 (55%), Positives = 271/347 (78%), Gaps = 2/347 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K  ALEAAL +I++ +GKGA+M++G +  +   I  V SGSL LD ALG+GG+P+
Sbjct: 1   MAKDEKQAALEAALKKIEKNFGKGAVMRMGEK--VDTQISTVPSGSLALDAALGVGGYPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+  L++SQ
Sbjct: 59  GRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDQLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL
Sbjct: 119 PNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + +I+++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK   ++ 
Sbjct: 179 SGTIAKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSTNVI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+     IVDK+GAW+S+ G+++
Sbjct: 239 GNRVKIKVVKNKVAPPFKVAEVDIMYGQGISQSGELLDMAADQDIVDKAGAWYSYHGEKI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           GQGREN+K +L E+ +++E+I++ +R+  G+ A+SL ++       +
Sbjct: 299 GQGRENAKQYLEEHPDVSEDIQTQVRKAYGIDAESLEEKENPEKVKE 345


>gi|325681372|ref|ZP_08160898.1| RecA protein [Ruminococcus albus 8]
 gi|324106862|gb|EGC01152.1| RecA protein [Ruminococcus albus 8]
          Length = 399

 Score =  359 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 197/372 (52%), Positives = 267/372 (71%), Gaps = 25/372 (6%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +  +K KALE A++ I++ +GKGAIM+LG   ++   +E + +GS+ LD+ALGIGG P+G
Sbjct: 19  DADEKKKALETAIAYIEKQFGKGAIMKLGDARAM--DVEAIPTGSMTLDMALGIGGVPRG 76

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EIYGPESSGKTT+ALH IA++QK GG  AF+D EHALD +YA+ LGVD+ ++L+SQP
Sbjct: 77  RIIEIYGPESSGKTTVALHIIAETQKMGGEVAFIDVEHALDPVYAQNLGVDIDSMLVSQP 136

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D+GEQALEI + L RSGA+D IVIDSVAA+  +AEI+G+MG++  G  ARLMSQA+RKLT
Sbjct: 137 DSGEQALEIAEALARSGAIDCIVIDSVAAMVTKAEIDGEMGDTHVGQLARLMSQAMRKLT 196

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           S +S+S    VFINQ+R KIGVM+G+PETT GG ALKFY+SVR+++RR   IKD   + G
Sbjct: 197 SVVSKSNTTCVFINQVREKIGVMYGNPETTPGGRALKFYASVRIEVRRGEQIKDGGEVIG 256

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+TR KVVKNK+A PFK+ EFDIMYG+G+S  GE++D  V   IV K GAWFS++  +LG
Sbjct: 257 NRTRCKVVKNKVAPPFKECEFDIMYGKGVSRVGEILDAAVDLGIVKKGGAWFSYEDYKLG 316

Query: 308 QGRENSKIFLRENIEIAENIESLL-----------------------RQNAGLVADSLLQ 344
           QGR+NSK FL ++ ++   IE  +                       + NAG  AD    
Sbjct: 317 QGRDNSKQFLLDHPDVMAEIEEKVKKQAAEALAAANKKSDKKSKLEEKANAGASADVDED 376

Query: 345 EPAINTKDDADK 356
           EP   ++++ ++
Sbjct: 377 EPTAPSEENFEE 388


>gi|296837377|gb|ADH59547.1| DNA recombinase [Burkholderia contaminans]
          Length = 310

 Score =  359 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 219/311 (70%), Positives = 271/311 (87%), Gaps = 1/311 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGL 337
           IE+ +R++ G+
Sbjct: 300 IENRIRESLGV 310


>gi|237785699|ref|YP_002906404.1| recombinase A [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758611|gb|ACR17861.1| recombinase A [Corynebacterium kroppenstedtii DSM 44385]
          Length = 379

 Score =  359 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 209/357 (58%), Positives = 275/357 (77%), Gaps = 7/357 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + KAL+ AL++I++ +GKGA+M+LG        I  +SSG++ +++ALGIGGFP+GR+VE
Sbjct: 19  RLKALDTALAKIEKDFGKGAVMRLGDDKR--PPISSISSGNIAINVALGIGGFPRGRVVE 76

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH IA++QK GG  AF+DAEHALD  YARKLGVD   LL++QPDTGE
Sbjct: 77  IYGPESSGKTTVALHAIAEAQKDGGIAAFIDAEHALDPEYARKLGVDTDALLVAQPDTGE 136

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DML+RSGA+ IIVIDSVAALTP+AEI+G+MG+S  G+QARLMSQALRK+T ++S
Sbjct: 137 QALEIADMLIRSGALAIIVIDSVAALTPKAEIDGEMGDSHVGLQARLMSQALRKMTGALS 196

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR DIRR+ ++KD   + GN+TR
Sbjct: 197 QSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRIQALKDGQDVIGNRTR 256

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           +KVVKNK++ PFK  EFDI+YGEGIS  G +IDLGV   I+ KSG+W++++G++LGQG+E
Sbjct: 257 LKVVKNKVSPPFKVSEFDILYGEGISREGSIIDLGVDYGIIKKSGSWYTYEGEQLGQGKE 316

Query: 312 NSKIFLRENIEIAENIESLLRQNAGL-----VADSLLQEPAINTKDDADKDDTDNVE 363
             + +L+ N ++A  IE  + + A +     V D    E   N+ DD   D   NV+
Sbjct: 317 KVRDYLKNNSDLAGTIEDKIMRAAKVGPYANVTDDDAAESESNSSDDDPIDVVPNVD 373


>gi|94676568|ref|YP_588661.1| recA protein [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|123081498|sp|Q1LTQ3|RECA_BAUCH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|94219718|gb|ABF13877.1| recA protein [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 350

 Score =  359 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 208/344 (60%), Positives = 274/344 (79%), Gaps = 4/344 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AALS I++ +G G+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALSLIEKQFGTGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +QK G  CAF+DAEHALD IYA+ LGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIATAQKEGKICAFIDAEHALDPIYAKNLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D+L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKLTS++
Sbjct: 124 EQALEICDVLTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHIGLAARMMSQAMRKLTSNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GS+K+ D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSVKEGDVVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ +F I YG+GI+  GEL+DLGVK ++++K+G+W+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQADFQITYGKGINIHGELVDLGVKNNLIEKAGSWYSYNGNKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
            N   FL+ + ++A  ++  LR+   L+ ++   E     +DD 
Sbjct: 304 NNVCNFLKYHPQLAAELDKKLREM--LLHNTTRTESNSLVRDDE 345


>gi|325684468|gb|EGD26632.1| recombination protein A [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 380

 Score =  359 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 194/349 (55%), Positives = 273/349 (78%), Gaps = 2/349 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K++   +K  ALEAAL +I++ +GKGA+M++G +  +   I  V SGSL LD ALG+GG+
Sbjct: 10  KKLAKDEKQAALEAALKKIEKNFGKGAVMRMGEK--VDTQISTVPSGSLALDAALGVGGY 67

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+  L++
Sbjct: 68  PRGRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDQLIL 127

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALR
Sbjct: 128 SQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 187

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KL+ +I+++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK   +
Sbjct: 188 KLSGTIAKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSTN 247

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + GN+ ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+     IVDK+GAW+S+ G+
Sbjct: 248 VIGNRVKIKVVKNKVAPPFKVAEVDIMYGQGISQSGELLDMAADQDIVDKAGAWYSYHGE 307

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           ++GQGREN+K +L E+ +++E+I++ +R+  G+ A+SL ++       +
Sbjct: 308 KIGQGRENAKQYLEEHPDVSEDIQTQVRKAYGIDAESLEEKENPEKVKE 356


>gi|33151633|ref|NP_872986.1| recombinase A [Haemophilus ducreyi 35000HP]
 gi|60393016|sp|Q7VNS7|RECA_HAEDU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|33147854|gb|AAP95375.1| RecA protein [Haemophilus ducreyi 35000HP]
          Length = 372

 Score =  359 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 221/356 (62%), Positives = 281/356 (78%), Gaps = 3/356 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K+++   K KAL AAL+QI++ +GKG+IM+LG   ++   IE VS+GS+GLD ALGIGG 
Sbjct: 14  KQIDPEQKEKALAAALAQIEKQFGKGSIMRLGDTQAL--DIEAVSTGSIGLDAALGIGGL 71

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P GRIVEIYGPESSGKTTL L  IAQ+Q+ G TCAF+DAEHALD +YARKLGVD+  LLI
Sbjct: 72  PMGRIVEIYGPESSGKTTLTLSVIAQAQRIGKTCAFIDAEHALDPVYARKLGVDIDALLI 131

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALR
Sbjct: 132 SQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSYMGLQARLMSQALR 191

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT++I  + C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G +KD D 
Sbjct: 192 KLTANIKATNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRSGVVKDGDE 251

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + G++T+VK+VKNK+A PF++V+FDIMYGEGI+   EL+ L      + K+GAWFS+ G 
Sbjct: 252 VVGSETKVKIVKNKVAPPFREVQFDIMYGEGIARMNELLILAEANGFIQKAGAWFSYNGT 311

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP-AINTKDDADKDDT 359
           ++GQG+ N+  +L+EN E+AE IE  +R    L  D    E   ++  D++D D+ 
Sbjct: 312 KIGQGKNNAIKWLKENPEVAEKIEQEIRNLLILTPDQPASEKLELDVNDESDFDEA 367


>gi|124265268|ref|YP_001019272.1| recombinase A [Methylibium petroleiphilum PM1]
 gi|166918713|sp|A2SBU8|RECA_METPP RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|124258043|gb|ABM93037.1| RecA protein [Methylibium petroleiphilum PM1]
          Length = 357

 Score =  359 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 217/316 (68%), Positives = 277/316 (87%), Gaps = 1/316 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG IM+LG  G + + IEVVS+GSLGLDIALG+GG P+GR++EIYGPESSGKTT
Sbjct: 23  IEKQFGKGTIMRLGE-GEVIDDIEVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTT 81

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK  GTCAF+DAEHALDS YA+KLGV+L+ LLISQPDTGEQALEI D LVR
Sbjct: 82  LTLQVIAEMQKLAGTCAFIDAEHALDSQYAQKLGVNLQELLISQPDTGEQALEIVDALVR 141

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG+VD+IV+DSVAALTP+AE+EG+MG+SLPG+QARLMSQALRKLT++I +S C+++FINQ
Sbjct: 142 SGSVDLIVVDSVAALTPKAELEGEMGDSLPGLQARLMSQALRKLTATIKKSNCMVIFINQ 201

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  + + GN+T+VKVVKNK++ P
Sbjct: 202 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKRGEEVIGNETKVKVVKNKVSPP 261

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FK  EFDI++GEG+S  GE+IDLGV A ++DKSGAW+++ G+++GQG++NS+ FLREN E
Sbjct: 262 FKTAEFDILFGEGVSREGEIIDLGVIAKVIDKSGAWYAYNGEKIGQGKDNSREFLRENPE 321

Query: 323 IAENIESLLRQNAGLV 338
           +A  IE+ +R++ G+ 
Sbjct: 322 LAHEIENKIRESLGVA 337


>gi|515814|emb|CAA37537.1| unnamed protein product [Bordetella pertussis]
          Length = 352

 Score =  359 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 225/332 (67%), Positives = 279/332 (84%), Gaps = 3/332 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           SQI++ +GKG+IM+ G    +   I+VVS+GSLGLDIALG+GG P   ++E+YGPESSGK
Sbjct: 22  SQIEKQFGKGSIMRYGDN-EVEHDIQVVSTGSLGLDIALGVGGLPA-AVIEVYGPESSGK 79

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA+ QK GGTCAFVDAEHALD  YA KLGV+L +LLISQPDTGEQALEITD L
Sbjct: 80  TTLTLQVIAEMQKLGGTCAFVDAEHALDVQYASKLGVNLTDLLISQPDTGEQALEITDAL 139

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT++I R+ C+++FI
Sbjct: 140 VRSGSVDLIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFI 199

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK  D + GN+TRVKVVKNK+A
Sbjct: 200 NQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKKGDEVVGNETRVKVVKNKVA 259

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
            PFKQ EFDIMYG GIS  GE+IDLGV+A++VDKSGAW+S+ G R+GQG++N + +L+E+
Sbjct: 260 PPFKQAEFDIMYGSGISREGEIIDLGVQANVVDKSGAWYSYSGNRIGQGKDNVREYLKEH 319

Query: 321 IEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
            E+A  IE+ +R+N G+V+      PA   +D
Sbjct: 320 KEMAIEIENKVRENQGIVS-RAATFPASEAED 350


>gi|152976145|ref|YP_001375662.1| recombinase A [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|189039589|sp|A7GRA9|RECA_BACCN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|152024897|gb|ABS22667.1| recA protein [Bacillus cytotoxicus NVH 391-98]
          Length = 343

 Score =  359 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 202/345 (58%), Positives = 270/345 (78%), Gaps = 2/345 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM++G Q      +  V SGSL LD+ALG+GG+P+GR
Sbjct: 1   MSDRQAALDMALKQIEKQFGKGSIMKMGEQAE--RKVSTVPSGSLSLDVALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPD
Sbjct: 59  IIEIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQ LEI + LVRSGA+DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQGLEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   +K  + I GN
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQLKQGNEIVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T+VKVVKNK+A PF+  E DIMYGEGIS  GE++D+  +  IV KSGAW+++  +RLGQ
Sbjct: 239 KTKVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYAYNEERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           GREN+K FL+EN +I + I   +R++ G+  DS  +    +T  D
Sbjct: 299 GRENAKQFLKENPDIRDEIAFFIREHHGIGEDSAPENMEESTTLD 343


>gi|229551732|ref|ZP_04440457.1| recombination protein A [Lactobacillus rhamnosus LMS2-1]
 gi|258539129|ref|YP_003173628.1| recombination protein RecA [Lactobacillus rhamnosus Lc 705]
 gi|229314911|gb|EEN80884.1| recombination protein A [Lactobacillus rhamnosus LMS2-1]
 gi|257150805|emb|CAR89777.1| Protein recA [Lactobacillus rhamnosus Lc 705]
          Length = 350

 Score =  359 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 187/345 (54%), Positives = 262/345 (75%), Gaps = 2/345 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   ++ +AL  AL +I++ +GKGAIM++G +      +  VSSGSL +D ALG+GG P+
Sbjct: 1   MAETERQEALATALKKIEKNFGKGAIMRMGDKVETR--VSAVSSGSLAIDDALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYGPESSGKTT+ALH +A  Q+ GGT A++DAE+A+D  YA  LGV++  LL+SQ
Sbjct: 59  GRIVEIYGPESSGKTTVALHAVAMVQQHGGTAAYIDAENAMDPKYAAALGVNIDELLLSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQ LEI D LV SGA+DI+V+DSVAAL PRAEIEGDMG++  G+QARLMSQALRKL
Sbjct: 119 PDTGEQGLEIADELVASGAIDILVVDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + +I+++K I +FINQ+R K+G++FG+PE T GG ALKFY++VR+++RR   IK+   I 
Sbjct: 179 SGAINKTKTIALFINQIREKVGIVFGNPEITPGGRALKFYATVRMEVRRSEQIKNGADII 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+T++KVVKNK+A PFK    DIMYG+GIS  GEL+D+ V+  I++K+G+W++++G+R+
Sbjct: 239 GNRTKIKVVKNKVAPPFKTAIVDIMYGQGISQSGELVDMAVEKDIIEKAGSWYAYQGERI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           GQGRE++K +L  + E+   IE  +R   G+  D ++ +    T 
Sbjct: 299 GQGREHAKSYLETHEELRRTIEKQVRLAYGMSPDHVIDQADTETD 343


>gi|237668259|ref|ZP_04528243.1| protein RecA [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|237656607|gb|EEP54163.1| protein RecA [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 359

 Score =  359 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 211/352 (59%), Positives = 275/352 (78%), Gaps = 7/352 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KA+E+A+S I++ +GKG++M+LG        ++ +S+G L LDIALGIGG PKGRI
Sbjct: 6   AEKLKAIESAMSNIEKQFGKGSVMKLGDHN--VTTMDAISTGCLDLDIALGIGGVPKGRI 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+AL   A++QK GG   ++DAEHALD  YA+K+GVD+++L+ISQPDT
Sbjct: 64  IEIYGPESSGKTTVALSIAAEAQKKGGAVGYIDAEHALDPSYAQKIGVDVESLIISQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQ LEI + LVRSGA+D++V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL  +
Sbjct: 124 GEQGLEIAEALVRSGAIDVLVVDSVAALVPKAEIEGEMGDSHIGLQARLMSQALRKLAGT 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I+++ C+ +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLDIRR+ SIK  DSI GN+
Sbjct: 184 INKTNCVAIFINQLREKVGVMFGSPETTTGGRALKFYASVRLDIRRIDSIKQGDSIIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKV+KNK+A PF+Q EFDIMY EGIS  G ++D+GVK  IV KSGAWFS+   RLGQG
Sbjct: 244 TRVKVMKNKVAPPFRQAEFDIMYNEGISRTGNVLDVGVKEEIVQKSGAWFSYGDVRLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLL-----QEPAINTKDDADK 356
           RENSK++L++N ++A +IE+ +R    L            E A++T    DK
Sbjct: 304 RENSKVYLKDNPDVALDIENQIRAKYNLPLAEAAPAEAKSESAVDTAPKEDK 355


>gi|150011039|gb|ABR57176.1| RecA [Staphylococcus xylosus]
          Length = 349

 Score =  359 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 200/348 (57%), Positives = 260/348 (74%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+  +  +++ +GKGA+M+LG   +           S+ LD ALG+GG+PKGRIV
Sbjct: 4   DRQKALDTVIKNMEKSFGKGAVMKLGDNEARKVSSVSSG--SVTLDNALGVGGYPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ Q+ GG  AF+DAEHALD +YA  LGVD++NL +SQPD G
Sbjct: 62  EIYGPESSGKTTVALHAIAEVQRNGGVAAFIDAEHALDPVYAEALGVDIQNLYLSQPDHG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI +  VRSGAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 122 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S    VFINQ+R K+GVMFG+PE T GG ALKFYSSVRL++RR   +K    I GN+T
Sbjct: 182 SKSNTTAVFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G R+GQG+
Sbjct: 242 KIKVVKNKVAPPFRVAEVDIMYGKGISKEGELIDLGVENEIVDKSGAWYSYNGDRMGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           EN K +L+EN  +   I+  LR+  G+    + +  A NT    D+++
Sbjct: 302 ENVKSYLKENPTVKAEIDRKLREKLGIFDGDVEEPEANNTATLLDEEE 349


>gi|30021871|ref|NP_833502.1| recombinase A [Bacillus cereus ATCC 14579]
 gi|228922494|ref|ZP_04085796.1| hypothetical protein bthur0011_34810 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228954057|ref|ZP_04116086.1| hypothetical protein bthur0006_34290 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228959986|ref|ZP_04121651.1| hypothetical protein bthur0005_34580 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229047465|ref|ZP_04193056.1| hypothetical protein bcere0027_34490 [Bacillus cereus AH676]
 gi|229111252|ref|ZP_04240806.1| hypothetical protein bcere0018_34980 [Bacillus cereus Rock1-15]
 gi|229129056|ref|ZP_04258029.1| hypothetical protein bcere0015_35010 [Bacillus cereus BDRD-Cer4]
 gi|229146351|ref|ZP_04274722.1| hypothetical protein bcere0012_34940 [Bacillus cereus BDRD-ST24]
 gi|229151980|ref|ZP_04280176.1| hypothetical protein bcere0011_35210 [Bacillus cereus m1550]
 gi|229191905|ref|ZP_04318875.1| hypothetical protein bcere0002_35620 [Bacillus cereus ATCC 10876]
 gi|296504278|ref|YP_003665978.1| recombinase A [Bacillus thuringiensis BMB171]
 gi|37537926|sp|Q81A16|RECA_BACCR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|29897427|gb|AAP10703.1| RecA protein [Bacillus cereus ATCC 14579]
 gi|228591456|gb|EEK49305.1| hypothetical protein bcere0002_35620 [Bacillus cereus ATCC 10876]
 gi|228631535|gb|EEK88168.1| hypothetical protein bcere0011_35210 [Bacillus cereus m1550]
 gi|228636984|gb|EEK93443.1| hypothetical protein bcere0012_34940 [Bacillus cereus BDRD-ST24]
 gi|228654293|gb|EEL10158.1| hypothetical protein bcere0015_35010 [Bacillus cereus BDRD-Cer4]
 gi|228672246|gb|EEL27536.1| hypothetical protein bcere0018_34980 [Bacillus cereus Rock1-15]
 gi|228723872|gb|EEL75226.1| hypothetical protein bcere0027_34490 [Bacillus cereus AH676]
 gi|228799729|gb|EEM46681.1| hypothetical protein bthur0005_34580 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228805623|gb|EEM52213.1| hypothetical protein bthur0006_34290 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228837208|gb|EEM82547.1| hypothetical protein bthur0011_34810 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|296325330|gb|ADH08258.1| recombinase A [Bacillus thuringiensis BMB171]
          Length = 343

 Score =  358 bits (919), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 208/342 (60%), Positives = 270/342 (78%), Gaps = 2/342 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG Q      +  VSSGSL LD+ALG+GG+P+GR
Sbjct: 1   MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERR--VSTVSSGSLALDVALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPD
Sbjct: 59  IIEIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   +K  + I GN
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T+VKVVKNK+A PF+  E DIMYGEGIS  GE++D+  +  IV KSGAW+S+  +RLGQ
Sbjct: 239 KTKVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           GRENSK FL+EN ++ E I   +R++ G+  DS  +    +T
Sbjct: 299 GRENSKQFLKENTDLREEIAFFIREHHGISEDSGAEGAEDST 340


>gi|240950340|ref|ZP_04754610.1| recombinase A [Actinobacillus minor NM305]
 gi|240295151|gb|EER45970.1| recombinase A [Actinobacillus minor NM305]
          Length = 375

 Score =  358 bits (919), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 223/359 (62%), Positives = 283/359 (78%), Gaps = 7/359 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           ++ +   + KAL+AAL+QI++ +GKG+IM+LG   ++   IE VS+GSLGLD+ALGIGG 
Sbjct: 17  RQTDPEQRKKALDAALAQIEKQFGKGSIMKLGQTQNL--DIEAVSTGSLGLDMALGIGGL 74

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P GRIVEI+GPESSGKTTL L TIAQ+QK G TCAF+DAEHALD +YARKLGV+  +LLI
Sbjct: 75  PMGRIVEIFGPESSGKTTLTLSTIAQAQKAGKTCAFIDAEHALDPVYARKLGVNTDDLLI 134

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALR
Sbjct: 135 SQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALR 194

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT +I  + C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G +KD D+
Sbjct: 195 KLTGNIKNTNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGVVKDGDN 254

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           I G++T+VKVVKNK+A PF++V+FDIMYGEGI+   EL+ L  K   + K+GAWFS++G 
Sbjct: 255 IIGSETKVKVVKNKVAPPFREVQFDIMYGEGIARTNELLILAEKQGFIKKAGAWFSYEGD 314

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           ++GQG+ N+  +L E+ E+A  IE+ LR+             A+   D+ D D  D VE
Sbjct: 315 KIGQGKNNAIKWLNEHPEVASKIEADLRELF-----MKNPNTALALDDEKDSDAEDVVE 368


>gi|313890419|ref|ZP_07824050.1| RecA protein [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121262|gb|EFR44370.1| RecA protein [Streptococcus pseudoporcinus SPIN 20026]
          Length = 380

 Score =  358 bits (919), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 204/352 (57%), Positives = 267/352 (75%), Gaps = 6/352 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  DRRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAASLGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+R    IK     KDS  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRGNTQIKGTGEQKDSNI 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK  E +IMYGEGIS  GELI +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELIKIASDLDIIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           GQG EN+K FL ++ +I E I+  +R   GL+ D L QE  +    D   D+
Sbjct: 316 GQGSENAKKFLADHPDIFEEIDHKVRVKVGLLEDDLEQEEVVEPTLDQSTDE 367


>gi|218235829|ref|YP_002368582.1| recombinase A [Bacillus cereus B4264]
 gi|226737751|sp|B7HDQ4|RECA_BACC4 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|218163786|gb|ACK63778.1| protein RecA [Bacillus cereus B4264]
          Length = 343

 Score =  358 bits (919), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 208/342 (60%), Positives = 269/342 (78%), Gaps = 2/342 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG Q      +  VSSGSL LD+ALG+GG+P+GR
Sbjct: 1   MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERR--VSTVSSGSLALDVALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPD
Sbjct: 59  IIEIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   +K  + I GN
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T+VKVVKNK+A PF+  E DIMYGEGIS  GE++D+  +  IV KSGAW+S+  +RLGQ
Sbjct: 239 KTKVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           GRENSK FL+EN ++ E I   +R++ G+  DS  +     T
Sbjct: 299 GRENSKQFLKENTDLREEIAFFIREHHGISEDSGAEGVEDPT 340


>gi|239818153|ref|YP_002947063.1| recA protein [Variovorax paradoxus S110]
 gi|239804730|gb|ACS21797.1| recA protein [Variovorax paradoxus S110]
          Length = 375

 Score =  358 bits (919), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 218/315 (69%), Positives = 274/315 (86%), Gaps = 1/315 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG IM+LG  G   E ++VVS+GSLGLDIALG+GG P+GR++EIYGPESSGKTT
Sbjct: 28  IEKQFGKGTIMRLGE-GEALEDVQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTT 86

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IAQ QK  GTCAFVDAEHALD  YA+KLGV+L +LLISQPDTGEQALEI D LVR
Sbjct: 87  LTLQVIAQMQKQAGTCAFVDAEHALDVQYAQKLGVNLSDLLISQPDTGEQALEIVDSLVR 146

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AEIEG+MG+SLPG+QARLMSQALRKLT++I ++ C+++FINQ
Sbjct: 147 SGAVDLIVVDSVAALTPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQ 206

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IK  D   GN+T+VKVVKNK++ P
Sbjct: 207 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGTIKKGDEAIGNETKVKVVKNKVSPP 266

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FK  EFDI++GEGIS  GE+ID+GV A I+DKSGAW+++ G+++GQGR+N++ FLREN E
Sbjct: 267 FKTAEFDILFGEGISREGEIIDMGVNAKILDKSGAWYAYNGEKIGQGRDNAREFLRENPE 326

Query: 323 IAENIESLLRQNAGL 337
           ++  IE+ +R++ G+
Sbjct: 327 LSREIENKVRESLGI 341


>gi|215254335|gb|ACJ64160.1| recombinase A [Vibrio cholerae]
 gi|223047500|gb|ACM79823.1| recombinase A [Vibrio cholerae]
 gi|223047502|gb|ACM79824.1| recombinase A [Vibrio cholerae]
          Length = 331

 Score =  358 bits (919), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 201/333 (60%), Positives = 265/333 (79%), Gaps = 2/333 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTT
Sbjct: 1   IEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L R
Sbjct: 59  LTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALAR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 119 SGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 178

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+P
Sbjct: 179 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAP 238

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+ N+  +L+EN E
Sbjct: 239 FKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKENPE 298

Query: 323 IAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           IA+ ++  LR+      +  L     +  DD +
Sbjct: 299 IAKTLDKKLREMLLNPENMQLIAETSSAADDVE 331


>gi|294672854|ref|YP_003573470.1| RecA protein [Prevotella ruminicola 23]
 gi|2500093|sp|Q59717|RECA_PRER2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|1420927|gb|AAC44506.1| RecA [Prevotella ruminicola]
 gi|294472544|gb|ADE81933.1| RecA protein [Prevotella ruminicola 23]
          Length = 340

 Score =  358 bits (919), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 207/337 (61%), Positives = 269/337 (79%), Gaps = 5/337 (1%)

Query: 1   MDYRKEMNIV---DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDI 57
           M   K+  +    +K KAL+AA+S+I++ YGKG+IM++G +    + +EV+ +GS+GL+ 
Sbjct: 1   MAKEKDEALSPQQEKLKALQAAMSKIEKDYGKGSIMRMGDEQ--IDNVEVIPTGSIGLNA 58

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG+GG+PKGRI+EIYGPESSGKTTLA+H IA+ QK GG  AF+DAEHA D  YA  LGV
Sbjct: 59  ALGVGGYPKGRIIEIYGPESSGKTTLAIHAIAECQKNGGIAAFIDAEHAFDRFYAAHLGV 118

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           D++NL ISQPD GEQALEI D L+RS A+DIIVIDSVAALTP+ EIEGDMG+S  G+QAR
Sbjct: 119 DVENLYISQPDNGEQALEIADQLIRSSAIDIIVIDSVAALTPKKEIEGDMGDSAVGLQAR 178

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           LMSQALRKLTS+IS++    +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR+V 
Sbjct: 179 LMSQALRKLTSTISKTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRKVT 238

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           +IKD D+I GNQ RVKV+KNK+A PF++ EF+I +GEGIS  GE++DLGV+  I+ KSG+
Sbjct: 239 AIKDGDNIIGNQVRVKVIKNKVAPPFRKAEFEITFGEGISKIGEIVDLGVEYEIIKKSGS 298

Query: 298 WFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
           WFS+   +L QGR+  K  L++N E+ E +E+ + + 
Sbjct: 299 WFSYGDSKLAQGRDAVKALLKDNPELCEELEAKIMEA 335


>gi|170664174|gb|ACB28506.1| RecA [Burkholderia pyrrocinia]
 gi|170664178|gb|ACB28508.1| RecA [Burkholderia pyrrocinia]
          Length = 310

 Score =  358 bits (919), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 219/311 (70%), Positives = 271/311 (87%), Gaps = 1/311 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+V
Sbjct: 60  VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGL 337
           IE+ +R++ G+
Sbjct: 300 IENRIRESLGV 310


>gi|157369086|ref|YP_001477075.1| recombinase A [Serratia proteamaculans 568]
 gi|166918716|sp|A8GA07|RECA_SERP5 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|157320850|gb|ABV39947.1| recA protein [Serratia proteamaculans 568]
          Length = 353

 Score =  358 bits (919), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 210/349 (60%), Positives = 273/349 (78%), Gaps = 2/349 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINSRGELVDLGVKHKMIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
            N+  FL+EN  +A  ++  LR         L+        D+A+  + 
Sbjct: 304 ANACNFLKENPAVAAELDKRLRDLLLHSNGELVAATNEGFDDEAETSEE 352


>gi|166079853|gb|ABY81648.1| recombinase A [Staphylococcus lugdunensis]
          Length = 320

 Score =  358 bits (919), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 195/322 (60%), Positives = 254/322 (78%), Gaps = 2/322 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKGA+M+LG        +  VS+GS+ LD ALG+GG+PKGRI+E+YGPESSGKTT+
Sbjct: 1   EKSFGKGAVMKLGENKDRR--VSSVSTGSVTLDHALGVGGYPKGRIIEVYGPESSGKTTV 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALH IA+ QK GG  AF+DAEHALD +YA  LGVD+ NL +SQPD GEQ LEI +  VRS
Sbjct: 59  ALHAIAEVQKNGGIAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHGEQGLEIAEAFVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVDI+++DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+++IS+S    +FINQ+
Sbjct: 119 GAVDIVIVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSAAISKSNTTAIFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T++KVVKNK+A PF
Sbjct: 179 REKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRTKIKVVKNKVAPPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           K  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G+R+GQG+EN K FL+EN ++
Sbjct: 239 KVAEVDIMYGQGISREGELIDLGVQYDIVDKSGAWYSYNGERMGQGKENVKQFLKENPQL 298

Query: 324 AENIESLLRQNAGLVADSLLQE 345
            + I+  LR+  G+    + ++
Sbjct: 299 EDEIDRKLREKLGIFDGDVEEK 320


>gi|170664150|gb|ACB28494.1| RecA [Burkholderia cepacia]
          Length = 310

 Score =  358 bits (919), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 217/311 (69%), Positives = 270/311 (86%), Gaps = 1/311 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++   LISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPEPLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGL 337
           IE+ +R++ G+
Sbjct: 300 IENRIRESLGV 310


>gi|259501046|ref|ZP_05743948.1| recombination protein A [Lactobacillus iners DSM 13335]
 gi|302190505|ref|ZP_07266759.1| recombinase A [Lactobacillus iners AB-1]
 gi|309804581|ref|ZP_07698646.1| RecA protein [Lactobacillus iners LactinV 09V1-c]
 gi|309806995|ref|ZP_07700977.1| RecA protein [Lactobacillus iners LactinV 03V1-b]
 gi|309810010|ref|ZP_07703857.1| RecA protein [Lactobacillus iners SPIN 2503V10-D]
 gi|312870696|ref|ZP_07730804.1| RecA protein [Lactobacillus iners LEAF 3008A-a]
 gi|312872582|ref|ZP_07732650.1| RecA protein [Lactobacillus iners LEAF 2062A-h1]
 gi|312874360|ref|ZP_07734391.1| RecA protein [Lactobacillus iners LEAF 2052A-d]
 gi|312874818|ref|ZP_07734837.1| RecA protein [Lactobacillus iners LEAF 2053A-b]
 gi|315653894|ref|ZP_07906810.1| recombination protein A [Lactobacillus iners ATCC 55195]
 gi|325911397|ref|ZP_08173809.1| RecA protein [Lactobacillus iners UPII 143-D]
 gi|325913184|ref|ZP_08175554.1| RecA protein [Lactobacillus iners UPII 60-B]
 gi|329920431|ref|ZP_08277163.1| protein RecA [Lactobacillus iners SPIN 1401G]
 gi|259167740|gb|EEW52235.1| recombination protein A [Lactobacillus iners DSM 13335]
 gi|308165973|gb|EFO68191.1| RecA protein [Lactobacillus iners LactinV 09V1-c]
 gi|308166615|gb|EFO68812.1| RecA protein [Lactobacillus iners LactinV 03V1-b]
 gi|308169650|gb|EFO71696.1| RecA protein [Lactobacillus iners SPIN 2503V10-D]
 gi|311089563|gb|EFQ47988.1| RecA protein [Lactobacillus iners LEAF 2053A-b]
 gi|311090126|gb|EFQ48539.1| RecA protein [Lactobacillus iners LEAF 2052A-d]
 gi|311091944|gb|EFQ50320.1| RecA protein [Lactobacillus iners LEAF 2062A-h1]
 gi|311093807|gb|EFQ52143.1| RecA protein [Lactobacillus iners LEAF 3008A-a]
 gi|315488590|gb|EFU78236.1| recombination protein A [Lactobacillus iners ATCC 55195]
 gi|325476747|gb|EGC79901.1| RecA protein [Lactobacillus iners UPII 143-D]
 gi|325477605|gb|EGC80747.1| RecA protein [Lactobacillus iners UPII 60-B]
 gi|328936107|gb|EGG32560.1| protein RecA [Lactobacillus iners SPIN 1401G]
          Length = 345

 Score =  358 bits (918), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 186/347 (53%), Positives = 262/347 (75%), Gaps = 2/347 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K  ALE AL +I++ +GKGA+M++G +  +   I  +S+GS+ LD ALG+GG+P+
Sbjct: 1   MAKDEKKAALELALKKIEKNFGKGAVMRMGEK--VDTKISTISTGSIALDTALGVGGYPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQ
Sbjct: 59  GRIIEVYGPESSGKTTVALHAVAEVQKNGGTAAYIDAENAMDPAYAEALGVDIDSLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL
Sbjct: 119 PNTGEEGLQIADTLISSGAIDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + +IS++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++R+   IK      
Sbjct: 179 SGNISKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRKSEQIKQGSDPI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G++ ++KVVKNK+A PFK    DIMYG GIS  GEL+D+ V   IV+KSGAW+S+   R+
Sbjct: 239 GSRVKIKVVKNKVAPPFKVATVDIMYGIGISKSGELLDMAVDKDIVNKSGAWYSYGDDRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           GQGREN+K +L E+ +I   I   +RQ  G+      ++ + +T+ +
Sbjct: 299 GQGRENAKQYLEEHPDIFREINDKVRQAYGIDNKESDEDSSEDTEQE 345


>gi|328955571|ref|YP_004372904.1| RecA protein [Coriobacterium glomerans PW2]
 gi|328455895|gb|AEB07089.1| RecA protein [Coriobacterium glomerans PW2]
          Length = 359

 Score =  358 bits (918), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 199/341 (58%), Positives = 262/341 (76%), Gaps = 1/341 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            ++ K ++   ++I++ +G G+IM+ G  G   E +E +S+G+L LD ALGIGG P+GRI
Sbjct: 18  AERDKMIDITRAEIEKKFGTGSIMRFGDGGPQLE-VEAISTGALALDAALGIGGVPRGRI 76

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTL+L  +A++Q  GG  AF+DAEHALD  YA ++GVD+  +LISQPDT
Sbjct: 77  IEIYGPESSGKTTLSLEILAEAQAAGGVVAFIDAEHALDPAYAARIGVDIDEVLISQPDT 136

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+D +VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL  S
Sbjct: 137 GEQALEICDMLIRSGAIDAVVIDSVAALVPRAEIEGEMGDTTVGLQARLMSQALRKLAGS 196

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +S+SK + +FINQ+R KIGVMFG+PETT GG ALKF+SSVR+DIRR+ SIK+   + GN+
Sbjct: 197 LSKSKTMCIFINQLREKIGVMFGNPETTPGGRALKFFSSVRIDIRRIDSIKNGQEVVGNR 256

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            R KVVKNK+A+PF+  EFDIMYG GIS  G ++D+GV+  IV+KSGAW++++ +RLGQG
Sbjct: 257 VRAKVVKNKVAAPFRSAEFDIMYGTGISKEGSILDMGVEFEIVNKSGAWYTYESERLGQG 316

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           RE +K FLR + E+AE IE  +R   GL         A+  
Sbjct: 317 REAAKEFLRVHPELAEEIEGKVRVACGLDFSDESTGDAVEV 357


>gi|296803044|gb|ADH51598.1| DNA recombinase [Burkholderia contaminans]
          Length = 309

 Score =  358 bits (918), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 219/310 (70%), Positives = 270/310 (87%), Gaps = 1/310 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAG 336
           IE+ +R++ G
Sbjct: 300 IENRIRESLG 309


>gi|256544708|ref|ZP_05472080.1| RecA protein [Anaerococcus vaginalis ATCC 51170]
 gi|256399597|gb|EEU13202.1| RecA protein [Anaerococcus vaginalis ATCC 51170]
          Length = 356

 Score =  358 bits (918), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 207/337 (61%), Positives = 262/337 (77%), Gaps = 3/337 (0%)

Query: 1   MDYRKEMNIV-DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIAL 59
           M   KE N   DK KAL  A   I++ YGKGAIM++G    +   + V+ +G++ LDIAL
Sbjct: 1   MAKEKEKNTDNDKEKALSQAFKNIEKKYGKGAIMKMGEAPKV--DVTVIPTGAINLDIAL 58

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           G+GG P+GR++EI+GPESSGKTTL LH IA+ QK G TCAF+DAEHA+D+ YA+KLGV++
Sbjct: 59  GVGGLPRGRVIEIFGPESSGKTTLTLHCIAEDQKLGNTCAFIDAEHAMDAEYAKKLGVNI 118

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
             L++SQPDTGEQAL+I + LVRSGAVD+IV+DSVAAL P+AEIEG MG+S  G+QARLM
Sbjct: 119 DELILSQPDTGEQALDIAESLVRSGAVDLIVVDSVAALVPKAEIEGQMGDSHMGLQARLM 178

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           SQALR+LT  IS++   ++FINQ+R KIGVMFG+PETTTGG ALKFYSSVRLDIRR+  I
Sbjct: 179 SQALRRLTGIISKTNTTVIFINQLREKIGVMFGNPETTTGGKALKFYSSVRLDIRRIKGI 238

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           +  D   GN+TRVKVVKNK+A PFK VEFDIMYG+GIS  G ++D  V   IV+K+G+W+
Sbjct: 239 QQGDDYIGNRTRVKVVKNKVAPPFKVVEFDIMYGQGISKSGVILDSAVDEDIVEKAGSWY 298

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAG 336
           S+ G++LGQGREN K +L EN +I   IE  LR+N  
Sbjct: 299 SYNGEKLGQGRENVKTYLEENEDILHEIEEKLRENIN 335


>gi|325279276|ref|YP_004251818.1| Protein recA [Odoribacter splanchnicus DSM 20712]
 gi|324311085|gb|ADY31638.1| Protein recA [Odoribacter splanchnicus DSM 20712]
          Length = 350

 Score =  358 bits (918), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 214/349 (61%), Positives = 271/349 (77%), Gaps = 3/349 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           KE N+ +K KAL+  L +I++ +GKG+IM+LG      E I V+ SGS+ LD ALG+GG+
Sbjct: 4   KETNL-EKLKALQLTLDKIEKNFGKGSIMKLGDNQ--VENIPVIPSGSIALDKALGVGGY 60

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGR++EIYGPESSGKTTLA+H IA++QK GG  A +DAEHA D  YA KLGVD++NL I
Sbjct: 61  PKGRVIEIYGPESSGKTTLAIHAIAEAQKQGGIAAIIDAEHAFDRSYAEKLGVDVENLFI 120

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI D L+RS A+DIIVIDSVAALTP+AEIEG+MG+S+ G+QARLMSQALR
Sbjct: 121 SQPDNGEQALEIADQLIRSAAIDIIVIDSVAALTPKAEIEGNMGDSVMGLQARLMSQALR 180

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLTS+IS++    +FINQ+R KIGVMFG+PETTTGGNALKFYSSVRLDIR++G IKD + 
Sbjct: 181 KLTSTISKTNTCCIFINQLRDKIGVMFGNPETTTGGNALKFYSSVRLDIRKIGPIKDGEE 240

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           I GN TRVKVVKNK+A PF++ EFDIMYGEGIS  GE++DLGV+ +++ KSG+WFS+   
Sbjct: 241 ILGNHTRVKVVKNKVAPPFRKAEFDIMYGEGISLSGEIVDLGVECNVIKKSGSWFSYGEN 300

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           +LGQGRE  K  + +N E+AE ++  +        D      + N + D
Sbjct: 301 KLGQGRETVKQLIMDNPELAEELKQKIVATFNGKTDEPELAESANEETD 349


>gi|323344367|ref|ZP_08084592.1| recombination protein A [Prevotella oralis ATCC 33269]
 gi|323094494|gb|EFZ37070.1| recombination protein A [Prevotella oralis ATCC 33269]
          Length = 343

 Score =  358 bits (918), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 210/323 (65%), Positives = 267/323 (82%), Gaps = 2/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+AA+S+I++ +GKG+IM++G +    E +EV+ +GS+GLD ALG+GG+P+GRI+E
Sbjct: 18  KLKALQAAMSKIEKDFGKGSIMRMGDEQ--IENVEVIPTGSIGLDAALGVGGYPRGRIIE 75

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD GE
Sbjct: 76  IYGPESSGKTTLALHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDNGE 135

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RS A+DI+VIDSVAALTP+ EIEGDMG+S  G+QARLMSQALRKLT +IS
Sbjct: 136 QALEIADQLIRSSAIDILVIDSVAALTPKKEIEGDMGDSAVGLQARLMSQALRKLTGTIS 195

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR++ SIKD D I GNQ R
Sbjct: 196 KTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRKITSIKDGDQIVGNQVR 255

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF++ EF+I +GEGIS  GEL+DLGV+ +I+ KSG+WFS+ G +L QGR+
Sbjct: 256 VKVVKNKVAPPFRKAEFEIPFGEGISKVGELLDLGVEFNIIQKSGSWFSYNGSKLAQGRD 315

Query: 312 NSKIFLRENIEIAENIESLLRQN 334
            +K  L++N E+ E +ES ++Q 
Sbjct: 316 ATKTLLKDNPELCEELESQIKQA 338


>gi|160872478|ref|ZP_02062610.1| protein RecA [Rickettsiella grylli]
 gi|159121277|gb|EDP46615.1| protein RecA [Rickettsiella grylli]
          Length = 351

 Score =  358 bits (918), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 221/342 (64%), Positives = 279/342 (81%), Gaps = 4/342 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + KAL+ ALSQI++ +G+GA+M+LG    +   ++V+S+GSLGLDIALGIGG P+GRIVE
Sbjct: 8   REKALKMALSQIKKQHGEGAVMRLGDSSRV--SVDVISTGSLGLDIALGIGGLPRGRIVE 65

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL L TIA+ QK GG  AFVDAEHALD+ YA KLGV   +LL+SQPDTGE
Sbjct: 66  IYGPESSGKTTLTLQTIAECQKMGGVAAFVDAEHALDANYAEKLGVKKDDLLVSQPDTGE 125

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DMLVRS A+DIIV+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRKL  +I 
Sbjct: 126 QALEIVDMLVRSNAIDIIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKLAGNIK 185

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           RS  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK  D + GN+TR
Sbjct: 186 RSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKKSDEVIGNETR 245

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PFKQ EF+I+Y +GI   GE++DLGV   ++DK+GAW+S++G+R+GQG++
Sbjct: 246 VKVVKNKVAPPFKQAEFEILYNQGICHRGEIVDLGVAQGLIDKAGAWYSYQGERIGQGKD 305

Query: 312 NSKIFLRENIEIAENIESLLRQNA--GLVADSLLQEPAINTK 351
           N K FLR+ IE+ + IE+ +R+N       +S  + P + T+
Sbjct: 306 NVKQFLRDRIELCQQIETEIRKNLLGNSTKESRRETPELETE 347


>gi|257791370|ref|YP_003181976.1| recA protein [Eggerthella lenta DSM 2243]
 gi|317490511|ref|ZP_07948990.1| recA bacterial DNA recombination protein [Eggerthella sp.
           1_3_56FAA]
 gi|257475267|gb|ACV55587.1| recA protein [Eggerthella lenta DSM 2243]
 gi|316910387|gb|EFV32017.1| recA bacterial DNA recombination protein [Eggerthella sp.
           1_3_56FAA]
          Length = 352

 Score =  358 bits (918), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 201/339 (59%), Positives = 259/339 (76%), Gaps = 1/339 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSK L+    QI+  +GKG+IM+ G  G     I V+ +G+L LD ALGIGG P+GR
Sbjct: 2   NEEKSKMLKLTTDQIETKFGKGSIMKFGEGGHDLN-IGVIPTGALPLDAALGIGGVPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVE+YGPESSGKTTLAL  IA++Q  GG  AF+DAEHALD +YA +LGVD+  +LISQPD
Sbjct: 61  IVEVYGPESSGKTTLALQIIAEAQAMGGIVAFIDAEHALDPVYAARLGVDIDEVLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DMLVRSGA+D +V+DSVAAL PRAEIEG++G++  G+QARLMSQALRKL  
Sbjct: 121 TGEQALEICDMLVRSGAIDAVVVDSVAALVPRAEIEGEIGDTTVGLQARLMSQALRKLAG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           S+S+S    +FINQ+R KIGVMFG+PETTTGG ALKF+SSVR+DIRR+ SIK    I GN
Sbjct: 181 SLSKSNTTCIFINQLREKIGVMFGNPETTTGGRALKFFSSVRIDIRRIDSIKKDGEIVGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + R KVVKNK+A PF+Q EFD+MYGEGIS  G ++D+ V+A +  KSGAW+++  +RLGQ
Sbjct: 241 RVRAKVVKNKVAPPFRQAEFDLMYGEGISREGCIVDMAVEAGVAKKSGAWYTYGEERLGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           GRE +K  L+EN ++ E +E+ +R++  +   +   E A
Sbjct: 301 GREAAKQTLKENPDLREELETKVRESFEIPIITRSTEEA 339


>gi|306834535|ref|ZP_07467648.1| recombination protein A [Streptococcus bovis ATCC 700338]
 gi|304423337|gb|EFM26490.1| recombination protein A [Streptococcus bovis ATCC 700338]
          Length = 384

 Score =  358 bits (918), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 198/356 (55%), Positives = 271/356 (76%), Gaps = 6/356 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERKKALDDALKLIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G++  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDNHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KDS  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGSGDQKDSNI 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK  E +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTGELVKIASDLDIIKKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           GQG EN+K +L E+ E+ + I+  +R + GLV ++  +E A   ++ A  +D  + 
Sbjct: 316 GQGSENAKKYLAEHPEVFDEIDHKVRVHYGLVEETEYEEAADVVEESAATNDNVDE 371


>gi|251773419|gb|EES53968.1| recA protein [Leptospirillum ferrodiazotrophum]
          Length = 357

 Score =  358 bits (918), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 209/328 (63%), Positives = 273/328 (83%), Gaps = 1/328 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K ++L+ ALSQI++ +GKG+IM++G    I E   V+SSGSL LDIALGIGG+PKGRI
Sbjct: 6   SNKQRSLDLALSQIEKQFGKGSIMRMGKDAPIIE-TPVISSGSLALDIALGIGGYPKGRI 64

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALH IA+  K  G  AF+DAEHALD  YARKLGV  ++LLI+QPD+
Sbjct: 65  IEIYGPESSGKTTLALHAIAEVHKKNGMAAFIDAEHALDLGYARKLGVKTEDLLIAQPDS 124

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + LVRSG++D+IV+DSVAAL P+AE+EGDMG+S  G+QARLMSQALRKLTSS
Sbjct: 125 GEQALEIAETLVRSGSLDLIVVDSVAALVPKAELEGDMGDSHMGLQARLMSQALRKLTSS 184

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+S RLDIRR+ SIK+ D + GN+
Sbjct: 185 ISKSSTVVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIESIKEGDHVLGNR 244

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            RVKVVKNKMA PF+Q EFDI + EG+S  GELIDLGV+  +++KSG+W+S+  +++GQG
Sbjct: 245 VRVKVVKNKMAPPFRQAEFDISFNEGVSSVGELIDLGVEHGLLEKSGSWYSYGTEKIGQG 304

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           +E  K +L+ + ++A++++  +R+ AGL
Sbjct: 305 KEAVKGYLKAHPDLAKSLDRAIREKAGL 332


>gi|42782864|ref|NP_980111.1| recombinase A [Bacillus cereus ATCC 10987]
 gi|60392989|sp|P62210|RECA_BACC1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|42738791|gb|AAS42719.1| RecA [Bacillus cereus ATCC 10987]
          Length = 343

 Score =  358 bits (918), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 207/337 (61%), Positives = 269/337 (79%), Gaps = 2/337 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG Q      +  VSSGSL LD+ALG+GG+P+GR
Sbjct: 1   MSDRQAALDMALKQIEKQFGKGSIMKLGEQAE--RKVSTVSSGSLALDVALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPD
Sbjct: 59  IIEIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   +K  + I GN
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T+VKVVKNK+A PF+  E DIMYGEGIS  GE++D+  +  IV KSGAW+S+  +RLGQ
Sbjct: 239 KTKVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           GRENSK FL+EN ++ E I   +R++ G+  DS  ++
Sbjct: 299 GRENSKQFLKENTDLREEIAFFIREHHGISEDSGAED 335


>gi|256847970|ref|ZP_05553414.1| recA protein [Lactobacillus coleohominis 101-4-CHN]
 gi|256715030|gb|EEU30007.1| recA protein [Lactobacillus coleohominis 101-4-CHN]
          Length = 359

 Score =  358 bits (918), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 190/352 (53%), Positives = 260/352 (73%), Gaps = 2/352 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL +I++ +GKG+IM++G        I  VSSGSL +D ALGIGG+P+GRI+E
Sbjct: 5   RKTALDNALKKIEKNFGKGSIMRMGDAADT--KIASVSSGSLAIDDALGIGGYPRGRIIE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  YA  LGVD+ NLL+SQPDTGE
Sbjct: 63  MYGPESSGKTTVALHAVAEVQKQGGTAAYIDAENALDPQYAEALGVDIDNLLLSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q LEI D L+ SGAVDI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I+
Sbjct: 123 QGLEIADALIASGAVDIVVVDSVAALVPRAEIEGEMGDTHVGLQARLMSQALRKLSGEIN 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++R++IRR   +K+   + GN+ +
Sbjct: 183 KTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRIEIRRGEQLKEGKEVIGNRAK 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           +K+VKNK+A PFK+ E DIMYG GIS  GEL+D+ V+ ++V KSGAW+S+   R+GQGRE
Sbjct: 243 IKIVKNKVAPPFKRAEVDIMYGTGISKTGELLDMAVEKNLVKKSGAWYSYGSDRIGQGRE 302

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           N+K +L E+ E  + + + +R+   +      +  A            + +E
Sbjct: 303 NAKKWLSEHPEQMQELMTKVREAYNMPVSDEDKAEAKTAASQEPASTQETIE 354


>gi|331701275|ref|YP_004398234.1| protein recA [Lactobacillus buchneri NRRL B-30929]
 gi|329128618|gb|AEB73171.1| Protein recA [Lactobacillus buchneri NRRL B-30929]
          Length = 379

 Score =  358 bits (918), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 192/339 (56%), Positives = 262/339 (77%), Gaps = 2/339 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL  I++ +GKG+IM++G +      I  + SGSL LD ALG+GG+P+GRIVE
Sbjct: 5   RKVALDKALKNIEKEFGKGSIMRMGDKADT--QISTIPSGSLALDDALGVGGYPRGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGE
Sbjct: 63  IYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q L+ITD LV SGA+DI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +IS
Sbjct: 123 QGLQITDALVTSGAIDIVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTIS 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++K I +FINQ+R K+GVMFG+PETT GG ALKFY+++RL+IRR   IKD  +I GN+ R
Sbjct: 183 KTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATIRLEIRRAEQIKDGTNIIGNRVR 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           +KVVKNK+A PFK+ E DIMYG+GIS  GEL+D+ V+  I++KSG+W+S+  +R+GQGRE
Sbjct: 243 IKVVKNKVAPPFKRAEVDIMYGKGISQSGELVDMAVEKDIINKSGSWYSYGEERIGQGRE 302

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           N+K +L E+ ++ + +   +R    +  ++        T
Sbjct: 303 NAKTYLEEHQDMYDEVMKKVRAAYDIPDETDSDTSDAKT 341


>gi|309803080|ref|ZP_07697179.1| RecA protein [Lactobacillus iners LactinV 11V1-d]
 gi|308164861|gb|EFO67109.1| RecA protein [Lactobacillus iners LactinV 11V1-d]
          Length = 345

 Score =  358 bits (918), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 186/347 (53%), Positives = 263/347 (75%), Gaps = 2/347 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K  ALE AL +I++ +GKGA+M++G +  +   I  +S+GS+ LD ALG+GG+P+
Sbjct: 1   MAKDEKKAALELALKKIEKNFGKGAVMRMGEK--VDTKISTISTGSIALDTALGVGGYPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQ
Sbjct: 59  GRIIEVYGPESSGKTTVALHAVAEVQKNGGTAAYIDAENAMDPAYAEALGVDIDSLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL
Sbjct: 119 PNTGEEGLQIADTLISSGAIDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + +IS++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++R+   IK      
Sbjct: 179 SGNISKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRKSEQIKQGSDPI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G++ ++KVVKNK+A PFK    DIMYG GIS  GEL+D+ V+  IV+KSGAW+S+   R+
Sbjct: 239 GSRVKIKVVKNKVAPPFKVATVDIMYGIGISKSGELLDMAVEKDIVNKSGAWYSYGDDRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           GQGREN+K +L E+ +I   I   +RQ  G+      ++ + +T+ +
Sbjct: 299 GQGRENAKQYLEEHPDIFREINDKVRQAYGIDNKESDEDSSEDTEQE 345


>gi|300812731|ref|ZP_07093138.1| RecA protein [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496271|gb|EFK31386.1| RecA protein [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 369

 Score =  358 bits (918), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 194/347 (55%), Positives = 270/347 (77%), Gaps = 2/347 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K  ALEAAL +I++ +GKGA+M++G +  +   I  V SGSL LD ALG+GG+P+
Sbjct: 1   MAKDEKQAALEAALKKIEKNFGKGAVMRMGEK--VDTQISTVPSGSLALDAALGVGGYPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+  L++SQ
Sbjct: 59  GRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDQLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL
Sbjct: 119 PNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + +I+++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK   ++ 
Sbjct: 179 SGTIAKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSTNVI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+     IVDK+GAW+S+ G+++
Sbjct: 239 GNRVKIKVVKNKVAPPFKVAEVDIMYGQGISQSGELLDMAADQDIVDKAGAWYSYHGEKI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           GQGREN+K +L E+ +++E+I + +R+  G+ A+SL ++       +
Sbjct: 299 GQGRENAKKYLEEHPDVSEDIRTQVRKAYGIDAESLEEKENPEKVKE 345


>gi|302876044|ref|YP_003844677.1| recA protein [Clostridium cellulovorans 743B]
 gi|307686762|ref|ZP_07629208.1| recombinase A [Clostridium cellulovorans 743B]
 gi|302578901|gb|ADL52913.1| recA protein [Clostridium cellulovorans 743B]
          Length = 360

 Score =  358 bits (918), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 220/353 (62%), Positives = 283/353 (80%), Gaps = 3/353 (0%)

Query: 7   MNIV-DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           MNI  DK KA+E  +SQI++ +GKG+IM+L    +    IE +S+GSL LDIALG+GG P
Sbjct: 1   MNINNDKIKAIETVMSQIEKQFGKGSIMKL--DKASVMDIETISTGSLALDIALGVGGVP 58

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+EIYGPESSGKTT+ LH IA++QK GGT AF+DAEHALD  YAR+LGV +  LL+S
Sbjct: 59  RGRIIEIYGPESSGKTTVTLHVIAEAQKMGGTAAFIDAEHALDPSYARRLGVKVNELLVS 118

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI + LVRS +VD+IV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRK
Sbjct: 119 QPDNGEQALEIVEALVRSNSVDVIVVDSVAALVPRAEIEGEMGDSHIGLQARLMSQALRK 178

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LT++I++SKC+++FINQ+R KIG+MFGSPETTTGG ALKFYSS+RLDIR++ ++K  + I
Sbjct: 179 LTAAINKSKCVVIFINQLREKIGIMFGSPETTTGGRALKFYSSIRLDIRKIDTLKSGEEI 238

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+TR+KV+KNK+A PFK++EFDIMY EGIS  G+LID+ V   IV+KSGAWFS+K  R
Sbjct: 239 LGNRTRIKVIKNKVAPPFKKIEFDIMYNEGISREGDLIDIAVNEGIVEKSGAWFSYKATR 298

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           LGQGRENSK+FL+EN+ +A  IE+L+RQ   L     +    I  K+   +++
Sbjct: 299 LGQGRENSKLFLKENLAVASEIENLIRQKYNLPLKKSVINEEIIEKELLGEEE 351


>gi|170664132|gb|ACB28485.1| RecA [Burkholderia cenocepacia]
 gi|170664134|gb|ACB28486.1| RecA [Burkholderia cenocepacia]
 gi|170664136|gb|ACB28487.1| RecA [Burkholderia cenocepacia]
 gi|170664138|gb|ACB28488.1| RecA [Burkholderia cenocepacia]
 gi|170664140|gb|ACB28489.1| RecA [Burkholderia cenocepacia]
 gi|170664142|gb|ACB28490.1| RecA [Burkholderia cenocepacia]
          Length = 310

 Score =  358 bits (918), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 219/311 (70%), Positives = 271/311 (87%), Gaps = 1/311 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGL 337
           IE+ +R++ G+
Sbjct: 300 IENRIRESLGV 310


>gi|308212816|gb|ADO21636.1| RecA [Burkholderia arboris]
          Length = 317

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 219/313 (69%), Positives = 272/313 (86%), Gaps = 1/313 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           + KG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FDKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGLVA 339
           IE+ +R++ G+V+
Sbjct: 300 IENRIRESLGVVS 312


>gi|296802980|gb|ADH51566.1| DNA recombinase [Burkholderia contaminans]
          Length = 309

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 218/310 (70%), Positives = 269/310 (86%), Gaps = 1/310 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L
Sbjct: 1   QFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTL 59

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+
Sbjct: 60  QVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGS 119

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RM
Sbjct: 120 IDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRM 179

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++
Sbjct: 180 KIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRE 239

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
             FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA 
Sbjct: 240 AIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAR 299

Query: 326 NIESLLRQNA 335
            IE+ +R++ 
Sbjct: 300 EIENRIRESL 309


>gi|218245807|ref|YP_002371178.1| recombinase A [Cyanothece sp. PCC 8801]
 gi|257058853|ref|YP_003136741.1| recombinase A [Cyanothece sp. PCC 8802]
 gi|226737754|sp|B7JZS9|RECA_CYAP8 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|218166285|gb|ACK65022.1| recA protein [Cyanothece sp. PCC 8801]
 gi|256589019|gb|ACU99905.1| recA protein [Cyanothece sp. PCC 8802]
          Length = 349

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 198/351 (56%), Positives = 264/351 (75%), Gaps = 8/351 (2%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  DK KAL   L+QI+R +GKG+IM+LG    +   +E +SSGSL LD+ALG GG P+G
Sbjct: 6   NNPDKEKALGLVLNQIERNFGKGSIMRLGDAARMR--VETISSGSLTLDLALG-GGLPQG 62

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EIYGPESSGKTTLALH IA+ QK GG  AFVDAEHALD  Y+  LGVD+ NLL++QP
Sbjct: 63  RIIEIYGPESSGKTTLALHAIAEVQKAGGVAAFVDAEHALDPNYSNALGVDIDNLLVAQP 122

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGE ALEI D LVRS AVDI+VIDSVAAL PRAEIEG+MG++  G+QARLMS+ALRK+ 
Sbjct: 123 DTGESALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEGEMGDTQVGLQARLMSKALRKIA 182

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-IT 246
            +I +S C+++F+NQ+R KIGV +GSPE TTGGNALKFY+SVRLDIRR+ ++K       
Sbjct: 183 GNIGKSGCVVIFLNQLRQKIGVTYGSPEVTTGGNALKFYASVRLDIRRIQTLKKGSEGEY 242

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G + +VKV KNK+A PF+  EFDI++G+GIS  G ++DL  +  +V++ GAW+S+ G+ +
Sbjct: 243 GIRAKVKVAKNKVAPPFRIAEFDIIFGKGISRMGCMLDLAEQTDVVNRKGAWYSYNGENI 302

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
            QGR+N+  +L +N E+A+ IE  +R+   L + +     AI+  DD +++
Sbjct: 303 SQGRDNAVKYLEDNPEVADTIERQVREKLELGSLNF----AISQTDDNEEE 349


>gi|227535607|ref|ZP_03965656.1| recombination protein A [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227186737|gb|EEI66804.1| recombination protein A [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 353

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 193/345 (55%), Positives = 267/345 (77%), Gaps = 2/345 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   ++ KAL+ AL +I++ +GKGAIM++G++      + VVSSGSL +D ALG+G FP+
Sbjct: 1   MAGDERQKALDVALKKIEKNFGKGAIMRMGAKADTR--VSVVSSGSLAVDDALGVGSFPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGV++  LL+SQ
Sbjct: 59  GRIVEIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQ LEI D LV SGA+DI+VIDSVAAL PRAEIEGDMG++  G+QARLMSQALRKL
Sbjct: 119 PDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + SI+++K I +FINQ+R K+G++FGSPETT GG ALKFY++VRL+IRR   IK    + 
Sbjct: 179 SGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVV 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+T++KVVKNK+A PF+    DIMYG+GIS  GEL+D+ V+  IV+K+G+W++++G+R+
Sbjct: 239 GNRTKIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKAGSWYAYQGERI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           GQGREN+K +L  + ++ + I+  +R   G+ A    +  +++  
Sbjct: 299 GQGRENAKTYLDNHADLQQTIKQQVRVAYGMAAAPGRETASVSED 343


>gi|148887229|emb|CAM12781.1| recombinase A [Ochrobactrum anthropi]
          Length = 299

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 239/300 (79%), Positives = 274/300 (91%), Gaps = 1/300 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           +AALSQI+R +GKG+IM+LG      E IE VS+GSL LDIALG+GG PKGRIVEIYGPE
Sbjct: 1   DAALSQIERAFGKGSIMRLGQNDHSIE-IETVSTGSLSLDIALGVGGLPKGRIVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS C+
Sbjct: 120 TDTLVRSGAIDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCM 179

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQTRVKVVK
Sbjct: 180 VIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQTRVKVVK 239

Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316
           NK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QRLGQGREN+K +
Sbjct: 240 NKLAPPFKQVEFDIMYGAGVSKMGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQY 299


>gi|296837411|gb|ADH59564.1| DNA recombinase [Burkholderia lata]
          Length = 309

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 218/310 (70%), Positives = 269/310 (86%), Gaps = 1/310 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L
Sbjct: 1   QFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTL 59

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+
Sbjct: 60  QVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGS 119

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RM
Sbjct: 120 IDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRM 179

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++
Sbjct: 180 KIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRE 239

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
             FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA 
Sbjct: 240 AIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAR 299

Query: 326 NIESLLRQNA 335
            IE+ +R++ 
Sbjct: 300 EIENRIRESL 309


>gi|295105861|emb|CBL03404.1| RecA protein [Gordonibacter pamelaeae 7-10-1-b]
          Length = 352

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 200/339 (58%), Positives = 259/339 (76%), Gaps = 1/339 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +K+K L+    QI+  +G+G+IM+LG  G     I V+ +G+L LD ALGIGG P+GR
Sbjct: 2   NDEKAKMLKLTTDQIESKFGQGSIMKLGEDGKELN-IGVIPTGALPLDAALGIGGVPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTTLAL  +A++Q  GG  AF+DAEHALD +YA +LGVD+  +LISQPD
Sbjct: 61  IIEVYGPESSGKTTLALQILAEAQAMGGIVAFIDAEHALDPVYAARLGVDIDEVLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DMLVRSGA+D +V+DSVAAL PRAEIEG++G++  G+QARLMSQALRKL  
Sbjct: 121 TGEQALEICDMLVRSGAIDAVVVDSVAALVPRAEIEGEIGDTTVGLQARLMSQALRKLAG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           S+S+S    +FINQ+R KIGVMFG+PETTTGG ALKF+SSVR+DIRR+ SIK    ITGN
Sbjct: 181 SLSKSNTTCIFINQLREKIGVMFGNPETTTGGRALKFFSSVRIDIRRIDSIKKDGEITGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + R KVVKNK+A PFKQ EFD+MYGEGIS  G ++D+ V+A +  KSGAW+++  +RLGQ
Sbjct: 241 RVRAKVVKNKVAPPFKQAEFDLMYGEGISREGCIVDMAVEAGVAKKSGAWYTYGEERLGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           GRE +K  L+EN ++ E IE  +R+   +   +   + A
Sbjct: 301 GREAAKQTLKENPDLREEIELKVREAFEIPVITRTADEA 339


>gi|158341040|ref|YP_001522207.1| recombinase A [Acaryochloris marina MBIC11017]
 gi|158311281|gb|ABW32893.1| protein RecA [Acaryochloris marina MBIC11017]
          Length = 357

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 195/360 (54%), Positives = 267/360 (74%), Gaps = 5/360 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M  + EMN  +K KAL+  +  +++ +GKGAIM+LG    +   +E +SSG+L LD+ALG
Sbjct: 1   MSAKNEMN--EKQKALDLVMKNVEKTFGKGAIMRLGDATRM--QVETISSGALTLDLALG 56

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG P+GR++EIYGPESSGKTT+ALH I+Q QKTGG  AFVDAEHALD +YA  LGVD+ 
Sbjct: 57  -GGLPRGRVIEIYGPESSGKTTVALHAISQIQKTGGVAAFVDAEHALDPVYAAALGVDVS 115

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPD+GE ALEI D LVRS AVD++V+DSVAALTPRAEIEGDMG+S  G+QARLMS
Sbjct: 116 ELLVSQPDSGEMALEIVDQLVRSSAVDLVVVDSVAALTPRAEIEGDMGDSHMGLQARLMS 175

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRK+TS+I++S   ++F+NQ+R KIGV +G+PE TTGGNALKFY+SVRLDIRR+ ++K
Sbjct: 176 QALRKITSNIAKSGSTVIFLNQLRQKIGVTYGNPEVTTGGNALKFYASVRLDIRRIQTLK 235

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
               + G + +VKV KNK+A PF+  EFDI++G+GIS  G L+D+  +  I+ + GAW+S
Sbjct: 236 KGTDMYGIRAKVKVAKNKVAPPFRIAEFDILFGQGISTMGCLVDMAEEKDIIVRKGAWYS 295

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           + G  +GQGREN+  +  +N E A+++E  +RQ   L  ++ +        ++   ++ D
Sbjct: 296 YDGSNIGQGRENTIQYFLDNPEFAQDVEQQVRQKLDLGGEADVNANNAIEIEETHLEEAD 355


>gi|206602303|gb|EDZ38784.1| RecA protein [Leptospirillum sp. Group II '5-way CG']
          Length = 360

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 206/323 (63%), Positives = 267/323 (82%), Gaps = 1/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + K+L+ ALSQI++ +GKG+IM+LG +  + + + V+ SGSL LDIALGIGG+P+GR+VE
Sbjct: 9   RQKSLDLALSQIEKQFGKGSIMRLG-KDQVPQIVPVIPSGSLALDIALGIGGYPRGRVVE 67

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTLALH I++  K GG  AF+DAEHALD  YA++LGV  ++LLI+QPDTGE
Sbjct: 68  LYGPESSGKTTLALHAISEVHKAGGVAAFIDAEHALDVTYAKRLGVRTEDLLIAQPDTGE 127

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEIT+ LVRSG++D+IV+DSVAAL PRAE+EG+MG++  G+QARLMSQALRKLTS+IS
Sbjct: 128 QALEITETLVRSGSIDLIVVDSVAALVPRAELEGEMGDAHVGLQARLMSQALRKLTSAIS 187

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S   ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIRR+ SIK+ D + GN+ R
Sbjct: 188 KSNTTVLFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRRIESIKEGDQVLGNRIR 247

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNKMA PF+Q EFDI + EGIS  GELIDLGV   I++KSGAW+S   +RLGQG+E
Sbjct: 248 VKVVKNKMAPPFRQAEFDISFNEGISTVGELIDLGVDNGILEKSGAWYSMGSERLGQGKE 307

Query: 312 NSKIFLRENIEIAENIESLLRQN 334
             K++L+ + +  + IE  +R  
Sbjct: 308 AVKLYLKNHPDAFKKIEQEIRSK 330


>gi|157284491|gb|ABV31093.1| RecA [Vibrio cholerae O1]
          Length = 337

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 201/335 (60%), Positives = 266/335 (79%), Gaps = 2/335 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
            QI++ +GKG+IM LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGK
Sbjct: 1   GQIEKQFGKGSIMPLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGK 58

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L
Sbjct: 59  TTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDAL 118

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FI
Sbjct: 119 ARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLRQSNCMCIFI 178

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR++VVKNK+A
Sbjct: 179 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIRVVKNKIA 238

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
           +PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G+++GQG+ N+  +L+EN
Sbjct: 239 APFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGKKIGQGKANACKYLKEN 298

Query: 321 IEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            EIA+ ++  LR+      +  L     +  DD +
Sbjct: 299 PEIAKTLDKKLREMLLNPENMQLIAETSSAADDVE 333


>gi|254362313|ref|ZP_04978425.1| recombinase RecA [Mannheimia haemolytica PHL213]
 gi|261493255|ref|ZP_05989782.1| recombinase A [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261496502|ref|ZP_05992882.1| recombinase A [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|11387039|sp|Q9RNY0|RECA_PASHA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|5825547|gb|AAD53288.1|AF176376_1 RecA recombinase [Mannheimia haemolytica]
 gi|153093893|gb|EDN74821.1| recombinase RecA [Mannheimia haemolytica PHL213]
 gi|261307705|gb|EEY09028.1| recombinase A [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261311105|gb|EEY12281.1| recombinase A [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 368

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 219/358 (61%), Positives = 282/358 (78%), Gaps = 3/358 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K+++   K KAL AAL+QI++ +GKG+IM+LG   ++   IE VS+GSLGLD ALGIGG 
Sbjct: 13  KQIDPEQKEKALAAALAQIEKQFGKGSIMKLGDTQAL--DIEAVSTGSLGLDSALGIGGL 70

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P GRIVEIYGPESSGKTTL L  +AQ+QK G TCAF+DAEHALD IYARKLGVD   LLI
Sbjct: 71  PMGRIVEIYGPESSGKTTLTLSVVAQAQKNGKTCAFIDAEHALDPIYARKLGVDTDGLLI 130

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALR
Sbjct: 131 SQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALR 190

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT++I  + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G +KD D 
Sbjct: 191 KLTANIKATNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRSGVVKDGDE 250

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + G++T+VK+VKNK+A PF++V+FDIMYGEGI+   EL+ L      ++K+GAWFS++G+
Sbjct: 251 VIGSETKVKIVKNKVAPPFREVQFDIMYGEGIARMNELLILAESHGFINKAGAWFSYEGE 310

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           ++GQG+ N+  +L+E+ E+A  IE  +R N  +   +    P     D+AD + ++  
Sbjct: 311 KIGQGKNNAIKWLKEHPEVASKIEQDIR-NLLISNPTFTATPDSENADNADDEFSEEE 367


>gi|148887237|emb|CAM12785.1| recombinase A [Ochrobactrum sp. TK 14]
          Length = 299

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 238/300 (79%), Positives = 275/300 (91%), Gaps = 1/300 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           +AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG PKGRIV+IYGPE
Sbjct: 1   DAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLPKGRIVKIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS C+
Sbjct: 120 TDTLVRSGAIDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCM 179

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQTRVKVVK
Sbjct: 180 VIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQTRVKVVK 239

Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316
           NK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QRLGQGREN+K +
Sbjct: 240 NKLAPPFKQVEFDIMYGAGVSKMGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQY 299


>gi|291532875|emb|CBL05988.1| RecA protein [Megamonas hypermegale ART12/1]
          Length = 347

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 209/329 (63%), Positives = 269/329 (81%), Gaps = 1/329 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+ +DK +ALE+AL QI+R +GKG+IM+LG   +    IEV+ +G L LD ALG+GG P+
Sbjct: 1   MDKMDKVQALESALKQIERDFGKGSIMKLGDVSANMN-IEVIHTGCLPLDAALGVGGVPR 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEI+GPESSGKTT+ALH +A++QKTGG  AF+DAEHALD +YA+KLGVD+ NLLISQ
Sbjct: 60  GRIVEIFGPESSGKTTVALHIVAEAQKTGGVAAFIDAEHALDPVYAKKLGVDIDNLLISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI D LVRSGA+D++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQA+RKL
Sbjct: 120 PDNGEQALEIADALVRSGAIDVVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQAMRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T  IS+S+   +FINQ+R K+GVMFG+PETTTGG ALKFY+S+RLD+R++ +IK  +   
Sbjct: 180 TGIISKSRTTAIFINQIREKVGVMFGNPETTTGGRALKFYASIRLDVRKIDTIKQGNDPV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G++TR+KVVKNK+A PFKQ EFDIMYGEGIS  G LID+G    I+DKSG W+S++G RL
Sbjct: 240 GSRTRIKVVKNKVAPPFKQAEFDIMYGEGISREGSLIDMGTAFEILDKSGTWYSYQGTRL 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNA 335
           GQG+EN K +L+E+ + A  IE+ +R+  
Sbjct: 300 GQGKENVKAYLKEHADTALEIENKIREKL 328


>gi|323341789|ref|ZP_08082022.1| recombination protein A [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464214|gb|EFY09407.1| recombination protein A [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 345

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 189/330 (57%), Positives = 262/330 (79%), Gaps = 2/330 (0%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
              M+   K K L+ A+ QI++ +GKG+IM+LG + ++   I+ +SSGSL LD ALGIGG
Sbjct: 2   EDRMDNAKKDKVLDDAIKQIEKQFGKGSIMRLGDRAAV--DIDAISSGSLSLDAALGIGG 59

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
           +PKGRI+EIYGPESSGKTTLALH IA+ QK GG  AF+DAE+A+D IYA+ LGV++ +L+
Sbjct: 60  YPKGRIIEIYGPESSGKTTLALHAIAEVQKAGGKAAFIDAENAIDPIYAQNLGVNIDDLI 119

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPD+GEQ LEI D+LVRSGAVD+IV+DSVAAL P+AE++G+MG++  G+QAR+MS+A+
Sbjct: 120 LSQPDSGEQGLEIVDVLVRSGAVDLIVVDSVAALVPQAELDGEMGDAQVGLQARMMSKAM 179

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKL+  ++R +C  +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLDIRR   IK   
Sbjct: 180 RKLSGGMNRGECTAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDIRRSEQIKQGT 239

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            I GN+  +KVVKNK+A PF+  + +I+YG+GIS+ GE+IDLGV+   ++KSG+W+S+K 
Sbjct: 240 DIVGNKANIKVVKNKVAPPFRATQVEIIYGKGISYIGEVIDLGVQYDFINKSGSWYSYKD 299

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           +++GQGRE  + FL +N +I E I + +R+
Sbjct: 300 EKIGQGREAVRSFLEDNPKITEEIAAQIRE 329


>gi|47571262|gb|AAT35788.1| RecA [Mycobacterium sp. ATCC 35788]
          Length = 307

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 197/308 (63%), Positives = 257/308 (83%), Gaps = 2/308 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 2   PDREKALELAMAQIEKSYGKGSVMRLGDE--MRQPISVIPTGSIALDVALGIGGLPRGRV 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 60  VEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T +
Sbjct: 120 GEQALEIADMLIRSGALDILVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGA 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+
Sbjct: 180 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNR 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG GIS  G LID+GV+   + KSG+WF+++G++LGQG
Sbjct: 240 TRVKVVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVEQGFIRKSGSWFTYEGEQLGQG 299

Query: 310 RENSKIFL 317
           +EN++ FL
Sbjct: 300 KENARTFL 307


>gi|47571264|gb|AAT35789.1| RecA [Mycobacterium asiaticum]
          Length = 307

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 195/308 (63%), Positives = 256/308 (83%), Gaps = 2/308 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 2   PDREKALELAMAQIEKSYGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRV 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 60  IEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T +
Sbjct: 120 GEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGA 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R  IGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+
Sbjct: 180 LNNSGTTAIFINQLRGTIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNR 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV    + KSG+WF+++G++LGQG
Sbjct: 240 TRVKVVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVDQGFIRKSGSWFTYEGEQLGQG 299

Query: 310 RENSKIFL 317
           +EN++ FL
Sbjct: 300 KENARNFL 307


>gi|332039278|gb|EGI75691.1| reca protein [Hylemonella gracilis ATCC 19624]
          Length = 356

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 218/334 (65%), Positives = 277/334 (82%), Gaps = 1/334 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR++EIYGPESSGKTT
Sbjct: 23  IEKQFGKGTIMRLGE-GEKIEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTT 81

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK  GTCAFVDAEHALD+ YA+KLGV+L++LLISQPDTGEQALEI D LVR
Sbjct: 82  LTLQVIAEMQKMDGTCAFVDAEHALDTQYAQKLGVNLQDLLISQPDTGEQALEIVDSLVR 141

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AEIEG+MG+SLPG+QARLMSQALRKLT++I ++   ++FINQ
Sbjct: 142 SGAVDLIVVDSVAALTPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNTTVIFINQ 201

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK  +   GN+T+VKVVKNK++ P
Sbjct: 202 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGEEAIGNETKVKVVKNKVSPP 261

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FK  EFDI++GEG+S  GE+ID+GV A I+DKSGAW+++ G+++GQGR+N++ FLREN E
Sbjct: 262 FKSAEFDILFGEGVSREGEVIDMGVTAHIIDKSGAWYAYNGEKIGQGRDNAREFLRENPE 321

Query: 323 IAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           +A  IE+ +R++ G+        P  +   D  +
Sbjct: 322 LALEIENKVRESLGIPLRGEGGAPLASAGGDNAE 355


>gi|269959163|ref|YP_003328952.1| recombinase A [Anaplasma centrale str. Israel]
 gi|269848994|gb|ACZ49638.1| recombinase A [Anaplasma centrale str. Israel]
          Length = 358

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 216/348 (62%), Positives = 279/348 (80%), Gaps = 2/348 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            DK KAL+AA+SQI+R +G+GAIM+L  +    E ++ VS+GS+ LD ALGIGG PKGRI
Sbjct: 11  SDKQKALDAAISQIERAFGRGAIMKL--KQHPAEKMDSVSTGSIALDAALGIGGLPKGRI 68

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEI+GPESSGKTTLALH IA++QK GG CAF+DAEHALD++YARKLGV + +L++SQPDT
Sbjct: 69  VEIFGPESSGKTTLALHVIAEAQKQGGNCAFIDAEHALDTVYARKLGVSVGDLIVSQPDT 128

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQAL I + LV SGA+D+IV+DSVAALTPRAEIEGDMG+   G+QARL+S ALRKLTS 
Sbjct: 129 GEQALHIVEYLVCSGAIDVIVVDSVAALTPRAEIEGDMGDQHMGLQARLLSHALRKLTSV 188

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +S++ CILVFINQ+R+KIGVM+G+PE TTGG+ALKFY+S+RLDIR+V +IKDKDS+ GNQ
Sbjct: 189 VSKANCILVFINQIRIKIGVMYGNPEVTTGGSALKFYTSIRLDIRKVSAIKDKDSVIGNQ 248

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQ EFDI+Y EGIS  GE++D+GVK   V+KSGA++S+   +LGQG
Sbjct: 249 TRVKVVKNKVAPPFKQAEFDIVYNEGISKLGEIVDMGVKFGFVEKSGAYYSYGAVKLGQG 308

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           REN+K +L+ + ++A  +E  +R        +     A    D  +++
Sbjct: 309 RENAKAYLKSSPDVANELEQKIRAYLAESMHNNDLFAADGRTDVLEEE 356


>gi|270264043|ref|ZP_06192311.1| DNA integration/recombination/invertion protein [Serratia odorifera
           4Rx13]
 gi|270042236|gb|EFA15332.1| DNA integration/recombination/invertion protein [Serratia odorifera
           4Rx13]
          Length = 354

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 209/351 (59%), Positives = 275/351 (78%), Gaps = 3/351 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINSRGELVDLGVKHKMIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
            N+  FL+EN  +A        ++  L ++  L      + DD + + ++ 
Sbjct: 304 ANACNFLKENPAVAAE-LDKKLRDLLLHSNGELVTATNESFDDGEAETSEE 353


>gi|47568284|ref|ZP_00238987.1| RecA protein [Bacillus cereus G9241]
 gi|47555112|gb|EAL13460.1| RecA protein [Bacillus cereus G9241]
          Length = 343

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 207/333 (62%), Positives = 267/333 (80%), Gaps = 2/333 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG Q      +  VSSGSL LD+ALG+GG+P+GR
Sbjct: 1   MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERR--VSTVSSGSLALDVALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPD
Sbjct: 59  IIEIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   +K  + I GN
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T+VKVVKNK+A PF+  E DIMYGEGIS  GE++D+  +  IV KSGAW+S+  +RLGQ
Sbjct: 239 KTKVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           GRENSK FL+EN ++ E I   +R++ G+  DS
Sbjct: 299 GRENSKQFLKENTDLREEIAFFIREHHGISEDS 331


>gi|290968717|ref|ZP_06560255.1| RecA protein [Megasphaera genomosp. type_1 str. 28L]
 gi|290781370|gb|EFD93960.1| RecA protein [Megasphaera genomosp. type_1 str. 28L]
          Length = 348

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 207/324 (63%), Positives = 263/324 (81%), Gaps = 1/324 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K  ALE A+ +I++ +GKGAIM+LG        +EV+SSGSL +D+A+G+GG+P+GR++E
Sbjct: 4   KQTALENAMKKIEKDFGKGAIMRLGDLAGKMN-LEVISSGSLAVDLAVGVGGYPRGRVIE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH IA +QK+GG  AF+DAEHALD +YAR LGVD   LLISQPD GE
Sbjct: 63  IYGPESSGKTTLALHAIASAQKSGGIAAFIDAEHALDPVYARHLGVDTGELLISQPDNGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEIT+ LVRSGAVDIIV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  I+
Sbjct: 123 QALEITEELVRSGAVDIIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGIIA 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +SK I++FINQ+R K+GVMFG+PETTTGG ALKFY+S+R++IR+   IK    +TGN+ R
Sbjct: 183 KSKAIVIFINQLREKVGVMFGNPETTTGGRALKFYASIRMEIRKGEVIKSAGDVTGNRAR 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF+  EFDIMYG GIS  G ++DLG    I++KSG W+S+KG+RLGQG+E
Sbjct: 243 VKVVKNKVAPPFRNCEFDIMYGTGISREGTILDLGASMDIIEKSGTWYSYKGERLGQGKE 302

Query: 312 NSKIFLRENIEIAENIESLLRQNA 335
           N K+FL+E+ E A+ +E ++R   
Sbjct: 303 NVKLFLKEHPETADEVERIIRDTL 326


>gi|229157358|ref|ZP_04285436.1| hypothetical protein bcere0010_35410 [Bacillus cereus ATCC 4342]
 gi|228626085|gb|EEK82834.1| hypothetical protein bcere0010_35410 [Bacillus cereus ATCC 4342]
          Length = 343

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 207/333 (62%), Positives = 267/333 (80%), Gaps = 2/333 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG Q      +  VSSGSL LD+ALG+GG+P+GR
Sbjct: 1   MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERR--VSTVSSGSLALDVALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPD
Sbjct: 59  IIEIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   +K  + I GN
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T+VKVVKNK+A PF+  E DIMYGEGIS  GE++D+  +  IV KSGAW+S+  +RLGQ
Sbjct: 239 KTKVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           GRENSK FL+EN ++ E I   +R++ G+  DS
Sbjct: 299 GRENSKQFLKENTDLREEIAFFIREHHGISEDS 331


>gi|215254333|gb|ACJ64159.1| recombinase A [Vibrio cholerae]
          Length = 331

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 200/333 (60%), Positives = 265/333 (79%), Gaps = 2/333 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTT
Sbjct: 1   IEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L R
Sbjct: 59  LTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALAR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DS+AALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 119 SGAVDVIVVDSIAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 178

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+P
Sbjct: 179 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAP 238

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+ N+  +L+EN E
Sbjct: 239 FKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGHKIGQGKANACKYLKENPE 298

Query: 323 IAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           IA+ ++  LR+      +  L     +  DD +
Sbjct: 299 IAKTLDKKLREMLLNPENMQLIAETSSAADDVE 331


>gi|317504792|ref|ZP_07962750.1| recombination protein A [Prevotella salivae DSM 15606]
 gi|315664067|gb|EFV03776.1| recombination protein A [Prevotella salivae DSM 15606]
          Length = 339

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 212/335 (63%), Positives = 274/335 (81%), Gaps = 3/335 (0%)

Query: 1   MDYRKEMNI-VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIAL 59
           M    E N   +K KAL+AA+S+I++ +GKG+IM++G +    E ++V+ SGS+GL++AL
Sbjct: 1   MAKETEANQQSEKLKALQAAMSKIEKDFGKGSIMRMGDEQ--IENVDVIPSGSIGLNVAL 58

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           G+GG+P+GRI+EIYGPESSGKTTLALH IA++QK GG  AF+DAEHA D  YA KLGVD+
Sbjct: 59  GVGGYPRGRIIEIYGPESSGKTTLALHAIAEAQKMGGIAAFIDAEHAFDRFYAEKLGVDV 118

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
            NL ISQPD GEQAL+I D L+RS A+DI+V+DSVAALTP+ EIEGDMG+++ G+QARLM
Sbjct: 119 DNLWISQPDNGEQALQIADELIRSSAIDILVVDSVAALTPKKEIEGDMGDNVVGLQARLM 178

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           SQALRKLTS+IS++    +FINQ+R KIGVMFGSPETTTGGNALKFYSSVRLDIRRV S+
Sbjct: 179 SQALRKLTSTISKTNTCCIFINQLREKIGVMFGSPETTTGGNALKFYSSVRLDIRRVTSL 238

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           KD D+I GNQ RVKVVKNK+A PF++VEF+I++GEGIS  GE++DLGV+  I+ KSG+WF
Sbjct: 239 KDGDNIIGNQVRVKVVKNKVAPPFRKVEFEILFGEGISKVGEILDLGVEYGIIQKSGSWF 298

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
           S+   +L QGR+ +K  LR+N E+ + +E  +RQ 
Sbjct: 299 SYNSSKLAQGRDATKNLLRDNPELCDELEGQIRQA 333


>gi|157284497|gb|ABV31096.1| RecA [Vibrio cholerae O1]
          Length = 337

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 199/335 (59%), Positives = 263/335 (78%), Gaps = 2/335 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
             I++ +GKG+IM+LG   ++   +E +S+GSL LD A G GG P GRIVEI+GPESSGK
Sbjct: 1   GSIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDSAWGAGGLPMGRIVEIFGPESSGK 58

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L
Sbjct: 59  TTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDAL 118

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FI
Sbjct: 119 ARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFI 178

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A
Sbjct: 179 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIA 238

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
           +PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+ N+  +L+EN
Sbjct: 239 APFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKEN 298

Query: 321 IEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            EIA+ ++  LR+      +  L     +  DD +
Sbjct: 299 PEIAKTLDKKLREMLLNPENMQLIAETSSAADDVE 333


>gi|157326919|gb|ABV44572.1| RecA [Burkholderia cenocepacia]
          Length = 319

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 221/314 (70%), Positives = 273/314 (86%), Gaps = 1/314 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L
Sbjct: 1   QFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTL 59

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+
Sbjct: 60  QVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGS 119

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RM
Sbjct: 120 IDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRM 179

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++
Sbjct: 180 KIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRE 239

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
             FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ GQ++GQG++N++ FLREN EIA 
Sbjct: 240 AIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGQKIGQGKDNAREFLRENSEIAR 299

Query: 326 NIESLLRQNAGLVA 339
            IE+ +R++ G+V+
Sbjct: 300 EIENRIRESLGVVS 313


>gi|47571266|gb|AAT35790.1| RecA [Mycobacterium asiaticum]
          Length = 307

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 194/308 (62%), Positives = 256/308 (83%), Gaps = 2/308 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 2   PDREKALELAMAQIEKSYGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRV 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 60  IEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T +
Sbjct: 120 GEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGA 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R  IGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+
Sbjct: 180 LNNSGTTAIFINQLRGTIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNR 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV    + KSG+WF+++G+++GQG
Sbjct: 240 TRVKVVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVDQGFIRKSGSWFTYEGEQIGQG 299

Query: 310 RENSKIFL 317
           +EN++ FL
Sbjct: 300 KENARNFL 307


>gi|146424879|emb|CAM12548.1| recombinase A [Ochrobactrum anthropi]
          Length = 298

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 237/299 (79%), Positives = 273/299 (91%), Gaps = 1/299 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           +AALSQI+R +GKG+IM+LG    + E IE V +GSL LDIALG+GG PKGRIVEIYGPE
Sbjct: 1   DAALSQIERAFGKGSIMRLGKNAPVIE-IETVPTGSLSLDIALGVGGLPKGRIVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS C+
Sbjct: 120 TDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCM 179

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQTRVKVVK
Sbjct: 180 VIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQTRVKVVK 239

Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           NK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QRLGQGREN+K 
Sbjct: 240 NKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQ 298


>gi|116513706|ref|YP_812612.1| recombinase A [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|122275524|sp|Q04BJ8|RECA_LACDB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|116093021|gb|ABJ58174.1| RecA protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|325125358|gb|ADY84688.1| Protein recA [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 369

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 194/347 (55%), Positives = 271/347 (78%), Gaps = 2/347 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K  ALEAAL +I++ +GKGA+M++G +  +   I  V SGSL LD ALG+GG+P+
Sbjct: 1   MAKDEKKAALEAALKKIEKNFGKGAVMRMGEK--VDTQISTVPSGSLALDAALGVGGYPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+  L++SQ
Sbjct: 59  GRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDQLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL
Sbjct: 119 PNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + +I+++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK   ++ 
Sbjct: 179 SGTIAKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSTNVI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+     IVDK+GAW+S+ G+++
Sbjct: 239 GNRVKIKVVKNKVAPPFKVAEVDIMYGQGISQSGELLDMAADQDIVDKAGAWYSYHGEKI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           GQGREN+K +L E+ +++E+I++ +R+  G+ A+SL ++       +
Sbjct: 299 GQGRENAKKYLEEHPDVSEDIQTQVRKAYGIDAESLEEKEDPEKVKE 345


>gi|30263785|ref|NP_846162.1| recombinase A [Bacillus anthracis str. Ames]
 gi|49186629|ref|YP_029881.1| recombinase A [Bacillus anthracis str. Sterne]
 gi|118479000|ref|YP_896151.1| recombinase A [Bacillus thuringiensis str. Al Hakam]
 gi|225865760|ref|YP_002751138.1| protein RecA [Bacillus cereus 03BB102]
 gi|229186018|ref|ZP_04313188.1| hypothetical protein bcere0004_35650 [Bacillus cereus BGSC 6E1]
 gi|17368674|sp|Q9APZ2|RECA_BACAN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166199599|sp|A0RHF1|RECA_BACAH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|254790421|sp|C1EP03|RECA_BACC3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|12656081|gb|AAK00736.1| RecA-like [Bacillus anthracis]
 gi|30258429|gb|AAP27648.1| recA protein, group I intron-containing [Bacillus anthracis str.
           Ames]
 gi|49180556|gb|AAT55932.1| recA protein, group I intron-containing [Bacillus anthracis str.
           Sterne]
 gi|118418225|gb|ABK86644.1| RecA protein [Bacillus thuringiensis str. Al Hakam]
 gi|225787667|gb|ACO27884.1| RecA protein [Bacillus cereus 03BB102]
 gi|228597437|gb|EEK55087.1| hypothetical protein bcere0004_35650 [Bacillus cereus BGSC 6E1]
          Length = 343

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 207/333 (62%), Positives = 267/333 (80%), Gaps = 2/333 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG Q      +  VSSGSL LD+ALG+GG+P+GR
Sbjct: 1   MSDRQAALDMALKQIEKQFGKGSIMKLGEQAE--RKVSTVSSGSLALDVALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPD
Sbjct: 59  IIEIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   +K  + I GN
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T+VKVVKNK+A PF+  E DIMYGEGIS  GE++D+  +  IV KSGAW+S+  +RLGQ
Sbjct: 239 KTKVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           GRENSK FL+EN ++ E I   +R++ G+  DS
Sbjct: 299 GRENSKQFLKENTDLREEIAFFIREHHGISEDS 331


>gi|308212732|gb|ADO21594.1| RecA [Burkholderia arboris]
 gi|308212734|gb|ADO21595.1| RecA [Burkholderia arboris]
 gi|308212736|gb|ADO21596.1| RecA [Burkholderia arboris]
 gi|308212738|gb|ADO21597.1| RecA [Burkholderia arboris]
 gi|308212740|gb|ADO21598.1| RecA [Burkholderia arboris]
 gi|308212742|gb|ADO21599.1| RecA [Burkholderia arboris]
 gi|308212744|gb|ADO21600.1| RecA [Burkholderia arboris]
 gi|308212746|gb|ADO21601.1| RecA [Burkholderia arboris]
 gi|308212748|gb|ADO21602.1| RecA [Burkholderia arboris]
 gi|308212750|gb|ADO21603.1| RecA [Burkholderia arboris]
 gi|308212752|gb|ADO21604.1| RecA [Burkholderia arboris]
 gi|308212754|gb|ADO21605.1| RecA [Burkholderia arboris]
 gi|308212756|gb|ADO21606.1| RecA [Burkholderia arboris]
 gi|308212758|gb|ADO21607.1| RecA [Burkholderia arboris]
 gi|308212760|gb|ADO21608.1| RecA [Burkholderia arboris]
 gi|308212762|gb|ADO21609.1| RecA [Burkholderia arboris]
 gi|308212764|gb|ADO21610.1| RecA [Burkholderia arboris]
 gi|308212766|gb|ADO21611.1| RecA [Burkholderia arboris]
 gi|308212768|gb|ADO21612.1| RecA [Burkholderia arboris]
 gi|308212770|gb|ADO21613.1| RecA [Burkholderia arboris]
 gi|308212772|gb|ADO21614.1| RecA [Burkholderia arboris]
 gi|308212774|gb|ADO21615.1| RecA [Burkholderia arboris]
 gi|308212776|gb|ADO21616.1| RecA [Burkholderia arboris]
 gi|308212778|gb|ADO21617.1| RecA [Burkholderia arboris]
 gi|308212780|gb|ADO21618.1| RecA [Burkholderia arboris]
 gi|308212782|gb|ADO21619.1| RecA [Burkholderia arboris]
          Length = 313

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 220/312 (70%), Positives = 272/312 (87%), Gaps = 1/312 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI
Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  
Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  I
Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299

Query: 328 ESLLRQNAGLVA 339
           E+ +R++ G+V+
Sbjct: 300 ENRIRESLGVVS 311


>gi|296803054|gb|ADH51603.1| DNA recombinase [Burkholderia contaminans]
          Length = 311

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 220/312 (70%), Positives = 271/312 (86%), Gaps = 1/312 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI
Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  
Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  I
Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299

Query: 328 ESLLRQNAGLVA 339
           E+ +R++ G+V 
Sbjct: 300 ENRIRESLGVVT 311


>gi|184154987|ref|YP_001843327.1| recombinase A [Lactobacillus fermentum IFO 3956]
 gi|260663382|ref|ZP_05864273.1| RecA protein [Lactobacillus fermentum 28-3-CHN]
 gi|238692954|sp|B2GB15|RECA_LACF3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|183226331|dbj|BAG26847.1| recombinase A [Lactobacillus fermentum IFO 3956]
 gi|260552234|gb|EEX25286.1| RecA protein [Lactobacillus fermentum 28-3-CHN]
          Length = 353

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 188/350 (53%), Positives = 262/350 (74%), Gaps = 6/350 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL +I++ +GKG+IM++G        I  +SSGSL +D ALG+GG+P+GRI+E
Sbjct: 5   RKAALDNALRKIEKNFGKGSIMRMGDAADT--KIATISSGSLAIDEALGVGGYPRGRIIE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTT+ALH +A+ Q+ GGT A++DAE+ALD  YA  LGV + +LL+SQPDTGE
Sbjct: 63  MYGPESSGKTTVALHAVAEVQRRGGTAAYIDAENALDPQYATALGVQINDLLLSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q LEI D L+ SGAVDI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I+
Sbjct: 123 QGLEIADALIASGAVDIVVVDSVAALVPRAEIEGEMGDTHVGLQARLMSQALRKLSGEIN 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++R++IRR   +K+   + GN+ +
Sbjct: 183 KTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRMEIRRGEQLKNGTDVIGNRAK 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           +KVVKNK+A PF++ E DIMYGEGIS  GEL+D+ V+  +V+KSGAW+S+  +R+GQGRE
Sbjct: 243 IKVVKNKVAPPFRKAEVDIMYGEGISKTGELLDMAVEKDLVNKSGAWYSYGNERIGQGRE 302

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQ----EPAINTKDDADKD 357
           N+K +  ++ +    + + +R   G+  D        EP   T ++A  D
Sbjct: 303 NAKQWFADHEDAMNELMNKVRVAYGMEPDEAPATKEGEPQQETIEEASSD 352


>gi|296837431|gb|ADH59574.1| DNA recombinase [Burkholderia contaminans]
          Length = 311

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 220/312 (70%), Positives = 271/312 (86%), Gaps = 1/312 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI
Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  
Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  I
Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299

Query: 328 ESLLRQNAGLVA 339
           E+ +R++ G+V 
Sbjct: 300 ENRIRESLGVVT 311


>gi|327313993|ref|YP_004329430.1| RecA protein [Prevotella denticola F0289]
 gi|326944063|gb|AEA19948.1| RecA protein [Prevotella denticola F0289]
          Length = 341

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 210/323 (65%), Positives = 267/323 (82%), Gaps = 2/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+AA+S+I++ +GKG+IM++G +    E +EV+ +GS+ LD ALG+GG+P+GRI+E
Sbjct: 15  KLKALQAAMSKIEKDFGKGSIMRMGDEQ--IENVEVIPTGSVALDTALGVGGYPRGRIIE 72

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD GE
Sbjct: 73  IYGPESSGKTTLAIHAIAEAQKQGGIAAFIDAEHAFDRFYAEKLGVDVDNLWISQPDNGE 132

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RS A+DI+V+DSVAALTP+ EIEGDMG+S  G+QARLMSQALRKLTS+IS
Sbjct: 133 QALEIADQLIRSSAIDILVVDSVAALTPKKEIEGDMGDSAVGLQARLMSQALRKLTSTIS 192

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGVMFG+PETTTGGNALKFYSSVRLDIRRV SIKD D + GNQ R
Sbjct: 193 KTNTCCIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRVTSIKDGDQVIGNQVR 252

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF++ EF+I +GEGIS  GE++DLGV+  I+ KSG+WFS+ G RL QGR+
Sbjct: 253 VKVVKNKVAPPFRKAEFEITFGEGISKIGEIVDLGVQYGIIQKSGSWFSYNGTRLAQGRD 312

Query: 312 NSKIFLRENIEIAENIESLLRQN 334
            +K  +++N E+AE +E L++Q 
Sbjct: 313 ATKTMIKDNPELAEELEGLIKQA 335


>gi|312898444|ref|ZP_07757834.1| protein RecA [Megasphaera micronuciformis F0359]
 gi|310620363|gb|EFQ03933.1| protein RecA [Megasphaera micronuciformis F0359]
          Length = 347

 Score =  357 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 208/347 (59%), Positives = 270/347 (77%), Gaps = 3/347 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K  ALE A+ +I++ +GKGAIM+LG        +EV+SSGSL +D+A+G+GG+P+GR++E
Sbjct: 4   KQAALENAMKKIEKDFGKGAIMRLGDLAEKMN-LEVISSGSLAVDLAVGVGGYPRGRVIE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH IA +QK GG  AF+DAEHALD +YAR LGVD  +LLISQPD GE
Sbjct: 63  IYGPESSGKTTLALHAIASAQKAGGIAAFIDAEHALDPVYARHLGVDTADLLISQPDNGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEIT+ LVRSGA+DIIV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  IS
Sbjct: 123 QALEITEELVRSGAIDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGIIS 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +SK I++FINQ+R K+G+MFG+PETTTGG ALKFY+SVR++IR+  +IK    + GN+ R
Sbjct: 183 KSKAIVIFINQLREKVGIMFGNPETTTGGRALKFYASVRMEIRKGEAIKSGTDVIGNRAR 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           +KVVKNK+A PF+  E DIMYG GIS  G L+DLG    I++KSG W+S+KG+RLGQG+E
Sbjct: 243 IKVVKNKVAPPFRNCEVDIMYGTGISKEGTLLDLGSSMEILEKSGTWYSYKGERLGQGKE 302

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           N K +L+E+ ++A  IE ++R    LVA+    +  +     A  D+
Sbjct: 303 NVKNYLKEHADVAAEIEQIIRDT--LVAEPEKFDEVLTDVPHASDDE 347


>gi|258645321|ref|ZP_05732790.1| protein RecA [Dialister invisus DSM 15470]
 gi|260402670|gb|EEW96217.1| protein RecA [Dialister invisus DSM 15470]
          Length = 356

 Score =  357 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 207/352 (58%), Positives = 264/352 (75%), Gaps = 2/352 (0%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
             +MN  ++ KALE A+ QI R +G GAIM+LG         EV+ +GSL LDIA+G+GG
Sbjct: 7   NTDMN-SERQKALENAMHQITREFGAGAIMRLGDMKGKL-DTEVIPTGSLALDIAVGVGG 64

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
           +P+GR++EIYGPESSGKTTLALH IA++QK  G  AF+DAEHALD +YA  LGVD + LL
Sbjct: 65  YPRGRVIEIYGPESSGKTTLALHAIAEAQKNNGVAAFIDAEHALDPVYAHHLGVDTERLL 124

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           ISQPD+GEQAL I + LVRSGAVD+IVIDSVAAL P+ EIEGD+G+   G+QARLMS+AL
Sbjct: 125 ISQPDSGEQALSICEQLVRSGAVDMIVIDSVAALVPKQEIEGDIGDQSVGLQARLMSKAL 184

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT  IS+S+ I++FINQ+R K+G+MFG+PETTTGG ALKFYSS+R++IRR  +IK+  
Sbjct: 185 RKLTGIISKSRTIVIFINQIREKVGIMFGNPETTTGGRALKFYSSIRVEIRRGEAIKNGT 244

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+TR KVVKNK+A PFK  EFD+MYGEGIS  G L+DL     I+ KSGAW+S+KG
Sbjct: 245 DVVGNRTRAKVVKNKVAPPFKTAEFDVMYGEGISKEGTLLDLATNMDIIQKSGAWYSYKG 304

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            R+ QGRE +K FLREN EIA  I+ ++R    +  +    +     KD  +
Sbjct: 305 NRISQGREAAKAFLRENQEIAAEIDKIIRDTLVVEPEKFNVDVIAKNKDAKE 356


>gi|299530904|ref|ZP_07044318.1| recA protein [Comamonas testosteroni S44]
 gi|298721125|gb|EFI62068.1| recA protein [Comamonas testosteroni S44]
          Length = 369

 Score =  357 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 224/342 (65%), Positives = 284/342 (83%), Gaps = 7/342 (2%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR++EIYGPESSGKT
Sbjct: 24  QIEKQFGKGTIMKLGE-GEAIEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKT 82

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGTCAF+DAEHALD+ YA+KLGV+L ++LISQPDTGEQALEI D LV
Sbjct: 83  TLTLQVIAEMQKQGGTCAFIDAEHALDTSYAQKLGVNLSDVLISQPDTGEQALEICDSLV 142

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD+IVIDSVAALTP+AEIEG+MG++LPG+QARLMSQALRKLT++I ++ C+++FIN
Sbjct: 143 RSGAVDLIVIDSVAALTPKAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFIN 202

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK  D   GN+T+VKVVKNK++ 
Sbjct: 203 QIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSP 262

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PFK  EFDI++GEGIS  GE++D+GV A I++KSGAW+++ G+++GQGR+NS+ FLREN 
Sbjct: 263 PFKTAEFDILFGEGISREGEILDMGVNAKILEKSGAWYAYNGEKIGQGRDNSREFLRENP 322

Query: 322 EIAENIESLLRQNAGL------VADSLLQEPAINTKDDADKD 357
            +A  IE+ +R++ G+       A +   +PA   K   DKD
Sbjct: 323 ALAIEIENKVRESLGIKLLPVDGAATAEAKPAKGGKGKVDKD 364


>gi|296803094|gb|ADH51623.1| DNA recombinase [Burkholderia seminalis]
          Length = 312

 Score =  357 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 216/313 (69%), Positives = 271/313 (86%), Gaps = 1/313 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN +I   
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPQIVRE 299

Query: 327 IESLLRQNAGLVA 339
           IE+ +R++ G+ +
Sbjct: 300 IENRIRESLGVAS 312


>gi|296803036|gb|ADH51594.1| DNA recombinase [Burkholderia contaminans]
          Length = 307

 Score =  357 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 218/308 (70%), Positives = 268/308 (87%), Gaps = 1/308 (0%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           + +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL 
Sbjct: 1   KQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLT 59

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG
Sbjct: 60  LQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSG 119

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           ++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+R
Sbjct: 120 SIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIR 179

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF+
Sbjct: 180 MKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFR 239

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           +  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA
Sbjct: 240 EAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIA 299

Query: 325 ENIESLLR 332
             IE+ +R
Sbjct: 300 REIENRIR 307


>gi|296803124|gb|ADH51638.1| DNA recombinase [Burkholderia cepacia]
          Length = 310

 Score =  357 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 218/311 (70%), Positives = 270/311 (86%), Gaps = 1/311 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G     I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEATXNIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGL 337
           IE+ +R++ G+
Sbjct: 300 IENRIRESLGV 310


>gi|78047329|ref|YP_363504.1| recombinase A [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325927201|ref|ZP_08188462.1| RecA protein [Xanthomonas perforans 91-118]
 gi|123771392|sp|Q3BUQ9|RECA_XANC5 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|78035759|emb|CAJ23450.1| RecA protein [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325542429|gb|EGD13910.1| RecA protein [Xanthomonas perforans 91-118]
          Length = 344

 Score =  357 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 224/349 (64%), Positives = 282/349 (80%), Gaps = 10/349 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AALSQI++ +GKG++M++G    + E +EV+ +GSL LDIALGIGG PKGR+V
Sbjct: 4   NKKRALSAALSQIEKQFGKGSVMRMGD--RVIEAVEVIPTGSLMLDIALGIGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAQCQKNGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VDI+V+DSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSGSVDIVVVDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  ++VFINQ+RMKIGVM    SPE TTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 182 KRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELID+GV+A +VDK+GAW+S+  +R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVDKAGAWYSYGDERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           G++N++ +LR+N ++A  +E+ LR+           E      DD DK+
Sbjct: 302 GKDNARTYLRDNPQVATRLEAELREKF------QPAEAPREAGDDEDKE 344


>gi|228474992|ref|ZP_04059720.1| protein RecA [Staphylococcus hominis SK119]
 gi|314936554|ref|ZP_07843901.1| protein RecA [Staphylococcus hominis subsp. hominis C80]
 gi|228270977|gb|EEK12365.1| protein RecA [Staphylococcus hominis SK119]
 gi|313655173|gb|EFS18918.1| protein RecA [Staphylococcus hominis subsp. hominis C80]
          Length = 348

 Score =  357 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 198/347 (57%), Positives = 261/347 (75%), Gaps = 2/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+  +  +++ +GKGA+M+LG               S+ LD ALG+GG+PKGRI+
Sbjct: 4   DRQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSVSSG--SVTLDNALGVGGYPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD +YA  LGVD+ NL +SQPD G
Sbjct: 62  EIYGPESSGKTTVALHAIAEVQKNGGVAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI +  VRSGAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 122 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S    +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T
Sbjct: 182 SKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G+R+GQG+
Sbjct: 242 KIKVVKNKVAPPFRIAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           EN K +L+EN +I + I+  LR+  G+    + +    +++   D++
Sbjct: 302 ENVKTYLKENPQIKDEIDRKLREKLGIFDGDVEENEDKSSQTLFDEE 348


>gi|134299770|ref|YP_001113266.1| recA protein [Desulfotomaculum reducens MI-1]
 gi|134052470|gb|ABO50441.1| RecA protein [Desulfotomaculum reducens MI-1]
          Length = 347

 Score =  357 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 208/347 (59%), Positives = 271/347 (78%), Gaps = 4/347 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + DK KALE AL+ I++ +GKG+IM+LG    +   IE +SSG+L LDIALG+GG P+GR
Sbjct: 1   MSDKIKALEIALANIEKQFGKGSIMKLGDSTKL--NIEAISSGALSLDIALGVGGLPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTT+ALH IA++QK  G  AF+DAEHALD +YAR LGVD +NLL+SQPD
Sbjct: 59  VVEIYGPESSGKTTVALHVIAEAQKQNGMAAFIDAEHALDPVYARNLGVDTENLLVSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVD++V+DSVAAL PRAEIEGDMG++  G+QARLMSQALRKLT 
Sbjct: 119 TGEQALEICEALVRSGAVDVVVVDSVAALVPRAEIEGDMGDTHVGLQARLMSQALRKLTG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            +S+SK I+VFINQ+R K+GV++GSPE TTGG ALKFY+SVR+++R+  +IK    I G+
Sbjct: 179 IVSKSKTIVVFINQIREKVGVIYGSPEVTTGGRALKFYASVRMEVRKQENIKQGTDIVGS 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVK+VKNK+A PFKQ EFDIMYG GIS  G ++D+  +  IV+KSGAW+S+  +RLGQ
Sbjct: 239 RTRVKIVKNKVAPPFKQAEFDIMYGTGISKEGSILDVATELKIVNKSGAWYSYGDERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE--PAINTKDD 353
           GREN+K   +E  E+ + I++ +R+   L       E  P   +++D
Sbjct: 299 GRENAKELFKERPELCQEIQNKVREKLSLSDSLPSVEGIPTDQSEED 345


>gi|257063784|ref|YP_003143456.1| protein RecA [Slackia heliotrinireducens DSM 20476]
 gi|256791437|gb|ACV22107.1| protein RecA [Slackia heliotrinireducens DSM 20476]
          Length = 361

 Score =  357 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 194/361 (53%), Positives = 266/361 (73%), Gaps = 8/361 (2%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           +   +I +K  AL+ A  QI + +GKGAIM+LG      E + V+ +G+L LD ALGIGG
Sbjct: 8   KNISDIDNKDVALKNATEQINKKFGKGAIMKLGEDAEKLE-VGVIPTGALSLDAALGIGG 66

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P+GRI+E+YGPE+SGKTTLAL  +A++Q  GG  AF+DAEHALD  YA +LGVD+  LL
Sbjct: 67  VPRGRIIEVYGPEASGKTTLALQILAEAQAAGGIAAFIDAEHALDPTYAARLGVDIDELL 126

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           I+QP TGE+ALE+ DMLVRS A+D IVIDSVAAL PRAEIEG++G++  G+QARLMSQAL
Sbjct: 127 IAQPSTGEEALEVCDMLVRSNAIDCIVIDSVAALVPRAEIEGEIGDASVGLQARLMSQAL 186

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK- 242
           RKL  S+S+S    +FINQ+R KIGVMFG+PETTTGG ALKF++SVR+D+RR+ ++K+K 
Sbjct: 187 RKLAGSLSKSNTTCIFINQLREKIGVMFGNPETTTGGRALKFFASVRIDVRRIETLKNKS 246

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           +   GN+ R KVVKNK+A PF+Q EFD+MYG GIS  G ++D+GV+A +V KSG+W+++ 
Sbjct: 247 NEPCGNRVRAKVVKNKVAPPFRQAEFDLMYGTGISREGCILDMGVEADVVTKSGSWYTYG 306

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
            +RLGQGR+ +K  LR N ++ + IE+ +R+   +        P  +   D  +++   +
Sbjct: 307 EERLGQGRDAAKEMLRTNPDLRDEIEAKVREYFDI------PMPGQSVTVDVAEENAGGL 360

Query: 363 E 363
           E
Sbjct: 361 E 361


>gi|215254339|gb|ACJ64162.1| recombinase A [Vibrio cholerae]
          Length = 331

 Score =  357 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 200/333 (60%), Positives = 265/333 (79%), Gaps = 2/333 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTT
Sbjct: 1   IEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L R
Sbjct: 59  LTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALAR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 119 SGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 178

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+P
Sbjct: 179 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAP 238

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+ N+  +L+EN +
Sbjct: 239 FKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKENPK 298

Query: 323 IAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           IA+ ++  LR+      +  L     +  DD +
Sbjct: 299 IAKTLDKKLREMLLNPENMQLISETSSAADDVE 331


>gi|260221889|emb|CBA30904.1| Protein recA [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 340

 Score =  357 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 211/318 (66%), Positives = 271/318 (85%), Gaps = 2/318 (0%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           ++QI++ +GKG IM+LG  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSG
Sbjct: 1   MAQIEKQFGKGTIMRLGE-GEVIEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSG 59

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTL L  +A+ QK GG CAFVDAEHALD  YA+KLGV+L++LLISQPDTGEQALEI D 
Sbjct: 60  KTTLTLQVVAEMQKQGGQCAFVDAEHALDIQYAQKLGVNLQDLLISQPDTGEQALEIVDS 119

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           LVRSGAVD+I++DSVAALTP+AE+EG+MG+SLPG+QARLMSQALRKLT+ I ++ C+++F
Sbjct: 120 LVRSGAVDLIIVDSVAALTPKAELEGEMGDSLPGLQARLMSQALRKLTAHIKKTNCMVIF 179

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           INQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK  +   GN+T+VKVVK   
Sbjct: 180 INQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGEDSIGNETKVKVVKTS- 238

Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
               +  EFDI++GEGIS  GE+ID+GV A I++KSGAW++++G+++GQGR+N++ FLRE
Sbjct: 239 QPSVQTAEFDILFGEGISRHGEIIDMGVNAGILEKSGAWYAYQGEKIGQGRDNAREFLRE 298

Query: 320 NIEIAENIESLLRQNAGL 337
           N E++  IE+ +R N G+
Sbjct: 299 NPELSVEIENKVRANLGI 316


>gi|17545270|ref|NP_518672.1| recombinase A [Ralstonia solanacearum GMI1000]
 gi|20178050|sp|Q8Y1Y6|RECA_RALSO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|17427561|emb|CAD14079.1| probable protein reca (recombinase a) [Ralstonia solanacearum
           GMI1000]
          Length = 352

 Score =  357 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 215/330 (65%), Positives = 275/330 (83%), Gaps = 2/330 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G   +  E ++VVS+GSLGLD+ALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 25  IEKQFGKGSIMKMGD--AEVEPVQVVSTGSLGLDVALGVGGLPRGRVVEIYGPESSGKTT 82

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +A+ QK GGTCAF+DAEHALD  YA KLGV + +LLISQPDTGEQALEI D LVR
Sbjct: 83  LTLQVVAEMQKLGGTCAFIDAEHALDVTYADKLGVKVPDLLISQPDTGEQALEIADALVR 142

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG+VD+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 143 SGSVDLIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 202

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T+VKVVKNK+A P
Sbjct: 203 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGDEVVGNETKVKVVKNKVAPP 262

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YG G+S  GE+IDLGV+A +V+KSGAW+S+ G+R+GQGR+N + FLREN E
Sbjct: 263 FREAIFDILYGAGVSREGEIIDLGVEAKVVEKSGAWYSYNGERIGQGRDNCREFLRENAE 322

Query: 323 IAENIESLLRQNAGLVADSLLQEPAINTKD 352
           +A  IE+ +R++ G+     +       +D
Sbjct: 323 LAREIENKVREHLGVTPMGAVTLAEEVEED 352


>gi|154173783|ref|YP_001409018.1| recombinase A [Campylobacter curvus 525.92]
 gi|112804083|gb|EAU01427.1| protein RecA [Campylobacter curvus 525.92]
          Length = 364

 Score =  357 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 206/329 (62%), Positives = 264/329 (80%), Gaps = 3/329 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            DK KA+E AL QI + +GKG +++LG +    E IE + +GS+GLD+ALGIGG PKGRI
Sbjct: 18  ADKKKAIELALKQIDKAFGKGTLLRLGDKQ--VEPIESIPTGSIGLDLALGIGGVPKGRI 75

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD  YA  LGVD  NL +SQPD 
Sbjct: 76  IEIYGPESSGKTTLTLHIIAECQKAGGICAFVDAEHALDVKYASNLGVDTDNLYVSQPDF 135

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + L R+GAVD+IV+DSVAALTP++E+EGDMG+   G+QARLMSQALRKLT  
Sbjct: 136 GEQALEIVETLARTGAVDLIVVDSVAALTPKSEVEGDMGDQHVGLQARLMSQALRKLTGI 195

Query: 190 ISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +S+ K  ++FINQ+RMKIG+M +G+PETTTGGNALKFYSSVR+D+R++ ++K  +   GN
Sbjct: 196 LSKMKTTVIFINQIRMKIGMMGYGTPETTTGGNALKFYSSVRIDVRKIATLKQNEEPIGN 255

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T+ KVVKNK+A PFK  EFDIMYGEGIS  GE++D GVK  I+DKSGAWFS+K ++LGQ
Sbjct: 256 RTKAKVVKNKVAPPFKVAEFDIMYGEGISREGEIVDYGVKLDIIDKSGAWFSYKAEKLGQ 315

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGL 337
           GREN+K +L+E+ + A+ I + ++ + G+
Sbjct: 316 GRENAKAYLKEHPQTADEIVASIKGSMGI 344


>gi|296837429|gb|ADH59573.1| DNA recombinase [Burkholderia contaminans]
          Length = 310

 Score =  357 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 220/311 (70%), Positives = 271/311 (87%), Gaps = 1/311 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI
Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  
Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  I
Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299

Query: 328 ESLLRQNAGLV 338
           E+ +R++ G+V
Sbjct: 300 ENRIRESLGVV 310


>gi|70904907|gb|AAZ14031.1| RecA [Burkholderia vietnamiensis]
          Length = 307

 Score =  357 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 218/308 (70%), Positives = 269/308 (87%), Gaps = 1/308 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299

Query: 323 IAENIESL 330
           IA  IE+ 
Sbjct: 300 IAREIENR 307


>gi|328954421|ref|YP_004371755.1| Protein recA [Desulfobacca acetoxidans DSM 11109]
 gi|328454745|gb|AEB10574.1| Protein recA [Desulfobacca acetoxidans DSM 11109]
          Length = 349

 Score =  357 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 201/341 (58%), Positives = 275/341 (80%), Gaps = 1/341 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKSKALE AL+QI++ YG+G+IM+LG+       I V+ +GSL LD+ALGIGG P+GR+V
Sbjct: 8   DKSKALEQALNQIEKQYGRGSIMRLGADERTA-DIGVIPTGSLSLDLALGIGGIPRGRVV 66

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTLALH IA++QK GG  AF+DAEHALD  YAR+LGV  ++LLISQPDTG
Sbjct: 67  EIFGPESSGKTTLALHIIAEAQKLGGVAAFIDAEHALDLNYARRLGVKTEDLLISQPDTG 126

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI ++LVRS A+D IV+DSVAAL PR+EIEGDMG++  G QARLMSQALRKLT++I
Sbjct: 127 EQALEIAEILVRSNALDAIVVDSVAALVPRSEIEGDMGDAQMGSQARLMSQALRKLTAAI 186

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S+  ++FINQ+RMKIG+++G+PETTTGGNALKFY+S RLDIR+   +KD + I G++T
Sbjct: 187 SKSQTSVIFINQIRMKIGLVYGNPETTTGGNALKFYASQRLDIRKGLPLKDGNEIIGSRT 246

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +V+VVKNK+A+PF++ EFD+++G+GIS  G+L+DL    ++V KSG+W+S+  +R+ QGR
Sbjct: 247 KVRVVKNKLAAPFRECEFDVIFGQGISREGDLLDLAADLNLVQKSGSWYSYGSERMAQGR 306

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           EN+K FLRE+ E+   +++ +R   G+  +   +  A+  +
Sbjct: 307 ENAKAFLREHPEVLAELDTQVRAKFGVTKNPGSESEAVKGE 347


>gi|288906375|ref|YP_003431597.1| recombination protein A [Streptococcus gallolyticus UCN34]
 gi|306832421|ref|ZP_07465574.1| recombination protein A [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325979389|ref|YP_004289105.1| recombinase A [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
 gi|288733101|emb|CBI14682.1| recombination protein A [Streptococcus gallolyticus UCN34]
 gi|304425461|gb|EFM28580.1| recombination protein A [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325179317|emb|CBZ49361.1| recombinase A [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 384

 Score =  357 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 197/356 (55%), Positives = 271/356 (76%), Gaps = 6/356 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERKKALDDALKLIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G++  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDNHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KDS  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGSGDQKDSNI 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK  E +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTGELVKIASDLDIIKKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           GQG EN+K +L E+ E+ + I+  +R + GLV ++  ++ A   ++ A  +D  + 
Sbjct: 316 GQGSENAKKYLAEHPEVFDEIDHKVRVHYGLVEETEDEKAADVVEESAATNDNVDE 371


>gi|187927571|ref|YP_001898058.1| recombinase A [Ralstonia pickettii 12J]
 gi|241662073|ref|YP_002980433.1| recombinase A [Ralstonia pickettii 12D]
 gi|309779745|ref|ZP_07674502.1| protein RecA [Ralstonia sp. 5_7_47FAA]
 gi|187724461|gb|ACD25626.1| recA protein [Ralstonia pickettii 12J]
 gi|240864100|gb|ACS61761.1| recA protein [Ralstonia pickettii 12D]
 gi|308921484|gb|EFP67124.1| protein RecA [Ralstonia sp. 5_7_47FAA]
          Length = 352

 Score =  356 bits (914), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 209/330 (63%), Positives = 275/330 (83%), Gaps = 2/330 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G   +  E ++VVS+GSLGLD+ALG+GG P+GR++EIYGPESSGKTT
Sbjct: 25  IEKQFGKGSIMKMGD--AEVEPVQVVSTGSLGLDVALGVGGLPRGRVIEIYGPESSGKTT 82

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +A+ QK GGTCAF+DAEHALD  YA K+GV + +LLISQPDTGEQALEI D LVR
Sbjct: 83  LTLQVVAEMQKLGGTCAFIDAEHALDVTYADKIGVSVPDLLISQPDTGEQALEIADALVR 142

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG+VD+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT +I ++ C+++FINQ
Sbjct: 143 SGSVDLIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTGTIKKTNCMVIFINQ 202

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T+VKVVKNK+A P
Sbjct: 203 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKRGDDVVGNETKVKVVKNKVAPP 262

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YG+G+S  GE+IDLGV+A +V+KSGAW+S+ G+R+GQGR+N + +LREN +
Sbjct: 263 FREAIFDILYGQGVSREGEIIDLGVEAKVVEKSGAWYSYGGERIGQGRDNCREYLRENPD 322

Query: 323 IAENIESLLRQNAGLVADSLLQEPAINTKD 352
           +A  IE+ +R+  G+     +       ++
Sbjct: 323 LAREIENKVREQLGVTPMGAVAVAEEVGEE 352


>gi|15895091|ref|NP_348440.1| recombinase A [Clostridium acetobutylicum ATCC 824]
 gi|18202287|sp|P58254|RECA_CLOAB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|15024789|gb|AAK79780.1|AE007690_7 RECA recombinase, ATPase [Clostridium acetobutylicum ATCC 824]
 gi|325509229|gb|ADZ20865.1| recombinase A [Clostridium acetobutylicum EA 2018]
          Length = 349

 Score =  356 bits (914), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 214/341 (62%), Positives = 275/341 (80%), Gaps = 2/341 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KA++AA+SQI++ +GKGAIM+LG Q  +   I+ +S+G L LDIALGIGG P+GR+V
Sbjct: 4   EKLKAIDAAMSQIEKQFGKGAIMKLGEQDIL--NIDAISTGCLSLDIALGIGGVPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A++QK GG  AF+DAEHALD  YAR LGVD+ NL++SQPDTG
Sbjct: 62  EIYGPESSGKTTVALHILAEAQKKGGAAAFIDAEHALDPQYARALGVDIDNLVVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGA+D+IV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT SI
Sbjct: 122 EQALEIAEALVRSGAIDVIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SKCI +FINQ+R K+G+MFG+PETT GG ALKFY+SVR+DIR++ +IK  + + GN+ 
Sbjct: 182 NKSKCIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRMDIRKIDTIKQGEEMIGNRV 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDIMY EGIS  G ++D+GVK +I+ KSGAWFS+   RLGQGR
Sbjct: 242 RVKVVKNKVAPPFKQAEFDIMYNEGISREGNIVDVGVKENIIQKSGAWFSYGDIRLGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           EN+K+F +ENI+I   +E+ +R+   L    +  E     K
Sbjct: 302 ENAKLFFKENIDIRSEVENKIREKYDLPIQKVKNEKPKIEK 342


>gi|299067887|emb|CBJ39100.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Ralstonia solanacearum CMR15]
          Length = 352

 Score =  356 bits (914), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 216/330 (65%), Positives = 276/330 (83%), Gaps = 2/330 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G   +  E ++VVS+GSLGLD+ALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 25  IEKQFGKGSIMKMGD--AEVEPVQVVSTGSLGLDVALGVGGLPRGRVVEIYGPESSGKTT 82

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +A+ QK GGTCAF+DAEHALD  YA KLGV + +LLISQPDTGEQALEI D LVR
Sbjct: 83  LTLQVVAEMQKLGGTCAFIDAEHALDVTYAGKLGVKVPDLLISQPDTGEQALEIADALVR 142

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG+VD+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 143 SGSVDLIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTGTIKRTNCMVIFINQ 202

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T+VKVVKNK+A P
Sbjct: 203 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKRGDEVVGNETKVKVVKNKVAPP 262

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YG G+S  GE+IDLGV+A +V+KSGAW+S+ G+R+GQGR+N + FLREN E
Sbjct: 263 FREAIFDILYGAGVSREGEIIDLGVEAKVVEKSGAWYSYNGERIGQGRDNCREFLRENAE 322

Query: 323 IAENIESLLRQNAGLVADSLLQEPAINTKD 352
           +A  IE+ +R++ G+V    +       +D
Sbjct: 323 LAREIENKVREHLGVVPMGAITLAEEVEED 352


>gi|227514525|ref|ZP_03944574.1| recombination protein A [Lactobacillus fermentum ATCC 14931]
 gi|227087082|gb|EEI22394.1| recombination protein A [Lactobacillus fermentum ATCC 14931]
          Length = 366

 Score =  356 bits (914), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 190/359 (52%), Positives = 267/359 (74%), Gaps = 7/359 (1%)

Query: 4   RKEMNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
           ++E  + D +  AL+ AL +I++ +GKG+IM++G        I  +SSGSL +D ALG+G
Sbjct: 9   KEEHKLADQRKAALDNALRKIEKNFGKGSIMRMGDAADT--KIATISSGSLAIDEALGVG 66

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G+P+GRI+E+YGPESSGKTT+ALH +A+ Q+ GGT A++DAE+ALD  YA  LGV + +L
Sbjct: 67  GYPRGRIIEMYGPESSGKTTVALHAVAEVQRRGGTAAYIDAENALDPQYATALGVQINDL 126

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           L+SQPDTGEQ LEI D L+ SGAVDI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQA
Sbjct: 127 LLSQPDTGEQGLEIADALIASGAVDIVVVDSVAALVPRAEIEGEMGDTHVGLQARLMSQA 186

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           LRKL+  I+++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++R++IRR   +K+ 
Sbjct: 187 LRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRMEIRRGEQLKNG 246

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
             + GN+ ++KVVKNK+A PF++ E DIMYGEGIS  GEL+D+ V+  +V+KSGAW+S+ 
Sbjct: 247 TDVIGNRAKIKVVKNKVAPPFRKAEVDIMYGEGISKTGELLDMAVEKDLVNKSGAWYSYG 306

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ----EPAINTKDDADKD 357
            +R+GQGREN+K +  ++ +    + + +R   G+  D        EP   T ++A  D
Sbjct: 307 NERIGQGRENAKQWFADHEDAMNELMNKVRVAYGMEPDEAPAAKEGEPQQETIEEASSD 365


>gi|224417674|ref|ZP_03655680.1| recombinase A [Helicobacter canadensis MIT 98-5491]
 gi|253827024|ref|ZP_04869909.1| recombinase A [Helicobacter canadensis MIT 98-5491]
 gi|313141218|ref|ZP_07803411.1| protein recA [Helicobacter canadensis MIT 98-5491]
 gi|253510430|gb|EES89089.1| recombinase A [Helicobacter canadensis MIT 98-5491]
 gi|313130249|gb|EFR47866.1| protein recA [Helicobacter canadensis MIT 98-5491]
          Length = 345

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 217/354 (61%), Positives = 277/354 (78%), Gaps = 16/354 (4%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KA+E A+ QI + +GKGA+++LG +    E I+ +S+GSLGLDIALGIGG PKGRI+
Sbjct: 6   NKQKAIELAIKQIDKAFGKGALIRLGDKP--VEKIDAISTGSLGLDIALGIGGIPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLAL  +A+ QK GG CAF+DAEHALD  YA++LGVD++NLL+SQPD G
Sbjct: 64  EIYGPESSGKTTLALQVVAECQKKGGICAFIDAEHALDVTYAKRLGVDVENLLVSQPDFG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L RSG VD+I+IDSVAALTP++EIEGDMG+   G+QARLMSQALRK+T  I
Sbjct: 124 EQALEILETLTRSGGVDLIIIDSVAALTPKSEIEGDMGDQHVGLQARLMSQALRKVTGVI 183

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIGVM +GSPETTTGGNALKFY+SVR+D+RR+ ++K  +   GN+
Sbjct: 184 HKMNTTVIFINQIRMKIGVMGYGSPETTTGGNALKFYASVRIDVRRIATLKQGEQNIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF+  EFDIM+GEGIS  GELID GVK  IVDKSGAWFS++ ++LGQG
Sbjct: 244 VKAKVVKNKVAPPFRGAEFDIMFGEGISKEGELIDYGVKLDIVDKSGAWFSYEDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           +EN+KIFL+EN EIA+ IE  ++ +             I+  DD   DD +N+E
Sbjct: 304 KENAKIFLKENPEIAQEIEEKIKAS-------------ISVTDDLSADDDENLE 344


>gi|209922124|gb|ACI96110.1| recombinase A [Vibrio cholerae]
          Length = 331

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 201/333 (60%), Positives = 265/333 (79%), Gaps = 2/333 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTT
Sbjct: 1   IEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L R
Sbjct: 59  LTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALAR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 119 SGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 178

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+P
Sbjct: 179 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAP 238

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FK+    IMYG+G +  GELIDLGVK  +V+KSGAW+S+ G ++GQG+ N+  +L+EN E
Sbjct: 239 FKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYHGDKIGQGKANACKYLKENPE 298

Query: 323 IAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           IA+ ++  LR+      +  L     +  DD +
Sbjct: 299 IAKTLDKKLREMLLNPENMQLIAETSSAADDVE 331


>gi|47571282|gb|AAT35798.1| RecA [Mycobacterium szulgai]
          Length = 309

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 194/307 (63%), Positives = 256/307 (83%), Gaps = 2/307 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 5   PDREKALELAMAQIEKSYGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA++LGVD  +LL+SQPDT
Sbjct: 63  IEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKRLGVDTDSLLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T +
Sbjct: 123 GEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+
Sbjct: 183 LNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVK+VKNK++ PFKQ EFDI+YG+GIS  G LID+GV    + KSGAWF+++G++LGQG
Sbjct: 243 TRVKIVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVDQGFIRKSGAWFTYEGEQLGQG 302

Query: 310 RENSKIF 316
           +EN++ F
Sbjct: 303 KENARNF 309


>gi|220907090|ref|YP_002482401.1| recombinase A [Cyanothece sp. PCC 7425]
 gi|254790430|sp|B8HR52|RECA_CYAP4 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|219863701|gb|ACL44040.1| recA protein [Cyanothece sp. PCC 7425]
          Length = 357

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 201/343 (58%), Positives = 260/343 (75%), Gaps = 3/343 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL   ++QI+R +GKG+IM+LG    +   +E V +G+L LD+ALG GG P+GR+
Sbjct: 9   PEKQKALNLVMTQIERSFGKGSIMRLGDATRM--KVETVPTGALPLDLALG-GGLPRGRV 65

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH IA  Q+TGG  AFVDAEHALD  YA  LGVD++NLLISQPDT
Sbjct: 66  VEIYGPESSGKTTLALHAIAAVQQTGGIAAFVDAEHALDPAYAAVLGVDIQNLLISQPDT 125

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GE ALEI D LVRS AVD++VIDSVAAL P+AEIEGDMG++  G+QARLMSQALRK+T +
Sbjct: 126 GETALEIVDQLVRSTAVDVVVIDSVAALVPKAEIEGDMGDAHVGLQARLMSQALRKITGN 185

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I ++ CI++F+NQ+R KIGV +G+PETTTGGNALKFY+SVRLDIRRV ++K      GN+
Sbjct: 186 IGKTGCIVIFLNQLRQKIGVTYGNPETTTGGNALKFYASVRLDIRRVQTLKKGTEEFGNR 245

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKV KNK+A PF+  EFDI++G+GIS  G ++D+  +  +V++ GAW+S+ G+ L QG
Sbjct: 246 VKVKVAKNKVAPPFRVAEFDIIFGKGISRLGCILDMAEETGVVNRKGAWYSYNGENLAQG 305

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           R+N+  ++ EN E A NIE L+RQ   + A       A N  D
Sbjct: 306 RDNTIKYMEENPEFARNIEQLVRQKLEMGAVVSANSVAANETD 348


>gi|150171066|emb|CAO01516.1| DNA recombination protein [Burkholderia arboris]
          Length = 322

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 220/312 (70%), Positives = 272/312 (87%), Gaps = 1/312 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRMGD-GDATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI
Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  
Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  I
Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299

Query: 328 ESLLRQNAGLVA 339
           E+ +R++ G+V+
Sbjct: 300 ENRIRESLGVVS 311


>gi|325853060|ref|ZP_08171209.1| RecA protein [Prevotella denticola CRIS 18C-A]
 gi|325484434|gb|EGC87355.1| RecA protein [Prevotella denticola CRIS 18C-A]
          Length = 341

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 209/323 (64%), Positives = 267/323 (82%), Gaps = 2/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+AA+S+I++ +GKG+IM++G +    E +EV+ +GS+ LD ALG+GG+P+GRI+E
Sbjct: 15  KLKALQAAMSKIEKDFGKGSIMRMGDEQ--IENVEVIPTGSVALDTALGVGGYPRGRIIE 72

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD GE
Sbjct: 73  IYGPESSGKTTLAIHAIAEAQKQGGIAAFIDAEHAFDRFYAEKLGVDVDNLWISQPDNGE 132

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RS A+DI+V+DSVAALTP+ EIEGDMG+S  G+QARLMSQALRKLTS+IS
Sbjct: 133 QALEIADQLIRSSAIDILVVDSVAALTPKKEIEGDMGDSAVGLQARLMSQALRKLTSTIS 192

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGVMFG+PETTTGGNALKFYSSVRLDIRRV SIKD D + GNQ R
Sbjct: 193 KTNTCCIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRVTSIKDGDQVIGNQVR 252

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF++ EF+I +GEGIS  GE++DLGV+  I+ KSG+WFS+ G +L QGR+
Sbjct: 253 VKVVKNKVAPPFRKAEFEITFGEGISKIGEIVDLGVQYGIIQKSGSWFSYNGTKLAQGRD 312

Query: 312 NSKIFLRENIEIAENIESLLRQN 334
            +K  +++N E+AE +E L++Q 
Sbjct: 313 ATKTMIKDNPELAEELEGLIKQA 335


>gi|73662789|ref|YP_301570.1| recombinase A [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
 gi|123775345|sp|Q49X73|RECA_STAS1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|72495304|dbj|BAE18625.1| RecA recombinase [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
          Length = 349

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 199/348 (57%), Positives = 262/348 (75%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+  +  +++ +GKGA+M+LG   +           S+ LD ALG+GG+PKGRIV
Sbjct: 4   DRQKALDTVIKNMEKSFGKGAVMKLGDNKARKVSSVSSG--SVTLDNALGVGGYPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD +YA  LGVD++NL +SQPD G
Sbjct: 62  EIYGPESSGKTTVALHAIAEVQKNGGVAAFIDAEHALDPVYAEALGVDIQNLYLSQPDHG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI +  VRSGAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 122 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S    VFINQ+R K+GVMFG+PE T GG ALKFYSSVRL++RR   +K    I GN+T
Sbjct: 182 SKSNTTAVFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYG+GIS  GELIDLG +  IV+KSGAW+S+ G+R+GQG+
Sbjct: 242 KIKVVKNKVAPPFRVAEVDIMYGKGISKEGELIDLGAEHEIVNKSGAWYSYNGERMGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           EN K++L+EN  I E I+  LR+  G+    + ++ A +     D+++
Sbjct: 302 ENVKLYLKENPAIREEIDQKLREKLGIFDGDVEEKEAESPATLFDEEE 349


>gi|294626629|ref|ZP_06705226.1| recombinase A [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|294665632|ref|ZP_06730909.1| recombinase A [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292599049|gb|EFF43189.1| recombinase A [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292604578|gb|EFF47952.1| recombinase A [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 344

 Score =  356 bits (913), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 223/349 (63%), Positives = 282/349 (80%), Gaps = 10/349 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AALSQI++ +GKG++M++G    + E +EV+ +GSL LDIALGIGG PKGR+V
Sbjct: 4   NKKRALSAALSQIEKQFGKGSVMRMGD--RVIEAVEVIPTGSLMLDIALGIGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAECQKNGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VDI+V+DSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSGSVDIVVVDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  ++VFINQ+RMKIGVM    SPE TTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 182 KRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELID+GV+A +VDK+GAW+S+  +R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVDKAGAWYSYGDERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           G++N++ +LR+N ++A  +E+ LR+           E      DD DK+
Sbjct: 302 GKDNARTYLRDNPQVATRLEAELREKF------QPAEAPREAGDDEDKE 344


>gi|328675288|gb|AEB27963.1| RecA protein [Francisella cf. novicida 3523]
          Length = 359

 Score =  356 bits (913), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 217/324 (66%), Positives = 274/324 (84%), Gaps = 1/324 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           + K KALE+ALSQI++ +GKG+IM+LG Q ++   I+V+ SG + LD+ALGIGG+PKGRI
Sbjct: 1   MSKEKALESALSQIEKQFGKGSIMRLGDQETVH-DIDVIPSGIIALDVALGIGGYPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYG ESSGKTTL L  IAQ QK GGT AFVDAEHALD  YA+ LGVD+ NL++SQPDT
Sbjct: 60  IEIYGHESSGKTTLTLLAIAQCQKQGGTAAFVDAEHALDPKYAKLLGVDVDNLIVSQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSG VDI+VIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT++
Sbjct: 120 GEQALEIADMLVRSGGVDIVVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTAN 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I RS  +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRL++R+ GSIKD   ++GN+
Sbjct: 180 IKRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLEVRKGGSIKDGIDVSGNE 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VK+VKNK+A PFKQ +F+++YGEGIS   ELIDLG K +I++KSGAW+S+KG+++GQG
Sbjct: 240 IKVKIVKNKVAPPFKQADFELIYGEGISLEAELIDLGAKYNIIEKSGAWYSYKGKKIGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQ 333
           +E SK +L+ENI   + IE  + +
Sbjct: 300 KEKSKEYLKENIAERDEIERAILE 323


>gi|296802992|gb|ADH51572.1| DNA recombinase [Burkholderia contaminans]
 gi|296803110|gb|ADH51631.1| DNA recombinase [Burkholderia contaminans]
          Length = 308

 Score =  356 bits (913), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 218/309 (70%), Positives = 269/309 (87%), Gaps = 1/309 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNA 335
           IE+ +R++ 
Sbjct: 300 IENRIRESL 308


>gi|303253281|ref|ZP_07339430.1| recombinase A [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|307248166|ref|ZP_07530194.1| hypothetical protein appser2_11470 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302647963|gb|EFL78170.1| recombinase A [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|306855343|gb|EFM87518.1| hypothetical protein appser2_11470 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 376

 Score =  356 bits (913), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 223/359 (62%), Positives = 283/359 (78%), Gaps = 6/359 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K+++   K KAL AAL+QI++ +GKG+IM+LG   ++   IE VS+GS+GLD ALGIGG 
Sbjct: 15  KQIDPEQKEKALAAALAQIEKQFGKGSIMRLGDTQAL--DIEAVSTGSIGLDAALGIGGL 72

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P GRIVEIYGPESSGKTTL L  IAQ+QK+G TCAF+DAEHALD +YARKLGVD   LLI
Sbjct: 73  PMGRIVEIYGPESSGKTTLTLSVIAQAQKSGKTCAFIDAEHALDPVYARKLGVDTDALLI 132

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALR
Sbjct: 133 SQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALR 192

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT++I  + C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G +KD D 
Sbjct: 193 KLTANIKATNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRSGVVKDGDE 252

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + G++T+VK+VKNK+A PF++V+FDIMYGEGIS   EL+ L      + K+GAWFS++G 
Sbjct: 253 VVGSETKVKIVKNKVAPPFREVQFDIMYGEGISRMNELLILAEANGFIQKAGAWFSYEGT 312

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           ++GQG+ N+  +L+EN EIAE IE  +R+       S  ++     ++  D DD ++ E
Sbjct: 313 KIGQGKNNAIKWLKENPEIAEKIEQDIREQL----ISTPEKTPAGEQNVLDADDVNDFE 367


>gi|296837437|gb|ADH59577.1| DNA recombinase [Burkholderia contaminans]
          Length = 308

 Score =  356 bits (913), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 218/309 (70%), Positives = 269/309 (87%), Gaps = 1/309 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNA 335
           IE+ +R++ 
Sbjct: 300 IENRIRESL 308


>gi|258592081|emb|CBE68386.1| Recombinase A (recA) [NC10 bacterium 'Dutch sediment']
          Length = 351

 Score =  356 bits (913), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 211/329 (64%), Positives = 279/329 (84%), Gaps = 1/329 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ +AL+ A++QI+++YGKG+IM++G+ G++   I  +S+GSL LD ALG+GG P+GRI+
Sbjct: 13  ERERALDLAIAQIEKLYGKGSIMRMGTSGALV-PIAAISTGSLELDAALGVGGVPRGRII 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTLALH IA++Q+ GG+ AFVDAEHALD+ YAR LGV + ++LISQPDTG
Sbjct: 72  EIFGPESSGKTTLALHIIAEAQRVGGSAAFVDAEHALDAAYARSLGVKIDDVLISQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT++LVRSGA+D++VIDSVAAL PRAEIEG+MGE   G+QARLMSQALRKLT++I
Sbjct: 132 EQALEITEVLVRSGAIDVVVIDSVAALVPRAEIEGEMGEPTMGLQARLMSQALRKLTAAI 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+SK  ++FINQ+R KIGVMFG+PETTTGG ALKFYSSVRLDIRR+ SIK+ +++ G++ 
Sbjct: 192 SKSKTCVIFINQLREKIGVMFGNPETTTGGRALKFYSSVRLDIRRISSIKEGENVVGSRV 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PFK+ EFD++YGEGIS  G ++DLGV+  I++KSG+WFS+ G+R+GQGR
Sbjct: 252 KVKVVKNKVAPPFKEAEFDLIYGEGISRTGGILDLGVEHKIIEKSGSWFSYTGERIGQGR 311

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339
           EN+K FL+EN  +   IE  +R   GL A
Sbjct: 312 ENAKRFLQENAALCNEIEVKVRAALGLTA 340


>gi|259502853|ref|ZP_05745755.1| recombination protein A [Lactobacillus antri DSM 16041]
 gi|259169220|gb|EEW53715.1| recombination protein A [Lactobacillus antri DSM 16041]
          Length = 369

 Score =  356 bits (913), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 187/348 (53%), Positives = 263/348 (75%), Gaps = 2/348 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL +I++ +GKG+IM++G    +   I  +SSGSL +D ALG+GG+P+GRIVE
Sbjct: 17  RKAALDKALQKIEKDFGKGSIMRMGDAADM--KIATISSGSLAIDKALGVGGYPRGRIVE 74

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH +A+ Q+ GGT A++DAE+ALD  YA  LGVD+ NLL+SQPDTGE
Sbjct: 75  IYGPESSGKTTVALHAVAEVQRQGGTVAYIDAENALDPQYAEALGVDVDNLLLSQPDTGE 134

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           + L I D L+ + A+D++VIDSVAAL P+AEI+GDMG+   G+QARLMSQALRKL+  I+
Sbjct: 135 EGLAIADALIATSAIDLVVIDSVAALVPQAEIDGDMGDHHVGLQARLMSQALRKLSGEIN 194

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++K I +FINQ+R K+GVMFG+PETTTGG ALKFYS++R++IRR   IK+   + G++ +
Sbjct: 195 KTKTIAIFINQIREKVGVMFGNPETTTGGRALKFYSTIRMEIRRAEQIKNGTDVVGSKAK 254

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNK+A PFK+ E DIMYGEGIS  GEL+D+ V+  +V KSGAW+S+  +R+GQGRE
Sbjct: 255 VKIVKNKVAPPFKRCEVDIMYGEGISKTGELLDMAVEQDLVKKSGAWYSYGNERIGQGRE 314

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           N+K +L ++ +    + + +R   G+      ++PA +    A + +T
Sbjct: 315 NAKKWLADHPDSMMELMNKVRVANGMKPLEESKKPADDGDTPAGQQET 362


>gi|299142502|ref|ZP_07035633.1| recA protein [Prevotella oris C735]
 gi|298575937|gb|EFI47812.1| recA protein [Prevotella oris C735]
          Length = 339

 Score =  356 bits (913), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 209/322 (64%), Positives = 268/322 (83%), Gaps = 2/322 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL+AA+S+I++ +GKG+IM++G +    E +E + +GS+GLD+ALG+GG+P+GRI
Sbjct: 11  SEKLKALQAAMSKIEKDFGKGSIMRMGDEQ--IENVETIPTGSIGLDVALGVGGYPRGRI 68

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD 
Sbjct: 69  IEIYGPESSGKTTLAIHAIAEAQKKGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDN 128

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQAL+I D L+RS AVDI+V+DSVAALTP+ EIEGDMG+++ G+QARLMSQALRKLTS+
Sbjct: 129 GEQALQIADELIRSSAVDILVVDSVAALTPKKEIEGDMGDNVVGLQARLMSQALRKLTST 188

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS++    +FINQ+R KIGVMFGSPETTTGGNALKFYSSVRLDIRRV S+KD D+I GNQ
Sbjct: 189 ISKTNTCCIFINQLREKIGVMFGSPETTTGGNALKFYSSVRLDIRRVTSLKDGDNIIGNQ 248

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            RVKVVKNK+A PF++ EF+IM+GEGIS  GE++DLGV+  I+ KSG+WFS+   +L QG
Sbjct: 249 VRVKVVKNKVAPPFRKAEFEIMFGEGISKVGEILDLGVEYGIIQKSGSWFSYNSSKLAQG 308

Query: 310 RENSKIFLRENIEIAENIESLL 331
           R+ +K  LR+N E+ E +E L+
Sbjct: 309 RDATKALLRDNPELCEELEGLI 330


>gi|307257197|ref|ZP_07538969.1| hypothetical protein appser10_11970 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864359|gb|EFM96270.1| hypothetical protein appser10_11970 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 376

 Score =  356 bits (913), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 223/358 (62%), Positives = 282/358 (78%), Gaps = 9/358 (2%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K+++   K KAL AAL+QI++ +GKG+IM+LG   ++   IE VS+GS+GLD ALGIGG 
Sbjct: 15  KQIDPEQKEKALAAALAQIEKQFGKGSIMRLGDTQAL--DIEAVSTGSIGLDAALGIGGL 72

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P GRIVEIYGPESSGKTTL L  IAQ+QK+G TCAF+DAEHALD +YARKLGVD   LLI
Sbjct: 73  PMGRIVEIYGPESSGKTTLTLSVIAQAQKSGKTCAFIDAEHALDPVYARKLGVDTDALLI 132

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALR
Sbjct: 133 SQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALR 192

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT++I  + C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G +KD D 
Sbjct: 193 KLTANIKATNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRSGVVKDGDE 252

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + G++T+VK+VKNK+A PF++V+FDIMYGEGIS   EL+ L      + K+GAWFS++G 
Sbjct: 253 VVGSETKVKIVKNKVAPPFREVQFDIMYGEGISRMNELLILAEANGFIQKAGAWFSYEGT 312

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           ++GQG+ N+  +L+EN EIAE IE  +R+        L+  P   +  + +  D D+V
Sbjct: 313 KIGQGKNNAIKWLKENPEIAEKIEQDIREQ-------LISTPEKTSAGEQNVLDADDV 363


>gi|227499297|ref|ZP_03929409.1| recombination protein A [Anaerococcus tetradius ATCC 35098]
 gi|227218648|gb|EEI83882.1| recombination protein A [Anaerococcus tetradius ATCC 35098]
          Length = 345

 Score =  356 bits (913), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 206/343 (60%), Positives = 262/343 (76%), Gaps = 2/343 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+ A   I++ YGKGAIM++G    +   +  + +G++ LDIALGIGG P+GR++
Sbjct: 4   EKQKALDQAFKNIEKKYGKGAIMKMGDAPRV--SVSAIPTGAVNLDIALGIGGIPRGRVI 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTLALH +A+ QK   TCAF+DAEHALD+ YA  LGVD+ NL++SQPDTG
Sbjct: 62  EIFGPESSGKTTLALHIVAEDQKQDQTCAFIDAEHALDAEYAENLGVDIDNLILSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ L+I + LVRSGAVD+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALR+LT  I
Sbjct: 122 EQGLDIAESLVRSGAVDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRRLTGVI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++S   ++FINQ+R K+GVMFGSPETT GG ALKFYSSVRLDIRR+ +I   D   G++T
Sbjct: 182 AKSNTTVIFINQLREKVGVMFGSPETTPGGRALKFYSSVRLDIRRIKTITQGDDSIGSRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK VEFDIMYG+GIS  G L+D  V  +IVDK+G+WFS+K ++LGQGR
Sbjct: 242 RVKVVKNKVAPPFKVVEFDIMYGKGISKSGVLLDTAVDLNIVDKAGSWFSYKDEKLGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           EN K +L  N EI   I+S +R    +  D    E   N +++
Sbjct: 302 ENVKDYLEANPEIMAQIDSDVRNTIQVADDGEKTEEVENIENE 344


>gi|126208613|ref|YP_001053838.1| recombinase A [Actinobacillus pleuropneumoniae L20]
 gi|165976570|ref|YP_001652163.1| recombinase A [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|190150471|ref|YP_001968996.1| recombinase A [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|303250107|ref|ZP_07336309.1| recombinase A [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307246058|ref|ZP_07528140.1| hypothetical protein appser1_12610 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307250399|ref|ZP_07532346.1| hypothetical protein appser4_11800 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307252781|ref|ZP_07534672.1| hypothetical protein appser6_12950 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307255040|ref|ZP_07536858.1| hypothetical protein appser9_12740 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259476|ref|ZP_07541201.1| hypothetical protein appser11_12730 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307263815|ref|ZP_07545420.1| hypothetical protein appser13_12250 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|126097405|gb|ABN74233.1| recombinase A [Actinobacillus pleuropneumoniae serovar 5b str. L20]
 gi|165876671|gb|ABY69719.1| RecA protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|189915602|gb|ACE61854.1| recombinase A [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|302651170|gb|EFL81324.1| recombinase A [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306852993|gb|EFM85216.1| hypothetical protein appser1_12610 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306857528|gb|EFM89637.1| hypothetical protein appser4_11800 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306859813|gb|EFM91835.1| hypothetical protein appser6_12950 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306861913|gb|EFM93889.1| hypothetical protein appser9_12740 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866412|gb|EFM98275.1| hypothetical protein appser11_12730 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306870804|gb|EFN02543.1| hypothetical protein appser13_12250 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 376

 Score =  356 bits (913), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 223/359 (62%), Positives = 284/359 (79%), Gaps = 6/359 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K+++   K KAL AAL+QI++ +GKG+IM+LG   ++   IE VS+GS+GLD ALGIGG 
Sbjct: 15  KQIDPEQKEKALAAALAQIEKQFGKGSIMRLGDTQAL--DIEAVSTGSIGLDAALGIGGL 72

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P GRIVEIYGPESSGKTTL L  IAQ+QK+G TCAF+DAEHALD +YARKLGVD   LLI
Sbjct: 73  PMGRIVEIYGPESSGKTTLTLSVIAQAQKSGKTCAFIDAEHALDPVYARKLGVDTDALLI 132

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALR
Sbjct: 133 SQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALR 192

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT++I  + C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G +KD D 
Sbjct: 193 KLTANIKATNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRSGVVKDGDE 252

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + G++T+VK+VKNK+A PF++V+FDIMYGEGIS   EL+ L      + K+GAWFS++G 
Sbjct: 253 VVGSETKVKIVKNKVAPPFREVQFDIMYGEGISRMNELLILAEANGFIQKAGAWFSYEGT 312

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           ++GQG+ N+  +L+EN EIAE IE  +R+       S  ++ +   ++  D DD ++ E
Sbjct: 313 KIGQGKNNAIKWLKENPEIAEKIEQDIREQL----ISTPEKTSAGEQNVLDADDVNDFE 367


>gi|223041840|ref|ZP_03612028.1| recombinase A [Actinobacillus minor 202]
 gi|223017333|gb|EEF15756.1| recombinase A [Actinobacillus minor 202]
          Length = 373

 Score =  356 bits (913), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 221/359 (61%), Positives = 284/359 (79%), Gaps = 6/359 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           ++ +   + KAL AAL+QI++ +GKG+IM+LG   ++   IE VS+GSLGLD+ALGIGG 
Sbjct: 14  RQTDPEQREKALAAALAQIEKQFGKGSIMKLGQTQNL--DIEAVSTGSLGLDMALGIGGL 71

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P GRIVEI+GPESSGKTTL L TIAQ+QK G TCAF+DAEHALD +YARKLGV+  +LLI
Sbjct: 72  PMGRIVEIFGPESSGKTTLTLSTIAQAQKAGKTCAFIDAEHALDPVYARKLGVNTDDLLI 131

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALR
Sbjct: 132 SQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALR 191

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT +I  + C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G +KD D+
Sbjct: 192 KLTGNIKNTNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGVVKDGDN 251

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           I G++T+VKVVKNK+A PF++V+FDIMYGEGI+   EL+ L  K   + K+GAWFS++G 
Sbjct: 252 IIGSETKVKVVKNKVAPPFREVQFDIMYGEGIARTNELLILAEKQGFIKKAGAWFSYEGD 311

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           ++GQG+ N+  +L E+ E+A  IE+ LR+      ++ L+        + D +D D +E
Sbjct: 312 KIGQGKNNAIKWLNEHPEVASKIEADLRELFMKNPNTTLE----LDDKNVDAEDVDTIE 366


>gi|296837427|gb|ADH59572.1| DNA recombinase [Burkholderia contaminans]
          Length = 310

 Score =  356 bits (912), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 218/311 (70%), Positives = 270/311 (86%), Gaps = 1/311 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GK +IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKASIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGL 337
           IE+ +R++ G+
Sbjct: 300 IENRIRESLGV 310


>gi|53729046|ref|ZP_00134135.2| COG0468: RecA/RadA recombinase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
          Length = 376

 Score =  356 bits (912), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 223/359 (62%), Positives = 284/359 (79%), Gaps = 6/359 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K+++   K KAL AAL+QI++ +GKG+IM+LG   ++   IE VS+GS+GLD ALGIGG 
Sbjct: 15  KQIDPEQKEKALAAALAQIEKQFGKGSIMRLGDTQAL--DIEAVSTGSIGLDAALGIGGL 72

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P GRIVEIYGPESSGKTTL L  IAQ+QK+G TCAF+DAEHALD +YARKLGVD   LLI
Sbjct: 73  PMGRIVEIYGPESSGKTTLTLSVIAQAQKSGKTCAFIDAEHALDPVYARKLGVDTDALLI 132

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALR
Sbjct: 133 SQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALR 192

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT++I  + C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G +KD D 
Sbjct: 193 KLTANIKATNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRSGVVKDGDE 252

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + G++T+VK+VKNK+A PF++V+FDIMYGEGIS   EL+ L      + K+GAWFS++G 
Sbjct: 253 VVGSETKVKIVKNKVAPPFREVQFDIMYGEGISRMNELLILAEANGFIQKAGAWFSYEGT 312

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           ++GQG+ N+  +L+EN EIAE IE  +R+       S  ++ +   ++  D DD ++ E
Sbjct: 313 KIGQGKNNAIKWLKENPEIAEKIEQDIREQL----ISTPEKTSAGEQNVLDADDVNDFE 367


>gi|307244353|ref|ZP_07526466.1| protein RecA [Peptostreptococcus stomatis DSM 17678]
 gi|306492254|gb|EFM64294.1| protein RecA [Peptostreptococcus stomatis DSM 17678]
          Length = 349

 Score =  356 bits (912), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 201/342 (58%), Positives = 272/342 (79%), Gaps = 2/342 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL  AL +I++ +GKG++M+LG    +   ++ + +G +GLDIA G+GG P+GRI+
Sbjct: 6   NKMEALNEALKKIEKEHGKGSVMKLGETTGL--DVDSIPTGVIGLDIAAGVGGLPRGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ LH IA++QK  G  AF+DAEHALD +YAR LGVD+ NL+ISQPDTG
Sbjct: 64  EVYGPESSGKTTVTLHCIAEAQKRNGIAAFIDAEHALDPVYARSLGVDVDNLIISQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL+I + L+RSGA+DI+VIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT SI
Sbjct: 124 EQALDIAESLIRSGAIDILVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGSI 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+++FINQ+R K+GVMFG+PETTTGG ALKF+S++R+++RRV SIK  D I GN+T
Sbjct: 184 KKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFFSTMRIEVRRVDSIKQGDKILGNRT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+K+VKNK+A PFKQ+EFDIMYG GIS  G+L+D+ V   ++ K+GAW+S+  +++GQGR
Sbjct: 244 RIKIVKNKVAPPFKQIEFDIMYGTGISKSGDLLDVAVGIDVIKKAGAWYSYNDEKMGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           ENSK FL EN +IA  IE+ +R+  GL  D +    +   ++
Sbjct: 304 ENSKNFLEENEDIAAEIEAKVREYYGLPIDGVEVASSSKEEE 345


>gi|157326893|gb|ABV44559.1| RecA [Burkholderia cenocepacia]
          Length = 308

 Score =  356 bits (912), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 218/309 (70%), Positives = 269/309 (87%), Gaps = 1/309 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L
Sbjct: 1   QFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTL 59

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+
Sbjct: 60  QVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGS 119

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RM
Sbjct: 120 IDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRM 179

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++
Sbjct: 180 KIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRE 239

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
             FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA 
Sbjct: 240 AIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAR 299

Query: 326 NIESLLRQN 334
            IE+ +R++
Sbjct: 300 EIENRIRES 308


>gi|313672067|ref|YP_004050178.1| reca protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312938823|gb|ADR18015.1| RecA protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 333

 Score =  356 bits (912), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 197/327 (60%), Positives = 264/327 (80%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+AALS+I++ +GKGA+M+LG +    E   V+ +G L LD ALG+GG P+GRI+
Sbjct: 4   EKLKALDAALSKIEKDFGKGAVMKLGDKA--IEKPPVIPTGILTLDAALGVGGIPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+G ESSGKTT+A H IA++QK GG  AF+DAEHA+D +YA+ +GVD+ NL +SQPD G
Sbjct: 62  EIFGSESSGKTTVAFHMIAEAQKLGGIAAFIDAEHAMDPVYAKAIGVDVDNLFVSQPDNG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI + LVRSGA+DIIVIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT+ +
Sbjct: 122 EAALEIAETLVRSGAIDIIVIDSVAALTPKAEIEGDMGDSFMGLQARLMSQALRKLTAIV 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK  LVFINQ R KIG+ +G+PETTTGGNALKFY+++R++++R G +KDK+   G++T
Sbjct: 182 NKSKTALVFINQTRQKIGISYGNPETTTGGNALKFYATIRIEVKRSGHLKDKEENVGSET 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
             KVVKNK+A PFKQ +FDI+YG G+S  G LIDLGV+  ++ KSGAWFS+K  ++GQG+
Sbjct: 242 VAKVVKNKVAPPFKQAKFDILYGTGVSKEGILIDLGVEEGLIGKSGAWFSYKDTKIGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN++ +L++N EI + IE  +R+  GL
Sbjct: 302 ENARQYLKDNPEIMKEIELEIRKKLGL 328


>gi|90962105|ref|YP_536021.1| recombinase A [Lactobacillus salivarius UCC118]
 gi|227891127|ref|ZP_04008932.1| recombination protein A [Lactobacillus salivarius ATCC 11741]
 gi|90821299|gb|ABD99938.1| Recombinase A [Lactobacillus salivarius UCC118]
 gi|227867001|gb|EEJ74422.1| recombination protein A [Lactobacillus salivarius ATCC 11741]
 gi|300214791|gb|ADJ79207.1| Protein recA [Lactobacillus salivarius CECT 5713]
          Length = 381

 Score =  356 bits (912), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 199/359 (55%), Positives = 269/359 (74%), Gaps = 8/359 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+AAL +I++ +GKG+IM++G  G +   I  +SSGS+ +D  LG+GG+P+GRI+
Sbjct: 15  ERLKALDAALKKIEKKFGKGSIMKMG--GKVDTKISTISSGSIAIDAGLGVGGYPRGRII 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  YA  LGV++  LL+SQPDTG
Sbjct: 73  EIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPAYATALGVNIDELLLSQPDTG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGA+DIIV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I
Sbjct: 133 EQGLEIADALVSSGAIDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGTI 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K + +FINQ+R K+GVMFG+PETT GG ALKFYS+VR+++RR  +IK K  I GN+T
Sbjct: 193 NKTKTVAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRMEVRRSEAIKAKSEIIGNRT 252

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++K VKNK+A PFK  E DIMYGEGIS  GEL+D+ V+  I+ KSG+WFS+   R+GQGR
Sbjct: 253 KIKFVKNKVAPPFKVAEVDIMYGEGISKTGELLDMAVEKDIIHKSGSWFSYGDTRIGQGR 312

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL------VADSLLQEPAINTKDDADKDDTDNVE 363
           EN+K +L E+ +    I   +R+  G+      V +S  +    +  DD   D  D+ E
Sbjct: 313 ENAKEYLSEHEDEMNEINIKVREAYGIPDENGNVPESQDKNTTQSAMDDKAADIDDSEE 371


>gi|258404448|ref|YP_003197190.1| recombinase A [Desulfohalobium retbaense DSM 5692]
 gi|257796675|gb|ACV67612.1| recA protein [Desulfohalobium retbaense DSM 5692]
          Length = 355

 Score =  356 bits (912), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 208/359 (57%), Positives = 279/359 (77%), Gaps = 6/359 (1%)

Query: 1   MDYRKEMNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIAL 59
           M  +  ++  + + +AL+ AL+ I+R YG+GA+M+L       + +  + +GS+GLD+AL
Sbjct: 1   MARKPNVSPEELRKEALDTALTTIERKYGQGAVMRLSDDA--HQAVPFIPTGSVGLDLAL 58

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           GIGG P+GR+VEIYGPESSGKTTLAL  IAQ+QK GG  AFVDAEHALD  YAR+LGV  
Sbjct: 59  GIGGIPRGRVVEIYGPESSGKTTLALEIIAQAQKGGGNAAFVDAEHALDVNYARRLGVKT 118

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
             L++SQPD GEQALEI D+LVRSGA+D+IV+DSVAAL P+AE+EG+MGE+  G QARLM
Sbjct: 119 DELVVSQPDYGEQALEIADLLVRSGALDVIVVDSVAALIPQAELEGNMGETQVGSQARLM 178

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           S A+RKLT SI RSK  ++FINQ+RMKI    +GSPETTTGGNALKFYSSVRLDIRR+ +
Sbjct: 179 SHAMRKLTGSIHRSKTSVIFINQIRMKIGMTGYGSPETTTGGNALKFYSSVRLDIRRIQT 238

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           +KDK+   GN+ RVKVVKNK+A PF++ +FDI+YG GIS  GEL+D+GV+  IVDKSG+W
Sbjct: 239 LKDKEEFYGNRARVKVVKNKVAPPFREAQFDILYGTGISKEGELLDMGVEHGIVDKSGSW 298

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           +++  +RLGQG+EN + FL++N EI+++IE+ L  + G+  +   QEPA +  ++  ++
Sbjct: 299 YAYGSERLGQGKENVRAFLQQNPEISQDIENKLLVHLGMKDNG--QEPAADGGEEQTEE 355


>gi|308212808|gb|ADO21632.1| RecA [Burkholderia arboris]
 gi|308212810|gb|ADO21633.1| RecA [Burkholderia arboris]
 gi|308212812|gb|ADO21634.1| RecA [Burkholderia arboris]
          Length = 316

 Score =  356 bits (912), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 220/311 (70%), Positives = 271/311 (87%), Gaps = 1/311 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+VD+
Sbjct: 60  AELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSVDM 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG
Sbjct: 120 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  F
Sbjct: 180 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 239

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           DI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE
Sbjct: 240 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 299

Query: 329 SLLRQNAGLVA 339
           + +R++ G+V+
Sbjct: 300 NRIRESLGVVS 310


>gi|317056864|ref|YP_004105331.1| recA protein [Ruminococcus albus 7]
 gi|315449133|gb|ADU22697.1| recA protein [Ruminococcus albus 7]
          Length = 398

 Score =  356 bits (912), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 190/327 (58%), Positives = 255/327 (77%), Gaps = 2/327 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +  +K KALE A++ I++ +GKGAIM+LG   ++   +E + +GS+ LD+ALGIGG P+G
Sbjct: 19  DAEEKKKALETAIAFIEKQFGKGAIMKLGDARAM--DVEAIPTGSMMLDMALGIGGVPRG 76

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EIYGPESSGKTT+ALH IA++QK GG  AF+D EHALD +YA+ LGVD+ ++L+SQP
Sbjct: 77  RIIEIYGPESSGKTTVALHIIAETQKMGGEVAFIDVEHALDPVYAKNLGVDIDSMLVSQP 136

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D+GEQALEI + L RSGA+D IVIDSVAA+  +AEI+G+MG++  G  ARLMSQA+RKLT
Sbjct: 137 DSGEQALEIAEALARSGAIDCIVIDSVAAMVTKAEIDGEMGDTHVGQLARLMSQAMRKLT 196

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
             +S+S    VFINQ+R KIGVM+G+PETT GG ALKFY+SVR+++RR   IKD   + G
Sbjct: 197 GVVSKSNTTCVFINQVREKIGVMYGNPETTPGGRALKFYASVRIEVRRGEQIKDGGEVLG 256

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+T+ KVVKNK+A PFK+ EFDIMYG+GIS  GE++D  V   IV K GAWFS++  +LG
Sbjct: 257 NRTKCKVVKNKVAPPFKECEFDIMYGKGISRVGEVLDTAVDLGIVKKGGAWFSYEDYKLG 316

Query: 308 QGRENSKIFLRENIEIAENIESLLRQN 334
           QGR+NSK FL ++ +I   IE+ ++ +
Sbjct: 317 QGRDNSKQFLLDHPDIMAEIENKIKAS 343


>gi|227591|prf||1707271D recA gene
          Length = 324

 Score =  356 bits (912), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 205/310 (66%), Positives = 260/310 (83%), Gaps = 2/310 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 5   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 63  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 123 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD + + G++T
Sbjct: 183 KQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVGSET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 243 RVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 302

Query: 311 ENSKIFLREN 320
            N+  FL+EN
Sbjct: 303 ANACNFLKEN 312


>gi|290890930|ref|ZP_06553994.1| hypothetical protein AWRIB429_1384 [Oenococcus oeni AWRIB429]
 gi|290479329|gb|EFD87989.1| hypothetical protein AWRIB429_1384 [Oenococcus oeni AWRIB429]
          Length = 376

 Score =  355 bits (911), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 199/352 (56%), Positives = 270/352 (76%), Gaps = 15/352 (4%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+AAL +I++ +GKG+IM+LG    +   I+V+S+GSL LDIALG+GG+PKGRI+E
Sbjct: 5   RKAALDAALKKIEKDFGKGSIMRLGEN--VHTQIDVISTGSLKLDIALGVGGYPKGRIIE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           ++GPESSGKTT+ALH +A+ QK GGT A++DAE++LD+ YA+ LGV++ +LL+SQPDTGE
Sbjct: 63  VFGPESSGKTTVALHAVAEVQKQGGTAAYIDAENSLDAKYAQALGVNVDDLLLSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q LEI D LV SGA+D++VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL  +++
Sbjct: 123 QGLEIADDLVNSGAIDLLVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGTLN 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           R+  I +FINQ+R KIG+MFG+PETT GG ALKFYS+VRL++RR   IKD  +I GN T+
Sbjct: 183 RTGTIAIFINQIREKIGIMFGNPETTPGGRALKFYSTVRLEVRRSAQIKDGTNIVGNNTK 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           +KVVKNK+A PFK  E DIMYG+GIS  GELIDL V   I++KSGAW++++G+++GQGR 
Sbjct: 243 IKVVKNKVAPPFKVAEVDIMYGKGISQTGELIDLAVDKDIINKSGAWYAYQGEKIGQGRV 302

Query: 312 NSKIFLR--ENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           N+  +L   E+ +  + I + +R   G+             K D+D+D  DN
Sbjct: 303 NAISWLDSPEHKKEHDEIFTSVRDQYGI-----------GEKKDSDEDPGDN 343


>gi|56751174|ref|YP_171875.1| recombinase A [Synechococcus elongatus PCC 6301]
 gi|81299159|ref|YP_399367.1| recombinase A [Synechococcus elongatus PCC 7942]
 gi|76363345|sp|Q5N2W5|RECA_SYNP6 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123741845|sp|Q31RD9|RECA_SYNE7 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|56686133|dbj|BAD79355.1| recombination protein RecA [Synechococcus elongatus PCC 6301]
 gi|81168040|gb|ABB56380.1| RecA protein [Synechococcus elongatus PCC 7942]
          Length = 356

 Score =  355 bits (911), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 197/359 (54%), Positives = 257/359 (71%), Gaps = 3/359 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M  + +    +K KAL   LSQI+R +GKGAIM+LG    +   +E +S+G+L LD+ALG
Sbjct: 1   MASKSDAIAPEKEKALNLVLSQIERNFGKGAIMRLGDAARLR--VETISTGALTLDLALG 58

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG PKGRI+E+YGPESSGKTTL LH IA+ QK GG  AFVDAEHALD +YA  +GVD+ 
Sbjct: 59  -GGLPKGRIIEVYGPESSGKTTLTLHAIAEVQKQGGIAAFVDAEHALDPVYATSVGVDID 117

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NLLISQPDTGE ALEI D LVRS AVDI+VIDSVAAL PRAEIEG+MG++  G+QARLMS
Sbjct: 118 NLLISQPDTGEMALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEGEMGDAQVGLQARLMS 177

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RK+T +I +S C ++F+NQ+R KIGV +GSPETTTGG ALKFY+SVRLDIRR+ ++K
Sbjct: 178 QAMRKITGNIGKSGCTVIFLNQLRQKIGVTYGSPETTTGGQALKFYASVRLDIRRIQTLK 237

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
                 G + +VKVVKNK+A PF+  EFDI++G+GIS  G L+DL  +  ++ + GAW+S
Sbjct: 238 KGTEEYGTRAKVKVVKNKVAPPFRIAEFDILFGKGISTLGCLVDLAEETGVILRKGAWYS 297

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           + G  +GQGR+N+   L E+ +    +E  +R+   L A              A+  D+
Sbjct: 298 YNGDNIGQGRDNTITHLEEHPDFRATVEQQVREKLALGAQVSANTVGAAPAKTAEDTDS 356


>gi|296837369|gb|ADH59543.1| DNA recombinase [Burkholderia contaminans]
          Length = 309

 Score =  355 bits (911), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 219/310 (70%), Positives = 270/310 (87%), Gaps = 1/310 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI
Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  
Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  I
Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299

Query: 328 ESLLRQNAGL 337
           E+ +R++ G+
Sbjct: 300 ENRIRESLGV 309


>gi|47571284|gb|AAT35799.1| RecA [Mycobacterium nonchromogenicum]
          Length = 307

 Score =  355 bits (911), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 196/305 (64%), Positives = 250/305 (81%), Gaps = 2/305 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 5   PDREKALELAMAQIDKNFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YARKLGVD  +LL+SQPDT
Sbjct: 63  VEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYARKLGVDTDSLLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D L+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 123 GEQALEIADTLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+
Sbjct: 183 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG GIS  G LID+GV    + KSG+WF++ G++LGQG
Sbjct: 243 TRVKVVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGSWFTYDGEQLGQG 302

Query: 310 RENSK 314
           +EN++
Sbjct: 303 KENAR 307


>gi|283853919|ref|ZP_06371129.1| recA protein [Desulfovibrio sp. FW1012B]
 gi|283570696|gb|EFC18746.1| recA protein [Desulfovibrio sp. FW1012B]
          Length = 360

 Score =  355 bits (911), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 208/360 (57%), Positives = 274/360 (76%), Gaps = 4/360 (1%)

Query: 1   MDYRKEMNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIAL 59
           M  +   +  + +++AL  AL+ I+R +G+GA+M+L     +   I  + +GS+GLD+AL
Sbjct: 1   MARKPAQSPEEFRNEALATALTTIERKHGQGAVMRLEDSAHV--KIPSIPTGSIGLDLAL 58

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           GIGG PKGR+ EIYGPESSGKTTLALH IA+SQK GGT AF+DAEHALD  YA++LGV  
Sbjct: 59  GIGGIPKGRMTEIYGPESSGKTTLALHIIAESQKLGGTAAFIDAEHALDVNYAKRLGVKT 118

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
             LLISQPD GEQAL+I D+LVRSGAVD++VIDSVAAL P+AE+EG+MGE+  G QARLM
Sbjct: 119 TELLISQPDYGEQALDIADLLVRSGAVDVVVIDSVAALIPQAELEGEMGETQVGGQARLM 178

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           S A+RKLT +I +S   ++FINQ+RMKI    +GSPETTTGGNALKFY+SVRLDIRR+ +
Sbjct: 179 SHAMRKLTGTIHKSHTAVIFINQIRMKIGMTGYGSPETTTGGNALKFYASVRLDIRRIQT 238

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           +KDK+   G++ RVKVVKNK+A PF++  FDI+YG G+S  GELID+GV+A IVDKSGAW
Sbjct: 239 LKDKEETYGSRCRVKVVKNKVAPPFREALFDILYGTGVSREGELIDMGVEAGIVDKSGAW 298

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           F+F  +RLGQGR+N + FL+E+ +I + IE  LR++ G    +    P +  + + + DD
Sbjct: 299 FAFGSERLGQGRDNVRSFLQEHTDIRDQIEGKLREHLGFAEYTPPPAPEVEGEAEQEADD 358


>gi|329120469|ref|ZP_08249134.1| recombination protein A [Neisseria bacilliformis ATCC BAA-1200]
 gi|327461927|gb|EGF08257.1| recombination protein A [Neisseria bacilliformis ATCC BAA-1200]
          Length = 360

 Score =  355 bits (911), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 214/358 (59%), Positives = 278/358 (77%), Gaps = 4/358 (1%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
              K     DK KAL AAL+QI++ +GKG++M++    S  E ++V+S+GS+GLD+ALG+
Sbjct: 6   SKDKSSKPEDKGKALAAALAQIEKQFGKGSVMKM-DGSSETEDLQVISTGSIGLDLALGV 64

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GRIVEI+GPESSGKTTL L TIAQ QK GG CAF+DAE+A D +YAR LGV ++ 
Sbjct: 65  GGLPRGRIVEIFGPESSGKTTLCLETIAQCQKGGGVCAFIDAENAFDPVYARALGVKVEE 124

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI DMLVRSG VD++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQ
Sbjct: 125 LLVSQPDTGEQALEICDMLVRSGGVDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQ 184

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT  I ++  ++VFINQ+RMKIGVMFG+PETTTGGNALKFYSSVR+DIR    IK 
Sbjct: 185 ALRKLTGHIKKTNTLVVFINQLRMKIGVMFGNPETTTGGNALKFYSSVRIDIRGTQQIKK 244

Query: 242 KDS-ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
            D    G +T+VKV+KNK+A PF+  EFDI+YGEGIS+ GELI++GVK  I++KSGAW+S
Sbjct: 245 GDESPIGKETKVKVIKNKVAPPFRTAEFDILYGEGISWEGELIEIGVKLKIIEKSGAWYS 304

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           + G ++GQG++N +I+L+EN E+A  I+  +R  AG   D  + E   +  D  + ++
Sbjct: 305 YNGAKIGQGKDNVRIWLKENPEVAAEIDKKIRAEAG--TDLKITEGTRDETDGEEPEE 360


>gi|281423324|ref|ZP_06254237.1| protein RecA [Prevotella oris F0302]
 gi|281402660|gb|EFB33491.1| protein RecA [Prevotella oris F0302]
          Length = 339

 Score =  355 bits (911), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 209/322 (64%), Positives = 268/322 (83%), Gaps = 2/322 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL+AA+S+I++ +GKG+IM++G +    E +E + +GS+GLD+ALG+GG+P+GRI
Sbjct: 11  SEKLKALQAAMSKIEKDFGKGSIMRMGDEQ--IENVETIPTGSIGLDVALGVGGYPRGRI 68

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD 
Sbjct: 69  IEIYGPESSGKTTLAIHAIAEAQKKGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDN 128

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQAL+I D L+RS AVDI+V+DSVAALTP+ EIEGDMG+++ G+QARLMSQALRKLTS+
Sbjct: 129 GEQALQIADELIRSSAVDILVVDSVAALTPKKEIEGDMGDNVVGLQARLMSQALRKLTST 188

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS++    +FINQ+R KIGVMFGSPETTTGGNALKFYSSVRLDIRRV S+KD D+I GNQ
Sbjct: 189 ISKTNTCCIFINQLREKIGVMFGSPETTTGGNALKFYSSVRLDIRRVTSLKDGDNIIGNQ 248

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            RVKVVKNK+A PF++ EF+IM+GEGIS  GE++DLGV+  I+ KSG+WFS+   +L QG
Sbjct: 249 VRVKVVKNKVAPPFRKAEFEIMFGEGISKVGEILDLGVEYGIIQKSGSWFSYNSSKLAQG 308

Query: 310 RENSKIFLRENIEIAENIESLL 331
           R+ +K  LR+N E+ E +E L+
Sbjct: 309 RDATKALLRDNPELCEELEGLI 330


>gi|311748339|ref|ZP_07722124.1| protein RecA [Algoriphagus sp. PR1]
 gi|126576848|gb|EAZ81096.1| protein RecA [Algoriphagus sp. PR1]
          Length = 339

 Score =  355 bits (911), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 208/339 (61%), Positives = 267/339 (78%), Gaps = 3/339 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  +K KAL+  + ++++ YGKG +M+L     +   I  +S+GSLGLD+ALG+GG P+G
Sbjct: 3   NNAEKLKALQLTIDKLEKTYGKGTVMKLSDNKVL--DIPAISTGSLGLDMALGVGGIPRG 60

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R++EIYGPESSGKTTL +H IA++QK GG  AFVDAEHA D  YA KLG+D +NLLISQP
Sbjct: 61  RVIEIYGPESSGKTTLTMHCIAEAQKAGGLAAFVDAEHAFDKTYAEKLGIDTENLLISQP 120

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI + L+RSGA+DIIVIDSVAAL P+ E+EGDMG+S  G+QARLMSQALRKLT
Sbjct: 121 DNGEQALEIAEHLIRSGAIDIIVIDSVAALVPKGELEGDMGDSKMGLQARLMSQALRKLT 180

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT- 246
            +I+++ C  +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR+G IK+      
Sbjct: 181 GAINKTGCSCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGQIKESADSIL 240

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFK VEFDIMYG+GIS  GE+IDLGV+  IV K+G+WFS+ G++L
Sbjct: 241 GNRTRVKVVKNKVAPPFKVVEFDIMYGQGISKVGEIIDLGVEFDIVKKAGSWFSYNGEKL 300

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           GQGR+  K  L +N E+ E +E  ++  +GL A +  ++
Sbjct: 301 GQGRDAVKNLLLDNPELMEELEVKIKAASGLNAPAETEK 339


>gi|257095836|ref|YP_003169477.1| recA protein [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257048360|gb|ACV37548.1| recA protein [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 338

 Score =  355 bits (911), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 209/322 (64%), Positives = 273/322 (84%), Gaps = 1/322 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++G  GS+   I VVS+GSLGLDIALGIGG P+GR+VEIYGPESSGKT
Sbjct: 15  QIEKQFGKGSIMKMGE-GSVATDIPVVSTGSLGLDIALGIGGLPRGRVVEIYGPESSGKT 73

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGT AF+DAEHALD  YA+KLGV+L+ LLISQPDTGEQALEI DMLV
Sbjct: 74  TLTLQVIAEMQKLGGTAAFIDAEHALDPGYAQKLGVNLEELLISQPDTGEQALEIADMLV 133

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RS +VD++VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT++I+R+  +++FIN
Sbjct: 134 RSASVDVVVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTANINRTNTLVIFIN 193

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A 
Sbjct: 194 QIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGDEVIGNETRVKVVKNKVAP 253

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PF++  FDI+YGEG S  GE+++LGV+  ++DKSG+W+++ G ++GQG++N++ +L+   
Sbjct: 254 PFREAIFDILYGEGTSREGEIVELGVQHKLIDKSGSWYAYNGDKIGQGKDNAREYLKSKP 313

Query: 322 EIAENIESLLRQNAGLVADSLL 343
           ++A+ IE+ +R    + + S +
Sbjct: 314 QLAQEIEARIRAAVNVASASPV 335


>gi|307261625|ref|ZP_07543293.1| hypothetical protein appser12_11860 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306868748|gb|EFN00557.1| hypothetical protein appser12_11860 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 376

 Score =  355 bits (911), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 222/359 (61%), Positives = 284/359 (79%), Gaps = 6/359 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K+++   K KAL AAL+QI++ +GKG+IM+LG   ++   IE VS+GS+GLD ALGIGG 
Sbjct: 15  KQIDPEQKEKALAAALAQIEKQFGKGSIMRLGDTQAL--DIEAVSTGSIGLDAALGIGGL 72

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P GRIVEIYGPESSGKTTL L  IAQ+QK+G TCAF+DAE+ALD +YARKLGVD   LLI
Sbjct: 73  PMGRIVEIYGPESSGKTTLTLSVIAQAQKSGKTCAFIDAENALDPVYARKLGVDTDALLI 132

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALR
Sbjct: 133 SQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALR 192

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT++I  + C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G +KD D 
Sbjct: 193 KLTANIKATNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRSGVVKDGDE 252

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + G++T+VK+VKNK+A PF++V+FDIMYGEGIS   EL+ L      + K+GAWFS++G 
Sbjct: 253 VVGSETKVKIVKNKVAPPFREVQFDIMYGEGISRMNELLILAEANGFIQKAGAWFSYEGT 312

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           ++GQG+ N+  +L+EN EIAE IE  +R+       S  ++ +   ++  D DD ++ E
Sbjct: 313 KIGQGKNNAIKWLKENPEIAEKIEQDIREQL----ISTPEKTSAGEQNVLDADDVNDFE 367


>gi|239908963|ref|YP_002955705.1| RecA protein [Desulfovibrio magneticus RS-1]
 gi|259563333|sp|C4XQT5|RECA_DESMR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|239798830|dbj|BAH77819.1| RecA protein [Desulfovibrio magneticus RS-1]
          Length = 355

 Score =  355 bits (911), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 209/355 (58%), Positives = 274/355 (77%), Gaps = 4/355 (1%)

Query: 1   MDYRKEMNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIAL 59
           M  +  ++  + +S+AL  AL+ I+R +G+GA+M+L     +   I  + +GS+GLD+AL
Sbjct: 1   MAKKPALSPQEFRSEALATALTTIERKHGQGAVMRLEDSAHV--KIPAIPTGSIGLDLAL 58

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           GIGG PKGRI EIYGPESSGKTTLALH IA+SQK GGT AF+DAEHALD  YAR+LGV+ 
Sbjct: 59  GIGGIPKGRITEIYGPESSGKTTLALHIIAESQKLGGTAAFIDAEHALDVNYARRLGVNT 118

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
             +LISQPD GEQAL+I D+LVRSGAVD++VIDSVAAL P+AE+EG+MGE+  G QARLM
Sbjct: 119 PEMLISQPDFGEQALDIADLLVRSGAVDVVVIDSVAALIPQAELEGEMGETQVGGQARLM 178

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           S A+RKLT +I +S+  ++FINQ+RMKI    +GSPETTTGGNALKFY+SVRLDIRR+ +
Sbjct: 179 SHAMRKLTGTIHKSQTSVIFINQIRMKIGMTGYGSPETTTGGNALKFYASVRLDIRRIQT 238

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           +KDK+   G++ RVKVVKNK+A PF++  FDI+YG G+S  GELID+GV+A IVDKSGAW
Sbjct: 239 LKDKEETYGSRCRVKVVKNKVAPPFREALFDILYGTGVSREGELIDMGVEAGIVDKSGAW 298

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           F+F  +RLGQGR+N + FL+E+ +I + IE  LR++ G         P +  ++D
Sbjct: 299 FAFGSERLGQGRDNVRAFLQEHTDIRDQIEGKLREHLGFAEYVPPPSPEVMEEED 353


>gi|119476685|ref|ZP_01616995.1| recombinase A [marine gamma proteobacterium HTCC2143]
 gi|119449941|gb|EAW31177.1| recombinase A [marine gamma proteobacterium HTCC2143]
          Length = 352

 Score =  355 bits (911), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 217/326 (66%), Positives = 273/326 (83%), Gaps = 2/326 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL+AAL+QI+R +GKG+IM++G +    E I  +S+GSLGLD+ALGIGG PKGRI
Sbjct: 5   TNKEKALQAALAQIERQFGKGSIMKMGEEAR--EAIPAISTGSLGLDVALGIGGLPKGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTL L  IA++QK G TCAF+DAEHALD  YA KLGV++ ++L+SQPDT
Sbjct: 63  VEIYGPESSGKTTLTLSVIAEAQKAGATCAFIDAEHALDPGYAEKLGVNIDDMLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITDMLVRSG+VD+IV+DSVAALTP+AEIEGD+G+S  G+ AR+MSQA+RK+T +
Sbjct: 123 GEQALEITDMLVRSGSVDVIVVDSVAALTPKAEIEGDIGDSHMGLAARMMSQAMRKMTGN 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I  + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++KD D I GN+
Sbjct: 183 IKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKDGDEIVGNE 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQ EF I+YG+GI   GE+IDLGVK  +VDK+GAW+++ G ++GQG
Sbjct: 243 TRVKVVKNKVAPPFKQAEFQILYGKGIYRMGEVIDLGVKQGLVDKAGAWYAYNGNKIGQG 302

Query: 310 RENSKIFLRENIEIAENIESLLRQNA 335
           + N+  FL +N +IA  IE  +RQ  
Sbjct: 303 KANAAKFLLDNPDIASVIEGKIRQEL 328


>gi|121596285|ref|YP_988181.1| recombination protein RecA [Acidovorax sp. JS42]
 gi|222112514|ref|YP_002554778.1| reca protein [Acidovorax ebreus TPSY]
 gi|120608365|gb|ABM44105.1| recA protein [Acidovorax sp. JS42]
 gi|221731958|gb|ACM34778.1| recA protein [Acidovorax ebreus TPSY]
          Length = 373

 Score =  355 bits (911), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 222/345 (64%), Positives = 278/345 (80%), Gaps = 11/345 (3%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR++EIYGPESSGKTT
Sbjct: 27  IEKQFGKGTIMRLGE-GEAIEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTT 85

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GG CAFVDAEHALD  YA KLGV L +LLISQPDTGEQALEI D LVR
Sbjct: 86  LTLQVIAEMQKQGGQCAFVDAEHALDVQYASKLGVQLTDLLISQPDTGEQALEIVDSLVR 145

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AEIEG+MG++LPG+QARLMSQALRKLT++I ++ C+++FINQ
Sbjct: 146 SGAVDLIVVDSVAALTPKAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQ 205

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK  D   GN+T+VKVVKNK++ P
Sbjct: 206 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPP 265

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FK  EFDI++GEGIS  GE+ID+GV A I++KSGAW+++ G+++GQGR+N++ FLREN  
Sbjct: 266 FKTAEFDILFGEGISREGEIIDMGVNARILEKSGAWYAYNGEKIGQGRDNAREFLRENPG 325

Query: 323 IAENIESLLRQNAGL----------VADSLLQEPAINTKDDADKD 357
           +A  IE+ +R++ G+           AD    +PA   K D   +
Sbjct: 326 LAVEIENKVRESLGIALLPTGHASPAADLPEDKPARGKKADKTGE 370


>gi|303229424|ref|ZP_07316214.1| RecA protein [Veillonella atypica ACS-134-V-Col7a]
 gi|303230767|ref|ZP_07317514.1| RecA protein [Veillonella atypica ACS-049-V-Sch6]
 gi|302514527|gb|EFL56522.1| RecA protein [Veillonella atypica ACS-049-V-Sch6]
 gi|302515960|gb|EFL57912.1| RecA protein [Veillonella atypica ACS-134-V-Col7a]
          Length = 347

 Score =  355 bits (911), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 201/347 (57%), Positives = 270/347 (77%), Gaps = 1/347 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M +  +  AL+ AL QI++ +GKGAIM+LG        +EV+SSGSL +D+A+G+GGFP+
Sbjct: 1   MAVDGRQAALDNALKQIEKDFGKGAIMRLGEAADRMN-VEVISSGSLAIDLAVGVGGFPR 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++EIYGPESSGKTT+ALH +A++QK GG  AF+DAEHA+D IYAR LGVD+ NLLISQ
Sbjct: 60  GRVIEIYGPESSGKTTVALHAVAEAQKQGGVAAFIDAEHAMDPIYARNLGVDINNLLISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT+ LVRSGAVDI+V+DSVAAL P+AEIEG+MG++  G+ ARLMS+ALRKL
Sbjct: 120 PDNGEQALEITEALVRSGAVDIVVVDSVAALVPKAEIEGEMGDAHVGLHARLMSKALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T +I+++K +++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+R+   IK  +   
Sbjct: 180 TGTINKTKTVVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRKGELIKANNENV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T+VKVVKNK+A PFK  EFD+MYG+GIS  G LID+G    I+ KSGAW+S+ G+R+
Sbjct: 240 GARTKVKVVKNKVAPPFKTAEFDLMYGQGISREGTLIDIGTNMEIIKKSGAWYSYNGERM 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           GQG+E +K +L +N ++AE I+ ++R       ++        T ++
Sbjct: 300 GQGKEAAKQYLFDNPQVAEEIDRIIRDTLAAEPETFDVVGEDATPEE 346


>gi|169831007|ref|YP_001716989.1| recA protein [Candidatus Desulforudis audaxviator MP104C]
 gi|169637851|gb|ACA59357.1| recA protein [Candidatus Desulforudis audaxviator MP104C]
          Length = 345

 Score =  355 bits (911), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 200/344 (58%), Positives = 270/344 (78%), Gaps = 1/344 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           ++D+ KALE AL+QI+R +GKGA+M+LG        +EV+ +G+L LD+ALG+GG P+GR
Sbjct: 1   MIDRQKALELALAQIERQFGKGAVMKLGEATGKL-SVEVIPTGALALDLALGVGGMPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EI+GPE+SGKTT+ALH IA++Q+ GGT AF+DAEHALD +YA K+GVD++NLLISQPD
Sbjct: 60  VIEIFGPEASGKTTVALHVIAEAQRMGGTAAFIDAEHALDPVYAGKVGVDIENLLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEIT+ LVRSGAVD++VIDSVAAL PRAE+EG+MG+   G+QARLMSQALRKLT+
Sbjct: 120 TGEQALEITEALVRSGAVDVVVIDSVAALVPRAELEGEMGDIHVGLQARLMSQALRKLTA 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            I +S+ + +FINQ+R K+GVMFG+PETT GG ALKFYSS+RL++RR+ ++K      G 
Sbjct: 180 VIGKSRTVAIFINQIREKVGVMFGNPETTPGGRALKFYSSIRLEVRRLEALKQGAETVGA 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + RVKVVKNK+A PFKQ EFD++YGEGIS  G L+D+     +V KSGAW+S+  +RLGQ
Sbjct: 240 RVRVKVVKNKVAPPFKQAEFDLLYGEGISLLGSLLDVATDLRVVTKSGAWYSYGQERLGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GREN++ FL+E+ E+ + I   +++  G     L      + K+
Sbjct: 300 GRENAREFLKEHPELVDKISQQVKEILGTPGLKLETAVTGDEKE 343


>gi|229269521|ref|YP_330622.2| recombinase A [Streptococcus agalactiae A909]
          Length = 365

 Score =  355 bits (911), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 198/351 (56%), Positives = 267/351 (76%), Gaps = 7/351 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRIV
Sbjct: 4   ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 62  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 122 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+R    IK     KD   
Sbjct: 182 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRGNTQIKGTGEHKDHNV 241

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PF++   +IMYGEGIS  GELI +     I+ K+GAW+S+ G+++
Sbjct: 242 GKETKIKVVKNKVAPPFREAFVEIMYGEGISRTGELIKIASDLDIIQKAGAWYSYNGEKI 301

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA-DSLLQEPAINTKDDADK 356
           GQG EN+K +L +N  I + I+  +R + G+   DS +Q   +  K++AD 
Sbjct: 302 GQGSENAKKYLADNPAIFDEIDHKVRVHFGMTEDDSPVQSELVEEKNEADD 352


>gi|168334460|ref|ZP_02692631.1| RecA protein (recombinase A) [Epulopiscium sp. 'N.t. morphotype B']
          Length = 367

 Score =  355 bits (911), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 195/327 (59%), Positives = 256/327 (78%), Gaps = 2/327 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D  KA+E A+S+I++ +GKG+IM+LG   SI   I+  S+G++ LDIALG GG P GR
Sbjct: 2   NTDALKAVEEAVSKIEKKFGKGSIMKLGD--SINTKIKTFSTGAISLDIALGAGGIPIGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVE++GPESSGKTTL LH IA+ QK+GG  AF+DAEHALD  YA++LGV++ +L +SQPD
Sbjct: 60  IVEVFGPESSGKTTLTLHMIAEVQKSGGIAAFIDAEHALDPEYAQRLGVNISDLYVSQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GEQALEI + +V S A++++VIDSVAAL PRAEI+G+MG+S  G+QARLMSQALRKLT 
Sbjct: 120 NGEQALEIAETMVHSQAINLVVIDSVAALVPRAEIDGNMGDSHVGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            +++S C ++FINQ+R K+GV+FG+PETT GG ALKFYSSVRLDIR+  +IK+   I G+
Sbjct: 180 LVNKSNCTVIFINQLREKVGVIFGNPETTPGGRALKFYSSVRLDIRKAETIKNATEIIGS 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFKQ EFDI+YGEGIS  G+++D  V   IV K GAW+S+ G ++GQ
Sbjct: 240 KTRVKVVKNKIAPPFKQAEFDIIYGEGISSIGDILDTAVNIDIVAKGGAWYSYNGTKIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNA 335
           GREN+K FL+EN  I   I++ +R   
Sbjct: 300 GRENAKKFLQENQSILNEIDTAVRDYY 326


>gi|242373577|ref|ZP_04819151.1| recombination protein RecA [Staphylococcus epidermidis M23864:W1]
 gi|242348940|gb|EES40542.1| recombination protein RecA [Staphylococcus epidermidis M23864:W1]
          Length = 369

 Score =  355 bits (910), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 197/349 (56%), Positives = 259/349 (74%), Gaps = 2/349 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+  +  +++ +GKGA+M+LG               S+ +D ALG+GG+PKGRI+
Sbjct: 23  ERQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSTSSG--SVTVDNALGVGGYPKGRII 80

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD +YA+ LGVD+ NL +SQPD G
Sbjct: 81  EIYGPESSGKTTVALHAIAEVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHG 140

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI +  VRSGAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 141 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 200

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S    +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T
Sbjct: 201 SKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRT 260

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G+R+GQG+
Sbjct: 261 KIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGK 320

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           EN K +L+EN +I E I+  LR+  G+    + +  +         D+ 
Sbjct: 321 ENVKNYLKENPQIKEEIDRKLREKLGIFDGDVEETESEEDTPKTLFDEE 369


>gi|284039880|ref|YP_003389810.1| recA protein [Spirosoma linguale DSM 74]
 gi|283819173|gb|ADB41011.1| recA protein [Spirosoma linguale DSM 74]
          Length = 364

 Score =  355 bits (910), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 211/350 (60%), Positives = 266/350 (76%), Gaps = 3/350 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+  + ++ + +GKG +M+L     +   I V+S+GSLGLD+ALGIGG P+GR+VE
Sbjct: 17  KLKALQTTIEKLDKAFGKGTVMRLSESKVV--DIPVISTGSLGLDLALGIGGMPRGRVVE 74

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL +H IA++QK GG  AF+DAEHA D +YA KLG+D KNLLISQPD GE
Sbjct: 75  IYGPESSGKTTLTMHCIAEAQKAGGLAAFIDAEHAFDRVYAEKLGIDTKNLLISQPDNGE 134

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI + L+ SGA+DIIVIDSVAAL P+AEIEG+MGES  G+QARLMSQALRKLT +I+
Sbjct: 135 QALEIAEHLISSGAIDIIVIDSVAALVPKAEIEGEMGESKMGLQARLMSQALRKLTGTIN 194

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-ITGNQT 250
           ++ C  +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR+G IK+    + GN+T
Sbjct: 195 KTGCCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGQIKEGADNVVGNRT 254

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A+PFK VEFDIMYG+GIS  GE++DL V+  +V KSG+WFS+   RL QGR
Sbjct: 255 KVKVVKNKLAAPFKVVEFDIMYGQGISKVGEILDLAVEMEVVKKSGSWFSYGTSRLAQGR 314

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           +  K  L +N E+   IE  +R       D+LL      T DD + +  D
Sbjct: 315 DAVKELLLDNPELMGEIEGKIRAKIADDQDALLDPVLAATADDDEGEIDD 364


>gi|318042569|ref|ZP_07974525.1| recombinase A [Synechococcus sp. CB0101]
          Length = 375

 Score =  355 bits (910), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 195/336 (58%), Positives = 253/336 (75%), Gaps = 3/336 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             ++ KAL   L+QI+R +GKG+IM+LG    +   IE   +G+L LD+ALG GG+PKGR
Sbjct: 18  NPERDKALGLVLNQIERNFGKGSIMRLGDASRMR--IETSPTGALTLDLALG-GGYPKGR 74

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL LH IA+ Q+ GG  AFVDAEHALD +YA  LGVD++NLL+SQPD
Sbjct: 75  VVEIYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAAALGVDIENLLVSQPD 134

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGE ALEI D LVRS AVDI+V+DSVAALTPRAEIEG+MG+   G QARLMSQA+RK+T 
Sbjct: 135 TGEMALEIVDQLVRSAAVDIVVVDSVAALTPRAEIEGEMGDLAVGSQARLMSQAMRKITG 194

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I +S C ++F+NQ+R KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K      G 
Sbjct: 195 NIGKSGCTVIFLNQLRQKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGI 254

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + +VKV KNK+A PF+  EFDI++G GIS  G L+DL  +  +V + GAW+S++G  +GQ
Sbjct: 255 RAKVKVAKNKVAPPFRIAEFDILFGRGISTVGCLLDLAEENGVVVRKGAWYSYEGDNIGQ 314

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
           GR+N+  +L +N E  E IE  +R+     +DSL  
Sbjct: 315 GRDNTITWLEQNPEPKEQIERQVREKLSETSDSLKP 350


>gi|302392234|ref|YP_003828054.1| RecA protein [Acetohalobium arabaticum DSM 5501]
 gi|302204311|gb|ADL12989.1| RecA protein [Acetohalobium arabaticum DSM 5501]
          Length = 349

 Score =  355 bits (910), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 198/332 (59%), Positives = 256/332 (77%), Gaps = 3/332 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL+  L QI++ +GKG+IM+LG   ++   +E + +G+L LD+ALG+GG P+GRIV
Sbjct: 4   EKEEALKRTLKQIEKEHGKGSIMRLGEANTL--DVEAIPTGALSLDVALGVGGIPRGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E++GPE+SGKTT+ALH IA++QK  G  AF+DAEHALD  YA+ LGVD+  LLISQP+TG
Sbjct: 62  EVFGPEASGKTTVALHMIAETQKMDGVAAFIDAEHALDPKYAKNLGVDIDELLISQPNTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ALEI + LVRSGA+DI+V+DSVAAL P AEIEG+MG+S  G+QARLMSQA+RKL+ +I
Sbjct: 122 EEALEICESLVRSGAIDIVVVDSVAALVPEAEIEGEMGDSHVGLQARLMSQAMRKLSGTI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+SK   +FINQ+R K+GV FG+PETT GG ALKFYSSVRLDIRR  +IKD D   GN+T
Sbjct: 182 SKSKTTCIFINQIREKVGVRFGNPETTPGGRALKFYSSVRLDIRRRKAIKDGDEFLGNKT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ-RLGQG 309
           RVKVVKNK+A PFK  EFDIMYG GIS  G ++D+ V   IV++SGAW+S+     LGQG
Sbjct: 242 RVKVVKNKVAPPFKTAEFDIMYGTGISKTGCILDMAVDHDIVERSGAWYSYGDDVTLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           R NSK  L EN E+   IE  ++Q  G++   
Sbjct: 302 RANSKEALEENPELLAEIEKKVKQELGMIDQE 333


>gi|119896798|ref|YP_932011.1| recombinase A [Azoarcus sp. BH72]
 gi|166199597|sp|A1K2R9|RECA_AZOSB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|119669211|emb|CAL93124.1| recombinase A [Azoarcus sp. BH72]
          Length = 344

 Score =  355 bits (910), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 210/317 (66%), Positives = 269/317 (84%), Gaps = 1/317 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           SQI++ +GKG+IM++G  G++ + I+ VS+GSLGLDIALG+GG P+GR+VEIYGPESSGK
Sbjct: 14  SQIEKQFGKGSIMRMGD-GNVEKDIQTVSTGSLGLDIALGLGGLPRGRVVEIYGPESSGK 72

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEI DML
Sbjct: 73  TTLTLQVVAEMQKLGGTAAFIDAEHALDVGYAEKLGVNITDLLISQPDTGEQALEIADML 132

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSG VD++VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT++I R+  +++FI
Sbjct: 133 VRSGGVDVVVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTANIKRTNTLVIFI 192

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIRR G+IK  D + G++T+VKVVKNK++
Sbjct: 193 NQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRRTGTIKRGDEVVGSETKVKVVKNKVS 252

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
            PFK+  FDI+YGEG+S  GE+IDLGV   IVDKSGAW+++ G ++GQG++N++ FLR N
Sbjct: 253 PPFKEAHFDILYGEGVSREGEIIDLGVDHKIVDKSGAWYAYNGDKIGQGKDNAREFLRAN 312

Query: 321 IEIAENIESLLRQNAGL 337
             +A  IE+ +R   GL
Sbjct: 313 PALAREIENKVRVVLGL 329


>gi|31540557|gb|AAP49241.1| RecA [Mycobacterium peregrinum]
          Length = 308

 Score =  355 bits (910), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 196/305 (64%), Positives = 253/305 (82%), Gaps = 2/305 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 6   PDREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 64  VEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 124 GEQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+
Sbjct: 184 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI++G GIS  G LID+GV+   + KSG+WF+++G++LGQG
Sbjct: 244 TRVKVVKNKVSPPFKQAEFDILFGRGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQG 303

Query: 310 RENSK 314
           +EN++
Sbjct: 304 KENAR 308


>gi|282880395|ref|ZP_06289106.1| RecA protein [Prevotella timonensis CRIS 5C-B1]
 gi|281305751|gb|EFA97800.1| RecA protein [Prevotella timonensis CRIS 5C-B1]
          Length = 342

 Score =  355 bits (910), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 203/333 (60%), Positives = 268/333 (80%), Gaps = 2/333 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           + +       K KAL+AA+++I++ +GKG+IM++G +    E +EV+ +GS+ LD ALG+
Sbjct: 5   ETKSPATNEGKLKALQAAMAKIEKDFGKGSIMRMGDEQ--IEDVEVIPTGSIALDCALGV 62

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+P+GRI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ N
Sbjct: 63  GGYPRGRIIEIYGPESSGKTTLAIHAIAETQKAGGIAAFIDAEHAFDRFYAAKLGVDVDN 122

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L ISQPD GEQALEI D L+RS A+DI+VIDSVAALTP+ EI+GDMG+S  G+QARLMSQ
Sbjct: 123 LWISQPDNGEQALEIADQLIRSSAIDILVIDSVAALTPKKEIDGDMGDSNVGLQARLMSQ 182

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLTS+IS++    +FINQ+R KIGVMFGSPETTTGGNALKFY+SVRLDIR+V S+KD
Sbjct: 183 ALRKLTSNISKTNTTCIFINQLREKIGVMFGSPETTTGGNALKFYASVRLDIRKVTSLKD 242

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            D + GNQ RVKVVKNK+A PF++ EF+I +GEGIS  GE++DLGV+  I+ KSG+W+S+
Sbjct: 243 GDQVVGNQVRVKVVKNKVAPPFRKAEFEITFGEGISKIGEIVDLGVEYDIIKKSGSWYSY 302

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
           +  +L QGR+ +K  L++N E+ E +E+ ++Q 
Sbjct: 303 QDSKLAQGRDATKKLLKDNPELCEELEAQIKQA 335


>gi|227544214|ref|ZP_03974263.1| recombination protein A [Lactobacillus reuteri CF48-3A]
 gi|300908210|ref|ZP_07125676.1| recombination protein A [Lactobacillus reuteri SD2112]
 gi|227185807|gb|EEI65878.1| recombination protein A [Lactobacillus reuteri CF48-3A]
 gi|300894637|gb|EFK87993.1| recombination protein A [Lactobacillus reuteri SD2112]
          Length = 362

 Score =  355 bits (910), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 190/342 (55%), Positives = 265/342 (77%), Gaps = 4/342 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ A+ +I++ +GKG+IM++G    +   +  VSSGSL +D ALGIGG+P+GRIVE
Sbjct: 5   RKAALDVAIRKIEKNFGKGSIMRMGDATDM--KVASVSSGSLAIDKALGIGGYPRGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH +A+ Q+ GGT A++DAE+ALD  YA  LGV++ +LL+SQPD+GE
Sbjct: 63  IYGPESSGKTTVALHAVAEVQRQGGTAAYIDAENALDPQYAEALGVNIDDLLLSQPDSGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           + LEI D L+ SGAVD++++DSVAAL PRAEI+GDMG++  G+QARLMSQALRKL+  I+
Sbjct: 123 EGLEIADALISSGAVDLVIVDSVAALVPRAEIDGDMGDTHVGLQARLMSQALRKLSGEIN 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++K I +FINQ+R K+GVMFG+PETTTGG ALKFYS++R++IRR   IK+   + GN+ +
Sbjct: 183 KTKTIAIFINQIREKVGVMFGNPETTTGGRALKFYSTIRMEIRRAEQIKNGTDVIGNKAK 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNK+A PFK+ E DIMYGEGIS  GEL+D+ V+  +VDKSGAW+S+  +R+GQGRE
Sbjct: 243 VKIVKNKVAPPFKRCEVDIMYGEGISKTGELLDMAVENDLVDKSGAWYSYGNERIGQGRE 302

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           N+K +L+E+ +    +   +R   G+  + L ++    T DD
Sbjct: 303 NAKKWLKEHPDSMNELMDKVRVANGM--EPLNEKSTKETADD 342


>gi|109254800|emb|CAK22262.1| recombinase A [Pseudochrobactrum kiredjianiae]
          Length = 299

 Score =  355 bits (910), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 233/300 (77%), Positives = 275/300 (91%), Gaps = 1/300 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           +AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG PKGRIVEIYGPE
Sbjct: 1   DAALSQIERSFGKGSIMRLGQNDKVVE-IETVSTGSLSLDIALGVGGLPKGRIVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI
Sbjct: 60  SSGKTTMALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S  +
Sbjct: 120 TDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNTM 179

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IK++D + GNQTR+KVVK
Sbjct: 180 VIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKERDEVVGNQTRIKVVK 239

Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316
           NK+A PFKQVEFDIMYG+G+S  GEL+DLGVKA IV+KSG+WFS+  QRLGQGR+N+K F
Sbjct: 240 NKLAPPFKQVEFDIMYGQGVSKTGELVDLGVKAGIVEKSGSWFSYNSQRLGQGRDNAKNF 299


>gi|31540565|gb|AAP49245.1| RecA [Mycobacterium smegmatis]
          Length = 308

 Score =  355 bits (910), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 197/305 (64%), Positives = 254/305 (83%), Gaps = 2/305 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 6   PDREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 64  IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 124 GEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+
Sbjct: 184 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG
Sbjct: 244 TRVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQG 303

Query: 310 RENSK 314
           +EN++
Sbjct: 304 KENAR 308


>gi|319892304|ref|YP_004149179.1| RecA protein [Staphylococcus pseudintermedius HKU10-03]
 gi|317162000|gb|ADV05543.1| RecA protein [Staphylococcus pseudintermedius HKU10-03]
 gi|323464599|gb|ADX76752.1| protein RecA [Staphylococcus pseudintermedius ED99]
          Length = 347

 Score =  354 bits (909), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 197/327 (60%), Positives = 254/327 (77%), Gaps = 2/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+  +  +++ +GKGA+M+LG               S+ LD ALG+GG+PKGRI+
Sbjct: 4   ERQKALDTVIKNMEKSFGKGAVMKLGENKDRRVSSVSSG--SVTLDHALGVGGYPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD +YA  LGVD+ NL +SQPD G
Sbjct: 62  EVYGPESSGKTTVALHAIAEVQKNGGVAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI +  VRSGAVDII++DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+++I
Sbjct: 122 EQGLEIAEAFVRSGAVDIIIVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSAAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+SK   +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T
Sbjct: 182 SKSKTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G+R+GQG+
Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGKGISREGELIDLGVQYDIVDKSGAWYSYNGERMGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337
           EN K FL EN ++ + I+  LR+  G+
Sbjct: 302 ENVKQFLLENPKLEDEIDRKLREKLGI 328


>gi|296803024|gb|ADH51588.1| DNA recombinase [Burkholderia contaminans]
 gi|296803072|gb|ADH51612.1| DNA recombinase [Burkholderia contaminans]
          Length = 308

 Score =  354 bits (909), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 219/309 (70%), Positives = 269/309 (87%), Gaps = 1/309 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI
Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  
Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  I
Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299

Query: 328 ESLLRQNAG 336
           E+ +R++ G
Sbjct: 300 ENRIRESLG 308


>gi|281421885|ref|ZP_06252884.1| protein RecA [Prevotella copri DSM 18205]
 gi|281404127|gb|EFB34807.1| protein RecA [Prevotella copri DSM 18205]
          Length = 343

 Score =  354 bits (909), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 203/335 (60%), Positives = 263/335 (78%), Gaps = 2/335 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   K      K KAL+AA+++I++ +GKG+IM+LG +    E IEV+ +GS+ LD ALG
Sbjct: 5   MQEGKLNPNEGKLKALQAAMAKIEKDFGKGSIMKLGDE--HVENIEVIPTGSIALDNALG 62

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG+PKGRI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ 
Sbjct: 63  VGGYPKGRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVD 122

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL ISQPD GEQAL+I D L+ S AVDI+V+DSVAALTP+ EIEGDMG+++ G+QARLMS
Sbjct: 123 NLWISQPDNGEQALQIADQLISSAAVDIVVVDSVAALTPKKEIEGDMGDNVVGLQARLMS 182

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLTS+IS++    +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR+  +IK
Sbjct: 183 QALRKLTSTISKTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRKATAIK 242

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D D + GN  RVKVVKNK+A PF++ EFDIM+GEGIS  GE+  L V   I++KSG+W+S
Sbjct: 243 DGDEVIGNLVRVKVVKNKVAPPFRKAEFDIMFGEGISRAGEVFGLAVANDIIEKSGSWYS 302

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
           + G +LGQG +  K  L++N E+ + +E+ +R+  
Sbjct: 303 YGGSKLGQGADACKALLKDNPELLDELEAKVREAL 337


>gi|239636972|ref|ZP_04677966.1| protein RecA [Staphylococcus warneri L37603]
 gi|239597322|gb|EEQ79825.1| protein RecA [Staphylococcus warneri L37603]
          Length = 348

 Score =  354 bits (909), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 198/347 (57%), Positives = 262/347 (75%), Gaps = 2/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+  +  +++ +GKGA+M+LG               S+ LD ALG+GG+PKGRI+
Sbjct: 4   ERQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSTSSG--SVTLDNALGVGGYPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA++QK GG  AF+DAEHALD +YA+ LGVD+ NL +SQPD G
Sbjct: 62  EIYGPESSGKTTVALHAIAETQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI +  VRSGAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 122 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S    +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T
Sbjct: 182 SKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G+R+GQG+
Sbjct: 242 KIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENEIVDKSGAWYSYNGERMGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           EN K +L+EN +I + I+  LR+  G+    + ++     K   D++
Sbjct: 302 ENVKTYLKENPQIKDEIDQKLREKLGIFDGDVEEKEEDAPKSLFDEE 348


>gi|32490984|ref|NP_871238.1| recombinase A [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
 gi|30316210|sp|Q8D2W7|RECA_WIGBR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|25166190|dbj|BAC24381.1| recA [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 331

 Score =  354 bits (909), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 197/323 (60%), Positives = 256/323 (79%), Gaps = 2/323 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALE AL +I++ +GKG+IM LG   S+   IE +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKKKALEKALDKIEKQFGKGSIMTLGENRSM--DIETISTGSLSLDIALGTGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  I ++QK G  CAF+DAEHALD IYA+ LGVD+ NLL SQPD G
Sbjct: 64  EIYGPESSGKTTLTLEVIYEAQKKGKICAFIDAEHALDPIYAKNLGVDINNLLCSQPDNG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEI+G++G+   G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDSLTRSGAVDLIIVDSVAALTPKAEIDGEIGDLHLGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+R+KIG +FGSPE TTGGNALKFY+SVRLDIR++G+IKD D I GN+T
Sbjct: 184 KNANTLLIFINQIRVKIGTIFGSPEVTTGGNALKFYASVRLDIRKIGTIKDGDIIIGNET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+++PF+Q EF I+YG GI+  GELI LGV  +I++KSG+W+S+   ++GQG+
Sbjct: 244 RVKVVKNKISAPFRQAEFQILYGNGINTEGELITLGVNHNIIEKSGSWYSYNKNKIGQGK 303

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
            N+  FL+ N  I++ I   +R+
Sbjct: 304 NNACNFLKNNPNISKEISRKIRE 326


>gi|116491365|ref|YP_810909.1| RecA protein [Oenococcus oeni PSU-1]
 gi|122276453|sp|Q04E78|RECA_OENOB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|116092090|gb|ABJ57244.1| RecA protein [Oenococcus oeni PSU-1]
          Length = 376

 Score =  354 bits (909), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 198/352 (56%), Positives = 269/352 (76%), Gaps = 15/352 (4%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+AAL +I++ +GKG+IM+LG    +   ++V+S+GSL LDIALG+GG+PKGRI+E
Sbjct: 5   RKAALDAALKKIEKDFGKGSIMRLGEN--VHTQVDVISTGSLKLDIALGVGGYPKGRIIE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           ++GPESSGKTT+ALH  A+ QK GGT A++DAE++LD+ YA+ LGV++ +LL+SQPDTGE
Sbjct: 63  VFGPESSGKTTVALHAAAEVQKQGGTAAYIDAENSLDAKYAQALGVNVDDLLLSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q LEI D LV SGA+D++VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL  +++
Sbjct: 123 QGLEIADDLVNSGAIDLLVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGTLN 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           R+  I +FINQ+R KIG+MFG+PETT GG ALKFYS+VRL++RR   IKD  +I GN T+
Sbjct: 183 RTGTIAIFINQIREKIGIMFGNPETTPGGRALKFYSTVRLEVRRSAQIKDGTNIVGNNTK 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           +KVVKNK+A PFK  E DIMYG+GIS  GELIDL V   I++KSGAW++++G+++GQGR 
Sbjct: 243 IKVVKNKVAPPFKVAEVDIMYGKGISQTGELIDLAVDKDIINKSGAWYAYQGEKIGQGRV 302

Query: 312 NSKIFLR--ENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           N+  +L   E+ +  + I + +R   G+             K D+D+D  DN
Sbjct: 303 NAISWLDSPEHKKEHDEIFTSVRDQYGI-----------GEKKDSDEDPGDN 343


>gi|223039980|ref|ZP_03610262.1| protein RecA [Campylobacter rectus RM3267]
 gi|222878700|gb|EEF13799.1| protein RecA [Campylobacter rectus RM3267]
          Length = 345

 Score =  354 bits (909), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 215/347 (61%), Positives = 270/347 (77%), Gaps = 5/347 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            DK KAL+ AL QI +V+GKG+I++LG      E I+ VS+GSLGLD+ALG+GG PKGRI
Sbjct: 3   ADKKKALDLALKQIDKVFGKGSIVRLGDVE--IEPIDAVSTGSLGLDLALGVGGIPKGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTL LH IA+ QK GGTCAFVDAEHALD  YA  LGVD  NL +SQPD 
Sbjct: 61  IEIYGPESSGKTTLTLHIIAECQKAGGTCAFVDAEHALDVKYASNLGVDTDNLYVSQPDF 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + L RSGA+D+IV+DSVAALTP++EIEGDMG+   G+QARLMSQALRKL   
Sbjct: 121 GEQALEIVENLARSGAIDLIVVDSVAALTPKSEIEGDMGDQHVGLQARLMSQALRKLAGV 180

Query: 190 ISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           + +    ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R++ ++K  D   GN
Sbjct: 181 VHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKIATLKQNDEPIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T+VKVVKNK+A PFK  EFDIM+GEG+S  GE+ID GV   IVDKSGAWFS+K  +LGQ
Sbjct: 241 RTKVKVVKNKVAPPFKVAEFDIMFGEGVSHEGEIIDYGVSLDIVDKSGAWFSYKETKLGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           G+ENSK FL+E+ EI   I S ++ + G+  + ++     +T++D D
Sbjct: 301 GKENSKAFLKEHPEIVSEIVSAIKSSMGI--EHIINNAGKDTEEDND 345


>gi|319764879|ref|YP_004128816.1| reca protein [Alicycliphilus denitrificans BC]
 gi|330827084|ref|YP_004390387.1| recA protein [Alicycliphilus denitrificans K601]
 gi|317119440|gb|ADV01929.1| recA protein [Alicycliphilus denitrificans BC]
 gi|329312456|gb|AEB86871.1| recA protein [Alicycliphilus denitrificans K601]
          Length = 369

 Score =  354 bits (909), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 214/316 (67%), Positives = 273/316 (86%), Gaps = 1/316 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 26  IEKQFGKGTIMRLGE-GEAIEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 84

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGTCAF+DAEHALD+ YA+KLGV++ ++LISQPDTGEQALEI D LVR
Sbjct: 85  LTLQVIAEMQKLGGTCAFIDAEHALDTAYAQKLGVNINDILISQPDTGEQALEIVDSLVR 144

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT++I ++ C+++FINQ
Sbjct: 145 SGAVDLIVVDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQ 204

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK  D   GN+T+VKVVKNK++ P
Sbjct: 205 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPP 264

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FK  EFDI++GEGIS  GE+ID+GV A I++KSGAW+++ G+++GQGR+N++ FLREN +
Sbjct: 265 FKTAEFDILFGEGISREGEIIDMGVNARILEKSGAWYAYNGEKIGQGRDNAREFLRENPD 324

Query: 323 IAENIESLLRQNAGLV 338
           +A  IE+ +R+  G+ 
Sbjct: 325 LAREIENKVREGLGIA 340


>gi|126046695|gb|ABN73105.1| RecA [Burkholderia sp. 'isolate BCCU2']
          Length = 308

 Score =  354 bits (909), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 219/309 (70%), Positives = 269/309 (87%), Gaps = 1/309 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI
Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  
Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  I
Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299

Query: 328 ESLLRQNAG 336
           E+ +R++ G
Sbjct: 300 ENRIRESLG 308


>gi|132232|sp|P26346|RECA_PROVU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|6006603|emb|CAB56804.1| recA [Proteus vulgaris]
          Length = 325

 Score =  354 bits (909), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 205/310 (66%), Positives = 260/310 (83%), Gaps = 2/310 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD + + G++T
Sbjct: 184 KQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENSKIFLREN 320
            N+  FL+EN
Sbjct: 304 ANACNFLKEN 313


>gi|329115829|ref|ZP_08244546.1| RecA protein [Streptococcus parauberis NCFD 2020]
 gi|326906234|gb|EGE53148.1| RecA protein [Streptococcus parauberis NCFD 2020]
          Length = 379

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 202/356 (56%), Positives = 271/356 (76%), Gaps = 10/356 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  DRRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAASLGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++VIDSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KDS  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKDSSI 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK  E +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKIAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           GQG EN+K FL ++ EI + I+  +R   GL+AD    + A    +  ++ ++DN+
Sbjct: 316 GQGSENAKKFLADHPEIFDEIDHKVRVQVGLIAD----DQAEEAPEKQEEVESDNL 367


>gi|57239577|ref|YP_180713.1| recombinase A [Ehrlichia ruminantium str. Welgevonden]
 gi|58579565|ref|YP_197777.1| recombinase A [Ehrlichia ruminantium str. Welgevonden]
 gi|58617618|ref|YP_196817.1| recombinase A [Ehrlichia ruminantium str. Gardel]
 gi|76363325|sp|Q5FGJ5|RECA_EHRRG RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|76363326|sp|Q5HA31|RECA_EHRRW RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|57161656|emb|CAH58585.1| RecA protein (Recombinase A) [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417230|emb|CAI28343.1| RecA protein (Recombinase A) [Ehrlichia ruminantium str. Gardel]
 gi|58418191|emb|CAI27395.1| RecA protein (Recombinase A) [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 357

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 220/356 (61%), Positives = 286/356 (80%), Gaps = 4/356 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   K +N  D+ KAL+ A+SQI++ +G+GAIM+L  +    E I+ + +GS+ LD ALG
Sbjct: 1   MSDTKNLNH-DRQKALDNAISQIEKAFGRGAIMKL--KQGAIEKIDSIPTGSIALDTALG 57

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGGFPKGRI+EI+GPESSGKTTLALH IA+SQK GG CAF+DAEHALD +YARKLGV+  
Sbjct: 58  IGGFPKGRIIEIFGPESSGKTTLALHVIAESQKKGGNCAFIDAEHALDIMYARKLGVNTG 117

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +L++SQPDTGEQAL I + L+ SGA+D+IV+DSVAALTPRAEIEGDMG+   G+QARL+S
Sbjct: 118 DLIVSQPDTGEQALHIVEYLICSGAIDVIVVDSVAALTPRAEIEGDMGDQHMGLQARLLS 177

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
            ALRKLTS +S++ CIL+FINQ+RMKIGV++G+PETTTGGNALKFYSSVRLDIR+V +IK
Sbjct: 178 HALRKLTSIVSKANCILIFINQIRMKIGVVYGNPETTTGGNALKFYSSVRLDIRKVSAIK 237

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           DKD I GNQT+VKVVKNK+A PFKQV+FDIMY EGIS  GE+ID+GVK +IV+K+G+++S
Sbjct: 238 DKDVIIGNQTKVKVVKNKVAPPFKQVDFDIMYNEGISKVGEIIDMGVKLNIVEKAGSYYS 297

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ-EPAINTKDDAD 355
           +   RLGQG+EN+K++L+ N   A+ IE  +R +     + +      +++  D D
Sbjct: 298 YNSVRLGQGKENAKLYLKNNPSTADEIEQKIRASLQASDNDVSCFNAEVDSISDMD 353


>gi|242309390|ref|ZP_04808545.1| protein recA [Helicobacter pullorum MIT 98-5489]
 gi|239523961|gb|EEQ63827.1| protein recA [Helicobacter pullorum MIT 98-5489]
          Length = 345

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 213/349 (61%), Positives = 277/349 (79%), Gaps = 10/349 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KA+E A+ QI + +GKGA+++LG +    E I+ +S+GSLGLDIALGIGG PKGRI+
Sbjct: 6   NKQKAIELAIKQIDKAFGKGALIRLGDKP--VEKIDSISTGSLGLDIALGIGGIPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLAL  +A+ QK GG CAF+DAEHALD  YA++LGVD++NLL+SQPD G
Sbjct: 64  EIYGPESSGKTTLALQIVAECQKKGGICAFIDAEHALDVTYAKRLGVDVENLLVSQPDFG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L RSG VD+I++DSVAALTP++EIEGDMG+   G+QARLMSQALRK+T  I
Sbjct: 124 EQALEILETLTRSGGVDLIIVDSVAALTPKSEIEGDMGDQHVGLQARLMSQALRKVTGII 183

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIGVM +GSPETTTGGNALKFY+SVR+D+RR+ ++K  +   GN+
Sbjct: 184 HKMNTTVIFINQIRMKIGVMGYGSPETTTGGNALKFYASVRIDVRRIATLKQGEQNIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF+  EFDIM+GEGIS  GELID GVK  IVDKSGAWFS++ ++LGQG
Sbjct: 244 VKAKVVKNKVAPPFRGAEFDIMFGEGISKEGELIDYGVKLDIVDKSGAWFSYEDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           +EN+KIFL+EN +IA+ IE  ++ +  L  D       +++ DD + +D
Sbjct: 304 KENAKIFLKENPQIAQEIEDKIKASISLTDD-------LSSSDDENLED 345


>gi|282850497|ref|ZP_06259876.1| RecA protein [Veillonella parvula ATCC 17745]
 gi|294793991|ref|ZP_06759128.1| protein RecA [Veillonella sp. 3_1_44]
 gi|282579990|gb|EFB85394.1| RecA protein [Veillonella parvula ATCC 17745]
 gi|294455561|gb|EFG23933.1| protein RecA [Veillonella sp. 3_1_44]
          Length = 346

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 205/346 (59%), Positives = 272/346 (78%), Gaps = 1/346 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M +  +  AL+ AL QI++ +GKGAIM+LG        +EV+SSGSL +DIA+G+GGFP+
Sbjct: 1   MAVDGRQAALDNALKQIEKDFGKGAIMRLGEAADRMN-VEVISSGSLAIDIAVGVGGFPR 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++EIYGPESSGKTT+ALH +A++QK GG  AF+DAEHA+D +YAR LGVD+ NLLISQ
Sbjct: 60  GRVIEIYGPESSGKTTVALHAVAEAQKQGGIAAFIDAEHAMDPVYARNLGVDINNLLISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT+ LVRSGAVDI+V+DSVAAL P+AEI+G+MG++  G+QARLMS+ALRKL
Sbjct: 120 PDNGEQALEITEALVRSGAVDIVVVDSVAALVPKAEIDGEMGDAHVGLQARLMSKALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T  IS+SK +++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+R+   IK  +   
Sbjct: 180 TGIISKSKTVVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRKGELIKANNENV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T+VKVVKNK+A PFK  EFD+MYGEGIS  G LID+G    I++KSGAW+S+ G+R+
Sbjct: 240 GARTKVKVVKNKVAPPFKTAEFDLMYGEGISKTGTLIDIGTNMEIINKSGAWYSYNGERM 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GQG+E +K +L EN +IA+ I+ ++R    +  + +       T++
Sbjct: 300 GQGKEAAKQYLLENPQIADEIDRIIRDTLAVGTEEIDVIGEEVTEE 345


>gi|296803068|gb|ADH51610.1| DNA recombinase [Burkholderia cenocepacia]
          Length = 310

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 217/311 (69%), Positives = 269/311 (86%), Gaps = 1/311 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+T VKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETFVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGE IS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGECISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLRQNAGL 337
           IE+ +R++ G+
Sbjct: 300 IENRIRESLGV 310


>gi|256419900|ref|YP_003120553.1| recA protein [Chitinophaga pinensis DSM 2588]
 gi|256034808|gb|ACU58352.1| recA protein [Chitinophaga pinensis DSM 2588]
          Length = 336

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 207/327 (63%), Positives = 265/327 (81%), Gaps = 2/327 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             DK KAL   + +I++ +GKG++M +G +G+  + +EV+S+GSLGLDIALGIGGFPKGR
Sbjct: 5   NTDKLKALRLTMDKIEKDFGKGSVMMMGEKGT--DPMEVISTGSLGLDIALGIGGFPKGR 62

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTT+A+HTIA++QK GG CA +DAEHA DS YA++LGVD+  LLISQPD
Sbjct: 63  IIEIYGPESSGKTTVAIHTIAEAQKKGGICAIIDAEHAFDSSYAQRLGVDVDALLISQPD 122

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GEQALEI D L+ SGAVD++VIDSVAAL P+ E+EG+MGES  G+QARLMSQALRKLT+
Sbjct: 123 HGEQALEIADRLILSGAVDVVVIDSVAALVPKGELEGEMGESKMGLQARLMSQALRKLTA 182

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +IS++ C  +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR+  IKD D   GN
Sbjct: 183 TISKTNCCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRMTQIKDGDEAVGN 242

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + +VKVVKNK+A PF+Q EFDI++G+GIS  GE+ID+GV+  I+ KSG+WFS+   +LGQ
Sbjct: 243 RVKVKVVKNKVAPPFRQAEFDIIFGQGISKMGEIIDMGVEYGIIQKSGSWFSYDTNKLGQ 302

Query: 309 GRENSKIFLRENIEIAENIESLLRQNA 335
           GR+  K  L +N E+A  IE  ++   
Sbjct: 303 GRDAVKTLLLDNPEVAAEIERKIKAKL 329


>gi|70726629|ref|YP_253543.1| recombinase A [Staphylococcus haemolyticus JCSC1435]
 gi|76363342|sp|Q4L5Y8|RECA_STAHJ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|68447353|dbj|BAE04937.1| RecA protein [Staphylococcus haemolyticus JCSC1435]
          Length = 348

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 196/337 (58%), Positives = 255/337 (75%), Gaps = 2/337 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+  +  +++ +GKGA+M+LG               S+ LD ALG+GG+PKGRI+
Sbjct: 4   DRQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSVSSG--SVTLDNALGVGGYPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD +YA  LGVD+ NL +SQPD G
Sbjct: 62  EIYGPESSGKTTVALHAIAEVQKNGGVAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI +  VRSGAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 122 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S    +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T
Sbjct: 182 SKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYG+GIS  GE+IDLGV+  IVDKSGAW+S+ G R+GQG+
Sbjct: 242 KIKVVKNKVAPPFRVAEVDIMYGQGISKEGEVIDLGVENDIVDKSGAWYSYNGDRMGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           EN K +L+EN ++ E I+  LR+  G+    + ++  
Sbjct: 302 ENVKTYLKENPQVKEEIDRKLREKLGIFDGDVDEKEE 338


>gi|171778531|ref|ZP_02919658.1| hypothetical protein STRINF_00510 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282754|gb|EDT48178.1| hypothetical protein STRINF_00510 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 392

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 202/368 (54%), Positives = 274/368 (74%), Gaps = 17/368 (4%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 26  ERKKALDDALKLIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 83

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 84  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 143

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G++  G+QAR+MSQA+RKL++SI
Sbjct: 144 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDNHVGLQARMMSQAMRKLSASI 203

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+R    IK     KDS  
Sbjct: 204 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRGNTQIKGTGDQKDSNI 263

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK  E +IMYGEGIS  GELI +     I+ K+GAWFS+ G+++
Sbjct: 264 GKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTGELIKIASDLDIIKKAGAWFSYNGEKI 323

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA-----------D 355
           GQG EN+K +L ++ EI + I+  +R + GLV ++  ++ A  +++ A           D
Sbjct: 324 GQGSENAKKYLADHPEIFDEIDHKVRVHYGLVEETEDEKAAKLSEESAVTTENVDEVILD 383

Query: 356 KDDTDNVE 363
            DD   +E
Sbjct: 384 LDDAIEIE 391


>gi|312143612|ref|YP_003995058.1| recA protein [Halanaerobium sp. 'sapolanicus']
 gi|311904263|gb|ADQ14704.1| recA protein [Halanaerobium sp. 'sapolanicus']
          Length = 345

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 195/331 (58%), Positives = 261/331 (78%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   DK KAL+ A+ +I++ +GKG+IM+LG   S+   +E + +G+L LD+ALG+GG P+
Sbjct: 1   MATKDKEKALDQAVKRIEKQFGKGSIMKLGEASSL--NVEAIPTGALPLDLALGVGGIPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E+YG ESSGKTTL LH IA++QK  G  AF+DAEHALD  YA+ LGV++ NLLISQ
Sbjct: 59  GRIIELYGNESSGKTTLGLHIIAEAQKLDGIAAFIDAEHALDPKYAKNLGVNIDNLLISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+GE+ALEI + LVRS A+D+++IDSVAAL P+AE+EGDMG+S  G+QARLMSQA+RKL
Sbjct: 119 PDSGEEALEIAEALVRSNAIDLVIIDSVAALVPKAELEGDMGDSHMGLQARLMSQAMRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + +IS+S   ++FINQ+R KIGVMFG+PETT GG ALKFYSSVR+++RR  +IKD D + 
Sbjct: 179 SGAISKSHTAIIFINQIREKIGVMFGNPETTPGGRALKFYSSVRIEMRRSQTIKDGDKLI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G+  +VKVVKNK+A+PF+  EFDIMYG GIS  G ++DLGV   IVD++G+W+S+   RL
Sbjct: 239 GSTAKVKVVKNKVAAPFRSAEFDIMYGTGISRSGCVLDLGVDTGIVDRAGSWYSYGDVRL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQGR+NSK FL++N +I   I+  +R   GL
Sbjct: 299 GQGRQNSKEFLQDNPDILNEIDEKIRVKVGL 329


>gi|323142772|ref|ZP_08077485.1| RecA protein [Succinatimonas hippei YIT 12066]
 gi|322417417|gb|EFY08038.1| RecA protein [Succinatimonas hippei YIT 12066]
          Length = 388

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 218/358 (60%), Positives = 277/358 (77%), Gaps = 9/358 (2%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
             + KALE A+ QI++ +GKGAIM+LG   S  + IE +S+GSL LDIALGIGG P GRI
Sbjct: 24  AKRQKALEMAMEQIEKQFGKGAIMRLG--QSEIDDIEAISTGSLSLDIALGIGGLPMGRI 81

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTL L  IAQ+QK G  CAF+DAEHALD +YA+KLGV ++N+ ISQPDT
Sbjct: 82  IEIYGPESSGKTTLTLELIAQAQKKGKICAFIDAEHALDPVYAKKLGVQVENVFISQPDT 141

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + LVRSG +D++VIDSVAAL P+AEIEGDMG++  G+QARLMSQALRKLT  
Sbjct: 142 GEQALEICETLVRSGGIDLVVIDSVAALVPKAEIEGDMGDNHVGLQARLMSQALRKLTGI 201

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I ++ C++VFINQ+RMKIGVMFG+PETTTGGNALK+Y+SVRLDIR+   IKDK+ + GN+
Sbjct: 202 IKQANCMVVFINQLRMKIGVMFGNPETTTGGNALKYYASVRLDIRKGSPIKDKEEVIGNE 261

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           T+VKVVKNK+A PFKQ  F I++  GI+  GELIDLGV+A IV+K+GAWFS+ G ++GQG
Sbjct: 262 TKVKVVKNKVAPPFKQANFQILFNYGIAKNGELIDLGVQARIVEKTGAWFSYNGNKIGQG 321

Query: 310 RENSKIFLRENIEIAENIESLLRQ------NAGLVADSLLQEPAINTKDD-ADKDDTD 360
           + N+  FL E+ E+A+ IE+ +R+      +    AD    E   +  D   D DD+D
Sbjct: 322 KVNAMRFLDEHPEVADEIEAKIREYFKNVNDYSATADLGAAEAEKSPVDSLPDIDDSD 379


>gi|31540539|gb|AAP49232.1| RecA [Mycobacterium album]
          Length = 308

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 194/305 (63%), Positives = 254/305 (83%), Gaps = 2/305 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 6   PDREKALELAMAQIDKNFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 64  IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 124 GEQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+
Sbjct: 184 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVK+VKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG
Sbjct: 244 TRVKIVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQG 303

Query: 310 RENSK 314
           +EN++
Sbjct: 304 KENAR 308


>gi|148543758|ref|YP_001271128.1| recombinase A [Lactobacillus reuteri DSM 20016]
 gi|184153164|ref|YP_001841505.1| recombinase A [Lactobacillus reuteri JCM 1112]
 gi|227363262|ref|ZP_03847394.1| recombination protein A [Lactobacillus reuteri MM2-3]
 gi|325682130|ref|ZP_08161648.1| recombination protein A [Lactobacillus reuteri MM4-1A]
 gi|166918712|sp|A5VIW7|RECA_LACRD RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|229892800|sp|B2G6E3|RECA_LACRJ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|148530792|gb|ABQ82791.1| RecA protein [Lactobacillus reuteri DSM 20016]
 gi|183224508|dbj|BAG25025.1| recombinase RecA [Lactobacillus reuteri JCM 1112]
 gi|227071718|gb|EEI10009.1| recombination protein A [Lactobacillus reuteri MM2-3]
 gi|324978774|gb|EGC15723.1| recombination protein A [Lactobacillus reuteri MM4-1A]
          Length = 362

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 190/342 (55%), Positives = 265/342 (77%), Gaps = 4/342 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ A+ +I++ +GKG+IM++G    +   +  VSSGSL +D ALGIGG+P+GRIVE
Sbjct: 5   RKAALDVAIRKIEKNFGKGSIMRMGDATDM--KVASVSSGSLAIDKALGIGGYPRGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH +A+ Q+ GGT A++DAE+ALD  YA  LGV++ +LL+SQPD+GE
Sbjct: 63  IYGPESSGKTTVALHAVAEVQRQGGTAAYIDAENALDPQYAEALGVNIDDLLLSQPDSGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           + LEI D L+ SGAVD++++DSVAAL PRAEI+GDMG++  G+QARLMSQALRKL+  I+
Sbjct: 123 EGLEIADALISSGAVDLVIVDSVAALVPRAEIDGDMGDTHVGLQARLMSQALRKLSGEIN 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++K I +FINQ+R K+GVMFG+PETTTGG ALKFYS++R++IRR   IK+   + GN+ +
Sbjct: 183 KTKTIAIFINQIREKVGVMFGNPETTTGGRALKFYSTIRMEIRRAEQIKNGTDVIGNKAK 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNK+A PFK+ E DIMYGEGIS  GEL+D+ V+  +VDKSGAW+S+  +R+GQGRE
Sbjct: 243 VKIVKNKVAPPFKRCEVDIMYGEGISKTGELLDMAVENDLVDKSGAWYSYGSERIGQGRE 302

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           N+K +L+E+ +    +   +R   G+  + L ++    T DD
Sbjct: 303 NAKKWLKEHPDSMNELMDKVRVANGM--EPLNEKSTKETADD 342


>gi|325270385|ref|ZP_08136990.1| recombination protein A [Prevotella multiformis DSM 16608]
 gi|324987329|gb|EGC19307.1| recombination protein A [Prevotella multiformis DSM 16608]
          Length = 341

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 208/323 (64%), Positives = 267/323 (82%), Gaps = 2/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+AA+S+I++ +GKG+IM++G +    E +EV+ +GS+ LD ALG+GG+P+GRI+E
Sbjct: 15  KLKALQAAMSKIEKDFGKGSIMRMGDEQ--IEQVEVIPTGSVALDTALGVGGYPRGRIIE 72

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD GE
Sbjct: 73  IFGPESSGKTTLAIHAIAEAQKQGGIAAFIDAEHAFDRFYAEKLGVDVDNLWISQPDNGE 132

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RS A+DI+VIDSVAALTP+ EIEGDMG+S  G+QARLMSQALRKLTS+IS
Sbjct: 133 QALEIADQLIRSSAIDILVIDSVAALTPKKEIEGDMGDSAVGLQARLMSQALRKLTSTIS 192

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGVMFG+PETTTGGNALKFYSSVRLDIRRV SIKD D + GNQ R
Sbjct: 193 KTNTCCIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRVTSIKDGDQVIGNQVR 252

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF++ EF+I +GEGIS  GE++DLGV+  I+ KSG+WFS+K  +L QGR+
Sbjct: 253 VKVVKNKVAPPFRKAEFEITFGEGISKIGEIVDLGVQYGIIKKSGSWFSYKDTKLAQGRD 312

Query: 312 NSKIFLRENIEIAENIESLLRQN 334
            +K  +++N E+AE +E L+++ 
Sbjct: 313 ATKTMIKDNPELAEELEGLIKEA 335


>gi|31540537|gb|AAP49231.1| RecA [Mycobacterium album]
          Length = 308

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 195/305 (63%), Positives = 254/305 (83%), Gaps = 2/305 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 6   PDREKALELAMAQIDKNFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 64  VEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 124 GEQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+
Sbjct: 184 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVK+VKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG
Sbjct: 244 TRVKIVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQG 303

Query: 310 RENSK 314
           +EN++
Sbjct: 304 KENAR 308


>gi|315221503|ref|ZP_07863423.1| protein RecA [Streptococcus anginosus F0211]
 gi|315189337|gb|EFU23032.1| protein RecA [Streptococcus anginosus F0211]
          Length = 381

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 196/357 (54%), Positives = 269/357 (75%), Gaps = 6/357 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGAIM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERQKALDTALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA+ LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAQALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++VIDSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+G+MFG+PETT GG ALKFY+SVRLD+R    IK    +KD+  
Sbjct: 196 NKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDEKDTNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GELI +     I+ K+GAW+S+  +++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           GQG EN+K +L ++ EI + I+  +R + GL+ D    E        A+K +   ++
Sbjct: 316 GQGSENAKKYLADHPEIFDEIDHKVRVHYGLIEDDAEDEKNSEATKSANKVEEVTLD 372


>gi|301301366|ref|ZP_07207508.1| RecA protein [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851026|gb|EFK78768.1| RecA protein [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 381

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 198/359 (55%), Positives = 268/359 (74%), Gaps = 8/359 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+AAL +I++ +GKG+IM++G  G +   I  +SSGS+ +D  LG+GG+P+GRI+
Sbjct: 15  ERLKALDAALKKIEKKFGKGSIMKMG--GKVDTKISTISSGSIAIDAGLGVGGYPRGRII 72

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  YA  LGV++  LL+SQPDTG
Sbjct: 73  EIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPAYATALGVNIDELLLSQPDTG 132

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI D LV SGA+DIIV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I
Sbjct: 133 EQGLEIADALVSSGAIDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGTI 192

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +++K + +FINQ+R K+GVMFG+PETT GG ALKFYS+VR+++RR  +IK K  I GN+T
Sbjct: 193 NKTKTVAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRMEVRRSEAIKAKSEIIGNRT 252

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++K  KNK+A PFK  E DIMYGEGIS  GEL+D+ V+  I+ KSG+WFS+   R+GQGR
Sbjct: 253 KIKFAKNKVAPPFKVAEVDIMYGEGISKTGELLDMAVEKDIIHKSGSWFSYGDTRIGQGR 312

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL------VADSLLQEPAINTKDDADKDDTDNVE 363
           EN+K +L E+ +    I   +R+  G+      V +S  +    +  DD   D  D+ E
Sbjct: 313 ENAKEYLSEHEDEMNEINIKVREAYGIPDENGNVPESQDKNTTQSAMDDKAADIDDSEE 371


>gi|296803066|gb|ADH51609.1| DNA recombinase [Burkholderia cenocepacia]
          Length = 309

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 219/310 (70%), Positives = 270/310 (87%), Gaps = 1/310 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  IAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI
Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  
Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  I
Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299

Query: 328 ESLLRQNAGL 337
           E+ +R++ G+
Sbjct: 300 ENRIRESLGV 309


>gi|296837401|gb|ADH59559.1| DNA recombinase [Burkholderia contaminans]
          Length = 310

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 219/311 (70%), Positives = 270/311 (86%), Gaps = 1/311 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+
Sbjct: 60  AELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG
Sbjct: 120 IVIDSVAALAPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  F
Sbjct: 180 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 239

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           DI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE
Sbjct: 240 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 299

Query: 329 SLLRQNAGLVA 339
           + +R++ G+V 
Sbjct: 300 NRIRESLGVVT 310


>gi|227538654|ref|ZP_03968703.1| recombination protein RecA [Sphingobacterium spiritivorum ATCC
           33300]
 gi|300770190|ref|ZP_07080069.1| recombination protein A [Sphingobacterium spiritivorum ATCC 33861]
 gi|227241573|gb|EEI91588.1| recombination protein RecA [Sphingobacterium spiritivorum ATCC
           33300]
 gi|300762666|gb|EFK59483.1| recombination protein A [Sphingobacterium spiritivorum ATCC 33861]
          Length = 337

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 210/339 (61%), Positives = 266/339 (78%), Gaps = 2/339 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+  DK KAL+  L ++++ YGKG IM+LG   S  E IE +S+GSLGLDIALGIGG PK
Sbjct: 1   MSNQDKLKALQLTLDKLEKSYGKGTIMKLGD--SAVEPIESISTGSLGLDIALGIGGVPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTTLA H +A++QK GG  A +DAEHA D  YA+KLGVD++NLLISQ
Sbjct: 59  GRIIEIYGPESSGKTTLATHIVAEAQKKGGIAAIIDAEHAFDKYYAQKLGVDVENLLISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQ LEI D L+RSGA+D+IVIDSVAAL P+ EIEG+MG+S  G+QARLMSQALRKL
Sbjct: 119 PDNGEQGLEIADNLIRSGAIDVIVIDSVAALVPKGEIEGEMGDSKMGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T +IS++ C  +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IKD D ++
Sbjct: 179 TGTISKTNCCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRTSQIKDSDEVS 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ +VK+VKNK+A PF+  EFDIM+GEGIS  GE+IDLGV+ +I+ KSG+WFS+   +L
Sbjct: 239 GNRVKVKIVKNKVAPPFRIAEFDIMFGEGISKVGEIIDLGVEYNIIKKSGSWFSYGDTKL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           GQGR+  K  L++N ++ + +E  ++     V   +  E
Sbjct: 299 GQGRDAVKSLLQDNPDLMDELEQKIKAEVSGVEAVVEPE 337


>gi|222153873|ref|YP_002563050.1| recombinase A [Streptococcus uberis 0140J]
 gi|254790450|sp|B9DW65|RECA_STRU0 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|222114686|emb|CAR43767.1| RecA recombinase (recombinase A) [Streptococcus uberis 0140J]
          Length = 379

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 206/363 (56%), Positives = 271/363 (74%), Gaps = 12/363 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  DRRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++VIDSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KDS  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKDSSI 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK  E +IMYGEGIS  GELI +     ++ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELIKIASDLDVIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLL---QEPAINTKDDA---DKDDTD 360
           GQG EN+K FL ++ EI + I+  +R   GL+ D +L   QE     + D    D DD  
Sbjct: 316 GQGSENAKKFLADHPEIFDEIDHKVRVKVGLLEDEVLDNNQETVELPETDEFILDLDDAI 375

Query: 361 NVE 363
            +E
Sbjct: 376 EIE 378


>gi|298372181|ref|ZP_06982171.1| protein RecA [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275085|gb|EFI16636.1| protein RecA [Bacteroidetes oral taxon 274 str. F0058]
          Length = 351

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 211/355 (59%), Positives = 271/355 (76%), Gaps = 4/355 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M  +      DK KAL+ A+ +I++ +GKG IM+LG      E + V+ SGS+GL+ ALG
Sbjct: 1   MSNQNNAPSADKLKALQLAMDKIEKDHGKGTIMKLGDDN--IEDVSVIPSGSIGLNAALG 58

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG+P+GRI+EIYGPESSGKTTLA+H IA++QK GG  A +DAEHA D  YA++LGVD+ 
Sbjct: 59  VGGYPRGRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAIIDAEHAFDRFYAKQLGVDVD 118

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NLLISQPD+GEQALEI D L+RS A+DI+VIDSVAALTP+AE+EGDMG++  G+QARLMS
Sbjct: 119 NLLISQPDSGEQALEIADQLIRSSALDILVIDSVAALTPKAELEGDMGDNKVGLQARLMS 178

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT+SISR+    +FINQ+R KIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK
Sbjct: 179 QALRKLTASISRTNTTCIFINQLREKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAIK 238

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           + D+  GNQTRVKVVKNK+A PF++ EFDIM+G+GIS  GE+IDLGV   I+ KSG+WFS
Sbjct: 239 EGDTHFGNQTRVKVVKNKVAPPFRKAEFDIMFGQGISRSGEIIDLGVDYGIIKKSGSWFS 298

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           +   +L QGR+ SK  + EN E+ + +E+ +     L  +    +     KD  +
Sbjct: 299 YGDSKLAQGRDASKKVIEENPELTQELEAKIMAA--LKENKDAPKETKKEKDSKE 351


>gi|194468320|ref|ZP_03074306.1| recA protein [Lactobacillus reuteri 100-23]
 gi|194453173|gb|EDX42071.1| recA protein [Lactobacillus reuteri 100-23]
          Length = 362

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 190/342 (55%), Positives = 265/342 (77%), Gaps = 4/342 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ A+ +I++ +GKG+IM++G    +   +  VSSGSL +D ALGIGG+P+GRIVE
Sbjct: 5   RKAALDVAIRKIEKNFGKGSIMRMGDATDM--KVASVSSGSLAIDKALGIGGYPRGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH +A+ Q+ GGT A++DAE+ALD  YA  LGV++ +LL+SQPD+GE
Sbjct: 63  IYGPESSGKTTVALHAVAEVQRQGGTAAYIDAENALDPQYAEALGVNIDDLLLSQPDSGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           + LEI D L+ SGAVD++++DSVAAL PRAEI+GDMG++  G+QARLMSQALRKL+  I+
Sbjct: 123 EGLEIADALISSGAVDLVIVDSVAALVPRAEIDGDMGDTHVGLQARLMSQALRKLSGEIN 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++K I +FINQ+R K+GVMFG+PETTTGG ALKFYS++R++IRR   IK+   + GN+ +
Sbjct: 183 KTKTIAIFINQIREKVGVMFGNPETTTGGRALKFYSTIRMEIRRAEQIKNGTDVIGNKAK 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNK+A PFK+ E DIMYGEGIS  GEL+D+ V+  +VDKSGAW+S+  +R+GQGRE
Sbjct: 243 VKIVKNKVAPPFKRCEVDIMYGEGISKTGELLDMAVENDLVDKSGAWYSYGSERIGQGRE 302

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           N+K +L+E+ +    +   +R   G+  + L ++    T DD
Sbjct: 303 NAKKWLKEHPDSMNELMDKVRVANGM--EPLNEKSTKETTDD 342


>gi|264680913|ref|YP_003280823.1| recA protein [Comamonas testosteroni CNB-2]
 gi|262211429|gb|ACY35527.1| recA protein [Comamonas testosteroni CNB-2]
          Length = 369

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 217/316 (68%), Positives = 275/316 (87%), Gaps = 1/316 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR++EIYGPESSGKT
Sbjct: 24  QIEKQFGKGTIMKLGE-GEAIEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKT 82

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGTCAF+DAEHALD+ YA+KLGV+L ++LISQPDTGEQALEI D LV
Sbjct: 83  TLTLQVIAEMQKQGGTCAFIDAEHALDTSYAQKLGVNLSDVLISQPDTGEQALEICDSLV 142

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD+IVIDSVAALTP+AEIEG+MG++LPG+QARLMSQALRKLT++I ++ C+++FIN
Sbjct: 143 RSGAVDLIVIDSVAALTPKAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFIN 202

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK  D   GN+T+VKVVKNK++ 
Sbjct: 203 QIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSP 262

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PFK  EFDI++GEGIS  GE++D+GV A I++KSGAW+++ G+++GQGR+NS+ FLREN 
Sbjct: 263 PFKTAEFDILFGEGISREGEILDMGVNAKILEKSGAWYAYNGEKIGQGRDNSREFLRENP 322

Query: 322 EIAENIESLLRQNAGL 337
            +A  IE+ +R++ G+
Sbjct: 323 ALAIEIENKVRESLGI 338


>gi|224551701|gb|ACN54250.1| RecA [Burkholderia cenocepacia]
          Length = 313

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 217/314 (69%), Positives = 270/314 (85%), Gaps = 1/314 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +G+G+IM++G  G   + I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L
Sbjct: 1   QFGEGSIMRMGD-GEAADNIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTL 59

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+
Sbjct: 60  QVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGS 119

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RM
Sbjct: 120 IDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRM 179

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++
Sbjct: 180 KIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRE 239

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
             FDI+YGEGIS  GE+IDLG +A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA 
Sbjct: 240 AIFDILYGEGISRQGEIIDLGAQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAR 299

Query: 326 NIESLLRQNAGLVA 339
            IE+ +R++ G  A
Sbjct: 300 EIENRIRESLGSSA 313


>gi|330997705|ref|ZP_08321550.1| RecA protein [Paraprevotella xylaniphila YIT 11841]
 gi|329570233|gb|EGG51973.1| RecA protein [Paraprevotella xylaniphila YIT 11841]
          Length = 360

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 202/324 (62%), Positives = 262/324 (80%), Gaps = 2/324 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
              +K KAL+AA+ +I++ +GKG+IM+LG      E ++V+ +GS+ L+ ALG+GG+P+G
Sbjct: 28  PNTEKLKALQAAMDKIEKNFGKGSIMKLGDD--HVEQVDVIPTGSIALNAALGVGGYPRG 85

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQP
Sbjct: 86  RIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQP 145

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI D L+RS A+DIIVIDSVAALTP+AEIEGDMG++  G+QARLMSQALRKLT
Sbjct: 146 DNGEQALEIADQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLT 205

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           S+I+++    +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRRV SIKD D + G
Sbjct: 206 STINKTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRVTSIKDGDEVIG 265

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           NQ RVKVVKNK+A PF++ EF+I +GEGIS  GE++DLG +  I+ KSG+W+S+   ++G
Sbjct: 266 NQVRVKVVKNKVAPPFRKAEFEITFGEGISKIGEIVDLGTELGILKKSGSWYSYNDTKIG 325

Query: 308 QGRENSKIFLRENIEIAENIESLL 331
           QGR+  K  L++N E+ + +E L+
Sbjct: 326 QGRDAVKKMLKDNPELCDEVEGLI 349


>gi|300869353|ref|ZP_07113943.1| Protein recA [Oscillatoria sp. PCC 6506]
 gi|300332652|emb|CBN59141.1| Protein recA [Oscillatoria sp. PCC 6506]
          Length = 359

 Score =  354 bits (907), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 206/359 (57%), Positives = 266/359 (74%), Gaps = 5/359 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K  +  +K KAL   L+QI+R +GKGAI++LG    +   +E + SG+L LDIALG GG 
Sbjct: 4   KIGDNPEKQKALNLVLNQIERSFGKGAIVRLGDATRMR--VETIPSGALTLDIALG-GGL 60

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGR++EIYGPESSGKTTLALH IA+ QK+GG  AFVDAEHALD  YA  LGVD+ NLL+
Sbjct: 61  PKGRVIEIYGPESSGKTTLALHAIAEVQKSGGIAAFVDAEHALDPSYASVLGVDIVNLLV 120

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGE ALEI D LVRS AVDI+V+DSVAAL PRAEIEGDMG+S  G+QARLMSQALR
Sbjct: 121 SQPDTGEMALEIVDQLVRSVAVDIVVVDSVAALVPRAEIEGDMGDSHMGLQARLMSQALR 180

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           K+T +I +S C ++F+NQ+R KIGV +G+PETTTGGNALKFY+SVRLDIRR+ S+K    
Sbjct: 181 KITGNIGKSGCTVIFLNQLRQKIGVTYGNPETTTGGNALKFYASVRLDIRRIQSLKKGTE 240

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
             GN+ +VKV KNK+A PF+  EFDI++G+GIS  G L+DL  +  I+ K G+W+S+ G 
Sbjct: 241 EYGNRVKVKVAKNKVAPPFRIAEFDIVFGKGISTTGCLVDLAEETGIITKKGSWYSYNGD 300

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            +GQGRE +  +  EN E    IE L+RQ   L + +++   ++   D  D ++ ++VE
Sbjct: 301 NIGQGRETTIKYTDENPEFKTQIEQLVRQK--LASGAVVSANSVAPIDAEDSEEAEDVE 357


>gi|319940107|ref|ZP_08014461.1| recA [Streptococcus anginosus 1_2_62CV]
 gi|319810821|gb|EFW07148.1| recA [Streptococcus anginosus 1_2_62CV]
          Length = 381

 Score =  354 bits (907), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 195/357 (54%), Positives = 268/357 (75%), Gaps = 6/357 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGAIM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERQKALDTALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA+ LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAQALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++VIDSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+G+MFG+PETT GG ALKFY+SVRLD+R    IK    +KD+  
Sbjct: 196 NKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDEKDTNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GELI +     I+ K+GAW+S+  +++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           GQG EN+K +L ++ EI + I+  +R + GL+ D    E         +K +   ++
Sbjct: 316 GQGSENAKKYLADHPEIFDEIDHKVRVHYGLIEDDAEDEKNAEATKSTNKVEEVTLD 372


>gi|167626926|ref|YP_001677426.1| recombinase A [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|241667503|ref|ZP_04755081.1| recombinase A [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254876049|ref|ZP_05248759.1| recombinase A protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|189039595|sp|B0TW17|RECA_FRAP2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|167596927|gb|ABZ86925.1| Calcium-transporting ATPase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|254842070|gb|EET20484.1| recombinase A protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 360

 Score =  354 bits (907), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 214/322 (66%), Positives = 269/322 (83%), Gaps = 1/322 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           + K KALE+ALSQI++ +GKG+IM+LG Q +    I+V+ SG + LD+ALGIGG+PKGRI
Sbjct: 1   MSKEKALESALSQIEKQFGKGSIMRLGDQETAH-DIDVIPSGIIALDVALGIGGYPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYG ESSGKTTL L  IAQ QK GG  AF+DAEHALD  YA+ LGVD+ NL++SQPDT
Sbjct: 60  IEIYGHESSGKTTLTLLAIAQCQKQGGVAAFIDAEHALDPKYAKLLGVDVDNLIVSQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSG +DI+VIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT++
Sbjct: 120 GEQALEIADMLVRSGGIDIVVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTAN 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I RS  +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRL++R+ GSIKD   ++GN+
Sbjct: 180 IKRSNTLVMFINQIRMKIGVMFGNPETTTGGNALKFYASVRLEVRKGGSIKDGVDVSGNE 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VK+VKNK+A PFKQ EF+++YGEGIS   ELIDLG K  I++KSGAW+S+KG+++GQG
Sbjct: 240 IKVKIVKNKVAPPFKQAEFELIYGEGISLEAELIDLGAKYEIIEKSGAWYSYKGKKIGQG 299

Query: 310 RENSKIFLRENIEIAENIESLL 331
           +E SK +L+EN    + IE  L
Sbjct: 300 KEKSKEYLKENTLERDEIEKAL 321


>gi|291278471|ref|YP_003495306.1| DNA recombination protein RecA [Deferribacter desulfuricans SSM1]
 gi|290753173|dbj|BAI79550.1| DNA recombination protein RecA [Deferribacter desulfuricans SSM1]
          Length = 338

 Score =  354 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 206/330 (62%), Positives = 267/330 (80%), Gaps = 2/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALE A+S+I+R +GKGA+M+LG +    E   V+ +G+L LDIALG+GG P+GRI 
Sbjct: 4   NKKKALELAMSKIERDFGKGAVMRLGDKA--IEKPPVIPTGALSLDIALGVGGIPRGRIT 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYG ESSGKTT+ALH IA++QK GG  AF+DAEHALD +YA  +GV+   LLISQPD+G
Sbjct: 62  EIYGSESSGKTTVALHVIAEAQKMGGVAAFIDAEHALDPVYAEAIGVNTDELLISQPDSG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI + LVRSGAVD++V+DSVAALTP+AEIEGDMG++  G+QARLMSQALRKLT+ +
Sbjct: 122 EAALEIAETLVRSGAVDVVVVDSVAALTPKAEIEGDMGDAHMGLQARLMSQALRKLTAIV 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK  L+FINQ R KIGVMFG+PETTTGGNALKFY+++R++IRR  S+KDKD + GNQ 
Sbjct: 182 NKSKTALIFINQTRQKIGVMFGNPETTTGGNALKFYATIRIEIRRTSSLKDKDQVVGNQV 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
             KVVKNK+A PFKQ EFDI++GEGIS  G LID+G+K  +++K+GAWFS+   RLGQG+
Sbjct: 242 ICKVVKNKVAPPFKQAEFDILFGEGISKEGVLIDMGIKEGLINKAGAWFSYGDIRLGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           EN++ +L+E+ EIA+ IE  +R   GL  +
Sbjct: 302 ENARSYLKEHPEIAQEIEEKIRSKYGLAEN 331


>gi|270293421|ref|ZP_06199630.1| RecA protein [Streptococcus sp. M143]
 gi|270278270|gb|EFA24118.1| RecA protein [Streptococcus sp. M143]
          Length = 382

 Score =  354 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 197/363 (54%), Positives = 266/363 (73%), Gaps = 6/363 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +D   +    D+ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG
Sbjct: 8   LDEISKKFGADREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALG 65

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++ 
Sbjct: 66  SGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNID 125

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPD+GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+GD+G+S  G+QAR+MS
Sbjct: 126 ELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMS 185

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK
Sbjct: 186 QAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIK 245

Query: 241 ----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
                KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+G
Sbjct: 246 GTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIKKAG 305

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           AW+S+K +++GQG EN+K +L ++ E+ + I+  +R   GL+ D     P    +D A  
Sbjct: 306 AWYSYKDEKIGQGSENAKKYLADHPEVFDEIDHQVRVQYGLIEDEEGTTPTSVVEDLAPN 365

Query: 357 DDT 359
            + 
Sbjct: 366 QEV 368


>gi|269798259|ref|YP_003312159.1| recA protein [Veillonella parvula DSM 2008]
 gi|294792120|ref|ZP_06757268.1| protein RecA [Veillonella sp. 6_1_27]
 gi|269094888|gb|ACZ24879.1| recA protein [Veillonella parvula DSM 2008]
 gi|294457350|gb|EFG25712.1| protein RecA [Veillonella sp. 6_1_27]
          Length = 346

 Score =  354 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 204/346 (58%), Positives = 272/346 (78%), Gaps = 1/346 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M +  +  AL+ AL QI++ +GKGAIM+LG        +EV+SSGSL +DIA+G+GGFP+
Sbjct: 1   MAVDGRQAALDNALKQIEKDFGKGAIMRLGEAADRMN-VEVISSGSLAIDIAVGVGGFPR 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++EIYGPESSGKTT+ALH +A++QK GG  AF+DAEHA+D +YAR LGVD+ NLLISQ
Sbjct: 60  GRVIEIYGPESSGKTTVALHAVAEAQKQGGIAAFIDAEHAMDPVYARNLGVDINNLLISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT+ LVRSGAVDI+V+DSVAAL P+AEI+G+MG++  G+QARLMS+ALRKL
Sbjct: 120 PDNGEQALEITEALVRSGAVDIVVVDSVAALVPKAEIDGEMGDAHVGLQARLMSKALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T  IS+SK +++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+R+   IK  +   
Sbjct: 180 TGIISKSKTVVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRKGELIKANNENV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T+VKVVKNK+A PFK  EFD+MYGEGIS  G LID+G    I++KSGAW+S+ G+R+
Sbjct: 240 GARTKVKVVKNKVAPPFKTAEFDLMYGEGISKTGTLIDIGTNMEIINKSGAWYSYNGERM 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GQG+E +K +L +N +IA+ I+ ++R    +  + +       T++
Sbjct: 300 GQGKEAAKQYLLDNPQIADEIDRIIRDTLAVGTEEIDVIGEEVTEE 345


>gi|312870471|ref|ZP_07730591.1| RecA protein [Lactobacillus oris PB013-T2-3]
 gi|311094028|gb|EFQ52352.1| RecA protein [Lactobacillus oris PB013-T2-3]
          Length = 358

 Score =  354 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 185/328 (56%), Positives = 253/328 (77%), Gaps = 2/328 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL +I++ +GKG+IM++G    +   I  VSSGSL +D ALG+GG+P+GRIVE
Sbjct: 5   RKAALDKALQKIEKNFGKGSIMRMGDAADM--KIATVSSGSLAIDKALGVGGYPRGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH +A+ Q+ GGT A++DAE+ALD  YA  LGVD+ NLL+SQPDTGE
Sbjct: 63  IYGPESSGKTTVALHAVAEVQRQGGTVAYIDAENALDPQYAEALGVDVDNLLLSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           + L I D L+ + A+D++VIDSVAAL P+AEI+GDMG+   G+QARLMSQALRKL+  I+
Sbjct: 123 EGLAIADALIATSAIDLVVIDSVAALVPQAEIDGDMGDHHVGLQARLMSQALRKLSGEIN 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++K I +FINQ+R K+GVMFG+PETTTGG ALKFYS++R++IRR   IK+   + GN+ +
Sbjct: 183 KTKTIAIFINQIREKVGVMFGNPETTTGGRALKFYSTIRMEIRRAEQIKNGTDVIGNKAK 242

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNK+A PFK+ E DIMYGEGIS  GEL+D+ V   +V KSGAW+S+  +R+GQGRE
Sbjct: 243 VKIVKNKVAPPFKRCEVDIMYGEGISKTGELLDMAVDQDLVKKSGAWYSYGNERIGQGRE 302

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVA 339
           N+K +L ++ +    + + +R   G+  
Sbjct: 303 NAKQWLADHPDSMMELMNKVRVANGMKP 330


>gi|60393017|sp|Q9AGW0|RECA_STRAG RecName: Full=Protein RecA; AltName: Full=Recombinase A
          Length = 379

 Score =  354 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 197/351 (56%), Positives = 265/351 (75%), Gaps = 7/351 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRIV
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIV 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+M QA+ KLT+SI
Sbjct: 136 EQDLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMMQAMHKLTASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+R    IK     KD   
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRGNTQIKGTGEHKDHNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PF++   +IMYGEGIS  GELI +     I+ K+GAW+S+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFREAFVEIMYGEGISRTGELIKIASDLDIIQKAGAWYSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA-DSLLQEPAINTKDDADK 356
           GQG EN+K +L +N  I + I+  +R + G+   DS +Q   +  K++AD 
Sbjct: 316 GQGSENAKKYLADNPAIFDEIDHKVRVHFGMTEDDSPVQSELVEEKNEADD 366


>gi|306825898|ref|ZP_07459237.1| recombination protein A [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432259|gb|EFM35236.1| recombination protein A [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 382

 Score =  353 bits (906), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 199/363 (54%), Positives = 267/363 (73%), Gaps = 6/363 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +D   +    D+ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG
Sbjct: 8   LDEISKKFGADREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALG 65

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++ 
Sbjct: 66  SGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNID 125

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPD+GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+GD+G+S  G+QAR+MS
Sbjct: 126 ELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMS 185

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK
Sbjct: 186 QAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIK 245

Query: 241 ----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
                KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+G
Sbjct: 246 GTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIQKAG 305

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           AW+S+KG+++GQG EN+K +L ++ EI + I+  +R   GL+ D     P    +D A  
Sbjct: 306 AWYSYKGEKIGQGSENAKKYLADHPEIFDEIDHQVRVQYGLIEDEEGTVPTSVAEDLAPN 365

Query: 357 DDT 359
            + 
Sbjct: 366 QEV 368


>gi|150171068|emb|CAO01517.1| DNA recombination protein [Burkholderia cenocepacia]
          Length = 308

 Score =  353 bits (906), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 219/309 (70%), Positives = 268/309 (86%), Gaps = 1/309 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM++G      E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRMGD-AEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  IAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI
Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK+A PF++  
Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPPFREAI 239

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  I
Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299

Query: 328 ESLLRQNAG 336
           E+ +R++ G
Sbjct: 300 ENRIRESLG 308


>gi|296803032|gb|ADH51592.1| DNA recombinase [Burkholderia contaminans]
          Length = 305

 Score =  353 bits (906), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 218/306 (71%), Positives = 267/306 (87%), Gaps = 1/306 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299

Query: 327 IESLLR 332
           IE+ +R
Sbjct: 300 IENRIR 305


>gi|62260694|gb|AAX77925.1| unknown protein [synthetic construct]
          Length = 394

 Score =  353 bits (906), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 222/355 (62%), Positives = 284/355 (80%), Gaps = 3/355 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           D  K M  + K KALE+ALSQI++ +GKGAIM+LG Q +    I+V+ SG + LD+ALGI
Sbjct: 19  DDDKHMLEMSKEKALESALSQIEKQFGKGAIMRLGDQEAAH-DIDVIPSGIIALDVALGI 77

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+PKGRI+EIYG ESSGKTTL L  IAQ QK GGT AFVDAEHALD  YA+ LGVD+ N
Sbjct: 78  GGYPKGRIIEIYGHESSGKTTLTLLAIAQCQKQGGTAAFVDAEHALDPKYAKLLGVDVDN 137

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L++SQPDTGEQALEI DMLVRSG VDI+VIDSVAALTP+AEIEGDMG+S  G+QARLMSQ
Sbjct: 138 LIVSQPDTGEQALEIADMLVRSGGVDIVVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQ 197

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT++I RS  +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRL++++ GSIKD
Sbjct: 198 ALRKLTANIKRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLEVKKGGSIKD 257

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
              ++GN+ +VKVVKNK+A PFKQ +F+++YGEGIS   ELIDLG K +I++KSGAW+S+
Sbjct: 258 GIDVSGNEIKVKVVKNKVAPPFKQADFELIYGEGISLEAELIDLGAKYNIIEKSGAWYSY 317

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           KG+++GQG+E SK +L+EN    + IE  + +   L+ +    + + ++  +  K
Sbjct: 318 KGKKIGQGKEKSKEYLKENTAERDEIERAILEL--LLPNKYSNKDSNDSPKEGSK 370


>gi|305665727|ref|YP_003862014.1| recombinase A [Maribacter sp. HTCC2170]
 gi|88710486|gb|EAR02718.1| recombinase A [Maribacter sp. HTCC2170]
          Length = 354

 Score =  353 bits (905), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 212/335 (63%), Positives = 265/335 (79%), Gaps = 7/335 (2%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   KE     K KAL+  L ++ + YGKGA+M++G   S+ E +EV+ SGSLGLDIALG
Sbjct: 21  MSSEKEA----KLKALKLTLDKLDKTYGKGAVMKMGD--SVVEDVEVIPSGSLGLDIALG 74

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG+P+GR++EIYGPESSGKTTL LH IA++QK GG  AF+DAEHA D  YA KLG+D+ 
Sbjct: 75  VGGYPRGRVIEIYGPESSGKTTLTLHAIAEAQKNGGIAAFIDAEHAFDRFYAEKLGIDID 134

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL+ISQPD GEQALEI D L+RSGA+DI+V+DSVAALTP++EIEG+MG+S  G+ ARLMS
Sbjct: 135 NLIISQPDNGEQALEIADNLIRSGAIDIVVVDSVAALTPKSEIEGEMGDSKMGLHARLMS 194

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT SIS++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IK
Sbjct: 195 QALRKLTGSISKTHCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIK 254

Query: 241 DKDSIT-GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           D D    GN+TRVKVVKNK+A PF+  EFDIMYGEGIS  GE+IDLGV+  I+ KSG+WF
Sbjct: 255 DTDGAVRGNKTRVKVVKNKVAPPFRLAEFDIMYGEGISKVGEIIDLGVEYEIIKKSGSWF 314

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
           S+   +LGQGR+  K  L +N E+ E ++  +R+ 
Sbjct: 315 SYGDTKLGQGRDAVKALLNDNPELYEELDVKIREA 349


>gi|313202686|ref|YP_004041343.1| reca protein [Paludibacter propionicigenes WB4]
 gi|312442002|gb|ADQ78358.1| RecA protein [Paludibacter propionicigenes WB4]
          Length = 340

 Score =  353 bits (905), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 200/327 (61%), Positives = 263/327 (80%), Gaps = 2/327 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
              DK KAL+ A+ +I++ +GKG IM++G      E +  +S+GS+GL++ALG+GG+P+G
Sbjct: 12  PTSDKLKALQLAMDKIEKDHGKGTIMRMGDTK--VEDVAFISTGSIGLNVALGVGGYPRG 69

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R++EIYGPESSGKTTLA+H IA++QK GG  A +DAEHA D  YA KLGV++  LLISQP
Sbjct: 70  RVIEIYGPESSGKTTLAIHAIAEAQKAGGIAAIIDAEHAFDRFYAEKLGVNIDELLISQP 129

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI D L+RS AVDI+VIDSVAALTP+AE+EGDMG+S  G+QARLMSQALRKLT
Sbjct: 130 DNGEQALEIADQLIRSSAVDIVVIDSVAALTPKAELEGDMGDSKMGLQARLMSQALRKLT 189

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           ++I+++    +FINQ+R KIGVMFG+PETTTGGNALKFY+S+RLDIRR+G +KD +   G
Sbjct: 190 ANINKTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASIRLDIRRIGQLKDGEEAIG 249

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           NQTRVKVVKNK+A PF++ EFDIMYGEGIS  GE++DLGV+  I+ KSG+WFS+   +L 
Sbjct: 250 NQTRVKVVKNKVAPPFRKAEFDIMYGEGISKTGEILDLGVEYGIIKKSGSWFSYGETKLA 309

Query: 308 QGRENSKIFLRENIEIAENIESLLRQN 334
           QGR+ SK  +++N E+A  +E+ + + 
Sbjct: 310 QGRDASKALIKDNPELAAELEAKIVEA 336


>gi|223044523|ref|ZP_03614548.1| protein RecA [Staphylococcus capitis SK14]
 gi|222442098|gb|EEE48218.1| protein RecA [Staphylococcus capitis SK14]
          Length = 350

 Score =  353 bits (905), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 198/349 (56%), Positives = 258/349 (73%), Gaps = 2/349 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+  +  +++ +GKGA+M+LG               S+ +D ALG+GG+PKGRI+
Sbjct: 4   ERQKALDTVIKNMEKSFGKGAVMKLGDNKGRKVSSTSSG--SVTVDNALGVGGYPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD +YA+ LGVD+ NL +SQPD G
Sbjct: 62  EIYGPESSGKTTVALHAIAEVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI +  VRSGAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 122 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S    +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T
Sbjct: 182 SKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G R+GQG+
Sbjct: 242 KIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           EN K +L+EN +I E I+  LR+  G+    + +  A         D+ 
Sbjct: 302 ENVKTYLKENPQIKEEIDRKLREKLGIFDGDVEETDAEEEAPKTLFDEE 350


>gi|104773709|ref|YP_618689.1| recombinase A [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|122983993|sp|Q1GB51|RECA_LACDA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|103422790|emb|CAI97429.1| RecA protein (Recombinase A) [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 331

 Score =  353 bits (905), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 190/327 (58%), Positives = 262/327 (80%), Gaps = 2/327 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K  ALEAAL +I++ +GKGA+M++G +  +   I  V SGSL LD ALG+GG+P+
Sbjct: 1   MAKDEKKAALEAALKKIEKNFGKGAVMRMGEK--VDTQISTVPSGSLALDAALGVGGYPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+  L++SQ
Sbjct: 59  GRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDQLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL
Sbjct: 119 PNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + +I+++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK   ++ 
Sbjct: 179 SGTIAKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSTNVI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+     IVDK+GAW+S+ G+++
Sbjct: 239 GNRVKIKVVKNKVAPPFKVAEVDIMYGQGISQSGELLDMAADQDIVDKAGAWYSYHGEKI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333
           GQGREN+K +L E+ +++E+I++ +R+
Sbjct: 299 GQGRENAKKYLEEHPDVSEDIQTQVRK 325


>gi|295426396|ref|ZP_06819046.1| recombination protein A [Lactobacillus amylolyticus DSM 11664]
 gi|295063764|gb|EFG54722.1| recombination protein A [Lactobacillus amylolyticus DSM 11664]
          Length = 370

 Score =  353 bits (905), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 191/357 (53%), Positives = 270/357 (75%), Gaps = 6/357 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K  AL+AAL +I++ +GKGA+M++G +      I  V +GS+ LD ALG+GG+P+
Sbjct: 1   MAKDEKKAALDAALKKIEKNFGKGAVMRMGEKADT--QISTVPTGSIALDAALGVGGYPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQ
Sbjct: 59  GRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL
Sbjct: 119 PNTGEEGLQIADTLISSGAIDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + +IS++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK    + 
Sbjct: 179 SGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDVL 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+     I+DK+G+W+S+K  R+
Sbjct: 239 GNRVKIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKSDRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL----VADSLLQEPAINTKDDADKDDT 359
           GQGREN+K +L ++ +I + IE+ +RQ  G+    +AD    E     ++ A+K + 
Sbjct: 299 GQGRENAKKYLEDHPDIYQEIETQVRQAYGIDEKSIADRENPEKIKEKRETAEKSEE 355


>gi|22538228|ref|NP_689079.1| recombinase A [Streptococcus agalactiae 2603V/R]
 gi|25012085|ref|NP_736480.1| recombinase A [Streptococcus agalactiae NEM316]
 gi|76799557|ref|ZP_00781686.1| recA protein [Streptococcus agalactiae 18RS21]
 gi|77406900|ref|ZP_00783924.1| recA protein [Streptococcus agalactiae H36B]
 gi|77410866|ref|ZP_00787223.1| recA protein [Streptococcus agalactiae CJB111]
 gi|54039033|sp|P65980|RECA_STRA5 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|54041793|sp|P65979|RECA_STRA3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|22535140|gb|AAN00952.1|AE014286_15 recA protein [Streptococcus agalactiae 2603V/R]
 gi|24413629|emb|CAD47706.1| recombination protein RecA [Streptococcus agalactiae NEM316]
 gi|76585086|gb|EAO61715.1| recA protein [Streptococcus agalactiae 18RS21]
 gi|77163084|gb|EAO74038.1| recA protein [Streptococcus agalactiae CJB111]
 gi|77174486|gb|EAO77331.1| recA protein [Streptococcus agalactiae H36B]
 gi|319745988|gb|EFV98270.1| recombination protein A [Streptococcus agalactiae ATCC 13813]
          Length = 379

 Score =  353 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 198/351 (56%), Positives = 267/351 (76%), Gaps = 7/351 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRIV
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIV 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+R    IK     KD   
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRGNTQIKGTGEHKDHNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PF++   +IMYGEGIS  GELI +     I+ K+GAW+S+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFREAFVEIMYGEGISRTGELIKIASDLDIIQKAGAWYSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA-DSLLQEPAINTKDDADK 356
           GQG EN+K +L +N  I + I+  +R + G+   DS +Q   +  K++AD 
Sbjct: 316 GQGSENAKKYLADNPAIFDEIDHKVRVHFGMTEDDSPVQSELVEEKNEADD 366


>gi|299144062|ref|ZP_07037142.1| protein RecA [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518547|gb|EFI42286.1| protein RecA [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 341

 Score =  353 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 210/340 (61%), Positives = 270/340 (79%), Gaps = 2/340 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           ++K KALE A+SQI++ YGKG+IM+LG+   +   IE + +GSL LD++LG+GG PKGRI
Sbjct: 3   IEKKKALELAISQIEKQYGKGSIMKLGADSKL--DIETIPTGSLALDLSLGVGGIPKGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +E+YGPESSGKTTLALH +A+SQK GG  AF+DAEHALD  YA+ LGVD++NL++SQPDT
Sbjct: 61  IEVYGPESSGKTTLALHILAESQKMGGIGAFIDAEHALDPSYAKNLGVDVENLIVSQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + LVRS AVDI+++DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT +
Sbjct: 121 GEQALEIIESLVRSNAVDIVIVDSVAALVPKAEIEGEMGDSHIGLQARLMSQALRKLTGA 180

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I++SK  ++FINQ+R K+GVMFG+PETTTGG ALKFYSS+RL+IR+V ++K  + I GN+
Sbjct: 181 INKSKASVIFINQLREKVGVMFGNPETTTGGRALKFYSSIRLEIRKVENLKLGEEIVGNR 240

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            RVKVVKNK+A PFKQ EFDIMYG+GIS  G LID+GV+  +V KSGAW+S+   RLGQG
Sbjct: 241 VRVKVVKNKVAPPFKQAEFDIMYGKGISKEGTLIDVGVQTDVVTKSGAWYSYGEHRLGQG 300

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
           REN+K FL  N +I+  IE  ++    L     +     N
Sbjct: 301 RENAKEFLLANPDISREIEMKIKDKYNLNKSDNIDSSEEN 340


>gi|22299632|ref|NP_682879.1| recombinase A [Thermosynechococcus elongatus BP-1]
 gi|30173265|sp|Q8DH70|RECA_THEEB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|22295816|dbj|BAC09641.1| recombination protein [Thermosynechococcus elongatus BP-1]
          Length = 355

 Score =  353 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 196/348 (56%), Positives = 257/348 (73%), Gaps = 3/348 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KALE A+SQI+R +GKG+IM+LG   S+   +E +SSG+L LD+ALG GG PKGRI
Sbjct: 11  PEKRKALEFAISQIERSFGKGSIMRLGDATSM--KVETISSGALTLDLALG-GGLPKGRI 67

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALH IA+ QK GG  AFVDAEHALD  YA  L VD++NLL++QPDT
Sbjct: 68  IEIYGPESSGKTTLALHAIAEVQKAGGVAAFVDAEHALDPTYAAALRVDIQNLLVAQPDT 127

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GE ALEI D LVRS AVDIIV+DSVAAL PRAEIEGDMGES  G+QARLMSQALRK+  +
Sbjct: 128 GEAALEIVDQLVRSTAVDIIVVDSVAALVPRAEIEGDMGESHVGLQARLMSQALRKINGN 187

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS++ C ++F+NQ+R KIG+ +G+PETTTGG ALKFY+SVRLDIRRV ++K      G +
Sbjct: 188 ISKTGCTVIFLNQLRQKIGLTYGNPETTTGGVALKFYASVRLDIRRVQTLKKGTEEFGIR 247

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKV KNK+A PF+  EFDI++G+GI+  G ++D+  +  ++ + GAW+S+ G+ L QG
Sbjct: 248 AKVKVAKNKVAPPFRIAEFDIIFGKGIANLGCILDMAEEVGVITRKGAWYSYNGENLAQG 307

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           R+N+  ++ EN   A+ IE  +RQ             A   ++  + +
Sbjct: 308 RDNTINYMEENPSFAQEIEQQVRQRFDQRVALSANTAAYTEEEIGEGE 355


>gi|261879852|ref|ZP_06006279.1| recombination protein A [Prevotella bergensis DSM 17361]
 gi|270333511|gb|EFA44297.1| recombination protein A [Prevotella bergensis DSM 17361]
          Length = 350

 Score =  353 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 193/328 (58%), Positives = 263/328 (80%), Gaps = 2/328 (0%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           +       K KAL+AA+S+I++ +GKGAIM++G +    E ++V+ +GS+GLD+ALG+GG
Sbjct: 15  KNTKEKDAKLKALQAAMSKIEKDFGKGAIMRMGDEN--VEPVDVIPTGSIGLDVALGVGG 72

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
           +P+GR++EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D +YA++LGVD+ NL 
Sbjct: 73  YPRGRVIEIYGPESSGKTTLAIHAIAEAQKLGGIAAFIDAEHAFDRVYAQQLGVDVDNLW 132

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           ISQPD GEQAL+I D L+ S AVDI+VIDSVAALTP+ EI+G+MG+S+ G+QARLMSQAL
Sbjct: 133 ISQPDNGEQALQIADQLISSSAVDILVIDSVAALTPKKEIDGEMGDSMLGLQARLMSQAL 192

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLTS+I+++    +FINQ+R KIG+ FG  ETTTGGNALKFY+SVRLDIR+  S+KD D
Sbjct: 193 RKLTSTIAKTNTCCIFINQLREKIGMTFGPTETTTGGNALKFYASVRLDIRKSTSLKDGD 252

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+ +VKV KNK+A PF + EFDI+YG+GI+  GE++DLGV+  I+ KSG+W+S+  
Sbjct: 253 RVYGNRAKVKVAKNKVAPPFLRAEFDILYGQGINKVGEILDLGVEYDIIKKSGSWYSYND 312

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLL 331
            +L QGR+ S   LR+N E++E +E L+
Sbjct: 313 SKLAQGRDASMAILRDNPELSEELEKLI 340


>gi|24380419|ref|NP_722374.1| recombinase A [Streptococcus mutans UA159]
 gi|290581350|ref|YP_003485742.1| recombination protein [Streptococcus mutans NN2025]
 gi|26007016|sp|P27624|RECA_STRMU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|24378444|gb|AAN59680.1|AE015030_10 recombination protein RecA [Streptococcus mutans UA159]
 gi|254998249|dbj|BAH88850.1| recombination protein [Streptococcus mutans NN2025]
          Length = 383

 Score =  353 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 197/356 (55%), Positives = 270/356 (75%), Gaps = 6/356 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRIV
Sbjct: 18  ERKKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIV 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+R    IK     KDS  
Sbjct: 196 NKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRGNTQIKGTGEQKDSNI 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +I+YGEGIS  GEL+ +     I+ K+GAW+S+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIIYGEGISRTGELVKIASDLGIIQKAGAWYSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           GQG EN+K FL +N EI ++I+  +R   GL+ +   +E   + + + D+    N+
Sbjct: 316 GQGSENAKKFLADNPEIFDDIDHKVRVQYGLIEEDNTEEKQSSKEKETDEKADKNL 371


>gi|308212794|gb|ADO21625.1| RecA [Burkholderia arboris]
 gi|308212796|gb|ADO21626.1| RecA [Burkholderia arboris]
 gi|308212798|gb|ADO21627.1| RecA [Burkholderia arboris]
 gi|308212800|gb|ADO21628.1| RecA [Burkholderia arboris]
          Length = 307

 Score =  353 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 219/308 (71%), Positives = 268/308 (87%), Gaps = 1/308 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+VD+
Sbjct: 60  AELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSVDM 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG
Sbjct: 120 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  F
Sbjct: 180 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 239

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           DI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE
Sbjct: 240 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 299

Query: 329 SLLRQNAG 336
           + +R++ G
Sbjct: 300 NRIRESLG 307


>gi|160896323|ref|YP_001561905.1| recA protein [Delftia acidovorans SPH-1]
 gi|238687174|sp|A9BQB0|RECA_DELAS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|160361907|gb|ABX33520.1| recA protein [Delftia acidovorans SPH-1]
          Length = 367

 Score =  353 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 215/316 (68%), Positives = 271/316 (85%), Gaps = 1/316 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG IM+LG  G   + I+VVS+GSLGLDIALG+GG P+GR++EIYGPESSGKTT
Sbjct: 23  IEKQFGKGTIMRLGE-GEAIQDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTT 81

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGTCAF+DAEHALD+ YA+KLGV+L  +LISQPDTGEQALEI D LVR
Sbjct: 82  LTLQVIAEMQKQGGTCAFIDAEHALDTSYAQKLGVNLNEVLISQPDTGEQALEIVDSLVR 141

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTPRAEIEG+MG+ LPG+QARLMSQALRKLT++I ++ C+++FINQ
Sbjct: 142 SGAVDMIVVDSVAALTPRAEIEGEMGDQLPGLQARLMSQALRKLTATIKKTNCMVIFINQ 201

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK  D   GN+T+VKVVKNK++ P
Sbjct: 202 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPP 261

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FK  EFDI++GEGIS  GE++D+GV A I+DKSGAW+++ G+++GQGR+N++ FLREN  
Sbjct: 262 FKTAEFDILFGEGISREGEILDMGVNAKILDKSGAWYAYNGEKIGQGRDNAREFLRENSG 321

Query: 323 IAENIESLLRQNAGLV 338
           +A  IE+ +R + G+ 
Sbjct: 322 LAVEIENKVRDSLGIA 337


>gi|282860373|ref|ZP_06269441.1| RecA protein [Prevotella bivia JCVIHMP010]
 gi|282586871|gb|EFB92108.1| RecA protein [Prevotella bivia JCVIHMP010]
          Length = 341

 Score =  353 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 198/332 (59%), Positives = 268/332 (80%), Gaps = 3/332 (0%)

Query: 4   RKEMNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
            KE++  + K KAL+AA+++I++ +GKGAIM++G + ++   I+V+ +GSLGLD+ALG+G
Sbjct: 5   EKEISAAEGKLKALQAAMAKIEKDFGKGAIMKMGDKVAV--KIDVIPTGSLGLDVALGVG 62

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G+P+GRIVEI+GPESSGKTTLALH IA++QK  G  AF+DAEHA D  YA  LGVD+ NL
Sbjct: 63  GYPRGRIVEIFGPESSGKTTLALHAIAETQKQNGVAAFIDAEHAFDPTYAAALGVDINNL 122

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
            ISQPD GEQAL+I D L+ S AVD++V+DSVAALTP+ EIEG+MG+S+ G+ ARLMSQA
Sbjct: 123 WISQPDNGEQALQIADQLISSSAVDLLVVDSVAALTPKKEIEGEMGDSVVGLHARLMSQA 182

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           LRKLTS+I+++    +FINQ+R KIGVMFGSPETTTGGNALKFY+SVR+D+R+   IK+ 
Sbjct: 183 LRKLTSTIAKTNTCCIFINQLREKIGVMFGSPETTTGGNALKFYASVRVDVRKSTQIKEG 242

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           + I GN T+VKVVKNK+A PF++ EFDI++G+GIS  GE+IDLGV+  I+ KSG+WFS+ 
Sbjct: 243 EKILGNLTKVKVVKNKVAPPFRKCEFDIIFGQGISKLGEIIDLGVEYDIIKKSGSWFSYG 302

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
             +L QGR+  K  L++N E+ E +E L+++ 
Sbjct: 303 DTKLAQGRDGVKAMLKDNPELTEELEGLIKEA 334


>gi|120613271|ref|YP_972949.1| recombination protein RecA [Acidovorax citrulli AAC00-1]
 gi|120591735|gb|ABM35175.1| recA protein [Acidovorax citrulli AAC00-1]
          Length = 354

 Score =  353 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 214/315 (67%), Positives = 270/315 (85%), Gaps = 1/315 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG IM+LG  G   E I+VVS+GSLGLD+ALG+GG P+GR++EIYGPESSGKTT
Sbjct: 25  IEKQFGKGTIMRLGE-GEAIEDIQVVSTGSLGLDVALGVGGLPRGRVIEIYGPESSGKTT 83

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK  GTCAFVDAEHALD  YA+KLGV + +LLISQPDTGEQALEI D LVR
Sbjct: 84  LTLQVIAEMQKQNGTCAFVDAEHALDIQYAQKLGVHVPDLLISQPDTGEQALEIVDSLVR 143

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AEIEG+MG++LPG+QARLMSQALRKLT++I ++ C+++FINQ
Sbjct: 144 SGAVDLIVVDSVAALTPKAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQ 203

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK  D   GN+T+VKVVKNK++ P
Sbjct: 204 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPP 263

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FK  EFDI++GEGIS  GE+ID+GV A I++KSGAW+++ G+++GQGR+N++ FLREN +
Sbjct: 264 FKTAEFDILFGEGISREGEIIDMGVNARIIEKSGAWYAYNGEKIGQGRDNAREFLRENAD 323

Query: 323 IAENIESLLRQNAGL 337
           +A  IE+ +R   G+
Sbjct: 324 LAREIENKVRDGLGV 338


>gi|27467881|ref|NP_764518.1| recombinase A [Staphylococcus epidermidis ATCC 12228]
 gi|57866790|ref|YP_188434.1| recombinase A [Staphylococcus epidermidis RP62A]
 gi|242242568|ref|ZP_04797013.1| recombination protein RecA [Staphylococcus epidermidis W23144]
 gi|251810716|ref|ZP_04825189.1| recombination protein RecA [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876283|ref|ZP_06285150.1| RecA protein [Staphylococcus epidermidis SK135]
 gi|293366751|ref|ZP_06613427.1| recombination protein A [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|30173244|sp|Q8CPF4|RECA_STAES RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|71152038|sp|Q5HPQ6|RECA_STAEQ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|27315426|gb|AAO04560.1|AE016747_57 RecA protein [Staphylococcus epidermidis ATCC 12228]
 gi|57637448|gb|AAW54236.1| recA protein [Staphylococcus epidermidis RP62A]
 gi|242233995|gb|EES36307.1| recombination protein RecA [Staphylococcus epidermidis W23144]
 gi|251805876|gb|EES58533.1| recombination protein RecA [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295308|gb|EFA87835.1| RecA protein [Staphylococcus epidermidis SK135]
 gi|291319052|gb|EFE59422.1| recombination protein A [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|319401426|gb|EFV89636.1| protein RecA [Staphylococcus epidermidis FRI909]
 gi|329728027|gb|EGG64471.1| RecA protein [Staphylococcus epidermidis VCU144]
 gi|329736291|gb|EGG72563.1| RecA protein [Staphylococcus epidermidis VCU028]
 gi|329736622|gb|EGG72888.1| RecA protein [Staphylococcus epidermidis VCU045]
          Length = 349

 Score =  353 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 197/348 (56%), Positives = 258/348 (74%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+  +  +++ +GKGA+M+LG               S+ +D ALG+GG+PKGRI+
Sbjct: 4   ERQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSTSSG--SVTVDNALGVGGYPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD +YA+ LGVD+ NL +SQPD G
Sbjct: 62  EIYGPESSGKTTVALHAIAEVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI +  VRSGAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 122 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S    +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T
Sbjct: 182 SKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G R+GQG+
Sbjct: 242 KIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           EN K +L+EN +I E I+  LR+  G+    + +    +       D+
Sbjct: 302 ENVKNYLKENPQIKEEIDRKLREKLGIFDGDVDENENEDDSPKTLFDE 349


>gi|320355319|ref|YP_004196658.1| RecA protein [Desulfobulbus propionicus DSM 2032]
 gi|320123821|gb|ADW19367.1| RecA protein [Desulfobulbus propionicus DSM 2032]
          Length = 344

 Score =  353 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 197/340 (57%), Positives = 267/340 (78%), Gaps = 2/340 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N   + K+++ A++QIQR +GKGAIM+LGS     E I V+ +G L +D+ALG+GG P+G
Sbjct: 7   NSEGRLKSVDNAITQIQRQFGKGAIMRLGSTER--ENIPVIPTGILSVDLALGVGGLPRG 64

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R+ EIYGPE+SGKTTLALH IA++Q+ GG  AF+DAEHALD+ YA +LGVD+ NLLISQP
Sbjct: 65  RVTEIYGPEASGKTTLALHVIAEAQRRGGNAAFIDAEHALDTSYAERLGVDVDNLLISQP 124

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI ++L+RSG +D++V+DSVAAL PRAEI+G++G+   G+QARLMS A+RK T
Sbjct: 125 DFGEQALEIAEILIRSGGIDVVVVDSVAALVPRAEIDGNVGDQHVGLQARLMSHAMRKFT 184

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
             ++R+  +L+FINQ+RMKIGVMFG+PETTTGGNALKFYSS+R+DIR+   IK+     G
Sbjct: 185 GVLNRTNTVLIFINQIRMKIGVMFGNPETTTGGNALKFYSSIRIDIRKTTQIKEGQDAIG 244

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N T++K+VKNK+A PFKQ + DI+YGEGIS  G+++DLGV   IVDKSGAW++++ +R+G
Sbjct: 245 NLTKIKIVKNKVAPPFKQADVDIIYGEGISRTGDVLDLGVAQGIVDKSGAWYAYQDERIG 304

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           QGREN+K +L+E+ +   +IE  LR   G+  D+     A
Sbjct: 305 QGRENAKKYLKEHPDTLADIERKLRLAFGMPVDAEPPASA 344


>gi|261854981|ref|YP_003262264.1| RecA protein [Halothiobacillus neapolitanus c2]
 gi|261835450|gb|ACX95217.1| RecA protein [Halothiobacillus neapolitanus c2]
          Length = 349

 Score =  353 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 214/348 (61%), Positives = 276/348 (79%), Gaps = 2/348 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL AALSQI+R +GKGA+M++     +   + VVS+GS+ LD ALGIGG P+GR+V
Sbjct: 4   NRKKALTAALSQIERQFGKGAVMRMNDTAGV--DVPVVSTGSIALDAALGIGGLPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IAQ+QKTGG CAFVDAEHALD  YA+KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQVIAQAQKTGGVCAFVDAEHALDPTYAQKLGVNVDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSGAVD++V+DSVAAL P+AEIEG+MG++  G+QARLMSQALRKLT +I
Sbjct: 122 EQALEITDMLVRSGAVDVVVVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            R+ C+++FINQ+RMKIGV +GSPETTTGGNALKFY+SVRLDIRRVG++K  + I GNQT
Sbjct: 182 KRTNCMVIFINQIRMKIGVSYGSPETTTGGNALKFYASVRLDIRRVGAVKKGEEIIGNQT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNKMA PFK V+ DI+YGEGIS   ELID+     ++ K+GAW+S    RLGQG+
Sbjct: 242 RIKVVKNKMAPPFKVVDVDILYGEGISRLMELIDMATTHGLIQKAGAWYSCGDIRLGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           +N++ +  E+ E+A++IE+ LR +       +    + + +  A  +D
Sbjct: 302 DNARQYFVEHPELADDIEAKLRASMLASTGKVAVRASEDDESSAVLED 349


>gi|157326987|gb|ABV44606.1| RecA [Burkholderia multivorans]
          Length = 307

 Score =  353 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 218/308 (70%), Positives = 269/308 (87%), Gaps = 1/308 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVRSG++D+
Sbjct: 60  AELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRSGSIDM 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG
Sbjct: 120 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  F
Sbjct: 180 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 239

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           DI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE
Sbjct: 240 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 299

Query: 329 SLLRQNAG 336
           + +R++ G
Sbjct: 300 NRIRESLG 307


>gi|294788715|ref|ZP_06753956.1| protein RecA [Simonsiella muelleri ATCC 29453]
 gi|294483197|gb|EFG30883.1| protein RecA [Simonsiella muelleri ATCC 29453]
          Length = 363

 Score =  352 bits (904), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 216/364 (59%), Positives = 283/364 (77%), Gaps = 8/364 (2%)

Query: 1   MDYRKEMNIV-----DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGL 55
           M  + E +       +KS+AL AAL+QI++ +GKGA+M++       + ++V+S+GSL L
Sbjct: 1   MASKSEKDNAKNSNNEKSQALAAALAQIEKNFGKGAVMKM-DGSHQEDNLQVISTGSLTL 59

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GRIVEI+GPESSGKTTL L TIAQ QK GGTCAF+DAE+A D +YARKL
Sbjct: 60  DLALGVGGLPRGRIVEIFGPESSGKTTLCLETIAQCQKNGGTCAFIDAENAFDPVYARKL 119

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GV +++LL+SQPDTGEQALEI DMLVRSG VD++VIDSVAAL P+AEIEGDMG+S  G+Q
Sbjct: 120 GVKVEDLLVSQPDTGEQALEICDMLVRSGGVDMVVIDSVAALVPKAEIEGDMGDSHVGLQ 179

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           ARLMSQALRKLT SI ++  ++VFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIR 
Sbjct: 180 ARLMSQALRKLTGSIKKTNTLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRG 239

Query: 236 VGSI--KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVD 293
              I  K+ +   G +T+VKV+KNK+A PF+  EFDI+YGEG+S+ GEL+DLGVK  ++ 
Sbjct: 240 TTQIKGKEGEEPIGKETKVKVIKNKVAPPFRTAEFDILYGEGVSYEGELVDLGVKTDVIQ 299

Query: 294 KSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           KSGAWFS+ G ++GQG++N +I+L+EN E+A  I+  +R ++GL     +  P  N    
Sbjct: 300 KSGAWFSYNGAKIGQGKDNVRIWLKENPEVAAEIDQKIRSHSGLDDLIEVGTPEDNADGV 359

Query: 354 ADKD 357
             ++
Sbjct: 360 QPEE 363


>gi|238018967|ref|ZP_04599393.1| hypothetical protein VEIDISOL_00827 [Veillonella dispar ATCC 17748]
 gi|237864451|gb|EEP65741.1| hypothetical protein VEIDISOL_00827 [Veillonella dispar ATCC 17748]
          Length = 346

 Score =  352 bits (904), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 204/346 (58%), Positives = 272/346 (78%), Gaps = 1/346 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M +  +  AL+ AL QI++ +GKGAIM+LG        +EV+SSGSL +DIA+G+GGFP+
Sbjct: 1   MAVDGRQAALDNALKQIEKDFGKGAIMRLGEAADRMN-VEVISSGSLAIDIAVGVGGFPR 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++EIYGPESSGKTT+ALH +A++QK GG  AF+DAEHA+D +YAR LGVD+ NLLISQ
Sbjct: 60  GRVIEIYGPESSGKTTVALHAVAEAQKQGGIAAFIDAEHAMDPVYARNLGVDINNLLISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT+ LVRSGAVDI+V+DSVAAL P+AEI+G+MG++  G+QARLMS+ALRKL
Sbjct: 120 PDNGEQALEITEALVRSGAVDIVVVDSVAALVPKAEIDGEMGDAHVGLQARLMSKALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T  IS+SK +++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+R+   IK  +   
Sbjct: 180 TGIISKSKTVVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRKGELIKANNENV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T+VKVVKNK+A PFK  EFD+MYGEGIS  G LID+G    I++KSGAW+S+ G+R+
Sbjct: 240 GARTKVKVVKNKVAPPFKTAEFDLMYGEGISKAGTLIDIGTNMEIINKSGAWYSYNGERM 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GQG+E +K +L +N +IA+ I+ ++R    +  + +       T++
Sbjct: 300 GQGKEAAKQYLLDNPQIADEIDRIIRDTLAVGTEEIDVIGEEVTEE 345


>gi|296837405|gb|ADH59561.1| DNA recombinase [Burkholderia cenocepacia]
          Length = 307

 Score =  352 bits (904), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 218/308 (70%), Positives = 268/308 (87%), Gaps = 1/308 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI
Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  
Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  I
Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299

Query: 328 ESLLRQNA 335
           E+ +R++ 
Sbjct: 300 ENRIRESL 307


>gi|31540535|gb|AAP49230.1| RecA [Mycobacterium abscessus ATCC 19977]
          Length = 306

 Score =  352 bits (904), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 198/304 (65%), Positives = 254/304 (83%), Gaps = 2/304 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE AL+QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 5   PDREKALELALAQIDKSFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 63  IEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 123 GEQALEIADMLVRSGAIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD     GN+
Sbjct: 183 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG
Sbjct: 243 TRVKVVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQG 302

Query: 310 RENS 313
           +EN+
Sbjct: 303 KENA 306


>gi|257066125|ref|YP_003152381.1| recA protein [Anaerococcus prevotii DSM 20548]
 gi|256798005|gb|ACV28660.1| recA protein [Anaerococcus prevotii DSM 20548]
          Length = 347

 Score =  352 bits (904), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 204/324 (62%), Positives = 257/324 (79%), Gaps = 2/324 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KAL+ A   I++ YGKGAIM++G    +   +  + +G++ LDIALGIGG P+GR+V
Sbjct: 4   DKQKALDQAFKNIEKKYGKGAIMKMGEAPRV--SVSAIPTGAVNLDIALGIGGIPRGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTLALH +A+ QK   TCAF+DAEHALD+ YA  LGVD+ NL++SQPDTG
Sbjct: 62  EIFGPESSGKTTLALHIVAEDQKQDQTCAFIDAEHALDAEYAENLGVDIDNLILSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ L+I + LVRSGAVD+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALR+LT  I
Sbjct: 122 EQGLDIAESLVRSGAVDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRRLTGVI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++S   ++FINQ+R K+GVMFGSPETT GG ALKFYSSVRLDIRR+ +I   D+  G++T
Sbjct: 182 AKSNTTVIFINQLREKVGVMFGSPETTPGGRALKFYSSVRLDIRRIKTITQGDNSIGSRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK VEFDIMYG+GIS  G L+D  V   IVDK+G+WFS+K ++LGQGR
Sbjct: 242 RVKVVKNKVAPPFKVVEFDIMYGKGISKSGVLLDTAVDMDIVDKAGSWFSYKDEKLGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQN 334
           EN K  L EN E+   I++ +R++
Sbjct: 302 ENVKDLLEENPELMAQIDAEVRKS 325


>gi|269925195|ref|YP_003321818.1| recA protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269788855|gb|ACZ40996.1| recA protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 344

 Score =  352 bits (904), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 205/330 (62%), Positives = 266/330 (80%), Gaps = 3/330 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           + D+ KALE+A++QI+R +G G+IM++ G +  +   IE + +GS+ LDIALG+GG P+G
Sbjct: 1   MSDRDKALESAIAQIERAFGTGSIMRMTGDRAKM--QIEAIPTGSIALDIALGVGGVPRG 58

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTLA H IA++QK GGT A++DAEHA D  YA K GV L +LLISQP
Sbjct: 59  RIVEIYGPESSGKTTLAQHIIAEAQKLGGTAAYIDAEHAFDPSYAEKCGVQLSDLLISQP 118

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL 
Sbjct: 119 DTGEQALEIAETLVRSGAVDVVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLA 178

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++++SK +L+FINQ+RMKIGVMFG+PETT+GGNALKFY+SVRL+IR+V SIK    + G
Sbjct: 179 GAVNKSKTVLIFINQIRMKIGVMFGNPETTSGGNALKFYASVRLEIRKVESIKQGQDVVG 238

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+ RVKV+KNK+ASP++  EFDIM+ EGIS  G LID+G+   ++ KSG++     +RLG
Sbjct: 239 NRVRVKVIKNKVASPYRTAEFDIMFNEGISKEGNLIDVGLSVGVLRKSGSFIYLDDERLG 298

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGL 337
           QGREN+K +LR+N ++AE IES ++    L
Sbjct: 299 QGRENAKEYLRQNPDVAEEIESRIKAAGNL 328


>gi|303238099|ref|ZP_07324639.1| RecA protein [Prevotella disiens FB035-09AN]
 gi|302481734|gb|EFL44789.1| RecA protein [Prevotella disiens FB035-09AN]
          Length = 342

 Score =  352 bits (904), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 210/334 (62%), Positives = 278/334 (83%), Gaps = 3/334 (0%)

Query: 2   DYRKEMNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           + ++E++  + K KAL+AA+S+I++ +GKG+IM++G +    E +EV+ +GS+GLD+ALG
Sbjct: 4   ENKEELSAGEGKLKALQAAMSKIEKDFGKGSIMRMGDEQ--IENVEVIPTGSIGLDVALG 61

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG+P+GRI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA+KLGVD+ 
Sbjct: 62  VGGYPRGRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAQKLGVDVD 121

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL ISQPD GEQALEI D L+RS A+DI+V+DSVAALTP+ EIEGDMG+S  G+QARLMS
Sbjct: 122 NLWISQPDNGEQALEIADQLIRSSAIDILVVDSVAALTPKKEIEGDMGDSNVGLQARLMS 181

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLTS+IS++    +FINQ+R KIGVMFG+PETTTGGNALKFYSSVRLDIRRV S+K
Sbjct: 182 QALRKLTSTISKTNTCCIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRVTSVK 241

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D D+I GNQ RVKVVKNK+A PF++VEF+I++GEGIS  GE++DLGV+ +I+ KSG+WFS
Sbjct: 242 DGDNIIGNQVRVKVVKNKVAPPFRKVEFEILFGEGISKVGEILDLGVEYNIIQKSGSWFS 301

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
           + G +L QGR+ +K  L++N E+ E +  L+ + 
Sbjct: 302 YNGTKLAQGRDATKTMLKDNPELVEEVSQLINEA 335


>gi|326798002|ref|YP_004315821.1| protein recA [Sphingobacterium sp. 21]
 gi|326548766|gb|ADZ77151.1| Protein recA [Sphingobacterium sp. 21]
          Length = 338

 Score =  352 bits (904), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 213/343 (62%), Positives = 271/343 (79%), Gaps = 5/343 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+  DK KAL+  L ++++ YGKG IM+LG   S  E I+ +S+GSLGLDIALGIGG PK
Sbjct: 1   MSNQDKLKALQLTLDKLEKSYGKGTIMKLGD--SAVEPIDSISTGSLGLDIALGIGGVPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++EIYGPESSGKTTLA H IA++QK GG  A +DAEHA D  YARKLGVD++NLLISQ
Sbjct: 59  GRVIEIYGPESSGKTTLATHIIAEAQKKGGIAAIIDAEHAFDKYYARKLGVDIENLLISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI D L+RSGA+D+IVIDSVAAL P+ EIEG+MG+S  G+QARLMSQALRKL
Sbjct: 119 PDNGEQALEIADNLIRSGAIDVIVIDSVAALVPKGEIEGEMGDSKMGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T +IS++ C  +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IKD D ++
Sbjct: 179 TGTISKTNCCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRTSQIKDADEVS 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ +VK+VKNK+A PF+  EFDIM+GEGIS  GE+IDLGV  +++ KSG+WFS+   +L
Sbjct: 239 GNRVKVKIVKNKVAPPFRVAEFDIMFGEGISKVGEIIDLGVDFNVIKKSGSWFSYGDTKL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
           GQGR+  K  L +N ++ E +E+ +++   +V+   L+E   N
Sbjct: 299 GQGRDAVKNLLLDNPDLMEELEAKIKE---MVSPEKLEEHNAN 338


>gi|304436681|ref|ZP_07396650.1| recombination protein A [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304370377|gb|EFM24033.1| recombination protein A [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 379

 Score =  352 bits (904), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 203/326 (62%), Positives = 255/326 (78%), Gaps = 1/326 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           + + +ALE AL  I++ +GKGAIM+LG   +    +EV+S+G L LDIALG+GG P+GRI
Sbjct: 15  MTREEALENALQNIEKAHGKGAIMRLGEAKANMN-VEVISTGILPLDIALGVGGIPRGRI 73

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +E++GPESSGKTT+ LH IA++QK GG  AF+DAEHALD  YARKLGV+++ LLISQPDT
Sbjct: 74  IEVFGPESSGKTTVTLHMIAEAQKAGGIAAFIDAEHALDPEYARKLGVNIEELLISQPDT 133

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LV S A+DIIV+DSVAAL P++EIEGDMG S+ G+QARLMSQA+RKLT  
Sbjct: 134 GEQALEIVDALVHSAAIDIIVVDSVAALVPKSEIEGDMGTSVVGLQARLMSQAMRKLTGI 193

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+++   VFINQ+R KIGV +G+PE TTGG ALKFY+SVR+D+RR  SIK      GN+
Sbjct: 194 ISKTRTAAVFINQLREKIGVTYGNPEVTTGGRALKFYASVRIDVRRADSIKQGTESLGNR 253

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TR K+VKNK+A PFK  EFDIMYGEG+S  G +ID+GV+  IVDKSGAWFS++G RLGQG
Sbjct: 254 TRAKIVKNKVAPPFKTAEFDIMYGEGVSRLGSIIDMGVELDIVDKSGAWFSYEGTRLGQG 313

Query: 310 RENSKIFLRENIEIAENIESLLRQNA 335
           +EN+K  L E  E+   IE  +R   
Sbjct: 314 KENAKATLEEKPEMIAEIEEKIRTKL 339


>gi|254468858|ref|ZP_05082264.1| protein RecA [beta proteobacterium KB13]
 gi|207087668|gb|EDZ64951.1| protein RecA [beta proteobacterium KB13]
          Length = 350

 Score =  352 bits (904), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 225/349 (64%), Positives = 288/349 (82%), Gaps = 3/349 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALEAA++QI++ YGKG++M++     I E IE +S+GSLGLDIALGIGG PKGRIV
Sbjct: 4   NKQKALEAAMAQIEKQYGKGSVMKM-DGTEIDESIEAISTGSLGLDIALGIGGLPKGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKT+L L  IA +QK GGT AF+DAEHALD+ YA KLGV+L +LLISQPDTG
Sbjct: 63  EIYGPESSGKTSLTLSVIAAAQKAGGTAAFIDAEHALDTQYAAKLGVNLTDLLISQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEITDMLVRSG+VD++V+DSVAALTPRAEIEGDMG+S  G+QARLMSQALRKLT +I
Sbjct: 123 EQALEITDMLVRSGSVDVVVVDSVAALTPRAEIEGDMGDSHMGLQARLMSQALRKLTGNI 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ++  +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK  D + G +T
Sbjct: 183 KKTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKKGDEVVGAET 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EFD+MYGEGIS  GE+I+ GVK  +++K+GAW+S  G+++GQG+
Sbjct: 243 RVKVVKNKVAPPFRQAEFDVMYGEGISLEGEIIEQGVKLKLIEKAGAWYSHNGEKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           +N + +L++N +I++ +E  +R NA L    ++ E    T +DA  +D 
Sbjct: 303 DNVREYLKQNPDISKALEDQIRANANLANSKMIVEN--QTDEDAVDEDA 349


>gi|31540543|gb|AAP49234.1| RecA [Mycobacterium chelonae]
 gi|31540545|gb|AAP49235.1| RecA [Mycobacterium chelonae]
          Length = 307

 Score =  352 bits (904), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 197/305 (64%), Positives = 253/305 (82%), Gaps = 2/305 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE AL+QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 5   PDREKALELALAQIDKSFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 63  VEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+ ++VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 123 GEQALEIADMLVRSGAISLLVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD     GN+
Sbjct: 183 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG
Sbjct: 243 TRVKVVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQG 302

Query: 310 RENSK 314
           +EN++
Sbjct: 303 KENAR 307


>gi|296837375|gb|ADH59546.1| DNA recombinase [Burkholderia contaminans]
 gi|296837435|gb|ADH59576.1| DNA recombinase [Burkholderia contaminans]
          Length = 307

 Score =  352 bits (904), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 218/308 (70%), Positives = 268/308 (87%), Gaps = 1/308 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI
Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  
Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  I
Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299

Query: 328 ESLLRQNA 335
           E+ +R++ 
Sbjct: 300 ENRIRESL 307


>gi|296803030|gb|ADH51591.1| DNA recombinase [Burkholderia contaminans]
          Length = 307

 Score =  352 bits (904), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 218/308 (70%), Positives = 268/308 (87%), Gaps = 1/308 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI
Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  
Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  I
Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299

Query: 328 ESLLRQNA 335
           E+ +R++ 
Sbjct: 300 ENRIRESL 307


>gi|314933464|ref|ZP_07840829.1| protein RecA [Staphylococcus caprae C87]
 gi|313653614|gb|EFS17371.1| protein RecA [Staphylococcus caprae C87]
          Length = 350

 Score =  352 bits (904), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 199/349 (57%), Positives = 259/349 (74%), Gaps = 2/349 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+  +  +++ +GKGA+M+LG               S+ +D ALG+GG+PKGRI+
Sbjct: 4   ERQKALDTVIKNMEKSFGKGAVMKLGDNKGRKVSSTSSG--SVTVDNALGVGGYPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD +YA+ LGVD+ NL +SQPD G
Sbjct: 62  EIYGPESSGKTTVALHAIAEVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI +  VRSGAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +I
Sbjct: 122 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S    +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T
Sbjct: 182 SKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+ VE DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G R+GQG+
Sbjct: 242 KIKVVKNKVAPPFRVVEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGK 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           EN K +L+EN +I E I+  LR+  G+    + +  A         D+ 
Sbjct: 302 ENVKTYLKENPQIKEEIDRKLREKLGIFDGDVEETDAEEEAPKTLFDEE 350


>gi|296803084|gb|ADH51618.1| DNA recombinase [Burkholderia cepacia]
          Length = 307

 Score =  352 bits (904), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 217/308 (70%), Positives = 268/308 (87%), Gaps = 1/308 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+
Sbjct: 60  AELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG
Sbjct: 120 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  F
Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 239

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           DI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE
Sbjct: 240 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 299

Query: 329 SLLRQNAG 336
           + +R++ G
Sbjct: 300 NRIRESLG 307


>gi|21242489|ref|NP_642071.1| recombinase A [Xanthomonas axonopodis pv. citri str. 306]
 gi|59800177|sp|P0A0W4|RECA_XANAC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|59800178|sp|P0A0W5|RECA_XANCI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|2253314|gb|AAB63678.1| RecA [Xanthomonas citri]
 gi|21107938|gb|AAM36607.1| RecA protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 344

 Score =  352 bits (904), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 223/349 (63%), Positives = 282/349 (80%), Gaps = 10/349 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AALSQI++ +GKG++M++G    + E +EV+ +GSL LDIALGIGG PKGR+V
Sbjct: 4   NKKRALSAALSQIEKQFGKGSVMRMGD--RVIEAVEVIPTGSLMLDIALGIGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESSGKTTLTLQAIAECQKNGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSG+VDI+V+DSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSGSVDIVVVDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  ++VFINQ+RMKIGVM    SPE TTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 182 KRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELID+GV+A +VDK+GAW+S+  +R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVDKAGAWYSYGDERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           G++N++ +LR+N ++A  +E+ LR+           E      DD DK+
Sbjct: 302 GKDNARTYLRDNSQVATRLEAELREKF------QPAEAPREAGDDEDKE 344


>gi|296803104|gb|ADH51628.1| DNA recombinase [Burkholderia cenocepacia]
          Length = 308

 Score =  352 bits (904), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 218/309 (70%), Positives = 269/309 (87%), Gaps = 1/309 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQNAGLV 338
            +R++ G+V
Sbjct: 300 RIRESLGVV 308


>gi|315612452|ref|ZP_07887365.1| recombination protein A [Streptococcus sanguinis ATCC 49296]
 gi|315315433|gb|EFU63472.1| recombination protein A [Streptococcus sanguinis ATCC 49296]
          Length = 383

 Score =  352 bits (904), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 198/354 (55%), Positives = 264/354 (74%), Gaps = 6/354 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG GG+PKGRI
Sbjct: 18  ADREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRI 75

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+
Sbjct: 76  IEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDS 135

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +S
Sbjct: 136 GEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGAS 195

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSI 245
           I+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KD+ 
Sbjct: 196 INKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIKGTGDQKDTN 255

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAW+S+KG++
Sbjct: 256 VGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIQKAGAWYSYKGEK 315

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           +GQG EN+K +L ++ EI + I+  +R   GL+ D         T+D A   + 
Sbjct: 316 IGQGSENAKKYLADHPEIFDEIDHQVRVQYGLIEDEEGTTSTSATEDLAPNQEV 369


>gi|284050628|ref|ZP_06380838.1| recombinase A [Arthrospira platensis str. Paraca]
          Length = 404

 Score =  352 bits (904), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 199/370 (53%), Positives = 264/370 (71%), Gaps = 12/370 (3%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M  + E    +K KAL + L+QI++ +GKG+I++LG    +   +E +SSG+L LD+ALG
Sbjct: 40  MASKTE--NSEKQKALNSVLNQIEKSFGKGSIVRLGDSARM--KVETISSGALTLDLALG 95

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG P+GR++EIYGPESSGKTTLALH IA+ QKTGG  AFVDAEHALD  YA  LGVD++
Sbjct: 96  -GGLPRGRVIEIYGPESSGKTTLALHAIAEIQKTGGIAAFVDAEHALDPTYAAALGVDIE 154

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NLL+SQPDTGE ALEI D LVRS AVDI+V+DSVAAL PRAEIEGDMG+S  G+QARLMS
Sbjct: 155 NLLVSQPDTGEMALEIVDQLVRSVAVDIVVVDSVAALVPRAEIEGDMGDSHMGLQARLMS 214

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRK+T +I +S C ++F+NQ+R KIG+++G+PETTTGGNALKFY+SVRLDIRR  ++K
Sbjct: 215 QALRKITGNIGKSGCTVIFLNQLRQKIGIVYGNPETTTGGNALKFYASVRLDIRRTQTLK 274

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
                 G + +VKV KNK+A PF+  EFDI++G+GIS  G LIDL  +  ++ + GAW+S
Sbjct: 275 KGSDEYGIRAKVKVAKNKVAPPFRIAEFDIIFGQGISTIGCLIDLAEETGVIKRKGAWYS 334

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA-------DSLLQEPAINTKDD 353
           +  + +GQGR+ +  +++EN    E I+  +R      A         L   P  +  D 
Sbjct: 335 YNNENIGQGRDRTITYMQENPAFTEEIDKRVRAALAGGAVVSATSVVKLDDNPDTDDHDV 394

Query: 354 ADKDDTDNVE 363
            D D+  + E
Sbjct: 395 EDIDENTDEE 404


>gi|322386551|ref|ZP_08060178.1| recombination protein A [Streptococcus cristatus ATCC 51100]
 gi|321269470|gb|EFX52403.1| recombination protein A [Streptococcus cristatus ATCC 51100]
          Length = 382

 Score =  352 bits (904), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 194/346 (56%), Positives = 262/346 (75%), Gaps = 6/346 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGAIM+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++VIDSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD----KDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KD+  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDAKDTNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GELI +     I+ K+GAW+S+  +++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GQG EN+K +L ++ E+ + I+  +R + GL+ D    E      +
Sbjct: 316 GQGSENAKKYLADHPEVFDEIDRQVRVHYGLIEDDEPAEAVKGKVE 361


>gi|296837443|gb|ADH59580.1| DNA recombinase [Burkholderia contaminans]
          Length = 308

 Score =  352 bits (903), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 218/309 (70%), Positives = 269/309 (87%), Gaps = 1/309 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQNAGLV 338
            +R++ G+V
Sbjct: 300 RIRESLGVV 308


>gi|162454236|ref|YP_001616603.1| RecA protein [Sorangium cellulosum 'So ce 56']
 gi|161164818|emb|CAN96123.1| RecA protein [Sorangium cellulosum 'So ce 56']
          Length = 393

 Score =  352 bits (903), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 220/338 (65%), Positives = 279/338 (82%), Gaps = 6/338 (1%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N   KS ALE A++ +++ YGKGAIM+L    ++ + +  V++GSLGLDIALGIGG+P
Sbjct: 4   EKNTKQKSAALELAIASVEKEYGKGAIMRLKDGQTLHDEVAAVATGSLGLDIALGIGGYP 63

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRIVE+YGPESSGKTTL LH IA  Q+ GGT AF+DAEHALD  YA+KLGV    LLIS
Sbjct: 64  RGRIVEVYGPESSGKTTLTLHAIAAVQRAGGTAAFIDAEHALDVNYAKKLGVKTDELLIS 123

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI DMLVRS AVDIIV+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRK
Sbjct: 124 QPDYGEQALEIADMLVRSNAVDIIVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRK 183

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD---- 241
           LT + SRS+C+L+FINQ+RMKIGVMFGSPETT+GGNALKFY+SVRLDIRR+G+IK+    
Sbjct: 184 LTGTTSRSQCLLMFINQIRMKIGVMFGSPETTSGGNALKFYASVRLDIRRIGAIKEAAAG 243

Query: 242 --KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
             + ++ GN+TRVKVVKNKMA PF++VEFDI+YG+GIS  G++IDL  +ASI++KSG+WF
Sbjct: 244 GKEPAVVGNRTRVKVVKNKMAPPFREVEFDILYGQGISHSGDVIDLATEASIIEKSGSWF 303

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           SF+G+R+GQGREN++ +L ++  + + IES++    G+
Sbjct: 304 SFQGERIGQGRENARTYLEQHPAVLDKIESMVLAKHGI 341


>gi|319955955|ref|YP_004167218.1| reca protein [Nitratifractor salsuginis DSM 16511]
 gi|319418359|gb|ADV45469.1| RecA protein [Nitratifractor salsuginis DSM 16511]
          Length = 347

 Score =  352 bits (903), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 209/343 (60%), Positives = 268/343 (78%), Gaps = 3/343 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+ A+ QI + +GKG +M+LG +    E I  +S+GSLGLD+ALGIGG P+GRIVE
Sbjct: 7   KQKALDMAIKQIDKTFGKGTLMRLGDKE--IEPIAAISTGSLGLDMALGIGGVPQGRIVE 64

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA +QK G  CAF+DAEHALD +YA+ LGVD+ NLL+SQPD GE
Sbjct: 65  IYGPESSGKTTLALQTIASAQKEGKVCAFIDAEHALDVLYAKNLGVDIDNLLVSQPDFGE 124

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL+I + + RSGAVD++VIDSVAALTP++EIEGDMG++  G+QARLMSQALRKLT  + 
Sbjct: 125 QALDILETIARSGAVDLVVIDSVAALTPKSEIEGDMGDTHVGLQARLMSQALRKLTGILH 184

Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +    ++FINQ+RMKIG M +GSPETTTGGNALKFY+SVR+D+RR+ ++K  +S  GN+ 
Sbjct: 185 KMNTTVIFINQIRMKIGTMGYGSPETTTGGNALKFYASVRIDVRRIATLKQGESQIGNRV 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           + KVVKNK+A PF+Q EFDIM+GEGIS  GELID GVK  I+DKSGAWFS+  Q+LGQG+
Sbjct: 245 KAKVVKNKVAPPFRQAEFDIMFGEGISQEGELIDYGVKLDIIDKSGAWFSYGAQKLGQGK 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           EN+K  L+EN E+   IE  +++  G      + E  I + ++
Sbjct: 305 ENAKQTLKENPELRAEIEHKIKEALGFGEGLAMDEKEIASTEE 347


>gi|296802984|gb|ADH51568.1| DNA recombinase [Burkholderia multivorans]
          Length = 311

 Score =  352 bits (903), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 217/310 (70%), Positives = 269/310 (86%), Gaps = 1/310 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++ +L ISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLXISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQNAGLVA 339
            +R++ G+ A
Sbjct: 300 RIRESLGVAA 309


>gi|312888365|ref|ZP_07747941.1| recA protein [Mucilaginibacter paludis DSM 18603]
 gi|311299199|gb|EFQ76292.1| recA protein [Mucilaginibacter paludis DSM 18603]
          Length = 335

 Score =  352 bits (903), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 211/327 (64%), Positives = 266/327 (81%), Gaps = 2/327 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+ V+K KAL+  L ++++ YGKG IM+LG      E IEV+S+GSLGLDIALG+GG PK
Sbjct: 1   MSSVEKLKALQLTLDKLEKSYGKGTIMKLGDTA--IEPIEVISTGSLGLDIALGVGGLPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++EIYGPESSGKTTL++H IA+ QK GG  AF+DAEHA D  YA++LGVD++NLLISQ
Sbjct: 59  GRVIEIYGPESSGKTTLSIHAIAECQKAGGIAAFIDAEHAFDKYYAKRLGVDVENLLISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI D L+RSGA+DIIVIDSVAAL P++EIEG+MG+S  G+QARLMSQALRKL
Sbjct: 119 PDNGEQALEIADNLIRSGAIDIIVIDSVAALVPKSEIEGEMGDSKMGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T +IS++ C  +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRRV  IKD D ++
Sbjct: 179 TGTISKTGCCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRVSQIKDTDEVS 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ +VK+VKNK+A PF+  EFDIM+GEGIS  GE+IDLGV+  I+ K+G+WFS+   RL
Sbjct: 239 GNRVKVKIVKNKVAPPFRIAEFDIMFGEGISKAGEIIDLGVEYEIIKKAGSWFSYGDTRL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333
           GQGR+  K  + +N E+ E +E  +R 
Sbjct: 299 GQGRDAVKQLILDNPELMEELEEKIRA 325


>gi|312866826|ref|ZP_07727039.1| RecA protein [Streptococcus parasanguinis F0405]
 gi|322390449|ref|ZP_08063969.1| recombination protein A [Streptococcus parasanguinis ATCC 903]
 gi|311097609|gb|EFQ55840.1| RecA protein [Streptococcus parasanguinis F0405]
 gi|321142848|gb|EFX38306.1| recombination protein A [Streptococcus parasanguinis ATCC 903]
          Length = 381

 Score =  352 bits (903), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 199/375 (53%), Positives = 272/375 (72%), Gaps = 14/375 (3%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +D   +    ++ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG
Sbjct: 8   LDDISKKFGDEREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALG 65

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++ 
Sbjct: 66  AGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNID 125

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MS
Sbjct: 126 ELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMS 185

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK
Sbjct: 186 QAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIK 245

Query: 241 ----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
                KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+G
Sbjct: 246 GTGDQKDTNVGKETKIKVVKNKVAPPFKEAMVEIMYGEGISRTGELVKIATDLDIIQKAG 305

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA-- 354
           AW+S+ G+++GQG EN+K FL ++ EI + I+  +R + GL+ +    +    T++ A  
Sbjct: 306 AWYSYNGEKIGQGSENAKKFLADHPEIFDEIDHKVRVHFGLIEEDEAVKTLDKTEEAAPV 365

Query: 355 ------DKDDTDNVE 363
                 D DD   +E
Sbjct: 366 VEEVTLDLDDAIEIE 380


>gi|157326909|gb|ABV44567.1| RecA [Burkholderia cenocepacia]
          Length = 305

 Score =  352 bits (903), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 217/306 (70%), Positives = 267/306 (87%), Gaps = 1/306 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI
Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299

Query: 324 AENIES 329
           A  IE+
Sbjct: 300 AREIEN 305


>gi|322515028|ref|ZP_08068037.1| recombination protein A [Actinobacillus ureae ATCC 25976]
 gi|322118979|gb|EFX91152.1| recombination protein A [Actinobacillus ureae ATCC 25976]
          Length = 376

 Score =  352 bits (903), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 221/358 (61%), Positives = 281/358 (78%), Gaps = 9/358 (2%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K+++   K KAL AAL+QI++ +GKG+IM+LG   ++   IE VS+GS+GLD ALGIGG 
Sbjct: 15  KQIDPEQKEKALAAALAQIEKQFGKGSIMRLGDTQAL--DIEAVSTGSIGLDAALGIGGL 72

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P GRIVEIYGPESSGKTTL L  IAQ+QK+G TCAF+DAEHALD +YARKLGVD   LLI
Sbjct: 73  PMGRIVEIYGPESSGKTTLTLSVIAQAQKSGKTCAFIDAEHALDPVYARKLGVDTDALLI 132

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALR
Sbjct: 133 SQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALR 192

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT++I  + C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G +KD D 
Sbjct: 193 KLTANIKVTNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRSGVVKDGDE 252

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + G++T+VK+VKNK+A PF++V+FDIMYG+GIS   EL+ L      + K+GAWFS++G 
Sbjct: 253 VVGSETKVKIVKNKVAPPFREVQFDIMYGKGISRMNELLILAEANGFIQKAGAWFSYEGT 312

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           ++GQG+ N+  +L+EN EIA  IE  +R+        L+  P   +  + +  D D+V
Sbjct: 313 KIGQGKNNAIKWLKENTEIANKIEQEIRE-------LLISTPEKTSAGEQNVLDADDV 363


>gi|325956365|ref|YP_004291777.1| recombinase A [Lactobacillus acidophilus 30SC]
 gi|325332930|gb|ADZ06838.1| recombinase A [Lactobacillus acidophilus 30SC]
          Length = 364

 Score =  352 bits (903), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 189/358 (52%), Positives = 272/358 (75%), Gaps = 6/358 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K  AL+AAL +I++ +GKGA+M++G +      I  V +GSL LD A+G+GG+P+
Sbjct: 1   MAKDEKQAALDAALKKIEKNFGKGAVMRMGEKADT--QISTVPTGSLALDAAIGVGGYPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQ
Sbjct: 59  GRIIEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL
Sbjct: 119 PNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + +IS++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK    + 
Sbjct: 179 SGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDVL 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+     I+DK+G+W+S+K  R+
Sbjct: 239 GNRVKIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMATDKDIIDKAGSWYSYKNDRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL----VADSLLQEPAINTKDDADKDDTD 360
           GQGREN+K +L ++ +I ++I+  +R+  G+    +AD    +      ++A ++++D
Sbjct: 299 GQGRENAKKYLEDHPDIYQDIQEQVRKAYGIDEKSIADRENPKKIKEKHEEAQQEESD 356


>gi|296803080|gb|ADH51616.1| DNA recombinase [Burkholderia contaminans]
          Length = 307

 Score =  352 bits (903), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 218/308 (70%), Positives = 268/308 (87%), Gaps = 1/308 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+
Sbjct: 60  AELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG
Sbjct: 120 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  F
Sbjct: 180 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 239

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           DI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE
Sbjct: 240 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 299

Query: 329 SLLRQNAG 336
           + +R++ G
Sbjct: 300 NRIRESLG 307


>gi|77408125|ref|ZP_00784871.1| recA protein [Streptococcus agalactiae COH1]
 gi|77173225|gb|EAO76348.1| recA protein [Streptococcus agalactiae COH1]
          Length = 379

 Score =  352 bits (903), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 198/351 (56%), Positives = 267/351 (76%), Gaps = 7/351 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRIV
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIV 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+R    IK     KD   
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRGNTQIKGTGEHKDHNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PF++   +IMYGEGIS  GELI +     I+ K+GAW+S+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFREAFVEIMYGEGISRTGELIKIASDLDIIXKAGAWYSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA-DSLLQEPAINTKDDADK 356
           GQG EN+K +L +N  I + I+  +R + G+   DS +Q   +  K++AD 
Sbjct: 316 GQGSENAKKYLADNPAIFDEIDHKVRVHFGMTEDDSPVQSELVEEKNEADD 366


>gi|315037892|ref|YP_004031460.1| recombinase A [Lactobacillus amylovorus GRL 1112]
 gi|312276025|gb|ADQ58665.1| recombinase A [Lactobacillus amylovorus GRL 1112]
 gi|327183184|gb|AEA31631.1| recombinase A [Lactobacillus amylovorus GRL 1118]
          Length = 364

 Score =  352 bits (903), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 190/358 (53%), Positives = 272/358 (75%), Gaps = 6/358 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K  AL+AAL +I++ +GKGA+M++G +      I  V +GSL LD A+G+GG+P+
Sbjct: 1   MAKDEKQAALDAALKKIEKNFGKGAVMRMGEKADT--QISTVPTGSLALDAAIGVGGYPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQ
Sbjct: 59  GRIIEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL
Sbjct: 119 PNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + +IS++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK    + 
Sbjct: 179 SGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDVL 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+     I+DK+G+W+S+K  R+
Sbjct: 239 GNRVKIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKNDRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL----VADSLLQEPAINTKDDADKDDTD 360
           GQGREN+K +L ++ +I ++I+  +R+  G+    +AD    E      ++A ++++D
Sbjct: 299 GQGRENAKKYLEDHPDIYQDIQEQVRKAYGIDEKSIADRENPEKIKEKHEEAQQEESD 356


>gi|226227323|ref|YP_002761429.1| RecA protein [Gemmatimonas aurantiaca T-27]
 gi|226090514|dbj|BAH38959.1| RecA protein [Gemmatimonas aurantiaca T-27]
          Length = 341

 Score =  352 bits (903), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 208/343 (60%), Positives = 273/343 (79%), Gaps = 2/343 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   DK KAL  A++QI++  GKG+IM+LG+   +   +E + +G++ LD A+G+GG P+
Sbjct: 1   MITDDKRKALALAVAQIEKSCGKGSIMRLGTDAKVR--VESIPTGAINLDAAIGVGGIPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+ EIYGPESSGKTTL LH +A +QK GG  AF+DAEHALD+ YA+KLGVD++N+LISQ
Sbjct: 59  GRVTEIYGPESSGKTTLCLHVVANAQKQGGVAAFIDAEHALDTEYAKKLGVDVENMLISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI ++LVRSGAVD+IVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL
Sbjct: 119 PDTGEQALEICEILVRSGAVDVIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T +I+RSK  ++FINQ+R KIGVMFG+PETTTGG ALKFY+S+RLDIRR+G +K+K+ + 
Sbjct: 179 TGAIARSKVSVIFINQLREKIGVMFGNPETTTGGKALKFYASLRLDIRRIGPVKEKEDVI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G+  RVKVVKNK+A PFKQ EFDIMY EGIS    L+D+GV++ I+DK+GAW+S+  QR+
Sbjct: 239 GSHVRVKVVKNKVAPPFKQAEFDIMYAEGISHTSLLVDIGVESGIIDKAGAWYSYGTQRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
           GQGREN+K+FL++N  +   +E  ++   G+    +  E A  
Sbjct: 299 GQGRENAKMFLKDNPALMAEVEDKVKTVLGVKNGDVGAEEAEE 341


>gi|296803006|gb|ADH51579.1| DNA recombinase [Burkholderia contaminans]
          Length = 303

 Score =  352 bits (903), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 217/303 (71%), Positives = 266/303 (87%), Gaps = 1/303 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LV
Sbjct: 60  TLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FIN
Sbjct: 120 RSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ 
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN 
Sbjct: 240 PFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENP 299

Query: 322 EIA 324
           EIA
Sbjct: 300 EIA 302


>gi|301309815|ref|ZP_07215754.1| protein RecA [Bacteroides sp. 20_3]
 gi|300831389|gb|EFK62020.1| protein RecA [Bacteroides sp. 20_3]
          Length = 350

 Score =  352 bits (903), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 207/334 (61%), Positives = 267/334 (79%), Gaps = 2/334 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +  K     DK KAL AA+ +I++ YGKG+IM+LG +    E IEV+ +GS+ L+ ALG+
Sbjct: 15  EGGKPAANADKLKALRAAMDKIEKNYGKGSIMKLGDES--IEDIEVIPTGSIALNAALGV 72

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+PKGRIVEIYGPESSGKTT+A+H IA++QK GG  AF+DAEHA D  YA KLGVD++N
Sbjct: 73  GGYPKGRIVEIYGPESSGKTTIAIHAIAEAQKKGGIAAFIDAEHAFDRFYAEKLGVDVEN 132

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L ISQPD GEQALEI + L+RS AVDIIVIDSVAALTP+AEIEGDMG+S  G+QARLMSQ
Sbjct: 133 LWISQPDNGEQALEIAEQLIRSSAVDIIVIDSVAALTPKAEIEGDMGDSKMGLQARLMSQ 192

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT++I+++    +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR +G +KD
Sbjct: 193 ALRKLTAAINKTNTTCIFINQLRDKIGVMFGNPETTTGGNALKFYASVRLDIRSIGKLKD 252

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            D I GNQ RVKV+KNK+A PF++ EFDIM+G+GIS  GE+IDLG + +I+ KSG+W+S+
Sbjct: 253 GDEIKGNQVRVKVIKNKVAPPFRKAEFDIMFGQGISRSGEIIDLGSELNIIKKSGSWYSY 312

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
              +LGQGR+ +K  + +N E+A+ +  L+ +  
Sbjct: 313 NDTKLGQGRDAAKQCVEDNPELADELSELIFEAL 346


>gi|256840733|ref|ZP_05546241.1| recombination protein RecA [Parabacteroides sp. D13]
 gi|262381338|ref|ZP_06074476.1| RecA protein [Bacteroides sp. 2_1_33B]
 gi|256738005|gb|EEU51331.1| recombination protein RecA [Parabacteroides sp. D13]
 gi|262296515|gb|EEY84445.1| RecA protein [Bacteroides sp. 2_1_33B]
          Length = 350

 Score =  352 bits (903), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 207/334 (61%), Positives = 267/334 (79%), Gaps = 2/334 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +  K     DK KAL AA+ +I++ YGKG+IM+LG +    E IEV+ +GS+ L+ ALG+
Sbjct: 15  EGGKPAANTDKLKALRAAMDKIEKNYGKGSIMKLGDES--IEDIEVIPTGSIALNAALGV 72

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+PKGRIVEIYGPESSGKTT+A+H IA++QK GG  AF+DAEHA D  YA KLGVD++N
Sbjct: 73  GGYPKGRIVEIYGPESSGKTTIAIHAIAEAQKKGGIAAFIDAEHAFDRFYAEKLGVDVEN 132

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L ISQPD GEQALEI + L+RS AVDIIVIDSVAALTP+AEIEGDMG+S  G+QARLMSQ
Sbjct: 133 LWISQPDNGEQALEIAEQLIRSSAVDIIVIDSVAALTPKAEIEGDMGDSKMGLQARLMSQ 192

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT++I+++    +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR +G +KD
Sbjct: 193 ALRKLTAAINKTNTTCIFINQLRDKIGVMFGNPETTTGGNALKFYASVRLDIRSIGKLKD 252

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            D I GNQ RVKV+KNK+A PF++ EFDIM+G+GIS  GE+IDLG + +I+ KSG+W+S+
Sbjct: 253 GDEIKGNQVRVKVIKNKVAPPFRKAEFDIMFGQGISRSGEIIDLGSELNIIKKSGSWYSY 312

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
              +LGQGR+ +K  + +N E+A+ +  L+ +  
Sbjct: 313 NDTKLGQGRDAAKQCVEDNPELADELSELIFEAL 346


>gi|158340276|ref|YP_001521446.1| recombinase A [Acaryochloris marina MBIC11017]
 gi|158310517|gb|ABW32132.1| protein RecA [Acaryochloris marina MBIC11017]
          Length = 357

 Score =  352 bits (903), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 197/360 (54%), Positives = 263/360 (73%), Gaps = 5/360 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M  + EM   +K KAL+  +  +++ +GKGAIM+LG    +   IE  SSG+L LD+ALG
Sbjct: 1   MSAKNEM--TEKQKALDLVMKNVEKTFGKGAIMRLGDATRM--QIETNSSGALTLDLALG 56

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG P+GR++EIYGPESSGKTT+ALH I+Q QKTGG  AFVDAEHALD +YA  LGVD+ 
Sbjct: 57  -GGLPRGRVIEIYGPESSGKTTVALHAISQIQKTGGVAAFVDAEHALDPVYAAALGVDIS 115

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPD+GE ALEI D LVRS AVD++V+DSVAALTPRAEIEGDMG+S  G+QARLMS
Sbjct: 116 ELLVSQPDSGEMALEIVDQLVRSSAVDLVVVDSVAALTPRAEIEGDMGDSHMGLQARLMS 175

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRK+TS+I++S   ++F+NQ+R KIGV +GSPE TTGGNALKFY+SVRLDIRR+ ++K
Sbjct: 176 QALRKITSNIAKSGSTVIFLNQLRQKIGVTYGSPEVTTGGNALKFYASVRLDIRRIQTLK 235

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
               + G + +VKV KNK+A PF+  EFDI++G+GIS  G L+D+  +  I+ + GAW+S
Sbjct: 236 KGTDMYGIRAKVKVAKNKVAPPFRIAEFDILFGQGISTMGCLVDMAEETDIIVRKGAWYS 295

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           + G  +GQGREN+  +  +N E ++ +E  +RQ   L +            + AD ++ D
Sbjct: 296 YDGSNIGQGRENTIHYFLDNPEFSQEVEQQVRQKLELGSKVSANSITTVEIEPADTEEVD 355


>gi|328944736|gb|EGG38897.1| recombination protein A [Streptococcus sanguinis SK1087]
          Length = 382

 Score =  352 bits (903), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 200/376 (53%), Positives = 271/376 (72%), Gaps = 15/376 (3%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +D   +    ++ KAL+ AL  I++ +GKGAIM+LG +    + ++V+SSGSL LDIALG
Sbjct: 8   LDEISKKFGDERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALG 65

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++ 
Sbjct: 66  AGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNID 125

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MS
Sbjct: 126 ELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMS 185

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK
Sbjct: 186 QAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIK 245

Query: 241 ----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
               +KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  GELI +     I+ K+G
Sbjct: 246 GTGDEKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAG 305

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA-- 354
           AW+S+  +++GQG EN+K +L ++ E+ + I+  +R   GL+    L E   N  D    
Sbjct: 306 AWYSYNDEKIGQGSENAKKYLADHPEVFDEIDRQVRVRYGLIEGDDLAEAVGNKADSPVG 365

Query: 355 -------DKDDTDNVE 363
                  D DD   +E
Sbjct: 366 TMEEVTLDLDDAIEIE 381


>gi|296803048|gb|ADH51600.1| DNA recombinase [Burkholderia contaminans]
          Length = 305

 Score =  352 bits (903), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 217/306 (70%), Positives = 266/306 (86%), Gaps = 1/306 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L
Sbjct: 1   QFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTL 59

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+
Sbjct: 60  QVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGS 119

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RM
Sbjct: 120 IDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRM 179

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++
Sbjct: 180 KIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRE 239

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
             FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA 
Sbjct: 240 AIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAR 299

Query: 326 NIESLL 331
            IE+ +
Sbjct: 300 EIENRI 305


>gi|326319349|ref|YP_004237021.1| recA protein [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323376185|gb|ADX48454.1| recA protein [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 354

 Score =  352 bits (903), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 214/315 (67%), Positives = 270/315 (85%), Gaps = 1/315 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG IM+LG  G   E I+VVS+GSLGLD+ALG+GG P+GR++EIYGPESSGKTT
Sbjct: 25  IEKQFGKGTIMRLGE-GEAIEDIQVVSTGSLGLDVALGVGGLPRGRVIEIYGPESSGKTT 83

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK  GTCAFVDAEHALD  YA+KLGV + +LLISQPDTGEQALEI D LVR
Sbjct: 84  LTLQVIAEMQKQNGTCAFVDAEHALDIQYAQKLGVHVPDLLISQPDTGEQALEIVDSLVR 143

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AEIEG+MG++LPG+QARLMSQALRKLT++I ++ C+++FINQ
Sbjct: 144 SGAVDLIVVDSVAALTPKAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQ 203

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK  D   GN+T+VKVVKNK++ P
Sbjct: 204 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPP 263

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FK  EFDI++GEGIS  GE+ID+GV A I++KSGAW+++ G+++GQGR+N++ FLREN +
Sbjct: 264 FKTAEFDILFGEGISREGEIIDMGVNARIIEKSGAWYAYNGEKIGQGRDNAREFLRENAD 323

Query: 323 IAENIESLLRQNAGL 337
           +A  IE+ +R   G+
Sbjct: 324 LAREIENKVRDGLGV 338


>gi|324989658|gb|EGC21602.1| recombination protein A [Streptococcus sanguinis SK353]
          Length = 382

 Score =  352 bits (903), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 199/376 (52%), Positives = 271/376 (72%), Gaps = 15/376 (3%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +D   +    ++ KAL+ AL  I++ +GKGAIM+LG +    + ++V+SSGSL LDIALG
Sbjct: 8   LDEISKKFGDERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALG 65

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++ 
Sbjct: 66  AGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNID 125

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MS
Sbjct: 126 ELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMS 185

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK
Sbjct: 186 QAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIK 245

Query: 241 ----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
               +KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  GELI +     I+ K+G
Sbjct: 246 GTGDEKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAG 305

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA-- 354
           AW+S+  +++GQG EN+K +L ++ E+ + I+  +R   GL+    + E   N  D    
Sbjct: 306 AWYSYNDEKIGQGSENAKKYLADHPEVFDEIDRQVRVRYGLIDGDDMAEAVGNKADSPVE 365

Query: 355 -------DKDDTDNVE 363
                  D DD   +E
Sbjct: 366 TLEEVTLDLDDAIEIE 381


>gi|322374973|ref|ZP_08049487.1| protein RecA [Streptococcus sp. C300]
 gi|321280473|gb|EFX57512.1| protein RecA [Streptococcus sp. C300]
          Length = 383

 Score =  352 bits (902), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 198/354 (55%), Positives = 264/354 (74%), Gaps = 6/354 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG GG+PKGRI
Sbjct: 18  ADREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRI 75

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+
Sbjct: 76  IEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDS 135

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +S
Sbjct: 136 GEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGAS 195

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSI 245
           I+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KD+ 
Sbjct: 196 INKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIKGTGDQKDTN 255

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAW+S+KG++
Sbjct: 256 VGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIQKAGAWYSYKGEK 315

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           +GQG EN+K +L ++ EI + I+  +R   GL+ D     P    +D A   + 
Sbjct: 316 IGQGSENAKKYLADHPEIFDAIDHQVRVQYGLIEDEEGTTPTTVAEDLAPNQEV 369


>gi|19746983|ref|NP_608119.1| recombinase A [Streptococcus pyogenes MGAS8232]
 gi|50915144|ref|YP_061116.1| recombinase A [Streptococcus pyogenes MGAS10394]
 gi|94989440|ref|YP_597541.1| recombinase A [Streptococcus pyogenes MGAS9429]
 gi|94993329|ref|YP_601428.1| recombinase A [Streptococcus pyogenes MGAS2096]
 gi|139474556|ref|YP_001129272.1| recombinase A [Streptococcus pyogenes str. Manfredo]
 gi|306826477|ref|ZP_07459788.1| recombination protein A [Streptococcus pyogenes ATCC 10782]
 gi|23822028|sp|Q8NZ30|RECA_STRP8 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|59798142|sp|Q5X9I0|RECA_STRP6 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|122986883|sp|Q1J9C7|RECA_STRPB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|122987065|sp|Q1JJH6|RECA_STRPC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166220685|sp|A2RGU8|RECA_STRPG RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|19749237|gb|AAL98618.1| recombination protein [Streptococcus pyogenes MGAS8232]
 gi|50904218|gb|AAT87933.1| RecA [Streptococcus pyogenes MGAS10394]
 gi|94542948|gb|ABF32997.1| RecA protein [Streptococcus pyogenes MGAS9429]
 gi|94546837|gb|ABF36884.1| RecA protein [Streptococcus pyogenes MGAS2096]
 gi|134272803|emb|CAM31080.1| RecA recombinase (recombinase A) [Streptococcus pyogenes str.
           Manfredo]
 gi|304431336|gb|EFM34334.1| recombination protein A [Streptococcus pyogenes ATCC 10782]
          Length = 378

 Score =  352 bits (902), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 196/350 (56%), Positives = 265/350 (75%), Gaps = 6/350 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KDS  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGTTQIKGTGDQKDSSI 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK  E +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           GQG EN+K +L E+ E+ + I+  +R   GL+ +S  +       ++ D 
Sbjct: 316 GQGSENAKRYLAEHPELFDEIDRKVRVKFGLLEESEEESAMAVASEETDD 365


>gi|225869412|ref|YP_002745360.1| RecA recombinase (recombinase A) [Streptococcus equi subsp.
           zooepidemicus]
 gi|225871410|ref|YP_002747357.1| RecA recombinase (recombinase A) [Streptococcus equi subsp. equi
           4047]
 gi|254790447|sp|C0MAR6|RECA_STRE4 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|259563345|sp|C0MGB6|RECA_STRS7 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|225700814|emb|CAW95513.1| RecA recombinase (recombinase A) [Streptococcus equi subsp. equi
           4047]
 gi|225702688|emb|CAX00795.1| RecA recombinase (recombinase A) [Streptococcus equi subsp.
           zooepidemicus]
          Length = 378

 Score =  352 bits (902), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 200/362 (55%), Positives = 269/362 (74%), Gaps = 11/362 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G++  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDNHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KDS  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGTTQIKGTGDQKDSSI 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK  E +IMYGEGIS  GELI +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELIKIASDLDIIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK-----DDTDN 361
           GQG EN+K +L ++ E+ + I+  +R   GL+ D+     A      AD+     DD   
Sbjct: 316 GQGSENAKRYLADHPELFDEIDHKVRVKFGLLEDTEESAAADTVAAKADELVLELDDAIE 375

Query: 362 VE 363
           +E
Sbjct: 376 IE 377


>gi|195978966|ref|YP_002124210.1| recombinase A [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|238689786|sp|B4U0I8|RECA_STREM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|195975671|gb|ACG63197.1| DNA recombinase protein RecA [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 378

 Score =  352 bits (902), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 199/362 (54%), Positives = 268/362 (74%), Gaps = 11/362 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G++  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDNHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KDS  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGTTQIKGTGDQKDSSI 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK  E +IMYGEGIS  GELI +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELIKIASDLDIIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK-----DDTDN 361
           GQG EN+K +L ++ E+ + I+  +R   GL+ D+            AD+     DD   
Sbjct: 316 GQGSENAKRYLADHPELFDEIDHKVRVKFGLLEDTEESAAVDPAAAKADELVLELDDAIE 375

Query: 362 VE 363
           +E
Sbjct: 376 IE 377


>gi|295692537|ref|YP_003601147.1| protein reca [Lactobacillus crispatus ST1]
 gi|295030643|emb|CBL50122.1| Protein recA [Lactobacillus crispatus ST1]
          Length = 366

 Score =  352 bits (902), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 188/357 (52%), Positives = 266/357 (74%), Gaps = 2/357 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K  AL+AAL +I++ +GKGA+M++G +      I  V +GSL LD A+G+GG+P+
Sbjct: 1   MAKDEKQAALDAALKKIEKNFGKGAVMRMGEKADT--QISTVPTGSLALDAAIGVGGYPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQ
Sbjct: 59  GRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL
Sbjct: 119 PNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + +IS++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK    + 
Sbjct: 179 SGNISKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDVL 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+     I+DK+G+W+S+K  R+
Sbjct: 239 GNRVKIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKSDRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           GQGREN+K +L E+ +I ++I+  +RQ  G+   S+          +  ++     E
Sbjct: 299 GQGRENAKKYLEEHPDIYQDIQKQVRQAYGIDEKSIADREDPEKIKEKREEAKTEKE 355


>gi|198276646|ref|ZP_03209177.1| hypothetical protein BACPLE_02842 [Bacteroides plebeius DSM 17135]
 gi|198270171|gb|EDY94441.1| hypothetical protein BACPLE_02842 [Bacteroides plebeius DSM 17135]
          Length = 349

 Score =  352 bits (902), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 202/324 (62%), Positives = 264/324 (81%), Gaps = 2/324 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  +K KAL+AA+ +I++ +GKG+IM++G      + +EV+ +GS+ L+ ALG+GG+PKG
Sbjct: 20  NNSEKLKALQAAMDKIEKSFGKGSIMKMGDDH--VQEVEVIPTGSIALNAALGVGGYPKG 77

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EIYGPESSGKTTLA+H IA++Q+ GG  AF+DAEHA D  YA KLGVD+ NL ISQP
Sbjct: 78  RIIEIYGPESSGKTTLAIHAIAEAQRAGGIAAFIDAEHAFDRFYAAKLGVDIDNLWISQP 137

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++  G+QARLMSQALRKLT
Sbjct: 138 DNGEQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLT 197

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           S+IS++    +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   +KD + + G
Sbjct: 198 SAISKTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRATQLKDGEEVIG 257

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           NQ RVKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG +  I+ KSG+W+S+   +LG
Sbjct: 258 NQVRVKVVKNKVAPPFRKAEFDIMFGEGISRSGEIIDLGAELGIIKKSGSWYSYNDTKLG 317

Query: 308 QGRENSKIFLRENIEIAENIESLL 331
           QGR+ +K  +++N E+A+ +E L+
Sbjct: 318 QGRDAAKQCIQDNPELADELEKLI 341


>gi|313893135|ref|ZP_07826712.1| RecA protein [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442488|gb|EFR60903.1| RecA protein [Veillonella sp. oral taxon 158 str. F0412]
          Length = 346

 Score =  352 bits (902), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 204/346 (58%), Positives = 273/346 (78%), Gaps = 1/346 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M +  +  AL+ AL QI++ +GKGAIM+LG        +EV+SSGSL +DIA+G+GGFP+
Sbjct: 1   MAVDGRQAALDNALKQIEKDFGKGAIMRLGEAADRMN-VEVISSGSLAIDIAVGVGGFPR 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++EIYGPESSGKTT+ALH +A++QK GG  AF+DAEHA+D +YAR LGVD+ NLLISQ
Sbjct: 60  GRVIEIYGPESSGKTTVALHAVAEAQKQGGIAAFIDAEHAMDPVYARNLGVDINNLLISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT+ LVRSGAVDI+V+DSVAAL P+AEIEG+MG++  G+QARLMS+ALRKL
Sbjct: 120 PDNGEQALEITEALVRSGAVDIVVVDSVAALVPKAEIEGEMGDAHVGLQARLMSKALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T  IS+SK +++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+R+   IK  +   
Sbjct: 180 TGIISKSKTVVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRKGELIKANNENV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T+VKVVKNK+A PFK  EFD+MYGEGIS  G LID+G    I++KSGAW+S+ G+R+
Sbjct: 240 GARTKVKVVKNKVAPPFKTAEFDLMYGEGISKAGTLIDIGTNMEIINKSGAWYSYNGERM 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GQG+E++K +L +N ++A+ I+ ++R    +  + +       T++
Sbjct: 300 GQGKESAKQYLLDNPQVADEIDRIIRDTLAVGTEEIDVIGEEVTEE 345


>gi|325688809|gb|EGD30817.1| recombination protein A [Streptococcus sanguinis SK115]
          Length = 382

 Score =  352 bits (902), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 200/376 (53%), Positives = 272/376 (72%), Gaps = 15/376 (3%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +D   +    ++ KAL+ AL  I++ +GKGAIM+LG +    + ++V+SSGSL LDIALG
Sbjct: 8   LDEISKKFGDERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALG 65

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++ 
Sbjct: 66  AGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNID 125

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MS
Sbjct: 126 ELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMS 185

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK
Sbjct: 186 QAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIK 245

Query: 241 ----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
               +KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  GELI +     I+ K+G
Sbjct: 246 GTGDEKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAG 305

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA-- 354
           AW+S+  +++GQG EN+K +L ++ E+ + I+  +R   GL+    L E   N  D +  
Sbjct: 306 AWYSYNDEKIGQGSENAKKYLADHPEVFDEIDRQVRVRYGLIEGDDLAEAVGNKADSSVE 365

Query: 355 -------DKDDTDNVE 363
                  D DD   +E
Sbjct: 366 TMEEVTLDLDDAIEIE 381


>gi|327463462|gb|EGF09781.1| recombination protein A [Streptococcus sanguinis SK1057]
          Length = 382

 Score =  352 bits (902), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 199/376 (52%), Positives = 271/376 (72%), Gaps = 15/376 (3%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +D   +    ++ KAL+ AL  I++ +GKGAIM+LG +    + ++V+SSGSL LDIALG
Sbjct: 8   LDEISKKFGEERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALG 65

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++ 
Sbjct: 66  AGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNID 125

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MS
Sbjct: 126 ELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMS 185

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK
Sbjct: 186 QAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIK 245

Query: 241 ----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
               +KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  GELI +     I+ K+G
Sbjct: 246 GTGDEKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAG 305

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA-- 354
           AW+S+  +++GQG EN+K +L ++ E+ + I+  +R   GL+    + E   N  D    
Sbjct: 306 AWYSYNDEKIGQGSENAKKYLADHPEVFDEIDRQVRVRYGLIDGDDMAEAVGNKADSPVE 365

Query: 355 -------DKDDTDNVE 363
                  D DD   +E
Sbjct: 366 TLEEVTLDLDDAIEIE 381


>gi|30142196|emb|CAD83085.1| RecA protein [Burkholderia glumae]
          Length = 334

 Score =  352 bits (902), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 215/312 (68%), Positives = 268/312 (85%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
            AAL+QI++ +GKG   ++ +     + I+VVS+GSLGLDIALG+GG P+GR+VEIYGPE
Sbjct: 1   AAALAQIEKQFGKGIDHEVSAMPRPRKYIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPE 60

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEI
Sbjct: 61  SSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEI 120

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+
Sbjct: 121 TDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCL 180

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVK
Sbjct: 181 VIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVK 240

Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316
           NK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ F
Sbjct: 241 NKVSPPFRESIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREF 300

Query: 317 LRENIEIAENIE 328
           LREN +IA  IE
Sbjct: 301 LRENPDIAREIE 312


>gi|324995829|gb|EGC27740.1| recombination protein A [Streptococcus sanguinis SK678]
 gi|325686742|gb|EGD28768.1| recombination protein A [Streptococcus sanguinis SK72]
          Length = 382

 Score =  352 bits (902), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 200/376 (53%), Positives = 271/376 (72%), Gaps = 15/376 (3%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +D   +    ++ KAL+ AL  I++ +GKGAIM+LG +    + ++V+SSGSL LDIALG
Sbjct: 8   LDEISKKFGDERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALG 65

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++ 
Sbjct: 66  AGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNID 125

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MS
Sbjct: 126 ELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMS 185

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK
Sbjct: 186 QAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIK 245

Query: 241 ----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
               +KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  GELI +     I+ K+G
Sbjct: 246 GTGDEKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAG 305

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA-- 354
           AW+S+  +++GQG EN+K +L ++ E+ + I+  +R   GL+    L E   N  D    
Sbjct: 306 AWYSYNDEKIGQGSENAKKYLADHPEVFDEIDRQVRVRYGLIEGDDLAEAVGNKADSPVE 365

Query: 355 -------DKDDTDNVE 363
                  D DD   +E
Sbjct: 366 TMEEVTLDLDDAIEIE 381


>gi|325298694|ref|YP_004258611.1| Protein recA [Bacteroides salanitronis DSM 18170]
 gi|324318247|gb|ADY36138.1| Protein recA [Bacteroides salanitronis DSM 18170]
          Length = 350

 Score =  352 bits (902), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 204/324 (62%), Positives = 265/324 (81%), Gaps = 2/324 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  ++ KAL+AA+ +I++ +GKG+IM++G      E +EV+ +GS+ L+ ALG+GG+PKG
Sbjct: 21  NNSERLKALQAAMDKIEKSFGKGSIMKMGDDH--VEEVEVIPTGSIALNAALGVGGYPKG 78

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQP
Sbjct: 79  RIIEIYGPESSGKTTLAIHAIAEAQKLGGIAAFIDAEHAFDRFYAAKLGVDIDNLWISQP 138

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++  G+QARLMSQALRKLT
Sbjct: 139 DNGEQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLT 198

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           S+IS++    +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR+  +KD + + G
Sbjct: 199 SAISKTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRISQLKDGEDVIG 258

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           NQ RVKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG +  I+ KSG+W+S+   +LG
Sbjct: 259 NQVRVKVVKNKVAPPFRKAEFDIMFGEGISRSGEIIDLGSELGIIKKSGSWYSYNDTKLG 318

Query: 308 QGRENSKIFLRENIEIAENIESLL 331
           QGR+ +K  +++N E+AE +E L+
Sbjct: 319 QGRDAAKQCIQDNPELAEELEGLI 342


>gi|251783472|ref|YP_002997777.1| recombinase A [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242392104|dbj|BAH82563.1| recombinase A [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 378

 Score =  352 bits (902), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 195/350 (55%), Positives = 265/350 (75%), Gaps = 6/350 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KDS  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGTTQIKGTGDQKDSSI 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK  E +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           GQG EN+K +L ++ E+ + I+  +R   GL+ +S  +       ++ D 
Sbjct: 316 GQGSENAKRYLADHPELFDEIDRKVRVKFGLLEESEEESAMAVAAEETDD 365


>gi|47571296|gb|AAT35805.1| RecA [Mycobacterium triviale]
          Length = 304

 Score =  352 bits (902), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 193/303 (63%), Positives = 252/303 (83%), Gaps = 2/303 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+ KALE AL+QI++ +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR
Sbjct: 4   VPDREKALELALAQIEKSHGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA++LGVD  +LL+SQPD
Sbjct: 62  VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKRLGVDTDSLLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQA+RK+T 
Sbjct: 122 TGEQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQAMRKMTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           ++S S    +FINQ+R K+GVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD     GN
Sbjct: 182 ALSNSGTTAIFINQLREKVGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV    + KSG+W++++G++LGQ
Sbjct: 242 RTRVKVVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVDHGFIRKSGSWYTYEGEQLGQ 301

Query: 309 GRE 311
           G+E
Sbjct: 302 GKE 304


>gi|161789230|ref|YP_001595611.1| hypothetical protein BMSA_0024 [Vibrio sp. 23023]
 gi|161761355|gb|ABX77001.1| recA [Vibrio sp. 23023]
          Length = 364

 Score =  352 bits (902), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 204/347 (58%), Positives = 272/347 (78%), Gaps = 5/347 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+SKAL   L+ I++ +GKGAIM LG   ++   +E +S+GSL LDIALG GG P GR+V
Sbjct: 19  DRSKALTTCLAMIEKQFGKGAIMCLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRMV 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL L  IA +QK G TCAF+DAEHALD IYA KLGVD+ NLL+SQPDTG
Sbjct: 77  EVYGPESSGKTTLTLELIAAAQKQGKTCAFIDAEHALDPIYAEKLGVDIANLLVSQPDTG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSG+VD++V+DSVAALTP+AE+EG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 137 EQALEICDALARSGSVDVMVVDSVAALTPKAELEGEMGDSHMGLQARMLSQAMRKLTGNL 196

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIG  +G+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+T
Sbjct: 197 KQSNCMCIFINQIRMKIG-GYGNPETTTGGNALKFYASVRLDIRRTGSIKEGDDVIGNET 255

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PFK  E  I++G+G +  GELI+LGVK  I++KSG W+S++G ++GQGR
Sbjct: 256 KIKVVKNKIAPPFKTAETQILFGQGFNRTGELIELGVKQKIIEKSGVWYSYQGDKIGQGR 315

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           + +  +L E+  +++ IE LLR    L+A ++  E  I +    D++
Sbjct: 316 QKACQYLVEHPAVSQEIEDLLRAQ--LLAPTVPAEENIQSSTPVDQE 360


>gi|158340913|ref|YP_001522081.1| recombinase A [Acaryochloris marina MBIC11017]
 gi|158311154|gb|ABW32767.1| protein RecA [Acaryochloris marina MBIC11017]
          Length = 352

 Score =  352 bits (902), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 193/355 (54%), Positives = 260/355 (73%), Gaps = 5/355 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M  + EM   +K KAL+  +  +++ +GKGAIM+LG    +   IE +S+G+L LD+ALG
Sbjct: 1   MSAKTEM--TEKQKALDLVMKNVEKTFGKGAIMRLGDAARM--QIETISTGALPLDLALG 56

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG PKGR++E+YGPESSGKTT+ALH IA+ QK+GG  AFVDAEHALD +YA  LGVD+ 
Sbjct: 57  -GGLPKGRVIEVYGPESSGKTTVALHAIAEIQKSGGVAAFVDAEHALDPVYAAALGVDVS 115

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+ QPD+GE ALE+ D LVRS AVD++V+DSVAALTPRAEIEGDMG+S  G+QARLMS
Sbjct: 116 ELLVCQPDSGEMALEVVDQLVRSSAVDLVVVDSVAALTPRAEIEGDMGDSHMGLQARLMS 175

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRK+TS+I +S   ++F+NQ+R KIGV +GSPE TTGGNALKFY+SVRLDIRRV ++K
Sbjct: 176 QALRKITSNICKSGSTVIFLNQLRQKIGVTYGSPEVTTGGNALKFYASVRLDIRRVQTLK 235

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
               + G + +VKV KNK+A PFK  EFDI++G+GIS  G L+D+  +A ++ + GAW+S
Sbjct: 236 KGTEMYGIRAKVKVAKNKVAPPFKLAEFDILFGQGISTVGCLVDMAEEAEVIVRKGAWYS 295

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           + G  +GQGREN+  +  ++ E ++ IE  +RQ   L  +           +D +
Sbjct: 296 YDGSNIGQGRENTIQYFGDHPEFSQKIEQQVRQKLELGGEVSANSTTPVEVEDEE 350


>gi|150008088|ref|YP_001302831.1| recombinase A [Parabacteroides distasonis ATCC 8503]
 gi|255014926|ref|ZP_05287052.1| recombinase A [Bacteroides sp. 2_1_7]
 gi|298376559|ref|ZP_06986514.1| protein RecA [Bacteroides sp. 3_1_19]
 gi|149936512|gb|ABR43209.1| RecA [Parabacteroides distasonis ATCC 8503]
 gi|298266437|gb|EFI08095.1| protein RecA [Bacteroides sp. 3_1_19]
          Length = 350

 Score =  352 bits (902), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 207/334 (61%), Positives = 267/334 (79%), Gaps = 2/334 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +  K     DK KAL AA+ +I++ YGKG+IM+LG +    E IEV+ +GS+ L+ ALG+
Sbjct: 15  EGGKPAANTDKLKALRAAMDKIEKNYGKGSIMKLGDEN--IEDIEVIPTGSIALNAALGV 72

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+PKGRIVEIYGPESSGKTT+A+H IA++QK GG  AF+DAEHA D  YA KLGVD++N
Sbjct: 73  GGYPKGRIVEIYGPESSGKTTIAIHAIAEAQKKGGIAAFIDAEHAFDRFYAEKLGVDVEN 132

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L ISQPD GEQALEI + L+RS AVDIIVIDSVAALTP+AEIEGDMG+S  G+QARLMSQ
Sbjct: 133 LWISQPDNGEQALEIAEQLIRSSAVDIIVIDSVAALTPKAEIEGDMGDSKMGLQARLMSQ 192

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT++I+++    +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR +G +KD
Sbjct: 193 ALRKLTAAINKTNTTCIFINQLRDKIGVMFGNPETTTGGNALKFYASVRLDIRSIGKLKD 252

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            D I GNQ RVKV+KNK+A PF++ EFDIM+G+GIS  GE+IDLG + +I+ KSG+W+S+
Sbjct: 253 GDEIKGNQVRVKVIKNKVAPPFRKAEFDIMFGQGISRSGEIIDLGSELNIIKKSGSWYSY 312

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
              +LGQGR+ +K  + +N E+A+ +  L+ +  
Sbjct: 313 NDTKLGQGRDAAKQCVEDNPELADELSELIFEAL 346


>gi|6225932|sp|O85502|RECA_STRPA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|3212104|gb|AAD04860.1| RecA protein [Streptococcus parasanguinis]
          Length = 381

 Score =  352 bits (902), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 199/375 (53%), Positives = 271/375 (72%), Gaps = 14/375 (3%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +D   +    ++ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG
Sbjct: 8   LDDITKKFGDEREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALG 65

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++ 
Sbjct: 66  AGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNID 125

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MS
Sbjct: 126 ELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMS 185

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK
Sbjct: 186 QAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIK 245

Query: 241 ----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
                KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+G
Sbjct: 246 GTGDQKDTNVGKETKIKVVKNKVAPPFKEAMVEIMYGEGISRTGELVKIATDLDIIQKAG 305

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA-- 354
           AW+S+ G+++GQG EN+K FL ++ EI + I+  +R + GL+      +    T++ A  
Sbjct: 306 AWYSYNGEKIGQGSENAKKFLADHPEIFDEIDHKVRVHFGLIEKDEAVKSLDKTEEAAPV 365

Query: 355 ------DKDDTDNVE 363
                 D DD   +E
Sbjct: 366 VEEVTLDLDDAIEIE 380


>gi|296803100|gb|ADH51626.1| DNA recombinase [Burkholderia multivorans]
          Length = 308

 Score =  351 bits (901), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 217/309 (70%), Positives = 269/309 (87%), Gaps = 1/309 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQNAGLV 338
            +R++ G+ 
Sbjct: 300 RIRESLGVA 308


>gi|331267066|ref|YP_004326696.1| recombinase A [Streptococcus oralis Uo5]
 gi|326683738|emb|CBZ01356.1| recombinase A [Streptococcus oralis Uo5]
          Length = 382

 Score =  351 bits (901), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 198/354 (55%), Positives = 264/354 (74%), Gaps = 6/354 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG GG+PKGRI
Sbjct: 17  ADREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRI 74

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+
Sbjct: 75  IEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDS 134

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +S
Sbjct: 135 GEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGAS 194

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSI 245
           I+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KD+ 
Sbjct: 195 INKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIKGTGDQKDTN 254

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAW+S+KG++
Sbjct: 255 VGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIQKAGAWYSYKGEK 314

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           +GQG EN+K +L ++ EI + I+  +R   GL+ D     P    +D A   + 
Sbjct: 315 IGQGSENAKKYLADHPEIFDAIDHQVRVQYGLIEDEEGTTPTSVAEDLAPNQEV 368


>gi|227877183|ref|ZP_03995257.1| recombination protein A [Lactobacillus crispatus JV-V01]
 gi|256842737|ref|ZP_05548225.1| RecA protein [Lactobacillus crispatus 125-2-CHN]
 gi|256848953|ref|ZP_05554387.1| recombination protein [Lactobacillus crispatus MV-1A-US]
 gi|262045704|ref|ZP_06018668.1| RecA protein [Lactobacillus crispatus MV-3A-US]
 gi|293380182|ref|ZP_06626264.1| protein RecA [Lactobacillus crispatus 214-1]
 gi|312977739|ref|ZP_07789486.1| protein RecA [Lactobacillus crispatus CTV-05]
 gi|227863237|gb|EEJ70682.1| recombination protein A [Lactobacillus crispatus JV-V01]
 gi|256614157|gb|EEU19358.1| RecA protein [Lactobacillus crispatus 125-2-CHN]
 gi|256714492|gb|EEU29479.1| recombination protein [Lactobacillus crispatus MV-1A-US]
 gi|260573663|gb|EEX30219.1| RecA protein [Lactobacillus crispatus MV-3A-US]
 gi|290923226|gb|EFE00147.1| protein RecA [Lactobacillus crispatus 214-1]
 gi|310895478|gb|EFQ44545.1| protein RecA [Lactobacillus crispatus CTV-05]
          Length = 366

 Score =  351 bits (901), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 188/357 (52%), Positives = 266/357 (74%), Gaps = 2/357 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K  AL+AAL +I++ +GKGA+M++G +      I  V +GSL LD A+G+GG+P+
Sbjct: 1   MAKDEKQAALDAALKKIEKNFGKGAVMRMGEKADT--QISTVPTGSLALDAAIGVGGYPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQ
Sbjct: 59  GRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL
Sbjct: 119 PNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + +IS++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK    + 
Sbjct: 179 SGNISKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDVL 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+     I+DK+G+W+S+K  R+
Sbjct: 239 GNRVKIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKSDRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           GQGREN+K +L E+ +I ++I+  +RQ  G+   S+          +  ++     E
Sbjct: 299 GQGRENAKKYLEEHPDIYQDIQKQVRQAYGIDEKSIADREDPEKIKEKREEAKTEKE 355


>gi|58336988|ref|YP_193573.1| recombinase A [Lactobacillus acidophilus NCFM]
 gi|227903547|ref|ZP_04021352.1| recombination protein A [Lactobacillus acidophilus ATCC 4796]
 gi|76363334|sp|Q5FL82|RECA_LACAC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|58254305|gb|AAV42542.1| recombination protein [Lactobacillus acidophilus NCFM]
 gi|227868434|gb|EEJ75855.1| recombination protein A [Lactobacillus acidophilus ATCC 4796]
          Length = 363

 Score =  351 bits (901), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 193/362 (53%), Positives = 274/362 (75%), Gaps = 7/362 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K  AL+AAL +I++ +GKGA+M++G +      I  V +GSL LD A+G+GG+P+
Sbjct: 1   MAKDEKKAALDAALKKIEKNFGKGAVMRMGEKADT--QISTVPTGSLALDAAIGVGGYPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQ
Sbjct: 59  GRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL
Sbjct: 119 PNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + +IS++K I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   IK    + 
Sbjct: 179 SGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQIKQSGDVL 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+     I+DK+G+W+S+K  R+
Sbjct: 239 GNRVKIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKSDRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL----VADSLLQEPAINTKDD-ADKDDTDN 361
           GQGREN+K +L E+ +I + ++  +RQ  G+    +AD    E     +++ ++++ TDN
Sbjct: 299 GQGRENAKKYLEEHPDIYQKVQEQVRQAYGIDEKSIADRENPEKIKEKREETSEENKTDN 358

Query: 362 VE 363
            E
Sbjct: 359 SE 360


>gi|325697272|gb|EGD39158.1| recombination protein A [Streptococcus sanguinis SK160]
          Length = 382

 Score =  351 bits (901), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 200/376 (53%), Positives = 271/376 (72%), Gaps = 15/376 (3%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +D   +    ++ KAL+ AL  I++ +GKGAIM+LG +    + ++V+SSGSL LDIALG
Sbjct: 8   LDEISKKFGDERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALG 65

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++ 
Sbjct: 66  AGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNID 125

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MS
Sbjct: 126 ELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMS 185

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK
Sbjct: 186 QAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIK 245

Query: 241 ----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
               +KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  GELI +     I+ K+G
Sbjct: 246 GTGDEKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAG 305

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA-- 354
           AW+S+  +++GQG EN+K +L ++ E+ + I+  +R   GL+    L E   N  D    
Sbjct: 306 AWYSYNDEKIGQGSENAKKYLADHPEVFDEIDRQVRVRYGLIEGDDLAEVVGNKADSPVE 365

Query: 355 -------DKDDTDNVE 363
                  D DD   +E
Sbjct: 366 TMEEVTLDLDDAIEIE 381


>gi|157326965|gb|ABV44595.1| RecA [Burkholderia multivorans]
          Length = 308

 Score =  351 bits (901), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 218/309 (70%), Positives = 269/309 (87%), Gaps = 1/309 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GK +IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKRSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRSGSID 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI
Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  
Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  I
Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299

Query: 328 ESLLRQNAG 336
           E+ +R++ G
Sbjct: 300 ENRIRESLG 308


>gi|153006588|ref|YP_001380913.1| recA protein [Anaeromyxobacter sp. Fw109-5]
 gi|152030161|gb|ABS27929.1| recA protein [Anaeromyxobacter sp. Fw109-5]
          Length = 340

 Score =  351 bits (901), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 203/325 (62%), Positives = 263/325 (80%), Gaps = 1/325 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
            + DK KAL  AL+ I++ +GKG+IM+LG        + VV +GSLGLD+ALG+GG P+G
Sbjct: 3   KLSDKVKALGQALAGIEKQFGKGSIMRLGDGAEPA-PVAVVPTGSLGLDLALGVGGLPRG 61

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R+VEIYGPESSGKTTLALH IA+ Q+ GG  AF+DAEHALD  YAR+LGV L  LL+SQP
Sbjct: 62  RVVEIYGPESSGKTTLALHAIAEVQRQGGVAAFIDAEHALDVTYARRLGVSLAELLVSQP 121

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI + LVRSGA+D+IV+DSVAAL P+AEIEG+MG++  G+QARLMSQALRKLT
Sbjct: 122 DTGEQALEIAEQLVRSGAIDLIVVDSVAALVPKAEIEGEMGDAHMGVQARLMSQALRKLT 181

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           + +SR++ ++VFINQ+RMKIGV+FG+PETTTGG+ALKFY+SVRLDIRR+G +KD D + G
Sbjct: 182 AVVSRNQSLVVFINQIRMKIGVVFGNPETTTGGHALKFYASVRLDIRRIGQVKDGDQVVG 241

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           ++TRVKVVKNK+A PF++ EFD+ YG G+   GE +DLGV+   V+KSGA+F+  G+R+G
Sbjct: 242 SRTRVKVVKNKVAPPFREAEFDVRYGTGVDRHGEALDLGVERGAVEKSGAYFALDGERIG 301

Query: 308 QGRENSKIFLRENIEIAENIESLLR 332
           QGRE +  +LR N E  E + + +R
Sbjct: 302 QGRERAIEWLRANPEAYERLAARVR 326


>gi|322374227|ref|ZP_08048759.1| protein RecA [Streptococcus sp. C150]
 gi|321276831|gb|EFX53904.1| protein RecA [Streptococcus sp. C150]
          Length = 379

 Score =  351 bits (901), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 194/357 (54%), Positives = 265/357 (74%), Gaps = 6/357 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+G+MFG+PETT GG ALKFY+SVRLD+R    IK     KD   
Sbjct: 196 NKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDKKDQNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDLGIIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           GQG EN+K +L ++ EI E I+  +R + GL+             D+   +   N++
Sbjct: 316 GQGSENAKKYLADHPEIFEEIDHKVRVHYGLIEPDEEDVVEEKQVDETSDELVLNLD 372


>gi|149394992|gb|ABR27350.1| RecA [Burkholderia cepacia]
          Length = 315

 Score =  351 bits (901), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 217/310 (70%), Positives = 268/310 (86%), Gaps = 1/310 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 7   GSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 65

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 66  ELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 125

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 126 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 185

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 186 MFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 245

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 246 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 305

Query: 330 LLRQNAGLVA 339
            +R++ G  A
Sbjct: 306 RIRESLGSPA 315


>gi|296837439|gb|ADH59578.1| DNA recombinase [Burkholderia cenocepacia]
          Length = 308

 Score =  351 bits (901), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 218/309 (70%), Positives = 269/309 (87%), Gaps = 1/309 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQNAGLV 338
            +R++ G+V
Sbjct: 300 RIRESLGVV 308


>gi|224026225|ref|ZP_03644591.1| hypothetical protein BACCOPRO_02981 [Bacteroides coprophilus DSM
           18228]
 gi|224019461|gb|EEF77459.1| hypothetical protein BACCOPRO_02981 [Bacteroides coprophilus DSM
           18228]
          Length = 350

 Score =  351 bits (900), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 204/324 (62%), Positives = 264/324 (81%), Gaps = 2/324 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  +K KAL+AA+ +I++ +GKG+IM++G      + +EV+ +GS+ L+ ALG+GG+PKG
Sbjct: 21  NNSEKLKALQAAMDKIEKSFGKGSIMKMGDDH--VQEVEVIPTGSIALNAALGVGGYPKG 78

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQP
Sbjct: 79  RIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDIDNLWISQP 138

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++  G+QARLMSQALRKLT
Sbjct: 139 DNGEQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNRVGLQARLMSQALRKLT 198

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           S+IS++    +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   +KD + + G
Sbjct: 199 SAISKTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRANQLKDGEEVIG 258

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           NQ RVKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG +  I+ KSG+W+S+   +LG
Sbjct: 259 NQVRVKVVKNKVAPPFRKAEFDIMFGEGISRSGEIIDLGAELGIIKKSGSWYSYNDTKLG 318

Query: 308 QGRENSKIFLRENIEIAENIESLL 331
           QGR+ +K  +++N E+AE +E L+
Sbjct: 319 QGRDAAKQCIQDNPELAEELEGLI 342


>gi|149394998|gb|ABR27353.1| RecA [Burkholderia cepacia]
          Length = 312

 Score =  351 bits (900), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 216/308 (70%), Positives = 268/308 (87%), Gaps = 1/308 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 6   GSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 64

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 65  ELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 124

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 125 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 184

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 185 MFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 244

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 245 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 304

Query: 330 LLRQNAGL 337
            +R++ G+
Sbjct: 305 RIRESLGV 312


>gi|327467930|gb|EGF13420.1| recombination protein A [Streptococcus sanguinis SK330]
          Length = 382

 Score =  351 bits (900), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 200/376 (53%), Positives = 271/376 (72%), Gaps = 15/376 (3%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +D   +    ++ KAL+ AL  I++ +GKGAIM+LG +    + ++V+SSGSL LDIALG
Sbjct: 8   LDEISKKFGDERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALG 65

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++ 
Sbjct: 66  AGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNID 125

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MS
Sbjct: 126 ELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMS 185

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK
Sbjct: 186 QAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIK 245

Query: 241 ----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
               +KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  GELI +     I+ K+G
Sbjct: 246 GTGDEKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAG 305

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA-- 354
           AW+S+  +++GQG EN+K +L ++ E+ + I+  +R   GL+    L E   N  D    
Sbjct: 306 AWYSYNDEKIGQGSENAKKYLTDHPEVFDEIDRQVRVRYGLIEGDDLAEAVGNKADSPVE 365

Query: 355 -------DKDDTDNVE 363
                  D DD   +E
Sbjct: 366 TMEEVTLDLDDAIEIE 381


>gi|313679015|ref|YP_004056754.1| reca protein [Oceanithermus profundus DSM 14977]
 gi|313151730|gb|ADR35581.1| RecA protein [Oceanithermus profundus DSM 14977]
          Length = 335

 Score =  351 bits (900), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 192/326 (58%), Positives = 251/326 (76%), Gaps = 3/326 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   ++ KAL++ L QI++ +G GAIM+LG +    + +EV+ +GSL LD+ALGIGG P+
Sbjct: 1   MENNERQKALQSTLKQIEKRFGTGAIMRLGERPR--QEVEVIPTGSLALDLALGIGGIPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPES GKTTLALH +AQ+QK GG  AFVDAEHALD +YAR+LGVD+ NLL+SQ
Sbjct: 59  GRIIEIYGPESGGKTTLALHIVAQAQKAGGVAAFVDAEHALDPVYARQLGVDVDNLLLSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI ++LVRSGAVD+IV+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL
Sbjct: 119 PDTGEQALEIVELLVRSGAVDVIVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS-IKDKDSI 245
           T  +S+S    +FINQ+R K+GVM+G+PE TTGG ALKFYSS+RLD+RR G  IK  D  
Sbjct: 179 TGVLSKSNTSAIFINQIREKVGVMYGNPEVTTGGRALKFYSSIRLDVRRKGQPIKKGDQP 238

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
             N  RVKV KNK+A PF++ E ++ +G GI    +L+ + V   +++KSG+WFS+   R
Sbjct: 239 IANVVRVKVTKNKLAPPFREAELELYFGRGIDPVADLVTVAVDRGVIEKSGSWFSYGEVR 298

Query: 306 LGQGRENSKIFLRENIEIAENIESLL 331
           LGQG+E +  +LR N E+ E I + +
Sbjct: 299 LGQGKEKAADYLRANPEMIEEIRAKV 324


>gi|254430846|ref|ZP_05044549.1| protein RecA [Cyanobium sp. PCC 7001]
 gi|197625299|gb|EDY37858.1| protein RecA [Cyanobium sp. PCC 7001]
          Length = 419

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 195/322 (60%), Positives = 249/322 (77%), Gaps = 3/322 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL   L+QI+R +GKG+IM+LG    +   +E +S+G+L LD+ALG GG+PKGR+VE+Y
Sbjct: 48  KALGLVLNQIERNFGKGSIMRLGDASRMR--VETISTGALTLDLALG-GGYPKGRVVEVY 104

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTL LH IA+ QK GG  AFVDAEHALD +YA  LGVD++NLL+SQPDTGE A
Sbjct: 105 GPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAAALGVDIENLLVSQPDTGEMA 164

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI D LVRS AVDI+V+DSVAALTPRAEIEG+MG+   G QARLMSQA+RK+T +I +S
Sbjct: 165 LEIVDQLVRSAAVDIVVVDSVAALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNIGKS 224

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            C ++F+NQ+R KIGV +GSPETTTGGNALKFY+SVRLDIRR+ ++K      G + +VK
Sbjct: 225 GCTVIFLNQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRAKVK 284

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           V KNK+A PF+  EFDI++G GIS  G L+DL  +  +V + GAW+S++G  +GQGR+N+
Sbjct: 285 VAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVIRKGAWYSYEGDNIGQGRDNT 344

Query: 314 KIFLRENIEIAENIESLLRQNA 335
             +L +N E AE IE   RQ  
Sbjct: 345 ITWLEQNPEQAEEIERRTRQKL 366


>gi|296802988|gb|ADH51570.1| DNA recombinase [Burkholderia contaminans]
 gi|296837355|gb|ADH59536.1| DNA recombinase [Burkholderia contaminans]
          Length = 307

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 217/308 (70%), Positives = 268/308 (87%), Gaps = 1/308 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQNAGL 337
            +R++ G+
Sbjct: 300 RIRESLGV 307


>gi|71904445|ref|YP_281248.1| recombinase A [Streptococcus pyogenes MGAS6180]
 gi|123747737|sp|Q48QW7|RECA_STRPM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|71803540|gb|AAX72893.1| RecA [Streptococcus pyogenes MGAS6180]
          Length = 378

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 195/350 (55%), Positives = 266/350 (76%), Gaps = 6/350 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KDS  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGTTQIKGTGDQKDSSI 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK  E +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           GQG EN+K +L ++ E+ + I+  +R   GL+ +S  +   +   ++ D 
Sbjct: 316 GQGSENAKRYLADHPELFDEIDRKVRVKFGLLEESEEESAMVVASEEIDD 365


>gi|255533438|ref|YP_003093810.1| recA protein [Pedobacter heparinus DSM 2366]
 gi|255346422|gb|ACU05748.1| recA protein [Pedobacter heparinus DSM 2366]
          Length = 337

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 209/326 (64%), Positives = 259/326 (79%), Gaps = 2/326 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             DK KAL+  L ++++ YGKG +M+LG      E IE +S+GS+ LDIALGIGG PKGR
Sbjct: 4   NADKLKALQLTLDKLEKSYGKGTVMKLGDNA--VEPIESISTGSISLDIALGIGGVPKGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTTLA H IA++QK GG  A VDAEHA D  YA+KLGVD+ NLLISQPD
Sbjct: 62  IIEIYGPESSGKTTLATHIIAEAQKKGGIAAIVDAEHAFDKGYAKKLGVDVDNLLISQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GEQALEI D L+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+ ARLMSQALRKLT 
Sbjct: 122 NGEQALEIADNLIRSGAIDVIVIDSVAALVPKAEIEGEMGDSKMGLHARLMSQALRKLTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +IS++ C  +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IKD D ++GN
Sbjct: 182 TISKTGCCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRTSQIKDSDEVSGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + +VK+VKNK+A PF+  EFDIM+GEGIS  GE+IDLGV  +I+ K+G+WFS+   +LGQ
Sbjct: 242 RVKVKIVKNKVAPPFRIAEFDIMFGEGISKTGEIIDLGVDFNIIKKAGSWFSYGDTKLGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQN 334
           GR+  K  L +N E++E IE+ +R  
Sbjct: 302 GRDAVKQLLMDNPELSEEIEAKIRAE 327


>gi|148243210|ref|YP_001228367.1| recombinase A [Synechococcus sp. RCC307]
 gi|147851520|emb|CAK29014.1| RecA protein (recombinase A) [Synechococcus sp. RCC307]
          Length = 373

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 194/336 (57%), Positives = 255/336 (75%), Gaps = 3/336 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
            +    ++ KAL   L+QI+R +GKG+IM+LG    +   +E +S+G+L LD+ALG GG+
Sbjct: 7   NQAPAAEREKALGLVLNQIERNFGKGSIMRLGDASRMR--VETISTGALTLDLALG-GGY 63

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGR+VEIYGPESSGKTTL LH IA+ Q++GG  AFVDAEHALD +YA  LGVD++NLL+
Sbjct: 64  PKGRVVEIYGPESSGKTTLTLHAIAEVQRSGGVAAFVDAEHALDPVYAASLGVDIENLLV 123

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGE ALEI D LVRS AVD++V+DSVAALTPRAEIEG+MG+   G QARLMSQA+R
Sbjct: 124 SQPDTGEMALEIVDQLVRSAAVDLVVVDSVAALTPRAEIEGEMGDLAVGAQARLMSQAMR 183

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           K+T +I +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K    
Sbjct: 184 KITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRATE 243

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
             G + +VKV KNK+A PF+  EFDI++G GIS  G L+DL  +  +V + GAW+S+ G 
Sbjct: 244 EYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVVRKGAWYSYNGD 303

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340
            +GQGR+N+  +L +N E  + IE L RQ     AD
Sbjct: 304 NVGQGRDNTITWLEQNPEACQEIEQLTRQKLTAGAD 339


>gi|325695333|gb|EGD37233.1| recombination protein A [Streptococcus sanguinis SK150]
          Length = 384

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 198/367 (53%), Positives = 271/367 (73%), Gaps = 7/367 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +D   +    ++ KAL+ AL  I++ +GKGAIM+LG +    + ++V+SSGSL LDIALG
Sbjct: 8   LDEISKKFGDERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALG 65

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++ 
Sbjct: 66  AGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNID 125

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MS
Sbjct: 126 ELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMS 185

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK
Sbjct: 186 QAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIK 245

Query: 241 ----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
               +KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  GELI +     I+ K+G
Sbjct: 246 GTGDEKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAG 305

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL-VADSLLQEPAINTKDDAD 355
           AW+S+  +++GQG EN+K +L ++ E+ + I+  +R   GL V D    E  +  K D+ 
Sbjct: 306 AWYSYNDEKIGQGSENAKKYLADHPEVFDEIDRQVRVRYGLIVIDGDELEETVGNKADSP 365

Query: 356 KDDTDNV 362
            +  + V
Sbjct: 366 VETMEEV 372


>gi|161507192|ref|YP_001577146.1| recombinase A [Lactobacillus helveticus DPC 4571]
 gi|160348181|gb|ABX26855.1| Recombination protein [Lactobacillus helveticus DPC 4571]
          Length = 365

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 190/360 (52%), Positives = 270/360 (75%), Gaps = 6/360 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K  AL+AAL +I++ +GKGA+M++G +      I  V +GSL LD A+G+GG+P+
Sbjct: 1   MAKDEKKAALDAALKKIEKNFGKGAVMRMGEKADT--QISTVPTGSLALDAAIGVGGYPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQ
Sbjct: 59  GRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL
Sbjct: 119 PNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + +IS++K I +FINQ+R K+G+MFG+PETT GG ALKFYS++RL++RR   IK    + 
Sbjct: 179 SGTISKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDVI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+     I+DK+G+W+S+K  R+
Sbjct: 239 GNRVKIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKSDRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL----VADSLLQEPAINTKDDADKDDTDNV 362
           GQGREN+K +L ++ +I ++I+  +RQ  G+    VAD    E     +++A  + T   
Sbjct: 299 GQGRENAKKYLEDHPDIYQDIQQQVRQAYGIDKKSVADREDPEKIKKKREEAKAEKTAET 358


>gi|296837351|gb|ADH59534.1| DNA recombinase [Burkholderia contaminans]
          Length = 307

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 217/308 (70%), Positives = 268/308 (87%), Gaps = 1/308 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQNAGL 337
            +R++ G+
Sbjct: 300 RIRESLGV 307


>gi|254518999|ref|ZP_05131055.1| recombinase A [Clostridium sp. 7_2_43FAA]
 gi|226912748|gb|EEH97949.1| recombinase A [Clostridium sp. 7_2_43FAA]
          Length = 373

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 203/339 (59%), Positives = 274/339 (80%), Gaps = 4/339 (1%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           + QI++ +GKG++++LGS   +   IE +S+G L LDIALG+GG P+GRI+E+YGPESSG
Sbjct: 1   MKQIEKQFGKGSVIKLGSNPIM--DIETISTGCLALDIALGVGGVPRGRIIEVYGPESSG 58

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTT+ALH IA++QK GG  AF+DAEHALD  YA+ LGV  ++L++SQPDTGEQALEIT+ 
Sbjct: 59  KTTIALHIIAEAQKLGGAAAFIDAEHALDPAYAKNLGVSTEDLIVSQPDTGEQALEITEA 118

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           LVRS AVD++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT++I++S+C+++F
Sbjct: 119 LVRSNAVDVLVVDSVAALVPRAEIEGEMGDSHIGLQARLMSQALRKLTAAINKSQCVVIF 178

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           INQ+R KIG+MFG+PETTTGG ALKFY+SVRLDIR++ +IK  ++I G++ R+KV+KNK+
Sbjct: 179 INQLREKIGIMFGNPETTTGGRALKFYASVRLDIRKIDTIKVGENILGSRARIKVIKNKV 238

Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
           A PFKQ EFDIMY EGIS  G L+D+ V   I++KSG WFS+   RLGQGRENSK +L+E
Sbjct: 239 APPFKQAEFDIMYNEGISKEGNLLDIAVNEDIINKSGTWFSYNDIRLGQGRENSKAYLKE 298

Query: 320 NIEIAENIESLLRQNAG--LVADSLLQEPAINTKDDADK 356
           N ++A  +E+ +R+     LV D+ +QE  +  +D  +K
Sbjct: 299 NKDLALEVENAIREKHNLPLVKDTKVQEGEVKKEDKTNK 337


>gi|158338139|ref|YP_001519315.1| recombinase A [Acaryochloris marina MBIC11017]
 gi|158308380|gb|ABW29997.1| protein RecA [Acaryochloris marina MBIC11017]
          Length = 352

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 195/333 (58%), Positives = 256/333 (76%), Gaps = 3/333 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +  +K KAL+  +  ++R +GKG+IM+LG    +   IE +S+G+L LD+ALG GG P+G
Sbjct: 6   DASEKQKALDLVMKNVERTFGKGSIMRLGDATRM--QIETISTGALTLDLALG-GGLPRG 62

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R++EIYGPESSGKTT+ALH IAQ QK GG  AFVDAEHALD +YA  LGVD+  LL+SQP
Sbjct: 63  RVIEIYGPESSGKTTVALHAIAQIQKNGGVAAFVDAEHALDPVYAAALGVDVSELLVSQP 122

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D+GE ALEI D LVRS AVD++V+DSVAALTPRAEIEGDMG+S  G+QARLMSQALRK+T
Sbjct: 123 DSGEMALEIVDQLVRSSAVDLVVVDSVAALTPRAEIEGDMGDSHMGLQARLMSQALRKIT 182

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           S+IS+S   ++F+NQ+R KIGV +GSPE TTGGNALKFY+SVRLDIRR+ ++K    + G
Sbjct: 183 SNISKSGSTVIFLNQLRQKIGVTYGSPEVTTGGNALKFYASVRLDIRRIQTLKKGTDMFG 242

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
            + +VKV KNK+A PF+  EFDI++G+GIS  G L+D+  +  ++ + GAW+SF G  +G
Sbjct: 243 IRAKVKVAKNKVAPPFRIAEFDILFGQGISTTGCLVDMAEETDVIVRKGAWYSFDGNNIG 302

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           QGREN+  +  +N E AEN+E  +RQ   L A+
Sbjct: 303 QGRENTIQYFIDNPEFAENVEQQVRQKLELGAE 335


>gi|296837433|gb|ADH59575.1| DNA recombinase [Burkholderia contaminans]
          Length = 305

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 218/306 (71%), Positives = 267/306 (87%), Gaps = 1/306 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI
Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  
Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  I
Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299

Query: 328 ESLLRQ 333
           E+ +R+
Sbjct: 300 ENRIRE 305


>gi|157326979|gb|ABV44602.1| RecA [Burkholderia ambifaria]
          Length = 316

 Score =  351 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 216/309 (69%), Positives = 269/309 (87%), Gaps = 1/309 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+
Sbjct: 2   SIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAE 60

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IV
Sbjct: 61  LQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIV 120

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM
Sbjct: 121 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 180

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI
Sbjct: 181 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 240

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
           +YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ 
Sbjct: 241 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 300

Query: 331 LRQNAGLVA 339
           +R++ G+V 
Sbjct: 301 IRESLGVVT 309


>gi|225010383|ref|ZP_03700855.1| recA protein [Flavobacteria bacterium MS024-3C]
 gi|225005862|gb|EEG43812.1| recA protein [Flavobacteria bacterium MS024-3C]
          Length = 335

 Score =  351 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 205/329 (62%), Positives = 263/329 (79%), Gaps = 3/329 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
               K KAL+  L ++ + YGKGA+M++G   S+ + +EV+SSGSLGLD+ALG+GG+P+G
Sbjct: 4   EQASKLKALQLTLDKLDKTYGKGAVMKMGD--SVAQDVEVISSGSLGLDLALGVGGYPRG 61

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R++EIYGPESSGKTTL LH +A++QK GG  AF+DAEHA D  YA+KLGVD+ NL+ISQP
Sbjct: 62  RVIEIYGPESSGKTTLTLHAMAEAQKAGGIAAFIDAEHAFDRFYAQKLGVDIDNLIISQP 121

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI D L+RSGA+DI+VIDSVAALTP++EIEG+MG+S  G+ ARLMSQALRKLT
Sbjct: 122 DNGEQALEIADNLIRSGAIDIVVIDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLT 181

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSIT 246
            SIS++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IKD    + 
Sbjct: 182 GSISKTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKDTDGDVQ 241

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFK  EFDIMYG+G+S  GE+IDLGV   I+ KSG+WFS+   +L
Sbjct: 242 GNKTRVKVVKNKVAPPFKTAEFDIMYGQGVSKVGEVIDLGVDFEIIKKSGSWFSYGETKL 301

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNA 335
           GQGR+  K  L +N ++ + +E  +++  
Sbjct: 302 GQGRDAVKTLLLDNPDLMDELEGKIKEAL 330


>gi|193211955|ref|YP_001997908.1| recombinase A [Chlorobaculum parvum NCIB 8327]
 gi|238692669|sp|B3QQT8|RECA_CHLP8 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|193085432|gb|ACF10708.1| recA protein [Chlorobaculum parvum NCIB 8327]
          Length = 347

 Score =  351 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 200/324 (61%), Positives = 257/324 (79%), Gaps = 1/324 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + K L  A+  +++ +GKG+IM+LG   ++   ++ +S+GS+ LD ALG+GGFP+GR+ E
Sbjct: 19  RLKQLNLAIETLEKQFGKGSIMRLGDDSAVM-HVKAISTGSMALDYALGVGGFPRGRVTE 77

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH IA++QK GG  A VDAEHA D  YARKLGVD+ +LL+SQP++GE
Sbjct: 78  IYGPESSGKTTLALHAIAEAQKEGGIAALVDAEHAFDPTYARKLGVDINSLLVSQPESGE 137

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL I + LVRSGAVDI+V+DSVAAL P+AE+EG+MG+S+ G+QARLMSQALRKLT +IS
Sbjct: 138 QALSIVETLVRSGAVDIVVVDSVAALVPQAELEGEMGDSVVGLQARLMSQALRKLTGAIS 197

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S  + +FINQ+R KIGVM+GSPETTTGG ALKFYSSVRLDIRR+  IKD + + GN+T+
Sbjct: 198 KSSSVCIFINQLRDKIGVMYGSPETTTGGKALKFYSSVRLDIRRIAQIKDGEEVVGNRTK 257

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PFK  EFDI+YGEGIS  GELIDL V+  I+ K+GAWFS+  ++LGQGRE
Sbjct: 258 VKVVKNKVAPPFKIAEFDILYGEGISVLGELIDLAVEFGIIKKAGAWFSYGSEKLGQGRE 317

Query: 312 NSKIFLRENIEIAENIESLLRQNA 335
           N K  L+E+  +   I   +R   
Sbjct: 318 NVKRLLKEDETVRNTIRQQVRDTL 341


>gi|146319913|ref|YP_001199624.1| RecA protein [Streptococcus suis 98HAH33]
 gi|253750980|ref|YP_003024121.1| RecA recombinase (recombinase A) [Streptococcus suis SC84]
 gi|253752880|ref|YP_003026020.1| RecA recombinase (recombinase A) [Streptococcus suis P1/7]
 gi|253754705|ref|YP_003027845.1| RecA recombinase (recombinase A) [Streptococcus suis BM407]
 gi|330831913|ref|YP_004400738.1| RecA protein [Streptococcus suis ST3]
 gi|145690719|gb|ABP91224.1| RecA protein [Streptococcus suis 98HAH33]
 gi|251815269|emb|CAZ50834.1| RecA recombinase (recombinase A) [Streptococcus suis SC84]
 gi|251817169|emb|CAZ54890.1| RecA recombinase (recombinase A) [Streptococcus suis BM407]
 gi|251819125|emb|CAR44208.1| RecA recombinase (recombinase A) [Streptococcus suis P1/7]
 gi|292557523|gb|ADE30524.1| homologous recombination factor RecA [Streptococcus suis GZ1]
 gi|319757232|gb|ADV69174.1| RecA protein [Streptococcus suis JS14]
 gi|329306136|gb|AEB80552.1| RecA protein [Streptococcus suis ST3]
          Length = 383

 Score =  351 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 194/354 (54%), Positives = 266/354 (75%), Gaps = 6/354 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL +DIALG GG+PKGRI+
Sbjct: 19  ERKKALDDALKSIEKDFGKGAVMRLGERAE--QKVQVMSSGSLSIDIALGAGGYPKGRII 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 77  EIYGPESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +SI
Sbjct: 137 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 196

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K + +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+D+R    IK     KD   
Sbjct: 197 NKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVRGNTQIKGTGDKKDQNV 256

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T+VK+VKNK+A PFK+   +IMYGEGIS  GELI++G    I+ K+GAW+S+ G+++
Sbjct: 257 GKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKI 316

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           GQG EN+K FL +N  I + I+  +R + GL+    ++E A        ++  D
Sbjct: 317 GQGSENAKKFLADNPAIFDEIDRKIRVHYGLIEADGVEEVATEEAPVVAEEIQD 370


>gi|323466949|gb|ADX70636.1| Recombinase A [Lactobacillus helveticus H10]
          Length = 365

 Score =  351 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 191/360 (53%), Positives = 270/360 (75%), Gaps = 6/360 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K  AL+AAL +I++ +GKGA+M++G +      I  V +GSL LD A+G+GG+P+
Sbjct: 1   MAKDEKKAALDAALKKIEKNFGKGAVMRMGEKADT--QISTVPTGSLALDAAIGVGGYPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQ
Sbjct: 59  GRIIEVYGPESSGKTTVALHAVAEVQKHGGTAAYIDAENAMDPAYAEALGVDIDSLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL
Sbjct: 119 PNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + +IS++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK    + 
Sbjct: 179 SGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDVI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+     I+DK+G+W+S+K  R+
Sbjct: 239 GNRVKIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKSDRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL----VADSLLQEPAINTKDDADKDDTDNV 362
           GQGREN+K +L ++ +I ++I+  +RQ  G+    VAD    E     +++A  + T   
Sbjct: 299 GQGRENAKKYLEDHPDIYQDIQQQVRQAYGIDEKSVADREDPEKIKKKREEAKAEKTAET 358


>gi|325924502|ref|ZP_08186021.1| RecA protein [Xanthomonas gardneri ATCC 19865]
 gi|325544997|gb|EGD16332.1| RecA protein [Xanthomonas gardneri ATCC 19865]
          Length = 344

 Score =  351 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 219/349 (62%), Positives = 281/349 (80%), Gaps = 10/349 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL AALSQI++ +GKG++M++G +    E +EV+ +GSL LDIALGIGG PKGR+V
Sbjct: 4   NKKRALSAALSQIEKQFGKGSVMRMGDRA--IEAVEVIPTGSLMLDIALGIGGLPKGRVV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPE+SGKTTL L  IA+ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG
Sbjct: 62  EIYGPEASGKTTLTLQAIAECQKKGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRS +VDI+V+DSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I
Sbjct: 122 EQALEIADMLVRSSSVDIVVVDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            RS  ++VFINQ+R KIGVM    SPE TTGGNALKFY+SVRLDIRR+G+IK  D I GN
Sbjct: 182 KRSNTLVVFINQLRHKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT++KVVKNK+A PFKQV  +I+YGEGIS  GELID+GV+A +V+K+GAW+S+  +R+GQ
Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVEKAGAWYSYGEERIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           G++N++ +LR+N ++A  +E+ LR+           E      DDA+K+
Sbjct: 302 GKDNARTYLRDNPQVAIKLEAELREKF------QPAEAPREAGDDAEKE 344


>gi|32266132|ref|NP_860164.1| recombinase A [Helicobacter hepaticus ATCC 51449]
 gi|60393015|sp|Q7VIH2|RECA_HELHP RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|32262181|gb|AAP77230.1| RecA protein [Helicobacter hepaticus ATCC 51449]
          Length = 345

 Score =  351 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 211/348 (60%), Positives = 271/348 (77%), Gaps = 4/348 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M    + KA+E AL QI + +GKGA+++LG +    E I+ +S+GSLGLD+ALGIGG PK
Sbjct: 1   MVDEKRQKAIELALKQIDKAFGKGALVRLGDKQ--VEKIDSISTGSLGLDMALGIGGVPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTTL+L  +A+ Q+ GG CAF+DAEHALD  YA++LGVD +NLL+SQ
Sbjct: 59  GRIIEIYGPESSGKTTLSLQIVAECQRNGGICAFIDAEHALDVYYAKRLGVDTENLLVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI + L RSGAVD+IVIDSVAALTP+AEIEGDMG+   G+QARLMS ALRK+
Sbjct: 119 PDTGEQALEILETLTRSGAVDLIVIDSVAALTPKAEIEGDMGDQHVGLQARLMSHALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           T  + +    L+FINQ+RMKIG M +GSPETTTGGNALKFY+SVR+D+RRV ++K  D  
Sbjct: 179 TGVLHKMNATLIFINQIRMKIGTMGYGSPETTTGGNALKFYASVRIDVRRVATLKQNDQQ 238

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+T+ KVVKNK+A PF++ EFDIM+GEGIS  GE+ID G+K  I+DKSGAW S+  ++
Sbjct: 239 IGNRTKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGIKLDIIDKSGAWLSYNDKK 298

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           LGQGREN+KI L+EN  +A+ I + +++  G   D +L  P     D+
Sbjct: 299 LGQGRENAKIVLKENKSLADEITAKIKEQIG-SKDEILPLPDEPETDE 345


>gi|296837451|gb|ADH59584.1| DNA recombinase [Burkholderia vietnamiensis]
          Length = 307

 Score =  351 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 217/308 (70%), Positives = 269/308 (87%), Gaps = 1/308 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+
Sbjct: 1   SIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IV
Sbjct: 60  LQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM
Sbjct: 120 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 179

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI
Sbjct: 180 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 239

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
           +YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ 
Sbjct: 240 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 299

Query: 331 LRQNAGLV 338
           +R++ G+V
Sbjct: 300 IRESLGVV 307


>gi|296803116|gb|ADH51634.1| DNA recombinase [Burkholderia cepacia]
          Length = 304

 Score =  351 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 216/305 (70%), Positives = 265/305 (86%), Gaps = 1/305 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L
Sbjct: 1   QFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTL 59

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+
Sbjct: 60  QVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGS 119

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RM
Sbjct: 120 IDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRM 179

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++
Sbjct: 180 KIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRE 239

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
             FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA 
Sbjct: 240 AIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAR 299

Query: 326 NIESL 330
            IE+ 
Sbjct: 300 EIENR 304


>gi|132217|sp|P29225|RECA_ACHLA RecName: Full=Protein RecA; AltName: Full=Recombinase A
          Length = 331

 Score =  351 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 188/332 (56%), Positives = 252/332 (75%), Gaps = 2/332 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+   K +ALE AL QI++ +GKG+IM+LG        IE + SGS+ LDIALGIGG+P+
Sbjct: 1   MSDNKKQQALELALKQIEKQFGKGSIMKLGDGAD--HSIEAIPSGSIALDIALGIGGYPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E+YGPESSGKTTL LH +A +QK GGT AF+DAEHALD  YA+ LGVDL NL++SQ
Sbjct: 59  GRIIEVYGPESSGKTTLTLHAMASAQKQGGTVAFIDAEHALDPNYAKALGVDLDNLVLSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQAL+I + L++SG++D+IVIDSVAAL P AEI GDM  +  G+QAR+MSQA+RK+
Sbjct: 119 PDTGEQALDIAEALIKSGSIDMIVIDSVAALVPEAEIAGDMSANHVGLQARMMSQAMRKM 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           +  IS+S  + +FINQ+R K+GVMFG+PETT GG ALKF+SSVRL+IRR  +IK    + 
Sbjct: 179 SGVISKSNVVAIFINQIREKVGVMFGNPETTPGGRALKFFSSVRLEIRRAEAIKQGSEMI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G ++ VKVVK+K+A P K    DIMYG GIS  GE++DL V+ ++V+KSGAW++   ++L
Sbjct: 239 GIKSNVKVVKSKVAPPLKTASIDIMYGTGISRSGEVLDLSVELNLVNKSGAWYNIGEEKL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338
           GQGR+N+K +L +  E+   +E  +R +  L 
Sbjct: 299 GQGRDNAKQYLEDKPELLNELEKKVRTHFKLT 330


>gi|323350693|ref|ZP_08086354.1| recombination protein A [Streptococcus sanguinis VMC66]
 gi|322123113|gb|EFX94804.1| recombination protein A [Streptococcus sanguinis VMC66]
          Length = 382

 Score =  351 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 196/366 (53%), Positives = 272/366 (74%), Gaps = 7/366 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +D   +    ++ KAL+ AL  I++ +GKGAIM+LG +    + ++V+SSGSL LDIALG
Sbjct: 8   LDEISKKFGDERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALG 65

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++ 
Sbjct: 66  AGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNID 125

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MS
Sbjct: 126 ELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMS 185

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK
Sbjct: 186 QAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIK 245

Query: 241 ----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
               +KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  GELI +     I+ K+G
Sbjct: 246 GTGDEKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAG 305

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           AW+S+  +++GQG EN+K +L ++ E+ + I+  +R   GL+    L E  + +K ++  
Sbjct: 306 AWYSYNDEKIGQGSENAKKYLADHPEVFDEIDRQVRVRYGLIEGDDLAE-VVGSKAESPV 364

Query: 357 DDTDNV 362
           +  + V
Sbjct: 365 ETMEEV 370


>gi|162769935|emb|CAP58283.1| DNA recombinase [Burkholderia contaminans]
          Length = 321

 Score =  351 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 218/310 (70%), Positives = 269/310 (86%), Gaps = 1/310 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQNAGLVA 339
            +R++ G+V 
Sbjct: 300 RIRESLGVVT 309


>gi|325479365|gb|EGC82461.1| RecA protein [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 353

 Score =  351 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 207/350 (59%), Positives = 268/350 (76%), Gaps = 4/350 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+ A   I++ YGKGAIM++G    I   +  + +G++ LD+ALG+GG P+GR++
Sbjct: 4   EKQKALDQAFKNIEKKYGKGAIMKMGEAPKI--SVSAIPTGAVNLDMALGVGGIPRGRVI 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTLALH +A+ QK   TCAF+DAEHALD+ YA+ LGVD+ NL++SQPDTG
Sbjct: 62  EIFGPESSGKTTLALHIVAEDQKEDQTCAFIDAEHALDAEYAKNLGVDIDNLILSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ L+I + LVRSGAVD+IV+DSVAAL P+AEIEG+MG S  G+QARLMSQALR+LT  I
Sbjct: 122 EQGLDIAESLVRSGAVDLIVVDSVAALVPKAEIEGEMGASHVGLQARLMSQALRRLTGVI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++S   ++FINQ+R K+GVMFG+PETT GG ALKFYSSVRLDIRR+ +I   D   G++T
Sbjct: 182 AKSNTTVIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDIRRLKTITQGDESIGSRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK VEFDIMYG+GIS  G L+D  V   +VDK+G+WFS+K ++LGQGR
Sbjct: 242 RVKVVKNKVAPPFKVVEFDIMYGQGISKSGVLLDTAVDLDVVDKAGSWFSYKDEKLGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQ--NAGLVADSLLQEPAINTKDDADKDD 358
           E  K +L EN E+A  IE+ +R   NA    D   +E + +TKD  DK +
Sbjct: 302 EKVKDYLEENPELASQIEADVRATINAKDDEDESNEEDSKDTKDTEDKKE 351


>gi|320547644|ref|ZP_08041929.1| recombination protein A [Streptococcus equinus ATCC 9812]
 gi|320447719|gb|EFW88477.1| recombination protein A [Streptococcus equinus ATCC 9812]
          Length = 384

 Score =  351 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 199/368 (54%), Positives = 275/368 (74%), Gaps = 17/368 (4%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+S+GSL LDIALG GG+PKGRI+
Sbjct: 18  ERKKALDDALKLIEKDFGKGAVMRLGERAE--QKVQVMSTGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G++  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDNHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+R    IK     KDS  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRGNTQIKGTGDQKDSNI 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK  E +IMYGEGIS  GELI +     I++K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTGELIKIASDLDIINKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE------PAINTKDDADK---- 356
           GQG EN+K +L ++ ++ + I+  +R + GLV ++  ++       +  T + AD+    
Sbjct: 316 GQGSENAKKYLADHPDVFDEIDHKVRVHYGLVEETEDEKAANAADESAATSEKADEVVLD 375

Query: 357 -DDTDNVE 363
            DD   +E
Sbjct: 376 LDDAIEIE 383


>gi|289168670|ref|YP_003446939.1| RecA protein [Streptococcus mitis B6]
 gi|288908237|emb|CBJ23079.1| RecA protein [Streptococcus mitis B6]
          Length = 384

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 201/367 (54%), Positives = 273/367 (74%), Gaps = 9/367 (2%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +D   +    ++ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG
Sbjct: 8   LDEISKKFGAEREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALG 65

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++ 
Sbjct: 66  SGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNID 125

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MS
Sbjct: 126 ELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMS 185

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK
Sbjct: 186 QAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIK 245

Query: 241 ----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
                KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+G
Sbjct: 246 GTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIKKAG 305

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           AW+S+K +++GQG EN+K +L +N E+ + I+  +R   GL+     +E A N KD+A +
Sbjct: 306 AWYSYKDEKIGQGSENAKKYLADNPEVFDEIDHQVRVQFGLIDG---EEAAENKKDEAAQ 362

Query: 357 DDTDNVE 363
            D+ N E
Sbjct: 363 VDSVNEE 369


>gi|154498437|ref|ZP_02036815.1| hypothetical protein BACCAP_02426 [Bacteroides capillosus ATCC
           29799]
 gi|150272505|gb|EDM99690.1| hypothetical protein BACCAP_02426 [Bacteroides capillosus ATCC
           29799]
          Length = 374

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 216/373 (57%), Positives = 275/373 (73%), Gaps = 21/373 (5%)

Query: 8   NIVDKSKA--------------LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSL 53
           N+ DK KA              LE A++QI+R YGKG+IM+LG    I   +E + +GSL
Sbjct: 4   NMADKKKAAVESAAPAADKKKALETAMAQIERAYGKGSIMRLGDNAGIV--VEAIPTGSL 61

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
            LD+ALGIGG PKGRI+EIYGPESSGKTTLALH  A++QK GG  AF+DAEHALD  YAR
Sbjct: 62  ALDLALGIGGLPKGRIIEIYGPESSGKTTLALHVAAEAQKRGGEVAFIDAEHALDPTYAR 121

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
            LGVD++++LISQPDTGEQ LEI + LVRSGA+D++V+DSVAALTPRAEIEGDMG+S  G
Sbjct: 122 ALGVDIESMLISQPDTGEQGLEICEALVRSGAIDVVVVDSVAALTPRAEIEGDMGDSHVG 181

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
           + ARLMSQALRKL  SI+++ CI++FINQ+R K+GV++G+PE TTGG ALKFYSSVR+D+
Sbjct: 182 LLARLMSQALRKLAGSIAKTNCIVIFINQLREKVGVVYGNPEVTTGGRALKFYSSVRIDV 241

Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVD 293
           RR  ++K    + GN+TR KVVKNK+A PF++ EFDIMYGEGIS  GELIDLGVK  +V 
Sbjct: 242 RRTEALKSGSEVIGNRTRAKVVKNKVAPPFREAEFDIMYGEGISKVGELIDLGVKLDLVQ 301

Query: 294 KSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLL-RQNAGLVADSLLQEPAINTK- 351
           KSG+WF+    RLGQGR+ +K FLR+N E+A+ +E+ + R    L+ +          + 
Sbjct: 302 KSGSWFAMGDMRLGQGRDAAKQFLRDNPEVADKLEADIRRDAYKLMPNQAKAAARAAGRA 361

Query: 352 ---DDADKDDTDN 361
                 D +D DN
Sbjct: 362 VDVSAEDFEDEDN 374


>gi|296803082|gb|ADH51617.1| DNA recombinase [Burkholderia contaminans]
          Length = 306

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 217/307 (70%), Positives = 267/307 (86%), Gaps = 1/307 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+
Sbjct: 60  AELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG
Sbjct: 120 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  F
Sbjct: 180 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 239

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           DI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE
Sbjct: 240 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 299

Query: 329 SLLRQNA 335
           + +R++ 
Sbjct: 300 NRIRESL 306


>gi|288927334|ref|ZP_06421181.1| protein RecA [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330168|gb|EFC68752.1| protein RecA [Prevotella sp. oral taxon 317 str. F0108]
          Length = 341

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 207/323 (64%), Positives = 268/323 (82%), Gaps = 2/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+AA+S+I++ +GKG+IM++G +    E +EV+ +GS+GLD+ALG+GG+P+GRI+E
Sbjct: 15  KLKALQAAMSKIEKDFGKGSIMKMGDEQ--IENVEVIPTGSIGLDVALGVGGYPRGRIIE 72

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD GE
Sbjct: 73  IYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAEKLGVDVANLWISQPDNGE 132

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RS A+DI+V+DSVAALTP+ EIEGDMG++  G+QARLMSQALRKLTS+IS
Sbjct: 133 QALEIADQLIRSSAIDILVVDSVAALTPKKEIEGDMGDNNVGLQARLMSQALRKLTSTIS 192

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR+V SIKD D+I GNQ R
Sbjct: 193 KTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRKVTSIKDGDNIVGNQVR 252

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF++ EF+I +GEGIS  GE++DLGV+  I+ KSG+WFS+   +LGQGR+
Sbjct: 253 VKVVKNKVAPPFRKTEFEITFGEGISKVGEILDLGVEYEIIKKSGSWFSYNEAKLGQGRD 312

Query: 312 NSKIFLRENIEIAENIESLLRQN 334
            +K  L++N E+ E +E+ + Q 
Sbjct: 313 ATKNLLKDNPELCEELEAKIMQA 335


>gi|161788606|emb|CAP18003.2| DNA recombinase [Burkholderia lata]
          Length = 321

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 219/310 (70%), Positives = 270/310 (87%), Gaps = 1/310 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQNAGLVA 339
            +R++ G+VA
Sbjct: 300 RIRESLGVVA 309


>gi|168484239|ref|ZP_02709191.1| protein RecA [Streptococcus pneumoniae CDC1873-00]
 gi|172042496|gb|EDT50542.1| protein RecA [Streptococcus pneumoniae CDC1873-00]
          Length = 388

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 198/359 (55%), Positives = 271/359 (75%), Gaps = 7/359 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            ++ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG GG+PKGRI
Sbjct: 17  AEREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRI 74

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+
Sbjct: 75  IEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDS 134

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +S
Sbjct: 135 GEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGAS 194

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSI 245
           I+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     K++ 
Sbjct: 195 INKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKETN 254

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAW+S+K ++
Sbjct: 255 VGKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEK 314

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLV-ADSLLQEPAINTKDDADKDDTDNVE 363
           +GQG EN+K +L E+ EI + I+  +R   GL+  + + ++   N KD+  K++T N E
Sbjct: 315 IGQGSENAKKYLAEHPEIFDEIDKQVRSKFGLIDGEEVSEQDTENKKDEPKKEETVNEE 373


>gi|260434418|ref|ZP_05788388.1| protein RecA [Synechococcus sp. WH 8109]
 gi|260412292|gb|EEX05588.1| protein RecA [Synechococcus sp. WH 8109]
          Length = 370

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 192/328 (58%), Positives = 253/328 (77%), Gaps = 3/328 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +  ++ KAL   L QI+R +GKG+IM+LG    +   +E +S+G+L LD+ALG GG+PKG
Sbjct: 10  SSGERDKALNLVLGQIERNFGKGSIMRLGDASRMR--VETISTGALTLDLALG-GGYPKG 66

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R+VEIYGPESSGKTTL LH IA+ QK GG  AFVDAEHALD +YA  LGVD++NLL+SQP
Sbjct: 67  RVVEIYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASLGVDVENLLVSQP 126

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGE ALEI D LVRS AVD++V+DSVAALTPRAEIEG+MG+   G QARLMSQA+RK+T
Sbjct: 127 DTGEMALEIVDQLVRSAAVDLVVVDSVAALTPRAEIEGEMGDLAVGSQARLMSQAMRKIT 186

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            +I +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K      G
Sbjct: 187 GNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKKGTEEFG 246

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
            + +VKV KNK+A PF+  EFDI++G GIS  G L+DL  +  +V + GAW+S++G  +G
Sbjct: 247 IRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVVRKGAWYSYEGDNIG 306

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNA 335
           QGR+N+  ++ EN +    IE+L+RQ  
Sbjct: 307 QGRDNTISWMEENPDATATIETLVRQKL 334


>gi|15675866|ref|NP_270040.1| recombinase A [Streptococcus pyogenes M1 GAS]
 gi|71911612|ref|YP_283162.1| recombinase A [Streptococcus pyogenes MGAS5005]
 gi|73921302|sp|P0C095|RECA_STRP1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|13623100|gb|AAK34761.1| recombination protein [Streptococcus pyogenes M1 GAS]
 gi|71854394|gb|AAZ52417.1| RecA [Streptococcus pyogenes MGAS5005]
          Length = 378

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 195/350 (55%), Positives = 265/350 (75%), Gaps = 6/350 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KDS  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGTTQIKGTGDQKDSSI 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK  E +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           GQG EN+K +L ++ E+ + I+  +R   GL+ +S  +       ++ D 
Sbjct: 316 GQGSENAKRYLADHPELFDEIDLKVRVKFGLLEESEEESAMAVASEETDD 365


>gi|242133656|gb|ACS87939.1| RecA [Burkholderia cepacia]
          Length = 345

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 216/349 (61%), Positives = 278/349 (79%), Gaps = 4/349 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG IM +G  G + E I+VVS GSLGLDIALG+GG P+G 
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGLIMWMGD-GEVAEDIQVVSMGSLGLDIALGVGGLPRGW 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPE SGKTTL L  IA+ QK GGT  F+DAEHALD  Y  KLGV++  LLISQPD
Sbjct: 60  VVEIYGPELSGKTTLTLQVIAELQKIGGTAVFIDAEHALDVQYVSKLGVNVPELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG VD+IVID VAA   +AEIEG+MG+SLPG+QA LMSQALRKLTS
Sbjct: 120 TGEQALEITDALVRSGLVDMIVIDLVAAFVLKAEIEGEMGDSLPGLQACLMSQALRKLTS 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIG+MF +PETTTG N LKFY+SVRLDIRR+GSIK  + +  N
Sbjct: 180 TIKRTNCLVIFINQIRMKIGMMFSNPETTTGSNTLKFYASVRLDIRRIGSIKKNNEVISN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  G++I+L V+A IVDK+GAW+S+  +++GQ
Sbjct: 240 ETRVKVVKNKVSPPFRKAIFDILYGEGISRQGKIINLSVQAKIVDKAGAWYSYNSEKIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           G++N++ FLREN EIA  IE+ +R++  +VA   + + A N  +  D++
Sbjct: 300 GKDNAREFLRENPEIAREIENHIRESLSIVA---MPDGAGNEAEAMDEE 345


>gi|28896710|ref|NP_803060.1| recombinase A [Streptococcus pyogenes SSI-1]
 gi|94991376|ref|YP_599476.1| recombinase A [Streptococcus pyogenes MGAS10270]
 gi|94995287|ref|YP_603385.1| recombinase A [Streptococcus pyogenes MGAS10750]
 gi|315666320|ref|NP_665604.3| recombinase A [Streptococcus pyogenes MGAS315]
 gi|25453246|sp|Q8K5K0|RECA_STRP3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|122986801|sp|Q1J495|RECA_STRPF RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123257894|sp|Q1JEH7|RECA_STRPD RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|28811964|dbj|BAC64893.1| putative recombination protein [Streptococcus pyogenes SSI-1]
 gi|94544884|gb|ABF34932.1| RecA protein [Streptococcus pyogenes MGAS10270]
 gi|94548795|gb|ABF38841.1| RecA protein [Streptococcus pyogenes MGAS10750]
          Length = 378

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 194/350 (55%), Positives = 265/350 (75%), Gaps = 6/350 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KDS  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGTTQIKGTGDQKDSSI 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK  E +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           GQG EN+K +L ++ ++ + I+  +R   GL+ +S  +       ++ D 
Sbjct: 316 GQGSENAKRYLADHPQLFDEIDRKVRVKFGLLEESEEESAMAVASEETDD 365


>gi|21674742|ref|NP_662807.1| recombinase A [Chlorobium tepidum TLS]
 gi|6225924|sp|O52393|RECA_CHLTE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|2760912|gb|AAC38569.1| RecA protein [Chlorobaculum tepidum]
 gi|21647953|gb|AAM73149.1| recA protein [Chlorobium tepidum TLS]
          Length = 346

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 203/322 (63%), Positives = 256/322 (79%), Gaps = 1/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + K L  A+  +++ +GKGAIM+LG   ++   ++V+S+GS+ LD ALG+GG P+GR+ E
Sbjct: 18  RLKQLNLAIETLEKQFGKGAIMRLGDDSAVM-HVQVISTGSMALDYALGVGGLPRGRVTE 76

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH IA++QK GG  A VDAEHA D  YARKLGVD+  LL+SQP++GE
Sbjct: 77  IYGPESSGKTTLALHAIAEAQKNGGIAALVDAEHAFDPTYARKLGVDINALLVSQPESGE 136

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL I + LVRSGAVDIIVIDSVAAL P+AE+EG+MG+S+ G+QARLMSQALRKLT +IS
Sbjct: 137 QALSIVETLVRSGAVDIIVIDSVAALVPQAELEGEMGDSVVGLQARLMSQALRKLTGAIS 196

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S  + +FINQ+R KIGVM+GSPETTTGG ALKFYSSVRLDIR++  IKD + + GN+T+
Sbjct: 197 KSSSVCLFINQLRDKIGVMYGSPETTTGGKALKFYSSVRLDIRKIAQIKDGEELVGNRTK 256

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PFK  EFDI+YGEGIS  GELIDL V+  I+ KSGAWFS+  ++LGQGRE
Sbjct: 257 VKVVKNKVAPPFKTAEFDILYGEGISVLGELIDLAVEFGIIKKSGAWFSYGTEKLGQGRE 316

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
           N K  L+E+  +   I   +R 
Sbjct: 317 NVKKLLKEDETLRNTIRQQVRD 338


>gi|254410787|ref|ZP_05024565.1| protein RecA [Microcoleus chthonoplastes PCC 7420]
 gi|196182142|gb|EDX77128.1| protein RecA [Microcoleus chthonoplastes PCC 7420]
          Length = 361

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 191/333 (57%), Positives = 252/333 (75%), Gaps = 4/333 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  +K KAL   L+QI+R +GKG+IM+LG    +   +E +SSG++ LD+ALG GG P+G
Sbjct: 7   NSPEKEKALNLVLNQIERTFGKGSIMRLGDATRM--KVETISSGAITLDLALG-GGLPRG 63

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EIYGPESSGKTTLALH +A+ QK+GG  AFVDAEHALD  Y+  LGVD+ NLL+SQP
Sbjct: 64  RIIEIYGPESSGKTTLALHAVAEVQKSGGVAAFVDAEHALDPTYSSALGVDIANLLVSQP 123

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D+GE ALEI D LVRS AVDI+VIDSVAAL PRAEIEG+MG++  G+QARLMS+ALRK+ 
Sbjct: 124 DSGESALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEGEMGDTQVGLQARLMSKALRKIA 183

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-IT 246
            +I +S C ++F+NQ+R KIG+ +GSPE TTGGNALKFY SVRLDIRR+ ++K       
Sbjct: 184 GNIGKSGCTVIFLNQLRQKIGITYGSPEVTTGGNALKFYCSVRLDIRRIQTLKKASEGEY 243

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G + +VKV KNK+A PF+  EFDI++G+GIS  G L+DL  +  ++++ GAW+S+ G  +
Sbjct: 244 GIRAKVKVAKNKVAPPFRIAEFDIIFGQGISRLGCLVDLAEQTGVINRKGAWYSYNGDNI 303

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
            QGR+NS  ++ EN EIA  IE  +R+   + A
Sbjct: 304 AQGRDNSVRYIEENPEIAATIEQQVREQLDMGA 336


>gi|322517661|ref|ZP_08070526.1| recombination protein A [Streptococcus vestibularis ATCC 49124]
 gi|322123738|gb|EFX95323.1| recombination protein A [Streptococcus vestibularis ATCC 49124]
          Length = 379

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 201/363 (55%), Positives = 270/363 (74%), Gaps = 12/363 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+G+MFG+PETT GG ALKFY+SVRLD+R    IK     KD   
Sbjct: 196 NKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDKKDQNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDLGIIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA----DSLLQEPAINTKDD--ADKDDTD 360
           GQG EN+K +L ++ EI E I+  +R + GL+     D L      +T DD   D D T 
Sbjct: 316 GQGSENAKKYLADHPEIFEEIDHKVRVHYGLIETDEDDVLEGTQVEDTADDLVLDLDSTI 375

Query: 361 NVE 363
            +E
Sbjct: 376 EIE 378


>gi|293364283|ref|ZP_06611009.1| recombination protein A [Streptococcus oralis ATCC 35037]
 gi|306828848|ref|ZP_07462040.1| recombination protein A [Streptococcus mitis ATCC 6249]
 gi|291317129|gb|EFE57556.1| recombination protein A [Streptococcus oralis ATCC 35037]
 gi|304429026|gb|EFM32114.1| recombination protein A [Streptococcus mitis ATCC 6249]
          Length = 382

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 196/357 (54%), Positives = 269/357 (75%), Gaps = 6/357 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG GG+PKGRI
Sbjct: 18  ADREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRI 75

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+
Sbjct: 76  IEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDS 135

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +S
Sbjct: 136 GEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGAS 195

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSI 245
           I+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KD+ 
Sbjct: 196 INKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIKGTGDQKDTN 255

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAW+S+KG++
Sbjct: 256 VGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIQKAGAWYSYKGEK 315

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           +GQG EN+K +L ++ EI + I+  +R   GL+ D    + +   +  ++++ T ++
Sbjct: 316 IGQGSENAKKYLADHPEIFDAIDHQVRVQYGLIEDEEASDHSPVAEATSNQEVTLDL 372


>gi|78211933|ref|YP_380712.1| recombinase A [Synechococcus sp. CC9605]
 gi|123770811|sp|Q3AMM5|RECA_SYNSC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|78196392|gb|ABB34157.1| recA protein [Synechococcus sp. CC9605]
          Length = 374

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 192/325 (59%), Positives = 252/325 (77%), Gaps = 3/325 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL   L QI+R +GKG+IM+LG    +   +E +S+G+L LD+ALG GG+PKGR+V
Sbjct: 17  ERDKALNLVLGQIERNFGKGSIMRLGDASRMR--VETISTGALTLDLALG-GGYPKGRVV 73

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG  AFVDAEHALD +YA  LGVD++NLL+SQPDTG
Sbjct: 74  EIYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTG 133

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D LVRS AVD++V+DSVAALTPRAEIEG+MG+   G QARLMSQA+RK+T +I
Sbjct: 134 EMALEIVDQLVRSAAVDLVVVDSVAALTPRAEIEGEMGDLAVGAQARLMSQAMRKITGNI 193

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K      G + 
Sbjct: 194 GKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKKGTEEFGIRA 253

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV KNK+A PF+  EFDI++G GIS  G L+DL  +  +V + GAW+S++G  +GQGR
Sbjct: 254 KVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVVRKGAWYSYEGDNIGQGR 313

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
           +N+  ++ EN +    IE+L+RQ  
Sbjct: 314 DNTISWMEENPDATATIETLVRQKL 338


>gi|237753162|ref|ZP_04583642.1| recombinase A [Helicobacter winghamensis ATCC BAA-430]
 gi|229375429|gb|EEO25520.1| recombinase A [Helicobacter winghamensis ATCC BAA-430]
          Length = 343

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 209/331 (63%), Positives = 268/331 (80%), Gaps = 3/331 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KA+E A+ QI + +GKGA+++LG +    E I+ +S+GSLGLDIALGIGG PKGRI+
Sbjct: 6   NKQKAIELAIKQIDKAFGKGALIRLGDKP--VEKIDAISTGSLGLDIALGIGGIPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTLAL  +A+ QK+GG CAF+DAEHALD  YA++LGVD++NLL+SQPD G
Sbjct: 64  EVYGPESSGKTTLALQIVAECQKSGGICAFIDAEHALDVTYAKRLGVDVENLLVSQPDFG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L RSG VD+IVIDSVAALTP++EIEGDMG+   G+QARLMSQALRK+T  I
Sbjct: 124 EQALEILETLTRSGGVDLIVIDSVAALTPKSEIEGDMGDQHVGLQARLMSQALRKVTGVI 183

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIGVM +GSPETTTGGNALKFY+SVR+D+RR+ ++K  +   GN+
Sbjct: 184 HKMNTTVIFINQIRMKIGVMGYGSPETTTGGNALKFYASVRIDVRRIAALKQGEQNIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF+  EFDIM+GEGIS  GELID GVK  IVDKSGAW S+  ++LGQG
Sbjct: 244 VKAKVVKNKVAPPFRGAEFDIMFGEGISKEGELIDYGVKLDIVDKSGAWLSYGDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           +EN+K+FL+EN EIA+ IE  ++ +  +  D
Sbjct: 304 KENAKVFLKENPEIAQEIEEKIKASISITDD 334


>gi|323699013|ref|ZP_08110925.1| recA protein [Desulfovibrio sp. ND132]
 gi|323458945|gb|EGB14810.1| recA protein [Desulfovibrio desulfuricans ND132]
          Length = 355

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 200/348 (57%), Positives = 267/348 (76%), Gaps = 5/348 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + +AL  AL+ I+R +GKG+IM+L  + S    I  + +GS+GLDIALGIGG P+GR++E
Sbjct: 12  RKEALGTALTTIERKFGKGSIMRLDDEAS--HSIPFIPTGSIGLDIALGIGGVPRGRVIE 69

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPESSGKTTLALH IAQ+QK GG  AFVDAEHALD  YA++LGV    LLISQPD GE
Sbjct: 70  IFGPESSGKTTLALHIIAQAQKRGGAAAFVDAEHALDPNYAKRLGVKTDELLISQPDYGE 129

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D+LVRSGA+D++VIDSVAAL P++E+EG MGE+  G QARLMS ALRKLT +I 
Sbjct: 130 QALEIADLLVRSGALDVVVIDSVAALIPQSELEGQMGETQVGGQARLMSHALRKLTGTIH 189

Query: 192 RSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +S C+++FINQ+RMKI    +G+PETT+GGNALKFY+S RLDIRR+ ++KDK+   G + 
Sbjct: 190 KSNCVVIFINQIRMKIGMTGYGNPETTSGGNALKFYASCRLDIRRIQTLKDKEEAYGIRA 249

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PF+Q E D++YG+GIS  GE+ID+GV+  I++KSG+WF+F  ++LGQG+
Sbjct: 250 RIKVVKNKVAPPFRQAEVDVLYGQGISRMGEIIDMGVENGIIEKSGSWFAFGSEKLGQGK 309

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           EN +  L++N ++AE IE  L  + G     + ++ A  T D  D  +
Sbjct: 310 ENVRALLQDNPDLAEAIEEALMAHLG--FRDVPEDEAAPTPDAGDSGE 355


>gi|158338580|ref|YP_001519757.1| recombinase A [Acaryochloris marina MBIC11017]
 gi|158308821|gb|ABW30438.1| protein RecA [Acaryochloris marina MBIC11017]
          Length = 350

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 194/348 (55%), Positives = 260/348 (74%), Gaps = 4/348 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
            + +K KAL+  L  ++R +GKG+IM+LG    +   +E +SSG+L LD+ALG GG P+G
Sbjct: 6   EVSEKQKALDLVLKNVERSFGKGSIMRLGDAARM--QVETISSGALTLDLALG-GGLPRG 62

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R++EIYGPESSGKTT+ALH IAQ QK GG  AFVDAEHALD +YA  LGVD+  LL+SQP
Sbjct: 63  RVIEIYGPESSGKTTVALHAIAQIQKNGGVAAFVDAEHALDPVYAAALGVDVSELLVSQP 122

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D+GE ALEI D LVRS AVD++V+DSVAALTPRAEIEGDMG+S  G+QARLMSQALRK+T
Sbjct: 123 DSGEMALEIVDQLVRSSAVDLVVVDSVAALTPRAEIEGDMGDSHMGLQARLMSQALRKIT 182

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           S+I +S   ++F+NQ+R KIGV +GSPE TTGGNALKFY+SVRLDIRR+ ++K    + G
Sbjct: 183 SNICKSGSTVIFLNQLRQKIGVTYGSPEVTTGGNALKFYASVRLDIRRIQTLKKGTEMYG 242

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
            + +VKV KNK+A PF+  EFDI++G+GIS  G L+D+  + +I+ + GAW+SF G  +G
Sbjct: 243 IRAKVKVAKNKVAPPFRIAEFDILFGQGISTLGCLVDMAEETNIIVRKGAWYSFDGNNIG 302

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           QGR+N+  +  +N E  +++E  +RQ   L A+ +        + DA+
Sbjct: 303 QGRDNTIQYFADNPEFTDSVEQQVRQRLELGAE-VSANSVTAVEVDAE 349


>gi|296803074|gb|ADH51613.1| DNA recombinase [Burkholderia contaminans]
 gi|296803078|gb|ADH51615.1| DNA recombinase [Burkholderia contaminans]
          Length = 306

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 217/307 (70%), Positives = 267/307 (86%), Gaps = 1/307 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQNAG 336
            +R++ G
Sbjct: 300 RIRESLG 306


>gi|298244233|ref|ZP_06968039.1| recA protein [Ktedonobacter racemifer DSM 44963]
 gi|297551714|gb|EFH85579.1| recA protein [Ktedonobacter racemifer DSM 44963]
          Length = 372

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 213/349 (61%), Positives = 260/349 (74%), Gaps = 14/349 (4%)

Query: 1   MDYRKEMNIVDK------------SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVV 48
           M  +KE + VD+             KA+E AL QI+R +GKGAIM+LG    +   IE +
Sbjct: 1   MSTKKEKSTVDRNSTSSSGATTEREKAIEQALQQIERRFGKGAIMKLGDTAKV--QIEAI 58

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GS+ LD+ALGIGG P+GRI EIYGPESSGKTTL  H IA  QK GG  AF+DAEHA D
Sbjct: 59  STGSVALDLALGIGGLPRGRITEIYGPESSGKTTLCQHVIANVQKMGGYAAFIDAEHAFD 118

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YA + G+D  +LLISQPDTGEQALEI D LVRS AVD++V+DSVAAL PRAEIEG+MG
Sbjct: 119 RVYASRCGIDTNSLLISQPDTGEQALEIVDSLVRSNAVDVVVVDSVAALVPRAEIEGEMG 178

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRKLT +IS S C ++F NQ+R KIGVMFG+PETT GG ALKFY+S
Sbjct: 179 DSHVGLQARLMSQALRKLTGAISSSNCSVIFTNQLREKIGVMFGNPETTAGGKALKFYAS 238

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           VRLDIRR  SIK    + GN+TRV+VVKNK+A PFK  EFDIMY EGIS  G L+D+G++
Sbjct: 239 VRLDIRRTDSIKLGQDVVGNRTRVRVVKNKVAPPFKSAEFDIMYSEGISREGGLLDIGLE 298

Query: 289 ASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
             +V KSGAWF+    RLGQGREN+K FLR+N ++A+ I+  +R N   
Sbjct: 299 MGLVKKSGAWFTVGDIRLGQGRENAKEFLRQNTDVAQAIDDQIRNNMNT 347


>gi|296837353|gb|ADH59535.1| DNA recombinase [Burkholderia contaminans]
          Length = 306

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 217/307 (70%), Positives = 267/307 (86%), Gaps = 1/307 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQNAG 336
            +R++ G
Sbjct: 300 RIRESLG 306


>gi|242280582|ref|YP_002992711.1| recombinase A [Desulfovibrio salexigens DSM 2638]
 gi|242123476|gb|ACS81172.1| recA protein [Desulfovibrio salexigens DSM 2638]
          Length = 355

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 207/355 (58%), Positives = 271/355 (76%), Gaps = 9/355 (2%)

Query: 4   RKEMNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
           +K  N  D +  AL  AL+ I+R +GKG+IM+L         I V+ +GS+ LD+ALGIG
Sbjct: 3   KKNANPEDLRKAALSTALTTIERKFGKGSIMRL--DSEASHNIPVIPTGSISLDMALGIG 60

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G PKGRI E+YGPESSGKTTLALH IA+ Q+ GGT AFVDAEHALD  YA++LGV+   L
Sbjct: 61  GIPKGRITEVYGPESSGKTTLALHVIAECQRAGGTAAFVDAEHALDVKYAKRLGVNTDEL 120

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           LISQPD GEQALEITD+LVRSGAVDI++IDSVAAL P+AE+EG+MGE+  G QARLMS A
Sbjct: 121 LISQPDYGEQALEITDLLVRSGAVDIVIIDSVAALIPQAELEGNMGETQVGGQARLMSHA 180

Query: 183 LRKLTSSISRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           LRKLT +I +SK +++FINQ+RMKI    +GSPETT+GGNALKFYSSVRLDIR++ ++KD
Sbjct: 181 LRKLTGTIHKSKAVVLFINQIRMKIGMTGYGSPETTSGGNALKFYSSVRLDIRKIQTLKD 240

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
           K+ + G++TR+K++KNK+A PF++   DI+YG G+S  GEL+DLGV+  IVDKSGAW++F
Sbjct: 241 KEEVFGSRTRIKIIKNKVAPPFREALVDILYGTGMSREGELLDLGVEHGIVDKSGAWYAF 300

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
             +RLGQG+EN + FL E  E+ + IE  L  + G     + ++P +N  +  D+
Sbjct: 301 GSERLGQGKENVRQFLAETPELRQQIEDKLLIHLG-----MKEDPDMNVDEKVDE 350


>gi|149280019|ref|ZP_01886144.1| DNA recombination protein [Pedobacter sp. BAL39]
 gi|149229216|gb|EDM34610.1| DNA recombination protein [Pedobacter sp. BAL39]
          Length = 338

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 209/326 (64%), Positives = 258/326 (79%), Gaps = 2/326 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             DK KAL+  L ++++ YGKG +M+LG      E IE +S+GS+ LDIALGIGG PKGR
Sbjct: 4   NADKLKALQLTLDKLEKSYGKGTVMKLGDNP--VEPIESISTGSISLDIALGIGGVPKGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTTLA H IA++QK GG  A VDAEHA D  YA+KLGVD+ NLLISQPD
Sbjct: 62  IIEIYGPESSGKTTLATHIIAEAQKKGGLAAIVDAEHAFDKGYAKKLGVDVDNLLISQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GEQALEI D L+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+ ARLMSQALRKLT 
Sbjct: 122 NGEQALEIADNLIRSGAIDVIVIDSVAALVPKAEIEGEMGDSKMGLHARLMSQALRKLTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +IS++ C  +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IKD D + GN
Sbjct: 182 TISKTGCCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRTSQIKDSDEVAGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + +VK+VKNK+A PF+  EFDIM+GEGIS  GE+IDLGV  +I+ K+G+WFS+   +LGQ
Sbjct: 242 RVKVKIVKNKVAPPFRIAEFDIMFGEGISKTGEIIDLGVDFNIIKKAGSWFSYGDTKLGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQN 334
           GR+  K  L +N E++E IE+ +R  
Sbjct: 302 GRDAVKQLLLDNPELSEEIEAKIRAE 327


>gi|300088434|ref|YP_003758956.1| RecA protein [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528167|gb|ADJ26635.1| recA protein [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 342

 Score =  350 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 184/345 (53%), Positives = 249/345 (72%), Gaps = 3/345 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   K+    +K KALE A+  I++ +GKG+IM+L    S    ++V+ +GSL LD+ALG
Sbjct: 1   MSTDKQ--SAEKEKALEIAVGLIEKQFGKGSIMKLTDAASTV-AVDVIPTGSLALDLALG 57

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG P+GR+ EIYGPE SGKTTLA H IAQ QK GG   ++D EHA D  YA+  G+DL 
Sbjct: 58  VGGLPRGRVTEIYGPEGSGKTTLAQHVIAQCQKLGGKAFYIDVEHAFDPKYAKLCGIDLD 117

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
              I+QPD GE+AL+I + LVRSG  D++V+DSVAAL P+AE+EGDMG+S  G+QARLMS
Sbjct: 118 EFYIAQPDAGEEALDICEKLVRSGGADLVVVDSVAALVPKAELEGDMGDSHVGLQARLMS 177

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT++I  +   +VFINQ+R K+G+MFG+PE T GG ALKFYSSVR+D+RRV ++K
Sbjct: 178 QALRKLTATIGNTGTAVVFINQLREKVGIMFGNPEVTPGGRALKFYSSVRIDLRRVETLK 237

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             +   G+  + +VVKNK+A PF+  EFDIM+  GIS  G L+DLGV+  I+ K+GA+FS
Sbjct: 238 SGNIAIGSHVKARVVKNKVAPPFRVAEFDIMFDSGISREGNLLDLGVETGIIKKAGAFFS 297

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           +   RLGQGRE ++ FL +N +IA+ IE  +RQ+AG+       +
Sbjct: 298 WDETRLGQGREAARTFLSQNPDIADAIEQAIRQDAGVAQPPEETD 342


>gi|282878416|ref|ZP_06287202.1| RecA protein [Prevotella buccalis ATCC 35310]
 gi|281299402|gb|EFA91785.1| RecA protein [Prevotella buccalis ATCC 35310]
          Length = 341

 Score =  350 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 200/323 (61%), Positives = 264/323 (81%), Gaps = 2/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+AA+++I++ +GKGAIM++G +      +EV+ +GS+ LD+ALG+GG+P+GRI+E
Sbjct: 15  KLKALQAAMAKIEKDFGKGAIMRMGDEQ--IADVEVIPTGSIALDVALGVGGYPRGRIIE 72

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD GE
Sbjct: 73  IFGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDNGE 132

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RS A+DI+V+DSVAALTP+ EIEGDMG+S  G+QARLMSQALRKLTS+IS
Sbjct: 133 QALEIADQLIRSSAIDILVVDSVAALTPKKEIEGDMGDSNVGLQARLMSQALRKLTSTIS 192

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGV+FGSPETTTGGNALKFY+SVRLDIR+  S+KD D + GNQ R
Sbjct: 193 KTNTTCIFINQLREKIGVLFGSPETTTGGNALKFYASVRLDIRKKSSVKDGDEVLGNQVR 252

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF++ EF+I +GEGIS  GE++DLGV+  I+ KSG+W+S++  +L QGR+
Sbjct: 253 VKVVKNKVAPPFRKAEFEITFGEGISKIGEIVDLGVEYDIIKKSGSWYSYQDSKLAQGRD 312

Query: 312 NSKIFLRENIEIAENIESLLRQN 334
            +K  L++N E+ E +E  ++Q 
Sbjct: 313 ATKNLLKDNPELCEELEVKIKQA 335


>gi|70904864|gb|AAZ14011.1| RecA [Burkholderia multivorans]
          Length = 309

 Score =  350 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 217/309 (70%), Positives = 269/309 (87%), Gaps = 1/309 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+
Sbjct: 1   SIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVRSG++D+IV
Sbjct: 60  LQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRSGSIDMIV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM
Sbjct: 120 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 179

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI
Sbjct: 180 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 239

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
           +YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ 
Sbjct: 240 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 299

Query: 331 LRQNAGLVA 339
           +R++ G+ A
Sbjct: 300 IRESLGVAA 308


>gi|307720028|ref|YP_003891168.1| RecA protein [Sulfurimonas autotrophica DSM 16294]
 gi|306978121|gb|ADN08156.1| RecA protein [Sulfurimonas autotrophica DSM 16294]
          Length = 345

 Score =  350 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 203/344 (59%), Positives = 266/344 (77%), Gaps = 3/344 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K K+L+ A+ QI + +GKGA+M+LG +  +   I+ +S+GSLGLD+ALGIGG P+GR+
Sbjct: 3   ANKQKSLDLAMKQIDKAFGKGALMRLGDKDIV--PIQSISTGSLGLDLALGIGGVPQGRV 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL   A+ QK GG CAF+DAEHALD +YA+ LGVD+ NLL+SQPD 
Sbjct: 61  VEIYGPESSGKTTLALQITAECQKNGGVCAFIDAEHALDVVYAKNLGVDIDNLLVSQPDY 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQAL+I + + RSGA+D+IVIDSVAALTP+ E+EG+M +   G+QARLMS+ALRKLT  
Sbjct: 121 GEQALDIVETIARSGAIDLIVIDSVAALTPKVELEGEMNDQQVGVQARLMSKALRKLTGV 180

Query: 190 ISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +S+  C ++FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+D+RR+ S+K  +S  GN
Sbjct: 181 LSKMNCTVIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDVRRIASLKQGESQIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + + KV+KNK+A PF+Q EFDIM+GEGIS  GEL+D GVK  IVDKSGAWFS+   +LGQ
Sbjct: 241 RVKAKVIKNKVAPPFRQAEFDIMFGEGISKEGELVDYGVKLDIVDKSGAWFSYGETKLGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GREN K   ++  E+A  IE  ++Q  G+ +   +    I   D
Sbjct: 301 GRENVKAKFKDEPELASEIEEKIKQAMGMSSLMTMDTSEIAEAD 344


>gi|157326937|gb|ABV44581.1| RecA [Burkholderia multivorans]
          Length = 305

 Score =  350 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 217/306 (70%), Positives = 268/306 (87%), Gaps = 1/306 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVRSG++D+
Sbjct: 60  AELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRSGSIDM 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG
Sbjct: 120 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  F
Sbjct: 180 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 239

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           DI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE
Sbjct: 240 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 299

Query: 329 SLLRQN 334
           + +R++
Sbjct: 300 NRIRES 305


>gi|110639419|ref|YP_679628.1| recombinase A [Cytophaga hutchinsonii ATCC 33406]
 gi|122966573|sp|Q11QM8|RECA_CYTH3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|110282100|gb|ABG60286.1| DNA recombination protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 355

 Score =  350 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 209/330 (63%), Positives = 264/330 (80%), Gaps = 3/330 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+  + ++++ YGKG +M+L  +  +   + V+S+GSLGLDIALGIGG PKGRIV
Sbjct: 13  EKLKALQLTIDKLEKTYGKGTVMKLSDE--VVMDVPVISTGSLGLDIALGIGGLPKGRIV 70

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL++H IA++QK GG  AF+DAEHA D  YA KLG+D  NLLISQPD G
Sbjct: 71  EIYGPESSGKTTLSMHCIAEAQKAGGIAAFIDAEHAFDKTYAEKLGIDTTNLLISQPDNG 130

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L+RSGA+DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT +I
Sbjct: 131 EQALEIAEHLIRSGAIDIIVIDSVAALVPKAEIEGEMGDSKMGLQARLMSQALRKLTGAI 190

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT-GNQ 249
           +++ C  +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR+G IK+      GN+
Sbjct: 191 NKTGCCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGQIKESADNITGNR 250

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           T+VKVVKNKMA PFK +EFDIMYGEGIS  GE+IDLGV+  I++K+G+WFS++G +LGQG
Sbjct: 251 TKVKVVKNKMAPPFKVIEFDIMYGEGISKIGEIIDLGVELGIINKAGSWFSYEGTKLGQG 310

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVA 339
           R+  +    +N E+ + IE  +RQ   L  
Sbjct: 311 RDAVRTVFLDNPEMQDEIELKIRQKVQLSG 340


>gi|162447747|ref|YP_001620879.1| recombination protein [Acholeplasma laidlawii PG-8A]
 gi|189039587|sp|A9NGM3|RECA_ACHLI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|161985854|gb|ABX81503.1| recombination protein [Acholeplasma laidlawii PG-8A]
          Length = 331

 Score =  350 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 187/332 (56%), Positives = 252/332 (75%), Gaps = 2/332 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+   K +ALE AL QI++ +GKG+IM+LG        IE + SGS+ LDIALGIGG+P+
Sbjct: 1   MSDNKKQQALELALKQIEKQFGKGSIMKLGDGAD--HSIEAIPSGSIALDIALGIGGYPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E+YGPESSGKTTL LH +A +QK GGT AF+DAEHALD  YA+ LGVD+ NL++SQ
Sbjct: 59  GRIIEVYGPESSGKTTLTLHAMASAQKQGGTVAFIDAEHALDPNYAKALGVDIDNLVLSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQAL+I + L++SG++D+IVIDSVAAL P AEI GDM  +  G+QAR+MSQA+RK+
Sbjct: 119 PDTGEQALDIAEALIKSGSIDMIVIDSVAALVPEAEIAGDMSANHVGLQARMMSQAMRKM 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           +  IS+S  + +FINQ+R K+GVMFG+PETT GG ALKF+SSVRL+IRR  +IK    + 
Sbjct: 179 SGVISKSNVVAIFINQIREKVGVMFGNPETTPGGRALKFFSSVRLEIRRAEAIKQGSEMI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G ++ VKVVK+K+A P K    DIMYG GIS  GE++DL V+ ++V+KSGAW++   ++L
Sbjct: 239 GIKSNVKVVKSKVAPPLKTASIDIMYGTGISRSGEVLDLSVELNLVNKSGAWYNIGEEKL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338
           GQGR+N+K +L +  E+   +E  +R +  L 
Sbjct: 299 GQGRDNAKQYLEDKPELLNELEKKVRTHFKLT 330


>gi|86134785|ref|ZP_01053367.1| protein RecA [Polaribacter sp. MED152]
 gi|85821648|gb|EAQ42795.1| protein RecA [Polaribacter sp. MED152]
          Length = 335

 Score =  350 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 203/334 (60%), Positives = 263/334 (78%), Gaps = 4/334 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   KE     K KAL+  L ++ + YGKG++M+LG    + E ++ +SSGSLGLD+ALG
Sbjct: 1   MAADKEKAA--KLKALQLTLDKLDKTYGKGSVMKLGD--VVTEDVDAISSGSLGLDLALG 56

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG+P+GR++EIYGPESSGKTTL +H IA++QK GG  AF+DAEHA D  YA  LGVD+ 
Sbjct: 57  VGGYPRGRVIEIYGPESSGKTTLTIHAIAEAQKAGGIAAFIDAEHAFDKFYAENLGVDID 116

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL+ISQPD GEQALEI D L+RSGA+DI+VIDSVAALTP++EIEG+MG+S  G+ ARLMS
Sbjct: 117 NLIISQPDHGEQALEIADNLIRSGAIDIVVIDSVAALTPKSEIEGEMGDSKMGLHARLMS 176

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT +IS++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IK
Sbjct: 177 QALRKLTGTISKTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRRTQIK 236

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D D + GN T+VK+VKNK+A PF+  EFDIMYG+GIS  GE++D+GV+  IV KSG+WFS
Sbjct: 237 DGDRVIGNSTKVKIVKNKVAPPFQIAEFDIMYGQGISKVGEILDIGVELGIVKKSGSWFS 296

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
           +   +LGQGR+  K  +++N E+ E +E  ++  
Sbjct: 297 YGDTKLGQGRDAVKGLIKDNPELMEELEMKIKDA 330


>gi|93006838|ref|YP_581275.1| recombinase A [Psychrobacter cryohalolentis K5]
 gi|123386582|sp|Q1Q962|RECA_PSYCK RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|92394516|gb|ABE75791.1| recA protein [Psychrobacter cryohalolentis K5]
          Length = 352

 Score =  350 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 216/336 (64%), Positives = 269/336 (80%), Gaps = 2/336 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GK  IM LG   +    ++VVS+GSLGLDIALGIGG PKGRIVEIYGPESSGKT
Sbjct: 15  QIEKQFGKNTIMHLGDNSATL-DVDVVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKT 73

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ L  IA  QK GG CAF+DAEHALD +YARKLGV+  +LL+SQPD GEQALEITDMLV
Sbjct: 74  TMTLQAIAACQKQGGVCAFIDAEHALDPVYARKLGVNTDDLLLSQPDNGEQALEITDMLV 133

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D+IVIDSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN
Sbjct: 134 RSGAIDMIVIDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVLFIN 193

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+G++K+ D I GNQTRVKV+KNKMA 
Sbjct: 194 QIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRIGAVKNGDEIIGNQTRVKVIKNKMAP 253

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PF+Q EF+I YGEG +   E+IDLGV+   V K+G+W+S+  +++GQG+ NS +FL+EN 
Sbjct: 254 PFRQAEFEITYGEGTNHLAEVIDLGVEIGAVGKAGSWYSYGDEKIGQGKANSVLFLKENP 313

Query: 322 EIAENIESLLR-QNAGLVADSLLQEPAINTKDDADK 356
            IAE IE+ +R +  G   DS +       ++ A +
Sbjct: 314 AIAEEIEAKIRAEKLGTKDDSKVATVDKANEEQAAE 349


>gi|157326917|gb|ABV44571.1| RecA [Burkholderia cenocepacia]
          Length = 303

 Score =  350 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 216/304 (71%), Positives = 265/304 (87%), Gaps = 1/304 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI
Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299

Query: 324 AENI 327
           A  I
Sbjct: 300 AREI 303


>gi|324992642|gb|EGC24563.1| recombination protein A [Streptococcus sanguinis SK405]
 gi|327460045|gb|EGF06384.1| recombination protein A [Streptococcus sanguinis SK1]
 gi|327472191|gb|EGF17628.1| recombination protein A [Streptococcus sanguinis SK408]
 gi|327488635|gb|EGF20435.1| recombination protein A [Streptococcus sanguinis SK1058]
          Length = 382

 Score =  350 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 199/376 (52%), Positives = 271/376 (72%), Gaps = 15/376 (3%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +D   +    ++ KAL+ AL  I++ +GKGAIM+LG +    + ++V+SSGSL LDIALG
Sbjct: 8   LDEISKKFGDERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALG 65

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++ 
Sbjct: 66  AGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNID 125

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MS
Sbjct: 126 ELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMS 185

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK
Sbjct: 186 QAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIK 245

Query: 241 ----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
               +KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  GELI +     I+ K+G
Sbjct: 246 GTGDEKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAG 305

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA-- 354
           AW+S+  +++GQG EN+K +L ++ E+ + I+  +R   GL+    L E   N  +    
Sbjct: 306 AWYSYNDEKIGQGSENAKKYLADHPEVFDEIDRQVRVRYGLIEGYDLAEVVGNKAESPVE 365

Query: 355 -------DKDDTDNVE 363
                  D DD   +E
Sbjct: 366 TMEEVTLDLDDAIEIE 381


>gi|146298749|ref|YP_001193340.1| recA protein [Flavobacterium johnsoniae UW101]
 gi|146153167|gb|ABQ04021.1| recA protein [Flavobacterium johnsoniae UW101]
          Length = 335

 Score =  350 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 202/341 (59%), Positives = 268/341 (78%), Gaps = 6/341 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   KE     K KAL+  L ++ + YGKG +M++G +  +   +E +SSGSLG+D+ALG
Sbjct: 1   MSSDKEA----KLKALQLTLDKLDKTYGKGTVMKMGDRAIV--EVETISSGSLGVDLALG 54

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           + G+PKGRI+EIYGPESSGKTTL LH IA++QK GG  AF+DAEHA D  YA KL VD++
Sbjct: 55  VNGYPKGRIIEIYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAEHAFDRNYAEKLNVDIE 114

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL+ISQPD GEQALEI + L+RSGA+DI+VIDSVAALTP++EIEG+MG+S  G+ ARLMS
Sbjct: 115 NLIISQPDNGEQALEIAENLIRSGAIDIVVIDSVAALTPKSEIEGEMGDSKMGLHARLMS 174

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT +IS++ C + FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IK
Sbjct: 175 QALRKLTGTISKTNCTVFFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSAQIK 234

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D +++ GN+T+VK+VKNK+A PFK  EFDIMYGEG+S  GE++DL V+  IV K+G+WFS
Sbjct: 235 DGENVIGNRTKVKIVKNKVAPPFKTAEFDIMYGEGVSKTGEILDLAVEFDIVKKAGSWFS 294

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           +   +LGQGR+  K  +++N E+A+ +E  ++ +   +A++
Sbjct: 295 YGDTKLGQGRDAVKALIKDNPELADELEEKIKAHMKELANA 335


>gi|212694172|ref|ZP_03302300.1| hypothetical protein BACDOR_03698 [Bacteroides dorei DSM 17855]
 gi|237710193|ref|ZP_04540674.1| recombinase A [Bacteroides sp. 9_1_42FAA]
 gi|237727695|ref|ZP_04558176.1| recombinase A [Bacteroides sp. D4]
 gi|265751001|ref|ZP_06087064.1| RecA protein [Bacteroides sp. 3_1_33FAA]
 gi|212663238|gb|EEB23812.1| hypothetical protein BACDOR_03698 [Bacteroides dorei DSM 17855]
 gi|229434551|gb|EEO44628.1| recombinase A [Bacteroides dorei 5_1_36/D4]
 gi|229455655|gb|EEO61376.1| recombinase A [Bacteroides sp. 9_1_42FAA]
 gi|263237897|gb|EEZ23347.1| RecA protein [Bacteroides sp. 3_1_33FAA]
          Length = 347

 Score =  350 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 204/323 (63%), Positives = 263/323 (81%), Gaps = 2/323 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +K KAL+AA+ +I++ +GKG+IM++G      + +EV+ +GS+ L+ ALG+GG+PKGR
Sbjct: 19  NSEKLKALQAAMDKIEKTFGKGSIMKMGDDN--VQEVEVIPTGSIALNAALGVGGYPKGR 76

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD
Sbjct: 77  IIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPD 136

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GEQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++  G+QARLMSQALRKLTS
Sbjct: 137 NGEQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTS 196

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +IS++    +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   +KD + + GN
Sbjct: 197 AISKTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQLKDGEEVIGN 256

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT+VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG    I+ KSG+W+S+   +LGQ
Sbjct: 257 QTKVKVVKNKVAPPFRKAEFDIMFGEGISRAGEIIDLGADLGIIKKSGSWYSYNETKLGQ 316

Query: 309 GRENSKIFLRENIEIAENIESLL 331
           GR+ SK  +++N E+AE +E L+
Sbjct: 317 GRDASKQVIQDNPELAEELEGLI 339


>gi|260102484|ref|ZP_05752721.1| recombination protein A [Lactobacillus helveticus DSM 20075]
 gi|260083721|gb|EEW67841.1| recombination protein A [Lactobacillus helveticus DSM 20075]
          Length = 365

 Score =  350 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 190/360 (52%), Positives = 270/360 (75%), Gaps = 6/360 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K  AL+AAL +I++ +GKGA+M++G +      I  V +GSL LD A+G+GG+P+
Sbjct: 1   MAKDEKKAALDAALKKIEKNFGKGAVMRMGEKADT--QISTVPTGSLALDAAIGVGGYPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQ
Sbjct: 59  GRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL
Sbjct: 119 PNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + +IS++K I +FINQ+R K+G+MFG+PETT GG ALKFYS++RL++RR   IK    + 
Sbjct: 179 SGTISKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDMI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+     I+DK+G+W+S+K  R+
Sbjct: 239 GNRVKIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKSDRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL----VADSLLQEPAINTKDDADKDDTDNV 362
           GQGREN+K +L ++ +I ++I+  +RQ  G+    VAD    E     +++A  + T   
Sbjct: 299 GQGRENAKKYLEDHPDIYQDIQQQVRQAYGIDKKSVADREDPEKIKKKREEAKAEKTAET 358


>gi|47571294|gb|AAT35804.1| RecA [Mycobacterium terrae]
          Length = 304

 Score =  350 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 194/302 (64%), Positives = 247/302 (81%), Gaps = 2/302 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 5   PDREKALELAMAQIDKNFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA++LGVD  +LL+SQPDT
Sbjct: 63  VEIYGPESSGKTTVALHAVANAQADGGIAAFIDAEHALDPEYAKRLGVDTDSLLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D L+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 123 GEQALEIADTLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD     GN+
Sbjct: 183 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG GIS  G LID+GV    + KSG+WF++ G++LGQG
Sbjct: 243 TRVKVVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGSWFTYDGEQLGQG 302

Query: 310 RE 311
           +E
Sbjct: 303 KE 304


>gi|312863947|ref|ZP_07724184.1| RecA protein [Streptococcus vestibularis F0396]
 gi|311100513|gb|EFQ58719.1| RecA protein [Streptococcus vestibularis F0396]
          Length = 379

 Score =  350 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 194/351 (55%), Positives = 262/351 (74%), Gaps = 6/351 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+G+MFG+PETT GG ALKFY+SVRLD+R    IK     KD   
Sbjct: 196 NKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDKKDQNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDLGIIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           GQG EN+K +L ++ EI E I+  +R + GL+             +D   D
Sbjct: 316 GQGSENAKKYLADHPEIFEEIDHKVRVHYGLIETDEDDVVEGTQVEDTADD 366


>gi|78172764|gb|ABB29452.1| RecA [Mycobacterium jacuzzii]
          Length = 316

 Score =  350 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 193/308 (62%), Positives = 253/308 (82%), Gaps = 2/308 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           +M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +
Sbjct: 1   VMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTGEQALEI DMLVRSGA+DI+VI
Sbjct: 59  QAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDILVI 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMF
Sbjct: 119 DSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           GSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+TRVK+VKNK++ PFKQ EFDI+
Sbjct: 179 GSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNRTRVKIVKNKVSPPFKQAEFDIL 238

Query: 272 YGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLL 331
           YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG+EN++ FL EN+++A  IE  +
Sbjct: 239 YGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGKENARKFLLENVDVANEIEKKI 298

Query: 332 RQNAGLVA 339
           ++  G+ A
Sbjct: 299 KEKLGIGA 306


>gi|317154428|ref|YP_004122476.1| recA protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316944679|gb|ADU63730.1| recA protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 365

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 204/353 (57%), Positives = 266/353 (75%), Gaps = 3/353 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + +AL  AL+ I+R +GKGAIM+L  + S    I  + +GS+GLDIALGIGG P+GR++E
Sbjct: 12  RKEALGTALTTIERKFGKGAIMRLDDEAS--HAIPFIPTGSIGLDIALGIGGVPRGRVIE 69

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH +AQ+QK GG  AFVDAEHALD  YA++LGV    +LISQPD GE
Sbjct: 70  IYGPESSGKTTLALHIVAQAQKQGGNAAFVDAEHALDPGYAKRLGVKTDEMLISQPDYGE 129

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D+LVRSGAVD+IVIDSVAAL P+AE+EG MGE+  G QARLMS ALRKLT +I 
Sbjct: 130 QALEIADLLVRSGAVDVIVIDSVAALIPQAELEGQMGETQVGGQARLMSHALRKLTGTIH 189

Query: 192 RSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +S C+++FINQ+RMKI    +G+PETT+GGNALKFY+S RLDIRR+ ++KDKD   G + 
Sbjct: 190 KSNCVVIFINQIRMKIGMTGYGNPETTSGGNALKFYASCRLDIRRIQTLKDKDESYGIRA 249

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R+KVVKNK+A PF++   D++YG+GIS  GELID+GV+  I++KSG+WF+F  ++LGQG+
Sbjct: 250 RIKVVKNKVAPPFREALVDVLYGQGISRTGELIDMGVELGIIEKSGSWFAFGSEKLGQGK 309

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           EN +  L +N +IA  IE  L  + G   +    +   +T+D A     D+ E
Sbjct: 310 ENVRQLLEDNPDIAGAIEEKLMAHLGYRGEPAAGKLTRSTRDSAGDSTGDSTE 362


>gi|312127954|ref|YP_003992828.1| reca protein [Caldicellulosiruptor hydrothermalis 108]
 gi|312134802|ref|YP_004002140.1| reca protein [Caldicellulosiruptor owensensis OL]
 gi|312793176|ref|YP_004026099.1| reca protein [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312878042|ref|ZP_07737980.1| recA protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311774853|gb|ADQ04340.1| recA protein [Caldicellulosiruptor owensensis OL]
 gi|311777973|gb|ADQ07459.1| recA protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311795194|gb|EFR11585.1| recA protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|312180316|gb|ADQ40486.1| recA protein [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 356

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 201/346 (58%), Positives = 269/346 (77%), Gaps = 2/346 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M  +DK KAL+  + +I++ YGKGAIM+LG      E I+V+ +G+L LDIALG+GG P+
Sbjct: 1   MENLDKKKALDKVIMEIEKAYGKGAIMKLGEMAK--ENIDVIPTGALSLDIALGVGGVPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYG ESSGKTT+ALH IA++QK GG  AF+DAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 59  GRIVEIYGAESSGKTTIALHIIAEAQKMGGEAAFIDAEHALDPFYAKKLGVDINNLIVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+GEQALEI + LVRS A+D+IVIDSVAAL P+AEI+G+MGE+  G+QARLMSQALRKL
Sbjct: 119 PDSGEQALEIVEALVRSNAIDVIVIDSVAALVPQAEIDGEMGEAHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
               S++K  ++FINQ+R K+GVMFG+PETT GG ALKFY+SVRL++R+   IK +    
Sbjct: 179 AGITSKTKTTVIFINQLREKVGVMFGNPETTPGGRALKFYASVRLEVRKGEIIKSQGQPI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G++ +VKVVKNK+A PFK+ EFD++YGEGIS  G ++D+ V   ++ KSGAW+++ GQ++
Sbjct: 239 GSKVKVKVVKNKVAPPFKEAEFDLIYGEGISKEGNVLDVAVNIDVIQKSGAWYTYNGQKI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GQGREN+K FL+EN +I + I   +RQNA L  + +     I+ +D
Sbjct: 299 GQGRENAKQFLKENPDIMQEIIEKIRQNANLAFEKIKTTAEISDED 344


>gi|237750203|ref|ZP_04580683.1| recombinase A [Helicobacter bilis ATCC 43879]
 gi|229374097|gb|EEO24488.1| recombinase A [Helicobacter bilis ATCC 43879]
          Length = 346

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 203/344 (59%), Positives = 267/344 (77%), Gaps = 3/344 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KALE A+ Q+ + +GKG +++LG +    E I+ +S+GSLGLD+ALGIGG PKGRI
Sbjct: 5   PNKQKALENAMKQVDKAFGKGVLIRLGDKQ--VEKIDSISTGSLGLDLALGIGGIPKGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTL+L  IA+ Q+ GG CAF+DAEHALD  YA+ LGVD +NLL+SQPD 
Sbjct: 63  IEIYGPESSGKTTLSLQVIAECQRNGGVCAFIDAEHALDVYYAKNLGVDTENLLVSQPDN 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQAL I + +  SG VD+IV+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  
Sbjct: 123 GEQALSILETIACSGGVDLIVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGV 182

Query: 190 ISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +SR    ++FINQ+RMKIGVM +GSPETTTGGNALKFY+SVR+DIR+V ++K  DSI GN
Sbjct: 183 LSRMNTTVIFINQIRMKIGVMGYGSPETTTGGNALKFYASVRVDIRKVATLKQSDSIIGN 242

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + + KVVKNK+A PF++ EFDIM+GEGIS  GE+ID GVK  I+DKSGAW S+  +++GQ
Sbjct: 243 RAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIIDKSGAWLSYGDKKIGQ 302

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GREN+K FL+EN++IA  I + +++  G   + +     +   +
Sbjct: 303 GRENAKAFLKENVDIANEIAAKIKEQIGTSDEIMPLPDELEGSE 346


>gi|15901764|ref|NP_346368.1| recombinase A [Streptococcus pneumoniae TIGR4]
 gi|15903799|ref|NP_359349.1| recombinase A [Streptococcus pneumoniae R6]
 gi|111658830|ref|ZP_01409451.1| hypothetical protein SpneT_02000001 [Streptococcus pneumoniae
           TIGR4]
 gi|116516275|ref|YP_817162.1| recombinase A [Streptococcus pneumoniae D39]
 gi|168487417|ref|ZP_02711925.1| protein RecA [Streptococcus pneumoniae CDC1087-00]
 gi|169833810|ref|YP_001695302.1| recombinase A [Streptococcus pneumoniae Hungary19A-6]
 gi|194398747|ref|YP_002038531.1| recombinase A [Streptococcus pneumoniae G54]
 gi|221232668|ref|YP_002511822.1| RecA recombinase (recombinase A) [Streptococcus pneumoniae ATCC
           700669]
 gi|225861739|ref|YP_002743248.1| recombinase A [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230225|ref|ZP_06963906.1| recombinase A [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255896|ref|ZP_06979482.1| recombinase A [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503685|ref|YP_003725625.1| recombination protein A [Streptococcus pneumoniae TCH8431/19A]
 gi|61230229|sp|P0A451|RECA_STRPN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|61230230|sp|P0A452|RECA_STRR6 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|122277992|sp|Q04IM6|RECA_STRP2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226726297|sp|B5E2E0|RECA_STRP4 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238688361|sp|B1I8Q1|RECA_STRPI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|254790449|sp|B8ZNU7|RECA_STRPJ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|254790453|sp|C1CTH6|RECA_STRZT RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|47422|emb|CAA78955.1| RecA [Streptococcus pneumoniae]
 gi|899420|emb|CAA84072.1| RecA protein [Streptococcus pneumoniae]
 gi|14973445|gb|AAK76008.1| recA protein [Streptococcus pneumoniae TIGR4]
 gi|15459438|gb|AAL00560.1| DNA recombination/repair [Streptococcus pneumoniae R6]
 gi|116076851|gb|ABJ54571.1| recA protein [Streptococcus pneumoniae D39]
 gi|168996312|gb|ACA36924.1| protein RecA [Streptococcus pneumoniae Hungary19A-6]
 gi|183569758|gb|EDT90286.1| protein RecA [Streptococcus pneumoniae CDC1087-00]
 gi|194358414|gb|ACF56862.1| recA protein [Streptococcus pneumoniae G54]
 gi|220675130|emb|CAR69713.1| RecA recombinase (recombinase A) [Streptococcus pneumoniae ATCC
           700669]
 gi|225727717|gb|ACO23568.1| protein RecA [Streptococcus pneumoniae Taiwan19F-14]
 gi|298239280|gb|ADI70411.1| recombination protein A [Streptococcus pneumoniae TCH8431/19A]
 gi|301794893|emb|CBW37353.1| RecA recombinase (recombinase A) [Streptococcus pneumoniae INV104]
          Length = 388

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 197/359 (54%), Positives = 270/359 (75%), Gaps = 7/359 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            ++ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG GG+PKGRI
Sbjct: 17  AEREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRI 74

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+
Sbjct: 75  IEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDS 134

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +S
Sbjct: 135 GEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGAS 194

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSI 245
           I+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     K++ 
Sbjct: 195 INKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKETN 254

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAW+S+K ++
Sbjct: 255 VGKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEK 314

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLV-ADSLLQEPAINTKDDADKDDTDNVE 363
           +GQG EN+K +L E+ EI + I+  +R   GL+  + + ++   N KD+  K++  N E
Sbjct: 315 IGQGSENAKKYLAEHPEIFDEIDKQVRSKFGLIDGEEVSEQDTENKKDEPKKEEAVNEE 373


>gi|1350564|sp|P48293|RECA_SPIPL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|976445|gb|AAA75282.1| RecA [Arthrospira platensis NIES-39]
 gi|291567567|dbj|BAI89839.1| recombination protein RecA [Arthrospira platensis NIES-39]
          Length = 365

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 199/370 (53%), Positives = 264/370 (71%), Gaps = 12/370 (3%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M  + E    +K KAL + L+QI++ +GKG+I++LG    +   +E +SSG+L LD+ALG
Sbjct: 1   MASKTE--NSEKQKALNSVLNQIEKSFGKGSIVRLGDSARM--KVETISSGALTLDLALG 56

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG P+GR++EIYGPESSGKTTLALH IA+ QKTGG  AFVDAEHALD  YA  LGVD++
Sbjct: 57  -GGLPRGRVIEIYGPESSGKTTLALHAIAEIQKTGGIAAFVDAEHALDPTYAAALGVDIE 115

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NLL+SQPDTGE ALEI D LVRS AVDI+V+DSVAAL PRAEIEGDMG+S  G+QARLMS
Sbjct: 116 NLLVSQPDTGEMALEIVDQLVRSVAVDIVVVDSVAALVPRAEIEGDMGDSHMGLQARLMS 175

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRK+T +I +S C ++F+NQ+R KIG+++G+PETTTGGNALKFY+SVRLDIRR  ++K
Sbjct: 176 QALRKITGNIGKSGCTVIFLNQLRQKIGIVYGNPETTTGGNALKFYASVRLDIRRTQTLK 235

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
                 G + +VKV KNK+A PF+  EFDI++G+GIS  G LIDL  +  ++ + GAW+S
Sbjct: 236 KGSDEYGIRAKVKVAKNKVAPPFRIAEFDIIFGQGISTIGCLIDLAEETGVIKRKGAWYS 295

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA-------DSLLQEPAINTKDD 353
           +  + +GQGR+ +  +++EN    E I+  +R      A         L   P  +  D 
Sbjct: 296 YNNENIGQGRDRTITYMQENPAFTEEIDKRVRAALAGGAVVSATSVVKLDDNPDTDDHDV 355

Query: 354 ADKDDTDNVE 363
            D D+  + E
Sbjct: 356 EDIDENTDEE 365


>gi|291522145|emb|CBK80438.1| protein RecA [Coprococcus catus GD/7]
          Length = 363

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 217/350 (62%), Positives = 275/350 (78%), Gaps = 1/350 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+  +K KAL+AA+S+I++ +GKGAIM+LG +      +E V +GSL LD+ALG+GG PK
Sbjct: 1   MDNSEKLKALDAAISKIEKDFGKGAIMKLGDKSKNM-DVETVPTGSLSLDLALGLGGLPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTT+ LH +A+ QK GG   F+DAEHALD  YAR++GVD+ NL ISQ
Sbjct: 60  GRVVEIYGPESSGKTTVTLHMVAEVQKRGGIAGFIDAEHALDPSYARRIGVDIDNLYISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT+M+VRSGAVDIIV+DSVAAL P+AEI+GDMG+S  G+QARLMSQALRKL
Sbjct: 120 PDNGEQALEITEMMVRSGAVDIIVVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+ IS+S CI++FINQ+R K+GVMFGSPETTTGG ALKFYSS+R+DIRR+ +IK    I 
Sbjct: 180 TAIISKSNCIVIFINQLREKVGVMFGSPETTTGGRALKFYSSIRMDIRRIEAIKQGGEIV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFK+ EFDIM+G+GIS  G+++DL     IV+KSGAW+S+   ++
Sbjct: 240 GNRTRVKVVKNKVAPPFKEAEFDIMFGKGISREGDILDLAANTGIVNKSGAWYSYNDAKI 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           GQGREN+K + REN EI E IE  +R + GL A+   +       D   K
Sbjct: 300 GQGRENTKNYFRENPEIMEEIEHKVRAHFGLEAEGNDENAGGQRSDSVKK 349


>gi|112148589|gb|ABI13578.1| recombinase A [Lactobacillus helveticus CNRZ32]
 gi|328461861|gb|EGF34083.1| recombinase A [Lactobacillus helveticus MTCC 5463]
          Length = 365

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 190/360 (52%), Positives = 270/360 (75%), Gaps = 6/360 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K  AL+AAL +I++ +GKGA+M++G +      I  V +GSL LD A+G+GG+P+
Sbjct: 1   MAKDEKKAALDAALKKIEKNFGKGAVMRMGEKADT--QISTVPTGSLALDAAIGVGGYPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQ
Sbjct: 59  GRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL
Sbjct: 119 PNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + +IS++K I +FINQ+R K+G+MFG+PETT GG ALKFYS++RL++RR   IK    + 
Sbjct: 179 SGTISKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDMI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+     I+DK+G+W+S+K  R+
Sbjct: 239 GNRVKIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKSDRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL----VADSLLQEPAINTKDDADKDDTDNV 362
           GQGREN+K +L ++ +I ++I+  +RQ  G+    VAD    E     +++A  + T   
Sbjct: 299 GQGRENAKKYLEDHPDIYQDIQQQVRQAYGIDEKSVADREDPEKIKKKREEAKAEKTAET 358


>gi|302872165|ref|YP_003840801.1| recA protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302575024|gb|ADL42815.1| recA protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 356

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 200/346 (57%), Positives = 269/346 (77%), Gaps = 2/346 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M  +D+ KAL+  + +I++ YGKGAIM+LG      E I+V+ +G+L LDIALG+GG P+
Sbjct: 1   MENLDRKKALDKVIMEIEKAYGKGAIMKLGEMAK--ENIDVIPTGALSLDIALGVGGVPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYG ESSGKTT+ALH IA++QK GG  AF+DAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 59  GRIVEIYGAESSGKTTIALHIIAEAQKMGGEAAFIDAEHALDPFYAKKLGVDINNLIVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+GEQALEI + LVRS A+D+IVIDSVAAL P+AEI+G+MGE+  G+QARLMSQALRKL
Sbjct: 119 PDSGEQALEIVEALVRSNAIDVIVIDSVAALVPQAEIDGEMGEAHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
               S++K  ++FINQ+R K+GVMFG+PETT GG ALKFY+SVRL++R+   IK +    
Sbjct: 179 AGITSKTKTTVIFINQLREKVGVMFGNPETTPGGRALKFYASVRLEVRKGEIIKSQGQPI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G++ +VKVVKNK+A PFK+ EFD++YGEGIS  G ++D+ V   ++ KSGAW+++ GQ++
Sbjct: 239 GSKVKVKVVKNKVAPPFKEAEFDLIYGEGISKEGNVLDVAVNIDVIQKSGAWYTYNGQKI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GQGREN+K FL+EN +I + I   +RQNA L  + +     I+ +D
Sbjct: 299 GQGRENAKQFLKENPDIMQEIIEKIRQNANLAFEKIKTTAEISDED 344


>gi|71066287|ref|YP_265014.1| recombinase A [Psychrobacter arcticus 273-4]
 gi|123761733|sp|Q4FQX8|RECA_PSYA2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|71039272|gb|AAZ19580.1| recombinase A [Psychrobacter arcticus 273-4]
          Length = 352

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 217/336 (64%), Positives = 271/336 (80%), Gaps = 2/336 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GK  IM LG   +    ++VVS+GSLGLDIALGIGG PKGRIVEIYGPESSGKT
Sbjct: 15  QIEKQFGKNTIMHLGDDSAAL-DVDVVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKT 73

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ L  IA+ QK GG CAF+DAEHALD +YARKLGV+  +LL+SQPD GEQALEITDMLV
Sbjct: 74  TMTLQAIAECQKQGGVCAFIDAEHALDPVYARKLGVNTDDLLLSQPDNGEQALEITDMLV 133

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D+IVIDSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN
Sbjct: 134 RSGAIDMIVIDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVLFIN 193

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+G++K+ D I GNQTRVKV+KNKMA 
Sbjct: 194 QIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRIGAVKNGDEIIGNQTRVKVIKNKMAP 253

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PF+Q EF+I YGEG +   E+IDLGV+   V K+G+W+S+  +++GQG+ NS +FL+EN 
Sbjct: 254 PFRQAEFEITYGEGTNHLAEVIDLGVEIGAVGKAGSWYSYGDEKIGQGKANSVLFLKENP 313

Query: 322 EIAENIESLLR-QNAGLVADSLLQEPAINTKDDADK 356
            IAE IE+ +R +  G+  DS     A   ++ A +
Sbjct: 314 AIAEEIEAKIRAEKLGVKDDSKAAVVAETNEELASE 349


>gi|55820162|ref|YP_138604.1| recombinase A [Streptococcus thermophilus LMG 18311]
 gi|76363344|sp|Q5M6H2|RECA_STRT2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|55736147|gb|AAV59789.1| recombination protein A [Streptococcus thermophilus LMG 18311]
 gi|312277484|gb|ADQ62141.1| recombinase A [Streptococcus thermophilus ND03]
          Length = 384

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 195/356 (54%), Positives = 264/356 (74%), Gaps = 6/356 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+G+MFG+PETT GG ALKFY+SVRLD+R    IK     KD   
Sbjct: 196 NKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDKKDQNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDIGIIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           GQG EN+K +L ++ EI   I+  +R + GLV             +D   +DT + 
Sbjct: 316 GQGSENAKKYLADHPEIFAEIDHKVRVHYGLVELDEDDVVEDTQVEDTQVEDTSDE 371


>gi|218515602|ref|ZP_03512442.1| recombinase A [Rhizobium etli 8C-3]
          Length = 297

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 239/298 (80%), Positives = 276/298 (92%), Gaps = 1/298 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG PKGRI
Sbjct: 1   MDKSKALEAALSQIERSFGKGSIMKLGSNENVIE-IETISTGSLGLDIALGVGGLPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 60  IEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 120 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ
Sbjct: 180 ISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVIGNQ 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           TRVKVVKNKMA PFKQVEFDIMYGEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLG
Sbjct: 240 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLG 297


>gi|221069768|ref|ZP_03545873.1| recA protein [Comamonas testosteroni KF-1]
 gi|220714791|gb|EED70159.1| recA protein [Comamonas testosteroni KF-1]
          Length = 369

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 217/316 (68%), Positives = 273/316 (86%), Gaps = 1/316 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR++EIYGPESSGKT
Sbjct: 24  QIEKQFGKGTIMKLGE-GEAIEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKT 82

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK  GTCAF+DAEHALD+ YA+KLGV+L +LLISQPDTGEQALEI D LV
Sbjct: 83  TLTLQVIAEMQKQAGTCAFIDAEHALDTGYAQKLGVNLNDLLISQPDTGEQALEICDSLV 142

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD+IVIDSVAALTP+AEIEG+MG++LPG+QARLMSQALRKLT++I ++ C+++FIN
Sbjct: 143 RSGAVDLIVIDSVAALTPKAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFIN 202

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK  D   GN+T+VKVVKNK++ 
Sbjct: 203 QIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSP 262

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PFK  EFDI++GEGIS  GE++D+GV A I++KSGAW+++ G+++GQGR+NS+ FLREN 
Sbjct: 263 PFKTAEFDILFGEGISREGEILDMGVNAKILEKSGAWYAYNGEKIGQGRDNSREFLRENP 322

Query: 322 EIAENIESLLRQNAGL 337
            +A  IE+ +R + G+
Sbjct: 323 ALAIEIENKVRDSLGI 338


>gi|254882557|ref|ZP_05255267.1| recombinase A [Bacteroides sp. 4_3_47FAA]
 gi|294778525|ref|ZP_06743948.1| RecA protein [Bacteroides vulgatus PC510]
 gi|319642102|ref|ZP_07996768.1| RecA protein [Bacteroides sp. 3_1_40A]
 gi|254835350|gb|EET15659.1| recombinase A [Bacteroides sp. 4_3_47FAA]
 gi|294447787|gb|EFG16364.1| RecA protein [Bacteroides vulgatus PC510]
 gi|317386368|gb|EFV67281.1| RecA protein [Bacteroides sp. 3_1_40A]
          Length = 347

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 203/323 (62%), Positives = 263/323 (81%), Gaps = 2/323 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +K KAL+AA+ +I++ +GKG+IM++G      + +EV+ +GS+ L+ ALG+GG+PKGR
Sbjct: 19  NSEKLKALQAAMDKIEKTFGKGSIMKMGDDN--VQEVEVIPTGSIALNAALGVGGYPKGR 76

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD
Sbjct: 77  IIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPD 136

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GEQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++  G+QARLMSQALRKLTS
Sbjct: 137 NGEQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTS 196

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +IS++    +FINQ+R KIG+MFG+PETTTGGNALKFY+SVRLDIRR   +KD + + GN
Sbjct: 197 AISKTNTTCIFINQLREKIGIMFGNPETTTGGNALKFYASVRLDIRRSTQLKDGEEVIGN 256

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT+VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG    I+ KSG+W+S+   +LGQ
Sbjct: 257 QTKVKVVKNKVAPPFRKAEFDIMFGEGISRAGEIIDLGADLGIIKKSGSWYSYNETKLGQ 316

Query: 309 GRENSKIFLRENIEIAENIESLL 331
           GR+ SK  +++N E+AE +E L+
Sbjct: 317 GRDASKQVIQDNPELAEELEGLI 339


>gi|150004914|ref|YP_001299658.1| recombinase A [Bacteroides vulgatus ATCC 8482]
 gi|149933338|gb|ABR40036.1| RecA [Bacteroides vulgatus ATCC 8482]
          Length = 347

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 203/323 (62%), Positives = 263/323 (81%), Gaps = 2/323 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +K KAL+AA+ +I++ +GKG+IM++G      + +EV+ +GS+ L+ ALG+GG+PKGR
Sbjct: 19  NSEKLKALQAAMDKIEKTFGKGSIMKMGDDN--VQEVEVIPTGSIALNAALGVGGYPKGR 76

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD
Sbjct: 77  IIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPD 136

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GEQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++  G+QARLMSQALRKLTS
Sbjct: 137 NGEQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTS 196

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +IS++    +FINQ+R KIG+MFG+PETTTGGNALKFY+SVRLDIRR   +KD + + GN
Sbjct: 197 AISKTNTTCIFINQLREKIGIMFGNPETTTGGNALKFYASVRLDIRRSTQLKDGEEVIGN 256

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           QT+VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG    I+ KSG+W+S+   +LGQ
Sbjct: 257 QTKVKVVKNKVAPPFRKAEFDIMFGEGISRAGEIIDLGADLGIIKKSGSWYSYNETKLGQ 316

Query: 309 GRENSKIFLRENIEIAENIESLL 331
           GR+ SK  +++N E+AE +E L+
Sbjct: 317 GRDASKQVIQDNPELAEELEGLI 339


>gi|55822051|ref|YP_140492.1| recombinase A [Streptococcus thermophilus CNRZ1066]
 gi|76363343|sp|Q5M1Y2|RECA_STRT1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|55738036|gb|AAV61677.1| recombination protein A [Streptococcus thermophilus CNRZ1066]
          Length = 384

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 195/356 (54%), Positives = 264/356 (74%), Gaps = 6/356 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERLKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+G+MFG+PETT GG ALKFY+SVRLD+R    IK     KD   
Sbjct: 196 NKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDKKDQNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDIGIIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           GQG EN+K +L ++ EI   I+  +R + GLV             +D   +DT + 
Sbjct: 316 GQGSENAKKYLADHPEIFAEIDHKVRVHYGLVELDEDDVVEDTQVEDTQVEDTSDE 371


>gi|307708117|ref|ZP_07644585.1| protein RecA [Streptococcus mitis NCTC 12261]
 gi|307615902|gb|EFN95107.1| protein RecA [Streptococcus mitis NCTC 12261]
          Length = 376

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 201/367 (54%), Positives = 274/367 (74%), Gaps = 10/367 (2%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M ++K+    ++ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG
Sbjct: 1   MKFQKKFG-AEREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALG 57

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++ 
Sbjct: 58  SGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNID 117

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MS
Sbjct: 118 ELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMS 177

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK
Sbjct: 178 QAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIK 237

Query: 241 ----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
                KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+G
Sbjct: 238 GTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIKKAG 297

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           AW+S+K +++GQG EN+K +L +N EI + I+  +R   GL+    + E   + KD+A +
Sbjct: 298 AWYSYKDEKIGQGSENAKKYLADNPEIFDEIDHQVRVQFGLIDGEEIAE---SKKDEAAQ 354

Query: 357 DDTDNVE 363
            D+ N E
Sbjct: 355 VDSVNEE 361


>gi|209560226|ref|YP_002286698.1| recombinase A [Streptococcus pyogenes NZ131]
 gi|226693555|sp|P0C096|RECA_STRPZ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|209541427|gb|ACI62003.1| RecA protein [Streptococcus pyogenes NZ131]
          Length = 378

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 193/350 (55%), Positives = 265/350 (75%), Gaps = 6/350 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL++QPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLAQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KDS  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGTTQIKGTGDQKDSSI 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK  E +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           GQG EN+K +L ++ ++ + I+  +R   GL+ +S  +       ++ D 
Sbjct: 316 GQGSENAKRYLADHPQLFDEIDRKVRVKFGLLEESEEESAMAVASEETDD 365


>gi|209527175|ref|ZP_03275688.1| recA protein [Arthrospira maxima CS-328]
 gi|209492424|gb|EDZ92766.1| recA protein [Arthrospira maxima CS-328]
          Length = 366

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 195/357 (54%), Positives = 263/357 (73%), Gaps = 7/357 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M  + E    +K KAL + L+QI++ +GKG+I++LG    +   +E +SSG+L LD+ALG
Sbjct: 1   MASKTE--TSEKQKALNSVLNQIEKSFGKGSIVRLGDSARM--KVETISSGALTLDLALG 56

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG P+GR++EIYGPESSGKTTLALH IA+ QKTGG  AFVDAEHALD  YA  LGVD++
Sbjct: 57  -GGLPRGRVIEIYGPESSGKTTLALHAIAEIQKTGGIAAFVDAEHALDPTYAAALGVDIE 115

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NLL+SQPDTGE ALEI D LVRS AVDI+V+DSVAAL PRAEIEGDMG+S  G+QARLMS
Sbjct: 116 NLLVSQPDTGEMALEIVDQLVRSVAVDIVVVDSVAALVPRAEIEGDMGDSHMGLQARLMS 175

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRK+T +I +S C ++F+NQ+R KIG+++G+PETTTGGNALKFY+SVRLDIRR  ++K
Sbjct: 176 QALRKITGNIGKSGCTVIFLNQLRQKIGIVYGNPETTTGGNALKFYASVRLDIRRTQTLK 235

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
                 G + +VKV KNK+A PF+  EFDI++G+GIS  G LIDL  +  ++ + G+W+S
Sbjct: 236 KGSDEYGIRAKVKVAKNKVAPPFRIAEFDIIFGQGISTIGCLIDLAEETGVIKRKGSWYS 295

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           +    +GQGR+ +  ++ EN E  + I+  +R    L   +++   ++   DD D +
Sbjct: 296 YNNDNIGQGRDRTITYMEENPEFTKKIDDEVRAA--LAGGAVVSATSVVKLDDNDVE 350


>gi|319946053|ref|ZP_08020302.1| recombination protein A [Streptococcus australis ATCC 700641]
 gi|319747861|gb|EFW00106.1| recombination protein A [Streptococcus australis ATCC 700641]
          Length = 380

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 197/374 (52%), Positives = 267/374 (71%), Gaps = 13/374 (3%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +D   +    ++ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG
Sbjct: 8   LDDISKKFGDEREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALG 65

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++ 
Sbjct: 66  AGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNID 125

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPD+GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+GD+G+S  G+QAR+MS
Sbjct: 126 ELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMS 185

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK
Sbjct: 186 QAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIK 245

Query: 241 ----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
                KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     ++ K+G
Sbjct: 246 GTGDQKDTNVGKETKIKVVKNKVAPPFKEAMVEIMYGEGISRTGELLKIATDLDLIQKAG 305

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA-- 354
           AW+S+ G+++GQG EN+K +L ++ EI + I+  +R   GL+ D           +    
Sbjct: 306 AWYSYNGEKIGQGSENAKKYLADHPEIFDEIDHQVRVRFGLIDDDTAVVAQDEVAESPLV 365

Query: 355 -----DKDDTDNVE 363
                D DD   +E
Sbjct: 366 EEVTLDLDDAIEIE 379


>gi|238926159|ref|ZP_04657919.1| recombination protein A [Selenomonas flueggei ATCC 43531]
 gi|238885839|gb|EEQ49477.1| recombination protein A [Selenomonas flueggei ATCC 43531]
          Length = 385

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 207/348 (59%), Positives = 264/348 (75%), Gaps = 3/348 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + +ALE AL  I++ +GKGAIM+LG   +    IEV+S+G L LDIALG+GG P+GRI+E
Sbjct: 23  REEALENALRNIEKAHGKGAIMRLGEAKANMN-IEVISTGILPLDIALGVGGIPRGRIIE 81

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           ++GPESSGKTT+ALH IA++QK GG  AF+DAEHALD  YARKLGV++++LL+SQPDTGE
Sbjct: 82  VFGPESSGKTTVALHMIAEAQKAGGIAAFIDAEHALDPEYARKLGVNIEDLLVSQPDTGE 141

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LV S A+DIIV+DSVAAL P++EI+GDMG S  G+QARLMSQA+RKLT  IS
Sbjct: 142 QALEIVDALVHSAAIDIIVVDSVAALVPKSEIDGDMGASAVGLQARLMSQAMRKLTGIIS 201

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +++   VFINQ+R KIGV +G+PE TTGG ALKFY+SVR+D+RR  SIK      GN+TR
Sbjct: 202 KTRTAAVFINQLREKIGVTYGNPEVTTGGRALKFYASVRIDVRRADSIKQGTESLGNRTR 261

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
            ++VKNK+A PFK  EFDIMYGEG+S  G +ID+GV+  IVDKSGAWFS+ G RLGQG+E
Sbjct: 262 ARIVKNKVAPPFKTAEFDIMYGEGVSRLGSIIDMGVELDIVDKSGAWFSYGGTRLGQGKE 321

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           N+K  L E  E+   IE  +R    L+A+    +     K  A  ++T
Sbjct: 322 NAKATLEERPEMITEIEEKIRTK--LLAEGEKPKKKGTGKKTAPFEET 367


>gi|221194844|ref|ZP_03567901.1| protein RecA [Atopobium rimae ATCC 49626]
 gi|221185748|gb|EEE18138.1| protein RecA [Atopobium rimae ATCC 49626]
          Length = 364

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 205/355 (57%), Positives = 271/355 (76%), Gaps = 3/355 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           + +      ++ + LE   S+I++ +GKG+IM+LG  G  F  I+ + +GS+ LD ALGI
Sbjct: 9   EIKPRTTGEERDQVLETTTSEIEKKFGKGSIMRLGDGGPSF-DIQSIPTGSIALDAALGI 67

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GRI+EIYGPESSGKTTL+L  +A++Q  GG  AF+DAEHALD  YA ++GVD+  
Sbjct: 68  GGVPRGRIIEIYGPESSGKTTLSLEILAEAQALGGVVAFIDAEHALDPGYAARIGVDIDE 127

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           +LISQPDTGEQALEI DMLVRSGA+D++VIDSVAAL PRAEIEG++G+S  G+QARLMSQ
Sbjct: 128 VLISQPDTGEQALEICDMLVRSGAIDVVVIDSVAALVPRAEIEGEIGDSSVGLQARLMSQ 187

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKL  S+S+S    +FINQ+R KIGVMFG+PETT+GG ALKF+SSVR+DIRR+ SIK 
Sbjct: 188 ALRKLAGSLSKSNTTCIFINQLREKIGVMFGNPETTSGGRALKFFSSVRMDIRRIDSIKV 247

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
              + GN+ RVKVVKNK+A PFKQ EFDIMYG+GIS  G ++D+ V+  IV+KSG+WF++
Sbjct: 248 NGDVVGNRVRVKVVKNKVAPPFKQAEFDIMYGKGISKEGSILDMAVEEEIVNKSGSWFTY 307

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADS--LLQEPAINTKDDA 354
           +G+RLGQGRE +K FL EN ++ E I+  +R   GL+ D    +  P + T+ + 
Sbjct: 308 EGERLGQGREAAKTFLLENPQLMEEIDHKVRLAVGLIEDEDTAVGSPVMPTETEV 362


>gi|148985525|ref|ZP_01818714.1| recombinase A [Streptococcus pneumoniae SP3-BS71]
 gi|148993194|ref|ZP_01822760.1| recA protein [Streptococcus pneumoniae SP9-BS68]
 gi|148998478|ref|ZP_01825919.1| recombinase A [Streptococcus pneumoniae SP11-BS70]
 gi|149003604|ref|ZP_01828469.1| recombinase A [Streptococcus pneumoniae SP14-BS69]
 gi|149007422|ref|ZP_01831065.1| recombinase A [Streptococcus pneumoniae SP18-BS74]
 gi|168490071|ref|ZP_02714270.1| protein RecA [Streptococcus pneumoniae SP195]
 gi|168492084|ref|ZP_02716227.1| protein RecA [Streptococcus pneumoniae CDC0288-04]
 gi|168494724|ref|ZP_02718867.1| protein RecA [Streptococcus pneumoniae CDC3059-06]
 gi|168576650|ref|ZP_02722516.1| protein RecA [Streptococcus pneumoniae MLV-016]
 gi|182684884|ref|YP_001836631.1| recombinase A [Streptococcus pneumoniae CGSP14]
 gi|225855433|ref|YP_002736945.1| recombinase A [Streptococcus pneumoniae JJA]
 gi|225857522|ref|YP_002739033.1| recombinase A [Streptococcus pneumoniae P1031]
 gi|225859704|ref|YP_002741214.1| recombinase A [Streptococcus pneumoniae 70585]
 gi|237650969|ref|ZP_04525221.1| recombinase A [Streptococcus pneumoniae CCRI 1974]
 gi|237821646|ref|ZP_04597491.1| recombinase A [Streptococcus pneumoniae CCRI 1974M2]
 gi|303254126|ref|ZP_07340241.1| recombinase A [Streptococcus pneumoniae BS455]
 gi|303260322|ref|ZP_07346292.1| recombinase A [Streptococcus pneumoniae SP-BS293]
 gi|303262470|ref|ZP_07348412.1| recombinase A [Streptococcus pneumoniae SP14-BS292]
 gi|303265100|ref|ZP_07351013.1| recombinase A [Streptococcus pneumoniae BS397]
 gi|303266038|ref|ZP_07351933.1| recombinase A [Streptococcus pneumoniae BS457]
 gi|303268030|ref|ZP_07353831.1| recombinase A [Streptococcus pneumoniae BS458]
 gi|307068558|ref|YP_003877524.1| RecA/RadA recombinase [Streptococcus pneumoniae AP200]
 gi|307128147|ref|YP_003880178.1| protein RecA [Streptococcus pneumoniae 670-6B]
 gi|238691133|sp|B2IM28|RECA_STRPS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|254790448|sp|C1C9K8|RECA_STRP7 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|254790451|sp|C1CGM4|RECA_STRZJ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|254790452|sp|C1CMP5|RECA_STRZP RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|147755671|gb|EDK62717.1| recombinase A [Streptococcus pneumoniae SP11-BS70]
 gi|147758336|gb|EDK65336.1| recombinase A [Streptococcus pneumoniae SP14-BS69]
 gi|147760994|gb|EDK67963.1| recombinase A [Streptococcus pneumoniae SP18-BS74]
 gi|147922245|gb|EDK73366.1| recombinase A [Streptococcus pneumoniae SP3-BS71]
 gi|147928168|gb|EDK79186.1| recA protein [Streptococcus pneumoniae SP9-BS68]
 gi|182630218|gb|ACB91166.1| recombinase A [Streptococcus pneumoniae CGSP14]
 gi|183571550|gb|EDT92078.1| protein RecA [Streptococcus pneumoniae SP195]
 gi|183573656|gb|EDT94184.1| protein RecA [Streptococcus pneumoniae CDC0288-04]
 gi|183575357|gb|EDT95885.1| protein RecA [Streptococcus pneumoniae CDC3059-06]
 gi|183577586|gb|EDT98114.1| protein RecA [Streptococcus pneumoniae MLV-016]
 gi|225721855|gb|ACO17709.1| protein RecA [Streptococcus pneumoniae 70585]
 gi|225723947|gb|ACO19800.1| protein RecA [Streptococcus pneumoniae JJA]
 gi|225724324|gb|ACO20176.1| protein RecA [Streptococcus pneumoniae P1031]
 gi|301800711|emb|CBW33359.1| RecA recombinase (recombinase A) [Streptococcus pneumoniae OXC141]
 gi|301802627|emb|CBW35393.1| RecA recombinase (recombinase A) [Streptococcus pneumoniae INV200]
 gi|302598959|gb|EFL65990.1| recombinase A [Streptococcus pneumoniae BS455]
 gi|302636370|gb|EFL66863.1| recombinase A [Streptococcus pneumoniae SP14-BS292]
 gi|302638488|gb|EFL68953.1| recombinase A [Streptococcus pneumoniae SP-BS293]
 gi|302642390|gb|EFL72736.1| recombinase A [Streptococcus pneumoniae BS458]
 gi|302644479|gb|EFL74731.1| recombinase A [Streptococcus pneumoniae BS457]
 gi|302645317|gb|EFL75551.1| recombinase A [Streptococcus pneumoniae BS397]
 gi|306410095|gb|ADM85522.1| RecA/RadA recombinase [Streptococcus pneumoniae AP200]
 gi|306485209|gb|ADM92078.1| protein RecA [Streptococcus pneumoniae 670-6B]
 gi|327389110|gb|EGE87456.1| protein RecA [Streptococcus pneumoniae GA04375]
          Length = 388

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 197/359 (54%), Positives = 270/359 (75%), Gaps = 7/359 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            ++ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG GG+PKGRI
Sbjct: 17  AEREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRI 74

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+
Sbjct: 75  IEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDS 134

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +S
Sbjct: 135 GEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGAS 194

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSI 245
           I+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     K++ 
Sbjct: 195 INKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKETN 254

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAW+S+K ++
Sbjct: 255 VGKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEK 314

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLV-ADSLLQEPAINTKDDADKDDTDNVE 363
           +GQG EN+K +L E+ EI + I+  +R   GL+  + + ++   N KD+  K++  N E
Sbjct: 315 IGQGSENAKKYLAEHPEIFDEIDKQVRSKFGLIDGEEVSEQDTENKKDEPKKEEAVNEE 373


>gi|228476704|ref|ZP_04061373.1| protein RecA [Streptococcus salivarius SK126]
 gi|228251653|gb|EEK10750.1| protein RecA [Streptococcus salivarius SK126]
          Length = 379

 Score =  349 bits (895), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 197/363 (54%), Positives = 271/363 (74%), Gaps = 12/363 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+G+MFG+PETT GG ALKFY+SVRLD+R    IK     KD   
Sbjct: 196 NKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDKKDQNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDLGIIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV---ADSLLQEPAINTKDDA---DKDDTD 360
           GQG EN+K +L ++ +I E I+  +R + GL+    + +++E  +    D    D D T 
Sbjct: 316 GQGSENAKKYLADHPDIFEEIDHKVRVHYGLIEPDEEDIVEEAQVEETSDELVLDLDSTI 375

Query: 361 NVE 363
            +E
Sbjct: 376 EIE 378


>gi|322377170|ref|ZP_08051662.1| protein RecA [Streptococcus sp. M334]
 gi|321281883|gb|EFX58891.1| protein RecA [Streptococcus sp. M334]
          Length = 388

 Score =  349 bits (895), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 198/368 (53%), Positives = 271/368 (73%), Gaps = 7/368 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +D   +    ++ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG
Sbjct: 8   LDEISKKFGAEREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALG 65

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++ 
Sbjct: 66  SGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNID 125

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MS
Sbjct: 126 ELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMS 185

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK
Sbjct: 186 QAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIK 245

Query: 241 ----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
                KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+G
Sbjct: 246 GTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIKKAG 305

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLV-ADSLLQEPAINTKDDAD 355
           AW+S+K +++GQG EN+K +L ++ E+ + I+  +R   GL+  +    E     KD+A 
Sbjct: 306 AWYSYKDEKIGQGSENAKKYLTDHPEVFDEIDHQVRVQFGLIDGEEASVEGVETKKDEAV 365

Query: 356 KDDTDNVE 363
           + D+ N E
Sbjct: 366 QADSVNEE 373


>gi|78357416|ref|YP_388865.1| recombinase A [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|123754866|sp|Q30YS6|RECA_DESDG RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|78219821|gb|ABB39170.1| RecA protein [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 351

 Score =  349 bits (895), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 203/360 (56%), Positives = 272/360 (75%), Gaps = 11/360 (3%)

Query: 1   MDYRKEMNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIAL 59
           M  +  +   + + +AL  ALS I+R YG G++M+L         + V+ SGS+GLD+AL
Sbjct: 1   MSKKTSLTPEEMRREALNTALSTIERKYGSGSVMKLSDDA--HTNVAVIPSGSIGLDLAL 58

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           G+GG P+GR+ EIYGPESSGKTTLALH IA+ QK GGT AF+DAEHALD  YAR+LGV  
Sbjct: 59  GVGGIPRGRVTEIYGPESSGKTTLALHMIAECQKQGGTAAFIDAEHALDINYARRLGVKT 118

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
             +LISQPD GEQAL+I DMLVRS AVD++VIDSVAAL P++E+EG+MGE+  G QARLM
Sbjct: 119 DEMLISQPDYGEQALDIADMLVRSNAVDVVVIDSVAALIPQSELEGNMGETQVGSQARLM 178

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGS 238
           S A+RKLT +I +S+  ++FINQ+RMKIG M +GSPETTTGGNALKFY SVR+D+R++ +
Sbjct: 179 SHAMRKLTGTIHKSRTSVIFINQIRMKIGTMGYGSPETTTGGNALKFYCSVRIDVRKIQT 238

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           +KDK+ + GN+ RVK+VKNK+A PF++ +FDI+YG+G+S  GELIDLGV+  IV+KSGAW
Sbjct: 239 LKDKEEVYGNRVRVKIVKNKVAPPFREAQFDILYGQGVSRTGELIDLGVETGIVEKSGAW 298

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           ++F  +RLGQG+EN +  L+EN  + E IE  L ++ G+          + + D+A+K D
Sbjct: 299 YAFGSERLGQGKENVRQMLQENTTLREAIEQKLLEHLGM-------REPVQSADEAEKQD 351


>gi|87124957|ref|ZP_01080804.1| RecA bacterial DNA recombination protein [Synechococcus sp. RS9917]
 gi|86167277|gb|EAQ68537.1| RecA bacterial DNA recombination protein [Synechococcus sp. RS9917]
          Length = 396

 Score =  349 bits (895), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 190/325 (58%), Positives = 252/325 (77%), Gaps = 3/325 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL   L QI+R +GKG+IM+LG    +   +E + +G+L LD+ALG GG+PKGR+V
Sbjct: 15  ERDKALNLVLGQIERNFGKGSIMRLGDASRMR--VETIPTGALTLDLALG-GGYPKGRVV 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL LH IA+ Q+ GG  AFVDAEHALD +YA  LGVD++NLL+SQPDTG
Sbjct: 72  EVYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D LVRS AVDI+V+DSVAALTPRAEIEG+MG+   G QARLMSQA+RK+T +I
Sbjct: 132 EMALEIVDQLVRSAAVDIVVVDSVAALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNI 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K      G + 
Sbjct: 192 GKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRA 251

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV KNK+A PF+  EFDI++G GIS  G L+DL  +  +V + GAW+S++G  +GQGR
Sbjct: 252 KVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVIRKGAWYSYEGDNIGQGR 311

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
           +N+  +L +N +  + IE+L+RQ  
Sbjct: 312 DNTIGWLEQNPDAKDAIEALVRQKL 336


>gi|254796889|ref|YP_003081726.1| protein RecA [Neorickettsia risticii str. Illinois]
 gi|254590125|gb|ACT69487.1| protein RecA [Neorickettsia risticii str. Illinois]
          Length = 327

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 215/330 (65%), Positives = 280/330 (84%), Gaps = 4/330 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +D+  AL+  ++QI++++GKG+IM    + +    +E +S+GS+GLD ALG GG PKGRI
Sbjct: 1   MDREDALKGVVAQIEKMFGKGSIMTFSQEPA---SVECISTGSIGLDSALG-GGIPKGRI 56

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EI+GPESSGKTTL LH IA++QK GGTCAFVDAEHALD +YA++LGV ++ LLISQPDT
Sbjct: 57  IEIFGPESSGKTTLTLHIIAEAQKNGGTCAFVDAEHALDPVYAKRLGVKIEELLISQPDT 116

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D L++SGAVD+IV+DSVAALTPRAEIEG+MG+   G+QARL+SQALRK+T+S
Sbjct: 117 GEQALEIVDSLIKSGAVDVIVVDSVAALTPRAEIEGEMGDLHVGLQARLLSQALRKITAS 176

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +SRS C++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVR+DIR++GSIKDK+ + GNQ
Sbjct: 177 VSRSNCVVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRIDIRKIGSIKDKEDVVGNQ 236

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQ EFDI+Y EGIS FGE+I++GV+  I++K+G+++S+   +LGQG
Sbjct: 237 TRVKVVKNKVAPPFKQAEFDIIYTEGISKFGEIIEIGVRNKIIEKAGSYYSYGDVKLGQG 296

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +EN K FL+EN E+A  +E  +R +  L+A
Sbjct: 297 KENVKQFLKENKELAAELEGKVRDSLLLIA 326


>gi|296803018|gb|ADH51585.1| DNA recombinase [Burkholderia cenocepacia]
          Length = 307

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 217/308 (70%), Positives = 268/308 (87%), Gaps = 1/308 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+
Sbjct: 1   SIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IV
Sbjct: 60  LQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM
Sbjct: 120 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 179

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI
Sbjct: 180 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 239

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
           +YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ 
Sbjct: 240 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 299

Query: 331 LRQNAGLV 338
           +R++ G+V
Sbjct: 300 IRESLGVV 307


>gi|296837361|gb|ADH59539.1| DNA recombinase [Burkholderia cenocepacia]
          Length = 307

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 217/307 (70%), Positives = 267/307 (86%), Gaps = 1/307 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQNAG 336
            +R++ G
Sbjct: 300 RIRESLG 306


>gi|295703856|ref|YP_003596931.1| RecA1 protein [Bacillus megaterium DSM 319]
 gi|40217467|emb|CAD56681.2| RecA1 protein [Bacillus megaterium]
 gi|294801515|gb|ADF38581.1| RecA1 protein [Bacillus megaterium DSM 319]
          Length = 345

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 208/323 (64%), Positives = 259/323 (80%), Gaps = 2/323 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + DK  AL+ AL QI++ +G G+I+++G        +E  SSGSL LDIALGI G+PKGR
Sbjct: 1   MNDKKAALDMALKQIEKQFGTGSIIKMGE--GTHTKVEASSSGSLALDIALGINGYPKGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT++LH IA+ QK GG  AF+DAEHALD +YARKLGVD+  LL+SQPD
Sbjct: 59  IMEVYGPESSGKTTVSLHAIAEVQKNGGRAAFIDAEHALDPVYARKLGVDIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDIIV+DSVAAL P+ EIEG+MG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDIIVVDSVAALVPQKEIEGEMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K  + I GN
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKLGNDIVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TR+KVVKNKMA PF+  E DIMYGEGIS  GE++D+G +  IV KSG+WFS+  +RLGQ
Sbjct: 239 KTRIKVVKNKMAPPFRIAEVDIMYGEGISKEGEILDIGSEVDIVQKSGSWFSYNEERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLL 331
           GREN+KIFL+EN EI E I   +
Sbjct: 299 GRENAKIFLKENPEIREEIRKRI 321


>gi|172039552|ref|YP_001806053.1| recombinase A [Cyanothece sp. ATCC 51142]
 gi|226723626|sp|B1WW59|RECA_CYAA5 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|171701006|gb|ACB53987.1| recombination protein [Cyanothece sp. ATCC 51142]
          Length = 349

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 192/347 (55%), Positives = 256/347 (73%), Gaps = 4/347 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  DK KAL   L+QI+R +GKG+IM+LG    +   +E +S+G+L LD+ALG GG P G
Sbjct: 6   NNPDKEKALGLVLNQIERNFGKGSIMRLGDAARM--KVETISTGALTLDLALG-GGLPMG 62

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R+VEIYGPESSGKTTLALH IA+ QK GG  AFVDAEHALD  Y+  LGVD+ NLL++QP
Sbjct: 63  RVVEIYGPESSGKTTLALHAIAEVQKAGGVAAFVDAEHALDPTYSAALGVDINNLLVAQP 122

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGE ALEI D LVRS AVD++VIDSVAAL PRAEIEG+MG++  G+QARLMS+ALRK+ 
Sbjct: 123 DTGESALEIVDQLVRSAAVDVVVIDSVAALVPRAEIEGEMGDTQVGLQARLMSKALRKIA 182

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-IT 246
            +I +S C+++F+NQ+R KIG+ +GSPE TTGG ALKFY+SVRLDIRR+ ++K       
Sbjct: 183 GNIGKSGCVVIFLNQLRQKIGITYGSPEVTTGGTALKFYASVRLDIRRIQTLKKGSEGEY 242

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G + +VKV KNK+A PF+  EFDI++G+GIS  G ++DL  ++ +V + GAW+S+ G  +
Sbjct: 243 GIRAKVKVAKNKVAPPFRIAEFDIIFGQGISRMGCMLDLAEQSDVVLRKGAWYSYNGDNI 302

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
            QGR+N+  +L EN +IAE IE  +R+   L + S         +++
Sbjct: 303 SQGRDNAVKYLEENPKIAETIEQQVREKLELGSLSFAISQGDGEEEE 349


>gi|307709975|ref|ZP_07646422.1| protein RecA [Streptococcus mitis SK564]
 gi|307619346|gb|EFN98475.1| protein RecA [Streptococcus mitis SK564]
          Length = 388

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 199/368 (54%), Positives = 273/368 (74%), Gaps = 7/368 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +D   +    ++ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG
Sbjct: 8   LDEISKKFGAEREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALG 65

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++ 
Sbjct: 66  SGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNID 125

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MS
Sbjct: 126 ELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMS 185

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK
Sbjct: 186 QAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIK 245

Query: 241 ----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
                K++  G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+G
Sbjct: 246 GTGDQKETNVGKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTGELLKIASDLDIIKKAG 305

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLV-ADSLLQEPAINTKDDAD 355
           AW+S+K +++GQG EN+K +L E+ EI + I+  +R   GL+  +   ++   N KD+A 
Sbjct: 306 AWYSYKDEKIGQGSENAKKYLAEHPEIFDEIDKQVRSKFGLIDGEEASEQDTENKKDEAA 365

Query: 356 KDDTDNVE 363
           + D+ N E
Sbjct: 366 QVDSVNEE 373


>gi|296803070|gb|ADH51611.1| DNA recombinase [Burkholderia ambifaria]
          Length = 305

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 215/306 (70%), Positives = 267/306 (87%), Gaps = 1/306 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A
Sbjct: 1   GSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQNA 335
            +R++ 
Sbjct: 300 RIRESL 305


>gi|227486463|ref|ZP_03916779.1| recombination protein A [Anaerococcus lactolyticus ATCC 51172]
 gi|227235644|gb|EEI85659.1| recombination protein A [Anaerococcus lactolyticus ATCC 51172]
          Length = 349

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 201/326 (61%), Positives = 260/326 (79%), Gaps = 2/326 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            DK KAL+ A  QI++ YGKG+IM++G    +   I+ + +G++ LDIALGIGG P+GR+
Sbjct: 3   ADKKKALDQAFKQIEKKYGKGSIMKMGEAPRV--AIDSIPTGAVNLDIALGIGGLPRGRV 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALH IA++QK G TCAFVDAEHALD+ YA  LGV++  L++SQPDT
Sbjct: 61  IEIYGPESSGKTTLALHVIAEAQKLGDTCAFVDAEHALDAEYAGNLGVNIDELILSQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GE  L+I + LVRSGAV +IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALR+LT  
Sbjct: 121 GEAGLDIAESLVRSGAVGLIVIDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRRLTGI 180

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+S   ++FINQ+R KIGVMFG+PETTTGG ALKFY+SVRLDIRR+ +I + D+  G++
Sbjct: 181 ISKSNTTVIFINQLREKIGVMFGNPETTTGGRALKFYASVRLDIRRIKTITEGDNSIGSR 240

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVK+VKNK+A PFK VEFDIMYG+GIS  G L+D  V   IV+K+G+W+S+  ++LGQG
Sbjct: 241 TRVKIVKNKVAPPFKIVEFDIMYGKGISKSGVLLDTAVDLGIVEKAGSWYSYGDEKLGQG 300

Query: 310 RENSKIFLRENIEIAENIESLLRQNA 335
           REN KI L EN ++A+ I+  +R+  
Sbjct: 301 RENVKIMLEENADLAKLIDDKVREAF 326


>gi|319953059|ref|YP_004164326.1| protein reca [Cellulophaga algicola DSM 14237]
 gi|319421719|gb|ADV48828.1| Protein recA [Cellulophaga algicola DSM 14237]
          Length = 352

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 213/339 (62%), Positives = 269/339 (79%), Gaps = 7/339 (2%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   KE     K KAL+  L ++ + YGKGA+M++G   S+ + +EV+ SGSLGLD+ALG
Sbjct: 18  MSSEKEA----KLKALKLTLDKLDKTYGKGAVMKMGD--SVAQDVEVIPSGSLGLDVALG 71

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG+P+GR++EIYGPESSGKTTL LH IA++QK GG  AF+DAEHA D  YA KLGVD+ 
Sbjct: 72  VGGYPRGRVIEIYGPESSGKTTLTLHAIAEAQKNGGIAAFIDAEHAFDRFYAAKLGVDID 131

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL+ISQPD GEQ LEI D L+RSGA+DI+VIDSVAALTP++EIEG+MG+S  G+ ARLMS
Sbjct: 132 NLIISQPDNGEQGLEIADNLIRSGAIDIVVIDSVAALTPKSEIEGEMGDSKMGLHARLMS 191

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT SIS++KC ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IK
Sbjct: 192 QALRKLTGSISKTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIK 251

Query: 241 D-KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           D   ++ GN+TRVKVVKNK+A PF+Q EFDIMYGEGIS  GE+IDLGV+  I+ KSG+WF
Sbjct: 252 DTDGNVQGNKTRVKVVKNKVAPPFRQTEFDIMYGEGISKVGEVIDLGVEYEIIKKSGSWF 311

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLV 338
           S+   +LGQGR+  K  L +N E+ E +++ +R+    V
Sbjct: 312 SYGDTKLGQGRDAVKNLLLDNPELQEELDAKIREAIKTV 350


>gi|116075773|ref|ZP_01473032.1| recombinase A [Synechococcus sp. RS9916]
 gi|116067088|gb|EAU72843.1| recombinase A [Synechococcus sp. RS9916]
          Length = 394

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 193/325 (59%), Positives = 251/325 (77%), Gaps = 3/325 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+ KAL   L QI+R +GKG+IM+LG    +   +E + +G+L LD+ALG GG+PKGR+V
Sbjct: 19  DRDKALNLVLGQIERNFGKGSIMRLGDASRMR--VETIPTGALTLDLALG-GGYPKGRVV 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL LH IA+ QK GG  AFVDAEHALD +YA  LGVD++NLL+SQPDTG
Sbjct: 76  EVYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D LVRS AVDI+V+DSVAALTPRAEIEG+MG+   G QARLMSQA+RK+T +I
Sbjct: 136 EMALEIVDQLVRSAAVDIVVVDSVAALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K      G + 
Sbjct: 196 GKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRA 255

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV KNK+A PF+  EFDI++G GIS  G L+DL  +  +V + GAW+S++G  +GQGR
Sbjct: 256 KVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVIRKGAWYSYEGDNIGQGR 315

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
           +N+  +L +N E  + IE L+RQ  
Sbjct: 316 DNTIGWLEQNPEAKDAIEVLVRQKL 340


>gi|78185515|ref|YP_377950.1| recombinase A [Synechococcus sp. CC9902]
 gi|123729905|sp|Q3AUV9|RECA_SYNS9 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|78169809|gb|ABB26906.1| RecA protein [Synechococcus sp. CC9902]
          Length = 376

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 198/356 (55%), Positives = 259/356 (72%), Gaps = 3/356 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +  ++ KAL   L QI+R +GKG+IM+LG    +   +E +S+G+L LD+ALG GG+PKG
Sbjct: 16  SSGERDKALNLVLGQIERNFGKGSIMRLGDASRMR--VETISTGALTLDLALG-GGYPKG 72

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R+VEIYGPESSGKTTL LH IA+ QK GG  AFVDAEHALD  YA  LGVD++NLL+SQP
Sbjct: 73  RVVEIYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPHYAASLGVDVENLLVSQP 132

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGE ALEI D LVRS AVDI+VIDSVAALTPR+EIEG+MG+   G QARLMSQA+RK+T
Sbjct: 133 DTGEMALEIVDQLVRSAAVDIVVIDSVAALTPRSEIEGEMGDVSVGAQARLMSQAMRKIT 192

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            +I +S C ++F+NQ+R+KIGVM+G+PETTTGGNALKFY+SVRLDIRR+ ++K      G
Sbjct: 193 GNIGKSGCTVIFLNQLRLKIGVMYGNPETTTGGNALKFYASVRLDIRRIQTLKKGTEEFG 252

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
            + +VKV KNK+A PF+  EFDI++G GIS  G L+DL  +  +V + GAW+S++G  +G
Sbjct: 253 IRAKVKVAKNKVAPPFRIAEFDILFGRGISTVGCLLDLAEETGVVVRKGAWYSYEGDNIG 312

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           QGR+N+ +++ +N E A  IE+L+RQ      +             A       VE
Sbjct: 313 QGRDNTIVWMEQNPEAATTIETLVRQKLNEGTEVTANTVKSLEPAAARAATDKPVE 368


>gi|146297141|ref|YP_001180912.1| recA protein [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410717|gb|ABP67721.1| RecA protein [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 356

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 198/346 (57%), Positives = 266/346 (76%), Gaps = 2/346 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M  +DK KAL+  + +I++ YGKGAIM+LG      E I+V+ +G+L LDIALG+GG P+
Sbjct: 1   MENLDKKKALDRVIMEIEKAYGKGAIMKLGEMAK--ENIDVIPTGALSLDIALGVGGVPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYG ESSGKTT+ALH IA++QK GG  AF+DAEHALD  YA++LGVD+ NL++SQ
Sbjct: 59  GRIVEIYGAESSGKTTIALHIIAEAQKMGGEAAFIDAEHALDPFYAKRLGVDINNLIVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+GEQALEI + LVRS A+D+IV+DSVAAL P+AEI+G+MGE+  G+QARLMSQALRKL
Sbjct: 119 PDSGEQALEIVEALVRSNAIDVIVVDSVAALVPQAEIDGEMGEAHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
               S++K  ++FINQ+R K+GVMFG+PETT GG ALKFY+SVRL++R+   IK +    
Sbjct: 179 AGVTSKTKTTVIFINQLREKVGVMFGNPETTPGGRALKFYASVRLEVRKGEIIKQQGQPI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G + +VKVVKNK+A PFK+ EFD++YGEGIS  G ++D+ V   ++ KSGAW+++ GQ++
Sbjct: 239 GTKVKVKVVKNKVAPPFKEAEFDLIYGEGISKEGNVLDVAVNIDVIQKSGAWYTYNGQKI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GQGREN+K FL+EN +I + I   ++QNA L  + +     I   D
Sbjct: 299 GQGRENAKQFLKENPDIMQEIIEKIKQNANLAFEKIKTTAEIPEDD 344


>gi|149394984|gb|ABR27346.1| RecA [Burkholderia cenocepacia]
          Length = 307

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 217/307 (70%), Positives = 267/307 (86%), Gaps = 1/307 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 2   GSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 60

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 61  ELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 120

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 121 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 180

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 181 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 240

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 241 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 300

Query: 330 LLRQNAG 336
            +R++ G
Sbjct: 301 RIRESLG 307


>gi|303245635|ref|ZP_07331918.1| recA protein [Desulfovibrio fructosovorans JJ]
 gi|302492898|gb|EFL52763.1| recA protein [Desulfovibrio fructosovorans JJ]
          Length = 356

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 210/356 (58%), Positives = 271/356 (76%), Gaps = 5/356 (1%)

Query: 1   MDYRKEMNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIAL 59
           M  +   +  D +++AL  AL+ I+R +G+GA+M+L     +   I  + +GS+GLD+AL
Sbjct: 1   MARKPAQSPEDFRNEALATALTTIERKHGQGAVMRLDDAAHV--KIPSIPTGSIGLDLAL 58

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           GIGG PKGRI EIYGPESSGKTTLALH IA+SQK GGT AF+DAEHALD  YAR+LGV+ 
Sbjct: 59  GIGGIPKGRITEIYGPESSGKTTLALHIIAESQKLGGTAAFIDAEHALDVNYARRLGVNT 118

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
             LLISQPD GEQAL+I D+LVRSGAVD++VIDSVAAL P+AE+EG+MGE+  G QARLM
Sbjct: 119 PELLISQPDYGEQALDIADLLVRSGAVDVVVIDSVAALIPQAELEGEMGETQVGGQARLM 178

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           S A+RKLT +I +S+  ++FINQ+RMKI    +GSPETTTGGNALKFY+SVRLDIRR+ +
Sbjct: 179 SHAMRKLTGTIHKSQTSVIFINQIRMKIGMTGYGSPETTTGGNALKFYASVRLDIRRIQT 238

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           +KDK+   G++ RVKVVKNK+A PF++ +FDI+YG G+S  GELID+GV A IVDKSGAW
Sbjct: 239 LKDKEETYGSRCRVKVVKNKVAPPFREAQFDILYGTGVSREGELIDMGVDAGIVDKSGAW 298

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ-EPAINTKDD 353
           FSF  +RLGQGR+N + FL+E+ +I   IE  L ++ G    +     P    ++D
Sbjct: 299 FSFGSERLGQGRDNVRAFLQEHTDIRGQIEGKLLEHLGFAEGTPPPISPEAIEEED 354


>gi|296875595|ref|ZP_06899666.1| recombination protein A [Streptococcus parasanguinis ATCC 15912]
 gi|296433392|gb|EFH19168.1| recombination protein A [Streptococcus parasanguinis ATCC 15912]
          Length = 381

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 199/375 (53%), Positives = 272/375 (72%), Gaps = 14/375 (3%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +D   +    ++ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG
Sbjct: 8   LDDITKKFGDEREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALG 65

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++ 
Sbjct: 66  AGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNID 125

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MS
Sbjct: 126 ELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMS 185

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK
Sbjct: 186 QAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIK 245

Query: 241 ----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
                KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+G
Sbjct: 246 GTGDQKDTNVGKETKIKVVKNKVAPPFKEAMVEIMYGEGISRTGELVKIATDLDIIQKAG 305

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA-- 354
           AW+S+ G+++GQG EN+K FL ++ EI + I+  +R + GL+ +    +    T++ A  
Sbjct: 306 AWYSYNGEKIGQGSENAKKFLADHPEIFDEIDHKVRVHFGLIEEDEAVKSLDKTEEVAPV 365

Query: 355 ------DKDDTDNVE 363
                 D DD   +E
Sbjct: 366 VEEVTLDLDDAIEIE 380


>gi|294498505|ref|YP_003562205.1| RecA1 protein [Bacillus megaterium QM B1551]
 gi|294348442|gb|ADE68771.1| RecA1 protein [Bacillus megaterium QM B1551]
          Length = 341

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 208/323 (64%), Positives = 259/323 (80%), Gaps = 2/323 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + DK  AL+ AL QI++ +G G+I+++G        +E  SSGSL LDIALGI G+PKGR
Sbjct: 1   MNDKKAALDMALKQIEKQFGTGSIIKMGE--GTHTKVEASSSGSLALDIALGINGYPKGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT++LH IA+ QK GG  AF+DAEHALD +YARKLGVD+  LL+SQPD
Sbjct: 59  IMEVYGPESSGKTTVSLHAIAEVQKNGGRAAFIDAEHALDPVYARKLGVDIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDIIV+DSVAAL P+ EIEG+MG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDIIVVDSVAALVPQKEIEGEMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K  + I GN
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKLGNDIVGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TR+KVVKNKMA PF+  E DIMYGEGIS  GE++D+G +  IV KSG+WFS+  +RLGQ
Sbjct: 239 KTRIKVVKNKMAPPFRIAEVDIMYGEGISKEGEILDIGSEVDIVQKSGSWFSYNEERLGQ 298

Query: 309 GRENSKIFLRENIEIAENIESLL 331
           GREN+KIFL+EN EI E I   +
Sbjct: 299 GRENAKIFLKENPEIREEIRKRI 321


>gi|88807878|ref|ZP_01123389.1| recombinase A [Synechococcus sp. WH 7805]
 gi|88787917|gb|EAR19073.1| recombinase A [Synechococcus sp. WH 7805]
          Length = 382

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 190/330 (57%), Positives = 255/330 (77%), Gaps = 3/330 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           ++   ++ +AL   L QI+R +GKG+IM+LG    +   +E +S+G+L LD+ALG GG+P
Sbjct: 14  DVRPGERDQALNLVLGQIERNFGKGSIMRLGDASRMR--VETISTGALTLDLALG-GGYP 70

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR+VE+YGPESSGKTTL LH IA+ Q+ GG  AFVDAEHALD +YA  LGVD++NLL+S
Sbjct: 71  KGRVVEVYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASLGVDIENLLVS 130

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGE ALEI D LVRS AVDI+V+DSVAALTPRAEIEG+MG+   G QARLMSQA+RK
Sbjct: 131 QPDTGEMALEIVDQLVRSAAVDIVVVDSVAALTPRAEIEGEMGDLAVGAQARLMSQAMRK 190

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           +T +I +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K     
Sbjct: 191 ITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEE 250

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            G + +VKV KNK+A PF+  EFDI++G GIS  G L+DL  +  +V + GAW+S++G  
Sbjct: 251 YGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVTRKGAWYSYEGDN 310

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNA 335
           +GQGR+N+  +L +N +  + IE+L+RQ  
Sbjct: 311 IGQGRDNTIGWLEQNPDAKDTIETLVRQKL 340


>gi|325286323|ref|YP_004262113.1| Protein recA [Cellulophaga lytica DSM 7489]
 gi|324321777|gb|ADY29242.1| Protein recA [Cellulophaga lytica DSM 7489]
          Length = 354

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 207/335 (61%), Positives = 265/335 (79%), Gaps = 7/335 (2%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   KE     K KAL+  L ++ + YGKG++M++G +  + E + V+SSGSLGLDIALG
Sbjct: 20  MSNEKEA----KLKALKLTLDKLDKTYGKGSVMKMGDK--VVEDVAVISSGSLGLDIALG 73

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG+P+GR+VEIYGPESSGKTTL LH IA++QK GG  AF+DAEHA D  YA KLGVD+ 
Sbjct: 74  VGGYPRGRVVEIYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAEHAFDRFYAEKLGVDID 133

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL+ISQPD GEQALEI D L+RSGA+DI+++DSVAALTP++EIEG+MG+S  G+ ARLMS
Sbjct: 134 NLIISQPDHGEQALEIADNLIRSGAIDIVIVDSVAALTPKSEIEGEMGDSKMGLHARLMS 193

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLTSSIS++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IK
Sbjct: 194 QALRKLTSSISKTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIK 253

Query: 241 D-KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           +    + GN+TRVKVVKNK+A PF+  EFDIMYG+G+S  GE++DLGV+  I+ KSG+WF
Sbjct: 254 NTDGDVQGNKTRVKVVKNKVAPPFRTTEFDIMYGQGVSKVGEILDLGVQYEIIKKSGSWF 313

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
           S+   +LGQGR+  K  L +N E+ E +E  ++  
Sbjct: 314 SYGDTKLGQGRDAVKSILADNPELLEELEVKIKDA 348


>gi|260911216|ref|ZP_05917818.1| recombination protein A [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634646|gb|EEX52734.1| recombination protein A [Prevotella sp. oral taxon 472 str. F0295]
          Length = 341

 Score =  349 bits (894), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 207/322 (64%), Positives = 267/322 (82%), Gaps = 2/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+AA+S+I++ +GKG+IM++G +    E +EV+ +GS+GLD+ALG+GG+P+GRI+E
Sbjct: 15  KLKALQAAMSKIEKDFGKGSIMKMGDEQ--IENVEVIPTGSIGLDVALGVGGYPRGRIIE 72

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD GE
Sbjct: 73  IYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAEKLGVDMANLWISQPDNGE 132

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RS A+DI+VIDSVAALTP+ EIEGDMG++  G+QARLMSQALRKLTS+IS
Sbjct: 133 QALEIADQLIRSSAIDILVIDSVAALTPKKEIEGDMGDNNVGLQARLMSQALRKLTSTIS 192

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++    +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR+V  IKD D+I GNQ R
Sbjct: 193 KTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRKVTGIKDGDTIVGNQVR 252

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF++ EF+I +GEGIS  GE++DLGV+  I+ KSG+WFS+   +LGQGR+
Sbjct: 253 VKVVKNKVAPPFRKTEFEITFGEGISKVGEILDLGVEYDIIKKSGSWFSYNDAKLGQGRD 312

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
            +K  L++N E+ E +E+ + Q
Sbjct: 313 ATKALLKDNPELCEELEAKIMQ 334


>gi|312622753|ref|YP_004024366.1| reca protein [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203220|gb|ADQ46547.1| recA protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 356

 Score =  349 bits (894), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 200/346 (57%), Positives = 269/346 (77%), Gaps = 2/346 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M  +DK KAL+  + +I++ YGKGAIM+LG      E I+V+ +G+L LDIALG+GG P+
Sbjct: 1   MENLDKKKALDKVIMEIEKAYGKGAIMKLGEMAK--ENIDVIPTGALSLDIALGVGGVPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYG ESSGKTT+ALH IA++QK GG  AF+DAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 59  GRIVEIYGAESSGKTTIALHIIAEAQKMGGEAAFIDAEHALDPFYAKKLGVDINNLIVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+GEQALEI + LVRS A+D+IVIDSVAAL P+AEI+G+MGE+  G+QARLMSQALRKL
Sbjct: 119 PDSGEQALEIVEALVRSNAIDVIVIDSVAALVPQAEIDGEMGEAHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
               S++K  ++FINQ+R K+G+MFG+PETT GG ALKFY+SVRL++R+   IK +    
Sbjct: 179 AGITSKTKTTVIFINQLREKVGIMFGNPETTPGGRALKFYASVRLEVRKGEIIKSQGQPI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G++ +VKVVKNK+A PFK+ EFD++YGEGIS  G ++D+ V   ++ KSGAW+++ GQ++
Sbjct: 239 GSKVKVKVVKNKVAPPFKEAEFDLIYGEGISKEGNVLDVAVNIDVIQKSGAWYTYNGQKI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GQGREN+K FL+EN +I + I   +RQNA L  + +     I+ +D
Sbjct: 299 GQGRENAKQFLKENPDIMQEIIEKIRQNANLAFEKIKTTAEISDED 344


>gi|125719024|ref|YP_001036157.1| recombinase A [Streptococcus sanguinis SK36]
 gi|166220686|sp|A3CR02|RECA_STRSV RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|125498941|gb|ABN45607.1| RecA protein, putative [Streptococcus sanguinis SK36]
          Length = 382

 Score =  349 bits (894), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 198/376 (52%), Positives = 270/376 (71%), Gaps = 15/376 (3%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +D   +    ++ KAL+ AL  I++ +GKGAIM+LG +    + ++V+SSGSL LDIALG
Sbjct: 8   LDEISKKFGDERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALG 65

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++ 
Sbjct: 66  AGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNID 125

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MS
Sbjct: 126 ELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMS 185

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK
Sbjct: 186 QAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIK 245

Query: 241 ----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
               +KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  GELI +     I+ K+G
Sbjct: 246 GTGDEKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAG 305

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA-- 354
           AW+S+  +++GQG EN+K +L ++ E+   I+  +R   GL+    + E   N  +    
Sbjct: 306 AWYSYNDEKIGQGSENAKKYLADHPEVFGEIDRQVRVRYGLIDGDDMAEAVGNKAESPVE 365

Query: 355 -------DKDDTDNVE 363
                  D DD   +E
Sbjct: 366 TLEEVTLDLDDAIEIE 381


>gi|152991678|ref|YP_001357399.1| recombinase A [Sulfurovum sp. NBC37-1]
 gi|166220687|sp|A6Q6D3|RECA_SULNB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|151423539|dbj|BAF71042.1| DNA recombination protein RecA [Sulfurovum sp. NBC37-1]
          Length = 347

 Score =  349 bits (894), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 207/344 (60%), Positives = 272/344 (79%), Gaps = 3/344 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
             K KAL+ A+ QI + +GKG +M+LG +   FE I  +S+GSLGLD+ALGIGG P+GRI
Sbjct: 5   AQKQKALDMAIKQIDKTFGKGTLMRLGDKE--FEPIAAISTGSLGLDMALGIGGIPQGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VE+YGPESSGKTTLAL TIA +QK G  CAF+DAEHALD +YA+ LGVD  NLL+SQPD 
Sbjct: 63  VEVYGPESSGKTTLALQTIASAQKEGMVCAFIDAEHALDVVYAKNLGVDTDNLLVSQPDF 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQAL++ + L RSGAVD+I++DSVAALTP++EIEGDMG++  G+QARLMSQALRKLT+ 
Sbjct: 123 GEQALDVLETLTRSGAVDLIIVDSVAALTPKSEIEGDMGDTHVGLQARLMSQALRKLTAI 182

Query: 190 ISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           + ++   ++FINQ+RMKIG M +GSPETTTGGNALKFY SVR+D+RR+ ++K  +S  GN
Sbjct: 183 LHKTNTTVIFINQIRMKIGTMGYGSPETTTGGNALKFYCSVRIDVRRIATLKQGESQIGN 242

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + + KVVKNK+A PF+Q EFDIM+GEGIS+ GELID G+K  IVDKSGAWFS+  ++LGQ
Sbjct: 243 RVKAKVVKNKVAPPFRQAEFDIMFGEGISYIGELIDYGIKMDIVDKSGAWFSYGAEKLGQ 302

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           G+EN+K+ L+EN ++ E IE  +++  G      + +  I++ D
Sbjct: 303 GKENAKLTLKENPKLREEIEMQVKEALGFGEALGMDQEEISSAD 346


>gi|149194199|ref|ZP_01871297.1| recombinase A [Caminibacter mediatlanticus TB-2]
 gi|149136152|gb|EDM24630.1| recombinase A [Caminibacter mediatlanticus TB-2]
          Length = 351

 Score =  349 bits (894), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 208/343 (60%), Positives = 268/343 (78%), Gaps = 3/343 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KALE AL Q+++ +GKG++++L  +    E I  + +GS GLDIALGIGG PKGRI E
Sbjct: 5   KQKALELALKQVEKQFGKGSLVKLSEKE--IEPIAAIPTGSFGLDIALGIGGIPKGRITE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL  IAQ+QK GG  AF+DAEHA D IYAR +GVD+ NLL+SQPD GE
Sbjct: 63  IYGPESSGKTTLALSIIAQAQKDGGVAAFIDAEHAFDPIYARNIGVDIDNLLVSQPDYGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI + L RSGAVDIIV+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKLT++I 
Sbjct: 123 QALEIVETLARSGAVDIIVVDSVAALTPKAEIEGNMGDAQVGVQARLMSQALRKLTAAIH 182

Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +    +VFINQ+RMKIG+M +GSPETTTGGNALKFYSSVRLD+RR+ ++K  D   GN+ 
Sbjct: 183 KMNTTVVFINQIRMKIGMMGYGSPETTTGGNALKFYSSVRLDVRRIATLKQGDKEVGNRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF+  EFDIM+G+GIS  GE++D GVK  I+DKSGAWFS+   +LGQG+
Sbjct: 243 KVKVVKNKVAPPFRIAEFDIMFGKGISREGEILDFGVKLDIIDKSGAWFSYGATKLGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           EN+K +LR + E+   IE+ +++  G+    +++      +D+
Sbjct: 303 ENAKEYLRSHPELMHEIEAKIKEALGMELSHMIETIEKQDEDE 345


>gi|169836086|ref|ZP_02869274.1| recA protein [candidate division TM7 single-cell isolate TM7a]
          Length = 347

 Score =  349 bits (894), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 206/323 (63%), Positives = 261/323 (80%), Gaps = 3/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL  A+ QI + +G G+IM+LG    +   +E++ SGSL LD+ALG GG+PKGRI+E
Sbjct: 21  KMKALNLAMEQITKQFGDGSIMKLGDAKKV--DVELLPSGSLSLDLALG-GGYPKGRIIE 77

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA+ QK GGT AF+DAEHALD  YARKLGVD +NLLI+QPD GE
Sbjct: 78  IYGPESSGKTTLTLHAIAEIQKQGGTAAFIDAEHALDPSYARKLGVDTENLLIAQPDNGE 137

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI + LVRS AVD+IV+DSVAALTP+AEI+GDMG+S  G+QARLMSQALRKLT  I+
Sbjct: 138 QALEIAETLVRSNAVDLIVVDSVAALTPQAEIDGDMGDSHMGLQARLMSQALRKLTGIIN 197

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +SK  ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIRR G IK  D I GN+T+
Sbjct: 198 KSKATVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRRTGQIKVGDDIIGNRTK 257

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNK+A PF+  EFDIMY EGIS  G+++DL  +  +V+KSGA++ + G+ +GQGR+
Sbjct: 258 VKIVKNKIAPPFRLAEFDIMYNEGISKTGDILDLAAQYGVVEKSGAFYKYGGETIGQGRD 317

Query: 312 NSKIFLRENIEIAENIESLLRQN 334
            +K FL++N EI   I++ +R+ 
Sbjct: 318 KTKTFLKDNPEIMSEIDNKVREA 340


>gi|148927934|ref|ZP_01811340.1| recA protein [candidate division TM7 genomosp. GTL1]
 gi|147886723|gb|EDK72287.1| recA protein [candidate division TM7 genomosp. GTL1]
          Length = 343

 Score =  349 bits (894), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 204/331 (61%), Positives = 259/331 (78%), Gaps = 3/331 (0%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           + E+    K KAL  A+ QI + +G G+IM+LG        +E++ SG+L LDIALG GG
Sbjct: 10  KSEIANEGKLKALGLAVEQITKQFGDGSIMKLGESHRAH--VELIPSGALSLDIALG-GG 66

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
           +PKGR++EIYGPESSGKTTL LH IA+ QK GGT AF+DAEHALD  YA+KLGVD  NLL
Sbjct: 67  YPKGRVIEIYGPESSGKTTLTLHAIAEVQKKGGTAAFIDAEHALDPAYAKKLGVDTDNLL 126

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPD GEQALEI + LVRS AVD+IV+DSVAAL P+AEI+G+MG+S  G+QARLMSQAL
Sbjct: 127 VSQPDNGEQALEIAETLVRSNAVDLIVVDSVAALVPQAEIDGEMGDSHMGLQARLMSQAL 186

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT  IS+SK  ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G IK  +
Sbjct: 187 RKLTGIISKSKATVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGQIKVGE 246

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+T+VKVVKNK+A+PF+  EFDIMY EGIS  G+++DL V+  I+ KSGAWF +K 
Sbjct: 247 DVIGNRTKVKVVKNKIAAPFRVAEFDIMYNEGISKTGDVLDLAVQHGIIGKSGAWFDYKD 306

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQN 334
            ++GQGRE +K +L++  ++   +E  +R  
Sbjct: 307 AKIGQGREATKKYLKDEPKVMAEVEQKVRDK 337


>gi|307151323|ref|YP_003886707.1| recA protein [Cyanothece sp. PCC 7822]
 gi|306981551|gb|ADN13432.1| recA protein [Cyanothece sp. PCC 7822]
          Length = 370

 Score =  349 bits (894), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 188/333 (56%), Positives = 248/333 (74%), Gaps = 4/333 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  DK KAL   L+QI+R +GKG+IM+LG    +   +E + SG+L LD+ALG GG PKG
Sbjct: 20  NNPDKEKALNLVLNQIERSFGKGSIMRLGDAARMR--VETIPSGALTLDLALG-GGLPKG 76

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R++EIYGPESSGKTTLALH +A+ QK GG  AFVDAEHALD  YA  LGVD+ NLL++QP
Sbjct: 77  RVIEIYGPESSGKTTLALHALAEVQKAGGVAAFVDAEHALDPTYAEALGVDIHNLLVAQP 136

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGE ALEI D LVRS AVDI+V+DSVAAL PRAEIEG+MG++  G+QARLMS+ALRK+ 
Sbjct: 137 DTGESALEIVDQLVRSAAVDIVVVDSVAALVPRAEIEGEMGDNQVGLQARLMSKALRKIA 196

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-IT 246
            +I +S C+++F+NQ+R KIGV +GSPE TTGG ALKFY+SVRLDIRR+ ++K       
Sbjct: 197 GNIGKSGCVVIFLNQLRQKIGVTYGSPEVTTGGTALKFYASVRLDIRRIQTLKKGSEGEY 256

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G + +VKV KNK+A PF+  EFDI++G+GIS  G +ID+     ++ + GAW+S+ G  +
Sbjct: 257 GIRAKVKVAKNKVAPPFRIAEFDIIFGKGISQMGCMIDMAEHTDVITRKGAWYSYNGDNI 316

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
            QGR+N+  +L EN + A  IE  +R+   + +
Sbjct: 317 AQGRDNAVKYLEENPDTAVIIEKQVREKLDIAS 349


>gi|157150986|ref|YP_001451293.1| recombinase A [Streptococcus gordonii str. Challis substr. CH1]
 gi|172046860|sp|P49986|RECA_STRGC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|157075780|gb|ABV10463.1| recA protein [Streptococcus gordonii str. Challis substr. CH1]
          Length = 383

 Score =  349 bits (894), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 199/367 (54%), Positives = 271/367 (73%), Gaps = 9/367 (2%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +D   +    ++ KAL+ AL  I++ +GKGAIM+LG +    + ++V+SSGSL LDIALG
Sbjct: 8   LDDITKKFGDERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALG 65

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++ 
Sbjct: 66  AGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNID 125

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPD+GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+GD+G+S  G+QAR+MS
Sbjct: 126 ELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMS 185

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK
Sbjct: 186 QAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIK 245

Query: 241 D----KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
                KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  GELI +    +I+ K+G
Sbjct: 246 GTGDAKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLNIIKKAG 305

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           AW+S+  +++GQG EN+K +L ++ E+ + I+  +R   GL+ D    E    T  +   
Sbjct: 306 AWYSYNDEKIGQGSENAKKYLADHPEVFDEIDRQVRVRFGLIEDDQEGEA---TAAETTG 362

Query: 357 DDTDNVE 363
             T+N+E
Sbjct: 363 KITENIE 369


>gi|116072570|ref|ZP_01469836.1| recombinase A [Synechococcus sp. BL107]
 gi|116064457|gb|EAU70217.1| recombinase A [Synechococcus sp. BL107]
          Length = 376

 Score =  349 bits (894), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 198/356 (55%), Positives = 259/356 (72%), Gaps = 3/356 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +  ++ KAL   L QI+R +GKG+IM+LG    +   +E +S+G+L LD+ALG GG+PKG
Sbjct: 16  SSGERDKALNLVLGQIERNFGKGSIMRLGDASRMR--VETISTGALTLDLALG-GGYPKG 72

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R+VEIYGPESSGKTTL LH IA+ QK GG  AFVDAEHALD  YA  LGVD++NLL+SQP
Sbjct: 73  RVVEIYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPHYAASLGVDVENLLVSQP 132

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGE ALEI D LVRS AVDI+VIDSVAALTPR+EIEG+MG+   G QARLMSQA+RK+T
Sbjct: 133 DTGEMALEIVDQLVRSAAVDIVVIDSVAALTPRSEIEGEMGDVSVGSQARLMSQAMRKIT 192

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            +I +S C ++F+NQ+R+KIGVM+G+PETTTGGNALKFY+SVRLDIRR+ ++K      G
Sbjct: 193 GNIGKSGCTVIFLNQLRLKIGVMYGNPETTTGGNALKFYASVRLDIRRIQTLKKGTEEFG 252

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
            + +VKV KNK+A PF+  EFDI++G GIS  G L+DL  +  +V + GAW+S++G  +G
Sbjct: 253 IRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVVRKGAWYSYEGDNIG 312

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           QGR+N+ +++ +N E A  IE+L+RQ      +             A       VE
Sbjct: 313 QGRDNTIVWMEQNPEAATTIETLVRQKLSEGTEVTANTVKSLAPAGAKAASDKPVE 368


>gi|332169801|gb|AEE19056.1| recA protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 335

 Score =  349 bits (894), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 206/341 (60%), Positives = 267/341 (78%), Gaps = 7/341 (2%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   K+     K KAL+  L ++ + YGKGA+M++G Q  +   +E + +GSLGLD+ALG
Sbjct: 1   MSSEKDA----KLKALKLTLDKLDKTYGKGAVMKMGDQAIV--DVESIPTGSLGLDVALG 54

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG+P+GR++EIYGPESSGKTTL LH IAQ+QK GG  AF+DAEHA D  YA KLGVD+ 
Sbjct: 55  VGGYPRGRVIEIYGPESSGKTTLTLHAIAQAQKAGGIAAFIDAEHAFDRFYAEKLGVDID 114

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL+ISQPD GEQALEI D L+RSGA+DI+V+DSVAALTP++EIEG+MG+S  G+ ARLMS
Sbjct: 115 NLIISQPDNGEQALEIADNLIRSGAIDIVVVDSVAALTPKSEIEGEMGDSKMGLHARLMS 174

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT SIS++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IK
Sbjct: 175 QALRKLTGSISKTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIK 234

Query: 241 DKD-SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           D + ++ GN+TRVKVVKNK+A PF+  EFDIMYGEGIS  GE+ID+GV   IV K+G+WF
Sbjct: 235 DSNANVMGNKTRVKVVKNKVAPPFRMAEFDIMYGEGISKVGEIIDIGVNYEIVKKAGSWF 294

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           S++  +LGQGR+  K  L +N ++ + +E+ + +   L  +
Sbjct: 295 SYQDTKLGQGRDAVKALLLDNPDLMDELETKIHEAIKLSNE 335


>gi|302338561|ref|YP_003803767.1| recA protein [Spirochaeta smaragdinae DSM 11293]
 gi|301635746|gb|ADK81173.1| recA protein [Spirochaeta smaragdinae DSM 11293]
          Length = 381

 Score =  349 bits (894), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 204/351 (58%), Positives = 267/351 (76%), Gaps = 2/351 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  +K KALEAA  QI++ +GKG++M+LG +      IE + SGS+ LD ALG+GG+PKG
Sbjct: 14  NREEKEKALEAARLQIEKQFGKGSLMKLGGENRQGN-IETIPSGSILLDAALGVGGYPKG 72

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTLALH IA+ QK GG  AF+DAEHALD +YAR LGV++  + +SQP
Sbjct: 73  RIVEIYGPESSGKTTLALHAIAECQKQGGIAAFIDAEHALDPVYARNLGVNIDEMWVSQP 132

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI + LVRSGAVDIIV+DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT
Sbjct: 133 DTGEQALEIAESLVRSGAVDIIVVDSVAALTPQAEIEGDMGDSHMGLQARLMSQALRKLT 192

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI-KDKDSIT 246
             IS+S   L+FINQ+RMKIGVMFG+PETTTGG ALKFYSSVR+++RR+ +I K  D   
Sbjct: 193 GIISKSGACLIFINQIRMKIGVMFGNPETTTGGKALKFYSSVRIEVRRIETISKGADEAI 252

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ R+K+ KNK+A PFK+ E +I++G+GIS    L+D  +K  ++ KSG+W+S+  +R+
Sbjct: 253 GNRVRIKIAKNKVAPPFKKAELEIIFGKGISASASLLDAALKFEVIQKSGSWYSYGEERI 312

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           GQGREN+K+FL  N ++AE I+  +R           ++  +  ++D   +
Sbjct: 313 GQGRENAKLFLETNADVAEEIDKKVRVLLFPEPTPETKQKEVPKEEDKSAE 363


>gi|296837455|gb|ADH59586.1| DNA recombinase [Burkholderia vietnamiensis]
          Length = 305

 Score =  349 bits (894), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 216/306 (70%), Positives = 267/306 (87%), Gaps = 1/306 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQNA 335
            +R++ 
Sbjct: 300 RIRESL 305


>gi|149012471|ref|ZP_01833502.1| recA protein [Streptococcus pneumoniae SP19-BS75]
 gi|149021897|ref|ZP_01835884.1| recombinase A [Streptococcus pneumoniae SP23-BS72]
 gi|147763527|gb|EDK70463.1| recA protein [Streptococcus pneumoniae SP19-BS75]
 gi|147929935|gb|EDK80923.1| recombinase A [Streptococcus pneumoniae SP23-BS72]
          Length = 388

 Score =  349 bits (894), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 197/359 (54%), Positives = 269/359 (74%), Gaps = 7/359 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            ++ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG GG+PKGRI
Sbjct: 17  AEREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRI 74

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+
Sbjct: 75  IEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDS 134

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +S
Sbjct: 135 GEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGAS 194

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSI 245
           I+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     K++ 
Sbjct: 195 INKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKETN 254

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAW+S+K ++
Sbjct: 255 VGKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEK 314

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLV-ADSLLQEPAINTKDDADKDDTDNVE 363
           +GQG EN+K +L E+ EI + I+  +R   GL+  +   ++   N KD+  K++  N E
Sbjct: 315 IGQGSENAKKYLAEHPEIFDEIDKQVRSKFGLIDGEEASEQDTENKKDEPKKEEAVNEE 373


>gi|116617700|ref|YP_818071.1| RecA protein [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|116096547|gb|ABJ61698.1| RecA protein [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 385

 Score =  349 bits (894), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 195/350 (55%), Positives = 263/350 (75%), Gaps = 5/350 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL +I++ +GKG++M LG        IE + SGS+ +D+ALG+GG+PKGRI+E
Sbjct: 18  RRAALDEALKKIEKNFGKGSVMTLGDNA--LTQIETIPSGSVKIDVALGVGGYPKGRIIE 75

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  YA  LGV    LL+SQPDTGE
Sbjct: 76  VYGPESSGKTTIALHAVAEVQKQGGTAAYIDAENALDVKYAEALGVKKDELLLSQPDTGE 135

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q LEI D LV+SGAVD+IV+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL  +++
Sbjct: 136 QGLEIADALVQSGAVDMIVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLAGTLN 195

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           R+  I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   IKD   +TGN T+
Sbjct: 196 RTGTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRSTQIKDGTDVTGNLTK 255

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNK+A PFK  E DIMYG GIS  GE++DL V   I+DK+GAW++++G+R+GQGRE
Sbjct: 256 VKIVKNKVAPPFKVAEVDIMYGHGISQTGEILDLAVDQDIIDKAGAWYAYEGERIGQGRE 315

Query: 312 NSKIFLR--ENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
            +K +L   E+  + + +   +RQ  G+ +++       NT+  A+K D 
Sbjct: 316 KAKDYLDDPEHAALRQELYVKVRQAYGIDSNA-NGTAVSNTEAQAEKSDE 364


>gi|167752109|ref|ZP_02424236.1| hypothetical protein ALIPUT_00351 [Alistipes putredinis DSM 17216]
 gi|167660350|gb|EDS04480.1| hypothetical protein ALIPUT_00351 [Alistipes putredinis DSM 17216]
          Length = 338

 Score =  349 bits (894), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 202/332 (60%), Positives = 266/332 (80%), Gaps = 2/332 (0%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
            K     DK K L A + +I++ +GKG+IM++ S  +    ++V+ +GS+ LD+ALG+GG
Sbjct: 3   EKTQANPDKLKVLNAVMEKIEKDFGKGSIMRMSS--AEVADVQVIPTGSITLDMALGVGG 60

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
           +PKGR++EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA DS YA++LGVD+ NLL
Sbjct: 61  YPKGRVIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDSSYAQQLGVDVDNLL 120

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           ISQPD GEQALEI D L+RS A+DIIVIDSVAALTP+AEIEG+MG++  G+QARLMSQAL
Sbjct: 121 ISQPDNGEQALEIADSLIRSSAIDIIVIDSVAALTPKAEIEGEMGDAKMGLQARLMSQAL 180

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLTSSIS++K + +FINQ+R KIGV++G+PETTTGGNALKFY+SVR+DIRRV  IKD +
Sbjct: 181 RKLTSSISKTKTVCIFINQLRDKIGVVYGNPETTTGGNALKFYASVRIDIRRVSVIKDGE 240

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
              G +TRVKVVKNK+A PFK+ EFDIM+GEGIS  GE+IDLGV   I+ KSG+WFS+  
Sbjct: 241 EQLGTRTRVKVVKNKVAPPFKKAEFDIMFGEGISKIGEIIDLGVDYGIIKKSGSWFSYGD 300

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
           +++GQGR++ K  L+ +  +   +E+ +R+  
Sbjct: 301 RKIGQGRDSVKELLKNDEALRNEVEAKVREAM 332


>gi|262283645|ref|ZP_06061410.1| recombinase A [Streptococcus sp. 2_1_36FAA]
 gi|262260702|gb|EEY79403.1| recombinase A [Streptococcus sp. 2_1_36FAA]
          Length = 383

 Score =  348 bits (893), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 199/367 (54%), Positives = 271/367 (73%), Gaps = 9/367 (2%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +D   +    ++ KAL+ AL  I++ +GKGAIM+LG +    + ++V+SSGSL LDIALG
Sbjct: 8   LDDITKKFGDERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALG 65

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++ 
Sbjct: 66  AGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNID 125

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPD+GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+GD+G+S  G+QAR+MS
Sbjct: 126 ELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMS 185

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK
Sbjct: 186 QAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIK 245

Query: 241 D----KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
                KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  GELI +    +I+ K+G
Sbjct: 246 GTGDAKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLNIIKKAG 305

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           AW+S+  +++GQG EN+K +L ++ E+ + I+  +R   GL+ D    E    T  +   
Sbjct: 306 AWYSYNDEKIGQGSENAKKYLADHPEVFDEIDRQVRVRFGLIEDDQEGEA---TATETAG 362

Query: 357 DDTDNVE 363
             T+N+E
Sbjct: 363 KITENIE 369


>gi|307703979|ref|ZP_07640913.1| protein RecA [Streptococcus mitis SK597]
 gi|307622445|gb|EFO01448.1| protein RecA [Streptococcus mitis SK597]
          Length = 388

 Score =  348 bits (893), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 198/359 (55%), Positives = 270/359 (75%), Gaps = 7/359 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            ++ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG GG+PKGRI
Sbjct: 17  AEREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRI 74

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+
Sbjct: 75  IEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDS 134

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +S
Sbjct: 135 GEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGAS 194

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSI 245
           I+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     K++ 
Sbjct: 195 INKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKETN 254

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAW+S+K ++
Sbjct: 255 VGKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEK 314

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLV-ADSLLQEPAINTKDDADKDDTDNVE 363
           +GQG EN+K +L E+ EI + I+  +R   GL+  +   ++   N KD+A + D+ N E
Sbjct: 315 IGQGSENAKKYLAEHPEIFDEIDKQVRSKFGLIDGEEASEQDTENKKDEAAQVDSVNEE 373


>gi|217967549|ref|YP_002353055.1| recA protein [Dictyoglomus turgidum DSM 6724]
 gi|217336648|gb|ACK42441.1| recA protein [Dictyoglomus turgidum DSM 6724]
          Length = 356

 Score =  348 bits (893), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 197/327 (60%), Positives = 264/327 (80%), Gaps = 2/327 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           ++K KALE+A+ QI++ +GKGAIM+LGSQ      + V+ +G L LD ALG+GG P+GRI
Sbjct: 1   MEKEKALESAIFQIEKQFGKGAIMRLGSQERF--QVPVIPTGILTLDYALGVGGVPRGRI 58

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +E++GPE SGKTT+AL  IA +QK GG  AF+DAEHA D  YARK+GV+L+NLLISQPDT
Sbjct: 59  IELFGPEGSGKTTVALQIIASAQKMGGVAAFIDAEHAFDPNYARKIGVNLENLLISQPDT 118

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI ++LVRSG VD+IVIDSVAAL PRAE+EG+MG++  G+QARLMSQALRKLT  
Sbjct: 119 GEQALEIAEILVRSGGVDVIVIDSVAALVPRAELEGEMGDAFIGLQARLMSQALRKLTGV 178

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SK + +FINQ+R K+GV FG+PETT GG ALKFY+SVR+D+R+  S+K+   +TG +
Sbjct: 179 ISKSKTVAIFINQLREKVGVFFGNPETTPGGRALKFYASVRIDVRKAESMKEGSEVTGTK 238

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PF++ EF+++YGEGIS  G ++D GV+A ++++SG W+ +K  RLGQG
Sbjct: 239 VKVKVVKNKVAPPFREGEFELIYGEGISREGCILDAGVEAKVIERSGTWYIYKDIRLGQG 298

Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336
           REN+K +L+E+ EIA+ IE  +R+  G
Sbjct: 299 RENAKTYLKEHPEIADEIEREVRKLWG 325


>gi|118496737|ref|YP_897787.1| recombinase A protein [Francisella tularensis subsp. novicida U112]
 gi|194324044|ref|ZP_03057819.1| RecA protein [Francisella tularensis subsp. novicida FTE]
 gi|208779992|ref|ZP_03247335.1| RecA protein [Francisella novicida FTG]
 gi|254372103|ref|ZP_04987596.1| hypothetical protein FTCG_01244 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|166220646|sp|A0Q468|RECA_FRATN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|118422643|gb|ABK89033.1| recombinase A protein [Francisella novicida U112]
 gi|151569834|gb|EDN35488.1| hypothetical protein FTCG_01244 [Francisella novicida GA99-3549]
 gi|194321941|gb|EDX19424.1| RecA protein [Francisella tularensis subsp. novicida FTE]
 gi|208743996|gb|EDZ90297.1| RecA protein [Francisella novicida FTG]
 gi|328676192|gb|AEB27062.1| RecA protein [Francisella cf. novicida Fx1]
          Length = 359

 Score =  348 bits (893), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 219/347 (63%), Positives = 281/347 (80%), Gaps = 3/347 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           + K KALE+ALSQI++ +GKGAIM+LG Q +    I+V+ SG + LD+ALGIGG+PKGRI
Sbjct: 1   MSKEKALESALSQIEKQFGKGAIMRLGDQEAAH-DIDVIPSGIIALDVALGIGGYPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYG ESSGKTTL L  IAQ QK GGT AFVDAEHALD  YA+ LGVD+ NL++SQPDT
Sbjct: 60  IEIYGHESSGKTTLTLLAIAQCQKQGGTAAFVDAEHALDPKYAKLLGVDVDNLIVSQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSG VDI+VIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT++
Sbjct: 120 GEQALEIADMLVRSGGVDIVVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTAN 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I RS  +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRL++++ GSIKD   ++GN+
Sbjct: 180 IKRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLEVKKGGSIKDGIDVSGNE 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PFKQ +F+++YGEGIS   ELIDLG K +I++KSGAW+S+KG+++GQG
Sbjct: 240 IKVKVVKNKVAPPFKQADFELIYGEGISLEAELIDLGAKYNIIEKSGAWYSYKGKKIGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           +E SK +L+EN    + IE  + +   L+ +    + + ++  +  K
Sbjct: 300 KEKSKEYLKENTAERDEIERAILEL--LLPNKYPNKDSNDSPKEGSK 344


>gi|300122439|emb|CBK23010.2| Recombinase A protein (RecA) [Blastocystis hominis]
          Length = 398

 Score =  348 bits (893), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 196/351 (55%), Positives = 266/351 (75%), Gaps = 2/351 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K  AL+ A+ Q++  +GKG++M+LGS+  +   + V+S+GSL +D ALGIGG P+GRIVE
Sbjct: 46  KELALKNAIKQLETQFGKGSVMKLGSKSHL--DVPVISTGSLTVDHALGIGGLPRGRIVE 103

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALHT+A+ QKTGGTC F+DAEHALD +YA K+GV++ +L ISQPD+GE
Sbjct: 104 IYGPESSGKTTLALHTVAELQKTGGTCTFIDAEHALDPLYASKIGVNINDLYISQPDSGE 163

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSGA+D+IV+DSVAAL P+AE EG+MG++   +QARLMSQALRK+T S+S
Sbjct: 164 QALEIADCLVRSGAMDMIVVDSVAALVPKAEAEGNMGDAHMALQARLMSQALRKITGSLS 223

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           RS C+L+FINQ+R K+G++FG+PE T GGNALKFYSSVRLDIRR  +IK+ D + G +T 
Sbjct: 224 RSNCLLIFINQIRQKVGILFGNPEVTPGGNALKFYSSVRLDIRRKTAIKEGDEVIGYETV 283

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF+   FD+M+G GIS  GE++DL ++  I+ K GAW S++G+   QGR 
Sbjct: 284 VKVVKNKLAPPFRTASFDMMFGTGISKTGEILDLAIEDGIIQKKGAWLSYQGENFAQGRA 343

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
            +K +L  N E+  ++E  LR+      +   Q    + +++ ++ D  N 
Sbjct: 344 KAKEYLMANEELCRSLEEQLREKWKEQENQQGQSGGSSMEEEKEEQDIVNE 394


>gi|222528978|ref|YP_002572860.1| recA protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222455825|gb|ACM60087.1| recA protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 356

 Score =  348 bits (893), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 200/346 (57%), Positives = 268/346 (77%), Gaps = 2/346 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M  +DK KAL+  +  I++ YGKGAIM+LG      E I+V+ +G+L LDIALG+GG P+
Sbjct: 1   MENLDKKKALDKVIMDIEKAYGKGAIMKLGEMAK--ENIDVIPTGALSLDIALGVGGVPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYG ESSGKTT+ALH IA++QK GG  AF+DAEHALD  YA+KLGVD+ NL++SQ
Sbjct: 59  GRIVEIYGAESSGKTTIALHIIAEAQKMGGEAAFIDAEHALDPFYAKKLGVDINNLIVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+GEQALEI + LVRS A+D+IVIDSVAAL P+AEI+G+MGE+  G+QARLMSQALRKL
Sbjct: 119 PDSGEQALEIVEALVRSNAIDVIVIDSVAALVPQAEIDGEMGEAHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
               S++K  ++FINQ+R K+G+MFG+PETT GG ALKFY+SVRL++R+   IK +    
Sbjct: 179 AGITSKTKTTVIFINQLREKVGIMFGNPETTPGGRALKFYASVRLEVRKGEIIKSQGQPI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G++ +VKVVKNK+A PFK+ EFD++YGEGIS  G ++D+ V   ++ KSGAW+++ GQ++
Sbjct: 239 GSKVKVKVVKNKVAPPFKEAEFDLIYGEGISKEGNVLDVAVNIDVIQKSGAWYTYNGQKI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GQGREN+K FL+EN +I + I   +RQNA L  + +     I+ +D
Sbjct: 299 GQGRENAKQFLKENPDIMQEIIEKIRQNANLAFEKIKTTAEISDED 344


>gi|227432430|ref|ZP_03914418.1| recombination protein A [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227351796|gb|EEJ42034.1| recombination protein A [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 385

 Score =  348 bits (893), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 195/350 (55%), Positives = 263/350 (75%), Gaps = 5/350 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL +I++ +GKG++M LG        IE + SGS+ +D+ALG+GG+PKGRI+E
Sbjct: 18  RRAALDEALKKIEKNFGKGSVMTLGDNA--LTQIETIPSGSVKIDVALGVGGYPKGRIIE 75

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  YA  LGV    LL+SQPDTGE
Sbjct: 76  VYGPESSGKTTIALHAVAEVQKQGGTAAYIDAENALDVKYAEALGVKKDELLLSQPDTGE 135

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q LEI D LV+SGAVD+IV+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL  +++
Sbjct: 136 QGLEIADALVQSGAVDMIVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLAGTLN 195

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           R+  I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   IKD   +TGN T+
Sbjct: 196 RTGTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRSTQIKDGTDVTGNLTK 255

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNK+A PFK  E DIMYG GIS  GE++DL V   I+DK+GAW++++G+R+GQGRE
Sbjct: 256 VKIVKNKVAPPFKVAEVDIMYGHGISQTGEILDLAVDQDIIDKAGAWYAYEGERIGQGRE 315

Query: 312 NSKIFLR--ENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
            +K +L   E+  + + +   +RQ  G+ +++       NT+  A+K D 
Sbjct: 316 KAKDYLDDPEHSALRQELYVKVRQAYGIDSNA-NGTAVSNTEAQAEKSDE 364


>gi|145581054|gb|ABP87673.1| RecA [Burkholderia sp. 'isolate BCCU4']
          Length = 309

 Score =  348 bits (893), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 218/308 (70%), Positives = 268/308 (87%), Gaps = 1/308 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ 
Sbjct: 1   IMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEL 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVI
Sbjct: 60  QKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVI 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMF
Sbjct: 120 DSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMF 179

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+
Sbjct: 180 GNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDIL 239

Query: 272 YGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLL 331
           YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ +
Sbjct: 240 YGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRI 299

Query: 332 RQNAGLVA 339
           R++ G+VA
Sbjct: 300 RESLGVVA 307


>gi|149395000|gb|ABR27354.1| RecA [Burkholderia sp. ESR85]
          Length = 309

 Score =  348 bits (893), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 216/306 (70%), Positives = 266/306 (86%), Gaps = 1/306 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 3   GSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 61

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 62  ELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 121

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 122 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 181

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 182 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 241

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 242 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 301

Query: 330 LLRQNA 335
            +R++ 
Sbjct: 302 RIRESL 307


>gi|227893177|ref|ZP_04010982.1| recombination protein A [Lactobacillus ultunensis DSM 16047]
 gi|227865043|gb|EEJ72464.1| recombination protein A [Lactobacillus ultunensis DSM 16047]
          Length = 369

 Score =  348 bits (893), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 188/357 (52%), Positives = 267/357 (74%), Gaps = 2/357 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K  AL+AAL +I++ +GKGA+M++G +      I  VS+GSL LD A+G+GG+P+
Sbjct: 1   MAKDEKKAALDAALKKIEKNFGKGAVMRMGEKADT--QISTVSTGSLALDAAIGVGGYPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+ +L++SQ
Sbjct: 59  GRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL
Sbjct: 119 PNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + +IS++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR   IK    + 
Sbjct: 179 SGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGEVL 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ ++KVVKNK+A PFK  E DIMYG+GIS  GEL+D+     I+DK+G+W+S+K  R+
Sbjct: 239 GNRVKIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKSDRI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           GQGREN+K +L E+ +I ++I+  +R+  G+   S+          +  ++     E
Sbjct: 299 GQGRENAKKYLEEHPDIYQDIQEQVRKAYGIDKQSIADRENPERIKEKREEAQAKEE 355


>gi|149394996|gb|ABR27352.1| RecA [Burkholderia sp. ESR73]
 gi|296803042|gb|ADH51597.1| DNA recombinase [Burkholderia contaminans]
 gi|296803050|gb|ADH51601.1| DNA recombinase [Burkholderia contaminans]
 gi|296803064|gb|ADH51608.1| DNA recombinase [Burkholderia contaminans]
 gi|296803098|gb|ADH51625.1| DNA recombinase [Burkholderia contaminans]
 gi|296803102|gb|ADH51627.1| DNA recombinase [Burkholderia contaminans]
 gi|296803108|gb|ADH51630.1| DNA recombinase [Burkholderia contaminans]
 gi|296803112|gb|ADH51632.1| DNA recombinase [Burkholderia contaminans]
          Length = 305

 Score =  348 bits (893), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 216/306 (70%), Positives = 266/306 (86%), Gaps = 1/306 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQNA 335
            +R++ 
Sbjct: 300 RIRESL 305


>gi|296837423|gb|ADH59570.1| DNA recombinase [Burkholderia lata]
          Length = 305

 Score =  348 bits (893), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 217/306 (70%), Positives = 267/306 (87%), Gaps = 1/306 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+
Sbjct: 60  AELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG
Sbjct: 120 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  F
Sbjct: 180 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 239

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           DI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE
Sbjct: 240 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 299

Query: 329 SLLRQN 334
           + +R++
Sbjct: 300 NRIRES 305


>gi|288818102|ref|YP_003432450.1| RecA protein [Hydrogenobacter thermophilus TK-6]
 gi|288787502|dbj|BAI69249.1| RecA protein [Hydrogenobacter thermophilus TK-6]
 gi|308751703|gb|ADO45186.1| recA protein [Hydrogenobacter thermophilus TK-6]
          Length = 338

 Score =  348 bits (892), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 190/335 (56%), Positives = 251/335 (74%), Gaps = 2/335 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           +E   V+K KALE+ LS I+R +GKG+IM L +   +   ++V+ +GSL LDIA GIGG 
Sbjct: 3   EEKETVEKRKALESVLSVIERKFGKGSIMPLKNAEKV--KVDVIPTGSLSLDIATGIGGI 60

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EI+GPESSGKTTLALH IA +Q+ GG   F+DAEHALD  YA K+GV+ ++L I
Sbjct: 61  PKGRIIEIFGPESSGKTTLALHVIASAQRMGGVAVFIDAEHALDPKYAEKIGVNTESLYI 120

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI + LV S AVD+IV+DSVAAL P+ E+EG+MGE+  G QARLMSQALR
Sbjct: 121 SQPDYGEQALEIVESLVASNAVDVIVVDSVAALVPKDELEGEMGEAHVGKQARLMSQALR 180

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KL     ++   ++FINQ+R KIGVMFG+PETT GG ALKF++ +RLD+R+VG IKD + 
Sbjct: 181 KLKGMAHKANTAIIFINQLREKIGVMFGNPETTPGGRALKFFADMRLDVRKVGDIKDSND 240

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
             GN+ RVKVVKNK+A PF++ EFD++YGEGI    +LID+  +  ++++SGAW+S+   
Sbjct: 241 KVGNRVRVKVVKNKLAPPFQEAEFDVIYGEGICKLCDLIDIATELKVLNRSGAWYSYGEL 300

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +LGQG++  K FL EN E+A  IE  +R+  GL  
Sbjct: 301 KLGQGKDQVKKFLMENPELAGEIEQKVREVVGLAP 335


>gi|73667500|ref|YP_303516.1| recombinase A [Ehrlichia canis str. Jake]
 gi|123732180|sp|Q3YQT7|RECA_EHRCJ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|72394641|gb|AAZ68918.1| RecA bacterial DNA recombination protein [Ehrlichia canis str.
           Jake]
          Length = 357

 Score =  348 bits (892), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 221/340 (65%), Positives = 281/340 (82%), Gaps = 3/340 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   K +N  ++ KAL+ A+SQI++ +G+GAIM+L  +    E I+ +S+GS+ LD ALG
Sbjct: 1   MSDSKNLN-QERQKALDNAISQIEKAFGRGAIMKL--KQGAIEKIDSISTGSIALDTALG 57

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGGFPKGRIVEI+GPESSGKTTLALH IA+SQK GG CAF+DAEHALD +YARKLGV+  
Sbjct: 58  IGGFPKGRIVEIFGPESSGKTTLALHVIAESQKKGGNCAFIDAEHALDIMYARKLGVNTG 117

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +L++SQPDTGEQAL I + LV SGA+D+IV+DSVAALTPRAEIEGDMG+   G+QARL+S
Sbjct: 118 DLIVSQPDTGEQALHIVEYLVCSGAIDVIVVDSVAALTPRAEIEGDMGDQHMGLQARLLS 177

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
            ALRKLTS +S++ C+L+FINQ+RMKIGV++G+PETTTGGNALKFYSSVRLDIR+V +IK
Sbjct: 178 HALRKLTSIVSKANCVLIFINQIRMKIGVVYGNPETTTGGNALKFYSSVRLDIRKVSAIK 237

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           DKD I GNQT+VKVVKNK+A PFKQV+FDIMY EGIS  GE+ID+GVK +I++K+GA++S
Sbjct: 238 DKDLIIGNQTKVKVVKNKVAPPFKQVDFDIMYNEGISKVGEIIDMGVKLNIIEKAGAYYS 297

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           + G RLGQG+EN+K +L+ N   A+ IE  +R      +D
Sbjct: 298 YNGIRLGQGKENAKSYLKTNYTTADEIEQKIRNMLASDSD 337


>gi|169350624|ref|ZP_02867562.1| hypothetical protein CLOSPI_01396 [Clostridium spiroforme DSM 1552]
 gi|169292678|gb|EDS74811.1| hypothetical protein CLOSPI_01396 [Clostridium spiroforme DSM 1552]
          Length = 343

 Score =  348 bits (892), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 186/328 (56%), Positives = 262/328 (79%), Gaps = 2/328 (0%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           +       K +AL+ A+ QI++ YGKG++M+LG + ++   ++V+ +GSL LD+ALGIGG
Sbjct: 7   KDNKEDAKKVQALDDAIKQIEKKYGKGSVMKLGDRVAV--SVDVIPTGSLTLDLALGIGG 64

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
           +PKGRI+EIYGPESSGKTTL LH IA+ QK GG  AF+DAEHA+D +YA+ LGV++  L+
Sbjct: 65  YPKGRIIEIYGPESSGKTTLTLHAIAECQKQGGRAAFIDAEHAIDPVYAQNLGVNIDELI 124

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPD+GEQ LEI + LVRSGA+D++V+DSVAAL P+ E++G+MG++  G+QARLMS+AL
Sbjct: 125 LSQPDSGEQGLEIAETLVRSGAIDLVVVDSVAALVPQVELDGEMGDAQMGLQARLMSKAL 184

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RK+ + +++S+C ++FINQ+R KIGVMFG+PETTTGG ALKFYSSVR++IRR  +IK   
Sbjct: 185 RKIAAELNKSECTIIFINQLREKIGVMFGNPETTTGGRALKFYSSVRIEIRRGEAIKQGT 244

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            I GN+T +KVVKNK+A PFK  + DI+YG+GIS  GE++DL V+  IV+KSGAW+++KG
Sbjct: 245 EIVGNKTNIKVVKNKVAPPFKTTQVDIIYGKGISRDGEVLDLAVENDIVEKSGAWYAYKG 304

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLL 331
           +++GQGREN+K +L  + +I E I   +
Sbjct: 305 EKIGQGRENAKTYLTTHPDIMEEITQTI 332


>gi|42526384|ref|NP_971482.1| recombinase A [Treponema denticola ATCC 35405]
 gi|60392998|sp|P62221|RECA_TREDE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|41816496|gb|AAS11363.1| recA protein [Treponema denticola ATCC 35405]
          Length = 414

 Score =  348 bits (892), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 209/352 (59%), Positives = 275/352 (78%), Gaps = 4/352 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  DK KALEAA  QI++ +G+G++M+LG+  +I   IE++ SGS+ LD ALGIGG+P+G
Sbjct: 13  NPDDKLKALEAARLQIEKQFGQGSLMKLGNNSAIGN-IEIIPSGSILLDEALGIGGYPRG 71

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EI+GPESSGKTT+ALH +A++QK GG  AF+DAEHALD  YA+ LGV++  L +SQP
Sbjct: 72  RIIEIFGPESSGKTTIALHAVAEAQKQGGIAAFIDAEHALDPQYAKALGVNIDELWVSQP 131

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI + LVRSGAVD+IVIDSVAALTP+AEI G+MG+S  G+QARLMSQALRKLT
Sbjct: 132 DTGEQALEIAESLVRSGAVDVIVIDSVAALTPQAEIAGEMGDSHMGLQARLMSQALRKLT 191

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI-KDKDSIT 246
           + I +S C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLD+R++ ++ KD D   
Sbjct: 192 AIIGKSNCMIIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDVRKIETLGKDDDEAW 251

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ RVKVVKNK+A PF++VE +I++G+G+  +G L+D  VK  I+ KSG+W+S+   ++
Sbjct: 252 GNKIRVKVVKNKVAPPFRKVEMEILFGKGVCPYGSLLDSAVKQEIIGKSGSWYSYGDDKI 311

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNA--GLVADSLLQEPAINTKDDADK 356
           GQGR N+  FL ENI+IA+ IE  LR+    G    S   E     K+  +K
Sbjct: 312 GQGRPNAVKFLEENIDIAQKIEKELREKLFPGRPFVSSFVEKTKEQKEAQEK 363


>gi|315636740|ref|ZP_07891969.1| recombination protein A [Arcobacter butzleri JV22]
 gi|315478957|gb|EFU69661.1| recombination protein A [Arcobacter butzleri JV22]
          Length = 349

 Score =  348 bits (892), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 207/349 (59%), Positives = 276/349 (79%), Gaps = 4/349 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ K+LE A+ QI + +GKG +++LG +  I   +E +S+GSLGLD+ALG+GG P+GR++
Sbjct: 4   NQKKSLELAIKQIDKAFGKGTLIRLGDKEVI--PVETISTGSLGLDLALGVGGLPRGRVI 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA++QK GG CAF+DAEHALD  YA+ +GVD  NLL+SQPD G
Sbjct: 62  EIYGPESSGKTTLTLHAIAEAQKAGGVCAFIDAEHALDVKYAKDIGVDTDNLLVSQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + ++RSGAVD++V+DSVAALTP+ EI+GDM +   G+QARLMS+ALRK+T  +
Sbjct: 122 EQALEILETVIRSGAVDLVVVDSVAALTPKVEIDGDMDDQQVGVQARLMSKALRKVTGLL 181

Query: 191 SRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           S+  C ++FINQ+RMKI    +GSPETTTGGNALKFYSSVRLDIRR+ ++K  ++  GN+
Sbjct: 182 SKMNCTVIFINQIRMKIGMTGYGSPETTTGGNALKFYSSVRLDIRRIATLKQGENSIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A+PFKQ EFDIM+GEGIS  GEL+D GVK  IVDK+GAWFS+   ++GQG
Sbjct: 242 VKVKVVKNKVAAPFKQAEFDIMFGEGISKTGELVDYGVKLDIVDKAGAWFSYGDSKIGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           RENSK+FL++N E+A  IE+ + ++ G V D L+     ++ D +  DD
Sbjct: 302 RENSKVFLKDNPEVAREIENKILESMG-VNDELITSGTDDSDDISGLDD 349


>gi|307711310|ref|ZP_07647730.1| protein RecA [Streptococcus mitis SK321]
 gi|307616826|gb|EFN96006.1| protein RecA [Streptococcus mitis SK321]
          Length = 384

 Score =  348 bits (892), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 199/367 (54%), Positives = 271/367 (73%), Gaps = 9/367 (2%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +D   +    ++ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG
Sbjct: 8   LDEISKKFGAEREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALG 65

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++ 
Sbjct: 66  SGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNID 125

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MS
Sbjct: 126 ELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMS 185

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK
Sbjct: 186 QAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIK 245

Query: 241 ----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
                KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+G
Sbjct: 246 GTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIKKAG 305

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           AW+S+K +++GQG EN+K +L +N E+   I+  +R   GL+     +E A + KD+  +
Sbjct: 306 AWYSYKDEKIGQGSENAKKYLADNPEVFAEIDHQVRVQFGLIDG---EEAAESKKDEVAQ 362

Query: 357 DDTDNVE 363
            D+ N E
Sbjct: 363 VDSVNEE 369


>gi|325473329|gb|EGC76524.1| recA [Treponema denticola F0402]
          Length = 414

 Score =  348 bits (892), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 210/352 (59%), Positives = 275/352 (78%), Gaps = 4/352 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  DK KALEAA  QI++ +G+G++M+LG+  +I   IE++ SGS+ LD ALGIGG+P+G
Sbjct: 13  NPDDKLKALEAARLQIEKQFGQGSLMKLGNNSAIGN-IEIIPSGSILLDEALGIGGYPRG 71

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EI+GPESSGKTT+ALH +A++QK GG  AF+DAEHALD  YA+ LGV++  L +SQP
Sbjct: 72  RIIEIFGPESSGKTTIALHAVAEAQKQGGIAAFIDAEHALDPQYAKALGVNIDELWVSQP 131

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI + LVRSGAVDIIVIDSVAALTP+AEI G+MG+S  G+QARLMSQALRKLT
Sbjct: 132 DTGEQALEIAESLVRSGAVDIIVIDSVAALTPQAEIAGEMGDSHMGLQARLMSQALRKLT 191

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI-KDKDSIT 246
           + I +S C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLD+R++ ++ KD D   
Sbjct: 192 AIIGKSNCMIIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDVRKIETLGKDDDEAW 251

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ RVKVVKNK+A PF++VE +I++G+G+  +G L+D  VK  I+ KSG+W+S+   ++
Sbjct: 252 GNKIRVKVVKNKVAPPFRKVEMEILFGKGVCPYGSLLDSAVKQEIIGKSGSWYSYGDDKI 311

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNA--GLVADSLLQEPAINTKDDADK 356
           GQGR N+  FL ENI+IA+ IE  LR+    G    S   E     K+  +K
Sbjct: 312 GQGRPNAVKFLEENIDIAQKIEKELREKLFPGRPFVSSFVEKTKEQKEAQEK 363


>gi|31540553|gb|AAP49239.1| RecA [Mycobacterium mucogenicum]
          Length = 305

 Score =  348 bits (892), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 195/302 (64%), Positives = 247/302 (81%), Gaps = 2/302 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE AL+QI + +GKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 6   PDREKALELALAQIDKSFGKGSVMRLGEETR--QPISVIPTGSIALDVALGIGGLPRGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD   LL+SQPDT
Sbjct: 64  IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 124 GEQALEIADMLVRSGAIDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+
Sbjct: 184 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVK+VKNK+A PFKQ EFDI+YG GIS  G LID+GV+   + KSG+WF++ G++LGQG
Sbjct: 244 TRVKIVKNKVAPPFKQAEFDILYGRGISREGSLIDMGVEHGFIRKSGSWFTYDGEQLGQG 303

Query: 310 RE 311
           +E
Sbjct: 304 KE 305


>gi|327403650|ref|YP_004344488.1| Protein recA [Fluviicola taffensis DSM 16823]
 gi|327319158|gb|AEA43650.1| Protein recA [Fluviicola taffensis DSM 16823]
          Length = 343

 Score =  348 bits (892), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 209/339 (61%), Positives = 274/339 (80%), Gaps = 3/339 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           KE+N  +K KAL+  + ++ + +GKG++M+LG   S  E IEV+ SGS+ LDIALG+ G+
Sbjct: 4   KEVN-PEKLKALQLTMEKLDKTFGKGSVMKLGD--SAIEEIEVIPSGSITLDIALGVNGY 60

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRIVEIYGPESSGKTTLA+H IA+ QK GG  AF+DAEHA D  YA+KLGVD++NLLI
Sbjct: 61  PKGRIVEIYGPESSGKTTLAIHAIAECQKNGGIAAFIDAEHAFDQFYAQKLGVDIENLLI 120

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI D L+RSGAVD++VIDSVAALTP+AEIEG+MG+S  G+QARLMS+ALR
Sbjct: 121 SQPDNGEQALEIADSLIRSGAVDLLVIDSVAALTPKAEIEGEMGDSQMGLQARLMSKALR 180

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT SIS++KC  +FINQ+R KIGVMFG+PETTTGGNALKFY+S+R+DIRR   IK+ + 
Sbjct: 181 KLTGSISKAKCCCIFINQLRDKIGVMFGNPETTTGGNALKFYASMRIDIRRSAQIKEGED 240

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + GN+ +VKVVKNK+A PF++ EFDIMYGEGIS  GE+ID+GV+ +I+ KSG+WFS+   
Sbjct: 241 VIGNRIKVKVVKNKVAPPFRKAEFDIMYGEGISKVGEIIDIGVELNILKKSGSWFSYGET 300

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343
           RLGQGR++ K  + +N E+ + +E+ ++   G    +++
Sbjct: 301 RLGQGRDSVKNMIADNPELMDELEAKIKDALGANPTAVV 339


>gi|116627024|ref|YP_819643.1| recombinase A [Streptococcus thermophilus LMD-9]
 gi|122268371|sp|Q03MX5|RECA_STRTD RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|116100301|gb|ABJ65447.1| RecA protein [Streptococcus thermophilus LMD-9]
          Length = 379

 Score =  348 bits (892), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 197/363 (54%), Positives = 270/363 (74%), Gaps = 12/363 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+G+MFG+PETT GG ALKFY+SVRLD+R    IK     KD   
Sbjct: 196 NKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDKKDQNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDIGIIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV---ADSLLQEPAINTKDDA---DKDDTD 360
           GQG EN+K +L ++ EI   I+  +R + GL+    D ++++  +    D    D D T 
Sbjct: 316 GQGSENAKKYLADHPEIFAEIDHKVRVHYGLIELDEDDVVEDTQVEDTSDELILDLDSTI 375

Query: 361 NVE 363
            +E
Sbjct: 376 EIE 378


>gi|296803062|gb|ADH51607.1| DNA recombinase [Burkholderia contaminans]
          Length = 305

 Score =  348 bits (892), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 216/306 (70%), Positives = 266/306 (86%), Gaps = 1/306 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+
Sbjct: 1   SIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IV
Sbjct: 60  LQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM
Sbjct: 120 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 179

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI
Sbjct: 180 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 239

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
           +YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ 
Sbjct: 240 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 299

Query: 331 LRQNAG 336
           +R++ G
Sbjct: 300 IRESLG 305


>gi|210633076|ref|ZP_03297643.1| hypothetical protein COLSTE_01551 [Collinsella stercoris DSM 13279]
 gi|210159230|gb|EEA90201.1| hypothetical protein COLSTE_01551 [Collinsella stercoris DSM 13279]
          Length = 365

 Score =  348 bits (892), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 197/344 (57%), Positives = 261/344 (75%), Gaps = 1/344 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ K ++   ++I + +G G+IM+ G  G   E +E + +G++ LD ALGIGG P+GRI+
Sbjct: 19  EREKMIQVTKAEIIKKFGDGSIMRYGDGGPELE-VEAIPTGAISLDAALGIGGVPRGRII 77

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL+L  +A++Q  GG  AF+DAEHALD  YA ++GVD+  +LISQPDTG
Sbjct: 78  EIFGPESSGKTTLSLEILAEAQAMGGVAAFIDAEHALDPTYAARIGVDIDEVLISQPDTG 137

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D++VIDSVAAL PRAEIEG++GE+  G+QARLMSQALRKL  S+
Sbjct: 138 EQALEICDMLVRSGAIDVVVIDSVAALVPRAEIEGEIGETTVGLQARLMSQALRKLAGSL 197

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S    +FINQ+R KIGVMFGSPETTTGG ALKF+SSVR+DIRR+ SIK KD I GN+ 
Sbjct: 198 SKSNTTCIFINQLREKIGVMFGSPETTTGGRALKFFSSVRIDIRRIESIKIKDEIVGNRV 257

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R K+VKNK+A+PF+  EFDIMYG GIS  G ++D+ V+  I  KSGAW+++ G+RLGQGR
Sbjct: 258 RAKIVKNKVAAPFRTAEFDIMYGTGISKEGSVLDMAVEYEIATKSGAWYTYDGERLGQGR 317

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           E +K  LR+N E+ + ++  +R   GL  +       ++  DDA
Sbjct: 318 EAAKDTLRKNPELLDELDHKVRVACGLELEDEPVGTVVDPGDDA 361


>gi|148238775|ref|YP_001224162.1| recombinase A [Synechococcus sp. WH 7803]
 gi|166220689|sp|A5GIV0|RECA_SYNPW RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|147847314|emb|CAK22865.1| RecA protein (recombinase A) [Synechococcus sp. WH 7803]
          Length = 382

 Score =  348 bits (892), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 191/330 (57%), Positives = 255/330 (77%), Gaps = 3/330 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           ++   ++ +AL   L QI+R +GKG+IM+LG    +   +E +S+G+L LD+ALG GG+P
Sbjct: 14  DVRPGERDQALNLVLGQIERNFGKGSIMRLGDASRMR--VETISTGALTLDLALG-GGYP 70

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR+VE+YGPESSGKTTL LH IA+ Q+ GG  AFVDAEHALD +YA  LGVD++NLL+S
Sbjct: 71  KGRVVEVYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASLGVDIENLLVS 130

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGE ALEI D LVRS AVDI+V+DSVAALTPRAEIEG+MG+   G QARLMSQA+RK
Sbjct: 131 QPDTGEMALEIVDQLVRSAAVDIVVVDSVAALTPRAEIEGEMGDLAVGSQARLMSQAMRK 190

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           +T +I +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K     
Sbjct: 191 ITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEE 250

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            G + +VKV KNK+A PF+  EFDI++G GIS  G L+DL  +  +V + GAW+S++G  
Sbjct: 251 YGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVTRKGAWYSYEGDN 310

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNA 335
           +GQGR+N+  +L +N E  + IE+L+RQ  
Sbjct: 311 IGQGRDNTIGWLEQNPEAKDTIETLVRQKL 340


>gi|255321321|ref|ZP_05362483.1| protein RecA [Campylobacter showae RM3277]
 gi|255301640|gb|EET80895.1| protein RecA [Campylobacter showae RM3277]
          Length = 366

 Score =  348 bits (892), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 211/356 (59%), Positives = 273/356 (76%), Gaps = 5/356 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  DK KAL+AAL QI + +GKG +++LG +    E I+ +S+GSLGLD+ALGIGG PKG
Sbjct: 15  NDSDKKKALDAALKQIDKAFGKGTLIRLGDKQ--VEAIDSISTGSLGLDLALGIGGIPKG 72

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+E+YGPESSGKTTL LH IA++QK G TCAF+DAEHALD  YA  LGVD +NL +SQP
Sbjct: 73  RIIEVYGPESSGKTTLTLHIIAEAQKAGATCAFIDAEHALDVKYAANLGVDTENLYVSQP 132

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI + L RSGAV++IV+DSVAALTP++EIEGDMG+   G+QARLMSQALRKL 
Sbjct: 133 DFGEQALEIVENLARSGAVELIVVDSVAALTPKSEIEGDMGDQHVGLQARLMSQALRKLA 192

Query: 188 SSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
             + +    ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R++ ++K  +   
Sbjct: 193 GVVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKIATLKQNEEPI 252

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+T+VKVVKNK+A PFK  EFDIM+GEGIS  GE+ID GVK  I+DKSGAWFS+K  ++
Sbjct: 253 GNRTKVKVVKNKVAPPFKTAEFDIMFGEGISRDGEIIDYGVKLDIIDKSGAWFSYKAAKI 312

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           GQGREN+K +L+E+ EI++ I + ++ + GL  D L+        DD   ++    
Sbjct: 313 GQGRENAKAYLKEHPEISDEIVATIKSSIGL--DKLISGAGGKDSDDESIEENTEE 366


>gi|312128903|ref|YP_003996243.1| reca protein [Leadbetterella byssophila DSM 17132]
 gi|311905449|gb|ADQ15890.1| recA protein [Leadbetterella byssophila DSM 17132]
          Length = 346

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 202/345 (58%), Positives = 266/345 (77%), Gaps = 3/345 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
              DK K L++ L ++ + +GKG +M+L     +   + V+S+GSLGLD+ALG+ G PKG
Sbjct: 4   ENADKLKILQSTLDKLDKSFGKGTVMRLSDTKVL--DVPVISTGSLGLDLALGVNGLPKG 61

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R++EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D +YA KLG+D KNLLISQP
Sbjct: 62  RVIEIYGPESSGKTTLAMHAIAEAQKQGGIAAFIDAEHAFDRVYAEKLGIDTKNLLISQP 121

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI + L+ SGA+DI VIDSVAAL P+AE++G+MG+S  G+QARLMSQALRKLT
Sbjct: 122 DYGEQALEIAEHLIASGAIDICVIDSVAALVPKAELDGEMGDSKMGLQARLMSQALRKLT 181

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SIT 246
            +I+++ C  +FINQ+R KIGVMFGSPETTTGGNALKFY+S+R+DIRR+G IKD + +I 
Sbjct: 182 GTINKTGCTCIFINQLRDKIGVMFGSPETTTGGNALKFYASIRIDIRRIGQIKDNEGNII 241

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFK +EFDIMYGEG+S  GE++DL V   I+ KSG+WFS+   RL
Sbjct: 242 GNRTRVKVVKNKVAPPFKVIEFDIMYGEGVSKSGEVLDLAVDLDIIKKSGSWFSYGADRL 301

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           GQGR+  K  +++N E+  +IE  ++      AD+L+ +     +
Sbjct: 302 GQGRDAVKALIKDNPELMADIEEKIKATVAGNADALMDKSGSIEE 346


>gi|224372328|ref|YP_002606700.1| recombinase A [Nautilia profundicola AmH]
 gi|254790439|sp|B9L7U2|RECA_NAUPA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|223589265|gb|ACM93001.1| protein RecA [Nautilia profundicola AmH]
          Length = 350

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 209/344 (60%), Positives = 268/344 (77%), Gaps = 3/344 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KALE A+ QI + +GKG++++L  +    E I  + +GS GLD+ALGIGG PKGRI
Sbjct: 3   ANKQKALELAMKQIDKQFGKGSLVKLSDKD--IEPIAAIPTGSFGLDLALGIGGIPKGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
            EIYGPESSGKTTLAL  IAQ+QK GG  AF+DAEHALD IYA+ +GVD+ NLL+SQPD 
Sbjct: 61  TEIYGPESSGKTTLALSIIAQAQKDGGVAAFIDAEHALDVIYAKHIGVDVDNLLVSQPDY 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + L RSGAVDIIVIDSVAALTP+AEIEG+MG++  G+QARLMSQALRKLT++
Sbjct: 121 GEQALEIVETLARSGAVDIIVIDSVAALTPKAEIEGNMGDAQVGVQARLMSQALRKLTAA 180

Query: 190 ISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           I +    +VFINQ+RMKIG+M +GSPETTTGGNALKFYSSVRLD+RR+ ++K  D   GN
Sbjct: 181 IHKMNTTVVFINQIRMKIGMMGYGSPETTTGGNALKFYSSVRLDVRRIATLKQADKEVGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + +VKVVKNK+A PF+  EFDIM+G+GIS  GEL+D GVK  I+DKSGAWFS+   RLGQ
Sbjct: 241 RVKVKVVKNKVAPPFRIAEFDIMFGKGISREGELLDYGVKLDIIDKSGAWFSYGATRLGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           G+EN+K +L+ + E+A+ IE  ++   G+    +++    +  +
Sbjct: 301 GKENAKEYLKSHPELAQEIEQKIKDALGVELSHMIEAIEKDEDE 344


>gi|28971925|dbj|BAC65339.1| RecA [Campylobacter lari]
 gi|28971927|dbj|BAC65340.1| RecA [Campylobacter lari]
          Length = 344

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 211/349 (60%), Positives = 272/349 (77%), Gaps = 9/349 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+AAL  + + +GKG I++LG +    E I+ + +GS+GLD+ALGIGG PKGRI+
Sbjct: 4   NKRKSLDAALKSLDKTFGKGTILRLGDKE--VEKIDSIPTGSVGLDLALGIGGVPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD  YA+ LGVD +NL ISQPD G
Sbjct: 62  EIYGPESSGKTTLTLHIIAECQKKGGVCAFIDAEHALDVRYAKNLGVDTENLYISQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSGA+D+IV+DSVAALTP+AEIEGDMG+   G+QARLMSQALRKLT  +
Sbjct: 122 EQALEIVETIARSGAIDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRKLTGIV 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIG+M +G+PETTTGGNALKFY+SVRLD+R+  ++K  D   GN+
Sbjct: 182 HKMNTTVIFINQIRMKIGMMGYGTPETTTGGNALKFYASVRLDVRKTATLKQNDEPIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKV KNK+A PFKQ EFD+M+GEG+S  GELID GVK  I+DKSGAWFS+K  +LGQG
Sbjct: 242 VKVKVAKNKVAPPFKQAEFDVMFGEGVSREGELIDYGVKLDIIDKSGAWFSYKASKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           REN+K FL+EN  IA+ I   ++ + G+  DS++    +  K+D + DD
Sbjct: 302 RENAKAFLKENPAIADEITQAIQNSIGI--DSMI----LGAKEDDEGDD 344


>gi|157738440|ref|YP_001491124.1| recombinase A [Arcobacter butzleri RM4018]
 gi|166918707|sp|A8EWY1|RECA_ARCB4 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|157700294|gb|ABV68454.1| DNA-dependent ATPase, RecA [Arcobacter butzleri RM4018]
          Length = 349

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 207/349 (59%), Positives = 277/349 (79%), Gaps = 4/349 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ K+LE A+ QI + +GKG +++LG +  I   +E +S+GSLGLD+ALG+GG P+GR++
Sbjct: 4   NQKKSLELAIKQIDKAFGKGTLIRLGDKEVI--PVETISTGSLGLDLALGVGGLPRGRVI 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA++QK GG CAF+DAEHALD  YA+++GVD  NLL+SQPD G
Sbjct: 62  EIYGPESSGKTTLTLHAIAEAQKAGGVCAFIDAEHALDVKYAKEIGVDTDNLLVSQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + ++RSGAVD++V+DSVAALTP+ EI+GDM +   G+QARLMS+ALRK+T  +
Sbjct: 122 EQALEILETVIRSGAVDLVVVDSVAALTPKVEIDGDMDDQQVGVQARLMSKALRKVTGLL 181

Query: 191 SRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           S+  C ++FINQ+RMKI    +GSPETTTGGNALKFYSSVRLDIRR+ ++K  ++  GN+
Sbjct: 182 SKMNCTVIFINQIRMKIGMTGYGSPETTTGGNALKFYSSVRLDIRRIATLKQGENSIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A+PFKQ EFDIM+GEGIS  GEL+D GVK  IVDK+GAWFS+   ++GQG
Sbjct: 242 VKVKVVKNKVAAPFKQAEFDIMFGEGISKTGELVDYGVKLDIVDKAGAWFSYGDSKIGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           RENSK+FL++N E+A  IE+ + ++ G V D L+     ++ D +  DD
Sbjct: 302 RENSKVFLKDNPEVAREIENKILESMG-VNDELITSGTDDSDDISGLDD 349


>gi|149395002|gb|ABR27355.1| RecA [Burkholderia sp. ESR90]
          Length = 310

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 216/306 (70%), Positives = 266/306 (86%), Gaps = 1/306 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 5   GSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 63

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 64  ELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 123

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 124 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 183

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 184 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 243

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 244 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 303

Query: 330 LLRQNA 335
            +R++ 
Sbjct: 304 RIRESL 309


>gi|87300918|ref|ZP_01083760.1| recombinase A [Synechococcus sp. WH 5701]
 gi|87284789|gb|EAQ76741.1| recombinase A [Synechococcus sp. WH 5701]
          Length = 399

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 192/331 (58%), Positives = 252/331 (76%), Gaps = 3/331 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            ++ KAL   L QI+R +GKG+IM+LG    +   +E + +G+L LD+ALG GG+PKGR+
Sbjct: 26  AERDKALNLVLGQIERNFGKGSIMRLGDASRMR--VETMPTGALTLDLALG-GGYPKGRV 82

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VE+YGPESSGKTTL LH IA++Q+ GG  AFVDAEHALD +YA  LGVD++NLL+SQPDT
Sbjct: 83  VEVYGPESSGKTTLTLHAIAEAQRRGGVAAFVDAEHALDPVYAAALGVDVENLLVSQPDT 142

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GE ALEI D LVRS AVDI+V+DSVAALTPRAEIEG+MG+   G QARLMSQA+RK+T +
Sbjct: 143 GEMALEIVDQLVRSAAVDIVVVDSVAALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGN 202

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I +S C ++F+NQ+R KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K      G +
Sbjct: 203 IGKSGCTVIFLNQLRQKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIR 262

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKV KNK+A PF+  EFDI++G GIS  G +IDL  +  +V + GAW+S+ G  +GQG
Sbjct: 263 AKVKVAKNKVAPPFRIAEFDILFGRGISTLGCVIDLAEETGVVIRKGAWYSYGGDNIGQG 322

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           R+N+  +L +N E  E IE+ +R+     AD
Sbjct: 323 RDNTINWLEQNPEQKEQIEAEVRRRLTEGAD 353


>gi|296837445|gb|ADH59581.1| DNA recombinase [Burkholderia vietnamiensis]
 gi|296837447|gb|ADH59582.1| DNA recombinase [Burkholderia vietnamiensis]
          Length = 304

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 216/305 (70%), Positives = 267/305 (87%), Gaps = 1/305 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQN 334
            +R++
Sbjct: 300 RIRES 304


>gi|149395004|gb|ABR27356.1| RecA [Burkholderia cenocepacia]
          Length = 309

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 216/306 (70%), Positives = 266/306 (86%), Gaps = 1/306 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 5   GSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 63

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 64  ELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 123

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 124 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 183

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 184 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 243

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 244 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 303

Query: 330 LLRQNA 335
            +R++ 
Sbjct: 304 RIRESL 309


>gi|56708748|ref|YP_170644.1| recombinase A [Francisella tularensis subsp. tularensis SCHU S4]
 gi|89255461|ref|YP_512822.1| recombinase A [Francisella tularensis subsp. holarctica LVS]
 gi|110671220|ref|YP_667777.1| recombinase A [Francisella tularensis subsp. tularensis FSC198]
 gi|115313990|ref|YP_762713.1| recombinase A [Francisella tularensis subsp. holarctica OSU18]
 gi|134302775|ref|YP_001122743.1| recombinase A [Francisella tularensis subsp. tularensis WY96-3418]
 gi|156501383|ref|YP_001427448.1| recombinase A [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|167009297|ref|ZP_02274228.1| RecA protein [Francisella tularensis subsp. holarctica FSC200]
 gi|187932296|ref|YP_001892281.1| recombinase A [Francisella tularensis subsp. mediasiatica FSC147]
 gi|224457954|ref|ZP_03666427.1| recombinase A [Francisella tularensis subsp. tularensis MA00-2987]
 gi|254366869|ref|ZP_04982907.1| recombinase A protein [Francisella tularensis subsp. holarctica
           257]
 gi|254368442|ref|ZP_04984459.1| recombinase A protein [Francisella tularensis subsp. holarctica
           FSC022]
 gi|254371359|ref|ZP_04987360.1| recombinase A protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875611|ref|ZP_05248321.1| recombination protein RecA [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|290953099|ref|ZP_06557720.1| recombinase A [Francisella tularensis subsp. holarctica URFT1]
 gi|295313685|ref|ZP_06804268.1| recombinase A [Francisella tularensis subsp. holarctica URFT1]
 gi|76363331|sp|Q5NE98|RECA_FRATT RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|122325945|sp|Q0BPA8|RECA_FRATO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123094555|sp|Q2A629|RECA_FRATH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123359336|sp|Q14FQ1|RECA_FRAT1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166220645|sp|A7N939|RECA_FRATF RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166220647|sp|A4J0C1|RECA_FRATW RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238691520|sp|B2SEE2|RECA_FRATM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|56605240|emb|CAG46383.1| Recombinase A protein [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|89143292|emb|CAJ78453.1| Recombinase A protein [Francisella tularensis subsp. holarctica
           LVS]
 gi|110321553|emb|CAL09766.1| Recombinase A protein [Francisella tularensis subsp. tularensis
           FSC198]
 gi|115128889|gb|ABI82076.1| recombination protein RecA [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134050552|gb|ABO47623.1| Recombinase A [Francisella tularensis subsp. tularensis WY96-3418]
 gi|134252697|gb|EBA51791.1| recombinase A protein [Francisella tularensis subsp. holarctica
           257]
 gi|151569598|gb|EDN35252.1| recombinase A protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|156251986|gb|ABU60492.1| Recombinase A [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|157121336|gb|EDO65537.1| recombinase A protein [Francisella tularensis subsp. holarctica
           FSC022]
 gi|187713205|gb|ACD31502.1| recombinase A protein RecA [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|254841610|gb|EET20046.1| recombination protein RecA [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282160069|gb|ADA79460.1| RecA protein [Francisella tularensis subsp. tularensis NE061598]
          Length = 359

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 219/347 (63%), Positives = 281/347 (80%), Gaps = 3/347 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           + K KALE+ALSQI++ +GKGAIM+LG Q +    I+V+ SG + LD+ALGIGG+PKGRI
Sbjct: 1   MSKEKALESALSQIEKQFGKGAIMRLGDQEAAH-DIDVIPSGIIALDVALGIGGYPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYG ESSGKTTL L  IAQ QK GGT AFVDAEHALD  YA+ LGVD+ NL++SQPDT
Sbjct: 60  IEIYGHESSGKTTLTLLAIAQCQKQGGTAAFVDAEHALDPKYAKLLGVDVDNLIVSQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSG VDI+VIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT++
Sbjct: 120 GEQALEIADMLVRSGGVDIVVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTAN 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I RS  +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRL++++ GSIKD   ++GN+
Sbjct: 180 IKRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLEVKKGGSIKDGIDVSGNE 239

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PFKQ +F+++YGEGIS   ELIDLG K +I++KSGAW+S+KG+++GQG
Sbjct: 240 IKVKVVKNKVAPPFKQADFELIYGEGISLEAELIDLGAKYNIIEKSGAWYSYKGKKIGQG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           +E SK +L+EN    + IE  + +   L+ +    + + ++  +  K
Sbjct: 300 KEKSKEYLKENTAERDEIERAILEL--LLPNKYSNKDSNDSPKEGSK 344


>gi|225027004|ref|ZP_03716196.1| hypothetical protein EUBHAL_01260 [Eubacterium hallii DSM 3353]
 gi|224955689|gb|EEG36898.1| hypothetical protein EUBHAL_01260 [Eubacterium hallii DSM 3353]
          Length = 381

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 197/338 (58%), Positives = 261/338 (77%), Gaps = 1/338 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ YGKG+IM+LG  G+    IE + +GS+ LD+ALG+GG P+GRI+EIYGPESSGKTT
Sbjct: 35  IEKNYGKGSIMKLGDSGANI-DIEAIPTGSISLDVALGVGGVPRGRIIEIYGPESSGKTT 93

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA++QK  G   F+DAEHALD  YA+K+GVD+ NL ISQPD GEQALEI + ++R
Sbjct: 94  VALHMIAEAQKRNGIAGFIDAEHALDPQYAKKIGVDIDNLYISQPDNGEQALEIAETMIR 153

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGA+DI+++DSVAAL P+AEIEGDM +   G+ ARLMS+A+RKLT  I+RS C +VFINQ
Sbjct: 154 SGALDIVIVDSVAALVPKAEIEGDMDDQQVGLHARLMSKAMRKLTGVINRSNCAVVFINQ 213

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +R K+G+MFG+PE TTGG ALKFYSSVR+D+RRV +IK    I GN T+VKVVKNK+A P
Sbjct: 214 LREKVGIMFGNPEVTTGGRALKFYSSVRMDVRRVEAIKQGGEIIGNHTKVKVVKNKVAPP 273

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FK+ EFDIM+G+GIS  G+LIDL VK   V KSGAW+++KG+++GQGREN+K FLRE+ E
Sbjct: 274 FKEAEFDIMFGQGISREGDLIDLAVKVDAVQKSGAWYAYKGEKIGQGRENAKTFLREHPE 333

Query: 323 IAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           I   +E  +R+   L  D++++  +         D+ +
Sbjct: 334 IMAEVEVQVREYYNLPTDTVVESASQEEGQPKAGDNQN 371


>gi|149394994|gb|ABR27351.1| RecA [Burkholderia cenocepacia]
          Length = 308

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 216/306 (70%), Positives = 266/306 (86%), Gaps = 1/306 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 4   GSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 62

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 63  ELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 122

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 123 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 182

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 183 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 242

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 243 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 302

Query: 330 LLRQNA 335
            +R++ 
Sbjct: 303 RIRESL 308


>gi|206900229|ref|YP_002250884.1| protein RecA [Dictyoglomus thermophilum H-6-12]
 gi|206739332|gb|ACI18390.1| protein RecA [Dictyoglomus thermophilum H-6-12]
          Length = 351

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 198/345 (57%), Positives = 268/345 (77%), Gaps = 2/345 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           ++K KALE+A+ QI++ +GKGAIM+LGSQ      + V+ +G L LD ALG+GG P+GRI
Sbjct: 1   MEKEKALESAIFQIEKQFGKGAIMRLGSQERF--QVPVIPTGILTLDYALGVGGVPRGRI 58

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +E++GPE SGKTT+AL  IA +QK GG  AF+DAEHA D  YARK+GV+L+NLLISQPDT
Sbjct: 59  IELFGPEGSGKTTVALQIIASAQKMGGVAAFIDAEHAFDPNYARKIGVNLENLLISQPDT 118

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI ++LVRSG VD+IVIDSVAAL PRAE+EG+MG++  G+QARLMSQALRKLT  
Sbjct: 119 GEQALEIAEILVRSGGVDVIVIDSVAALVPRAELEGEMGDAFIGLQARLMSQALRKLTGV 178

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS+SK + +FINQ+R K+GV FG+PETT GG ALKFY+SVR+D+R+  S+K+   +TG +
Sbjct: 179 ISKSKTVAIFINQLREKVGVFFGNPETTPGGRALKFYASVRIDVRKAESMKEGSEVTGTK 238

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PFK+ EF+++YGEGIS  G ++D GV+A ++++SG W+ +K  RLGQG
Sbjct: 239 VKVKVVKNKVAPPFKEGEFELIYGEGISREGCILDAGVEAKVIERSGTWYIYKDIRLGQG 298

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           REN+K++L+E+ EIA+ IE  +R+  G    ++          + 
Sbjct: 299 RENAKLYLKEHPEIADEIEREIRKIWGFEEITVENNNVKEEPKEE 343


>gi|142092|gb|AAA22031.1| DNA-repair protein (recA) [Anabaena variabilis]
          Length = 358

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 194/324 (59%), Positives = 248/324 (76%), Gaps = 3/324 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL   L+QI+R +GKGAIM+LG    +   +E +S+G+L LD+ALG GG P+GR++E
Sbjct: 10  KQKALTMVLNQIERSFGKGAIMRLGDATRMR--VETISTGALTLDLALG-GGLPRGRVIE 66

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH IA+ QK GG  AFVDAE ALD  YA  LGVD++NLL+SQPDTGE
Sbjct: 67  IYGPESSGKTTVALHAIAEVQKEGGIAAFVDAEQALDPTYASALGVDIQNLLVSQPDTGE 126

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
            ALEI D LV S AVDI+VIDSVAAL PRAEIEGDMG++  G+QARLMSQALRK+T +I 
Sbjct: 127 SALEIVDQLVPSAAVDIVVIDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKITGNIG 186

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S C ++FINQ+R KIGV +GSPETTTGGNALKFY+SVRLDIRR+ ++K      GN+ +
Sbjct: 187 KSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGTDEFGNRVK 246

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV KNK+A PF+  EFDI++G+G+S  G L+DL  +  I+ + GAW+S+ G  + QGR+
Sbjct: 247 VKVAKNKVAPPFRIAEFDIIFGKGVSTLGCLVDLAEETGILLRKGAWYSYNGDNISQGRD 306

Query: 312 NSKIFLRENIEIAENIESLLRQNA 335
           N+  +L E  E AE I+  +R+  
Sbjct: 307 NAIKYLEEKPEFAEQIKQQVREKL 330


>gi|296803058|gb|ADH51605.1| DNA recombinase [Burkholderia cenocepacia]
 gi|296803106|gb|ADH51629.1| DNA recombinase [Burkholderia cenocepacia]
          Length = 304

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 216/305 (70%), Positives = 266/305 (87%), Gaps = 1/305 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQN 334
            +R++
Sbjct: 300 RIRES 304


>gi|71909761|ref|YP_287348.1| recombinase A [Dechloromonas aromatica RCB]
 gi|123746668|sp|Q477V3|RECA_DECAR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|71849382|gb|AAZ48878.1| RecA bacterial DNA recombination protein [Dechloromonas aromatica
           RCB]
          Length = 343

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 208/313 (66%), Positives = 271/313 (86%), Gaps = 1/313 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G    I EGI+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 16  IEKQFGKGSIMKMGD-AEIDEGIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 74

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +A+ QK GG  AF+DAEHALD  YA+KLGV++ +LLISQPDTGEQALEI DMLVR
Sbjct: 75  LCLQVVAEMQKLGGVAAFIDAEHALDPQYAQKLGVNVGDLLISQPDTGEQALEIADMLVR 134

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG+VDIIV+DSVAALTPRAEIEG+MG+ + G+ ARLMSQALRKLT++I ++  +++FINQ
Sbjct: 135 SGSVDIIVVDSVAALTPRAEIEGEMGDQMVGLHARLMSQALRKLTANIKKTNTLVIFINQ 194

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IK  D + G++T+VKVVKNK+A P
Sbjct: 195 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKKGDEVIGSETKVKVVKNKVAPP 254

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F++  FDI+YGEGIS  GE++++GV   +VDKSGAW+++KG+++GQG++N++ FL+ N E
Sbjct: 255 FREAIFDILYGEGISRQGEIVEMGVAHKLVDKSGAWYAYKGEKIGQGKDNAREFLKANPE 314

Query: 323 IAENIESLLRQNA 335
           IA+ IE+ +R+ A
Sbjct: 315 IAQEIEAGIREAA 327


>gi|254457227|ref|ZP_05070655.1| protein RecA [Campylobacterales bacterium GD 1]
 gi|207086019|gb|EDZ63303.1| protein RecA [Campylobacterales bacterium GD 1]
          Length = 345

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 202/345 (58%), Positives = 267/345 (77%), Gaps = 3/345 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K K+L+ A+ QI + +GKGA+M+LG +    E I+ +S+GSLGLD+ALGIGG P+GR+
Sbjct: 3   ANKQKSLDLAMKQIDKAFGKGALMRLGDKD--IEPIKSISTGSLGLDLALGIGGVPQGRV 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL   A+ QK GG CAF+DAEHALD +YA+ LGVD++NLL+SQPD 
Sbjct: 61  VEIYGPESSGKTTLALQITAECQKNGGVCAFIDAEHALDVVYAKNLGVDVENLLVSQPDY 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQAL+I + + RSGA+D+IVIDSVAALTP++EIEG+M +   G+QARLMS+ALRKLT  
Sbjct: 121 GEQALDIVETIARSGAIDLIVIDSVAALTPKSEIEGEMSDQNVGVQARLMSKALRKLTGV 180

Query: 190 ISRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           IS+  C ++FINQ+RMKI  + +GSPETTTGGNALKFY+SVR+D+RR+ S+K  +S  GN
Sbjct: 181 ISKMNCTVIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDVRRIASLKQGESQIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + + KV+KNK+A PF+Q EFDIM+GEGIS  GEL+D GVK  I+DKSGAWFS++  +LGQ
Sbjct: 241 RVKAKVIKNKVAPPFRQAEFDIMFGEGISKEGELVDYGVKLDIIDKSGAWFSYEETKLGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           GREN K   ++  E+A  IE  ++   G+    ++    I   D+
Sbjct: 301 GRENVKAKFKDEPELAREIEEKIKVAMGVSNVMIMDTTDIEDLDE 345


>gi|159029342|emb|CAO90208.1| recA [Microcystis aeruginosa PCC 7806]
          Length = 355

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 193/336 (57%), Positives = 252/336 (75%), Gaps = 4/336 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  D+ KAL   L+QI+R +GKG+IM+LG    +   +E V SG+L LD+ALG GG PKG
Sbjct: 6   NNSDRDKALGLVLNQIERNFGKGSIMRLGDATRMR--VETVPSGALTLDMALG-GGLPKG 62

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTLALH IA+ QK GG  AFVDAEHALD  Y+  LGVD+ NLL++QP
Sbjct: 63  RIVEIYGPESSGKTTLALHAIAEVQKAGGVAAFVDAEHALDPTYSEDLGVDINNLLVAQP 122

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGE ALEI D LVRS AVDI+VIDSVAAL PRAEIEG+MG++  G+QARLMS+ALRK+ 
Sbjct: 123 DTGEAALEIVDQLVRSSAVDIVVIDSVAALVPRAEIEGEMGDNQVGLQARLMSKALRKIA 182

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-IT 246
            +I +S C+++F+NQ+R KIGV +G+PE TTGG ALKFY+SVRLDIRR+ ++K       
Sbjct: 183 GNIGKSGCVVIFLNQLRQKIGVTYGNPEVTTGGTALKFYASVRLDIRRIQTLKKGTEGEY 242

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G + +VKV KNK+A PF+  EFDI++G+GIS  G ++D+  + ++V + GAW+S+ G+ +
Sbjct: 243 GIRAKVKVAKNKVAPPFRIAEFDIIFGKGISQVGCMLDIAEQTNVVTRKGAWYSYNGENI 302

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSL 342
            QGR+N+  +L E  E+A  IE LLR    + +  L
Sbjct: 303 AQGRDNAVKYLEERPEVAAEIEKLLRDKLDMGSVPL 338


>gi|126657745|ref|ZP_01728899.1| recombinase A [Cyanothece sp. CCY0110]
 gi|126620962|gb|EAZ91677.1| recombinase A [Cyanothece sp. CCY0110]
          Length = 347

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 196/349 (56%), Positives = 259/349 (74%), Gaps = 8/349 (2%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  DK KAL   L+QI+R +GKG+IM+LG    +   +E +S+G+L LD+ALG GG P G
Sbjct: 6   NNPDKEKALGLVLNQIERNFGKGSIMRLGDAARM--KVETISTGALTLDLALG-GGLPMG 62

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R+VEIYGPESSGKTTLALH IA+ QK GG  AFVDAEHALD  Y+  LGVD+ NLL++QP
Sbjct: 63  RVVEIYGPESSGKTTLALHAIAEVQKAGGVAAFVDAEHALDPTYSAALGVDINNLLVAQP 122

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGE ALEI D LVRS AVD++VIDSVAAL PRAEIEG+MG++  G+QARLMS+ALRK+ 
Sbjct: 123 DTGESALEIVDQLVRSAAVDVVVIDSVAALVPRAEIEGEMGDTQVGLQARLMSKALRKIA 182

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-IT 246
            +I +S C+++F+NQ+R KIGV +GSPE TTGG ALKFY+SVRLDIRR+ ++K       
Sbjct: 183 GNIGKSGCVVIFLNQLRQKIGVTYGSPEVTTGGTALKFYASVRLDIRRIQTLKKGSEGEY 242

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G + +VKV KNK+A PF+  EFDI++G+GIS  G ++DL  ++ +V + GAW+S+ G  +
Sbjct: 243 GIRAKVKVAKNKVAPPFRIAEFDIIFGQGISQMGCMLDLAEQSDVVLRKGAWYSYNGDNI 302

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            QGR+N+  +L EN +IAE IE  +R+   L + S     AI+  D+ +
Sbjct: 303 SQGRDNAVKYLEENPKIAETIEQQVREKLELGSLSF----AISQGDEEE 347


>gi|218441026|ref|YP_002379355.1| recombinase A [Cyanothece sp. PCC 7424]
 gi|226737753|sp|B7KLB5|RECA_CYAP7 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|218173754|gb|ACK72487.1| recA protein [Cyanothece sp. PCC 7424]
          Length = 356

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 188/333 (56%), Positives = 251/333 (75%), Gaps = 4/333 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  DK KAL   L+QI+R +GKG+IM+LG    +   +E + SG+L LD+ALG GG PKG
Sbjct: 6   NNPDKEKALNLVLNQIERSFGKGSIMRLGDAARMR--VETIPSGALTLDLALG-GGLPKG 62

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R++EIYGPESSGKTTLALH IA+ QK GG  AFVDAEHALD  Y+  LGVD+ NLL++QP
Sbjct: 63  RVIEIYGPESSGKTTLALHAIAEVQKAGGVAAFVDAEHALDPTYSEVLGVDIHNLLVAQP 122

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGE ALEI D LVRS AVDI+V+DSVAAL PRAEIEG+MG++  G+QARLMS+ALRK+ 
Sbjct: 123 DTGESALEIVDQLVRSAAVDIVVVDSVAALVPRAEIEGEMGDNQVGLQARLMSKALRKIA 182

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-IT 246
            +I +S C+++F+NQ+R KIGV +GSPE TTGG ALKFY+SVRLDIRR+ ++K       
Sbjct: 183 GNIGKSGCVVIFLNQLRQKIGVTYGSPEVTTGGTALKFYASVRLDIRRIQTLKKGSEGEY 242

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G + +VKV KNK+A PF+  EFDI++G+GIS  G +ID+     ++ + GAW+S+ G+ +
Sbjct: 243 GIRAKVKVAKNKVAPPFRIAEFDIIFGKGISQMGCMIDMAEHTDVITRKGAWYSYNGENI 302

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
            QGR+N+  +L EN+++A  IE  +R+   + +
Sbjct: 303 AQGRDNAVKYLEENLDVAAIIEKQVREKLDIAS 335


>gi|308212814|gb|ADO21635.1| RecA [Burkholderia arboris]
          Length = 304

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 216/305 (70%), Positives = 266/305 (87%), Gaps = 1/305 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQN 334
            +R++
Sbjct: 300 RIRES 304


>gi|126662800|ref|ZP_01733799.1| recombinase A [Flavobacteria bacterium BAL38]
 gi|126626179|gb|EAZ96868.1| recombinase A [Flavobacteria bacterium BAL38]
          Length = 334

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 201/333 (60%), Positives = 260/333 (78%), Gaps = 6/333 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   KE     K KAL+  L ++ + YGKG +M+LG   S  E IE + SGSLG+D+ALG
Sbjct: 1   MSADKEA----KLKALQLTLDKLDKTYGKGTVMKLGD--SAVEEIEAIPSGSLGIDLALG 54

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           + G+P+GR++EIYGPESSGKTTL LH IA++QK GG  AF+DAEHA D  YA KLG+D+ 
Sbjct: 55  VNGYPRGRVIEIYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAEHAFDRFYAEKLGIDID 114

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL+ISQPD GEQALEI + L+RSGAVDI+VIDSVAALTP++EIEGDMG+S  G+ ARLMS
Sbjct: 115 NLIISQPDNGEQALEIAESLIRSGAVDIVVIDSVAALTPKSEIEGDMGDSKMGLHARLMS 174

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT +I ++ C + FINQ+R KIGVMFGSPETTTGGNALKFY+SVR+DIR+   IK
Sbjct: 175 QALRKLTGTIHKTNCTVFFINQLRDKIGVMFGSPETTTGGNALKFYASVRIDIRKSTQIK 234

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D D++ GN+T+VK+VKNK+A PF+  EFDIMYGEGIS  GE++DL V+  ++ KSG+WFS
Sbjct: 235 DGDNVLGNRTKVKIVKNKVAPPFRTAEFDIMYGEGISKVGEVLDLAVEFEVIKKSGSWFS 294

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           +   +LGQGR+  K  +++N E+ + +E  ++ 
Sbjct: 295 YGETKLGQGRDAVKALIKDNPELMDELEQKIKD 327


>gi|186683193|ref|YP_001866389.1| recombinase A [Nostoc punctiforme PCC 73102]
 gi|238691204|sp|B2IWJ2|RECA_NOSP7 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|186465645|gb|ACC81446.1| recA protein [Nostoc punctiforme PCC 73102]
          Length = 359

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 198/324 (61%), Positives = 250/324 (77%), Gaps = 3/324 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL   L+QI+R +GKGAIM+LG    +   +E +SSG+L LD+ALG GG PKGR++E
Sbjct: 10  KQKALTMVLNQIERSFGKGAIMRLGDATRMR--VETISSGALTLDLALG-GGLPKGRVIE 66

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH +A+ Q+ GG  AFVDAEHALD  YA  LGVD+ NLLISQPDTGE
Sbjct: 67  IYGPESSGKTTVALHALAEVQRNGGIAAFVDAEHALDPTYAAALGVDIDNLLISQPDTGE 126

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
            ALEI D LVRS AVDI+VIDSVAAL PRAEIEGDMG++  G+QARLMSQALRK+T +I 
Sbjct: 127 SALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKITGNIG 186

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S C ++FINQ+R KIGV +GSPETTTGGNALKFY+SVRLDIRR+ ++K      GN+ +
Sbjct: 187 KSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGTDEYGNRVK 246

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV KNK+A PF+  EFDI++G+GIS  G ++DL  +  I+ + GAW+S+ G  + QGR+
Sbjct: 247 VKVAKNKVAPPFRIAEFDIIFGKGISTLGCVVDLAEETGIIIRKGAWYSYNGDNISQGRD 306

Query: 312 NSKIFLRENIEIAENIESLLRQNA 335
           N+  +L E  E AE I+ L+R+  
Sbjct: 307 NAIKYLEEKPEFAEEIKKLVREKL 330


>gi|166364348|ref|YP_001656621.1| recombinase A [Microcystis aeruginosa NIES-843]
 gi|166086721|dbj|BAG01429.1| double-stranded DNA binding protein [Microcystis aeruginosa
           NIES-843]
          Length = 355

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 192/333 (57%), Positives = 251/333 (75%), Gaps = 4/333 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  D+ KAL   L+QI+R +GKG+IM+LG    +   +E V SG+L LD+ALG GG PKG
Sbjct: 6   NNSDRDKALGLVLNQIERNFGKGSIMRLGDATRMR--VETVPSGALTLDMALG-GGLPKG 62

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTLALH IA+ QK GG  AFVDAEHALD  Y+  LGVD+ NLL++QP
Sbjct: 63  RIVEIYGPESSGKTTLALHAIAEVQKAGGVAAFVDAEHALDPTYSEDLGVDINNLLVAQP 122

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGE ALEI D LVRS AVDI+VIDSVAAL PRAEIEG+MG++  G+QARLMS+ALRK+ 
Sbjct: 123 DTGEAALEIVDQLVRSSAVDIVVIDSVAALVPRAEIEGEMGDNQVGLQARLMSKALRKIA 182

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-IT 246
            +I +S C+++F+NQ+R KIGV +G+PE TTGG ALKFY+SVRLDIRR+ ++K       
Sbjct: 183 GNIGKSGCVVIFLNQLRQKIGVTYGNPEVTTGGTALKFYASVRLDIRRIQTLKKGTEGEY 242

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G + +VKV KNK+A PF+  EFDI++G+GIS  G ++D+  + ++V + GAW+S+ G+ +
Sbjct: 243 GIRAKVKVAKNKVAPPFRIAEFDIIFGKGISQVGCMLDIAEQTNVVTRKGAWYSYNGENI 302

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
            QGR+N+  +L E  E+A  IE LLR    + +
Sbjct: 303 AQGRDNAVKYLEERPEVAAEIEKLLRDKLDMGS 335


>gi|213619197|ref|ZP_03373023.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
          Length = 322

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 201/308 (65%), Positives = 260/308 (84%), Gaps = 2/308 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L
Sbjct: 3   NFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTL 60

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTGEQALEI D L RSGA
Sbjct: 61  QVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 120

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           VD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RM
Sbjct: 121 VDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 180

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++TRVKVVKNK+A+PFKQ
Sbjct: 181 KIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSETRVKVVKNKIAAPFKQ 240

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
            EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+ N+  +L+EN   A+
Sbjct: 241 AEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATTWLKENPATAK 300

Query: 326 NIESLLRQ 333
            IE  +R+
Sbjct: 301 EIEKRVRE 308


>gi|149394988|gb|ABR27348.1| RecA [Burkholderia cenocepacia]
          Length = 305

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 216/306 (70%), Positives = 266/306 (86%), Gaps = 1/306 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQNA 335
            +R++ 
Sbjct: 300 RIRESL 305


>gi|296274479|ref|YP_003657110.1| recombination protein RecA [Arcobacter nitrofigilis DSM 7299]
 gi|296098653|gb|ADG94603.1| recA protein [Arcobacter nitrofigilis DSM 7299]
          Length = 346

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 207/346 (59%), Positives = 275/346 (79%), Gaps = 4/346 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ K+LE A+ QI + +GKG++++LG + ++   +E +S+GSLGLD+ALG+GG PKGR++
Sbjct: 4   NQKKSLELAIKQIDKAFGKGSLVRLGDKETV--PVESISTGSLGLDLALGVGGLPKGRVI 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ Q+ GG CAF+DAEHALD IYA+ LGVD  NLL+SQPD G
Sbjct: 62  EIYGPESSGKTTLTLHAIAECQRQGGVCAFIDAEHALDVIYAKNLGVDTDNLLVSQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + ++RSGAVD+IVIDSVAALTP+ EI+GDM +   G+QARLMS+ALRK+T  +
Sbjct: 122 EQALEILETVIRSGAVDLIVIDSVAALTPKVEIDGDMDDQQVGVQARLMSKALRKITGIL 181

Query: 191 SRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +  C ++FINQ+RMKI    +GSPETTTGGNALKFYSS+RLDIRR+ ++K  ++  GN+
Sbjct: 182 HKMNCTVIFINQIRMKIGMTGYGSPETTTGGNALKFYSSIRLDIRRIATLKQAENSIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PFKQ EFDIM+GEGIS  GEL+D GVK  IVDK+GAWFS+   ++GQG
Sbjct: 242 VKVKVVKNKVAPPFKQAEFDIMFGEGISKMGELVDYGVKLDIVDKAGAWFSYNDSKIGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           +ENSK+FLREN EIA+ IE  + +  G V D++  +   ++++  D
Sbjct: 302 KENSKVFLRENPEIAKEIEDKILEAMG-VNDAVPFDGDESSEEGED 346


>gi|91202500|emb|CAJ72139.1| strongly similar to RecA protein (recombinase A) [Candidatus
           Kuenenia stuttgartiensis]
          Length = 364

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 198/358 (55%), Positives = 275/358 (76%), Gaps = 6/358 (1%)

Query: 1   MDYRKEMNIVDK-SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIAL 59
           M    E+   +K  +ALE A+S I + +GKG IM+LG    +   + V+S+G+L LD+AL
Sbjct: 1   MTTNTEIPDKEKRQQALERAISHIDKQFGKGTIMKLGGDTKL--DVPVISTGALSLDVAL 58

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           G+GG P+GR++EI+G ESSGKTTL L  IA +Q+ GG  AF+DAEHALDS YA++LGV+L
Sbjct: 59  GVGGIPRGRVIEIFGQESSGKTTLTLQIIANAQRGGGVAAFIDAEHALDSEYAKRLGVNL 118

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
            +L+++QPDTGEQALEI ++LVRS AVD+IVIDSVAAL PRAEIEG+MG++  G+QARLM
Sbjct: 119 NDLMVNQPDTGEQALEIAELLVRSNAVDVIVIDSVAALVPRAEIEGEMGDTHIGLQARLM 178

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMF-GSPETTTGGNALKFYSSVRLDIRRVGS 238
           SQALRKLT+ IS+S+  ++FINQ+R KIGVM+ G+PETT GG ALKFY+SVR+DIRR+GS
Sbjct: 179 SQALRKLTACISKSRTSVIFINQIREKIGVMYGGNPETTPGGRALKFYASVRIDIRRIGS 238

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IKD D+I G++ R  + KNK+A+PFK+ EFDI+Y  GIS  G+++DLG + +I++KSG W
Sbjct: 239 IKDGDAIIGSRVRATIAKNKVAAPFKRAEFDILYNTGISRAGDILDLGAEHNIIEKSGTW 298

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           +S++  RLGQGRENS+ FL E+ E+ + IE  + +   ++  +  Q+P  +  +  +K
Sbjct: 299 YSYRETRLGQGRENSRQFLTEHPEMMKEIEQSILKI--VLPSAASQKPPDSPPESTEK 354


>gi|83816684|ref|YP_445653.1| recA protein [Salinibacter ruber DSM 13855]
 gi|294507545|ref|YP_003571603.1| RecA protein [Salinibacter ruber M8]
 gi|83758078|gb|ABC46191.1| recA protein [Salinibacter ruber DSM 13855]
 gi|294343873|emb|CBH24651.1| RecA protein [Salinibacter ruber M8]
          Length = 353

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 208/328 (63%), Positives = 262/328 (79%), Gaps = 2/328 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+ A+ QIQR +G+GAIM+L    +  + +E + +GSL LD ALGIGG P+GRI E
Sbjct: 9   KEKALDLAVEQIQRDHGEGAIMRLSDDPN--QEVEAIPTGSLALDDALGIGGVPRGRITE 66

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPESSGKTTLA H +A++QK GGTCAFVDAEHA D  YA +LGVD   LLISQPDTGE
Sbjct: 67  IFGPESSGKTTLAAHVVAEAQKLGGTCAFVDAEHAFDPNYAEQLGVDTDELLISQPDTGE 126

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL ITD LVRSGA+D+IVIDSV+AL P+AE+EGDMG++  G+QARLMSQALRKL  +I+
Sbjct: 127 QALNITDTLVRSGALDVIVIDSVSALVPQAELEGDMGDTHVGLQARLMSQALRKLAGTIN 186

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           R+K  L+FINQ+RMKIGVMFG+PETT+GG ALKFYSSVR+DIRR+G++KD   + GN+TR
Sbjct: 187 RTKTALIFINQIRMKIGVMFGNPETTSGGRALKFYSSVRMDIRRIGAVKDGQDVVGNRTR 246

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV KNK+A PFK+ EFD++YGEGIS  GE+IDLG +  I+ K G+W+S++ + + QGRE
Sbjct: 247 VKVKKNKVAPPFKEAEFDLIYGEGISSLGEIIDLGTEYDILQKRGSWYSYQDETIAQGRE 306

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVA 339
           N+K +L EN E  + I+S LR   GL  
Sbjct: 307 NTKEWLEENDEQRDEIKSALRGEIGLAT 334


>gi|149394990|gb|ABR27349.1| RecA [Burkholderia cenocepacia]
          Length = 311

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 216/306 (70%), Positives = 266/306 (86%), Gaps = 1/306 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 7   GSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 65

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 66  ELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 125

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 126 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 185

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 186 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 245

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 246 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 305

Query: 330 LLRQNA 335
            +R++ 
Sbjct: 306 RIRESL 311


>gi|47571288|gb|AAT35801.1| RecA [Mycobacterium gastri]
 gi|47571290|gb|AAT35802.1| RecA [Mycobacterium kansasii ATCC 12478]
          Length = 304

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 194/302 (64%), Positives = 252/302 (83%), Gaps = 2/302 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 5   PDREKALELAMAQIEKSYGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 63  VEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T +
Sbjct: 123 GEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+
Sbjct: 183 LNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVK+VKNK++ PFKQ EFDI+YG+GIS  G LID+GV    + KSGAWF+++G++LGQG
Sbjct: 243 TRVKIVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVDQGFIRKSGAWFTYEGEQLGQG 302

Query: 310 RE 311
           +E
Sbjct: 303 KE 304


>gi|157326947|gb|ABV44586.1| RecA [Burkholderia multivorans]
          Length = 301

 Score =  347 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 214/301 (71%), Positives = 264/301 (87%), Gaps = 1/301 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FL EN EI
Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLAENPEI 299

Query: 324 A 324
           A
Sbjct: 300 A 300


>gi|75911121|ref|YP_325417.1| recombinase A [Anabaena variabilis ATCC 29413]
 gi|92090633|sp|P14167|RECA_ANAVT RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|75704846|gb|ABA24522.1| RecA protein [Anabaena variabilis ATCC 29413]
          Length = 358

 Score =  347 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 197/324 (60%), Positives = 250/324 (77%), Gaps = 3/324 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL   L+QI+R +GKGAIM+LG    +   +E +S+G+L LD+ALG GG PKGR++E
Sbjct: 10  KQKALTMVLNQIERSFGKGAIMRLGDATRMR--VETISTGALTLDLALG-GGLPKGRVIE 66

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH IA+ QK GG  AFVDAEHALD  YA  LGVD++NLL+SQPDTGE
Sbjct: 67  IYGPESSGKTTVALHAIAEVQKEGGIAAFVDAEHALDPTYASALGVDIQNLLVSQPDTGE 126

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
            ALEI D LVRS AVDI+VIDSVAAL PRAEIEGDMG++  G+QARLMSQALRK+T +I 
Sbjct: 127 SALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKITGNIG 186

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S C ++FINQ+R KIGV +GSPETTTGGNALKFY+SVRLDIRR+ ++K      GN+ +
Sbjct: 187 KSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGTDEFGNRVK 246

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV KNK+A PF+  EFDI++G+G+S  G L+DL  +  I+ + GAW+S+ G  + QGR+
Sbjct: 247 VKVAKNKVAPPFRIAEFDIIFGKGVSTLGCLVDLAEETGILLRKGAWYSYNGDNISQGRD 306

Query: 312 NSKIFLRENIEIAENIESLLRQNA 335
           N+  +L E  E AE I+  +R+  
Sbjct: 307 NAIKYLEEKPEFAEQIKQQVREKL 330


>gi|68171907|ref|ZP_00545229.1| RecA bacterial DNA recombination protein [Ehrlichia chaffeensis
           str. Sapulpa]
 gi|88658117|ref|YP_507893.1| recombinase A [Ehrlichia chaffeensis str. Arkansas]
 gi|123750042|sp|Q2GF90|RECA_EHRCR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|67998670|gb|EAM85400.1| RecA bacterial DNA recombination protein [Ehrlichia chaffeensis
           str. Sapulpa]
 gi|88599574|gb|ABD45043.1| recA protein [Ehrlichia chaffeensis str. Arkansas]
          Length = 357

 Score =  347 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 218/332 (65%), Positives = 279/332 (84%), Gaps = 3/332 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   K +N  ++ KAL++A+SQI++ +G+GAIM+L  +    E I+ +S+GS+ LD ALG
Sbjct: 1   MSDSKNLN-QERQKALDSAISQIEKAFGRGAIMKL--KQGAIEKIDSISTGSIALDTALG 57

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGGFPKGRIVEI+GPESSGKTTLALH IA+SQK GG CAF+DAEHALD +YARKLGV+  
Sbjct: 58  IGGFPKGRIVEIFGPESSGKTTLALHVIAESQKKGGNCAFIDAEHALDIMYARKLGVNTG 117

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +L++SQPDTGEQAL I + LV SGA+D+IV+DSVAALTPRAEIEGDMG+   G+QARL+S
Sbjct: 118 DLIVSQPDTGEQALHIVEYLVCSGAIDVIVVDSVAALTPRAEIEGDMGDQHMGLQARLLS 177

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
            ALRKLTS +S++ C+L+FINQ+RMKIGV++G+PETTTGGNALKFYSSVRLDIR+V +IK
Sbjct: 178 HALRKLTSIVSKANCVLIFINQIRMKIGVVYGNPETTTGGNALKFYSSVRLDIRKVSAIK 237

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           DKD I GNQT+VKVVKNK+A PFKQV+FDIMY EGIS  GE+ID+GVK +I++K+G+++S
Sbjct: 238 DKDVIIGNQTKVKVVKNKVAPPFKQVDFDIMYNEGISKVGEIIDMGVKLNIIEKAGSYYS 297

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           +   RLGQG+EN+K +L+ N + A  IE  +R
Sbjct: 298 YNSVRLGQGKENAKSYLKANCDTAHEIEQKIR 329


>gi|634052|emb|CAA84615.1| RecA [Helicobacter pylori]
          Length = 347

 Score =  347 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 201/343 (58%), Positives = 269/343 (78%), Gaps = 4/343 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+  A+ QI +V+GKGA+++LG +    E I+ +S+GSLGLD+ALGIGG PKGRI+
Sbjct: 6   DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDAISTGSLGLDLALGIGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTQNLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  +
Sbjct: 124 EQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183

Query: 191 SRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    L+FINQ+RMKI  + +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+
Sbjct: 184 HKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIATLKQNEQHIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF++ EFDIM+GEGIS  GE+ID GVK  IVDKSGAW S++ ++LGQG
Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           REN+K  L+E+  +A+ I   ++++ G   + ++  P    ++
Sbjct: 304 RENAKALLKEDKALADEITLKIKESIG-SNEEIMPLPDEPLEE 345


>gi|296803120|gb|ADH51636.1| DNA recombinase [Burkholderia contaminans]
          Length = 300

 Score =  347 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 213/301 (70%), Positives = 265/301 (88%), Gaps = 1/301 (0%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           L+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSG
Sbjct: 1   LAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSG 59

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEIT+ 
Sbjct: 60  KTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITNA 119

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           L+RSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++F
Sbjct: 120 LLRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIF 179

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           INQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK+
Sbjct: 180 INQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKV 239

Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
           + PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLRE
Sbjct: 240 SPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRE 299

Query: 320 N 320
           N
Sbjct: 300 N 300


>gi|149394980|gb|ABR27344.1| RecA [Burkholderia cenocepacia]
          Length = 305

 Score =  347 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 216/306 (70%), Positives = 266/306 (86%), Gaps = 1/306 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+
Sbjct: 1   SIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IV
Sbjct: 60  LQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM
Sbjct: 120 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 179

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI
Sbjct: 180 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 239

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
           +YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ 
Sbjct: 240 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 299

Query: 331 LRQNAG 336
           +R++ G
Sbjct: 300 IRESLG 305


>gi|28971929|dbj|BAC65341.1| RecA [Campylobacter lari]
          Length = 344

 Score =  347 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 210/349 (60%), Positives = 272/349 (77%), Gaps = 9/349 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+AAL  + + +GKG I++LG +    E I+ + +GS+GLD+ALGIGG PKGRI+
Sbjct: 4   NKRKSLDAALKSLDKTFGKGTILRLGDKE--VEKIDSIPTGSVGLDLALGIGGVPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD  YA+ LGVD +NL ISQPD G
Sbjct: 62  EIYGPESSGKTTLTLHIIAECQKKGGVCAFIDAEHALDVRYAKNLGVDTENLYISQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSGA+D+IV+DSVAALTP+AEIEGDMG+   G+QARLMSQALRKLT  +
Sbjct: 122 EQALEIVETIARSGAIDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRKLTGIV 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIG+M +G+PETTTGGNALKFY+SVRLD+R+  ++K  D   GN+
Sbjct: 182 HKMNTTVIFINQIRMKIGMMGYGTPETTTGGNALKFYASVRLDVRKTATLKQNDEPIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKV KNK+A PFKQ EFD+M+GEG+S  GELID GVK  I+DKSGAWFS+K  +LGQG
Sbjct: 242 VKVKVAKNKVAPPFKQAEFDVMFGEGVSREGELIDYGVKLDIIDKSGAWFSYKASKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           REN+K FL+EN  IA+ I   ++ + G+  DS++    +  K+D + D+
Sbjct: 302 RENAKAFLKENPAIADEITQAIQNSIGI--DSMI----LGAKEDDEGDE 344


>gi|113953696|ref|YP_729672.1| recombinase A [Synechococcus sp. CC9311]
 gi|123327976|sp|Q0ID00|RECA_SYNS3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|113881047|gb|ABI46005.1| recA protein [Synechococcus sp. CC9311]
          Length = 382

 Score =  347 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 192/325 (59%), Positives = 253/325 (77%), Gaps = 3/325 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+  L QI+R +GKG+IM+LG    +   +E +S+G+L LD+ALG GG+PKGR+V
Sbjct: 19  ERDKALDLVLGQIERNFGKGSIMRLGDASRMR--VETISTGALTLDLALG-GGYPKGRVV 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL LH IA+ QK GG  AFVDAEHALD +YA  LGVD++NLL+SQPDTG
Sbjct: 76  EVYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D LVRS AVDI+V+DSVAALTPRAEIEG+MG+   G QARLMSQA+RK+T +I
Sbjct: 136 EMALEIVDQLVRSAAVDIVVVDSVAALTPRAEIEGEMGDLAVGAQARLMSQAMRKITGNI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K      G + 
Sbjct: 196 GKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRA 255

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV KNK+A PF+  EFDI++G GIS  G ++DL  +  +V + GAW+S++G  +GQGR
Sbjct: 256 KVKVAKNKVAPPFRIAEFDILFGRGISTLGCVLDLAEETGVVTRKGAWYSYEGDNIGQGR 315

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
           +N+  +L +N E  + IE L+RQ  
Sbjct: 316 DNTIGWLEQNPEAKDAIEVLVRQKL 340


>gi|291543504|emb|CBL16613.1| RecA protein [Ruminococcus sp. 18P13]
          Length = 411

 Score =  347 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 196/361 (54%), Positives = 272/361 (75%), Gaps = 5/361 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K     +K KAL +A++ I+++YG GA+M+LG   ++   ++ + +GS+ LD+ALGIGG 
Sbjct: 16  KLTTAEEKKKALASAIAHIEKMYGAGAVMKLGQTKAL--NVDAIPTGSMTLDLALGIGGV 73

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GRIVE+YGPESSGKTT+ALH IA++QK GG  AF+D EHALD +YA KLGV++ NLL+
Sbjct: 74  PRGRIVELYGPESSGKTTVALHIIAEAQKLGGEVAFIDVEHALDPVYAEKLGVNINNLLV 133

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD+GEQALEI + LVRSGA+D+IV+DSVAA+T +AEI+GDMG++  G  ARLMSQA+R
Sbjct: 134 SQPDSGEQALEIAEALVRSGAIDVIVLDSVAAMTTKAEIDGDMGDNHVGQLARLMSQAMR 193

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLTS I++S C+ +FINQ+R KIGVM+G+PETT GG ALKFY+SVR+++R+  +IK+   
Sbjct: 194 KLTSVIAKSNCVAIFINQIREKIGVMYGNPETTPGGRALKFYASVRMEVRKAEAIKNGSQ 253

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           I GN+TRVK+VKNK+A PFK+ EFDIM+G+GIS  GE++DL V   IV K G+WFS+K Q
Sbjct: 254 IIGNRTRVKIVKNKVAPPFKECEFDIMFGQGISRVGEVLDLAVDLDIVKKGGSWFSYKDQ 313

Query: 305 RLGQGRENSKIFLRENIEIAENIESLL---RQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           +LGQGR+  K  L  + E+ + IE+ +   +    LV+    +   +    D    DT++
Sbjct: 314 KLGQGRDKVKEILANDPELMKEIEAQILEQKDKLLLVSKKSKKSADLKKAADEALADTED 373

Query: 362 V 362
           +
Sbjct: 374 I 374


>gi|33241165|ref|NP_876107.1| recombinase A [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|60393014|sp|Q7V9V8|RECA_PROMA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|33238695|gb|AAQ00760.1| RecA recombinase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 379

 Score =  347 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 193/331 (58%), Positives = 255/331 (77%), Gaps = 3/331 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
            E    ++ KAL   L QI+R +GKG+IM+LG    +   +E +S+G+L LD+ALG GG+
Sbjct: 18  NEARSGERDKALSLVLGQIERNFGKGSIMRLGDASKMR--VETISTGALTLDLALG-GGY 74

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGR+VE+YGPESSGKTTL LH IA+ QK GG  AFVDAEHALD +YA  LGVD++NLL+
Sbjct: 75  PKGRVVEVYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASLGVDIENLLV 134

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGE ALEI D L+RS AVD++V+DSVAALTPR+EIEG+MG+   G QARLMSQA+R
Sbjct: 135 SQPDTGEMALEIVDQLIRSSAVDLVVVDSVAALTPRSEIEGEMGDHAVGSQARLMSQAMR 194

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           K+T +I +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K    
Sbjct: 195 KITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTE 254

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
             G + +VKV KNK+A PF+  EFDI++G+GIS  G L+D+  + +IV + GAW+S++G 
Sbjct: 255 EYGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTLGCLLDMAEETNIVTRKGAWYSYEGD 314

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNA 335
            +GQGR+N+  +L EN E  E IE L+RQ  
Sbjct: 315 NIGQGRDNTITWLEENSEAKEKIEKLVRQKL 345


>gi|224438293|ref|ZP_03659220.1| recombinase A [Helicobacter cinaedi CCUG 18818]
 gi|313144733|ref|ZP_07806926.1| protein recA [Helicobacter cinaedi CCUG 18818]
 gi|313129764|gb|EFR47381.1| protein recA [Helicobacter cinaedi CCUG 18818]
          Length = 344

 Score =  347 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 208/347 (59%), Positives = 269/347 (77%), Gaps = 4/347 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M    K KA+E AL QI + +GKGA+++LG +    E I+ +S+GSLGLD+ALGIGG PK
Sbjct: 1   MVDERKQKAIELALKQIDKAFGKGALVRLGDKQ--VEKIDSISTGSLGLDMALGIGGVPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTTL+L  +A+ QK GG CAF+DAEHALD  YA+ LGVD +NLL+SQ
Sbjct: 59  GRIIEIYGPESSGKTTLSLQIVAECQKNGGICAFIDAEHALDVYYAKHLGVDTENLLVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI + L RSGAVD++VIDSVAALTP+AEIEGDMG+   G+QARLMS ALRK+
Sbjct: 119 PDTGEQALEILETLTRSGAVDLVVIDSVAALTPKAEIEGDMGDQHVGLQARLMSHALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           T  + +    L+FINQ+RMKIGVM +GSPETTTGGNALKFY+SVR+D+RR+ ++K  +  
Sbjct: 179 TGILHKMNTTLIFINQIRMKIGVMGYGSPETTTGGNALKFYASVRIDVRRIATLKQNEQQ 238

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+T+ KVVKNK+A PF++ EFDIM+GEGIS  GE+ID G+K  I+DKSGAW S+  ++
Sbjct: 239 IGNRTKAKVVKNKVAPPFREAEFDIMFGEGISREGEIIDYGIKLDIIDKSGAWLSYNDKK 298

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           LGQGREN+K+ L+E+  +AE I   +++  G   D ++  P     +
Sbjct: 299 LGQGRENAKLLLKEDKALAEEITLKIKEQIG-AKDEIMPLPDEPEAE 344


>gi|208434108|ref|YP_002265774.1| recombinase [Helicobacter pylori G27]
 gi|226723631|sp|B5Z9S8|RECA_HELPG RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|208432037|gb|ACI26908.1| recombinase [Helicobacter pylori G27]
          Length = 347

 Score =  347 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 202/343 (58%), Positives = 269/343 (78%), Gaps = 4/343 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+  A+ QI +V+GKGA+++LG +    E I+ +S+GSLGLD+ALGIGG PKGRI+
Sbjct: 6   DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDAISTGSLGLDLALGIGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTQNLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  +
Sbjct: 124 EQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183

Query: 191 SRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    L+FINQ+RMKI  + +GSPETTTGGNALKFY+SVR+DIRR+ S+K  +   GN+
Sbjct: 184 HKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIASLKQNEQHIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF++ EFDIM+GEGIS  GE+ID GVK  IVDKSGAW S++ ++LGQG
Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           REN+K  L+E+  +A+ I   ++++ G   + ++  P    ++
Sbjct: 304 RENAKALLKEDKALADEITLKIKESIG-SNEEIMPLPDEPLEE 345


>gi|163786978|ref|ZP_02181425.1| DNA recombination protein [Flavobacteriales bacterium ALC-1]
 gi|159876866|gb|EDP70923.1| DNA recombination protein [Flavobacteriales bacterium ALC-1]
          Length = 334

 Score =  347 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 210/334 (62%), Positives = 266/334 (79%), Gaps = 7/334 (2%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   K+     K KAL+  L ++ + YGKG +M++  Q    E ++ +SSGSLGLDIALG
Sbjct: 1   MSSEKDA----KLKALKLTLDKLDKAYGKGTVMKMSDQA--IEDVDAISSGSLGLDIALG 54

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG+P+GR++EIYGPESSGKTTL LH IA++QK GG  AF+DAEHA D  YA KLGVDL+
Sbjct: 55  VGGYPRGRVIEIYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAEHAFDRFYAEKLGVDLE 114

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL+ISQPD GEQALEI D LVRSGA+DIIVIDSVAALTP++EIEG+MG+S  G+ ARLMS
Sbjct: 115 NLIISQPDNGEQALEIADNLVRSGAIDIIVIDSVAALTPKSEIEGEMGDSKMGLHARLMS 174

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT+SIS++ C +VFINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IK
Sbjct: 175 QALRKLTASISKTNCTMVFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIK 234

Query: 241 DKD-SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           D + ++ GN+TRVKVVKNK+A PF+  EFDIMYGEGIS  GE++DL V+  IV KSG+WF
Sbjct: 235 DSNSNVMGNKTRVKVVKNKVAPPFRLAEFDIMYGEGISKVGEVLDLAVEHDIVKKSGSWF 294

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           S++  +LGQGR+  K  +++N ++ + +E  +R 
Sbjct: 295 SYQDTKLGQGRDAVKALIKDNPDLMDELEEKVRA 328


>gi|322388603|ref|ZP_08062203.1| recombination protein A [Streptococcus infantis ATCC 700779]
 gi|321140523|gb|EFX36028.1| recombination protein A [Streptococcus infantis ATCC 700779]
          Length = 382

 Score =  347 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 196/357 (54%), Positives = 269/357 (75%), Gaps = 6/357 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG GG+PKGRI
Sbjct: 18  ADREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRI 75

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+
Sbjct: 76  IEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDS 135

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +S
Sbjct: 136 GEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGAS 195

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSI 245
           I+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KD+ 
Sbjct: 196 INKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIKGTGDQKDTN 255

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAW+S+KG++
Sbjct: 256 VGKETKIKVVKNKVAPPFKEALVEIMYGEGISRTGELLKIASDLDIIQKAGAWYSYKGEK 315

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           +GQG EN+K +L ++ EI + I+  +R   GL+ +    + +     D++++ T ++
Sbjct: 316 IGQGSENAKKYLADHPEIFDEIDHQVRVQYGLIEEEEGSKASAAADADSNQEVTLDL 372


>gi|154491113|ref|ZP_02031054.1| hypothetical protein PARMER_01035 [Parabacteroides merdae ATCC
           43184]
 gi|154088533|gb|EDN87577.1| hypothetical protein PARMER_01035 [Parabacteroides merdae ATCC
           43184]
          Length = 347

 Score =  346 bits (888), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 208/334 (62%), Positives = 266/334 (79%), Gaps = 2/334 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
              K     DK KAL AA+ +I++ YGKG+IM+LG +    E IEV+ +GS+ L+ ALG+
Sbjct: 14  AAEKPAVNADKLKALRAAMDKIEKNYGKGSIMKLGDES--VENIEVIPTGSIALNAALGV 71

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+PKGR++EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD++N
Sbjct: 72  GGYPKGRVIEIYGPESSGKTTLAIHAIAEAQKNGGIAAFIDAEHAFDRFYAEKLGVDVEN 131

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L ISQPD GEQALEI + L+RS AVDIIVIDSVAALTP+AEIEGDMG+S  G+QARLMSQ
Sbjct: 132 LWISQPDNGEQALEIAEQLIRSSAVDIIVIDSVAALTPKAEIEGDMGDSKMGLQARLMSQ 191

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT++I+++    +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR +G +KD
Sbjct: 192 ALRKLTAAINKTNTTCIFINQLRDKIGVMFGNPETTTGGNALKFYASVRLDIRSIGKLKD 251

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            D I GNQ RVKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG + +I+ KSG+W+S+
Sbjct: 252 GDDIKGNQVRVKVVKNKVAPPFRKAEFDIMFGEGISKAGEIIDLGAELNIIKKSGSWYSY 311

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
              +LGQGR+ +K  + +N E+A+ +  L+ +  
Sbjct: 312 NDTKLGQGRDAAKQCVADNPELADELSDLIFEAL 345


>gi|15128571|dbj|BAB62717.1| recA [Campylobacter lari]
          Length = 345

 Score =  346 bits (888), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 208/349 (59%), Positives = 270/349 (77%), Gaps = 8/349 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+AAL  + + +GKG I++LG +    E I+ + +GS+GLD+ALGIGG PKGRI+
Sbjct: 4   NKRKSLDAALKSLDKTFGKGTILRLGDKE--VEKIDSIPTGSVGLDLALGIGGVPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD  YA+ LGVD +NL ISQPD G
Sbjct: 62  EIYGPESSGKTTLTLHIIAECQKKGGVCAFIDAEHALDVRYAKNLGVDTENLYISQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSGA+D+IV+DSVAALTP+AEIEGDMG+   G+QARLMSQALRKLT  +
Sbjct: 122 EQALEIVETIARSGAIDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRKLTGIV 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIG+M +G+PETTTGGNALKFY+SVRLD+R+  ++K  D   GN+
Sbjct: 182 HKMNTTVIFINQIRMKIGMMGYGTPETTTGGNALKFYASVRLDVRKTATLKQNDEPIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKV KNK+A PFKQ EFD+M+GEG+S  GELID GVK  I+DKSGAWFS+K  +LGQG
Sbjct: 242 VKVKVAKNKVAPPFKQAEFDVMFGEGVSREGELIDYGVKLDIIDKSGAWFSYKASKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           REN+K FL+EN  IA+ I   ++ + G+ +  L  +     +DD + ++
Sbjct: 302 RENAKAFLKENPAIADEITQAIQNSIGIDSMILGAK-----EDDEEGEE 345


>gi|296837449|gb|ADH59583.1| DNA recombinase [Burkholderia vietnamiensis]
          Length = 304

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 215/305 (70%), Positives = 266/305 (87%), Gaps = 1/305 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+
Sbjct: 1   SIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IV
Sbjct: 60  LQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM
Sbjct: 120 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 179

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI
Sbjct: 180 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 239

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
           +YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ 
Sbjct: 240 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 299

Query: 331 LRQNA 335
           +R++ 
Sbjct: 300 IRESL 304


>gi|322392541|ref|ZP_08066001.1| recombination protein A [Streptococcus peroris ATCC 700780]
 gi|321144533|gb|EFX39934.1| recombination protein A [Streptococcus peroris ATCC 700780]
          Length = 383

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 194/354 (54%), Positives = 263/354 (74%), Gaps = 6/354 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG GG+PKGRI
Sbjct: 18  ADREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRI 75

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+
Sbjct: 76  IEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDS 135

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +S
Sbjct: 136 GEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGAS 195

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSI 245
           I+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KD+ 
Sbjct: 196 INKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIKGTGDQKDTN 255

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAW+S+KG++
Sbjct: 256 VGKETKIKVVKNKVAPPFKEALVEIMYGEGISRTGELLKIASDLDIIQKAGAWYSYKGEK 315

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           +GQG EN+K +L ++ E  + I+  +R   GL+ +    + +  + D     + 
Sbjct: 316 IGQGSENAKKYLADHPEAFDEIDHQVRVQYGLIEEEEGSKESSVSVDTDSNQEV 369


>gi|309389279|gb|ADO77159.1| RecA protein [Halanaerobium praevalens DSM 2228]
          Length = 348

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 201/331 (60%), Positives = 263/331 (79%), Gaps = 2/331 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   DK KAL+ A+ +I++ +GKG+IM+LG    +   +E + +G+L LD+ALGIGG PK
Sbjct: 1   MATSDKEKALDKAVKRIEKQFGKGSIMRLGDSQKL--NVEAIPTGALPLDLALGIGGIPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E+YG ESSGKTTLALH IA++QK  G  AF+DAEHALD  YA+ LGV++ NLLISQ
Sbjct: 59  GRIIELYGNESSGKTTLALHIIAEAQKLDGIAAFIDAEHALDPKYAKNLGVNIDNLLISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+GE+ALEI + LVRS AVD++VIDSVAAL P+AE+EGDMG+S  G+QARLMSQA+RKL
Sbjct: 119 PDSGEEALEIGEALVRSNAVDLVVIDSVAALVPKAELEGDMGDSHMGLQARLMSQAMRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + +IS+SK  ++FINQ+R KIGVMFG+PETT GG ALKFYSSVR+++RR  +IKD D + 
Sbjct: 179 SGAISKSKAAVIFINQIREKIGVMFGNPETTPGGRALKFYSSVRIEMRRSQTIKDGDKLI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G+  +VKVVKNK+A+PF+  +FDIMYG GIS  G +IDLG +  IVD++G+W+S+   RL
Sbjct: 239 GSTAKVKVVKNKVAAPFRNCQFDIMYGTGISQSGCIIDLGEETGIVDRAGSWYSYGDVRL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           GQGR+NSK FL++N EI E I+  +R   GL
Sbjct: 299 GQGRQNSKEFLQDNPEIMEEIDDKIRIKIGL 329


>gi|33866594|ref|NP_898153.1| recombinase A [Synechococcus sp. WH 8102]
 gi|50403570|sp|Q7U4K5|RECA_SYNPX RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|33633372|emb|CAE08577.1| RecA bacterial DNA recombination protein [Synechococcus sp. WH
           8102]
          Length = 375

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 196/328 (59%), Positives = 253/328 (77%), Gaps = 3/328 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +  ++ KAL   L QI+R +GKG+IM+LG    +   +E +S+G+L LD+ALG GG+PKG
Sbjct: 16  SSGERDKALNLVLGQIERNFGKGSIMRLGDASRMR--VETISTGALTLDLALG-GGYPKG 72

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R+VEIYGPESSGKTTL LH IA+ QK GG  AFVDAEHALD +YA  LGVD++NLL+SQP
Sbjct: 73  RVVEIYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASLGVDVENLLVSQP 132

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGE ALEI D LVRS AVDI+VIDSVAALTPRAEIEG+MG+   G QARLMSQA+RK+T
Sbjct: 133 DTGEMALEIVDQLVRSAAVDIVVIDSVAALTPRAEIEGEMGDLAVGSQARLMSQAMRKIT 192

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            +I +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K      G
Sbjct: 193 GNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKKGTEEFG 252

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
            + +VKV KNK+A PF+  EFDI++G GIS  G L+DL  +  +V + GAW+S++G  +G
Sbjct: 253 IRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVIRKGAWYSYEGDNIG 312

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNA 335
           QGR+N+  ++ EN E A  IE L+RQ  
Sbjct: 313 QGRDNTITWMEENPEAAITIEQLVRQKL 340


>gi|212704760|ref|ZP_03312888.1| hypothetical protein DESPIG_02824 [Desulfovibrio piger ATCC 29098]
 gi|212671823|gb|EEB32306.1| hypothetical protein DESPIG_02824 [Desulfovibrio piger ATCC 29098]
          Length = 360

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 205/362 (56%), Positives = 271/362 (74%), Gaps = 4/362 (1%)

Query: 1   MDYRKEMNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIAL 59
           M  +  ++  + +++AL  AL+ I+R YGKGA+M+L  +  +   I V+ +GS+GLD+AL
Sbjct: 1   MAKKPALSPEEARAEALGTALATIERKYGKGAVMKLSDEAHV--NIPVIPTGSIGLDLAL 58

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           G+GG P+GRI EI+GPESSGKTTL LH IA+ QK GGTCAFVDAEHALD  YAR+LGV+ 
Sbjct: 59  GVGGIPRGRITEIFGPESSGKTTLTLHIIAECQKMGGTCAFVDAEHALDVNYARRLGVNT 118

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
             LLISQPD GEQAL+I DMLVRSGAVD++V+DSVAAL P+AE+EGDMGES  G  ARLM
Sbjct: 119 DELLISQPDYGEQALDIADMLVRSGAVDLVVVDSVAALIPQAELEGDMGESQVGGHARLM 178

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIG-VMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           S A+R+LT +I +S+  ++FINQ+RMKIG   +GSPETTTGGNALKFYSSVR+DIRR+ +
Sbjct: 179 SHAMRRLTGTIHKSRTSVIFINQIRMKIGVTGYGSPETTTGGNALKFYSSVRMDIRRIQT 238

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           +KDK+   G++TRVKVVKNK+A PF+   FDI+YG+GIS  GELIDLG++A I+++SG+W
Sbjct: 239 LKDKEESFGSRTRVKVVKNKVAPPFRSATFDILYGQGISRSGELIDLGLEAKIIEQSGSW 298

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           F+F  ++LGQGRE  +  L E+ E+   IE+ + +  G+     +          A   D
Sbjct: 299 FAFGSEKLGQGREKVRALLDEDPELRRQIEAKVTEFLGMHPQEFIPSEEDLDDGSAAMSD 358

Query: 359 TD 360
            D
Sbjct: 359 LD 360


>gi|296837419|gb|ADH59568.1| DNA recombinase [Burkholderia lata]
 gi|296837425|gb|ADH59571.1| DNA recombinase [Burkholderia lata]
          Length = 304

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 216/305 (70%), Positives = 266/305 (87%), Gaps = 1/305 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQN 334
            +R++
Sbjct: 300 RIRES 304


>gi|29350018|ref|NP_813521.1| recombinase A [Bacteroides thetaiotaomicron VPI-5482]
 gi|253572736|ref|ZP_04850136.1| recombinase A [Bacteroides sp. 1_1_6]
 gi|298384362|ref|ZP_06993922.1| protein RecA [Bacteroides sp. 1_1_14]
 gi|29341929|gb|AAO79715.1| RecA [Bacteroides thetaiotaomicron VPI-5482]
 gi|251837636|gb|EES65727.1| recombinase A [Bacteroides sp. 1_1_6]
 gi|298262641|gb|EFI05505.1| protein RecA [Bacteroides sp. 1_1_14]
          Length = 344

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 198/335 (59%), Positives = 266/335 (79%), Gaps = 2/335 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +   +M   +K KAL+A + +I++ +GKG+IM++G      E +EV+ +GS+ L++ALG+
Sbjct: 10  ETDNKMASSEKLKALQATMEKIEKNFGKGSIMKMGDDS--VEQVEVIPTGSIALNVALGV 67

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+P+GRI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ N
Sbjct: 68  GGYPRGRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDN 127

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L ISQPD GEQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++  G+QARLMSQ
Sbjct: 128 LWISQPDNGEQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQ 187

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT ++S+++   +FINQ+R KIGVMFG+PETTTGGNALKFY+SVR+DIR    IKD
Sbjct: 188 ALRKLTGTVSKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRIDIRGSQPIKD 247

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            + + G  T+VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG +  I+ KSG+W+S+
Sbjct: 248 GEEVLGKLTKVKVVKNKVAPPFRKAEFDIMFGEGISHSGEIIDLGAELGIIKKSGSWYSY 307

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAG 336
              +LGQGR+ +K+ +++N E+AE +E L+ +   
Sbjct: 308 NDTKLGQGRDAAKVCIKDNPELAEELEGLIFEALN 342


>gi|284929383|ref|YP_003421905.1| RecA protein [cyanobacterium UCYN-A]
 gi|284809827|gb|ADB95524.1| RecA protein [cyanobacterium UCYN-A]
          Length = 345

 Score =  346 bits (887), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 197/343 (57%), Positives = 253/343 (73%), Gaps = 4/343 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  DK KAL+  L+QI+R +GKGAIM+LG    +   +E VS+G+L LD+ALG GG PKG
Sbjct: 6   NNNDKEKALDLVLNQIERNFGKGAIMRLGDAAKM--KVETVSTGALTLDLALG-GGLPKG 62

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EIYGPESSGKTTL LH IA+ QK GG  AFVDAEHALD  YA  LGVD+ NLL++QP
Sbjct: 63  RIIEIYGPESSGKTTLTLHAIAEVQKAGGVAAFVDAEHALDPSYASVLGVDIDNLLVAQP 122

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGE  LEI D LVRS AVDIIVIDSVAAL PRAEIEG+MG++  G+QARLMS+ALRK+ 
Sbjct: 123 DTGESGLEIVDQLVRSSAVDIIVIDSVAALVPRAEIEGEMGDTQVGLQARLMSKALRKIA 182

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-IT 246
            ++ RS C++VF+NQ+R KIGV +GSPE TTGG ALKFY+SVRLDIRR+ ++K       
Sbjct: 183 GNVGRSGCLVVFLNQLRQKIGVTYGSPEVTTGGTALKFYASVRLDIRRIQTLKKGTEGEY 242

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G + +VKV KNK+A PF+  EFDI++G+GIS  G +IDL  + +++ + GAW+S+ G  +
Sbjct: 243 GIRAKVKVAKNKVAPPFRIAEFDIIFGQGISNIGCIIDLAEQTNVISRKGAWYSYNGDNI 302

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
            QGR+N+  +L EN E  + IE  +R+   L +  +   P  N
Sbjct: 303 SQGRDNAVKYLEENSEFTKIIEQQVREKLALESLEINASPENN 345


>gi|153807776|ref|ZP_01960444.1| hypothetical protein BACCAC_02059 [Bacteroides caccae ATCC 43185]
 gi|149129385|gb|EDM20599.1| hypothetical protein BACCAC_02059 [Bacteroides caccae ATCC 43185]
          Length = 344

 Score =  346 bits (887), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 198/334 (59%), Positives = 266/334 (79%), Gaps = 2/334 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +   +M   +K KAL+AA+ +I++ +GKG+IM++G      E +EV+ +GS+ L++ALG+
Sbjct: 10  ETDNKMASSEKLKALQAAMEKIEKSFGKGSIMKMGDDS--VEQVEVIPTGSIALNVALGV 67

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+P+GRI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGV++ +
Sbjct: 68  GGYPRGRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVNIDD 127

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L ISQPD GEQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++  G+QARLMSQ
Sbjct: 128 LYISQPDNGEQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQ 187

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT+++S+++   +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR   +IKD
Sbjct: 188 ALRKLTAAVSKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQAIKD 247

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            + + G  T+VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG    I+ KSG+W+S+
Sbjct: 248 GEEVLGKLTKVKVVKNKVAPPFRRAEFDIMFGEGISHSGEIIDLGADLGIIKKSGSWYSY 307

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
              +LGQGR+ +K  + +N E+AE +E L+ +  
Sbjct: 308 NDTKLGQGRDAAKQCIADNPELAEELEGLIFEAL 341


>gi|325106520|ref|YP_004276174.1| recA protein [Pedobacter saltans DSM 12145]
 gi|324975368|gb|ADY54352.1| recA protein [Pedobacter saltans DSM 12145]
          Length = 341

 Score =  346 bits (887), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 209/327 (63%), Positives = 264/327 (80%), Gaps = 2/327 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  +K KAL+  L ++++ YGKG +M+LG   +  E +E +S+GSLGLDIALGIGG PKG
Sbjct: 3   NPSEKLKALQLTLDKLEKSYGKGTVMKLGD--APVEAMEAISTGSLGLDIALGIGGLPKG 60

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EIYGPESSGKTTLA H IA++QK GG  A +DAEHA D  YA+KLGVD++NLLISQP
Sbjct: 61  RIIEIYGPESSGKTTLATHVIAEAQKAGGIAAIIDAEHAFDQFYAQKLGVDIENLLISQP 120

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI D L+RSGA+D+IVIDSVAAL P+ EIEG+MG+S  G+QARLMSQALRKLT
Sbjct: 121 DNGEQALEIADNLIRSGAIDVIVIDSVAALVPKGEIEGEMGDSKMGLQARLMSQALRKLT 180

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            +IS++KC  +FINQ+R KIGVMFG+PETTTGGNALKFYSSVRLDIRR+  IKD D + G
Sbjct: 181 GTISKTKCCCIFINQLRDKIGVMFGNPETTTGGNALKFYSSVRLDIRRISQIKDSDEVAG 240

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+ +VK+VKNK+A PF+  EFDIM+GEGIS  GE+IDLGV+  I+ K+G+WFS+   +LG
Sbjct: 241 NRVKVKIVKNKVAPPFRIAEFDIMFGEGISKAGEIIDLGVEYGIIKKAGSWFSYGDSKLG 300

Query: 308 QGRENSKIFLRENIEIAENIESLLRQN 334
           QGR+  K  + +N E+AE +E+ ++  
Sbjct: 301 QGRDAVKQLIMDNPELAEELEAKIKAE 327


>gi|60393008|sp|Q45791|RECA_BACTN RecName: Full=Protein RecA; AltName: Full=Recombinase A
          Length = 330

 Score =  346 bits (887), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 198/330 (60%), Positives = 264/330 (80%), Gaps = 2/330 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K KAL+A + +I++ +GKG+IM++G      E +EV+ +GS+ L++ALG+GG+P+
Sbjct: 1   MASSEKLKALQATMEKIEKNFGKGSIMKMGDDS--VEQVEVIPTGSIALNVALGVGGYPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQ
Sbjct: 59  GRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++  G+QARLMSQALRKL
Sbjct: 119 PDNGEQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T ++S+++   +FINQ+R KIGVMFG+PETTTGGNALKFY+SVR+DIR    IKD + + 
Sbjct: 179 TGTVSKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRIDIRGSQPIKDGEEVL 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G  T+VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG +  I+ KSG+W+S+   +L
Sbjct: 239 GKLTKVKVVKNKVAPPFRKAEFDIMFGEGISHSGEIIDLGAELGIIKKSGSWYSYNDTKL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAG 336
           GQGR+ +K+ +++N E+AE +E L+ +   
Sbjct: 299 GQGRDAAKVCIKDNPELAEELEGLIFEALN 328


>gi|154148649|ref|YP_001407297.1| recombinase A [Campylobacter hominis ATCC BAA-381]
 gi|166220636|sp|A7I456|RECA_CAMHC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|153804658|gb|ABS51665.1| protein RecA [Campylobacter hominis ATCC BAA-381]
          Length = 348

 Score =  346 bits (887), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 208/347 (59%), Positives = 269/347 (77%), Gaps = 3/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K LE+AL  I + +GKG +++LG +    E I+ +S+GS+GLDIALGIGG PKGRIV
Sbjct: 4   NKKKMLESALKSIDKAFGKGTLVRLGDKE--VEKIDSISTGSVGLDIALGIGGVPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD  YA  LGVD+ NL +SQPD G
Sbjct: 62  EIYGPESSGKTTLTLHIIAECQKKGGVCAFVDAEHALDVKYAANLGVDVDNLYVSQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL+I + L +SGA+D++V+DSVAALTP++EIEGDMG+   G+QARLMSQALRKLT  +
Sbjct: 122 EQALDIVETLAKSGAIDLVVVDSVAALTPKSEIEGDMGDQHVGLQARLMSQALRKLTGVV 181

Query: 191 SRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKI  + +GSPETTTGGNALKFY+SVRLDIRR+ ++K  D   GN+
Sbjct: 182 HKMGTTVIFINQIRMKIGQMGYGSPETTTGGNALKFYASVRLDIRRIATLKQNDESIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PFK  EFDIM+GEGIS  GEL+D GVK  IVDKSG+WFS+K ++LGQG
Sbjct: 242 AKVKVVKNKVAPPFKVAEFDIMFGEGISKMGELVDYGVKLDIVDKSGSWFSYKDKKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           REN+KI+L+EN ++A+ I + +R+  G  + S   +     ++  ++
Sbjct: 302 RENAKIYLKENPKVADEILAAIREQMGSESLSSSSDDDDIKEESGEE 348


>gi|47571254|gb|AAT35784.1| RecA [Mycobacterium intracellulare ATCC 13950]
 gi|90654496|gb|ABD96034.1| RecA [Mycobacterium indicus pranii]
          Length = 304

 Score =  346 bits (887), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 193/302 (63%), Positives = 251/302 (83%), Gaps = 2/302 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 5   PDREKALELAMAQIEKSYGKGSVMRLGDE--MRQPISVIPTGSIALDVALGIGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 63  VEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T +
Sbjct: 123 GEQALEIADMLIRSGALDILVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+
Sbjct: 183 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVK+VKNK++ PFKQ EFDI+YG GIS  G LID+GV    + KSG+WF+++G++LGQG
Sbjct: 243 TRVKIVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGSWFTYEGEQLGQG 302

Query: 310 RE 311
           +E
Sbjct: 303 KE 304


>gi|15644782|ref|NP_206952.1| recombinase A [Helicobacter pylori 26695]
 gi|2507284|sp|P42445|RECA_HELPY RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|2313235|gb|AAD07218.1| recombinase (recA) [Helicobacter pylori 26695]
          Length = 347

 Score =  346 bits (887), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 202/343 (58%), Positives = 269/343 (78%), Gaps = 4/343 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+  A+ QI +V+GKGA+++LG +    E I+ +S+GSLGLD+ALGIGG PKGRI+
Sbjct: 6   DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDSISTGSLGLDLALGIGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  +
Sbjct: 124 EQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183

Query: 191 SRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    L+FINQ+RMKI  + +GSPETTTGGNALKFY+SVR+DIRR+ S+K  +   GN+
Sbjct: 184 HKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIASLKQNEQHIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF++ EFDIM+GEGIS  GE+ID GVK  IVDKSGAW S++ ++LGQG
Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           REN+K  L+E+  +A+ I   ++++ G   + ++  P    ++
Sbjct: 304 RENAKALLKEDKALADEITLKIKESIG-SNEEIMPLPDEPLEE 345


>gi|296837407|gb|ADH59562.1| DNA recombinase [Burkholderia contaminans]
          Length = 304

 Score =  346 bits (887), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 215/305 (70%), Positives = 265/305 (86%), Gaps = 1/305 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+
Sbjct: 1   SIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IV
Sbjct: 60  LQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM
Sbjct: 120 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 179

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI
Sbjct: 180 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 239

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
           +YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ 
Sbjct: 240 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 299

Query: 331 LRQNA 335
           +R++ 
Sbjct: 300 IRESL 304


>gi|317968811|ref|ZP_07970201.1| recombinase A [Synechococcus sp. CB0205]
          Length = 370

 Score =  346 bits (887), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 194/343 (56%), Positives = 252/343 (73%), Gaps = 3/343 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           D        ++ KAL   L+QI+R +GKG+IM+LG    +   IE   +G+L LD+ALG 
Sbjct: 5   DKSTSAKSPERDKALGLVLNQIERNFGKGSIMRLGDASRMR--IETTPTGALTLDLALG- 61

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+PKGR+VE+YGPESSGKTTL LH IA+ Q+ GG  AFVDAEHALD +YA  LGVD++N
Sbjct: 62  GGYPKGRVVEVYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAAALGVDIEN 121

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGE ALEI D LVRS AVDI+V+DSVAALTPR+EIEG+MG+   G QARLMSQ
Sbjct: 122 LLVSQPDTGEMALEIVDQLVRSAAVDIVVVDSVAALTPRSEIEGEMGDLAVGSQARLMSQ 181

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RK+T +I +S C ++F+NQ+R KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K 
Sbjct: 182 AMRKITGNIGKSGCTVIFLNQLRQKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKR 241

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
                G + +VKV KNK+A PF+  EFDI++G GIS  G L+DL  +  +V + GAW+S+
Sbjct: 242 GTEEFGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTVGCLLDLAEEHGVVVRKGAWYSY 301

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
           +G  +GQGR+N+  +L +N    E IE  +RQ      DSL  
Sbjct: 302 EGDNIGQGRDNTITWLEQNSTEKEAIEVKVRQKLSETTDSLKP 344


>gi|315453305|ref|YP_004073575.1| recA protein [Helicobacter felis ATCC 49179]
 gi|315132357|emb|CBY82985.1| recA protein [Helicobacter felis ATCC 49179]
          Length = 337

 Score =  346 bits (887), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 210/325 (64%), Positives = 263/325 (80%), Gaps = 3/325 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+ A+ QI + +GKGA+M+ G +    E IE  S+GSLGLD+ALGIGG P+GRI+E
Sbjct: 5   KQKALDLAIRQIDKTFGKGALMRWGDKE--IEPIEATSTGSLGLDMALGIGGVPRGRIIE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IAQ+QK GG CAF+DAEHALD  YA+KLGVD+ NLLISQPDTGE
Sbjct: 63  IYGPESSGKTTLTLHVIAQAQKEGGVCAFIDAEHALDVEYAKKLGVDVDNLLISQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           +ALEI + L RSGAVD+I +DSVAALTPRAEIEGDMG+   G+QARLMSQALRK+T  + 
Sbjct: 123 EALEILETLARSGAVDVIAVDSVAALTPRAEIEGDMGDQHVGLQARLMSQALRKITGVLH 182

Query: 192 RSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +    L+FINQ+RMKI  + +GSPETTTGGNALKFY+SVRLDIRR+ ++K  D   GN+ 
Sbjct: 183 KMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRLDIRRIATLKQNDQSIGNRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PFK+ EFD++YGEGIS  GELID GVK  IV+K+GAWFS++ ++LGQG+
Sbjct: 243 KVKVVKNKVAPPFKEAEFDVIYGEGISRVGELIDYGVKLEIVEKNGAWFSYQDKKLGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
           E S++ L+EN E+A  IE+ +++  
Sbjct: 303 EASRLLLKENPELALEIEAKIKEKL 327


>gi|296837363|gb|ADH59540.1| DNA recombinase [Burkholderia contaminans]
          Length = 305

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 215/306 (70%), Positives = 265/306 (86%), Gaps = 1/306 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGE IS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGESISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQNA 335
            +R++ 
Sbjct: 300 RIRESL 305


>gi|108562576|ref|YP_626892.1| recombinase A [Helicobacter pylori HPAG1]
 gi|207091965|ref|ZP_03239752.1| recombinase A [Helicobacter pylori HPKX_438_AG0C1]
 gi|217031914|ref|ZP_03437416.1| hypothetical protein HPB128_3g33 [Helicobacter pylori B128]
 gi|298736903|ref|YP_003729433.1| recombination protein RecA [Helicobacter pylori B8]
 gi|122980560|sp|Q1CV04|RECA_HELPH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|107836349|gb|ABF84218.1| recombinase RecA [Helicobacter pylori HPAG1]
 gi|216946383|gb|EEC24988.1| hypothetical protein HPB128_3g33 [Helicobacter pylori B128]
 gi|298356097|emb|CBI66969.1| recombination protein RecA [Helicobacter pylori B8]
          Length = 347

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 201/343 (58%), Positives = 269/343 (78%), Gaps = 4/343 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+  A+ QI +V+GKGA+++LG +    E I+ +S+GSLGLD+ALGIGG PKGRI+
Sbjct: 6   DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDAISTGSLGLDLALGIGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  +
Sbjct: 124 EQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183

Query: 191 SRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    L+FINQ+RMKI  + +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+
Sbjct: 184 HKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF++ EFDIM+GEGIS  GE+ID GVK  IVDKSGAW S++ ++LGQG
Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           REN+K  L+E+  +A+ I   ++++ G   + ++  P    ++
Sbjct: 304 RENAKALLKEDKALADEITLKIKESIG-SNEEIMPLPDEPLEE 345


>gi|139439622|ref|ZP_01773035.1| Hypothetical protein COLAER_02062 [Collinsella aerofaciens ATCC
           25986]
 gi|133774963|gb|EBA38783.1| Hypothetical protein COLAER_02062 [Collinsella aerofaciens ATCC
           25986]
          Length = 360

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 197/342 (57%), Positives = 255/342 (74%), Gaps = 1/342 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           +    ++I++ +G+G+IM+ G  G   E +E + +G+L LD ALGIGG P+GRIVEIYGP
Sbjct: 2   IATTKAEIEKKFGQGSIMRYGDGGPELE-VEAIPTGALALDAALGIGGVPRGRIVEIYGP 60

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL+L  +A++Q  GG  AF+DAEHALD  YA ++GVD+  +LISQPDTGEQALE
Sbjct: 61  ESSGKTTLSLEILAEAQAMGGVVAFIDAEHALDPTYAARIGVDIDEVLISQPDTGEQALE 120

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I DMLVRSGA+D IV+DSVAALTPRAEIEG++G++  G+QARLMSQALRKL  S+S+S  
Sbjct: 121 IVDMLVRSGAIDAIVVDSVAALTPRAEIEGEIGDTTVGLQARLMSQALRKLAGSLSKSNT 180

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
             +FINQ+R KIGVMFG+PETTTGG ALKF+SSVR+DIRR+ SIK KD + GN+ R KVV
Sbjct: 181 TCIFINQLREKIGVMFGNPETTTGGRALKFFSSVRIDIRRIDSIKLKDEVIGNRVRAKVV 240

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK+A+PF+  EFDIMYG GIS  G ++D+ V+  I  K G+WF++   +LG GRE +K 
Sbjct: 241 KNKVAAPFRSAEFDIMYGTGISKEGSILDMAVECGICKKMGSWFAYGEDKLGNGREAAKA 300

Query: 316 FLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           FLRE+ + A+ IE  +R   GL  D         T   A ++
Sbjct: 301 FLREHPDCADEIEHKVRLACGLEFDDDAPSEVELTDQPAPEE 342


>gi|317474149|ref|ZP_07933426.1| recA bacterial DNA recombination protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|316909720|gb|EFV31397.1| recA bacterial DNA recombination protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 331

 Score =  346 bits (886), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 202/325 (62%), Positives = 267/325 (82%), Gaps = 2/325 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K KAL+AA+ +I++ +GKG+IM++G +    E +EV+ +GS+GL++ALG+GG+P+
Sbjct: 1   MAASEKLKALQAAMDKIEKSFGKGSIMKMGDES--VEQVEVIPTGSIGLNVALGVGGYPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NLLISQ
Sbjct: 59  GRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLLISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI + L+RS A+DIIV+DSVAALTP+AEIEGDMG++  G+QARLMSQALRKL
Sbjct: 119 PDNGEQALEIAEQLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS++S+++   +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR   +IK+ + + 
Sbjct: 179 TSAVSKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGGQAIKNGEEVI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G QT+VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG +  IV KSG+WFS+   ++
Sbjct: 239 GKQTKVKVVKNKVAPPFRRAEFDIMFGEGISRAGEIIDLGAELGIVKKSGSWFSYNDTKI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLL 331
            QGR+ +K  + +N E+AE +E L+
Sbjct: 299 AQGRDAAKQVILDNPELAEELEGLI 323


>gi|218259590|ref|ZP_03475282.1| hypothetical protein PRABACTJOHN_00941 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225002|gb|EEC97652.1| hypothetical protein PRABACTJOHN_00941 [Parabacteroides johnsonii
           DSM 18315]
          Length = 347

 Score =  346 bits (886), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 209/334 (62%), Positives = 267/334 (79%), Gaps = 2/334 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
              K     DK KAL AA+ +I++ YGKG+IM+LG +    E IEV+ +GS+ L+ ALG+
Sbjct: 14  AAEKPAVNADKLKALRAAMDKIEKNYGKGSIMKLGDES--VENIEVIPTGSIALNAALGV 71

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+PKGR++EIYGPESSGKTTLA+H IA++QK+GG  AF+DAEHA D  YA KLGVD++N
Sbjct: 72  GGYPKGRVIEIYGPESSGKTTLAIHAIAEAQKSGGIAAFIDAEHAFDRFYAEKLGVDVEN 131

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L ISQPD GEQALEI + L+RS AVDIIVIDSVAALTP+AEIEGDMGES  G+QARLMSQ
Sbjct: 132 LWISQPDNGEQALEIAEQLIRSSAVDIIVIDSVAALTPKAEIEGDMGESKMGLQARLMSQ 191

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT++I+++    +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR +G +KD
Sbjct: 192 ALRKLTAAINKTNTTCIFINQLRDKIGVMFGNPETTTGGNALKFYASVRLDIRSIGKLKD 251

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            D I GNQ RVKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG + +I+ KSG+W+S+
Sbjct: 252 GDDIKGNQVRVKVVKNKVAPPFRKAEFDIMFGEGISKAGEIIDLGAELNIIKKSGSWYSY 311

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
              +LGQGR+ +K  + +N E+A+ +  L+ +  
Sbjct: 312 NDTKLGQGRDAAKQCVADNPELADELSGLIFEAL 345


>gi|281210244|gb|EFA84411.1| recombinase A [Polysphondylium pallidum PN500]
          Length = 453

 Score =  346 bits (886), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 202/355 (56%), Positives = 270/355 (76%), Gaps = 6/355 (1%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           S  LE+ +++I++ +GKG +M+LG+     + ++V+SSGSLGLD+ALGIGG PKGRI+EI
Sbjct: 92  SSQLESTMAEIEKTFGKGTLMKLGT-SFATQKVDVISSGSLGLDVALGIGGLPKGRIIEI 150

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           +GPESSGKTTLALH IAQ+QK GG C F+DAEHAL+  +A+KLGV+L  L ISQPD+GEQ
Sbjct: 151 FGPESSGKTTLALHVIAQAQKAGGNCTFIDAEHALNPSWAQKLGVNLDELFISQPDSGEQ 210

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEI D L+RS  + +IV+DSVAAL PR E+EG+MG+S  G+QARLMSQALRKL+ ++  
Sbjct: 211 ALEIVDSLLRSKTMQVIVVDSVAALVPRVELEGEMGDSHVGVQARLMSQALRKLSPNLKE 270

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           S CIL+FINQ+RMKIGVMFG+PETTTGGNALKF+SS+RLDIR++G++K  +    +Q RV
Sbjct: 271 SNCILIFINQIRMKIGVMFGNPETTTGGNALKFFSSIRLDIRKIGAVKKGEEAIASQVRV 330

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KV KNK+A PF++  FDI +  GI+  GE+ID+ V   I++K G+W+S+  Q+L QGRE 
Sbjct: 331 KVAKNKLAPPFREAVFDIDFVSGINKTGEIIDMAVTEGIIEKGGSWYSYNQQQLAQGREK 390

Query: 313 SKIFLRENIEIAENIESLLRQNA--GLVADSLLQEPAINTKDDADKD---DTDNV 362
           +K +L +N E+   IES LRQ     +V  S L +   + KD+ D D   D+DN 
Sbjct: 391 TKQYLEDNQELLNEIESKLRQRLVKSVVPTSKLNDNNEDYKDEYDHDVDGDSDNT 445


>gi|119512651|ref|ZP_01631726.1| recombination protein [Nodularia spumigena CCY9414]
 gi|119462722|gb|EAW43684.1| recombination protein [Nodularia spumigena CCY9414]
          Length = 356

 Score =  346 bits (886), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 196/328 (59%), Positives = 250/328 (76%), Gaps = 3/328 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL   L+QI+R +GKGAIM+LG    +   +E +S+G+L LD+ALG GG PKGR++E
Sbjct: 10  KEKALNIVLNQIERSFGKGAIMRLGDATRMR--VETISTGALTLDLALG-GGLPKGRVIE 66

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH +A+ QK GG  AFVDAEHALD  YA  LGVD++NLL+SQPDTGE
Sbjct: 67  IYGPESSGKTTVALHALAEVQKNGGVAAFVDAEHALDPTYAAALGVDIENLLVSQPDTGE 126

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
            ALEI D LVRS AVDI+VIDSVAAL PRAEIEGDMG+   G+QARLMSQALRK+T +I 
Sbjct: 127 SALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEGDMGDIHVGLQARLMSQALRKITGNIG 186

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S C ++FINQ+R KIG+ +GSPETTTGGNALKFY+SVRLDIRR+ ++K      GN+ +
Sbjct: 187 KSGCTVIFINQLRQKIGITYGSPETTTGGNALKFYASVRLDIRRIQTLKKGTEEFGNRVK 246

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV KNK+A PF+  EFDI++G+G+S  G L+DL  +  I+ + GAW+S+ G  + QGR+
Sbjct: 247 VKVAKNKVAPPFRVAEFDIIFGKGVSTLGCLVDLAEETGIIVRKGAWYSYNGDNISQGRD 306

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVA 339
           N+  +L E  E    I+ L+RQ   + A
Sbjct: 307 NAIKYLEEKPEFTAEIKELVRQKLDMGA 334


>gi|261837604|gb|ACX97370.1| recombinase [Helicobacter pylori 51]
          Length = 347

 Score =  346 bits (886), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 201/343 (58%), Positives = 268/343 (78%), Gaps = 4/343 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+  A+ QI +V+GKGA+++LG +    E I+ +S+GSLGLD+ALGIGG PKGRI+
Sbjct: 6   DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDSISTGSLGLDLALGIGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  +
Sbjct: 124 EQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183

Query: 191 SRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    L+FINQ+RMKI  + +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+
Sbjct: 184 HKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIATLKQNEQHIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF++ EFDIM+GEGIS  GE+ID GVK  IVDKSGAW S++ ++LGQG
Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           REN+K  L+E+  +A  I   ++++ G   + ++  P    ++
Sbjct: 304 RENAKALLKEDKALANEITLKIKESIG-SNEEIMPLPDEPLEE 345


>gi|15611211|ref|NP_222862.1| recombinase A [Helicobacter pylori J99]
 gi|254778869|ref|YP_003056974.1| recombinase A [Helicobacter pylori B38]
 gi|10720255|sp|Q9ZMS7|RECA_HELPJ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|4154654|gb|AAD05722.1| RECA PROTEIN [Helicobacter pylori J99]
 gi|254000780|emb|CAX28704.1| Protein recA (Recombinase A) [Helicobacter pylori B38]
 gi|317013573|gb|ADU81009.1| recombinase A [Helicobacter pylori Gambia94/24]
          Length = 347

 Score =  346 bits (886), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 199/343 (58%), Positives = 267/343 (77%), Gaps = 4/343 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+  A+ QI +V+GKGA+++LG +    E I+ +S+GSLGLD+ALGIGG PKGRI+
Sbjct: 6   DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDAISTGSLGLDLALGIGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQP TG
Sbjct: 64  EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  +
Sbjct: 124 EEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183

Query: 191 SRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    L+FINQ+RMKI    +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+
Sbjct: 184 HKMNTTLIFINQIRMKIGMTGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF++ EFDIM+GEGIS  GE+ID GVK  IVDKSGAW S++ ++LGQG
Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           REN+K  L+E+  +A+ I   ++++ G   + ++  P    ++
Sbjct: 304 RENAKALLKEDKALADEITLKIKESIG-SNEEIMPLPDEPLEE 345


>gi|159904222|ref|YP_001551566.1| recombinase A [Prochlorococcus marinus str. MIT 9211]
 gi|238687121|sp|A9BCQ0|RECA_PROM4 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|159889398|gb|ABX09612.1| RecA bacterial DNA recombination protein [Prochlorococcus marinus
           str. MIT 9211]
          Length = 367

 Score =  346 bits (886), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 191/325 (58%), Positives = 255/325 (78%), Gaps = 3/325 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL   L QI+R +GKG+IM+LG    +   +E +S+G+L LD+ALG GG+PKGR+V
Sbjct: 24  ERDKALNLVLGQIERNFGKGSIMRLGDASRMR--VETISTGALTLDLALG-GGYPKGRVV 80

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           E+YGPESSGKTTL LH IA+ Q+ GG  AFVDAEHALD +YA  LGVD++NLL+SQPDTG
Sbjct: 81  EVYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTG 140

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E ALEI D L+RS AV+++V+DSVAALTPRAEIEG+MG+ + G QARLMSQA+RK+T +I
Sbjct: 141 EMALEIVDQLIRSAAVELVVVDSVAALTPRAEIEGEMGDHVIGSQARLMSQAMRKITGNI 200

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K      G + 
Sbjct: 201 GKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTDEYGIRA 260

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKV KNK+A PF+  EFDI++G+GIS  G L+DL  + +IV + GAW+S++G  +GQGR
Sbjct: 261 KVKVAKNKVAPPFRIAEFDILFGKGISTIGCLLDLAEETNIVARKGAWYSYEGDNIGQGR 320

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
           +N+  +L +N E  E IE L+RQ  
Sbjct: 321 DNTITWLEQNTEAKEKIEKLVRQKL 345


>gi|464599|sp|P33542|RECA_AQUPY RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|349397|gb|AAA67702.1| DNA repair protein [Aquifex pyrophilus]
          Length = 348

 Score =  346 bits (886), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 189/344 (54%), Positives = 252/344 (73%), Gaps = 2/344 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N+ +K KALE ALS I++ +GKGA+M L  +      +E + +GS+ LDIA G+GG PKG
Sbjct: 7   NLSEKMKALEVALSSIEKRFGKGAVMPL--KAVETVEVETIPTGSISLDIATGVGGIPKG 64

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI EI+G ESSGKTTLALH IA++QK GG   F+DAEHALD  YA+KLGVD+ NL ISQP
Sbjct: 65  RITEIFGVESSGKTTLALHVIAEAQKRGGVAVFIDAEHALDPKYAKKLGVDVDNLYISQP 124

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI + L+ SGAVD+IV+DSVAAL P+ E+EG+MGE+  G QARLMSQALRKL 
Sbjct: 125 DYGEQALEIAESLINSGAVDVIVVDSVAALVPKDELEGEMGEAQVGKQARLMSQALRKLK 184

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++ RS   L+FINQ+R KIGVMFG+PETT GG ALKF+S +RL++RR+G +K+     G
Sbjct: 185 GAVHRSNTALIFINQIREKIGVMFGNPETTPGGRALKFFSDMRLEVRRLGDVKEGGEKKG 244

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
            + +V+VVKNK+A PF++ EFD++YGEGI    ++ID      ++ KSG+W+S+  +RLG
Sbjct: 245 YRVKVRVVKNKLAPPFQEAEFDVIYGEGICRICDIIDTAANLGVITKSGSWYSYGEKRLG 304

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           QGRE +K +L E+ E+ E IE  +R+ +GLV           ++
Sbjct: 305 QGREQAKKYLLEHPEMLEEIERKVREVSGLVRPDTENSVGEKSE 348


>gi|329961403|ref|ZP_08299526.1| RecA protein [Bacteroides fluxus YIT 12057]
 gi|328531880|gb|EGF58703.1| RecA protein [Bacteroides fluxus YIT 12057]
          Length = 345

 Score =  346 bits (886), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 202/334 (60%), Positives = 268/334 (80%), Gaps = 2/334 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +    M   +K KAL+AA+ +I++ +GKG+IM++G +    E +EV+ +GS+GL++ALG+
Sbjct: 10  ENGTNMASSEKLKALQAAMDKIEKSFGKGSIMKMGDES--VEQVEVIPTGSIGLNVALGV 67

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+P+GRI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ N
Sbjct: 68  GGYPRGRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDN 127

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLISQPD GEQALEI + L+RS A+DIIV+DSVAALTP+AEIEGDMG++  G+QARLMSQ
Sbjct: 128 LLISQPDNGEQALEIAEQLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQ 187

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLTS++S+++   +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR   +IK+
Sbjct: 188 ALRKLTSAVSKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQAIKN 247

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            D + G QT+VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG    I+ KSG+WFS+
Sbjct: 248 GDEVIGKQTKVKVVKNKVAPPFRRAEFDIMFGEGISRAGEIIDLGADLGIIKKSGSWFSY 307

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
              ++ QGR+ +K  + +N E+AE +E L+ +  
Sbjct: 308 NDTKIAQGRDAAKQVILDNPELAEELEGLIFEEL 341


>gi|317011998|gb|ADU82606.1| recombinase A [Helicobacter pylori Lithuania75]
          Length = 347

 Score =  346 bits (886), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 202/343 (58%), Positives = 268/343 (78%), Gaps = 4/343 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+  A+ QI +V+GKGA+++LG +    E I+ +S+GSLGLD+ALGIGG PKGRI+
Sbjct: 6   DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDSISTGSLGLDLALGIGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  +
Sbjct: 124 EQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183

Query: 191 SRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    L+FINQ+RMKI  + +GSPETTTGGNALKFY+SVR+DIRR+ S+K  +   GN+
Sbjct: 184 HKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIASLKQNEQHIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF++ EFDIM+GEGIS  GE+ID GVK  IVDKSGAW S++ ++LGQG
Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           REN+K  L+E+  +A  I   ++++ G   + ++  P    ++
Sbjct: 304 RENAKALLKEDKALANEITLKIKESIG-SNEEIMPLPDEPLEE 345


>gi|284044699|ref|YP_003395039.1| recA protein [Conexibacter woesei DSM 14684]
 gi|283948920|gb|ADB51664.1| recA protein [Conexibacter woesei DSM 14684]
          Length = 360

 Score =  346 bits (886), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 192/351 (54%), Positives = 268/351 (76%), Gaps = 2/351 (0%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
            ++ +   +  AL+ AL+QI+R +GKG +M++G  G+    +  + +G+L LD+ALGIGG
Sbjct: 3   EQDKSAKARDAALQGALTQIERQFGKGTVMRMGDPGARVR-VNAIPTGALSLDLALGIGG 61

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P+GRIVE++GPESSGKTTL  H IA++Q+ GG CAF+DAEHA+D +YA+++GV++ +LL
Sbjct: 62  VPRGRIVEVFGPESSGKTTLVYHIIAEAQRLGGVCAFIDAEHAMDPLYAQRIGVNIDDLL 121

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPD GEQALE+ DMLVRSGAVD++ +DSVAALTPRAE+EG MG+   G+QAR+MSQA+
Sbjct: 122 VSQPDYGEQALEVADMLVRSGAVDMVAVDSVAALTPRAELEGAMGDQTVGVQARMMSQAM 181

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT++++R++ + +F NQ+R K+GVMFGSPET  GG ALKFYSS RLDIRR+ ++KD  
Sbjct: 182 RKLTANLNRTQTMCLFTNQIREKVGVMFGSPETQPGGRALKFYSSQRLDIRRIETLKDGT 241

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
              GN+ RVKVVKNK+A PFKQ EFDI +G+GIS  G LID G++ +IV KSG++FS+  
Sbjct: 242 EAVGNRVRVKVVKNKVAPPFKQAEFDIEFGQGISTEGCLIDYGIEHNIVTKSGSFFSYGD 301

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ-EPAINTKDD 353
           +RLGQGR N+K +L+E+ E+A+ IE  +    G   D +   EP     ++
Sbjct: 302 ERLGQGRNNAKNYLKEHGEVAKEIEDKIYAALGFDRDLVAPIEPNERAVEE 352


>gi|310830471|ref|YP_003965572.1| Protein recA [Paenibacillus polymyxa SC2]
 gi|309249938|gb|ADO59504.1| Protein recA [Paenibacillus polymyxa SC2]
          Length = 348

 Score =  346 bits (886), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 208/345 (60%), Positives = 272/345 (78%), Gaps = 5/345 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           D+  ALE+AL QI++ +GKG+IM+LG + ++   IE VSSGSL LD+ALGIGGFPKGRIV
Sbjct: 4   DRKLALESALRQIEKQFGKGSIMKLGEKTNM--AIEAVSSGSLHLDLALGIGGFPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +A+ QK GG  AF+DAEHALD +YA  +GV++  LLISQPDTG
Sbjct: 62  EIYGPESSGKTTVALHAVAEVQKAGGQAAFIDAEHALDPVYAANIGVNIDELLISQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI + LVRSGAVD+I+IDSVAAL P+AE+EGDMG+S  G+QARLMSQALRKL+ +I
Sbjct: 122 EQGLEIAESLVRSGAVDVIIIDSVAALVPKAELEGDMGQSHVGLQARLMSQALRKLSGAI 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK + +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+R++ ++K  D +  N+T
Sbjct: 182 NKSKTVAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRKIETVKKGDQVIANRT 241

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK++ PFKQ EFDI +G+GI F+GEL+DLGV  +++DKSGAWFS++G+RLGQGR
Sbjct: 242 RVKVVKNKVSPPFKQAEFDIAFGKGIDFYGELLDLGVTHNLIDKSGAWFSYQGERLGQGR 301

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           +N+K  L E+      +   + +   ++    + E     + D D
Sbjct: 302 DNAKTALGEHETWRSEVHRKILE---IINGGKIVEINNTEEKDTD 343


>gi|296837421|gb|ADH59569.1| DNA recombinase [Burkholderia lata]
          Length = 303

 Score =  346 bits (886), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 216/304 (71%), Positives = 265/304 (87%), Gaps = 1/304 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LLRQ 333
            +R+
Sbjct: 300 RIRE 303


>gi|308182328|ref|YP_003926455.1| recombinase A [Helicobacter pylori PeCan4]
 gi|308064513|gb|ADO06405.1| recombinase A [Helicobacter pylori PeCan4]
 gi|317008826|gb|ADU79406.1| recombinase A [Helicobacter pylori India7]
          Length = 347

 Score =  346 bits (886), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 201/343 (58%), Positives = 268/343 (78%), Gaps = 4/343 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+  A+ QI +V+GKGA+++LG +    E I+ +S+GSLGLD+ALGIGG PKGRI+
Sbjct: 6   DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDAISTGSLGLDLALGIGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  +
Sbjct: 124 EQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183

Query: 191 SRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    L+FINQ+RMKI  + +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+
Sbjct: 184 HKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF++ EFDIM+GEGIS  GE+ID GVK  IVDKSGAW S++ ++LGQG
Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           REN+K  L+E+  +A  I   ++++ G   + ++  P    ++
Sbjct: 304 RENAKALLKEDKALANEITLKIKESIG-SNEEIMPLPDEPLEE 345


>gi|329955571|ref|ZP_08296479.1| RecA protein [Bacteroides clarus YIT 12056]
 gi|328525974|gb|EGF52998.1| RecA protein [Bacteroides clarus YIT 12056]
          Length = 345

 Score =  346 bits (886), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 202/330 (61%), Positives = 268/330 (81%), Gaps = 2/330 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +    M   +K KAL+AA+ +I++ +GKG+IM++G +    E +EV+ +GS+GL++ALG+
Sbjct: 10  ENGNNMAASEKLKALQAAMDKIEKSFGKGSIMKMGDES--VEQVEVIPTGSIGLNVALGV 67

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+P+GRI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ N
Sbjct: 68  GGYPRGRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDN 127

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLISQPD GEQALEI + L+RS A+DIIV+DSVAALTP+AEIEGDMG++  G+QARLMSQ
Sbjct: 128 LLISQPDNGEQALEIAEQLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQ 187

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLTS++S+++   +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR   +IK+
Sbjct: 188 ALRKLTSAVSKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQAIKN 247

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            + + G QT+VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG +  IV KSG+WFS+
Sbjct: 248 GEEVIGKQTKVKVVKNKVAPPFRRAEFDIMFGEGISRAGEIIDLGAELGIVKKSGSWFSY 307

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLL 331
              ++ QGR+ +K  + +N E+AE +E L+
Sbjct: 308 NDTKIAQGRDAAKQVILDNPELAEELEGLI 337


>gi|325954957|ref|YP_004238617.1| protein recA [Weeksella virosa DSM 16922]
 gi|323437575|gb|ADX68039.1| Protein recA [Weeksella virosa DSM 16922]
          Length = 332

 Score =  345 bits (885), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 208/326 (63%), Positives = 266/326 (81%), Gaps = 1/326 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +  +K KAL+  L ++ + YGKG +M++G   +I + IEV+ SGSLGLDIALG+GG+P+G
Sbjct: 3   DSDNKKKALQLVLDKMDKAYGKGTVMRMGD-SAIDDKIEVIPSGSLGLDIALGVGGYPRG 61

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R++EIYGPESSGKTTL LH IA++QK GG  AF+DAEHA D  YA KLGV+++ L++SQP
Sbjct: 62  RVIEIYGPESSGKTTLTLHAIAEAQKQGGIAAFIDAEHAFDRYYAEKLGVNIEELIVSQP 121

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI D L+RSGA+DIIVIDSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT
Sbjct: 122 DNGEQALEIADNLIRSGAIDIIVIDSVAALTPKAEIEGEMGDSRMGLQARLMSQALRKLT 181

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           ++I+++KC  +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IK+ D + G
Sbjct: 182 ATINKTKCTAIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKNGDEVIG 241

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N T+VKVVKNK+A PF+Q EFDIMYGEGIS  GE++DL V+  IV KSG+W+S+   +LG
Sbjct: 242 NHTKVKVVKNKVAPPFRQAEFDIMYGEGISKVGEILDLAVEKGIVQKSGSWYSYNESKLG 301

Query: 308 QGRENSKIFLRENIEIAENIESLLRQ 333
           QGR+  K  LR+N E++E IE  + +
Sbjct: 302 QGRDAVKEVLRDNPELSEEIEEKILE 327


>gi|308183950|ref|YP_003928083.1| recombinase A [Helicobacter pylori SJM180]
 gi|308059870|gb|ADO01766.1| recombinase A [Helicobacter pylori SJM180]
          Length = 347

 Score =  345 bits (885), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 199/343 (58%), Positives = 268/343 (78%), Gaps = 4/343 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+  A+ QI +V+GKGA+++LG +    E I+ +S+GSLGLD+ALGIGG PKGRI+
Sbjct: 6   DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDAISTGSLGLDLALGIGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQP TG
Sbjct: 64  EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  +
Sbjct: 124 EEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183

Query: 191 SRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    L+FINQ+RMKI    +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+
Sbjct: 184 HKMNTTLIFINQIRMKIGMTGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF++ EFDIM+GEGIS  GE+ID GVK  IVDKSGAW S++ ++LGQG
Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           REN+K+ L+E+  +A+ I   ++++ G   + ++  P    ++
Sbjct: 304 RENAKVLLKEDKALADEITLKIKESIG-SNEEIMPLPDEPLEE 345


>gi|157273316|gb|ABV27215.1| protein RecA [Candidatus Chloracidobacterium thermophilum]
          Length = 351

 Score =  345 bits (885), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 193/324 (59%), Positives = 257/324 (79%), Gaps = 3/324 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +++KA++AA++ +++ +GKG +M+LG + ++   +  +S+  L LD A+GIGG P+GRIV
Sbjct: 7   ERNKAIDAAIASLEKQFGKGVVMRLGERQAL--EVPAISTTCLSLDAAIGIGGVPRGRIV 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPES GKTTLALH  A++Q+TGG  AF+DAEHALD  YA KLGVD+ NL +SQPD G
Sbjct: 65  EIYGPESGGKTTLALHVAAEAQRTGGNVAFIDAEHALDPGYAAKLGVDIDNLFVSQPDNG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRS A D++V+DSVAAL P+AE++GDMG++LPG+QARLMSQALRKLT+  
Sbjct: 125 EQALEIAEALVRSAAFDLVVVDSVAALVPKAELDGDMGDALPGLQARLMSQALRKLTAVA 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +R+   L+FINQ+R KIGV +GSPETTTGG ALKFY+SVR+DIRR  SIKD + + G++T
Sbjct: 185 NRTNTCLIFINQIREKIGVTWGSPETTTGGRALKFYASVRIDIRRTASIKDGEEVIGSRT 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK-GQRLGQG 309
           + K+ KNK+A PFK+VEFDI+YG+GI   G+L+DLGV   +++KSG WFS K G+RLGQG
Sbjct: 245 KAKIAKNKLAPPFKEVEFDIIYGKGICREGDLLDLGVAHKLIEKSGTWFSLKSGERLGQG 304

Query: 310 RENSKIFLRENIEIAENIESLLRQ 333
           REN+K  L  N  + E +E  LR 
Sbjct: 305 RENAKQALAANPALREQLERELRA 328


>gi|295131969|ref|YP_003582645.1| RecA [Zunongwangia profunda SM-A87]
 gi|294979984|gb|ADF50449.1| RecA [Zunongwangia profunda SM-A87]
          Length = 339

 Score =  345 bits (885), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 208/342 (60%), Positives = 269/342 (78%), Gaps = 5/342 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   KE +   K KAL+  L ++ + YGKG +M++G Q    E I  +S+GSLGLD+ALG
Sbjct: 1   MSNDKEKDA--KLKALKLTLDKMDKTYGKGTVMKMGDQA--IENIPSISTGSLGLDLALG 56

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG+P+GRI+EIYGPESSGKTTL LH IA++QK+GG  AF+DAEHA D  YA KLG+D++
Sbjct: 57  VGGYPRGRIIEIYGPESSGKTTLTLHAIAEAQKSGGIAAFIDAEHAFDRFYAEKLGIDIE 116

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL+ISQPD GEQALEITD L+RSGA+DIIVIDSVAALTP++EIEG+MG+S  G+ ARLMS
Sbjct: 117 NLIISQPDNGEQALEITDNLIRSGAIDIIVIDSVAALTPKSEIEGEMGDSKMGLHARLMS 176

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLTS+IS++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IK
Sbjct: 177 QALRKLTSTISKTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIK 236

Query: 241 D-KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           +    + GN+TRVKVVKNK+A PFK  EFDIMYGEG+S  GE+ID+GV   I+ KSG+WF
Sbjct: 237 NSSSEVMGNKTRVKVVKNKVAPPFKTAEFDIMYGEGVSKIGEIIDIGVDYEIIKKSGSWF 296

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           S++  +LGQGR+  K  L++N ++ + +E  ++    +  + 
Sbjct: 297 SYEDTKLGQGRDAVKTILKDNPDLMDELEVKIKDAIKVAKEE 338


>gi|218130550|ref|ZP_03459354.1| hypothetical protein BACEGG_02139 [Bacteroides eggerthii DSM 20697]
 gi|217986894|gb|EEC53225.1| hypothetical protein BACEGG_02139 [Bacteroides eggerthii DSM 20697]
          Length = 345

 Score =  345 bits (885), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 202/330 (61%), Positives = 268/330 (81%), Gaps = 2/330 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +    M   +K KAL+AA+ +I++ +GKG+IM++G +    E +EV+ +GS+GL++ALG+
Sbjct: 10  ENGNNMAASEKLKALQAAMDKIEKSFGKGSIMKMGDES--VEQVEVIPTGSIGLNVALGV 67

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+P+GRI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ N
Sbjct: 68  GGYPRGRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDN 127

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLISQPD GEQALEI + L+RS A+DIIV+DSVAALTP+AEIEGDMG++  G+QARLMSQ
Sbjct: 128 LLISQPDNGEQALEIAEQLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQ 187

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLTS++S+++   +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR   +IK+
Sbjct: 188 ALRKLTSAVSKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGGQAIKN 247

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            + + G QT+VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG +  IV KSG+WFS+
Sbjct: 248 GEEVIGKQTKVKVVKNKVAPPFRRAEFDIMFGEGISRAGEIIDLGAELGIVKKSGSWFSY 307

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLL 331
              ++ QGR+ +K  + +N E+AE +E L+
Sbjct: 308 NDTKIAQGRDAAKQVILDNPELAEELEGLI 337


>gi|687249|gb|AAC43379.1| RecA [Helicobacter pylori]
 gi|307636843|gb|ADN79293.1| recombinaseA [Helicobacter pylori 908]
 gi|325995432|gb|ADZ50837.1| Recombinase A [Helicobacter pylori 2018]
 gi|325997030|gb|ADZ49238.1| Recombinase A [Helicobacter pylori 2017]
          Length = 347

 Score =  345 bits (885), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 199/343 (58%), Positives = 266/343 (77%), Gaps = 4/343 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+  A+ QI +V+GKGA+++LG +    E I+ +S+GSLGLD+ALGIGG PKGRI+
Sbjct: 6   DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDAISTGSLGLDLALGIGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQP TG
Sbjct: 64  EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  +
Sbjct: 124 EEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183

Query: 191 SRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    L+FINQ+RMKI    +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+
Sbjct: 184 HKMNTTLIFINQIRMKIGMTGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF++ EFDIM+GEGIS  GE+ID GVK  IVDKSGAW S++ ++LGQG
Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           REN+K  L+E+  +A  I   ++++ G   + ++  P    ++
Sbjct: 304 RENAKALLKEDKALANEITLKIKESIG-SNEEIMPLPDEPLEE 345


>gi|217034203|ref|ZP_03439622.1| hypothetical protein HP9810_886g40 [Helicobacter pylori 98-10]
 gi|216943371|gb|EEC22830.1| hypothetical protein HP9810_886g40 [Helicobacter pylori 98-10]
 gi|261839017|gb|ACX98782.1| recombinase A [Helicobacter pylori 52]
 gi|297379378|gb|ADI34265.1| recA protein [Helicobacter pylori v225d]
 gi|308061444|gb|ADO03332.1| recombinase A [Helicobacter pylori Cuz20]
 gi|308063014|gb|ADO04901.1| recombinase A [Helicobacter pylori Sat464]
 gi|315586156|gb|ADU40537.1| recombination protein A [Helicobacter pylori 35A]
 gi|317176970|dbj|BAJ54759.1| recombinase A [Helicobacter pylori F16]
 gi|317179451|dbj|BAJ57239.1| recombinase A [Helicobacter pylori F30]
 gi|317179958|dbj|BAJ57744.1| recombinase A [Helicobacter pylori F32]
 gi|317181463|dbj|BAJ59247.1| recombinase A [Helicobacter pylori F57]
          Length = 347

 Score =  345 bits (885), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 201/343 (58%), Positives = 268/343 (78%), Gaps = 4/343 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+  A+ QI +V+GKGA+++LG +    E I+ +S+GSLGLD+ALGIGG PKGRI+
Sbjct: 6   DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDSISTGSLGLDLALGIGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  +
Sbjct: 124 EQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183

Query: 191 SRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    L+FINQ+RMKI  + +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+
Sbjct: 184 HKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF++ EFDIM+GEGIS  GE+ID GVK  IVDKSGAW S++ ++LGQG
Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           REN+K  L+E+  +A  I   ++++ G   + ++  P    ++
Sbjct: 304 RENAKALLKEDKALANEITLKIKESIG-SNEEIMPLPDEPLEE 345


>gi|17026060|dbj|BAB72097.1| recA [Campylobacter lari]
 gi|17907836|dbj|BAB79454.1| recA [Campylobacter lari]
          Length = 344

 Score =  345 bits (885), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 208/349 (59%), Positives = 272/349 (77%), Gaps = 9/349 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+AAL  + + +GKG I++LG +    E I+ + +GS+GLD+ALGIGG PKGRI+
Sbjct: 4   NKRKSLDAALKSLDKTFGKGTILRLGDKE--VEKIDSIPTGSVGLDLALGIGGVPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD  YA+ LGVD +NL ISQPD G
Sbjct: 62  EIYGPESSGKTTLTLHIIAECQKKGGVCAFIDAEHALDVRYAKNLGVDTENLYISQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSGA+D+IV+DSVAALTP+AEIEGDMG+   G+QARLMSQALR+LT  +
Sbjct: 122 EQALEIVETIARSGAIDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRELTGIV 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RM+IG+M +G+PETTTGGNALKFY+SVRLD+R+  ++K  D   GN+
Sbjct: 182 HKMNTTVIFINQIRMRIGMMGYGTPETTTGGNALKFYASVRLDVRKTATLKQNDEPIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKV KNK+A PFKQ EFD+M+GEG+S  GELID GVK  I+DKSGAWFS+K  +LGQG
Sbjct: 242 VKVKVAKNKVAPPFKQAEFDVMFGEGVSREGELIDYGVKLDIIDKSGAWFSYKASKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           REN+K FL+EN  IA+ I   ++ + G+  DS++    +  K+D + D+
Sbjct: 302 RENAKAFLKENPAIADEITQAIQNSIGI--DSMI----LGAKEDDEGDE 344


>gi|257460294|ref|ZP_05625397.1| protein RecA [Campylobacter gracilis RM3268]
 gi|257442359|gb|EEV17499.1| protein RecA [Campylobacter gracilis RM3268]
          Length = 347

 Score =  345 bits (885), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 209/353 (59%), Positives = 264/353 (74%), Gaps = 15/353 (4%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K K L+AAL  I + +GKG +++LG +    E I+ +S+GS+GLDIALGIGG PKGRI+E
Sbjct: 5   KKKTLDAALKSIDKAFGKGTLVRLGDKQ--VEPIDAISTGSVGLDIALGIGGVPKGRIIE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTL LH IA+ QK GG CAFVDAEHALD  YA  LGVD  NL +SQPD GE
Sbjct: 63  VYGPESSGKTTLTLHIIAECQKAGGICAFVDAEHALDVKYASNLGVDTDNLYVSQPDFGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL+I + L +SGA+D+IV+DSVAALTP+ EIEGDMG+   G+QARLMSQALRKL   + 
Sbjct: 123 QALDIVETLAKSGAIDLIVVDSVAALTPKNEIEGDMGDQHVGLQARLMSQALRKLAGVVH 182

Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +    ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVR+DIR++ ++K  +   GN+ 
Sbjct: 183 KMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRIDIRKIATLKQNEESIGNRA 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PFK  EFDIM+G+GIS  GELID GVK  I+DKSGAWFS+   +LGQGR
Sbjct: 243 KVKVVKNKVAPPFKIAEFDIMFGKGISKVGELIDYGVKLDIIDKSGAWFSYGDTKLGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           EN+KI+L  N  +AE I + +R+  G V  S            AD DD +N++
Sbjct: 303 ENAKIYLENNPAVAEEITAKIREQMGSVNFS------------ADADDEENLQ 343


>gi|255692793|ref|ZP_05416468.1| protein RecA [Bacteroides finegoldii DSM 17565]
 gi|260621510|gb|EEX44381.1| protein RecA [Bacteroides finegoldii DSM 17565]
          Length = 344

 Score =  345 bits (885), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 199/334 (59%), Positives = 265/334 (79%), Gaps = 2/334 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +   +M   +K KAL+AA+ +I++ +GKG+IM++G      E +EV+ +GS+ L++ALG+
Sbjct: 10  ETDNKMASSEKLKALQAAMEKIEKSFGKGSIMKMGDDS--VEQVEVIPTGSIALNVALGV 67

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+P+GRI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGV++ +
Sbjct: 68  GGYPRGRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYASKLGVNIDD 127

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L ISQPD GEQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++  G+QARLMSQ
Sbjct: 128 LYISQPDNGEQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQ 187

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT+++S+++   +FINQ+R KIGVMFGSPETTTGGNALKFY+SVRLDIR    IKD
Sbjct: 188 ALRKLTAAVSKTRTTCIFINQLREKIGVMFGSPETTTGGNALKFYASVRLDIRPGQPIKD 247

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            + I G  T+VKVVKNK+A PF++ EFDIM+GEGIS  GE++DLG    I+ KSG+W+S+
Sbjct: 248 GEEILGKLTKVKVVKNKVAPPFRRAEFDIMFGEGISHSGEIVDLGADLGIIKKSGSWYSY 307

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
              +LGQGR+ +K  + +N E+AE +E L+ +  
Sbjct: 308 NDTKLGQGRDAAKQCIADNPELAEELEGLIFEEL 341


>gi|268680852|ref|YP_003305283.1| recA protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268618883|gb|ACZ13248.1| recA protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 347

 Score =  345 bits (885), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 201/346 (58%), Positives = 270/346 (78%), Gaps = 5/346 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALE A+ QI + +GKGA+++LG +  + E I  +S+GS+GLD+ALGIGG P+GRI+
Sbjct: 6   NKRKALELAIKQIDKAFGKGALVRLGDK--VVEPIAAISTGSIGLDLALGIGGIPQGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+L  IA++Q  G  CAFVDAEHALD  YA  LGVD++NLL+SQPD G
Sbjct: 64  EIYGPESSGKTTLSLQIIAEAQAKGSICAFVDAEHALDVKYAGNLGVDIENLLVSQPDFG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL+I + L RSGAVD+IV+DSVAALTP++EIEGDMG++  G+QARLMSQALRKLT+ +
Sbjct: 124 EQALDIVETLARSGAVDVIVVDSVAALTPKSEIEGDMGDTHVGLQARLMSQALRKLTAVV 183

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIG M +GSPETTTGGNALKFY+SVR+D+R++ ++K  +   GN+
Sbjct: 184 HKMNTTVIFINQIRMKIGTMGYGSPETTTGGNALKFYASVRIDVRKIATLKQGEEQIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KV+KNK+A PF+Q EFDIM+GEGIS  GE++D GVK  I+DKSGAWFS+   +LGQG
Sbjct: 244 VKAKVIKNKVAPPFRQAEFDIMFGEGISKEGEIVDYGVKLDIIDKSGAWFSYNETKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           REN K FL+EN  +A  IE  ++Q   +  ++++    ++   + +
Sbjct: 304 RENVKAFLKENKALALEIEEKIKQA--ISGNAMVMACGVDDIKEDE 347


>gi|296837383|gb|ADH59550.1| DNA recombinase [Burkholderia contaminans]
 gi|296837387|gb|ADH59552.1| DNA recombinase [Burkholderia contaminans]
 gi|296837409|gb|ADH59563.1| DNA recombinase [Burkholderia contaminans]
          Length = 303

 Score =  345 bits (885), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 215/304 (70%), Positives = 265/304 (87%), Gaps = 1/304 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+
Sbjct: 1   SIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IV
Sbjct: 60  LQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM
Sbjct: 120 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 179

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI
Sbjct: 180 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 239

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
           +YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ 
Sbjct: 240 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 299

Query: 331 LRQN 334
           +R++
Sbjct: 300 IRES 303


>gi|317010432|gb|ADU84179.1| recombinase A [Helicobacter pylori SouthAfrica7]
          Length = 347

 Score =  345 bits (885), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 199/343 (58%), Positives = 266/343 (77%), Gaps = 4/343 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+  A+ QI +V+GKGA+++LG +    E I+ +S+GSLGLD+ALGIGG PKGRI+
Sbjct: 6   DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDSISTGSLGLDLALGIGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQP TG
Sbjct: 64  EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  +
Sbjct: 124 EEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183

Query: 191 SRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    L+FINQ+RMKI    +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+
Sbjct: 184 HKMNTTLIFINQIRMKIGMTGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF++ EFDIM+GEGIS  GE+ID GVK  IVDKSGAW S++ ++LGQG
Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           REN+K  L+E+  +A  I   ++++ G   + ++  P    ++
Sbjct: 304 RENAKALLKEDKALANEITLKIKESIG-SNEEIMPLPDEPLEE 345


>gi|210134353|ref|YP_002300792.1| recombinase A [Helicobacter pylori P12]
 gi|226723630|sp|B6JPQ1|RECA_HELP2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|210132321|gb|ACJ07312.1| recombinase RecA [Helicobacter pylori P12]
          Length = 347

 Score =  345 bits (885), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 200/343 (58%), Positives = 268/343 (78%), Gaps = 4/343 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+  A+ QI +V+GKGA+++LG +    E I+ +S+GSLGLD+ALGIGG PKGRI+
Sbjct: 6   DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDAISTGSLGLDLALGIGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQP TG
Sbjct: 64  EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  +
Sbjct: 124 EEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183

Query: 191 SRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    L+FINQ+RMKI  + +GSPETTTGGNALKFY+SVR+DIRR+ S+K  +   GN+
Sbjct: 184 HKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIASLKQNEQHIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF++ EFDIM+GEGIS  GE+ID GVK  IVDKSGAW S++ ++LGQG
Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           REN+K  L+E+  +A+ I   ++++ G   + ++  P    ++
Sbjct: 304 RENAKALLKEDKALADEITLKIKESIG-SNEEIMPLPDEPLEE 345


>gi|222823194|ref|YP_002574767.1| recombinase A [Campylobacter lari RM2100]
 gi|254790425|sp|B9KEN1|RECA_CAMLR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|222538415|gb|ACM63516.1| recombinase A [Campylobacter lari RM2100]
          Length = 344

 Score =  345 bits (884), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 210/349 (60%), Positives = 272/349 (77%), Gaps = 9/349 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+AAL  + + +GKG I++LG +    E I+ + +GS+GLD+ALGIGG PKGRI+
Sbjct: 4   NKRKSLDAALKSLDKTFGKGTILRLGDKE--VEKIDSIPTGSVGLDLALGIGGVPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD  YA+ LGVD +NL ISQPD G
Sbjct: 62  EIYGPESSGKTTLTLHIIAECQKKGGVCAFIDAEHALDVKYAKNLGVDTENLYISQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSGA+D+IV+DSVAALTP+AEIEGDMG+   G+QARLMSQALRKLT  +
Sbjct: 122 EQALEIVETIARSGAIDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRKLTGIV 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIG+M +G+PETTTGGNALKFYSSVRLD+R+  ++K  D   GN+
Sbjct: 182 HKMNTTVIFINQIRMKIGMMGYGTPETTTGGNALKFYSSVRLDVRKTATLKQNDEPIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKV KNK+A PFKQ EFD+M+GEG+S  GELID GVK  I+DKSGAWFS+K  +LGQG
Sbjct: 242 VKVKVAKNKVAPPFKQAEFDVMFGEGVSREGELIDYGVKLDIIDKSGAWFSYKASKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           REN+K FL+EN  IA+ I   ++ + G+  DS++    +  K+D + ++
Sbjct: 302 RENAKAFLKENPAIADEITQAIQNSIGI--DSMI----LGAKEDDEGEE 344


>gi|149394982|gb|ABR27345.1| RecA [Burkholderia sp. ESR92]
          Length = 305

 Score =  345 bits (884), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 215/305 (70%), Positives = 265/305 (86%), Gaps = 1/305 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+
Sbjct: 1   SIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IV
Sbjct: 60  LQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM
Sbjct: 120 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 179

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI
Sbjct: 180 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 239

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
           +YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ 
Sbjct: 240 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 299

Query: 331 LRQNA 335
           +R++ 
Sbjct: 300 IRESL 304


>gi|70904913|gb|AAZ14034.1| RecA [Burkholderia ambifaria]
          Length = 300

 Score =  345 bits (884), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 216/301 (71%), Positives = 264/301 (87%), Gaps = 1/301 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           +A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  VAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI
Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  
Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  I
Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299

Query: 328 E 328
           E
Sbjct: 300 E 300


>gi|17230764|ref|NP_487312.1| recombinase A [Nostoc sp. PCC 7120]
 gi|20139390|sp|P58552|RECA_NOSS1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|17132367|dbj|BAB74971.1| recombination protein [Nostoc sp. PCC 7120]
          Length = 357

 Score =  345 bits (884), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 196/324 (60%), Positives = 250/324 (77%), Gaps = 3/324 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL   L+QI+R +GKGAIM+LG    +   +E +S+G+L LD+ALG GG PKGR++E
Sbjct: 10  KQKALTMVLNQIERSFGKGAIMRLGDATRMR--VETISTGALTLDLALG-GGLPKGRVIE 66

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH IA+ QK GG  AFVDAEHALD  YA  LGVD++NLL+SQPDTGE
Sbjct: 67  IYGPESSGKTTVALHAIAEVQKEGGIAAFVDAEHALDPTYASALGVDIQNLLVSQPDTGE 126

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
            ALEI D LVRS AVDI+VIDSVAAL PRAEIEGDMG++  G+QARLMSQALRK+T +I 
Sbjct: 127 SALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKITGNIG 186

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S C ++FINQ+R KIGV +GSPETTTGGNALKFY+SVRLDIRR+ ++K      GN+ +
Sbjct: 187 KSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGTDEFGNRVK 246

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV KNK+A PF+  EFDI++G+G+S  G L+DL  +  I+ + GAW+S+ G  + QGR+
Sbjct: 247 VKVAKNKVAPPFRIAEFDIIFGKGVSTLGCLVDLAEETGILIRKGAWYSYNGDNISQGRD 306

Query: 312 NSKIFLRENIEIAENIESLLRQNA 335
           N+  +L E  E +E I+  +R+  
Sbjct: 307 NAIKYLEEKPEFSEQIKQQVREKL 330


>gi|188526958|ref|YP_001909645.1| recombinase A [Helicobacter pylori Shi470]
 gi|238691885|sp|B2URY3|RECA_HELPS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|188143198|gb|ACD47615.1| recombinase A [Helicobacter pylori Shi470]
          Length = 347

 Score =  345 bits (884), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 200/343 (58%), Positives = 268/343 (78%), Gaps = 4/343 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+  A+ QI +++GKGA+++LG +    E I+ +S+GSLGLD+ALGIGG PKGRI+
Sbjct: 6   DKQKAISLAIKQIDKIFGKGALVRLGDKQ--VEKIDSISTGSLGLDLALGIGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  +
Sbjct: 124 EQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183

Query: 191 SRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    L+FINQ+RMKI  + +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+
Sbjct: 184 HKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF++ EFDIM+GEGIS  GE+ID GVK  IVDKSGAW S++ ++LGQG
Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           REN+K  L+E+  +A  I   ++++ G   + ++  P    ++
Sbjct: 304 RENAKALLKEDKALANEITLKIKESIG-SNEEIMPLPDEPLEE 345


>gi|149394986|gb|ABR27347.1| RecA [Burkholderia cenocepacia]
          Length = 304

 Score =  345 bits (884), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 216/305 (70%), Positives = 265/305 (86%), Gaps = 1/305 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ 
Sbjct: 1   IMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEL 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVI
Sbjct: 60  QKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVI 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMF
Sbjct: 120 DSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMF 179

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+
Sbjct: 180 GNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDIL 239

Query: 272 YGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLL 331
           YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ +
Sbjct: 240 YGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRI 299

Query: 332 RQNAG 336
           R++ G
Sbjct: 300 RESLG 304


>gi|57505301|ref|ZP_00371230.1| recA protein [Campylobacter upsaliensis RM3195]
 gi|57016437|gb|EAL53222.1| recA protein [Campylobacter upsaliensis RM3195]
          Length = 342

 Score =  345 bits (884), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 207/343 (60%), Positives = 270/343 (78%), Gaps = 5/343 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+AAL  + + +GKG I++LG +    E I+ + +GS+GLD+ALGIGG PKGRI+
Sbjct: 4   NKKKSLDAALKSLDKAFGKGTILRLGDKE--IEQIDSIGTGSVGLDLALGIGGVPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD  YA+ LGVD  NL ISQPD G
Sbjct: 62  EIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLGVDTDNLYISQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSGA+D+IV+DSVAALTP+AEI+GDMG+   G+QARLMSQALRKLT  +
Sbjct: 122 EQALEIVETIARSGAIDLIVVDSVAALTPKAEIDGDMGDQHVGLQARLMSQALRKLTGIV 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R+V ++K  +   GN+
Sbjct: 182 HKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQNEEPIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PF+  EFD+MYGEG+S  GELID GVK  I+DKSGAWFS+K ++LGQG
Sbjct: 242 VKVKVVKNKVAPPFRVAEFDVMYGEGLSREGELIDYGVKLDIIDKSGAWFSYKDKKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           RENSK FLREN E+A+ I   ++ + G+  +S++ + +   ++
Sbjct: 302 RENSKAFLRENPELADEITKAIQNSMGI--ESVMSDNSEEEEE 342


>gi|88608011|ref|YP_506414.1| recA protein [Neorickettsia sennetsu str. Miyayama]
 gi|88600180|gb|ABD45648.1| recA protein [Neorickettsia sennetsu str. Miyayama]
          Length = 327

 Score =  345 bits (884), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 212/330 (64%), Positives = 278/330 (84%), Gaps = 4/330 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +++  AL+  + QI++++GKG+IM    + +    +E +S+GS+GLD ALG GG PKGRI
Sbjct: 1   MNREDALKGVVVQIEKMFGKGSIMTFSQEPA---SVECISTGSIGLDSALG-GGIPKGRI 56

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD +YAR+LGV ++ LLISQPDT
Sbjct: 57  IEIFGPESSGKTTLTLHIIAEAQKNGGTCAFIDAEHALDPVYARRLGVKIEELLISQPDT 116

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D L++SGAVD+IV+DSVAALTP+AEIEG+MG+   G+QARL+SQALRK+T+S
Sbjct: 117 GEQALEIVDSLIKSGAVDVIVVDSVAALTPKAEIEGEMGDLHVGLQARLLSQALRKITAS 176

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +SRS C++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVR+DIR++GSIKDK+ + GNQ
Sbjct: 177 VSRSNCVVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRIDIRKIGSIKDKEDVVGNQ 236

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK+A PFKQ EFDI+Y EGIS  GE+I++GV+  I++K+G+++S+   +LGQG
Sbjct: 237 TRVKVVKNKVAPPFKQAEFDIIYTEGISKLGEIIEIGVRNKIIEKAGSYYSYGDVKLGQG 296

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +EN K FL+EN E+A  +E  +R +  L+A
Sbjct: 297 KENVKQFLKENKELAAELERKVRDSMLLIA 326


>gi|197124077|ref|YP_002136028.1| recA protein [Anaeromyxobacter sp. K]
 gi|196173926|gb|ACG74899.1| recA protein [Anaeromyxobacter sp. K]
          Length = 343

 Score =  345 bits (884), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 200/342 (58%), Positives = 266/342 (77%), Gaps = 1/342 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
            + +++KAL  A++ I++ +GKG+IM+L         + VV SGS+GLD+ALG+GG P+G
Sbjct: 3   KLAERAKALGQAVATIEKAFGKGSIMRLAESAEPA-PVPVVPSGSIGLDLALGVGGLPRG 61

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R+VEI+GPESSGKTTLALH IA++QK GG  AF+DAEHALD  YARKLGV+L  LL+SQP
Sbjct: 62  RVVEIFGPESSGKTTLALHAIAEAQKAGGVAAFIDAEHALDVGYARKLGVNLAELLVSQP 121

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI + LVRSGA D+IV+DSVAAL P+AEIEG+MG++  G+QARLMSQALRKLT
Sbjct: 122 DTGEQALEIAEQLVRSGACDVIVVDSVAALVPKAEIEGEMGDAHMGVQARLMSQALRKLT 181

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
             +SR++ ++VFINQ+RMKIGV+FG+PETTTGG+ALKFY+SVR+DIRR+G +K+ D++ G
Sbjct: 182 GVVSRNQTLVVFINQIRMKIGVVFGNPETTTGGHALKFYASVRMDIRRIGQVKEGDAVVG 241

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           ++TRVKVVKNK+A PF++ EFDI YG G+  FGE +DLGV+   V+KSGA FS  G+R+G
Sbjct: 242 SRTRVKVVKNKVAPPFREAEFDIRYGVGVDRFGEAVDLGVERGAVEKSGAHFSMDGERIG 301

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
           QGRE +  +LR N    E +   ++        +++   A  
Sbjct: 302 QGRERAAEWLRANPAAFERLVERIKAPGASTPLAVVAAEAAG 343


>gi|47571292|gb|AAT35803.1| RecA [Mycobacterium shimoidei]
          Length = 304

 Score =  344 bits (883), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 193/302 (63%), Positives = 251/302 (83%), Gaps = 2/302 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KA+E A++QI++ +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 5   PDREKAIELAIAQIEKNHGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDT
Sbjct: 63  VEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 123 GEQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+
Sbjct: 183 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNR 242

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV    + KSG+WF+++G++LGQG
Sbjct: 243 TRVKVVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVDQGFIRKSGSWFTYEGEQLGQG 302

Query: 310 RE 311
           +E
Sbjct: 303 KE 304


>gi|20178053|sp|Q93R37|RECA_CAMLA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|15128569|dbj|BAB62716.1| recA [Campylobacter lari]
          Length = 344

 Score =  344 bits (883), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 210/349 (60%), Positives = 272/349 (77%), Gaps = 9/349 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+AAL  + + +GKG I++LG +    E I+ + +GS+GLD+ALGIGG PKGRI+
Sbjct: 4   NKRKSLDAALKSLDKTFGKGTILRLGDKE--VEKIDSIPTGSVGLDLALGIGGVPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD  YA+ LGVD +NL ISQPD G
Sbjct: 62  EIYGPESSGKTTLTLHIIAECQKKGGVCAFIDAEHALDVKYAKDLGVDTENLYISQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSGA+D+IV+DSVAALTP+AEIEGDMG+   G+QARLMSQALR+LT  +
Sbjct: 122 EQALEIVETIARSGAIDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRELTGIV 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIG+M +G+PETTTGGNALKFYSSVRLD+R+  ++K  D   GN+
Sbjct: 182 HKMNTTVIFINQIRMKIGMMGYGTPETTTGGNALKFYSSVRLDVRKTATLKQNDEPIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKV KNK+A PFKQ EFD+M+GEG+S  GELID GVK  I+DKSGAWFS+K  +LGQG
Sbjct: 242 VKVKVAKNKVAPPFKQAEFDVMFGEGVSREGELIDYGVKLDIIDKSGAWFSYKASKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           REN+K FL+EN  IA+ I   ++ + G+  DS++    +  K+D + D+
Sbjct: 302 RENAKAFLKENPAIADEITQAIQNSIGI--DSMI----LGAKEDDEGDE 344


>gi|148925809|ref|ZP_01809497.1| recA protein [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145845819|gb|EDK22910.1| recA protein [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 343

 Score =  344 bits (883), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 209/349 (59%), Positives = 272/349 (77%), Gaps = 10/349 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+AAL  + + +GKG I++LG +    E I+ + +GS+GLD+ALGIGG PKGRI+
Sbjct: 4   NKRKSLDAALKSLDKTFGKGTILRLGDKE--VEQIDSIGTGSVGLDLALGIGGVPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD  YA+ LGV+  +L +SQPD G
Sbjct: 62  EIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLGVNTDDLYVSQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSGAVD+IV+DSVAALTP+AEIEGDMG+   G+QARLMSQALRKLT  +
Sbjct: 122 EQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRKLTGIV 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R+V ++K  +   GN+
Sbjct: 182 HKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQNEEPIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PF+Q EFD+M+GEG+S  GELID GVK  IVDKSGAWFS+K ++LGQG
Sbjct: 242 VKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           RENSK FL+EN EIA+ I   ++ + G+       E  I++ +D + ++
Sbjct: 302 RENSKAFLKENPEIADEITKAIQNSMGI-------EGMISSSEDDEGEE 343


>gi|120437570|ref|YP_863256.1| RecA protein [Gramella forsetii KT0803]
 gi|117579720|emb|CAL68189.1| RecA protein [Gramella forsetii KT0803]
          Length = 337

 Score =  344 bits (883), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 210/335 (62%), Positives = 267/335 (79%), Gaps = 5/335 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   KE +   K KAL+  L ++ + YGKG +M++  Q  +   ++ +S+GSLGLD+ALG
Sbjct: 1   MSNDKEKDA--KLKALKLTLDKMDKTYGKGTVMKMSDQ--VVVDVDAISTGSLGLDLALG 56

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG+P+GR++EIYGPESSGKTTL LH IA++QK GG  AF+DAEHA D  YA KL VD+ 
Sbjct: 57  VGGYPRGRVIEIYGPESSGKTTLTLHAIAEAQKKGGIAAFIDAEHAFDRFYAEKLDVDID 116

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL+ISQPD GEQALEITD L+RSGA+DIIVIDSVAALTP++EIEG+MG+S  G+ ARLMS
Sbjct: 117 NLIISQPDNGEQALEITDNLIRSGAIDIIVIDSVAALTPKSEIEGEMGDSKMGLHARLMS 176

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLTSSIS++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IK
Sbjct: 177 QALRKLTSSISKTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIK 236

Query: 241 DK-DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           D  +++ GN+TRVKVVKNK+A PFK  EFDIMYGEGIS  GE+ID+GV   IV KSG+WF
Sbjct: 237 DSANNVMGNKTRVKVVKNKVAPPFKMAEFDIMYGEGISKIGEIIDIGVDYEIVKKSGSWF 296

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
           S++  +LGQGR+  KI L++N ++ E +E  ++  
Sbjct: 297 SYEDTKLGQGRDAVKILLKDNPDLMEELEEKIKNA 331


>gi|57504667|ref|ZP_00370745.1| recA protein [Campylobacter coli RM2228]
 gi|305432629|ref|ZP_07401790.1| recombination protein A [Campylobacter coli JV20]
 gi|57019436|gb|EAL56131.1| recA protein [Campylobacter coli RM2228]
 gi|304444340|gb|EFM36992.1| recombination protein A [Campylobacter coli JV20]
          Length = 343

 Score =  344 bits (883), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 208/328 (63%), Positives = 263/328 (80%), Gaps = 3/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+AAL  + + +GKG I++LG +    E I+ + +GS+GLD+ALGIGG PKGRI+
Sbjct: 4   NKKKSLDAALKSLDKAFGKGTILRLGDKE--VEQIDSIGTGSVGLDLALGIGGIPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD  YA+ LGVD  NL ISQPD G
Sbjct: 62  EIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLGVDTDNLYISQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSGA+D+IV+DSVAALTP+AEIEGDMG+   G+QARLMSQALRKLT  +
Sbjct: 122 EQALEIVETIARSGAIDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRKLTGIV 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R+V ++K  +   GN+
Sbjct: 182 HKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQNEEPIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PF+Q EFD+M+GEG+S  GELID GVK  IVDKSGAWFS+K ++LGQG
Sbjct: 242 VKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           RENSK FL+EN EIA+ I   ++ + G+
Sbjct: 302 RENSKAFLKENPEIADEITKEIQNSMGI 329


>gi|296837371|gb|ADH59544.1| DNA recombinase [Burkholderia contaminans]
          Length = 302

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 215/303 (70%), Positives = 264/303 (87%), Gaps = 1/303 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+
Sbjct: 1   SIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IV
Sbjct: 60  LQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM
Sbjct: 120 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 179

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI
Sbjct: 180 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 239

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
           +YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ 
Sbjct: 240 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 299

Query: 331 LRQ 333
           +R+
Sbjct: 300 IRE 302


>gi|17225215|gb|AAL37303.1|AF323925_1 recombinase RecA [Helicobacter pylori]
 gi|17225217|gb|AAL37304.1|AF323926_1 recombinase RecA [Helicobacter pylori]
          Length = 347

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 200/343 (58%), Positives = 269/343 (78%), Gaps = 4/343 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+  A+ QI +V+GKGA+++LG +    E I+ +S+GSLGLD+ALGIGG PKGRI+
Sbjct: 6   DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDAISTGSLGLDLALGIGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+LH IA+ QK GG CAF+DA+HALD  YA++LGVD +NLL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAKHALDVHYAKRLGVDTENLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  +
Sbjct: 124 EQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183

Query: 191 SRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    L+FINQ+RMKI  + +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+
Sbjct: 184 HKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF++ EFDIM+GEGIS  GE+ID GVK  IVDKSGAW S++ ++LGQG
Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           REN+K  L+E+  +A+ I   ++++ G   + ++  P    ++
Sbjct: 304 RENAKALLKEDKALADEITLKIKESIG-SNEEIMPLPDEPLEE 345


>gi|86131029|ref|ZP_01049628.1| protein RecA [Dokdonia donghaensis MED134]
 gi|85818440|gb|EAQ39600.1| protein RecA [Dokdonia donghaensis MED134]
          Length = 335

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 202/332 (60%), Positives = 263/332 (79%), Gaps = 7/332 (2%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   K+     K KAL+  L ++ + YGKGA+M++G Q  +   +E + +GSLGLD+ALG
Sbjct: 1   MSSEKDA----KLKALKLTLDKLDKTYGKGAVMKMGDQAIV--DVESIPTGSLGLDVALG 54

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG+P+GR++EIYGPESSGKTTL LH IA++QK GG  AF+DAEHA D  YA KL VD+ 
Sbjct: 55  VGGYPRGRVIEIYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAEHAFDRFYAEKLDVDID 114

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL+ISQPD GEQALEI D L+RSGA+DI+VIDSVAALTP++EIEG+MG+S  G+ ARLMS
Sbjct: 115 NLIISQPDNGEQALEIADNLIRSGAIDIVVIDSVAALTPKSEIEGEMGDSKMGLHARLMS 174

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT SIS++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IK
Sbjct: 175 QALRKLTGSISKTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIK 234

Query: 241 DKD-SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           D + ++ GN+TRVK+VKNK+A PF+  EFDIMYGEG+S  GE+ID+GV   I+ K+G+WF
Sbjct: 235 DSNANVMGNKTRVKIVKNKVAPPFRMAEFDIMYGEGVSKVGEIIDIGVNYEIIKKAGSWF 294

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLL 331
           S++  +LGQGR+  K  L +N ++ E +E+ +
Sbjct: 295 SYQDTKLGQGRDAVKALLLDNPDLMEELETKI 326


>gi|225012500|ref|ZP_03702936.1| recA protein [Flavobacteria bacterium MS024-2A]
 gi|225003477|gb|EEG41451.1| recA protein [Flavobacteria bacterium MS024-2A]
          Length = 335

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 204/321 (63%), Positives = 257/321 (80%), Gaps = 3/321 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+  L ++ + YGKGA+M+LG +  +   +E +SSGS+GLDIALG+GG+P+GR++E
Sbjct: 8   KQKALQLTLDKLDKTYGKGAVMRLGDEAIV--EVESISSGSIGLDIALGVGGYPRGRVIE 65

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA+ QK+GG  AF+DAEHA D  YA KLGVD+  L+ISQPD GE
Sbjct: 66  IYGPESSGKTTLTLHAIAECQKSGGIAAFIDAEHAFDRFYAEKLGVDVGELIISQPDHGE 125

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RSGA+DI+VIDSVAALTP++EIEG+MG+S  G+ ARLMSQALRKLT SIS
Sbjct: 126 QALEIADNLIRSGAIDIVVIDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTGSIS 185

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSITGNQT 250
           ++ C + FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IK+ +  + GN+T
Sbjct: 186 KTNCTVFFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKNTESEVLGNKT 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+  EFDIMYGEGIS  GE+IDLGV   I+ KSG+WFS+   ++GQGR
Sbjct: 246 RVKVVKNKVAPPFRTTEFDIMYGEGISKIGEIIDLGVNYEIIKKSGSWFSYGDTKIGQGR 305

Query: 311 ENSKIFLRENIEIAENIESLL 331
           +  K  L +N E+ + +E  +
Sbjct: 306 DAVKTLLEDNPELMDELEKKI 326


>gi|163781649|ref|ZP_02176649.1| recombinase A [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882869|gb|EDP76373.1| recombinase A [Hydrogenivirga sp. 128-5-R1-1]
          Length = 345

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 191/339 (56%), Positives = 255/339 (75%), Gaps = 2/339 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E  + +K KALEA+++ I++ +GKG+IM L    +    ++V+ +GSL LDIA GIGG P
Sbjct: 7   EKVLNEKKKALEASIANIEKRFGKGSIMPL--HAAETVKVDVIPTGSLALDIATGIGGIP 64

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+E++G ESSGKTTLALH IAQ+QK GG   F+DAEHALD  YA+ LGVD++NL IS
Sbjct: 65  RGRIIEVFGVESSGKTTLALHVIAQAQKKGGVAVFIDAEHALDPKYAKNLGVDVENLYIS 124

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI + L+ SGAVD+IV+DSVAAL PR E+EG+MGE+  G QARLMSQALRK
Sbjct: 125 QPDYGEQALEIAESLINSGAVDVIVVDSVAALVPRDELEGEMGEAQVGKQARLMSQALRK 184

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           L   + +S   L+FINQ+R KIGVMFG+PETT GG ALKF+S +RL++RR+G IK+ +  
Sbjct: 185 LKGIVHKSNTSLIFINQIREKIGVMFGNPETTPGGRALKFFSDMRLEVRRIGDIKEGNEK 244

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            G + RV+VVKNK+A PF++ EFD++YGEGI    +LID+     ++ KSG+W+S+  QR
Sbjct: 245 VGYRVRVRVVKNKLAPPFQEAEFDMIYGEGICKLCDLIDVATDKGVLTKSGSWYSYGDQR 304

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
           +GQG+E  K +L+EN E+A  IE  +R+ AGLV     +
Sbjct: 305 IGQGKEQVKRYLKENPELAREIEEKVREVAGLVTADTEE 343


>gi|325145691|gb|ADY86115.1| RecA [Burkholderia sp. V-16.5]
          Length = 337

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 206/338 (60%), Positives = 255/338 (75%), Gaps = 3/338 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKAL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEI
Sbjct: 1   SKALAAALAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSG++D+ VIDSVAAL P+AEIE                            
Sbjct: 120 ALEITDALVRSGSIDMXVIDSVAALVPKAEIEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 179

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
                   NQ+RMKIGVMFG PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRV
Sbjct: 180 XXXXXXXXNQIRMKIGVMFGXPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N
Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299

Query: 313 SKIFLRENIEIAENIESLLRQNAGLVA--DSLLQEPAI 348
           ++ FLREN EIA  IE+ +R++ G+VA  D ++ E   
Sbjct: 300 AREFLRENPEIAREIENRIRESLGVVAMPDGVVDEAEA 337


>gi|15607092|ref|NP_214474.1| recombinase A [Aquifex aeolicus VF5]
 gi|6225921|sp|O67905|RECA_AQUAE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|2984348|gb|AAC07868.1| recombination protein RecA [Aquifex aeolicus VF5]
          Length = 345

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 190/344 (55%), Positives = 255/344 (74%), Gaps = 2/344 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N+ +K KALE ALS I++ +GKGA+M L S   +   +E + +GSL LDIA G+GG PKG
Sbjct: 4   NLSEKKKALEVALSNIEKRFGKGAVMPLKSVEKV--QVETIPTGSLALDIATGVGGIPKG 61

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI EI+G ESSGKTTLALH IA++QK GG   F+DAEHALD  YA+KLGVD++NL ISQP
Sbjct: 62  RITEIFGVESSGKTTLALHVIAEAQKRGGVAVFIDAEHALDPKYAKKLGVDVENLYISQP 121

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI + L+ SGAVD+IV+DSVAAL P+ E+EG+MGE+  G QARLMSQALRKL 
Sbjct: 122 DYGEQALEIAESLINSGAVDVIVVDSVAALVPKDELEGEMGEAQVGKQARLMSQALRKLK 181

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++ +S   L+FINQ+R KIGVMFG+PETT GG ALKF+S +RL++RR+G +K+     G
Sbjct: 182 GAVHKSNTALIFINQIREKIGVMFGNPETTPGGRALKFFSDMRLEVRRLGDVKEGGEKKG 241

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
            + +V+VVKNK+A PF++ EFDI+YGEGI    +LI++     I  KSG+W+S+  +RLG
Sbjct: 242 YRVKVRVVKNKLAPPFQEAEFDIIYGEGICKLCDLIEVATNLGIFTKSGSWYSYGDKRLG 301

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           QG+E  K +L+E+ E+ + I+  +R+ AGL   ++ +      K
Sbjct: 302 QGKEQVKKYLQEHPELIDEIDQKVREAAGLAGSNIEESTGEEGK 345


>gi|313887018|ref|ZP_07820718.1| RecA protein [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923544|gb|EFR34353.1| RecA protein [Porphyromonas asaccharolytica PR426713P-I]
 gi|332176934|gb|AEE12624.1| Protein recA [Porphyromonas asaccharolytica DSM 20707]
          Length = 378

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 186/358 (51%), Positives = 250/358 (69%), Gaps = 5/358 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +   K KALE  + +IQ+ +GKGAIM +       E + V+ SGSL LDIALG+GG+P+G
Sbjct: 16  DTAAKMKALETTMGRIQKQFGKGAIMNMADDA--VEDVSVIPSGSLTLDIALGVGGYPRG 73

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EI+GPESSGKTTLA+H IA++QK GG  A +DAEHA D  YA+ LGVD+  L ISQP
Sbjct: 74  RIIEIFGPESSGKTTLAIHAIAEAQKLGGIAAIIDAEHAFDPTYAQALGVDISRLWISQP 133

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQAL+I + L+RS AVDI+V+DSVAALTP+AEIEG+MG++  G+ ARLMS+A+RK+T
Sbjct: 134 DDGEQALDIAEQLIRSSAVDILVVDSVAALTPKAEIEGEMGDTQVGLHARLMSRAMRKIT 193

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSP---ETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           +++SRSK   +FINQ+RMKI   +      E TTGGNALKFYSSVRLDIR    IK  D 
Sbjct: 194 AAVSRSKTCCIFINQLRMKISSGYSPTGPSEVTTGGNALKFYSSVRLDIRAYKQIKKGDD 253

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + G  T V+VVKNK+A PF++ EFDI++G+GI+  GE+ID      I+ KSG+W+S++G 
Sbjct: 254 VVGKVTSVRVVKNKVAPPFRRAEFDILFGQGINRVGEIIDAATDMGILKKSGSWYSYQGN 313

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
            +GQGR+  K  L +N E+A+ +   +           L +     ++  D D TD +
Sbjct: 314 NIGQGRDAVKELLDDNPELADEVAQQVMDQLAHEGKLHLSQETSEGEEGEDLDTTDQL 371


>gi|224551671|gb|ACN54235.1| RecA [Burkholderia sp. FC61]
          Length = 301

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 214/300 (71%), Positives = 262/300 (87%), Gaps = 1/300 (0%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           + +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL 
Sbjct: 2   KQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLT 60

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG
Sbjct: 61  LQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSG 120

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           ++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+R
Sbjct: 121 SIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIR 180

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF+
Sbjct: 181 MKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFR 240

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           +  FDI+Y EGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA
Sbjct: 241 EAIFDILYXEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIA 300


>gi|315639267|ref|ZP_07894429.1| recombination protein A [Campylobacter upsaliensis JV21]
 gi|315480593|gb|EFU71235.1| recombination protein A [Campylobacter upsaliensis JV21]
          Length = 342

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 206/343 (60%), Positives = 269/343 (78%), Gaps = 5/343 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+AAL  + + +GKG I++LG +    E I+ + +GS+GLD+ALGIGG PKGRI+
Sbjct: 4   NKKKSLDAALKSLDKAFGKGTILRLGDKE--IEQIDSIGTGSVGLDLALGIGGVPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD  YA+ LGVD  NL ISQPD G
Sbjct: 62  EIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLGVDTDNLYISQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSGA+D+IV+DSVAALTP+AEI+GDMG+   G+QARLMSQALRKLT  +
Sbjct: 122 EQALEIVETIARSGAIDLIVVDSVAALTPKAEIDGDMGDQHVGLQARLMSQALRKLTGIV 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R+V ++K  +   GN+
Sbjct: 182 HKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQNEEPIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PF+  EFD+MYGEG+S  GELID GVK  I+DKSGAWFS+K ++LGQG
Sbjct: 242 VKVKVVKNKVAPPFRVAEFDVMYGEGLSREGELIDYGVKLDIIDKSGAWFSYKDKKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           RENSK FLREN E+A+ I   ++ + G+  + ++ + +   ++
Sbjct: 302 RENSKAFLRENPELADEITKAIQNSMGI--EGVMSDNSEEEEE 342


>gi|220903572|ref|YP_002478884.1| recA protein [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|254790431|sp|B8J369|RECA_DESDA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|219867871|gb|ACL48206.1| recA protein [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 359

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 206/361 (57%), Positives = 272/361 (75%), Gaps = 6/361 (1%)

Query: 1   MDYRKEMNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIAL 59
           M  +  ++  + +++AL  AL+ I+R YGKGA+M+L     +   I V+ +GS+GLD+AL
Sbjct: 1   MARKPALSPEEARAEALGTALATIERKYGKGAVMKLSDDAHV--NIPVIPTGSIGLDLAL 58

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           G+GG P+GRI EI+GPESSGKTTL LH IA+ Q+ GGTCAFVDAEHALD  YAR+LGV+ 
Sbjct: 59  GVGGIPRGRISEIFGPESSGKTTLTLHIIAECQRLGGTCAFVDAEHALDVSYARRLGVNT 118

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
             LLISQPD GEQAL+I DMLVRSGAVD++V+DSVAAL P+AE+EGDMGE+  G  ARLM
Sbjct: 119 DELLISQPDYGEQALDIADMLVRSGAVDLVVVDSVAALIPQAELEGDMGETQVGGHARLM 178

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIG-VMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           S A+R+LT +I +S+  ++FINQ+RMKIG   +GSPETTTGGNALKFYSSVRLDIRR+ +
Sbjct: 179 SHAMRRLTGTIHKSRTSVIFINQIRMKIGVTGYGSPETTTGGNALKFYSSVRLDIRRIQT 238

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           +KDK+   G++TRVKVVKNK+A PF+   FDI+YG GIS  GEL+DLG++A I+D+SG+W
Sbjct: 239 LKDKEESFGSRTRVKVVKNKVAPPFRSAVFDILYGLGISRAGELLDLGIEAKIIDQSGSW 298

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ--EPAINTKDDADK 356
           F+F  ++LGQGRE  +  L ENI++   IE+ + +  GL         E    ++D   +
Sbjct: 299 FAFGAEKLGQGREKVRALLDENIDLRNQIEAKVVEFLGLHPREFTPTAEDIAESQDPVLE 358

Query: 357 D 357
           D
Sbjct: 359 D 359


>gi|194477062|ref|YP_002049241.1| recombinase A [Paulinella chromatophora]
 gi|171192069|gb|ACB43031.1| recombinase A [Paulinella chromatophora]
          Length = 367

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 197/358 (55%), Positives = 267/358 (74%), Gaps = 6/358 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + ++ KAL + LSQI+R +GKG+IM+LG    +   +E +S+G+L LD+ALG GG+PKGR
Sbjct: 12  VENRDKALSSVLSQIERNFGKGSIMRLGDATRMR--VETISTGALTLDLALG-GGYPKGR 68

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL LH IA+ Q+ GG  AFVDAEHALD +YA  LGVD++NLLISQPD
Sbjct: 69  VVEIYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAAALGVDIENLLISQPD 128

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGE ALEI D LVRSGA+DI+VIDSVAALTPRAEIEG+MG+   G QARLMSQA+RK+T 
Sbjct: 129 TGEMALEIVDQLVRSGAIDIVVIDSVAALTPRAEIEGEMGDVAMGSQARLMSQAMRKITG 188

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I +S C ++F+NQ+R+KIGV +G+PETT+GGNALKFY+SVRLDIRR  ++K      G 
Sbjct: 189 NIGKSGCTVIFLNQLRLKIGVTYGNPETTSGGNALKFYASVRLDIRRSQTLKRGTEEYGI 248

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + +VKV KNK+A PF+  EFDI++G GIS  G L+DL  +  +V + GAW+S++G+ +GQ
Sbjct: 249 RAKVKVAKNKVAPPFRVAEFDILFGSGISTLGCLLDLAEETGVVIRKGAWYSYEGENIGQ 308

Query: 309 GRENSKIFLRENIEIAENIESLLRQNA---GLVADSLLQEPAINTKDDADKDDTDNVE 363
           GR+N+  +L  N E  + IE+++R+       V  + ++ P+  + +       D+ E
Sbjct: 309 GRDNTISWLEHNPESLKVIETIIRKKITEGNNVPKNSIELPSSKSTNVITDSVIDSTE 366


>gi|325109244|ref|YP_004270312.1| RecA protein [Planctomyces brasiliensis DSM 5305]
 gi|324969512|gb|ADY60290.1| RecA protein [Planctomyces brasiliensis DSM 5305]
          Length = 357

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 173/327 (52%), Positives = 245/327 (74%), Gaps = 2/327 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K L+ AL QI++ +GKG+IM+L       + +  + +G+L LD+ALG  GFP+GRI+E+
Sbjct: 17  EKVLDNALGQIEKAFGKGSIMRLSDNAD--DAVPGIPTGALSLDMALGGAGFPRGRIIEL 74

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           +GPESSGKTTLALH IA +Q+ GG  A VDAEHALD  +AR+LGV+L+ LL+SQP  GE+
Sbjct: 75  FGPESSGKTTLALHAIANAQRQGGVAAIVDAEHALDPSWARRLGVNLEELLVSQPSYGEE 134

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
            L+I +ML+RS +VDIIV+DSVAAL P+AE++G++G++  G+QAR+MSQA+RKLT  I++
Sbjct: 135 GLQIAEMLIRSNSVDIIVVDSVAALVPKAELDGEIGDTHVGLQARMMSQAMRKLTGVIAK 194

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           +K  ++FINQ+R KIGVMFGSPETT GG ALKFYSS R+D+RR+ S+K+ D + G + + 
Sbjct: 195 AKTTVIFINQIREKIGVMFGSPETTPGGRALKFYSSCRVDVRRISSLKEGDEVIGIRMKA 254

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           K+VKNK+A PF+  EFD+    GIS   +++D+ V   +VD+SG+WFS+   RLGQGRE 
Sbjct: 255 KIVKNKVAPPFRVAEFDMYSTCGISLEADVLDMAVADRVVDRSGSWFSYGETRLGQGRER 314

Query: 313 SKIFLRENIEIAENIESLLRQNAGLVA 339
           ++ FL EN E+   ++  + +  G  A
Sbjct: 315 ARQFLLENPELTRELQQKVMEKRGFAA 341


>gi|319901570|ref|YP_004161298.1| RecA protein [Bacteroides helcogenes P 36-108]
 gi|319416601|gb|ADV43712.1| RecA protein [Bacteroides helcogenes P 36-108]
          Length = 345

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 203/330 (61%), Positives = 267/330 (80%), Gaps = 2/330 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +    M   +K KAL+AA+ +I++ +GKG+IM++G +    E IEV+ +GS+GL++ALG+
Sbjct: 10  ENGNNMASGEKLKALQAAMDKIEKSFGKGSIMKMGDEN--IEQIEVIPTGSIGLNVALGV 67

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+P+GRI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ N
Sbjct: 68  GGYPRGRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYASKLGVDVDN 127

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLISQPD GEQALEI + L+RS A+DIIV+DSVAALTP+AEIEGDMG++  G+QARLMSQ
Sbjct: 128 LLISQPDNGEQALEIAEQLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQ 187

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLTS++S+++   VFINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR   +IK+
Sbjct: 188 ALRKLTSAVSKTRTTCVFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGGQAIKN 247

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            + + G QT+VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG    I+ KSG+WFS+
Sbjct: 248 GEEVIGKQTKVKVVKNKVAPPFRRAEFDIMFGEGISRAGEIIDLGADLGIIKKSGSWFSY 307

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLL 331
              ++ QGR+ +K  + +N E+AE +E L+
Sbjct: 308 NDTKIAQGRDAAKQVILDNPELAEELEGLI 337


>gi|46579503|ref|YP_010311.1| recombinase A [Desulfovibrio vulgaris str. Hildenborough]
 gi|120602948|ref|YP_967348.1| recombinase A [Desulfovibrio vulgaris DP4]
 gi|50403564|sp|P62214|RECA_DESVH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166220642|sp|A1VEQ5|RECA_DESVV RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|46448917|gb|AAS95570.1| recA protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|120563177|gb|ABM28921.1| RecA protein [Desulfovibrio vulgaris DP4]
 gi|311233317|gb|ADP86171.1| recA protein [Desulfovibrio vulgaris RCH1]
          Length = 357

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 208/358 (58%), Positives = 276/358 (77%), Gaps = 7/358 (1%)

Query: 1   MDYRKEMNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIAL 59
           M  +  ++  + + +ALE ALS I+R YG GA+M+L  +  +   I V+ +GS+GLD+AL
Sbjct: 1   MAKKPSLSPEEMRREALETALSTIERKYGLGAVMKLSDEAHV--AIPVIPTGSIGLDLAL 58

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           G+GG P+GR+ EIYGPESSGKTTL LH IA++QK GGT AF+DAEHALD  YAR+LGV+ 
Sbjct: 59  GVGGVPRGRVTEIYGPESSGKTTLTLHIIAEAQKRGGTAAFIDAEHALDVAYARRLGVNT 118

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
           + LLISQPD GEQAL+I DMLVRS AVD++VIDSVAAL P+AE+EG MG++  G QARLM
Sbjct: 119 EELLISQPDFGEQALDIADMLVRSAAVDLVVIDSVAALIPQAELEGSMGDTQVGGQARLM 178

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGS 238
           S ALRKLT +I +S+  ++FINQ+RMKIG M +GSPETTTGGNALKFYSSVR+DIR++ +
Sbjct: 179 SHALRKLTGTIHKSRTAVIFINQIRMKIGTMGYGSPETTTGGNALKFYSSVRMDIRKIQT 238

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           +KDK+ + G++TRVK+VKNK+A PF++  FDI+YG GIS  GE+IDLG  A I+DKSG+W
Sbjct: 239 LKDKEEVYGSRTRVKIVKNKVAPPFREALFDILYGTGISRTGEIIDLGSDAGIIDKSGSW 298

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLL---QEPAINTKDD 353
           F+F  +RLGQG+EN +  L EN  + E IE+ L ++ G+         +EPA + ++D
Sbjct: 299 FAFGSERLGQGKENVRALLEENAPLREAIEAKLIEHLGMTPTKFASSGEEPANDEEND 356


>gi|57233617|ref|YP_182301.1| hypothetical protein DET1606 [Dehalococcoides ethenogenes 195]
 gi|57224065|gb|AAW39122.1| RecA [Dehalococcoides ethenogenes 195]
          Length = 337

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 188/327 (57%), Positives = 245/327 (74%), Gaps = 1/327 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +K KALE  +  I++ +GKG+IM+L S  +  + +E + + SL LDIALG+GG P+GR
Sbjct: 2   TTEKDKALELTVGIIEKRFGKGSIMKL-SDPTFRQTVEFIPTSSLALDIALGVGGIPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I EI+GPE SGKTTLA H IAQ+QK G   A++D EHALD  YA   GV+L  LLISQPD
Sbjct: 61  ISEIFGPEGSGKTTLAQHIIAQAQKMGEKAAYIDVEHALDPKYASTCGVNLDELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGE+AL I + LVRS A+ +IVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT+
Sbjct: 121 TGEEALGIAEELVRSTAIGVIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTA 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           SI +++  ++FINQ+R K+GVMFG+PE T GG ALKFYSSVR+D+RR+ +IK      G 
Sbjct: 181 SIGQTRTAVIFINQLREKVGVMFGNPEVTPGGRALKFYSSVRIDLRRIETIKQGTVAIGT 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + R KVVKNK+A PF+  EFDIM+  GIS  G LIDLGV + ++ K+GA+FS+   RLGQ
Sbjct: 241 RVRAKVVKNKVAPPFRTAEFDIMFDSGISREGNLIDLGVTSEVIRKAGAFFSYGDIRLGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNA 335
           GRE++K +L  N ++A+ IE  +R +A
Sbjct: 301 GRESAKNYLAANPDLAQEIEEKIRASA 327


>gi|237733839|ref|ZP_04564320.1| recombinase A [Mollicutes bacterium D7]
 gi|229383177|gb|EEO33268.1| recombinase A [Coprobacillus sp. D7]
          Length = 345

 Score =  344 bits (881), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 187/333 (56%), Positives = 264/333 (79%), Gaps = 2/333 (0%)

Query: 3   YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
            ++      K +AL+ A+ QI++ YGKG++M+LG + ++   ++V+ +GSL LD+ALGIG
Sbjct: 6   TKENKEEAKKVQALDDAIKQIEKKYGKGSVMKLGDRAAV--SVDVIPTGSLTLDLALGIG 63

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G+PKGRI+EIYGPESSGKTTL LH IA+ QK GG  AF+DAEHA+D +YA+ LGV++  L
Sbjct: 64  GYPKGRIIEIYGPESSGKTTLTLHAIAECQKQGGRAAFIDAEHAIDPVYAQNLGVNIDEL 123

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           ++SQPD+GEQ LEI + LVRSGA+D++V+DSVAAL P+ E++G+MG+S  G+QARLMS+A
Sbjct: 124 ILSQPDSGEQGLEIAETLVRSGAIDLVVVDSVAALVPQVELDGEMGDSQMGLQARLMSKA 183

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           LRK+ + +++S+C ++FINQ+R KIG+MFG+PETTTGG ALKFYSSVR++IRR  +IK  
Sbjct: 184 LRKIAAELNKSECTIIFINQLREKIGIMFGNPETTTGGRALKFYSSVRVEIRRSEAIKLG 243

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
             I GN+  +KVVKNK+A PFK  + DI+YG+GIS  GE++DL V+  IV+KSGAW+++K
Sbjct: 244 TEIVGNKVNIKVVKNKVAPPFKTTQVDIIYGKGISRDGEVLDLAVEKDIVEKSGAWYAYK 303

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
           G+++GQGREN+K FL  + EI E I   ++ + 
Sbjct: 304 GEKIGQGRENAKTFLSTHSEIMEEITQAIKDSL 336


>gi|126046700|gb|ABN73106.1| RecA [Burkholderia sp. 'isolate BCCU3']
          Length = 303

 Score =  344 bits (881), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 215/304 (70%), Positives = 264/304 (86%), Gaps = 1/304 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ Q
Sbjct: 1   MRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVID
Sbjct: 60  KLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG
Sbjct: 120 SVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFG 179

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+Y
Sbjct: 180 NPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILY 239

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           GEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ +R
Sbjct: 240 GEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIR 299

Query: 333 QNAG 336
           ++ G
Sbjct: 300 ESLG 303


>gi|33863994|ref|NP_895554.1| recombinase A [Prochlorococcus marinus str. MIT 9313]
 gi|50403572|sp|Q7V547|RECA_PROMM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|33635578|emb|CAE21902.1| RecA bacterial DNA recombination protein [Prochlorococcus marinus
           str. MIT 9313]
          Length = 379

 Score =  344 bits (881), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 192/330 (58%), Positives = 251/330 (76%), Gaps = 3/330 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E    ++ KAL   L QI+R +GKG+IM+LG    +   +E   +G+L LD+ALG GG+P
Sbjct: 19  EPRPGERDKALNLVLGQIERNFGKGSIMRLGDASRMR--VETFPTGALTLDLALG-GGYP 75

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR+VE+YGPESSGKTTL LH IA+ Q+ GG  AFVDAEHALD +YA  LGVD++NLL+S
Sbjct: 76  KGRVVEVYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASLGVDIENLLVS 135

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGE ALEI D LVRS AVDI+V+DSVAALTPR+EIEG+MG+   G QARLMSQA+RK
Sbjct: 136 QPDTGEMALEIVDQLVRSAAVDIVVVDSVAALTPRSEIEGEMGDLAVGSQARLMSQAMRK 195

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           +T +I +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K     
Sbjct: 196 ITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEE 255

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            G + +VKV KNK+A PF+  EFDI++G GIS  G L+DL  +  +V + GAW+S++G  
Sbjct: 256 YGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVIRKGAWYSYEGDN 315

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNA 335
           +GQGR+N+  +L +N E  E IE L+RQ  
Sbjct: 316 IGQGRDNTITWLEQNSEAQEQIEVLVRQKL 345


>gi|160887383|ref|ZP_02068386.1| hypothetical protein BACOVA_05402 [Bacteroides ovatus ATCC 8483]
 gi|299148957|ref|ZP_07042019.1| protein RecA [Bacteroides sp. 3_1_23]
 gi|156107794|gb|EDO09539.1| hypothetical protein BACOVA_05402 [Bacteroides ovatus ATCC 8483]
 gi|298513718|gb|EFI37605.1| protein RecA [Bacteroides sp. 3_1_23]
          Length = 344

 Score =  344 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 199/334 (59%), Positives = 265/334 (79%), Gaps = 2/334 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +   +M   +K KAL+AA+ +I++ +GKG+IM++G      E +EV+ +GS+ L++ALG+
Sbjct: 10  ETDNKMASSEKLKALQAAMEKIEKSFGKGSIMKMGDDS--VEQVEVIPTGSIALNVALGV 67

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+P+GRI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGV++ +
Sbjct: 68  GGYPRGRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYASKLGVNIDD 127

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L ISQPD GEQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++  G+QARLMSQ
Sbjct: 128 LYISQPDNGEQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQ 187

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT+++S+++   +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR    IKD
Sbjct: 188 ALRKLTAAVSKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQPIKD 247

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            + I G  T+VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG    I+ KSG+W+S+
Sbjct: 248 GEEILGKLTKVKVVKNKVAPPFRRAEFDIMFGEGISHSGEIIDLGADLGIIKKSGSWYSY 307

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
              +LGQGR+ +K  + +N E+AE +E L+ +  
Sbjct: 308 NDTKLGQGRDAAKQCIMDNPELAEELEGLIFEEL 341


>gi|153952602|ref|YP_001398953.1| recombinase A [Campylobacter jejuni subsp. doylei 269.97]
 gi|166220637|sp|A7H623|RECA_CAMJD RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|152940048|gb|ABS44789.1| recA protein [Campylobacter jejuni subsp. doylei 269.97]
          Length = 343

 Score =  344 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 207/349 (59%), Positives = 270/349 (77%), Gaps = 10/349 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+AAL  + + +GKG I++LG +    E I+ + +GS+GLD+ALGIGG PKGRIV
Sbjct: 4   NKRKSLDAALKSLDKTFGKGTILRLGDKE--VEQIDSIGTGSVGLDLALGIGGIPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD  YA+ LGV+  +L +SQPD G
Sbjct: 62  EIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLGVNTDDLYVSQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSGAVD+IV+DSVAALTP+AEIEGDMG+   G+QARLMSQALRKLT  +
Sbjct: 122 EQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRKLTGIV 181

Query: 191 SRSKCILVFINQMRMKIG-VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+R+KIG   +G+PETTTGGNALKFY+SVRLD+R++ ++K  +   GN+
Sbjct: 182 HKMNTTVIFINQIRIKIGATGYGTPETTTGGNALKFYASVRLDVRKIATLKQNEEPIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PF+Q EFD+M+GEG+S  GELID GVK  IVDKSGAWFS+K ++LGQG
Sbjct: 242 VKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           RENSK FL+EN EIA+ I   ++ + G+       E  I+  +D + ++
Sbjct: 302 RENSKAFLKENPEIADEITKAIQNSMGI-------EGMISGSEDDEGEE 343


>gi|189467481|ref|ZP_03016266.1| hypothetical protein BACINT_03870 [Bacteroides intestinalis DSM
           17393]
 gi|189435745|gb|EDV04730.1| hypothetical protein BACINT_03870 [Bacteroides intestinalis DSM
           17393]
          Length = 345

 Score =  344 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 201/334 (60%), Positives = 269/334 (80%), Gaps = 2/334 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +   ++   +K KAL+AA+ +I++ +GKG+IM++G +    E +EV+ +GS+GL++ALG+
Sbjct: 10  ENENKIAPSEKLKALQAAMDKIEKSFGKGSIMKMGDES--VEQVEVIPTGSIGLNVALGV 67

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+P+GRI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ N
Sbjct: 68  GGYPRGRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDN 127

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLISQPD GEQALEI + L+RS A+DIIV+DSVAALTP+AEIEGDMG++  G+QARLMSQ
Sbjct: 128 LLISQPDNGEQALEIAEQLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQ 187

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT+++S+++   +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR   +IK+
Sbjct: 188 ALRKLTAAVSKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQAIKN 247

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            D + G QT+VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG    I+ KSG+WFS+
Sbjct: 248 GDEVLGKQTKVKVVKNKVAPPFRRAEFDIMFGEGISRAGEIIDLGADLGIIKKSGSWFSY 307

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
              +L QGR+ +K  + +N E+AE +E L+ +  
Sbjct: 308 NETKLAQGRDAAKQVVADNPELAEELEGLIFEAL 341


>gi|167762576|ref|ZP_02434703.1| hypothetical protein BACSTE_00932 [Bacteroides stercoris ATCC
           43183]
 gi|167699682|gb|EDS16261.1| hypothetical protein BACSTE_00932 [Bacteroides stercoris ATCC
           43183]
          Length = 345

 Score =  344 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 201/334 (60%), Positives = 269/334 (80%), Gaps = 2/334 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +    M   +K KAL+AA+ +I++ +GKG+IM++G +    E +EV+ +GS+GL++ALG+
Sbjct: 10  ENGNNMAGSEKLKALQAAMDKIEKSFGKGSIMKMGDES--VEQVEVIPTGSIGLNVALGV 67

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+P+GRI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ N
Sbjct: 68  GGYPRGRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDN 127

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLISQPD GEQALEI + L+RS A+DIIV+DSVAALTP+AEIEGDMG++  G+QARLMSQ
Sbjct: 128 LLISQPDNGEQALEIAEQLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQ 187

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLTS++S+++   +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR   +IK+
Sbjct: 188 ALRKLTSAVSKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGGQAIKN 247

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            + + G QT+VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG +  I+ KSG+WFS+
Sbjct: 248 GEEVIGKQTKVKVVKNKVAPPFRRAEFDIMFGEGISRAGEIIDLGAELGIIKKSGSWFSY 307

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
              ++ QGR+ +K  + +N E+AE +E L+ +  
Sbjct: 308 NDTKIAQGRDAAKQVILDNPELAEELEGLIFEEL 341


>gi|291515720|emb|CBK64930.1| RecA protein [Alistipes shahii WAL 8301]
          Length = 338

 Score =  344 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 204/335 (60%), Positives = 269/335 (80%), Gaps = 3/335 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M  + ++N  DK K L+A + +I++ +GKG+IM++    +    I V+ +GS+ LD+ALG
Sbjct: 1   MAEKVQIN-ADKLKVLDAVMQKIEKDFGKGSIMRM--NSTEVNDIPVIPTGSITLDMALG 57

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG+PKGR+VEIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA DS YA+KLGVD+ 
Sbjct: 58  VGGYPKGRVVEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDSFYAQKLGVDVD 117

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NLLISQPD GEQALEI D L+RS A+DIIVIDSVAALTP+AEIEG+MG+S  G+QARLMS
Sbjct: 118 NLLISQPDNGEQALEIADSLIRSSAIDIIVIDSVAALTPKAEIEGEMGDSKMGLQARLMS 177

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLTSSIS++K + +FINQ+R KIGV++G+PETTTGGNALKFY+SVR+DIRR+  IK
Sbjct: 178 QALRKLTSSISKTKTVCIFINQLRDKIGVVYGNPETTTGGNALKFYASVRIDIRRMSVIK 237

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D +   G +T+VKVVKNK+A PFK+ EFDIM+GEGIS  GE++DLGV   +V K+G+WFS
Sbjct: 238 DGEDQLGTRTKVKVVKNKVAPPFKRAEFDIMFGEGISKIGEIVDLGVDYGVVKKAGSWFS 297

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
           +  +++GQGR+  K  L+ + E+   IE+ +R+  
Sbjct: 298 YGDRKIGQGRDAVKELLKNDEELRNEIEAKVREAM 332


>gi|124023990|ref|YP_001018297.1| recombinase A [Prochlorococcus marinus str. MIT 9303]
 gi|166220665|sp|A2CC22|RECA_PROM3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123964276|gb|ABM79032.1| RecA bacterial DNA recombination protein [Prochlorococcus marinus
           str. MIT 9303]
          Length = 379

 Score =  344 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 192/330 (58%), Positives = 251/330 (76%), Gaps = 3/330 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E    ++ KAL   L QI+R +GKG+IM+LG    +   +E   +G+L LD+ALG GG+P
Sbjct: 19  EPRPGERDKALNLVLGQIERNFGKGSIMRLGDASRMR--VETFPTGALTLDLALG-GGYP 75

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR+VE+YGPESSGKTTL LH IA+ Q+ GG  AFVDAEHALD +YA  LGVD++NLL+S
Sbjct: 76  KGRVVEVYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASLGVDIENLLVS 135

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGE ALEI D LVRS AVDI+V+DSVAALTPR+EIEG+MG+   G QARLMSQA+RK
Sbjct: 136 QPDTGEMALEIVDQLVRSAAVDIVVVDSVAALTPRSEIEGEMGDLAVGSQARLMSQAMRK 195

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           +T +I +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K     
Sbjct: 196 ITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEE 255

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            G + +VKV KNK+A PF+  EFDI++G GIS  G L+DL  +  +V + GAW+S++G  
Sbjct: 256 YGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVIRKGAWYSYEGDN 315

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNA 335
           +GQGR+N+  +L +N E  E IE L+RQ  
Sbjct: 316 IGQGRDNTITWLEQNSEAQEQIEVLVRQKL 345


>gi|88607421|ref|YP_505854.1| recombinase A [Anaplasma phagocytophilum HZ]
 gi|88598484|gb|ABD43954.1| recA protein [Anaplasma phagocytophilum HZ]
          Length = 354

 Score =  344 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 203/354 (57%), Positives = 282/354 (79%), Gaps = 5/354 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +  DK +A++AA+ QI+R +G+G+IM+L  Q S  E +E VS+GS+ LD ALG+GG P+G
Sbjct: 4   SPSDKQRAVDAAIGQIERAFGRGSIMRL--QNSPVEAVECVSTGSIALDAALGVGGLPRG 61

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EI+GPESSGKTTLALH IA++QK GG CAF+DAEHALD++YARKLGV + +L++SQP
Sbjct: 62  RIIEIFGPESSGKTTLALHVIAEAQKNGGACAFIDAEHALDTLYARKLGVSVGDLIVSQP 121

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQAL I + LV SGAVD+IV+DSVAALTPRAEIEGDMG+   G+QARL+S ALRKLT
Sbjct: 122 DTGEQALHIVEHLVNSGAVDVIVVDSVAALTPRAEIEGDMGDQHMGLQARLLSHALRKLT 181

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           S +S++ C+LVFINQ+RMKIGV++G+PE TTGG+ALKFY+S+RLDIR+V ++K+K+++TG
Sbjct: 182 SIVSKANCLLVFINQIRMKIGVVYGNPEVTTGGSALKFYTSIRLDIRKVSALKEKENVTG 241

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           +  RVKVVKNK+A PFKQ EFDIMY EGIS  GE++D+GV+   ++K+G+++S +G +LG
Sbjct: 242 HLARVKVVKNKVAPPFKQAEFDIMYSEGISKVGEILDMGVRFGFIEKAGSYYSHEGIKLG 301

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           QGRE ++ +L+ N +++  +E L+R       +S+       +   A  ++ + 
Sbjct: 302 QGRETARSYLKNNADLSHKLEGLIRAKL---LESMRSSDVFGSDGRAPSEEIEE 352


>gi|20178061|sp|Q9EVV7|RECA_STRTR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|12055066|emb|CAC21189.1| RecA protein [Streptococcus thermophilus]
          Length = 379

 Score =  344 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 196/363 (53%), Positives = 267/363 (73%), Gaps = 12/363 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I + +GKGA+M+LG +    E ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERWKALDDALKNIGKDFGKGAVMRLGERAE--EKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIACKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+G+MFG+PETT GG ALKFY+ V LD+R    IK     KD   
Sbjct: 196 NKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYAYVALDVRGNTQIKGTGDKKDQNV 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++
Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDIGIIQKAGAWFSYNGEKI 315

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV---ADSLLQEPAINTKDDA---DKDDTD 360
           GQG EN+K +L ++ EI   I+  +R + GL+    D ++++  +    D    D D T 
Sbjct: 316 GQGSENAKKYLADHPEIFAEIDHKVRVHYGLIELDEDDVVEDTQVEDTSDELILDLDSTI 375

Query: 361 NVE 363
            +E
Sbjct: 376 EIE 378


>gi|260171325|ref|ZP_05757737.1| recombinase A [Bacteroides sp. D2]
 gi|315919636|ref|ZP_07915876.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693511|gb|EFS30346.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 344

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 199/334 (59%), Positives = 266/334 (79%), Gaps = 2/334 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +   +M   +K KAL+AA+ +I++ +GKG+IM++G      E +EV+ +GS+ L++ALG+
Sbjct: 10  ETDNKMASSEKLKALQAAMEKIEKSFGKGSIMKMGDDS--VEQVEVIPTGSIALNVALGV 67

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+P+GRI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGV++ +
Sbjct: 68  GGYPRGRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYASKLGVNIDD 127

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L ISQPD GEQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++  G+QARLMSQ
Sbjct: 128 LYISQPDNGEQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQ 187

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT+++S+++   +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR    IKD
Sbjct: 188 ALRKLTAAVSKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQPIKD 247

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            + I G  T+VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG +  I+ KSG+W+S+
Sbjct: 248 GEEILGKLTKVKVVKNKVAPPFRRAEFDIMFGEGISHSGEIIDLGAELGIIKKSGSWYSY 307

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
              +LGQGR+ +K  + +N E+AE +E L+ +  
Sbjct: 308 NDTKLGQGRDAAKQCIMDNPELAEELEGLIFEEL 341


>gi|114566781|ref|YP_753935.1| hypothetical protein Swol_1255 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337716|gb|ABI68564.1| RecA protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 344

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 197/330 (59%), Positives = 266/330 (80%), Gaps = 4/330 (1%)

Query: 6   EMNIVDKSK--ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           E+N V+K K  AL + +  I++ +GKG+IM+LG   ++   +EV+S+G + LD+ALG+GG
Sbjct: 2   EINEVNKGKMEALNSTIKNIEKQFGKGSIMKLGEAVNM--NVEVISTGCISLDLALGVGG 59

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P+GR++EI+GPESSGKTT+ALH IAQ+QK GG  AF+DAEHALD +YARKLGVD+ NLL
Sbjct: 60  IPRGRVIEIFGPESSGKTTVALHAIAQAQKDGGMAAFIDAEHALDPLYARKLGVDINNLL 119

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPD+GEQALEI + LVRSGAVDIIVIDSVAAL PRAE++G+MG+   G+QARLMSQAL
Sbjct: 120 VSQPDSGEQALEIAEALVRSGAVDIIVIDSVAALVPRAELDGEMGDIHVGLQARLMSQAL 179

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT+ I +S   ++FINQ+R K+GV++G+PETTTGG ALKFYSSVR+++R+  +IK   
Sbjct: 180 RKLTAHIGKSNACVLFINQIREKVGVVYGNPETTTGGRALKFYSSVRIEVRKGEAIKQGT 239

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+T+VKVVKNK+A PFK  EFDIMYG GIS  G+L+D+ V   I+ KSG+W++++G
Sbjct: 240 DLIGNKTKVKVVKNKVAPPFKTAEFDIMYGIGISREGDLLDIAVTTDIIQKSGSWYAYQG 299

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           +RLGQGREN+K +L+ + E    +ES ++ 
Sbjct: 300 ERLGQGRENAKEYLKNHPEFMTLLESRIKD 329


>gi|296803002|gb|ADH51577.1| DNA recombinase [Burkholderia contaminans]
          Length = 301

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 215/302 (71%), Positives = 263/302 (87%), Gaps = 1/302 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+
Sbjct: 1   SIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IV
Sbjct: 60  LQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM
Sbjct: 120 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 179

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI
Sbjct: 180 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 239

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
           +YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ 
Sbjct: 240 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 299

Query: 331 LR 332
           +R
Sbjct: 300 IR 301


>gi|167754522|ref|ZP_02426649.1| hypothetical protein CLORAM_00023 [Clostridium ramosum DSM 1402]
 gi|167705354|gb|EDS19933.1| hypothetical protein CLORAM_00023 [Clostridium ramosum DSM 1402]
          Length = 348

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 187/333 (56%), Positives = 264/333 (79%), Gaps = 2/333 (0%)

Query: 3   YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
            ++      K +AL+ A+ QI++ YGKG++M+LG + ++   ++V+ +GSL LD+ALGIG
Sbjct: 9   TKENKEEAKKVQALDDAIKQIEKKYGKGSVMKLGDRAAV--SVDVIPTGSLTLDLALGIG 66

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G+PKGRI+EIYGPESSGKTTL LH IA+ QK GG  AF+DAEHA+D +YA+ LGV++  L
Sbjct: 67  GYPKGRIIEIYGPESSGKTTLTLHAIAECQKQGGRAAFIDAEHAIDPVYAQNLGVNIDEL 126

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           ++SQPD+GEQ LEI + LVRSGA+D++V+DSVAAL P+ E++G+MG+S  G+QARLMS+A
Sbjct: 127 ILSQPDSGEQGLEIAETLVRSGAIDLVVVDSVAALVPQVELDGEMGDSQMGLQARLMSKA 186

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           LRK+ + +++S+C ++FINQ+R KIG+MFG+PETTTGG ALKFYSSVR++IRR  +IK  
Sbjct: 187 LRKIAAELNKSECTIIFINQLREKIGIMFGNPETTTGGRALKFYSSVRVEIRRSEAIKLG 246

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
             I GN+  +KVVKNK+A PFK  + DI+YG+GIS  GE++DL V+  IV+KSGAW+++K
Sbjct: 247 TEIVGNKVNIKVVKNKVAPPFKTTQVDIIYGKGISRDGEVLDLAVEKDIVEKSGAWYAYK 306

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
           G+++GQGREN+K FL  + EI E I   ++ + 
Sbjct: 307 GEKIGQGRENAKTFLSTHSEIMEEITQAIKDSL 339


>gi|57238684|ref|YP_179815.1| recombinase A [Campylobacter jejuni RM1221]
 gi|86149428|ref|ZP_01067659.1| recA protein [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|86152335|ref|ZP_01070546.1| recA protein [Campylobacter jejuni subsp. jejuni 260.94]
 gi|86152611|ref|ZP_01070816.1| recA protein [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|88596829|ref|ZP_01100066.1| recA protein [Campylobacter jejuni subsp. jejuni 84-25]
 gi|121612592|ref|YP_001001316.1| recombinase A [Campylobacter jejuni subsp. jejuni 81-176]
 gi|157415892|ref|YP_001483148.1| recombinase A [Campylobacter jejuni subsp. jejuni 81116]
 gi|167006209|ref|ZP_02271967.1| recA protein [Campylobacter jejuni subsp. jejuni 81-176]
 gi|205355691|ref|ZP_03222461.1| RecA protein [Campylobacter jejuni subsp. jejuni CG8421]
 gi|218563261|ref|YP_002345041.1| recombinase A [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|315125067|ref|YP_004067071.1| recombinase A [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
 gi|76363322|sp|Q5HSC0|RECA_CAMJR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123042670|sp|Q0P7V6|RECA_CAMJE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|146325678|sp|A1W1S5|RECA_CAMJJ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|172047205|sp|A8FNY4|RECA_CAMJ8 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|57167488|gb|AAW36267.1| RecA [Campylobacter jejuni RM1221]
 gi|85840210|gb|EAQ57468.1| recA protein [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|85840824|gb|EAQ58075.1| recA protein [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85843496|gb|EAQ60706.1| recA protein [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|87249761|gb|EAQ72720.1| recA protein [Campylobacter jejuni subsp. jejuni 81-176]
 gi|88191670|gb|EAQ95642.1| recA protein [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112360968|emb|CAL35769.1| recA protein [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|157386856|gb|ABV53171.1| recA protein [Campylobacter jejuni subsp. jejuni 81116]
 gi|205346468|gb|EDZ33101.1| RecA protein [Campylobacter jejuni subsp. jejuni CG8421]
 gi|284926866|gb|ADC29218.1| recA protein [Campylobacter jejuni subsp. jejuni IA3902]
 gi|307748529|gb|ADN91799.1| Protein recA [Campylobacter jejuni subsp. jejuni M1]
 gi|315018789|gb|ADT66882.1| recombinase A [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
 gi|315059123|gb|ADT73452.1| RecA protein [Campylobacter jejuni subsp. jejuni S3]
 gi|315927577|gb|EFV06908.1| protein RecA [Campylobacter jejuni subsp. jejuni DFVF1099]
 gi|315930237|gb|EFV09351.1| recombinase A [Campylobacter jejuni subsp. jejuni 305]
 gi|315931363|gb|EFV10332.1| protein RecA [Campylobacter jejuni subsp. jejuni 327]
          Length = 343

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 209/349 (59%), Positives = 271/349 (77%), Gaps = 10/349 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+AAL  + + +GKG I++LG +    E I+ + +GS+GLD+ALGIGG PKGRI+
Sbjct: 4   NKRKSLDAALKSLDKTFGKGTILRLGDKE--VEQIDSIGTGSVGLDLALGIGGVPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD  YA+ LGV+  +L +SQPD G
Sbjct: 62  EIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLGVNTDDLYVSQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSGAVD+IV+DSVAALTP+AEIEGDMG+   G+QARLMSQALRKLT  +
Sbjct: 122 EQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRKLTGIV 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R+V ++K  +   GN+
Sbjct: 182 HKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQNEEPIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PF+Q EFD+M+GEG+S  GELID GVK  IVDKSGAWFS+K ++LGQG
Sbjct: 242 VKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           RENSK FL+EN EIA+ I   ++ + G+       E  I+  +D + ++
Sbjct: 302 RENSKAFLKENPEIADEITKAIQNSMGI-------EGMISGSEDDEGEE 343


>gi|118474319|ref|YP_891406.1| recombinase A [Campylobacter fetus subsp. fetus 82-40]
 gi|3219847|sp|O30884|RECA_CAMFE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166199601|sp|A0RMH3|RECA_CAMFF RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|2642184|gb|AAB86923.1| recombinase [Campylobacter fetus]
 gi|118413545|gb|ABK81965.1| protein RecA [Campylobacter fetus subsp. fetus 82-40]
          Length = 345

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 219/347 (63%), Positives = 269/347 (77%), Gaps = 6/347 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+ AL QI + +GKG +++LG +    E I+ +SSGS+GLDIALGIGG PKGRIV
Sbjct: 4   NKKKSLDLALKQIDKAFGKGTVLRLGDKE--IEPIDSISSGSIGLDIALGIGGVPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+SQK GG CAFVDAEHALD  YA+ LGVD  NL ISQPD G
Sbjct: 62  EIYGPESSGKTTLTLHLIAESQKVGGVCAFVDAEHALDVKYAKNLGVDTDNLYISQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL+I + L RSGAVD+IVIDSVAALTP++EIEGDMG+   G+QARLMSQALRKLT  +
Sbjct: 122 EQALDIVETLARSGAVDLIVIDSVAALTPKSEIEGDMGDQHVGLQARLMSQALRKLTGVV 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    +VFINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R++ ++K  D   GN+
Sbjct: 182 HKMGTTVVFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKIATLKQSDEPIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PF+Q EFDIM+GEGIS  GE+ID GVK  I+DKSGAWFS+   +LGQG
Sbjct: 242 VKVKVVKNKVAPPFRQAEFDIMFGEGISKEGEIIDYGVKLDIIDKSGAWFSYDNSKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           RENSK FL+EN  IA+ I   +R N G   DS++       + + D+
Sbjct: 302 RENSKAFLKENKAIADEITEKIRANMG---DSIMSGAVDEEEMEGDE 345


>gi|73749380|ref|YP_308619.1| recA protein [Dehalococcoides sp. CBDB1]
 gi|147669989|ref|YP_001214807.1| recA protein [Dehalococcoides sp. BAV1]
 gi|289433338|ref|YP_003463211.1| recA protein [Dehalococcoides sp. GT]
 gi|73661096|emb|CAI83703.1| recA protein [Dehalococcoides sp. CBDB1]
 gi|146270937|gb|ABQ17929.1| recA protein [Dehalococcoides sp. BAV1]
 gi|288947058|gb|ADC74755.1| recA protein [Dehalococcoides sp. GT]
          Length = 337

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 189/327 (57%), Positives = 245/327 (74%), Gaps = 1/327 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +K KALE  +  I++ +GKG+IM+L S  S  + +E + + SL LDIALG+GG P+GR
Sbjct: 2   TTEKDKALELTVGIIEKRFGKGSIMKL-SDPSFRQTVEFIPTSSLALDIALGVGGIPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           + EI+GPE SGKTTLA H IAQ+QK G   A++D EHALD  YA   GV+L  LLISQPD
Sbjct: 61  VAEIFGPEGSGKTTLAQHIIAQAQKMGEKAAYIDVEHALDPKYASTCGVNLDELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGE+AL I + LVRS A+ +IVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT+
Sbjct: 121 TGEEALGIAEELVRSAAIGVIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTA 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           SI +++  +VFINQ+R K+GVMFG+PE T GG ALKFYSSVR+D+RR+ +IK      G 
Sbjct: 181 SIGQTRTAVVFINQLREKVGVMFGNPEVTPGGRALKFYSSVRIDLRRIETIKQGTVAVGT 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + R KVVKNK+A PF+  EFDIM+  GIS  G LIDLGV + ++ K+GA+FS+   RLGQ
Sbjct: 241 RVRAKVVKNKVAPPFRTAEFDIMFDSGISREGNLIDLGVSSEVIRKAGAFFSYGDIRLGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNA 335
           GRE++K +L  N ++A+ IE  +R +A
Sbjct: 301 GRESAKNYLAANPDLAQEIEEKIRASA 327


>gi|270308855|ref|YP_003330913.1| recombination protein RecA [Dehalococcoides sp. VS]
 gi|270154747|gb|ACZ62585.1| recombination protein RecA [Dehalococcoides sp. VS]
          Length = 337

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 190/327 (58%), Positives = 245/327 (74%), Gaps = 1/327 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +K KALE  +  I++ +GKG+IM+L S  S  + +E + + SL LDIALG+GG P+GR
Sbjct: 2   TTEKDKALELTVGIIEKRFGKGSIMKL-SDPSFRQTVEFIPTSSLALDIALGVGGIPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I EI+GPE SGKTTLA H IAQ+QK G   A++D EHALD  YA   GV+L  LLISQPD
Sbjct: 61  IAEIFGPEGSGKTTLAQHIIAQAQKMGEKAAYIDVEHALDPKYASTCGVNLDELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGE+AL I + LVRS A+ +IVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLTS
Sbjct: 121 TGEEALGIAEELVRSTAIGVIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTS 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           SI +++  ++FINQ+R K+GVMFG+PE T GG ALKFYSSVR+D+RR+ +IK      G 
Sbjct: 181 SIGQTRTAVIFINQLREKVGVMFGNPEVTPGGRALKFYSSVRIDLRRIETIKQGTIAVGT 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + R KVVKNK+A PF+  EFDIM+  GIS  G LIDLGV + ++ K+GA+FS+   RLGQ
Sbjct: 241 RVRAKVVKNKVAPPFRTAEFDIMFDSGISREGNLIDLGVTSEVIRKAGAFFSYGDIRLGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNA 335
           GRE++K +L  N ++A+ IE  +R +A
Sbjct: 301 GRESAKNYLAANPDLAQEIEEKIRASA 327


>gi|124026712|ref|YP_001015827.1| recombinase A [Prochlorococcus marinus str. NATL1A]
 gi|166220664|sp|A2C503|RECA_PROM1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123961780|gb|ABM76563.1| RecA bacterial DNA recombination protein [Prochlorococcus marinus
           str. NATL1A]
          Length = 377

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 186/334 (55%), Positives = 256/334 (76%), Gaps = 3/334 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
             + +    +K KAL   + QI+R +GKG+IM+LG    +   +E +S+G+L LD+ALG 
Sbjct: 13  STKIDAKSGEKEKALSLVVGQIERNFGKGSIMRLGDASKMR--VETISTGALTLDLALG- 69

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+PKGR++E+YGPESSGKTTL LH IA+ Q+ GG  AFVDAEHALD +YA  LGVD++N
Sbjct: 70  GGYPKGRVIEVYGPESSGKTTLTLHAIAEIQRNGGVAAFVDAEHALDPVYAASLGVDVEN 129

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGE ALEI D L+RS AVD++V+DSVAALTPR+EIEG+MG+   G QARLMSQ
Sbjct: 130 LLVSQPDTGEMALEIVDQLIRSAAVDLVVVDSVAALTPRSEIEGEMGDHSVGAQARLMSQ 189

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RK+T +I +S C ++F+NQ+R+KIG+ +G+PETTTGGNALKFY+SVRLDIRR+ ++K 
Sbjct: 190 AMRKITGNIGKSGCTVIFLNQLRLKIGITYGNPETTTGGNALKFYASVRLDIRRIQTLKR 249

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
                G + +VKV KNK+A PF+  EFDI++G+GIS  G L+DL  + ++V + GAW+S+
Sbjct: 250 GTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTLGCLLDLADETNVVTRKGAWYSY 309

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
           +G  +GQGR+N+  +L +N E  E IE L+++  
Sbjct: 310 EGDNIGQGRDNTITWLEQNPESKEIIEKLVKEKL 343


>gi|72382971|ref|YP_292326.1| recombinase A [Prochlorococcus marinus str. NATL2A]
 gi|123746243|sp|Q46IQ5|RECA_PROMT RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|72002821|gb|AAZ58623.1| RecA protein [Prochlorococcus marinus str. NATL2A]
          Length = 377

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 186/330 (56%), Positives = 255/330 (77%), Gaps = 3/330 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           +    +K KAL   + QI+R +GKG+IM+LG    +   +E +S+G+L LD+ALG GG+P
Sbjct: 17  DAKSGEKEKALSLVVGQIERNFGKGSIMRLGDASKMR--VETISTGALTLDLALG-GGYP 73

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR++E+YGPESSGKTTL LH IA+ Q+ GG  AFVDAEHALD +YA  LGVD++NLL+S
Sbjct: 74  KGRVIEVYGPESSGKTTLTLHAIAEIQRNGGVAAFVDAEHALDPVYAASLGVDVENLLVS 133

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGE ALEI D L+RS AVD++V+DSVAALTPR+EIEG+MG+   G QARLMSQA+RK
Sbjct: 134 QPDTGEMALEIVDQLIRSAAVDLVVVDSVAALTPRSEIEGEMGDHSVGAQARLMSQAMRK 193

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           +T +I +S C ++F+NQ+R+KIG+ +G+PETTTGGNALKFY+SVRLDIRR+ ++K     
Sbjct: 194 ITGNIGKSGCTVIFLNQLRLKIGITYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEE 253

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            G + +VKV KNK+A PF+  EFDI++G+GIS  G L+DL  + ++V + GAW+S++G  
Sbjct: 254 YGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTLGCLLDLADETNVVTRKGAWYSYEGDN 313

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNA 335
           +GQGR+N+  +L +N E  E IE L+++  
Sbjct: 314 IGQGRDNTITWLEQNPESKEIIEKLVKEKL 343


>gi|237713482|ref|ZP_04543963.1| recombinase A [Bacteroides sp. D1]
 gi|237722637|ref|ZP_04553118.1| recombinase A [Bacteroides sp. 2_2_4]
 gi|262407268|ref|ZP_06083816.1| recA protein [Bacteroides sp. 2_1_22]
 gi|293374067|ref|ZP_06620406.1| protein RecA [Bacteroides ovatus SD CMC 3f]
 gi|294809553|ref|ZP_06768248.1| RecA protein [Bacteroides xylanisolvens SD CC 1b]
 gi|298482690|ref|ZP_07000874.1| protein RecA [Bacteroides sp. D22]
 gi|229446464|gb|EEO52255.1| recombinase A [Bacteroides sp. D1]
 gi|229448447|gb|EEO54238.1| recombinase A [Bacteroides sp. 2_2_4]
 gi|262354076|gb|EEZ03168.1| recA protein [Bacteroides sp. 2_1_22]
 gi|292631028|gb|EFF49667.1| protein RecA [Bacteroides ovatus SD CMC 3f]
 gi|294443253|gb|EFG12025.1| RecA protein [Bacteroides xylanisolvens SD CC 1b]
 gi|295087159|emb|CBK68682.1| RecA protein [Bacteroides xylanisolvens XB1A]
 gi|298271153|gb|EFI12730.1| protein RecA [Bacteroides sp. D22]
          Length = 344

 Score =  343 bits (879), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 199/334 (59%), Positives = 265/334 (79%), Gaps = 2/334 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +   +M   +K KAL+AA+ +I++ +GKG+IM++G      E +EV+ +GS+ L++ALG+
Sbjct: 10  ETDNKMASSEKLKALQAAMEKIEKSFGKGSIMKMGDDS--VEQVEVIPTGSIALNVALGV 67

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+P+GRI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGV++ +
Sbjct: 68  GGYPRGRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYASKLGVNIDD 127

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L ISQPD GEQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++  G+QARLMSQ
Sbjct: 128 LYISQPDNGEQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQ 187

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT+++S+++   +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR    IKD
Sbjct: 188 ALRKLTAAVSKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQPIKD 247

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            + I G  T+VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG    I+ KSG+W+S+
Sbjct: 248 GEEILGKLTKVKVVKNKVAPPFRKAEFDIMFGEGISHSGEIIDLGADLGIIKKSGSWYSY 307

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
              +LGQGR+ +K  + +N E+AE +E L+ +  
Sbjct: 308 NDTKLGQGRDAAKQCIMDNPELAEELEGLIFEEL 341


>gi|238897272|ref|YP_002922949.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259563338|sp|C4K841|RECA_HAMD5 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|229465027|gb|ACQ66801.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 354

 Score =  343 bits (879), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 202/340 (59%), Positives = 260/340 (76%), Gaps = 11/340 (3%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTT
Sbjct: 18  IEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTT 75

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G  CAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L R
Sbjct: 76  LTLQVIAAAQREGKVCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDSLTR 135

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+I++DSVAAL P+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ
Sbjct: 136 SGAVDVIIVDSVAALVPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQ 195

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRRVG+IK+ + + GN TRVKVVKNK+A+P
Sbjct: 196 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRVGAIKEGEMVIGNDTRVKVVKNKIAAP 255

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FKQ +F I+YGEGI+  GELIDLGVK  +V+K+G+W+S+ G ++GQG+ N   +L+ N  
Sbjct: 256 FKQADFQILYGEGINTHGELIDLGVKHQLVEKAGSWYSYNGTKIGQGKSNVTEYLKTNPS 315

Query: 323 IAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           IA  ++ +LR               +  KD  D D  D +
Sbjct: 316 IAAELDKILRNRL---------LNPVCEKDKTDLDPLDKI 346


>gi|294644659|ref|ZP_06722409.1| protein RecA [Bacteroides ovatus SD CC 2a]
 gi|292639993|gb|EFF58261.1| protein RecA [Bacteroides ovatus SD CC 2a]
          Length = 330

 Score =  343 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 199/329 (60%), Positives = 263/329 (79%), Gaps = 2/329 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K KAL+AA+ +I++ +GKG+IM++G      E +EV+ +GS+ L++ALG+GG+P+
Sbjct: 1   MASSEKLKALQAAMEKIEKSFGKGSIMKMGDDS--VEQVEVIPTGSIALNVALGVGGYPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGV++ +L ISQ
Sbjct: 59  GRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYASKLGVNIDDLYISQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++  G+QARLMSQALRKL
Sbjct: 119 PDNGEQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+++S+++   +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR    IKD + I 
Sbjct: 179 TAAVSKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQPIKDGEEIL 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G  T+VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG    I+ KSG+W+S+   +L
Sbjct: 239 GKLTKVKVVKNKVAPPFRKAEFDIMFGEGISHSGEIIDLGADLGIIKKSGSWYSYNDTKL 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNA 335
           GQGR+ +K  + +N E+AE +E L+ +  
Sbjct: 299 GQGRDAAKQCIMDNPELAEELEGLIFEEL 327


>gi|34557830|ref|NP_907645.1| recombinase A [Wolinella succinogenes DSM 1740]
 gi|60393634|sp|Q7M8Q1|RECA_WOLSU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|34483548|emb|CAE10545.1| RECA PROTEIN [Wolinella succinogenes]
          Length = 350

 Score =  343 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 210/354 (59%), Positives = 274/354 (77%), Gaps = 11/354 (3%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KA++ A+ QI + +GKGA+++LG +    E I+ +S+GSLGLDIALGIGG P+GRI+
Sbjct: 6   NKRKAIDLAIKQIDKAFGKGALVRLGEKP--VEKIDSISTGSLGLDIALGIGGIPQGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLAL  IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPD G
Sbjct: 64  EIYGPESSGKTTLALQVIAECQKKGGICAFIDAEHALDVSYAKRLGVDAENLLVSQPDYG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L RSGAVD+IV+DSVAALTP++EI+GDMG+   G+QARLMSQALRK+T  +
Sbjct: 124 EQALEILETLTRSGAVDLIVVDSVAALTPKSEIDGDMGDQHVGLQARLMSQALRKVTGVL 183

Query: 191 SRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKI  + +GSPETTTGGNALKFY+SVR+D+RR+ S+K  +   GN+
Sbjct: 184 HKMNTTVIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDVRRIASLKQGEQHIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            + KVVKNK+A PF++ EFDIM+GEGIS  GELID GVK  IVDKSG+W S+  ++LGQG
Sbjct: 244 VKAKVVKNKVAPPFREAEFDIMFGEGISQEGELIDYGVKLDIVDKSGSWLSYGDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           +EN+K FL+EN EIA  I++ +    G           I T  D D+D+++N+E
Sbjct: 304 KENAKAFLKENKEIANEIQAKIIGAIG-------SSDEITTFGD-DEDESENLE 349


>gi|78778196|ref|YP_394511.1| recombinase A [Sulfurimonas denitrificans DSM 1251]
 gi|123741066|sp|Q30P05|RECA_SULDN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|78498736|gb|ABB45276.1| RecA protein [Sulfurimonas denitrificans DSM 1251]
          Length = 345

 Score =  343 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 201/344 (58%), Positives = 260/344 (75%), Gaps = 3/344 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K K+L+ A+ QI + +GKGA+M+LG +  +   IE +S+GSLGLD+ALGIGG P+GR+
Sbjct: 3   ANKQKSLDLAMKQIDKAFGKGALMRLGDKEIM--PIESISTGSLGLDLALGIGGIPQGRV 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL   A+ QK GG CAF+DAEHALD  YA+ LGVD+ NLL+SQPD 
Sbjct: 61  VEIYGPESSGKTTLALQITAECQKAGGVCAFIDAEHALDVGYAKNLGVDVDNLLVSQPDY 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQAL+I + + RSGA+D+IVIDSVAALTP++EIEG+M +   G+QARLMS+ALRKLT  
Sbjct: 121 GEQALDIVETIARSGAIDLIVIDSVAALTPKSEIEGEMSDQNVGVQARLMSKALRKLTGI 180

Query: 190 ISRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           + +  C ++FINQ+RMKI  + +GSPETTTGGNALKFY+SVR+D+RR+ S+K  +S  GN
Sbjct: 181 LHKMNCTVIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDVRRIASLKQGESQIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + + KV+KNK+A PF+Q EFDIM+GEGIS  GEL+D GVK  I+DKSGAWFS+   +LGQ
Sbjct: 241 RVKAKVIKNKVAPPFRQAEFDIMFGEGISKEGELVDYGVKLDIIDKSGAWFSYGETKLGQ 300

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GREN K    E+  +A  IE  ++   GL     +    I   D
Sbjct: 301 GRENVKAKFMEDKVLAHEIEEKIKAAMGLGDLMTMDSLDIEDVD 344


>gi|260617889|gb|ACX47244.1| RecA [Bacillus sp. fiply 3A]
          Length = 300

 Score =  343 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 197/302 (65%), Positives = 250/302 (82%), Gaps = 2/302 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
            QI++ +GKG+IM+LG +      I  V SGSL LD ALGIGG+P+GRI+E+YGPESSGK
Sbjct: 1   KQIEKQFGKGSIMKLGEKTDTR--ISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGK 58

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TT+ALH IA+ Q+ GG  AF+DAEHALD +YA+KLGV+++ LL+SQPDTGEQALEI + L
Sbjct: 59  TTVALHAIAEVQEKGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEAL 118

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGAVDI+V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I++SK I +FI
Sbjct: 119 VRSGAVDIVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKSKTIAIFI 178

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K  + + GN+TR+KVVKNK+A
Sbjct: 179 NQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVLGNKTRIKVVKNKVA 238

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
            PF+  E DIMYGEGIS  GE+IDLG +  IV KSG+W+S++ +RLGQGREN+K FL+EN
Sbjct: 239 PPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKEN 298

Query: 321 IE 322
            +
Sbjct: 299 KD 300


>gi|317484484|ref|ZP_07943394.1| recA bacterial DNA recombination protein [Bilophila wadsworthia
           3_1_6]
 gi|316924260|gb|EFV45436.1| recA bacterial DNA recombination protein [Bilophila wadsworthia
           3_1_6]
          Length = 365

 Score =  343 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 211/366 (57%), Positives = 269/366 (73%), Gaps = 6/366 (1%)

Query: 1   MDYRKEMNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIAL 59
           M  +  +   + + +AL+ AL  I+R +G+GA+M+L     +   + V+ +GS+G+D+AL
Sbjct: 1   MAKKPTLTPEEARQEALKTALETIERKFGQGAVMKLSDD--VHVKVPVIPTGSIGVDLAL 58

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           GIGG PKGR+ EIYGPESSGKTTL LH IA+ QK GGT AF+DAEHALD  YAR+LGV  
Sbjct: 59  GIGGIPKGRVTEIYGPESSGKTTLTLHVIAECQKLGGTAAFIDAEHALDVTYARRLGVKT 118

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
             LLISQPD GEQALEI DMLVRSGAVD++VIDSVAAL P+ E+EG MGE+  G  ARLM
Sbjct: 119 DELLISQPDHGEQALEIADMLVRSGAVDLVVIDSVAALIPQTELEGAMGETQVGGHARLM 178

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIG-VMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           S ALRKLT +I +S+  ++FINQ+RMKIG   +GSPETTTGGNALKFYSSVRLDIR++ +
Sbjct: 179 SHALRKLTGTIHKSRTAVIFINQIRMKIGVTGYGSPETTTGGNALKFYSSVRLDIRKIQT 238

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           +KDK+   G+ TRVKVVKNKMA PF++ +FDI++G GIS  GELIDLGV A IVDKSGAW
Sbjct: 239 LKDKEEAYGSLTRVKVVKNKMAPPFREAKFDIIWGTGISRSGELIDLGVDAGIVDKSGAW 298

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD--DADK 356
           F+F  ++LGQG+E  +  L E  E+   IES L ++ G+    ++  P     D  +A  
Sbjct: 299 FAFGAEKLGQGKEKVRALLDETPELRNAIESQLIEHLGMNPRPVVHAPEETLPDPENAPV 358

Query: 357 DDTDNV 362
           DD D+ 
Sbjct: 359 DDMDDE 364


>gi|70904888|gb|AAZ14022.1| RecA [Burkholderia cenocepacia]
          Length = 297

 Score =  343 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 212/298 (71%), Positives = 261/298 (87%), Gaps = 1/298 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF
Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           ++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN 
Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENP 297


>gi|296802996|gb|ADH51574.1| DNA recombinase [Burkholderia cenocepacia]
          Length = 301

 Score =  342 bits (878), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 215/302 (71%), Positives = 263/302 (87%), Gaps = 1/302 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299

Query: 330 LL 331
            +
Sbjct: 300 RI 301


>gi|325145689|gb|ADY86114.1| RecA [Burkholderia sp. A-7.3]
          Length = 337

 Score =  342 bits (878), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 206/338 (60%), Positives = 256/338 (75%), Gaps = 3/338 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKAL A L+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEI
Sbjct: 1   SKALAAXLAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSG++D+IVIDSVAAL P+AEIE                            
Sbjct: 120 ALEITDALVRSGSIDMIVIDSVAALVPKAEIEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 179

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
                   NQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRV
Sbjct: 180 XXXXXXXXNQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N
Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299

Query: 313 SKIFLRENIEIAENIESLLRQNAGLVA--DSLLQEPAI 348
           ++ FLREN EIA  IE+ +R++ G+VA  D ++ E   
Sbjct: 300 AREFLRENPEIAREIENRIRESLGVVAMPDGVVDEAEA 337


>gi|283957058|ref|ZP_06374530.1| recA protein [Campylobacter jejuni subsp. jejuni 1336]
 gi|283791559|gb|EFC30356.1| recA protein [Campylobacter jejuni subsp. jejuni 1336]
          Length = 343

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 208/349 (59%), Positives = 270/349 (77%), Gaps = 10/349 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+AAL  + + +GKG I++LG +    E I+ + +GS+GLD+ALGIGG PKGRI+
Sbjct: 4   NKRKSLDAALKSLDKTFGKGTILRLGDKE--VEQIDSIGTGSVGLDLALGIGGVPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD  YA+ LGV+  +L +SQPD G
Sbjct: 62  EIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLGVNTDDLYVSQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSGAVD+IV+DSVAALTP+AEIEGDMG+   G+QARLMSQALRKLT  +
Sbjct: 122 EQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRKLTGIV 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R+V ++K  +   GN+
Sbjct: 182 HKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQNEEPIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PF+Q EFD+M+GEG+S  GELID GVK  IVDKSGAWFS+K ++LGQG
Sbjct: 242 VKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           RENSK FL+EN EIA+ I   ++ + G+       E   +  +D + ++
Sbjct: 302 RENSKAFLKENPEIADEITKAIQNSMGI-------EGMFSGSEDDEGEE 343


>gi|86141084|ref|ZP_01059643.1| RecA [Leeuwenhoekiella blandensis MED217]
 gi|85833026|gb|EAQ51475.1| RecA [Leeuwenhoekiella blandensis MED217]
          Length = 336

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 207/331 (62%), Positives = 265/331 (80%), Gaps = 3/331 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+  L ++ + YGKG +M++G    I   +E +S+GSLGLD+ALG+GG PKGRI+E
Sbjct: 8   KLKALKLTLDKMDKTYGKGTVMKMGDNAII--EVESISTGSLGLDMALGVGGLPKGRIIE 65

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA++QK GG  AF+DAEHA D  YA KLGVD++NL+ISQPD GE
Sbjct: 66  IYGPESSGKTTLTLHAIAEAQKKGGIAAFIDAEHAFDRFYADKLGVDIENLIISQPDNGE 125

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD L+RSGA+DIIV+DSVAALTP++EIEG+MG+S  G+ ARLMSQALRKLT SIS
Sbjct: 126 QALEITDNLIRSGAIDIIVVDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTGSIS 185

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQT 250
           ++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IKD +  + GN+T
Sbjct: 186 KTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKDSNGEVQGNKT 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF+Q EFDIMYGEGIS  GE++D+GV   I+ KSG+WFS++  +LGQGR
Sbjct: 246 RVKVVKNKVAPPFRQAEFDIMYGEGISKVGEILDIGVDYEIIKKSGSWFSYQDTKLGQGR 305

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           +  K  L++N ++ E +E  ++    +  ++
Sbjct: 306 DAVKAILKDNPDLLEELEVKIKDAIKIAKEA 336


>gi|303256569|ref|ZP_07342583.1| protein RecA [Burkholderiales bacterium 1_1_47]
 gi|302860060|gb|EFL83137.1| protein RecA [Burkholderiales bacterium 1_1_47]
          Length = 353

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 208/328 (63%), Positives = 267/328 (81%), Gaps = 2/328 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+   + KAL+ AL QI + +GK AI+ +GSQ    + ++VVS+GS  LD+ALG+GG P+
Sbjct: 1   MDADARKKALKMALDQISKQFGKDAILSMGSQPD--QNLDVVSTGSFTLDLALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYGPESSGKTTL LH +A+ QK GGTCAF+DAEHALD  YA+ LGV + +LL+SQ
Sbjct: 59  GRIVEIYGPESSGKTTLTLHILAEMQKLGGTCAFIDAEHALDVKYAKALGVKVDDLLLSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+GEQALEITD LVRSGAVD++VIDSVAAL PR+EIEGDMGE+LPG+QARLMSQALRKL
Sbjct: 119 PDSGEQALEITDALVRSGAVDLVVIDSVAALVPRSEIEGDMGEALPGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TSSI +S  ++VFINQ+R KIGV++GSPETTTGGNALKFY+++R+DIRR G IK  D I 
Sbjct: 179 TSSIKKSNTLVVFINQVRQKIGVVYGSPETTTGGNALKFYATIRMDIRRTGGIKQGDEIL 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFKQ EF+I+YG+GIS  GE+ID+G    I +KSGAW+S++G ++
Sbjct: 239 GNETRVKVVKNKVAPPFKQAEFEIIYGQGISREGEIIDIGTDMDIFNKSGAWYSYQGNKI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQN 334
           GQG+  ++ +L+ + E  + IE  ++  
Sbjct: 299 GQGKAAAREWLKSHPEEMKMIEEQIKAA 326


>gi|189502646|ref|YP_001958363.1| recombinase A [Candidatus Amoebophilus asiaticus 5a2]
 gi|189498087|gb|ACE06634.1| hypothetical protein Aasi_1324 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 354

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 201/330 (60%), Positives = 264/330 (80%), Gaps = 3/330 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +K KAL++ + ++++ YGKG +M+L  +  +   I  +S+GSL LD+ALGIGG P+GR
Sbjct: 4   NQEKIKALQSVIDKLEKSYGKGTVMKLSDEKVV--DIPAISTGSLSLDLALGIGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++E+YGPESSGKTTL+L  IA++QK GG  AF+DAEHA D  YA KLG+D +NL I+QPD
Sbjct: 62  VIEVYGPESSGKTTLSLQCIAEAQKQGGMAAFIDAEHAFDKNYAEKLGIDTENLYIAQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GEQALEI + L+RS A+DIIVIDSVAAL P++E+EG+MG+S  G+QARLMSQALRKLT 
Sbjct: 122 NGEQALEIAENLIRSSAIDIIVIDSVAALVPKSELEGEMGDSKMGLQARLMSQALRKLTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSITG 247
           +IS++ CI +FINQ+R KIGVMFG+PETTTGGNALKFYSSVRLDIRRV +IKD + ++ G
Sbjct: 182 AISKTGCICIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRVTTIKDAEGNMVG 241

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+TRVKVVKNK+A PFK VEFDI+YGEGIS  GE+ID+GV+  ++ KSG+WFS++G +L 
Sbjct: 242 NRTRVKVVKNKVAPPFKVVEFDILYGEGISKVGEIIDIGVELGVIQKSGSWFSYEGNKLA 301

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGL 337
           QGRE  K  L++N E+ E +E  ++    L
Sbjct: 302 QGREAVKALLKDNPELTEKLERQIKDKIQL 331


>gi|149369483|ref|ZP_01889335.1| DNA recombination protein [unidentified eubacterium SCB49]
 gi|149356910|gb|EDM45465.1| DNA recombination protein [unidentified eubacterium SCB49]
          Length = 338

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 205/335 (61%), Positives = 264/335 (78%), Gaps = 5/335 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   KE +   K KAL+  L ++ + YGKG +M++G +  +   ++V+SSGSLGLD+ALG
Sbjct: 1   MSSDKEKDA--KLKALKLTLDKLDKTYGKGTVMKMGDRQVV--EVDVISSGSLGLDVALG 56

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG+P+GR++EIYGPESSGKTTL LH IA++QK GG  AF+DAEHA D  YA  LGVD++
Sbjct: 57  VGGYPRGRVIEIYGPESSGKTTLTLHAIAEAQKKGGIAAFIDAEHAFDRYYAESLGVDIE 116

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL+ISQPD GEQALEI D L+RSGA+DI+V+DSVAALTP++EIEG+MG+S  G+ ARLMS
Sbjct: 117 NLIISQPDNGEQALEIADNLIRSGAIDIVVVDSVAALTPKSEIEGEMGDSKMGLHARLMS 176

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT SIS++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IK
Sbjct: 177 QALRKLTGSISKTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIK 236

Query: 241 D-KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           D   ++ GN+TRVKVVKNK+A PFK  EFDIMYG+GIS  GE+IDLGV   I+ K+G+WF
Sbjct: 237 DTDSNVMGNKTRVKVVKNKVAPPFKLAEFDIMYGKGISKVGEIIDLGVNFEIIRKAGSWF 296

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
           S+   +LGQGR+  K  L +N E+ + +E  ++  
Sbjct: 297 SYDETKLGQGRDAVKNLLLDNPELMDELEGKIKDA 331


>gi|34540649|ref|NP_905128.1| recombinase A [Porphyromonas gingivalis W83]
 gi|188994921|ref|YP_001929173.1| recombinase A [Porphyromonas gingivalis ATCC 33277]
 gi|37538300|sp|P77925|RECA_PORGI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238691481|sp|B2RJN1|RECA_PORG3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|34396963|gb|AAQ66027.1| recA protein [Porphyromonas gingivalis W83]
 gi|188594601|dbj|BAG33576.1| recombinase A [Porphyromonas gingivalis ATCC 33277]
          Length = 340

 Score =  342 bits (877), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 199/336 (59%), Positives = 262/336 (77%), Gaps = 4/336 (1%)

Query: 1   MDYRKEMNIVDKSK--ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIA 58
           M   K   + D+ K  AL  A  +I++ +GKGAIM +G   +  E + V+ SGS+GLD+A
Sbjct: 1   MAEEKIPTVQDEKKLQALRMATEKIEKTFGKGAIMNMG--ANTVEDVSVIPSGSIGLDLA 58

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG+GG+P+GRI+EIYGPESSGKTTLA+H IA++QK GG  A +DAEHA D  YA KLGV+
Sbjct: 59  LGVGGYPRGRIIEIYGPESSGKTTLAIHAIAEAQKAGGLAAIIDAEHAFDRTYAEKLGVN 118

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           + NL I+QPD GEQALEI + L+RS AVDIIVIDSVAALTP+AEIEG+MG++  G+ ARL
Sbjct: 119 VDNLWIAQPDNGEQALEIAEQLIRSSAVDIIVIDSVAALTPKAEIEGEMGDNKVGLHARL 178

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRK+T +IS+S    +FINQ+R KIGV+FG+PETTTGGNALKFY+S+R+DIR+   
Sbjct: 179 MSQALRKMTGAISKSNTTCIFINQLREKIGVLFGNPETTTGGNALKFYASIRIDIRKSTP 238

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IKD + I G+ T+VKV+KNK+A PF++ EFDI++GEGIS  GE+IDLGV+  I+ KSG+W
Sbjct: 239 IKDGEEIMGHLTKVKVLKNKVAPPFRKAEFDIVFGEGISRSGEIIDLGVELDIIKKSGSW 298

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
           FS+   +LGQGRE +K  +R+N E+AE +   +R+ 
Sbjct: 299 FSYGDTKLGQGREAAKEMIRDNEELAEELTEKIREA 334


>gi|303233258|ref|ZP_07319930.1| RecA protein [Atopobium vaginae PB189-T1-4]
 gi|302480648|gb|EFL43736.1| RecA protein [Atopobium vaginae PB189-T1-4]
          Length = 410

 Score =  342 bits (877), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 192/353 (54%), Positives = 260/353 (73%), Gaps = 3/353 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            ++   L+    +I++ +GKG+IM+ G  G   E +E + +G+L LD+ALGIGG P+GRI
Sbjct: 17  AERDAQLKLTTGEIEKKFGKGSIMKYGETGPDLE-VEAIPTGALSLDVALGIGGVPRGRI 75

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTL+L  +A++Q  GG  AF+DAEHALD  YA ++GVD+  +LISQP+ 
Sbjct: 76  IEIYGPESSGKTTLSLEILAEAQNLGGIVAFIDAEHALDPNYAARIGVDIDEVLISQPNN 135

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GE+ALEI DMLVRSGA+D+IVIDSVAAL PRAEI+G++G++  G+QARLMSQALRKL  S
Sbjct: 136 GEEALEICDMLVRSGAIDVIVIDSVAALVPRAEIDGEIGDTTVGLQARLMSQALRKLAGS 195

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +S+SK   +FINQ+R KIGVMFG+PETT GG ALKF+SSVRL+IRR+ ++K  + + GN+
Sbjct: 196 LSKSKTTCIFINQLREKIGVMFGNPETTPGGRALKFFSSVRLEIRRIETLKQGNDLIGNR 255

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            RV+VVKNK+A PFKQ EFDIMYG GIS  G  +D+ V   I +KSG+WFS+   RLGQG
Sbjct: 256 VRVRVVKNKVAPPFKQAEFDIMYGTGISKEGTTLDMAVDCGICEKSGSWFSYNDMRLGQG 315

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL--VADSLLQEPAINTKDDADKDDTD 360
           R+ +  +LREN ++ + I   ++   G+    D  ++  A  T   A  + +D
Sbjct: 316 RQAASTYLRENPDLLDEITKQVKIAYGIEFSDDDTMEPAAAKTHTSAGAEKSD 368


>gi|126697091|ref|YP_001091977.1| recombinase A [Prochlorococcus marinus str. MIT 9301]
 gi|166220663|sp|A3PF51|RECA_PROM0 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|126544134|gb|ABO18376.1| RecA bacterial DNA recombination protein [Prochlorococcus marinus
           str. MIT 9301]
          Length = 365

 Score =  342 bits (877), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 191/335 (57%), Positives = 263/335 (78%), Gaps = 3/335 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           ++ +K     +K KAL   L QI+R +G+G+IM+LG    +   +E +S+G+L LD+ALG
Sbjct: 3   LEEKKTTESKEKDKALSLVLGQIERNFGRGSIMRLGDASRM--KVETISTGALTLDLALG 60

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG+PKGR+VE+YGPESSGKTTL LH IA+ QK GG  AFVDAEHALD +YA  LGVD++
Sbjct: 61  -GGYPKGRVVEVYGPESSGKTTLTLHAIAEVQKNGGVAAFVDAEHALDPVYAASLGVDVE 119

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NLL+SQPDTGE ALEI D L+RS AVD++V+DSVAALTPRAEIEG+MG+ + G QARLMS
Sbjct: 120 NLLVSQPDTGEMALEIVDQLIRSSAVDLVVVDSVAALTPRAEIEGEMGDHVIGSQARLMS 179

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RK+T +I +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K
Sbjct: 180 QAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLK 239

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
                 G + +VKV KNK+A PF+  EFDI++G+GIS  G L+DL  + +I+ + GAW+S
Sbjct: 240 RGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYS 299

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
           ++G+ +GQGR+N+ I+L +N+EI   +ES++++  
Sbjct: 300 YEGENIGQGRDNTIIWLDQNLEIRNKVESMVKEKL 334


>gi|325145693|gb|ADY86116.1| RecA [Burkholderia sp. T-17.2]
          Length = 338

 Score =  342 bits (877), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 203/327 (62%), Positives = 249/327 (76%), Gaps = 1/327 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEI
Sbjct: 1   SKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSG++D+ VIDSVAAL P+AEIE                            
Sbjct: 120 ALEITDALVRSGSIDMXVIDSVAALVPKAEIEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 179

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
                   NQ+RMKIGVMFG PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRV
Sbjct: 180 XXXXXXXXNQIRMKIGVMFGXPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N
Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299

Query: 313 SKIFLRENIEIAENIESLLRQNAGLVA 339
           ++ FLREN EIA  IE+ +R++ G+ A
Sbjct: 300 AREFLRENPEIAREIENRIRESLGVAA 326


>gi|161595867|gb|ABX73527.1| recombination protein RecA [Neisseria meningitidis 053442]
          Length = 323

 Score =  342 bits (877), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 205/326 (62%), Positives = 263/326 (80%), Gaps = 3/326 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M++       E +EV+S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKTTL L  +AQ Q
Sbjct: 1   MKM-DGSQQEENLEVISTGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVAQCQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHA D +YARKLGV ++ L +SQPDTGEQALEI D LVRSG +D++V+D
Sbjct: 60  KNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGIDMVVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  I ++  ++VFINQ+RMKIGVMFG
Sbjct: 120 SVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFG 179

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           SPETTTGGNALKFYSSVRLDIRR GSIK  + + GN+TRVKV+KNK+A PF+Q EFDI+Y
Sbjct: 180 SPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNETRVKVIKNKVAPPFRQAEFDILY 239

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           GEGIS+ GELID+GVK  I++KSGAW+S+ G ++GQG++N +++L+EN EIA+ I++ +R
Sbjct: 240 GEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQGKDNVRVWLKENPEIADEIDAKIR 299

Query: 333 QNAGLVADSLLQEPAINTKDDADKDD 358
              G+  +  + E  ++  D    ++
Sbjct: 300 ALNGV--EMHITEGKLDETDGERPEE 323


>gi|313206274|ref|YP_004045451.1| reca protein [Riemerella anatipestifer DSM 15868]
 gi|312445590|gb|ADQ81945.1| recA protein [Riemerella anatipestifer DSM 15868]
 gi|315023044|gb|EFT36057.1| RecA protein [Riemerella anatipestifer RA-YM]
 gi|325336284|gb|ADZ12558.1| RecA1 [Riemerella anatipestifer RA-GD]
          Length = 343

 Score =  342 bits (877), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 212/333 (63%), Positives = 267/333 (80%), Gaps = 6/333 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
              DK KAL A L ++ + YGKG +M+LG  G++   IEV+ SGSLGLD+ALG+GG+PKG
Sbjct: 9   PNDDKKKALAAVLEKLDKTYGKGTVMKLGD-GTVDHNIEVIPSGSLGLDLALGVGGYPKG 67

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTL LH IA++QK GGT AF+DAEHA D  YA KLG++L+ L++SQP
Sbjct: 68  RIVEIYGPESSGKTTLTLHAIAEAQKVGGTAAFIDAEHAFDMHYAEKLGINLEELIVSQP 127

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI D L+RSG VDI+V+DSVAALTP+AEI+GDMG+S  G+ ARLMSQALRKLT
Sbjct: 128 DNGEQALEIADSLIRSGGVDIVVVDSVAALTPKAEIDGDMGDSKMGLHARLMSQALRKLT 187

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV----GSIKDKD 243
           SSIS++KC ++FINQ+R KIGVMFGSPETTTGGNALKFY+SVR+DIRR     G IKDK 
Sbjct: 188 SSISKTKCTVIFINQLRDKIGVMFGSPETTTGGNALKFYASVRIDIRRSLSDTGKIKDKS 247

Query: 244 -SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
             + GN+T+VKVVKNK+A PFK  EFDIMYGEG+S  GE++D+     I+ KSG+WFS++
Sbjct: 248 GEVIGNRTKVKVVKNKVAPPFKSAEFDIMYGEGVSKVGEILDVATDLDIIQKSGSWFSYQ 307

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
             +LGQGR+  K  +++N E+AE +E+ +R+  
Sbjct: 308 DTKLGQGRDTVKELIKDNPELAEELEAKIREKL 340


>gi|281490901|ref|YP_003352881.1| DNA-dependent recombination protein RecA [Lactococcus lactis subsp.
           lactis KF147]
 gi|281374659|gb|ADA64179.1| DNA-dependent recombination protein RecA, ATPase, AAA family
           [Lactococcus lactis subsp. lactis KF147]
          Length = 387

 Score =  342 bits (877), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 191/362 (52%), Positives = 262/362 (72%), Gaps = 14/362 (3%)

Query: 1   MDYRKEMNIVD--------KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGS 52
           M  +K+ N  D        + KAL  AL+ I++ +GKG++M+LG   +  + + VVSSGS
Sbjct: 1   MATKKKTNFDDITKKYGAERDKALADALALIEKDFGKGSLMRLGEAAN--QKVSVVSSGS 58

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           L LDIALG GG+PKGRIVEIYGPESSGKTT+ALH +A  QK GG  AF+DAE+ALD  YA
Sbjct: 59  LALDIALGAGGYPKGRIVEIYGPESSGKTTVALHAVAAVQKEGGIAAFIDAENALDPEYA 118

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           + LGV++  LL+SQPD GEQ L+I + L+ SGAVD++VIDSVAAL P+AEI+G++G+S  
Sbjct: 119 KALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAALVPKAEIDGEIGDSSV 178

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QAR+MSQA+RKL   I+++K   +FINQ+R K+GVMFGSPETT GG ALKFY+SVRLD
Sbjct: 179 GLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLD 238

Query: 233 IRRVGSIKDK----DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           +R    I++      +  G  T++KVVKNK+A PFK    DIM+GEGIS  GEL+++ V 
Sbjct: 239 VRGSTKIEEGSGDNKTQIGKITKIKVVKNKVAPPFKVALVDIMFGEGISRTGELLNIAVD 298

Query: 289 ASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348
             I+ KSGAWF++  +++GQG E +K +L+E+ EI + I+  +R   GL+ ++ + E   
Sbjct: 299 EGIIKKSGAWFAYNDEKIGQGAEKAKNYLKEHQEIFDEIDHKVRAAHGLLDEAEVVETTE 358

Query: 349 NT 350
           +T
Sbjct: 359 DT 360


>gi|86609411|ref|YP_478173.1| recombinase A [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557953|gb|ABD02910.1| recA protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 358

 Score =  342 bits (877), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 194/340 (57%), Positives = 257/340 (75%), Gaps = 4/340 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KALE  LSQI+R +GKGAIM+LG    +   +E + SG++ LD+ALG GG+PKGRI
Sbjct: 3   SEKRKALEQVLSQIERNFGKGAIMRLGDATQMR--VETIPSGAITLDLALG-GGYPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +E++GPESSGKT++ALH IA+ QK GGT AFVDAEHALD  YA  LGVD++NLLISQPDT
Sbjct: 60  IEVFGPESSGKTSIALHAIAEVQKQGGTAAFVDAEHALDPTYAAALGVDIQNLLISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GE ALEI D LVRS AVDI+V+DSVAAL PRAEIEGDMG++  G+QARLMSQALRK+  +
Sbjct: 120 GEAALEIVDQLVRSAAVDIVVVDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKIAGN 179

Query: 190 ISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +S++  I++F+NQ+R KIG + +G  ETTTGGNALKFY+SVRLDIRRV ++K      G 
Sbjct: 180 VSKTGSIVLFLNQLRSKIGGIGYGPQETTTGGNALKFYASVRLDIRRVQTLKKGAEEYGI 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + RVKVVKNK+A PF++ EFDI++G+GIS  G +IDL  +  I+ + G+W+S+K + + Q
Sbjct: 240 RARVKVVKNKVAPPFRRAEFDIIFGQGISNIGCIIDLADEMGILKRRGSWYSYKEENVAQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348
           GR+N  ++L+EN E+   +E+ +R+            PA 
Sbjct: 300 GRDNLVVYLKENPELLAEVEAAVREKLSAGVTVSASRPAA 339


>gi|325145701|gb|ADY86120.1| RecA [Burkholderia sp. C-19.2]
          Length = 338

 Score =  342 bits (877), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 203/327 (62%), Positives = 249/327 (76%), Gaps = 1/327 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEI
Sbjct: 1   SKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSG++D  VIDSVAAL P+AEIE                            
Sbjct: 120 ALEITDALVRSGSIDXXVIDSVAALVPKAEIEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 179

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
                   NQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRV
Sbjct: 180 XXXXXXXXNQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N
Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299

Query: 313 SKIFLRENIEIAENIESLLRQNAGLVA 339
           ++ FLREN EIA  IE+ +R++ G+ A
Sbjct: 300 AREFLRENPEIAREIENRIRESLGVAA 326


>gi|330444009|ref|YP_004376995.1| recA protein [Chlamydophila pecorum E58]
 gi|197091910|gb|ACH42162.1| RecA [Chlamydophila pecorum E58]
 gi|328807119|gb|AEB41292.1| recA protein [Chlamydophila pecorum E58]
          Length = 348

 Score =  342 bits (877), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 192/346 (55%), Positives = 263/346 (76%), Gaps = 2/346 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN+ D+ KALEAA++ I++ +G G++M LG   +  E I V+ +G+L LD+ALGIGG PK
Sbjct: 1   MNLPDRKKALEAAIAYIEKQFGSGSVMSLGKHSATHE-ISVIKTGALSLDLALGIGGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEI+GPESSGKTTLA H +A +QK GG  A++DAEHALD  YA  +GV++ +L+ISQ
Sbjct: 60  GRIVEIFGPESSGKTTLATHIVANAQKKGGIAAYIDAEHALDPSYAALIGVNVDDLMISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GE AL I ++L RSGAVD++VIDSVAAL P++E+EGD+G+   G+QAR+MSQALRKL
Sbjct: 120 PDCGEDALSIAELLARSGAVDVLVIDSVAALVPKSELEGDIGDVHVGLQARMMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI- 245
           TS+++RS+   +FINQ+R KIGV FG+PETTTGG ALKFYSS+RLDIRR+GSIK  DS  
Sbjct: 180 TSTLARSQTCAIFINQIREKIGVSFGNPETTTGGRALKFYSSIRLDIRRIGSIKSNDSSD 239

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+ +VKV KNK+A PFK  EFDI++ EGIS  G ++DL V+ +I++K G+WF+++ ++
Sbjct: 240 IGNRIKVKVAKNKLAPPFKVAEFDILFNEGISSAGCILDLAVERNIIEKKGSWFNYQDKK 299

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           LGQGRE  +  L++N ++   +E  L + +       L++ A  T 
Sbjct: 300 LGQGREFVREELKKNPKLFAELEKRLTEESPKAPTESLEDSASQTA 345


>gi|325145695|gb|ADY86117.1| RecA [Burkholderia sp. T-22.5]
          Length = 338

 Score =  342 bits (877), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 203/327 (62%), Positives = 250/327 (76%), Gaps = 1/327 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEI
Sbjct: 1   SKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL L  IA+ QK GG  AF+DAEHALD  YA KLGV++  LLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLTLQVIAELQKLGGXAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSG++D+IVIDSVAAL P+AEIE                            
Sbjct: 120 ALEITDALVRSGSIDMIVIDSVAALVPKAEIEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 179

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
                   NQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRV
Sbjct: 180 XXXXXXXXNQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N
Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299

Query: 313 SKIFLRENIEIAENIESLLRQNAGLVA 339
           ++ FLREN EIA  IE+ +R++ G+ A
Sbjct: 300 AREFLRENPEIAREIENRIRESLGVAA 326


>gi|170077054|ref|YP_001733692.1| recombinase A [Synechococcus sp. PCC 7002]
 gi|132240|sp|P14582|RECA_SYNP2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|154602|gb|AAA88636.1| recA [Synechococcus sp.]
 gi|169884723|gb|ACA98436.1| recA protein (recombinase A) [Synechococcus sp. PCC 7002]
          Length = 348

 Score =  342 bits (877), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 185/346 (53%), Positives = 251/346 (72%), Gaps = 4/346 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  DK KAL   L+QI+R +GKGAIM+LG    +   +  + SG+L LD A+G GGFP+G
Sbjct: 6   NNPDKEKALNLVLNQIERNFGKGAIMRLGDAAQM--KVATIPSGALTLDQAMG-GGFPRG 62

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD  Y+  LGVD++NLL++QP
Sbjct: 63  RIVEIYGPESSGKTTVALHAIAEVQKAGGVAAFIDAEHALDPTYSAALGVDIENLLVAQP 122

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GE ALEI D LVRS AVD+IVIDSVAAL PRAEIEG+MG+   G+QARLMS+ALRK+ 
Sbjct: 123 DNGESALEIADQLVRSAAVDLIVIDSVAALVPRAEIEGEMGDVQVGLQARLMSKALRKIA 182

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-IT 246
            ++ RS C ++F+NQ+R KIG+ +G+PE TTGG ALKFY+SVRLDIRR+ ++K       
Sbjct: 183 GNMGRSGCTVIFLNQLRQKIGISYGNPEVTTGGTALKFYASVRLDIRRIQTLKKGSEGEF 242

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G + +VKV KNK+A PF+  EFDI++G+GIS  G ++DL  +  ++ + GAW+S++G  +
Sbjct: 243 GIRAKVKVAKNKVAPPFRIAEFDIIFGKGISRVGCMLDLAEQTGVITRKGAWYSYEGDNI 302

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
            QGR+N+  +L EN ++A  +   +R+N  + +     E     ++
Sbjct: 303 AQGRDNAVKYLEENPDVAAIVTQKVRENLDMSSMGFGDEHHTTEEE 348


>gi|325145705|gb|ADY86122.1| RecA [Burkholderia sp. C-30.1]
          Length = 338

 Score =  342 bits (876), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 203/327 (62%), Positives = 250/327 (76%), Gaps = 1/327 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEI
Sbjct: 1   SKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSG++D+IVIDSVAAL P+AEIE                            
Sbjct: 120 ALEITDALVRSGSIDMIVIDSVAALVPKAEIEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 179

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
                   NQ+RMK GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRV
Sbjct: 180 XXXXXXXXNQIRMKXGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N
Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299

Query: 313 SKIFLRENIEIAENIESLLRQNAGLVA 339
           ++ FLREN EIA  IE+ +R++ G+ A
Sbjct: 300 AREFLRENPEIAREIENRIRESLGVAA 326


>gi|15672336|ref|NP_266510.1| recombinase A [Lactococcus lactis subsp. lactis Il1403]
 gi|146325677|sp|P0C2U4|RECA1_LACLA RecName: Full=Protein RecA, chromosomal; AltName: Full=Recombinase
           A
 gi|12723223|gb|AAK04452.1|AE006272_6 RecA protein [Lactococcus lactis subsp. lactis Il1403]
 gi|326405935|gb|ADZ63006.1| DNA-dependent recombination protein RecA [Lactococcus lactis subsp.
           lactis CV56]
          Length = 387

 Score =  342 bits (876), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 191/362 (52%), Positives = 262/362 (72%), Gaps = 14/362 (3%)

Query: 1   MDYRKEMNIVD--------KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGS 52
           M  +K+ N  D        + KAL  AL+ I++ +GKG++M+LG   +  + + VVSSGS
Sbjct: 1   MATKKKTNFDDITKKYGAERDKALADALALIEKDFGKGSLMRLGEAAN--QKVSVVSSGS 58

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           L LDIALG GG+PKGRIVEIYGPESSGKTT+ALH +A  QK GG  AF+DAE+ALD  YA
Sbjct: 59  LALDIALGAGGYPKGRIVEIYGPESSGKTTVALHAVAAVQKEGGIAAFIDAENALDPEYA 118

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           + LGV++  LL+SQPD GEQ L+I + L+ SGAVD++VIDSVAAL P+AEI+G++G+S  
Sbjct: 119 KALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAALVPKAEIDGEIGDSSV 178

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QAR+MSQA+RKL   I+++K   +FINQ+R K+GVMFGSPETT GG ALKFY+SVRLD
Sbjct: 179 GLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLD 238

Query: 233 IRRVGSIKDK----DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           +R    I++      +  G  T++KVVKNK+A PFK    DIM+GEGIS  GEL+++ V 
Sbjct: 239 VRGSTKIEEGSGDNKTQIGKITKIKVVKNKVAPPFKVALVDIMFGEGISRTGELLNIAVD 298

Query: 289 ASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348
             I+ KSGAWF++  +++GQG E +K +L+E+ EI + I+  +R   GL+ ++ + E   
Sbjct: 299 EGIIKKSGAWFAYNDEKIGQGAEKAKNYLKEHQEIFDEIDHKVRTAHGLLDEAEVAETTE 358

Query: 349 NT 350
           +T
Sbjct: 359 DT 360


>gi|437276|gb|AAA17793.1| RecA [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 343

 Score =  342 bits (876), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 208/349 (59%), Positives = 270/349 (77%), Gaps = 10/349 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+AAL  + + +GKG I++LG +    E I+ + +GS+GLD+ALGIGG PKGRI+
Sbjct: 4   NKRKSLDAALKSLDKTFGKGTILRLGDKE--VEQIDSIGTGSVGLDLALGIGGVPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD  YA+ LGV+  +L +SQPD G
Sbjct: 62  EIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLGVNTDDLYVSQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSGAVD+IV+DSVAALTP+AEIEGDMG+   G+QARLMSQALRKLT  +
Sbjct: 122 EQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRKLTGIV 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIG M +G+PETTTGGNALK Y+SVRLD+R+V ++K  +   GN+
Sbjct: 182 HKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKIYASVRLDVRKVATLKQNEEPIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PF+Q EFD+M+GEG+S  GELID GVK  IVDKSGAWFS+K ++LGQG
Sbjct: 242 VKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           RENSK FL+EN EIA+ I   ++ + G+       E  I+  +D + ++
Sbjct: 302 RENSKAFLKENPEIADEITKAIQNSMGI-------EGMISGSEDDEGEE 343


>gi|187251927|ref|YP_001876409.1| recA protein [Elusimicrobium minutum Pei191]
 gi|186972087|gb|ACC99072.1| RecA protein [Elusimicrobium minutum Pei191]
          Length = 353

 Score =  342 bits (876), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 183/326 (56%), Positives = 262/326 (80%), Gaps = 2/326 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K+KALE A+SQI++ +GK AI++LG      + I+ +S+G+L LD+ALG+GG P+GR+
Sbjct: 3   ANKAKALELAMSQIEKSFGKEAILKLG--AGSIKKIDAISTGALSLDLALGVGGVPRGRV 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPE+ GKTTL+LH  AQ+QK+GG  AF+DAEHALD +YA  +GVD+  L +SQPD+
Sbjct: 61  IEIYGPEAGGKTTLSLHIAAQAQKSGGVVAFIDAEHALDPVYANSIGVDVDELFVSQPDS 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + LVRSGA+D+I+IDSVAAL PRAEIEG+MG++  G+QARLMSQALRKLTS 
Sbjct: 121 GEQALEIAEKLVRSGAIDLIIIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTSL 180

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++++K  ++FINQ+R KIG+MFG+PETT GG ALKFYSSVR+D+R++ ++K  D I G +
Sbjct: 181 LAKTKTSIIFINQIRQKIGIMFGNPETTPGGLALKFYSSVRIDVRKIENLKKGDEIIGTR 240

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            R KV KNK+A P++Q EF +++GEGIS    ++D+GV+A I++KSG+WF +  ++LGQG
Sbjct: 241 VRAKVTKNKVAPPYRQAEFTMLHGEGISRESCILDMGVQAGIIEKSGSWFLYGQEKLGQG 300

Query: 310 RENSKIFLRENIEIAENIESLLRQNA 335
            +N++ +L++N E+A+ +E  L++  
Sbjct: 301 ADNARQYLKDNAELAQELEDKLKEKY 326


>gi|88801769|ref|ZP_01117297.1| recombinase A [Polaribacter irgensii 23-P]
 gi|88782427|gb|EAR13604.1| recombinase A [Polaribacter irgensii 23-P]
          Length = 335

 Score =  342 bits (876), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 208/332 (62%), Positives = 265/332 (79%), Gaps = 4/332 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   KE     K KAL+  L ++ + YGKGA+M+LG    + E I+ +SSGSLGLD+ALG
Sbjct: 1   MAGDKEKQA--KLKALQLTLDKLDKTYGKGAVMKLGD--VVTEEIDAISSGSLGLDLALG 56

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG+P+GR++EIYGPESSGKTTL LH IA++QK GG  AF+DAEHA D  YA  LGVD+ 
Sbjct: 57  VGGYPRGRVIEIYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAEHAFDKFYAENLGVDID 116

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL+ISQPD GEQALEI + L+RSGA+DI+VIDSVAALTP+AEIEG+MG+S  G+ ARLMS
Sbjct: 117 NLIISQPDHGEQALEIAENLIRSGAIDIVVIDSVAALTPKAEIEGEMGDSKMGLHARLMS 176

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT +IS++KC ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IK
Sbjct: 177 QALRKLTGTISKTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRRTQIK 236

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D D + GN T+VKVVKNK+A PF+  EFDIMYG+GIS  GE++D+GV+  IV KSG+WFS
Sbjct: 237 DGDRVIGNSTKVKVVKNKVAPPFQIAEFDIMYGQGISKVGEILDIGVELGIVKKSGSWFS 296

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           +   +LGQGR+  K  +++N E+A+ +E  ++
Sbjct: 297 YGETKLGQGRDAVKGLIKDNPELADELEGKIK 328


>gi|160892128|ref|ZP_02073131.1| hypothetical protein BACUNI_04591 [Bacteroides uniformis ATCC 8492]
 gi|270296251|ref|ZP_06202451.1| RecA protein [Bacteroides sp. D20]
 gi|317480871|ref|ZP_07939952.1| recA bacterial DNA recombination protein [Bacteroides sp. 4_1_36]
 gi|156858606|gb|EDO52037.1| hypothetical protein BACUNI_04591 [Bacteroides uniformis ATCC 8492]
 gi|270273655|gb|EFA19517.1| RecA protein [Bacteroides sp. D20]
 gi|316902956|gb|EFV24829.1| recA bacterial DNA recombination protein [Bacteroides sp. 4_1_36]
          Length = 345

 Score =  342 bits (876), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 200/330 (60%), Positives = 268/330 (81%), Gaps = 2/330 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +    +   +K KAL+AA+ +I++ +GKG+IM++G +    E +EV+ +GS+GL++ALG+
Sbjct: 10  ENGSNLASGEKLKALQAAMDKIEKSFGKGSIMKMGDES--VEQVEVIPTGSIGLNVALGV 67

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+P+GRI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ N
Sbjct: 68  GGYPRGRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDN 127

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLISQPD GEQALEI + L+RS A+DIIV+DSVAALTP+AEIEGDMG++  G+QARLMSQ
Sbjct: 128 LLISQPDNGEQALEIAEQLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQ 187

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT+++S+++   +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR   +IK+
Sbjct: 188 ALRKLTAAVSKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQAIKN 247

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            D + G QT+VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG +  I+ KSG+WFS+
Sbjct: 248 GDEVIGKQTKVKVVKNKVAPPFRRAEFDIMFGEGISRAGEIIDLGAELGIIKKSGSWFSY 307

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLL 331
              ++ QGR+ +K  + +N E+AE +E L+
Sbjct: 308 NETKIAQGRDAAKQVILDNPELAEELEGLI 337


>gi|332181460|gb|AEE17148.1| Protein recA [Treponema brennaborense DSM 12168]
          Length = 397

 Score =  342 bits (876), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 208/336 (61%), Positives = 268/336 (79%), Gaps = 3/336 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           D     ++ +K KALEAA  QI++ +G G++M+LG+   +  G++V+ SGS+ LD ALGI
Sbjct: 7   DTNPPADMSEKLKALEAARLQIEKQFGTGSLMKLGTSADV-SGLDVIPSGSILLDEALGI 65

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+P+GRI+E+YGPESSGKTTLALH IA++QK GG  AF+DAEHALD IYA+ LGV++  
Sbjct: 66  GGYPRGRIIEMYGPESSGKTTLALHAIAEAQKLGGIAAFIDAEHALDPIYAKNLGVNIDE 125

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L +SQPDTGEQALEI + LVRSGAVDIIV+DSVAALTP+AEIEGDMG+S  G+QARLMSQ
Sbjct: 126 LWVSQPDTGEQALEIAESLVRSGAVDIIVVDSVAALTPQAEIEGDMGDSHMGLQARLMSQ 185

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI-- 239
           ALRKLT++I +SKCILVFINQ+RMKIGVMFG+PETTTGGNALKFYSS+RL+IRR+ SI  
Sbjct: 186 ALRKLTATIGKSKCILVFINQIRMKIGVMFGNPETTTGGNALKFYSSIRLEIRRIESIDA 245

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           K  +   GN+ RVK+VKNK+A PF++VE DI +G+G+S    L+D  VK   +DK GAWF
Sbjct: 246 KGAEDAVGNRVRVKIVKNKVAPPFRKVELDIYFGKGVSATASLLDAAVKYGFIDKKGAWF 305

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
           + + +++GQGREN+  FL +N +   +IE  LR+  
Sbjct: 306 TTETEKVGQGRENAIAFLEQNTDFTRDIEQKLREKM 341


>gi|325145699|gb|ADY86119.1| RecA [Burkholderia sp. T-22.1]
          Length = 338

 Score =  341 bits (875), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 202/327 (61%), Positives = 249/327 (76%), Gaps = 1/327 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEI
Sbjct: 1   SKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSG++D+ VIDSVAAL P+AEIE                            
Sbjct: 120 ALEITDALVRSGSIDMXVIDSVAALVPKAEIEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 179

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
                   NQ+RMKIGVMFG+P TTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRV
Sbjct: 180 XXXXXXXXNQIRMKIGVMFGNPXTTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N
Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299

Query: 313 SKIFLRENIEIAENIESLLRQNAGLVA 339
           ++ FLREN EIA  IE+ +R++ G+ A
Sbjct: 300 AREFLRENPEIAREIENRIRESLGVAA 326


>gi|229815358|ref|ZP_04445693.1| hypothetical protein COLINT_02403 [Collinsella intestinalis DSM
           13280]
 gi|229809138|gb|EEP44905.1| hypothetical protein COLINT_02403 [Collinsella intestinalis DSM
           13280]
          Length = 366

 Score =  341 bits (875), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 201/349 (57%), Positives = 260/349 (74%), Gaps = 4/349 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ K +E   + I + +G GAIM+ G  G   E +E + +G++ LD ALGIGG P+GRI+
Sbjct: 19  EREKMIEVTKADIIKKFGDGAIMRYGDGGPELE-VEAIPTGAIALDAALGIGGVPRGRII 77

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+L  +A++Q  GG  AF+DAEHALD  YA ++GVD+  +LISQPDTG
Sbjct: 78  EIYGPESSGKTTLSLEIVAEAQAMGGVAAFIDAEHALDPTYAARIGVDIDEVLISQPDTG 137

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D++VIDSVAAL PRAEIEG++GE+  G+QARLMSQALRKL  S+
Sbjct: 138 EQALEICDMLVRSGAIDVVVIDSVAALVPRAEIEGEIGETTVGLQARLMSQALRKLAGSL 197

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++S    +FINQ+R KIGVMFG+PETTTGG ALKF+SSVR+DIRR+ SIK KD I GN+ 
Sbjct: 198 AKSNTTCIFINQLREKIGVMFGNPETTTGGRALKFFSSVRIDIRRIESIKVKDEIVGNRV 257

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           R KVVKNK+A+PF+  EFDIMYG GIS  G ++D+ V+ + V K+GAWF++ G+RLGQGR
Sbjct: 258 RAKVVKNKVAAPFRTAEFDIMYGTGISKEGSVLDMAVQFNFVTKAGAWFTYDGERLGQGR 317

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           E +K  LR+  E+   +E  +R   GL       EP     DD + D +
Sbjct: 318 EAAKEKLRKTPELLAELEHKVRVACGL---EFEDEPVGTIVDDVEFDSS 363


>gi|3859862|gb|AAC72890.1| recA-like protein [Porphyromonas gingivalis]
          Length = 340

 Score =  341 bits (875), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 198/336 (58%), Positives = 261/336 (77%), Gaps = 4/336 (1%)

Query: 1   MDYRKEMNIVDKSK--ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIA 58
           M   K   + D+ K  AL  A  +I++ +GKGAIM +G   +  E + V+ SGS+GLD+A
Sbjct: 1   MAEEKIPTVQDEKKLQALRMATEKIEKTFGKGAIMNMG--ANTVEDVSVIPSGSIGLDLA 58

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG+GG+P+GRI+EIYGPESSGKTTLA+H IA++QK GG  A +DAEHA D  YA KLGV+
Sbjct: 59  LGVGGYPRGRIIEIYGPESSGKTTLAIHAIAEAQKAGGLAAIIDAEHAFDRTYAEKLGVN 118

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           + NL I+QPD GEQALEI + L+RS AVDIIVIDSVA LTP+AEIEG+MG++  G+ ARL
Sbjct: 119 VDNLWIAQPDNGEQALEIAEQLIRSSAVDIIVIDSVAGLTPKAEIEGEMGDNKVGLHARL 178

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRK+T +IS+S    +FINQ+R KIGV+FG+PETTTGGNALKFY+S+R+DIR+   
Sbjct: 179 MSQALRKMTGAISKSNTTCIFINQLREKIGVLFGNPETTTGGNALKFYASIRIDIRKSTP 238

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IKD + I G+ T+VKV+KNK+A PF++ EFDI++GEGIS  GE+IDLGV+  I+ KSG+W
Sbjct: 239 IKDGEEIMGHLTKVKVLKNKVAPPFRKAEFDIVFGEGISRSGEIIDLGVELDIIKKSGSW 298

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
           FS+   +LGQGRE +K  +R+N E+AE +   +R+ 
Sbjct: 299 FSYGDTKLGQGREAAKEMIRDNEELAEELTEKIREA 334


>gi|163754758|ref|ZP_02161880.1| DNA recombination protein [Kordia algicida OT-1]
 gi|161325699|gb|EDP97026.1| DNA recombination protein [Kordia algicida OT-1]
          Length = 335

 Score =  341 bits (875), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 205/335 (61%), Positives = 259/335 (77%), Gaps = 5/335 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   KE     K KAL+  L ++ + YGKG +M++  Q  +   ++ +SSGSLGLDIALG
Sbjct: 1   MSSDKEKEA--KLKALKLTLDKLDKTYGKGTVMKMSDQAVV--DVDAISSGSLGLDIALG 56

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG+P+GR++EIYGPESSGKTTL LH IA++QK GG  AF+DAEHA D  YA  LGVD+ 
Sbjct: 57  VGGYPRGRVIEIYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAEHAFDRFYAESLGVDID 116

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL+ISQPD GEQALEI D L+RSGA+DI+VIDSVAALTP++EIEG+MG+S  G+ ARLMS
Sbjct: 117 NLIISQPDHGEQALEIADNLIRSGAIDIVVIDSVAALTPKSEIEGEMGDSKMGLHARLMS 176

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT+SIS++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IK
Sbjct: 177 QALRKLTASISKTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIK 236

Query: 241 -DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
                + GN+TRVKVVKNK+A PFK VEFDIMYG G+S  GE++D+GV   I+ KSG+WF
Sbjct: 237 GTDGEVKGNKTRVKVVKNKVAPPFKTVEFDIMYGAGVSKVGEILDIGVNYEIIKKSGSWF 296

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
           S+   +LGQGR+  K  L +N E+ E +E  ++  
Sbjct: 297 SYGDSKLGQGRDAVKTLLEDNPELLEELEIKIKDA 331


>gi|296837417|gb|ADH59567.1| DNA recombinase [Burkholderia lata]
          Length = 301

 Score =  341 bits (875), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 215/302 (71%), Positives = 263/302 (87%), Gaps = 1/302 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ 
Sbjct: 1   IMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEL 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVI
Sbjct: 60  QKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVI 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMF
Sbjct: 120 DSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMF 179

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+
Sbjct: 180 GNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDIL 239

Query: 272 YGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLL 331
           YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ +
Sbjct: 240 YGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRI 299

Query: 332 RQ 333
           R+
Sbjct: 300 RE 301


>gi|313157806|gb|EFR57217.1| RecA protein [Alistipes sp. HGB5]
          Length = 338

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 206/335 (61%), Positives = 268/335 (80%), Gaps = 3/335 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M  + ++N  DK K L A + +I++ +GKG+IM++ SQ      + V+ +GS+ LDIALG
Sbjct: 1   MAEKVQVN-ADKLKVLNAVMEKIEKDFGKGSIMRMNSQE--VSDVPVIPTGSITLDIALG 57

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG+PKGR+VEIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA DS YA+KLGVD+ 
Sbjct: 58  VGGYPKGRVVEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDSFYAQKLGVDVD 117

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NLLISQPD GEQALEI D L+RS A+DIIVIDSVAALTP+AEIEG+MG+S  G+QARLMS
Sbjct: 118 NLLISQPDNGEQALEIADSLIRSSAIDIIVIDSVAALTPKAEIEGEMGDSKMGLQARLMS 177

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLTSSIS++K + +FINQ+R KIGV++G+PETTTGGNALKFY+SVR+DIRR+  IK
Sbjct: 178 QALRKLTSSISKTKTVCIFINQLRDKIGVVYGNPETTTGGNALKFYASVRIDIRRMSVIK 237

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D +   G +T+VKVVKNK+A PFK+ EFDIM+GEGIS  GE++DLGV   +V K+G+WFS
Sbjct: 238 DGEEQLGTRTKVKVVKNKVAPPFKRAEFDIMFGEGISKIGEIVDLGVDYGVVKKAGSWFS 297

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
           +  +++GQGR+  K  L+ + E+   IE  +R+  
Sbjct: 298 YGDRKIGQGRDAVKELLKNDEELRNEIEGKVREAM 332


>gi|166079842|gb|ABY81643.1| recombinase A [Staphylococcus simulans]
          Length = 319

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 195/321 (60%), Positives = 248/321 (77%), Gaps = 2/321 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKGA+M+LG   +           S+ LD ALG+GG+PKGRIVEIYGPESSGKTT+
Sbjct: 1   EKSFGKGAVMKLGDNKARRVSSVSSG--SVTLDNALGVGGYPKGRIVEIYGPESSGKTTV 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALH IA+ QK GG  AF+DAEHALD +YA  LGVD+ NL +SQPD GEQ LEI +  VRS
Sbjct: 59  ALHAIAEVQKQGGIAAFIDAEHALDPVYAEALGVDINNLYLSQPDHGEQGLEIAEAFVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVDIIV+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +IS+S C  +FINQ+
Sbjct: 119 GAVDIIVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAISKSNCTAIFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T++KVVKNK+A PF
Sbjct: 179 REKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRTKIKVVKNKVAPPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           +  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G R+GQG+EN K +L+E+ ++
Sbjct: 239 RVAEVDIMYGQGISKEGELIDLGVEHDIVDKSGAWYSYNGDRMGQGKENVKNYLKEHPDV 298

Query: 324 AENIESLLRQNAGLVADSLLQ 344
             +I+  LRQ  G+    + +
Sbjct: 299 KADIDQKLRQKLGIFDGDVEE 319


>gi|193213774|ref|YP_001994973.1| recombinase A [Chloroherpeton thalassium ATCC 35110]
 gi|238692684|sp|B3QSD5|RECA_CHLT3 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|193087251|gb|ACF12526.1| recA protein [Chloroherpeton thalassium ATCC 35110]
          Length = 357

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 208/325 (64%), Positives = 260/325 (80%), Gaps = 2/325 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K L  A+  +++ +GKGAIM+LG    +   + VVS+GS+ LD ALG+GG PKGRIV
Sbjct: 18  EKLKQLNLAVESLEKQFGKGAIMRLGDDAVV--QVPVVSTGSISLDYALGVGGLPKGRIV 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH IA++QK GG  AFVDAEHA D  YARKLG+D+K+LLISQP++G
Sbjct: 76  EIYGPESSGKTTLALHAIAEAQKAGGIAAFVDAEHAFDQSYARKLGIDIKSLLISQPESG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL IT+ LVRSGAVDIIV+DSVAAL P+AE+EG+MG+S  G+QARLMSQALRKLT +I
Sbjct: 136 EQALSITETLVRSGAVDIIVVDSVAALVPQAELEGEMGDSQMGLQARLMSQALRKLTGAI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S C+ +FINQ+R KIGVM+GSPETTTGG ALKFY+SVRLDIR++  IKD   I GN+T
Sbjct: 196 SKSNCVAIFINQLRDKIGVMYGSPETTTGGKALKFYASVRLDIRKIAQIKDGTEIVGNRT 255

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PFK VEFDI+YGEG+S  GELIDL V+  IV K+GAWFS++  +LGQGR
Sbjct: 256 KVKVVKNKVAPPFKTVEFDIIYGEGVSRIGELIDLAVELGIVKKAGAWFSYENDKLGQGR 315

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
           E  K  L+ +  +   I + +++  
Sbjct: 316 ETVKTLLKADEALFNKIYAQVKEQM 340


>gi|157414167|ref|YP_001485033.1| recombinase A [Prochlorococcus marinus str. MIT 9215]
 gi|166918714|sp|A8G766|RECA_PROM2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|157388742|gb|ABV51447.1| RecA DNA recombination protein [Prochlorococcus marinus str. MIT
           9215]
          Length = 365

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 190/335 (56%), Positives = 263/335 (78%), Gaps = 3/335 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           ++ +K     +K KAL   L QI+R +G+G+IM+LG    +   +E +S+G+L LD+ALG
Sbjct: 3   LEEKKTTESKEKDKALSLVLGQIERNFGRGSIMRLGDASRM--KVETISTGALTLDLALG 60

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG+PKGR+VE+YGPESSGKTTL LH IA+ QK GG  AFVDAEHALD +YA  LGVD++
Sbjct: 61  -GGYPKGRVVEVYGPESSGKTTLTLHAIAEVQKNGGVAAFVDAEHALDPVYAASLGVDVE 119

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NLL+SQPDTGE ALEI D L+RS AVD++V+DSVAALTPRAEIEG+MG+ + G QARLMS
Sbjct: 120 NLLVSQPDTGEMALEIVDQLIRSSAVDLVVVDSVAALTPRAEIEGEMGDHVIGSQARLMS 179

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RK+T +I +S C ++F+NQ+R+KIG+ +G+PETTTGGNALKFY+SVRLDIRR+ ++K
Sbjct: 180 QAMRKITGNIGKSGCTVIFLNQLRLKIGITYGNPETTTGGNALKFYASVRLDIRRIQTLK 239

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
                 G + +VKV KNK+A PF+  EFDI++G+GIS  G L+DL  + +I+ + GAW+S
Sbjct: 240 RGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYS 299

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
           ++G+ +GQGR+N+ I+L +N+EI   +ES++++  
Sbjct: 300 YEGENIGQGRDNTIIWLDQNLEIKNKVESMIKEKL 334


>gi|296803096|gb|ADH51624.1| DNA recombinase [Burkholderia contaminans]
          Length = 316

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 216/317 (68%), Positives = 266/317 (83%), Gaps = 12/317 (3%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSG-----------AWFSFKGQRLGQGRENSKIFLR 318
           I+YGEGIS  GE+IDLGV+A IVDK+G           AW+S+ G+++GQG++N++ FLR
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNVDKAGAWYSYNGEKIGQGKDNAREFLR 299

Query: 319 ENIEIAENIESLLRQNA 335
           EN EIA  IE+ +R++ 
Sbjct: 300 ENPEIAREIENRIRESL 316


>gi|300776146|ref|ZP_07086005.1| recombination protein A [Chryseobacterium gleum ATCC 35910]
 gi|300505279|gb|EFK36418.1| recombination protein A [Chryseobacterium gleum ATCC 35910]
          Length = 333

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 210/329 (63%), Positives = 264/329 (80%), Gaps = 2/329 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           NI DK KAL   L ++ + YGKG +M LG    +   IEV+ SGSLGLDIALG+GG+PKG
Sbjct: 3   NIDDKKKALALVLDKLDKTYGKGTVMTLGDDA-VDTTIEVIPSGSLGLDIALGVGGYPKG 61

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EIYGPESSGKTTL LH IA++QK GG  AF+DAEHA D  YA KLG+DL+NL+ISQP
Sbjct: 62  RIIEIYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAEHAFDRTYAAKLGIDLENLIISQP 121

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI D L+RSGA+DI+VIDSVAALTP+AEIEG+MG+S  G+ ARLMSQALRKLT
Sbjct: 122 DNGEQALEIADNLIRSGAIDIVVIDSVAALTPKAEIEGEMGDSKMGLHARLMSQALRKLT 181

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS-IKDKDSIT 246
           ++ISR+KC ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVR+DIR+  + IK  D   
Sbjct: 182 ATISRTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRIDIRKASAPIKQGDEAI 241

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G++ +VK+VKNK+A PFKQ EFDIMYGEG+S  GE++D  V   IV KSG+WFS++  +L
Sbjct: 242 GSRVKVKIVKNKVAPPFKQAEFDIMYGEGVSKVGEILDTAVDMGIVKKSGSWFSYEETKL 301

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNA 335
           GQGR+  K  LR+N ++AE +E+ +++  
Sbjct: 302 GQGRDAVKDVLRDNPDLAEELEAKIKEEM 330


>gi|124008321|ref|ZP_01693016.1| RecA protein [Microscilla marina ATCC 23134]
 gi|123986110|gb|EAY25946.1| RecA protein [Microscilla marina ATCC 23134]
          Length = 359

 Score =  341 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 202/330 (61%), Positives = 262/330 (79%), Gaps = 3/330 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  +K KAL+  L ++ + YGKG +M+L  +  +   +EV+ +GSLGLDIALG+GG P+G
Sbjct: 5   NTTEKLKALQMTLEKLDKAYGKGTVMRLSDEKVV--EVEVIPTGSLGLDIALGVGGIPRG 62

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R++EIYGPESSGKTTLA+H IA++QK GG  AFVDAEHA D  YA KLG++ +NLLISQP
Sbjct: 63  RVIEIYGPESSGKTTLAMHCIAEAQKLGGIAAFVDAEHAFDKTYAEKLGINTENLLISQP 122

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI + L+RSGA+D++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT
Sbjct: 123 DNGEQALEIAEHLIRSGAIDLMVIDSVAALVPKAEIEGEMGDSKMGLQARLMSQALRKLT 182

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT- 246
            +I+++ C  +FINQ+R KIGVMFG+PETTTGGNALKFY+S+R+DIRR+G IK+      
Sbjct: 183 GTINKTSCSCIFINQLREKIGVMFGNPETTTGGNALKFYASIRMDIRRIGQIKESADNIT 242

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK+A PFK VEFDIMYG+GIS  GE++DLGV+  I+ KSG+WFS+KG +L
Sbjct: 243 GNRTRVKVVKNKVAPPFKVVEFDIMYGQGISKVGEILDLGVELDIIKKSGSWFSYKGSKL 302

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAG 336
            QGR+  K  + +N ++ E +E  +R    
Sbjct: 303 DQGRDKVKALISDNPDLFEELEIAIRAKIN 332


>gi|257457975|ref|ZP_05623134.1| protein RecA [Treponema vincentii ATCC 35580]
 gi|257444688|gb|EEV19772.1| protein RecA [Treponema vincentii ATCC 35580]
          Length = 441

 Score =  341 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 205/352 (58%), Positives = 276/352 (78%), Gaps = 2/352 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +  +K KALEAA  QI++ +G+G++M+LGS+     GIEV+ SGS+ LD ALGIGG+P+G
Sbjct: 16  DADEKLKALEAARLQIEKEFGQGSLMKLGSKTEA-SGIEVIPSGSILLDEALGIGGYPRG 74

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EI+GPESSGKTTLALH +A++QK GG  AFVDAEHALD  YA+KLGV++  L ++QP
Sbjct: 75  RIIEIFGPESSGKTTLALHVVAEAQKRGGIAAFVDAEHALDPQYAQKLGVNIDELWVAQP 134

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEIT+ LVRSGAVD+IV+DSVAALTP+AEI+G+MG+S  G+QARLMSQALRKLT
Sbjct: 135 DAGEQALEITENLVRSGAVDVIVVDSVAALTPQAEIDGEMGDSHMGLQARLMSQALRKLT 194

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI-KDKDSIT 246
           + ISRSKCIL+FINQ+RMKIG+ +G+PETTTGGNALKFYSSVR+++R+   + KD+D   
Sbjct: 195 AIISRSKCILIFINQIRMKIGIAYGNPETTTGGNALKFYSSVRIEVRKGEVLGKDEDEAW 254

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ R+KVVKNK+A PF++VE +I++G+GIS +G L+D  VK  ++DK GAW+S+K  ++
Sbjct: 255 GNKVRIKVVKNKVAPPFRKVELEILFGKGISPYGSLLDCAVKYELIDKKGAWYSYKEDKI 314

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           GQG +N+  FL +N ++A ++E  LR         +      N +  AD  +
Sbjct: 315 GQGHDNAVKFLEDNPDVAIDLEKTLRARLFPNQKYVSSFAISNQESGADSGE 366


>gi|331000526|ref|ZP_08324197.1| RecA protein [Parasutterella excrementihominis YIT 11859]
 gi|329571290|gb|EGG52979.1| RecA protein [Parasutterella excrementihominis YIT 11859]
          Length = 367

 Score =  341 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 207/323 (64%), Positives = 265/323 (82%), Gaps = 2/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + KAL+ AL QI + +GK AI+ +GSQ    + ++VVS+GS  LD+ALG+GG P+GRIVE
Sbjct: 20  RKKALKMALDQISKQFGKDAILSMGSQPD--QNLDVVSTGSFTLDLALGVGGLPRGRIVE 77

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH +A+ QK GGTCAF+DAEHALD  YA+ LGV + +LL+SQPD+GE
Sbjct: 78  IYGPESSGKTTLTLHILAEMQKLGGTCAFIDAEHALDVKYAKALGVKVDDLLLSQPDSGE 137

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++VIDSVAAL PR+EIEGDMGE+LPG+QARLMSQALRKLTSSI 
Sbjct: 138 QALEITDALVRSGAVDLVVIDSVAALVPRSEIEGDMGEALPGLQARLMSQALRKLTSSIK 197

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S  ++VFINQ+R KIGV++GSPETTTGGNALKFY+++R+DIRR G IK  D I GN+TR
Sbjct: 198 KSNTLVVFINQVRQKIGVVYGSPETTTGGNALKFYATIRMDIRRTGGIKQGDEILGNETR 257

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PFKQ EF+I+YG+GIS  GE+ID+G    I +KSGAW+S++G ++GQG+ 
Sbjct: 258 VKVVKNKVAPPFKQAEFEIIYGQGISREGEIIDIGTDMDIFNKSGAWYSYQGNKIGQGKA 317

Query: 312 NSKIFLRENIEIAENIESLLRQN 334
            ++ +L+ + E  + IE  ++  
Sbjct: 318 AAREWLKSHPEEMKMIEEQIKAA 340


>gi|70904903|gb|AAZ14029.1| RecA [Burkholderia pyrrocinia]
          Length = 308

 Score =  341 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 214/306 (69%), Positives = 265/306 (86%), Gaps = 1/306 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           ++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK
Sbjct: 1   RMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQK 59

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GGT AF+DA HALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDS
Sbjct: 60  IGGTAAFIDAXHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDS 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           VAAL P AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+
Sbjct: 120 VAALVPXAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGN 179

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YG
Sbjct: 180 PETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYG 239

Query: 274 EGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           EGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ +R+
Sbjct: 240 EGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIRE 299

Query: 334 NAGLVA 339
           + G+VA
Sbjct: 300 SLGVVA 305


>gi|53712505|ref|YP_098497.1| recombinase A [Bacteroides fragilis YCH46]
 gi|253563464|ref|ZP_04840921.1| recombinase A [Bacteroides sp. 3_2_5]
 gi|265762668|ref|ZP_06091236.1| recA protein [Bacteroides sp. 2_1_16]
 gi|52215370|dbj|BAD47963.1| RecA [Bacteroides fragilis YCH46]
 gi|251947240|gb|EES87522.1| recombinase A [Bacteroides sp. 3_2_5]
 gi|263255276|gb|EEZ26622.1| recA protein [Bacteroides sp. 2_1_16]
          Length = 347

 Score =  341 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 199/333 (59%), Positives = 262/333 (78%), Gaps = 2/333 (0%)

Query: 3   YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
              +M   +K KAL+AA+ +I++ +GKG+IM++G +        V+ +GS+ L+ ALG+G
Sbjct: 13  DNNKMASSEKLKALQAAMDKIEKSFGKGSIMKMGEEVVEQVE--VIPTGSIALNAALGVG 70

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G+P+GRI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL
Sbjct: 71  GYPRGRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNL 130

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
            ISQPD GEQALEI + L+RS A+DIIV+DSVAALTP+AEIEGDMG++  G+QARLMSQA
Sbjct: 131 FISQPDNGEQALEIAEQLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQA 190

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           LRKLTS++S+++   +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR    IKD 
Sbjct: 191 LRKLTSAVSKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQQIKDG 250

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           + + G QT+VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG    I+ KSG+W+S+ 
Sbjct: 251 EEVIGKQTKVKVVKNKVAPPFRKAEFDIMFGEGISHSGEIIDLGADLGIIKKSGSWYSYN 310

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
             +LGQGR+ +K  + +N E+AE +E L+ +  
Sbjct: 311 DTKLGQGRDAAKQCIADNPELAEELEGLIFEKL 343


>gi|254526096|ref|ZP_05138148.1| protein RecA [Prochlorococcus marinus str. MIT 9202]
 gi|221537520|gb|EEE39973.1| protein RecA [Prochlorococcus marinus str. MIT 9202]
          Length = 365

 Score =  341 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 190/335 (56%), Positives = 263/335 (78%), Gaps = 3/335 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           ++ +K     +K KAL   L QI+R +G+G+IM+LG    +   +E +S+G+L LD+ALG
Sbjct: 3   LEEKKTTESKEKDKALSLVLGQIERNFGRGSIMRLGDASRM--KVETISTGALTLDLALG 60

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG+PKGR+VE+YGPESSGKTTL LH IA+ QK GG  AFVDAEHALD +YA  LGVD++
Sbjct: 61  -GGYPKGRVVEVYGPESSGKTTLTLHAIAEVQKNGGVAAFVDAEHALDPVYAASLGVDVE 119

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NLL+SQPDTGE ALEI D L+RS AVD++V+DSVAALTPRAEIEG+MG+ + G QARLMS
Sbjct: 120 NLLVSQPDTGEMALEIVDQLIRSSAVDLVVVDSVAALTPRAEIEGEMGDHVIGSQARLMS 179

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RK+T +I +S C ++F+NQ+R+KIG+ +G+PETTTGGNALKFY+SVRLDIRR+ ++K
Sbjct: 180 QAMRKITGNIGKSGCTVIFLNQLRLKIGITYGNPETTTGGNALKFYASVRLDIRRIQTLK 239

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
                 G + +VKV KNK+A PF+  EFDI++G+GIS  G L+DL  + +I+ + GAW+S
Sbjct: 240 RGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYS 299

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
           ++G+ +GQGR+N+ I+L +N+EI   +ES++++  
Sbjct: 300 YEGENIGQGRDNTIIWLDQNLEIKNKVESMVKEKL 334


>gi|332045372|gb|EGI81565.1| recA protein [Lacinutrix algicola 5H-3-7-4]
          Length = 334

 Score =  341 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 199/324 (61%), Positives = 258/324 (79%), Gaps = 3/324 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+  L ++ + YGKG +M++     +   +E + SGSLGLDIALG+GG+P+GR++E
Sbjct: 8   KLKALKLTLDKLDKAYGKGTVMKMSDAAVV--DVEAIPSGSLGLDIALGVGGYPRGRVIE 65

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA++QK GG  AF+DAEHA D  YA KLGVD+ NL+ISQPD GE
Sbjct: 66  IYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAEHAFDRFYAEKLGVDIDNLIISQPDNGE 125

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L+RSGA+DI+V+DSVAALTP++EIEG+MG+S  G+ ARLMSQALRKLT+SIS
Sbjct: 126 QALEIADNLIRSGAIDIVVVDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTASIS 185

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSITGNQT 250
           ++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IK     + GN+T
Sbjct: 186 KTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKSTDGEVRGNKT 245

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK  EFDIMYGEG+S  GE++D+ V+  IV KSG+WFS++  +LGQGR
Sbjct: 246 RVKVVKNKVAPPFKLAEFDIMYGEGVSKVGEILDVAVEKEIVKKSGSWFSYEDTKLGQGR 305

Query: 311 ENSKIFLRENIEIAENIESLLRQN 334
           +  K  +++N E+ + +E  +++ 
Sbjct: 306 DAVKAIIKDNPELFDELEQKIKKA 329


>gi|325145703|gb|ADY86121.1| RecA [Burkholderia sp. C-20.3]
          Length = 338

 Score =  341 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 203/327 (62%), Positives = 250/327 (76%), Gaps = 1/327 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEI
Sbjct: 1   SKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSG++D+IVIDSVAAL P+AEIE                            
Sbjct: 120 ALEITDALVRSGSIDMIVIDSVAALVPKAEIEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 179

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
                   N +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRV
Sbjct: 180 XXXXXXXXNXIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N
Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299

Query: 313 SKIFLRENIEIAENIESLLRQNAGLVA 339
           ++ FLREN EIA  IE+ +R++ G+ A
Sbjct: 300 AREFLRENPEIAREIENRIRESLGVAA 326


>gi|330836577|ref|YP_004411218.1| RecA protein [Spirochaeta coccoides DSM 17374]
 gi|329748480|gb|AEC01836.1| RecA protein [Spirochaeta coccoides DSM 17374]
          Length = 353

 Score =  341 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 202/342 (59%), Positives = 272/342 (79%), Gaps = 2/342 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M+  +  N   K  A+E+A  QI + +GKG++M+LG   +    I  + SGSL LD ALG
Sbjct: 8   MENGETPNQKQKFDAIESARQQIDKQFGKGSLMKLGDNPTNLN-IATIPSGSLLLDEALG 66

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG+P+GRIVEIYGPESSGKTTLALH IA++QK GG  AF+DAEHALD  YA+KLGVD  
Sbjct: 67  VGGYPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGIAAFIDAEHALDPGYAKKLGVDTD 126

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            L ISQPDTGEQALEI + LVRSGA+DIIV+DSVAALTP+AEIEGDMG+S  G+QARLMS
Sbjct: 127 GLWISQPDTGEQALEIVESLVRSGAMDIIVVDSVAALTPQAEIEGDMGDSHMGLQARLMS 186

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI- 239
           QALRKLT  +++S+  ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD+R++ ++ 
Sbjct: 187 QALRKLTGILAKSRTTIIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDVRKIETLS 246

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           K  D + G++ RVKVVKNK+A PF++VEFD+++GEGIS++G ++D  +K  +++KSG+W+
Sbjct: 247 KGADDVYGSRVRVKVVKNKVAPPFRKVEFDMLFGEGISYYGGIMDAALKYEMIEKSGSWY 306

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           S++G+++GQG++N+  FL  N E++  +E+ LRQ   + A  
Sbjct: 307 SYQGEKIGQGKDNAVSFLVANPEVSSELEARLRQKMFVPASE 348


>gi|150026276|ref|YP_001297102.1| recombinase A [Flavobacterium psychrophilum JIP02/86]
 gi|149772817|emb|CAL44301.1| Recombinase A [Flavobacterium psychrophilum JIP02/86]
          Length = 334

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 203/333 (60%), Positives = 266/333 (79%), Gaps = 6/333 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   KE     K KAL+  L ++ + YGKG +M++G +    E +E +SSGSLGLD+ALG
Sbjct: 1   MSTEKEA----KLKALQLTLDKLDKTYGKGTVMKMGDKA--VEEVETISSGSLGLDLALG 54

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG+P+GR++EIYGPESSGKTTL LH IA++QK GG  AF+DAEHA D  YA KLGVD++
Sbjct: 55  VGGYPRGRVIEIYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAEHAFDRSYAEKLGVDIE 114

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL+ISQPD GEQALEI + L+RSGA+DI+VIDSVAALTP++EIEG+MG+S  G+ ARLMS
Sbjct: 115 NLIISQPDNGEQALEIAENLIRSGAIDIVVIDSVAALTPKSEIEGEMGDSKMGLHARLMS 174

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT +IS++KC + FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IK
Sbjct: 175 QALRKLTGTISKTKCTVFFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIK 234

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D +++ GN+T+VKVVKNK+A PFK  EFDIMYGEG+S  GE++DL V+  ++ K+G+WFS
Sbjct: 235 DGENVLGNRTKVKVVKNKVAPPFKTAEFDIMYGEGVSKTGEILDLAVEFEVIRKAGSWFS 294

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           +   +LGQGR+  K  +++N E+A+ +E  ++ 
Sbjct: 295 YGDTKLGQGRDAVKGLIKDNPELADELEVKIKD 327


>gi|327398415|ref|YP_004339284.1| Protein recA [Hippea maritima DSM 10411]
 gi|327181044|gb|AEA33225.1| Protein recA [Hippea maritima DSM 10411]
          Length = 338

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 200/338 (59%), Positives = 258/338 (76%), Gaps = 3/338 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
              K ++L  A+S+I++++GKGA+M+LG   ++   + V+ +G L LD ALG+ G P+GR
Sbjct: 2   NDKKLQSLNMAISKIEKMFGKGALMKLGDVKAV--DVNVIPTGILSLDYALGVCGIPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYG ESSGKTTLALH IA +Q+ GG  AFVDAEHALD  YA KLGVD+ NLL+SQPD
Sbjct: 60  IIEIYGQESSGKTTLALHCIAAAQREGGLAAFVDAEHALDVYYAEKLGVDVDNLLVSQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           +GEQALEI D L+RS AVD+IV+DSVAAL P+AEIEGDMG++  G+QARLMSQALRKLT 
Sbjct: 120 SGEQALEIIDTLIRSNAVDLIVVDSVAALVPQAEIEGDMGDAHVGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS-IKDKDSITG 247
           +IS+S   ++F+NQ+RMKIGVMFG+PETTTGGNALKFYSS+R++IR+ GS IK      G
Sbjct: 180 AISKSNTSIIFLNQIRMKIGVMFGNPETTTGGNALKFYSSIRMEIRKSGSPIKQGSEAVG 239

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+ +VKVVKNK+A PFK+ EFDI+YG G+   G+L+DL V   IV+KSG+WFS+  +RLG
Sbjct: 240 NRVKVKVVKNKVAPPFKEAEFDILYGVGVDKIGDLLDLAVAHDIVEKSGSWFSYNNERLG 299

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           QGR+N+K FL+   ++ E IE  LR            E
Sbjct: 300 QGRDNAKEFLKGRGDLLEEIERKLRNELNCRPKGETNE 337


>gi|255007982|ref|ZP_05280108.1| recombinase A [Bacteroides fragilis 3_1_12]
 gi|313145698|ref|ZP_07807891.1| recombinase A [Bacteroides fragilis 3_1_12]
 gi|313134465|gb|EFR51825.1| recombinase A [Bacteroides fragilis 3_1_12]
          Length = 347

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 200/333 (60%), Positives = 262/333 (78%), Gaps = 2/333 (0%)

Query: 3   YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
              +M   +K KAL+AA+ +I++ +GKG+IM++G +        V+ +GS+ L+ ALG+G
Sbjct: 13  DNNKMASSEKLKALQAAMDKIEKSFGKGSIMKMGEEVVEQVE--VIPTGSIALNAALGVG 70

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G+P+GRI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL
Sbjct: 71  GYPRGRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNL 130

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
            ISQPD GEQALEI + L+RS A+DIIV+DSVAALTP+AEIEGDMG++  G+QARLMSQA
Sbjct: 131 FISQPDNGEQALEIAEQLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQA 190

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           LRKLTS++S+++   VFINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR    IKD 
Sbjct: 191 LRKLTSAVSKTRTTCVFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQQIKDG 250

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           + + G QT+VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG    I+ KSG+W+S+ 
Sbjct: 251 EEVIGKQTKVKVVKNKVAPPFRKAEFDIMFGEGISHSGEIIDLGADLGIIKKSGSWYSYN 310

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
             +LGQGR+ +K  + +N E+AE +E L+ +  
Sbjct: 311 DTKLGQGRDAAKQCIADNPELAEELEGLIFEKL 343


>gi|290490556|dbj|BAI79265.1| recombinase A [Tomitella biformata]
 gi|290490558|dbj|BAI79266.1| recombinase A [Tomitella biformata]
          Length = 300

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 192/302 (63%), Positives = 248/302 (82%), Gaps = 2/302 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G++M+LG +    + I V+ +GS+ LD+ALGIGGFP+GR+VEIYGPESSGKTT+ALH +A
Sbjct: 1   GSVMRLGEES--HQPIAVIPTGSIALDVALGIGGFPRGRVVEIYGPESSGKTTVALHAVA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           ++QK GG  AF+DAEHALD  YAR LGVD   LL+SQPDTGEQALEI DML+RSGA+DI+
Sbjct: 59  EAQKAGGIAAFIDAEHALDPEYARNLGVDTDALLVSQPDTGEQALEIADMLIRSGAIDIL 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+  +I+ S    +FINQ+R KIGV
Sbjct: 119 VIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMAGAINNSGTTAIFINQLREKIGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+TRVKVVKNK+A PFKQ EFD
Sbjct: 179 MFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAIGNRTRVKVVKNKVAPPFKQAEFD 238

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           I+YG+GIS  G L+D+GV+   V KSG+W++++G +LGQG++N++ +L E+I++ + IE 
Sbjct: 239 ILYGQGISKEGSLVDMGVEQGFVRKSGSWYTYEGDQLGQGKDNARKYLLEHIDVRDEIEK 298

Query: 330 LL 331
            +
Sbjct: 299 KI 300


>gi|158336682|ref|YP_001517856.1| recombinase A [Acaryochloris marina MBIC11017]
 gi|158306923|gb|ABW28540.1| protein RecA [Acaryochloris marina MBIC11017]
          Length = 356

 Score =  340 bits (871), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 196/340 (57%), Positives = 256/340 (75%), Gaps = 4/340 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M      N  +K KAL   L+QI+R +GKG+IM+LG    +   +E +SSG+L LD+ALG
Sbjct: 1   MATDNSTN-SEKDKALGVVLNQIERTFGKGSIMRLGDATQM--KVETISSGALTLDLALG 57

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG PKGR++EIYGPESSGKTTLALH IA+ Q++GG  AFVDAEHALD  YA  LGVD +
Sbjct: 58  -GGLPKGRVIEIYGPESSGKTTLALHAIAEVQRSGGIAAFVDAEHALDPTYASALGVDTE 116

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NLL++QPDTGE ALEI D LVRS AVDI+VIDSVAAL PRAEIEGDMG+S  G+QARLMS
Sbjct: 117 NLLVAQPDTGESALEIVDQLVRSTAVDIVVIDSVAALVPRAEIEGDMGDSHMGLQARLMS 176

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRK+T +I R+ C +VF+NQ+R KIGV +G+PE TTGGNALKFY+SVRLDIRR+ ++K
Sbjct: 177 QALRKITGNIGRTGCTVVFLNQLRQKIGVTYGNPEVTTGGNALKFYASVRLDIRRIQTLK 236

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
                 G + +VKVVKNK+A PF+  EFDI++G+GIS  G L+D+  +  I+ + GAW+S
Sbjct: 237 KGTEEFGIRAKVKVVKNKVAPPFRIGEFDIIFGQGISTLGCLLDMAEETDILVRKGAWYS 296

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           + G+ +GQGR+N+  ++++N E  E++   +R      A+
Sbjct: 297 YNGENIGQGRDNTVRYMKDNPEFTESLTQQVRAKLDTGAE 336


>gi|54633816|gb|AAV36018.1| RecA [Burkholderia sp. KBC-2]
          Length = 308

 Score =  340 bits (871), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 213/299 (71%), Positives = 262/299 (87%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
             E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF
Sbjct: 1   AAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAF 60

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           +DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+
Sbjct: 61  IDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPK 120

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
           AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGG
Sbjct: 121 AEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGG 180

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           NALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  G
Sbjct: 181 NALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQG 240

Query: 281 ELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           E+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ +R++ G+VA
Sbjct: 241 EIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIRESLGVVA 299


>gi|189501101|ref|YP_001960571.1| recombinase A [Chlorobium phaeobacteroides BS1]
 gi|189496542|gb|ACE05090.1| recA protein [Chlorobium phaeobacteroides BS1]
          Length = 350

 Score =  340 bits (871), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 209/345 (60%), Positives = 265/345 (76%), Gaps = 6/345 (1%)

Query: 1   MDYRK---EMNIVD--KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGL 55
           MD +K   E    D  K K L  A+  +++ +GKGAIM LG QG+I   ++ VS+GS+ L
Sbjct: 1   MDTKKNVQEKKTADPAKLKQLSLAVETLEKQFGKGAIMCLGDQGAII-PVQSVSTGSIAL 59

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D ALG+GGFP+GR+ EIYGPESSGKTTLALH IA++QK GG  A VDAEHA D  YA+KL
Sbjct: 60  DFALGVGGFPRGRVTEIYGPESSGKTTLALHAIAEAQKGGGIAAMVDAEHAFDQTYAKKL 119

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           G+D+ +LL+SQP++GEQAL I + LVRSGAVDI+V+DSVAAL P+AE+EG+MG+S+ G+Q
Sbjct: 120 GLDIGSLLVSQPESGEQALSIVETLVRSGAVDIVVVDSVAALVPQAELEGEMGDSVMGLQ 179

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           ARLMSQALRKLT +IS+S  +++FINQ+R KIGV++G+PETTTGG ALKFYSSVRL+IR+
Sbjct: 180 ARLMSQALRKLTGAISKSSAVVIFINQLRDKIGVVYGNPETTTGGKALKFYSSVRLEIRK 239

Query: 236 VGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           +  IKD   I GN+T+VKVVKNK+A PFK VEFDI+YGEGIS  GELIDL V+  IV K+
Sbjct: 240 IAQIKDGAEIIGNRTKVKVVKNKVAPPFKIVEFDILYGEGISVLGELIDLAVEFGIVKKA 299

Query: 296 GAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           GAWFS+   +LGQGRE  K  LRE+  +   I   +R+      D
Sbjct: 300 GAWFSYDSDKLGQGREAVKKTLREDSALLSTIRKQVREMMNPSPD 344


>gi|229269495|ref|YP_210849.2| recombinase A [Bacteroides fragilis NCTC 9343]
          Length = 347

 Score =  340 bits (871), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 199/333 (59%), Positives = 262/333 (78%), Gaps = 2/333 (0%)

Query: 3   YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
              +M   +K KAL+AA+ +I++ +GKG+IM++G +        V+ +GS+ L+ ALG+G
Sbjct: 13  DNNKMASSEKLKALQAAMDKIEKSFGKGSIMKMGEEVVEQVE--VIPTGSIALNAALGVG 70

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G+P+GRI+EIYGPESSGKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL
Sbjct: 71  GYPRGRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNL 130

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
            ISQPD GEQALEI + L+RS A+DIIV+DSVAALTP+AEIEGDMG++  G+QARLMSQA
Sbjct: 131 FISQPDNGEQALEIAEQLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQA 190

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           LRKLTS++S+++   +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR    IKD 
Sbjct: 191 LRKLTSAVSKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQQIKDG 250

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           + + G QT+VKVVKNK+A PF++ EFDIM+GEGIS  GE+IDLG    I+ KSG+W+S+ 
Sbjct: 251 EEVIGKQTKVKVVKNKVAPPFRKAEFDIMFGEGISHSGEIIDLGADLGIIKKSGSWYSYN 310

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
             +LGQGR+ +K  + +N E+AE +E L+ +  
Sbjct: 311 DTKLGQGRDAAKQCIADNPELAEELEGLIFEKL 343


>gi|328865278|gb|EGG13664.1| recombinase A [Dictyostelium fasciculatum]
          Length = 451

 Score =  340 bits (871), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 192/347 (55%), Positives = 258/347 (74%), Gaps = 2/347 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LEA + +I++ +GKG +M+LGSQ ++   ++V+ +GSLGLD+ALG+GG PKGRI+EI+GP
Sbjct: 88  LEATMKEIEQTFGKGTLMKLGSQFTL-SKVDVIPTGSLGLDVALGVGGLPKGRIIEIFGP 146

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLALH IAQ+QK GG C F+DAEHAL+  +A+KLGV+L  L +SQPD+GEQALE
Sbjct: 147 ESSGKTTLALHVIAQAQKVGGNCTFIDAEHALNPSWAQKLGVNLDELFVSQPDSGEQALE 206

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L+RS  + +IV+DSVAAL PR E++G+MG+S  G+ ARLMSQALRKL+ S+  S C
Sbjct: 207 IVDSLLRSKTMQVIVVDSVAALVPRVELDGEMGDSHVGVHARLMSQALRKLSPSLKESNC 266

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           +L+FINQ+R+KIGVMFG+PETTTGGNALKF+SSVRLDIR+VG++K  D     Q +VKV 
Sbjct: 267 VLIFINQIRIKIGVMFGNPETTTGGNALKFFSSVRLDIRKVGAVKKGDETIATQVKVKVA 326

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK+A PF++  FDI +  GI+  GE+ID+ +   I++K G+W+S+ G++L QGRE +K 
Sbjct: 327 KNKLAPPFREAIFDIDFASGINKTGEIIDMALLEGIIEKGGSWYSYNGEQLAQGREKTKQ 386

Query: 316 FLRENIEIAENIESLLRQNAGLVAD-SLLQEPAINTKDDADKDDTDN 361
            L EN  + E IE+ LRQ                   + AD  + DN
Sbjct: 387 HLEENRPLLEEIETKLRQRLVKGPTRQDDDNDDNIDDESADVYNEDN 433


>gi|311350349|gb|ADP92373.1| recombinase [Burkholderia multivorans]
 gi|311350353|gb|ADP92375.1| recombinase [Burkholderia multivorans]
 gi|311350357|gb|ADP92377.1| recombinase [Burkholderia multivorans]
 gi|311350359|gb|ADP92378.1| recombinase [Burkholderia multivorans]
 gi|311350361|gb|ADP92379.1| recombinase [Burkholderia multivorans]
 gi|311350363|gb|ADP92380.1| recombinase [Burkholderia multivorans]
 gi|311350365|gb|ADP92381.1| recombinase [Burkholderia multivorans]
 gi|311350367|gb|ADP92382.1| recombinase [Burkholderia multivorans]
          Length = 295

 Score =  340 bits (871), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 214/296 (72%), Positives = 261/296 (88%), Gaps = 1/296 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIY
Sbjct: 1   KALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQA
Sbjct: 60  GPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+
Sbjct: 120 LEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRT 179

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVK
Sbjct: 180 NCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVK 239

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           VVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG
Sbjct: 240 VVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQG 295


>gi|311350339|gb|ADP92368.1| recombinase [Burkholderia vietnamiensis]
          Length = 295

 Score =  340 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 214/296 (72%), Positives = 261/296 (88%), Gaps = 1/296 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIY
Sbjct: 1   KALAAALAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQA
Sbjct: 60  GPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+
Sbjct: 120 LEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRT 179

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVK
Sbjct: 180 NCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVK 239

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           VVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG
Sbjct: 240 VVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQG 295


>gi|169335003|ref|ZP_02862196.1| hypothetical protein ANASTE_01409 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257741|gb|EDS71707.1| hypothetical protein ANASTE_01409 [Anaerofustis stercorihominis DSM
           17244]
          Length = 353

 Score =  340 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 204/351 (58%), Positives = 268/351 (76%), Gaps = 10/351 (2%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K MN  DK KALE A+  I+  +GKGA+M+LG + ++   I+ +S+ S+ LD ALG+GG 
Sbjct: 7   KVMN-PDKEKALELAMRNIESNFGKGAVMKLGDKPAVT--IDAISTSSISLDAALGVGGL 63

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GRI+E+YGPESSGKTT+ALH +A++QK GG  AF+DAEHALD IYA  LGV++  L++
Sbjct: 64  PRGRIIEVYGPESSGKTTVALHVVAEAQKAGGVAAFIDAEHALDPIYAEALGVNIDELIV 123

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEIT+ LVRS AVD++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALR
Sbjct: 124 SQPDTGEQALEITEALVRSAAVDVVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALR 183

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KL  +I++S    VFINQ+R K+G+MFG+PE T GG ALKFYSSVRL++RR+ SIK+   
Sbjct: 184 KLAGAINKSNTTAVFINQLREKVGIMFGNPEVTPGGRALKFYSSVRLEVRRIDSIKNGQE 243

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           I GN+T+VKVVKNK+A PFK  EFDIMYG+GIS  G+++D+  K  I+ K+GAW+S+  +
Sbjct: 244 IIGNRTKVKVVKNKVAPPFKIAEFDIMYGKGISREGDIVDMAAKYGIIKKAGAWYSYNDE 303

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           ++GQGR+ +K FL +N EIAE+IE        LV D +L        + AD
Sbjct: 304 KIGQGRDKAKQFLADNPEIAEHIEK-------LVLDEVLGRNKEEEPESAD 347


>gi|289548826|ref|YP_003473814.1| recA protein [Thermocrinis albus DSM 14484]
 gi|289182443|gb|ADC89687.1| recA protein [Thermocrinis albus DSM 14484]
          Length = 332

 Score =  339 bits (870), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 183/325 (56%), Positives = 241/325 (74%), Gaps = 2/325 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +K KALE+ L+ I+R +GKGAIM L +   +   +E + +GS+ LDIA G+GG P+GR
Sbjct: 4   TEEKKKALESVLASIERKFGKGAIMPLKNAERVV--VEAIPTGSIALDIATGVGGIPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVE++GPESSGKTTLALH IA++QK GG   F+DAEHALD  YA K+GVD + L ISQPD
Sbjct: 62  IVELFGPESSGKTTLALHVIAEAQKNGGVAVFIDAEHALDPRYAEKIGVDTERLFISQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GEQALEI + L+ SGAVD+IV+DSVAAL P+ E+EG M +   G QARLMSQALRKL  
Sbjct: 122 YGEQALEIAESLLSSGAVDVIVVDSVAALVPKDELEGSMEDIHVGKQARLMSQALRKLKG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
              ++   ++FINQ+R KIGVM+G+PETT GG ALKF++ +RLDIR+VG +K+ D   G+
Sbjct: 182 LAHKANAAVIFINQLREKIGVMYGNPETTPGGRALKFFADMRLDIRKVGDLKEGDGKVGS 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + RV++VKNK+A PF++ EFD++YGEGI    +LID   +  I+ KSGAW+S+   RLGQ
Sbjct: 242 RVRVRIVKNKLAPPFQEAEFDVIYGEGICKLCDLIDTATQYGIIKKSGAWYSYGDVRLGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333
           GR+  K FL+EN  + E IE  LR+
Sbjct: 302 GRDQVKKFLQENPTLTEEIEKKLRE 326


>gi|261885362|ref|ZP_06009401.1| recombinase A [Campylobacter fetus subsp. venerealis str. Azul-94]
          Length = 345

 Score =  339 bits (870), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 217/347 (62%), Positives = 269/347 (77%), Gaps = 6/347 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+ AL QI + +GKG +++LG +    E I+ +SSGS+GLDIALGIGG PKGRIV
Sbjct: 4   NKKKSLDLALKQIDKAFGKGTVLRLGDKE--IEPIDSISSGSIGLDIALGIGGVPKGRIV 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+SQK GG CAFVDAEHALD  YA+ LGVD  NL ISQPD G
Sbjct: 62  EIYGPESSGKTTLTLHLIAESQKVGGVCAFVDAEHALDVKYAKNLGVDTDNLYISQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL+I + L RSGAVD+IVIDSVAALTP++EIEGDMG+   G+QARLMSQALRKLT  +
Sbjct: 122 EQALDIVETLARSGAVDLIVIDSVAALTPKSEIEGDMGDQHVGLQARLMSQALRKLTGVV 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    +VFINQ+RMKIG M +G+PETTTGGNALKFY+SVRL++R++ ++K  D   GN+
Sbjct: 182 HKMGTTVVFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLNVRKIATLKQIDEPIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            ++KVVKNK+A PF+Q EFDIM+GEGIS  GE+ID GVK  I+DKSGAWFS+   +LGQG
Sbjct: 242 VKIKVVKNKVAPPFRQTEFDIMFGEGISKEGEIIDYGVKLDIIDKSGAWFSYDNSKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           RENSK FL+EN  IA+ I   +R N G   DS++       + + D+
Sbjct: 302 RENSKAFLKENKAIADEITEKIRANMG---DSIMSGAVDEEEMEGDE 345


>gi|325183181|emb|CCA17639.1| protein recA putative [Albugo laibachii Nc14]
          Length = 717

 Score =  339 bits (870), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 205/360 (56%), Positives = 263/360 (73%), Gaps = 11/360 (3%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
                DKS AL  A+ QI+  +GKG++MQLGS   I E +EV+S+GSL LD ALGIGG P
Sbjct: 356 NKEHSDKSNALAMAIRQIESSFGKGSVMQLGS-AKIAERVEVISTGSLSLDYALGIGGLP 414

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGG-TCAFVDAEHALDSIYARKLGVDLKNLLI 124
           +GRIVEIYGPESSGKTTLAL  IAQ+QK  G  CAF+DAEHA+D+ YA  LGV+++ L +
Sbjct: 415 RGRIVEIYGPESSGKTTLALSCIAQAQKKDGAVCAFIDAEHAIDAHYANALGVNIEELYV 474

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD+GEQALEITD L+RSGAVD++V+DSVAAL PRAE+EG+MG+    +QARLMSQALR
Sbjct: 475 SQPDSGEQALEITDTLIRSGAVDLVVLDSVAALVPRAELEGEMGDQQIALQARLMSQALR 534

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT S+S+S C L+F+NQ+R K+GV+FGSPE T+GG AL++Y+SVRLDIRR   IK  D+
Sbjct: 535 KLTGSLSKSNCTLIFLNQIRHKVGVIFGSPEVTSGGTALRYYASVRLDIRRQTQIKQGDA 594

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF--K 302
           I GN+T VKV KNK+ASPFK   FD++YG+GI    EL+DLG    ++++SGAW+S    
Sbjct: 595 IIGNETVVKVAKNKLASPFKIARFDMIYGKGIDRMSELLDLGTLHGLINRSGAWYSLIEN 654

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
              +GQGR  +K FL  + +IA+ IE  LR         L +EP +   D    +D+  V
Sbjct: 655 EAPMGQGRAKAKAFLELHEDIAKKIEQSLRGK-------LFEEPTLTEIDQEAVEDSAEV 707


>gi|311350371|gb|ADP92384.1| recombinase [Burkholderia cepacia ATCC 25416]
 gi|311350373|gb|ADP92385.1| recombinase [Burkholderia cepacia]
 gi|311350375|gb|ADP92386.1| recombinase [Burkholderia cepacia]
 gi|311350377|gb|ADP92387.1| recombinase [Burkholderia cepacia]
 gi|311350379|gb|ADP92388.1| recombinase [Burkholderia cepacia]
 gi|311350381|gb|ADP92389.1| recombinase [Burkholderia cepacia]
 gi|311350383|gb|ADP92390.1| recombinase [Burkholderia cepacia]
          Length = 295

 Score =  339 bits (870), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 213/296 (71%), Positives = 260/296 (87%), Gaps = 1/296 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIY
Sbjct: 1   KALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQA
Sbjct: 60  GPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+
Sbjct: 120 LEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRT 179

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVK
Sbjct: 180 NCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVK 239

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           VVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG
Sbjct: 240 VVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQG 295


>gi|311350387|gb|ADP92392.1| recombinase [Burkholderia cenocepacia]
 gi|311350389|gb|ADP92393.1| recombinase [Burkholderia cenocepacia]
 gi|311350391|gb|ADP92394.1| recombinase [Burkholderia cenocepacia]
 gi|311350393|gb|ADP92395.1| recombinase [Burkholderia arboris]
          Length = 295

 Score =  339 bits (870), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 214/296 (72%), Positives = 260/296 (87%), Gaps = 1/296 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIY
Sbjct: 1   KALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQA
Sbjct: 60  GPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+
Sbjct: 120 LEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRT 179

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVK
Sbjct: 180 NCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVK 239

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           VVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG
Sbjct: 240 VVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQG 295


>gi|296803016|gb|ADH51584.1| DNA recombinase [Burkholderia cenocepacia]
          Length = 300

 Score =  339 bits (870), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 214/301 (71%), Positives = 262/301 (87%), Gaps = 1/301 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+
Sbjct: 1   SIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IV
Sbjct: 60  LQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM
Sbjct: 120 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 179

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI
Sbjct: 180 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 239

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
           +YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ 
Sbjct: 240 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 299

Query: 331 L 331
           +
Sbjct: 300 I 300


>gi|126046689|gb|ABN73104.1| RecA [Burkholderia seminalis]
          Length = 299

 Score =  339 bits (870), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 213/300 (71%), Positives = 261/300 (87%), Gaps = 1/300 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ Q
Sbjct: 1   MRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVID
Sbjct: 60  KLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG
Sbjct: 120 SVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFG 179

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+Y
Sbjct: 180 NPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILY 239

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           GEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ +R
Sbjct: 240 GEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIR 299


>gi|311350399|gb|ADP92398.1| recombinase [Burkholderia metallica]
          Length = 295

 Score =  339 bits (870), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 214/296 (72%), Positives = 260/296 (87%), Gaps = 1/296 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIY
Sbjct: 1   KALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQA
Sbjct: 60  GPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+
Sbjct: 120 LEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRT 179

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVK
Sbjct: 180 NCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVK 239

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           VVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG
Sbjct: 240 VVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQG 295


>gi|169134997|gb|ACA48494.1| RecA [Burkholderia sp. 'isolate BCCU7']
          Length = 299

 Score =  339 bits (870), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 214/300 (71%), Positives = 261/300 (87%), Gaps = 1/300 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ Q
Sbjct: 1   MRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVID
Sbjct: 60  KLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG
Sbjct: 120 SVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFG 179

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+Y
Sbjct: 180 NPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILY 239

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           GEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ +R
Sbjct: 240 GEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIR 299


>gi|254375250|ref|ZP_04990730.1| recombinase A [Francisella novicida GA99-3548]
 gi|151572968|gb|EDN38622.1| recombinase A [Francisella novicida GA99-3548]
          Length = 360

 Score =  339 bits (870), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 210/348 (60%), Positives = 274/348 (78%), Gaps = 4/348 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           + K KALE+ALSQI++ +GKGAIM+LG Q +    I+V+ SG + LD+ALGIGG+PKGRI
Sbjct: 1   MSKEKALESALSQIEKQFGKGAIMRLGDQEAAH-DIDVIPSGIIALDVALGIGGYPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYG ESSGKTTL L  IAQ QK GGT AFVDAEHALD  YA+ LGVD+ NL++SQPDT
Sbjct: 60  IEIYGHESSGKTTLTLLAIAQCQKQGGTAAFVDAEHALDPKYAKLLGVDVDNLIVSQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSG VDI+VIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT++
Sbjct: 120 GEQALEIADMLVRSGGVDIVVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTAN 179

Query: 190 ISRSKCILVFINQMRMKIGVMF-GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           I RS  +++FINQ+RMKIGVMF  +   +TGGN LK YS +RL++++ GSIKD   ++GN
Sbjct: 180 IKRSNTLVIFINQIRMKIGVMFGNNRNYSTGGNTLKVYSPIRLEVKKGGSIKDGIDVSGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + +VKVVKNK+A PFKQ +F+++YGEGIS   ELIDLG K +I++KSGAW+S+KG+++GQ
Sbjct: 240 EIKVKVVKNKVAPPFKQADFELIYGEGISLEAELIDLGAKYNIIEKSGAWYSYKGKKIGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           G+E SK +L+EN    + IE  + +   L+ +    + + ++  +  K
Sbjct: 300 GKEKSKEYLKENTAERDEIERAILEL--LLPNKYPNKDSNDSPKEGSK 345


>gi|87126813|gb|ABD21327.1| recombinase A protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202553|gb|ABD30363.1| recombination protein RecA, putative [Staphylococcus aureus subsp.
           aureus NCTC 8325]
          Length = 322

 Score =  339 bits (869), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 196/325 (60%), Positives = 251/325 (77%), Gaps = 3/325 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG    I   +   S+GS+ LD ALG+GG+PKGRI+EIYGPESSGKTT+ALH IA+ Q
Sbjct: 1   MKLGDN--IGRRVSTTSTGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIAEVQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
             GG  AF+DAEHALD  YA+ LGVD+ NL +SQPD GEQ LEI +  VRSGAVDI+V+D
Sbjct: 59  SNGGVAAFIDAEHALDPEYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVD 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +IS+S    +FINQ+R K+GVMFG
Sbjct: 119 SVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETT GG ALKFYSSVRL++RR   +K    I GN+T++KVVKNK+A PF+  E DIMY
Sbjct: 179 NPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRTKIKVVKNKVAPPFRVAEVDIMY 238

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           G+GIS  GELIDLGV+  IVDKSGAW+S+ G+R+GQG+EN K++L+EN +I E I+  LR
Sbjct: 239 GQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGKENVKMYLKENPQIKEEIDRKLR 298

Query: 333 QNAGLVADSLLQEPAINTKDDADKD 357
           +  G+ +D  ++E     K   D++
Sbjct: 299 EKLGI-SDGDVEETEDAPKSLFDEE 322


>gi|169134993|gb|ACA48492.1| RecA [Burkholderia sp. 'isolate BCCU5']
          Length = 299

 Score =  339 bits (869), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 214/300 (71%), Positives = 261/300 (87%), Gaps = 1/300 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ Q
Sbjct: 1   MRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVID
Sbjct: 60  KLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG
Sbjct: 120 SVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFG 179

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+Y
Sbjct: 180 NPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILY 239

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           GEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ +R
Sbjct: 240 GEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIR 299


>gi|283953712|ref|ZP_06371243.1| RecA [Campylobacter jejuni subsp. jejuni 414]
 gi|283794753|gb|EFC33491.1| RecA [Campylobacter jejuni subsp. jejuni 414]
          Length = 342

 Score =  339 bits (869), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 207/328 (63%), Positives = 263/328 (80%), Gaps = 3/328 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+L+AAL  + + +GKG I++LG +    E I+ + +GS+GLD+ALGIGG PKGRI+
Sbjct: 4   NKRKSLDAALKSLDKTFGKGTILRLGDKE--VEQIDSIGTGSVGLDLALGIGGVPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD  YA+ LGV+  +L +SQPD G
Sbjct: 62  EIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLGVNTDDLYVSQPDFG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSGAVD+IV+DSVAALTP+AEIEGDMG+   G+QARLMSQALRKLT  +
Sbjct: 122 EQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRKLTGIV 181

Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R+V ++K  +   GN+
Sbjct: 182 HKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQNEEPIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PFKQ EFD+M+GEG+S  GELID GVK  IVDKSGAWFS+K ++LGQG
Sbjct: 242 VKVKVVKNKVAPPFKQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
           RENSK FL+EN EIA+ I   ++ + G+
Sbjct: 302 RENSKAFLKENAEIADEITKAIQDSMGI 329


>gi|291531884|emb|CBK97469.1| protein RecA [Eubacterium siraeum 70/3]
          Length = 419

 Score =  339 bits (868), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 190/352 (53%), Positives = 262/352 (74%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+ A+ QI + YG+GA+M LG +G+    +E V +GS+GLD ALGIGG PKGRI+
Sbjct: 21  EKKKALDTAMEQIIKNYGQGAVMFLGGEGNKKLDVESVPTGSIGLDYALGIGGLPKGRII 80

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPES GKTT+ LH IA++QK GG  AF+D EHALD +YA+ LGVD+ +L++SQPDTG
Sbjct: 81  EIYGPESGGKTTVTLHAIAETQKLGGMAAFIDVEHALDPVYAKSLGVDIDHLIVSQPDTG 140

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L RSGA+DI+V+DSVAA+  +AEI+G++G+S  G+QARLMS A+RKLTS I
Sbjct: 141 EQALEIMETLARSGAIDIVVLDSVAAMVTKAEIDGEIGDSFVGVQARLMSAAMRKLTSVI 200

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S  + +FINQ+R KIGVM+G+PETT GG ALKFY+SVR+++R+   I D   I G  T
Sbjct: 201 SKSNTVAIFINQVREKIGVMYGNPETTPGGRALKFYASVRIEVRKGEKIVDGGEIIGYTT 260

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           + KVVKNK+A PFK+ +FD+++GEGIS  GE+I +G +   + KSGAW+S+ G+RLGQG+
Sbjct: 261 KCKVVKNKVAPPFKETQFDMIFGEGISRLGEIITMGEELGFIKKSGAWYSYNGERLGQGK 320

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           E +K FL+EN ++   IE  +++N   +  S  ++       D  +   +N 
Sbjct: 321 EKTKKFLKENDDLRLEIEGKIKENMSKLDMSASEDGEGTDNADTSESAAENE 372


>gi|89897825|ref|YP_514935.1| recombinase A [Chlamydophila felis Fe/C-56]
 gi|123735935|sp|Q256J8|RECA_CHLFF RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|89331197|dbj|BAE80790.1| mediator of ATP dependent DNA homologous recombination
           [Chlamydophila felis Fe/C-56]
          Length = 350

 Score =  339 bits (868), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 185/345 (53%), Positives = 261/345 (75%), Gaps = 2/345 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN+ D+ KALEAA++ I++ +G G+IM LG   +  E I  + +G+L LD+ALGIGG PK
Sbjct: 1   MNVPDRKKALEAAIAYIEKQFGSGSIMSLGKHSATHE-ISTIKTGALSLDLALGIGGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEI+GPESSGKTTLA H +A +QK GG  A++DAEHALD  YA  +G ++ +L+ISQ
Sbjct: 60  GRIVEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPGYASLIGANINDLMISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GE AL I ++L RSGAVD+IVIDSVAAL P++E+EGD+G+   G+QAR+MSQALRKL
Sbjct: 120 PDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGDIGDVHVGLQARMMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI- 245
           T++++RS+   +FINQ+R KIGV FG+PETTTGG ALKFYSS+R+DIRR+G+IK  +S  
Sbjct: 180 TATLARSQTCAIFINQIREKIGVSFGNPETTTGGRALKFYSSIRIDIRRIGAIKGNESFD 239

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+ +VKV KNK+A PF+  EFDI++ EGIS  G ++DL V+ +IV+K G+WF+++ ++
Sbjct: 240 LGNRIKVKVAKNKLAPPFRTAEFDILFNEGISSAGCILDLAVEHNIVEKKGSWFNYQDRK 299

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           LGQGRE  +  L++N ++ + +E  +     +   ++++E     
Sbjct: 300 LGQGREAVREELKKNKKLFDELEKRILDVTSVPKATVVEEKKEEQ 344


>gi|166079838|gb|ABY81641.1| recombinase A [Staphylococcus warneri]
          Length = 320

 Score =  339 bits (868), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 193/321 (60%), Positives = 249/321 (77%), Gaps = 2/321 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKGA+M+LG               S+ LD ALG+GG+PKGRI+EIYGPESSGKTT+
Sbjct: 1   EKSFGKGAVMKLGDNKGRRVSSTSSG--SVTLDNALGVGGYPKGRIIEIYGPESSGKTTV 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALH IA++QK GG  AF+DAEHALD +YA+ LGVD+ NL +SQPD GEQ LEI +  VRS
Sbjct: 59  ALHAIAETQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +IS+S    +FINQ+
Sbjct: 119 GAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAISKSNTTAIFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T++KVVKNK+A PF
Sbjct: 179 REKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRTKIKVVKNKVAPPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           +  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G+R+GQG+EN K +L+EN +I
Sbjct: 239 RVAEVDIMYGQGISKEGELIDLGVENEIVDKSGAWYSYNGERMGQGKENVKTYLKENPQI 298

Query: 324 AENIESLLRQNAGLVADSLLQ 344
            + I+  LR+  G+    + +
Sbjct: 299 KDEIDQKLREKLGIFDGDVDE 319


>gi|194334750|ref|YP_002016610.1| recombinase A [Prosthecochloris aestuarii DSM 271]
 gi|194312568|gb|ACF46963.1| recA protein [Prosthecochloris aestuarii DSM 271]
          Length = 349

 Score =  339 bits (868), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 206/330 (62%), Positives = 261/330 (79%), Gaps = 3/330 (0%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
            KEM+   K K L  A+  +++ +GKG IM+LG    +   ++V+S+GS+ LD ALG+GG
Sbjct: 10  NKEMDPA-KLKQLNLAMETLEKQFGKGVIMRLGDAAVM--PVQVISTGSIALDFALGVGG 66

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
           FPKGR+VEIYGPESSGKTTLALH IA++QK GG  A VDAEHA D  YARKLGVD+  LL
Sbjct: 67  FPKGRVVEIYGPESSGKTTLALHAIAEAQKLGGVAAMVDAEHAFDQAYARKLGVDINALL 126

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQP++GEQAL I + LVRSGAVDI+V+DSVAAL P+AE+EG+MG+S+ G+QARLMSQAL
Sbjct: 127 VSQPESGEQALSIVETLVRSGAVDIVVVDSVAALVPQAELEGEMGDSVMGLQARLMSQAL 186

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT +IS+S  + VFINQ+R KIGV++G+PETTTGG ALKFYSSVRL+IR+   IKD  
Sbjct: 187 RKLTGAISKSSSVAVFINQLRDKIGVVYGNPETTTGGKALKFYSSVRLEIRKTAQIKDGV 246

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            I GN+T+VKVVKNK+A PFK VEFDI+YGEGIS  GELIDL V+  IV K+GAWFS++ 
Sbjct: 247 DIIGNRTKVKVVKNKVAPPFKTVEFDILYGEGISVMGELIDLAVEFGIVKKAGAWFSYES 306

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           ++LGQGRE  K   RE+ E+   I+  +++
Sbjct: 307 EKLGQGREAVKKAFREDQELYSRIQQQVKE 336


>gi|228470742|ref|ZP_04055593.1| protein RecA [Porphyromonas uenonis 60-3]
 gi|228307599|gb|EEK16595.1| protein RecA [Porphyromonas uenonis 60-3]
          Length = 358

 Score =  339 bits (868), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 186/352 (52%), Positives = 249/352 (70%), Gaps = 5/352 (1%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KALE  + +IQ+ +GKGAIM +       E + V+ SGSL LDIALG+GG+P+GRI+EI+
Sbjct: 2   KALETTMGRIQKQFGKGAIMNMADDA--VEDVSVIPSGSLTLDIALGVGGYPRGRIIEIF 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTLA+H IA++QK GG  A +DAEHA D  YA+ LGVD+  L ISQPD GEQA
Sbjct: 60  GPESSGKTTLAIHAIAEAQKLGGIAAIIDAEHAFDPTYAQALGVDISRLWISQPDDGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           L+I + L+RS AVDI+V+DSVAALTP+AEIEG+MG++  G+ ARLMS+A+RK+T+++SRS
Sbjct: 120 LDIAEQLIRSSAVDILVVDSVAALTPKAEIEGEMGDTQVGLHARLMSRAMRKITAAVSRS 179

Query: 194 KCILVFINQMRMKIGVMFGSP---ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           K   +FINQ+RMKIG  +      E TTGGNALKFYSSVRLDIR    IK  D + G  T
Sbjct: 180 KTCCIFINQLRMKIGNGYSPTGPSEVTTGGNALKFYSSVRLDIRAYKQIKKGDDVVGKVT 239

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
            V+VVKNK+A PF++ +FDI++G+GI+  GE+ID      I+ KSG+WFS++G  +GQGR
Sbjct: 240 SVRVVKNKVAPPFRRAQFDILFGQGINRVGEIIDAATDMGILKKSGSWFSYQGNNIGQGR 299

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           +  K  L +N E+A+ +   +           L + A   ++    D TD +
Sbjct: 300 DAVKELLDDNPELADEVAQQVMDQLAHEGKLHLSQDADEGEEGEAPDTTDQL 351


>gi|166079849|gb|ABY81646.1| recombinase A [Staphylococcus auricularis]
          Length = 313

 Score =  339 bits (868), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 191/315 (60%), Positives = 242/315 (76%), Gaps = 2/315 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           +++ +GKGA+M+LG               S+ LD ALG+GG+PKGRI+EIYGPESSGKTT
Sbjct: 1   LEKSFGKGAVMKLGDNKGRRVSSTSSG--SVTLDNALGVGGYPKGRIIEIYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ QK  G  AF+DAEHALD  YA  LGVD+ NL +SQPD GEQ LEI +  VR
Sbjct: 59  VALHAIAEVQKKDGVAAFIDAEHALDPEYAEALGVDIDNLYLSQPDHGEQGLEIAEAFVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVDIIV+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +IS+S    +FINQ
Sbjct: 119 SGAVDIIVVDSVAALTPKAEIEGEMGDAHVGLQARLMSQALRKLSGAISKSNTTAIFINQ 178

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    + GN+T++KVVKNK+A P
Sbjct: 179 IREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEVVGNRTKLKVVKNKVAPP 238

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           F+  E DIMYGEGIS  GELIDLGV+  I++KSGAW+S+  +R+GQG+EN K +L+EN E
Sbjct: 239 FRTAEVDIMYGEGISKEGELIDLGVENDIINKSGAWYSYNNERMGQGKENVKTYLKENPE 298

Query: 323 IAENIESLLRQNAGL 337
           +   IE  LR+  G+
Sbjct: 299 VRSEIEHKLREALGI 313


>gi|315064610|gb|ADT78389.1| RecA [Yersinia entomophaga]
          Length = 307

 Score =  339 bits (868), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 201/303 (66%), Positives = 255/303 (84%), Gaps = 2/303 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKGAIM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGAIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D + G++T
Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDVVVGSET 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A+PFKQ EF I+YGEGI+  GEL+DLGVK  +++K+GAW+S+ G ++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303

Query: 311 ENS 313
            N+
Sbjct: 304 ANA 306


>gi|296837415|gb|ADH59566.1| DNA recombinase [Burkholderia lata]
          Length = 297

 Score =  339 bits (868), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 212/298 (71%), Positives = 260/298 (87%), Gaps = 1/298 (0%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           + +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL 
Sbjct: 1   KQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLT 59

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG
Sbjct: 60  LQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSG 119

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           ++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+R
Sbjct: 120 SIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIR 179

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGVMFG+PETTTGGNALKFYSS RLDIRR+GSIK  D + GN+TRVKVVKNK++ PF+
Sbjct: 180 MKIGVMFGNPETTTGGNALKFYSSGRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFR 239

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           +  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E
Sbjct: 240 EAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 297


>gi|281356694|ref|ZP_06243185.1| recA protein [Victivallis vadensis ATCC BAA-548]
 gi|281316821|gb|EFB00844.1| recA protein [Victivallis vadensis ATCC BAA-548]
          Length = 360

 Score =  339 bits (868), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 194/360 (53%), Positives = 258/360 (71%), Gaps = 1/360 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M  ++  N + K K+LE A+SQI++ +GKG+IM+LG  G+    +  +S+GS+ LD+ALG
Sbjct: 1   MADKEARNNISKDKSLEIAISQIEKEFGKGSIMRLGDTGAAMTDVVAISTGSMALDLALG 60

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG P GRIVEI+GPESSGKTT+ LH IA +Q  GG CA +DAEHA+D  YA+K+GVD+ 
Sbjct: 61  IGGVPAGRIVEIFGPESSGKTTVCLHVIANAQAKGGKCAIIDAEHAIDPGYAKKIGVDID 120

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NLLISQP+ GE AL I D LVR+ A+D++VIDSVAAL P+AEIEG+MG+S  G+QARLMS
Sbjct: 121 NLLISQPNCGEDALNICDTLVRTNAIDVLVIDSVAALVPKAEIEGEMGDSHVGLQARLMS 180

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT + SRSK  ++F NQ+R KIGVMFG+PETT GGNALKFY+S+R+DIR+   IK
Sbjct: 181 QALRKLTGAASRSKTCIIFTNQIREKIGVMFGNPETTPGGNALKFYASIRMDIRKTTVIK 240

Query: 241 D-KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           D   +I GN+ RVKV+KNKMA PF+  EFDIMY EGIS  G L+D+     I++K G+WF
Sbjct: 241 DPAGNIIGNRARVKVIKNKMAPPFRVAEFDIMYNEGISKAGSLLDVATDMGILEKRGSWF 300

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           S  G++LGQGR+ +K  +  + E+ + +   +         S   E    + + A   + 
Sbjct: 301 SLDGEQLGQGRDQTKALIAASPELQQKLMDRINAKIKGGEASAPMELPEESAEPAPAPEA 360


>gi|268609959|ref|ZP_06143686.1| recA protein [Ruminococcus flavefaciens FD-1]
          Length = 396

 Score =  339 bits (868), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 193/357 (54%), Positives = 261/357 (73%), Gaps = 2/357 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K     DK  AL+ AL QI++ YG GAIM+LG   ++   ++ + +GS+ LD+ALGIGG 
Sbjct: 14  KAATKEDKKTALDGALKQIEKKYGAGAIMRLGQTKTL--NVDAIPTGSMTLDMALGIGGV 71

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GRIVEIYGPESSGKTT+AL  IAQ+QK  G  AF+D EHALD +YA+ LGV+++NLL+
Sbjct: 72  PRGRIVEIYGPESSGKTTVALSIIAQAQKMDGEVAFIDVEHALDPVYAQALGVNIENLLV 131

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD+GEQALEI + L+RSGA+D+IV+DS+AA+T RAEI+G+MG+   G  ARLMSQA+R
Sbjct: 132 SQPDSGEQALEIAEALIRSGAIDVIVLDSIAAMTTRAEIDGEMGDLHVGQLARLMSQAMR 191

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT++IS+S C+ +FINQ+R KIGVM+G+PETT GG ALKFYSSVR+++R+   IK    
Sbjct: 192 KLTAAISKSNCVAIFINQIREKIGVMYGNPETTPGGRALKFYSSVRIEVRKGEVIKSGTD 251

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           I G  TR K+VKNK+A PFK+ EFD+MYG GIS  GE++DL V   I+ K G+WFS+K Q
Sbjct: 252 IVGASTRCKIVKNKVAPPFKECEFDLMYGSGISRTGEVLDLAVDLDIIKKGGSWFSYKDQ 311

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           +LGQGR+N K  L+ +  + + IE  +      + +S+  +     KD A+    + 
Sbjct: 312 KLGQGRDNVKELLKNDEALMKEIEEQILARKDELKESVAPKGKKGKKDGAEDAPAEE 368


>gi|297748780|gb|ADI51326.1| Reca [Chlamydia trachomatis D-EC]
 gi|297749660|gb|ADI52338.1| Reca [Chlamydia trachomatis D-LC]
          Length = 386

 Score =  339 bits (868), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 184/350 (52%), Positives = 259/350 (74%), Gaps = 2/350 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M++ D+ +ALEAA++ I++ +G G+IM LG   S  E I  + +G+L LD+ALGIGG PK
Sbjct: 35  MSVPDRKRALEAAIAYIEKQFGAGSIMSLGKHSSAHE-ISTIKTGALSLDLALGIGGVPK 93

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEI+GPESSGKTTLA H +A +QK GG  A++DAEHALD  YA  +G ++ +L+ISQ
Sbjct: 94  GRIVEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPNYAALIGANINDLMISQ 153

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GE AL I ++L RSGAVD+IVIDSVAAL P++E+EG++G+   G+QAR+MSQALRKL
Sbjct: 154 PDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGEIGDVHVGLQARMMSQALRKL 213

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI- 245
           T++++R+    +FINQ+R KIGV FG+PETTTGG ALKFYSS+R+DIRR+GSIK  ++  
Sbjct: 214 TATLARTNTCAIFINQIREKIGVSFGNPETTTGGRALKFYSSIRIDIRRIGSIKGGENFD 273

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+ +VKV KNK+A PF+  EFDI++ EGIS  G +IDL V+ +I+DK G+WF+++ ++
Sbjct: 274 IGNRIKVKVAKNKLAPPFRTAEFDILFNEGISSAGCIIDLAVEKNIIDKKGSWFNYQDRK 333

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           LGQGRE  +  L+ N E+   +E  + ++               +++ A+
Sbjct: 334 LGQGREAVREELKRNKELFHELERRIYESVQASQVPAAACVDAESREVAE 383


>gi|169134995|gb|ACA48493.1| RecA [Burkholderia sp. 'isolate BCCU6']
          Length = 299

 Score =  338 bits (867), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 214/300 (71%), Positives = 261/300 (87%), Gaps = 1/300 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ Q
Sbjct: 1   MRMGD-GEAKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVID
Sbjct: 60  KLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG
Sbjct: 120 SVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFG 179

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+Y
Sbjct: 180 NPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILY 239

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           GEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ +R
Sbjct: 240 GEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIR 299


>gi|160947500|ref|ZP_02094667.1| hypothetical protein PEPMIC_01434 [Parvimonas micra ATCC 33270]
 gi|158446634|gb|EDP23629.1| hypothetical protein PEPMIC_01434 [Parvimonas micra ATCC 33270]
          Length = 381

 Score =  338 bits (867), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 197/366 (53%), Positives = 256/366 (69%), Gaps = 7/366 (1%)

Query: 3   YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
           + +  +  ++ KAL  AL +I++ +GKG IM++G    +   IE +S+G++ LDIALGIG
Sbjct: 9   FERIEDKDERKKALSIALEKIEKDFGKGIIMRMGDAPKV--NIESISTGAMNLDIALGIG 66

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G PKGRIVEIYGPESSGKTTL LH IA+SQK GG  AF+DAEHALD  YARKLGVD+ NL
Sbjct: 67  GIPKGRIVEIYGPESSGKTTLTLHIIAESQKAGGVAAFIDAEHALDPEYARKLGVDVDNL 126

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           LISQPDTGEQAL I + LVRS  +D++++DSVAAL PRAEIEG+MG+S  G+ ARLMSQA
Sbjct: 127 LISQPDTGEQALAIVEALVRSSGIDLVIVDSVAALVPRAEIEGNMGDSHMGLHARLMSQA 186

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFG----SPETTTGGNALKFYSSVRLDIRRVGS 238
           LRKL   IS+S   +VFINQ+R  I           ETTTGG ALKFY+SVR+DIRR   
Sbjct: 187 LRKLAGIISKSNTTVVFINQLRSNISTNPYAGGGPAETTTGGRALKFYASVRIDIRRAEQ 246

Query: 239 IKDKD-SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           +K  D    G +T+VKVVKNKMA PFK  EFDI++GEGIS  G ++D+    +I+ KSGA
Sbjct: 247 LKQGDGEPYGAKTKVKVVKNKMAPPFKTCEFDIIFGEGISKLGIIVDMAADKNIIKKSGA 306

Query: 298 WFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           W+S    +LGQG+E +KI+L E+    E I+  + ++ G+  +       + T +  DK+
Sbjct: 307 WYSCGDIKLGQGKEKAKIYLEEHPAFLEEIKEKIYKSYGIEYEKKDVPKEVETINLTDKE 366

Query: 358 DTDNVE 363
             D+ E
Sbjct: 367 IEDSEE 372


>gi|113476296|ref|YP_722357.1| recombinase A [Trichodesmium erythraeum IMS101]
 gi|123056586|sp|Q111E0|RECA_TRIEI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|110167344|gb|ABG51884.1| RecA protein [Trichodesmium erythraeum IMS101]
          Length = 360

 Score =  338 bits (867), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 191/328 (58%), Positives = 252/328 (76%), Gaps = 3/328 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +  +K KAL++ L  I++ +GKG+I++LG    +   +E +SSG+L LD+ALG GG PKG
Sbjct: 6   DNKEKQKALDSVLKTIEKTFGKGSIVRLGDATRM--KVETISSGALTLDLALG-GGLPKG 62

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R++EIYGPESSGKTTLALH IA++QK+GG  AFVDAEHALD  YA  LGVD++NLL+SQP
Sbjct: 63  RVIEIYGPESSGKTTLALHAIAETQKSGGIAAFVDAEHALDPTYAAALGVDIENLLVSQP 122

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGE ALE+ D LVRS AVDI+V+DSVAAL PRAEIEGDMG+S  G+QARLMSQALRK+T
Sbjct: 123 DTGEMALEVVDHLVRSVAVDIVVVDSVAALVPRAEIEGDMGDSHMGLQARLMSQALRKIT 182

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            +I +S C +VF+NQ+R KIGV++G+PETTTGGNALKFY+SVRLDIRR  ++K      G
Sbjct: 183 GNIGKSGCTVVFLNQLRQKIGVVYGNPETTTGGNALKFYASVRLDIRRTQTLKKSSEEYG 242

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
              +VKV KNK+A PF+  EFDI++G+GIS  G +IDL  +  ++ + GAW+S++G    
Sbjct: 243 IHAKVKVAKNKVAPPFRVAEFDIIFGKGISNVGCIIDLAEETDVIKRKGAWYSYQGSNFA 302

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNA 335
           QGRE +  ++  NI+ A+ IE  +R + 
Sbjct: 303 QGREKAIAYMESNIDFAKKIEKQVRDHL 330


>gi|551877|gb|AAA25216.1| recA [Lactococcus lactis]
          Length = 365

 Score =  338 bits (867), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 189/356 (53%), Positives = 260/356 (73%), Gaps = 14/356 (3%)

Query: 1   MDYRKEMNIVD--------KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGS 52
           M  +K+ N  D        + KAL  AL+ I++ +GKG++M+LG   +  + + VVSSGS
Sbjct: 1   MATKKKTNFDDITKKYGAERDKALADALALIEKDFGKGSLMRLGEAAN--QKVSVVSSGS 58

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           L LDIALG GG+PKGRIVEIYGPESSGKTT+ALH +A  QK GG  AF+DAE+ALD  YA
Sbjct: 59  LALDIALGAGGYPKGRIVEIYGPESSGKTTVALHAVAAVQKEGGIAAFIDAENALDPEYA 118

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           + LGV++  LL+SQPD GEQ L+I + L+ SGAVD++VIDSVAAL P+AEI+G++G+S  
Sbjct: 119 KALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAALVPKAEIDGEIGDSSV 178

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QAR+MSQA+RKL   I+++K   +FINQ+R K+GVMFGSPETT GG ALKFY+SVRLD
Sbjct: 179 GLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLD 238

Query: 233 IRRVGSIKDK----DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           +R    I++      +  G  T++KVVKNK+A PFK    DIM+GEGIS  GEL+++ V+
Sbjct: 239 VRGSTKIEEGSGDNKTQIGKITKIKVVKNKVAPPFKVALVDIMFGEGISSTGELLNIAVE 298

Query: 289 ASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
             I+ KSGAWF++  +++GQG E +K +L+E+ ++ + I+  +R   GL+ DS + 
Sbjct: 299 EGIIKKSGAWFAYNDEKIGQGAEKAKNYLKEHQDVFDEIDHKVRAAHGLLDDSEVA 354


>gi|169827199|ref|YP_001697357.1| recombinase A [Lysinibacillus sphaericus C3-41]
 gi|168991687|gb|ACA39227.1| Protein recA (Recombinase A) [Lysinibacillus sphaericus C3-41]
          Length = 329

 Score =  338 bits (867), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 198/309 (64%), Positives = 250/309 (80%), Gaps = 2/309 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG +  +   I   SSGSL LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH IA+ Q
Sbjct: 1   MKLGEKTDL--EIATSSSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEVQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
             GG  AF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI + LVRSGA+DIIVID
Sbjct: 59  AKGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ SI++SK I +FINQ+R KIGVMFG
Sbjct: 119 SVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGSINKSKTIAIFINQIREKIGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETT GG ALKFYSSVRL++RR  +IK  + I GN+T++K+VKNK+A PF+  E DIMY
Sbjct: 179 NPETTPGGRALKFYSSVRLEVRRAEAIKQGNDIVGNRTKIKIVKNKVAPPFRTAEVDIMY 238

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           GEGIS  GE +DLGV+  IV KSG+W+++  +RLGQGREN+K +L+EN  + E+I + +R
Sbjct: 239 GEGISKEGETVDLGVELDIVQKSGSWYAYGDERLGQGRENAKQYLKENPAVLEDISNKIR 298

Query: 333 QNAGLVADS 341
            + G+ A S
Sbjct: 299 SSYGIAASS 307


>gi|166079847|gb|ABY81645.1| recombinase A [Staphylococcus hominis]
          Length = 320

 Score =  338 bits (867), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 193/322 (59%), Positives = 247/322 (76%), Gaps = 2/322 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKGA+M+LG               S+ LD ALG+GG+PKGRI+EIYGPESSGKTT+
Sbjct: 1   EKSFGKGAVMKLGDNKGRRVSSVSSG--SVTLDNALGVGGYPKGRIIEIYGPESSGKTTV 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALH IA+ QK GG  AF+DAEHALD +YA  LGVD+ NL +SQPD GEQ LEI +  VRS
Sbjct: 59  ALHAIAEVQKNGGVAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHGEQGLEIAEAFVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVDI+V+DSVAALTP+AEIEG+MG +  G+QARLMSQALRKL+ +IS+S    +FINQ+
Sbjct: 119 GAVDIVVVDSVAALTPKAEIEGEMGGTHVGLQARLMSQALRKLSGAISKSNTTAIFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T++KVVKNK+A PF
Sbjct: 179 REKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRTKIKVVKNKVAPPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           +  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G+R+GQG+EN K +L+EN +I
Sbjct: 239 RIAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGKENVKTYLKENPQI 298

Query: 324 AENIESLLRQNAGLVADSLLQE 345
            + I+  LR+  G+    + ++
Sbjct: 299 KDEIDRKLREKLGIFDGDVEEK 320


>gi|146325679|sp|P0C2U5|RECA_LACLC RecName: Full=Protein RecA; AltName: Full=Recombinase A
          Length = 387

 Score =  338 bits (867), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 189/356 (53%), Positives = 260/356 (73%), Gaps = 14/356 (3%)

Query: 1   MDYRKEMNIVD--------KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGS 52
           M  +K+ N  D        + KAL  AL+ I++ +GKG++M+LG   +  + + VVSSGS
Sbjct: 1   MATKKKTNFDDITKKYGAERDKALADALALIEKDFGKGSLMRLGEAAN--QKVSVVSSGS 58

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           L LDIALG GG+PKGRIVEIYGPESSGKTT+ALH +A  QK GG  AF+DAE+ALD  YA
Sbjct: 59  LALDIALGAGGYPKGRIVEIYGPESSGKTTVALHAVAAVQKEGGIAAFIDAENALDPEYA 118

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           + LGV++  LL+SQPD GEQ L+I + L+ SGAVD++VIDSVAAL P+AEI+G++G+S  
Sbjct: 119 KALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAALVPKAEIDGEIGDSSV 178

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QAR+MSQA+RKL   I+++K   +FINQ+R K+GVMFGSPETT GG ALKFY+SVRLD
Sbjct: 179 GLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLD 238

Query: 233 IRRVGSIKDK----DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           +R    I++      +  G  T++KVVKNK+A PFK    DIM+GEGIS  GEL+++ V+
Sbjct: 239 VRGSTKIEEGSGDNKTQIGKITKIKVVKNKVAPPFKVALVDIMFGEGISSTGELLNIAVE 298

Query: 289 ASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
             I+ KSGAWF++  +++GQG E +K +L+E+ ++ + I+  +R   GL+ DS + 
Sbjct: 299 EGIIKKSGAWFAYNDEKIGQGAEKAKNYLKEHQDVFDEIDHKVRAAHGLLDDSEVA 354


>gi|218885979|ref|YP_002435300.1| recombinase A [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|226737755|sp|B8DP00|RECA_DESVM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|218756933|gb|ACL07832.1| recA protein [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 357

 Score =  338 bits (867), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 204/358 (56%), Positives = 269/358 (75%), Gaps = 4/358 (1%)

Query: 1   MDYRKEMNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIAL 59
           M  +  +   + + +AL  ALS I+R YG+G++M+L     +   I V+ +GS+GLD+AL
Sbjct: 1   MAKKPALTPEEMRREALSTALSTIERKYGQGSVMKLSDTAHV--NIPVIPTGSIGLDLAL 58

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           G+GG P+GR+ EIYGPESSGKTTLALH IA+ QK GGT AF+DAEHALD+ YAR+LGV  
Sbjct: 59  GVGGIPRGRVSEIYGPESSGKTTLALHIIAECQKLGGTAAFIDAEHALDTNYARRLGVKT 118

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
             LLISQPD GEQAL+I DMLVRS AVDI+VIDSVAAL P+AE+EG MGE   G QARLM
Sbjct: 119 DELLISQPDFGEQALDIADMLVRSSAVDIVVIDSVAALIPQAELEGVMGEMQVGGQARLM 178

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGS 238
           S ALRKLT +I +S+  ++FINQ+RMKIG M +G+PETTTGGNALKFYSS+R+DIR++ +
Sbjct: 179 SHALRKLTGTIHKSRTAVIFINQIRMKIGTMGYGNPETTTGGNALKFYSSIRMDIRKIQT 238

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           +KDK+ + G++TRVKVVKNK+A PF++  FDI+YG GIS  GELIDLG    I++KSG+W
Sbjct: 239 LKDKEEVYGSRTRVKVVKNKVAPPFREALFDILYGTGISRTGELIDLGSDVGIIEKSGSW 298

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           F+F  +RLGQG+EN +  L EN  +  N+E+ L ++ G++   ++         D D+
Sbjct: 299 FAFGSERLGQGKENVRALLEENEALRLNVEAKLIEHLGMMPSKVVDPDDNAGAMDDDE 356


>gi|311350335|gb|ADP92366.1| recombinase [Burkholderia cenocepacia]
 gi|311350337|gb|ADP92367.1| recombinase [Burkholderia cenocepacia]
 gi|311350403|gb|ADP92400.1| recombinase [Burkholderia cenocepacia]
 gi|311350405|gb|ADP92401.1| recombinase [Burkholderia cenocepacia]
 gi|311350407|gb|ADP92402.1| recombinase [Burkholderia cenocepacia]
 gi|311350409|gb|ADP92403.1| recombinase [Burkholderia cenocepacia]
          Length = 295

 Score =  338 bits (867), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 214/296 (72%), Positives = 260/296 (87%), Gaps = 1/296 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIY
Sbjct: 1   KALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQA
Sbjct: 60  GPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+
Sbjct: 120 LEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRT 179

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVK
Sbjct: 180 NCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVK 239

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           VVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG
Sbjct: 240 VVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQG 295


>gi|311350395|gb|ADP92396.1| recombinase [Burkholderia lata]
 gi|311350397|gb|ADP92397.1| recombinase [Burkholderia lata]
          Length = 295

 Score =  338 bits (867), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 214/296 (72%), Positives = 260/296 (87%), Gaps = 1/296 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIY
Sbjct: 1   KALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQA
Sbjct: 60  GPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+
Sbjct: 120 LEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRT 179

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVK
Sbjct: 180 NCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVK 239

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           VVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG
Sbjct: 240 VVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQG 295


>gi|291556573|emb|CBL33690.1| protein RecA [Eubacterium siraeum V10Sc8a]
          Length = 419

 Score =  338 bits (867), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 190/352 (53%), Positives = 262/352 (74%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+ A+ QI + YG+GA+M LG +G+    +E V +GS+GLD ALGIGG PKGRI+
Sbjct: 21  EKKKALDTAMEQIIKNYGQGAVMFLGGEGNKKLDVESVPTGSIGLDYALGIGGLPKGRII 80

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPES GKTT+ LH IA++QK GG  AF+D EHALD +YA+ LGVD+ +L++SQPDTG
Sbjct: 81  EIYGPESGGKTTVTLHAIAETQKLGGMAAFIDVEHALDPVYAKSLGVDIDHLIVSQPDTG 140

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L RSGA+DI+V+DSVAA+  +AEI+G++G+S  G+QARLMS A+RKLTS I
Sbjct: 141 EQALEIMETLARSGAIDIVVLDSVAAMVTKAEIDGEIGDSFVGVQARLMSAAMRKLTSVI 200

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S  + +FINQ+R KIGVM+G+PETT GG ALKFY+SVR+++R+   I D   I G  T
Sbjct: 201 SKSNTVAIFINQVREKIGVMYGNPETTPGGRALKFYASVRIEVRKGEKIVDDGEIIGYTT 260

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           + KVVKNK+A PFK+ +FD+++GEGIS  GE+I +G +   + KSGAW+S+ G+RLGQG+
Sbjct: 261 KCKVVKNKVAPPFKETQFDMIFGEGISRLGEIITMGEELGFIKKSGAWYSYNGERLGQGK 320

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           E +K FL+EN ++   IE  +++N   +  S  ++       D  +   +N 
Sbjct: 321 EKTKKFLKENDDLRLEIEGKIKENMSKLDMSASEDGEGTDNADTSESAAENE 372


>gi|296803118|gb|ADH51635.1| DNA recombinase [Burkholderia seminalis]
          Length = 296

 Score =  338 bits (866), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 210/296 (70%), Positives = 260/296 (87%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DA
Sbjct: 1   DIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEI
Sbjct: 61  EHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 121 EGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+I
Sbjct: 181 KFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEII 240

Query: 284 DLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           DLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ +R++ G+ +
Sbjct: 241 DLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIRESLGVAS 296


>gi|116511213|ref|YP_808429.1| recombinase A [Lactococcus lactis subsp. cremoris SK11]
 gi|125623243|ref|YP_001031726.1| recombinase A [Lactococcus lactis subsp. cremoris MG1363]
 gi|123025606|sp|Q031W5|RECA_LACLS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|146325680|sp|A2RI85|RECA_LACLM RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|116106867|gb|ABJ72007.1| RecA protein [Lactococcus lactis subsp. cremoris SK11]
 gi|124492051|emb|CAL96979.1| recombination protein A [Lactococcus lactis subsp. cremoris MG1363]
 gi|300069993|gb|ADJ59393.1| recombinase A [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 387

 Score =  338 bits (866), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 189/356 (53%), Positives = 260/356 (73%), Gaps = 14/356 (3%)

Query: 1   MDYRKEMNIVD--------KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGS 52
           M  +K+ N  D        + KAL  AL+ I++ +GKG++M+LG   +  + + VVSSGS
Sbjct: 1   MATKKKTNFDDITKKYGAERDKALADALALIEKDFGKGSLMRLGEAAN--QKVSVVSSGS 58

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           L LDIALG GG+PKGRIVEIYGPESSGKTT+ALH +A  QK GG  AF+DAE+ALD  YA
Sbjct: 59  LALDIALGAGGYPKGRIVEIYGPESSGKTTVALHAVAAVQKEGGIAAFIDAENALDPEYA 118

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           + LGV++  LL+SQPD GEQ L+I + L+ SGAVD++VIDSVAAL P+AEI+G++G+S  
Sbjct: 119 KALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAALVPKAEIDGEIGDSSV 178

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QAR+MSQA+RKL   I+++K   +FINQ+R K+GVMFGSPETT GG ALKFY+SVRLD
Sbjct: 179 GLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLD 238

Query: 233 IRRVGSIKDK----DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           +R    I++      +  G  T++KVVKNK+A PFK    DIM+GEGIS  GEL+++ V+
Sbjct: 239 VRGSTKIEEGSGDNKTQIGKITKIKVVKNKVAPPFKVALVDIMFGEGISSTGELLNIAVE 298

Query: 289 ASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
             I+ KSGAWF++  +++GQG E +K +L+E+ ++ + I+  +R   GL+ DS + 
Sbjct: 299 EGIIKKSGAWFAYNDEKIGQGAEKAKNYLKEHQDVFDEIDHKVRAAHGLLDDSEVA 354


>gi|167750129|ref|ZP_02422256.1| hypothetical protein EUBSIR_01098 [Eubacterium siraeum DSM 15702]
 gi|167656872|gb|EDS01002.1| hypothetical protein EUBSIR_01098 [Eubacterium siraeum DSM 15702]
          Length = 419

 Score =  338 bits (866), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 190/352 (53%), Positives = 262/352 (74%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL+ A+ QI + YG+GA+M LG +G+    +E V +GS+GLD ALGIGG PKGRI+
Sbjct: 21  EKKKALDTAMEQIIKNYGQGAVMFLGGEGNKKLDVESVPTGSIGLDYALGIGGLPKGRII 80

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPES GKTT+ LH IA++QK GG  AF+D EHALD +YA+ LGVD+ +L++SQPDTG
Sbjct: 81  EIYGPESGGKTTVTLHAIAETQKLGGMAAFIDVEHALDPVYAKSLGVDIDHLIVSQPDTG 140

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + L RSGA+DI+V+DSVAA+  +AEI+G++G+S  G+QARLMS A+RKLTS I
Sbjct: 141 EQALEIMETLARSGAIDIVVLDSVAAMVTKAEIDGEIGDSFVGVQARLMSAAMRKLTSVI 200

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S  + +FINQ+R KIGVM+G+PETT GG ALKFY+SVR+++R+   I D   I G  T
Sbjct: 201 SKSNTVAIFINQVREKIGVMYGNPETTPGGRALKFYASVRIEVRKGEKIVDDGEIIGYTT 260

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           + KVVKNK+A PFK+ +FD+++GEGIS  GE+I +G +   + KSGAW+S+ G+RLGQG+
Sbjct: 261 KCKVVKNKVAPPFKETQFDMIFGEGISRLGEIITMGEELGFIKKSGAWYSYNGERLGQGK 320

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           E +K FL+EN ++   IE  +++N   +  S  ++       D  +   +N 
Sbjct: 321 EKTKKFLKENDDLRLEIEGKIKENMSKLDMSASEDGEGTDNADTSESAAENE 372


>gi|296803076|gb|ADH51614.1| DNA recombinase [Burkholderia contaminans]
          Length = 297

 Score =  338 bits (866), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 214/298 (71%), Positives = 260/298 (87%), Gaps = 1/298 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+
Sbjct: 60  AELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG
Sbjct: 120 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  F
Sbjct: 180 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 239

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
           DI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  
Sbjct: 240 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 297


>gi|166079836|gb|ABY81640.1| recombinase A [Staphylococcus xylosus]
          Length = 319

 Score =  338 bits (866), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 191/321 (59%), Positives = 245/321 (76%), Gaps = 2/321 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKGA+M+LG   +           S+ LD ALG+GG+PKGRI+EIYGPESSGKTT+
Sbjct: 1   EKSFGKGAVMKLGDNEARKVSSVSSG--SVTLDNALGVGGYPKGRIIEIYGPESSGKTTV 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALH IA+ Q+ GG  AF+DAEHALD +YA  LGVD++NL +SQPD GEQ LEI +  VRS
Sbjct: 59  ALHAIAEVQRNGGVVAFIDAEHALDPVYAEALGVDIQNLYLSQPDHGEQGLEIAEAFVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +IS+S    VFINQ+
Sbjct: 119 GAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAISKSNTTAVFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           R K+GVMFG+PE T GG ALKFYSSVRL++RR   +K    I GN+T++KVVKNK+A PF
Sbjct: 179 REKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRTKIKVVKNKVAPPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           +  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G R+GQG+EN K +L+EN  +
Sbjct: 239 RVAEVDIMYGKGISKEGELIDLGVENEIVDKSGAWYSYNGDRMGQGKENVKSYLKENPAV 298

Query: 324 AENIESLLRQNAGLVADSLLQ 344
              I+  LR+  G+    + +
Sbjct: 299 KAEIDRKLREKLGIFDGDVEE 319


>gi|325145697|gb|ADY86118.1| RecA [Burkholderia sp. A-10.3]
          Length = 338

 Score =  338 bits (866), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 201/327 (61%), Positives = 247/327 (75%), Gaps = 1/327 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEI
Sbjct: 1   SKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSG++  IVIDSVAAL P+AEIE                            
Sbjct: 120 ALEITDALVRSGSIXXIVIDSVAALVPKAEIEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 179

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
                   N +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRV
Sbjct: 180 XXXXXXXXNXIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK++ PF++  FDI+YGEGIS  GE+ DLGV+A IVDK+GAW+S+ G+++GQG++N
Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIXDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299

Query: 313 SKIFLRENIEIAENIESLLRQNAGLVA 339
           ++ FLREN EIA  IE+ +R++ G+ A
Sbjct: 300 AREFLRENPEIAREIENRIRESLGVAA 326


>gi|330719360|ref|ZP_08313960.1| recombinase A [Leuconostoc fallax KCTC 3537]
          Length = 379

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 198/328 (60%), Positives = 258/328 (78%), Gaps = 4/328 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL +I++ +GKG+IM+LG        +E + SGS+ LDIALG+GG+PKGRI+E
Sbjct: 17  REAALQEALKKIEKNFGKGSIMKLGDNN--LTRVETIPSGSVKLDIALGVGGYPKGRIIE 74

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  YA  LGVD K LL+SQPDTGE
Sbjct: 75  VYGPESSGKTTIALHAVAEVQKQGGTAAYIDAENALDVKYAEALGVDSKELLLSQPDTGE 134

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q LEI D LV+SGAVD+IV+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL  +++
Sbjct: 135 QGLEIADALVQSGAVDMIVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLAGTLN 194

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           R+  I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR   IKD   +TGN T+
Sbjct: 195 RTGTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRSTQIKDGSEVTGNLTK 254

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF+  E DIMYG+GIS  GELIDL V+  IVDKSGAW++++G+R+GQGRE
Sbjct: 255 VKVVKNKVAPPFRVAEVDIMYGKGISQTGELIDLAVEKDIVDKSGAWYAYEGERIGQGRE 314

Query: 312 NSKIFLRE--NIEIAENIESLLRQNAGL 337
             K FL    + ++ + I + +R+  G+
Sbjct: 315 KVKEFLDSEGHEQMRKEIYARVREAYGI 342


>gi|313681177|ref|YP_004058915.1| reca protein [Sulfuricurvum kujiense DSM 16994]
 gi|313154037|gb|ADR32715.1| RecA protein [Sulfuricurvum kujiense DSM 16994]
          Length = 346

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 201/348 (57%), Positives = 265/348 (76%), Gaps = 3/348 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M    K K+LE A+ QI + +GKG +M+LG +    E I  +S+GS+GLD+ALGIGG P+
Sbjct: 1   MMDPQKLKSLELAMKQIDKTFGKGTLMRLGDKE--IEPINSISTGSIGLDLALGIGGVPE 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++EIYGPESSGKTTL+L   A+ QK GG CAF+DAEHALD  YA+ LGVD++NLL+SQ
Sbjct: 59  GRVIEIYGPESSGKTTLSLQITAECQKNGGVCAFIDAEHALDIGYAKNLGVDVENLLVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQAL+I + +VRSGAVD+IVIDSVAALTP+ EIEG+M +   G+QARLMS+ALRKL
Sbjct: 119 PDYGEQALDIVETIVRSGAVDLIVIDSVAALTPKVEIEGEMNDQQVGVQARLMSKALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           T  + +  C ++FINQ+RMKIG M +GSPETTTGGNALKFY+SVR+D+R++ ++K  +S 
Sbjct: 179 TGIMHKMNCTIIFINQIRMKIGTMGYGSPETTTGGNALKFYASVRIDVRKIATLKQGESQ 238

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+ + KV+KNK+A PF+Q EFDIM+GEGIS  GEL+D GVK  I+DKSGAWFSF+  +
Sbjct: 239 IGNRVKAKVIKNKVAPPFRQAEFDIMFGEGISKEGELVDYGVKLDIIDKSGAWFSFEDVK 298

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           LGQGREN K   ++  E+A  +E  ++   G+     + E  I+  D+
Sbjct: 299 LGQGRENVKQKFKDEPELARKVEEKIKSAMGVSGIIAMDESDISEVDE 346


>gi|320159562|ref|YP_004172786.1| protein RecA [Anaerolinea thermophila UNI-1]
 gi|319993415|dbj|BAJ62186.1| protein RecA [Anaerolinea thermophila UNI-1]
          Length = 362

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 203/345 (58%), Positives = 259/345 (75%), Gaps = 5/345 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +   L+ AL  I + YG+GAIM++G    +   +E + +GSL LDIALG+GG P+GRI E
Sbjct: 22  RRAVLDKALGDITKRYGEGAIMRMGEAQHM--AVEAIPTGSLSLDIALGVGGVPRGRITE 79

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+  H +A++Q+ GG  A++D EHALD  YA + GVD++NLLISQPDTGE
Sbjct: 80  IYGPESSGKTTICQHIVAEAQRMGGVAAYIDMEHALDPAYAARCGVDVENLLISQPDTGE 139

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI + LVRSGAVD++VIDSVAAL PRAEIEGDMG++  GMQARLMSQALRKL+ +I+
Sbjct: 140 QALEIAETLVRSGAVDVVVIDSVAALVPRAEIEGDMGDASMGMQARLMSQALRKLSGAIN 199

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++K  ++F NQ+R KIGVMFG+PETTTGG ALKFY+SVRLDIRR+ SIK    I GN+ R
Sbjct: 200 QTKTTVIFTNQLRQKIGVMFGNPETTTGGMALKFYASVRLDIRRIQSIKLGAEIIGNRVR 259

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           V+VVKNK+A PF+  EFDIMY EGIS  G+++DL     IV K GA+FS+   RLGQGRE
Sbjct: 260 VRVVKNKVAPPFRTAEFDIMYNEGISKVGDVLDLATSLDIVTKRGAFFSYGDVRLGQGRE 319

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           N+K FLR+N ++ + IE  +RQ A       L  P     +DA++
Sbjct: 320 NAKEFLRQNPDLLQEIELAVRQRA---MSGELPLPLAGGDEDAEE 361


>gi|94987624|ref|YP_595557.1| recombinase A [Lawsonia intracellularis PHE/MN1-00]
 gi|94731873|emb|CAJ55236.1| RecA protein (Recombinase A) [Lawsonia intracellularis PHE/MN1-00]
          Length = 355

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 203/356 (57%), Positives = 268/356 (75%), Gaps = 3/356 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M  +       + +AL+ AL  I+R +G+GA+M+L     +   + V+ +GS+GLD+ALG
Sbjct: 1   MAKKSISPEDSRREALKTALDTIERKFGQGAVMKLSDD--VHVKVAVIPTGSIGLDLALG 58

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG P+GR+ EIYGPESSGKTTL LH IA+ QK GGT AF+DAEHALD  YA++LGV   
Sbjct: 59  IGGIPRGRVTEIYGPESSGKTTLTLHIIAECQKLGGTAAFIDAEHALDIAYAKRLGVKTD 118

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            L+ISQPD GEQALEI DMLVRSGAVD++V+DSVAAL P+ E+EG MGE+  G  ARLMS
Sbjct: 119 ELIISQPDHGEQALEIADMLVRSGAVDLVVVDSVAALIPQTELEGSMGETQVGGHARLMS 178

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSI 239
            ALRKLT +I +S   ++FINQ+RMKIGV+ +GSPETTTGGNALKFYSSVR+DIR++ ++
Sbjct: 179 HALRKLTGTIHKSHTAVIFINQIRMKIGVVGYGSPETTTGGNALKFYSSVRMDIRKIQTL 238

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           KDK+   G+ TRVKVVKNKMA PF++ +FDI++G GIS  GELIDLGV+A I+DKSG+WF
Sbjct: 239 KDKEESYGSLTRVKVVKNKMAPPFREAKFDIIWGTGISRSGELIDLGVEAGIIDKSGSWF 298

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           +F  ++LGQG+E  +  L EN  +  +IE+ L ++ G+  + LL   +   +D+ D
Sbjct: 299 AFGSEKLGQGKEKVRALLDENTSLKSSIETALMEHLGMNPEKLLCPVSDELEDNYD 354


>gi|311350343|gb|ADP92370.1| recombinase [Burkholderia pseudomallei]
 gi|311350345|gb|ADP92371.1| recombinase [Burkholderia pseudomallei]
 gi|311350347|gb|ADP92372.1| recombinase [Burkholderia pseudomallei]
 gi|311350355|gb|ADP92376.1| recombinase [Burkholderia pseudomallei]
          Length = 295

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 213/296 (71%), Positives = 259/296 (87%), Gaps = 1/296 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL AAL+QI++ +GKG+IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIY
Sbjct: 1   KALAAALAQIEKQFGKGSIMRLGD-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQA
Sbjct: 60  GPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT +I R+
Sbjct: 120 LEIVDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTGTIKRT 179

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVK
Sbjct: 180 NCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVK 239

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           VVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG
Sbjct: 240 VVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYSGEKIGQG 295


>gi|166079851|gb|ABY81647.1| recombinase A [Staphylococcus caprae]
          Length = 320

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 193/321 (60%), Positives = 248/321 (77%), Gaps = 2/321 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKGA+M+LG               S+ +D ALG+GG+PKGRI+EIYGPESSGKTT+
Sbjct: 1   EKSFGKGAVMKLGDNKGRRVSSTSSG--SVTVDNALGVGGYPKGRIIEIYGPESSGKTTV 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALH IA+ QK GG  AF+DAEHALD +YA+ LGVD+ NL +SQPD GEQ LEI +  VRS
Sbjct: 59  ALHAIAEVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +IS+S    +FINQ+
Sbjct: 119 GAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAISKSNTTAIFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T++KVVKNK+A PF
Sbjct: 179 REKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRTKIKVVKNKVAPPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           +  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G+R+GQG+EN K +L+EN +I
Sbjct: 239 RVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGKENVKNYLKENPQI 298

Query: 324 AENIESLLRQNAGLVADSLLQ 344
            E I+  LR+  G+    + +
Sbjct: 299 KEEIDRKLREKLGIFDGDVDE 319


>gi|212550399|ref|YP_002308716.1| recombinase A [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212548637|dbj|BAG83305.1| recombinase A [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 357

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 205/327 (62%), Positives = 261/327 (79%), Gaps = 2/327 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
              D+ +AL  A  +I++ +GKG+IM++G      E I V+ +GS+ L+IALG+GG+P+G
Sbjct: 16  PNADRLEALRIATDKIEKNFGKGSIMKMGDNA--IEEISVIPTGSISLNIALGVGGYPRG 73

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EIYGPESSGKTTLA+H IA++QKTGG  AF+DAEHA D  YA KLGVD+ NL ISQP
Sbjct: 74  RIIEIYGPESSGKTTLAIHAIAEAQKTGGIAAFIDAEHAFDRFYAEKLGVDINNLWISQP 133

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D+GEQALEI + L+RS A+DIIVIDSVAALTP+AE+EG+MGES  G+QARLMSQALRKLT
Sbjct: 134 DSGEQALEIGEQLIRSSAIDIIVIDSVAALTPKAELEGEMGESKMGLQARLMSQALRKLT 193

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           S+IS++    +FINQ+R KIGV+FG+PETTTGGNALKFYSSVRLDIR+  +IKD D + G
Sbjct: 194 STISKTNTTCIFINQLRDKIGVIFGNPETTTGGNALKFYSSVRLDIRKASAIKDGDEVKG 253

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           NQT+VKVVKNK+A PF++ EFDIM+ EGIS  GELIDLG +  I+ KSG+W+S+   +LG
Sbjct: 254 NQTKVKVVKNKVAPPFRKAEFDIMFKEGISKTGELIDLGTEWEIIKKSGSWYSYNDVKLG 313

Query: 308 QGRENSKIFLRENIEIAENIESLLRQN 334
           QGRE SK +L+   E+ E IE  + + 
Sbjct: 314 QGREASKDYLKNKPELMEKIEIQIIEK 340


>gi|320535880|ref|ZP_08035954.1| protein RecA [Treponema phagedenis F0421]
 gi|320147270|gb|EFW38812.1| protein RecA [Treponema phagedenis F0421]
          Length = 413

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 194/336 (57%), Positives = 272/336 (80%), Gaps = 2/336 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M+     N  +K KALEAA  QI++ +G+G++M+LG + +   G++V+ SG++ LD ALG
Sbjct: 1   MEIPVNANPEEKLKALEAARLQIEKQFGQGSLMKLG-KDNAATGVDVIPSGNILLDEALG 59

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG+P+GRI+EIYGPESSGKTTLALH +A++QK GG  AF+D+EHALD  YA+ LGV++ 
Sbjct: 60  IGGYPRGRIIEIYGPESSGKTTLALHAVAEAQKRGGIAAFIDSEHALDPQYAQALGVNID 119

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            L +SQPDTGEQALEI + LVRSGAVDIIV+DSVAALTP+AEIEG+MG+S  G+QARLMS
Sbjct: 120 ELWVSQPDTGEQALEIAESLVRSGAVDIIVVDSVAALTPQAEIEGEMGDSHMGLQARLMS 179

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI- 239
           QALRKLT+ I++SKC+++FINQ+RMKIGVMFG+PETTTGGNALKFY+S+R+++R+  ++ 
Sbjct: 180 QALRKLTAIINKSKCMIIFINQLRMKIGVMFGNPETTTGGNALKFYASIRIEVRKTDTLG 239

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           K ++   GN  R++VVKNK+A PF+++E +I++G+G S FG ++D  VK  I+DK GAW+
Sbjct: 240 KGEEEAWGNMVRIRVVKNKLAPPFRKLETEILFGKGFSIFGSILDAAVKQEIIDKKGAWY 299

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
           S+  +++GQG+EN+  FL+EN+++   IE  +R+  
Sbjct: 300 SYGEEKIGQGKENATKFLQENLDLTMQIEKQIREKL 335


>gi|255534404|ref|YP_003094775.1| RecA protein [Flavobacteriaceae bacterium 3519-10]
 gi|255340600|gb|ACU06713.1| RecA protein [Flavobacteriaceae bacterium 3519-10]
          Length = 333

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 199/327 (60%), Positives = 264/327 (80%), Gaps = 2/327 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +  DK KAL   L ++ + YGKG +M LG   S+ + IEV+ SGSLGLD+ALG+GG+P+G
Sbjct: 3   SNDDKKKALALVLDKLDKTYGKGTVMTLGD-ASVDDSIEVIPSGSLGLDLALGVGGYPRG 61

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R++EIYGPESSGKTTL LH IA++QK GG  AF+DAEHA D  YA KLG++L +L+ISQP
Sbjct: 62  RVIEIYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAEHAFDRHYASKLGINLDDLIISQP 121

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI D L+RSGA+DI+VIDSVAALTP+AEIEG+MG+S  G+ ARLMSQALRKLT
Sbjct: 122 DNGEQALEIADNLIRSGAIDIVVIDSVAALTPKAEIEGEMGDSKMGLHARLMSQALRKLT 181

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS-IKDKDSIT 246
            +IS++KC ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVR+DIR+  + IK  D   
Sbjct: 182 GTISKTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRIDIRKASAPIKTGDEAV 241

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G++ +VK+VKNK+A PFK  EFDIMYGEG+S  GE++D+ V+  +V KSG+WFS++  +L
Sbjct: 242 GSRVKVKIVKNKVAPPFKMAEFDIMYGEGVSKVGEILDMAVETGVVKKSGSWFSYEETKL 301

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333
           GQGR+  +  L++N E++E +E+ +++
Sbjct: 302 GQGRDAVRDMLKDNPELSEELEAKIKE 328


>gi|255994241|ref|ZP_05427376.1| protein RecA [Eubacterium saphenum ATCC 49989]
 gi|255993909|gb|EEU03998.1| protein RecA [Eubacterium saphenum ATCC 49989]
          Length = 376

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 195/346 (56%), Positives = 265/346 (76%), Gaps = 5/346 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
            +  +K +AL  AL  I + +GKG+IM+LG  G++++ ++V+S+G++ LD+A GIGG P+
Sbjct: 15  KDDKEKERALNDALDLITKQFGKGSIMRLGE-GALYDEVDVISTGAISLDVATGIGGIPR 73

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVE+YGPESSGKTTL LH IA++QK GG  AF+DAEHALD  YARKLGVD++NL++SQ
Sbjct: 74  GRIVEVYGPESSGKTTLTLHVIAEAQKNGGRAAFIDAEHALDPEYARKLGVDVENLIVSQ 133

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P TGE AL I D LVRSGA+D++VIDSVAAL PR EIEG+MG +  G+QARLMSQALRKL
Sbjct: 134 PSTGEDALSICDYLVRSGAIDVVVIDSVAALVPRTEIEGEMGSAHVGLQARLMSQALRKL 193

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T +  +S   L+FINQ+R K+G ++ +PETTTGG ALKFYSS+RLD+RR  SIK  D I 
Sbjct: 194 TGATQKSNTALIFINQLREKVGNIY-NPETTTGGRALKFYSSMRLDVRRSESIKTGDGII 252

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+T+VK+ KNKMA PFKQVEFDI++GEGIS  G+++D  V A +V+KSGAW+S   +++
Sbjct: 253 GNKTKVKLAKNKMAPPFKQVEFDIIFGEGISKEGDVLDEAVTAGLVNKSGAWYSMNSEKI 312

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GQGR+ +K +L++N +I E + S +     +V +   ++ +    D
Sbjct: 313 GQGRDAAKKYLKDNPKIYEELRSEI---LDIVFNKDREDESTEDSD 355


>gi|260061218|ref|YP_003194298.1| recombinase A [Robiginitalea biformata HTCC2501]
 gi|88785350|gb|EAR16519.1| recombinase A [Robiginitalea biformata HTCC2501]
          Length = 335

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 208/335 (62%), Positives = 266/335 (79%), Gaps = 7/335 (2%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   K+     K KAL+  L ++ + YGKG +M++G    + + +EV+ SGSLGLD+ALG
Sbjct: 1   MSSEKDA----KLKALKLTLDKLDKTYGKGTVMKMGDD--VAQDVEVIPSGSLGLDVALG 54

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG+P+GR+VEIYGPESSGKTTL LH IA++QK GG  AF+DAEHA D  YA+ LGVD+ 
Sbjct: 55  VGGYPRGRVVEIYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAEHAFDRFYAKNLGVDID 114

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL+ISQPD GEQALEI D L+RSGA+DIIV+DSVAALTP++EIEG+MG+S  G+ ARLMS
Sbjct: 115 NLIISQPDHGEQALEIADNLIRSGAIDIIVVDSVAALTPKSEIEGEMGDSKVGLHARLMS 174

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLT+SIS++ C ++FINQ+R KIGVMFG+PETTTGGNALKFYSSVRLDIRR   IK
Sbjct: 175 QALRKLTASISKTHCTVIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRSTQIK 234

Query: 241 D-KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           +    + GN+TRVKVVKNK+A PF+ VEFDIMYGEGIS  GE++D+GV   I+ KSG+WF
Sbjct: 235 NTDGDVQGNKTRVKVVKNKVAPPFRTVEFDIMYGEGISKVGEILDIGVDYEIIQKSGSWF 294

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
           S+   +LGQGR+  KI L++N E+ E +E  +++ 
Sbjct: 295 SYGDTKLGQGRDAVKILLKDNPELLEELEEKIKEA 329


>gi|254421418|ref|ZP_05035136.1| protein RecA [Synechococcus sp. PCC 7335]
 gi|196188907|gb|EDX83871.1| protein RecA [Synechococcus sp. PCC 7335]
          Length = 378

 Score =  337 bits (864), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 194/354 (54%), Positives = 267/354 (75%), Gaps = 5/354 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL + L+QI+R +GKG+IM+LG    +   +E + +G+L LD+ALG GG PKGR+
Sbjct: 7   SEKQKALTSVLTQIERNFGKGSIMRLGEASRM--QVETIPTGALTLDMALG-GGLPKGRV 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALH IA+ Q+ GG  AFVDAEHALD  YA  LGVD++NLLISQPDT
Sbjct: 64  IEIYGPESSGKTTLALHAIAEIQRQGGVAAFVDAEHALDPYYAANLGVDVENLLISQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GE  LEI D LVRS AVD+IV+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 124 GEMGLEICDQLVRSSAVDLIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGN 183

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           I +S+C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K  +   G +
Sbjct: 184 IGKSQCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKKGNDQFGIR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKV KNK+A PF+  EFDI++GEGIS  G L+D+  +  IV + GAW+S++G  + QG
Sbjct: 244 VKVKVAKNKVAPPFRIAEFDIIFGEGISILGCLLDIAEEHDIVVRKGAWYSYEGNNVAQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           R+N+ I ++E+ E A  +++ + +   +  +++  EP + +     ++   + E
Sbjct: 304 RDNTIIRMKEDPEFAAKVKAQVMEK--IKPEAIPIEPEVESVVTPPEEVDVSAE 355


>gi|298207281|ref|YP_003715460.1| RecA [Croceibacter atlanticus HTCC2559]
 gi|83849917|gb|EAP87785.1| RecA [Croceibacter atlanticus HTCC2559]
          Length = 337

 Score =  337 bits (864), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 205/323 (63%), Positives = 258/323 (79%), Gaps = 3/323 (0%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
            L ++ + YGKG +M++  Q      +E +S+GSLGLD+ALG+GG+P+GRIVEIYGPESS
Sbjct: 17  TLDKMDKTYGKGTVMKMSDQS--VSDVEAISTGSLGLDLALGVGGYPRGRIVEIYGPESS 74

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTL LH IA++QK GG  AF+DAEHA D  YA KLGVDL+NL+ISQPD GEQALEITD
Sbjct: 75  GKTTLTLHAIAEAQKAGGIAAFIDAEHAFDRFYAEKLGVDLENLIISQPDNGEQALEITD 134

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            L+RSGA+DIIVIDSVAALTP++EIEG+MG+S  G+ ARLMSQALRKLT SIS++KC ++
Sbjct: 135 NLIRSGAIDIIVIDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTGSISKTKCTVI 194

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQTRVKVVKN 257
           FINQ+R KIGVMFG+PETTTGGNALKFY SVRLDIRR   IKD +  + GN+TRVKVVKN
Sbjct: 195 FINQLREKIGVMFGNPETTTGGNALKFYCSVRLDIRRSTQIKDSNSEVQGNKTRVKVVKN 254

Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317
           K+A PF+  EFDIMYG+GIS  GE+ID+GV   IV K+G+WFS++  +LGQGR+  K  L
Sbjct: 255 KVAPPFRTAEFDIMYGQGISKVGEIIDIGVDYEIVKKAGSWFSYEDTKLGQGRDAVKALL 314

Query: 318 RENIEIAENIESLLRQNAGLVAD 340
            +N E+ E +E+ ++    +  +
Sbjct: 315 LDNPELMEELETKIKAAIKVAKE 337


>gi|303326375|ref|ZP_07356818.1| protein RecA [Desulfovibrio sp. 3_1_syn3]
 gi|302864291|gb|EFL87222.1| protein RecA [Desulfovibrio sp. 3_1_syn3]
          Length = 365

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 207/365 (56%), Positives = 272/365 (74%), Gaps = 4/365 (1%)

Query: 1   MDYRKEMNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIAL 59
           M  +  ++  D +++AL  ALS I+R YGKGA+M+L     +   I V+ +GS+GLD+AL
Sbjct: 1   MAKKPALSPEDARAEALSTALSTIERKYGKGAVMKLSDDVQV--DIPVIPTGSIGLDLAL 58

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           G+GG P+GR+ EI+GPESSGKTTL LH IA+ QK GGTCAFVDAEHALD  YAR+LGV+ 
Sbjct: 59  GVGGIPRGRVTEIFGPESSGKTTLTLHIIAECQKLGGTCAFVDAEHALDVAYARRLGVNT 118

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
             LLISQPD GEQAL+I DMLVRSGAVD++VIDSVAAL P+AE+EGDMGE+  G  ARLM
Sbjct: 119 DELLISQPDYGEQALDIADMLVRSGAVDMVVIDSVAALIPQAELEGDMGETQVGGHARLM 178

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGS 238
           S A+R+LT +I +S+  ++FINQ+RMKIGV  +GSPETTTGGNALKFYSSVR+DIRR+ +
Sbjct: 179 SHAMRRLTGTIHKSRTSVIFINQIRMKIGVQGYGSPETTTGGNALKFYSSVRMDIRRIQT 238

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           +KDKD   G++T+VKVVKNK+A PF+   FDI+YG+GIS  GEL+DLG++A IV++SG+W
Sbjct: 239 LKDKDEAFGSRTKVKVVKNKVAPPFRIATFDILYGQGISRSGELLDLGIEAKIVEQSGSW 298

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           F+F  ++LGQGRE  +  L EN+++   IE+ + +  G+             +  A  D 
Sbjct: 299 FAFGSEKLGQGREKVRALLDENLDLRNQIEAKVIEFLGMHPKEFTPNAEDLDEGAAPLDS 358

Query: 359 TDNVE 363
               E
Sbjct: 359 PATPE 363


>gi|329943334|ref|ZP_08292108.1| protein RecA [Chlamydophila psittaci Cal10]
 gi|313848483|emb|CBY17487.1| recombinase A [Chlamydophila psittaci RD1]
 gi|325506502|gb|ADZ18140.1| recombinase A [Chlamydophila psittaci 6BC]
 gi|328814881|gb|EGF84871.1| protein RecA [Chlamydophila psittaci Cal10]
 gi|328915175|gb|AEB56008.1| recA protein [Chlamydophila psittaci 6BC]
          Length = 349

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 187/348 (53%), Positives = 263/348 (75%), Gaps = 5/348 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN+ D+ KALEAA++ I++ +G G+IM LG   +  E I  + +G+L LD+ALGIGG PK
Sbjct: 1   MNVPDRKKALEAAIAYIEKQFGSGSIMSLGKHSASHE-ISTIKTGALSLDLALGIGGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEI+GPESSGKTTLA H +A +QK GG  A++DAEHALD  YA  +G ++ +L+ISQ
Sbjct: 60  GRIVEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPSYASLIGANINDLMISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GE AL I ++L RSGAVD+IVIDSVAAL P++E+EGD+G+   G+QAR+MSQALRKL
Sbjct: 120 PDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGDIGDVHVGLQARMMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI- 245
           T++++RS+   +FINQ+R KIGV FG+PETTTGG ALKFYSS+R+DIRR+G+IK  +S  
Sbjct: 180 TATLARSQTCAIFINQIREKIGVSFGNPETTTGGRALKFYSSIRMDIRRIGAIKGNESFD 239

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+ +VKV KNK+A PF+  EFDI++ EGIS  G ++DL V+ +IV+K G+WF+++ ++
Sbjct: 240 LGNRIKVKVAKNKLAPPFRTAEFDILFNEGISSAGCILDLAVEYNIVEKKGSWFNYQDRK 299

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQ---NAGLVADSLLQEPAINT 350
           LGQGRE  +  L++N ++ E +E  + +   ++    +   +EP +  
Sbjct: 300 LGQGREAVREELKKNKKLLEELEKRIFEVTASSKTTVEEKKEEPVVQP 347


>gi|282900004|ref|ZP_06307964.1| RecA DNA recombination protein [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195102|gb|EFA70039.1| RecA DNA recombination protein [Cylindrospermopsis raciborskii
           CS-505]
          Length = 357

 Score =  337 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 193/324 (59%), Positives = 248/324 (76%), Gaps = 3/324 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL   L+QI+R +GKGAIM+LG    +   +E +S+G+L LD+ALG GG PKGR++E
Sbjct: 10  KQKALSMVLNQIERSFGKGAIMRLGDATRMR--VETISTGALTLDLALG-GGLPKGRVIE 66

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH IA+ Q+ GG  AFVDAEHALD  YA  LGVD++NLL+SQPDTGE
Sbjct: 67  IYGPESSGKTTVALHAIAEVQRNGGIAAFVDAEHALDPTYAGALGVDIENLLVSQPDTGE 126

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
             LEI D LVRS AVDI+VIDSVAAL PRAEIEGDMG++  G+QARLMSQALRK+T +I 
Sbjct: 127 AGLEIVDQLVRSAAVDIVVIDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKITGNIG 186

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S C ++FINQ+R KIGV +GSPETTTGGNALKFY+SVRLDIRR+ ++K      GN+ +
Sbjct: 187 KSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGSDEFGNRVK 246

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV KNK+A PF+  EFDI++G+G+S  G L+DL  +  ++ + GAW+S  G+ + QGR+
Sbjct: 247 VKVAKNKVAPPFRVAEFDIIFGKGVSTLGCLVDLAEETGVLIRKGAWYSHNGENISQGRD 306

Query: 312 NSKIFLRENIEIAENIESLLRQNA 335
           N+  +L E  + AE I+  +R   
Sbjct: 307 NAIKYLEEKSDFAEKIKEQVRAKL 330


>gi|109946946|ref|YP_664174.1| recombinase A [Helicobacter acinonychis str. Sheeba]
 gi|123173557|sp|Q17YV1|RECA_HELAH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|109714167|emb|CAJ99175.1| recA protein [Helicobacter acinonychis str. Sheeba]
          Length = 347

 Score =  337 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 202/343 (58%), Positives = 269/343 (78%), Gaps = 4/343 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA+  A+ QI +V+GKGA+++LG +    E I+ +S+GSLGLD+ALGIGG PKGRI+
Sbjct: 6   DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDSISTGSLGLDLALGIGGVPKGRII 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTG
Sbjct: 64  EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  +
Sbjct: 124 EQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183

Query: 191 SRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            +    L+FINQ+RMKI  + +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+
Sbjct: 184 HKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNR 243

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PF++ EFDIM+GEGIS  GE+ID GVK  IVDKSGAW S++ ++LGQG
Sbjct: 244 AKVKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           REN+K  L+E+  +A  I   ++++ G   + ++  P    ++
Sbjct: 304 RENAKALLKEDKALANEIILKIKESIG-SNEEIMPLPDEPLEE 345


>gi|296837441|gb|ADH59579.1| DNA recombinase [Burkholderia cepacia]
          Length = 298

 Score =  337 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 213/299 (71%), Positives = 260/299 (86%), Gaps = 1/299 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ 
Sbjct: 1   IMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEL 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVI
Sbjct: 60  QKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVI 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMF
Sbjct: 120 DSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMF 179

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+
Sbjct: 180 GNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDIL 239

Query: 272 YGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
           YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ 
Sbjct: 240 YGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 298


>gi|33862118|ref|NP_893679.1| recombinase A [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|50403571|sp|Q7UZU3|RECA_PROMP RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|33634336|emb|CAE20021.1| RecA bacterial DNA recombination protein [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 370

 Score =  337 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 192/331 (58%), Positives = 262/331 (79%), Gaps = 3/331 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           KE +  +K+KAL   L QI+R +G+G+IM+LG    +   +E +S+G+L LD+ALG GG+
Sbjct: 12  KESSSEEKNKALNLVLGQIERNFGRGSIMRLGDASRM--KVETISTGALTLDLALG-GGY 68

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGR+VE+YGPESSGKTTL LH IA+ QK GG  AFVDAEHALD +YA  LGVD++NLL+
Sbjct: 69  PKGRVVEVYGPESSGKTTLTLHAIAEVQKNGGIAAFVDAEHALDPVYAASLGVDVENLLV 128

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGE ALEI D L+RS AVD++V+DSVAALTPRAEIEG+MG+ + G QARLMSQA+R
Sbjct: 129 SQPDTGEMALEIVDQLIRSTAVDLVVVDSVAALTPRAEIEGEMGDHVIGSQARLMSQAMR 188

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           K+T +I +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K    
Sbjct: 189 KITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTE 248

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
             G + +VKV KNK+A PF+  EFDI++G+GIS  G L+DL  + +I+ + GAW+S++G+
Sbjct: 249 EYGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYSYEGE 308

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNA 335
            +GQGR+N+ I+L +N+EI   +ES+++   
Sbjct: 309 NIGQGRDNTIIWLDQNLEIKNKVESIVKTKL 339


>gi|291276423|ref|YP_003516195.1| recombination protein RecA [Helicobacter mustelae 12198]
 gi|290963617|emb|CBG39449.1| recA protein [Helicobacter mustelae 12198]
          Length = 346

 Score =  337 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 205/347 (59%), Positives = 264/347 (76%), Gaps = 4/347 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M    K KA+E AL QI + +GKGA+++LG +    E IE +S+GSLGLD+ALGI G PK
Sbjct: 1   MVDEQKKKAIELALKQIDKTFGKGALVRLGDKQ--VEKIEAISTGSLGLDLALGINGIPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTTL+L  +A+ Q+ GG CAF+DAEHALD  YA++LGVD +NLL+SQ
Sbjct: 59  GRIIEIYGPESSGKTTLSLQIVAECQRNGGICAFIDAEHALDVYYAKRLGVDTENLLVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI + L RSGAVD++VIDSVAALTP+AEI+GDMG+   G+QARLMS ALRK+
Sbjct: 119 PDNGEQALEILETLTRSGAVDLVVIDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           T  + +    L+FINQ+RMKIG M +GSPETTTGGNALKFY+SVR+DIRR+ ++K  D  
Sbjct: 179 TGVLHKMNTTLIFINQIRMKIGTMGYGSPETTTGGNALKFYASVRIDIRRIATLKQADQQ 238

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+ + KVVKNK+A PF++ EFDIM+GEGIS  GE+ID G+K  I+DKSGAW S+  ++
Sbjct: 239 IGNRVKAKVVKNKVAPPFREAEFDIMFGEGISIEGEIIDYGIKLDIIDKSGAWLSYGDKK 298

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           LGQGREN+K+ L+E+  +A  I   +R+      D +L  P     +
Sbjct: 299 LGQGRENAKLLLKEDKTLAAEITQKIREQIN-ATDEILPLPDEPENE 344


>gi|62185564|ref|YP_220349.1| recombinase A [Chlamydophila abortus S26/3]
 gi|76363323|sp|Q5L4P3|RECA_CHLAB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|62148631|emb|CAH64403.1| recombinase A [Chlamydophila abortus S26/3]
          Length = 349

 Score =  336 bits (862), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 186/328 (56%), Positives = 256/328 (78%), Gaps = 2/328 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN+ D+ KALEAA++ I++ +G G+IM LG   +  E I  + +G+L LD+ALGIGG PK
Sbjct: 1   MNVPDRKKALEAAIAYIEKQFGSGSIMSLGKHSASHE-ISTIKTGALSLDLALGIGGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEI+GPESSGKTTLA H +A +QK GG  A++DAEHALD  YA  +G ++ +L+ISQ
Sbjct: 60  GRIVEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPSYASLIGANIHDLMISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GE AL I ++L RSGAVD+IVIDSVAAL P++E+EGD+G+   G+QAR+MSQALRKL
Sbjct: 120 PDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGDIGDVHVGLQARMMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI- 245
           T++++RS+   +FINQ+R KIGV FG+PETTTGG ALKFYSS+R+DIRR+G+IK  +S  
Sbjct: 180 TATLARSQTCAIFINQIREKIGVSFGNPETTTGGRALKFYSSIRIDIRRIGAIKGNESFD 239

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+ +VKV KNK+A PFK  EFDI++ EGIS  G ++DL V+ +IV+K G+WF+++ ++
Sbjct: 240 LGNRIKVKVAKNKLAPPFKTAEFDILFNEGISSAGCILDLAVEHNIVEKKGSWFNYQDRK 299

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQ 333
           LGQGRE  +  L++N ++ E +E  + +
Sbjct: 300 LGQGREAVREELKKNKKLLEELEKRILE 327


>gi|238020355|ref|ZP_04600781.1| hypothetical protein GCWU000324_00235 [Kingella oralis ATCC 51147]
 gi|237867335|gb|EEP68341.1| hypothetical protein GCWU000324_00235 [Kingella oralis ATCC 51147]
          Length = 370

 Score =  336 bits (862), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 210/341 (61%), Positives = 269/341 (78%), Gaps = 6/341 (1%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKGAIM++    +  E ++V+S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKT
Sbjct: 33  QIEKSFGKGAIMKM-DGSTPQEELQVISTGSLGLDLALGVGGLPRGRIVEIFGPESSGKT 91

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L TIAQ QK GG CAF+DAE+A D +YARKLGV +++L++SQPDTGEQALEI DMLV
Sbjct: 92  TLCLETIAQCQKIGGVCAFIDAENAFDPVYARKLGVKVEDLMVSQPDTGEQALEICDMLV 151

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG VD++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  I ++  ++VFIN
Sbjct: 152 RSGGVDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGHIKKTNTLVVFIN 211

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKDSITGNQTRVKVVKNK 258
           Q+RMKIGVMFG+PETTTGGNALKFYSSVR+DIR    IK     ++  G +T+VKVVKNK
Sbjct: 212 QLRMKIGVMFGNPETTTGGNALKFYSSVRIDIRGTTQIKPTGKDETPIGKETKVKVVKNK 271

Query: 259 MASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLR 318
           +A PF+   FDI+YGEGIS+ GELIDLG K  I+ KSGAW+S+ G ++GQG+EN +I+L+
Sbjct: 272 VAPPFRSAAFDILYGEGISWEGELIDLGDKYGIIQKSGAWYSYDGNKIGQGKENVRIWLK 331

Query: 319 ENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           EN EIA  I   +R   GLV + ++ E  ++  D    D+ 
Sbjct: 332 ENPEIANQIAEKIRAE-GLV-NPIITEDVLDETDGEMPDEE 370


>gi|319936483|ref|ZP_08010899.1| recA [Coprobacillus sp. 29_1]
 gi|319808598|gb|EFW05150.1| recA [Coprobacillus sp. 29_1]
          Length = 345

 Score =  336 bits (862), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 182/332 (54%), Positives = 260/332 (78%), Gaps = 2/332 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
             + E     K KAL  A++QI++ +GKG++M+LG + ++   I+V+ +GSL LD ALGI
Sbjct: 7   AKKAEAVDGKKEKALADAITQIEKQFGKGSVMKLGDRVAV--DIDVIPTGSLTLDAALGI 64

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+PKGRI+EIYGPESSGKTTL LH IA+ QK GG  AF+DAEHA+D +YA+ LGV++  
Sbjct: 65  GGYPKGRIIEIYGPESSGKTTLTLHAIAEVQKQGGRAAFIDAEHAIDPVYAKNLGVNVDE 124

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L++SQPD+GEQ L I + LV+S A+D++V+DSVAAL P+ E++G+M ++  G+QARLMS+
Sbjct: 125 LILSQPDSGEQGLAIAETLVKSDAIDLVVVDSVAALVPQVELDGEMSDNSVGLQARLMSK 184

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+R+L+  ++++ C ++FINQ+R KIGVM+G+PETTTGG ALKFYSSVR++IR+  +IK+
Sbjct: 185 AMRRLSGLMNKTSCTIIFINQLREKIGVMYGNPETTTGGRALKFYSSVRIEIRKSEAIKN 244

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
              + GN+  VKVVKNK+A PF+   FDI+YG+GI+  GE+IDL V   I+DKSGAW+++
Sbjct: 245 GSEVVGNKVNVKVVKNKVAPPFRNTSFDIVYGKGIARDGEVIDLAVDNDIIDKSGAWYAY 304

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           +G+++GQGREN KIFL E+ EI   IE+ ++ 
Sbjct: 305 QGEKIGQGRENVKIFLAEHPEIMTEIENKVKD 336


>gi|298490120|ref|YP_003720297.1| recA protein ['Nostoc azollae' 0708]
 gi|298232038|gb|ADI63174.1| recA protein ['Nostoc azollae' 0708]
          Length = 359

 Score =  336 bits (862), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 194/324 (59%), Positives = 249/324 (76%), Gaps = 3/324 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL   L+QI+R +GKGAIM+LG    +   +E +S+G+L LD+ALG GG PKGR++E
Sbjct: 11  KQKALTMVLNQIERSFGKGAIMRLGDATRMR--VETISTGALTLDLALG-GGLPKGRVIE 67

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH IA+ QK GG  AFVDAEHALD  YA  LGVD++NLL+SQPDTGE
Sbjct: 68  IYGPESSGKTTVALHAIAEVQKNGGIAAFVDAEHALDPTYAGALGVDIENLLVSQPDTGE 127

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
             LEI D LVRS AVDI+VIDSVAAL PRAEIEGDMG++  G+QARLMSQALRK+T +I 
Sbjct: 128 AGLEIVDQLVRSAAVDIVVIDSVAALVPRAEIEGDMGDTHVGLQARLMSQALRKITGNIG 187

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S C ++FINQ+R KIGV +GSPETTTGGNALKFY+SVRLDIRR+ ++K      GN+ +
Sbjct: 188 KSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGSDEFGNRVK 247

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV KNK+A PF+  EFDI++G+G+S  G L+DL  +  ++ + GAW+S+ G+ + QGR+
Sbjct: 248 VKVAKNKVAPPFRIAEFDIIFGKGVSTLGCLVDLAEETGVLLRKGAWYSYNGENISQGRD 307

Query: 312 NSKIFLRENIEIAENIESLLRQNA 335
           N+  +L E  E A+ I  L+ +  
Sbjct: 308 NAIRYLEEKTEFADKIRELVCEKL 331


>gi|138894815|ref|YP_001125268.1| RecA2 protein [Geobacillus thermodenitrificans NG80-2]
 gi|134266328|gb|ABO66523.1| RecA2 protein [Geobacillus thermodenitrificans NG80-2]
          Length = 321

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 200/309 (64%), Positives = 249/309 (80%), Gaps = 2/309 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG Q      I  V SGSL LDIALG+GG+P+GRI+EIYGPESSGKTT+ALH IA+ Q
Sbjct: 1   MKLGEQAE--RQISTVPSGSLALDIALGVGGYPRGRIIEIYGPESSGKTTVALHAIAEVQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG  AF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI + LVRSGAVDIIVID
Sbjct: 59  KQGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEG+MG++  G+QARLMSQALRKL+ +I++SK I +FINQ+R K+GVMFG
Sbjct: 119 SVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETT GG ALKFY+SVRL++RR   IK  + + GN+T++KVVKNK+A PFK  + DIMY
Sbjct: 179 NPETTPGGRALKFYASVRLEVRRAEQIKQGNDMVGNKTKIKVVKNKVAPPFKTADVDIMY 238

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           GEGIS  GE+ID+  +  IV KSG+W+S+K +RLGQGREN+K FL+EN  IAE I   +R
Sbjct: 239 GEGISREGEIIDMAAELDIVQKSGSWYSYKDERLGQGRENAKQFLKENPHIAEEIARAIR 298

Query: 333 QNAGLVADS 341
           ++ G+ A  
Sbjct: 299 KHYGIDAGE 307


>gi|291060058|gb|ADD72793.1| protein RecA [Treponema pallidum subsp. pallidum str. Chicago]
          Length = 408

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 196/360 (54%), Positives = 277/360 (76%), Gaps = 6/360 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +  +K KALEAA  QI++ +G+G++M+LG +    +G+EV+ +G++ LD ALGIGG+P+G
Sbjct: 15  SFEEKMKALEAARLQIEKQFGQGSLMKLG-KDDAVQGVEVIPTGNILLDEALGIGGYPRG 73

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EI+GPESSGKTTLALH +A++QK GG  AF+DAEHALD  YA+ LGV + +L ISQP
Sbjct: 74  RIIEIFGPESSGKTTLALHAVAEAQKRGGIAAFIDAEHALDPQYAKDLGVSVGDLWISQP 133

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI + LVRSGAVDIIV+DSVAALTP+AEI+GDMG++  G+ ARLMSQALRKLT
Sbjct: 134 DTGEQALEIAESLVRSGAVDIIVVDSVAALTPQAEIQGDMGDAHVGLIARLMSQALRKLT 193

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SIT 246
           S I++SKC L+FINQ+RMKIG+MFG+PETTTGG ALKFYSSVR+++R+V ++   D    
Sbjct: 194 SIINKSKCTLIFINQLRMKIGIMFGNPETTTGGIALKFYSSVRIEVRKVETLSRGDEEAW 253

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ R+++VKNKMA PF++VE +I++G+G S F  L+D  VK  I++K GAW++++ +++
Sbjct: 254 GNKVRIRIVKNKMAPPFRKVETEILFGKGFSAFSCLLDAAVKQEIIEKKGAWYAYREEKI 313

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNA----GLVADSLLQEPAINTKDDADKDDTDNV 362
           GQGR+N+  FL++N++I   IE  +R         ++      PA++ +   ++ D   +
Sbjct: 314 GQGRDNAVGFLQQNMDITLEIERAVRTKLFPKQAFISSFQEHRPALSLEASPEESDAKTL 373


>gi|311350341|gb|ADP92369.1| recombinase [Burkholderia gladioli]
          Length = 295

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 213/296 (71%), Positives = 258/296 (87%), Gaps = 1/296 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL AAL+QI++ +GKG+IM+LG      E I+VVS+GSLGLDIALG+GG P+GR+VEIY
Sbjct: 1   KALAAALAQIEKQFGKGSIMKLGD-AEAKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQA
Sbjct: 60  GPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+
Sbjct: 120 LEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRT 179

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVK
Sbjct: 180 NCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVK 239

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           VVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G ++GQG
Sbjct: 240 VVKNKVSPPFRESIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGDKIGQG 295


>gi|189485625|ref|YP_001956566.1| recombinase A [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|170287584|dbj|BAG14105.1| recombinase A [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 354

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 213/328 (64%), Positives = 269/328 (82%), Gaps = 1/328 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K KAL+ ALSQI++ +GK AIM+LG + S  E ++ + +G+L LDIA+GIGG P+
Sbjct: 1   MAKDEKLKALDLALSQIEKDFGKEAIMRLGEKHS-KERVDSIPTGALPLDIAIGIGGIPR 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTTLAL  +A++QK GG  A++DAEHA+D  YA+KLGVD+ NLLISQ
Sbjct: 60  GRIIEIYGPESSGKTTLALCMVAEAQKLGGIAAYIDAEHAMDPEYAQKLGVDINNLLISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+GEQ LEI D L+RSGAVDIIV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL
Sbjct: 120 PDSGEQGLEIADKLIRSGAVDIIVVDSVAALVPKAEIEGEMGDSFVGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           TS+IS+SK  +VFINQ+R KIGVM+GSPETT GG ALKFYSSVRLDIRR+ SIK  D I 
Sbjct: 180 TSNISKSKTSIVFINQLRQKIGVMWGSPETTPGGLALKFYSSVRLDIRRIESIKKGDEIL 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ RVKVVKNK+A+PFKQ EF+I++G+GI   G LID+GV   I++K+GA+FS+ G+RL
Sbjct: 240 GNRVRVKVVKNKVAAPFKQAEFEIIFGQGIDKLGYLIDMGVNDGIIEKAGAFFSYNGERL 299

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQN 334
           GQGR+N K +L EN  +A  IE+ +R+ 
Sbjct: 300 GQGRDNVKTYLSENSAVAGEIEAKIREK 327


>gi|48781|emb|CAA39098.1| recA [Legionella pneumophila]
          Length = 323

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 207/324 (63%), Positives = 263/324 (81%), Gaps = 1/324 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M++G   ++   IE +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L  IA+ Q
Sbjct: 1   MRMGD-STVSRDIEAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLQVIAECQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGT AF+DAEHALD  YA+KLGV +  LL+SQPDTGEQALEITDMLVRS AVD+++ID
Sbjct: 60  KMGGTAAFIDAEHALDPSYAQKLGVKVDELLVSQPDTGEQALEITDMLVRSAAVDVVIID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I RS  +++FINQ+RMKIGVMFG
Sbjct: 120 SVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKRSNTLVIFINQIRMKIGVMFG 179

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           SPETTTGGNALKFY+SVRLDIRR+GSIK  + I G++TRVKVVKNK+A PFK  EFDI+Y
Sbjct: 180 SPETTTGGNALKFYASVRLDIRRIGSIKKGEEILGSETRVKVVKNKVAPPFKMTEFDILY 239

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
            EGIS   E+I+LGV+ ++++KSGAW+S+K +++GQG+EN +++L+EN ++A  +E  +R
Sbjct: 240 NEGISRESEIINLGVQLNLIEKSGAWYSYKQEKIGQGKENVRLYLKENPQVAAELEQQIR 299

Query: 333 QNAGLVADSLLQEPAINTKDDADK 356
                   S+L   + +  +  D 
Sbjct: 300 TELLEKKLSVLASSSEDLFETIDD 323


>gi|320103501|ref|YP_004179092.1| RecA protein [Isosphaera pallida ATCC 43644]
 gi|319750783|gb|ADV62543.1| RecA protein [Isosphaera pallida ATCC 43644]
          Length = 389

 Score =  336 bits (861), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 196/352 (55%), Positives = 273/352 (77%), Gaps = 8/352 (2%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + KAL  A+SQI++ +G GAIM++G    +   +E +SSG+L LD+ALG  GFP+GRIVE
Sbjct: 45  EDKALLNAISQIEKAFGAGAIMKMGENSHL--EVEGISSGALSLDLALGGKGFPRGRIVE 102

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           ++GPESSGKTT+AL  ++ +QK GG  AF+DAEHALD  + +KLGV++++LL+SQP   E
Sbjct: 103 LFGPESSGKTTIALQAVSNAQKLGGVAAFIDAEHALDPSWCKKLGVNIESLLVSQPSCAE 162

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           +AL+I +MLV S AVDIIV+DSVAAL P++EIEG++G+S  G+QARLMSQALRKLT +IS
Sbjct: 163 EALQIAEMLVMSNAVDIIVVDSVAALVPKSEIEGEIGDSFVGVQARLMSQALRKLTPAIS 222

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           RSKC+L+FINQ+R KIGVMFGSPETT GG ALKFYSS+R+D+RR+GS+K+ D  TGN+ +
Sbjct: 223 RSKCVLIFINQIREKIGVMFGSPETTPGGRALKFYSSLRIDVRRIGSVKEGDEATGNRVK 282

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNK+A PF+  EFDIM+ +GIS  G+L+DL +   +V+K+G+WFS+   RLGQGRE
Sbjct: 283 VKIVKNKIAPPFRVCEFDIMFNQGISREGDLLDLALADKLVEKTGSWFSYGDLRLGQGRE 342

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           NSK++L+E+ E+A+ I + +      +A  + +  A  +  D D +  + +E
Sbjct: 343 NSKLYLKEHPELADEIAAKV------IAKRMKENGAFISGGDGDGEAEEPLE 388


>gi|258647628|ref|ZP_05735097.1| protein RecA [Prevotella tannerae ATCC 51259]
 gi|260852441|gb|EEX72310.1| protein RecA [Prevotella tannerae ATCC 51259]
          Length = 342

 Score =  336 bits (861), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 204/326 (62%), Positives = 260/326 (79%), Gaps = 2/326 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL+AA+++I++ +GKG+IM+L  +    E IEV+ +GS+ L+ ALG+GG+PKGRI
Sbjct: 13  SEKLKALQAAMAKIEKDFGKGSIMKLDDEE--VEDIEVIPTGSIALNDALGVGGYPKGRI 70

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPE SGKTTLA+H IA++Q+ GG  AF+DAEHA D  YA KLGV+L  LLISQPD 
Sbjct: 71  IEIYGPEGSGKTTLAIHAIAEAQRRGGIAAFIDAEHAFDRFYAEKLGVNLSELLISQPDN 130

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D L+RS A+DIIVIDSVAALTP+AEIEGDMG++  G+QARLMSQALRKLTS+
Sbjct: 131 GEQALEIADQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTST 190

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           IS++    +FINQ+R KIG+ FG+PETTTGGNALKFYSSVRLDIR+  S+KD D + GN 
Sbjct: 191 ISKTNTTCIFINQLREKIGITFGNPETTTGGNALKFYSSVRLDIRKATSLKDGDHVYGNL 250

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            RVKVVKNK+A PF++VEF+I +GEGIS  GE++DLGV+  I+ KSG+WFS+   RL QG
Sbjct: 251 VRVKVVKNKVAPPFRKVEFEITFGEGISHIGEIVDLGVELEIIKKSGSWFSYGETRLCQG 310

Query: 310 RENSKIFLRENIEIAENIESLLRQNA 335
           R+  K  L +NIE+ E IE  ++   
Sbjct: 311 RDALKRLLADNIELTEEIEEQIKAAL 336


>gi|15639679|ref|NP_219129.1| recombinase A [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189025917|ref|YP_001933689.1| recombinase A [Treponema pallidum subsp. pallidum SS14]
 gi|6093943|sp|O83690|RECA_TREPA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238689340|sp|B2S3T1|RECA_TREPS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|3322995|gb|AAC65660.1| recA protein (recA) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189018492|gb|ACD71110.1| protein RecA [Treponema pallidum subsp. pallidum SS14]
          Length = 407

 Score =  336 bits (861), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 196/360 (54%), Positives = 277/360 (76%), Gaps = 6/360 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +  +K KALEAA  QI++ +G+G++M+LG +    +G+EV+ +G++ LD ALGIGG+P+G
Sbjct: 14  SFEEKMKALEAARLQIEKQFGQGSLMKLG-KDDAVQGVEVIPTGNILLDEALGIGGYPRG 72

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EI+GPESSGKTTLALH +A++QK GG  AF+DAEHALD  YA+ LGV + +L ISQP
Sbjct: 73  RIIEIFGPESSGKTTLALHAVAEAQKRGGIAAFIDAEHALDPQYAKDLGVSVGDLWISQP 132

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI + LVRSGAVDIIV+DSVAALTP+AEI+GDMG++  G+ ARLMSQALRKLT
Sbjct: 133 DTGEQALEIAESLVRSGAVDIIVVDSVAALTPQAEIQGDMGDAHVGLIARLMSQALRKLT 192

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SIT 246
           S I++SKC L+FINQ+RMKIG+MFG+PETTTGG ALKFYSSVR+++R+V ++   D    
Sbjct: 193 SIINKSKCTLIFINQLRMKIGIMFGNPETTTGGIALKFYSSVRIEVRKVETLSRGDEEAW 252

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ R+++VKNKMA PF++VE +I++G+G S F  L+D  VK  I++K GAW++++ +++
Sbjct: 253 GNKVRIRIVKNKMAPPFRKVETEILFGKGFSAFSCLLDAAVKQEIIEKKGAWYAYREEKI 312

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNA----GLVADSLLQEPAINTKDDADKDDTDNV 362
           GQGR+N+  FL++N++I   IE  +R         ++      PA++ +   ++ D   +
Sbjct: 313 GQGRDNAVGFLQQNMDITLEIERAVRTKLFPKQAFISSFQEHRPALSLEASPEESDAKTL 372


>gi|166153991|ref|YP_001654109.1| recombinase A [Chlamydia trachomatis 434/Bu]
 gi|166154866|ref|YP_001653121.1| recombinase A [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|255349037|ref|ZP_05381044.1| recombinase A [Chlamydia trachomatis 70]
 gi|255503575|ref|ZP_05381965.1| recombinase A [Chlamydia trachomatis 70s]
 gi|255507255|ref|ZP_05382894.1| recombinase A [Chlamydia trachomatis D(s)2923]
 gi|301335189|ref|ZP_07223433.1| recombinase A [Chlamydia trachomatis L2tet1]
 gi|238687395|sp|B0B8M5|RECA_CHLT2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238687443|sp|B0BAA4|RECA_CHLTB RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|557482|gb|AAA75588.1| RecA [Chlamydia trachomatis]
 gi|571502|gb|AAA74947.1| RecA [Chlamydia trachomatis]
 gi|607061|emb|CAA83539.1| recA [Chlamydia trachomatis]
 gi|165929979|emb|CAP03462.1| recombinase A [Chlamydia trachomatis 434/Bu]
 gi|165930854|emb|CAP06416.1| recombinase A [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|289525693|emb|CBJ15174.1| recombinase A [Chlamydia trachomatis Sweden2]
 gi|296435262|gb|ADH17440.1| recombinase A [Chlamydia trachomatis E/150]
 gi|296438981|gb|ADH21134.1| recombinase A [Chlamydia trachomatis E/11023]
          Length = 352

 Score =  336 bits (861), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 187/355 (52%), Positives = 261/355 (73%), Gaps = 7/355 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M++ D+ +ALEAA++ I++ +G G+IM LG   S  E I  + +G+L LD+ALGIGG PK
Sbjct: 1   MSVPDRKRALEAAIAYIEKQFGAGSIMSLGKHSSAHE-ISTIKTGALSLDLALGIGGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEI+GPESSGKTTLA H +A +QK GG  A++DAEHALD  YA  +G ++ +L+ISQ
Sbjct: 60  GRIVEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPNYAALIGANINDLMISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GE AL I ++L RSGAVD+IVIDSVAAL P++E+EG++G+   G+QAR+MSQALRKL
Sbjct: 120 PDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGEIGDVHVGLQARMMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI- 245
           T++++R+    +FINQ+R KIGV FG+PETTTGG ALKFYSS+R+DIRR+GSIK  ++  
Sbjct: 180 TATLARTNTCAIFINQIREKIGVSFGNPETTTGGRALKFYSSIRIDIRRIGSIKGGENFD 239

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+ +VKV KNK+A PF+  EFDI++ EGIS  G +IDL V+ +I+DK G+WF+++ ++
Sbjct: 240 IGNRIKVKVAKNKLAPPFRTAEFDILFNEGISSAGCIIDLAVEKNIIDKKGSWFNYQDRK 299

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           LGQGRE  +  L+ N E+   +E  + ++         Q PA    D   ++  +
Sbjct: 300 LGQGREAVREELKRNKELFHELERRIYESV-----QASQAPAAACVDSESREVAE 349


>gi|86605782|ref|YP_474545.1| recombinase A [Synechococcus sp. JA-3-3Ab]
 gi|86554324|gb|ABC99282.1| recA protein [Synechococcus sp. JA-3-3Ab]
          Length = 358

 Score =  336 bits (861), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 188/327 (57%), Positives = 253/327 (77%), Gaps = 4/327 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL+  L QI+R +GKGAIM+LG    +   +E + SG++ LD+A+G GG+PKGRI
Sbjct: 3   SEKRKALDQVLGQIERNFGKGAIMRLGDAAQMR--VETIPSGAITLDLAMG-GGYPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +E++GPESSGKT++ALH IA+ QK GGT AFVDAEHALD  YA  LGVD++NLLISQPDT
Sbjct: 60  IEVFGPESSGKTSVALHAIAEVQKRGGTAAFVDAEHALDPAYAAALGVDIQNLLISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GE ALEI D LVRS AVDI+V+DSVAAL PRAEIEGDMG++  G+QARLMSQALRK+  +
Sbjct: 120 GEAALEIVDQLVRSAAVDIVVVDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKIAGN 179

Query: 190 ISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +S++  I++F+NQ+R KIG + +G  ETTTGGNALKFY+SVRLDIRRV ++K      G 
Sbjct: 180 VSKTGSIVLFLNQLRSKIGGIGYGLQETTTGGNALKFYASVRLDIRRVQTLKKGAEEYGI 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + RVKVVKNK+A PF++ EFDI++G+GIS  G ++DL  +  I+ + G+W+S+K + + Q
Sbjct: 240 RARVKVVKNKVAPPFRRAEFDIIFGQGISNIGCIVDLAEEMGILKRRGSWYSYKEENVAQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNA 335
           GR+N  ++L+E  EI   +E+ +R+  
Sbjct: 300 GRDNLVVYLKEKPEILAEVEAAVREKL 326


>gi|15605382|ref|NP_220168.1| recombinase A [Chlamydia trachomatis D/UW-3/CX]
 gi|290463282|sp|P0CD80|RECA_CHLTR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|3329099|gb|AAC68827.1| hypothetical protein CT_650 [Chlamydia trachomatis D/UW-3/CX]
 gi|296436189|gb|ADH18363.1| recombinase A [Chlamydia trachomatis G/9768]
 gi|296437118|gb|ADH19288.1| recombinase A [Chlamydia trachomatis G/11222]
 gi|296438049|gb|ADH20210.1| recombinase A [Chlamydia trachomatis G/11074]
 gi|297140551|gb|ADH97309.1| recombinase A [Chlamydia trachomatis G/9301]
          Length = 352

 Score =  336 bits (861), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 184/350 (52%), Positives = 259/350 (74%), Gaps = 2/350 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M++ D+ +ALEAA++ I++ +G G+IM LG   S  E I  + +G+L LD+ALGIGG PK
Sbjct: 1   MSVPDRKRALEAAIAYIEKQFGAGSIMSLGKHSSAHE-ISTIKTGALSLDLALGIGGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEI+GPESSGKTTLA H +A +QK GG  A++DAEHALD  YA  +G ++ +L+ISQ
Sbjct: 60  GRIVEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPNYAALIGANINDLMISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GE AL I ++L RSGAVD+IVIDSVAAL P++E+EG++G+   G+QAR+MSQALRKL
Sbjct: 120 PDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGEIGDVHVGLQARMMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI- 245
           T++++R+    +FINQ+R KIGV FG+PETTTGG ALKFYSS+R+DIRR+GSIK  ++  
Sbjct: 180 TATLARTNTCAIFINQIREKIGVSFGNPETTTGGRALKFYSSIRIDIRRIGSIKGGENFD 239

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+ +VKV KNK+A PF+  EFDI++ EGIS  G +IDL V+ +I+DK G+WF+++ ++
Sbjct: 240 IGNRIKVKVAKNKLAPPFRTAEFDILFNEGISSAGCIIDLAVEKNIIDKKGSWFNYQDRK 299

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           LGQGRE  +  L+ N E+   +E  + ++               +++ A+
Sbjct: 300 LGQGREAVREELKRNKELFHELERRIYESVQASQVPAAACVDAESREVAE 349


>gi|256830943|ref|YP_003159671.1| recA protein [Desulfomicrobium baculatum DSM 4028]
 gi|256580119|gb|ACU91255.1| recA protein [Desulfomicrobium baculatum DSM 4028]
          Length = 353

 Score =  336 bits (860), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 200/355 (56%), Positives = 267/355 (75%), Gaps = 4/355 (1%)

Query: 1   MDYRKEMNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIAL 59
           M   K ++  D + +ALE AL+ I+R YG G++M+L       + + V+ +GS+GLD+AL
Sbjct: 1   MARPKNVSPEDARREALETALATIERRYGLGSVMRLSDTS--HQVVPVIPTGSIGLDLAL 58

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           G+GG P+GR+ EI+GPESSGKTT ALH IA++QK GG  AF+DAEHALD  YAR+LGV  
Sbjct: 59  GVGGIPRGRVTEIFGPESSGKTTQALHIIAEAQKRGGVAAFIDAEHALDINYARRLGVKT 118

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
           ++LLISQPD GEQALEI DMLVRS AVD++V+DSVAAL P+AE+EG MGE+  G QARLM
Sbjct: 119 EDLLISQPDYGEQALEIADMLVRSSAVDVVVVDSVAALIPQAELEGSMGETQVGGQARLM 178

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           S A+RKLT +I +S+  ++FINQ+RMKI    +GSPETTTGGNALKFY+SVRLD+RR+ +
Sbjct: 179 SHAMRKLTGTIHKSRTSIIFINQLRMKIGMTGYGSPETTTGGNALKFYASVRLDLRRIQT 238

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           +KDK+   GN+ RVKVVKNKMA PF++ E+D+++G GIS  GELIDLGV+  +VDKSGAW
Sbjct: 239 LKDKEESYGNRVRVKVVKNKMAPPFREAEYDVLFGTGISRVGELIDLGVEQGVVDKSGAW 298

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           ++F  +RLGQG+EN + FL++N E+   IE  L ++ G+          +    +
Sbjct: 299 YAFGSERLGQGKENVRAFLQDNDELRMQIERALLEHLGMPVAEDAAGAVVPEAAE 353


>gi|257812089|gb|ACV69912.1| RecA [Pseudomonas aeruginosa]
          Length = 321

 Score =  336 bits (860), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 199/311 (63%), Positives = 255/311 (81%), Gaps = 2/311 (0%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           R +GKG++M +G      + I  +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL 
Sbjct: 1   RQFGKGSVMLMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLT 58

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS 
Sbjct: 59  LSVIAEAQKQGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSN 118

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           AVD+I++DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T +I  + C+++FINQ+R
Sbjct: 119 AVDVIIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNIKNANCLVIFINQIR 178

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK++ PF+
Sbjct: 179 MKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVSPPFR 238

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           Q EF I+YG+GI   GE+IDLGV+  +V+KSGAW+S++G ++G G+ N+  +L +N EI 
Sbjct: 239 QAEFQILYGKGIYRTGEIIDLGVQLGLVEKSGAWYSYQGSKIGPGKANAAKYLEDNPEIG 298

Query: 325 ENIESLLRQNA 335
             +E  +R   
Sbjct: 299 SVLEKTIRDQL 309


>gi|296803020|gb|ADH51586.1| DNA recombinase [Burkholderia contaminans]
          Length = 299

 Score =  336 bits (860), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 213/300 (71%), Positives = 261/300 (87%), Gaps = 1/300 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           +G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK 
Sbjct: 1   MGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKL 59

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSV
Sbjct: 60  GGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSV 119

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+P
Sbjct: 120 AALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNP 179

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           ETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGE
Sbjct: 180 ETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGE 239

Query: 275 GISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
           GIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ +R++
Sbjct: 240 GISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIRES 299


>gi|262195048|ref|YP_003266257.1| recA protein [Haliangium ochraceum DSM 14365]
 gi|262078395|gb|ACY14364.1| recA protein [Haliangium ochraceum DSM 14365]
          Length = 375

 Score =  336 bits (860), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 201/324 (62%), Positives = 256/324 (79%), Gaps = 2/324 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +KSK LE AL  I++ +G GAIM+LG  G     + V+ +GSL LDIALG+GGFP+GRI
Sbjct: 11  SNKSKILEDALRVIKKQFGNGAIMRLG--GQDVTQVAVIPTGSLALDIALGVGGFPRGRI 68

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VE+YGPESSGKTTL LH IA++Q  GG CAF+DAEHALD+ YA++LGV L +LL+SQPD 
Sbjct: 69  VEVYGPESSGKTTLTLHAIAEAQARGGVCAFIDAEHALDTSYAQRLGVQLDDLLVSQPDC 128

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVR+GA+D+IV+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRKLT+ 
Sbjct: 129 GEQALEIADTLVRTGAIDLIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKLTAG 188

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++R+   +VFINQ+R+KIG +FG+PETTTGGNALKFY+SVRLDIR+   IK  D + G  
Sbjct: 189 VARTNTTVVFINQLRLKIGTVFGNPETTTGGNALKFYASVRLDIRKGKPIKHNDEVVGAG 248

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            RVKVVKNKMA PF++  F+I+YG G++   EL+D G +  +V+KSGAW+S++GQRLGQG
Sbjct: 249 VRVKVVKNKMAPPFREAHFEILYGSGVNKLAELVDTGERMGLVNKSGAWYSYEGQRLGQG 308

Query: 310 RENSKIFLRENIEIAENIESLLRQ 333
           RE +   L  N E+AE +   L +
Sbjct: 309 RERAAEHLAANAELAERLRGTLLE 332


>gi|76789389|ref|YP_328475.1| recombinase A [Chlamydia trachomatis A/HAR-13]
 gi|237803079|ref|YP_002888273.1| recombinase A [Chlamydia trachomatis B/Jali20/OT]
 gi|237805000|ref|YP_002889154.1| recombinase A [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311475|ref|ZP_05354045.1| recombinase A [Chlamydia trachomatis 6276]
 gi|255317776|ref|ZP_05359022.1| recombinase A [Chlamydia trachomatis 6276s]
 gi|123758569|sp|Q3KL45|RECA_CHLTA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|76167919|gb|AAX50927.1| RecA [Chlamydia trachomatis A/HAR-13]
 gi|231273300|emb|CAX10215.1| recombinase A [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274313|emb|CAX11108.1| recombinase A [Chlamydia trachomatis B/Jali20/OT]
          Length = 352

 Score =  335 bits (859), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 183/329 (55%), Positives = 254/329 (77%), Gaps = 2/329 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M++ D+ +ALEAA++ I++ +G G+IM LG   S  E I  + +G+L LD+ALGIGG PK
Sbjct: 1   MSVPDRKRALEAAIAYIEKQFGAGSIMSLGKHSSAHE-ISTIKTGALSLDLALGIGGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEI+GPESSGKTTLA H +A +QK GG  A++DAEHALD  YA  +G ++ +L+ISQ
Sbjct: 60  GRIVEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPNYAALIGANINDLMISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GE AL I ++L RSGAVD+IVIDSVAAL P++E+EG++G+   G+QAR+MSQALRKL
Sbjct: 120 PDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGEIGDVHVGLQARMMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI- 245
           T++++R+    +FINQ+R KIGV FG+PETTTGG ALKFYSS+R+DIRR+GSIK  ++  
Sbjct: 180 TATLARTNTCAIFINQIREKIGVSFGNPETTTGGRALKFYSSIRIDIRRIGSIKGGENFD 239

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+ +VKV KNK+A PF+  EFDI++ EGIS  G +IDL V+ +I+DK G+WF+++ ++
Sbjct: 240 IGNRIKVKVAKNKLAPPFRTAEFDILFNEGISSAGCIIDLAVEKNIIDKKGSWFNYQDRK 299

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQN 334
           LGQGRE  +  L+ N E+   +E  + ++
Sbjct: 300 LGQGREAVREELKRNKELFHELERCIYES 328


>gi|123969301|ref|YP_001010159.1| recombinase A [Prochlorococcus marinus str. AS9601]
 gi|166220667|sp|A2BTE1|RECA_PROMS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|91070237|gb|ABE11157.1| RecA bacterial DNA recombination protein [uncultured
           Prochlorococcus marinus clone HF10-11H11]
 gi|123199411|gb|ABM71052.1| RecA bacterial DNA recombination protein [Prochlorococcus marinus
           str. AS9601]
          Length = 365

 Score =  335 bits (859), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 188/321 (58%), Positives = 256/321 (79%), Gaps = 3/321 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL   L QI+R +G+G+IM+LG    +   +E +S+G+L LD+ALG GG+PKGR+VE+YG
Sbjct: 17  ALSLVLGQIERNFGRGSIMRLGDASRM--KVETISTGALTLDLALG-GGYPKGRVVEVYG 73

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL LH IA+ QK GG  AFVDAEHALD +YA  LGVD++NLL+SQPDTGE AL
Sbjct: 74  PESSGKTTLTLHAIAEVQKNGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMAL 133

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EI D L+RS AVD++V+DSVAALTPRAEIEG+MG+ + G QARLMSQA+RK+T +I +S 
Sbjct: 134 EIVDQLIRSSAVDLVVVDSVAALTPRAEIEGEMGDHVIGSQARLMSQAMRKITGNIGKSG 193

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K      G + +VKV
Sbjct: 194 CTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRAKVKV 253

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
            KNK+A PF+  EFDI++G+GIS  G L+DL  + +I+ + GAW+S++G+ +GQGR+N+ 
Sbjct: 254 AKNKVAPPFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYSYEGENIGQGRDNTI 313

Query: 315 IFLRENIEIAENIESLLRQNA 335
           I+L +N+EI   +ES++++  
Sbjct: 314 IWLDQNLEIRNKVESMVKEKL 334


>gi|78780039|ref|YP_398151.1| recombinase A [Prochlorococcus marinus str. MIT 9312]
 gi|123741423|sp|Q318I0|RECA_PROM9 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|78713538|gb|ABB50715.1| RecA protein [Prochlorococcus marinus str. MIT 9312]
          Length = 365

 Score =  335 bits (859), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 188/321 (58%), Positives = 256/321 (79%), Gaps = 3/321 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL   L QI+R +G+G+IM+LG    +   +E +S+G+L LD+ALG GG+PKGR+VE+YG
Sbjct: 17  ALSLVLGQIERNFGRGSIMRLGDASRM--KVETISTGALTLDLALG-GGYPKGRVVEVYG 73

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL LH IA+ QK GG  AFVDAEHALD +YA  LGVD++NLL+SQPDTGE AL
Sbjct: 74  PESSGKTTLTLHAIAEVQKNGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMAL 133

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EI D L+RS AVD++V+DSVAALTPRAEIEG+MG+ + G QARLMSQA+RK+T +I +S 
Sbjct: 134 EIVDQLIRSSAVDLVVVDSVAALTPRAEIEGEMGDHVIGSQARLMSQAMRKITGNIGKSG 193

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K      G + +VKV
Sbjct: 194 CTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRAKVKV 253

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
            KNK+A PF+  EFDI++G+GIS  G L+DL  + +I+ + GAW+S++G+ +GQGR+N+ 
Sbjct: 254 AKNKVAPPFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYSYEGENIGQGRDNTI 313

Query: 315 IFLRENIEIAENIESLLRQNA 335
           I+L +N+EI   +ES++++  
Sbjct: 314 IWLDQNLEIRNKVESMVKEKL 334


>gi|297565306|ref|YP_003684278.1| recA protein [Meiothermus silvanus DSM 9946]
 gi|296849755|gb|ADH62770.1| recA protein [Meiothermus silvanus DSM 9946]
          Length = 349

 Score =  335 bits (859), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 181/327 (55%), Positives = 251/327 (76%), Gaps = 3/327 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALE AL  I++ +GKGA+M+LG      + ++V+S+GSLGLD+ALGIGG P+GRI+
Sbjct: 4   EKQKALEGALKSIEKQFGKGAVMRLGESPR--QQVDVISTGSLGLDMALGIGGIPRGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPES GKTTL+L  +A++Q+ GG  AFVDAEHALD IYA+ LGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESGGKTTLSLSIVAEAQRKGGVAAFVDAEHALDPIYAKSLGVNIDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI ++L RSGA+D+IV+DSVAAL P+AEIEG MG++  G+QARLMSQALRKLT+++
Sbjct: 122 EQALEIVELLTRSGAIDVIVVDSVAALVPQAEIEGQMGDAFVGIQARLMSQALRKLTAAL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS-IKDKDSITGNQ 249
           S+S    +FINQ+R K+GVM+G+PETT GG ALKFY+SVRLD+R+ G  IK  +   GN+
Sbjct: 182 SKSNTACIFINQIREKVGVMYGNPETTPGGRALKFYASVRLDVRKQGQPIKVGNDAIGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKV KNK+A PF++ E ++ +G+GI    +L+ + +   +++KSG+W S+   RLGQG
Sbjct: 242 VKVKVTKNKLAPPFREHEIELYFGKGIDPMADLVTVAIATGVIEKSGSWLSYGETRLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336
           +E +   LR   ++A+ I   +   AG
Sbjct: 302 KEKAADLLRTAPQMAQEIREKVLAQAG 328


>gi|87307365|ref|ZP_01089510.1| RecA protein (Recombinase A) [Blastopirellula marina DSM 3645]
 gi|87290105|gb|EAQ81994.1| RecA protein (Recombinase A) [Blastopirellula marina DSM 3645]
          Length = 392

 Score =  335 bits (859), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 183/335 (54%), Positives = 252/335 (75%), Gaps = 3/335 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L+  L QI++ +G+GAIM LGS  ++   IE + +GS+ LD+ALG  G P+GR++EI+GP
Sbjct: 48  LKTTLQQIEKSFGEGAIMPLGSNHAV---IEGIPTGSISLDLALGGKGLPRGRVIEIFGP 104

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLALH IAQ+Q  GG  AFVDAEHALD  +A+KLGV+L+ LL+SQP +GE+ L+
Sbjct: 105 ESSGKTTLALHVIAQAQAMGGIAAFVDAEHALDPSWAKKLGVELETLLVSQPSSGEEGLQ 164

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           IT+MLV+S AVD+IV+DSVAAL P+AE+ G++G S  G+QARLMSQA+RKLT  IS+SK 
Sbjct: 165 ITEMLVKSNAVDVIVVDSVAALVPKAELNGEIGASHVGLQARLMSQAMRKLTGVISKSKT 224

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           I++FINQ+R K+GVMFGSPETT GG ALKFY S R+D+RR+G +KD + + G + R K+V
Sbjct: 225 IVIFINQIREKVGVMFGSPETTPGGRALKFYCSCRVDVRRIGQLKDGEDVVGQRVRCKIV 284

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK+A PF+  EFD+M+  GIS+ G+++DL ++A IV +SGAWF +   +LGQG+E ++ 
Sbjct: 285 KNKVAPPFRIAEFDMMHSNGISYEGDILDLAIEAKIVARSGAWFRYGDIQLGQGKEKARA 344

Query: 316 FLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           FL EN  + E ++  +   AG   + L     +  
Sbjct: 345 FLMENPAMTEELKQKVLIEAGHGGEKLFDAAPVKQ 379


>gi|327540506|gb|EGF27088.1| recombinase A [Rhodopirellula baltica WH47]
          Length = 369

 Score =  335 bits (859), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 182/355 (51%), Positives = 262/355 (73%), Gaps = 3/355 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
             I++K   L+  L QI++ +G GAIM LG+   +   I+ +S+GSL LD+ALG  G P+
Sbjct: 17  KTILEKEPGLKTTLQQIEKSFGDGAIMPLGASQKLT--IDCISTGSLSLDMALGGKGIPR 74

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E++GPESSGKTTLALH  A++QK+GG  A +DAEHA D  +A+KLGV+L +LL+SQ
Sbjct: 75  GRIIEVFGPESSGKTTLALHIGAEAQKSGGIAAIIDAEHAFDPSWAKKLGVELDSLLVSQ 134

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P +GE+A++I +MLV+S AVD+I+IDSVAAL P+AE+EG++G+S  G+QARLMSQ++RKL
Sbjct: 135 PSSGEEAMQICEMLVKSNAVDVIIIDSVAALVPKAELEGEIGDSHVGLQARLMSQSMRKL 194

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T +I++SK  +VFINQ+R K+GVMFGSPETT GG ALKFY S R+D+RR+GS+KD +   
Sbjct: 195 TGAIAKSKSAVVFINQIREKVGVMFGSPETTPGGRALKFYCSCRIDVRRIGSLKDGEEQV 254

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G + + K+VKNK+A PF+  EFD+M+  GISF G+L+DLG +  +V++SG+WF +    L
Sbjct: 255 GQRVKAKIVKNKVAPPFRIAEFDMMHSNGISFEGDLLDLGTENKVVNRSGSWFKYGDTYL 314

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           GQG+E ++ FL EN ++++ I+  +    G VA  L  +   + +   D +   N
Sbjct: 315 GQGKEKARNFLIENPDVSDEIKQKVLAAGGFVA-PLEVDADESEEAVEDGEAVAN 368


>gi|32477199|ref|NP_870193.1| recombinase A [Rhodopirellula baltica SH 1]
 gi|60393013|sp|Q7UJJ0|RECA_RHOBA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|32447750|emb|CAD77268.1| RecA protein (Recombinase A) [Rhodopirellula baltica SH 1]
          Length = 375

 Score =  335 bits (858), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 182/355 (51%), Positives = 262/355 (73%), Gaps = 3/355 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
             I++K   L+  L QI++ +G GAIM LG+   +   I+ +S+GSL LD+ALG  G P+
Sbjct: 23  KTILEKEPGLKTTLQQIEKSFGDGAIMPLGASQKLT--IDCISTGSLSLDMALGGKGIPR 80

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E++GPESSGKTTLALH  A++QK+GG  A +DAEHA D  +A+KLGV+L +LL+SQ
Sbjct: 81  GRIIEVFGPESSGKTTLALHIGAEAQKSGGIAAIIDAEHAFDPSWAKKLGVELDSLLVSQ 140

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P +GE+A++I +MLV+S AVD+I+IDSVAAL P+AE+EG++G+S  G+QARLMSQ++RKL
Sbjct: 141 PSSGEEAMQICEMLVKSNAVDVIIIDSVAALVPKAELEGEIGDSHVGLQARLMSQSMRKL 200

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T +I++SK  +VFINQ+R K+GVMFGSPETT GG ALKFY S R+D+RR+GS+KD +   
Sbjct: 201 TGAIAKSKSAVVFINQIREKVGVMFGSPETTPGGRALKFYCSCRIDVRRIGSLKDGEEQV 260

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G + + K+VKNK+A PF+  EFD+M+  GISF G+L+DLG +  +V++SG+WF +    L
Sbjct: 261 GQRVKAKIVKNKVAPPFRIAEFDMMHSNGISFEGDLLDLGTENKVVNRSGSWFKYGDTYL 320

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           GQG+E ++ FL EN ++++ I+  +    G VA  L  +   + +   D +   N
Sbjct: 321 GQGKEKARNFLIENPDVSDEIKQKVLAAGGFVA-PLEVDADESEEAVEDGEAVAN 374


>gi|308237913|emb|CBK52103.1| RecA protein [Acidithiobacillus ferrooxidans]
          Length = 286

 Score =  335 bits (858), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 208/286 (72%), Positives = 250/286 (87%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           V S+GSLGLD+ALG+GG P+GR+VEIYGPESSGKTTL LH IA  Q  GGT AF+DAEHA
Sbjct: 1   VYSTGSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLTLHAIASCQAAGGTAAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YA KLGVDL+NLLISQPDTGEQALEI DMLVRSGAVD+IVIDSVAALTP+AEIEGD
Sbjct: 61  LDPGYAHKLGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGD 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+S  G+QARLMSQALRKLT++ISR+  +++FINQ+RMKIGVM+GSPETTTGGNALKFY
Sbjct: 121 MGDSHVGLQARLMSQALRKLTANISRTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFY 180

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
           +SVRLDIRR+G+IK  D + GN TRVKVVKNK+A PF++ EF I YGEGIS   EL+DLG
Sbjct: 181 ASVRLDIRRIGAIKKSDEVVGNDTRVKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLG 240

Query: 287 VKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           VK  IV+KSGAW+S++G+R+GQG++N++ +L+E+ E+A NIE  +R
Sbjct: 241 VKFDIVEKSGAWYSYQGERIGQGKDNARQYLKEHPELAANIEQRIR 286


>gi|166079840|gb|ABY81642.1| recombinase A [Staphylococcus capitis]
          Length = 320

 Score =  335 bits (858), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 193/321 (60%), Positives = 246/321 (76%), Gaps = 2/321 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKGA+M+LG               S+ +D ALG GG+PKGRI+EIYGPESSGKTT+
Sbjct: 1   EKSFGKGAVMKLGDNKGRKVSSTSSG--SVTVDNALGAGGYPKGRIIEIYGPESSGKTTV 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALH IA+ QK GG  AF+DAEHALD +YA+ LGVD+ NL +SQPD GEQ LEI +  VRS
Sbjct: 59  ALHAIAEVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +IS+S    +FINQ+
Sbjct: 119 GAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAISKSNTTAIFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T++KVVKNK+A PF
Sbjct: 179 REKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRTKIKVVKNKVAPPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           +  E DIMYG+GIS  GELIDLGV+  IVDKSGAW+S+ G R+GQG+EN K +L+EN +I
Sbjct: 239 RVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGKENVKTYLKENPQI 298

Query: 324 AENIESLLRQNAGLVADSLLQ 344
            E I+  LR+  G+    + +
Sbjct: 299 KEEIDRKLREKLGIFDGDVDE 319


>gi|325971208|ref|YP_004247399.1| protein recA [Spirochaeta sp. Buddy]
 gi|324026446|gb|ADY13205.1| Protein recA [Spirochaeta sp. Buddy]
          Length = 361

 Score =  335 bits (858), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 205/368 (55%), Positives = 277/368 (75%), Gaps = 12/368 (3%)

Query: 1   MDYRKEMN----IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLD 56
           M   KE +    +  K +ALEAA  QI + +GKG++M+LG        I  +SSGSL LD
Sbjct: 1   MAKSKETSFPTDLNQKREALEAARIQIDKQFGKGSLMKLGDSDESL-DIGYISSGSLLLD 59

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
            ALGIGG+PKGR++EIYGPESSGKTTLALH IA+SQK GG  AF+DAEHA+D  YA+KLG
Sbjct: 60  EALGIGGYPKGRVIEIYGPESSGKTTLALHAIAESQKAGGIAAFIDAEHAMDPSYAKKLG 119

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           V++  L ISQPD+GEQALEI + LVRSGAVDIIV+DSVAALTP+AEI+GDMG+S  G+QA
Sbjct: 120 VNIDELWISQPDSGEQALEIAESLVRSGAVDIIVVDSVAALTPQAEIDGDMGDSHMGLQA 179

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           RLMSQALRKLT  +S+S   ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+++R++
Sbjct: 180 RLMSQALRKLTGLLSKSNTTIIFINQIRMKIGVMFGNPETTTGGNALKFYASVRIEVRKI 239

Query: 237 GSI-KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
            S+ K  D I GN+ R+KVVKNK++ PFK+VE D+++GEGIS+   ++D  +K  +++KS
Sbjct: 240 ESLSKGADDIIGNRVRIKVVKNKVSPPFKKVELDLLFGEGISYVASVLDAALKYEMLEKS 299

Query: 296 GAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           G+W+SF G+++GQGR+ +  FL++N ++  +++  LR      A    ++   + KD   
Sbjct: 300 GSWYSFNGEKIGQGRDKTLDFLKDNPDVVADLDVKLR------ALMFPKKVRESKKDREA 353

Query: 356 KDDTDNVE 363
           K +   +E
Sbjct: 354 KKEAAALE 361


>gi|15834644|ref|NP_296403.1| recombinase A [Chlamydia muridarum Nigg]
 gi|270284810|ref|ZP_06194204.1| recombinase A [Chlamydia muridarum Nigg]
 gi|270288839|ref|ZP_06195141.1| recombinase A [Chlamydia muridarum Weiss]
 gi|301336190|ref|ZP_07224392.1| recombinase A [Chlamydia muridarum MopnTet14]
 gi|11387034|sp|Q9PLS6|RECA_CHLMU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|7190059|gb|AAF38911.1| recA protein [Chlamydia muridarum Nigg]
          Length = 354

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 181/329 (55%), Positives = 255/329 (77%), Gaps = 2/329 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M++ D+ +ALEAA++ I++ +G G+IM LG   S  E I  + +G+L LD+ALGIGG PK
Sbjct: 1   MSVPDRKRALEAAIAYIEKQFGAGSIMSLGKHSSAHE-ISTIKTGALSLDLALGIGGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTLA H +A +QK GG  A++DAEHALD  YA  +G ++ +L+ISQ
Sbjct: 60  GRIIEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPNYAALIGANINDLMISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GE AL I ++L RSGAVD+IVIDSVAAL P++E+EG++G+   G+QAR+MSQALRKL
Sbjct: 120 PDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGEIGDVHVGLQARMMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI- 245
           T++++R+    +FINQ+R KIGV FG+PETTTGG ALKFYSS+R+DIRR+G+IK  ++  
Sbjct: 180 TATLARTNTCAIFINQIREKIGVSFGNPETTTGGRALKFYSSIRMDIRRIGAIKGGENFD 239

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+ +VKV KNK+A PF+  EFDI++ EGIS  G +IDL V+ +I+DK G+WF+++ ++
Sbjct: 240 IGNRIKVKVAKNKLAPPFRTAEFDILFNEGISSAGCIIDLAVEKNIIDKKGSWFNYQDRK 299

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQN 334
           LGQGRE  +  L+ N E+ + +E  + ++
Sbjct: 300 LGQGREAVREELKRNKELFQELERRIYES 328


>gi|91217991|ref|ZP_01254943.1| recombinase A [Psychroflexus torquis ATCC 700755]
 gi|91183849|gb|EAS70240.1| recombinase A [Psychroflexus torquis ATCC 700755]
          Length = 340

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 204/329 (62%), Positives = 263/329 (79%), Gaps = 4/329 (1%)

Query: 5   KEMNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           KE +  D K KAL+  L ++ + YGKG +M++  Q    + IE +SSGSLGL++ALG+GG
Sbjct: 3   KENSEKDAKLKALQLTLDKLDKTYGKGTVMKMSDQA--VQDIEAISSGSLGLNLALGVGG 60

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
           +P+GR+VEIYGPESSGKTTLALH IA++QK GG  AF+DAEHA D  YA+ L +D+ NL+
Sbjct: 61  YPRGRVVEIYGPESSGKTTLALHAIAEAQKAGGIAAFIDAEHAFDRTYAKNLNIDIDNLI 120

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           ISQPD GEQALEIT+ L+RSGA+DIIVIDSVAALTP++EIEG+MG+S  G+ ARLMSQAL
Sbjct: 121 ISQPDHGEQALEITENLIRSGAIDIIVIDSVAALTPKSEIEGEMGDSKMGLHARLMSQAL 180

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RK+TS+IS++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR   IK+ +
Sbjct: 181 RKMTSTISKTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKNSN 240

Query: 244 -SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
             + GN+TRVKVVKNK+A PFK  EFDIMYG G+S  GE+ID+GV   I+ K+G+WFS++
Sbjct: 241 SDVLGNKTRVKVVKNKVAPPFKMAEFDIMYGTGVSKIGEIIDIGVDYEIIKKAGSWFSYE 300

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLL 331
             +LGQGR+  K  L +N E+ E +E  +
Sbjct: 301 ETKLGQGRDAVKTLLLDNPELMEELEVKI 329


>gi|293400773|ref|ZP_06644918.1| RecA protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305799|gb|EFE47043.1| RecA protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 351

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 187/323 (57%), Positives = 258/323 (79%), Gaps = 2/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K   L  A+  I++ YGKG+IM+LG + ++   I+ +SSGS+ +D ALGIGG+PKGRI+E
Sbjct: 25  KDTLLSDAIKAIEKQYGKGSIMKLGDRAAV--EIDAISSGSIKIDEALGIGGYPKGRIIE 82

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH IA+ QK GG  AF+DAE+A+D +YA+KLGV++  L++SQPD+GE
Sbjct: 83  IYGPESSGKTTLALHAIAEVQKKGGRAAFIDAENAIDPVYAQKLGVNIDELILSQPDSGE 142

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL+IT+MLV+SGA+D++V+DSVAAL P+AE++G+MG+S  G+QARLMS+A+RKL+  ++
Sbjct: 143 QALDITEMLVKSGAIDLVVVDSVAALVPQAELDGEMGDSQVGLQARLMSKAMRKLSGVMN 202

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           RS+C  +FINQ+R K+GV++G+PETT GG ALKFYSSVRLDIRR  +IK+   I GN+  
Sbjct: 203 RSECTAIFINQLREKVGVVYGNPETTPGGRALKFYSSVRLDIRRSEAIKNGTEIIGNKVN 262

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNK+A PFK    +IMYGEGIS+  EL+DL V   IV KSGAWFS+ G+++GQG+E
Sbjct: 263 VKIVKNKVAPPFKTAAIEIMYGEGISYIAELLDLCVDHDIVMKSGAWFSYNGEKIGQGKE 322

Query: 312 NSKIFLRENIEIAENIESLLRQN 334
            +K  ++ N E+ E +++ L + 
Sbjct: 323 AAKNTIKSNPELLEELKTKLMEK 345


>gi|29840750|ref|NP_829856.1| recombinase A [Chlamydophila caviae GPIC]
 gi|33301490|sp|Q821E6|RECA_CHLCV RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|29835100|gb|AAP05734.1| recA protein [Chlamydophila caviae GPIC]
          Length = 350

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 184/326 (56%), Positives = 255/326 (78%), Gaps = 2/326 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN+ D+ KALEAA++ I++ +G G+IM LG   +  E I  + +G+L LD+ALGIGG PK
Sbjct: 1   MNVPDRKKALEAAIAYIEKQFGAGSIMSLGKHSATHE-ISTIKTGALSLDLALGIGGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEI+GPESSGKTTLA H +A +QK GG  A++DAEHALD  YA  +G ++ +L+ISQ
Sbjct: 60  GRIVEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPGYASLIGANINDLMISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GE AL I ++L RSGAVD+IVIDSVAAL P++E+EGD+G+   G+QAR+MSQALRKL
Sbjct: 120 PDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGDIGDVHVGLQARMMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI- 245
           T++++RS+   +FINQ+R KIGV FG+PETTTGG ALKFYSS+R+DIRR+G+IK  +S  
Sbjct: 180 TATLARSQTCAIFINQIREKIGVSFGNPETTTGGRALKFYSSIRMDIRRIGAIKGNESFD 239

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+ +VKV KNK+A PF+  EFDI++ EGIS  G ++DL V+ +IV+K G+WF+++ ++
Sbjct: 240 LGNRIKVKVAKNKLAPPFRTAEFDILFNEGISSAGCILDLAVEHNIVEKKGSWFNYQDRK 299

Query: 306 LGQGRENSKIFLRENIEIAENIESLL 331
           LGQGRE  +  L++N ++ + +E  +
Sbjct: 300 LGQGREAVREELKKNKKLFDELEKRI 325


>gi|307718788|ref|YP_003874320.1| DNA integration/recombination/invertion protein [Spirochaeta
           thermophila DSM 6192]
 gi|306532513|gb|ADN02047.1| DNA integration/recombination/invertion protein [Spirochaeta
           thermophila DSM 6192]
          Length = 375

 Score =  334 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 195/326 (59%), Positives = 260/326 (79%), Gaps = 2/326 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALEAA  QI++ +GKGA+M+LGS+  + EG++V+ SGS+ LD ALG+GG+PKGRI+
Sbjct: 13  EKLKALEAAQLQIEKQFGKGALMRLGSRSHV-EGLDVIPSGSILLDYALGVGGYPKGRII 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA++QK GG  AFVDAEHALD  YA+ LGV++  L +SQP +G
Sbjct: 72  EIYGPESSGKTTIALHAIAEAQKRGGIAAFVDAEHALDPTYAKNLGVNIDELWVSQPSSG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ALEIT+ LVRSGA+DIIV+DSVAALTP+AEI+GDMG++  G+QARLMSQALRKLT ++
Sbjct: 132 EEALEITESLVRSGAIDIIVVDSVAALTPQAEIDGDMGDAHVGLQARLMSQALRKLTGAV 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-ITGNQ 249
           ++S   L+FINQ+RMKIGVMFG+PETTTGGNALKFY+++RLD+RR  +I +      G +
Sbjct: 192 AKSGTCLIFINQIRMKIGVMFGNPETTTGGNALKFYATIRLDVRRTETISEGADNAVGTK 251

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            RV+VVKNK+A PFK+VE ++ +G+G+S    L+D  V+  ++ KSG+W+S   +R+GQG
Sbjct: 252 VRVRVVKNKVAPPFKKVELEMEFGKGVSSIASLLDAAVEHGLIQKSGSWYSIGDERIGQG 311

Query: 310 RENSKIFLRENIEIAENIESLLRQNA 335
           RE  K +L E+ E A  IE  LR+  
Sbjct: 312 RETIKQYLVEHPEEASRIEEELRKKL 337


>gi|291295133|ref|YP_003506531.1| recA protein [Meiothermus ruber DSM 1279]
 gi|281191413|gb|ADA57118.1| recombinase A [Meiothermus ruber]
 gi|290470092|gb|ADD27511.1| recA protein [Meiothermus ruber DSM 1279]
          Length = 349

 Score =  334 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 188/347 (54%), Positives = 253/347 (72%), Gaps = 3/347 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KALE AL  I++ +GKGA+M+LG      + ++V+ +GSLGLD+ALGIGG PKGRI+
Sbjct: 4   DKQKALEGALKSIEKQFGKGAVMRLGEAPR--QQVDVIPTGSLGLDMALGIGGIPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPES GKTTLAL  IAQ+Q+ GG  AFVDAEHALD IYA+ LGV++ +LL+SQPDTG
Sbjct: 62  EIYGPESGGKTTLALSIIAQAQQAGGVAAFVDAEHALDPIYAKSLGVNIDDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI ++L RSGA+D+IVIDSVAAL P+AEIEG MG++  G+QARLMSQALRKLT+++
Sbjct: 122 EQALEIVELLTRSGAIDVIVIDSVAALVPQAEIEGQMGDAFVGIQARLMSQALRKLTAAL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS-IKDKDSITGNQ 249
           S+S    +FINQ+R K+G M+G+PETT GG ALKFY+SVRLD+R+ G  IK  +   GN+
Sbjct: 182 SKSNTAAIFINQIREKVGQMYGNPETTPGGRALKFYASVRLDVRKQGQPIKVGNDAVGNR 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            RVKV KNK+A PF++ E ++ +G+GI    +L+ + +   ++DKSG+W S+   RLGQG
Sbjct: 242 VRVKVTKNKLAPPFREHEIELYFGKGIDPLADLVTVAIATEVIDKSGSWLSYGDTRLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           +E +  FLR    + + I   +   AG ++          +   A +
Sbjct: 302 KEKAAEFLRGEPRLVQEIREKVLAQAGKLSVLAPSGEDEESSAVAAE 348


>gi|254443443|ref|ZP_05056919.1| protein RecA [Verrucomicrobiae bacterium DG1235]
 gi|198257751|gb|EDY82059.1| protein RecA [Verrucomicrobiae bacterium DG1235]
          Length = 353

 Score =  334 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 189/346 (54%), Positives = 262/346 (75%), Gaps = 6/346 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +  D+ K +E A+S I + +G+G+IM+LGS   +   ++V+S+GS+ +D+ALG+GG P+G
Sbjct: 11  SSDDREKNVELAISAITKQFGEGSIMRLGSGSKL--NVDVISTGSISIDLALGVGGLPRG 68

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI EIYGPESSGKTT+ L  IA++Q+ GG  AF+D EHALD  YARKLGV++ +LL+SQP
Sbjct: 69  RICEIYGPESSGKTTMCLSLIAEAQRKGGLAAFIDVEHALDPKYARKLGVNVDDLLVSQP 128

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D+GE AL IT+ L+RS A+D+IVIDSVAAL  ++E++G MG++  G QARLMSQA+R+LT
Sbjct: 129 DSGEDALNITETLIRSNAIDVIVIDSVAALISKSELDGQMGDATVGSQARLMSQAMRRLT 188

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT- 246
           + +S++KCI +F NQ+R KIGVMFGSPETT GG ALKF+SSVR+DIRR+G IKD   +  
Sbjct: 189 AIVSKTKCICLFTNQIREKIGVMFGSPETTPGGRALKFFSSVRMDIRRIGQIKDNSGVVK 248

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TR+K+VKNK+A PF + EFDIMY EGIS  G ++DLG++  +++K GAW S+KG  +
Sbjct: 249 GNRTRIKMVKNKVAPPFTEAEFDIMYNEGISRTGSIVDLGIEHKVLEKKGAWISYKGDLI 308

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GQGRE +K  L EN EI E I   + ++   V   LL++  +   +
Sbjct: 309 GQGREAAKAHLSENPEIFEEISVKILES---VNPELLEKKKLEAAE 351


>gi|315185609|gb|EFU19377.1| RecA protein [Spirochaeta thermophila DSM 6578]
          Length = 375

 Score =  334 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 195/326 (59%), Positives = 260/326 (79%), Gaps = 2/326 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALEAA  QI++ +GKGA+M+LGS+  + EG++V+ SGS+ LD ALG+GG+PKGRI+
Sbjct: 13  EKLKALEAAQLQIEKQFGKGALMRLGSRSHV-EGLDVIPSGSILLDYALGVGGYPKGRII 71

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA++QK GG  AFVDAEHALD  YA+ LGV++  L +SQP +G
Sbjct: 72  EIYGPESSGKTTIALHAIAEAQKRGGIAAFVDAEHALDPTYAKNLGVNIDELWVSQPSSG 131

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ALEIT+ LVRSGA+DIIV+DSVAALTP+AEI+GDMG++  G+QARLMSQALRKLT ++
Sbjct: 132 EEALEITESLVRSGAIDIIVVDSVAALTPQAEIDGDMGDAHVGLQARLMSQALRKLTGAV 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-ITGNQ 249
           ++S   L+FINQ+RMKIGVMFG+PETTTGGNALKFY+++RLD+RR  +I +      G +
Sbjct: 192 AKSGTCLIFINQIRMKIGVMFGNPETTTGGNALKFYATIRLDVRRTETISEGADNAVGTK 251

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            RV+VVKNK+A PFK+VE ++ +G+G+S    L+D  V+  ++ KSG+W+S   +R+GQG
Sbjct: 252 VRVRVVKNKVAPPFKKVELEMEFGKGVSSIASLLDAAVEHGLIQKSGSWYSIGDERIGQG 311

Query: 310 RENSKIFLRENIEIAENIESLLRQNA 335
           RE  K +L E+ E A  IE  LR+  
Sbjct: 312 RETIKQYLVEHPEEASRIEEELRKKL 337


>gi|166079845|gb|ABY81644.1| recombinase A [Staphylococcus saccharolyticus]
          Length = 320

 Score =  334 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 191/314 (60%), Positives = 245/314 (78%), Gaps = 2/314 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKGA+M+LG               S+ +D ALG+GG+PKGRI+EIYGPESSGKTT+
Sbjct: 1   EKSFGKGAVMKLGDNKGRKVSSTSSG--SVTVDNALGVGGYPKGRIIEIYGPESSGKTTV 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALH IA+ QK GG  AF+DAEHALD +YA+ LGVD+ NL +SQPD GEQ LEI +  VRS
Sbjct: 59  ALHAIAEVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +IS+S    +FINQ+
Sbjct: 119 GAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAISKSNTTAIFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T++KVVKNK+A PF
Sbjct: 179 REKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRTKIKVVKNKVAPPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           +  E DIMYG+GIS  GELIDLGV+  I+DKSGAW+S+  +R+GQG+EN K +L+EN +I
Sbjct: 239 RVAEVDIMYGQGISKEGELIDLGVENDIIDKSGAWYSYNEERMGQGKENVKNYLKENPQI 298

Query: 324 AENIESLLRQNAGL 337
            E I+  LR+  G+
Sbjct: 299 KEEIDRKLREKLGI 312


>gi|110597837|ref|ZP_01386120.1| recA protein [Chlorobium ferrooxidans DSM 13031]
 gi|110340562|gb|EAT59045.1| recA protein [Chlorobium ferrooxidans DSM 13031]
          Length = 353

 Score =  334 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 199/335 (59%), Positives = 263/335 (78%), Gaps = 1/335 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K K L  A+  +++ +GKGAIM+LG   ++ + +  +S+GS+ LD ALG+GG P+GR+ E
Sbjct: 18  KLKQLNLAVDALEKQFGKGAIMRLGDSSAVMQ-VLSISTGSMTLDFALGVGGLPRGRVTE 76

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH IA++QK GG  A VDAEHA D  YAR+LGVD+ ++LISQP++GE
Sbjct: 77  IYGPESSGKTTLALHVIAEAQKEGGIAALVDAEHAFDPSYARRLGVDINSMLISQPESGE 136

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL I + LVRSGAVD++V+DSVAAL P+AE+EG+MG+S+ G+QARLMSQALRKLT +IS
Sbjct: 137 QALSIVETLVRSGAVDVVVVDSVAALVPQAELEGEMGDSVVGLQARLMSQALRKLTGAIS 196

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S C+ +FINQ+R KIGVM+GSPETTTGG ALKFYSS+RLDIRR+  +KD D I GN+T+
Sbjct: 197 KSSCVCIFINQLRDKIGVMYGSPETTTGGKALKFYSSIRLDIRRIAQLKDGDEIIGNRTK 256

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF+  EFDI+YGEGIS  GELIDL V+  +V KSG+WFS+   +LGQGRE
Sbjct: 257 VKVVKNKVAPPFRTAEFDILYGEGISVIGELIDLAVEFGVVKKSGSWFSYGPDKLGQGRE 316

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
             K  LRE+  + + I + +++   + A+ +  + 
Sbjct: 317 TVKKALREDPVLFKKIHAQVKELMKVPAEIVKDKE 351


>gi|162769937|emb|CAP58284.1| DNA recombinase [Burkholderia contaminans]
          Length = 304

 Score =  333 bits (854), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 212/307 (69%), Positives = 263/307 (85%), Gaps = 3/307 (0%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHAL
Sbjct: 1   VSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+M
Sbjct: 61  DVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYS
Sbjct: 121 GDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYS 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV
Sbjct: 181 SVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGV 240

Query: 288 KASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           +A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ +R++ G+V    + + A
Sbjct: 241 QAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIRESLGVVT---MPDGA 297

Query: 348 INTKDDA 354
              + +A
Sbjct: 298 AQDEAEA 304


>gi|15618671|ref|NP_224957.1| recombinase A [Chlamydophila pneumoniae CWL029]
 gi|15836295|ref|NP_300819.1| recombinase A [Chlamydophila pneumoniae J138]
 gi|16752279|ref|NP_445647.1| recombinase A [Chlamydophila pneumoniae AR39]
 gi|6225923|sp|Q9Z7E4|RECA_CHLPN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|4377070|gb|AAD18900.1| RecA recombination protein [Chlamydophila pneumoniae CWL029]
 gi|7190022|gb|AAF38877.1| recA protein [Chlamydophila pneumoniae AR39]
 gi|8979135|dbj|BAA98970.1| RecA recombination protein [Chlamydophila pneumoniae J138]
 gi|269302551|gb|ACZ32651.1| protein RecA [Chlamydophila pneumoniae LPCoLN]
          Length = 353

 Score =  333 bits (854), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 190/355 (53%), Positives = 261/355 (73%), Gaps = 4/355 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN+ D+ KALEAA++ I++ +G G+IM LG   +  E I  + +G+L LD+ALGI G PK
Sbjct: 1   MNLPDRKKALEAAVAYIEKQFGAGSIMSLGRHSATHE-ISTIKTGALSLDLALGIHGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++EI+GPESSGKTTLA H +A +QK GG  A++DAEHALD  YA  +GV++ +L+ISQ
Sbjct: 60  GRVIEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPSYASLIGVNIDDLMISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GE AL I ++L RSGAVD+IVIDSVAAL P++E+EGD+G+   G+QAR+MSQALRKL
Sbjct: 120 PDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGDIGDVHVGLQARMMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI- 245
           T+++SRS+   VFINQ+R KIGV FG+PETTTGG ALKFYSS+RLDIRR+GSIK  D+  
Sbjct: 180 TATLSRSQTCAVFINQIREKIGVSFGNPETTTGGRALKFYSSIRLDIRRIGSIKGSDNSD 239

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+ +VKV KNK+A PF+  EFDI++ EGIS  G ++DL V+ +I++K G+WF+++ ++
Sbjct: 240 IGNRIKVKVAKNKLAPPFRIAEFDILFNEGISSAGCILDLAVEYNIIEKKGSWFNYQEKK 299

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           LGQGRE  +  L+ N ++ E IE  +     + A+      A  T  +      +
Sbjct: 300 LGQGREFVREELKRNRKLFEEIEKRIYDV--IAANKTPSVHANETPQEVPAQTVE 352


>gi|166079834|gb|ABY81639.1| recombinase A [Staphylococcus cohnii]
          Length = 310

 Score =  333 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 190/312 (60%), Positives = 246/312 (78%), Gaps = 2/312 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKGA+M+LG   +           S+ LD ALG+GG+PKGRI+EIYGPESSGKTT+
Sbjct: 1   EKSFGKGAVMKLGDNEARKVSSVSSG--SVTLDNALGVGGYPKGRIIEIYGPESSGKTTV 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALH IA+ QK GG  AF+DAEHALD +YA  LG D++NL +SQPD GEQ LEI +  VRS
Sbjct: 59  ALHAIAEVQKNGGIAAFIDAEHALDPVYAEALGDDIQNLYLSQPDHGEQGLEIAEAFVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVDI+V+DSVAALTP+AEIEG+MG++  G+QARLMSQALRKL+ +IS+S    VFINQ+
Sbjct: 119 GAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAISKSNTTAVFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K    I GN+T++KVVKNK+A PF
Sbjct: 179 REKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRTKIKVVKNKVAPPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
           +  E D+MYG+GIS  GELIDLGV+  IV+KSGAW+S+ G+R+GQG+EN K++L+EN ++
Sbjct: 239 RVAEVDMMYGKGISKEGELIDLGVENEIVNKSGAWYSYNGERMGQGKENVKLYLKENPKV 298

Query: 324 AENIESLLRQNA 335
            + I+  LR+N 
Sbjct: 299 NQEIDRKLRENL 310


>gi|194337546|ref|YP_002019340.1| recA protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194310023|gb|ACF44723.1| recA protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 348

 Score =  333 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 197/322 (61%), Positives = 257/322 (79%), Gaps = 1/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K K L  A+  +++ +GKGAIM+LG   +  + ++ +S+GS+ LD ALG+GG P+GR+ E
Sbjct: 17  KLKQLNLAVEALEKQFGKGAIMRLGDDSAGMK-VQSISTGSMTLDFALGVGGLPRGRVTE 75

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH IA++QK GG  A VDAEHA D  YARKLGVD+  LLISQP++GE
Sbjct: 76  IYGPESSGKTTLALHVIAEAQKEGGIAAIVDAEHAFDPTYARKLGVDINALLISQPESGE 135

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL I + LVRS A+D++V+DSVAAL P+AE+EG+MG+S+ G+QARLMSQALRKLT +IS
Sbjct: 136 QALSIVETLVRSNAIDVVVVDSVAALVPQAELEGEMGDSVMGLQARLMSQALRKLTGAIS 195

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S C+ +FINQ+R KIGV++G+PETTTGG ALKFYSSVRLDIR++  IKD + ITGN+TR
Sbjct: 196 KSSCVCIFINQLRDKIGVVYGNPETTTGGKALKFYSSVRLDIRKIAQIKDGEEITGNRTR 255

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF+  EFDI+YGEGIS  GELIDL V+  +V K+G+WFS+   +LGQGRE
Sbjct: 256 VKVVKNKVAPPFRTAEFDILYGEGISAMGELIDLAVEFGVVKKAGSWFSYGTDKLGQGRE 315

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
             K  LRE+  +   I++ +++
Sbjct: 316 TVKKALREDSALYSKIQAQVKE 337


>gi|296111784|ref|YP_003622166.1| recombinase A [Leuconostoc kimchii IMSNU 11154]
 gi|295833316|gb|ADG41197.1| recombinase A [Leuconostoc kimchii IMSNU 11154]
          Length = 382

 Score =  332 bits (852), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 197/354 (55%), Positives = 260/354 (73%), Gaps = 6/354 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL +I++ +GKG++M LG        +E   SGS+ LD+ALG+GG+PKGRI+E
Sbjct: 19  RKAALDEALKKIEKNFGKGSVMVLGDNA--LTQVETYPSGSVKLDVALGVGGYPKGRIIE 76

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  YA  LGV    LL+SQPDTGE
Sbjct: 77  VYGPESSGKTTIALHAVAEVQKAGGTAAYIDAENALDVKYAEALGVKKDELLLSQPDTGE 136

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q LEI D LV+SGAVD+IV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL  +++
Sbjct: 137 QGLEIADALVQSGAVDMIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGTLN 196

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           R+  I +FINQ+R KIGVMFG+PETT GG ALKFYS++RL++RR   IKD   +TGN T+
Sbjct: 197 RTGTIAIFINQIREKIGVMFGNPETTPGGRALKFYSTIRLEVRRSTQIKDGTDVTGNLTK 256

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PFK  E DIMYG+GIS  GE++DLG +  I+ K+GA++ +   ++GQGRE
Sbjct: 257 VKVVKNKVAPPFKVAEVDIMYGKGISQTGEILDLGAEQEIIRKAGAFYYYNDIKVGQGRE 316

Query: 312 NSKIFLR--ENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            +K FL   EN E+ + I + +R   G+          + + D +D D TD +E
Sbjct: 317 KAKEFLDAPENAEMRQEIYTKVRDAFGIGDGD--SSEMLESDDVSDLDQTDTLE 368


>gi|298529110|ref|ZP_07016513.1| recA protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510546|gb|EFI34449.1| recA protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 354

 Score =  332 bits (852), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 208/356 (58%), Positives = 273/356 (76%), Gaps = 5/356 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M  + +     + +AL+ A++ I+R YG+G++M+L  +    + I  + +GS+GLD+ALG
Sbjct: 1   MAKKTQSAEDVRKEALQTAITTIERKYGQGSVMRLSDEA--HQAIPSIPTGSIGLDLALG 58

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG P+GR+ EIYGPESSGKTTLALH IA++QK GG  AF+DAEHALD  YA++LGV  +
Sbjct: 59  IGGIPRGRVSEIYGPESSGKTTLALHVIAEAQKKGGAAAFIDAEHALDVNYAKRLGVKTE 118

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPD GEQALEI D+LVRSG +D+IV+DSVAAL P+AE+EG MGES  G QARLMS
Sbjct: 119 ELLVSQPDYGEQALEIADLLVRSGGLDVIVVDSVAALIPQAELEGSMGESQVGGQARLMS 178

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSI 239
            A+RKLT +I RSK  LVFINQ+RMKIG M +GSPETT+GGNALKFY+SVRLDIR++ ++
Sbjct: 179 HAMRKLTGTIHRSKTSLVFINQIRMKIGSMGYGSPETTSGGNALKFYASVRLDIRKIQTL 238

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           KDKD + GN+ +VK VKNK+A PF++ +FDI+YG+GIS  GEL+D+GV+  +VDKSGAWF
Sbjct: 239 KDKDEVVGNRVKVKTVKNKVAPPFRETQFDILYGQGISRAGELLDMGVEHGVVDKSGAWF 298

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           +F  +RLGQGREN + FL++N EI +NIE+ L    G+V     +E      D  D
Sbjct: 299 AFGSERLGQGRENVRSFLQDNDEIRKNIENQLLTQLGVV--QPEEEAQQGQSDSQD 352


>gi|326693641|ref|ZP_08230646.1| recombinase A [Leuconostoc argentinum KCTC 3773]
          Length = 381

 Score =  332 bits (852), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 197/347 (56%), Positives = 256/347 (73%), Gaps = 4/347 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL +I++ +GKG+IM LG        +E   SGS+ LD+ALG+GG+PKGRI+E
Sbjct: 19  RKAALDEALKRIEKNFGKGSIMLLGDNA--LTQVETYPSGSVKLDVALGVGGYPKGRIIE 76

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH +A+ QK GGT A++DAE+ALD  YA  LGV    LL+SQPDTGE
Sbjct: 77  IYGPESSGKTTLALHAVAEVQKAGGTAAYIDAENALDVKYAEALGVKKDELLLSQPDTGE 136

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q LEI D LV+SGAVDIIV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL  +++
Sbjct: 137 QGLEIADALVQSGAVDIIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGTLN 196

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           R+  + +FINQ+R KIGVMFG+PETT GG ALKFYS++RL++RR   IKD   +TGN T+
Sbjct: 197 RTGTVAIFINQIREKIGVMFGNPETTPGGRALKFYSTIRLEVRRSTQIKDGTDVTGNLTK 256

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PFK  E DIMYG+GIS  GE++DLG +  I+ K+GA++ +   ++GQGRE
Sbjct: 257 VKVVKNKVAPPFKVAEVDIMYGKGISQTGEILDLGAEQEIIRKAGAFYYYGDVKVGQGRE 316

Query: 312 NSKIFLR--ENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
            +K FL   EN  + + I + +R   G+    LL E   +   +A +
Sbjct: 317 KAKEFLDAPENAAMRQEIYAKVRNAFGIGDGELLVEETDDEVIEAPE 363


>gi|227204159|dbj|BAH56931.1| AT1G79050 [Arabidopsis thaliana]
          Length = 448

 Score =  332 bits (851), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 180/325 (55%), Positives = 239/325 (73%), Gaps = 5/325 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +D+ KALEAA++ I   +GKG++ +LGS G     +E  SSG L LD+ALG GG PKGR+
Sbjct: 81  LDRQKALEAAMNDINSSFGKGSVTRLGSAGGAL--VETFSSGILTLDLALG-GGLPKGRV 137

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH IA+ QK GG    VDAEHA D  Y++ LGVD++NL++ QPD 
Sbjct: 138 VEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDN 197

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GE ALE  D + RSGAVD+I +DSV+ALTPRAEIEG++G    G+QARLMSQALRK++ +
Sbjct: 198 GEMALETADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGN 257

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK--DKDSITG 247
            S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++SVRL+IR  G IK    D   G
Sbjct: 258 ASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSAGKIKSSKGDEDIG 317

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
            + RV+V K+K++ P+KQ EF+IM+GEG+S  G ++D      +V K G+W+S++ QRLG
Sbjct: 318 LRARVRVQKSKVSRPYKQAEFEIMFGEGVSKLGCVLDCAEIMEVVVKKGSWYSYEDQRLG 377

Query: 308 QGRENSKIFLRENIEIAENIESLLR 332
           QGRE +   LREN  + + IE  +R
Sbjct: 378 QGREKALQHLRENPALQDEIEKKVR 402


>gi|33242121|ref|NP_877062.1| recombinase A [Chlamydophila pneumoniae TW-183]
 gi|33236631|gb|AAP98719.1| RecA [Chlamydophila pneumoniae TW-183]
          Length = 353

 Score =  332 bits (851), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 189/355 (53%), Positives = 261/355 (73%), Gaps = 4/355 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN+ D+ KALEAA++ I++ +G G+IM LG   +  E I  + +G+L LD+ALGI G PK
Sbjct: 1   MNLPDRKKALEAAVAYIEKQFGAGSIMSLGRHSATHE-ISTIKTGALSLDLALGIHGVPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++EI+GPESSGKTTLA H +A +QK GG  A++DAEHALD  YA  +GV++ +L+ISQ
Sbjct: 60  GRVIEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPSYASLIGVNIDDLMISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GE AL I ++L RSGAVD+IVIDSVAAL P++E+EGD+G+   G+QAR+MSQALRKL
Sbjct: 120 PDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGDIGDVHVGLQARMMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI- 245
           T+++SRS+   VFINQ+R KIGV FG+PETTTGG ALKFYSS+RLDIRR+GSIK  D+  
Sbjct: 180 TATLSRSQTCAVFINQIREKIGVSFGNPETTTGGRALKFYSSIRLDIRRIGSIKGSDNSD 239

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+ +VKV KNK+A PF+  EFDI++ EGIS  G ++DL V+ +I++K G+WF+++ ++
Sbjct: 240 IGNRIKVKVAKNKLAPPFRIAEFDILFNEGISSAGCILDLAVEYNIIEKKGSWFNYQEKK 299

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           LGQGRE  +  L+ N ++ + IE  +     + A+      A  T  +      +
Sbjct: 300 LGQGREFVREELKRNRKLFKEIEKRIYDV--IAANKTPSVHANETPQEVPAQTVE 352


>gi|166841|gb|AAA32855.1| replicase [Arabidopsis thaliana]
          Length = 438

 Score =  332 bits (851), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 180/325 (55%), Positives = 239/325 (73%), Gaps = 5/325 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +D+ KALEAA++ I   +GKG++ +LGS G     +E  SSG L LD+ALG GG PKGR+
Sbjct: 80  LDRQKALEAAMNDINSSFGKGSVTRLGSAGGAL--VETFSSGILTLDLALG-GGLPKGRV 136

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH IA+ QK GG    VDAEHA D  Y++ LGVD++NL++ QPD 
Sbjct: 137 VEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDN 196

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GE ALE  D + RSGAVD+I +DSV+ALTPRAEIEG++G    G+QARLMSQALRK++ +
Sbjct: 197 GEMALETADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGN 256

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK--DKDSITG 247
            S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++SVRL+IR  G IK    D   G
Sbjct: 257 ASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSAGKIKSSKGDEDIG 316

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
            + RV+V K+K++ P+KQ EF+IM+GEG+S  G ++D      +V K G+W+S++ QRLG
Sbjct: 317 LRARVRVQKSKVSRPYKQAEFEIMFGEGVSKLGCVLDCAEIMEVVVKKGSWYSYEDQRLG 376

Query: 308 QGRENSKIFLRENIEIAENIESLLR 332
           QGRE +   LREN  + + IE  +R
Sbjct: 377 QGREKALQHLRENPALQDEIEKKVR 401


>gi|282882064|ref|ZP_06290705.1| RecA protein [Peptoniphilus lacrimalis 315-B]
 gi|281298094|gb|EFA90549.1| RecA protein [Peptoniphilus lacrimalis 315-B]
          Length = 343

 Score =  332 bits (851), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 197/339 (58%), Positives = 265/339 (78%), Gaps = 2/339 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           + ++K +AL+  L+ I++ YG+G+IM+LG    +   I+ + +G+L LDIALGIGG PKG
Sbjct: 3   DNLEKKEALDKVLATIEKQYGEGSIMKLGQDAKL--NIDSIPTGALALDIALGIGGIPKG 60

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EIYGPESSGKTT+ALH +A+SQK GG  AF+DAEHALD  YA+KLGVD++NL+ISQP
Sbjct: 61  RIIEIYGPESSGKTTIALHIVAESQKLGGNAAFIDAEHALDPGYAKKLGVDVENLIISQP 120

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEIT+ LVRS AVDI+VIDSVAAL P+ EI+G+MG++  G+QARLMSQALRKLT
Sbjct: 121 DTGEQALEITEALVRSNAVDIVVIDSVAALVPKTEIDGEMGQATIGLQARLMSQALRKLT 180

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            +I++SK  ++FINQ+R K+GV++G+PETTTGG ALKFYS++RLD+RR+  IK  DS  G
Sbjct: 181 GAINKSKAAVIFINQLREKVGVIYGNPETTTGGRALKFYSTIRLDVRRIEIIKKGDSPIG 240

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           ++ RVKVVKNK+A PFK+ E DIMYG GIS  G ++D+     IV K+G+W+S+  ++LG
Sbjct: 241 SRVRVKVVKNKVAPPFKEAEVDIMYGTGISKTGNILDVAADMGIVKKAGSWYSYNDEKLG 300

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           QGRE SK FL  N+ + + IE+ +R      +D +  + 
Sbjct: 301 QGREKSKDFLDSNLNLLKEIENKVRDTLKDDSDDISVKE 339


>gi|218962127|ref|YP_001741902.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730784|emb|CAO81696.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Candidatus Cloacamonas
           acidaminovorans]
          Length = 351

 Score =  332 bits (851), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 188/354 (53%), Positives = 255/354 (72%), Gaps = 8/354 (2%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   +K  AL+ A+SQ+++ YG G +M+LG +    + ++V+ +G+L LDIALGIGG PK
Sbjct: 1   MLDKNKDAALKTAISQLEKKYGVGTLMRLGDKP--HQVVDVIPTGALNLDIALGIGGIPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI EIYG E+SGKTTLALH  A+ QK GG  AF+D EHALD IYA+ LGV   +LL+SQ
Sbjct: 59  GRITEIYGAEASGKTTLALHIAAECQKQGGIVAFIDVEHALDPIYAKHLGVITDDLLLSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEIT+ LVRS AVD+I+IDSVAAL P+ EIEG+MG+S  G+QARLMSQALRKL
Sbjct: 119 PDGGEQALEITETLVRSSAVDLIIIDSVAALVPKQEIEGEMGDSHVGLQARLMSQALRKL 178

Query: 187 TSSISRSKCILVFINQMRMKIGV-MFGSPETTTGGNALKFYSSVRLDIRRVGSIKD---K 242
           T+ +S+S   ++FINQ RMKIG   + +PETTTGG ALKFY+SVRL++R    IKD   +
Sbjct: 179 TAIVSKSNTAVIFINQTRMKIGAGPYMNPETTTGGVALKFYASVRLEVRHGAQIKDVGSE 238

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
             + G +T+VKVVKNK A PFK VEF I++G+GIS    ++++ V+  I+ KSG+WFS+ 
Sbjct: 239 SQVIGTRTKVKVVKNKFAPPFKTVEFPIIFGQGISKLDIILEMAVQHDIIKKSGSWFSYN 298

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
             +LGQG + +K++L EN  + + IE+ LR+   +  +        N  +D ++
Sbjct: 299 DLKLGQGADKTKLYLTENQPLLQEIEAKLREK--INPEEFNLSAEENVPEDNEE 350


>gi|157326931|gb|ABV44578.1| RecA [Burkholderia multivorans]
          Length = 293

 Score =  332 bits (851), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 209/294 (71%), Positives = 258/294 (87%), Gaps = 1/294 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LV
Sbjct: 60  TLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FIN
Sbjct: 120 RSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ 
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+ + G+++GQGR+N++ 
Sbjct: 240 PFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYGYNGEKIGQGRDNARE 293


>gi|20807821|ref|NP_622992.1| recombinase A [Thermoanaerobacter tengcongensis MB4]
 gi|20516381|gb|AAM24596.1| RecA/RadA recombinase [Thermoanaerobacter tengcongensis MB4]
          Length = 307

 Score =  332 bits (850), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 199/300 (66%), Positives = 252/300 (84%), Gaps = 2/300 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           +++K KALE A+SQI+R +GKGAIM+LG    +   +EV+ +GSL LDIALG+GG P+GR
Sbjct: 2   MIEKQKALEMAISQIERQFGKGAIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EI+GPESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGV++ +LL++QPD
Sbjct: 60  IIEIFGPESSGKTTLALHMIAEAQKIGGTGAFIDAEHALDPVYAKNLGVNIDDLLVAQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL  
Sbjct: 120 TGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLAG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
             S+SK I+VFINQ+R K+GVMFG+PETT GG ALKFY+++RLD+R+V +IK  + I G+
Sbjct: 180 VTSKSKSIVVFINQLREKVGVMFGNPETTPGGRALKFYATIRLDVRKVDNIKQGNEIVGS 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++DLG    I++KSG+W+S+K  +LGQ
Sbjct: 240 RTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILDLGTALDIIEKSGSWYSYKDIKLGQ 299


>gi|67926019|ref|ZP_00519282.1| RecA bacterial DNA recombination protein [Crocosphaera watsonii WH
           8501]
 gi|67852132|gb|EAM47628.1| RecA bacterial DNA recombination protein [Crocosphaera watsonii WH
           8501]
          Length = 358

 Score =  332 bits (850), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 192/333 (57%), Positives = 250/333 (75%), Gaps = 4/333 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N  DK KAL   L+QI+R +GKG+IM+LG    +   +E +S+G+L LD+ALG GG P G
Sbjct: 6   NNPDKEKALGLVLNQIERNFGKGSIMRLGDAARM--KVETISTGALTLDLALG-GGLPMG 62

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTLALH IA+ QK GG  AFVDAEHALD  Y+  LGVD+ NLL++QP
Sbjct: 63  RIVEIYGPESSGKTTLALHAIAEVQKAGGVAAFVDAEHALDPTYSGALGVDIDNLLVAQP 122

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGE ALEI D LVRS AVD++V+DSVAAL PRAEIEG+MG++  G+QARLMS+ALRK+ 
Sbjct: 123 DTGESALEIVDQLVRSAAVDVVVVDSVAALVPRAEIEGEMGDTQVGLQARLMSKALRKIA 182

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-IT 246
            +I +S C+++F+NQ+R KIGV +GSPE TTGG ALKFY+SVRLDIRR+ ++K       
Sbjct: 183 GNIGKSGCVVIFLNQLRQKIGVTYGSPEVTTGGTALKFYASVRLDIRRIQTLKKGSEGEY 242

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G + +VKV KNK+A PF+  EFDI++G GIS  G ++DL  +  +V + GAW+S+ G  +
Sbjct: 243 GIRAKVKVAKNKVAPPFRISEFDIIFGSGISQMGCMLDLAEQCDVVVRKGAWYSYNGDNI 302

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
            QGR+N+  +L EN +IAE IE  +R+   L +
Sbjct: 303 SQGRDNAVKYLEENPKIAETIEQQVREKLELGS 335


>gi|328948662|ref|YP_004365999.1| protein recA [Treponema succinifaciens DSM 2489]
 gi|328448986|gb|AEB14702.1| Protein recA [Treponema succinifaciens DSM 2489]
          Length = 422

 Score =  332 bits (850), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 199/353 (56%), Positives = 272/353 (77%), Gaps = 3/353 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           + +  + + +K KALEAA  QI++ +G G++M+LG++      I+VV SGS+ LD ALGI
Sbjct: 5   EEKFPVEMSEKLKALEAARLQIEKQFGTGSLMKLGTKTDTA-SIDVVPSGSILLDEALGI 63

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+P+GR++E+YGPESSGKTTLALH +A++QK GG  AF+DAEHALD +YA+ LGV++  
Sbjct: 64  GGYPRGRVIEMYGPESSGKTTLALHAVAEAQKLGGIAAFIDAEHALDPVYAKNLGVNIDE 123

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L +SQPDTGEQALEI + LVRSGAVDIIV+DSVAALTP+ EIEG+MG+S+ G+QARLMSQ
Sbjct: 124 LWVSQPDTGEQALEICENLVRSGAVDIIVVDSVAALTPQKEIEGEMGDSVMGLQARLMSQ 183

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI-- 239
           ALRKLT+ + +SKCI+VFINQ+RMKIGVMFG+PETTTGGNALKFYSS+RL+IRR+ SI  
Sbjct: 184 ALRKLTAIVGKSKCIVVFINQIRMKIGVMFGNPETTTGGNALKFYSSIRLEIRRIESIDG 243

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           K ++   GN+ RVK+VKNK+A PF++VE DI +G+GIS    ++D  VK  ++DK GAW+
Sbjct: 244 KGEEDAVGNRVRVKIVKNKVAPPFRKVELDIYFGKGISSAASILDSSVKHGLIDKRGAWY 303

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           +   +++GQG+EN+  ++  N      +E+ LR+          +E  + TK+
Sbjct: 304 TRGEEKVGQGKENAVAYIENNPAFKMELENTLREKIFPGQVLRTKEGEVVTKE 356


>gi|257468267|ref|ZP_05632363.1| recA protein [Fusobacterium ulcerans ATCC 49185]
          Length = 373

 Score =  332 bits (850), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 198/365 (54%), Positives = 266/365 (72%), Gaps = 7/365 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M  +K   +  K KAL+ A+ QI + +G G+IM+LG   S+   +EV+S+GSL L++ALG
Sbjct: 1   MAAKKNEEVS-KEKALDLAIKQISKEFGDGSIMKLGDNLSMH--VEVISTGSLNLNMALG 57

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG P+GR++E+YG ESSGKTT+ALH +A++QK GG  AF+DAEHALD +YA+ LGVD+ 
Sbjct: 58  VGGVPRGRVIEVYGAESSGKTTIALHIVAEAQKAGGIAAFIDAEHALDPVYAKALGVDVD 117

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LLISQPD GEQALEI DMLVRS AVDIIV+DSVAAL P+ EI+G+MG+   G+QARLMS
Sbjct: 118 ELLISQPDYGEQALEIADMLVRSNAVDIIVVDSVAALVPKVEIDGEMGDQQMGLQARLMS 177

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           +ALRKLT+S+++SK  +VFINQ+R KIG   FG   TTTGG ALKFYSSVRL+++R+GS+
Sbjct: 178 KALRKLTASLNKSKTTMVFINQIRDKIGGFGFGPQTTTTGGKALKFYSSVRLEVKRIGSV 237

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           K  D + GN+T VKV KNK+A PFK+  F IMYG GI+  GE++++ +   IV KSGAWF
Sbjct: 238 KQGDEVIGNETVVKVTKNKVAPPFKEASFQIMYGRGITRVGEIMEIALSNDIVAKSGAWF 297

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK-DDADKDD 358
           SF   RLGQG+EN K  L    E+ E IE  + +   +    L  +P+     +  + D+
Sbjct: 298 SFGDIRLGQGKENVKARLEAEPELFEQIEKKVLEI--IEKGELGNKPSKKKPTESTESDE 355

Query: 359 TDNVE 363
           +D ++
Sbjct: 356 SDGLD 360


>gi|18412241|ref|NP_565198.1| DNA repair protein recA [Arabidopsis thaliana]
 gi|2500098|sp|Q39199|RECAC_ARATH RecName: Full=DNA repair protein recA homolog 1, chloroplastic;
           AltName: Full=Recombinase A homolog 1; Flags: Precursor
 gi|289208|gb|AAA61781.1| chloroplast DNA repair protein precursor [Arabidopsis thaliana]
 gi|3152570|gb|AAC17051.1| Match to nuclear-encoded chloroplast DNA repair protein (E. coli
           recA homolog) gb|L15229 [Arabidopsis thaliana]
 gi|15292903|gb|AAK92822.1| putative replicase [Arabidopsis thaliana]
 gi|21281181|gb|AAM45008.1| putative replicase [Arabidopsis thaliana]
 gi|332198076|gb|AEE36197.1| DNA repair protein recA-like 1 [Arabidopsis thaliana]
          Length = 439

 Score =  332 bits (850), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 180/325 (55%), Positives = 239/325 (73%), Gaps = 5/325 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +D+ KALEAA++ I   +GKG++ +LGS G     +E  SSG L LD+ALG GG PKGR+
Sbjct: 81  LDRQKALEAAMNDINSSFGKGSVTRLGSAGGAL--VETFSSGILTLDLALG-GGLPKGRV 137

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH IA+ QK GG    VDAEHA D  Y++ LGVD++NL++ QPD 
Sbjct: 138 VEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDN 197

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GE ALE  D + RSGAVD+I +DSV+ALTPRAEIEG++G    G+QARLMSQALRK++ +
Sbjct: 198 GEMALETADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGN 257

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK--DKDSITG 247
            S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++SVRL+IR  G IK    D   G
Sbjct: 258 ASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSAGKIKSSKGDEDIG 317

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
            + RV+V K+K++ P+KQ EF+IM+GEG+S  G ++D      +V K G+W+S++ QRLG
Sbjct: 318 LRARVRVQKSKVSRPYKQAEFEIMFGEGVSKLGCVLDCAEIMEVVVKKGSWYSYEDQRLG 377

Query: 308 QGRENSKIFLRENIEIAENIESLLR 332
           QGRE +   LREN  + + IE  +R
Sbjct: 378 QGREKALQHLRENPALQDEIEKKVR 402


>gi|317062547|ref|ZP_07927032.1| recombinase A [Fusobacterium ulcerans ATCC 49185]
 gi|313688223|gb|EFS25058.1| recombinase A [Fusobacterium ulcerans ATCC 49185]
          Length = 376

 Score =  332 bits (850), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 198/365 (54%), Positives = 266/365 (72%), Gaps = 7/365 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M  +K   +  K KAL+ A+ QI + +G G+IM+LG   S+   +EV+S+GSL L++ALG
Sbjct: 4   MAAKKNEEVS-KEKALDLAIKQISKEFGDGSIMKLGDNLSMH--VEVISTGSLNLNMALG 60

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG P+GR++E+YG ESSGKTT+ALH +A++QK GG  AF+DAEHALD +YA+ LGVD+ 
Sbjct: 61  VGGVPRGRVIEVYGAESSGKTTIALHIVAEAQKAGGIAAFIDAEHALDPVYAKALGVDVD 120

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LLISQPD GEQALEI DMLVRS AVDIIV+DSVAAL P+ EI+G+MG+   G+QARLMS
Sbjct: 121 ELLISQPDYGEQALEIADMLVRSNAVDIIVVDSVAALVPKVEIDGEMGDQQMGLQARLMS 180

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           +ALRKLT+S+++SK  +VFINQ+R KIG   FG   TTTGG ALKFYSSVRL+++R+GS+
Sbjct: 181 KALRKLTASLNKSKTTMVFINQIRDKIGGFGFGPQTTTTGGKALKFYSSVRLEVKRIGSV 240

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           K  D + GN+T VKV KNK+A PFK+  F IMYG GI+  GE++++ +   IV KSGAWF
Sbjct: 241 KQGDEVIGNETVVKVTKNKVAPPFKEASFQIMYGRGITRVGEIMEIALSNDIVAKSGAWF 300

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK-DDADKDD 358
           SF   RLGQG+EN K  L    E+ E IE  + +   +    L  +P+     +  + D+
Sbjct: 301 SFGDIRLGQGKENVKARLEAEPELFEQIEKKVLEI--IEKGELGNKPSKKKPTESTESDE 358

Query: 359 TDNVE 363
           +D ++
Sbjct: 359 SDGLD 363


>gi|320449505|ref|YP_004201601.1| protein RecA [Thermus scotoductus SA-01]
 gi|320149674|gb|ADW21052.1| protein RecA [Thermus scotoductus SA-01]
          Length = 340

 Score =  331 bits (849), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 190/336 (56%), Positives = 259/336 (77%), Gaps = 3/336 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALE AL  I++ +GKGA+M+LG    +   ++V+ +GSLGLD+ALGIGG P+GR++
Sbjct: 4   NKRKALENALKTIEKEFGKGAVMRLGEMPKL--QVDVIPTGSLGLDLALGIGGIPRGRVI 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPES GKTTLAL  IAQ+QK GG  AFVDAEHALD +YA+KLGV +++LL+SQPDTG
Sbjct: 62  EIYGPESGGKTTLALTIIAQAQKQGGVAAFVDAEHALDPLYAQKLGVKVEDLLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI ++L RSGAVD+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRKLT+ +
Sbjct: 122 EQALEIVELLARSGAVDVIVVDSVAALVPKAEIEGEMGDQHVGLQARLMSQALRKLTAVL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS-IKDKDSITGNQ 249
           S+S    +FINQ+R K+GVM+G+PETT GG ALKFYSSVRLD+R+ G  IK  +   G +
Sbjct: 182 SKSNTAAIFINQVREKVGVMYGNPETTPGGRALKFYSSVRLDVRKSGQPIKVGNEAVGIK 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PF++ E +I +G G+    +L+++ V A++++K+G+WFS+   RLGQG
Sbjct: 242 VKVKVVKNKLAPPFREAELEIYFGRGLDPVMDLVNVAVAANVIEKAGSWFSYGEIRLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           +E +  +LRE  E+ E I + + + A  V  +  +E
Sbjct: 302 KEKAADYLRERPELLEEIRAKVLERAHEVVLAGSEE 337


>gi|151337023|gb|ABS00959.1| recombinase A protein [Thermus aquaticus]
          Length = 340

 Score =  331 bits (849), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 186/339 (54%), Positives = 254/339 (74%), Gaps = 3/339 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+LE AL  I++ +GKGA+M+LG    +   ++V+ +GSLGLD+ALGIGG P+GR+ 
Sbjct: 4   NKRKSLENALKTIEKEFGKGAVMRLGEMPKL--QVDVIPTGSLGLDLALGIGGIPRGRVT 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPES GKTTLAL  IAQ+QK GG  AFVDAEHALD +YA+KLGVD++ LL+SQPDTG
Sbjct: 62  EIFGPESGGKTTLALTIIAQAQKGGGVAAFVDAEHALDPLYAKKLGVDVQELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI ++L RSGAVD+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRKLT+ +
Sbjct: 122 EQALEIVELLARSGAVDVIVVDSVAALVPKAEIEGEMGDQHVGLQARLMSQALRKLTAVL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQ 249
            +S    +FINQ+R K+G M+ +PETT GG ALKFYSSVRLD+R+ G  IK  +   G +
Sbjct: 182 YKSNTAAIFINQIREKVGAMYTNPETTPGGRALKFYSSVRLDVRKSGPPIKAGNEAVGIK 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PF++ E +I +G G+    +L+++ V A +++K+G+WFS+   RLGQG
Sbjct: 242 VKVKVVKNKLAPPFREAELEIYFGRGLDPVMDLVNVAVAAGVIEKAGSWFSYGEHRLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348
           +E +  +LRE  E+ E I + + + A  V  +  +E   
Sbjct: 302 KEKAAEYLRERPELLEEIRAKVLERADKVVLAAGEEEGE 340


>gi|218294700|ref|ZP_03495554.1| recA protein [Thermus aquaticus Y51MC23]
 gi|1350567|sp|P48296|RECA_THEAQ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|349151|gb|AAA27502.1| RecA protein [Thermus aquaticus]
 gi|461417|gb|AAA19796.1| DNA repair protein [Thermus aquaticus]
 gi|218244608|gb|EED11132.1| recA protein [Thermus aquaticus Y51MC23]
          Length = 340

 Score =  331 bits (849), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 189/339 (55%), Positives = 257/339 (75%), Gaps = 3/339 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K K+LE AL  I++ +GKGA+M+LG    +   ++V+ +GSLGLD+ALGIGG P+GR+ 
Sbjct: 4   NKRKSLENALKTIEKEFGKGAVMRLGEMPKL--QVDVIPTGSLGLDLALGIGGIPRGRVT 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPES GKTTLAL  IAQ+QK GG  AFVDAEHALD +YA+KLGVD++ LL+SQPDTG
Sbjct: 62  EIFGPESGGKTTLALTIIAQAQKGGGVAAFVDAEHALDPLYAKKLGVDVQELLVSQPDTG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI ++L RSGAVD+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRKLT+ +
Sbjct: 122 EQALEIVELLARSGAVDVIVVDSVAALVPKAEIEGEMGDQHVGLQARLMSQALRKLTAVL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS-IKDKDSITGNQ 249
           S+S    +FINQ+R K+GVM+G+PETT GG ALKFYSSVRLD+R+ G  IK  +   G +
Sbjct: 182 SKSNTAAIFINQVREKVGVMYGNPETTPGGRALKFYSSVRLDVRKSGQPIKVGNEAVGIK 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKVVKNK+A PF++ E +I +G G+    +L+++ V A +++K+G+WFS+   RLGQG
Sbjct: 242 VKVKVVKNKLAPPFREAELEIYFGRGLDPVMDLVNVAVAAGVIEKAGSWFSYGEHRLGQG 301

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348
           +E +  +LRE  E+ E I + + + A  V  +  +E   
Sbjct: 302 KEKAAEYLRERPELLEEIRAKVLERADKVVLAAGEEEGE 340


>gi|313901147|ref|ZP_07834635.1| RecA protein [Clostridium sp. HGF2]
 gi|312954105|gb|EFR35785.1| RecA protein [Clostridium sp. HGF2]
          Length = 350

 Score =  331 bits (849), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 192/352 (54%), Positives = 267/352 (75%), Gaps = 4/352 (1%)

Query: 1   MDYRKEMNIVD--KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIA 58
           M+  K+    D  K   L+  L QI++ +GKG+IM+LG + S+   I+ +SSGS+ +D A
Sbjct: 1   MEKEKKSQDKDTKKKNLLDDTLKQIEKQFGKGSIMKLGDRASV--EIDAISSGSIKVDEA 58

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LGIGG+PKGRIVEIYGPESSGKTTLALH IA+ QK GG  AF+DAE+A+D  YA+ LGV+
Sbjct: 59  LGIGGYPKGRIVEIYGPESSGKTTLALHAIAEVQKKGGRAAFIDAENAIDPTYAKNLGVN 118

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           + +L++SQPD+GEQAL+IT+ML++SGA+D++V+DSVAAL P+AE++G+MG++  G+QAR+
Sbjct: 119 IDDLILSQPDSGEQALDITEMLIKSGAIDLVVVDSVAALVPQAELDGEMGDANVGLQARM 178

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MS+A+RKL+  ++RS+C  +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLDIRR  +
Sbjct: 179 MSKAMRKLSGIMNRSECTAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDIRRSEA 238

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IK+   I GN+  VKVVKNK+A PFK  + +IMYGEGIS+  EL+DL V   IV KSGAW
Sbjct: 239 IKNGTDIIGNKVNVKVVKNKVAPPFKVAQIEIMYGEGISYVAELLDLCVDHDIVMKSGAW 298

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           FS+ G+++GQG+E +K F++ N  + E + + LR+        + +E     
Sbjct: 299 FSYNGEKIGQGKEAAKTFIKSNPALMEELGAKLREKTAPKKAEVSEEKKEEA 350


>gi|145570087|gb|ABP79193.1| RecA protein [Pseudomonas stutzeri A1501]
          Length = 323

 Score =  331 bits (849), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 205/325 (63%), Positives = 259/325 (79%), Gaps = 3/325 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M++G      + I  +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L  IA++Q
Sbjct: 1   MRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAEAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++D
Sbjct: 59  KMGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVD 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEG+MG++  G+QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFG
Sbjct: 119 SVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           SPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+Y
Sbjct: 179 SPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQILY 238

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           G+GI   GE+IDLGV+  +V+KSGAW+++KG ++GQG+ N+  FL +N EI   IE  +R
Sbjct: 239 GKGIYRNGEIIDLGVQQGLVEKSGAWYAYKGNKIGQGKANAAKFLEDNPEIGREIEQQIR 298

Query: 333 QNAGLVADSLLQEPAINTKDDADKD 357
               LV      +  + ++D  D D
Sbjct: 299 DKL-LVVSGGSSKVNVVSEDLVDAD 322


>gi|160915268|ref|ZP_02077481.1| hypothetical protein EUBDOL_01276 [Eubacterium dolichum DSM 3991]
 gi|158433067|gb|EDP11356.1| hypothetical protein EUBDOL_01276 [Eubacterium dolichum DSM 3991]
          Length = 339

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 186/334 (55%), Positives = 259/334 (77%), Gaps = 2/334 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M+   E    +K+  L+ A+ +I++ +GKG+IM+LG +  +   ++ +SSGS+ +D ALG
Sbjct: 1   MEKVNEKANQEKNALLDDAIKKIEKQFGKGSIMKLGDRSGV--EVDAISSGSIKIDEALG 58

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG+PKGRI+EIYGPESSGKTTLALH IAQ QK GG  AF+DAE+A+D  YA+ LGV++ 
Sbjct: 59  IGGYPKGRIIEIYGPESSGKTTLALHAIAQVQKQGGRAAFIDAENAIDPNYAKNLGVNID 118

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            L++SQPD+GEQ LEITD+L+RSGA+D++V+DSVAAL P+AE++G+MG+   G QAR+MS
Sbjct: 119 ELILSQPDSGEQGLEITDLLIRSGAIDLVVVDSVAALVPQAELDGEMGDMQVGAQARMMS 178

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           +A+RKL+  ++RS+C  +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+RR  +IK
Sbjct: 179 KAMRKLSGVMNRSECTAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRRSEAIK 238

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           +   I GN+  VKVVKNK+A PFK    +IMYGEGIS+  EL+DL V   IV KSGAWFS
Sbjct: 239 NGTEIIGNKVNVKVVKNKVAPPFKTAAIEIMYGEGISYVAELLDLCVDHEIVMKSGAWFS 298

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
           + G+++GQG+E +K +++   E+ E + + L++ 
Sbjct: 299 YNGEKIGQGKEAAKNYIKARPELMEELAAKLKEK 332


>gi|225156145|ref|ZP_03724626.1| Calcium-transporting ATPase [Opitutaceae bacterium TAV2]
 gi|224803123|gb|EEG21365.1| Calcium-transporting ATPase [Opitutaceae bacterium TAV2]
          Length = 385

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 182/341 (53%), Positives = 252/341 (73%), Gaps = 3/341 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K L+ A+S I + +G+G+IM+LG    +   +E +S+GSL +D+ALG+GG P+GRIVEI
Sbjct: 47  RKNLDLAVSAITKQFGEGSIMRLGDAHKM--QVETLSTGSLAVDLALGVGGLPRGRIVEI 104

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTT  L  IA++QK GG  AF+D EHALD  Y+R +GV+L +LL+SQPD+GE 
Sbjct: 105 YGPESSGKTTFCLSVIAEAQKKGGLAAFIDVEHALDPKYSRIVGVNLDDLLVSQPDSGED 164

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           AL I + L+RS A+D+IVIDSVAAL  + E++G MG++  G QARLMSQA+R+LT+ +S+
Sbjct: 165 ALNIAEALIRSNAIDVIVIDSVAALISKQELDGQMGDATVGSQARLMSQAMRRLTAVVSK 224

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSITGNQTR 251
           +KCIL+F NQ+R KIGVMFGSPETT GG ALKF+SS+R+DIRR   IK     I GN+T+
Sbjct: 225 TKCILIFTNQIREKIGVMFGSPETTPGGRALKFFSSIRIDIRRKEQIKQPDGKIIGNRTK 284

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           +KVVKNK+A PF + EFDIMY EGIS  G L+DLG++  I++K GAW S++GQ +GQGR+
Sbjct: 285 IKVVKNKVAPPFTECEFDIMYDEGISRTGSLLDLGIEHKILEKKGAWISYEGQLIGQGRD 344

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
            +K  +R+N E+AE +   + +   +   + +     +  +
Sbjct: 345 AAKQAIRDNPELAEKLSKAIYEKVNVTGGTSVTGSEPDAAE 385


>gi|328944025|ref|ZP_08241490.1| recombination protein A [Atopobium vaginae DSM 15829]
 gi|327491994|gb|EGF23768.1| recombination protein A [Atopobium vaginae DSM 15829]
          Length = 363

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 202/346 (58%), Positives = 260/346 (75%), Gaps = 1/346 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ K LE   ++I++ +GKG+IM+ G  G   E +E + +G+L LD+ALGIGG P+GRI+
Sbjct: 19  ERDKQLETTTAEIEKRFGKGSIMKYGDSGPDLE-VEAIPTGALSLDVALGIGGVPRGRII 77

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+L  +A++Q  GG  AF+DAEHALD  YA ++GVD+  +LISQPDTG
Sbjct: 78  EIYGPESSGKTTLSLEILAEAQALGGVVAFIDAEHALDPNYAARIGVDIDEVLISQPDTG 137

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D++V+DSVAAL PRAEIEG++GE+  G+QARLMSQALRKL  S+
Sbjct: 138 EQALEICDMLVRSGAIDVVVVDSVAALVPRAEIEGEIGETTVGLQARLMSQALRKLAGSL 197

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+SK   +FINQ+R KIGVMFG+PETT GG ALKF+SSVRLDIRRV ++K  + + GN+ 
Sbjct: 198 SKSKTTCIFINQLREKIGVMFGNPETTPGGRALKFFSSVRLDIRRVETLKKNNDMIGNRV 257

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDIMYG GIS  G ++D+  +  IV KSGAWF++  QRLGQGR
Sbjct: 258 RVKVVKNKVAPPFKQAEFDIMYGTGISKEGTVLDMAAELGIVQKSGAWFNYGEQRLGQGR 317

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           E  K FL +N ++ E + + ++   GL        PA      A K
Sbjct: 318 EAVKEFLVQNPDLLEELTNKVKVACGLEFADDDVAPAPVEDAPAKK 363


>gi|223986387|ref|ZP_03636393.1| hypothetical protein HOLDEFILI_03705 [Holdemania filiformis DSM
           12042]
 gi|223961629|gb|EEF66135.1| hypothetical protein HOLDEFILI_03705 [Holdemania filiformis DSM
           12042]
          Length = 343

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 188/325 (57%), Positives = 257/325 (79%), Gaps = 2/325 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K   L+  L QI++ YGKG+IM+LG + ++   I+ +SSGS+ +D ALGIGG+PKGRI+
Sbjct: 7   NKDALLQDTLKQIEKQYGKGSIMKLGDRANV--DIDAISSGSIAIDYALGIGGYPKGRII 64

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH IA+ QK GG  AF+DAE+A+D +YA+ LGV + +L++SQPD+G
Sbjct: 65  EIYGPESSGKTTLALHAIAECQKAGGRAAFIDAENAIDPMYAKNLGVKIDDLILSQPDSG 124

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEIT+ML++SGA+D+IVIDSVAAL P+AE++G+MG+S  G+QARLMS+A+RKL   +
Sbjct: 125 EQALEITEMLIKSGAIDLIVIDSVAALVPQAELDGEMGDSQVGLQARLMSKAMRKLAGVM 184

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +RS+C  +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+RR  +IK+   I GN+ 
Sbjct: 185 NRSQCTAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRRSEAIKNGSEIVGNKV 244

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
            VKVVKNK+A PFK    +IMYGEGIS  GE++ LG    I++KSGAW+S+ G+++GQGR
Sbjct: 245 NVKVVKNKVAPPFKVAAIEIMYGEGISHIGEVVSLGESFEIINKSGAWYSYNGEKIGQGR 304

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
           E  + FL+ N ++ E I + ++   
Sbjct: 305 EAVRAFLKANPQLDEEITAKIKHKL 329


>gi|253583663|ref|ZP_04860861.1| recombination protein RecA [Fusobacterium varium ATCC 27725]
 gi|251834235|gb|EES62798.1| recombination protein RecA [Fusobacterium varium ATCC 27725]
          Length = 373

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 200/365 (54%), Positives = 267/365 (73%), Gaps = 7/365 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M  +K   +  K KAL+ A+ QI + +G+G+IM+LG+  S+   +EV+S+GSL L+IALG
Sbjct: 1   MAAKKNEEMS-KEKALDLAIKQISKEFGEGSIMKLGNNLSM--NVEVISTGSLNLNIALG 57

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG P+GRI+E+YG ESSGKTT+ALH +A++QK GG  AF+DAEHALD +YAR LGVD+ 
Sbjct: 58  VGGVPRGRIIEVYGAESSGKTTIALHIVAEAQKAGGIAAFIDAEHALDPVYARALGVDVD 117

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LLISQPD GEQALEI DMLVRS AVDIIV+DSVAAL P+ EI+G+MG+   G+QARLMS
Sbjct: 118 ELLISQPDYGEQALEIADMLVRSNAVDIIVVDSVAALVPKVEIDGEMGDQQMGLQARLMS 177

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           +ALRKLT+++++SK  +VFINQ+R KIG   FG   TTTGG ALKFYSSVRL+++R+GS+
Sbjct: 178 KALRKLTATLNKSKTTMVFINQIRDKIGGFGFGPQTTTTGGKALKFYSSVRLEVKRIGSV 237

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           K  D + GN+T VKV KNK+A PFK+  F IMYG+GI+  GE++++ +   IV KSGAWF
Sbjct: 238 KQGDEVIGNETVVKVTKNKVAPPFKEAAFQIMYGKGITRVGEIMEIALNNDIVSKSGAWF 297

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK-DDADKDD 358
           SF   RLGQG+EN K  L    E+   IE  + +   +    L  +P+     +  + D+
Sbjct: 298 SFGDIRLGQGKENVKARLETEPELFGQIEKKVMEI--IEKGELDTKPSKKKATESTESDE 355

Query: 359 TDNVE 363
            D +E
Sbjct: 356 NDTLE 360


>gi|89145052|emb|CAJ57534.1| recombinase A [Microbacterium testaceum]
          Length = 294

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 195/296 (65%), Positives = 238/296 (80%), Gaps = 2/296 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LGS       IE + +GS+ LD+ALGIGG P+GRI+EIYGPESSGKTTL LH IA +Q+ 
Sbjct: 1   LGSDDRA--PIETIPTGSVALDVALGIGGLPRGRIIEIYGPESSGKTTLTLHAIANAQRA 58

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DML+RSGA+D++VIDSV
Sbjct: 59  GGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIADMLIRSGAIDLVVIDSV 118

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AAL P AEI+G+MG+S  G+QARLMSQALRKLT  ++ +K   +FINQ+R KIGV FGSP
Sbjct: 119 AALVPEAEIKGEMGDSHVGLQARLMSQALRKLTGGLNTTKTTAIFINQLREKIGVFFGSP 178

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           ETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA PFKQ EFDI+YG 
Sbjct: 179 ETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKMAPPFKQAEFDILYGV 238

Query: 275 GISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
           GIS  G LID GV+ +IV KSGAW+++ G++LGQG+EN++ FL +N +IAE IE  
Sbjct: 239 GISREGSLIDFGVEHAIVKKSGAWYTYDGEQLGQGKENARNFLIKNPDIAEEIEKK 294


>gi|217077528|ref|YP_002335246.1| recombinase A [Thermosipho africanus TCF52B]
 gi|217037383|gb|ACJ75905.1| protein RecA [Thermosipho africanus TCF52B]
          Length = 353

 Score =  331 bits (847), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 193/354 (54%), Positives = 261/354 (73%), Gaps = 9/354 (2%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +   K + L+ A+ +I++ YGKG+IM LG + SI + IE + SGS+ +DIA G+GG+P+G
Sbjct: 4   DNAKKREVLKKAIGKIEKTYGKGSIMFLGEESSI-QNIETIPSGSVAIDIASGVGGYPRG 62

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EIYGPESSGKTT+ALH IA +QK GG  AF+DAEHALD +YA+ LGV++ +LLI+QP
Sbjct: 63  RIIEIYGPESSGKTTIALHAIASAQKNGGVAAFIDAEHALDPVYAQNLGVNVNDLLIAQP 122

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI D LVRS AVDI+VIDSVAAL PRAEIEG MG+   G+QARLMSQALRKL 
Sbjct: 123 DYGEQALEIVDELVRSNAVDIVVIDSVAALVPRAEIEGSMGDVQVGLQARLMSQALRKLA 182

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            +I++SK +++FINQ RMKIGVM+G+PETTTGG ALKFY+++RL++R +G I +     G
Sbjct: 183 GNINKSKTVVIFINQTRMKIGVMYGNPETTTGGVALKFYATMRLEVRGIGKITEGSESVG 242

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR-- 305
           NQ RVK VKNK+A PFK+   DI+YG+GI    EL ++ V   ++ + G+WFS+   +  
Sbjct: 243 NQVRVKFVKNKVAPPFKEAIVDIIYGKGIVRENELFNIAVDEQLITRRGSWFSYVDLKGV 302

Query: 306 ---LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
              LGQG+ NS  +L E+ E+ + IE ++R+  GL+      E   + K ++DK
Sbjct: 303 EHSLGQGKNNSIAYLLEHPELLDEIEGIIREKHGLIKKG---EEKADEKKESDK 353


>gi|78186163|ref|YP_374206.1| recombinase A [Chlorobium luteolum DSM 273]
 gi|78166065|gb|ABB23163.1| RecA DNA recombination protein [Chlorobium luteolum DSM 273]
          Length = 348

 Score =  331 bits (847), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 197/322 (61%), Positives = 257/322 (79%), Gaps = 1/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K K L  A+  +++ +GKGAIM+LG   ++ + ++ +S+GS+ LD ALG+GG P+GR+ E
Sbjct: 17  KLKQLNLAVEALEKQFGKGAIMRLGDDSAVMQ-VQSISTGSMTLDFALGVGGLPRGRVTE 75

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH IA++QK GG  A VDAEHA D  YARKLGVD+  +LISQP++GE
Sbjct: 76  IYGPESSGKTTLALHVIAEAQKAGGIAALVDAEHAFDPSYARKLGVDINAMLISQPESGE 135

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL I + LVRSGAVD++V+DSVAAL P+AE+EG+MG+S+ G+QARLMSQALRKLT +IS
Sbjct: 136 QALSIVETLVRSGAVDVVVVDSVAALVPQAELEGEMGDSVVGLQARLMSQALRKLTGAIS 195

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S  + +FINQ+R KIGVM+GSPETTTGG ALKFYSS+RLDIR++  +KD D I GN+T+
Sbjct: 196 KSSSVCIFINQLRDKIGVMYGSPETTTGGKALKFYSSIRLDIRKIAQLKDGDEIIGNRTK 255

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF+  EFDI+YGEGIS  GELIDL V+  +V K+G+WFS+   +LGQGRE
Sbjct: 256 VKVVKNKVAPPFRIAEFDILYGEGISLMGELIDLAVEFGVVKKAGSWFSYGPDKLGQGRE 315

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
             K  LRE+ E+ + + S ++ 
Sbjct: 316 AVKKALREDPELFKKVHSQVKD 337


>gi|322379036|ref|ZP_08053439.1| recombinase A [Helicobacter suis HS1]
 gi|321148528|gb|EFX43025.1| recombinase A [Helicobacter suis HS1]
          Length = 341

 Score =  331 bits (847), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 213/325 (65%), Positives = 263/325 (80%), Gaps = 3/325 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KALE A+ QI + +GKGA+M+LG +    E IEV S+GSLGLD+ALGIGG PKGRIVE
Sbjct: 5   KQKALELAIKQIDKQFGKGALMRLGDKE--VEHIEVTSTGSLGLDMALGIGGVPKGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTL LH IAQ+Q+ GGTCAF+DAEHALD  YA+KLGVD  NLLISQPDTGE
Sbjct: 63  VYGPESSGKTTLTLHIIAQAQREGGTCAFIDAEHALDVQYAKKLGVDTDNLLISQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           +ALEI + L RSGAVD+IV+DSVAALTPRAEIEGDMG+   G+QARLMSQALRK+T  + 
Sbjct: 123 EALEILETLARSGAVDVIVVDSVAALTPRAEIEGDMGDQHVGLQARLMSQALRKITGILH 182

Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +    L+FINQ+RMKIG M +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+ 
Sbjct: 183 KMNTTLIFINQIRMKIGTMGYGSPETTTGGNALKFYASVRIDIRRIATLKQNEHPIGNRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK+ EFDIMYG+GIS  GELID GVK  +++KSGAWFS+  ++LGQGR
Sbjct: 243 RVKVVKNKVAPPFKEAEFDIMYGDGISQAGELIDYGVKLEVIEKSGAWFSYLDKKLGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
           E +K+ L+ + ++A  I   +++  
Sbjct: 303 EAAKLSLKNDGDLATEIAGKIKEKL 327


>gi|222099768|ref|YP_002534336.1| Protein recA [Thermotoga neapolitana DSM 4359]
 gi|254790454|sp|B9K7N7|RECA_THENN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|221572158|gb|ACM22970.1| Protein recA [Thermotoga neapolitana DSM 4359]
          Length = 351

 Score =  331 bits (847), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 191/343 (55%), Positives = 256/343 (74%), Gaps = 6/343 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K   LE AL +I+  +GKG+IM LG +  + + +EV+ +GS+ +DIA G+GG+P+GRIVE
Sbjct: 7   KKSVLEKALKRIEENFGKGSIMILGDETQV-QPVEVIPTGSIAIDIATGVGGYPRGRIVE 65

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPESSGKTTLALH IA++QK GG  AF+DAEHALD +YA+ LGVDLK+LLISQPD GE
Sbjct: 66  IFGPESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGE 125

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSG VD+IV+DSVAAL PRAEIEG MG+   G+QARLMSQALRK+  S++
Sbjct: 126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVN 185

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +SK +++F NQ+RMKIGVMFGSPETTTGG ALKFY+++RL++RR  ++K+   + GN   
Sbjct: 186 KSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRLEVRRGEALKEGKDVIGNVVN 245

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF---KGQR--L 306
           VK+VKNK+A PFK  +  I+YG+GI    EL  +GV   ++ + G+W+ +   KG+   L
Sbjct: 246 VKIVKNKVAPPFKTAQTYIIYGKGIDREYELFHIGVDEGVITRKGSWYYYTTLKGEEVSL 305

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
           GQG  N   FL+EN +IAE IE  +++  GL+  +  +    +
Sbjct: 306 GQGGSNVVQFLKENPQIAEEIERRIKEKYGLLRQTEKEPEKAD 348


>gi|329754417|gb|ADP92374.2| recombinase [Burkholderia cenocepacia]
          Length = 302

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 216/303 (71%), Positives = 265/303 (87%), Gaps = 1/303 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 120 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 180 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 240 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 299

Query: 309 GRE 311
           G++
Sbjct: 300 GKD 302


>gi|37522985|ref|NP_926362.1| recombinase A [Gloeobacter violaceus PCC 7421]
 gi|60393011|sp|Q7NFV8|RECA_GLOVI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|35213988|dbj|BAC91357.1| recombination protein [Gloeobacter violaceus PCC 7421]
          Length = 369

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 197/327 (60%), Positives = 257/327 (78%), Gaps = 3/327 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +   K KAL+  L+QI+R +G+GAIM+LG    I   +E V SG++ LD+ALG GG P+G
Sbjct: 19  DEAQKQKALKMVLTQIKRNFGEGAIMRLGENTRIR--VETVPSGAITLDLALG-GGLPRG 75

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R++EIYGPESSGKTTLALH IA+ QKTGG  AFVDAEHALD  YA+ LGV++ +L+ISQP
Sbjct: 76  RVIEIYGPESSGKTTLALHAIAEIQKTGGVAAFVDAEHALDPAYAKVLGVNVDDLIISQP 135

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGE A+EI D LVRS A+D+IVIDSVAAL PRAEIEG+MG++  G+QARLMSQALRK+T
Sbjct: 136 DTGEMAMEIVDQLVRSAAIDVIVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKIT 195

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            +I ++ C+++F+NQ+R KIGVM+G+PETTTGGNALKFY+SVRLDIR+  ++K      G
Sbjct: 196 GNIGKTGCMVIFLNQLRSKIGVMYGNPETTTGGNALKFYASVRLDIRKAETLKKGQDEYG 255

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+ RVKVVKNK+A PF++ EFDI++G+GIS  G ++DL V+  IV++ GAW+S+  +RLG
Sbjct: 256 NRVRVKVVKNKVAPPFRKAEFDIIFGKGISSLGCILDLAVEMEIVERKGAWYSYGSERLG 315

Query: 308 QGRENSKIFLRENIEIAENIESLLRQN 334
           QGREN    L EN   A+ IE  +R+ 
Sbjct: 316 QGRENVLALLEENAAQAQEIEIKVREK 342


>gi|224809075|emb|CAX52770.1| recombinase A [Francisella sp. FSC454]
          Length = 321

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 208/306 (67%), Positives = 258/306 (84%), Gaps = 1/306 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG Q +    I+V+ SG + LD+ALGIGG+PKGRI+EIYG ESSGKTTL L  
Sbjct: 1   GKGSIMRLGDQEAAH-DIDVIPSGIIALDVALGIGGYPKGRIIEIYGHESSGKTTLTLLA 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IAQ QK GGT AFVDAEHALD  YA+ LGVD+ NL++SQPDTGEQALEI DMLVRSG VD
Sbjct: 60  IAQCQKQGGTAAFVDAEHALDPKYAKLLGVDVDNLIVSQPDTGEQALEIADMLVRSGGVD 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           I+VIDSVAALTPRAEIEGDMG+S  G+QARLMSQALRKLT++I RS  +++FINQ+RMKI
Sbjct: 120 IVVIDSVAALTPRAEIEGDMGDSHMGLQARLMSQALRKLTANIKRSNTLVIFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRL++R+ GSIKD   ++GN+ +VK+VKNK+A PFKQ +
Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLEVRKGGSIKDGIDVSGNEIKVKIVKNKVAPPFKQAD 239

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           F+++YGEGIS   ELIDLG K +I++KSGAW+S+KG+++GQG+E SK +L+ENI   + I
Sbjct: 240 FELIYGEGISLEAELIDLGAKYNIIEKSGAWYSYKGKKIGQGKEKSKEYLKENIAERDEI 299

Query: 328 ESLLRQ 333
           E  + +
Sbjct: 300 ERAILE 305


>gi|123966977|ref|YP_001012058.1| recombinase A [Prochlorococcus marinus str. MIT 9515]
 gi|166220666|sp|A2BYU0|RECA_PROM5 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|123201343|gb|ABM72951.1| RecA bacterial DNA recombination protein [Prochlorococcus marinus
           str. MIT 9515]
          Length = 370

 Score =  330 bits (845), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 187/321 (58%), Positives = 255/321 (79%), Gaps = 3/321 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL   L QI+R +G+G+IM+LG    +   +E +S+G+L LD+ALG GG+PKGR+VE+YG
Sbjct: 22  ALNLVLGQIERNFGRGSIMRLGDASRM--KVETISTGALTLDLALG-GGYPKGRVVEVYG 78

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL LH IA+ QK GG  AFVDAEHALD +YA  LGVD++NLL+SQPDTGE AL
Sbjct: 79  PESSGKTTLTLHAIAEVQKNGGIAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMAL 138

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EI D L+RS AVD++V+DSVAALTPRAEIEG+MG+ + G QARLMSQA+RK+T +I +S 
Sbjct: 139 EIVDQLIRSTAVDLVVVDSVAALTPRAEIEGEMGDHVIGSQARLMSQAMRKITGNIGKSG 198

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K      G + +VKV
Sbjct: 199 CTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRAKVKV 258

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
            KNK+A PF+  EFDI++G+GIS  G L+DL  + +I+ + GAW+S++G+ +GQGR+N+ 
Sbjct: 259 AKNKVAPPFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYSYEGENIGQGRDNTI 318

Query: 315 IFLRENIEIAENIESLLRQNA 335
           I+L +N+EI + +E +++   
Sbjct: 319 IWLDQNLEIKKKVEGIVKSKL 339


>gi|148284218|ref|YP_001248308.1| recombinase A [Orientia tsutsugamushi str. Boryong]
 gi|146739657|emb|CAM79446.1| recombinase A [Orientia tsutsugamushi str. Boryong]
          Length = 356

 Score =  330 bits (845), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 202/345 (58%), Positives = 271/345 (78%), Gaps = 2/345 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K   L+  LS I + +GKG+IM+           +V+SSGS+ +D ALGIGGFPKGR+ E
Sbjct: 3   KEHTLDDVLSIINKTHGKGSIMRC--NQRPIGKAQVISSGSVCIDTALGIGGFPKGRVSE 60

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPE+SGKTT+ALH +A+ QK G +C ++DAEHALD  YA++LGV++ +L+ISQPDTGE
Sbjct: 61  IYGPEASGKTTVALHAVAECQKGGESCVYIDAEHALDLQYAQRLGVNINSLIISQPDTGE 120

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSGAV +IV+DSVAAL P+AE+EG++G+   G+QARLMSQALRKL +S+S
Sbjct: 121 QALEIADTLVRSGAVGLIVVDSVAALVPKAELEGEIGDHNIGLQARLMSQALRKLVASVS 180

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++ C ++FINQ+RMKIG+MFGSPETTTGGNALKFY+S+R++IR+V  IKDK+ + G QT+
Sbjct: 181 KTNCTIIFINQIRMKIGIMFGSPETTTGGNALKFYASIRMEIRKVSPIKDKEEVIGYQTK 240

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNK+A PFK V+FDI+YG GIS  GELIDLGVK  I++K+GAWFS+K  ++GQGRE
Sbjct: 241 VKIVKNKLAPPFKVVDFDIIYGLGISKEGELIDLGVKLGIIEKAGAWFSYKDHKIGQGRE 300

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           N+K +LRE+  IA  +E  +RQ + ++ +SL+       + + D 
Sbjct: 301 NAKQYLREHPSIALELEQQIRQKSDIIQNSLVITNENEHEANLDN 345


>gi|78188222|ref|YP_378560.1| recombinase A [Chlorobium chlorochromatii CaD3]
 gi|123770898|sp|Q3AU08|RECA_CHLCH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|78170421|gb|ABB27517.1| RecA DNA recombination protein [Chlorobium chlorochromatii CaD3]
          Length = 353

 Score =  330 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 199/322 (61%), Positives = 257/322 (79%), Gaps = 1/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K K L  A+  +++ +GKG IM++G  GS    ++ +S+GS+ LD ALG+GG P+GR+ E
Sbjct: 19  KLKQLNLAVDALEKQFGKGTIMRMGD-GSAGLTVQAISTGSMALDFALGVGGLPRGRVTE 77

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH IA++QK GG  A VDAEHA D  YARKLGVD+  LLISQP++GE
Sbjct: 78  IYGPESSGKTTLALHVIAEAQKEGGITAIVDAEHAFDPSYARKLGVDINALLISQPESGE 137

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QAL I + LVRSGAVD++V+DSVAAL P+AE+EG+MG+S  G+QARLMSQALRKLT +IS
Sbjct: 138 QALSIVETLVRSGAVDVVVVDSVAALVPQAELEGEMGDSSMGLQARLMSQALRKLTGAIS 197

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S  + +FINQ+R KIGVM+GSPETTTGG ALKFYSSVRLDIR++  +KD D +TG++TR
Sbjct: 198 KSSTVCIFINQLRDKIGVMYGSPETTTGGKALKFYSSVRLDIRKIAQLKDGDELTGSRTR 257

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PFK  EFDI+YGEGIS  GELIDLGV+  ++ K+G+WFS+  ++LGQGRE
Sbjct: 258 VKVVKNKVAPPFKMAEFDILYGEGISALGELIDLGVEFGVIKKAGSWFSYGTEKLGQGRE 317

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
           + K  LRE+  + + I   +++
Sbjct: 318 SVKKILREDPVLYQKIHMQVKE 339


>gi|322380801|ref|ZP_08054907.1| recombinase A [Helicobacter suis HS5]
 gi|321146805|gb|EFX41599.1| recombinase A [Helicobacter suis HS5]
          Length = 341

 Score =  329 bits (844), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 212/325 (65%), Positives = 262/325 (80%), Gaps = 3/325 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KALE A+ QI + +GKGA+M+LG +    E IE  S+GSLGLD+ALGIGG PKGRIVE
Sbjct: 5   KQKALELAIKQIDKQFGKGALMRLGDKE--VEHIEATSTGSLGLDMALGIGGVPKGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTL LH IAQ+Q+ GGTCAF+DAEHALD  YA+KLGVD  NLLISQPDTGE
Sbjct: 63  VYGPESSGKTTLTLHIIAQAQREGGTCAFIDAEHALDVQYAKKLGVDTDNLLISQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           +ALEI + L RSGAVD+IV+DSVAALTPRAEIEGDMG+   G+QARLMSQALRK+T  + 
Sbjct: 123 EALEILETLARSGAVDVIVVDSVAALTPRAEIEGDMGDQHVGLQARLMSQALRKITGILH 182

Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +    L+FINQ+RMKIG M +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+ 
Sbjct: 183 KMNTTLIFINQIRMKIGTMGYGSPETTTGGNALKFYASVRIDIRRIATLKQNEHPIGNRV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK+ EFDIMYG+GIS  GELID GVK  +++KSGAWFS+  ++LGQGR
Sbjct: 243 RVKVVKNKVAPPFKEAEFDIMYGDGISQAGELIDYGVKLEVIEKSGAWFSYLDKKLGQGR 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
           E +K+ L+ + ++A  I   +++  
Sbjct: 303 EAAKLSLKNDGDLATEIAGKIKEKL 327


>gi|308237901|emb|CBK52097.1| RecA protein [Acidithiobacillus ferrooxidans]
          Length = 283

 Score =  329 bits (844), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 207/283 (73%), Positives = 248/283 (87%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           V S+GSLGLD+ALG+GG P+GR+VEIYGPESSGKTTL LH IA  Q  GGT AF+DAEHA
Sbjct: 1   VYSTGSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLTLHAIASCQAAGGTAAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YA KLGVDL+NLLISQPDTGEQALEI DMLVRSGAVD+IVIDSVAALTP+AEIEGD
Sbjct: 61  LDPGYAHKLGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGD 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+S  G+QARLMSQALRKLT++ISR+  +++FINQ+RMKIGVM+GSPETTTGGNALKFY
Sbjct: 121 MGDSHVGLQARLMSQALRKLTANISRTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFY 180

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
           +SVRLDIRR+G+IK  D + GN TRVKVVKNK+A PF++ EF I YGEGIS   EL+DLG
Sbjct: 181 ASVRLDIRRIGAIKKSDEVVGNDTRVKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLG 240

Query: 287 VKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           VK  IV+KSGAW+S++G+R+GQG++N++ +L+E+ E+A NIE 
Sbjct: 241 VKFDIVEKSGAWYSYQGERIGQGKDNARQYLKEHPELAANIEQ 283


>gi|302335743|ref|YP_003800950.1| RecA protein [Olsenella uli DSM 7084]
 gi|301319583|gb|ADK68070.1| RecA protein [Olsenella uli DSM 7084]
          Length = 364

 Score =  329 bits (844), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 205/344 (59%), Positives = 262/344 (76%), Gaps = 2/344 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ K +EA  S+I++ +GKGAIM+ G  G   E IE + +GSL LD ALGIGG P+GRI+
Sbjct: 19  EREKMIEATTSEIEKKFGKGAIMKYGEDGPDLE-IEAIPTGSLALDAALGIGGVPRGRII 77

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+L  +A++Q  GG  AF+DAEHALD  YA ++GVD+  +LISQPDTG
Sbjct: 78  EIYGPESSGKTTLSLEVLAEAQAMGGVVAFIDAEHALDPGYAARIGVDIDEVLISQPDTG 137

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D++V+DSVAAL PRAEIEG++G++  G+QARLMSQALRKL  S+
Sbjct: 138 EQALEICDMLVRSGAIDVVVVDSVAALVPRAEIEGEIGDTTVGLQARLMSQALRKLAGSL 197

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+SK   +FINQ+R KIGVMFG+PETT GG ALKF+SSVR+DIRR+ SIK      G++ 
Sbjct: 198 SKSKTTCIFINQLREKIGVMFGNPETTPGGRALKFFSSVRMDIRRIDSIKRNGESVGSRV 257

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDIMYG GIS  G L+D+ V   IV+KSGAWF++  +RLGQGR
Sbjct: 258 RVKVVKNKVAPPFKQAEFDIMYGTGISKEGSLLDMAVDFDIVNKSGAWFTYGTERLGQGR 317

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL-VADSLLQEPAINTKDD 353
           E +K FL  N ++ + I+  +R   GL + D  + EP   + + 
Sbjct: 318 EAAKEFLMANPDLMDEIDHKVRVACGLELGDERVGEPLDASGES 361


>gi|170288756|ref|YP_001738994.1| recA protein [Thermotoga sp. RQ2]
 gi|238688832|sp|B1LAG3|RECA_THESQ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|170176259|gb|ACB09311.1| recA protein [Thermotoga sp. RQ2]
          Length = 356

 Score =  329 bits (844), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 193/333 (57%), Positives = 253/333 (75%), Gaps = 6/333 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K   LE AL +I+  +GKG+IM LG +  + + +EV+ +GSL +DIA G+GG+P+GRIVE
Sbjct: 7   KKSVLEKALKRIEENFGKGSIMILGDETQV-QPVEVIPTGSLAIDIATGVGGYPRGRIVE 65

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+G ESSGKTTLALH IA++QK GG  AF+DAEHALD +YA+ LGVDLK+LLISQPD GE
Sbjct: 66  IFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGE 125

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSG VD+IV+DSVAAL PRAEIEG MG+   G+QARLMSQALRK+  S++
Sbjct: 126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVN 185

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +SK +++F NQ+RMKIGVMFGSPETTTGG ALKFY+++R+++RR   IK+   + GN   
Sbjct: 186 KSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRRGEPIKEGKDVIGNVIN 245

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF---KGQR--L 306
           VK+VKNK+A PFK  +  I+YG+GI    EL ++ V   IVD+ G+W+ +   KG+   L
Sbjct: 246 VKIVKNKVAPPFKTAQTYIIYGKGIDREYELFNIAVNEGIVDRKGSWYYYTTLKGEEVSL 305

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           GQG  N+  FL++N EIA  IE  +R+  GL++
Sbjct: 306 GQGSSNAVQFLKDNPEIAGEIERRIREKYGLLS 338


>gi|150021044|ref|YP_001306398.1| recombinase A [Thermosipho melanesiensis BI429]
 gi|166220690|sp|A6LM62|RECA_THEM4 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|149793565|gb|ABR31013.1| recA protein [Thermosipho melanesiensis BI429]
          Length = 349

 Score =  329 bits (844), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 190/345 (55%), Positives = 254/345 (73%), Gaps = 6/345 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +   K + L+ A+ +I++ +GKG+IM LG + ++ + IE +SSGS+ +DIA G+GG+P+G
Sbjct: 3   DNKQKKEVLKKAIGKIEKTFGKGSIMFLGEENAV-QNIETISSGSVAIDIASGVGGYPRG 61

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTT+ALH IA +QK GG  AFVDAEHALD +YA+ LGVD++NLLI+QP
Sbjct: 62  RIVEIYGPESSGKTTIALHAIASAQKNGGIAAFVDAEHALDPVYAKNLGVDVENLLIAQP 121

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI D LVRS AVD++VIDSVAAL PRAEIEG MG+   G+QARLMSQALRKL 
Sbjct: 122 DYGEQALEIVDELVRSNAVDLVVIDSVAALVPRAEIEGSMGDVQVGLQARLMSQALRKLA 181

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            +I++SK +++FINQ RMKIGVM+G+PETTTGG ALKFYS++RL++R +G I +     G
Sbjct: 182 GNINKSKAVVIFINQTRMKIGVMYGNPETTTGGVALKFYSTMRLEVRSIGKITEGKESIG 241

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG---- 303
           NQ R+K VKNK+A PFK+   D++YG+GI    EL +L V   ++ + G+WFS+      
Sbjct: 242 NQVRIKFVKNKVAPPFKEAIVDVIYGKGIVRENELFNLAVDEGLISRRGSWFSYVDSTGT 301

Query: 304 -QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
              LGQG+ NS  +L  + E+ + IE  +R+  GL+      E  
Sbjct: 302 EHSLGQGKNNSLDYLLNHPELLDEIEEKIREKHGLLKKGEKSEEE 346


>gi|253582692|ref|ZP_04859913.1| recombination protein RecA [Fusobacterium varium ATCC 27725]
 gi|251835562|gb|EES64102.1| recombination protein RecA [Fusobacterium varium ATCC 27725]
          Length = 363

 Score =  329 bits (844), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 197/334 (58%), Positives = 258/334 (77%), Gaps = 3/334 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +  K   + +K KALE A+ QI++ +G+G+IM+LG    +   +EV+S+GS+ LD ALG+
Sbjct: 6   NTEKNREVSEKEKALELAMKQIKKDFGEGSIMKLGDNQEM--NVEVISTGSINLDAALGL 63

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GRIVEIYG ESSGKTT+ALH  A++QKTGG  AF+DAEHALD +YA+ LGVD+  
Sbjct: 64  GGVPRGRIVEIYGAESSGKTTIALHIAAEAQKTGGIVAFIDAEHALDPVYAKALGVDVDE 123

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLISQPD GEQALEI DMLVRSGAVD+IV+DSVAAL P+ EI+G+MG+   G+QARLMS+
Sbjct: 124 LLISQPDYGEQALEIADMLVRSGAVDLIVVDSVAALVPKVEIDGEMGDQQMGLQARLMSK 183

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           ALRKLT+++++SK  +VFINQ+R KIG   FG   TTTGG ALKFYSSVR++++R+GS+K
Sbjct: 184 ALRKLTATLNKSKTTMVFINQIRDKIGGFGFGPQTTTTGGKALKFYSSVRMEVKRIGSVK 243

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             D + GN+T VKV KNK+A PFK+  F IMYG+GIS  GE++D+ ++  IV KSGAWFS
Sbjct: 244 QGDEVIGNETVVKVTKNKIAPPFKEAAFQIMYGKGISRVGEILDMAIEKDIVAKSGAWFS 303

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
           F   RLGQG+EN K+ L   IE+   IE  +++ 
Sbjct: 304 FGDIRLGQGKENVKVRLETEIELLAKIEEEVKKA 337


>gi|15644602|ref|NP_229655.1| recombinase A [Thermotoga maritima MSB8]
 gi|548716|sp|P36203|RECA_THEMA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|297787594|pdb|3HR8|A Chain A, Crystal Structure Of Thermotoga Maritima Reca
 gi|4982444|gb|AAD36921.1|AE001823_3 DNA repair protein [Thermotoga maritima MSB8]
 gi|385170|gb|AAA27417.1| DNA repair protein [Thermotoga maritima]
          Length = 356

 Score =  329 bits (844), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 193/333 (57%), Positives = 253/333 (75%), Gaps = 6/333 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K   LE AL +I+  +GKG+IM LG +  + + +EV+ +GSL +DIA G+GG+P+GRIVE
Sbjct: 7   KKSVLEKALKRIEENFGKGSIMILGDETQV-QPVEVIPTGSLAIDIATGVGGYPRGRIVE 65

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+G ESSGKTTLALH IA++QK GG  AF+DAEHALD +YA+ LGVDLK+LLISQPD GE
Sbjct: 66  IFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGE 125

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSG VD+IV+DSVAAL PRAEIEG MG+   G+QARLMSQALRK+  S++
Sbjct: 126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVN 185

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +SK +++F NQ+RMKIGVMFGSPETTTGG ALKFY+++R+++RR   IK+   + GN   
Sbjct: 186 KSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRRGEPIKEGKDVIGNVIS 245

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF---KGQR--L 306
           VK+VKNK+A PFK  +  I+YG+GI    EL ++ V   IVD+ G+W+ +   KG+   L
Sbjct: 246 VKIVKNKVAPPFKTAQTYIIYGKGIDREYELFNIAVNEGIVDRKGSWYYYTTLKGEEVSL 305

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           GQG  N+  FL++N EIA  IE  +R+  GL++
Sbjct: 306 GQGSSNAVQFLKDNPEIAGEIERRIREKYGLLS 338


>gi|108762868|ref|YP_629698.1| recA protein [Myxococcus xanthus DK 1622]
 gi|1350556|sp|P48291|RECA1_MYXXA RecName: Full=Protein RecA 1; AltName: Full=Recombinase A 1
 gi|848994|gb|AAC37000.1| recA1 [Myxococcus xanthus]
 gi|108466748|gb|ABF91933.1| recA protein [Myxococcus xanthus DK 1622]
          Length = 342

 Score =  329 bits (844), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 200/341 (58%), Positives = 271/341 (79%), Gaps = 4/341 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
            + +K KA+ AA++ I++ +G+G++M LG +    + + V+ SGS+G+D ALG+GG+P+G
Sbjct: 3   KLAEKLKAVAAAVASIEKQFGRGSVMTLGGEARE-QKVAVIPSGSVGVDRALGVGGYPRG 61

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R+VE++G ESSGKTTL LH IAQ Q  GG  AF+DAEHALD  YARKLGV ++ LL+SQP
Sbjct: 62  RVVEVFGNESSGKTTLTLHAIAQVQAAGGVAAFIDAEHALDVSYARKLGVRVEELLVSQP 121

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEIT+ LVRSGAVD+IV+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKLT
Sbjct: 122 DTGEQALEITEHLVRSGAVDLIVVDSVAALVPRAEIEGEMGDAHMGVQARLMSQALRKLT 181

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++SRS   ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR++IRR G+IKD D++ G
Sbjct: 182 GAVSRSGTCIIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMEIRRTGNIKDGDAVVG 241

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           ++ RVKVVKNK+A PF++ EFD+MYG GI   GE++DLGV   +++KSG++FS +G+R+G
Sbjct: 242 SKARVKVVKNKVAPPFQEAEFDLMYGSGIHRVGEVLDLGVATGLIEKSGSYFSLRGERIG 301

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348
           QGRE +  +LRE+ ++   +E+L ++  G  A      P  
Sbjct: 302 QGRERAAEWLREHPDV---LEALGKEITGTSALPSSPAPVE 339


>gi|225462225|ref|XP_002271727.1| PREDICTED: similar to replicase [Vitis vinifera]
          Length = 415

 Score =  329 bits (844), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 178/360 (49%), Positives = 245/360 (68%), Gaps = 5/360 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +    +   +D+ KALEAA++ I   +GKG++ +LGS G     +E   SG L LD ALG
Sbjct: 53  LSSDPDPRFLDRQKALEAAMNDINSSFGKGSVTRLGSAGGAL--VETFPSGCLTLDFALG 110

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG PKGRIVEIYGPESSGKTTLALH IA+ QK GG    VDAEHA D  Y++ LGVD++
Sbjct: 111 -GGLPKGRIVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVE 169

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL++ QPD GE ALEI D + RSGA+D+I +DSV+ALTPRAEIEG++G    G+QARLMS
Sbjct: 170 NLIVCQPDHGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMS 229

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRK++ + S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++S+RL+IR +G IK
Sbjct: 230 QALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASLRLEIRPIGKIK 289

Query: 241 --DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
               D   G + RV+V K+K++ P+KQ EF+I++GEG+S  G ++D      +V K G+W
Sbjct: 290 SSKGDEDIGLRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCILDCAELMDVVVKKGSW 349

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           +S+   RLGQGR+ +  +LREN  +   IE ++R         L       +    + +D
Sbjct: 350 YSYGDNRLGQGRDRALQYLRENPLVCHEIEKIVRPMMAEGIGQLGAPHVRLSPTSPEDED 409


>gi|308237903|emb|CBK52098.1| RecA protein [Acidithiobacillus ferrooxidans]
          Length = 284

 Score =  329 bits (844), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 206/282 (73%), Positives = 247/282 (87%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLD+ALG+GG P+GR+VEIYGPESSGKTTL LH IA  Q  GGT AF+DAEHALD
Sbjct: 1   STGSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLTLHAIASCQAAGGTAAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
             YA KLGVDL+NLLISQPDTGEQALEI DMLVRSGAVD+IVIDSVAALTP+AEIEGDMG
Sbjct: 61  PGYAHKLGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGDMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRKLT++ISR+  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+S
Sbjct: 121 DSHVGLQARLMSQALRKLTANISRTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           VRLDIRR+G+IK  D + GN TRVKVVKNK+A PF++ EF I YGEGIS   EL+DLGVK
Sbjct: 181 VRLDIRRIGAIKKSDEVVGNDTRVKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVK 240

Query: 289 ASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
             IV+KSGAW+S++G+R+GQG++N++ +L+E+ E+A NIE  
Sbjct: 241 FDIVEKSGAWYSYQGERIGQGKDNARQYLKEHPELAANIEQR 282


>gi|296837453|gb|ADH59585.1| DNA recombinase [Burkholderia vietnamiensis]
          Length = 292

 Score =  329 bits (843), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 211/292 (72%), Positives = 256/292 (87%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
            G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT
Sbjct: 1   DGDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGT 60

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL
Sbjct: 61  AAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAAL 120

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
            P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETT
Sbjct: 121 VPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETT 180

Query: 218 TGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277
           TGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS
Sbjct: 181 TGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGIS 240

Query: 278 FFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
             GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+
Sbjct: 241 RQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 292


>gi|310777953|ref|YP_003966286.1| recA protein [Ilyobacter polytropus DSM 2926]
 gi|309747276|gb|ADO81938.1| recA protein [Ilyobacter polytropus DSM 2926]
          Length = 353

 Score =  329 bits (843), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 201/361 (55%), Positives = 270/361 (74%), Gaps = 12/361 (3%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           + +  I DK KALE A+ QIQ+ +G+G+IM+LG+   +   +E +S+GS+G+D+ALG+GG
Sbjct: 3   KAKKEIADKDKALEVAMKQIQKDFGEGSIMKLGANTHM--NVETISTGSIGIDMALGLGG 60

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P+GR+VEIYG ES GKTT+ALH +A++QK GG  AF+DAEHALD  YAR LGVD+  LL
Sbjct: 61  VPRGRVVEIYGAESCGKTTVALHIVAEAQKKGGIAAFIDAEHALDPAYARALGVDVDELL 120

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           ISQPD GEQALEI DMLVRSGAVD+IV+DSVAAL P++EIEG+MG+   G+QARLMS+AL
Sbjct: 121 ISQPDNGEQALEIGDMLVRSGAVDVIVVDSVAALVPKSEIEGEMGDQQMGLQARLMSKAL 180

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           RKLT S+++SK  ++FINQ+R KIG   FG   TTTGG ALKFYSSVR++I+R+GS+K  
Sbjct: 181 RKLTGSLNKSKTTMIFINQIREKIGGFGFGPQTTTTGGRALKFYSSVRMEIKRIGSVKQG 240

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           D++ GN+T +K+ KNK+A PFK+ +F IMYG+GIS  GE++D+ +   IV KSGAWFS+ 
Sbjct: 241 DNVIGNETSIKITKNKIAPPFKEAKFQIMYGKGISRAGEILDMAIDNDIVSKSGAWFSYG 300

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
             RLGQG+EN K+ L E  ++   IES L         + +  P     + A+ +DT++ 
Sbjct: 301 DIRLGQGKENVKLRLEEEKDLLGQIESDL---------NKILFPEAEVSEKAENEDTESK 351

Query: 363 E 363
           E
Sbjct: 352 E 352


>gi|228955965|ref|ZP_04117900.1| hypothetical protein bthur0006_52830 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228803709|gb|EEM50393.1| hypothetical protein bthur0006_52830 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 366

 Score =  329 bits (843), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 201/342 (58%), Positives = 268/342 (78%), Gaps = 2/342 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KALE AL +I++ +GKGA+M+LG +    + I VVSSGS+GLD ALG+GG+PKGRI E
Sbjct: 19  KEKALEEALKKIEKDFGKGAVMKLGERPE--QKISVVSSGSVGLDNALGVGGYPKGRITE 76

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPESSGKTTLALH IA+ QK GGT AF+DAEHALD +YA KLGV++  L +SQP+TGE
Sbjct: 77  IFGPESSGKTTLALHAIAEVQKQGGTAAFIDAEHALDPVYAEKLGVNIDELFVSQPNTGE 136

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           +ALEI + LVRS AV+IIV+DSVAAL P+AEI+GDMG S  G+QARLM QALRK++ ++S
Sbjct: 137 EALEIAEALVRSSAVEIIVVDSVAALVPQAEIDGDMGASHVGLQARLMGQALRKISGAVS 196

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++  I +F+NQ+R K+GV FG+PETT GG ALKFYS+VRL++RR   +K    I GN+T+
Sbjct: 197 KNGVIAIFLNQLREKVGVSFGNPETTPGGRALKFYSTVRLEVRRSEQLKQGSDIVGNKTK 256

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PF+ +EFDIMYGEGIS  GEL+D+GV   IV KSG+W+S+K +RLGQGR+
Sbjct: 257 VKVVKNKVAPPFRNLEFDIMYGEGISLEGELVDIGVGLDIVQKSGSWYSYKEERLGQGRD 316

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           N+K FL+EN  I  ++ + + +      +S++ E  +  +++
Sbjct: 317 NAKQFLKENENIRNSVRNEIYEYYSPKEESIIVEEELIKENE 358


>gi|206896302|ref|YP_002247160.1| protein RecA [Coprothermobacter proteolyticus DSM 5265]
 gi|206738919|gb|ACI17997.1| protein RecA [Coprothermobacter proteolyticus DSM 5265]
          Length = 344

 Score =  329 bits (843), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 180/333 (54%), Positives = 248/333 (74%), Gaps = 2/333 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M+     N  DK KAL+  +  +++ +GKG++M+LG  GS  + +E +S+G+L LD+ALG
Sbjct: 1   METTDRQNQDDKQKALDMTVQYVEKRFGKGSLMRLGETGSRMQ-VETISTGALTLDLALG 59

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG P+GRIVEIYGPE SGKTTLALH IA +QK GGT  F+DAEHALD +YARKLGVD++
Sbjct: 60  IGGIPRGRIVEIYGPEGSGKTTLALHIIANAQKNGGTAVFIDAEHALDPVYARKLGVDVE 119

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL ISQPD GEQALEI + L +SGAVD+IVIDSVAAL P+AE++G++G+S  G+QARLMS
Sbjct: 120 NLYISQPDYGEQALEIAEELSKSGAVDVIVIDSVAALVPKAELDGEIGDSFMGLQARLMS 179

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI- 239
           QALRKLT   S++   +VF+NQ+R K+G+ FG+PE T GG ALKF++S R+++R+  +I 
Sbjct: 180 QALRKLTGIASKTGTAIVFLNQLREKVGITFGNPEVTPGGRALKFFASARIELRKSENIG 239

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
              D+  G   + K+VKNK+A PF+   FD+ +G+GIS+   ++D  + A ++ KSG+W+
Sbjct: 240 GSGDASEGAVIKAKIVKNKLAPPFRTATFDLYFGKGISWTASVVDAALIAGVIQKSGSWY 299

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           S+   RLGQG+EN+  FL E+ E    IES +R
Sbjct: 300 SYNDIRLGQGKENAVSFLEEHPETLAEIESAVR 332


>gi|148878989|emb|CAM07010.1| RecA protein [Mycobacterium sp. MG3]
          Length = 293

 Score =  329 bits (842), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 190/292 (65%), Positives = 243/292 (83%), Gaps = 2/292 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q
Sbjct: 1   MRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
             GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTGEQALEI DMLVRSGA+ ++VID
Sbjct: 59  AAGGIAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAISLLVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFG
Sbjct: 119 SVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           SPETTTGG ALKFYSSVRLD+RR+ ++KD     GN+TRVKVVKNK++ PFKQ EFDI+Y
Sbjct: 179 SPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILY 238

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           G+GIS  G LID+GV+   + KSG+WF+++G++LGQG+EN++ FL EN+++A
Sbjct: 239 GKGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGKENARNFLLENVDVA 290


>gi|229495459|ref|ZP_04389194.1| protein RecA [Porphyromonas endodontalis ATCC 35406]
 gi|229317902|gb|EEN83800.1| protein RecA [Porphyromonas endodontalis ATCC 35406]
          Length = 357

 Score =  329 bits (842), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 187/333 (56%), Positives = 260/333 (78%), Gaps = 4/333 (1%)

Query: 5   KEMNIVDKSK--ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
           KE   +DK+K  A++ A+ +I++ YGKG+IM +G + S  + ++V+ +GSL LD+ALG+G
Sbjct: 21  KEKVAIDKNKLAAIQMAMERIEKTYGKGSIMNMGERTS--DSVDVIPTGSLALDVALGVG 78

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G+P+GRI+EIYGPESSGKTTLA+H IA++Q+ GG  A +DAEHA D  YA  LGVD++ L
Sbjct: 79  GYPRGRIIEIYGPESSGKTTLAIHAIAEAQRMGGLAAIIDAEHAFDPTYAEHLGVDIERL 138

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
            ISQPD GEQALEI + L+RS AVD++V+DSVAALTP+ EIEG+MG+   G+QARLMSQA
Sbjct: 139 WISQPDNGEQALEIAEQLIRSSAVDVVVVDSVAALTPKQEIEGEMGDKNIGLQARLMSQA 198

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           LRK+TS++S+S  + +FINQ+R KIGV +G+PETTTGGNALKFY+SVRLDIRR   +K+ 
Sbjct: 199 LRKMTSAVSKSNAVCIFINQLREKIGVTYGNPETTTGGNALKFYASVRLDIRRKTQLKNG 258

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           D + GN+TRVKVVKNK++ PFK  EF+I++GEGIS   E+I+LG    I+ KSG+W+S+ 
Sbjct: 259 DDVYGNETRVKVVKNKVSPPFKTAEFEIIFGEGISSESEIINLGTDFGILQKSGSWYSYD 318

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
           G +LGQG++  +  L++N E++  +   + +  
Sbjct: 319 GTKLGQGKDAVRRILQDNPELSSELREKIGEAL 351


>gi|283781556|ref|YP_003372311.1| recA protein [Pirellula staleyi DSM 6068]
 gi|283440009|gb|ADB18451.1| recA protein [Pirellula staleyi DSM 6068]
          Length = 358

 Score =  329 bits (842), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 170/324 (52%), Positives = 244/324 (75%), Gaps = 2/324 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           + ++ +  L+ AL QI++ +G+G+IM LG    +   I  + +GSL LD+ALG  G P+G
Sbjct: 21  DAIENNSVLKNALQQIEKQFGEGSIMPLGGDRQMV--IHGIPTGSLSLDLALGGKGIPRG 78

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EI+GPESSGKTTLALH  AQ+QK GG  A +DAEHA D  + +KLGV L  LL+SQP
Sbjct: 79  RIIEIFGPESSGKTTLALHVAAQAQKAGGIAAIIDAEHAFDPTWGKKLGVQLDTLLVSQP 138

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           + GE+A++IT+MLV+S AVD+I+IDSVAAL P+ E++G++G++  G+QARLMSQ++RKLT
Sbjct: 139 NNGEEAMQITEMLVKSNAVDVIIIDSVAALVPKQELDGEIGDTHVGLQARLMSQSMRKLT 198

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            +I+RSK  ++FINQ+R KIGV +GSPETT GG ALKFY+S R+D+RR+  IKD + + G
Sbjct: 199 GAIARSKTAVIFINQIREKIGVSYGSPETTPGGRALKFYASCRIDVRRISQIKDGEDVVG 258

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
            + R KVVKNK+A PF+  EFD+M+  GIS+ G+++D+G++A ++ +SGAWF +    +G
Sbjct: 259 QRVRTKVVKNKVAPPFRVAEFDMMHTCGISYEGDILDMGLEAKVLTRSGAWFKYNDAYIG 318

Query: 308 QGRENSKIFLRENIEIAENIESLL 331
           QG+E ++  L+EN  I E I   +
Sbjct: 319 QGKEKARTHLQENPHITEEIRLKI 342


>gi|189183947|ref|YP_001937732.1| RecA protein [Orientia tsutsugamushi str. Ikeda]
 gi|189180718|dbj|BAG40498.1| RecA protein [Orientia tsutsugamushi str. Ikeda]
          Length = 356

 Score =  329 bits (842), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 202/345 (58%), Positives = 272/345 (78%), Gaps = 2/345 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K   L+  LS I + +GKG+IM+           +V+SSGS+ +D ALGIGGFPKGR+ E
Sbjct: 3   KEHTLDDVLSIINKTHGKGSIMRC--NQRPIGKAQVISSGSVCIDTALGIGGFPKGRVSE 60

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPE+SGKTT+ALH +A+ QK G +C ++DAEHALD  YA+KLGV++ +L+ISQPDTGE
Sbjct: 61  IYGPEASGKTTVALHAVAECQKGGESCVYIDAEHALDLQYAQKLGVNINSLIISQPDTGE 120

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSGAV +IV+DSVAAL P+AE+EG++G++  G+QARLMSQALRKL +S+S
Sbjct: 121 QALEIADTLVRSGAVGLIVVDSVAALVPKAELEGEIGDNNIGLQARLMSQALRKLVASVS 180

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++ C ++FINQ+RMKIG+MFGSPETTTGGNALKFY+S+R++IR+V  IKDK+ + G QT+
Sbjct: 181 KTNCTIIFINQIRMKIGIMFGSPETTTGGNALKFYASIRMEIRKVSPIKDKEEVIGYQTK 240

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VK+VKNK+A PFK V+FDI+YG GIS  GE+IDLGVK  I++K+GAWFS+K  ++GQGRE
Sbjct: 241 VKIVKNKLAPPFKVVDFDIIYGLGISKEGEIIDLGVKLGIIEKAGAWFSYKDHKIGQGRE 300

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           N+K +LRE+  IA  +E  +RQ + ++ +SL+       + + D 
Sbjct: 301 NAKQYLREHPSIALELEQQIRQKSDIIQNSLVIPNENEHEANLDN 345


>gi|257784582|ref|YP_003179799.1| recA protein [Atopobium parvulum DSM 20469]
 gi|257473089|gb|ACV51208.1| recA protein [Atopobium parvulum DSM 20469]
          Length = 362

 Score =  329 bits (842), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 205/346 (59%), Positives = 267/346 (77%), Gaps = 2/346 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ + + +  ++I++ +G GAIM+LG  G  F  I+ + +GSL LD ALGIGG P+GRIV
Sbjct: 18  ERDEVISSTTAEIEKKFGAGAIMRLGEGGPAF-DIQAIPTGSLALDAALGIGGVPRGRIV 76

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL+L  +A++Q  GG  AF+DAEHALD  YA ++GVD+ ++LISQPDTG
Sbjct: 77  EIYGPESSGKTTLSLEILAEAQALGGVVAFIDAEHALDPGYAARIGVDIDDVLISQPDTG 136

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI DMLVRSGA+D++V+DSVAAL PRAEIEG++G+S  G+QARLMSQALRKL  S+
Sbjct: 137 EQALEICDMLVRSGAIDVVVVDSVAALVPRAEIEGEIGDSSVGLQARLMSQALRKLAGSL 196

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+S  + +FINQ+R KIGVMFGSPETT+GG ALKF+S+VR+DIRRV SIK      GN+ 
Sbjct: 197 SKSNTLCIFINQLREKIGVMFGSPETTSGGRALKFFSTVRMDIRRVDSIKVNGENVGNRV 256

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFK  EFDIMYG+GIS  G ++D+ V   IV+KSGAWF+++G+RLGQGR
Sbjct: 257 RVKVVKNKVAPPFKVAEFDIMYGQGISKEGSILDMAVDFEIVNKSGAWFTYEGERLGQGR 316

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ-EPAINTKDDAD 355
           E +K FL  N ++ E I+  +R   GLV D   +    + T+D A+
Sbjct: 317 EAAKSFLTANPDLMEEIDHKVRVACGLVFDEDSEVGTPVATEDSAE 362


>gi|148878999|emb|CAM07015.1| RecA protein [Mycobacterium sp. MG8]
          Length = 291

 Score =  329 bits (842), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 190/292 (65%), Positives = 243/292 (83%), Gaps = 2/292 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q
Sbjct: 1   MRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
             GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTGEQALEI DMLVRSGA+ ++VID
Sbjct: 59  AAGGIAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAISLLVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFG
Sbjct: 119 SVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           SPETTTGG ALKFYSSVRLD+RR+ ++KD     GN+TRVKVVKNK++ PFKQ EFDI+Y
Sbjct: 179 SPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILY 238

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           G+GIS  G LID+GV+   + KSG+WF+++G++LGQG+EN++ FL EN+++A
Sbjct: 239 GKGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGKENARNFLLENVDVA 290


>gi|282890378|ref|ZP_06298906.1| hypothetical protein pah_c016o106 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499760|gb|EFB42051.1| hypothetical protein pah_c016o106 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 357

 Score =  329 bits (842), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 197/357 (55%), Positives = 265/357 (74%), Gaps = 6/357 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +  ++ KAL+ A+S I++ +G GAIM LGS  S+ E I V+ +G+L LD+ALGIGG P+G
Sbjct: 5   SEAERKKALDLAVSHIKKQFGDGAIMSLGSHSSMRE-ISVIKTGALTLDVALGIGGIPRG 63

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EI+GPESSGK+TLA H +A +QK GG  A++DAEHALD  YA K+GV++  LLISQP
Sbjct: 64  RIIEIFGPESSGKSTLATHIVANAQKAGGLAAYIDAEHALDPSYAAKIGVNVDELLISQP 123

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D+GE+AL I + L RS AVD+IVIDSVAAL P++E+EG++G+S  G+QAR+MSQALRKL 
Sbjct: 124 DSGEEALNIAETLARSNAVDVIVIDSVAALVPKSELEGEIGDSFIGLQARMMSQALRKLA 183

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSIT 246
           +++++S    +FINQ+R KIGVMFG+PETTTGG ALKFYSS+RLDIRR   IK   +S  
Sbjct: 184 ATLAKSNTCAIFINQIREKIGVMFGNPETTTGGRALKFYSSIRLDIRRTAGIKGPDNSEV 243

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ +VKVVKNK+A PF+  EFDI++ EGIS  G +IDLG +  I+DK GAWFS++GQRL
Sbjct: 244 GNRVKVKVVKNKVAPPFRSAEFDILFNEGISRTGAVIDLGTEYQIIDKKGAWFSYQGQRL 303

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           GQGRE  +  L+ N ++ + IE L+ Q         L   ++ +    D D+ + VE
Sbjct: 304 GQGREAVRDELKTNPKLLDEIEQLIMQKC----KDGLATTSLKSAAHVDADEKELVE 356


>gi|239617936|ref|YP_002941258.1| recA protein [Kosmotoga olearia TBF 19.5.1]
 gi|239506767|gb|ACR80254.1| recA protein [Kosmotoga olearia TBF 19.5.1]
          Length = 355

 Score =  328 bits (841), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 200/362 (55%), Positives = 267/362 (73%), Gaps = 12/362 (3%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M+ R++     K  ALE A+ +I++ +GKGA+M LG Q      I+VV +GSL LDIALG
Sbjct: 1   MNSREDKA---KKIALEKAIKEIEKQFGKGAVMLLGDQ-EARANIDVVPTGSLSLDIALG 56

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG+P+GR+VEIYG ESSGKTT+ALH IA+ QK GGT AFVDAEHALD  YAR LGVD+ 
Sbjct: 57  VGGYPRGRVVEIYGSESSGKTTVALHAIAEVQKMGGTAAFVDAEHALDISYARALGVDVD 116

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NLLISQPD GEQALEI + LVRS AVD++V+DSVAAL PRAEIEG MG+   G+QARLMS
Sbjct: 117 NLLISQPDYGEQALEIVESLVRSNAVDLVVVDSVAALVPRAEIEGSMGDMQVGLQARLMS 176

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRK++ ++S+S+ I++FINQ RMKIGV++G+PETTTGG ALKFYSS+RL+IRR  +I+
Sbjct: 177 QALRKISGTVSKSRSIVMFINQTRMKIGVVYGNPETTTGGVALKFYSSIRLEIRRGAAIR 236

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           + +++ GN+T +KVVKNK+A PFK  + D++YG GI    EL +L VK   +++ GAW++
Sbjct: 237 EGNNVIGNETYIKVVKNKVAPPFKDAKVDLIYGRGIVRENELFELAVKEGFIERKGAWYT 296

Query: 301 F-----KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           +     K   LGQG+ N   FL  N EI   IE+ +R+   L     ++E +   K++ +
Sbjct: 297 YISQDGKEISLGQGKSNGINFLMANSEILLEIENRIREKYSL---PKVEEKSEKVKENGE 353

Query: 356 KD 357
           K+
Sbjct: 354 KE 355


>gi|308237905|emb|CBK52099.1| RecA protein [Acidithiobacillus ferrooxidans]
          Length = 281

 Score =  328 bits (841), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 206/280 (73%), Positives = 247/280 (88%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLD+ALG+GG P+GR+VEIYGPESSGKTTL LH IA  Q  GGT AF+DAEHALD
Sbjct: 2   STGSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLTLHAIASCQAAGGTAAFIDAEHALD 61

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
             YA KLGVDL+NLLISQPDTGEQALEI DMLVRSGAVD+IVIDSVAALTP+AEIEGDMG
Sbjct: 62  PGYAHKLGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGDMG 121

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRKLT++ISR+  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+S
Sbjct: 122 DSHVGLQARLMSQALRKLTANISRTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYAS 181

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           VRLDIRR+G+IK  D + GN TRVKVVKNK+A PF++ EF I YGEGIS   EL+DLGVK
Sbjct: 182 VRLDIRRIGAIKKSDEVVGNDTRVKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVK 241

Query: 289 ASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
             IV+KSGAW+S++G+R+GQG++N++ +L+E+ E+A NIE
Sbjct: 242 FDIVEKSGAWYSYQGERIGQGKDNARQYLKEHPELAANIE 281


>gi|257470667|ref|ZP_05634757.1| recA protein [Fusobacterium ulcerans ATCC 49185]
 gi|317064873|ref|ZP_07929358.1| recombinase A [Fusobacterium ulcerans ATCC 49185]
 gi|313690549|gb|EFS27384.1| recombinase A [Fusobacterium ulcerans ATCC 49185]
          Length = 363

 Score =  328 bits (841), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 195/352 (55%), Positives = 261/352 (74%), Gaps = 3/352 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +  K   + +K KALE A+ QI++ +G+G+IM+LG    +   IEV+S+GS+ LD ALG+
Sbjct: 6   NTEKNREVSEKEKALELAMKQIKKDFGEGSIMKLGDNQEM--NIEVISTGSINLDAALGL 63

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GR+VEIYG ESSGKTT+ALH  A++QK GG  AF+DAEHALD +YA+ LGVD+  
Sbjct: 64  GGVPRGRVVEIYGAESSGKTTIALHIAAEAQKAGGIVAFIDAEHALDPVYAKALGVDVDE 123

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLISQPD GEQALEI DMLVRSGAVD I++DSVAAL P+ EI+G+MG+   G+QARLMS+
Sbjct: 124 LLISQPDYGEQALEIADMLVRSGAVDAIIVDSVAALVPKVEIDGEMGDQQMGLQARLMSK 183

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           ALRKLT+++++SK  ++FINQ+R KIG   FG   TTTGG ALKFYSSVR++++R+GS+K
Sbjct: 184 ALRKLTATLNKSKTTMIFINQIRDKIGGFGFGPQTTTTGGKALKFYSSVRMEVKRIGSVK 243

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             D + GN+T VKV KNK+A PFK+  F IMYG+GIS  GE++D+ ++  IV KSGAWFS
Sbjct: 244 QGDEVIGNETVVKVTKNKIAPPFKEAAFQIMYGKGISRVGEILDMAIEKDIVAKSGAWFS 303

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           F   RLGQG+EN K+ L   +E+ E IE  +++         ++      K+
Sbjct: 304 FGDIRLGQGKENVKVRLETEVELLEKIEEEVKKAIKSEKKEEIETEKPEAKE 355


>gi|325295642|ref|YP_004282156.1| Protein recA [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325066090|gb|ADY74097.1| Protein recA [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 334

 Score =  328 bits (840), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 190/328 (57%), Positives = 252/328 (76%), Gaps = 5/328 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ + LE AL +I++ +G+G++M LG + +  E I  +S+GS+ +D A GIGG P+GRI 
Sbjct: 4   ERRRVLEDALRRIKKEFGEGSVMFLGEKPA--EEIPAISTGSISIDRATGIGGIPRGRIT 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTLALH IA  QK GG  AF+DAEHALD  YARKLG++L+ LL+SQPD+G
Sbjct: 62  EIYGPESSGKTTLALHVIANVQKEGGIAAFIDAEHALDPTYARKLGINLEELLVSQPDSG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVD+IV+DSVAAL P AEI+GDMG+S  G+QARLMSQALRKLT++ 
Sbjct: 122 EQALEIAETLVRSGAVDVIVVDSVAALVPEAEIKGDMGDSHVGLQARLMSQALRKLTAAT 181

Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIK-DKDSITG 247
           SRS C L+FINQ+R KIG+M      ETTTGG ALKFY+S+R+DIR +G IK   D   G
Sbjct: 182 SRSNCALIFINQVREKIGMMGYGGPQETTTGGRALKFYASMRMDIRNIGQIKGKGDERIG 241

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           ++ ++K+VKNK+A PF++   +I YGEGIS   +L++LG +   V KSG+W+S+   RLG
Sbjct: 242 HKAKIKIVKNKLAPPFREAIVEIYYGEGISKEADLLNLGEELGFVKKSGSWYSYGDIRLG 301

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNA 335
           QG+EN++IFL+EN EIA  +E+ + +  
Sbjct: 302 QGKENARIFLKENPEIAVELEAKIMEAF 329


>gi|319790642|ref|YP_004152275.1| recA protein [Thermovibrio ammonificans HB-1]
 gi|317115144|gb|ADU97634.1| recA protein [Thermovibrio ammonificans HB-1]
          Length = 351

 Score =  328 bits (840), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 189/347 (54%), Positives = 260/347 (74%), Gaps = 6/347 (1%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           + + +  +K K LE+A+ +I++ +G+GAIM+LG      E +  +S+GS+ +D   GIGG
Sbjct: 8   QNQPSKEEKLKVLESAIKRIKKEFGEGAIMRLGETP--VERVPAISTGSISVDRITGIGG 65

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P+GRI EI+GPE+SGKTTLALH I+ +QK GG  AF+DAEH  D  YAR LG++L+ LL
Sbjct: 66  VPRGRITEIFGPEASGKTTLALHVISNAQKEGGVAAFIDAEHTFDPTYARNLGINLEELL 125

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPD+GEQALEI + LVRSGAVD+IVIDSVAALTP AE++GDMG+S  G+QARLMSQAL
Sbjct: 126 LSQPDSGEQALEIAETLVRSGAVDVIVIDSVAALTPEAELKGDMGDSHVGLQARLMSQAL 185

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           RKLT+++S+SKC L+FINQ+R KIG+M      ETTTGG ALKFY+S+R+DIR +G IK 
Sbjct: 186 RKLTAAVSKSKCALIFINQVREKIGMMGYGGPQETTTGGRALKFYASMRMDIRNIGQIKG 245

Query: 242 KDSI-TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           ++    G++ +VK+VKNK+A PF++   +I YGEGIS   +L++LG +  I+ +SG+WFS
Sbjct: 246 RNDERIGHKAKVKIVKNKLAPPFREAVVEIYYGEGISKEADLLNLGEELGIIKRSGSWFS 305

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           F   +LGQG+EN++ FL+EN EIA+ IE  + +  G   D     P+
Sbjct: 306 FDNVKLGQGKENARQFLKENPEIAQEIEKRILEALG-AEDRAEAAPS 351


>gi|29565993|ref|NP_817564.1| gp117 [Mycobacterium phage Cjw1]
 gi|109302868|ref|YP_654870.1| gp117 [Mycobacterium phage 244]
 gi|194303408|ref|YP_002014433.1| gp114 [Mycobacterium phage Porky]
 gi|29424718|gb|AAN01729.1| gp117 [Mycobacterium phage Cjw1]
 gi|88910159|gb|ABD58090.1| gp117 [Mycobacterium phage 244]
 gi|194150893|gb|ACF33929.1| gp114 [Mycobacterium phage Porky]
 gi|255928432|gb|ACU42048.1| gp116 [Mycobacterium phage Pumpkin]
          Length = 320

 Score =  328 bits (840), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 171/319 (53%), Positives = 242/319 (75%), Gaps = 4/319 (1%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           +L+ AL+++ + +G G+ M+LG +    + ++V+ +GS+ LD ALGIGG+P+GR+VEIYG
Sbjct: 2   SLKEALAEVDKRFGAGSAMKLGDKP---QTVDVIPTGSIALDGALGIGGYPRGRVVEIYG 58

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGK+TL LH +A +QK GG  A++DAEH+LD  YA+ LGVDL NL++ QPDTGEQAL
Sbjct: 59  PESSGKSTLCLHAVANAQKAGGNAAYIDAEHSLDPEYAKALGVDLDNLVVVQPDTGEQAL 118

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EI D+LV+SG + I+V+DSVAAL PRAE+EGD+G+S  G+ ARLMSQA+RKLT +IS + 
Sbjct: 119 EIVDLLVKSGELSIVVVDSVAALVPRAELEGDIGDSHVGLHARLMSQAMRKLTGTISSTN 178

Query: 195 CILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            + +++NQ+R KI  V +G  ETTTGG AL+FY+SVR+D+RR+ + K+ D   GN+TRVK
Sbjct: 179 TLTLWVNQLREKIGNVGYGPNETTTGGKALRFYASVRMDVRRIATEKEGDEAVGNRTRVK 238

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VVKNK+A P +  EF ++YGEGIS   EL+DL V   +V KSGAWF +  + + QG+  +
Sbjct: 239 VVKNKLAPPHRNAEFSVVYGEGISREVELLDLAVSQGLVKKSGAWFKYGDKNVAQGKPKA 298

Query: 314 KIFLRENIEIAENIESLLR 332
             +L+ N +I ++IE  +R
Sbjct: 299 VQWLKANPDITDSIEQAIR 317


>gi|300172949|ref|YP_003772115.1| RecA protein [Leuconostoc gasicomitatum LMG 18811]
 gi|299887328|emb|CBL91296.1| RecA protein [Leuconostoc gasicomitatum LMG 18811]
          Length = 381

 Score =  328 bits (840), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 197/353 (55%), Positives = 257/353 (72%), Gaps = 4/353 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL +I++ +GKG++M LG        IE   SGS+ LD+ALG+GG+PKGRI+E
Sbjct: 19  RKTALDEALKKIEKNFGKGSVMFLGENT--LTQIETYPSGSVKLDVALGVGGYPKGRIIE 76

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  YA  LGV    LL+SQPDTGE
Sbjct: 77  VYGPESSGKTTIALHAVAEVQKAGGTAAYIDAENALDVKYAEALGVQKDELLLSQPDTGE 136

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q LEI D LV+SGAVDIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL  +++
Sbjct: 137 QGLEIADALVQSGAVDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGTLN 196

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           R+  I +FINQ+R KIGVMFG+PETT GG ALKFYS++RL++RR   IKD   +TGN T+
Sbjct: 197 RTGTIAIFINQIREKIGVMFGNPETTPGGRALKFYSTIRLEVRRSTQIKDGTDVTGNLTK 256

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PFK  E DIMYG+GIS  GE++DLG +  I+ K+GA++ +   ++GQGRE
Sbjct: 257 VKVVKNKVAPPFKVAEVDIMYGKGISQTGEILDLGAEQEIIRKAGAFYYYNDIKIGQGRE 316

Query: 312 NSKIFLR--ENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
            +K FL   EN E+ + I   +R   G+       + + N      + +T N+
Sbjct: 317 KAKEFLDAPENAEMRQEIYVKVRNAFGIGDGETSADESTNDDISDSEPETLNL 369


>gi|308237911|emb|CBK52102.1| RecA protein [Acidithiobacillus ferrooxidans]
          Length = 280

 Score =  328 bits (840), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 206/280 (73%), Positives = 247/280 (88%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLD+ALG+GG P+GR+VEIYGPESSGKTTL LH IA  Q  GGT AF+DAEHALD
Sbjct: 1   STGSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLTLHAIASCQAAGGTAAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
             YA KLGVDL+NLLISQPDTGEQALEI DMLVRSGAVD+IVIDSVAALTP+AEIEGDMG
Sbjct: 61  PGYAHKLGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGDMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRKLT++ISR+  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+S
Sbjct: 121 DSHVGLQARLMSQALRKLTANISRTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           VRLDIRR+G+IK  D + GN TRVKVVKNK+A PF++ EF I YGEGIS   EL+DLGVK
Sbjct: 181 VRLDIRRIGAIKKSDEVVGNDTRVKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVK 240

Query: 289 ASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
             IV+KSGAW+S++G+R+GQG++N++ +L+E+ E+A NIE
Sbjct: 241 FDIVEKSGAWYSYQGERIGQGKDNARQYLKEHPELAANIE 280


>gi|237736319|ref|ZP_04566800.1| RecA protein [Fusobacterium mortiferum ATCC 9817]
 gi|229421667|gb|EEO36714.1| RecA protein [Fusobacterium mortiferum ATCC 9817]
          Length = 359

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 195/354 (55%), Positives = 261/354 (73%), Gaps = 4/354 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   K+  + D+ KALE A+ QI++ +G+G+IM+LGS  S+   +E +S+GS+ LD+ALG
Sbjct: 1   MAKAKD-EVNDREKALEMAMKQIKKDFGEGSIMKLGSNQSM--AVETISTGSINLDLALG 57

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG P+GRIVEIYG ESSGKTT+ALH  A++QK GG  AF+DAEHALD +YA+ LGVD+ 
Sbjct: 58  QGGVPRGRIVEIYGAESSGKTTIALHIAAEAQKMGGIVAFIDAEHALDPVYAKALGVDVD 117

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LLISQPD GEQALEI DMLVRSGAVD++V+DSVAAL P+AEI+G+M +   G+QARLMS
Sbjct: 118 ELLISQPDYGEQALEIADMLVRSGAVDLVVVDSVAALVPKAEIDGEMSDQQMGLQARLMS 177

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           +ALRKLT+++++SK  ++FINQ+R KIG   FG   TTTGG ALKFY+SVR++++RVGS+
Sbjct: 178 KALRKLTATLNKSKTTMIFINQIRDKIGGFGFGPQTTTTGGKALKFYASVRMEVKRVGSV 237

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           K  D   GN+T VK+ KNK+A PFK+  F IMYG+GIS  GE++D+ ++  IV KSGAWF
Sbjct: 238 KQGDEAIGNETVVKITKNKIAPPFKEAAFQIMYGKGISRVGEILDMAIEYDIVAKSGAWF 297

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           SF   RLGQG+EN K  L    E+   IE+ + +     +     E  ++   +
Sbjct: 298 SFGDIRLGQGKENVKARLESEPELLAAIEAEVMKVMKPHSAKDETEEEVSVVPE 351


>gi|283768312|ref|ZP_06341224.1| RecA protein [Bulleidia extructa W1219]
 gi|283104704|gb|EFC06076.1| RecA protein [Bulleidia extructa W1219]
          Length = 346

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 181/336 (53%), Positives = 257/336 (76%), Gaps = 3/336 (0%)

Query: 1   MDYRKE-MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIAL 59
           M  +K  M    K   L+ AL  I++ YGKG+IM+LG +  +   I+ + SGSL LD AL
Sbjct: 1   MAEKKAVMTEHKKDVLLQEALKTIEKEYGKGSIMRLGDRADV--SIDAIPSGSLALDKAL 58

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           GIGG+PKGRI+EIYGPESSGKTTLALH IA+ QK GG CAF+DAE+A+D  YA KLGVD+
Sbjct: 59  GIGGYPKGRIIEIYGPESSGKTTLALHAIAECQKQGGCCAFIDAENAIDPQYAAKLGVDI 118

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
           + L++SQPD+GEQALEIT++L++SG +D++VIDSVAAL P+AE++G+MG++  G+QARLM
Sbjct: 119 EKLILSQPDSGEQALEITEILIKSGGIDLVVIDSVAALVPQAELDGEMGDASVGLQARLM 178

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           S+A+RKL  +++RS    +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+R+  ++
Sbjct: 179 SKAMRKLAGAMNRSNTTAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRKGEAL 238

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           K    + G+ T++KVVKNK+A PFK    ++++GEGIS   E+I+L V+  I+DK+GAWF
Sbjct: 239 KSGADVVGSATKIKVVKNKVAPPFKVAIVNMIFGEGISHVDEIINLAVEYDIIDKAGAWF 298

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
           S++G+++GQG    + FL+ + E+   I + +++  
Sbjct: 299 SYEGEKIGQGFNAVRDFLKSSPEMEAQISAQVKEKL 334


>gi|145219155|ref|YP_001129864.1| recombinase A [Prosthecochloris vibrioformis DSM 265]
 gi|145205319|gb|ABP36362.1| recA protein [Chlorobium phaeovibrioides DSM 265]
          Length = 349

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 199/331 (60%), Positives = 261/331 (78%), Gaps = 3/331 (0%)

Query: 4   RKEMNIVD--KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
            K++  +D  K K L+ A+  +++ +GKGAIM+LG   ++ + ++ +S+GS+ LD ALG+
Sbjct: 8   EKKVPGIDPAKLKQLDLAVDSLEKQFGKGAIMRLGDDSAVMQ-VQAISTGSMTLDFALGV 66

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GR+ EIYGPESSGKTTLALH IA++QK GG  A VDAEHA D  YAR+LGVD+  
Sbjct: 67  GGLPRGRVTEIYGPESSGKTTLALHVIAEAQKAGGIAAIVDAEHAFDPSYARRLGVDINA 126

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLISQP++GEQAL I + LVRSGAVD++ +DSVAAL P+AE+EG+MG+++ G+QARLMSQ
Sbjct: 127 LLISQPESGEQALSIVETLVRSGAVDVVAVDSVAALVPQAELEGEMGDTVVGLQARLMSQ 186

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT +IS+S C  +FINQ+R KIGVM+GSPETTTGG ALKFYSS+RLDIRR+  +KD
Sbjct: 187 ALRKLTGAISKSSCSCIFINQLRDKIGVMYGSPETTTGGKALKFYSSIRLDIRRIAQLKD 246

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            D+I GN+T+VKVVKNK+A PF+  EFDI+YGEGIS  GELIDL V+  +V K+G+WFS+
Sbjct: 247 GDAIIGNRTKVKVVKNKVAPPFRIAEFDILYGEGISMLGELIDLAVEFGVVKKAGSWFSY 306

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLR 332
              +LGQGRE  K  L E+ E+ E +   +R
Sbjct: 307 GPDKLGQGREAVKKALGEDRELFEKVHGQVR 337


>gi|148270072|ref|YP_001244532.1| recombinase A [Thermotoga petrophila RKU-1]
 gi|166220691|sp|A5IL83|RECA_THEP1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|147735616|gb|ABQ46956.1| RecA protein [Thermotoga petrophila RKU-1]
          Length = 356

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 193/349 (55%), Positives = 259/349 (74%), Gaps = 6/349 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K   LE AL +I+  +GKG+IM LG +  + + +EV+ +GSL +DIA G+GG+P+GRIVE
Sbjct: 7   KKSVLEKALKRIEENFGKGSIMILGDETQV-QPVEVIPTGSLAIDIATGVGGYPRGRIVE 65

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+G ESSGKTTLALH IA++QK GG  AF+DAEHALD +YA+ LGVDLK+LLISQPD GE
Sbjct: 66  IFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGE 125

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSG VD+IV+DSVAAL PRAEIEG MG+   G+QARLMSQALRK+  S++
Sbjct: 126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVN 185

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +SK +++F NQ+RMKIGVMFGSPETTTGG ALKFY+++R+++RR   IK+   + GN   
Sbjct: 186 KSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRRGEPIKEGKDVIGNVIS 245

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF---KGQR--L 306
           VK+VKNK+A PFK  +  I+YG+GI    EL ++ V+ S+V++ G+W+ +   KG+   L
Sbjct: 246 VKIVKNKVAPPFKTAQTYIIYGKGIDREYELFNIAVEESMVERKGSWYYYTTLKGEEVSL 305

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           GQG  N+  FL++N EIA  IE  +R+  GL++    ++       D +
Sbjct: 306 GQGSSNAVQFLKDNPEIAGEIERRIREKYGLLSVEKEEQKKEEKSSDEE 354


>gi|296803004|gb|ADH51578.1| DNA recombinase [Burkholderia cepacia]
          Length = 287

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 209/286 (73%), Positives = 253/286 (88%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 2   EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFID 61

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AE
Sbjct: 62  AEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAE 121

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           IEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNA
Sbjct: 122 IEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNA 181

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+
Sbjct: 182 LKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEI 241

Query: 283 IDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE
Sbjct: 242 IDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 287


>gi|313677460|ref|YP_004055456.1| reca protein [Marivirga tractuosa DSM 4126]
 gi|312944158|gb|ADR23348.1| recA protein [Marivirga tractuosa DSM 4126]
          Length = 343

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 199/330 (60%), Positives = 260/330 (78%), Gaps = 3/330 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
              +K KAL+  + ++ + YGKG++M+L  +  +   +  + +GSLGLDIALGIGG P+G
Sbjct: 3   EKSEKLKALQLTIDKLDKTYGKGSVMKLSDEKVV--DVPSIHTGSLGLDIALGIGGIPRG 60

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R++E+YGPESSGKTTLA+H IA++QK GG  A +DAEHA D  YA KLG+D +NLLISQP
Sbjct: 61  RVIEVYGPESSGKTTLAMHCIAEAQKAGGMAAIIDAEHAFDKAYAEKLGIDTENLLISQP 120

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D+GEQALEI + L+RSGA+DI+VIDSVAAL P+ E+EG+MG+S  G+QARLMSQALRKLT
Sbjct: 121 DSGEQALEIAEHLIRSGALDIVVIDSVAALVPKGELEGEMGDSKMGLQARLMSQALRKLT 180

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT- 246
            +IS++ C  +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+      
Sbjct: 181 GAISKTGCSCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGPDNIT 240

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ +VKVVKNKMA PFK VEFDIMYGEGIS  GE+IDLGV+  ++ K+G+WFS+   +L
Sbjct: 241 GNRVKVKVVKNKMAPPFKVVEFDIMYGEGISKVGEIIDLGVELEVIKKAGSWFSYMDNKL 300

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAG 336
           GQGR++ K  + +N E+ E +E+ +R    
Sbjct: 301 GQGRDSVKSLILDNPELMEELETKIRAKIN 330


>gi|71089124|gb|AAZ23640.1| RecA [uncultured Burkholderia sp.]
          Length = 288

 Score =  327 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 206/289 (71%), Positives = 253/289 (87%), Gaps = 1/289 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG++M+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSVMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +A+ QK GGT AF+DAEHALD  YA KLGVD+  LL+SQPDTGEQALEI D LVR
Sbjct: 60  LTLQVVAEMQKLGGTAAFIDAEHALDIQYAAKLGVDVSELLVSQPDTGEQALEIADALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQG++
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQGKD 288


>gi|148879027|emb|CAM07029.1| RecA protein [Mycobacterium sp. MHSD11]
          Length = 289

 Score =  326 bits (836), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 190/290 (65%), Positives = 242/290 (83%), Gaps = 2/290 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG +  + + I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q  
Sbjct: 1   LGEE--VRQPISVIPTGSISLDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAA 58

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTGEQALEI DMLVRSGA+DI+VIDSV
Sbjct: 59  GGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDILVIDSV 118

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AAL PRAEIEG+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFGSP
Sbjct: 119 AALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSP 178

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           ETTTGG ALKFY+SVRLD+RR+ ++KD     GN+TRVKVVKNK++ PFKQ EFDI+YG+
Sbjct: 179 ETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGQ 238

Query: 275 GISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           GIS  G LID+GV+   + KSG+WF+++G++LGQG+EN++ FL EN+++A
Sbjct: 239 GISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGKENARKFLLENVDVA 288


>gi|66819313|ref|XP_643316.1| recombinase A [Dictyostelium discoideum AX4]
 gi|122063512|sp|Q75JL2|RECAM_DICDI RecName: Full=Mitochondrial DNA repair protein recA homolog;
           AltName: Full=Recombinase A homolog
 gi|60471376|gb|EAL69336.1| recombinase A [Dictyostelium discoideum AX4]
 gi|76563897|tpd|FAA00018.1| TPA: RecA [Dictyostelium discoideum]
          Length = 452

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 192/350 (54%), Positives = 258/350 (73%), Gaps = 10/350 (2%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           +E  L ++++ +GKG +M+LGSQ S  + +EV+ SGS+GLDIALG+GG PKGR+ EI+GP
Sbjct: 90  MENVLKELEKSFGKGTLMKLGSQFST-QKVEVIPSGSMGLDIALGVGGLPKGRVTEIFGP 148

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLALH IAQ+QK GG C F+DAEHAL+  +A +LGV+L  L +SQPD GEQALE
Sbjct: 149 ESSGKTTLALHVIAQAQKAGGNCTFIDAEHALNPQWAARLGVNLDELFVSQPDNGEQALE 208

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L+RS  + +IV+DSVAAL PR EIEG+MG+S  G+QARLMSQALRKL+ ++  S C
Sbjct: 209 IVDSLLRSKTMSVIVVDSVAALVPRVEIEGEMGDSHLGVQARLMSQALRKLSPTLKDSNC 268

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           +L+FINQ+RMKIGVMFG+PE T+GGNALKF+SS+R+DIR+VG++K  D I  +Q + KVV
Sbjct: 269 VLIFINQIRMKIGVMFGNPEVTSGGNALKFFSSIRIDIRKVGTVKKGDDIIASQVKAKVV 328

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK+A PFK+  FDI +  GI+  GE+IDL V   I+DK G+W+S+   +L QGRE +K 
Sbjct: 329 KNKLAPPFKEAIFDIDFQSGINKTGEIIDLAVAEGIIDKMGSWYSYNDIKLDQGREKTK- 387

Query: 316 FLREN--IEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           +L E     +   IE+ LR         +  +P IN + + + +D  + E
Sbjct: 388 YLLEKTQPNLLVEIENKLRDKL------IKSKPLINQQQEEEGNDQTSDE 431


>gi|296122799|ref|YP_003630577.1| recA protein [Planctomyces limnophilus DSM 3776]
 gi|296015139|gb|ADG68378.1| recA protein [Planctomyces limnophilus DSM 3776]
          Length = 352

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 183/333 (54%), Positives = 260/333 (78%), Gaps = 5/333 (1%)

Query: 3   YRKEMNIVDKS--KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
            +K    V++   K L+  L QI++ +G+G+IM+L   G     ++ + SG+L LD+ALG
Sbjct: 8   DKKSAAEVEREHVKLLDNTLGQIEKAFGRGSIMKLTDAG---MDVDGIGSGALSLDLALG 64

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
             GFP+GRIVEI+GPESSGKTTLALH IA SQ+ GG  AF+DAEHALD  +A+KLGV+L+
Sbjct: 65  GKGFPRGRIVEIFGPESSGKTTLALHCIANSQREGGIAAFIDAEHALDPAWAKKLGVNLE 124

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQP TGE+AL+I +ML++S AVD++VIDSVAAL P+AE+EG++G+S  G+QAR+MS
Sbjct: 125 ELLVSQPSTGEEALQIAEMLIKSNAVDVVVIDSVAALVPKAELEGEIGDSHVGLQARMMS 184

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QA+RKLT  IS++K +++FINQ+R KIGVMFGSPETT GG ALKFY SVR D+RR+ ++K
Sbjct: 185 QAMRKLTGVISKAKTVVIFINQIREKIGVMFGSPETTPGGRALKFYCSVRADVRRLATLK 244

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           + D  TG + +VK+VKNK+A PF+  EFD++  +GISF G+L+DLGV A +V++SG+WF+
Sbjct: 245 EGDVTTGMRMKVKIVKNKVAPPFRVAEFDMLSSQGISFSGDLLDLGVAARLVERSGSWFT 304

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           +   +LGQGR+ ++I+L E+ E+   I++ + +
Sbjct: 305 YGEVKLGQGRDKARIYLEEHPELMAEIKAKVLE 337


>gi|29119659|emb|CAD79373.1| RecA protein [Burkholderia sacchari]
          Length = 301

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 215/302 (71%), Positives = 262/302 (86%), Gaps = 1/302 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRLGD-GEAVEDIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 120 TGEQALEITDALVRSGSIDMIVIDSVAALVPXAEIEGEMGDSLPGLQARLMSQALRKLTX 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I ++ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIR +GSIK  D + G+
Sbjct: 180 TIKKTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRXIGSIKKNDEVIGS 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQ
Sbjct: 240 ETRVKVVKNKVSPPFREAVFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQ 299

Query: 309 GR 310
           G+
Sbjct: 300 GK 301


>gi|308237899|emb|CBK52096.1| RecA protein [Acidithiobacillus ferrooxidans]
          Length = 279

 Score =  326 bits (835), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 205/279 (73%), Positives = 246/279 (88%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GSLGLD+ALG+GG P+GR+VEIYGPESSGKTTL LH IA  Q  GGT AF+DAEHALD 
Sbjct: 1   TGSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLTLHAIASCQAAGGTAAFIDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
            YA KLGVDL+NLLISQPDTGEQALEI DMLVRSGAVD+IVIDSVAALTP+AEIEGDMG+
Sbjct: 61  GYAHKLGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGDMGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           S  G+QARLMSQALRKLT++ISR+  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SV
Sbjct: 121 SHVGLQARLMSQALRKLTANISRTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
           RLDIRR+G+IK  D + GN TRVKVVKNK+A PF++ EF I YGEGIS   EL+DLGVK 
Sbjct: 181 RLDIRRIGAIKKSDEVVGNDTRVKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVKF 240

Query: 290 SIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
            IV+KSGAW+S++G+R+GQG++N++ +L+E+ E+A NIE
Sbjct: 241 DIVEKSGAWYSYQGERIGQGKDNARQYLKEHPELAANIE 279


>gi|297622935|ref|YP_003704369.1| recA protein [Truepera radiovictrix DSM 17093]
 gi|297164115|gb|ADI13826.1| recA protein [Truepera radiovictrix DSM 17093]
          Length = 359

 Score =  326 bits (835), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 179/320 (55%), Positives = 248/320 (77%), Gaps = 1/320 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + ++LE+ LSQI++ +GKGAIM+LG   S+ +   V+ +GS+ +D+ALG+GG P+GRI+E
Sbjct: 19  RRRSLESTLSQIEKQFGKGAIMRLGDDRSLLDQ-GVIPTGSMSVDLALGVGGVPRGRIIE 77

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPES GKTTL+LH IA++Q+ GG  AFVDAEHALD  YA+ LGVD   LL+SQPDTGE
Sbjct: 78  IYGPESGGKTTLSLHVIAEAQRLGGVAAFVDAEHALDPTYAKALGVDTDELLVSQPDTGE 137

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEIT++LVRSGAVD++V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKLT +++
Sbjct: 138 QALEITELLVRSGAVDVVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTGALA 197

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S+   +FINQ+R KIGVM+G+PETT GG ALKFY+SVRL++RR G +K      GNQ R
Sbjct: 198 KSRTTAIFINQIREKIGVMYGNPETTPGGRALKFYASVRLEVRRKGDVKSGADKVGNQVR 257

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV KNK+A PFK+ E +I++G+GI   G+LI +     ++ KSG+++ + G  +GQG+E
Sbjct: 258 VKVTKNKVAPPFKEAEVEILFGKGIDKLGDLITIATDLDLIQKSGSFYKYDGVTIGQGKE 317

Query: 312 NSKIFLRENIEIAENIESLL 331
            +  +L +N  + + +   +
Sbjct: 318 KAASYLLDNPHLIDALRQRV 337


>gi|329667688|gb|AEB93636.1| RecA protein [Lactobacillus johnsonii DPC 6026]
          Length = 334

 Score =  326 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 181/334 (54%), Positives = 251/334 (75%), Gaps = 7/334 (2%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M++G +  +   I  + SGSL LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ Q
Sbjct: 1   MRMGEK--VDTQISTIPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGT A++DAE+A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+D
Sbjct: 59  KRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVD 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL PRAEI+GDMG+S  G+QARLMSQALRKL+ +IS++K I VFINQ+R K+GVMFG
Sbjct: 119 SVAALVPRAEIDGDMGDSHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETT GG ALKFYS++RL++RR   IK    + GN+ ++KVVKNK+A PFK  E DIMY
Sbjct: 179 NPETTPGGRALKFYSTIRLEVRRAEQIKQGSDVIGNRVKLKVVKNKVAPPFKVAEVDIMY 238

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           G+GIS  GELID+     I+ K+G+W+S+   R+GQGREN+K +L E+ ++ E ++  +R
Sbjct: 239 GKGISQTGELIDMAADKDIIKKAGSWYSYGDDRIGQGRENAKQYLEEHPDVYEEVKEKVR 298

Query: 333 QNAGLVADSLLQ-EPAINTKDDAD----KDDTDN 361
           +  G+ A ++ + E     K D +    KD +D 
Sbjct: 299 EAYGIDAKAIEERENPEKVKQDKEVPVNKDASDE 332


>gi|297622180|ref|YP_003710317.1| bacterial DNA recombination protein recA [Waddlia chondrophila WSU
           86-1044]
 gi|297377481|gb|ADI39311.1| bacterial DNA recombination protein recA [Waddlia chondrophila WSU
           86-1044]
          Length = 350

 Score =  326 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 197/345 (57%), Positives = 261/345 (75%), Gaps = 2/345 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            ++ KAL+ A+S I++ +G+GAIM LGS+ S  E I V+ +G+L LD+ALGIGG P+GRI
Sbjct: 7   SERKKALDLAVSHIKKQFGEGAIMSLGSRASQQE-IGVIKTGTLALDVALGIGGVPRGRI 65

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGK+TLALH +A +QK+GG  A++DAEHALD  YA K+GV+++ LLISQPD 
Sbjct: 66  VEIYGPESSGKSTLALHIVANAQKSGGLAAYIDAEHALDPSYATKIGVNIEELLISQPDC 125

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GE+AL I + L RS AVD+I+IDSVAAL P++E+EG++G+S  G+QAR+MSQALRKLT++
Sbjct: 126 GEEALNIAETLARSNAVDVIIIDSVAALVPKSELEGEIGDSFVGLQARMMSQALRKLTAT 185

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSITGN 248
           ++RS    VFINQ+R KIGVM+G+PETTTGG ALKFYSSVR++IRR G IK   ++  GN
Sbjct: 186 LARSNTCAVFINQIREKIGVMYGNPETTTGGRALKFYSSVRMEIRRTGGIKGPDNNEMGN 245

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + +VKVVKNKMA PF+  EFDI++ EGIS  G +ID+  +  I+DK GAWFS+KG RLGQ
Sbjct: 246 RVKVKVVKNKMAPPFRAAEFDILFNEGISRTGSVIDMATEYQIIDKRGAWFSYKGDRLGQ 305

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           GRE  +  L+ N ++ E IE  + +   L  +   QE      D 
Sbjct: 306 GREAVREQLKANKDLLEEIEKQVIEKYQLKLNPQPQEMESAQADS 350


>gi|170017614|ref|YP_001728533.1| hypothetical protein LCK_01264 [Leuconostoc citreum KM20]
 gi|169804471|gb|ACA83089.1| RecA [Leuconostoc citreum KM20]
          Length = 381

 Score =  326 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 198/353 (56%), Positives = 256/353 (72%), Gaps = 5/353 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL +I++ +GKG++M LG        IE   SGS+ LD+ALG+GG+PKGRI+E
Sbjct: 19  RKAALDEALKKIEKNFGKGSVMVLGDNA--LTQIETYPSGSVKLDVALGVGGYPKGRIIE 76

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH +A+ QK GGT A++DAE+ALD  YA  LGV    LL+SQPDTGE
Sbjct: 77  IYGPESSGKTTLALHAVAEVQKAGGTAAYIDAENALDVKYAEALGVQKDELLLSQPDTGE 136

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q LEI D LV+SGAVDIIV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL  +++
Sbjct: 137 QGLEIADALVQSGAVDIIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGTLN 196

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           R+  I +FINQ+R KIGVMFG+PETT GG ALKFYS++RL++RR   IKD   +TGN T+
Sbjct: 197 RTGTIAIFINQIREKIGVMFGNPETTPGGRALKFYSTIRLEVRRSTQIKDGTDVTGNLTK 256

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PFK  E DIMYG+G+S  GE++DLG +  I+ K+GA++ +   ++GQGRE
Sbjct: 257 VKVVKNKVAPPFKVAEIDIMYGKGVSQTGEILDLGAEQEIIRKAGAFYYYDDVKIGQGRE 316

Query: 312 NSKIFLR--ENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
            +K FL   EN ++ + I   +R   G+  D    E    T D     +T  +
Sbjct: 317 KAKEFLDDPENADMRQTIYEKVRNAFGI-GDGETAESDETTADKQKGSETIEL 368


>gi|281412047|ref|YP_003346126.1| recA protein [Thermotoga naphthophila RKU-10]
 gi|281373150|gb|ADA66712.1| recA protein [Thermotoga naphthophila RKU-10]
          Length = 356

 Score =  326 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 192/333 (57%), Positives = 255/333 (76%), Gaps = 6/333 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K   LE AL +I+  +GKG+IM LG +  + + +EV+ +GSL +DIA G+GG+P+GRIVE
Sbjct: 7   KKSVLEKALKRIEENFGKGSIMILGDETQV-QPVEVIPTGSLAIDIATGVGGYPRGRIVE 65

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+G ESSGKTTLALH IA++QK GG  AF+DAEHALD +YA+ LGVDLK+LLISQPD GE
Sbjct: 66  IFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGE 125

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSG VD+IV+DSVAAL PRAEIEG MG+   G+QARLMSQALRK+  S++
Sbjct: 126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVN 185

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +SK +++F NQ+RMKIGVMFGSPETTTGG ALKFY+++R+++RR   IK+   + GN   
Sbjct: 186 KSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRRGEPIKEGKDVIGNVIS 245

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF---KGQR--L 306
           VK+VKNK+A PFK  +  I+YG+GI    EL ++ V+ S+V++ G+W+ +   KG+   L
Sbjct: 246 VKIVKNKVAPPFKTAQTYIIYGKGIDREYELFNIAVEESMVERKGSWYYYTTLKGEEVSL 305

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           GQG  N+  FL++N EIA  IE  +R+  GL++
Sbjct: 306 GQGSSNAVQFLKDNPEIAGEIERRIREKYGLLS 338


>gi|294055627|ref|YP_003549285.1| recA protein [Coraliomargarita akajimensis DSM 45221]
 gi|293614960|gb|ADE55115.1| recA protein [Coraliomargarita akajimensis DSM 45221]
          Length = 357

 Score =  326 bits (834), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 183/350 (52%), Positives = 255/350 (72%), Gaps = 3/350 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           KE +     K L+ A+S I + +G GA+M+LG    +   ++ +S+GS+ +DIALG GG 
Sbjct: 10  KERSPESDRKNLDLAISGINKQFGPGALMRLGEAAQM--EVDTISTGSIAIDIALGTGGL 67

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GRI EIYGPESSGKTT  L  IAQ+QK GG   F+D EHALD  YA+ +GVDL NL++
Sbjct: 68  PRGRICEIYGPESSGKTTFCLSIIAQAQKQGGNAVFIDVEHALDPRYAKVVGVDLDNLMV 127

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQP++GE AL IT+ L+RSGAVDIIV+DSVAAL  + E++G MG++  G+QAR+MSQA+R
Sbjct: 128 SQPESGEDALNITETLIRSGAVDIIVVDSVAALVSKNELDGQMGDTTVGLQARMMSQAMR 187

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK-D 243
           +LT +I+++ C+++F NQ+R KIGVMFG+PET  GG ALKF+SSVR+DIRR+G IK+   
Sbjct: 188 RLTGAINKTNCVVLFTNQIREKIGVMFGNPETQPGGRALKFFSSVRMDIRRIGQIKESAG 247

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+TR+KVVKNK+A PF + EFDIMY EGIS  G L+DLGV+  I++K G+W S+KG
Sbjct: 248 KVVGNRTRLKVVKNKVAPPFTECEFDIMYNEGISHSGSLVDLGVEHKILEKKGSWVSYKG 307

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           + +GQGRE +K  + +N E+ + +  L+ +     A   L   +  T++ 
Sbjct: 308 EMIGQGREAAKQHIMDNPELGDELTKLIMEKVHPKAGESLTGASEATEES 357


>gi|132221|sp|P22841|RECA_BACFR RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|143963|gb|AAA22918.1| recA [Bacteroides fragilis]
 gi|301162249|emb|CBW21794.1| recombinase A (recA) [Bacteroides fragilis 638R]
          Length = 318

 Score =  326 bits (834), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 192/316 (60%), Positives = 252/316 (79%), Gaps = 2/316 (0%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           + +I++ +GKG+IM++G +        V+ +GS+ L+ ALG+GG+P+GRI+EIYGPESSG
Sbjct: 1   MDKIEKSFGKGSIMKMGEEVVEQVE--VIPTGSIALNAALGVGGYPRGRIIEIYGPESSG 58

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD GEQALEI + 
Sbjct: 59  KTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLFISQPDNGEQALEIAEQ 118

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           L+RS A+DIIV+DSVAALTP+AEIEGDMG++  G+QARLMSQALRKLTS++S+++   +F
Sbjct: 119 LIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTSAVSKTRTTCIF 178

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           INQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR    IKD + + G QT+VKVVKNK+
Sbjct: 179 INQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQQIKDGEEVIGKQTKVKVVKNKV 238

Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
           A PF++ EFDIM+GEGIS  GE+IDLG    I+ KSG+W+S+   +LGQGR+ +K  + +
Sbjct: 239 APPFRKAEFDIMFGEGISHSGEIIDLGADLGIIKKSGSWYSYNDTKLGQGRDAAKQCIAD 298

Query: 320 NIEIAENIESLLRQNA 335
           N E+AE +E L+ +  
Sbjct: 299 NPELAEELEGLIFEKL 314


>gi|306450657|gb|ADM88581.1| RecA [Propionibacterium acnes]
          Length = 293

 Score =  326 bits (834), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 192/292 (65%), Positives = 238/292 (81%), Gaps = 2/292 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+ KAL  AL QI++ +GKG+IM+LG Q ++   I  + +GS+ LD+ALG+GG P+GR
Sbjct: 4   TADREKALATALQQIEKQHGKGSIMRLGEQETV--KIAAIPTGSVALDVALGVGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEIYGPESSGKTT+ALH IA +Q  GG CAF+DAEHALD  YARKLGVD  +LL+SQPD
Sbjct: 62  IVEIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPEYARKLGVDTDSLLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GEQALEI D LVRSGA++++V+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T 
Sbjct: 122 NGEQALEIADTLVRSGALELVVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +++ +    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RRV ++KD   + GN
Sbjct: 182 ALNAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRVETLKDGSEMVGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           +TRVKV KNK+A PFKQ EFDI+YG+GIS  G LID+GV   I+ KSG+WFS
Sbjct: 242 RTRVKVAKNKVAPPFKQAEFDILYGQGISREGSLIDMGVDCGIITKSGSWFS 293


>gi|194303169|ref|YP_002014584.1| gp118 [Mycobacterium phage Kostya]
 gi|194153217|gb|ACF34283.1| gp118 [Mycobacterium phage Kostya]
          Length = 320

 Score =  326 bits (834), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 171/319 (53%), Positives = 243/319 (76%), Gaps = 4/319 (1%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           +L+ AL+++ + +G GA M LG++    + ++ + +GS+ LD ALGIGG+P+GR+VEIYG
Sbjct: 2   SLKDALAEVDKRFGAGAAMTLGAKP---QTVDTIPTGSIALDAALGIGGYPRGRVVEIYG 58

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGK+TL LH +A +QK GG  A++DAEH+LD  YA  LGVD+ NL++ QPDTGEQAL
Sbjct: 59  PESSGKSTLCLHAVANAQKAGGNAAYIDAEHSLDPEYAAALGVDVDNLVVVQPDTGEQAL 118

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EI D+LV+SG V IIV+DSVAAL PRAE+EGD+G+S  G+ ARLMSQA+RKLT +I+ + 
Sbjct: 119 EIVDLLVKSGEVSIIVVDSVAALVPRAELEGDIGDSHVGLHARLMSQAMRKLTGTIASTN 178

Query: 195 CILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            + +++NQ+R KI  V +G  ETTTGG AL+FY+SVR+D+RR+ + K+ D   GN+TRVK
Sbjct: 179 TLTLWVNQLREKIGNVGYGPNETTTGGKALRFYASVRMDVRRIATEKEGDEAVGNRTRVK 238

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VVKNK+A P +Q EF I+YGEGIS   EL+D+ V   ++ KSGAWF +  + +GQG+  +
Sbjct: 239 VVKNKLAPPHRQAEFSIVYGEGISREAELLDMAVSRGLIKKSGAWFKYGDKNIGQGKPKT 298

Query: 314 KIFLRENIEIAENIESLLR 332
             +L++N ++A +IE  ++
Sbjct: 299 VQWLKDNPDVAASIEQTIK 317


>gi|296803000|gb|ADH51576.1| DNA recombinase [Burkholderia cenocepacia]
          Length = 288

 Score =  326 bits (834), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 209/288 (72%), Positives = 252/288 (87%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99
              E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT A
Sbjct: 1   EAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAA 60

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P
Sbjct: 61  FIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVP 120

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           +AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTG
Sbjct: 121 KAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTG 180

Query: 220 GNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFF 279
           GNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  
Sbjct: 181 GNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQ 240

Query: 280 GELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  I
Sbjct: 241 GEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 288


>gi|269121570|ref|YP_003309747.1| recA protein [Sebaldella termitidis ATCC 33386]
 gi|268615448|gb|ACZ09816.1| recA protein [Sebaldella termitidis ATCC 33386]
          Length = 375

 Score =  326 bits (834), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 196/336 (58%), Positives = 257/336 (76%), Gaps = 7/336 (2%)

Query: 1   MDYRKEMN--IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIA 58
           M  +KE    + DK K ++ A+ QIQ+ YG+G+IM+LG    +   I+ +S+GSL LDIA
Sbjct: 1   MARKKEEAPQLNDKEKIIDLAMKQIQKEYGEGSIMKLGENQKM--NIKSISTGSLNLDIA 58

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG+GG P+GRI+EIYG ESSGKTTLA+H IA++QK GG   F+DAEHALD +YA+ LGV+
Sbjct: 59  LGVGGVPRGRIIEIYGAESSGKTTLAIHIIAEAQKLGGVAGFIDAEHALDPVYAKALGVN 118

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +  LLISQPDTGEQALEI DMLVRSGA+D+IVIDSVAAL P+AEIEG+MG+   G+QARL
Sbjct: 119 IDELLISQPDTGEQALEIADMLVRSGALDVIVIDSVAALVPKAEIEGEMGDQQMGLQARL 178

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVM---FGSPETTTGGNALKFYSSVRLDIRR 235
           MS+ALRKLT SIS+S  +++FINQ+R KIG      G   TT+GG ALKF+S+VR++++R
Sbjct: 179 MSKALRKLTGSISKSSTVMIFINQIREKIGGFSFVPGVQTTTSGGRALKFFSTVRMEVKR 238

Query: 236 VGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           +GSIK  D + GN+T VKV KNK++ PFK+  F+IMYG+GIS  GE++D+ +   IV KS
Sbjct: 239 IGSIKQGDEVIGNETLVKVTKNKVSPPFKEARFNIMYGKGISKIGEILDIAIDNGIVAKS 298

Query: 296 GAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLL 331
           GAWFS+  +RLGQGR N +  L EN E+   IE+ +
Sbjct: 299 GAWFSYGDERLGQGRVNVENSLAENTELLGRIETDV 334


>gi|46447629|ref|YP_008994.1| recombinase A [Candidatus Protochlamydia amoebophila UWE25]
 gi|46401270|emb|CAF24719.1| probable recombination protein recA [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 361

 Score =  326 bits (834), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 192/327 (58%), Positives = 254/327 (77%), Gaps = 2/327 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            ++ KAL  A+SQI++ +G+GAIM  G + S  + + V+ +G+L LDIALGIGG P+GR+
Sbjct: 9   SERKKALGLAVSQIKKQFGEGAIMSFG-KHSSEKEMSVIKTGALALDIALGIGGVPRGRV 67

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGK+TLALH +A +QK GG  A++DAEHALD  YA K+G+++ +L+ISQPD+
Sbjct: 68  VEIYGPESSGKSTLALHIVANAQKNGGLAAYIDAEHALDPSYAGKIGINIDDLMISQPDS 127

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GE+AL I +ML RS AVD+IVIDSVAAL P++E+EG++G+   G+QAR+MSQALRKLT+S
Sbjct: 128 GEEALNIAEMLARSNAVDVIVIDSVAALVPKSELEGEIGDQFMGLQARMMSQALRKLTAS 187

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI-TGN 248
           +S+S    +FINQ+R KIG+++G+PETTTGG ALKFYSSVRLDIRR G IK  D+   GN
Sbjct: 188 LSKSNTCAIFINQIRDKIGIVYGNPETTTGGRALKFYSSVRLDIRRTGGIKGPDNTEIGN 247

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + +VKV KNKMA PF+  EFDI++ EGIS  G  ID+  + +IVDK GAWFS+KGQRLGQ
Sbjct: 248 RVKVKVSKNKMAPPFQIAEFDILFNEGISRTGSAIDMATEYNIVDKKGAWFSYKGQRLGQ 307

Query: 309 GRENSKIFLRENIEIAENIESLLRQNA 335
           GRE  +   + N  + E IE+L+ Q  
Sbjct: 308 GREAVREEFKNNPTLLEEIEALILQQY 334


>gi|71089098|gb|AAZ23627.1| RecA [uncultured Burkholderia sp.]
          Length = 288

 Score =  325 bits (833), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 203/289 (70%), Positives = 254/289 (87%), Gaps = 1/289 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG++M+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSVMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +A+ QK GGT AF+DAEHALD  YA +LGV++ +LL+SQPDTGEQALEI D LVR
Sbjct: 60  LTLQVVAEMQKLGGTAAFIDAEHALDIQYAGELGVNVSDLLVSQPDTGEQALEIADALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQG++
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQGKD 288


>gi|325283285|ref|YP_004255826.1| Protein recA [Deinococcus proteolyticus MRP]
 gi|324315094|gb|ADY26209.1| Protein recA [Deinococcus proteolyticus MRP]
          Length = 371

 Score =  325 bits (833), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 190/357 (53%), Positives = 264/357 (73%), Gaps = 4/357 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +  ++ KA++ ALSQI++ +GKG+IM+LG++  +   ++ +S+GS+ LD+ALG+GG P+G
Sbjct: 15  DAKERQKAIDTALSQIEKQFGKGSIMKLGAESKL--DVQTISTGSMSLDLALGVGGVPRG 72

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R+ EIYGPES GKTTLAL  IAQ+QK GGT AF+DAEHALD +YAR LGV+   LL+SQP
Sbjct: 73  RVTEIYGPESGGKTTLALSIIAQAQKAGGTAAFIDAEHALDPVYARALGVNTDELLVSQP 132

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI ++LVRSGA+DI+V+DSVAALTP+AEIEGDMG+SLPG+QARLMSQALRKLT
Sbjct: 133 DNGEQALEIMELLVRSGAMDIVVVDSVAALTPKAEIEGDMGDSLPGLQARLMSQALRKLT 192

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS-IKDKDSIT 246
           S +S++    +FINQ+R KIGVM+G+PETTTGG ALKFYSSVRLD+R++G  IK  +   
Sbjct: 193 SILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYSSVRLDVRKIGQPIKVGNDAV 252

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
            N  +VK VKNK+A+PFK+VE  ++YG+G     +L+ L     I+ K+G+++S+   R+
Sbjct: 253 ANTVKVKTVKNKVAAPFKEVELALVYGKGFDQLNDLVTLASDMDIIKKAGSFYSYGDDRI 312

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           GQG+E +  ++ E  E+ + I + +  NA    +     PA + + D      +  E
Sbjct: 313 GQGKEKAMQYIAERPELEDEIRARV-LNAIRAGNQTDAAPARDAEADVPASPAEEAE 368


>gi|313585624|gb|ADR70954.1| recombinase A [Thermus filiformis]
          Length = 338

 Score =  325 bits (833), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 192/339 (56%), Positives = 256/339 (75%), Gaps = 2/339 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +K K+LE  L  I++ +GKGAIM+LG      + ++V+ +GSL LD+ALGIGG P+GR
Sbjct: 2   NEEKRKSLENTLKAIEKEFGKGAIMRLGEMPR--QQVDVIPTGSLALDLALGIGGIPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EIYGPES GKTTLAL  IAQ+QK GG  AFVDAEHALD  YA+KLGVD++NLL+SQPD
Sbjct: 60  VIEIYGPESGGKTTLALTIIAQAQKMGGLAAFVDAEHALDPTYAQKLGVDVENLLVSQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI ++L RSGAVD++V+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT+
Sbjct: 120 TGEQALEIVELLARSGAVDVVVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTA 179

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            +++S    +FINQ+R K+GVM+G+PETT GG ALKFYSSVRLD+RR G IK  +   G 
Sbjct: 180 VLAKSNTAAIFINQVREKVGVMYGNPETTPGGRALKFYSSVRLDVRRSGVIKQGNEAVGI 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + +VKVVKNK+A PF+Q E +I +G G+    +L+++ V A ++ KSG+W S+   RLGQ
Sbjct: 240 KVKVKVVKNKLAPPFRQAELEIYFGRGLDPLMDLVNVAVAAEVIQKSGSWLSYGETRLGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           GRE +  FL+E+  + E I + + + A  V  ++  E  
Sbjct: 300 GREKAADFLKEHPTLVEEIRARVLERASQVVLAVEGEEE 338


>gi|320527246|ref|ZP_08028432.1| protein RecA [Solobacterium moorei F0204]
 gi|320132437|gb|EFW24981.1| protein RecA [Solobacterium moorei F0204]
          Length = 350

 Score =  325 bits (833), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 180/346 (52%), Positives = 259/346 (74%), Gaps = 2/346 (0%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
            K +    + + L  AL  I++ YGKG+IM+LG +  +   ++ + SGSL LD ALGIGG
Sbjct: 7   EKTVTADKRDQLLADALKAIEKEYGKGSIMRLGDRADV--SVDAIPSGSLALDSALGIGG 64

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
           +PKGRI+EIYGPESSGKTTLALH IA+ QK GG CAF+DAE+A+D +YA+KLGVD+  L+
Sbjct: 65  YPKGRIIEIYGPESSGKTTLALHAIAECQKQGGRCAFIDAENAIDPLYAKKLGVDIDELI 124

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPD+GEQALEIT++L++SGA+D++VIDSVAAL P+AE++G+MG++  G+QARLMS+A+
Sbjct: 125 LSQPDSGEQALEITEVLIKSGAIDLVVIDSVAALVPQAELDGEMGDASVGLQARLMSKAM 184

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKL   ++RS    +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+R+  ++K+  
Sbjct: 185 RKLAGVMNRSNTTAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRKGEALKEGS 244

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + G+ T+VKVVKNK+A PFK    ++++G+GIS   E+I L V+  I++K+GAWFS+KG
Sbjct: 245 EVIGSATKVKVVKNKVAPPFKVAVVNMIFGQGISHIDEVISLAVENDIIEKAGAWFSYKG 304

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
           ++LGQG  + + +++ + E    I  L++       +S+  E    
Sbjct: 305 EKLGQGFNSVREYMKNHPEFDAEITELVKAKLFPTTESVSTEATAE 350


>gi|148879003|emb|CAM07017.1| RecA protein [Mycobacterium sp. MG11]
          Length = 288

 Score =  325 bits (833), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 190/290 (65%), Positives = 241/290 (83%), Gaps = 2/290 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q
Sbjct: 1   MRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
             GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTGEQALEI DMLVRSGA+ +IVID
Sbjct: 59  AAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAISLIVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFG
Sbjct: 119 SVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           SPETTTGG ALKFYSSVRLD+RR+ ++KD     GN+TRVKVVKNK++ PFKQ EFDI+Y
Sbjct: 179 SPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILY 238

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           G+GIS  G LID+GV+   + KSG+WF+++G++LGQG+EN++ FL EN++
Sbjct: 239 GKGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGKENARNFLLENVD 288


>gi|224551669|gb|ACN54234.1| RecA [Burkholderia arboris]
          Length = 298

 Score =  325 bits (833), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 209/290 (72%), Positives = 255/290 (87%), Gaps = 1/290 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 10  GSIMRMGD-GDATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 68

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 69  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 128

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 129 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 188

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 189 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 248

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLRE
Sbjct: 249 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRE 298


>gi|60492139|emb|CAH06902.1| recombinase A (recA) [Bacteroides fragilis NCTC 9343]
          Length = 318

 Score =  325 bits (833), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 192/316 (60%), Positives = 252/316 (79%), Gaps = 2/316 (0%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           + +I++ +GKG+IM++G +        V+ +GS+ L+ ALG+GG+P+GRI+EIYGPESSG
Sbjct: 1   MDKIEKSFGKGSIMKMGEEVVEQVE--VIPTGSIALNAALGVGGYPRGRIIEIYGPESSG 58

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD GEQALEI + 
Sbjct: 59  KTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLFISQPDNGEQALEIAEQ 118

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           L+RS A+DIIV+DSVAALTP+AEIEGDMG++  G+QARLMSQALRKLTS++S+++   +F
Sbjct: 119 LIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTSAVSKTRTTCIF 178

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           INQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR    IKD + + G QT+VKVVKNK+
Sbjct: 179 INQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQQIKDGEEVIGKQTKVKVVKNKV 238

Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
           A PF++ EFDIM+GEGIS  GE+IDLG    I+ KSG+W+S+   +LGQGR+ +K  + +
Sbjct: 239 APPFRKAEFDIMFGEGISHSGEIIDLGADLGIIKKSGSWYSYNDTKLGQGRDAAKQCIAD 298

Query: 320 NIEIAENIESLLRQNA 335
           N E+AE +E L+ +  
Sbjct: 299 NPELAEELEGLIFEKL 314


>gi|71725931|gb|AAZ39083.1| homologous recombination protein [Exiguobacterium aurantiacum]
          Length = 289

 Score =  325 bits (833), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 188/291 (64%), Positives = 237/291 (81%), Gaps = 2/291 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG      + + V  SGS+ LDIALG GG+P+GR++E+YGPESSGKTT+
Sbjct: 1   EKQFGKGSIMRLGENTD--QQVSVTPSGSIALDIALGAGGYPRGRVIEVYGPESSGKTTV 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALH IA+ QK GG  AFVDAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRS
Sbjct: 59  ALHAIAEVQKRGGQAAFVDAEHALDPKYAKNLGVNIDELLLSQPDTGEQALEIAEALVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVDI+V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ + ++SK I++FINQ+
Sbjct: 119 GAVDILVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGATNKSKTIVIFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           R KIG+MFG+PETT GG ALKFYSSVRL++RR  ++K    + GN+T++KVVKNK+A PF
Sbjct: 179 REKIGIMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGQDMVGNRTKIKVVKNKIAPPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           K  E DIMYGEGIS  GELID+G    IV KSGAW+S+  +RLGQGREN+K
Sbjct: 239 KTAEVDIMYGEGISREGELIDIGADLDIVQKSGAWYSYNEERLGQGRENAK 289


>gi|61097689|emb|CAI28921.1| recombinase A [Chromobacterium violaceum]
 gi|61097697|emb|CAI38693.1| recombinase A [Chromobacterium violaceum]
 gi|61097711|emb|CAI38700.1| recombinase A [Chromobacterium violaceum]
          Length = 285

 Score =  325 bits (832), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 191/286 (66%), Positives = 246/286 (86%), Gaps = 1/286 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++     I E ++V+S+GSL LD+ALG+GG P+GR+VEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRMSDNQ-ITENLQVISTGSLTLDLALGVGGLPRGRVVEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  +A++QK GGTCA++DAE+ALD +YA+KLGV++++LLISQPDTGEQALEI DMLV
Sbjct: 60  TLCLQAVAEAQKLGGTCAYIDAENALDPVYAQKLGVNVEDLLISQPDTGEQALEICDMLV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RS  VD+IV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT +I R+  +++FIN
Sbjct: 120 RSSGVDVIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRTNTLVIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G IK  D + GN TRVKVVKNK++ 
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGGIKKGDEVIGNDTRVKVVKNKVSP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           PF+Q +F+I+YGEGIS  GE+I+LGVK   +DKSGAW+++ GQ++G
Sbjct: 240 PFRQADFEILYGEGISRQGEIIELGVKHGFIDKSGAWYAYNGQKIG 285


>gi|61097691|emb|CAI38690.1| recombinase A [Chromobacterium violaceum]
 gi|61097701|emb|CAI38695.1| recombinase A [Chromobacterium pseudoviolaceum]
          Length = 285

 Score =  325 bits (832), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 190/286 (66%), Positives = 246/286 (86%), Gaps = 1/286 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++     I E ++V+S+GSL LD+ALG+GG P+GR+VEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRMSDNQ-ITENLQVISTGSLSLDLALGVGGLPRGRVVEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  +A++QK GGTCA++DAE+ALD +YA+KLGV++++LLISQPDTGEQALEI DMLV
Sbjct: 60  TLCLQVVAEAQKLGGTCAYIDAENALDPVYAQKLGVNVEDLLISQPDTGEQALEICDMLV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RS  VD+IV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT +I R+  +++FIN
Sbjct: 120 RSSGVDVIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRTNTLVIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G IK  + + GN TRVKVVKNK++ 
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGGIKKGEEVVGNDTRVKVVKNKVSP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           PF+Q +F+I+YGEGIS  GE+I+LGVK   +DKSGAW+++ GQ++G
Sbjct: 240 PFRQADFEILYGEGISRPGEIIELGVKHGFIDKSGAWYAYNGQKIG 285


>gi|301629465|ref|XP_002943860.1| PREDICTED: hypothetical protein LOC100489290 [Xenopus (Silurana)
           tropicalis]
          Length = 844

 Score =  325 bits (832), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 203/286 (70%), Positives = 248/286 (86%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           LGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGTCAFVDAEHALD  YA
Sbjct: 545 LGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTCAFVDAEHALDVQYA 604

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            KLGV+L +LLISQPDTGEQALEI D LVRSGAVD+IV+DSVAALTP+AEIEGDMG+ LP
Sbjct: 605 SKLGVNLPDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAALTPKAEIEGDMGDQLP 664

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QARLMSQALRKLT++I ++ C ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLD
Sbjct: 665 GLQARLMSQALRKLTATIKKTNCTVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLD 724

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           IRR G+IK  +   GN+T+VKVVKNK++ PFK  EFDI++GEGIS  GE+ID+GV A IV
Sbjct: 725 IRRTGTIKKGEEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVNARIV 784

Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLV 338
           +KSGAW+++ G+++GQGR+N++ FLREN ++A  IE+ +R+  G+ 
Sbjct: 785 EKSGAWYAYGGEKIGQGRDNAREFLRENRDLAREIENRVREQLGIA 830


>gi|71089094|gb|AAZ23625.1| RecA [uncultured Burkholderia sp.]
          Length = 288

 Score =  325 bits (832), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 203/289 (70%), Positives = 253/289 (87%), Gaps = 1/289 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG++M+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VE YGPESSGKTT
Sbjct: 1   IEKQFGKGSVMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVETYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +A+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LVR
Sbjct: 60  LTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQG++
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQGKD 288


>gi|148879011|emb|CAM07021.1| RecA protein [Mycobacterium llatzerense]
          Length = 290

 Score =  325 bits (832), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 186/291 (63%), Positives = 237/291 (81%), Gaps = 2/291 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG +    + I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q 
Sbjct: 1   RLGDETR--QPISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQA 58

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG  AF+DAEHALD  YA+KLGVD   LL+SQPDTGEQALEI DMLVRSGA+DI+VIDS
Sbjct: 59  AGGIAAFIDAEHALDPDYAQKLGVDTDALLVSQPDTGEQALEIADMLVRSGAIDILVIDS 118

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           VAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFGS
Sbjct: 119 VAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGS 178

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PETTTGG ALKFY+SVR+D+RR+ ++KD     GN+TR K+VKNK+A PFKQ EFDI+YG
Sbjct: 179 PETTTGGKALKFYASVRIDVRRIETLKDGTDAVGNRTRAKIVKNKVAPPFKQAEFDILYG 238

Query: 274 EGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           +GIS  G LID+GV+   + KSG+WF++ G++LGQG+EN++ +L +N + A
Sbjct: 239 KGISKEGSLIDMGVEHGFIRKSGSWFTYDGEQLGQGKENARNYLLQNPDAA 289


>gi|163790802|ref|ZP_02185228.1| recombinase A [Carnobacterium sp. AT7]
 gi|159873982|gb|EDP68060.1| recombinase A [Carnobacterium sp. AT7]
          Length = 308

 Score =  325 bits (832), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 187/308 (60%), Positives = 235/308 (76%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SGSL LD+ALG+GGFP+GRI+E+YGPESSGKTT+ALH +A+ QK GG  AF+DAE+ALD 
Sbjct: 1   SGSLALDVALGVGGFPRGRIIEVYGPESSGKTTVALHAVAEVQKQGGIAAFIDAENALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
            YA  LGVD+  LL+SQPDTGEQ LEI D LV SGAVDI+VIDSVAAL PRAEIEG+MG+
Sbjct: 61  KYAAALGVDIDELLLSQPDTGEQGLEIADALVSSGAVDIVVIDSVAALVPRAEIEGEMGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           S  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++
Sbjct: 121 SHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGVMFGNPEITPGGRALKFYATI 180

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
           RL++RR   IK    I GN+T++KVVKNK+A PF+  E DIMYGEGIS  GEL+D+G   
Sbjct: 181 RLEVRRAEQIKQGTEIMGNRTKIKVVKNKVAPPFRIAEVDIMYGEGISQVGELVDMGSDK 240

Query: 290 SIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
            I+DKSGAW+S+ G+R+GQGREN K F +EN E+   +E  +R   G        +    
Sbjct: 241 DIIDKSGAWYSYNGERIGQGRENVKKFFKENPELRAEVEKKVRAAYGFGEPGAEDQETEK 300

Query: 350 TKDDADKD 357
            + D  +D
Sbjct: 301 PETDLLED 308


>gi|306819658|ref|ZP_07453321.1| recombination protein A [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304552303|gb|EFM40231.1| recombination protein A [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 373

 Score =  325 bits (832), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 205/367 (55%), Positives = 265/367 (72%), Gaps = 10/367 (2%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K   +VDK KAL+ ALS IQ+ +GKG+IM LG    +   +E + +GS+GLD A+GIGG 
Sbjct: 9   KREEVVDKKKALDKALSDIQKEFGKGSIMLLGENTKM--NVEAIPTGSVGLDKAIGIGGV 66

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRIVEIYG ESSGKTT+ALH IA++QK GGT AF+DAEHALD IYAR LGVD+ +LLI
Sbjct: 67  PKGRIVEIYGAESSGKTTIALHCIAEAQKLGGTAAFIDAEHALDPIYARALGVDIDSLLI 126

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQAL+ITD LVRSGA+DIIV+DSVAAL P+ EIEG+MG++  G+QARLMSQALR
Sbjct: 127 SQPDTGEQALDITDTLVRSGALDIIVVDSVAALVPKTEIEGEMGDTFIGLQARLMSQALR 186

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           KLT  I+ SK +++FINQ+R  I   +     ETT GG ALKFY++VRLD+RR G +K  
Sbjct: 187 KLTGHINWSKTVVIFINQLRSTISTGYAQGPTETTAGGRALKFYATVRLDVRRTGQLKQG 246

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           D++ GN+T+VKVVKNK+A PFKQ EFDIMYG+GIS  GEL+D+ +   I+ ++G+WFS  
Sbjct: 247 DNVVGNRTKVKVVKNKVAPPFKQCEFDIMYGKGISKVGELLDIAIATDIIKQAGSWFSMG 306

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE------PAINTKDDADK 356
            +RLGQGREN +  + E+  + E I + + +   L      ++             D D 
Sbjct: 307 EKRLGQGRENIRKLIEEDDNLFEEIRAKVMELDALPEGENDKQYDDAIAALEGETIDLDD 366

Query: 357 DDTDNVE 363
           +  D +E
Sbjct: 367 EAEDEIE 373


>gi|83589164|ref|YP_429173.1| recA protein [Moorella thermoacetica ATCC 39073]
 gi|83572078|gb|ABC18630.1| recA protein [Moorella thermoacetica ATCC 39073]
          Length = 339

 Score =  325 bits (832), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 167/327 (51%), Positives = 240/327 (73%), Gaps = 5/327 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + +AL  AL++I++ +GKGAIM+LG Q  +   +E + +G L LD+ALG+GG P+GRI+E
Sbjct: 5   REQALSKALAEIEKKHGKGAIMRLGQQERL--NVEALPTGILPLDLALGVGGLPRGRIIE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+G E SGKTT+ALH + + QK GG    +DAEHA D  YA+ +GVD++NLL+SQP+ GE
Sbjct: 63  IFGEEGSGKTTIALHAVTEIQKGGGNAVLIDAEHAFDPNYAKTIGVDIENLLVSQPEYGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI   L++S AVDIIVIDSVAAL P+ E+EG+ G+++ G+QARLMSQA+RKL+  +S
Sbjct: 123 QALEIASALIQSSAVDIIVIDSVAALVPKKELEGEFGDAIVGLQARLMSQAMRKLSGIVS 182

Query: 192 RSKCILVFINQMRMKIGV---MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +SK I++FINQ+R KI            TTGG ALKFYSSVR++++R   IK    + G+
Sbjct: 183 KSKTIVIFINQLREKINTGGSFGKPDFVTTGGRALKFYSSVRIEVQRGDQIKKGTEVVGH 242

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + + +VVKNK+A PF+  E D++YG G+S  G L+++ V+  IV KSGAW+ ++G  LGQ
Sbjct: 243 KMKTRVVKNKVAPPFRGCELDLIYGRGMSKEGALLEMAVEKGIVTKSGAWYCWQGDHLGQ 302

Query: 309 GRENSKIFLRENIEIAENIESLLRQNA 335
           G EN+  FLR++ ++A  IES+L+++ 
Sbjct: 303 GHENACEFLRQHPDVAREIESVLKESL 329


>gi|295698290|ref|YP_003602945.1| protein RecA [Candidatus Riesia pediculicola USDA]
 gi|291157452|gb|ADD79897.1| protein RecA [Candidatus Riesia pediculicola USDA]
          Length = 332

 Score =  325 bits (832), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 191/324 (58%), Positives = 257/324 (79%), Gaps = 2/324 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             DK K+++  L QI++ +GKG+IM+LG   S+   +E +S+G L LD+ALG+GG P GR
Sbjct: 4   NQDKMKSIDLVLDQIEKQFGKGSIMRLGQDRSM--KVEAISTGLLSLDVALGVGGLPLGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEIYGPESSGKTTL L  I+ +QK   TCAF+DAEHALD  YA+K+GVD+ NLL SQPD
Sbjct: 62  IVEIYGPESSGKTTLTLQIISSAQKEKKTCAFIDAEHALDPSYAQKIGVDVDNLLCSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GEQALEI D L++SG VD+IVIDSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL S
Sbjct: 122 NGEQALEICDALIKSGTVDVIVIDSVAALTPKAEIEGEIGDSHIGLAARMMSQAMRKLAS 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           ++     +L+FINQ+RMKIGVMFG+ ETTTGGNALKFY+S+RLDIR++GSIK+ + I G+
Sbjct: 182 NLKNFNVLLIFINQIRMKIGVMFGNSETTTGGNALKFYASIRLDIRKIGSIKNGEEIIGS 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
            TRVKVVKNK+A PFKQ EF I+YGEGI+ +GE+IDL V+  +++KSG+W++++G+++GQ
Sbjct: 242 STRVKVVKNKVAVPFKQAEFQILYGEGINIYGEIIDLAVQYKLIEKSGSWYNYQGKQIGQ 301

Query: 309 GRENSKIFLRENIEIAENIESLLR 332
           G+ N   +L+  ++    +   LR
Sbjct: 302 GKVNVSNYLKSKMDFYRELNEKLR 325


>gi|296082805|emb|CBI21810.3| unnamed protein product [Vitis vinifera]
          Length = 384

 Score =  325 bits (832), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 178/360 (49%), Positives = 245/360 (68%), Gaps = 5/360 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +    +   +D+ KALEAA++ I   +GKG++ +LGS G     +E   SG L LD ALG
Sbjct: 22  LSSDPDPRFLDRQKALEAAMNDINSSFGKGSVTRLGSAGGAL--VETFPSGCLTLDFALG 79

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG PKGRIVEIYGPESSGKTTLALH IA+ QK GG    VDAEHA D  Y++ LGVD++
Sbjct: 80  -GGLPKGRIVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVE 138

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL++ QPD GE ALEI D + RSGA+D+I +DSV+ALTPRAEIEG++G    G+QARLMS
Sbjct: 139 NLIVCQPDHGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMS 198

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRK++ + S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++S+RL+IR +G IK
Sbjct: 199 QALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASLRLEIRPIGKIK 258

Query: 241 --DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
               D   G + RV+V K+K++ P+KQ EF+I++GEG+S  G ++D      +V K G+W
Sbjct: 259 SSKGDEDIGLRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCILDCAELMDVVVKKGSW 318

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           +S+   RLGQGR+ +  +LREN  +   IE ++R         L       +    + +D
Sbjct: 319 YSYGDNRLGQGRDRALQYLRENPLVCHEIEKIVRPMMAEGIGQLGAPHVRLSPTSPEDED 378


>gi|1280519|gb|AAA98505.1| RecA protein [Leptospira interrogans]
          Length = 355

 Score =  324 bits (831), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 197/331 (59%), Positives = 255/331 (77%), Gaps = 5/331 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K  A+E A+SQI++ +GKG+IM+LGS  +  + ++V+ SGSL LDIALGIGG+P GRIVE
Sbjct: 20  KKLAIEQAMSQIEKQFGKGSIMKLGSDSA-KQTVQVIPSGSLDLDIALGIGGYPIGRIVE 78

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL L  IA++QK GG  AF+D EHALD  YA+KLGV++  LL+SQPD GE
Sbjct: 79  IYGPESSGKTTLTLSAIAEAQKRGGVAAFIDGEHALDPSYAKKLGVNIDELLVSQPDNGE 138

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           +ALEI + LVRS A+D+IVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT +I+
Sbjct: 139 EALEICESLVRSNAIDLIVIDSVAALVPKAEIEGDMGDSHMGLQARLMSQALRKLTGTIA 198

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +SK +++FINQ+RMKIGVMFGSPETTTGGNALKFY SVRLDIR++ +  +KD I  N+  
Sbjct: 199 KSKTVVIFINQIRMKIGVMFGSPETTTGGNALKFYCSVRLDIRKIETTTEKDRICRNRDE 258

Query: 252 VKVVKNK-MASPFKQVEFDIMYGE-GISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
             VVKNK    PFK  EFDI++   GIS  G L+DLGVK  I+ K+GAW+S+  +++GQG
Sbjct: 259 SNVVKNKSCPPPFKPAEFDIIFNHAGISREGSLVDLGVKHDIIHKAGAWYSYNTEKIGQG 318

Query: 310 RE-NSKIFLRENI-EIAENIESLLRQNAGLV 338
           +   +K +L+    ++   IE+++R    L 
Sbjct: 319 KASAAKEYLKNKTLKLTLTIENMVRDLNSLT 349


>gi|61097693|emb|CAI38691.1| recombinase A [Chromobacterium violaceum]
 gi|61097695|emb|CAI38692.1| recombinase A [Chromobacterium violaceum]
 gi|61097699|emb|CAI38694.1| recombinase A [Chromobacterium violaceum]
 gi|61097705|emb|CAI38697.1| recombinase A [Chromobacterium violaceum]
 gi|61097709|emb|CAI38699.1| recombinase A [Chromobacterium violaceum]
          Length = 285

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 190/286 (66%), Positives = 246/286 (86%), Gaps = 1/286 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++     I E ++V+S+GSL LD+ALG+GG P+GR+VEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRMSDNQ-ITENLQVISTGSLTLDLALGVGGLPRGRVVEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  +A++QK GGTCA++DAE+ALD +YA+KLGV++++LLISQPDTGEQALEI DMLV
Sbjct: 60  TLCLQAVAEAQKLGGTCAYIDAENALDPVYAQKLGVNVEDLLISQPDTGEQALEICDMLV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RS  VD+IV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT +I R+  +++FIN
Sbjct: 120 RSSGVDVIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRTNTLVIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G IK  + + GN TRVKVVKNK++ 
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGGIKKGEEVIGNDTRVKVVKNKVSP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           PF+Q +F+I+YGEGIS  GE+I+LGVK   +DKSGAW+++ GQ++G
Sbjct: 240 PFRQADFEILYGEGISRQGEIIELGVKHGFIDKSGAWYAYNGQKIG 285


>gi|228473221|ref|ZP_04057976.1| protein RecA [Capnocytophaga gingivalis ATCC 33624]
 gi|228275371|gb|EEK14163.1| protein RecA [Capnocytophaga gingivalis ATCC 33624]
          Length = 387

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 199/336 (59%), Positives = 270/336 (80%), Gaps = 5/336 (1%)

Query: 2   DYRKEMNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           D  +E+   D K++AL+ AL ++++ +GKG +M+LG +  + E +EV+ SGSLGLDIALG
Sbjct: 7   DKVEEIKDKDAKAQALKLALERLEKSFGKGTVMRLGDK--VAEKVEVIPSGSLGLDIALG 64

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG+P+GR++EI+G ESSGKTTL LH IA++QK GG+ AF+DAEHA D  YA+K+G+D+ 
Sbjct: 65  VGGYPRGRVIEIFGQESSGKTTLTLHAIAEAQKQGGSAAFIDAEHAFDPYYAKKIGIDID 124

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL++SQPD GEQALEI D LVRSGAVDIIV+DSVAALTP++EI+G+MG+S  G+ ARLMS
Sbjct: 125 NLIVSQPDNGEQALEIVDGLVRSGAVDIIVVDSVAALTPKSEIDGEMGDSKMGVHARLMS 184

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR-VGSI 239
           QALRK+T SIS++ C+++FINQ+R KIGV FG+PETTTGGNALKFYSSVR+D+RR    +
Sbjct: 185 QALRKITGSISKANCVVMFINQLRDKIGVTFGNPETTTGGNALKFYSSVRVDVRRQAAPL 244

Query: 240 KDKD-SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           K+KD    GN TR+KVVKNK+A PF++ EF+I+YGEGIS   E++D G +  I+ KSGAW
Sbjct: 245 KNKDGEAYGNLTRIKVVKNKVAPPFQKTEFEIIYGEGISKVSEIVDWGTEFDILSKSGAW 304

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
           +S++G RL  GR+  K  L +N E+AE IE+ +++ 
Sbjct: 305 YSYQGTRLANGRDAMKALLLDNPEMAEEIENKIKEA 340


>gi|301105134|ref|XP_002901651.1| protein recA [Phytophthora infestans T30-4]
 gi|262100655|gb|EEY58707.1| protein recA [Phytophthora infestans T30-4]
          Length = 366

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 192/349 (55%), Positives = 265/349 (75%), Gaps = 4/349 (1%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
            A+ QI+  +GKGA+MQLGS     E ++V+SSGSL LD+ALG GG P+GR+VEIYGPES
Sbjct: 1   MAIRQIESSFGKGAVMQLGS-TKTAERVDVISSGSLSLDLALGTGGIPRGRVVEIYGPES 59

Query: 78  SGKTTLALHTIAQSQKT-GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SGKTTLAL  IA++QKT GG CAF+DAEHA+D+ YA+ LGVD+  L +SQPD+GE+ALEI
Sbjct: 60  SGKTTLALSCIAEAQKTEGGVCAFIDAEHAIDAHYAKALGVDIDALYVSQPDSGEEALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L+RSGAVD++V+DSVAAL PRAE+EG+MG+    +QARLMSQALRKLT S+S+S C 
Sbjct: 120 ADTLIRSGAVDLVVLDSVAALVPRAELEGEMGDQQIALQARLMSQALRKLTGSLSKSNCT 179

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++F+NQ+R K+G++FGSPE T+GG AL++Y+SVRLDIRR  +IK+ D + GN+T VKV K
Sbjct: 180 IIFLNQIRQKVGIIFGSPEVTSGGTALRYYASVRLDIRRKTAIKEGDQVVGNETAVKVAK 239

Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG--QRLGQGRENSK 314
           NK+ASPFK   FD+M+G GI    EL+DLGV+  ++ +SGAW+S  G  + + QG+  +K
Sbjct: 240 NKLASPFKVATFDMMFGRGIDRQSELLDLGVQHGLLKRSGAWYSLAGSDEPIAQGKAKAK 299

Query: 315 IFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           +FL+EN EI++++E+ LR+      ++  +       +   +D+  + E
Sbjct: 300 VFLQENPEISKDLEAKLRRMLFEPTEADEKADEGVGVESEGEDEATSAE 348


>gi|46199768|ref|YP_005435.1| recombinase A [Thermus thermophilus HB27]
 gi|47606740|sp|P61500|RECA_THET2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|46197395|gb|AAS81808.1| recA protein [Thermus thermophilus HB27]
          Length = 340

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 188/328 (57%), Positives = 252/328 (76%), Gaps = 3/328 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KALE AL  I++ +GKGA+M+LG      + ++V+ +GSL LD+ALGIGG P+GRIVE
Sbjct: 5   KRKALENALKAIEKEFGKGAVMRLGEMPK--QQVDVIPTGSLALDLALGIGGIPRGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPES GKTTLAL  IAQ+Q+ GG  AFVDAEHALD +YA++LGV +++LL+SQPDTGE
Sbjct: 63  IYGPESGGKTTLALTIIAQAQRRGGVAAFVDAEHALDPLYAQRLGVQVEDLLVSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI ++L RSGAVD+IV+DSVAAL PRAEIEG+MG+   G+QARLMSQALRKLT+ ++
Sbjct: 123 QALEIVELLARSGAVDVIVVDSVAALVPRAEIEGEMGDQHVGLQARLMSQALRKLTAVLA 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS-IKDKDSITGNQT 250
           +S    +FINQ+R K+GV +G+PETT GG ALKFY+SVRLD+R+ G  IK  +   G + 
Sbjct: 183 KSNTAAIFINQVREKVGVTYGNPETTPGGRALKFYASVRLDVRKSGQPIKVGNEAVGVKV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++ E +I +G G+    +L+++ V A +++K+G+WFS+   RLGQG+
Sbjct: 243 RVKVVKNKLAPPFREAELEIYFGRGLDPVADLVNVAVAAGVIEKAGSWFSYGELRLGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338
           E +   LRE  E+ E I + + + AG V
Sbjct: 303 EKAAEALRERPELLEEIRTKVLERAGEV 330


>gi|187735169|ref|YP_001877281.1| recA protein [Akkermansia muciniphila ATCC BAA-835]
 gi|187425221|gb|ACD04500.1| recA protein [Akkermansia muciniphila ATCC BAA-835]
 gi|283468510|emb|CAP18781.1| putative bacterial recombination protein recA [Akkermansia
           muciniphila]
          Length = 346

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 181/325 (55%), Positives = 245/325 (75%), Gaps = 3/325 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + + L+ ALSQIQ+ +G+ AIM+LG    +   ++V+ +G+L +D ALG+GGF +GRIVE
Sbjct: 18  RKRNLDLALSQIQKDFGENAIMRLGDNVKM--EVDVIPTGNLLIDRALGVGGFARGRIVE 75

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL L  IAQ+QK+GG  AF+D EHALD  YA +LGV+L +LL+SQP +GE
Sbjct: 76  IYGPESSGKTTLTLTAIAQAQKSGGLAAFIDVEHALDPQYAARLGVNLDDLLVSQPSSGE 135

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           +AL+I + LVRS A+D+IV+DSVAAL  + E+EG++G+S  G QARLMS ALRKLTS IS
Sbjct: 136 EALQICEALVRSNAIDVIVVDSVAALVTKQELEGEIGDSTVGAQARLMSAALRKLTSFIS 195

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT-GNQT 250
           +++ + +F NQ+R KIGVMFG+PETT GG ALKFY+SVR+DIRR+G IK  D +  GN+T
Sbjct: 196 KARTVCIFTNQIREKIGVMFGNPETTPGGRALKFYASVRVDIRRIGQIKGSDGVIAGNRT 255

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF + EFDIMY EGIS  G L+DL  +  I+ K G+W S+ G ++ QGR
Sbjct: 256 KIKVVKNKVAPPFTECEFDIMYNEGISSVGSLLDLATEYDIIQKRGSWISYNGSQIAQGR 315

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
           + +K  L+ N E+   IE  ++   
Sbjct: 316 DAAKEALKSNPELYAEIEEQVKAKM 340


>gi|307297691|ref|ZP_07577497.1| recA protein [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916951|gb|EFN47333.1| recA protein [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 349

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 188/336 (55%), Positives = 255/336 (75%), Gaps = 6/336 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   DK  ALE A+  I++ +GKG++M +G +    + IEV+ +GSL +DIAL +GG+P+
Sbjct: 1   MLSKDKKNALERAIKDIEKQFGKGSVMLMGDKEE-HKSIEVIPTGSLAVDIALTVGGYPR 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYG ESSGKTT+ALH IA+ QK GG  AF+DAEHALD  YA+ LGVD+ NLLISQ
Sbjct: 60  GRVVEIYGAESSGKTTIALHAIAEVQKRGGIAAFIDAEHALDIHYAQNLGVDVDNLLISQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQAL+I D L+RS AVD+IV+DSVAAL PR EIEG MGE   G+QARLMSQALRK+
Sbjct: 120 PDYGEQALDIVDGLIRSNAVDLIVVDSVAALVPRTEIEGAMGELQVGLQARLMSQALRKI 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + ++S+SKCI++FINQ RMKIGV++G+PETTTGG ALKFYSSVRL+I+R  +I++ +++ 
Sbjct: 180 SGNVSKSKCIVIFINQTRMKIGVVYGNPETTTGGVALKFYSSVRLEIKRGSAIREGNTVL 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF----- 301
           GN+T +KVVKNK+A PF++ + DI+YG+GI    EL +L +  +++++ GAW+++     
Sbjct: 240 GNETTIKVVKNKVAPPFREAKVDIIYGQGIEHANELFNLALSENMIERKGAWYTYISEDN 299

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
               LGQG+ N   F++EN E+   IE+ LR    L
Sbjct: 300 NEVSLGQGKSNGVEFMKENPELILEIENRLRAKYNL 335


>gi|311110401|ref|ZP_07711798.1| protein RecA [Lactobacillus gasseri MV-22]
 gi|311065555|gb|EFQ45895.1| protein RecA [Lactobacillus gasseri MV-22]
          Length = 348

 Score =  324 bits (830), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 174/317 (54%), Positives = 243/317 (76%), Gaps = 2/317 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M++G +  +   I  + SGSL LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ Q
Sbjct: 1   MRMGEK--VDTQISTIPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGT A++DAE+A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+D
Sbjct: 59  KRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVD 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL PRAEI+GDMG+S  G+QARLMSQALRKL+ +IS++K I VFINQ+R K+GVMFG
Sbjct: 119 SVAALVPRAEIDGDMGDSHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETT GG ALKFYS++RL++RR   IK    + GN+ ++KVVKNK+A PFK  E DIMY
Sbjct: 179 NPETTPGGRALKFYSTIRLEVRRAEQIKQGSDVIGNRVKLKVVKNKVAPPFKVAEVDIMY 238

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           G+GIS  GELID+     I+ K+G+W+S+   R+GQGREN+K +L E+ ++ + ++  +R
Sbjct: 239 GKGISQTGELIDMAADKDIIKKAGSWYSYGDDRIGQGRENAKQYLEEHPDVYDEVKEKVR 298

Query: 333 QNAGLVADSLLQEPAIN 349
           +  G+ A ++ +     
Sbjct: 299 KAYGIDAKAIEERENPE 315


>gi|199599599|ref|ZP_03212982.1| RecA/RadA recombinase [Lactobacillus rhamnosus HN001]
 gi|258509638|ref|YP_003172389.1| RecA recombinase [Lactobacillus rhamnosus GG]
 gi|258540839|ref|YP_003175338.1| RecA recombinase [Lactobacillus rhamnosus Lc 705]
 gi|199589514|gb|EDY97637.1| RecA/RadA recombinase [Lactobacillus rhamnosus HN001]
 gi|257149565|emb|CAR88538.1| RecA recombinase [Lactobacillus rhamnosus GG]
 gi|257152515|emb|CAR91487.1| RecA recombinase [Lactobacillus rhamnosus Lc 705]
 gi|259650903|dbj|BAI43065.1| recombinase RecA [Lactobacillus rhamnosus GG]
          Length = 395

 Score =  324 bits (830), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 172/366 (46%), Positives = 257/366 (70%), Gaps = 7/366 (1%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
              K+ +  D+   LE AL +I + +G+GA+M++G +  +   I+VVS+G L LD+ALG+
Sbjct: 9   ADNKKSDATDRETELEKALQKITKAFGEGAVMKMGDRPEL--KIDVVSTGILSLDLALGV 66

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GRIVEIYGPESSGKTT+AL TIA+ QKTGG  A++DAE+A+D  YA +LGV++ +
Sbjct: 67  GGLPRGRIVEIYGPESSGKTTIALQTIAELQKTGGKAAYIDAENAMDPKYAAELGVNIDD 126

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQP++GEQ LEI +ML+ S AVD++VIDSVAAL P+AEIEG +G+S  G+QARLMSQ
Sbjct: 127 LLLSQPNSGEQGLEIAEMLIESAAVDVVVIDSVAALVPKAEIEGAIGDSHVGLQARLMSQ 186

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRK+  +I+ +  +++FINQ+R K+G++FG+PE T GG ALKFY+SVR+++R+   +KD
Sbjct: 187 ALRKMAGTINNTNTLVIFINQLREKVGIVFGNPEVTPGGRALKFYASVRIEVRKGQQVKD 246

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV----KASIVDKSGA 297
             ++ G  +++KV KNK+A PFK VE  + +G GI    ++I+L         ++ KSG+
Sbjct: 247 GKNVVGFASKLKVTKNKVAPPFKTVETTMSFGHGIEHNTDMINLATDKDNDLDVITKSGS 306

Query: 298 WFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           W+++  +RLGQG  N+  +L E+ E+++ IE+ +R+ +         E     KD+    
Sbjct: 307 WYNYGKERLGQGLVNASHYLDEHPEVSKEIEAKIREQSAPKPKE-EDEKKDTAKDEKTTA 365

Query: 358 DTDNVE 363
           D    E
Sbjct: 366 DKKPEE 371


>gi|71089162|gb|AAZ23659.1| RecA [uncultured Burkholderia sp.]
          Length = 288

 Score =  324 bits (830), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 205/289 (70%), Positives = 255/289 (88%), Gaps = 1/289 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRLG-AGEVVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA+KLGV+  +LLISQPDTGEQALEI D LVR
Sbjct: 60  LTLQVIAEMQKIGGTAAFIDAEHALDVQYAQKLGVNASDLLISQPDTGEQALEIADALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVK+K++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKSKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           F++  FDI+YGEGIS  GE+IDLGV+A +VDK+GAW+S+ G+R+GQG++
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKLVDKAGAWYSYNGERIGQGKD 288


>gi|160858113|emb|CAP18002.1| DNA recombinase [Burkholderia lata]
          Length = 324

 Score =  324 bits (830), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 208/300 (69%), Positives = 256/300 (85%), Gaps = 1/300 (0%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
               + I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT 
Sbjct: 14  ARRRKNIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKIGGTA 73

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL 
Sbjct: 74  AFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALV 133

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTT
Sbjct: 134 PKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTT 193

Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISF 278
           GGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS 
Sbjct: 194 GGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISR 253

Query: 279 FGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE-IAENIESLLRQNAGL 337
            GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E  A + E    ++ G+
Sbjct: 254 QGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPENRARDREPAFAESLGV 313


>gi|61097703|emb|CAI38696.1| recombinase A [Chromobacterium violaceum]
 gi|61097713|emb|CAI38701.1| recombinase A [Chromobacterium violaceum]
          Length = 285

 Score =  324 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 190/286 (66%), Positives = 246/286 (86%), Gaps = 1/286 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++     I E ++V+S+GSL LD+ALG+GG P+GR+VEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRMSDNQ-ITENLQVISTGSLTLDLALGVGGLPRGRVVEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  +A++QK GGTCA++DAE+ALD +YA+KLGV++++LLISQPDTGEQALEI DMLV
Sbjct: 60  TLCLQAVAEAQKLGGTCAYIDAENALDPVYAQKLGVNVEDLLISQPDTGEQALEICDMLV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RS  VD+IV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT +I R+  +++FIN
Sbjct: 120 RSSGVDVIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRTNTLVIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G IK  + + GN TRVKVVKNK++ 
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGGIKKGEELIGNDTRVKVVKNKVSP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           PF+Q +F+I+YGEGIS  GE+I+LGVK   +DKSGAW+++ GQ++G
Sbjct: 240 PFRQADFEILYGEGISRQGEIIELGVKHGFIDKSGAWYAYNGQKIG 285


>gi|71089146|gb|AAZ23651.1| RecA [uncultured Burkholderia sp.]
          Length = 288

 Score =  324 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 205/289 (70%), Positives = 252/289 (87%), Gaps = 1/289 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG++M+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSVMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LL+SQPDTGEQALEI D LVR
Sbjct: 60  LTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSELLVSQPDTGEQALEIADALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G R+GQG++
Sbjct: 240 FRESIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGDRIGQGKD 288


>gi|154249970|ref|YP_001410795.1| recombinase A [Fervidobacterium nodosum Rt17-B1]
 gi|154153906|gb|ABS61138.1| recA protein [Fervidobacterium nodosum Rt17-B1]
          Length = 357

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 186/351 (52%), Positives = 255/351 (72%), Gaps = 6/351 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+   K   L+ A+S+I++ YGKG+IM LG  G++ + I+V+ SGSL +DIA G+GG+P+
Sbjct: 1   MSDEMKKDVLKKAISKIEKTYGKGSIMVLGE-GNLVQEIDVIPSGSLAIDIASGVGGYPR 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTT+ALH IA  QK GG  AFVDAEHALD  YA+ LG+DL  LL+SQ
Sbjct: 60  GRIIEIYGPESSGKTTIALHAIASVQKLGGIAAFVDAEHALDLNYAKNLGIDLSELLVSQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQAL+I D LVRS AVD+IV+DSVAAL PRAEIEG MG++  G+QARLMSQALRKL
Sbjct: 120 PDYGEQALDIVDELVRSNAVDLIVVDSVAALVPRAEIEGAMGDAQIGLQARLMSQALRKL 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
             ++++SK +++FINQ RMKIGVM+G+PETTTGG ALKFY+++R+++R  G I + +   
Sbjct: 180 AGNVNKSKVVVIFINQTRMKIGVMYGNPETTTGGVALKFYATMRIEVRSAGKIVEGNEHI 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG--- 303
           GN+  +K VKNK+A PF+    DI+YG+GI    EL ++ V   ++D+ G+WF+++    
Sbjct: 240 GNEVNIKFVKNKVAPPFRTASVDIIYGKGIVRENELFNIAVNEGLIDRRGSWFTYEDLSG 299

Query: 304 --QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
               LGQG+ N+  +L E+ E+A+ IE  +R+      D + QE     + 
Sbjct: 300 KEHSLGQGKSNAVNYLVEHSEVADEIEKRIREKYLAKPDQVSQEKDGENEK 350


>gi|241896398|ref|ZP_04783694.1| recombination protein A [Weissella paramesenteroides ATCC 33313]
 gi|241870378|gb|EER74129.1| recombination protein A [Weissella paramesenteroides ATCC 33313]
          Length = 388

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 191/368 (51%), Positives = 261/368 (70%), Gaps = 13/368 (3%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K  +  ++  AL  AL +I++ +GKG++M+LG   S F  +E   +GSL LD+ALGIGG+
Sbjct: 23  KITDPKERQTALNDALKKIEKSFGKGSVMKLGD--SRFTKVESTPTGSLKLDVALGIGGY 80

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGR++EIYGPESSGKTTLALH +A++QK GG  A++DAE+A+D  YA+ LGVD+  LL+
Sbjct: 81  PKGRVIEIYGPESSGKTTLALHAVAEAQKNGGIVAYIDAENAMDVEYAKALGVDVDELLL 140

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQ L I D L+ SGA+D++VIDSVAALTP+AEI+G++G+S  G+QAR+MSQALR
Sbjct: 141 SQPDTGEQGLAIADALIASGAIDMVVIDSVAALTPKAEIDGEIGDSSVGLQARMMSQALR 200

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---- 240
           K++ +I ++    +FINQ+R KIGVMFG+PETT GG ALKFYSSVRLD+RR G I     
Sbjct: 201 KMSGAILKTGTTAIFINQLREKIGVMFGNPETTPGGRALKFYSSVRLDVRRKGGIDATKA 260

Query: 241 --DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
             D     GN TR+KVVKNK+A+PF++VE +I++G+GIS  GE+IDL     I+ K+G+W
Sbjct: 261 DGDNIKSVGNLTRIKVVKNKVAAPFREVEVEILFGKGISKTGEMIDLAADKEIIIKAGSW 320

Query: 299 FSFKGQRLGQGRENSKIFLR--ENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           FS+KG+++GQG+ N   +L   E+  I + I   +R       D     P     +  D+
Sbjct: 321 FSYKGEKIGQGKVNVIRWLEEPEHKAIYDEIYDQVRMAYIGSHDGSADAPEAAQDEATDE 380

Query: 357 ---DDTDN 361
              D  DN
Sbjct: 381 IPLDIEDN 388


>gi|295098974|emb|CBK88063.1| RecA protein [Eubacterium cylindroides T2-87]
          Length = 334

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 184/322 (57%), Positives = 252/322 (78%), Gaps = 2/322 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K K LE  L++I+R YGKG+IM+LG + ++   +E + SGSL LD ALGIGG+PKGRI+E
Sbjct: 7   KDKLLEDVLTEIEREYGKGSIMKLGDRAAV--DVEPIPSGSLLLDQALGIGGYPKGRIIE 64

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPESSGKTTLALH IAQ QK GG  AF+DAE+A+D +YAR LGVD+  L++SQPD+GE
Sbjct: 65  IFGPESSGKTTLALHAIAQVQKKGGRAAFIDAENAIDPVYARNLGVDIDELILSQPDSGE 124

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q L I  ML+ SGAVD++V+DSVAAL P+AE++G+MG+   G QAR+MS+A+RKL   ++
Sbjct: 125 QGLNIMLMLIDSGAVDLVVVDSVAALVPQAELDGEMGDLQVGSQARMMSKAMRKLAGLMN 184

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
            ++C  +FINQ+R K+GV++G+PETT GG ALKFYSSVR+DIR+  +IK+   I GN+ +
Sbjct: 185 HNECTAIFINQLREKVGVVYGNPETTPGGRALKFYSSVRIDIRKADAIKNGTDIVGNKVK 244

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PFK    +IMYGEGIS+  ELIDL V A+I+ K+GAWFS++G+++GQG+E
Sbjct: 245 VKVVKNKVAPPFKSAVLEIMYGEGISYVSELIDLCVDANIIKKAGAWFSYEGEKIGQGKE 304

Query: 312 NSKIFLRENIEIAENIESLLRQ 333
            +K +++ N +    +E  L+ 
Sbjct: 305 AAKQYIKNNPDFMSMLEEKLKA 326


>gi|229551416|ref|ZP_04440141.1| recombination protein A [Lactobacillus rhamnosus LMS2-1]
 gi|229315375|gb|EEN81348.1| recombination protein A [Lactobacillus rhamnosus LMS2-1]
          Length = 403

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 172/366 (46%), Positives = 257/366 (70%), Gaps = 7/366 (1%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
              K+ +  D+   LE AL +I + +G+GA+M++G +  +   I+VVS+G L LD+ALG+
Sbjct: 17  ADNKKSDATDRETELEKALQKITKAFGEGAVMKMGDRPEL--KIDVVSTGILSLDLALGV 74

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GRIVEIYGPESSGKTT+AL TIA+ QKTGG  A++DAE+A+D  YA +LGV++ +
Sbjct: 75  GGLPRGRIVEIYGPESSGKTTIALQTIAELQKTGGKAAYIDAENAMDPKYAAELGVNIDD 134

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQP++GEQ LEI +ML+ S AVD++VIDSVAAL P+AEIEG +G+S  G+QARLMSQ
Sbjct: 135 LLLSQPNSGEQGLEIAEMLIESAAVDVVVIDSVAALVPKAEIEGAIGDSHVGLQARLMSQ 194

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRK+  +I+ +  +++FINQ+R K+G++FG+PE T GG ALKFY+SVR+++R+   +KD
Sbjct: 195 ALRKMAGTINNTNTLVIFINQLREKVGIVFGNPEVTPGGRALKFYASVRIEVRKGQQVKD 254

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV----KASIVDKSGA 297
             ++ G  +++KV KNK+A PFK VE  + +G GI    ++I+L         ++ KSG+
Sbjct: 255 GKNVVGFASKLKVTKNKVAPPFKTVETTMSFGHGIEHNTDMINLATDKDNDLDVITKSGS 314

Query: 298 WFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           W+++  +RLGQG  N+  +L E+ E+++ IE+ +R+ +         E     KD+    
Sbjct: 315 WYNYGKERLGQGLVNASHYLDEHPEVSKEIEAKIREQSAPKPKE-EDEKKDTAKDEKTTA 373

Query: 358 DTDNVE 363
           D    E
Sbjct: 374 DKKPEE 379


>gi|148878985|emb|CAM07008.1| RecA protein [Mycobacterium sp. MG1]
 gi|148879001|emb|CAM07016.1| RecA protein [Mycobacterium sp. MG9]
          Length = 289

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 189/290 (65%), Positives = 241/290 (83%), Gaps = 2/290 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG +  + + I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q  
Sbjct: 1   LGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAA 58

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTGEQALEI DMLVRSGA+ ++VIDSV
Sbjct: 59  GGIAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAISLLVIDSV 118

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AAL PRAEIEG+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFGSP
Sbjct: 119 AALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSP 178

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           ETTTGG ALKFYSSVRLD+RR+ ++KD     GN+TRVKVVKNK++ PFKQ EFDI+YG+
Sbjct: 179 ETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGK 238

Query: 275 GISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           GIS  G LID+GV+   + KSG+WF+++G++LGQG+EN++ FL EN+++A
Sbjct: 239 GISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGKENARNFLLENVDVA 288


>gi|297624371|ref|YP_003705805.1| recA protein [Truepera radiovictrix DSM 17093]
 gi|297165551|gb|ADI15262.1| recA protein [Truepera radiovictrix DSM 17093]
          Length = 360

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 179/320 (55%), Positives = 248/320 (77%), Gaps = 1/320 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + ++LE+ LSQI++ +GKGAIM+LG   S+ +   V+ +GS+ +D+ALG+GG P+GRI+E
Sbjct: 21  RRRSLESTLSQIEKQFGKGAIMRLGDDRSLLDQ-GVIPTGSMSVDLALGVGGVPRGRIIE 79

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPES GKTTL+LH IA++Q+ GG  AFVDAEHALD  YA+ LGVD   LL+SQPDTGE
Sbjct: 80  IYGPESGGKTTLSLHVIAEAQRLGGVAAFVDAEHALDPTYAKALGVDTDELLVSQPDTGE 139

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEIT++LVRSGAVD++V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKLT +++
Sbjct: 140 QALEITELLVRSGAVDVVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTGALA 199

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S+   +FINQ+R KIGVM+G+PETT GG ALKFY+SVRL++RR G +K      GNQ R
Sbjct: 200 KSRTTAIFINQIREKIGVMYGNPETTPGGRALKFYASVRLEVRRKGDVKSGADKVGNQVR 259

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV KNK+A PFK+ E +I++G+GI   G+LI +     ++ KSG+++ + G  +GQG+E
Sbjct: 260 VKVTKNKVAPPFKEAEVEILFGKGIDKLGDLITIATDLDLIQKSGSFYKYDGVTIGQGKE 319

Query: 312 NSKIFLRENIEIAENIESLL 331
            +  +L +N  + + +   +
Sbjct: 320 KAASYLLDNPHLIDALRQRV 339


>gi|308237895|emb|CBK52094.1| RecA protein [Acidithiobacillus ferrooxidans]
 gi|308237907|emb|CBK52100.1| RecA protein [Acidithiobacillus ferrooxidans]
          Length = 278

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 205/278 (73%), Positives = 245/278 (88%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALG+GG P+GR+VEIYGPESSGKTTL LH IA  Q  GGT AF+DAEHALD  
Sbjct: 1   GSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLTLHAIASCQAAGGTAAFIDAEHALDPG 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA KLGVDL+NLLISQPDTGEQALEI DMLVRSGAVD+IVIDSVAALTP+AEIEGDMG+S
Sbjct: 61  YAHKLGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGDMGDS 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
             G+QARLMSQALRKLT++ISR+  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVR
Sbjct: 121 HVGLQARLMSQALRKLTANISRTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVR 180

Query: 231 LDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS 290
           LDIRR+G+IK  D + GN TRVKVVKNK+A PF++ EF I YGEGIS   EL+DLGVK  
Sbjct: 181 LDIRRIGAIKKSDEVVGNDTRVKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVKFD 240

Query: 291 IVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           IV+KSGAW+S++G+R+GQG++N++ +L+E+ E+A NIE
Sbjct: 241 IVEKSGAWYSYQGERIGQGKDNARQYLKEHPELAANIE 278


>gi|71089178|gb|AAZ23667.1| RecA [uncultured Burkholderia sp.]
 gi|71089180|gb|AAZ23668.1| RecA [uncultured Burkholderia sp.]
 gi|71089182|gb|AAZ23669.1| RecA [uncultured Burkholderia sp.]
          Length = 288

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 206/289 (71%), Positives = 252/289 (87%), Gaps = 1/289 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGD-AEAKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAEMQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G ++GQG++
Sbjct: 240 FRESIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGDKIGQGKD 288


>gi|148878993|emb|CAM07012.1| RecA protein [Mycobacterium sp. MG5]
          Length = 289

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 190/290 (65%), Positives = 241/290 (83%), Gaps = 2/290 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG +  + + I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q  
Sbjct: 1   LGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAA 58

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTGEQALEI DMLVRSGA+ +IVIDSV
Sbjct: 59  GGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAISLIVIDSV 118

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AAL PRAEIEG+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFGSP
Sbjct: 119 AALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSP 178

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           ETTTGG ALKFYSSVRLD+RR+ ++KD     GN+TRVKVVKNK++ PFKQ EFDI+YG+
Sbjct: 179 ETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGK 238

Query: 275 GISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           GIS  G LID+GV+   + KSG+WF+++G++LGQG+EN++ FL EN+++A
Sbjct: 239 GISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGKENARNFLLENVDVA 288


>gi|61097707|emb|CAI38698.1| recombinase A [Chromobacterium piscinae]
          Length = 285

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 193/286 (67%), Positives = 242/286 (84%), Gaps = 1/286 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM++     I E ++VVS+GSL LD+ALG+GG P+GR+VEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRMSDNQ-INENLQVVSTGSLTLDLALGVGGLPRGRVVEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  +A+ QK GGTCA++DAE+ALD  YA+KLGV + +LLISQPDTGEQALEI DMLV
Sbjct: 60  TLCLQAVAEMQKLGGTCAYIDAENALDPQYAQKLGVKVDDLLISQPDTGEQALEICDMLV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RS  VD+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT +I R+  +++FIN
Sbjct: 120 RSSGVDLIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRTNTLVIFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G IK  + + GN TRVKVVKNK++ 
Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGGIKKGEEVIGNDTRVKVVKNKVSP 239

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           PF+Q +F+I+YGEGIS  GE+I+LGVK   VDKSGAW+++ GQ++G
Sbjct: 240 PFRQADFEILYGEGISRQGEIIELGVKHGFVDKSGAWYAYNGQKIG 285


>gi|148878995|emb|CAM07013.1| RecA protein [Mycobacterium sp. MG6]
          Length = 288

 Score =  323 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 189/290 (65%), Positives = 241/290 (83%), Gaps = 2/290 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG +  + + I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q  
Sbjct: 1   LGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAA 58

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTGEQALEI DMLVRSGA+ ++VIDSV
Sbjct: 59  GGIAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAISLLVIDSV 118

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AAL PRAEIEG+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFGSP
Sbjct: 119 AALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSP 178

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           ETTTGG ALKFYSSVRLD+RR+ ++KD     GN+TRVKVVKNK++ PFKQ EFDI+YG+
Sbjct: 179 ETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGK 238

Query: 275 GISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           GIS  G LID+GV+   + KSG+WF+++G++LGQG+EN++ FL EN+++A
Sbjct: 239 GISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGKENARNFLLENVDVA 288


>gi|262113632|emb|CBB11811.1| recombinase A [Francisella tularensis subsp. tularensis]
          Length = 323

 Score =  323 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 207/307 (67%), Positives = 258/307 (84%), Gaps = 1/307 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKGAIM+LG Q +    I+V+ SG + LD+ALGIGG+PKGRI+EIYG ESSGKTTL L 
Sbjct: 2   FGKGAIMRLGDQEAAH-DIDVIPSGIIALDVALGIGGYPKGRIIEIYGHESSGKTTLTLL 60

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IAQ QK GGT AFVDAEHALD  YA+ LGVD+ NL++SQPDTGEQALEI DMLVRSG V
Sbjct: 61  AIAQCQKQGGTAAFVDAEHALDPKYAKLLGVDVDNLIVSQPDTGEQALEIADMLVRSGGV 120

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           DI+VIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT++I RS  +++FINQ+RMK
Sbjct: 121 DIVVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIKRSNTLVIFINQIRMK 180

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRL++++ GSIKD   ++GN+ +VKVVKNK+A PFKQ 
Sbjct: 181 IGVMFGNPETTTGGNALKFYSSVRLEVKKGGSIKDGIDVSGNEIKVKVVKNKVAPPFKQA 240

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
           +F+++YGEGIS   ELIDLG K +I++KSGAW+S+KG+++GQG+E SK +L+EN    + 
Sbjct: 241 DFELIYGEGISLEAELIDLGAKYNIIEKSGAWYSYKGKKIGQGKEKSKEYLKENTAERDE 300

Query: 327 IESLLRQ 333
           IE  + +
Sbjct: 301 IERAILE 307


>gi|157326961|gb|ABV44593.1| RecA [Burkholderia cenocepacia]
          Length = 287

 Score =  323 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 206/287 (71%), Positives = 253/287 (88%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           LGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA
Sbjct: 1   LGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLP
Sbjct: 61  SKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLP 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLD
Sbjct: 121 GLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLD 180

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           IRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IV
Sbjct: 181 IRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIV 240

Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           DK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ +R++ G+V+
Sbjct: 241 DKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIRESLGVVS 287


>gi|148879133|emb|CAM58517.1| RecA protein [Mycobacterium llatzerense]
          Length = 289

 Score =  323 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 186/290 (64%), Positives = 236/290 (81%), Gaps = 2/290 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG +    + I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q  
Sbjct: 1   LGDETR--QPISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAA 58

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG  AF+DAEHALD  YA+KLGVD   LL+SQPDTGEQALEI DMLVRSGA+DI+VIDSV
Sbjct: 59  GGIAAFIDAEHALDPDYAQKLGVDTDALLVSQPDTGEQALEIADMLVRSGAIDILVIDSV 118

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AAL PRAEIEG+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFGSP
Sbjct: 119 AALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSP 178

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           ETTTGG ALKFY+SVR+D+RR+ ++KD     GN+TR K+VKNK+A PFKQ EFDI+YG+
Sbjct: 179 ETTTGGKALKFYASVRIDVRRIETLKDGTDAVGNRTRAKIVKNKVAPPFKQAEFDILYGK 238

Query: 275 GISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           GIS  G LID+GV+   + KSG+WF++ G++LGQG+EN++ +L +N + A
Sbjct: 239 GISKEGSLIDMGVEHGFIRKSGSWFTYDGEQLGQGKENARNYLLQNPDAA 288


>gi|71725933|gb|AAZ39084.1| homologous recombination protein [Exiguobacterium antarcticum]
          Length = 289

 Score =  323 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 192/291 (65%), Positives = 241/291 (82%), Gaps = 2/291 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG      + + V+SSGS+ LDIALG GG+P+GR++E+YGPESSGKTT+
Sbjct: 1   EKQFGKGSIMRLGENAD--QRVSVISSGSITLDIALGAGGYPRGRVIEVYGPESSGKTTV 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALH IA+ QK GG  AF+DAEHALD  YA KLGV++  LL+SQPDTGEQALE+ + LVRS
Sbjct: 59  ALHAIAEVQKQGGQAAFIDAEHALDPAYASKLGVNIDELLLSQPDTGEQALEVAEALVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GA DI+V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ + ++SK I++FINQ+
Sbjct: 119 GAADILVVDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLSGATNKSKTIVIFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           R KIGVMFG+PETT GG ALKFYSSVRL++RR  ++K+   I GN+T++KVVKNK+A PF
Sbjct: 179 REKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKNGTDIVGNRTKLKVVKNKIAPPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           KQ E DIMYG+GIS FGELIDLG    IV KSGAW+S+  +RLGQGRENSK
Sbjct: 239 KQAEVDIMYGQGISKFGELIDLGTDLDIVQKSGAWYSYNSERLGQGRENSK 289


>gi|71089156|gb|AAZ23656.1| RecA [uncultured Burkholderia sp.]
 gi|71089160|gb|AAZ23658.1| RecA [uncultured Burkholderia sp.]
          Length = 288

 Score =  323 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 205/289 (70%), Positives = 252/289 (87%), Gaps = 1/289 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG++M+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSVMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LL+SQPDTGEQALEI D LVR
Sbjct: 60  LTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNELLVSQPDTGEQALEIADALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G R+GQG++
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYSGDRIGQGKD 288


>gi|227532940|ref|ZP_03962989.1| recombination protein A [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227189341|gb|EEI69408.1| recombination protein A [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 423

 Score =  323 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 170/355 (47%), Positives = 253/355 (71%), Gaps = 6/355 (1%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +   + +  D+   LE AL +I++ +G+GA+M++G +  +   ++VVS+G L LD+ALG+
Sbjct: 35  NDNAKSDATDRDTELEKALQKIKKAFGEGAVMKMGDRPEL--KVDVVSTGILSLDLALGV 92

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GRIVE+YGPES+GKTT+AL TIA+ QK+GG  A++DAE+A+D  YA +LGV++ +
Sbjct: 93  GGLPRGRIVEVYGPESTGKTTIALQTIAELQKSGGKAAYIDAENAMDPKYAAELGVNIDD 152

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQP++GEQ LEI +ML+ S AVDI+VIDSVAAL P+AEIEG +G+S  G+QARLMSQ
Sbjct: 153 LLLSQPNSGEQGLEIAEMLIESAAVDIVVIDSVAALVPKAEIEGAIGDSHVGLQARLMSQ 212

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRK+  SI+ +  +++FINQ+R K+GVMFG+PE T GG ALKFY+SVR++++R   +KD
Sbjct: 213 ALRKMAGSINNTNTLVIFINQLREKVGVMFGNPEVTPGGRALKFYASVRIEVKRGQQVKD 272

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA----SIVDKSGA 297
              + G  +++KV KNK+A PFK VE  + +G GI    ++I+L         ++ KSG+
Sbjct: 273 GKDVVGFASKLKVTKNKVAPPFKSVETTMSFGHGIEHNTDMINLATDKDNDIDVITKSGS 332

Query: 298 WFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           W+++  +RLGQG  N+  +L E+ EI++ IE  +R+           E   + KD
Sbjct: 333 WYNYGKERLGQGLVNASHYLDEHPEISKEIEEKIREQVAPKKPEEADEKQDDKKD 387


>gi|304383346|ref|ZP_07365812.1| recombination protein A [Prevotella marshii DSM 16973]
 gi|304335514|gb|EFM01778.1| recombination protein A [Prevotella marshii DSM 16973]
          Length = 349

 Score =  322 bits (826), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 210/332 (63%), Positives = 268/332 (80%), Gaps = 4/332 (1%)

Query: 4   RKEMNIVD--KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           ++E N V   K KAL+AA+S+I++ +GKGAIM+LG +    E +E + +GS+ LD ALG+
Sbjct: 5   KEETNNVQEGKLKALQAAMSKIEKDFGKGAIMKLGDKQ--IENVETIPTGSIALDYALGV 62

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+P+GRI+EIYGPESSGKTTLALH IA++QK GG  AF+DAEHA D  YA+KLGVD+ N
Sbjct: 63  GGYPRGRIIEIYGPESSGKTTLALHAIAETQKAGGIAAFIDAEHAFDRFYAQKLGVDVDN 122

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L ISQPD GEQAL+I + L+RS A+DIIVIDSVAALTP+ EIEGDMGES  G+ ARLMSQ
Sbjct: 123 LWISQPDNGEQALDIAEQLIRSAAIDIIVIDSVAALTPKKEIEGDMGESNVGLHARLMSQ 182

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLTS+IS++K   +FINQMR KIG+ FG+PETTTGG ALKFY+SVR+DIR+V SIKD
Sbjct: 183 ALRKLTSNISKTKTTCIFINQMREKIGISFGNPETTTGGLALKFYASVRMDIRKVTSIKD 242

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            D++TGN  RVKVVKNK+A PF++ EF+I +GEGIS  GELIDLGV   I+ KSG+W+S+
Sbjct: 243 GDTVTGNLVRVKVVKNKVAPPFRKAEFEITFGEGISKIGELIDLGVAQDIIQKSGSWYSY 302

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
              +LGQGR+ +K  L +N E+ E IE+ +++
Sbjct: 303 GSSKLGQGRDATKTLLSDNPELCEEIEARIKE 334


>gi|148879017|emb|CAM07024.1| RecA protein [Mycobacterium sp. MHSD2]
          Length = 288

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 188/286 (65%), Positives = 240/286 (83%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
             + + I V+ +GS+ LD+ALGIGG P+GR++EIYGPESSGKTT+ALH +A +Q+ GG  
Sbjct: 2   DEVRQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQRAGGIA 61

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AF+DAEHALD  YA+KLGVD  +LL+SQPDTGEQALEI DMLVRSGA+D+IVIDSVAAL 
Sbjct: 62  AFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAIDLIVIDSVAALV 121

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           PRAEIEG+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFGSPETTT
Sbjct: 122 PRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTT 181

Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISF 278
           GG ALKFYSSVRLD+RR+ ++KD     GN+TRVKVVKNK++ PFKQ EFDI+YG+GIS 
Sbjct: 182 GGKALKFYSSVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGKGISK 241

Query: 279 FGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
            G LID+GV+   + KSG+WF+++G++LGQG+EN++ FL EN+++A
Sbjct: 242 EGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGKENARNFLLENVDVA 287


>gi|13183726|gb|AAK15321.1|AF331800_1 RecA [Thermus thermophilus HB27]
          Length = 340

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 186/328 (56%), Positives = 250/328 (76%), Gaps = 3/328 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KALE AL  I++ +GKGA+M+LG      + ++V+ +GSL LD+ALGIGG P+GRIVE
Sbjct: 5   KRKALENALKAIEKEFGKGAVMRLGEMPK--QQVDVIPTGSLALDLALGIGGIPRGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPES GKTTL L  IAQ+Q+ GG  AFVDAEHALD +YA++LGV +++LL+SQPDTGE
Sbjct: 63  IYGPESGGKTTLGLTIIAQAQRRGGVAAFVDAEHALDPLYAQRLGVQVEDLLVSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI ++L RSGAVD+IV+DSVAAL PRAEIEG+MG+   G+QARLMSQALRKLT+ ++
Sbjct: 123 QALEIVELLARSGAVDVIVVDSVAALVPRAEIEGEMGDQHVGLQARLMSQALRKLTAVLA 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS-IKDKDSITGNQT 250
           +S    +FINQ+R K+GV +G+PETT GG ALKFY+SVRLD+R+ G  IK  +     + 
Sbjct: 183 KSNTAAIFINQVREKVGVTYGNPETTPGGRALKFYASVRLDVRKSGQPIKVGNEAVAVKV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++ E +I +G G+    +L+++ V A +++K+G+WFS+   RLGQG+
Sbjct: 243 RVKVVKNKLAPPFREAELEIYFGRGLDPVADLVNVAVAAGVIEKAGSWFSYGELRLGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338
           E +   LRE  E+ E I + + + AG V
Sbjct: 303 EKAAEALRERPELLEEIRTKVLERAGEV 330


>gi|89143243|emb|CAJ57516.1| recombinase A [Microbacterium flavescens]
          Length = 282

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 189/282 (67%), Positives = 231/282 (81%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +GS+ LD+ALGIGG P+GRI+EIYGPESSGKTTL LH IA  Q+ GG  AF+DAEHALD
Sbjct: 1   PTGSIALDVALGIGGLPRGRIIEIYGPESSGKTTLTLHAIANVQRAGGIAAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
             YA+KLGVD+ +LL+SQPDTGEQALEI DMLVRSGA+D++VIDSVAAL P+AEIEG+MG
Sbjct: 61  PDYAQKLGVDIDSLLVSQPDTGEQALEIADMLVRSGAIDLVVIDSVAALVPKAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRKLT  ++++   ++FINQ+R KIGV FGSPETT GG ALKFY+S
Sbjct: 121 DSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLREKIGVFFGSPETTAGGKALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           VRLDIRR+ ++KD     GN+TRVKVVKNKMA PFKQ EFDI+YG GIS  G LID GV+
Sbjct: 181 VRLDIRRIETLKDGTDAVGNRTRVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDFGVE 240

Query: 289 ASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
             IV KSGAW+++ G++LGQG+EN++ FL +N + A  IE  
Sbjct: 241 HGIVKKSGAWYTYDGEQLGQGKENARNFLIKNADTAAEIEKK 282


>gi|119358061|ref|YP_912705.1| recombinase A [Chlorobium phaeobacteroides DSM 266]
 gi|119355410|gb|ABL66281.1| recA protein [Chlorobium phaeobacteroides DSM 266]
          Length = 350

 Score =  322 bits (825), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 204/338 (60%), Positives = 260/338 (76%), Gaps = 6/338 (1%)

Query: 1   MDYRKEMNIVD-----KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGL 55
           MD  K     D     K K L  A+  I++ +GKGAIM+LG   +    ++ +S+GS+ L
Sbjct: 1   MDNIKTEQKSDLVDPAKLKQLNLAVDAIEKQFGKGAIMRLGDDSAGM-HVQAISTGSMTL 59

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D ALG+GG P+GR+ EIYGPESSGKTTLALH IA++QK GG  A VDAEHA D  YARKL
Sbjct: 60  DFALGVGGLPRGRVTEIYGPESSGKTTLALHVIAEAQKEGGIAAIVDAEHAFDPTYARKL 119

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+  LLISQP++GEQAL I + LVRSGAVD++V+DSVAAL P+AE+EG+MG+S+ G+Q
Sbjct: 120 GVDINALLISQPESGEQALTIVETLVRSGAVDVVVVDSVAALVPQAELEGEMGDSVMGLQ 179

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           ARLMSQALRKLT +IS+S  + +FINQ+R KIGVM+GSPETTTGG ALKFY+SVRLDIR+
Sbjct: 180 ARLMSQALRKLTGAISKSSTVCIFINQLRDKIGVMYGSPETTTGGKALKFYASVRLDIRK 239

Query: 236 VGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           +  IKD D I G++T+VKVVKNK+A PFK  EFDI+YGEGIS  GELIDL V+ ++V K+
Sbjct: 240 IAQIKDGDEIVGSRTKVKVVKNKVAPPFKTAEFDILYGEGISSMGELIDLAVEFAVVKKA 299

Query: 296 GAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           G+WFSF  ++LGQGRE  K  LRE+  + + I   +++
Sbjct: 300 GSWFSFGQEKLGQGREAVKKALREDHALFQQIYMQVKE 337


>gi|148879021|emb|CAM07026.1| RecA protein [Mycobacterium sp. MHSD4]
          Length = 286

 Score =  322 bits (825), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 186/285 (65%), Positives = 237/285 (83%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
             + + I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q  GG  
Sbjct: 2   EEVRQPISVIPTGSISLDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGIA 61

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AF+DAEHALD  YA+KLGVD  +LL+SQPDTGEQALEI DMLVRSGA+DI+VIDSVAAL 
Sbjct: 62  AFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDILVIDSVAALV 121

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           PRAEIEG+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFGSPETTT
Sbjct: 122 PRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTT 181

Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISF 278
           GG ALK Y+SVRLD+RR+ ++KD     GN+TRVKVVKNK++ PFKQ EFDI+YG+GIS 
Sbjct: 182 GGKALKXYASVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGQGISR 241

Query: 279 FGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
            G LID+GV+   + KSG+WF+++G++LGQG+EN++ FL EN+++
Sbjct: 242 EGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGKENARKFLLENVDV 286


>gi|148878987|emb|CAM07009.1| RecA protein [Mycobacterium sp. MG2]
          Length = 287

 Score =  322 bits (825), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 187/286 (65%), Positives = 238/286 (83%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
             + + I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q  GG  
Sbjct: 1   DEVRQPISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGIA 60

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AF+DAEHALD  YA+KLGVD  +LL+SQPDTGEQALEI DMLVRSGA+ ++VIDSVAAL 
Sbjct: 61  AFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAISLLVIDSVAALV 120

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           PRAEIEG+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFGSPETTT
Sbjct: 121 PRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTT 180

Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISF 278
           GG ALKFYSSVRLD+RR+ ++KD     GN+TRVKVVKNK++ PFKQ EFDI+YG+GIS 
Sbjct: 181 GGKALKFYSSVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGKGISK 240

Query: 279 FGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
            G LID+GV+   + KSG+WF+++G++LGQG+EN++ FL EN+++A
Sbjct: 241 EGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGKENARNFLLENVDVA 286


>gi|242038743|ref|XP_002466766.1| hypothetical protein SORBIDRAFT_01g013810 [Sorghum bicolor]
 gi|241920620|gb|EER93764.1| hypothetical protein SORBIDRAFT_01g013810 [Sorghum bicolor]
          Length = 415

 Score =  322 bits (825), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 179/335 (53%), Positives = 244/335 (72%), Gaps = 5/335 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +    +  +VD+ KAL+AA++ I   +GKG++ +LGS G  F  +E   SG L LD ALG
Sbjct: 55  LSGEDDPRLVDRQKALDAAMNDINSSFGKGSVTRLGSAGGAF--VETFPSGCLTLDFALG 112

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG PKGR+VE+YGPESSGKTTLALH IA+ QK GG    VDAEHA D  Y++ LGVD++
Sbjct: 113 -GGLPKGRVVEVYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDIE 171

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL++ QPD GE ALEI D + RSGA+D+I IDSV+ALTPRAEIEG++G    G+QARLMS
Sbjct: 172 NLIVCQPDNGEMALEIADRMCRSGAIDLICIDSVSALTPRAEIEGEIGMQQMGLQARLMS 231

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRK++ + S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++SVRL+IR +G IK
Sbjct: 232 QALRKMSGNASKAGCTLMFLNQIRYKIGVFYGNPEVTSGGIALKFFASVRLEIRPIGKIK 291

Query: 241 --DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
               D   G + RV+V K+K++ P+KQ EF+I++GEG+S  G ++D      +V K G+W
Sbjct: 292 SPKGDEDVGVKVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCVLDCAELMDVVAKKGSW 351

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           +S+K  RLGQGRE +  +LRE+  I + IE ++R 
Sbjct: 352 YSYKDIRLGQGREKALQYLRESPTICDEIEKVVRA 386


>gi|13249161|gb|AAK16709.1| RecA [Streptococcus agalactiae ATCC 13813]
          Length = 340

 Score =  322 bits (824), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 187/329 (56%), Positives = 248/329 (75%), Gaps = 7/329 (2%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG +    + ++V+SSGSL LDIALG GG+PKGRIVEIYGPESSGKTT+ALH +AQ+Q
Sbjct: 1   MRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIVEIYGPESSGKTTVALHAVAQAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG  AF+DAEHALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+D
Sbjct: 59  KEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQDLEIAGKLIDSGAVDLVVVD 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL PRAEI+GD+G+S  G+QAR+M QA+ KLT+SI+++K I +FINQ+R K+GVMFG
Sbjct: 119 SVAALVPRAEIDGDIGDSHVGLQARMMMQAMHKLTASINKTKTIAIFINQLREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEF 268
           +PETT GG ALKFYSSVRLD+R    IK     KD   G +T++KVVKNK+A PF++   
Sbjct: 179 NPETTPGGRALKFYSSVRLDVRGNTQIKGTGEHKDHNVGKETKIKVVKNKVAPPFREAFV 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           +IMYGEGIS  GELI +     I+ K+GAW+S+ G+++GQG EN+K +L +N  I + I+
Sbjct: 239 EIMYGEGISRTGELIKIASDLDIIQKAGAWYSYNGEKIGQGSENAKKYLADNPAIFDEID 298

Query: 329 SLLRQNAGLVA-DSLLQEPAINTKDDADK 356
             +R + G+   DS +Q   +  K++AD 
Sbjct: 299 HKVRVHFGMTEDDSPVQSELVEEKNEADD 327


>gi|71725937|gb|AAZ39086.1| homologous recombination protein [Exiguobacterium acetylicum]
          Length = 289

 Score =  322 bits (824), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 190/291 (65%), Positives = 240/291 (82%), Gaps = 2/291 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG      + + V+SSGS+ LDIALG GG+P+GR++E+YGPESSGKTT+
Sbjct: 1   EKQFGKGSIMKLGENAD--QKVSVISSGSITLDIALGAGGYPRGRVIEVYGPESSGKTTV 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALH IA+ QK GG  AF+DAEHALD  YA KLGV++  LL+SQPDTGEQALEI + LVRS
Sbjct: 59  ALHAIAEVQKQGGQAAFIDAEHALDPAYANKLGVNIDELLLSQPDTGEQALEIAEALVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVDI+V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ + ++SK I++FINQ+
Sbjct: 119 GAVDILVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGATNKSKTIVIFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           R KIGVMFG+PETT GG ALKFYSSVRL++RR  ++K+   + GN+T++KVVKNK+A PF
Sbjct: 179 REKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKNGTDVVGNKTKIKVVKNKIAPPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           KQ E DIMYG GIS  GELID+G    IV KSGAW+S+  +RLGQGREN+K
Sbjct: 239 KQAEVDIMYGLGISKVGELIDIGTDLDIVQKSGAWYSYNSERLGQGRENAK 289


>gi|55981787|ref|YP_145084.1| recombinase A [Thermus thermophilus HB8]
 gi|62287394|sp|Q5SHB2|RECA_THET8 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|1072968|pir||C55020 recombination protein recA - Thermus sp
 gi|458472|dbj|BAA04215.1| RecA protein [Thermus thermophilus]
 gi|55773200|dbj|BAD71641.1| RecA protein [Thermus thermophilus HB8]
          Length = 340

 Score =  322 bits (824), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 185/323 (57%), Positives = 249/323 (77%), Gaps = 3/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KALE AL  I++ +GKGA+M+LG      + ++V+ +GSL LD+ALGIGG P+GRIVE
Sbjct: 5   KRKALENALKAIEKEFGKGAVMRLGEMPK--QQVDVIPTGSLALDLALGIGGIPRGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPES GKTTLAL  IAQ+Q+ GG  AFVDAEHALD +YA++LGV +++LL+SQPDTGE
Sbjct: 63  IYGPESGGKTTLALTIIAQAQRRGGVAAFVDAEHALDPLYAQRLGVQVEDLLVSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI ++L RSGAVD+IV+DSVAAL PRAEIEG+MG+   G+QARLMSQALRKLT+ ++
Sbjct: 123 QALEIVELLARSGAVDVIVVDSVAALVPRAEIEGEMGDQHVGLQARLMSQALRKLTAVLA 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS-IKDKDSITGNQT 250
           +S    +FINQ+R K+GV +G+PETT GG ALKFY+SVRLD+R+ G  IK  +   G + 
Sbjct: 183 KSNTAAIFINQVREKVGVTYGNPETTPGGRALKFYASVRLDVRKSGQPIKVGNEAVGVKV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++ E +I +G G+    +L+++ V A +++K+G+WFS+   RLGQG+
Sbjct: 243 RVKVVKNKLAPPFREAELEIYFGRGLDPVADLVNVAVAAGVIEKAGSWFSYGELRLGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           E +   LRE  E+ E I + + +
Sbjct: 303 EKAAEALRERPELLEEIRAKVLE 325


>gi|296803008|gb|ADH51580.1| DNA recombinase [Burkholderia contaminans]
          Length = 285

 Score =  322 bits (824), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 208/284 (73%), Positives = 251/284 (88%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
             E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF
Sbjct: 1   ATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAF 60

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           +DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+
Sbjct: 61  IDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPK 120

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
           AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGG
Sbjct: 121 AEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGG 180

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           NALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  G
Sbjct: 181 NALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQG 240

Query: 281 ELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           E+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA
Sbjct: 241 EIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIA 284


>gi|157364891|ref|YP_001471658.1| recombinase A [Thermotoga lettingae TMO]
 gi|157315495|gb|ABV34594.1| recA protein [Thermotoga lettingae TMO]
          Length = 353

 Score =  322 bits (824), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 190/352 (53%), Positives = 253/352 (71%), Gaps = 6/352 (1%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E     K++ LE A+ +I+  +GKG+IM LG +  +   +EVV +GSL LD+A G+GG+P
Sbjct: 3   EKEQKAKAEVLEKAIKKIENSFGKGSIMILGEENQVA-PVEVVPTGSLSLDVATGVGGYP 61

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+EIYGPE+SGKTT++LH IA+ QK GG  A VDAEHALD +YA+ LGVDLK LLIS
Sbjct: 62  RGRIIEIYGPEASGKTTISLHAIAEVQKKGGIAAIVDAEHALDPVYAKALGVDLKTLLIS 121

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI D LVRS AVD+++IDSVAAL PR EIEG+MG+   G+QARLMSQALRK
Sbjct: 122 QPDYGEQALEIVDELVRSNAVDLVIIDSVAALVPRVEIEGNMGDLQVGLQARLMSQALRK 181

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           +  +++RSK I++F NQ+RMKIGVMFG+PETTTGG ALKFY+++R+++RR  SIK+   I
Sbjct: 182 IAGNVNRSKAIVIFTNQIRMKIGVMFGNPETTTGGLALKFYATMRIEVRRGESIKEGTEI 241

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF---- 301
            GN    KVVKNK+A PF++ EFDI+YG+GI    EL ++GV   ++ + G+WF +    
Sbjct: 242 IGNAVTAKVVKNKVAPPFRKAEFDIIYGKGIVKENELFNMGVSEGLIQRKGSWFFYMADD 301

Query: 302 -KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
            K   LGQG+ N   +  EN +IA  IE  +R    L  + L ++     + 
Sbjct: 302 GKEYSLGQGKNNVVNYFVENPQIANEIERKIRLKYNLPVEILEEKKQNGKEK 353


>gi|625663|pir||JX0292 recombination protein recA - Thermus aquaticus (strain HB8)
          Length = 340

 Score =  321 bits (823), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 184/323 (56%), Positives = 249/323 (77%), Gaps = 3/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KALE AL  I++ +GKGA+M+LG      + ++V+ +GSL LD+ALGIGG P+GRIVE
Sbjct: 5   KRKALENALKAIEKEFGKGAVMRLGEMPK--QQVDVIPTGSLALDLALGIGGIPRGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPES GKTTLAL  IAQ+Q+ GG  AFVDAEHALD +YA++LGV +++LL+SQP+TGE
Sbjct: 63  IYGPESGGKTTLALTIIAQAQRRGGVAAFVDAEHALDPLYAQRLGVQVEDLLVSQPETGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI ++L RSGAVD+IV+DSVAAL PRAEIEG+MG+   G+QARLMSQALRKLT+ ++
Sbjct: 123 QALEIVELLARSGAVDVIVVDSVAALVPRAEIEGEMGDQHVGLQARLMSQALRKLTAVLA 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS-IKDKDSITGNQT 250
           +S    +FINQ+R K+GV +G+PETT GG ALKFY+SVRLD+R+ G  IK  +   G + 
Sbjct: 183 KSNTAAIFINQVREKVGVTYGNPETTPGGRALKFYASVRLDVRKSGQPIKVGNEAVGVKV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++ E +I +G G+    +L+++ V A +++K+G+WFS+   RLGQG+
Sbjct: 243 RVKVVKNKLAPPFREAELEIYFGRGLDPVADLVNVAVAAGVIEKAGSWFSYGELRLGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           E +   LRE  E+ E I + + +
Sbjct: 303 EKAAEALRERPELLEEIRAKVLE 325


>gi|67809947|gb|AAY81982.1| recombinase A [Wolbachia pipientis]
          Length = 304

 Score =  321 bits (823), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 202/306 (66%), Positives = 257/306 (83%), Gaps = 2/306 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
               E    DK KAL+ A+SQI++ +GKGAIM+L  + +  E I+ +S+GS+ LD ALG+
Sbjct: 1   ASNPEERNSDKQKALDNAISQIEKAFGKGAIMKL--KQNPVEKIDTISTGSIALDSALGV 58

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG PKGRI+EI+GPESSGKTTLALH IA++QK GG+CAF+DAEHALD +YARKLGV   +
Sbjct: 59  GGLPKGRIIEIFGPESSGKTTLALHVIAEAQKKGGSCAFIDAEHALDVLYARKLGVSTDD 118

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L+ISQPDTGEQAL I + LV SGAVD+IVIDSVAALTPRAEIEGDMG+   G+QARL+S 
Sbjct: 119 LVISQPDTGEQALHIVEYLVCSGAVDVIVIDSVAALTPRAEIEGDMGDQHMGLQARLLSH 178

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
            LRKLTS++S++ CIL+FINQ+RMKIGV++G+PETTTGGNALKFY+SVRLDIR++G IKD
Sbjct: 179 GLRKLTSAVSKANCILIFINQIRMKIGVVYGNPETTTGGNALKFYTSVRLDIRKIGVIKD 238

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
           K++ITGN+TRVKVVKNK+A PF++ +FDIMY EGIS  GE+ID+G K  +++K+GA++S+
Sbjct: 239 KENITGNETRVKVVKNKVAPPFREAKFDIMYNEGISKLGEIIDMGAKLGVLEKAGAYYSY 298

Query: 302 KGQRLG 307
              RLG
Sbjct: 299 NNTRLG 304


>gi|71725929|gb|AAZ39082.1| homologous recombination protein [Exiguobacterium undae]
 gi|71725935|gb|AAZ39085.1| homologous recombination protein [Exiguobacterium undae]
          Length = 289

 Score =  321 bits (823), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 193/291 (66%), Positives = 242/291 (83%), Gaps = 2/291 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG      + + V+SSGS+ LDIALG GG+P+GR++E+YGPESSGKTT+
Sbjct: 1   EKQFGKGSIMKLGESAD--QRVSVISSGSITLDIALGAGGYPRGRVIEVYGPESSGKTTV 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALH IA+ QK GG  AF+DAEHALD  YA KLGV++  LL+SQPDTGEQALEI + LVRS
Sbjct: 59  ALHAIAEVQKQGGQAAFIDAEHALDPAYANKLGVNIDELLLSQPDTGEQALEIAEALVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVDI+V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ + ++SK I++FINQ+
Sbjct: 119 GAVDILVVDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLSGATNKSKTIVIFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           R KIGVMFG+PETT GG ALKFYSSVRL++RR  ++K+   I GN+T++KVVKNK+A PF
Sbjct: 179 REKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKNGTDIVGNRTKLKVVKNKIAPPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           KQ E DIMYG+GIS FGELID+G    IV KSGAW+S+  +RLGQGRENSK
Sbjct: 239 KQAEVDIMYGQGISKFGELIDIGTDLDIVQKSGAWYSYNSERLGQGRENSK 289


>gi|148879015|emb|CAM07023.1| RecA protein [Mycobacterium llatzerense]
          Length = 288

 Score =  321 bits (823), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 184/286 (64%), Positives = 233/286 (81%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
               + I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q  GG  
Sbjct: 2   DETRQPISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGIA 61

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AF+DAEHALD  YA+KLGVD   LL+SQPDTGEQALEI DMLVRSGA+DI+VIDSVAAL 
Sbjct: 62  AFIDAEHALDPDYAQKLGVDTDALLVSQPDTGEQALEIADMLVRSGAIDILVIDSVAALV 121

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           PRAEIEG+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFGSPETTT
Sbjct: 122 PRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTT 181

Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISF 278
           GG ALKFY+SVR+D+RR+ ++KD     GN+TR K+VKNK+A PFKQ EFDI+YG+GIS 
Sbjct: 182 GGKALKFYASVRIDVRRIETLKDGTDAVGNRTRAKIVKNKVAPPFKQAEFDILYGKGISK 241

Query: 279 FGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
            G LID+GV+   + KSG+WF++ G++LGQG+EN++ +L +N + A
Sbjct: 242 EGSLIDMGVEHGFIRKSGSWFTYDGEQLGQGKENARNYLLQNPDAA 287


>gi|11119177|gb|AAG30537.1|AF307982_1 RecA [Streptococcus agalactiae]
 gi|76562332|gb|ABA44916.1| recA protein [Streptococcus agalactiae A909]
          Length = 340

 Score =  321 bits (823), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 188/329 (57%), Positives = 250/329 (75%), Gaps = 7/329 (2%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG +    + ++V+SSGSL LDIALG GG+PKGRIVEIYGPESSGKTT+ALH +AQ+Q
Sbjct: 1   MRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIVEIYGPESSGKTTVALHAVAQAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG  AF+DAEHALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+D
Sbjct: 59  KEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVD 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG
Sbjct: 119 SVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEF 268
           +PETT GG ALKFYSSVRLD+R    IK     KD   G +T++KVVKNK+A PF++   
Sbjct: 179 NPETTPGGRALKFYSSVRLDVRGNTQIKGTGEHKDHNVGKETKIKVVKNKVAPPFREAFV 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           +IMYGEGIS  GELI +     I+ K+GAW+S+ G+++GQG EN+K +L +N  I + I+
Sbjct: 239 EIMYGEGISRTGELIKIASDLDIIQKAGAWYSYNGEKIGQGSENAKKYLADNPAIFDEID 298

Query: 329 SLLRQNAGLVA-DSLLQEPAINTKDDADK 356
             +R + G+   DS +Q   +  K++AD 
Sbjct: 299 HKVRVHFGMTEDDSPVQSELVEEKNEADD 327


>gi|71089158|gb|AAZ23657.1| RecA [uncultured Burkholderia sp.]
          Length = 288

 Score =  321 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 204/289 (70%), Positives = 252/289 (87%), Gaps = 1/289 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG++M+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGP+SSGKTT
Sbjct: 1   IEKQFGKGSVMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPKSSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LL+SQPDTGEQALEI D LVR
Sbjct: 60  LTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNELLVSQPDTGEQALEIADALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A P
Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPP 239

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G R+GQG++
Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYSGDRIGQGKD 288


>gi|71725927|gb|AAZ39081.1| homologous recombination protein [Exiguobacterium sibiricum]
          Length = 289

 Score =  321 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 193/291 (66%), Positives = 242/291 (83%), Gaps = 2/291 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG      + + V+SSGS+ LDIALG GG+P+GR++E+YGPESSGKTT+
Sbjct: 1   EKQFGKGSIMKLGESPD--QRVSVISSGSITLDIALGAGGYPRGRVIEVYGPESSGKTTV 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           +LH IA+ QK GG  AF+DAEHALD  YA KLGV++  LL+SQPDTGEQALEI + LVRS
Sbjct: 59  SLHAIAEVQKQGGQAAFIDAEHALDPAYASKLGVNIDELLLSQPDTGEQALEIAEALVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVDI+V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ + ++SK I++FINQ+
Sbjct: 119 GAVDILVVDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLSGATNKSKTIVIFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           R KIGVMFG+PETT GG ALKFYSSVRL++RR  ++K+   I GN+T++KVVKNK+A PF
Sbjct: 179 REKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKNGTDIVGNRTKLKVVKNKIAPPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
           KQ E DIMYG+GIS FGELIDLG    IV KSGAW+S+  +RLGQGRENSK
Sbjct: 239 KQAEVDIMYGQGISKFGELIDLGTDLDIVQKSGAWYSYNSERLGQGRENSK 289


>gi|189347607|ref|YP_001944136.1| recombinase A [Chlorobium limicola DSM 245]
 gi|238692194|sp|B3EGP4|RECA_CHLL2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|189341754|gb|ACD91157.1| recA protein [Chlorobium limicola DSM 245]
          Length = 350

 Score =  321 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 202/334 (60%), Positives = 264/334 (79%), Gaps = 3/334 (0%)

Query: 2   DYRKEMNIVD--KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIAL 59
           D  K+   +D  K K L  A+  +++ +GKGAIM+LG   ++ + ++ +S+GS+ LD AL
Sbjct: 7   DKEKKNEGIDPAKLKQLNLAVDALEKQFGKGAIMRLGDGSAVMQ-VQSISTGSMTLDFAL 65

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           G+GG P+GR+ EIYGPESSGKTTLALH IA++QK GG  A VDAEHA D  YARKLGVD+
Sbjct: 66  GVGGLPRGRVAEIYGPESSGKTTLALHVIAEAQKEGGIAAIVDAEHAFDPSYARKLGVDI 125

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
             LLISQP++GEQAL I + LVRSGAVD++V+DSVAAL P+AE+EG+MG+S+ G+QARLM
Sbjct: 126 NALLISQPESGEQALTIVETLVRSGAVDVVVVDSVAALVPQAELEGEMGDSVVGLQARLM 185

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           SQALRKLT +IS+S  + +FINQ+R KIGVM+GSPETTTGG ALKFY+S+RLDIR++  I
Sbjct: 186 SQALRKLTGAISKSSAVCIFINQLRDKIGVMYGSPETTTGGKALKFYASIRLDIRKIAQI 245

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           KD D I GN+T+VKVVKNK+A PFK  EFDI+YGEGIS  GEL+DL V+  +V KSG+WF
Sbjct: 246 KDGDEIVGNRTKVKVVKNKVAPPFKSAEFDILYGEGISAMGELVDLAVEFGVVKKSGSWF 305

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           SF  ++LGQGRE++K  LRE+  + + +   +R+
Sbjct: 306 SFGQEKLGQGRESAKKALREDHALFQQVYIQVRE 339


>gi|45825408|gb|AAS77553.1| RecA protein [Mesorhizobium sp. ICMP 14330]
          Length = 284

 Score =  321 bits (821), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 222/279 (79%), Positives = 257/279 (92%), Gaps = 1/279 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 3   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ISRS  +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+KD+D + GNQ
Sbjct: 182 ISRSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDRDEVVGNQ 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           TRVKVVKNK+A PFK VEFDIMYGEG+S  GEL+DLGVK
Sbjct: 242 TRVKVVKNKLAPPFKVVEFDIMYGEGVSKTGELVDLGVK 280


>gi|310819516|ref|YP_003951874.1| Recombinase A [Stigmatella aurantiaca DW4/3-1]
 gi|309392588|gb|ADO70047.1| Recombinase A [Stigmatella aurantiaca DW4/3-1]
          Length = 343

 Score =  321 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 199/324 (61%), Positives = 265/324 (81%), Gaps = 1/324 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
            + +K KA+ AA++ I++ +GKGA+M LG +    + + V++SGS+ LD ALG+GG+P+G
Sbjct: 3   KVAEKLKAVAAAVAAIEKQFGKGAVMALGGEAQE-QKVAVIASGSVSLDRALGVGGYPRG 61

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R+VE++G ESSGKT+L+LH IAQ Q +GG  AF+DAEHALD  YARKLGV ++ LLISQP
Sbjct: 62  RVVELFGNESSGKTSLSLHAIAQVQASGGVAAFIDAEHALDVNYARKLGVRVEELLISQP 121

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEIT+ LVRSGAVD+IV+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKLT
Sbjct: 122 DTGEQALEITEQLVRSGAVDLIVVDSVAALVPRAEIEGEMGDAHMGVQARLMSQALRKLT 181

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++SRS   ++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRL+IRR G++K+ +SI G
Sbjct: 182 GAVSRSGTCIIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLEIRRTGNLKEGESIIG 241

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
            + RVKVVKNK+A PF++ EFD++YG GI   GE++DLGV+   ++KSG+ FS +G+R+G
Sbjct: 242 TRARVKVVKNKLAPPFQEAEFDLLYGVGIHRAGEVLDLGVQLGFIEKSGSHFSLRGERIG 301

Query: 308 QGRENSKIFLRENIEIAENIESLL 331
           QGRE +  +LRE+ +  E + + L
Sbjct: 302 QGRERATDWLREHPQALEALATEL 325


>gi|116496076|ref|YP_807810.1| RecA/RadA recombinase [Lactobacillus casei ATCC 334]
 gi|116106226|gb|ABJ71368.1| RecA/RadA recombinase [Lactobacillus casei ATCC 334]
          Length = 397

 Score =  321 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 167/337 (49%), Positives = 249/337 (73%), Gaps = 6/337 (1%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +   + +  D+   LE AL +I++ +G+GA+M++G +  +   ++VVS+G L LD+ALG+
Sbjct: 9   NDNTKSDATDRDTQLEKALQKIKKAFGEGAVMKMGDRPEL--KVDVVSTGILSLDLALGV 66

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GRIVE+YGPES+GKTT+AL TIA+ QK+GG  A++DAE+A+D  YA +LGV++ +
Sbjct: 67  GGLPRGRIVEVYGPESTGKTTIALQTIAELQKSGGKAAYIDAENAMDPKYAAELGVNIDD 126

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQP++GEQ LEI +ML+ S AVDI+VIDSVAAL P+AEIEG +G+S  G+QARLMSQ
Sbjct: 127 LLLSQPNSGEQGLEIAEMLIESAAVDIVVIDSVAALVPKAEIEGAIGDSHVGLQARLMSQ 186

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRK+  SI+ +  +++FINQ+R K+GVMFG+PE T GG ALKFY+SVR++++R   +KD
Sbjct: 187 ALRKMAGSINNTNTLVIFINQLREKVGVMFGNPEVTPGGRALKFYASVRIEVKRGQQVKD 246

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA----SIVDKSGA 297
              + G  +++KV KNK+A PFK VE  + +G GI    ++I+L         ++ KSG+
Sbjct: 247 GKDVVGFASKLKVTKNKVAPPFKSVETTMSFGHGIEHNTDMINLATDKDNDIDVITKSGS 306

Query: 298 WFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
           W+++  +RLGQG  N+  +L E+ EI++ IE  +R+ 
Sbjct: 307 WYNYGKERLGQGLVNASHYLDEHPEISKEIEEKIREQ 343


>gi|257462503|ref|ZP_05626915.1| recombinase A [Fusobacterium sp. D12]
 gi|317060159|ref|ZP_07924644.1| recombinase A [Fusobacterium sp. D12]
 gi|313685835|gb|EFS22670.1| recombinase A [Fusobacterium sp. D12]
          Length = 356

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 189/355 (53%), Positives = 254/355 (71%), Gaps = 3/355 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
              K M +  K KALE A+ +I + +G+GAIM+LG    +   IEV+ +GSL LD ALG+
Sbjct: 4   AKEKTMELTAKQKALETAVKEITKDFGEGAIMKLGDNSHM--QIEVIPTGSLNLDAALGL 61

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GR+VEIYG ESSGKTT+ALH IA++QK GG  AF+DAEHALD +YA+ LGVD+  
Sbjct: 62  GGVPRGRVVEIYGAESSGKTTIALHIIAEAQKMGGIAAFIDAEHALDPVYAKALGVDIDE 121

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLI+QPD GEQAL+I D LVRSGA+D+IV+DSVAAL P+ EI+G+M +   G+QARLMS+
Sbjct: 122 LLIAQPDFGEQALDIADTLVRSGAIDVIVVDSVAALVPKVEIDGEMSDQQMGLQARLMSK 181

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           ALRKLT+++++SK  ++FINQ+R KIG   FG   TTTGG ALKFYSSVR++++R+ ++K
Sbjct: 182 ALRKLTATLNKSKTTMIFINQIREKIGGFGFGPQTTTTGGKALKFYSSVRMEVKRIAAVK 241

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             + + GN+T VKV KNK+A PFK+  F IMYG+GIS  GE++D+ +   IV KSGAWFS
Sbjct: 242 QGEDVIGNETVVKVTKNKIAPPFKEASFQIMYGKGISKVGEILDIALAKDIVAKSGAWFS 301

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           F   RLGQG+EN K  L E  ++   I   +++      + +L E         +
Sbjct: 302 FGEIRLGQGKENVKARLEEEKDLLNAIYDEIKKLEAPQEEGVLGEEREEISKVEE 356


>gi|115454275|ref|NP_001050738.1| Os03g0639700 [Oryza sativa Japonica Group]
 gi|108710024|gb|ABF97819.1| DNA repair protein recA, chloroplast precursor, putative, expressed
           [Oryza sativa Japonica Group]
 gi|113549209|dbj|BAF12652.1| Os03g0639700 [Oryza sativa Japonica Group]
 gi|215704578|dbj|BAG94211.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 418

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 178/335 (53%), Positives = 243/335 (72%), Gaps = 5/335 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +    +  ++D+ KAL+AA++ I   +GKG++ +LGS G  F  +E   SG L LD ALG
Sbjct: 59  LSGEDDPRLIDRQKALDAAMNDINSSFGKGSVTRLGSAGGAF--VETFPSGCLTLDFALG 116

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG PKGR+VE+YGPESSGKTTLALH IA+ QK GG    VDAEHA D  Y++ LGVD++
Sbjct: 117 -GGLPKGRVVEVYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDIE 175

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL++ QPD GE ALEI D + RSGA+D+I IDSV+ALTPRAEIEG++G    G+QARLMS
Sbjct: 176 NLIVCQPDNGEMALEIADRMCRSGAIDLICIDSVSALTPRAEIEGEIGMQQMGLQARLMS 235

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRK++ + S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++SVRL+IR +G IK
Sbjct: 236 QALRKMSGNASKAGCTLMFLNQIRYKIGVFYGNPEVTSGGIALKFFASVRLEIRPIGKIK 295

Query: 241 --DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
               D   G + RV+V K+K++ P+KQ EF+I++GEG+S  G ++D      +V K G+W
Sbjct: 296 SAKGDEDVGVKVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCVLDCAELMEVVAKKGSW 355

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           +S+K  RLGQGRE +  +LRE+  I + IE  +R 
Sbjct: 356 YSYKEMRLGQGREKALQYLRESPTICDEIEKAVRA 390


>gi|225851492|ref|YP_002731726.1| protein RecA [Persephonella marina EX-H1]
 gi|225644943|gb|ACO03129.1| protein RecA [Persephonella marina EX-H1]
          Length = 338

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 184/334 (55%), Positives = 258/334 (77%), Gaps = 3/334 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +   +  +  K KALE+AL+QI++ +GKG+IM L S+    + ++V+ SGSL LDIA GI
Sbjct: 3   EVLDQKELQAKKKALESALAQIEKKFGKGSIMTLSSEAE--KTVDVIPSGSLTLDIATGI 60

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG PKGR+VEIYGPESSGKTTL LH IA++QK GG   F+DAEHA D  YA+ +GV+L++
Sbjct: 61  GGVPKGRVVEIYGPESSGKTTLTLHIIAEAQKRGGKAVFIDAEHAFDPKYAKAIGVNLED 120

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           L+ISQPD GEQALEI + L+RSG +D+I+IDSVAAL P+AE+EGD+ +S  G+ ARLMS+
Sbjct: 121 LIISQPDYGEQALEIAETLIRSGVIDVIIIDSVAALVPKAELEGDIEDSNVGLHARLMSK 180

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+R L  ++++S   L+ INQ+R K+GVMFG+PETTTGG A+KF++ +RL++R+   IKD
Sbjct: 181 AMRVLKGAVNKSNTSLILINQIREKVGVMFGNPETTTGGRAIKFFADMRLEVRKKD-IKD 239

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
                G++ +VKVVKNK+A PFK+ EFD++YGEGIS  GEL+DLG +  I+ KSGAW+S+
Sbjct: 240 SGEKVGSRVKVKVVKNKLAPPFKEAEFDVIYGEGISKEGELLDLGEEIGIIKKSGAWYSY 299

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
              ++GQGRE ++ FL++N +IA+ IE+ +R+  
Sbjct: 300 GDSKIGQGREKAREFLKQNPDIAQEIENRIREEF 333


>gi|149200632|ref|ZP_01877635.1| recombinase A [Lentisphaera araneosa HTCC2155]
 gi|149136281|gb|EDM24731.1| recombinase A [Lentisphaera araneosa HTCC2155]
          Length = 347

 Score =  320 bits (819), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 173/350 (49%), Positives = 257/350 (73%), Gaps = 6/350 (1%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           +K+    D+ + L  A+SQI + +G GAIM+LG +      + V+S+G+L LD+ALG+ G
Sbjct: 3   KKDTEKTDRDRNLNLAISQINKEFGNGAIMKLGDKP--HSDVSVISTGALSLDMALGVYG 60

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P+GR+VEIYGPESSGKT++ LH +A +QK+GGTCAF+D EHALD  YAR +GV+ ++LL
Sbjct: 61  MPRGRVVEIYGPESSGKTSVCLHVVANAQKSGGTCAFIDTEHALDPQYARMIGVNTQDLL 120

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPD GE AL I   L+ S ++D++VIDSVAALTPRAE++G +G+S  G+QARLMS AL
Sbjct: 121 VSQPDCGEDALNIAQTLISSNSIDVLVIDSVAALTPRAELDGQIGDSHVGLQARLMSSAL 180

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-K 242
           R LT SI++++  L+F NQ+R KIGVM+G+PE T GG ALKFY+S+R++IRR  +I++  
Sbjct: 181 RSLTGSINKTRTCLIFTNQLREKIGVMYGNPEVTPGGKALKFYASIRMEIRRAAAIQNPA 240

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
             + GN+ +VK+VKNK+A PF++ EFDIMY EGIS  G ++D+ V+  I++K G+WFSF+
Sbjct: 241 GDVLGNRVKVKIVKNKIAPPFRKAEFDIMYNEGISRAGSILDVAVELDIINKKGSWFSFE 300

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           G++LGQGRE +K  ++ +  +   +   ++    ++ +    E  ++ +D
Sbjct: 301 GRQLGQGREQAKDAIKADEALESTVLDRVKT---ILKNDGAPEEEVSIED 347


>gi|148879023|emb|CAM07027.1| RecA protein [Mycobacterium sp. MHSD5]
 gi|148879025|emb|CAM07028.1| RecA protein [Mycobacterium sp. MHSD6]
          Length = 284

 Score =  320 bits (819), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 186/282 (65%), Positives = 234/282 (82%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
             + + I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q  GG  
Sbjct: 2   EEVRQPISVIPTGSISLDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGIA 61

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AF+DAEHALD  YA+KLGVD  +LL+SQPDTGEQALEI DMLVRSGA+DI+VIDSVAAL 
Sbjct: 62  AFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDILVIDSVAALV 121

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           PRAEIEG+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFGSPETTT
Sbjct: 122 PRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTT 181

Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISF 278
           GG ALKFY+SVRLD+RR+ ++KD     GN+TRVKVVKNK++ PFKQ EFDI+YG GIS 
Sbjct: 182 GGKALKFYASVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGHGISR 241

Query: 279 FGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
            G LID+GV+   + KSG+WF+++G++LGQG+EN++ F+ EN
Sbjct: 242 EGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGKENARKFMLEN 283


>gi|315225103|ref|ZP_07866920.1| recombination protein A [Capnocytophaga ochracea F0287]
 gi|314944786|gb|EFS96818.1| recombination protein A [Capnocytophaga ochracea F0287]
          Length = 389

 Score =  320 bits (819), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 218/384 (56%), Positives = 285/384 (74%), Gaps = 27/384 (7%)

Query: 3   YRKEMNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
             KEM++ + K +AL+  L ++ + YGKG +  LG      E +EV S+GS+GLD ALG+
Sbjct: 7   DNKEMSVEEAKKQALKLTLEKLDKTYGKGTVRALGDNP--VEDVEVYSTGSIGLDAALGV 64

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+PKGR++EIYGPESSGKTTL LH IA+ QK  GT AF+DAEHA D +YA++LGVD+KN
Sbjct: 65  GGYPKGRVIEIYGPESSGKTTLTLHAIAEVQKAKGTAAFIDAEHAFDPVYAQRLGVDVKN 124

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLI+QPD+GEQALEI D L+RS AVD++VIDSVAALTP+ EI+G+MG+S  G+ ARLMSQ
Sbjct: 125 LLITQPDSGEQALEIADALIRSNAVDLVVIDSVAALTPKGEIDGEMGDSKMGLHARLMSQ 184

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG---- 237
           ALRK+T SIS++KCI++FINQ+R KIG+ FG+PETTTGGNALKFY+SVR+DIR+ G    
Sbjct: 185 ALRKITGSISKAKCIVIFINQLRDKIGITFGNPETTTGGNALKFYASVRIDIRKDGGPQG 244

Query: 238 --SIKDKD-SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK 294
             +IKD +  I GN+T+VK+VKNK+ASPFK   FDIM+G GIS   EL++LGV+A IVDK
Sbjct: 245 SAAIKDSNGEIIGNKTKVKIVKNKVASPFKTATFDIMFGLGISKSAELLELGVEADIVDK 304

Query: 295 SGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ---NAGLVAD----------- 340
           SGA++S+KG RLGQGR+ S   L +N EIAE IE  LR+   +  L ++           
Sbjct: 305 SGAFYSYKGTRLGQGRDASIAMLNDNPEIAEQIEVELREWLKHNELSSNPKKGKKSTKAK 364

Query: 341 ---SLLQEPAINTKDDADKDDTDN 361
              ++  E +    D+AD  D D+
Sbjct: 365 DKKAVEPEYSEEEYDEADNYDEDD 388


>gi|258562191|gb|ACV81816.1| recombinase A [Burkholderia cenocepacia]
          Length = 297

 Score =  320 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 213/297 (71%), Positives = 259/297 (87%), Gaps = 1/297 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 2   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGR 60

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 61  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 121 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN
Sbjct: 181 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGN 240

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           +TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G++
Sbjct: 241 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEK 297


>gi|323128218|gb|ADX25515.1| recombinase A [Streptococcus dysgalactiae subsp. equisimilis ATCC
           12394]
          Length = 339

 Score =  320 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 185/328 (56%), Positives = 248/328 (75%), Gaps = 6/328 (1%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+Q
Sbjct: 1   MRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG  AF+DAEHALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+D
Sbjct: 59  KEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVD 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG
Sbjct: 119 SVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEF 268
           +PETT GG ALKFY+SVRLD+R    IK     KDS  G +T++KVVKNK+A PFK  E 
Sbjct: 179 NPETTPGGRALKFYASVRLDVRGTTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEV 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++GQG EN+K +L ++ E+ + I+
Sbjct: 239 EIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKIGQGSENAKRYLADHPELFDEID 298

Query: 329 SLLRQNAGLVADSLLQEPAINTKDDADK 356
             +R   GL+ +S  +       ++ D 
Sbjct: 299 RKVRVKFGLLEESEEESAMAVAAEETDD 326


>gi|322412850|gb|EFY03758.1| recombinase A [Streptococcus dysgalactiae subsp. dysgalactiae ATCC
           27957]
          Length = 339

 Score =  320 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 185/328 (56%), Positives = 249/328 (75%), Gaps = 6/328 (1%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+Q
Sbjct: 1   MRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG  AF+DAEHALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+D
Sbjct: 59  KEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVD 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG
Sbjct: 119 SVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEF 268
           +PETT GG ALKFY+SVRLD+R    IK     KDS  G +T++KVVKNK+A PFK  E 
Sbjct: 179 NPETTPGGRALKFYASVRLDVRGTTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEV 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G+++GQG EN+K +L ++ E+ + I+
Sbjct: 239 EIMYGEGISRTGELLKIASDLDIIQKAGAWFSYNGEKIGQGSENAKRYLADHPELFDEID 298

Query: 329 SLLRQNAGLVADSLLQEPAINTKDDADK 356
             +R   GL+ +S  +   +   ++ D 
Sbjct: 299 RKVRVKFGLLEESEEESAMVMATEETDD 326


>gi|149178836|ref|ZP_01857416.1| recombinase A [Planctomyces maris DSM 8797]
 gi|148842311|gb|EDL56694.1| recombinase A [Planctomyces maris DSM 8797]
          Length = 362

 Score =  319 bits (818), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 182/330 (55%), Positives = 255/330 (77%), Gaps = 2/330 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D    L+ AL QI++ +G+GAIM+L   G+    +  ++SG+L LD+ALG  GFP+GR
Sbjct: 19  TNDSEGMLKNALGQIEQAFGRGAIMKL--TGANARSVPSIASGALSLDLALGGAGFPRGR 76

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTTLALH IA +QK GG  AF+DAEHALD ++A+KLGV++  LL+SQP 
Sbjct: 77  IIELYGPESSGKTTLALHVIANAQKEGGIAAFIDAEHALDPVWAKKLGVNISELLVSQPT 136

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GE+ L+I +ML++S +VD+IV+DSVAAL P+AE++G++G++  G+QAR+MSQA+RKLT 
Sbjct: 137 YGEEGLQIAEMLIKSNSVDVIVVDSVAALVPKAELDGEIGDTHVGLQARMMSQAMRKLTG 196

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +IS+SK  ++FINQ+R KIGVMFGSPETT GG ALKFYSSVR+D+RR+ ++KD D++TG 
Sbjct: 197 AISKSKTTVIFINQIREKIGVMFGSPETTPGGRALKFYSSVRVDVRRIATLKDGDTVTGI 256

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           + + K+VKNK+A PF+  EFD++   GI++  +L+DL V+  IV KSG+WFS+   RLGQ
Sbjct: 257 RMKAKIVKNKIAPPFRIAEFDMLTTGGINYELDLLDLAVENKIVKKSGSWFSYGELRLGQ 316

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLV 338
           GR+ SK+ L EN +I E I+  +    G+V
Sbjct: 317 GRDKSKVVLEENPDICEEIKQKVLAAQGVV 346


>gi|218281452|ref|ZP_03487895.1| hypothetical protein EUBIFOR_00460 [Eubacterium biforme DSM 3989]
 gi|218217374|gb|EEC90912.1| hypothetical protein EUBIFOR_00460 [Eubacterium biforme DSM 3989]
          Length = 338

 Score =  319 bits (818), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 182/329 (55%), Positives = 259/329 (78%), Gaps = 2/329 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           KE    +K K L   L++I+R YGKG++M+LG + ++   IE + SGSL LD ALGIGG+
Sbjct: 3   KEKVETNKDKLLSDVLNEIEREYGKGSVMKLGDRAAV--DIEPIPSGSLLLDDALGIGGY 60

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EI+GPESSGKTTLALH +A+ QK GG  AF+DAE+A+D +YA+ LGV++  L++
Sbjct: 61  PKGRIIEIFGPESSGKTTLALHAVAEVQKKGGRAAFIDAENAIDPVYAKNLGVNIDELIL 120

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD+GEQ L+I  MLV SGAVD++V+DSVAAL P+AE++G+MG++  G+QAR+MS+A+R
Sbjct: 121 SQPDSGEQGLDIMLMLVESGAVDLVVVDSVAALVPQAELDGEMGDNQVGLQARMMSKAMR 180

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KL  +++++ C  +FINQ+R K+GV++G+PETT GG ALKFYSSVR+DIR+  +IK+   
Sbjct: 181 KLAGAMNQNDCTAIFINQLREKVGVIYGNPETTPGGRALKFYSSVRVDIRKADAIKNGTD 240

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           I GN+ +VK+VKNK+A PFK    +IMYGEGIS+  EL+DL V A+IV K+GAWFS++G+
Sbjct: 241 IVGNKVKVKIVKNKVAPPFKSAVLEIMYGEGISYISELLDLCVDANIVKKAGAWFSYEGE 300

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQ 333
           ++GQG+E +K +++ N E    +E  L++
Sbjct: 301 KIGQGKEAAKAYIKANPEFKSMLEEKLKE 329


>gi|308237909|emb|CBK52101.1| RecA protein [Acidithiobacillus ferrooxidans]
          Length = 279

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 203/277 (73%), Positives = 243/277 (87%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           LGLD+ALG+GG P+GR+VEIYGPESSGKTTL LH IA  Q  GGT AF+DAEHALD  YA
Sbjct: 1   LGLDLALGVGGLPRGRVVEIYGPESSGKTTLTLHAIASCQAAGGTAAFIDAEHALDPGYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            KLGVDL+NLLISQPDTGEQALEI DMLVRSGAVD+IVIDSVAALTP+AEIEGDMG+S  
Sbjct: 61  HKLGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGDMGDSHV 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QARLMSQALRKLT++ISR+  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLD
Sbjct: 121 GLQARLMSQALRKLTANISRTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLD 180

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           IRR+G+IK  D + GN TRVKVVKNK+A PF++ EF I YGEGIS   EL+DLGVK  IV
Sbjct: 181 IRRIGAIKKSDEVVGNDTRVKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVKFDIV 240

Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           +KSGAW+S++G+R+GQG++N++ +L+E+ E+A NIE 
Sbjct: 241 EKSGAWYSYQGERIGQGKDNARQYLKEHPELAANIEQ 277


>gi|149688800|gb|ABR27811.1| RecA [Candidatus Pelagibacter ubique]
          Length = 289

 Score =  319 bits (817), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 202/291 (69%), Positives = 254/291 (87%), Gaps = 2/291 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG + ++   +E +S+GSL LD+ALGIGG PKGR++E+YGPESSGKTTLAL  +
Sbjct: 1   KGSVMKLGQRRAM--DVESISTGSLSLDVALGIGGLPKGRVIEVYGPESSGKTTLALQVL 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAF+DAEHALD IYA+KLGVD + LLISQPDTGEQALEI D LV+SG++ +
Sbjct: 59  AEAQKAGGICAFIDAEHALDPIYAKKLGVDTEELLISQPDTGEQALEIADTLVKSGSISV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAALTPRAEIEG+MG+   G+Q+RLMSQALRKLT SIS +  +++FINQ+RMKIG
Sbjct: 119 IVIDSVAALTPRAEIEGEMGDHHVGLQSRLMSQALRKLTGSISSTNTMMIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFGSPETT+GGNALKFYSSVR+DIRR+G+IK+ D I GN TRVKVVKNK+A PFK VEF
Sbjct: 179 VMFGSPETTSGGNALKFYSSVRMDIRRIGAIKNGDEIIGNSTRVKVVKNKVAPPFKVVEF 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
           D+MYG+GIS  GEL+DLG KA IV+K+GAW+++KG+++GQGREN+K +L +
Sbjct: 239 DLMYGKGISKVGELVDLGSKADIVEKAGAWYAYKGEKIGQGRENAKTYLEQ 289


>gi|239630482|ref|ZP_04673513.1| RecA/RadA recombinase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301067634|ref|YP_003789657.1| recA/RadA recombinase [Lactobacillus casei str. Zhang]
 gi|239526765|gb|EEQ65766.1| RecA/RadA recombinase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300440041|gb|ADK19807.1| RecA/RadA recombinase [Lactobacillus casei str. Zhang]
          Length = 397

 Score =  319 bits (817), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 167/337 (49%), Positives = 249/337 (73%), Gaps = 6/337 (1%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +   + +  D+   LE AL +I++ +G+GA+M++G +  +   ++VVS+G L LD+ALG+
Sbjct: 9   NDNTKSDATDRDTELEKALQKIKKAFGEGAVMKMGDRPEL--KVDVVSTGILSLDLALGV 66

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GRIVE+YGPES+GKTT+AL TIA+ QK+GG  A++DAE+A+D  YA +LGV++ +
Sbjct: 67  GGLPRGRIVEVYGPESTGKTTIALQTIAELQKSGGKAAYIDAENAMDPKYAAELGVNIDD 126

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQP++GEQ LEI +ML+ S AVDI+VIDSVAAL P+AEIEG +G+S  G+QARLMSQ
Sbjct: 127 LLLSQPNSGEQGLEIAEMLIESAAVDIVVIDSVAALVPKAEIEGAIGDSHVGLQARLMSQ 186

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRK+  SI+ +  +++FINQ+R K+GVMFG+PE T GG ALKFY+SVR++++R   +KD
Sbjct: 187 ALRKMAGSINNTNTLVIFINQLREKVGVMFGNPEVTPGGRALKFYASVRIEVKRGQQVKD 246

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA----SIVDKSGA 297
              + G  +++KV KNK+A PFK VE  + +G GI    ++I+L         ++ KSG+
Sbjct: 247 GKDVVGFASKLKVTKNKVAPPFKSVETTMSFGHGIEHNTDMINLATDKDNDIDVITKSGS 306

Query: 298 WFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
           W+++  +RLGQG  N+  +L E+ EI++ IE  +R+ 
Sbjct: 307 WYNYGKERLGQGLVNASHYLDEHPEISKEIEEKIREQ 343


>gi|187918010|ref|YP_001883573.1| recombinase A [Borrelia hermsii DAH]
 gi|76363321|sp|Q8VS69|RECA_BORHE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|238689279|sp|B2RZJ7|RECA_BORHD RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|18034018|gb|AAL57321.1|AF395125_2 RecA [Borrelia hermsii]
 gi|119860858|gb|AAX16653.1| RecA protein [Borrelia hermsii DAH]
          Length = 356

 Score =  319 bits (817), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 182/326 (55%), Positives = 256/326 (78%), Gaps = 3/326 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +++ KA+E A  QI++ +GKG+++++G    + +GIE +SSGS+ LD A+G+GG+P+GRI
Sbjct: 16  LNREKAIELARVQIEKDFGKGSLIKMGE-SPVGKGIESISSGSILLDEAIGVGGYPRGRI 74

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD  YA+ LGV++  L ISQPDT
Sbjct: 75  IEIFGPESSGKTTLTLQAIAEVQKNGGIAAFIDAEHALDPAYAKALGVNIDELWISQPDT 134

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + L+RSG VD+IV+DSVAALTP+AEI+G+MG+S  G+QARLMS+ALRK+T  
Sbjct: 135 GEQALEIAEYLIRSGGVDLIVVDSVAALTPQAEIDGEMGDSQIGLQARLMSKALRKITGI 194

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--DSITG 247
           +S+S   ++FINQ+RMKIGVMFG+PETTTGGNALKFYSS+RL++R++  +     D I G
Sbjct: 195 LSKSNTCIMFINQLRMKIGVMFGNPETTTGGNALKFYSSLRLEVRKIDQVTGSSADDIVG 254

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+ R+KVVKNK+A PF++VE  I +G+GIS    ++D  VK +++ K+G+W+S    +LG
Sbjct: 255 NKIRIKVVKNKVAPPFRKVELVIYFGKGISREASILDASVKYNLIQKTGSWYSMGDDKLG 314

Query: 308 QGRENSKIFLRENIEIAENIESLLRQ 333
           QGRE++  +L +  E+ + +ES LR+
Sbjct: 315 QGREHAVSYLVKEKEVTDELESKLRK 340


>gi|262038532|ref|ZP_06011901.1| protein RecA [Leptotrichia goodfellowii F0264]
 gi|261747401|gb|EEY34871.1| protein RecA [Leptotrichia goodfellowii F0264]
          Length = 382

 Score =  319 bits (817), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 185/333 (55%), Positives = 252/333 (75%), Gaps = 5/333 (1%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +        +K + L  AL+QIQ+ +G+G+IM+LG    +   ++ +S+GS+ LD+ALGI
Sbjct: 9   EKDDNKVQSEKERVLNLALTQIQKEFGEGSIMKLGENQKM--NVKSISTGSINLDMALGI 66

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GRI+EIYG ESSGKTTLALH IA++QK GG  AF+DAEHALD +YA+ LGV++  
Sbjct: 67  GGVPRGRIIEIYGAESSGKTTLALHVIAEAQKEGGVAAFIDAEHALDPVYAKALGVNIDE 126

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLISQPDTGEQALEI DMLVRSGA+D+IV+DSVAAL P+AEIEG+MG+   G+QARLMS+
Sbjct: 127 LLISQPDTGEQALEIADMLVRSGAMDVIVVDSVAALVPKAEIEGEMGDQQMGLQARLMSK 186

Query: 182 ALRKLTSSISRSKCILVFINQMRMKI---GVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           ALRKLT++IS+S  +++FINQ+R KI       G   TT+GG ALKF+S+VR++++RVGS
Sbjct: 187 ALRKLTANISKSSTVMIFINQIREKIGGFSFTPGPQTTTSGGRALKFFSTVRMEVKRVGS 246

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           +K  + + GN+  VKV KNK+A PFK+  F++MYG GIS  GE++D  ++  +  KSGAW
Sbjct: 247 VKQGEEVIGNEVLVKVTKNKVAPPFKEARFNVMYGMGISRIGEILDAALELGVASKSGAW 306

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLL 331
           FS+  +RLGQGR N +  L+EN E+ E +E  +
Sbjct: 307 FSYGDERLGQGRVNVEKMLQENKELYERMEKDV 339


>gi|325266834|ref|ZP_08133505.1| recombination protein A [Kingella denitrificans ATCC 33394]
 gi|324981575|gb|EGC17216.1| recombination protein A [Kingella denitrificans ATCC 33394]
          Length = 371

 Score =  319 bits (817), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 199/331 (60%), Positives = 267/331 (80%), Gaps = 2/331 (0%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
            K     +++ AL+AAL+QI++ YGKGA++++       EG++V+S+GSL LD+ALG+GG
Sbjct: 12  NKPATEAERATALQAALAQIEKNYGKGAVIKM-DGSHQEEGLQVISTGSLTLDLALGVGG 70

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P+GRIVEIYG ESSGKTTL L +IAQ QK GGTCAF+DAEHA D +YAR+LGV+++ LL
Sbjct: 71  LPRGRIVEIYGAESSGKTTLCLESIAQCQKAGGTCAFIDAEHAFDPVYARQLGVEVEKLL 130

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPDTG+QALEI DMLVRSGAVD++VIDSVAAL P+AEIEG+MG+S  G+ ARLMSQAL
Sbjct: 131 VSQPDTGDQALEICDMLVRSGAVDMVVIDSVAALVPKAEIEGEMGDSHVGLHARLMSQAL 190

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK- 242
           RKL   I ++  + VFINQ RMKIGV +G+PETTTGGNALKFY+SVRL I     I++K 
Sbjct: 191 RKLAGHIKKTNTLAVFINQTRMKIGVSYGNPETTTGGNALKFYASVRLHISGTTKIENKA 250

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
             + G +T+VKVVKNK+A PF+  EFDIMYGEGIS+ GELID+GV+  ++ KSG+WFS++
Sbjct: 251 GDVLGKETKVKVVKNKVAPPFRTAEFDIMYGEGISWEGELIDVGVELDVIQKSGSWFSYE 310

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           G ++GQG++N + +L++N ++A+ I + +R+
Sbjct: 311 GNKIGQGKDNVRQWLKDNEDVAQEIANKIRE 341


>gi|149688786|gb|ABR27804.1| RecA [Candidatus Pelagibacter ubique]
 gi|149688788|gb|ABR27805.1| RecA [Candidatus Pelagibacter ubique]
 gi|149688792|gb|ABR27807.1| RecA [Candidatus Pelagibacter ubique]
 gi|149688796|gb|ABR27809.1| RecA [Candidatus Pelagibacter ubique]
          Length = 289

 Score =  319 bits (816), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 202/291 (69%), Positives = 254/291 (87%), Gaps = 2/291 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG + ++   +E +S+GSL LD+ALGIGG PKGR++E+YGPESSGKTTLAL  +
Sbjct: 1   KGSVMKLGQRRAM--DVESISTGSLSLDVALGIGGLPKGRVIEVYGPESSGKTTLALQVL 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAF+DAEHALD IYA+KLGVD + LLISQPDTGEQALEI D LV+SG++ +
Sbjct: 59  AEAQKAGGICAFIDAEHALDPIYAKKLGVDTEELLISQPDTGEQALEIADTLVKSGSISV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAALTPRAEIEG+MG+   G+Q+RLMSQALRKLT SIS +  +++FINQ+RMKIG
Sbjct: 119 IVIDSVAALTPRAEIEGEMGDHHVGLQSRLMSQALRKLTGSISSTNTMMIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFGSPETT+GGNALKFYSSVR+DIRR+G+IK+ D I GN TRVKVVKNK+A PFK VEF
Sbjct: 179 VMFGSPETTSGGNALKFYSSVRMDIRRIGAIKNGDEIIGNSTRVKVVKNKVAPPFKVVEF 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
           D+MYG+GIS  GEL+DLG KA IV+K+GAW+++KG+++GQGREN+K +L +
Sbjct: 239 DLMYGKGISKVGELVDLGAKADIVEKAGAWYAYKGEKIGQGRENAKTYLEQ 289


>gi|149688798|gb|ABR27810.1| RecA [Candidatus Pelagibacter ubique]
          Length = 289

 Score =  319 bits (816), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 203/291 (69%), Positives = 254/291 (87%), Gaps = 2/291 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG + ++   +E VS+GSL LD+ALGIGG PKGR++E+YGPESSGKTTLAL  +
Sbjct: 1   KGSVMKLGQRRAM--DVESVSTGSLSLDVALGIGGLPKGRVIEVYGPESSGKTTLALQVL 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAF+DAEHALD IYA+KLGVD + LLISQPDTGEQALEI D LV+SG++ +
Sbjct: 59  AEAQKAGGICAFIDAEHALDPIYAKKLGVDTEELLISQPDTGEQALEIADTLVKSGSISV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAALTPRAEIEG+MG+   G+Q+RLMSQALRKLT SIS +  +++FINQ+RMKIG
Sbjct: 119 IVIDSVAALTPRAEIEGEMGDHHVGLQSRLMSQALRKLTGSISSTNTMMIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFGSPETT+GGNALKFYSSVR+DIRR+G+IK+ D I GN TRVKVVKNK+A PFK VEF
Sbjct: 179 VMFGSPETTSGGNALKFYSSVRMDIRRIGAIKNGDEIIGNSTRVKVVKNKVAPPFKVVEF 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
           D+MYG+GIS  GEL+DLG KA IV+K+GAW+++KG+++GQGREN+K +L +
Sbjct: 239 DLMYGKGISKVGELVDLGAKADIVEKAGAWYAYKGEKIGQGRENAKTYLEQ 289


>gi|257466664|ref|ZP_05630975.1| recombinase A [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917818|ref|ZP_07914058.1| recombinase A [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691693|gb|EFS28528.1| recombinase A [Fusobacterium gonidiaformans ATCC 25563]
          Length = 359

 Score =  319 bits (816), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 190/354 (53%), Positives = 254/354 (71%), Gaps = 3/354 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
              K + +  K KALE A+ +I + +G+GAIM+LG    +   IEV+ +GSL LD ALG+
Sbjct: 4   AKEKTVELTAKQKALETAVKEITKDFGEGAIMKLGDNSHM--QIEVIPTGSLNLDAALGL 61

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GR+VEIYG ESSGKTT+ALH IA++QK GG  AF+DAEHALD +YA+ LGVD+  
Sbjct: 62  GGVPRGRVVEIYGAESSGKTTIALHIIAEAQKMGGIAAFIDAEHALDPVYAKALGVDIDE 121

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLISQPD GEQAL+I D LVRSGA+D+IV+DSVAAL P+ EI+G+M +   G+QARLMS+
Sbjct: 122 LLISQPDFGEQALDIADTLVRSGAIDVIVVDSVAALVPKVEIDGEMSDQQMGLQARLMSK 181

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           ALRKLT+++++SK  ++FINQ+R KIG   FG   TTTGG ALKFYSSVR++++R+ S+K
Sbjct: 182 ALRKLTATLNKSKTTMIFINQIREKIGGFGFGPQTTTTGGKALKFYSSVRMEVKRIASVK 241

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             D + GN+T VKV KNK+A PFK+  F IMYG+GIS  GE++D+ +   IV KSGAWFS
Sbjct: 242 QGDDVIGNETVVKVTKNKIAPPFKEASFQIMYGKGISKVGEILDIALAKDIVAKSGAWFS 301

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           F   RLGQG+EN K  L E  ++   I   +++    V + +        + + 
Sbjct: 302 FGEIRLGQGKENVKARLEEESDLLNAIYEEIKKLEAPVEEEIKTGLFGEEESEE 355


>gi|257452956|ref|ZP_05618255.1| recombinase A [Fusobacterium sp. 3_1_5R]
 gi|317059497|ref|ZP_07923982.1| recombinase A [Fusobacterium sp. 3_1_5R]
 gi|313685173|gb|EFS22008.1| recombinase A [Fusobacterium sp. 3_1_5R]
          Length = 359

 Score =  319 bits (816), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 189/354 (53%), Positives = 254/354 (71%), Gaps = 3/354 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
              K + +  K KALE A+ +I + +G+GAIM+LG    +   IEV+ +GSL LD ALG+
Sbjct: 4   AKEKTVELTAKQKALETAVKEITKDFGEGAIMKLGDNSHM--QIEVIPTGSLNLDAALGL 61

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GR+VEIYG ESSGKTT+ALH IA++QK GG  AF+DAEHALD +YA+ LGVD+  
Sbjct: 62  GGVPRGRVVEIYGAESSGKTTIALHIIAEAQKMGGIAAFIDAEHALDPVYAKALGVDIDE 121

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLISQPD GEQAL+I D LVRSGA+D+IV+DSVAAL P+ EI+G+M +   G+QARLMS+
Sbjct: 122 LLISQPDFGEQALDIADTLVRSGAIDVIVVDSVAALVPKVEIDGEMSDQQMGLQARLMSK 181

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           ALRKLT+++++SK  ++FINQ+R KIG   FG   TTTGG ALKFYSSVR++++R+ S+K
Sbjct: 182 ALRKLTATLNKSKTTMIFINQIREKIGSFGFGPQTTTTGGKALKFYSSVRMEVKRIASVK 241

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             D + GN+T VKV KNK+A PFK+  F IMYG+GIS  GE++D+ +   IV KSGAWFS
Sbjct: 242 QGDDVIGNETVVKVTKNKIAPPFKEASFQIMYGKGISKVGEILDIALAKDIVAKSGAWFS 301

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           F   RLGQG+EN K  L E  ++   I   +++    + + +        + + 
Sbjct: 302 FGEIRLGQGKENVKARLEEESDLLNAIYEEIKKLEAPIEEEIKTGLFGEEESEE 355


>gi|149688784|gb|ABR27803.1| RecA [Candidatus Pelagibacter ubique HTCC1002]
          Length = 289

 Score =  319 bits (816), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 203/291 (69%), Positives = 255/291 (87%), Gaps = 2/291 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG + ++   +E +S+GSL LD+ALGIGG PKGR++E+YGPESSGKTTLAL  +
Sbjct: 1   KGSVMKLGQRRAM--DVESISTGSLSLDVALGIGGLPKGRVIEVYGPESSGKTTLALQVL 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAF+DAEHALD IYA+KLGVD + LLISQPDTGEQALEI D LV+SG++ +
Sbjct: 59  AEAQKAGGICAFIDAEHALDPIYAKKLGVDTEELLISQPDTGEQALEIADTLVKSGSISV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAALTPRAEIEG+MG+   G+Q+RLMSQALRKLT SIS +  +++FINQ+RMKIG
Sbjct: 119 IVIDSVAALTPRAEIEGEMGDHHVGLQSRLMSQALRKLTGSISSTNTMMIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFGSPETT+GGNALKFYSSVR+DIRR+G+IK+ D I GN TRVKVVKNK+A PFK VEF
Sbjct: 179 VMFGSPETTSGGNALKFYSSVRMDIRRIGAIKNGDEIIGNSTRVKVVKNKVAPPFKVVEF 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
           D+MYG+GIS  GEL+DLG KA IV+K+GAW+++KG+++GQGREN+KI+L +
Sbjct: 239 DLMYGKGISKVGELVDLGAKADIVEKAGAWYAYKGEKIGQGRENAKIYLEQ 289


>gi|62297620|sp|P61501|RECA_THETH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|414555|gb|AAA64935.1| RecA protein [Thermus thermophilus]
          Length = 340

 Score =  319 bits (816), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 184/323 (56%), Positives = 248/323 (76%), Gaps = 3/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KALE AL  I++ +GKGA+M+LG      + ++V+ +GSL LD+ALGIGG P+GRIVE
Sbjct: 5   KRKALENALKAIEKEFGKGAVMRLGEMPK--QQVDVIPTGSLALDLALGIGGIPRGRIVE 62

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPES GKTTLAL  IAQ+Q+ GG  AFVDAEHALD +YA++LGV +++LL+SQPDTGE
Sbjct: 63  IYGPESGGKTTLALTIIAQAQRRGGVAAFVDAEHALDPLYAQRLGVQVEDLLVSQPDTGE 122

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI ++L RSGAVD+IV+DSVAAL P AEIEG+MG+   G+QARLMSQALRKLT+ ++
Sbjct: 123 QALEIVELLARSGAVDVIVVDSVAALVPGAEIEGEMGDQHVGLQARLMSQALRKLTAVLA 182

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS-IKDKDSITGNQT 250
           +S    +FINQ+R K+GV +G+PETT GG ALKFY+SVRLD+R+ G  IK  +   G + 
Sbjct: 183 KSNTAAIFINQVREKVGVTYGNPETTPGGRALKFYASVRLDVRKSGQPIKVGNEAVGVKV 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PF++ E +I +G G+    +L+++ V A +++K+G+WFS+   RLGQG+
Sbjct: 243 RVKVVKNKLAPPFREAELEIYFGRGLDPVADLVNVAVAAGVIEKAGSWFSYGELRLGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQ 333
           E +   LRE  E+ E I + + +
Sbjct: 303 EKAAEALRERPELLEEIRAKVLE 325


>gi|149688790|gb|ABR27806.1| RecA [Candidatus Pelagibacter ubique]
          Length = 289

 Score =  318 bits (815), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 201/291 (69%), Positives = 254/291 (87%), Gaps = 2/291 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG + ++   +E +S+GSL LD+ALGIGG PKGR++E+YGPESSGKTTLAL  +
Sbjct: 1   KGSVMKLGQRRAM--DVESISTGSLSLDVALGIGGLPKGRVIEVYGPESSGKTTLALQVL 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAF+DAEHALD IYA+KLGVD + LLISQPDTGEQALEI D LV+SG++ +
Sbjct: 59  AEAQKAGGICAFIDAEHALDPIYAKKLGVDTEELLISQPDTGEQALEIADTLVKSGSISV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAALTPRAEIEG+MG+   G+Q+RLMSQALRKLT SIS +  +++FINQ+RMKIG
Sbjct: 119 IVIDSVAALTPRAEIEGEMGDHHVGLQSRLMSQALRKLTGSISSTNTMMIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFGSPETT+GGNALKFYSSVR+DIRR+G+IK+ + I GN TRVKVVKNK+A PFK VEF
Sbjct: 179 VMFGSPETTSGGNALKFYSSVRMDIRRIGAIKNGEEIIGNSTRVKVVKNKVAPPFKVVEF 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
           D+MYG+GIS  GEL+DLG KA IV+K+GAW+++KG+++GQGREN+K +L +
Sbjct: 239 DLMYGKGISKVGELVDLGAKADIVEKAGAWYAYKGEKIGQGRENAKTYLEQ 289


>gi|256819642|ref|YP_003140921.1| recA protein [Capnocytophaga ochracea DSM 7271]
 gi|256581225|gb|ACU92360.1| recA protein [Capnocytophaga ochracea DSM 7271]
          Length = 389

 Score =  318 bits (815), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 217/384 (56%), Positives = 284/384 (73%), Gaps = 27/384 (7%)

Query: 3   YRKEMNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
             KEM++ + K +AL+  L ++ + YGKG +  LG      E +EV S+GS+GLD ALG+
Sbjct: 7   DNKEMSVEEAKKQALKLTLEKLDKTYGKGTVRALGDNP--VEDVEVYSTGSIGLDAALGV 64

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+PKGR++EIYGPESSGKTTL LH IA+ QK  GT AF+DAEHA D +YA++LGVD+KN
Sbjct: 65  GGYPKGRVIEIYGPESSGKTTLTLHAIAEVQKAKGTAAFIDAEHAFDPVYAQRLGVDVKN 124

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLI+QPD+GEQALEI D L+RS AVD++VIDSVAALTP+ EI+G+MG+S  G+ ARLMSQ
Sbjct: 125 LLITQPDSGEQALEIADALIRSNAVDLVVIDSVAALTPKGEIDGEMGDSKMGLHARLMSQ 184

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG---- 237
           ALRK+T SIS++KCI++FINQ+R KIG+ FG+PETTTGGNALKFY+SVR+DIR+ G    
Sbjct: 185 ALRKITGSISKAKCIVIFINQLRDKIGITFGNPETTTGGNALKFYASVRIDIRKDGGPQG 244

Query: 238 --SIKDKD-SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK 294
             +IKD +  I GN+T+VK+VKNK+ASPFK   FDIM+G GIS   EL++LGV+A IVDK
Sbjct: 245 SAAIKDSNGEIIGNKTKVKIVKNKVASPFKTATFDIMFGLGISKSAELLELGVEADIVDK 304

Query: 295 SGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ---NAGLVADS---------- 341
           SGA++S+KG RLGQGR+ S   L +N EIAE IE  LR+   +  L ++           
Sbjct: 305 SGAFYSYKGTRLGQGRDASIAMLNDNPEIAEQIEVELREWLKHNELSSNPKKGKKSTKAK 364

Query: 342 ----LLQEPAINTKDDADKDDTDN 361
               +  E +    D+AD  D ++
Sbjct: 365 DKKVVEPEYSEEEYDEADTYDEED 388


>gi|257126448|ref|YP_003164562.1| recombinase A [Leptotrichia buccalis C-1013-b]
 gi|257050387|gb|ACV39571.1| recA protein [Leptotrichia buccalis C-1013-b]
          Length = 370

 Score =  318 bits (815), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 191/334 (57%), Positives = 254/334 (76%), Gaps = 5/334 (1%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           + +  + +K K L+ AL QIQ+ YG+GA+M+LG    +   I  +S+GSL LDIALGIGG
Sbjct: 11  KDDKGLTEKEKMLDLALKQIQKDYGEGAVMKLGENQKM--NIRAISTGSLNLDIALGIGG 68

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P+GRIVEIYG ESSGKTTLALH IA++QK GG  AF+DAEHALD +YA+ LGV++  LL
Sbjct: 69  VPRGRIVEIYGAESSGKTTLALHIIAEAQKAGGVVAFIDAEHALDPVYAKALGVNIDELL 128

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           ISQPDTGEQALEI+DMLVRSGA+D+IV+DSVAAL P+AEIEG+MG+   G+QARLMS+AL
Sbjct: 129 ISQPDTGEQALEISDMLVRSGAIDVIVVDSVAALVPKAEIEGEMGDQQMGLQARLMSKAL 188

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVM---FGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           RKLT +I++S  +++FINQ+R KIG      G   TT+GG ALKF+S+VR++++RVGS+K
Sbjct: 189 RKLTGNIAKSDTVMIFINQIREKIGGFSFVPGVQTTTSGGRALKFFSTVRMEVKRVGSVK 248

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             D + G++  VKV KNK+A PFK+ +F+IMYG GIS  GE++D  +   I  K+GAWFS
Sbjct: 249 QGDDVIGSEVLVKVTKNKVAPPFKEAKFNIMYGTGISKIGEILDAAINLGIASKAGAWFS 308

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
           +  +RLGQGR N +  L+EN E+   +E  + + 
Sbjct: 309 YGDERLGQGRVNVERMLKENTELYGRLEKDVLEA 342


>gi|149688794|gb|ABR27808.1| RecA [Candidatus Pelagibacter ubique]
          Length = 289

 Score =  318 bits (815), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 203/291 (69%), Positives = 254/291 (87%), Gaps = 2/291 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG + ++   +E VS+GSL LD+ALGIGG PKGR++E+YGPESSGKTTLAL  +
Sbjct: 1   KGSVMKLGQRRAM--DVESVSTGSLSLDVALGIGGLPKGRVIEVYGPESSGKTTLALQVL 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAF+DAEHALD IYA+KLGVD + LLISQPDTGEQALEI D LV+SG++ +
Sbjct: 59  AEAQKAGGICAFIDAEHALDPIYAKKLGVDTEELLISQPDTGEQALEIADTLVKSGSISV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAALTPRAEIEG+MG+   G+Q+RLMSQALRKLT SIS +  +++FINQ+RMKIG
Sbjct: 119 IVIDSVAALTPRAEIEGEMGDHHVGLQSRLMSQALRKLTGSISSTNTMMIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFGSPETT+GGNALKFYSSVR+DIRR+G+IK+ D I GN TRVKVVKNK+A PFK VEF
Sbjct: 179 VMFGSPETTSGGNALKFYSSVRMDIRRIGAIKNGDEIIGNSTRVKVVKNKVAPPFKVVEF 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
           D+MYG+GIS  GEL+DLG KA IV+K+GAW+++KG+++GQGREN+K +L +
Sbjct: 239 DLMYGKGISKVGELVDLGAKADIVEKAGAWYAYKGEKIGQGRENAKXYLEQ 289


>gi|9309338|dbj|BAB03233.1| homologous recombination factor RecA [Streptococcus suis]
          Length = 343

 Score =  318 bits (815), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 184/332 (55%), Positives = 249/332 (75%), Gaps = 6/332 (1%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG +    + ++V+SSGSL +DIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+Q
Sbjct: 1   MRLGERAE--QKVQVMSSGSLSIDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG  AF+DAEHALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+D
Sbjct: 59  KDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVD 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +SI+++K + +FINQ+R K+GVMFG
Sbjct: 119 SVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEF 268
           +PETT GG ALKFY+SVR+D+R    IK     KD   G +T+VK+VKNK+A PFK+   
Sbjct: 179 NPETTPGGRALKFYASVRMDVRGNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEAVV 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           +IMYGEGIS  GELI++G    I+ K+GAW+S+ G+++GQG EN+K FL +N  I + I+
Sbjct: 239 EIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKIGQGSENAKKFLADNPAIFDEID 298

Query: 329 SLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
             +R + GL+    ++E A        ++  D
Sbjct: 299 RKIRVHYGLIEADGVEEVATEEAPVVAEEIQD 330


>gi|119494626|ref|ZP_01624747.1| recombination protein [Lyngbya sp. PCC 8106]
 gi|119452050|gb|EAW33267.1| recombination protein [Lyngbya sp. PCC 8106]
          Length = 331

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 184/328 (56%), Positives = 243/328 (74%), Gaps = 5/328 (1%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG    +   +E + SG+L LD+ALG GG PKGR++EIYGPESSGKTTLALH IA+ Q+
Sbjct: 2   RLGDAPRM--KVETIPSGALTLDLALG-GGIPKGRVIEIYGPESSGKTTLALHAIAEVQR 58

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG  AFVDAEHALD  YA  LGVD++NLL+SQPDTGE ALE+ D LVRS AVDI+VIDS
Sbjct: 59  AGGVAAFVDAEHALDPSYASVLGVDIENLLVSQPDTGEMALEVVDQLVRSVAVDIVVIDS 118

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           VAAL PRAEIEG+MG++  G+QARLMSQALRK+T +I +S C ++F+NQ+R KIG+ +G+
Sbjct: 119 VAALVPRAEIEGEMGDAHMGLQARLMSQALRKITGNIGKSGCTVIFLNQLRQKIGITYGN 178

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PETTTGGNALKFY SVRLDIRR+ ++K      G + +VKV KNK+A PF+  EFDI++G
Sbjct: 179 PETTTGGNALKFYCSVRLDIRRIQTLKKGTDEYGIRAKVKVAKNKVAPPFRIAEFDIIFG 238

Query: 274 EGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           +GIS  G L+DL  +  I+ + G+W+S+    +GQGRE + I++ EN E   NIE L+R+
Sbjct: 239 KGISTLGCLVDLAEETGIIKRKGSWYSYNSDNIGQGREKTIIYMEENPEFTANIEKLVRE 298

Query: 334 NAGLVADSLLQEPAINTKDDADKDDTDN 361
              L   +++   ++   DDA+  + D 
Sbjct: 299 K--LDGGAVVSSNSVGHVDDAEDYENDE 324


>gi|326336627|ref|ZP_08202795.1| recombination protein A [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325691097|gb|EGD33068.1| recombination protein A [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 382

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 203/339 (59%), Positives = 261/339 (76%), Gaps = 6/339 (1%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
            + +GKG +M+LG +  + E +EV+ SGSLGLDIALG+GG+P+GRI+EI+G ESSGKTTL
Sbjct: 30  DKTFGKGTVMRLGDK--VAEKVEVIPSGSLGLDIALGVGGYPRGRIIEIFGQESSGKTTL 87

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            LH IA++QK GG+ AF+DAEHA D  YA+K+G+D+ NL+ISQPD GEQALEI D L+RS
Sbjct: 88  TLHAIAEAQKKGGSAAFIDAEHAFDPGYAKKIGIDIDNLIISQPDNGEQALEIVDNLIRS 147

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVDIIV+DSVAALTP+ EIEGDMGES  G+ ARLMSQALRK+T SISR+ C+++FINQ+
Sbjct: 148 GAVDIIVVDSVAALTPKVEIEGDMGESKMGVHARLMSQALRKITGSISRANCVVMFINQL 207

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV-GSIKDKD-SITGNQTRVKVVKNKMAS 261
           R KIGV FG+PETTTGGNALKFY+SVR+D+RR    +K+K+    G+ TRVKVVKNK+A 
Sbjct: 208 REKIGVSFGNPETTTGGNALKFYASVRVDVRRQPSPLKNKEGEAYGSLTRVKVVKNKVAP 267

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PF+  EF+I+YGEGIS  GE+ID G    I+ KSGAW+S+ G RL QGRE  K  L +N 
Sbjct: 268 PFQNTEFEIIYGEGISKTGEIIDWGTDYDILSKSGAWYSYGGTRLAQGREAMKTVLLDNP 327

Query: 322 EIAENIESLLRQNA--GLVADSLLQEPAINTKDDADKDD 358
           E+AE IE+ +++    G V      +    +KD  D+ +
Sbjct: 328 EMAEEIENKIKEAVREGKVVVKKKTKTKSKSKDQEDESE 366


>gi|191639560|ref|YP_001988726.1| Protein recA [Lactobacillus casei BL23]
 gi|190713862|emb|CAQ67868.1| Protein recA [Lactobacillus casei BL23]
 gi|327383665|gb|AEA55141.1| RecA protein [Lactobacillus casei LC2W]
 gi|327386858|gb|AEA58332.1| RecA protein [Lactobacillus casei BD-II]
          Length = 397

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 167/337 (49%), Positives = 249/337 (73%), Gaps = 6/337 (1%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +   + +  D+   LE AL +I++ +G+GA+M++G +  +   ++VVS+G L LD+ALG+
Sbjct: 9   NDNTKSDATDRDTELEKALQKIKKAFGEGAVMKMGDRPEL--KVDVVSTGILSLDLALGV 66

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GRIVE+YGPES+GKTT+AL TIA+ QK+GG  A++DAE+A+D  YA +LGV++ +
Sbjct: 67  GGLPRGRIVEVYGPESTGKTTIALQTIAELQKSGGKAAYIDAENAMDPKYAAELGVNIDD 126

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQP++GEQ LEI +ML+ S AVDI+VIDSVAAL P+AEIEG +G+S  G+QARLMSQ
Sbjct: 127 LLLSQPNSGEQGLEIAEMLIESAAVDIVVIDSVAALVPKAEIEGAIGDSHVGLQARLMSQ 186

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRK+  SI+ +  +++FINQ+R K+GVMFG+PE T GG ALKFY+SVR++++R   +KD
Sbjct: 187 ALRKMAGSINNTNTLVIFINQLREKVGVMFGNPEVTPGGRALKFYASVRIEVKRGQQVKD 246

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA----SIVDKSGA 297
              + G  +++KV KNK+A PFK VE  + +G GI    ++I+L         ++ KSG+
Sbjct: 247 GKDVVGFASKLKVTKNKVAPPFKSVETTMSFGHGIEHNTDMINLATDKDNDIDVITKSGS 306

Query: 298 WFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
           W+++  +RLGQG  N+  +L E+ EI++ IE  +R+ 
Sbjct: 307 WYNYGKERLGQGLVNASHYLDEHPEISKEIEEKIREQ 343


>gi|94986237|ref|YP_605601.1| recombinase A [Deinococcus geothermalis DSM 11300]
 gi|123079824|sp|Q1IWF2|RECA_DEIGD RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|94556518|gb|ABF46432.1| recA protein [Deinococcus geothermalis DSM 11300]
 gi|148829212|gb|ABR14040.1| RecA [Deinococcus geothermalis]
          Length = 358

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 186/353 (52%), Positives = 261/353 (73%), Gaps = 3/353 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           D+    +  ++ KA+E A++QI++ +GKG+IM+LG++  +   ++ VS+GSL LD+ALG+
Sbjct: 8   DFGTPSDSKERLKAIETAMTQIEKAFGKGSIMRLGAESKL--DVQAVSTGSLSLDLALGV 65

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GRI EIYGPES GKTTLAL  IAQ+Q+ GGTCAF+DAEHALD +YAR LGV+   
Sbjct: 66  GGIPRGRITEIYGPESGGKTTLALSVIAQAQRAGGTCAFIDAEHALDPVYARSLGVNTDE 125

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPD GEQALEI ++LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQ
Sbjct: 126 LLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQ 185

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS-IK 240
           ALRKLT+ +S++    +FINQ+R KIGVM+G+PETTTGG ALKFY+SVRLD+R++G  +K
Sbjct: 186 ALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIGQPVK 245

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             +   GN  +VK VKNK+A PFK+VE  ++YG+G     +L+ L     I+ K+G+++S
Sbjct: 246 LGNDAVGNTVKVKTVKNKVAPPFKEVELTLLYGKGFDQLSDLVTLAADMDIIKKAGSFYS 305

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           +  +R+GQG+E +  ++ E  E+ + I   +        D +   P      +
Sbjct: 306 YGEERIGQGKEKAIAYIAERPELEQEIRDRVLAAIKEGRDPIAAVPETPALAE 358


>gi|182412708|ref|YP_001817774.1| recA protein [Opitutus terrae PB90-1]
 gi|177839922|gb|ACB74174.1| recA protein [Opitutus terrae PB90-1]
          Length = 356

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 177/321 (55%), Positives = 246/321 (76%), Gaps = 3/321 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + K L+ A+S I + +G+G+IM+LG  G+    +E +S+GSL +D+ALG+GG PKGRIVE
Sbjct: 18  RDKNLDLAVSAITKQFGEGSIMRLG--GATRMKVETLSTGSLAIDLALGVGGLPKGRIVE 75

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT  L  IA++Q+ GG  AF+D EHALD  YAR +GV+L +LL+SQPD+GE
Sbjct: 76  IYGPESSGKTTFCLSVIAEAQRRGGLAAFIDVEHALDPKYARVVGVNLDDLLVSQPDSGE 135

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
            AL I + L+RS ++D+IV+DSVAAL  +AE++G MG+   G QARLMSQA+R+LT+ +S
Sbjct: 136 DALNIMETLIRSNSIDVIVLDSVAALITKAELDGQMGDLTMGSQARLMSQAMRRLTAVVS 195

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSITGNQT 250
           ++ C+ +F NQ+R KIGVMFG+PETT+GG ALKF+SSVR+DIRR   IK  +  + GN+T
Sbjct: 196 KTACVCIFTNQIREKIGVMFGNPETTSGGRALKFFSSVRIDIRRKDQIKTPEGKVIGNRT 255

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF + EFDIMY EGIS  G L+DLG++  I++K GAW +++G  +GQGR
Sbjct: 256 KIKVVKNKVAPPFTECEFDIMYDEGISRSGSLLDLGLERKILEKKGAWIAYEGALIGQGR 315

Query: 311 ENSKIFLRENIEIAENIESLL 331
           + +K  ++E  E+AE I   +
Sbjct: 316 DAAKAAIKEKPELAEKITQAI 336


>gi|224115208|ref|XP_002332188.1| predicted protein [Populus trichocarpa]
 gi|222875295|gb|EEF12426.1| predicted protein [Populus trichocarpa]
          Length = 387

 Score =  317 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 178/325 (54%), Positives = 237/325 (72%), Gaps = 5/325 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK KALEAA++ I   +GKG++ +LGS G     +E   SG L LD ALG GG PKGRI
Sbjct: 53  LDKQKALEAAMNDINNSFGKGSVTRLGSAGGAL--VETFPSGCLTLDFALG-GGLPKGRI 109

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEI+GPESSGKTTLALH IA+ QK GG    VDAEHA D  Y++ LGVD++NL++ QPD 
Sbjct: 110 VEIFGPESSGKTTLALHAIAEVQKFGGHAMLVDAEHAFDPAYSKALGVDVENLIVCQPDN 169

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GE ALEI D + RSGAVD+I +DSV+ALTPRAEIEG++G    G+QARLMSQALRK++ +
Sbjct: 170 GEMALEIADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGN 229

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK--DKDSITG 247
            S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++SVRL+IR  G IK    D   G
Sbjct: 230 ASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVG 289

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
            + RV+V K+K++ P+KQ EF+I++GEG+S  G ++D      +V K G+W+S+   RLG
Sbjct: 290 VRVRVRVQKSKVSRPYKQAEFEIIFGEGVSQLGCILDCAEMMDVVVKKGSWYSYGDHRLG 349

Query: 308 QGRENSKIFLRENIEIAENIESLLR 332
           QGR+ +  +LR+N  + E IE  +R
Sbjct: 350 QGRDKALQYLRDNPHLQEEIEKKVR 374


>gi|310815944|ref|YP_003963908.1| recombinase A [Ketogulonicigenium vulgare Y25]
 gi|308754679|gb|ADO42608.1| recombinase A [Ketogulonicigenium vulgare Y25]
          Length = 300

 Score =  317 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 207/279 (74%), Positives = 243/279 (87%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           +GIGG PKGRI+EI+GPESSGKTTL LH +A+ QK GG CAFVDAEHALD  YA+KLGV+
Sbjct: 1   MGIGGLPKGRIIEIFGPESSGKTTLTLHAVAEEQKKGGVCAFVDAEHALDPSYAKKLGVN 60

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           L  LLISQPDTGEQALEI D LVRSGAV ++V+DSVAALTP++EIEGDMG+S  G+ ARL
Sbjct: 61  LDELLISQPDTGEQALEIVDTLVRSGAVSMVVVDSVAALTPKSEIEGDMGDSSVGVHARL 120

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQA+RKLT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+
Sbjct: 121 MSQAMRKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGA 180

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IKD+D + GN TRVKVVKNK+A PFKQVEFDIMYGEGIS  GE+IDLGVKA +V+KSG+W
Sbjct: 181 IKDRDEVVGNSTRVKVVKNKVAPPFKQVEFDIMYGEGISKRGEIIDLGVKAGVVEKSGSW 240

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           FS+  QR+GQGREN+K FLR+N  I++ IE  +R   GL
Sbjct: 241 FSYGDQRIGQGRENAKQFLRDNPAISDEIEGKIRAMNGL 279


>gi|218193384|gb|EEC75811.1| hypothetical protein OsI_12760 [Oryza sativa Indica Group]
 gi|222625431|gb|EEE59563.1| hypothetical protein OsJ_11852 [Oryza sativa Japonica Group]
          Length = 436

 Score =  317 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 179/331 (54%), Positives = 239/331 (72%), Gaps = 5/331 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
             MN     KAL+AA++ I   +GKG++ +LGS G  F  +E   SG L LD ALG GG 
Sbjct: 81  TNMNNNVMQKALDAAMNDINSSFGKGSVTRLGSAGGAF--VETFPSGCLTLDFALG-GGL 137

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGR+VE+YGPESSGKTTLALH IA+ QK GG    VDAEHA D  Y++ LGVD++NL++
Sbjct: 138 PKGRVVEVYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDIENLIV 197

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
            QPD GE ALEI D + RSGA+D+I IDSV+ALTPRAEIEG++G    G+QARLMSQALR
Sbjct: 198 CQPDNGEMALEIADRMCRSGAIDLICIDSVSALTPRAEIEGEIGMQQMGLQARLMSQALR 257

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK--DK 242
           K++ + S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++SVRL+IR +G IK    
Sbjct: 258 KMSGNASKAGCTLMFLNQIRYKIGVFYGNPEVTSGGIALKFFASVRLEIRPIGKIKSAKG 317

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           D   G + RV+V K+K++ P+KQ EF+I++GEG+S  G ++D      +V K G+W+S+K
Sbjct: 318 DEDVGVKVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCVLDCAELMEVVAKKGSWYSYK 377

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
             RLGQGRE +  +LRE+  I + IE  +R 
Sbjct: 378 EMRLGQGREKALQYLRESPTICDEIEKAVRA 408


>gi|227513196|ref|ZP_03943245.1| recombination protein A [Lactobacillus buchneri ATCC 11577]
 gi|227083577|gb|EEI18889.1| recombination protein A [Lactobacillus buchneri ATCC 11577]
          Length = 360

 Score =  317 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 177/341 (51%), Positives = 247/341 (72%), Gaps = 13/341 (3%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I + +GKGAIM++G + +    IE++S+G L +DIALG+GG P+GR+ EI+GPESSGKTT
Sbjct: 31  IDKEFGKGAIMRMGDKANT--NIEILSTGVLSVDIALGVGGLPRGRVTEIFGPESSGKTT 88

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LAL  +A++QK G T A++DAE+ALD  YA+ LGV+L  LLISQP  GE+ LEI + LV 
Sbjct: 89  LALQAVAEAQKNGFTAAYIDAENALDPSYAKNLGVNLDELLISQPGGGEEGLEIANKLVE 148

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVDI+VIDSVAAL P+AEIEG++G++  G+QARLMSQALRK+TS+I ++  +++FINQ
Sbjct: 149 SGAVDIVVIDSVAALVPKAEIEGEIGDNHVGLQARLMSQALRKMTSAIYQNHVVVIFINQ 208

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +R K+GVMFGSPETT GG ALKFY+SVRLDIRR  ++KD     GN  R+KVVKNK+ASP
Sbjct: 209 LREKVGVMFGSPETTPGGRALKFYASVRLDIRRTQAVKDGKEQIGNGVRIKVVKNKVASP 268

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVK--ASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
           FK+VE  + YG GI    +++ + V     ++ KSG+W+S+  +R+GQG  N+  +L  +
Sbjct: 269 FKKVETVMSYGYGIRKNDDMLAIAVDAPYEVIKKSGSWYSYADERIGQGANNAARYLDSH 328

Query: 321 IEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
             +A  IE  +R          +  P I + +D + ++ +N
Sbjct: 329 PTMANEIEQKIRD---------IAFPKIISAEDKENNEQNN 360


>gi|294785811|ref|ZP_06751099.1| protein RecA [Fusobacterium sp. 3_1_27]
 gi|294487525|gb|EFG34887.1| protein RecA [Fusobacterium sp. 3_1_27]
          Length = 377

 Score =  317 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 193/376 (51%), Positives = 265/376 (70%), Gaps = 15/376 (3%)

Query: 1   MDYRKEMNIVD--------KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGS 52
           M  +K+ N+ D        K KA++ A++ I + +G G IM+LG + S+   +E + +GS
Sbjct: 1   MAAKKDKNVPDTKITDKEGKEKAVKDAMASITKDFGAGLIMKLGEKSSM--NVESIPTGS 58

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           + LDIALGIGG PKGRI+E+YG ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA
Sbjct: 59  INLDIALGIGGVPKGRIIEVYGAESSGKTTLALHIIAEAQKQGGTVAFIDAEHALDPVYA 118

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           + L VD+  LLISQPD GEQALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M +   
Sbjct: 119 KALCVDIDELLISQPDYGEQALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQM 178

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QARLMS+ LRKLT ++++ K  ++FINQ+R KIGV +G   TTTGG ALKFYSSVR++
Sbjct: 179 GLQARLMSKGLRKLTGNLNKYKTTMIFINQIREKIGVSYGPTTTTTGGKALKFYSSVRME 238

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           ++++G++K  D   G++  VKV KNK+A PFK+  F+I+YG+GIS  GE+ID  V   ++
Sbjct: 239 VKKMGTVKQGDDPIGSEVIVKVTKNKVAPPFKEAAFEILYGKGISKIGEIIDAAVARDVI 298

Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNA--GLVADSLLQEPAINT 350
            K+G+WFSF+ Q +GQG+E  +  L  N E+   +E+ L++    G V     +      
Sbjct: 299 VKAGSWFSFRDQSIGQGKEKVRAELETNPELLAQVEADLKEAIAKGPVDKKKKKSKKEVA 358

Query: 351 KDDADKD---DTDNVE 363
            DD D++   D D VE
Sbjct: 359 SDDTDENNEVDDDAVE 374


>gi|307702751|ref|ZP_07639703.1| protein RecA [Streptococcus oralis ATCC 35037]
 gi|307623867|gb|EFO02852.1| protein RecA [Streptococcus oralis ATCC 35037]
          Length = 342

 Score =  317 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 185/334 (55%), Positives = 253/334 (75%), Gaps = 6/334 (1%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+Q
Sbjct: 1   MRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG  AF+DAEHALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++VID
Sbjct: 59  KEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG
Sbjct: 119 SVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEF 268
           +PETT GG ALKFY+SVRLD+R    IK     KD+  G +T++KVVKNK+A PFK+   
Sbjct: 179 NPETTPGGRALKFYASVRLDVRGSTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAFV 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           +IMYGEGIS  GEL+ +     I+ K+GAW+S+KG+++GQG EN+K +L ++ EI + I+
Sbjct: 239 EIMYGEGISKTGELLKIASDLDIIQKAGAWYSYKGEKIGQGSENAKKYLADHPEIFDAID 298

Query: 329 SLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
             +R   GL+ D    + +   +  ++++ T ++
Sbjct: 299 HQVRVQYGLIEDEEASDHSPVAEATSNQEVTLDL 332


>gi|148879009|emb|CAM07020.1| RecA protein [Mycobacterium llatzerense]
          Length = 282

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 184/284 (64%), Positives = 233/284 (82%), Gaps = 2/284 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG +    + I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q 
Sbjct: 1   RLGDETR--QPISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQA 58

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG  AF+DAEHALD  YA+KLGVD   LL+SQPDTGEQALEI DMLVRSGA+DI+VIDS
Sbjct: 59  AGGIAAFIDAEHALDPDYAQKLGVDTDALLVSQPDTGEQALEIADMLVRSGAIDILVIDS 118

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           VAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFGS
Sbjct: 119 VAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGS 178

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PETTTGG ALKFY+SVR+D+RR+ ++KD     GN+TR K+VKNK+A PFKQ EFDI+YG
Sbjct: 179 PETTTGGKALKFYASVRIDVRRIETLKDGTDAVGNRTRAKIVKNKVAPPFKQAEFDILYG 238

Query: 274 EGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317
           +GIS  G LID+GV+   + KSG+WF++ G++LGQG+EN++ +L
Sbjct: 239 KGISKEGSLIDMGVEHGFIRKSGSWFTYDGEQLGQGKENARNYL 282


>gi|329767009|ref|ZP_08258537.1| RecA protein [Gemella haemolysans M341]
 gi|328837734|gb|EGF87359.1| RecA protein [Gemella haemolysans M341]
          Length = 379

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 198/355 (55%), Positives = 257/355 (72%), Gaps = 12/355 (3%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  A+  A+  I++ YGKGAIM + S+  I   +E VSSGSL +D ALGIGG+PKGRIVE
Sbjct: 21  RQAAINEAIKVIEKEYGKGAIMDISSENPI--KVEAVSSGSLAIDSALGIGGYPKGRIVE 78

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN--LLISQPDT 129
           +YGPESSGKTT+ALH IA+ QKTGG  AF+DAE+ALD  YA+ LGVD       +SQPD+
Sbjct: 79  VYGPESSGKTTIALHAIAEVQKTGGIAAFIDAENALDIEYAKALGVDFTPGKFFLSQPDS 138

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQAL+I + L+ SGA+DIIVIDSVAAL P+AEI+G MG +  G+QARLMSQALRKLT  
Sbjct: 139 GEQALDIAEKLILSGAIDIIVIDSVAALVPKAEIDGVMGANHIGLQARLMSQALRKLTGQ 198

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSITGN 248
           I+++  I +FINQ+R K+GVMFGSPE TTGG ALKFYS+VR+D+R+  +IK     I GN
Sbjct: 199 INKANTIALFINQLREKVGVMFGSPEVTTGGRALKFYSTVRIDVRKGEAIKGADSEILGN 258

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++K+VKNK+A PFK  E DIM+GEGIS  GE +D  V   I++KSG+WFS+ G+RLGQ
Sbjct: 259 RTKIKIVKNKVAPPFKIAEVDIMFGEGISKIGETLDFAVDLDIINKSGSWFSYNGERLGQ 318

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           GREN K    EN E+   I        GLV + ++ +    T    + D+ D+++
Sbjct: 319 GRENVKKVFEENEELYNEI-------YGLVREEMMNKTGKKTDSIVENDENDDID 366


>gi|226356955|ref|YP_002786695.1| recombinase A [Deinococcus deserti VCD115]
 gi|226318945|gb|ACO46941.1| Protein RecA (recombinase A) [Deinococcus deserti VCD115]
          Length = 355

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 191/354 (53%), Positives = 265/354 (74%), Gaps = 7/354 (1%)

Query: 2   DYRKEMNIV----DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDI 57
           D  KE++      +++KA+E A+SQI++ +GKG+IM+LG++  +   ++ VS+GSL LD+
Sbjct: 4   DSTKELSAPTDARERTKAIETAMSQIEKAFGKGSIMKLGAESKL--DVQSVSTGSLSLDL 61

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALGIGG P+GR+ EIYGPES GKTTLAL  +AQ+QK GGTCAF+DAEHALD +YAR LGV
Sbjct: 62  ALGIGGIPRGRVTEIYGPESGGKTTLALSIVAQAQKAGGTCAFIDAEHALDPVYARALGV 121

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           +   LL+SQPD GEQALEI ++LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QAR
Sbjct: 122 NTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGEMGDSLPGLQAR 181

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           LMSQALRKLT+ +S++    +FINQ+R KIGVM+G+PETTTGG ALKFY+SVRLD+R++G
Sbjct: 182 LMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIG 241

Query: 238 S-IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
             +K  +   GN  +VK VKNK+A PFK+VE  +MYG+G     +L+ L     I+ K+G
Sbjct: 242 QPVKLGNDAVGNTVKVKSVKNKVAPPFKEVELTLMYGKGFDQLSDLVTLASDMDIIKKAG 301

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           +++S+  +R+GQG+E +  ++ E  E+ + I   +       A     +PA+  
Sbjct: 302 SFYSYGDERIGQGKEKAIAYIAERPEMEQEIRDRVLNAIRGGASEQPTKPALAE 355


>gi|134122760|dbj|BAF49678.1| RecA [Physcomitrella patens]
          Length = 460

 Score =  316 bits (809), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 180/326 (55%), Positives = 239/326 (73%), Gaps = 5/326 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VD+ KALEAA+S I   +GKG++ +LGS G     +E   SG L LD+ALG GGFPKGRI
Sbjct: 98  VDRQKALEAAMSDINGSFGKGSVTRLGSAGGAL--VETFPSGCLTLDLALG-GGFPKGRI 154

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEI+GPESSGKTTLALH IA+ QK GG    VDAEH  D  Y++ LGVD+++L++ QPD 
Sbjct: 155 VEIFGPESSGKTTLALHAIAEIQKKGGNAMLVDAEHCFDPYYSKALGVDVESLIVCQPDN 214

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GE ALE  D + RSGAVDIIVIDSV+ALTPRAEIEG++G    G+QARLMSQALRK++++
Sbjct: 215 GEMALETADRMCRSGAVDIIVIDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSAN 274

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD--KDSITG 247
            +R+ C ++F+NQ+R KI VM+G+PE T+GG ALKF++S+RLDIR  G IK    +   G
Sbjct: 275 AARANCTIIFLNQIRYKIAVMYGNPEVTSGGLALKFFASLRLDIRNTGKIKSPRGEDDIG 334

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
            + RV+V K+K++ P+KQ EFDI++GEGI   G L+D      +V + GAW+S+   RLG
Sbjct: 335 IRARVRVQKSKVSRPYKQAEFDIIFGEGICKLGSLLDSAETVGVVVRKGAWYSYGETRLG 394

Query: 308 QGRENSKIFLRENIEIAENIESLLRQ 333
           QGR+    FLR+  E+  +IE ++R+
Sbjct: 395 QGRDKVVQFLRDYPEVCADIEKVVRE 420


>gi|195953745|ref|YP_002122035.1| recombinase A [Hydrogenobaculum sp. Y04AAS1]
 gi|195933357|gb|ACG58057.1| recA protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 352

 Score =  316 bits (809), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 167/324 (51%), Positives = 242/324 (74%), Gaps = 1/324 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KALEA L+Q+++ YGKGA+M + +     + + V+ +G L +D A G+GG P+G+I+
Sbjct: 4   EKKKALEATLTQVEKKYGKGAVMPMKAAYE-KQTVNVIPTGILSVDKASGVGGLPRGKII 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPES+GKTTLAL+ IA++QK GG   F+DAEHALD  YA KLGV+L  + ISQPD G
Sbjct: 63  EIFGPESAGKTTLALYAIAEAQKQGGIALFIDAEHALDPKYAVKLGVNLDAMYISQPDYG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D  + S  VDIIV+DSVAAL P+ E+EG+MG++  G QARLMSQALRKL  + 
Sbjct: 123 EQALEIADAFINSNTVDIIVVDSVAALVPKDELEGEMGDAQVGKQARLMSQALRKLKGAT 182

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++S   L+FINQ+R KIG M+G+PETT GG ALKF++ +RL++R+ G IK  D+  G   
Sbjct: 183 NKSNTTLIFINQIREKIGQMYGNPETTPGGRALKFFADMRLEVRKTGDIKSGDNKIGYSA 242

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +V+VVKNK+A PF++ E+++ +GEG+    +L+++ ++  I+ KSG+W+S++  ++GQG+
Sbjct: 243 KVRVVKNKVAPPFQEGEYEVYFGEGVCKICDLVNVAIEMGIIQKSGSWYSYQDTKIGQGK 302

Query: 311 ENSKIFLRENIEIAENIESLLRQN 334
           E  K FL EN ++A+ IE+ +RQ 
Sbjct: 303 EQVKTFLNENKDVAKGIETKIRQA 326


>gi|226533038|ref|NP_001148809.1| protein recA [Zea mays]
 gi|195622282|gb|ACG32971.1| protein recA [Zea mays]
 gi|238008650|gb|ACR35360.1| unknown [Zea mays]
          Length = 415

 Score =  316 bits (808), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 177/335 (52%), Positives = 242/335 (72%), Gaps = 5/335 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +    +  +VD+ K L+AA++ I   +GKG++ +LGS G  F  +E   SG L LD ALG
Sbjct: 55  LSGEDDPRLVDRQKVLDAAMNDINNSFGKGSVTRLGSAGGAF--VETFPSGCLTLDFALG 112

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG PKGR+VE+YGPESSGKTTLALH IA+ QK GG    VDAEHA D  Y++ LGVD++
Sbjct: 113 -GGLPKGRVVEVYGPESSGKTTLALHAIAEIQKLGGNAMLVDAEHAFDPAYSKALGVDIE 171

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL++ QPD GE ALEI D + RSGA+D+I IDSV+ALTPRAEIEG++G    G+QARLMS
Sbjct: 172 NLIVCQPDNGEMALEIADRMCRSGAIDLICIDSVSALTPRAEIEGEIGMQQMGLQARLMS 231

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRK++ + S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++SVRL+IR +G IK
Sbjct: 232 QALRKMSGNASKAGCTLMFLNQIRYKIGVFYGNPEVTSGGIALKFFASVRLEIRLIGKIK 291

Query: 241 --DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
               D   G + RV+V K+K++ P+KQ EF+I++GEG+S  G ++D      +V K G+W
Sbjct: 292 SAKGDEDVGVKVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCVLDCAELMDVVAKKGSW 351

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           +S+K  RLGQGRE +  +LRE+    + IE ++R 
Sbjct: 352 YSYKDIRLGQGREKALQYLRESPTTCDEIEKVVRA 386


>gi|237745002|ref|ZP_04575483.1| RecA protein [Fusobacterium sp. 7_1]
 gi|260494779|ref|ZP_05814909.1| recombinase A [Fusobacterium sp. 3_1_33]
 gi|229432231|gb|EEO42443.1| RecA protein [Fusobacterium sp. 7_1]
 gi|260197941|gb|EEW95458.1| recombinase A [Fusobacterium sp. 3_1_33]
          Length = 379

 Score =  316 bits (808), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 192/373 (51%), Positives = 263/373 (70%), Gaps = 12/373 (3%)

Query: 1   MDYRKEMNIVD--------KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGS 52
           M  +KE N  D        K KA++ A++ I + +G G IM+LG + S+   +E + +GS
Sbjct: 1   MAAKKEKNAPDAKITDKEGKEKAVKDAMAAITKGFGAGLIMKLGEKSSM--NVESIPTGS 58

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           + LDIALGIGG PKGRI+E+YG ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA
Sbjct: 59  INLDIALGIGGVPKGRIIEVYGAESSGKTTLALHIIAEAQKQGGTVAFIDAEHALDPVYA 118

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           + LGVD+  LLISQPD GEQALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M +   
Sbjct: 119 KALGVDIDELLISQPDYGEQALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQM 178

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QARLMS+ LRKLT ++++ K  ++FINQ+R KIGV +G   TTTGG ALKFYSSVRL+
Sbjct: 179 GLQARLMSKGLRKLTGNLNKYKTTMIFINQIREKIGVTYGPTTTTTGGKALKFYSSVRLE 238

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           ++++G++K  D   G++  VKV KNK+A PFK+  F+I+YG+GIS  GE+ID  V   ++
Sbjct: 239 VKKMGTVKQGDDPIGSEVIVKVTKNKVAPPFKEAAFEILYGKGISRIGEIIDAAVARDVI 298

Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNA--GLVADSLLQEPAINT 350
            K+G+WFSF+ Q +GQG+E  +  L  N E+   +E  L++    G +     +      
Sbjct: 299 VKAGSWFSFRDQSIGQGKEKVRAELETNPELLAQVEKDLKEAIAKGPIEKKKKKSKKEVA 358

Query: 351 KDDADKDDTDNVE 363
            DD D D+ + ++
Sbjct: 359 SDDTDTDENNEID 371


>gi|256026794|ref|ZP_05440628.1| recombinase A [Fusobacterium sp. D11]
 gi|289764790|ref|ZP_06524168.1| RecA protein [Fusobacterium sp. D11]
 gi|289716345|gb|EFD80357.1| RecA protein [Fusobacterium sp. D11]
          Length = 379

 Score =  316 bits (808), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 192/373 (51%), Positives = 263/373 (70%), Gaps = 12/373 (3%)

Query: 1   MDYRKEMNIVD--------KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGS 52
           M  +KE N  D        K KA++ A++ I + +G G IM+LG + S+   +E + +GS
Sbjct: 1   MAAKKEKNAPDAKITDKEGKEKAVKDAMAAITKGFGAGLIMKLGEKSSM--NVESIPTGS 58

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           + LDIALGIGG PKGRI+E+YG ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA
Sbjct: 59  INLDIALGIGGVPKGRIIEVYGAESSGKTTLALHIIAEAQKQGGTVAFIDAEHALDPVYA 118

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           + LGVD+  LLISQPD GEQALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M +   
Sbjct: 119 KALGVDIDELLISQPDYGEQALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQM 178

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QARLMS+ LRKLT ++++ K  ++FINQ+R KIGV +G   TTTGG ALKFYSSVRL+
Sbjct: 179 GLQARLMSKGLRKLTGNLNKYKTTMIFINQIREKIGVTYGPTTTTTGGKALKFYSSVRLE 238

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           ++++G++K  D   G++  VKV KNK+A PFK+  F+I+YG+GIS  GE+ID  V   ++
Sbjct: 239 VKKMGTVKQGDDPIGSEVIVKVTKNKVAPPFKEAAFEILYGKGISRIGEIIDAAVARDVI 298

Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNA--GLVADSLLQEPAINT 350
            K+G+WFSF+ Q +GQG+E  +  L  N E+   +E  L++    G +     +      
Sbjct: 299 VKAGSWFSFRDQSIGQGKEKVRAELETNPELLAQVEKDLKEAIAKGPIEKKKKKSKKEVA 358

Query: 351 KDDADKDDTDNVE 363
            DD D D+ + ++
Sbjct: 359 SDDTDTDENNEID 371


>gi|237741571|ref|ZP_04572052.1| RecA protein [Fusobacterium sp. 4_1_13]
 gi|229429219|gb|EEO39431.1| RecA protein [Fusobacterium sp. 4_1_13]
          Length = 377

 Score =  316 bits (808), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 188/371 (50%), Positives = 262/371 (70%), Gaps = 10/371 (2%)

Query: 1   MDYRKEMNIVD--------KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGS 52
           M  +K+ NI D        K KA++ A++ I + +G G IM+LG + S+   +E + +GS
Sbjct: 1   MAAKKDKNIPDSKITDKEGKEKAVKDAMASITKDFGAGLIMKLGEKSSM--NVESIPTGS 58

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           + LDIALGIGG PKGRI+E+YG ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA
Sbjct: 59  INLDIALGIGGVPKGRIIEVYGAESSGKTTLALHIIAEAQKQGGTVAFIDAEHALDPVYA 118

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           + LGVD+  LLISQPD GEQALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M +   
Sbjct: 119 KALGVDIDELLISQPDYGEQALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQM 178

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QARLMS+ LRKLT ++++ K  ++FINQ+R KIGV +G   TTTGG ALKFYSSVR++
Sbjct: 179 GLQARLMSKGLRKLTGNLNKYKTTMIFINQIREKIGVSYGPTTTTTGGKALKFYSSVRME 238

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           ++++G++K  D   G++  VKV KNK+A PFK+  F+I+YG+GIS  GE+ID  V   ++
Sbjct: 239 VKKMGTVKQGDDPIGSEVIVKVTKNKVAPPFKEAAFEILYGKGISKIGEIIDAAVARDVI 298

Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
            K+G+WFSF+ Q +GQG+E  +  L  N E+   +E+ L++          ++ +     
Sbjct: 299 VKAGSWFSFRDQSIGQGKEKVRAELETNPELLAQVEADLKEAIAKGPVDKKKKKSKKEVA 358

Query: 353 DADKDDTDNVE 363
             D  + + V+
Sbjct: 359 SDDTGENNEVD 369


>gi|203284057|ref|YP_002221797.1| recA protein [Borrelia duttonii Ly]
 gi|226723625|sp|B5RLK6|RECA_BORDL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|201083500|gb|ACH93091.1| recA protein [Borrelia duttonii Ly]
          Length = 363

 Score =  315 bits (807), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 179/329 (54%), Positives = 255/329 (77%), Gaps = 3/329 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
            N ++K KA+E A  QI++ +GKG+++++G    + + +E + SGS+ LD A+GIGG+P+
Sbjct: 13  KNKLNKEKAIELARVQIEKDFGKGSLIKMGE-SPVGKYLESIPSGSILLDEAIGIGGYPR 71

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEI+GPESSGKTTL L  IA+ QKTGG  AF+DAEHALD +YAR LGV++  L +SQ
Sbjct: 72  GRVVEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQ 131

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQAL+I + L+RSG VD+IV+DSVAALTP+AEI+G+MG++  G+QARLMS+ALRK+
Sbjct: 132 PDTGEQALDIAEYLIRSGGVDLIVVDSVAALTPQAEIDGEMGDTQIGLQARLMSKALRKI 191

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI--KDKDS 244
           T+ +S+S   ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V  +     D+
Sbjct: 192 TAILSKSNTCIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKVEQVIGSSSDN 251

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + GN+ RVKVVKNK+A PF++ E  + +G+GIS    ++D  +K ++V KSG+W++    
Sbjct: 252 VIGNKIRVKVVKNKVAPPFRKAELIVYFGKGISREASILDAAIKYNLVQKSGSWYAMGDD 311

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQ 333
            LGQGREN   +L +   +A  +E+ LR+
Sbjct: 312 NLGQGRENVIEYLFKEKALANELENKLRK 340


>gi|58177549|pdb|1XP8|A Chain A, "deinococcus Radiodurans Reca In Complex With Atp-Gamma-S"
          Length = 366

 Score =  315 bits (807), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 188/335 (56%), Positives = 260/335 (77%), Gaps = 7/335 (2%)

Query: 2   DYRKEMNIV----DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDI 57
           D  KE++      ++SKA+E A+SQI++ +GKG+IM+LG++  +   ++VVS+GSL LD+
Sbjct: 7   DATKEISAPTDAKERSKAIETAMSQIEKAFGKGSIMKLGAESKL--DVQVVSTGSLSLDL 64

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG+GG P+GRI EIYGPES GKTTLAL  +AQ+QK GGTCAF+DAEHALD +YAR LGV
Sbjct: 65  ALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGV 124

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           +   LL+SQPD GEQALEI ++LVRSGA+D++V+DSVAALTPRAEIEGDMG+SLPG+QAR
Sbjct: 125 NTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQAR 184

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           LMSQALRKLT+ +S++    +FINQ+R KIGVM+G+PETTTGG ALKFY+SVRLD+R++G
Sbjct: 185 LMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIG 244

Query: 238 S-IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
              K  +    N  ++K VKNK+A+PFK+VE  ++YG+G     +L+ L     I+ K+G
Sbjct: 245 QPTKVGNDAVANTVKIKTVKNKVAAPFKEVELALVYGKGFDQLSDLVGLAADMDIIKKAG 304

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLL 331
           +++S+  +R+GQG+E +  ++ E  E+ + I   +
Sbjct: 305 SFYSYGDERIGQGKEKTIAYIAERPEMEQEIRDRV 339


>gi|15807331|ref|NP_296061.1| recombinase A [Deinococcus radiodurans R1]
 gi|6226893|sp|P42443|RECA_DEIRA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|6460153|gb|AAF11887.1|AE002065_4 recA protein [Deinococcus radiodurans R1]
 gi|2251089|dbj|BAA21330.1| RecA [Deinococcus radiodurans]
 gi|3478632|gb|AAC33148.1| DNA polymerase [Deinococcus radiodurans R1]
          Length = 363

 Score =  315 bits (807), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 188/335 (56%), Positives = 260/335 (77%), Gaps = 7/335 (2%)

Query: 2   DYRKEMNIV----DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDI 57
           D  KE++      ++SKA+E A+SQI++ +GKG+IM+LG++  +   ++VVS+GSL LD+
Sbjct: 4   DATKEISAPTDAKERSKAIETAMSQIEKAFGKGSIMKLGAESKL--DVQVVSTGSLSLDL 61

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG+GG P+GRI EIYGPES GKTTLAL  +AQ+QK GGTCAF+DAEHALD +YAR LGV
Sbjct: 62  ALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGV 121

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           +   LL+SQPD GEQALEI ++LVRSGA+D++V+DSVAALTPRAEIEGDMG+SLPG+QAR
Sbjct: 122 NTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQAR 181

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           LMSQALRKLT+ +S++    +FINQ+R KIGVM+G+PETTTGG ALKFY+SVRLD+R++G
Sbjct: 182 LMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIG 241

Query: 238 S-IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
              K  +    N  ++K VKNK+A+PFK+VE  ++YG+G     +L+ L     I+ K+G
Sbjct: 242 QPTKVGNDAVANTVKIKTVKNKVAAPFKEVELALVYGKGFDQLSDLVGLAADMDIIKKAG 301

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLL 331
           +++S+  +R+GQG+E +  ++ E  E+ + I   +
Sbjct: 302 SFYSYGDERIGQGKEKTIAYIAERPEMEQEIRDRV 336


>gi|261749133|ref|YP_003256818.1| recombination protein RecA [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497225|gb|ACX83675.1| recA protein [Blattabacterium sp. (Periplaneta americana) str.
           BPLAN]
          Length = 333

 Score =  315 bits (806), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 202/331 (61%), Positives = 261/331 (78%), Gaps = 4/331 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M+ +KE     K KAL   L ++ ++YGKG +M++G      E +E++SSGS+GLDIALG
Sbjct: 1   MNEKKER-FEQKKKALRLVLDKMDKIYGKGTVMRMGDSHK--ENLEIISSGSIGLDIALG 57

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           I GFPKGRI+EI+GPESSGKTTLALH I QSQK GG   F+DAEHA D +YA+K+GV++K
Sbjct: 58  IKGFPKGRIIEIFGPESSGKTTLALHAITQSQKIGGFAGFIDAEHAFDCVYAQKIGVNIK 117

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            L+ISQPD GEQALEI D L+RSG +D+IV+DSVAALTP++EIEG+MG+S  G+QARLMS
Sbjct: 118 ELIISQPDNGEQALEIVDNLIRSGVIDMIVVDSVAALTPKSEIEGEMGDSKIGLQARLMS 177

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRKLTSSI +SK IL+FINQ+R KIGV +G+PE TTGGNALKFYSS+RLDIR+   IK
Sbjct: 178 QALRKLTSSIGKSKSILIFINQLREKIGV-YGNPEVTTGGNALKFYSSIRLDIRKGNQIK 236

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           + + I GN+T+VKVVKNK++ PFK  EFD++YGEGIS  GE++DLGV   I+ K+G+WFS
Sbjct: 237 NGEKILGNRTKVKVVKNKLSPPFKTAEFDLLYGEGISKIGEILDLGVDLGIIKKNGSWFS 296

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLL 331
           +   +LGQGR++ K FL+    I   ++  +
Sbjct: 297 YGDLQLGQGRDSVKEFLKGKKNILNEMQKNI 327


>gi|241890054|ref|ZP_04777352.1| protein RecA [Gemella haemolysans ATCC 10379]
 gi|241863676|gb|EER68060.1| protein RecA [Gemella haemolysans ATCC 10379]
          Length = 379

 Score =  315 bits (806), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 198/355 (55%), Positives = 256/355 (72%), Gaps = 12/355 (3%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  A+  A+  I++ YGKGAIM + S+  I   +E VSSGSL +D ALGIGG+PKGRIVE
Sbjct: 21  RQAAINEAIKVIEKEYGKGAIMDISSENPI--KVEAVSSGSLAIDSALGIGGYPKGRIVE 78

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN--LLISQPDT 129
           +YGPESSGKTT+ALH IA+ QKTGG  AF+DAE+ALD  YA+ LGVD       +SQPD+
Sbjct: 79  VYGPESSGKTTIALHAIAEVQKTGGIAAFIDAENALDIEYAKALGVDFTPGKFFLSQPDS 138

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQAL+I + L+ SGA+DIIVIDSVAAL P+AEI+G MG +  G+QARLMSQALRKLT  
Sbjct: 139 GEQALDIAEKLILSGAIDIIVIDSVAALVPKAEIDGVMGANHIGLQARLMSQALRKLTGQ 198

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSITGN 248
           I+++  I +FINQ+R K+GVMFGSPE TTGG ALKFYS+VR+D+R+  +IK     I GN
Sbjct: 199 INKANTIALFINQLREKVGVMFGSPEVTTGGRALKFYSTVRIDVRKGEAIKGADSEILGN 258

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +T++K+VKNK+A PFK  E DIM+GEGIS  GE +D  V   I++KSG+WFS+ G+RLGQ
Sbjct: 259 RTKIKIVKNKVAPPFKVAEVDIMFGEGISKIGETLDFAVDLDIINKSGSWFSYNGERLGQ 318

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           GREN K    EN E+   I        GLV D ++ +         +++  DN++
Sbjct: 319 GRENVKKVFEENEELYNEI-------YGLVRDEIMSKTGKKNNSVDEEESNDNID 366


>gi|256844906|ref|ZP_05550364.1| recombination protein RecA [Fusobacterium sp. 3_1_36A2]
 gi|256718465|gb|EEU32020.1| recombination protein RecA [Fusobacterium sp. 3_1_36A2]
          Length = 381

 Score =  315 bits (806), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 188/371 (50%), Positives = 262/371 (70%), Gaps = 10/371 (2%)

Query: 1   MDYRKEMNIVD--------KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGS 52
           M  +K+ NI D        K KA++ A++ I + +G G IM+LG + S+   +E + +GS
Sbjct: 5   MAAKKDKNIPDSKITDKEGKEKAVKDAMASITKDFGAGLIMKLGEKSSM--NVESIPTGS 62

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           + LDIALGIGG PKGRI+E+YG ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA
Sbjct: 63  INLDIALGIGGVPKGRIIEVYGAESSGKTTLALHIIAEAQKQGGTVAFIDAEHALDPVYA 122

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           + LGVD+  LLISQPD GEQALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M +   
Sbjct: 123 KALGVDIDELLISQPDYGEQALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQM 182

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QARLMS+ LRKLT ++++ K  ++FINQ+R KIGV +G   TTTGG ALKFYSSVR++
Sbjct: 183 GLQARLMSKGLRKLTGNLNKYKTTMIFINQIREKIGVSYGPTTTTTGGKALKFYSSVRME 242

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           ++++G++K  D   G++  VKV KNK+A PFK+  F+I+YG+GIS  GE+ID  V   ++
Sbjct: 243 VKKMGTVKQGDDPIGSEVIVKVTKNKVAPPFKEAAFEILYGKGISKIGEIIDAAVARDVI 302

Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
            K+G+WFSF+ Q +GQG+E  +  L  N E+   +E+ L++          ++ +     
Sbjct: 303 VKAGSWFSFRDQSIGQGKEKVRAELETNPELLAQVEADLKEAIAKGPVDKKKKKSKKEVA 362

Query: 353 DADKDDTDNVE 363
             D  + + V+
Sbjct: 363 SDDTGENNEVD 373


>gi|313585622|gb|ADR70953.1| recombinase A [Deinococcus murrayi]
          Length = 359

 Score =  314 bits (805), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 186/331 (56%), Positives = 254/331 (76%), Gaps = 3/331 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           D+    +  ++ KA+E A++QI++ +GKG+IM+LG++  +   ++ VS+GSL LD+ALG+
Sbjct: 8   DFGTPSDSKERLKAIETAMTQIEKAFGKGSIMRLGAESKL--DVQAVSTGSLSLDLALGV 65

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GRI EIYGPES GKTTLAL  IAQ+QK GGTCAF+DAEHALD +YAR LGV+   
Sbjct: 66  GGIPRGRITEIYGPESGGKTTLALSVIAQAQKAGGTCAFIDAEHALDPVYARSLGVNTDE 125

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPD GEQ LEI ++LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQ
Sbjct: 126 LLVSQPDNGEQRLEIMELLVRSGAIDVVVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQ 185

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS-IK 240
           ALRKLT+ +S++    +FINQ+R KIGVM+G+PETTTGG ALKFY+SVRLD+R++G  +K
Sbjct: 186 ALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIGQPVK 245

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             +   GN  +VK VKNK+A PFK+VE  +MYG+G     +L+ L     I+ K+G+++S
Sbjct: 246 MGNDAVGNTVKVKTVKNKVAPPFKEVELTLMYGKGFDQLSDLVTLASDMDIIKKAGSFYS 305

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLL 331
           +   RLGQG+E +  ++ E  E+   I   +
Sbjct: 306 YGEDRLGQGKEKAIAYIAERPELEAEIRERV 336


>gi|262066332|ref|ZP_06025944.1| protein RecA [Fusobacterium periodonticum ATCC 33693]
 gi|291379896|gb|EFE87414.1| protein RecA [Fusobacterium periodonticum ATCC 33693]
          Length = 379

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 189/342 (55%), Positives = 254/342 (74%), Gaps = 10/342 (2%)

Query: 1   MDYRKEMNIVD--------KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGS 52
           M  +K+ N  D        K KA+  A++ I + +G G IM+LG + S+   +E + +GS
Sbjct: 1   MAAKKDKNTPDSKITDKEGKQKAVNDAMAAITKGFGAGLIMKLGEKSSM--NVESIPTGS 58

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           + LDIALGIGG PKGRI+EIYG ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA
Sbjct: 59  INLDIALGIGGVPKGRIIEIYGAESSGKTTLALHVIAEAQKQGGTVAFIDAEHALDPVYA 118

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           + LGVD+  LLISQPD GEQALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M +   
Sbjct: 119 KALGVDIDELLISQPDYGEQALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQM 178

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QARLMS+ LRKLT ++++ K  ++FINQ+R KIGV +G   TTTGG ALKFY+SVRL+
Sbjct: 179 GLQARLMSKGLRKLTGNLNKYKTTMIFINQIREKIGVTYGPSTTTTGGKALKFYASVRLE 238

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           ++++G++K  D   G++  VKV KNK+A PFK+  F+I+YG+GIS  GE+ID  V   I+
Sbjct: 239 VKKMGTVKQGDDPIGSEVVVKVTKNKVAPPFKEAAFEILYGKGISRVGEIIDAAVARDII 298

Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
            K+G+WFSF+ Q +GQG+E  +I L  N E+ E +E+ L++ 
Sbjct: 299 VKAGSWFSFRDQSIGQGKEKVRIELESNPELLEQVEADLKEA 340


>gi|148878997|emb|CAM07014.1| RecA protein [Mycobacterium sp. MG7]
          Length = 281

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 185/283 (65%), Positives = 235/283 (83%), Gaps = 2/283 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG +  + + I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q 
Sbjct: 1   RLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQA 58

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG  AF+DAEHALD  YA+KLGVD  +LL+SQPDTGEQALEI DMLVRSGA+ ++VIDS
Sbjct: 59  AGGIAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAISLLVIDS 118

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           VAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFGS
Sbjct: 119 VAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGS 178

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PETTTGG ALKFYSSVRLD+RR+ ++KD     GN+TRVKVVKNK++ PFKQ EFDI+YG
Sbjct: 179 PETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYG 238

Query: 274 EGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316
           +GIS  G LID+GV+   + KSG+WF+++G++LGQG+EN++ F
Sbjct: 239 KGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGKENARNF 281


>gi|285809806|gb|ADC36196.1| RecA [Burkholderia sp. GB-01]
          Length = 281

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 205/282 (72%), Positives = 248/282 (87%), Gaps = 1/282 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GEATEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
            FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQ
Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 281


>gi|237736676|ref|ZP_04567157.1| RecA protein [Fusobacterium mortiferum ATCC 9817]
 gi|229420538|gb|EEO35585.1| RecA protein [Fusobacterium mortiferum ATCC 9817]
          Length = 367

 Score =  314 bits (804), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 190/364 (52%), Positives = 260/364 (71%), Gaps = 6/364 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M  +KE   V K KALE A+ +I + +G+G+IM+LG+  ++   IEV+ +GS+ +D+ALG
Sbjct: 1   MAAKKEE--VSKEKALEQAIGKISKEFGEGSIMKLGNNLNM--EIEVIPTGSINIDMALG 56

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG PKGRI+E+YG ESSGKTT+ALH  AQ+QK  G  A++DAEHALD  YA+ LGVD+ 
Sbjct: 57  VGGVPKGRIIEVYGAESSGKTTIALHIAAQAQKNKGVVAYIDAEHALDPEYAKALGVDVD 116

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LLISQPD GEQALEI D+LVRSGAVD+IV+DSVAAL P+AEI+G+M +   G+QARLMS
Sbjct: 117 ELLISQPDYGEQALEIADLLVRSGAVDLIVVDSVAALVPKAEIDGEMSDQQMGLQARLMS 176

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           +ALRKLT S+++SK  ++FINQ+R KIG   FG   TTTGG ALKFY+SVR++++R+GS+
Sbjct: 177 KALRKLTGSLNKSKTTMIFINQIRDKIGGFGFGPQTTTTGGKALKFYASVRMEVKRIGSV 236

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           K  D + GN+T VK+ KNK+A PFK+  F IMYG+GI+  GE+ +L +   +V KSG WF
Sbjct: 237 KQGDDVIGNETTVKITKNKVAPPFKEASFQIMYGKGITRVGEIFELAIDNDVVSKSGTWF 296

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           SF   RLGQG+EN K  L    E+   IE  + +        + +   +  +D+ + +  
Sbjct: 297 SFGDIRLGQGKENVKNRLEVEKELFAQIEEKVLEILK-SGKQVKKAKKVELEDNLEIEKE 355

Query: 360 DNVE 363
           +  E
Sbjct: 356 NFEE 359


>gi|255080474|ref|XP_002503817.1| recA DNA recombinase [Micromonas sp. RCC299]
 gi|226519084|gb|ACO65075.1| recA DNA recombinase [Micromonas sp. RCC299]
          Length = 515

 Score =  314 bits (804), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 169/323 (52%), Positives = 232/323 (71%), Gaps = 5/323 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL+  L +I   +GKG+IM+LG        +    SG++ LDIALG GG P+GRIVE
Sbjct: 130 KKKALDRVLGEIDANFGKGSIMKLGEASQA--KVATFPSGAMTLDIALG-GGMPRGRIVE 186

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTLALH +A+ QK GGT A +DAEHA D  Y+++LG+D+ ++++ QP+TGE
Sbjct: 187 VYGPESSGKTTLALHAMAEMQKLGGTVALIDAEHAFDPEYSQRLGLDVDDVVVCQPETGE 246

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
            ALE+ D LVRS AVD+IV+DSVAAL PR+EIEG++G    G  ARLMSQALRK+  + +
Sbjct: 247 MALEVVDTLVRSSAVDLIVVDSVAALVPRSEIEGEIGMVQVGAHARLMSQALRKINVNAA 306

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI--KDKDSITGNQ 249
           ++   ++F+NQ+R K+GV++G+PE TTGGNALKFY+SVRLDIRR   I  K      G +
Sbjct: 307 KAGVTIIFLNQLRSKVGVIYGNPEITTGGNALKFYASVRLDIRRKEVIRGKAGADDEGVR 366

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKV KNK+A P+K  EFD+++G GIS  G ++D   +  ++ + GAW+S+  +RLGQG
Sbjct: 367 VKVKVAKNKIAPPYKTAEFDMLFGRGISRDGCMLDAADELGVITRRGAWYSYGEERLGQG 426

Query: 310 RENSKIFLRENIEIAENIESLLR 332
           RE +  FL  N EI + +E  +R
Sbjct: 427 REKAAEFLDANPEIKKQVEEDVR 449


>gi|162424785|gb|ABX90070.1| RecA protein [Burkholderia nodosa]
          Length = 282

 Score =  314 bits (804), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 206/283 (72%), Positives = 249/283 (87%), Gaps = 1/283 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGD-GDAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  IAEMQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I ++ C+++FINQ+RMKI
Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKKTNCMVIFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + G++TRVKVVKNK+A PF++  
Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGSETRVKVVKNKVAPPFREAV 239

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           FDI+YGEGIS  GE++DLGV+A IVDK+GAW+S+ G+R+GQG+
Sbjct: 240 FDILYGEGISRQGEIVDLGVQAKIVDKAGAWYSYNGERIGQGK 282


>gi|89889682|ref|ZP_01201193.1| RecA/RadA recombinase [Flavobacteria bacterium BBFL7]
 gi|89517955|gb|EAS20611.1| RecA/RadA recombinase [Flavobacteria bacterium BBFL7]
          Length = 307

 Score =  314 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 190/307 (61%), Positives = 251/307 (81%), Gaps = 3/307 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M++G +  +   ++ + +GSL L+ ALG+GG+P+GR+VEIYGPESSGKTTL LH IA++Q
Sbjct: 1   MKMGDKQVV--EVDSIPTGSLALNSALGVGGYPRGRVVEIYGPESSGKTTLTLHAIAEAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG  AF+DAEHA D  YA KLGVD+ NL+ISQPD GEQALEI + L+RSGA+DIIVID
Sbjct: 59  KAGGIAAFIDAEHAFDRFYAEKLGVDIDNLIISQPDHGEQALEIAENLIRSGAIDIIVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP++EIEG+MG+S  G+ ARLMSQALRK+T +IS++ C ++FINQ+R KIGVMFG
Sbjct: 119 SVAALTPKSEIEGEMGDSKMGLHARLMSQALRKMTGTISKTNCTVIFINQLREKIGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           +PETTTGGNALKFY+SVRLDIRR   IKD   S+ GN+TRVKVVKNK+A PF+  EFDIM
Sbjct: 179 NPETTTGGNALKFYASVRLDIRRSTQIKDTSGSVLGNKTRVKVVKNKVAPPFRTAEFDIM 238

Query: 272 YGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLL 331
           YGEG+S  GE+IDLGV+  I++K+G+WFS++  +LGQGR++ K  L++N ++A+ +++ +
Sbjct: 239 YGEGVSILGEIIDLGVEYEIINKAGSWFSYEDTKLGQGRDSVKNILKDNPDLADELQAKI 298

Query: 332 RQNAGLV 338
            +   LV
Sbjct: 299 MEAIRLV 305


>gi|162450896|ref|YP_001613263.1| RecA protein [Sorangium cellulosum 'So ce 56']
 gi|161161478|emb|CAN92783.1| RecA protein [Sorangium cellulosum 'So ce 56']
          Length = 342

 Score =  314 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 187/324 (57%), Positives = 241/324 (74%), Gaps = 1/324 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
            I +K + ++  +  I++ +GKGAIM L  +      I ++ +GSL LD ALGIGG+P+G
Sbjct: 4   EIAEKLRTVKTVVGTIEKQFGKGAIMSLNDENETR-DIGLIRTGSLSLDAALGIGGYPRG 62

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTL LH + ++Q+ GG  AF+DAEHA D  YAR +GVD+  LL+SQP
Sbjct: 63  RIVEIYGPESSGKTTLTLHAMREAQRAGGVAAFIDAEHAFDVTYARSVGVDIDRLLVSQP 122

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQALEI +ML RS AVD+IV+DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT
Sbjct: 123 DNGEQALEIVEMLARSSAVDVIVVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLT 182

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
               R+   L+FINQ+R KIGV+FG+PE TTGGNALKFY+SVRLD+RRVG +K  D   G
Sbjct: 183 GICHRTDTTLIFINQLRQKIGVVFGNPEVTTGGNALKFYASVRLDVRRVGPVKVSDEAIG 242

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           ++TRVKVVKNKMA PF++ EFDI +G GI    +LID   +  +V+KSGA  SF G+ +G
Sbjct: 243 SRTRVKVVKNKMAPPFREAEFDIRWGAGIDGAADLIDFACQLGVVEKSGAHLSFAGEHIG 302

Query: 308 QGRENSKIFLRENIEIAENIESLL 331
           QGRE ++  L     +A ++ + +
Sbjct: 303 QGRERAREALIGKPTLATSLRAAV 326


>gi|294101403|ref|YP_003553261.1| recA protein [Aminobacterium colombiense DSM 12261]
 gi|293616383|gb|ADE56537.1| recA protein [Aminobacterium colombiense DSM 12261]
          Length = 370

 Score =  313 bits (802), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 172/361 (47%), Positives = 250/361 (69%), Gaps = 4/361 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K+ N   +   LE A+  I+  +G+G+IM+LG    +   +EV+S+G L LD+ALGIGG 
Sbjct: 3   KKKNPQTREDILELAIDDIRSKFGEGSIMRLGDPFKV--QVEVISTGILPLDVALGIGGL 60

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRIVEI+GPE SGKTT+ALH IA++QK GG  AF+DAEHALD   A  LGVD+++L +
Sbjct: 61  PKGRIVEIFGPEGSGKTTVALHGIAEAQKAGGIAAFIDAEHALDPRLAASLGVDVQSLYV 120

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           +QPD+GEQAL + D LVRSGAVD++V+DSVAALTP+AEI+G +G+S  G+QARLMS ALR
Sbjct: 121 AQPDSGEQALYVLDTLVRSGAVDLVVVDSVAALTPQAEIDGKIGDSQLGLQARLMSYALR 180

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           +LTS+ISRS C++VFINQ+R KI   +     ETTTGG ALKFYSSVR++++R  SI   
Sbjct: 181 RLTSAISRSNCVVVFINQLRAKISTGYSSGPQETTTGGRALKFYSSVRVEVKRGKSINKG 240

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           +   G++  +KVVKNK A PF+     ++YG+G+     L+D+ +   ++ K G+W ++K
Sbjct: 241 EDAIGHELWMKVVKNKQAPPFRTAHASLIYGKGVPKGMSLLDMAIDLEVMKKKGSWLAYK 300

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           G+ +GQG++N   +L ++ E+ E + + +          +L E   +   + +K++   +
Sbjct: 301 GETIGQGKDNVAQYLEDHPELMEELTTEIMSKVAEGLGFVLGEDEDDDGGNIEKEEDLPI 360

Query: 363 E 363
           E
Sbjct: 361 E 361


>gi|262341357|ref|YP_003284212.1| recombinase A [Blattabacterium sp. (Blattella germanica) str. Bge]
 gi|262272694|gb|ACY40602.1| recombinase A [Blattabacterium sp. (Blattella germanica) str. Bge]
          Length = 333

 Score =  313 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 202/326 (61%), Positives = 259/326 (79%), Gaps = 3/326 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
              I  K K+LE  L ++ ++YGKG +M++G   S  E +E++SSGSL LDIALGI GFP
Sbjct: 2   NEKIEQKRKSLELVLEKMDKIYGKGTVMRMGD--SHIENLEIISSGSLSLDIALGIYGFP 59

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRI+EI+GPESSGKTT+ALH I QSQK GG  +F+DAEHALD +YA+K+GV++K L+IS
Sbjct: 60  KGRIIEIFGPESSGKTTVALHAITQSQKLGGFASFIDAEHALDCLYAQKIGVNVKELIIS 119

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQALEI D L+RSG +D+IV+DSVAALTP++EIEG+MG+S  G+QARLMSQALRK
Sbjct: 120 QPDNGEQALEIVDNLIRSGVIDMIVVDSVAALTPKSEIEGEMGDSKIGLQARLMSQALRK 179

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LTSSI +SK IL+FINQ+R KIGV +G+PE TTGGNALKFYSS+RLDIR+   IK+ + +
Sbjct: 180 LTSSIGKSKSILIFINQLREKIGV-YGNPEVTTGGNALKFYSSIRLDIRKGNQIKNGEKV 238

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            GN+T+VKVVKNK++ PFK  EFDIMYGEGIS  GE++DLGV   I+ K+ +WFS+   +
Sbjct: 239 LGNRTKVKVVKNKLSPPFKIAEFDIMYGEGISKIGEILDLGVDLGIIKKNASWFSYGDMK 298

Query: 306 LGQGRENSKIFLRENIEIAENIESLL 331
           LGQGR++ K FL+    I   I+  +
Sbjct: 299 LGQGRDSVKEFLKGKKNIINEIQKNI 324


>gi|260890264|ref|ZP_05901527.1| protein RecA [Leptotrichia hofstadii F0254]
 gi|260859884|gb|EEX74384.1| protein RecA [Leptotrichia hofstadii F0254]
          Length = 349

 Score =  312 bits (800), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 198/351 (56%), Positives = 258/351 (73%), Gaps = 7/351 (1%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L+ AL QIQ+ YG GA+M+LG    +   I  +S+GSL LDIALGIGG P+GRIVEIYG 
Sbjct: 2   LDLALKQIQKDYGDGAVMKLGENQKM--NIRAISTGSLNLDIALGIGGVPRGRIVEIYGA 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGV++  LLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALHIIAEAQKAGGTVAFIDAEHALDPVYAKALGVNIDELLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I+DMLVRSGA+D+IV+DSVAAL P+AEIEG+MG+   G+QARLMS+ALRKLT SIS+S  
Sbjct: 120 ISDMLVRSGAMDVIVVDSVAALVPKAEIEGEMGDQQMGLQARLMSKALRKLTGSISKSDT 179

Query: 196 ILVFINQMRMKIGVM---FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           +++FINQ+R KIG      G   TT+GG ALKF+S+VRL+++RVGS+K  D + G++  V
Sbjct: 180 VMIFINQIREKIGGFSFVPGVQTTTSGGRALKFFSTVRLEVKRVGSVKQGDDVIGSEVVV 239

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KV KNK+A PFK+ +F++MYG GIS  GE++D  +   I  KSGAWFS+  +RLGQGR N
Sbjct: 240 KVTKNKVAPPFKEAKFNVMYGTGISRIGEVLDAAINLGIASKSGAWFSYGDERLGQGRVN 299

Query: 313 SKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            +  L+EN E+ E +E  +     +      ++  I    +A+  +  N E
Sbjct: 300 VENMLKENKEVYERLEKQVLDA--IRPKQETEQLKIVETAEAENKEAGNNE 348


>gi|34763249|ref|ZP_00144210.1| RecA protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|27887076|gb|EAA24186.1| RecA protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
          Length = 377

 Score =  312 bits (799), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 188/371 (50%), Positives = 263/371 (70%), Gaps = 10/371 (2%)

Query: 1   MDYRKEMNIVD--------KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGS 52
           M  +K+ NI D        K KA++ A++ I + +G G IM+LG + S+   +E + +GS
Sbjct: 1   MAAKKDKNIPDSKITDKEGKEKAVKDAMASITKDFGAGLIMKLGEKSSM--NVESIPTGS 58

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           + LDIALGIGG PKGRI+E+YG ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA
Sbjct: 59  INLDIALGIGGVPKGRIIEVYGAESSGKTTLALHIIAEAQKQGGTVAFIDAEHALDPVYA 118

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           + LGVD+  LLISQPD GEQALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M +   
Sbjct: 119 KALGVDIDELLISQPDYGEQALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQM 178

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QARLMS+ LRKLT ++++ K  ++FINQ+R KIGV +G   TTTGG ALKFYSSVR++
Sbjct: 179 GLQARLMSKGLRKLTGNLNKYKTTMIFINQIREKIGVSYGPTTTTTGGKALKFYSSVRME 238

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           ++++G++K  D   G++  VKV KNK+A PFK+  F+I+YG+GIS  GE+ID  V   ++
Sbjct: 239 VKKMGTVKQGDDPIGSEVIVKVTKNKVAPPFKEAAFEILYGKGISKIGEIIDAAVARDVI 298

Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
            K+G+WFSF+ Q +GQG+E  +  L  N+E+   +E+ L++          ++ +     
Sbjct: 299 VKAGSWFSFRDQSIGQGKEKVRAELETNLELLAQVEADLKEAIAKGPVDKKKKKSKKEVA 358

Query: 353 DADKDDTDNVE 363
             D  + + V+
Sbjct: 359 SDDTGENNEVD 369


>gi|149917443|ref|ZP_01905941.1| recombination repairing protein [Plesiocystis pacifica SIR-1]
 gi|149821780|gb|EDM81176.1| recombination repairing protein [Plesiocystis pacifica SIR-1]
          Length = 365

 Score =  312 bits (798), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 188/333 (56%), Positives = 234/333 (70%), Gaps = 3/333 (0%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
            ++ I   +GKGAIM LG         + V +GSL LD ALGIGG P GRIVEIYGPESS
Sbjct: 34  TVASICDRFGKGAIMALGGDTGEGPRYDAVPTGSLALDEALGIGGLPLGRIVEIYGPESS 93

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTL LH IA++Q+ G  CAF+DAEHALD  YA+ LGVD   LL+SQPD GEQALEI D
Sbjct: 94  GKTTLTLHLIAEAQRRGLVCAFLDAEHALDVQYAQALGVDPDELLVSQPDCGEQALEIAD 153

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            L R+GAV +IVIDSVAAL P+AE+EGDMG+   G+QARLMSQA+RKL+   +++  ++V
Sbjct: 154 SLARTGAVGLIVIDSVAALIPKAELEGDMGDHHVGLQARLMSQAMRKLSGVAAQTNTLMV 213

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           FINQ+R KIGV FGSPE TTGGNALK+Y+SVRLDIRR+ ++KD D   G++TRVKVVKNK
Sbjct: 214 FINQLRHKIGVSFGSPEVTTGGNALKYYASVRLDIRRIATLKDGDRAVGSRTRVKVVKNK 273

Query: 259 MASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLR 318
            A PF + EF+I +G GI    E++D  ++A +V K+G+WFSF  QRLGQGR      LR
Sbjct: 274 CAPPFARAEFEIAFGRGIDREAEVLDRALEAGVVTKAGSWFSFGDQRLGQGRARVLESLR 333

Query: 319 ENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
              E    +   L+       D L   P  ++K
Sbjct: 334 AEPERCRELVEALKPK---TVDKLELGPVSDSK 363


>gi|329770496|ref|ZP_08261874.1| RecA protein [Gemella sanguinis M325]
 gi|328836245|gb|EGF85914.1| RecA protein [Gemella sanguinis M325]
          Length = 375

 Score =  311 bits (797), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 197/359 (54%), Positives = 256/359 (71%), Gaps = 10/359 (2%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           ++ ++  +  A+  A+  I++ YGKGAIM + S+  I   +E VSSGSL +D ALGIGG+
Sbjct: 14  EKEDLKARQAAINEAIKVIEKEYGKGAIMDISSENPI--KVEAVSSGSLAIDSALGIGGY 71

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN--L 122
           PKGRIVE+YGPESSGKTT+ALH IA+ QKTGG  AF+DAE+ALD  YA+ LGVD      
Sbjct: 72  PKGRIVEVYGPESSGKTTIALHAIAEVQKTGGIAAFIDAENALDIEYAKALGVDFTPGKF 131

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
            +SQPD+GEQAL+I + L+ SGA+DIIVIDSVAAL P+AEI+G MG +  G+QARLMSQA
Sbjct: 132 FLSQPDSGEQALDIAEKLILSGAIDIIVIDSVAALVPKAEIDGVMGANHIGLQARLMSQA 191

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD- 241
           LRKLT  I+++  I +FINQ+R K+GVMFGSPE TTGG ALKFYS+VR+D+R+  +IK  
Sbjct: 192 LRKLTGQINKANTIALFINQLREKVGVMFGSPEVTTGGRALKFYSTVRIDVRKGEAIKGA 251

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
              I GN+T++K+VKNK+A PFK  E DIM+GEGIS  GE +D  V   I++KSG+WFS+
Sbjct: 252 DSEILGNRTKIKIVKNKVAPPFKIAEVDIMFGEGISKIGETLDFAVDLDIINKSGSWFSY 311

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
            G+RLGQGREN K    EN E+   I  L+R                 + +D + D+ D
Sbjct: 312 NGERLGQGRENVKKVFEENEELYNEIYDLVRAEI-----LNKTGNKETSTEDLEADELD 365


>gi|220918844|ref|YP_002494148.1| recA protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956698|gb|ACL67082.1| recA protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 316

 Score =  311 bits (797), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 193/317 (60%), Positives = 248/317 (78%), Gaps = 1/317 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG        + VV SGS+GLD+ALG+GG P+GR+VEI+GPESSGKTTLALH IA++Q
Sbjct: 1   MRLGEAEEPA-AMPVVPSGSIGLDLALGVGGLPRGRVVEIFGPESSGKTTLALHAIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG  AF+DAEHALD  YARKLGV+L  LL+SQPDTGEQALEI + LVRSGA D+IV+D
Sbjct: 60  KAGGVAAFLDAEHALDVGYARKLGVNLGELLVSQPDTGEQALEIAEQLVRSGACDVIVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEG+MG++  G+QARLMSQALRKLT  +SR++ ++VFINQ+RMKIGVMFG
Sbjct: 120 SVAALVPKAEIEGEMGDAHMGVQARLMSQALRKLTGVVSRNQTLVVFINQIRMKIGVMFG 179

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETTTGG+ALKFY+SVR+DIRR+G +K+ D++ G++TRVKVVKNK+A PF++ EFDI Y
Sbjct: 180 NPETTTGGHALKFYASVRMDIRRIGQVKEGDAVVGSRTRVKVVKNKVAPPFREAEFDIRY 239

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           G G+  FGE +DLGV+   V+KSGA FS  G+R+GQGRE +  +LR N    E +   ++
Sbjct: 240 GVGVDRFGEAVDLGVERGAVEKSGAHFSMDGERIGQGRERAAEWLRANPAAFERLVERIK 299

Query: 333 QNAGLVADSLLQEPAIN 349
                   +++   A  
Sbjct: 300 APGAPTPLAVVAAEAAG 316


>gi|317495221|ref|ZP_07953591.1| recA bacterial DNA recombination protein [Gemella moribillum M424]
 gi|316914643|gb|EFV36119.1| recA bacterial DNA recombination protein [Gemella moribillum M424]
          Length = 377

 Score =  311 bits (797), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 195/330 (59%), Positives = 248/330 (75%), Gaps = 5/330 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +I  +  A+  A+  I++ YGKGAIM + S+  I   +E VSSGSL +D ALGIGG+PKG
Sbjct: 17  DIKARQAAINEAIKVIEKEYGKGAIMDISSENPI--KVEAVSSGSLAIDSALGIGGYPKG 74

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN--LLIS 125
           RIVE+YGPESSGKTT+ALH IA+ QKTGG  AF+DAE+ALD  YA+ LGVD       +S
Sbjct: 75  RIVEVYGPESSGKTTIALHAIAEVQKTGGIAAFIDAENALDIEYAKALGVDFTPGKFFLS 134

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD+GEQAL+I + L+ SGA+DIIVIDSVAAL P+AEI+G MG +  G+QARLMSQALRK
Sbjct: 135 QPDSGEQALDIAEKLILSGAIDIIVIDSVAALVPKAEIDGVMGANHIGLQARLMSQALRK 194

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDS 244
           LT  I+++  I +FINQ+R K+GVMFGSPE TTGG ALKFYS+VR+D+R+  +IK     
Sbjct: 195 LTGQINKANTIALFINQLREKVGVMFGSPEVTTGGRALKFYSTVRIDVRKGEAIKGADSE 254

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           I GN+T++K+VKNK+A PFK  E DIM+GEGIS  GE +D  V   I++KSG+WFS+ G+
Sbjct: 255 ILGNRTKIKIVKNKVAPPFKIAEVDIMFGEGISKIGETLDFAVDLDIINKSGSWFSYNGE 314

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQN 334
           RLGQGREN K    EN E+   I  L+R+ 
Sbjct: 315 RLGQGRENIKKVFEENEELYNEIYHLVREK 344


>gi|86160035|ref|YP_466820.1| recA protein [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776546|gb|ABC83383.1| recA protein [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 316

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 192/317 (60%), Positives = 249/317 (78%), Gaps = 1/317 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG        + VV SGS+GLD+ALG+GG P+GR+VEI+GPESSGKTTLALH IA++Q
Sbjct: 1   MRLGEAEEPA-AMPVVPSGSIGLDLALGVGGLPRGRVVEIFGPESSGKTTLALHAIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG  AF+DAEHALD  YARKLGV+L  LL+SQPDTGEQALEI + LVRSGA D+IV+D
Sbjct: 60  KAGGVAAFIDAEHALDVGYARKLGVNLGELLVSQPDTGEQALEIAEQLVRSGACDVIVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  +SR++ I+VFINQ+RMKIGV+FG
Sbjct: 120 SVAALVPKAEIEGEMGDSHMGVQARLMSQALRKLTGVVSRNQTIVVFINQIRMKIGVVFG 179

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETTTGG+ALKFY+SVR+DIRR+G +K+ D++ G++TRVKVVKNK++ PF++ EFDI Y
Sbjct: 180 NPETTTGGHALKFYASVRMDIRRIGQVKEGDAVVGSRTRVKVVKNKVSPPFREAEFDIRY 239

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           G G+  F E +DLGV+   V++SGA FSF+G+R+GQGRE +  +LR N    E +   ++
Sbjct: 240 GVGVDRFAEAVDLGVERGAVERSGAHFSFEGERIGQGRERAAEWLRANPAALERLVERIK 299

Query: 333 QNAGLVADSLLQEPAIN 349
                   +++   A  
Sbjct: 300 APGAPTPLAVVAAEAAG 316


>gi|288573280|ref|ZP_06391637.1| recA protein [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569021|gb|EFC90578.1| recA protein [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 386

 Score =  311 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 167/357 (46%), Positives = 244/357 (68%), Gaps = 6/357 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M  +K+   + +   LE A+  I+  +G G+IM+LG        +EV+ +G L LD+ALG
Sbjct: 1   MAAKKK--TMTREDILEVAIDDIRSKFGDGSIMRLGDDT--LANVEVIPTGILPLDVALG 56

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGGFP+GRIVE++GPE SGKTTLALH +A++QK GG  AF+DAEHALD   A+ LGV++ 
Sbjct: 57  IGGFPRGRIVEVFGPEGSGKTTLALHALAEAQKAGGVAAFIDAEHALDPRLAQSLGVNVA 116

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +L I+QPD+GEQAL I + LVRSGAVDI+V+DSVAALTP+AEI+G +G++  G+QARLMS
Sbjct: 117 DLYIAQPDSGEQALYILETLVRSGAVDIVVVDSVAALTPQAEIDGKIGDTQVGLQARLMS 176

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGS 238
            +LR+LTS+IS+S  I+VFINQ+R  I   +     ETTTGG ALKFY+SVR++++R  S
Sbjct: 177 YSLRRLTSAISKSNSIVVFINQLRATISTGYSRGPSETTTGGRALKFYTSVRVEVKRGKS 236

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           +   D   G++  +KVVKNK A PF+     ++YG+GI      +D+ + A ++ + G+W
Sbjct: 237 VTKGDDTIGHELWIKVVKNKQAPPFRTAHTTLVYGKGIPNNMSTVDMAIDAGVIKRKGSW 296

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            ++KG+ LGQG++N   +L E+ ++ E I   +   A       + +   ++ +D D
Sbjct: 297 LAYKGETLGQGKDNVANYLEEHPDLNEEIVKAVLDEAAKGLGFDIGKDPKDSDEDMD 353


>gi|308808812|ref|XP_003081716.1| recombination protein (ISS) [Ostreococcus tauri]
 gi|116060182|emb|CAL56241.1| recombination protein (ISS) [Ostreococcus tauri]
          Length = 396

 Score =  311 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 178/366 (48%), Positives = 248/366 (67%), Gaps = 7/366 (1%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           D  K  +   K KAL+  L +I   +G GAIM+LG  G     +    SG+L LD+ALG 
Sbjct: 27  DDAKSGSPDAKKKALQRVLDEIDSNFGAGAIMRLGEAGKA--KVATFPSGALTLDMALG- 83

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GRIVE+YGPESSGKTTLALH +A+ Q  GGT A +DAEHA D  Y+ +LG++L +
Sbjct: 84  GGLPRGRIVEVYGPESSGKTTLALHAMAEMQAIGGTVAIIDAEHAFDPEYSARLGLNLDD 143

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           +++ QP+TGE ALE+ D LVRS AVD+IV+DSVAAL PR+EIEG++G    G  ARLMSQ
Sbjct: 144 VIVCQPETGEMALEVVDTLVRSSAVDLIVVDSVAALVPRSEIEGEIGMVQVGAHARLMSQ 203

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI-- 239
           ALRK+  + +++   ++F+NQ+R K+GV++GSPE TTGGNALK+Y+SVRLDIRR   I  
Sbjct: 204 ALRKINVNAAKAGTTIIFLNQLRSKVGVIYGSPEVTTGGNALKYYASVRLDIRRKEVIKG 263

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           K  +   G + +VKV KNK+A P+K  EFD+++G GIS  G L+D G +  +VD+ GA++
Sbjct: 264 KSGEDDLGVRCKVKVAKNKVAPPYKVAEFDMLFGRGISKDGCLLDAGEQVGVVDRKGAYY 323

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD- 358
            + G++LGQGRE +  FL EN+ +   IE+ +R+        L  +P    +++   D  
Sbjct: 324 YYNGEKLGQGREKTLAFLDENLPVKGTIEADVRRKVAEKMAGLSNKPVAEEEEEIPDDAF 383

Query: 359 -TDNVE 363
             D+ E
Sbjct: 384 FGDDEE 389


>gi|219684834|ref|ZP_03539776.1| protein RecA [Borrelia garinii PBr]
 gi|219671779|gb|EED28834.1| protein RecA [Borrelia garinii PBr]
          Length = 362

 Score =  311 bits (795), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 177/331 (53%), Positives = 257/331 (77%), Gaps = 4/331 (1%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
            M  V+K +A+E A  QI++ +GKG+++++G    + +GI+ +SSGS+ LD ALGIGG+P
Sbjct: 14  NMERVNKEEAIELARVQIEKTFGKGSLIKMGE-SPVGKGIKSISSGSIVLDEALGIGGYP 72

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+ LGV++  L +S
Sbjct: 73  RGRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVSELWLS 132

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEI + L+RSG +D+IV+DSVAALTP+ EI+G+MG+S  G+QARLMS+ALRK
Sbjct: 133 QPDTGEQALEIAEHLIRSGGIDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRK 192

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DK 242
           +T  +S+S   ++FINQ+RM+IG+MFG+PETTTGGNALKFY+S+RL++R++  I      
Sbjct: 193 ITGILSKSNTCIMFINQIRMRIGIMFGNPETTTGGNALKFYASLRLEVRKIEQITRSGSS 252

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           D + GN+ RVK+VKNK+A PF++VE  I +G+GIS    ++D  +K +++ K+G+W+S  
Sbjct: 253 DDVIGNKIRVKIVKNKVAPPFRKVELVIYFGKGISREAGILDAALKYNLIQKTGSWYSLG 312

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
             +LGQGRE+   +L + +E+A +++  LR+
Sbjct: 313 DNKLGQGRESVIEYLNKEVELANDLDKRLRK 343


>gi|160901572|ref|YP_001567153.1| recombinase A [Petrotoga mobilis SJ95]
 gi|238687151|sp|A9BEV2|RECA_PETMO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|160359216|gb|ABX30830.1| recA protein [Petrotoga mobilis SJ95]
          Length = 368

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 183/365 (50%), Positives = 258/365 (70%), Gaps = 6/365 (1%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           + +    +K + LE  + ++++ +G G++M +G +G     + VV SG L LDIALG+GG
Sbjct: 3   KNDSKDANKEELLEKLVKELEKNHGTGSVMLMG-KGLDNSNLAVVPSGCLSLDIALGVGG 61

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
           +P+GRI+EIYG ESSGKTTLALH++A+ QK  G  AFVDAEHALD  YARKLGVD+  L+
Sbjct: 62  YPRGRIIEIYGNESSGKTTLALHSLAEVQKLNGIVAFVDAEHALDVEYARKLGVDVDKLI 121

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPD GEQALEI D LVRS  VD+IV+DSVAAL P+AEIEG MG+S  G+QARLMSQAL
Sbjct: 122 VSQPDYGEQALEIVDSLVRSNIVDLIVVDSVAALVPKAEIEGAMGDSHMGLQARLMSQAL 181

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKL  SI++SK I++FINQ+RMKIGV++G+PETTTGG ALKFY+++R+++R+   I++  
Sbjct: 182 RKLAGSINKSKSIVIFINQVRMKIGVVYGNPETTTGGIALKFYATIRVEVRKGNPIREGK 241

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
              GN+T +KVVKNK+A PFKQ   D+++G GI    ++ ++ V+  ++ + GAWFSF  
Sbjct: 242 DQIGNETTLKVVKNKVAPPFKQANVDMIFGRGIPKENDIFNIAVEEELIQRKGAWFSFIN 301

Query: 304 QR-----LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           +      LGQG+ NS  +L EN +I + +E  +R+   L+    L E   +      K  
Sbjct: 302 ENGEEISLGQGKTNSVSYLMENPDILDYLEYTIRKKHNLIIPDYLIEKFESNSSKGKKVK 361

Query: 359 TDNVE 363
           ++ ++
Sbjct: 362 SEELQ 366


>gi|55669151|gb|AAV54514.1| RecA protein [Burkholderia phymatum STM815]
          Length = 279

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 202/280 (72%), Positives = 248/280 (88%), Gaps = 1/280 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G++M+LG QG   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A
Sbjct: 1   GSVMRLG-QGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA+KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+I
Sbjct: 60  EMQKLGGTAAFIDAEHALDIQYAQKLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQG
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQG 279


>gi|22096049|sp|Q8RFY0|RECA_FUSNN RecName: Full=Protein RecA; AltName: Full=Recombinase A
          Length = 378

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 192/370 (51%), Positives = 266/370 (71%), Gaps = 13/370 (3%)

Query: 1   MDYRKEMNIVD--------KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGS 52
           M  +K+ ++ D        K KA++ A++ I + +G G IM+LG + S+   +E + +GS
Sbjct: 1   MAAKKDKSVPDSKITDKEGKEKAVKDAMAAITKGFGSGLIMKLGEKSSM--NVESIPTGS 58

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           + LDIALGIGG PKGRI+EIYG ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA
Sbjct: 59  INLDIALGIGGVPKGRIIEIYGAESSGKTTLALHVIAEAQKQGGTVAFIDAEHALDPVYA 118

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           + LGVD+  LLISQPD GEQALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M +   
Sbjct: 119 KALGVDIDELLISQPDYGEQALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQM 178

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QARLMS+ LRKLT ++++ K  ++FINQ+R KIGV +G   TTTGG ALKFYSSVR++
Sbjct: 179 GLQARLMSKGLRKLTGNLNKYKTTMIFINQIREKIGVTYGPTTTTTGGKALKFYSSVRME 238

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           ++++G++K  D   G++  VKV KNK+A PFK+  F+I+YG+GIS  GE+ID  V   ++
Sbjct: 239 VKKMGTVKQGDDPIGSEVIVKVTKNKVAPPFKEAAFEILYGKGISKVGEIIDAAVAKDVI 298

Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
            K+G+WFSF+ Q +GQG+E  +  L  N E+   +E  L++    +A   + +    +K 
Sbjct: 299 VKAGSWFSFRDQSIGQGKEKVRAELEINPELLAQVEKDLKEA---IAKGPVDKKKKKSKK 355

Query: 353 DADKDDTDNV 362
           +A  DDTD+ 
Sbjct: 356 EASSDDTDDE 365


>gi|296329366|ref|ZP_06871866.1| recombination protein A [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296153486|gb|EFG94304.1| recombination protein A [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 381

 Score =  309 bits (792), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 188/358 (52%), Positives = 258/358 (72%), Gaps = 4/358 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K  +   K KA++ A++ I + +G G IM+LG + S+   +E + +GS+ LDIALGIGG 
Sbjct: 16  KITDKEGKEKAVKDAMAAITKGFGSGLIMKLGEKSSM--NVESIPTGSINLDIALGIGGV 73

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EIYG ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGVD+  LLI
Sbjct: 74  PKGRIIEIYGAESSGKTTLALHVIAEAQKQGGTVAFIDAEHALDPVYAKALGVDIDELLI 133

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M +   G+QARLMS+ LR
Sbjct: 134 SQPDYGEQALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQMGLQARLMSKGLR 193

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT ++++ K  ++FINQ+R KIGV +G   TTTGG ALKFYSSVR++++++G++K  D 
Sbjct: 194 KLTGNLNKYKTTMIFINQIREKIGVTYGPTTTTTGGKALKFYSSVRMEVKKMGTVKQGDD 253

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
             G++  VKV KNK+A PFK+  F+I+YG+GIS  GE+ID  V   ++ K+G+WFSF+ Q
Sbjct: 254 PIGSEVIVKVTKNKVAPPFKEAAFEILYGKGISKVGEIIDAAVAKDVIVKAGSWFSFRDQ 313

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNA--GLVADSLLQEPAINTKDDADKDDTD 360
            +GQG+E  +  L  N E+   +E  L++    G V     +     + DD D ++ +
Sbjct: 314 SIGQGKEKVRAELETNPELLAQVEKDLKEAIAKGPVDKKKKKSKKEVSSDDTDDENLE 371


>gi|255578168|ref|XP_002529953.1| DNA repair protein reca, putative [Ricinus communis]
 gi|223530551|gb|EEF32430.1| DNA repair protein reca, putative [Ricinus communis]
          Length = 343

 Score =  309 bits (792), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 176/345 (51%), Positives = 242/345 (70%), Gaps = 8/345 (2%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           ++ I   +GKG++ +LGS G     +E   SG L LD ALG GG PKGRIVEIYGPESSG
Sbjct: 1   MNDINNSFGKGSVTRLGSAGGAL--VETFPSGCLTLDFALG-GGLPKGRIVEIYGPESSG 57

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTLALH IA+ QK GG    VDAEHA D  Y++ LGVD++NL++ QPD GE ALEI D 
Sbjct: 58  KTTLALHAIAEIQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDNGEMALEIADR 117

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           + RSGAVD+I +DSV+ALTPRAEIEG++G    G+QARLMSQALRK++ + S++ C LVF
Sbjct: 118 MCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLVF 177

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK--DKDSITGNQTRVKVVKN 257
           +NQ+R KIGV +G+PE T+GG ALKF++SVRL+IR  G IK    D   G + RV+V K+
Sbjct: 178 LNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSNGKIKSAKGDEDVGLRVRVRVQKS 237

Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317
           K++ P+KQ EF+I++GEG+S  G ++D      +V K G+W+S+   RLGQGR+ +  +L
Sbjct: 238 KVSRPYKQAEFEIIFGEGVSRLGCVLDCAEMMDVVVKKGSWYSYGEHRLGQGRDRALQYL 297

Query: 318 RENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           R+N  + E IE  +R    ++AD  +   ++ +++     + +NV
Sbjct: 298 RDNPHLHEEIEKKVRS---MMADGTVNTASLYSRNSPLPLEDENV 339


>gi|134122758|dbj|BAF49677.1| RecA [Physcomitrella patens]
          Length = 435

 Score =  309 bits (791), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 177/358 (49%), Positives = 247/358 (68%), Gaps = 8/358 (2%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K   ++AA+ QI + +GK  +M LG +   F  I+VV +GSL LDIALG+GG PKGR+VE
Sbjct: 77  KQSLIQAAIDQIAKKHGKETVMWLGRESRDF--IDVVPTGSLNLDIALGVGGLPKGRVVE 134

Query: 72  IYGPESSGKTTLALHTIAQSQKTG-GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           I+G E+SGKTT+ALH IAQ+QK G G C FVDAEHALD  +A  +GV+ K+LL  QPD  
Sbjct: 135 IFGQEASGKTTIALHVIAQAQKMGKGHCLFVDAEHALDMQFAEGIGVNTKDLLFVQPDYA 194

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQAL+  D  VRS  VD+IV+DSVAAL P+AE+EGDMG+S   +QARLMS+ALR+LT S+
Sbjct: 195 EQALDTVDHFVRSTGVDVIVVDSVAALVPKAELEGDMGDSQMALQARLMSKALRRLTHSL 254

Query: 191 SRSKCILVFINQMRMKIGVMF---GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           + S C+L+FINQ R K+        + E T GGNALKFY+SVRL +R+   ++  D   G
Sbjct: 255 NSSNCLLIFINQTRAKLNTYGGGGPTAEVTAGGNALKFYASVRLQVRKKEQLRRGDVPFG 314

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           +   VKVVKNK++ PF+  EFDI YG+GIS  GE++DLGVK  ++ +SG+W+S++G+   
Sbjct: 315 SSVIVKVVKNKVSPPFRTAEFDIEYGKGISRDGEVLDLGVKHGLLGQSGSWYSYEGKNFA 374

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNA--GLVADSLLQEPAINTKDDADKDDTDNVE 363
            GRE +K +L+E+ ++ + +   +++       A   L +     ++DA + D DN+E
Sbjct: 375 NGREGAKKYLQEHTDLTDALVVAIKEKILGQPRASGDLDDDGFIQEEDAFEADADNLE 432


>gi|332071925|gb|EGI82413.1| protein RecA [Streptococcus pneumoniae GA17545]
 gi|332072028|gb|EGI82515.1| protein RecA [Streptococcus pneumoniae GA17570]
 gi|332072136|gb|EGI82622.1| protein RecA [Streptococcus pneumoniae GA41301]
          Length = 339

 Score =  309 bits (791), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 184/324 (56%), Positives = 248/324 (76%), Gaps = 5/324 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   MQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     K++  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTG 240

Query: 281 ELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLV-A 339
           EL+ +     I+ K+GAW+S+K +++GQG EN+K +L E+ EI + I+  +R   GL+  
Sbjct: 241 ELLKIASDLDIIKKAGAWYSYKDEKIGQGSENAKKYLAEHPEIFDEIDKQVRSKFGLIDG 300

Query: 340 DSLLQEPAINTKDDADKDDTDNVE 363
           + + ++   N KD+  K++  N E
Sbjct: 301 EEVSEQDTENKKDEPKKEEAVNEE 324


>gi|269116001|gb|ACZ26520.1| RecA [Candidatus Erwinia dacicola]
          Length = 279

 Score =  309 bits (791), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 190/281 (67%), Positives = 238/281 (84%), Gaps = 2/281 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           +A +Q  G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 59  VAAAQHKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKI
Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNSSTLLIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSETRVKVVKNKIAAPFKQAE 238

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           F IMYGEGI+ FGEL+DLGVK  +++K+GAW+S+ G ++GQ
Sbjct: 239 FQIMYGEGINVFGELVDLGVKHKLIEKAGAWYSYNGDKIGQ 279


>gi|19703882|ref|NP_603444.1| recombinase A [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|19714044|gb|AAL94743.1| RecA protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 381

 Score =  309 bits (791), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 190/358 (53%), Positives = 261/358 (72%), Gaps = 5/358 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K  +   K KA++ A++ I + +G G IM+LG + S+   +E + +GS+ LDIALGIGG 
Sbjct: 16  KITDKEGKEKAVKDAMAAITKGFGSGLIMKLGEKSSM--NVESIPTGSINLDIALGIGGV 73

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EIYG ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGVD+  LLI
Sbjct: 74  PKGRIIEIYGAESSGKTTLALHVIAEAQKQGGTVAFIDAEHALDPVYAKALGVDIDELLI 133

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M +   G+QARLMS+ LR
Sbjct: 134 SQPDYGEQALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQMGLQARLMSKGLR 193

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT ++++ K  ++FINQ+R KIGV +G   TTTGG ALKFYSSVR++++++G++K  D 
Sbjct: 194 KLTGNLNKYKTTMIFINQIREKIGVTYGPTTTTTGGKALKFYSSVRMEVKKMGTVKQGDD 253

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
             G++  VKV KNK+A PFK+  F+I+YG+GIS  GE+ID  V   ++ K+G+WFSF+ Q
Sbjct: 254 PIGSEVIVKVTKNKVAPPFKEAAFEILYGKGISKVGEIIDAAVAKDVIVKAGSWFSFRDQ 313

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
            +GQG+E  +  L  N E+   +E  L++    +A   + +    +K +A  DDTD+ 
Sbjct: 314 SIGQGKEKVRAELEINPELLAQVEKDLKEA---IAKGPVDKKKKKSKKEASSDDTDDE 368


>gi|269116003|gb|ACZ26521.1| RecA [Candidatus Erwinia dacicola]
          Length = 279

 Score =  309 bits (790), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 191/281 (67%), Positives = 238/281 (84%), Gaps = 2/281 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q  G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQHKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKI
Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNSSTLLIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSETRVKVVKNKIAAPFKQAE 238

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           F IMYGEGI+ FGEL+DLGVK  +++K+GAW+S+ G ++GQ
Sbjct: 239 FQIMYGEGINVFGELVDLGVKHKLIEKAGAWYSYNGDKIGQ 279


>gi|294783050|ref|ZP_06748374.1| protein RecA [Fusobacterium sp. 1_1_41FAA]
 gi|294479928|gb|EFG27705.1| protein RecA [Fusobacterium sp. 1_1_41FAA]
          Length = 379

 Score =  309 bits (790), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 194/373 (52%), Positives = 264/373 (70%), Gaps = 12/373 (3%)

Query: 1   MDYRKEMNIVD--------KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGS 52
           M  +K+ N  D        K KA+  A++ I + +G G IM+LG + S+   +E + +GS
Sbjct: 1   MAAKKDKNTPDSKITDKEGKQKAVNDAMAAITKGFGAGLIMKLGEKSSM--NVESIPTGS 58

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           + LDIALGIGG PKGRI+E+YG ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA
Sbjct: 59  INLDIALGIGGVPKGRIIEVYGAESSGKTTLALHIIAEAQKQGGTVAFIDAEHALDPVYA 118

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           + LGVD+  LLISQPD GEQALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M +   
Sbjct: 119 KALGVDIDELLISQPDYGEQALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQM 178

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QARLMS+ LRKLT ++++ K  ++FINQ+R KIGV +G   TTTGG ALKFY+SVRL+
Sbjct: 179 GLQARLMSKGLRKLTGNLNKYKTTMIFINQIREKIGVTYGPTTTTTGGKALKFYASVRLE 238

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           ++++G++K  D   G++  VKV KNK+A PFK+  F+I+YG+GIS  GE+ID  V   ++
Sbjct: 239 VKKMGTVKQGDDPIGSEVVVKVTKNKVAPPFKEAAFEILYGKGISRVGEIIDAAVARDVI 298

Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ--NAGLVADSLLQEPAINT 350
            K+G+WFSF+ Q +GQG+E  +I L  N E+   +E+ L++  + G V     +      
Sbjct: 299 VKAGSWFSFREQSIGQGKEKVRIELESNPELLAQVEADLKEAISKGPVDKKKKKSKKELA 358

Query: 351 KDDADKDDTDNVE 363
            DD D DD +  E
Sbjct: 359 SDDVDTDDAELDE 371


>gi|157100333|emb|CAP03332.1| RecA protein [Vibrio aestuarianus]
          Length = 278

 Score =  309 bits (790), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 187/280 (66%), Positives = 237/280 (84%), Gaps = 2/280 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTL 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RS
Sbjct: 59  TLELIAAAQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GA+D+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+
Sbjct: 119 GAIDVIVVDSVAALTPKAEIEGEMGDSXMGLQARMLSQAMRKLTGNLKQSNCMCIFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PF
Sbjct: 179 RMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
           KQ E  I+YG+G +  GEL+DLGVK  +V+K+GAW+S+ G
Sbjct: 239 KQAETQILYGQGFNREGELVDLGVKNKLVEKAGAWYSYNG 278


>gi|308237897|emb|CBK52095.1| RecA protein [Acidithiobacillus ferrooxidans]
          Length = 268

 Score =  308 bits (789), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 197/268 (73%), Positives = 235/268 (87%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LD+ALG+GG P+GR+VEIYGPESSGKTTL LH IA  Q  GGT AF+DAEHALD  YA K
Sbjct: 1   LDLALGVGGLPRGRVVEIYGPESSGKTTLTLHAIASCQAAGGTAAFIDAEHALDPSYAHK 60

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           LGVDL+NLLISQPDTGEQALEI DMLVRSGAVD+IVIDSVAALTP+AEIEGDMG+S  G+
Sbjct: 61  LGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGDMGDSHVGL 120

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
           QARLMSQALRKLT++ISR+  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIR
Sbjct: 121 QARLMSQALRKLTANISRTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIR 180

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK 294
           R+G+IK  D + GN TRVKVVKNK+A PF++ EF I YGEGIS   EL+DLGVK  IV+K
Sbjct: 181 RIGAIKKSDEVVGNDTRVKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVKFDIVEK 240

Query: 295 SGAWFSFKGQRLGQGRENSKIFLRENIE 322
           SGAW+S++G+R+GQG++N+  +L+E+ E
Sbjct: 241 SGAWYSYQGERIGQGKDNAPQYLKEHPE 268


>gi|289524264|ref|ZP_06441118.1| protein RecA [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502920|gb|EFD24084.1| protein RecA [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 382

 Score =  308 bits (789), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 183/360 (50%), Positives = 251/360 (69%), Gaps = 11/360 (3%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K+ ++  +   L+ A+S I+  +G+GAIM+LG  G     +EV+ +G L LD+ALG GG 
Sbjct: 3   KKESVKTREDILQQAISDIKSKFGEGAIMRLGDGG--VSSVEVIPTGILPLDVALGTGGL 60

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GRI+EI+GPE SGKTTLALH +A++QK GG  AF+DAEHALD   A  +GVD K+L I
Sbjct: 61  PRGRIIEIFGPEGSGKTTLALHPVAEAQKLGGVAAFIDAEHALDPSLAISVGVDTKSLFI 120

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD+GEQAL I D LVRSGAVDIIV+DSVAALTP+AEI+G +GE+  G+QARLMS ALR
Sbjct: 121 SQPDSGEQALYILDSLVRSGAVDIIVVDSVAALTPQAEIDGKIGETQVGLQARLMSYALR 180

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           +L +SIS+SKC++VFINQ+R +IG+       ETTTGG ALKFYSSVR+++RR  SI   
Sbjct: 181 RLAASISKSKCVVVFINQLRAQIGMSGYGGPQETTTGGRALKFYSSVRIEVRRGKSITKG 240

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           DSI G++  +KVVKNK A PF+     ++YG GI     ++D+ +   ++ K G+W ++K
Sbjct: 241 DSIIGHELWIKVVKNKQAPPFRVAHASLIYGRGIPKAMAILDMALDMDVIKKRGSWLAYK 300

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLR----QNAGLVADSLLQEPAINTKDDADKDD 358
           G+ LGQG+E     + E  E+ E I   ++    + AGLV    L  P    ++DA +++
Sbjct: 301 GETLGQGKEKVAQLMEEQPELMEEIAQEVKSILAETAGLVN---LSPPRYAKEEDASEEE 357


>gi|148887239|emb|CAM12786.1| recombinase A [Ochrobactrum sp. PR 17]
          Length = 268

 Score =  308 bits (789), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 220/266 (82%), Positives = 248/266 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE VS+GSL LDIALG+GG PKGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDA
Sbjct: 3   EIETVSTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEI
Sbjct: 63  EHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+SLPG+QARLMSQALRKLT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 123 EGEMGDSLPGLQARLMSQALRKLTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNAL 182

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+SVRLDIRR+GSIK++D + GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+
Sbjct: 183 KFYASVRLDIRRIGSIKERDEVVGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKMGELV 242

Query: 284 DLGVKASIVDKSGAWFSFKGQRLGQG 309
           DLGVKA +V+KSGAWFS+  QRLGQG
Sbjct: 243 DLGVKAGVVEKSGAWFSYNSQRLGQG 268


>gi|7798682|gb|AAF69794.1|AF149819_1 RecA [Peanut witches'-broom phytoplasma]
          Length = 336

 Score =  308 bits (789), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 161/331 (48%), Positives = 241/331 (72%), Gaps = 4/331 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K   L   + +I++++GKG+IMQ+       E IE +S+GSLGLDIAL IGG P+GRIVE
Sbjct: 7   KKPPLTQTICEIEKIFGKGSIMQM--NSDKVEPIESISTGSLGLDIALSIGGLPRGRIVE 64

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           I+GPES+GKTTLALH IA++QK+GGT AF+DAE   +  YA+ +GVD   +LIS PD+GE
Sbjct: 65  IFGPESAGKTTLALHVIAEAQKSGGTVAFIDAE-FFNFNYAKTIGVDCNKMLISHPDSGE 123

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
            AL I ++L     ++++V+DSVAAL P AE+ GD+G+S  G+ AR+M+QALRK +  + 
Sbjct: 124 VALNIANLLFEKMLLNLVVVDSVAALAPLAELNGDVGDSYVGIHARMMNQALRKQSHIVY 183

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV-GSIKDKDSITGNQT 250
           +S  IL++INQ+R K+G+ FG+ E T GG  LKF++SVRLD+R+    IK+ D + G +T
Sbjct: 184 KSNAILIYINQLREKVGITFGNNEVTPGGKGLKFFTSVRLDVRKTSELIKENDQVVGVKT 243

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
            V++VK+K+ SP+K V FDI+YG+GIS   E++DL V  +++ K+G W+S+  Q++GQGR
Sbjct: 244 NVRIVKSKVCSPYKTVSFDILYGKGISKVSEILDLAVSLNLIKKNGMWYSYNNQQIGQGR 303

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           E ++ FL ++ ++A  +E  +R+N  L +++
Sbjct: 304 EKAREFLLKHPDLAHELELTIRKNYNLSSNN 334


>gi|55669153|gb|AAV54515.1| RecA protein [Burkholderia sacchari]
          Length = 279

 Score =  308 bits (788), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 204/280 (72%), Positives = 246/280 (87%), Gaps = 1/280 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRLGD-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I ++ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKKTNCMVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + G++TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGSETRVKVVKNKVSPPFREAVFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQG
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQG 279


>gi|148879019|emb|CAM07025.1| RecA protein [Mycobacterium sp. MHSD3]
          Length = 276

 Score =  308 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 183/276 (66%), Positives = 230/276 (83%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
             + + I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q  GG  
Sbjct: 1   DEVRQPISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGIA 60

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AF+DAEHALD  YA+KLGVD  +LL+SQPDTGEQALEI DMLVRSGA+ +IVIDSVAAL 
Sbjct: 61  AFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAISLIVIDSVAALV 120

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           PRAEIEG+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFGSPETTT
Sbjct: 121 PRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTT 180

Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISF 278
           GG ALKFYSSVRLD+RR+ ++KD     GN+TRVKVVKNK++ PFKQ EFDI+YG+GIS 
Sbjct: 181 GGKALKFYSSVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGKGISK 240

Query: 279 FGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
            G LID+GV+   + KSG+WF+++G++LGQG+EN++
Sbjct: 241 EGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGKENAR 276


>gi|224534198|ref|ZP_03674776.1| protein RecA [Borrelia spielmanii A14S]
 gi|224514300|gb|EEF84616.1| protein RecA [Borrelia spielmanii A14S]
          Length = 366

 Score =  308 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 177/330 (53%), Positives = 257/330 (77%), Gaps = 4/330 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           +   +K +A+E A  QI++ +GKG+++++G    + +GI+ +SSGS+ LD ALGIGG+P+
Sbjct: 15  IERANKEEAIELARVQIEKTFGKGSLIKMGE-SPVGKGIKSMSSGSIVLDEALGIGGYPR 73

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+ LGV++  L +SQ
Sbjct: 74  GRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVSELWLSQ 133

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI + L+RSG +D+IV+DSVAALTP+ EI+G+MG+S  G+QARLMS+ALRK+
Sbjct: 134 PDTGEQALEIAEHLIRSGGIDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKI 193

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI-KDK--D 243
           T  +S+S   ++FINQ+RM+IG+MFG+PETTTGGNALKFYSS+RL++R++  I K    D
Sbjct: 194 TGILSKSNTCIMFINQIRMRIGIMFGNPETTTGGNALKFYSSLRLEVRKIEQITKSGSSD 253

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+ RVK+VKNK+A PF++VE  I +G+GIS    ++D  +K +++ K+G+W+S   
Sbjct: 254 DVIGNKIRVKIVKNKVAPPFRKVELVIYFGKGISREAGILDSAIKHNLIQKTGSWYSLGD 313

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQ 333
            +LGQGRE+   +L + +E+A +++  LR+
Sbjct: 314 NKLGQGRESVIEYLSKEVELANDLDKRLRE 343


>gi|21905551|gb|AAM80407.1| putative recombination protein [Streptococcus pyogenes MGAS315]
          Length = 326

 Score =  308 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 180/312 (57%), Positives = 238/312 (76%), Gaps = 4/312 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD
Sbjct: 2   SSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALD 61

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
             YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G
Sbjct: 62  PAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIG 121

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+S
Sbjct: 122 DSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYAS 181

Query: 229 VRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           VRLD+R    IK     KDS  G +T++KVVKNK+A PFK  E +IMYGEGIS  GEL+ 
Sbjct: 182 VRLDVRGTTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVK 241

Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
           +     I+ K+GAWFS+ G+++GQG EN+K +L ++ ++ + I+  +R   GL+ +S  +
Sbjct: 242 IASDLDIIQKAGAWFSYNGEKIGQGSENAKRYLADHPQLFDEIDRKVRVKFGLLEESEEE 301

Query: 345 EPAINTKDDADK 356
                  ++ D 
Sbjct: 302 SAMAVASEETDD 313


>gi|51598395|ref|YP_072583.1| recombinase A [Borrelia garinii PBi]
 gi|59798194|sp|Q662N0|RECA_BORGA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|51572966|gb|AAU06991.1| recA protein [Borrelia garinii PBi]
          Length = 362

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 176/330 (53%), Positives = 256/330 (77%), Gaps = 4/330 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M  V K +A+E A  QI++ +GKG+++++G   S+ +GI+ +SSGS+ LD ALGIGG+P+
Sbjct: 15  MERVKKEEAIELARVQIEKTFGKGSLIKIGE-SSVGKGIKSISSGSIVLDEALGIGGYPR 73

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHAL+ +YA+ LGV++  L +SQ
Sbjct: 74  GRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALNPVYAKALGVNVSELWLSQ 133

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI + L+RSG +D+IV+DSVAALTP+ EI+G+MG+S  G+QARLMS++LRK+
Sbjct: 134 PDTGEQALEIAEHLIRSGGIDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKSLRKI 193

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKD 243
           T  +S+S   ++FINQ+RM+IG+MFG+PETT GGNALKFYSS+RL++R++  I      D
Sbjct: 194 TGILSKSNTCIMFINQIRMRIGIMFGNPETTAGGNALKFYSSLRLEVRKIEQITRSGSSD 253

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+ RVK+VKNK+A PF++VE  I +G+GIS    ++D  +K +++ K+G+W+S   
Sbjct: 254 DVIGNKIRVKIVKNKVAPPFRKVELVIYFGKGISREAGILDAALKHNLIQKTGSWYSLGN 313

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQ 333
            +LGQGRE+   +L + +E+A +++  LR+
Sbjct: 314 NKLGQGRESVVEYLNKEVELANDLDKRLRK 343


>gi|162424783|gb|ABX90069.1| RecA protein [Burkholderia sabiae]
          Length = 278

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 201/279 (72%), Positives = 246/279 (88%), Gaps = 1/279 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G++M+LG QG   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A
Sbjct: 1   GSVMRLG-QGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA+KLGV++  LL+SQPDTGEQALEI D LVRSG++D+I
Sbjct: 60  EMQKLGGTAAFIDAEHALDIQYAQKLGVNVSELLVSQPDTGEQALEIADALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQ
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQ 278


>gi|219685400|ref|ZP_03540219.1| protein RecA [Borrelia garinii Far04]
 gi|219673173|gb|EED30193.1| protein RecA [Borrelia garinii Far04]
          Length = 351

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 174/327 (53%), Positives = 254/327 (77%), Gaps = 4/327 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           V+K +A+E A  QI++ +GKG+++++G    + +GI+ +SSGS+ LD ALGIGG+P+GRI
Sbjct: 7   VNKEEAIELARVQIEKTFGKGSLIKMGE-SPVGKGIKSISSGSIVLDEALGIGGYPRGRI 65

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+ LGV++  L +SQPDT
Sbjct: 66  IEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVSELWLSQPDT 125

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + L+RSG +D+IV+DSVAALTP+ EI+G+MG+S  G+QARLMS+ALRK+T  
Sbjct: 126 GEQALEIAEHLIRSGGIDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKITGI 185

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKDSIT 246
           +S+S   ++FINQ+RM+IG+MFG+PETTTGGNALKFY+S+RL++R++  I      D + 
Sbjct: 186 LSKSNTCIMFINQIRMRIGIMFGNPETTTGGNALKFYASLRLEVRKIEQITRSGSSDDVI 245

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ RVK+VKNK+A PF++VE  I +G+GIS    ++D  +K +++ K+G+W+S    +L
Sbjct: 246 GNKIRVKIVKNKVAPPFRKVELVIYFGKGISREAGILDAALKHNLIQKTGSWYSLGDNKL 305

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333
           GQGRE+   +  + +E+  +++  LR+
Sbjct: 306 GQGRESVIEYFNKEVELVNDLDKRLRK 332


>gi|302023157|ref|ZP_07248368.1| recombinase A [Streptococcus suis 05HAS68]
          Length = 330

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 180/316 (56%), Positives = 239/316 (75%), Gaps = 4/316 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSGSL +DIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD
Sbjct: 2   SSGSLSIDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKDGGIAAFIDAEHALD 61

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
             YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G
Sbjct: 62  PAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIG 121

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QAR+MSQA+RKL +SI+++K + +FINQ+R K+GVMFG+PETT GG ALKFY+S
Sbjct: 122 DSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYAS 181

Query: 229 VRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           VR+D+R    IK     KD   G +T+VK+VKNK+A PFK+   +IMYGEGIS  GELI+
Sbjct: 182 VRMDVRGNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIE 241

Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
           +G    I+ K+GAW+S+ G+++GQG EN+K FL +N  I + I+  +R + GL+    ++
Sbjct: 242 IGSNLGIIQKAGAWYSYNGEKIGQGSENAKKFLADNPAIFDEIDRKIRVHYGLIEADGVE 301

Query: 345 EPAINTKDDADKDDTD 360
           E A        ++  D
Sbjct: 302 EVATEEAPVVAEEIQD 317


>gi|282855978|ref|ZP_06265269.1| RecA protein [Pyramidobacter piscolens W5455]
 gi|282586197|gb|EFB91474.1| RecA protein [Pyramidobacter piscolens W5455]
          Length = 386

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 174/357 (48%), Positives = 242/357 (67%), Gaps = 7/357 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   K+   + +   LE AL  I+  +G G+IM+LG + +    +EV+ +G L LD+ALG
Sbjct: 1   MAEAKKGKKLTREDILEQALDDIRSKFGDGSIMRLGERNTA--NVEVIPTGILPLDVALG 58

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG P+GRIVE++GPE SGKTTLALH IA++QK GG  AF+DAEHALD   A  LGV ++
Sbjct: 59  IGGLPRGRIVEVFGPEGSGKTTLALHAIAEAQKAGGVAAFIDAEHALDPRLAAALGVQIE 118

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +L +SQPD+GEQAL I + LVRSGAVDI+V+DSVAALTP+AEI+G +GES  G+QARLMS
Sbjct: 119 SLYLSQPDSGEQALFILETLVRSGAVDIVVVDSVAALTPQAEIDGTIGESQVGLQARLMS 178

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGS 238
             LR+LT+SI+RS C++VFINQ+R  I   +     ETTTGG ALKFY+SVR+++RR   
Sbjct: 179 YGLRRLTASIARSNCVVVFINQLRATIPTGYSKGPTETTTGGRALKFYTSVRIEVRRGKQ 238

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           I   D + G++  +KVVKNK A PF+     ++YG+GI     ++D+ + A++V + G+W
Sbjct: 239 ISKGDDVIGHELYIKVVKNKQAPPFRSAHCSLIYGKGIPLTMSIVDMAIDANVVKRKGSW 298

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            ++KG+ L QG++    FL ++ E+   I   +   A   A+ L    A    DD D
Sbjct: 299 LTYKGETLAQGKDRLAEFLDKSPEMLAEIRKTVLDQA---AEGLGFYTAPEKSDDED 352


>gi|223936230|ref|ZP_03628143.1| recA protein [bacterium Ellin514]
 gi|223895092|gb|EEF61540.1| recA protein [bacterium Ellin514]
          Length = 389

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 190/341 (55%), Positives = 252/341 (73%), Gaps = 3/341 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + + LEAALS I + YG+G+IM+LG   +  + IEV+ +G+LGLD+ALG+GG P+GR+VE
Sbjct: 50  RQRDLEAALSTIIKSYGEGSIMRLGE-ANAHQAIEVIPTGALGLDLALGVGGLPRGRVVE 108

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA +QK GG  AF+DAEHALD  YA+KLGV+L +LL+SQPD GE
Sbjct: 109 IYGPESSGKTTLMLHVIANAQKMGGLAAFIDAEHALDPGYAKKLGVNLDDLLVSQPDCGE 168

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           +AL I + L RS A+D+IVIDSVAAL P+AE+EG+MG +  GMQARLMSQ LRKLT+ ++
Sbjct: 169 EALTICETLARSNALDVIVIDSVAALVPKAELEGEMGMATMGMQARLMSQGLRKLTAILN 228

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSITGNQT 250
           +SK   VF NQ+R K+GVMFG+PETT GG ALKFY+SVRLDIRR  ++KD   +  GN  
Sbjct: 229 KSKTTCVFTNQLREKVGVMFGNPETTPGGKALKFYASVRLDIRRKDTLKDAAGNAIGNHV 288

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A PF + EFDI+Y  GI+  G ++D+G++  +VDK GAW  F G  +GQG+
Sbjct: 289 KVKVVKNKVAPPFSETEFDIIYNHGINKEGSILDVGIENGVVDKKGAWLQFAGDLIGQGK 348

Query: 311 ENSKIFLRENIEIAENIESLLRQN-AGLVADSLLQEPAINT 350
           E ++  L E  E+A+ I   +    +G+  ++   E A   
Sbjct: 349 EAAQRALAEKPELAKKIVEAIMAKRSGVTTEAAKPEVAKAA 389


>gi|296127416|ref|YP_003634668.1| recA protein [Brachyspira murdochii DSM 12563]
 gi|296019232|gb|ADG72469.1| recA protein [Brachyspira murdochii DSM 12563]
          Length = 428

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 175/360 (48%), Positives = 247/360 (68%), Gaps = 9/360 (2%)

Query: 1   MDYRK----EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLD 56
           M  +K    E+    KS+A+EA   QI + YG G+ M+LGS  ++   ++V+S+G+L LD
Sbjct: 1   MATKKKETAEVKKDGKSEAIEAITDQINKKYGPGSFMRLGSNKTV--NVDVISTGALTLD 58

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
            ALG+GG P+GRI+EIYG E+SGKTTL LH IA++QK GG  AF+DAEHALD +YA  LG
Sbjct: 59  HALGVGGVPRGRIIEIYGHEASGKTTLTLHIIAEAQKAGGYAAFIDAEHALDPVYASALG 118

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           VD+ NL ISQP++GE+ALEI + +V S A DI+V+DSVAAL  +AE+ GD+G++   +QA
Sbjct: 119 VDIDNLYISQPNSGEEALEILEKVVSSTAFDIVVVDSVAALVSKAELAGDIGDAHIALQA 178

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG---SPETTTGGNALKFYSSVRLDI 233
           RLMS ALRKLT+ IS +   ++FINQ+R  I          ETTTGG ALKFYSSVRLDI
Sbjct: 179 RLMSHALRKLTAIISNTNTAVIFINQLRQNIATTGYGAGPTETTTGGKALKFYSSVRLDI 238

Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVD 293
           RR   IK  D   G++ ++KVVKNK++SPFK V  +I++G+GIS  G LIDL ++A I+ 
Sbjct: 239 RRTEWIKKGDETIGHKVKIKVVKNKLSSPFKVVNLEIIFGKGISSEGLLIDLAMEAKIIT 298

Query: 294 KSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           +SGAWF + G+++ QG+E  +  L  + ++   +E  +R+   +     ++E      ++
Sbjct: 299 RSGAWFYYNGEQIAQGKEKVRELLASDPKMRMELEIQIRETLNMGGADKVKEKLAEYLEE 358


>gi|145351664|ref|XP_001420188.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580421|gb|ABO98481.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 369

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 173/343 (50%), Positives = 241/343 (70%), Gaps = 9/343 (2%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL   L +I   +G GAIM+LG  G     +    SG++ LDIALG GG P+GRIVE
Sbjct: 10  KKKALARVLDEIDSNFGAGAIMRLGEAGKA--KVATFPSGAMTLDIALG-GGLPRGRIVE 66

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH +A+ QK GGT A +DAEHA D  Y+++LG+++ ++++ QP+TGE
Sbjct: 67  IYGPESSGKTTLALHAMAEMQKLGGTVAMIDAEHAFDPEYSQRLGLNVDDVIVCQPETGE 126

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
            ALE+ D LVRS AVD+I +DSVAAL PR+EIEG++G    G  ARLMSQALRK+  + +
Sbjct: 127 MALEVVDTLVRSSAVDLICVDSVAALVPRSEIEGEIGMVQVGAHARLMSQALRKINVNAA 186

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD--KDSITGNQ 249
           ++   ++F+NQ+R K+GV++GSPE TTGGNALK+YSSVRLDIRR   IK    +  TG +
Sbjct: 187 KAGTTIIFLNQLRSKVGVIYGSPEVTTGGNALKYYSSVRLDIRRKEVIKGKAGEDDTGVR 246

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VKV KNK+A P+K  EFD+++G G+S  G ++D G +   +++ GA++ F G++LGQG
Sbjct: 247 CKVKVAKNKVAPPYKIAEFDMLFGRGVSRDGCMLDAGEQVGTIERKGAYYYFNGEKLGQG 306

Query: 310 RENSKIFLRENIEIAENIESLLR----QNAGLVADSLLQEPAI 348
           RE +  FL EN E+   IE+ +R    +  GL+  ++  +   
Sbjct: 307 REKTLSFLDENPEMKATIETDVRARLAEKMGLLNGTIAPKATE 349


>gi|260654226|ref|ZP_05859716.1| protein RecA [Jonquetella anthropi E3_33 E1]
 gi|260630859|gb|EEX49053.1| protein RecA [Jonquetella anthropi E3_33 E1]
          Length = 373

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 157/341 (46%), Positives = 240/341 (70%), Gaps = 8/341 (2%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K      K + L  A+ +I+  +G+G+IM+LG   +I   +  +S+G L LD+ALG+GG 
Sbjct: 3   KRQAPTTKEEVLTQAIDEIRSKFGEGSIMRLGDNKAIQADV--ISTGILPLDVALGVGGL 60

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GRIVEI+GPE +GKTTLALH IA++Q +GG  AF+DAEHALD   A  LGVD+++L +
Sbjct: 61  PRGRIVEIFGPEGTGKTTLALHAIAETQASGGIAAFIDAEHALDPRLAAALGVDVESLYL 120

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           +QPD+GEQAL I + LVRS AVD++V+DSVAALTP+AEI+G +G+   G+QARLMS  LR
Sbjct: 121 AQPDSGEQALYILETLVRSSAVDMVVVDSVAALTPQAEIDGQIGDPSVGLQARLMSYGLR 180

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           +LT++I++S+CI++FINQ+R  I   +     ETTTGG ALKFY+SVR+++RR  +I   
Sbjct: 181 RLTAAIAKSRCIVIFINQLRATISTGYARGPQETTTGGRALKFYTSVRIEVRRGKNITKG 240

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           +   G++  +KVVKNK+A PF+     ++YG+G+     ++D+ + A+I+ + G+W ++K
Sbjct: 241 EETIGHELFIKVVKNKLAPPFRTAHASLIYGQGVPKTMAVVDMSMDANILKRKGSWVTYK 300

Query: 303 GQRLGQGRENSKIFLRENIEIAENIE----SLLRQNAGLVA 339
           G+ + QG+E    +L E+ ++ E I+    + + ++ G V 
Sbjct: 301 GETIAQGKEKVAAYLDEHPDLKEEIKAAVLAKVSESLGFVT 341


>gi|300871501|ref|YP_003786374.1| recA protein [Brachyspira pilosicoli 95/1000]
 gi|300689202|gb|ADK31873.1| recA protein [Brachyspira pilosicoli 95/1000]
          Length = 396

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 176/368 (47%), Positives = 249/368 (67%), Gaps = 9/368 (2%)

Query: 1   MDYRK----EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLD 56
           M  +K    E+    KS+A+EA   QI + YG G+ M+LGS  ++   ++V+S+G+L LD
Sbjct: 1   MATKKKETAEVKKDGKSEAIEAITDQINKKYGPGSFMRLGSNKTV--NVDVISTGALTLD 58

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
            ALG+GG P+GRI+EIYG E+SGKTTL LH IA++QK GG  AF+DAEHALD +YA  LG
Sbjct: 59  HALGVGGVPRGRIIEIYGHEASGKTTLTLHIIAEAQKAGGYAAFIDAEHALDPVYASALG 118

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           VD+ NL ISQP++GE+ALEI + +V S A DI+V+DSVAAL  +AE+ GD+G++   +QA
Sbjct: 119 VDIDNLYISQPNSGEEALEILEKVVSSTAFDIVVVDSVAALVSKAELAGDIGDAHIALQA 178

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG---SPETTTGGNALKFYSSVRLDI 233
           RLMS ALRKLT+ IS +   ++FINQ+R  I          ETTTGG ALKFYSSVRLDI
Sbjct: 179 RLMSHALRKLTAIISNTNTAVIFINQLRQNIATTGYGAGPTETTTGGKALKFYSSVRLDI 238

Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVD 293
           RR   IK  D   G++ ++KVVKNK++SPFK V  +I++G+GIS  G LIDL ++A I+ 
Sbjct: 239 RRTEWIKKGDDTIGHKVKIKVVKNKLSSPFKVVNLEIIFGKGISSEGLLIDLAMEAKIIT 298

Query: 294 KSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           +SGAWF + G+++ QG+E  +  L  + ++   +E  +R+   +     ++E      ++
Sbjct: 299 RSGAWFYYNGEQIAQGKEKVRELLAADPKMRMELEIQIREALNMGGVDKVKEKLEEYLEN 358

Query: 354 ADKDDTDN 361
            +     N
Sbjct: 359 KNPTVDKN 366


>gi|687759|gb|AAA62510.1| RecA [uncultured Gram-positive bacterium]
          Length = 319

 Score =  307 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 186/303 (61%), Positives = 237/303 (78%), Gaps = 2/303 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  AL+ AL +I++ +GKG+IM LG        +E   SGS+ LD+ALG+GG+PKGRI+E
Sbjct: 19  RKAALDEALKRIEKNFGKGSIMVLGDNA--LTQVETYPSGSVKLDVALGVGGYPKGRIIE 76

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH +A+ QK GGT A++DAE+ALD  YA  LGV    LL+SQPDTGE
Sbjct: 77  IYGPESSGKTTLALHAVAEVQKAGGTAAYIDAENALDVKYAEALGVKKDELLLSQPDTGE 136

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           Q LEI D LV+SGAVDIIV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL  +++
Sbjct: 137 QGLEIADALVQSGAVDIIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGTLN 196

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           R+  + +FINQ+R KIGVMFG+PETT GG ALKFYS++RL++RR   IKD   +TGN T+
Sbjct: 197 RTGTVAIFINQIREKIGVMFGNPETTPGGRALKFYSTIRLEVRRSTQIKDGTDVTGNLTK 256

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKVVKNK+A PFK  E DIMYG+GIS  GE++DLG +  I+ K+GA++ +   ++GQGRE
Sbjct: 257 VKVVKNKVAPPFKVAEVDIMYGKGISQTGEILDLGAEQEIIRKAGAFYYYGDIKVGQGRE 316

Query: 312 NSK 314
            +K
Sbjct: 317 KAK 319


>gi|55669149|gb|AAV54513.1| RecA protein [Burkholderia caribensis]
          Length = 279

 Score =  307 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 203/280 (72%), Positives = 248/280 (88%), Gaps = 1/280 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G++M+LG QG   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSVMRLG-QGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA+KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+I
Sbjct: 60  EMQKIGGTAAFIDAEHALDIQYAQKLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQG
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYSGERIGQG 279


>gi|226357578|ref|YP_002787318.1| recombinase A [Deinococcus deserti VCD115]
 gi|226357690|ref|YP_002787429.1| recombinase A [Deinococcus deserti VCD115]
 gi|226319569|gb|ACO47564.1| putative recombinase A [Deinococcus deserti VCD115]
 gi|226319932|gb|ACO47925.1| putative recombinase A [Deinococcus deserti VCD115]
          Length = 344

 Score =  307 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 188/344 (54%), Positives = 257/344 (74%), Gaps = 4/344 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KAL+ A+SQI++ +GKG+IM+LG+   +   ++ +S+GSL LD+ALG+GG PKGR+
Sbjct: 3   TDQHKALQTAMSQIEKQFGKGSIMKLGADSKL--DVQAISTGSLSLDVALGVGGIPKGRV 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
            EIYGPES GKTTLAL  IAQSQK GGTCAF+DAEHALD +YAR LGV+  +LL+SQPD 
Sbjct: 61  TEIYGPESGGKTTLALSIIAQSQKAGGTCAFIDAEHALDPVYARALGVNTDDLLVSQPDN 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI ++L+RSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLTS 
Sbjct: 121 GEQALEIMELLIRSGAIDVVVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTSI 180

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG--SIKDKDSITG 247
           +S++    +FINQ+R KIGVM+G+PETTTGG ALKFY+SVRLD+R++G  S    +    
Sbjct: 181 VSKTGTAAIFINQVREKIGVMYGNPETTTGGKALKFYASVRLDVRKMGGKSTMVDNVAVS 240

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           +  +VK VKNK+A PFK+VE  + YG G     +L+ L     ++ K+G+++S+  +R+G
Sbjct: 241 HSVKVKTVKNKVAPPFKEVELTLRYGHGFDAMDDLVTLATTFEVIKKAGSFYSYGDERIG 300

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           QG+E +  FL E  ++  +I   +         + L EPA++  
Sbjct: 301 QGKEKAIAFLSERPDLLADIRERVLAQMRGTPVAPLPEPALSAD 344


>gi|299115656|emb|CBN75857.1| recombinase A [Ectocarpus siliculosus]
          Length = 453

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 180/348 (51%), Positives = 252/348 (72%), Gaps = 6/348 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           + +AL+  L QI+R YG+G+I+++G   S+   +E  S+GS+ LDIALG GG+P+GR+VE
Sbjct: 80  RRQALDGVLHQIERCYGRGSILKMGDTTSM--DVETSSTGSMTLDIALG-GGYPRGRVVE 136

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALH +A+ QKTGG  AF+DAEHALD  YA +LGVD+ +LL+SQPD+GE
Sbjct: 137 IYGPESSGKTTLALHALAEIQKTGGVAAFIDAEHALDPAYADRLGVDVADLLVSQPDSGE 196

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
            AL++ D LVRS AVD++V+DSVAAL PRAE+EG+M +   G+QARLMS+A+RK+T S+S
Sbjct: 197 MALDVVDQLVRSNAVDMVVVDSVAALVPRAELEGEMADMQMGLQARLMSKAMRKVTGSLS 256

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S+C +VF+NQ+R KIGV++GSPE T+GGNALK+YSSVRLD+RR  S++D     G   +
Sbjct: 257 KSQCTVVFLNQLRSKIGVIYGSPEVTSGGNALKYYSSVRLDVRRKESLRDNA---GITVK 313

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           VKV KNK+A PF+ VE DI++G GI     L+D    A    + G+W+S++G+ + QGR 
Sbjct: 314 VKVAKNKIAPPFRVVEMDILFGTGIDTVSCLLDAAEDAGFFTRKGSWYSYEGKNVSQGRL 373

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           N+   L+EN  + E ++  +R +    A    +    +T     +DD 
Sbjct: 374 NTVAHLKENQALRETLQDQVRAHLLEKAIKDREGGVADTPITDLEDDV 421


>gi|320335430|ref|YP_004172141.1| protein recA [Deinococcus maricopensis DSM 21211]
 gi|319756719|gb|ADV68476.1| Protein recA [Deinococcus maricopensis DSM 21211]
          Length = 348

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 188/322 (58%), Positives = 252/322 (78%), Gaps = 3/322 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK KA++ A+SQI++ +GKG+IM+LG++  +   ++ VS+GSL LD+ALG+GG PKGRI 
Sbjct: 4   DKMKAIQTAMSQIEKQFGKGSIMKLGAESKL--DVQAVSTGSLSLDLALGVGGIPKGRIT 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPES GKTTLAL  IAQSQK GGTCAF+DAEHALD +YAR LGV+   LL+SQPD G
Sbjct: 62  EIYGPESGGKTTLALSIIAQSQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNG 121

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI ++LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+ +
Sbjct: 122 EQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAVL 181

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS-IKDKDSITGNQ 249
           S++    +FINQ+R KIGVM+G+PETTTGG ALKFYSSVRLD+R++G   K  +    N 
Sbjct: 182 SKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYSSVRLDVRKIGQPTKVGNDAVANT 241

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
            +VK VKNK+A+PFK+VE  ++YG+G     +L+ L     I+ K+G+++S+  +R+GQG
Sbjct: 242 VKVKTVKNKVAAPFKEVELALVYGKGFDQLSDLVTLASDMDIIKKAGSFYSYGDERIGQG 301

Query: 310 RENSKIFLRENIEIAENIESLL 331
           +E +  ++ E  E+   I   +
Sbjct: 302 KEKAIAYIAERPEMEREIRERV 323


>gi|197941161|gb|ACH78294.1| RecA [Vibrio gallaecicus]
          Length = 277

 Score =  306 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 191/279 (68%), Positives = 236/279 (84%), Gaps = 2/279 (0%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           + +GKG+IM+LG   ++   +E +S+GSL LD+ALG GG P GRIVE+YGPESSGKTTL 
Sbjct: 1   KQFGKGSIMRLGDNRTM--DVETISTGSLSLDVALGAGGLPMGRIVEVYGPESSGKTTLT 58

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSG
Sbjct: 59  LELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSG 118

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+R
Sbjct: 119 AIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIR 178

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFK
Sbjct: 179 MKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFK 238

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
           Q E  I+YG+G +  GELIDLGVK  +VDK+GAW+S+ G
Sbjct: 239 QAETQILYGQGFNREGELIDLGVKNKLVDKAGAWYSYNG 277


>gi|304373008|ref|YP_003856217.1| recombinase A [Mycoplasma hyorhinis HUB-1]
 gi|304309199|gb|ADM21679.1| recombinase A [Mycoplasma hyorhinis HUB-1]
          Length = 343

 Score =  306 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 169/331 (51%), Positives = 238/331 (71%), Gaps = 2/331 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K  + +  +K L+ A  +I++ +GK AIM LG +       EV S+GSL +D ALGIGGF
Sbjct: 11  KWKDNMKDNKELKQAFLEIEKKFGKEAIMLLGEKPDT--DTEVFSTGSLAIDNALGIGGF 68

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EI+GPESSGKTT+ LH IA+ QK GG  AF+DAEH++D  YAR LG+D+ NL++
Sbjct: 69  PKGRIIEIFGPESSGKTTITLHAIAEVQKNGGVAAFIDAEHSIDPQYARNLGIDIDNLIL 128

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD+GEQAL+I D LV++GA+D+IV+DSVAAL P AE+ G+M + + G Q RLMS+ALR
Sbjct: 129 SQPDSGEQALDIVDTLVKTGAIDLIVVDSVAALVPLAELNGEMKDQVVGAQPRLMSKALR 188

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           K+T S++++   ++FINQ+R K+GV+FG+PETT GG ALKFYSS+RLD+R+   I     
Sbjct: 189 KITGSLNKNGTTIIFINQIREKVGVLFGNPETTPGGRALKFYSSIRLDVRKNQQISTGSD 248

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           I GN  ++KVVKNK+A PFK    +I++ +GIS F E+  L  +  IV K GAW+S+  Q
Sbjct: 249 IIGNMVKIKVVKNKLAIPFKTANVEIVFAQGISKFAEIAQLAEEYGIVSKKGAWYSYNDQ 308

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNA 335
            + QG+ N ++ L  N  + E + +L+++  
Sbjct: 309 NIAQGKTNFRLLLENNNSLYEELRALVKEKL 339


>gi|162424781|gb|ABX90068.1| RecA protein [Burkholderia mimosarum]
          Length = 279

 Score =  305 bits (782), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 203/280 (72%), Positives = 246/280 (87%), Gaps = 1/280 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRLGD-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+I
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I ++ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKKTNCMVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + G++TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGSETRVKVVKNKVSPPFREAVFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQG
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYSGERIGQG 279


>gi|157100335|emb|CAP03333.1| RecA protein [Vibrio aestuarianus]
          Length = 278

 Score =  305 bits (782), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 186/280 (66%), Positives = 236/280 (84%), Gaps = 2/280 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTL 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RS
Sbjct: 59  TLELIAAAQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GA+D+IV+DSVAALT +AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+
Sbjct: 119 GAIDVIVVDSVAALTXKAEIEGEMGDSXMGLQARMLSQAMRKLTGNLKQSNCMCIFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PF
Sbjct: 179 RMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
           KQ E  I+YG+G +  GEL+DLGVK  +V+K+GAW+S+ G
Sbjct: 239 KQAETQILYGQGFNREGELVDLGVKNKLVEKAGAWYSYNG 278


>gi|216263822|ref|ZP_03435816.1| protein RecA [Borrelia afzelii ACA-1]
 gi|215979866|gb|EEC20688.1| protein RecA [Borrelia afzelii ACA-1]
          Length = 365

 Score =  305 bits (782), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 176/329 (53%), Positives = 253/329 (76%), Gaps = 4/329 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           +    K KA+E A  QI++ +GKG+++++G    + +GI+ +SSGS+ LD ALGIGG+P+
Sbjct: 15  IERSSKEKAVELARVQIEKTFGKGSLIKMGE-SPVGKGIKSISSGSIVLDEALGIGGYPR 73

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+ LGV++  L +SQ
Sbjct: 74  GRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQ 133

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI + L+RSG +D+IV+DSVAALTP+ EI+G+MG+S  G+QARLMS+ALRK+
Sbjct: 134 PDTGEQALEIAEHLIRSGGIDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKI 193

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKD 243
           T  +S+S   ++FINQ+RM+IG+MFG+PETTTGGNALKFY+S+RL++R+V  +      D
Sbjct: 194 TGILSKSNTCIMFINQIRMRIGIMFGNPETTTGGNALKFYASLRLEVRKVEQVTRSGSSD 253

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+ RVK+VKNK+A PF++VE  I +G+GIS    ++D  +K ++V K+G+W+S   
Sbjct: 254 DVIGNKIRVKIVKNKVAPPFRKVELVIYFGKGISREAGILDAAIKHNLVQKTGSWYSLGD 313

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLR 332
            +LGQGRE+   +L + +E+  +++  LR
Sbjct: 314 NKLGQGRESVIEYLGKEVELTNDLDKRLR 342


>gi|297183093|gb|ADI19237.1| reca/rada recombinase [uncultured delta proteobacterium
           HF0200_14D13]
          Length = 322

 Score =  305 bits (781), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 183/324 (56%), Positives = 242/324 (74%), Gaps = 2/324 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M++G    +     VVS+G+LGLDIALGIGG+P+GRI+EIYGPESSGKTTLAL  IA+ Q
Sbjct: 1   MRMGE--GVVNLAPVVSAGNLGLDIALGIGGYPRGRIIEIYGPESSGKTTLALCAIAEVQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG  AF+DAEHALD + A  LGV++ +LL++QPD GEQALEI + +VR G  DI+V+D
Sbjct: 59  KAGGVAAFIDAEHALDPVNASILGVNMDDLLVAQPDYGEQALEIAEQMVRIGKSDIVVVD 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+ E+EGDMG+S  G+ ARLMSQALRKLT S+S+S  I VFINQ+R KIGV+FG
Sbjct: 119 SVAALVPKNELEGDMGDSHMGLHARLMSQALRKLTGSVSKSSTIFVFINQLRSKIGVVFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETTTGGNALKFYS++RLD+R+   IK  D + G++ +VKVVKNKMA PF+  EFD++Y
Sbjct: 179 NPETTTGGNALKFYSTIRLDVRKTTQIKQGDEVRGHRVKVKVVKNKMAPPFRVTEFDLIY 238

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           G+G+S  G L+D  V A I+ KSG WFS+  +RLGQGR+N   +L EN E A +++  LR
Sbjct: 239 GQGVSQMGILLDYAVNAEIIQKSGTWFSYGKERLGQGRDNCIKYLEENPEFAADLDQQLR 298

Query: 333 QNAGLVADSLLQEPAINTKDDADK 356
           +   L+ +   +    +   ++ +
Sbjct: 299 RLHKLIPEDTEKGTDASAATESAE 322


>gi|55669155|gb|AAV54516.1| RecA protein [Burkholderia tuberum STM678]
          Length = 279

 Score =  305 bits (781), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 202/280 (72%), Positives = 246/280 (87%), Gaps = 1/280 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G++M+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A
Sbjct: 1   GSVMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+I
Sbjct: 60  EMQKLGGTAAFIDAEHALDIQYAGKLGVNVADLLVSQPDTGEQALEIADALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           I+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+R+GQG
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYSGERIGQG 279


>gi|111114954|ref|YP_709572.1| recombinase A [Borrelia afzelii PKo]
 gi|122956423|sp|Q0SP32|RECA_BORAP RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|110890228|gb|ABH01396.1| recA protein [Borrelia afzelii PKo]
          Length = 365

 Score =  305 bits (780), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 175/330 (53%), Positives = 254/330 (76%), Gaps = 4/330 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           +    K +A+E A  QI++ +GKG+++++G    + +GI+ +SSGS+ LD ALGIGG+P+
Sbjct: 15  IERSSKEEAVELARVQIEKTFGKGSLIKMGE-SPVGKGIKSISSGSIVLDEALGIGGYPR 73

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+ LGV++  L +SQ
Sbjct: 74  GRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQ 133

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI + L+RSG +D+IV+DSVAALTP+ EI+G+MG+S  G+QARLMS+ALRK+
Sbjct: 134 PDTGEQALEIAEHLIRSGGIDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKI 193

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKD 243
           T  +S+S   ++FINQ+RM+IG+MFG+PETTTGGNALKFY+S+RL++R+V  I      D
Sbjct: 194 TGILSKSNTCIMFINQIRMRIGIMFGNPETTTGGNALKFYASLRLEVRKVEQITRSGSSD 253

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+ RVK+VKNK+A PF++VE  I +G+GIS    ++D  +K +++ K+G+W+S   
Sbjct: 254 DVIGNKIRVKIVKNKVAPPFRKVELVIYFGKGISREAGILDAAIKHNLIQKTGSWYSLGD 313

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQ 333
            +LGQGRE+   +L + +E+  +++  LR+
Sbjct: 314 NKLGQGRESVIEYLSKEVELTNDLDKRLRK 343


>gi|254304141|ref|ZP_04971499.1| recombination protein RecA [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148324333|gb|EDK89583.1| recombination protein RecA [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 379

 Score =  305 bits (780), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 196/377 (51%), Positives = 264/377 (70%), Gaps = 16/377 (4%)

Query: 1   MDYRKEMNIVD--------KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGS 52
           M  +K+ +I D        K KA++ A++ I + +G G IM+LG + S+   +E + +GS
Sbjct: 1   MAAKKDKSIPDSKITDKEGKEKAVKDAMAAITKGFGSGLIMKLGEKSSM--NVESIPTGS 58

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           + LDIALGIGG PKGRI+EIYG ESSGKTTLALH IA+ QK GGT AF+DAEHALD +YA
Sbjct: 59  INLDIALGIGGVPKGRIIEIYGAESSGKTTLALHIIAECQKQGGTVAFIDAEHALDPVYA 118

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           + LGVD+  LLISQPD GEQALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M +   
Sbjct: 119 KALGVDIDELLISQPDYGEQALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQM 178

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QARLMS+ LRKLT ++++ K  ++FINQ+R KIGV +G   TTTGG ALKFYSSVR++
Sbjct: 179 GLQARLMSKGLRKLTGNLNKYKTTMIFINQIREKIGVTYGPTTTTTGGKALKFYSSVRME 238

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           ++++G++K  D   G++  VKV KNK+A PFK+  F+I+YG+GIS  GE+ID  V   I+
Sbjct: 239 VKKMGTVKQGDDPIGSEVVVKVTKNKVAPPFKEAAFEILYGKGISKVGEIIDAAVAKDII 298

Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNA--GLVADSLLQEPAINT 350
            K+G+WFSF+ Q +GQG+E  +  L  N E+   +E+ L++    G V     +      
Sbjct: 299 VKAGSWFSFRDQSIGQGKEKVRAELETNPELLAQVEADLKEAIAKGPVDKKKKKSKKEVA 358

Query: 351 KDDADKD----DTDNVE 363
            DD D +    D D VE
Sbjct: 359 SDDTDDENLEIDDDAVE 375


>gi|157100337|emb|CAP03334.1| RecA protein [Vibrio aestuarianus]
          Length = 278

 Score =  305 bits (780), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 185/280 (66%), Positives = 234/280 (83%), Gaps = 2/280 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTL 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RS
Sbjct: 59  TLELIAAAQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GA+D+IV+DSVAALT +AEIEG+MG+S  G  AR++SQA+RKLT ++ +S C+ +FINQ+
Sbjct: 119 GAIDVIVVDSVAALTXKAEIEGEMGDSXMGXXARMLSQAMRKLTGNLKQSNCMCIFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PF
Sbjct: 179 RMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
           KQ E  I+YG+G +  GEL+DLGVK  +V+K+GAW+S+ G
Sbjct: 239 KQAETQILYGQGFNREGELVDLGVKNKLVEKAGAWYSYNG 278


>gi|148887233|emb|CAM12783.1| recombinase A [Ochrobactrum pseudogrignonense]
          Length = 267

 Score =  305 bits (780), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 216/264 (81%), Positives = 245/264 (92%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE V +GSL LDIALG+GG PKGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDA
Sbjct: 4   DIETVPTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDA 63

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEI
Sbjct: 64  EHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEI 123

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+SLPG+QARLMSQALRKLT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 124 EGEMGDSLPGLQARLMSQALRKLTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNAL 183

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+SVRLDIRR+GSIK++D + GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+
Sbjct: 184 KFYASVRLDIRRIGSIKERDEVVGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELV 243

Query: 284 DLGVKASIVDKSGAWFSFKGQRLG 307
           DLGVKA +V+KSGAWFS+  QRLG
Sbjct: 244 DLGVKAGVVEKSGAWFSYNSQRLG 267


>gi|225620037|ref|YP_002721294.1| recombinase A [Brachyspira hyodysenteriae WA1]
 gi|225214856|gb|ACN83590.1| recombinase A [Brachyspira hyodysenteriae WA1]
          Length = 435

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 178/380 (46%), Positives = 253/380 (66%), Gaps = 19/380 (5%)

Query: 1   MDYRK----EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLD 56
           M  +K    E+    KS+A+EA   QI + YG G+ M+LGS  ++   ++V+S+G+L LD
Sbjct: 9   MATKKKETAEVKKDGKSEAIEAITDQINKKYGPGSFMRLGSNKTV--NVDVISTGALTLD 66

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
            ALG+GG P+GRI+EIYG E+SGKTTL LH IA++QK GG  AF+DAEHALD +YA  LG
Sbjct: 67  HALGVGGVPRGRIIEIYGHEASGKTTLTLHIIAEAQKAGGYAAFIDAEHALDPVYASALG 126

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           VD+ NL ISQP++GE+ALEI + +V S A DI+V+DSVAAL  +AE+ GD+G++   +QA
Sbjct: 127 VDIDNLYISQPNSGEEALEILEKVVSSTAFDIVVVDSVAALVSKAELAGDIGDAHIALQA 186

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG---SPETTTGGNALKFYSSVRLDI 233
           RLMS ALRKLT+ IS +   ++FINQ+R  I          ETTTGG ALKFYSSVRLDI
Sbjct: 187 RLMSHALRKLTAIISNTNTAVIFINQLRQNIATTGYGAGPTETTTGGKALKFYSSVRLDI 246

Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVD 293
           RR   IK  D   G++ ++KVVKNK++SPFK V  +I++G+GIS  G LIDL ++A I+ 
Sbjct: 247 RRTEWIKKGDDTIGHKVKIKVVKNKLSSPFKVVNLEIIFGKGISSEGLLIDLAMEAKIIT 306

Query: 294 KSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           +SGAWF + G+++ QG+E  +  L  + ++   +E  +R+   +     ++E      ++
Sbjct: 307 RSGAWFYYNGEQIAQGKEKVRELLASDPKMRMELEIQIRETLNMGGADKVKEKLAEYLEE 366

Query: 354 ----------ADKDDTDNVE 363
                      + +D +N E
Sbjct: 367 QKNGGAKEAAKENNDDENNE 386


>gi|223945977|gb|ACN27072.1| unknown [Zea mays]
          Length = 433

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 176/353 (49%), Positives = 242/353 (68%), Gaps = 23/353 (6%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +    +  +VD+ K L+AA++ I   +GKG++ +LGS G  F  +E   SG L LD ALG
Sbjct: 55  LSGEDDPRLVDRQKVLDAAMNDINNSFGKGSVTRLGSAGGAF--VETFPSGCLTLDFALG 112

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG PKGR+VE+YGPESSGKTTLALH IA+ QK GG    VDAEHA D  Y++ LGVD++
Sbjct: 113 -GGLPKGRVVEVYGPESSGKTTLALHAIAEIQKLGGNAMLVDAEHAFDPAYSKALGVDIE 171

Query: 121 NLLISQPDTGEQALE------------------ITDMLVRSGAVDIIVIDSVAALTPRAE 162
           NL++ QPD GE ALE                  + D + RSGA+D+I IDSV+ALTPRAE
Sbjct: 172 NLIVCQPDNGEMALENGTEQLLTASAPQNSAILVADRMCRSGAIDLICIDSVSALTPRAE 231

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           IEG++G    G+QARLMSQALRK++ + S++ C L+F+NQ+R KIGV +G+PE T+GG A
Sbjct: 232 IEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLMFLNQIRYKIGVFYGNPEVTSGGIA 291

Query: 223 LKFYSSVRLDIRRVGSIK--DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           LKF++SVRL+IR +G IK    D   G + RV+V K+K++ P+KQ EF+I++GEG+S  G
Sbjct: 292 LKFFASVRLEIRLIGKIKSAKGDEDVGVKVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLG 351

Query: 281 ELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
            ++D      +V K G+W+S+K  RLGQGRE +  +LRE+    + IE ++R 
Sbjct: 352 CVLDCAELMDVVAKKGSWYSYKDIRLGQGREKALQYLRESPTTCDEIEKVVRA 404


>gi|195537265|dbj|BAG68221.1| recombinase A [Glaciibacter superstes]
 gi|195537267|dbj|BAG68222.1| recombinase A [Glaciibacter superstes]
          Length = 273

 Score =  304 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 187/275 (68%), Positives = 223/275 (81%), Gaps = 2/275 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           +M+LGS       +E +S+GS+ LD+ALG+GG P+GRIVEIYGPESSGKTTL LH IA +
Sbjct: 1   VMRLGSDDRA--PVETISTGSIALDVALGVGGLPRGRIVEIYGPESSGKTTLTLHAIANA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DMLVRSG++D+IVI
Sbjct: 59  QKNGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIADMLVRSGSIDLIVI 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  +S++   ++FINQ+R KIGV F
Sbjct: 119 DSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLSQTNTTMIFINQLREKIGVFF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           GSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA PFKQ EFDI+
Sbjct: 179 GSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKMAPPFKQAEFDII 238

Query: 272 YGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           YG GIS  G LID GV   IV KSGAW+++ G +L
Sbjct: 239 YGIGISREGSLIDFGVDHGIVKKSGAWYTYDGDQL 273


>gi|168703342|ref|ZP_02735619.1| recombinase A [Gemmata obscuriglobus UQM 2246]
          Length = 388

 Score =  304 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 177/323 (54%), Positives = 249/323 (77%), Gaps = 3/323 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           +K L+ AL+ I++ +GKG+IM LG    +   I+ +S+G+L LD+ALG  G P+GRIVEI
Sbjct: 21  NKELKTALAAIEKEFGKGSIMSLGDMNGL--DIDCISTGALSLDLALGGKGIPRGRIVEI 78

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YG E+SGKTT+ALHTIAQ+QK GG  AF+DAEHALD  +A++LGVDL NLL+SQP  GE+
Sbjct: 79  YGAEASGKTTIALHTIAQAQKAGGVAAFIDAEHALDPSWAKRLGVDLDNLLVSQPGYGEE 138

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG-DMGESLPGMQARLMSQALRKLTSSIS 191
           AL I +MLV+S AVD+IV+DSVAAL P+ EI+  ++G++  G+QARLMSQA+R LT  I+
Sbjct: 139 ALRIAEMLVKSNAVDLIVVDSVAALVPKNEIQDSEIGDTKVGLQARLMSQAMRILTPQIN 198

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S+  L+FINQ+R KIGVM+G P TTTGG ALKFY+SVR++++RV  +KD +   G +TR
Sbjct: 199 KSRTCLMFINQIRQKIGVMYGDPNTTTGGLALKFYASVRMEVKRVTHVKDGEDTIGAETR 258

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           V+VVKNK+A PF+  EF++++  GI F G++I L ++  +++KSGA FS+K QRLGQG +
Sbjct: 259 VRVVKNKIAPPFRNAEFELLHDRGIDFEGDVIKLALEDEVIEKSGAHFSYKEQRLGQGLK 318

Query: 312 NSKIFLRENIEIAENIESLLRQN 334
           N+  FLREN  + + I + +++ 
Sbjct: 319 NAVEFLRENHAVRDEIVAAVKEK 341


>gi|312147754|gb|ADQ30413.1| protein RecA [Borrelia burgdorferi JD1]
          Length = 365

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 180/352 (51%), Positives = 261/352 (74%), Gaps = 4/352 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           +    K +A+E A  QI++ +GKG+++++G    + +GI+ +SSGS+ LD ALGIGG+P+
Sbjct: 15  IERASKEEAIELARVQIEKAFGKGSLIKMGE-SPVGQGIKSMSSGSIVLDEALGIGGYPR 73

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+ LGV++  L +SQ
Sbjct: 74  GRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQ 133

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI + L+RSG VD+IV+DSVAALTP+ EI+G+MG+S  G+QARLMS+ALRK+
Sbjct: 134 PDTGEQALEIAEHLIRSGGVDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKI 193

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKD 243
           T  +S+S   ++FINQ+RM+IGVMFG+PETTTGGNALKFYSS+RL++R++  +      D
Sbjct: 194 TGILSKSNTCIMFINQIRMRIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTRSGSSD 253

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+ RVK+VKNK+A PF++VE  I +G+GIS    ++D  +K +++ K+G+W+S   
Sbjct: 254 DVIGNKIRVKIVKNKVAPPFRKVELIIYFGKGISREAGILDAAIKHNLIQKTGSWYSLGD 313

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            +LGQGRE+   +L + +E+A N++  LR+      D          +D+++
Sbjct: 314 NKLGQGRESVIEYLSKEVELANNLDKKLRKIIFNNFDQENDNFIEFKEDESE 365


>gi|222871902|gb|EEF09033.1| predicted protein [Populus trichocarpa]
          Length = 281

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 197/281 (70%), Positives = 245/281 (87%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LDIALG+GG P+GR++EIYGPESSGKTTL L  IA+ QK GGTCAF+DAEHALD+ YA+K
Sbjct: 1   LDIALGVGGLPRGRVIEIYGPESSGKTTLTLQVIAEMQKQGGTCAFIDAEHALDTSYAQK 60

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           LGV+L  +LISQPDTGEQALEI D LVRSGAVD+IV+DSVAALTPRAEIEG+MG+ LPG+
Sbjct: 61  LGVNLNEVLISQPDTGEQALEIVDSLVRSGAVDMIVVDSVAALTPRAEIEGEMGDQLPGL 120

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
           QARLMSQALRKLT++I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIR
Sbjct: 121 QARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIR 180

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK 294
           R G+IK  D   GN+T+VKVVKNK++ PFK  EFDI++GEGIS  GE++D+GV A I+DK
Sbjct: 181 RTGTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEILDMGVNAKILDK 240

Query: 295 SGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
           SGAW+++ G+++GQGR+N++ FLREN  +A  IE+ +R + 
Sbjct: 241 SGAWYAYNGEKIGQGRDNAREFLRENSGLAVEIENKVRDSL 281


>gi|307602801|gb|ADN67613.1| RecA [Neptuniibacter sp. antisso-13]
          Length = 272

 Score =  304 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 204/274 (74%), Positives = 236/274 (86%), Gaps = 2/274 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKGA+M++G Q    E I  VS+GSLGLDIALGIGG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGAVMRMGDQPR--EAIPSVSTGSLGLDIALGIGGLPYGRIVEIYGPESSGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           +A++QK G TCAFVDAEHALD IYA KLGVD+ NLL+SQPDTGEQALEITDMLVRS AVD
Sbjct: 59  VAEAQKQGKTCAFVDAEHALDPIYAEKLGVDVDNLLVSQPDTGEQALEITDMLVRSNAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT ++  S C+LVFINQ+RMKI
Sbjct: 119 VIIVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTGNVKSSNCLLVFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFYSSVRLDIRR G++K  D + GN+TRVKVVKNK++ PF+Q E
Sbjct: 179 GVMFGNPETTTGGNALKFYSSVRLDIRRTGAVKQGDEVVGNETRVKVVKNKVSPPFRQAE 238

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
           F IMYG+GI   GE+IDLGVK  +VDKSGAW+S+
Sbjct: 239 FQIMYGKGIYHMGEVIDLGVKEGLVDKSGAWYSY 272


>gi|302847104|ref|XP_002955087.1| hypothetical protein VOLCADRAFT_121385 [Volvox carteri f.
           nagariensis]
 gi|300259615|gb|EFJ43841.1| hypothetical protein VOLCADRAFT_121385 [Volvox carteri f.
           nagariensis]
          Length = 576

 Score =  304 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 169/345 (48%), Positives = 231/345 (66%), Gaps = 3/345 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K+K     + +I R +G+  IM+L    S+   ++   SGSL LD ALG GG+P+GRI+E
Sbjct: 226 KAKLFNDTVDRIARRFGENTIMRLSE--SVSANVDTFPSGSLTLDAALG-GGYPRGRIIE 282

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPE+SGKTTLA+H  A+ Q+ GGT A++D EHA D  YA +LG++L++   SQP TGE
Sbjct: 283 VYGPEASGKTTLAMHACAEIQRLGGTVAYIDVEHAFDRTYAERLGINLESFWYSQPMTGE 342

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           +ALE+ D L RS   D++VIDSVAAL PRAE+EGD+G    G QARL+SQALRKL++S +
Sbjct: 343 EALEVMDELCRSNVCDLVVIDSVAALVPRAELEGDIGNVQIGSQARLLSQALRKLSASAA 402

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +SK  L FINQ+R KIGVMFG+PETT GG ALK+YSSVR+DIR+  ++   +   GN+ R
Sbjct: 403 KSKTTLFFINQLRNKIGVMFGNPETTAGGQALKYYSSVRIDIRKKETLTQGEQAYGNRVR 462

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
            KVVKNK+A P K+   +I YG GI F G L+D   +  ++++ GAW+     RLGQGRE
Sbjct: 463 AKVVKNKVAPPHKEAMLEIYYGRGIDFLGGLVDTAERLRVLNRKGAWYYMGEMRLGQGRE 522

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
                LRE+ +    IE+ +R+      D+ L +      D  D+
Sbjct: 523 KMLQLLREDPDRCAAIENAVREILKANPDAALVDVEAGDDDGPDQ 567


>gi|195942363|ref|ZP_03087745.1| recombinase A [Borrelia burgdorferi 80a]
          Length = 365

 Score =  304 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 180/352 (51%), Positives = 260/352 (73%), Gaps = 4/352 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           +    K +A+E A  QI++ +GKG+++++G    + +GI+ +SSGS+ LD ALGIGG+P+
Sbjct: 15  IERASKEEAIELARVQIEKAFGKGSLIKMGE-SPVGQGIKSMSSGSIVLDEALGIGGYPR 73

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+ LGV++  L +SQ
Sbjct: 74  GRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQ 133

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI + L+RSG VD+IV+DSVAALTP+ EI+G+MG+S  G+QARLMS+ALRK+
Sbjct: 134 PDTGEQALEIAEHLIRSGGVDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKI 193

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKD 243
           T  +S+S   ++FINQ+RM+IGVMFG+PETTTGGNALKFYSS+RL++R++  +      D
Sbjct: 194 TGILSKSNTCIMFINQIRMRIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTRSGSSD 253

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+ RVK+VKNK+A PF++VE  I +G+GIS    ++D  +K +++ K+G+W+S   
Sbjct: 254 DVIGNKIRVKIVKNKVAPPFRKVELIIYFGKGISREAGILDAAIKHNLIQKTGSWYSLGD 313

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            +LGQGRE    +L + +E+A N++  LR+      D          +D+++
Sbjct: 314 NKLGQGREGVIEYLSKEVELANNLDKKLRKIIFNNFDQENDNFIEFKEDESE 365


>gi|302567265|gb|ADL41328.1| recombinase A [Propionibacterium acnes]
 gi|302567267|gb|ADL41329.1| recombinase A [Propionibacterium acnes]
 gi|302567269|gb|ADL41330.1| recombinase A [Propionibacterium acnes]
          Length = 269

 Score =  304 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 181/268 (67%), Positives = 224/268 (83%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            + +GS+ LD+ALG+GG P+GRIVEIYGPESSGKTT+ALH IA +Q  GG CAF+DAEHA
Sbjct: 2   AIPTGSVALDVALGVGGLPRGRIVEIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHA 61

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YARKLGVD  +LL+SQPD GEQALEI D LVRSGA++++V+DSVAALTP+AEIEG+
Sbjct: 62  LDPEYARKLGVDTDSLLVSQPDNGEQALEIADTLVRSGALELVVVDSVAALTPKAEIEGE 121

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+S  G+QARLMSQALRK+T +++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY
Sbjct: 122 MGDSHVGLQARLMSQALRKMTGALNAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFY 181

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
           SSVRLD+RRV ++KD   + GN+TRVKV KNK+A PFKQ EFDI+YG+GIS  G LID+G
Sbjct: 182 SSVRLDVRRVETLKDGSEMVGNRTRVKVAKNKVAPPFKQAEFDILYGQGISREGSLIDMG 241

Query: 287 VKASIVDKSGAWFSFKGQRLGQGRENSK 314
           V   I+ KSG+WFS+  ++LGQG+EN +
Sbjct: 242 VDCGIITKSGSWFSYNNEQLGQGKENVR 269


>gi|237739861|ref|ZP_04570342.1| RecA protein [Fusobacterium sp. 2_1_31]
 gi|229423469|gb|EEO38516.1| RecA protein [Fusobacterium sp. 2_1_31]
          Length = 379

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 187/342 (54%), Positives = 253/342 (73%), Gaps = 10/342 (2%)

Query: 1   MDYRKEMNIVD--------KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGS 52
           M  +K+ N  D        K KA+  A++ I + +G G IM+LG + S+   +E + +GS
Sbjct: 1   MAAKKDKNTPDSKITDKEGKQKAVNDAMAAITKGFGAGLIMKLGEKSSM--NVESIPTGS 58

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           + LDIALGIGG PKGRI+E+YG ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA
Sbjct: 59  INLDIALGIGGVPKGRIIEVYGAESSGKTTLALHIIAEAQKQGGTVAFIDAEHALDPVYA 118

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           + LGVD+  LLISQPD GEQALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M +   
Sbjct: 119 KALGVDIDELLISQPDYGEQALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQM 178

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QARLMS+ LRKLT ++++ K  ++FINQ+R KIGV +G   TTTGG ALKFY+SVRL+
Sbjct: 179 GLQARLMSKGLRKLTGNLNKYKTTMIFINQIREKIGVTYGPTTTTTGGKALKFYASVRLE 238

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           ++++G++K  D   G++  VKV KNK+A PFK+  F+I+YG+GIS  GE+ID  V   I+
Sbjct: 239 VKKMGTVKQGDDPIGSEVVVKVTKNKVAPPFKEAAFEILYGKGISRVGEIIDAAVARDII 298

Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
            K+G+WFSF+ Q +GQG+E  +I L  N E+   +E+ L++ 
Sbjct: 299 VKAGSWFSFRDQSIGQGKEKVRIELESNPELLAQVEADLKEA 340


>gi|211907502|gb|ACJ12280.1| RecA [Vibrio sp. cn83]
          Length = 278

 Score =  303 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 188/280 (67%), Positives = 237/280 (84%), Gaps = 2/280 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGP
Sbjct: 1   LAAALGQIEKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA +QK G TCAF+DAEHALD +YA++LGVD+  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLECIAAAQKAGKTCAFIDAEHALDPVYAKRLGVDIDALLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 ICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           KNK+A+PFKQ E  I+YG+G + +GELIDLGVK  +V+K+
Sbjct: 239 KNKIAAPFKQAETQILYGQGFNRYGELIDLGVKNKLVEKA 278


>gi|15594476|ref|NP_212265.1| recombinase A [Borrelia burgdorferi B31]
 gi|218249168|ref|YP_002374659.1| protein RecA [Borrelia burgdorferi ZS7]
 gi|223889088|ref|ZP_03623677.1| protein RecA [Borrelia burgdorferi 64b]
 gi|225549262|ref|ZP_03770235.1| protein RecA [Borrelia burgdorferi 94a]
 gi|226321958|ref|ZP_03797483.1| protein RecA [Borrelia burgdorferi Bol26]
 gi|2500084|sp|Q59180|RECA_BORBU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|226737752|sp|B7J164|RECA_BORBZ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|1276443|gb|AAA97557.1| RecA [Borrelia burgdorferi]
 gi|2688005|gb|AAC66507.1| recA protein (recA) [Borrelia burgdorferi B31]
 gi|218164356|gb|ACK74417.1| protein RecA [Borrelia burgdorferi ZS7]
 gi|223885337|gb|EEF56438.1| protein RecA [Borrelia burgdorferi 64b]
 gi|225370120|gb|EEG99560.1| protein RecA [Borrelia burgdorferi 94a]
 gi|226232548|gb|EEH31302.1| protein RecA [Borrelia burgdorferi Bol26]
 gi|1586537|prf||2204236A recA gene
          Length = 365

 Score =  303 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 180/352 (51%), Positives = 261/352 (74%), Gaps = 4/352 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           +    K +A+E A  QI++ +GKG+++++G    + +GI+ +SSGS+ LD ALGIGG+P+
Sbjct: 15  IERASKEEAIELARVQIEKAFGKGSLIKMGE-SPVGQGIKSMSSGSIVLDEALGIGGYPR 73

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+ LGV++  L +SQ
Sbjct: 74  GRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQ 133

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI + L+RSG VD+IV+DSVAALTP+ EI+G+MG+S  G+QARLMS+ALRK+
Sbjct: 134 PDTGEQALEIAEHLIRSGGVDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKI 193

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKD 243
           T  +S+S   ++FINQ+RM+IGVMFG+PETTTGGNALKFYSS+RL++R++  +      D
Sbjct: 194 TGILSKSNTCIMFINQIRMRIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTRSGSSD 253

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+ RVK+VKNK+A PF++VE  I +G+GIS    ++D  +K +++ K+G+W+S   
Sbjct: 254 DVIGNKIRVKIVKNKVAPPFRKVELIIYFGKGISREAGILDAAIKHNLIQKTGSWYSLGD 313

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            +LGQGRE+   +L + +E+A N++  LR+      D          +D+++
Sbjct: 314 NKLGQGRESVIEYLSKEVELANNLDKRLRKIIFNNFDQENDNFIEFKEDESE 365


>gi|302567255|gb|ADL41323.1| recombinase A [Propionibacterium acnes]
 gi|302567257|gb|ADL41324.1| recombinase A [Propionibacterium acnes]
 gi|302567259|gb|ADL41325.1| recombinase A [Propionibacterium acnes]
 gi|302567261|gb|ADL41326.1| recombinase A [Propionibacterium acnes]
 gi|302567263|gb|ADL41327.1| recombinase A [Propionibacterium acnes]
          Length = 269

 Score =  303 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 182/268 (67%), Positives = 224/268 (83%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            + +GS+ LD+ALG+GG P+GRIVEIYGPESSGKTT+ALH IA +Q  GG CAF+DAEHA
Sbjct: 2   AIPTGSVALDVALGVGGLPRGRIVEIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHA 61

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YARKLGVD  +LL+SQPD GEQALEI D LVRSGA+++IV+DSVAALTP+AEIEG+
Sbjct: 62  LDPEYARKLGVDTDSLLVSQPDNGEQALEIADTLVRSGALELIVVDSVAALTPKAEIEGE 121

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+S  G+QARLMSQALRK+T +++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY
Sbjct: 122 MGDSHVGLQARLMSQALRKMTGALNAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFY 181

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
           SSVRLD+RRV ++KD   + GN+TRVKV KNK+A PFKQ EFDI+YG+GIS  G LID+G
Sbjct: 182 SSVRLDVRRVETLKDGSEMVGNRTRVKVAKNKVAPPFKQAEFDILYGQGISREGSLIDMG 241

Query: 287 VKASIVDKSGAWFSFKGQRLGQGRENSK 314
           V   I+ KSG+WFS+  ++LGQG+EN +
Sbjct: 242 VDCGIITKSGSWFSYNNEQLGQGKENVR 269


>gi|159894948|gb|ABX09820.1| recombinase A [Vibrio orientalis]
          Length = 278

 Score =  303 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 189/280 (67%), Positives = 236/280 (84%), Gaps = 2/280 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGP
Sbjct: 1   LAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGA+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 ICDALARSGAIDVMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           KNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +++K+
Sbjct: 239 KNKIAAPFKQAETQILYGQGFNREGELIDLGVKHKLIEKA 278


>gi|330723382|gb|AEC45752.1| recombinase A [Mycoplasma hyorhinis MCLD]
          Length = 328

 Score =  303 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 167/323 (51%), Positives = 234/323 (72%), Gaps = 2/323 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           +K L+ A  +I++ +GK AIM LG +       EV S+GS  +D ALGIGGFPKGRI+EI
Sbjct: 4   NKELKQAFLEIEKKFGKEAIMLLGEKPDT--DTEVFSTGSFAIDNALGIGGFPKGRIIEI 61

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           +GPESSGKTT+ LH IA+ QK GG  AF+DAEH++D  YAR LG+D+ NL++SQPD+GEQ
Sbjct: 62  FGPESSGKTTITLHAIAEVQKNGGVAAFIDAEHSIDPQYARNLGIDIDNLILSQPDSGEQ 121

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           AL+I D LV++GA+D+IV+DSVAAL P AE+ G+M + + G Q RLMS+ALRK+T S+++
Sbjct: 122 ALDIVDTLVKTGAIDLIVVDSVAALVPLAELNGEMKDQVVGAQPRLMSKALRKITGSLNK 181

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           +   ++FINQ+R K+GV+FG+PETT GG ALKFYSS+RLD+R+   I     I GN  ++
Sbjct: 182 NGTTIIFINQIREKVGVLFGNPETTPGGRALKFYSSIRLDVRKNQQISTGSDIIGNMVKI 241

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK+A PFK    +I++ +GIS F E+  L  +  IV K GAW+S+  Q + QG+ N
Sbjct: 242 KVVKNKLAIPFKTANVEIVFAQGISKFAEIAQLAEEYGIVSKKGAWYSYNDQNIAQGKTN 301

Query: 313 SKIFLRENIEIAENIESLLRQNA 335
            ++ L  N  + E + +L+++  
Sbjct: 302 FRLLLENNNSLYEELRALVKEKL 324


>gi|216264676|ref|ZP_03436668.1| protein RecA [Borrelia burgdorferi 156a]
 gi|221217406|ref|ZP_03588877.1| protein RecA [Borrelia burgdorferi 72a]
 gi|224533980|ref|ZP_03674564.1| protein RecA [Borrelia burgdorferi CA-11.2a]
 gi|215981149|gb|EEC21956.1| protein RecA [Borrelia burgdorferi 156a]
 gi|221192684|gb|EEE18900.1| protein RecA [Borrelia burgdorferi 72a]
 gi|224512816|gb|EEF83183.1| protein RecA [Borrelia burgdorferi CA-11.2a]
          Length = 365

 Score =  303 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 179/352 (50%), Positives = 261/352 (74%), Gaps = 4/352 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           +    K +A+E A  QI++ +GKG+++++G    + +GI+ +SSGS+ LD ALGIGG+P+
Sbjct: 15  IERASKEEAIELARVQIEKAFGKGSLIKMGE-SPVGQGIKSMSSGSIVLDEALGIGGYPR 73

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+ LGV++  L +SQ
Sbjct: 74  GRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQ 133

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI + L+RSG VD+IV+DSVAALTP+ EI+G+MG+S  G+QARLMS+ALRK+
Sbjct: 134 PDTGEQALEIAEHLIRSGGVDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKI 193

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKD 243
           T  +S+S   ++FINQ+R++IGVMFG+PETTTGGNALKFYSS+RL++R++  +      D
Sbjct: 194 TGILSKSNTCIMFINQIRIRIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTRSGSSD 253

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+ RVK+VKNK+A PF++VE  I +G+GIS    ++D  +K +++ K+G+W+S   
Sbjct: 254 DVIGNKIRVKIVKNKVAPPFRKVELIIYFGKGISREAGILDAAIKHNLIQKTGSWYSLGD 313

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            +LGQGRE+   +L + +E+A N++  LR+      D          +D+++
Sbjct: 314 NKLGQGRESVIEYLSKEVELANNLDKRLRKIIFNNFDQENDNFIEFKEDESE 365


>gi|225549852|ref|ZP_03770814.1| protein RecA [Borrelia burgdorferi 118a]
 gi|225369543|gb|EEG98994.1| protein RecA [Borrelia burgdorferi 118a]
          Length = 365

 Score =  303 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 179/352 (50%), Positives = 261/352 (74%), Gaps = 4/352 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           +    K +A+E A  QI++ +GKG+++++G    + +GI+ +SSGS+ LD ALGIGG+P+
Sbjct: 15  IERASKEEAIELARVQIEKAFGKGSLIKMGE-SPVGQGIKSMSSGSIVLDEALGIGGYPR 73

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+ LGV++  L +SQ
Sbjct: 74  GRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQ 133

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI + L+RSG VD+IV+DSVAALTP+ EI+G+MG+S  G+QARLMS+ALRK+
Sbjct: 134 PDTGEQALEIAEHLIRSGGVDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKI 193

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKD 243
           T  +S+S   ++FINQ+R++IGVMFG+PETTTGGNALKFYSS+RL++R++  +      D
Sbjct: 194 TGILSKSNTCIMFINQIRIRIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTRSGSSD 253

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+ RVK+VKNK+A PF++VE  I +G+GIS    ++D  +K +++ K+G+W+S   
Sbjct: 254 DVIGNKIRVKIVKNKVAPPFRKVELIIYFGKGISREAGILDAAIKHNLIQKTGSWYSLGD 313

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            +LGQGRE+   +L + +E+A N++  LR+      D          +D+++
Sbjct: 314 NKLGQGRESVIEYLSKEVELANNLDKRLRKIIFNNFDQENDNFIKFKEDESE 365


>gi|45825424|gb|AAS77561.1| RecA protein [Bradyrhizobium sp. ICMP 14755]
          Length = 277

 Score =  303 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 206/278 (74%), Positives = 248/278 (89%), Gaps = 1/278 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           + +DKSKAL AALSQI+R +GKG++M+LG        +E VSSGSLGLDIALGIGG PKG
Sbjct: 1   SSMDKSKALAAALSQIERQFGKGSVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKG 59

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQP
Sbjct: 60  RVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQP 119

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT
Sbjct: 120 DTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLT 179

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           +SI++S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D + G
Sbjct: 180 ASINKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEVVG 239

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           N TRVKVVKNK+A PFKQVEFDIMYGEG+S  GE++DL
Sbjct: 240 NTTRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDL 277


>gi|157100331|emb|CAP03331.1| RecA protein [Vibrio aestuarianus]
          Length = 278

 Score =  303 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 187/280 (66%), Positives = 237/280 (84%), Gaps = 2/280 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTL 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA +Q+ G TCAF+DAEHALDSIYA+KLGVD+  LL+SQPDTGEQALEI D L RS
Sbjct: 59  TLELIAAAQRVGKTCAFIDAEHALDSIYAKKLGVDIDALLVSQPDTGEQALEICDALARS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GA+D+IV+DSVAALT +AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+
Sbjct: 119 GAIDVIVVDSVAALTXKAEIEGEMGDSXMGLQARMLSQAMRKLTGNLKQSNCMCIFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PF
Sbjct: 179 RMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
           KQ E  I+YG+G +  GEL+DLGVK  +V+K+GAW+S+ G
Sbjct: 239 KQAETQILYGQGFNREGELVDLGVKNKLVEKAGAWYSYNG 278


>gi|2500091|sp|Q59629|RECA_NEIPH RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|1354927|gb|AAB49199.1| RecA [Neisseria pharyngis subsp. flava]
          Length = 274

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 189/275 (68%), Positives = 232/275 (84%), Gaps = 1/275 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM++       E ++V+S+GSLG+D+ALG+GG P+GR+VEI+GPESSGKTTL L  IAQ
Sbjct: 1   SIMKM-DGSQQEENLDVISTGSLGVDLALGVGGLPRGRVVEIFGPESSGKTTLCLEAIAQ 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QKTGG CAF+DAEHA D +YARKLGV ++ L +SQPDTGEQALEI D LVRSG VD++V
Sbjct: 60  CQKTGGICAFIDAEHAFDPVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGVDMVV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  I R+  ++VFINQ+RMKIGVM
Sbjct: 120 VDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGHIKRTNTLVVFINQIRMKIGVM 179

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FGSPETTTGGNALKFY+SVRLDIRR G IK  D + GN+T+VKV+KNK+A PF+Q EFDI
Sbjct: 180 FGSPETTTGGNALKFYASVRLDIRRTGQIKKGDDVIGNETKVKVIKNKVAPPFRQAEFDI 239

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           +YGEG+S+ GELIDLGVK  IV+KSGAW+S+ G +
Sbjct: 240 LYGEGVSWEGELIDLGVKYDIVEKSGAWYSYNGSK 274


>gi|141813|gb|AAB59011.1| recA [Acholeplasma laidlawii]
          Length = 295

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 176/297 (59%), Positives = 230/297 (77%), Gaps = 2/297 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+   K +ALE AL QI++ +GKG+IM+LG        IE + SGS+ LDIALGIGG+P+
Sbjct: 1   MSDNKKQQALELALKQIEKQFGKGSIMKLGDGAD--HSIEAIPSGSIALDIALGIGGYPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E+YGPESSGKTTL LH +A +QK GGT AF+DAEHALD  YA+ LGVDL NL++SQ
Sbjct: 59  GRIIEVYGPESSGKTTLTLHAMASAQKQGGTVAFIDAEHALDPNYAKALGVDLDNLVLSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQAL+I + L++SG++D+IVIDSVAAL P AEI GDM  +  G+QAR+MSQA+RK+
Sbjct: 119 PDTGEQALDIAEALIKSGSIDMIVIDSVAALVPEAEIAGDMSANHVGLQARMMSQAMRKM 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           +  IS+S  + +FINQ+R K+GVMFG+PETT GG ALKF+SSVRL+IRR  +IK    + 
Sbjct: 179 SGVISKSNVVAIFINQIREKVGVMFGNPETTPGGRALKFFSSVRLEIRRAEAIKQGSEMI 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
           G ++ VKVVK+K+A P K    DIMYG GIS  GE++DL V+ ++V+KSGAW++   
Sbjct: 239 GIKSNVKVVKSKVAPPLKTASIDIMYGTGISRSGEVLDLSVELNLVNKSGAWYNIGE 295


>gi|156067097|gb|ABR12767.2| recombinase A [Photobacterium angustum]
          Length = 278

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 192/280 (68%), Positives = 237/280 (84%), Gaps = 2/280 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGP
Sbjct: 1   LAAALGQIEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L TIA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLETIAAAQRKGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 ICDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           KNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +V+K+
Sbjct: 239 KNKIAAPFKQAETQILYGQGFNRNGELIDLGVKHKLVEKA 278


>gi|226320677|ref|ZP_03796235.1| protein RecA [Borrelia burgdorferi 29805]
 gi|226233893|gb|EEH32616.1| protein RecA [Borrelia burgdorferi 29805]
          Length = 365

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 179/352 (50%), Positives = 261/352 (74%), Gaps = 4/352 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           +    K +A+E A  QI++ +GKG+++++G    + +GI+ +SSGS+ LD ALGIGG+P+
Sbjct: 15  IERASKEEAIELARVQIEKAFGKGSLIKMGE-SPVGQGIKSMSSGSIILDEALGIGGYPR 73

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+ LGV++  L +SQ
Sbjct: 74  GRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQ 133

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI + L+RSG VD+IV+DSVAALTP+ EI+G+MG+S  G+QARLMS+ALRK+
Sbjct: 134 PDTGEQALEIAEHLIRSGGVDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKI 193

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKD 243
           T  +S+S   ++FINQ+R++IGVMFG+PETTTGGNALKFYSS+RL++R++  +      D
Sbjct: 194 TGILSKSNTCIMFINQIRIRIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTRSGSSD 253

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+ RVK+VKNK+A PF++VE  I +G+GIS    ++D  +K +++ K+G+W+S   
Sbjct: 254 DVIGNKIRVKIVKNKVAPPFRKVELIIYFGKGISREAGILDAAIKHNLIQKTGSWYSLGD 313

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
            +LGQGRE+   +L + +E+A N++  LR+      D          +D+++
Sbjct: 314 NKLGQGRESVIEYLSKEVELANNLDKRLRKIIFNNFDQENDNFIEFKEDESE 365


>gi|2500088|sp|Q59595|RECA_NEICI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|1354911|gb|AAB49191.1| RecA [Neisseria cinerea]
          Length = 274

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 188/275 (68%), Positives = 230/275 (83%), Gaps = 1/275 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM++       E +EV+S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKTTL L  +AQ
Sbjct: 1   SIMKM-DGSQQEENLEVISTGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVAQ 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GG CAF+DAEHA D +YARKLGV ++ L +SQPDTGEQALEI D LVRSG VD++V
Sbjct: 60  CQKDGGVCAFIDAEHAFDPVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGVDMVV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAAL P+AEIEGDMG+S  G+ ARLMSQALRKLT  I ++  ++VFINQ+RMKIGVM
Sbjct: 120 VDSVAALVPKAEIEGDMGDSHVGLHARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVM 179

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FGSPETTTGGNALKFYSSVRLDIRR G IK  + + GN+TRVKV+KNK+A PF+Q EFDI
Sbjct: 180 FGSPETTTGGNALKFYSSVRLDIRRTGQIKKGEEVIGNETRVKVIKNKVAPPFRQAEFDI 239

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           +YGEG+S+ GELID+GVK  I++KSGAW+S+ G +
Sbjct: 240 LYGEGVSWEGELIDIGVKNDIINKSGAWYSYNGAK 274


>gi|45825420|gb|AAS77559.1| RecA protein [Bradyrhizobium sp. ICMP 12835]
          Length = 277

 Score =  302 bits (773), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 207/278 (74%), Positives = 248/278 (89%), Gaps = 1/278 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           + +DKSKAL AALSQI+R +GKG++M+LG        +E VSSGSLGLDIALGIGG PKG
Sbjct: 1   SSMDKSKALAAALSQIERQFGKGSVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKG 59

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQP
Sbjct: 60  RVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQP 119

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT
Sbjct: 120 DTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLT 179

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           +SI++S  +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D + G
Sbjct: 180 ASINKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEVVG 239

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           N TRVKVVKNK+A PFKQVEFDIMYGEG+S  GE++DL
Sbjct: 240 NTTRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDL 277


>gi|162769933|emb|CAP58282.1| DNA recombinase [Burkholderia latens]
          Length = 286

 Score =  302 bits (773), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 199/286 (69%), Positives = 246/286 (86%), Gaps = 2/286 (0%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLI
Sbjct: 1   PRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLI 60

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 61  SQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 120

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D 
Sbjct: 121 KLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDE 180

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+
Sbjct: 181 VIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGE 240

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA--DSLLQEPAI 348
           ++GQG++N++ FLREN EIA  IE+ +R++ G+VA  D ++ E   
Sbjct: 241 KIGQGKDNAREFLRENPEIAREIENRIRESLGVVAMPDGVVDEAEA 286


>gi|188996308|ref|YP_001930559.1| recA protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931375|gb|ACD66005.1| recA protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 339

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 184/333 (55%), Positives = 256/333 (76%), Gaps = 8/333 (2%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N+  K KALE+A+ QI++ YGKG++M L S+G   + +EV+ +GSL LDIA GIGG P
Sbjct: 4   EENLEAKKKALESAILQIEKRYGKGSLMTLSSEG--IKSVEVIPTGSLSLDIATGIGGVP 61

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR++EIYGPESSGKTTL LH IA++QK GG   F+DAEHA D  YA+ +GV+L  L+IS
Sbjct: 62  KGRVIEIYGPESSGKTTLTLHIIAEAQKKGGRAVFIDAEHAFDPKYAKAIGVNLDELIIS 121

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQA+EI + LVRS AVD+IVIDSVAAL P+AEIEGD+ +S  G+ ARLMS+A+R 
Sbjct: 122 QPDYGEQAIEIAETLVRSNAVDVIVIDSVAALVPKAEIEGDIEDSNVGLHARLMSKAMRV 181

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           L  ++++S   L+ INQ+R K+GVMFG+PETTTGG A+KF++ +R+++R+   IK     
Sbjct: 182 LKGAVNKSNTALILINQIREKVGVMFGNPETTTGGRAIKFFADMRMEVRKSD-IKTDGEK 240

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ- 304
            G++ +VKVVKNK+A PFK+ EFD++YGEGIS  GE++DLG +  I+ KSGAW+S+K + 
Sbjct: 241 VGSRVKVKVVKNKLAPPFKEAEFDVIYGEGISKEGEILDLGEELGIIKKSGAWYSYKDEN 300

Query: 305 ----RLGQGRENSKIFLRENIEIAENIESLLRQ 333
               +LGQG+E ++ FL++N E+ E +E ++++
Sbjct: 301 GEEIKLGQGKEKAREFLKQNKELTEKLEQIIKE 333


>gi|195942371|ref|ZP_03087753.1| recombinase A [Borrelia burgdorferi 80a]
 gi|312149338|gb|ADQ29409.1| protein RecA [Borrelia burgdorferi N40]
          Length = 365

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 178/330 (53%), Positives = 255/330 (77%), Gaps = 4/330 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           +    K +A+E A  QI++ +GKG+++++G    + +GI+ +SSGS+ LD ALGIGG+P+
Sbjct: 15  IERSSKEEAIELARVQIEKAFGKGSLIKMGE-SPVGQGIKSMSSGSIVLDEALGIGGYPR 73

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+ LGV++  L +SQ
Sbjct: 74  GRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQ 133

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI + L+RSG VD+IV+DSVAALTP+ EI+G+MG+S  G+QARLMS+ALRK+
Sbjct: 134 PDTGEQALEIAEHLIRSGGVDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKI 193

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKD 243
           T  +S+S   ++FINQ+RM+IGVMFG+PETTTGGNALKFYSS+RL++R++  +      D
Sbjct: 194 TGILSKSNTCIMFINQIRMRIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTSSGSSD 253

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+ RVK+VKNK+A PF++VE  I +G+GIS    ++D  +K +++ K+G+W+S   
Sbjct: 254 DVIGNKIRVKIVKNKVAPPFRKVELIIYFGKGISREAGILDAAIKHNLIQKTGSWYSLGD 313

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQ 333
            +LGQGRE+   +L + +E+A N++  LR+
Sbjct: 314 NKLGQGRESVIEYLSKEVELANNLDKRLRK 343


>gi|224532802|ref|ZP_03673418.1| protein RecA [Borrelia burgdorferi WI91-23]
 gi|224512290|gb|EEF82675.1| protein RecA [Borrelia burgdorferi WI91-23]
          Length = 365

 Score =  302 bits (772), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 178/330 (53%), Positives = 255/330 (77%), Gaps = 4/330 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           +    K +A+E A  QI++ +GKG+++++G    + +GI+ +SSGS+ LD ALGIGG+P+
Sbjct: 15  IERSSKEEAIELARVQIEKAFGKGSLIKMGE-SPVGQGIKSMSSGSIILDEALGIGGYPR 73

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+ LGV++  L +SQ
Sbjct: 74  GRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQ 133

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI + L+RSG VD+IV+DSVAALTP+ EI+G+MG+S  G+QARLMS+ALRK+
Sbjct: 134 PDTGEQALEIAEYLIRSGGVDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKI 193

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKD 243
           T  +S+S   ++FINQ+RM+IGVMFG+PETTTGGNALKFYSS+RL++R++  +      D
Sbjct: 194 TGILSKSNTCIMFINQIRMRIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTRSGSSD 253

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+ RVK+VKNK+A PF++VE  I +G+GIS    ++D  +K +++ K+G+W+S   
Sbjct: 254 DVIGNKIRVKIVKNKVAPPFRKVELIIYFGKGISREAGILDAAIKHNLIQKTGSWYSLGD 313

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQ 333
            +LGQGRE+   +L + +E+A N++  LR+
Sbjct: 314 NKLGQGRESVIEYLSKEVELANNLDKRLRK 343


>gi|224538961|ref|ZP_03679500.1| hypothetical protein BACCELL_03858 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519428|gb|EEF88533.1| hypothetical protein BACCELL_03858 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 297

 Score =  302 bits (772), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 189/293 (64%), Positives = 243/293 (82%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +EV+ SGS+GL++ALG+GG+P+GRI+EIYGPESSGKTTLA+H IA++QK GG  AF+D
Sbjct: 1   EQVEVIPSGSIGLNVALGVGGYPRGRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHA D  YA KLGVD+ NLLISQPD GEQALEI + L+RS A+DIIV+DSVAALTP+AE
Sbjct: 61  AEHAFDRFYAAKLGVDVDNLLISQPDNGEQALEIAEQLIRSSAIDIIVVDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           IEGDMG++  G+QARLMSQALRKLT+++S+++   +FINQ+R KIGVMFG+PETTTGGNA
Sbjct: 121 IEGDMGDNKVGLQARLMSQALRKLTAAVSKTRTTCIFINQLREKIGVMFGNPETTTGGNA 180

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LKFY+SVRLDIR   +IK+ D + G QT+VKVVKNK+A PF++ EFDIM+GEGIS  GE+
Sbjct: 181 LKFYASVRLDIRGSQAIKNGDEVLGKQTKVKVVKNKVAPPFRRAEFDIMFGEGISRAGEI 240

Query: 283 IDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
           IDLG +  IV KSG+WFS+   ++ QGR+ +K  + +N E+AE +E L+ +  
Sbjct: 241 IDLGAELGIVKKSGSWFSYNDTKIAQGRDAAKQVIADNPELAEELEGLIFEAL 293


>gi|2500089|sp|Q59597|RECA_NEIFL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|1354913|gb|AAB49192.1| RecA [Neisseria flavescens]
          Length = 274

 Score =  302 bits (772), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 189/275 (68%), Positives = 231/275 (84%), Gaps = 1/275 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM++       E ++V+S+GSLG+D+ALG+GG P+GR+VEI+GPESSGKTTL L  IAQ
Sbjct: 1   SIMKM-DGSQQEENLDVISTGSLGVDLALGVGGLPRGRVVEIFGPESSGKTTLCLEAIAQ 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GG CAF+DAEHA D IYARKLGV ++ L +SQPDTGEQALEI D LVRSG +D++V
Sbjct: 60  CQKNGGICAFIDAEHAFDPIYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGIDMVV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  I R+  ++VFINQ+RMKIGVM
Sbjct: 120 VDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGHIKRTNTLVVFINQIRMKIGVM 179

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FGSPETTTGGNALKFY+SVRLDIRR G IK  D + GN+T+VKV+KNK+A PF+Q EFDI
Sbjct: 180 FGSPETTTGGNALKFYASVRLDIRRTGQIKKGDDVIGNETKVKVIKNKVAPPFRQAEFDI 239

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           +YGEGIS+ GELIDLGVK  IV+KSGAW+S+ G +
Sbjct: 240 LYGEGISWEGELIDLGVKHDIVEKSGAWYSYNGAK 274


>gi|159146596|gb|ABW90742.1| recombinase A [Vibrio chagasii]
 gi|159146622|gb|ABW90755.1| recombinase A [Vibrio chagasii]
          Length = 278

 Score =  302 bits (772), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 193/280 (68%), Positives = 236/280 (84%), Gaps = 2/280 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGP
Sbjct: 1   LAAALGQIEKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 ICDALARSGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           KNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +VDK+
Sbjct: 239 KNKIAAPFKQAETQILYGQGFNREGELIDLGVKNKLVDKA 278


>gi|2500090|sp|Q59619|RECA_NEIMU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|1354923|gb|AAB49197.1| RecA [Neisseria mucosa]
          Length = 274

 Score =  302 bits (772), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 189/275 (68%), Positives = 231/275 (84%), Gaps = 1/275 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM++       E ++V+S+GSLG+D+ALG+GG P+GR+VEI+GPESSGKTTL L  IAQ
Sbjct: 1   SIMKM-DGSQQEENLDVISTGSLGVDLALGVGGLPRGRVVEIFGPESSGKTTLCLEAIAQ 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GG CAF+DAEHA D IYARKLGV ++ L +SQPDTGEQALEI D LVRSG VD++V
Sbjct: 60  CQKNGGICAFIDAEHAFDPIYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGVDMVV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  I R+  ++VFINQ+RMKIGVM
Sbjct: 120 VDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGHIKRTNTLVVFINQIRMKIGVM 179

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FGSPETTTGGNALKFY+SVRLDIRR G IK  D + GN+T+VKV+KNK+A PF+Q EFDI
Sbjct: 180 FGSPETTTGGNALKFYASVRLDIRRTGQIKKGDDVIGNETKVKVIKNKVAPPFRQAEFDI 239

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           +YGEG+S+ GELIDLGVK  IV+KSGAW+S+ G +
Sbjct: 240 LYGEGVSWEGELIDLGVKYDIVEKSGAWYSYNGAK 274


>gi|148879007|emb|CAM07019.1| RecA protein [Mycobacterium llatzerense]
          Length = 270

 Score =  301 bits (771), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 182/269 (67%), Positives = 228/269 (84%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KL
Sbjct: 1   DVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD  +LL+SQPDTGEQALEI DMLVRSGA+ ++VIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDSLLVSQPDTGEQALEIADMLVRSGAISLLVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           ARLMSQALRK+T +++ S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR
Sbjct: 121 ARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRR 180

Query: 236 VGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           + ++KD     GN+TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KS
Sbjct: 181 IETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEQGFIRKS 240

Query: 296 GAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           G+WF+++G++LGQG+EN++ FL EN+++A
Sbjct: 241 GSWFTYEGEQLGQGKENARNFLLENVDVA 269


>gi|76563867|gb|ABA46365.1| RecA [Photobacterium halotolerans]
          Length = 276

 Score =  301 bits (771), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 187/278 (67%), Positives = 237/278 (85%), Gaps = 2/278 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL
Sbjct: 1   EKEFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTL 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L TIA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RS
Sbjct: 59  TLETIAAAQRKGKTCAFIDAEHALDPIYAKKLGVDIDQLLVSQPDTGEQALEICDALARS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVD+IV+DS+AALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+
Sbjct: 119 GAVDMIVVDSIAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PF
Sbjct: 179 RMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
           KQ +  I+YG+G +  GELIDLGVK  +++K+GAW+S+
Sbjct: 239 KQADTQILYGQGFNRNGELIDLGVKQKLIEKAGAWYSY 276


>gi|312879352|ref|ZP_07739152.1| RecA protein [Aminomonas paucivorans DSM 12260]
 gi|310782643|gb|EFQ23041.1| RecA protein [Aminomonas paucivorans DSM 12260]
          Length = 376

 Score =  301 bits (771), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 161/356 (45%), Positives = 240/356 (67%), Gaps = 6/356 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K+   + +   L+ A+ +I+  +G GAIM+LG Q      +  + +G L LD+ALGIGG 
Sbjct: 3   KKKEALTREDVLDQAIDEIRAKFGDGAIMRLGEQAKACADV--IPTGILPLDVALGIGGI 60

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GR+VEI+GPE +GKTTLALH IA++QK GG  AF+DAEHALD   A  +GVD   L +
Sbjct: 61  PRGRVVEIFGPEGTGKTTLALHAIAEAQKAGGIAAFIDAEHALDPRLAAAVGVDTAALYL 120

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQAL 183
           SQPD+GEQAL I D LVRSGAVD++V+DSVAALTP+AEI+G MGE +  G+QARLMS AL
Sbjct: 121 SQPDSGEQALYILDTLVRSGAVDLVVVDSVAALTPQAEIDGKMGEGTQVGLQARLMSYAL 180

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           R+LT++IS+S+  + FINQ+R +I   +     ETTTGG ALKFYSSVR++++R  ++  
Sbjct: 181 RRLTAAISKSRTTVAFINQLRAQISTGYSQGPQETTTGGRALKFYSSVRIEVKRGKAVTQ 240

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            +   G++  ++VVKNK A PF+     ++YG+G+     ++D+ +   +V + G+W ++
Sbjct: 241 GEETIGHELWIRVVKNKQAPPFRGAHTTLIYGKGVPKAMSVLDMALDHEVVKRKGSWLAY 300

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           KG+ LGQG+E+   +L E+ E+ + I   + +   +    L +E     +++A  +
Sbjct: 301 KGETLGQGKESVSHYLSEHPELMDEITQDVLRTV-VPGFELPEEKTDPVQEEAGFE 355


>gi|156067095|gb|ABR12765.2| recombinase A [Photobacterium indicum]
          Length = 278

 Score =  301 bits (771), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 193/280 (68%), Positives = 236/280 (84%), Gaps = 2/280 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGP
Sbjct: 1   LAAALGQIEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L TIA +Q+   TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLETIAAAQRVNKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGAVD+IVIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 ICDALARSGAVDLIVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           KNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +V+K+
Sbjct: 239 KNKIAAPFKQAETQILYGQGFNRNGELIDLGVKHKLVEKA 278


>gi|110264803|gb|ABG56977.1| recA protein [Photobacterium leiognathi subsp. mandapamensis]
 gi|110264807|gb|ABG56979.1| recA protein [Photobacterium leiognathi subsp. mandapamensis]
 gi|156067101|gb|ABR12770.2| recombinase A [Photobacterium leiognathi subsp. mandapamensis]
 gi|156067103|gb|ABR12771.2| recombinase A [Photobacterium leiognathi subsp. mandapamensis]
 gi|159146616|gb|ABW90752.1| recombinase A [Photobacterium leiognathi]
          Length = 278

 Score =  301 bits (771), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 190/280 (67%), Positives = 237/280 (84%), Gaps = 2/280 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGP
Sbjct: 1   LAAALGQIEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L TIA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLETIAAAQRKGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 ICDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           KNK+A+PFKQ +  I+YG+G +  GEL+DLGVK  +V+K+
Sbjct: 239 KNKIAAPFKQADTQILYGQGFNRNGELVDLGVKHKLVEKA 278


>gi|159894950|gb|ABX09821.1| recombinase A [Vibrio splendidus]
          Length = 278

 Score =  301 bits (771), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 190/280 (67%), Positives = 236/280 (84%), Gaps = 2/280 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGP
Sbjct: 1   LAAALGQIEKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA +Q+ G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLELIAAAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGA+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 ICDALARSGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVV
Sbjct: 179 MAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           KNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +V+K+
Sbjct: 239 KNKIAAPFKQAETQILYGKGFNREGELIDLGVKNKLVEKA 278


>gi|159894926|gb|ABX09809.1| recombinase A [Vibrio sp. MWB21]
 gi|159894928|gb|ABX09810.1| recombinase A [Vibrio sp. MWB28]
 gi|159894930|gb|ABX09811.1| recombinase A [Vibrio sp. MWB29]
 gi|159894932|gb|ABX09812.1| recombinase A [Vibrio sp. MWB30]
 gi|159894934|gb|ABX09813.1| recombinase A [Vibrio sp. B356]
 gi|159894936|gb|ABX09814.1| recombinase A [Vibrio sp. fram1]
 gi|159894938|gb|ABX09815.1| recombinase A [Vibrio sp. GB-215]
 gi|159894940|gb|ABX09816.1| recombinase A [Vibrio sp. idb.1.4]
 gi|159894942|gb|ABX09817.1| recombinase A [Vibrio sp. SB-84]
 gi|159894944|gb|ABX09818.1| recombinase A [Vibrio sp. seaur.1.1]
          Length = 278

 Score =  301 bits (771), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 184/280 (65%), Positives = 235/280 (83%), Gaps = 2/280 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGP
Sbjct: 1   LAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 ICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           KNK+A+PFK+    IMYG+G +  GEL+DLGVK  +V+K+
Sbjct: 239 KNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKA 278


>gi|171915859|ref|ZP_02931329.1| recA protein [Verrucomicrobium spinosum DSM 4136]
          Length = 374

 Score =  301 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 181/325 (55%), Positives = 246/325 (75%), Gaps = 3/325 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           ++K LE A+ QI + YG+G+I+++G +      I ++ +G+L +D ALGIGGFP+GR+VE
Sbjct: 21  RAKNLEMAIQQIHKDYGEGSILRMGEENRT--EISIIPTGNLLIDQALGIGGFPRGRVVE 78

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTL L  IAQ+QKTGG  AF+D EHALD  YARKLGV ++ LL+SQP +GE
Sbjct: 79  VYGPESSGKTTLTLTVIAQAQKTGGLAAFIDVEHALDPNYARKLGVKMEELLVSQPSSGE 138

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           +AL I + LVRS A+D+IVIDSVAAL  R E+EG++G++  G QARLMS ALRKLT+ IS
Sbjct: 139 EALRICETLVRSNALDVIVIDSVAALVTRQELEGEIGDATVGAQARLMSAALRKLTAIIS 198

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQT 250
           +++   +F NQ+R K+GVMFG+PETT GG ALKFYSSVR+DIRR+G+IK  D + TGN+T
Sbjct: 199 KARTCCIFTNQIREKVGVMFGNPETTPGGKALKFYSSVRIDIRRIGAIKSSDGTTTGNRT 258

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           +VKVVKNK+A P+ + EFDIMY EGIS  G L+DL ++  I+ K G+W S+KG +L QGR
Sbjct: 259 KVKVVKNKLAPPYTEAEFDIMYNEGISGVGSLLDLALEYDILQKRGSWISYKGTQLAQGR 318

Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335
           +  K  L+ +  +  ++E  ++   
Sbjct: 319 DACKEALKADTALYADVEEQVKARL 343


>gi|159894946|gb|ABX09819.1| recombinase A [Vibrio harveyi]
          Length = 278

 Score =  301 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 186/280 (66%), Positives = 235/280 (83%), Gaps = 2/280 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGP
Sbjct: 1   LAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 ICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           KNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+K+
Sbjct: 239 KNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKA 278


>gi|224011577|ref|XP_002295563.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|209583594|gb|ACI64280.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 428

 Score =  301 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 184/359 (51%), Positives = 260/359 (72%), Gaps = 8/359 (2%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           + + + N   K  ALE  LS+I+R YG+G+I++LG    +   ++ + SGSL LD+ALG 
Sbjct: 59  NSKSQGNNKAKLSALEGVLSRIERNYGRGSIVKLGDADRMV--VDCIGSGSLTLDVALG- 115

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+PKGR++EIYGPESSGKTTLALH +A++Q++GG  AFVDAEHALD  YA  LGVD+ +
Sbjct: 116 GGYPKGRVIEIYGPESSGKTTLALHALAEAQQSGGIAAFVDAEHALDPAYAAALGVDIDS 175

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPD+GE AL+I D LVRS AVD+IV+DSVAAL PRAE+EGDM +   G+QARLMS+
Sbjct: 176 LLVSQPDSGEMALDIVDQLVRSAAVDVIVVDSVAALVPRAELEGDMSDMQVGLQARLMSK 235

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRK+TSS+S S+C ++F+NQ+R K+GV++GSPE T+GGNALKFY+SVRLD RR   +  
Sbjct: 236 ALRKITSSLSLSQCTVIFLNQLRSKVGVIYGSPEVTSGGNALKFYASVRLDTRRREVL-- 293

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
                G + +VKVVKNK+A+PFK +E DI++GEGI   G L+D  +   +V + G+W+S+
Sbjct: 294 -PDNMGIRAKVKVVKNKVAAPFKVIELDILFGEGIDQMGCLLDAALDLDVVQRKGSWYSY 352

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNA--GLVADSLLQEPAINTKDDADKDD 358
           +     QGR N+ ++L+ N E+A+ +E  +R+      +    L E   + +D  + ++
Sbjct: 353 QDSNFAQGRYNASVYLKGNAEVAKRMEKEVREALLSAKLPKGALGEGGGDVEDYVEMEE 411


>gi|110264795|gb|ABG56973.1| recA protein [Photobacterium leiognathi]
 gi|110264797|gb|ABG56974.1| recA protein [Photobacterium leiognathi]
          Length = 277

 Score =  301 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 190/279 (68%), Positives = 236/279 (84%), Gaps = 2/279 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGP
Sbjct: 1   LAAALGQIEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L TIA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLETIAAAQRKGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 ICDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK 294
           KNK+A+PFKQ +  I+YG+G +  GEL+DLGVK  +V+K
Sbjct: 239 KNKIAAPFKQADTQILYGQGFNRNGELVDLGVKHKLVEK 277


>gi|159146598|gb|ABW90743.1| recombinase A [Vibrio vulnificus]
 gi|159146600|gb|ABW90744.1| recombinase A [Vibrio vulnificus]
 gi|159146602|gb|ABW90745.1| recombinase A [Vibrio vulnificus]
 gi|159146608|gb|ABW90748.1| recombinase A [Vibrio vulnificus]
 gi|159146612|gb|ABW90750.1| recombinase A [Vibrio vulnificus]
 gi|159146614|gb|ABW90751.1| recombinase A [Vibrio vulnificus]
 gi|159146624|gb|ABW90756.1| recombinase A [Vibrio vulnificus]
 gi|159146626|gb|ABW90757.1| recombinase A [Vibrio vulnificus]
          Length = 278

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 186/280 (66%), Positives = 235/280 (83%), Gaps = 2/280 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GP
Sbjct: 1   LAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDQLLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 ICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           KNK+A+PFK+    IMYG+G +  GELIDLGVK  +++KS
Sbjct: 239 KNKIAAPFKEANTQIMYGQGFNREGELIDLGVKCKLIEKS 278


>gi|763054|gb|AAA85501.1| RecA [Streptococcus pyogenes NZ131]
          Length = 326

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 175/312 (56%), Positives = 234/312 (75%), Gaps = 4/312 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            SGSL LDIA   GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD
Sbjct: 2   RSGSLALDIAWIAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALD 61

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
             YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G
Sbjct: 62  PAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIG 121

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+S
Sbjct: 122 DSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYAS 181

Query: 229 VRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           VRLD+R    IK     K +  G +T++KVVKNK+A PFK  E +IMYGEGIS  GEL+ 
Sbjct: 182 VRLDVRGNNQIKGTGDQKIASIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVK 241

Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344
           +     I+ K+GAWFS+ G+++GQG EN+K +L ++ ++ + I+  +R   GL+ +S  +
Sbjct: 242 IASDLDIIQKAGAWFSYNGEKIGQGSENAKRYLADHPQLFDEIDRKVRVKFGLLEESEEE 301

Query: 345 EPAINTKDDADK 356
                  ++ D 
Sbjct: 302 SAMAVASEETDD 313


>gi|179185392|gb|ACB78180.1| RecA [Vibrio gallaecicus]
          Length = 279

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 190/281 (67%), Positives = 237/281 (84%), Gaps = 2/281 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           +++ +GKG+IM+LG   ++   +E +S+GSL LD+ALG GG P GRIVE+YGPESSGKTT
Sbjct: 1   LKKQFGKGSIMRLGDNRTM--DVETISTGSLSLDVALGAGGLPMGRIVEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L R
Sbjct: 59  LTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALAR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGA+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 119 SGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQ 178

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+P
Sbjct: 179 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAP 238

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
           FKQ E  I+YG+G +  GELIDLGVK  +VDK+GA +S+ G
Sbjct: 239 FKQAETQILYGQGFNREGELIDLGVKNKLVDKAGARYSYNG 279


>gi|156067109|gb|ABR12776.2| recombinase A [Photobacterium kishitanii]
 gi|156067117|gb|ABR12780.2| recombinase A [Photobacterium kishitanii]
 gi|156067119|gb|ABR12781.2| recombinase A [Photobacterium kishitanii]
 gi|156067121|gb|ABR12782.2| recombinase A [Photobacterium kishitanii]
          Length = 278

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 193/280 (68%), Positives = 236/280 (84%), Gaps = 2/280 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGP
Sbjct: 1   LAAALGQIEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L TIA +QK G TCAF+DAEHALD IYA KLGVD+  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLETIAAAQKAGKTCAFIDAEHALDPIYAEKLGVDINQLLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 IVDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           KNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +V+K+
Sbjct: 239 KNKIAAPFKQAETQILYGQGFNRNGELIDLGVKHKLVEKA 278


>gi|89145040|emb|CAJ57528.1| recombinase A [Microbacterium oxydans]
          Length = 267

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 184/267 (68%), Positives = 221/267 (82%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
            LD+ALG+GG P+GRIVEIYGPESSGKTTL LH IA +Q+ GG  AF+DAEHALD  YA 
Sbjct: 1   ALDVALGVGGLPRGRIVEIYGPESSGKTTLTLHAIANAQRAGGIAAFIDAEHALDPDYAA 60

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
           KLGVD+  LL+SQPDTGEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G
Sbjct: 61  KLGVDIDALLVSQPDTGEQALEIADMLVRSGAIDLIVIDSVAALVPRAEIEGEMGDSHVG 120

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
           +QARLMSQALRKLT  ++++   ++FINQ+R KIGV FGSPETT GG ALKFY+SVR+DI
Sbjct: 121 LQARLMSQALRKLTGGLNQTNTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRMDI 180

Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVD 293
           RR+ ++KD     GN+TRVKVVKNKMA PFKQ EFDI+YG GIS  G LID GV+ +IV 
Sbjct: 181 RRIETLKDGTDAVGNRTRVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDFGVEHAIVK 240

Query: 294 KSGAWFSFKGQRLGQGRENSKIFLREN 320
           KSG+W+++ G +LGQG+EN++ FL  N
Sbjct: 241 KSGSWYTYDGDQLGQGKENARTFLLNN 267


>gi|306450659|gb|ADM88582.1| RecA [Propionibacterium acnes]
          Length = 280

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 186/279 (66%), Positives = 229/279 (82%), Gaps = 2/279 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+ KAL  AL QI++ +GKG+IM+LG Q ++   I  + +GS+ LD+ALG+GG P+GR
Sbjct: 4   TADREKALATALQQIEKQHGKGSIMRLGEQETV--KIAAIPTGSVALDVALGVGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEIYGPESSGKTT+ALH IA +Q  GG CAF+DAEHALD  YARKLGVD  +LL+SQPD
Sbjct: 62  IVEIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPEYARKLGVDTDSLLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GEQALEI D LVRSGA+++IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T 
Sbjct: 122 NGEQALEIADTLVRSGALELIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +++ +    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RRV ++KD   + GN
Sbjct: 182 ALNAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRVETLKDGSEMVGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           +TRVKV KNK+A PFKQ EFDI+YG+GIS  G LID+GV
Sbjct: 242 RTRVKVAKNKVAPPFKQAEFDILYGQGISREGSLIDMGV 280


>gi|110264779|gb|ABG56965.1| recA protein [Photobacterium kishitanii]
 gi|156067105|gb|ABR12774.2| recombinase A [Photobacterium kishitanii]
          Length = 278

 Score =  300 bits (767), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 193/280 (68%), Positives = 236/280 (84%), Gaps = 2/280 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGP
Sbjct: 1   LAAALGQIEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L TIA +QK G TCAF+DAEHALD IYA KLGVD+  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLETIAAAQKVGKTCAFIDAEHALDPIYAEKLGVDINQLLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 IVDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           KNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +V+K+
Sbjct: 239 KNKIAAPFKQAETQILYGQGFNRNGELIDLGVKHKLVEKA 278


>gi|159146618|gb|ABW90753.1| recombinase A [Vibrio cholerae]
 gi|159146620|gb|ABW90754.1| recombinase A [Vibrio cholerae]
          Length = 278

 Score =  300 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 186/280 (66%), Positives = 235/280 (83%), Gaps = 2/280 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GP
Sbjct: 1   LAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 ICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           KNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KS
Sbjct: 239 KNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKS 278


>gi|110264741|gb|ABG56946.1| recA protein [Photobacterium kishitanii]
 gi|110264757|gb|ABG56954.1| recA protein [Photobacterium kishitanii]
 gi|110264759|gb|ABG56955.1| recA protein [Photobacterium kishitanii]
 gi|110264769|gb|ABG56960.1| recA protein [Photobacterium kishitanii]
 gi|110264771|gb|ABG56961.1| recA protein [Photobacterium kishitanii]
          Length = 277

 Score =  300 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 193/279 (69%), Positives = 235/279 (84%), Gaps = 2/279 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGP
Sbjct: 1   LAAALGQIEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L TIA +QK G TCAF+DAEHALD IYA KLGVD+  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLETIAAAQKAGKTCAFIDAEHALDPIYAEKLGVDINQLLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 IVDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK 294
           KNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +V+K
Sbjct: 239 KNKIAAPFKQAETQILYGQGFNRNGELIDLGVKHKLVEK 277


>gi|45176|emb|CAA46057.1| reca peptidase [Neisseria meningitidis]
          Length = 274

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 193/275 (70%), Positives = 232/275 (84%), Gaps = 1/275 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           AIM++       E +EV+S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKTTL L  +AQ
Sbjct: 1   AIMKM-DGSQQEENLEVISTGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVAQ 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDTGEQALEI D LVRSG VD++V
Sbjct: 60  CQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGVDMVV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  I ++  ++VFINQ+RMKIGVM
Sbjct: 120 VDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVM 179

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FGSPETTTGGNALKFYSSVRLDIRR GSIK  + + GN+TRVKV+KNK+A PF+Q EFDI
Sbjct: 180 FGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNETRVKVIKNKVAPPFRQAEFDI 239

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           +YGEGIS+ GELID+GVK  I++KSGAW+S+ G +
Sbjct: 240 LYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAK 274


>gi|148793418|gb|ABR12773.1| recombinase A [Photobacterium phosphoreum]
 gi|156025125|gb|ABR12772.2| recombinase A [Photobacterium phosphoreum]
 gi|156067123|gb|ABR12783.2| recombinase A [Photobacterium phosphoreum]
 gi|156067141|gb|ABR12792.2| recombinase A [Photobacterium phosphoreum]
 gi|156067143|gb|ABR12793.2| recombinase A [Photobacterium phosphoreum]
 gi|156067147|gb|ABR12795.2| recombinase A [Photobacterium phosphoreum]
 gi|156067153|gb|ABR12798.2| recombinase A [Photobacterium phosphoreum]
          Length = 278

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 192/280 (68%), Positives = 236/280 (84%), Gaps = 2/280 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGP
Sbjct: 1   LAAALGQIEKQFGKGSIMKLGDNKTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  I+ +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLEVISAAQKQGKTCAFIDAEHALDPIYAQKLGVDINELLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 IVDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           KNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +V+K+
Sbjct: 239 KNKIAAPFKQAETQILYGQGFNRNGELIDLGVKNKLVEKA 278


>gi|23321291|gb|AAN23140.1| RecA protein [Vibrio cholerae]
 gi|23321293|gb|AAN23141.1| RecA protein [Vibrio cholerae]
 gi|23321295|gb|AAN23142.1| RecA protein [Vibrio cholerae]
          Length = 289

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 181/275 (65%), Positives = 232/275 (84%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV+
Sbjct: 1   LGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVN 60

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR+
Sbjct: 61  IDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARM 120

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           +SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+
Sbjct: 121 LSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGA 180

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW
Sbjct: 181 IKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAW 240

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           +S+ G ++GQG+ N+  +L+EN EIA+ ++  LR+
Sbjct: 241 YSYNGDKIGQGKANACKYLKENPEIAKTLDKKLRE 275


>gi|225847998|ref|YP_002728161.1| protein RecA [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643872|gb|ACN98922.1| protein RecA [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 340

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 179/334 (53%), Positives = 258/334 (77%), Gaps = 9/334 (2%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           +E ++  K KALE+A+ QI++ YGKG++M L S+G   + +EV+ SGS+ LDIA GIGG 
Sbjct: 3   EEKDLEAKKKALESAILQIEKRYGKGSLMTLSSEG--VKSVEVIPSGSISLDIATGIGGI 60

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGR++EIYGPESSGKTTL LH IA++QK GG   F+DAEHA D  YA+ +GV+L +L+I
Sbjct: 61  PKGRVIEIYGPESSGKTTLTLHIIAEAQKKGGKAVFIDAEHAFDPKYAKAIGVNLDDLII 120

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD GEQA+EI + LVRS A+D+IVIDSVAAL P+AE+EGD+ +S  G+ ARLMS+A+R
Sbjct: 121 SQPDYGEQAIEIAETLVRSNAIDVIVIDSVAALVPKAELEGDIEDSNVGLHARLMSKAMR 180

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
            L  ++++S   L+ INQ+R K+GVMFG+PETTTGG A+KF++ +R+++R+   +K    
Sbjct: 181 VLKGAVNKSNTALILINQIREKVGVMFGNPETTTGGRAIKFFADMRMEVRKSD-LKTDGE 239

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
             G++ +VKVVKNK+A PFK+ EFD++YGEGIS  GE++DLG +  ++ KSG+W+S+K +
Sbjct: 240 KVGSRVKVKVVKNKLAPPFKEAEFDVIYGEGISKEGEILDLGEEIGVIKKSGSWYSYKDE 299

Query: 305 ------RLGQGRENSKIFLRENIEIAENIESLLR 332
                 +LGQGRE ++ FL++N ++ + IE+L++
Sbjct: 300 DTKEEIKLGQGREKAREFLKQNPDVTQKIENLIK 333


>gi|225551986|ref|ZP_03772926.1| protein RecA [Borrelia sp. SV1]
 gi|225370984|gb|EEH00414.1| protein RecA [Borrelia sp. SV1]
          Length = 365

 Score =  299 bits (765), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 177/330 (53%), Positives = 253/330 (76%), Gaps = 4/330 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           +    K +A+E A  QI++ +GKG+++++G    + +GI+ +SSGS+ LD ALGIGG+P+
Sbjct: 15  VERASKEEAIELARVQIEKAFGKGSLIKMGE-SPVGQGIKSMSSGSIILDEALGIGGYPR 73

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+ LGV++  L +SQ
Sbjct: 74  GRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQ 133

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI + L+RSG VD+IV+DSVAALTP+ EI+G+MG+S  G+QARLMS+ALRK+
Sbjct: 134 PDTGEQALEIAEHLIRSGGVDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKI 193

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKD 243
           T  +S+S   ++FINQ+RMKIGVMFG+PETTTGGNALKFYSS+RL++R++  +      D
Sbjct: 194 TGILSKSNTCIMFINQIRMKIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTRSGSSD 253

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+ RVK+VKNK+A PF++VE  I +G+GI     ++D  +K +++ K+G+W+S   
Sbjct: 254 DVIGNKIRVKIVKNKVAPPFRKVELIIYFGKGILREAGILDAAIKHNLIQKTGSWYSLGD 313

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQ 333
            +LGQGRE+    L + +E+A +++  LR+
Sbjct: 314 NKLGQGRESVIEHLSKEVELANDLDKRLRK 343


>gi|9911106|sp|P97195|RECA_NEILA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|12644366|sp|P96955|RECA_NEIPO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|7443877|pir||S24742 recombination protein recA - Neisseria meningitidis  (fragment)
 gi|44979|emb|CAA46054.1| reca peptidase [Neisseria gonorrhoeae]
 gi|45016|emb|CAA46061.1| reca peptidase [Neisseria meningitidis]
 gi|45048|emb|CAA46060.1| reca peptidase [Neisseria meningitidis]
 gi|45054|emb|CAA46056.1| reca peptidase [Neisseria meningitidis]
 gi|45060|emb|CAA46059.1| reca peptidase [Neisseria meningitidis]
 gi|45104|emb|CAA46062.1| reca peptidase [Neisseria meningitidis]
 gi|45162|emb|CAA46058.1| reca peptidase [Neisseria meningitidis]
 gi|45247|emb|CAA46055.1| reca peptidase [Neisseria meningitidis]
 gi|1354915|gb|AAB49193.1| RecA [Neisseria gonorrhoeae]
 gi|1354917|gb|AAB49194.1| RecA [Neisseria lactamica]
 gi|1354921|gb|AAB49196.1| RecA [Neisseria meningitidis]
 gi|1354925|gb|AAB49198.1| RecA [Neisseria polysaccharea]
          Length = 274

 Score =  299 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 192/275 (69%), Positives = 232/275 (84%), Gaps = 1/275 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           AIM++       E +EV+S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKTTL L  +AQ
Sbjct: 1   AIMKM-DGSQQEENLEVISTGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVAQ 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDTGEQALEI D LVRSG +D++V
Sbjct: 60  CQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGIDMVV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  I ++  ++VFINQ+RMKIGVM
Sbjct: 120 VDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVM 179

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FGSPETTTGGNALKFYSSVRLDIRR GSIK  + + GN+TRVKV+KNK+A PF+Q EFDI
Sbjct: 180 FGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNETRVKVIKNKVAPPFRQAEFDI 239

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           +YGEGIS+ GELID+GVK  I++KSGAW+S+ G +
Sbjct: 240 LYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAK 274


>gi|21624597|gb|AAM68118.1| RecA [Bordetella holmesii]
 gi|21624599|gb|AAM68119.1| RecA [Bordetella holmesii]
 gi|21624601|gb|AAM68120.1| RecA [Bordetella holmesii]
 gi|21624603|gb|AAM68121.1| RecA [Bordetella holmesii]
          Length = 296

 Score =  299 bits (764), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 205/275 (74%), Positives = 242/275 (88%), Gaps = 1/275 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+ G    +   I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 22  QIEKQFGKGSIMRYGDN-EVEHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 80

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGTCAFVDAEHALD  YA KLGV+L +LLISQPDTGEQALEITD LV
Sbjct: 81  TLTLQVIAEMQKIGGTCAFVDAEHALDVQYASKLGVNLADLLISQPDTGEQALEITDALV 140

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT++I R+ C+++FIN
Sbjct: 141 RSGSVDLIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFIN 200

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A 
Sbjct: 201 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKGDEVVGNETRVKVVKNKVAP 260

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
           PFKQ EFDIMYG GIS  GE+IDLGV A++V+KSG
Sbjct: 261 PFKQAEFDIMYGAGISREGEIIDLGVAANVVEKSG 295


>gi|224087995|ref|XP_002308284.1| predicted protein [Populus trichocarpa]
 gi|222854260|gb|EEE91807.1| predicted protein [Populus trichocarpa]
          Length = 418

 Score =  299 bits (764), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 188/363 (51%), Positives = 254/363 (69%), Gaps = 13/363 (3%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N+  K  AL+ AL QI   +GKGAIM  G +    + + VVS+GS  LDIALG GGFP
Sbjct: 52  EENMSKKELALQQALDQITSQFGKGAIMWFG-RSEAPKNVPVVSTGSFALDIALGCGGFP 110

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR+VEI+GPE+SGKTTLALH IA++QK GG C FVDAEHALDS  A+ +GV+ +NLL+S
Sbjct: 111 KGRVVEIFGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDSSLAKAIGVNTENLLLS 170

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQAL + D L+RSG+VD++V+DSVAAL P++E++G+MG++   MQARLMSQALRK
Sbjct: 171 QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKSELDGEMGDAHMAMQARLMSQALRK 230

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           L+ S+S+S+ ILVFINQ+R K+         E T GGNALKFY+SVRL+IRRVG IK  +
Sbjct: 231 LSHSLSQSQTILVFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIRRVGFIKKGE 290

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
             TG Q +VK+VKNK+A PFK V+F++ +G+GIS   E+I+L +K  ++ KSG+++   G
Sbjct: 291 ETTGTQVQVKIVKNKLAPPFKTVQFELEFGKGISRESEIIELALKHKLIKKSGSFYDCNG 350

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNA-------GLVADSLLQEPAIN--TKDDA 354
           ++   G+E  K FL  N ++ E +   LR+          L  +S   EP     + D  
Sbjct: 351 KK-YHGKEAFKEFLAHNDDVQEELMMKLREKLLEGETGQELGDESTDGEPTQEIISPDST 409

Query: 355 DKD 357
           D++
Sbjct: 410 DEE 412


>gi|303271543|ref|XP_003055133.1| recA DNA recombinase [Micromonas pusilla CCMP1545]
 gi|226463107|gb|EEH60385.1| recA DNA recombinase [Micromonas pusilla CCMP1545]
          Length = 446

 Score =  298 bits (763), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 166/334 (49%), Positives = 230/334 (68%), Gaps = 5/334 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +D   +     K +AL+  L +I   +GKG+IM+LG+       +    SG++ LDIALG
Sbjct: 87  LDPETQKVKDAKLRALDRVLGEIDANFGKGSIMKLGTASQA--KVATFPSGAMTLDIALG 144

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG P+GRIVE+YGPESSGKTTLALH +A+ QK GG  A +DAEHA D  Y+ +LGV + 
Sbjct: 145 -GGLPRGRIVEVYGPESSGKTTLALHAMAEMQKFGGNVALIDAEHAFDPEYSARLGVKVN 203

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            +++ QP+TGE  LE+ D LVRSG +D+IV+DSVAAL PR+EIEG++G    G  ARLMS
Sbjct: 204 EVIVCQPETGEMGLEVVDALVRSGGIDLIVVDSVAALVPRSEIEGEIGMVQVGAHARLMS 263

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI- 239
           QALRK+  + +++   ++F+NQ+R K+GV++G+PE TTGGNALKFY+SVRLDIRR   I 
Sbjct: 264 QALRKINVNAAKAGVTIIFLNQLRSKVGVIYGNPEITTGGNALKFYASVRLDIRRKEVIK 323

Query: 240 -KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
            K  +   G + +VKV KNK+A P+K  EFD+++G GI   G  +D      +VDK GAW
Sbjct: 324 GKSGEDDLGTRVKVKVAKNKVAPPYKVAEFDMLFGRGIDPMGCTLDAADNMGVVDKRGAW 383

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           +S+  ++LGQGRE +   LREN  +  ++E  +R
Sbjct: 384 YSYNDEQLGQGREKTMEKLRENPAMLASVEKDVR 417


>gi|269793250|ref|YP_003318154.1| recA protein [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100885|gb|ACZ19872.1| recA protein [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 377

 Score =  298 bits (763), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 167/330 (50%), Positives = 235/330 (71%), Gaps = 5/330 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K    + +   LE A+ +I+  +G+GAIM+LG +      +EV+ +G L LD+ALGIGG 
Sbjct: 3   KRREALTREDVLEQAIDEIRSKFGEGAIMRLGDRA--LGQVEVIPTGILPLDVALGIGGL 60

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GRIVEI+GPE +GKTT+ALH +A++QK GG  AF+DAEHALD   A  LGVD+++L +
Sbjct: 61  PRGRIVEIFGPEGTGKTTIALHAVAEAQKAGGVAAFIDAEHALDPRLASALGVDIESLYL 120

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQAL 183
           SQPD+GEQAL I D LVRSGAVDIIV+DSVAALTP+AEI+G MGE S  G+QARLMS AL
Sbjct: 121 SQPDSGEQALYILDTLVRSGAVDIIVVDSVAALTPQAEIDGKMGEGSQVGLQARLMSYAL 180

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMF--GSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           R+LT++IS+SK  +VFINQ+R +I   +  G  ETTTGG ALKFYSSVR++++R  ++  
Sbjct: 181 RRLTAAISKSKTTVVFINQLRAQISTGYGQGPQETTTGGRALKFYSSVRVEVKRGKAVSQ 240

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            +   G++  +KVVKNK A PF+     ++YG+G+     ++D+ +   +V + G+W ++
Sbjct: 241 GEETIGHELWMKVVKNKQAPPFRSAHATLIYGKGVPRAMAVLDMALDYEVVKRKGSWLAY 300

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLL 331
           KG+ L QG+E +   L E+ E+ E I   +
Sbjct: 301 KGETLAQGKEGTAQHLMEHPELMEEITQEV 330


>gi|194246536|ref|YP_002004175.1| Recombinase A [Candidatus Phytoplasma mali]
 gi|254790440|sp|B3R0F8|RECA_PHYMT RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|193806893|emb|CAP18322.1| Recombinase A [Candidatus Phytoplasma mali]
          Length = 339

 Score =  298 bits (763), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 159/326 (48%), Positives = 246/326 (75%), Gaps = 4/326 (1%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           K LE  + ++++ +GKG+I +L S  +  + IE +S+GS+ LDIALGIGG+PKGRI+EI+
Sbjct: 16  KILEETIKEVEKQFGKGSIFKLNSNNN--QSIETISTGSMSLDIALGIGGYPKGRIIEIF 73

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTL LH IA++QK GG  AF+DAEHALD  YA+ +GV++  L++SQPD+GE+A
Sbjct: 74  GPESSGKTTLTLHAIAEAQKLGGNVAFIDAEHALDPKYAQAIGVNIDELVLSQPDSGEKA 133

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           L+I   L++SG++ ++VIDSVAALTP +E+ G+M +   G+QAR+M +A+R  +  IS++
Sbjct: 134 LDIATSLIKSGSISLLVIDSVAALTPESELMGEMKDINVGLQARMMGKAMRIQSGIISKT 193

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR-VGSIKDKDS-ITGNQTR 251
             ++++INQ+R K+G  +G+PE TTGG ALKF+ S+RLDIRR    IK+ +  I G ++ 
Sbjct: 194 NTVVIYINQLREKVGNFYGNPEVTTGGKALKFFCSLRLDIRRTAEKIKNNNDEIIGVKSN 253

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           +K+VK+K+++PFK    DI+YG+GIS  GE++DL +  +++ ++GAW+++K +   QG+E
Sbjct: 254 IKIVKSKVSTPFKTATVDIIYGKGISKIGEILDLAIDLNLIKRNGAWYNYKNENFAQGKE 313

Query: 312 NSKIFLRENIEIAENIESLLRQNAGL 337
           N+KIFL+ N+EI   +E  +R+   +
Sbjct: 314 NAKIFLQNNLEIYNFLEEQIRKKYKI 339


>gi|156067145|gb|ABR12794.2| recombinase A [Photobacterium phosphoreum]
          Length = 278

 Score =  298 bits (762), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 191/280 (68%), Positives = 235/280 (83%), Gaps = 2/280 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGP
Sbjct: 1   LAAALGQIEKQFGKGSIMKLGDNKTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKT L L  I+ +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTKLTLEVISAAQKQGKTCAFIDAEHALDPIYAQKLGVDINELLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 IVDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           KNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +V+K+
Sbjct: 239 KNKIAAPFKQAETQILYGQGFNRNGELIDLGVKNKLVEKA 278


>gi|212274305|ref|NP_001130273.1| hypothetical protein LOC100191367 [Zea mays]
 gi|194688718|gb|ACF78443.1| unknown [Zea mays]
          Length = 430

 Score =  298 bits (762), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 175/354 (49%), Positives = 244/354 (68%), Gaps = 5/354 (1%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E ++  K  AL  A+ QI   +GKGAIM LG +      + VVS+GS  LD+ALG GG P
Sbjct: 61  EESMSKKDLALHQAIDQITSAFGKGAIMWLG-RSQGLRDVPVVSTGSFALDMALGTGGLP 119

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR++E+YGPE+SGKTTLALH IA++QK GG CAFVDAEHALD   A  +GVD  NLL+S
Sbjct: 120 KGRVIEVYGPEASGKTTLALHVIAEAQKNGGYCAFVDAEHALDPALAESIGVDTNNLLVS 179

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD  EQAL + D L+RSG+VD++V+DSVAAL P+ E++G+MG++   +QARLMSQALRK
Sbjct: 180 QPDCAEQALSLVDTLIRSGSVDVVVVDSVAALVPKTELDGEMGDAHVALQARLMSQALRK 239

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           L+ S+S S+ +L+FINQ+R K+         E T+GGNALKFY+SVRL+IRR+G +K+ +
Sbjct: 240 LSHSLSLSQTVLLFINQIRAKVATFGFGGPTEVTSGGNALKFYASVRLNIRRIGFLKEGE 299

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS-GAWFSFK 302
              G+Q  VK+VKNK A PFK  +F++ +G+GI    EL +LG+K  ++ K+ GA++ F 
Sbjct: 300 ETIGSQVAVKIVKNKHAPPFKTAQFELEFGKGICRSSELFELGLKHKLIQKTGGAYYRFN 359

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
                +G+ N K +L EN  +A ++E+ LR+  G  A    +    +  D  ++
Sbjct: 360 DMSF-KGKNNLKSYLTENKSVANDLETKLRRLMGTEAPKEQEAEDSSPSDLPEE 412


>gi|293332481|ref|NP_001170211.1| hypothetical protein LOC100384162 [Zea mays]
 gi|224034357|gb|ACN36254.1| unknown [Zea mays]
          Length = 425

 Score =  298 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 184/371 (49%), Positives = 252/371 (67%), Gaps = 15/371 (4%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N+  K  AL  A+ QI   +GKGAIM LG +      + VVS+GSL LD+ALG GG P
Sbjct: 56  EENMSKKDLALHQAIDQITSAFGKGAIMWLG-RSQGHRDVPVVSTGSLDLDMALGTGGLP 114

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR+VE+YGPE+SGKTTLALH IA++QK GG CAFVDAEHALD   A  +GVD  NLL+S
Sbjct: 115 KGRVVEVYGPEASGKTTLALHVIAEAQKNGGYCAFVDAEHALDPALAESIGVDTNNLLLS 174

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD  EQAL + D L+RSG+VD++V+DSVAAL P+ E++G+MG++   +QARLMSQALRK
Sbjct: 175 QPDCAEQALSLVDTLIRSGSVDVVVVDSVAALVPKTELDGEMGDAHIALQARLMSQALRK 234

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           L+ S+S S+ IL+FINQ+R K+         E T+GGNALKFY+SVRL+IRR+G +K  +
Sbjct: 235 LSHSLSLSQTILLFINQIRAKVATFGFGGPTEVTSGGNALKFYASVRLNIRRIGLVKKGE 294

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS-GAWFSFK 302
              G+Q  VK+VKNK A PFK  +F++ +G+GI    EL +LG+K  ++ KS G+++SF 
Sbjct: 295 ETIGSQIAVKIVKNKHAPPFKTAQFELEFGKGICRSSELFELGLKHKLIRKSGGSYYSFN 354

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLR----------QNAGLVADSLLQEPAINTKD 352
           G +   G+ N K +L EN  +A ++E  L+          Q AG  + S   E ++  + 
Sbjct: 355 G-KAFNGKSNLKSYLTENKSVANDLEMELKRLMGTDASKEQEAGDSSQSDFPEESVTPEA 413

Query: 353 DADKDDTDNVE 363
            +++D    +E
Sbjct: 414 SSEEDLGAIIE 424


>gi|297613920|gb|ADI48367.1| recA [Burkholderia fungorum]
          Length = 271

 Score =  298 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 196/271 (72%), Positives = 239/271 (88%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
             E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGT AF
Sbjct: 1   AVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAF 60

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           +DAEHALD  YA KLGV++ +LL+SQPDTG QALEI D LVRSG++D+IVIDSVAAL P+
Sbjct: 61  IDAEHALDIQYAGKLGVNVSDLLVSQPDTGGQALEIADALVRSGSIDMIVIDSVAALVPK 120

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
           AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGG
Sbjct: 121 AEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGG 180

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           NALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A PF++  FDI+YGEGIS  G
Sbjct: 181 NALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPPFREAIFDILYGEGISRQG 240

Query: 281 ELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           E+IDLGV+A IVDK+GAW+S+ G+R+GQG++
Sbjct: 241 EIIDLGVQAKIVDKAGAWYSYNGERIGQGKD 271


>gi|308190099|ref|YP_003923030.1| recombinase A [Mycoplasma fermentans JER]
 gi|307624841|gb|ADN69146.1| recombinase A [Mycoplasma fermentans JER]
          Length = 339

 Score =  298 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 170/327 (51%), Positives = 243/327 (74%), Gaps = 1/327 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K + I +K K L+ AL +I + +G  AIM  G Q  I E IE   SGS  LD ALGIGG+
Sbjct: 4   KNIEIKNKDKELKEALEEITKKFGSEAIMLFG-QNEIEEKIETFPSGSYLLDNALGIGGY 62

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EIYGPESSGKTTL LH IA+ QK GG  A++DAEH+LD  YAR LG++L NL++
Sbjct: 63  PKGRIIEIYGPESSGKTTLCLHAIAEIQKQGGIAAYIDAEHSLDPNYARNLGINLDNLIL 122

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD+GEQAL+I D+L +SG++D+IV+DSVAAL P  E+ G M +S  G  ARLM++ LR
Sbjct: 123 SQPDSGEQALQIVDILAKSGSIDLIVVDSVAALVPEVELNGTMSDSSVGALARLMAKGLR 182

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           K+T +++++K  ++F+NQ+R KIGV+FG+PETTTGG ALKF+SSVR+++R+  SI +   
Sbjct: 183 KITGNLNKNKTAIIFVNQIREKIGVLFGNPETTTGGRALKFFSSVRIEVRKTTSIVEGKD 242

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           ITGN+ ++K+VKNK+A+P+K    +I++ +GI    ELI+L  +A++++K GAWF+++ +
Sbjct: 243 ITGNEVKIKIVKNKLAAPYKSFTTEIIFSKGIDKLNELINLATEANVIEKKGAWFAYQEK 302

Query: 305 RLGQGRENSKIFLRENIEIAENIESLL 331
            + QG++  K  L EN E  + IE+ +
Sbjct: 303 NIAQGKKALKDILLENPEFKKEIENQI 329


>gi|115372449|ref|ZP_01459758.1| RecA protein [Stigmatella aurantiaca DW4/3-1]
 gi|115370662|gb|EAU69588.1| RecA protein [Stigmatella aurantiaca DW4/3-1]
          Length = 316

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 189/299 (63%), Positives = 246/299 (82%), Gaps = 1/299 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M LG +    + + V++SGS+ LD ALG+GG+P+GR+VE++G ESSGKT+L+LH IAQ Q
Sbjct: 1   MALGGEAQE-QKVAVIASGSVSLDRALGVGGYPRGRVVELFGNESSGKTSLSLHAIAQVQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
            +GG  AF+DAEHALD  YARKLGV ++ LLISQPDTGEQALEIT+ LVRSGAVD+IV+D
Sbjct: 60  ASGGVAAFIDAEHALDVNYARKLGVRVEELLISQPDTGEQALEITEQLVRSGAVDLIVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL PRAEIEG+MG++  G+QARLMSQALRKLT ++SRS   ++FINQ+RMKIGVMFG
Sbjct: 120 SVAALVPRAEIEGEMGDAHMGVQARLMSQALRKLTGAVSRSGTCIIFINQIRMKIGVMFG 179

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETTTGGNALKFYSSVRL+IRR G++K+ +SI G + RVKVVKNK+A PF++ EFD++Y
Sbjct: 180 NPETTTGGNALKFYSSVRLEIRRTGNLKEGESIIGTRARVKVVKNKLAPPFQEAEFDLLY 239

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLL 331
           G GI   GE++DLGV+   ++KSG+ FS +G+R+GQGRE +  +LRE+ +  E + + L
Sbjct: 240 GVGIHRAGEVLDLGVQLGFIEKSGSHFSLRGERIGQGRERATDWLREHPQALEALATEL 298


>gi|319777397|ref|YP_004137048.1| protein reca [Mycoplasma fermentans M64]
 gi|318038472|gb|ADV34671.1| Protein RecA [Mycoplasma fermentans M64]
          Length = 339

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 169/327 (51%), Positives = 243/327 (74%), Gaps = 1/327 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K + I +K K L+ AL +I + +G  AIM  G Q  I E IE   SGS  LD ALGIGG+
Sbjct: 4   KNIEIKNKDKELKEALEEITKKFGSEAIMLFG-QNEIEEKIETFPSGSYLLDNALGIGGY 62

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EIYGPESSGKTTL LH IA+ QK GG  A++DAEH+LD  YAR LG++L NL++
Sbjct: 63  PKGRIIEIYGPESSGKTTLCLHAIAEIQKQGGIAAYIDAEHSLDPNYARNLGINLDNLIL 122

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD+GEQAL+I D+L +SG++D+IV+DSVAAL P  E+ G M +S  G  ARLM++ LR
Sbjct: 123 SQPDSGEQALQIVDILAKSGSIDLIVVDSVAALVPEVELNGTMSDSSVGALARLMAKGLR 182

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           K+T +++++K  ++F+NQ+R KIGV+FG+PETTTGG A+KF+SSVR+++R+  SI +   
Sbjct: 183 KITGNLNKNKTAIIFVNQIREKIGVLFGNPETTTGGRAIKFFSSVRIEVRKTTSIVEGKD 242

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           ITGN+ ++K+VKNK+A+P+K    +I++ +GI    ELI+L  +A++++K GAWF+++ +
Sbjct: 243 ITGNEVKIKIVKNKLAAPYKSFTTEIIFSKGIDKLNELINLATEANVIEKKGAWFAYQEK 302

Query: 305 RLGQGRENSKIFLRENIEIAENIESLL 331
            + QG++  K  L EN E  + IE+ +
Sbjct: 303 NIAQGKKALKDILLENPEFKKEIENQI 329


>gi|23321297|gb|AAN23143.1| RecA protein [Vibrio cholerae]
          Length = 289

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 181/275 (65%), Positives = 231/275 (84%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV+
Sbjct: 1   LGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVN 60

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR+
Sbjct: 61  IDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARM 120

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           +SQA+RKLT +  +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+
Sbjct: 121 LSQAMRKLTGNSKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGA 180

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW
Sbjct: 181 IKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAW 240

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           +S+ G ++GQG+ N+  +L+EN EIA+ ++  LR+
Sbjct: 241 YSYNGDKIGQGKANACKYLKENPEIAKTLDKKLRE 275


>gi|238810302|dbj|BAH70092.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 341

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 169/327 (51%), Positives = 243/327 (74%), Gaps = 1/327 (0%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K + I +K K L+ AL +I + +G  AIM  G Q  I E IE   SGS  LD ALGIGG+
Sbjct: 6   KNIEIKNKDKELKEALEEITKKFGSEAIMLFG-QNEIEEKIETFPSGSYLLDNALGIGGY 64

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EIYGPESSGKTTL LH IA+ QK GG  A++DAEH+LD  YAR LG++L NL++
Sbjct: 65  PKGRIIEIYGPESSGKTTLCLHAIAEIQKQGGIAAYIDAEHSLDPNYARNLGINLDNLIL 124

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD+GEQAL+I D+L +SG++D+IV+DSVAAL P  E+ G M +S  G  ARLM++ LR
Sbjct: 125 SQPDSGEQALQIVDILAKSGSIDLIVVDSVAALVPEVELNGTMSDSSVGALARLMAKGLR 184

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           K+T +++++K  ++F+NQ+R KIGV+FG+PETTTGG A+KF+SSVR+++R+  SI +   
Sbjct: 185 KITGNLNKNKTAIIFVNQIREKIGVLFGNPETTTGGRAIKFFSSVRIEVRKTTSIVEGKD 244

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           ITGN+ ++K+VKNK+A+P+K    +I++ +GI    ELI+L  +A++++K GAWF+++ +
Sbjct: 245 ITGNEVKIKIVKNKLAAPYKSFTTEIIFSKGIDKLNELINLATEANVIEKKGAWFAYQEK 304

Query: 305 RLGQGRENSKIFLRENIEIAENIESLL 331
            + QG++  K  L EN E  + IE+ +
Sbjct: 305 NIAQGKKALKDILLENPEFKKEIENQI 331


>gi|242059571|ref|XP_002458931.1| hypothetical protein SORBIDRAFT_03g042890 [Sorghum bicolor]
 gi|241930906|gb|EES04051.1| hypothetical protein SORBIDRAFT_03g042890 [Sorghum bicolor]
          Length = 427

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 178/354 (50%), Positives = 242/354 (68%), Gaps = 5/354 (1%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N+  K  AL  A+ QI   +GKGAIM LG +      + VVS+GS  LD+ALG GG P
Sbjct: 58  EENMSKKDLALHQAIDQITSAFGKGAIMWLG-RSQGHRDVPVVSTGSFALDMALGTGGLP 116

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR++E+YGPE+SGKTTLALH IA++QK GG CAFVDAEHALD   A K+GVD  NLL+S
Sbjct: 117 KGRVIEVYGPEASGKTTLALHVIAEAQKNGGYCAFVDAEHALDPALAEKIGVDTNNLLLS 176

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD  EQAL + D L+RSG+VD++V+DSVAAL P+ E++G+MG++   +QARLMSQALRK
Sbjct: 177 QPDCAEQALSLVDTLIRSGSVDVVVVDSVAALVPKTELDGEMGDAHVALQARLMSQALRK 236

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           L+ S+S S+ IL+FINQ+R K+         E T+GGNALKFY+SVRL+IRR+G +K  +
Sbjct: 237 LSHSLSLSQTILLFINQIRAKVATFGFGGPTEVTSGGNALKFYASVRLNIRRIGLVKKGE 296

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS-GAWFSFK 302
              G+Q  VK+VKNK A PFK  +F++ +G+GI    EL +LG+K  ++ K+ GA++SF 
Sbjct: 297 ETIGSQIAVKIVKNKHAPPFKTAQFELEFGKGICRSSELFELGLKHKLIKKTGGAFYSFN 356

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
                 G+ N K +L EN  +A ++E  LR+     A    +    +  D  ++
Sbjct: 357 DMSFC-GKNNLKSYLDENKSVANDLEMELRRLMATEAPKEQEAEDSSPSDLPEE 409


>gi|70904917|gb|AAZ14036.1| RecA [Burkholderia ambifaria]
          Length = 276

 Score =  297 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 200/275 (72%), Positives = 242/275 (88%), Gaps = 1/275 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPES
Sbjct: 3   AALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPES 61

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEIT
Sbjct: 62  SGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEIT 121

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C++
Sbjct: 122 DALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLV 181

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKN
Sbjct: 182 IFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKN 241

Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           K++ PF++  FDI+YGEGIS  GE+IDLGV+A IV
Sbjct: 242 KVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIV 276


>gi|159485886|ref|XP_001700975.1| chloroplast RecA recombination protein [Chlamydomonas reinhardtii]
 gi|158281474|gb|EDP07229.1| chloroplast RecA recombination protein [Chlamydomonas reinhardtii]
          Length = 415

 Score =  297 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 176/332 (53%), Positives = 231/332 (69%), Gaps = 3/332 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K+K     + +I R +G G+IM+L    S+   IE   SGSL LD ALG GG+P+GRI+E
Sbjct: 62  KAKLFNETVDRITRRFGDGSIMRLSD--SVTANIETFPSGSLTLDAALG-GGYPRGRIIE 118

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPE+SGKTTLA+H  A+ Q+ GGT A++D EHA D  YA +LG++L N   +QP TGE
Sbjct: 119 VYGPEASGKTTLAMHACAEIQRLGGTVAYIDVEHAFDRTYAERLGINLNNFWYAQPMTGE 178

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           +ALE+ D L RS   D++VIDSVAAL PRAE+EGD+G    G QARL+SQALRKL++S S
Sbjct: 179 EALEVMDELCRSNVCDLVVIDSVAALVPRAELEGDIGSVQIGSQARLLSQALRKLSASAS 238

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +SK  L FINQ+R KIGVMFG+PETT+GGNALK+YSSVR+DIR+  ++ + D    N+ R
Sbjct: 239 KSKTTLFFINQLRNKIGVMFGNPETTSGGNALKYYSSVRIDIRKKETLSESDQAYANRVR 298

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
            KVVKNK+ASP K+  F+I YG GI F G LID   +  ++ + GA++ +  QRLGQGRE
Sbjct: 299 AKVVKNKVASPHKEALFEIYYGRGIDFLGGLIDTAERLKVLTRRGAFYYYGDQRLGQGRE 358

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLL 343
                LRE+ E    IE+ +R       D+ L
Sbjct: 359 KVLAALREDAERTAAIEAAVRDVLRANPDAAL 390


>gi|195638478|gb|ACG38707.1| DNA repair protein recA [Zea mays]
          Length = 430

 Score =  297 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 174/354 (49%), Positives = 243/354 (68%), Gaps = 5/354 (1%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E ++  K  AL  A+ QI   +GKGAIM LG +      + VVS+GS  LD+ALG GG P
Sbjct: 61  EESMSKKDLALHQAIDQITSAFGKGAIMWLG-RSQGLRDVPVVSTGSFALDMALGTGGLP 119

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR++E+YGPE+SGKTTLALH IA++QK GG CAFVDAEHALD   A  + VD  NLL+S
Sbjct: 120 KGRVIEVYGPEASGKTTLALHVIAEAQKNGGYCAFVDAEHALDPALAESIXVDTNNLLVS 179

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD  EQAL + D L+RSG+VD++V+DSVAAL P+ E++G+MG++   +QARLMSQALRK
Sbjct: 180 QPDCAEQALSLVDTLIRSGSVDVVVVDSVAALVPKTELDGEMGDAHVALQARLMSQALRK 239

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           L+ S+S S+ +L+FINQ+R K+         E T+GGNALKFY+SVRL+IRR+G +K+ +
Sbjct: 240 LSHSLSLSQTVLLFINQIRAKVATFGFGGPTEVTSGGNALKFYASVRLNIRRIGFLKEGE 299

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS-GAWFSFK 302
              G+Q  VK+VKNK A PFK  +F++ +G+GI    EL +LG+K  ++ K+ GA++ F 
Sbjct: 300 ETIGSQVAVKIVKNKHAPPFKTAQFELEFGKGICRSSELFELGLKHKLIQKTGGAYYRFN 359

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
                +G+ N K +L EN  +A ++E+ LR+  G  A    +    +  D  ++
Sbjct: 360 DMSF-KGKNNLKSYLTENKSVANDLETKLRRLMGTEAPKEQEAEDSSPSDLPEE 412


>gi|170516899|gb|ACB15385.1| RecA [Bifidobacterium longum]
          Length = 267

 Score =  297 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 180/267 (67%), Positives = 224/267 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +EV+ +GSL LD+ALGIGG PKGRIVEIYGPESSGKTTLALH +A +QK GG  A++DA
Sbjct: 1   NVEVIPTGSLALDMALGIGGLPKGRIVEIYGPESSGKTTLALHVVANAQKKGGVAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD  YARKLGVD  +L++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEI
Sbjct: 61  EHALDPAYARKLGVDTDSLIVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRK+T +++++    +FINQ+R KIGV FG+PETTTGG AL
Sbjct: 121 EGEMGDSHVGLQARLMSQALRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+SVRLDIRR+ ++K+ D   GN+TRVKVVKNKMA PFK  EFD++YGEGIS  G +I
Sbjct: 181 KFYASVRLDIRRIQTLKNGDEAVGNRTRVKVVKNKMAPPFKSAEFDMLYGEGISREGSVI 240

Query: 284 DLGVKASIVDKSGAWFSFKGQRLGQGR 310
           D+  +  +V KSG+WF+++G +LGQGR
Sbjct: 241 DMAQQVGVVKKSGSWFTYEGDQLGQGR 267


>gi|332178112|gb|AEE13801.1| Protein recA [Thermodesulfobium narugense DSM 14796]
          Length = 343

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 167/341 (48%), Positives = 241/341 (70%), Gaps = 5/341 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           +  D+ +++++A+SQI+R +GKG+IM+LG   +    ++V+SSGS+ +DI  GIGG P+G
Sbjct: 3   DKTDQERSIDSAISQIERRFGKGSIMRLGE--AEPPKVDVISSGSMAIDIISGIGGLPRG 60

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RI+EIYGPE SGKTT+ALH IA++QK GG  AF+DAEHALD  YA ++GV+LKNLLISQP
Sbjct: 61  RIIEIYGPEGSGKTTVALHAIAEAQKAGGVAAFIDAEHALDVYYAERIGVNLKNLLISQP 120

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
            TGE+ALEI D LVRS A+ I+VIDSVAAL P++E+EG+MG+    +QARLMSQALRKLT
Sbjct: 121 TTGEEALEIADTLVRSNAIAIVVIDSVAALIPKSELEGEMGDVTIALQARLMSQALRKLT 180

Query: 188 SSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDK-DS 244
            ++++SK   VFINQ+R K+   +     E T GG ALKFY+S+R+++RR  +IK     
Sbjct: 181 GTVNKSKTACVFINQLREKVSTGYTSGPIEVTPGGRALKFYASMRIEVRRGEAIKSSVGE 240

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           I G + ++K+VKNK+A PFK+ E  ++YG+GI    +L +  +    + +SG+++ FK  
Sbjct: 241 IIGAKMKIKIVKNKLAPPFKETELILIYGQGIDKTTDLFETALNLGFITRSGSFYYFKDL 300

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           RLGQG++ S+  L EN ++   +   +R        +   E
Sbjct: 301 RLGQGKDASRALLDENADLRNELMLAVRTYFEPDTKAATDE 341


>gi|2500087|sp|Q59592|RECA_NEIAN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|1354909|gb|AAB49190.1| RecA [Neisseria animalis]
          Length = 274

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 188/275 (68%), Positives = 230/275 (83%), Gaps = 1/275 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +I+ +       E +EV+S+GSLGLD+ALG+GG P+GR+VEI+GPESSGKTTL L +IAQ
Sbjct: 1   SIINM-DGSHKQEDLEVISTGSLGLDLALGVGGLPRGRVVEIFGPESSGKTTLCLESIAQ 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GG CAF+DAEHA D IYARKLGV ++ L +SQPDTGEQALEI D LVRSG VD++V
Sbjct: 60  CQKNGGVCAFIDAEHAFDPIYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGVDMVV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  I R+  ++VFINQ+RMKIGV+
Sbjct: 120 VDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGHIKRTNTLVVFINQIRMKIGVV 179

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           +GSPETTTGGNALKFY+SVRLDIRR G IK  D I GN+T+VKV+KNK+A PF+Q EFDI
Sbjct: 180 YGSPETTTGGNALKFYASVRLDIRRAGQIKKGDEILGNETKVKVIKNKVAPPFRQAEFDI 239

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           +YGEGIS+ GELID+GVK  I+DKSGAW+S+   +
Sbjct: 240 LYGEGISWEGELIDIGVKHDIIDKSGAWYSYNDTK 274


>gi|225444891|ref|XP_002279464.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 432

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 182/370 (49%), Positives = 244/370 (65%), Gaps = 10/370 (2%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
               E N+  K  AL  AL QI   +GKG+IM LG +    + + VVS+GS  LDI LGI
Sbjct: 59  SDSNEENLSKKELALRQALDQITTSFGKGSIMWLG-RSVSSKHVPVVSTGSFALDIVLGI 117

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG PKGR+VEIYGPE+SGKTTLALH IA++QK GG C FVDAEHALD   A  +GV+ +N
Sbjct: 118 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDPALAEAIGVNTQN 177

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPD GEQAL + D L+RSG+VD++V+DSVAAL P+ E++G+MG++   MQARLMSQ
Sbjct: 178 LLLSQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ 237

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGV---MFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           ALRKL+ S+S S+ IL+FINQ+R K+       G  E T GGNALKFY+SVRL+I+R+G 
Sbjct: 238 ALRKLSHSLSLSQTILIFINQVRAKLSTFGGFGGPTEVTCGGNALKFYASVRLNIKRIGL 297

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK-SGA 297
           +K  +   G+Q  VKVVKNK A PFK  +F++ +G+GI    E+++LG K   + K  GA
Sbjct: 298 VKKGEETIGSQVLVKVVKNKHAPPFKTAQFELEFGKGICRESEIVELGCKHKFIIKGGGA 357

Query: 298 WFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
            +S+ GQ   +G++  K FL +N    E +   LR+      +   +  A    +D  + 
Sbjct: 358 MYSYNGQSF-RGKDAIKQFLSQNESEREELMRKLREKLVGETNKEKELEAEAVDEDIAEG 416

Query: 358 ----DTDNVE 363
               DT + E
Sbjct: 417 TVPPDTTDEE 426


>gi|306517921|emb|CBL53384.1| recombination-repair protein [Photobacterium angustum]
          Length = 271

 Score =  296 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 190/273 (69%), Positives = 233/273 (85%), Gaps = 2/273 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L T
Sbjct: 1   GKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLET 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQRKGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEICDALARSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 LIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKQAE 238

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
             I+YG+G +  GELIDLGVK  +V+K+GAW+S
Sbjct: 239 TQILYGQGFNRNGELIDLGVKHKLVEKAGAWYS 271


>gi|148910572|gb|ABR18358.1| unknown [Picea sitchensis]
          Length = 454

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 182/358 (50%), Positives = 247/358 (68%), Gaps = 7/358 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
            + +K  AL+AALSQI   +GK  +M LG +      + V+S+GSL LD+ALGIGGFPKG
Sbjct: 91  KLSEKEAALQAALSQIGSTFGKETVMWLG-RFLGRRNVPVISTGSLNLDVALGIGGFPKG 149

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R+VEIYGPE+SGKTTL LHTIA++Q+ GG C F+DAEHALD   A  +GV  +NLL++QP
Sbjct: 150 RMVEIYGPEASGKTTLGLHTIAEAQRNGGYCVFIDAEHALDPSLAEAIGVKTENLLLAQP 209

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           D GEQAL + D  +RSG+VD+IV+DSVAAL P++E+EG+MG++   +QARLMSQALRKLT
Sbjct: 210 DCGEQALSLVDTFIRSGSVDVIVVDSVAALVPKSELEGEMGDAHMAVQARLMSQALRKLT 269

Query: 188 SSISRSKCILVFINQMRMKIGV---MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
            S+SRS+ +L+FINQ+R K+       G  E T GGNALKFY+S+RL+IRR G +K  D 
Sbjct: 270 PSLSRSQTLLIFINQVRSKLSSFGGFGGPSEVTAGGNALKFYASIRLNIRRTGLLKRGDE 329

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
             G+Q  VKV KNK+A PFK  EF+I +G GIS   E++DLG K  ++ KSG  +   G+
Sbjct: 330 TFGSQILVKVAKNKLAPPFKTAEFEIEFGRGISCEAEILDLGCKHDMITKSGHHYKLNGE 389

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
               G+E +K +LREN +I   + S L++   L+ D   ++       D   ++ D +
Sbjct: 390 TF-NGKEKAKSYLRENDQIRYELMSKLKEK--LLGDIGQEDVLEKDVSDTFSENNDEI 444


>gi|119952934|ref|YP_945143.1| recombinase A [Borrelia turicatae 91E135]
 gi|254790422|sp|A1QYT1|RECA_BORT9 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|119861705|gb|AAX17473.1| RecA protein [Borrelia turicatae 91E135]
          Length = 363

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 185/349 (53%), Positives = 262/349 (75%), Gaps = 5/349 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +++ KA+E A  QI++ +GKG+++++G    + +GIE +SSGS+ LD A+G+GG+P+GRI
Sbjct: 16  LNREKAIELARIQIEKDFGKGSLIKMGE-SPVGKGIESISSGSILLDEAIGVGGYPRGRI 74

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EI+GPESSGKTTL L  I++ QK GG  AF+DAEHALD +YA+ LGV++  L +SQPDT
Sbjct: 75  IEIFGPESSGKTTLTLQAISEVQKNGGIAAFIDAEHALDPVYAKALGVNIDELWLSQPDT 134

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI + L+RSG VD+IV+DSVAALTP+AEI+G+MG+   G+QARLMS+ALRK+T  
Sbjct: 135 GEQALEIAEYLIRSGGVDLIVVDSVAALTPQAEIDGEMGDCQIGLQARLMSKALRKITGI 194

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--DSITG 247
           +S+SK  ++FINQ+RMKIGVMFG+PETTTGGNALKFYSS+RL++R++  +     D + G
Sbjct: 195 LSKSKTCIMFINQLRMKIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTGSSADDVVG 254

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+ RVKVVKNK+A PF+++E  I +G+GIS    ++D  +K  ++ K G+W+S    +LG
Sbjct: 255 NKVRVKVVKNKVAPPFRKIELVIYFGKGISREASILDASIKYKLIQKIGSWYSIGDDKLG 314

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNA--GLVADSLLQEPAINTKDDA 354
           QGRE++ I+L +  E+   +E  LR+    GL  DS+   P    KD  
Sbjct: 315 QGRESAIIYLIKEKELTNELEIKLRKIIFEGLSPDSIEIGPPNVKKDKE 363


>gi|297738654|emb|CBI27899.3| unnamed protein product [Vitis vinifera]
          Length = 421

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 182/370 (49%), Positives = 244/370 (65%), Gaps = 10/370 (2%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
               E N+  K  AL  AL QI   +GKG+IM LG +    + + VVS+GS  LDI LGI
Sbjct: 48  SDSNEENLSKKELALRQALDQITTSFGKGSIMWLG-RSVSSKHVPVVSTGSFALDIVLGI 106

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG PKGR+VEIYGPE+SGKTTLALH IA++QK GG C FVDAEHALD   A  +GV+ +N
Sbjct: 107 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDPALAEAIGVNTQN 166

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPD GEQAL + D L+RSG+VD++V+DSVAAL P+ E++G+MG++   MQARLMSQ
Sbjct: 167 LLLSQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ 226

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGV---MFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           ALRKL+ S+S S+ IL+FINQ+R K+       G  E T GGNALKFY+SVRL+I+R+G 
Sbjct: 227 ALRKLSHSLSLSQTILIFINQVRAKLSTFGGFGGPTEVTCGGNALKFYASVRLNIKRIGL 286

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK-SGA 297
           +K  +   G+Q  VKVVKNK A PFK  +F++ +G+GI    E+++LG K   + K  GA
Sbjct: 287 VKKGEETIGSQVLVKVVKNKHAPPFKTAQFELEFGKGICRESEIVELGCKHKFIIKGGGA 346

Query: 298 WFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
            +S+ GQ   +G++  K FL +N    E +   LR+      +   +  A    +D  + 
Sbjct: 347 MYSYNGQSF-RGKDAIKQFLSQNESEREELMRKLREKLVGETNKEKELEAEAVDEDIAEG 405

Query: 358 ----DTDNVE 363
               DT + E
Sbjct: 406 TVPPDTTDEE 415


>gi|255520430|ref|ZP_05387667.1| recombinase A [Listeria monocytogenes FSL J1-175]
          Length = 277

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 176/278 (63%), Positives = 224/278 (80%), Gaps = 2/278 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GR
Sbjct: 1   MNDRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPD
Sbjct: 59  IIEVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            I++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR   +K    + GN
Sbjct: 179 VINKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGN 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
           +T++KVVKNK+A PF+  E DIMYGEGIS  GEL+D+ 
Sbjct: 239 KTKIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMA 276


>gi|189308775|gb|ACD87089.1| RecA [Vibrio sp. PP-203]
          Length = 275

 Score =  295 bits (755), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 185/275 (67%), Positives = 232/275 (84%), Gaps = 2/275 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  I
Sbjct: 3   KGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELI 60

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D+
Sbjct: 61  AAAQRVGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDV 120

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG
Sbjct: 121 MVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIG 180

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR GSIKD D I GN+TR+KVVKNK+A+PFKQ E 
Sbjct: 181 VMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEIVGNETRIKVVKNKIAAPFKQAET 240

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            I+YG+G +  GELIDLGVK  +++K+GA +S+ G
Sbjct: 241 QILYGQGFNREGELIDLGVKNKLIEKAGARYSYNG 275


>gi|306517923|emb|CBL53385.1| recombination-repair protein [Photobacterium halotolerans]
          Length = 272

 Score =  295 bits (755), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 188/274 (68%), Positives = 234/274 (85%), Gaps = 2/274 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L T
Sbjct: 1   GKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLET 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQRKGKTCAFIDAEHALDPIYAKKLGVDIDQLLVSQPDTGEQALEICDALARSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 MIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ +
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKQAD 238

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
             I+YG+G +  GELIDLGVK  +++K+GAW+S+
Sbjct: 239 TQILYGQGFNRNGELIDLGVKQKLIEKAGAWYSY 272


>gi|110264719|gb|ABG56935.1| recA protein [Vibrio harveyi]
          Length = 274

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 184/276 (66%), Positives = 231/276 (83%), Gaps = 2/276 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGP
Sbjct: 1   LAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 119 ICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVV
Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVV 238

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASI 291
           KNK+A+PFK+    IMYG+G +  GELIDLGVK  +
Sbjct: 239 KNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKL 274


>gi|224122482|ref|XP_002330492.1| predicted protein [Populus trichocarpa]
 gi|222872426|gb|EEF09557.1| predicted protein [Populus trichocarpa]
          Length = 357

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 180/352 (51%), Positives = 247/352 (70%), Gaps = 6/352 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
             K  AL+ AL QI   +GKG+IM  G +    + + VVS+GS  LDIALG GGFPKGR+
Sbjct: 1   SKKDLALQQALDQITSQFGKGSIMWFG-RSEAPKNVPVVSTGSFALDIALGCGGFPKGRV 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEI+GPE+SGKTTLALH IA++QK GG C F+DAEHALDS  A+ +GV+ +NLL+SQPD 
Sbjct: 60  VEIFGPEASGKTTLALHVIAEAQKQGGYCVFMDAEHALDSSLAKAIGVNTENLLLSQPDC 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQAL + D L+RSG+VD++V+DSVAAL P++E++G+MG++   MQARLMSQALRKL+ S
Sbjct: 120 GEQALSLVDTLIRSGSVDVVVVDSVAALVPKSELDGEMGDAHMAMQARLMSQALRKLSHS 179

Query: 190 ISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           +S+S+ +L+FINQ+R K+         E T GGNALKFY+SVRL+IRRVG IK  +  TG
Sbjct: 180 LSQSQTVLIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIRRVGFIKKGEETTG 239

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
            Q +VK+ KNK+A PFK V+F++ +G+GIS   E+I+L VK   + K+GA++   G++  
Sbjct: 240 TQVQVKIAKNKLAPPFKTVQFELEFGKGISRESEIIELAVKHKFIKKNGAFYDCNGRK-Y 298

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
            G+E  + FL  N ++ E +   LR+   L+     QE    T D     ++
Sbjct: 299 HGKEALREFLAHNDDVQEELMMKLREK--LLEAETDQELKDETTDGEPTQES 348


>gi|189308777|gb|ACD87090.1| RecA [Vibrio sp. PP-200]
          Length = 273

 Score =  294 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 185/275 (67%), Positives = 232/275 (84%), Gaps = 2/275 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  I
Sbjct: 1   KGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D+
Sbjct: 59  AAAQRVGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG
Sbjct: 119 MVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR GSIKD D I GN+TR+KVVKNK+A+PFKQ E 
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEIVGNETRIKVVKNKIAAPFKQAET 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            I+YG+G +  GELIDLGVK  +++K+GA +S+ G
Sbjct: 239 QILYGQGFNREGELIDLGVKNKLIEKAGARYSYNG 273


>gi|264670202|gb|ACY72352.1| RecA [Neisseria sp. SMC-A9199]
          Length = 265

 Score =  294 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 187/265 (70%), Positives = 225/265 (84%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
                 E ++V+S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKTTL L  IAQ QK GG
Sbjct: 1   DGSQQEENLDVISTGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAIAQCQKNGG 60

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
            CAF+DAEHA D +YARKLGV ++ L +SQPDTGEQALEI D LVRSG VD++V+DSVAA
Sbjct: 61  ICAFIDAEHAFDPVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGVDMVVVDSVAA 120

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPET 216
           L P+AEIEG+MG+S  G+QARLMSQALRKLT  I R+  ++VFINQ+RMKIGVMFGSPET
Sbjct: 121 LVPKAEIEGEMGDSHVGLQARLMSQALRKLTGHIKRTNTLVVFINQIRMKIGVMFGSPET 180

Query: 217 TTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276
           TTGGNALKFY+SVRLDIRR G IK  D + GN+TRVKV+KNK+A PF+Q EFDI+YGEG+
Sbjct: 181 TTGGNALKFYASVRLDIRRTGQIKKGDDVIGNETRVKVIKNKVAPPFRQAEFDILYGEGV 240

Query: 277 SFFGELIDLGVKASIVDKSGAWFSF 301
           S+ GELID+GVK +IV+KSGAW+S+
Sbjct: 241 SWEGELIDIGVKNNIVEKSGAWYSY 265


>gi|161788610|emb|CAP18005.2| DNA recombinase [Burkholderia contaminans]
          Length = 283

 Score =  294 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 194/272 (71%), Positives = 238/272 (87%)

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQP
Sbjct: 1   RVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQP 60

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT
Sbjct: 61  DTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLT 120

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + G
Sbjct: 121 GTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIG 180

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++G
Sbjct: 181 NETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIG 240

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           QG++N++ FLREN EIA  IE+ +R++ G+V 
Sbjct: 241 QGKDNAREFLRENPEIAREIENRIRESLGVVT 272


>gi|306517919|emb|CBL53383.1| recombination-repair protein [Photobacterium sp. CECT 7614]
          Length = 272

 Score =  293 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 186/274 (67%), Positives = 232/274 (84%), Gaps = 2/274 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDQLLVSQPDTGEQALEIADALARSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           I+V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 ILVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ +
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKQAD 238

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
             I+YG G +  GEL+DLGVK  +++K+GAW+S+
Sbjct: 239 TQILYGLGFNRQGELVDLGVKHKMIEKAGAWYSY 272


>gi|295315347|gb|ADF97759.1| RecA [Vibrio sp. KTW-12]
          Length = 271

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 185/272 (68%), Positives = 229/272 (84%), Gaps = 2/272 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   +E +S+GSL LDIALG GG P GRI EIYGPESSGKTTL L  I
Sbjct: 2   KGSIMRLGDNRTM--DVETISTGSLALDIALGAGGLPMGRICEIYGPESSGKTTLTLELI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+
Sbjct: 60  ASAQRQGKTCAFIDAEHALDPIYAQKLGVNIDQLLVSQPDTGEQALEICDALARSGAVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG
Sbjct: 120 IVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ + 
Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQADT 239

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
            I+YG+G +  GELIDLGVK   VDK+GAW++
Sbjct: 240 QILYGQGFNRLGELIDLGVKHKFVDKAGAWYT 271


>gi|115441659|ref|NP_001045109.1| Os01g0901200 [Oryza sativa Japonica Group]
 gi|56784510|dbj|BAD82767.1| putative recA protein [Oryza sativa Japonica Group]
 gi|56784869|dbj|BAD82109.1| putative recA protein [Oryza sativa Japonica Group]
 gi|113534640|dbj|BAF07023.1| Os01g0901200 [Oryza sativa Japonica Group]
 gi|222619696|gb|EEE55828.1| hypothetical protein OsJ_04434 [Oryza sativa Japonica Group]
          Length = 429

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 182/372 (48%), Positives = 255/372 (68%), Gaps = 16/372 (4%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N+  K  AL  A+ QI   +GKGAIM LG +      + VVS+GS  LD+ALG GG P
Sbjct: 59  EENLSKKDLALHQAIDQITSAFGKGAIMWLG-RSEGRREVPVVSTGSFSLDLALGTGGLP 117

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR++E+YGPE+SGKTTLALH IA++QK GG CAFVDAEHALD   A  +GV+  NLL+S
Sbjct: 118 KGRVIEVYGPEASGKTTLALHVIAEAQKHGGYCAFVDAEHALDPALAESIGVNTSNLLLS 177

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD GEQAL + D L+RSG+VD++V+DSVAAL P++E++G+MG++   +QARLMSQALRK
Sbjct: 178 QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKSELDGEMGDAHVALQARLMSQALRK 237

Query: 186 LTSSISRSKCILVFINQMRMKIGV---MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           L+ S+S S+ IL+FINQ+R K+       G  E T+GGNALKFY+SVR++I+R+G +K  
Sbjct: 238 LSHSLSLSQTILLFINQIRSKVTTFGGFGGPMEVTSGGNALKFYASVRMNIKRIGLVKKG 297

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK-SGAWFSF 301
           +   G+Q  VK+VKNK A PFK  +F++ +G+GI    ELI+LG+K  +V K  GA++SF
Sbjct: 298 EETIGSQVLVKIVKNKHAPPFKTAQFELEFGKGICRSSELIELGLKHKLVKKLGGAFYSF 357

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVAD----------SLLQEPAINTK 351
             +   +G++  K +L EN  IA+ +E+ LR+     A           S L E ++ T+
Sbjct: 358 NEES-YRGKDALKSYLNENESIAKELETNLRKLMETQAPKKQEDEGDFLSDLPEESLATE 416

Query: 352 DDADKDDTDNVE 363
             ++++    +E
Sbjct: 417 TSSEEELAAVIE 428


>gi|54020324|ref|YP_115556.1| recombinase A [Mycoplasma hyopneumoniae 232]
 gi|59798156|sp|Q602A9|RECA_MYCH2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|166220783|sp|Q4A8X3|RECA_MYCH7 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|53987497|gb|AAV27698.1| recA protein [Mycoplasma hyopneumoniae 232]
 gi|144575252|gb|AAZ53416.2| recombination protein [Mycoplasma hyopneumoniae 7448]
 gi|312601007|gb|ADQ90262.1| recombinase A [Mycoplasma hyopneumoniae 168]
          Length = 337

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 163/329 (49%), Positives = 244/329 (74%), Gaps = 2/329 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M  +++   L+ AL++I++ +G  +IM LG +  I    EV SSGS+ +D+ALGIGGFPK
Sbjct: 1   MTEINEKSLLKQALAEIKKKFGNESIMVLGEKPPI--DTEVFSSGSMAIDMALGIGGFPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTT++LH IA+ QK GG  AF+DAEH++D  YA+ LG+D+ NL++SQ
Sbjct: 59  GRIIEIYGPESSGKTTISLHAIAEVQKQGGIAAFIDAEHSIDPQYAKNLGIDIDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+GEQAL+I D L ++ A+D+IV+DSVAAL P AE++G+M + + G QARLMS+ALRK+
Sbjct: 119 PDSGEQALDIVDTLTKTKAIDLIVVDSVAALVPMAELQGEMKDQVIGAQARLMSKALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+S++++   ++FINQ+R K+GV+FG+PETT GG  LKFY+S+RLD+R++  I   + IT
Sbjct: 179 TASLNKNGTTVIFINQIREKVGVIFGNPETTPGGRGLKFYASIRLDVRKIQQITSGNDIT 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G+  ++KVVKNK+A PFK    +I++ +GIS   E+  LG +  I+ + G+WF++KG+ +
Sbjct: 239 GHSVKIKVVKNKLAIPFKTALVEIVFAKGISKSAEIAQLGEELGILVRKGSWFAYKGENI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNA 335
            QG+ N K+ L  N ++   I+  + +  
Sbjct: 299 AQGKVNLKLLLENNTKLFNEIKDQIIEKL 327


>gi|215271618|emb|CAR57842.1| recombination-repair protein [Vibrio harveyi]
 gi|215271620|emb|CAR57843.1| recombination-repair protein [Vibrio harveyi]
 gi|215271622|emb|CAR57844.1| recombination-repair protein [Vibrio harveyi]
 gi|215271624|emb|CAR57845.1| recombination-repair protein [Vibrio harveyi]
 gi|215271626|emb|CAR57846.1| recombination-repair protein [Vibrio harveyi]
 gi|215271628|emb|CAR57847.1| recombination-repair protein [Vibrio harveyi]
          Length = 271

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 183/272 (67%), Positives = 230/272 (84%), Gaps = 2/272 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG
Sbjct: 119 MVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+   
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANT 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
            IMYG+G +  GELIDLGVK  +V+K+GAW+S
Sbjct: 239 QIMYGQGFNREGELIDLGVKHKLVEKAGAWYS 270


>gi|166220784|sp|Q4AAV6|RECA_MYCHJ RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|144227436|gb|AAZ44129.2| recombination protein [Mycoplasma hyopneumoniae J]
          Length = 337

 Score =  292 bits (746), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 164/329 (49%), Positives = 244/329 (74%), Gaps = 2/329 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M  +++   L+ AL++I++ +G  +IM LG +  I    EV SSGS+ +D+ALGIGGFPK
Sbjct: 1   MTEINEKSLLKQALAEIKKKFGNESIMVLGEKPPI--DTEVFSSGSMAIDMALGIGGFPK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYGPESSGKTT++LH IA+ QK GG  AF+DAEH++D  YA+ LG+D+ NL++SQ
Sbjct: 59  GRIVEIYGPESSGKTTISLHAIAEVQKQGGIAAFIDAEHSIDPQYAKNLGIDIDNLILSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+GEQAL+I D L ++ A+D+IV+DSVAAL P AE++G+M + + G QARLMS+ALRK+
Sbjct: 119 PDSGEQALDIVDTLTKTKAIDLIVVDSVAALVPMAELQGEMKDQVIGAQARLMSKALRKI 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T+S++++   ++FINQ+R K+GV+FG+PETT GG  LKFY+S+RLD+R++  I   + IT
Sbjct: 179 TASLNKNGTTVIFINQIREKVGVIFGNPETTPGGRGLKFYASIRLDVRKIQQITSGNDIT 238

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G+  ++KVVKNK+A PFK    +I++ +GIS   E+  LG +  I+ + G+WF++KG+ +
Sbjct: 239 GHSVKIKVVKNKLAIPFKTALVEIVFAKGISKSAEIAQLGEELGILVRKGSWFAYKGENI 298

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNA 335
            QG+ N K+ L  N ++   I+  + +  
Sbjct: 299 AQGKVNLKLLLENNTKLFNEIKDQIIEKL 327


>gi|256384198|gb|ACU78768.1| protein RecA [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256385030|gb|ACU79599.1| protein RecA [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296456012|gb|ADH22247.1| protein RecA [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 345

 Score =  292 bits (746), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 172/325 (52%), Positives = 243/325 (74%), Gaps = 6/325 (1%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SK L+ A+ +I++++GKG+IM LG   ++   IE  SSGSL LD ALGIGG+PKGRI+EI
Sbjct: 22  SKELKEAIKEIEKMFGKGSIMVLGQSDNL--NIETFSSGSLLLDNALGIGGYPKGRIIEI 79

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL+LH I + QK GG  AF+DAEH+L+  Y + LG+D   LL+SQPD GEQ
Sbjct: 80  YGPESSGKTTLSLHAICEVQKLGGIAAFIDAEHSLEPKYCQTLGIDTNKLLVSQPDNGEQ 139

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           AL+I +ML+ S ++D+IV+DSVAAL P+ E++G+MG+   G+QAR+MS+ALRKL   I++
Sbjct: 140 ALDILEMLINSNSIDLIVVDSVAALVPKTELDGEMGDQSIGLQARMMSKALRKLNGLIAK 199

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           S   ++FINQ+R KIGV+FG+PETTTGG ALKF+SS+RL++R+  +I +   I GN+ ++
Sbjct: 200 SNTTVIFINQLREKIGVIFGNPETTTGGKALKFFSSIRLEVRKAENILNNSEIIGNKIKI 259

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK A PFK     ++Y +GI   GEL+DL V   I++KSG W+S++ +++GQGR +
Sbjct: 260 KVVKNKTAIPFKTTTISLLYNKGIDKLGELVDLLVSYEIIEKSGVWYSYQNEKIGQGRTS 319

Query: 313 SKIFL--RENI--EIAENIESLLRQ 333
              +L   EN   E+ E ++ L++Q
Sbjct: 320 VIQWLNADENKINELTEQVKKLIKQ 344


>gi|321531592|gb|ADW94626.1| RecA protein [Deinococcus radiopugnans ATCC 19172]
          Length = 342

 Score =  292 bits (746), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 170/343 (49%), Positives = 246/343 (71%), Gaps = 4/343 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            ++ KAL+ A+ QI++  GKG++M+LG++  +   ++ + +GSL LD+ALG+GG PKGR+
Sbjct: 3   TEQQKALQTAMMQIEKQLGKGSMMKLGAETKL--EVQAIWTGSLSLDVALGVGGIPKGRV 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
            EIYGPES GKTT+AL  +AQ+Q  GGTCAF+DAEHAL    AR LGV+   LL+SQPD 
Sbjct: 61  TEIYGPESGGKTTVALSVVAQAQNAGGTCAFIDAEHALFPGVARPLGVNTNELLVSQPDN 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           G+Q LEI D+LV SGA+D++V+DSVAALTPRAE++G+MG SLPG+QARLMSQALRKLT+ 
Sbjct: 121 GDQLLEIMDLLVHSGAIDVVVVDSVAALTPRAEMDGEMG-SLPGLQARLMSQALRKLTAI 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS-IKDKDSITGN 248
           +S++    + INQ+R  +GVM+G PETTTGG ALK Y+SVRLD+R++G   K  +     
Sbjct: 180 LSKTGTAAMLINQVRENMGVMYGKPETTTGGRALKLYASVRLDVRKMGQPTKVGNDAVAK 239

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
             ++K VKNK+A+P K+VE  ++YG+G+    +L+DL     I+ K+G+++S+  +R+GQ
Sbjct: 240 TVKMKTVKNKVAAPLKEVELALVYGKGLDQLSDLVDLAADMDIIKKAGSFYSYGDERMGQ 299

Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           G+E +  FL E  ++  +I   +         + L EPA+  +
Sbjct: 300 GKEKAMAFLSERPDLLADIRERVLAQMRGTPVAPLPEPALVAE 342


>gi|196227999|ref|ZP_03126866.1| recA protein [Chthoniobacter flavus Ellin428]
 gi|196227402|gb|EDY21905.1| recA protein [Chthoniobacter flavus Ellin428]
          Length = 307

 Score =  292 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 173/304 (56%), Positives = 238/304 (78%), Gaps = 3/304 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG+   +   +EV+ +G++ +D ALG+GGFP+GR+VE++GPESSGKTTL L  +AQ+Q
Sbjct: 1   MRLGADQKL--DVEVIPTGNILIDRALGVGGFPRGRVVEVFGPESSGKTTLTLTVVAQAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG  AF+D EHALD  YA+KLGV+L +LL+SQP +GE+AL I + LVRS A+D+IVID
Sbjct: 59  KRGGLAAFIDVEHALDPQYAKKLGVNLDDLLVSQPSSGEEALRICETLVRSNALDVIVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL  +AE+EG++G++  G QARLMS ALRKLTS IS+++ I +F NQ+R KIGVMFG
Sbjct: 119 SVAALVTKAELEGEIGDTTVGAQARLMSAALRKLTSLISKARTICIFTNQIREKIGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQTRVKVVKNKMASPFKQVEFDIM 271
           +PETT GG ALKFYSSVR+DIRR+G+IK  D ++TGN+T+VK+VKNK+A PF + EFDIM
Sbjct: 179 NPETTPGGKALKFYSSVRVDIRRIGAIKIGDGTVTGNRTKVKIVKNKVAPPFTEAEFDIM 238

Query: 272 YGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLL 331
           Y EGIS  G L+DL ++  IV+K G+W S+KG +L QGR+ +K  ++ +  + E +E+ +
Sbjct: 239 YNEGISSTGALLDLALEKGIVEKRGSWLSYKGNQLAQGRDAAKELIKNDTALYEELETAV 298

Query: 332 RQNA 335
           +   
Sbjct: 299 KAKL 302


>gi|15828723|ref|NP_326083.1| recombinase A [Mycoplasma pulmonis UAB CTIP]
 gi|730485|sp|P29226|RECA_MYCPU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|520364|gb|AAA20406.1| sequence derived from overlapping PCR products [Mycoplasma
           pulmonis]
 gi|14089665|emb|CAC13425.1| RECOMBINATION PROTEIN RECA [Mycoplasma pulmonis]
          Length = 339

 Score =  292 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 171/321 (53%), Positives = 240/321 (74%), Gaps = 2/321 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           K +++ + +I++ +G  +IM LG +      ++V SSGS  ++ ALGIGGFPKGRI+EI+
Sbjct: 15  KIIKSTIEEIEKKFGNESIMLLGQKEKC--DVDVFSSGSYAINSALGIGGFPKGRIIEIF 72

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTT+ALHTIA+ QK  G  AF+D EH++D +YA+ LG+D+ NLLISQPD+GEQA
Sbjct: 73  GPESSGKTTIALHTIAEIQKKNGFAAFIDVEHSIDPVYAKNLGIDIDNLLISQPDSGEQA 132

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI D+L +SG++D+IV+DSVAAL P AE+ G+M +   G+QARLMS+ALRK+T S+S++
Sbjct: 133 LEIVDILAKSGSIDLIVVDSVAALVPEAELNGEMKDQSIGLQARLMSKALRKITGSLSKN 192

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
           K  ++FINQ+R KIGV+FG+PETT GG ALKFY+S+RLD+R+  +I   + I+GNQ RVK
Sbjct: 193 KTSVIFINQVREKIGVVFGNPETTPGGRALKFYASIRLDVRKSTNIMLNNDISGNQIRVK 252

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VVKNK+A PFK  E +I++ +GI+ FGE+ DL +   ++ K GAWFS+ G  + QGR+  
Sbjct: 253 VVKNKLAPPFKIAETEIIFSKGINKFGEVADLALVHDVLQKKGAWFSYNGNNIAQGRQKL 312

Query: 314 KIFLRENIEIAENIESLLRQN 334
              L  N E+ E I   + + 
Sbjct: 313 IAQLESNNELFEEIFQKIVEK 333


>gi|313678361|ref|YP_004056101.1| RecA protein [Mycoplasma bovis PG45]
 gi|312950708|gb|ADR25303.1| RecA protein [Mycoplasma bovis PG45]
          Length = 330

 Score =  291 bits (745), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 179/331 (54%), Positives = 247/331 (74%), Gaps = 2/331 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M      N   +   +++ L++I R +G  AIM + +Q +I E +EV SSGS  L+ ALG
Sbjct: 1   MKTENNENNT-QMNLIKSTLNEITRKFGAEAIM-MFNQDTIDEKVEVFSSGSYLLNNALG 58

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG+PKGRIVEIYGPESSGKTTL LH IA+ QK GG  AF+DAEHA+D +YAR LG+DL 
Sbjct: 59  IGGYPKGRIVEIYGPESSGKTTLCLHAIAEVQKQGGIAAFIDAEHAIDPLYARNLGIDLN 118

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            L++SQPD+GEQA+EI D+L +SGAVD+IV+DSVAAL P AE+EG+M +   G+QARLMS
Sbjct: 119 TLILSQPDSGEQAMEIVDILAKSGAVDLIVVDSVAALVPIAELEGEMRDMQVGVQARLMS 178

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           +ALRK+T S+ ++K  ++F+NQ+R KIGVMFG+PETTTGG ALKFY+S+RL++R+  SI 
Sbjct: 179 KALRKITGSLHKNKTTVIFVNQIREKIGVMFGNPETTTGGRALKFYASIRLEVRKTTSIT 238

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           +   ITGN+ ++KVVKNK+++P+K    +I++ +GI   GELIDL  +  + DK GAW++
Sbjct: 239 EGKDITGNEIKIKVVKNKLSAPYKTFTTEILFSKGIDSTGELIDLACEKGVFDKKGAWYA 298

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLL 331
           ++G+ + QG+   K FL  N E  + IE L+
Sbjct: 299 YEGKNITQGKRALKDFLENNPEFKQEIEKLV 329


>gi|260433748|ref|ZP_05787719.1| protein RecA [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417576|gb|EEX10835.1| protein RecA [Silicibacter lacuscaerulensis ITI-1157]
          Length = 298

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 202/286 (70%), Positives = 236/286 (82%), Gaps = 4/286 (1%)

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           G   +  GP   GKTTL LH IA+ QK GG CAFVDAEHALD  YARKLGVDL  LLISQ
Sbjct: 13  GGSSKSTGP-KVGKTTLTLHCIAEQQKRGGVCAFVDAEHALDPQYARKLGVDLDELLISQ 71

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEITD LVRSGAV+++V+DSVAALTP++E+EGDMG+S  G+QARLMSQA+RKL
Sbjct: 72  PDTGEQALEITDTLVRSGAVNMVVVDSVAALTPKSELEGDMGDSSVGVQARLMSQAMRKL 131

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T SI+RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIKD+D + 
Sbjct: 132 TGSIARSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIKDRDEVV 191

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GNQTRVKVVKNK+A PFKQVEFDIMYGEGIS  GEL+DLGVKA +V+KSG+WFS+  +R+
Sbjct: 192 GNQTRVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVKAGVVEKSGSWFSYGDERI 251

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           GQGREN+K +LR++  IA  IE  +R   GL  D     PA +  D
Sbjct: 252 GQGRENAKQYLRDHNRIALEIEDKIRAAHGLEFDMP---PAADEDD 294


>gi|219111175|ref|XP_002177339.1| chloroplast-targeted nuclear-encoded recombinase [Phaeodactylum
           tricornutum CCAP 1055/1]
 gi|217411874|gb|EEC51802.1| chloroplast-targeted nuclear-encoded recombinase [Phaeodactylum
           tricornutum CCAP 1055/1]
          Length = 431

 Score =  291 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 186/363 (51%), Positives = 262/363 (72%), Gaps = 10/363 (2%)

Query: 2   DYRKEMNIVD--KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIAL 59
           +   E   +D  K  AL+  L+QI+R YG+G+I++LG   ++   ++ + SGSL LD AL
Sbjct: 67  ELENERPTMDPAKRAALDGVLNQIERNYGRGSIVKLGDADNM--KVDTIGSGSLTLDAAL 124

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           G GGFPKGR+VEIYGPESSGKTTLALH IA+SQK GGT AFVDAEHALD  YA KLGVD+
Sbjct: 125 G-GGFPKGRVVEIYGPESSGKTTLALHAIAESQKVGGTAAFVDAEHALDPAYAAKLGVDI 183

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
            NLL+SQPD+GE AL++ D LVRS AVD+IV+DSVAAL PRAE+EGDM ++  G+QARLM
Sbjct: 184 DNLLVSQPDSGEMALDVVDQLVRSAAVDVIVVDSVAALVPRAELEGDMSDAQIGLQARLM 243

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           S+A+RK+T S++ S+C ++F+NQ+R K+GV++GSPE T+GGNALKFY+SVRLD RR   +
Sbjct: 244 SKAMRKITGSLALSQCTVIFLNQLRSKVGVIYGSPEVTSGGNALKFYASVRLDTRRKEIL 303

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
                 +G + +VKVVKNK+A+PFK V  D+++G GI   G ++D  +  +I+++ G+WF
Sbjct: 304 ---PENSGIRVKVKVVKNKVAAPFKIVNLDLLFGSGIDQIGCMLDAAMDLNIIERRGSWF 360

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           S+KGQ + QGR N    ++ + ++   +E+ +R     +   +  +P  +T+     +D 
Sbjct: 361 SYKGQNMAQGRINVVEMIKSDTKLMAQLETEVRLALSEMGKDI--KPTADTESLETLEDV 418

Query: 360 DNV 362
           + V
Sbjct: 419 NTV 421


>gi|269784288|emb|CBH50789.1| recA protein [Vibrio sp. C 2.4]
          Length = 270

 Score =  291 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 186/272 (68%), Positives = 230/272 (84%), Gaps = 2/272 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +Q
Sbjct: 1   MRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VID
Sbjct: 59  KVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG
Sbjct: 119 SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I+Y
Sbjct: 179 NPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILY 238

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           G+G +  GELIDLGVK  +V+K+GAW+S+ G+
Sbjct: 239 GKGFNREGELIDLGVKNKLVEKAGAWYSYNGE 270


>gi|215271630|emb|CAR57848.1| recombination-repair protein [Vibrio harveyi]
 gi|215271632|emb|CAR57849.1| recombination-repair protein [Vibrio harveyi]
 gi|215271634|emb|CAR57850.1| recombination-repair protein [Vibrio harveyi]
 gi|215271636|emb|CAR57851.1| recombination-repair protein [Vibrio harveyi]
          Length = 270

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 182/271 (67%), Positives = 229/271 (84%), Gaps = 2/271 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 2   KGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D+
Sbjct: 60  AAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG
Sbjct: 120 MVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+   
Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANT 239

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
            IMYG+G +  GELIDLGVK  +V+K+GAW+
Sbjct: 240 QIMYGQGFNREGELIDLGVKHKLVEKAGAWY 270


>gi|289524802|emb|CBJ94457.1| recA protein [Vibrio sp. C15.18]
 gi|289524804|emb|CBJ94458.1| recA protein [Vibrio sp. Cmf 5.9]
 gi|289524810|emb|CBJ94461.1| recA protein [Vibrio sp. Rd 14.3]
          Length = 270

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 185/272 (68%), Positives = 230/272 (84%), Gaps = 2/272 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +Q
Sbjct: 1   MRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VID
Sbjct: 59  KVGKTCAFIDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG
Sbjct: 119 SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I+Y
Sbjct: 179 NPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILY 238

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           G+G +  GELIDLGVK  +V+K+GAW+S+ G+
Sbjct: 239 GKGFNREGELIDLGVKNKLVEKAGAWYSYNGE 270


>gi|52630769|gb|AAU84852.1| RecA [Burkholderia graminis C4D1M]
          Length = 271

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 197/271 (72%), Positives = 239/271 (88%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF
Sbjct: 1   VVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKIGGTAAF 60

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           +DAEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+
Sbjct: 61  IDAEHALDIQYAGKLGVNVNDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPK 120

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
           AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGG
Sbjct: 121 AEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGG 180

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           NALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  G
Sbjct: 181 NALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQG 240

Query: 281 ELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
           E+IDLGV+A IVDK+GAW+S+ G+R+GQ  E
Sbjct: 241 EIIDLGVQAKIVDKAGAWYSYSGERIGQAGE 271


>gi|1842441|gb|AAB47709.1| RecA [Bacillus subtilis]
          Length = 280

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 181/283 (63%), Positives = 230/283 (81%), Gaps = 3/283 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG +      I  V SGSL LD ALGIGG+P+GR
Sbjct: 1   MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTR--ISTVPSGSLALDTALGIGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT+ALH IA+ Q+   T AF+DAEHALD +YA+KLGV+++ LL+SQPD
Sbjct: 59  IIEVYGPESSGKTTVALHAIAEVQQQ-RTSAFIDAEHALDPVYAQKLGVNIEELLLSQPD 117

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVDI+V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 118 TGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 177

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K  + + GN
Sbjct: 178 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGN 237

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASI 291
           +T++KVVKNK+A PF+  E DIMYGEGIS  GE+IDLG +  I
Sbjct: 238 KTKIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDI 280


>gi|269123881|ref|YP_003306458.1| recA protein [Streptobacillus moniliformis DSM 12112]
 gi|268315207|gb|ACZ01581.1| recA protein [Streptobacillus moniliformis DSM 12112]
          Length = 348

 Score =  290 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 183/330 (55%), Positives = 245/330 (74%), Gaps = 5/330 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             DK K L+ AL QI + YG+G+IM+LG    +   ++V+S+GS+ +D+ALGIGG P+GR
Sbjct: 10  NDDKLKGLKVALDQITKEYGEGSIMKLGENKKM--DVKVISTGSINIDLALGIGGVPRGR 67

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYG ESSGKTT+ALH IA++QK GG  AF+DAEHALD +YA+ LGVD+  LLISQPD
Sbjct: 68  IIEIYGAESSGKTTIALHIIAEAQKNGGLAAFIDAEHALDPVYAKALGVDVDELLISQPD 127

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQAL+I D LVRSGAVD++V+DSVAAL P+AEIEG+M +   G+QARLMS+ALRKLTS
Sbjct: 128 TGEQALDIADTLVRSGAVDVVVVDSVAALVPKAEIEGEMSDQQMGLQARLMSKALRKLTS 187

Query: 189 SISRSKCILVFINQMRMKIGVMFGSP---ETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           SIS+S  +++FINQ+R KIG    +P    TT+GG ALKF+SSVR++I++  SIK  D +
Sbjct: 188 SISKSDTVMIFINQIREKIGGFSFTPGVQTTTSGGRALKFFSSVRMEIKKALSIKQGDDV 247

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
            G +T  K+ KNK+A P K+ +F I+YG+GIS   E+ DL ++  I  KSG+WFS+  ++
Sbjct: 248 IGTETIAKITKNKVAPPHKEAKFAILYGKGISHITEVFDLALEFDICKKSGSWFSYGTEK 307

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNA 335
           LGQG+ N +  L  NIE+   IE  +    
Sbjct: 308 LGQGKVNVENLLTTNIELFSKIEEEVMTKL 337


>gi|179185423|gb|ACB78181.1| RecA [Aliivibrio finisterrensis]
          Length = 271

 Score =  290 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 184/273 (67%), Positives = 229/273 (83%), Gaps = 2/273 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA 
Sbjct: 1   SIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD++V
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+ VVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVIGNETRIXVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
           +YG G +  GELIDLGVK  +VDK+GAW+S+ G
Sbjct: 239 LYGXGFNREGELIDLGVKHKLVDKAGAWYSYNG 271


>gi|269784290|emb|CBH50790.1| recA protein [Vibrio sp. C 14.7]
          Length = 270

 Score =  290 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 185/272 (68%), Positives = 229/272 (84%), Gaps = 2/272 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +Q
Sbjct: 1   MRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VID
Sbjct: 59  KVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG
Sbjct: 119 SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I+Y
Sbjct: 179 NPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILY 238

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           G+G +  GELIDL VK  +V+K+GAW+S+ G+
Sbjct: 239 GKGFNREGELIDLSVKNKLVEKAGAWYSYNGE 270


>gi|47459350|ref|YP_016212.1| recombinase A [Mycoplasma mobile 163K]
 gi|59798284|sp|Q6KHC9|RECA_MYCMO RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|47458680|gb|AAT28001.1| recombination protein recA [Mycoplasma mobile 163K]
          Length = 331

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 163/319 (51%), Positives = 235/319 (73%), Gaps = 2/319 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K ++  L +I++ +GK +IM LGS+  +   +E+ S+GSL +D ALGI GFPKGRI+EI
Sbjct: 2   EKEIKNILMEIEKKFGKESIMLLGSKQDL--NVEIFSTGSLAIDHALGINGFPKGRIIEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTT+ALH IA+ QK+GG  AF+DAEH++D  YA+ LGV++ NL++SQPD+GEQ
Sbjct: 60  YGPESSGKTTIALHAIAEIQKSGGVAAFIDAEHSIDPNYAKNLGVNIDNLILSQPDSGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEI D+L +S ++D+IV+DSVAAL P  E+ G+M + + G QARLMS+ALRK+T S+++
Sbjct: 120 ALEIVDILAKSSSIDLIVVDSVAALVPEVELNGEMKDQVMGAQARLMSKALRKITGSLNK 179

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           SK  ++FINQ+R KIG  FG+PETT GG ALKFYSS+RLD+R+V S+   + I+GN  ++
Sbjct: 180 SKTTVIFINQIREKIGTFFGNPETTPGGRALKFYSSIRLDVRKVSSVSTGEVISGNNIKI 239

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK+++PFK+   +I++ +GIS   E ++      I+ + GAWF +  Q + QG+ N
Sbjct: 240 KVVKNKLSAPFKEAFTEIVFSKGISKISEAVEFAENLKIITRKGAWFYYNDQNIAQGKSN 299

Query: 313 SKIFLRENIEIAENIESLL 331
            K  L +N  +   I + +
Sbjct: 300 LKDLLEKNEALYSEILTKV 318


>gi|269114893|ref|YP_003302656.1| RecA protein (Recombinase A) [Mycoplasma hominis]
 gi|268322518|emb|CAX37253.1| RecA protein (Recombinase A) [Mycoplasma hominis ATCC 23114]
          Length = 337

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 175/336 (52%), Positives = 245/336 (72%), Gaps = 2/336 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M      N+  +   +   L +I++ +GK A+M LG + SI    E  SSGSL +D ALG
Sbjct: 1   MKETTNDNLQKEKSIIAETLKEIEKKFGKEAVMILGEKPSIIP--ETFSSGSLTIDRALG 58

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           I G+PKGRI+EIYGPESSGKTTLALH IA+ QKTGG  AF+DAEH++D IYA+ LGVD+ 
Sbjct: 59  INGWPKGRIIEIYGPESSGKTTLALHAIAEIQKTGGIAAFIDAEHSIDPIYAKNLGVDID 118

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL++SQPD+GEQALEI D L +SGA+ +IV+DSVAAL P AE+ G+M + + G QARLMS
Sbjct: 119 NLILSQPDSGEQALEIVDTLSKSGAIGLIVVDSVAALVPEAELNGEMKDQVVGAQARLMS 178

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           +ALRK+T S+S++K  ++FINQ+R KIGV+FG+PETTTGG ALKFYSS+RL++R++ ++ 
Sbjct: 179 KALRKITGSLSKNKTTVIFINQIREKIGVIFGNPETTTGGRALKFYSSIRLEVRKIQNVT 238

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           +   ITGNQ + KVVKNK+A+P+K  + DI++ +GIS   E+I+L  +  I+ K G+W+S
Sbjct: 239 NNGDITGNQIKCKVVKNKLAAPYKTAQIDIIFSKGISKELEIINLAEELGILVKKGSWYS 298

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAG 336
           F G+ + QG  N +  L+ N E+ + ++  +     
Sbjct: 299 FNGENIAQGVLNLQFILQTNKELFDKLKQEVLDKLN 334


>gi|331703415|ref|YP_004400102.1| RecA protein (Recombinase A) [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|328801970|emb|CBW54124.1| RecA protein (Recombinase A) [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 345

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 171/325 (52%), Positives = 242/325 (74%), Gaps = 6/325 (1%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SK L+ A+ +I++++GKG+IM LG   ++   IE  SSGSL LD ALGIGG+PKGRI+EI
Sbjct: 22  SKELKEAIKEIEKMFGKGSIMVLGQSDNL--NIETFSSGSLLLDNALGIGGYPKGRIIEI 79

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL+LH I + QK GG  AF+DAEH+L+  Y + LG+D   LL+SQPD GEQ
Sbjct: 80  YGPESSGKTTLSLHAICEVQKLGGIAAFIDAEHSLEPKYCQTLGIDTNKLLVSQPDNGEQ 139

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           AL+I +ML+ S ++D+IV+DSVAAL P+ E++G+M +   G+QAR+MS+ALRKL   I++
Sbjct: 140 ALDILEMLINSNSIDLIVVDSVAALVPKTELDGEMSDQSIGLQARMMSKALRKLNGLIAK 199

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           S   ++FINQ+R KIGV+FG+PETTTGG ALKF+SS+RL++R+  +I +   I GN+ ++
Sbjct: 200 SNTTVIFINQLREKIGVIFGNPETTTGGKALKFFSSIRLEVRKAENILNNSEIIGNKIKI 259

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK A PFK     ++Y +GI   GEL+DL V   I++KSG W+S++ +++GQGR +
Sbjct: 260 KVVKNKTAIPFKTTTISLLYNKGIDKLGELVDLLVSYEIIEKSGVWYSYQNEKIGQGRTS 319

Query: 313 SKIFL--REN--IEIAENIESLLRQ 333
              +L   EN   E+ E ++ L++Q
Sbjct: 320 VIQWLNADENRINELTEQVKKLIKQ 344


>gi|224531512|ref|ZP_03672144.1| protein RecA [Borrelia valaisiana VS116]
 gi|224510977|gb|EEF81383.1| protein RecA [Borrelia valaisiana VS116]
          Length = 364

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 172/330 (52%), Positives = 254/330 (76%), Gaps = 4/330 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           +   +K +A+E A  QI++ +GKG+++++G    + +GI  +SSGS+ LD ALGIGG+P+
Sbjct: 14  IERANKEEAIELARVQIEKTFGKGSLIKMGE-SPVGKGIISISSGSIVLDEALGIGGYPR 72

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+ LGV++  L +SQ
Sbjct: 73  GRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQ 132

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI + L+RSG +D+IV+DSVAALTP+ EI+G+MG+S  G+QARLMS+ALRK+
Sbjct: 133 PDTGEQALEIAEHLIRSGGIDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKI 192

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKD 243
           T  +S+S   ++FINQ+RM+IG+MFG+PETTTGG+ALKFY+S+RL++R++  +      D
Sbjct: 193 TGILSKSNTCIMFINQIRMRIGIMFGNPETTTGGHALKFYASLRLEVRKIEQVTRSGSSD 252

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+ RVK+VKNK+A PF++VE  I +G+GIS    ++D  +K +++ K+G+W+S   
Sbjct: 253 DVIGNKIRVKIVKNKVAPPFRKVELVIYFGKGISREAGILDAAIKHNLIQKTGSWYSLGD 312

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQ 333
            +LGQGRE+   +L + +E+  +++  LR+
Sbjct: 313 NKLGQGRESVIEYLSKEVELTNDLDKRLRK 342


>gi|269784294|emb|CBH50792.1| recA protein [Vibrio sp. Cmj 13.4]
          Length = 269

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 185/271 (68%), Positives = 228/271 (84%), Gaps = 2/271 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +Q
Sbjct: 1   MRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VID
Sbjct: 59  KVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FIN +RMKIGVMFG
Sbjct: 119 SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINHIRMKIGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I+Y
Sbjct: 179 NPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILY 238

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
           G+G +  GELIDLGVK  +V+K+GAW+S+ G
Sbjct: 239 GKGFNREGELIDLGVKNKLVEKAGAWYSYNG 269


>gi|1172887|sp|P42446|RECA_MYCMY RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|520363|gb|AAA20405.1| sequence derived from overlapping PCR products [Mycoplasma
           mycoides]
          Length = 345

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 171/325 (52%), Positives = 242/325 (74%), Gaps = 6/325 (1%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SK L+ A+ +I++++GKG+IM LG   ++   IE  SSGSL LD ALGIGG+PKGRI+EI
Sbjct: 22  SKELKEAIKEIEKMFGKGSIMVLGQSDNL--NIETFSSGSLLLDNALGIGGYPKGRIIEI 79

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL+LH I + QK GG  AF+DAEH+L+  Y + LG+D   LL+SQPD GEQ
Sbjct: 80  YGPESSGKTTLSLHAICEVQKLGGIAAFIDAEHSLEPKYCQTLGIDTNKLLVSQPDNGEQ 139

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           AL+I +ML+ S ++D+IV+DSVAAL P+ E++G+M +   G+QAR+MS+ALRKL   I++
Sbjct: 140 ALDILEMLINSNSIDLIVVDSVAALVPKTELDGEMSDQSIGLQARMMSKALRKLNWLIAK 199

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           S   ++FINQ+R KIGV+FG+PETTTGG ALKF+SS+RL++R+  +I +   I GN+ ++
Sbjct: 200 SNTTVIFINQLREKIGVIFGNPETTTGGKALKFFSSIRLEVRKAENILNNYEIIGNKIKI 259

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNK A PFK     ++Y +GI   GEL+DL V   I++KSG W+S++ +++GQGR +
Sbjct: 260 KVVKNKTAIPFKTTTISLLYNKGIDKLGELVDLLVSYEIIEKSGVWYSYQNEKIGQGRTS 319

Query: 313 SKIFL--REN--IEIAENIESLLRQ 333
              +L   EN   E+ E ++ L++Q
Sbjct: 320 VIQWLNADENRINELTEQVKKLIKQ 344


>gi|290795099|gb|ADD64565.1| RecA recombinase [Vibrio tasmaniensis]
          Length = 270

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 186/272 (68%), Positives = 230/272 (84%), Gaps = 2/272 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L
Sbjct: 1   QFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTL 58

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA +Q+ G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA
Sbjct: 59  ELIAAAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGA 118

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RM
Sbjct: 119 IDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRM 178

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ
Sbjct: 179 KIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQ 238

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
            E  I+YG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 AETQILYGKGFNREGELIDLGVKNKLVEKAGA 270


>gi|72080381|ref|YP_287439.1| recombinase A [Mycoplasma hyopneumoniae 7448]
          Length = 329

 Score =  289 bits (738), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 162/320 (50%), Positives = 240/320 (75%), Gaps = 2/320 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L+ AL++I++ +G  +IM LG +  I    EV SSGS+ +D+ALGIGGFPKGRI+EIYGP
Sbjct: 2   LKQALAEIKKKFGNESIMVLGEKPPI--DTEVFSSGSMAIDMALGIGGFPKGRIIEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTT++LH IA+ QK GG  AF+DAEH++D  YA+ LG+D+ NL++SQPD+GEQAL+
Sbjct: 60  ESSGKTTISLHAIAEVQKQGGIAAFIDAEHSIDPQYAKNLGIDIDNLILSQPDSGEQALD 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L ++ A+D+IV+DSVAAL P AE++G+M + + G QARLMS+ALRK+T+S++++  
Sbjct: 120 IVDTLTKTKAIDLIVVDSVAALVPMAELQGEMKDQVIGAQARLMSKALRKITASLNKNGT 179

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
            ++FINQ+R K+GV+FG+PETT GG  LKFY+S+RLD+R++  I   + ITG+  ++KVV
Sbjct: 180 TVIFINQIREKVGVIFGNPETTPGGRGLKFYASIRLDVRKIQQITSGNDITGHSVKIKVV 239

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK+A PFK    +I++ +GIS   E+  LG +  I+ + G+WF++KG+ + QG+ N K+
Sbjct: 240 KNKLAIPFKTALVEIVFAKGISKSAEIAQLGEELGILVRKGSWFAYKGENIAQGKVNLKL 299

Query: 316 FLRENIEIAENIESLLRQNA 335
            L  N ++   I+  + +  
Sbjct: 300 LLENNTKLFNEIKDQIIEKL 319


>gi|161728767|dbj|BAF94200.1| recombinase A [Pseudochrobactrum glaciei]
          Length = 255

 Score =  289 bits (738), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 208/257 (80%), Positives = 237/257 (92%), Gaps = 2/257 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL+AALSQI+R +GKG+IM+LG    +   IE V +GSL LDIALG+GG PKGRIVEIYG
Sbjct: 1   ALDAALSQIERQFGKGSIMRLGQSEVV--EIETVPTGSLSLDIALGVGGLPKGRIVEIYG 58

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDTGEQAL
Sbjct: 59  PESSGKTTLALHTIAEAQKKGGMCAFVDAEHALDPVYARKLGVDLESLLISQPDTGEQAL 118

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSGA+D++VIDSVAALTPRAEIEGDMG+SLPG+QARLMSQALRKLT+SISRS 
Sbjct: 119 EITDTLVRSGAIDVLVIDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTASISRSN 178

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D + GNQTRVKV
Sbjct: 179 CMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDEVVGNQTRVKV 238

Query: 255 VKNKMASPFKQVEFDIM 271
           VKNK+A PFKQVEFDIM
Sbjct: 239 VKNKLAPPFKQVEFDIM 255


>gi|71893394|ref|YP_278840.1| recombinase A [Mycoplasma hyopneumoniae J]
          Length = 329

 Score =  289 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 163/320 (50%), Positives = 240/320 (75%), Gaps = 2/320 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L+ AL++I++ +G  +IM LG +  I    EV SSGS+ +D+ALGIGGFPKGRIVEIYGP
Sbjct: 2   LKQALAEIKKKFGNESIMVLGEKPPI--DTEVFSSGSMAIDMALGIGGFPKGRIVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTT++LH IA+ QK GG  AF+DAEH++D  YA+ LG+D+ NL++SQPD+GEQAL+
Sbjct: 60  ESSGKTTISLHAIAEVQKQGGIAAFIDAEHSIDPQYAKNLGIDIDNLILSQPDSGEQALD 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L ++ A+D+IV+DSVAAL P AE++G+M + + G QARLMS+ALRK+T+S++++  
Sbjct: 120 IVDTLTKTKAIDLIVVDSVAALVPMAELQGEMKDQVIGAQARLMSKALRKITASLNKNGT 179

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
            ++FINQ+R K+GV+FG+PETT GG  LKFY+S+RLD+R++  I   + ITG+  ++KVV
Sbjct: 180 TVIFINQIREKVGVIFGNPETTPGGRGLKFYASIRLDVRKIQQITSGNDITGHSVKIKVV 239

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK+A PFK    +I++ +GIS   E+  LG +  I+ + G+WF++KG+ + QG+ N K+
Sbjct: 240 KNKLAIPFKTALVEIVFAKGISKSAEIAQLGEELGILVRKGSWFAYKGENIAQGKVNLKL 299

Query: 316 FLRENIEIAENIESLLRQNA 335
            L  N ++   I+  + +  
Sbjct: 300 LLENNTKLFNEIKDQIIEKL 319


>gi|326528635|dbj|BAJ97339.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 429

 Score =  288 bits (736), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 180/368 (48%), Positives = 248/368 (67%), Gaps = 17/368 (4%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E N+  K  AL  A+ QI   +GKGAIM LG +      + VVS+GS  LD+ALGIGG P
Sbjct: 56  EENMSKKDLALHQAIDQITTSFGKGAIMWLG-RSEGHREVPVVSTGSFSLDLALGIGGLP 114

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKT--GGTCAFVDAEHALDSIYARKLGVDLKNLL 123
           KGR++E+YGPE+SGKTTLALH IA++QK   GG CAFVDAEHALD   A  +GVD  NLL
Sbjct: 115 KGRVIEVYGPEASGKTTLALHVIAEAQKLSGGGYCAFVDAEHALDPTLAESIGVDTSNLL 174

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPD+ EQAL + D L+RSG+VD++V+DSVAAL P+ E++G+MG++   +QARLMSQAL
Sbjct: 175 LSQPDSAEQALSLVDTLIRSGSVDVVVVDSVAALVPKTELDGEMGDAHVALQARLMSQAL 234

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFG----SPETTTGGNALKFYSSVRLDIRRVGSI 239
           RKL+ S+S S+ +L+FINQ+R K+    G      E T+GGNALKFY+SVRL+IRR+G +
Sbjct: 235 RKLSHSLSLSQTVLLFINQIRSKVQTFGGGFGGPQEVTSGGNALKFYASVRLNIRRIGMV 294

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS-GAW 298
           K  + I G+Q  VK+VKNK A PF+  +F++ +G+GI    EL +LG+K  +V K+ GA+
Sbjct: 295 KKGEEIIGSQVTVKIVKNKHAPPFRTAQFELEFGKGICRSSELFELGLKHKLVKKTGGAY 354

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLR--------QNAGLVADSLLQEPAINT 350
           +SF  Q+   G++  K FL +N   A+ +E  LR        +      D L   P    
Sbjct: 355 YSFNEQQF-HGKDAVKSFLTKNEGAAKELEMELRRLIQTEPPRKQEAEDDMLGDLPEETV 413

Query: 351 KDDADKDD 358
           + +  +++
Sbjct: 414 RPETSEEE 421


>gi|193216565|ref|YP_001999807.1| recombinase A [Mycoplasma arthritidis 158L3-1]
 gi|193001888|gb|ACF07103.1| recombination protein RecA [Mycoplasma arthritidis 158L3-1]
          Length = 334

 Score =  288 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 165/330 (50%), Positives = 246/330 (74%), Gaps = 2/330 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
            NI D+++ LEA L +I++ +GK +IM LG +  I    EV SSGS+ ++ ALGIGG+PK
Sbjct: 3   KNIKDENQLLEATLKEIEKKFGKESIMILGQKPEITP--EVFSSGSISINRALGIGGWPK 60

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+E+YGPESSGKTT+ALH IA+ QK GG  AF+DAEH++D  YA+ +GVD+ NL++SQ
Sbjct: 61  GRIIEVYGPESSGKTTIALHAIAEIQKLGGIAAFIDAEHSIDPNYAKNVGVDIDNLILSQ 120

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+GEQALEI D L ++GA+D+IV+DSVAAL P  E++G+M + + G QARLMS+ALRK+
Sbjct: 121 PDSGEQALEIVDSLAKTGAIDLIVVDSVAALVPEVELQGEMRDQVVGAQARLMSKALRKI 180

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T S++++K  ++FINQ+R KIGV+FG+PETT+GG ALKFYSS+RL++R+  ++     I 
Sbjct: 181 TGSLAKNKTTIIFINQIREKIGVIFGNPETTSGGRALKFYSSIRLEVRKQQNLTSNGDIL 240

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GNQ + KVVKNK+A+P+K  + +I++ +GIS   E+I+   +  I+ K G+W+S++ + +
Sbjct: 241 GNQVKCKVVKNKLAAPYKNAQIEIIFSQGISLTSEIINFAEEFGILTKKGSWYSYENENI 300

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAG 336
            QG  N ++ L  N ++ + I++ +     
Sbjct: 301 AQGVANLQLLLETNHDLFKKIKTQVEDKMN 330


>gi|189219553|ref|YP_001940194.1| RecA/RadA recombinase [Methylacidiphilum infernorum V4]
 gi|189186411|gb|ACD83596.1| RecA/RadA recombinase [Methylacidiphilum infernorum V4]
          Length = 314

 Score =  288 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 177/303 (58%), Positives = 230/303 (75%), Gaps = 2/303 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG   S  + IE + +G L +D ALG+GGFP+GRIVEIYGPESSGKTTLAL  IAQ+Q
Sbjct: 1   MRLGDDRSRLQ-IETIPTGCLVIDKALGVGGFPRGRIVEIYGPESSGKTTLALTVIAQAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG    +D EHALD  Y RKLGV++  LLISQPD+GE+AL I + L+RS AVD+IVID
Sbjct: 60  KMGGVGVIIDVEHALDPQYCRKLGVNMNELLISQPDSGEEALTIAETLIRSNAVDVIVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTPRAEIEG MG+++ G QARLMS ALRKLT+ IS++K + +F NQ+R KIGVMFG
Sbjct: 120 SVAALTPRAEIEGQMGDAVVGAQARLMSSALRKLTAQISKAKTVCIFTNQLRDKIGVMFG 179

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIK-DKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           +PETT GG ALKFY+SVR+DIR++  +K    ++ GN+T++KVVKNK+A PF + EFDI+
Sbjct: 180 NPETTPGGKALKFYASVRIDIRKLAQLKGTDGTVYGNRTKLKVVKNKVAPPFTECEFDIL 239

Query: 272 YGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLL 331
           Y EGIS  G LIDL ++  IV+K G+W  F+G +LGQGRE     L+ ++ +   +E+  
Sbjct: 240 YNEGISREGSLIDLAIEEQIVEKRGSWIYFEGTQLGQGREAVVSLLKTDVNLCAKLEAAA 299

Query: 332 RQN 334
           ++ 
Sbjct: 300 KEK 302


>gi|290795097|gb|ADD64564.1| RecA recombinase [Vibrio splendidus]
          Length = 270

 Score =  288 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 185/272 (68%), Positives = 230/272 (84%), Gaps = 2/272 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L
Sbjct: 1   QFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTL 58

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             I+ +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA
Sbjct: 59  ELISAAQKVGKTCAFIDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGA 118

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RM
Sbjct: 119 IDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRM 178

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ
Sbjct: 179 KIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQ 238

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
            E  I+YG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 AETQILYGKGFNREGELIDLGVKNKLVEKAGA 270


>gi|240047769|ref|YP_002961157.1| recombinase A [Mycoplasma conjunctivae HRC/581]
 gi|239985341|emb|CAT05354.1| Protein recA [Mycoplasma conjunctivae]
          Length = 329

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 168/325 (51%), Positives = 239/325 (73%), Gaps = 6/325 (1%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           K L+ AL  I++ +G  +IM LG +  +    EV SSGSL +D ALG+GGFPKGRI+EI+
Sbjct: 5   KLLKQALIDIKKKFGNESIMVLGERPPV--DTEVFSSGSLSIDKALGVGGFPKGRIIEIF 62

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTT+ LH IA+ QK GG  AF+DAEHA+D  YA+ LG+D+ NL++SQPD+GEQA
Sbjct: 63  GPESSGKTTITLHAIAEVQKQGGIAAFIDAEHAIDPQYAKNLGIDIDNLILSQPDSGEQA 122

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           L+I D LV++GA+D+IV+DSVAAL P AE+EG+M + + G QARLMS+ALRK+T+S++++
Sbjct: 123 LDIVDTLVKTGAIDLIVVDSVAALVPTAELEGEMKDQVIGAQARLMSKALRKITASLNKN 182

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
              ++FINQ+R K+GV+FG+PETT GG  LKFYSS+RLD+R++  I   + ITG+  ++K
Sbjct: 183 GTTVIFINQIREKVGVIFGNPETTPGGRGLKFYSSIRLDVRKIQQISTGNDITGHTVKIK 242

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VVKNK+A PFK    +I++ +GIS   E+  L  +  I+++ G+WF++ GQ + QG+ N 
Sbjct: 243 VVKNKLAIPFKTALVEIIFSKGISKAAEIAQLAEEMLILERKGSWFAYNGQNIAQGKANL 302

Query: 314 KIFLRENIEIAEN----IESLLRQN 334
           ++ L  N  +       IES L+ N
Sbjct: 303 RLLLENNSNLFNELKNIIESKLKDN 327


>gi|6694805|gb|AAF25390.1|AF214743_1 RecA protein [Arthrobacter sp. 'SMCC G991']
          Length = 269

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 174/268 (64%), Positives = 217/268 (80%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
                 IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  
Sbjct: 2   DETRAPIEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRNGGIA 61

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AF+DAEHALD  YA KLGVD   LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL 
Sbjct: 62  AFIDAEHALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALV 121

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           PRAEIEGDMG+S  G+QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTT
Sbjct: 122 PRAEIEGDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTT 181

Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISF 278
           GG ALKFY+SVR+D+RR+ ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS 
Sbjct: 182 GGKALKFYASVRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQGISR 241

Query: 279 FGELIDLGVKASIVDKSGAWFSFKGQRL 306
            G +ID+GV+  I+ KSG+WF++ G +L
Sbjct: 242 EGGIIDMGVEHGIIKKSGSWFTYDGDQL 269


>gi|15558896|dbj|BAB64921.1| chloroplast DNA recombination protein RECA [Chlamydomonas
           reinhardtii]
          Length = 414

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 174/332 (52%), Positives = 226/332 (68%), Gaps = 4/332 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K+K     + +I R +G G+IM+L    S+   IE   SGSL LD ALG GG+P+GRI+E
Sbjct: 62  KAKLFNETVDRITRRFGDGSIMRLSD--SVTANIETFPSGSLTLDAALG-GGYPRGRIIE 118

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPE+SGKTTLA+H   + Q+ GGT A++D EHA D  YA   G  L N   +QP TGE
Sbjct: 119 VYGPEASGKTTLAMHGCGEIQRLGGTVAYIDVEHAFDRTYASA-GHHLNNFWYAQPMTGE 177

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           +ALE+ D L RS   D++VIDSVAAL PRAE+EGD+G    G QARL+SQALRKL++S S
Sbjct: 178 EALEVMDELCRSNVCDLVVIDSVAALVPRAELEGDIGSVQIGSQARLLSQALRKLSASAS 237

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +SK  L FINQ+R KIGVMFG+PETT+GGNALK+YSSVR+DIR+  ++ + D    N+ R
Sbjct: 238 KSKTTLFFINQLRNKIGVMFGNPETTSGGNALKYYSSVRIDIRKKETLSESDQAYANRVR 297

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
            KVVKNK+ASP K+  F+I YG GI F G LID   +  ++ + GA++ +  QRLGQGRE
Sbjct: 298 AKVVKNKVASPHKEALFEIYYGRGIDFLGGLIDTAERLKVLTRRGAFYYYGDQRLGQGRE 357

Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLL 343
                LRE+ E    IE+ +R       D+ L
Sbjct: 358 KVLAALREDAERTAAIEAAVRDVLRANPDAAL 389


>gi|22203529|gb|AAM92267.1| RecA [Bordetella hinzii]
          Length = 289

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 200/267 (74%), Positives = 234/267 (87%), Gaps = 1/267 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+ G    +   I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 22  QIEKQFGKGSIMRYGDN-EVEHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 80

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGTCAFVDAEHALD  YA KLGV+L +LLISQPDTGEQALEITD LV
Sbjct: 81  TLTLQVIAEMQKIGGTCAFVDAEHALDVQYASKLGVNLGDLLISQPDTGEQALEITDALV 140

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG+VD+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT++I R+ C+++FIN
Sbjct: 141 RSGSVDLIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTATIKRTNCMVIFIN 200

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK+A 
Sbjct: 201 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKGDEVVGNETRVKVVKNKVAP 260

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVK 288
           PFKQ EFDIMYG GIS  GE+IDLGV 
Sbjct: 261 PFKQAEFDIMYGAGISREGEIIDLGVP 287


>gi|144575175|gb|AAZ43969.2| recombination protein [Mycoplasma synoviae 53]
          Length = 325

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 161/323 (49%), Positives = 238/323 (73%), Gaps = 2/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           ++K +++AL++I++ +GK +IM L    +    +EV SSGS+ LD ALGI G PKG+I+E
Sbjct: 3   ENKNIKSALNEIEKKFGKESIMVLRDIPNA--DVEVFSSGSILLDNALGINGLPKGKIIE 60

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA+ QK GG  AF+DAEH++D  YA  +GVD+ NL++SQPD+GE
Sbjct: 61  IYGPESSGKTTLTLHAIAEVQKNGGIAAFIDAEHSIDPQYAANIGVDIDNLILSQPDSGE 120

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D+L +SG VD+IV+DSVAAL P AE+ G+M +   G QARLMS+ALRK+T +++
Sbjct: 121 QALEIVDILAKSGNVDLIVVDSVAALVPEAELNGEMKDQQIGAQARLMSKALRKITGNLN 180

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +++  ++FINQ+R K+GV+FG+PETTTGG ALKFY+S+R+++R+   I +   I GN+ +
Sbjct: 181 KNQTTIIFINQIREKVGVIFGNPETTTGGRALKFYASIRIEVRKGSQITEGKDILGNEVK 240

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
            KVVKNK+++P+K  + +I++ +GI  + EL  +G++  I DK G+W+ +K   + QG+ 
Sbjct: 241 FKVVKNKLSAPYKVTQSEILFSKGIDRYNELATIGIENKIFDKKGSWYYYKENNVAQGKA 300

Query: 312 NSKIFLRENIEIAENIESLLRQN 334
             K ++  N EI   I+  L+ N
Sbjct: 301 ALKTYIESNPEIISEIQDTLKSN 323


>gi|290795101|gb|ADD64566.1| RecA recombinase [Vibrio tasmaniensis]
          Length = 269

 Score =  287 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 187/271 (69%), Positives = 230/271 (84%), Gaps = 2/271 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           E  I+YG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 ETQILYGKGFNREGELIDLGVKNKLVEKAGA 269


>gi|148377813|ref|YP_001256689.1| recombinase A [Mycoplasma agalactiae PG2]
 gi|148291859|emb|CAL59250.1| RecA protein [Mycoplasma agalactiae PG2]
          Length = 330

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 176/316 (55%), Positives = 244/316 (77%), Gaps = 1/316 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           ++  L++I R +G+ AIM + +Q SI E +E  SSGS  L+ ALGIGG+PKGRIVEIYGP
Sbjct: 15  IKRTLNEITRKFGQEAIM-MFNQDSIDEQVETFSSGSYLLNSALGIGGYPKGRIVEIYGP 73

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL LH IA+ QK GG  AF+DAEHA+D +YAR LG+DL  L++SQPD+GEQA+E
Sbjct: 74  ESSGKTTLCLHAIAEVQKQGGIAAFIDAEHAIDPLYARNLGIDLNTLILSQPDSGEQAME 133

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D+L +SGAVD+IV+DSVAAL P AE+EG+M +   G+QARLMS+ALRK+T ++ ++K 
Sbjct: 134 IVDILAKSGAVDLIVVDSVAALVPIAELEGEMRDMQVGVQARLMSKALRKITGNLHKNKT 193

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
            ++F+NQ+R KIGVMFG+PETTTGG ALKFY+S+RL++R+  SI +   ITGN+ ++KVV
Sbjct: 194 TVIFVNQIREKIGVMFGNPETTTGGRALKFYASIRLEVRKTTSITEGKDITGNEIKIKVV 253

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK+++P+K    +I++ +GI   GELI+L  +  I DK GAW++++G+ + QG+   K 
Sbjct: 254 KNKLSAPYKSFTTEILFSKGIDATGELIELACEKGIFDKKGAWYAYQGKNITQGKRALKE 313

Query: 316 FLRENIEIAENIESLL 331
           FL  N+E  + IE L+
Sbjct: 314 FLENNLEFKQEIEKLV 329


>gi|215271642|emb|CAR57854.1| recombination-repair protein [Vibrio campbellii]
 gi|215271644|emb|CAR57855.1| recombination-repair protein [Vibrio campbellii]
 gi|215271646|emb|CAR57856.1| recombination-repair protein [Vibrio campbellii]
 gi|215271648|emb|CAR57857.1| recombination-repair protein [Vibrio campbellii]
 gi|215271674|emb|CAR57870.1| recombination-repair protein [Vibrio rotiferianus]
 gi|215271676|emb|CAR57871.1| recombination-repair protein [Vibrio rotiferianus]
 gi|215271678|emb|CAR57872.1| recombination-repair protein [Vibrio rotiferianus]
 gi|215271680|emb|CAR57873.1| recombination-repair protein [Vibrio rotiferianus]
          Length = 268

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 182/270 (67%), Positives = 228/270 (84%), Gaps = 2/270 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG
Sbjct: 119 MVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+   
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANT 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAW 298
            IMYG+G +  GELIDLGVK  +V+K+GAW
Sbjct: 239 QIMYGQGFNREGELIDLGVKHKLVEKAGAW 268


>gi|71894572|ref|YP_278680.1| recombinase A [Mycoplasma synoviae 53]
          Length = 329

 Score =  286 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 161/323 (49%), Positives = 238/323 (73%), Gaps = 2/323 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           ++K +++AL++I++ +GK +IM L    +    +EV SSGS+ LD ALGI G PKG+I+E
Sbjct: 7   ENKNIKSALNEIEKKFGKESIMVLRDIPNA--DVEVFSSGSILLDNALGINGLPKGKIIE 64

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA+ QK GG  AF+DAEH++D  YA  +GVD+ NL++SQPD+GE
Sbjct: 65  IYGPESSGKTTLTLHAIAEVQKNGGIAAFIDAEHSIDPQYAANIGVDIDNLILSQPDSGE 124

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D+L +SG VD+IV+DSVAAL P AE+ G+M +   G QARLMS+ALRK+T +++
Sbjct: 125 QALEIVDILAKSGNVDLIVVDSVAALVPEAELNGEMKDQQIGAQARLMSKALRKITGNLN 184

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +++  ++FINQ+R K+GV+FG+PETTTGG ALKFY+S+R+++R+   I +   I GN+ +
Sbjct: 185 KNQTTIIFINQIREKVGVIFGNPETTTGGRALKFYASIRIEVRKGSQITEGKDILGNEVK 244

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
            KVVKNK+++P+K  + +I++ +GI  + EL  +G++  I DK G+W+ +K   + QG+ 
Sbjct: 245 FKVVKNKLSAPYKVTQSEILFSKGIDRYNELATIGIENKIFDKKGSWYYYKENNVAQGKA 304

Query: 312 NSKIFLRENIEIAENIESLLRQN 334
             K ++  N EI   I+  L+ N
Sbjct: 305 ALKTYIESNPEIISEIQDTLKSN 327


>gi|215271650|emb|CAR57858.1| recombination-repair protein [Vibrio campbellii]
          Length = 268

 Score =  286 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 182/270 (67%), Positives = 227/270 (84%), Gaps = 2/270 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD +YA KLGVD+  LL+SQPDTGEQALEI D L RSGA+D+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPVYAMKLGVDIDALLVSQPDTGEQALEICDALARSGAIDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG
Sbjct: 119 MVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+   
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANT 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAW 298
            IMYG+G +  GELIDLGVK  +V+K+GAW
Sbjct: 239 QIMYGQGFNREGELIDLGVKHKLVEKAGAW 268


>gi|255546127|ref|XP_002514123.1| DNA repair protein reca, putative [Ricinus communis]
 gi|223546579|gb|EEF48077.1| DNA repair protein reca, putative [Ricinus communis]
          Length = 380

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 181/361 (50%), Positives = 247/361 (68%), Gaps = 16/361 (4%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           ++  +  I   YGKGAIM  G +    + + VVS+GS  LD+ALG GG PKGR+VEIYGP
Sbjct: 22  IKLQVHXITSAYGKGAIMWFG-RSIAPKDVPVVSTGSFALDVALGTGGLPKGRVVEIYGP 80

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           E+SGKTTLALH IA++QK GG C FVDAEHALDS  A+ +GV+ +NLL+SQPD GEQAL 
Sbjct: 81  EASGKTTLALHVIAEAQKQGGYCVFVDAEHALDSSLAQSIGVNTENLLLSQPDCGEQALS 140

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           + D L+RSG+VD++V+DSVAAL P+ E++G+MG++   MQARLMSQALRKL+ S+S+S+ 
Sbjct: 141 LVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSQSET 200

Query: 196 ILVFINQMRMKIGV---MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           +L+FINQ+R K+       G  E T GGNALKFY+SVRL+IRRVG IK  +   G+Q +V
Sbjct: 201 VLIFINQVRAKLSTFGGFGGPQEVTCGGNALKFYASVRLNIRRVGLIKKGEETIGSQVQV 260

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           K+VKNK+A PFK V+F++ +G+GI    E+++LGVK   + K+G+++++ GQ    G+E 
Sbjct: 261 KIVKNKLAPPFKTVQFELEFGKGICRDSEIMELGVKHKFLGKAGSFYNYNGQNF-HGKEA 319

Query: 313 SKIFLRENIEIAENIESLLRQNA----------GLVADSLLQEPAINTKDDADKDDTDNV 362
            + FL EN    E +   LR+              V D  L E  I + D  D++    V
Sbjct: 320 FRKFLAENDNAREELVMKLREKLLNAHIDKGQGSEVTDEALVEETI-SPDSTDEEAVTAV 378

Query: 363 E 363
           E
Sbjct: 379 E 379


>gi|211907504|gb|ACJ12281.1| RecA [Vibrio agarivorans]
          Length = 268

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 187/270 (69%), Positives = 229/270 (84%), Gaps = 2/270 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D
Sbjct: 59  IAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAID 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR GSIKD D + GN+TR+KVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEVVGNETRIKVVKNKIAAPFKQAE 238

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGA 297
             I+YG+G +  GELIDLGVK  +++K+GA
Sbjct: 239 TQILYGQGFNREGELIDLGVKNKLIEKAGA 268


>gi|291320510|ref|YP_003515774.1| RecA protein [Mycoplasma agalactiae]
 gi|290752845|emb|CBH40820.1| RecA protein [Mycoplasma agalactiae]
          Length = 330

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 176/316 (55%), Positives = 245/316 (77%), Gaps = 1/316 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           +++ L++I R +G+ AIM + +Q SI E +E  SSGS  L+ ALGIGG+PKGRIVEIYGP
Sbjct: 15  IKSTLNEITRKFGQEAIM-MFNQDSIDEQVETFSSGSYLLNSALGIGGYPKGRIVEIYGP 73

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL LH IA+ QK GG  AF+DAEHA+D +YAR LG+DL  L++SQPD+GEQA+E
Sbjct: 74  ESSGKTTLCLHAIAEVQKQGGIAAFIDAEHAIDPLYARNLGIDLNTLILSQPDSGEQAME 133

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D+L +SGAVD+IV+DSVAAL P AE+EG+M +   G+QARLMS+ALRK+T ++ ++K 
Sbjct: 134 IVDILAKSGAVDLIVVDSVAALVPIAELEGEMRDMQVGVQARLMSKALRKITGNLHKNKT 193

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
            ++F+NQ+R KIGVMFG+PETTTGG ALKFY+S+RL++R+  SI +   ITGN+ ++KVV
Sbjct: 194 TVIFVNQIREKIGVMFGNPETTTGGRALKFYASIRLEVRKTTSITEGKDITGNEIKIKVV 253

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK+++P+K    +I++ +GI   GELI+L  +  I DK GAW++++G+ + QG+   K 
Sbjct: 254 KNKLSAPYKSFTTEILFSKGIDATGELIELSCEKGIFDKKGAWYAYQGKNITQGKRALKE 313

Query: 316 FLRENIEIAENIESLL 331
           FL  N+E  + IE L+
Sbjct: 314 FLENNLEFKQEIEKLV 329


>gi|148879029|emb|CAM07030.1| RecA protein [Mycobacterium sp. MHSD12]
          Length = 289

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 185/290 (63%), Positives = 236/290 (81%), Gaps = 2/290 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG +  + + I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+AL  +A +Q  
Sbjct: 1   LGEE--VRQPISVIPTGSISLDVALGIGGLPRGRVVEIYGPESSGKTTVALXAVAXAQAA 58

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG  AF+ AE ALD  YA+KLGVD  +LL+SQPDTGEQALEI DMLVRSGA+DI+VIDSV
Sbjct: 59  GGIAAFIXAEXALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDILVIDSV 118

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AAL PRAEIEG+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFGSP
Sbjct: 119 AALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSP 178

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           ETTTGG ALKFY+SVRLD+ R+ ++KD     GN+TRVKVVK K++ PFKQ EFDI+YG+
Sbjct: 179 ETTTGGKALKFYASVRLDVXRIETLKDGTDAVGNRTRVKVVKXKVSPPFKQAEFDILYGQ 238

Query: 275 GISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           GIS  G LID+GV+   + KSG+WF++ G++LGQG+EN++ FL EN+++A
Sbjct: 239 GISREGSLIDMGVEHGFIRKSGSWFTYXGEQLGQGKENARKFLLENVDVA 288


>gi|15212460|gb|AAK92001.1| RecA [Bordetella parapertussis]
 gi|15212462|gb|AAK92002.1| RecA [Bordetella parapertussis]
          Length = 282

 Score =  284 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 194/262 (74%), Positives = 230/262 (87%), Gaps = 1/262 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           SQI++ +GKG+IM+ G    +   I+VVS+GSLGLDIALG+GG P+GR++E+YGPESSGK
Sbjct: 22  SQIEKQFGKGSIMRYGDN-EVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEVYGPESSGK 80

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA+ QK GGTCAFVDAEHALD  YA KLGV+L +LLISQPDTGEQALEITD L
Sbjct: 81  TTLTLQVIAEMQKLGGTCAFVDAEHALDVQYASKLGVNLTDLLISQPDTGEQALEITDAL 140

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT++I R+ C+++FI
Sbjct: 141 VRSGSVDLIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFI 200

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK  D + GN+TRVKVVKNK+A
Sbjct: 201 NQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKKGDEVVGNETRVKVVKNKVA 260

Query: 261 SPFKQVEFDIMYGEGISFFGEL 282
            PFKQ EFDIMYG GIS  GE+
Sbjct: 261 PPFKQAEFDIMYGSGISREGEI 282


>gi|56606857|gb|AAW02813.1| recombinase A [Mannheimia haemolytica]
 gi|56606859|gb|AAW02814.1| recombinase A [Mannheimia haemolytica]
 gi|56606861|gb|AAW02815.1| recombinase A [Mannheimia haemolytica]
 gi|56606863|gb|AAW02816.1| recombinase A [Mannheimia glucosida]
          Length = 270

 Score =  284 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 190/272 (69%), Positives = 229/272 (84%), Gaps = 2/272 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG   ++   IE VS+GSLGLD ALGIGG P GRIVEIYGPESSGKTTL L  +AQ+
Sbjct: 1   IMKLGDTQAL--DIEAVSTGSLGLDSALGIGGLPMGRIVEIYGPESSGKTTLTLSVVAQA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK G TCAF+DAEHALD IYARKLGVD   LLISQPD GEQALEI D LVRSGAVD+I++
Sbjct: 59  QKNGKTCAFIDAEHALDPIYARKLGVDTDGLLISQPDNGEQALEICDALVRSGAVDVIIV 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT++I  + C+++FINQ+RMKIGVMF
Sbjct: 119 DSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIKATNCLVIFINQIRMKIGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETTTGGNALKFY+SVRLDIRR G +KD D + G++T+VK+VKNK+A PF++V+FDIM
Sbjct: 179 GNPETTTGGNALKFYASVRLDIRRSGVVKDGDEVIGSETKVKIVKNKVAPPFREVQFDIM 238

Query: 272 YGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
           YGEGI+   EL+ L      ++K+GAWFS++G
Sbjct: 239 YGEGIARMNELLILAESHGFINKAGAWFSYEG 270


>gi|83319502|ref|YP_424522.1| recombinase A [Mycoplasma capricolum subsp. capricolum ATCC 27343]
 gi|83283388|gb|ABC01320.1| recA protein [Mycoplasma capricolum subsp. capricolum ATCC 27343]
          Length = 328

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 162/321 (50%), Positives = 233/321 (72%), Gaps = 2/321 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SK L+ A+ +I++++GKG+IM LG   ++   +E  SSGSL LD ALGIGG+PKGRI+EI
Sbjct: 4   SKELKEAIKEIEKMFGKGSIMVLGQSDNL--NVETFSSGSLLLDNALGIGGYPKGRIIEI 61

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL+LH I + QK GG  AF+DAEH+LD  Y   LG+D   LL+SQPD GEQ
Sbjct: 62  YGPESSGKTTLSLHAICEIQKLGGIAAFIDAEHSLDPKYCHNLGIDTNKLLVSQPDNGEQ 121

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           AL+I +ML+ S ++D+I++DSVAAL P+ E+EG+M +   G+QAR+MS+ALRKL   I++
Sbjct: 122 ALDILEMLINSNSIDLIIVDSVAALVPKTELEGEMSDQSIGLQARMMSKALRKLNGLIAK 181

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           S   ++FINQ+R KIGV+FG+PETTTGG ALKF+SS+RL++R+  +I     I GN+ ++
Sbjct: 182 SNTTVIFINQLREKIGVIFGNPETTTGGKALKFFSSIRLEVRKSENILSNSEIIGNKIKI 241

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           K+VKNK A PFK     ++Y +GI   GEL+DL V   I++KSG W+ ++ +++GQG+ +
Sbjct: 242 KIVKNKTAIPFKTATISLLYNKGIDKIGELVDLLVSYEIIEKSGVWYFYQNEKIGQGKTS 301

Query: 313 SKIFLRENIEIAENIESLLRQ 333
              +L  +      +   +++
Sbjct: 302 VIQWLNADENRTNELVQQVKK 322


>gi|290795103|gb|ADD64567.1| RecA recombinase [Vibrio tasmaniensis]
          Length = 268

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 187/270 (69%), Positives = 229/270 (84%), Gaps = 2/270 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D
Sbjct: 59  IAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAID 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAE 238

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGA 297
             I+YG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 TQILYGKGFNREGELIDLGVKNKLVEKAGA 268


>gi|125534156|gb|EAY80704.1| hypothetical protein OsI_35888 [Oryza sativa Indica Group]
          Length = 430

 Score =  283 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 174/365 (47%), Positives = 248/365 (67%), Gaps = 10/365 (2%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           D   E NI  K  AL+ AL QI+  +G+ +IM L +     + + V+S+GS  LD+ALGI
Sbjct: 58  DGYSEANIKKKDFALQQALDQIKSAFGEESIMWL-NHSYGPKEVPVISTGSFALDMALGI 116

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG PKGR+VEIYGPE+SGKTTLALH IA++QK GG CAF+DAEHALD   A  +GV  ++
Sbjct: 117 GGLPKGRVVEIYGPEASGKTTLALHIIAEAQKNGGYCAFIDAEHALDPTLAESIGVKAEH 176

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPD GEQAL + D+L+RSG++D++V+DSVAAL P+ E++G+MG++   +QARLMSQ
Sbjct: 177 LLLSQPDCGEQALGLADILIRSGSIDVVVVDSVAALVPKTELDGEMGDAHVALQARLMSQ 236

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGV---MFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           ALRKL+ S+SRS+ +LVFINQ+R K+          E T GGNALKFY+SVRL+ +R+G 
Sbjct: 237 ALRKLSHSLSRSRTMLVFINQVRSKLSTFSGFGAPAEVTCGGNALKFYASVRLNTKRIGL 296

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IK  + + G Q +VK+VKNK A PFK V  ++ +G+G+S   E+I+LG K   + KSG +
Sbjct: 297 IKKSEEVVGTQIQVKIVKNKHAPPFKTVHLELEFGKGLSRELEIIELGFKHKFITKSGVF 356

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           +   GQ    G++  K +L EN  + E++ S+++++         +       +DA+ D 
Sbjct: 357 YHLNGQNF-HGKDALKCYLAENKNVLESLMSMIKESI-----MQQESHPDRNMEDANPDT 410

Query: 359 TDNVE 363
           +   E
Sbjct: 411 SITEE 415


>gi|289524808|emb|CBJ94460.1| recA protein [Vibrio sp. Cmf 11.16]
          Length = 267

 Score =  283 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 183/269 (68%), Positives = 227/269 (84%), Gaps = 2/269 (0%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
           G   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +QK G
Sbjct: 1   GDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVG 58

Query: 96  GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
            TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VIDSVA
Sbjct: 59  KTCAFIDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVA 118

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
           ALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PE
Sbjct: 119 ALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPE 178

Query: 216 TTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275
           TTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I+YG+G
Sbjct: 179 TTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKG 238

Query: 276 ISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
            +  GELIDLGVK  +V+K+GAW+S+ G+
Sbjct: 239 FNREGELIDLGVKNKLVEKAGAWYSYNGE 267


>gi|464598|sp|P34716|RECA_ACIFA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|414338|dbj|BAA03975.1| RecA protein [Acidocella facilis]
          Length = 354

 Score =  283 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 191/315 (60%), Positives = 235/315 (74%), Gaps = 3/315 (0%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           A  QI+  +GKGA+M+ G +  I +  +V S+GSLGLD ALG GG P+GR+VEIYGPESS
Sbjct: 13  AFMQIEGQFGKGAVMRAGDKPGINDP-DVKSTGSLGLDGALGQGGLPRGRVVEIYGPESS 71

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTL L  IA +Q  G T AF DAEHALD  +A KLGV++K LLISQPDTGEQALEI D
Sbjct: 72  GKTTLTLKAIASAQAEGATPAFTDAEHALDPGFASKLGVNVKRLLISQPDTGEQALEIAD 131

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           ML RSGAVD+IV DSVAALTP+AEIEG+MG+S  G+ ARLMSQALR  T++ISR   +++
Sbjct: 132 MLFRSGAVDVIVKDSVAALTPKAEIEGEMGDSHQGLHARLMSQALRNKTANISRWNKLVI 191

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK-DSITGNQTRVKVVKN 257
           F  Q+RMK+GV +G PETTTGGNALKFY+SVRLDIRR+G++K          TRVKVVKN
Sbjct: 192 FKKQIRMKMGV-YGRPETTTGGNALKFYASVRLDIRRMGAMKKSATKSYDWSTRVKVVKN 250

Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317
           K+A PF+Q E  I YGEGI    E +DLGVK   V+KSG W+S+ G+R+GQG+ N++ +L
Sbjct: 251 KVAPPFRQAELAIYYGEGIYRGSEPVDLGVKLENVEKSGGWYSYPGRRIGQGKANARQYL 310

Query: 318 RENIEIAENIESLLR 332
           R   E     E  +R
Sbjct: 311 RVKPEFPGIFEQGIR 325


>gi|304564479|gb|ADM45103.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 267

 Score =  283 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 179/269 (66%), Positives = 227/269 (84%), Gaps = 2/269 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA
Sbjct: 1   GSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           ++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDII
Sbjct: 59  EAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDII 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GV
Sbjct: 119 VIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFD
Sbjct: 179 MFGNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFD 238

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IMYGEGIS  G ++D+G    I++KSGAW
Sbjct: 239 IMYGEGISREGSILDIGASIDIIEKSGAW 267


>gi|308377116|ref|ZP_07668435.1| putative protein RecA [Mycobacterium tuberculosis SUMu008]
 gi|308348909|gb|EFP37760.1| putative protein RecA [Mycobacterium tuberculosis SUMu008]
          Length = 714

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 173/301 (57%), Positives = 225/301 (74%), Gaps = 14/301 (4%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+ KALE A++QI++ YGKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GR
Sbjct: 4   TPDREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPD
Sbjct: 62  VIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T 
Sbjct: 122 TGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD  +  GN
Sbjct: 182 ALNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV--DKSG--------AW 298
           +TRVKVVKNK  +   +  FD + G       +++D      +V   K G        +W
Sbjct: 242 RTRVKVVKNKCLAEGTR-IFDPVTGT-THRIEDVVDGRKPIHVVAAAKDGTLHARPVVSW 299

Query: 299 F 299
           F
Sbjct: 300 F 300


>gi|42560956|ref|NP_975407.1| recombinase A [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|313665441|ref|YP_004047312.1| RecA protein [Mycoplasma leachii PG50]
 gi|60392995|sp|P62218|RECA_MYCMS RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|42492453|emb|CAE77049.1| recombination protein recA [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
 gi|301320959|gb|ADK69602.1| RecA protein [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
 gi|312949732|gb|ADR24328.1| RecA protein [Mycoplasma leachii PG50]
          Length = 345

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 165/332 (49%), Positives = 239/332 (71%), Gaps = 2/332 (0%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           D   + + +  SK L+ A+ +I++++GKG+IM LG   ++   +E  SSGSL LD ALGI
Sbjct: 10  DNNLKESQMWNSKELKEAIKEIEKMFGKGSIMVLGQSDNL--NVETFSSGSLLLDNALGI 67

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+PKGRI+EIYGPESSGKTTL+LH I + QK GG  AF+DAEH+LD  Y   LG+D   
Sbjct: 68  GGYPKGRIIEIYGPESSGKTTLSLHAICEIQKLGGIAAFIDAEHSLDPKYCHNLGIDTNK 127

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPD GEQAL+I +ML+ S ++D+I++DSVAAL P+ E+EG+M +   G+QAR+MS+
Sbjct: 128 LLVSQPDNGEQALDILEMLINSNSIDLIIVDSVAALVPKTELEGEMSDQSIGLQARMMSK 187

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKL   I++S   ++FINQ+R KIGV+FG+PETTTGG ALKF+SS+RL++R+  +I  
Sbjct: 188 ALRKLNGLIAKSNTTVIFINQLREKIGVIFGNPETTTGGKALKFFSSIRLEVRKSENILS 247

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
              I GN+ ++K+VKNK A PFK     ++Y +GI   GEL+DL V   IV+KSG W+S+
Sbjct: 248 NSEIIGNKIKIKIVKNKTAIPFKTATISLLYNKGIDKIGELVDLLVSYEIVEKSGVWYSY 307

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           + +++GQG+ +   +L  + +    +   +++
Sbjct: 308 QNEKIGQGKTSVIQWLNADEKRTNELIQQVKK 339


>gi|254551792|ref|ZP_05142239.1| DNA recombination protein RecA [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
          Length = 613

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 173/301 (57%), Positives = 225/301 (74%), Gaps = 14/301 (4%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+ KALE A++QI++ YGKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GR
Sbjct: 4   TPDREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPD
Sbjct: 62  VIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T 
Sbjct: 122 TGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD  +  GN
Sbjct: 182 ALNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV--DKSG--------AW 298
           +TRVKVVKNK  +   +  FD + G       +++D      +V   K G        +W
Sbjct: 242 RTRVKVVKNKCLAEGTR-IFDPVTGT-THRIEDVVDGRKPIHVVAAAKDGTLHARPVVSW 299

Query: 299 F 299
           F
Sbjct: 300 F 300


>gi|223934262|ref|ZP_03626191.1| recA protein [Streptococcus suis 89/1591]
 gi|223897076|gb|EEF63508.1| recA protein [Streptococcus suis 89/1591]
          Length = 313

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 168/300 (56%), Positives = 225/300 (75%), Gaps = 4/300 (1%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+
Sbjct: 1   PKGRIIEIYGPESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLL 60

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+R
Sbjct: 61  SQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMR 120

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---- 240
           KL +SI+++K + +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+D+R    IK    
Sbjct: 121 KLGASINKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVRGNTQIKGTGD 180

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
            KD   G +T+VK+VKNK+A PFK+   +IMYGEGIS  GELI++G    I+ K+GAW+S
Sbjct: 181 KKDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYS 240

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
           + G+++GQG EN+K FL +N  I + I+  +R + GL+    ++E A        ++  D
Sbjct: 241 YNGEKIGQGSENAKKFLADNPAIFDEIDRKIRVHYGLIEADGVEEVATEEAPVVAEEIQD 300


>gi|6694838|gb|AAF25423.1|AF214776_1 RecA protein [Arthrobacter sp. 'SMCC G964']
          Length = 260

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 170/259 (65%), Positives = 214/259 (82%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IEV+ +GS+ LD+ALGIGG P+GR++EIYGPESSGKTT+ALH +A +Q+ GG  AF+DA
Sbjct: 2   PIEVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQRAGGIAAFIDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD  YA KLGVD   LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEI
Sbjct: 62  EHALDPDYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEI 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EGDMG+S  G+QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG AL
Sbjct: 122 EGDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKAL 181

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+S+R+D+RR+ ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS  G +I
Sbjct: 182 KFYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQGISREGGII 241

Query: 284 DLGVKASIVDKSGAWFSFK 302
           D+GV+  I+ KSG+WF++ 
Sbjct: 242 DMGVEHGIIKKSGSWFTYD 260


>gi|115485181|ref|NP_001067734.1| Os11g0302700 [Oryza sativa Japonica Group]
 gi|62732800|gb|AAX94919.1| recA protein, putative [Oryza sativa Japonica Group]
 gi|77550150|gb|ABA92947.1| recA protein, expressed [Oryza sativa Japonica Group]
 gi|113644956|dbj|BAF28097.1| Os11g0302700 [Oryza sativa Japonica Group]
 gi|125576944|gb|EAZ18166.1| hypothetical protein OsJ_33715 [Oryza sativa Japonica Group]
 gi|215707257|dbj|BAG93717.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 430

 Score =  282 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 173/365 (47%), Positives = 248/365 (67%), Gaps = 10/365 (2%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           D   E NI  K  AL+ AL QI+  +G+ +IM L +     + + V+S+GS  LD+ALGI
Sbjct: 58  DGYSEANIKKKDFALQQALDQIKSAFGEESIMWL-NHSYGPKEVPVISTGSFALDMALGI 116

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG PKGR+VEIYGPE+SGKTTLALH IA++QK GG CAF+DAEHALD   A  +GV  ++
Sbjct: 117 GGLPKGRVVEIYGPEASGKTTLALHIIAEAQKNGGYCAFIDAEHALDPTLAESIGVKAEH 176

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPD GEQAL + D+L+RSG++D++V+DSVAAL P+ E++G+MG++   +QARLMSQ
Sbjct: 177 LLLSQPDCGEQALGLADILIRSGSIDVVVVDSVAALVPKTELDGEMGDAHVALQARLMSQ 236

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGV---MFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           ALRKL+ S+SRS+ +LVFINQ+R K+          E T GGNALKFY+SVRL+ +R+G 
Sbjct: 237 ALRKLSHSLSRSRTMLVFINQVRSKLSTFSGFGAPAEVTCGGNALKFYASVRLNTKRIGL 296

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IK  + + G Q +VK+VKNK A PFK V  ++ +G+G+S   E+I++G K   + KSG +
Sbjct: 297 IKKSEEVVGTQIQVKIVKNKHAPPFKTVHLELEFGKGLSRELEIIEVGFKHKFITKSGVF 356

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           +   GQ    G++  K +L EN  + E++ S+++++         +       +DA+ D 
Sbjct: 357 YHLNGQNF-HGKDALKCYLAENKNVLESLMSMIKESI-----MQQESHPDRNMEDANPDT 410

Query: 359 TDNVE 363
           +   E
Sbjct: 411 SITEE 415


>gi|26554091|ref|NP_758025.1| recombinase A [Mycoplasma penetrans HF-2]
 gi|30316229|sp|Q8EVC7|RECA_MYCPE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|26454099|dbj|BAC44429.1| recombination protein RecA [Mycoplasma penetrans HF-2]
          Length = 329

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 149/325 (45%), Positives = 219/325 (67%), Gaps = 5/325 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           MN + + KALE A+ +I++ +GK       SQ   F+  +V+ SGS+ LD A+G+GG+PK
Sbjct: 1   MNSMTEQKALELAIKEIEKKFGKETF----SQSESFDN-QVIKSGSILLDNAIGVGGYPK 55

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           G+I+EIYG ESSGKTT+AL  + +  K GG+ A++DAE ++DS Y   LG+D   LL++ 
Sbjct: 56  GKIIEIYGNESSGKTTIALQCVKECIKEGGSVAYIDAECSIDSKYLSHLGIDPTKLLVAT 115

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P+ GEQA  I D L+++  VD+IV+DSVAAL P+ +IE  M +   G  AR+MS+ L+ L
Sbjct: 116 PEYGEQAFSIIDALIKTNMVDLIVVDSVAALVPKNDIESSMEDQSMGTHARMMSKGLKIL 175

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
            +S+S+ K  ++FINQ+R KIGVMFG+ E TTGG ALKF+S++RLD+RR   IK    + 
Sbjct: 176 QTSLSKHKTTVIFINQVREKIGVMFGNNEITTGGRALKFFSTLRLDVRRSELIKSGTDVI 235

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G ++++ V KNK+A PFK    DI + +G     E+ID  ++  I+ KSG+WF +   +L
Sbjct: 236 GIRSKITVTKNKVAPPFKNCFVDIFFNKGFDPTKEIIDFAIEYEIIKKSGSWFYYNETKL 295

Query: 307 GQGRENSKIFLRENIEIAENIESLL 331
            QGR N   +L+EN EI + I+ L+
Sbjct: 296 AQGRNNLDSYLKENNEIYDEIKKLV 320


>gi|42569151|ref|NP_179539.2| recA family protein [Arabidopsis thaliana]
 gi|209572665|sp|Q9ZUP2|RECA3_ARATH RecName: Full=DNA repair protein recA homolog 3, mitochondrial;
           AltName: Full=Recombinase A homolog 3; Flags: Precursor
 gi|119935859|gb|ABM06015.1| At2g19490 [Arabidopsis thaliana]
 gi|330251794|gb|AEC06888.1| DNA repair protein recA-like 3 [Arabidopsis thaliana]
          Length = 430

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 177/347 (51%), Positives = 243/347 (70%), Gaps = 7/347 (2%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +   E  +  K  AL+ AL QI   +GKG+IM LG +      + V S+GS  LD+ALG+
Sbjct: 48  NGSSEEGMSKKEIALQQALDQITSSFGKGSIMYLG-RAVSPRNVPVFSTGSFALDVALGV 106

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG PKGR+VEIYGPE+SGKTTLALH IA++QK GGTC FVDAEHALDS  A+ +GV+ +N
Sbjct: 107 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQKQGGTCVFVDAEHALDSSLAKAIGVNTEN 166

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPD GEQAL + D L+RSG+VD+IV+DSVAAL P+ E+EG+MG++   MQARLMSQ
Sbjct: 167 LLLSQPDCGEQALSLVDTLIRSGSVDVIVVDSVAALVPKGELEGEMGDAHMAMQARLMSQ 226

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGV---MFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           ALRKL+ S+S S+ +L+FINQ+R K+       G  E T GGNALKFY+S+RL+I+R+G 
Sbjct: 227 ALRKLSHSLSLSQTLLIFINQVRSKLSTFGGFGGPTEVTCGGNALKFYASMRLNIKRIGL 286

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IK  +  TG+Q  VK+VKNK+A PF+  +F++ +G+GI    E+IDL +K   + K+G +
Sbjct: 287 IKKGEETTGSQVSVKIVKNKLAPPFRTAQFELEFGKGICKITEIIDLSIKHKFIAKNGTF 346

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
           ++  G+    G+E  K FL++N    E +   L+    L+AD    +
Sbjct: 347 YNLNGKN-YHGKEALKRFLKQNESDQEELMKKLQDK--LIADEAADK 390


>gi|54792156|emb|CAE54394.1| recombination-repair protein [Photobacterium leiognathi]
 gi|58415359|emb|CAH57094.1| recA protein [Photobacterium leiognathi subsp. leiognathi]
          Length = 263

 Score =  282 bits (720), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 181/265 (68%), Positives = 225/265 (84%), Gaps = 2/265 (0%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           L QI++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGPESSG
Sbjct: 1   LGQIEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 58

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTL L TIA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D 
Sbjct: 59  KTTLTLETIAAAQRKGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEICDA 118

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +F
Sbjct: 119 LARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIF 178

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           INQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+
Sbjct: 179 INQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKI 238

Query: 260 ASPFKQVEFDIMYGEGISFFGELID 284
           A+PFKQ +  I+YG+G +  GEL+D
Sbjct: 239 AAPFKQADTQILYGQGFNRNGELVD 263


>gi|290795105|gb|ADD64568.1| RecA recombinase [Vibrio splendidus]
 gi|290795107|gb|ADD64569.1| RecA recombinase [Vibrio splendidus]
          Length = 267

 Score =  281 bits (719), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 185/269 (68%), Positives = 228/269 (84%), Gaps = 2/269 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  I
Sbjct: 1   KGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D+
Sbjct: 59  AAAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG
Sbjct: 119 LVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E 
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAET 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGA 297
            I+YG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 QILYGKGFNREGELIDLGVKNKLVEKAGA 267


>gi|6694832|gb|AAF25417.1|AF214770_1 RecA protein [Arthrobacter sp. 'SMCC ZAT013']
          Length = 260

 Score =  281 bits (719), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 170/259 (65%), Positives = 214/259 (82%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DA
Sbjct: 2   PIEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD  YA KLGVD   LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEI
Sbjct: 62  EHALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEI 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EGDMG+S  G+QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG AL
Sbjct: 122 EGDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKAL 181

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+S+R+D+RR+ ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS  G +I
Sbjct: 182 KFYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQGISREGGII 241

Query: 284 DLGVKASIVDKSGAWFSFK 302
           D+GV+  ++ KSG+WF++ 
Sbjct: 242 DMGVEHGLIKKSGSWFTYD 260


>gi|22203527|gb|AAM92266.1| RecA [Bordetella avium]
          Length = 283

 Score =  281 bits (719), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 197/263 (74%), Positives = 231/263 (87%), Gaps = 1/263 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+ G    +   I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT
Sbjct: 22  QIEKQFGKGSIMRYGDN-EVEHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 80

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGTCAFVDAEHALD  YA KLGV+L +LLISQPDTGEQALEITD LV
Sbjct: 81  TLTLQVIAEMQKVGGTCAFVDAEHALDVQYASKLGVNLGDLLISQPDTGEQALEITDALV 140

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG+VD+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT++I R+ C+++FIN
Sbjct: 141 RSGSVDLIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTATIKRTNCMVIFIN 200

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK+A 
Sbjct: 201 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKGDEVVGNETRVKVVKNKVAP 260

Query: 262 PFKQVEFDIMYGEGISFFGELID 284
           PFKQ EFDIMYG GIS  GE+ID
Sbjct: 261 PFKQAEFDIMYGAGISREGEIID 283


>gi|58415580|emb|CAH57204.1| recA protein [Vibrio navarrensis]
          Length = 265

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 196/267 (73%), Positives = 229/267 (85%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           AIM+LG   ++   IE +S+GSL +DIALGIGG P GR+VEIYGPESSGKTTL L  IA+
Sbjct: 1   AIMRLGDNQAM--DIEAISTGSLSIDIALGIGGLPCGRVVEIYGPESSGKTTLTLQVIAE 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAFVDAEHALD +YA KLGV + +LL+SQPDTGEQALEI DMLVRSGAVD+++
Sbjct: 59  AQKKGKTCAFVDAEHALDPVYAEKLGVSIDDLLVSQPDTGEQALEICDMLVRSGAVDVVI 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT +I RS  + +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTGNIKRSNTLCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFYSSVRLDIRR+G++KD D + GN+TRVKVVKNK+A PFKQ EF I
Sbjct: 179 FGNPETTTGGNALKFYSSVRLDIRRIGAVKDGDEVVGNETRVKVVKNKVAPPFKQAEFQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYGEGIS   ELIDLGVK  +VDK+GA
Sbjct: 239 MYGEGISKEAELIDLGVKQKLVDKAGA 265


>gi|290795119|gb|ADD64575.1| RecA recombinase [Vibrio sp. F6]
          Length = 260

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 179/260 (68%), Positives = 224/260 (86%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DA
Sbjct: 1   DVETISTGSLALDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQRVGKTCAFIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEI
Sbjct: 61  EHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 121 EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GELI
Sbjct: 181 KFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELI 240

Query: 284 DLGVKASIVDKSGAWFSFKG 303
           DLGVK  +V+K+GAW+S++G
Sbjct: 241 DLGVKNKLVEKAGAWYSYQG 260


>gi|148536412|gb|ABQ85758.1| RecA [Photobacterium iliopiscarium]
          Length = 267

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 186/269 (69%), Positives = 228/269 (84%), Gaps = 2/269 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMKLGDNKTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            I+ +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGAV
Sbjct: 59  VISAAQKQGKTCAFIDAEHALDPIYAQKLGVDINELLVSQPDTGEQALEIVDALARSGAV 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKS 295
           E  I+YG+G +  GELIDLGVK  +V+K+
Sbjct: 239 ETQILYGQGFNRNGELIDLGVKNKLVEKA 267


>gi|58415642|emb|CAH57235.1| recA protein [Vibrio scophthalmi]
          Length = 265

 Score =  281 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 180/267 (67%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIKD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GEL+DLGVK  +++K+GA
Sbjct: 239 LYGQGFNREGELVDLGVKHKLIEKAGA 265


>gi|215271640|emb|CAR57853.1| recombination-repair protein [Vibrio campbellii]
          Length = 267

 Score =  281 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 181/269 (67%), Positives = 227/269 (84%), Gaps = 2/269 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG
Sbjct: 119 MVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+   
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANT 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGA 297
            IMYG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 QIMYGQGFNREGELIDLGVKHKLVEKAGA 267


>gi|15150378|gb|AAK85426.1| RecA [Bordetella bronchiseptica]
 gi|15150380|gb|AAK85427.1| RecA [Bordetella pertussis]
          Length = 278

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 192/258 (74%), Positives = 227/258 (87%), Gaps = 1/258 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           SQI++ +GKG+IM+ G    +   I+VVS+GSLGLDIALG+GG P+GR++E+YGPESSGK
Sbjct: 22  SQIEKQFGKGSIMRYGDN-EVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEVYGPESSGK 80

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA+ QK GGTCAFVDAEHALD  YA KLGV+L +LLISQPDTGEQALEITD L
Sbjct: 81  TTLTLQVIAEMQKLGGTCAFVDAEHALDVQYASKLGVNLTDLLISQPDTGEQALEITDAL 140

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT++I R+ C+++FI
Sbjct: 141 VRSGSVDLIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFI 200

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK  D + GN+TRVKVVKNK+A
Sbjct: 201 NQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKKGDEVVGNETRVKVVKNKVA 260

Query: 261 SPFKQVEFDIMYGEGISF 278
            PFKQ EFDIMYG GIS 
Sbjct: 261 PPFKQAEFDIMYGSGISR 278


>gi|148878991|emb|CAM07011.1| RecA protein [Mycobacterium sp. MG4]
          Length = 259

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 174/258 (67%), Positives = 218/258 (84%)

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQ
Sbjct: 1   GRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKLGVDTDSLLVSQ 60

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI DMLVRSGA+ ++VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 61  PDTGEQALEIADMLVRSGAISLLVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKM 120

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T +++ S    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD     
Sbjct: 121 TGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAV 180

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+TRVKVVKNK++ PFKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++L
Sbjct: 181 GNRTRVKVVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQL 240

Query: 307 GQGRENSKIFLRENIEIA 324
           GQG+EN++ FL EN+++A
Sbjct: 241 GQGKENARNFLLENVDVA 258


>gi|254232836|ref|ZP_04926163.1| recA protein (recombinase A) [Mycobacterium tuberculosis C]
 gi|124601895|gb|EAY60905.1| recA protein (recombinase A) [Mycobacterium tuberculosis C]
          Length = 790

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 173/301 (57%), Positives = 225/301 (74%), Gaps = 14/301 (4%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+ KALE A++QI++ YGKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GR
Sbjct: 4   TPDREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPD
Sbjct: 62  VIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T 
Sbjct: 122 TGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD  +  GN
Sbjct: 182 ALNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV--DKSG--------AW 298
           +TRVKVVKNK  +   +  FD + G       +++D      +V   K G        +W
Sbjct: 242 RTRVKVVKNKCLAEGTR-IFDPVTGT-THRIEDVVDGRKPIHVVAAAKDGTLHARPVVSW 299

Query: 299 F 299
           F
Sbjct: 300 F 300



 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/86 (50%), Positives = 65/86 (75%)

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VV +  + PFKQ EFDI+YG+GIS  G LID+GV   ++ KSGAWF+++G++LGQG+EN+
Sbjct: 687 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENA 746

Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339
           + FL EN ++A+ IE  +++  G+ A
Sbjct: 747 RNFLVENADVADEIEKKIKEKLGIGA 772


>gi|2598000|emb|CAA03857.1| RecA protein [Mycobacterium tuberculosis]
 gi|2598002|emb|CAA03856.1| RecA protein [Mycobacterium tuberculosis]
          Length = 790

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 173/301 (57%), Positives = 225/301 (74%), Gaps = 14/301 (4%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+ KALE A++QI++ YGKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GR
Sbjct: 4   TPDREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPD
Sbjct: 62  VIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T 
Sbjct: 122 TGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD  +  GN
Sbjct: 182 ALNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV--DKSG--------AW 298
           +TRVKVVKNK  +   +  FD + G       +++D      +V   K G        +W
Sbjct: 242 RTRVKVVKNKCLAEGTR-IFDPVTGT-THRIEDVVDGRKPIHVVAAAKDGTLHARPVVSW 299

Query: 299 F 299
           F
Sbjct: 300 F 300



 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/86 (50%), Positives = 65/86 (75%)

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VV +  + PFKQ EFDI+YG+GIS  G LID+GV   ++ KSGAWF+++G++LGQG+EN+
Sbjct: 687 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENA 746

Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339
           + FL EN ++A+ IE  +++  G+ A
Sbjct: 747 RNFLVENADVADEIEKKIKEKLGIGA 772


>gi|215271638|emb|CAR57852.1| recombination-repair protein [Vibrio campbellii]
          Length = 267

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 181/269 (67%), Positives = 226/269 (84%), Gaps = 2/269 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD +YA KLGVD+  LL+SQPDTGEQALEI D L RSGA+D+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPVYAMKLGVDIDALLVSQPDTGEQALEICDALARSGAIDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG
Sbjct: 119 MVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+   
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANT 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGA 297
            IMYG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 QIMYGQGFNREGELIDLGVKHKLVEKAGA 267


>gi|162424779|gb|ABX90067.1| RecA protein [Burkholderia sp. DPU-3]
          Length = 267

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 195/268 (72%), Positives = 237/268 (88%), Gaps = 1/268 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G++M+LG QG   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A
Sbjct: 1   GSVMRLG-QGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA+KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+I
Sbjct: 60  EMQKLGGTAAFIDAEHALDIQYAQKLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGA 297
           I+YGEGIS  GE+IDLGV+A IVDK+GA
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGA 267


>gi|260187752|ref|ZP_05765226.1| DNA recombination protein RecA [Mycobacterium tuberculosis CPHL_A]
 gi|289448392|ref|ZP_06438136.1| recombination protein recA [Mycobacterium tuberculosis CPHL_A]
 gi|289421350|gb|EFD18551.1| recombination protein recA [Mycobacterium tuberculosis CPHL_A]
          Length = 790

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 173/301 (57%), Positives = 225/301 (74%), Gaps = 14/301 (4%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+ KALE A++QI++ YGKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GR
Sbjct: 4   TPDREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPD
Sbjct: 62  VIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T 
Sbjct: 122 TGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD  +  GN
Sbjct: 182 ALNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV--DKSG--------AW 298
           +TRVKVVKNK  +   +  FD + G       +++D      +V   K G        +W
Sbjct: 242 RTRVKVVKNKCLAEGTR-IFDPVTGT-THRIEDVVDGRKPIHVVAAAKDGTLHARPVVSW 299

Query: 299 F 299
           F
Sbjct: 300 F 300



 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/86 (50%), Positives = 65/86 (75%)

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VV +  + PFKQ EFDI+YG+GIS  G LID+GV   ++ KSGAWF+++G++LGQG+EN+
Sbjct: 687 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENA 746

Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339
           + FL EN ++A+ IE  +++  G+ A
Sbjct: 747 RNFLVENADVADEIEKKIKEKLGIGA 772


>gi|99034602|ref|ZP_01314562.1| hypothetical protein Wendoof_01000622 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 292

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 187/285 (65%), Positives = 237/285 (83%)

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRI+EI+GPESSGKTTLALH IA++QK GG+CAF+DAEHALD +YARKLGV   +L+IS
Sbjct: 1   KGRIIEIFGPESSGKTTLALHVIAEAQKKGGSCAFIDAEHALDVLYARKLGVSTDDLVIS 60

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQAL I + LV SGAVD+IVIDSVAALTPRAEIEGDMG+   G+QARL+S  LRK
Sbjct: 61  QPDTGEQALHIVEYLVCSGAVDVIVIDSVAALTPRAEIEGDMGDQHMGLQARLLSHGLRK 120

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           LTS++S++ CIL+FINQ+RMKIGV++G+PETTTGGNALKFY+SVRLDIR+VG IKDK++I
Sbjct: 121 LTSAVSKANCILIFINQIRMKIGVVYGNPETTTGGNALKFYTSVRLDIRKVGVIKDKENI 180

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           TGN+TRVKVVKNK+A PF++ +FDIMY EGIS  GE+ID+G K  +++K+GA++S+   R
Sbjct: 181 TGNETRVKVVKNKVAPPFREAKFDIMYNEGISKLGEIIDMGAKLGVLEKAGAYYSYNNTR 240

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
           LGQGREN K +L+ N E+A  IE+ +R       +S++ +     
Sbjct: 241 LGQGRENVKTYLKTNKEVANEIETKIRDLLRNHDNSIIIDEDSEQ 285


>gi|215431673|ref|ZP_03429592.1| recombinase A [Mycobacterium tuberculosis EAS054]
 gi|289754840|ref|ZP_06514218.1| recombinase A [Mycobacterium tuberculosis EAS054]
 gi|289695427|gb|EFD62856.1| recombinase A [Mycobacterium tuberculosis EAS054]
          Length = 790

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 173/301 (57%), Positives = 225/301 (74%), Gaps = 14/301 (4%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+ KALE A++QI++ YGKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GR
Sbjct: 4   TPDREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPD
Sbjct: 62  VIEIYGPESSGKTTVALHAVANAQDAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T 
Sbjct: 122 TGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD  +  GN
Sbjct: 182 ALNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV--DKSG--------AW 298
           +TRVKVVKNK  +   +  FD + G       +++D      +V   K G        +W
Sbjct: 242 RTRVKVVKNKCLAEGTR-IFDPVTGT-THRIEDVVDGRKPIHVVAAAKDGTLHARPVVSW 299

Query: 299 F 299
           F
Sbjct: 300 F 300



 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/86 (50%), Positives = 65/86 (75%)

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VV +  + PFKQ EFDI+YG+GIS  G LID+GV   ++ KSGAWF+++G++LGQG+EN+
Sbjct: 687 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENA 746

Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339
           + FL EN ++A+ IE  +++  G+ A
Sbjct: 747 RNFLVENADVADEIEKKIKEKLGIGA 772


>gi|260206044|ref|ZP_05773535.1| DNA recombination protein RecA [Mycobacterium tuberculosis K85]
 gi|289575434|ref|ZP_06455661.1| recombination protein recA [Mycobacterium tuberculosis K85]
 gi|289539865|gb|EFD44443.1| recombination protein recA [Mycobacterium tuberculosis K85]
          Length = 790

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 173/301 (57%), Positives = 225/301 (74%), Gaps = 14/301 (4%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+ KALE A++QI++ YGKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GR
Sbjct: 4   TPDREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPD
Sbjct: 62  VIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T 
Sbjct: 122 TGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD  +  GN
Sbjct: 182 ALNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV--DKSG--------AW 298
           +TRVKVVKNK  +   +  FD + G       +++D      +V   K G        +W
Sbjct: 242 RTRVKVVKNKCLAEGTR-IFDPVTGT-THRIEDVVDGRKPIHVVAAAKDGTLHARPVVSW 299

Query: 299 F 299
           F
Sbjct: 300 F 300



 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/86 (50%), Positives = 65/86 (75%)

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VV +  + PFKQ EFDI+YG+GIS  G LID+GV   ++ KSGAWF+++G++LGQG+EN+
Sbjct: 687 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENA 746

Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339
           + FL EN ++A+ IE  +++  G+ A
Sbjct: 747 RNFLVENADVADEIEKKIKEKLGIGA 772


>gi|260201861|ref|ZP_05769352.1| DNA recombination protein RecA [Mycobacterium tuberculosis T46]
 gi|289444279|ref|ZP_06434023.1| recombination protein recA [Mycobacterium tuberculosis T46]
 gi|289417198|gb|EFD14438.1| recombination protein recA [Mycobacterium tuberculosis T46]
          Length = 790

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 173/301 (57%), Positives = 225/301 (74%), Gaps = 14/301 (4%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+ KALE A++QI++ YGKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GR
Sbjct: 4   TPDREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPD
Sbjct: 62  VIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T 
Sbjct: 122 TGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD  +  GN
Sbjct: 182 ALNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV--DKSG--------AW 298
           +TRVKVVKNK  +   +  FD + G       +++D      +V   K G        +W
Sbjct: 242 RTRVKVVKNKCLAEGTR-IFDPVTGT-THRIEDVVDGRKPIHVVAAAKDGTLHARPVVSW 299

Query: 299 F 299
           F
Sbjct: 300 F 300



 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/86 (50%), Positives = 65/86 (75%)

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VV +  + PFKQ EFDI+YG+GIS  G LID+GV   ++ KSGAWF+++G++LGQG+EN+
Sbjct: 687 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENA 746

Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339
           + FL EN ++A+ IE  +++  G+ A
Sbjct: 747 RNFLVENADVADEIEKKIKEKLGIGA 772


>gi|15609874|ref|NP_217253.1| DNA recombination protein RecA [Mycobacterium tuberculosis H37Rv]
 gi|15842276|ref|NP_337313.1| DNA recombination protein RecA [Mycobacterium tuberculosis CDC1551]
 gi|31793909|ref|NP_856402.1| DNA recombination protein RecA [Mycobacterium bovis AF2122/97]
 gi|121638612|ref|YP_978836.1| DNA recombination protein RecA [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148662578|ref|YP_001284101.1| DNA recombination protein RecA [Mycobacterium tuberculosis H37Ra]
 gi|148823925|ref|YP_001288679.1| recombinase A [Mycobacterium tuberculosis F11]
 gi|215404700|ref|ZP_03416881.1| recombinase A [Mycobacterium tuberculosis 02_1987]
 gi|215412541|ref|ZP_03421275.1| recombinase A [Mycobacterium tuberculosis 94_M4241A]
 gi|218754471|ref|ZP_03533267.1| recombinase A [Mycobacterium tuberculosis GM 1503]
 gi|224991104|ref|YP_002645793.1| recombinase A [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253798182|ref|YP_003031183.1| recombination protein recA [Mycobacterium tuberculosis KZN 1435]
 gi|254365391|ref|ZP_04981436.1| recA protein (recombinase A) [Mycobacterium tuberculosis str.
           Haarlem]
 gi|289553479|ref|ZP_06442689.1| recombination protein recA [Mycobacterium tuberculosis KZN 605]
 gi|289746539|ref|ZP_06505917.1| recombinase A [Mycobacterium tuberculosis 02_1987]
 gi|289762908|ref|ZP_06522286.1| recA protein (recombinase A) [Mycobacterium tuberculosis GM 1503]
 gi|294994174|ref|ZP_06799865.1| DNA recombination protein RecA [Mycobacterium tuberculosis 210]
 gi|297635343|ref|ZP_06953123.1| DNA recombination protein RecA [Mycobacterium tuberculosis KZN
           4207]
 gi|297732339|ref|ZP_06961457.1| DNA recombination protein RecA [Mycobacterium tuberculosis KZN
           R506]
 gi|298526206|ref|ZP_07013615.1| recA protein, intein-containing [Mycobacterium tuberculosis
           94_M4241A]
 gi|306777014|ref|ZP_07415351.1| recombination protein recA [Mycobacterium tuberculosis SUMu001]
 gi|306780917|ref|ZP_07419254.1| recombination protein recA [Mycobacterium tuberculosis SUMu002]
 gi|306785543|ref|ZP_07423865.1| recombination protein recA [Mycobacterium tuberculosis SUMu003]
 gi|306790139|ref|ZP_07428461.1| recombination protein recA [Mycobacterium tuberculosis SUMu004]
 gi|306794222|ref|ZP_07432524.1| recombination protein recA [Mycobacterium tuberculosis SUMu005]
 gi|306798640|ref|ZP_07436942.1| recombination protein recA [Mycobacterium tuberculosis SUMu006]
 gi|306807464|ref|ZP_07444132.1| recombination protein recA [Mycobacterium tuberculosis SUMu007]
 gi|306968795|ref|ZP_07481456.1| recombination protein recA [Mycobacterium tuberculosis SUMu009]
 gi|306973129|ref|ZP_07485790.1| recombination protein recA [Mycobacterium tuberculosis SUMu010]
 gi|307080838|ref|ZP_07490008.1| recombination protein recA [Mycobacterium tuberculosis SUMu011]
 gi|307085430|ref|ZP_07494543.1| recombination protein recA [Mycobacterium tuberculosis SUMu012]
 gi|313659672|ref|ZP_07816552.1| DNA recombination protein RecA [Mycobacterium tuberculosis KZN
           V2475]
 gi|61230236|sp|P0A5U4|RECA_MYCTU RecName: Full=Protein RecA; AltName: Full=Recombinase A; Contains:
           RecName: Full=Endonuclease PI-MtuI; AltName: Full=Mtu
           RecA intein
 gi|61230237|sp|P0A5U5|RECA_MYCBO RecName: Full=Protein RecA; AltName: Full=Recombinase A; Contains:
           RecName: Full=Endonuclease PI-MboI; AltName: Full=Mbo
           RecA intein
 gi|44662|emb|CAA41395.1| RecA [Mycobacterium tuberculosis H37Rv]
 gi|2624258|emb|CAA15533.1| RECA PROTEIN (RECOMBINASE A) [CONTAINS: ENDONUCLEASE PI-MTUI (MTU
           RECA INTEIN)] [Mycobacterium tuberculosis H37Rv]
 gi|13882569|gb|AAK47127.1| recA protein, intein-containing [Mycobacterium tuberculosis
           CDC1551]
 gi|31619503|emb|CAD94941.1| RECA PROTEIN (RECOMBINASE A) [CONTAINS: ENDONUCLEASE PI-MTUI (MTU
           RECA INTEIN)] [Mycobacterium bovis AF2122/97]
 gi|121494260|emb|CAL72738.1| RecA protein [contains: endonuclease pi-mtui [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|134150904|gb|EBA42949.1| recA protein (recombinase A) [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506730|gb|ABQ74539.1| RecA protein [Mycobacterium tuberculosis H37Ra]
 gi|148722452|gb|ABR07077.1| recombinase A recA [Mycobacterium tuberculosis F11]
 gi|224774219|dbj|BAH27025.1| recombinase A [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253319685|gb|ACT24288.1| recombination protein recA [Mycobacterium tuberculosis KZN 1435]
 gi|289438111|gb|EFD20604.1| recombination protein recA [Mycobacterium tuberculosis KZN 605]
 gi|289687067|gb|EFD54555.1| recombinase A [Mycobacterium tuberculosis 02_1987]
 gi|289710414|gb|EFD74430.1| recA protein (recombinase A) [Mycobacterium tuberculosis GM 1503]
 gi|298496000|gb|EFI31294.1| recA protein, intein-containing [Mycobacterium tuberculosis
           94_M4241A]
 gi|308214671|gb|EFO74070.1| recombination protein recA [Mycobacterium tuberculosis SUMu001]
 gi|308326315|gb|EFP15166.1| recombination protein recA [Mycobacterium tuberculosis SUMu002]
 gi|308329796|gb|EFP18647.1| recombination protein recA [Mycobacterium tuberculosis SUMu003]
 gi|308333416|gb|EFP22267.1| recombination protein recA [Mycobacterium tuberculosis SUMu004]
 gi|308337482|gb|EFP26333.1| recombination protein recA [Mycobacterium tuberculosis SUMu005]
 gi|308341154|gb|EFP30005.1| recombination protein recA [Mycobacterium tuberculosis SUMu006]
 gi|308346059|gb|EFP34910.1| recombination protein recA [Mycobacterium tuberculosis SUMu007]
 gi|308353681|gb|EFP42532.1| recombination protein recA [Mycobacterium tuberculosis SUMu009]
 gi|308357528|gb|EFP46379.1| recombination protein recA [Mycobacterium tuberculosis SUMu010]
 gi|308361425|gb|EFP50276.1| recombination protein recA [Mycobacterium tuberculosis SUMu011]
 gi|308365077|gb|EFP53928.1| recombination protein recA [Mycobacterium tuberculosis SUMu012]
 gi|323718665|gb|EGB27828.1| recombination protein recA [Mycobacterium tuberculosis CDC1551A]
 gi|326904352|gb|EGE51285.1| recombination protein recA [Mycobacterium tuberculosis W-148]
 gi|328457955|gb|AEB03378.1| recombination protein recA [Mycobacterium tuberculosis KZN 4207]
          Length = 790

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 173/301 (57%), Positives = 225/301 (74%), Gaps = 14/301 (4%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+ KALE A++QI++ YGKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GR
Sbjct: 4   TPDREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPD
Sbjct: 62  VIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T 
Sbjct: 122 TGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD  +  GN
Sbjct: 182 ALNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV--DKSG--------AW 298
           +TRVKVVKNK  +   +  FD + G       +++D      +V   K G        +W
Sbjct: 242 RTRVKVVKNKCLAEGTR-IFDPVTGT-THRIEDVVDGRKPIHVVAAAKDGTLHARPVVSW 299

Query: 299 F 299
           F
Sbjct: 300 F 300



 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/86 (50%), Positives = 65/86 (75%)

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VV +  + PFKQ EFDI+YG+GIS  G LID+GV   ++ KSGAWF+++G++LGQG+EN+
Sbjct: 687 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENA 746

Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339
           + FL EN ++A+ IE  +++  G+ A
Sbjct: 747 RNFLVENADVADEIEKKIKEKLGIGA 772


>gi|58415604|emb|CAH57216.1| recA protein [Vibrio pacinii]
          Length = 265

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 183/267 (68%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIKD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 LYGQGFNREGELIDLGVKHKLVEKAGA 265


>gi|58415622|emb|CAH57225.1| recA protein [Vibrio penaeicida]
          Length = 265

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 184/267 (68%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIKD D I GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEIVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 MYGQGFNREGELIDLGVKHKLVEKAGA 265


>gi|58415686|emb|CAH57257.1| recA protein [Vibrio xuii]
          Length = 265

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 180/267 (67%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GELIDLGVK  +++KSGA
Sbjct: 239 LYGQGFNREGELIDLGVKHKLIEKSGA 265


>gi|58415612|emb|CAH57220.1| recA protein [Vibrio pectenicida]
 gi|58415614|emb|CAH57221.1| recA protein [Vibrio pectenicida]
 gi|58415616|emb|CAH57222.1| recA protein [Vibrio pectenicida]
          Length = 265

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 182/267 (68%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIKD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYG+G +  GELIDLGVK  +++K+GA
Sbjct: 239 MYGQGFNREGELIDLGVKHKLIEKAGA 265


>gi|58415457|emb|CAH57143.1| recA protein [Vibrio ezurae]
 gi|58415459|emb|CAH57144.1| recA protein [Vibrio ezurae]
 gi|58415461|emb|CAH57145.1| recA protein [Vibrio ezurae]
 gi|58415582|emb|CAH57205.1| recA protein [Vibrio neonatus]
 gi|58415584|emb|CAH57206.1| recA protein [Vibrio neonatus]
          Length = 265

 Score =  280 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 181/267 (67%), Positives = 227/267 (85%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLALDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGV++ +LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPIYAQKLGVNIDSLLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IKD D I GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEIVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYG+G +  GELIDLGVK  +++K+GA
Sbjct: 239 MYGQGFNREGELIDLGVKHKLIEKAGA 265


>gi|146317724|ref|YP_001197436.1| RecA/RadA recombinase [Streptococcus suis 05ZYH33]
 gi|145688530|gb|ABP89036.1| RecA/RadA recombinase [Streptococcus suis 05ZYH33]
          Length = 321

 Score =  280 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 167/299 (55%), Positives = 224/299 (74%), Gaps = 4/299 (1%)

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+S
Sbjct: 10  KGRIIEIYGPESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLS 69

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RK
Sbjct: 70  QPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRK 129

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----D 241
           L +SI+++K + +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+D+R    IK     
Sbjct: 130 LGASINKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVRGNTQIKGTGDK 189

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
           KD   G +T+VK+VKNK+A PFK+   +IMYGEGIS  GELI++G    I+ K+GAW+S+
Sbjct: 190 KDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSY 249

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
            G+++GQG EN+K FL +N  I + I+  +R + GL+    ++E A        ++  D
Sbjct: 250 NGEKIGQGSENAKKFLADNPAIFDEIDRKIRVHYGLIEADGVEEVATEEAPVVAEEIQD 308


>gi|58415524|emb|CAH57176.1| recA protein [Vibrio ichthyoenteri]
 gi|58415526|emb|CAH57177.1| recA protein [Vibrio ichthyoenteri]
 gi|58415528|emb|CAH57178.1| recA protein [Vibrio ichthyoenteri]
          Length = 265

 Score =  280 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 179/267 (67%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GEL+DLGVK  +++K+GA
Sbjct: 239 LYGQGFNREGELVDLGVKHKLIEKAGA 265


>gi|58415548|emb|CAH57188.1| recA protein [Vibrio mediterranei]
 gi|58415550|emb|CAH57189.1| recA protein [Vibrio mediterranei]
 gi|58415552|emb|CAH57190.1| recA protein [Vibrio mediterranei]
 gi|58415554|emb|CAH57191.1| recA protein [Vibrio mediterranei]
 gi|58415556|emb|CAH57192.1| recA protein [Vibrio mediterranei]
 gi|58415558|emb|CAH57193.1| recA protein [Vibrio mediterranei]
 gi|58415644|emb|CAH57236.1| recA protein [Vibrio shilonii AK1]
          Length = 265

 Score =  280 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 183/267 (68%), Positives = 228/267 (85%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLECIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD IYA+KLGVD+ +LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQKQGKTCAFIDAEHALDPIYAKKLGVDIDSLLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G + +GELIDLGVK  +V+K+GA
Sbjct: 239 LYGQGFNRYGELIDLGVKHKLVEKAGA 265


>gi|148536408|gb|ABQ85756.1| RecA [Aliivibrio salmonicida]
 gi|164608460|gb|ABY62533.1| recombinase A [Aliivibrio salmonicida]
          Length = 265

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 187/267 (70%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IAQ
Sbjct: 1   SIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAQ 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD IYA+KLGVD+  LL SQPDTGEQALEI D L RSGAVD+IV
Sbjct: 59  AQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLCSQPDTGEQALEIVDALARSGAVDLIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GELIDLGVK  +VDK+GA
Sbjct: 239 LYGKGFNREGELIDLGVKHKLVDKAGA 265


>gi|58415628|emb|CAH57228.1| recA protein [Vibrio proteolyticus]
 gi|58415630|emb|CAH57229.1| recA protein [Vibrio proteolyticus]
          Length = 265

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 180/267 (67%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GEL+DLGVK  +V+K+GA
Sbjct: 239 LYGQGFNREGELVDLGVKHKLVEKAGA 265


>gi|58415475|emb|CAH57152.1| recA protein [Vibrio fortis]
          Length = 265

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 183/267 (68%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GELIDLGVK  +++K+GA
Sbjct: 239 LYGQGFNREGELIDLGVKHKLIEKAGA 265


>gi|6694834|gb|AAF25419.1|AF214772_1 RecA protein [Arthrobacter sp. 'SMCC ZAT055']
          Length = 258

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 171/257 (66%), Positives = 213/257 (82%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DA
Sbjct: 2   PIEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD  YA KLGVD   LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEI
Sbjct: 62  EHALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEI 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EGDMG+S  G+QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG AL
Sbjct: 122 EGDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKAL 181

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+S+R+D+RR+ ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS  G +I
Sbjct: 182 KFYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQGISREGGII 241

Query: 284 DLGVKASIVDKSGAWFS 300
           D+GV+  I+ KSG+WF+
Sbjct: 242 DMGVEHGIIKKSGSWFT 258


>gi|162424787|gb|ABX90071.1| RecA protein [Burkholderia sabiae]
          Length = 266

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 193/267 (72%), Positives = 234/267 (87%), Gaps = 1/267 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G++M+LG QG   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A
Sbjct: 1   GSVMRLG-QGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA+KLGV++  LL+S PDTGEQALEI D LVRSG++D+I
Sbjct: 60  EMQKLGGTAAFIDAEHALDIQYAQKLGVNVSELLVSHPDTGEQALEIADALVRSGSIDMI 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV
Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FD
Sbjct: 180 MFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSG 296
           I+YGEGIS  GE+IDLGV+A IVDK+G
Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAG 266


>gi|58415495|emb|CAH57162.1| recA protein [Vibrio halioticoli]
          Length = 265

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 180/267 (67%), Positives = 227/267 (85%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLALDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA++LGV++ +LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPIYAQRLGVNIDSLLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IKD D I GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEIVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYG+G +  GELIDLGVK  +++K+GA
Sbjct: 239 MYGQGFNREGELIDLGVKNKLIEKAGA 265


>gi|58415542|emb|CAH57185.1| recA protein [Aliivibrio logei]
 gi|58415544|emb|CAH57186.1| recA protein [Aliivibrio logei]
 gi|164608452|gb|ABY62529.1| recombinase A [Aliivibrio logei]
 gi|164608454|gb|ABY62530.1| recombinase A [Aliivibrio logei]
 gi|164608456|gb|ABY62531.1| recombinase A [Aliivibrio logei]
 gi|164608462|gb|ABY62534.1| recombinase A [Aliivibrio wodanis]
 gi|164608464|gb|ABY62535.1| recombinase A [Aliivibrio wodanis]
 gi|164608466|gb|ABY62536.1| recombinase A [Aliivibrio wodanis]
 gi|164608468|gb|ABY62537.1| recombinase A [Aliivibrio sp. ATCC 33715]
 gi|164608470|gb|ABY62538.1| recombinase A [Vibrio sp. cann.1.1]
 gi|164608472|gb|ABY62539.1| recombinase A [Vibrio sp. cann.1.2]
 gi|164608474|gb|ABY62540.1| recombinase A [Vibrio sp. cann.1.3]
 gi|164608476|gb|ABY62541.1| recombinase A [Vibrio sp. cann.1.4]
 gi|164608478|gb|ABY62542.1| recombinase A [Vibrio sp. cann.2.1]
 gi|164608480|gb|ABY62543.1| recombinase A [Vibrio sp. cann.2.2]
 gi|164608482|gb|ABY62544.1| recombinase A [Vibrio sp. cann.2.3]
 gi|164608484|gb|ABY62545.1| recombinase A [Vibrio sp. cann.2.4]
 gi|164608486|gb|ABY62546.1| recombinase A [Vibrio sp. cann.2.5]
 gi|164608488|gb|ABY62547.1| recombinase A [Vibrio sp. cann.2.6]
 gi|164608490|gb|ABY62548.1| recombinase A [Vibrio sp. MdR7]
 gi|164608492|gb|ABY62549.1| recombinase A [Vibrio sp. SA5]
 gi|164608494|gb|ABY62550.1| recombinase A [Vibrio sp. SA6]
          Length = 265

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 187/267 (70%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IAQ
Sbjct: 1   SIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEAIAQ 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD IYA+KLGVD+  LL SQPDTGEQALEI D L RSGAVD+IV
Sbjct: 59  AQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLCSQPDTGEQALEIVDALARSGAVDVIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GELIDLGVK  +VDK+GA
Sbjct: 239 LYGKGFNREGELIDLGVKHKLVDKAGA 265


>gi|272894044|gb|ACZ96548.1| RecA [Burkholderia lata]
          Length = 274

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 186/262 (70%), Positives = 229/262 (87%)

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEIT
Sbjct: 1   SGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEIT 60

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C++
Sbjct: 61  DALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLV 120

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKN
Sbjct: 121 IFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKN 180

Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317
           K++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FL
Sbjct: 181 KVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFL 240

Query: 318 RENIEIAENIESLLRQNAGLVA 339
           REN EIA  IE+ +R++ G+VA
Sbjct: 241 RENPEIAREIENRIRESLGVVA 262


>gi|110264733|gb|ABG56942.1| recA protein [Photobacterium kishitanii]
 gi|110264735|gb|ABG56943.1| recA protein [Photobacterium kishitanii]
 gi|110264737|gb|ABG56944.1| recA protein [Photobacterium kishitanii]
 gi|110264739|gb|ABG56945.1| recA protein [Photobacterium kishitanii]
 gi|110264745|gb|ABG56948.1| recA protein [Photobacterium kishitanii]
 gi|110264747|gb|ABG56949.1| recA protein [Photobacterium kishitanii]
 gi|110264761|gb|ABG56956.1| recA protein [Photobacterium kishitanii]
 gi|110264763|gb|ABG56957.1| recA protein [Photobacterium kishitanii]
 gi|110264765|gb|ABG56958.1| recA protein [Photobacterium kishitanii]
 gi|110264767|gb|ABG56959.1| recA protein [Photobacterium kishitanii]
 gi|110264781|gb|ABG56966.1| recA protein [Photobacterium kishitanii]
 gi|110264785|gb|ABG56968.1| recA protein [Photobacterium kishitanii]
 gi|156067111|gb|ABR12777.2| recombinase A [Photobacterium kishitanii]
 gi|156067115|gb|ABR12779.2| recombinase A [Photobacterium kishitanii]
 gi|156067125|gb|ABR12784.2| recombinase A [Photobacterium kishitanii]
 gi|156067129|gb|ABR12786.2| recombinase A [Photobacterium kishitanii]
 gi|156067131|gb|ABR12787.2| recombinase A [Photobacterium kishitanii]
 gi|156067135|gb|ABR12789.2| recombinase A [Photobacterium kishitanii]
 gi|156067137|gb|ABR12790.2| recombinase A [Photobacterium kishitanii]
 gi|156067139|gb|ABR12791.2| recombinase A [Photobacterium kishitanii]
 gi|156067155|gb|ABR12799.2| recombinase A [Photobacterium kishitanii]
          Length = 262

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 184/264 (69%), Positives = 224/264 (84%), Gaps = 2/264 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L TIA +QK G TCAF+DAEHALD IYA KLGVD+  LL+SQPDTGEQALEI D L R
Sbjct: 59  LTLETIAAAQKAGKTCAFIDAEHALDPIYAEKLGVDINQLLVSQPDTGEQALEIVDALAR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 119 SGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 178

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+P
Sbjct: 179 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAP 238

Query: 263 FKQVEFDIMYGEGISFFGELIDLG 286
           FKQ E  I+YG+G +  GELIDLG
Sbjct: 239 FKQAETQILYGQGFNRNGELIDLG 262


>gi|4191779|gb|AAD10148.1| putative recA protein [Arabidopsis thaliana]
          Length = 376

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 176/340 (51%), Positives = 241/340 (70%), Gaps = 7/340 (2%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           +  K  AL+ AL QI   +GKG+IM LG +      + V S+GS  LD+ALG+GG PKGR
Sbjct: 1   MSKKEIALQQALDQITSSFGKGSIMYLG-RAVSPRNVPVFSTGSFALDVALGVGGLPKGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPE+SGKTTLALH IA++QK GGTC FVDAEHALDS  A+ +GV+ +NLL+SQPD
Sbjct: 60  VVEIYGPEASGKTTLALHVIAEAQKQGGTCVFVDAEHALDSSLAKAIGVNTENLLLSQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GEQAL + D L+RSG+VD+IV+DSVAAL P+ E+EG+MG++   MQARLMSQALRKL+ 
Sbjct: 120 CGEQALSLVDTLIRSGSVDVIVVDSVAALVPKGELEGEMGDAHMAMQARLMSQALRKLSH 179

Query: 189 SISRSKCILVFINQMRMKIGV---MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           S+S S+ +L+FINQ+R K+       G  E T GGNALKFY+S+RL+I+R+G IK  +  
Sbjct: 180 SLSLSQTLLIFINQVRSKLSTFGGFGGPTEVTCGGNALKFYASMRLNIKRIGLIKKGEET 239

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           TG+Q  VK+VKNK+A PF+  +F++ +G+GI    E+IDL +K   + K+G +++  G+ 
Sbjct: 240 TGSQVSVKIVKNKLAPPFRTAQFELEFGKGICKITEIIDLSIKHKFIAKNGTFYNLNGKN 299

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
              G+E  K FL++N    E +   L+    L+AD    +
Sbjct: 300 -YHGKEALKRFLKQNESDQEELMKKLQDK--LIADEAADK 336


>gi|58415666|emb|CAH57247.1| recA protein [Vibrio tubiashii]
 gi|58415670|emb|CAH57249.1| recA protein [Vibrio tubiashii]
 gi|58415674|emb|CAH57251.1| recA protein [Vibrio tubiashii]
          Length = 265

 Score =  279 bits (712), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 182/267 (68%), Positives = 225/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLECIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG G +  GELIDLGVK  +V+K+GA
Sbjct: 239 LYGAGFNREGELIDLGVKHKLVEKAGA 265


>gi|58415421|emb|CAH57125.1| recA protein [Vibrio cincinnatiensis]
          Length = 265

 Score =  279 bits (712), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 183/267 (68%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYARKLGV++  LL+SQPDTGEQALEI D L RSGAVD++V
Sbjct: 59  AQRVGKTCAFIDAEHALDPIYARKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ +  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQADTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GELIDLGVK  +V+KSGA
Sbjct: 239 LYGQGFNREGELIDLGVKHKLVEKSGA 265


>gi|58415656|emb|CAH57242.1| recA protein [Vibrio tapetis]
 gi|58415658|emb|CAH57243.1| recA protein [Vibrio tapetis]
          Length = 265

 Score =  279 bits (712), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 185/267 (69%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIKD D I GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEIVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GELIDLGVK  +VDK+GA
Sbjct: 239 LYGQGFNRNGELIDLGVKHKLVDKAGA 265


>gi|6694854|gb|AAF25439.1|AF214792_1 RecA protein [Arthrobacter nicotianae]
          Length = 258

 Score =  279 bits (712), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 180/257 (70%), Positives = 214/257 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IEV+ +GS+ LD ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +QK GG  AF+DA
Sbjct: 2   PIEVIPTGSVALDAALGIGGLPRGRVVEIYGPESSGKTTVALHAVASAQKAGGVAAFIDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD  YA+KLGVD   LL+SQPDTGEQALEI DMLV SGA+DIIVIDSVAAL PRAEI
Sbjct: 62  EHALDPEYAKKLGVDTDALLVSQPDTGEQALEIMDMLVGSGALDIIVIDSVAALVPRAEI 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRK+T  +S SK   +FINQ+R KIGV FGSPETTTGG AL
Sbjct: 122 EGEMGDSHVGLQARLMSQALRKITGRLSASKTTAIFINQLREKIGVFFGSPETTTGGKAL 181

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+SVR+DIRR+ ++K+  +  GN+TR K+VKNKMA PFKQ EFDI+YG GIS  G LI
Sbjct: 182 KFYASVRIDIRRIETLKEGTNAVGNRTRCKIVKNKMAPPFKQAEFDILYGHGISKEGSLI 241

Query: 284 DLGVKASIVDKSGAWFS 300
           D+GV+ ++V KSGAWF+
Sbjct: 242 DMGVEHNLVKKSGAWFT 258


>gi|290795109|gb|ADD64570.1| RecA recombinase [Vibrio tasmaniensis]
          Length = 266

 Score =  279 bits (712), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 185/268 (69%), Positives = 227/268 (84%), Gaps = 2/268 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA
Sbjct: 1   GSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++
Sbjct: 59  AAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVL 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGV
Sbjct: 119 VIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  
Sbjct: 179 MFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQ 238

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGA 297
           I+YG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 ILYGKGFNREGELIDLGVKNKLVEKAGA 266


>gi|260656830|gb|ACX47805.1| recombinase A [Vibrio casei]
          Length = 267

 Score =  279 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 184/269 (68%), Positives = 229/269 (85%), Gaps = 2/269 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  I
Sbjct: 1   KGSIMKLGDNRTM--DVETISTGSLALDIALGAGGLPMGRIVEVYGPESSGKTTLTLELI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGV++ +LL+SQPDTGEQALEI D L RSGA+D+
Sbjct: 59  AAAQRVGKTCAFIDAEHALDPIYAQKLGVNINDLLVSQPDTGEQALEICDALARSGAIDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG
Sbjct: 119 LVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFGSPETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E 
Sbjct: 179 VMFGSPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAET 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGA 297
            I+YG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 QILYGKGFNREGELIDLGVKNKLVEKAGA 267


>gi|304564419|gb|ADM45073.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 265

 Score =  279 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 179/267 (67%), Positives = 225/267 (84%), Gaps = 2/267 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++
Sbjct: 1   IMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVI
Sbjct: 59  QKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVI 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMF
Sbjct: 119 DSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETT GG ALKFY+++RLD+R+V +IK  + I G++TRVKVVKNK+A PFKQ EFDIM
Sbjct: 179 GNPETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIM 238

Query: 272 YGEGISFFGELIDLGVKASIVDKSGAW 298
           YGEGIS  G ++D+G    I++KSGAW
Sbjct: 239 YGEGISREGSILDIGASIDIIEKSGAW 265


>gi|54792441|emb|CAE45600.1| recombination-repair protein [Vibrio gallicus]
 gi|58415487|emb|CAH57158.1| recA protein [Vibrio gallicus]
          Length = 259

 Score =  279 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 179/261 (68%), Positives = 222/261 (85%), Gaps = 2/261 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG   ++   +E +S+GSL LD+ALG GG P GRIVE+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRLGDNKTM--DVETISTGSLSLDVALGAGGLPMGRIVEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G TCAFVDAEHALD IYA+KLGVD++ LL+SQPDTGEQALEI D L R
Sbjct: 59  LTLELIAAAQREGKTCAFVDAEHALDPIYAQKLGVDIEQLLVSQPDTGEQALEICDALAR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 119 SGAVDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 178

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D I GN+TR+KVVKNK+A+P
Sbjct: 179 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEIVGNETRIKVVKNKIAAP 238

Query: 263 FKQVEFDIMYGEGISFFGELI 283
           FKQ E  IMYG+G +  GELI
Sbjct: 239 FKQAETQIMYGKGFNREGELI 259


>gi|156067133|gb|ABR12788.2| recombinase A [Photobacterium kishitanii]
          Length = 262

 Score =  279 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 184/264 (69%), Positives = 224/264 (84%), Gaps = 2/264 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L TIA +QK G TCAF+DAEHALD IYA KLGVD+  LL+SQPDTGEQALEI D L R
Sbjct: 59  LTLETIAAAQKVGKTCAFIDAEHALDPIYAEKLGVDINQLLVSQPDTGEQALEIVDALAR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 119 SGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 178

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+P
Sbjct: 179 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAP 238

Query: 263 FKQVEFDIMYGEGISFFGELIDLG 286
           FKQ E  I+YG+G +  GELIDLG
Sbjct: 239 FKQAETQILYGQGFNRNGELIDLG 262


>gi|110264743|gb|ABG56947.1| recA protein [Photobacterium kishitanii]
 gi|110264749|gb|ABG56950.1| recA protein [Photobacterium kishitanii]
 gi|110264753|gb|ABG56952.1| recA protein [Photobacterium kishitanii]
 gi|110264755|gb|ABG56953.1| recA protein [Photobacterium kishitanii]
 gi|110264773|gb|ABG56962.1| recA protein [Photobacterium kishitanii]
 gi|110264775|gb|ABG56963.1| recA protein [Photobacterium kishitanii]
 gi|110264777|gb|ABG56964.1| recA protein [Photobacterium kishitanii]
 gi|110264783|gb|ABG56967.1| recA protein [Photobacterium kishitanii]
 gi|110264787|gb|ABG56969.1| recA protein [Photobacterium kishitanii]
 gi|156067107|gb|ABR12775.2| recombinase A [Photobacterium kishitanii]
 gi|156067113|gb|ABR12778.2| recombinase A [Photobacterium kishitanii]
 gi|156067127|gb|ABR12785.2| recombinase A [Photobacterium kishitanii]
 gi|156067149|gb|ABR12796.2| recombinase A [Photobacterium kishitanii]
 gi|156067151|gb|ABR12797.2| recombinase A [Photobacterium kishitanii]
          Length = 262

 Score =  279 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 184/264 (69%), Positives = 224/264 (84%), Gaps = 2/264 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L TIA +QK G TCAF+DAEHALD IYA KLGVD+  LL+SQPDTGEQALEI D L R
Sbjct: 59  LTLETIAAAQKVGKTCAFIDAEHALDPIYAEKLGVDINQLLVSQPDTGEQALEIVDALAR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 119 SGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 178

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+P
Sbjct: 179 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAP 238

Query: 263 FKQVEFDIMYGEGISFFGELIDLG 286
           FKQ E  I+YG+G +  GELIDLG
Sbjct: 239 FKQAETQILYGQGFNRNGELIDLG 262


>gi|122912899|gb|ABM68013.1| RecA [Epulopiscium sp. 'N.t. morphotype B']
          Length = 267

 Score =  279 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 167/267 (62%), Positives = 215/267 (80%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99
           SI   I+  S+G++ LDIALG GG P GRIVE++GPESSGKTTL LH IA+ QK+GG  A
Sbjct: 1   SINTKIKTFSTGAISLDIALGAGGIPIGRIVEVFGPESSGKTTLTLHMIAEVQKSGGIAA 60

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F+DAEHALD  YA++LGV++ +L +SQPD GEQALEI + +V S A++++VIDSVAAL P
Sbjct: 61  FIDAEHALDPEYAQRLGVNISDLYVSQPDNGEQALEIAETMVHSQAINLVVIDSVAALVP 120

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           RAEI+G+MG+S  G+QARLMSQALRKLT  +++S C ++FINQ+R K+GV+FG+PETT G
Sbjct: 121 RAEIDGNMGDSHVGLQARLMSQALRKLTGLVNKSNCTVIFINQLREKVGVIFGNPETTPG 180

Query: 220 GNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFF 279
           G ALKFYSSVRLDIR+  +IK+   I G++TRVKVVKNK+A PFKQ EFDI+YGEGIS  
Sbjct: 181 GRALKFYSSVRLDIRKAETIKNATEIIGSKTRVKVVKNKIAPPFKQAEFDIIYGEGISSI 240

Query: 280 GELIDLGVKASIVDKSGAWFSFKGQRL 306
           G+++D  V   IV K GAW+S+ G ++
Sbjct: 241 GDILDTAVNIDIVAKGGAWYSYNGTKI 267


>gi|304564611|gb|ADM45169.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 265

 Score =  279 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 178/267 (66%), Positives = 225/267 (84%), Gaps = 2/267 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++
Sbjct: 1   IMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVI
Sbjct: 59  QKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVI 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMF
Sbjct: 119 DSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIM
Sbjct: 179 GNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIM 238

Query: 272 YGEGISFFGELIDLGVKASIVDKSGAW 298
           YGEGIS  G ++D+G    I++KSGAW
Sbjct: 239 YGEGISREGSILDIGASIDIIEKSGAW 265


>gi|58415491|emb|CAH57160.1| recA protein [Vibrio halioticoli]
 gi|58415497|emb|CAH57163.1| recA protein [Vibrio halioticoli]
          Length = 265

 Score =  278 bits (711), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 181/267 (67%), Positives = 227/267 (85%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLALDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGV++ +LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPIYAQKLGVNIDSLLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IKD D I GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEIVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYG+G +  GELIDLGVK  +++K+GA
Sbjct: 239 MYGQGFNREGELIDLGVKNKLIEKAGA 265


>gi|58415341|emb|CAH57085.1| recA protein [Photobacterium damselae subsp. damselae]
 gi|58415343|emb|CAH57086.1| recA protein [Photobacterium damselae subsp. damselae]
          Length = 265

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 185/267 (69%), Positives = 227/267 (85%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   IE VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L TIA 
Sbjct: 1   SIMKLGDNRTM--DIETVSTGSLALDIALGAGGLPMGRIVEIFGPESSGKTTLTLETIAS 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGAVD+IV
Sbjct: 59  AQRQGKTCAFIDAEHALDPIYAKKLGVDIDQLLVSQPDTGEQALEICDALARSGAVDLIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIKD + + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKDGEEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GELIDLGVK  +++K+GA
Sbjct: 239 LYGQGFNRVGELIDLGVKQKLIEKAGA 265


>gi|301599265|emb|CBW30985.1| recombinase A [Vibrio azureus]
          Length = 258

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 175/260 (67%), Positives = 219/260 (84%), Gaps = 2/260 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE
Sbjct: 1   KQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVE 58

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGE
Sbjct: 59  IYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGE 118

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ 
Sbjct: 119 QALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLK 178

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR
Sbjct: 179 QSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETR 238

Query: 252 VKVVKNKMASPFKQVEFDIM 271
           +KVVKNK+A+PFK+    IM
Sbjct: 239 IKVVKNKIAAPFKEANTQIM 258


>gi|56808546|ref|ZP_00366280.1| COG0468: RecA/RadA recombinase [Streptococcus pyogenes M49 591]
          Length = 302

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 174/287 (60%), Positives = 226/287 (78%), Gaps = 6/287 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+G
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI
Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK     KDS  
Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGTTQIKGTGDQKDSSI 255

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVD 293
           G +T++KVVKNK+A PFK  E +IMYGEGIS  GEL+ +     I+ 
Sbjct: 256 GKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQ 302


>gi|58415682|emb|CAH57255.1| recA protein [Aliivibrio wodanis]
 gi|58415684|emb|CAH57256.1| recA protein [Aliivibrio wodanis]
 gi|148536410|gb|ABQ85757.1| RecA [Aliivibrio wodanis]
          Length = 265

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 186/267 (69%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IAQ
Sbjct: 1   SIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEAIAQ 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD IYA+KLGVD+  LL SQPDTGEQALEI D L RSGAVD+IV
Sbjct: 59  AQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLCSQPDTGEQALEIVDALARSGAVDVIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G++K+ D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GELIDLGVK  +VDK+GA
Sbjct: 239 LYGKGFNREGELIDLGVKHKLVDKAGA 265


>gi|73920655|gb|AAZ94163.1| RecA [Burkholderia sp. BC204]
          Length = 263

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 194/264 (73%), Positives = 231/264 (87%), Gaps = 1/264 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L
Sbjct: 1   QFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTL 59

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+
Sbjct: 60  QVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGS 119

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RM
Sbjct: 120 IDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRM 179

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++
Sbjct: 180 KIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRE 239

Query: 266 VEFDIMYGEGISFFGELIDLGVKA 289
             FDI+YGEGIS  GE+IDLGV+A
Sbjct: 240 AIFDILYGEGISRQGEIIDLGVQA 263


>gi|58415447|emb|CAH57138.1| recA protein [Vibrio diazotrophicus]
 gi|58415449|emb|CAH57139.1| recA protein [Vibrio diazotrophicus]
 gi|58415451|emb|CAH57140.1| recA protein [Vibrio diazotrophicus]
 gi|58415455|emb|CAH57142.1| recA protein [Vibrio diazotrophicus]
          Length = 265

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 181/267 (67%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYARKLGV++  LL+SQPDTGEQALEI D L RSGAVD++V
Sbjct: 59  AQRVGKTCAFIDAEHALDPIYARKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ +  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQADTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 LYGQGFNREGELIDLGVKHKLVEKAGA 265


>gi|219558743|ref|ZP_03537819.1| recombinase A [Mycobacterium tuberculosis T17]
          Length = 305

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 173/301 (57%), Positives = 225/301 (74%), Gaps = 14/301 (4%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+ KALE A++QI++ YGKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GR
Sbjct: 4   TPDREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPD
Sbjct: 62  VIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T 
Sbjct: 122 TGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD  +  GN
Sbjct: 182 ALNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGN 241

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV--DKSG--------AW 298
           +TRVKVVKNK  +   +  FD + G       +++D      +V   K G        +W
Sbjct: 242 RTRVKVVKNKCLAEGTR-IFDPVTGT-THRIEDVVDGRKPIHVVAAAKDGTLHARPVVSW 299

Query: 299 F 299
           F
Sbjct: 300 F 300


>gi|58415618|emb|CAH57223.1| recA protein [Listonella pelagia]
          Length = 265

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 181/267 (67%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLECIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GELIDLGVK  +++K+GA
Sbjct: 239 LYGQGFNREGELIDLGVKNKLIEKAGA 265


>gi|58415399|emb|CAH57114.1| recA protein [Vibrio chagasii]
 gi|58415401|emb|CAH57115.1| recA protein [Vibrio chagasii]
          Length = 265

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 186/267 (69%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GELIDLGVK  +VDK+GA
Sbjct: 239 LYGQGFNREGELIDLGVKNKLVDKAGA 265


>gi|54792166|emb|CAE54399.1| recombination-repair protein [Vibrio coralliilyticus]
 gi|58415431|emb|CAH57130.1| recA protein [Vibrio coralliilyticus]
          Length = 260

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 178/262 (67%), Positives = 221/262 (84%), Gaps = 2/262 (0%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           + +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL 
Sbjct: 1   KQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLT 58

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSG
Sbjct: 59  LELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSG 118

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+R
Sbjct: 119 AIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIR 178

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFK
Sbjct: 179 MKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFK 238

Query: 265 QVEFDIMYGEGISFFGELIDLG 286
           Q E  IMYG G +  GELIDLG
Sbjct: 239 QAETQIMYGAGFNREGELIDLG 260


>gi|58415327|emb|CAH57078.1| recA protein [Enterovibrio norvegicus]
 gi|58415329|emb|CAH57079.1| recA protein [Enterovibrio norvegicus]
 gi|58415331|emb|CAH57080.1| recA protein [Enterovibrio norvegicus]
 gi|290795111|gb|ADD64571.1| RecA recombinase [Enterovibrio norvegicus]
 gi|290795113|gb|ADD64572.1| RecA recombinase [Enterovibrio norvegicus]
          Length = 265

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 193/267 (72%), Positives = 231/267 (86%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   IE VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  +A+
Sbjct: 1   SIMRLGDDRTM--DIETVSTGSLSLDIALGAGGLPFGRIVEIYGPESSGKTTLTLQVVAE 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD +YARKLGVD+ NLL+SQPDTGEQALEI D L RSGAVD+I+
Sbjct: 59  AQKAGKTCAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIADALTRSGAVDVII 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT++I  S  +++FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D I GN TRVKVVKNK+A+PFKQ EF I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEIVGNDTRVKVVKNKIAAPFKQAEFQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYGEGI+ +GELIDLGVK  +V+K+GA
Sbjct: 239 MYGEGINLYGELIDLGVKHKLVEKAGA 265


>gi|304564617|gb|ADM45172.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 264

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 176/263 (66%), Positives = 224/263 (85%), Gaps = 2/263 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           +R +GKG+IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTL
Sbjct: 1   ERQFGKGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTL 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALH IA++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRS
Sbjct: 59  ALHMIAEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVDIIVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+
Sbjct: 119 GAVDIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQL 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           R K+GVMFG+PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PF
Sbjct: 179 REKVGVMFGNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLG 286
           KQ EFDIMYGEGIS  G ++D+G
Sbjct: 239 KQAEFDIMYGEGISREGSILDIG 261


>gi|58415489|emb|CAH57159.1| recA protein [Vibrio gazogenes]
          Length = 265

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 180/267 (67%), Positives = 225/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYG+G +  GEL+DLGVK  +V+K+GA
Sbjct: 239 MYGQGFNREGELVDLGVKHKLVEKAGA 265


>gi|58415574|emb|CAH57201.1| recA protein [Vibrio mytili]
 gi|58415672|emb|CAH57250.1| recA protein [Vibrio tubiashii]
          Length = 265

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 177/267 (66%), Positives = 224/267 (83%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYG G +  GEL+DLGVK  +V+K+GA
Sbjct: 239 MYGRGFNREGELVDLGVKHKLVEKAGA 265


>gi|58415357|emb|CAH57093.1| recA protein [Photobacterium leiognathi subsp. leiognathi]
          Length = 265

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 183/267 (68%), Positives = 227/267 (85%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L TIA 
Sbjct: 1   SIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLETIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGAVD+IV
Sbjct: 59  AQRKGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEICDALARSGAVDLIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ +  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKQADTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GEL+DLGVK  +V+K+GA
Sbjct: 239 LYGQGFNRNGELVDLGVKHKLVEKAGA 265


>gi|58415652|emb|CAH57240.1| recA protein [Vibrio splendidus]
 gi|58415654|emb|CAH57241.1| recA protein [Vibrio splendidus]
 gi|58415662|emb|CAH57245.1| recA protein [Vibrio tasmaniensis]
 gi|58415664|emb|CAH57246.1| recA protein [Vibrio tasmaniensis]
          Length = 265

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 183/267 (68%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 LYGKGFNREGELIDLGVKNKLVEKAGA 265


>gi|58415668|emb|CAH57248.1| recA protein [Vibrio tubiashii]
          Length = 265

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 186/267 (69%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLTLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GELIDLGVK  +VDK+GA
Sbjct: 239 LYGQGFNREGELIDLGVKNKLVDKAGA 265


>gi|58415429|emb|CAH57129.1| recA protein [Vibrio coralliilyticus]
 gi|58415433|emb|CAH57131.1| recA protein [Vibrio coralliilyticus]
 gi|58415435|emb|CAH57132.1| recA protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 265

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 181/267 (67%), Positives = 225/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYG G +  GELIDLGVK  +V+K+GA
Sbjct: 239 MYGAGFNREGELIDLGVKNKLVEKAGA 265


>gi|296837367|gb|ADH59542.1| DNA recombinase [Burkholderia cepacia]
          Length = 258

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 183/258 (70%), Positives = 226/258 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEI
Sbjct: 1   SSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+
Sbjct: 61  TDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCL 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVK
Sbjct: 121 VIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVK 180

Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316
           NK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ F
Sbjct: 181 NKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREF 240

Query: 317 LRENIEIAENIESLLRQN 334
           LREN EIA  IE+ +R++
Sbjct: 241 LRENPEIAREIENRIRES 258


>gi|58415371|emb|CAH57100.1| recA protein [Vibrio alginolyticus]
 gi|58415373|emb|CAH57101.1| recA protein [Vibrio alginolyticus]
 gi|58415375|emb|CAH57102.1| recA protein [Vibrio alginolyticus]
 gi|58415377|emb|CAH57103.1| recA protein [Vibrio alginolyticus]
 gi|58415379|emb|CAH57104.1| recA protein [Vibrio alginolyticus]
 gi|215271692|emb|CAR57879.1| recombination-repair protein [Vibrio alginolyticus]
 gi|215271694|emb|CAR57880.1| recombination-repair protein [Vibrio alginolyticus]
 gi|215271696|emb|CAR57881.1| recombination-repair protein [Vibrio alginolyticus]
 gi|215271698|emb|CAR57882.1| recombination-repair protein [Vibrio alginolyticus]
          Length = 265

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 178/267 (66%), Positives = 225/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYG+G +  GEL+DLGVK  +V+K+GA
Sbjct: 239 MYGQGFNREGELVDLGVKHKLVEKAGA 265


>gi|307266022|ref|ZP_07547569.1| recA protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918984|gb|EFN49211.1| recA protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 309

 Score =  277 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 180/287 (62%), Positives = 230/287 (80%), Gaps = 2/287 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + +K KAL+ A++ I++ +GKGAI++LG + ++   IEV+ +G L LDI LGIGG  +GR
Sbjct: 1   MEEKEKALKMAIAAIEKKFGKGAIIKLGDRPNL--DIEVIPTGCLELDITLGIGGISRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EI+GPESSGKTTLALH IA++QK GGT AFVDAEHALD IYA+ LGVD+  LL++QPD
Sbjct: 59  IIEIFGPESSGKTTLALHMIAEAQKLGGTAAFVDAEHALDPIYAKNLGVDIDELLVAQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + L+RSGAVDIIVIDSVAAL PRAEIEG+MGES  G+QARLMSQALRKLT 
Sbjct: 119 TGEQALEIVEALIRSGAVDIIVIDSVAALVPRAEIEGEMGESQVGLQARLMSQALRKLTG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           + S+SK  ++FINQ+R KIGV FG+PETT GG AL+FY+ VR+D+R+  +IK  D + G+
Sbjct: 179 TASKSKTAVIFINQLREKIGVTFGNPETTPGGRALRFYAMVRIDVRKGDNIKQGDKVVGS 238

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           + ++KVVKNK+A PFKQ E ++M+GEGIS  G L+DLG K     K 
Sbjct: 239 KIKIKVVKNKLAPPFKQAEVNMMFGEGISKEGSLLDLGAKIWFNRKK 285


>gi|58415325|emb|CAH57077.1| recA protein [Enterovibrio coralii]
          Length = 265

 Score =  277 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 192/267 (71%), Positives = 230/267 (86%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   IE VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA+
Sbjct: 1   SIMRLGDDRTM--DIETVSTGSLSLDIALGAGGLPYGRIVEIYGPESSGKTTLTLQVIAE 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD +YARKL VD+ NLL+SQPDTGEQALEI D L RSGAVD+I+
Sbjct: 59  AQKQGKTCAFIDAEHALDPVYARKLHVDIDNLLVSQPDTGEQALEIADALTRSGAVDVII 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT++I  S  +++FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D + GN TRVKVVKNK+A+PFKQ EF I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEVVGNDTRVKVVKNKIAAPFKQAEFQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYGEGI+ +GELIDLGVK  +V+K+GA
Sbjct: 239 MYGEGINLYGELIDLGVKHKLVEKAGA 265


>gi|54792491|emb|CAE45625.1| recombination-repair protein [Vibrio mediterranei]
          Length = 259

 Score =  277 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 181/261 (69%), Positives = 224/261 (85%), Gaps = 2/261 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +QK G TCAF+DAEHALD IYA+KLGVD+ +LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  CIAAAQKQGKTCAFIDAEHALDPIYAKKLGVDIDSLLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELIDLGV 287
           E  I+YG+G + +GELIDLGV
Sbjct: 239 ETQILYGQGFNRYGELIDLGV 259


>gi|58415389|emb|CAH57109.1| recA protein [Vibrio campbellii]
 gi|58415393|emb|CAH57111.1| recA protein [Vibrio campbellii]
 gi|58415395|emb|CAH57112.1| recA protein [Vibrio campbellii]
 gi|58415499|emb|CAH57164.1| recA protein [Vibrio harveyi]
 gi|58415503|emb|CAH57166.1| recA protein [Vibrio harveyi]
 gi|58415505|emb|CAH57167.1| recA protein [Vibrio harveyi]
 gi|58415507|emb|CAH57168.1| recA protein [Vibrio communis]
 gi|58415509|emb|CAH57169.1| recA protein [Vibrio harveyi]
 gi|58415511|emb|CAH57170.1| recA protein [Vibrio harveyi]
 gi|58415513|emb|CAH57171.1| recA protein [Vibrio harveyi]
 gi|58415515|emb|CAH57172.1| recA protein [Vibrio harveyi]
 gi|58415517|emb|CAH57173.1| recA protein [Vibrio harveyi]
 gi|58415606|emb|CAH57217.1| recA protein [Vibrio parahaemolyticus]
 gi|58415608|emb|CAH57218.1| recA protein [Vibrio parahaemolyticus]
 gi|58415610|emb|CAH57219.1| recA protein [Vibrio parahaemolyticus]
 gi|58415634|emb|CAH57231.1| recA protein [Vibrio rotiferianus]
 gi|215271684|emb|CAR57875.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|215271686|emb|CAR57876.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|215271688|emb|CAR57877.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|215271690|emb|CAR57878.1| recombination-repair protein [Vibrio parahaemolyticus]
          Length = 265

 Score =  277 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 179/267 (67%), Positives = 225/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 MYGQGFNREGELIDLGVKHKLVEKAGA 265


>gi|58415381|emb|CAH57105.1| recA protein [Listonella anguillarum]
 gi|58415592|emb|CAH57210.1| recA protein [Vibrio ordalii]
 gi|58415596|emb|CAH57212.1| recA protein [Vibrio ordalii]
 gi|58415598|emb|CAH57213.1| recA protein [Vibrio ordalii]
          Length = 265

 Score =  277 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 180/267 (67%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSGA+D+IV
Sbjct: 59  AQRVGKTCAFIDAEHALDPIYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAIDVIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ +  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQADTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GEL+DLGVK  +V+K+GA
Sbjct: 239 LYGQGFNREGELVDLGVKHKLVEKAGA 265


>gi|54792455|emb|CAE45607.1| recombination-repair protein [Vibrio scophthalmi]
 gi|58415640|emb|CAH57234.1| recA protein [Vibrio scophthalmi LMG 19158]
          Length = 260

 Score =  277 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 178/262 (67%), Positives = 221/262 (84%), Gaps = 2/262 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIKD D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELIDLGVK 288
           E  I+YG+G +  GEL+DLG  
Sbjct: 239 ETQILYGQGFNREGELVDLGEN 260


>gi|58415439|emb|CAH57134.1| recA protein [Vibrio cyclitrophicus]
 gi|58415479|emb|CAH57154.1| recA protein [Vibrio fortis]
 gi|58415530|emb|CAH57179.1| recA protein [Vibrio kanaloae]
 gi|58415532|emb|CAH57180.1| recA protein [Vibrio kanaloae]
 gi|58415534|emb|CAH57181.1| recA protein [Vibrio lentus]
 gi|58415538|emb|CAH57183.1| recA protein [Vibrio lentus]
 gi|58415540|emb|CAH57184.1| recA protein [Vibrio lentus]
 gi|58415626|emb|CAH57227.1| recA protein [Vibrio pomeroyi]
 gi|58415646|emb|CAH57237.1| recA protein [Vibrio splendidus]
 gi|58415648|emb|CAH57238.1| recA protein [Vibrio splendidus]
 gi|58415650|emb|CAH57239.1| recA protein [Vibrio splendidus]
 gi|290795190|gb|ADD64609.1| RecA recombinase [Vibrio cyclitrophicus]
          Length = 265

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 184/267 (68%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 LYGKGFNREGELIDLGVKNKLVEKAGA 265


>gi|58415546|emb|CAH57187.1| recA protein [Aliivibrio logei]
 gi|58415678|emb|CAH57253.1| recA protein [Vibrio vulnificus]
 gi|58415680|emb|CAH57254.1| recA protein [Vibrio vulnificus]
          Length = 265

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 179/267 (67%), Positives = 225/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAKKLGVNIDQLLVSQPDTGEQALEICDALARSGAVDVIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYG+G +  GELIDLGVK  +++KSGA
Sbjct: 239 MYGQGFNREGELIDLGVKCKLIEKSGA 265


>gi|290795115|gb|ADD64573.1| RecA recombinase [Enterovibrio norvegicus]
          Length = 265

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 194/267 (72%), Positives = 231/267 (86%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           AIM+LG   ++   IE VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  +A+
Sbjct: 1   AIMRLGDDRTM--DIETVSTGSLSLDIALGAGGLPFGRIVEIYGPESSGKTTLTLQVVAE 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD +YARKLGVD+ NLL+SQPDTGEQALEI D L RSGAVD+I+
Sbjct: 59  AQKAGKTCAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIADALTRSGAVDVII 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT++I  S  +++FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D I GN TRVKVVKNK+A+PFKQ EF I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEIVGNDTRVKVVKNKIAAPFKQAEFQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYGEGI+ +GELIDLGVK  +V+K+GA
Sbjct: 239 MYGEGINLYGELIDLGVKHKLVEKAGA 265


>gi|304564687|gb|ADM45207.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 264

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 177/266 (66%), Positives = 224/266 (84%), Gaps = 2/266 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++Q
Sbjct: 1   MRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVID
Sbjct: 59  KMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG
Sbjct: 119 SVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMY
Sbjct: 179 NPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMY 238

Query: 273 GEGISFFGELIDLGVKASIVDKSGAW 298
           GEGIS  G ++D+G    I++KSGAW
Sbjct: 239 GEGISREGSILDIGASIDIIEKSGAW 264


>gi|215271682|emb|CAR57874.1| recombination-repair protein [Vibrio natriegens]
          Length = 262

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 176/264 (66%), Positives = 222/264 (84%), Gaps = 2/264 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEA 238

Query: 267 EFDIMYGEGISFFGELIDLGVKAS 290
              IMYG+G +  GEL+DLGVK  
Sbjct: 239 NTQIMYGQGFNREGELVDLGVKHK 262


>gi|6694839|gb|AAF25424.1|AF214777_1 RecA protein [Arthrobacter sp. 'SMCC G965']
          Length = 258

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 170/257 (66%), Positives = 212/257 (82%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DA
Sbjct: 2   PIEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD  YA KLGVD   LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEI
Sbjct: 62  EHALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEI 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EGDMG+S  G+QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG AL
Sbjct: 122 EGDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKAL 181

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+S+R+D+RR+ ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS  G +I
Sbjct: 182 KFYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQGISREGGII 241

Query: 284 DLGVKASIVDKSGAWFS 300
           D+GV+  ++ KSG WF+
Sbjct: 242 DMGVEHGLIKKSGPWFT 258


>gi|58415477|emb|CAH57153.1| recA protein [Vibrio fortis]
          Length = 265

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 186/267 (69%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMKLGDNKTM--DVETVSTGSLALDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD IYARKLGVD+  LL+SQPDTGEQALEI D L RSGAVD++V
Sbjct: 59  AQKEGKTCAFIDAEHALDPIYARKLGVDIDQLLVSQPDTGEQALEIADALARSGAVDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RK+T ++  S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKITGNLKSSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIKD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G + +GELIDLGVK  +V+K+GA
Sbjct: 239 LYGKGFNRYGELIDLGVKHKLVEKAGA 265


>gi|58415333|emb|CAH57081.1| recA protein [Grimontia hollisae]
 gi|58415335|emb|CAH57082.1| recA protein [Grimontia hollisae]
 gi|58415337|emb|CAH57083.1| recA protein [Grimontia hollisae]
          Length = 265

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 192/267 (71%), Positives = 230/267 (86%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   IE VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA+
Sbjct: 1   SIMRLGDDRTM--DIETVSTGSLSLDIALGAGGLPYGRIVEIYGPESSGKTTLTLQVIAE 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD IYARKL VD+ NLL+SQPDTGEQALEI D L RSGAVD+I+
Sbjct: 59  AQKQGKTCAFIDAEHALDPIYARKLNVDIDNLLVSQPDTGEQALEIADALTRSGAVDVII 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT++I  S  +++FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D + GN TRVKVVKNK+A+PFKQ EF I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEVVGNDTRVKVVKNKIAAPFKQAEFQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YGEGI+ +GELIDLGVK  +V+K+GA
Sbjct: 239 LYGEGINLYGELIDLGVKHKLVEKAGA 265


>gi|58415385|emb|CAH57107.1| recA protein [Vibrio campbellii]
 gi|58415387|emb|CAH57108.1| recA protein [Vibrio campbellii]
          Length = 265

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 179/267 (67%), Positives = 224/267 (83%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAMKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 MYGQGFNREGELIDLGVKHKLVEKAGA 265


>gi|304564403|gb|ADM45065.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 264

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 177/266 (66%), Positives = 223/266 (83%), Gaps = 2/266 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLAL
Sbjct: 1   QFGKGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLAL 58

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
           H IA++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGA
Sbjct: 59  HMIAEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGA 118

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           VDIIVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R 
Sbjct: 119 VDIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLRE 178

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           K+GVMFG+PETT GG ALKFY+++RLD+R+V +IK  + I G++TRVKVVKNK+A PFKQ
Sbjct: 179 KVGVMFGNPETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQ 238

Query: 266 VEFDIMYGEGISFFGELIDLGVKASI 291
            EFDIMYGEGIS  G ++D+G    I
Sbjct: 239 AEFDIMYGEGISREGSILDIGASIDI 264


>gi|301599263|emb|CBW30984.1| recombinase A [Vibrio sp. BFLP-10]
          Length = 257

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 172/259 (66%), Positives = 217/259 (83%), Gaps = 2/259 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE
Sbjct: 1   KQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVE 58

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGE
Sbjct: 59  VYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGE 118

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ 
Sbjct: 119 QALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLK 178

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR
Sbjct: 179 QSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETR 238

Query: 252 VKVVKNKMASPFKQVEFDI 270
           +KVVKNK+A+P K+    I
Sbjct: 239 IKVVKNKIAAPLKEANTQI 257


>gi|290795117|gb|ADD64574.1| RecA recombinase [Vibrio splendidus]
          Length = 263

 Score =  276 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 183/265 (69%), Positives = 224/265 (84%), Gaps = 2/265 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D
Sbjct: 59  IAAAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAID 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAE 238

Query: 268 FDIMYGEGISFFGELIDLGVKASIV 292
             I+YG+G +  GELIDLGVK  +V
Sbjct: 239 TQILYGKGFNREGELIDLGVKNKLV 263


>gi|58415520|emb|CAH57174.1| recA protein [Vibrio hispanicus]
          Length = 265

 Score =  276 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 180/267 (67%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMKLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGV + +LL+SQPDTGEQALEI D L RSGAVD++V
Sbjct: 59  AQRAGKTCAFIDAEHALDPVYAKKLGVQIDDLLVSQPDTGEQALEICDALARSGAVDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ +  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQADTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 LYGQGFNREGELIDLGVKHKLVEKAGA 265


>gi|54792489|emb|CAE45624.1| recombination-repair protein [Vibrio orientalis]
 gi|58415600|emb|CAH57214.1| recA protein [Vibrio orientalis]
          Length = 259

 Score =  276 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 181/261 (69%), Positives = 222/261 (85%), Gaps = 2/261 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  CIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELIDLGV 287
           E  I+YG+G +  GELIDLGV
Sbjct: 239 ETQILYGQGFNREGELIDLGV 259


>gi|110264751|gb|ABG56951.1| recA protein [Photobacterium kishitanii]
          Length = 261

 Score =  276 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 183/263 (69%), Positives = 223/263 (84%), Gaps = 2/263 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTL 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L TIA +QK G TCAF+DAEHALD IYA KLGVD+  LL+SQPDTGEQALEI D L RS
Sbjct: 59  TLETIAAAQKVGKTCAFIDAEHALDPIYAEKLGVDINQLLVSQPDTGEQALEIVDALARS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+
Sbjct: 119 GAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQI 178

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PF
Sbjct: 179 RMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPF 238

Query: 264 KQVEFDIMYGEGISFFGELIDLG 286
           KQ E  I+YG+G +  GELIDLG
Sbjct: 239 KQAETQILYGQGFNRNGELIDLG 261


>gi|54792469|emb|CAE45614.1| recombination-repair protein [Vibrio nereis]
 gi|58415588|emb|CAH57208.1| recA protein [Vibrio nereis]
          Length = 259

 Score =  276 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 178/261 (68%), Positives = 222/261 (85%), Gaps = 2/261 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELIDLGV 287
           E  I+YG+G +  GELIDLGV
Sbjct: 239 ETQILYGQGFNREGELIDLGV 259


>gi|58415467|emb|CAH57148.1| recA protein [Vibrio fluvialis]
 gi|58415471|emb|CAH57150.1| recA protein [Vibrio fluvialis]
 gi|58415481|emb|CAH57155.1| recA protein [Vibrio furnissii]
 gi|58415483|emb|CAH57156.1| recA protein [Vibrio furnissii]
 gi|58415485|emb|CAH57157.1| recA protein [Vibrio furnissii]
          Length = 265

 Score =  276 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 179/267 (67%), Positives = 224/267 (83%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I+ 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELISA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YAR+LGV +  LL+SQPDTGEQALEI D L RSGAVD+IV
Sbjct: 59  AQREGKTCAFIDAEHALDPVYARRLGVKIDELLVSQPDTGEQALEICDALARSGAVDVIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYG+G +  GELI+LGVK  +V+K+GA
Sbjct: 239 MYGQGFNREGELIELGVKHKLVEKAGA 265


>gi|319827232|gb|ADV74821.1| recombinase repair protein [Vibrio neptunius]
          Length = 263

 Score =  276 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 181/265 (68%), Positives = 223/265 (84%), Gaps = 2/265 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAID 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAE 238

Query: 268 FDIMYGEGISFFGELIDLGVKASIV 292
             IMYG G +  GELIDLGVK  +V
Sbjct: 239 TQIMYGAGFNREGELIDLGVKNKLV 263


>gi|6694808|gb|AAF25393.1|AF214746_1 RecA protein [Arthrobacter sp. 'SMCC G993']
          Length = 256

 Score =  276 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 170/255 (66%), Positives = 211/255 (82%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DA
Sbjct: 2   PIEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD  YA KLGVD   LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEI
Sbjct: 62  EHALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEI 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EGDMG+S  G+QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG AL
Sbjct: 122 EGDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKAL 181

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+S+R+D+RR+ ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS  G +I
Sbjct: 182 KFYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQGISREGGII 241

Query: 284 DLGVKASIVDKSGAW 298
           D+GV+  I+ KSG+W
Sbjct: 242 DMGVEHGIIKKSGSW 256


>gi|54792176|emb|CAE54404.1| recombination-repair protein [Vibrio fortis]
 gi|58415473|emb|CAH57151.1| recA protein [Vibrio fortis]
          Length = 258

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 179/260 (68%), Positives = 220/260 (84%), Gaps = 2/260 (0%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           + +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL 
Sbjct: 1   KQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLT 58

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA +Q+ G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSG
Sbjct: 59  LELIAAAQREGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSG 118

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+R
Sbjct: 119 AIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIR 178

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFK
Sbjct: 179 MKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFK 238

Query: 265 QVEFDIMYGEGISFFGELID 284
           Q E  I+YG+G +  GELID
Sbjct: 239 QAETQILYGQGFNREGELID 258


>gi|58415403|emb|CAH57116.1| recA protein [Vibrio cholerae]
 gi|58415566|emb|CAH57197.1| recA protein [Vibrio mimicus]
 gi|159146606|gb|ABW90747.1| recombinase A [Vibrio cholerae]
          Length = 265

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 179/267 (67%), Positives = 225/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYG+G +  GELIDLGVK  +V+KSGA
Sbjct: 239 MYGQGFNREGELIDLGVKHKMVEKSGA 265


>gi|58415493|emb|CAH57161.1| recA protein [Vibrio halioticoli]
          Length = 265

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 182/267 (68%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA 
Sbjct: 1   SIMKLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLEVIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGAVD+IV
Sbjct: 59  AQKQGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEICDALARSGAVDVIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QARL+SQ++RK+T ++  S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARLLSQSMRKMTGNLKASNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G++K+ D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G + +GELIDLGVK  +VDK+GA
Sbjct: 239 LYGKGFNRYGELIDLGVKHKLVDKAGA 265


>gi|164608458|gb|ABY62532.1| recombinase A [Aliivibrio salmonicida]
          Length = 263

 Score =  275 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 185/265 (69%), Positives = 224/265 (84%), Gaps = 2/265 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IAQ
Sbjct: 1   SIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAQ 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD IYA+KLGVD+  LL SQPDTGEQALEI D L RSGAVD+IV
Sbjct: 59  AQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLCSQPDTGEQALEIVDALARSGAVDLIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKS 295
           +YG+G +  GELIDLGVK  +VDK+
Sbjct: 239 LYGKGFNREGELIDLGVKHKLVDKA 263


>gi|58415463|emb|CAH57146.1| recA protein [Aliivibrio fischeri]
 gi|58415465|emb|CAH57147.1| recA protein [Aliivibrio fischeri]
 gi|110264721|gb|ABG56936.1| recA protein [Aliivibrio fischeri]
 gi|110264723|gb|ABG56937.1| recA protein [Aliivibrio fischeri]
 gi|110264725|gb|ABG56938.1| recA protein [Aliivibrio fischeri]
 gi|110264727|gb|ABG56939.1| recA protein [Aliivibrio fischeri]
 gi|110264729|gb|ABG56940.1| recA protein [Aliivibrio fischeri]
 gi|110264731|gb|ABG56941.1| recA protein [Aliivibrio fischeri]
 gi|148536402|gb|ABQ85753.1| RecA [Aliivibrio fischeri]
 gi|148536404|gb|ABQ85754.1| RecA [Aliivibrio fischeri]
 gi|148536406|gb|ABQ85755.1| RecA [Aliivibrio fischeri]
 gi|156025123|gb|ABR12764.2| recombinase A [Aliivibrio fischeri]
 gi|164608450|gb|ABY62528.1| recombinase A [Aliivibrio fischeri]
          Length = 265

 Score =  275 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 183/267 (68%), Positives = 226/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA 
Sbjct: 1   SIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD++V
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYG+G +  GELIDLGVK  +VDK+GA
Sbjct: 239 MYGQGFNREGELIDLGVKHKLVDKAGA 265


>gi|58415367|emb|CAH57098.1| recA protein [Vibrio aerogenes]
          Length = 265

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 178/267 (66%), Positives = 225/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRAM--DVESVSTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCLCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKVAAPFKEANTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYG+G +  GEL+DLGVK  +++K+GA
Sbjct: 239 MYGQGFNREGELVDLGVKHKMIEKAGA 265


>gi|58415427|emb|CAH57128.1| recA protein [Vibrio cincinnatiensis]
          Length = 265

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 183/267 (68%), Positives = 225/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA 
Sbjct: 1   SIMKLGDNRAM--DVETVSTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLECIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD IYARKLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV
Sbjct: 59  AQKNGKTCAFIDAEHALDPIYARKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QARL+SQ++RK+T ++  S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARLLSQSMRKMTGNLKASNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GELIDLGVK  +++K+GA
Sbjct: 239 LYGQGFNREGELIDLGVKHKLIEKAGA 265


>gi|223470148|gb|ACM90401.1| recombinase A [Streptococcus salivarius]
          Length = 280

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 171/282 (60%), Positives = 222/282 (78%), Gaps = 6/282 (2%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           + +GKGA+M LG +    + ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+A
Sbjct: 1   KEFGKGAVMXLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVA 58

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SG
Sbjct: 59  LHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSG 118

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           AVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R
Sbjct: 119 AVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLR 178

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMA 260
            K+G+MFG+PETT GG ALKFY+SVRLD+R    IK     KD   G +T++KVVKNK+A
Sbjct: 179 EKVGIMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDKKDQNVGKETKIKVVKNKVA 238

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
            PFK+   +IMYGEGIS  GEL+ +     I+ K+GAWFS+ 
Sbjct: 239 PPFKEAFVEIMYGEGISQTGELVKIASDLGIIQKAGAWFSYN 280


>gi|58415347|emb|CAH57088.1| recA protein [Photobacterium rosenbergii]
 gi|58415349|emb|CAH57089.1| recA protein [Photobacterium rosenbergii]
 gi|58415351|emb|CAH57090.1| recA protein [Photobacterium rosenbergii]
 gi|58415353|emb|CAH57091.1| recA protein [Photobacterium rosenbergii]
          Length = 265

 Score =  275 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 185/267 (69%), Positives = 227/267 (85%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD IYARKLGVD+  LL+SQPDTGEQALEI D L RSGAVDI+V
Sbjct: 59  AQKQGKTCAFIDAEHALDPIYARKLGVDIDQLLVSQPDTGEQALEIADALARSGAVDILV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RK+T ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKITGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G + +GELIDLGVK  +V+K+GA
Sbjct: 239 LYGKGFNRYGELIDLGVKNKLVEKAGA 265


>gi|6694851|gb|AAF25436.1|AF214789_1 RecA protein [Arthrobacter oxydans]
          Length = 254

 Score =  275 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 170/254 (66%), Positives = 211/254 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAE
Sbjct: 1   IEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA KLGVD   LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIE
Sbjct: 61  HALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG+S  G+QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALK
Sbjct: 121 GDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALK 180

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+S+R+D+RR+ ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS  G +ID
Sbjct: 181 FYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQGISREGGIID 240

Query: 285 LGVKASIVDKSGAW 298
           +GV+  I+ KSG+W
Sbjct: 241 MGVEHGIIKKSGSW 254


>gi|6694810|gb|AAF25395.1|AF214748_1 RecA protein [Arthrobacter sp. 'SMCC ZAT004']
          Length = 256

 Score =  275 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 169/255 (66%), Positives = 211/255 (82%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DA
Sbjct: 2   PIEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD  YA KLGVD   LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEI
Sbjct: 62  EHALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEI 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EGDMG+S  G+QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG AL
Sbjct: 122 EGDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKAL 181

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+S+R+D+RR+ ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS  G +I
Sbjct: 182 KFYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQGISREGGII 241

Query: 284 DLGVKASIVDKSGAW 298
           D+GV+  ++ KSG+W
Sbjct: 242 DMGVEHGLIKKSGSW 256


>gi|260656832|gb|ACX47806.1| recombinase A [Vibrio casei]
          Length = 265

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 182/267 (68%), Positives = 227/267 (85%), Gaps = 2/267 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  I
Sbjct: 1   KGSIMKLGDNRTM--DVETISTGSLALDIALGAGGLPMGRIVEVYGPESSGKTTLTLELI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGV++ +LL+SQPDTGEQALEI D L RSGA+D+
Sbjct: 59  AAAQRVGKTCAFIDAEHALDPIYAQKLGVNINDLLVSQPDTGEQALEICDALARSGAIDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG
Sbjct: 119 LVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFGSPETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E 
Sbjct: 179 VMFGSPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAET 238

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKS 295
            I+YG+G +  GELIDLGVK  +V+K+
Sbjct: 239 QILYGKGFNREGELIDLGVKNKLVEKA 265


>gi|290795177|gb|ADD64603.1| RecA recombinase [Vibrio cyclitrophicus]
 gi|290795179|gb|ADD64604.1| RecA recombinase [Vibrio cyclitrophicus]
 gi|290795181|gb|ADD64605.1| RecA recombinase [Vibrio cyclitrophicus]
 gi|290795183|gb|ADD64606.1| RecA recombinase [Vibrio cyclitrophicus]
 gi|290795185|gb|ADD64607.1| RecA recombinase [Vibrio cyclitrophicus]
          Length = 264

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 184/266 (69%), Positives = 225/266 (84%), Gaps = 2/266 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +
Sbjct: 1   IMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VI
Sbjct: 59  QKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVI 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMF
Sbjct: 119 DSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I+
Sbjct: 179 GNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQIL 238

Query: 272 YGEGISFFGELIDLGVKASIVDKSGA 297
           YG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 YGKGFNREGELIDLGVKNKLVEKAGA 264


>gi|304564677|gb|ADM45202.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 263

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 176/265 (66%), Positives = 223/265 (84%), Gaps = 2/265 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH
Sbjct: 1   FGKGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALH 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAV
Sbjct: 59  MIAEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAV 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           DIIVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K
Sbjct: 119 DIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           +GVMFG+PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ 
Sbjct: 179 VGVMFGNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQA 238

Query: 267 EFDIMYGEGISFFGELIDLGVKASI 291
           EFDIMYGEGIS  G ++D+G    I
Sbjct: 239 EFDIMYGEGISREGSILDIGASIDI 263


>gi|304564641|gb|ADM45184.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 263

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 175/265 (66%), Positives = 222/265 (83%), Gaps = 2/265 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLAL
Sbjct: 1   QFGKGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLAL 58

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
           H IA++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGA
Sbjct: 59  HMIAEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGA 118

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           VDIIVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R 
Sbjct: 119 VDIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLRE 178

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           K+GVMFG+PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ
Sbjct: 179 KVGVMFGNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQ 238

Query: 266 VEFDIMYGEGISFFGELIDLGVKAS 290
            EFDIMYGEGIS  G ++D+G    
Sbjct: 239 AEFDIMYGEGISREGSILDIGASID 263


>gi|238828571|gb|ACR61179.1| RecA [Vibrionaceae bacterium AVA1]
          Length = 264

 Score =  274 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 186/265 (70%), Positives = 227/265 (85%), Gaps = 2/265 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   IE VS+GSL LDIALG+GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 2   KGSIMRLGDDRTM--DIETVSTGSLSLDIALGVGGLPYGRIVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK G TCAF+DAEHALD +YARKL VD+ NLL+SQPDTGEQALEI D L RSGAVD+
Sbjct: 60  AEAQKQGKTCAFIDAEHALDPVYARKLNVDIDNLLVSQPDTGEQALEIADALTRSGAVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT +I  S  +++FINQ+RMKIG
Sbjct: 120 IIVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNIKNSNTLMIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TRVKVVKNK+A+PFKQ EF
Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRVKVVKNKVAAPFKQAEF 239

Query: 269 DIMYGEGISFFGELIDLGVKASIVD 293
            I+YG+GI+  GEL+DLGVK  +V+
Sbjct: 240 QILYGQGINLLGELVDLGVKDKLVE 264


>gi|54792188|emb|CAE54410.1| recombination-repair protein [Vibrio cholerae]
 gi|54792190|emb|CAE54411.1| recombination-repair protein [Vibrio cholerae]
 gi|58415405|emb|CAH57117.1| recA protein [Vibrio cholerae]
 gi|58415407|emb|CAH57118.1| recA protein [Vibrio cholerae]
          Length = 260

 Score =  274 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 175/262 (66%), Positives = 221/262 (84%), Gaps = 2/262 (0%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           + +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL 
Sbjct: 1   KQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLT 58

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSG
Sbjct: 59  LELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSG 118

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           AVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+R
Sbjct: 119 AVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIR 178

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK
Sbjct: 179 MKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFK 238

Query: 265 QVEFDIMYGEGISFFGELIDLG 286
           +    IMYG+G +  GELIDLG
Sbjct: 239 EANTQIMYGQGFNREGELIDLG 260


>gi|54792467|emb|CAE45613.1| recombination-repair protein [Vibrio xuii]
 gi|58415688|emb|CAH57258.1| recA protein [Vibrio xuii]
          Length = 258

 Score =  274 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 177/260 (68%), Positives = 221/260 (85%), Gaps = 2/260 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELIDLG 286
           E  I+YG+G +  GELIDLG
Sbjct: 239 ETQILYGQGFNREGELIDLG 258


>gi|58415365|emb|CAH57097.1| recA protein [Salinivibrio costicola subsp. costicola]
          Length = 265

 Score =  274 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 191/267 (71%), Positives = 231/267 (86%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   IE VS+GSL LDIALG GG P GRI+EIYGPESSGKTTL L  IA+
Sbjct: 1   SIMRLGDDRTM--DIETVSTGSLSLDIALGAGGLPFGRIIEIYGPESSGKTTLTLEAIAE 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD IYARKLGVD+ NLL+SQPDTGEQALEI D L RSGAVD+IV
Sbjct: 59  AQKKGKTCAFIDAEHALDPIYARKLGVDIDNLLVSQPDTGEQALEIADALTRSGAVDMIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT++I  S  ++VFINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTANIKNSNTMMVFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+TRVKVVKNK+A+PFKQ EF I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNETRVKVVKNKVAAPFKQAEFQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+GI+  GEL+DLGVK  +V+K+GA
Sbjct: 239 LYGQGINLQGELVDLGVKHKLVEKAGA 265


>gi|58415560|emb|CAH57194.1| recA protein [Vibrio metschnikovii]
 gi|58415562|emb|CAH57195.1| recA protein [Vibrio metschnikovii]
          Length = 265

 Score =  274 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 179/267 (67%), Positives = 224/267 (83%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMLLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAS 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGV + +LL+SQPDTGEQALEI D L RSGAVD+IV
Sbjct: 59  AQREGKTCAFIDAEHALDPIYAQKLGVKINDLLVSQPDTGEQALEICDALARSGAVDVIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYG+G +  GEL+DLGVK  +++KSGA
Sbjct: 239 MYGQGFNREGELVDLGVKHKLIEKSGA 265


>gi|54792178|emb|CAE54405.1| recombination-repair protein [Vibrio chagasii]
          Length = 257

 Score =  274 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 179/259 (69%), Positives = 219/259 (84%), Gaps = 2/259 (0%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           + +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL 
Sbjct: 1   KQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLT 58

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSG
Sbjct: 59  LELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSG 118

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+R
Sbjct: 119 AIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIR 178

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFK
Sbjct: 179 MKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFK 238

Query: 265 QVEFDIMYGEGISFFGELI 283
           Q E  I+YG+G +  GELI
Sbjct: 239 QAETQILYGQGFNREGELI 257


>gi|291002572|gb|ADD71491.1| RecA recombinase [Vibrio cyclitrophicus]
          Length = 264

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 182/266 (68%), Positives = 225/266 (84%), Gaps = 2/266 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  I+ +
Sbjct: 1   IMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELISAA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VI
Sbjct: 59  QKVGKTCAFIDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVI 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMF
Sbjct: 119 DSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I+
Sbjct: 179 GNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQIL 238

Query: 272 YGEGISFFGELIDLGVKASIVDKSGA 297
           YG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 YGKGFNREGELIDLGVKNKLVEKAGA 264


>gi|58415345|emb|CAH57087.1| recA protein [Photobacterium damselae subsp. damselae]
          Length = 265

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 182/267 (68%), Positives = 225/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA 
Sbjct: 1   SIMKLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLEVIAS 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGAVD+IV
Sbjct: 59  AQKEGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEICDALARSGAVDVIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QARL+SQ++RK+T ++  S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARLLSQSMRKMTGNLKASNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ +  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQADTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G +  GELIDLGVK  +V+K+GA
Sbjct: 239 LYGQGFNRNGELIDLGVKHKLVEKAGA 265


>gi|58415564|emb|CAH57196.1| recA protein [Vibrio metschnikovii]
          Length = 265

 Score =  274 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 178/267 (66%), Positives = 224/267 (83%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMLLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAS 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGV + +LL+SQPDTGEQALEI D L RSGAVD+IV
Sbjct: 59  AQREGKTCAFIDAEHALDPIYAQKLGVKINDLLVSQPDTGEQALEICDALARSGAVDVIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           MYG+G +  GEL+DLGVK  +++KSGA
Sbjct: 239 MYGQGFNREGELVDLGVKHKLIEKSGA 265


>gi|54792481|emb|CAE45620.1| recombination-repair protein [Vibrio tasmaniensis]
 gi|58415660|emb|CAH57244.1| recA protein [Vibrio tasmaniensis]
          Length = 258

 Score =  274 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 180/260 (69%), Positives = 221/260 (85%), Gaps = 2/260 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELIDLG 286
           E  I+YG+G +  GELIDLG
Sbjct: 239 ETQILYGKGFNREGELIDLG 258


>gi|54792457|emb|CAE45608.1| recombination-repair protein [Vibrio neptunius]
 gi|58415586|emb|CAH57207.1| recA protein [Vibrio neptunius]
          Length = 258

 Score =  274 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 178/260 (68%), Positives = 220/260 (84%), Gaps = 2/260 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELIDLG 286
           E  IMYG G +  GELIDLG
Sbjct: 239 ETQIMYGAGFNREGELIDLG 258


>gi|304564525|gb|ADM45126.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564531|gb|ADM45129.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564537|gb|ADM45132.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 263

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 176/265 (66%), Positives = 223/265 (84%), Gaps = 2/265 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK
Sbjct: 1   RLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQK 58

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDS
Sbjct: 59  MGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDS 118

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           VAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+
Sbjct: 119 VAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGN 178

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYG
Sbjct: 179 PETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYG 238

Query: 274 EGISFFGELIDLGVKASIVDKSGAW 298
           EGIS  G ++D+G    I++KSGAW
Sbjct: 239 EGISREGSILDIGASIDIIEKSGAW 263


>gi|189308779|gb|ACD87091.1| RecA [Vibrio sp. PP-204]
          Length = 259

 Score =  273 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 176/258 (68%), Positives = 218/258 (84%), Gaps = 2/258 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L
Sbjct: 4   QFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTL 61

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA
Sbjct: 62  ELIAAAQRVGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGA 121

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RM
Sbjct: 122 IDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRM 181

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIKD D I GN+TR+KVVKNK+A+PFKQ
Sbjct: 182 KIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEIVGNETRIKVVKNKIAAPFKQ 241

Query: 266 VEFDIMYGEGISFFGELI 283
            E  I+YG+G +  GELI
Sbjct: 242 AETQILYGQGFNREGELI 259


>gi|58415423|emb|CAH57126.1| recA protein [Vibrio cincinnatiensis]
          Length = 265

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 181/267 (67%), Positives = 225/267 (84%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA 
Sbjct: 1   SIMKLGDNRAM--DVETVSTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLECIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD IYARKLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV
Sbjct: 59  AQKNGKTCAFIDAEHALDPIYARKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QARL+SQ++RK+T ++  S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARLLSQSMRKMTGNLKASNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G + +GELIDLGVK  +V+K+GA
Sbjct: 239 LYGKGFNRYGELIDLGVKHKLVEKAGA 265


>gi|54792443|emb|CAE45601.1| recombination-repair protein [Vibrio pacinii]
 gi|58415602|emb|CAH57215.1| recA protein [Vibrio pacinii]
          Length = 256

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 178/258 (68%), Positives = 219/258 (84%), Gaps = 2/258 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIKD D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELID 284
           E  I+YG+G +  GELID
Sbjct: 239 ETQILYGQGFNREGELID 256


>gi|304564629|gb|ADM45178.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 262

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 175/264 (66%), Positives = 222/264 (84%), Gaps = 2/264 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH
Sbjct: 1   FGKGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALH 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAV
Sbjct: 59  MIAEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAV 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           DIIVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K
Sbjct: 119 DIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           +GVMFG+PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ 
Sbjct: 179 VGVMFGNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQA 238

Query: 267 EFDIMYGEGISFFGELIDLGVKAS 290
           EFDIMYGEGIS  G ++D+G    
Sbjct: 239 EFDIMYGEGISREGSILDIGASID 262


>gi|121544230|gb|ABM55726.1| RecA [Vibrio sp. RLUH-CZ]
          Length = 256

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 178/258 (68%), Positives = 219/258 (84%), Gaps = 2/258 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  CIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELID 284
           E  IMYG+G +  GELID
Sbjct: 239 ETQIMYGQGFNREGELID 256


>gi|54792493|emb|CAE45626.1| recombination-repair protein [Vibrio shilonii AK1]
          Length = 256

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 178/258 (68%), Positives = 221/258 (85%), Gaps = 2/258 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +QK G TCAF+DAEHALD IYA+KLGVD+ +LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  CIAAAQKQGKTCAFIDAEHALDPIYAKKLGVDIDSLLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELID 284
           E  I+YG+G + +GELID
Sbjct: 239 ETQILYGQGFNRYGELID 256


>gi|54792495|emb|CAE45627.1| recombination-repair protein [Vibrio nigripulchritudo]
 gi|58415590|emb|CAH57209.1| recA protein [Vibrio nigripulchritudo]
          Length = 256

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 179/258 (69%), Positives = 220/258 (85%), Gaps = 2/258 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD IYA+KLGVD++ LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIEALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIKD D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELID 284
           E  IMYG+G +  GELID
Sbjct: 239 ETQIMYGQGFNREGELID 256


>gi|54792174|emb|CAE54403.1| recombination-repair protein [Listonella pelagia]
 gi|58415620|emb|CAH57224.1| recA protein [Listonella pelagia]
          Length = 256

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 179/258 (69%), Positives = 219/258 (84%), Gaps = 2/258 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQREGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELID 284
           E  I+YG+G +  GELID
Sbjct: 239 ETQILYGQGFNREGELID 256


>gi|215271700|emb|CAR57883.1| recombination-repair protein [Vibrio cholerae]
          Length = 262

 Score =  272 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 175/264 (66%), Positives = 220/264 (83%), Gaps = 2/264 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAV
Sbjct: 59  LIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAV 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEA 238

Query: 267 EFDIMYGEGISFFGELIDLGVKAS 290
              I  G+G +  GELIDLGVK  
Sbjct: 239 NTQIRNGQGFNREGELIDLGVKHK 262


>gi|54792461|emb|CAE45610.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|54792465|emb|CAE45612.1| recombination-repair protein [Vibrio rotiferianus]
 gi|58415632|emb|CAH57230.1| recA protein [Vibrio rotiferianus]
          Length = 258

 Score =  272 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 176/260 (67%), Positives = 220/260 (84%), Gaps = 2/260 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEA 238

Query: 267 EFDIMYGEGISFFGELIDLG 286
              IMYG+G +  GELIDLG
Sbjct: 239 NTQIMYGQGFNREGELIDLG 258


>gi|54792471|emb|CAE45615.1| recombination-repair protein [Vibrio chagasii]
 gi|58415397|emb|CAH57113.1| recA protein [Vibrio chagasii]
          Length = 256

 Score =  272 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 180/258 (69%), Positives = 219/258 (84%), Gaps = 2/258 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELID 284
           E  I+YG+G +  GELID
Sbjct: 239 ETQILYGQGFNREGELID 256


>gi|159146610|gb|ABW90749.1| recombinase A [Photobacterium damselae]
          Length = 265

 Score =  272 bits (694), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 181/267 (67%), Positives = 227/267 (85%), Gaps = 2/267 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA 
Sbjct: 1   SIMKLGDNRTM--DVETVSTGSLALDIALGAGGLPMGRIVEIFGPESSGKTTLTLEVIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+DI+V
Sbjct: 59  AQREGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDILV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFKQ +  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKQADTQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297
           +YG+G + +GELIDLGVK  +V+K+GA
Sbjct: 239 LYGKGFNRYGELIDLGVKNKLVEKAGA 265


>gi|54792485|emb|CAE45622.1| recombination-repair protein [Vibrio tubiashii]
 gi|54792487|emb|CAE45623.1| recombination-repair protein [Vibrio brasiliensis]
 gi|54792515|emb|CAE45637.1| recombination-repair protein [Vibrio cholerae]
 gi|58415383|emb|CAH57106.1| recA protein [Vibrio brasiliensis LMG 20546]
          Length = 256

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 177/258 (68%), Positives = 218/258 (84%), Gaps = 2/258 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  CIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELID 284
           E  I+YG G +  GELID
Sbjct: 239 ETQILYGAGFNREGELID 256


>gi|304564521|gb|ADM45124.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 262

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 176/264 (66%), Positives = 222/264 (84%), Gaps = 2/264 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK 
Sbjct: 1   LGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKM 58

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSV
Sbjct: 59  GGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSV 118

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+P
Sbjct: 119 AALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNP 178

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           ETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGE
Sbjct: 179 ETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGE 238

Query: 275 GISFFGELIDLGVKASIVDKSGAW 298
           GIS  G ++D+G    I++KSGAW
Sbjct: 239 GISREGSILDIGASIDIIEKSGAW 262


>gi|229487126|emb|CAX33875.1| recombinase A [Pseudochrobactrum sp. Sa 25]
          Length = 247

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 205/247 (82%), Positives = 232/247 (93%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +GSL LDIALG+GG PKGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD
Sbjct: 1   PTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTIAEAQKKGGMCAFVDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGVDL++LLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIEGDMG
Sbjct: 61  PVYARKLGVDLESLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGDMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +SLPG+QARLMSQALRKLT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+S
Sbjct: 121 DSLPGLQARLMSQALRKLTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           VRLDIRR+G+IKD+D + GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVK
Sbjct: 181 VRLDIRRIGAIKDRDEVVGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVK 240

Query: 289 ASIVDKS 295
           A IV+K+
Sbjct: 241 AGIVEKA 247


>gi|320539039|ref|ZP_08038713.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Serratia symbiotica str. Tucson]
 gi|320030879|gb|EFW12884.1| DNA strand exchange and recombination protein with protease and
           nuclease activity [Serratia symbiotica str. Tucson]
          Length = 294

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 178/296 (60%), Positives = 231/296 (78%), Gaps = 4/296 (1%)

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQP
Sbjct: 1   RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQP 60

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D L RSGA+D+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL 
Sbjct: 61  DTGEQALEICDALTRSGAIDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 120

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++  +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D + G
Sbjct: 121 GNLKNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDEVVG 180

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           ++TRVKVVKNK+A+PFKQ EF IMYGEGI+  GEL+DLGVK  +++K+GAW+S+ G+++G
Sbjct: 181 SETRVKVVKNKIAAPFKQAEFQIMYGEGINSRGELVDLGVKHKMIEKAGAWYSYNGEKIG 240

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           QG+ N+  FL+EN  IA  ++         +      E      +D   D+ +  E
Sbjct: 241 QGKANACNFLKENPAIAAELDK----KLRDLLLHNTGERVAAISEDTGGDEAETSE 292


>gi|54792497|emb|CAE45628.1| recombination-repair protein [Vibrio navarrensis]
 gi|58415578|emb|CAH57203.1| recA protein [Vibrio navarrensis]
          Length = 257

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 176/259 (67%), Positives = 219/259 (84%), Gaps = 2/259 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAV
Sbjct: 59  LIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDQLLVSQPDTGEQALEICDALARSGAV 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFK+ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKEA 238

Query: 267 EFDIMYGEGISFFGELIDL 285
              IMYG+G +  GELIDL
Sbjct: 239 NTQIMYGQGFNREGELIDL 257


>gi|54792473|emb|CAE45616.1| recombination-repair protein [Vibrio pomeroyi]
 gi|54792477|emb|CAE45618.1| recombination-repair protein [Vibrio lentus]
 gi|54792479|emb|CAE45619.1| recombination-repair protein [Vibrio lentus]
 gi|58415536|emb|CAH57182.1| recA protein [Vibrio lentus]
 gi|58415624|emb|CAH57226.1| recA protein [Vibrio pomeroyi]
          Length = 256

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 179/258 (69%), Positives = 219/258 (84%), Gaps = 2/258 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELID 284
           E  I+YG+G +  GELID
Sbjct: 239 ETQILYGKGFNREGELID 256


>gi|54792505|emb|CAE45632.1| recombination-repair protein [Vibrio mimicus]
          Length = 258

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 175/260 (67%), Positives = 220/260 (84%), Gaps = 2/260 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAV
Sbjct: 59  LIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAV 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEA 238

Query: 267 EFDIMYGEGISFFGELIDLG 286
              IMYG+G +  GELIDLG
Sbjct: 239 NTQIMYGQGFNREGELIDLG 258


>gi|304564743|gb|ADM45235.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 262

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 175/264 (66%), Positives = 222/264 (84%), Gaps = 2/264 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH I
Sbjct: 1   KGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDI
Sbjct: 59  AEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDI 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+G
Sbjct: 119 IVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EF
Sbjct: 179 VMFGNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEF 238

Query: 269 DIMYGEGISFFGELIDLGVKASIV 292
           DIMYGEGIS  G ++D+G    I+
Sbjct: 239 DIMYGEGISREGSILDIGASIDII 262


>gi|290795187|gb|ADD64608.1| RecA recombinase [Vibrio cyclitrophicus]
          Length = 262

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 182/264 (68%), Positives = 223/264 (84%), Gaps = 2/264 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +
Sbjct: 1   IMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VI
Sbjct: 59  QKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVI 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMF
Sbjct: 119 DSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I+
Sbjct: 179 GNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQIL 238

Query: 272 YGEGISFFGELIDLGVKASIVDKS 295
           YG+G +  GELIDLGVK  +V+K+
Sbjct: 239 YGKGFNREGELIDLGVKNKLVEKA 262


>gi|293363970|ref|ZP_06610706.1| RecA protein [Mycoplasma alligatoris A21JP2]
 gi|292552460|gb|EFF41234.1| RecA protein [Mycoplasma alligatoris A21JP2]
          Length = 327

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 164/331 (49%), Positives = 237/331 (71%), Gaps = 7/331 (2%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M    + NI+     ++ ALS I + +GK +IM LG    I   I+  SSGS  LD  LG
Sbjct: 1   MKDENQKNII-----IKEALSSIGKKFGKESIMLLGGVPDI--SIDTFSSGSYALDKILG 53

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGGFPKGR++EIYGPESSGKTT+ LH IA+ QK GG  AF+DAEH++D +YA  +GVD+ 
Sbjct: 54  IGGFPKGRVIEIYGPESSGKTTVCLHAIAEIQKKGGIAAFIDAEHSIDPVYASNIGVDVD 113

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL++SQPD+GEQALEI D+L ++G +D+IV+DSVAAL P AE+ GDM +   GMQARLMS
Sbjct: 114 NLILSQPDSGEQALEIVDILAKNGNIDLIVVDSVAALVPEAELNGDMKDQQIGMQARLMS 173

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           +ALRK+  +++++K  ++FINQ+R K+GV+FG+PETT+GG ALKFYSS+R+++R+  SI 
Sbjct: 174 KALRKIAGNLNKNKTTVIFINQIREKVGVIFGNPETTSGGRALKFYSSIRVEVRKGTSIT 233

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D   I GN+ + KVVKNK+A+P+K    +I++ +GI+   EL++  ++  +V K  AW+S
Sbjct: 234 DTKDIIGNEVKFKVVKNKLAAPYKSAVSEIIFSKGINKTNELLNFAIEKGLVIKKAAWYS 293

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLL 331
              + + QG++  + ++ ENIE   ++   L
Sbjct: 294 IDEKNVAQGQKAMEAYIEENIEFKNDLLKKL 324


>gi|301335042|emb|CBW30484.1| recombinase A [Ochrobactrum sp. 08RB2639]
 gi|301335044|emb|CBW30485.1| recombinase A [Ochrobactrum sp. 08RB2781-1]
          Length = 247

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 206/247 (83%), Positives = 232/247 (93%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VS+GSL LDIALG+GG PKGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEH
Sbjct: 1   ETVSTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIEG
Sbjct: 61  ALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +MG+SLPG+QARLMSQALRKLT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKF
Sbjct: 121 EMGDSLPGLQARLMSQALRKLTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKF 180

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           Y+SVRLDIRR+GSIK++D + GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DL
Sbjct: 181 YASVRLDIRRIGSIKERDEVVGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDL 240

Query: 286 GVKASIV 292
           GVKA +V
Sbjct: 241 GVKAGVV 247


>gi|6694803|gb|AAF25388.1|AF214741_1 RecA protein [Arthrobacter sp. 'SMCC G984']
          Length = 255

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 169/254 (66%), Positives = 210/254 (82%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DA
Sbjct: 2   PIEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD  YA KLGVD   LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEI
Sbjct: 62  EHALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEI 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EGDMG+S  G+QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG AL
Sbjct: 122 EGDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKAL 181

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+S+R+D+RR+ ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS  G +I
Sbjct: 182 KFYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQGISREGGII 241

Query: 284 DLGVKASIVDKSGA 297
           D+GV+  I+ KSG+
Sbjct: 242 DMGVEHGIIKKSGS 255


>gi|294155460|ref|YP_003559844.1| Recombinase protein RecA [Mycoplasma crocodyli MP145]
 gi|291600107|gb|ADE19603.1| Recombinase protein RecA [Mycoplasma crocodyli MP145]
          Length = 327

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 156/325 (48%), Positives = 238/325 (73%), Gaps = 2/325 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           +   +K+  ++ AL+ I + +GK +IM LGS   +   I+  SSGS  L+  LG+GGFPK
Sbjct: 2   IKEEEKNIIIKEALNAIGKKFGKESIMLLGSVTDVT--IDTFSSGSHSLNKILGVGGFPK 59

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPESSGKTT+ LH IA+ QK GG  AF+DAEH++D  YA  +GV +  L++SQ
Sbjct: 60  GRIIEIYGPESSGKTTVCLHAIAEIQKKGGLAAFIDAEHSIDPNYASNIGVKVDELILSQ 119

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+GEQALEI D+L RSG +D+IV+DSVAAL P AE++G+M +   G QARLMS+ALRK+
Sbjct: 120 PDSGEQALEIVDLLARSGNIDLIVVDSVAALVPEAELQGEMKDQQIGTQARLMSKALRKI 179

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
             +++++K  ++F+NQ+R K+GV+FG+PETT+GG ALKFY+S+R+++R+  +I D   I 
Sbjct: 180 AGTLNKNKTTVIFVNQIREKVGVIFGNPETTSGGRALKFYASIRVEVRKGANISDSKDIV 239

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           GN+ + KVVKNK+A+P+K    +I++  GI+   ELIDL ++A+++ K G+W+S   + +
Sbjct: 240 GNEIKFKVVKNKLAAPYKSATSEIIFSRGINATKELIDLAIEANLISKKGSWYSIDDKNV 299

Query: 307 GQGRENSKIFLRENIEIAENIESLL 331
            QG ++ + ++ +NI++  ++   L
Sbjct: 300 AQGEKSLEAYIEDNIDLKNDLMKKL 324


>gi|179184957|gb|ACB78165.1| RecA [Vibrio gallaecicus]
          Length = 262

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 183/264 (69%), Positives = 223/264 (84%), Gaps = 2/264 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LD+ALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDVALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDK 294
           +YG+G +  GELIDLGVK  +VDK
Sbjct: 239 LYGQGFNREGELIDLGVKNKLVDK 262


>gi|54792475|emb|CAE45617.1| recombination-repair protein [Vibrio splendidus]
          Length = 255

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 177/257 (68%), Positives = 218/257 (84%), Gaps = 2/257 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELI 283
           E  I+YG+G +  GELI
Sbjct: 239 ETQILYGKGFNREGELI 255


>gi|54792164|emb|CAE54398.1| recombination-repair protein [Vibrio coralliilyticus]
 gi|58415437|emb|CAH57133.1| recA protein [Vibrio coralliilyticus]
          Length = 255

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 175/257 (68%), Positives = 217/257 (84%), Gaps = 2/257 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELI 283
           E  IMYG G +  GELI
Sbjct: 239 ETQIMYGAGFNREGELI 255


>gi|54792451|emb|CAE45605.1| recombination-repair protein [Vibrio diazotrophicus]
 gi|54792453|emb|CAE45606.1| recombination-repair protein [Vibrio diazotrophicus]
 gi|58415453|emb|CAH57141.1| recA protein [Vibrio diazotrophicus]
          Length = 256

 Score =  270 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 176/258 (68%), Positives = 219/258 (84%), Gaps = 2/258 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD IYARKLGV++  LL+SQPDTGEQALEI D L RSGAV
Sbjct: 59  LIAAAQRVGKTCAFIDAEHALDPIYARKLGVNIDELLVSQPDTGEQALEICDALARSGAV 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELID 284
           +  I+YG+G +  GELID
Sbjct: 239 DTQILYGQGFNREGELID 256


>gi|223470138|gb|ACM90396.1| recombinase A [Streptococcus salivarius]
 gi|223470154|gb|ACM90404.1| recombinase A [Streptococcus vestibularis ATCC 49124]
 gi|223470156|gb|ACM90405.1| recombinase A [Streptococcus vestibularis]
          Length = 276

 Score =  270 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 170/278 (61%), Positives = 220/278 (79%), Gaps = 6/278 (2%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           GA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +A
Sbjct: 1   GAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           Q+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++
Sbjct: 59  QTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLV 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+G+
Sbjct: 119 VVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGI 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQ 265
           MFG+PETT GG ALKFY+SVRLD+R    IK     KD   G +T++KVVKNK+A PFK+
Sbjct: 179 MFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDKKDQNVGKETKIKVVKNKVAPPFKE 238

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
              +IMYGEGIS  GEL+ +     I+ K+GAWFS+ G
Sbjct: 239 AFVEIMYGEGISQTGELVKIASDLGIIQKAGAWFSYNG 276


>gi|179185261|gb|ACB78176.1| RecA [Aliivibrio finisterrensis]
          Length = 262

 Score =  270 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 180/264 (68%), Positives = 223/264 (84%), Gaps = 2/264 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA 
Sbjct: 1   SIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD++V
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVIGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDK 294
           +YG+G +  GELIDLGVK  +VDK
Sbjct: 239 LYGKGFNREGELIDLGVKHKLVDK 262


>gi|54792154|emb|CAE54393.1| recombination-repair protein [Photobacterium angustum]
 gi|58415339|emb|CAH57084.1| recA protein [Photobacterium angustum]
          Length = 255

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 179/257 (69%), Positives = 219/257 (85%), Gaps = 2/257 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGAV
Sbjct: 59  TIAAAQRKGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEICDALARSGAV 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELI 283
           E  I+YG+G +  GELI
Sbjct: 239 ETQILYGQGFNRNGELI 255


>gi|117675773|emb|CAL69157.1| recombinase A [Agrococcus jenensis]
          Length = 251

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 176/251 (70%), Positives = 208/251 (82%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           + V+ +GS+ LD+ALG+GG P+GRIVEIYGPESSGKTTL LH IA +Q+ GG  AF+DAE
Sbjct: 1   VAVIPTGSIALDVALGVGGLPRGRIVEIYGPESSGKTTLTLHAIANAQRAGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA KLGVD+  LL+SQPDTGEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIE
Sbjct: 61  HALDPDYAAKLGVDIDALLVSQPDTGEQALEIADMLVRSGAIDLIVIDSVAALVPRAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKLT  ++++   ++FINQ+R KIGV FGSPETT GG ALK
Sbjct: 121 GEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLREKIGVFFGSPETTAGGKALK 180

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA PFKQ EFDI+YG GIS  G LID
Sbjct: 181 FYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKMAPPFKQAEFDILYGIGISREGSLID 240

Query: 285 LGVKASIVDKS 295
            GV+ +IV KS
Sbjct: 241 FGVEHAIVKKS 251


>gi|54792459|emb|CAE45609.1| recombination-repair protein [Vibrio natriegens]
 gi|58415576|emb|CAH57202.1| recA protein [Vibrio natriegens]
          Length = 256

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 172/258 (66%), Positives = 218/258 (84%), Gaps = 2/258 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEA 238

Query: 267 EFDIMYGEGISFFGELID 284
              IMYG+G +  GEL+D
Sbjct: 239 NTQIMYGQGFNREGELVD 256


>gi|117675761|emb|CAL69151.1| recombinase A [Subtercola frigoramans]
          Length = 251

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 174/251 (69%), Positives = 210/251 (83%)

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEIYGPESSGKTTL LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPD
Sbjct: 1   IVEIYGPESSGKTTLTLHAIANAQRGGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPD 60

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DMLVRSG++D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT 
Sbjct: 61  TGEQALEIADMLVRSGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTG 120

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            ++++   ++FINQ+R KIGV FGSPETT GG ALKFY+S+RLDIRR+ ++K+     GN
Sbjct: 121 GLNQTNTTMIFINQLREKIGVFFGSPETTAGGKALKFYASIRLDIRRIETLKEGTEAVGN 180

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
           +TRVKVVKNKMA PFKQ EFDI+YG GIS  G LID GV+  IV KSGAW+++ G++LGQ
Sbjct: 181 RTRVKVVKNKMAPPFKQAEFDIIYGIGISREGSLIDFGVEHEIVRKSGAWYTYDGEQLGQ 240

Query: 309 GRENSKIFLRE 319
           G+ENS+ FL+E
Sbjct: 241 GKENSRRFLKE 251


>gi|56606865|gb|AAW02817.1| recombinase A [Bibersteinia trehalosi]
          Length = 270

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 192/272 (70%), Positives = 228/272 (83%), Gaps = 2/272 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           +M LG   ++   IE VS+GS+GLD+ALGIGG P GRIVEI+GPESSGKTTL L  IAQ+
Sbjct: 1   VMTLGQTQTL--DIEAVSTGSIGLDLALGIGGLPMGRIVEIFGPESSGKTTLTLSLIAQA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QKT  TCAF+DAEHALD +YARKLGV+   LLISQPD GEQALEI D LVRSGAVD+I++
Sbjct: 59  QKTDKTCAFIDAEHALDPVYARKLGVNTDKLLISQPDNGEQALEICDALVRSGAVDVIIV 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLT++I  + C++VFINQ+RMKIGVMF
Sbjct: 119 DSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIKNTNCLVVFINQIRMKIGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETTTGGNALKFYSSVRLDIRR G +K+ D I GNQT+VKVVKNK+A PF++V FDIM
Sbjct: 179 GNPETTTGGNALKFYSSVRLDIRRAGVVKEGDEILGNQTKVKVVKNKVAPPFREVMFDIM 238

Query: 272 YGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
           YG+GIS   EL+ L     ++ KSGAWFS++G
Sbjct: 239 YGQGISRMSELLILAEAQGLIKKSGAWFSYEG 270


>gi|269784292|emb|CBH50791.1| recA protein [Vibrio sp. C 15.19]
          Length = 252

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 180/252 (71%), Positives = 217/252 (86%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +QK G TCAFVDAEHALD I
Sbjct: 1   GSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPI 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIEG+MG+S
Sbjct: 61  YAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGDS 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
             G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR
Sbjct: 121 HMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVR 180

Query: 231 LDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS 290
           LDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK  
Sbjct: 181 LDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKNK 240

Query: 291 IVDKSGAWFSFK 302
           +V+K+GAW+S+ 
Sbjct: 241 LVEKAGAWYSYN 252


>gi|54792483|emb|CAE45621.1| recombination-repair protein [Vibrio kanaloae]
          Length = 255

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 178/257 (69%), Positives = 218/257 (84%), Gaps = 2/257 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELI 283
           E  I+YG+G +  GELI
Sbjct: 239 ETQILYGKGFNREGELI 255


>gi|70904849|gb|AAZ14004.1| RecA [Burkholderia cepacia]
          Length = 257

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 177/255 (69%), Positives = 222/255 (87%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG
Sbjct: 1   LQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           ++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+R
Sbjct: 61  SIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIR 120

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF+
Sbjct: 121 MKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFR 180

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           +  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA
Sbjct: 181 EAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIA 240

Query: 325 ENIESLLRQNAGLVA 339
             IE+ +R++  +V+
Sbjct: 241 REIENRIRESLAVVS 255


>gi|304564431|gb|ADM45079.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 261

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 176/263 (66%), Positives = 221/263 (84%), Gaps = 2/263 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH 
Sbjct: 1   GKGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHM 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVD
Sbjct: 59  IAEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           IIVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+
Sbjct: 119 IIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKV 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETT GG ALKFY+++RLD+R+V +IK  + I G++TRVKVVKNK+A PFKQ E
Sbjct: 179 GVMFGNPETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAE 238

Query: 268 FDIMYGEGISFFGELIDLGVKAS 290
           FDIMYGEGIS  G ++D+G    
Sbjct: 239 FDIMYGEGISREGSILDIGASID 261


>gi|6694836|gb|AAF25421.1|AF214774_1 RecA protein [Arthrobacter sp. 'SMCC ZAT056']
          Length = 255

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 168/254 (66%), Positives = 210/254 (82%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DA
Sbjct: 2   PIEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD  YA KLGVD   LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEI
Sbjct: 62  EHALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEI 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EGDMG+S  G+QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG AL
Sbjct: 122 EGDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKAL 181

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+S+R+D+RR+ ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS  G +I
Sbjct: 182 KFYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQGISREGGII 241

Query: 284 DLGVKASIVDKSGA 297
           D+GV+  ++ KSG+
Sbjct: 242 DMGVEHGLIKKSGS 255


>gi|54792499|emb|CAE45629.1| recombination-repair protein [Vibrio vulnificus]
 gi|58415676|emb|CAH57252.1| recA protein [Vibrio vulnificus]
          Length = 256

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 174/258 (67%), Positives = 218/258 (84%), Gaps = 2/258 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAV
Sbjct: 59  LIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDQLLVSQPDTGEQALEICDALARSGAV 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEA 238

Query: 267 EFDIMYGEGISFFGELID 284
              IMYG+G +  GELID
Sbjct: 239 NTQIMYGQGFNREGELID 256


>gi|6694807|gb|AAF25392.1|AF214745_1 RecA protein [Arthrobacter sp. 'SMCC ZAT001']
          Length = 254

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 168/254 (66%), Positives = 210/254 (82%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DA
Sbjct: 1   PIEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD  YA KLGVD   LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEI
Sbjct: 61  EHALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EGDMG+S  G+QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG AL
Sbjct: 121 EGDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+S+R+D+RR+ ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS  G +I
Sbjct: 181 KFYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQGISREGGII 240

Query: 284 DLGVKASIVDKSGA 297
           D+GV+  ++ KSG+
Sbjct: 241 DMGVEHGLIKKSGS 254


>gi|54792170|emb|CAE54401.1| recombination-repair protein [Vibrio harveyi]
 gi|54792463|emb|CAE45611.1| recombination-repair protein [Vibrio campbellii]
 gi|58415391|emb|CAH57110.1| recA protein [Vibrio campbellii]
 gi|58415501|emb|CAH57165.1| recA protein [Vibrio harveyi]
          Length = 256

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 174/258 (67%), Positives = 218/258 (84%), Gaps = 2/258 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEA 238

Query: 267 EFDIMYGEGISFFGELID 284
              IMYG+G +  GELID
Sbjct: 239 NTQIMYGQGFNREGELID 256


>gi|54792449|emb|CAE45604.1| recombination-repair protein [Vibrio aestuarianus]
 gi|58415369|emb|CAH57099.1| recA protein [Vibrio aestuarianus]
          Length = 252

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 173/254 (68%), Positives = 215/254 (84%), Gaps = 2/254 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFG 280
           E  I+YG+G +  G
Sbjct: 239 ETQILYGQGFNREG 252


>gi|54792445|emb|CAE45602.1| recombination-repair protein [Vibrio ordalii]
 gi|54792447|emb|CAE45603.1| recombination-repair protein [Listonella anguillarum]
 gi|58415594|emb|CAH57211.1| recA protein [Vibrio ordalii]
          Length = 256

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 175/258 (67%), Positives = 219/258 (84%), Gaps = 2/258 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQRVGKTCAFIDAEHALDPIYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVIVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELID 284
           +  I+YG+G +  GEL+D
Sbjct: 239 DTQILYGQGFNREGELVD 256


>gi|6694843|gb|AAF25428.1|AF214781_1 RecA protein [Arthrobacter citreus]
          Length = 263

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 172/260 (66%), Positives = 211/260 (81%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +S+ S+ LD+ALGIGG P+GR+VEIYGPESSGKTTLALH +A +QK GG  AF+DAEH
Sbjct: 4   ETISTSSIALDLALGIGGVPRGRVVEIYGPESSGKTTLALHVVANAQKNGGIAAFIDAEH 63

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YA +LGVD  +LL+SQPDTGEQALEI DML+ SG+VD++VIDSVAAL PRAEIEG
Sbjct: 64  ALDPVYAARLGVDTDSLLVSQPDTGEQALEIMDMLIGSGSVDVVVIDSVAALVPRAEIEG 123

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           DM +S  G+QARLMSQALRK+   +S +    +FINQ+R KIGVMFGSPETTTGG ALKF
Sbjct: 124 DMVDSHVGLQARLMSQALRKIAGRLSHTNTTAIFINQLREKIGVMFGSPETTTGGKALKF 183

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           Y+SVR+D+RR+ ++K+     GN+TR K+VKNKMA PFKQ EFDI+YG GIS  G LID+
Sbjct: 184 YASVRIDVRRIETLKEGTVPVGNRTRAKIVKNKMAPPFKQAEFDIIYGTGISREGGLIDM 243

Query: 286 GVKASIVDKSGAWFSFKGQR 305
           GV+   V KSG WF++ G +
Sbjct: 244 GVEHGFVKKSGVWFTYDGDQ 263


>gi|58415363|emb|CAH57096.1| recA protein [Photobacterium phosphoreum]
          Length = 260

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 178/262 (67%), Positives = 221/262 (84%), Gaps = 2/262 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA 
Sbjct: 1   SIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD++V
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVIGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIV 292
           +YG+G +  GELIDLGVK  +V
Sbjct: 239 LYGKGFNREGELIDLGVKHKLV 260


>gi|289524806|emb|CBJ94459.1| recA protein [Vibrio sp. Cmf 6.5]
          Length = 252

 Score =  269 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 180/252 (71%), Positives = 218/252 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +QK G TCAF+DAEHALD
Sbjct: 1   STGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIEG+MG
Sbjct: 61  PIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+S
Sbjct: 121 DSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           VRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK
Sbjct: 181 VRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVK 240

Query: 289 ASIVDKSGAWFS 300
             +V+K+GAW+S
Sbjct: 241 NKLVEKAGAWYS 252


>gi|304564619|gb|ADM45173.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 260

 Score =  269 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 175/259 (67%), Positives = 221/259 (85%), Gaps = 2/259 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH 
Sbjct: 1   GKGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHM 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVD
Sbjct: 59  IAEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           IIVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+
Sbjct: 119 IIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKV 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ E
Sbjct: 179 GVMFGNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAE 238

Query: 268 FDIMYGEGISFFGELIDLG 286
           FDIMYGEGIS  G ++D+G
Sbjct: 239 FDIMYGEGISREGSILDIG 257


>gi|304564719|gb|ADM45223.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 261

 Score =  269 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 175/263 (66%), Positives = 221/263 (84%), Gaps = 2/263 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH I
Sbjct: 1   KGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDI
Sbjct: 59  AEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDI 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+G
Sbjct: 119 IVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EF
Sbjct: 179 VMFGNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEF 238

Query: 269 DIMYGEGISFFGELIDLGVKASI 291
           DIMYGEGIS  G ++D+G    I
Sbjct: 239 DIMYGEGISREGSILDIGASIDI 261


>gi|6694848|gb|AAF25433.1|AF214786_1 RecA protein [Arthrobacter pascens]
          Length = 253

 Score =  269 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 168/253 (66%), Positives = 210/253 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAE
Sbjct: 1   IEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA KLGVD   LL+SQPDTGEQALEI DML+ SG++D+IVIDSVAAL PRAEIE
Sbjct: 61  HALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLIGSGSLDVIVIDSVAALVPRAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG+S  G+QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALK
Sbjct: 121 GDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALK 180

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+S+R+D+RR+ ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS  G +ID
Sbjct: 181 FYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQGISREGGIID 240

Query: 285 LGVKASIVDKSGA 297
           +GV+  I+ KSG+
Sbjct: 241 MGVEHGIIKKSGS 253


>gi|54792501|emb|CAE45630.1| recombination-repair protein [Vibrio furnissii]
          Length = 256

 Score =  269 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 174/258 (67%), Positives = 217/258 (84%), Gaps = 2/258 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            I+ +Q+ G TCAF+DAEHALD +YAR+LGV +  LL+SQPDTGEQALEI D L RSGAV
Sbjct: 59  LISAAQREGKTCAFIDAEHALDPVYARRLGVKIDELLVSQPDTGEQALEICDALARSGAV 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFK+ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKEA 238

Query: 267 EFDIMYGEGISFFGELID 284
              IMYG+G +  GELI+
Sbjct: 239 NTQIMYGQGFNREGELIE 256


>gi|54792152|emb|CAE54392.1| recombination-repair protein [Photobacterium phosphoreum]
 gi|58415361|emb|CAH57095.1| recA protein [Photobacterium phosphoreum]
          Length = 255

 Score =  268 bits (685), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 179/257 (69%), Positives = 218/257 (84%), Gaps = 2/257 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMKLGDNKTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            I+ +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGAV
Sbjct: 59  VISAAQKQGKTCAFIDAEHALDPIYAQKLGVDINELLVSQPDTGEQALEIVDALARSGAV 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGELI 283
           E  I+YG+G +  GELI
Sbjct: 239 ETQILYGQGFNRNGELI 255


>gi|290795121|gb|ADD64576.1| RecA recombinase [Vibrio ordalii]
          Length = 257

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 177/259 (68%), Positives = 220/259 (84%), Gaps = 2/259 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSGA+D
Sbjct: 59  IAAAQRVGKTCAFIDAEHALDPIYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAID 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VIVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ +
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAD 238

Query: 268 FDIMYGEGISFFGELIDLG 286
             I+YG+G +  GEL+DLG
Sbjct: 239 TQILYGQGFNREGELVDLG 257


>gi|223470136|gb|ACM90395.1| recombinase A [Streptococcus salivarius]
 gi|223470152|gb|ACM90403.1| recombinase A [Streptococcus salivarius]
          Length = 275

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 169/277 (61%), Positives = 219/277 (79%), Gaps = 6/277 (2%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           GA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +A
Sbjct: 1   GAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           Q+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++
Sbjct: 59  QTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLV 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+G+
Sbjct: 119 VVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGI 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQ 265
           MFG+PETT GG ALKFY+SVRLD+R    IK     KD   G +T++KVVKNK+A PFK+
Sbjct: 179 MFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDKKDQNVGKETKIKVVKNKVAPPFKE 238

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
              +IMYGEGIS  GEL+ +     I+ K+GAWFS+ 
Sbjct: 239 AFVEIMYGEGISQTGELVKIASDLGIIQKAGAWFSYN 275


>gi|54792184|emb|CAE54408.1| recombination-repair protein [Vibrio mimicus]
 gi|54792192|emb|CAE54412.1| recombination-repair protein [Vibrio cholerae]
 gi|54792503|emb|CAE45631.1| recombination-repair protein [Vibrio mimicus]
 gi|54792507|emb|CAE45633.1| recombination-repair protein [Vibrio cholerae]
 gi|54792509|emb|CAE45634.1| recombination-repair protein [Vibrio cholerae]
 gi|54792511|emb|CAE45635.1| recombination-repair protein [Vibrio cholerae]
 gi|54792513|emb|CAE45636.1| recombination-repair protein [Vibrio cholerae]
 gi|58415409|emb|CAH57119.1| recA protein [Vibrio cholerae]
 gi|58415411|emb|CAH57120.1| recA protein [Vibrio cholerae]
 gi|58415413|emb|CAH57121.1| recA protein [Vibrio cholerae]
 gi|58415417|emb|CAH57123.1| recA protein [Vibrio cholerae]
 gi|58415419|emb|CAH57124.1| recA protein [Vibrio cholerae]
 gi|58415568|emb|CAH57198.1| recA protein [Vibrio mimicus]
 gi|58415570|emb|CAH57199.1| recA protein [Vibrio mimicus]
          Length = 256

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 173/258 (67%), Positives = 218/258 (84%), Gaps = 2/258 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAV
Sbjct: 59  LIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAV 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEA 238

Query: 267 EFDIMYGEGISFFGELID 284
              IMYG+G +  GELID
Sbjct: 239 NTQIMYGQGFNREGELID 256


>gi|179184919|gb|ACB78164.1| RecA [Aliivibrio finisterrensis]
          Length = 262

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 179/264 (67%), Positives = 221/264 (83%), Gaps = 2/264 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA 
Sbjct: 1   SIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD++V
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+ VVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVIGNETRIXVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIVDK 294
           +YG G +  GELIDLGVK  +VDK
Sbjct: 239 LYGXGFNREGELIDLGVKHKLVDK 262


>gi|223635947|emb|CAQ03775.1| recombination-repair protein [Enterovibrio nigricans]
          Length = 256

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 188/258 (72%), Positives = 224/258 (86%), Gaps = 2/258 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   IE VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  +
Sbjct: 1   KGSIMRLGDDRTM--DIETVSTGSLSLDIALGAGGLPFGRIVEIYGPESSGKTTLTLQVV 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK G TCAF+DAEHALD +YARKLGVD+ NLL+SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AEAQKVGKTCAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIADALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT++I  S  +++FINQ+RMKIG
Sbjct: 119 IVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D + GN TRVKVVKNK+A+PFKQ EF
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEVVGNDTRVKVVKNKIAAPFKQAEF 238

Query: 269 DIMYGEGISFFGELIDLG 286
            IMYGEGI+ +GEL+DLG
Sbjct: 239 QIMYGEGINLYGELVDLG 256


>gi|54792180|emb|CAE54406.1| recombination-repair protein [Vibrio cyclitrophicus]
 gi|58415443|emb|CAH57136.1| recA protein [Vibrio cyclitrophicus]
          Length = 255

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 179/257 (69%), Positives = 218/257 (84%), Gaps = 2/257 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D
Sbjct: 59  IAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAID 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAE 238

Query: 268 FDIMYGEGISFFGELID 284
             I+YG+G +  GELID
Sbjct: 239 TQILYGKGFNREGELID 255


>gi|117675763|emb|CAL69152.1| recombinase A [Subtercola boreus]
          Length = 249

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 164/249 (65%), Positives = 202/249 (81%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DMLV
Sbjct: 1   TLTLHAIANAQRDGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG++D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  ++++   ++FIN
Sbjct: 61  RSGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIFIN 120

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+R KIGV FGSPETT GG ALKFY+S+RLDIRR+ ++K+     GN+TRVKVVKNKMA 
Sbjct: 121 QLREKIGVFFGSPETTAGGKALKFYASIRLDIRRIETLKEGTEAVGNRTRVKVVKNKMAP 180

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321
           PFK+ EFDI+YG GIS  G LID GV+  IV KSGAW+++ G +LGQG+ENS+ FL+EN 
Sbjct: 181 PFKEAEFDIIYGIGISREGSLIDFGVEHEIVRKSGAWYTYDGDQLGQGKENSRRFLKENP 240

Query: 322 EIAENIESL 330
           ++A  IE  
Sbjct: 241 DVALEIEKK 249


>gi|197941163|gb|ACH78295.1| RecA [Aliivibrio finisterrensis]
          Length = 260

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 178/262 (67%), Positives = 221/262 (84%), Gaps = 2/262 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA 
Sbjct: 1   SIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD++V
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVIGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELIDLGVKASIV 292
           +YG+G +  GELIDLGVK  +V
Sbjct: 239 LYGKGFNREGELIDLGVKHKLV 260


>gi|304564549|gb|ADM45138.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 261

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 174/263 (66%), Positives = 221/263 (84%), Gaps = 2/263 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++Q
Sbjct: 1   MRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVID
Sbjct: 59  KMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG
Sbjct: 119 SVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMY
Sbjct: 179 NPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMY 238

Query: 273 GEGISFFGELIDLGVKASIVDKS 295
           GEGIS  G ++D+G    I++KS
Sbjct: 239 GEGISREGSILDIGASIDIIEKS 261


>gi|215271654|emb|CAR57860.1| recombination-repair protein [Vibrio campbellii]
 gi|215271656|emb|CAR57861.1| recombination-repair protein [Vibrio campbellii]
 gi|215271658|emb|CAR57862.1| recombination-repair protein [Vibrio campbellii]
 gi|215271660|emb|CAR57863.1| recombination-repair protein [Vibrio campbellii]
 gi|215271662|emb|CAR57864.1| recombination-repair protein [Vibrio campbellii]
 gi|215271664|emb|CAR57865.1| recombination-repair protein [Vibrio rotiferianus]
 gi|215271666|emb|CAR57866.1| recombination-repair protein [Vibrio rotiferianus]
 gi|215271668|emb|CAR57867.1| recombination-repair protein [Vibrio rotiferianus]
 gi|215271670|emb|CAR57868.1| recombination-repair protein [Vibrio rotiferianus]
 gi|215271672|emb|CAR57869.1| recombination-repair protein [Vibrio rotiferianus]
          Length = 259

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 175/261 (67%), Positives = 219/261 (83%), Gaps = 2/261 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 238

Query: 271 MYGEGISFFGELIDLGVKASI 291
           MYG+G +  GELIDLGVK  +
Sbjct: 239 MYGQGFNREGELIDLGVKHKL 259


>gi|304564709|gb|ADM45218.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564731|gb|ADM45229.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 260

 Score =  267 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 174/262 (66%), Positives = 220/262 (83%), Gaps = 2/262 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH I
Sbjct: 1   KGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDI
Sbjct: 59  AEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDI 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+G
Sbjct: 119 IVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EF
Sbjct: 179 VMFGNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEF 238

Query: 269 DIMYGEGISFFGELIDLGVKAS 290
           DIMYGEGIS  G ++D+G    
Sbjct: 239 DIMYGEGISREGSILDIGASID 260


>gi|222064100|emb|CAR78905.1| recombinase A [Pseudochrobactrum sp. KSS 7.8]
          Length = 247

 Score =  267 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 204/247 (82%), Positives = 230/247 (93%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E V +GSL LDIALG+GG PKGRIVEIYGPESSGKTT+ALHTIA++QK GG CAFVDAEH
Sbjct: 1   ETVPTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTMALHTIAEAQKKGGICAFVDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG
Sbjct: 61  ALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIGVMFGSPETTTGGNALKF
Sbjct: 121 EMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKF 180

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           Y+SVRLDIRR+GSIK++D I GNQTRVKVVKNK+A PFKQVEFDIMYG G+S  GELIDL
Sbjct: 181 YASVRLDIRRIGSIKERDEIVGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELIDL 240

Query: 286 GVKASIV 292
           GVKA IV
Sbjct: 241 GVKAGIV 247


>gi|54792194|emb|CAE54413.1| recombination-repair protein [Vibrio cholerae]
 gi|58415415|emb|CAH57122.1| recA protein [Vibrio cholerae]
          Length = 255

 Score =  267 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 172/257 (66%), Positives = 217/257 (84%), Gaps = 2/257 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAV
Sbjct: 59  LIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAV 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEA 238

Query: 267 EFDIMYGEGISFFGELI 283
              IMYG+G +  GELI
Sbjct: 239 NTQIMYGQGFNREGELI 255


>gi|54792160|emb|CAE54396.1| recombination-repair protein [Vibrio rumoiensis]
 gi|58415636|emb|CAH57232.1| recA protein [Vibrio rumoiensis]
          Length = 254

 Score =  267 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 175/256 (68%), Positives = 218/256 (85%), Gaps = 2/256 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMKLGDNRTM--DVETISTGSLALDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD IYA+KLGV++ +LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQRVGKTCAFIDAEHALDPIYAQKLGVNINDLLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFGSPETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGSPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFFGEL 282
           E  I+YG+G +  GEL
Sbjct: 239 ETQILYGKGFNREGEL 254


>gi|304564489|gb|ADM45108.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 260

 Score =  267 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 174/262 (66%), Positives = 220/262 (83%), Gaps = 2/262 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA
Sbjct: 1   GSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           ++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDII
Sbjct: 59  EAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDII 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GV
Sbjct: 119 VIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFD
Sbjct: 179 MFGNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFD 238

Query: 270 IMYGEGISFFGELIDLGVKASI 291
           IMYGEGIS  G ++D+G    I
Sbjct: 239 IMYGEGISREGSILDIGASIDI 260


>gi|50881446|gb|AAT85291.1| DNA repair protein recA, putative [Oryza sativa Japonica Group]
          Length = 395

 Score =  267 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 150/331 (45%), Positives = 205/331 (61%), Gaps = 46/331 (13%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
             MN     KAL+AA++ I   +GKG++ +LGS G  F  +E   SG L LD ALG GG 
Sbjct: 81  TNMNNNVMQKALDAAMNDINSSFGKGSVTRLGSAGGAF--VETFPSGCLTLDFALG-GGL 137

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           PKGR+VE+YGPESSGKTTLALH IA+ QK GG    VDAEHA D  Y++ LGVD++NL+ 
Sbjct: 138 PKGRVVEVYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDIENLI- 196

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
                                                   G++G    G+QARLMSQALR
Sbjct: 197 ----------------------------------------GEIGMQQMGLQARLMSQALR 216

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK--DK 242
           K++ + S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++SVRL+IR +G IK    
Sbjct: 217 KMSGNASKAGCTLMFLNQIRYKIGVFYGNPEVTSGGIALKFFASVRLEIRPIGKIKSAKG 276

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           D   G + RV+V K+K++ P+KQ EF+I++GEG+S  G ++D      +V K G+W+S+K
Sbjct: 277 DEDVGVKVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCVLDCAELMEVVAKKGSWYSYK 336

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
             RLGQGRE +  +LRE+  I + IE  +R 
Sbjct: 337 EMRLGQGREKALQYLRESPTICDEIEKAVRA 367


>gi|241896712|emb|CAZ65707.1| recombinase A [Vibrio hippocampi]
          Length = 259

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 176/261 (67%), Positives = 219/261 (83%), Gaps = 2/261 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 238

Query: 271 MYGEGISFFGELIDLGVKASI 291
           MYG+G +  GELIDLGVK  +
Sbjct: 239 MYGQGFNREGELIDLGVKHKL 259


>gi|223635925|emb|CAQ03764.1| recombination-repair protein [Enterovibrio coralii]
 gi|223635927|emb|CAQ03765.1| recombination-repair protein [Enterovibrio coralii]
 gi|223635929|emb|CAQ03766.1| recombination-repair protein [Enterovibrio coralii]
 gi|223635931|emb|CAQ03767.1| recombination-repair protein [Enterovibrio coralii]
 gi|223635933|emb|CAQ03768.1| recombination-repair protein [Enterovibrio coralii]
 gi|223635935|emb|CAQ03769.1| recombination-repair protein [Enterovibrio coralii]
 gi|223635937|emb|CAQ03770.1| recombination-repair protein [Enterovibrio coralii]
 gi|223635939|emb|CAQ03771.1| recombination-repair protein [Enterovibrio coralii]
 gi|223635941|emb|CAQ03772.1| recombination-repair protein [Enterovibrio coralii]
          Length = 256

 Score =  266 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 188/258 (72%), Positives = 223/258 (86%), Gaps = 2/258 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   IE VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRLGDDRTM--DIETVSTGSLSLDIALGAGGLPYGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK G TCAF+DAEHALD +YARKL VD+ NLL+SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AEAQKQGKTCAFIDAEHALDPVYARKLHVDIDNLLVSQPDTGEQALEIADALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I+IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT++I  S  +++FINQ+RMKIG
Sbjct: 119 IIIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D + GN TRVKVVKNK+A+PFKQ EF
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEVVGNDTRVKVVKNKIAAPFKQAEF 238

Query: 269 DIMYGEGISFFGELIDLG 286
            IMYGEGI+ +GELIDLG
Sbjct: 239 QIMYGEGINLYGELIDLG 256


>gi|304564533|gb|ADM45130.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564535|gb|ADM45131.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 261

 Score =  266 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 174/263 (66%), Positives = 221/263 (84%), Gaps = 2/263 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK
Sbjct: 1   RLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQK 58

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDS
Sbjct: 59  MGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDS 118

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           VAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+
Sbjct: 119 VAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGN 178

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYG
Sbjct: 179 PETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYG 238

Query: 274 EGISFFGELIDLGVKASIVDKSG 296
           EGIS  G ++D+G    I++KSG
Sbjct: 239 EGISREGSILDIGASIDIIEKSG 261


>gi|157783872|gb|ABV72701.1| recombinant DNA repair protein [Vibrio mangrovi]
 gi|163962989|gb|ABY50537.1| recombinant DNA repair protein [Vibrio sp. MSSRF39]
          Length = 258

 Score =  266 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 174/260 (66%), Positives = 217/260 (83%), Gaps = 2/260 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG   ++   +E + +GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q
Sbjct: 1   MRLGDNRAM--DVETIPTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAAAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           + G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+D
Sbjct: 59  REGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVD 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG
Sbjct: 119 SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFK+    IMY
Sbjct: 179 NPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMY 238

Query: 273 GEGISFFGELIDLGVKASIV 292
           G+G +  GEL+DLGVK  +V
Sbjct: 239 GQGFNREGELVDLGVKHKLV 258


>gi|291002568|gb|ADD71489.1| RecA recombinase [Vibrio crassostreae]
          Length = 251

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 174/253 (68%), Positives = 214/253 (84%), Gaps = 2/253 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQA 238

Query: 267 EFDIMYGEGISFF 279
           E  I+YG+G +  
Sbjct: 239 ETXILYGKGFNRE 251


>gi|54792196|emb|CAE54414.1| recombination-repair protein [Grimontia hollisae]
          Length = 255

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 187/257 (72%), Positives = 222/257 (86%), Gaps = 2/257 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   IE VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDDRTM--DIETVSTGSLSLDIALGAGGLPYGRIVEIYGPESSGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA++QK G TCAF+DAEHALD IYARKL VD+ NLL+SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAEAQKQGKTCAFIDAEHALDPIYARKLNVDIDNLLVSQPDTGEQALEIADALTRSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +I+IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT++I  S  +++FINQ+RMKI
Sbjct: 119 VIIIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D + GN TRVKVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEVVGNDTRVKVVKNKIAAPFKQAE 238

Query: 268 FDIMYGEGISFFGELID 284
           F I+YGEGI+ +GELID
Sbjct: 239 FQILYGEGINLYGELID 255


>gi|110264789|gb|ABG56970.1| recA protein [Photobacterium leiognathi]
 gi|110264791|gb|ABG56971.1| recA protein [Photobacterium leiognathi]
 gi|110264793|gb|ABG56972.1| recA protein [Photobacterium leiognathi]
 gi|110264799|gb|ABG56975.1| recA protein [Photobacterium leiognathi]
 gi|110264801|gb|ABG56976.1| recA protein [Photobacterium leiognathi]
 gi|110264805|gb|ABG56978.1| recA protein [Photobacterium leiognathi subsp. mandapamensis]
 gi|156067099|gb|ABR12769.2| recombinase A [Photobacterium leiognathi]
 gi|159146604|gb|ABW90746.1| recombinase A [Photobacterium leiognathi subsp. mandapamensis]
          Length = 255

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 178/257 (69%), Positives = 219/257 (85%), Gaps = 2/257 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L TI
Sbjct: 1   KGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLETI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQRKGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEICDALARSGAVDL 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG
Sbjct: 119 IVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ + 
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKQADT 238

Query: 269 DIMYGEGISFFGELIDL 285
            I+YG+G +  GEL+DL
Sbjct: 239 QILYGQGFNRNGELVDL 255


>gi|289806435|ref|ZP_06537064.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 256

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 169/248 (68%), Positives = 210/248 (84%), Gaps = 2/248 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T
Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243

Query: 251 RVKVVKNK 258
           RVKVVK +
Sbjct: 244 RVKVVKKQ 251


>gi|223635943|emb|CAQ03773.1| recombination-repair protein [Enterovibrio nigricans]
 gi|223635945|emb|CAQ03774.1| recombination-repair protein [Enterovibrio nigricans]
          Length = 256

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 185/258 (71%), Positives = 221/258 (85%), Gaps = 2/258 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   IE VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  +
Sbjct: 1   KGSIMRLGDDRTM--DIETVSTGSLSLDIALGAGGLPFGRIVEIYGPESSGKTTLTLQVV 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK G TCAF+DAEHALD +YARKLGVD+ NLL+SQPDTGEQALEI D L RS AVD+
Sbjct: 59  AEAQKVGKTCAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIADALTRSSAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT++I  S  +++FINQ+RMKIG
Sbjct: 119 IVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PE  TGGNALKFY+SVRLDIRR+GSIK+ D + GN TRVKVVKNK+A+PFKQ EF
Sbjct: 179 VMFGNPENQTGGNALKFYASVRLDIRRIGSIKEGDEVVGNDTRVKVVKNKIAAPFKQAEF 238

Query: 269 DIMYGEGISFFGELIDLG 286
            IMYGEGI+ +GEL+DLG
Sbjct: 239 QIMYGEGINLYGELVDLG 256


>gi|304564401|gb|ADM45064.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 259

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 174/261 (66%), Positives = 219/261 (83%), Gaps = 2/261 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA
Sbjct: 1   GSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           ++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDII
Sbjct: 59  EAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDII 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GV
Sbjct: 119 VIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETT GG ALKFY+++RLD+R+V +IK  + I G++TRVKVVKNK+A PFKQ EFD
Sbjct: 179 MFGNPETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFD 238

Query: 270 IMYGEGISFFGELIDLGVKAS 290
           IMYGEGIS  G ++D+G    
Sbjct: 239 IMYGEGISREGSILDIGASID 259


>gi|304564673|gb|ADM45200.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 259

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 173/261 (66%), Positives = 219/261 (83%), Gaps = 2/261 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA
Sbjct: 1   GSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           ++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDII
Sbjct: 59  EAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDII 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GV
Sbjct: 119 VIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFD
Sbjct: 179 MFGNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFD 238

Query: 270 IMYGEGISFFGELIDLGVKAS 290
           IMYGEGIS  G ++D+G    
Sbjct: 239 IMYGEGISREGSILDIGASID 259


>gi|304564507|gb|ADM45117.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 259

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 173/261 (66%), Positives = 219/261 (83%), Gaps = 2/261 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA+
Sbjct: 1   SIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAE 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIV
Sbjct: 59  AQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVM
Sbjct: 119 IDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDI
Sbjct: 179 FGNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDI 238

Query: 271 MYGEGISFFGELIDLGVKASI 291
           MYGEGIS  G ++D+G    I
Sbjct: 239 MYGEGISREGSILDIGASIDI 259


>gi|290795125|gb|ADD64578.1| RecA recombinase [Vibrio ordalii]
          Length = 254

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 174/256 (67%), Positives = 217/256 (84%), Gaps = 2/256 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSGA+D
Sbjct: 59  IAAAQRVGKTCAFIDAEHALDPIYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAID 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VIVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ +
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAD 238

Query: 268 FDIMYGEGISFFGELI 283
             I+YG+G +  GEL+
Sbjct: 239 TQILYGQGFNREGELV 254


>gi|304564437|gb|ADM45082.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 259

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 174/261 (66%), Positives = 219/261 (83%), Gaps = 2/261 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA+
Sbjct: 1   SIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAE 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIV
Sbjct: 59  AQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVM
Sbjct: 119 IDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETT GG ALKFY+++RLD+R+V +IK  + I G++TRVKVVKNK+A PFKQ EFDI
Sbjct: 179 FGNPETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDI 238

Query: 271 MYGEGISFFGELIDLGVKASI 291
           MYGEGIS  G ++D+G    I
Sbjct: 239 MYGEGISREGSILDIGASIDI 259


>gi|47571286|gb|AAT35800.1| RecA [Mycobacterium nonchromogenicum]
          Length = 243

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 157/241 (65%), Positives = 198/241 (82%), Gaps = 2/241 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KALE A++QI + +GKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR+
Sbjct: 5   PDREKALELAMAQIDKNFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YARKLGVD  +LL+SQPDT
Sbjct: 63  VEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYARKLGVDTDSLLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D L+RSGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +
Sbjct: 123 GEQALEIADTLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           ++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+
Sbjct: 183 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIEALKDGTDAVGNR 242

Query: 250 T 250
           T
Sbjct: 243 T 243


>gi|157326969|gb|ABV44597.1| RecA [Burkholderia vietnamiensis]
          Length = 245

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 174/244 (71%), Positives = 216/244 (88%)

Query: 96  GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
           GT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVA
Sbjct: 1   GTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVA 60

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
           AL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PE
Sbjct: 61  ALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPE 120

Query: 216 TTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275
           TTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEG
Sbjct: 121 TTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEG 180

Query: 276 ISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
           IS  GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ +R++ 
Sbjct: 181 ISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIRESL 240

Query: 336 GLVA 339
           G+VA
Sbjct: 241 GVVA 244


>gi|54792182|emb|CAE54407.1| recombination-repair protein [Vibrio fluvialis]
 gi|58415469|emb|CAH57149.1| recA protein [Vibrio fluvialis]
          Length = 253

 Score =  264 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 173/255 (67%), Positives = 214/255 (83%), Gaps = 2/255 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           I+ +Q+ G TCAF+DAEHALD +YAR+LGV +  LL+SQPDTGEQALEI D L RSGAVD
Sbjct: 59  ISAAQREGKTCAFIDAEHALDPVYARRLGVKIDELLVSQPDTGEQALEICDALARSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFK+  
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKEAN 238

Query: 268 FDIMYGEGISFFGEL 282
             IMYG+G +  GEL
Sbjct: 239 TQIMYGQGFNREGEL 253


>gi|304564459|gb|ADM45093.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 259

 Score =  264 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 173/261 (66%), Positives = 219/261 (83%), Gaps = 2/261 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++
Sbjct: 1   IMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVI
Sbjct: 59  QKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVI 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMF
Sbjct: 119 DSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIM
Sbjct: 179 GNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIM 238

Query: 272 YGEGISFFGELIDLGVKASIV 292
           YGEGIS  G ++D+G    I+
Sbjct: 239 YGEGISREGSILDIGASIDII 259


>gi|89143251|emb|CAJ57520.1| recombinase A [Microbacterium keratanolyticum]
          Length = 246

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 168/245 (68%), Positives = 204/245 (83%)

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL++QPDTGEQ
Sbjct: 1   YGPESSGKTTLTLHAIANAQRNGGIAAFIDAEHALDPEYAKKLGVDIDALLVAQPDTGEQ 60

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEI DMLVRSG++D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  +++
Sbjct: 61  ALEIADMLVRSGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQ 120

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           +   ++FINQ+R KIGV FGSPETT GG ALKFY+SVR+DIRR+ ++KD     GN+TRV
Sbjct: 121 TNTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRMDIRRIETLKDGTEAVGNRTRV 180

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312
           KVVKNKMA PFKQ EFDI+YG GIS  G LID GV+ +IV KSGAW+++ G +LGQG+EN
Sbjct: 181 KVVKNKMAPPFKQAEFDIIYGVGISREGSLIDFGVEHAIVKKSGAWYTYDGDQLGQGKEN 240

Query: 313 SKIFL 317
           ++ FL
Sbjct: 241 ARNFL 245


>gi|304564417|gb|ADM45072.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 260

 Score =  264 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 174/262 (66%), Positives = 220/262 (83%), Gaps = 2/262 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK
Sbjct: 1   RLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQK 58

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDS
Sbjct: 59  MGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDS 118

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           VAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+
Sbjct: 119 VAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGN 178

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PETT GG ALKFY+++RLD+R+V +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYG
Sbjct: 179 PETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYG 238

Query: 274 EGISFFGELIDLGVKASIVDKS 295
           EGIS  G ++D+G    I++KS
Sbjct: 239 EGISREGSILDIGASIDIIEKS 260


>gi|290795127|gb|ADD64579.1| RecA recombinase [Vibrio ordalii]
          Length = 253

 Score =  264 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 174/255 (68%), Positives = 216/255 (84%), Gaps = 2/255 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSGA+D
Sbjct: 59  IAAAQRVGKTCAFIDAEHALDPIYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAID 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VIVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ +
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAD 238

Query: 268 FDIMYGEGISFFGEL 282
             I+YG+G +  GEL
Sbjct: 239 TQILYGQGFNREGEL 253


>gi|161788608|emb|CAP18004.2| DNA recombinase [Burkholderia contaminans]
          Length = 285

 Score =  264 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 173/256 (67%), Positives = 218/256 (85%), Gaps = 5/256 (1%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P
Sbjct: 35  FIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVP 94

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           +AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTG
Sbjct: 95  KAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTG 154

Query: 220 GNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFF 279
           GNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  
Sbjct: 155 GNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQ 214

Query: 280 GELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE+ +R++ G+V 
Sbjct: 215 GEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIRESLGVVT 274

Query: 340 DSLLQEPAINTKDDAD 355
                 P    +D+A+
Sbjct: 275 -----MPDGAGQDEAE 285


>gi|304415656|gb|ADM30934.1| recombinant DNA repair protein [Vibrio areninigrae]
          Length = 251

 Score =  263 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 176/251 (70%), Positives = 215/251 (85%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHA
Sbjct: 1   TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQRAGKTCAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YA+KLGV + +LL+SQPDTGEQALEI D L RSGAVD++V+DSVAALTP+AEIEG+
Sbjct: 61  LDPVYAKKLGVQIDDLLVSQPDTGEQALEICDALARSGAVDVMVVDSVAALTPKAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY
Sbjct: 121 MGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFY 180

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
           +SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E  I+YG G +  GELIDLG
Sbjct: 181 ASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQILYGAGFNREGELIDLG 240

Query: 287 VKASIVDKSGA 297
           VK  +V+K+GA
Sbjct: 241 VKHKLVEKAGA 251


>gi|195941868|ref|ZP_03087250.1| recombinase A [Borrelia burgdorferi 80a]
 gi|195942406|ref|ZP_03087788.1| recombinase A [Borrelia burgdorferi 80a]
          Length = 307

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 164/294 (55%), Positives = 231/294 (78%), Gaps = 4/294 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           +    K +A+E A  QI++ +GKG+++++G    + +GI+ +SSGS+ LD ALGIGG+P+
Sbjct: 15  IERASKEEAIELARVQIEKAFGKGSLIKMGE-SPVGQGIKSMSSGSIVLDEALGIGGYPR 73

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+ LGV++  L +SQ
Sbjct: 74  GRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQ 133

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI + L+RSG VD+IV+DSVAALTP+ EI+G+MG+S  G+QARLMS+ALRK+
Sbjct: 134 PDTGEQALEIAEHLIRSGGVDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKI 193

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKD 243
           T  +S+S   ++FINQ+RM+IGVMFG+PETTTGGNALKFYSS+RL++R++  +      D
Sbjct: 194 TGILSKSNTCIMFINQIRMRIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTRSGSSD 253

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
            + GN+ RVK+VKNK+A PF++VE  I +G+GIS    ++D  +K +++ K+G+
Sbjct: 254 DVIGNKIRVKIVKNKVAPPFRKVELIIYFGKGISREAGILDAAIKHNLIQKTGS 307


>gi|304564483|gb|ADM45105.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564517|gb|ADM45122.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 258

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 173/260 (66%), Positives = 218/260 (83%), Gaps = 2/260 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++
Sbjct: 1   IMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVI
Sbjct: 59  QKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVI 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMF
Sbjct: 119 DSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIM
Sbjct: 179 GNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIM 238

Query: 272 YGEGISFFGELIDLGVKASI 291
           YGEGIS  G ++D+G    I
Sbjct: 239 YGEGISREGSILDIGASIDI 258


>gi|215271652|emb|CAR57859.1| recombination-repair protein [Vibrio campbellii]
          Length = 257

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 174/259 (67%), Positives = 216/259 (83%), Gaps = 2/259 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q
Sbjct: 1   MRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           + G TCAF+DAEHALD +YA KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+D
Sbjct: 59  REGKTCAFIDAEHALDPVYAMKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVD 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG
Sbjct: 119 SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IMY
Sbjct: 179 NPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMY 238

Query: 273 GEGISFFGELIDLGVKASI 291
           G+G +  GELIDLGVK  +
Sbjct: 239 GQGFNREGELIDLGVKHKL 257


>gi|52630819|gb|AAU84877.1| RecA [Burkholderia sp. R15821]
          Length = 247

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 196/247 (79%), Positives = 222/247 (89%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGTCAF+DA
Sbjct: 1   DIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKIGGTCAFIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD  YA KLGV+L +LLISQPDTGEQALEITD LVRSG+VD+IVIDSVAAL PRAEI
Sbjct: 61  EHALDVQYASKLGVNLADLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EGDMG+SLPG+QARLMSQALRKLT+SI R+ C+++FINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 121 EGDMGDSLPGLQARLMSQALRKLTASIKRTNCMVIFINQIRMKIGVMFGSPETTTGGNAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A PFKQ EFDIMYG GIS  GE+I
Sbjct: 181 KFYASVRLDIRRIGSIKKGDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGAGISREGEMI 240

Query: 284 DLGVKAS 290
           DLGV+A 
Sbjct: 241 DLGVQAG 247


>gi|6694824|gb|AAF25409.1|AF214762_1 RecA protein [Arthrobacter sp. 'SMCC G961']
          Length = 255

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 165/250 (66%), Positives = 206/250 (82%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DA
Sbjct: 2   PIEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD  YA KLGVD   LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEI
Sbjct: 62  EHALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEI 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EGDMG+S  G+QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG AL
Sbjct: 122 EGDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKAL 181

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+S+R+D+RR+ ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS  G +I
Sbjct: 182 KFYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQGISREGGII 241

Query: 284 DLGVKASIVD 293
           D+GV+  ++ 
Sbjct: 242 DMGVEHGLIR 251


>gi|291002570|gb|ADD71490.1| RecA recombinase [Vibrio crassostreae]
          Length = 250

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 174/252 (69%), Positives = 213/252 (84%), Gaps = 2/252 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D
Sbjct: 59  IAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAID 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAE 238

Query: 268 FDIMYGEGISFF 279
             I+YG+G +  
Sbjct: 239 TXILYGKGFNRE 250


>gi|52630791|gb|AAU84863.1| RecA [Burkholderia fungorum]
          Length = 255

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 189/254 (74%), Positives = 224/254 (88%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
             E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGT AF
Sbjct: 1   AVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAF 60

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           +DAEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+
Sbjct: 61  IDAEHALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPK 120

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
           AEIEG+MGESLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGG
Sbjct: 121 AEIEGEMGESLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGG 180

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           NALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A PF++  FDI+YGEGIS  G
Sbjct: 181 NALKFYTSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPPFREAIFDILYGEGISRQG 240

Query: 281 ELIDLGVKASIVDK 294
           E+IDLGV+A IVDK
Sbjct: 241 EIIDLGVQAKIVDK 254


>gi|179184889|gb|ACB78163.1| RecA [Vibrio breoganii]
          Length = 251

 Score =  262 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 172/253 (67%), Positives = 214/253 (84%), Gaps = 2/253 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPIYAQKLGVNIDALLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELI 283
           MYG+G +  GELI
Sbjct: 239 MYGQGFNREGELI 251


>gi|52630795|gb|AAU84865.1| RecA [Burkholderia glathei]
          Length = 254

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 189/254 (74%), Positives = 225/254 (88%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF
Sbjct: 1   VVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKIGGTAAF 60

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           +DAEHALD  YA+KLGV+  +LLISQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+
Sbjct: 61  IDAEHALDVQYAQKLGVNASDLLISQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPK 120

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
           AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGG
Sbjct: 121 AEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGG 180

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           NALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  G
Sbjct: 181 NALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQG 240

Query: 281 ELIDLGVKASIVDK 294
           E+IDLGV+A IVDK
Sbjct: 241 EIIDLGVQAKIVDK 254


>gi|195927672|gb|ACG55501.1| RecA [Vibrio halioticoli]
          Length = 251

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 173/253 (68%), Positives = 215/253 (84%), Gaps = 2/253 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLALDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGV++ +LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPIYAQKLGVNIDSLLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IKD D I GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEIVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELI 283
           MYG+G +  GELI
Sbjct: 239 MYGQGFNREGELI 251


>gi|223635951|emb|CAQ03777.1| recombination-repair protein [Grimontia hollisae]
          Length = 254

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 186/256 (72%), Positives = 221/256 (86%), Gaps = 2/256 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   IE VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA+
Sbjct: 1   SIMRLGDDRTM--DIETVSTGSLSLDIALGAGGLPYGRIVEIYGPESSGKTTLTLQVIAE 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD IYARKL VD+ NLL+SQPDTGEQALEI D L RSGAVD+I+
Sbjct: 59  AQKQGKTCAFIDAEHALDPIYARKLNVDIDNLLVSQPDTGEQALEIADALTRSGAVDVII 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT++I  S  +++FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D + GN TRVKVVKNK+A+PFKQ EF I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEVVGNDTRVKVVKNKIAAPFKQAEFQI 238

Query: 271 MYGEGISFFGELIDLG 286
           +YGEGI+ +GELIDLG
Sbjct: 239 LYGEGINLYGELIDLG 254


>gi|179185349|gb|ACB78179.1| RecA [Vibrio gallicus]
          Length = 251

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 175/253 (69%), Positives = 215/253 (84%), Gaps = 2/253 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LD+ALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNKTM--DVETISTGSLSLDVALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAFVDAEHALD IYA+KLGVD++ LL+SQPDTGEQALEI D L RSGAVD++V
Sbjct: 59  AQREGKTCAFVDAEHALDPIYAQKLGVDIEQLLVSQPDTGEQALEICDALARSGAVDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IKD D I GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEIVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELI 283
           MYG+G +  GELI
Sbjct: 239 MYGKGFNREGELI 251


>gi|304564613|gb|ADM45170.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564643|gb|ADM45185.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564645|gb|ADM45186.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564647|gb|ADM45187.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564707|gb|ADM45217.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564711|gb|ADM45219.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 257

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 172/259 (66%), Positives = 217/259 (83%), Gaps = 2/259 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++
Sbjct: 1   IMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVI
Sbjct: 59  QKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVI 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMF
Sbjct: 119 DSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIM
Sbjct: 179 GNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIM 238

Query: 272 YGEGISFFGELIDLGVKAS 290
           YGEGIS  G ++D+G    
Sbjct: 239 YGEGISREGSILDIGASID 257


>gi|304564407|gb|ADM45067.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 257

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 173/259 (66%), Positives = 217/259 (83%), Gaps = 2/259 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++
Sbjct: 1   IMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVI
Sbjct: 59  QKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVI 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMF
Sbjct: 119 DSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETT GG ALKFY+++RLD+R+V +IK  + I G++TRVKVVKNK+A PFKQ EFDIM
Sbjct: 179 GNPETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIM 238

Query: 272 YGEGISFFGELIDLGVKAS 290
           YGEGIS  G ++D+G    
Sbjct: 239 YGEGISREGSILDIGASID 257


>gi|304564485|gb|ADM45106.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564487|gb|ADM45107.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564513|gb|ADM45120.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564515|gb|ADM45121.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564519|gb|ADM45123.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 257

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 172/259 (66%), Positives = 217/259 (83%), Gaps = 2/259 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++Q
Sbjct: 1   MRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVID
Sbjct: 59  KMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG
Sbjct: 119 SVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMY
Sbjct: 179 NPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMY 238

Query: 273 GEGISFFGELIDLGVKASI 291
           GEGIS  G ++D+G    I
Sbjct: 239 GEGISREGSILDIGASIDI 257


>gi|117675759|emb|CAL69150.1| recombinase A [Agreia bicolorata]
          Length = 243

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 172/243 (70%), Positives = 203/243 (83%)

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTL LH IA +QK GG  AF+DAEHALD  YA+KLGVD+  LL+SQP
Sbjct: 1   RIVEIYGPESSGKTTLTLHAIANAQKAGGIAAFIDAEHALDPAYAQKLGVDIDALLVSQP 60

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI DMLVRSG++D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT
Sbjct: 61  DTGEQALEIADMLVRSGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLT 120

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
             +S +   ++FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++K+     G
Sbjct: 121 GGLSTTNTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKEGTDAVG 180

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+TRVKVVKNKMA PFKQ EFDI+YG GIS  G LID GV+  IV KSGAW++++G++LG
Sbjct: 181 NRTRVKVVKNKMAPPFKQAEFDILYGIGISREGSLIDFGVEHEIVRKSGAWYTYEGEQLG 240

Query: 308 QGR 310
           QG+
Sbjct: 241 QGK 243


>gi|304564603|gb|ADM45165.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564633|gb|ADM45180.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 256

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 172/255 (67%), Positives = 217/255 (85%), Gaps = 2/255 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++
Sbjct: 1   IMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVI
Sbjct: 59  QKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVI 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMF
Sbjct: 119 DSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIM
Sbjct: 179 GNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIM 238

Query: 272 YGEGISFFGELIDLG 286
           YGEGIS  G ++D+G
Sbjct: 239 YGEGISREGSILDIG 253


>gi|52630793|gb|AAU84864.1| RecA [Burkholderia gladioli]
          Length = 252

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 190/252 (75%), Positives = 224/252 (88%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AE
Sbjct: 61  AEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           IEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNA
Sbjct: 121 IEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNA 180

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+
Sbjct: 181 LKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRESIFDILYGEGISRQGEI 240

Query: 283 IDLGVKASIVDK 294
           IDLGV+A IVDK
Sbjct: 241 IDLGVQAKIVDK 252


>gi|306517927|emb|CBL53387.1| recombination-repair protein [Photobacterium rosenbergii]
          Length = 255

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 180/256 (70%), Positives = 218/256 (85%), Gaps = 2/256 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG   ++   +E VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q
Sbjct: 1   MKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAAAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K G TCAF+DAEHALD IYARKLGVD+  LL+SQPDTGEQALEI D L RSGAVDI+V+D
Sbjct: 59  KQGKTCAFIDAEHALDPIYARKLGVDIDQLLVSQPDTGEQALEIADALARSGAVDILVVD 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP+AEIEG+MG+S  G+QAR++SQA+RK+T ++ +S C+ +FINQ+RMKIGVMFG
Sbjct: 119 SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKITGNLKQSNCMCIFINQIRMKIGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ E  I+Y
Sbjct: 179 NPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKQAETQILY 238

Query: 273 GEGISFFGELIDLGVK 288
           G+G + +GELIDLGVK
Sbjct: 239 GKGFNRYGELIDLGVK 254


>gi|179185284|gb|ACB78177.1| RecA [Vibrio rarus]
          Length = 251

 Score =  260 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 172/253 (67%), Positives = 214/253 (84%), Gaps = 2/253 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAS 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPIYAQKLGVNIDALLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELI 283
           MYG+G +  GELI
Sbjct: 239 MYGQGFNREGELI 251


>gi|223470140|gb|ACM90397.1| recombinase A [Streptococcus salivarius]
          Length = 271

 Score =  260 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 166/273 (60%), Positives = 215/273 (78%), Gaps = 6/273 (2%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG +    + ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK
Sbjct: 1   RLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQTQK 58

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG  AF+DAEHALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DS
Sbjct: 59  EGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDS 118

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           VAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+G+MFG+
Sbjct: 119 VAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGN 178

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           PETT GG ALKFY+SVRLD+R    IK     KD   G +T++KVVKNK+A PFK+   +
Sbjct: 179 PETTPGGRALKFYASVRLDVRGNTQIKGTGDKKDQNVGKETKIKVVKNKVAPPFKEAFVE 238

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           IMYGEGIS  GEL+ +     I+ K+GAWFS+ 
Sbjct: 239 IMYGEGISQTGELVKIASDLGIIQKAGAWFSYN 271


>gi|304564523|gb|ADM45125.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 258

 Score =  260 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 172/260 (66%), Positives = 218/260 (83%), Gaps = 2/260 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK 
Sbjct: 1   LGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKM 58

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSV
Sbjct: 59  GGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSV 118

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+P
Sbjct: 119 AALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNP 178

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           ETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGE
Sbjct: 179 ETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGE 238

Query: 275 GISFFGELIDLGVKASIVDK 294
           GIS  G ++D+G    I++K
Sbjct: 239 GISREGSILDIGASIDIIEK 258


>gi|148887241|emb|CAM12787.1| recombinase A [Ochrobactrum pseudogrignonense]
          Length = 251

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 194/234 (82%), Positives = 219/234 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE V +GSL LDIALG+GG PKGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAE
Sbjct: 1   IETVPTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIE
Sbjct: 61  HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+SLPG+QARLMSQALRKLT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALK
Sbjct: 121 GEMGDSLPGLQARLMSQALRKLTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALK 180

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISF 278
           FY+SVRLDIRR+GSIK++D + GNQTRVKVVKNK+A PFKQVEFDIMYG G+  
Sbjct: 181 FYASVRLDIRRIGSIKERDEVVGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVPR 234


>gi|52630789|gb|AAU84862.1| RecA [Burkholderia caryophylli]
          Length = 253

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 187/253 (73%), Positives = 224/253 (88%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF
Sbjct: 1   VAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAF 60

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           +DAEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+
Sbjct: 61  IDAEHALDIQYAAKLGVNVADLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPK 120

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
           AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGG
Sbjct: 121 AEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGG 180

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           NALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  G
Sbjct: 181 NALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQG 240

Query: 281 ELIDLGVKASIVD 293
           E+IDLGV+A IVD
Sbjct: 241 EIIDLGVQAKIVD 253


>gi|6694852|gb|AAF25437.1|AF214790_1 RecA protein [Arthrobacter protophormiae]
          Length = 247

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 172/247 (69%), Positives = 207/247 (83%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           EV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEH
Sbjct: 1   EVIPTGSVALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVASAQRNGGIAAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA+KLGVD   LL+SQPDTGEQALEI DMLV SGA+DIIVIDSVAAL PRAEIEG
Sbjct: 61  ALDPEYAKKLGVDTDALLVSQPDTGEQALEIMDMLVGSGALDIIVIDSVAALVPRAEIEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +MG+S  G+QARLMSQALRK+T  +S SK   +FINQ+R KIGV FGSPETTTGG ALKF
Sbjct: 121 EMGDSHVGLQARLMSQALRKITGRLSASKTTAIFINQLREKIGVFFGSPETTTGGKALKF 180

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           Y+SVR+DIRR+ ++K+  +  GN+TR K+VKNKMA PFKQ EFDI+YG GIS  G LID+
Sbjct: 181 YASVRIDIRRIETLKEGTNPVGNRTRAKIVKNKMAPPFKQAEFDILYGHGISREGSLIDM 240

Query: 286 GVKASIV 292
           GV+ ++V
Sbjct: 241 GVEHNLV 247


>gi|179185020|gb|ACB78167.1| RecA [Vibrio sp. CECT 7223]
          Length = 251

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 175/253 (69%), Positives = 214/253 (84%), Gaps = 2/253 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELI 283
           +YG+G +  GELI
Sbjct: 239 LYGKGFNREGELI 251


>gi|52630771|gb|AAU84853.1| RecA [Burkholderia kururiensis]
          Length = 251

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 189/251 (75%), Positives = 222/251 (88%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   ENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA KLGV++  LLISQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AE
Sbjct: 61  AEHALDVQYASKLGVNVPELLISQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           IEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNA
Sbjct: 121 IEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNA 180

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+
Sbjct: 181 LKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAVFDILYGEGISRQGEI 240

Query: 283 IDLGVKASIVD 293
           IDLGV+A IVD
Sbjct: 241 IDLGVQAKIVD 251


>gi|179184986|gb|ACB78166.1| RecA [Vibrio sp. CECT 7226]
          Length = 251

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 174/253 (68%), Positives = 214/253 (84%), Gaps = 2/253 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQKVGKTCAFIDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELI 283
           +YG+G +  GELI
Sbjct: 239 LYGKGFNREGELI 251


>gi|269784250|emb|CBH50770.1| recA protein [Vibrio sp. Rd 16.13]
          Length = 257

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 177/252 (70%), Positives = 215/252 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +QK G TCAFVDA
Sbjct: 6   DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDA 65

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA+KLGVD+  LL+SQPDTGE ALEI D L RSGA+D++VIDSVAALTP+AEI
Sbjct: 66  EHALDPIYAQKLGVDIDALLVSQPDTGEPALEICDALARSGAIDVLVIDSVAALTPKAEI 125

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 126 EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNAL 185

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GELI
Sbjct: 186 KFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELI 245

Query: 284 DLGVKASIVDKS 295
           DLGVK  +V+K+
Sbjct: 246 DLGVKNKLVEKA 257


>gi|304564543|gb|ADM45135.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564545|gb|ADM45136.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 257

 Score =  259 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 171/259 (66%), Positives = 217/259 (83%), Gaps = 2/259 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK
Sbjct: 1   RLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQK 58

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDS
Sbjct: 59  MGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDS 118

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           VAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+
Sbjct: 119 VAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGN 178

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYG
Sbjct: 179 PETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYG 238

Query: 274 EGISFFGELIDLGVKASIV 292
           EGIS  G ++D+G    I+
Sbjct: 239 EGISREGSILDIGASIDII 257


>gi|190571772|ref|YP_001966451.1| RecAlp [Lactococcus lactis]
 gi|3219859|sp|Q59486|RECA2_LACLA RecName: Full=Protein RecA, plasmid; AltName: Full=Recombinase A;
           AltName: Full=recaLP
 gi|1039478|gb|AAB52384.1| RecA(LP) [Lactococcus lactis]
 gi|108736171|gb|ABG00300.1| RecAlp [Lactococcus lactis]
          Length = 341

 Score =  259 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 136/332 (40%), Positives = 218/332 (65%), Gaps = 5/332 (1%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           RK  +  +K  A+  A   I++ +G   I  L  +G   + ++ + SG L LD A+GIGG
Sbjct: 12  RKLDDPEEKKLAILKATQSIEKKFGSNTI--LNEEGKASQHVQALPSGILSLDCAIGIGG 69

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
           +PKGR++E++G ESSGKTT+AL  +A++QK GG  A++DAE++LD  YA  LGV   +L+
Sbjct: 70  YPKGRLIELFGAESSGKTTVALQAVAETQKNGGYVAYIDAENSLDIEYAENLGVKSDSLI 129

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
            +QPDTGE+A  + +  VR+GA D+IV+DSVAALTP +EI+G     +PG QA++MS+ L
Sbjct: 130 FAQPDTGEEAFYMINEFVRTGAFDLIVVDSVAALTPASEIDGV---KMPGQQAKMMSEQL 186

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
            +L   ++++K +++FINQ+R  +  +F + ETT GG+ALKFYSSVR++++    IKD  
Sbjct: 187 SQLVGKVNQTKTVIIFINQIRSTMSGLFLNKETTPGGSALKFYSSVRIEVKSGEKIKDGI 246

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
              G +T +  VKNK++SP+K+     ++G+G S   +++   ++  +V K G W+SF G
Sbjct: 247 DTIGKKTTLHTVKNKVSSPYKKPTVINIFGDGFSQEIDVVTTALQLGVVKKLGEWYSFNG 306

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
           Q+LG+G    K +L  +  +   +++L R+  
Sbjct: 307 QKLGRGIFGVKEYLSHHPSVFNALDNLTREAL 338


>gi|304564439|gb|ADM45083.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 257

 Score =  259 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 172/259 (66%), Positives = 217/259 (83%), Gaps = 2/259 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK
Sbjct: 1   RLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQK 58

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDS
Sbjct: 59  MGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDS 118

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           VAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+
Sbjct: 119 VAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGN 178

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PETT GG ALKFY+++RLD+R+V +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYG
Sbjct: 179 PETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYG 238

Query: 274 EGISFFGELIDLGVKASIV 292
           EGIS  G ++D+G    I+
Sbjct: 239 EGISREGSILDIGASIDII 257


>gi|148879005|emb|CAM07018.1| RecA protein [Mycobacterium llatzerense]
          Length = 243

 Score =  259 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 156/242 (64%), Positives = 198/242 (81%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD   LL+SQPDTGEQALEI DMLVR
Sbjct: 1   VALHAVANAQAAGGIAAFIDAEHALDPDYAQKLGVDTDALLVSQPDTGEQALEIADMLVR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGA+DI+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +++ S    +FINQ
Sbjct: 61  SGAIDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQ 120

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+TR K+VKNK+A P
Sbjct: 121 LREKIGVMFGSPETTTGGKALKFYASVRIDVRRIETLKDGTDAVGNRTRAKIVKNKVAPP 180

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
           FKQ EFDI+YG+GIS  G LID+GV+   + KSG+WF++ G++LGQG+EN++ +L +N +
Sbjct: 181 FKQAEFDILYGKGISKEGSLIDMGVEHGFIRKSGSWFTYDGEQLGQGKENARNYLLQNPD 240

Query: 323 IA 324
            A
Sbjct: 241 AA 242


>gi|289623240|emb|CAX51157.1| recA protein [Aeromonas salmonicida subsp. pectinolytica]
 gi|289623242|emb|CAX51158.1| recA protein [Aeromonas salmonicida subsp. masoucida]
          Length = 244

 Score =  258 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 181/243 (74%), Positives = 211/243 (86%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L  IA++QK G  CAF+DA
Sbjct: 2   DIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKVCAFIDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEI
Sbjct: 62  EHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEI 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 122 EGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNAL 181

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+SVRLDIRR+G+IK+ D + GN+TRVKVVKNK+A PFKQ EF I YG GIS  GEL+
Sbjct: 182 KFYASVRLDIRRIGAIKEGDEVVGNETRVKVVKNKVAPPFKQAEFQIFYGVGISKEGELV 241

Query: 284 DLG 286
           DLG
Sbjct: 242 DLG 244


>gi|304564503|gb|ADM45115.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564505|gb|ADM45116.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564649|gb|ADM45188.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564651|gb|ADM45189.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564653|gb|ADM45190.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564663|gb|ADM45195.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564665|gb|ADM45196.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564675|gb|ADM45201.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564681|gb|ADM45204.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564733|gb|ADM45230.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564745|gb|ADM45236.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564747|gb|ADM45237.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 256

 Score =  258 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 171/258 (66%), Positives = 216/258 (83%), Gaps = 2/258 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++Q
Sbjct: 1   MRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVID
Sbjct: 59  KMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG
Sbjct: 119 SVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMY
Sbjct: 179 NPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMY 238

Query: 273 GEGISFFGELIDLGVKAS 290
           GEGIS  G ++D+G    
Sbjct: 239 GEGISREGSILDIGASID 256


>gi|304564433|gb|ADM45080.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564435|gb|ADM45081.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 256

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 172/258 (66%), Positives = 216/258 (83%), Gaps = 2/258 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++Q
Sbjct: 1   MRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVID
Sbjct: 59  KMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG
Sbjct: 119 SVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETT GG ALKFY+++RLD+R+V +IK  + I G++TRVKVVKNK+A PFKQ EFDIMY
Sbjct: 179 NPETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMY 238

Query: 273 GEGISFFGELIDLGVKAS 290
           GEGIS  G ++D+G    
Sbjct: 239 GEGISREGSILDIGASID 256


>gi|148887231|emb|CAM12782.1| recombinase A [Ochrobactrum thiophenivorans]
          Length = 259

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 193/230 (83%), Positives = 217/230 (94%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE V +GSL LDIALG+GG PKGRI+EIYGPESSGKTTLALHTIA++QK GG CAFVDA
Sbjct: 4   DIETVPTGSLSLDIALGVGGLPKGRIIEIYGPESSGKTTLALHTIAEAQKKGGICAFVDA 63

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEI
Sbjct: 64  EHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEI 123

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+SLPG+QARLMSQALRKLT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 124 EGEMGDSLPGLQARLMSQALRKLTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNAL 183

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           KFY+SVRLDIRR+GSIK++D + GNQTRVKVVKNK+A PFKQVEFDIMYG
Sbjct: 184 KFYASVRLDIRRIGSIKERDEVVGNQTRVKVVKNKLAPPFKQVEFDIMYG 233


>gi|304564671|gb|ADM45199.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 256

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 170/258 (65%), Positives = 215/258 (83%), Gaps = 2/258 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++Q
Sbjct: 1   MRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGT AF+DAEHALD +YA+ LG ++++LL++QPDTGEQALEI + LVRSGAVDIIVID
Sbjct: 59  KMGGTGAFIDAEHALDPVYAKNLGANIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG
Sbjct: 119 SVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMY
Sbjct: 179 NPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMY 238

Query: 273 GEGISFFGELIDLGVKAS 290
           GEGIS  G ++D+G    
Sbjct: 239 GEGISREGSILDIGASID 256


>gi|304564621|gb|ADM45174.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564623|gb|ADM45175.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564625|gb|ADM45176.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 254

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 171/254 (67%), Positives = 216/254 (85%), Gaps = 2/254 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++Q
Sbjct: 1   MRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVID
Sbjct: 59  KMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG
Sbjct: 119 SVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMY
Sbjct: 179 NPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMY 238

Query: 273 GEGISFFGELIDLG 286
           GEGIS  G ++D+G
Sbjct: 239 GEGISREGSILDIG 252


>gi|148897705|emb|CAM18506.1| recombinase A [Ochrobactrum grignonense]
 gi|148897707|emb|CAM18507.1| recombinase A [Ochrobactrum grignonense]
          Length = 247

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 197/247 (79%), Positives = 223/247 (90%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E V +GSL LDIALG+GG PKGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEH
Sbjct: 1   ETVPTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG
Sbjct: 61  ALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +MG+SLPG+QARLMSQALRKLT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKF
Sbjct: 121 EMGDSLPGLQARLMSQALRKLTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKF 180

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           Y+SVRLDIRR+GSIK++D + GNQTRVKVVKNK+A PFKQVEFDIMYG G+  +     L
Sbjct: 181 YASVRLDIRRIGSIKERDEVVGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVPRWANWSIL 240

Query: 286 GVKASIV 292
             KA  V
Sbjct: 241 VSKAGSV 247


>gi|289623238|emb|CAX51156.1| recA protein [Aeromonas salmonicida subsp. achromogenes]
          Length = 243

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 181/243 (74%), Positives = 211/243 (86%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L  IA++QK G  CAF+DA
Sbjct: 1   DIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKVCAFIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEI
Sbjct: 61  EHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 121 EGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+SVRLDIRR+G+IK+ D + GN+TRVKVVKNK+A PFKQ EF I YG GIS  GEL+
Sbjct: 181 KFYASVRLDIRRIGAIKEGDEVVGNETRVKVVKNKVAPPFKQAEFQIFYGVGISKEGELV 240

Query: 284 DLG 286
           DLG
Sbjct: 241 DLG 243


>gi|304564627|gb|ADM45177.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564631|gb|ADM45179.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564635|gb|ADM45181.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564639|gb|ADM45183.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 255

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 171/254 (67%), Positives = 216/254 (85%), Gaps = 2/254 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++Q
Sbjct: 1   MRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVID
Sbjct: 59  KMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG
Sbjct: 119 SVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMY
Sbjct: 179 NPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMY 238

Query: 273 GEGISFFGELIDLG 286
           GEGIS  G ++D+G
Sbjct: 239 GEGISREGSILDIG 252


>gi|20161605|dbj|BAB90525.1| putative RecA protein [Oryza sativa Japonica Group]
          Length = 344

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 169/345 (48%), Positives = 239/345 (69%), Gaps = 16/345 (4%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M LG +      + VVS+GS  LD+ALG GG PKGR++E+YGPE+SGKTTLALH IA++Q
Sbjct: 1   MWLG-RSEGRREVPVVSTGSFSLDLALGTGGLPKGRVIEVYGPEASGKTTLALHVIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD   A  +GV+  NLL+SQPD GEQAL + D L+RSG+VD++V+D
Sbjct: 60  KHGGYCAFVDAEHALDPALAESIGVNTSNLLLSQPDCGEQALSLVDTLIRSGSVDVVVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV--- 209
           SVAAL P++E++G+MG++   +QARLMSQALRKL+ S+S S+ IL+FINQ+R K+     
Sbjct: 120 SVAALVPKSELDGEMGDAHVALQARLMSQALRKLSHSLSLSQTILLFINQIRSKVTTFGG 179

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
             G  E T+GGNALKFY+SVR++I+R+G +K  +   G+Q  VK+VKNK A PFK  +F+
Sbjct: 180 FGGPMEVTSGGNALKFYASVRMNIKRIGLVKKGEETIGSQVLVKIVKNKHAPPFKTAQFE 239

Query: 270 IMYGEGISFFGELIDLGVKASIVDK-SGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           + +G+GI    ELI+LG+K  +V K  GA++SF  +   +G++  K +L EN  IA+ +E
Sbjct: 240 LEFGKGICRSSELIELGLKHKLVKKLGGAFYSFNEES-YRGKDALKSYLNENESIAKELE 298

Query: 329 SLLRQNAGLVAD----------SLLQEPAINTKDDADKDDTDNVE 363
           + LR+     A           S L E ++ T+  ++++    +E
Sbjct: 299 TNLRKLMETQAPKKQEDEGDFLSDLPEESLATETSSEEELAAVIE 343


>gi|304564429|gb|ADM45078.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 254

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 172/254 (67%), Positives = 216/254 (85%), Gaps = 2/254 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++Q
Sbjct: 1   MRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVID
Sbjct: 59  KMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG
Sbjct: 119 SVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETT GG ALKFY+++RLD+R+V +IK  + I G++TRVKVVKNK+A PFKQ EFDIMY
Sbjct: 179 NPETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMY 238

Query: 273 GEGISFFGELIDLG 286
           GEGIS  G ++D+G
Sbjct: 239 GEGISREGSILDIG 252


>gi|326407912|gb|ADZ64982.1| recombinase A [Lactococcus lactis subsp. lactis CV56]
          Length = 341

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 135/332 (40%), Positives = 218/332 (65%), Gaps = 5/332 (1%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           RK  +  +K  A+  A   I++ +G   I  L  +G   + ++ + SG L LD A+GIGG
Sbjct: 12  RKLDDPEEKKLAILKATQSIEKKFGSNTI--LNEEGKASQHVQALPSGILSLDCAIGIGG 69

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
           +PKGR++E++G ESSGKTT+AL  +A++QK GG  A++DAE++LD  YA  LGV   +L+
Sbjct: 70  YPKGRLIELFGAESSGKTTVALQAVAETQKNGGYVAYIDAENSLDIEYAENLGVKSNSLI 129

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
            +QPDTGE+A  + +  VR+GA D+IV+DSVAALTP +EI+G     +PG QA++MS+ L
Sbjct: 130 FAQPDTGEEAFYMINEFVRTGAFDLIVVDSVAALTPASEIDGV---KMPGQQAKMMSEQL 186

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
            +L   ++++K +++FINQ+R  +  +F + ETT GG+ALKFYSSVR++++    IKD  
Sbjct: 187 SQLVGKVNQTKTVIIFINQIRSTMSGLFLNKETTPGGSALKFYSSVRIEVKSGEKIKDGI 246

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
              G +T +  VKNK+++P+K+     ++G+G S   +++   ++  +V K G W+SF G
Sbjct: 247 DTIGKKTTLHTVKNKVSAPYKKPTVINIFGDGFSQEIDVVTTALQLGVVKKLGEWYSFNG 306

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
           Q+LG+G    K +L  +  +   +++L R+  
Sbjct: 307 QKLGRGIFGVKEYLSHHPSVFNALDNLTREAL 338


>gi|52630773|gb|AAU84854.1| RecA [Burkholderia plantarii]
          Length = 253

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 191/252 (75%), Positives = 224/252 (88%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 2   EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTEAFID 61

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG+VD+IVIDSVAAL P+AE
Sbjct: 62  AEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSVDMIVIDSVAALVPKAE 121

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           IEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNA
Sbjct: 122 IEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNA 181

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+
Sbjct: 182 LKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRESIFDILYGEGISRQGEI 241

Query: 283 IDLGVKASIVDK 294
           IDLGV+A IVDK
Sbjct: 242 IDLGVQAKIVDK 253


>gi|148897709|emb|CAM18508.1| recombinase A [Ochrobactrum gallinifaecis]
          Length = 238

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 195/235 (82%), Positives = 219/235 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE V +GSL LDIALGIGG PKGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDA
Sbjct: 1   DIETVPTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEI
Sbjct: 61  EHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+SLPG+QARLMSQALRKLT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 121 EGEMGDSLPGLQARLMSQALRKLTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISF 278
           KFY+SVRLDIRR+GSIK++D + GNQTRVKVVKNK+A PFKQVEFDIMYG G+  
Sbjct: 181 KFYASVRLDIRRIGSIKERDEVVGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVPR 235


>gi|52630815|gb|AAU84875.1| RecA [Burkholderia sp. R13392]
          Length = 249

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 186/249 (74%), Positives = 222/249 (89%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAE
Sbjct: 1   IQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIE
Sbjct: 61  HALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 121 GEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALK 180

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+ID
Sbjct: 181 FYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIID 240

Query: 285 LGVKASIVD 293
           LGV+A IVD
Sbjct: 241 LGVQAKIVD 249


>gi|179185081|gb|ACB78169.1| RecA [Vibrio sp. CECT 7225]
          Length = 251

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 173/253 (68%), Positives = 212/253 (83%), Gaps = 2/253 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRI E+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIXEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+ VRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYAXVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFFGELI 283
           +YG+G +  GELI
Sbjct: 239 LYGKGFNREGELI 251


>gi|52630831|gb|AAU84883.1| RecA [Burkholderia ubonensis]
          Length = 249

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 188/249 (75%), Positives = 221/249 (88%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AE
Sbjct: 61  AEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           IEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNA
Sbjct: 121 IEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNA 180

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+
Sbjct: 181 LKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEI 240

Query: 283 IDLGVKASI 291
           IDLGV+A I
Sbjct: 241 IDLGVQAKI 249


>gi|223635955|emb|CAQ03779.1| recombination-repair protein [Vibrio cholerae]
          Length = 248

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 166/250 (66%), Positives = 210/250 (84%), Gaps = 2/250 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAV
Sbjct: 59  LIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAV 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ 
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEA 238

Query: 267 EFDIMYGEGI 276
              I  G+G 
Sbjct: 239 NTQIRNGQGF 248


>gi|304564451|gb|ADM45089.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564453|gb|ADM45090.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564455|gb|ADM45091.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564457|gb|ADM45092.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564461|gb|ADM45094.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564557|gb|ADM45142.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564559|gb|ADM45143.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 256

 Score =  257 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 171/258 (66%), Positives = 216/258 (83%), Gaps = 2/258 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK
Sbjct: 1   RLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQK 58

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDS
Sbjct: 59  MGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDS 118

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           VAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+
Sbjct: 119 VAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGN 178

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYG
Sbjct: 179 PETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYG 238

Query: 274 EGISFFGELIDLGVKASI 291
           EGIS  G ++D+G    I
Sbjct: 239 EGISREGSILDIGASIDI 256


>gi|30691959|gb|AAP33473.1| recombinase A [Pantoea stewartii subsp. indologenes]
          Length = 253

 Score =  257 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 176/255 (69%), Positives = 218/255 (85%), Gaps = 2/255 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPE+SGKTTL L  I
Sbjct: 1   KGSIMPLGEARSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIG
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D++ G++TRVKVVKNK+A+PFKQ EF
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSETRVKVVKNKIAAPFKQAEF 238

Query: 269 DIMYGEGISFFGELI 283
            IMYGEGI+ FGE++
Sbjct: 239 QIMYGEGINTFGEVV 253


>gi|304564421|gb|ADM45074.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564441|gb|ADM45084.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 256

 Score =  257 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 172/258 (66%), Positives = 216/258 (83%), Gaps = 2/258 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK
Sbjct: 1   RLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQK 58

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDS
Sbjct: 59  MGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDS 118

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           VAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+
Sbjct: 119 VAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGN 178

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PETT GG ALKFY+++RLD+R+V +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYG
Sbjct: 179 PETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYG 238

Query: 274 EGISFFGELIDLGVKASI 291
           EGIS  G ++D+G    I
Sbjct: 239 EGISREGSILDIGASIDI 256


>gi|6694817|gb|AAF25402.1|AF214755_1 RecA protein [Arthrobacter sp. 'SMCC ZAT012']
          Length = 246

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 163/246 (66%), Positives = 204/246 (82%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHA
Sbjct: 1   VIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YA KLGVD   LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEIEGD
Sbjct: 61  LDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIEGD 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+S  G+QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY
Sbjct: 121 MGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFY 180

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
           +S+R+D+RR+ ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS  G +ID+G
Sbjct: 181 ASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQGISREGGIIDMG 240

Query: 287 VKASIV 292
           V+  ++
Sbjct: 241 VEHGLI 246


>gi|52630783|gb|AAU84859.1| RecA [Pandoraea pulmonicola]
          Length = 246

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 183/246 (74%), Positives = 216/246 (87%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           VVS+GSLGLDIALG+GG P+GR++EIYGPESSGKTTL L  +A+ QK GGTCAF+DAEHA
Sbjct: 1   VVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YA KLGV +  LLISQPDTGEQALEI D LVRSG++D+I+IDSVAAL P+AEIEG+
Sbjct: 61  LDVGYASKLGVSVPELLISQPDTGEQALEIADALVRSGSIDLIIIDSVAALVPKAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+SLPG+QARLMSQALRKLT +I R+ C ++FINQ+RMKIGVMFG+PETTTGGNALKFY
Sbjct: 121 MGDSLPGLQARLMSQALRKLTGTIKRTNCTVIFINQIRMKIGVMFGNPETTTGGNALKFY 180

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
           SSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YG+GIS  GE+IDLG
Sbjct: 181 SSVRLDIRRIGSIKKGDEVVGNETRVKVVKNKVSPPFREPIFDILYGQGISREGEIIDLG 240

Query: 287 VKASIV 292
           V A IV
Sbjct: 241 VTAKIV 246


>gi|223470142|gb|ACM90398.1| recombinase A [Streptococcus salivarius]
 gi|223470150|gb|ACM90402.1| recombinase A [Streptococcus salivarius]
          Length = 266

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 164/264 (62%), Positives = 211/264 (79%), Gaps = 4/264 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+D
Sbjct: 3   QKVQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQTQKEGGIAAFID 62

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAE
Sbjct: 63  AEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAE 122

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           I+GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+G+MFG+PETT GG A
Sbjct: 123 IDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRA 182

Query: 223 LKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISF 278
           LKFY+SVRLD+R    IK     KD   G +T++KVVKNK+A PFK+   +IMYGEGIS 
Sbjct: 183 LKFYASVRLDVRGNTQIKGTGDKKDQNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISQ 242

Query: 279 FGELIDLGVKASIVDKSGAWFSFK 302
            GEL+ +     I+ K+GAWFS+ 
Sbjct: 243 TGELVKIASDLGIIQKAGAWFSYN 266


>gi|258611748|ref|ZP_05711623.1| recombinase recA [Listeria monocytogenes FSL R2-503]
 gi|258605867|gb|EEW18475.1| recombinase recA [Listeria monocytogenes FSL R2-503]
          Length = 242

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 152/243 (62%), Positives = 195/243 (80%), Gaps = 2/243 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GR
Sbjct: 1   MNDRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YGPESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPD
Sbjct: 59  IIEVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            I++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR   +K    + GN
Sbjct: 179 VINKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGN 238

Query: 249 QTR 251
           + +
Sbjct: 239 KNK 241


>gi|179185096|gb|ACB78170.1| RecA [Vibrio sp. RD 9.17]
          Length = 250

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 174/252 (69%), Positives = 212/252 (84%), Gaps = 2/252 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +
Sbjct: 1   IMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VI
Sbjct: 59  QKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVI 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAALTP+AEIEG+MG+S  G+QAR++ QA+RKLT ++ +S C+ +FINQ+RMKIGVMF
Sbjct: 119 DSVAALTPKAEIEGEMGDSHMGLQARMLXQAMRKLTGNLKQSNCMAIFINQIRMKIGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I+
Sbjct: 179 GNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQIL 238

Query: 272 YGEGISFFGELI 283
           YG+G +  GELI
Sbjct: 239 YGKGFNREGELI 250


>gi|223470144|gb|ACM90399.1| recombinase A [Streptococcus salivarius]
 gi|223470146|gb|ACM90400.1| recombinase A [Streptococcus salivarius]
          Length = 269

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 164/268 (61%), Positives = 211/268 (78%), Gaps = 4/268 (1%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
               + ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  
Sbjct: 2   ERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQTQKEGGIA 61

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AF+DAEHALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL 
Sbjct: 62  AFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALV 121

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           PRAEI+GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+G+MFG+PETT 
Sbjct: 122 PRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTP 181

Query: 219 GGNALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           GG ALKFY+SVRLD+R    IK     KD   G +T++KVVKNK+A PFK+   +IMYGE
Sbjct: 182 GGRALKFYASVRLDVRGNTQIKGTGDKKDQNVGKETKIKVVKNKVAPPFKEAFVEIMYGE 241

Query: 275 GISFFGELIDLGVKASIVDKSGAWFSFK 302
           GIS  GEL+ +     I+ K+GAWFS+ 
Sbjct: 242 GISQTGELVKIASDLGIIQKAGAWFSYN 269


>gi|52630827|gb|AAU84881.1| RecA [Burkholderia ubonensis]
          Length = 249

 Score =  256 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 187/248 (75%), Positives = 220/248 (88%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DA
Sbjct: 2   DIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEI
Sbjct: 62  EHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEI 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 122 EGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNAL 181

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+I
Sbjct: 182 KFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEII 241

Query: 284 DLGVKASI 291
           DLGV+A I
Sbjct: 242 DLGVQAKI 249


>gi|306517925|emb|CBL53386.1| recombination-repair protein [Photobacterium ganghwense]
          Length = 254

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 173/250 (69%), Positives = 214/250 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DA
Sbjct: 5   DVETVSTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAAAQRDGKTCAFIDA 64

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGAVDI+V+DSVAALTP+AEI
Sbjct: 65  EHALDPVYAKKLGVDIDQLLVSQPDTGEQALEIADALARSGAVDILVVDSVAALTPKAEI 124

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 125 EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNAL 184

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ +  I+YG+G +  GEL+
Sbjct: 185 KFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKQADTQILYGQGFNRNGELV 244

Query: 284 DLGVKASIVD 293
           DLGVK  +++
Sbjct: 245 DLGVKHKMIE 254


>gi|3425913|emb|CAA11602.1| recA [Neisseria cinerea]
          Length = 237

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 172/237 (72%), Positives = 204/237 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKTTL L  +AQ QK GG CAF+DAEHA D
Sbjct: 1   STGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVAQCQKDGGVCAFIDAEHAFD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGV ++ L +SQPDTGEQALEI D LVRSG VD++V+DSVAAL P+AEIEGDMG
Sbjct: 61  PVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGVDMVVVDSVAALVPKAEIEGDMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+ ARLMSQALRKLT  I ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSS
Sbjct: 121 DSHVGLHARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           VRLDIRR G IK  + + GN+TRVKV+KNK+A PF+Q EFDI+YGEG+S+ GELID+
Sbjct: 181 VRLDIRRTGQIKKGEEVIGNETRVKVIKNKVAPPFRQAEFDILYGEGVSWEGELIDI 237


>gi|3425909|emb|CAA11600.1| recA [Neisseria cinerea]
 gi|3425911|emb|CAA11601.1| recA [Neisseria cinerea]
          Length = 237

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 172/237 (72%), Positives = 204/237 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKTTL L  +AQ QK GG CAF+DAEHA D
Sbjct: 1   STGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVAQCQKDGGVCAFIDAEHAFD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGV ++ L +SQPDTGEQALEI D LVRSG VD++V+DSVAAL P+AEIEGDMG
Sbjct: 61  PVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGVDMVVVDSVAALVPKAEIEGDMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+ ARLMSQALRKLT  I ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSS
Sbjct: 121 DSHVGLHARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           VRLDIRR G IK  + + GN+TRVKV+KNK+A PF+Q EFDI+YGEG+S+ GELID+
Sbjct: 181 VRLDIRRAGQIKKGEEVIGNETRVKVIKNKVAPPFRQAEFDILYGEGVSWEGELIDI 237


>gi|59798248|sp|Q6F1R0|RECA_MESFL RecName: Full=Protein RecA; AltName: Full=Recombinase A
          Length = 333

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 164/327 (50%), Positives = 239/327 (73%), Gaps = 2/327 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
            N + K++AL +AL  I++ YGK A++       I   +  +SSGS  +D A+GIGG+PK
Sbjct: 4   KNEIWKNEALISALKTIEKNYGKEALVVYNEGDDIDHDV--ISSGSFLIDQAIGIGGYPK 61

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEI+GPESSGKTTLALH IA++QK G   AF+DAEH+LD  YA+K+GVD+ +LL+SQ
Sbjct: 62  GRVVEIFGPESSGKTTLALHAIAEAQKQGEIAAFIDAEHSLDLNYAKKIGVDINSLLVSQ 121

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P  GE+AL+I + LV+S ++ +IV+DSVAAL P+ E+EG+M +   G+QAR+MS+ALRKL
Sbjct: 122 PSYGEEALDILETLVKSNSISLIVVDSVAALVPKTELEGEMSDQSIGLQARMMSKALRKL 181

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
              IS+SK  ++FINQ+R KIG+MFG+PETTTGG ALKF+S++R+++R+  S+ +   + 
Sbjct: 182 NGVISKSKTTVIFINQLREKIGIMFGNPETTTGGRALKFFSTLRIEVRKGESLIENGIVV 241

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
            N+ +VKVVKNK+A PFKQ    I Y +GI    E+I+L    +I+DKSG W+S++ +++
Sbjct: 242 ANKVKVKVVKNKVAVPFKQTLITIGYDKGIERINEIIELATLYNILDKSGVWYSYEKEKI 301

Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333
           GQG+   K +L +N +    IE  L++
Sbjct: 302 GQGKNAVKEWLNKNPDKLSKIEFELKE 328


>gi|289623230|emb|CAX51152.1| recA protein [Aeromonas encheleia]
          Length = 239

 Score =  255 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 178/239 (74%), Positives = 206/239 (86%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L  IA++Q  G  CAF+DA
Sbjct: 1   DIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQNKGKVCAFIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEI
Sbjct: 61  EHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 121 EGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           KFY+SVRLDIRR+G+IKD D + GN+TRVKVVKNK+A PFKQ EF I YG GIS  GEL
Sbjct: 181 KFYASVRLDIRRIGAIKDGDEVVGNETRVKVVKNKVAPPFKQAEFQIFYGVGISKEGEL 239


>gi|28864690|gb|AAO48937.1| recombinase A subunit [Erwinia chrysanthemi]
          Length = 245

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 173/246 (70%), Positives = 211/246 (85%), Gaps = 2/246 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   S+   +E +S+GSL LDIALG+GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGEDRSM--DVETISTGSLSLDIALGVGGLPMGRIVEIYGPESSGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQRGGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKI
Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ + + G++TRVKVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGEEVVGSETRVKVVKNKVAAPFKQAE 238

Query: 268 FDIMYG 273
           F IMYG
Sbjct: 239 FQIMYG 244


>gi|30266991|gb|AAP21604.1| recombinase A [Pectobacterium wasabiae]
          Length = 245

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 171/247 (69%), Positives = 209/247 (84%), Gaps = 2/247 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKI
Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD + + G++TRVKVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVGSETRVKVVKNKVAAPFKQAE 238

Query: 268 FDIMYGE 274
           F IM+G 
Sbjct: 239 FQIMFGR 245


>gi|289623234|emb|CAX51154.1| recA protein [Aeromonas simiae]
          Length = 239

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 181/239 (75%), Positives = 210/239 (87%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSL LDIALGIGG P GRIVEIYGPESSGKTTL L  IA++QK G TCAFVDA
Sbjct: 1   DIEAISTGSLSLDIALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSGAVD+I++DSVAALTP+AEI
Sbjct: 61  EHALDPIYAAKLGVNVDDLLVSQPDTGEQALEICDMLVRSGAVDVIIVDSVAALTPKAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 121 EGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGNPETTTGGNAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           KFY+SVRLDIRR+G+IKD + + GN+TRVKVVKNK+A PFKQ EF IMYG GIS  GEL
Sbjct: 181 KFYASVRLDIRRIGAIKDGEEVVGNETRVKVVKNKVAPPFKQAEFQIMYGAGISKEGEL 239


>gi|50365022|ref|YP_053447.1| recombinase A [Mesoplasma florum L1]
 gi|50363578|gb|AAT75563.1| recombinase A [Mesoplasma florum L1]
          Length = 346

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 164/333 (49%), Positives = 240/333 (72%), Gaps = 2/333 (0%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +      N + K++AL +AL  I++ YGK A++       I   +  +SSGS  +D A+G
Sbjct: 11  LKTMSSKNEIWKNEALISALKTIEKNYGKEALVVYNEGDDIDHDV--ISSGSFLIDQAIG 68

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG+PKGR+VEI+GPESSGKTTLALH IA++QK G   AF+DAEH+LD  YA+K+GVD+ 
Sbjct: 69  IGGYPKGRVVEIFGPESSGKTTLALHAIAEAQKQGEIAAFIDAEHSLDLNYAKKIGVDIN 128

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +LL+SQP  GE+AL+I + LV+S ++ +IV+DSVAAL P+ E+EG+M +   G+QAR+MS
Sbjct: 129 SLLVSQPSYGEEALDILETLVKSNSISLIVVDSVAALVPKTELEGEMSDQSIGLQARMMS 188

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           +ALRKL   IS+SK  ++FINQ+R KIG+MFG+PETTTGG ALKF+S++R+++R+  S+ 
Sbjct: 189 KALRKLNGVISKSKTTVIFINQLREKIGIMFGNPETTTGGRALKFFSTLRIEVRKGESLI 248

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           +   +  N+ +VKVVKNK+A PFKQ    I Y +GI    E+I+L    +I+DKSG W+S
Sbjct: 249 ENGIVVANKVKVKVVKNKVAVPFKQTLITIGYDKGIERINEIIELATLYNILDKSGVWYS 308

Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           ++ +++GQG+   K +L +N +    IE  L++
Sbjct: 309 YEKEKIGQGKNAVKEWLNKNPDKLSKIEFELKE 341


>gi|304564463|gb|ADM45095.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564465|gb|ADM45096.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564467|gb|ADM45097.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564469|gb|ADM45098.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564471|gb|ADM45099.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564473|gb|ADM45100.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564475|gb|ADM45101.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564477|gb|ADM45102.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564497|gb|ADM45112.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564499|gb|ADM45113.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564501|gb|ADM45114.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564567|gb|ADM45147.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564571|gb|ADM45149.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564573|gb|ADM45150.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564575|gb|ADM45151.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564577|gb|ADM45152.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564579|gb|ADM45153.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564581|gb|ADM45154.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564583|gb|ADM45155.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564585|gb|ADM45156.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564587|gb|ADM45157.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564589|gb|ADM45158.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564591|gb|ADM45159.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564593|gb|ADM45160.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564595|gb|ADM45161.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564597|gb|ADM45162.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564599|gb|ADM45163.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564601|gb|ADM45164.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564679|gb|ADM45203.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564683|gb|ADM45205.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564685|gb|ADM45206.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564689|gb|ADM45208.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564693|gb|ADM45210.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564695|gb|ADM45211.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564697|gb|ADM45212.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564699|gb|ADM45213.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564701|gb|ADM45214.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564703|gb|ADM45215.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564705|gb|ADM45216.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564717|gb|ADM45222.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564721|gb|ADM45224.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564723|gb|ADM45225.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564725|gb|ADM45226.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564727|gb|ADM45227.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564737|gb|ADM45232.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564739|gb|ADM45233.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564749|gb|ADM45238.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564751|gb|ADM45239.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564753|gb|ADM45240.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 255

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 170/257 (66%), Positives = 215/257 (83%), Gaps = 2/257 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK
Sbjct: 1   RLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQK 58

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDS
Sbjct: 59  MGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDS 118

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           VAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+
Sbjct: 119 VAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGN 178

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYG
Sbjct: 179 PETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYG 238

Query: 274 EGISFFGELIDLGVKAS 290
           EGIS  G ++D+G    
Sbjct: 239 EGISREGSILDIGASID 255


>gi|289623222|emb|CAX51148.1| recA protein [Aeromonas caviae]
          Length = 239

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 179/239 (74%), Positives = 206/239 (86%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L  IA++Q  G TCAFVDA
Sbjct: 1   DIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQNNGKTCAFVDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEI
Sbjct: 61  EHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 121 EGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           KFY+SVRLDIRR G+IK+ D + GN+TRVKVVKNK+A PFKQ EF I YG GIS  GEL
Sbjct: 181 KFYASVRLDIRRTGAIKEGDEVVGNETRVKVVKNKVAPPFKQAEFQIFYGAGISKEGEL 239


>gi|261414357|gb|ACX83587.1| RecA [Aeromonas sanarellii]
          Length = 239

 Score =  255 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 179/239 (74%), Positives = 207/239 (86%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L  IA++Q+ G TCAFVDA
Sbjct: 1   DIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQRKGKTCAFVDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEI
Sbjct: 61  EHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 121 EGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           KFY+SVRLDIRR G+IK+ D + GN+TRVKVVKNK+A PFKQ EF I YG GIS  GEL
Sbjct: 181 KFYASVRLDIRRTGAIKEGDEVVGNETRVKVVKNKVAPPFKQAEFQIFYGAGISKEGEL 239


>gi|169248064|gb|ACA51815.1| RecA [Aliivibrio salmonicida]
          Length = 244

 Score =  255 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 177/244 (72%), Positives = 210/244 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IAQ+QK G TCAF+DAEHALD
Sbjct: 1   STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAQAQKAGKTCAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYA+KLGVD+  LL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG
Sbjct: 61  PIYAQKLGVDIDQLLCSQPDTGEQALEIVDALARSGAVDLIVVDSVAALTPKAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+S
Sbjct: 121 DSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           VRLDIRR G++KD D + GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK
Sbjct: 181 VRLDIRRTGAVKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVK 240

Query: 289 ASIV 292
             +V
Sbjct: 241 HKLV 244


>gi|282897095|ref|ZP_06305097.1| RecA DNA recombination protein [Raphidiopsis brookii D9]
 gi|281197747|gb|EFA72641.1| RecA DNA recombination protein [Raphidiopsis brookii D9]
          Length = 258

 Score =  255 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 164/250 (65%), Positives = 200/250 (80%), Gaps = 3/250 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL   L+QI+R +GKGAIM+LG    +   +E +S+G+L LD+ALG GG PKGR++E
Sbjct: 10  KQKALSMVLNQIERSFGKGAIMRLGDATRMR--VETISTGALTLDLALG-GGLPKGRVIE 66

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH IA+ Q+ GG  AFVDAEHALD  YA  LGVD++NLL+SQPDTGE
Sbjct: 67  IYGPESSGKTTVALHAIAEVQRNGGIAAFVDAEHALDPTYAGALGVDIENLLVSQPDTGE 126

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
             LEI D LVRS AVDI+VIDSVAAL PRAEIEGDMG++  G+QARLMSQALRK+T +I 
Sbjct: 127 AGLEIVDQLVRSAAVDIVVIDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKITGNIG 186

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S C ++FINQ+R KIGV +GSPETTTGGNALKFY+SVRLDIRR+ ++K      GN+ +
Sbjct: 187 KSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGSDEFGNRVK 246

Query: 252 VKVVKNKMAS 261
           VKV KNK  +
Sbjct: 247 VKVAKNKSCT 256


>gi|304564411|gb|ADM45069.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564413|gb|ADM45070.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564423|gb|ADM45075.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564425|gb|ADM45076.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564427|gb|ADM45077.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564447|gb|ADM45087.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 255

 Score =  255 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 171/257 (66%), Positives = 215/257 (83%), Gaps = 2/257 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK
Sbjct: 1   RLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQK 58

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDS
Sbjct: 59  MGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDS 118

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           VAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+
Sbjct: 119 VAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGN 178

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PETT GG ALKFY+++RLD+R+V +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYG
Sbjct: 179 PETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYG 238

Query: 274 EGISFFGELIDLGVKAS 290
           EGIS  G ++D+G    
Sbjct: 239 EGISREGSILDIGASID 255


>gi|304564669|gb|ADM45198.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 255

 Score =  255 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 169/257 (65%), Positives = 214/257 (83%), Gaps = 2/257 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK
Sbjct: 1   RLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQK 58

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GGT AF+DAEHALD +YA+ LG ++++LL++QPDTGEQALEI + LVRSGAVDIIVIDS
Sbjct: 59  MGGTGAFIDAEHALDPVYAKNLGANIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDS 118

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           VAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+
Sbjct: 119 VAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGN 178

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYG
Sbjct: 179 PETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYG 238

Query: 274 EGISFFGELIDLGVKAS 290
           EGIS  G ++D+G    
Sbjct: 239 EGISREGSILDIGASID 255


>gi|297530529|ref|YP_003671804.1| recA protein [Geobacillus sp. C56-T3]
 gi|297253781|gb|ADI27227.1| recA protein [Geobacillus sp. C56-T3]
          Length = 280

 Score =  255 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 155/273 (56%), Positives = 202/273 (73%), Gaps = 6/273 (2%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEH------ALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           +   T     K G      +AE       +LD IYA+KLGV++  LL+SQPDTGEQALEI
Sbjct: 1   MCGETRTHGVKRGKIAPPGNAEGDYYLSLSLDPIYAQKLGVNIDELLLSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            + LVRSGAVDIIVIDSVAAL P+AEIEG+MG++  G+QARLMSQALRKL+ +I++SK I
Sbjct: 61  AEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLSGAINKSKTI 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+R K+GVMFG+PETT GG ALKFY+SVRL++RR   IK  + + GN+T++KVVK
Sbjct: 121 AIFINQIREKVGVMFGNPETTPGGRALKFYASVRLEVRRAEQIKQGNDMVGNKTKIKVVK 180

Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316
           NK+A PFK  + DIMYGEGIS  GE++D+  +  IV KSG+W+S+K +RLGQGREN+K F
Sbjct: 181 NKVAPPFKTADVDIMYGEGISREGEILDMASELDIVQKSGSWYSYKDERLGQGRENAKQF 240

Query: 317 LRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
           L+EN  IA+ I   +RQ+ G+  +    EP  +
Sbjct: 241 LKENPHIADEIARAIRQHYGIDVEEGTSEPQQD 273


>gi|304564405|gb|ADM45066.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564409|gb|ADM45068.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564443|gb|ADM45085.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 253

 Score =  255 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 171/253 (67%), Positives = 215/253 (84%), Gaps = 2/253 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK
Sbjct: 1   RLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQK 58

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDS
Sbjct: 59  MGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDS 118

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           VAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+
Sbjct: 119 VAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGN 178

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PETT GG ALKFY+++RLD+R+V +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYG
Sbjct: 179 PETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYG 238

Query: 274 EGISFFGELIDLG 286
           EGIS  G ++D+G
Sbjct: 239 EGISREGSILDIG 251


>gi|304564481|gb|ADM45104.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564491|gb|ADM45109.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564493|gb|ADM45110.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564495|gb|ADM45111.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564509|gb|ADM45118.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564511|gb|ADM45119.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564637|gb|ADM45182.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564779|gb|ADM45253.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564781|gb|ADM45254.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564783|gb|ADM45255.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564785|gb|ADM45256.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564787|gb|ADM45257.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564789|gb|ADM45258.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564791|gb|ADM45259.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564793|gb|ADM45260.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564795|gb|ADM45261.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564799|gb|ADM45263.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564801|gb|ADM45264.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 253

 Score =  255 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 170/253 (67%), Positives = 215/253 (84%), Gaps = 2/253 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK
Sbjct: 1   RLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQK 58

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDS
Sbjct: 59  MGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDS 118

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           VAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+
Sbjct: 119 VAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGN 178

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYG
Sbjct: 179 PETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYG 238

Query: 274 EGISFFGELIDLG 286
           EGIS  G ++D+G
Sbjct: 239 EGISREGSILDIG 251


>gi|169248076|gb|ACA51821.1| RecA [Aliivibrio logei]
 gi|169248078|gb|ACA51822.1| RecA [Aliivibrio logei]
 gi|169248080|gb|ACA51823.1| RecA [Aliivibrio logei]
          Length = 244

 Score =  255 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 176/244 (72%), Positives = 210/244 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IAQ+QK G TCAF+DAEHALD
Sbjct: 1   STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEAIAQAQKAGKTCAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YA+KLGVD+  LL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG
Sbjct: 61  PVYAQKLGVDIDQLLCSQPDTGEQALEIVDALARSGAVDVIVVDSVAALTPKAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+S
Sbjct: 121 DSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           VRLDIRR G++KD D + GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK
Sbjct: 181 VRLDIRRTGAVKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVK 240

Query: 289 ASIV 292
             +V
Sbjct: 241 HKLV 244


>gi|304564655|gb|ADM45191.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564657|gb|ADM45192.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564659|gb|ADM45193.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564661|gb|ADM45194.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564713|gb|ADM45220.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564715|gb|ADM45221.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564755|gb|ADM45241.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564757|gb|ADM45242.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564759|gb|ADM45243.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564761|gb|ADM45244.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564763|gb|ADM45245.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564765|gb|ADM45246.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564767|gb|ADM45247.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564769|gb|ADM45248.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564771|gb|ADM45249.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564773|gb|ADM45250.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564775|gb|ADM45251.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564777|gb|ADM45252.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 254

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 170/253 (67%), Positives = 215/253 (84%), Gaps = 2/253 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK
Sbjct: 1   RLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQK 58

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDS
Sbjct: 59  MGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDS 118

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           VAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+
Sbjct: 119 VAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGN 178

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYG
Sbjct: 179 PETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYG 238

Query: 274 EGISFFGELIDLG 286
           EGIS  G ++D+G
Sbjct: 239 EGISREGSILDIG 251


>gi|169248060|gb|ACA51813.1| RecA [Aliivibrio logei]
 gi|169248062|gb|ACA51814.1| RecA [Aliivibrio logei]
 gi|169248066|gb|ACA51816.1| RecA [Aliivibrio logei]
 gi|169248068|gb|ACA51817.1| RecA [Aliivibrio logei]
 gi|169248074|gb|ACA51820.1| RecA [Aliivibrio logei]
          Length = 244

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 177/244 (72%), Positives = 210/244 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IAQ+QK G TCAF+DAEHALD
Sbjct: 1   STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEAIAQAQKAGKTCAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYA+KLGVD+  LL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG
Sbjct: 61  PIYAQKLGVDIDQLLCSQPDTGEQALEIVDALARSGAVDVIVVDSVAALTPKAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+S
Sbjct: 121 DSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           VRLDIRR G++KD D + GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK
Sbjct: 181 VRLDIRRTGAVKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVK 240

Query: 289 ASIV 292
             +V
Sbjct: 241 HKLV 244


>gi|304564415|gb|ADM45071.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564445|gb|ADM45086.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564807|gb|ADM45267.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 254

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 171/253 (67%), Positives = 215/253 (84%), Gaps = 2/253 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK
Sbjct: 1   RLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQK 58

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDS
Sbjct: 59  MGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDS 118

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           VAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+
Sbjct: 119 VAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGN 178

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PETT GG ALKFY+++RLD+R+V +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYG
Sbjct: 179 PETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYG 238

Query: 274 EGISFFGELIDLG 286
           EGIS  G ++D+G
Sbjct: 239 EGISREGSILDIG 251


>gi|261414355|gb|ACX83586.1| RecA [Aeromonas taiwanensis]
          Length = 239

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 179/239 (74%), Positives = 207/239 (86%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L  IA++QK G TCAFVDA
Sbjct: 1   DIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEI
Sbjct: 61  EHALDPVYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 121 EGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           KFY+SVRLDIRR G+IK+ D + GN+TRVKVVKNK+A PFKQ EF I YG GIS  GEL
Sbjct: 181 KFYASVRLDIRRTGAIKEGDEVVGNETRVKVVKNKVAPPFKQAEFQIFYGAGISKEGEL 239


>gi|289623220|emb|CAX51147.1| recA protein [Aeromonas jandaei]
 gi|289623224|emb|CAX51149.1| recA protein [Aeromonas enteropelogenes]
          Length = 239

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 180/239 (75%), Positives = 207/239 (86%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L  IA++QK G TCAFVDA
Sbjct: 1   DIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEI
Sbjct: 61  EHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 121 EGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           KFY+SVRLDIRR G+IK+ D + GN+TRVKVVKNK+A PFKQ EF I YG GIS  GEL
Sbjct: 181 KFYASVRLDIRRTGAIKEGDEVVGNETRVKVVKNKVAPPFKQAEFQIFYGAGISKEGEL 239


>gi|304564741|gb|ADM45234.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 255

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 169/257 (65%), Positives = 214/257 (83%), Gaps = 2/257 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK
Sbjct: 1   RLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQK 58

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDS
Sbjct: 59  MGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDS 118

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           VAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+
Sbjct: 119 VAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGN 178

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYG
Sbjct: 179 PETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYG 238

Query: 274 EGISFFGELIDLGVKAS 290
           EG S  G ++D+G    
Sbjct: 239 EGXSREGSILDIGASID 255


>gi|289623210|emb|CAX51142.1| recA protein [Aeromonas veronii]
 gi|289623212|emb|CAX51143.1| recA protein [Aeromonas allosaccharophila]
 gi|289623226|emb|CAX51150.1| recA protein [Aeromonas media]
 gi|289623228|emb|CAX51151.1| recA protein [Aeromonas hydrophila]
          Length = 239

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 180/239 (75%), Positives = 208/239 (87%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L  IA++QK G TCAFVDA
Sbjct: 1   DIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEI
Sbjct: 61  EHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 121 EGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           KFY+SVRLDIRR+G+IK+ D + GN+TRVKVVKNK+A PFKQ EF I YG GIS  GEL
Sbjct: 181 KFYASVRLDIRRIGAIKEGDEVVGNETRVKVVKNKVAPPFKQAEFQIFYGAGISKEGEL 239


>gi|3425923|emb|CAA11612.1| recA [Neisseria elongata subsp. elongata]
 gi|3425925|emb|CAA11613.1| recA [Neisseria elongata]
          Length = 237

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 177/237 (74%), Positives = 208/237 (87%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKTTL L TIAQ QK GG CAF+DAE+A D
Sbjct: 1   STGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLETIAQCQKNGGVCAFIDAENAFD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYARKLGV ++ L++SQPDTGEQALEI DMLVRSG VD++VIDSVAAL P+AEIEGDMG
Sbjct: 61  PIYARKLGVKVEELMVSQPDTGEQALEICDMLVRSGGVDMVVIDSVAALVPKAEIEGDMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRKLT  I ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+S
Sbjct: 121 DSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           VRLDIRR G IK  D + GN+T+VKV+KNK+A PF+Q EFDI+YGEG+S+ GELIDL
Sbjct: 181 VRLDIRRTGQIKKGDDVIGNETKVKVIKNKVAPPFRQAEFDILYGEGVSWEGELIDL 237


>gi|30266979|gb|AAP21598.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum]
          Length = 245

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 173/247 (70%), Positives = 210/247 (85%), Gaps = 2/247 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGEDRSM--NVEPISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKI
Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD + + G++TRVKVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVGSETRVKVVKNKVAAPFKQAE 238

Query: 268 FDIMYGE 274
           F IMYGE
Sbjct: 239 FQIMYGE 245


>gi|30266975|gb|AAP21596.1| recombinase A [Pectobacterium atrosepticum]
          Length = 245

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 172/247 (69%), Positives = 210/247 (85%), Gaps = 2/247 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKI
Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAE 238

Query: 268 FDIMYGE 274
           F IMYGE
Sbjct: 239 FQIMYGE 245


>gi|223717669|emb|CAX46414.1| recombination-repair protein [Vibrio natriegens]
          Length = 248

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 169/247 (68%), Positives = 210/247 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DA
Sbjct: 2   DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEI
Sbjct: 62  EHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEI 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 122 EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNAL 181

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GEL+
Sbjct: 182 KFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELV 241

Query: 284 DLGVKAS 290
           DLGVK  
Sbjct: 242 DLGVKHK 248


>gi|3421224|emb|CAA11594.1| recA [Neisseria lactamica]
 gi|3421226|emb|CAA11595.1| recA [Neisseria lactamica]
 gi|3421228|emb|CAA11596.1| recA [Neisseria lactamica]
 gi|3421230|emb|CAA11597.1| recA [Neisseria lactamica]
          Length = 237

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 175/237 (73%), Positives = 206/237 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKTTL L  +AQ QK GG CAFVDAEHA D
Sbjct: 1   STGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGV ++ L +SQPDTGEQALEI D LVRSG VD++V+DSVAAL P+AEIEGDMG
Sbjct: 61  PVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGVDMVVVDSVAALVPKAEIEGDMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRKLT  I ++  +++FINQ+RMKIGVMFGSPETTTGGNALKFYSS
Sbjct: 121 DSHVGLQARLMSQALRKLTGHIKKTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYSS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           VRLDIRR GSIK  + + GN+TRVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+
Sbjct: 181 VRLDIRRTGSIKKGEEVLGNETRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDI 237


>gi|89145173|emb|CAJ57522.1| recombinase A [Microbacterium kitamiense]
          Length = 238

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 161/237 (67%), Positives = 196/237 (82%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL LH IA  Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DML
Sbjct: 1   TTLTLHAIANVQRAGGIAAFIDAEHALDPDYAQKLGVDIDALLVSQPDTGEQALEIADML 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGA+D++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  ++++   ++FI
Sbjct: 61  VRSGAIDLVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA
Sbjct: 121 NQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKMA 180

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317
            PFKQ EFDI+YG GIS  G LID GV+ +IV KSGAW+++ G++LGQG+EN++ FL
Sbjct: 181 PPFKQAEFDILYGVGISREGSLIDFGVEHAIVKKSGAWYTYDGEQLGQGKENARNFL 237


>gi|89145175|emb|CAJ57523.1| recombinase A [Microbacterium lacticum]
          Length = 237

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 160/236 (67%), Positives = 194/236 (82%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL LH IA  Q+ GG  AFVDAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DMLV
Sbjct: 1   TLTLHAIANVQRAGGIAAFVDAEHALDPDYAQKLGVDIDQLLVSQPDTGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  ++++   ++FIN
Sbjct: 61  RSGAIDLVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTGTTMIFIN 120

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA 
Sbjct: 121 QLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKMAP 180

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317
           PFKQ EFDI+YG GIS  G LID GV+  +V KSGAW+++ G++LGQG+EN++ FL
Sbjct: 181 PFKQAEFDILYGVGISREGSLIDFGVEHGLVKKSGAWYTYDGEQLGQGKENARNFL 236


>gi|3421168|emb|CAA11604.1| recA [Neisseria flava]
          Length = 237

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 172/237 (72%), Positives = 205/237 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLG+D+ALG+GG P+GR+VEI+GPESSGKTTL L  IAQ QK GG CAF+DAEHA D
Sbjct: 1   STGSLGVDLALGVGGLPRGRVVEIFGPESSGKTTLCLEAIAQCQKNGGICAFIDAEHAFD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGV ++ L +SQPDTGEQALEI D LVRSG VD++V+DSVAAL P+AEIEG+MG
Sbjct: 61  PVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGVDMVVVDSVAALVPKAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRKLT  I R+  ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+S
Sbjct: 121 DSHVGLQARLMSQALRKLTGHIKRTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           VRLDIRR G IK  D + GN+T+VKV+KNK+A PF+Q EFDI+YGEG+S+ GELIDL
Sbjct: 181 VRLDIRRTGQIKKGDDVIGNETKVKVIKNKVAPPFRQAEFDILYGEGVSWEGELIDL 237


>gi|58415638|emb|CAH57233.1| recA protein [Vibrio rumoiensis]
          Length = 247

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 169/249 (67%), Positives = 211/249 (84%), Gaps = 2/249 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMKLGDNRTM--DVETISTGSLALDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGV++ +LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQRVGKTCAFIDAEHALDPIYAQKLGVNINDLLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FGSPETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGSPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238

Query: 271 MYGEGISFF 279
           +YG+G +  
Sbjct: 239 LYGKGFNRE 247


>gi|298955415|gb|ADI99992.1| RecA [Bacillus megaterium]
          Length = 241

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 152/241 (63%), Positives = 196/241 (81%)

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           + GG  AF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI + LVRSGAVDIIV+D
Sbjct: 1   QQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVD 60

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I++SK I +FI Q+R K+GVMFG
Sbjct: 61  SVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAINKSKTIAIFIKQIREKVGVMFG 120

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETT GG ALKFYSSVRL++RR   +K  + I GN+TR+KVVKNK+A P++  E DIMY
Sbjct: 121 NPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIVGNKTRIKVVKNKVAPPYRAAEVDIMY 180

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           GEGIS  GE++D+  +  IV KSG+W+S+  +RLGQGREN+K FL+EN +I + I   +R
Sbjct: 181 GEGISKEGEILDIASELDIVQKSGSWYSYNDERLGQGRENAKQFLKENTDIRQEIAGQVR 240

Query: 333 Q 333
           +
Sbjct: 241 E 241


>gi|60679097|gb|AAX33838.1| RecA [Aeromonas molluscorum]
 gi|289623232|emb|CAX51153.1| recA protein [Aeromonas molluscorum]
          Length = 239

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 179/239 (74%), Positives = 208/239 (87%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSL LD+ALGIGG P GR+VEIYGPESSGKTTL L  IA++QK G TCAFVDA
Sbjct: 1   DIEAISTGSLSLDVALGIGGLPCGRVVEIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEI
Sbjct: 61  EHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 121 EGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           KFY+SVRLDIRR+G+IK+ D + GN+TRVKVVKNK+A PFKQ EF I YG GIS  GEL
Sbjct: 181 KFYASVRLDIRRIGAIKEGDEVVGNETRVKVVKNKVAPPFKQAEFQIFYGVGISKEGEL 239


>gi|6225927|sp|O86411|RECA_NEISI RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|3421314|emb|CAA11603.1| recA [Neisseria sicca]
          Length = 237

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 171/237 (72%), Positives = 205/237 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLD+ALG+GG P+GR+V+I+GPESSGKTTL L  IAQ QK GG CAF+DAEHA D
Sbjct: 1   STGSLGLDLALGVGGLPRGRVVKIFGPESSGKTTLCLEAIAQCQKNGGICAFIDAEHAFD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLG+ ++ L +SQPDTGEQALEI D LVRSG VD++V+DSVAAL P+AEIEG+MG
Sbjct: 61  PVYARKLGIKVEELYLSQPDTGEQALEICDTLVRSGGVDMVVVDSVAALVPKAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRKLT  I R+  ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+S
Sbjct: 121 DSHVGLQARLMSQALRKLTGHIKRTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           VRLDIRR G IK  D + GN+T+VKV+KNK+A PF+Q EFDI+YGEG+S+ GELIDL
Sbjct: 181 VRLDIRRTGQIKKGDDVIGNETKVKVIKNKVAPPFRQAEFDILYGEGVSWEGELIDL 237


>gi|30266989|gb|AAP21603.1| recombinase A [Pectobacterium carotovorum subsp. odoriferum]
          Length = 245

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 170/247 (68%), Positives = 210/247 (85%), Gaps = 2/247 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKI
Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAE 238

Query: 268 FDIMYGE 274
           F IM+G+
Sbjct: 239 FQIMFGK 245


>gi|315021921|gb|ADT70828.1| recombinase A [Pectobacterium carotovorum]
          Length = 244

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 171/246 (69%), Positives = 209/246 (84%), Gaps = 2/246 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKI
Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAE 238

Query: 268 FDIMYG 273
           F IMYG
Sbjct: 239 FQIMYG 244


>gi|289623214|emb|CAX51144.1| recA protein [Aeromonas popoffii]
 gi|289623216|emb|CAX51145.1| recA protein [Aeromonas bestiarum]
 gi|289623218|emb|CAX51146.1| recA protein [Aeromonas salmonicida]
 gi|289623236|emb|CAX51155.1| recA protein [Aeromonas sobria]
          Length = 239

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 178/239 (74%), Positives = 207/239 (86%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L  IA++QK G  CAF+DA
Sbjct: 1   DIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKVCAFIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEI
Sbjct: 61  EHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 121 EGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           KFY+SVRLDIRR+G+IK+ D + GN+TRVKVVKNK+A PFKQ EF I YG GIS  GEL
Sbjct: 181 KFYASVRLDIRRIGAIKEGDEVVGNETRVKVVKNKVAPPFKQAEFQIFYGVGISKEGEL 239


>gi|30691917|gb|AAP33456.1| recombinase A [Pectobacterium atrosepticum]
          Length = 254

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 171/248 (68%), Positives = 210/248 (84%), Gaps = 2/248 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+ M+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGSSMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEF 238

Query: 269 DIMYGEGI 276
            IMYGEG+
Sbjct: 239 QIMYGEGL 246


>gi|52630777|gb|AAU84856.1| RecA [Pandoraea apista]
          Length = 248

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 181/246 (73%), Positives = 216/246 (87%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I+VVS+GSLGLDIALG+GG P+GR++EIYGPESSGKTTL L  +A+ QK GGTCAF+DA
Sbjct: 3   DIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTTLTLQVVAEMQKIGGTCAFIDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD  YA KLGV + +LLISQPDTGEQALEI D LVRSG++D+I+IDSVAAL P+AEI
Sbjct: 63  EHALDVGYASKLGVSVPDLLISQPDTGEQALEIADALVRSGSIDLIIIDSVAALVPKAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+SLPG+QARLMSQALRKLT +I R+   ++FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 123 EGEMGDSLPGLQARLMSQALRKLTGTIKRTNSTVIFINQIRMKIGVMFGNPETTTGGNAL 182

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YG+GIS  GE+I
Sbjct: 183 KFYSSVRLDIRRIGSIKKGDEVVGNETRVKVVKNKVSPPFREAIFDILYGQGISREGEII 242

Query: 284 DLGVKA 289
           DLGV A
Sbjct: 243 DLGVNA 248


>gi|169248070|gb|ACA51818.1| RecA [Aliivibrio wodanis]
 gi|169248072|gb|ACA51819.1| RecA [Aliivibrio wodanis]
          Length = 244

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 176/244 (72%), Positives = 210/244 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IAQ+QK G TCAF+DAEHALD
Sbjct: 1   STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEAIAQAQKAGKTCAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYA+KLGVD+  LL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG
Sbjct: 61  PIYAQKLGVDIDQLLCSQPDTGEQALEIVDALARSGAVDVIVVDSVAALTPKAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+S
Sbjct: 121 DSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           VRLDIRR G++K+ D + GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK
Sbjct: 181 VRLDIRRTGAVKEGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVK 240

Query: 289 ASIV 292
             +V
Sbjct: 241 HKLV 244


>gi|87122502|ref|ZP_01078382.1| recombinase A [Marinomonas sp. MED121]
 gi|86162295|gb|EAQ63580.1| recombinase A [Marinomonas sp. MED121]
          Length = 273

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 175/279 (62%), Positives = 219/279 (78%), Gaps = 7/279 (2%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           +  IA++QK G TCAF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEI DMLVRS 
Sbjct: 1   MSVIAEAQKQGKTCAFIDAEHALDPSYAEKLGVNIADLLISQPDTGEQALEIVDMLVRSN 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           +VD++++DSVAAL P++EIEG+MG S  G+QARL+SQA+RKLT SI  + C++VFINQ+R
Sbjct: 61  SVDVVIVDSVAALVPKSEIEGEMGSSSVGVQARLLSQAMRKLTGSIKNANCLVVFINQIR 120

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GS+K  D + GN+TRVKVVKNK+A PFK
Sbjct: 121 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKQGDEVVGNETRVKVVKNKIAPPFK 180

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           Q EF IMYG GI   GE+IDLGVK   VDKSGAW+++ G ++GQG+ N+  FL +N EIA
Sbjct: 181 QTEFQIMYGAGIYRMGEIIDLGVKQGFVDKSGAWYAYNGSKIGQGKANAAQFLSDNPEIA 240

Query: 325 ENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
             IE  +R+        LL +     KDDA +++ D ++
Sbjct: 241 TEIEGKIREQ-------LLPKDLPAEKDDAKEEEGDLLD 272


>gi|1890214|emb|CAA72503.1| recA [Neisseria lactamica]
 gi|1890216|emb|CAA72504.1| recA [Neisseria lactamica]
 gi|1890218|emb|CAA72499.1| recA [Neisseria polysaccharea]
 gi|1890220|emb|CAA72500.1| recA [Neisseria polysaccharea]
 gi|1890222|emb|CAA72501.1| recA [Neisseria polysaccharea]
 gi|1890224|emb|CAA72502.1| recA [Neisseria polysaccharea]
 gi|3421232|emb|CAA11598.1| recA [Neisseria meningitidis]
 gi|3421234|emb|CAA11599.1| recA [Neisseria meningitidis]
          Length = 237

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 175/237 (73%), Positives = 206/237 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKTTL L  +AQ QK GG CAFVDAEHA D
Sbjct: 1   STGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGV ++ L +SQPDTGEQALEI D LVRSG +D++V+DSVAAL P+AEIEGDMG
Sbjct: 61  PVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRKLT  I ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSS
Sbjct: 121 DSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           VRLDIRR GSIK  + + GN+TRVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+
Sbjct: 181 VRLDIRRTGSIKKGEEVLGNETRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDI 237


>gi|30266987|gb|AAP21602.1| recombinase A [Pectobacterium betavasculorum]
          Length = 245

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 171/246 (69%), Positives = 209/246 (84%), Gaps = 2/246 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKI
Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAE 238

Query: 268 FDIMYG 273
           F IMYG
Sbjct: 239 FQIMYG 244


>gi|117675787|emb|CAL69164.1| recombinase A [Frigoribacterium faeni]
          Length = 238

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 162/236 (68%), Positives = 195/236 (82%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DMLV
Sbjct: 1   TLTLHAIANAQRNGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG++D++VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  +S++   ++FIN
Sbjct: 61  RSGSIDLVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLSQTGTTMIFIN 120

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA 
Sbjct: 121 QLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGSDAVGNRTRVKVVKNKMAP 180

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317
           PFKQ EFDI+YG GIS  G LID GV+  IV KSGAW++++G +LGQG+ENS+ FL
Sbjct: 181 PFKQAEFDILYGVGISREGSLIDFGVEHGIVRKSGAWYTYEGDQLGQGKENSRNFL 236


>gi|304564551|gb|ADM45139.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564553|gb|ADM45140.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564563|gb|ADM45145.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 254

 Score =  253 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 170/256 (66%), Positives = 214/256 (83%), Gaps = 2/256 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK 
Sbjct: 1   LGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKM 58

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSV
Sbjct: 59  GGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSV 118

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+P
Sbjct: 119 AALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNP 178

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           ETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGE
Sbjct: 179 ETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGE 238

Query: 275 GISFFGELIDLGVKAS 290
           GIS  G ++D+G    
Sbjct: 239 GISREGSILDIGASID 254


>gi|89145042|emb|CAJ57529.1| recombinase A [Microbacterium phyllosphaerae]
          Length = 238

 Score =  253 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 160/236 (67%), Positives = 193/236 (81%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL LH IA +Q+ GG  AF+DAEHALD  YA KLGVD+  LL+SQPDTGEQALEI DMLV
Sbjct: 1   TLTLHAIANAQRAGGIAAFIDAEHALDPDYAAKLGVDIDALLVSQPDTGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  ++++   ++FIN
Sbjct: 61  RSGAIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIFIN 120

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+R KIGV FGSPETT GG ALKFY+SVR+DIRR+ ++KD     GN+TRVKVVKNKMA 
Sbjct: 121 QLREKIGVFFGSPETTAGGKALKFYASVRMDIRRIETLKDGTDAVGNRTRVKVVKNKMAP 180

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317
           PFKQ EFDI+YG GIS  G LID GV+  IV KSG+W+++ G +LGQG+EN++ FL
Sbjct: 181 PFKQAEFDILYGVGISREGSLIDFGVEHGIVKKSGSWYTYDGDQLGQGKENARTFL 236


>gi|179185228|gb|ACB78175.1| RecA [Vibrio comitans]
          Length = 251

 Score =  253 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 170/249 (68%), Positives = 210/249 (84%), Gaps = 2/249 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +Q+ 
Sbjct: 5   LGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQRE 62

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           G TCAF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSGA+D++V+DSV
Sbjct: 63  GKTCAFIDAEHALDPIYAQKLGVNIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSV 122

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+P
Sbjct: 123 AALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNP 182

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           ETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  IMYG+
Sbjct: 183 ETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQIMYGQ 242

Query: 275 GISFFGELI 283
           G +  GELI
Sbjct: 243 GFNREGELI 251


>gi|6225926|sp|O86403|RECA_NEIPE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|6225928|sp|O86414|RECA_NEISU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|3421278|emb|CAA11607.1| recA [Neisseria perflava]
 gi|3421316|emb|CAA11605.1| recA [Neisseria subflava]
          Length = 237

 Score =  253 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 173/237 (72%), Positives = 205/237 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLG+D+ALG+GG P+GR+VEI+GPESSGKTTL L  IAQ QK GG CAF+DAEHA D
Sbjct: 1   STGSLGVDLALGVGGLPRGRVVEIFGPESSGKTTLCLEAIAQCQKNGGICAFIDAEHAFD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYARKLGV ++ L +SQPDTGEQALEI D LVRSG +D++V+DSVAAL P+AEIEG+MG
Sbjct: 61  PIYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRKLT  I R+  ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+S
Sbjct: 121 DSHVGLQARLMSQALRKLTGHIKRTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           VRLDIRR G IK  D + GN+T+VKV+KNK+A PF+Q EFDI+YGEGIS+ GELIDL
Sbjct: 181 VRLDIRRTGQIKKGDDVIGNETKVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDL 237


>gi|52630829|gb|AAU84882.1| RecA [Burkholderia ubonensis]
          Length = 248

 Score =  253 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 186/248 (75%), Positives = 220/248 (88%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AE
Sbjct: 61  AEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           IEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNA
Sbjct: 121 IEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNA 180

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LKFYSSVRLDIR++GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+
Sbjct: 181 LKFYSSVRLDIRQIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEI 240

Query: 283 IDLGVKAS 290
           IDLGV+A 
Sbjct: 241 IDLGVQAK 248


>gi|52630787|gb|AAU84861.1| RecA [Burkholderia caribensis]
          Length = 247

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 183/247 (74%), Positives = 220/247 (89%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DA
Sbjct: 1   DIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKIGGTAAFIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD  YA+KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEI
Sbjct: 61  EHALDIQYAQKLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 121 EGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+I
Sbjct: 181 KFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRETIFDILYGEGISRQGEII 240

Query: 284 DLGVKAS 290
           DLGV+A 
Sbjct: 241 DLGVQAK 247


>gi|304564797|gb|ADM45262.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564803|gb|ADM45265.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564805|gb|ADM45266.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 252

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 170/252 (67%), Positives = 214/252 (84%), Gaps = 2/252 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK 
Sbjct: 1   LGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKM 58

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSV
Sbjct: 59  GGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSV 118

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+P
Sbjct: 119 AALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNP 178

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           ETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGE
Sbjct: 179 ETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGE 238

Query: 275 GISFFGELIDLG 286
           GIS  G ++D+G
Sbjct: 239 GISREGSILDIG 250


>gi|304564691|gb|ADM45209.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 250

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 170/252 (67%), Positives = 214/252 (84%), Gaps = 2/252 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK 
Sbjct: 1   LGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKM 58

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSV
Sbjct: 59  GGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSV 118

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+P
Sbjct: 119 AALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNP 178

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           ETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGE
Sbjct: 179 ETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGE 238

Query: 275 GISFFGELIDLG 286
           GIS  G ++D+G
Sbjct: 239 GISREGSILDIG 250


>gi|52630825|gb|AAU84880.1| RecA [Burkholderia sp. R8349]
          Length = 246

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 184/246 (74%), Positives = 219/246 (89%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHA
Sbjct: 1   VVSTGSLGLDIALGVGGVPRGRVVEIYGPESSGKTTLTLQVIAEMQKIGGTAAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+
Sbjct: 61  LDIQYAGKLGVNVNDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY
Sbjct: 121 MGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFY 180

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
           +SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLG
Sbjct: 181 ASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLG 240

Query: 287 VKASIV 292
           V+A IV
Sbjct: 241 VQAKIV 246


>gi|304564449|gb|ADM45088.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 252

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 171/252 (67%), Positives = 214/252 (84%), Gaps = 2/252 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK 
Sbjct: 1   LGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKM 58

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSV
Sbjct: 59  GGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSV 118

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+P
Sbjct: 119 AALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNP 178

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           ETT GG ALKFY+++RLD+R+V +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGE
Sbjct: 179 ETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGE 238

Query: 275 GISFFGELIDLG 286
           GIS  G ++D+G
Sbjct: 239 GISREGSILDIG 250


>gi|304564527|gb|ADM45127.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 254

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 170/256 (66%), Positives = 214/256 (83%), Gaps = 2/256 (0%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
           G    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK G
Sbjct: 1   GDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMG 58

Query: 96  GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
           GT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVA
Sbjct: 59  GTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVA 118

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
           AL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PE
Sbjct: 119 ALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPE 178

Query: 216 TTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275
           TT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEG
Sbjct: 179 TTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEG 238

Query: 276 ISFFGELIDLGVKASI 291
           IS  G ++D+G    I
Sbjct: 239 ISREGSILDIGASIDI 254


>gi|304564561|gb|ADM45144.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564605|gb|ADM45166.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564607|gb|ADM45167.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564609|gb|ADM45168.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564615|gb|ADM45171.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 253

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 170/252 (67%), Positives = 214/252 (84%), Gaps = 2/252 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK 
Sbjct: 1   LGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKM 58

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSV
Sbjct: 59  GGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSV 118

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+P
Sbjct: 119 AALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNP 178

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           ETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGE
Sbjct: 179 ETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGE 238

Query: 275 GISFFGELIDLG 286
           GIS  G ++D+G
Sbjct: 239 GISREGSILDIG 250


>gi|290795137|gb|ADD64583.1| RecA recombinase [Vibrio splendidus]
          Length = 242

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 170/243 (69%), Positives = 207/243 (85%), Gaps = 2/243 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D
Sbjct: 59  IAAAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAID 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAE 238

Query: 268 FDI 270
             I
Sbjct: 239 TQI 241


>gi|304564667|gb|ADM45197.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 253

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 169/252 (67%), Positives = 213/252 (84%), Gaps = 2/252 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK 
Sbjct: 1   LGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKM 58

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GGT AF+DAEHALD +YA+ LG ++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSV
Sbjct: 59  GGTGAFIDAEHALDPVYAKNLGANIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSV 118

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+P
Sbjct: 119 AALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNP 178

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           ETT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGE
Sbjct: 179 ETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGE 238

Query: 275 GISFFGELIDLG 286
           GIS  G ++D+G
Sbjct: 239 GISREGSILDIG 250


>gi|3425915|emb|CAA11608.1| recA [Neisseria elongata]
 gi|3425919|emb|CAA11610.1| recA [Neisseria elongata]
          Length = 237

 Score =  252 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 176/237 (74%), Positives = 208/237 (87%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLG+D+ALG+GG P+GRIVEI+GPESSGKTTL L TIAQ QK GG CAF+DAE+A D
Sbjct: 1   STGSLGVDLALGVGGLPRGRIVEIFGPESSGKTTLCLETIAQCQKNGGVCAFIDAENAFD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYARKLGV ++ L++SQPDTGEQALEI DMLVRSG VD++VIDSVAAL P+AEIEGDMG
Sbjct: 61  PIYARKLGVKVEELMVSQPDTGEQALEICDMLVRSGGVDMVVIDSVAALVPKAEIEGDMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRKLT  I ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+S
Sbjct: 121 DSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           VRLDIRR G IK  D + GN+T+VKV+KNK+A PF+Q EFDI+YGEG+S+ GELIDL
Sbjct: 181 VRLDIRRTGQIKKGDDVIGNETKVKVIKNKVAPPFRQAEFDILYGEGVSWEGELIDL 237


>gi|179185204|gb|ACB78174.1| RecA [Vibrio breoganii]
          Length = 247

 Score =  252 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 170/249 (68%), Positives = 210/249 (84%), Gaps = 2/249 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +Q+ 
Sbjct: 1   LGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQRE 58

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           G TCAF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSGA+D++V+DSV
Sbjct: 59  GKTCAFIDAEHALDPIYAQKLGVNIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSV 118

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+P
Sbjct: 119 AALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNP 178

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           ETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  IMYG+
Sbjct: 179 ETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQIMYGQ 238

Query: 275 GISFFGELI 283
           G +  GELI
Sbjct: 239 GFNREGELI 247


>gi|6225925|sp|O86382|RECA_NEIEG RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|3425917|emb|CAA11609.1| recA [Neisseria elongata]
          Length = 237

 Score =  252 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 176/237 (74%), Positives = 207/237 (87%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKTTL L TIAQ QK GG CAF+DAE+A D
Sbjct: 1   STGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLETIAQCQKNGGVCAFIDAENAFD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYARKLGV ++ L++SQPDTGEQALEI DMLVRSG VD++VIDSVAAL P+AEIEGDMG
Sbjct: 61  PIYARKLGVKVEELMVSQPDTGEQALEICDMLVRSGGVDMVVIDSVAALVPKAEIEGDMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRKLT  I ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+S
Sbjct: 121 DSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           VRLDIRR   IK  D + GN+T+VKV+KNK+A PF+Q EFDI+YGEG+S+ GELIDL
Sbjct: 181 VRLDIRRGLQIKKGDDVIGNETKVKVIKNKVAPPFRQAEFDILYGEGVSWEGELIDL 237


>gi|3421274|emb|CAA11593.1| recA [Neisseria perflava]
          Length = 237

 Score =  252 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 174/237 (73%), Positives = 206/237 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKTTL L  +AQ QK GG CAFVDAEHA D
Sbjct: 1   STGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGV ++ L +SQPDTGEQALEI D LVRSG ++++V+DSVAAL P+AEIEGDMG
Sbjct: 61  PVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGINMVVVDSVAALVPKAEIEGDMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRKLT  I ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSS
Sbjct: 121 DSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           VRLDIRR GSIK  + + GN+TRVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+
Sbjct: 181 VRLDIRRTGSIKKGEEVLGNETRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDI 237


>gi|30691939|gb|AAP33466.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum]
          Length = 244

 Score =  252 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 169/245 (68%), Positives = 208/245 (84%), Gaps = 2/245 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 2   KGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 60  ASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 120 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF
Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEF 239

Query: 269 DIMYG 273
            IM+G
Sbjct: 240 QIMFG 244


>gi|30691927|gb|AAP33460.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum]
 gi|30691945|gb|AAP33469.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum]
          Length = 246

 Score =  252 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 171/247 (69%), Positives = 209/247 (84%), Gaps = 2/247 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 2   KGFIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 60  ASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 120 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF
Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEF 239

Query: 269 DIMYGEG 275
            IM+GEG
Sbjct: 240 QIMFGEG 246


>gi|30691929|gb|AAP33461.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum]
          Length = 246

 Score =  252 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 171/247 (69%), Positives = 209/247 (84%), Gaps = 2/247 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 2   KGFIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 60  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 120 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF
Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEF 239

Query: 269 DIMYGEG 275
            IM+GEG
Sbjct: 240 QIMFGEG 246


>gi|223635949|emb|CAQ03776.1| recombination-repair protein [Enterovibrio norvegicus]
          Length = 253

 Score =  252 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 184/251 (73%), Positives = 216/251 (86%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
            S+      IE VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  +A++QK G
Sbjct: 3   ASRRDRTMDIETVSTGSLSLDIALGAGGLPFGRIVEIYGPESSGKTTLTLQVVAEAQKAG 62

Query: 96  GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
            TCAF+DAEHALD +YARKLGVD+ NLL+SQPDTGEQALEI D L RSGAVD+I+IDSVA
Sbjct: 63  KTCAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIADALTRSGAVDVIIIDSVA 122

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
           ALTP+AEIEG+MG+S  G+QAR++SQA+RKLT++I  S  +++FINQ+RMKIGVMFG+PE
Sbjct: 123 ALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIGVMFGNPE 182

Query: 216 TTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275
           TTTGGNALKFY+SVRLDIRR+GSIK+ D I GN TRVKVVKNK+A+PFKQ EF IMYGEG
Sbjct: 183 TTTGGNALKFYASVRLDIRRIGSIKEGDEIVGNDTRVKVVKNKIAAPFKQAEFQIMYGEG 242

Query: 276 ISFFGELIDLG 286
           I+ +GELIDLG
Sbjct: 243 INLYGELIDLG 253


>gi|56181893|gb|AAV83927.1| RecA [Burkholderia cepacia]
          Length = 240

 Score =  252 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 177/240 (73%), Positives = 211/240 (87%), Gaps = 1/240 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++
Sbjct: 60  VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK
Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++ 
Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239


>gi|304415670|gb|ADM30941.1| recombinant DNA repair protein [Vibrio sp. MSSRF60]
 gi|304415672|gb|ADM30942.1| recombinant DNA repair protein [Vibrio sp. MSSRF64]
          Length = 245

 Score =  252 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 175/245 (71%), Positives = 211/245 (86%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           L LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA
Sbjct: 1   LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQRVGKTCAFIDAEHALDPIYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           RKLGV++  LL+SQPDTGEQALEI D L RSGAVD++V+DSVAALTP+AEIEG+MG+S  
Sbjct: 61  RKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMVVDSVAALTPKAEIEGEMGDSHM 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD
Sbjct: 121 GLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 180

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           IRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ +  I+YG+G +  GELIDLGVK  +V
Sbjct: 181 IRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQADTQILYGQGFNREGELIDLGVKHKLV 240

Query: 293 DKSGA 297
           +KSGA
Sbjct: 241 EKSGA 245


>gi|179185172|gb|ACB78173.1| RecA [Vibrio breoganii]
          Length = 247

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 169/249 (67%), Positives = 210/249 (84%), Gaps = 2/249 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +Q+ 
Sbjct: 1   LGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQRE 58

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           G TCAF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSGA+D++V+DSV
Sbjct: 59  GKTCAFIDAEHALDPIYAQKLGVNIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSV 118

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+P
Sbjct: 119 AALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNP 178

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           ETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR++VVKNK+A+PFKQ E  IMYG+
Sbjct: 179 ETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIRVVKNKIAAPFKQAETQIMYGQ 238

Query: 275 GISFFGELI 283
           G +  GELI
Sbjct: 239 GFNREGELI 247


>gi|3421276|emb|CAA11606.1| recA [Neisseria mucosa]
          Length = 237

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 172/237 (72%), Positives = 203/237 (85%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLG+D+ALG+GG P+GR+VEI GPESSG TTL L  IAQ QK GG CAF+DAEHA D
Sbjct: 1   STGSLGVDLALGVGGLPRGRVVEILGPESSGNTTLCLEAIAQCQKNGGICAFIDAEHAFD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYARKLGV ++ L +SQPDTGEQALEI D LVRSG +D++V+DSVAAL P+AEIEG+MG
Sbjct: 61  PIYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRKLT  I R+  ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+S
Sbjct: 121 DSHVGLQARLMSQALRKLTGHIKRTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           VRLDIRR G IK  D + GN+T+VKV+KNK+A PF+Q EFDI+YGEGIS+ GELIDL
Sbjct: 181 VRLDIRRTGQIKKGDDVIGNETKVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDL 237


>gi|29421226|gb|AAO62572.1| recombinase A [Pantoea agglomerans]
          Length = 243

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 171/245 (69%), Positives = 210/245 (85%), Gaps = 2/245 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I
Sbjct: 59  SAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVI 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           ++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGV
Sbjct: 119 IVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D++ G++TRVKVVKNK+A+PFKQ EF 
Sbjct: 179 MFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSETRVKVVKNKIAAPFKQAEFQ 238

Query: 270 IMYGE 274
           IMYGE
Sbjct: 239 IMYGE 243


>gi|25808131|gb|AAN74130.1| RecA [Helicobacter pylori]
          Length = 252

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 166/252 (65%), Positives = 208/252 (82%), Gaps = 1/252 (0%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+
Sbjct: 1   VEKIDSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFI 60

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           DAEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+A
Sbjct: 61  DAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKA 120

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-GVMFGSPETTTGG 220
           EI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKI  + +GSPETTTGG
Sbjct: 121 EIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGG 180

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           NALKFY+SVR+DIRR+ ++K  +   GN+ + KVVKNK+A PF++ EFDIM+GEGIS  G
Sbjct: 181 NALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEG 240

Query: 281 ELIDLGVKASIV 292
           E+ID GVK  IV
Sbjct: 241 EIIDYGVKLDIV 252


>gi|167598959|gb|ABZ88504.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598961|gb|ABZ88505.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598963|gb|ABZ88506.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598965|gb|ABZ88507.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598967|gb|ABZ88508.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598969|gb|ABZ88509.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598971|gb|ABZ88510.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598973|gb|ABZ88511.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598975|gb|ABZ88512.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598977|gb|ABZ88513.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598979|gb|ABZ88514.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598981|gb|ABZ88515.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598983|gb|ABZ88516.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598985|gb|ABZ88517.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598987|gb|ABZ88518.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598989|gb|ABZ88519.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598991|gb|ABZ88520.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598993|gb|ABZ88521.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598995|gb|ABZ88522.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598997|gb|ABZ88523.1| recombinase A [Flavobacterium psychrophilum]
 gi|167598999|gb|ABZ88524.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599001|gb|ABZ88525.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599003|gb|ABZ88526.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599005|gb|ABZ88527.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599007|gb|ABZ88528.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599009|gb|ABZ88529.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599011|gb|ABZ88530.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599013|gb|ABZ88531.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599015|gb|ABZ88532.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599017|gb|ABZ88533.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599019|gb|ABZ88534.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599021|gb|ABZ88535.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599023|gb|ABZ88536.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599025|gb|ABZ88537.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599027|gb|ABZ88538.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599029|gb|ABZ88539.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599031|gb|ABZ88540.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599033|gb|ABZ88541.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599035|gb|ABZ88542.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599037|gb|ABZ88543.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599039|gb|ABZ88544.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599041|gb|ABZ88545.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599043|gb|ABZ88546.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599045|gb|ABZ88547.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599047|gb|ABZ88548.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599049|gb|ABZ88549.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599051|gb|ABZ88550.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599053|gb|ABZ88551.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599055|gb|ABZ88552.1| recombinase A [Flavobacterium psychrophilum]
 gi|167599057|gb|ABZ88553.1| recombinase A [Flavobacterium psychrophilum]
          Length = 252

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 174/252 (69%), Positives = 217/252 (86%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +SSGSLGLD+ALG+GG+P+GR++EIYGPESSGKTTL LH IA++QK GG  AF+DA
Sbjct: 1   EVETISSGSLGLDLALGVGGYPRGRVIEIYGPESSGKTTLTLHAIAEAQKAGGIAAFIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHA D  YA KLGVD++NL+ISQPD GEQALEI + L+RSGA+DI+VIDSVAALTP++EI
Sbjct: 61  EHAFDRSYAEKLGVDIENLIISQPDNGEQALEIAENLIRSGAIDIVVIDSVAALTPKSEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+ ARLMSQALRKLT +IS++KC + FINQ+R KIGVMFG+PETTTGGNAL
Sbjct: 121 EGEMGDSKMGLHARLMSQALRKLTGTISKTKCTVFFINQLREKIGVMFGNPETTTGGNAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+SVRLDIRR   IKD +++ GN+T+VKVVKNK+A PFK  EFDIMYGEG+S  GE++
Sbjct: 181 KFYASVRLDIRRSTQIKDGENVLGNRTKVKVVKNKVAPPFKTAEFDIMYGEGVSKTGEIL 240

Query: 284 DLGVKASIVDKS 295
           DL V+  ++ K+
Sbjct: 241 DLAVEFEVIRKA 252


>gi|315021925|gb|ADT70830.1| recombinase A [Pectobacterium carotovorum]
          Length = 243

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 170/245 (69%), Positives = 208/245 (84%), Gaps = 2/245 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEF 238

Query: 269 DIMYG 273
            IMYG
Sbjct: 239 QIMYG 243


>gi|169248054|gb|ACA51810.1| RecA [Aliivibrio fischeri]
          Length = 244

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 173/244 (70%), Positives = 210/244 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD
Sbjct: 1   STGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD++VIDSVAALTP+AEIEG+MG
Sbjct: 61  PVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMVIDSVAALTPKAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+S
Sbjct: 121 DSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           VRLDIRR G++KD D + GN+TR+KVVKNK+A+PFKQ E  IMYG+G +  GELIDLGVK
Sbjct: 181 VRLDIRRTGAVKDGDEVVGNETRIKVVKNKIAAPFKQAETQIMYGQGFNREGELIDLGVK 240

Query: 289 ASIV 292
             +V
Sbjct: 241 HKLV 244


>gi|30691915|gb|AAP33455.1| recombinase A [Pectobacterium atrosepticum]
          Length = 245

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 172/247 (69%), Positives = 209/247 (84%), Gaps = 2/247 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGFIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEF 238

Query: 269 DIMYGEG 275
            IMYGEG
Sbjct: 239 QIMYGEG 245


>gi|291246084|gb|ADD85170.1| RecA [Borrelia duttonii]
          Length = 286

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 155/269 (57%), Positives = 212/269 (78%), Gaps = 2/269 (0%)

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEI+GPESSGKTTL L  IA+ QKTGG  AF+DAEHALD +YAR LGV++  L +SQ
Sbjct: 1   GRVVEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQ 60

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQAL+I + L+RSG VD+IV+DSVAALTP+AEI+G+MG++  G+QARLMS+ALRK+
Sbjct: 61  PDTGEQALDIAEYLIRSGGVDLIVVDSVAALTPQAEIDGEMGDTQIGLQARLMSKALRKI 120

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI--KDKDS 244
           T+ +S+S   ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V  +     D+
Sbjct: 121 TAILSKSNTCIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKVEQVIGSSSDN 180

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + GN+ RVKVVKNK+A PF++ E  + +G+GIS    ++D  +K ++V KSG+W++    
Sbjct: 181 VIGNKIRVKVVKNKVAPPFRKAELIVYFGKGISREASILDAAIKYNLVQKSGSWYAMGDD 240

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQ 333
            LGQGREN   +L +   +A  +E+ LR+
Sbjct: 241 NLGQGRENVIEYLFKEKALANELENKLRK 269


>gi|3425921|emb|CAA11611.1| recA [Neisseria elongata]
          Length = 237

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 175/237 (73%), Positives = 208/237 (87%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLG+D+ALG+GG P+GRIVEI+GPESSGKTTL L TIAQ QK GG CAF+DAE+A D
Sbjct: 1   STGSLGVDLALGVGGLPRGRIVEIFGPESSGKTTLCLETIAQCQKNGGVCAFIDAENAFD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYARKLGV ++ L++SQPDTGEQALEI DMLVRSG VD++VIDSVAAL P+AEIEGDMG
Sbjct: 61  PIYARKLGVKVEELMVSQPDTGEQALEICDMLVRSGGVDMVVIDSVAALVPKAEIEGDMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRKLT  I ++  ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+S
Sbjct: 121 DSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           VRLDIRR G IK  D + GN+T+VKV+KNK+A PF+Q EFDI+YGEG+++ GELIDL
Sbjct: 181 VRLDIRRTGQIKKGDDVIGNETKVKVIKNKVAPPFRQAEFDILYGEGVTWEGELIDL 237


>gi|304564539|gb|ADM45133.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564541|gb|ADM45134.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564729|gb|ADM45228.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 251

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 168/247 (68%), Positives = 211/247 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DA
Sbjct: 5   NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDA 64

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI
Sbjct: 65  EHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEI 124

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           +G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PETT GG AL
Sbjct: 125 DGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRAL 184

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++
Sbjct: 185 KFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSIL 244

Query: 284 DLGVKAS 290
           D+G    
Sbjct: 245 DIGASID 251


>gi|30142059|gb|AAP13812.1| recombinase A subunit [Brenneria quercina]
          Length = 240

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 169/242 (69%), Positives = 207/242 (85%), Gaps = 2/242 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   S+   +E++S+GSL LDIALG+GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRLGEDRSM--DVEIISTGSLSLDIALGVGGLPMGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQRKGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIG
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSSTLLIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR+G+IKD D + G++TRVKVVKNK+A+PFKQ EF
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRIGAIKDGDEVVGSETRVKVVKNKVAAPFKQAEF 238

Query: 269 DI 270
             
Sbjct: 239 QF 240


>gi|304564529|gb|ADM45128.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 250

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 168/247 (68%), Positives = 211/247 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DA
Sbjct: 4   NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDA 63

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI
Sbjct: 64  EHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEI 123

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           +G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PETT GG AL
Sbjct: 124 DGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRAL 183

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++
Sbjct: 184 KFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSIL 243

Query: 284 DLGVKAS 290
           D+G    
Sbjct: 244 DIGASID 250


>gi|30691941|gb|AAP33467.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum]
          Length = 244

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 172/246 (69%), Positives = 208/246 (84%), Gaps = 2/246 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGFIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKI
Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD + + G++TRVKVVKNK+A+PFKQ E
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVGSETRVKVVKNKVAAPFKQAE 238

Query: 268 FDIMYG 273
           F IMYG
Sbjct: 239 FKIMYG 244


>gi|304564569|gb|ADM45148.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 246

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 168/243 (69%), Positives = 211/243 (86%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DA
Sbjct: 2   NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI
Sbjct: 62  EHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEI 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           +G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PETT GG AL
Sbjct: 122 DGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRAL 181

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++
Sbjct: 182 KFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSIL 241

Query: 284 DLG 286
           D+G
Sbjct: 242 DIG 244


>gi|304564735|gb|ADM45231.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 249

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 168/243 (69%), Positives = 211/243 (86%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DA
Sbjct: 5   NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDA 64

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI
Sbjct: 65  EHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEI 124

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           +G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PETT GG AL
Sbjct: 125 DGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRAL 184

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++
Sbjct: 185 KFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSIL 244

Query: 284 DLG 286
           D+G
Sbjct: 245 DIG 247


>gi|304564547|gb|ADM45137.1| recombinase A [Thermoanaerobacter uzonensis]
 gi|304564565|gb|ADM45146.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 250

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 168/243 (69%), Positives = 211/243 (86%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DA
Sbjct: 5   NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDA 64

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI
Sbjct: 65  EHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEI 124

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           +G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PETT GG AL
Sbjct: 125 DGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRAL 184

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS  G ++
Sbjct: 185 KFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSIL 244

Query: 284 DLG 286
           D+G
Sbjct: 245 DIG 247


>gi|284156789|gb|ACM45454.2| RecA [Aeromonas fluvialis]
          Length = 239

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 180/239 (75%), Positives = 208/239 (87%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L  IA++QK G TCAFVDA
Sbjct: 1   DIEAISNGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEI
Sbjct: 61  EHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 121 EGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           KFY+SVRLDIRR+G+IK+ D + GN+TRVKVVKNK+A PFKQ EF I YG GIS  GEL
Sbjct: 181 KFYASVRLDIRRIGAIKEGDEVVGNETRVKVVKNKVAPPFKQAEFQIFYGAGISKEGEL 239


>gi|304564555|gb|ADM45141.1| recombinase A [Thermoanaerobacter uzonensis]
          Length = 252

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 169/251 (67%), Positives = 213/251 (84%), Gaps = 2/251 (0%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
           G    +   +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK G
Sbjct: 1   GDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMG 58

Query: 96  GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
           GT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVA
Sbjct: 59  GTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVA 118

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
           AL P+AEI+G+MG+S  G+QARLMSQALRKL    S+SK I+VFINQ+R K+GVMFG+PE
Sbjct: 119 ALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPE 178

Query: 216 TTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275
           TT GG ALKFY+++RLD+R++ +IK  + I G++TRVKVVKNK+A PFKQ EFDIMYGEG
Sbjct: 179 TTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEG 238

Query: 276 ISFFGELIDLG 286
           IS  G ++D+G
Sbjct: 239 ISREGSILDIG 249


>gi|30691965|gb|AAP33474.1| recombinase A [Samsonia erythrinae]
          Length = 245

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 171/247 (69%), Positives = 206/247 (83%), Gaps = 2/247 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG IM+L    S  + +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGFIMRLAEDRS--KDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETT  GNALKFY+SVRLDIRR GSIKD + + GN+TRVKVVKNK+A+PFKQ EF
Sbjct: 179 VMFGNPETTNCGNALKFYASVRLDIRRTGSIKDGEEVVGNETRVKVVKNKVAAPFKQAEF 238

Query: 269 DIMYGEG 275
            I+YGEG
Sbjct: 239 QILYGEG 245


>gi|52630817|gb|AAU84876.1| RecA [Burkholderia sp. R15273]
          Length = 243

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 182/243 (74%), Positives = 217/243 (89%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGT AF+DAEHA
Sbjct: 1   VVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+
Sbjct: 61  LDIQYAGKLGVNVNDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY
Sbjct: 121 MGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFY 180

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
           +SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A PF++  FDI+YGEGIS  GE+IDLG
Sbjct: 181 ASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPPFREAIFDILYGEGISRQGEVIDLG 240

Query: 287 VKA 289
           V+A
Sbjct: 241 VQA 243


>gi|223717671|emb|CAX46415.1| recombination-repair protein [Vibrio natriegens]
          Length = 243

 Score =  250 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 168/243 (69%), Positives = 208/243 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+M
Sbjct: 61  DPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GEL+DLGV
Sbjct: 181 SVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGV 240

Query: 288 KAS 290
           K  
Sbjct: 241 KHK 243


>gi|30691943|gb|AAP33468.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum]
          Length = 244

 Score =  250 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 170/245 (69%), Positives = 207/245 (84%), Gaps = 2/245 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 2   KGFIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 60  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 120 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IKD + + G++TRVKVVKNK+A+PFKQ EF
Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVGSETRVKVVKNKVAAPFKQAEF 239

Query: 269 DIMYG 273
            IM+G
Sbjct: 240 QIMFG 244


>gi|29421222|gb|AAO62570.1| recombinase A [Pantoea ananatis]
          Length = 243

 Score =  250 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 167/244 (68%), Positives = 207/244 (84%), Gaps = 2/244 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPE+SGKTTL L  IA
Sbjct: 1   GSIMRLGEARSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I
Sbjct: 59  AAQRKGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVI 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           ++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGV
Sbjct: 119 IVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D++ G++TRVKVVKNK+A+PFKQ EF 
Sbjct: 179 MFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSETRVKVVKNKIAAPFKQAEFQ 238

Query: 270 IMYG 273
             +G
Sbjct: 239 FFFG 242


>gi|313585590|gb|ADR70937.1| recombinase [Vibrio cholerae]
 gi|313585592|gb|ADR70938.1| recombinase [Vibrio cholerae]
 gi|313585594|gb|ADR70939.1| recombinase [Vibrio cholerae]
 gi|313585598|gb|ADR70941.1| recombinase [Vibrio cholerae]
 gi|313585600|gb|ADR70942.1| recombinase [Vibrio cholerae]
 gi|313585602|gb|ADR70943.1| recombinase [Vibrio cholerae]
 gi|313585604|gb|ADR70944.1| recombinase [Vibrio cholerae]
 gi|313585606|gb|ADR70945.1| recombinase [Vibrio cholerae]
 gi|313585608|gb|ADR70946.1| recombinase [Vibrio cholerae]
 gi|313585610|gb|ADR70947.1| recombinase [Vibrio cholerae]
          Length = 243

 Score =  250 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 169/243 (69%), Positives = 209/243 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 1   VETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE
Sbjct: 61  HALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 121 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 180

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELID
Sbjct: 181 FYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELID 240

Query: 285 LGV 287
           LGV
Sbjct: 241 LGV 243


>gi|89143235|emb|CAJ57512.1| recombinase A [Microbacterium chocolatum]
          Length = 236

 Score =  250 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 158/234 (67%), Positives = 193/234 (82%)

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            LH IA  Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DMLVRS
Sbjct: 1   TLHAIANVQRAGGIAAFIDAEHALDPDYAQKLGVDIDALLVSQPDTGEQALEIADMLVRS 60

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GA+D++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  ++++   ++FINQ+
Sbjct: 61  GAIDLVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQL 120

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA PF
Sbjct: 121 REKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKMAPPF 180

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317
           KQ EFDI+YG GIS  G LID GV+ +IV KSGAW+++ G++LGQG+EN++ FL
Sbjct: 181 KQAEFDILYGVGISREGSLIDFGVEHAIVKKSGAWYTYDGEQLGQGKENARNFL 234


>gi|54792162|emb|CAE54397.1| recombination-repair protein [Vibrio ichthyoenteri]
 gi|58415522|emb|CAH57175.1| recA protein [Vibrio ichthyoenteri ATCC 700023]
          Length = 246

 Score =  250 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 168/241 (69%), Positives = 207/241 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DA
Sbjct: 6   DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQRVGKTCAFIDA 65

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEI
Sbjct: 66  EHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEI 125

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 126 EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNAL 185

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GEL+
Sbjct: 186 KFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQILYGQGFNREGELV 245

Query: 284 D 284
           D
Sbjct: 246 D 246


>gi|239826692|ref|YP_002949316.1| recA protein [Geobacillus sp. WCH70]
 gi|239806985|gb|ACS24050.1| recA protein [Geobacillus sp. WCH70]
          Length = 283

 Score =  250 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 154/277 (55%), Positives = 204/277 (73%), Gaps = 6/277 (2%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEH------ALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           +   T     K G      +AE       +LD +YA+KLGV++  LL+SQPDTGEQALEI
Sbjct: 1   MCGETRTHGVKRGKIAPPGNAEGDYYLSLSLDPVYAQKLGVNIDELLLSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            + LVRSGAVDIIVIDSVAAL P+AEIEG+MG++  G+QARLMSQALRKL+ +I++SK I
Sbjct: 61  AEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLSGAINKSKAI 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+R K+GVMFG+PETT GG ALKFY+SVRL++RR   IK  + + GN+T++KVVK
Sbjct: 121 AIFINQIREKVGVMFGNPETTPGGRALKFYASVRLEVRRAEQIKQGNDMVGNKTKIKVVK 180

Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316
           NK+A PFK  + DIMYGEGIS  GE+ID+  +  IV KSG+W+S+K +RLGQGREN+K F
Sbjct: 181 NKVAPPFKTADVDIMYGEGISREGEIIDMASELDIVQKSGSWYSYKDERLGQGRENAKQF 240

Query: 317 LRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           L+EN  IAE I   +R++ G+ + S+        +++
Sbjct: 241 LKENPHIAEEIAQEIRRHYGIESPSVSNNANEMQQEE 277


>gi|208659528|gb|ACI31194.1| RecA [Vibrio breoganii]
 gi|208659530|gb|ACI31195.1| RecA [Vibrio breoganii]
 gi|208659532|gb|ACI31196.1| RecA [Vibrio breoganii]
          Length = 246

 Score =  250 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 169/248 (68%), Positives = 209/248 (84%), Gaps = 2/248 (0%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
           G   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +Q+ G
Sbjct: 1   GDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQREG 58

Query: 96  GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
            TCAF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSGA+D++V+DSVA
Sbjct: 59  KTCAFIDAEHALDPIYAQKLGVNIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSVA 118

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
           ALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PE
Sbjct: 119 ALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPE 178

Query: 216 TTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275
           TTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  IMYG+G
Sbjct: 179 TTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQIMYGQG 238

Query: 276 ISFFGELI 283
            +  GELI
Sbjct: 239 FNREGELI 246


>gi|54792172|emb|CAE54402.1| recombination-repair protein [Vibrio fortis]
          Length = 246

 Score =  250 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 172/241 (71%), Positives = 207/241 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAFVDA
Sbjct: 6   DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFVDA 65

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEI
Sbjct: 66  EHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEI 125

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 126 EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNAL 185

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GELI
Sbjct: 186 KFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQAETQILYGQGFNREGELI 245

Query: 284 D 284
           D
Sbjct: 246 D 246


>gi|290795123|gb|ADD64577.1| RecA recombinase [Vibrio sp. FAL5133]
          Length = 243

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 173/242 (71%), Positives = 208/242 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +QK G TCAFVDA
Sbjct: 2   DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEI
Sbjct: 62  EHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEI 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 122 EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNAL 181

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GELI
Sbjct: 182 KFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELI 241

Query: 284 DL 285
           DL
Sbjct: 242 DL 243


>gi|169248056|gb|ACA51811.1| RecA [Aliivibrio logei]
 gi|169248058|gb|ACA51812.1| RecA [Aliivibrio logei]
          Length = 244

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 172/244 (70%), Positives = 208/244 (85%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  I+ +QK G TCAF+DAEHALD
Sbjct: 1   STGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLEVISAAQKQGKTCAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYA+KLG+D+  LLISQPD GEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG
Sbjct: 61  PIYAQKLGIDINELLISQPDNGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARL+SQ++RK+T ++  S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+S
Sbjct: 121 DSHMGLQARLLSQSMRKMTGNLKASNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           VRLDIRR G++KD D + GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK
Sbjct: 181 VRLDIRRTGAVKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVK 240

Query: 289 ASIV 292
             +V
Sbjct: 241 HKLV 244


>gi|52548224|gb|AAU82101.1| recombinase A [Pantoea ananatis]
          Length = 242

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 170/244 (69%), Positives = 209/244 (85%), Gaps = 2/244 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPE+SGKTTL L  IA
Sbjct: 1   GSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I
Sbjct: 59  AAQRKGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVI 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           ++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGV
Sbjct: 119 IVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D++ G++TRVKVVKNK+A+PFKQ EF 
Sbjct: 179 MFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSETRVKVVKNKIAAPFKQAEFQ 238

Query: 270 IMYG 273
           IMYG
Sbjct: 239 IMYG 242


>gi|29421228|gb|AAO62573.1| recombinase A [Pantoea agglomerans]
          Length = 243

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 170/245 (69%), Positives = 211/245 (86%), Gaps = 2/245 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRLGEARSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +Q+ G TCAF+DAEHALD +YA+KLGVD++NLL SQPDTGEQALEI D L RSGAVD+I
Sbjct: 59  SAQRKGKTCAFIDAEHALDPVYAKKLGVDIENLLCSQPDTGEQALEICDALARSGAVDVI 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           ++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGV
Sbjct: 119 IVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D++ G++TRVKVVKNK+A+PFKQ EF 
Sbjct: 179 MFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSETRVKVVKNKIAAPFKQAEFQ 238

Query: 270 IMYGE 274
           IMYG+
Sbjct: 239 IMYGK 243


>gi|281410932|gb|ADA68874.1| recombination repair protein [Vibrio sp. MM5]
          Length = 240

 Score =  249 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 164/240 (68%), Positives = 206/240 (85%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P GRIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL
Sbjct: 1   LPMGRIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALL 60

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+
Sbjct: 61  VSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAM 120

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D
Sbjct: 121 RKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGD 180

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GEL+DLGVK  +V+K+GAW+S+ G
Sbjct: 181 EVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKAGAWYSYNG 240


>gi|156788958|gb|ABU96050.1| DNA recombinase [Vibrio parahaemolyticus]
          Length = 245

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 165/247 (66%), Positives = 207/247 (83%), Gaps = 2/247 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+
Sbjct: 1   RLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQR 58

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DS
Sbjct: 59  EGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDS 118

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           VAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+
Sbjct: 119 VAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGN 178

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IMYG
Sbjct: 179 PETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYG 238

Query: 274 EGISFFG 280
           +G +  G
Sbjct: 239 QGFNREG 245


>gi|29421220|gb|AAO62569.1| recombinase A [Pantoea stewartii]
          Length = 243

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 168/244 (68%), Positives = 206/244 (84%), Gaps = 2/244 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPE+SGKTTL L  IA
Sbjct: 1   GSIMRLGEARSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I
Sbjct: 59  AAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVI 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           ++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGV
Sbjct: 119 IVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFY+SVRLDIRR+G+IK  D++ G++TRVKVVKNKMA+PFKQ EF 
Sbjct: 179 MFGNPETTTGGNALKFYASVRLDIRRIGAIKKGDNVVGSETRVKVVKNKMAAPFKQAEFQ 238

Query: 270 IMYG 273
             YG
Sbjct: 239 FXYG 242


>gi|30691935|gb|AAP33464.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum]
          Length = 244

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 170/245 (69%), Positives = 207/245 (84%), Gaps = 2/245 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 2   KGVIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 60  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 120 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF
Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEF 239

Query: 269 DIMYG 273
            IMYG
Sbjct: 240 QIMYG 244


>gi|223635953|emb|CAQ03778.1| recombination-repair protein [Enterovibrio calviensis]
          Length = 249

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 183/251 (72%), Positives = 216/251 (86%), Gaps = 2/251 (0%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
           G   ++   IE VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  +A++QK G
Sbjct: 1   GDDRTM--DIETVSTGSLSLDIALGAGGLPFGRIVEIYGPESSGKTTLTLQVVAEAQKAG 58

Query: 96  GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
            TCAF+DAEHALD +YA KLGVD+ NLL+SQPDTGEQALEI D L RSGAVD+I+IDSVA
Sbjct: 59  KTCAFIDAEHALDPVYAGKLGVDIDNLLVSQPDTGEQALEIADALTRSGAVDVIIIDSVA 118

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
           ALTP+AEIEG+MG+S  G+QAR++SQA+RKLT++I  S  +++FINQ+RMKIGVMFG+PE
Sbjct: 119 ALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIGVMFGNPE 178

Query: 216 TTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275
           TTTGGNALKFY+SVRLDIRR+GSIK+ D I GN TRVKVVKNK+A+PFKQ EF IMYGEG
Sbjct: 179 TTTGGNALKFYASVRLDIRRIGSIKEGDEIVGNDTRVKVVKNKIAAPFKQAEFQIMYGEG 238

Query: 276 ISFFGELIDLG 286
           I+ +GELIDLG
Sbjct: 239 INLYGELIDLG 249


>gi|289524812|emb|CBJ94462.1| recA protein [Vibrio sp. Rd 14.14]
          Length = 241

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 169/241 (70%), Positives = 208/241 (86%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P GRIVE+YGPESSGKTTL L  IA +QK G TCAF+DAEHALD IYA+KLGVD+  LL
Sbjct: 1   LPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFIDAEHALDPIYAQKLGVDIDALL 60

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+
Sbjct: 61  VSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAM 120

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D
Sbjct: 121 RKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGD 180

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
            + GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +V+K+GAW+S+ G
Sbjct: 181 EVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKNKLVEKAGAWYSYNG 240

Query: 304 Q 304
           +
Sbjct: 241 E 241


>gi|29421224|gb|AAO62571.1| recombinase A [Pantoea ananatis]
          Length = 243

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 170/244 (69%), Positives = 209/244 (85%), Gaps = 2/244 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPE+SGKTTL L  IA
Sbjct: 1   GSIMRLGEARSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I
Sbjct: 59  AAQRKGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVI 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           ++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGV
Sbjct: 119 IVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D++ G++TRVKVVKNK+A+PFKQ EF 
Sbjct: 179 MFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSETRVKVVKNKIAAPFKQAEFQ 238

Query: 270 IMYG 273
           IMYG
Sbjct: 239 IMYG 242


>gi|30691937|gb|AAP33465.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum]
          Length = 244

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 169/245 (68%), Positives = 207/245 (84%), Gaps = 2/245 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 2   KGFIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 60  ASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 120 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF
Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEF 239

Query: 269 DIMYG 273
            IM+G
Sbjct: 240 QIMFG 244


>gi|30691919|gb|AAP33457.1| recombinase A [Pectobacterium atrosepticum]
          Length = 244

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 170/245 (69%), Positives = 207/245 (84%), Gaps = 2/245 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 2   KGFIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 60  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 120 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF
Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEF 239

Query: 269 DIMYG 273
            IMYG
Sbjct: 240 QIMYG 244


>gi|151400025|gb|ABS11128.1| RecA [Vibrio mimicus]
 gi|151400027|gb|ABS11129.1| RecA [Vibrio cholerae]
 gi|151400029|gb|ABS11130.1| RecA [Vibrio cholerae]
 gi|151400031|gb|ABS11131.1| RecA [Vibrio cholerae]
 gi|151400033|gb|ABS11132.1| RecA [Vibrio cholerae]
 gi|151400035|gb|ABS11133.1| RecA [Vibrio cholerae]
 gi|151400037|gb|ABS11134.1| RecA [Vibrio cholerae]
 gi|157493175|gb|ABV57953.1| RecA [Vibrio cholerae]
 gi|157493181|gb|ABV57956.1| RecA [Vibrio cholerae]
          Length = 246

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 168/243 (69%), Positives = 208/243 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DA
Sbjct: 4   DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDA 63

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEI
Sbjct: 64  EHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEI 123

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 124 EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNAL 183

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELI
Sbjct: 184 KFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELI 243

Query: 284 DLG 286
           DLG
Sbjct: 244 DLG 246


>gi|52630801|gb|AAU84868.1| RecA [Burkholderia caledonica]
          Length = 242

 Score =  248 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 180/242 (74%), Positives = 215/242 (88%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AE
Sbjct: 61  AEHALDIQYAGKLGVNVNDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           IEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNA
Sbjct: 121 IEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNA 180

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+
Sbjct: 181 LKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEV 240

Query: 283 ID 284
           ID
Sbjct: 241 ID 242


>gi|30691955|gb|AAP33472.1| recombinase A [Pectobacterium cacticida]
          Length = 243

 Score =  248 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 168/245 (68%), Positives = 208/245 (84%), Gaps = 2/245 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG + S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRLGEERSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNKMA+PFKQ EF
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVIGSETRVKVVKNKMAAPFKQAEF 238

Query: 269 DIMYG 273
             ++G
Sbjct: 239 QSLFG 243


>gi|190411099|gb|ACE78304.1| RecA [Vibrio campbellii]
          Length = 247

 Score =  248 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 168/249 (67%), Positives = 209/249 (83%), Gaps = 2/249 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ 
Sbjct: 1   LGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQRE 58

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSV
Sbjct: 59  GKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSV 118

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+P
Sbjct: 119 AALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNP 178

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           ETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IMYG+
Sbjct: 179 ETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQ 238

Query: 275 GISFFGELI 283
           G +  GELI
Sbjct: 239 GFNREGELI 247


>gi|211774528|gb|AAX33837.2| RecA [Aeromonas schubertii]
          Length = 239

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 179/239 (74%), Positives = 205/239 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S GSL LDIALGIGG P GRIVEIYGPESSGKTTL L  IA++QK G TCAFVDA
Sbjct: 1   DIEAISKGSLSLDIALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA KLGV++ +LL+SQPDTGEQA EI DMLVRSGAVD+I++DSVAALTP+AEI
Sbjct: 61  EHALDPIYAAKLGVNVDDLLVSQPDTGEQAPEICDMLVRSGAVDVIIVDSVAALTPKAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG MG+S  G+Q RLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 121 EGQMGDSHVGLQGRLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGNPETTTGGNAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           KFY+SVRLDIRR G+IKD + + GN+TRVKVVKNK+A PFKQ EF IMYG GIS  GEL
Sbjct: 181 KFYASVRLDIRRTGAIKDGEEVVGNETRVKVVKNKVAPPFKQAEFQIMYGAGISKEGEL 239


>gi|157493215|gb|ABV57973.1| RecA [Vibrio cholerae]
          Length = 244

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 168/243 (69%), Positives = 208/243 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DA
Sbjct: 2   DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEI
Sbjct: 62  EHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEI 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 122 EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNAL 181

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELI
Sbjct: 182 KFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELI 241

Query: 284 DLG 286
           DLG
Sbjct: 242 DLG 244


>gi|30691947|gb|AAP33470.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum]
          Length = 243

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 169/245 (68%), Positives = 207/245 (84%), Gaps = 2/245 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGYIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEF 238

Query: 269 DIMYG 273
            IM+G
Sbjct: 239 QIMFG 243


>gi|30266977|gb|AAP21597.1| recombinase A [Pectobacterium atrosepticum]
          Length = 245

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 171/246 (69%), Positives = 206/246 (83%), Gaps = 2/246 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 2   KGFIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 60  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 120 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDI R G IK+ + I G++TRVKVVKNK+A+PFKQ EF
Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIHRTGPIKEGEEIVGSETRVKVVKNKVAAPFKQAEF 239

Query: 269 DIMYGE 274
            IMYGE
Sbjct: 240 QIMYGE 245


>gi|315021931|gb|ADT70833.1| recombinase A [Pectobacterium wasabiae]
          Length = 240

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 168/242 (69%), Positives = 205/242 (84%), Gaps = 2/242 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IKD + + G++TRVKVVKNK+A+PFKQ EF
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVGSETRVKVVKNKVAAPFKQAEF 238

Query: 269 DI 270
            I
Sbjct: 239 QI 240


>gi|47457168|emb|CAE54391.1| recombination-repair protein [Photobacterium iliopiscarium]
 gi|58415355|emb|CAH57092.1| recA protein [Photobacterium iliopiscarium]
          Length = 246

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 173/241 (71%), Positives = 207/241 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I+ +QK G TCAF+DA
Sbjct: 6   DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVISAAQKQGKTCAFIDA 65

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEI
Sbjct: 66  EHALDPIYAQKLGVDINELLVSQPDTGEQALEIVDALARSGAVDVIVVDSVAALTPKAEI 125

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 126 EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNAL 185

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GELI
Sbjct: 186 KFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGQGFNRNGELI 245

Query: 284 D 284
           D
Sbjct: 246 D 246


>gi|52630809|gb|AAU84872.1| RecA [Burkholderia sp. LMG 21262]
          Length = 243

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 179/243 (73%), Positives = 214/243 (88%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
             E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGT AF
Sbjct: 1   AVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAF 60

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           +DAEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+
Sbjct: 61  IDAEHALDIQYAGKLGVNVNDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPK 120

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
           AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGG
Sbjct: 121 AEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGG 180

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           NALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A PF++  FDI+YGEGIS  G
Sbjct: 181 NALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPPFREAIFDILYGEGISRQG 240

Query: 281 ELI 283
           E+I
Sbjct: 241 EVI 243


>gi|208659534|gb|ACI31197.1| RecA [Vibrio breoganii]
          Length = 246

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 168/248 (67%), Positives = 209/248 (84%), Gaps = 2/248 (0%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
           G   ++   +E +S+GSL +DIALG GG P GRIVE+YGPESSGKTTL L  IA +Q+ G
Sbjct: 1   GDNRTM--DVETISTGSLSIDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQREG 58

Query: 96  GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
            TCAF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSGA+D++V+DSVA
Sbjct: 59  KTCAFIDAEHALDPIYAQKLGVNIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSVA 118

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
           ALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PE
Sbjct: 119 ALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPE 178

Query: 216 TTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275
           TTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  IMYG+G
Sbjct: 179 TTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQIMYGQG 238

Query: 276 ISFFGELI 283
            +  GELI
Sbjct: 239 FNREGELI 246


>gi|30691923|gb|AAP33458.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum]
 gi|30691925|gb|AAP33459.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum]
 gi|30691931|gb|AAP33462.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum]
 gi|30691933|gb|AAP33463.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum]
          Length = 243

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 169/245 (68%), Positives = 207/245 (84%), Gaps = 2/245 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGFIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEF 238

Query: 269 DIMYG 273
            IM+G
Sbjct: 239 QIMFG 243


>gi|313585596|gb|ADR70940.1| recombinase [Vibrio cholerae]
          Length = 243

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 168/242 (69%), Positives = 208/242 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 1   VETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE
Sbjct: 61  HALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 121 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 180

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           FY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELID
Sbjct: 181 FYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELID 240

Query: 285 LG 286
           LG
Sbjct: 241 LG 242


>gi|52630779|gb|AAU84857.1| RecA [Pandoraea pnomenusa]
          Length = 240

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 176/239 (73%), Positives = 210/239 (87%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           +V S+GSLGLDIALG+GG P+GR++EIYGPESSGKTTL L  +A+ QK GGTCAF+DAEH
Sbjct: 2   QVASTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEH 61

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA KLGV +  LLISQPDTGEQALEI D LVRSG++D+I+IDSVAAL P+AEIEG
Sbjct: 62  ALDVGYASKLGVSVPELLISQPDTGEQALEIADALVRSGSIDLIIIDSVAALVPKAEIEG 121

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +MG+SLPG+QARLMSQALRKLT +I R+ C ++FINQ+RMKIGVMFG+PETTTGGNALKF
Sbjct: 122 EMGDSLPGLQARLMSQALRKLTGTIKRTNCTVIFINQIRMKIGVMFGNPETTTGGNALKF 181

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           YSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YG+GIS  GE+ID
Sbjct: 182 YSSVRLDIRRIGSIKKGDEVVGNETRVKVVKNKVSPPFREAIFDILYGQGISREGEIID 240


>gi|290795131|gb|ADD64580.1| RecA recombinase [Vibrio sp. FALF162]
 gi|290795133|gb|ADD64581.1| RecA recombinase [Vibrio sp. FALF454]
          Length = 249

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 182/251 (72%), Positives = 216/251 (86%), Gaps = 2/251 (0%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
           G   ++   I+ VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  +A++QK G
Sbjct: 1   GDDRTM--DIDTVSTGSLSLDIALGAGGLPFGRIVEIYGPESSGKTTLTLQVVAEAQKIG 58

Query: 96  GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
            TCAF+DAEHALD +YA KLGVD+ NLL+SQPDTGEQALEI D L RSGAVD+I+IDSVA
Sbjct: 59  KTCAFIDAEHALDPVYAGKLGVDIDNLLVSQPDTGEQALEIADALTRSGAVDVIIIDSVA 118

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
           ALTP+AEIEG+MG+S  G+QAR++SQA+RKLT++I  S  +++FINQ+RMKIGVMFG+PE
Sbjct: 119 ALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIGVMFGNPE 178

Query: 216 TTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275
           TTTGGNALKFY+SVRLDIRR+GSIK+ D I GN TRVKVVKNK+A+PFKQ EF IMYGEG
Sbjct: 179 TTTGGNALKFYASVRLDIRRIGSIKEGDEIVGNDTRVKVVKNKIAAPFKQAEFQIMYGEG 238

Query: 276 ISFFGELIDLG 286
           I+ +GELIDLG
Sbjct: 239 INLYGELIDLG 249


>gi|157493179|gb|ABV57955.1| RecA [Vibrio cholerae]
 gi|157493213|gb|ABV57972.1| RecA [Vibrio cholerae]
          Length = 245

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 167/242 (69%), Positives = 207/242 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DA
Sbjct: 4   DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDA 63

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEI
Sbjct: 64  EHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEI 123

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 124 EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNAL 183

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELI
Sbjct: 184 KFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELI 243

Query: 284 DL 285
           DL
Sbjct: 244 DL 245


>gi|290795135|gb|ADD64582.1| RecA recombinase [Vibrio sp. FALF33]
          Length = 248

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 181/243 (74%), Positives = 213/243 (87%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I+ VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  +A++QK G TCAF+DA
Sbjct: 6   DIDTVSTGSLSLDIALGAGGLPFGRIVEIYGPESSGKTTLTLQVVAEAQKIGKTCAFIDA 65

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YA KLGVD+ NLL+SQPDTGEQALEI D L RSGAVD+I+IDSVAALTP+AEI
Sbjct: 66  EHALDPVYAGKLGVDIDNLLVSQPDTGEQALEIADALTRSGAVDVIIIDSVAALTPKAEI 125

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QAR++SQA+RKLT++I  S  +++FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 126 EGEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIGVMFGNPETTTGGNAL 185

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+SVRLDIRR+GSIK+ D I GN TRVKVVKNK+A+PFKQ EF IMYGEGI+ +GELI
Sbjct: 186 KFYASVRLDIRRIGSIKEGDEIVGNDTRVKVVKNKIAAPFKQAEFQIMYGEGINLYGELI 245

Query: 284 DLG 286
           DLG
Sbjct: 246 DLG 248


>gi|54792168|emb|CAE54400.1| recombination-repair protein [Vibrio diabolicus]
 gi|58415445|emb|CAH57137.1| recA protein [Vibrio diabolicus]
          Length = 246

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 165/241 (68%), Positives = 206/241 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DA
Sbjct: 6   DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDA 65

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEI
Sbjct: 66  EHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEI 125

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 126 EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNAL 185

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GEL+
Sbjct: 186 KFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELV 245

Query: 284 D 284
           D
Sbjct: 246 D 246


>gi|54792158|emb|CAE54395.1| recombination-repair protein [Vibrio cincinnatiensis]
 gi|58415425|emb|CAH57127.1| recA protein [Vibrio cincinnatiensis]
          Length = 246

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 166/241 (68%), Positives = 206/241 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+GSL LDIALG GG P GRIVE++GPESSGKTTL L  IA +Q+ G TCAF+DA
Sbjct: 6   DVETISTGSLSLDIALGAGGLPMGRIVEVFGPESSGKTTLTLELIASAQREGKTCAFIDA 65

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEI
Sbjct: 66  EHALDPVYARKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEI 125

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 126 EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNAL 185

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GEL+
Sbjct: 186 KFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELV 245

Query: 284 D 284
           D
Sbjct: 246 D 246


>gi|179185119|gb|ACB78171.1| RecA [Vibrio gigantis]
 gi|179185140|gb|ACB78172.1| RecA [Vibrio crassostreae]
          Length = 241

 Score =  247 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 171/240 (71%), Positives = 206/240 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +QK G TCAFVDA
Sbjct: 2   DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEI
Sbjct: 62  EHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEI 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 122 EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNAL 181

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GELI
Sbjct: 182 KFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELI 241


>gi|52630821|gb|AAU84878.1| RecA [Burkholderia sp. R20943]
          Length = 244

 Score =  246 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 179/244 (73%), Positives = 216/244 (88%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           +VVS+GSLGL+IALG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGT AF+DAEH
Sbjct: 1   QVVSTGSLGLNIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG
Sbjct: 61  ALDIQYAGKLGVNVNDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +MG+SLPG+QARLMSQ LRKLT +I R+ C+++ INQ+RMKIGVMFG+PETTTGGNALKF
Sbjct: 121 EMGDSLPGLQARLMSQELRKLTGTIKRTNCLVILINQIRMKIGVMFGNPETTTGGNALKF 180

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           Y+SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A PF++  FDI+YGEGIS  GE+IDL
Sbjct: 181 YASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPPFREAIFDILYGEGISRQGEVIDL 240

Query: 286 GVKA 289
           GV+A
Sbjct: 241 GVQA 244


>gi|156069655|gb|ABU44740.1| RecA [Vibrio parahaemolyticus]
          Length = 243

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 168/243 (69%), Positives = 208/243 (85%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           L LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA
Sbjct: 1   LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           +KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  
Sbjct: 61  KKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHM 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD
Sbjct: 121 GLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 180

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           IRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GEL+DLGVK  +V
Sbjct: 181 IRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLV 240

Query: 293 DKS 295
           +K+
Sbjct: 241 EKA 243


>gi|215428164|ref|ZP_03426083.1| recombinase A [Mycobacterium tuberculosis T92]
 gi|289751391|ref|ZP_06510769.1| recombination protein recA [Mycobacterium tuberculosis T92]
 gi|289691978|gb|EFD59407.1| recombination protein recA [Mycobacterium tuberculosis T92]
          Length = 790

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 147/223 (65%), Positives = 186/223 (83%), Gaps = 2/223 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+ KALE A++QI++ YGKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GR
Sbjct: 4   TPDREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPD
Sbjct: 62  VIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T 
Sbjct: 122 TGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
           +++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+
Sbjct: 182 ALNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRM 224



 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/86 (50%), Positives = 65/86 (75%)

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VV +  + PFKQ EFDI+YG+GIS  G LID+GV   ++ KSGAWF+++G++LGQG+EN+
Sbjct: 687 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENA 746

Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339
           + FL EN ++A+ IE  +++  G+ A
Sbjct: 747 RNFLVENADVADEIEKKIKEKLGIGA 772


>gi|156069609|gb|ABU44717.1| RecA [Vibrio parahaemolyticus]
          Length = 243

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 169/243 (69%), Positives = 208/243 (85%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           L LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA
Sbjct: 1   LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           +KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  
Sbjct: 61  KKLGVDIDALLVSQPDTGEQALEICDALTRSGAIDVMVVDSVAALTPKAEIEGEMGDSHM 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD
Sbjct: 121 GLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 180

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           IRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V
Sbjct: 181 IRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLV 240

Query: 293 DKS 295
           +K+
Sbjct: 241 EKA 243


>gi|54792186|emb|CAE54409.1| recombination-repair protein [Vibrio mimicus]
 gi|58415572|emb|CAH57200.1| recA protein [Vibrio mimicus]
          Length = 246

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 166/241 (68%), Positives = 206/241 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DA
Sbjct: 6   DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDA 65

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEI
Sbjct: 66  EHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEI 125

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 126 EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNAL 185

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELI
Sbjct: 186 KFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELI 245

Query: 284 D 284
           D
Sbjct: 246 D 246


>gi|156069601|gb|ABU44713.1| RecA [Vibrio parahaemolyticus]
 gi|156069603|gb|ABU44714.1| RecA [Vibrio parahaemolyticus]
 gi|156069605|gb|ABU44715.1| RecA [Vibrio parahaemolyticus]
 gi|156069607|gb|ABU44716.1| RecA [Vibrio parahaemolyticus]
 gi|156069611|gb|ABU44718.1| RecA [Vibrio parahaemolyticus]
 gi|156069615|gb|ABU44720.1| RecA [Vibrio parahaemolyticus]
 gi|156069617|gb|ABU44721.1| RecA [Vibrio parahaemolyticus]
 gi|156069619|gb|ABU44722.1| RecA [Vibrio parahaemolyticus]
 gi|156069621|gb|ABU44723.1| RecA [Vibrio parahaemolyticus]
 gi|156069623|gb|ABU44724.1| RecA [Vibrio parahaemolyticus]
 gi|156069625|gb|ABU44725.1| RecA [Vibrio parahaemolyticus]
 gi|156069627|gb|ABU44726.1| RecA [Vibrio parahaemolyticus]
 gi|156069629|gb|ABU44727.1| RecA [Vibrio parahaemolyticus]
 gi|156069631|gb|ABU44728.1| RecA [Vibrio parahaemolyticus]
 gi|156069633|gb|ABU44729.1| RecA [Vibrio parahaemolyticus]
 gi|156069635|gb|ABU44730.1| RecA [Vibrio parahaemolyticus]
 gi|156069637|gb|ABU44731.1| RecA [Vibrio parahaemolyticus]
 gi|156069639|gb|ABU44732.1| RecA [Vibrio parahaemolyticus]
 gi|156069641|gb|ABU44733.1| RecA [Vibrio parahaemolyticus]
 gi|156069643|gb|ABU44734.1| RecA [Vibrio parahaemolyticus]
 gi|156069645|gb|ABU44735.1| RecA [Vibrio parahaemolyticus]
 gi|156069647|gb|ABU44736.1| RecA [Vibrio parahaemolyticus]
 gi|156069649|gb|ABU44737.1| RecA [Vibrio parahaemolyticus]
 gi|156069651|gb|ABU44738.1| RecA [Vibrio parahaemolyticus]
 gi|156069653|gb|ABU44739.1| RecA [Vibrio parahaemolyticus]
 gi|156069657|gb|ABU44741.1| RecA [Vibrio parahaemolyticus]
 gi|156069659|gb|ABU44742.1| RecA [Vibrio parahaemolyticus]
 gi|156069661|gb|ABU44743.1| RecA [Vibrio parahaemolyticus]
 gi|156069663|gb|ABU44744.1| RecA [Vibrio parahaemolyticus]
 gi|156069665|gb|ABU44745.1| RecA [Vibrio parahaemolyticus]
 gi|193221979|gb|ACF16354.1| RecA [Vibrio parahaemolyticus]
 gi|193221981|gb|ACF16355.1| RecA [Vibrio parahaemolyticus]
          Length = 243

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 169/243 (69%), Positives = 208/243 (85%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           L LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA
Sbjct: 1   LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           +KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  
Sbjct: 61  KKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHM 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD
Sbjct: 121 GLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 180

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           IRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V
Sbjct: 181 IRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLV 240

Query: 293 DKS 295
           +K+
Sbjct: 241 EKA 243


>gi|52630813|gb|AAU84874.1| RecA [Burkholderia glumae]
          Length = 242

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 183/242 (75%), Positives = 215/242 (88%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  
Sbjct: 1   GSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQ 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+S
Sbjct: 61  YAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDS 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
           LPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR
Sbjct: 121 LPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVR 180

Query: 231 LDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS 290
           LDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A 
Sbjct: 181 LDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRESIFDILYGEGISRQGEIIDLGVQAK 240

Query: 291 IV 292
           IV
Sbjct: 241 IV 242


>gi|269116005|gb|ACZ26522.1| RecA [Enterobacter sp. i1]
          Length = 239

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 173/239 (72%), Positives = 211/239 (88%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVD+ NLL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++
Sbjct: 61  DPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
           SVRLDIRR+G++K+ +++ G++TRVKVVKNK+A+PFKQ EF I+YGEGI+FFGEL+DLG
Sbjct: 181 SVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFFGELVDLG 239


>gi|269784252|emb|CBH50771.1| recA protein [Vibrio sp. Rd2L5]
          Length = 243

 Score =  245 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 174/243 (71%), Positives = 208/243 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +QK G TCAFVDAEHALD IY
Sbjct: 1   SLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+KLGVD+  LL+SQPDTGE ALEI D L RSGA+D++VIDSVAALTP+AEIEG+MG+S 
Sbjct: 61  AQKLGVDIDALLVSQPDTGEPALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
            G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRL
Sbjct: 121 MGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRL 180

Query: 232 DIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASI 291
           DIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +
Sbjct: 181 DIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKNKL 240

Query: 292 VDK 294
           V+K
Sbjct: 241 VEK 243


>gi|30691949|gb|AAP33471.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum]
          Length = 243

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 167/242 (69%), Positives = 204/242 (84%), Gaps = 2/242 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGFIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEF 238

Query: 269 DI 270
            I
Sbjct: 239 QI 240


>gi|15384252|gb|AAK96212.1|AF405550_1 recombinase [Helicobacter pylori]
          Length = 248

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 163/248 (65%), Positives = 205/248 (82%), Gaps = 1/248 (0%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+
Sbjct: 1   VEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFI 60

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           DAEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+A
Sbjct: 61  DAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKA 120

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-GVMFGSPETTTGG 220
           EI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKI  + +G PETTTGG
Sbjct: 121 EIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGGPETTTGG 180

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           NALKFY+SVR+DIRR+ ++K  +   GN+ + KVVKNK+A PF++ EFDIM+GEGIS  G
Sbjct: 181 NALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEG 240

Query: 281 ELIDLGVK 288
           E+ID GVK
Sbjct: 241 EIIDYGVK 248


>gi|206596730|emb|CAQ68395.1| recombinase protein A [Brucella sp. BO1]
          Length = 210

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 165/210 (78%), Positives = 193/210 (91%)

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT
Sbjct: 1   DTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLT 60

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + G
Sbjct: 61  GSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVG 120

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           NQTRVKVVKNK+A PFKQVEFDIMYG G+S  GEL+DLGVKA +V+KSGAWFS+  QRLG
Sbjct: 121 NQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQRLG 180

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGL 337
           QGREN+K +L++N E+A  IE+ LRQNAGL
Sbjct: 181 QGRENAKQYLKDNPEVAREIETTLRQNAGL 210


>gi|13357640|ref|NP_077914.1| recombinase A [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170761963|ref|YP_001752163.1| recombinase A [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171920334|ref|ZP_02690990.2| protein RecA [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|183508549|ref|ZP_02689824.2| protein RecA [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|186701764|ref|ZP_02553288.2| protein RecA [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|11387035|sp|Q9PR61|RECA_UREPA RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|189039614|sp|B1AI69|RECA_UREP2 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|11277981|pir||C82935 recombination protein UU084 [imported] - Ureaplasma urealyticum
 gi|6899036|gb|AAF30489.1|AE002108_2 recombination protein [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827540|gb|ACA32802.1| protein RecA [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171902757|gb|EDT49046.1| protein RecA [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|182675990|gb|EDT87895.1| protein RecA [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|186701038|gb|EDU19320.1| protein RecA [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 334

 Score =  245 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 139/329 (42%), Positives = 208/329 (63%), Gaps = 6/329 (1%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           KE N ++K       ++ ++  + K +     +     E I  +S+GS+ +D   GI G 
Sbjct: 2   KENNNLEKL----DPIATLETKFAKSSY--FIADEIKDEKINAISTGSIHIDQITGINGI 55

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P G+I EIYG ESSGKTT+AL TIA+ QKTGGT   +D E + D  YA+ L VDL  L+I
Sbjct: 56  PVGKITEIYGNESSGKTTIALQTIAECQKTGGTVVLLDLEGSFDINYAKSLKVDLTKLII 115

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           +QP TGEQA ++ + L+++ ++D+IVIDSVAA+ P +E + +M E+L G  ARLMS+ LR
Sbjct: 116 TQPQTGEQAFDMIETLIKTNSIDLIVIDSVAAMLPESEYQANMNEALMGAHARLMSKGLR 175

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           K+   I++SK  ++FINQ+R KI   FG+PE TTGG ALKFY+S+R++ ++   IK+  +
Sbjct: 176 KIQPLINKSKTAIIFINQLREKINTFFGNPEMTTGGKALKFYASLRIETKKADLIKEGIN 235

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
             G +T+V  VKNK+A P +    DI +G G  +  E+ID  ++  ++ K+G+WF F   
Sbjct: 236 KIGIKTKVTTVKNKLAPPLQTCFIDIFFGSGFDYNNEIIDFAIQYGVLKKNGSWFYFNDN 295

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQ 333
           ++GQGRE  K  L +N E+   I     +
Sbjct: 296 KIGQGREQLKNTLSKNNELFIQISEKTLE 324


>gi|52630775|gb|AAU84855.1| RecA [Burkholderia thailandensis]
          Length = 238

 Score =  245 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 179/238 (75%), Positives = 211/238 (88%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD
Sbjct: 1   STGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
             YA KLGV++  LLISQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG
Sbjct: 61  VQYASKLGVNVPELLISQPDTGEQALEIVDALVRSGSIDMIVIDSVAALVPKAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           ++LPG+QARLMSQALRKLT SI R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSS
Sbjct: 121 DALPGLQARLMSQALRKLTGSIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
           VRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLG
Sbjct: 181 VRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLG 238


>gi|52630803|gb|AAU84869.1| RecA [Burkholderia sp. LMG 19510]
          Length = 236

 Score =  245 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 177/236 (75%), Positives = 211/236 (89%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGT AF+DAEHA
Sbjct: 1   VVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YARKLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+
Sbjct: 61  LDIQYARKLGVNVNDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY
Sbjct: 121 MGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFY 180

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           +SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A PF++  FDI+YGEGIS  GE+
Sbjct: 181 ASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPPFREAIFDILYGEGISRQGEV 236


>gi|156069613|gb|ABU44719.1| RecA [Vibrio parahaemolyticus]
          Length = 243

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 167/243 (68%), Positives = 206/243 (84%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           L LDIALG GG P GRIVEIYGPESS KTTL L  IA +Q+ G TCAF+DAEHAL  +YA
Sbjct: 1   LSLDIALGAGGLPMGRIVEIYGPESSSKTTLTLELIAAAQREGKTCAFIDAEHALYPVYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           +KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  
Sbjct: 61  KKLGVDIDALLVSQPDTGEQALEICDALTRSGAIDVMVVDSVAALTPKAEIEGEMGDSHM 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD
Sbjct: 121 GLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 180

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           IRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V
Sbjct: 181 IRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLV 240

Query: 293 DKS 295
           +K+
Sbjct: 241 EKA 243


>gi|296087050|emb|CBI33377.3| unnamed protein product [Vitis vinifera]
          Length = 398

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 134/337 (39%), Positives = 222/337 (65%), Gaps = 5/337 (1%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +Y  ++   +K  AL  A+S++   +G+ +++ L  +  +     V+S+GSL LD+ALGI
Sbjct: 59  EYGNDVKAAEKDTALRLAISRLAGDFGRESMLSL-QRFFVSRHAPVISTGSLKLDLALGI 117

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG PKGRIVEIYG E+SGKTTLALH I ++QK GG CA++D E+A++  +A  +GV++ N
Sbjct: 118 GGLPKGRIVEIYGQEASGKTTLALHIIKEAQKLGGYCAYLDVENAMNPSFAESMGVNVDN 177

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLIS PD+ E  L + + L +SG++D+IV+DSVAAL P+ E++  +G +   +Q+++M+Q
Sbjct: 178 LLISPPDSAENLLSMVNTLTKSGSMDVIVVDSVAALVPQHELDVVIGGTYQDVQSQIMAQ 237

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGS---PETTTGGNALKFYSSVRLDIRRVGS 238
           ALRK+  S+ RS+ +++F+NQ+R  +    G     E T GGNAL+FY++VRL + R G 
Sbjct: 238 ALRKIHYSLCRSETLIIFVNQVRSSLKSSHGFGRLDEVTCGGNALRFYAAVRLRVMRTGL 297

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           ++ +D +TG    V+VVKNK+A   K+ +  I +G GI F  E+++L  +  ++ K G+ 
Sbjct: 298 LRTEDKVTGLGVCVQVVKNKLAHATKKADLGIQFGRGICFESEVLELACEHGVIWKEGSK 357

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
           +  +G+     ++ ++ ++ +N  + E I S LR + 
Sbjct: 358 YIIEGEAF-NNKQEAEQYMAQNSGVLERIVSFLRSHL 393


>gi|23194263|gb|AAN15079.1| RecA protein [Vibrio cholerae]
 gi|99029089|gb|ABF60832.1| RecA [Vibrio cholerae]
 gi|99029091|gb|ABF60833.1| RecA [Vibrio cholerae]
 gi|99029093|gb|ABF60834.1| RecA [Vibrio cholerae]
 gi|99029095|gb|ABF60835.1| RecA [Vibrio cholerae]
 gi|99029097|gb|ABF60836.1| RecA [Vibrio cholerae]
 gi|99029099|gb|ABF60837.1| RecA [Vibrio cholerae]
 gi|99029101|gb|ABF60838.1| RecA [Vibrio cholerae]
 gi|99029103|gb|ABF60839.1| RecA [Vibrio cholerae]
 gi|99029105|gb|ABF60840.1| RecA [Vibrio cholerae]
 gi|99029107|gb|ABF60841.1| RecA [Vibrio cholerae]
 gi|99029109|gb|ABF60842.1| RecA [Vibrio cholerae]
 gi|99029111|gb|ABF60843.1| RecA [Vibrio cholerae]
 gi|99029113|gb|ABF60844.1| RecA [Vibrio cholerae]
 gi|99029115|gb|ABF60845.1| RecA [Vibrio cholerae]
 gi|99029117|gb|ABF60846.1| RecA [Vibrio cholerae]
 gi|99029119|gb|ABF60847.1| RecA [Vibrio cholerae]
 gi|99029121|gb|ABF60848.1| RecA [Vibrio cholerae]
 gi|99029123|gb|ABF60849.1| RecA [Vibrio cholerae]
 gi|99029125|gb|ABF60850.1| RecA [Vibrio cholerae]
 gi|99029127|gb|ABF60851.1| RecA [Vibrio cholerae]
          Length = 243

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 169/243 (69%), Positives = 208/243 (85%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           L LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA
Sbjct: 1   LSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           +KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  
Sbjct: 61  KKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHM 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD
Sbjct: 121 GLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 180

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           IRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V
Sbjct: 181 IRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMV 240

Query: 293 DKS 295
           +KS
Sbjct: 241 EKS 243


>gi|157493221|gb|ABV57976.1| RecA [Vibrio cholerae]
          Length = 243

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 164/239 (68%), Positives = 204/239 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DA
Sbjct: 5   DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDA 64

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEI
Sbjct: 65  EHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEI 124

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 125 EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNAL 184

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           KFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GEL
Sbjct: 185 KFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGEL 243


>gi|168362252|ref|ZP_02695431.1| protein RecA [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|209554392|ref|YP_002284503.1| recombinase A [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
 gi|226726298|sp|B5ZAR3|RECA_UREU1 RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|171903226|gb|EDT49515.1| protein RecA [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|209541893|gb|ACI60122.1| protein RecA [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
          Length = 333

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 134/324 (41%), Positives = 205/324 (63%), Gaps = 3/324 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   DK + L+  ++ ++  + K       +     E +  +S+GS+ +D   GI G P 
Sbjct: 1   MKENDKLEKLDP-IATLEAKFAKSTY--FIADEIKNEKVSAISTGSIHIDQITGINGIPV 57

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           G+I EIYG ESSGKTT+AL TIA+ QK GGT   +D E + D  YA+ L VDL  L+I+Q
Sbjct: 58  GKITEIYGNESSGKTTIALQTIAECQKKGGTAVLLDLEGSFDLNYAKSLKVDLTKLIITQ 117

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P TGEQA ++ + L+++ ++D+IV+DSVAA+ P +E + +M E+L G  ARLMS+ LRK+
Sbjct: 118 PQTGEQAFDMIETLIKTNSIDLIVVDSVAAMIPESEYQANMSEALMGAHARLMSKGLRKI 177

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
              +++S+  ++FINQ+R KI   FG+PE TTGG ALKFY+S+R++ R+   IK+  +  
Sbjct: 178 QPLMNKSQTAIIFINQLREKINTFFGNPEMTTGGKALKFYASLRIETRKADLIKEGINKI 237

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T+V  VKNK+A P +    D+ +G G  +  E+ID  ++  I+ K+G+WF F   ++
Sbjct: 238 GIKTKVTTVKNKLAPPLQTCFIDVFFGHGFDYDNEIIDFAIQYGILKKNGSWFYFDDNKI 297

Query: 307 GQGRENSKIFLRENIEIAENIESL 330
           GQGRE  K  L +N E+   +   
Sbjct: 298 GQGREQLKNTLLKNNELFTQVSEK 321


>gi|162286671|gb|ABX83446.1| RecA [Acidovorax facilis]
          Length = 243

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 185/242 (76%), Positives = 216/242 (89%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGTCAFVD
Sbjct: 2   EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKQGGTCAFVD 61

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA+KLGV L +LLISQPDTGEQALEI D LVRSGAVD+IVIDSVAALTP+AE
Sbjct: 62  AEHALDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVIDSVAALTPKAE 121

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           IEG+MG++LPG+QARLMSQALRKLT++I ++ C+++FINQ+RMKIGVMFGSPETTTGGNA
Sbjct: 122 IEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNA 181

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           LKFY+SVRLDIRR G+IK  D   GN+T+VKVVKNK++ PFK  EFDI++GEGIS  GE+
Sbjct: 182 LKFYASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEI 241

Query: 283 ID 284
           ID
Sbjct: 242 ID 243


>gi|145577847|gb|ABP87374.1| RecA [Vibrio ruber]
          Length = 233

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 164/235 (69%), Positives = 203/235 (86%), Gaps = 2/235 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD +YA+KLGVD++ LL+SQPDTGEQALEI D L RSGA+D
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPVYAKKLGVDIEALLVSQPDTGEQALEICDALARSGAID 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           GVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+P
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAP 233


>gi|190411101|gb|ACE78305.1| RecA [Vibrio parahaemolyticus]
 gi|190411103|gb|ACE78306.1| RecA [Vibrio parahaemolyticus]
 gi|190411105|gb|ACE78307.1| RecA [Vibrio parahaemolyticus]
 gi|190411107|gb|ACE78308.1| RecA [Vibrio parahaemolyticus]
 gi|190411109|gb|ACE78309.1| RecA [Vibrio parahaemolyticus]
 gi|190411111|gb|ACE78310.1| RecA [Vibrio parahaemolyticus]
          Length = 242

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 163/237 (68%), Positives = 202/237 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DA
Sbjct: 6   DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDA 65

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEI
Sbjct: 66  EHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEI 125

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 126 EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNAL 185

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           KFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IMYG+G +  G
Sbjct: 186 KFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREG 242


>gi|148793404|gb|ABR12766.1| recombinase A [Photobacterium angustum]
          Length = 236

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 170/236 (72%), Positives = 205/236 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L TIA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLETIAAAQRKGKTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+M
Sbjct: 61  DPIYAQKLGVDIDQLLVSQPDTGEQALEICDALARSGAVDLIVVDSVAALTPKAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GELI
Sbjct: 181 SVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKQAETQILYGQGFNRNGELI 236


>gi|52630823|gb|AAU84879.1| RecA [Burkholderia sp. R701]
          Length = 237

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 178/237 (75%), Positives = 211/237 (89%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHA
Sbjct: 1   VVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+
Sbjct: 61  LDIQYAAKLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY
Sbjct: 121 MGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFY 180

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           +SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A PF++  FDI+YGEGIS  GE+I
Sbjct: 181 ASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPPFREAIFDILYGEGISRQGEVI 237


>gi|167972403|ref|ZP_02554680.1| protein RecA [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|167974935|ref|ZP_02557212.1| protein RecA [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|167975176|ref|ZP_02557453.1| protein RecA [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|167989091|ref|ZP_02570762.1| protein RecA [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|195867372|ref|ZP_03079376.1| protein RecA [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|198273516|ref|ZP_03206052.1| protein RecA [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|225551153|ref|ZP_03772099.1| protein RecA [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|184209338|gb|EDU06381.1| protein RecA [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188018696|gb|EDU56736.1| protein RecA [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188997690|gb|EDU66787.1| protein RecA [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|195659996|gb|EDX53376.1| protein RecA [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|195660848|gb|EDX54101.1| protein RecA [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|198250036|gb|EDY74816.1| protein RecA [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|225378968|gb|EEH01333.1| protein RecA [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
          Length = 333

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 134/324 (41%), Positives = 205/324 (63%), Gaps = 3/324 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   DK + L+  ++ ++  + K       +     E +  +S+GS+ +D   GI G P 
Sbjct: 1   MKENDKLEKLDP-IATLEAKFAKSTY--FIADEIKNEKVSAISTGSIHIDQITGINGIPV 57

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           G+I EIYG ESSGKTT+AL TIA+ QK GGT   +D E + D  YA+ L VDL  L+I+Q
Sbjct: 58  GKITEIYGNESSGKTTIALQTIAECQKKGGTAVLLDLEGSFDLNYAKSLKVDLTKLIITQ 117

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P TGEQA ++ + L+++ ++D+IV+DSVAA+ P +E + +M E+L G  ARLMS+ LRK+
Sbjct: 118 PQTGEQAFDMIETLIKTNSIDLIVVDSVAAMIPESEYQANMSEALMGAHARLMSKGLRKI 177

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
              +++S+  ++FINQ+R KI   FG+PE TTGG ALKFY+S+R++ R+   IK+  +  
Sbjct: 178 QPLMNKSQTAIIFINQLREKINAFFGNPEMTTGGKALKFYASLRIETRKADLIKEGINKI 237

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T+V  VKNK+A P +    D+ +G G  +  E+ID  ++  I+ K+G+WF F   ++
Sbjct: 238 GIKTKVTTVKNKLAPPLQTCFIDVFFGHGFDYDNEIIDFAIQYGILKKNGSWFYFDDNKI 297

Query: 307 GQGRENSKIFLRENIEIAENIESL 330
           GQGRE  K  L +N E+   +   
Sbjct: 298 GQGREQLKNTLLKNNELFTQVSEK 321


>gi|157493217|gb|ABV57974.1| RecA [Vibrio cholerae]
          Length = 238

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 164/238 (68%), Positives = 204/238 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 1   VETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE
Sbjct: 61  HALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 121 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 180

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           FY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GEL
Sbjct: 181 FYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGEL 238


>gi|225550735|ref|ZP_03771684.1| protein RecA [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
 gi|225379889|gb|EEH02251.1| protein RecA [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
          Length = 333

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 134/324 (41%), Positives = 205/324 (63%), Gaps = 3/324 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   DK + L+  ++ ++  + K       +     E +  +S+GS+ +D   GI G P 
Sbjct: 1   MKENDKLEKLDP-IATLEAKFAKSTY--FIADEIKNEKVSAISTGSIHIDQITGINGIPV 57

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           G+I EIYG ESSGKTT+AL TIA+ QK GGT   +D E + D  YA+ L VDL  L+I+Q
Sbjct: 58  GKITEIYGNESSGKTTIALQTIAECQKKGGTAVLLDLEGSFDLNYAKSLKVDLTKLIITQ 117

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P TGEQA ++ + L+++ ++D+IV+DSVAA+ P +E + +M E+L G  ARLMS+ LRK+
Sbjct: 118 PQTGEQAFDMIETLIKTNSIDLIVVDSVAAMIPESEYQANMSEALMGAHARLMSKGLRKI 177

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
              +++S+  ++FINQ+R KI   FG+PE TTGG ALKFY+S+R++ R+   IK+  +  
Sbjct: 178 QPLMNKSQTAIIFINQLREKINTFFGNPEMTTGGKALKFYASLRIETRKADLIKEGINKI 237

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306
           G +T+V  VKNK+A P +    D+ +G G  +  E+ID  ++  I+ K+G+WF F   ++
Sbjct: 238 GIKTKVTTVKNKLAPPLQTCLIDVFFGHGFDYDNEIIDFAIQYGILKKNGSWFYFDDNKI 297

Query: 307 GQGRENSKIFLRENIEIAENIESL 330
           GQGRE  K  L +N E+   +   
Sbjct: 298 GQGREQLKNTLLKNNELFTQVSEK 321


>gi|30266983|gb|AAP21600.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum]
          Length = 245

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 168/244 (68%), Positives = 204/244 (83%), Gaps = 2/244 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 2   KGFIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 60  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 120 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A  FKQ EF
Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEELVGSETRVKVVKNKVAHRFKQAEF 239

Query: 269 DIMY 272
            IMY
Sbjct: 240 QIMY 243


>gi|295848051|gb|ADG44937.1| recombinase A [Vibrio cholerae]
          Length = 241

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 167/241 (69%), Positives = 207/241 (85%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           A+G GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   AVGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGA
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGA 240

Query: 298 W 298
           W
Sbjct: 241 W 241


>gi|157493219|gb|ABV57975.1| RecA [Vibrio cholerae]
          Length = 238

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 166/238 (69%), Positives = 205/238 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+M
Sbjct: 61  DPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDL
Sbjct: 181 SVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDL 238


>gi|289524800|emb|CBJ94456.1| recA protein [Vibrio sp. Rd 16.2]
          Length = 238

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 168/237 (70%), Positives = 206/237 (86%)

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVE+YGPESSGKTTL L  IA +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQ
Sbjct: 2   GRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFIDAEHALDPIYAQKLGVDIDALLVSQ 61

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKL
Sbjct: 62  PDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKL 121

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + 
Sbjct: 122 TGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVV 181

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
           GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GELIDLGVK  +V+K+GAW+S+ G
Sbjct: 182 GNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKNKLVEKAGAWYSYNG 238


>gi|169742986|gb|ACA66116.1| recombinase A [Geobacillus thermoleovorans]
 gi|169742988|gb|ACA66117.1| recombinase A [Geobacillus thermocatenulatus]
 gi|169742990|gb|ACA66118.1| recombinase A [Geobacillus stearothermophilus ATCC 7953]
 gi|169742992|gb|ACA66119.1| recombinase A [Geobacillus kaustophilus]
 gi|169742996|gb|ACA66121.1| recombinase A [Bacillus caldolyticus]
 gi|169742998|gb|ACA66122.1| recombinase A [Bacillus caldotenax]
 gi|169743000|gb|ACA66123.1| recombinase A [Bacillus caldovelox]
 gi|169743004|gb|ACA66125.1| recombinase A [Geobacillus vulcani]
          Length = 241

 Score =  243 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 167/243 (68%), Positives = 204/243 (83%), Gaps = 2/243 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG Q  +   + VV SGSL LDIALG+GG+P+GRIVEIYGPESSGKTT+ALH IA+ Q
Sbjct: 1   MKLGEQ--VDRKVSVVPSGSLALDIALGVGGYPRGRIVEIYGPESSGKTTVALHAIAEVQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG  AF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI + LVRSGAVDIIVID
Sbjct: 59  KRGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEG+MG++  G+QARLMSQALRKL+ +I++SK I +FINQ+R K+GVMFG
Sbjct: 119 SVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETT GG ALKFY+SVRL++RR   IK  + + GN+T++KVVKNK+A PFK  + DIMY
Sbjct: 179 NPETTPGGRALKFYASVRLEVRRAEQIKQGNDMVGNKTKIKVVKNKVAPPFKTADVDIMY 238

Query: 273 GEG 275
           GEG
Sbjct: 239 GEG 241


>gi|148793408|gb|ABR12768.1| recombinase A [Photobacterium leiognathi]
          Length = 236

 Score =  243 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 168/236 (71%), Positives = 205/236 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L TIA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLETIAAAQRKGKTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+M
Sbjct: 61  DPIYAQKLGVDIDQLLVSQPDTGEQALEICDALARSGAVDLIVVDSVAALTPKAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ +  I+YG+G +  GEL+
Sbjct: 181 SVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKQADTQILYGQGFNRNGELV 236


>gi|315139109|gb|ADT80763.1| recombinase A [Dickeya sp. C01]
          Length = 237

 Score =  243 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 167/239 (69%), Positives = 204/239 (85%), Gaps = 2/239 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG   S+   +E +S+GSL LDIALG+GG P GRIVEIYGPESSGKTTL L  IA +
Sbjct: 1   IMRLGEDRSM--DVETISTGSLSLDIALGVGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++
Sbjct: 59  QREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIV 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMF
Sbjct: 119 DSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           G+PETTTGGNALKFY+SVRLDIRR+GSIK+ + + G++TRVKVVKNK+A+PFKQ EF I
Sbjct: 179 GNPETTTGGNALKFYASVRLDIRRIGSIKEGEEVVGSETRVKVVKNKVAAPFKQAEFQI 237


>gi|30266947|gb|AAP21582.1| recombinase A [Erwinia mallotivora]
          Length = 239

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 165/241 (68%), Positives = 204/241 (84%), Gaps = 2/241 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I+
Sbjct: 59  AQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVII 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSETRVKVVKNKVAAPFKQAEVQI 238

Query: 271 M 271
           M
Sbjct: 239 M 239


>gi|169742994|gb|ACA66120.1| recombinase A [Geobacillus thermodenitrificans]
          Length = 241

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 166/243 (68%), Positives = 202/243 (83%), Gaps = 2/243 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG Q      I  V SGSL LDIALG+GG+P+GRI+EIYGPESSGKTT+ALH IA+ Q
Sbjct: 1   MKLGEQAE--RQISTVPSGSLALDIALGVGGYPRGRIIEIYGPESSGKTTVALHAIAEVQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG  AF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI + LVRSGAVDIIVID
Sbjct: 59  KQGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEG+MG++  G+QARLMSQALRKL+ +I++SK I +FINQ+R K+GVMFG
Sbjct: 119 SVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETT GG ALKFY+SVRL++RR   IK  + + GN+T++KVVKNK+A PFK  + DIMY
Sbjct: 179 NPETTPGGRALKFYASVRLEVRRAEQIKQGNDMVGNKTKIKVVKNKVAPPFKTADVDIMY 238

Query: 273 GEG 275
           GEG
Sbjct: 239 GEG 241


>gi|237757134|ref|ZP_04585566.1| protein RecA [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237690701|gb|EEP59877.1| protein RecA [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 285

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 156/279 (55%), Positives = 217/279 (77%), Gaps = 6/279 (2%)

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           GIGG PKGR++EIYGPESSGKTTL LH IA++QK GG   F+DAEHA D  YA+ +GV+L
Sbjct: 2   GIGGVPKGRVIEIYGPESSGKTTLTLHIIAEAQKKGGRAVFIDAEHAFDPKYAKAIGVNL 61

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
             L+ISQPD GEQA+EI + LVRS AVD+IVIDSVAAL P+AEIEGD+ +S  G+ ARLM
Sbjct: 62  DELIISQPDYGEQAIEIAETLVRSNAVDVIVIDSVAALVPKAEIEGDIEDSNVGLHARLM 121

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           S+A+R L  ++++S   L+ INQ+R K+GVMFG+PETTTGG A+KF++ +R+++R+   I
Sbjct: 122 SKAMRVLKGAVNKSNTALILINQIREKVGVMFGNPETTTGGRAIKFFADMRMEVRKSD-I 180

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           K      G++ +VKVVKNK+A PFK+ EFD++YGEGIS  GE++DLG +  I+ KSGAW+
Sbjct: 181 KTDGEKVGSRVKVKVVKNKLAPPFKEAEFDVIYGEGISKEGEILDLGEELGIIKKSGAWY 240

Query: 300 SFKGQ-----RLGQGRENSKIFLRENIEIAENIESLLRQ 333
           S++ +     +LGQG+E ++ FL++N E+ E +E ++++
Sbjct: 241 SYRDENGEEIKLGQGKEKAREFLKQNKELTEKLEQIIKE 279


>gi|315021919|gb|ADT70827.1| recombinase A [Pectobacterium carotovorum]
 gi|315021923|gb|ADT70829.1| recombinase A [Pectobacterium carotovorum]
          Length = 239

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 167/241 (69%), Positives = 204/241 (84%), Gaps = 2/241 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q
Sbjct: 1   MRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           + G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++D
Sbjct: 59  REGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVD 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIGVMFG
Sbjct: 119 SVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF IMY
Sbjct: 179 NPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEFQIMY 238

Query: 273 G 273
           G
Sbjct: 239 G 239


>gi|56181891|gb|AAV83926.1| RecA [Burkholderia cepacia]
          Length = 239

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 177/240 (73%), Positives = 210/240 (87%), Gaps = 1/240 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           ++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK
Sbjct: 1   RMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQK 59

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDS
Sbjct: 60  LGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDS 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           VAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+
Sbjct: 120 VAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGN 179

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YG
Sbjct: 180 PETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYG 239


>gi|157493223|gb|ABV57977.1| RecA [Vibrio cholerae]
          Length = 237

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 163/237 (68%), Positives = 203/237 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAE
Sbjct: 1   VETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE
Sbjct: 61  HALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 121 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 180

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE 281
           FY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GE
Sbjct: 181 FYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGE 237


>gi|162286675|gb|ABX83448.1| RecA [Acidovorax temperans]
          Length = 239

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 181/239 (75%), Positives = 213/239 (89%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           +VVS+GSLGLDIALG+GG P+GR++EIYGPESSGKTTL L  IA+ QK GGTCAFVDAEH
Sbjct: 1   QVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTTLTLQVIAEMQKQGGTCAFVDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA+KLGV L +LLISQPDTGEQALEI D LVRSGAVD+IV+DSVAALTP+AEIEG
Sbjct: 61  ALDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAALTPKAEIEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +MG++LPG+QARLMSQALRKLT++I ++ C ++FINQ+RMKIGVMFGSPETTTGGNALKF
Sbjct: 121 EMGDALPGLQARLMSQALRKLTATIKKTNCTVIFINQIRMKIGVMFGSPETTTGGNALKF 180

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           Y+SVRLDIRR G+IK  D   GN+T+VKVVKNK++ PFK  EFDI++GEGIS  GE+ID
Sbjct: 181 YASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIID 239


>gi|162286679|gb|ABX83450.1| RecA [Verminephrobacter eiseniae]
          Length = 239

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 185/238 (77%), Positives = 214/238 (89%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTLAL  IA+ QK GGTCAFVDAEHA
Sbjct: 2   VVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLALQVIAEMQKQGGTCAFVDAEHA 61

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YA+KLGV L +LLISQPDTGEQALEI D LVRSGAVD+IV+DSVAALTP+AEIEGD
Sbjct: 62  LDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAALTPKAEIEGD 121

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG++LPG+QARLMSQALRKLT++I ++ C++VFINQ+RMKIGVMFGSPETTTGGNALKFY
Sbjct: 122 MGDALPGLQARLMSQALRKLTATIKKTNCMVVFINQIRMKIGVMFGSPETTTGGNALKFY 181

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           +SVRLDIRR G+IK  D   GN+T+VKVVKNK++ PFK  EFDI++GEGIS  GE+ID
Sbjct: 182 ASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIID 239


>gi|162286669|gb|ABX83445.1| RecA [Acidovorax delafieldii]
          Length = 239

 Score =  242 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 182/239 (76%), Positives = 214/239 (89%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           +VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGTCAFVDAEH
Sbjct: 1   QVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKQGGTCAFVDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA+KLGV L +LLISQPDTGEQALEI D LVRSGAVD+IV+DSVAALTP+AEIEG
Sbjct: 61  ALDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAALTPKAEIEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +MG++LPG+QARLMSQALRKLT++I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKF
Sbjct: 121 EMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKF 180

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           Y+SVRLDIRR G+IK  D   GN+T+VKVVKNK++ PFK  EFDI++GEGIS  GE+ID
Sbjct: 181 YASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIID 239


>gi|30266981|gb|AAP21599.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum]
          Length = 242

 Score =  242 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 166/244 (68%), Positives = 202/244 (82%), Gaps = 2/244 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   S+   +E +S+GSL LDIA G GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRLGEDRSM--DVETISTGSLSLDIAFGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G +TRVKVV NKM + FKQ EF
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEELVGIETRVKVVNNKMVARFKQAEF 238

Query: 269 DIMY 272
            IMY
Sbjct: 239 QIMY 242


>gi|162286685|gb|ABX83453.1| RecA [Acidovorax defluvii]
          Length = 239

 Score =  242 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 184/239 (76%), Positives = 214/239 (89%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           +VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGTCAFVDAEH
Sbjct: 1   QVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKQGGTCAFVDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA+KLGV L +LLISQPDTGEQALEI D LVRSGAVD+IVIDSVAALTP+AEIEG
Sbjct: 61  ALDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVIDSVAALTPKAEIEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +MG+SLPG+QARLMSQALRKLTS+I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKF
Sbjct: 121 EMGDSLPGLQARLMSQALRKLTSTIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKF 180

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           Y+SVRLDIRR G+IK  +   GN+T+VKVVKNK++ PFK  EFDI++GEGIS  GE+ID
Sbjct: 181 YASVRLDIRRTGTIKKGEEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIID 239


>gi|295848059|gb|ADG44941.1| recombinase A [Vibrio cholerae]
          Length = 239

 Score =  242 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 166/239 (69%), Positives = 205/239 (85%)

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           G GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++
Sbjct: 1   GAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNI 60

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
             LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++
Sbjct: 61  DELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARML 120

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+I
Sbjct: 121 SQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAI 180

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           K+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW
Sbjct: 181 KEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAW 239


>gi|295848055|gb|ADG44939.1| recombinase A [Vibrio cholerae]
          Length = 238

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 162/238 (68%), Positives = 204/238 (85%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KL V++  LL
Sbjct: 1   LPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLDVNIDELL 60

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+
Sbjct: 61  VSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAM 120

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ +
Sbjct: 121 RKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGE 180

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
            + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW+++
Sbjct: 181 EVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYTY 238


>gi|30266985|gb|AAP21601.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum]
          Length = 244

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 168/245 (68%), Positives = 203/245 (82%), Gaps = 2/245 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 2   KGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 60  ASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 120 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDI   G IK+ + + G +TRVKVVKNKMA+ FKQ EF
Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIPPTGPIKEGEELVGFETRVKVVKNKMAARFKQAEF 239

Query: 269 DIMYG 273
            IMYG
Sbjct: 240 QIMYG 244


>gi|179185055|gb|ACB78168.1| RecA [Vibrio sp. CECT 7224]
          Length = 239

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 167/240 (69%), Positives = 202/240 (84%), Gaps = 2/240 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +I +LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIRRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK G TCAFVDAEHALD IYA KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQKVGKTCAFVDAEHALDPIYAHKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238


>gi|315021915|gb|ADT70825.1| recombinase A [Pectobacterium wasabiae]
          Length = 236

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 165/238 (69%), Positives = 201/238 (84%), Gaps = 2/238 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +
Sbjct: 1   IMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++
Sbjct: 59  QREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIV 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIGVMF
Sbjct: 119 DSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           G+PETTTGGNALKFY+SVRLDIRR G+IKD + + G++TRVKVVKNK+A+PFKQ EF 
Sbjct: 179 GNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVGSETRVKVVKNKVAAPFKQAEFQ 236


>gi|52630805|gb|AAU84870.1| RecA [Burkholderia sp. LMG 20580]
          Length = 240

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 179/240 (74%), Positives = 213/240 (88%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  
Sbjct: 1   GSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKIGGTAAFIDAEHALDIQ 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+S
Sbjct: 61  YAGKLGVNVNDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDS 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
           LPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR
Sbjct: 121 LPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVR 180

Query: 231 LDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS 290
           LDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A 
Sbjct: 181 LDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAK 240


>gi|162286681|gb|ABX83451.1| RecA [Verminephrobacter sp. LT02-1]
          Length = 239

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 181/239 (75%), Positives = 213/239 (89%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           +VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGTCAFVDAEH
Sbjct: 1   QVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKQGGTCAFVDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA+KLGV L +LLISQPDTGEQALEI D LVRSGAVD+I +DSVAALTP+AEIEG
Sbjct: 61  ALDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLVRSGAVDLIAVDSVAALTPKAEIEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +MG++LPG+QARLMSQALRKLT++I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKF
Sbjct: 121 EMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKF 180

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           Y+SVRLDIRR G+IK  D   GN+T+VKVVKNK++ PFK  EFDI++GEGIS  GE+ID
Sbjct: 181 YASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIID 239


>gi|6694825|gb|AAF25410.1|AF214763_1 RecA protein [Arthrobacter sp. 'SMCC G962']
          Length = 237

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 159/237 (67%), Positives = 196/237 (82%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGV
Sbjct: 1   ALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHALDPEYAAKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           D   LL+SQPDTGEQALEI DML+ SG++D+IVIDSVAAL PRAEIEGDMG+S  G+QAR
Sbjct: 61  DTDALLVSQPDTGEQALEIMDMLIGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           LMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ 
Sbjct: 121 LMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQ 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK 294
           ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS  G +ID+GV+  I+ K
Sbjct: 181 TLKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQGISREGGIIDMGVEHGIIKK 237


>gi|162286683|gb|ABX83452.1| RecA [Verminephrobacter sp. LT04-1]
          Length = 239

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 181/238 (76%), Positives = 213/238 (89%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGTCAFVDAEHA
Sbjct: 2   VVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKQGGTCAFVDAEHA 61

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YA+KLGV L +LLISQPDTGEQALEI D LVRSGAVD+IV+DSVAALTP+AEIEG+
Sbjct: 62  LDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAALTPKAEIEGE 121

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG++LPG+QARLMSQALRKLT++I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY
Sbjct: 122 MGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFY 181

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           +SVRLDIRR G+IK  D   GN+T+VKVVKNK++ PFK  EFDI++GEGIS  GE+ID
Sbjct: 182 ASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIID 239


>gi|324985138|gb|ADY69167.1| recombinase A repair protein [Vibrio neptunius]
          Length = 235

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 163/233 (69%), Positives = 200/233 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DA
Sbjct: 3   DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YA+KLGVD+  LL+SQPDTGEQALEI + L RSGA+D++V+DSVAALTP+AEI
Sbjct: 63  EHALDPVYAKKLGVDIDALLVSQPDTGEQALEICNALARSGAIDVMVVDSVAALTPKAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 123 EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNAL 182

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276
           KFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E  IMYG G 
Sbjct: 183 KFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQIMYGAGF 235


>gi|56181899|gb|AAV83930.1| RecA [Burkholderia cepacia]
          Length = 240

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 181/240 (75%), Positives = 213/240 (88%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           GLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA 
Sbjct: 1   GLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAS 60

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
           KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG
Sbjct: 61  KLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPG 120

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
           +QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDI
Sbjct: 121 LQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDI 180

Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVD 293
           RR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVD
Sbjct: 181 RRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVD 240


>gi|169743002|gb|ACA66124.1| recombinase A [Geobacillus lituanicus]
          Length = 241

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 165/242 (68%), Positives = 202/242 (83%), Gaps = 2/242 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG Q  +   + VV SGSL LDIALG+GG+P+GRIVEIYGPESSGKTT+ALH IA+ Q
Sbjct: 1   MKLGEQ--VDRKVSVVPSGSLALDIALGVGGYPRGRIVEIYGPESSGKTTVALHAIAEVQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG  AF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI + LVRSGAVDIIVID
Sbjct: 59  KRGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEG+MG++  G+QARLMSQALRKL+ +I++SK I +FINQ+R K+GVMFG
Sbjct: 119 SVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETT GG ALKFY+SVRL++RR   IK  + + GN+T++KVVKNK+A PFK  + DIMY
Sbjct: 179 NPETTPGGRALKFYASVRLEVRRAEQIKQGNDMVGNKTKIKVVKNKVAPPFKTADVDIMY 238

Query: 273 GE 274
           G 
Sbjct: 239 GR 240


>gi|324985140|gb|ADY69168.1| recombinase A repair protein [Photobacterium halotolerans]
          Length = 238

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 167/233 (71%), Positives = 202/233 (86%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L TIA +Q+ G TCAF+DA
Sbjct: 6   DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLETIAAAQRKGKTCAFIDA 65

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEI
Sbjct: 66  EHALDPIYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDLIVVDSVAALTPKAEI 125

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 126 EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNAL 185

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276
           KFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ E  I+YG+G 
Sbjct: 186 KFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKVAAPFKQAETQILYGQGF 238


>gi|255708543|gb|ACU30177.1| RecA [Burkholderia cepacia]
          Length = 225

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 162/225 (72%), Positives = 199/225 (88%)

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD  YA KLGV++  LLI QPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEI
Sbjct: 1   EHALDVQYASKLGVNVPELLILQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEI 60

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 61  EGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNAL 120

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+I
Sbjct: 121 KFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEII 180

Query: 284 DLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           DLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA  IE
Sbjct: 181 DLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 225


>gi|30142061|gb|AAP13813.1| recombinase A subunit [Brenneria salicis ATCC 15712]
          Length = 234

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 163/236 (69%), Positives = 201/236 (85%), Gaps = 2/236 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG      + +E++S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGEDRP--KDVEIISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKI
Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           GVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D + G++TRVKVVKNK+A+P 
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEVVGSETRVKVVKNKVAAPC 234


>gi|225441937|ref|XP_002278976.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 389

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 134/337 (39%), Positives = 222/337 (65%), Gaps = 5/337 (1%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +Y  ++   +K  AL  A+S++   +G+ +++ L  +  +     V+S+GSL LD+ALGI
Sbjct: 50  EYGNDVKAAEKDTALRLAISRLAGDFGRESMLSL-QRFFVSRHAPVISTGSLKLDLALGI 108

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG PKGRIVEIYG E+SGKTTLALH I ++QK GG CA++D E+A++  +A  +GV++ N
Sbjct: 109 GGLPKGRIVEIYGQEASGKTTLALHIIKEAQKLGGYCAYLDVENAMNPSFAESMGVNVDN 168

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLIS PD+ E  L + + L +SG++D+IV+DSVAAL P+ E++  +G +   +Q+++M+Q
Sbjct: 169 LLISPPDSAENLLSMVNTLTKSGSMDVIVVDSVAALVPQHELDVVIGGTYQDVQSQIMAQ 228

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGS---PETTTGGNALKFYSSVRLDIRRVGS 238
           ALRK+  S+ RS+ +++F+NQ+R  +    G     E T GGNAL+FY++VRL + R G 
Sbjct: 229 ALRKIHYSLCRSETLIIFVNQVRSSLKSSHGFGRLDEVTCGGNALRFYAAVRLRVMRTGL 288

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           ++ +D +TG    V+VVKNK+A   K+ +  I +G GI F  E+++L  +  ++ K G+ 
Sbjct: 289 LRTEDKVTGLGVCVQVVKNKLAHATKKADLGIQFGRGICFESEVLELACEHGVIWKEGSK 348

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
           +  +G+     ++ ++ ++ +N  + E I S LR + 
Sbjct: 349 YIIEGEAF-NNKQEAEQYMAQNSGVLERIVSFLRSHL 384


>gi|31544676|ref|NP_853254.1| Recombinase A [Mycoplasma gallisepticum str. R(low)]
 gi|19338634|gb|AAL86741.1|AF443795_1 RecA [Mycoplasma gallisepticum str. R]
 gi|31541522|gb|AAP56822.1| RecA (Recombinase A) [Mycoplasma gallisepticum str. R(low)]
 gi|284930739|gb|ADC30678.1| RecA (Recombinase A) [Mycoplasma gallisepticum str. R(high)]
 gi|284931355|gb|ADC31293.1| RecA (Recombinase A) [Mycoplasma gallisepticum str. F]
          Length = 351

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 143/344 (41%), Positives = 215/344 (62%), Gaps = 12/344 (3%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQ---------RVYGKGAIMQLGSQGSIFEGIEVVSSGS 52
           +Y K MN +  SK     ++ I          + +GK  I    ++    + +E +S+GS
Sbjct: 6   NYDKIMNNIKNSKRNNDRITNITNYDVLKLLQQKFGKTNIYL--NEKDELKDLEAISTGS 63

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           + LD ALG  GF KGRIVEIYG ES GKTTLAL TI Q+       AF+DAEHALD  Y 
Sbjct: 64  IKLDHALGTDGFIKGRIVEIYGNESCGKTTLALSTIKQAIDRNMRVAFIDAEHALDLRYV 123

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           ++LG+DL  L+I++PD GEQ  EI   L+++  +D+IV+DSVAAL P+ EIEG M +   
Sbjct: 124 KRLGIDLTKLIIARPDYGEQGFEIIKSLIKTELIDLIVVDSVAALVPKVEIEGKMEDQTM 183

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G  AR+MS+ L ++   +++    ++FINQ+R K+G+MFG+PE TTGG ALKFYSS RL+
Sbjct: 184 GTHARMMSRGLSRIQPLLAKHNVSVIFINQLREKVGIMFGNPEVTTGGKALKFYSSTRLE 243

Query: 233 IRRVGSIKD-KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASI 291
           +RR   IKD  ++  G +++  + KNK+++P      D  +  GIS   E+IDL +   I
Sbjct: 244 LRRAEIIKDAANNAIGIRSKATITKNKLSTPMTTTYIDFYFKSGISEVNEIIDLAIDYQI 303

Query: 292 VDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
           +++SG+WFS++ +++ QG+ N    L E+ E+ + I++ +    
Sbjct: 304 IEQSGSWFSYQKEKIAQGKANLITKLGESEELYKLIKTEVLNKL 347


>gi|162286677|gb|ABX83449.1| RecA [Acidovorax valerianellae]
          Length = 238

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 183/238 (76%), Positives = 212/238 (89%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GG CAFVDAEHA
Sbjct: 1   VVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKQGGQCAFVDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YA+KLGV L +LLISQPDTGEQALEI D LVRSGAVD+IVIDSVAALTP+AEIEG+
Sbjct: 61  LDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVIDSVAALTPKAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+SLPG+QARLMSQALRKLT++I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY
Sbjct: 121 MGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFY 180

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           +SVRLDIRR G+IK  D   GN+T+VKVVKNK++ PFK  EFDI++GEGIS  GE+ID
Sbjct: 181 ASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIID 238


>gi|290795145|gb|ADD64587.1| RecA recombinase [Vibrio splendidus]
          Length = 226

 Score =  240 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 160/228 (70%), Positives = 195/228 (85%), Gaps = 2/228 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D
Sbjct: 59  IAAAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAID 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           GVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVV
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVV 226


>gi|119514640|gb|ABL76132.1| RecA [Listeria monocytogenes]
 gi|119514642|gb|ABL76133.1| RecA [Listeria monocytogenes]
 gi|119514644|gb|ABL76134.1| RecA [Listeria monocytogenes]
 gi|119514646|gb|ABL76135.1| RecA [Listeria monocytogenes]
 gi|119514648|gb|ABL76136.1| RecA [Listeria monocytogenes]
 gi|119514650|gb|ABL76137.1| RecA [Listeria monocytogenes]
 gi|119514652|gb|ABL76138.1| RecA [Listeria monocytogenes]
 gi|119514654|gb|ABL76139.1| RecA [Listeria monocytogenes]
 gi|119514656|gb|ABL76140.1| RecA [Listeria monocytogenes]
 gi|119514658|gb|ABL76141.1| RecA [Listeria monocytogenes 690]
 gi|119514660|gb|ABL76142.1| RecA [Listeria monocytogenes]
 gi|119514662|gb|ABL76143.1| RecA [Listeria monocytogenes]
 gi|119514664|gb|ABL76144.1| RecA [Listeria monocytogenes]
 gi|119514666|gb|ABL76145.1| RecA [Listeria monocytogenes]
 gi|119514668|gb|ABL76146.1| RecA [Listeria monocytogenes]
 gi|119514670|gb|ABL76147.1| RecA [Listeria monocytogenes]
 gi|119514672|gb|ABL76148.1| RecA [Listeria monocytogenes]
 gi|119514674|gb|ABL76149.1| RecA [Listeria monocytogenes]
 gi|119514676|gb|ABL76150.1| RecA [Listeria monocytogenes]
 gi|119514678|gb|ABL76151.1| RecA [Listeria monocytogenes]
 gi|119514680|gb|ABL76152.1| RecA [Listeria monocytogenes]
          Length = 226

 Score =  240 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 147/228 (64%), Positives = 186/228 (81%), Gaps = 2/228 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +R K+GVMFG+PE T GG ALKFYS+VRL++RR   +K    + GN+T
Sbjct: 179 IREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT 226


>gi|23194265|gb|AAN15080.1| RecA protein [Vibrio cholerae]
          Length = 240

 Score =  240 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 167/240 (69%), Positives = 206/240 (85%)

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
           IALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLG
Sbjct: 1   IALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLG 60

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           V++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QA
Sbjct: 61  VNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQA 120

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           R++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR 
Sbjct: 121 RMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRT 180

Query: 237 GSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
           G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSG
Sbjct: 181 GAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSG 240


>gi|267798479|gb|ACY78920.1| recombinase A [Vibrio cholerae]
          Length = 224

 Score =  240 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 153/226 (67%), Positives = 192/226 (84%), Gaps = 2/226 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L
Sbjct: 1   QFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTL 58

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGA
Sbjct: 59  ELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGA 118

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           VD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RM
Sbjct: 119 VDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRM 178

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           KIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR
Sbjct: 179 KIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEDVVGNETR 224


>gi|23194275|gb|AAN15085.1| RecA protein [Vibrio cholerae]
          Length = 239

 Score =  240 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 167/239 (69%), Positives = 204/239 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +Y
Sbjct: 1   SLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S 
Sbjct: 61  AKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
            G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRL
Sbjct: 121 MGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRL 180

Query: 232 DIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS 290
           DIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  
Sbjct: 181 DIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHK 239


>gi|267798493|gb|ACY78927.1| recombinase A [Vibrio cholerae]
          Length = 224

 Score =  240 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 153/226 (67%), Positives = 192/226 (84%), Gaps = 2/226 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L
Sbjct: 1   QFGKGSIMRLGDNRAL--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTL 58

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGA
Sbjct: 59  ELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGA 118

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           VD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RM
Sbjct: 119 VDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRM 178

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           KIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR
Sbjct: 179 KIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETR 224


>gi|324985136|gb|ADY69166.1| recombinase A repair protein [Vibrio coralliilyticus]
          Length = 235

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 164/235 (69%), Positives = 200/235 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+M
Sbjct: 61  DPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QAR++SQA+RKLT ++ +S C+ + INQ+RMKIGVMFG+PETTTGGNALK Y+
Sbjct: 121 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIVINQIRMKIGVMFGNPETTTGGNALKLYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E  IMYG G +  GEL
Sbjct: 181 SVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQIMYGAGFNREGEL 235


>gi|324985142|gb|ADY69169.1| recombinase A repair protein [Vibrio coralliilyticus]
          Length = 231

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 163/231 (70%), Positives = 199/231 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+M
Sbjct: 61  DPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISF 278
           SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E  IMYG G + 
Sbjct: 181 SVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQIMYGAGFNR 231


>gi|6143863|gb|AAF04410.1|AC010927_3 putative RecA protein [Arabidopsis thaliana]
          Length = 389

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 134/333 (40%), Positives = 214/333 (64%), Gaps = 5/333 (1%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           +  + +K  AL  ALSQ+   + K + + L  +      + V+S+GSL LD+ALG+GG P
Sbjct: 56  DRKVAEKDTALHLALSQLSGDFDKDSKLSL-QRFYRKRRVSVISTGSLNLDLALGVGGLP 114

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR+VE+YG E+SGKTTLALH I ++QK GG CA++DAE+A+D   A  +GV+ + LLIS
Sbjct: 115 KGRMVEVYGKEASGKTTLALHIIKEAQKLGGYCAYLDAENAMDPSLAESIGVNTEELLIS 174

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           +P + E+ L I D+L +SG+VD+IV+DSVAAL P+ E++  +GE     Q+R+M+QALRK
Sbjct: 175 RPSSAEKMLNIVDVLTKSGSVDVIVVDSVAALAPQCELDAPVGERYRDTQSRIMTQALRK 234

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSP---ETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           +  S+  S+ ++VF+NQ+R  +      P   E T GGNAL F++++RL + R G IK  
Sbjct: 235 IHYSVGYSQTLIVFLNQVRSHVKSNMHFPHAEEVTCGGNALPFHAAIRLKMIRTGLIKTA 294

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           + + G    V+VVKNK+A   K+ E  I +G G     E+++L  +  ++ + G  +  +
Sbjct: 295 NKVYGLNVCVQVVKNKLAPGKKKSELGIHFGHGFYVEREVLELACEHGVILREGTSYFIE 354

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
           G+ + +G++ ++ +L EN E  + + ++LR   
Sbjct: 355 GEVI-EGKDAAEKYLVENKEALDTVVAILRNQL 386


>gi|267798501|gb|ACY78931.1| recombinase A [Vibrio cholerae]
          Length = 224

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 153/226 (67%), Positives = 191/226 (84%), Gaps = 2/226 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM+LG    +   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L
Sbjct: 1   QFGKGSIMRLGDNRPM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTL 58

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGA
Sbjct: 59  ELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGA 118

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           VD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RM
Sbjct: 119 VDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRM 178

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           KIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR
Sbjct: 179 KIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETR 224


>gi|267798477|gb|ACY78919.1| recombinase A [Vibrio cholerae]
 gi|267798481|gb|ACY78921.1| recombinase A [Vibrio cholerae]
 gi|267798483|gb|ACY78922.1| recombinase A [Vibrio cholerae]
 gi|267798485|gb|ACY78923.1| recombinase A [Vibrio cholerae]
 gi|267798487|gb|ACY78924.1| recombinase A [Vibrio cholerae]
 gi|267798489|gb|ACY78925.1| recombinase A [Vibrio cholerae]
 gi|267798491|gb|ACY78926.1| recombinase A [Vibrio cholerae]
 gi|267798495|gb|ACY78928.1| recombinase A [Vibrio cholerae]
 gi|267798497|gb|ACY78929.1| recombinase A [Vibrio cholerae]
 gi|267798499|gb|ACY78930.1| recombinase A [Vibrio cholerae]
 gi|267798503|gb|ACY78932.1| recombinase A [Vibrio cholerae]
 gi|267798505|gb|ACY78933.1| recombinase A [Vibrio cholerae]
 gi|267798507|gb|ACY78934.1| recombinase A [Vibrio cholerae]
 gi|267798509|gb|ACY78935.1| recombinase A [Vibrio cholerae]
          Length = 224

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 153/226 (67%), Positives = 192/226 (84%), Gaps = 2/226 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L
Sbjct: 1   QFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTL 58

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGA
Sbjct: 59  ELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGA 118

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           VD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RM
Sbjct: 119 VDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRM 178

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           KIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR
Sbjct: 179 KIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETR 224


>gi|315021927|gb|ADT70831.1| recombinase A [Pectobacterium wasabiae]
          Length = 235

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 164/237 (69%), Positives = 200/237 (84%), Gaps = 2/237 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q
Sbjct: 1   MRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           + G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++D
Sbjct: 59  REGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVD 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIGVMFG
Sbjct: 119 SVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           +PETTTGGNALKFY+SVRLDIRR G+IKD + + G++TRVKVVKNK+A+PFKQ EF 
Sbjct: 179 NPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVGSETRVKVVKNKVAAPFKQAEFQ 235


>gi|162286689|gb|ABX83455.1| RecA [Acidovorax avenae subsp. avenae]
          Length = 238

 Score =  238 bits (608), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 178/238 (74%), Positives = 212/238 (89%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           VVS+GSLGLD+ALG+GG P+GR++EIYGPESSGKTTL L  IA+ QK  GTCAFVDAEHA
Sbjct: 1   VVSTGSLGLDVALGVGGLPRGRVIEIYGPESSGKTTLTLQVIAEMQKQNGTCAFVDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YA+KLGV + +LLISQPDTGEQALEI D LVRSGAVD+IV+DSVAALTP+AEIEG+
Sbjct: 61  LDIQYAQKLGVHVPDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAALTPKAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG++LPG+QARLMSQALRKLT++I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY
Sbjct: 121 MGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFY 180

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           +SVRLDIRR G+IK  D   GN+T+VKVVKNK++ PFK  EFDI++GEGIS  GE+ID
Sbjct: 181 ASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIID 238


>gi|261419499|ref|YP_003253181.1| recA protein [Geobacillus sp. Y412MC61]
 gi|319766316|ref|YP_004131817.1| recA protein [Geobacillus sp. Y412MC52]
 gi|261375956|gb|ACX78699.1| recA protein [Geobacillus sp. Y412MC61]
 gi|317111182|gb|ADU93674.1| recA protein [Geobacillus sp. Y412MC52]
          Length = 277

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 130/216 (60%), Positives = 170/216 (78%)

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI + LVRSGAVDIIVIDSVAAL P+AEIEG+MG++  G+QARLMSQALRKL+ +I++S
Sbjct: 55  LEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLSGAINKS 114

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
           K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRL++RR   IK  + + GN+T++K
Sbjct: 115 KTIAIFINQIREKVGVMFGNPETTPGGRALKFYASVRLEVRRAEQIKQGNDMVGNKTKIK 174

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VVKNK+A PFK  + DIMYGEGIS  GE++D+  +  IV KSG+W+S+K +RLGQGREN+
Sbjct: 175 VVKNKVAPPFKTADVDIMYGEGISREGEILDMASELDIVQKSGSWYSYKDERLGQGRENA 234

Query: 314 KIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
           K FL+EN  IA+ I   +RQ+ G+  +    EP  +
Sbjct: 235 KQFLKENPHIADEIARAIRQHYGIDVEEGTSEPQQD 270


>gi|315021917|gb|ADT70826.1| recombinase A [Pectobacterium carotovorum]
 gi|315021929|gb|ADT70832.1| recombinase A [Pectobacterium carotovorum]
          Length = 237

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 165/239 (69%), Positives = 202/239 (84%), Gaps = 2/239 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q
Sbjct: 1   MRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           + G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++D
Sbjct: 59  REGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVD 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIGVMFG
Sbjct: 119 SVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           +PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF IM
Sbjct: 179 NPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEFQIM 237


>gi|162286673|gb|ABX83447.1| RecA [Acidovorax konjaci]
          Length = 239

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 179/238 (75%), Positives = 212/238 (89%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           VVS+GSLGLD+ALG+GG P+GR++EIYGPESSGKTTL L  IA+ QK  GTCAFVDAEHA
Sbjct: 2   VVSTGSLGLDVALGVGGLPRGRVIEIYGPESSGKTTLTLQVIAEMQKQNGTCAFVDAEHA 61

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YA+KLGV + +LLISQPDTGEQALEI D LVRSGAVD+IVIDSVAALTP+AEIEG+
Sbjct: 62  LDIQYAQKLGVHVPDLLISQPDTGEQALEIVDSLVRSGAVDLIVIDSVAALTPKAEIEGE 121

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG++LPG+QARLMSQALRKLT++I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY
Sbjct: 122 MGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFY 181

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           +SVRLDIRR G+IK  D   GN+T+VKVVKNK++ PFK  EFDI++GEGIS  GE+ID
Sbjct: 182 ASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIID 239


>gi|22330951|ref|NP_187625.2| RECA3 (recA homolog 3); ATP binding / DNA binding / DNA-dependent
           ATPase/ nucleoside-triphosphatase/ nucleotide binding
           [Arabidopsis thaliana]
 gi|75158993|sp|Q8RY99|RECAM_ARATH RecName: Full=DNA repair protein recA homolog 2, mitochondrial;
           AltName: Full=Recombinase A homolog 2; Flags: Precursor
 gi|18996122|gb|AAL79768.1| RecA protein [Arabidopsis thaliana]
 gi|22531124|gb|AAM97066.1| putative RecA protein [Arabidopsis thaliana]
 gi|23198012|gb|AAN15533.1| putative RecA protein [Arabidopsis thaliana]
          Length = 389

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 135/333 (40%), Positives = 215/333 (64%), Gaps = 5/333 (1%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           +  + +K  AL  ALSQ+   + K + + L  +      + V+S+GSL LD+ALG+GG P
Sbjct: 56  DRKVAEKDTALHLALSQLSGDFDKDSKLSL-QRFYRKRRVSVISTGSLNLDLALGVGGLP 114

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR+VE+YG E+SGKTTLALH I ++QK GG CA++DAE+A+D   A  +GV+ + LLIS
Sbjct: 115 KGRMVEVYGKEASGKTTLALHIIKEAQKLGGYCAYLDAENAMDPSLAESIGVNTEELLIS 174

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           +P + E+ L I D+L +SG+VD+IV+DSVAAL P+ E++  +GE     Q+R+M+QALRK
Sbjct: 175 RPSSAEKMLNIVDVLTKSGSVDVIVVDSVAALAPQCELDAPVGERYRDTQSRIMTQALRK 234

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSP---ETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           +  S+  S+ ++VF+NQ+R  +      P   E T GGNAL F++++RL + R G IK  
Sbjct: 235 IHYSVGYSQTLIVFLNQVRSHVKSNMHFPHAEEVTCGGNALPFHAAIRLKMIRTGLIKTA 294

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           + I+G    V+VVKNK+A   K+ E  I +G G     E+++L  +  ++ + G  +  +
Sbjct: 295 NKISGLNVCVQVVKNKLAPGKKKSELGIHFGHGFYVEREVLELACEHGVILREGTSYFIE 354

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
           G+ + +G++ ++ +L EN E  + + ++LR   
Sbjct: 355 GEVI-EGKDAAEKYLVENKEALDTVVAILRNQL 386


>gi|167462061|ref|ZP_02327150.1| recombinase A [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 230

 Score =  238 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 144/230 (62%), Positives = 182/230 (79%), Gaps = 4/230 (1%)

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI + LVRSGAVDII+IDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+
Sbjct: 1   DTGEQALEIAEALVRSGAVDIIIIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLS 60

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLDIRRV SIK  + I G
Sbjct: 61  GAINKSKVIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDIRRVESIKQGNDIIG 120

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           N+TR+KVVKNK+A PFKQ + DIMYGEGIS  G L+D+  +  I++KSGAW+S+   RLG
Sbjct: 121 NRTRIKVVKNKVAPPFKQADVDIMYGEGISKEGSLVDIASEMDIINKSGAWYSYNNDRLG 180

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           QGREN+K FL+EN +I++ IE  +R+ + L        PA+  +++ D +
Sbjct: 181 QGRENAKQFLKENPQISQEIEQKIREASNLTTTV----PAVTEEENEDLE 226


>gi|70904884|gb|AAZ14020.1| RecA [Burkholderia cenocepacia]
          Length = 226

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 166/224 (74%), Positives = 197/224 (87%), Gaps = 1/224 (0%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           A  QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESS
Sbjct: 4   APRQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESS 62

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD
Sbjct: 63  GKTTLTLQVIAELQKMGGTAAFIDAEHALDVQYASKLGVNVPDLLISQPDTGEQALEITD 122

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++
Sbjct: 123 ALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVI 182

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  
Sbjct: 183 FINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKN 226


>gi|146742340|gb|ABQ42691.1| RecA [Vibrio porteresiae]
          Length = 235

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 162/234 (69%), Positives = 199/234 (85%), Gaps = 2/234 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q
Sbjct: 1   MRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           + G TCAF+DAEHALD IYARKLGV++  LL+SQPDTGEQALEI D L RSGAVD++V+D
Sbjct: 59  REGKTCAFIDAEHALDPIYARKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMVVD 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++  S C+ +FINQ+RMKIGVMFG
Sbjct: 119 SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKASNCMCIFINQIRMKIGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           +PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ 
Sbjct: 179 NPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEA 232


>gi|269127501|ref|YP_003300871.1| recA protein [Thermomonospora curvata DSM 43183]
 gi|268312459|gb|ACY98833.1| recA protein [Thermomonospora curvata DSM 43183]
          Length = 729

 Score =  237 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 141/212 (66%), Positives = 170/212 (80%), Gaps = 2/212 (0%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KALEAAL+QI+R +GKG++M+LG +      +EV+ +GS+ LDIALGIGG P+
Sbjct: 1   MAANDRDKALEAALAQIERQFGKGSVMRLGDEARA--PVEVIPTGSISLDIALGIGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRI+EIYGPE SGKT++ALH IA  QK GG  AF+DAEHALD  YA KLGVD   LL+SQ
Sbjct: 59  GRIIEIYGPEGSGKTSIALHAIANVQKNGGIAAFIDAEHALDPEYAAKLGVDTDALLVSQ 118

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI DMLVRSGA+DIIV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 119 PDTGEQALEIADMLVRSGAIDIIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKM 178

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           T +IS++K   +FINQ+R KIGVMFG     T
Sbjct: 179 TGAISQAKTTAIFINQLREKIGVMFGCMSYGT 210



 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 88/264 (33%), Positives = 142/264 (53%), Gaps = 7/264 (2%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
            SG+  + +   +   +        D  H LD     +       L  +   + +    I
Sbjct: 438 GSGRVEICVEAFSPGSRERLVEYLRDT-HGLDVRLIERGARKAGVLQFTTAASAKFQELI 496

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG-MQARLMSQALRKLTSSISRSKC 195
              +  S    ++       L  R  +E    +  P  + A+++   ++  T S+ R   
Sbjct: 497 APYVHESMDYKLL-----PRLRGRCTVEPQFVDPEPRLVPAQILDVRVKPKTRSMRRFDI 551

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
            +   +   +   ++  SPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+ RVKVV
Sbjct: 552 EVEGAHNYFVDGVMVHNSPETTTGGRALKFYASVRLDVRRIETLKDGTEPVGNRVRVKVV 611

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK++ PFK  +FD++YG+GIS  G LIDLGV+  IV K+GAW++++G +LGQG+EN++ 
Sbjct: 612 KNKVSPPFKVADFDLLYGQGISREGGLIDLGVEHGIVRKAGAWYTYEGDQLGQGKENARN 671

Query: 316 FLRENIEIAENIESLLRQNAGLVA 339
           FLR N +IA+ IE  +++  G+  
Sbjct: 672 FLRSNPDIADEIEKKIKEKLGIGP 695


>gi|6694816|gb|AAF25401.1|AF214754_1 RecA protein [Arthrobacter sp. 'SMCC ZAT262']
          Length = 234

 Score =  237 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 157/232 (67%), Positives = 193/232 (83%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  
Sbjct: 2   GSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHALDPE 61

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA KLGVD   LL+SQPDTGEQALEI DML+ SG++D+IVIDSVAAL PRAEIEGDMG+S
Sbjct: 62  YAAKLGVDTDALLVSQPDTGEQALEIMDMLIGSGSLDVIVIDSVAALVPRAEIEGDMGDS 121

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
             G+QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R
Sbjct: 122 HVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIR 181

Query: 231 LDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           +D+RR+ ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS  G +
Sbjct: 182 IDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQGISREGGI 233


>gi|158263015|gb|ABW24284.1| RecA [Streptococcus equinus]
          Length = 251

 Score =  237 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 161/251 (64%), Positives = 202/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+S+GSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSTGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G++  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDNHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FYSSVRLD+R    IK     KDS  G +T++KVVKNK+A PFK  E +IMYGEGIS  G
Sbjct: 181 FYSSVRLDVRGNTQIKGTGDQKDSNIGKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTG 240

Query: 281 ELIDLGVKASI 291
           ELI +     I
Sbjct: 241 ELIKIASDLDI 251


>gi|158263017|gb|ABW24285.1| RecA [Streptococcus canis]
 gi|158263025|gb|ABW24289.1| RecA [Streptococcus dysgalactiae subsp. dysgalactiae]
 gi|158263027|gb|ABW24290.1| RecA [Streptococcus dysgalactiae subsp. equisimilis]
 gi|158263147|gb|ABW24350.1| RecA [Streptococcus pyogenes]
          Length = 251

 Score =  237 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 161/251 (64%), Positives = 202/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KDS  G +T++KVVKNK+A PFK  E +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGTTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTG 240

Query: 281 ELIDLGVKASI 291
           EL+ +     I
Sbjct: 241 ELVKIASDLDI 251


>gi|158263157|gb|ABW24355.1| RecA [Streptococcus sobrinus]
          Length = 251

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 161/251 (64%), Positives = 203/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG+GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGVGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGVAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FYSSVRLD+R    IK     KDS  G +T++KVVKNK+A PFK  + +IMYGEGIS  G
Sbjct: 181 FYSSVRLDVRGNTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAQVEIMYGEGISRTG 240

Query: 281 ELIDLGVKASI 291
           EL+ +     I
Sbjct: 241 ELVKIATDLDI 251


>gi|158263023|gb|ABW24288.1| RecA [Streptococcus downei MFe28]
          Length = 251

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 161/251 (64%), Positives = 203/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG+GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGVGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPSYAVALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FYSSVRLD+R    IK     KDS  G +T++KVVKNK+A PFK  + +IMYGEGIS  G
Sbjct: 181 FYSSVRLDVRGNTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAQVEIMYGEGISRTG 240

Query: 281 ELIDLGVKASI 291
           EL+ +     I
Sbjct: 241 ELVKIATDLDI 251


>gi|290795141|gb|ADD64585.1| RecA recombinase [Vibrio kanaloae]
          Length = 230

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 163/232 (70%), Positives = 198/232 (85%), Gaps = 2/232 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +
Sbjct: 1   IMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VI
Sbjct: 59  QKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVI 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMF
Sbjct: 119 DSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           G+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+ VVKNK+A+PF
Sbjct: 179 GNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRITVVKNKIAAPF 230


>gi|23194267|gb|AAN15081.1| RecA protein [Vibrio cholerae]
          Length = 236

 Score =  236 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 166/236 (70%), Positives = 203/236 (86%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           L LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA
Sbjct: 1   LSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           +KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  
Sbjct: 61  KKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHM 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD
Sbjct: 121 GLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 180

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           IRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK
Sbjct: 181 IRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVK 236


>gi|145327737|ref|NP_001077844.1| DNA repair protein recA [Arabidopsis thaliana]
 gi|332198077|gb|AEE36198.1| DNA repair protein recA-like 1 [Arabidopsis thaliana]
          Length = 343

 Score =  236 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 151/260 (58%), Positives = 196/260 (75%), Gaps = 5/260 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +D+ KALEAA++ I   +GKG++ +LGS G     +E  SSG L LD+ALG GG PKGR+
Sbjct: 81  LDRQKALEAAMNDINSSFGKGSVTRLGSAGGAL--VETFSSGILTLDLALG-GGLPKGRV 137

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALH IA+ QK GG    VDAEHA D  Y++ LGVD++NL++ QPD 
Sbjct: 138 VEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDN 197

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GE ALE  D + RSGAVD+I +DSV+ALTPRAEIEG++G    G+QARLMSQALRK++ +
Sbjct: 198 GEMALETADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGN 257

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK--DKDSITG 247
            S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++SVRL+IR  G IK    D   G
Sbjct: 258 ASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSAGKIKSSKGDEDIG 317

Query: 248 NQTRVKVVKNKMASPFKQVE 267
            + RV+V K+K++ P+KQ E
Sbjct: 318 LRARVRVQKSKVSRPYKQEE 337


>gi|290795139|gb|ADD64584.1| RecA recombinase [Vibrio sp. FALF273]
          Length = 236

 Score =  236 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 162/236 (68%), Positives = 203/236 (86%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  
Sbjct: 1   GGLPMGRIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDA 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 61  LLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 121 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 180

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
            D + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GEL+DLGVK  +V+K+GA
Sbjct: 181 GDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKAGA 236


>gi|327415903|gb|AEA75517.1| recombinase A [Aliivibrio fischeri]
 gi|327415905|gb|AEA75518.1| recombinase A [Aliivibrio fischeri]
 gi|327415907|gb|AEA75519.1| recombinase A [Aliivibrio fischeri]
 gi|327415909|gb|AEA75520.1| recombinase A [Aliivibrio fischeri]
 gi|327415911|gb|AEA75521.1| recombinase A [Aliivibrio fischeri]
 gi|327415913|gb|AEA75522.1| recombinase A [Aliivibrio fischeri]
 gi|327415915|gb|AEA75523.1| recombinase A [Aliivibrio fischeri]
 gi|327415917|gb|AEA75524.1| recombinase A [Aliivibrio fischeri]
 gi|327415919|gb|AEA75525.1| recombinase A [Aliivibrio fischeri]
 gi|327415921|gb|AEA75526.1| recombinase A [Aliivibrio fischeri]
 gi|327415923|gb|AEA75527.1| recombinase A [Aliivibrio fischeri]
 gi|327415927|gb|AEA75529.1| recombinase A [Aliivibrio fischeri]
 gi|327415929|gb|AEA75530.1| recombinase A [Aliivibrio fischeri]
 gi|327415931|gb|AEA75531.1| recombinase A [Aliivibrio fischeri]
 gi|327415933|gb|AEA75532.1| recombinase A [Aliivibrio fischeri]
          Length = 230

 Score =  236 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 160/231 (69%), Positives = 198/231 (85%), Gaps = 2/231 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  I
Sbjct: 1   KGSIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG
Sbjct: 119 MVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           VMFG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+KVVKNK+
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGNETRIKVVKNKI 229


>gi|148879013|emb|CAM07022.1| RecA protein [Mycobacterium llatzerense]
          Length = 225

 Score =  236 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 147/224 (65%), Positives = 183/224 (81%)

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG  A  DAE ALD  YA+KLGVD   LL+SQPDTGEQALEI DMLVRSGA+DI+VIDS
Sbjct: 1   AGGXAAXXDAEXALDPDYAQKLGVDTDALLVSQPDTGEQALEIADMLVRSGAIDILVIDS 60

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           VAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R KIGVMFGS
Sbjct: 61  VAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGS 120

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PETTTGG ALKFY+SVR+D+RR+ ++KD     GN+TR K+VKNK+A PFKQ EFDI+YG
Sbjct: 121 PETTTGGKALKFYASVRIDVRRIETLKDGTDAVGNRTRAKIVKNKVAPPFKQAEFDILYG 180

Query: 274 EGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317
           +GIS  G LID+GV+   + KSG+WF++ G++LGQG+EN++ +L
Sbjct: 181 KGISKEGSLIDMGVEHGFIRKSGSWFTYHGEQLGQGKENARNYL 224


>gi|158263049|gb|ABW24301.1| RecA [Streptococcus iniae]
          Length = 251

 Score =  236 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 162/251 (64%), Positives = 202/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAASLGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FYSSVRLD+R    IK     KDS  G +T++KVVKNK+A PFK  E +IMYGEGIS  G
Sbjct: 181 FYSSVRLDVRGNTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTG 240

Query: 281 ELIDLGVKASI 291
           EL+ +     I
Sbjct: 241 ELVKIASDLDI 251


>gi|189409699|gb|ACD93566.1| homologous recombination factor [Streptococcus suis]
          Length = 243

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 139/242 (57%), Positives = 186/242 (76%), Gaps = 4/242 (1%)

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG  AF+DAEHALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSV
Sbjct: 1   GGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV 60

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +SI+++K + +FINQ+R K+GVMFG+P
Sbjct: 61  AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFGNP 120

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           ETT GG ALKFY+SVR+D+R    IK     KD   G +T+VK+VKNK+A PFK+   +I
Sbjct: 121 ETTPGGRALKFYASVRMDVRGNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEAVVEI 180

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
           MYGEGIS  GELI++G    I+ K+GAW+S+ G+++GQG EN+K FL +N  I + I+  
Sbjct: 181 MYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKIGQGSENAKKFLADNPAIFDEIDRK 240

Query: 331 LR 332
           +R
Sbjct: 241 IR 242


>gi|52630785|gb|AAU84860.1| RecA [Burkholderia sacchari]
          Length = 231

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 173/231 (74%), Positives = 206/231 (89%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AE
Sbjct: 61  AEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           IEG+MG+SLPG+QARLMSQALRKLT +I ++ C+++FINQ+RMKIGVMFG+PETTTGGNA
Sbjct: 121 IEGEMGDSLPGLQARLMSQALRKLTGTIKKTNCMVIFINQIRMKIGVMFGNPETTTGGNA 180

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           LKFYSSVRLDIRR+GSIK  D + G++TRVKVVKNK++ PF++  FDI+YG
Sbjct: 181 LKFYSSVRLDIRRIGSIKKNDEVIGSETRVKVVKNKVSPPFREPVFDILYG 231


>gi|158263029|gb|ABW24291.1| RecA [Streptococcus equi subsp. equi]
 gi|158263031|gb|ABW24292.1| RecA [Streptococcus equi subsp. zooepidemicus]
          Length = 251

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 161/251 (64%), Positives = 202/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G++  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDNHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KDS  G +T++KVVKNK+A PFK  E +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGTTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTG 240

Query: 281 ELIDLGVKASI 291
           ELI +     I
Sbjct: 241 ELIKIASDLDI 251


>gi|158263035|gb|ABW24294.1| RecA [Streptococcus gallolyticus subsp. gallolyticus]
 gi|158263039|gb|ABW24296.1| RecA [Streptococcus pasteurianus]
          Length = 251

 Score =  235 bits (599), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 160/251 (63%), Positives = 202/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G++  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDNHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KDS  G +T++KVVKNK+A PFK  E +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGSGDQKDSNIGKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTG 240

Query: 281 ELIDLGVKASI 291
           EL+ +     I
Sbjct: 241 ELVKIASDLDI 251


>gi|158263043|gb|ABW24298.1| RecA [Streptococcus infantarius subsp. infantarius ATCC BAA-102]
 gi|158263045|gb|ABW24299.1| RecA [Streptococcus lutetiensis]
          Length = 251

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 162/251 (64%), Positives = 202/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G++  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDNHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FYSSVRLD+R    IK     KDS  G +T++KVVKNK+A PFK  E +IMYGEGIS  G
Sbjct: 181 FYSSVRLDVRGNTQIKGTGDQKDSNIGKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTG 240

Query: 281 ELIDLGVKASI 291
           ELI +     I
Sbjct: 241 ELIKIASDLDI 251


>gi|158263101|gb|ABW24327.1| RecA [Streptococcus parauberis]
          Length = 251

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 162/251 (64%), Positives = 202/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+
Sbjct: 61  HALDPAYAASLGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KDS  G +T++KVVKNK+A PFK  E +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDQKDSSIGKETKIKVVKNKIAPPFKVAEVEIMYGEGISRTG 240

Query: 281 ELIDLGVKASI 291
           EL+ +     I
Sbjct: 241 ELVKIASDLDI 251


>gi|295848049|gb|ADG44936.1| recombinase A [Vibrio cholerae]
 gi|295848053|gb|ADG44938.1| recombinase A [Vibrio cholerae]
 gi|295848057|gb|ADG44940.1| recombinase A [Vibrio cholerae]
          Length = 235

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 163/235 (69%), Positives = 202/235 (85%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL
Sbjct: 1   LPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELL 60

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+
Sbjct: 61  VSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAM 120

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ +
Sbjct: 121 RKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGE 180

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
            + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGAW
Sbjct: 181 EVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAW 235


>gi|158263163|gb|ABW24358.1| RecA [Streptococcus uberis]
          Length = 251

 Score =  235 bits (598), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 162/251 (64%), Positives = 202/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KDS  G +T++KVVKNK+A PFK  E +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTG 240

Query: 281 ELIDLGVKASI 291
           ELI +     +
Sbjct: 241 ELIKIASDLDV 251


>gi|158263149|gb|ABW24351.1| RecA [Streptococcus ratti]
          Length = 251

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 161/251 (64%), Positives = 202/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRIVEIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIVEIYGPESSGKTTVALHAVAQAQKDGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGQLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KDS  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDQKDSNIGKETKIKVVKNKVAPPFKEAFVEIMYGEGISRTG 240

Query: 281 ELIDLGVKASI 291
           EL+ +     I
Sbjct: 241 ELVKIASDLGI 251


>gi|295825212|gb|ADG23043.1| recombinase A [Erwinia sp. CFBP 5882]
          Length = 232

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 161/234 (68%), Positives = 198/234 (84%), Gaps = 2/234 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q
Sbjct: 1   MRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIASAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           + G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++D
Sbjct: 59  RKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVD 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKIGVMFG
Sbjct: 119 SVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNSGTLLIFINQIRMKIGVMFG 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           +PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A+PFKQ 
Sbjct: 179 NPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSETRVKVVKNKVAAPFKQA 232


>gi|179185317|gb|ACB78178.1| RecA [Vibrio inusitatus]
          Length = 237

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 161/233 (69%), Positives = 198/233 (84%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+GSL LDIALG GG P GRIV +YGP+SSGKTTL L  IA +Q+ G TCAF+DA
Sbjct: 5   DVETISTGSLSLDIALGAGGLPMGRIVXVYGPKSSGKTTLTLELIAAAQREGKTCAFIDA 64

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEI
Sbjct: 65  EHALDPIYAQKLGVNIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEI 124

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+ MKIGVMFG+PETTTGGNAL
Sbjct: 125 EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQICMKIGVMFGNPETTTGGNAL 184

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276
           KFY+SV LDIRR G+IKD D I GN+TR+KVVKNK+A+PFKQ E  IMYG+G 
Sbjct: 185 KFYASVXLDIRRTGAIKDGDXIVGNETRIKVVKNKIAAPFKQAETQIMYGQGF 237


>gi|309808699|ref|ZP_07702589.1| RecA protein [Lactobacillus iners LactinV 01V1-a]
 gi|308168060|gb|EFO70188.1| RecA protein [Lactobacillus iners LactinV 01V1-a]
          Length = 247

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 132/247 (53%), Positives = 184/247 (74%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           +D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+
Sbjct: 1   MDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDILVVDSVAALVPRAEIEGE 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG++  G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG ALKFY
Sbjct: 61  MGDAHVGLQARLMSQALRKLSGNISKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFY 120

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
           S++RL++R+   IK      G++ ++KVVKNK+A PFK    DIMYG GIS  GEL+D+ 
Sbjct: 121 STIRLEVRKSEQIKQGSDPIGSRVKIKVVKNKVAPPFKVATVDIMYGIGISKSGELLDMA 180

Query: 287 VKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           V   IV+KSGAW+S+   R+GQGREN+K +L E+ +I   I   +RQ  G+      ++ 
Sbjct: 181 VDKDIVNKSGAWYSYGDDRIGQGRENAKQYLEEHPDIFREINDKVRQAYGIDNKESDEDS 240

Query: 347 AINTKDD 353
           + +T+ +
Sbjct: 241 SEDTEQE 247


>gi|298714206|emb|CBJ27342.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 329

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 142/249 (57%), Positives = 193/249 (77%), Gaps = 2/249 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           +  K  AL  AL Q++  YGKGA+MQLGS  +    +EV+ +GSL LD ALG+GG P+GR
Sbjct: 54  VPKKQLALSMALKQVEMAYGKGAVMQLGS--AEVAKVEVIPTGSLSLDHALGVGGLPRGR 111

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VE+YGPESSGKTT+ALH +A+ QK GGT  F+DAEHALDS YA+ +GVD+  L ++QPD
Sbjct: 112 VVEVYGPESSGKTTVALHAVAKCQKAGGTAVFIDAEHALDSAYAKAIGVDMTKLYLAQPD 171

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
            GEQAL+I D LV+S AVD++V+DSVAAL P+AE+EG+MG+    +QARLMSQALRKLT+
Sbjct: 172 NGEQALDIVDTLVKSAAVDMVVVDSVAALVPKAELEGEMGDHHIALQARLMSQALRKLTA 231

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            ++ ++C L+FINQ+R K+GV+FGSP+ T+GG AL+FYSSVRL++R+  +IK    + G 
Sbjct: 232 ILNTTRCTLIFINQIRQKVGVVFGSPDVTSGGMALRFYSSVRLEVRKGQAIKQNGEMVGT 291

Query: 249 QTRVKVVKN 257
           +  V+V+  
Sbjct: 292 KRGVRVLVG 300


>gi|149183380|ref|ZP_01861816.1| RecA [Bacillus sp. SG-1]
 gi|148848923|gb|EDL63137.1| RecA [Bacillus sp. SG-1]
          Length = 249

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 152/244 (62%), Positives = 193/244 (79%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YA+KLGV++  LL+SQPDTGEQALEI + LVRSGAVDI+VIDSVAAL P+AEIEG+
Sbjct: 1   LDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGE 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+S  G+QARLMSQALRKL+ +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFY
Sbjct: 61  MGDSHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFY 120

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
           SSVRL++RR  ++K  + + GN+T+VKVVKNK+A PF+  E DIMYG+GIS  GE+ID+G
Sbjct: 121 SSVRLEVRRAETLKQGNEMVGNKTKVKVVKNKVAPPFRVAEVDIMYGQGISREGEIIDMG 180

Query: 287 VKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346
            +  IV KSGAW+S+  +RLGQGREN+KIFL+EN EI   I   +R + GL       E 
Sbjct: 181 SELDIVQKSGAWYSYNEERLGQGRENAKIFLKENPEIRNEIMLKIRDHYGLDTGKAETEE 240

Query: 347 AINT 350
           A + 
Sbjct: 241 AQDE 244


>gi|218189546|gb|EEC71973.1| hypothetical protein OsI_04810 [Oryza sativa Indica Group]
          Length = 339

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 162/345 (46%), Positives = 230/345 (66%), Gaps = 21/345 (6%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M LG +      + VVS+GS  LD          GR++E+YGPE+SGKTTLALH IA++Q
Sbjct: 1   MWLG-RSEGRREVPVVSTGSFSLDWHW-----ELGRVIEVYGPEASGKTTLALHVIAEAQ 54

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD   A  +GV+  NLL+SQPD GEQAL + D L+RSG+VD++V+D
Sbjct: 55  KHGGYCAFVDAEHALDPALAESIGVNTSNLLLSQPDCGEQALSLVDTLIRSGSVDVVVVD 114

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV--- 209
           SVAAL P++E+ G+MG++   +QARLMSQALRKL+ S+S S+ IL+FINQ+R K+     
Sbjct: 115 SVAALVPKSELAGEMGDAHVALQARLMSQALRKLSHSLSLSQTILLFINQIRSKVTTFGG 174

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
             G  E T+GGNALKFY+SVR++I+R+G +K  +   G+Q  VK+VKNK A PFK  +F+
Sbjct: 175 FGGPMEVTSGGNALKFYASVRMNIKRIGLVKKGEETIGSQVLVKIVKNKHAPPFKTAQFE 234

Query: 270 IMYGEGISFFGELIDLGVKASIVDK-SGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
           + +G+GI    ELI+LG+K  +V K  GA++SF  +   +G++  K +L EN  IA+ +E
Sbjct: 235 LEFGKGICRSSELIELGLKHKLVKKLGGAFYSFNEES-YRGKDALKSYLNENESIAKELE 293

Query: 329 SLLRQNAGLVAD----------SLLQEPAINTKDDADKDDTDNVE 363
           + LR+     A           S L E ++ T+  ++++    +E
Sbjct: 294 TNLRKLMETQAPKKQEDEGDFLSDLPEESLATETSSEEELAAVIE 338


>gi|158263037|gb|ABW24295.1| RecA [Streptococcus macedonicus]
          Length = 251

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 159/251 (63%), Positives = 202/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PR+EI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRSEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G++  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDNHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KDS  G +T++KVVKNK+A PFK  E +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGSGDQKDSNIGKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTG 240

Query: 281 ELIDLGVKASI 291
           EL+ +     I
Sbjct: 241 ELVKIASDLDI 251


>gi|158263105|gb|ABW24329.1| RecA [Streptococcus pluranimalium]
          Length = 251

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 160/251 (63%), Positives = 203/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+ LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPMYAQALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FYSSVRLD+R    IK     KD   G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYSSVRLDVRGNTQIKGTGDKKDQNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISRTG 240

Query: 281 ELIDLGVKASI 291
           EL+ +     I
Sbjct: 241 ELVKIASDLDI 251


>gi|290795147|gb|ADD64588.1| RecA recombinase [Vibrio splendidus]
          Length = 224

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 157/226 (69%), Positives = 193/226 (85%), Gaps = 2/226 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  I+
Sbjct: 1   GSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIS 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++
Sbjct: 59  AAQKVGKTCAFIDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVL 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGV
Sbjct: 119 VIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           MFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVV
Sbjct: 179 MFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVV 224


>gi|158263009|gb|ABW24281.1| RecA [Streptococcus agalactiae ATCC 13813]
          Length = 251

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 161/251 (64%), Positives = 201/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRIVEIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIVEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FYSSVRLD+R    IK     KD   G +T++KVVKNK+A PF++   +IMYGEGIS  G
Sbjct: 181 FYSSVRLDVRGNTQIKGTGEHKDHNVGKETKIKVVKNKVAPPFREAFVEIMYGEGISRTG 240

Query: 281 ELIDLGVKASI 291
           ELI +     I
Sbjct: 241 ELIKIASDLDI 251


>gi|158263153|gb|ABW24353.1| RecA [Streptococcus sanguinis]
          Length = 251

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 161/251 (64%), Positives = 203/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK    DKD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDDKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTG 240

Query: 281 ELIDLGVKASI 291
           ELI +     I
Sbjct: 241 ELIKIATDLDI 251


>gi|327415925|gb|AEA75528.1| recombinase A [Aliivibrio fischeri]
          Length = 230

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 159/231 (68%), Positives = 198/231 (85%), Gaps = 2/231 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  I
Sbjct: 1   KGSIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +VIDSVAALTP+A+IEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG
Sbjct: 119 MVIDSVAALTPKAQIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           VMFG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+KVVKNK+
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGNETRIKVVKNKI 229


>gi|290795149|gb|ADD64589.1| RecA recombinase [Vibrio sp. FAL1267]
          Length = 220

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 156/222 (70%), Positives = 189/222 (85%), Gaps = 2/222 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D
Sbjct: 59  IAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAID 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           GVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNE 220


>gi|158263165|gb|ABW24359.1| RecA [Streptococcus urinalis 2285-97]
          Length = 251

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 157/251 (62%), Positives = 202/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKDGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++ +LL+SQPD+GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDDLLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K + +FINQ+R K+G+MFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTVAIFINQLREKVGIMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     +D   G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDQRDQNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISRTG 240

Query: 281 ELIDLGVKASI 291
           EL+ +     I
Sbjct: 241 ELVKIATDLDI 251


>gi|290795143|gb|ADD64586.1| RecA recombinase [Vibrio sp. FALF75]
          Length = 229

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 166/229 (72%), Positives = 199/229 (86%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +QK G TCAFVDAEH
Sbjct: 1   ETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIEG
Sbjct: 61  ALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKF
Sbjct: 121 EMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKF 180

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           Y+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E  I+YG+
Sbjct: 181 YASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGK 229


>gi|281414271|ref|ZP_06246013.1| protein RecA [Micrococcus luteus NCTC 2665]
          Length = 239

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 138/226 (61%), Positives = 178/226 (78%)

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           ++SQPDTGEQALEI DMLV SG +DI+VIDSVAALTPRAEIEG+MG+S  G+QARLMSQA
Sbjct: 1   MVSQPDTGEQALEIMDMLVSSGTLDIVVIDSVAALTPRAEIEGEMGDSHVGLQARLMSQA 60

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           LRK+T  + ++K   +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+ 
Sbjct: 61  LRKVTGRLHQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKEA 120

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
            +  GN+TRVK+VKNKMA PFKQ EFDI+YG GIS  G LID+GV+  IV KSGAWF++ 
Sbjct: 121 GNPVGNRTRVKIVKNKMAPPFKQAEFDILYGVGISREGGLIDMGVEEGIVKKSGAWFTYD 180

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348
           G +LGQG+EN++ FL++N ++A  IE  +    G+   S  ++   
Sbjct: 181 GDQLGQGKENARRFLKDNPDLANEIEQRILTKLGIGVASEAEDDEA 226


>gi|315021913|gb|ADT70824.1| recombinase A [Pectobacterium carotovorum]
          Length = 229

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 159/231 (68%), Positives = 196/231 (84%), Gaps = 2/231 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIG
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKV 229


>gi|38455825|gb|AAR20910.1| RecA [Bifidobacterium animalis]
 gi|38455827|gb|AAR20911.1| RecA [Bifidobacterium animalis subsp. lactis]
 gi|38455829|gb|AAR20912.1| RecA [Bifidobacterium animalis subsp. lactis]
 gi|38455831|gb|AAR20913.1| RecA [Bifidobacterium animalis subsp. lactis]
 gi|38455833|gb|AAR20914.1| RecA [Bifidobacterium animalis subsp. lactis]
 gi|38455835|gb|AAR20915.1| RecA [Bifidobacterium animalis subsp. lactis]
 gi|38455837|gb|AAR20916.1| RecA [Bifidobacterium animalis subsp. animalis ATCC 25527]
 gi|38569713|gb|AAR24377.1| RecA [Bifidobacterium animalis]
 gi|38569715|gb|AAR24378.1| RecA [Bifidobacterium animalis]
 gi|38569717|gb|AAR24379.1| RecA [Bifidobacterium animalis]
 gi|38569719|gb|AAR24380.1| RecA [Bifidobacterium animalis subsp. lactis DSM 10140]
          Length = 229

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 161/229 (70%), Positives = 195/229 (85%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALGIGG P+GRIVEIYGPESSGKTTLALH +A +QK GG  AF+DAEHALD +YAR LGV
Sbjct: 1   ALGIGGLPRGRIVEIYGPESSGKTTLALHVVANAQKNGGVAAFIDAEHALDPVYARHLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           D  +L++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEGDMG+S  G+QAR
Sbjct: 61  DTDSLIVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGDMGDSHVGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           LMSQALRK+T +++++    +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+DIRR+ 
Sbjct: 121 LMSQALRKMTGALAQANTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRMDIRRIQ 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
           ++KDKD   GN+TRVKVVKNKMA PFK  EFD++YG+GIS  G ++D+ 
Sbjct: 181 TLKDKDEPIGNRTRVKVVKNKMAPPFKTAEFDMLYGQGISQEGSILDMA 229


>gi|162286687|gb|ABX83454.1| RecA [Acidovorax anthurii]
          Length = 240

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 179/239 (74%), Positives = 212/239 (88%), Gaps = 1/239 (0%)

Query: 47  VVSSG-SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           VVS+G SLGLD+ALG+GG P+GR++EIYGPESSGKTTL L  IA+ QK  GTCAFVDAEH
Sbjct: 2   VVSTGASLGLDVALGVGGLPRGRVIEIYGPESSGKTTLTLQVIAEMQKQAGTCAFVDAEH 61

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA+KLGV + +LLISQPDTGEQALEI D LVRSGAVD+IVIDSVAALTP+AEIEG
Sbjct: 62  ALDIQYAQKLGVHVPDLLISQPDTGEQALEIVDSLVRSGAVDLIVIDSVAALTPKAEIEG 121

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +MG++LPG+QARLMSQALRKLT++I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKF
Sbjct: 122 EMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKF 181

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           Y+SVRLDIRR G+IK  D   GN+T+VKVVKNK++ PFK  EFDI++GEGIS  GE+ID
Sbjct: 182 YASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIID 240


>gi|308171324|gb|ADO15981.1| RecA [Vibrio scophthalmi LMG 19158]
          Length = 234

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 161/233 (69%), Positives = 201/233 (86%)

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQ
Sbjct: 2   GRIVEVYGPESSGKTTLTLELIAAAQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQ 61

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKL
Sbjct: 62  PDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKL 121

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIKD D + 
Sbjct: 122 TGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEVV 181

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  GEL+DLGVK  +++K+  W+
Sbjct: 182 GNETRIKVVKNKIAAPFKQAETQILYGQGFNREGELVDLGVKHKLIEKAVPWY 234


>gi|158263021|gb|ABW24287.1| RecA [Streptococcus criceti]
          Length = 251

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 160/251 (63%), Positives = 203/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG+GG+PKGRI+EIYGPESSGKTT+ALH ++Q+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGVGGYPKGRIIEIYGPESSGKTTVALHAVSQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FYSSVRLD+R    IK     KDS  G +T++KVVKNK+A PFK  + +IMYGEGIS  G
Sbjct: 181 FYSSVRLDVRGNTQIKGTGEQKDSSIGKETKIKVVKNKVAPPFKVAQVEIMYGEGISQTG 240

Query: 281 ELIDLGVKASI 291
           EL+ +     I
Sbjct: 241 ELVKIATDLDI 251


>gi|158263093|gb|ABW24323.1| RecA [Streptococcus oralis]
 gi|158263095|gb|ABW24324.1| RecA [Streptococcus oralis]
          Length = 251

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 160/251 (63%), Positives = 201/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGSTQIKGTGDQKDTSVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISRTG 240

Query: 281 ELIDLGVKASI 291
           EL+ +     I
Sbjct: 241 ELLKIASDLDI 251


>gi|156902078|gb|ABU96832.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 164/234 (70%), Positives = 201/234 (85%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           L LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA
Sbjct: 1   LSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           +KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  
Sbjct: 61  KKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHM 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD
Sbjct: 121 GLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 180

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
           IRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLG
Sbjct: 181 IRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLG 234


>gi|145577839|gb|ABP87370.1| RecA [Vibrio rhizosphaerae]
          Length = 223

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 155/225 (68%), Positives = 193/225 (85%), Gaps = 2/225 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD +YA+KLGVD+ +LL+SQPDTGEQALEI D L RSGA+D++V
Sbjct: 59  AQREGKTCAFIDAEHALDPVYAKKLGVDIDSLLVSQPDTGEQALEICDALARSGAIDVMV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM
Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVV
Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVV 223


>gi|158263053|gb|ABW24303.1| RecA [Streptococcus macacae NCTC 11558]
          Length = 251

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 157/251 (62%), Positives = 199/251 (79%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKDGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+G+MFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIKDKDS----ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FYSSVRLD+R    IK          G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYSSVRLDVRGNTQIKGSGDTKDANIGKETKIKVVKNKVAPPFKEAFVEIMYGEGISRTG 240

Query: 281 ELIDLGVKASI 291
           EL+ +     I
Sbjct: 241 ELVKIASDLGI 251


>gi|6694813|gb|AAF25398.1|AF214751_1 RecA protein [Arthrobacter sp. 'SMCC ZAT263']
          Length = 232

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 157/232 (67%), Positives = 192/232 (82%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD
Sbjct: 1   LGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDAEHALDPEYAAKLGVD 60

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
              LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIEGDMG+S  G+QARL
Sbjct: 61  TDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQARL 120

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ +
Sbjct: 121 MSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQT 180

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS 290
           +K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS  G +ID+GV+  
Sbjct: 181 LKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQGISREGGIIDMGVEHG 232


>gi|158263071|gb|ABW24312.1| RecA [Streptococcus mutans]
          Length = 251

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 160/251 (63%), Positives = 202/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRIVEIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIVEIYGPESSGKTTVALHAVAQAQKDGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+G+MFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FYSSVRLD+R    IK     KDS  G +T++KVVKNK+A PFK+   +I+YGEGIS  G
Sbjct: 181 FYSSVRLDVRGNTQIKGTGEQKDSNIGKETKIKVVKNKVAPPFKEAFVEIIYGEGISRTG 240

Query: 281 ELIDLGVKASI 291
           EL+ +     I
Sbjct: 241 ELVKIASDLGI 251


>gi|157493229|gb|ABV57980.1| RecA [Vibrio mimicus]
          Length = 229

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 160/229 (69%), Positives = 198/229 (86%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHA
Sbjct: 1   TISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+
Sbjct: 61  LDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY
Sbjct: 121 MGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFY 180

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275
           +SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G
Sbjct: 181 ASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQG 229


>gi|158262814|gb|ABW24184.1| RecA [Streptococcus mitis]
 gi|158263057|gb|ABW24305.1| RecA [Streptococcus mitis]
 gi|158263059|gb|ABW24306.1| RecA [Streptococcus mitis]
 gi|158263061|gb|ABW24307.1| RecA [Streptococcus mitis]
 gi|158263065|gb|ABW24309.1| RecA [Streptococcus mitis]
 gi|158263067|gb|ABW24310.1| RecA [Streptococcus mitis]
 gi|158263069|gb|ABW24311.1| RecA [Streptococcus mitis]
 gi|315189752|gb|ADT89720.1| RecA protein [Streptococcus mitis]
 gi|315189756|gb|ADT89722.1| RecA protein [Streptococcus mitis]
 gi|315189758|gb|ADT89723.1| RecA protein [Streptococcus mitis]
 gi|315189760|gb|ADT89724.1| RecA protein [Streptococcus mitis]
 gi|315189762|gb|ADT89725.1| RecA protein [Streptococcus mitis]
 gi|315189764|gb|ADT89726.1| RecA protein [Streptococcus mitis]
 gi|315189766|gb|ADT89727.1| RecA protein [Streptococcus mitis]
 gi|315189768|gb|ADT89728.1| RecA protein [Streptococcus mitis]
 gi|315189770|gb|ADT89729.1| RecA protein [Streptococcus mitis]
 gi|315189774|gb|ADT89731.1| RecA protein [Streptococcus mitis]
 gi|315189776|gb|ADT89732.1| RecA protein [Streptococcus mitis]
 gi|315189778|gb|ADT89733.1| RecA protein [Streptococcus mitis]
 gi|315189780|gb|ADT89734.1| RecA protein [Streptococcus mitis]
 gi|315189782|gb|ADT89735.1| RecA protein [Streptococcus mitis]
 gi|315189784|gb|ADT89736.1| RecA protein [Streptococcus mitis]
 gi|315189786|gb|ADT89737.1| RecA protein [Streptococcus mitis]
          Length = 251

 Score =  233 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 159/251 (63%), Positives = 201/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGSTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTG 240

Query: 281 ELIDLGVKASI 291
           EL+ +     I
Sbjct: 241 ELLKIASDLDI 251


>gi|109944610|emb|CAI84894.1| recombinase A [Lactobacillus plantarum]
          Length = 223

 Score =  233 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 142/225 (63%), Positives = 185/225 (82%), Gaps = 2/225 (0%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           + +GKGAIM++G        I  +SSGSL LD ALG+GG+P+GRIVEIYGPESSGKTT+A
Sbjct: 1   KNFGKGAIMRMGDAAQTT--ISTISSGSLALDDALGVGGYPRGRIVEIYGPESSGKTTVA 58

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH +A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGEQ LEI D LV SG
Sbjct: 59  LHAVAEVQKQGGTAAYIDAENALDPVYAEHLGVNIDDLLLSQPDTGEQGLEIADALVSSG 118

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           AVDI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +++++K I +FINQ+R
Sbjct: 119 AVDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTLNKTKTIALFINQIR 178

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            K+GVMFG+PETT GG ALKFY+++RL++RR   IK+  +I GN+
Sbjct: 179 EKVGVMFGNPETTPGGRALKFYATIRLEVRRAEQIKEGTNIIGNR 223


>gi|158263099|gb|ABW24326.1| RecA [Streptococcus parasanguinis ATCC 15912]
          Length = 251

 Score =  233 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 159/251 (63%), Positives = 201/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAMVEIMYGEGISRTG 240

Query: 281 ELIDLGVKASI 291
           EL+ +     I
Sbjct: 241 ELVKIATDLDI 251


>gi|158263047|gb|ABW24300.1| RecA [Streptococcus infantis ATCC 700779]
          Length = 251

 Score =  233 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 160/251 (63%), Positives = 201/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGSTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEALVEIMYGEGISRTG 240

Query: 281 ELIDLGVKASI 291
           EL+ +     I
Sbjct: 241 ELLKIASDLDI 251


>gi|158263011|gb|ABW24282.1| RecA [Streptococcus anginosus SK52]
 gi|158263019|gb|ABW24286.1| RecA [Streptococcus constellatus subsp. constellatus]
 gi|158263051|gb|ABW24302.1| RecA [Streptococcus intermedius]
          Length = 251

 Score =  233 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 160/251 (63%), Positives = 204/251 (81%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA+ LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+
Sbjct: 61  HALDPAYAQALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+G+MFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK    +KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDEKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTG 240

Query: 281 ELIDLGVKASI 291
           ELI +     I
Sbjct: 241 ELIKIATDLDI 251


>gi|224139890|ref|XP_002323326.1| predicted protein [Populus trichocarpa]
 gi|222867956|gb|EEF05087.1| predicted protein [Populus trichocarpa]
          Length = 323

 Score =  233 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 138/324 (42%), Positives = 209/324 (64%), Gaps = 3/324 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K  AL  AL+Q+   +G+ +++ L    +      V+S+GSL LD+ALGIGG PKGR+VE
Sbjct: 2   KDNALRLALTQLAGEFGRESMLSLQRFFNSRRA-PVISTGSLKLDLALGIGGLPKGRMVE 60

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYG E+SGKTTLALH I ++QK GG CA++D E+A+D +    +G++ +NLLIS PD  E
Sbjct: 61  IYGKEASGKTTLALHIIKEAQKLGGYCAYLDVENAMDPLLPESMGINTENLLISHPDCAE 120

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
             L + D L +SG+VD+IV+DSVAAL P+ EI+  +G +   +Q+RLM+QALRK+  S+ 
Sbjct: 121 NLLSVVDTLTKSGSVDVIVVDSVAALVPQREIDTAVGGTFEDIQSRLMTQALRKINYSLC 180

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +S+ +++F+NQ+R K      + E T GGNALKFYS+VRL + R   +K +D ITG    
Sbjct: 181 QSQTLIIFLNQVR-KSLKSGRAEEVTCGGNALKFYSAVRLRMIRTRLLKTEDRITGLGVC 239

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311
            +VVKNK+A    + E +I +G G     E+++L  + S++ K G+ +    +  G  R 
Sbjct: 240 AQVVKNKLAPAMTKAELEIQFGRGFCSESEVLELACEHSLIKKEGSSYVIGRKVFGNERV 299

Query: 312 NSKIFLRENIEIAENIESLLRQNA 335
            ++ +L EN  + + I + LR+  
Sbjct: 300 -AEQYLMENEGVHDQIVAKLREKL 322


>gi|158263155|gb|ABW24354.1| RecA [Streptococcus sinensis]
          Length = 251

 Score =  233 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 161/251 (64%), Positives = 203/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+
Sbjct: 61  HALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK    +KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDEKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTG 240

Query: 281 ELIDLGVKASI 291
           ELI +     I
Sbjct: 241 ELIKIATDLDI 251


>gi|158263103|gb|ABW24328.1| RecA [Streptococcus peroris ATCC 700780]
          Length = 251

 Score =  233 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 160/251 (63%), Positives = 201/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGSTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEALVEIMYGEGISRTG 240

Query: 281 ELIDLGVKASI 291
           EL+ +     I
Sbjct: 241 ELLKIASDLDI 251


>gi|6694835|gb|AAF25420.1|AF214773_1 RecA protein [Arthrobacter sp. 'SMCC ZAT014']
          Length = 230

 Score =  233 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 156/230 (67%), Positives = 191/230 (83%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           + LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA
Sbjct: 1   IALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDAEHALDPEYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            KLGVD   LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIEGDMG+S  
Sbjct: 61  AKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIEGDMGDSHV 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D
Sbjct: 121 GLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRID 180

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           +RR+ ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS  G +
Sbjct: 181 VRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQGISREGGI 230


>gi|158263033|gb|ABW24293.1| RecA [Streptococcus ferus]
          Length = 251

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 160/251 (63%), Positives = 203/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKDGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+G+MFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FYSSVRLD+R    IK     KDS  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYSSVRLDVRGNTQIKGTGDQKDSNIGKETKIKVVKNKIAPPFKEAFVEIMYGEGISRTG 240

Query: 281 ELIDLGVKASI 291
           EL+ +  +  I
Sbjct: 241 ELVKIASEQDI 251


>gi|306517549|emb|CBO93063.1| DNA recombinase A [Pantoea stewartii subsp. stewartii]
          Length = 228

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 161/226 (71%), Positives = 197/226 (87%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+GSL LDIALG GG P GRIVEIYGPE+SGKTTL L  IA +Q+ G TCAF+DAEHA
Sbjct: 1   TISTGSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIAAAQRKGKTCAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG+
Sbjct: 61  LDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           +G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY
Sbjct: 121 IGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFY 180

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +SVRLDIRR+G+IK+ D++ G++TRVKVVKNK+A+PFKQ EF IMY
Sbjct: 181 ASVRLDIRRIGAIKEGDNVVGSETRVKVVKNKIAAPFKQAEFQIMY 226


>gi|47109406|emb|CAG28699.1| recA [Propionibacterium freudenreichii subsp. shermanii]
          Length = 225

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 152/226 (67%), Positives = 184/226 (81%), Gaps = 2/226 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           G GA+M+LG Q   +  IE + +GS+ LDIALGIGG P+GRIVE+YGPESSGKTT+ALH 
Sbjct: 2   GAGAVMRLGDQA--YAQIESIPTGSVALDIALGIGGLPRGRIVEVYGPESSGKTTVALHA 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q  GG CAF+DAEHALD  YA  LGV+   LL+SQPD GEQALEI D LVRSGA++
Sbjct: 60  IANAQAEGGICAFIDAEHALDPSYAHALGVNTDELLVSQPDNGEQALEIADTLVRSGALE 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++VIDSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T +I  +   ++FINQ+R KI
Sbjct: 120 LLVIDSVAALTPRAEIEGEMGDSHVGLQARLMSQALRKMTGAIKSANTTVIFINQLREKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
           GVMFGSPETTTGG ALKFYSSVRLD+RR+ S+K+ + I GN+T  K
Sbjct: 180 GVMFGSPETTTGGRALKFYSSVRLDVRRIESLKNGNEIVGNRTHSK 225


>gi|158263073|gb|ABW24313.1| RecA [Streptococcus oligofermentans]
 gi|158263075|gb|ABW24314.1| RecA [Streptococcus oralis]
 gi|158263077|gb|ABW24315.1| RecA [Streptococcus oralis ATCC 35037]
 gi|158263079|gb|ABW24316.1| RecA [Streptococcus oralis]
 gi|158263081|gb|ABW24317.1| RecA [Streptococcus oralis]
 gi|158263083|gb|ABW24318.1| RecA [Streptococcus oralis]
 gi|158263085|gb|ABW24319.1| RecA [Streptococcus oralis]
 gi|158263087|gb|ABW24320.1| RecA [Streptococcus oralis]
 gi|158263089|gb|ABW24321.1| RecA [Streptococcus oralis]
 gi|158263091|gb|ABW24322.1| RecA [Streptococcus oralis]
 gi|158263097|gb|ABW24325.1| RecA [Streptococcus oralis]
 gi|315189790|gb|ADT89739.1| RecA protein [Streptococcus oralis]
 gi|315189792|gb|ADT89740.1| RecA protein [Streptococcus oralis]
 gi|315189794|gb|ADT89741.1| RecA protein [Streptococcus oralis]
 gi|315189798|gb|ADT89743.1| RecA protein [Streptococcus oralis]
 gi|315189800|gb|ADT89744.1| RecA protein [Streptococcus oralis]
 gi|315189802|gb|ADT89745.1| RecA protein [Streptococcus oralis]
 gi|315189804|gb|ADT89746.1| RecA protein [Streptococcus oralis]
 gi|315189806|gb|ADT89747.1| RecA protein [Streptococcus oralis]
 gi|315189808|gb|ADT89748.1| RecA protein [Streptococcus oralis]
 gi|315189810|gb|ADT89749.1| RecA protein [Streptococcus oralis]
          Length = 251

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 160/251 (63%), Positives = 201/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGSTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTG 240

Query: 281 ELIDLGVKASI 291
           EL+ +     I
Sbjct: 241 ELLKIASDLDI 251


>gi|158263063|gb|ABW24308.1| RecA [Streptococcus mitis]
 gi|315189754|gb|ADT89721.1| RecA protein [Streptococcus mitis]
          Length = 251

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 159/251 (63%), Positives = 201/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGSTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTG 240

Query: 281 ELIDLGVKASI 291
           EL+ +     I
Sbjct: 241 ELLKVASDLDI 251


>gi|315189796|gb|ADT89742.1| RecA protein [Streptococcus oralis]
          Length = 251

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 160/251 (63%), Positives = 201/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGSTQIKGTGDQKDTNIGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTG 240

Query: 281 ELIDLGVKASI 291
           EL+ +     I
Sbjct: 241 ELLKIASDLDI 251


>gi|306517557|emb|CBO93070.1| DNA recombinase A [Pantoea stewartii subsp. stewartii]
          Length = 229

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 161/226 (71%), Positives = 197/226 (87%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+GSL LDIALG GG P GRIVEIYGPE+SGKTTL L  IA +Q+ G TCAF+DAEHA
Sbjct: 1   TISTGSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIAAAQRKGKTCAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG+
Sbjct: 61  LDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           +G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY
Sbjct: 121 IGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFY 180

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +SVRLDIRR+G+IK+ D++ G++TRVKVVKNK+A+PFKQ EF IMY
Sbjct: 181 ASVRLDIRRIGAIKEGDNVVGSETRVKVVKNKIAAPFKQAEFQIMY 226


>gi|158263055|gb|ABW24304.1| RecA [Streptococcus massiliensis]
          Length = 251

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 159/251 (63%), Positives = 203/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+G+MFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK    +KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDEKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTG 240

Query: 281 ELIDLGVKASI 291
           ELI +     I
Sbjct: 241 ELIKIATDLDI 251


>gi|158262812|gb|ABW24183.1| RecA [Streptococcus cristatus ATCC 51100]
 gi|158263041|gb|ABW24297.1| RecA [Streptococcus gordonii]
          Length = 251

 Score =  232 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 161/251 (64%), Positives = 202/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+
Sbjct: 61  HALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIKD----KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDAKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTG 240

Query: 281 ELIDLGVKASI 291
           ELI +     I
Sbjct: 241 ELIKIATDLDI 251


>gi|315189788|gb|ADT89738.1| RecA protein [Streptococcus mitis]
          Length = 251

 Score =  232 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 160/251 (63%), Positives = 201/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRIVEIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGSGGYPKGRIVEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAIVEIMYGEGISKTG 240

Query: 281 ELIDLGVKASI 291
           EL+ +     I
Sbjct: 241 ELLKIASDLDI 251


>gi|158263151|gb|ABW24352.1| RecA [Streptococcus salivarius]
 gi|158263167|gb|ABW24360.1| RecA [Streptococcus vestibularis ATCC 49124]
          Length = 251

 Score =  232 bits (590), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 158/251 (62%), Positives = 201/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQTQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+G+MFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KD   G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDKKDQNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTG 240

Query: 281 ELIDLGVKASI 291
           EL+ +     I
Sbjct: 241 ELVKIASDLGI 251


>gi|306517559|emb|CBO93071.1| DNA recombinase A [Pantoea stewartii subsp. indologenes]
          Length = 233

 Score =  232 bits (590), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 161/226 (71%), Positives = 197/226 (87%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+GSL LDIALG GG P GRIVEIYGPE+SGKTTL L  IA +Q+ G TCAF+DAEHA
Sbjct: 4   TISTGSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIAAAQRKGKTCAFIDAEHA 63

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG+
Sbjct: 64  LDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGE 123

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           +G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY
Sbjct: 124 IGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFY 183

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +SVRLDIRR+G+IK+ D++ G++TRVKVVKNK+A+PFKQ EF IMY
Sbjct: 184 ASVRLDIRRIGAIKEGDNVVGSETRVKVVKNKIAAPFKQAEFQIMY 229


>gi|158263013|gb|ABW24283.1| RecA [Streptococcus australis]
          Length = 251

 Score =  232 bits (590), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 159/251 (63%), Positives = 201/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+
Sbjct: 61  HALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAMVEIMYGEGISRTG 240

Query: 281 ELIDLGVKASI 291
           EL+ +     +
Sbjct: 241 ELLKIATDLDL 251


>gi|315189772|gb|ADT89730.1| RecA protein [Streptococcus mitis]
          Length = 251

 Score =  232 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 158/251 (62%), Positives = 201/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++++SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQLMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGVAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGSTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTG 240

Query: 281 ELIDLGVKASI 291
           EL+ +     I
Sbjct: 241 ELLKIASDLDI 251


>gi|158262821|gb|ABW24187.1| RecA [Streptococcus pneumoniae]
 gi|158263107|gb|ABW24330.1| RecA [Streptococcus pneumoniae]
 gi|158263109|gb|ABW24331.1| RecA [Streptococcus pneumoniae]
 gi|158263113|gb|ABW24333.1| RecA [Streptococcus pneumoniae]
 gi|158263115|gb|ABW24334.1| RecA [Streptococcus pneumoniae]
 gi|158263117|gb|ABW24335.1| RecA [Streptococcus pneumoniae]
 gi|158263119|gb|ABW24336.1| RecA [Streptococcus pneumoniae]
 gi|158263123|gb|ABW24338.1| RecA [Streptococcus pneumoniae]
 gi|158263125|gb|ABW24339.1| RecA [Streptococcus pneumoniae]
 gi|158263127|gb|ABW24340.1| RecA [Streptococcus pneumoniae]
 gi|158263129|gb|ABW24341.1| RecA [Streptococcus pneumoniae]
 gi|158263131|gb|ABW24342.1| RecA [Streptococcus pneumoniae]
 gi|158263135|gb|ABW24344.1| RecA [Streptococcus pneumoniae]
 gi|315189812|gb|ADT89750.1| RecA protein [Streptococcus pneumoniae]
 gi|315189814|gb|ADT89751.1| RecA protein [Streptococcus pneumoniae]
 gi|315189818|gb|ADT89753.1| RecA protein [Streptococcus pneumoniae]
 gi|315189822|gb|ADT89755.1| RecA protein [Streptococcus pneumoniae]
          Length = 251

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 158/251 (62%), Positives = 201/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     K++  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTG 240

Query: 281 ELIDLGVKASI 291
           EL+ +     I
Sbjct: 241 ELLKIASDLDI 251


>gi|315189820|gb|ADT89754.1| RecA protein [Streptococcus pneumoniae]
          Length = 251

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 158/251 (62%), Positives = 201/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     K++  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKEAAVEIMYGEGISKTG 240

Query: 281 ELIDLGVKASI 291
           EL+ +     I
Sbjct: 241 ELLKIASDLDI 251


>gi|304334133|gb|ADM25144.1| recombinase A [Cupriavidus sp. pp2.3]
 gi|304334193|gb|ADM25174.1| recombinase A [Cupriavidus sp. pp2.43]
 gi|304334199|gb|ADM25177.1| recombinase A [Cupriavidus sp. mpp2.10]
 gi|304334211|gb|ADM25183.1| recombinase A [Cupriavidus sp. mpp1.13]
          Length = 233

 Score =  231 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 172/234 (73%), Positives = 208/234 (88%), Gaps = 1/234 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG  G + + I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ Q
Sbjct: 1   MRLGD-GEVEKDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGTCAF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVRSG++D+IVID
Sbjct: 60  KLGGTCAFIDAEHALDVNYASKLGVNVGDLLISQPDTGEQALEITDALVRSGSIDLIVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG
Sbjct: 120 SVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFG 179

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           SPETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T+VKVVKNK++ PF++ 
Sbjct: 180 SPETTTGGNALKFYASVRLDIRRIGSIKKGDDVIGNETKVKVVKNKVSPPFREA 233


>gi|323147049|gb|ADX32806.1| recombinase A [Burkholderia sp. 4682(2011)]
          Length = 229

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 160/217 (73%), Positives = 189/217 (87%), Gaps = 1/217 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AALSQI++ +GKG+IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 14  TAEKSKALAAALSQIEKQFGKGSIMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLPRGR 72

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 73  VVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYAGKLGVNVPELLISQPD 132

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 133 TGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 192

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKF
Sbjct: 193 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKF 229


>gi|15827469|ref|NP_301732.1| RecA protein [Mycobacterium leprae TN]
 gi|221229946|ref|YP_002503362.1| RecA protein [Mycobacterium leprae Br4923]
 gi|548715|sp|P35901|RECA_MYCLE RecName: Full=Protein RecA; AltName: Full=Recombinase A; Contains:
           RecName: Full=Mle RecA intein
 gi|397565|emb|CAA52040.1| recA [Mycobacterium leprae]
 gi|467094|gb|AAA17277.1| recA [Mycobacterium leprae]
 gi|13093019|emb|CAC31368.1| RecA protein [Mycobacterium leprae]
 gi|219933053|emb|CAR71082.1| RecA protein [Mycobacterium leprae Br4923]
          Length = 711

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 145/289 (50%), Positives = 195/289 (67%), Gaps = 20/289 (6%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR
Sbjct: 4   VPDREKALELAMAQIEKNYGKGSVMRLGDE--MCQPISVIPTGSIALDVALGIGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHAL+  YA+KLGVD  +LL+SQPD
Sbjct: 62  IVEIYGPESSGKTTVALHAVANAQAVGGVAAFIDAEHALEPEYAKKLGVDTDSLLVSQPD 121

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T 
Sbjct: 122 TGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSYVGLQARLMSQALRKMTG 181

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           ++S S    +FINQ+R KIGVMFG    +T           R+ +    + K    I  N
Sbjct: 182 ALSNSGTTAIFINQLREKIGVMFGCMNYST-----------RVTLADGSTEKIG-KIVNN 229

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           +  V+V+      P              +      +  ++   V+KSG+
Sbjct: 230 KMDVRVLS---YDPVTDRIVPRKVVNWFN--NGPAEQFLQF-TVEKSGS 272



 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 96/276 (34%), Positives = 142/276 (51%), Gaps = 11/276 (3%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
            SG+  + +  + +  +        D  H LD             L+ S   T +    I
Sbjct: 440 GSGRIEICVDAMTEGTRVRLRDYLCDT-HGLDVRLREVGSAGKAVLVFSTAATAKFQSLI 498

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
              +  S    ++          R  +     E    +    +     KL++       I
Sbjct: 499 APYVAPSMEYKLL-----PQFRGRGSVTPQFVEPTQQLVPARVLDVHVKLSTRSMNRFDI 553

Query: 197 LVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
            V  N      GVM   SPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+TRVK+V
Sbjct: 554 EVEGNHNYFVDGVMVHNSPETTTGGKALKFYASVRMDVRRIETLKDGVDAVGNRTRVKIV 613

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK++ PFKQ EFDI+YG+GIS  G LID+GV+   V KSG+WF+++G++LGQG+EN++ 
Sbjct: 614 KNKVSPPFKQAEFDILYGKGISREGSLIDMGVEQGFVRKSGSWFTYEGEQLGQGKENARN 673

Query: 316 FLRENIEIAENIESLLRQNAGLVA----DSLLQEPA 347
           FL EN ++A  IE  +++  G+ A    D +L  P 
Sbjct: 674 FLLENADVANEIEKKIKEKLGIGAVVTDDDILPTPV 709


>gi|158263121|gb|ABW24337.1| RecA [Streptococcus pneumoniae]
 gi|158263133|gb|ABW24343.1| RecA [Streptococcus pneumoniae]
 gi|315189816|gb|ADT89752.1| RecA protein [Streptococcus pneumoniae]
          Length = 251

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 157/251 (62%), Positives = 201/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G++  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDNHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     K++  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTG 240

Query: 281 ELIDLGVKASI 291
           EL+ +     I
Sbjct: 241 ELLKIASDLDI 251


>gi|304334135|gb|ADM25145.1| recombinase A [Cupriavidus sp. mapud10.1]
 gi|304334139|gb|ADM25147.1| recombinase A [Cupriavidus sp. tpig.6a]
 gi|304334141|gb|ADM25148.1| recombinase A [Cupriavidus sp. tpud28.1]
 gi|304334143|gb|ADM25149.1| recombinase A [Cupriavidus sp. mapud4.3]
 gi|304334145|gb|ADM25150.1| recombinase A [Cupriavidus sp. mapud8.1]
 gi|304334147|gb|ADM25151.1| recombinase A [Cupriavidus sp. tpud27.6]
 gi|304334151|gb|ADM25153.1| recombinase A [Cupriavidus sp. tpud23.3]
 gi|304334153|gb|ADM25154.1| recombinase A [Cupriavidus sp. mapud10.5]
 gi|304334155|gb|ADM25155.1| recombinase A [Cupriavidus sp. tpud17.3]
 gi|304334157|gb|ADM25156.1| recombinase A [Cupriavidus sp. tpud31.3]
 gi|304334179|gb|ADM25167.1| recombinase A [Cupriavidus sp. ip2.14]
 gi|304334181|gb|ADM25168.1| recombinase A [Cupriavidus sp. ip2.35]
 gi|304334183|gb|ADM25169.1| recombinase A [Cupriavidus sp. pp2.22]
 gi|304334185|gb|ADM25170.1| recombinase A [Cupriavidus sp. pp2.75]
 gi|304334187|gb|ADM25171.1| recombinase A [Cupriavidus sp. mip15]
 gi|304334189|gb|ADM25172.1| recombinase A [Cupriavidus sp. ip2.89]
 gi|304334191|gb|ADM25173.1| recombinase A [Cupriavidus sp. mip2]
 gi|304334195|gb|ADM25175.1| recombinase A [Cupriavidus sp. pp2.49]
 gi|304334197|gb|ADM25176.1| recombinase A [Cupriavidus sp. mpp1.6]
 gi|304334201|gb|ADM25178.1| recombinase A [Cupriavidus sp. mpp2.18]
 gi|304334203|gb|ADM25179.1| recombinase A [Cupriavidus sp. myp8]
 gi|304334205|gb|ADM25180.1| recombinase A [Cupriavidus sp. mym10]
 gi|304334207|gb|ADM25181.1| recombinase A [Cupriavidus sp. mpp1.16]
 gi|304334209|gb|ADM25182.1| recombinase A [Cupriavidus sp. mpp2.1]
 gi|304334213|gb|ADM25184.1| recombinase A [Cupriavidus sp. mpp1.1]
 gi|304334215|gb|ADM25185.1| recombinase A [Cupriavidus sp. mpp2.26]
          Length = 233

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 171/234 (73%), Positives = 208/234 (88%), Gaps = 1/234 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG  G + + I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ Q
Sbjct: 1   MRLGD-GEVEKDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGTCAF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVRSG++D+I+ID
Sbjct: 60  KLGGTCAFIDAEHALDVNYASKLGVNVGDLLISQPDTGEQALEITDALVRSGSIDLIIID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG
Sbjct: 120 SVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFG 179

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           SPETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T+VKVVKNK++ PF++ 
Sbjct: 180 SPETTTGGNALKFYASVRLDIRRIGSIKKGDDVIGNETKVKVVKNKVSPPFREA 233


>gi|12045198|ref|NP_073009.1| recombinase A [Mycoplasma genitalium G37]
 gi|255660434|ref|ZP_05405843.1| recombinase A [Mycoplasma genitalium G37]
 gi|1350563|sp|P47581|RECA_MYCGE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|3844921|gb|AAC71564.1| recA protein (recombinase A) [Mycoplasma genitalium G37]
 gi|166078678|gb|ABY79296.1| recA protein (recombinase A) [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 340

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 135/294 (45%), Positives = 192/294 (65%), Gaps = 1/294 (0%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
                  IE +S+GSL LD ALG GG P GRIVE+YG ESSGKTT+AL+ +A  QK G T
Sbjct: 31  DAKKNSEIETISTGSLNLDEALGSGGLPLGRIVELYGNESSGKTTIALNAVASFQKAGKT 90

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
             ++DAE ALD  YA+ +G+DL  LLI+ P  GE A  + + L+++  + +IVIDSVAAL
Sbjct: 91  ACYIDAEGALDLAYAKSIGIDLNKLLIAHPRHGENAFALIESLIKTNKISLIVIDSVAAL 150

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
            P+ E+EG + E   G+ AR+MS+ LR++ S +  SK  ++FINQ+R K GVMFG+ E T
Sbjct: 151 IPKQELEGTIEEQTIGLHARMMSKGLRRIQSILPDSKTCVLFINQLREKPGVMFGNNEVT 210

Query: 218 TGGNALKFYSSVRLDIRRVGSIKDK-DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276
           TGG AL+FYSS+R++ +RV  +KDK ++  G +T+V V KNK+A PF     +IM+  G 
Sbjct: 211 TGGKALRFYSSLRMEAKRVELLKDKFNNYVGIKTKVMVSKNKIAKPFGVAILEIMFNRGF 270

Query: 277 SFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
               E+IDL +K ++V ++G  +SF  + +  G+E     L E   + E I+ L
Sbjct: 271 VHEHEVIDLALKFNVVVRAGNSYSFNNESIAVGKEKLLNVLSEKPALFEQIKEL 324


>gi|304334159|gb|ADM25157.1| recombinase A [Cupriavidus sp. amp6]
 gi|304334161|gb|ADM25158.1| recombinase A [Cupriavidus sp. amp18]
 gi|304334163|gb|ADM25159.1| recombinase A [Cupriavidus sp. amp34]
 gi|304334165|gb|ADM25160.1| recombinase A [Cupriavidus sp. amp45]
 gi|304334169|gb|ADM25162.1| recombinase A [Cupriavidus sp. cmp29]
 gi|304334171|gb|ADM25163.1| recombinase A [Cupriavidus sp. cmp36]
          Length = 233

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 172/234 (73%), Positives = 208/234 (88%), Gaps = 1/234 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG  G + + I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ Q
Sbjct: 1   MRLGD-GEVEKDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGTCAF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVRSG++D+IVID
Sbjct: 60  KLGGTCAFIDAEHALDVSYAGKLGVNVGDLLISQPDTGEQALEITDALVRSGSIDLIVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG
Sbjct: 120 SVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFG 179

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           SPETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T+VKVVKNK++ PF++ 
Sbjct: 180 SPETTTGGNALKFYASVRLDIRRIGSIKKGDDVIGNETKVKVVKNKVSPPFREA 233


>gi|218678870|ref|ZP_03526767.1| recombinase A [Rhizobium etli CIAT 894]
          Length = 206

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 147/192 (76%), Positives = 173/192 (90%)

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           VAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVMFGS
Sbjct: 1   VAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVMFGS 60

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQTRVKVVKNKMA PFK VEFDIMYG
Sbjct: 61  PETTTGGNALKFYASVRLDIRRIGAVKEREEVIGNQTRVKVVKNKMAPPFKHVEFDIMYG 120

Query: 274 EGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           EG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQGREN+K FLR+N ++A  IE  LRQ
Sbjct: 121 EGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGRENAKTFLRDNPDLAREIELSLRQ 180

Query: 334 NAGLVADSLLQE 345
           NAGL+AD  LQ 
Sbjct: 181 NAGLIADRFLQN 192


>gi|158263137|gb|ABW24345.1| RecA [Streptococcus pseudopneumoniae]
 gi|158263139|gb|ABW24346.1| RecA [Streptococcus pseudopneumoniae ATCC BAA-960]
 gi|158263141|gb|ABW24347.1| RecA [Streptococcus pseudopneumoniae]
 gi|158263143|gb|ABW24348.1| RecA [Streptococcus pseudopneumoniae]
 gi|158263145|gb|ABW24349.1| RecA [Streptococcus pseudopneumoniae]
 gi|158263159|gb|ABW24356.1| RecA [Streptococcus pseudopneumoniae]
 gi|315189824|gb|ADT89756.1| RecA protein [Streptococcus pseudopneumoniae]
 gi|315189826|gb|ADT89757.1| RecA protein [Streptococcus pseudopneumoniae]
 gi|315189828|gb|ADT89758.1| RecA protein [Streptococcus pseudopneumoniae]
 gi|315189830|gb|ADT89759.1| RecA protein [Streptococcus pseudopneumoniae]
 gi|315189832|gb|ADT89760.1| RecA protein [Streptococcus pseudopneumoniae]
          Length = 251

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 158/251 (62%), Positives = 201/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     K++  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKETVVEIMYGEGISKTG 240

Query: 281 ELIDLGVKASI 291
           EL+ +     I
Sbjct: 241 ELLKIASDLDI 251


>gi|23194259|gb|AAN15077.1| RecA protein [Vibrio cholerae]
          Length = 235

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 163/235 (69%), Positives = 201/235 (85%)

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
           IALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLG
Sbjct: 1   IALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLG 60

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           V++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QA
Sbjct: 61  VNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQA 120

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           R++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR 
Sbjct: 121 RMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRT 180

Query: 237 GSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASI 291
           G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +
Sbjct: 181 GAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKM 235


>gi|304334173|gb|ADM25164.1| recombinase A [Cupriavidus sp. cmp52]
          Length = 233

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 172/234 (73%), Positives = 208/234 (88%), Gaps = 1/234 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG  G + + I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ Q
Sbjct: 1   MRLGD-GEVEKDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGTCAF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVRSG++D+IVID
Sbjct: 60  KLGGTCAFIDAEHALDVNYAGKLGVNVGDLLISQPDTGEQALEITDALVRSGSIDLIVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG
Sbjct: 120 SVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFG 179

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           SPETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T+VKVVKNK++ PF++ 
Sbjct: 180 SPETTTGGNALKFYASVRLDIRRIGSIKKGDDVIGNETKVKVVKNKVSPPFREA 233


>gi|304334137|gb|ADM25146.1| recombinase A [Cupriavidus sp. mapud3.4]
 gi|304334149|gb|ADM25152.1| recombinase A [Cupriavidus sp. mapud3.2]
 gi|304334167|gb|ADM25161.1| recombinase A [Cupriavidus sp. cmp2]
 gi|304334175|gb|ADM25165.1| recombinase A [Cupriavidus sp. cmp60]
 gi|304334177|gb|ADM25166.1| recombinase A [Cupriavidus sp. cmp57]
          Length = 233

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 172/234 (73%), Positives = 207/234 (88%), Gaps = 1/234 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG  G + + I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ Q
Sbjct: 1   MRLGD-GEVEKDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GGTCAF+DAEHALD  YA KLGV + +LLISQPDTGEQALEITD LVRSG++D+IVID
Sbjct: 60  KLGGTCAFIDAEHALDVNYASKLGVSVGDLLISQPDTGEQALEITDALVRSGSIDLIVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG
Sbjct: 120 SVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFG 179

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           SPETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+T+VKVVKNK++ PF++ 
Sbjct: 180 SPETTTGGNALKFYASVRLDIRRIGSIKKGDDVIGNETKVKVVKNKVSPPFREA 233


>gi|323147051|gb|ADX32807.1| recombinase A [Burkholderia sp. 4683(2011)]
          Length = 224

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 159/216 (73%), Positives = 188/216 (87%), Gaps = 1/216 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AALSQI++ +GKG+IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 10  TAEKSKALAAALSQIEKQFGKGSIMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLPRGR 68

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 69  VVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYAGKLGVNVPELLISQPD 128

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 129 TGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 188

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 189 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALK 224


>gi|47600829|emb|CAG29680.1| recombinase A [Propionibacterium microaerophilum]
          Length = 225

 Score =  230 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 152/226 (67%), Positives = 188/226 (83%), Gaps = 2/226 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           G GA+M+LG + ++   I  + +GS+ LD+ALG+GG P+GRIVEIYGPESSGKTT+ALH 
Sbjct: 2   GAGAVMRLGDRETV--KIPAIPTGSVALDVALGVGGLPRGRIVEIYGPESSGKTTVALHA 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q  GG CAF+DAEHALD  YA+ LGVD +NLLISQPD GEQALEI D LVRSGA++
Sbjct: 60  IANAQAEGGICAFIDAEHALDPEYAKNLGVDTENLLISQPDNGEQALEIADTLVRSGALE 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRK+T +++ +    +FINQ+R KI
Sbjct: 120 LIVIDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKMTGALNTAGTTAIFINQLREKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
           GVMFG+PETTTGG ALKFYSSVRLD+RR+ ++KD D + GN+TR K
Sbjct: 180 GVMFGNPETTTGGRALKFYSSVRLDVRRIQTLKDGDEMVGNRTRSK 225


>gi|158263007|gb|ABW24280.1| RecA [Streptococcus acidominimus]
          Length = 251

 Score =  230 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 156/251 (62%), Positives = 204/251 (81%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL +DIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLSIDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA+ LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAQALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G++G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GEIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVR+D+R    IK     KD+  G +T+VK+VKNK+A PFK+   +IMYG GIS  G
Sbjct: 181 FYASVRMDVRGNTQIKGSGDQKDTNVGKETKVKIVKNKVAPPFKEAVVEIMYGHGISQTG 240

Query: 281 ELIDLGVKASI 291
           EL+++G    I
Sbjct: 241 ELVEIGSNLGI 251


>gi|13508229|ref|NP_110178.1| recombinase A [Mycoplasma pneumoniae M129]
 gi|2500085|sp|P78014|RECA_MYCPN RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|1674029|gb|AAB96000.1| recombination protein RecA [Mycoplasma pneumoniae M129]
 gi|301633104|gb|ADK86658.1| RecA protein [Mycoplasma pneumoniae FH]
          Length = 336

 Score =  230 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 133/294 (45%), Positives = 192/294 (65%), Gaps = 1/294 (0%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
                  I+ VS+GSL LD ALG GG P GRIVE+YG ESSGKTT+ALH +A  QK G  
Sbjct: 30  DAKKNSEIKTVSTGSLHLDEALGTGGLPLGRIVELYGNESSGKTTVALHAVASFQKAGKV 89

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
             ++DAE ALD  YA+ +G+DL  LL++ P  GE A  + + L+++  V +IV+DSVAAL
Sbjct: 90  ACYIDAEGALDLSYAKAIGIDLGKLLVAHPKHGENAFALMESLIKTNKVALIVVDSVAAL 149

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
            P+ E+EG+M +   G+ AR+MS+ LR++ S +  S   L+FINQ+R K GVMFG+ E T
Sbjct: 150 IPKQELEGNMDDQTIGLHARMMSKGLRRVQSLLPESDTCLLFINQLREKPGVMFGNGEVT 209

Query: 218 TGGNALKFYSSVRLDIRRVGSIKDK-DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276
           TGG ALKFY+S+R++ +R   +KD+  +  G ++++ V KNK+A PF     +IM+  GI
Sbjct: 210 TGGRALKFYASMRMEAKRSELLKDRFGNYVGIKSKLTVSKNKVARPFGVAFLEIMFNRGI 269

Query: 277 SFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
            +  E+I+L +K ++V +S   +SFK Q +  G+E     L E  E+ E I+ L
Sbjct: 270 VYEHEVIELALKHNVVVRSDNAYSFKSQNIAIGKEKLFSVLAEKPELFEQIKQL 323


>gi|158263161|gb|ABW24357.1| RecA [Streptococcus suis]
          Length = 251

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 158/251 (62%), Positives = 202/251 (80%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL +DIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLSIDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKDGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL +SI+++K + +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVR+D+R    IK     KD   G +T+VK+VKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRMDVRGNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTG 240

Query: 281 ELIDLGVKASI 291
           ELI++G    I
Sbjct: 241 ELIEIGSNLGI 251


>gi|52630799|gb|AAU84867.1| RecA [Burkholderia phenazinium]
          Length = 230

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 170/230 (73%), Positives = 203/230 (88%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           GLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA 
Sbjct: 1   GLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAG 60

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
           KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG
Sbjct: 61  KLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPG 120

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
           +QARLMSQALRKLT +I R+ C+++FINQ+ MKIGVMFG+PETTTGGNALKFY+SVRLDI
Sbjct: 121 LQARLMSQALRKLTGTIKRTNCLVIFINQISMKIGVMFGNPETTTGGNALKFYASVRLDI 180

Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           RR+GSIK  D + GN+TRVKVVKNK+A PF++  FDI+YGEGIS  GE+I
Sbjct: 181 RRIGSIKKNDEVIGNETRVKVVKNKVAPPFREAIFDILYGEGISRQGEVI 230


>gi|157493183|gb|ABV57957.1| RecA [Vibrio cholerae]
 gi|157493189|gb|ABV57960.1| RecA [Vibrio cholerae]
          Length = 231

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 158/228 (69%), Positives = 196/228 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DA
Sbjct: 4   DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDA 63

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEI
Sbjct: 64  EHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEI 123

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 124 EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNAL 183

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           KFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IM
Sbjct: 184 KFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIM 231


>gi|157493171|gb|ABV57951.1| RecA [Vibrio cholerae]
          Length = 232

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 158/228 (69%), Positives = 196/228 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DA
Sbjct: 5   DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDA 64

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEI
Sbjct: 65  EHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEI 124

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 125 EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNAL 184

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           KFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IM
Sbjct: 185 KFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIM 232


>gi|157493211|gb|ABV57971.1| RecA [Vibrio mimicus]
          Length = 226

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 159/226 (70%), Positives = 196/226 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+M
Sbjct: 61  DPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG
Sbjct: 181 SVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYG 226


>gi|6694806|gb|AAF25391.1|AF214744_1 RecA protein [Arthrobacter sp. 'SMCC G960']
          Length = 226

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 154/226 (68%), Positives = 188/226 (83%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
            LD+ALGIGG P+GR++EIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA 
Sbjct: 1   ALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPDYAA 60

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
           KLGVD   LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIEGDMG+S  G
Sbjct: 61  KLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVG 120

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
           +QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+
Sbjct: 121 LQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDV 180

Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFF 279
           RR+ ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS  
Sbjct: 181 RRIQTLKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQGISRE 226


>gi|157493169|gb|ABV57950.1| RecA [Vibrio cholerae]
          Length = 229

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 158/228 (69%), Positives = 196/228 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DA
Sbjct: 2   DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEI
Sbjct: 62  EHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEI 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 122 EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNAL 181

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           KFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IM
Sbjct: 182 KFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIM 229


>gi|38091040|emb|CAE52525.1| recombination protein [Lactobacillus delbrueckii subsp. indicus]
          Length = 226

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 140/228 (61%), Positives = 186/228 (81%), Gaps = 2/228 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKGA+M++G +  +   I  V SGSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH 
Sbjct: 1   GKGAVMRMGEK--VDTQISTVPSGSLALDAALGVGGYPRGRIVEIYGPESSGKTTVALHA 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           +A+ QK GGT A++DAE+A+D  YA  LGVD+  L++SQP+TGE+ L+I D L+ SGA+D
Sbjct: 59  VAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDQLILSQPNTGEEGLQIADTLISSGAID 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           I+V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+
Sbjct: 119 IVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGTIAKTKTIAIFINQIREKV 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           GVMFG+PETT GG ALKFYS++RL++RR   IK   ++ GN+ ++KVV
Sbjct: 179 GVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSTNVIGNRVKIKVV 226


>gi|156106875|gb|ABU49637.1| RecA [Vibrio porteresiae]
          Length = 225

 Score =  229 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 159/223 (71%), Positives = 193/223 (86%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DA
Sbjct: 3   DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYARKLGV++  LL+SQPDTGEQALEI D L RSGAVD++V+DSVAALTP+AEI
Sbjct: 63  EHALDPIYARKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMVVDSVAALTPKAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QAR++SQA+RKLT ++  S C+ +FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 123 EGEMGDSHMGLQARMLSQAMRKLTGNLKASNCMCIFINQIRMKIGVMFGNPETTTGGNAL 182

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           KFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ 
Sbjct: 183 KFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEA 225


>gi|158263005|gb|ABW24279.1| RecA [Lactococcus lactis subsp. lactis]
          Length = 251

 Score =  229 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 154/251 (61%), Positives = 195/251 (77%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           + VVSSGSL LDIALG GG+PKGRIVEIYGPESSGKTT+ALH +A  QK GG  AF+DAE
Sbjct: 1   VSVVSSGSLALDIALGAGGYPKGRIVEIYGPESSGKTTVALHAVAAVQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD  YA+ LGV++  LL+SQPD GEQ L+I + L+ SGAVD++VIDSVAAL P+AEI+
Sbjct: 61  NALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAALVPKAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G++G+S  G+QAR+MSQA+RKL   I+++K   +FINQ+R K+GVMFGSPETT GG ALK
Sbjct: 121 GEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIKDK----DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    I++      +  G  T++KVVKNK+A PFK    DIM+GEGIS  G
Sbjct: 181 FYASVRLDVRGSTKIEEGSGDNKTQIGKITKIKVVKNKVAPPFKVALVDIMFGEGISRTG 240

Query: 281 ELIDLGVKASI 291
           EL+++ V   I
Sbjct: 241 ELLNIAVDEGI 251


>gi|157493205|gb|ABV57968.1| RecA [Vibrio mimicus]
          Length = 231

 Score =  229 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 157/227 (69%), Positives = 195/227 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DA
Sbjct: 5   DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDA 64

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEI
Sbjct: 65  EHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEI 124

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 125 EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNAL 184

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           KFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 185 KFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQI 231


>gi|157493177|gb|ABV57954.1| RecA [Vibrio cholerae]
 gi|157493185|gb|ABV57958.1| RecA [Vibrio cholerae]
 gi|157493187|gb|ABV57959.1| RecA [Vibrio cholerae]
          Length = 230

 Score =  229 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 157/227 (69%), Positives = 195/227 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DA
Sbjct: 4   DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDA 63

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEI
Sbjct: 64  EHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEI 123

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 124 EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNAL 183

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           KFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 184 KFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQI 230


>gi|157493207|gb|ABV57969.1| RecA [Vibrio mimicus]
          Length = 226

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 158/226 (69%), Positives = 195/226 (86%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHA
Sbjct: 1   TISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+
Sbjct: 61  LDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY
Sbjct: 121 MGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFY 180

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMY
Sbjct: 181 ASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMY 226


>gi|257812091|gb|ACV69913.1| RecA [Burkholderia cepacia]
          Length = 233

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 174/233 (74%), Positives = 206/233 (88%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LL
Sbjct: 1   LPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELL 60

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           ISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQAL
Sbjct: 61  ISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQAL 120

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D
Sbjct: 121 RKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKND 180

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
            + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK+G
Sbjct: 181 EVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAG 233


>gi|11245065|gb|AAG33434.1| RecA protein [Vibrio vulnificus]
 gi|11245109|gb|AAG33456.1| RecA protein [Vibrio vulnificus]
          Length = 233

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 162/231 (70%), Positives = 198/231 (85%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDQLLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           +IK+ D + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGV 
Sbjct: 181 AIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVN 231


>gi|158263111|gb|ABW24332.1| RecA [Streptococcus pneumoniae]
          Length = 251

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 157/251 (62%), Positives = 200/251 (79%), Gaps = 4/251 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+SSGSL LDIAL  GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAE
Sbjct: 1   VQVMSSGSLALDIALCSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+
Sbjct: 61  HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GD+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180

Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           FY+SVRLD+R    IK     K++  G +T++KVVKNK+A PFK+   +IMYGEGIS  G
Sbjct: 181 FYASVRLDVRGNTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTG 240

Query: 281 ELIDLGVKASI 291
           EL+ +     I
Sbjct: 241 ELLKIASDLDI 251


>gi|118767321|gb|ABL11496.1| RecA [Rhizobium sp. PEPSM14]
          Length = 201

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 157/199 (78%), Positives = 182/199 (91%), Gaps = 1/199 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P
Sbjct: 4   EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVIE-IETISTGSLGLDIALGVGGLP 62

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRI+EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 63  KGRIIEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 122

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 123 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 182

Query: 186 LTSSISRSKCILVFINQMR 204
           LT+SIS+S  +++FINQ+R
Sbjct: 183 LTASISKSNTMVIFINQVR 201


>gi|330466420|ref|YP_004404163.1| recA protein [Verrucosispora maris AB-18-032]
 gi|328809391|gb|AEB43563.1| recA protein [Verrucosispora maris AB-18-032]
          Length = 712

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 130/209 (62%), Positives = 166/209 (79%), Gaps = 2/209 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KAL+ AL+QI + +GKG++M+LG +  +   I  + +GS+ LD+ALG+GG P+GR+
Sbjct: 5   PDREKALDLALAQIDKQFGKGSVMRLGERPVVQTAI--IPTGSIALDVALGVGGLPRGRV 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA+ LGVD   LL+SQPDT
Sbjct: 63  IEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPEYAKALGVDTDALLVSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T  
Sbjct: 123 GEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGV 182

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTT 218
           ++ +    +FINQ+R KIGVMFG    +T
Sbjct: 183 LNNTGTTAIFINQLREKIGVMFGCMSYST 211



 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 82/167 (49%), Positives = 119/167 (71%)

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           E +  + AR++   ++  T S++R    +   +   +   ++  SPETTTGG ALKFY+S
Sbjct: 526 EEIMPVPARIIDVRVKPKTRSMNRFDIEVEGNHNYFVDGVMVHNSPETTTGGRALKFYAS 585

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           VRLD+RR+ S+KD   + GN+TRVKVVKNK+ASPFKQ EFDIMYG+GIS  G LID+GV+
Sbjct: 586 VRLDVRRIESLKDGTDVVGNRTRVKVVKNKVASPFKQAEFDIMYGKGISREGSLIDVGVE 645

Query: 289 ASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
            +I+ KSGAW++++G +LGQG+E ++ FLREN ++A  IE  + +  
Sbjct: 646 QAIIRKSGAWYTYEGDQLGQGKEKAREFLRENPDVAAEIEKKILEKL 692


>gi|52630797|gb|AAU84866.1| RecA [Burkholderia phymatum STM815]
          Length = 231

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 170/231 (73%), Positives = 204/231 (88%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           GLDIALG+GG P+GR+VEIYGPESSGKTTL L   A+ QK GGT AF+DAEHALD  YA+
Sbjct: 1   GLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVGAEMQKLGGTAAFIDAEHALDIQYAQ 60

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
           KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG
Sbjct: 61  KLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPG 120

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
           +QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDI
Sbjct: 121 LQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDI 180

Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           RR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGE IS  GE+ID
Sbjct: 181 RRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGESISRQGEIID 231


>gi|11245183|gb|AAG33493.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 162/230 (70%), Positives = 197/230 (85%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEIYGPESSGKTTL L  I+ +Q+ G TCAF+DAEHALD +YAR+LGV
Sbjct: 1   ALGAGGLPMGRIVEIYGPESSGKTTLTLELISAAQREGKTCAFIDAEHALDPVYARRLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
            +  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  KIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           SIK+ D + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELI+LGV
Sbjct: 181 SIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIELGV 230


>gi|11245009|gb|AAG33406.1| RecA protein [Vibrio cholerae]
 gi|11245049|gb|AAG33426.1| RecA protein [Vibrio cholerae]
 gi|11245083|gb|AAG33443.1| RecA protein [Vibrio cholerae]
 gi|11245093|gb|AAG33448.1| RecA protein [Vibrio cholerae]
 gi|11245095|gb|AAG33449.1| RecA protein [Vibrio cholerae]
 gi|11245133|gb|AAG33468.1| RecA protein [Vibrio cholerae]
 gi|11245169|gb|AAG33486.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 161/231 (69%), Positives = 198/231 (85%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGV 
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVN 231


>gi|323710232|gb|ADY03050.1| RecA [Escherichia coli]
          Length = 228

 Score =  228 bits (581), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 160/228 (70%), Positives = 202/228 (88%)

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTGEQA
Sbjct: 1   GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQA 60

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S
Sbjct: 61  LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS 120

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
             +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++TRVK
Sbjct: 121 NTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVK 180

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
           VVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+
Sbjct: 181 VVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSY 228


>gi|47109412|emb|CAG28702.1| recA [Propionibacterium jensenii]
          Length = 224

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 151/225 (67%), Positives = 187/225 (83%), Gaps = 2/225 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           +GA+M+LG + ++   I  + +GS+ LD+ALG+GG P+GRIVEIYGPESSGKTT+ALH I
Sbjct: 2   RGAVMRLGERETV--KIPAIPTGSVALDVALGVGGLPRGRIVEIYGPESSGKTTVALHAI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q  GG CAF+DAEHALD  YA+ LGVD  NLLISQPD GEQALEI D LVRSGA+++
Sbjct: 60  ANAQAEGGVCAFIDAEHALDPEYAKNLGVDTDNLLISQPDNGEQALEIADTLVRSGALEL 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           IVIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRK+T +++ +    +FINQ+R KIG
Sbjct: 120 IVIDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKMTGALNAAGTTAIFINQLREKIG 179

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
           VMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD D + GN+TR K
Sbjct: 180 VMFGSPETTTGGRALKFYASVRLDVRRIQTLKDGDEMVGNRTRAK 224


>gi|11245021|gb|AAG33412.1| RecA protein [Vibrio cholerae MO10]
          Length = 234

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 161/231 (69%), Positives = 198/231 (85%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGV 
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVN 231


>gi|11244977|gb|AAG33390.1| RecA protein [Vibrio cholerae]
 gi|11244993|gb|AAG33398.1| RecA protein [Vibrio cholerae]
 gi|11244999|gb|AAG33401.1| RecA protein [Vibrio cholerae]
 gi|11245023|gb|AAG33413.1| RecA protein [Vibrio cholerae]
 gi|11245173|gb|AAG33488.1| RecA protein [Vibrio mimicus]
          Length = 234

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 161/233 (69%), Positives = 198/233 (84%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS 290
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGV   
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVNTK 233


>gi|11245113|gb|AAG33458.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 161/231 (69%), Positives = 197/231 (85%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           +IK+ + + GN+TR+KVVKNK+A+PFK     IMYG+G +  GELIDLGV 
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKXANTQIMYGQGFNREGELIDLGVN 231


>gi|37956378|gb|AAP15363.1| RecA [Pelobacter acetylenicus]
          Length = 217

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 133/209 (63%), Positives = 174/209 (83%), Gaps = 1/209 (0%)

Query: 3   YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
           + + M   ++ +A++ A+SQI++ +GKG+IM+LG    +   +  + +G+L LDIALG+G
Sbjct: 9   WMRSMTTDNRERAIDLAMSQIEKQFGKGSIMRLGEDA-VVPDVATIPTGALSLDIALGVG 67

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G P+GR++EIYGPESSGKTTLALH +A++QK GG  AFVDAEHALD  YARKLGV   +L
Sbjct: 68  GIPRGRVIEIYGPESSGKTTLALHIVAEAQKKGGIAAFVDAEHALDIHYARKLGVRTDDL 127

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           L+SQPDTGEQALEIT++LVRSGA+D++VIDSVAAL PRAEIEG+MG++  G+QARLMSQA
Sbjct: 128 LVSQPDTGEQALEITEVLVRSGAIDVLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQA 187

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMF 211
           LRKLT +IS+S C ++FINQ+RMKIGVMF
Sbjct: 188 LRKLTGTISKSNCCVIFINQIRMKIGVMF 216


>gi|52630811|gb|AAU84873.1| RecA [Burkholderia tuberum STM678]
          Length = 238

 Score =  228 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 164/238 (68%), Positives = 199/238 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+VVS GS GLDIALG+GG P  R++EIY PESSGKTTL L   A+ Q+ GGT AF+DAE
Sbjct: 1   IQVVSIGSRGLDIALGVGGLPSARLIEIYAPESSGKTTLTLQVCAEMQELGGTAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVA L P+AEIE
Sbjct: 61  HALDIQYAGKLGVNVADLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAPLVPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+M +SLPG+QAR MSQA+RK T +I R+  +++FINQ+RMKIGVMF +PETTTGGNA K
Sbjct: 121 GEMADSLPGLQARPMSQAMRKRTGTIKRTNSLVIFINQIRMKIGVMFANPETTTGGNAPK 180

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           FY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A PF++  FDI+YGEGIS  GE+
Sbjct: 181 FYASVRLDIRRIGSIKKNDELIGNETRVKVVKNKVAPPFREAIFDILYGEGISRQGEI 238


>gi|11245037|gb|AAG33420.1| RecA protein [Vibrio cholerae]
 gi|11245061|gb|AAG33432.1| RecA protein [Vibrio cholerae]
 gi|11245073|gb|AAG33438.1| RecA protein [Vibrio cholerae]
 gi|11245077|gb|AAG33440.1| RecA protein [Vibrio cholerae]
 gi|11245091|gb|AAG33447.1| RecA protein [Vibrio cholerae]
 gi|11245101|gb|AAG33452.1| RecA protein [Vibrio cholerae]
 gi|11245111|gb|AAG33457.1| RecA protein [Vibrio cholerae]
 gi|11245115|gb|AAG33459.1| RecA protein [Vibrio cholerae]
 gi|11245135|gb|AAG33469.1| RecA protein [Vibrio cholerae]
 gi|11245155|gb|AAG33479.1| RecA protein [Vibrio cholerae]
 gi|11245171|gb|AAG33487.1| RecA protein [Vibrio cholerae]
 gi|11245175|gb|AAG33489.1| RecA protein [Vibrio cholerae]
 gi|11245177|gb|AAG33490.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  228 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 161/231 (69%), Positives = 198/231 (85%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGV 
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVN 231


>gi|11244963|gb|AAG33383.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 160/231 (69%), Positives = 197/231 (85%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  I  +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIXAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGV 
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVN 231


>gi|11244987|gb|AAG33395.1| RecA protein [Vibrio cholerae]
 gi|11245003|gb|AAG33403.1| RecA protein [Vibrio cholerae]
 gi|11245005|gb|AAG33404.1| RecA protein [Vibrio cholerae]
 gi|11245089|gb|AAG33446.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 161/233 (69%), Positives = 198/233 (84%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS 290
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGV   
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVNTK 233


>gi|11244965|gb|AAG33384.1| RecA protein [Vibrio cholerae]
 gi|11244975|gb|AAG33389.1| RecA protein [Vibrio cholerae]
 gi|11244979|gb|AAG33391.1| RecA protein [Vibrio cholerae]
 gi|11244981|gb|AAG33392.1| RecA protein [Vibrio cholerae]
 gi|11244983|gb|AAG33393.1| RecA protein [Vibrio cholerae]
 gi|11245015|gb|AAG33409.1| RecA protein [Vibrio cholerae]
 gi|11245017|gb|AAG33410.1| RecA protein [Vibrio cholerae]
 gi|11245029|gb|AAG33416.1| RecA protein [Vibrio cholerae]
 gi|11245031|gb|AAG33417.1| RecA protein [Vibrio cholerae]
 gi|11245039|gb|AAG33421.1| RecA protein [Vibrio cholerae]
 gi|11245041|gb|AAG33422.1| RecA protein [Vibrio cholerae]
 gi|11245047|gb|AAG33425.1| RecA protein [Vibrio cholerae]
 gi|11245051|gb|AAG33427.1| RecA protein [Vibrio cholerae]
 gi|11245053|gb|AAG33428.1| RecA protein [Vibrio cholerae]
 gi|11245057|gb|AAG33430.1| RecA protein [Vibrio cholerae]
 gi|11245059|gb|AAG33431.1| RecA protein [Vibrio cholerae]
 gi|11245071|gb|AAG33437.1| RecA protein [Vibrio cholerae]
 gi|11245075|gb|AAG33439.1| RecA protein [Vibrio cholerae]
 gi|11245079|gb|AAG33441.1| RecA protein [Vibrio cholerae]
 gi|11245081|gb|AAG33442.1| RecA protein [Vibrio cholerae]
 gi|11245085|gb|AAG33444.1| RecA protein [Vibrio cholerae]
 gi|11245087|gb|AAG33445.1| RecA protein [Vibrio cholerae]
 gi|11245097|gb|AAG33450.1| RecA protein [Vibrio cholerae]
 gi|11245099|gb|AAG33451.1| RecA protein [Vibrio cholerae]
 gi|11245103|gb|AAG33453.1| RecA protein [Vibrio cholerae]
 gi|11245117|gb|AAG33460.1| RecA protein [Vibrio cholerae]
 gi|11245121|gb|AAG33462.1| RecA protein [Vibrio cholerae]
 gi|11245123|gb|AAG33463.1| RecA protein [Vibrio cholerae]
 gi|11245125|gb|AAG33464.1| RecA protein [Vibrio cholerae]
 gi|11245127|gb|AAG33465.1| RecA protein [Vibrio cholerae]
 gi|11245129|gb|AAG33466.1| RecA protein [Vibrio cholerae]
 gi|11245131|gb|AAG33467.1| RecA protein [Vibrio cholerae]
 gi|11245137|gb|AAG33470.1| RecA protein [Vibrio cholerae]
 gi|11245139|gb|AAG33471.1| RecA protein [Vibrio cholerae]
 gi|11245141|gb|AAG33472.1| RecA protein [Vibrio cholerae]
 gi|11245147|gb|AAG33475.1| RecA protein [Vibrio cholerae]
 gi|11245163|gb|AAG33483.1| RecA protein [Vibrio cholerae]
 gi|11245181|gb|AAG33492.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 161/231 (69%), Positives = 198/231 (85%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGV 
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVN 231


>gi|11245001|gb|AAG33402.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 162/231 (70%), Positives = 198/231 (85%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPIYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGV 
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVN 231


>gi|255586516|ref|XP_002533897.1| DNA repair protein reca, putative [Ricinus communis]
 gi|223526148|gb|EEF28487.1| DNA repair protein reca, putative [Ricinus communis]
          Length = 388

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 138/333 (41%), Positives = 211/333 (63%), Gaps = 6/333 (1%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           +   ++K   L  AL +I   + + +++ L    S  +   V+S+GSL LD+ALGIGG P
Sbjct: 58  DSEAMEKHNKLFLALKEISGEFCRESMLSLHRFFSSRQA-SVISTGSLKLDLALGIGGLP 116

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR+VEIYG E+SGKTTLALH I ++QK GG CA++DAE+ALD      +GV+ +NLLIS
Sbjct: 117 KGRMVEIYGQEASGKTTLALHIIKEAQKCGGYCAYLDAENALDPSLVESMGVNTENLLIS 176

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
            PD+ E  L + D L +SG+VD+IV+DSVAAL P+ E++  +G S    Q+R+MSQA+RK
Sbjct: 177 PPDSAENLLSVVDTLTKSGSVDVIVVDSVAALVPQLELDTMLG-STEDRQSRIMSQAVRK 235

Query: 186 LTSSISRSKCILVFINQMRMKIGVM---FGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           +  S+S+SK +++F+NQ+R  +          E T GGNALKFYS+VRL + R   +K +
Sbjct: 236 INYSLSQSKTLIIFLNQVRANVKSGQGLGQVDEATCGGNALKFYSAVRLRMARKALLKTE 295

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           D ITG +  V+VVKNK+A   K+ E  I +G G     E+++L  +  ++ + G+ +  +
Sbjct: 296 DEITGLRVSVQVVKNKLAPAMKKAELGIQFGRGFCSESEVLELACEYGVIRQEGSTYCIE 355

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
            +     +  ++ +L EN ++ + I   LR + 
Sbjct: 356 EEVFSN-KHAAEEYLAENYKVHDRIVRTLRTHL 387


>gi|11244985|gb|AAG33394.1| RecA protein [Vibrio cholerae]
 gi|11244989|gb|AAG33396.1| RecA protein [Vibrio cholerae]
 gi|11244997|gb|AAG33400.1| RecA protein [Vibrio cholerae]
 gi|11245007|gb|AAG33405.1| RecA protein [Vibrio cholerae]
 gi|11245011|gb|AAG33407.1| RecA protein [Vibrio cholerae]
 gi|11245013|gb|AAG33408.1| RecA protein [Vibrio cholerae]
 gi|11245027|gb|AAG33415.1| RecA protein [Vibrio cholerae]
 gi|11245033|gb|AAG33418.1| RecA protein [Vibrio cholerae]
 gi|11245035|gb|AAG33419.1| RecA protein [Vibrio cholerae]
 gi|11245045|gb|AAG33424.1| RecA protein [Vibrio cholerae]
 gi|11245055|gb|AAG33429.1| RecA protein [Vibrio cholerae]
 gi|11245105|gb|AAG33454.1| RecA protein [Vibrio cholerae]
 gi|11245143|gb|AAG33473.1| RecA protein [Vibrio cholerae]
 gi|11245145|gb|AAG33474.1| RecA protein [Vibrio cholerae]
 gi|11245149|gb|AAG33476.1| RecA protein [Vibrio cholerae]
 gi|11245151|gb|AAG33477.1| RecA protein [Vibrio cholerae]
 gi|11245153|gb|AAG33478.1| RecA protein [Vibrio mimicus]
 gi|11245157|gb|AAG33480.1| RecA protein [Vibrio cholerae]
 gi|11245165|gb|AAG33484.1| RecA protein [Vibrio mimicus]
 gi|11245167|gb|AAG33485.1| RecA protein [Vibrio mimicus]
          Length = 234

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 161/233 (69%), Positives = 198/233 (84%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS 290
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGV   
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVNTK 233


>gi|52630807|gb|AAU84871.1| RecA [Burkholderia terricola]
          Length = 222

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 167/222 (75%), Positives = 198/222 (89%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHA
Sbjct: 1   VVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKIGGTAAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+
Sbjct: 61  LDIQYAGKLGVNVNDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY
Sbjct: 121 MGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFY 180

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           +SVRLDIRR+GSIK  D + GN+TRVKVVKNK+A PF++  F
Sbjct: 181 ASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPPFREAIF 222


>gi|47600831|emb|CAG29681.1| recombinase A [Propionibacterium thoenii]
          Length = 221

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 150/222 (67%), Positives = 184/222 (82%), Gaps = 2/222 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           G GA+M+LG + ++   I  + +GS+ LD+ALG+GG P+GRIVEIYGPESSGKTT+ALH 
Sbjct: 2   GAGAVMRLGERETV--KIPAIPTGSVALDVALGVGGLPRGRIVEIYGPESSGKTTVALHA 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q  GG CAF+DAEHALD  YA+ LGVD  NLLISQPD GEQALEI D LVRSGA++
Sbjct: 60  IANAQAEGGVCAFIDAEHALDPEYAKNLGVDTDNLLISQPDNGEQALEIADTLVRSGALE 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRK+T ++S +    +FINQ+R KI
Sbjct: 120 LIVIDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKMTGALSGAGTTAIFINQLREKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           GVMFG+PETTTGG ALKFYSSVRLD+RR+ ++KD D + GN+
Sbjct: 180 GVMFGNPETTTGGRALKFYSSVRLDVRRIQTLKDGDEMVGNR 221


>gi|308171320|gb|ADO15979.1| RecA [Vibrio brasiliensis LMG 20546]
          Length = 231

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 161/231 (69%), Positives = 198/231 (85%)

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTL L  IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQP
Sbjct: 1   RIVEIYGPESSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQP 60

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT
Sbjct: 61  DTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLT 120

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + G
Sbjct: 121 GNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVG 180

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           N+TR+KVVKNK+A+PFKQ E  I+YG G +  GELIDLGVK  +++K+  W
Sbjct: 181 NETRIKVVKNKIAAPFKQAETQILYGAGFNREGELIDLGVKHKLIEKAAPW 231


>gi|11245119|gb|AAG33461.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  227 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 160/230 (69%), Positives = 194/230 (84%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEIYGPESSGKTTL L  I+ +Q+ G TCAF+DAEHALD +YAR+LGV
Sbjct: 1   ALGAGGLPMGRIVEIYGPESSGKTTLTLELISAAQREGKTCAFIDAEHALDPVYARRLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
            +  LL+S PDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  KIDELLVSXPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           SIK+ D + GN+TR+KVVKNK  +PFK+    IMYG+G +  GELI+LGV
Sbjct: 181 SIKEGDEVVGNETRIKVVKNKXXAPFKEANTQIMYGQGFNREGELIELGV 230


>gi|11244971|gb|AAG33387.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  227 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 161/231 (69%), Positives = 197/231 (85%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           +IK+ + + GN+TR+KVVKNK+A+PFK     IMYG+G +  GELIDLGV 
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKXANTQIMYGQGFNRXGELIDLGVN 231


>gi|38091042|emb|CAE52526.1| recombination protein [Lactobacillus delbrueckii subsp. indicus]
          Length = 226

 Score =  227 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 139/228 (60%), Positives = 185/228 (81%), Gaps = 2/228 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKGA+M++G +  +   I  V SGSL LD ALG+GG+P+GRIVEIY PESSGKTT+ALH 
Sbjct: 1   GKGAVMRMGEK--VDTQISTVPSGSLALDAALGVGGYPRGRIVEIYXPESSGKTTVALHA 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           +A+ QK GGT A++DAE+A+D  YA  LGVD+  L++SQP+TGE+ L+I D L+ SGA+D
Sbjct: 59  VAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDQLILSQPNTGEEGLQIADTLISSGAID 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           I+V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+
Sbjct: 119 IVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGTIAKTKTIAIFINQIREKV 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           GVMFG+PETT GG ALKFYS++RL++RR   IK   ++ GN+ ++KVV
Sbjct: 179 GVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSTNVIGNRVKIKVV 226


>gi|11245043|gb|AAG33423.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  227 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 161/231 (69%), Positives = 197/231 (85%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G    GELIDLGV 
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFXREGELIDLGVN 231


>gi|260182094|gb|ACX35581.1| replication-repair protein [Vibrio harveyi]
          Length = 227

 Score =  227 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 156/227 (68%), Positives = 196/227 (86%)

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQ
Sbjct: 1   YGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQ 60

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +
Sbjct: 61  ALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQ 120

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+
Sbjct: 121 SNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRI 180

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+K+GAW+
Sbjct: 181 KVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWY 227


>gi|157493197|gb|ABV57964.1| RecA [Vibrio mimicus]
 gi|157493199|gb|ABV57965.1| RecA [Vibrio mimicus]
 gi|157493203|gb|ABV57967.1| RecA [Vibrio mimicus]
          Length = 225

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 157/225 (69%), Positives = 194/225 (86%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHA
Sbjct: 1   TISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+
Sbjct: 61  LDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY
Sbjct: 121 MGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFY 180

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           +SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IM
Sbjct: 181 ASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIM 225


>gi|11245107|gb|AAG33455.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 161/231 (69%), Positives = 198/231 (85%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGV 
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNRXGELIDLGVN 231


>gi|311692215|dbj|BAJ25722.1| recombinase A [Rhizobium sp. I111]
 gi|311692231|dbj|BAJ25730.1| recombinase A [Rhizobium sp. I321]
 gi|311692233|dbj|BAJ25731.1| recombinase A [Rhizobium sp. O111]
 gi|311692239|dbj|BAJ25734.1| recombinase A [Rhizobium sp. T111]
 gi|311692243|dbj|BAJ25736.1| recombinase A [Rhizobium sp. T151]
 gi|311692245|dbj|BAJ25737.1| recombinase A [Rhizobium sp. T211]
 gi|311692247|dbj|BAJ25738.1| recombinase A [Rhizobium sp. H111]
 gi|311692251|dbj|BAJ25740.1| recombinase A [Rhizobium leguminosarum bv. viciae]
          Length = 191

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 151/192 (78%), Positives = 178/192 (92%), Gaps = 1/192 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKCILVFINQM 203
           +S  +++FINQ+
Sbjct: 180 KSNTMVIFINQI 191


>gi|11245185|gb|AAG33494.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  226 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 160/233 (68%), Positives = 198/233 (84%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           A+G GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   AIGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS 290
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGV   
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVNTK 233


>gi|311692249|dbj|BAJ25739.1| recombinase A [Rhizobium leguminosarum bv. viciae]
          Length = 191

 Score =  226 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 152/192 (79%), Positives = 178/192 (92%), Gaps = 1/192 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKCILVFINQM 203
           +S  +++FINQ+
Sbjct: 180 KSNTMVIFINQI 191


>gi|157493195|gb|ABV57963.1| RecA [Vibrio mimicus]
 gi|157493201|gb|ABV57966.1| RecA [Vibrio mimicus]
          Length = 224

 Score =  226 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 156/224 (69%), Positives = 193/224 (86%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHA
Sbjct: 1   TISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+
Sbjct: 61  LDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY
Sbjct: 121 MGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFY 180

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           +SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 181 ASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQI 224


>gi|11244995|gb|AAG33399.1| RecA protein [Vibrio mimicus]
          Length = 234

 Score =  226 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 160/233 (68%), Positives = 197/233 (84%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GP SSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPXSSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS 290
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGV   
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVNTK 233


>gi|311692227|dbj|BAJ25728.1| recombinase A [Rhizobium sp. I313]
          Length = 191

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 152/192 (79%), Positives = 178/192 (92%), Gaps = 1/192 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKCILVFINQM 203
           +S  ++VFINQ+
Sbjct: 180 KSNTMVVFINQI 191


>gi|11245159|gb|AAG33481.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 160/231 (69%), Positives = 197/231 (85%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPES GKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESXGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGV 
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVN 231


>gi|157493227|gb|ABV57979.1| RecA [Vibrio cholerae]
          Length = 222

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 155/220 (70%), Positives = 192/220 (87%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHA
Sbjct: 1   TISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+
Sbjct: 61  LDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY
Sbjct: 121 MGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFY 180

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           +SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ 
Sbjct: 181 ASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEA 220


>gi|323147067|gb|ADX32815.1| recombinase A [endophytic bacterium 19(2011)]
          Length = 220

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 161/221 (72%), Positives = 196/221 (88%), Gaps = 1/221 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +KSKAL AAL+QI++ +GKG++M+LG  G + E I+VVS+GSLGLDIALG+GG P+GR+
Sbjct: 1   AEKSKALAAALAQIEKQFGKGSVMRLG-AGEVVEDIQVVSTGSLGLDIALGVGGLPRGRV 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDT
Sbjct: 60  VEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +
Sbjct: 120 GEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGT 179

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
           I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR
Sbjct: 180 IKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVR 220


>gi|312273248|gb|ADQ56979.1| recombinase A [Vibrio sp. PS0705-5A3]
          Length = 230

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 162/230 (70%), Positives = 200/230 (86%)

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQP
Sbjct: 1   RIVEVYGPESSGKTTLTLELIAAAQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQP 60

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D L RSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT
Sbjct: 61  DTGEQALEICDALARSGAIDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLT 120

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + G
Sbjct: 121 GNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVG 180

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           N+TR+KVVKNK+A+PFKQ E  I+YG+G +  GEL+DLGVK  +V+K+GA
Sbjct: 181 NETRIKVVKNKIAAPFKQAETQILYGQGFNREGELVDLGVKNKLVEKAGA 230


>gi|114767541|ref|ZP_01446295.1| recombinase A [Pelagibaca bermudensis HTCC2601]
 gi|114540394|gb|EAU43480.1| recombinase A [Roseovarius sp. HTCC2601]
          Length = 213

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 145/213 (68%), Positives = 178/213 (83%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +RSGAV ++V+DSVAALTP++E+EGDMG+S  G+QARLMSQA+RKLT SISRS C+++FI
Sbjct: 1   MRSGAVSLVVVDSVAALTPKSELEGDMGDSNVGVQARLMSQAMRKLTGSISRSNCMVIFI 60

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D + GNQTRVKVVKNK+A
Sbjct: 61  NQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRDEVVGNQTRVKVVKNKVA 120

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
            PFKQVEFDIMYGEGIS  GEL+DLGVKA +VDKSGAW+S+  +R+GQGREN+K FLREN
Sbjct: 121 PPFKQVEFDIMYGEGISKMGELLDLGVKAGVVDKSGAWYSYGDERIGQGRENAKTFLREN 180

Query: 321 IEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
             ++  IE  +R   GL      ++   +  + 
Sbjct: 181 SRVSLEIEDKIRAAHGLDFHMSEEDGGDDVMES 213


>gi|262272843|gb|ACY40641.1| RecA [Leptotrichia shahii]
          Length = 239

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 155/239 (64%), Positives = 197/239 (82%), Gaps = 3/239 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+GSL LDIALGIGG P+GRIVEIYG ESSGKTTLALH IA++QK GGT AF+DAEHA
Sbjct: 1   AISTGSLNLDIALGIGGVPRGRIVEIYGAESSGKTTLALHIIAEAQKAGGTVAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YA+ LGV++  LLISQPDTGEQALEI+DMLVRSGA+D+IV+DSVAAL P+AEIEG+
Sbjct: 61  LDPVYAKALGVNIDELLISQPDTGEQALEISDMLVRSGAMDVIVVDSVAALVPKAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI---GVMFGSPETTTGGNAL 223
           MG+   G+QARLMS+ALRKLT +I++S  +++FINQ+R KI       G   TT+GG AL
Sbjct: 121 MGDQQMGLQARLMSKALRKLTGTIAKSDTVMIFINQIREKIGGFSFTPGPQTTTSGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           KF+S+VR++++RVGS+K  D + GN+  VKV KNK+A PFK+  F++MYG+GIS  GE+
Sbjct: 181 KFFSTVRMEVKRVGSVKQGDDVIGNEVLVKVTKNKVAPPFKEARFNVMYGQGISRIGEV 239


>gi|262272845|gb|ACY40642.1| RecA [Leptotrichia wadei]
          Length = 239

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 154/239 (64%), Positives = 196/239 (82%), Gaps = 3/239 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+GSL LDIALG+GG P+GRI+EIYG ESSGKTTLALH IA++QK GGT AF+DAEHA
Sbjct: 1   AISTGSLNLDIALGVGGVPRGRIIEIYGAESSGKTTLALHIIAEAQKAGGTVAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YA+ LGV++  LLISQPDTGEQALEI+DMLVRSGA+D+IV+DSVAAL P+AEIEG+
Sbjct: 61  LDPVYAKALGVNIDELLISQPDTGEQALEISDMLVRSGAMDVIVVDSVAALVPKAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI---GVMFGSPETTTGGNAL 223
           MG+   G+QARLMS+ALRKLT SI++S  +++FINQ+R KI       G   TT+GG AL
Sbjct: 121 MGDQQMGLQARLMSKALRKLTGSIAKSDTVMIFINQIREKIGGFSFTPGPQTTTSGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           KF+S+VR++++RVGS+K  D + GN+  VKV KNK+A PF++  F+IMYG GIS  GE+
Sbjct: 181 KFFSTVRMEVKRVGSVKQGDDVIGNEILVKVTKNKVAPPFREARFNIMYGTGISRIGEV 239


>gi|262064662|gb|ACY07565.1| recombinase A [Rhizobium sp. LCS0303]
          Length = 196

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 153/197 (77%), Positives = 179/197 (90%), Gaps = 1/197 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   V KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P
Sbjct: 1   EDKSVXKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLP 59

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 60  RGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 119

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 120 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 179

Query: 186 LTSSISRSKCILVFINQ 202
           LT+SIS+S  +++FINQ
Sbjct: 180 LTASISKSNTMVIFINQ 196


>gi|11245067|gb|AAG33435.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 160/233 (68%), Positives = 197/233 (84%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           A G GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   AFGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS 290
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGV   
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVNTK 233


>gi|52548226|gb|AAU82102.1| recombinase A [Pantoea ananatis]
          Length = 252

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 151/217 (69%), Positives = 185/217 (85%), Gaps = 2/217 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPE+SGKTTL L  
Sbjct: 1   GKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQRKGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKI
Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           GVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D+
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDN 215


>gi|157493173|gb|ABV57952.1| RecA [Vibrio cholerae]
          Length = 224

 Score =  225 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 157/224 (70%), Positives = 194/224 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+M
Sbjct: 61  DPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+    IM
Sbjct: 181 SVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIM 224


>gi|6694842|gb|AAF25427.1|AF214780_1 RecA protein [Arthrobacter globiformis]
          Length = 222

 Score =  225 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 154/222 (69%), Positives = 186/222 (83%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
            LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA 
Sbjct: 1   ALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEYAA 60

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
           KLGVD   LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEIEGDMG+S  G
Sbjct: 61  KLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIEGDMGDSHVG 120

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
           +QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+
Sbjct: 121 LQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDV 180

Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275
           RR+ ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+G
Sbjct: 181 RRIQTLKEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQG 222


>gi|312273252|gb|ADQ56981.1| recombinase A [Vibrio sp. PS0705-3A4]
 gi|312273254|gb|ADQ56982.1| recombinase A [Vibrio sp. K0706-35]
 gi|312273256|gb|ADQ56983.1| recombinase A [Vibrio sp. K0606-41]
          Length = 230

 Score =  225 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 158/230 (68%), Positives = 199/230 (86%)

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQP
Sbjct: 1   RIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQP 60

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT
Sbjct: 61  DTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLT 120

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + G
Sbjct: 121 GNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVG 180

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           N+TR+KVVKNK+A+PFK+    IMYG+G +  GEL+DLGVK  +V+K+GA
Sbjct: 181 NETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKAGA 230


>gi|312273258|gb|ADQ56984.1| recombinase A [Vibrio sp. K0406-01S]
          Length = 230

 Score =  225 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 159/230 (69%), Positives = 199/230 (86%)

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQP
Sbjct: 1   RIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQP 60

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT
Sbjct: 61  DTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLT 120

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + G
Sbjct: 121 GNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVG 180

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           N+TR+KVVKNK+A+PFK+    IMYG+G +  GEL+DLGVK  +V+K+GA
Sbjct: 181 NETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKAGA 230


>gi|312273084|gb|ADQ56897.1| recombinase A [Vibrio cholerae]
 gi|312273086|gb|ADQ56898.1| recombinase A [Vibrio cholerae]
 gi|312273090|gb|ADQ56900.1| recombinase A [Vibrio cholerae]
          Length = 230

 Score =  225 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 161/230 (70%), Positives = 199/230 (86%)

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQP
Sbjct: 1   RIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQP 60

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT
Sbjct: 61  DTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLT 120

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD + + G
Sbjct: 121 GNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVG 180

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           N+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGA
Sbjct: 181 NETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGA 230


>gi|11244973|gb|AAG33388.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  225 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 160/231 (69%), Positives = 197/231 (85%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           +IK+ + + GN+TR+KVVK K+A+PFK+    IMYG+G +  GELIDLGV 
Sbjct: 181 AIKEGEEVVGNETRIKVVKIKIAAPFKEANTQIMYGQGFNREGELIDLGVN 231


>gi|218189711|gb|EEC72138.1| hypothetical protein OsI_05156 [Oryza sativa Indica Group]
          Length = 410

 Score =  225 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 126/333 (37%), Positives = 206/333 (61%), Gaps = 7/333 (2%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           + +++K   L  A+SQ+   + + + + L  + S      V+S+GSL LDIALGIGG PK
Sbjct: 78  VKVLEKESTLSVAVSQLASDFDRESNLCL-ERFSRTRRTPVISTGSLKLDIALGIGGLPK 136

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE++G E+SGKTTLALH + ++QK GG CA++DAE+A +   A  +GV+++ LLI+Q
Sbjct: 137 GRMVELFGKEASGKTTLALHVVKEAQKKGGCCAYIDAENAFNPSVAEAIGVNVEKLLIAQ 196

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+ E +L I + LV      ++V  SVAAL PR E+EG++  +   +Q+RLM++ALRK+
Sbjct: 197 PDSAENSLSIVNTLVGGSIDVVVVD-SVAALIPRCELEGEIYMNSEDVQSRLMTRALRKI 255

Query: 187 TSSISRSKCILVFINQMRMKI---GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
             ++SRS+ +++F+NQ+R K+          E   GGNAL FY++VR+   R     ++ 
Sbjct: 256 QHTLSRSETLIIFVNQVRTKLSSNQTPGIFKEVACGGNALGFYAAVRMRTSRRELRYNEA 315

Query: 244 SITGNQTRVKVVKNKMAS-PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
             TG    V+++KNK+A    K+   DI +G+GI +  E+++L     ++ K  + +   
Sbjct: 316 QATGIGISVQIIKNKLAPATLKEAGIDIRFGKGICYESEILELASSLGVIMKDDSGYWIN 375

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
           G+ L   +  ++ FLREN  +A+ I   +R+  
Sbjct: 376 GEFLPN-KAEAEKFLRENAAVADEICGTMRRQF 407


>gi|11244967|gb|AAG33385.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  225 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 160/233 (68%), Positives = 196/233 (84%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS 290
           +IK+ + + GN+TR+KVVK K+A+PFK+    IMYG+G    GELIDLGV   
Sbjct: 181 AIKEGEEVVGNETRIKVVKXKIAAPFKEANTQIMYGQGFXREGELIDLGVNTK 233


>gi|312273244|gb|ADQ56977.1| recombinase A [Vibrio sp. SA0706-05S]
 gi|312273246|gb|ADQ56978.1| recombinase A [Vibrio sp. SA0606-63]
 gi|312273250|gb|ADQ56980.1| recombinase A [Vibrio sp. SA0606-03S]
          Length = 230

 Score =  225 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 160/230 (69%), Positives = 199/230 (86%)

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQP
Sbjct: 1   RIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQP 60

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT
Sbjct: 61  DTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLT 120

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + G
Sbjct: 121 GNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVG 180

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           N+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+K+GA
Sbjct: 181 NETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGA 230


>gi|68349493|gb|AAY96638.1| RecA [Mesorhizobium sp. ICMP 11736]
          Length = 191

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 147/190 (77%), Positives = 174/190 (91%), Gaps = 1/190 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 3   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVF 199
           ISRS  +++F
Sbjct: 182 ISRSNTMVIF 191


>gi|290795153|gb|ADD64591.1| RecA recombinase [Vibrio crassostreae]
          Length = 211

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 151/213 (70%), Positives = 183/213 (85%), Gaps = 2/213 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+I
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAI 211


>gi|11245019|gb|AAG33411.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 160/231 (69%), Positives = 197/231 (85%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IM G+G +  GELIDLGV 
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMXGQGFNREGELIDLGVN 231


>gi|11244991|gb|AAG33397.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 160/231 (69%), Positives = 195/231 (84%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           +IK+ + + GN+TR+KVVKNK+A+PFK     IM G+G    GELIDLGV 
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKXANTQIMXGQGFXREGELIDLGVN 231


>gi|323147061|gb|ADX32812.1| recombinase A [endophytic bacterium 22(2011)]
          Length = 234

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 161/222 (72%), Positives = 196/222 (88%), Gaps = 1/222 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG++M+LG  G + E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 14  TAEKSKALAAALAQIEKQFGKGSVMRLG-AGEVVEDIQVVSTGSLGLDIALGVGGLPRGR 72

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPD
Sbjct: 73  VVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPD 132

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 133 TGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 192

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR
Sbjct: 193 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVR 234


>gi|323147069|gb|ADX32816.1| recombinase A [endophytic bacterium 20(2011)]
          Length = 235

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 161/222 (72%), Positives = 196/222 (88%), Gaps = 1/222 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG++M+LG  G + E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 15  TAEKSKALAAALAQIEKQFGKGSVMRLG-AGEVVEDIQVVSTGSLGLDIALGVGGLPRGR 73

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPD
Sbjct: 74  VVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPD 133

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 134 TGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 193

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR
Sbjct: 194 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVR 235


>gi|323147059|gb|ADX32811.1| recombinase A [endophytic bacterium 21(2011)]
          Length = 232

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 161/222 (72%), Positives = 196/222 (88%), Gaps = 1/222 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG++M+LG  G + E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 12  TAEKSKALAAALAQIEKQFGKGSVMRLG-AGEVVEDIQVVSTGSLGLDIALGVGGLPRGR 70

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPD
Sbjct: 71  VVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPD 130

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 131 TGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 190

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR
Sbjct: 191 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVR 232


>gi|11245069|gb|AAG33436.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 160/233 (68%), Positives = 197/233 (84%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS 290
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IM G+G +  GELIDLGV   
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMXGQGFNREGELIDLGVNTK 233


>gi|312272922|gb|ADQ56816.1| recombinase A [Vibrio sp. HB0308-1A6]
 gi|312272924|gb|ADQ56817.1| recombinase A [Vibrio sp. HB0308-2A5]
 gi|312272926|gb|ADQ56818.1| recombinase A [Vibrio sp. HB0308-1A5]
 gi|312272928|gb|ADQ56819.1| recombinase A [Vibrio cholerae]
 gi|312272930|gb|ADQ56820.1| recombinase A [Vibrio cholerae]
 gi|312272932|gb|ADQ56821.1| recombinase A [Vibrio sp. HB0308-1B5]
 gi|312272934|gb|ADQ56822.1| recombinase A [Vibrio cholerae]
 gi|312272936|gb|ADQ56823.1| recombinase A [Vibrio cholerae]
 gi|312272938|gb|ADQ56824.1| recombinase A [Vibrio cholerae O395]
 gi|312272940|gb|ADQ56825.1| recombinase A [Vibrio cholerae]
 gi|312272942|gb|ADQ56826.1| recombinase A [Vibrio cholerae]
 gi|312272944|gb|ADQ56827.1| recombinase A [Vibrio cholerae]
 gi|312272946|gb|ADQ56828.1| recombinase A [Vibrio cholerae]
 gi|312272948|gb|ADQ56829.1| recombinase A [Vibrio cholerae]
 gi|312272950|gb|ADQ56830.1| recombinase A [Vibrio cholerae]
 gi|312272952|gb|ADQ56831.1| recombinase A [Vibrio cholerae]
 gi|312272954|gb|ADQ56832.1| recombinase A [Vibrio cholerae]
 gi|312272956|gb|ADQ56833.1| recombinase A [Vibrio cholerae]
 gi|312272958|gb|ADQ56834.1| recombinase A [Vibrio cholerae]
 gi|312272960|gb|ADQ56835.1| recombinase A [Vibrio cholerae]
 gi|312272962|gb|ADQ56836.1| recombinase A [Vibrio cholerae]
 gi|312272964|gb|ADQ56837.1| recombinase A [Vibrio cholerae]
 gi|312272966|gb|ADQ56838.1| recombinase A [Vibrio cholerae]
 gi|312272968|gb|ADQ56839.1| recombinase A [Vibrio cholerae]
 gi|312272970|gb|ADQ56840.1| recombinase A [Vibrio cholerae]
 gi|312272972|gb|ADQ56841.1| recombinase A [Vibrio cholerae]
 gi|312272974|gb|ADQ56842.1| recombinase A [Vibrio cholerae]
 gi|312272976|gb|ADQ56843.1| recombinase A [Vibrio cholerae]
 gi|312272978|gb|ADQ56844.1| recombinase A [Vibrio cholerae]
 gi|312272980|gb|ADQ56845.1| recombinase A [Vibrio cholerae]
 gi|312272982|gb|ADQ56846.1| recombinase A [Vibrio cholerae]
 gi|312272984|gb|ADQ56847.1| recombinase A [Vibrio cholerae]
 gi|312272986|gb|ADQ56848.1| recombinase A [Vibrio cholerae]
 gi|312272988|gb|ADQ56849.1| recombinase A [Vibrio cholerae]
 gi|312272990|gb|ADQ56850.1| recombinase A [Vibrio sp. L8M]
 gi|312272992|gb|ADQ56851.1| recombinase A [Vibrio cholerae]
 gi|312272994|gb|ADQ56852.1| recombinase A [Vibrio cholerae]
 gi|312272996|gb|ADQ56853.1| recombinase A [Vibrio cholerae]
 gi|312272998|gb|ADQ56854.1| recombinase A [Vibrio cholerae]
 gi|312273000|gb|ADQ56855.1| recombinase A [Vibrio cholerae]
 gi|312273002|gb|ADQ56856.1| recombinase A [Vibrio cholerae]
 gi|312273004|gb|ADQ56857.1| recombinase A [Vibrio cholerae]
 gi|312273006|gb|ADQ56858.1| recombinase A [Vibrio cholerae]
 gi|312273008|gb|ADQ56859.1| recombinase A [Vibrio cholerae]
 gi|312273010|gb|ADQ56860.1| recombinase A [Vibrio cholerae]
 gi|312273012|gb|ADQ56861.1| recombinase A [Vibrio cholerae]
 gi|312273014|gb|ADQ56862.1| recombinase A [Vibrio cholerae]
 gi|312273018|gb|ADQ56864.1| recombinase A [Vibrio cholerae]
 gi|312273020|gb|ADQ56865.1| recombinase A [Vibrio cholerae]
 gi|312273022|gb|ADQ56866.1| recombinase A [Vibrio cholerae]
 gi|312273024|gb|ADQ56867.1| recombinase A [Vibrio cholerae]
 gi|312273026|gb|ADQ56868.1| recombinase A [Vibrio cholerae]
 gi|312273028|gb|ADQ56869.1| recombinase A [Vibrio cholerae]
 gi|312273030|gb|ADQ56870.1| recombinase A [Vibrio cholerae]
 gi|312273032|gb|ADQ56871.1| recombinase A [Vibrio cholerae]
 gi|312273034|gb|ADQ56872.1| recombinase A [Vibrio cholerae]
 gi|312273036|gb|ADQ56873.1| recombinase A [Vibrio cholerae]
 gi|312273040|gb|ADQ56875.1| recombinase A [Vibrio cholerae]
 gi|312273042|gb|ADQ56876.1| recombinase A [Vibrio cholerae]
 gi|312273044|gb|ADQ56877.1| recombinase A [Vibrio cholerae]
 gi|312273046|gb|ADQ56878.1| recombinase A [Vibrio cholerae]
 gi|312273048|gb|ADQ56879.1| recombinase A [Vibrio cholerae]
 gi|312273050|gb|ADQ56880.1| recombinase A [Vibrio cholerae]
 gi|312273052|gb|ADQ56881.1| recombinase A [Vibrio cholerae]
 gi|312273054|gb|ADQ56882.1| recombinase A [Vibrio cholerae]
 gi|312273056|gb|ADQ56883.1| recombinase A [Vibrio cholerae]
 gi|312273058|gb|ADQ56884.1| recombinase A [Vibrio cholerae]
 gi|312273060|gb|ADQ56885.1| recombinase A [Vibrio cholerae]
 gi|312273062|gb|ADQ56886.1| recombinase A [Vibrio cholerae]
 gi|312273064|gb|ADQ56887.1| recombinase A [Vibrio cholerae]
 gi|312273066|gb|ADQ56888.1| recombinase A [Vibrio cholerae]
 gi|312273068|gb|ADQ56889.1| recombinase A [Vibrio cholerae]
 gi|312273070|gb|ADQ56890.1| recombinase A [Vibrio cholerae]
 gi|312273072|gb|ADQ56891.1| recombinase A [Vibrio cholerae]
 gi|312273074|gb|ADQ56892.1| recombinase A [Vibrio cholerae]
 gi|312273076|gb|ADQ56893.1| recombinase A [Vibrio cholerae]
 gi|312273078|gb|ADQ56894.1| recombinase A [Vibrio cholerae]
 gi|312273080|gb|ADQ56895.1| recombinase A [Vibrio cholerae]
 gi|312273082|gb|ADQ56896.1| recombinase A [Vibrio cholerae]
 gi|312273088|gb|ADQ56899.1| recombinase A [Vibrio cholerae]
 gi|312273092|gb|ADQ56901.1| recombinase A [Vibrio cholerae]
 gi|312273094|gb|ADQ56902.1| recombinase A [Vibrio cholerae]
 gi|312273096|gb|ADQ56903.1| recombinase A [Vibrio cholerae]
 gi|312273098|gb|ADQ56904.1| recombinase A [Vibrio cholerae]
 gi|312273100|gb|ADQ56905.1| recombinase A [Vibrio cholerae]
 gi|312273102|gb|ADQ56906.1| recombinase A [Vibrio cholerae]
 gi|312273104|gb|ADQ56907.1| recombinase A [Vibrio cholerae]
 gi|312273106|gb|ADQ56908.1| recombinase A [Vibrio cholerae]
 gi|312273108|gb|ADQ56909.1| recombinase A [Vibrio cholerae]
 gi|312273110|gb|ADQ56910.1| recombinase A [Vibrio cholerae]
 gi|312273112|gb|ADQ56911.1| recombinase A [Vibrio cholerae]
 gi|312273114|gb|ADQ56912.1| recombinase A [Vibrio cholerae]
 gi|312273116|gb|ADQ56913.1| recombinase A [Vibrio cholerae]
 gi|312273118|gb|ADQ56914.1| recombinase A [Vibrio cholerae]
 gi|312273120|gb|ADQ56915.1| recombinase A [Vibrio cholerae]
 gi|312273122|gb|ADQ56916.1| recombinase A [Vibrio cholerae]
 gi|312273124|gb|ADQ56917.1| recombinase A [Vibrio cholerae]
 gi|312273126|gb|ADQ56918.1| recombinase A [Vibrio cholerae]
 gi|312273128|gb|ADQ56919.1| recombinase A [Vibrio cholerae]
 gi|312273130|gb|ADQ56920.1| recombinase A [Vibrio cholerae]
 gi|312273132|gb|ADQ56921.1| recombinase A [Vibrio cholerae]
 gi|312273134|gb|ADQ56922.1| recombinase A [Vibrio cholerae]
 gi|312273136|gb|ADQ56923.1| recombinase A [Vibrio cholerae]
 gi|312273138|gb|ADQ56924.1| recombinase A [Vibrio cholerae]
 gi|312273140|gb|ADQ56925.1| recombinase A [Vibrio cholerae]
 gi|312273142|gb|ADQ56926.1| recombinase A [Vibrio cholerae]
 gi|312273144|gb|ADQ56927.1| recombinase A [Vibrio cholerae]
 gi|312273146|gb|ADQ56928.1| recombinase A [Vibrio cholerae]
 gi|312273148|gb|ADQ56929.1| recombinase A [Vibrio cholerae]
 gi|312273150|gb|ADQ56930.1| recombinase A [Vibrio cholerae]
 gi|312273152|gb|ADQ56931.1| recombinase A [Vibrio cholerae]
 gi|312273154|gb|ADQ56932.1| recombinase A [Vibrio cholerae]
 gi|312273158|gb|ADQ56934.1| recombinase A [Vibrio cholerae]
 gi|312273160|gb|ADQ56935.1| recombinase A [Vibrio cholerae]
 gi|312273164|gb|ADQ56937.1| recombinase A [Vibrio cholerae]
 gi|312273166|gb|ADQ56938.1| recombinase A [Vibrio cholerae]
 gi|312273168|gb|ADQ56939.1| recombinase A [Vibrio cholerae]
 gi|312273170|gb|ADQ56940.1| recombinase A [Vibrio cholerae]
 gi|312273172|gb|ADQ56941.1| recombinase A [Vibrio cholerae]
 gi|312273174|gb|ADQ56942.1| recombinase A [Vibrio cholerae]
 gi|312273176|gb|ADQ56943.1| recombinase A [Vibrio cholerae]
 gi|312273178|gb|ADQ56944.1| recombinase A [Vibrio cholerae]
 gi|312273180|gb|ADQ56945.1| recombinase A [Vibrio cholerae]
 gi|312273182|gb|ADQ56946.1| recombinase A [Vibrio cholerae]
 gi|312273184|gb|ADQ56947.1| recombinase A [Vibrio cholerae]
 gi|312273186|gb|ADQ56948.1| recombinase A [Vibrio cholerae]
 gi|312273188|gb|ADQ56949.1| recombinase A [Vibrio cholerae]
 gi|312273190|gb|ADQ56950.1| recombinase A [Vibrio cholerae]
 gi|312273192|gb|ADQ56951.1| recombinase A [Vibrio cholerae]
 gi|312273194|gb|ADQ56952.1| recombinase A [Vibrio cholerae]
 gi|312273196|gb|ADQ56953.1| recombinase A [Vibrio cholerae]
 gi|312273198|gb|ADQ56954.1| recombinase A [Vibrio cholerae]
 gi|312273200|gb|ADQ56955.1| recombinase A [Vibrio cholerae]
 gi|312273202|gb|ADQ56956.1| recombinase A [Vibrio cholerae]
 gi|312273204|gb|ADQ56957.1| recombinase A [Vibrio cholerae]
 gi|312273206|gb|ADQ56958.1| recombinase A [Vibrio cholerae]
 gi|312273208|gb|ADQ56959.1| recombinase A [Vibrio cholerae]
 gi|312273210|gb|ADQ56960.1| recombinase A [Vibrio cholerae]
 gi|312273212|gb|ADQ56961.1| recombinase A [Vibrio cholerae]
 gi|312273214|gb|ADQ56962.1| recombinase A [Vibrio cholerae]
 gi|312273216|gb|ADQ56963.1| recombinase A [Vibrio cholerae]
 gi|312273218|gb|ADQ56964.1| recombinase A [Vibrio cholerae]
 gi|312273220|gb|ADQ56965.1| recombinase A [Vibrio cholerae]
 gi|312273222|gb|ADQ56966.1| recombinase A [Vibrio cholerae]
 gi|312273224|gb|ADQ56967.1| recombinase A [Vibrio cholerae]
 gi|312273226|gb|ADQ56968.1| recombinase A [Vibrio cholerae]
 gi|312273228|gb|ADQ56969.1| recombinase A [Vibrio cholerae]
 gi|312273230|gb|ADQ56970.1| recombinase A [Vibrio cholerae]
 gi|312273232|gb|ADQ56971.1| recombinase A [Vibrio cholerae]
 gi|312273234|gb|ADQ56972.1| recombinase A [Vibrio cholerae]
 gi|312273236|gb|ADQ56973.1| recombinase A [Vibrio cholerae]
 gi|312273238|gb|ADQ56974.1| recombinase A [Vibrio cholerae]
 gi|312273240|gb|ADQ56975.1| recombinase A [Vibrio cholerae]
 gi|312273242|gb|ADQ56976.1| recombinase A [Vibrio cholerae]
          Length = 230

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 160/230 (69%), Positives = 199/230 (86%)

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQP
Sbjct: 1   RIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQP 60

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT
Sbjct: 61  DTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLT 120

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G
Sbjct: 121 GNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVG 180

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           N+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGA
Sbjct: 181 NETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGA 230


>gi|11245025|gb|AAG33414.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 159/231 (68%), Positives = 196/231 (84%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           AL  GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALXAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           +IK+ + + GN+TR+KVVK K+A+PFK+    IMYG+G +  GELIDLGV 
Sbjct: 181 AIKEGEEVVGNETRIKVVKTKIAAPFKEANTQIMYGQGFNREGELIDLGVN 231


>gi|312273016|gb|ADQ56863.1| recombinase A [Vibrio cholerae]
 gi|312273038|gb|ADQ56874.1| recombinase A [Vibrio cholerae]
 gi|312273156|gb|ADQ56933.1| recombinase A [Vibrio cholerae]
 gi|312273162|gb|ADQ56936.1| recombinase A [Vibrio cholerae]
          Length = 230

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 161/230 (70%), Positives = 199/230 (86%)

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGV++  LL+SQP
Sbjct: 1   RIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPIYAKKLGVNIDELLVSQP 60

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT
Sbjct: 61  DTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLT 120

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G
Sbjct: 121 GNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVG 180

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           N+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  +V+KSGA
Sbjct: 181 NETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGA 230


>gi|321309546|ref|YP_004191875.1| recombinase A [Mycoplasma haemofelis str. Langford 1]
 gi|319801390|emb|CBY92036.1| recombinase A [Mycoplasma haemofelis str. Langford 1]
          Length = 322

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 119/309 (38%), Positives = 192/309 (62%), Gaps = 13/309 (4%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
            + + KGA             IEV+S+GS  L+ ALG GG+PKG+I+EI+G +SSGK+TL
Sbjct: 23  NKNFAKGA------------NIEVISTGSYVLNRALGAGGWPKGKIIEIFGTDSSGKSTL 70

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALH++ ++QK G    ++D E+ L+  +A+K+GVD   LL++ P++GE+A+E+   L+ +
Sbjct: 71  ALHSVLEAQKAGQRVVYIDLENTLNPEWAKKIGVDASKLLVAYPNSGEEAMELIFKLIET 130

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             VD+I++DSVAAL P AE E +  +   G+ ARLMS+ LR + S +  S   ++FINQ+
Sbjct: 131 KNVDLIIVDSVAALVPSAEFESNFQDQTMGLHARLMSKGLRIIQSKLIGSHTTIIFINQI 190

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-ITGNQTRVKVVKNKMASP 262
           R KIG  +    TTTGG ALK+ +SVR++I+R  +IKD  +   G  T+  VVKNK  +P
Sbjct: 191 REKIGNSYIPSITTTGGRALKYAASVRVEIKRCEAIKDSSNTTIGFATKGIVVKNKYGAP 250

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322
                  + +  G   + E+I   +   ++ + G+WF ++G+ + QG  + +  +REN E
Sbjct: 251 MAVANMALYFDSGFDVYHEVIQECLSKQVIVRKGSWFEYEGKNISQGLPHLRKLMRENKE 310

Query: 323 IAENIESLL 331
           + E ++  +
Sbjct: 311 LFEGVKKKV 319


>gi|156902076|gb|ABU96831.1| RecA protein [Vibrio cholerae]
          Length = 229

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 159/228 (69%), Positives = 196/228 (85%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  
Sbjct: 2   GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 61

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 62  LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 121

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 122 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 181

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
            + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK 
Sbjct: 182 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKH 229


>gi|6694821|gb|AAF25406.1|AF214759_1 RecA protein [Arthrobacter sp. 'SMCC G950']
          Length = 228

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 152/228 (66%), Positives = 188/228 (82%)

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD   LL+SQPDT
Sbjct: 1   VEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHALDPEYAAKLGVDTDALLVSQPDT 60

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI DMLV SG++DI+VIDSVAAL PRAEIEGDMG+S  G+QARLMSQALRK+T  
Sbjct: 61  GEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKITGR 120

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ ++K+     GN+
Sbjct: 121 LSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQTLKEGADSVGNR 180

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           T+ K+VKNKMA PFK  EFDI+YG+GIS  G +ID+GV+  ++ KSG+
Sbjct: 181 TKAKIVKNKMAPPFKIAEFDIIYGQGISREGGIIDMGVEHGLIKKSGS 228


>gi|226495001|ref|NP_001143776.1| hypothetical protein LOC100276540 [Zea mays]
 gi|194699132|gb|ACF83650.1| unknown [Zea mays]
 gi|195626822|gb|ACG35241.1| hypothetical protein [Zea mays]
          Length = 409

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 128/334 (38%), Positives = 201/334 (60%), Gaps = 7/334 (2%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           +   ++K  +L  A+SQ+   + + + + L  + S      VVS+GSL LD+ALG+GG P
Sbjct: 76  DTKAIEKESSLNVAVSQLAIDFDRDSNLCL-ERFSRARKASVVSTGSLKLDLALGVGGLP 134

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR+VEIYG E+SGKTTLALH I ++QK GG CA++DAE+A +  +A  +GVD + LLI+
Sbjct: 135 KGRMVEIYGKEASGKTTLALHVIKEAQKNGGYCAYIDAENAFNPSFAESIGVDSERLLIA 194

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPD+ E +L I + LV      ++V  SVAAL P+ EIEG++  +   +Q+ LM++ALRK
Sbjct: 195 QPDSAENSLSIVNTLVGGSVAVVVVD-SVAALIPKCEIEGEIYTNCGDIQSHLMTRALRK 253

Query: 186 LTSSISRSKCILVFINQMRMK--IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           +  ++ RS+ +++F+NQ+R K          E   GGNAL FY++VR+   R      +D
Sbjct: 254 IQYTLCRSETLIIFVNQVRTKRTSSNPGIYKEVPCGGNALGFYAAVRMRTSRRELRYSED 313

Query: 244 SITGNQTRVKVVKNKMASP--FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
             TG    V+++KNK+A     K+   DI +G+GI    E+++      ++ K G  +  
Sbjct: 314 EATGVGISVQIIKNKLAPANLKKEAGIDITFGKGICHESEILETASSVGVILKDGCGYWI 373

Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
             + L  G+  ++ FLREN  +A+ I + +R   
Sbjct: 374 NNEFLA-GKVEAEKFLRENAAVADEICNTVRNEF 406


>gi|148361401|gb|ABQ59282.1| DNA recombinase [Listeria monocytogenes]
          Length = 210

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 140/212 (66%), Positives = 174/212 (82%), Gaps = 2/212 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
             AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+
Sbjct: 1   QAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEV 58

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQ
Sbjct: 59  YGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQ 118

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++
Sbjct: 119 ALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINK 178

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           SK I +FINQ+R K+GVMFG+PE T GG ALK
Sbjct: 179 SKTIAIFINQIREKVGVMFGNPEITPGGRALK 210


>gi|290795151|gb|ADD64590.1| RecA recombinase [Vibrio crassostreae]
          Length = 211

 Score =  223 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 150/213 (70%), Positives = 183/213 (85%), Gaps = 2/213 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV++YGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVKVYGPESSGKTTLTLE 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 59  LIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 119 DVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMK 178

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G+I
Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAI 211


>gi|11245161|gb|AAG33482.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  223 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 159/231 (68%), Positives = 195/231 (84%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI  PESSG TTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPXGRIVEIXXPESSGXTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGV 
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVN 231


>gi|6694804|gb|AAF25389.1|AF214742_1 RecA protein [Arthrobacter sp. 'SMCC G980']
          Length = 222

 Score =  223 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 152/222 (68%), Positives = 186/222 (83%)

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
           +ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLG
Sbjct: 1   VALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHALDPEYAAKLG 60

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           VD   LL+SQPDTGEQALEI DML+ SG++D+IVIDSVAAL PRAEIEGDMG+S  G+QA
Sbjct: 61  VDTDALLVSQPDTGEQALEIMDMLIGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQA 120

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           RLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+
Sbjct: 121 RLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRI 180

Query: 237 GSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISF 278
            ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS 
Sbjct: 181 QTLKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQGISR 222


>gi|222619856|gb|EEE55988.1| hypothetical protein OsJ_04733 [Oryza sativa Japonica Group]
          Length = 392

 Score =  223 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 126/333 (37%), Positives = 206/333 (61%), Gaps = 7/333 (2%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           + +++K   L  A+SQ+   + + + + L  + S      V+S+GSL LDIALGIGG PK
Sbjct: 60  VKVLEKESTLSVAVSQLASDFDRESNLCL-ERFSRTRRTPVISTGSLKLDIALGIGGLPK 118

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VE++G E+SGKTTLALH + ++QK GG CA++DAE+A +   A  +GV+++ LLI+Q
Sbjct: 119 GRMVELFGKEASGKTTLALHVVKEAQKKGGCCAYIDAENAFNPSVAEAIGVNVEKLLIAQ 178

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+ E +L I + LV      ++V  SVAAL PR E+EG++  +   +Q+RLM++ALRK+
Sbjct: 179 PDSAENSLSIVNTLVGGSIDVVVVD-SVAALIPRCELEGEIYMNSEDVQSRLMTRALRKI 237

Query: 187 TSSISRSKCILVFINQMRMKI---GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
             ++SRS+ +++F+NQ+R K+          E   GGNAL FY++VR+   R     ++ 
Sbjct: 238 QHTLSRSETLIIFVNQVRTKLSSNQTPGIFKEVACGGNALGFYAAVRMRTSRRELRYNEA 297

Query: 244 SITGNQTRVKVVKNKMAS-PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
             TG    V+++KNK+A    K+   DI +G+GI +  E+++L     ++ K  + +   
Sbjct: 298 QATGIGISVQIIKNKLAPATLKEAGIDIRFGKGICYESEILELASSLGVIMKDDSGYWIN 357

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
           G+ L   +  ++ FLREN  +A+ I   +R+  
Sbjct: 358 GEFLPN-KAEAEKFLRENAAVADEICGTMRRQF 389


>gi|308171326|gb|ADO15982.1| RecA [Vibrio sinaloensis DSM 21326]
          Length = 228

 Score =  223 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 161/228 (70%), Positives = 197/228 (86%)

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTL L  IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQP
Sbjct: 1   RIVEIYGPESSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQP 60

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT
Sbjct: 61  DTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLT 120

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + G
Sbjct: 121 GNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVG 180

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           N+TR+KVVKNK+A+PFKQ E  I+YG G +  GELIDLGVK  +V+K+
Sbjct: 181 NETRIKVVKNKIAAPFKQAETQILYGAGFNREGELIDLGVKHKLVEKA 228


>gi|6694846|gb|AAF25431.1|AF214784_1 RecA protein [Arthrobacter nicotinovorans]
          Length = 222

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 154/222 (69%), Positives = 186/222 (83%)

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
           +ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLG
Sbjct: 1   VALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPDYAAKLG 60

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           VD   LL+SQPDTGEQALEI DMLV SG++DIIVIDSVAAL PRAEIEG+MG+S  G+QA
Sbjct: 61  VDTDALLVSQPDTGEQALEIMDMLVGSGSLDIIVIDSVAALVPRAEIEGEMGDSHVGLQA 120

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           RLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+
Sbjct: 121 RLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRI 180

Query: 237 GSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISF 278
            ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS 
Sbjct: 181 QTLKEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQGISR 222


>gi|29652124|gb|AAO87723.1| RecA [Listeria monocytogenes]
          Length = 208

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 139/209 (66%), Positives = 173/209 (82%), Gaps = 2/209 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YG
Sbjct: 2   ALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQAL
Sbjct: 60  PESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK
Sbjct: 120 EIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSK 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNAL 223
            I +FINQ+R K+GVMFG+PE T GG AL
Sbjct: 180 TIAIFINQIREKVGVMFGNPEITPGGRAL 208


>gi|255027584|ref|ZP_05299570.1| recombinase A [Listeria monocytogenes FSL J2-003]
          Length = 228

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 124/222 (55%), Positives = 171/222 (77%), Gaps = 2/222 (0%)

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I
Sbjct: 1   EQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVI 60

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           ++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR   +K    + GN+T
Sbjct: 61  NKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT 120

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           ++KVVKNK+A PF+  E DIMYGEGIS  GEL+D+  +  +++KSG+W+S+K +R+GQGR
Sbjct: 121 KIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGR 180

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           EN+K +L+E+ +I + I   +R+   +  D   +EP    ++
Sbjct: 181 ENAKQYLKEHTDIRDEISKRVREEYEI--DGSSKEPLDEKEE 220


>gi|258562171|gb|ACV81806.1| recombinase A [Burkholderia cenocepacia]
          Length = 223

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 162/223 (72%), Positives = 195/223 (87%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 1   LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 61  SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 120

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKI VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 121 IRMKINVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 180

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G++
Sbjct: 181 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEK 223


>gi|209413811|emb|CAP78951.1| recombinase A [Leuconostoc holzapfelii]
          Length = 239

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 155/241 (64%), Positives = 190/241 (78%), Gaps = 2/241 (0%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           +   KG+IM LG        ++   SGS+ LD+ALG+GG+PKGRI+EIYGPESSGKTTLA
Sbjct: 1   KTIWKGSIMVLGDNA--LTQVDTYPSGSVKLDVALGVGGYPKGRIIEIYGPESSGKTTLA 58

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH +A+ QK GGT A++DAE+ALD  YA  LGV    LL+SQPDTGEQ LEI D LV+SG
Sbjct: 59  LHAVAEVQKAGGTAAYIDAENALDVKYAEALGVQKDELLLSQPDTGEQGLEIADALVQSG 118

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           AVDIIV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL  +++R+  I +FINQ+R
Sbjct: 119 AVDIIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGTLNRTGTIAIFINQIR 178

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
            KIGVMFG+PETT GG ALKFYS++ L++RR   IKD   ++GN T+VKVVKNK+A PFK
Sbjct: 179 EKIGVMFGNPETTPGGRALKFYSTIHLEVRRSTQIKDGTDVSGNLTKVKVVKNKVAPPFK 238

Query: 265 Q 265
           Q
Sbjct: 239 Q 239


>gi|115395220|gb|ABH11227.1| RecA [Listeria monocytogenes]
 gi|115395222|gb|ABH11228.1| RecA [Listeria monocytogenes]
 gi|115395224|gb|ABH11229.1| RecA [Listeria monocytogenes]
 gi|115395226|gb|ABH11230.1| RecA [Listeria monocytogenes]
 gi|115395228|gb|ABH11231.1| RecA [Listeria monocytogenes]
 gi|115395230|gb|ABH11232.1| RecA [Listeria monocytogenes]
 gi|115395232|gb|ABH11233.1| RecA [Listeria monocytogenes]
 gi|115395234|gb|ABH11234.1| RecA [Listeria monocytogenes]
 gi|115395236|gb|ABH11235.1| RecA [Listeria monocytogenes]
 gi|115395238|gb|ABH11236.1| RecA [Listeria monocytogenes]
 gi|115395240|gb|ABH11237.1| RecA [Listeria monocytogenes]
 gi|115395242|gb|ABH11238.1| RecA [Listeria monocytogenes]
 gi|115395244|gb|ABH11239.1| RecA [Listeria monocytogenes]
 gi|115395246|gb|ABH11240.1| RecA [Listeria monocytogenes]
 gi|115395248|gb|ABH11241.1| RecA [Listeria monocytogenes]
 gi|115395250|gb|ABH11242.1| RecA [Listeria monocytogenes]
 gi|115395252|gb|ABH11243.1| RecA [Listeria monocytogenes]
 gi|115395254|gb|ABH11244.1| RecA [Listeria monocytogenes]
 gi|115395256|gb|ABH11245.1| RecA [Listeria monocytogenes]
 gi|115395258|gb|ABH11246.1| RecA [Listeria monocytogenes]
 gi|115395260|gb|ABH11247.1| RecA [Listeria monocytogenes]
 gi|115395262|gb|ABH11248.1| RecA [Listeria monocytogenes]
 gi|115395264|gb|ABH11249.1| RecA [Listeria monocytogenes]
 gi|115395266|gb|ABH11250.1| RecA [Listeria monocytogenes]
 gi|115395268|gb|ABH11251.1| RecA [Listeria monocytogenes]
 gi|115395270|gb|ABH11252.1| RecA [Listeria monocytogenes]
 gi|115395272|gb|ABH11253.1| RecA [Listeria monocytogenes]
 gi|115395274|gb|ABH11254.1| RecA [Listeria monocytogenes]
 gi|115395276|gb|ABH11255.1| RecA [Listeria monocytogenes]
 gi|115395278|gb|ABH11256.1| RecA [Listeria monocytogenes]
 gi|115395280|gb|ABH11257.1| RecA [Listeria monocytogenes]
 gi|115395282|gb|ABH11258.1| RecA [Listeria monocytogenes]
 gi|115395284|gb|ABH11259.1| RecA [Listeria monocytogenes]
 gi|115395288|gb|ABH11261.1| RecA [Listeria monocytogenes]
 gi|115395290|gb|ABH11262.1| RecA [Listeria monocytogenes]
 gi|115395292|gb|ABH11263.1| RecA [Listeria monocytogenes]
 gi|115395294|gb|ABH11264.1| RecA [Listeria monocytogenes]
 gi|115395296|gb|ABH11265.1| RecA [Listeria monocytogenes]
 gi|115395298|gb|ABH11266.1| RecA [Listeria monocytogenes]
 gi|115395300|gb|ABH11267.1| RecA [Listeria monocytogenes]
 gi|115395302|gb|ABH11268.1| RecA [Listeria monocytogenes]
 gi|115395304|gb|ABH11269.1| RecA [Listeria monocytogenes]
 gi|115395306|gb|ABH11270.1| RecA [Listeria monocytogenes]
 gi|115395308|gb|ABH11271.1| RecA [Listeria monocytogenes]
 gi|115395310|gb|ABH11272.1| RecA [Listeria monocytogenes]
 gi|115395312|gb|ABH11273.1| RecA [Listeria monocytogenes]
 gi|115395314|gb|ABH11274.1| RecA [Listeria monocytogenes]
 gi|115395316|gb|ABH11275.1| RecA [Listeria monocytogenes]
 gi|115395318|gb|ABH11276.1| RecA [Listeria monocytogenes]
 gi|115395320|gb|ABH11277.1| RecA [Listeria monocytogenes]
 gi|115395322|gb|ABH11278.1| RecA [Listeria monocytogenes]
 gi|115395324|gb|ABH11279.1| RecA [Listeria monocytogenes]
 gi|115395326|gb|ABH11280.1| RecA [Listeria monocytogenes]
 gi|115395328|gb|ABH11281.1| RecA [Listeria monocytogenes]
 gi|115395330|gb|ABH11282.1| RecA [Listeria monocytogenes]
 gi|115395332|gb|ABH11283.1| RecA [Listeria monocytogenes]
 gi|115395334|gb|ABH11284.1| RecA [Listeria monocytogenes]
 gi|115395336|gb|ABH11285.1| RecA [Listeria monocytogenes]
 gi|115395338|gb|ABH11286.1| RecA [Listeria monocytogenes]
 gi|115395340|gb|ABH11287.1| RecA [Listeria monocytogenes]
 gi|115395342|gb|ABH11288.1| RecA [Listeria monocytogenes]
          Length = 207

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 139/209 (66%), Positives = 173/209 (82%), Gaps = 2/209 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YG
Sbjct: 1   ALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYG 58

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQAL
Sbjct: 59  PESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQAL 118

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK
Sbjct: 119 EIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSK 178

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNAL 223
            I +FINQ+R K+GVMFG+PE T GG AL
Sbjct: 179 TIAIFINQIREKVGVMFGNPEITPGGRAL 207


>gi|258562169|gb|ACV81805.1| recombinase A [Burkholderia multivorans]
 gi|258562179|gb|ACV81810.1| recombinase A [Burkholderia dolosa]
 gi|258562195|gb|ACV81818.1| recombinase A [Burkholderia multivorans]
 gi|258562197|gb|ACV81819.1| recombinase A [Burkholderia multivorans]
          Length = 223

 Score =  222 bits (565), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 163/223 (73%), Positives = 197/223 (88%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVR
Sbjct: 1   LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 61  SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 120

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 121 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 180

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G++
Sbjct: 181 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEK 223


>gi|258562185|gb|ACV81813.1| recombinase A [Burkholderia anthina]
 gi|258562189|gb|ACV81815.1| recombinase A [Burkholderia cepacia ATCC 25416]
          Length = 223

 Score =  222 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 162/223 (72%), Positives = 196/223 (87%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 1   LTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 61  SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 120

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 121 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 180

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G++
Sbjct: 181 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEK 223


>gi|258562159|gb|ACV81800.1| recombinase A [Burkholderia cenocepacia]
 gi|258562167|gb|ACV81804.1| recombinase A [Burkholderia cenocepacia]
 gi|258562187|gb|ACV81814.1| recombinase A [Burkholderia cenocepacia]
 gi|258562193|gb|ACV81817.1| recombinase A [Burkholderia vietnamiensis]
 gi|258562199|gb|ACV81820.1| recombinase A [Burkholderia vietnamiensis]
 gi|258562201|gb|ACV81821.1| recombinase A [Burkholderia vietnamiensis]
          Length = 223

 Score =  222 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 163/223 (73%), Positives = 196/223 (87%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 1   LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 61  SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 120

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 121 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 180

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G++
Sbjct: 181 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEK 223


>gi|47109404|emb|CAG28698.1| recA [Propionibacterium acidipropionici]
          Length = 216

 Score =  222 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 147/218 (67%), Positives = 180/218 (82%), Gaps = 2/218 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           +M+LG + ++   I  + +GS+ LD+ALG+GG P+GRIVEIYGPES GKTTLALH IA +
Sbjct: 1   VMRLGDRETV--KIPAIPTGSVALDVALGVGGLPRGRIVEIYGPESGGKTTLALHAIANA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           Q  GG CAF+DAEHALD  YA+ LGVD  NLLISQPD GEQALEI D LVRSGA+++IVI
Sbjct: 59  QAEGGICAFIDAEHALDPEYAKNLGVDTDNLLISQPDNGEQALEIADTLVRSGALELIVI 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAALTP+AEIEGDMG+S  G+QARLMSQALRK+T ++S +    +FINQ+R KIGVMF
Sbjct: 119 DSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKMTGALSGAGTTAIFINQLREKIGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           G+PETTTGG ALKFYSSVRLD+RR+ ++KD D + GN+
Sbjct: 179 GNPETTTGGRALKFYSSVRLDVRRIQTLKDGDEMVGNR 216


>gi|325974150|emb|CBM42973.1| recombinase A [Rhizobium sp. STM 6135]
 gi|325974152|emb|CBM42974.1| recombinase A [Rhizobium sp. STM 6155]
          Length = 191

 Score =  222 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 154/191 (80%), Positives = 177/191 (92%), Gaps = 1/191 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSLGLDIALGIGG PKGRI
Sbjct: 2   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLGLDIALGIGGLPKGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 61  IEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 121 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDNLPGLQARLMSQALRKLTAS 180

Query: 190 ISRSKCILVFI 200
           IS+S  +++FI
Sbjct: 181 ISKSNTMVIFI 191


>gi|115395286|gb|ABH11260.1| RecA [Listeria monocytogenes]
          Length = 206

 Score =  222 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 138/208 (66%), Positives = 172/208 (82%), Gaps = 2/208 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YG
Sbjct: 1   ALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYG 58

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQAL
Sbjct: 59  PESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQAL 118

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK
Sbjct: 119 EIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSK 178

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNA 222
            I +FINQ+R K+GVMFG+PE T GG A
Sbjct: 179 TIAIFINQIREKVGVMFGNPEITPGGRA 206


>gi|323147073|gb|ADX32818.1| recombinase A [endophytic bacterium 26(2011)]
          Length = 232

 Score =  222 bits (564), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 160/221 (72%), Positives = 195/221 (88%), Gaps = 1/221 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG++M+LG  G + E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 13  TAEKSKALAAALAQIEKQFGKGSVMRLG-AGEVVEDIQVVSTGSLGLDIALGVGGLPRGR 71

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPD
Sbjct: 72  VVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPD 131

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 132 TGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 191

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SV
Sbjct: 192 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASV 232


>gi|68349491|gb|AAY96637.1| RecA [Mesorhizobium sp. ICMP 15054]
          Length = 190

 Score =  222 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 146/189 (77%), Positives = 173/189 (91%), Gaps = 1/189 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 3   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILV 198
           ISRS  +++
Sbjct: 182 ISRSNTMVI 190


>gi|311692217|dbj|BAJ25723.1| recombinase A [Rhizobium sp. T141]
          Length = 188

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 149/189 (78%), Positives = 175/189 (92%), Gaps = 1/189 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKCILVFI 200
           +S  +++FI
Sbjct: 180 KSNTMVIFI 188


>gi|198385755|gb|ACH86221.1| RecA [Rhizobium sp. OR191]
          Length = 192

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 156/191 (81%), Positives = 178/191 (93%), Gaps = 1/191 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  S+ E IE VS+GSLGLDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNESVVE-IETVSTGSLGLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFI 200
           IS+SK +++FI
Sbjct: 182 ISKSKTMVIFI 192


>gi|29652260|gb|AAO87791.1| RecA [Listeria monocytogenes]
          Length = 204

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 136/205 (66%), Positives = 170/205 (82%), Gaps = 2/205 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YG
Sbjct: 2   ALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQAL
Sbjct: 60  PESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK
Sbjct: 120 EIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSK 179

Query: 195 CILVFINQMRMKIGVMFGSPETTTG 219
            I +FINQ+R K+GVMFG+PE T G
Sbjct: 180 TIAIFINQIREKVGVMFGNPEITPG 204


>gi|156902070|gb|ABU96828.1| RecA protein [Vibrio cholerae]
          Length = 228

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 158/228 (69%), Positives = 195/228 (85%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  L
Sbjct: 1   GLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDEL 60

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           L+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA
Sbjct: 61  LVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQA 120

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           +RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ 
Sbjct: 121 MRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEG 180

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS 290
           + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  
Sbjct: 181 EEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHK 228


>gi|162955836|gb|ABY25293.1| recombinant DNA repair protein [Vibrio sp. MSSRF7]
          Length = 214

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 151/212 (71%), Positives = 185/212 (87%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DA
Sbjct: 3   DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAAAQREGKTCAFIDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YA+KLGVD+ +LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEI
Sbjct: 63  EHALDPVYAKKLGVDIDSLLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 123 EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNAL 182

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           KFY+SVRLDIRR GSIK+ D + GN+TR+KVV
Sbjct: 183 KFYASVRLDIRRTGSIKEGDEVVGNETRIKVV 214


>gi|157493191|gb|ABV57961.1| RecA [Vibrio mimicus]
          Length = 227

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 158/227 (69%), Positives = 195/227 (85%)

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           G GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++
Sbjct: 1   GAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNI 60

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
             LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++
Sbjct: 61  DELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARML 120

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+I
Sbjct: 121 SQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAI 180

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
           K+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLG
Sbjct: 181 KEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLG 227


>gi|323710218|gb|ADY03043.1| RecA [Escherichia coli]
          Length = 224

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 156/224 (69%), Positives = 198/224 (88%)

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTGEQALEI 
Sbjct: 1   SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEIC 60

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L
Sbjct: 61  DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLL 120

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++TRVKVVKN
Sbjct: 121 IFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKN 180

Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301
           K+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+
Sbjct: 181 KIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSY 224


>gi|77412952|ref|ZP_00789155.1| recA protein [Streptococcus agalactiae 515]
 gi|77160964|gb|EAO72072.1| recA protein [Streptococcus agalactiae 515]
          Length = 251

 Score =  221 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 128/238 (53%), Positives = 177/238 (74%), Gaps = 5/238 (2%)

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+
Sbjct: 1   MSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAM 60

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK--- 240
           RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+R    IK   
Sbjct: 61  RKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRGNTQIKGTG 120

Query: 241 -DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
             KD   G +T++KVVKNK+A PF++   +IMYGEGIS  GELI +     I+ K+GAW+
Sbjct: 121 EHKDHNVGKETKIKVVKNKVAPPFREAFVEIMYGEGISRTGELIKIASDLDIIQKAGAWY 180

Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA-DSLLQEPAINTKDDADK 356
           S+ G+++GQG EN+K +L +N  I + I+  +R + G+   DS +Q   +  K++AD 
Sbjct: 181 SYNGEKIGQGSENAKKYLADNPAIFDEIDHKVRVHFGMTEDDSPVQSELVEEKNEADD 238


>gi|258562165|gb|ACV81803.1| recombinase A [Burkholderia cenocepacia]
 gi|258562173|gb|ACV81807.1| recombinase A [Burkholderia cenocepacia]
 gi|258562175|gb|ACV81808.1| recombinase A [Burkholderia cenocepacia]
          Length = 223

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 163/223 (73%), Positives = 196/223 (87%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 1   LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 61  SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 120

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 121 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 180

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G++
Sbjct: 181 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEK 223


>gi|11245063|gb|AAG33433.1| RecA protein [Vibrio cholerae]
          Length = 234

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 155/231 (67%), Positives = 191/231 (82%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL    DTGEQALEI D L RSG VD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLGFSADTGEQALEICDALARSGRVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRL  RR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLGYRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGV 
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVN 231


>gi|306517555|emb|CBO93068.1| DNA recombinase A [Pantoea stewartii subsp. stewartii]
          Length = 219

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 157/219 (71%), Positives = 191/219 (87%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSL LDIALG GG P GRIVEIYGPE+SGKTTL L  IA +Q+ G TCAF+DAEHALD +
Sbjct: 1   GSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPV 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S
Sbjct: 61  YAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDS 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
             G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR
Sbjct: 121 HMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVR 180

Query: 231 LDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           LDIRR+G+IK+ D++ G++TRVKVVKNK+A+PFKQ EF 
Sbjct: 181 LDIRRIGAIKEGDNVVGSETRVKVVKNKIAAPFKQAEFQ 219


>gi|258562177|gb|ACV81809.1| recombinase A [Burkholderia cenocepacia]
          Length = 223

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 162/223 (72%), Positives = 195/223 (87%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  I + QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 1   LTLQVIDELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 61  SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 120

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 121 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 180

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G++
Sbjct: 181 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEK 223


>gi|258562183|gb|ACV81812.1| recombinase A [Burkholderia cenocepacia]
          Length = 223

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 164/223 (73%), Positives = 196/223 (87%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 1   LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 61  SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 120

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK+A P
Sbjct: 121 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPP 180

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G++
Sbjct: 181 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEK 223


>gi|258562161|gb|ACV81801.1| recombinase A [Burkholderia pyrrocinia]
 gi|258562163|gb|ACV81802.1| recombinase A [Burkholderia stabilis]
          Length = 223

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 162/223 (72%), Positives = 196/223 (87%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 1   LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 61  SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 120

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK  D + GN+TRVKVVKNK++ P
Sbjct: 121 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 180

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G++
Sbjct: 181 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEK 223


>gi|198385751|gb|ACH86219.1| RecA [Ensifer adhaerens]
          Length = 193

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 156/192 (81%), Positives = 177/192 (92%), Gaps = 1/192 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+D++VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAIDVLVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFIN 201
           IS+S C+++FIN
Sbjct: 182 ISKSNCMVIFIN 193


>gi|194277433|gb|ACF39382.1| RecA [Streptomyces sp. FXJ52]
          Length = 212

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 150/211 (71%), Positives = 181/211 (85%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E IEV+S+GS  LD+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG  AFVD
Sbjct: 2   EPIEVISTGSTALDVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVD 61

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA+KLGVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAE
Sbjct: 62  AEHALDPEYAKKLGVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAE 121

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           IEG+MG+S  G+QARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG A
Sbjct: 122 IEGEMGDSHVGLQARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRA 181

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
           LKFY+SVR+DIRR+ ++KD     GN+TR K
Sbjct: 182 LKFYASVRIDIRRIETLKDGTEAVGNRTRCK 212


>gi|11245179|gb|AAG33491.1| RecA protein [Vibrio cholerae]
          Length = 231

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 160/230 (69%), Positives = 198/230 (86%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           A+G GG P GRIVEI+GP SSGKTTL L  IA +Q+ G TCAF+DAEHALDS+YA+KLGV
Sbjct: 1   AIGAGGLPMGRIVEIFGPVSSGKTTLTLELIAAAQREGKTCAFIDAEHALDSVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGV
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGV 230


>gi|258562181|gb|ACV81811.1| recombinase A [Burkholderia cenocepacia]
          Length = 223

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 163/223 (73%), Positives = 195/223 (87%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEIT  LVR
Sbjct: 1   LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITGALVR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ
Sbjct: 61  SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 120

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK+A P
Sbjct: 121 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPP 180

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           F++  FDI+YGEGIS  GE+IDLGV+A IVDK+GAW+S+ G++
Sbjct: 181 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEK 223


>gi|306996353|gb|ADN21396.1| recombination protein A [Rhizobium endophyticum CCGE 2052]
          Length = 192

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 152/191 (79%), Positives = 177/191 (92%), Gaps = 1/191 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LG++ S+ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGAKDSVIE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFI 200
           IS+S  +++FI
Sbjct: 182 ISKSNTMVIFI 192


>gi|58698464|ref|ZP_00373372.1| recA protein [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58535029|gb|EAL59120.1| recA protein [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 235

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 143/228 (62%), Positives = 186/228 (81%)

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           +ISQPDTGEQAL I + LV SGAVD+IVIDSVAALTPRAEIEGDMG+   G+QARL+S  
Sbjct: 1   MISQPDTGEQALHIVEYLVCSGAVDVIVIDSVAALTPRAEIEGDMGDQHMGLQARLLSHG 60

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           LRKLTS++S++ CIL+FINQ+RMKIGV++G+PETTTGGNALKFY+SVRLDIR++G IKDK
Sbjct: 61  LRKLTSAVSKANCILIFINQIRMKIGVVYGNPETTTGGNALKFYTSVRLDIRKIGVIKDK 120

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           ++ITGN+TRVKVVKNK+A PF++ +FDIMY EGIS  GE+ID+G K  +++K+GA++S+ 
Sbjct: 121 ENITGNETRVKVVKNKVAPPFREAKFDIMYNEGISKLGEIIDMGAKLGVLEKAGAYYSYN 180

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350
             RLGQGREN K +L+ N E+A  IE+ +R       +S++ +     
Sbjct: 181 NTRLGQGRENVKTYLKTNKEVANEIETKIRDLLRNHDNSIIIDEDSEQ 228


>gi|325651229|emb|CBY89436.1| RecA protein [Rhizobium leguminosarum]
          Length = 187

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 147/187 (78%), Positives = 173/187 (92%), Gaps = 1/187 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           ALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYG
Sbjct: 1   ALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQAL
Sbjct: 60  PESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S 
Sbjct: 120 EITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSN 179

Query: 195 CILVFIN 201
            +++FIN
Sbjct: 180 TMVIFIN 186


>gi|323147075|gb|ADX32819.1| recombinase A [endophytic bacterium 27(2011)]
          Length = 231

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 159/220 (72%), Positives = 194/220 (88%), Gaps = 1/220 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG++M+LG  G + E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 13  TAEKSKALAAALAQIEKQFGKGSVMRLG-AGEVVEDIQVVSTGSLGLDIALGVGGLPRGR 71

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPD
Sbjct: 72  VVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPD 131

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 132 TGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 191

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+S
Sbjct: 192 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYAS 231


>gi|308171322|gb|ADO15980.1| RecA [Vibrio ichthyoenteri ATCC 700023]
          Length = 227

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 156/226 (69%), Positives = 196/226 (86%)

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VE+YGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDT
Sbjct: 1   VEVYGPESSGKTTLTLELIAAAQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDT 60

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT +
Sbjct: 61  GEQALEICDALARSGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGN 120

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           + +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+
Sbjct: 121 LKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNE 180

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           TR+KVVKNK+A+PFKQ E  I+YG+G +  GEL+DLGVK  +++K+
Sbjct: 181 TRIKVVKNKIAAPFKQAETQILYGQGFNREGELVDLGVKHKLIEKA 226


>gi|307343145|emb|CBJ18102.1| recombinase A [Micromonospora citrea]
          Length = 206

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 143/206 (69%), Positives = 172/206 (83%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDALLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVK 253
           SVRLD+RR+ S+KD   + GN+T  K
Sbjct: 181 SVRLDVRRIESLKDGTDVVGNRTHSK 206


>gi|298103534|emb|CBH19578.1| recombinase A [Mesorhizobium sp. CPS13]
          Length = 189

 Score =  220 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 144/189 (76%), Positives = 171/189 (90%), Gaps = 1/189 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L+AALSQI+R +GKG+IM+LG+   + E I  VS+GSLGLDIALG+GG P+GRI+EIYGP
Sbjct: 2   LDAALSQIERAFGKGSIMRLGANEQVVE-IGTVSTGSLGLDIALGVGGLPRGRIIEIYGP 60

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 61  ESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALE 120

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS  
Sbjct: 121 ICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNT 180

Query: 196 ILVFINQMR 204
           +++FINQ  
Sbjct: 181 MVIFINQDP 189


>gi|254838538|gb|ACT83417.1| recombinase A [Vibrio cholerae]
 gi|254838540|gb|ACT83418.1| recombinase A [Vibrio cholerae]
 gi|254838542|gb|ACT83419.1| recombinase A [Vibrio cholerae]
 gi|254838544|gb|ACT83420.1| recombinase A [Vibrio cholerae]
 gi|254838546|gb|ACT83421.1| recombinase A [Vibrio cholerae]
 gi|254838548|gb|ACT83422.1| recombinase A [Vibrio cholerae]
          Length = 210

 Score =  220 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 147/212 (69%), Positives = 182/212 (85%), Gaps = 2/212 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA
Sbjct: 1   GSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+I
Sbjct: 59  AAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVI 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGV
Sbjct: 119 VVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           MFG+PETTTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 179 MFGNPETTTGGNALKFYASVRLDIRRTGAIKE 210


>gi|32481312|gb|AAP84004.1| catalase [Vibrio cholerae]
          Length = 224

 Score =  220 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 155/224 (69%), Positives = 192/224 (85%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV
Sbjct: 1   ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR
Sbjct: 61  NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G
Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE 281
           +IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GE
Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGE 224


>gi|156902066|gb|ABU96826.1| RecA protein [Vibrio cholerae]
          Length = 226

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 157/225 (69%), Positives = 194/225 (86%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  
Sbjct: 2   GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 61

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 62  LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 121

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 122 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 181

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
            + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLG
Sbjct: 182 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLG 226


>gi|219821015|gb|ACL37628.1| recombinase A [Listeria monocytogenes]
 gi|219821017|gb|ACL37629.1| recombinase A [Listeria monocytogenes]
 gi|219821019|gb|ACL37630.1| recombinase A [Listeria monocytogenes]
 gi|219821021|gb|ACL37631.1| recombinase A [Listeria monocytogenes]
 gi|219821023|gb|ACL37632.1| recombinase A [Listeria monocytogenes]
 gi|219821025|gb|ACL37633.1| recombinase A [Listeria monocytogenes]
 gi|219821027|gb|ACL37634.1| recombinase A [Listeria monocytogenes]
 gi|219821029|gb|ACL37635.1| recombinase A [Listeria monocytogenes]
 gi|219821031|gb|ACL37636.1| recombinase A [Listeria monocytogenes]
 gi|219821033|gb|ACL37637.1| recombinase A [Listeria monocytogenes]
 gi|219821035|gb|ACL37638.1| recombinase A [Listeria monocytogenes]
 gi|219821037|gb|ACL37639.1| recombinase A [Listeria monocytogenes]
 gi|219821039|gb|ACL37640.1| recombinase A [Listeria monocytogenes]
 gi|219821041|gb|ACL37641.1| recombinase A [Listeria monocytogenes]
 gi|219821043|gb|ACL37642.1| recombinase A [Listeria monocytogenes]
 gi|219821045|gb|ACL37643.1| recombinase A [Listeria monocytogenes]
 gi|219821047|gb|ACL37644.1| recombinase A [Listeria monocytogenes]
 gi|219821049|gb|ACL37645.1| recombinase A [Listeria monocytogenes]
 gi|219821051|gb|ACL37646.1| recombinase A [Listeria monocytogenes]
 gi|219821053|gb|ACL37647.1| recombinase A [Listeria monocytogenes]
          Length = 203

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 136/205 (66%), Positives = 170/205 (82%), Gaps = 2/205 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGP
Sbjct: 1   LDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK 
Sbjct: 119 IAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKT 178

Query: 196 ILVFINQMRMKIGVMFGSPETTTGG 220
           I +FINQ+R K+GVMFG+PE T GG
Sbjct: 179 IAIFINQIREKVGVMFGNPEITPGG 203


>gi|307343155|emb|CBJ18107.1| recombinase A [Micromonospora echinofusca]
          Length = 206

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 144/206 (69%), Positives = 173/206 (83%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   LL+SQPDTGEQALEITDMLVRSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDALLVSQPDTGEQALEITDMLVRSGAIDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVK 253
           SVRLD+RR+ S+KD   + GN+T  K
Sbjct: 181 SVRLDVRRIESLKDGTDVVGNRTHSK 206


>gi|268628233|gb|ACZ13515.1| DNA recombination protein [Xenorhabdus szentirmaii]
          Length = 215

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 156/215 (72%), Positives = 186/215 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGRTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEGD+
Sbjct: 61  DPIYAKKLGVDIDNLLCSQPDTGEQALEICDALSRSGAVDVIIVDSVAALTPKAEIEGDI 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           SVRLDIRR GS+K+ D + G++TRVKVVKNK+A+P
Sbjct: 181 SVRLDIRRTGSVKNGDEVVGSETRVKVVKNKVAAP 215


>gi|38091034|emb|CAE52522.1| recombination protein [Lactobacillus delbrueckii subsp.
           delbrueckii]
 gi|38091036|emb|CAE52523.1| recombination protein [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|38091038|emb|CAE52524.1| recombination protein [Lactobacillus delbrueckii subsp. lactis]
          Length = 221

 Score =  219 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 134/222 (60%), Positives = 180/222 (81%), Gaps = 2/222 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           +M++G +  +   I  V SGSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ 
Sbjct: 1   VMRMGEK--VDTQISTVPSGSLALDAALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEV 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT A++DAE+A+D  YA  LGVD+  L++SQP+TGE+ L+I D L+ SGA+DI+V+
Sbjct: 59  QKRGGTAAYIDAENAMDPAYAEALGVDIDQLILSQPNTGEEGLQIADTLISSGAIDIVVV 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMF
Sbjct: 119 DSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGTIAKTKTIAIFINQIREKVGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
           G+PETT GG ALKFYS++RL++RR   IK   ++ GN+ ++K
Sbjct: 179 GNPETTPGGRALKFYSTIRLEVRRAEQIKQSTNVIGNRVKIK 220


>gi|156902074|gb|ABU96830.1| RecA protein [Vibrio cholerae]
          Length = 226

 Score =  219 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 158/225 (70%), Positives = 194/225 (86%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGV++  
Sbjct: 2   GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPIYAKKLGVNIDE 61

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 62  LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 121

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 122 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 181

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
            + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLG
Sbjct: 182 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLG 226


>gi|268628253|gb|ACZ13525.1| DNA recombination protein [Xenorhabdus bovienii]
 gi|268628255|gb|ACZ13526.1| DNA recombination protein [Xenorhabdus bovienii]
 gi|268628257|gb|ACZ13527.1| DNA recombination protein [Xenorhabdus bovienii]
 gi|268628259|gb|ACZ13528.1| DNA recombination protein [Xenorhabdus bovienii]
          Length = 215

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 155/215 (72%), Positives = 186/215 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++
Sbjct: 61  DPVYAKKLGVDIDNLLCSQPDTGEQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEI 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           SVRLDIRR GS+K+ D + G++TRVKVVKNK+A+P
Sbjct: 181 SVRLDIRRTGSVKNGDEVVGSETRVKVVKNKIAAP 215


>gi|268628197|gb|ACZ13497.1| DNA recombination protein [Xenorhabdus ehlersii]
 gi|268628199|gb|ACZ13498.1| DNA recombination protein [Xenorhabdus griffiniae]
 gi|268628201|gb|ACZ13499.1| DNA recombination protein [Xenorhabdus japonica]
 gi|268628203|gb|ACZ13500.1| DNA recombination protein [Xenorhabdus vietnamensis]
 gi|268628221|gb|ACZ13509.1| DNA recombination protein [Xenorhabdus hominickii]
 gi|268628223|gb|ACZ13510.1| DNA recombination protein [Xenorhabdus hominickii]
 gi|268628225|gb|ACZ13511.1| DNA recombination protein [Xenorhabdus hominickii]
 gi|268628229|gb|ACZ13513.1| DNA recombination protein [Xenorhabdus miraniensis]
 gi|268628231|gb|ACZ13514.1| DNA recombination protein [Xenorhabdus beddingii]
 gi|268628235|gb|ACZ13516.1| DNA recombination protein [Xenorhabdus mauleonii]
          Length = 215

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 154/215 (71%), Positives = 186/215 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGRTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++
Sbjct: 61  DPVYAKKLGVDIDNLLCSQPDTGEQALEICDALSRSGAVDVIIVDSVAALTPKAEIEGEI 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           SVRLDIRR GS+K+ D + G++TRVKVVKNK+A+P
Sbjct: 181 SVRLDIRRTGSVKNGDEVVGSETRVKVVKNKVAAP 215


>gi|198385759|gb|ACH86223.1| RecA [Sinorhizobium medicae]
          Length = 192

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 155/191 (81%), Positives = 177/191 (92%), Gaps = 1/191 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERAFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFI 200
           IS+S C+++FI
Sbjct: 182 ISKSNCMVIFI 192


>gi|268628261|gb|ACZ13529.1| DNA recombination protein [Xenorhabdus bovienii]
          Length = 215

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 155/215 (72%), Positives = 186/215 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++
Sbjct: 61  DPVYAKKLGVDIDNLLCSQPDTGEQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEI 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           SVRLDIRR GS+K+ D + G++TRVKVVKNK+A+P
Sbjct: 181 SVRLDIRRTGSVKNGDEVVGSETRVKVVKNKIAAP 215


>gi|23194277|gb|AAN15086.1| RecA protein [Vibrio cholerae]
          Length = 227

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 157/227 (69%), Positives = 194/227 (85%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL
Sbjct: 1   LPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELL 60

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+
Sbjct: 61  VSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAM 120

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ +
Sbjct: 121 RKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGE 180

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS 290
            + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLGVK  
Sbjct: 181 EVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHK 227


>gi|268628215|gb|ACZ13506.1| DNA recombination protein [Xenorhabdus poinarii]
 gi|268628217|gb|ACZ13507.1| DNA recombination protein [Xenorhabdus poinarii]
 gi|268628219|gb|ACZ13508.1| DNA recombination protein [Xenorhabdus poinarii]
 gi|268628227|gb|ACZ13512.1| DNA recombination protein [Xenorhabdus koppenhoeferi]
          Length = 215

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 154/215 (71%), Positives = 186/215 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGRTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++
Sbjct: 61  DPVYAKKLGVDIDNLLCSQPDTGEQALEICDALSRSGAVDVIIVDSVAALTPKAEIEGEI 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           SVRLDIRR GS+K+ D + G++TRVKVVKNK+A+P
Sbjct: 181 SVRLDIRRTGSVKNGDEVIGSETRVKVVKNKVAAP 215


>gi|309799371|ref|ZP_07693614.1| RecA protein [Streptococcus infantis SK1302]
 gi|308117038|gb|EFO54471.1| RecA protein [Streptococcus infantis SK1302]
          Length = 257

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 125/246 (50%), Positives = 178/246 (72%), Gaps = 4/246 (1%)

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           +L+SQPD+GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+GD+G+S  G+QAR+MSQ
Sbjct: 1   MLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQ 60

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK- 240
           A+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R    IK 
Sbjct: 61  AMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIKG 120

Query: 241 ---DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
               KD+  G +T++KVVKNK+A PFK+   +IMYGEGIS  GEL+ +     I+ K+GA
Sbjct: 121 TGDQKDTSVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISRTGELLKIASDLDIIKKAGA 180

Query: 298 WFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357
           W+S+K +++GQG EN+K +L ++ EI + I+  +R   GL+ D  + +  +   +    +
Sbjct: 181 WYSYKDEKIGQGSENAKKYLADHPEIFDEIDHQVRVKFGLIEDDAVADEKVAPVESEVAN 240

Query: 358 DTDNVE 363
               ++
Sbjct: 241 QEVTLD 246


>gi|268628205|gb|ACZ13501.1| DNA recombination protein [Xenorhabdus doucetiae]
 gi|268628207|gb|ACZ13502.1| DNA recombination protein [Xenorhabdus romanii]
 gi|268628209|gb|ACZ13503.1| DNA recombination protein [Xenorhabdus kozodoii]
 gi|268628211|gb|ACZ13504.1| DNA recombination protein [Xenorhabdus kozodoii]
 gi|268628213|gb|ACZ13505.1| DNA recombination protein [Xenorhabdus kozodoii]
          Length = 215

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 153/215 (71%), Positives = 186/215 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGRTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++
Sbjct: 61  DPVYAKKLGVDIDNLLCSQPDTGEQALEICDALSRSGAVDVIIVDSVAALTPKAEIEGEI 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           SVRLDIRR GS+K+ + + G++TRVKVVKNK+A+P
Sbjct: 181 SVRLDIRRTGSVKNGEEVVGSETRVKVVKNKVAAP 215


>gi|6694847|gb|AAF25432.1|AF214785_1 RecA protein [Arthrobacter polychromogenes]
          Length = 218

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 151/218 (69%), Positives = 183/218 (83%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGV
Sbjct: 1   ALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDAEHALDPEYAAKLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           D   LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIEGDMG+S  G+QAR
Sbjct: 61  DTDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           LMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ 
Sbjct: 121 LMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQ 180

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275
           ++K+     GN+T+ K+VKNKMA PFK  EFDI+YG+G
Sbjct: 181 TLKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQG 218


>gi|306517561|emb|CBO93073.1| DNA recombinase A [Pantoea ananatis]
          Length = 220

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 155/216 (71%), Positives = 189/216 (87%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GSL LDIALG GG P GRIVEIYGPE+SGKTTL L  IA +Q+ G TCAF+DAEHALD 
Sbjct: 4   TGSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIAAAQRKGKTCAFIDAEHALDP 63

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+
Sbjct: 64  IYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGD 123

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SV
Sbjct: 124 SHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASV 183

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           RLDIRR+G+IK+ D++ G++TRVKVVKNK+A+PFK 
Sbjct: 184 RLDIRRIGAIKEGDNVVGSETRVKVVKNKIAAPFKP 219


>gi|198385765|gb|ACH86226.1| RecA [Ensifer sp. T173]
          Length = 193

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 156/191 (81%), Positives = 176/191 (92%), Gaps = 1/191 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+D++VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAIDVLVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 181

Query: 190 ISRSKCILVFI 200
           IS+S C+++FI
Sbjct: 182 ISKSNCMVIFI 192


>gi|117675797|emb|CAL69169.1| recombinase A [Curtobacterium albidum]
          Length = 219

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 150/219 (68%), Positives = 178/219 (81%)

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI 
Sbjct: 1   SGKTTLTLHAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIA 60

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           DMLVRSG++D+IV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL   +++++  +
Sbjct: 61  DMLVRSGSIDLIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGGLNQTQTTM 120

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           +FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++K      GN+TRVKVVKN
Sbjct: 121 IFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKSGTDAVGNRTRVKVVKN 180

Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
           KMA PFKQ EFDI+YG GIS  G L+D GV   IV KSG
Sbjct: 181 KMAPPFKQAEFDILYGTGISREGSLLDFGVDHGIVKKSG 219


>gi|268628535|gb|ACZ13666.1| DNA recombination protein [Photorhabdus temperata subsp. temperata]
 gi|268628537|gb|ACZ13667.1| DNA recombination protein [Photorhabdus temperata subsp. temperata]
 gi|268628539|gb|ACZ13668.1| DNA recombination protein [Photorhabdus temperata subsp. temperata]
          Length = 215

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 153/215 (71%), Positives = 187/215 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++
Sbjct: 61  DPVYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKSSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           SVRLDIRR+GS+K+ + + G++TRVKVVKNK+A+P
Sbjct: 181 SVRLDIRRIGSVKNGEEVVGSETRVKVVKNKVAAP 215


>gi|268628237|gb|ACZ13517.1| DNA recombination protein [Xenorhabdus budapestensis]
 gi|268628239|gb|ACZ13518.1| DNA recombination protein [Xenorhabdus budapestensis]
 gi|268628241|gb|ACZ13519.1| DNA recombination protein [Xenorhabdus indica]
 gi|268628243|gb|ACZ13520.1| DNA recombination protein [Xenorhabdus indica]
 gi|268628245|gb|ACZ13521.1| DNA recombination protein [Xenorhabdus cabanillasii]
 gi|268628247|gb|ACZ13522.1| DNA recombination protein [Xenorhabdus innexi]
 gi|268628249|gb|ACZ13523.1| DNA recombination protein [Xenorhabdus innexi]
 gi|268628251|gb|ACZ13524.1| DNA recombination protein [Xenorhabdus stockiae]
          Length = 215

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 155/215 (72%), Positives = 186/215 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGRTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++
Sbjct: 61  DPVYAKKLGVDIDNLLCSQPDTGEQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEI 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           SVRLDIRR GS+K+ D + G++TRVKVVKNK+A+P
Sbjct: 181 SVRLDIRRTGSVKNSDEVVGSETRVKVVKNKVAAP 215


>gi|162955834|gb|ABY25292.1| recombinant DNA repair protein [Vibrio sp. MSSRF6]
          Length = 210

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 148/212 (69%), Positives = 182/212 (85%), Gaps = 2/212 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +
Sbjct: 1   IMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAAA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           Q+ G TCAF+DAEHALD +YA+KLGVD+ +LL+SQPDTGEQALEI D L RSGA+D++V+
Sbjct: 59  QREGKTCAFIDAEHALDPVYAKKLGVDIDSLLVSQPDTGEQALEICDALARSGAIDVMVV 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMF
Sbjct: 119 DSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           G+PETTTGGNALKFY+SVRLDIRR GSIK+ D
Sbjct: 179 GNPETTTGGNALKFYASVRLDIRRTGSIKEGD 210


>gi|268628523|gb|ACZ13660.1| DNA recombination protein [Photorhabdus temperata subsp.
           tasmaniensis]
 gi|268628525|gb|ACZ13661.1| DNA recombination protein [Photorhabdus temperata subsp.
           tasmaniensis]
 gi|268628527|gb|ACZ13662.1| DNA recombination protein [Photorhabdus temperata subsp.
           tasmaniensis]
 gi|268628529|gb|ACZ13663.1| DNA recombination protein [Photorhabdus temperata subsp. khanii]
 gi|268628531|gb|ACZ13664.1| DNA recombination protein [Photorhabdus temperata subsp. khanii]
 gi|268628533|gb|ACZ13665.1| DNA recombination protein [Photorhabdus temperata subsp. khanii
           NC19]
 gi|268628541|gb|ACZ13669.1| DNA recombination protein [Photorhabdus temperata subsp.
           thracensis]
 gi|268628543|gb|ACZ13670.1| DNA recombination protein [Photorhabdus temperata subsp.
           thracensis]
 gi|268628549|gb|ACZ13673.1| DNA recombination protein [Photorhabdus sp. Q614]
          Length = 215

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 153/215 (71%), Positives = 187/215 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++
Sbjct: 61  DPVYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKSSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           SVRLDIRR+GS+K+ + + G++TRVKVVKNK+A+P
Sbjct: 181 SVRLDIRRIGSVKNGEEVVGSETRVKVVKNKVAAP 215


>gi|323147077|gb|ADX32820.1| recombinase A [endophytic bacterium 28(2011)]
          Length = 222

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 157/217 (72%), Positives = 191/217 (88%), Gaps = 1/217 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG++M+LG  G + E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 7   TAEKSKALAAALAQIEKQFGKGSVMRLG-AGEVVEDIQVVSTGSLGLDIALGVGGLPRGR 65

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPD
Sbjct: 66  VVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPD 125

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 126 TGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 185

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKF
Sbjct: 186 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKF 222


>gi|157073237|gb|ABV09039.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073239|gb|ABV09040.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073241|gb|ABV09041.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073243|gb|ABV09042.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073245|gb|ABV09043.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073247|gb|ABV09044.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073249|gb|ABV09045.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073251|gb|ABV09046.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073253|gb|ABV09047.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073255|gb|ABV09048.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073257|gb|ABV09049.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073259|gb|ABV09050.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073261|gb|ABV09051.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073263|gb|ABV09052.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073265|gb|ABV09053.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073267|gb|ABV09054.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073269|gb|ABV09055.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073271|gb|ABV09056.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073273|gb|ABV09057.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073275|gb|ABV09058.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073277|gb|ABV09059.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073279|gb|ABV09060.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073281|gb|ABV09061.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073283|gb|ABV09062.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073285|gb|ABV09063.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073287|gb|ABV09064.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073289|gb|ABV09065.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073291|gb|ABV09066.1| recombination-repair protein [Vibrio parahaemolyticus]
 gi|157073293|gb|ABV09067.1| recombination-repair protein [Vibrio parahaemolyticus]
          Length = 211

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 152/211 (72%), Positives = 185/211 (87%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+M
Sbjct: 61  DPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           SVRLDIRR G+IK+ D + GN+TR+KVVKNK
Sbjct: 181 SVRLDIRRTGAIKEGDEVVGNETRIKVVKNK 211


>gi|268628499|gb|ACZ13648.1| DNA recombination protein [Photorhabdus luminescens subsp. kayaii]
 gi|268628501|gb|ACZ13649.1| DNA recombination protein [Photorhabdus luminescens subsp. kayaii]
 gi|268628503|gb|ACZ13650.1| DNA recombination protein [Photorhabdus luminescens subsp. kayaii]
 gi|268628505|gb|ACZ13651.1| DNA recombination protein [Photorhabdus luminescens subsp. kayaii]
 gi|268628507|gb|ACZ13652.1| DNA recombination protein [Photorhabdus luminescens subsp. kayaii]
 gi|268628509|gb|ACZ13653.1| DNA recombination protein [Photorhabdus luminescens subsp.
           laumondii]
 gi|268628511|gb|ACZ13654.1| DNA recombination protein [Photorhabdus luminescens subsp.
           luminescens]
 gi|268628513|gb|ACZ13655.1| DNA recombination protein [Photorhabdus luminescens subsp.
           luminescens]
 gi|268628519|gb|ACZ13658.1| DNA recombination protein [Photorhabdus luminescens subsp.
           hainanensis]
 gi|268628521|gb|ACZ13659.1| DNA recombination protein [Photorhabdus luminescens subsp.
           akhurstii]
          Length = 215

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 154/215 (71%), Positives = 187/215 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++
Sbjct: 61  DPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKSSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           SVRLDIRR+GS+K+ + + G++TRVKVVKNK+A+P
Sbjct: 181 SVRLDIRRIGSVKNGEEVVGSETRVKVVKNKVAAP 215


>gi|156902080|gb|ABU96833.1| RecA protein [Vibrio cholerae]
          Length = 225

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 156/224 (69%), Positives = 193/224 (86%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  
Sbjct: 2   GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 61

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 62  LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 121

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 122 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 181

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
            + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDL
Sbjct: 182 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDL 225


>gi|268628545|gb|ACZ13671.1| DNA recombination protein [Photorhabdus asymbiotica subsp.
           asymbiotica]
 gi|268628547|gb|ACZ13672.1| DNA recombination protein [Photorhabdus asymbiotica subsp.
           australis]
          Length = 215

 Score =  218 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 153/215 (71%), Positives = 187/215 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++
Sbjct: 61  DPVYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKSSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           SVRLDIRR+GS+K+ + + G++TRVKVVKNK+A+P
Sbjct: 181 SVRLDIRRIGSVKNGEEVIGSETRVKVVKNKVAAP 215


>gi|117675779|emb|CAL69160.1| recombinase A [Leifsonia poae]
          Length = 219

 Score =  218 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 155/219 (70%), Positives = 181/219 (82%)

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTL LH IA +Q+ GG  AF+DAEHALD  YARKLGVD+  LL+SQPDTGEQALEI D
Sbjct: 1   GKTTLTLHAIANAQRAGGIAAFIDAEHALDPEYARKLGVDIDALLVSQPDTGEQALEIAD 60

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           MLVRSG++D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  +S++   ++
Sbjct: 61  MLVRSGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLSQTNTTMI 120

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNK
Sbjct: 121 FINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGAEAVGNRTRVKVVKNK 180

Query: 259 MASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           MA PFKQ EFDI+YG GIS  G L+D GV+ +IV KSGA
Sbjct: 181 MAPPFKQAEFDILYGVGISREGSLLDFGVEHAIVKKSGA 219


>gi|33636164|emb|CAE18403.1| RecA protein [Lactobacillus fermentum]
          Length = 219

 Score =  218 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 134/220 (60%), Positives = 177/220 (80%), Gaps = 2/220 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G        I  +SSGSL +D ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A
Sbjct: 1   GSIMRMGDAADT--KIATISSGSLAIDEALGVGGYPRGRIIEMYGPESSGKTTVALHAVA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + Q+ GGT A++DAE+ALD  YA  LGV + +LL+SQPDTGEQ LEI D L+ SGAVDI+
Sbjct: 59  EVQRRGGTAAYIDAENALDPQYATALGVQINDLLLSQPDTGEQGLEIADALIASGAVDIV 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I+++K I +FINQ+R K+GV
Sbjct: 119 VVDSVAALVPRAEIEGEMGDTHVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           MFG+PETT GG ALKFYS++R++IRR   +K+   + GN+
Sbjct: 179 MFGNPETTPGGRALKFYSTIRMEIRRGEQLKNGTDVIGNR 218


>gi|268628515|gb|ACZ13656.1| DNA recombination protein [Photorhabdus luminescens subsp.
           caribbeanensis]
 gi|268628517|gb|ACZ13657.1| DNA recombination protein [Photorhabdus luminescens subsp.
           caribbeanensis]
          Length = 215

 Score =  218 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 154/215 (71%), Positives = 187/215 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++
Sbjct: 61  DPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKSSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           SVRLDIRR+GS+K+ + + G++TRVKVVKNK+A+P
Sbjct: 181 SVRLDIRRIGSVKNGEEVIGSETRVKVVKNKVAAP 215


>gi|298103532|emb|CBH19577.1| recombinase A [Mesorhizobium sp. CMSS1]
          Length = 188

 Score =  218 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 145/188 (77%), Positives = 171/188 (90%), Gaps = 1/188 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           +AALSQI+R +GKG+IM+LG+   I E IE V +GSLGLDIALG+GG P+GRI+EIYGPE
Sbjct: 2   DAALSQIERAFGKGSIMRLGANEKIVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPE 60

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI
Sbjct: 61  SSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 120

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS  +
Sbjct: 121 CDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTM 180

Query: 197 LVFINQMR 204
           ++FI Q+R
Sbjct: 181 VIFITQIR 188


>gi|33087889|gb|AAP93075.1| recombination protein A [Yersinia pseudotuberculosis]
          Length = 196

 Score =  218 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 131/198 (66%), Positives = 162/198 (81%), Gaps = 2/198 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 1   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 58

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 59  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 118

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 119 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 178

Query: 191 SRSKCILVFINQMRMKIG 208
             +  +L+FINQ+RMKIG
Sbjct: 179 KNANTLLIFINQIRMKIG 196


>gi|29652218|gb|AAO87770.1| RecA [Listeria monocytogenes]
          Length = 205

 Score =  218 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 137/207 (66%), Positives = 171/207 (82%), Gaps = 2/207 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           + AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPE
Sbjct: 1   DQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPE 58

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI
Sbjct: 59  SSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEI 118

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I
Sbjct: 119 AEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTI 178

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNAL 223
            +FINQ+R K+GVMFG+PE T GG AL
Sbjct: 179 AIFINQIREKVGVMFGNPEITPGGRAL 205


>gi|323147041|gb|ADX32802.1| recombinase A [endophytic bacterium 13(2011)]
 gi|323147045|gb|ADX32804.1| recombinase A [endophytic bacterium 10(2011)]
 gi|323147047|gb|ADX32805.1| recombinase A [endophytic bacterium 8(2011)]
 gi|323147055|gb|ADX32809.1| recombinase A [endophytic bacterium 16(2011)]
 gi|323147057|gb|ADX32810.1| recombinase A [endophytic bacterium 17(2011)]
 gi|323147063|gb|ADX32813.1| recombinase A [endophytic bacterium 23(2011)]
 gi|323147065|gb|ADX32814.1| recombinase A [endophytic bacterium 24(2011)]
          Length = 224

 Score =  218 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 157/217 (72%), Positives = 191/217 (88%), Gaps = 1/217 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG++M+LG  G + E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 9   TAEKSKALAAALAQIEKQFGKGSVMRLG-AGEVVEDIQVVSTGSLGLDIALGVGGLPRGR 67

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPD
Sbjct: 68  VVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPD 127

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 128 TGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 187

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKF
Sbjct: 188 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKF 224


>gi|47109408|emb|CAG28700.1| recA [Propionibacterium acidipropionici]
          Length = 215

 Score =  218 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 146/216 (67%), Positives = 178/216 (82%), Gaps = 2/216 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           +M+LG + ++   I  + +GS+ LD+ALG+GG P+GRIVEIYGPES GKTTLALH IA +
Sbjct: 1   VMRLGDRETV--KIPAIPTGSVALDVALGVGGLPRGRIVEIYGPESGGKTTLALHAIANA 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           Q  GG CAF+DAEHALD  YA+ LGVD  NLLISQPD GEQALEI D LVRSGA+++IVI
Sbjct: 59  QAEGGICAFIDAEHALDPEYAKNLGVDTDNLLISQPDNGEQALEIADTLVRSGALELIVI 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAALTP+AEIEGDMG+S  G+QARLMSQALRK+T ++S +    +FINQ+R KIGVMF
Sbjct: 119 DSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKMTGALSGAGTTAIFINQLREKIGVMF 178

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           G+PETTTGG ALKFYSSVRLD+RR+ ++KD D + G
Sbjct: 179 GNPETTTGGRALKFYSSVRLDVRRIQTLKDGDEMVG 214


>gi|242059871|ref|XP_002459081.1| hypothetical protein SORBIDRAFT_03g045520 [Sorghum bicolor]
 gi|241931056|gb|EES04201.1| hypothetical protein SORBIDRAFT_03g045520 [Sorghum bicolor]
          Length = 760

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 129/325 (39%), Positives = 199/325 (61%), Gaps = 7/325 (2%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           ++K  +L  A+SQ+   + + + + L  + S      VVS+GSL LD+ALG+GG PKGR+
Sbjct: 82  IEKESSLNIAVSQLASDFDRESNLCL-ERFSRTRKASVVSTGSLKLDLALGVGGLPKGRM 140

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYG E+SGKTTLALH + ++QK GG CA++DAE+A +  +A  +GVD + LLI+QPD+
Sbjct: 141 VEIYGKEASGKTTLALHVVKEAQKNGGYCAYIDAENAFNPSFAEAIGVDSERLLIAQPDS 200

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
            E +L I + LV      ++V  SVAAL P+ EIEG++  +   +Q+RLM++ALRK+  +
Sbjct: 201 AENSLSIVNSLVGGSVAVVVVD-SVAALIPKCEIEGEIYTNSEDIQSRLMTRALRKIQYT 259

Query: 190 ISRSKCILVFINQMRMKIGVMFGS---PETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           + RS+ +++F+NQ+R K           E   GGNAL FYS+VR+   R      +D  T
Sbjct: 260 LCRSETLIIFVNQVRTKRTSKNFPGIYKEVPCGGNALGFYSAVRMRTSRRELRYSEDEAT 319

Query: 247 GNQTRVKVVKNKMASP-FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           G    V+++KNK+A    K+   DI +G+GI    E++++     ++ K G  +      
Sbjct: 320 GIGISVQIIKNKLAPASLKEAGIDIRFGKGICHESEILEVASSVGVILKDGCGYWINNVF 379

Query: 306 LGQGRENSKIFLRENIEIAENIESL 330
           L  G+  ++ FLREN  +A+ I S 
Sbjct: 380 LT-GKLEAEKFLRENAAVADEICST 403


>gi|295646433|gb|ADG23042.1| recombinase A [Erwinia sp. CECT 7348]
          Length = 213

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 150/212 (70%), Positives = 182/212 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DA
Sbjct: 2   DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIASAQRKGKTCAFIDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEI
Sbjct: 62  EHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEI 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG++G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 122 EGEIGDSHMGLAARMMSQAMRKLAGNLKNSGTLLIFINQIRMKIGVMFGNPETTTGGNAL 181

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           KFY+SVRLDIRR+G+IK+ D + G++TRVKVV
Sbjct: 182 KFYASVRLDIRRIGAIKEGDEVVGSETRVKVV 213


>gi|323147037|gb|ADX32800.1| recombinase A [endophytic bacterium 12(2011)]
 gi|323147039|gb|ADX32801.1| recombinase A [endophytic bacterium 9(2011)]
 gi|323147071|gb|ADX32817.1| recombinase A [endophytic bacterium 25(2011)]
          Length = 225

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 157/217 (72%), Positives = 191/217 (88%), Gaps = 1/217 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG++M+LG  G + E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 10  TAEKSKALAAALAQIEKQFGKGSVMRLG-AGEVVEDIQVVSTGSLGLDIALGVGGLPRGR 68

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPD
Sbjct: 69  VVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPD 128

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 129 TGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 188

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKF
Sbjct: 189 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKF 225


>gi|37999806|sp|Q9REJ6|RECA_ARTAU RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|6694855|gb|AAF25440.1|AF214793_1 RecA protein [Arthrobacter aurescens]
          Length = 218

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 151/218 (69%), Positives = 183/218 (83%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD
Sbjct: 1   LGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPDYAAKLGVD 60

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
              LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEIEG+MG+S  G+QARL
Sbjct: 61  TDALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIEGEMGDSHVGLQARL 120

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ +
Sbjct: 121 MSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIQT 180

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276
           +K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GI
Sbjct: 181 LKEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQGI 218


>gi|29652043|gb|AAO87684.1| RecA [Listeria monocytogenes]
 gi|29652128|gb|AAO87725.1| RecA [Listeria monocytogenes]
          Length = 204

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 136/206 (66%), Positives = 170/206 (82%), Gaps = 2/206 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           + AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPE
Sbjct: 1   DQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPE 58

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI
Sbjct: 59  SSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEI 118

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I
Sbjct: 119 AEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTI 178

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNA 222
            +FINQ+R K+GVMFG+PE T GG A
Sbjct: 179 AIFINQIREKVGVMFGNPEITPGGRA 204


>gi|307343149|emb|CBJ18104.1| recombinase A [Micromonospora coriariae]
          Length = 206

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 141/206 (68%), Positives = 172/206 (83%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVASAQRAGGIAAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPDYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVK 253
           SVRLD+RR+ S+KD   + GN+T  K
Sbjct: 181 SVRLDVRRIESLKDGTDVVGNRTHSK 206


>gi|298103530|emb|CBH19576.1| recombinase A [Mesorhizobium sp. CMSS27]
          Length = 187

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 145/188 (77%), Positives = 171/188 (90%), Gaps = 1/188 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           +AALSQI+R +GKG+IM+LG+   I E IE V +GSLGLDIALG+GG P+GRI+EIYGPE
Sbjct: 1   DAALSQIERAFGKGSIMRLGANEKIVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS  +
Sbjct: 120 CDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTM 179

Query: 197 LVFINQMR 204
           ++FI Q+R
Sbjct: 180 VIFITQIR 187


>gi|157493193|gb|ABV57962.1| RecA [Vibrio mimicus]
          Length = 224

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 156/224 (69%), Positives = 193/224 (86%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  L
Sbjct: 1   GLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDEL 60

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           L+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA
Sbjct: 61  LVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQA 120

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           +RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ 
Sbjct: 121 MRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEG 180

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
           + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELIDLG
Sbjct: 181 EEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLG 224


>gi|325651177|emb|CBY89410.1| RecA protein [Mesorhizobium loti]
 gi|325651199|emb|CBY89421.1| RecA protein [Mesorhizobium sp. R-46044]
 gi|325651201|emb|CBY89422.1| RecA protein [Mesorhizobium sp. R-46045]
          Length = 183

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 145/184 (78%), Positives = 168/184 (91%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRIVE
Sbjct: 1   KSKALDAALSQIERAFGKGSIMRLGANDQVVE-IETVPTGSLGLDIALGVGGLPRGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           RS  
Sbjct: 180 RSNT 183


>gi|262064658|gb|ACY07563.1| recombinase A [Rhizobium sp. RPVR24]
          Length = 191

 Score =  217 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 150/188 (79%), Positives = 173/188 (92%), Gaps = 1/188 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P
Sbjct: 4   EXKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLP 62

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 63  RGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 122

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 123 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 182

Query: 186 LTSSISRS 193
           LT+SIS+S
Sbjct: 183 LTASISKS 190


>gi|311692219|dbj|BAJ25724.1| recombinase A [Rhizobium sp. I132]
 gi|311692221|dbj|BAJ25725.1| recombinase A [Rhizobium sp. I213]
 gi|311692223|dbj|BAJ25726.1| recombinase A [Rhizobium sp. I231]
 gi|311692225|dbj|BAJ25727.1| recombinase A [Rhizobium sp. I312]
 gi|311692229|dbj|BAJ25729.1| recombinase A [Rhizobium sp. I314]
 gi|311692235|dbj|BAJ25732.1| recombinase A [Rhizobium sp. O123]
 gi|311692237|dbj|BAJ25733.1| recombinase A [Rhizobium sp. O312]
 gi|311692241|dbj|BAJ25735.1| recombinase A [Rhizobium sp. T134]
          Length = 186

 Score =  217 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 147/187 (78%), Positives = 173/187 (92%), Gaps = 1/187 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKCILV 198
           +S  +++
Sbjct: 180 KSNTMVI 186


>gi|325651195|emb|CBY89419.1| RecA protein [Mesorhizobium sp. R-46042]
 gi|325651197|emb|CBY89420.1| RecA protein [Mesorhizobium sp. R-46043]
 gi|325651203|emb|CBY89423.1| RecA protein [Mesorhizobium sp. R-46071]
 gi|325651205|emb|CBY89424.1| RecA protein [Mesorhizobium sp. R-46074]
 gi|325651213|emb|CBY89428.1| RecA protein [Mesorhizobium sp. R-46209]
          Length = 183

 Score =  217 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 144/184 (78%), Positives = 168/184 (91%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI+E
Sbjct: 1   KSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           RS  
Sbjct: 180 RSNT 183


>gi|157493225|gb|ABV57978.1| RecA [Vibrio cholerae]
          Length = 220

 Score =  217 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 155/220 (70%), Positives = 191/220 (86%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+K
Sbjct: 1   LDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKK 60

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           LGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+
Sbjct: 61  LGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGL 120

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
           QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIR
Sbjct: 121 QARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR 180

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           R G+IK+ + + GN+TR+KVVKNK+A+PFK+    IMYG+
Sbjct: 181 RTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQ 220


>gi|33636162|emb|CAE18402.1| RecA protein [Lactobacillus fermentum]
          Length = 219

 Score =  217 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 133/220 (60%), Positives = 176/220 (80%), Gaps = 2/220 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM++G           +SSGSL +D ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A
Sbjct: 1   GSIMRMGDAADTKNA--TISSGSLAIDEALGVGGYPRGRIIEMYGPESSGKTTVALHAVA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + Q+ GGT A++DAE+ALD  YA  LGV + +LL+SQPDTGEQ LEI D L+ SGAVDI+
Sbjct: 59  EVQRRGGTAAYIDAENALDPQYATALGVQINDLLLSQPDTGEQGLEIADALIASGAVDIV 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I+++K I +FINQ+R K+GV
Sbjct: 119 VVDSVAALVPRAEIEGEMGDTHVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           MFG+PETT GG ALKFYS++R++IRR   +K+   + GN+
Sbjct: 179 MFGNPETTPGGRALKFYSTIRMEIRRGEQLKNGTDVIGNR 218


>gi|262064656|gb|ACY07562.1| recombinase A [Rhizobium sp. RPVR04]
          Length = 190

 Score =  217 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 150/188 (79%), Positives = 173/188 (92%), Gaps = 1/188 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P
Sbjct: 4   EXKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLP 62

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 63  RGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 122

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 123 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 182

Query: 186 LTSSISRS 193
           LT+SIS+S
Sbjct: 183 LTASISKS 190


>gi|29652220|gb|AAO87771.1| RecA [Listeria monocytogenes]
          Length = 201

 Score =  217 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 134/203 (66%), Positives = 168/203 (82%), Gaps = 2/203 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           + AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPE
Sbjct: 1   DQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPE 58

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI
Sbjct: 59  SSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEI 118

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I
Sbjct: 119 AEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTI 178

Query: 197 LVFINQMRMKIGVMFGSPETTTG 219
            +FINQ+R K+GVMFG+PE T G
Sbjct: 179 AIFINQIREKVGVMFGNPEITPG 201


>gi|110003025|emb|CAJ57799.1| recombinase A [Mesorhizobium loti]
 gi|110003027|emb|CAJ57800.1| recombinase A [Mesorhizobium mediterraneum]
 gi|325651179|emb|CBY89411.1| RecA protein [Mesorhizobium sp. R-45754]
 gi|325651181|emb|CBY89412.1| RecA protein [Mesorhizobium sp. R-45755]
 gi|325651183|emb|CBY89413.1| RecA protein [Mesorhizobium sp. R-45768]
 gi|325651189|emb|CBY89416.1| RecA protein [Mesorhizobium sp. R-45567]
 gi|325651193|emb|CBY89418.1| RecA protein [Mesorhizobium sp. R-45615]
 gi|325651207|emb|CBY89425.1| RecA protein [Mesorhizobium sp. R-46108]
 gi|325651209|emb|CBY89426.1| RecA protein [Mesorhizobium sp. R-46110]
 gi|325651211|emb|CBY89427.1| RecA protein [Mesorhizobium sp. R-45994]
          Length = 183

 Score =  217 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 145/184 (78%), Positives = 168/184 (91%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRIVE
Sbjct: 1   KSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           RS  
Sbjct: 180 RSNT 183


>gi|148978184|ref|ZP_01814714.1| recombinase A [Vibrionales bacterium SWAT-3]
 gi|145962606|gb|EDK27882.1| recombinase A [Vibrionales bacterium SWAT-3]
          Length = 207

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 123/185 (66%), Positives = 159/185 (85%)

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG
Sbjct: 1   MVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIG 60

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           VMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ E 
Sbjct: 61  VMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQAET 120

Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
            I+YG+G +  GELIDLGVK  +VDK+GAW+S+KG ++GQG+ NS  FLREN EIA  ++
Sbjct: 121 QILYGQGFNREGELIDLGVKNKLVDKAGAWYSYKGDKIGQGKSNSCKFLRENPEIALELD 180

Query: 329 SLLRQ 333
           + LR+
Sbjct: 181 TKLRE 185


>gi|229174446|ref|ZP_04301978.1| Endonuclease PI-MboI [Bacillus cereus MM3]
 gi|228609006|gb|EEK66296.1| Endonuclease PI-MboI [Bacillus cereus MM3]
          Length = 208

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 134/206 (65%), Positives = 171/206 (83%), Gaps = 2/206 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG Q      I  +SSGSL LD+ALG+GG+P+GR
Sbjct: 1   MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERR--ISTISSGSLALDVALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPD
Sbjct: 59  IIEIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSP 214
           +I++SK I +FINQ+R K+GVMFG+ 
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNQ 204


>gi|307343414|emb|CBJ18148.1| recombinase A [Micromonospora sp. CR38]
          Length = 213

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 141/204 (69%), Positives = 173/204 (84%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           ++ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH++A +Q+ GG  AF+DAEHA
Sbjct: 8   IIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHSVASAQRLGGIAAFIDAEHA 67

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YA+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+
Sbjct: 68  LDPEYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGE 127

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+S  G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY
Sbjct: 128 MGDSHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFY 187

Query: 227 SSVRLDIRRVGSIKDKDSITGNQT 250
           +SVRLD+RR+ S+KD   + GN+T
Sbjct: 188 ASVRLDVRRIESLKDGTDVVGNRT 211


>gi|323147043|gb|ADX32803.1| recombinase A [endophytic bacterium 14(2011)]
          Length = 223

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 156/216 (72%), Positives = 190/216 (87%), Gaps = 1/216 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG++M+LG  G + E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 9   TAEKSKALAAALAQIEKQFGKGSVMRLG-AGEVVEDIQVVSTGSLGLDIALGVGGLPRGR 67

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPD
Sbjct: 68  VVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPD 127

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 128 TGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 187

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 188 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALK 223


>gi|228909604|ref|ZP_04073427.1| Endonuclease PI-MboI [Bacillus thuringiensis IBL 200]
 gi|229098250|ref|ZP_04229197.1| Endonuclease PI-MboI [Bacillus cereus Rock3-29]
 gi|229117267|ref|ZP_04246645.1| Endonuclease PI-MboI [Bacillus cereus Rock1-3]
 gi|228666167|gb|EEL21631.1| Endonuclease PI-MboI [Bacillus cereus Rock1-3]
 gi|228685148|gb|EEL39079.1| Endonuclease PI-MboI [Bacillus cereus Rock3-29]
 gi|228849893|gb|EEM94724.1| Endonuclease PI-MboI [Bacillus thuringiensis IBL 200]
          Length = 208

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 134/206 (65%), Positives = 171/206 (83%), Gaps = 2/206 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG Q      I  +SSGSL LD+ALG+GG+P+GR
Sbjct: 1   MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERR--ISTISSGSLALDVALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPD
Sbjct: 59  IIEIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSP 214
           +I++SK I +FINQ+R K+GVMFG+ 
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNQ 204


>gi|117675765|emb|CAL69153.1| recombinase A [Okibacterium fritillariae]
          Length = 219

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 154/219 (70%), Positives = 181/219 (82%)

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTL LH IA +Q+ GG  AF+DAEHALD  YARKLGVD+  LL+SQPDTGEQALEI D
Sbjct: 1   GKTTLTLHAIANAQRAGGIAAFIDAEHALDPEYARKLGVDIDALLVSQPDTGEQALEIAD 60

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           ML+RSG++D++VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  +S++K   +
Sbjct: 61  MLIRSGSIDLVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLSQTKTTAI 120

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           FINQ+R KIGV FGSPETT GG ALKFY+SVR+DIRR+ ++KD     GN+TRVKVVKNK
Sbjct: 121 FINQLREKIGVFFGSPETTAGGKALKFYASVRMDIRRIETLKDGTEAVGNRTRVKVVKNK 180

Query: 259 MASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           MA PFKQ EFDI+YG GIS  G LID GV+ +IV KSGA
Sbjct: 181 MAPPFKQAEFDILYGIGISREGSLIDFGVEHAIVKKSGA 219


>gi|229031411|ref|ZP_04187412.1| Endonuclease PI-MboI [Bacillus cereus AH1271]
 gi|229162716|ref|ZP_04290673.1| Endonuclease PI-MboI [Bacillus cereus R309803]
 gi|228620598|gb|EEK77467.1| Endonuclease PI-MboI [Bacillus cereus R309803]
 gi|228729906|gb|EEL80885.1| Endonuclease PI-MboI [Bacillus cereus AH1271]
          Length = 208

 Score =  216 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 133/206 (64%), Positives = 171/206 (83%), Gaps = 2/206 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG Q      +  +SSGSL LD+ALG+GG+P+GR
Sbjct: 1   MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERR--VSTISSGSLALDVALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPD
Sbjct: 59  IIEIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSP 214
           +I++SK I +FINQ+R K+GVMFG+ 
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNQ 204


>gi|6694809|gb|AAF25394.1|AF214747_1 RecA protein [Arthrobacter sp. 'SMCC ZAT005']
          Length = 218

 Score =  216 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 151/218 (69%), Positives = 183/218 (83%)

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           GIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD 
Sbjct: 1   GIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHALDPEYAAKLGVDT 60

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
             LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEIEGDMG+S  G+QARLM
Sbjct: 61  DALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIEGDMGDSHVGLQARLM 120

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           SQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ ++
Sbjct: 121 SQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQTL 180

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277
           K+     GN+T+ K+VKNKMA PFK  EFDI+YG+GIS
Sbjct: 181 KEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQGIS 218


>gi|162945245|gb|ABY20668.1| RecA [Lactobacillus brevis]
 gi|162945247|gb|ABY20669.1| RecA [Lactobacillus brevis]
 gi|162945249|gb|ABY20670.1| RecA [Lactobacillus brevis]
 gi|162945251|gb|ABY20671.1| RecA [Lactobacillus brevis]
 gi|162945253|gb|ABY20672.1| RecA [Lactobacillus brevis]
 gi|162945255|gb|ABY20673.1| RecA [Lactobacillus brevis]
 gi|162945257|gb|ABY20674.1| RecA [Lactobacillus brevis]
 gi|162945259|gb|ABY20675.1| RecA [Lactobacillus brevis]
 gi|162945261|gb|ABY20676.1| RecA [Lactobacillus brevis]
 gi|162945263|gb|ABY20677.1| RecA [Lactobacillus brevis]
 gi|162945265|gb|ABY20678.1| RecA [Lactobacillus brevis]
          Length = 208

 Score =  216 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 138/208 (66%), Positives = 177/208 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V SGSL LD+ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE+AL
Sbjct: 1   VPSGSLALDVALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA  LGV++ +LL+SQPDTGEQ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+M
Sbjct: 61  DPAYATALGVNIDDLLLSQPDTGEQGLQIADALISSGAIDIVVVDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G++  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+
Sbjct: 121 GDAHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           +VRL++RR   IKD   + GN+TR+KVV
Sbjct: 181 TVRLEVRRAEQIKDGTDVIGNRTRIKVV 208


>gi|323147033|gb|ADX32798.1| recombinase A [endophytic bacterium 11(2011)]
          Length = 223

 Score =  216 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 155/215 (72%), Positives = 189/215 (87%), Gaps = 1/215 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG++M+LG  G + E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 10  TAEKSKALAAALAQIEKQFGKGSVMRLG-AGEVVEDIQVVSTGSLGLDIALGVGGLPRGR 68

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPD
Sbjct: 69  VVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPD 128

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 129 TGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 188

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 189 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNAL 223


>gi|325973667|ref|YP_004250731.1| recombinase A [Mycoplasma suis str. Illinois]
 gi|325990110|ref|YP_004249809.1| RecA recombinase [Mycoplasma suis KI3806]
 gi|323575195|emb|CBZ40860.1| RecA recombinase [Mycoplasma suis]
 gi|323652269|gb|ADX98351.1| recombinase A [Mycoplasma suis str. Illinois]
          Length = 328

 Score =  216 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 117/289 (40%), Positives = 186/289 (64%), Gaps = 1/289 (0%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           I +  + + SGS  LD ALG  G+PKG+I+EI+G +SSGK+TLALH +A++QK G TC +
Sbjct: 32  IVDSKDSIPSGSYQLDKALGANGWPKGKIIEIFGSDSSGKSTLALHAVAEAQKQGKTCVY 91

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           +D E+ L+  +A K+GV   NL I  P +GE+  E+   L++    D+I++DSVAA+ P 
Sbjct: 92  IDLENTLNVSWAEKIGVQTNNLYICTPSSGEETFEVIGTLIQDQGADLIIVDSVAAMVPE 151

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
           AE++  + +   G+QARLMS+ LR + S + +S   ++FINQ+R +I   F    TTTGG
Sbjct: 152 AELDASLSDQSMGLQARLMSKGLRIIQSHLLKSHTTIIFINQIREQIKQTFFPSTTTTGG 211

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
            ALK+ +S+R+++R+  +IK  + I G  T++ +VKNK  +P  Q+   + +  G + F 
Sbjct: 212 RALKYAASIRVEVRKQEAIKQGEKIIGYLTKITIVKNKFNNPMIQIPLGLYFDAGFNKFF 271

Query: 281 ELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           ELI+L ++  I++K GAWF +K + LGQG  + K   +   E+ + +E 
Sbjct: 272 ELINLAIEKKIIEKRGAWFYYKDKNLGQGIFSLKEKFQS-EEMQKELEE 319


>gi|308171328|gb|ADO15983.1| RecA [Vibrio caribbenthicus]
          Length = 226

 Score =  216 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 154/225 (68%), Positives = 194/225 (86%)

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTG
Sbjct: 1   EIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 60

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 61  EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 120

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T
Sbjct: 121 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 180

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           R+KVVKNK+A+PFK+    IMYG+G +  GEL+DLGVK  +V+K+
Sbjct: 181 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKA 225


>gi|52141707|ref|YP_085121.1| recA protein (recombinase A), N-terminal region [Bacillus cereus
           E33L]
 gi|206972635|ref|ZP_03233577.1| RecA protein [Bacillus cereus AH1134]
 gi|217961201|ref|YP_002339769.1| protein RecA [Bacillus cereus AH187]
 gi|222097226|ref|YP_002531283.1| reca protein (recombinase a), n-terminal region [Bacillus cereus
           Q1]
 gi|228986924|ref|ZP_04147051.1| Endonuclease PI-MboI [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|229071278|ref|ZP_04204502.1| Endonuclease PI-MboI [Bacillus cereus F65185]
 gi|229081034|ref|ZP_04213546.1| Endonuclease PI-MboI [Bacillus cereus Rock4-2]
 gi|229092818|ref|ZP_04223956.1| Endonuclease PI-MboI [Bacillus cereus Rock3-42]
 gi|229140421|ref|ZP_04268976.1| Endonuclease PI-MboI [Bacillus cereus BDRD-ST26]
 gi|229180058|ref|ZP_04307402.1| Endonuclease PI-MboI [Bacillus cereus 172560W]
 gi|229197891|ref|ZP_04324607.1| Endonuclease PI-MboI [Bacillus cereus m1293]
 gi|51975176|gb|AAU16726.1| recA protein (recombinase A), N-terminal region [Bacillus cereus
           E33L]
 gi|206732448|gb|EDZ49628.1| RecA protein [Bacillus cereus AH1134]
 gi|217063049|gb|ACJ77299.1| protein RecA [Bacillus cereus AH187]
 gi|221241284|gb|ACM13994.1| recA protein (recombinase A), N-terminal region [Bacillus cereus
           Q1]
 gi|228585609|gb|EEK43711.1| Endonuclease PI-MboI [Bacillus cereus m1293]
 gi|228603267|gb|EEK60744.1| Endonuclease PI-MboI [Bacillus cereus 172560W]
 gi|228642982|gb|EEK99258.1| Endonuclease PI-MboI [Bacillus cereus BDRD-ST26]
 gi|228690616|gb|EEL44397.1| Endonuclease PI-MboI [Bacillus cereus Rock3-42]
 gi|228702264|gb|EEL54738.1| Endonuclease PI-MboI [Bacillus cereus Rock4-2]
 gi|228711899|gb|EEL63850.1| Endonuclease PI-MboI [Bacillus cereus F65185]
 gi|228772873|gb|EEM21312.1| Endonuclease PI-MboI [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 208

 Score =  216 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 134/206 (65%), Positives = 171/206 (83%), Gaps = 2/206 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG Q      +  VSSGSL LD+ALG+GG+P+GR
Sbjct: 1   MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERR--VSTVSSGSLALDVALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPD
Sbjct: 59  IIEIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSP 214
           +I++SK I +FINQ+R K+GVMFG+ 
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNQ 204


>gi|49481568|ref|YP_037841.1| recA protein (recombinase A), N-terminal region [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|165872411|ref|ZP_02217046.1| RecA protein [Bacillus anthracis str. A0488]
 gi|167635813|ref|ZP_02394122.1| RecA domain protein [Bacillus anthracis str. A0442]
 gi|167639755|ref|ZP_02398024.1| RecA protein [Bacillus anthracis str. A0193]
 gi|170687909|ref|ZP_02879123.1| RecA protein [Bacillus anthracis str. A0465]
 gi|170706839|ref|ZP_02897297.1| RecA protein [Bacillus anthracis str. A0389]
 gi|177652030|ref|ZP_02934576.1| RecA protein [Bacillus anthracis str. A0174]
 gi|190568394|ref|ZP_03021301.1| protein RecA [Bacillus anthracis Tsiankovskii-I]
 gi|196034060|ref|ZP_03101470.1| protein RecA [Bacillus cereus W]
 gi|196038224|ref|ZP_03105533.1| RecA protein [Bacillus cereus NVH0597-99]
 gi|196044482|ref|ZP_03111717.1| protein RecA [Bacillus cereus 03BB108]
 gi|218904908|ref|YP_002452742.1| RecA protein [Bacillus cereus AH820]
 gi|227813312|ref|YP_002813321.1| RecA protein [Bacillus anthracis str. CDC 684]
 gi|228916418|ref|ZP_04079985.1| Endonuclease PI-MboI [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228928830|ref|ZP_04091862.1| Endonuclease PI-MboI [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935077|ref|ZP_04097907.1| Endonuclease PI-MboI [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228947501|ref|ZP_04109791.1| Endonuclease PI-MboI [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|229123294|ref|ZP_04252498.1| Endonuclease PI-MboI [Bacillus cereus 95/8201]
 gi|229603497|ref|YP_002868022.1| protein RecA [Bacillus anthracis str. A0248]
 gi|254683511|ref|ZP_05147371.1| RecA protein [Bacillus anthracis str. CNEVA-9066]
 gi|254722032|ref|ZP_05183821.1| RecA protein [Bacillus anthracis str. A1055]
 gi|254739654|ref|ZP_05197348.1| RecA protein [Bacillus anthracis str. Kruger B]
 gi|254751050|ref|ZP_05203089.1| RecA protein [Bacillus anthracis str. Vollum]
 gi|254759368|ref|ZP_05211393.1| RecA protein [Bacillus anthracis str. Australia 94]
 gi|301055270|ref|YP_003793481.1| RecA protein, N-terminal region [Bacillus anthracis CI]
 gi|49333124|gb|AAT63770.1| recA protein (recombinase A), N-terminal region [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|164711849|gb|EDR17391.1| RecA protein [Bacillus anthracis str. A0488]
 gi|167512156|gb|EDR87533.1| RecA protein [Bacillus anthracis str. A0193]
 gi|167528770|gb|EDR91528.1| RecA domain protein [Bacillus anthracis str. A0442]
 gi|170128257|gb|EDS97126.1| RecA protein [Bacillus anthracis str. A0389]
 gi|170668225|gb|EDT18974.1| RecA protein [Bacillus anthracis str. A0465]
 gi|172082399|gb|EDT67464.1| RecA protein [Bacillus anthracis str. A0174]
 gi|190560398|gb|EDV14376.1| protein RecA [Bacillus anthracis Tsiankovskii-I]
 gi|195993134|gb|EDX57092.1| protein RecA [Bacillus cereus W]
 gi|196024517|gb|EDX63189.1| protein RecA [Bacillus cereus 03BB108]
 gi|196030632|gb|EDX69230.1| RecA protein [Bacillus cereus NVH0597-99]
 gi|218539602|gb|ACK92000.1| RecA protein [Bacillus cereus AH820]
 gi|227006992|gb|ACP16735.1| RecA protein [Bacillus anthracis str. CDC 684]
 gi|228660070|gb|EEL15706.1| Endonuclease PI-MboI [Bacillus cereus 95/8201]
 gi|228812021|gb|EEM58352.1| Endonuclease PI-MboI [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228824647|gb|EEM70449.1| Endonuclease PI-MboI [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228830637|gb|EEM76242.1| Endonuclease PI-MboI [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843221|gb|EEM88302.1| Endonuclease PI-MboI [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229267905|gb|ACQ49542.1| protein RecA [Bacillus anthracis str. A0248]
 gi|300377439|gb|ADK06343.1| RecA protein, N-terminal region [Bacillus cereus biovar anthracis
           str. CI]
 gi|324327674|gb|ADY22934.1| RecA protein, N-terminal protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 208

 Score =  216 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 134/206 (65%), Positives = 171/206 (83%), Gaps = 2/206 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG Q      +  VSSGSL LD+ALG+GG+P+GR
Sbjct: 1   MSDRQAALDMALKQIEKQFGKGSIMKLGEQAE--RKVSTVSSGSLALDVALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPD
Sbjct: 59  IIEIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSP 214
           +I++SK I +FINQ+R K+GVMFG+ 
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNQ 204


>gi|117675805|emb|CAL69173.1| recombinase A [Clavibacter michiganensis subsp. insidiosus]
          Length = 216

 Score =  216 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 150/216 (69%), Positives = 178/216 (82%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DMLV
Sbjct: 1   TLTLHAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG++D++VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  +++++  ++FIN
Sbjct: 61  RSGSIDLVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTQTTMIFIN 120

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA 
Sbjct: 121 QLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVGNRTRVKVVKNKMAP 180

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           PFKQ EFDI+YG GIS  G LID GV+  IV KSGA
Sbjct: 181 PFKQAEFDILYGTGISREGSLIDFGVEHEIVRKSGA 216


>gi|323147053|gb|ADX32808.1| recombinase A [endophytic bacterium 18(2011)]
          Length = 224

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 156/216 (72%), Positives = 190/216 (87%), Gaps = 1/216 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG++M+LG  G + E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 10  TAEKSKALAAALAQIEKQFGKGSVMRLG-AGEVVEDIQVVSTGSLGLDIALGVGGLPRGR 68

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPD
Sbjct: 69  VVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPD 128

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT 
Sbjct: 129 TGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 188

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 189 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALK 224


>gi|157493209|gb|ABV57970.1| RecA [Vibrio mimicus VM603]
          Length = 209

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 149/209 (71%), Positives = 183/209 (87%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHAL
Sbjct: 1   ISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+M
Sbjct: 61  DPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           SVRLDIRR G+IK+ + + GN+TR+KVVK
Sbjct: 181 SVRLDIRRTGAIKEGEEVVGNETRIKVVK 209


>gi|29652134|gb|AAO87728.1| RecA [Listeria monocytogenes]
 gi|29652234|gb|AAO87778.1| RecA [Listeria monocytogenes]
          Length = 199

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 134/201 (66%), Positives = 167/201 (83%), Gaps = 2/201 (0%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESS
Sbjct: 1   ALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESS 58

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI +
Sbjct: 59  GKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAE 118

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +
Sbjct: 119 ALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAI 178

Query: 199 FINQMRMKIGVMFGSPETTTG 219
           FINQ+R K+GVMFG+PE T G
Sbjct: 179 FINQIREKVGVMFGNPEITPG 199


>gi|291246094|gb|ADD85175.1| RecA [Borrelia recurrentis]
          Length = 242

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 144/240 (60%), Positives = 198/240 (82%), Gaps = 3/240 (1%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+++++G    + + +E + SG + LD A+GIGG+P+GR+VEI+GPESSGKT
Sbjct: 3   QIEKDFGKGSLIKMGE-SPVGKYLESIPSGFILLDEAIGIGGYPRGRVVEIFGPESSGKT 61

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QKTGG  AF+DAEHALD +YAR LGV++  L +SQPDTGEQAL+I + L+
Sbjct: 62  TLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQPDTGEQALDIAEYLI 121

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG VD+IV+DSVAAL P+AEI+G+MG++  G+QARLMS+ALRK+T+ +S+S   ++FIN
Sbjct: 122 RSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGLQARLMSKALRKITAILSKSNACIMFIN 181

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI--KDKDSITGNQTRVKVVKNKM 259
           Q+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V  +     D++ GN+ RVKVVKNK+
Sbjct: 182 QIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKVEQVIGSSSDNVIGNKIRVKVVKNKV 241


>gi|29652160|gb|AAO87741.1| RecA [Listeria monocytogenes]
          Length = 200

 Score =  215 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 134/201 (66%), Positives = 167/201 (83%), Gaps = 2/201 (0%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESS
Sbjct: 2   ALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESS 59

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI +
Sbjct: 60  GKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAE 119

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +
Sbjct: 120 ALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAI 179

Query: 199 FINQMRMKIGVMFGSPETTTG 219
           FINQ+R K+GVMFG+PE T G
Sbjct: 180 FINQIREKVGVMFGNPEITPG 200


>gi|254735820|ref|ZP_05193526.1| RecA protein [Bacillus anthracis str. Western North America
           USA6153]
          Length = 208

 Score =  215 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 134/206 (65%), Positives = 171/206 (83%), Gaps = 2/206 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG Q      +  VSSGSL LD+ALG+GG+P+GR
Sbjct: 1   MSDRQAALDMALXQIEKQFGKGSIMKLGEQAE--RKVSTVSSGSLALDVALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPD
Sbjct: 59  IIEIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSP 214
           +I++SK I +FINQ+R K+GVMFG+ 
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNQ 204


>gi|229086332|ref|ZP_04218509.1| Endonuclease PI-MboI [Bacillus cereus Rock3-44]
 gi|228696944|gb|EEL49752.1| Endonuclease PI-MboI [Bacillus cereus Rock3-44]
          Length = 208

 Score =  215 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 130/206 (63%), Positives = 170/206 (82%), Gaps = 2/206 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+  AL+ AL QI++ +GKG+IM+LG Q      I  + SGSL LD+ALG+GG+P+GR
Sbjct: 1   MSDRQAALDMALKQIEKQFGKGSIMKLGEQAE--RKISTIPSGSLALDVALGVGGYPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EIYGPESSGKTT++LH IA+ Q+ GG  AF+DAEHA+D +YA+KLGV++  LL+SQPD
Sbjct: 59  VIEIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPD 118

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQ LEI + LVRSGA+DIIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ 
Sbjct: 119 TGEQGLEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSG 178

Query: 189 SISRSKCILVFINQMRMKIGVMFGSP 214
           +I++SK I +FINQ+R K+GVMFG+ 
Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNQ 204


>gi|133711814|gb|ABO36632.1| putative recA protein [Solanum lycopersicum]
          Length = 395

 Score =  215 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 138/338 (40%), Positives = 209/338 (61%), Gaps = 6/338 (1%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           + + +    +K+ AL +ALSQ++  + K + + L  +        V+ +GSL LD+ALG+
Sbjct: 49  EIQDDTKTSEKASALHSALSQLEGDFCKESRLSL-QRFFGARRTPVIPTGSLRLDLALGL 107

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG PKGRIVEIYG E+SGKTTLALH I ++QK GG CA++D E+ ++   A  +GV+++N
Sbjct: 108 GGLPKGRIVEIYGQEASGKTTLALHVIREAQKLGGYCAYLDVENGMNPSLAEAIGVNVEN 167

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLISQPD+ E  L I + L +SG++D+IV+DSVAAL P+ EI+  + +S  G+Q+++M+Q
Sbjct: 168 LLISQPDSAENLLSIVNTLTKSGSMDVIVVDSVAALVPQLEIDATLCDSPKGLQSKIMTQ 227

Query: 182 ALRKLTSSISRSKCILVFINQMRMK----IGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           ALRK+  S+  S  +++FINQ+R      +       E T GGNAL FY+++RL   R  
Sbjct: 228 ALRKIHYSLGNSSTLIIFINQVRRSNKGLVRGSGCMDEVTCGGNALPFYAAIRLRTIRKQ 287

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
            +K +  ITG +  VKVVKNK+A    + E  I YG G     E+++L  +  +V K G 
Sbjct: 288 LLKTRHKITGLRICVKVVKNKLAPAATEAELSIQYGGGFCIEPEVLELACEHEVVLKEGG 347

Query: 298 WFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
            +   GQ L   R++++ +L  N +I   I   LR   
Sbjct: 348 SYFIDGQVL-NSRQDAEDYLASNGDILAKIVETLRDQL 384


>gi|198385745|gb|ACH86216.1| RecA [Rhizobium sp. T1473]
          Length = 188

 Score =  215 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 151/186 (81%), Positives = 173/186 (93%), Gaps = 1/186 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LEAALSQI+R +GKG+IM+LGS  S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGP
Sbjct: 1   LEAALSQIERSFGKGSIMKLGSNESVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           ITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+SK 
Sbjct: 120 ITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSKT 179

Query: 196 ILVFIN 201
           +++FIN
Sbjct: 180 MVIFIN 185


>gi|118767313|gb|ABL11492.1| RecA [Rhizobium sp. PEVF09]
 gi|225008770|gb|ACN78933.1| RecA [Rhizobium sp. PETP05]
          Length = 186

 Score =  215 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 149/185 (80%), Positives = 172/185 (92%), Gaps = 1/185 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSK 194
           IS+S 
Sbjct: 182 ISKSN 186


>gi|262064652|gb|ACY07560.1| recombinase A [Rhizobium leguminosarum]
 gi|262064660|gb|ACY07564.1| recombinase A [Rhizobium sp. RPVR32]
          Length = 185

 Score =  215 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 149/184 (80%), Positives = 172/184 (93%), Gaps = 1/184 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRS 193
           IS+S
Sbjct: 182 ISKS 185


>gi|306517563|emb|CBO93075.1| DNA recombinase A [Pantoea dispersa]
          Length = 220

 Score =  215 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 153/215 (71%), Positives = 186/215 (86%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           L LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA
Sbjct: 6   LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPVYA 65

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           +KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  
Sbjct: 66  KKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHM 125

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD
Sbjct: 126 GLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 185

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           IRR+G+IK+ D + G++TRVKVVKNK+A+PF + E
Sbjct: 186 IRRIGAIKEGDEVVGSETRVKVVKNKVAAPFSKAE 220


>gi|162945267|gb|ABY20679.1| RecA [Lactobacillus brevis DSM 20054]
          Length = 208

 Score =  215 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 138/208 (66%), Positives = 176/208 (84%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V SGSL LD+ALG+GG+P GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE+AL
Sbjct: 1   VPSGSLALDVALGVGGYPPGRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA  LGV++ +LL+SQPDTGEQ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+M
Sbjct: 61  DPAYATALGVNIDDLLLSQPDTGEQGLQIADALISSGAIDIVVVDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G++  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+
Sbjct: 121 GDAHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           +VRL++RR   IKD   + GN+TR+KVV
Sbjct: 181 TVRLEVRRAEQIKDGTDVIGNRTRIKVV 208


>gi|33087887|gb|AAP93074.1| recombination protein A [Yersinia pseudotuberculosis]
          Length = 191

 Score =  215 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 127/193 (65%), Positives = 157/193 (81%), Gaps = 2/193 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVE
Sbjct: 1   KQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVE 58

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGE
Sbjct: 59  IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGE 118

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ 
Sbjct: 119 QALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 178

Query: 192 RSKCILVFINQMR 204
            +  +L+FINQ+R
Sbjct: 179 NANTLLIFINQIR 191


>gi|89145046|emb|CAJ57531.1| recombinase A [Microbacterium saperdae]
          Length = 218

 Score =  215 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 156/218 (71%), Positives = 180/218 (82%)

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL LH IA +Q+ GG  AF+DAEHALD  YA KLGVD+  LL+SQPDTGE
Sbjct: 1   IYGPESSGKTTLTLHAIANAQRAGGIAAFIDAEHALDPDYAAKLGVDIDALLVSQPDTGE 60

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  ++
Sbjct: 61  QALEIADMLVRSGAIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLN 120

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++   ++FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TR
Sbjct: 121 QTNTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTR 180

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
           VKVVKNKMA PFKQ EFDI+YG GIS  G LID GV+ 
Sbjct: 181 VKVVKNKMAPPFKQAEFDILYGIGISREGSLIDFGVEH 218


>gi|225008768|gb|ACN78932.1| RecA [Rhizobium sp. PETP01]
          Length = 185

 Score =  215 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 150/184 (81%), Positives = 172/184 (93%), Gaps = 1/184 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRS 193
           IS+S
Sbjct: 182 ISKS 185


>gi|297523471|emb|CBH31143.1| recombination protein A [Mesorhizobium sp. LBER1]
          Length = 183

 Score =  215 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 141/184 (76%), Positives = 168/184 (91%), Gaps = 1/184 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           +AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPE
Sbjct: 1   DAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS  +
Sbjct: 120 CDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTM 179

Query: 197 LVFI 200
           ++FI
Sbjct: 180 VIFI 183


>gi|6694812|gb|AAF25397.1|AF214750_1 RecA protein [Arthrobacter sp. 'SMCC ZAT255']
          Length = 216

 Score =  215 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 149/216 (68%), Positives = 181/216 (83%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD
Sbjct: 1   LGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRPGGIAAFIDAEHALDPEYAAKLGVD 60

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
              LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIEGDMG+S  G+QARL
Sbjct: 61  TDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQARL 120

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ +
Sbjct: 121 MSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQT 180

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           +K+     GN+T+ K+VKNKMA PFK  EFDI+YG+
Sbjct: 181 LKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQ 216


>gi|110558993|gb|ABG75857.1| RecA [Rhizobium tropici]
          Length = 187

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 150/186 (80%), Positives = 171/186 (91%), Gaps = 1/186 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSKC 195
           IS+S  
Sbjct: 182 ISKSNT 187


>gi|213852305|ref|ZP_03381837.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
          Length = 215

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 117/213 (54%), Positives = 173/213 (81%)

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RM
Sbjct: 1   MDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 60

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++TRVKVVKNK+A+PFKQ
Sbjct: 61  KIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSETRVKVVKNKIAAPFKQ 120

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
            EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+ N+  +L+EN   A+
Sbjct: 121 AEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATTWLKENPATAK 180

Query: 326 NIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
            IE  +R+      ++       +++  A+ ++
Sbjct: 181 EIEKRVRELLLSNQNATPDFAVDDSEGVAETNE 213


>gi|66268066|gb|AAY43119.1| RecA [Vibrio cholerae]
          Length = 228

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 157/228 (68%), Positives = 195/228 (85%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+
Sbjct: 1   PMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLV 60

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+R
Sbjct: 61  SQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMR 120

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + 
Sbjct: 121 KLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEE 180

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           + GN+TR+KVVKNK+A+PFK+    IMYG+  +  GELIDLGVK  +V
Sbjct: 181 VVGNETRIKVVKNKIAAPFKEANTHIMYGQRFNREGELIDLGVKHKMV 228


>gi|117675795|emb|CAL69168.1| recombinase A [Curtobacterium citreum]
          Length = 216

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 147/216 (68%), Positives = 175/216 (81%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DML
Sbjct: 1   TTLTLHAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIADML 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSG++D+IV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL   +++++  ++FI
Sbjct: 61  VRSGSIDLIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGGLNQTQTTMIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++K      GN+TRVKVVKNKMA
Sbjct: 121 NQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKSGTDAVGNRTRVKVVKNKMA 180

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
            PFKQ EFDI+YG GIS  G L+D GV   IV KSG
Sbjct: 181 PPFKQAEFDILYGTGISREGSLLDFGVDHGIVKKSG 216


>gi|29652276|gb|AAO87799.1| RecA [Listeria monocytogenes]
          Length = 200

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 133/202 (65%), Positives = 167/202 (82%), Gaps = 2/202 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           + AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPE
Sbjct: 1   DQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPE 58

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI
Sbjct: 59  SSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEI 118

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I
Sbjct: 119 AEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTI 178

Query: 197 LVFINQMRMKIGVMFGSPETTT 218
            +FINQ+R K+GVMFG+PE T 
Sbjct: 179 AIFINQIREKVGVMFGNPEITP 200


>gi|325650568|emb|CBY89467.1| RecA protein [Rhizobium leguminosarum]
 gi|325650570|emb|CBY89468.1| RecA protein [Rhizobium leguminosarum]
 gi|325650574|emb|CBY89470.1| RecA protein [Rhizobium leguminosarum]
 gi|325650576|emb|CBY89471.1| RecA protein [Rhizobium leguminosarum]
 gi|325650578|emb|CBY89472.1| RecA protein [Rhizobium leguminosarum]
 gi|325650580|emb|CBY89473.1| RecA protein [Rhizobium leguminosarum]
 gi|325650582|emb|CBY89474.1| RecA protein [Rhizobium leguminosarum]
 gi|325650586|emb|CBY89476.1| RecA protein [Rhizobium leguminosarum]
 gi|325650588|emb|CBY89477.1| RecA protein [Rhizobium leguminosarum]
 gi|325650590|emb|CBY89478.1| RecA protein [Rhizobium leguminosarum]
 gi|325650596|emb|CBY89481.1| RecA protein [Rhizobium leguminosarum]
 gi|325650598|emb|CBY89482.1| RecA protein [Rhizobium leguminosarum]
 gi|325650600|emb|CBY89483.1| RecA protein [Rhizobium leguminosarum]
 gi|325650604|emb|CBY89485.1| RecA protein [Rhizobium leguminosarum]
 gi|325650606|emb|CBY89486.1| RecA protein [Rhizobium leguminosarum]
 gi|325650610|emb|CBY89488.1| RecA protein [Rhizobium leguminosarum]
 gi|325650612|emb|CBY89489.1| RecA protein [Rhizobium leguminosarum]
 gi|325650614|emb|CBY89490.1| RecA protein [Rhizobium leguminosarum]
 gi|325650616|emb|CBY89491.1| RecA protein [Rhizobium leguminosarum]
 gi|325650618|emb|CBY89492.1| RecA protein [Rhizobium leguminosarum]
 gi|325650620|emb|CBY89493.1| RecA protein [Rhizobium leguminosarum]
 gi|325650624|emb|CBY89495.1| RecA protein [Rhizobium leguminosarum]
 gi|325650626|emb|CBY89496.1| RecA protein [Rhizobium leguminosarum]
 gi|325650628|emb|CBY89497.1| RecA protein [Rhizobium leguminosarum]
 gi|325650630|emb|CBY89498.1| RecA protein [Rhizobium leguminosarum]
 gi|325650632|emb|CBY89499.1| RecA protein [Rhizobium leguminosarum]
 gi|325650636|emb|CBY89501.1| RecA protein [Rhizobium leguminosarum]
 gi|325650638|emb|CBY89502.1| RecA protein [Rhizobium leguminosarum]
 gi|325650640|emb|CBY89503.1| RecA protein [Rhizobium leguminosarum]
 gi|325650642|emb|CBY89504.1| RecA protein [Rhizobium leguminosarum]
 gi|325650644|emb|CBY89505.1| RecA protein [Rhizobium leguminosarum]
 gi|325650646|emb|CBY89506.1| RecA protein [Rhizobium leguminosarum]
 gi|325650648|emb|CBY89507.1| RecA protein [Rhizobium leguminosarum]
 gi|325650650|emb|CBY89508.1| RecA protein [Rhizobium leguminosarum]
 gi|325650652|emb|CBY89509.1| RecA protein [Rhizobium leguminosarum]
 gi|325650654|emb|CBY89510.1| RecA protein [Rhizobium leguminosarum]
 gi|325650656|emb|CBY89511.1| RecA protein [Rhizobium leguminosarum]
 gi|325650662|emb|CBY89514.1| RecA protein [Rhizobium leguminosarum]
 gi|325650666|emb|CBY89516.1| RecA protein [Rhizobium leguminosarum]
 gi|325650668|emb|CBY89517.1| RecA protein [Rhizobium leguminosarum]
 gi|325650670|emb|CBY89518.1| RecA protein [Rhizobium leguminosarum]
 gi|325650672|emb|CBY89519.1| RecA protein [Rhizobium leguminosarum]
 gi|325650674|emb|CBY89520.1| RecA protein [Rhizobium leguminosarum]
 gi|325650676|emb|CBY89521.1| RecA protein [Rhizobium leguminosarum]
 gi|325650678|emb|CBY89522.1| RecA protein [Rhizobium leguminosarum]
 gi|325650682|emb|CBY89524.1| RecA protein [Rhizobium leguminosarum]
 gi|325650684|emb|CBY89525.1| RecA protein [Rhizobium leguminosarum]
 gi|325650686|emb|CBY89526.1| RecA protein [Rhizobium leguminosarum]
 gi|325650688|emb|CBY89527.1| RecA protein [Rhizobium leguminosarum]
 gi|325650690|emb|CBY89528.1| RecA protein [Rhizobium leguminosarum]
 gi|325650692|emb|CBY89529.1| RecA protein [Rhizobium leguminosarum]
 gi|325650694|emb|CBY89530.1| RecA protein [Rhizobium leguminosarum]
 gi|325650696|emb|CBY89531.1| RecA protein [Rhizobium leguminosarum]
 gi|325650698|emb|CBY89532.1| RecA protein [Rhizobium leguminosarum]
 gi|325650700|emb|CBY89533.1| RecA protein [Rhizobium leguminosarum]
 gi|325650702|emb|CBY89534.1| RecA protein [Rhizobium leguminosarum]
 gi|325650706|emb|CBY89536.1| RecA protein [Rhizobium leguminosarum]
 gi|325650708|emb|CBY89537.1| RecA protein [Rhizobium leguminosarum]
 gi|325650710|emb|CBY89538.1| RecA protein [Rhizobium leguminosarum]
 gi|325650712|emb|CBY89539.1| RecA protein [Rhizobium leguminosarum]
 gi|325650714|emb|CBY89540.1| RecA protein [Rhizobium leguminosarum]
 gi|325650716|emb|CBY89541.1| RecA protein [Rhizobium leguminosarum]
 gi|325650718|emb|CBY89542.1| RecA protein [Rhizobium leguminosarum]
 gi|325650720|emb|CBY89543.1| RecA protein [Rhizobium leguminosarum]
 gi|325650722|emb|CBY89544.1| RecA protein [Rhizobium leguminosarum]
 gi|325650724|emb|CBY89545.1| RecA protein [Rhizobium leguminosarum]
 gi|325650726|emb|CBY89546.1| RecA protein [Rhizobium leguminosarum]
 gi|325650730|emb|CBY89548.1| RecA protein [Rhizobium leguminosarum]
 gi|325650732|emb|CBY89549.1| RecA protein [Rhizobium leguminosarum]
 gi|325650734|emb|CBY89550.1| RecA protein [Rhizobium leguminosarum]
 gi|325650736|emb|CBY89551.1| RecA protein [Rhizobium leguminosarum]
 gi|325650738|emb|CBY89552.1| RecA protein [Rhizobium leguminosarum]
 gi|325650740|emb|CBY89553.1| RecA protein [Rhizobium leguminosarum]
 gi|325650742|emb|CBY89554.1| RecA protein [Rhizobium leguminosarum]
 gi|325650744|emb|CBY89555.1| RecA protein [Rhizobium leguminosarum]
 gi|325650746|emb|CBY89556.1| RecA protein [Rhizobium leguminosarum]
 gi|325650748|emb|CBY89557.1| RecA protein [Rhizobium leguminosarum]
 gi|325650750|emb|CBY89558.1| RecA protein [Rhizobium leguminosarum]
 gi|325650752|emb|CBY89559.1| RecA protein [Rhizobium leguminosarum]
 gi|325650754|emb|CBY89560.1| RecA protein [Rhizobium leguminosarum]
 gi|325650758|emb|CBY89562.1| RecA protein [Rhizobium leguminosarum]
 gi|325650760|emb|CBY89563.1| RecA protein [Rhizobium leguminosarum]
 gi|325650762|emb|CBY89564.1| RecA protein [Rhizobium leguminosarum]
 gi|325650764|emb|CBY89565.1| RecA protein [Rhizobium leguminosarum]
 gi|325650766|emb|CBY89566.1| RecA protein [Rhizobium leguminosarum]
 gi|325650768|emb|CBY89567.1| RecA protein [Rhizobium leguminosarum]
 gi|325650770|emb|CBY89568.1| RecA protein [Rhizobium leguminosarum]
 gi|325650772|emb|CBY89569.1| RecA protein [Rhizobium leguminosarum]
 gi|325650774|emb|CBY89570.1| RecA protein [Rhizobium leguminosarum]
 gi|325650778|emb|CBY89572.1| RecA protein [Rhizobium leguminosarum]
 gi|325650782|emb|CBY89574.1| RecA protein [Rhizobium leguminosarum]
 gi|325650784|emb|CBY89575.1| RecA protein [Rhizobium leguminosarum]
 gi|325650786|emb|CBY89576.1| RecA protein [Rhizobium leguminosarum]
 gi|325650788|emb|CBY89577.1| RecA protein [Rhizobium leguminosarum]
 gi|325650790|emb|CBY89578.1| RecA protein [Rhizobium leguminosarum]
 gi|325650792|emb|CBY89579.1| RecA protein [Rhizobium leguminosarum]
 gi|325650794|emb|CBY89580.1| RecA protein [Rhizobium leguminosarum]
 gi|325650796|emb|CBY89581.1| RecA protein [Rhizobium leguminosarum]
 gi|325650798|emb|CBY89582.1| RecA protein [Rhizobium leguminosarum]
 gi|325650802|emb|CBY89584.1| RecA protein [Rhizobium leguminosarum]
 gi|325650804|emb|CBY89585.1| RecA protein [Rhizobium leguminosarum]
 gi|325650806|emb|CBY89586.1| RecA protein [Rhizobium leguminosarum]
 gi|325650808|emb|CBY89587.1| RecA protein [Rhizobium leguminosarum]
 gi|325650810|emb|CBY89588.1| RecA protein [Rhizobium leguminosarum]
 gi|325650812|emb|CBY89589.1| RecA protein [Rhizobium leguminosarum]
 gi|325650814|emb|CBY89590.1| RecA protein [Rhizobium leguminosarum]
 gi|325650820|emb|CBY89593.1| RecA protein [Rhizobium leguminosarum]
 gi|325650832|emb|CBY89599.1| RecA protein [Rhizobium leguminosarum]
 gi|325650834|emb|CBY89600.1| RecA protein [Rhizobium leguminosarum]
 gi|325650836|emb|CBY89601.1| RecA protein [Rhizobium leguminosarum]
 gi|325650840|emb|CBY89603.1| RecA protein [Rhizobium leguminosarum]
 gi|325650844|emb|CBY89605.1| RecA protein [Rhizobium leguminosarum]
 gi|325650850|emb|CBY89608.1| RecA protein [Rhizobium leguminosarum]
 gi|325650852|emb|CBY89609.1| RecA protein [Rhizobium leguminosarum]
 gi|325650854|emb|CBY89610.1| RecA protein [Rhizobium leguminosarum]
 gi|325650856|emb|CBY89611.1| RecA protein [Rhizobium leguminosarum]
 gi|325650858|emb|CBY89612.1| RecA protein [Rhizobium leguminosarum]
 gi|325650860|emb|CBY89613.1| RecA protein [Rhizobium leguminosarum]
 gi|325650866|emb|CBY89616.1| RecA protein [Rhizobium leguminosarum]
 gi|325650868|emb|CBY89617.1| RecA protein [Rhizobium leguminosarum]
 gi|325650870|emb|CBY89618.1| RecA protein [Rhizobium leguminosarum]
 gi|325650872|emb|CBY89619.1| RecA protein [Rhizobium leguminosarum]
 gi|325650874|emb|CBY89620.1| RecA protein [Rhizobium leguminosarum]
 gi|325650878|emb|CBY89622.1| RecA protein [Rhizobium leguminosarum]
 gi|325650882|emb|CBY89624.1| RecA protein [Rhizobium leguminosarum]
 gi|325650884|emb|CBY89625.1| RecA protein [Rhizobium leguminosarum]
 gi|325650886|emb|CBY89626.1| RecA protein [Rhizobium leguminosarum]
 gi|325650890|emb|CBY89628.1| RecA protein [Rhizobium leguminosarum]
 gi|325650892|emb|CBY89629.1| RecA protein [Rhizobium leguminosarum]
 gi|325650894|emb|CBY89630.1| RecA protein [Rhizobium leguminosarum]
 gi|325650912|emb|CBY89639.1| RecA protein [Rhizobium sp. R-45889=2430]
 gi|325651221|emb|CBY89432.1| RecA protein [Rhizobium leguminosarum]
 gi|325651223|emb|CBY89433.1| RecA protein [Rhizobium leguminosarum]
 gi|325651225|emb|CBY89434.1| RecA protein [Rhizobium leguminosarum]
 gi|325651227|emb|CBY89435.1| RecA protein [Rhizobium leguminosarum]
 gi|325651231|emb|CBY89437.1| RecA protein [Rhizobium leguminosarum]
 gi|325651233|emb|CBY89438.1| RecA protein [Rhizobium leguminosarum]
 gi|325651235|emb|CBY89439.1| RecA protein [Rhizobium leguminosarum]
 gi|325651237|emb|CBY89440.1| RecA protein [Rhizobium leguminosarum]
 gi|325651239|emb|CBY89441.1| RecA protein [Rhizobium leguminosarum]
 gi|325651241|emb|CBY89442.1| RecA protein [Rhizobium leguminosarum]
 gi|325651243|emb|CBY89443.1| RecA protein [Rhizobium leguminosarum]
 gi|325651245|emb|CBY89444.1| RecA protein [Rhizobium leguminosarum]
 gi|325651247|emb|CBY89445.1| RecA protein [Rhizobium leguminosarum]
 gi|325651251|emb|CBY89447.1| RecA protein [Rhizobium leguminosarum]
 gi|325651253|emb|CBY89448.1| RecA protein [Rhizobium leguminosarum]
 gi|325651255|emb|CBY89449.1| RecA protein [Rhizobium leguminosarum]
 gi|325651257|emb|CBY89450.1| RecA protein [Rhizobium leguminosarum]
 gi|325651259|emb|CBY89451.1| RecA protein [Rhizobium leguminosarum]
 gi|325651261|emb|CBY89452.1| RecA protein [Rhizobium leguminosarum]
 gi|325651263|emb|CBY89453.1| RecA protein [Rhizobium leguminosarum]
 gi|325651265|emb|CBY89454.1| RecA protein [Rhizobium leguminosarum]
 gi|325651267|emb|CBY89455.1| RecA protein [Rhizobium leguminosarum]
 gi|325651271|emb|CBY89457.1| RecA protein [Rhizobium leguminosarum]
 gi|325651277|emb|CBY89460.1| RecA protein [Rhizobium leguminosarum]
 gi|325651279|emb|CBY89461.1| RecA protein [Rhizobium leguminosarum]
 gi|325651281|emb|CBY89462.1| RecA protein [Rhizobium leguminosarum]
 gi|325651283|emb|CBY89463.1| RecA protein [Rhizobium leguminosarum]
 gi|325651285|emb|CBY89464.1| RecA protein [Rhizobium leguminosarum]
 gi|325651287|emb|CBY89465.1| RecA protein [Rhizobium leguminosarum]
 gi|325651289|emb|CBY89466.1| RecA protein [Rhizobium leguminosarum]
          Length = 183

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 147/184 (79%), Positives = 170/184 (92%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S  
Sbjct: 180 KSNT 183


>gi|198385739|gb|ACH86213.1| RecA [Phyllobacterium sp. T1018]
          Length = 186

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 148/185 (80%), Positives = 169/185 (91%), Gaps = 1/185 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE V +GSL LDIALG+GG PKGRI
Sbjct: 3   VDKTKALDAALSQIERAFGKGSIMRLGRNEQVVE-IETVPTGSLSLDIALGVGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSK 194
           ISRS 
Sbjct: 182 ISRSN 186


>gi|325650572|emb|CBY89469.1| RecA protein [Rhizobium leguminosarum]
 gi|325650584|emb|CBY89475.1| RecA protein [Rhizobium leguminosarum]
 gi|325650592|emb|CBY89479.1| RecA protein [Rhizobium leguminosarum]
 gi|325650594|emb|CBY89480.1| RecA protein [Rhizobium leguminosarum]
 gi|325650602|emb|CBY89484.1| RecA protein [Rhizobium leguminosarum]
 gi|325650608|emb|CBY89487.1| RecA protein [Rhizobium leguminosarum]
 gi|325650728|emb|CBY89547.1| RecA protein [Rhizobium leguminosarum]
 gi|325650800|emb|CBY89583.1| RecA protein [Rhizobium leguminosarum]
 gi|325650816|emb|CBY89591.1| RecA protein [Rhizobium leguminosarum]
 gi|325650822|emb|CBY89594.1| RecA protein [Rhizobium leguminosarum]
 gi|325650828|emb|CBY89597.1| RecA protein [Rhizobium leguminosarum]
 gi|325650830|emb|CBY89598.1| RecA protein [Rhizobium leguminosarum]
 gi|325650838|emb|CBY89602.1| RecA protein [Rhizobium leguminosarum]
 gi|325650842|emb|CBY89604.1| RecA protein [Rhizobium leguminosarum]
 gi|325650846|emb|CBY89606.1| RecA protein [Rhizobium leguminosarum]
 gi|325650848|emb|CBY89607.1| RecA protein [Rhizobium leguminosarum]
 gi|325650862|emb|CBY89614.1| RecA protein [Rhizobium leguminosarum]
 gi|325650864|emb|CBY89615.1| RecA protein [Rhizobium leguminosarum]
 gi|325650876|emb|CBY89621.1| RecA protein [Rhizobium leguminosarum]
 gi|325650880|emb|CBY89623.1| RecA protein [Rhizobium leguminosarum]
 gi|325650888|emb|CBY89627.1| RecA protein [Rhizobium leguminosarum]
 gi|325651249|emb|CBY89446.1| RecA protein [Rhizobium leguminosarum]
 gi|325651269|emb|CBY89456.1| RecA protein [Rhizobium leguminosarum]
 gi|325651273|emb|CBY89458.1| RecA protein [Rhizobium leguminosarum]
 gi|325651275|emb|CBY89459.1| RecA protein [Rhizobium leguminosarum]
          Length = 183

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 148/184 (80%), Positives = 170/184 (92%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S  
Sbjct: 180 KSNT 183


>gi|223366145|gb|ACM88608.1| RecA [Rhizobium sp. CVIII14]
          Length = 186

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 148/185 (80%), Positives = 170/185 (91%), Gaps = 1/185 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P
Sbjct: 2   EXKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLP 60

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 61  RGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 120

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 121 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 180

Query: 186 LTSSI 190
           LT+SI
Sbjct: 181 LTASI 185


>gi|325650658|emb|CBY89512.1| RecA protein [Rhizobium leguminosarum]
          Length = 183

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 148/183 (80%), Positives = 171/183 (93%), Gaps = 1/183 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 2   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 61  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 121 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 180

Query: 190 ISR 192
           IS+
Sbjct: 181 ISK 183


>gi|290795155|gb|ADD64592.1| RecA recombinase [Vibrio ordalii]
          Length = 204

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 145/206 (70%), Positives = 177/206 (85%), Gaps = 2/206 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSGA+D
Sbjct: 59  IAAAQRVGKTCAFIDAEHALDPIYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAID 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VIVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDI 233
           GVMFG+PETTTGGNALKFY+SVRLDI
Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDI 204


>gi|110558997|gb|ABG75859.1| RecA [Agrobacterium rhizogenes]
          Length = 188

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 151/186 (81%), Positives = 171/186 (91%), Gaps = 1/186 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 4   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 63  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 123 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 182

Query: 190 ISRSKC 195
           IS+S  
Sbjct: 183 ISKSNT 188


>gi|262064664|gb|ACY07566.1| recombinase A [Rhizobium sp. LCS0401]
          Length = 190

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 149/189 (78%), Positives = 172/189 (91%), Gaps = 1/189 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P
Sbjct: 3   EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLP 61

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 62  RGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 121

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 122 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 181

Query: 186 LTSSISRSK 194
           L +SIS+S 
Sbjct: 182 LXASISKSN 190


>gi|262272835|gb|ACY40637.1| RecA [Leptotrichia sp. HKU24]
          Length = 239

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 157/239 (65%), Positives = 198/239 (82%), Gaps = 3/239 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+GSL LDIALGIGG P+GRIVEIYG ESSGKTTLALH IA++QK GGT AF+DAEHA
Sbjct: 1   AISTGSLNLDIALGIGGVPRGRIVEIYGAESSGKTTLALHIIAEAQKAGGTVAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YA+ LGV++  LLISQPDTGEQALEI+DMLVRSGA+D+IV+DSVAAL P+AEIEG+
Sbjct: 61  LDPVYAKALGVNIDELLISQPDTGEQALEISDMLVRSGAMDVIVVDSVAALVPKAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM---FGSPETTTGGNAL 223
           MG+   G+QARLMS+ALRKLT SIS+S  +++FINQ+R KIG      G   TT+GG AL
Sbjct: 121 MGDQQMGLQARLMSKALRKLTGSISKSDTVMIFINQIREKIGGFSFVPGVQTTTSGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           KF+S+VR++++RVGS+K  D + G++  VKV KNK+A PFK+ +F++MYG GIS  GE+
Sbjct: 181 KFFSTVRMEVKRVGSVKQGDDVIGSEVVVKVTKNKVAPPFKEAKFNVMYGTGISKIGEV 239


>gi|6694853|gb|AAF25438.1|AF214791_1 RecA protein [Arthrobacter uratoxydans]
          Length = 205

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 144/205 (70%), Positives = 173/205 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAE
Sbjct: 1   IEVIPTGSVALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVASAQRNGGIAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA+KLGVD   LL+SQPDTGEQALEI DMLV SGA+DIIVIDSVAAL PRAEIE
Sbjct: 61  HALDPEYAKKLGVDTDALLVSQPDTGEQALEIMDMLVGSGALDIIVIDSVAALVPRAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRK+T  +S SK   +FINQ+R KIGV FGSPETTTGG ALK
Sbjct: 121 GEMGDSHVGLQARLMSQALRKITGRLSASKTTAIFINQLREKIGVFFGSPETTTGGKALK 180

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQ 249
           FY+SVR+DIRR+ ++K+  +  GN+
Sbjct: 181 FYASVRIDIRRIETLKEGTNPVGNR 205


>gi|225008774|gb|ACN78935.1| RecA [Rhizobium sp. HETP05]
          Length = 188

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 149/185 (80%), Positives = 170/185 (91%), Gaps = 1/185 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P
Sbjct: 4   EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLP 62

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 63  RGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 122

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 123 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 182

Query: 186 LTSSI 190
           LT+SI
Sbjct: 183 LTASI 187


>gi|255040349|gb|ACT99987.1| recombinase A [Lactobacillus sp. BL304]
          Length = 212

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 130/212 (61%), Positives = 173/212 (81%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           +   I  + SGSL LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A+
Sbjct: 1   VDTQISTIPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAY 60

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           +DAE+A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PR
Sbjct: 61  IDAENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVPR 120

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
           AEI+GDMG+S  G+QARLMSQALRKL+ +IS++K I VFINQ+R K+GVMFG+PETT GG
Sbjct: 121 AEIDGDMGDSHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGVMFGNPETTPGG 180

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
            ALKFYS++RL++RR   IK    + GN+ ++
Sbjct: 181 RALKFYSTIRLEVRRAEQIKQGSDVIGNRVKL 212


>gi|255040343|gb|ACT99984.1| recombinase A [Lactobacillus sp. BL301]
          Length = 210

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 130/210 (61%), Positives = 171/210 (81%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           +   I  + SGSL LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A+
Sbjct: 1   VDTQISTIPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAY 60

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           +DAE+A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PR
Sbjct: 61  IDAENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVPR 120

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
           AEI+GDMG+S  G+QARLMSQALRKL+ +IS++K I VFINQ+R K+GVMFG+PETT GG
Sbjct: 121 AEIDGDMGDSHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGVMFGNPETTPGG 180

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            ALKFYS++RL++RR   IK    + GN+ 
Sbjct: 181 RALKFYSTIRLEVRRAEQIKQGSDVIGNRV 210


>gi|154184300|gb|ABS70974.1| RecA [Daeguia caeni]
          Length = 183

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 144/184 (78%), Positives = 169/184 (91%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K+KAL+AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG PKGRI+E
Sbjct: 1   KTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG++LPG+QARLMSQALRKLT+SI+
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDALPGLQARLMSQALRKLTASIN 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|29652132|gb|AAO87727.1| RecA [Listeria monocytogenes]
          Length = 197

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 132/199 (66%), Positives = 166/199 (83%), Gaps = 2/199 (1%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGP
Sbjct: 1   LDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK 
Sbjct: 119 IAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKT 178

Query: 196 ILVFINQMRMKIGVMFGSP 214
           I +FINQ+R K+GVMFG+P
Sbjct: 179 IAIFINQIREKVGVMFGNP 197


>gi|255040339|gb|ACT99982.1| recombinase A [Lactobacillus gasseri]
 gi|255040341|gb|ACT99983.1| recombinase A [Lactobacillus sp. BL263]
 gi|255040347|gb|ACT99986.1| recombinase A [Lactobacillus sp. BL303]
 gi|255040351|gb|ACT99988.1| recombinase A [Lactobacillus johnsonii]
          Length = 220

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 130/210 (61%), Positives = 171/210 (81%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99
            +   I  + SGSL LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A
Sbjct: 1   KVDTQISTIPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAA 60

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           ++DAE+A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL P
Sbjct: 61  YIDAENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVP 120

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           RAEI+GDMG+S  G+QARLMSQALRKL+ +IS++K I VFINQ+R K+GVMFG+PETT G
Sbjct: 121 RAEIDGDMGDSHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGVMFGNPETTPG 180

Query: 220 GNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           G ALKFYS++RL++RR   IK    + GN+
Sbjct: 181 GRALKFYSTIRLEVRRAEQIKQGSDVIGNR 210


>gi|156902068|gb|ABU96827.1| RecA protein [Vibrio cholerae]
          Length = 221

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 153/221 (69%), Positives = 190/221 (85%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  L
Sbjct: 1   GLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDEL 60

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           L+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA
Sbjct: 61  LVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQA 120

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           +RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ 
Sbjct: 121 MRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEG 180

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           + + GN+TR+KVVKNK+A+PFK+    IMYG+G +  GELI
Sbjct: 181 EEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELI 221


>gi|110002969|emb|CAJ57771.1| recombinase A [Rhizobium huautlense]
          Length = 183

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 153/184 (83%), Positives = 170/184 (92%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  +I E IE VS+GSL LDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           RS C
Sbjct: 180 RSNC 183


>gi|255040355|gb|ACT99990.1| recombinase A [Lactobacillus johnsonii]
          Length = 220

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 129/210 (61%), Positives = 170/210 (80%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99
            +   I  + SGSL LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A
Sbjct: 1   KVDTQISTIPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAA 60

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           ++DAE+A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL P
Sbjct: 61  YIDAENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVP 120

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           RAEI+GDMG+S  G+QARLMSQALRKL+ +IS++K I VFINQ+R K+ VMFG+PETT G
Sbjct: 121 RAEIDGDMGDSHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVRVMFGNPETTPG 180

Query: 220 GNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           G ALKFYS++RL++RR   IK    + GN+
Sbjct: 181 GRALKFYSTIRLEVRRAEQIKQGSDVIGNR 210


>gi|297523479|emb|CBH31147.1| recombination protein A [Mesorhizobium sp. LKU6]
 gi|297523481|emb|CBH31148.1| recombination protein A [Mesorhizobium sp. LAR5]
          Length = 183

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 143/183 (78%), Positives = 167/183 (91%), Gaps = 1/183 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG+IM+LG+   I E IE V +GSLGLDIALG+GG P+GRI+EIYGPES
Sbjct: 2   AALSQIERAFGKGSIMRLGANEKIVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS  ++
Sbjct: 121 DTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTMV 180

Query: 198 VFI 200
           +FI
Sbjct: 181 IFI 183


>gi|209413805|emb|CAP78948.1| recombinase A [Leuconostoc palmae]
          Length = 236

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 153/236 (64%), Positives = 189/236 (80%), Gaps = 2/236 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G++M LG    +   +E   SGS+ LD+ALG+GG+PKGRI+EIYGPESSGKTT+ALH +A
Sbjct: 1   GSVMVLGDNAQV--QVETYPSGSVKLDVALGVGGYPKGRIIEIYGPESSGKTTMALHAVA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT A++DAE+ALD  YA  LGV    LL+SQPDTGEQ LEI D LV+SGAVDII
Sbjct: 59  EVQKAGGTAAYIDAENALDVKYAEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDII 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL  +++R+  I +FINQ+R KIGV
Sbjct: 119 VVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           M G+PETT GG ALKFYS++RL++R+   I+D   ITGN T+VKVVKNK+A PFKQ
Sbjct: 179 MLGNPETTPGGRALKFYSTIRLEVRKSTQIEDGTDITGNLTKVKVVKNKVAPPFKQ 234


>gi|255040353|gb|ACT99989.1| recombinase A [Lactobacillus johnsonii]
          Length = 220

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 130/210 (61%), Positives = 170/210 (80%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99
            +   I  + SGSL LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A
Sbjct: 1   KVDTQISTIPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAA 60

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           ++DAE+A D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL P
Sbjct: 61  YIDAENATDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVP 120

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           RAEI+GDMG+S  G+QARLMSQALRKL+ +IS++K I VFINQ+R K+GVMFG+PETT G
Sbjct: 121 RAEIDGDMGDSHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGVMFGNPETTPG 180

Query: 220 GNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           G ALKFYS++RL++RR   IK    + GN+
Sbjct: 181 GRALKFYSTIRLEVRRAEQIKQGSDVIGNR 210


>gi|118767325|gb|ABL11498.1| RecA [Rhizobium sp. PEPSM18]
          Length = 186

 Score =  213 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 154/185 (83%), Positives = 172/185 (92%), Gaps = 1/185 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSLGLDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLGLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPGMQARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 181

Query: 190 ISRSK 194
           IS+S 
Sbjct: 182 ISKSN 186


>gi|124295574|gb|ABN04185.1| RecA [Bacillus sp. EA1]
          Length = 213

 Score =  213 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 150/211 (71%), Positives = 183/211 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            SGSL LDIALG+GG+P+GRIVEIYGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD
Sbjct: 1   PSGSLALDIALGVGGYPRGRIVEIYGPESSGKTTVALHAIAEVQKRGGQAAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYA+KLGV++  LL+SQPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEIEG+MG
Sbjct: 61  PIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           ++  G+QARLMSQALRKL+ +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFY+S
Sbjct: 121 DAHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           VRL++RR   IK  + + GN+T++KVVKNK+
Sbjct: 181 VRLEVRRAEQIKQGNDMVGNKTKIKVVKNKV 211


>gi|262064650|gb|ACY07559.1| recombinase A [Rhizobium leguminosarum]
          Length = 185

 Score =  213 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 148/185 (80%), Positives = 170/185 (91%), Gaps = 1/185 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P
Sbjct: 1   EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLP 59

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 60  RGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 119

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 120 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 179

Query: 186 LTSSI 190
           LT+SI
Sbjct: 180 LTASI 184


>gi|29652158|gb|AAO87740.1| RecA [Listeria monocytogenes]
          Length = 199

 Score =  213 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 133/201 (66%), Positives = 167/201 (83%), Gaps = 2/201 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           + AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPE
Sbjct: 1   DQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPE 58

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI
Sbjct: 59  SSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEI 118

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I
Sbjct: 119 AEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTI 178

Query: 197 LVFINQMRMKIGVMFGSPETT 217
            +FINQ+R K+GVMFG+PE T
Sbjct: 179 AIFINQIREKVGVMFGNPEIT 199


>gi|47095349|ref|ZP_00232959.1| recA protein [Listeria monocytogenes str. 1/2a F6854]
 gi|47016170|gb|EAL07093.1| recA protein [Listeria monocytogenes str. 1/2a F6854]
          Length = 211

 Score =  213 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 110/205 (53%), Positives = 156/205 (76%), Gaps = 2/205 (0%)

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+R K+
Sbjct: 1   MLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKV 60

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PE T GG ALKFYS+VRL++RR   +K    + GN+T++KVVKNK+A PF+  E
Sbjct: 61  GVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKTKIKVVKNKVAPPFRIAE 120

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
            DIMYGEGIS  GEL+D+  +  +++KSG+W+S+K +R+GQGREN+K +L+E+ +I + I
Sbjct: 121 VDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGRENAKQYLKEHTDIRDEI 180

Query: 328 ESLLRQNAGLVADSLLQEPAINTKD 352
              +R+   +  D   +EP    ++
Sbjct: 181 SKRVREEYEI--DGSSKEPLDEKEE 203


>gi|117675793|emb|CAL69167.1| recombinase A [Curtobacterium flaccumfaciens pv. betae]
          Length = 217

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 147/217 (67%), Positives = 176/217 (81%)

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTL +H IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDT EQALEI D
Sbjct: 1   GKTTLTIHAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTAEQALEIAD 60

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           MLVRSG++D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL   +++++  ++
Sbjct: 61  MLVRSGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGGLNQTQTTMI 120

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           FINQ+R KIGV FGSPETT+GG ALKFY+SVRLDIRR+ ++K      GN+TRVKVVKNK
Sbjct: 121 FINQLREKIGVFFGSPETTSGGKALKFYASVRLDIRRIETLKSGTDAVGNRTRVKVVKNK 180

Query: 259 MASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           MA PFKQ EFDI+YG GIS  G L+D GV   IV KS
Sbjct: 181 MAPPFKQAEFDILYGVGISREGSLLDFGVDHGIVKKS 217


>gi|325650916|emb|CBY89641.1| RecA protein [Rhizobium sp. R-46040=B1009]
 gi|325650920|emb|CBY89643.1| RecA protein [Rhizobium sp. R-45990=B580T1]
 gi|325650922|emb|CBY89644.1| RecA protein [Rhizobium sp. R-45992=B589T1]
          Length = 183

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 151/184 (82%), Positives = 171/184 (92%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E +E +S+GSL LDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETISTGSLSLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVDI+V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDILVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +SKC
Sbjct: 180 KSKC 183


>gi|110349888|emb|CAL15006.1| recombinase A [Rhizobium cellulosilyticum]
 gi|110349890|emb|CAL15007.1| recombinase A [Rhizobium cellulosilyticum]
          Length = 183

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 151/184 (82%), Positives = 169/184 (91%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  SI E IE VS+GSL LDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNDSIVE-IETVSTGSLSLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S  
Sbjct: 180 KSNT 183


>gi|29652049|gb|AAO87687.1| RecA [Listeria monocytogenes]
 gi|29652068|gb|AAO87696.1| RecA [Listeria monocytogenes]
          Length = 193

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 128/194 (65%), Positives = 161/194 (82%), Gaps = 2/194 (1%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YG
Sbjct: 2   ALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQAL
Sbjct: 60  PESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK
Sbjct: 120 EIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSK 179

Query: 195 CILVFINQMRMKIG 208
            I +FINQ+R K+G
Sbjct: 180 TIAIFINQIREKVG 193


>gi|29652190|gb|AAO87756.1| RecA [Listeria monocytogenes]
          Length = 201

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 135/203 (66%), Positives = 168/203 (82%), Gaps = 2/203 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
            QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGK
Sbjct: 1   KQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGK 58

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + L
Sbjct: 59  TTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEAL 118

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FI
Sbjct: 119 VRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFI 178

Query: 201 NQMRMKIGVMFGSPETTTGGNAL 223
           NQ+R K+GVMFG+PE T GG AL
Sbjct: 179 NQIREKVGVMFGNPEITPGGRAL 201


>gi|29652072|gb|AAO87698.1| RecA [Listeria monocytogenes]
          Length = 192

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 128/194 (65%), Positives = 161/194 (82%), Gaps = 2/194 (1%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YG
Sbjct: 1   ALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYG 58

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQAL
Sbjct: 59  PESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQAL 118

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK
Sbjct: 119 EIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSK 178

Query: 195 CILVFINQMRMKIG 208
            I +FINQ+R K+G
Sbjct: 179 TIAIFINQIREKVG 192


>gi|325650900|emb|CBY89633.1| RecA protein [Rhizobium sp. R-45761=1599]
          Length = 183

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 153/184 (83%), Positives = 170/184 (92%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  SI E IE VS+GSL LDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNDSIVE-IETVSTGSLSLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEGDMG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +SK 
Sbjct: 180 KSKT 183


>gi|219870182|gb|ACL50296.1| RecA protein [Pseudomonas chlororaphis subsp. aurantiaca]
          Length = 222

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 156/222 (70%), Positives = 190/222 (85%)

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEIT
Sbjct: 1   SGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEIT 60

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           DMLVRS A+D+IVIDSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C++
Sbjct: 61  DMLVRSNAIDVIVIDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLV 120

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           +FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVK+VKN
Sbjct: 121 IFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKIVKN 180

Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299
           K+A PF+Q EF I+YG+GI   GE+IDLGV    ++KSGAW+
Sbjct: 181 KVAPPFRQAEFQILYGKGIYLNGEIIDLGVLHGFLEKSGAWY 222


>gi|87303736|ref|ZP_01086496.1| RecA DNA recombination protein [Synechococcus sp. WH 5701]
 gi|87281729|gb|EAQ73701.1| RecA DNA recombination protein [Synechococcus sp. WH 5701]
          Length = 249

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 128/241 (53%), Positives = 172/241 (71%)

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           ++SQPDTGE ALEI D LVRS AVDI+VIDSVAALTPR+EIEG+MG+   G QARLMSQA
Sbjct: 1   MVSQPDTGEMALEIVDQLVRSAAVDIVVIDSVAALTPRSEIEGEMGDVSVGSQARLMSQA 60

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           +RK+T +I +S C ++F+NQ+R+KIGVM+G+PETTTGGNALKFY+SVRLDIRR+ ++K  
Sbjct: 61  MRKITGNIGKSGCTVIFLNQLRLKIGVMYGNPETTTGGNALKFYASVRLDIRRIQTLKKG 120

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
               G + +VKV KNK+A PF+  EFDI++G GIS  G L+DL  +  +V + GAW+S++
Sbjct: 121 TEEFGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVVRKGAWYSYE 180

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           G  +GQGR+N+ +++ +N E A  IE+L+RQ      +             A       V
Sbjct: 181 GDNIGQGRDNTIVWMEQNPEAATTIETLVRQKLSEGTEVTANTVKSLAPAGAKAASDKPV 240

Query: 363 E 363
           E
Sbjct: 241 E 241


>gi|90193547|gb|ABD92366.1| RecA [Rhizobium lusitanum]
          Length = 186

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 151/185 (81%), Positives = 171/185 (92%), Gaps = 1/185 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 ISRSK 194
           IS+S 
Sbjct: 182 ISKSN 186


>gi|209571813|gb|ACI62759.1| recombinase A [Bradyrhizobium yuanmingense]
 gi|242263490|gb|ACS89041.1| recombinase A [Bradyrhizobium yuanmingense]
 gi|242263492|gb|ACS89042.1| recombinase A [Bradyrhizobium yuanmingense]
 gi|242263494|gb|ACS89043.1| recombinase A [Bradyrhizobium yuanmingense]
 gi|242263498|gb|ACS89045.1| recombinase A [Bradyrhizobium yuanmingense]
 gi|242263500|gb|ACS89046.1| recombinase A [Bradyrhizobium yuanmingense]
 gi|242263534|gb|ACS89063.1| recombinase A [Bradyrhizobium sp. SR43]
          Length = 186

 Score =  212 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 138/187 (73%), Positives = 165/187 (88%), Gaps = 1/187 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AALSQI+R +GKG++M+LG        IE VSSGSLGLDIALGIGG PKGRIVEIYG
Sbjct: 1   ALAAALSQIERQFGKGSVMKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S 
Sbjct: 120 EICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSN 179

Query: 195 CILVFIN 201
            +++FIN
Sbjct: 180 TMVIFIN 186


>gi|110002989|emb|CAJ57781.1| recombinase A [Sinorhizobium saheli]
 gi|110002991|emb|CAJ57782.1| recombinase A [Sinorhizobium saheli]
          Length = 183

 Score =  212 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 149/184 (80%), Positives = 171/184 (92%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG++LPGMQARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDNLPGMQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|325650896|emb|CBY89631.1| RecA protein [Agrobacterium tumefaciens]
          Length = 183

 Score =  212 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 150/184 (81%), Positives = 170/184 (92%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +SKC
Sbjct: 180 KSKC 183


>gi|126567364|dbj|BAF48339.1| RecA protein [Amorphomonas oryzae]
          Length = 190

 Score =  212 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 154/188 (81%), Positives = 172/188 (91%), Gaps = 1/188 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LG+  S+ E IE VS+GSL LDIALGIGG P
Sbjct: 1   EDKSVDKSKALEAALSQIERNFGKGSIMKLGANESVVE-IETVSTGSLSLDIALGIGGLP 59

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 60  KGRIVEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 119

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG++LPGMQARLMSQALRK
Sbjct: 120 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDNLPGMQARLMSQALRK 179

Query: 186 LTSSISRS 193
           LT+SISRS
Sbjct: 180 LTASISRS 187


>gi|317449032|emb|CBX31917.1| RecA protein [Rhizobium tibeticum]
 gi|317449034|emb|CBX31918.1| RecA protein [Rhizobium tibeticum]
          Length = 183

 Score =  212 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 152/184 (82%), Positives = 171/184 (92%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  S+ E IE VS+GSLGLDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNESVVE-IETVSTGSLGLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +SK 
Sbjct: 180 KSKT 183


>gi|325651217|emb|CBY89430.1| RecA protein [Rhizobium cellulosilyticum]
          Length = 183

 Score =  212 bits (538), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 150/184 (81%), Positives = 169/184 (91%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  +I E IE VS+GSL LDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S  
Sbjct: 180 KSNT 183


>gi|225008772|gb|ACN78934.1| RecA [Rhizobium sp. HETP03]
          Length = 186

 Score =  212 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 147/184 (79%), Positives = 168/184 (91%), Gaps = 1/184 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P
Sbjct: 4   EXKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLP 62

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 63  RGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 122

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+ LPG+QARLMSQALRK
Sbjct: 123 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDXLPGLQARLMSQALRK 182

Query: 186 LTSS 189
           LT+S
Sbjct: 183 LTAS 186


>gi|29652011|gb|AAO87668.1| RecA [Listeria monocytogenes]
          Length = 199

 Score =  212 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 133/201 (66%), Positives = 166/201 (82%), Gaps = 2/201 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
            QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGK
Sbjct: 1   KQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGK 58

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + L
Sbjct: 59  TTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEAL 118

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FI
Sbjct: 119 VRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFI 178

Query: 201 NQMRMKIGVMFGSPETTTGGN 221
           NQ+R K+GVMFG+PE T GG 
Sbjct: 179 NQIREKVGVMFGNPEITPGGR 199


>gi|307343153|emb|CBJ18106.1| recombinase A [Micromonospora echinaurantiaca]
          Length = 206

 Score =  212 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 139/199 (69%), Positives = 167/199 (83%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDALLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVRLDIRRVGSIKDKDSIT 246
           SVRLD+RR+ S+KD   + 
Sbjct: 181 SVRLDVRRIESLKDGTDVV 199


>gi|75758395|ref|ZP_00738518.1| RecA protein [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|74494121|gb|EAO57214.1| RecA protein [Bacillus thuringiensis serovar israelensis ATCC
           35646]
          Length = 362

 Score =  212 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 123/333 (36%), Positives = 184/333 (55%), Gaps = 19/333 (5%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           ++E  +S I +  G+  I   G   +    I++ SSGSL +D+ALG GG   GRI+E +G
Sbjct: 2   SIEKLMSTINKQLGEDTI---GYSVNTGPTIKLFSSGSLTMDLALG-GGVANGRIIEYFG 57

Query: 75  PESSGKTTLA-LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
              +GKTTL  LH     +K  G  AF+D EHA++   A++ GVDL  L+   P T E A
Sbjct: 58  NSMAGKTTLMFLHIAEVQRKNEGYVAFIDMEHAMNKELAQQYGVDLDKLIYVNPKTAENA 117

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ++I D L+RSG V +I +DSV+A+ P   +E    +   G+ AR MS  ++KLT      
Sbjct: 118 VDIADSLIRSGEVRLIAVDSVSAMVPTKIVESSAEQQTMGLLARFMSTTMQKLTGIAYEH 177

Query: 194 KCILVFINQMRMKI--GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
            C + FINQ+R KI      G+P TT+GG AL FY+S R+ ++    IKD + I G+  +
Sbjct: 178 DCTVGFINQIREKIGGFSPAGTPTTTSGGRALPFYASQRIQVKMGEYIKDGNDIIGHWVK 237

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG---- 307
           +KVVKNK+A PFK+  F ++YG G+    E+  + + A  V K+G W     +  G    
Sbjct: 238 IKVVKNKIAIPFKEAAFPLIYGHGVDRIDEVAQVAILAGFVQKNGGWCRIIDEETGEIRQ 297

Query: 308 --------QGRENSKIFLRENIEIAENIESLLR 332
                    G+     FL E+ ++A  +E+ +R
Sbjct: 298 HKGIELKFNGQAKLVAFLHEHKDLAAELEAKIR 330


>gi|117675799|emb|CAL69170.1| recombinase A [Curtobacterium herbarum]
          Length = 217

 Score =  212 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 147/217 (67%), Positives = 177/217 (81%)

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTL +H IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDT EQALEI DM
Sbjct: 1   KTTLTIHAIANAQRNGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTAEQALEIADM 60

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           LVRSG++D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL   +++++  ++F
Sbjct: 61  LVRSGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGGLNQTQTTMIF 120

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           INQ+R KIGV FGSPETT+GG ALKFY+SVRLDIRR+ ++K      GN+TRVKVVKNKM
Sbjct: 121 INQLREKIGVFFGSPETTSGGKALKFYASVRLDIRRIETLKTGTEAVGNRTRVKVVKNKM 180

Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
           A PFKQ EFDI+YG GIS  G L+D GV  +IV KSG
Sbjct: 181 APPFKQAEFDILYGVGISREGSLLDFGVDHNIVKKSG 217


>gi|117675801|emb|CAL69171.1| recombinase A [Clavibacter michiganensis subsp. tessellarius]
 gi|117675803|emb|CAL69172.1| recombinase A [Clavibacter michiganensis subsp. sepedonicus]
          Length = 214

 Score =  212 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 148/214 (69%), Positives = 176/214 (82%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DMLV
Sbjct: 1   TLTLHAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG++D++VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  +++++  ++FIN
Sbjct: 61  RSGSIDLVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTQTTMIFIN 120

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA 
Sbjct: 121 QLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVGNRTRVKVVKNKMAP 180

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           PFKQ EFDI+YG GIS  G LID GV+  IV KS
Sbjct: 181 PFKQAEFDILYGTGISREGSLIDFGVEHEIVRKS 214


>gi|290795157|gb|ADD64593.1| RecA recombinase [Vibrio splendidus]
          Length = 204

 Score =  212 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 144/206 (69%), Positives = 177/206 (85%), Gaps = 2/206 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   ++ +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  I
Sbjct: 1   KGSIMRLGDNRTM--DVKTISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           + +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D+
Sbjct: 59  SAAQKVGKTCAFIDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG
Sbjct: 119 LVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIG 178

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIR 234
           VMFG+PETTTGGNALKFY+SVRLDIR
Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIR 204


>gi|325650898|emb|CBY89632.1| RecA protein [Rhizobium sp. R-45724=1436]
 gi|325650906|emb|CBY89636.1| RecA protein [Rhizobium sp. R-45829=2041]
          Length = 183

 Score =  212 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 151/184 (82%), Positives = 169/184 (91%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  +I E IE VS+GSL LDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S  
Sbjct: 180 KSNT 183


>gi|325651215|emb|CBY89429.1| RecA protein [Rhizobium alamii]
          Length = 183

 Score =  212 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 151/184 (82%), Positives = 169/184 (91%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  SI E IE VS+GSL LDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNESIVE-IETVSTGSLSLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S  
Sbjct: 180 KSNT 183


>gi|29652162|gb|AAO87742.1| RecA [Listeria monocytogenes]
          Length = 198

 Score =  212 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 133/200 (66%), Positives = 166/200 (83%), Gaps = 2/200 (1%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
            QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGK
Sbjct: 1   KQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGK 58

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + L
Sbjct: 59  TTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEAL 118

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FI
Sbjct: 119 VRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFI 178

Query: 201 NQMRMKIGVMFGSPETTTGG 220
           NQ+R K+GVMFG+PE T GG
Sbjct: 179 NQIREKVGVMFGNPEITPGG 198


>gi|83308050|emb|CAJ13510.1| RecA protein [Mesorhizobium thiogangeticum]
          Length = 181

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 142/182 (78%), Positives = 167/182 (91%), Gaps = 1/182 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKAL+AALSQI+R +GKG+IM+LG    + E I  VS+GSLGLDIALG+GG P+GRI+E
Sbjct: 1   KSKALDAALSQIERAFGKGSIMRLGQNEQVVE-IGTVSTGSLGLDIALGVGGLPRGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  VYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG++LPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDALPGLQARLMSQALRKLTASIS 179

Query: 192 RS 193
           RS
Sbjct: 180 RS 181


>gi|29652164|gb|AAO87743.1| RecA [Listeria monocytogenes]
          Length = 197

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 132/199 (66%), Positives = 166/199 (83%), Gaps = 2/199 (1%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           + AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPE
Sbjct: 1   DQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPE 58

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI
Sbjct: 59  SSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEI 118

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I
Sbjct: 119 AEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTI 178

Query: 197 LVFINQMRMKIGVMFGSPE 215
            +FINQ+R K+GVMFG+PE
Sbjct: 179 AIFINQIREKVGVMFGNPE 197


>gi|297523483|emb|CBH31149.1| recombination protein A [Mesorhizobium sp. LAR8]
          Length = 182

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 142/182 (78%), Positives = 166/182 (91%), Gaps = 1/182 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG+IM+LG+   I E IE V +GSLGLDIALG+GG P+GRI+EIYGPES
Sbjct: 2   AALSQIERAFGKGSIMRLGANEKIVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS  ++
Sbjct: 121 DTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTMV 180

Query: 198 VF 199
           +F
Sbjct: 181 IF 182


>gi|198385741|gb|ACH86214.1| RecA [Rhizobium sp. T1155]
 gi|198385743|gb|ACH86215.1| RecA [Rhizobium sp. T1470]
          Length = 183

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 151/181 (83%), Positives = 169/181 (93%), Gaps = 1/181 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  S+ E IE VS+GSLGLDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNESVVE-IETVSTGSLGLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181

Query: 190 I 190
           I
Sbjct: 182 I 182


>gi|325650908|emb|CBY89637.1| RecA protein [Rhizobium sp. R-45835=2079T1]
 gi|325650924|emb|CBY89645.1| RecA protein [Rhizobium sp. R-46165=t228]
 gi|325650930|emb|CBY89648.1| RecA protein [Rhizobium sp. R-46235=t497]
          Length = 183

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 150/184 (81%), Positives = 169/184 (91%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S  
Sbjct: 180 KSNT 183


>gi|29652188|gb|AAO87755.1| RecA [Listeria monocytogenes]
          Length = 197

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 132/199 (66%), Positives = 165/199 (82%), Gaps = 2/199 (1%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
            QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGK
Sbjct: 1   KQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGK 58

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + L
Sbjct: 59  TTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEAL 118

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FI
Sbjct: 119 VRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFI 178

Query: 201 NQMRMKIGVMFGSPETTTG 219
           NQ+R K+GVMFG+PE T G
Sbjct: 179 NQIREKVGVMFGNPEITPG 197


>gi|223366143|gb|ACM88607.1| RecA [Rhizobium sp. CVIII4]
          Length = 183

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 146/181 (80%), Positives = 168/181 (92%), Gaps = 1/181 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKL +S
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLXAS 181

Query: 190 I 190
           I
Sbjct: 182 I 182


>gi|6694833|gb|AAF25418.1|AF214771_1 RecA protein [Arthrobacter sp. 'SMCC ZAT054']
          Length = 214

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 148/214 (69%), Positives = 179/214 (83%)

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           GIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD 
Sbjct: 1   GIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHALDPEYAAKLGVDT 60

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
             LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEIEGDMG+S  G+QARLM
Sbjct: 61  DALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIEGDMGDSHVGLQARLM 120

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           SQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ ++
Sbjct: 121 SQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQTL 180

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           K+     GN+T+ K+VKNKMA PFK  EFDI+YG
Sbjct: 181 KEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYG 214


>gi|325650824|emb|CBY89595.1| RecA protein [Rhizobium leguminosarum]
          Length = 180

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 147/181 (81%), Positives = 169/181 (93%), Gaps = 1/181 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 R 192
           +
Sbjct: 180 K 180


>gi|325650664|emb|CBY89515.1| RecA protein [Rhizobium leguminosarum]
          Length = 180

 Score =  211 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 146/181 (80%), Positives = 169/181 (93%), Gaps = 1/181 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 R 192
           +
Sbjct: 180 K 180


>gi|226201195|gb|ACO37590.1| recA protein [Aeromonas sanarellii]
          Length = 199

 Score =  211 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 151/199 (75%), Positives = 176/199 (88%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L  IA++Q+ G TCAFVDA
Sbjct: 1   DIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQRKGKTCAFVDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEI
Sbjct: 61  EHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 121 EGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNAL 180

Query: 224 KFYSSVRLDIRRVGSIKDK 242
           KFY+SVRLDIRR G+IK+ 
Sbjct: 181 KFYASVRLDIRRTGAIKEG 199


>gi|225008764|gb|ACN78930.1| RecA [Rhizobium sp. HUTP01]
          Length = 184

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 147/185 (79%), Positives = 169/185 (91%), Gaps = 1/185 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P
Sbjct: 1   EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLP 59

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 60  RGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 119

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 120 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 179

Query: 186 LTSSI 190
           L +SI
Sbjct: 180 LXASI 184


>gi|157382975|gb|ABV48916.1| recombinase A [Rhizobium sp. BICC 651R]
          Length = 194

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 146/182 (80%), Positives = 166/182 (91%), Gaps = 1/182 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 8   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 66

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDT
Sbjct: 67  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDT 126

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 127 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 186

Query: 190 IS 191
             
Sbjct: 187 FP 188


>gi|29652212|gb|AAO87767.1| RecA [Listeria monocytogenes]
          Length = 196

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 132/198 (66%), Positives = 165/198 (83%), Gaps = 2/198 (1%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKT
Sbjct: 1   QIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKT 58

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LV
Sbjct: 59  TVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALV 118

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FIN
Sbjct: 119 RSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFIN 178

Query: 202 QMRMKIGVMFGSPETTTG 219
           Q+R K+GVMFG+PE T G
Sbjct: 179 QIREKVGVMFGNPEITPG 196


>gi|146286275|gb|ABL11493.2| RecA [Rhizobium sp. PEVF10]
          Length = 181

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 146/182 (80%), Positives = 169/182 (92%), Gaps = 1/182 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EI
Sbjct: 1   SKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+
Sbjct: 120 ALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISK 179

Query: 193 SK 194
           S 
Sbjct: 180 SN 181


>gi|29652080|gb|AAO87702.1| RecA [Listeria monocytogenes]
          Length = 196

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 131/198 (66%), Positives = 165/198 (83%), Gaps = 2/198 (1%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           + AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPE
Sbjct: 1   DQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPE 58

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI
Sbjct: 59  SSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEI 118

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I
Sbjct: 119 AEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTI 178

Query: 197 LVFINQMRMKIGVMFGSP 214
            +FINQ+R K+GVMFG+P
Sbjct: 179 AIFINQIREKVGVMFGNP 196


>gi|187235576|gb|ACD02001.1| putative recombinase A [Clostridium septicum]
          Length = 205

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 142/205 (69%), Positives = 174/205 (84%)

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            A++DAEHALD  YAR LGVD ++L++SQPDTGEQALEI + LVRSGA+D+IVIDSVAAL
Sbjct: 1   AAYIDAEHALDPSYARNLGVDTESLIVSQPDTGEQALEIAEALVRSGAIDVIVIDSVAAL 60

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
            PRAEIEG+MG+S  G+QARLMSQALRKLT +I ++ C+ +FINQ+R K+GVMFG+PETT
Sbjct: 61  VPRAEIEGEMGDSHVGLQARLMSQALRKLTGTIQKTGCVAIFINQLREKVGVMFGNPETT 120

Query: 218 TGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277
           TGG ALKFY+SVRLD+RR+ SIK  + I GN+TRVKV+KNK+A PFKQ EFDIMY EGIS
Sbjct: 121 TGGRALKFYASVRLDVRRIDSIKQGEGIVGNRTRVKVMKNKVAPPFKQAEFDIMYNEGIS 180

Query: 278 FFGELIDLGVKASIVDKSGAWFSFK 302
             G ++D+GVK  I+ KSGAWFS+ 
Sbjct: 181 RTGNIVDVGVKEGIIQKSGAWFSYG 205


>gi|33087833|gb|AAP93047.1| recombination protein A [Yersinia intermedia]
          Length = 188

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 124/190 (65%), Positives = 154/190 (81%), Gaps = 2/190 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 1   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 58

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 59  EIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 118

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 119 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 178

Query: 191 SRSKCILVFI 200
             +  +L+FI
Sbjct: 179 KNANTLLIFI 188


>gi|33087789|gb|AAP93025.1| recombination protein A [Yersinia bercovieri]
          Length = 188

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 124/190 (65%), Positives = 154/190 (81%), Gaps = 2/190 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 1   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 58

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 59  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 118

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 119 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 178

Query: 191 SRSKCILVFI 200
             +  +L+FI
Sbjct: 179 KNANTLLIFI 188


>gi|325650780|emb|CBY89573.1| RecA protein [Rhizobium leguminosarum]
          Length = 183

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 146/184 (79%), Positives = 169/184 (91%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKA EAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+E
Sbjct: 1   KSKAXEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S  
Sbjct: 180 KSNT 183


>gi|29652210|gb|AAO87766.1| RecA [Listeria monocytogenes]
          Length = 197

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 132/197 (67%), Positives = 165/197 (83%), Gaps = 2/197 (1%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESS
Sbjct: 1   ALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESS 58

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI +
Sbjct: 59  GKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAE 118

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +
Sbjct: 119 ALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAI 178

Query: 199 FINQMRMKIGVMFGSPE 215
           FINQ+R K+GVMFG+PE
Sbjct: 179 FINQIREKVGVMFGNPE 195


>gi|325650660|emb|CBY89513.1| RecA protein [Rhizobium leguminosarum]
          Length = 183

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 145/184 (78%), Positives = 168/184 (91%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALE ALSQI+  +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+E
Sbjct: 1   KSKALEXALSQIEXSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S  
Sbjct: 180 KSNT 183


>gi|325650910|emb|CBY89638.1| RecA protein [Rhizobium sp. R-45860=2192]
 gi|325650914|emb|CBY89640.1| RecA protein [Rhizobium sp. R-46039=B1004]
          Length = 183

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 152/184 (82%), Positives = 169/184 (91%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG+  SI E IE VS+GSL LDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGANESIVE-IETVSTGSLSLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S  
Sbjct: 180 KSNT 183


>gi|226201185|gb|ACO37585.1| recA protein [Aeromonas taiwanensis]
          Length = 199

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 151/199 (75%), Positives = 176/199 (88%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L  IA++QK G TCAFVDA
Sbjct: 1   DIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEI
Sbjct: 61  EHALDPVYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 121 EGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNAL 180

Query: 224 KFYSSVRLDIRRVGSIKDK 242
           KFY+SVRLDIRR G+IK+ 
Sbjct: 181 KFYASVRLDIRRTGAIKEG 199


>gi|110003017|emb|CAJ57795.1| recombinase A [Sinorhizobium terangae]
 gi|110003019|emb|CAJ57796.1| recombinase A [Sinorhizobium terangae]
 gi|110003021|emb|CAJ57797.1| recombinase A [Sinorhizobium terangae]
          Length = 183

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 150/184 (81%), Positives = 170/184 (92%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|30266949|gb|AAP21583.1| recombinase A [Erwinia psidii]
          Length = 207

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 149/207 (71%), Positives = 178/207 (85%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD 
Sbjct: 1   TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRKGKTCAFIDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+
Sbjct: 61  VYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SV
Sbjct: 121 SHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVK 256
           RLDIRR+G IK  D + G++TRVKVVK
Sbjct: 181 RLDIRRIGPIKKGDEVVGSETRVKVVK 207


>gi|29651965|gb|AAO87645.1| RecA [Listeria monocytogenes]
          Length = 191

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 127/193 (65%), Positives = 160/193 (82%), Gaps = 2/193 (1%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L+ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGP
Sbjct: 1   LDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK 
Sbjct: 119 IAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKT 178

Query: 196 ILVFINQMRMKIG 208
           I +FINQ+R K+G
Sbjct: 179 IAIFINQIREKVG 191


>gi|118767311|gb|ABL11491.1| RecA [Rhizobium sp. PEVF08]
 gi|225008776|gb|ACN78936.1| RecA [Rhizobium sp. ARTP01]
          Length = 180

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 145/181 (80%), Positives = 168/181 (92%), Gaps = 1/181 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIY
Sbjct: 1   KALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQA
Sbjct: 60  GPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 LEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 179

Query: 194 K 194
            
Sbjct: 180 N 180


>gi|331029409|gb|AEC49854.1| recombinase A [Bradyrhizobium sp. SEMIA 696]
          Length = 190

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 137/190 (72%), Positives = 165/190 (86%), Gaps = 1/190 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DKSKAL AALSQI+R +GKG++M+LG        +E VSSGSLGLDIALG+GG P
Sbjct: 2   EGSSMDKSKALSAALSQIERQFGKGSVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLP 60

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLIS
Sbjct: 61  KGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLIS 120

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRK
Sbjct: 121 QPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRK 180

Query: 186 LTSSISRSKC 195
           LT+SI++S  
Sbjct: 181 LTASINKSHT 190


>gi|308233965|ref|ZP_07664702.1| RecA protein [Atopobium vaginae DSM 15829]
          Length = 242

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 146/242 (60%), Positives = 182/242 (75%)

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           +GVD+  +LISQPDTGEQALEI DMLVRSGA+D++V+DSVAAL PRAEIEG++GE+  G+
Sbjct: 1   IGVDIDEVLISQPDTGEQALEICDMLVRSGAIDVVVVDSVAALVPRAEIEGEIGETTVGL 60

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
           QARLMSQALRKL  S+S+SK   +FINQ+R KIGVMFG+PETT GG ALKF+SSVRLDIR
Sbjct: 61  QARLMSQALRKLAGSLSKSKTTCIFINQLREKIGVMFGNPETTPGGRALKFFSSVRLDIR 120

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK 294
           RV ++K  + + GN+ RVKVVKNK+A PFKQ EFDIMYG GIS  G ++D+  +  IV K
Sbjct: 121 RVETLKKNNDMIGNRVRVKVVKNKVAPPFKQAEFDIMYGTGISKEGTVLDMAAELGIVQK 180

Query: 295 SGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
           SGAWF++  QRLGQGRE  K FL +N ++ E + + ++   GL        PA      A
Sbjct: 181 SGAWFNYGEQRLGQGREAVKEFLVQNPDLLEELTNKVKVACGLEFADDDVAPAPVEDAPA 240

Query: 355 DK 356
            K
Sbjct: 241 KK 242


>gi|110003001|emb|CAJ57787.1| recombinase A [Sinorhizobium fredii]
 gi|110003003|emb|CAJ57788.1| recombinase A [Sinorhizobium fredii]
 gi|110003005|emb|CAJ57789.1| recombinase A [Sinorhizobium fredii]
 gi|110003009|emb|CAJ57791.1| recombinase A [Sinorhizobium xinjiangense]
 gi|110003011|emb|CAJ57792.1| recombinase A [Sinorhizobium xinjiangense]
          Length = 183

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 152/184 (82%), Positives = 170/184 (92%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|228904767|ref|ZP_04068821.1| hypothetical protein bthur0014_58910 [Bacillus thuringiensis IBL
           4222]
 gi|228854781|gb|EEM99385.1| hypothetical protein bthur0014_58910 [Bacillus thuringiensis IBL
           4222]
          Length = 356

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 122/328 (37%), Positives = 181/328 (55%), Gaps = 19/328 (5%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           +S I +  G+  I   G   +    I++ SSGSL +D+ALG GG   GRI+E +G   +G
Sbjct: 1   MSTINKQLGEDTI---GYSVNTGPTIKLFSSGSLTMDLALG-GGVANGRIIEYFGNSMAG 56

Query: 80  KTTLA-LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           KTTL  LH     +K  G  AF+D EHA++   A++ GVDL  L+   P T E A++I D
Sbjct: 57  KTTLMFLHIAEVQRKNEGYVAFIDMEHAMNKELAQQYGVDLDKLIYVNPKTAENAVDIAD 116

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            L+RSG V +I +DSV+A+ P   +E    +   G+ AR MS  ++KLT       C + 
Sbjct: 117 SLIRSGEVRLIAVDSVSAMVPTKIVESSAEQQTMGLLARFMSTTMQKLTGIAYEHDCTVG 176

Query: 199 FINQMRMKI--GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           FINQ+R KI      G+P TT+GG AL FY+S R+ ++    IKD + I G+  ++KVVK
Sbjct: 177 FINQIREKIGGFSPAGTPTTTSGGRALPFYASQRIQVKMGEYIKDGNDIIGHWVKIKVVK 236

Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG--------- 307
           NK+A PFK+  F ++YG G+    E+  + + A  V K+G W     +  G         
Sbjct: 237 NKIAIPFKEAAFPLIYGHGVDRIDEVAQVAILAGFVQKNGGWCRIIDEETGEIRQHKGIE 296

Query: 308 ---QGRENSKIFLRENIEIAENIESLLR 332
               G+     FL E+ ++A  +E+ +R
Sbjct: 297 LKFNGQAKLVAFLHEHKDLAAELEAKIR 324


>gi|325650926|emb|CBY89646.1| RecA protein [Rhizobium sp. R-46166=t229]
 gi|325650932|emb|CBY89649.1| RecA protein [Rhizobium sp. R-45802=1831]
          Length = 183

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 147/184 (79%), Positives = 166/184 (90%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG+   I E +E VS+GSL LDIALGIGG PKGR++E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRVIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGVCAFVDAEHALDPVYARKLGVDLHNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSGA+D++V+DSVAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT SIS
Sbjct: 120 QALEIVDTLVRSGAIDVLVVDSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKLTGSIS 179

Query: 192 RSKC 195
           RS C
Sbjct: 180 RSNC 183


>gi|270160513|gb|ACZ63222.1| RecA [Aeromonas rivuli]
 gi|270160523|gb|ACZ63227.1| RecA [Aeromonas rivuli]
          Length = 199

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 151/199 (75%), Positives = 177/199 (88%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSL LD+ALGIGG P GR+VEIYGPESSGKTTL L  IA++QK G TCAFVDA
Sbjct: 1   DIEAISTGSLSLDVALGIGGLPCGRVVEIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEI
Sbjct: 61  EHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 121 EGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNAL 180

Query: 224 KFYSSVRLDIRRVGSIKDK 242
           KFY+SVRLDIRR+G+IK+ 
Sbjct: 181 KFYASVRLDIRRIGAIKEG 199


>gi|223366151|gb|ACM88611.1| RecA [Rhizobium sp. MVP07]
          Length = 179

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 144/179 (80%), Positives = 166/179 (92%), Gaps = 1/179 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALR LT+SI
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRXLTASI 178


>gi|198385763|gb|ACH86225.1| RecA [Rhizobium sp. T136]
          Length = 181

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 150/180 (83%), Positives = 168/180 (93%), Gaps = 1/180 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  S+ E IE VS+GSLGLDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNESVVE-IETVSTGSLGLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181


>gi|110002995|emb|CAJ57784.1| recombinase A [Sinorhizobium kostiense]
 gi|110002997|emb|CAJ57785.1| recombinase A [Sinorhizobium kostiense]
          Length = 183

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 150/184 (81%), Positives = 170/184 (92%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERAFGKGSIMKLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG++LPGMQARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDNLPGMQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|297523473|emb|CBH31144.1| recombination protein A [Mesorhizobium sp. LCA1]
          Length = 180

 Score =  210 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 139/181 (76%), Positives = 165/181 (91%), Gaps = 1/181 (0%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           LSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSG
Sbjct: 1   LSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSG 59

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D 
Sbjct: 60  KTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDT 119

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS  +++F
Sbjct: 120 LVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTMVIF 179

Query: 200 I 200
           I
Sbjct: 180 I 180


>gi|29652019|gb|AAO87672.1| RecA [Listeria monocytogenes]
 gi|29652090|gb|AAO87707.1| RecA [Listeria monocytogenes]
 gi|29652272|gb|AAO87797.1| RecA [Listeria monocytogenes]
 gi|29652298|gb|AAO87810.1| RecA [Listeria monocytogenes]
          Length = 199

 Score =  210 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 134/201 (66%), Positives = 167/201 (83%), Gaps = 2/201 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MRMKIGVMFGSPETTTGGNAL 223
           +R K+GVMFG+PE T GG AL
Sbjct: 179 IREKVGVMFGNPEITPGGRAL 199


>gi|298103538|emb|CBH19580.1| recombinase A [Mesorhizobium sp. GAC138P]
          Length = 187

 Score =  210 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 139/182 (76%), Positives = 166/182 (91%), Gaps = 1/182 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTT
Sbjct: 7   IERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTT 65

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVR
Sbjct: 66  LALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVR 125

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS  +++FINQ
Sbjct: 126 SGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFINQ 185

Query: 203 MR 204
           +R
Sbjct: 186 IR 187


>gi|29652240|gb|AAO87781.1| RecA [Listeria monocytogenes]
          Length = 194

 Score =  210 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 129/195 (66%), Positives = 162/195 (83%), Gaps = 2/195 (1%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           + AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPE
Sbjct: 1   DQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPE 58

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI
Sbjct: 59  SSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEI 118

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I
Sbjct: 119 AEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTI 178

Query: 197 LVFINQMRMKIGVMF 211
            +FINQ+R K+GVMF
Sbjct: 179 AIFINQIREKVGVMF 193


>gi|223366141|gb|ACM88606.1| RecA [Rhizobium leguminosarum]
          Length = 184

 Score =  210 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 145/181 (80%), Positives = 167/181 (92%), Gaps = 1/181 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDK K LEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 4   VDKXKXLEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 63  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 123 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 182

Query: 190 I 190
           I
Sbjct: 183 I 183


>gi|29652166|gb|AAO87744.1| RecA [Listeria monocytogenes]
          Length = 194

 Score =  210 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 131/196 (66%), Positives = 164/196 (83%), Gaps = 2/196 (1%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESS
Sbjct: 1   ALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESS 58

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI +
Sbjct: 59  GKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAE 118

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +
Sbjct: 119 ALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAI 178

Query: 199 FINQMRMKIGVMFGSP 214
           FINQ+R K+GVMFG+P
Sbjct: 179 FINQIREKVGVMFGNP 194


>gi|110002973|emb|CAJ57773.1| recombinase A [Sinorhizobium arboris LMG 14919]
          Length = 183

 Score =  210 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 150/184 (81%), Positives = 170/184 (92%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|89145177|emb|CAJ57524.1| recombinase A [Microbacterium liquefaciens]
          Length = 214

 Score =  210 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 153/214 (71%), Positives = 177/214 (82%)

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTL LH IA +Q+ GG  AF+DAEHALD  YA KLGVD+  LL+SQPDTGEQA
Sbjct: 1   GPESSGKTTLTLHAIANAQRAGGIAAFIDAEHALDPDYAAKLGVDIDALLVSQPDTGEQA 60

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  ++++
Sbjct: 61  LEIADMLVRSGAIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQT 120

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
              ++FINQ+R KIGV FGSPETT GG ALKFY+SVR+DIRR+ ++KD     GN+TRVK
Sbjct: 121 NTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRMDIRRIETLKDGTDAVGNRTRVK 180

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           VVKNKMA PFKQ EFDI+YG GIS  G LID GV
Sbjct: 181 VVKNKMAPPFKQAEFDILYGVGISREGSLIDFGV 214


>gi|325650902|emb|CBY89634.1| RecA protein [Rhizobium sp. R-45818=1931]
 gi|325650904|emb|CBY89635.1| RecA protein [Rhizobium sp. R-45819=1932]
 gi|325651219|emb|CBY89431.1| RecA protein [Rhizobium giardinii]
          Length = 183

 Score =  210 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 152/184 (82%), Positives = 170/184 (92%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGGKDSIVE-IETVSTGSLSLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|298103540|emb|CBH19581.1| recombinase A [Mesorhizobium sp. GAC133P]
          Length = 187

 Score =  210 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 140/182 (76%), Positives = 166/182 (91%), Gaps = 1/182 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTT
Sbjct: 7   IERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTT 65

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVR
Sbjct: 66  LALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVR 125

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS  +++FINQ
Sbjct: 126 SGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFINQ 185

Query: 203 MR 204
           +R
Sbjct: 186 IR 187


>gi|30266951|gb|AAP21584.1| recombinase A [Erwinia amylovora]
 gi|30266953|gb|AAP21585.1| recombinase A [Erwinia amylovora]
 gi|30266955|gb|AAP21586.1| recombinase A [Erwinia amylovora]
 gi|30266957|gb|AAP21587.1| recombinase A [Erwinia amylovora]
 gi|30266959|gb|AAP21588.1| recombinase A [Erwinia amylovora]
 gi|30266961|gb|AAP21589.1| recombinase A [Erwinia amylovora]
 gi|30266963|gb|AAP21590.1| recombinase A [Erwinia pyrifoliae DSM 12163]
 gi|30266965|gb|AAP21591.1| recombinase A [Erwinia pyrifoliae Ep1/96]
 gi|30266967|gb|AAP21592.1| recombinase A [Erwinia pyrifoliae]
 gi|30266969|gb|AAP21593.1| recombinase A [Erwinia pyrifoliae]
 gi|30266971|gb|AAP21594.1| recombinase A [Erwinia pyrifoliae]
 gi|30266973|gb|AAP21595.1| recombinase A [Erwinia pyrifoliae]
          Length = 207

 Score =  210 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 149/207 (71%), Positives = 179/207 (86%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD 
Sbjct: 1   TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRKGKTCAFIDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+
Sbjct: 61  VYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SV
Sbjct: 121 SHMGLAARMMSQAMRKLAGNLKNSGTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVK 256
           RLDIRR+G+IK+ D + G++TRVKVVK
Sbjct: 181 RLDIRRIGAIKEGDEVVGSETRVKVVK 207


>gi|81294638|emb|CAI71760.1| recombinase A [Bradyrhizobium sp. BDV5057]
          Length = 186

 Score =  210 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 137/186 (73%), Positives = 164/186 (88%), Gaps = 1/186 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG        +E VSSGSLGLDIALGIGG PKGR+
Sbjct: 2   MDKSKALAAALSQIERQFGKGSVMRLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRV 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 121 GEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180

Query: 190 ISRSKC 195
           I++S  
Sbjct: 181 INKSNT 186


>gi|209571809|gb|ACI62757.1| recombinase A [Bradyrhizobium yuanmingense]
 gi|242263496|gb|ACS89044.1| recombinase A [Bradyrhizobium yuanmingense]
          Length = 185

 Score =  210 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 137/186 (73%), Positives = 164/186 (88%), Gaps = 1/186 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AALSQI+R +GKG++M+LG        IE VSSGSLGLDIALGIGG PKGRIVEIYG
Sbjct: 1   ALAAALSQIERQFGKGSVMKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S 
Sbjct: 120 EICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSN 179

Query: 195 CILVFI 200
            +++FI
Sbjct: 180 TMVIFI 185


>gi|198385757|gb|ACH86222.1| RecA [Sinorhizobium medicae]
          Length = 188

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 152/187 (81%), Positives = 172/187 (91%), Gaps = 1/187 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSK LEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI
Sbjct: 3   VDKSKXLEAALSQIERAFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 181

Query: 190 ISRSKCI 196
           IS+S C+
Sbjct: 182 ISKSNCM 188


>gi|146740937|emb|CAJ44529.1| recombinase A [Bradyrhizobium sp. CH2493]
 gi|146741037|emb|CAJ44618.1| recombinase A [Bradyrhizobium elkanii]
          Length = 186

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 136/186 (73%), Positives = 163/186 (87%), Gaps = 1/186 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG        +E VSSGSLGLDIALG+GG PKGR+
Sbjct: 2   MDKSKALSAALSQIERQFGKGSVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRV 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 121 GEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180

Query: 190 ISRSKC 195
           I++S  
Sbjct: 181 INKSHT 186


>gi|110002983|emb|CAJ57778.1| recombinase A [Sinorhizobium medicae]
 gi|110002987|emb|CAJ57780.1| recombinase A [Sinorhizobium medicae]
 gi|317453436|emb|CBX31936.1| RecA protein [Sinorhizobium medicae]
 gi|325651073|emb|CBY89358.1| RecA protein [Sinorhizobium medicae]
 gi|325651075|emb|CBY89359.1| RecA protein [Sinorhizobium medicae]
 gi|325651077|emb|CBY89360.1| RecA protein [Sinorhizobium medicae]
 gi|325651079|emb|CBY89361.1| RecA protein [Sinorhizobium medicae]
 gi|325651081|emb|CBY89362.1| RecA protein [Sinorhizobium medicae]
 gi|325651085|emb|CBY89364.1| RecA protein [Sinorhizobium medicae]
 gi|325651087|emb|CBY89365.1| RecA protein [Sinorhizobium medicae]
 gi|325651089|emb|CBY89366.1| RecA protein [Sinorhizobium medicae]
 gi|325651093|emb|CBY89368.1| RecA protein [Sinorhizobium medicae]
 gi|325651095|emb|CBY89369.1| RecA protein [Sinorhizobium medicae]
 gi|325651097|emb|CBY89370.1| RecA protein [Sinorhizobium medicae]
 gi|325651099|emb|CBY89371.1| RecA protein [Sinorhizobium medicae]
 gi|325651101|emb|CBY89372.1| RecA protein [Sinorhizobium medicae]
 gi|325651103|emb|CBY89373.1| RecA protein [Sinorhizobium medicae]
 gi|325651105|emb|CBY89374.1| RecA protein [Sinorhizobium medicae]
 gi|325651107|emb|CBY89375.1| RecA protein [Sinorhizobium medicae]
 gi|325651109|emb|CBY89376.1| RecA protein [Sinorhizobium medicae]
 gi|325651111|emb|CBY89377.1| RecA protein [Sinorhizobium medicae]
 gi|325651113|emb|CBY89378.1| RecA protein [Sinorhizobium medicae]
 gi|325651115|emb|CBY89379.1| RecA protein [Sinorhizobium medicae]
 gi|325651117|emb|CBY89380.1| RecA protein [Sinorhizobium medicae]
 gi|325651119|emb|CBY89381.1| RecA protein [Sinorhizobium medicae]
 gi|325651121|emb|CBY89382.1| RecA protein [Sinorhizobium medicae]
 gi|325651123|emb|CBY89383.1| RecA protein [Sinorhizobium medicae]
 gi|325651125|emb|CBY89384.1| RecA protein [Sinorhizobium medicae]
 gi|325651127|emb|CBY89385.1| RecA protein [Sinorhizobium medicae]
 gi|325651129|emb|CBY89386.1| RecA protein [Sinorhizobium medicae]
          Length = 183

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 151/184 (82%), Positives = 170/184 (92%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERAFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|325650918|emb|CBY89642.1| RecA protein [Rhizobium sp. R-45989=B577]
          Length = 181

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 148/180 (82%), Positives = 167/180 (92%), Gaps = 1/180 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E +S+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETISTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVDI+V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAVDILVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181


>gi|306450641|gb|ADM88573.1| RecA [Rhizobium sp. NRCPB10]
          Length = 181

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 145/180 (80%), Positives = 167/180 (92%), Gaps = 1/180 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT++
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAA 181


>gi|331029417|gb|AEC49858.1| recombinase A [Bradyrhizobium sp. SEMIA 6154]
          Length = 186

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 136/186 (73%), Positives = 163/186 (87%), Gaps = 1/186 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG        +E VSSGSLGLDIALG+GG PKGR+
Sbjct: 2   MDKSKALXAALSQIERQFGKGSVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRV 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 121 GEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180

Query: 190 ISRSKC 195
           I++S  
Sbjct: 181 INKSHT 186


>gi|30961729|gb|AAP39983.1| RecA [Helicobacter acinonychis]
          Length = 214

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 145/214 (67%), Positives = 182/214 (85%), Gaps = 1/214 (0%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEH
Sbjct: 1   DSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+G
Sbjct: 61  ALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALK 224
           DMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALK
Sbjct: 121 DMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALK 180

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           FY+SVR+DIRR+ ++K  +   GN+ +VKVVKNK
Sbjct: 181 FYASVRIDIRRIAALKQNEQHIGNRAKVKVVKNK 214


>gi|29652064|gb|AAO87694.1| RecA [Listeria monocytogenes]
 gi|29652120|gb|AAO87721.1| RecA [Listeria monocytogenes]
 gi|29652136|gb|AAO87729.1| RecA [Listeria monocytogenes]
 gi|29652174|gb|AAO87748.1| RecA [Listeria monocytogenes]
 gi|29652182|gb|AAO87752.1| RecA [Listeria monocytogenes]
 gi|29652192|gb|AAO87757.1| RecA [Listeria monocytogenes]
 gi|29652274|gb|AAO87798.1| RecA [Listeria monocytogenes]
 gi|29652284|gb|AAO87803.1| RecA [Listeria monocytogenes]
 gi|29652292|gb|AAO87807.1| RecA [Listeria monocytogenes]
          Length = 198

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 133/200 (66%), Positives = 166/200 (83%), Gaps = 2/200 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MRMKIGVMFGSPETTTGGNA 222
           +R K+GVMFG+PE T GG A
Sbjct: 179 IREKVGVMFGNPEITPGGRA 198


>gi|25005282|emb|CAD44249.1| RecA protein [Ensifer adhaerens]
 gi|25005284|emb|CAD44250.1| RecA protein [Ensifer adhaerens]
          Length = 183

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 150/184 (81%), Positives = 169/184 (91%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|6694823|gb|AAF25408.1|AF214761_1 RecA protein [Arthrobacter sp. 'SMCC G959']
          Length = 213

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 146/213 (68%), Positives = 178/213 (83%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD   L
Sbjct: 1   GLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHALDPEYAAKLGVDTDAL 60

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           L+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEIEGDMG+S  G+QARLMSQA
Sbjct: 61  LVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIEGDMGDSHVGLQARLMSQA 120

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           LRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ ++K+ 
Sbjct: 121 LRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQTLKEG 180

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275
               GN+T+ K+VKNKMA PFK  EFDI+YG+G
Sbjct: 181 ADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQG 213


>gi|269784254|emb|CBH50772.1| recA protein [Vibrio sp. Rd 6.8]
          Length = 206

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 146/203 (71%), Positives = 174/203 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +QK G TCAFVDA
Sbjct: 4   DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDA 63

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA+KLGVD+  LL+SQPDTGE ALEI D L RSGA+D++VIDSVAALTP+AEI
Sbjct: 64  EHALDPIYAQKLGVDIDALLVSQPDTGEPALEICDALARSGAIDVLVIDSVAALTPKAEI 123

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 124 EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNAL 183

Query: 224 KFYSSVRLDIRRVGSIKDKDSIT 246
           KFY+SVRLDIRR G+IKD D + 
Sbjct: 184 KFYASVRLDIRRTGAIKDGDEVV 206


>gi|325650680|emb|CBY89523.1| RecA protein [Rhizobium leguminosarum]
          Length = 183

 Score =  209 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 144/178 (80%), Positives = 166/178 (93%), Gaps = 1/178 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 177


>gi|81294646|emb|CAI71764.1| recombinase A [Bradyrhizobium sp. WSM1743]
 gi|146741019|emb|CAJ44532.1| recombinase A [Bradyrhizobium sp. CH2509]
 gi|146741039|emb|CAJ44619.1| recombinase A [Bradyrhizobium yuanmingense]
          Length = 186

 Score =  209 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 139/186 (74%), Positives = 164/186 (88%), Gaps = 1/186 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG        IE VSSGSLGLDIALGIGG PKGRI
Sbjct: 2   MDKSKALAAALSQIERQFGKGSVMKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 121 GEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180

Query: 190 ISRSKC 195
           I++S  
Sbjct: 181 INKSNT 186


>gi|117675769|emb|CAL69155.1| recombinase A [Mycetocola saprophilus]
 gi|117675771|emb|CAL69156.1| recombinase A [Mycetocola lacteus]
          Length = 218

 Score =  209 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 147/215 (68%), Positives = 177/215 (82%)

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTL LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI D
Sbjct: 1   GKTTLTLHAIANAQRQGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIAD 60

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           ML+RSG++D++VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T  ++++K   +
Sbjct: 61  MLIRSGSIDLVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGGLNQTKTTAI 120

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           FINQ+R KIGV FGSPETT+GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNK
Sbjct: 121 FINQLREKIGVFFGSPETTSGGKALKFYASVRLDIRRIETLKDGSDAVGNRTRVKVVKNK 180

Query: 259 MASPFKQVEFDIMYGEGISFFGELIDLGVKASIVD 293
           MA PFKQ EFDI+YG GIS  G LID GV+  +V 
Sbjct: 181 MAPPFKQAEFDILYGVGISREGSLIDFGVEHGLVQ 215


>gi|29652154|gb|AAO87738.1| RecA [Listeria monocytogenes]
 gi|29652238|gb|AAO87780.1| RecA [Listeria monocytogenes]
 gi|29652278|gb|AAO87800.1| RecA [Listeria monocytogenes]
          Length = 197

 Score =  209 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 132/199 (66%), Positives = 165/199 (82%), Gaps = 2/199 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MRMKIGVMFGSPETTTGGN 221
           +R K+GVMFG+PE T GG 
Sbjct: 179 IREKVGVMFGNPEITPGGR 197


>gi|89143249|emb|CAJ57519.1| recombinase A [Microbacterium imperiale]
          Length = 212

 Score =  209 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 146/212 (68%), Positives = 173/212 (81%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DML+RSG
Sbjct: 1   LHAIANAQRAGGIAAFIDAEHALDPSYAQKLGVDIDALLVSQPDTGEQALEIADMLIRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A+D++VIDSVAAL P AEI+G+MG+S  G+QARLMSQALRKLT  ++++K   +FINQ+R
Sbjct: 61  AIDLVVIDSVAALVPEAEIKGEMGDSHVGLQARLMSQALRKLTGGLNQTKTTAIFINQLR 120

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
            KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA PFK
Sbjct: 121 EKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKMAPPFK 180

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
           Q EFDI+YG GIS  G LID GV+  IV KSG
Sbjct: 181 QAEFDILYGVGISREGSLIDFGVEHGIVKKSG 212


>gi|146741031|emb|CAJ44539.1| recombinase A [Bradyrhizobium sp. F3b]
          Length = 186

 Score =  209 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 137/186 (73%), Positives = 163/186 (87%), Gaps = 1/186 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG        +E VSSGSLGLDIALG+GG PKGR+
Sbjct: 2   MDKSKALSAALSQIERQFGKGSVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRV 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 121 GEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180

Query: 190 ISRSKC 195
           I++S  
Sbjct: 181 INKSHT 186


>gi|29652214|gb|AAO87768.1| RecA [Listeria monocytogenes]
          Length = 196

 Score =  209 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 131/198 (66%), Positives = 164/198 (82%), Gaps = 2/198 (1%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
            QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGK
Sbjct: 1   KQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGK 58

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + L
Sbjct: 59  TTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEAL 118

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FI
Sbjct: 119 VRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFI 178

Query: 201 NQMRMKIGVMFGSPETTT 218
           NQ+R K+GVMFG+PE T 
Sbjct: 179 NQIREKVGVMFGNPEITP 196


>gi|110002977|emb|CAJ57775.1| recombinase A [Sinorhizobium meliloti]
 gi|110002979|emb|CAJ57776.1| recombinase A [Sinorhizobium meliloti]
 gi|317453404|emb|CBX31920.1| RecA protein [Sinorhizobium meliloti]
 gi|317453406|emb|CBX31921.1| RecA protein [Sinorhizobium meliloti]
 gi|317453408|emb|CBX31922.1| RecA protein [Sinorhizobium meliloti]
 gi|317453410|emb|CBX31923.1| RecA protein [Sinorhizobium meliloti]
 gi|317453412|emb|CBX31924.1| RecA protein [Sinorhizobium meliloti]
 gi|317453416|emb|CBX31926.1| RecA protein [Sinorhizobium meliloti]
 gi|317453418|emb|CBX31927.1| RecA protein [Sinorhizobium meliloti]
 gi|317453422|emb|CBX31929.1| RecA protein [Sinorhizobium meliloti]
 gi|317453424|emb|CBX31930.1| RecA protein [Sinorhizobium meliloti]
 gi|317453426|emb|CBX31931.1| RecA protein [Sinorhizobium meliloti]
 gi|325651131|emb|CBY89387.1| RecA protein [Sinorhizobium meliloti]
 gi|325651133|emb|CBY89388.1| RecA protein [Sinorhizobium meliloti]
 gi|325651135|emb|CBY89389.1| RecA protein [Sinorhizobium meliloti]
 gi|325651141|emb|CBY89392.1| RecA protein [Sinorhizobium meliloti]
 gi|325651145|emb|CBY89394.1| RecA protein [Sinorhizobium meliloti]
 gi|325651147|emb|CBY89395.1| RecA protein [Sinorhizobium meliloti]
 gi|325651149|emb|CBY89396.1| RecA protein [Sinorhizobium meliloti]
 gi|325651151|emb|CBY89397.1| RecA protein [Sinorhizobium meliloti]
 gi|325651153|emb|CBY89398.1| RecA protein [Sinorhizobium meliloti]
 gi|325651155|emb|CBY89399.1| RecA protein [Sinorhizobium meliloti]
 gi|325651157|emb|CBY89400.1| RecA protein [Sinorhizobium meliloti]
 gi|325651159|emb|CBY89401.1| RecA protein [Sinorhizobium meliloti]
 gi|325651161|emb|CBY89402.1| RecA protein [Sinorhizobium meliloti]
 gi|325651167|emb|CBY89405.1| RecA protein [Sinorhizobium meliloti]
 gi|325651169|emb|CBY89406.1| RecA protein [Sinorhizobium meliloti]
 gi|325651171|emb|CBY89407.1| RecA protein [Sinorhizobium meliloti]
 gi|325651173|emb|CBY89408.1| RecA protein [Sinorhizobium meliloti]
          Length = 183

 Score =  209 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 151/184 (82%), Positives = 170/184 (92%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|117675789|emb|CAL69165.1| recombinase A [Curtobacterium flaccumfaciens pv. poinsettiae]
          Length = 214

 Score =  209 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 144/214 (67%), Positives = 173/214 (80%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL +H IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDT EQALEI DMLV
Sbjct: 1   TLTIHAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTAEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG++D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL   +++++  ++FIN
Sbjct: 61  RSGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGGLNQTQTTMIFIN 120

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+R KIGV FGSPETT+GG ALKFY+SVRLDIRR+ ++K      GN+TRVKVVKNKMA 
Sbjct: 121 QLREKIGVFFGSPETTSGGKALKFYASVRLDIRRIETLKSGTDAVGNRTRVKVVKNKMAP 180

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295
           PFKQ EFDI+YG GIS  G L+D GV   IV KS
Sbjct: 181 PFKQAEFDILYGVGISREGSLLDFGVDHGIVKKS 214


>gi|317449036|emb|CBX31919.1| RecA protein [Sinorhizobium meliloti]
 gi|317453414|emb|CBX31925.1| RecA protein [Sinorhizobium meliloti]
 gi|317453420|emb|CBX31928.1| RecA protein [Sinorhizobium meliloti]
 gi|325651069|emb|CBY89356.1| RecA protein [Sinorhizobium kummerowiae]
 gi|325651071|emb|CBY89357.1| RecA protein [Sinorhizobium kummerowiae]
          Length = 183

 Score =  209 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 152/184 (82%), Positives = 170/184 (92%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|198385747|gb|ACH86217.1| RecA [Sinorhizobium meliloti]
 gi|198385749|gb|ACH86218.1| RecA [Sinorhizobium meliloti]
          Length = 186

 Score =  209 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 152/185 (82%), Positives = 171/185 (92%), Gaps = 1/185 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 181

Query: 190 ISRSK 194
           IS+S 
Sbjct: 182 ISKSN 186


>gi|29652140|gb|AAO87731.1| RecA [Listeria monocytogenes]
 gi|29652196|gb|AAO87759.1| RecA [Listeria monocytogenes]
 gi|29652232|gb|AAO87777.1| RecA [Listeria monocytogenes]
 gi|29652254|gb|AAO87788.1| RecA [Listeria monocytogenes]
          Length = 196

 Score =  209 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 132/198 (66%), Positives = 165/198 (83%), Gaps = 2/198 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MRMKIGVMFGSPETTTGG 220
           +R K+GVMFG+PE T GG
Sbjct: 179 IREKVGVMFGNPEITPGG 196


>gi|25005286|emb|CAD44251.1| RecA protein [Ensifer adhaerens]
          Length = 183

 Score =  209 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 152/184 (82%), Positives = 169/184 (91%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD IYARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPIYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|146741033|emb|CAJ44540.1| recombinase A [Bradyrhizobium sp. KFR22]
          Length = 186

 Score =  209 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 139/186 (74%), Positives = 165/186 (88%), Gaps = 1/186 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG +      IE VSSGSLGLDIALGIGG PKGRI
Sbjct: 2   MDKSKALAAALSQIERQFGKGSVMKLG-KSDRSMDIEAVSSGSLGLDIALGIGGLPKGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 121 GEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180

Query: 190 ISRSKC 195
           I++S  
Sbjct: 181 INKSNT 186


>gi|325651163|emb|CBY89403.1| RecA protein [Sinorhizobium meliloti]
 gi|325651165|emb|CBY89404.1| RecA protein [Sinorhizobium meliloti]
          Length = 183

 Score =  209 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 152/184 (82%), Positives = 170/184 (92%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|25005322|emb|CAD44255.1| RecA protein [Ensifer adhaerens]
          Length = 183

 Score =  208 bits (530), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 151/184 (82%), Positives = 169/184 (91%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+D++VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDVLVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|198385761|gb|ACH86224.1| RecA [Sinorhizobium meliloti]
          Length = 185

 Score =  208 bits (530), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 152/184 (82%), Positives = 171/184 (92%), Gaps = 1/184 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 181

Query: 190 ISRS 193
           IS+S
Sbjct: 182 ISKS 185


>gi|110003015|emb|CAJ57794.1| recombinase A [Ensifer adhaerens]
          Length = 183

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 152/184 (82%), Positives = 169/184 (91%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+D++VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDVLVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|81294640|emb|CAI71761.1| recombinase A [Bradyrhizobium sp. BDV5325]
 gi|146740927|emb|CAJ44524.1| recombinase A [Bradyrhizobium sp. C8]
 gi|146740929|emb|CAJ44525.1| recombinase A [Bradyrhizobium sp. CH2310]
 gi|146740931|emb|CAJ44526.1| recombinase A [Bradyrhizobium sp. CH2318]
 gi|146740935|emb|CAJ44528.1| recombinase A [Bradyrhizobium sp. CH2443]
 gi|146741017|emb|CAJ44531.1| recombinase A [Bradyrhizobium sp. CH2506]
 gi|146741021|emb|CAJ44533.1| recombinase A [Bradyrhizobium sp. CH2510]
 gi|146741023|emb|CAJ44534.1| recombinase A [Bradyrhizobium sp. FTA6]
 gi|146741027|emb|CAJ44536.1| recombinase A [Bradyrhizobium sp. Lcamp1]
 gi|146741035|emb|CAJ44617.1| recombinase A [Bradyrhizobium japonicum]
 gi|161784374|emb|CAJ44538.1| recombinase A [Bradyrhizobium sp. RLA08]
          Length = 186

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 137/186 (73%), Positives = 164/186 (88%), Gaps = 1/186 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG        +E VSSGSLGLDIALGIGG PKGR+
Sbjct: 2   MDKSKALAAALSQIERQFGKGSVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRV 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 121 GEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180

Query: 190 ISRSKC 195
           I++S  
Sbjct: 181 INKSNT 186


>gi|29651969|gb|AAO87647.1| RecA [Listeria monocytogenes]
 gi|29651977|gb|AAO87651.1| RecA [Listeria monocytogenes]
 gi|29652007|gb|AAO87666.1| RecA [Listeria monocytogenes]
 gi|29652025|gb|AAO87675.1| RecA [Listeria monocytogenes]
 gi|29652116|gb|AAO87719.1| RecA [Listeria monocytogenes]
 gi|29652150|gb|AAO87736.1| RecA [Listeria monocytogenes]
 gi|29652170|gb|AAO87746.1| RecA [Listeria monocytogenes]
 gi|29652186|gb|AAO87754.1| RecA [Listeria monocytogenes]
 gi|29652194|gb|AAO87758.1| RecA [Listeria monocytogenes]
 gi|29652198|gb|AAO87760.1| RecA [Listeria monocytogenes]
 gi|29652226|gb|AAO87774.1| RecA [Listeria monocytogenes]
 gi|29652236|gb|AAO87779.1| RecA [Listeria monocytogenes]
 gi|29652262|gb|AAO87792.1| RecA [Listeria monocytogenes]
 gi|29652266|gb|AAO87794.1| RecA [Listeria monocytogenes]
 gi|29652282|gb|AAO87802.1| RecA [Listeria monocytogenes]
          Length = 195

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 131/197 (66%), Positives = 164/197 (83%), Gaps = 2/197 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MRMKIGVMFGSPETTTG 219
           +R K+GVMFG+PE T G
Sbjct: 179 IREKVGVMFGNPEITPG 195


>gi|25005288|emb|CAD44252.1| RecA protein [Ensifer adhaerens]
 gi|25005290|emb|CAD44253.1| RecA protein [Ensifer adhaerens]
 gi|25005292|emb|CAD44254.1| RecA protein [Ensifer adhaerens]
          Length = 183

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 148/184 (80%), Positives = 169/184 (91%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG++LPGMQARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDNLPGMQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|99866625|gb|ABF67650.1| RecA [Pectobacterium carotovorum]
 gi|99866641|gb|ABF67658.1| RecA [Pectobacterium carotovorum]
 gi|99866645|gb|ABF67660.1| RecA [Pectobacterium carotovorum]
 gi|99866649|gb|ABF67662.1| RecA [Pectobacterium carotovorum]
 gi|99866651|gb|ABF67663.1| RecA [Pectobacterium carotovorum]
 gi|99866653|gb|ABF67664.1| RecA [Pectobacterium carotovorum]
 gi|99866655|gb|ABF67665.1| RecA [Pectobacterium carotovorum]
 gi|99866659|gb|ABF67667.1| RecA [Pectobacterium carotovorum]
 gi|99866661|gb|ABF67668.1| RecA [Pectobacterium carotovorum]
 gi|99866667|gb|ABF67671.1| RecA [Pectobacterium carotovorum]
 gi|99866669|gb|ABF67672.1| RecA [Pectobacterium carotovorum]
 gi|99866683|gb|ABF67679.1| RecA [Pectobacterium carotovorum]
          Length = 204

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 146/204 (71%), Positives = 176/204 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD
Sbjct: 1   STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G
Sbjct: 61  PIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+S
Sbjct: 121 DSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRV 252
           VRLDIRR G+IKD + + G++TRV
Sbjct: 181 VRLDIRRTGAIKDGEEVVGSETRV 204


>gi|225008780|gb|ACN78938.1| RecA [Rhizobium sp. PETP03]
 gi|225008782|gb|ACN78939.1| RecA [Rhizobium sp. PETP06]
          Length = 179

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 144/180 (80%), Positives = 167/180 (92%), Gaps = 1/180 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           ALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYG
Sbjct: 1   ALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQAL
Sbjct: 60  PESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S 
Sbjct: 120 EITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSN 179


>gi|9909735|emb|CAC04335.1| RecA protein [Mesorhizobium ciceri]
 gi|9909737|emb|CAC04339.1| RecA protein [Mesorhizobium huakuii]
 gi|9909739|emb|CAC04341.1| RecA protein [Mesorhizobium loti]
 gi|9909820|emb|CAC04345.1| RecA protein [Mesorhizobium mediterraneum]
 gi|45825396|gb|AAS77547.1| RecA protein [Mesorhizobium sp. ICMP 11722]
 gi|45825398|gb|AAS77548.1| RecA protein [Mesorhizobium sp. ICMP 12635]
 gi|45825400|gb|AAS77549.1| RecA protein [Mesorhizobium amorphae]
 gi|45825402|gb|AAS77550.1| RecA protein [Mesorhizobium sp. ICMP 14319]
 gi|45825404|gb|AAS77551.1| RecA protein [Mesorhizobium sp. ICMP 11708]
 gi|45825406|gb|AAS77552.1| RecA protein [Mesorhizobium sp. ICMP 11719]
 gi|45825410|gb|AAS77554.1| RecA protein [Mesorhizobium sp. ICMP 11541]
 gi|45825412|gb|AAS77555.1| RecA protein [Mesorhizobium sp. ICMP 13190]
 gi|45825414|gb|AAS77556.1| RecA protein [Mesorhizobium sp. ICMP 12685]
          Length = 177

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 140/178 (78%), Positives = 164/178 (92%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGP
Sbjct: 1   LDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           I D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS
Sbjct: 120 ICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRS 177


>gi|255040337|gb|ACT99981.1| recombinase A [Lactobacillus acidophilus]
          Length = 220

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 128/210 (60%), Positives = 170/210 (80%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99
                I  V +GSL LD A+G+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A
Sbjct: 1   KADTQISTVPTGSLALDAAIGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAA 60

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           ++DAE+A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL P
Sbjct: 61  YIDAENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVP 120

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           RAEIEG+MG++  G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT G
Sbjct: 121 RAEIEGEMGDAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPG 180

Query: 220 GNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           G ALKFYS+VRL++RR   IK    + GN+
Sbjct: 181 GRALKFYSTVRLEVRRAEQIKQSGDVLGNR 210


>gi|11244969|gb|AAG33386.1| RecA protein [Vibrio parahaemolyticus]
          Length = 232

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 154/220 (70%), Positives = 189/220 (85%)

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSG TTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQP
Sbjct: 11  RIVEIYGPESSGXTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQP 70

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT
Sbjct: 71  DTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLT 130

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + G
Sbjct: 131 GNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVG 190

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           N+TR+KVVKNK+A+PFK+    IMYG+G    GELIDLGV
Sbjct: 191 NETRIKVVKNKIAAPFKEANTQIMYGQGFXRXGELIDLGV 230


>gi|226973221|gb|ACO95151.1| recombinase A [Bradyrhizobium sp. RST89]
          Length = 185

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 133/186 (71%), Positives = 163/186 (87%), Gaps = 1/186 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           +AL AALSQI+R +GKG++M+LG        IE +SSGSLGLDIALG+GG PKGR+VEIY
Sbjct: 1   QALSAALSQIERQFGKGSVMKLGKNDRSM-DIETISSGSLGLDIALGVGGLPKGRVVEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQA
Sbjct: 60  GPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 120 LEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 179

Query: 194 KCILVF 199
             +++F
Sbjct: 180 NTMVIF 185


>gi|146741025|emb|CAJ44535.1| recombinase A [Bradyrhizobium sp. FTA7]
          Length = 186

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 138/186 (74%), Positives = 164/186 (88%), Gaps = 1/186 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG        +E VSSGSLGLDIALGIGG PKGR+
Sbjct: 2   MDKSKALAAALSQIERQFGKGSVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRV 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 121 GEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180

Query: 190 ISRSKC 195
           I++S  
Sbjct: 181 INKSNT 186


>gi|117675791|emb|CAL69166.1| recombinase A [Curtobacterium flaccumfaciens pv. flaccumfaciens]
          Length = 215

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 145/215 (67%), Positives = 174/215 (80%)

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTL +H IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDT EQALEI D
Sbjct: 1   GKTTLTIHAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTAEQALEIAD 60

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           MLVRSG++D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL   +++++  ++
Sbjct: 61  MLVRSGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGGLNQTQTTMI 120

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           FINQ+R KIGV FGSPETT+GG ALKFY+SVRLDIRR+ ++K      GN+TRVKVVKNK
Sbjct: 121 FINQLREKIGVFFGSPETTSGGKALKFYASVRLDIRRIETLKSGTDAVGNRTRVKVVKNK 180

Query: 259 MASPFKQVEFDIMYGEGISFFGELIDLGVKASIVD 293
           MA PFKQ EFDI+YG GIS  G L+D GV   IV 
Sbjct: 181 MAPPFKQAEFDILYGVGISREGSLLDFGVDHGIVK 215


>gi|6694828|gb|AAF25413.1|AF214766_1 RecA protein [Arthrobacter sp. 'SMCC G968']
          Length = 212

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 146/212 (68%), Positives = 177/212 (83%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           IGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD  
Sbjct: 1   IGGLPRGRVVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDAEHALDPEYAAKLGVDTD 60

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIEGDMG+S  G+QARLMS
Sbjct: 61  ALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQARLMS 120

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           QALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ ++K
Sbjct: 121 QALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQTLK 180

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +     GN+T+ K+VKNKMA PFK  EFDI+Y
Sbjct: 181 EGADSVGNRTKAKIVKNKMAPPFKVAEFDIIY 212


>gi|323147035|gb|ADX32799.1| recombinase A [endophytic bacterium 15(2011)]
          Length = 196

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 142/197 (72%), Positives = 174/197 (88%), Gaps = 1/197 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG++M+LG  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSVMRLG-AGEVVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LVRS
Sbjct: 60  TLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPDTGEQALEIADALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMFGSPETTTGG 220
           RMKIGVMFG+PETTTGG
Sbjct: 180 RMKIGVMFGNPETTTGG 196


>gi|241993205|gb|ACS74121.1| RecA [Vibrio parahaemolyticus]
          Length = 214

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 150/214 (70%), Positives = 185/214 (86%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD
Sbjct: 1   LGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVD 60

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEI+G+MG+S  G+QAR+
Sbjct: 61  IDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIKGEMGDSHMGLQARM 120

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           +SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+
Sbjct: 121 LSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGA 180

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           IK+ D + GN+TR+KVVKNK+A+PFK+    IMY
Sbjct: 181 IKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMY 214


>gi|223469851|gb|ACM90268.1| RecA [Vibrio parahaemolyticus]
 gi|223469853|gb|ACM90269.1| RecA [Vibrio parahaemolyticus]
 gi|223469855|gb|ACM90270.1| RecA [Vibrio parahaemolyticus]
 gi|223469857|gb|ACM90271.1| RecA [Vibrio parahaemolyticus]
 gi|223469859|gb|ACM90272.1| RecA [Vibrio parahaemolyticus]
 gi|223469861|gb|ACM90273.1| RecA [Vibrio parahaemolyticus]
 gi|223469863|gb|ACM90274.1| RecA [Vibrio parahaemolyticus]
 gi|223469865|gb|ACM90275.1| RecA [Vibrio parahaemolyticus]
 gi|223469867|gb|ACM90276.1| RecA [Vibrio parahaemolyticus]
 gi|223469869|gb|ACM90277.1| RecA [Vibrio parahaemolyticus]
 gi|223469871|gb|ACM90278.1| RecA [Vibrio parahaemolyticus]
 gi|223469873|gb|ACM90279.1| RecA [Vibrio parahaemolyticus]
 gi|223469875|gb|ACM90280.1| RecA [Vibrio parahaemolyticus]
 gi|223469877|gb|ACM90281.1| RecA [Vibrio parahaemolyticus]
 gi|223469879|gb|ACM90282.1| RecA [Vibrio parahaemolyticus]
 gi|223469881|gb|ACM90283.1| RecA [Vibrio parahaemolyticus]
 gi|241993127|gb|ACS74082.1| RecA [Vibrio parahaemolyticus]
 gi|241993129|gb|ACS74083.1| RecA [Vibrio parahaemolyticus]
 gi|241993131|gb|ACS74084.1| RecA [Vibrio parahaemolyticus]
 gi|241993133|gb|ACS74085.1| RecA [Vibrio parahaemolyticus]
 gi|241993135|gb|ACS74086.1| RecA [Vibrio parahaemolyticus]
 gi|241993137|gb|ACS74087.1| RecA [Vibrio parahaemolyticus]
 gi|241993139|gb|ACS74088.1| RecA [Vibrio parahaemolyticus]
 gi|241993141|gb|ACS74089.1| RecA [Vibrio parahaemolyticus]
 gi|241993143|gb|ACS74090.1| RecA [Vibrio parahaemolyticus]
 gi|241993145|gb|ACS74091.1| RecA [Vibrio parahaemolyticus]
 gi|241993147|gb|ACS74092.1| RecA [Vibrio parahaemolyticus]
 gi|241993149|gb|ACS74093.1| RecA [Vibrio parahaemolyticus]
 gi|241993151|gb|ACS74094.1| RecA [Vibrio parahaemolyticus]
 gi|241993153|gb|ACS74095.1| RecA [Vibrio parahaemolyticus]
 gi|241993157|gb|ACS74097.1| RecA [Vibrio parahaemolyticus]
 gi|241993159|gb|ACS74098.1| RecA [Vibrio parahaemolyticus]
 gi|241993161|gb|ACS74099.1| RecA [Vibrio parahaemolyticus]
 gi|241993163|gb|ACS74100.1| RecA [Vibrio parahaemolyticus]
 gi|241993165|gb|ACS74101.1| RecA [Vibrio parahaemolyticus]
 gi|241993167|gb|ACS74102.1| RecA [Vibrio parahaemolyticus]
 gi|241993169|gb|ACS74103.1| RecA [Vibrio parahaemolyticus]
 gi|241993171|gb|ACS74104.1| RecA [Vibrio parahaemolyticus]
 gi|241993173|gb|ACS74105.1| RecA [Vibrio parahaemolyticus]
 gi|241993175|gb|ACS74106.1| RecA [Vibrio parahaemolyticus]
 gi|241993177|gb|ACS74107.1| RecA [Vibrio parahaemolyticus]
 gi|241993179|gb|ACS74108.1| RecA [Vibrio parahaemolyticus]
 gi|241993181|gb|ACS74109.1| RecA [Vibrio parahaemolyticus]
 gi|241993185|gb|ACS74111.1| RecA [Vibrio parahaemolyticus]
 gi|241993187|gb|ACS74112.1| RecA [Vibrio parahaemolyticus]
 gi|241993189|gb|ACS74113.1| RecA [Vibrio parahaemolyticus]
 gi|241993191|gb|ACS74114.1| RecA [Vibrio parahaemolyticus]
 gi|241993193|gb|ACS74115.1| RecA [Vibrio parahaemolyticus]
 gi|241993197|gb|ACS74117.1| RecA [Vibrio parahaemolyticus]
 gi|241993199|gb|ACS74118.1| RecA [Vibrio parahaemolyticus]
 gi|241993201|gb|ACS74119.1| RecA [Vibrio parahaemolyticus]
 gi|241993203|gb|ACS74120.1| RecA [Vibrio parahaemolyticus]
 gi|241993207|gb|ACS74122.1| RecA [Vibrio parahaemolyticus]
 gi|241993209|gb|ACS74123.1| RecA [Vibrio parahaemolyticus]
 gi|241993211|gb|ACS74124.1| RecA [Vibrio parahaemolyticus]
 gi|241993213|gb|ACS74125.1| RecA [Vibrio parahaemolyticus]
 gi|241993215|gb|ACS74126.1| RecA [Vibrio parahaemolyticus]
 gi|241993217|gb|ACS74127.1| RecA [Vibrio parahaemolyticus]
 gi|241993219|gb|ACS74128.1| RecA [Vibrio parahaemolyticus]
 gi|241993221|gb|ACS74129.1| RecA [Vibrio parahaemolyticus]
 gi|241993223|gb|ACS74130.1| RecA [Vibrio parahaemolyticus]
 gi|241993225|gb|ACS74131.1| RecA [Vibrio parahaemolyticus]
 gi|241993227|gb|ACS74132.1| RecA [Vibrio parahaemolyticus]
 gi|241993229|gb|ACS74133.1| RecA [Vibrio parahaemolyticus]
 gi|241993231|gb|ACS74134.1| RecA [Vibrio parahaemolyticus]
 gi|241993233|gb|ACS74135.1| RecA [Vibrio parahaemolyticus]
 gi|241993235|gb|ACS74136.1| RecA [Vibrio parahaemolyticus]
 gi|241993237|gb|ACS74137.1| RecA [Vibrio parahaemolyticus]
 gi|241993239|gb|ACS74138.1| RecA [Vibrio parahaemolyticus]
 gi|241993241|gb|ACS74139.1| RecA [Vibrio parahaemolyticus]
 gi|241993243|gb|ACS74140.1| RecA [Vibrio parahaemolyticus]
 gi|241993245|gb|ACS74141.1| RecA [Vibrio parahaemolyticus]
 gi|241993247|gb|ACS74142.1| RecA [Vibrio parahaemolyticus]
 gi|241993249|gb|ACS74143.1| RecA [Vibrio parahaemolyticus]
 gi|241993251|gb|ACS74144.1| RecA [Vibrio parahaemolyticus]
          Length = 214

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 151/214 (70%), Positives = 185/214 (86%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD
Sbjct: 1   LGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVD 60

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR+
Sbjct: 61  IDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARM 120

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           +SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+
Sbjct: 121 LSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGA 180

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           IK+ D + GN+TR+KVVKNK+A+PFK+    IMY
Sbjct: 181 IKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMY 214


>gi|117675781|emb|CAL69161.1| recombinase A [Rathayibacter festucae]
          Length = 219

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 154/219 (70%), Positives = 180/219 (82%)

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTL LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+ +LL+SQPDTGEQALEI D
Sbjct: 1   GKTTLTLHAIANAQRNGGIAAFIDAEHALDPEYAKKLGVDIDSLLVSQPDTGEQALEIAD 60

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           MLVRSG++D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  ++ +   ++
Sbjct: 61  MLVRSGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNTTNTTMI 120

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNK
Sbjct: 121 FINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVGNRTRVKVVKNK 180

Query: 259 MASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           MA PFKQ EFDI+YG GIS  G LID GV+  IV KSGA
Sbjct: 181 MAPPFKQAEFDILYGIGISREGSLIDFGVEHEIVRKSGA 219


>gi|9909818|emb|CAC04355.1| RecA protein [Mesorhizobium tianshanense]
          Length = 177

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 141/178 (79%), Positives = 164/178 (92%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRIVEIYGP
Sbjct: 1   LDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           I D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS
Sbjct: 120 ICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRS 177


>gi|146740933|emb|CAJ44527.1| recombinase A [Bradyrhizobium sp. CH2437]
          Length = 186

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 135/186 (72%), Positives = 163/186 (87%), Gaps = 1/186 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KAL AALSQI+R +GKG++M+LG        +E +SSGSLGLDIALGIGG P+GR+
Sbjct: 2   MDKTKALAAALSQIERQFGKGSVMKLGKNDRSM-DVEAISSGSLGLDIALGIGGLPRGRV 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 121 GEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180

Query: 190 ISRSKC 195
           I++S  
Sbjct: 181 INKSNT 186


>gi|81294634|emb|CAI71758.1| recombinase A [Bradyrhizobium sp. 4S16]
 gi|146741015|emb|CAJ44530.1| recombinase A [Bradyrhizobium sp. CH2498]
          Length = 186

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 140/186 (75%), Positives = 164/186 (88%), Gaps = 1/186 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG        IE VSSGSLGLDIALGIGG PKGRI
Sbjct: 2   MDKSKALAAALSQIERQFGKGSVMKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 121 GEQALEICDTLVRSGAVDVMVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180

Query: 190 ISRSKC 195
           I++S  
Sbjct: 181 INKSNT 186


>gi|81294642|emb|CAI71762.1| recombinase A [Bradyrhizobium sp. WSM1704]
          Length = 186

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 138/186 (74%), Positives = 163/186 (87%), Gaps = 1/186 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG        +E VSSGSLGLDIALG+GG PKGRI
Sbjct: 2   MDKSKALSAALSQIERQFGKGSVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 121 GEQALEIADTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180

Query: 190 ISRSKC 195
           I++S  
Sbjct: 181 INKSNT 186


>gi|117675767|emb|CAL69154.1| recombinase A [Cryobacterium psychrophilum]
          Length = 213

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 151/213 (70%), Positives = 175/213 (82%)

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTL LH IA +QK GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DM
Sbjct: 1   KTTLTLHAIANAQKNGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIADM 60

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           LVRSG++D+IV+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  +S++   ++F
Sbjct: 61  LVRSGSIDLIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLSQTNTTMIF 120

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           INQ+R KIGV FGSPETT+GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKM
Sbjct: 121 INQLREKIGVFFGSPETTSGGKALKFYASVRLDIRRIETLKDGTDAIGNRTRVKVVKNKM 180

Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           A PFKQ EFDIMYG GIS  G LID GV   IV
Sbjct: 181 APPFKQAEFDIMYGIGISREGSLIDFGVDQGIV 213


>gi|81294630|emb|CAI71756.1| recombinase A [Bradyrhizobium sp. 1S20]
          Length = 186

 Score =  208 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 137/186 (73%), Positives = 163/186 (87%), Gaps = 1/186 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG        +E +SSGSLGLDIALGIGG PKGR+
Sbjct: 2   MDKSKALAAALSQIERQFGKGSVMKLGKNDRSM-DVESISSGSLGLDIALGIGGLPKGRV 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 121 GEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180

Query: 190 ISRSKC 195
           I++S  
Sbjct: 181 INKSNT 186


>gi|297523469|emb|CBH31142.1| recombination protein A [Mesorhizobium sp. LPYR2]
          Length = 178

 Score =  208 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 137/176 (77%), Positives = 159/176 (90%), Gaps = 1/176 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P
Sbjct: 3   EDKSVDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLP 61

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 62  RGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 121

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           QPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQ
Sbjct: 122 QPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQ 177


>gi|99866647|gb|ABF67661.1| RecA [Pectobacterium carotovorum]
          Length = 204

 Score =  208 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 146/204 (71%), Positives = 176/204 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD
Sbjct: 1   STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G
Sbjct: 61  PIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+S
Sbjct: 121 DSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRV 252
           VRLDIRR G+IKD + + G++TRV
Sbjct: 181 VRLDIRRTGAIKDGEXVVGSETRV 204


>gi|30961733|gb|AAP39985.1| RecA [Helicobacter acinonychis]
 gi|30961735|gb|AAP39986.1| RecA [Helicobacter acinonychis]
          Length = 214

 Score =  208 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 144/214 (67%), Positives = 181/214 (84%), Gaps = 1/214 (0%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEH
Sbjct: 1   DSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+G
Sbjct: 61  ALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALK 224
           DMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALK
Sbjct: 121 DMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALK 180

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           FY+SVR+DIRR+ ++K  +   GN+ + KVVKNK
Sbjct: 181 FYASVRIDIRRIAALKQNEQHIGNRAKAKVVKNK 214


>gi|81294632|emb|CAI71757.1| recombinase A [Bradyrhizobium sp. 3S16]
 gi|81294636|emb|CAI71759.1| recombinase A [Bradyrhizobium sp. BDV5029]
 gi|81294650|emb|CAI71766.1| recombinase A [Bradyrhizobium sp. WSM2148]
 gi|81294652|emb|CAI71767.1| recombinase A [Bradyrhizobium sp. WSM2149]
 gi|81294654|emb|CAI71768.1| recombinase A [Bradyrhizobium sp. WSM2150]
 gi|81294656|emb|CAI71769.1| recombinase A [Bradyrhizobium sp. WSM2152]
 gi|81294658|emb|CAI71770.1| recombinase A [Bradyrhizobium sp. WSM2154]
 gi|81294660|emb|CAI71771.1| recombinase A [Bradyrhizobium sp. WSM2155]
 gi|81294662|emb|CAI71772.1| recombinase A [Bradyrhizobium sp. WSM2157]
 gi|81294664|emb|CAI71773.1| recombinase A [Bradyrhizobium sp. WSM471]
 gi|81294666|emb|CAI71774.1| recombinase A [Bradyrhizobium sp. WU140]
 gi|81294668|emb|CAI71775.1| recombinase A [Bradyrhizobium sp. WU425]
 gi|81294670|emb|CAI71776.1| recombinase A [Bradyrhizobium sp. A13]
 gi|81294672|emb|CAI71777.1| recombinase A [Bradyrhizobium sp. VK7]
 gi|81294674|emb|CAI71778.1| recombinase A [Bradyrhizobium sp. W72]
 gi|146740921|emb|CAJ44521.1| recombinase A [Bradyrhizobium sp. BLUH1]
 gi|146741029|emb|CAJ44537.1| recombinase A [Bradyrhizobium sp. Lcamp8]
          Length = 186

 Score =  208 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 138/186 (74%), Positives = 163/186 (87%), Gaps = 1/186 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG++M+LG        +E VSSGSLGLDIALGIGG PKGR+
Sbjct: 2   MDKSKALAAALSQIERQFGKGSVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRV 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 121 GEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180

Query: 190 ISRSKC 195
           I++S  
Sbjct: 181 INKSNT 186


>gi|33087845|gb|AAP93053.1| recombination protein A [Yersinia kristensenii]
          Length = 191

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 128/193 (66%), Positives = 158/193 (81%), Gaps = 2/193 (1%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
            AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPE
Sbjct: 1   AAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPE 58

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI
Sbjct: 59  SSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEI 118

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +
Sbjct: 119 CDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTL 178

Query: 197 LVFINQMRMKIGV 209
           L+FINQ+RMKIGV
Sbjct: 179 LIFINQIRMKIGV 191


>gi|29652288|gb|AAO87805.1| RecA [Listeria monocytogenes]
          Length = 187

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 124/189 (65%), Positives = 157/189 (83%), Gaps = 2/189 (1%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           ++ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGP
Sbjct: 1   IDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK 
Sbjct: 119 IAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKT 178

Query: 196 ILVFINQMR 204
           I +FINQ+R
Sbjct: 179 IAIFINQIR 187


>gi|81294644|emb|CAI71763.1| recombinase A [Bradyrhizobium sp. WSM1735]
 gi|81294648|emb|CAI71765.1| recombinase A [Bradyrhizobium sp. WSM1790]
          Length = 186

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 134/186 (72%), Positives = 163/186 (87%), Gaps = 1/186 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DK+KAL AALSQI+R +GKG++M+LG        +E VSSGSLGLDIALG+GG PKGR+
Sbjct: 2   MDKTKALSAALSQIERQFGKGSVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRV 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGA+D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 121 GEQALEICDTLVRSGAIDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180

Query: 190 ISRSKC 195
           I++S  
Sbjct: 181 INKSNT 186


>gi|223469883|gb|ACM90284.1| RecA [Vibrio parahaemolyticus]
 gi|241993195|gb|ACS74116.1| RecA [Vibrio parahaemolyticus]
          Length = 214

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 150/214 (70%), Positives = 185/214 (86%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD
Sbjct: 1   LGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVD 60

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR+
Sbjct: 61  IDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARM 120

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           +SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+
Sbjct: 121 LSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGA 180

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           IK+ D + GN+TR++VVKNK+A+PFK+    IMY
Sbjct: 181 IKEGDEVVGNETRIRVVKNKIAAPFKEANTQIMY 214


>gi|325650622|emb|CBY89494.1| RecA protein [Rhizobium leguminosarum]
          Length = 175

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 143/176 (81%), Positives = 164/176 (93%), Gaps = 1/176 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 1   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 60  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 120 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 175


>gi|117675807|emb|CAL69174.1| recombinase A [Clavibacter michiganensis subsp. michiganensis]
 gi|117675809|emb|CAL69175.1| recombinase A [Clavibacter michiganensis subsp. nebraskensis]
          Length = 212

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 146/212 (68%), Positives = 174/212 (82%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DMLV
Sbjct: 1   TLTLHAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG++D++VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  +++++  ++FIN
Sbjct: 61  RSGSIDLVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTQTTMIFIN 120

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA 
Sbjct: 121 QLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVGNRTRVKVVKNKMAP 180

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVD 293
           PFKQ EFDI+YG GIS  G LID GV+  IV 
Sbjct: 181 PFKQAEFDILYGTGISREGSLIDFGVEHEIVR 212


>gi|317447062|emb|CBX24360.1| RecA protein [Thiomonas perometabolis]
          Length = 216

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 161/216 (74%), Positives = 192/216 (88%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK GGTCAF+DAEHALD  YA KLGV L +LLISQPDTGEQALEI D LV
Sbjct: 1   TLTLQVIAEMQKLGGTCAFIDAEHALDVQYASKLGVQLPDLLISQPDTGEQALEIVDALV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG+VD+IVIDSVAALTP+AEIEG+MG+SLPG+QARLMSQALRKLT++I R+ C+++FIN
Sbjct: 61  RSGSVDMIVIDSVAALTPKAEIEGEMGDSLPGLQARLMSQALRKLTANIKRTNCLVIFIN 120

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK  + + G++TRVKVVKNK+A 
Sbjct: 121 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKKGEDVIGSETRVKVVKNKVAP 180

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           PFKQ EFDI+YGEG+S  GE++DLGV A +V+KSG+
Sbjct: 181 PFKQAEFDILYGEGVSREGEIVDLGVLAKLVEKSGS 216


>gi|33087827|gb|AAP93044.1| recombination protein A [Yersinia intermedia]
          Length = 190

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 127/192 (66%), Positives = 157/192 (81%), Gaps = 2/192 (1%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
            AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPE
Sbjct: 1   AAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPE 58

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI
Sbjct: 59  SSGKTTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEI 118

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +
Sbjct: 119 CDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTL 178

Query: 197 LVFINQMRMKIG 208
           L+FINQ+RMKIG
Sbjct: 179 LIFINQIRMKIG 190


>gi|29652270|gb|AAO87796.1| RecA [Listeria monocytogenes]
          Length = 186

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 123/188 (65%), Positives = 156/188 (82%), Gaps = 2/188 (1%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           ++ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGP
Sbjct: 1   IDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK 
Sbjct: 119 IAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKT 178

Query: 196 ILVFINQM 203
           I +FINQ+
Sbjct: 179 IAIFINQI 186


>gi|117675777|emb|CAL69159.1| recombinase A [Agromyces cerinus subsp. nitratus]
          Length = 214

 Score =  207 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 151/214 (70%), Positives = 176/214 (82%)

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTL LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI D
Sbjct: 1   GKTTLTLHAIANAQRNGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIAD 60

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           MLVRSG++D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  +S++   ++
Sbjct: 61  MLVRSGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLSQTNTTMI 120

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNK
Sbjct: 121 FINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVGNRTRVKVVKNK 180

Query: 259 MASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           MA PFKQ EFDI+YG GIS  G LID GV  +IV
Sbjct: 181 MAPPFKQAEFDILYGVGISREGSLIDYGVDQAIV 214


>gi|325651139|emb|CBY89391.1| RecA protein [Sinorhizobium meliloti]
          Length = 183

 Score =  207 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 150/184 (81%), Positives = 169/184 (91%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKL +SIS
Sbjct: 120 QALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLXASIS 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|325651091|emb|CBY89367.1| RecA protein [Sinorhizobium medicae]
          Length = 183

 Score =  207 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 150/184 (81%), Positives = 169/184 (91%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+  +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIEXAFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|290795159|gb|ADD64594.1| RecA recombinase [Vibrio sp. SPR145]
          Length = 202

 Score =  207 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 143/204 (70%), Positives = 176/204 (86%), Gaps = 2/204 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA
Sbjct: 1   GSIMKLGDNRTM--DVETISTGSLALDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +Q+ G TCAF+DAEHALD IYA+KLGV++ +LL+SQPDTGEQALEI D L RSGA+D++
Sbjct: 59  AAQRVGKTCAFIDAEHALDPIYAQKLGVNINDLLVSQPDTGEQALEICDALARSGAIDVL 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGV
Sbjct: 119 VIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGV 178

Query: 210 MFGSPETTTGGNALKFYSSVRLDI 233
           MFGSPETTTGGNALKFY+SVRLDI
Sbjct: 179 MFGSPETTTGGNALKFYASVRLDI 202


>gi|223366149|gb|ACM88610.1| RecA [Rhizobium sp. MVP05]
          Length = 182

 Score =  207 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 142/181 (78%), Positives = 162/181 (89%), Gaps = 1/181 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 2   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 61  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRS AVD++V+DSVAALTPRAEIEG+MG  LPG Q RLMSQ LRKL +S
Sbjct: 121 GEQALEITDTLVRSXAVDVLVVDSVAALTPRAEIEGEMGXXLPGXQPRLMSQELRKLXAS 180

Query: 190 I 190
           I
Sbjct: 181 I 181


>gi|25808095|gb|AAN74112.1| RecA [Helicobacter pylori]
          Length = 212

 Score =  207 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 138/212 (65%), Positives = 174/212 (82%), Gaps = 1/212 (0%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+
Sbjct: 1   VEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFI 60

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           DAEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+A
Sbjct: 61  DAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKA 120

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-GVMFGSPETTTGG 220
           EI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKI    +GSPETTTGG
Sbjct: 121 EIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMTGYGSPETTTGG 180

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           NALKFY+SVR+DIRR+ ++K  +   GN+ + 
Sbjct: 181 NALKFYASVRIDIRRIAALKQNEQHIGNRAKA 212


>gi|99866623|gb|ABF67649.1| RecA [Pectobacterium carotovorum]
 gi|99866627|gb|ABF67651.1| RecA [Pectobacterium carotovorum]
 gi|99866633|gb|ABF67654.1| RecA [Pectobacterium carotovorum]
 gi|99866639|gb|ABF67657.1| RecA [Pectobacterium atrosepticum]
 gi|99866657|gb|ABF67666.1| RecA [Pectobacterium carotovorum]
 gi|99866665|gb|ABF67670.1| RecA [Pectobacterium carotovorum]
 gi|99866687|gb|ABF67681.1| RecA [Pectobacterium carotovorum]
          Length = 204

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 145/204 (71%), Positives = 176/204 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD
Sbjct: 1   STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G
Sbjct: 61  PIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+S
Sbjct: 121 DSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRV 252
           VRLDIRR G+IK+ + + G++TRV
Sbjct: 181 VRLDIRRTGAIKEGEEVVGSETRV 204


>gi|300089403|gb|ADJ67853.1| recombination repair protein [Photobacterium jeanii]
          Length = 216

 Score =  207 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 153/215 (71%), Positives = 184/215 (85%)

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTG
Sbjct: 1   EIYGPESSGKTTLTLEAIACAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTG 60

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 61  EQALEICDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 120

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T
Sbjct: 121 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 180

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           R+KVVKNK+A+PFKQ E    +G+G    GELIDL
Sbjct: 181 RIKVVKNKVAAPFKQAETQFFHGQGFYRNGELIDL 215


>gi|241993155|gb|ACS74096.1| RecA [Vibrio parahaemolyticus]
          Length = 214

 Score =  207 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 151/214 (70%), Positives = 185/214 (86%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD
Sbjct: 1   LGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVD 60

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR+
Sbjct: 61  IDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARM 120

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           +SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+
Sbjct: 121 LSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGA 180

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           IK+ D + GN+TR+KVVKNK+A+PFK+    IMY
Sbjct: 181 IKEGDEVLGNETRIKVVKNKIAAPFKEANTQIMY 214


>gi|290795192|gb|ADD64610.1| RecA recombinase [Vibrio cyclitrophicus]
          Length = 200

 Score =  207 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 147/200 (73%), Positives = 174/200 (87%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +QK G TCAFVDAEH
Sbjct: 1   ETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIEG
Sbjct: 61  ALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKF
Sbjct: 121 EMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKF 180

Query: 226 YSSVRLDIRRVGSIKDKDSI 245
           Y+SVRLDIRR G+IKD D +
Sbjct: 181 YASVRLDIRRTGAIKDGDEV 200


>gi|29652180|gb|AAO87751.1| RecA [Listeria monocytogenes]
          Length = 186

 Score =  207 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 124/188 (65%), Positives = 156/188 (82%), Gaps = 2/188 (1%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           + AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPE
Sbjct: 1   DQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPE 58

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI
Sbjct: 59  SSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEI 118

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I
Sbjct: 119 AEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTI 178

Query: 197 LVFINQMR 204
            +FINQ+R
Sbjct: 179 AIFINQIR 186


>gi|325651143|emb|CBY89393.1| RecA protein [Sinorhizobium meliloti]
          Length = 181

 Score =  207 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 149/182 (81%), Positives = 168/182 (92%), Gaps = 1/182 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIY
Sbjct: 1   KALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQA
Sbjct: 60  GPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S
Sbjct: 120 LEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 179

Query: 194 KC 195
            C
Sbjct: 180 NC 181


>gi|29652096|gb|AAO87710.1| RecA [Listeria monocytogenes]
          Length = 189

 Score =  207 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 126/190 (66%), Positives = 158/190 (83%), Gaps = 2/190 (1%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESS
Sbjct: 2   ALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESS 59

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI +
Sbjct: 60  GKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAE 119

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +
Sbjct: 120 ALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAI 179

Query: 199 FINQMRMKIG 208
           FINQ+R K+G
Sbjct: 180 FINQIREKVG 189


>gi|25808097|gb|AAN74113.1| RecA [Helicobacter pylori]
 gi|25808109|gb|AAN74119.1| RecA [Helicobacter pylori]
          Length = 212

 Score =  207 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 140/212 (66%), Positives = 177/212 (83%), Gaps = 1/212 (0%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+
Sbjct: 1   VEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFI 60

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           DAEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+A
Sbjct: 61  DAEHALDVHYAKRLGVDTQNLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKA 120

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGG 220
           EI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGG
Sbjct: 121 EIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGG 180

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           NALKFY+SVR+DIRR+ ++K  +   GN+ + 
Sbjct: 181 NALKFYASVRIDIRRIAALKQNEQHIGNRAKA 212


>gi|45825416|gb|AAS77557.1| RecA protein [Mesorhizobium plurifarium]
          Length = 177

 Score =  207 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 140/178 (78%), Positives = 163/178 (91%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L+AALSQI+R +GKG+IM+LG+     E IE V +GSLGLDIALG+GG P+GRIVEIYGP
Sbjct: 1   LDAALSQIERAFGKGSIMRLGANEQAVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           I D LVRSGA+D++V+DSVAALTPRAEIEG+MG++LPG+QARLMSQALRKLT+SISRS
Sbjct: 120 ICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDALPGLQARLMSQALRKLTASISRS 177


>gi|29651999|gb|AAO87662.1| RecA [Listeria monocytogenes]
 gi|29652101|gb|AAO87712.1| RecA [Listeria monocytogenes]
 gi|29652104|gb|AAO87713.1| RecA [Listeria monocytogenes]
 gi|29652118|gb|AAO87720.1| RecA [Listeria monocytogenes]
 gi|29652142|gb|AAO87732.1| RecA [Listeria monocytogenes]
 gi|29652152|gb|AAO87737.1| RecA [Listeria monocytogenes]
 gi|29652168|gb|AAO87745.1| RecA [Listeria monocytogenes]
 gi|29652172|gb|AAO87747.1| RecA [Listeria monocytogenes]
 gi|29652206|gb|AAO87764.1| RecA [Listeria monocytogenes]
 gi|29652224|gb|AAO87773.1| RecA [Listeria monocytogenes]
 gi|29652228|gb|AAO87775.1| RecA [Listeria monocytogenes]
 gi|29652246|gb|AAO87784.1| RecA [Listeria monocytogenes]
          Length = 194

 Score =  207 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 130/196 (66%), Positives = 163/196 (83%), Gaps = 2/196 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MRMKIGVMFGSPETTT 218
           +R K+GVMFG+PE T 
Sbjct: 179 IREKVGVMFGNPEITP 194


>gi|99866629|gb|ABF67652.1| RecA [Pectobacterium carotovorum]
          Length = 204

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 145/204 (71%), Positives = 176/204 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD
Sbjct: 1   STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G
Sbjct: 61  PIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+S
Sbjct: 121 DSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRV 252
           VRLDIRR G+IK+ + + G++TRV
Sbjct: 181 VRLDIRRTGAIKEGEKVVGSETRV 204


>gi|323339162|gb|ADX41570.1| DNA recombinase [Mesorhizobium sp. TM1]
          Length = 171

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 134/171 (78%), Positives = 157/171 (91%), Gaps = 1/171 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 2   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 61  IEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMS
Sbjct: 121 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMS 171


>gi|110003029|emb|CAJ57801.1| recombinase A [Bradyrhizobium japonicum]
          Length = 183

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 136/184 (73%), Positives = 162/184 (88%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKAL AALSQI+R +GKG++M+LG        +E VSSGSLGLDIALGIGG PKGR+VE
Sbjct: 1   KSKALAAALSQIERQFGKGSVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI+
Sbjct: 120 QALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASIN 179

Query: 192 RSKC 195
           +S  
Sbjct: 180 KSNT 183


>gi|25808141|gb|AAN74135.1| RecA [Helicobacter pylori]
          Length = 212

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 141/212 (66%), Positives = 177/212 (83%), Gaps = 1/212 (0%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+
Sbjct: 1   VEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFI 60

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           DAEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+A
Sbjct: 61  DAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKA 120

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGG 220
           EI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGG
Sbjct: 121 EIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGG 180

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           NALKFY+SVR+DIRR+ S+K  +   GN+ + 
Sbjct: 181 NALKFYASVRIDIRRIASLKQNEQHIGNRAKA 212


>gi|169883217|gb|ACA97518.1| recombination protein RecA [Bradyrhizobium genosp. SA-2]
          Length = 187

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 139/185 (75%), Positives = 163/185 (88%), Gaps = 1/185 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DKSKAL AALSQI+R +GKG++M+LG        IE VSSGSLGLDIALGIGG P
Sbjct: 4   EGSSMDKSKALAAALSQIERQFGKGSVMKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLP 62

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLIS
Sbjct: 63  KGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLIS 122

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRK
Sbjct: 123 QPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRK 182

Query: 186 LTSSI 190
           LT+SI
Sbjct: 183 LTASI 187


>gi|29651991|gb|AAO87658.1| RecA [Listeria monocytogenes]
 gi|29652094|gb|AAO87709.1| RecA [Listeria monocytogenes]
          Length = 194

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 130/195 (66%), Positives = 163/195 (83%), Gaps = 2/195 (1%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
            QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGK
Sbjct: 1   KQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGK 58

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + L
Sbjct: 59  TTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEAL 118

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FI
Sbjct: 119 VRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFI 178

Query: 201 NQMRMKIGVMFGSPE 215
           NQ+R K+GVMFG+PE
Sbjct: 179 NQIREKVGVMFGNPE 193


>gi|223366139|gb|ACM88605.1| RecA [Rhizobium leguminosarum]
          Length = 182

 Score =  206 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 143/179 (79%), Positives = 165/179 (92%), Gaps = 1/179 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDK K LEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 5   VDKIKXLEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 64  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+
Sbjct: 124 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTA 182


>gi|169883189|gb|ACA97504.1| recombination protein RecA [Bradyrhizobium genosp. SA-1]
 gi|169883191|gb|ACA97505.1| recombination protein RecA [Bradyrhizobium genosp. SA-1]
 gi|169883193|gb|ACA97506.1| recombination protein RecA [Bradyrhizobium genosp. SA-1]
 gi|169883195|gb|ACA97507.1| recombination protein RecA [Bradyrhizobium genosp. SA-1]
 gi|169883197|gb|ACA97508.1| recombination protein RecA [Bradyrhizobium genosp. SA-1]
 gi|169883201|gb|ACA97510.1| recombination protein RecA [Bradyrhizobium yuanmingense]
 gi|169883203|gb|ACA97511.1| recombination protein RecA [Bradyrhizobium yuanmingense]
 gi|169883209|gb|ACA97514.1| recombination protein RecA [Bradyrhizobium yuanmingense]
 gi|169883211|gb|ACA97515.1| recombination protein RecA [Bradyrhizobium yuanmingense]
 gi|169883213|gb|ACA97516.1| recombination protein RecA [Bradyrhizobium yuanmingense]
          Length = 187

 Score =  206 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 139/185 (75%), Positives = 163/185 (88%), Gaps = 1/185 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DKSKAL AALSQI+R +GKG++M+LG        IE VSSGSLGLDIALGIGG P
Sbjct: 4   EGSSMDKSKALAAALSQIERQFGKGSVMKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLP 62

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLIS
Sbjct: 63  KGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLIS 122

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRK
Sbjct: 123 QPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRK 182

Query: 186 LTSSI 190
           LT+SI
Sbjct: 183 LTASI 187


>gi|223366147|gb|ACM88609.1| RecA [Rhizobium sp. MVP01]
          Length = 185

 Score =  206 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 147/185 (79%), Positives = 168/185 (90%), Gaps = 1/185 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R  GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P
Sbjct: 1   EDKSVDKSKALEAALSQIERSXGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLP 59

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 60  RGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 119

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 120 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 179

Query: 186 LTSSI 190
           L +SI
Sbjct: 180 LXASI 184


>gi|25808121|gb|AAN74125.1| RecA [Helicobacter pylori]
 gi|25808139|gb|AAN74134.1| RecA [Helicobacter pylori]
 gi|25808143|gb|AAN74136.1| RecA [Helicobacter pylori]
 gi|25808153|gb|AAN74141.1| RecA [Helicobacter pylori]
          Length = 212

 Score =  206 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 140/212 (66%), Positives = 177/212 (83%), Gaps = 1/212 (0%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+
Sbjct: 1   VEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFI 60

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           DAEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+A
Sbjct: 61  DAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKA 120

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGG 220
           EI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGG
Sbjct: 121 EIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGG 180

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           NALKFY+SVR+DIRR+ ++K  +   GN+ + 
Sbjct: 181 NALKFYASVRIDIRRIAALKQNEQHIGNRAKA 212


>gi|9909931|emb|CAC04390.1| RecA protein [Rhizobium leguminosarum]
 gi|45825394|gb|AAS77546.1| RecA protein [Rhizobium leguminosarum]
          Length = 177

 Score =  206 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 143/178 (80%), Positives = 166/178 (93%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGP
Sbjct: 1   LEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 ITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 177


>gi|226973227|gb|ACO95152.1| recombinase A [Bradyrhizobium sp. RSA104]
          Length = 183

 Score =  206 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 131/183 (71%), Positives = 161/183 (87%), Gaps = 1/183 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG        IE +SSGSLGLDIALG+GG P+GR+VEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSM-DIETISSGSLGLDIALGVGGLPRGRVVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 180

Query: 198 VFI 200
           +FI
Sbjct: 181 IFI 183


>gi|225008762|gb|ACN78929.1| RecA [Rhizobium sp. HTP01]
          Length = 178

 Score =  206 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 143/179 (79%), Positives = 165/179 (92%), Gaps = 1/179 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           ALEAAL QI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRIVEIYG
Sbjct: 1   ALEAALXQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQAL
Sbjct: 60  PESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           EITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALR LT+SIS+S
Sbjct: 120 EITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRXLTASISKS 178


>gi|146740925|emb|CAJ44523.1| recombinase A [Bradyrhizobium sp. C4]
          Length = 186

 Score =  206 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 136/186 (73%), Positives = 163/186 (87%), Gaps = 1/186 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSK L AALSQI+R +GKG++M+LG        +E VSSGSLGLDIALGIGG PKGR+
Sbjct: 2   MDKSKPLAAALSQIERQFGKGSVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRV 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 121 GEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180

Query: 190 ISRSKC 195
           I++S  
Sbjct: 181 INKSNT 186


>gi|68637334|emb|CAF21798.1| recombinase A [Lactobacillus ruminis]
          Length = 200

 Score =  206 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 135/199 (67%), Positives = 167/199 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  V +GSL LD ALG+GGFP+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   ISTVPTGSLSLDEALGVGGFPRGRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD  YA+ LGV++  LL+SQPDTGEQ LEI D LV SGA+DI+V+DSVAAL PRAEIE
Sbjct: 62  NALDPAYAQALGVNIDELLLSQPDTGEQGLEICDALVSSGAIDIVVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GEMGDTHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKDKD 243
           FYS+VRL++RR   IKD  
Sbjct: 182 FYSTVRLEVRRAEQIKDGS 200


>gi|198385753|gb|ACH86220.1| RecA [Sinorhizobium medicae]
          Length = 181

 Score =  206 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 149/180 (82%), Positives = 167/180 (92%), Gaps = 1/180 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERAFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S
Sbjct: 122 GEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 181


>gi|325650928|emb|CBY89647.1| RecA protein [Rhizobium sp. R-46234=t495]
          Length = 176

 Score =  206 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 146/177 (82%), Positives = 164/177 (92%), Gaps = 1/177 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           QALEITD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+
Sbjct: 120 QALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTA 176


>gi|169883177|gb|ACA97498.1| recombination protein RecA [Bradyrhizobium genosp. SA-3]
 gi|169883179|gb|ACA97499.1| recombination protein RecA [Bradyrhizobium genosp. SA-3]
 gi|169883181|gb|ACA97500.1| recombination protein RecA [Bradyrhizobium genosp. SA-4 str. CB756]
 gi|169883183|gb|ACA97501.1| recombination protein RecA [Bradyrhizobium genosp. SA-3]
 gi|169883185|gb|ACA97502.1| recombination protein RecA [Bradyrhizobium genosp. SA-3]
 gi|169883187|gb|ACA97503.1| recombination protein RecA [Bradyrhizobium genosp. SA-3]
 gi|169883199|gb|ACA97509.1| recombination protein RecA [Bradyrhizobium genosp. SA-3]
 gi|169883207|gb|ACA97513.1| recombination protein RecA [Bradyrhizobium yuanmingense]
 gi|169883215|gb|ACA97517.1| recombination protein RecA [Bradyrhizobium genosp. SA-3]
 gi|169883219|gb|ACA97519.1| recombination protein RecA [Bradyrhizobium genosp. SA-3]
          Length = 187

 Score =  206 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 139/185 (75%), Positives = 164/185 (88%), Gaps = 1/185 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DKSKAL AALSQI+R +GKG++M+LG +      IE VSSGSLGLDIALGIGG P
Sbjct: 4   EGSSMDKSKALAAALSQIERQFGKGSVMKLG-KSDRSMDIEAVSSGSLGLDIALGIGGLP 62

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLIS
Sbjct: 63  KGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLIS 122

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRK
Sbjct: 123 QPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRK 182

Query: 186 LTSSI 190
           LT+SI
Sbjct: 183 LTASI 187


>gi|99866635|gb|ABF67655.1| RecA [Pectobacterium carotovorum]
          Length = 204

 Score =  206 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 145/204 (71%), Positives = 176/204 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD
Sbjct: 1   STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G
Sbjct: 61  PIYAKKLGVDIDNLLCSQPDTGEQALEIXDALTRSGAVDVIIVDSVAALTPKAEIEGEIG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+S
Sbjct: 121 DSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRV 252
           VRLDIRR G+IK+ + + G++TRV
Sbjct: 181 VRLDIRRTGAIKEGEEVVGSETRV 204


>gi|25808133|gb|AAN74131.1| RecA [Helicobacter pylori]
 gi|25808163|gb|AAN74146.1| RecA [Helicobacter pylori]
 gi|25808165|gb|AAN74147.1| RecA [Helicobacter pylori]
 gi|25808167|gb|AAN74148.1| RecA [Helicobacter pylori]
 gi|25808169|gb|AAN74149.1| RecA [Helicobacter pylori]
 gi|25808171|gb|AAN74150.1| RecA [Helicobacter pylori]
 gi|25808173|gb|AAN74151.1| RecA [Helicobacter pylori]
 gi|25808177|gb|AAN74153.1| RecA [Helicobacter pylori]
 gi|25808179|gb|AAN74154.1| RecA [Helicobacter pylori]
 gi|25808181|gb|AAN74155.1| RecA [Helicobacter pylori]
 gi|25808183|gb|AAN74156.1| RecA [Helicobacter pylori]
 gi|25808185|gb|AAN74157.1| RecA [Helicobacter pylori]
          Length = 212

 Score =  206 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 140/212 (66%), Positives = 177/212 (83%), Gaps = 1/212 (0%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+
Sbjct: 1   VEKIDSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFI 60

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           DAEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+A
Sbjct: 61  DAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKA 120

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGG 220
           EI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGG
Sbjct: 121 EIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGG 180

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           NALKFY+SVR+DIRR+ ++K  +   GN+ + 
Sbjct: 181 NALKFYASVRIDIRRIAALKQNEQHIGNRAKA 212


>gi|89145044|emb|CAJ57530.1| recombinase A [Microbacterium resistens]
          Length = 207

 Score =  206 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 145/207 (70%), Positives = 168/207 (81%)

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
             Q+ GG  AFVDAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DML+RSGA+D++
Sbjct: 1   NVQRAGGIAAFVDAEHALDPEYAKKLGVDIDQLLVSQPDTGEQALEIADMLIRSGAIDLV 60

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  ++++K   +FINQ+R KIGV
Sbjct: 61  VIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTKTTAIFINQLREKIGV 120

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
            FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA PFKQ EFD
Sbjct: 121 FFGSPETTAGGKALKFYASVRLDIRRIETLKDGSEAVGNRTRVKVVKNKMAPPFKQAEFD 180

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSG 296
           I+YG GIS  G LID GV   IV KSG
Sbjct: 181 ILYGTGISREGSLIDFGVDHGIVKKSG 207


>gi|331029411|gb|AEC49855.1| recombinase A [Bradyrhizobium sp. SEMIA 6002]
 gi|331029413|gb|AEC49856.1| recombinase A [Bradyrhizobium sp. SEMIA 6144]
          Length = 185

 Score =  206 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 139/185 (75%), Positives = 164/185 (88%), Gaps = 1/185 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DKSKAL AALSQI+R +GKG++M+LG +      IE VSSGSLGLDIALGIGG P
Sbjct: 2   EGSSMDKSKALAAALSQIERQFGKGSVMKLG-KSDRSMDIEAVSSGSLGLDIALGIGGLP 60

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLIS
Sbjct: 61  KGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLIS 120

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRK
Sbjct: 121 QPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRK 180

Query: 186 LTSSI 190
           LT+SI
Sbjct: 181 LTASI 185


>gi|25808081|gb|AAN74105.1| RecA [Helicobacter pylori]
 gi|25808091|gb|AAN74110.1| RecA [Helicobacter pylori]
 gi|25808107|gb|AAN74118.1| RecA [Helicobacter pylori]
 gi|25808147|gb|AAN74138.1| RecA [Helicobacter pylori]
 gi|25808149|gb|AAN74139.1| RecA [Helicobacter pylori]
          Length = 212

 Score =  206 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 136/212 (64%), Positives = 173/212 (81%), Gaps = 1/212 (0%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+
Sbjct: 1   VEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFI 60

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           DAEHALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+A
Sbjct: 61  DAEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKA 120

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-GVMFGSPETTTGG 220
           EI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKI    +GSPETTTGG
Sbjct: 121 EIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMTGYGSPETTTGG 180

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           NALKFY+SVR+DIRR+ ++K  +   GN+ + 
Sbjct: 181 NALKFYASVRIDIRRIAALKQNEQHIGNRAKA 212


>gi|241993183|gb|ACS74110.1| RecA [Vibrio parahaemolyticus]
          Length = 214

 Score =  206 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 149/214 (69%), Positives = 185/214 (86%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD
Sbjct: 1   LGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVD 60

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR+
Sbjct: 61  IDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARM 120

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           +SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+
Sbjct: 121 LSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGA 180

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           IK+ D + GN+TR++VVKN++A+PFK+    IMY
Sbjct: 181 IKEDDEVVGNETRIRVVKNQIAAPFKEANTQIMY 214


>gi|89145048|emb|CAJ57532.1| recombinase A [Microbacterium schleiferi]
          Length = 208

 Score =  206 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 145/208 (69%), Positives = 170/208 (81%)

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
             QK GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DML+RSGA+D++
Sbjct: 1   NVQKAGGIAAFIDAEHALDPDYAQKLGVDIDQLLVSQPDTGEQALEIADMLIRSGAIDLV 60

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  ++++K   +FINQ+R KIGV
Sbjct: 61  VIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTKTTAIFINQLREKIGV 120

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
            FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA PFKQ EFD
Sbjct: 121 FFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVGNRTRVKVVKNKMAPPFKQAEFD 180

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGA 297
           I+YG GIS  G LID GV+  IV KSGA
Sbjct: 181 ILYGTGISREGSLIDFGVEHGIVKKSGA 208


>gi|25808119|gb|AAN74124.1| RecA [Helicobacter pylori]
          Length = 212

 Score =  206 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 141/212 (66%), Positives = 177/212 (83%), Gaps = 1/212 (0%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+
Sbjct: 1   VEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFI 60

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           DAEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+A
Sbjct: 61  DAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKA 120

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGG 220
           EI+GDMG+   G+QARLMS ALRK+T  + +    LVFINQ+RMKIG+M +GSPETTTGG
Sbjct: 121 EIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMMGYGSPETTTGG 180

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           NALKFY+SVR+DIRR+ ++K  +   GN+ + 
Sbjct: 181 NALKFYASVRIDIRRIAALKQNEQHIGNRAKA 212


>gi|169883205|gb|ACA97512.1| recombination protein RecA [Bradyrhizobium elkanii]
          Length = 187

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 136/185 (73%), Positives = 162/185 (87%), Gaps = 1/185 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DKSKAL AALSQI+R +GKG++M+LG        +E VSSGSLGLDIALG+GG P
Sbjct: 4   EGSSMDKSKALSAALSQIERQFGKGSVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLP 62

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLIS
Sbjct: 63  KGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLIS 122

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRK
Sbjct: 123 QPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRK 182

Query: 186 LTSSI 190
           LT+SI
Sbjct: 183 LTASI 187


>gi|45825418|gb|AAS77558.1| RecA protein [Mesorhizobium chacoense]
          Length = 177

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 140/178 (78%), Positives = 164/178 (92%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L+AALSQI+R +GKG+IM+LG+   + E I  VS+GSLGLDIALG+GG P+GRI+EIYGP
Sbjct: 1   LDAALSQIERAFGKGSIMRLGANEQVVE-IGTVSTGSLGLDIALGVGGLPRGRIIEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           I D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS
Sbjct: 120 ICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRS 177


>gi|325651185|emb|CBY89414.1| RecA protein [Mesorhizobium sp. R-45834]
          Length = 173

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 135/172 (78%), Positives = 157/172 (91%), Gaps = 1/172 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 2   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           GEQALEI D LVRSGA+D++V+DSVAALTP AEIEG+MG+SLPG+QARLMSQ
Sbjct: 121 GEQALEICDTLVRSGAIDVLVVDSVAALTPXAEIEGEMGDSLPGLQARLMSQ 172


>gi|297528267|gb|ADI46169.1| recombination protein A [Rhizobium sp. CCBAU 65141]
          Length = 173

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 139/172 (80%), Positives = 160/172 (93%), Gaps = 1/172 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQ
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQ 173


>gi|25808175|gb|AAN74152.1| RecA [Helicobacter pylori]
 gi|25808191|gb|AAN74160.1| RecA [Helicobacter pylori]
          Length = 212

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 141/212 (66%), Positives = 177/212 (83%), Gaps = 1/212 (0%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+
Sbjct: 1   VEKIDSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFI 60

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           DAEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+A
Sbjct: 61  DAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKA 120

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGG 220
           EI+GDMG+   G+QARLMS ALRK+T  + +    LVFINQ+RMKIG+M +GSPETTTGG
Sbjct: 121 EIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMMGYGSPETTTGG 180

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           NALKFY+SVR+DIRR+ ++K  +   GN+ + 
Sbjct: 181 NALKFYASVRIDIRRIAALKQNEQHIGNRAKA 212


>gi|118767329|gb|ABL11500.1| RecA [Rhizobium leguminosarum bv. trifolii]
          Length = 178

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 143/179 (79%), Positives = 165/179 (92%), Gaps = 1/179 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGP
Sbjct: 1   LEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           ITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS S 
Sbjct: 120 ITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISXSN 178


>gi|291246103|gb|ADD85178.1| RecA [Borrelia recurrentis]
          Length = 219

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 133/218 (61%), Positives = 183/218 (83%), Gaps = 1/218 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+++++G    + + +E + SG + LD A+GIGG+P+GR+VEI+GPESSGKT
Sbjct: 3   QIEKDFGKGSLIKMGE-SPVGKYLESIPSGFILLDEAIGIGGYPRGRVVEIFGPESSGKT 61

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QKTGG  AF+DAEHALD +YAR LGV++  L +SQPDTGEQAL+I + L+
Sbjct: 62  TLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQPDTGEQALDIAEYLI 121

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG VD+IV+DSVAAL P+AEI+G+MG++  G+QARLMS+ALRK+T+ +S+S   ++FIN
Sbjct: 122 RSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGLQARLMSKALRKITAILSKSNACIMFIN 181

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           Q+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V  +
Sbjct: 182 QIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKVEQV 219


>gi|156902072|gb|ABU96829.1| RecA protein [Vibrio cholerae]
          Length = 214

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 148/214 (69%), Positives = 185/214 (86%)

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQ
Sbjct: 1   GRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQ 60

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKL
Sbjct: 61  PDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKL 120

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + 
Sbjct: 121 TGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVV 180

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           GN+TR+KVVKNK+A+PFK+    IMYG+G +  G
Sbjct: 181 GNETRIKVVKNKIAAPFKEANTQIMYGQGFNREG 214


>gi|331029407|gb|AEC49853.1| recombinase A [Bradyrhizobium elkanii]
          Length = 188

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 138/187 (73%), Positives = 164/187 (87%), Gaps = 1/187 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DKSKAL AALSQI+R +GKG++M+LG        +E VSSGSLGLDIALG+GG P
Sbjct: 3   EGSSMDKSKALXAALSQIERQFGKGSVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLP 61

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLIS
Sbjct: 62  KGRIVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLIS 121

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRK
Sbjct: 122 QPDTGEQALEIADTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRK 181

Query: 186 LTSSISR 192
           LT+SI++
Sbjct: 182 LTASINK 188


>gi|291246131|gb|ADD85190.1| RecA [Borrelia recurrentis]
          Length = 224

 Score =  205 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 134/221 (60%), Positives = 184/221 (83%), Gaps = 1/221 (0%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           A  QI++ +GKG+++++G    + + +E + SG + LD A+GIGG+P+GR+VEI+GPESS
Sbjct: 1   ARVQIEKDFGKGSLIKMGE-SPVGKYLESIPSGFILLDEAIGIGGYPRGRVVEIFGPESS 59

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTL L  IA+ QKTGG  AF+DAEHALD +YAR LGV++  L +SQPDTGEQAL+I +
Sbjct: 60  GKTTLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQPDTGEQALDIAE 119

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            L+RSG VD+IV+DSVAAL P+AEI+G+MG++  G+QARLMS+ALRK+T+ +S+S   ++
Sbjct: 120 YLIRSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGLQARLMSKALRKITAILSKSNACIM 179

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V  +
Sbjct: 180 FINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKVEQV 220


>gi|29652078|gb|AAO87701.1| RecA [Listeria monocytogenes]
 gi|29652106|gb|AAO87714.1| RecA [Listeria monocytogenes]
          Length = 191

 Score =  205 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 129/193 (66%), Positives = 162/193 (83%), Gaps = 2/193 (1%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKT
Sbjct: 1   QIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKT 58

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LV
Sbjct: 59  TVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALV 118

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FIN
Sbjct: 119 RSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFIN 178

Query: 202 QMRMKIGVMFGSP 214
           Q+R K+GVMFG+P
Sbjct: 179 QIREKVGVMFGNP 191


>gi|25808103|gb|AAN74116.1| RecA [Helicobacter pylori]
          Length = 212

 Score =  205 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 138/212 (65%), Positives = 176/212 (83%), Gaps = 1/212 (0%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+
Sbjct: 1   VEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFI 60

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           DAEHALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+A
Sbjct: 61  DAEHALDVYYAKRLGVDTQNLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKA 120

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGG 220
           EI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGG
Sbjct: 121 EIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGG 180

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           NALKFY+SVR+DIRR+ ++K  +   GN+ + 
Sbjct: 181 NALKFYASVRIDIRRIAALKQNEQHIGNRAKA 212


>gi|97997|pir||PC1108 recombination protein recA - Streptococcus mutans (fragment)
          Length = 231

 Score =  205 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 141/231 (61%), Positives = 180/231 (77%), Gaps = 4/231 (1%)

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTT+ALH  AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+GEQ 
Sbjct: 1   GPESSGKTTVALHAAAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQG 60

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G S  G+QAR+MSQA+RKL++SI+++
Sbjct: 61  LEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGNSHVGLQARMMSQAMRKLSASINKT 120

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQ 249
           K I +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+R    IK     KDS  G +
Sbjct: 121 KTIAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRGNTQIKGTGEQKDSNIGKE 180

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           T++KVVKNK+A PFK+   +I+YGEGIS  GEL+ +     I+ K GAW++
Sbjct: 181 TKIKVVKNKVAPPFKEAFVEIIYGEGISRTGELVKIASDLGIIQKRGAWYT 231


>gi|89145179|emb|CAJ57525.1| recombinase A [Microbacterium laevaniformans]
          Length = 211

 Score =  205 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 145/211 (68%), Positives = 173/211 (81%)

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA  Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DMLVRSGA+
Sbjct: 1   AIANVQRAGGIAAFIDAEHALDPDYAQKLGVDIDQLLVSQPDTGEQALEIADMLVRSGAI 60

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  ++++   ++FINQ+R K
Sbjct: 61  DLVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLREK 120

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA PFKQ 
Sbjct: 121 IGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVGNRTRVKVVKNKMAPPFKQA 180

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
           EFDI+YG GIS  G LID GV+ ++V KSGA
Sbjct: 181 EFDILYGTGISREGSLIDFGVEHALVKKSGA 211


>gi|25808083|gb|AAN74106.1| RecA [Helicobacter pylori]
          Length = 212

 Score =  205 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 140/212 (66%), Positives = 176/212 (83%), Gaps = 1/212 (0%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+
Sbjct: 1   VEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFI 60

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           DAEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+A
Sbjct: 61  DAEHALDVHYAKRLGVDTQNLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKA 120

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGG 220
           EI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGG
Sbjct: 121 EIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGG 180

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           NALKFY+SVR+DIRR+  +K  +   GN+ + 
Sbjct: 181 NALKFYASVRIDIRRIAGLKQNEQHIGNRAKA 212


>gi|58415441|emb|CAH57135.1| recA protein [Vibrio cyclitrophicus]
          Length = 204

 Score =  205 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 151/204 (74%), Positives = 178/204 (87%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           L LDIALG GG P GRIVE+YGPESSGKTTL L  IA +QK G TCAFVDAEHALD IYA
Sbjct: 1   LSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           +KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIEG+MG+S  
Sbjct: 61  QKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGDSHM 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD
Sbjct: 121 GLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 180

Query: 233 IRRVGSIKDKDSITGNQTRVKVVK 256
           IRR G+IKD D + GN+TR+KVVK
Sbjct: 181 IRRTGAIKDGDEVVGNETRIKVVK 204


>gi|25808151|gb|AAN74140.1| RecA [Helicobacter pylori]
          Length = 212

 Score =  205 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 139/212 (65%), Positives = 176/212 (83%), Gaps = 1/212 (0%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+
Sbjct: 1   VEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFI 60

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           DAEHALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+A
Sbjct: 61  DAEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKA 120

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGG 220
           EI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGG
Sbjct: 121 EIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGG 180

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           NALKFY+SVR+DIRR+ S+K  +   GN+ + 
Sbjct: 181 NALKFYASVRIDIRRIASLKQNEQHIGNRAKA 212


>gi|89145181|emb|CAJ57526.1| recombinase A [Microbacterium luteolum]
          Length = 209

 Score =  205 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 147/209 (70%), Positives = 171/209 (81%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ GG  AF+DAEHALD  YA KLGVD+  LL+SQPDTGEQALEI DMLVRSGA+D
Sbjct: 1   IANAQRAGGIAAFIDAEHALDPDYAAKLGVDIDALLVSQPDTGEQALEIADMLVRSGAID 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  ++++   ++FINQ+R KI
Sbjct: 61  LIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLREKI 120

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA PFKQ E
Sbjct: 121 GVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVGNRTRVKVVKNKMAPPFKQAE 180

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSG 296
           FDI+YG GIS  G LID GV+  IV KSG
Sbjct: 181 FDILYGVGISREGSLIDFGVEHGIVKKSG 209


>gi|325651083|emb|CBY89363.1| RecA protein [Sinorhizobium medicae]
          Length = 182

 Score =  205 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 149/183 (81%), Positives = 168/183 (91%), Gaps = 1/183 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKALEAALSQI+  +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVEI
Sbjct: 1   SKALEAALSQIEXAFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+
Sbjct: 120 ALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISK 179

Query: 193 SKC 195
           S C
Sbjct: 180 SNC 182


>gi|169883221|gb|ACA97520.1| recombination protein RecA [Bradyrhizobium genosp. SA-3]
          Length = 187

 Score =  205 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 140/185 (75%), Positives = 163/185 (88%), Gaps = 1/185 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E + +DKSKAL AALSQI+R +GKG++M+LG        IE VSSGSLGLDIALGIGG P
Sbjct: 4   EGSSMDKSKALAAALSQIERQFGKGSVMKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLP 62

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLIS
Sbjct: 63  KGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLIS 122

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRK
Sbjct: 123 QPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRK 182

Query: 186 LTSSI 190
           LT+SI
Sbjct: 183 LTASI 187


>gi|146740923|emb|CAJ44522.1| recombinase A [Bradyrhizobium sp. BLUT1]
          Length = 186

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 138/186 (74%), Positives = 162/186 (87%), Gaps = 1/186 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           +DKSKAL AALSQI+R +GKG +M+LG        +E VSSGSLGLDIALGIGG PKGR+
Sbjct: 2   MDKSKALAAALSQIERQFGKGLVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRV 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S
Sbjct: 121 GEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180

Query: 190 ISRSKC 195
           I++S  
Sbjct: 181 INKSNT 186


>gi|115498185|gb|ABI98672.1| RecA [Mesorhizobium sp. CCBAU 13090]
          Length = 183

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 142/184 (77%), Positives = 168/184 (91%), Gaps = 1/184 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALH
Sbjct: 1   FGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+
Sbjct: 60  TVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTPRAEIEG+MG+S PG+QARLMSQALRKLT+SISRS  +++FINQ+RMK
Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSPPGLQARLMSQALRKLTASISRSNTMVIFINQIRMK 179

Query: 207 IGVM 210
           IGVM
Sbjct: 180 IGVM 183


>gi|29652039|gb|AAO87682.1| RecA [Listeria monocytogenes]
 gi|29652112|gb|AAO87717.1| RecA [Listeria monocytogenes]
 gi|29652138|gb|AAO87730.1| RecA [Listeria monocytogenes]
 gi|29652208|gb|AAO87765.1| RecA [Listeria monocytogenes]
 gi|29652250|gb|AAO87786.1| RecA [Listeria monocytogenes]
          Length = 193

 Score =  205 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 130/195 (66%), Positives = 163/195 (83%), Gaps = 2/195 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MRMKIGVMFGSPETT 217
           +R K+GVMFG+PE T
Sbjct: 179 IREKVGVMFGNPEIT 193


>gi|118767319|gb|ABL11495.1| RecA [Rhizobium sp. PEPSM13]
          Length = 176

 Score =  205 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 144/176 (81%), Positives = 164/176 (93%), Gaps = 1/176 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           ALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG PKGRI+EIYG
Sbjct: 1   ALEAALSQIERSFGKGSIMKLGSNENVIE-IETISTGSLGLDIALGVGGLPKGRIIEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQAL
Sbjct: 60  PESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SI
Sbjct: 120 EITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASI 175


>gi|297528259|gb|ADI46165.1| recombination protein A [Rhizobium sp. CCBAU 31063]
          Length = 182

 Score =  205 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 144/180 (80%), Positives = 163/180 (90%), Gaps = 1/180 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG P
Sbjct: 4   EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLP 62

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 63  KGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 122

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQ LRK
Sbjct: 123 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQGLRK 182


>gi|25808193|gb|AAN74161.1| RecA [Helicobacter pylori]
          Length = 212

 Score =  205 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 136/210 (64%), Positives = 172/210 (81%), Gaps = 1/210 (0%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DA
Sbjct: 3   KIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI
Sbjct: 63  EHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-GVMFGSPETTTGGNA 222
           +GDMG+   G+QARLMS ALRK+T  + +    LVFINQ+RMKI    +GSPETTTGGNA
Sbjct: 123 DGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMTGYGSPETTTGGNA 182

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           LKFY+SVR+DIRR+ ++K  +   GN+ + 
Sbjct: 183 LKFYASVRIDIRRIAALKQNEQHIGNRAKA 212


>gi|291246092|gb|ADD85174.1| RecA [Borrelia recurrentis]
          Length = 221

 Score =  205 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 133/218 (61%), Positives = 183/218 (83%), Gaps = 1/218 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+++++G    + + +E + SG + LD A+GIGG+P+GR+VEI+GPESSGKT
Sbjct: 1   QIEKDFGKGSLIKMGE-SPVGKYLESIPSGFILLDEAIGIGGYPRGRVVEIFGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QKTGG  AF+DAEHALD +YAR LGV++  L +SQPDTGEQAL+I + L+
Sbjct: 60  TLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQPDTGEQALDIAEYLI 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG VD+IV+DSVAAL P+AEI+G+MG++  G+QARLMS+ALRK+T+ +S+S   ++FIN
Sbjct: 120 RSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGLQARLMSKALRKITAILSKSNACIMFIN 179

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           Q+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V  +
Sbjct: 180 QIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKVEQV 217


>gi|251762817|gb|ACT15366.1| RecA [Rhizobium sp. LXD30]
          Length = 181

 Score =  205 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 146/179 (81%), Positives = 163/179 (91%), Gaps = 1/179 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LGS  +I E IE VS+GSL LDIALGIGG P
Sbjct: 4   EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLP 62

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 63  KGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 122

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALR
Sbjct: 123 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALR 181


>gi|25808087|gb|AAN74108.1| RecA [Helicobacter pylori]
 gi|25808089|gb|AAN74109.1| RecA [Helicobacter pylori]
 gi|25808093|gb|AAN74111.1| RecA [Helicobacter pylori]
 gi|25808115|gb|AAN74122.1| RecA [Helicobacter pylori]
 gi|25808125|gb|AAN74127.1| RecA [Helicobacter pylori]
 gi|25808155|gb|AAN74142.1| RecA [Helicobacter pylori]
          Length = 212

 Score =  205 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 138/212 (65%), Positives = 176/212 (83%), Gaps = 1/212 (0%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+
Sbjct: 1   VEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFI 60

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           DAEHALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+A
Sbjct: 61  DAEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKA 120

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGG 220
           EI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGG
Sbjct: 121 EIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGG 180

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           NALKFY+SVR+DIRR+ ++K  +   GN+ + 
Sbjct: 181 NALKFYASVRIDIRRIAALKQNEQHIGNRAKA 212


>gi|25808145|gb|AAN74137.1| RecA [Helicobacter pylori]
          Length = 212

 Score =  205 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 139/212 (65%), Positives = 176/212 (83%), Gaps = 1/212 (0%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG C F+
Sbjct: 1   VEKIDSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCTFI 60

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           DAEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+A
Sbjct: 61  DAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKA 120

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGG 220
           EI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGG
Sbjct: 121 EIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGG 180

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           NALKFY+SVR+DIRR+ ++K  +   GN+ + 
Sbjct: 181 NALKFYASVRIDIRRIAALKQNEQHIGNRAKA 212


>gi|25808129|gb|AAN74129.1| RecA [Helicobacter pylori]
          Length = 209

 Score =  205 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 141/209 (67%), Positives = 176/209 (84%), Gaps = 1/209 (0%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAE
Sbjct: 1   IDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+
Sbjct: 61  HALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNAL 223
           GDMG+   G+QARLMS ALRK+T  + +    LVFINQ+RMKIG+M +GSPETTTGGNAL
Sbjct: 121 GDMGDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMMGYGSPETTTGGNAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           KFY+SVR+DIRR+ S+K  +   GN+ + 
Sbjct: 181 KFYASVRIDIRRIASLKQNEQHIGNRAKA 209


>gi|268308923|gb|ACY95422.1| recombination protein A [Rhizobium sp. CCBAU 23084]
          Length = 181

 Score =  205 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 148/180 (82%), Positives = 164/180 (91%), Gaps = 1/180 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LGS  +I E IE VS+GSL LDIALGIGG P
Sbjct: 3   EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLP 61

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 62  KGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 121

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 122 QPDTGEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 181


>gi|217037930|gb|ACJ76433.1| RecA [Bradyrhizobium sp. STM 3569]
          Length = 179

 Score =  205 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 137/180 (76%), Positives = 160/180 (88%), Gaps = 1/180 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKAL AALSQI+R +GKG++M+LG        +E VSSGSLGLDIALG+GG PKGRIVE
Sbjct: 1   KSKALSAALSQIERQFGKGSVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSGAVD++V+DSVAAL PRAE+EG+MGE+LPG+QARLMSQALRKLT+SI+
Sbjct: 120 QALEICDTLVRSGAVDVLVVDSVAALVPRAELEGEMGEALPGLQARLMSQALRKLTASIN 179


>gi|99866637|gb|ABF67656.1| RecA [Pectobacterium carotovorum]
          Length = 204

 Score =  205 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 144/204 (70%), Positives = 174/204 (85%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD
Sbjct: 1   STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G
Sbjct: 61  PIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIGVMFG+PETTTGGNALK Y S
Sbjct: 121 DSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKXYXS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRV 252
           VRLDIRR G+IK+ + + G++TRV
Sbjct: 181 VRLDIRRTGAIKEGEEVVGSETRV 204


>gi|25808117|gb|AAN74123.1| RecA [Helicobacter pylori]
          Length = 212

 Score =  205 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 138/212 (65%), Positives = 176/212 (83%), Gaps = 1/212 (0%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+
Sbjct: 1   VEKIDSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFI 60

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           DAEHALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+A
Sbjct: 61  DAEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKA 120

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGG 220
           EI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGG
Sbjct: 121 EIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGG 180

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           NALKFY+SVR+DIRR+ ++K  +   GN+ + 
Sbjct: 181 NALKFYASVRIDIRRIAALKQNEQHIGNRAKA 212


>gi|25808189|gb|AAN74159.1| RecA [Helicobacter pylori]
          Length = 209

 Score =  205 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 139/209 (66%), Positives = 176/209 (84%), Gaps = 1/209 (0%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAE
Sbjct: 1   IDSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+
Sbjct: 61  HALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNAL 223
           GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNAL
Sbjct: 121 GDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           KFY+SVR+DIRR+ ++K  +   GN+ + 
Sbjct: 181 KFYASVRIDIRRIAALKQNEQHIGNRAKA 209


>gi|29652216|gb|AAO87769.1| RecA [Listeria monocytogenes]
          Length = 193

 Score =  205 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 130/195 (66%), Positives = 162/195 (83%), Gaps = 2/195 (1%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           + +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+A
Sbjct: 1   KQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVA 58

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRSG
Sbjct: 59  LHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSG 118

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           AVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+R
Sbjct: 119 AVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIR 178

Query: 205 MKIGVMFGSPETTTG 219
            K+GVMFG+PE T G
Sbjct: 179 EKVGVMFGNPEITPG 193


>gi|25808127|gb|AAN74128.1| RecA [Helicobacter pylori]
          Length = 210

 Score =  205 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 135/210 (64%), Positives = 172/210 (81%), Gaps = 1/210 (0%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DA
Sbjct: 1   KIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI
Sbjct: 61  EHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-GVMFGSPETTTGGNA 222
           +GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKI    +GSPETTTGGNA
Sbjct: 121 DGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMTGYGSPETTTGGNA 180

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           LKFY+SVR+DIRR+ ++K  +   GN+ + 
Sbjct: 181 LKFYASVRIDIRRIAALKQNEQHIGNRAKA 210


>gi|325650776|emb|CBY89571.1| RecA protein [Rhizobium leguminosarum]
          Length = 173

 Score =  205 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 141/174 (81%), Positives = 162/174 (93%), Gaps = 1/174 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 173


>gi|297523475|emb|CBH31145.1| recombination protein A [Mesorhizobium sp. LSE1]
          Length = 178

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 136/178 (76%), Positives = 162/178 (91%), Gaps = 1/178 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTT
Sbjct: 1   IERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVR
Sbjct: 60  LALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           SGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS  +++FI
Sbjct: 120 SGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFI 177


>gi|25808135|gb|AAN74132.1| RecA [Helicobacter pylori]
          Length = 209

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 135/209 (64%), Positives = 172/209 (82%), Gaps = 1/209 (0%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAE
Sbjct: 1   IDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+
Sbjct: 61  HALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-GVMFGSPETTTGGNAL 223
           GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKI    +GSPETTTGGNAL
Sbjct: 121 GDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMTGYGSPETTTGGNAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           KFY+SVR+DIRR+ ++K  +   GN+ + 
Sbjct: 181 KFYASVRIDIRRIAALKQNEQHIGNRAKA 209


>gi|68637343|emb|CAF21800.1| recombinase A [Lactobacillus sharpeae]
          Length = 200

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 131/199 (65%), Positives = 168/199 (84%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++ VS+GSL LD ALG+GGFP+GRI+E+YGPESSGKTTLALH +A+ QK GGT A++DAE
Sbjct: 2   VQTVSTGSLALDEALGVGGFPRGRIIEVYGPESSGKTTLALHAVAEVQKAGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGVD+ +LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEI+
Sbjct: 62  NAMDPKYATNLGVDIDSLLLSQPDTGEQGLEIADTLVASGAVDIVVVDSVAALVPRAEID 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G++G++  G+QARLMSQALRKL+  I+R+K I +FINQ+R K+G+MFG+PETT GG ALK
Sbjct: 122 GEIGDAHVGLQARLMSQALRKLSGQINRTKTIAIFINQIREKVGIMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKDKD 243
           FY+++RL++RR   IKD  
Sbjct: 182 FYATIRLEVRRAEPIKDGT 200


>gi|25808113|gb|AAN74121.1| RecA [Helicobacter pylori]
          Length = 209

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 140/209 (66%), Positives = 176/209 (84%), Gaps = 1/209 (0%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAE
Sbjct: 1   IDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+
Sbjct: 61  HALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNAL 223
           GDMG+   G+QARLMS ALRK+T  + +    LVFINQ+RMKIG+M +GSPETTTGGNAL
Sbjct: 121 GDMGDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMMGYGSPETTTGGNAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           KFY+SVR+DIRR+ ++K  +   GN+ + 
Sbjct: 181 KFYASVRIDIRRIAALKQNEQHIGNRAKA 209


>gi|33087885|gb|AAP93073.1| recombination protein A [Yersinia ruckeri]
          Length = 187

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 125/189 (66%), Positives = 154/189 (81%), Gaps = 2/189 (1%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
            AAL QI++ +GKGAIM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPE
Sbjct: 1   AAALGQIEKQFGKGAIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPE 58

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI
Sbjct: 59  SSGKTTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEI 118

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +
Sbjct: 119 CDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTL 178

Query: 197 LVFINQMRM 205
           L+FINQ+RM
Sbjct: 179 LIFINQIRM 187


>gi|297528247|gb|ADI46159.1| recombination protein A [Rhizobium sp. CCBAU 03068]
          Length = 180

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 148/180 (82%), Positives = 164/180 (91%), Gaps = 1/180 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LGS  +I E IE VS+GSL LDIALGIGG P
Sbjct: 2   EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLP 60

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 61  KGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 120

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 121 QPDTGEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 180


>gi|25808187|gb|AAN74158.1| RecA [Helicobacter pylori]
          Length = 212

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 137/210 (65%), Positives = 175/210 (83%), Gaps = 1/210 (0%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DA
Sbjct: 3   KIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI
Sbjct: 63  EHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNA 222
           +GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNA
Sbjct: 123 DGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNA 182

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           LKFY+SVR+DIRR+ ++K  +   GN+ + 
Sbjct: 183 LKFYASVRIDIRRIAALKQNEQHIGNRAKA 212


>gi|9909927|emb|CAC04393.1| RecA protein [Rhizobium tropici]
          Length = 177

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 145/178 (81%), Positives = 165/178 (92%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI+EIYGP
Sbjct: 1   LEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 ITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 177


>gi|68635377|emb|CAF21750.1| recombinase A [Lactobacillus brevis]
          Length = 200

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 132/200 (66%), Positives = 169/200 (84%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E V SGSL LD+ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   EVETVPSGSLALDVALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+ALD  YA  LGV++ +LL+SQPDTGEQ L+I D L+ SGA+DI+V+DSVAAL PRAEI
Sbjct: 61  ENALDPAYATALGVNIDDLLLSQPDTGEQGLQIADALISSGAIDIVVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG AL
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFY++VRL++RR   IKD  
Sbjct: 181 KFYATVRLEVRRAEQIKDGT 200


>gi|262272839|gb|ACY40639.1| RecA [Leptotrichia trevisanii]
          Length = 239

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 157/239 (65%), Positives = 196/239 (82%), Gaps = 3/239 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+GSL LDIALGIGG P+GRIVEIYG ESSGKTTLALH IA++QK GGT AF+DAEHA
Sbjct: 1   AISTGSLNLDIALGIGGVPRGRIVEIYGAESSGKTTLALHIIAEAQKAGGTVAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YA+ LGV++  LLISQPDTGEQALEI+DMLVRSGA+D+IV+DSVAAL  +AEIEG+
Sbjct: 61  LDPVYAKALGVNIDELLISQPDTGEQALEISDMLVRSGAMDVIVVDSVAALVAKAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM---FGSPETTTGGNAL 223
           MG+   G+QARLMS+ALRKLT SIS+S  +++FINQ+R KIG      G   TT+GG AL
Sbjct: 121 MGDQQMGLQARLMSKALRKLTGSISKSDTVMIFINQIREKIGGFSFVPGVQTTTSGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           KF+S+VR++++RVGS+K  D + GN+  VKV KNK+A PFK+ +F +MYG GIS  GE+
Sbjct: 181 KFFSTVRMEVKRVGSVKQGDDVVGNEVVVKVTKNKVAPPFKEAKFSVMYGTGISRIGEV 239


>gi|68637435|emb|CAF21819.1| recombinase A [Pediococcus damnosus]
          Length = 200

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 133/200 (66%), Positives = 168/200 (84%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  +S+GSL LD ALG+GG+P+GRIVE+YGPESSGKTT+ALH +AQ QK GGT A++DA
Sbjct: 1   PISTISTGSLPLDDALGVGGYPRGRIVEVYGPESSGKTTVALHAVAQVQKEGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+ALD +YA  LGV++ +LL+SQPDTGE+ LEITD LV SGAVD++V+DSVAAL PRAEI
Sbjct: 61  ENALDPVYAEHLGVNIDDLLLSQPDTGEEGLEITDALVSSGAVDLVVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PE T GG AL
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPEVTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFY+++RL IRR   IKD  
Sbjct: 181 KFYATIRLKIRRAEQIKDGT 200


>gi|68635346|emb|CAF21744.1| recombinase A [Lactobacillus alimentarius]
          Length = 200

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 133/200 (66%), Positives = 168/200 (84%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  VS+GSL LD ALG+GGFP+GRIVEIYGPESSGKTT+ALH +AQ QK GGT A++DA
Sbjct: 1   QISTVSTGSLALDNALGVGGFPRGRIVEIYGPESSGKTTVALHAVAQVQKQGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+A+D  YA+ LGV++ +LL+S PDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEI
Sbjct: 61  ENAMDPEYAKALGVNIDDLLLSHPDTGEQGLEIADALVTSGAVDIVVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+G+MFG+PETT GG AL
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGIMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFY+++RL++RR   IKD  
Sbjct: 181 KFYATIRLEVRRAEQIKDGS 200


>gi|9909863|emb|CAC04386.1| RecA protein [Rhizobium etli]
          Length = 177

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 148/178 (83%), Positives = 166/178 (93%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSLGLDIALGIGG PKGRI+EIYGP
Sbjct: 1   LEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S
Sbjct: 120 ITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 177


>gi|195928224|gb|ACG55768.1| recombination protein A [Bradyrhizobium sp. STM 3964]
          Length = 181

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 133/181 (73%), Positives = 160/181 (88%), Gaps = 1/181 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG        IE VS+GSLGLDIALG+GG PKGRIVEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMRLGKNDRSM-DIETVSTGSLGLDIALGVGGLPKGRIVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 180

Query: 198 V 198
           +
Sbjct: 181 I 181


>gi|329770646|emb|CBX32266.1| recombinase A [Bradyrhizobium sp. BR 6009]
 gi|329770650|emb|CBX32268.1| recombinase A [Bradyrhizobium sp. BR 3790]
 gi|329770652|emb|CBX32269.1| recombinase A [Bradyrhizobium sp. BR 3793]
 gi|329770670|emb|CBX32278.1| recombinase A [Bradyrhizobium sp. BR 10105]
 gi|329770672|emb|CBX32279.1| recombinase A [Bradyrhizobium sp. BR 3751]
 gi|329770674|emb|CBX32280.1| recombinase A [Bradyrhizobium sp. BR 3753]
 gi|329770676|emb|CBX32281.1| recombinase A [Bradyrhizobium sp. BR 3755]
 gi|329770678|emb|CBX32282.1| recombinase A [Bradyrhizobium sp. BR 3759]
 gi|329770680|emb|CBX32283.1| recombinase A [Bradyrhizobium sp. BR 3760]
 gi|329770682|emb|CBX32284.1| recombinase A [Bradyrhizobium sp. BR 3761]
 gi|329770684|emb|CBX32285.1| recombinase A [Bradyrhizobium sp. BR 3763]
 gi|329770686|emb|CBX32286.1| recombinase A [Bradyrhizobium sp. BR 3767]
 gi|329770688|emb|CBX32287.1| recombinase A [Bradyrhizobium sp. BR 3768]
 gi|329770690|emb|CBX32288.1| recombinase A [Bradyrhizobium sp. BR 3771]
 gi|329770692|emb|CBX32289.1| recombinase A [Bradyrhizobium sp. BR 3772]
 gi|329770694|emb|CBX32290.1| recombinase A [Bradyrhizobium sp. BR 3778]
 gi|329770696|emb|CBX32291.1| recombinase A [Bradyrhizobium sp. BR 3779]
 gi|329770698|emb|CBX32292.1| recombinase A [Bradyrhizobium sp. BR 3782]
 gi|329770700|emb|CBX32293.1| recombinase A [Bradyrhizobium sp. BR 3787]
 gi|329770702|emb|CBX32294.1| recombinase A [Bradyrhizobium sp. BR 3799]
 gi|329770704|emb|CBX32295.1| recombinase A [Bradyrhizobium sp. BR 3800]
 gi|329770714|emb|CBX32300.1| recombinase A [Bradyrhizobium sp. BR 3669]
 gi|329770716|emb|CBX32301.1| recombinase A [Bradyrhizobium sp. BR 3670]
 gi|329770718|emb|CBX32302.1| recombinase A [Bradyrhizobium sp. BR 3683]
 gi|329770720|emb|CBX32303.1| recombinase A [Bradyrhizobium sp. BR 3687]
 gi|329770722|emb|CBX32304.1| recombinase A [Bradyrhizobium sp. BR 3684]
 gi|329770724|emb|CBX32305.1| recombinase A [Bradyrhizobium sp. BR 3653]
 gi|329770726|emb|CBX32306.1| recombinase A [Bradyrhizobium sp. BR 3654]
 gi|329770728|emb|CBX32307.1| recombinase A [Bradyrhizobium sp. BR 3655]
 gi|329770730|emb|CBX32308.1| recombinase A [Bradyrhizobium sp. BR 3685]
 gi|329770732|emb|CBX32309.1| recombinase A [Bradyrhizobium sp. BR 3686]
 gi|329770734|emb|CBX32310.1| recombinase A [Bradyrhizobium sp. BR 3698]
 gi|329770740|emb|CBX32313.1| recombinase A [Bradyrhizobium sp. BR 3709]
 gi|329770742|emb|CBX32314.1| recombinase A [Bradyrhizobium sp. BR 3710]
 gi|329770746|emb|CBX32316.1| recombinase A [Bradyrhizobium sp. BR 3648]
 gi|329770748|emb|CBX32317.1| recombinase A [Bradyrhizobium sp. BR 3644]
 gi|329770750|emb|CBX32318.1| recombinase A [Bradyrhizobium sp. BR 3645]
 gi|329770752|emb|CBX32319.1| recombinase A [Bradyrhizobium sp. BR 3642]
 gi|329770754|emb|CBX32320.1| recombinase A [Bradyrhizobium sp. BR 3643]
 gi|329770756|emb|CBX32321.1| recombinase A [Bradyrhizobium sp. BR 3740]
 gi|329770758|emb|CBX32322.1| recombinase A [Bradyrhizobium sp. BR 3640]
 gi|329770760|emb|CBX32323.1| recombinase A [Bradyrhizobium sp. BR 3641]
 gi|329770762|emb|CBX32324.1| recombinase A [Bradyrhizobium sp. BR 3646]
 gi|329770764|emb|CBX32325.1| recombinase A [Bradyrhizobium sp. BR 3649]
 gi|329770766|emb|CBX32326.1| recombinase A [Bradyrhizobium sp. BR 3658]
 gi|329770768|emb|CBX32327.1| recombinase A [Bradyrhizobium sp. BR 3659]
 gi|329770770|emb|CBX32328.1| recombinase A [Bradyrhizobium sp. BR 3664]
 gi|329770772|emb|CBX32329.1| recombinase A [Bradyrhizobium sp. BR 3682]
 gi|329770778|emb|CBX32332.1| recombinase A [Bradyrhizobium sp. BR 3672]
 gi|329770780|emb|CBX32333.1| recombinase A [Bradyrhizobium sp. BR 3656]
          Length = 180

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 134/181 (74%), Positives = 159/181 (87%), Gaps = 1/181 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           + +DKSKAL AALSQI+R +GKG++M+LG        +E VSSGSLGLDIALG+GG PKG
Sbjct: 1   SSMDKSKALSAALSQIERQFGKGSVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKG 59

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQP
Sbjct: 60  RIVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQP 119

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT
Sbjct: 120 DTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLT 179

Query: 188 S 188
           +
Sbjct: 180 A 180


>gi|118767309|gb|ABL11490.1| RecA [Rhizobium leguminosarum bv. viciae]
          Length = 180

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 141/179 (78%), Positives = 165/179 (92%), Gaps = 1/179 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K++  EAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+E
Sbjct: 2   KARRFEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 60

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 61  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 120

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SI
Sbjct: 121 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASI 179


>gi|162568952|gb|ABY19402.1| RecA [Sinorhizobium meliloti]
          Length = 180

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 148/181 (81%), Positives = 167/181 (92%), Gaps = 1/181 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIY
Sbjct: 1   KALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQA
Sbjct: 60  GPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S
Sbjct: 120 LEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 179

Query: 194 K 194
            
Sbjct: 180 N 180


>gi|262272841|gb|ACY40640.1| RecA [Leptotrichia buccalis]
          Length = 238

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 155/238 (65%), Positives = 196/238 (82%), Gaps = 3/238 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+GSL LDIALGIGG P+GRIVEIYG ESSGKTTLALH IA++QK GG  AF+DAEHA
Sbjct: 1   AISTGSLNLDIALGIGGVPRGRIVEIYGAESSGKTTLALHIIAEAQKAGGVVAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YA+ LGV++  LLISQPDTGEQALEI+DMLVRSGA+D+IV+DSVAAL P+AEIEG+
Sbjct: 61  LDPVYAKALGVNIDELLISQPDTGEQALEISDMLVRSGAIDVIVVDSVAALVPKAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM---FGSPETTTGGNAL 223
           MG+   G+QARLMS+ALRKLT +I++S  +++FINQ+R KIG      G   TT+GG AL
Sbjct: 121 MGDQQMGLQARLMSKALRKLTGNIAKSDTVMIFINQIREKIGGFSFVPGVQTTTSGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE 281
           KF+S+VR++++RVGS+K  D + G++  VKV KNK+A PFK+ +F+IMYG GIS  GE
Sbjct: 181 KFFSTVRMEVKRVGSVKQGDDVVGSEVVVKVTKNKVAPPFKEAKFNIMYGTGISKIGE 238


>gi|68637159|emb|CAF21760.1| recombinase A [Lactobacillus diolivorans]
          Length = 200

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 135/200 (67%), Positives = 169/200 (84%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  + +GSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   EISTIPTGSLALDEALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+ALD +YA  LGV++ +LL+SQPDTGEQ L+ITD LV SGAVDI+VIDSVAAL PRAEI
Sbjct: 61  ENALDPVYATHLGVNIDDLLLSQPDTGEQGLQITDALVTSGAVDIVVIDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG AL
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFY+++RL+IRR   IKD  
Sbjct: 181 KFYATIRLEIRRAEQIKDGT 200


>gi|297528271|gb|ADI46171.1| recombination protein A [Agrobacterium sp. CCBAU 81325]
          Length = 174

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 139/173 (80%), Positives = 159/173 (91%), Gaps = 1/173 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQ 
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQR 174


>gi|33087831|gb|AAP93046.1| recombination protein A [Yersinia intermedia]
          Length = 186

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 124/188 (65%), Positives = 154/188 (81%), Gaps = 2/188 (1%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           L QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSG
Sbjct: 1   LGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 58

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D 
Sbjct: 59  KTTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDA 118

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+F
Sbjct: 119 LTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIF 178

Query: 200 INQMRMKI 207
           INQ+RMKI
Sbjct: 179 INQIRMKI 186


>gi|297528251|gb|ADI46161.1| recombination protein A [Rhizobium sp. CCBAU 03288]
          Length = 173

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 138/171 (80%), Positives = 159/171 (92%), Gaps = 1/171 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI
Sbjct: 4   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 63  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMS
Sbjct: 123 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMS 173


>gi|9909929|emb|CAC04394.1| RecA protein [Rhizobium tropici]
          Length = 177

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 144/178 (80%), Positives = 165/178 (92%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI+EIYGP
Sbjct: 1   LEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 ITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 177


>gi|68637363|emb|CAF21805.1| recombinase A [Lactobacillus versmoldensis]
          Length = 200

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 136/200 (68%), Positives = 167/200 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  VS+GSL LD ALG+GGFP+GRIVEIYGPESSGKTT+ALH +A  QK GGT A++DA
Sbjct: 1   QISTVSTGSLALDNALGVGGFPRGRIVEIYGPESSGKTTVALHAVAAVQKEGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+A+D  YA  LGV++ +LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEI
Sbjct: 61  ENAMDPAYATALGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+G+MFG+PETT GG AL
Sbjct: 121 EGEMGDSHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS++RL++RR   IKD  
Sbjct: 181 KFYSTIRLEVRRSEQIKDGS 200


>gi|308522640|dbj|BAJ22931.1| DNA recombination protein [Aliivibrio sifiae]
 gi|308522642|dbj|BAJ22932.1| DNA recombination protein [Aliivibrio sifiae]
 gi|308522646|dbj|BAJ22934.1| DNA recombination protein [Aliivibrio sp. ATCC 33715]
          Length = 212

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 153/212 (72%), Positives = 184/212 (86%)

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL L  IAQ+QK G TCAF+DAEHALD IYA+KLGVD+  LL SQPDTGEQ
Sbjct: 1   YGPESSGKTTLTLEAIAQAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLCSQPDTGEQ 60

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +
Sbjct: 61  ALEIVDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQ 120

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+
Sbjct: 121 SNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGNETRI 180

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           KVVKNK+A+PFKQ E  I+YG+G +  GELID
Sbjct: 181 KVVKNKIAAPFKQAETQILYGKGFNREGELID 212


>gi|68637449|emb|CAF21822.1| recombinase A [Pediococcus inopinatus]
          Length = 200

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 132/200 (66%), Positives = 169/200 (84%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  +S+GSL LD ALG+GG+P+GRIVE+YGPESSGKTT+ALH +AQ QK GGT A++DA
Sbjct: 1   QISTISTGSLALDDALGVGGYPRGRIVEVYGPESSGKTTVALHAVAQVQKEGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+ALD +YA  LGV++ +LL+SQPDTGE+ LEITD LV SGAVD++V+DSVAAL PRAEI
Sbjct: 61  ENALDPVYAEHLGVNIDDLLLSQPDTGEEGLEITDALVSSGAVDLVVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PE T GG AL
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPEITPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFY+++RL++RR   IKD  
Sbjct: 181 KFYATIRLEVRRAEQIKDGT 200


>gi|9909578|emb|CAC04275.1| RecA protein [Agrobacterium rhizogenes]
          Length = 177

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 145/178 (81%), Positives = 165/178 (92%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRIVEIYGP
Sbjct: 1   LEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 ITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 177


>gi|29651975|gb|AAO87650.1| RecA [Listeria monocytogenes]
 gi|29651983|gb|AAO87654.1| RecA [Listeria monocytogenes]
 gi|29651989|gb|AAO87657.1| RecA [Listeria monocytogenes]
 gi|29652021|gb|AAO87673.1| RecA [Listeria monocytogenes]
 gi|29652041|gb|AAO87683.1| RecA [Listeria monocytogenes]
 gi|29652082|gb|AAO87703.1| RecA [Listeria monocytogenes]
 gi|29652098|gb|AAO87711.1| RecA [Listeria monocytogenes]
 gi|29652108|gb|AAO87715.1| RecA [Listeria monocytogenes]
 gi|29652130|gb|AAO87726.1| RecA [Listeria monocytogenes]
 gi|29652144|gb|AAO87733.1| RecA [Listeria monocytogenes]
 gi|29652148|gb|AAO87735.1| RecA [Listeria monocytogenes]
 gi|29652156|gb|AAO87739.1| RecA [Listeria monocytogenes]
 gi|29652200|gb|AAO87761.1| RecA [Listeria monocytogenes]
 gi|29652222|gb|AAO87772.1| RecA [Listeria monocytogenes]
 gi|29652258|gb|AAO87790.1| RecA [Listeria monocytogenes]
 gi|29652286|gb|AAO87804.1| RecA [Listeria monocytogenes]
 gi|29652304|gb|AAO87813.1| RecA [Listeria monocytogenes]
          Length = 191

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 129/193 (66%), Positives = 162/193 (83%), Gaps = 2/193 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MRMKIGVMFGSPE 215
           +R K+GVMFG+PE
Sbjct: 179 IREKVGVMFGNPE 191


>gi|9909986|emb|CAC04413.1| RecA protein [Sinorhizobium saheli]
          Length = 177

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 145/178 (81%), Positives = 166/178 (93%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGP
Sbjct: 1   LEAALSQIERSFGKGSIMKLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALQTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S
Sbjct: 120 ITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 177


>gi|25808101|gb|AAN74115.1| RecA [Helicobacter pylori]
          Length = 209

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 137/209 (65%), Positives = 175/209 (83%), Gaps = 1/209 (0%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAE
Sbjct: 1   IDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+
Sbjct: 61  HALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEID 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNAL 223
           GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNAL
Sbjct: 121 GDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           KFY+SVR+DIRR+ ++K  +   GN+ + 
Sbjct: 181 KFYASVRIDIRRIAALKQNEQHIGNRAKA 209


>gi|33087835|gb|AAP93048.1| recombination protein A [Yersinia intermedia]
          Length = 187

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 125/189 (66%), Positives = 155/189 (82%), Gaps = 2/189 (1%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           L QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSG
Sbjct: 1   LGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 58

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D 
Sbjct: 59  KTTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDA 118

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+F
Sbjct: 119 LTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIF 178

Query: 200 INQMRMKIG 208
           INQ+RMKIG
Sbjct: 179 INQIRMKIG 187


>gi|29652248|gb|AAO87785.1| RecA [Listeria monocytogenes]
 gi|29652300|gb|AAO87811.1| RecA [Listeria monocytogenes]
          Length = 192

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 129/193 (66%), Positives = 162/193 (83%), Gaps = 2/193 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MRMKIGVMFGSPE 215
           +R K+GVMFG+PE
Sbjct: 179 IREKVGVMFGNPE 191


>gi|329770708|emb|CBX32297.1| recombinase A [Bradyrhizobium sp. BR 10116]
 gi|329770710|emb|CBX32298.1| recombinase A [Bradyrhizobium sp. BR 3757]
 gi|329770712|emb|CBX32299.1| recombinase A [Bradyrhizobium sp. BR 3769]
 gi|329770738|emb|CBX32312.1| recombinase A [Bradyrhizobium sp. BR 3688]
 gi|329770744|emb|CBX32315.1| recombinase A [Bradyrhizobium sp. BR 3652]
 gi|329770774|emb|CBX32330.1| recombinase A [Bradyrhizobium sp. BR 3647]
 gi|329770776|emb|CBX32331.1| recombinase A [Bradyrhizobium sp. BR 3657]
 gi|329770782|emb|CBX32334.1| recombinase A [Bradyrhizobium sp. BR 3679]
 gi|329770784|emb|CBX32335.1| recombinase A [Bradyrhizobium sp. BR 3680]
 gi|329770786|emb|CBX32336.1| recombinase A [Bradyrhizobium sp. BR 3726]
 gi|329770788|emb|CBX32337.1| recombinase A [Bradyrhizobium sp. BR 3676]
 gi|329770790|emb|CBX32338.1| recombinase A [Bradyrhizobium sp. BR 3677]
 gi|329770792|emb|CBX32339.1| recombinase A [Bradyrhizobium sp. BR 3678]
 gi|329770794|emb|CBX32340.1| recombinase A [Bradyrhizobium sp. BR 3681]
 gi|329770796|emb|CBX32341.1| recombinase A [Bradyrhizobium sp. BR 3691]
 gi|329770798|emb|CBX32342.1| recombinase A [Bradyrhizobium sp. BR 3713]
 gi|329770800|emb|CBX32343.1| recombinase A [Bradyrhizobium sp. BR 3714]
 gi|329770802|emb|CBX32344.1| recombinase A [Bradyrhizobium sp. BR 3706]
          Length = 180

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 133/181 (73%), Positives = 159/181 (87%), Gaps = 1/181 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           + +DKSKAL AALSQI+R +GKG++M+LG        +E VSSGSLGLDIALG+GG PKG
Sbjct: 1   SSMDKSKALSAALSQIERQFGKGSVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKG 59

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           R+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQP
Sbjct: 60  RVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQP 119

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT
Sbjct: 120 DTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLT 179

Query: 188 S 188
           +
Sbjct: 180 A 180


>gi|329770668|emb|CBX32277.1| recombinase A [Bradyrhizobium sp. BR 10109]
          Length = 180

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 139/181 (76%), Positives = 162/181 (89%), Gaps = 1/181 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           + +DKSKAL AALSQI+R +GKG++M+LG +      IE VSSGSLGLDIALGIGG PKG
Sbjct: 1   SSMDKSKALAAALSQIERQFGKGSVMKLG-KSDRSMDIEAVSSGSLGLDIALGIGGLPKG 59

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ +LLISQP
Sbjct: 60  RIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDDLLISQP 119

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT
Sbjct: 120 DTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLT 179

Query: 188 S 188
           +
Sbjct: 180 A 180


>gi|329770654|emb|CBX32270.1| recombinase A [Bradyrhizobium sp. BR 10115]
 gi|329770656|emb|CBX32271.1| recombinase A [Bradyrhizobium sp. BR 10114]
 gi|329770658|emb|CBX32272.1| recombinase A [Bradyrhizobium sp. BR 3791]
 gi|329770660|emb|CBX32273.1| recombinase A [Bradyrhizobium sp. BR 3792]
 gi|329770662|emb|CBX32274.1| recombinase A [Bradyrhizobium sp. BR 3794]
 gi|329770664|emb|CBX32275.1| recombinase A [Bradyrhizobium sp. BR 3796]
 gi|329770666|emb|CBX32276.1| recombinase A [Bradyrhizobium sp. BR 10113]
 gi|329770706|emb|CBX32296.1| recombinase A [Bradyrhizobium sp. BR 3750]
 gi|329770736|emb|CBX32311.1| recombinase A [Bradyrhizobium sp. BR 3671]
          Length = 180

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 135/181 (74%), Positives = 159/181 (87%), Gaps = 1/181 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           + +DKSKAL AALSQI+R +GKG++M+LG        +E VSSGSLGLDIALG+GG PKG
Sbjct: 1   SSMDKSKALSAALSQIERQFGKGSVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKG 59

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQP
Sbjct: 60  RIVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQP 119

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT
Sbjct: 120 DTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLT 179

Query: 188 S 188
           +
Sbjct: 180 A 180


>gi|291246117|gb|ADD85183.1| RecA [Borrelia recurrentis]
          Length = 218

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 134/219 (61%), Positives = 183/219 (83%), Gaps = 1/219 (0%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           A  QI++ +GKG+++++G    + + +E + SG + LD A+GIGG+P+GR+VEI+GPESS
Sbjct: 1   ARVQIEKDFGKGSLIKMGE-SPVGKYLESIPSGFILLDEAIGIGGYPRGRVVEIFGPESS 59

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTL L  IA+ QKTGG  AF+DAEHALD +YAR LGV++  L +SQPDTGEQAL+I +
Sbjct: 60  GKTTLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQPDTGEQALDIAE 119

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            L+RSG VD+IV+DSVAAL P+AEI+G+MG++  G+QARLMS+ALRK+T+ +S+S   ++
Sbjct: 120 YLIRSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGLQARLMSKALRKITAILSKSNACIM 179

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V 
Sbjct: 180 FINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKVE 218


>gi|118767323|gb|ABL11497.1| RecA [Rhizobium sp. PEPSM15]
          Length = 180

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 147/179 (82%), Positives = 165/179 (92%), Gaps = 1/179 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           EAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPE
Sbjct: 3   EAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPE 61

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLAL TIA+SQK GG CA VDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI
Sbjct: 62  SSGKTTLALQTIAESQKKGGICAXVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEI 121

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           TD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C
Sbjct: 122 TDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNC 180


>gi|297528265|gb|ADI46168.1| recombination protein A [Rhizobium sp. CCBAU 61054]
          Length = 173

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 143/172 (83%), Positives = 159/172 (92%), Gaps = 1/172 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  SI E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNESIVE-IETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQ
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQ 173


>gi|68637241|emb|CAF21776.1| recombinase A [Lactobacillus kimchii]
          Length = 200

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 135/200 (67%), Positives = 169/200 (84%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  VS+GSL LD ALG+GGFP+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   QISTVSTGSLALDNALGVGGFPRGRIVEIYGPESSGKTTVALHAVAEVQKQGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+A+D  YA+ LGV++ +LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEI
Sbjct: 61  ENAMDPEYAKALGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+G+MFG+PETT GG AL
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS++RL++RR   IKD  
Sbjct: 181 KFYSTIRLEVRRAEQIKDGS 200


>gi|90193549|gb|ABD92367.1| RecA [Rhizobium lusitanum]
          Length = 173

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 141/172 (81%), Positives = 159/172 (92%), Gaps = 1/172 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 2   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 61  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           GEQALEITD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQ
Sbjct: 121 GEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQ 172


>gi|68635405|emb|CAF21756.1| recombinase A [Lactobacillus collinoides]
          Length = 200

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 130/200 (65%), Positives = 167/200 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  +SSGSL LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   KISTISSGSLALDNALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKQGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+ALD  YA  LGV++ +LL+SQPDTGEQ LEI D LV SGAVD++V+DSVAAL PRAEI
Sbjct: 61  ENALDPAYATNLGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDLLVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           +G+MG++  G+QARLMSQALRKL+ +I+++  I +FINQ+R K+GVMFG+PETT GG AL
Sbjct: 121 DGEMGDAHVGLQARLMSQALRKLSGTINKTHTIAMFINQIREKVGVMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFY++VRL+IRR   IK+  
Sbjct: 181 KFYATVRLEIRRAEQIKEGT 200


>gi|297528255|gb|ADI46163.1| recombination protein A [Rhizobium sp. CCBAU 21106]
          Length = 174

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 139/172 (80%), Positives = 158/172 (91%), Gaps = 1/172 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQ
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQ 173


>gi|297528243|gb|ADI46157.1| recombination protein A [Rhizobium sp. CCBAU 01116]
          Length = 173

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 143/172 (83%), Positives = 159/172 (92%), Gaps = 1/172 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  +I E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQ
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQ 173


>gi|329770804|emb|CBX32345.1| recombinase A [Bradyrhizobium sp. BR 3715]
 gi|329770806|emb|CBX32346.1| recombinase A [Bradyrhizobium sp. BR 3716]
          Length = 180

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 135/181 (74%), Positives = 159/181 (87%), Gaps = 1/181 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           + +DKSKAL AALSQI+R +GKG++M+LG        IE +SSGSLGLDIALG+GG PKG
Sbjct: 1   SSMDKSKALSAALSQIERQFGKGSVMKLGKNDRSM-DIETISSGSLGLDIALGVGGLPKG 59

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQP
Sbjct: 60  RIVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQP 119

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT
Sbjct: 120 DTGEQALEIADTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLT 179

Query: 188 S 188
           +
Sbjct: 180 A 180


>gi|90193551|gb|ABD92368.1| RecA [Rhizobium pisi]
          Length = 181

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 141/178 (79%), Positives = 164/178 (92%), Gaps = 1/178 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           EAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPE
Sbjct: 5   EAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPE 63

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI
Sbjct: 64  SSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEI 123

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           TD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS + 
Sbjct: 124 TDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISNAN 181


>gi|195928282|gb|ACG55797.1| recombination protein A [Bradyrhizobium denitrificans]
          Length = 181

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 131/181 (72%), Positives = 160/181 (88%), Gaps = 1/181 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG        +E VS+GSLGLDIALGIGG PKGR++EIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSM-DVETVSTGSLGLDIALGIGGLPKGRVIEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSHTMV 180

Query: 198 V 198
           +
Sbjct: 181 I 181


>gi|30961731|gb|AAP39984.1| RecA [Helicobacter acinonychis]
          Length = 216

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 138/205 (67%), Positives = 174/205 (84%), Gaps = 1/205 (0%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEH
Sbjct: 1   DSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+G
Sbjct: 61  ALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALK 224
           DMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALK
Sbjct: 121 DMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALK 180

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQ 249
           FY+SVR+DIRR+ ++K  +   GN+
Sbjct: 181 FYASVRIDIRRIAALKQNEQHIGNR 205


>gi|29651985|gb|AAO87655.1| RecA [Listeria monocytogenes]
 gi|29652005|gb|AAO87665.1| RecA [Listeria monocytogenes]
 gi|29652058|gb|AAO87691.1| RecA [Listeria monocytogenes]
 gi|29652122|gb|AAO87722.1| RecA [Listeria monocytogenes]
 gi|29652242|gb|AAO87782.1| RecA [Listeria monocytogenes]
 gi|29652252|gb|AAO87787.1| RecA [Listeria monocytogenes]
          Length = 190

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 128/192 (66%), Positives = 161/192 (83%), Gaps = 2/192 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MRMKIGVMFGSP 214
           +R K+GVMFG+P
Sbjct: 179 IREKVGVMFGNP 190


>gi|195928202|gb|ACG55757.1| recombination protein A [Bradyrhizobium sp. STM 3843]
 gi|195928204|gb|ACG55758.1| recombination protein A [Bradyrhizobium sp. STM 3844]
 gi|195928206|gb|ACG55759.1| recombination protein A [Bradyrhizobium sp. STM 3846]
          Length = 181

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 131/181 (72%), Positives = 160/181 (88%), Gaps = 1/181 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG        IE +S+GSLGLD+ALG+GG PKGRIVEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSM-DIETISTGSLGLDVALGVGGLPKGRIVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 180

Query: 198 V 198
           +
Sbjct: 181 I 181


>gi|68637409|emb|CAF21814.1| recombinase A [Oenococcus oeni]
          Length = 200

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 132/200 (66%), Positives = 171/200 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            ++V+S+GSL LDIALG+GG+PKGRI+E++GPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   QVDVISTGSLKLDIALGVGGYPKGRIIEVFGPESSGKTTVALHAVAEVQKQGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E++LD+ YA+ LGV++ +LL+SQPDTGEQ LEI D LV SGA+D++VIDSVAAL PRAEI
Sbjct: 61  ENSLDAKYAQALGVNVDDLLLSQPDTGEQGLEIADDLVNSGAIDLLVIDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRKL  +++R+  I +FINQ+R KIG+MFG+PETT GG AL
Sbjct: 121 EGEMGDSHVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGIMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS+VRL++RR   IKD  
Sbjct: 181 KFYSTVRLEVRRSAQIKDGT 200


>gi|118767327|gb|ABL11499.1| RecA [Rhizobium pisi]
          Length = 179

 Score =  203 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 141/178 (79%), Positives = 164/178 (92%), Gaps = 1/178 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           EAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPE
Sbjct: 3   EAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPE 61

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI
Sbjct: 62  SSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEI 121

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           TD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS + 
Sbjct: 122 TDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISNAN 179


>gi|68637310|emb|CAF21792.1| recombinase A [Lactobacillus perolens]
          Length = 200

 Score =  203 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 134/200 (67%), Positives = 169/200 (84%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  + SGSL LD ALG+GG+P+GRIVE+YGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   QISTIPSGSLALDDALGVGGYPRGRIVEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+ALD +YA  LGV++ +LL+SQPDTGEQ LEITD LV SGA+DI+VIDSVAAL PRAEI
Sbjct: 61  ENALDPVYATHLGVNIDDLLLSQPDTGEQGLEITDALVTSGAIDIVVIDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG AL
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLSGTINKTKTIAIFINQIREKVGVMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFY+++RL+IRR   IKD  
Sbjct: 181 KFYATIRLEIRRAEQIKDGT 200


>gi|99866643|gb|ABF67659.1| RecA [Pectobacterium carotovorum]
          Length = 204

 Score =  203 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 143/204 (70%), Positives = 174/204 (85%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD
Sbjct: 1   STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G
Sbjct: 61  PIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+ 
Sbjct: 121 DSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYAX 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRV 252
           VRLDIRR G+I + + + G++TRV
Sbjct: 181 VRLDIRRTGAIXEGEXVVGSETRV 204


>gi|6694829|gb|AAF25414.1|AF214767_1 RecA protein [Arthrobacter sp. 'SMCC G979']
          Length = 209

 Score =  203 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 143/209 (68%), Positives = 174/209 (83%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD   LL
Sbjct: 1   LPRGRVVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDAEHALDPEYAAKLGVDTDALL 60

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIEGDMG+S  G+QARLMSQAL
Sbjct: 61  VSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQARLMSQAL 120

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ ++K+  
Sbjct: 121 RKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQTLKEGA 180

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMY 272
              GN+T+ K+VKNKMA PFK  EFDI+Y
Sbjct: 181 DSVGNRTKAKIVKNKMAPPFKVAEFDIIY 209


>gi|68637164|emb|CAF21762.1| recombinase A [Lactobacillus equi]
          Length = 200

 Score =  203 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 136/200 (68%), Positives = 167/200 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  VSSGSL LD ALG+GGFP+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   QISTVSSGSLALDEALGVGGFPRGRIVEIYGPESSGKTTVALHAVAEVQKAGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+ALD  YA  LGV++  LL+SQPDTGEQ LEI D LV SGA+DI+V+DSVAAL PRAEI
Sbjct: 61  ENALDPAYATALGVNIDELLLSQPDTGEQGLEIADALVSSGAIDIVVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+G+MFG+PETT GG AL
Sbjct: 121 EGEMGDSHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGIMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           K+YS++RLD+RR   IKD  
Sbjct: 181 KYYSTIRLDVRRSEQIKDGS 200


>gi|329770648|emb|CBX32267.1| recombinase A [Bradyrhizobium sp. BR 3609]
          Length = 180

 Score =  203 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 135/181 (74%), Positives = 159/181 (87%), Gaps = 1/181 (0%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           + +DKSKAL AALSQI+R +GKG++M+LG        +E VSSGSLGLDIALG+GG PKG
Sbjct: 1   SSMDKSKALSAALSQIERQFGKGSVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKG 59

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQP
Sbjct: 60  RIVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQP 119

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT
Sbjct: 120 DTGEQALEIADTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLT 179

Query: 188 S 188
           +
Sbjct: 180 A 180


>gi|297528269|gb|ADI46170.1| recombination protein A [Rhizobium sp. CCBAU 65248]
          Length = 173

 Score =  203 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 140/172 (81%), Positives = 158/172 (91%), Gaps = 1/172 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQ
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQ 173


>gi|25808085|gb|AAN74107.1| RecA [Helicobacter pylori]
          Length = 212

 Score =  203 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 139/212 (65%), Positives = 176/212 (83%), Gaps = 1/212 (0%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+
Sbjct: 1   VEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFI 60

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           DAEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+A
Sbjct: 61  DAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKA 120

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGG 220
           EI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGG
Sbjct: 121 EIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGG 180

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           NALKFY+S R+DIRR+ ++K  +   GN+ + 
Sbjct: 181 NALKFYASGRIDIRRIAALKQNEQHIGNRAKA 212


>gi|29652045|gb|AAO87685.1| RecA [Listeria monocytogenes]
          Length = 185

 Score =  203 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 123/187 (65%), Positives = 155/187 (82%), Gaps = 2/187 (1%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
            QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGK
Sbjct: 1   KQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGK 58

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + L
Sbjct: 59  TTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEAL 118

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FI
Sbjct: 119 VRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFI 178

Query: 201 NQMRMKI 207
           NQ+R K+
Sbjct: 179 NQIREKV 185


>gi|25808123|gb|AAN74126.1| RecA [Helicobacter pylori]
          Length = 208

 Score =  203 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 134/208 (64%), Positives = 171/208 (82%), Gaps = 1/208 (0%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEH
Sbjct: 1   DAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+G
Sbjct: 61  ALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-GVMFGSPETTTGGNALK 224
           DMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKI    +GSPETTTGGNALK
Sbjct: 121 DMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMTGYGSPETTTGGNALK 180

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           FY+SVR+DIRR+ ++K  +   GN+ + 
Sbjct: 181 FYASVRIDIRRIAALKQNEQHIGNRAKA 208


>gi|68637168|emb|CAF21763.1| recombinase A [Lactobacillus farciminis]
          Length = 200

 Score =  203 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 137/200 (68%), Positives = 168/200 (84%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  VSSGSL LD ALG+GGFP+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   QISTVSSGSLALDNALGVGGFPRGRIVEIYGPESSGKTTVALHAVAEVQKQGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+A+D  YA  LGV++ +LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEI
Sbjct: 61  ENAMDPAYATALGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+G+MFG+PETT GG AL
Sbjct: 121 EGEMGDSHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS++RL++RR   IKD  
Sbjct: 181 KFYSTIRLEVRRAEQIKDGT 200


>gi|195928088|gb|ACG55700.1| recombination protein A [Bradyrhizobium sp. ORS280]
 gi|195928090|gb|ACG55701.1| recombination protein A [Bradyrhizobium sp. ORS285]
 gi|195928092|gb|ACG55702.1| recombination protein A [Bradyrhizobium sp. ORS292]
 gi|195928096|gb|ACG55704.1| recombination protein A [Bradyrhizobium sp. ORS295]
 gi|195928098|gb|ACG55705.1| recombination protein A [Bradyrhizobium sp. ORS297]
 gi|195928108|gb|ACG55710.1| recombination protein A [Bradyrhizobium sp. ORS311]
 gi|195928112|gb|ACG55712.1| recombination protein A [Bradyrhizobium sp. ORS324]
 gi|195928118|gb|ACG55715.1| recombination protein A [Bradyrhizobium sp. ORS340]
 gi|195928120|gb|ACG55716.1| recombination protein A [Bradyrhizobium sp. ORS341]
 gi|195928122|gb|ACG55717.1| recombination protein A [Bradyrhizobium sp. ORS342]
 gi|195928126|gb|ACG55719.1| recombination protein A [Bradyrhizobium sp. ORS346]
 gi|195928130|gb|ACG55721.1| recombination protein A [Bradyrhizobium sp. ORS356]
 gi|195928132|gb|ACG55722.1| recombination protein A [Bradyrhizobium sp. ORS359]
 gi|195928134|gb|ACG55723.1| recombination protein A [Bradyrhizobium sp. ORS361]
 gi|195928136|gb|ACG55724.1| recombination protein A [Bradyrhizobium sp. ORS380]
 gi|195928138|gb|ACG55725.1| recombination protein A [Bradyrhizobium sp. ORS383]
 gi|195928140|gb|ACG55726.1| recombination protein A [Bradyrhizobium sp. ORS384]
 gi|195928142|gb|ACG55727.1| recombination protein A [Bradyrhizobium sp. ORS386]
 gi|195928146|gb|ACG55729.1| recombination protein A [Bradyrhizobium sp. ORS394]
 gi|195928148|gb|ACG55730.1| recombination protein A [Bradyrhizobium sp. ORS396]
 gi|195928150|gb|ACG55731.1| recombination protein A [Bradyrhizobium sp. ORS397]
 gi|195928152|gb|ACG55732.1| recombination protein A [Bradyrhizobium sp. ORS402]
 gi|195928154|gb|ACG55733.1| recombination protein A [Bradyrhizobium sp. ORS408]
 gi|195928156|gb|ACG55734.1| recombination protein A [Bradyrhizobium sp. ORS2005]
 gi|195928158|gb|ACG55735.1| recombination protein A [Bradyrhizobium sp. ORS2006]
 gi|195928160|gb|ACG55736.1| recombination protein A [Bradyrhizobium sp. ORS2008]
 gi|195928162|gb|ACG55737.1| recombination protein A [Bradyrhizobium sp. ORS2009]
 gi|195928164|gb|ACG55738.1| recombination protein A [Bradyrhizobium sp. ORS2011]
 gi|195928166|gb|ACG55739.1| recombination protein A [Bradyrhizobium sp. ORS2014]
 gi|195928178|gb|ACG55745.1| recombination protein A [Bradyrhizobium sp. STM 3796]
 gi|195928182|gb|ACG55747.1| recombination protein A [Bradyrhizobium sp. STM 3810]
 gi|195928190|gb|ACG55751.1| recombination protein A [Bradyrhizobium sp. STM 3832]
 gi|195928192|gb|ACG55752.1| recombination protein A [Bradyrhizobium sp. STM 3833]
 gi|195928208|gb|ACG55760.1| recombination protein A [Bradyrhizobium sp. STM 3847]
 gi|195928214|gb|ACG55763.1| recombination protein A [Bradyrhizobium sp. STM 3953]
 gi|195928228|gb|ACG55770.1| recombination protein A [Bradyrhizobium sp. STM 3967]
 gi|195928230|gb|ACG55771.1| recombination protein A [Bradyrhizobium sp. STM 4497]
 gi|195928232|gb|ACG55772.1| recombination protein A [Bradyrhizobium sp. STM 4498]
 gi|195928234|gb|ACG55773.1| recombination protein A [Bradyrhizobium sp. STM 4499]
 gi|195928236|gb|ACG55774.1| recombination protein A [Bradyrhizobium sp. STM 4500]
 gi|195928238|gb|ACG55775.1| recombination protein A [Bradyrhizobium sp. STM 4501]
 gi|195928240|gb|ACG55776.1| recombination protein A [Bradyrhizobium sp. STM 4502]
 gi|195928242|gb|ACG55777.1| recombination protein A [Bradyrhizobium sp. STM 4503]
 gi|195928244|gb|ACG55778.1| recombination protein A [Bradyrhizobium sp. STM 4504]
 gi|195928246|gb|ACG55779.1| recombination protein A [Bradyrhizobium sp. STM 4505]
 gi|195928248|gb|ACG55780.1| recombination protein A [Bradyrhizobium sp. STM 4506]
 gi|195928250|gb|ACG55781.1| recombination protein A [Bradyrhizobium sp. STM 4508]
 gi|195928252|gb|ACG55782.1| recombination protein A [Bradyrhizobium sp. STM 4509]
 gi|195928254|gb|ACG55783.1| recombination protein A [Bradyrhizobium sp. STM 4510]
 gi|195928256|gb|ACG55784.1| recombination protein A [Bradyrhizobium sp. STM 4511]
 gi|195928258|gb|ACG55785.1| recombination protein A [Bradyrhizobium sp. STM 4512]
 gi|195928260|gb|ACG55786.1| recombination protein A [Bradyrhizobium sp. STM 4513]
 gi|195928262|gb|ACG55787.1| recombination protein A [Bradyrhizobium sp. STM 4514]
 gi|195928264|gb|ACG55788.1| recombination protein A [Bradyrhizobium sp. STM 4515]
 gi|195928266|gb|ACG55789.1| recombination protein A [Bradyrhizobium sp. STM 4516]
 gi|195928268|gb|ACG55790.1| recombination protein A [Bradyrhizobium sp. STM 4521]
 gi|195928274|gb|ACG55793.1| recombination protein A [Bradyrhizobium sp. STM 4524]
 gi|195928276|gb|ACG55794.1| recombination protein A [Bradyrhizobium sp. STM 4525]
 gi|195928278|gb|ACG55795.1| recombination protein A [Bradyrhizobium sp. STM 4543]
 gi|195928280|gb|ACG55796.1| recombination protein A [Bradyrhizobium sp. STM 4544]
 gi|195928284|gb|ACG55798.1| recombination protein A [Bradyrhizobium sp. ORS320]
          Length = 181

 Score =  203 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 133/181 (73%), Positives = 160/181 (88%), Gaps = 1/181 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG        +E VS+GSLGLDIALGIGG PKGRIVEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSM-DVETVSTGSLGLDIALGIGGLPKGRIVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 180

Query: 198 V 198
           +
Sbjct: 181 I 181


>gi|68637320|emb|CAF21795.1| recombinase A [Lactobacillus psittaci]
          Length = 200

 Score =  203 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 127/200 (63%), Positives = 167/200 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  V +GSL LD ALG+GG+P+GRIVE+YGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   QISTVPTGSLALDAALGVGGYPRGRIVEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+A+D  YA+ LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI
Sbjct: 61  ENAMDPAYAQALGVDIDSLILSQPNTGEEGLQIADTLITSGAIDILVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG AL
Sbjct: 121 EGEMGDSHVGLQARLMSQALRKLSGNINKTKTIAIFINQIREKVGVMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS++RL++RR   IK   
Sbjct: 181 KFYSTIRLEVRRAEQIKQSS 200


>gi|297528245|gb|ADI46158.1| recombination protein A [Rhizobium sp. CCBAU 65810]
          Length = 172

 Score =  203 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 143/171 (83%), Positives = 158/171 (92%), Gaps = 1/171 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  SI E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNDSIVE-IETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEGDMG+SLPG+QARLMS
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGDMGDSLPGLQARLMS 172


>gi|225008784|gb|ACN78940.1| RecA [Rhizobium sp. RTP05]
          Length = 175

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 141/175 (80%), Positives = 162/175 (92%), Gaps = 1/175 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LEAAL QI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRIVEIYGP
Sbjct: 1   LEAALXQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           ITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SI
Sbjct: 120 ITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASI 174


>gi|9909933|emb|CAC04388.1| RecA protein [Rhizobium galegae]
          Length = 177

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 147/178 (82%), Positives = 164/178 (92%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LEAALSQI+R +GKG+IM+LGS  +I E IE VS+GSL LDIALGIGG PKGRI EIYGP
Sbjct: 1   LEAALSQIERSFGKGSIMKLGSNDNIVE-IETVSTGSLSLDIALGIGGLPKGRIFEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 ITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 177


>gi|325651137|emb|CBY89390.1| RecA protein [Sinorhizobium meliloti]
          Length = 183

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 148/184 (80%), Positives = 167/184 (90%), Gaps = 1/184 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEA   QI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAXXXQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS
Sbjct: 120 QALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179

Query: 192 RSKC 195
           +S C
Sbjct: 180 KSNC 183


>gi|68635366|emb|CAF21749.1| recombinase A [Lactobacillus aviarius subsp. araffinosus]
          Length = 200

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 133/200 (66%), Positives = 167/200 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  V +GSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   QISTVPTGSLALDEALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQKNGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+ALD  YA  LGV++ +LL+SQPDTGE+ LEI D LV SGA+DI+V+DSVAAL PRAEI
Sbjct: 61  ENALDPAYASALGVNIDDLLLSQPDTGEEGLEIADALVSSGAIDIVVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG AL
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS++RLD+RR   IKD  
Sbjct: 181 KFYSTIRLDVRRAEQIKDGS 200


>gi|268308929|gb|ACY95425.1| recombination protein A [Rhizobium sp. CCBAU 45252]
          Length = 175

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 143/172 (83%), Positives = 159/172 (92%), Gaps = 1/172 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  +I E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 4   VDKSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 63  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           GEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQ
Sbjct: 123 GEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQ 174


>gi|68637217|emb|CAF21772.1| recombinase A [Lactobacillus hilgardii]
          Length = 200

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 132/200 (66%), Positives = 169/200 (84%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  + +GSL LD ALG+GG+P+GRIVE+YGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   QISTIPTGSLALDEALGVGGYPRGRIVEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+ALD +YA  LGV++ +LL+SQPDTGEQ L+ITD LV SGA+DI+VIDSVAAL PRAEI
Sbjct: 61  ENALDPVYATHLGVNIDDLLLSQPDTGEQGLQITDTLVTSGAIDIVVIDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG AL
Sbjct: 121 EGEMGDTHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFY+++RL+IRR   IK+  
Sbjct: 181 KFYATIRLEIRRAEQIKNGT 200


>gi|68635382|emb|CAF21751.1| recombinase A [Lactobacillus buchneri]
 gi|68637289|emb|CAF21786.1| recombinase A [Lactobacillus parabuchneri]
          Length = 200

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 135/200 (67%), Positives = 169/200 (84%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  + SGSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   QISTIPSGSLALDDALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+ALD +YA  LGV++ +LL+SQPDTGEQ L+ITD LV SGA+DI+VIDSVAAL PRAEI
Sbjct: 61  ENALDPVYATHLGVNIDDLLLSQPDTGEQGLQITDALVTSGAIDIVVIDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG AL
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFY+++RL+IRR   IKD  
Sbjct: 181 KFYATIRLEIRRAEQIKDGT 200


>gi|68637305|emb|CAF21790.1| recombinase A [Lactobacillus parakefiri]
          Length = 200

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 134/200 (67%), Positives = 169/200 (84%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  + SGSL LD ALG+GG+P+GRIVE+YGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   QISTIPSGSLALDDALGVGGYPRGRIVEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+ALD +YA  LGV++ +LL+SQPDTGEQ L+ITD LV SGA+DI+VIDSVAAL PRAEI
Sbjct: 61  ENALDPVYATHLGVNIDDLLLSQPDTGEQGLQITDALVTSGAIDIVVIDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG AL
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFY+++RL+IRR   IKD  
Sbjct: 181 KFYATIRLEIRRAEQIKDGT 200


>gi|29652066|gb|AAO87695.1| RecA [Listeria monocytogenes]
          Length = 184

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 123/186 (66%), Positives = 155/186 (83%), Gaps = 2/186 (1%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKT
Sbjct: 1   QIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKT 58

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LV
Sbjct: 59  TVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALV 118

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FIN
Sbjct: 119 RSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFIN 178

Query: 202 QMRMKI 207
           Q+R K+
Sbjct: 179 QIREKV 184


>gi|68635337|emb|CAF21742.1| recombinase A [Lactobacillus agilis]
          Length = 200

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 136/200 (68%), Positives = 167/200 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  VSSGSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   QISTVSSGSLALDEALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQKNGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+ALD  YA  LGVD+  LL+SQPDTGEQ LEI D LV SGA+DI+V+DSVAAL PRAEI
Sbjct: 61  ENALDPAYATALGVDIDQLLLSQPDTGEQGLEIADALVSSGAIDIVVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+G+MFG+PETT GG AL
Sbjct: 121 EGEMGDSHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGIMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS++RL++RR   IKD  
Sbjct: 181 KFYSTIRLEVRRAEQIKDGS 200


>gi|68637198|emb|CAF21768.1| recombinase A [Lactobacillus gasseri]
          Length = 200

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 128/200 (64%), Positives = 166/200 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  + SGSL LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   QISTIPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI
Sbjct: 61  ENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           +GDMG+S  G+QARLMSQALRKL+ +IS++K I VFINQ+R K+GVMFG+PETT GG AL
Sbjct: 121 DGDMGDSHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGVMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS++RL++RR   IK   
Sbjct: 181 KFYSTIRLEVRRAEQIKQGS 200


>gi|9909859|emb|CAC04375.1| RecA protein [Phyllobacterium myrsinacearum]
          Length = 177

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 143/178 (80%), Positives = 164/178 (92%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L+AALSQI+R +GKG+IM+L +   + E IE VS+GSL LDIALG+GG PKGRIVEIYGP
Sbjct: 1   LDAALSQIERAFGKGSIMRLETNEQVVE-IETVSTGSLSLDIALGVGGLPKGRIVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS
Sbjct: 120 ITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRS 177


>gi|163749987|ref|ZP_02157231.1| recombinase A [Shewanella benthica KT99]
 gi|161330261|gb|EDQ01242.1| recombinase A [Shewanella benthica KT99]
          Length = 205

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 120/188 (63%), Positives = 149/188 (79%), Gaps = 2/188 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            +K KAL A LSQI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRI
Sbjct: 5   ANKEKALNAVLSQIEKQFGKGSIMKLGENRSM--DVETISTGSLSLDIALGAGGLPLGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEH+LD IYA+ LGVD+ NLL SQPDT
Sbjct: 63  VEIYGPESSGKTTLTLEVIAAAQRQGRTCAFIDAEHSLDPIYAKNLGVDIDNLLCSQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  +
Sbjct: 123 GEQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182

Query: 190 ISRSKCIL 197
           + ++    
Sbjct: 183 LKQNNYHA 190


>gi|29652003|gb|AAO87664.1| RecA [Listeria monocytogenes]
          Length = 187

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 126/189 (66%), Positives = 158/189 (83%), Gaps = 2/189 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MRMKIGVMF 211
           +R K+GVMF
Sbjct: 179 IREKVGVMF 187


>gi|68637265|emb|CAF21781.1| recombinase A [Lactobacillus mindensis]
          Length = 200

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 135/200 (67%), Positives = 168/200 (84%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  VS+GSL LD ALG+GGFP+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   QISTVSTGSLALDNALGVGGFPRGRIVEIYGPESSGKTTVALHAVAEVQKEGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+A+D  YA  LGV++ +LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEI
Sbjct: 61  ENAMDPAYATALGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+G+MFG+PETT GG AL
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS++RL++RR   IKD  
Sbjct: 181 KFYSTIRLEVRRAEQIKDGS 200


>gi|262112798|emb|CBA73296.1| RecA protein [Burkholderia sp. JPY359]
 gi|262112806|emb|CBA73309.1| RecA protein [Burkholderia sp. JPY380]
 gi|262112820|emb|CBA73331.1| RecA protein [Burkholderia sp. JPY389]
 gi|262112882|emb|CBA73425.1| RecA protein [Burkholderia sp. JPY461]
          Length = 207

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 152/207 (73%), Positives = 184/207 (88%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA+KLGV++ +
Sbjct: 1   GGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAQKLGVNVSD 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQ
Sbjct: 61  LLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK 
Sbjct: 121 ALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKK 180

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEF 268
            D + GN+TRVKVVKNK++ PF++  F
Sbjct: 181 NDEVIGNETRVKVVKNKVSPPFREAIF 207


>gi|298205322|gb|ADI61872.1| recombinase protein A [Mesorhizobium sp. JS6]
          Length = 183

 Score =  202 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 144/184 (78%), Positives = 169/184 (91%), Gaps = 1/184 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG+     E IE VS+GSLGLDIALG+GG P+GRIVEIYGPESSGKTT+ALH
Sbjct: 1   FGKGSVMRLGANEKSVE-IETVSTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTMALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS  +++FINQ+RMK
Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMK 179

Query: 207 IGVM 210
           IGVM
Sbjct: 180 IGVM 183


>gi|29651997|gb|AAO87661.1| RecA [Listeria monocytogenes]
          Length = 185

 Score =  202 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 124/187 (66%), Positives = 156/187 (83%), Gaps = 2/187 (1%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKT
Sbjct: 1   QIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKT 58

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LV
Sbjct: 59  TVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALV 118

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FIN
Sbjct: 119 RSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFIN 178

Query: 202 QMRMKIG 208
           Q+R K+G
Sbjct: 179 QIREKVG 185


>gi|162568954|gb|ABY19403.1| RecA [Sinorhizobium meliloti]
          Length = 179

 Score =  202 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 147/180 (81%), Positives = 166/180 (92%), Gaps = 1/180 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           ALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYG
Sbjct: 1   ALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQAL
Sbjct: 60  PESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S 
Sbjct: 120 EITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSN 179


>gi|217037932|gb|ACJ76434.1| RecA [Bradyrhizobium sp. STM 3562]
          Length = 181

 Score =  202 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 135/181 (74%), Positives = 159/181 (87%), Gaps = 1/181 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           K L AALSQI+R +GKG++M+LG        +E VSSGSLGLDIALG+GG PKGRIVEIY
Sbjct: 2   KRLSAALSQIERQFGKGSVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRIVEIY 60

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQA
Sbjct: 61  GPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQA 120

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI D LVRSGAVD++V+DSVAAL PRAE+EG+MGE+LPG+QARLMSQALRKLT+SI++S
Sbjct: 121 LEICDTLVRSGAVDVLVVDSVAALVPRAELEGEMGEALPGLQARLMSQALRKLTASINKS 180

Query: 194 K 194
            
Sbjct: 181 N 181


>gi|29651979|gb|AAO87652.1| RecA [Listeria monocytogenes]
 gi|29651995|gb|AAO87660.1| RecA [Listeria monocytogenes]
 gi|29652126|gb|AAO87724.1| RecA [Listeria monocytogenes]
          Length = 189

 Score =  202 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 127/191 (66%), Positives = 160/191 (83%), Gaps = 2/191 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MRMKIGVMFGS 213
           +R K+GVMFG+
Sbjct: 179 IREKVGVMFGN 189


>gi|195928094|gb|ACG55703.1| recombination protein A [Bradyrhizobium sp. ORS293]
 gi|195928110|gb|ACG55711.1| recombination protein A [Bradyrhizobium sp. ORS321]
 gi|195928168|gb|ACG55740.1| recombination protein A [Bradyrhizobium sp. STM 3737]
 gi|195928170|gb|ACG55741.1| recombination protein A [Bradyrhizobium sp. STM 3739]
 gi|195928172|gb|ACG55742.1| recombination protein A [Bradyrhizobium sp. STM 3743]
 gi|195928174|gb|ACG55743.1| recombination protein A [Bradyrhizobium sp. STM 3792]
 gi|195928176|gb|ACG55744.1| recombination protein A [Bradyrhizobium sp. STM 3795]
 gi|195928180|gb|ACG55746.1| recombination protein A [Bradyrhizobium sp. STM 3809]
 gi|195928184|gb|ACG55748.1| recombination protein A [Bradyrhizobium sp. STM 3816]
 gi|195928186|gb|ACG55749.1| recombination protein A [Bradyrhizobium sp. STM 3825]
 gi|195928188|gb|ACG55750.1| recombination protein A [Bradyrhizobium sp. STM 3830]
 gi|195928194|gb|ACG55753.1| recombination protein A [Bradyrhizobium sp. STM 3835]
 gi|195928196|gb|ACG55754.1| recombination protein A [Bradyrhizobium sp. STM 3836]
 gi|195928198|gb|ACG55755.1| recombination protein A [Bradyrhizobium sp. STM 3839]
 gi|195928200|gb|ACG55756.1| recombination protein A [Bradyrhizobium sp. STM 3840]
 gi|195928210|gb|ACG55761.1| recombination protein A [Bradyrhizobium sp. STM 3849]
 gi|195928212|gb|ACG55762.1| recombination protein A [Bradyrhizobium sp. STM 3850]
 gi|195928216|gb|ACG55764.1| recombination protein A [Bradyrhizobium sp. STM 3954]
 gi|195928220|gb|ACG55766.1| recombination protein A [Bradyrhizobium sp. STM 3957]
 gi|195928222|gb|ACG55767.1| recombination protein A [Bradyrhizobium sp. STM 3959]
 gi|195928226|gb|ACG55769.1| recombination protein A [Bradyrhizobium sp. STM 3966]
 gi|195928272|gb|ACG55792.1| recombination protein A [Bradyrhizobium sp. STM 4523]
          Length = 181

 Score =  202 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 133/181 (73%), Positives = 160/181 (88%), Gaps = 1/181 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG        +E VS+GSLGLDIALGIGG PKGRIVEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSM-DVETVSTGSLGLDIALGIGGLPKGRIVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 121 DTLVRSGAVDVMVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 180

Query: 198 V 198
           +
Sbjct: 181 I 181


>gi|195928116|gb|ACG55714.1| recombination protein A [Bradyrhizobium sp. ORS339]
 gi|195928144|gb|ACG55728.1| recombination protein A [Bradyrhizobium sp. ORS389]
 gi|195928270|gb|ACG55791.1| recombination protein A [Bradyrhizobium sp. STM 4522]
          Length = 181

 Score =  202 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 134/181 (74%), Positives = 160/181 (88%), Gaps = 1/181 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG        +E VS+GSLGLDIALGIGG PKGRIVEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSM-DVETVSTGSLGLDIALGIGGLPKGRIVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A++QK GG CAF+DAEHALD IYARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEAQKKGGICAFIDAEHALDPIYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 121 DTLVRSGAVDVMVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 180

Query: 198 V 198
           +
Sbjct: 181 I 181


>gi|25808137|gb|AAN74133.1| RecA [Helicobacter pylori]
          Length = 208

 Score =  202 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 136/208 (65%), Positives = 174/208 (83%), Gaps = 1/208 (0%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEH
Sbjct: 1   DAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+G
Sbjct: 61  ALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALK 224
           DMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALK
Sbjct: 121 DMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALK 180

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           FY+SVR+DIRR+ ++K  +   GN+ + 
Sbjct: 181 FYASVRIDIRRIAALKQNEQHIGNRAKA 208


>gi|297528263|gb|ADI46167.1| recombination protein A [Rhizobium sp. CCBAU 45157]
          Length = 171

 Score =  202 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 142/171 (83%), Positives = 158/171 (92%), Gaps = 1/171 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  +I E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 2   VDKSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 61  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMS
Sbjct: 121 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMS 171


>gi|6694801|gb|AAF25386.1|AF214739_1 RecA protein [Arthrobacter sp. 'SMCC G969']
          Length = 209

 Score =  202 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 141/206 (68%), Positives = 173/206 (83%)

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
           +ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLG
Sbjct: 4   VALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHALDPEYAAKLG 63

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           VD   LL+SQPDTGEQALEI DML+ SG++D+IVIDSVAAL PRAEIEGDMG+S  G+QA
Sbjct: 64  VDTDALLVSQPDTGEQALEIMDMLIGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQA 123

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           RLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+
Sbjct: 124 RLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRI 183

Query: 237 GSIKDKDSITGNQTRVKVVKNKMASP 262
            ++K+     GN+T+ K+VKNKMA P
Sbjct: 184 QTLKEGADSVGNRTKAKIVKNKMAPP 209


>gi|297528261|gb|ADI46166.1| recombination protein A [Agrobacterium sp. CCBAU 31169]
          Length = 172

 Score =  202 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 138/171 (80%), Positives = 158/171 (92%), Gaps = 1/171 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMS
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMS 172


>gi|262112670|emb|CBA73098.1| RecA protein [Burkholderia sp. JPY157]
 gi|262112712|emb|CBA73164.1| RecA protein [Burkholderia sp. JPY264]
 gi|262112714|emb|CBA73167.1| RecA protein [Burkholderia sp. JPY266]
 gi|262112716|emb|CBA73170.1| RecA protein [Burkholderia sp. JPY268]
          Length = 207

 Score =  202 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 152/207 (73%), Positives = 183/207 (88%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA+KLGV++  
Sbjct: 1   GGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAQKLGVNVSE 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQ
Sbjct: 61  LLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK 
Sbjct: 121 ALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKK 180

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEF 268
            D + GN+TRVKVVKNK++ PF++  F
Sbjct: 181 NDEVIGNETRVKVVKNKVSPPFREAIF 207


>gi|290795161|gb|ADD64595.1| RecA recombinase [Vibrio sp. FAL559]
          Length = 195

 Score =  202 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 145/195 (74%), Positives = 171/195 (87%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +QK G TCAFVDAEH
Sbjct: 1   ETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIEG
Sbjct: 61  ALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKF
Sbjct: 121 EMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKF 180

Query: 226 YSSVRLDIRRVGSIK 240
           Y+SVRLDIRR G+IK
Sbjct: 181 YASVRLDIRRTGAIK 195


>gi|25808157|gb|AAN74143.1| RecA [Helicobacter pylori]
          Length = 207

 Score =  202 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 139/207 (67%), Positives = 174/207 (84%), Gaps = 1/207 (0%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHA
Sbjct: 1   SISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GD
Sbjct: 61  LDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGD 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKF 225
           MG+   G+QARLMS ALRK+T  + +    LVFINQ+RMKIG+M +GSPETTTGGNALKF
Sbjct: 121 MGDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMMGYGSPETTTGGNALKF 180

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRV 252
           Y+SVR+DIRR+ ++K  +   GN+ + 
Sbjct: 181 YASVRIDIRRIAALKQNEQHIGNRAKA 207


>gi|68637156|emb|CAF21759.1| recombinase A [Lactobacillus cypricasei]
          Length = 200

 Score =  202 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 133/200 (66%), Positives = 166/200 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  + SGSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ Q  GGT A++DA
Sbjct: 1   QISTIPSGSLALDEALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQAQGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+ALD +YA  LGV++  LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEI
Sbjct: 61  ENALDPVYASALGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG AL
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFY+++RL+IRR   IKD  
Sbjct: 181 KFYATIRLEIRRAEQIKDGS 200


>gi|330448874|gb|AEC23354.1| recombinase A [Vibrio sp. 15648_07]
          Length = 200

 Score =  202 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 141/196 (71%), Positives = 171/196 (87%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DA
Sbjct: 5   DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQRAGKTCAFIDA 64

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEI
Sbjct: 65  EHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEI 124

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 125 EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNAL 184

Query: 224 KFYSSVRLDIRRVGSI 239
           KFY+SVRLDIRR G++
Sbjct: 185 KFYASVRLDIRRTGAV 200


>gi|297528257|gb|ADI46164.1| recombination protein A [Rhizobium sp. CCBAU 25179]
          Length = 170

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 142/171 (83%), Positives = 158/171 (92%), Gaps = 1/171 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  +I E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 1   VDKSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRI 59

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 60  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 119

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMS
Sbjct: 120 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMS 170


>gi|110558989|gb|ABG75855.1| RecA [Agrobacterium rhizogenes]
          Length = 178

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 144/177 (81%), Positives = 164/177 (92%), Gaps = 1/177 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           EAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRIVEIYGPE
Sbjct: 3   EAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPE 61

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI
Sbjct: 62  SSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEI 121

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           TD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 122 TDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 178


>gi|99866663|gb|ABF67669.1| RecA [Pectobacterium carotovorum]
          Length = 204

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 142/204 (69%), Positives = 173/204 (84%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA + + G TCAF+DA HALD
Sbjct: 1   STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAXREGKTCAFIDAXHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYA+KLGVD+ NLL SQPDTGEQA EI D L RSGAVD+I++DSVAALTP+AEIEG++G
Sbjct: 61  PIYAKKLGVDIDNLLCSQPDTGEQAXEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+S
Sbjct: 121 DSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRV 252
           VRLDIRR G+IK+ + + G++TRV
Sbjct: 181 VRLDIRRTGAIKEGEEVVGSETRV 204


>gi|291172968|gb|ADD82751.1| recombinase A [Rhizobium sp. CCBAU 85040]
          Length = 181

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 147/180 (81%), Positives = 163/180 (90%), Gaps = 1/180 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LG + SI E IE VS+GSL LDIALGIGG P
Sbjct: 3   EDKSVDKSKALEAALSQIERSFGKGSIMKLGGKDSIVE-IETVSTGSLSLDIALGIGGLP 61

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 62  KGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 121

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQ LRK
Sbjct: 122 QPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQGLRK 181


>gi|296785025|dbj|BAJ08209.1| recombinase A [Fructobacillus sp. F214-1]
          Length = 210

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 137/210 (65%), Positives = 172/210 (81%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E   SGS+ LD+ALG+GG+PKGRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+
Sbjct: 1   ETSPSGSVKLDVALGVGGYPKGRIIEVYGPESSGKTTIALHAVAEIQKNGGTAAYIDAEN 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA  LGV    LL+SQPDTGEQ LEI D LV+SGAVD++V+DSVAAL PR EIEG
Sbjct: 61  ALDVKYAEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDMVVVDSVAALVPRVEIEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +MG++  G+QARLMSQALRKL  +++R+  I +FINQ+R K+GVMFG+PETT GG ALKF
Sbjct: 121 EMGDAHVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPETTPGGRALKF 180

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           YS++RL++RR   IKD   +TGN T+VKVV
Sbjct: 181 YSTIRLEVRRSTQIKDGSBVTGNLTKVKVV 210


>gi|297528253|gb|ADI46162.1| recombination protein A [Rhizobium sp. CCBAU 05003]
          Length = 180

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 142/181 (78%), Positives = 167/181 (92%), Gaps = 1/181 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LGS  ++ E IE +S+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL 
Sbjct: 1   FGKGSVMKLGSNENVVE-IETISTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAV
Sbjct: 60  TIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMK
Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMK 179

Query: 207 I 207
           I
Sbjct: 180 I 180


>gi|33087829|gb|AAP93045.1| recombination protein A [Yersinia intermedia]
          Length = 184

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 122/186 (65%), Positives = 152/186 (81%), Gaps = 2/186 (1%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           L QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSG
Sbjct: 1   LGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 58

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D 
Sbjct: 59  KTTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDA 118

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+F
Sbjct: 119 LTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIF 178

Query: 200 INQMRM 205
           INQ+RM
Sbjct: 179 INQIRM 184


>gi|254055245|gb|ACT64222.1| RecA [Burkholderia cepacia]
          Length = 187

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 136/188 (72%), Positives = 164/188 (87%), Gaps = 1/188 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMF 211
           RMKIGVMF
Sbjct: 180 RMKIGVMF 187


>gi|254055251|gb|ACT64225.1| RecA [Streptomyces cinnamonensis]
          Length = 186

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 127/188 (67%), Positives = 160/188 (85%), Gaps = 2/188 (1%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           +R +GKGA+M++G + +  E IEV+ +GS  LD+ALG+GG P+GR+VE+YGPESSGKTTL
Sbjct: 1   ERQFGKGAVMRMGERPN--EPIEVIPTGSTALDVALGVGGIPRGRVVEVYGPESSGKTTL 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            LH +A +Q+ GG  AFVDAEHALD  YA+KLGVD+ NL++SQPD GEQALEI DMLVRS
Sbjct: 59  TLHAVANAQRAGGAVAFVDAEHALDPEYAKKLGVDIDNLILSQPDNGEQALEIVDMLVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+TS++++SK   +FINQ+
Sbjct: 119 GALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITSALNQSKTTAIFINQL 178

Query: 204 RMKIGVMF 211
           R KIGVMF
Sbjct: 179 REKIGVMF 186


>gi|195928102|gb|ACG55707.1| recombination protein A [Bradyrhizobium sp. ORS303]
          Length = 181

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 133/181 (73%), Positives = 160/181 (88%), Gaps = 1/181 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG        +E VS+GSLGLDIALGIGG PKGRIVEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSM-DVETVSTGSLGLDIALGIGGLPKGRIVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIXELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 180

Query: 198 V 198
           +
Sbjct: 181 I 181


>gi|297528273|gb|ADI46172.1| recombination protein A [Rhizobium sp. CCBAU 85049]
          Length = 172

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 143/171 (83%), Positives = 159/171 (92%), Gaps = 1/171 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  SI E IE VS+GSLGLDIALG+GG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNESIVE-IETVSTGSLGLDIALGVGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           GEQALEITD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QARLMS
Sbjct: 122 GEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMS 172


>gi|325651175|emb|CBY89409.1| RecA protein [Sinorhizobium meliloti]
          Length = 176

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 146/176 (82%), Positives = 163/176 (92%), Gaps = 1/176 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI
Sbjct: 2   VDKSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRI 60

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 61  IEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDT 120

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           GEQALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRK
Sbjct: 121 GEQALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRK 176


>gi|254055243|gb|ACT64221.1| RecA [Burkholderia cepacia]
          Length = 187

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 136/188 (72%), Positives = 165/188 (87%), Gaps = 1/188 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+
Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179

Query: 204 RMKIGVMF 211
           RMKIGVMF
Sbjct: 180 RMKIGVMF 187


>gi|33087795|gb|AAP93028.1| recombination protein A [Yersinia bercovieri]
          Length = 182

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 120/184 (65%), Positives = 149/184 (80%), Gaps = 2/184 (1%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGP
Sbjct: 1   LAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALE
Sbjct: 59  ESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  
Sbjct: 119 ICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANT 178

Query: 196 ILVF 199
           +L+F
Sbjct: 179 LLIF 182


>gi|68637453|emb|CAF21823.1| recombinase A [Pediococcus parvulus]
          Length = 200

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 131/200 (65%), Positives = 170/200 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  + +GSL LD ALG+GG+P+GRIV++YGPESSGKTT+ALH +AQ QK GGT A++DA
Sbjct: 1   QIATMPTGSLALDDALGVGGYPRGRIVQVYGPESSGKTTVALHAVAQVQKEGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+ALD +YA+ LGV++ +LL+SQPDTGE+ LEITD LV SGAVD++V+DSVAAL PRAEI
Sbjct: 61  ENALDPVYAKHLGVNIDDLLLSQPDTGEEGLEITDALVSSGAVDLVVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PETT GG AL
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFY+++RL++RR   IKD  
Sbjct: 181 KFYATIRLEVRRAEQIKDGT 200


>gi|47109410|emb|CAG28701.1| recA [Propionibacterium jensenii]
          Length = 204

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 139/204 (68%), Positives = 168/204 (82%), Gaps = 2/204 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           G GA+M+LG + ++   I  + +GS+ LD+ALG+GG P+GRIVEIYGPESSGKTT+ALH 
Sbjct: 2   GVGAVMRLGERETV--KIPAIPTGSVALDVALGVGGLPRGRIVEIYGPESSGKTTVALHA 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q  GG CAF+DAEHALD  YA+ LGVD  NLLISQPD GEQALEI D LVRSGA++
Sbjct: 60  IANAQAEGGVCAFIDAEHALDPEYAKNLGVDTDNLLISQPDNGEQALEIADTLVRSGALE 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAALTP+AEIEGDMG+S  G+QARLMSQALRK+T +++ +    +FINQ+R KI
Sbjct: 120 LIVIDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKMTGALNAAGTTAIFINQLREKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRL 231
           GVMFGSPETTTGG ALKFY+S  L
Sbjct: 180 GVMFGSPETTTGGRALKFYASSHL 203


>gi|68637261|emb|CAF21780.1| recombinase A [Lactobacillus mali]
          Length = 200

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 134/200 (67%), Positives = 165/200 (82%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  VSSGSL LD ALG+GG+P+GRIVE+YGPESSGKTT+ALH +A+ Q  GG  A++DA
Sbjct: 1   QISTVSSGSLALDEALGVGGYPRGRIVEVYGPESSGKTTVALHAVAEVQSNGGVAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+ALD  YA KLGV++  LL+SQPDTGEQ LEI D LV SGA+DI+VIDSVAAL PRAEI
Sbjct: 61  ENALDPAYATKLGVNIDELLLSQPDTGEQGLEIADALVSSGAIDIVVIDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PE T GG AL
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLSGTINKTKTIAIFINQIREKVGVMFGNPEITPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS+VRL++RR   IKD  
Sbjct: 181 KFYSTVRLEVRRAEQIKDGT 200


>gi|9909935|emb|CAC04404.1| RecA protein [Sinorhizobium fredii]
          Length = 177

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 147/178 (82%), Positives = 165/178 (92%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGP
Sbjct: 1   LEAALSQIERSFGKGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S
Sbjct: 120 ITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 177


>gi|171986643|gb|ACB59311.1| RecA [Rhizobium sp. SL-1]
          Length = 177

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 145/178 (81%), Positives = 165/178 (92%), Gaps = 1/178 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LGS  +I E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL 
Sbjct: 1   FGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAV
Sbjct: 60  TIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS C+++FINQ+R
Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCMVIFINQIR 177


>gi|9909741|emb|CAC04337.1| RecA protein [Mycoplana dimorpha]
          Length = 177

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 143/178 (80%), Positives = 164/178 (92%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LEAALSQI+R +GKG+IM+LG++ S+ E IE + +GSLGLDIALGIGG PKGRI+EIYGP
Sbjct: 1   LEAALSQIERSFGKGSIMKLGAKDSVVE-IETIPTGSLGLDIALGIGGLPKGRIIEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPD GEQALE
Sbjct: 60  ESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDNGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ITD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS
Sbjct: 120 ITDALVRSGAIDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRS 177


>gi|29651993|gb|AAO87659.1| RecA [Listeria monocytogenes]
          Length = 180

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 121/182 (66%), Positives = 152/182 (83%), Gaps = 2/182 (1%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKT
Sbjct: 1   QIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKT 58

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LV
Sbjct: 59  TVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALV 118

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FIN
Sbjct: 119 RSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFIN 178

Query: 202 QM 203
           Q+
Sbjct: 179 QI 180


>gi|259906087|gb|ACW84345.1| RecA [Rhizobium sp. F11]
          Length = 171

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 141/170 (82%), Positives = 157/170 (92%), Gaps = 1/170 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  +I E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 3   VDKSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  IEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLM
Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLM 171


>gi|255040345|gb|ACT99985.1| recombinase A [Lactobacillus sp. BL302]
          Length = 201

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 128/201 (63%), Positives = 167/201 (83%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99
            +   I  + SGSL LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A
Sbjct: 1   KVDTQISTIPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAA 60

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           ++DAE+A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL P
Sbjct: 61  YIDAENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVP 120

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           RAEI+GDMG+S  G+QARLMSQALRKL+ +IS++K I VFINQ+R K+GVMFG+PETT G
Sbjct: 121 RAEIDGDMGDSHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGVMFGNPETTPG 180

Query: 220 GNALKFYSSVRLDIRRVGSIK 240
           G ALKFYS++RL++RR   IK
Sbjct: 181 GRALKFYSTIRLEVRRAEQIK 201


>gi|262112800|emb|CBA73299.1| RecA protein [Burkholderia sp. JPY361]
 gi|262112918|emb|CBA73485.1| RecA protein [Burkholderia sp. JPY580]
 gi|262112922|emb|CBA73492.1| RecA protein [Burkholderia sp. JPY582]
          Length = 207

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 153/207 (73%), Positives = 183/207 (88%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +
Sbjct: 1   GGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSD 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQ
Sbjct: 61  LLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK 
Sbjct: 121 ALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKK 180

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEF 268
            D + GN+TRVKVVKNK++ PF++  F
Sbjct: 181 NDEVIGNETRVKVVKNKVSPPFREAIF 207


>gi|162568950|gb|ABY19401.1| RecA [Sinorhizobium medicae]
          Length = 178

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 146/179 (81%), Positives = 165/179 (92%), Gaps = 1/179 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           ALEAAL QI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYG
Sbjct: 1   ALEAALPQIERAFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQAL
Sbjct: 60  PESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           EITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S
Sbjct: 120 EITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 178


>gi|68637422|emb|CAF21816.1| recombinase A [Carnobacterium divergens]
          Length = 200

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 137/200 (68%), Positives = 165/200 (82%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  + SGSL LD+ALG+GGFPKGRIVE+YGPESSGKTT+ALH +A+ QK GG  AF+DA
Sbjct: 1   QISTIPSGSLALDVALGVGGFPKGRIVEVYGPESSGKTTVALHAVAEVQKQGGIAAFIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD  YA+ LGV++  LL+SQPDTGEQ LEI D LV SGAVDI+VIDSVAAL PRAEI
Sbjct: 61  EHALDPQYAQNLGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIVVIDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG S  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PE T GG AL
Sbjct: 121 EGEMGASHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGVMFGNPEITPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFY++VRL++RR   IK+  
Sbjct: 181 KFYATVRLEVRRAKQIKNGT 200


>gi|150171060|emb|CAO01513.1| DNA recombination protein [Burkholderia diffusa]
          Length = 178

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 112/165 (67%), Positives = 144/165 (87%)

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
           QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIR
Sbjct: 1   QARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIR 60

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK 294
           R+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+IDLGV+A IVDK
Sbjct: 61  RIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDK 120

Query: 295 SGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           +GAW+S+ G+++GQG++N++ FLREN EIA  IE+ +R++ G+ A
Sbjct: 121 AGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIRESLGVAA 165


>gi|195928114|gb|ACG55713.1| recombination protein A [Bradyrhizobium sp. ORS336]
          Length = 181

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 131/181 (72%), Positives = 159/181 (87%), Gaps = 1/181 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG        +E VSSGSLGLDIALG+GG PKGRIVEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRIVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 180

Query: 198 V 198
           +
Sbjct: 181 I 181


>gi|68637237|emb|CAF21775.1| recombinase A [Lactobacillus kefiri]
          Length = 200

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 134/200 (67%), Positives = 169/200 (84%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  + SGSL LD ALG+GG+P+G+IVEIYGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   QISTIPSGSLALDDALGVGGYPRGKIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+ALD +YA  LGV++ +LL+SQPDTGEQ L+ITD LV SGA+DI+VIDSVAAL PRAEI
Sbjct: 61  ENALDPVYATHLGVNIDDLLLSQPDTGEQGLQITDALVTSGAIDIVVIDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG AL
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFY+++RL+IRR   IKD  
Sbjct: 181 KFYATIRLEIRRAEQIKDGT 200


>gi|297528249|gb|ADI46160.1| recombination protein A [Rhizobium sp. CCBAU 03287]
          Length = 173

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 138/171 (80%), Positives = 158/171 (92%), Gaps = 1/171 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LG+  S+ E +E +S+GSL LDIALGIGG PKGRI
Sbjct: 4   VDKSKALEAALSQIERSFGKGSIMKLGANESVIE-VETISTGSLSLDIALGIGGLPKGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 63  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMS
Sbjct: 123 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMS 173


>gi|195928218|gb|ACG55765.1| recombination protein A [Bradyrhizobium sp. STM 3956]
          Length = 181

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 134/181 (74%), Positives = 160/181 (88%), Gaps = 1/181 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG        +E VSSGSLGLDIALGIGG PKGRIVEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSM-DVETVSSGSLGLDIALGIGGLPKGRIVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 121 DTLVRSGAVDVMVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 180

Query: 198 V 198
           +
Sbjct: 181 I 181


>gi|68637245|emb|CAF21777.1| recombinase A [Lactobacillus kunkeei]
          Length = 200

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 132/199 (66%), Positives = 166/199 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  V +GSL LD ALG+GGFP+G IVEIYGPESSGKTT+AL  +A+ QK GGT A++DAE
Sbjct: 2   ISTVPTGSLALDNALGVGGFPRGTIVEIYGPESSGKTTIALQAVAEVQKQGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD +YA  LGV++ +LL+SQPDTGEQ L+I D LV SGA+DI+V+DSVAAL PRAEIE
Sbjct: 62  NALDPVYATNLGVNIDDLLLSQPDTGEQGLQICDALVSSGAIDIVVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+P+TT GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGVMFGNPKTTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKDKD 243
           FYS++RL+IRR   IKD  
Sbjct: 182 FYSTIRLEIRRAEQIKDGT 200


>gi|207080793|gb|ACI22740.1| RecA [Rhizobium sp. J3-A127]
          Length = 177

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 143/178 (80%), Positives = 165/178 (92%), Gaps = 1/178 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG+  S+ E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL 
Sbjct: 1   FGKGSIMKLGANESVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAV
Sbjct: 60  TIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS C+++FINQ+R
Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCMVIFINQIR 177


>gi|153870319|ref|ZP_01999744.1| truncated RecA bacterial DNA recombination protein [Beggiatoa sp.
           PS]
 gi|152073207|gb|EDN70248.1| truncated RecA bacterial DNA recombination protein [Beggiatoa sp.
           PS]
          Length = 196

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 118/189 (62%), Positives = 150/189 (79%), Gaps = 1/189 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K +AL   L QI++ +GKGA+M+LG   + F  +E VS+GSLGLDIALG+GG P GR+V
Sbjct: 4   NKKQALATTLKQIEKQFGKGAVMRLGDVSTTF-DVETVSTGSLGLDIALGVGGLPTGRVV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPE+SGKTTL L   A+ QK GG  AFVDAEHALDS YA  +GV++  L +SQP+ G
Sbjct: 63  EIYGPEASGKTTLTLQVTAEMQKKGGLVAFVDAEHALDSRYAENIGVNVSELYLSQPNDG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E+ALEITD LVRSG  D++VIDSVAALTP+AEIEGDMG+   G+QARLMSQALRKLT++I
Sbjct: 123 EEALEITDTLVRSGTFDLVVIDSVAALTPKAEIEGDMGDQHMGLQARLMSQALRKLTANI 182

Query: 191 SRSKCILVF 199
           +R+  +++ 
Sbjct: 183 NRTNTLVIL 191


>gi|262112786|emb|CBA73277.1| RecA protein [Burkholderia sp. JPY345]
 gi|262112790|emb|CBA73283.1| RecA protein [Burkholderia sp. JPY347]
 gi|262112802|emb|CBA73302.1| RecA protein [Burkholderia sp. JPY366]
 gi|262112920|emb|CBA73488.1| RecA protein [Burkholderia sp. JPY581]
          Length = 207

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 152/207 (73%), Positives = 183/207 (88%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +
Sbjct: 1   GGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAAKLGVNVSD 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQ
Sbjct: 61  LLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK 
Sbjct: 121 ALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKK 180

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEF 268
            D + GN+TRVKVVKNK++ PF++  F
Sbjct: 181 NDEVIGNETRVKVVKNKVSPPFREAIF 207


>gi|195928100|gb|ACG55706.1| recombination protein A [Bradyrhizobium sp. ORS301]
 gi|195928106|gb|ACG55709.1| recombination protein A [Bradyrhizobium sp. ORS305]
          Length = 181

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 133/182 (73%), Positives = 160/182 (87%), Gaps = 1/182 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
            AALSQI+R +GKG++M+LG        IE VSSGSLGLDIALGIGG PKGRIVEIYGPE
Sbjct: 1   AAALSQIERQFGKGSVMKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +
Sbjct: 120 CDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTM 179

Query: 197 LV 198
           ++
Sbjct: 180 VI 181


>gi|9909937|emb|CAC04408.1| RecA protein [Sinorhizobium medicae]
          Length = 177

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 146/178 (82%), Positives = 165/178 (92%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGP
Sbjct: 1   LEAALSQIERAFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S
Sbjct: 120 ITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 177


>gi|29651981|gb|AAO87653.1| RecA [Listeria monocytogenes]
 gi|29652114|gb|AAO87718.1| RecA [Listeria monocytogenes]
 gi|29652176|gb|AAO87749.1| RecA [Listeria monocytogenes]
 gi|29652268|gb|AAO87795.1| RecA [Listeria monocytogenes]
 gi|29652296|gb|AAO87809.1| RecA [Listeria monocytogenes]
 gi|29652308|gb|AAO87815.1| RecA [Listeria monocytogenes]
          Length = 183

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 122/185 (65%), Positives = 154/185 (83%), Gaps = 2/185 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MRMKI 207
           +R K+
Sbjct: 179 IREKV 183


>gi|68637458|emb|CAF21824.1| recombinase A [Pediococcus pentosaceus]
          Length = 200

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 130/200 (65%), Positives = 166/200 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  + SGSL LD ALG+GGFPKGRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   QISTIPSGSLALDDALGVGGFPKGRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+A+D  YA  LGVD+ +LL+SQPDTGE+ L I D LV SGA+D++VIDSVAAL PRAEI
Sbjct: 61  ENAMDPAYATNLGVDIDSLLLSQPDTGEEGLAIADALVSSGAIDLVVIDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           +G+MG++  G+QAR+MSQALRKL+ SI+++K I +FINQ+R K+G+MFG+PETT GG AL
Sbjct: 121 DGEMGDAHVGLQARMMSQALRKLSGSINKTKTIALFINQIREKVGIMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFY+++RL++RR   IKD  
Sbjct: 181 KFYATIRLEVRRAEQIKDGA 200


>gi|99866671|gb|ABF67673.1| RecA [Pectobacterium carotovorum]
 gi|99866673|gb|ABF67674.1| RecA [Pectobacterium carotovorum]
 gi|99866675|gb|ABF67675.1| RecA [Pectobacterium carotovorum]
 gi|99866677|gb|ABF67676.1| RecA [Pectobacterium carotovorum]
 gi|99866679|gb|ABF67677.1| RecA [Pectobacterium carotovorum]
 gi|99866681|gb|ABF67678.1| RecA [Pectobacterium carotovorum]
 gi|99866685|gb|ABF67680.1| RecA [Pectobacterium carotovorum]
 gi|115361700|gb|ABF67682.1| RecA [Pectobacterium carotovorum]
          Length = 194

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 142/194 (73%), Positives = 168/194 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD
Sbjct: 1   STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G
Sbjct: 61  PIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+S
Sbjct: 121 DSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDK 242
           VRLDIRR G+IKD 
Sbjct: 181 VRLDIRRTGAIKDG 194


>gi|262112814|emb|CBA73320.1| RecA protein [Burkholderia sp. JPY385]
          Length = 207

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 153/207 (73%), Positives = 183/207 (88%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++ +
Sbjct: 1   GGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVAD 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQ
Sbjct: 61  LLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK 
Sbjct: 121 ALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKK 180

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEF 268
            D + GN+TRVKVVKNK+A PF++  F
Sbjct: 181 NDEVIGNETRVKVVKNKVAPPFREAIF 207


>gi|68637348|emb|CAF21801.1| recombinase A [Lactobacillus suebicus]
          Length = 200

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 132/200 (66%), Positives = 167/200 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  VSSGSL L+ ALG+GG+P+GRIVE+YGPESSGKTT+ALH +A+ Q  GGT A++DA
Sbjct: 1   QIATVSSGSLALNDALGVGGYPRGRIVEMYGPESSGKTTVALHAVAEVQHQGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+ALD  YA  LGV++ +LL+SQP+TGE+ LEI D L+ SGAVDI+V+DSVAAL PRAEI
Sbjct: 61  ENALDPQYAEALGVNIDDLLLSQPNTGEKGLEIADALITSGAVDIVVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PETT GG AL
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS++RL+IRR   IKD  
Sbjct: 181 KFYSTIRLEIRRAEQIKDGT 200


>gi|262112668|emb|CBA73095.1| RecA protein [Burkholderia sp. JPY156]
 gi|262112672|emb|CBA73102.1| RecA protein [Burkholderia sp. JPY158]
 gi|262112678|emb|CBA73111.1| RecA protein [Burkholderia sp. JPY161]
 gi|262112680|emb|CBA73114.1| RecA protein [Burkholderia sp. JPY162]
 gi|262112690|emb|CBA73130.1| RecA protein [Burkholderia sp. JPY169]
 gi|262112692|emb|CBA73134.1| RecA protein [Burkholderia sp. JPY170]
 gi|262112694|emb|CBA73136.1| RecA protein [Burkholderia sp. JPY171]
 gi|262112698|emb|CBA73142.1| RecA protein [Burkholderia sp. JPY251]
 gi|262112700|emb|CBA73145.1| RecA protein [Burkholderia sp. JPY255]
 gi|262112702|emb|CBA73148.1| RecA protein [Burkholderia sp. JPY256]
 gi|262112704|emb|CBA73151.1| RecA protein [Burkholderia sp. JPY257]
 gi|262112718|emb|CBA73173.1| RecA protein [Burkholderia sp. JPY270]
 gi|262112740|emb|CBA73206.1| RecA protein [Burkholderia sp. JPY284]
 gi|262112742|emb|CBA73209.1| RecA protein [Burkholderia sp. JPY285]
 gi|262112744|emb|CBA73212.1| RecA protein [Burkholderia sp. JPY286]
 gi|262112746|emb|CBA73215.1| RecA protein [Burkholderia sp. JPY288]
 gi|262112758|emb|CBA73234.1| RecA protein [Burkholderia sp. JPY303]
 gi|262112760|emb|CBA73237.1| RecA protein [Burkholderia sp. JPY306]
 gi|262112762|emb|CBA73240.1| RecA protein [Burkholderia sp. JPY307]
 gi|262112764|emb|CBA73242.1| RecA protein [Burkholderia sp. JPY309]
 gi|262112766|emb|CBA73245.1| RecA protein [Burkholderia sp. JPY310]
 gi|262112768|emb|CBA73248.1| RecA protein [Burkholderia sp. JPY312]
 gi|262112770|emb|CBA73251.1| RecA protein [Burkholderia sp. JPY314]
 gi|262112772|emb|CBA73254.1| RecA protein [Burkholderia sp. JPY315]
 gi|262112774|emb|CBA73257.1| RecA protein [Burkholderia sp. JPY317]
 gi|262112778|emb|CBA73263.1| RecA protein [Burkholderia sp. JPY323]
 gi|262112780|emb|CBA73266.1| RecA protein [Burkholderia sp. JPY324]
 gi|262112782|emb|CBA73270.1| RecA protein [Burkholderia sp. JPY325]
 gi|262112784|emb|CBA73274.1| RecA protein [Burkholderia sp. JPY326]
 gi|262112804|emb|CBA73305.1| RecA protein [Burkholderia sp. JPY368]
 gi|262112822|emb|CBA73334.1| RecA protein [Burkholderia sp. JPY395]
 gi|262112824|emb|CBA73337.1| RecA protein [Burkholderia sp. JPY396]
 gi|262112826|emb|CBA73341.1| RecA protein [Burkholderia sp. JPY401]
 gi|262112828|emb|CBA73344.1| RecA protein [Burkholderia sp. JPY403]
 gi|262112832|emb|CBA73351.1| RecA protein [Burkholderia sp. JPY406]
 gi|262112834|emb|CBA73354.1| RecA protein [Burkholderia sp. JPY407]
 gi|262112836|emb|CBA73357.1| RecA protein [Burkholderia sp. JPY409]
 gi|262112838|emb|CBA73360.1| RecA protein [Burkholderia sp. JPY410]
 gi|262112840|emb|CBA73363.1| RecA protein [Burkholderia sp. JPY411]
 gi|262112846|emb|CBA73371.1| RecA protein [Burkholderia sp. JPY417]
 gi|262112848|emb|CBA73374.1| RecA protein [Burkholderia sp. JPY418]
 gi|262112850|emb|CBA73376.1| RecA protein [Burkholderia sp. JPY419]
 gi|262112852|emb|CBA73378.1| RecA protein [Burkholderia sp. JPY420]
 gi|262112854|emb|CBA73381.1| RecA protein [Burkholderia sp. JPY421]
 gi|262112856|emb|CBA73385.1| RecA protein [Burkholderia sp. JPY422]
 gi|262112858|emb|CBA73388.1| RecA protein [Burkholderia sp. JPY425]
 gi|262112860|emb|CBA73389.1| RecA protein [Burkholderia sp. JPY430]
 gi|262112862|emb|CBA73392.1| RecA protein [Burkholderia sp. JPY431]
 gi|262112864|emb|CBA73396.1| RecA protein [Burkholderia sp. JPY432]
 gi|262112872|emb|CBA73408.1| RecA protein [Burkholderia sp. JPY449]
 gi|262112876|emb|CBA73414.1| RecA protein [Burkholderia sp. JPY453]
 gi|262112878|emb|CBA73417.1| RecA protein [Burkholderia sp. JPY454]
 gi|262112884|emb|CBA73428.1| RecA protein [Burkholderia sp. JPY465]
 gi|262112886|emb|CBA73431.1| RecA protein [Burkholderia sp. JPY467]
 gi|262112888|emb|CBA73433.1| RecA protein [Burkholderia sp. JPY468]
 gi|262112890|emb|CBA73436.1| RecA protein [Burkholderia sp. JPY471]
 gi|262112892|emb|CBA73440.1| RecA protein [Burkholderia sp. JPY472]
 gi|262112894|emb|CBA73444.1| RecA protein [Burkholderia sp. JPY476]
 gi|262112896|emb|CBA73447.1| RecA protein [Burkholderia sp. JPY478]
 gi|262112898|emb|CBA73450.1| RecA protein [Burkholderia sp. JPY480]
 gi|262112900|emb|CBA73453.1| RecA protein [Burkholderia sp. JPY481]
 gi|262112902|emb|CBA73456.1| RecA protein [Burkholderia sp. JPY484]
 gi|262112904|emb|CBA73459.1| RecA protein [Burkholderia sp. JPY485]
 gi|262112906|emb|CBA73461.1| RecA protein [Burkholderia sp. JPY487]
 gi|262112908|emb|CBA73466.1| RecA protein [Burkholderia sp. JPY489]
 gi|262112910|emb|CBA73469.1| RecA protein [Burkholderia sp. JPY490]
 gi|262112912|emb|CBA73472.1| RecA protein [Burkholderia sp. JPY492]
 gi|262112914|emb|CBA73475.1| RecA protein [Burkholderia sp. JPY504]
 gi|262112928|emb|CBA73500.1| RecA protein [Burkholderia sp. JPY595]
 gi|262112930|emb|CBA73503.1| RecA protein [Burkholderia sp. JPY602]
 gi|262112932|emb|CBA73506.1| RecA protein [Burkholderia sp. JPY604]
 gi|262112934|emb|CBA73509.1| RecA protein [Burkholderia sp. JPY605]
 gi|262112936|emb|CBA73512.1| RecA protein [Burkholderia sp. JPY622]
 gi|262112938|emb|CBA73515.1| RecA protein [Burkholderia sp. JPY623]
 gi|262112942|emb|CBA73521.1| RecA protein [Burkholderia sp. JPY634]
 gi|262112944|emb|CBA73524.1| RecA protein [Burkholderia sp. JPY636]
 gi|262112946|emb|CBA73526.1| RecA protein [Burkholderia sp. JPY637]
          Length = 207

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 153/207 (73%), Positives = 183/207 (88%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +
Sbjct: 1   GGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVAD 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQ
Sbjct: 61  LLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK 
Sbjct: 121 ALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKK 180

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEF 268
            D + GN+TRVKVVKNK++ PF++  F
Sbjct: 181 NDEVIGNETRVKVVKNKVSPPFREAIF 207


>gi|195928128|gb|ACG55720.1| recombination protein A [Bradyrhizobium sp. ORS354]
          Length = 181

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 133/182 (73%), Positives = 161/182 (88%), Gaps = 1/182 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
            AALSQI+R +GKG++M+LG +      IE VSSGSLGLDIALGIGG PKGRIVEIYGPE
Sbjct: 1   AAALSQIERQFGKGSVMKLG-KSDRSMDIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +
Sbjct: 120 CDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTM 179

Query: 197 LV 198
           ++
Sbjct: 180 VI 181


>gi|160375145|gb|ABX38948.1| recombinase protein A [Mesorhizobium caraganae]
          Length = 165

 Score =  200 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 126/161 (78%), Positives = 147/161 (91%), Gaps = 1/161 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 5   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 64  VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+S
Sbjct: 124 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDS 164


>gi|68637227|emb|CAF21773.1| recombinase A [Lactobacillus jensenii]
          Length = 200

 Score =  200 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 123/200 (61%), Positives = 166/200 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  + +GSL LD A+G+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   QISTIPTGSLALDAAIGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI
Sbjct: 61  ENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           +G+MG+S  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG AL
Sbjct: 121 DGEMGDSHVGLQARLMSQALRKLSGNINKTKTIALFINQIREKVGVMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS++RL++RR   IK   
Sbjct: 181 KFYSTIRLEVRRAEQIKQSS 200


>gi|29652084|gb|AAO87704.1| RecA [Listeria monocytogenes]
 gi|29652244|gb|AAO87783.1| RecA [Listeria monocytogenes]
 gi|29652264|gb|AAO87793.1| RecA [Listeria monocytogenes]
          Length = 184

 Score =  200 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 123/186 (66%), Positives = 155/186 (83%), Gaps = 2/186 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MRMKIG 208
           +R K+G
Sbjct: 179 IREKVG 184


>gi|29652037|gb|AAO87681.1| RecA [Listeria monocytogenes]
          Length = 184

 Score =  200 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 124/186 (66%), Positives = 155/186 (83%), Gaps = 2/186 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVDI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDILVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MRMKIG 208
           +R K+G
Sbjct: 179 IREKVG 184


>gi|115498191|gb|ABI98675.1| RecA [Rhizobium sp. CCBAU 33220]
          Length = 183

 Score =  200 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 145/184 (78%), Positives = 170/184 (92%), Gaps = 1/184 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LGS  ++ E IE +S+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL 
Sbjct: 1   FGKGSMMKLGSNENVVE-IETISTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAV
Sbjct: 60  TIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMK
Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMK 179

Query: 207 IGVM 210
           IGVM
Sbjct: 180 IGVM 183


>gi|110002963|emb|CAJ57768.1| recombinase A [Rhizobium leguminosarum]
          Length = 166

 Score =  200 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 133/166 (80%), Positives = 154/166 (92%), Gaps = 1/166 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QAR
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQAR 165


>gi|33087787|gb|AAP93024.1| recombination protein A [Yersinia bercovieri]
          Length = 176

 Score =  200 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 121/178 (67%), Positives = 146/178 (82%), Gaps = 2/178 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 1   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 58

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 59  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 118

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  
Sbjct: 119 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 176


>gi|89145056|emb|CAJ57536.1| recombinase A [Agromyces albus]
          Length = 207

 Score =  200 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 146/207 (70%), Positives = 170/207 (82%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL LH IA +Q+ GG  AFVDAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DMLV
Sbjct: 1   TLTLHAIANAQRAGGIAAFVDAEHALDPDYAKKLGVDIDALLVSQPDTGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG++D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  ++++   ++FIN
Sbjct: 61  RSGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIFIN 120

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA 
Sbjct: 121 QLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKMAP 180

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVK 288
           PFKQ EFDI+YG GIS  G LID GV 
Sbjct: 181 PFKQAEFDILYGIGISREGSLIDYGVD 207


>gi|298205324|gb|ADI61873.1| recombinase protein A [Mesorhizobium sp. JS9]
          Length = 183

 Score =  200 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 143/184 (77%), Positives = 168/184 (91%), Gaps = 1/184 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG+     E IE  S+GSLGLDIALG+GG P+GRIVEIYGPESSGKTT+ALH
Sbjct: 1   FGKGSVMRLGANEKSVE-IETASTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTMALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS  +++FINQ+RMK
Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMK 179

Query: 207 IGVM 210
           IGVM
Sbjct: 180 IGVM 183


>gi|9909939|emb|CAC04409.1| RecA protein [Sinorhizobium meliloti]
 gi|315518965|dbj|BAJ51856.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519011|dbj|BAJ51853.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519013|dbj|BAJ51852.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519015|dbj|BAJ51851.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519017|dbj|BAJ51850.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519019|dbj|BAJ51849.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519027|dbj|BAJ51845.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519029|dbj|BAJ51844.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519031|dbj|BAJ51843.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519033|dbj|BAJ51842.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519035|dbj|BAJ51841.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519048|dbj|BAJ51866.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519050|dbj|BAJ51867.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519052|dbj|BAJ51868.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519054|dbj|BAJ51869.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519056|dbj|BAJ51870.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519058|dbj|BAJ51871.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519060|dbj|BAJ51872.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519062|dbj|BAJ51873.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
          Length = 177

 Score =  200 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 146/178 (82%), Positives = 165/178 (92%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGP
Sbjct: 1   LEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S
Sbjct: 120 ITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 177


>gi|6694819|gb|AAF25404.1|AF214757_1 RecA protein [Arthrobacter sp. 'SMCC G915']
          Length = 205

 Score =  200 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 141/204 (69%), Positives = 172/204 (84%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KL
Sbjct: 1   DVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDAEHALDPEYAAKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD   LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIEGDMG+S  G+Q
Sbjct: 61  GVDTDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           ARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR
Sbjct: 121 ARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRR 180

Query: 236 VGSIKDKDSITGNQTRVKVVKNKM 259
           + ++K+     GN+T+ K+VKNKM
Sbjct: 181 IQTLKEGADSVGNRTKAKIVKNKM 204


>gi|315518967|dbj|BAJ51857.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315518969|dbj|BAJ51858.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315518971|dbj|BAJ51859.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315518973|dbj|BAJ51860.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315518975|dbj|BAJ51861.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315518977|dbj|BAJ51862.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315518979|dbj|BAJ51863.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315518981|dbj|BAJ51864.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519007|dbj|BAJ51855.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519009|dbj|BAJ51854.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519021|dbj|BAJ51848.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519023|dbj|BAJ51847.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519025|dbj|BAJ51846.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|315519046|dbj|BAJ51865.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
          Length = 177

 Score =  200 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 147/178 (82%), Positives = 165/178 (92%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGP
Sbjct: 1   LEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S
Sbjct: 120 ITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 177


>gi|160947824|gb|ABX54721.1| RecA protein [Rhizobium leguminosarum]
 gi|160947832|gb|ABX54725.1| RecA protein [Rhizobium leguminosarum]
 gi|160947840|gb|ABX54729.1| RecA protein [Rhizobium leguminosarum]
 gi|160947850|gb|ABX54734.1| RecA protein [Rhizobium leguminosarum]
          Length = 168

 Score =  200 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 131/166 (78%), Positives = 151/166 (90%), Gaps = 1/166 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P
Sbjct: 4   EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLP 62

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 63  RGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 122

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SL
Sbjct: 123 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSL 168


>gi|300089401|gb|ADJ67852.1| recombination repair protein [Photobacterium jeanii]
          Length = 205

 Score =  200 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 148/203 (72%), Positives = 177/203 (87%)

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
             GG P GRIVEIYGPESSGKTTL L  IA +QK G TCAF+DAEHALD IYA+KLGVD+
Sbjct: 3   SAGGLPMGRIVEIYGPESSGKTTLTLEAIACAQKAGKTCAFIDAEHALDPIYAQKLGVDI 62

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
             LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++
Sbjct: 63  DQLLVSQPDTGEQALEICDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARML 122

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+I
Sbjct: 123 SQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAI 182

Query: 240 KDKDSITGNQTRVKVVKNKMASP 262
           K+ D + GN+TR+KVVKNK+A+P
Sbjct: 183 KEGDEVVGNETRIKVVKNKVAAP 205


>gi|68635333|emb|CAF21741.1| recombinase A [Lactobacillus acidipiscis]
          Length = 200

 Score =  200 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 132/200 (66%), Positives = 166/200 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  + SGSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ Q  GGT A++DA
Sbjct: 1   QILTIPSGSLALDEALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQAQGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+ALD +YA  LGV++  LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEI
Sbjct: 61  ENALDPVYASALGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG AL
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFY+++RL+I+R   IKD  
Sbjct: 181 KFYATIRLEIKRAEQIKDGS 200


>gi|207109040|ref|ZP_03243202.1| recombinase A [Helicobacter pylori HPKX_438_CA4C1]
          Length = 210

 Score =  200 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 114/207 (55%), Positives = 159/207 (76%), Gaps = 2/207 (0%)

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+RMK
Sbjct: 3   DLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMK 62

Query: 207 IGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           IG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+ + KVVKNK+A PF++
Sbjct: 63  IGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKNKVAPPFRE 122

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
            EFDIM+GEGIS  GE+ID GVK  IVDKSGAW S++ ++LGQGREN+K  L+E+  +A+
Sbjct: 123 AEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALAD 182

Query: 326 NIESLLRQNAGLVADSLLQEPAINTKD 352
            I   ++++ G   + ++  P    ++
Sbjct: 183 EITLKIKESIG-SNEEIMPLPDEPLEE 208


>gi|33087819|gb|AAP93040.1| recombination protein A [Yersinia frederiksenii]
          Length = 181

 Score =  200 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 120/183 (65%), Positives = 150/183 (81%), Gaps = 2/183 (1%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 58

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L 
Sbjct: 59  TLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALT 118

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FIN
Sbjct: 119 RSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFIN 178

Query: 202 QMR 204
           Q+R
Sbjct: 179 QIR 181


>gi|68637382|emb|CAF21809.1| recombinase A [Leuconostoc fallax]
          Length = 200

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 133/199 (66%), Positives = 167/199 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E + SGS+ LDIALG+GG+PKGRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   VETIPSGSVKLDIALGVGGYPKGRIIEVYGPESSGKTTIALHAVAEVQKQGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +AL+  YA  LGVD K LL+SQPDTGEQ LEI D LV+SGAVD+IV+DS+AAL PRAEIE
Sbjct: 62  NALNVKYAEALGVDSKELLLSQPDTGEQGLEIADALVQSGAVDMIVVDSIAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG++  G+QARLMSQALRKL  +++R+  I +FINQ+R K+GVMFG+PETT GG ALK
Sbjct: 122 GEMGDAHVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKDKD 243
           FYS+VRL++RR   IKD  
Sbjct: 182 FYSTVRLEVRRSTQIKDGS 200


>gi|195928104|gb|ACG55708.1| recombination protein A [Bradyrhizobium sp. ORS304]
 gi|195928124|gb|ACG55718.1| recombination protein A [Bradyrhizobium sp. ORS343]
          Length = 181

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 132/181 (72%), Positives = 159/181 (87%), Gaps = 1/181 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG        +E VSSGSLGLDIALG+GG PKGRIVEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRIVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIA 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 121 DTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 180

Query: 198 V 198
           +
Sbjct: 181 I 181


>gi|23194269|gb|AAN15082.1| RecA protein [Vibrio cholerae]
          Length = 203

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 145/203 (71%), Positives = 178/203 (87%)

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
           IALG GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLG
Sbjct: 1   IALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLG 60

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           V++  LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QA
Sbjct: 61  VNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQA 120

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           R++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR 
Sbjct: 121 RMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRT 180

Query: 237 GSIKDKDSITGNQTRVKVVKNKM 259
           G+IK+ + + GN+TR+KVVKNK+
Sbjct: 181 GAIKEGEEVVGNETRIKVVKNKI 203


>gi|115498195|gb|ABI98677.1| RecA [Rhizobium sp. CCBAU 65255]
          Length = 183

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 144/184 (78%), Positives = 170/184 (92%), Gaps = 1/184 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LGS  ++ E IE +S+GSLGLD ALG+GG PKGRI+EIYGPESSGKTTLAL 
Sbjct: 1   FGKGSVMELGSNENVIE-IETISTGSLGLDTALGVGGLPKGRIIEIYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAV
Sbjct: 60  TIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMK
Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMK 179

Query: 207 IGVM 210
           IGVM
Sbjct: 180 IGVM 183


>gi|67904924|emb|CAF21761.1| recombinase A [Lactobacillus durianis]
          Length = 200

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 135/200 (67%), Positives = 167/200 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  VSSGS+ LD ALG+GG+P+GRIVE+YGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   KIATVSSGSIALDDALGVGGYPRGRIVEMYGPESSGKTTVALHAVAEVQKQGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+ALD  YA  LGV++  LL+SQPDTGE+ LEI D L+ SGAVDI+VIDSVAAL PRAEI
Sbjct: 61  ENALDPQYAEALGVNIDALLLSQPDTGEEGLEIADALISSGAVDIVVIDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PETT GG AL
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS++RL+IRR   IKD  
Sbjct: 181 KFYSTIRLEIRRAEQIKDGT 200


>gi|29651971|gb|AAO87648.1| RecA [Listeria monocytogenes]
 gi|29652029|gb|AAO87677.1| RecA [Listeria monocytogenes]
 gi|29652035|gb|AAO87680.1| RecA [Listeria monocytogenes]
 gi|29652178|gb|AAO87750.1| RecA [Listeria monocytogenes]
 gi|29652256|gb|AAO87789.1| RecA [Listeria monocytogenes]
 gi|29652280|gb|AAO87801.1| RecA [Listeria monocytogenes]
 gi|29652294|gb|AAO87808.1| RecA [Listeria monocytogenes]
          Length = 182

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 122/184 (66%), Positives = 153/184 (83%), Gaps = 2/184 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MRMK 206
           +R K
Sbjct: 179 IREK 182


>gi|115498187|gb|ABI98673.1| RecA [Sinorhizobium sp. CCBAU 33036]
          Length = 182

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 148/183 (80%), Positives = 170/183 (92%), Gaps = 1/183 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL 
Sbjct: 1   FGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+
Sbjct: 60  TIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 120 DVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 179

Query: 207 IGV 209
           IGV
Sbjct: 180 IGV 182


>gi|68637339|emb|CAF21799.1| recombinase A [Lactobacillus sakei subsp. sakei]
          Length = 200

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 133/200 (66%), Positives = 168/200 (84%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +  VSSGSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   QVSTVSSGSLALDEALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQKQGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+A+D  YA  LGV++ +LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEI
Sbjct: 61  ENAMDPKYATALGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDILVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PE T GG AL
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPEVTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS+VRL++RR  +IK+  
Sbjct: 181 KFYSTVRLEVRRAETIKNGT 200


>gi|89145183|emb|CAJ57527.1| recombinase A [Microbacterium maritypicum]
          Length = 208

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 145/208 (69%), Positives = 171/208 (82%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ GG  AF+DAEHALD  YA KLGVD+  LL+SQPDTGEQALEI DMLVRSGA+D
Sbjct: 1   IANAQRAGGIAAFIDAEHALDPDYAAKLGVDIDALLVSQPDTGEQALEIADMLVRSGAID 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  ++++   ++FINQ+R KI
Sbjct: 61  LIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLREKI 120

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GV FGSPETT GG ALKFY+SVR+DIRR+ ++KD     GN+TRVKVVKNKMA PFKQ E
Sbjct: 121 GVFFGSPETTAGGKALKFYASVRMDIRRIETLKDGTDAVGNRTRVKVVKNKMAPPFKQAE 180

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKS 295
           FDI+YG GIS  G LID GV+ +IV KS
Sbjct: 181 FDILYGVGISREGSLIDFGVEHAIVKKS 208


>gi|9909580|emb|CAC04277.1| RecA protein [Agrobacterium tumefaciens]
          Length = 171

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 140/172 (81%), Positives = 158/172 (91%), Gaps = 1/172 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRIVEIYGP
Sbjct: 1   LEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRIVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           ITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT
Sbjct: 120 ITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLT 171


>gi|308522644|dbj|BAJ22933.1| DNA recombination protein [Aliivibrio sp. LC2-088]
          Length = 212

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 148/212 (69%), Positives = 184/212 (86%)

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           +GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQ
Sbjct: 1   FGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQ 60

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEI D L RSGAVD++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +
Sbjct: 61  ALEICDALARSGAVDVMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQ 120

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+
Sbjct: 121 SNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVIGNETRI 180

Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           KVVKNK+A+PFKQ E  I+YG+G +  GELID
Sbjct: 181 KVVKNKIAAPFKQAETQILYGKGFNREGELID 212


>gi|331029419|gb|AEC49859.1| recombinase A [Bradyrhizobium sp. SEMIA 6395]
          Length = 179

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 134/180 (74%), Positives = 159/180 (88%), Gaps = 1/180 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKAL AALSQI+R +GKG++M+LG +      IE VSSGSLGLDIALGIGG PKGRIVEI
Sbjct: 1   SKALAAALSQIERQFGKGSVMKLG-KSDRSMDIEAVSSGSLGLDIALGIGGLPKGRIVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+  ++
Sbjct: 120 ALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAXXNK 179


>gi|254055247|gb|ACT64223.1| RecA [Pectobacterium carotovorum]
          Length = 186

 Score =  199 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 125/188 (66%), Positives = 156/188 (82%), Gaps = 2/188 (1%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTL 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RS
Sbjct: 59  TLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+
Sbjct: 119 GAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQI 178

Query: 204 RMKIGVMF 211
           RMKIGVMF
Sbjct: 179 RMKIGVMF 186


>gi|118767305|gb|ABL11488.1| RecA [Rhizobium leguminosarum bv. viciae]
          Length = 174

 Score =  199 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 138/175 (78%), Positives = 161/175 (92%), Gaps = 1/175 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           SQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGK
Sbjct: 1   SQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGK 59

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD L
Sbjct: 60  TTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTL 119

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           VRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S  
Sbjct: 120 VRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNT 174


>gi|29652031|gb|AAO87678.1| RecA [Listeria monocytogenes]
 gi|29652033|gb|AAO87679.1| RecA [Listeria monocytogenes]
 gi|29652056|gb|AAO87690.1| RecA [Listeria monocytogenes]
 gi|29652076|gb|AAO87700.1| RecA [Listeria monocytogenes]
          Length = 180

 Score =  199 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 121/182 (66%), Positives = 152/182 (83%), Gaps = 2/182 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MR 204
           +R
Sbjct: 179 IR 180


>gi|68637188|emb|CAF21766.1| recombinase A [Lactobacillus fuchuensis]
          Length = 200

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 133/200 (66%), Positives = 167/200 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  VSSGSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ Q+ GGT A++DA
Sbjct: 1   QISTVSSGSLALDEALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQRQGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+A+D  YA  LGV++  LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEI
Sbjct: 61  ENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADALVSSGAVDILVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PE T GG AL
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPEITPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS+VRL++RR  +IK+  
Sbjct: 181 KFYSTVRLEVRRAETIKNGT 200


>gi|117675775|emb|CAL69158.1| recombinase A [Agromyces cerinus subsp. cerinus]
          Length = 208

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 145/207 (70%), Positives = 169/207 (81%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DMLVR
Sbjct: 1   LTLHAIANAQRNGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIADMLVR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG++D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  +S++   ++FINQ
Sbjct: 61  SGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLSQTNTTMIFINQ 120

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA P
Sbjct: 121 LREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETMKDGTEAVGNRTRVKVVKNKMAPP 180

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKA 289
           FKQ EFDI+YG GIS  G LID GV  
Sbjct: 181 FKQAEFDILYGTGISREGSLIDFGVDQ 207


>gi|68635358|emb|CAF21747.1| recombinase A [Lactobacillus amylovorus]
          Length = 200

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 125/200 (62%), Positives = 164/200 (82%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  V +GSL LD A+G+GG+P+GRI+EIYGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   QISTVPTGSLALDAAIGVGGYPRGRIIEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI
Sbjct: 61  ENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++   +QARLMSQALRKL+  IS++K I +FINQ+R K+GVMFG+PETT GG AL
Sbjct: 121 EGEMGDAHVRLQARLMSQALRKLSGPISKTKTIAIFINQIREKVGVMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS++RL++RR   IK   
Sbjct: 181 KFYSTIRLEVRRAEQIKQSG 200


>gi|33087877|gb|AAP93069.1| recombination protein A [Yersinia rohdei]
          Length = 178

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 120/180 (66%), Positives = 146/180 (81%), Gaps = 2/180 (1%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEI
Sbjct: 1   QKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEI 58

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQ
Sbjct: 59  YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQ 118

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  
Sbjct: 119 ALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKN 178


>gi|262112776|emb|CBA73260.1| RecA protein [Burkholderia sp. JPY321]
          Length = 207

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 153/207 (73%), Positives = 183/207 (88%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  
Sbjct: 1   GGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPE 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQ
Sbjct: 61  LLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT +I ++ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK 
Sbjct: 121 ALRKLTGTIKKTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKK 180

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEF 268
            D + G++TRVKVVKNK++ PF++  F
Sbjct: 181 NDEVIGSETRVKVVKNKVSPPFREAVF 207


>gi|9909861|emb|CAC04378.1| RecA protein [Phyllobacterium myrsinacearum]
          Length = 173

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 139/174 (79%), Positives = 160/174 (91%), Gaps = 1/174 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L+AALSQI+R +GKG+IM+L +   + E IE VS+GSL LDIALG+GG PKGRIVEIYGP
Sbjct: 1   LDAALSQIERAFGKGSIMRLETNEQVVE-IETVSTGSLSLDIALGVGGLPKGRIVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           ITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 120 ITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 173


>gi|68637172|emb|CAF21764.1| recombinase A [Lactobacillus fornicalis]
          Length = 200

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 125/200 (62%), Positives = 166/200 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  V +GSL LD A+G+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   QISTVPTGSLALDAAIGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI
Sbjct: 61  ENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG AL
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLSGNISKTKTIAIFINQIREKVGVMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS++RL++RR   IK   
Sbjct: 181 KFYSTIRLEVRRAEQIKQSG 200


>gi|325650634|emb|CBY89500.1| RecA protein [Rhizobium leguminosarum]
          Length = 183

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 129/162 (79%), Positives = 149/162 (91%), Gaps = 1/162 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLP 
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPR 161


>gi|68637256|emb|CAF21779.1| recombinase A [Lactobacillus intestinalis]
          Length = 200

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 128/200 (64%), Positives = 166/200 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  V +GS+ LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   QISTVPTGSIALDAALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI
Sbjct: 61  ENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EGDMG++  G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG AL
Sbjct: 121 EGDMGDAHVGLQARLMSQALRKLSGTISKTKTIALFINQIREKVGVMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS++RL++RR   IK   
Sbjct: 181 KFYSTIRLEVRRAEQIKQSG 200


>gi|262112666|emb|CBA73092.1| RecA protein [Burkholderia sp. JPY155]
 gi|262112674|emb|CBA73105.1| RecA protein [Burkholderia sp. JPY159]
 gi|262112676|emb|CBA73108.1| RecA protein [Burkholderia sp. JPY160]
 gi|262112682|emb|CBA73117.1| RecA protein [Burkholderia sp. JPY164]
 gi|262112684|emb|CBA73120.1| RecA protein [Burkholderia sp. JPY166]
 gi|262112686|emb|CBA73123.1| RecA protein [Burkholderia sp. JPY167]
 gi|262112688|emb|CBA73127.1| RecA protein [Burkholderia sp. JPY168]
 gi|262112696|emb|CBA73139.1| RecA protein [Burkholderia sp. JPY250]
 gi|262112706|emb|CBA73153.1| RecA protein [Burkholderia sp. JPY258]
 gi|262112708|emb|CBA73156.1| RecA protein [Burkholderia sp. JPY259]
 gi|262112710|emb|CBA73161.1| RecA protein [Burkholderia sp. JPY262]
 gi|262112720|emb|CBA73176.1| RecA protein [Burkholderia sp. JPY271]
 gi|262112722|emb|CBA73179.1| RecA protein [Burkholderia sp. JPY272]
 gi|262112724|emb|CBA73183.1| RecA protein [Burkholderia sp. JPY276]
 gi|262112726|emb|CBA73186.1| RecA protein [Burkholderia sp. JPY277]
 gi|262112728|emb|CBA73189.1| RecA protein [Burkholderia sp. JPY278]
 gi|262112730|emb|CBA73192.1| RecA protein [Burkholderia sp. JPY279]
 gi|262112732|emb|CBA73195.1| RecA protein [Burkholderia sp. JPY280]
 gi|262112734|emb|CBA73197.1| RecA protein [Burkholderia sp. JPY281]
 gi|262112736|emb|CBA73200.1| RecA protein [Burkholderia sp. JPY282]
 gi|262112738|emb|CBA73203.1| RecA protein [Burkholderia sp. JPY283]
 gi|262112748|emb|CBA73218.1| RecA protein [Burkholderia sp. JPY294]
 gi|262112750|emb|CBA73221.1| RecA protein [Burkholderia sp. JPY296]
 gi|262112752|emb|CBA73224.1| RecA protein [Burkholderia sp. JPY298]
 gi|262112754|emb|CBA73227.1| RecA protein [Burkholderia sp. JPY300]
 gi|262112756|emb|CBA73230.1| RecA protein [Burkholderia sp. JPY301]
 gi|262112788|emb|CBA73280.1| RecA protein [Burkholderia sp. JPY346]
 gi|262112792|emb|CBA73287.1| RecA protein [Burkholderia sp. JPY349]
 gi|262112794|emb|CBA73290.1| RecA protein [Burkholderia sp. JPY350]
 gi|262112796|emb|CBA73293.1| RecA protein [Burkholderia sp. JPY351]
 gi|262112808|emb|CBA73312.1| RecA protein [Burkholderia sp. JPY381]
 gi|262112810|emb|CBA73315.1| RecA protein [Burkholderia sp. JPY382]
 gi|262112816|emb|CBA73324.1| RecA protein [Burkholderia sp. JPY386]
 gi|262112818|emb|CBA73327.1| RecA protein [Burkholderia sp. JPY388]
 gi|262112830|emb|CBA73347.1| RecA protein [Burkholderia sp. JPY404]
 gi|262112842|emb|CBA73365.1| RecA protein [Burkholderia sp. JPY413]
 gi|262112844|emb|CBA73368.1| RecA protein [Burkholderia sp. JPY414]
 gi|262112866|emb|CBA73399.1| RecA protein [Burkholderia sp. JPY434]
 gi|262112868|emb|CBA73402.1| RecA protein [Burkholderia sp. JPY439]
 gi|262112880|emb|CBA73421.1| RecA protein [Burkholderia sp. JPY456]
 gi|262112916|emb|CBA73478.1| RecA protein [Burkholderia sp. JPY578]
 gi|262112924|emb|CBA73495.1| RecA protein [Burkholderia sp. JPY585]
 gi|262112926|emb|CBA73497.1| RecA protein [Burkholderia sp. JPY587]
          Length = 207

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 154/207 (74%), Positives = 183/207 (88%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  
Sbjct: 1   GGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYAAKLGVNVPE 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQ
Sbjct: 61  LLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT +I ++ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK 
Sbjct: 121 ALRKLTGTIKKTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKK 180

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEF 268
            D + G++TRVKVVKNK++ PF++  F
Sbjct: 181 NDEVIGSETRVKVVKNKVSPPFREAVF 207


>gi|212286496|dbj|BAG82896.1| RecA protein [Rhizobium sp. Pt1-Nf14]
          Length = 175

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 139/175 (79%), Positives = 161/175 (92%), Gaps = 1/175 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           ++LEAALS I+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI+EIY
Sbjct: 2   RSLEAALSHIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIY 60

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQA
Sbjct: 61  GPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQA 120

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           LEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+
Sbjct: 121 LEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTA 175


>gi|68637463|emb|CAF21825.1| recombinase A [Aerococcus urinaeequi]
          Length = 200

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 135/199 (67%), Positives = 167/199 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  V +GSL LDI+LG+GG+P+GRI+E+YGPESSGKTT++LH IA+ QK GG  AF+DAE
Sbjct: 2   ISTVPTGSLTLDISLGVGGYPRGRIIEVYGPESSGKTTVSLHAIAEVQKRGGIAAFIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +ALD  YA KLGV++  LL+SQPDTGEQ LEI D LV SGA+DIIV+DSVAAL PRAEIE
Sbjct: 62  NALDPEYAAKLGVNVDELLLSQPDTGEQGLEIADALVSSGAIDIIVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFGSPETT GG ALK
Sbjct: 122 GEMGDSHIGLQARLMSQALRKLSGTINKTKTIAIFINQIREKVGVMFGSPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKDKD 243
           FYS+VRL++RR   IK+  
Sbjct: 182 FYSTVRLEVRRGEQIKESG 200


>gi|168805222|gb|ACA28693.1| recombinase protein A [Mesorhizobium sp. CCBAU 11214]
 gi|168805228|gb|ACA28696.1| recombinase protein A [Mesorhizobium sp. CCBAU 11231]
 gi|168805238|gb|ACA28701.1| recombinase protein A [Mesorhizobium huakuii]
 gi|168805240|gb|ACA28702.1| recombinase protein A [Mesorhizobium sp. CCBAU 11185]
          Length = 162

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 124/160 (77%), Positives = 146/160 (91%), Gaps = 1/160 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 4   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 63  IEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+
Sbjct: 123 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGD 162


>gi|262112812|emb|CBA73317.1| RecA protein [Burkholderia sp. JPY384]
          Length = 207

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 155/207 (74%), Positives = 183/207 (88%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  
Sbjct: 1   GGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYAAKLGVNVPE 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQ
Sbjct: 61  LLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT +I ++ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK 
Sbjct: 121 ALRKLTGTIKKTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKK 180

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEF 268
            D + G++TRVKVVKNK+A PF++  F
Sbjct: 181 NDEVIGSETRVKVVKNKVAPPFREAVF 207


>gi|164416466|gb|ABY53583.1| recombinase A [Pediococcus damnosus]
 gi|164416468|gb|ABY53584.1| recombinase A [Pediococcus damnosus]
 gi|164416470|gb|ABY53585.1| recombinase A [Pediococcus damnosus]
 gi|164416472|gb|ABY53586.1| recombinase A [Pediococcus damnosus]
 gi|164416474|gb|ABY53587.1| recombinase A [Pediococcus damnosus]
 gi|164416476|gb|ABY53588.1| recombinase A [Pediococcus damnosus]
 gi|164416478|gb|ABY53589.1| recombinase A [Pediococcus damnosus]
 gi|164416480|gb|ABY53590.1| recombinase A [Pediococcus damnosus]
 gi|164416482|gb|ABY53591.1| recombinase A [Pediococcus damnosus]
 gi|164416484|gb|ABY53592.1| recombinase A [Pediococcus damnosus]
 gi|164416486|gb|ABY53593.1| recombinase A [Pediococcus damnosus]
          Length = 194

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 132/194 (68%), Positives = 167/194 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LD ALG+GG+P+GRIVE+YGPESSGKTT+ALH +AQ QK GGT A++DAE+AL
Sbjct: 1   ISTGSLPLDDALGVGGYPRGRIVEVYGPESSGKTTVALHAVAQVQKEGGTAAYIDAENAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YA  LGV++ +LL+SQPDTGE+ LEITD LV SGAVD++V+DSVAAL PRAEIEG+M
Sbjct: 61  DPVYAEHLGVNIDDLLLSQPDTGEEGLEITDALVSSGAVDLVVVDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G++  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PE T GG ALKFY+
Sbjct: 121 GDAHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPEVTPGGRALKFYA 180

Query: 228 SVRLDIRRVGSIKD 241
           ++RL IRR   IKD
Sbjct: 181 TIRLKIRRAEQIKD 194


>gi|29652047|gb|AAO87686.1| RecA [Listeria monocytogenes]
 gi|29652088|gb|AAO87706.1| RecA [Listeria monocytogenes]
          Length = 179

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 120/181 (66%), Positives = 151/181 (83%), Gaps = 2/181 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 M 203
           +
Sbjct: 179 I 179


>gi|68637315|emb|CAF21794.1| recombinase A [Lactobacillus pontis]
          Length = 200

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 132/200 (66%), Positives = 169/200 (84%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  +SSGSL +D ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ Q+ GGT A++DA
Sbjct: 1   KIATISSGSLAIDKALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQRQGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+ALD  YA  LGVD+ NLL+SQPDTGE+ LEI D L+ SGAVD++V+DSVAAL PRAEI
Sbjct: 61  ENALDPQYAEALGVDVDNLLLSQPDTGEEGLEIADALISSGAVDLVVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL+  I+++K I +FINQ+R K+GVMFG+PETTTGG+AL
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTTGGSAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS++R++IRR   IK+  
Sbjct: 181 KFYSTIRMEIRRAEQIKNGT 200


>gi|307343424|emb|CBJ18153.1| recombinase A [Micromonospora sp. SG16]
          Length = 188

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 136/188 (72%), Positives = 161/188 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDALLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVRLDIRR 235
           SVRLD+RR
Sbjct: 181 SVRLDVRR 188


>gi|168805218|gb|ACA28691.1| recombinase protein A [Mesorhizobium sp. CCBAU 11196]
 gi|168805220|gb|ACA28692.1| recombinase protein A [Mesorhizobium sp. CCBAU 11206]
 gi|168805224|gb|ACA28694.1| recombinase protein A [Mesorhizobium sp. CCBAU 11217]
 gi|168805226|gb|ACA28695.1| recombinase protein A [Mesorhizobium sp. CCBAU 11226]
 gi|168805234|gb|ACA28699.1| recombinase protein A [Mesorhizobium septentrionale]
 gi|168805236|gb|ACA28700.1| recombinase protein A [Mesorhizobium sp. CCBAU 11257]
          Length = 162

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 125/160 (78%), Positives = 146/160 (91%), Gaps = 1/160 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 4   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 63  VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+
Sbjct: 123 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGD 162


>gi|89143233|emb|CAJ57511.1| recombinase A [Microbacterium aurantiacum]
          Length = 207

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 145/207 (70%), Positives = 170/207 (82%)

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTL LH IA  Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DM
Sbjct: 1   KTTLTLHAIANVQRAGGIAAFIDAEHALDPDYAQKLGVDIDALLVSQPDTGEQALEIADM 60

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           LVRSGA+D++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  ++++   ++F
Sbjct: 61  LVRSGAIDLVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIF 120

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           INQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKM
Sbjct: 121 INQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKM 180

Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLG 286
           A PFKQ EFDI+YG GIS  G LID G
Sbjct: 181 APPFKQAEFDILYGVGISREGSLIDFG 207


>gi|307343398|emb|CBJ18140.1| recombinase A [Micromonospora sp. GUI42]
          Length = 192

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 136/192 (70%), Positives = 164/192 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHAL
Sbjct: 1   IPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVRLDIRRVGSI 239
           SVRLD+RR+ S+
Sbjct: 181 SVRLDVRRIESL 192


>gi|110002961|emb|CAJ57767.1| recombinase A [Rhizobium gallicum]
          Length = 166

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 134/166 (80%), Positives = 153/166 (92%), Gaps = 1/166 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSL LDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLSLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QAR
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQAR 165


>gi|68637193|emb|CAF21767.1| recombinase A [Lactobacillus gallinarum]
          Length = 200

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 125/200 (62%), Positives = 166/200 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  V +GSL LD A+G+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   QISTVPTGSLALDAAIGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI
Sbjct: 61  ENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG AL
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS++RL++RR   IK   
Sbjct: 181 KFYSTIRLEVRRAEQIKQSG 200


>gi|32481310|gb|AAP84003.1| catalase [Vibrio cholerae]
          Length = 210

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 147/209 (70%), Positives = 183/209 (87%)

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQ
Sbjct: 2   GRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQ 61

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKL
Sbjct: 62  PDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKL 121

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + 
Sbjct: 122 TGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVV 181

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEG 275
           GN+TR+KVVKNK+A+PFK+    IMYG+G
Sbjct: 182 GNETRIKVVKNKIAAPFKEANTQIMYGQG 210


>gi|307343426|emb|CBJ18154.1| recombinase A [Micromonospora sp. SGA3]
          Length = 188

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 136/188 (72%), Positives = 161/188 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YAR LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYARALGVDTDALLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVRLDIRR 235
           SVRLD+RR
Sbjct: 181 SVRLDVRR 188


>gi|29652015|gb|AAO87670.1| RecA [Listeria monocytogenes]
 gi|29652302|gb|AAO87812.1| RecA [Listeria monocytogenes]
          Length = 181

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 121/183 (66%), Positives = 152/183 (83%), Gaps = 2/183 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178

Query: 203 MRM 205
           +R 
Sbjct: 179 IRE 181


>gi|68637373|emb|CAF21807.1| recombinase A [Leuconostoc carnosum]
          Length = 200

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 133/200 (66%), Positives = 165/200 (82%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E + SGS+ LDIALG+GG+PKGRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   QVETIPSGSVKLDIALGVGGYPKGRIIEVYGPESSGKTTIALHAVAEVQKQGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+AL+  YA  LGV    LL+SQPDTGEQ LEI D LV+SGAVD+IVIDSVAAL PRAEI
Sbjct: 61  ENALNVKYAEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDMIVIDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL  +++R+  I +FINQ+R K+GVMFG+PETT GG AL
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS+VRL++RR   IKD  
Sbjct: 181 KFYSTVRLEVRRSTQIKDGT 200


>gi|9909988|emb|CAC04415.1| RecA protein [Sinorhizobium terangae]
          Length = 177

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 143/178 (80%), Positives = 163/178 (91%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGP
Sbjct: 1   LEAALSQIERSFGKGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L TIA++Q  GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE
Sbjct: 60  ESSGKTTLELQTIAEAQNKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S
Sbjct: 120 ITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 177


>gi|45825430|gb|AAS77564.1| RecA protein [Bradyrhizobium sp. ICMP 14753]
 gi|45825432|gb|AAS77565.1| RecA protein [Bradyrhizobium sp. ICMP 14754]
          Length = 177

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 135/178 (75%), Positives = 158/178 (88%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AALSQI+R +GKG++M+LG        IE VSSGSLGLDIALGIGG PKGRIVEIYGP
Sbjct: 1   LAAALSQIERQFGKGSVMKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           I D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 120 ICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 177


>gi|45825426|gb|AAS77562.1| RecA protein [Bradyrhizobium sp. ICMP 14291]
 gi|45825428|gb|AAS77563.1| RecA protein [Bradyrhizobium sp. ICMP 14752]
          Length = 177

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 132/178 (74%), Positives = 158/178 (88%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AALSQI+R +GKG++M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGP
Sbjct: 1   LAAALSQIERQFGKGSVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           I D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 120 ICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 177


>gi|291246121|gb|ADD85185.1| RecA [Borrelia recurrentis]
          Length = 219

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 131/215 (60%), Positives = 180/215 (83%), Gaps = 1/215 (0%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           + +GKG+++++G    + + +E + SG + LD A+GIGG+P+GR+VEI+GPESSGKTTL 
Sbjct: 1   KDFGKGSLIKMGE-SPVGKYLESIPSGFILLDEAIGIGGYPRGRVVEIFGPESSGKTTLT 59

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA+ QKTGG  AF+DAEHALD +YAR LGV++  L +SQPDTGEQAL+I + L+RSG
Sbjct: 60  LQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQPDTGEQALDIAEYLIRSG 119

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            VD+IV+DSVAAL P+AEI+G+MG++  G+QARLMS+ALRK+T+ +S+S   ++FINQ+R
Sbjct: 120 GVDLIVVDSVAALMPQAEIDGEMGDTQIGLQARLMSKALRKITAILSKSNACIMFINQIR 179

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           MKIG++FGSPETTTGGNALKFYSS+RL++R+V  +
Sbjct: 180 MKIGLVFGSPETTTGGNALKFYSSLRLEVRKVEQV 214


>gi|115498183|gb|ABI98671.1| RecA [Sinorhizobium sp. CCBAU 53044]
          Length = 183

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 149/184 (80%), Positives = 171/184 (92%), Gaps = 1/184 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL 
Sbjct: 1   FGKGSVMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+
Sbjct: 60  TIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 120 DILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 179

Query: 207 IGVM 210
           IGVM
Sbjct: 180 IGVM 183


>gi|68635362|emb|CAF21748.1| recombinase A [Lactobacillus animalis]
 gi|68637274|emb|CAF21783.1| recombinase A [Lactobacillus murinus]
          Length = 200

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 132/200 (66%), Positives = 164/200 (82%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  V SGSL LD ALG+GGFP+GRIVEIYGPESSGKTT+AL  +A+ QK GG  A++DA
Sbjct: 1   QISTVPSGSLALDEALGVGGFPRGRIVEIYGPESSGKTTVALQAVAEVQKQGGLAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+ALD  YA  LGV++ +LL+SQP TGE+ L+I D LV SGAVDI+VIDSVAAL P+AEI
Sbjct: 61  ENALDPAYATALGVNIDDLLLSQPGTGEEGLQIADALVSSGAVDIVVIDSVAALVPKAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG AL
Sbjct: 121 EGEMGDSHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS++RL++RR   IKD  
Sbjct: 181 KFYSTIRLEVRRAEQIKDGS 200


>gi|68637353|emb|CAF21802.1| recombinase A [Lactobacillus ingluviei]
          Length = 200

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 130/200 (65%), Positives = 169/200 (84%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +  VSSGSL +D ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ Q+ GGT A++DA
Sbjct: 1   KVATVSSGSLAIDEALGVGGYPRGRIIEMYGPESSGKTTVALHAVAEVQQQGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+A+D  YA+ LGVD+ NLL+SQPDTGEQ L+I D L+ SGA+DI+V+DSVAAL PRAEI
Sbjct: 61  ENAMDPEYAKALGVDIDNLLLSQPDTGEQGLQIADALISSGAIDIVVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG AL
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLSGTINKTKTIAIFINQIREKVGVMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS++RL+IRR   IKD  
Sbjct: 181 KFYSTIRLEIRRGEPIKDGS 200


>gi|29652054|gb|AAO87689.1| RecA [Listeria monocytogenes]
          Length = 181

 Score =  198 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 119/183 (65%), Positives = 151/183 (82%), Gaps = 2/183 (1%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           ++ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGP
Sbjct: 1   IDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK 
Sbjct: 119 IAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKT 178

Query: 196 ILV 198
           I +
Sbjct: 179 IAI 181


>gi|68637153|emb|CAF21758.1| recombinase A [Lactobacillus curvatus]
          Length = 200

 Score =  198 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 133/200 (66%), Positives = 168/200 (84%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +  VSSGSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   QVSTVSSGSLALDEALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQKQGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+A+D  YA  LGV++ +LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEI
Sbjct: 61  ENAMDPKYATALGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDILVVDSVAALMPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PE T GG AL
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPEVTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS+VRL++RR  +IK+  
Sbjct: 181 KFYSTVRLEVRRAETIKNGT 200


>gi|68637213|emb|CAF21771.1| recombinase A [Lactobacillus hamsteri]
          Length = 200

 Score =  198 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 124/200 (62%), Positives = 166/200 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  V +GS+ LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   QISTVPTGSIALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI
Sbjct: 61  ENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG AL
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS++RL++R+   IK   
Sbjct: 181 KFYSTIRLEVRKAEQIKQSG 200


>gi|193795036|gb|ACF21654.1| RecA [Rhizobium leguminosarum]
          Length = 165

 Score =  198 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 132/165 (80%), Positives = 153/165 (92%), Gaps = 1/165 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EI
Sbjct: 1   SKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QAR
Sbjct: 120 ALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQAR 164


>gi|300089405|gb|ADJ67854.1| recombination repair protein [Photobacterium jeanii]
          Length = 209

 Score =  198 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 149/209 (71%), Positives = 181/209 (86%)

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL L  IA +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI 
Sbjct: 1   SGKTTLTLEAIACAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEIC 60

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ 
Sbjct: 61  DALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMC 120

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKN
Sbjct: 121 IFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKN 180

Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLG 286
           K+A+PFKQ E  I+YG+G +  GELIDLG
Sbjct: 181 KVAAPFKQAETQILYGQGFNRNGELIDLG 209


>gi|68637378|emb|CAF21808.1| recombinase A [Leuconostoc pseudomesenteroides]
          Length = 200

 Score =  198 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 134/200 (67%), Positives = 165/200 (82%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E + SGS+ LDIALG+GG+PKGRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   QVETIPSGSVKLDIALGVGGYPKGRIIEVYGPESSGKTTIALHAVAEVQKQGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+ALD  YA  LGV    LL+SQPDTGEQ LEI D LV+SGAVD+IVIDSVAAL PRAEI
Sbjct: 61  ENALDVKYAEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDMIVIDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL  +++R+  I +FINQ+R K+GVMFG+PETT GG AL
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS+VRL++RR   IKD  
Sbjct: 181 KFYSTVRLEVRRSTQIKDGT 200


>gi|325650818|emb|CBY89592.1| RecA protein [Rhizobium leguminosarum]
          Length = 175

 Score =  198 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 136/176 (77%), Positives = 162/176 (92%), Gaps = 1/176 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTT
Sbjct: 1   IERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVR
Sbjct: 60  LALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           SGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S  +++
Sbjct: 120 SGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNTMVI 175


>gi|262112870|emb|CBA73405.1| RecA protein [Burkholderia sp. JPY441]
 gi|262112940|emb|CBA73518.1| RecA protein [Burkholderia sp. JPY629]
          Length = 207

 Score =  198 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 152/207 (73%), Positives = 182/207 (87%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA +LGV++  
Sbjct: 1   GGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYAAQLGVNVPE 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARL SQ
Sbjct: 61  LLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLWSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           ALRKLT +I ++ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK 
Sbjct: 121 ALRKLTGTIKKTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKK 180

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEF 268
            D + G++TRVKVVKNK++ PF++  F
Sbjct: 181 NDEVIGSETRVKVVKNKVSPPFREAVF 207


>gi|68637404|emb|CAF21813.1| recombinase A [Leuconostoc citreum]
          Length = 200

 Score =  198 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 135/200 (67%), Positives = 163/200 (81%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE   SGS+ LD+ALG+GG+PKGRI+EIYGPESSGKTTLALH +A+ QK GGT A++DA
Sbjct: 1   QIETYPSGSVKLDVALGVGGYPKGRIIEIYGPESSGKTTLALHAVAEVQKAGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+A +  YA  LGV    LL+SQPDTGEQ LEI D LV+SGAVDIIV+DSVAAL PRAEI
Sbjct: 61  ENAFNVKYAEALGVQKDELLLSQPDTGEQGLEIADALVQSGAVDIIVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRKL  +++R+  I +FINQ+R KIGVMFG+PETT GG AL
Sbjct: 121 EGEMGDSHVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGVMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS++RL++RR   IKD  
Sbjct: 181 KFYSTIRLEVRRSTQIKDGT 200


>gi|89145054|emb|CAJ57535.1| recombinase A [Microbacterium thalassium]
          Length = 206

 Score =  198 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 145/206 (70%), Positives = 170/206 (82%)

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTL LH IA  QK GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI D
Sbjct: 1   GKTTLTLHAIANVQKAGGIAAFIDAEHALDPDYAQKLGVDIDALLVSQPDTGEQALEIAD 60

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           ML+RSGA+D++VIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKLT  ++++K   +
Sbjct: 61  MLIRSGAIDLVVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLTGGLNQTKTTAI 120

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNK
Sbjct: 121 FINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGSDAVGNRTRVKVVKNK 180

Query: 259 MASPFKQVEFDIMYGEGISFFGELID 284
           MA PFKQ EFDI+YG GIS  G LID
Sbjct: 181 MAPPFKQAEFDILYGVGISREGSLID 206


>gi|115498179|gb|ABI98669.1| RecA [Rhizobium sp. CCBAU 23084]
          Length = 183

 Score =  198 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 147/184 (79%), Positives = 169/184 (91%), Gaps = 1/184 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LGS  +I E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL 
Sbjct: 1   FGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE+ALEITD LVRSGAV
Sbjct: 60  TIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGERALEITDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++VIDSVAALTPRAEIEG+ G+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMK
Sbjct: 120 DVLVIDSVAALTPRAEIEGETGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMK 179

Query: 207 IGVM 210
           IGVM
Sbjct: 180 IGVM 183


>gi|67904926|emb|CAF21803.1| recombinase A [Lactobacillus vaccinostercus]
          Length = 200

 Score =  198 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 134/200 (67%), Positives = 166/200 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  VSSGS+ LD ALG+GG+P+G IVE+YGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   KIATVSSGSIALDDALGVGGYPRGPIVEMYGPESSGKTTVALHAVAEVQKQGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+ALD  YA  LGV++  LL+SQPDTGE+ LEI D L+ SGAVDI+VIDSVAAL PRAEI
Sbjct: 61  ENALDPQYAEALGVNIDALLLSQPDTGEEGLEIADALISSGAVDIVVIDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PETT GG AL
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS++RL+IRR   IKD  
Sbjct: 181 KFYSTIRLEIRRAEQIKDGT 200


>gi|162568948|gb|ABY19400.1| RecA [Sinorhizobium medicae]
          Length = 176

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 145/177 (81%), Positives = 164/177 (92%), Gaps = 1/177 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           EAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPE
Sbjct: 1   EAALSQIERAFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           TD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S
Sbjct: 120 TDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 176


>gi|68637149|emb|CAF21757.1| recombinase A [Lactobacillus crispatus]
          Length = 200

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 125/200 (62%), Positives = 166/200 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  V +GSL L+ A+G+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   QISTVPTGSLALNAAIGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI
Sbjct: 61  ENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG AL
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS+VRL++RR   IK   
Sbjct: 181 KFYSTVRLEVRRAEQIKQSG 200


>gi|45825434|gb|AAS77566.1| RecA protein [Bradyrhizobium liaoningense]
          Length = 177

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 135/178 (75%), Positives = 158/178 (88%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AALSQI+R +GKG++M+LG        IE VSSGSLGLDIALGIGG PKGRIVEIYGP
Sbjct: 1   LAAALSQIERQFGKGSVMKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           I D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 120 ICDTLVRSGAVDVMVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 177


>gi|217037921|gb|ACJ76430.1| RecA [Bradyrhizobium sp. STM 3564]
          Length = 173

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 135/174 (77%), Positives = 154/174 (88%), Gaps = 1/174 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKAL AALSQI+R +GKG++M+LG        IE VSSGSLGLDIALGIGG PKGRIVEI
Sbjct: 1   SKALAAALSQIERQFGKGSVMKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           ALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKL
Sbjct: 120 ALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKL 173


>gi|68637208|emb|CAF21770.1| recombinase A [Lactobacillus helveticus]
          Length = 200

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 124/200 (62%), Positives = 166/200 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  V +GSL LD A+G+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   QISTVPTGSLALDAAIGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI
Sbjct: 61  ENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL+ +IS++K I +FINQ+R K+G+MFG+PETT GG AL
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGIMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS++RL++RR   IK   
Sbjct: 181 KFYSTIRLEVRRAEQIKQSG 200


>gi|254055253|gb|ACT64226.1| RecA [Pseudomonas sp. CMR12a]
 gi|254055255|gb|ACT64227.1| RecA [Pseudomonas sp. CMR5c]
          Length = 186

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 132/188 (70%), Positives = 159/188 (84%), Gaps = 2/188 (1%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           +R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL
Sbjct: 1   ERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTL 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS
Sbjct: 59  TLSVIAQAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
            AVD+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+
Sbjct: 119 NAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQI 178

Query: 204 RMKIGVMF 211
           RMKIGVMF
Sbjct: 179 RMKIGVMF 186


>gi|6694844|gb|AAF25429.1|AF214782_1 RecA protein [Arthrobacter ureafaciens]
          Length = 207

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 144/207 (69%), Positives = 173/207 (83%)

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD   LL+SQ
Sbjct: 1   GRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPDYAAKLGVDTDALLVSQ 60

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI DMLV SG++DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+
Sbjct: 61  PDTGEQALEIMDMLVGSGSLDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 120

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+     
Sbjct: 121 TGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIQTLKEGADSV 180

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYG 273
           GN+T+ K+VKNKMA PFK  EFDI+YG
Sbjct: 181 GNRTKAKIVKNKMAPPFKIAEFDIIYG 207


>gi|160947842|gb|ABX54730.1| RecA protein [Rhizobium leguminosarum]
 gi|160947854|gb|ABX54736.1| RecA protein [Rhizobium leguminosarum]
          Length = 166

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 129/164 (78%), Positives = 149/164 (90%), Gaps = 1/164 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P
Sbjct: 4   EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLP 62

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 63  RGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 122

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+
Sbjct: 123 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGD 166


>gi|68637418|emb|CAF21815.1| recombinase A [Carnobacterium maltaromaticum]
          Length = 200

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 132/200 (66%), Positives = 165/200 (82%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +  + SGSL LD+ALG+GG+PKGRI+E+YGPESSGKTT++LH +A++QK GGT AF+DA
Sbjct: 1   QVLTIPSGSLALDVALGVGGYPKGRILEVYGPESSGKTTVSLHAVAEAQKHGGTAAFIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD  YA  LGV++  L +SQPDTGEQALEI D LV SGA+DI+V+DSVAAL PRAEI
Sbjct: 61  EHALDPKYAAALGVNIDELFLSQPDTGEQALEIADALVSSGAIDIVVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG S  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PE T GG AL
Sbjct: 121 EGEMGHSHVGLQARLMSQALRKLSGSINKTKTIGLFINQIREKVGVMFGNPEVTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFY++VRL++RR   IK   
Sbjct: 181 KFYATVRLEVRRAEQIKTGT 200


>gi|110002965|emb|CAJ57769.1| recombinase A [Agrobacterium rhizogenes]
          Length = 166

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 135/166 (81%), Positives = 153/166 (92%), Gaps = 1/166 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           QALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QAR
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQAR 165


>gi|68637203|emb|CAF21769.1| recombinase A [Lactobacillus graminis]
          Length = 200

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 131/200 (65%), Positives = 167/200 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +  VSSGSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   QVSTVSSGSLALDEALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQKQGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+A+D  YA  LGV++ +LL+SQPDTGEQ LEI D L+ SGAVDI+V+DSVAAL PRAEI
Sbjct: 61  ENAMDPKYATALGVNIDDLLLSQPDTGEQGLEIADALISSGAVDILVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQA RKL+ +I+++K I +FINQ+R K+GVMFG+PE T GG AL
Sbjct: 121 EGEMGDAHVGLQARLMSQAYRKLSGTINKTKTIALFINQIREKVGVMFGNPEITPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS+VRL++RR  +IK+  
Sbjct: 181 KFYSTVRLEVRRAETIKNGT 200


>gi|254055203|gb|ACT64201.1| RecA [Pseudomonas sp. R11-23-07]
 gi|254055205|gb|ACT64202.1| RecA [Pseudomonas sp. R11-45-07]
 gi|254055207|gb|ACT64203.1| RecA [Pseudomonas sp. R2-7-07]
 gi|254055209|gb|ACT64204.1| RecA [Pseudomonas sp. R4-35-07]
 gi|254055211|gb|ACT64205.1| RecA [Pseudomonas sp. R4-34-07]
 gi|254055213|gb|ACT64206.1| RecA [Pseudomonas sp. R14-24-07]
 gi|254055215|gb|ACT64207.1| RecA [Pseudomonas sp. R5-89-07]
 gi|254055217|gb|ACT64208.1| RecA [Pseudomonas sp. R5-90-07]
 gi|254055219|gb|ACT64209.1| RecA [Pseudomonas sp. L1-11-07]
 gi|254055221|gb|ACT64210.1| RecA [Pseudomonas fluorescens]
          Length = 186

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 132/188 (70%), Positives = 159/188 (84%), Gaps = 2/188 (1%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           +R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL
Sbjct: 1   ERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTL 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS
Sbjct: 59  TLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
            A+D+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+
Sbjct: 119 NAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQI 178

Query: 204 RMKIGVMF 211
           RMKIGVMF
Sbjct: 179 RMKIGVMF 186


>gi|110002993|emb|CAJ57783.1| recombinase A [Sinorhizobium saheli]
          Length = 166

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 135/166 (81%), Positives = 154/166 (92%), Gaps = 1/166 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQAR
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQAR 165


>gi|45825422|gb|AAS77560.1| RecA protein [Bradyrhizobium sp. ICMP 14533]
          Length = 177

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 133/178 (74%), Positives = 157/178 (88%), Gaps = 1/178 (0%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L AALSQI+R +GKG++M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGP
Sbjct: 1   LAAALSQIERQFGKGSVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALE
Sbjct: 60  ESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALE 119

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           I D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 120 ICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 177


>gi|254055235|gb|ACT64217.1| RecA [Pseudomonas aeruginosa]
 gi|254055237|gb|ACT64218.1| RecA [Pseudomonas aeruginosa]
 gi|254055239|gb|ACT64219.1| RecA [Pseudomonas aeruginosa]
 gi|254055241|gb|ACT64220.1| RecA [Pseudomonas aeruginosa]
          Length = 186

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 131/188 (69%), Positives = 160/188 (85%), Gaps = 2/188 (1%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           +R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL
Sbjct: 1   ERQFGKGAVMRMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTL 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS
Sbjct: 59  TLSVIAEAQKQGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
            AVD+I++DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T +I  + C+++FINQ+
Sbjct: 119 NAVDVIIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNIKNANCLVIFINQI 178

Query: 204 RMKIGVMF 211
           RMKIGVMF
Sbjct: 179 RMKIGVMF 186


>gi|110002955|emb|CAJ57764.1| recombinase A [Agrobacterium tumefaciens]
          Length = 166

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 134/166 (80%), Positives = 152/166 (91%), Gaps = 1/166 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QAR
Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQAR 165


>gi|164416351|gb|ABY53531.1| recombinase A [Pediococcus parvulus]
 gi|164416353|gb|ABY53532.1| recombinase A [Pediococcus parvulus]
 gi|164416355|gb|ABY53533.1| recombinase A [Pediococcus parvulus]
 gi|164416357|gb|ABY53534.1| recombinase A [Pediococcus parvulus]
 gi|164416359|gb|ABY53535.1| recombinase A [Pediococcus parvulus]
 gi|164416361|gb|ABY53536.1| recombinase A [Pediococcus parvulus]
 gi|164416363|gb|ABY53537.1| recombinase A [Pediococcus parvulus]
 gi|164416365|gb|ABY53538.1| recombinase A [Pediococcus parvulus]
          Length = 194

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 130/194 (67%), Positives = 167/194 (86%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            + +GSL LD ALG+GG+P+GRIVE+YGPESSGKTT+ALH +AQ QK GGT A++DAE+A
Sbjct: 1   TMPTGSLALDDALGVGGYPRGRIVEVYGPESSGKTTVALHAVAQVQKEGGTAAYIDAENA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YA  LGV++ +LL+SQPDTGE+ LEITD LV SGAVD++V+DSVAAL PRAEIEG+
Sbjct: 61  LDPVYAEHLGVNIDDLLLSQPDTGEEGLEITDALVSSGAVDLVVVDSVAALVPRAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG++  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY
Sbjct: 121 MGDAHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFY 180

Query: 227 SSVRLDIRRVGSIK 240
           +++RL++RR   IK
Sbjct: 181 ATIRLEVRRAEQIK 194


>gi|99866631|gb|ABF67653.1| RecA [Pectobacterium carotovorum]
          Length = 204

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 141/204 (69%), Positives = 172/204 (84%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA + + G TCAF+DAEHALD
Sbjct: 1   STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAXREGKTCAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYA+KLGVD+ NLL SQPDTGEQA EI D L RSGAVD+I++DS AALTP+AEIEG++G
Sbjct: 61  PIYAKKLGVDIXNLLCSQPDTGEQAXEIXDALTRSGAVDVIIVDSXAALTPKAEIEGEIG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+ AR+MSQA+RKL  ++ ++  +L+ INQ+RMKIGVMFG+PETTTGGNALKFY+S
Sbjct: 121 DSHMGLXARMMSQAMRKLAGNLXQANTLLIXINQIRMKIGVMFGNPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDKDSITGNQTRV 252
           VRLDIRR G+IK+ + + G++TRV
Sbjct: 181 VRLDIRRTGAIKEGEEVVGSETRV 204


>gi|89143237|emb|CAJ57513.1| recombinase A [Microbacterium aurum]
          Length = 203

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 144/203 (70%), Positives = 168/203 (82%)

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL LH IA  Q+ GG  AFVDAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI 
Sbjct: 1   SGKTTLTLHAIANVQRAGGIAAFVDAEHALDPDYAQKLGVDIDQLLVSQPDTGEQALEIA 60

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           DMLVRSGA+D++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  ++++   +
Sbjct: 61  DMLVRSGAIDLVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTM 120

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           +FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKN
Sbjct: 121 IFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKN 180

Query: 258 KMASPFKQVEFDIMYGEGISFFG 280
           KMA PFKQ EFDI+YG GIS  G
Sbjct: 181 KMAPPFKQAEFDILYGVGISREG 203


>gi|118767303|gb|ABL11487.1| RecA [Rhizobium leguminosarum bv. viciae]
          Length = 174

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 137/175 (78%), Positives = 160/175 (91%), Gaps = 1/175 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           SQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGK
Sbjct: 1   SQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGK 59

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD L
Sbjct: 60  TTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTL 119

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           VRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKL +SIS+S  
Sbjct: 120 VRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLXASISKSNT 174


>gi|110002957|emb|CAJ57765.1| recombinase A [Agrobacterium rubi]
 gi|295810386|emb|CBL81077.1| recombinase A [Agrobacterium sp. NCPPB 1650]
          Length = 166

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 135/166 (81%), Positives = 152/166 (91%), Gaps = 1/166 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  SI E +E +S+GSL LD+ALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNESIVE-VETISTGSLSLDVALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLHNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           QALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLPG+QAR
Sbjct: 120 QALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQAR 165


>gi|110002967|emb|CAJ57770.1| recombinase A [Rhizobium galegae]
          Length = 166

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 138/166 (83%), Positives = 153/166 (92%), Gaps = 1/166 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS  +I E IE VS+GSL LDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           QALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLPG+QAR
Sbjct: 120 QALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQAR 165


>gi|262112874|emb|CBA73411.1| RecA protein [Burkholderia sp. JPY452]
          Length = 207

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 153/207 (73%), Positives = 182/207 (87%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  
Sbjct: 1   GGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYAAKLGVNVPE 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQ
Sbjct: 61  LLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
            LRKLT +I ++ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK 
Sbjct: 121 ELRKLTGTIKKTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKK 180

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEF 268
            D + G++TRVKVVKNK++ PF++  F
Sbjct: 181 NDKVIGSETRVKVVKNKVSPPFREAVF 207


>gi|118767307|gb|ABL11489.1| RecA [Rhizobium sp. PEVF03]
          Length = 178

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 140/179 (78%), Positives = 164/179 (91%), Gaps = 2/179 (1%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL+  L QI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYG
Sbjct: 2   ALKRPL-QIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQAL
Sbjct: 60  PESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           EITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 EITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 178


>gi|291246088|gb|ADD85172.1| RecA [Borrelia duttonii]
          Length = 231

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 119/220 (54%), Positives = 171/220 (77%), Gaps = 2/220 (0%)

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GV++  L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAALTP+AEI+G+MG++  G+Q
Sbjct: 1   GVNINELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALTPQAEIDGEMGDTQIGLQ 60

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           ARLMS+ALRK+T+ +S+S   ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R+
Sbjct: 61  ARLMSKALRKITAILSKSNTCIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRK 120

Query: 236 VGSI--KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVD 293
           V  +     D++ GN+ RVKVVKNK+A PF++ E  + +G+GIS    ++D  +K ++V 
Sbjct: 121 VEQVIGSSSDNVIGNKIRVKVVKNKVAPPFRKAELIVYFGKGISREASILDAAIKYNLVQ 180

Query: 294 KSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           KSG+W++     LGQGREN   +L +   +A  +E+ LR+
Sbjct: 181 KSGSWYAMGDDNLGQGRENVIEYLFKEKALANELENKLRK 220


>gi|256809261|gb|ACV30731.1| recombinase A [Ochrobactrum anthropi]
 gi|256809263|gb|ACV30732.1| recombinase A [Ochrobactrum anthropi]
 gi|256809265|gb|ACV30733.1| recombinase A [Ochrobactrum anthropi]
 gi|256809267|gb|ACV30734.1| recombinase A [Ochrobactrum anthropi]
 gi|256809269|gb|ACV30735.1| recombinase A [Ochrobactrum anthropi]
 gi|256809271|gb|ACV30736.1| recombinase A [Ochrobactrum anthropi]
 gi|256809273|gb|ACV30737.1| recombinase A [Ochrobactrum anthropi]
 gi|256809275|gb|ACV30738.1| recombinase A [Ochrobactrum anthropi]
 gi|256809277|gb|ACV30739.1| recombinase A [Ochrobactrum anthropi]
 gi|256809279|gb|ACV30740.1| recombinase A [Ochrobactrum anthropi]
 gi|256809281|gb|ACV30741.1| recombinase A [Ochrobactrum anthropi]
 gi|256809283|gb|ACV30742.1| recombinase A [Ochrobactrum anthropi]
 gi|256809285|gb|ACV30743.1| recombinase A [Ochrobactrum anthropi]
 gi|256809287|gb|ACV30744.1| recombinase A [Ochrobactrum anthropi ATCC 49188]
 gi|256809289|gb|ACV30745.1| recombinase A [Ochrobactrum anthropi]
 gi|256809291|gb|ACV30746.1| recombinase A [Ochrobactrum anthropi]
 gi|256809293|gb|ACV30747.1| recombinase A [Ochrobactrum anthropi]
 gi|256809295|gb|ACV30748.1| recombinase A [Ochrobactrum anthropi]
 gi|256809297|gb|ACV30749.1| recombinase A [Ochrobactrum anthropi]
 gi|256809299|gb|ACV30750.1| recombinase A [Ochrobactrum anthropi]
 gi|256809301|gb|ACV30751.1| recombinase A [Ochrobactrum anthropi]
 gi|256809303|gb|ACV30752.1| recombinase A [Ochrobactrum anthropi]
 gi|256809305|gb|ACV30753.1| recombinase A [Ochrobactrum anthropi]
 gi|256809307|gb|ACV30754.1| recombinase A [Ochrobactrum anthropi]
 gi|256809309|gb|ACV30755.1| recombinase A [Ochrobactrum anthropi]
 gi|256809311|gb|ACV30756.1| recombinase A [Ochrobactrum anthropi]
 gi|256809313|gb|ACV30757.1| recombinase A [Ochrobactrum anthropi]
 gi|256809315|gb|ACV30758.1| recombinase A [Ochrobactrum anthropi]
 gi|256809317|gb|ACV30759.1| recombinase A [Ochrobactrum anthropi]
 gi|256809319|gb|ACV30760.1| recombinase A [Ochrobactrum anthropi]
 gi|256809321|gb|ACV30761.1| recombinase A [Ochrobactrum anthropi]
 gi|256809323|gb|ACV30762.1| recombinase A [Ochrobactrum anthropi]
 gi|256809325|gb|ACV30763.1| recombinase A [Ochrobactrum anthropi]
 gi|256809327|gb|ACV30764.1| recombinase A [Ochrobactrum anthropi]
 gi|256809329|gb|ACV30765.1| recombinase A [Ochrobactrum anthropi]
 gi|256809331|gb|ACV30766.1| recombinase A [Ochrobactrum anthropi]
 gi|256809333|gb|ACV30767.1| recombinase A [Ochrobactrum anthropi]
 gi|256809335|gb|ACV30768.1| recombinase A [Ochrobactrum anthropi]
 gi|256809337|gb|ACV30769.1| recombinase A [Ochrobactrum anthropi]
 gi|256809339|gb|ACV30770.1| recombinase A [Ochrobactrum anthropi]
 gi|256809341|gb|ACV30771.1| recombinase A [Ochrobactrum anthropi]
 gi|256809343|gb|ACV30772.1| recombinase A [Ochrobactrum anthropi]
 gi|256809345|gb|ACV30773.1| recombinase A [Ochrobactrum anthropi]
 gi|256809347|gb|ACV30774.1| recombinase A [Ochrobactrum anthropi]
 gi|256809349|gb|ACV30775.1| recombinase A [Ochrobactrum anthropi]
 gi|256809351|gb|ACV30776.1| recombinase A [Ochrobactrum anthropi]
 gi|256809353|gb|ACV30777.1| recombinase A [Ochrobactrum anthropi]
 gi|256809355|gb|ACV30778.1| recombinase A [Ochrobactrum anthropi]
 gi|256809357|gb|ACV30779.1| recombinase A [Ochrobactrum anthropi]
 gi|256809359|gb|ACV30780.1| recombinase A [Ochrobactrum anthropi]
 gi|256809361|gb|ACV30781.1| recombinase A [Ochrobactrum anthropi]
 gi|256809363|gb|ACV30782.1| recombinase A [Ochrobactrum anthropi]
 gi|256809365|gb|ACV30783.1| recombinase A [Ochrobactrum anthropi]
 gi|256809367|gb|ACV30784.1| recombinase A [Ochrobactrum anthropi]
 gi|256809369|gb|ACV30785.1| recombinase A [Ochrobactrum anthropi]
 gi|256809371|gb|ACV30786.1| recombinase A [Ochrobactrum cytisi]
 gi|256809373|gb|ACV30787.1| recombinase A [Ochrobactrum lupini]
 gi|256809375|gb|ACV30788.1| recombinase A [Ochrobactrum anthropi]
 gi|256809377|gb|ACV30789.1| recombinase A [Ochrobactrum anthropi]
 gi|256809379|gb|ACV30790.1| recombinase A [Ochrobactrum anthropi]
 gi|256809381|gb|ACV30791.1| recombinase A [Ochrobactrum anthropi]
 gi|256809383|gb|ACV30792.1| recombinase A [Ochrobactrum anthropi]
 gi|256809385|gb|ACV30793.1| recombinase A [Ochrobactrum anthropi]
 gi|256809387|gb|ACV30794.1| recombinase A [Ochrobactrum anthropi]
 gi|256809389|gb|ACV30795.1| recombinase A [Ochrobactrum anthropi]
 gi|256809391|gb|ACV30796.1| recombinase A [Ochrobactrum anthropi]
 gi|256809393|gb|ACV30797.1| recombinase A [Ochrobactrum anthropi]
 gi|256809395|gb|ACV30798.1| recombinase A [Ochrobactrum anthropi]
 gi|256809397|gb|ACV30799.1| recombinase A [Ochrobactrum anthropi]
 gi|256809399|gb|ACV30800.1| recombinase A [Ochrobactrum anthropi]
          Length = 163

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 130/164 (79%), Positives = 149/164 (90%), Gaps = 1/164 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL+AALSQI+R +GKG+IM+LG    + E IE V +GSL LDIALG+GG PKGRIVEIY
Sbjct: 1   KALDAALSQIERAFGKGSIMRLGKNAPVIE-IETVPTGSLSLDIALGVGGLPKGRIVEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQA
Sbjct: 60  GPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           LEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QAR
Sbjct: 120 LEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQAR 163


>gi|254055223|gb|ACT64211.1| RecA [Pseudomonas chlororaphis]
 gi|254055225|gb|ACT64212.1| RecA [Pseudomonas chlororaphis]
 gi|254055227|gb|ACT64213.1| RecA [Pseudomonas chlororaphis]
 gi|254055229|gb|ACT64214.1| RecA [Pseudomonas chlororaphis]
 gi|254055231|gb|ACT64215.1| RecA [Pseudomonas chlororaphis]
 gi|254055233|gb|ACT64216.1| RecA [Pseudomonas sp. C1Phz26]
          Length = 186

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 133/188 (70%), Positives = 159/188 (84%), Gaps = 2/188 (1%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           +R +GKGA+M++G      + I  +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL
Sbjct: 1   ERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTL 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS
Sbjct: 59  TLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
            A+D+IVIDSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+
Sbjct: 119 NAIDVIVIDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQI 178

Query: 204 RMKIGVMF 211
           RMKIGVMF
Sbjct: 179 RMKIGVMF 186


>gi|68635354|emb|CAF21746.1| recombinase A [Lactobacillus amylophilus]
          Length = 200

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 134/200 (67%), Positives = 167/200 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  VS+GS+ LD A+G+GG+PKGRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   QISTVSTGSIALDTAIGVGGYPKGRIVEIYGPESSGKTTVALHAVAEVQKMGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+A+D  YA  LGV++ +LL+SQPDTGEQ LEI D LV SGAVDIIV+DSVAAL PRAEI
Sbjct: 61  ENAMDPAYAEALGVNIDDLLLSQPDTGEQGLEIADALVASGAVDIIVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EGDMG++  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PE T GG AL
Sbjct: 121 EGDMGDAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGVMFGNPEITPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS++RL++RR   IK+  
Sbjct: 181 KFYSTIRLEVRRAEQIKNGT 200


>gi|330684955|gb|EGG96633.1| RecA protein [Staphylococcus epidermidis VCU121]
          Length = 181

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 100/181 (55%), Positives = 134/181 (74%)

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           RLMSQALRKL+ +IS+S    +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR 
Sbjct: 1   RLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRA 60

Query: 237 GSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
             +K    I GN+T++KVVKNK+A PF+  E DIMYG+GIS  GELIDLGV+  IVDKSG
Sbjct: 61  EQLKQGQEIVGNRTKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENEIVDKSG 120

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           AW+S+ G+R+GQG+EN K +L+EN +I + I+  LR+  G+    + ++     K   D+
Sbjct: 121 AWYSYNGERMGQGKENVKTYLKENPQIKDEIDQKLREKLGIFDGDVEEKEEDAPKSLFDE 180

Query: 357 D 357
           +
Sbjct: 181 E 181


>gi|68637284|emb|CAF21785.1| recombinase A [Lactobacillus panis]
          Length = 200

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 131/200 (65%), Positives = 167/200 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  +SSGSL +D ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ Q+ GGT A++DA
Sbjct: 1   KIATISSGSLAIDKALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQRQGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+ALD  YA  LGVD+ NLL+SQPDTGE+ L I D L+ SGAVD++VIDSVAAL P+AEI
Sbjct: 61  ENALDPQYAEALGVDVDNLLLSQPDTGEEGLAIADALIASGAVDLVVIDSVAALVPQAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           +GDMG++  G+QARLMSQALRKL+  I+++K I +FINQ+R K+GVMFG+PETTTGG AL
Sbjct: 121 DGDMGDAHVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTTGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS++R++IRR   IK+  
Sbjct: 181 KFYSTIRMEIRRAEQIKNGT 200


>gi|160947836|gb|ABX54727.1| RecA protein [Rhizobium tropici]
          Length = 167

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 131/161 (81%), Positives = 148/161 (91%), Gaps = 1/161 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 8   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRI 66

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 67  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 126

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+S
Sbjct: 127 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDS 167


>gi|29652306|gb|AAO87814.1| RecA [Listeria monocytogenes]
          Length = 180

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 119/182 (65%), Positives = 150/182 (82%), Gaps = 2/182 (1%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           ++ AL QI++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGP
Sbjct: 1   IDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGP 58

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTT+ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALE
Sbjct: 59  ESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALE 118

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK 
Sbjct: 119 IAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKT 178

Query: 196 IL 197
           I 
Sbjct: 179 IA 180


>gi|68635387|emb|CAF21752.1| recombinase A [Lactobacillus casei]
          Length = 200

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 136/199 (68%), Positives = 167/199 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           + VVSSGSL +D ALG+GGFP+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   VSVVSSGSLAVDDALGVGGFPRGRIVEIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGV++  LL+SQPDTGEQ LEI D LV SGA+DI+VIDSVAAL PRAEIE
Sbjct: 62  NAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG++  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+G++FGSPETT GG ALK
Sbjct: 122 GDMGDAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKDKD 243
           FY++VRL+IRR   IK   
Sbjct: 182 FYATVRLEIRRSEQIKTGA 200


>gi|307343430|emb|CBJ18156.1| recombinase A [Micromonospora sp. SGA9]
          Length = 188

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 133/188 (70%), Positives = 161/188 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VE+YGPESSGKTT+ALH +A +Q+ GG  AF+DAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEVYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVRLDIRR 235
           SVRLD+RR
Sbjct: 181 SVRLDVRR 188


>gi|307343448|emb|CBJ18165.1| recombinase A [Micromonospora sp. SR15]
          Length = 187

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 135/187 (72%), Positives = 160/187 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDALLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVRLDIR 234
           SVRLD+R
Sbjct: 181 SVRLDVR 187


>gi|6694826|gb|AAF25411.1|AF214764_1 RecA protein [Arthrobacter sp. 'SMCC G963']
          Length = 203

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 140/203 (68%), Positives = 170/203 (83%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD
Sbjct: 1   LGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDAEHALDPEYAAKLGVD 60

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
              LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIEGDMG+S  G+QARL
Sbjct: 61  TDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQARL 120

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ +
Sbjct: 121 MSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQT 180

Query: 239 IKDKDSITGNQTRVKVVKNKMAS 261
           +K+     GN+T+ K+VKNKMA 
Sbjct: 181 LKEGADSVGNRTKAKIVKNKMAP 203


>gi|160947848|gb|ABX54733.1| RecA protein [Rhizobium leguminosarum]
          Length = 165

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 129/163 (79%), Positives = 148/163 (90%), Gaps = 1/163 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P
Sbjct: 4   EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLP 62

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 63  RGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 122

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
           QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG
Sbjct: 123 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMG 165


>gi|68637232|emb|CAF21774.1| recombinase A [Lactobacillus kefiranofaciens subsp. kefirgranum]
          Length = 200

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 125/198 (63%), Positives = 166/198 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  V +GSL LD A+G+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   QISTVPTGSLALDAAIGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGAVDI+V+DSVAAL PRAEI
Sbjct: 61  ENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAVDIVVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG AL
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKD 241
           KFYS++RL++RR   I +
Sbjct: 181 KFYSTIRLEVRRAEQINN 198


>gi|193795038|gb|ACF21655.1| RecA [Rhizobium tropici]
          Length = 165

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 134/165 (81%), Positives = 152/165 (92%), Gaps = 1/165 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKALEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI+EI
Sbjct: 1   SKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QAR
Sbjct: 120 ALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQAR 164


>gi|68637389|emb|CAF21810.1| recombinase A [Leuconostoc mesenteroides subsp. dextranicum]
 gi|68637394|emb|CAF21811.1| recombinase A [Leuconostoc mesenteroides subsp. mesenteroides]
 gi|68637399|emb|CAF21812.1| recombinase A [Leuconostoc mesenteroides subsp. cremoris]
          Length = 200

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 132/200 (66%), Positives = 165/200 (82%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE + SGS+ +D+ALG+GG+PKGRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   QIETIPSGSVKIDVALGVGGYPKGRIIEVYGPESSGKTTIALHAVAEVQKQGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+ALD  YA  LGV    LL+SQPDTGEQ LEI D LV+SGAVD+IV+DSVAAL PRAEI
Sbjct: 61  ENALDVKYAEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDMIVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL  +++R+  I +FINQ+R K+GVMFG+PETT GG AL
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS+VRL++RR   IKD  
Sbjct: 181 KFYSTVRLEVRRSTQIKDGT 200


>gi|261882239|gb|ACY05003.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  196 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 137/202 (67%), Positives = 172/202 (85%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQPDTGEQALEI + ++RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPDTGEQALEILETIIRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ ++K  +   GN+ +
Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202


>gi|261882297|gb|ACY05032.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  196 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 135/202 (66%), Positives = 168/202 (83%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKI    +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMTGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ ++K  +   GN+ +
Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202


>gi|118185924|gb|ABK76575.1| RecA [Bacillus vietnamensis]
          Length = 183

 Score =  196 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 119/185 (64%), Positives = 150/185 (81%), Gaps = 2/185 (1%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
            QI++ +GKG+IM+LG +      +    SGSL LD ALGIGG+P+GRI+E+YGPESSGK
Sbjct: 1   KQIEKQFGKGSIMKLGEKTD--RNVVTCPSGSLALDAALGIGGYPRGRIIEVYGPESSGK 58

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TT+ALH IA+ Q  GG  AF+DAEHALD  YA+KLGV++  LL+SQPDTGEQALEI + L
Sbjct: 59  TTVALHAIAEVQAQGGQAAFIDAEHALDPEYAQKLGVNIDELLLSQPDTGEQALEIAEAL 118

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGAVD IV+DSVAAL P+AEIEG+MG++  G+QARLMSQALRKL+ +I++SK I +FI
Sbjct: 119 VRSGAVDAIVVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLSGAINKSKTIAIFI 178

Query: 201 NQMRM 205
           NQ+R 
Sbjct: 179 NQIRR 183


>gi|46203425|ref|ZP_00051550.2| COG0468: RecA/RadA recombinase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 180

 Score =  196 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 124/181 (68%), Positives = 150/181 (82%), Gaps = 1/181 (0%)

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQ+LRKLT SIS S C+++FINQ+RMKIG+M+GSPETTTG  ALKFY+SVRLDIRRV +
Sbjct: 1   MSQSLRKLTGSISLSYCMVIFINQIRMKIGLMYGSPETTTGAYALKFYASVRLDIRRVST 60

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IKD+D   GN  RVKVVKNK+A PFKQVEFDIM+GEG+S  GEL+DLGVKA IV+KSGAW
Sbjct: 61  IKDRDEAIGNNVRVKVVKNKVAPPFKQVEFDIMFGEGVSKVGELVDLGVKAGIVEKSGAW 120

Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           FS+  QRLGQGREN+K FLR+N +IA  IE+ +RQN+GLVAD +L E A  T +D D+ +
Sbjct: 121 FSYDSQRLGQGRENAKGFLRDNPDIAAKIEASIRQNSGLVADRIL-ENAKPTAEDLDEGE 179

Query: 359 T 359
            
Sbjct: 180 A 180


>gi|261882285|gb|ACY05026.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  196 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 138/202 (68%), Positives = 171/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTQNLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ S+K  +   GN+ +
Sbjct: 181 RIDIRRIASLKQNEQHIGNRAK 202


>gi|148990151|ref|ZP_01821391.1| recombinase A [Streptococcus pneumoniae SP6-BS73]
 gi|147924545|gb|EDK75633.1| recombinase A [Streptococcus pneumoniae SP6-BS73]
          Length = 209

 Score =  196 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 117/191 (61%), Positives = 153/191 (80%), Gaps = 2/191 (1%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            ++ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG GG+PKGRI
Sbjct: 17  AEREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRI 74

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEHALD  YA  LGV++  LL+SQPD+
Sbjct: 75  IEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDS 134

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G+QAR+MSQA+RKL +S
Sbjct: 135 GEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGAS 194

Query: 190 ISRSKCILVFI 200
           I+++K I  F 
Sbjct: 195 INKTKTIAYFY 205


>gi|261882251|gb|ACY05009.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  196 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 135/202 (66%), Positives = 168/202 (83%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFFDAEHALDVH 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +N L+SQPDTGEQALEI + + RSG +D++V+DSVAAL P+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENFLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALPPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ ++K  +   GN+ +
Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202


>gi|261882257|gb|ACY05012.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  196 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 137/202 (67%), Positives = 170/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAAL P+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALPPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ S+K  +   GN+ +
Sbjct: 181 RIDIRRIASLKQNEQHIGNRAK 202


>gi|269101878|ref|ZP_06154575.1| RecA protein [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268161776|gb|EEZ40272.1| RecA protein [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 187

 Score =  196 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 107/190 (56%), Positives = 145/190 (76%), Gaps = 7/190 (3%)

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
           MQAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDI
Sbjct: 1   MQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDI 60

Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVD 293
           RR GSIKD + + GN+TR+KVVKNK+A+PFKQ E  I+YG+G +  G+LIDLGVK  +++
Sbjct: 61  RRTGSIKDGEEVVGNETRIKVVKNKIAAPFKQAETQILYGQGFNRVGKLIDLGVKQKLIE 120

Query: 294 KSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353
           K+GAW+S+KG ++GQG+ N+  +L EN  IA+ IE  +R+        LL  P  +T +D
Sbjct: 121 KAGAWYSYKGDKIGQGKANAGKYLTENPAIADEIEKQIRE-------LLLTPPQEDTTED 173

Query: 354 ADKDDTDNVE 363
           A  D  +  E
Sbjct: 174 ASLDAIEAGE 183


>gi|193795051|gb|ACF21659.1| RecA [Rhizobium tropici]
 gi|193795061|gb|ACF21662.1| RecA [Rhizobium tropici]
          Length = 165

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 133/165 (80%), Positives = 152/165 (92%), Gaps = 1/165 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKALEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI+EI
Sbjct: 1   SKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QAR
Sbjct: 120 ALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQAR 164


>gi|261882303|gb|ACY05035.1| recombinase A [Helicobacter pylori]
 gi|261882323|gb|ACY05045.1| recombinase A [Helicobacter pylori]
 gi|261882383|gb|ACY05075.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 137/202 (67%), Positives = 171/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ ++K  +   GN+ +
Sbjct: 181 RIDIRRIATLKQNEQHIGNRAK 202


>gi|261882265|gb|ACY05016.1| recombinase A [Helicobacter pylori]
 gi|261882271|gb|ACY05019.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 137/202 (67%), Positives = 171/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTQNLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ ++K  +   GN+ +
Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202


>gi|110003023|emb|CAJ57798.1| recombinase A [Bradyrhizobium elkanii]
          Length = 166

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 133/166 (80%), Positives = 152/166 (91%), Gaps = 1/166 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG+   + E I+ VS+GSL LDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERNFGKGSIMKLGANEKVVE-IDTVSTGSLSLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           QALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPGMQAR
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGMQAR 165


>gi|68635329|emb|CAF21740.1| recombinase A [Lactobacillus acetotolerans]
          Length = 197

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 129/197 (65%), Positives = 166/197 (84%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  V SGSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   KISTVPSGSLALDAALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQKHGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+A+D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGAVDI+V+DSVAAL P+AEI
Sbjct: 61  ENAMDPAYAEALGVDVDSLILSQPNTGEEGLQIADTLISSGAVDIVVVDSVAALVPQAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           +G+MG++  G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG AL
Sbjct: 121 DGEMGDTHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIK 240
           KFYS++RL+IRR   IK
Sbjct: 181 KFYSTIRLEIRRAEKIK 197


>gi|261882259|gb|ACY05013.1| recombinase A [Helicobacter pylori]
 gi|261882263|gb|ACY05015.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 138/202 (68%), Positives = 171/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ S+K  +   GN+ +
Sbjct: 181 RIDIRRIASLKQNEQHIGNRAK 202


>gi|193795046|gb|ACF21657.1| RecA [Sinorhizobium sp. 72]
 gi|193795053|gb|ACF21660.1| RecA [Sinorhizobium sp. 206]
          Length = 165

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 136/165 (82%), Positives = 152/165 (92%), Gaps = 1/165 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKALEAALSQI+R +GKG+IM+LGS  +I E IE VS+GSL LDIALGIGG PKGRIVEI
Sbjct: 1   SKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QAR
Sbjct: 120 ALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQAR 164


>gi|325650826|emb|CBY89596.1| RecA protein [Rhizobium leguminosarum]
          Length = 173

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 136/174 (78%), Positives = 160/174 (91%), Gaps = 1/174 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTT
Sbjct: 1   IERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVR
Sbjct: 60  LALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           SGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S  +
Sbjct: 120 SGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNTM 173


>gi|89143229|emb|CAJ57509.1| recombinase A [Microbacterium aerolatum]
          Length = 204

 Score =  195 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 142/204 (69%), Positives = 168/204 (82%)

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
           H IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DMLVRSGA
Sbjct: 1   HAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIADMLVRSGA 60

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  ++++   ++FINQ+R 
Sbjct: 61  IDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLRE 120

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGV FGSPETT GG ALKFY+SVR+DIRR+ ++KD     GN+TRVKVVKNKMA PFKQ
Sbjct: 121 KIGVFFGSPETTAGGKALKFYASVRMDIRRIETLKDGTDAVGNRTRVKVVKNKMAPPFKQ 180

Query: 266 VEFDIMYGEGISFFGELIDLGVKA 289
            EFDI+YG GIS  G LID GV+ 
Sbjct: 181 AEFDILYGVGISREGSLIDFGVEH 204


>gi|307343428|emb|CBJ18155.1| recombinase A [Micromonospora sp. SGA5]
          Length = 187

 Score =  195 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 134/187 (71%), Positives = 161/187 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   LL+SQPDTGEQALEITDMLVRSGA+DI+VIDSVAAL PRAEIEG+M
Sbjct: 61  DPDYAKALGVDTDALLVSQPDTGEQALEITDMLVRSGAIDIVVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVRLDIR 234
           SVRLD+R
Sbjct: 181 SVRLDVR 187


>gi|160375117|gb|ABX38943.1| recombinase protein A [Mesorhizobium caraganae]
          Length = 160

 Score =  195 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 123/156 (78%), Positives = 142/156 (91%), Gaps = 1/156 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 6   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 64

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 65  VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 124

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG
Sbjct: 125 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEG 160


>gi|189016820|gb|ACD70377.1| recombinase protein A [Mesorhizobium sp. CCBAU 01477]
          Length = 160

 Score =  195 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 124/160 (77%), Positives = 143/160 (89%), Gaps = 1/160 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P
Sbjct: 2   EDKSVDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLP 60

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 61  RGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 120

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           QPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG
Sbjct: 121 QPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEG 160


>gi|261882237|gb|ACY05002.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  195 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 139/202 (68%), Positives = 171/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    LVFINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ S+K  +   GN+ +
Sbjct: 181 RIDIRRIASLKQNEQHIGNRAK 202


>gi|68637368|emb|CAF21806.1| recombinase A [Lactobacillus vitulinus]
          Length = 200

 Score =  195 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 128/197 (64%), Positives = 166/197 (84%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            ++V+ SGSL LD+ALGIGG+PKGRI+EIYGPESSGKTTL LH IA+ QK GG  AF+DA
Sbjct: 1   DVDVIPSGSLTLDLALGIGGYPKGRIIEIYGPESSGKTTLTLHAIAECQKQGGKAAFIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHA+D +YA+ LGVD+  L++SQPD+GEQ LEI +MLVRSG +D++V+DSVAAL P+ E+
Sbjct: 61  EHAIDPVYAKNLGVDVDELILSQPDSGEQGLEIAEMLVRSGVIDLVVVDSVAALVPQVEL 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           +G+M +   G+QARLMS+ALRKL+  ++++ C ++FINQ+R KIGVMFG+PETTTGG AL
Sbjct: 121 DGEMSDQNMGLQARLMSKALRKLSGIMNKTSCTVIFINQLREKIGVMFGNPETTTGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIK 240
           KFYSSVR++IRR   IK
Sbjct: 181 KFYSSVRIEIRRSEQIK 197


>gi|261882231|gb|ACY04999.1| recombinase A [Helicobacter pylori]
 gi|261882235|gb|ACY05001.1| recombinase A [Helicobacter pylori]
 gi|261882247|gb|ACY05007.1| recombinase A [Helicobacter pylori]
 gi|261882267|gb|ACY05017.1| recombinase A [Helicobacter pylori]
 gi|261882269|gb|ACY05018.1| recombinase A [Helicobacter pylori]
 gi|261882275|gb|ACY05021.1| recombinase A [Helicobacter pylori]
 gi|261882287|gb|ACY05027.1| recombinase A [Helicobacter pylori]
 gi|261882291|gb|ACY05029.1| recombinase A [Helicobacter pylori]
 gi|261882301|gb|ACY05034.1| recombinase A [Helicobacter pylori]
 gi|261882305|gb|ACY05036.1| recombinase A [Helicobacter pylori]
 gi|261882307|gb|ACY05037.1| recombinase A [Helicobacter pylori]
 gi|261882309|gb|ACY05038.1| recombinase A [Helicobacter pylori]
 gi|261882311|gb|ACY05039.1| recombinase A [Helicobacter pylori]
 gi|261882313|gb|ACY05040.1| recombinase A [Helicobacter pylori]
 gi|261882315|gb|ACY05041.1| recombinase A [Helicobacter pylori]
 gi|261882317|gb|ACY05042.1| recombinase A [Helicobacter pylori]
 gi|261882319|gb|ACY05043.1| recombinase A [Helicobacter pylori]
 gi|261882325|gb|ACY05046.1| recombinase A [Helicobacter pylori]
 gi|261882327|gb|ACY05047.1| recombinase A [Helicobacter pylori]
 gi|261882329|gb|ACY05048.1| recombinase A [Helicobacter pylori]
 gi|261882331|gb|ACY05049.1| recombinase A [Helicobacter pylori]
 gi|261882333|gb|ACY05050.1| recombinase A [Helicobacter pylori]
 gi|261882337|gb|ACY05052.1| recombinase A [Helicobacter pylori]
 gi|261882339|gb|ACY05053.1| recombinase A [Helicobacter pylori]
 gi|261882341|gb|ACY05054.1| recombinase A [Helicobacter pylori]
 gi|261882343|gb|ACY05055.1| recombinase A [Helicobacter pylori]
 gi|261882345|gb|ACY05056.1| recombinase A [Helicobacter pylori]
 gi|261882347|gb|ACY05057.1| recombinase A [Helicobacter pylori]
 gi|261882351|gb|ACY05059.1| recombinase A [Helicobacter pylori]
 gi|261882353|gb|ACY05060.1| recombinase A [Helicobacter pylori]
 gi|261882355|gb|ACY05061.1| recombinase A [Helicobacter pylori]
 gi|261882357|gb|ACY05062.1| recombinase A [Helicobacter pylori]
 gi|261882361|gb|ACY05064.1| recombinase A [Helicobacter pylori]
 gi|261882363|gb|ACY05065.1| recombinase A [Helicobacter pylori]
 gi|261882365|gb|ACY05066.1| recombinase A [Helicobacter pylori]
 gi|261882371|gb|ACY05069.1| recombinase A [Helicobacter pylori]
 gi|261882373|gb|ACY05070.1| recombinase A [Helicobacter pylori]
 gi|261882375|gb|ACY05071.1| recombinase A [Helicobacter pylori]
 gi|261882377|gb|ACY05072.1| recombinase A [Helicobacter pylori]
 gi|261882379|gb|ACY05073.1| recombinase A [Helicobacter pylori]
 gi|261882381|gb|ACY05074.1| recombinase A [Helicobacter pylori]
 gi|261882385|gb|ACY05076.1| recombinase A [Helicobacter pylori]
 gi|261882387|gb|ACY05077.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  195 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 137/202 (67%), Positives = 171/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ ++K  +   GN+ +
Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202


>gi|325651187|emb|CBY89415.1| RecA protein [Mesorhizobium sp. R-45888]
          Length = 172

 Score =  195 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 135/173 (78%), Positives = 158/173 (91%), Gaps = 1/173 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+
Sbjct: 1   KGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTV 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D+
Sbjct: 60  AEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           +V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS  +++FIN
Sbjct: 120 LVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFIN 172


>gi|89143247|emb|CAJ57518.1| recombinase A [Microbacterium hominis]
          Length = 206

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 141/206 (68%), Positives = 169/206 (82%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA  Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DMLVRSGA+D
Sbjct: 1   IANVQRAGGIAAFIDAEHALDPDYAQKLGVDIDQLLVSQPDTGEQALEIADMLVRSGAID 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  ++++   ++FINQ+R KI
Sbjct: 61  LVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLREKI 120

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA PFKQ E
Sbjct: 121 GVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKMAPPFKQAE 180

Query: 268 FDIMYGEGISFFGELIDLGVKASIVD 293
           FDI+YG GIS  G LID GV+ ++V 
Sbjct: 181 FDILYGIGISREGSLIDFGVEHALVK 206


>gi|189016836|gb|ACD70385.1| recombinase protein A [Mesorhizobium sp. CCBAU 65328]
          Length = 157

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 123/156 (78%), Positives = 142/156 (91%), Gaps = 1/156 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 3   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 61

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 62  VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG
Sbjct: 122 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEG 157


>gi|307343400|emb|CBJ18141.1| recombinase A [Micromonospora sp. GUI43]
          Length = 190

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 136/190 (71%), Positives = 162/190 (85%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD
Sbjct: 1   PTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
             YA+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG
Sbjct: 61  PEYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+S
Sbjct: 121 DSHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYAS 180

Query: 229 VRLDIRRVGS 238
           VRLD+RR+ S
Sbjct: 181 VRLDVRRIES 190


>gi|68637358|emb|CAF21804.1| recombinase A [Lactobacillus vaginalis]
          Length = 200

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 130/200 (65%), Positives = 167/200 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  VSSGSL +D ALG+GG+P+GRIVEIYGPESSGKTT+AL  +A+ Q+ GGT A++DA
Sbjct: 1   KIATVSSGSLAIDKALGVGGYPRGRIVEIYGPESSGKTTVALQAVAEVQRQGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+ALD  YA  LGV++ +LL+SQPDTGE+ LEI D L+ SGAVD++V+DSVAAL PRAEI
Sbjct: 61  ENALDPQYAEALGVNVDDLLLSQPDTGEEGLEIADALISSGAVDLVVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL+  I+++K I +FINQ+R K+GVMFG+PETTTGG AL
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTTGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS++R++IRR   IK+  
Sbjct: 181 KFYSTIRMEIRRSEQIKNGT 200


>gi|68637279|emb|CAF21784.1| recombinase A [Lactobacillus oris]
          Length = 200

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 129/200 (64%), Positives = 165/200 (82%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  VSSGSL +D ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ Q+ GGT A++DA
Sbjct: 1   KIATVSSGSLAIDKALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQRQGGTVAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+ALD  YA  LGVD+ NLL+SQPDTGE+ L I D L+ + A+D++VIDSVAAL P+AEI
Sbjct: 61  ENALDPQYAEALGVDVDNLLLSQPDTGEEGLAIADALIATSAIDLVVIDSVAALVPQAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           +GDMG+   G+QARLMSQALRKL+  I+++K I +FINQ+R K+GVMFG+PETTTGG AL
Sbjct: 121 DGDMGDHHVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTTGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS++R++IRR   IK+  
Sbjct: 181 KFYSTIRMEIRRAEQIKNGT 200


>gi|325512777|gb|ADZ23577.1| RecA [Bradyrhizobium sp. CCBAU 25437]
          Length = 180

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 135/181 (74%), Positives = 161/181 (88%), Gaps = 1/181 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG        IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 120 DVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 179

Query: 207 I 207
           I
Sbjct: 180 I 180


>gi|68635400|emb|CAF21755.1| recombinase A [Lactobacillus coleohominis]
          Length = 200

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 133/200 (66%), Positives = 167/200 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  VSSGSL +D ALGIGG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   KIASVSSGSLAIDDALGIGGYPRGRIIEMYGPESSGKTTVALHAVAEVQKQGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+ALD  YA  LGVD+ NLL+SQPDTGEQ LEI D L+ SGAVDI+V+DSVAAL PRAEI
Sbjct: 61  ENALDPQYAEALGVDIDNLLLSQPDTGEQGLEIADALIASGAVDIVVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL+  I+++K I +FINQ+R K+GVMFG+PETT GG AL
Sbjct: 121 EGEMGDTHVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS++R++IRR   +K+  
Sbjct: 181 KFYSTIRMEIRRGEQLKEGK 200


>gi|189016818|gb|ACD70376.1| recombinase protein A [Mesorhizobium sp. CCBAU 01461]
          Length = 159

 Score =  195 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 123/156 (78%), Positives = 142/156 (91%), Gaps = 1/156 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 5   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 64  VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG
Sbjct: 124 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEG 159


>gi|261882229|gb|ACY04998.1| recombinase A [Helicobacter pylori]
 gi|261882249|gb|ACY05008.1| recombinase A [Helicobacter pylori]
 gi|261882281|gb|ACY05024.1| recombinase A [Helicobacter pylori]
 gi|261882295|gb|ACY05031.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  195 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 133/202 (65%), Positives = 167/202 (82%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVY 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKI    +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMTGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ ++K  +   GN+ +
Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202


>gi|159149118|gb|ABW91115.1| RecA [Rhodobaca bogoriensis]
          Length = 183

 Score =  195 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 135/184 (73%), Positives = 161/184 (87%), Gaps = 1/184 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG    + E IE +S+GSLGLDIALGIGG PKGR++EIYGPESSGKTTL LH
Sbjct: 1   FGKGSMMKLGGDNPVAE-IEAISTGSLGLDIALGIGGLPKGRVIEIYGPESSGKTTLTLH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            +A++QK GG CAFVDAEHALD  YARKLGVDL  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  AVAEAQKKGGVCAFVDAEHALDPQYARKLGVDLDELLISQPDTGEQALEIVDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++V+DSVAALTP++E+EGDMG+S  G+ ARLMSQA+RKLTSSI+RS C+++FINQ+RMK
Sbjct: 120 GLVVVDSVAALTPKSELEGDMGDSSVGVHARLMSQAMRKLTSSIARSNCMVIFINQIRMK 179

Query: 207 IGVM 210
           IGVM
Sbjct: 180 IGVM 183


>gi|115361702|gb|ABF67683.1| RecA [Pectobacterium atrosepticum]
          Length = 194

 Score =  195 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 141/194 (72%), Positives = 167/194 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD
Sbjct: 1   SLGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G
Sbjct: 61  PIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+S
Sbjct: 121 DSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180

Query: 229 VRLDIRRVGSIKDK 242
           VRLDIRR G+IK+ 
Sbjct: 181 VRLDIRRTGAIKEG 194


>gi|115498193|gb|ABI98676.1| RecA [Bradyrhizobium sp. CCBAU 65199]
          Length = 183

 Score =  195 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 135/184 (73%), Positives = 164/184 (89%), Gaps = 1/184 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 179

Query: 207 IGVM 210
           IGVM
Sbjct: 180 IGVM 183


>gi|254055249|gb|ACT64224.1| RecA [Brevibacterium iodinum]
          Length = 186

 Score =  195 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 126/188 (67%), Positives = 154/188 (81%), Gaps = 2/188 (1%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
            R YGKGAIM+LG    + E I  + +GS+ LDIALGIGG P+GR+VEIYGPESSGKTT+
Sbjct: 1   DRNYGKGAIMRLGD--GVREPIASIPTGSVALDIALGIGGLPRGRVVEIYGPESSGKTTV 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALH +A +QK GG   F+DAEHALD  YA+KLGVD   LL+SQPDTGEQALEI DML+RS
Sbjct: 59  ALHAVANAQKAGGIAGFIDAEHALDPEYAKKLGVDTDQLLVSQPDTGEQALEIADMLIRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GA+D+IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T ++++SK   +FINQ+
Sbjct: 119 GALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGALAQSKTTAIFINQL 178

Query: 204 RMKIGVMF 211
           R K+GV F
Sbjct: 179 REKVGVFF 186


>gi|189016822|gb|ACD70378.1| recombinase protein A [Mesorhizobium sp. CCBAU 03254]
          Length = 158

 Score =  195 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 123/156 (78%), Positives = 142/156 (91%), Gaps = 1/156 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 4   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 63  VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG
Sbjct: 123 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEG 158


>gi|68635395|emb|CAF21754.1| recombinase A [Lactobacillus catenaformis]
          Length = 200

 Score =  195 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 130/200 (65%), Positives = 167/200 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            ++V+ SGSL LD ALGIGG+PKGRI+EIYGPESSGKTTL LH IA+ QK GG  AFVDA
Sbjct: 1   DVDVIPSGSLTLDAALGIGGYPKGRIIEIYGPESSGKTTLTLHAIAECQKQGGKAAFVDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHA+D +YA+ LGV++  L++SQPD+GEQALEI +MLVRSG +D+IVIDSVAAL P+ E+
Sbjct: 61  EHAIDPVYAKNLGVNIDELILSQPDSGEQALEIAEMLVRSGVIDLIVIDSVAALVPQVEL 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           +G+M +   G+QARLMS+ALRKL+  ++++ C ++FINQ+R KIG+MFG+PETTTGG AL
Sbjct: 121 DGEMSDQNMGLQARLMSKALRKLSGVMNKTNCTVIFINQLREKIGIMFGNPETTTGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYSSVR++IRR   IK+  
Sbjct: 181 KFYSSVRIEIRRSEQIKNGS 200


>gi|261882273|gb|ACY05020.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  195 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 132/202 (65%), Positives = 166/202 (82%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHVIAECQKNGGVCAFIDAEHALDVY 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LG D +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGGDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKI    +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMTGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ ++K  +   GN+ +
Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202


>gi|189016816|gb|ACD70375.1| recombinase protein A [Mesorhizobium sp. CCBAU 01409]
          Length = 159

 Score =  195 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 124/160 (77%), Positives = 143/160 (89%), Gaps = 1/160 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P
Sbjct: 1   EDKSVDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLP 59

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 60  RGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 119

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           QPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG
Sbjct: 120 QPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEG 159


>gi|307343436|emb|CBJ18159.1| recombinase A [Micromonospora sp. SGA21]
          Length = 190

 Score =  195 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 134/190 (70%), Positives = 163/190 (85%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD 
Sbjct: 1   TGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVASAQRAGGIAAFIDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
            YA+ LGVD   +L+SQPDTGEQALEI DML+RSGA+D+IVIDSVAAL PRAEIEG+MG+
Sbjct: 61  EYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGAIDVIVIDSVAALVPRAEIEGEMGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           S  G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SV
Sbjct: 121 SHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASV 180

Query: 230 RLDIRRVGSI 239
           RLD+RR+ S+
Sbjct: 181 RLDVRRIESL 190


>gi|229458630|gb|ACQ65973.1| recombinase A [Bradyrhizobium liaoningense]
 gi|229458636|gb|ACQ65976.1| recombinase A [Bradyrhizobium sp. SEMIA 6014]
 gi|229458663|gb|ACQ65989.1| recombinase A [Bradyrhizobium sp. SEMIA 6163]
 gi|229458669|gb|ACQ65992.1| recombinase A [Bradyrhizobium sp. SEMIA 6186]
 gi|229458674|gb|ACQ65994.1| recombinase A [Bradyrhizobium yuanmingense]
          Length = 175

 Score =  195 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 132/176 (75%), Positives = 156/176 (88%), Gaps = 1/176 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
            AALSQI+R +GKG++M+LG        IE VSSGSLGLDIALGIGG PKGRIVEIYGPE
Sbjct: 1   AAALSQIERQFGKGSVMKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
            D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++
Sbjct: 120 CDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175


>gi|110003007|emb|CAJ57790.1| recombinase A [Sinorhizobium fredii]
          Length = 166

 Score =  195 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 137/166 (82%), Positives = 153/166 (92%), Gaps = 1/166 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQAR
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQAR 165


>gi|110002999|emb|CAJ57786.1| recombinase A [Sinorhizobium kostiense]
          Length = 166

 Score =  195 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 135/166 (81%), Positives = 153/166 (92%), Gaps = 1/166 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERAFGKGSIMKLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG++LPGMQAR
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDNLPGMQAR 165


>gi|325651191|emb|CBY89417.1| RecA protein [Mesorhizobium sp. R-45568]
          Length = 171

 Score =  195 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 133/172 (77%), Positives = 156/172 (90%), Gaps = 1/172 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           +R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTL
Sbjct: 1   ERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRS
Sbjct: 60  ALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           GA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS  
Sbjct: 120 GAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNT 171


>gi|261882243|gb|ACY05005.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  195 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 134/202 (66%), Positives = 167/202 (82%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVY 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    LVFINQ+RMKI    +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMTGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ ++K  +   GN+ +
Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202


>gi|229458610|gb|ACQ65963.1| recombinase A [Bradyrhizobium elkanii]
 gi|229458618|gb|ACQ65967.1| recombinase A [Bradyrhizobium elkanii]
 gi|229458620|gb|ACQ65968.1| recombinase A [Bradyrhizobium elkanii]
 gi|229458624|gb|ACQ65970.1| recombinase A [Bradyrhizobium elkanii]
 gi|229458626|gb|ACQ65971.1| recombinase A [Bradyrhizobium elkanii]
 gi|229458638|gb|ACQ65977.1| recombinase A [Bradyrhizobium sp. SEMIA 6028]
 gi|229458640|gb|ACQ65978.1| recombinase A [Bradyrhizobium sp. SEMIA 6053]
 gi|229458652|gb|ACQ65984.1| recombinase A [Bradyrhizobium sp. SEMIA 6101]
          Length = 175

 Score =  195 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 129/175 (73%), Positives = 155/175 (88%), Gaps = 1/175 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG        +E VSSGSLGLDIALG+GG PKGR+VEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRVVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++
Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175


>gi|160947814|gb|ABX54716.1| RecA protein [Ensifer adhaerens]
          Length = 169

 Score =  195 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 135/167 (80%), Positives = 150/167 (89%), Gaps = 1/167 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LG + SI E IE VS+GSL LDIALGIGG P
Sbjct: 4   EDKSVDKSKALEAALSQIERSFGKGSIMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLP 62

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 63  KGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 122

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           QPDTGEQALEITD LVRSGA+D++VIDSVAAL PRAEIEG+MG+SLP
Sbjct: 123 QPDTGEQALEITDTLVRSGAIDVLVIDSVAALVPRAEIEGEMGDSLP 169


>gi|23194261|gb|AAN15078.1| RecA protein [Vibrio cholerae]
          Length = 212

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 144/212 (67%), Positives = 181/212 (85%)

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D 
Sbjct: 1   KTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDA 60

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +F
Sbjct: 61  LARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIF 120

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           INQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+
Sbjct: 121 INQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKI 180

Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASI 291
           A+PFK+    IMYG+G +  GELIDLGVK  +
Sbjct: 181 AAPFKEANTQIMYGQGFNREGELIDLGVKHKM 212


>gi|110002971|emb|CAJ57772.1| recombinase A [Sinorhizobium arboris]
 gi|110002975|emb|CAJ57774.1| recombinase A [Sinorhizobium arboris]
          Length = 166

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 134/166 (80%), Positives = 153/166 (92%), Gaps = 1/166 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQAR
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQAR 165


>gi|68637440|emb|CAF21820.1| recombinase A [Pediococcus dextrinicus]
          Length = 192

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 129/192 (67%), Positives = 165/192 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE VS+GSL LD ALG+GG+P+GRIVE+YGPESSGKTT+ALH +A+ Q+ GGT A++DA
Sbjct: 1   QIETVSTGSLALDNALGVGGYPRGRIVEVYGPESSGKTTVALHAVAEVQRNGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+A+D  YA  LGV++ +LL+SQPDTGEQ LEI D LV SGAVDIIV+DSVAAL PRAEI
Sbjct: 61  ENAMDPAYATALGVNIDDLLLSQPDTGEQGLEIADALVTSGAVDIIVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL+  I+++K I +FINQ+R K+G+MFG+PETT GG AL
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLSGKINKTKTIAIFINQIREKVGIMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRR 235
           KFY+++RL++RR
Sbjct: 181 KFYATIRLEVRR 192


>gi|261882289|gb|ACY05028.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 133/202 (65%), Positives = 168/202 (83%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVY 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKI  + +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ ++K  +   GN+ +
Sbjct: 181 RIDIRRIATLKQNEQHIGNRAK 202


>gi|229458612|gb|ACQ65964.1| recombinase A [Bradyrhizobium sp. SEMIA 656]
 gi|229458672|gb|ACQ65993.1| recombinase A [Bradyrhizobium sp. SEMIA 6192]
 gi|229458676|gb|ACQ65995.1| recombinase A [Bradyrhizobium sp. SEMIA 6374]
          Length = 175

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 132/176 (75%), Positives = 157/176 (89%), Gaps = 1/176 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
            AALSQI+R +GKG++M+LG +      IE VSSGSLGLDIALGIGG PKGRIVEIYGPE
Sbjct: 1   AAALSQIERQFGKGSVMKLG-KSDRSMDIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
            D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++
Sbjct: 120 CDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175


>gi|261882283|gb|ACY05025.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 136/202 (67%), Positives = 170/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVY 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ S+K  +   GN+ +
Sbjct: 181 RIDIRRIASLKQNEQHIGNRAK 202


>gi|229458678|gb|ACQ65996.1| recombinase A [Bradyrhizobium sp. SEMIA 6434]
          Length = 175

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 135/176 (76%), Positives = 158/176 (89%), Gaps = 1/176 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
            AALSQI+R +GKG++M+LG +      IE VSSGSLGLDIALGIGG PKGRIVEIYGPE
Sbjct: 1   AAALSQIERQFGKGSVMKLG-KSDRSMDIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ +LLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDDLLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
            D LVRSGAVD++VIDSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++
Sbjct: 120 CDTLVRSGAVDVMVIDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINK 175


>gi|189016832|gb|ACD70383.1| recombinase protein A [Mesorhizobium sp. CCBAU 65318]
          Length = 159

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 122/157 (77%), Positives = 143/157 (91%), Gaps = 1/157 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 4   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 63  IEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+
Sbjct: 123 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGE 159


>gi|189016828|gb|ACD70381.1| recombinase protein A [Mesorhizobium sp. CCBAU 03299]
          Length = 158

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 122/158 (77%), Positives = 141/158 (89%), Gaps = 1/158 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P
Sbjct: 2   EDKSVDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLP 60

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 61  RGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 120

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           QPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEI
Sbjct: 121 QPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEI 158


>gi|68637325|emb|CAF21796.1| recombinase A [Lactobacillus rhamnosus]
          Length = 200

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 127/199 (63%), Positives = 164/199 (82%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +  VSSGSL +D ALG+GG P+GRIVEIYGPESSGKTT+ALH +A  Q+ GGT A++DAE
Sbjct: 2   VSAVSSGSLAIDDALGVGGLPRGRIVEIYGPESSGKTTVALHAVAMVQQHGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGV++  LL+SQPDTGEQ LEI D LV SGA+DI+V+DSVAAL PRAEIE
Sbjct: 62  NAMDPKYAAALGVNIDELLLSQPDTGEQGLEIADELVASGAIDILVVDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG++  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+G++FG+PE T GG ALK
Sbjct: 122 GDMGDAHVGLQARLMSQALRKLSGAINKTKTIALFINQIREKVGIVFGNPEITPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKDKD 243
           FY++VR+++RR   IK+  
Sbjct: 182 FYATVRMEVRRSEQIKNGA 200


>gi|189016814|gb|ACD70374.1| recombinase protein A [Mesorhizobium sp. CCBAU 01405]
          Length = 160

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 124/161 (77%), Positives = 144/161 (89%), Gaps = 1/161 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P
Sbjct: 1   EDKSVDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLP 59

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 60  RGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 119

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           QPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+
Sbjct: 120 QPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGE 160


>gi|261882253|gb|ACY05010.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 136/202 (67%), Positives = 170/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG C F+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCTFIDAEHALDVH 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ ++K  +   GN+ +
Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202


>gi|189016840|gb|ACD70387.1| recombinase protein A [Bradyrhizobium sp. CCBAU 03282]
          Length = 159

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 123/157 (78%), Positives = 143/157 (91%), Gaps = 1/157 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 4   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 63  VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+
Sbjct: 123 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGE 159


>gi|217037925|gb|ACJ76432.1| RecA [Bradyrhizobium sp. STM 3571]
          Length = 171

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 131/172 (76%), Positives = 152/172 (88%), Gaps = 1/172 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AALSQI+R +GKG++M+LG        IE VSSGSLGLDIALGIGG PKGRIVEIYG
Sbjct: 1   ALAAALSQIERQFGKGSVMKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           EI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKL
Sbjct: 120 EICDTLVRSGAVDVMVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKL 171


>gi|110002959|emb|CAJ57766.1| recombinase A [Rhizobium giardinii]
          Length = 166

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 137/166 (82%), Positives = 153/166 (92%), Gaps = 1/166 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGGKDSIVE-IETVSTGSLSLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           QALEITD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QAR
Sbjct: 120 QALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEMGDSLPGLQAR 165


>gi|25808099|gb|AAN74114.1| RecA [Helicobacter pylori]
          Length = 203

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 137/203 (67%), Positives = 170/203 (83%), Gaps = 1/203 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVY 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    LVFINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTRV 252
           R+DIRR+ S+K  +   GN+ + 
Sbjct: 181 RIDIRRIASLKQNEQHIGNRAKA 203


>gi|68637294|emb|CAF21788.1| recombinase A [Lactobacillus paracasei subsp. tolerans]
          Length = 200

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 133/199 (66%), Positives = 164/199 (82%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           + VVSSGSL +D ALG+GGFP+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   VSVVSSGSLAVDDALGVGGFPRGRIVEIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGV++  LL+SQPDTGEQ LEI D L  S A+DI+VIDSVAAL PRAEIE
Sbjct: 62  NAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELFASVAIDIVVIDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG++  G+QARLMS ALRKL+ SI+++K I +FINQ+R K+G++FGSPETT GG ALK
Sbjct: 122 GDMGDAHVGLQARLMSLALRKLSGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKDKD 243
           FY++VRL+IRR   IK   
Sbjct: 182 FYATVRLEIRRSEQIKTGA 200


>gi|229458622|gb|ACQ65969.1| recombinase A [Bradyrhizobium liaoningense]
 gi|229458659|gb|ACQ65987.1| recombinase A [Bradyrhizobium sp. SEMIA 6156]
          Length = 175

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 133/176 (75%), Positives = 156/176 (88%), Gaps = 1/176 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
            AALSQI+R +GKG++M+LG        IE VSSGSLGLDIALGIGG PKGRIVEIYGPE
Sbjct: 1   AAALSQIERQFGKGSVMKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
            D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++
Sbjct: 120 CDTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175


>gi|229458604|gb|ACQ65960.1| recombinase A [Bradyrhizobium japonicum]
 gi|229458606|gb|ACQ65961.1| recombinase A [Bradyrhizobium japonicum]
 gi|229458628|gb|ACQ65972.1| recombinase A [Bradyrhizobium japonicum]
 gi|229458632|gb|ACQ65974.1| recombinase A [Bradyrhizobium japonicum SEMIA 5079]
 gi|229458634|gb|ACQ65975.1| recombinase A [Bradyrhizobium sp. SEMIA 5080]
 gi|229458642|gb|ACQ65979.1| recombinase A [Bradyrhizobium sp. SEMIA 6059]
          Length = 175

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 130/176 (73%), Positives = 156/176 (88%), Gaps = 1/176 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
            AALSQI+R +GKG++M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPE
Sbjct: 1   AAALSQIERQFGKGSVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
            D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++
Sbjct: 120 CDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175


>gi|229458644|gb|ACQ65980.1| recombinase A [Bradyrhizobium sp. SEMIA 6069]
 gi|229458648|gb|ACQ65982.1| recombinase A [Bradyrhizobium sp. SEMIA 6093]
          Length = 175

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 130/175 (74%), Positives = 155/175 (88%), Gaps = 1/175 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG        +E VSSGSLGLDIALG+GG PKGR+VEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRVVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++
Sbjct: 121 DTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175


>gi|261882233|gb|ACY05000.1| recombinase A [Helicobacter pylori]
 gi|261882241|gb|ACY05004.1| recombinase A [Helicobacter pylori]
 gi|261882245|gb|ACY05006.1| recombinase A [Helicobacter pylori]
 gi|261882261|gb|ACY05014.1| recombinase A [Helicobacter pylori]
 gi|261882277|gb|ACY05022.1| recombinase A [Helicobacter pylori]
 gi|261882279|gb|ACY05023.1| recombinase A [Helicobacter pylori]
 gi|261882293|gb|ACY05030.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 135/202 (66%), Positives = 170/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVY 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ ++K  +   GN+ +
Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202


>gi|110002985|emb|CAJ57779.1| recombinase A [Sinorhizobium medicae]
          Length = 166

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 136/166 (81%), Positives = 153/166 (92%), Gaps = 1/166 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERAFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQAR
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQAR 165


>gi|189016838|gb|ACD70386.1| recombinase protein A [Mesorhizobium sp. CCBAU 65333]
          Length = 157

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 120/154 (77%), Positives = 140/154 (90%), Gaps = 1/154 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 5   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 64  IEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEI
Sbjct: 124 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEI 157


>gi|261882227|gb|ACY04997.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 137/202 (67%), Positives = 170/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+  +K  +   GN+ +
Sbjct: 181 RIDIRRIAGLKQNEQHIGNRAK 202


>gi|89143231|emb|CAJ57510.1| recombinase A [Microbacterium arborescens]
          Length = 203

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 141/203 (69%), Positives = 167/203 (82%)

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTL LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI DM
Sbjct: 1   KTTLTLHAIANAQRAGGIAAFIDAEHALDPSYAQKLGVDIDALLVSQPDTGEQALEIADM 60

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           L+RSGA+D++VIDSVAAL P AEI+G+MG+S  G+QARLMSQALRKLT  ++++K   +F
Sbjct: 61  LIRSGAIDLVVIDSVAALVPEAEIKGEMGDSHVGLQARLMSQALRKLTGGLNQTKTTAIF 120

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           INQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKM
Sbjct: 121 INQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKM 180

Query: 260 ASPFKQVEFDIMYGEGISFFGEL 282
           A PFKQ EFDI+YG GIS  G L
Sbjct: 181 APPFKQAEFDILYGVGISREGSL 203


>gi|160375121|gb|ABX38944.1| recombinase protein A [Mesorhizobium caraganae]
          Length = 159

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 122/155 (78%), Positives = 141/155 (90%), Gaps = 1/155 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 6   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 64

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 65  VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 124

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           GEQALEI D LVRSGA+D++V+DSVAALTPRAEIE
Sbjct: 125 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIE 159


>gi|6694831|gb|AAF25416.1|AF214769_1 RecA protein [Arthrobacter sp. 'SMCC G986']
          Length = 204

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 141/204 (69%), Positives = 170/204 (83%)

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD   LL+SQPDTGE
Sbjct: 1   IYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPEYAAKLGVDTDALLVSQPDTGE 60

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI DMLV SG++DI+VIDSVAAL PRAEIEGDMG+S  G+QARLMSQALRK+T  +S
Sbjct: 61  QALEIMDMLVGSGSLDIVVIDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKITGRLS 120

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           ++K   +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+     GN+T+
Sbjct: 121 QTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIQTLKEGADSVGNRTK 180

Query: 252 VKVVKNKMASPFKQVEFDIMYGEG 275
            K+VKNKMA PFK  EFDI+YG+G
Sbjct: 181 AKIVKNKMAPPFKIAEFDIIYGQG 204


>gi|110003013|emb|CAJ57793.1| recombinase A [Ensifer adhaerens]
          Length = 166

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 135/166 (81%), Positives = 152/166 (91%), Gaps = 1/166 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRIVE
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIVE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQAR
Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQAR 165


>gi|229458614|gb|ACQ65965.1| recombinase A [Bradyrhizobium sp. SEMIA 695]
 gi|229458650|gb|ACQ65983.1| recombinase A [Bradyrhizobium sp. SEMIA 6099]
 gi|229458657|gb|ACQ65986.1| recombinase A [Bradyrhizobium sp. SEMIA 6152]
 gi|229458661|gb|ACQ65988.1| recombinase A [Bradyrhizobium sp. SEMIA 6160]
          Length = 175

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 131/175 (74%), Positives = 155/175 (88%), Gaps = 1/175 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG        +E VSSGSLGLDIALG+GG PKGRIVEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRIVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIA 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++
Sbjct: 121 DTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175


>gi|307343366|emb|CBJ18124.1| recombinase A [Polymorphospora rubra]
          Length = 187

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 131/187 (70%), Positives = 160/187 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VE+YGPESSGKTT+ALH +A +Q+ GG  AF+DAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEVYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNSTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVRLDIR 234
           SVRLD+R
Sbjct: 181 SVRLDVR 187


>gi|229458667|gb|ACQ65991.1| recombinase A [Bradyrhizobium sp. SEMIA 6179]
          Length = 175

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 130/176 (73%), Positives = 155/176 (88%), Gaps = 1/176 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
            AALSQI+R +GKG++M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPE
Sbjct: 1   AAALSQIERQFGKGSVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
            D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++
Sbjct: 120 CDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175


>gi|261882321|gb|ACY05044.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 136/202 (67%), Positives = 171/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GS+GLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSVGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ ++K  +   GN+ +
Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202


>gi|229458665|gb|ACQ65990.1| recombinase A [Bradyrhizobium sp. SEMIA 6164]
          Length = 175

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 133/176 (75%), Positives = 156/176 (88%), Gaps = 1/176 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
            AALSQI+R +GKG++M+LG        IE VSSGSLGLDIALGIGG PKGRIVEIYGPE
Sbjct: 1   AAALSQIERQFGKGSVMKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
            D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++
Sbjct: 120 CDTLVRSGAVDVMVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175


>gi|261882255|gb|ACY05011.1| recombinase A [Helicobacter pylori]
 gi|261882299|gb|ACY05033.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 136/202 (67%), Positives = 170/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVY 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    LVFINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ ++K  +   GN+ +
Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202


>gi|88705826|ref|ZP_01103535.1| RecA bacterial DNA recombination protein [Congregibacter litoralis
           KT71]
 gi|88699897|gb|EAQ97007.1| RecA bacterial DNA recombination protein [Congregibacter litoralis
           KT71]
          Length = 174

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 112/171 (65%), Positives = 139/171 (81%), Gaps = 2/171 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +K KALEAAL QI R +GKG +M++G    +   I  +S+GSLGLD+ALGIGG PKGR
Sbjct: 2   NANKEKALEAALGQIDRQFGKGTVMRMGDSDRV--AIPSISTGSLGLDVALGIGGLPKGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I EI+GPESSGKTTL L  IA++QK GGT AF+DAEHALD IYA KLGV + +L++SQPD
Sbjct: 60  ICEIFGPESSGKTTLTLQVIAEAQKAGGTAAFIDAEHALDPIYAEKLGVQIDDLIVSQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
           TGEQALE+ +MLVRSGAVD++V+DSVAALTPRAEIEGDMG+S  G+ + ++
Sbjct: 120 TGEQALEVAEMLVRSGAVDVLVVDSVAALTPRAEIEGDMGDSHVGLHSCVL 170


>gi|261882335|gb|ACY05051.1| recombinase A [Helicobacter pylori]
 gi|261882359|gb|ACY05063.1| recombinase A [Helicobacter pylori]
 gi|261882369|gb|ACY05068.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 136/202 (67%), Positives = 171/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTT++LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTISLHIIAECQKNGGVCAFIDAEHALDVH 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ ++K  +   GN+ +
Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202


>gi|110002981|emb|CAJ57777.1| recombinase A [Sinorhizobium meliloti]
          Length = 166

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 136/166 (81%), Positives = 153/166 (92%), Gaps = 1/166 (0%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           KSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+E
Sbjct: 1   KSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIE 59

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGE
Sbjct: 60  IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           QALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQAR
Sbjct: 120 QALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQAR 165


>gi|261882367|gb|ACY05067.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 136/202 (67%), Positives = 170/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSL LD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLRLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ ++K  +   GN+ +
Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202


>gi|189016834|gb|ACD70384.1| recombinase protein A [Mesorhizobium sp. CCBAU 65327]
          Length = 158

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 122/159 (76%), Positives = 142/159 (89%), Gaps = 1/159 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P
Sbjct: 1   EDKSVDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLP 59

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 60  RGRIIEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 119

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           QPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIE
Sbjct: 120 QPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIE 158


>gi|29652290|gb|AAO87806.1| RecA [Listeria monocytogenes]
          Length = 190

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 129/192 (67%), Positives = 159/192 (82%), Gaps = 2/192 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA
Sbjct: 1   GSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRSGAVD++
Sbjct: 59  EVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDML 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+R K+GV
Sbjct: 119 VIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVGV 178

Query: 210 MFGSPETTTGGN 221
           MFG+PE T GG 
Sbjct: 179 MFGNPEITPGGR 190


>gi|229458616|gb|ACQ65966.1| recombinase A [Bradyrhizobium canariense]
          Length = 175

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 131/176 (74%), Positives = 155/176 (88%), Gaps = 1/176 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
            AALSQI+R +GKG++M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPE
Sbjct: 1   AAALSQIERQFGKGSVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
            D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++
Sbjct: 120 CDTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175


>gi|68637270|emb|CAF21782.1| recombinase A [Lactobacillus mucosae]
          Length = 200

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 129/200 (64%), Positives = 168/200 (84%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  VSSGSL +D ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   KIATVSSGSLAIDEALGVGGYPRGRIIEMYGPESSGKTTVALHAVAEVQKRGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+ALD  YA+ LGV++K+LL+SQPDTGE+ LEI D L+ SGAVDI+++DSVAAL PRAEI
Sbjct: 61  ENALDPQYAQALGVNVKDLLLSQPDTGEEGLEIADALIASGAVDIVIVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QARLMSQALRKL+  I+++K I +FINQ+R K+GVMFG+PETT GG AL
Sbjct: 121 EGEMGDTHVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS++R++I R   +KD  
Sbjct: 181 KFYSTIRMEIVRGEQLKDGT 200


>gi|307343394|emb|CBJ18138.1| recombinase A [Micromonospora sp. GUI40]
          Length = 187

 Score =  193 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 135/187 (72%), Positives = 161/187 (86%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH++A +Q+ GG  AF+DAEHALD
Sbjct: 1   PTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHSVASAQRLGGIAAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
             YA+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG
Sbjct: 61  PEYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+S
Sbjct: 121 DSHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYAS 180

Query: 229 VRLDIRR 235
           VRLD+RR
Sbjct: 181 VRLDVRR 187


>gi|259053119|emb|CAX48570.1| recA protein [Aeromonas tecta]
 gi|289172340|emb|CAX48572.1| recA protein [Aeromonas eucrenophila]
          Length = 186

 Score =  193 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 143/186 (76%), Positives = 164/186 (88%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L  IA++QK G TCAFVDA
Sbjct: 1   DIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA KLGV++  LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEI
Sbjct: 61  EHALDPIYAAKLGVNVDELLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 121 EGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNAL 180

Query: 224 KFYSSV 229
           KFY+SV
Sbjct: 181 KFYASV 186


>gi|32345022|gb|AAM93521.1| RecA protein [Rickettsia slovaca 13-B]
 gi|32345024|gb|AAM93522.1| RecA protein [Rickettsia slovaca]
 gi|32345026|gb|AAM93523.1| RecA protein [Rickettsia conorii]
 gi|32345028|gb|AAM93524.1| RecA protein [Rickettsia conorii]
 gi|32345030|gb|AAM93525.1| RecA protein [Rickettsia slovaca]
          Length = 192

 Score =  193 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 147/192 (76%), Positives = 173/192 (90%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALGIGG PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  Y
Sbjct: 1   SLGLDIALGIGGVPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+KLGV++  L+ISQPDTGEQALEI D L+RS  +D+I+IDSVAAL P++EIEG+MG++ 
Sbjct: 61  AKKLGVNIDELIISQPDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMGDAQ 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
              QARLMSQALRKLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+
Sbjct: 121 MASQARLMSQALRKLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRI 180

Query: 232 DIRRVGSIKDKD 243
           DIRR+GSIKDK+
Sbjct: 181 DIRRIGSIKDKE 192


>gi|217037923|gb|ACJ76431.1| RecA [Bradyrhizobium sp. STM 3565]
          Length = 170

 Score =  193 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 132/171 (77%), Positives = 151/171 (88%), Gaps = 1/171 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AALSQI+R +GKG++M+LG        IE VSSGSLGLDIALGIGG PKGRIVEIYG
Sbjct: 1   ALAAALSQIERQFGKGSVMKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           EI D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRK
Sbjct: 120 EICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRK 170


>gi|159149116|gb|ABW91114.1| RecA [Rhodobacter sphaeroides]
          Length = 183

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 135/184 (73%), Positives = 159/184 (86%), Gaps = 1/184 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG+   + E IE  S+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTL LH
Sbjct: 1   FGKGSVMKLGANSPVME-IEATSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLTLH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            +A+ QK GG CAFVDAEHALD  YA+KLGV+L  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  VVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLISQPDTGEQALEIVDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           ++IV+DSVAALTP++EIEGDMG+   G QARLMSQA+RKLT+SI RS C+++FINQ+RMK
Sbjct: 120 NLIVVDSVAALTPKSEIEGDMGDMQMGSQARLMSQAMRKLTASIGRSNCMVIFINQIRMK 179

Query: 207 IGVM 210
           IGVM
Sbjct: 180 IGVM 183


>gi|229458608|gb|ACQ65962.1| recombinase A [Bradyrhizobium sp. SEMIA 560]
          Length = 175

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 133/176 (75%), Positives = 155/176 (88%), Gaps = 1/176 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
            AALSQI+R +GKG++M+LG        IE VSSGSLGLDIALGIGG PKGRIVEIYGPE
Sbjct: 1   AAALSQIERQFGKGSVMKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
            D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT SI++
Sbjct: 120 CDTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTDSINK 175


>gi|68637184|emb|CAF21765.1| recombinase A [Lactobacillus frumenti]
          Length = 200

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 129/200 (64%), Positives = 166/200 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  +SSGSL +D ALG+GG+P+GRIVEIYGPESSGKTT+AL  +A+ Q+ GGT A++DA
Sbjct: 1   KIATISSGSLAIDKALGVGGYPRGRIVEIYGPESSGKTTVALQAVAEVQRQGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           ++ALD  YA  LGV++ +LL+SQPDTGEQ LEI D L+ SGAVD++V+DSVAAL PRAEI
Sbjct: 61  QNALDPQYAETLGVNVDDLLLSQPDTGEQGLEIADALISSGAVDLVVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+   G+QARLMSQALRKL+  I+++K I +FINQ+R K+GVMFG+PETTTGG AL
Sbjct: 121 EGEMGDPHVGLQARLMSQALRKLSGEINKTKTIALFINQIREKVGVMFGNPETTTGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS++R++IRR   IK+  
Sbjct: 181 KFYSTIRMEIRRAEQIKNGT 200


>gi|90568908|gb|ABD94348.1| RecA [Thermoanaerobacter mathranii]
 gi|90568910|gb|ABD94349.1| RecA [Thermoanaerobacter thermocopriae]
          Length = 181

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 123/181 (67%), Positives = 150/181 (82%)

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDIIVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    
Sbjct: 1   EQALEIAEALVRSGAVDIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVT 60

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+SK I+VFINQ+R K+G+MFG+PETT GG ALKFY+++RLD+R+V  IK  + I GN+T
Sbjct: 61  SKSKTIVVFINQLREKVGIMFGNPETTPGGRALKFYATIRLDVRKVDPIKQGNEIVGNRT 120

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D+G    I++KSGAW+S+   RLGQGR
Sbjct: 121 RVKVVKNKVAPPFKQAEFDIMYGEGISREGSILDIGTSIDIIEKSGAWYSYGDIRLGQGR 180

Query: 311 E 311
           E
Sbjct: 181 E 181


>gi|159149114|gb|ABW91113.1| RecA [Rhodobacter sp. DQ12-45T]
          Length = 183

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 137/184 (74%), Positives = 158/184 (85%), Gaps = 1/184 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG+   + E IE  S+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTL LH
Sbjct: 1   FGKGSIMKLGADNPVME-IEAASTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLTLH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            +A+ QK GG CAFVDAEHALD  YA+KLGV+L  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  VVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLISQPDTGEQALEIVDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++V+DSVAALTP+ EIEGDMG+   G QARLMSQA+RKLTSSISRS C+++FINQ+RMK
Sbjct: 120 SLVVVDSVAALTPKPEIEGDMGDMQMGSQARLMSQAMRKLTSSISRSNCMVIFINQIRMK 179

Query: 207 IGVM 210
           IGVM
Sbjct: 180 IGVM 183


>gi|29651987|gb|AAO87656.1| RecA [Listeria monocytogenes]
 gi|29652204|gb|AAO87763.1| RecA [Listeria monocytogenes]
 gi|29652230|gb|AAO87776.1| RecA [Listeria monocytogenes]
          Length = 188

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 128/190 (67%), Positives = 158/190 (83%), Gaps = 2/190 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA
Sbjct: 1   GSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRSGAVD++
Sbjct: 59  EVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDML 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+R K+GV
Sbjct: 119 VIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVGV 178

Query: 210 MFGSPETTTG 219
           MFG+PE T G
Sbjct: 179 MFGNPEITPG 188


>gi|68637299|emb|CAF21789.1| recombinase A [Lactobacillus paracasei subsp. paracasei]
          Length = 200

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 135/199 (67%), Positives = 166/199 (83%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           + VVSSGSL +D ALG+G FP+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE
Sbjct: 2   VSVVSSGSLAVDDALGVGSFPRGRIVEIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  YA  LGV++  LL+SQPDTGEQ LEI D LV SGA+DI+VIDSVAAL PRAEIE
Sbjct: 62  NAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG++  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+G++FGSPETT GG ALK
Sbjct: 122 GDMGDAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALK 181

Query: 225 FYSSVRLDIRRVGSIKDKD 243
           FY++VRL+IRR   IK   
Sbjct: 182 FYATVRLEIRRSEQIKTGA 200


>gi|257650090|emb|CAX48564.1| recA protein [Aeromonas piscicola]
 gi|257650092|emb|CAX48565.1| recA protein [Aeromonas piscicola]
 gi|257650094|emb|CAX48566.1| recA protein [Aeromonas piscicola]
 gi|257650096|emb|CAX48567.1| recA protein [Aeromonas piscicola]
 gi|289172334|emb|CAX48568.1| recA protein [Aeromonas sp. AH-3]
 gi|289172378|emb|CAX48596.1| recA protein [Aeromonas popoffii]
 gi|289172382|emb|CAX48598.1| recA protein [Aeromonas bestiarum]
          Length = 186

 Score =  193 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 141/186 (75%), Positives = 164/186 (88%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L  IA++QK G  CAF+DA
Sbjct: 1   DIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKVCAFIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEI
Sbjct: 61  EHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 121 EGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNAL 180

Query: 224 KFYSSV 229
           KFY+SV
Sbjct: 181 KFYASV 186


>gi|118197632|ref|YP_874025.1| RecA/RadA recombinase [Thermus phage phiYS40]
 gi|116266323|gb|ABJ91406.1| RecA/RadA recombinase [Thermus phage phiYS40]
          Length = 339

 Score =  193 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 128/329 (38%), Positives = 197/329 (59%), Gaps = 13/329 (3%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +K K +   +S   + + K  I          E I  VS+G L +D+ALGIGG P G+
Sbjct: 2   NTEKIKQI---ISSYAKKFSKEEIYTGQELKQTKEEI--VSTGILTVDLALGIGGIPMGK 56

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+E+YG ESSGKTT +L TI+Q QK    CAF+DAE++ D I+A  LGV+L  LL+ + +
Sbjct: 57  IIEVYGQESSGKTTFSLITISQMQKANKICAFIDAENSFDPIWAETLGVNLDELLLIEAN 116

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           + E++LE  + L+  G V  +V DS+ A    ++   D G+SL G++AR++S AL KL  
Sbjct: 117 SLEESLEKLEFLINQG-VKYVVYDSIVAPPTVSQNNADYGDSLVGVRARILSMALSKLMP 175

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            I ++K  ++FINQ+R KIGV +G+PETT GG ALKF+SS+RL++R+   IKD+D   G+
Sbjct: 176 IIRQNKATIMFINQIREKIGV-YGNPETTPGGRALKFFSSLRLNMRKK-PIKDEDGEIGD 233

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS---FKGQR 305
           +  VKV KNK A P ++ +F + Y    S+  +  ++  +  +V KSGAW+       ++
Sbjct: 234 EVHVKVEKNKFAPPMRKAKFLLFYDG--SYTIDYPEILSQLGLVKKSGAWYKEQITGEEK 291

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQN 334
              G       ++ N   AE ++  +R+ 
Sbjct: 292 TFHGAIQLIEEIKNNKPFAELVDQKIREK 320


>gi|32345032|gb|AAM93526.1| RecA protein [Rickettsia massiliae MTU5]
          Length = 192

 Score =  193 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 148/192 (77%), Positives = 174/192 (90%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALGIGG PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  Y
Sbjct: 1   SLGLDIALGIGGIPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+KLGV++  L+ISQPDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++ 
Sbjct: 61  AKKLGVNIDELIISQPDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQ 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
              QARLMSQALRKLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+
Sbjct: 121 MASQARLMSQALRKLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRI 180

Query: 232 DIRRVGSIKDKD 243
           DIRR+GSIKDK+
Sbjct: 181 DIRRIGSIKDKE 192


>gi|299152209|gb|ADJ18194.1| recombinase A [Rhizobium miluonense]
          Length = 183

 Score =  193 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 144/182 (79%), Positives = 169/182 (92%), Gaps = 1/182 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           +G++M+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TI
Sbjct: 3   RGSVMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 61

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 62  AEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDV 121

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+SK +++FINQ+RMKIG
Sbjct: 122 LVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSKTMVIFINQIRMKIG 181

Query: 209 VM 210
           VM
Sbjct: 182 VM 183


>gi|261882349|gb|ACY05058.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  193 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 136/202 (67%), Positives = 170/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GS GLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSSGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ ++K  +   GN+ +
Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202


>gi|33087847|gb|AAP93054.1| recombination protein A [Yersinia kristensenii]
          Length = 176

 Score =  193 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 117/178 (65%), Positives = 145/178 (81%), Gaps = 2/178 (1%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           + +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL 
Sbjct: 1   KQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLT 58

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSG
Sbjct: 59  LQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSG 118

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           AVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ
Sbjct: 119 AVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQ 176


>gi|262064654|gb|ACY07561.1| recombinase A [Rhizobium sp. RPVN06]
          Length = 170

 Score =  193 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 135/171 (78%), Positives = 157/171 (91%), Gaps = 1/171 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTT
Sbjct: 1   IERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVR
Sbjct: 60  LALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SI  S
Sbjct: 120 SGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIRMS 170


>gi|118767331|gb|ABL11501.1| RecA [Rhizobium phaseoli]
          Length = 173

 Score =  193 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 138/174 (79%), Positives = 158/174 (90%), Gaps = 1/174 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI+R +GKG+IM+LGS   + E IE +S+GSLGLDIALG+ G PKGRI+EIYGPESSGKT
Sbjct: 1   QIERSFGKGSIMKLGSNEKVIE-IETISTGSLGLDIALGVXGLPKGRIIEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LV
Sbjct: 60  TLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           RSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S  
Sbjct: 120 RSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNT 173


>gi|32345034|gb|AAM93527.1| RecA protein [Rickettsia sp. Bar29]
 gi|32345036|gb|AAM93528.1| RecA protein [Rickettsia helvetica]
          Length = 192

 Score =  193 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 148/192 (77%), Positives = 174/192 (90%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALGIGG PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  Y
Sbjct: 1   SLGLDIALGIGGVPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+KLGV++  L+ISQPDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++ 
Sbjct: 61  AKKLGVNIDELIISQPDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQ 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
              QARLMSQALRKLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+
Sbjct: 121 MASQARLMSQALRKLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRI 180

Query: 232 DIRRVGSIKDKD 243
           DIRR+GSIKDK+
Sbjct: 181 DIRRIGSIKDKE 192


>gi|189016824|gb|ACD70379.1| recombinase protein A [Rhizobium sp. CCBAU 03285]
          Length = 160

 Score =  193 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 128/161 (79%), Positives = 146/161 (90%), Gaps = 1/161 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P
Sbjct: 1   EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLP 59

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           +GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 60  RGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 119

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEGD
Sbjct: 120 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGD 160


>gi|89145171|emb|CAJ57521.1| recombinase A [Microbacterium ketosireducens]
          Length = 204

 Score =  193 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 140/203 (68%), Positives = 167/203 (82%)

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA  Q+ GG  AF+DAEHALD  YA+KLGVD+ +LL+SQPDTGEQALEI DMLVRSGA+
Sbjct: 1   AIANVQRAGGIAAFIDAEHALDPDYAQKLGVDIDSLLVSQPDTGEQALEIADMLVRSGAI 60

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  ++++   ++FINQ+R K
Sbjct: 61  DLVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLREK 120

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA PFKQ 
Sbjct: 121 IGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGSDAVGNRTRVKVVKNKMAPPFKQA 180

Query: 267 EFDIMYGEGISFFGELIDLGVKA 289
           EFDI+YG GIS  G LID GV+ 
Sbjct: 181 EFDILYGVGISREGSLIDFGVEH 203


>gi|193795049|gb|ACF21658.1| RecA [Sinorhizobium sp. 209]
 gi|193795057|gb|ACF21661.1| RecA [Sinorhizobium sp. 74]
          Length = 165

 Score =  193 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 136/165 (82%), Positives = 152/165 (92%), Gaps = 1/165 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKALEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEI
Sbjct: 1   SKALEAALSQIERSFGKGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQAR
Sbjct: 120 ALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQAR 164


>gi|160947846|gb|ABX54732.1| RecA protein [Rhizobium gallicum]
          Length = 163

 Score =  193 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 127/161 (78%), Positives = 144/161 (89%), Gaps = 1/161 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSL LDIALGIGG P
Sbjct: 4   EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLSLDIALGIGGLP 62

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 63  KGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 122

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEI G+
Sbjct: 123 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIVGE 163


>gi|307343388|emb|CBJ18135.1| recombinase A [Micromonospora sp. GUI28]
          Length = 184

 Score =  193 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 133/184 (72%), Positives = 157/184 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDALLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVRL 231
           SVRL
Sbjct: 181 SVRL 184


>gi|331029415|gb|AEC49857.1| recombinase A [Bradyrhizobium sp. SEMIA 6145]
          Length = 174

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 128/174 (73%), Positives = 153/174 (87%), Gaps = 1/174 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG        +E VSSGSLGLDIALG+GG PKGR+VE YGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRVVEXYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI+
Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASIN 174


>gi|261882225|gb|ACY04996.1| recombinase A [Helicobacter pylori]
          Length = 202

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 136/202 (67%), Positives = 170/202 (84%), Gaps = 1/202 (0%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  
Sbjct: 1   GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ 
Sbjct: 61  YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229
             G+QARLMS ALRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV
Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180

Query: 230 RLDIRRVGSIKDKDSITGNQTR 251
           R+DIRR+ ++K  +   G + +
Sbjct: 181 RIDIRRIAALKQNEQHIGTRAK 202


>gi|307343133|emb|CBJ18096.1| recombinase A [Micromonospora aurantiaca]
 gi|307343139|emb|CBJ18099.1| recombinase A [Micromonospora chalcea]
          Length = 184

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 133/184 (72%), Positives = 157/184 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YAR LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYARALGVDTDALLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVRL 231
           SVRL
Sbjct: 181 SVRL 184


>gi|213950736|gb|ACJ54613.1| recombination protein A [Ochrobactrum sp. CCBAU 61222]
          Length = 174

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 136/173 (78%), Positives = 154/173 (89%), Gaps = 2/173 (1%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG    +   IE V +GSL LDIALG+GG PKGRIVEIYGPESSGKTTLALH
Sbjct: 1   FGKGSIMRLGQNEVV--DIETVPTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTLALH 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+
Sbjct: 59  TIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAI 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRSK    F
Sbjct: 119 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSKLHCHF 171


>gi|29652092|gb|AAO87708.1| RecA [Listeria monocytogenes]
          Length = 179

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 122/181 (67%), Positives = 151/181 (83%), Gaps = 2/181 (1%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH
Sbjct: 1   FGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALH 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRSGAV
Sbjct: 59  AIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAV 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           DI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+R K
Sbjct: 119 DILVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREK 178

Query: 207 I 207
           +
Sbjct: 179 V 179


>gi|16565220|gb|AAL26143.1|AF311587_1 recombinase A [Vibrio vulnificus]
          Length = 181

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 122/183 (66%), Positives = 153/183 (83%), Gaps = 2/183 (1%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDQLLVSQPDTGEQALEICDALARSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAVRKLTGNLKQSNCMCIFINQIRMKI 178

Query: 208 GVM 210
           GV 
Sbjct: 179 GVK 181


>gi|229458654|gb|ACQ65985.1| recombinase A [Bradyrhizobium sp. SEMIA 6146]
          Length = 175

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 129/175 (73%), Positives = 154/175 (88%), Gaps = 1/175 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG        +E VS GSLGLDIALG+GG PKGRIVEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSM-DVETVSRGSLGLDIALGVGGLPKGRIVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++
Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175


>gi|291246142|gb|ADD85195.1| RecA [Borrelia recurrentis]
          Length = 213

 Score =  192 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 131/212 (61%), Positives = 178/212 (83%), Gaps = 1/212 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+++++G    + + +E + SG + LD A+GIGG+P+GR+VEI+GPESSGKTTL L  
Sbjct: 1   GKGSLIKMGE-SPVGKYLESIPSGFILLDEAIGIGGYPRGRVVEIFGPESSGKTTLTLQA 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QKTGG  AF+DAEHALD +YAR LGV++  L +SQPDTGEQAL+I + L+RSG VD
Sbjct: 60  IAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQPDTGEQALDIAEYLIRSGGVD 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IV+DSVAAL P+AEI+G+MG++  G+QARLMS+ALRK+T+ +S+S   ++FINQ+RMKI
Sbjct: 120 LIVVDSVAALMPQAEIDGEMGDTQIGLQARLMSKALRKITAILSKSNACIMFINQIRMKI 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           G++FGSPETTTGGNALKFYSS+RL++R+V  +
Sbjct: 180 GLVFGSPETTTGGNALKFYSSLRLEVRKVEQV 211


>gi|227183981|gb|ACP20109.1| RecA [Bradyrhizobium sp. ORS285]
 gi|227183983|gb|ACP20110.1| RecA [Bradyrhizobium sp. ORS287]
 gi|227183985|gb|ACP20111.1| RecA [Bradyrhizobium sp. ORS294]
 gi|227183987|gb|ACP20112.1| RecA [Bradyrhizobium sp. ORS297]
 gi|227183991|gb|ACP20114.1| RecA [Bradyrhizobium sp. ORS300]
 gi|227183995|gb|ACP20116.1| RecA [Bradyrhizobium sp. ORS303]
 gi|227184001|gb|ACP20119.1| RecA [Bradyrhizobium sp. ORS307]
 gi|227184009|gb|ACP20123.1| RecA [Bradyrhizobium sp. ORS324]
 gi|227184011|gb|ACP20124.1| RecA [Bradyrhizobium sp. ORS327]
 gi|227184013|gb|ACP20125.1| RecA [Bradyrhizobium sp. ORS328]
 gi|227184017|gb|ACP20127.1| RecA [Bradyrhizobium sp. ORS331]
 gi|227184021|gb|ACP20129.1| RecA [Bradyrhizobium sp. ORS344]
 gi|227184025|gb|ACP20131.1| RecA [Bradyrhizobium sp. ORS356]
 gi|227184029|gb|ACP20133.1| RecA [Bradyrhizobium sp. ORS361]
 gi|227184031|gb|ACP20134.1| RecA [Bradyrhizobium sp. ORS368]
 gi|227184035|gb|ACP20136.1| RecA [Bradyrhizobium sp. ORS375]
 gi|227184039|gb|ACP20138.1| RecA [Bradyrhizobium sp. ORS385]
          Length = 174

 Score =  192 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 128/175 (73%), Positives = 154/175 (88%), Gaps = 1/175 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG++M+LG        +E VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTT
Sbjct: 1   IERQFGKGSVMKLGKNDRSM-DVETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVR
Sbjct: 60  LALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           SGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 SGAVDVLVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 174


>gi|291246090|gb|ADD85173.1| RecA [Borrelia duttonii]
          Length = 216

 Score =  192 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 116/215 (53%), Positives = 166/215 (77%), Gaps = 2/215 (0%)

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +  L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAALTP+AEI+G+MG++  G+QARL
Sbjct: 2   INELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALTPQAEIDGEMGDTQIGLQARL 61

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MS+ALRK+T+ +S+S   ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V  
Sbjct: 62  MSKALRKITAILSKSNTCIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKVEQ 121

Query: 239 I--KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
           +     D++ GN+ RVKVVKNK+A PF++ E  + +G+GIS    ++D  +K ++V KSG
Sbjct: 122 VIGSSSDNVIGNKIRVKVVKNKVAPPFRKAELIVYFGKGISREASILDAAIKYNLVQKSG 181

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLL 331
           +W++     LGQGREN   +L +   +A  +E+ L
Sbjct: 182 SWYAMGDDNLGQGRENVIEYLFKEKALANELENKL 216


>gi|29652052|gb|AAO87688.1| RecA [Listeria monocytogenes]
          Length = 175

 Score =  192 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 117/177 (66%), Positives = 147/177 (83%), Gaps = 2/177 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +F
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIF 175


>gi|16565116|gb|AAL26091.1|AF311535_1 recombinase A [Vibrio vulnificus]
 gi|16565118|gb|AAL26092.1|AF311536_1 recombinase A [Vibrio vulnificus]
 gi|16565120|gb|AAL26093.1|AF311537_1 recombinase A [Vibrio vulnificus]
 gi|16565122|gb|AAL26094.1|AF311538_1 recombinase A [Vibrio vulnificus]
 gi|16565124|gb|AAL26095.1|AF311539_1 recombinase A [Vibrio vulnificus]
 gi|16565126|gb|AAL26096.1|AF311540_1 recombinase A [Vibrio vulnificus]
 gi|16565128|gb|AAL26097.1|AF311541_1 recombinase A [Vibrio vulnificus]
 gi|16565130|gb|AAL26098.1|AF311542_1 recombinase A [Vibrio vulnificus]
 gi|16565132|gb|AAL26099.1|AF311543_1 recombinase A [Vibrio vulnificus]
 gi|16565134|gb|AAL26100.1|AF311544_1 recombinase A [Vibrio vulnificus]
 gi|16565136|gb|AAL26101.1|AF311545_1 recombinase A [Vibrio vulnificus]
 gi|16565138|gb|AAL26102.1|AF311546_1 recombinase A [Vibrio vulnificus]
 gi|16565140|gb|AAL26103.1|AF311547_1 recombinase A [Vibrio vulnificus]
 gi|16565142|gb|AAL26104.1|AF311548_1 recombinase A [Vibrio vulnificus]
 gi|16565144|gb|AAL26105.1|AF311549_1 recombinase A [Vibrio vulnificus]
 gi|16565146|gb|AAL26106.1|AF311550_1 recombinase A [Vibrio vulnificus]
 gi|16565148|gb|AAL26107.1|AF311551_1 recombinase A [Vibrio vulnificus]
 gi|16565150|gb|AAL26108.1|AF311552_1 recombinase A [Vibrio vulnificus]
 gi|16565152|gb|AAL26109.1|AF311553_1 recombinase A [Vibrio vulnificus]
 gi|16565154|gb|AAL26110.1|AF311554_1 recombinase A [Vibrio vulnificus]
 gi|16565156|gb|AAL26111.1|AF311555_1 recombinase A [Vibrio vulnificus]
 gi|16565158|gb|AAL26112.1|AF311556_1 recombinase A [Vibrio vulnificus]
 gi|16565160|gb|AAL26113.1|AF311557_1 recombinase A [Vibrio vulnificus]
 gi|16565162|gb|AAL26114.1|AF311558_1 recombinase A [Vibrio vulnificus]
 gi|16565164|gb|AAL26115.1|AF311559_1 recombinase A [Vibrio vulnificus]
 gi|16565168|gb|AAL26117.1|AF311561_1 recombinase A [Vibrio vulnificus]
 gi|16565170|gb|AAL26118.1|AF311562_1 recombinase A [Vibrio vulnificus]
 gi|16565172|gb|AAL26119.1|AF311563_1 recombinase A [Vibrio vulnificus]
 gi|16565174|gb|AAL26120.1|AF311564_1 recombinase A [Vibrio vulnificus]
 gi|16565176|gb|AAL26121.1|AF311565_1 recombinase A [Vibrio vulnificus]
 gi|16565178|gb|AAL26122.1|AF311566_1 recombinase A [Vibrio vulnificus]
 gi|16565180|gb|AAL26123.1|AF311567_1 recombinase A [Vibrio vulnificus]
 gi|16565182|gb|AAL26124.1|AF311568_1 recombinase A [Vibrio vulnificus]
 gi|16565184|gb|AAL26125.1|AF311569_1 recombinase A [Vibrio vulnificus]
 gi|16565186|gb|AAL26126.1|AF311570_1 recombinase A [Vibrio vulnificus]
 gi|16565188|gb|AAL26127.1|AF311571_1 recombinase A [Vibrio vulnificus]
 gi|16565190|gb|AAL26128.1|AF311572_1 recombinase A [Vibrio vulnificus]
 gi|16565192|gb|AAL26129.1|AF311573_1 recombinase A [Vibrio vulnificus]
 gi|16565194|gb|AAL26130.1|AF311574_1 recombinase A [Vibrio vulnificus]
 gi|16565196|gb|AAL26131.1|AF311575_1 recombinase A [Vibrio vulnificus]
 gi|16565198|gb|AAL26132.1|AF311576_1 recombinase A [Vibrio vulnificus]
 gi|16565202|gb|AAL26134.1|AF311578_1 recombinase A [Vibrio vulnificus]
 gi|16565204|gb|AAL26135.1|AF311579_1 recombinase A [Vibrio vulnificus]
 gi|16565206|gb|AAL26136.1|AF311580_1 recombinase A [Vibrio vulnificus]
 gi|16565208|gb|AAL26137.1|AF311581_1 recombinase A [Vibrio vulnificus]
 gi|16565210|gb|AAL26138.1|AF311582_1 recombinase A [Vibrio vulnificus]
 gi|16565212|gb|AAL26139.1|AF311583_1 recombinase A [Vibrio vulnificus]
 gi|16565214|gb|AAL26140.1|AF311584_1 recombinase A [Vibrio vulnificus]
 gi|16565216|gb|AAL26141.1|AF311585_1 recombinase A [Vibrio vulnificus]
 gi|16565218|gb|AAL26142.1|AF311586_1 recombinase A [Vibrio vulnificus]
 gi|16565222|gb|AAL26144.1|AF311588_1 recombinase A [Vibrio vulnificus]
 gi|16565224|gb|AAL26145.1|AF311589_1 recombinase A [Vibrio vulnificus]
 gi|16565226|gb|AAL26146.1|AF311590_1 recombinase A [Vibrio vulnificus]
 gi|16565228|gb|AAL26147.1|AF311591_1 recombinase A [Vibrio vulnificus]
 gi|16565230|gb|AAL26148.1|AF311592_1 recombinase A [Vibrio vulnificus]
 gi|16565232|gb|AAL26149.1|AF311593_1 recombinase A [Vibrio vulnificus]
 gi|16565234|gb|AAL26150.1|AF311594_1 recombinase A [Vibrio vulnificus]
 gi|16565236|gb|AAL26151.1|AF311595_1 recombinase A [Vibrio vulnificus]
 gi|16565238|gb|AAL26152.1|AF311596_1 recombinase A [Vibrio vulnificus]
          Length = 181

 Score =  192 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 122/183 (66%), Positives = 153/183 (83%), Gaps = 2/183 (1%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDQLLVSQPDTGEQALEICDALARSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178

Query: 208 GVM 210
           GV 
Sbjct: 179 GVK 181


>gi|289172380|emb|CAX48597.1| recA protein [Aeromonas popoffii]
          Length = 186

 Score =  192 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 140/186 (75%), Positives = 164/186 (88%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L  IA++QK G  C+F+DA
Sbjct: 1   DIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKVCSFIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEI
Sbjct: 61  EHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 121 EGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNAL 180

Query: 224 KFYSSV 229
           KFY+SV
Sbjct: 181 KFYASV 186


>gi|229458646|gb|ACQ65981.1| recombinase A [Bradyrhizobium sp. SEMIA 6077]
          Length = 175

 Score =  192 bits (487), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 132/176 (75%), Positives = 156/176 (88%), Gaps = 1/176 (0%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
            AALSQI+R +GKG++M+LG +      IE VSSGSLGLDIALGIGG PKGRIVEIYGPE
Sbjct: 1   AAALSQIERQFGKGSVMKLG-KSDRSMDIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPE 59

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALHT A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI
Sbjct: 60  SSGKTTLALHTEAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
            D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++
Sbjct: 120 CDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175


>gi|160947852|gb|ABX54735.1| RecA protein [Phyllobacterium sp. CCBAU 73021]
          Length = 163

 Score =  192 bits (487), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 126/161 (78%), Positives = 144/161 (89%), Gaps = 1/161 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE VS+GSL LDIALG+GG P
Sbjct: 4   EDKSVDKTKALDAALSQIERAFGKGSIMRLGRNEQVVE-IETVSTGSLSLDIALGVGGLP 62

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 63  KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 122

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+
Sbjct: 123 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGE 163


>gi|160947822|gb|ABX54720.1| RecA protein [Rhizobium sp. CCBAU 13027]
          Length = 166

 Score =  192 bits (487), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 130/164 (79%), Positives = 148/164 (90%), Gaps = 1/164 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LG + S+ E +E VS+GSL LD+ALGIGG P
Sbjct: 4   EDKSVDKSKALEAALSQIERSFGKGSIMKLGGKDSVIE-VETVSTGSLSLDVALGIGGLP 62

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD IYARKLGVDL+NLLIS
Sbjct: 63  KGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPIYARKLGVDLENLLIS 122

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+
Sbjct: 123 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGD 166


>gi|68637468|emb|CAF21826.1| recombinase A [Lactococcus lactis subsp. lactis]
          Length = 200

 Score =  192 bits (487), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 129/200 (64%), Positives = 162/200 (81%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            + VVSSGSL LDIALG GG+PKGRIVEIYGPESSGKTT+ALH +A  QK GG  AF+DA
Sbjct: 1   KVSVVSSGSLALDIALGAGGYPKGRIVEIYGPESSGKTTVALHAVAAVQKEGGIAAFIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+ALD  YA+ LGV++  LL+SQPD GEQ L+I + L+ SGAVD++VIDSVAAL P+AEI
Sbjct: 61  ENALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAALVPKAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           +G++G+S  G+QAR+MSQA+RKL   I+++K   +FINQ+R K+GVMFGSPETT GG AL
Sbjct: 121 DGEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETTPGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFY+SVRLD+R    I++  
Sbjct: 181 KFYASVRLDVRGSTKIEEGS 200


>gi|307343420|emb|CBJ18151.1| recombinase A [Micromonospora sp. SG8]
          Length = 186

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 134/186 (72%), Positives = 159/186 (85%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD
Sbjct: 1   PTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
             YA+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG
Sbjct: 61  PEYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+S
Sbjct: 121 DSHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYAS 180

Query: 229 VRLDIR 234
           VRLD+R
Sbjct: 181 VRLDVR 186


>gi|307343143|emb|CBJ18101.1| recombinase A [Micromonospora chokoriensis]
          Length = 189

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 133/189 (70%), Positives = 162/189 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG P+GR++E+YGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGVGGLPRGRVIEVYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
            G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRL
Sbjct: 121 VGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRL 180

Query: 232 DIRRVGSIK 240
           D+RR+ S+K
Sbjct: 181 DVRRIESLK 189


>gi|229458680|gb|ACQ65997.1| recombinase A [Bradyrhizobium sp. SEMIA 6440]
          Length = 175

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 128/175 (73%), Positives = 152/175 (86%), Gaps = 1/175 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AALSQI+R +GKG++M+LG        +E VSSGSLGLDIALG  G PKGR VEIYGPES
Sbjct: 2   AALSQIERQFGKGSVMKLGKNDRSM-DVETVSSGSLGLDIALGFAGLPKGRFVEIYGPES 60

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI 
Sbjct: 61  SGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++
Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175


>gi|160947830|gb|ABX54724.1| RecA protein [Mesorhizobium huakuii]
          Length = 166

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 130/167 (77%), Positives = 153/167 (91%), Gaps = 1/167 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTT
Sbjct: 1   IERSFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVR
Sbjct: 60  LALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           SGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S
Sbjct: 120 SGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 166


>gi|227184015|gb|ACP20126.1| RecA [Bradyrhizobium sp. ORS330]
          Length = 174

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 128/175 (73%), Positives = 154/175 (88%), Gaps = 1/175 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG++M+LG        +E VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTT
Sbjct: 1   IERQFGKGSVMKLGKNDRSM-DVETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVR
Sbjct: 60  LALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIHELLISQPDTGEQALEICDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           SGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 SGAVDVLVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 174


>gi|90568912|gb|ABD94350.1| RecA [Thermoanaerobacter mathranii subsp. alimentarius]
 gi|90568914|gb|ABD94351.1| RecA [Thermoanaerobacter mathranii subsp. alimentarius]
          Length = 180

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 122/180 (67%), Positives = 149/180 (82%)

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI + LVRSGAVDIIVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    
Sbjct: 1   EQALEIAEALVRSGAVDIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVT 60

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           S+SK I+VFINQ+R K+G+MFG+PETT GG ALKFY+++RLD+R+V  IK  + I GN+T
Sbjct: 61  SKSKTIVVFINQLREKVGIMFGNPETTPGGRALKFYATIRLDVRKVDPIKQGNEIVGNRT 120

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310
           RVKVVKNK+A PFKQ EFDIMYGEGIS  G ++D+G    I++KSGAW+S+   RLGQGR
Sbjct: 121 RVKVVKNKVAPPFKQAEFDIMYGEGISREGSILDIGTSIDIIEKSGAWYSYGDIRLGQGR 180


>gi|307343346|emb|CBJ18114.1| recombinase A [Micromonospora mirobrigensis]
          Length = 184

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 134/184 (72%), Positives = 158/184 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   LL+SQPDTGEQALEITDMLVRSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPDYAKALGVDTDALLVSQPDTGEQALEITDMLVRSGAIDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVRL 231
           SVRL
Sbjct: 181 SVRL 184


>gi|307343418|emb|CBJ18150.1| recombinase A [Micromonospora sp. SG2]
          Length = 184

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 132/184 (71%), Positives = 158/184 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   LL+SQPDTGEQALEITDMLVRSGA+DI+VIDSVAAL PRAEIEG+M
Sbjct: 61  DPDYAKALGVDTDALLVSQPDTGEQALEITDMLVRSGAIDIVVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVRL 231
           SVRL
Sbjct: 181 SVRL 184


>gi|227183977|gb|ACP20107.1| RecA [Bradyrhizobium sp. ORS277]
 gi|227183979|gb|ACP20108.1| RecA [Bradyrhizobium sp. ORS279]
 gi|227183989|gb|ACP20113.1| RecA [Bradyrhizobium sp. ORS298]
 gi|227184047|gb|ACP20142.1| RecA [Bradyrhizobium sp. ORS400]
          Length = 174

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 128/175 (73%), Positives = 154/175 (88%), Gaps = 1/175 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG++M+LG        +E VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTT
Sbjct: 1   IERQFGKGSVMKLGKNDRSM-DVETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVR
Sbjct: 60  LALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           SGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 SGAVDVMVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 174


>gi|68637329|emb|CAF21797.1| recombinase A [Lactobacillus reuteri]
          Length = 200

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 129/200 (64%), Positives = 166/200 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +  VSSGSL +D ALGIGG+P+GRIVEIYGPESSGKTT+ALH +A+ Q+ GGT A++DA
Sbjct: 1   KVASVSSGSLAIDKALGIGGYPRGRIVEIYGPESSGKTTVALHAVAEVQRQGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+ALD  YA  LGV++ +LL+SQPD+GE+ LEI D L+ SGAVD++++DSVAAL PRAEI
Sbjct: 61  ENALDPQYAEALGVNIDDLLLSQPDSGEEGLEIADALISSGAVDLVIVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           +GDMG++  G+QARLMSQALRKL+  I+++K I +FINQ+R K+GVMFG+PETTTGG AL
Sbjct: 121 DGDMGDTHVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTTGGRAL 180

Query: 224 KFYSSVRLDIRRVGSIKDKD 243
           KFYS+  L+IRR   IK+  
Sbjct: 181 KFYSTSGLEIRRAEQIKNGP 200


>gi|227184005|gb|ACP20121.1| RecA [Bradyrhizobium sp. ORS310]
 gi|227184007|gb|ACP20122.1| RecA [Bradyrhizobium sp. ORS318]
 gi|227184033|gb|ACP20135.1| RecA [Bradyrhizobium sp. ORS372]
 gi|227184037|gb|ACP20137.1| RecA [Bradyrhizobium sp. ORS377]
 gi|227184041|gb|ACP20139.1| RecA [Bradyrhizobium sp. ORS390]
 gi|227184043|gb|ACP20140.1| RecA [Bradyrhizobium sp. ORS391]
 gi|227184045|gb|ACP20141.1| RecA [Bradyrhizobium sp. ORS393]
          Length = 174

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 129/175 (73%), Positives = 154/175 (88%), Gaps = 1/175 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG++M+LG        +E VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTT
Sbjct: 1   IERQFGKGSVMKLGKNDRSM-DVETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A++QK GG CAF+DAEHALD IYARKLGV++  LLISQPDTGEQALEI D LVR
Sbjct: 60  LALHTVAEAQKKGGICAFIDAEHALDPIYARKLGVNIDELLISQPDTGEQALEICDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           SGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 SGAVDVMVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 174


>gi|307343374|emb|CBJ18128.1| recombinase A [Micromonospora sp. GUI12]
          Length = 184

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 132/184 (71%), Positives = 156/184 (84%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YAR LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYARALGVDTDALLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALK Y+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYA 180

Query: 228 SVRL 231
           SVRL
Sbjct: 181 SVRL 184


>gi|193795040|gb|ACF21656.1| RecA [Rhizobium tropici]
          Length = 165

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 133/165 (80%), Positives = 150/165 (90%), Gaps = 1/165 (0%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           SKALEAALS I R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI+EI
Sbjct: 1   SKALEAALSLIDRSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQ
Sbjct: 60  YGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQ 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QAR
Sbjct: 120 ALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQAR 164


>gi|189016826|gb|ACD70380.1| recombinase protein A [Rhizobium sp. CCBAU 03294]
          Length = 158

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 127/156 (81%), Positives = 143/156 (91%), Gaps = 1/156 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE +S+GSL LDIALGIGG PKGRI
Sbjct: 4   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLSLDIALGIGGLPKGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 63  IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG
Sbjct: 123 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEG 158


>gi|269214649|ref|ZP_06158715.1| protein RecA [Neisseria lactamica ATCC 23970]
 gi|269209310|gb|EEZ75765.1| protein RecA [Neisseria lactamica ATCC 23970]
          Length = 196

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 125/182 (68%), Positives = 151/182 (82%), Gaps = 1/182 (0%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DKSKAL AAL+QI++ +GKGAIM++       E +EV+S+GSLGLD+ALG+GG P+GRIV
Sbjct: 4   DKSKALAAALAQIEKSFGKGAIMKM-DGSQQEENLEVISTGSLGLDLALGVGGLPRGRIV 62

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EI+GPESSGKTTL L  +AQ QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDTG
Sbjct: 63  EIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDTG 122

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D LVRSG +D++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  I
Sbjct: 123 EQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGHI 182

Query: 191 SR 192
            +
Sbjct: 183 KK 184


>gi|16565200|gb|AAL26133.1|AF311577_1 recombinase A [Vibrio vulnificus]
          Length = 181

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 121/183 (66%), Positives = 152/183 (83%), Gaps = 2/183 (1%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDQLLVSQPDTGEQALEICDALARSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +F NQ+RMKI
Sbjct: 119 VIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFTNQIRMKI 178

Query: 208 GVM 210
           GV 
Sbjct: 179 GVK 181


>gi|115498181|gb|ABI98670.1| RecA [Bradyrhizobium sp. CCBAU 23230]
          Length = 182

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 137/183 (74%), Positives = 163/183 (89%), Gaps = 1/183 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG        IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT
Sbjct: 1   GKGSIMKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHT 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           +A++QK GG CAF+DAEHALD ++ARKLGV++  LLISQPDTGEQALEI D LVRSGAVD
Sbjct: 60  VAEAQKKGGICAFIDAEHALDPVHARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVD 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 120 VLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 179

Query: 208 GVM 210
           GVM
Sbjct: 180 GVM 182


>gi|29652110|gb|AAO87716.1| RecA [Listeria monocytogenes]
          Length = 187

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 127/189 (67%), Positives = 157/189 (83%), Gaps = 2/189 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA
Sbjct: 1   GSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRSGAVD++
Sbjct: 59  EVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDML 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+R K+GV
Sbjct: 119 VIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVGV 178

Query: 210 MFGSPETTT 218
           MFG+PE T 
Sbjct: 179 MFGNPEITP 187


>gi|118185914|gb|ABK76570.1| RecA [Bacillus coahuilensis]
 gi|118185916|gb|ABK76571.1| RecA [Bacillus coahuilensis]
 gi|118185920|gb|ABK76573.1| RecA [Bacillus coahuilensis]
          Length = 177

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 120/179 (67%), Positives = 149/179 (83%), Gaps = 2/179 (1%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           + AL QI++ +GKG+IM+LG Q      I  +SSGS+ LD ALG+GG+P+GRIVEIYGPE
Sbjct: 1   DMALKQIEKQFGKGSIMKLGEQQD--RKISTISSGSVTLDTALGVGGYPRGRIVEIYGPE 58

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ALH IA+ Q  GG  AF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI
Sbjct: 59  SSGKTTVALHAIAEVQAQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEI 118

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
            + LVRSGAVDI+VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I++SK 
Sbjct: 119 AEALVRSGAVDILVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAINKSKT 177


>gi|25991771|gb|AAN76926.1| RecA [Burkholderia ambifaria]
 gi|25991817|gb|AAN76949.1| RecA [Burkholderia ambifaria]
 gi|25991825|gb|AAN76953.1| RecA [Burkholderia ambifaria]
          Length = 169

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 124/170 (72%), Positives = 149/170 (87%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|225629838|ref|ZP_03787754.1| recombinase A [Wolbachia endosymbiont of Muscidifurax uniraptor]
 gi|225591308|gb|EEH12432.1| recombinase A [Wolbachia endosymbiont of Muscidifurax uniraptor]
          Length = 170

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 113/172 (65%), Positives = 138/172 (80%), Gaps = 2/172 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M    E    DK KAL+ A+SQI++ +GKGAIM+L  + +  E I+ +S+GS+ LD ALG
Sbjct: 1   MASNPEERNSDKQKALDNAISQIEKAFGKGAIMKL--KQNPVEKIDTISTGSIALDSALG 58

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG PKGRI+EI+GPESSGKTTLALH IA++QK GG+CAF+DAEHALD +YARKLGV   
Sbjct: 59  VGGLPKGRIIEIFGPESSGKTTLALHVIAEAQKKGGSCAFIDAEHALDVLYARKLGVSTD 118

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           +L+ISQPDTGEQAL I + LV SGAVD+IVIDSVAALTPRAEIEGDMG+   
Sbjct: 119 DLVISQPDTGEQALHIVEYLVCSGAVDVIVIDSVAALTPRAEIEGDMGDQHM 170


>gi|307343410|emb|CBJ18146.1| recombinase A [Micromonospora sp. CR30]
 gi|307343412|emb|CBJ18147.1| recombinase A [Micromonospora sp. CR36]
          Length = 184

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 130/184 (70%), Positives = 157/184 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVASAQRAGGIAAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   +L+SQPDTGEQALEI DML+RSGA+D+IVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGAIDVIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVRL 231
           SVRL
Sbjct: 181 SVRL 184


>gi|289474497|gb|ADC97868.1| RecA [Agrobacterium rhizogenes]
          Length = 170

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 138/171 (80%), Positives = 157/171 (91%), Gaps = 1/171 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKT
Sbjct: 1   QIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LV
Sbjct: 60  TLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           RSGA+D++V+DSVAALTPRA IEG+MG+SLPG+QARLMSQALRKLT+SISR
Sbjct: 120 RSGAIDVLVVDSVAALTPRAXIEGEMGDSLPGLQARLMSQALRKLTASISR 170


>gi|33087879|gb|AAP93070.1| recombination protein A [Yersinia ruckeri]
          Length = 166

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 116/168 (69%), Positives = 138/168 (82%), Gaps = 2/168 (1%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            KAL AAL QI++ +GKGAIM+LG   S+   +E +S+GSL LDIALG GG P GRIVEI
Sbjct: 1   QKALAAALGQIEKQFGKGAIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEI 58

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQ
Sbjct: 59  YGPESSGKTTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQ 118

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           ALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MS
Sbjct: 119 ALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMS 166


>gi|16565247|gb|AAL26155.1| recombinase A [Listonella anguillarum]
          Length = 181

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 123/183 (67%), Positives = 152/183 (83%), Gaps = 2/183 (1%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSGA+D
Sbjct: 59  IAAAQRVGKTCAFIDAEHALDPIYAKKLGVNIDKLLVSQPDTGEQALEICDALARSGAID 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IVIDSVAALTP AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VIVIDSVAALTPNAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178

Query: 208 GVM 210
           GV 
Sbjct: 179 GVK 181


>gi|25991783|gb|AAN76932.1| RecA [Burkholderia multivorans]
 gi|25991785|gb|AAN76933.1| RecA [Burkholderia multivorans]
 gi|25991835|gb|AAN76958.1| RecA [Burkholderia multivorans]
          Length = 169

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 125/170 (73%), Positives = 149/170 (87%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|289172338|emb|CAX48571.1| recA protein [Aeromonas bivalvium]
          Length = 186

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 139/186 (74%), Positives = 164/186 (88%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSL LD+ALGIGG P GR+VEIYGPESSGKTTL L  IA++Q+ G T AFVDA
Sbjct: 1   DIEAISTGSLSLDVALGIGGLPCGRVVEIYGPESSGKTTLTLQVIAEAQRKGKTFAFVDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEI
Sbjct: 61  EHALDPVYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 121 EGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNAL 180

Query: 224 KFYSSV 229
           KFY+SV
Sbjct: 181 KFYASV 186


>gi|6694827|gb|AAF25412.1|AF214765_1 RecA protein [Arthrobacter sp. 'SMCC G966']
          Length = 203

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 139/202 (68%), Positives = 168/202 (83%)

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD   LL+SQPD
Sbjct: 1   VVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDAEHALDPEYAAKLGVDTDALLVSQPD 60

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DMLV SG++D+IVIDSVAAL PRAEIEGDMG+S  G+QARLMSQALRK+T 
Sbjct: 61  TGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKITG 120

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ ++K+     GN
Sbjct: 121 RLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQTLKEGADSVGN 180

Query: 249 QTRVKVVKNKMASPFKQVEFDI 270
           +T+ K+VKNKMA PFK  EFDI
Sbjct: 181 RTKAKIVKNKMAPPFKVAEFDI 202


>gi|29652017|gb|AAO87671.1| RecA [Listeria monocytogenes]
          Length = 185

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 127/187 (67%), Positives = 157/187 (83%), Gaps = 2/187 (1%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH I
Sbjct: 1   KGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRSGAVD+
Sbjct: 59  AEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDM 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+R K+G
Sbjct: 119 LVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVG 178

Query: 209 VMFGSPE 215
           VMFG+PE
Sbjct: 179 VMFGNPE 185


>gi|289172384|emb|CAX48599.1| recA protein [Aeromonas bestiarum]
 gi|289172386|emb|CAX48600.1| recA protein [Aeromonas bestiarum]
          Length = 186

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 140/186 (75%), Positives = 163/186 (87%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSL LD+ALGIG  P GRIVEIYGPESSGKTTL L  IA++QK G  CAF+DA
Sbjct: 1   DIEAISTGSLSLDVALGIGALPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKVCAFIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEI
Sbjct: 61  EHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 121 EGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNAL 180

Query: 224 KFYSSV 229
           KFY+SV
Sbjct: 181 KFYASV 186


>gi|25991839|gb|AAN76960.1| RecA [Burkholderia vietnamiensis]
 gi|25991843|gb|AAN76962.1| RecA [Burkholderia vietnamiensis]
 gi|25991845|gb|AAN76963.1| RecA [Burkholderia vietnamiensis]
 gi|25991847|gb|AAN76964.1| RecA [Burkholderia vietnamiensis]
          Length = 169

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 125/170 (73%), Positives = 149/170 (87%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|262064668|gb|ACY07568.1| recombinase A [Rhizobium sp. LCS0411]
          Length = 170

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 132/171 (77%), Positives = 154/171 (90%), Gaps = 1/171 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI+R +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKT
Sbjct: 1   QIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TLAL TIA++QK GG CA VDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LV
Sbjct: 60  TLALQTIAEAQKKGGICAXVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           RSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQ  RKL +SIS 
Sbjct: 120 RSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQVXRKLXASISN 170


>gi|25991773|gb|AAN76927.1| RecA [Burkholderia cepacia]
          Length = 169

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 125/170 (73%), Positives = 148/170 (87%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GDATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|307343408|emb|CBJ18145.1| recombinase A [Micromonospora sp. CR21]
          Length = 184

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 132/184 (71%), Positives = 157/184 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHAL
Sbjct: 1   IPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVRL 231
           SVRL
Sbjct: 181 SVRL 184


>gi|160947818|gb|ABX54718.1| RecA protein [Sinorhizobium meliloti]
          Length = 168

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 129/162 (79%), Positives = 146/162 (90%), Gaps = 1/162 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDKSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG P
Sbjct: 4   EDKSVDKSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLP 62

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 63  KGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLIS 122

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           QPDTGEQALEITD LVRSGA+DI+VIDSVAAL PRAEI+G+M
Sbjct: 123 QPDTGEQALEITDTLVRSGAIDILVIDSVAALVPRAEIDGEM 164


>gi|25991779|gb|AAN76930.1| RecA [Burkholderia cepacia]
 gi|25991789|gb|AAN76935.1| RecA [Burkholderia cepacia]
 gi|25991807|gb|AAN76944.1| RecA [Burkholderia cepacia]
 gi|25991823|gb|AAN76952.1| RecA [Burkholderia cepacia]
 gi|25991829|gb|AAN76955.1| RecA [Burkholderia cepacia]
          Length = 169

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 125/170 (73%), Positives = 148/170 (87%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|25991775|gb|AAN76928.1| RecA [Burkholderia cepacia]
 gi|25991781|gb|AAN76931.1| RecA [Burkholderia cepacia]
 gi|25991811|gb|AAN76946.1| RecA [Burkholderia cepacia]
 gi|25991827|gb|AAN76954.1| RecA [Burkholderia cepacia]
 gi|25991855|gb|AAN76968.1| RecA [Burkholderia cepacia]
          Length = 169

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 125/170 (73%), Positives = 148/170 (87%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|189016830|gb|ACD70382.1| recombinase protein A [Rhizobium sp. CCBAU 03301]
          Length = 159

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 128/157 (81%), Positives = 144/157 (91%), Gaps = 1/157 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 4   VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 63  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+
Sbjct: 123 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGE 159


>gi|25991813|gb|AAN76947.1| RecA [Burkholderia cenocepacia]
 gi|25991849|gb|AAN76965.1| RecA [Burkholderia cepacia]
 gi|25991859|gb|AAN76970.1| RecA [Burkholderia cepacia]
          Length = 169

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 125/170 (73%), Positives = 148/170 (87%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|33087853|gb|AAP93057.1| recombination protein A [Yersinia mollaretii ATCC 43969]
          Length = 174

 Score =  190 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 117/176 (66%), Positives = 144/176 (81%), Gaps = 2/176 (1%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQ 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAV
Sbjct: 59  VIAAAQRAGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAV 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           D+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ
Sbjct: 119 DVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQ 174


>gi|189016812|gb|ACD70373.1| recombinase protein A [Rhizobium alkalisoli]
          Length = 159

 Score =  190 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 130/156 (83%), Positives = 143/156 (91%), Gaps = 1/156 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKALEAALSQI+R +GKG+IM+LGS  +I E IE VS+GSL LDIALGIGG PKGRI
Sbjct: 5   VDKSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRI 63

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 64  VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 123

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG
Sbjct: 124 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEG 159


>gi|25991873|gb|AAN76977.1| RecA [Burkholderia cepacia]
          Length = 169

 Score =  190 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 125/170 (73%), Positives = 148/170 (87%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|6694802|gb|AAF25387.1|AF214740_1 RecA protein [Arthrobacter sp. 'SMCC G970']
          Length = 197

 Score =  190 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 134/197 (68%), Positives = 164/197 (83%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD
Sbjct: 1   LGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDAEHALDPEYAAKLGVD 60

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
              LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIEGDMG+S  G+QARL
Sbjct: 61  TDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQARL 120

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ +
Sbjct: 121 MSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQT 180

Query: 239 IKDKDSITGNQTRVKVV 255
           + +     GN+T+ K+V
Sbjct: 181 LXEGADSVGNRTKAKIV 197


>gi|25991815|gb|AAN76948.1| RecA [Burkholderia cepacia]
 gi|25991837|gb|AAN76959.1| RecA [Burkholderia cepacia]
          Length = 169

 Score =  190 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 124/170 (72%), Positives = 147/170 (86%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G      E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-AEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|18072444|emb|CAC87606.1| recA protein [Azotobacter beijerinckii]
          Length = 209

 Score =  190 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 143/209 (68%), Positives = 181/209 (86%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA++QK G TCAFVDAE+ALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS 
Sbjct: 1   LSLIAEAQKQGATCAFVDAENALDPDYAAKLGVNVDDLLVSQPDTGEQALEITDMLVRSN 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           AVD+I++DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T +I  + C+++FINQ+R
Sbjct: 61  AVDVIIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNIKNANCLVIFINQIR 120

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++KD D + G++TRVKVVKNK+A PF+
Sbjct: 121 MKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKDSDEVVGSETRVKVVKNKVAPPFR 180

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVD 293
           Q EF I+YG+GI   GE+IDLGV+  +++
Sbjct: 181 QAEFQILYGKGIYRNGEIIDLGVQLGLLE 209


>gi|307343444|emb|CBJ18163.1| recombinase A [Micromonospora sp. SR4]
          Length = 183

 Score =  190 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 131/183 (71%), Positives = 155/183 (84%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDALLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALK Y+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYA 180

Query: 228 SVR 230
           SVR
Sbjct: 181 SVR 183


>gi|6694850|gb|AAF25435.1|AF214788_1 RecA protein [Arthrobacter histidinolovorans]
          Length = 192

 Score =  190 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 134/192 (69%), Positives = 161/192 (83%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD
Sbjct: 1   LGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPDYAAKLGVD 60

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
              LL+SQPDTGEQALEI DMLV SG++DIIVIDSVAAL PRAEIEG+MG+S  G+QARL
Sbjct: 61  TDALLVSQPDTGEQALEIMDMLVGSGSLDIIVIDSVAALVPRAEIEGEMGDSHVGLQARL 120

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ +
Sbjct: 121 MSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIQT 180

Query: 239 IKDKDSITGNQT 250
           +K+     GN+T
Sbjct: 181 LKEGADSVGNRT 192


>gi|307343147|emb|CBJ18103.1| recombinase A [Micromonospora coerulea]
          Length = 183

 Score =  190 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 132/183 (72%), Positives = 157/183 (85%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD
Sbjct: 1   PTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
             YA+ LGVD   LL+SQPDTGEQALEITDMLVRSGA+DI+VIDSVAAL PRAEIEG+MG
Sbjct: 61  PDYAKALGVDTDALLVSQPDTGEQALEITDMLVRSGAIDIVVIDSVAALVPRAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+S
Sbjct: 121 DSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYAS 180

Query: 229 VRL 231
           VRL
Sbjct: 181 VRL 183


>gi|112806724|emb|CAJ28012.1| recombination protein [Mesorhizobium huakuii]
 gi|112806726|emb|CAJ28013.1| recombination protein [Mesorhizobium loti]
 gi|116486987|emb|CAJ38866.1| recombination protein [Mesorhizobium sp. Cc3]
 gi|116486989|emb|CAJ38867.1| recombination protein [Mesorhizobium sp. Ca004]
          Length = 162

 Score =  190 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 127/163 (77%), Positives = 149/163 (91%), Gaps = 1/163 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           SQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGK
Sbjct: 1   SQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGK 59

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D L
Sbjct: 60  TTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTL 119

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           VRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQAL
Sbjct: 120 VRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQAL 162


>gi|299152211|gb|ADJ18195.1| recombinase A [Rhizobium hainanense]
          Length = 178

 Score =  190 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 143/179 (79%), Positives = 166/179 (92%), Gaps = 1/179 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           +M+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++
Sbjct: 1   VMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEA 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+
Sbjct: 60  QKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVV 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 120 DSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 178


>gi|112806720|emb|CAJ28010.1| recombination protein [Mesorhizobium amorphae]
          Length = 162

 Score =  190 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 128/163 (78%), Positives = 149/163 (91%), Gaps = 1/163 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           SQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGK
Sbjct: 1   SQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGK 59

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D L
Sbjct: 60  TTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTL 119

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           VRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQAL
Sbjct: 120 VRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQAL 162


>gi|58697768|ref|ZP_00372879.1| recA protein [Wolbachia endosymbiont of Drosophila simulans]
 gi|58535726|gb|EAL59602.1| recA protein [Wolbachia endosymbiont of Drosophila simulans]
          Length = 170

 Score =  190 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 112/172 (65%), Positives = 137/172 (79%), Gaps = 2/172 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M    E    DK KAL+ A+SQI++ +GKGAIM+L  + +  E I+ +S+GS+ LD ALG
Sbjct: 1   MASNPEERNSDKQKALDNAISQIEKAFGKGAIMKL--KQNPVEKIDTISTGSIALDSALG 58

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG PKGRI+EI+GPESSGKTTLALH IA++QK GG+CAF+DAEHALD +YARKLGV   
Sbjct: 59  VGGLPKGRIIEIFGPESSGKTTLALHVIAEAQKKGGSCAFIDAEHALDVLYARKLGVSTD 118

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           +L+ISQPDTGEQAL I + LV SGAVD+IV DSVAALTPRAEIEGDMG+   
Sbjct: 119 DLVISQPDTGEQALHIVEYLVCSGAVDVIVNDSVAALTPRAEIEGDMGDQHM 170


>gi|115498189|gb|ABI98674.1| RecA [Bradyrhizobium sp. CCBAU 23174]
          Length = 183

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 131/184 (71%), Positives = 161/184 (87%), Gaps = 1/184 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG        +E +SS SLGLDIALG+GG PKGR+VEIYGPESSGKTTLAL 
Sbjct: 1   FGKGSVMKLGKNDRSM-DVETISSRSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALD 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSHTMVIFINQIRMK 179

Query: 207 IGVM 210
           IGVM
Sbjct: 180 IGVM 183


>gi|16565166|gb|AAL26116.1|AF311560_1 recombinase A [Vibrio vulnificus]
          Length = 181

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 121/183 (66%), Positives = 152/183 (83%), Gaps = 2/183 (1%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDQLLVSQPDTGEQALEICDALARSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IV+DSVAALT +AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 VIVVDSVAALTRKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178

Query: 208 GVM 210
           GV 
Sbjct: 179 GVK 181


>gi|227183999|gb|ACP20118.1| RecA [Bradyrhizobium sp. ORS305]
          Length = 174

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 128/175 (73%), Positives = 154/175 (88%), Gaps = 1/175 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG++M+LG        IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTT
Sbjct: 1   IERQFGKGSVMKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVR
Sbjct: 60  LALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           SGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 SGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 174


>gi|307343137|emb|CBJ18098.1| recombinase A [Micromonospora carbonacea]
 gi|307343340|emb|CBJ18111.1| recombinase A [Micromonospora halophytica]
          Length = 183

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 131/183 (71%), Positives = 155/183 (84%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDALLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALK Y+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYA 180

Query: 228 SVR 230
           SVR
Sbjct: 181 SVR 183


>gi|25991861|gb|AAN76971.1| RecA [Burkholderia cepacia]
          Length = 169

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 126/170 (74%), Positives = 148/170 (87%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|227183993|gb|ACP20115.1| RecA [Bradyrhizobium sp. ORS301]
 gi|227184023|gb|ACP20130.1| RecA [Bradyrhizobium sp. ORS354]
          Length = 174

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 128/175 (73%), Positives = 155/175 (88%), Gaps = 1/175 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG++M+LG +      IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTT
Sbjct: 1   IERQFGKGSVMKLG-KSDRSMDIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVR
Sbjct: 60  LALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           SGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 SGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 174


>gi|213950704|gb|ACJ54597.1| recombination protein A [Rhizobium sp. CCBAU 03115]
          Length = 176

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 140/174 (80%), Positives = 158/174 (90%), Gaps = 1/174 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TI
Sbjct: 3   KGSIMKLGGKDSIVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTI 61

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 62  AEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDV 121

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           +VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S C++ F N 
Sbjct: 122 LVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNCMVFFFNH 175


>gi|117675783|emb|CAL69162.1| recombinase A [Rathayibacter iranicus]
          Length = 206

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 145/206 (70%), Positives = 171/206 (83%)

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTL LH IA +Q+ GG  AF+DAEHALD  YA+KLGVD+ +LL+SQPDTGEQALEI D
Sbjct: 1   GKTTLTLHAIANAQRNGGIAAFIDAEHALDPEYAKKLGVDIDSLLVSQPDTGEQALEIAD 60

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           MLVRSG++D++VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  ++ +   ++
Sbjct: 61  MLVRSGSIDLVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNTTNTTMI 120

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNK
Sbjct: 121 FINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNK 180

Query: 259 MASPFKQVEFDIMYGEGISFFGELID 284
           MA PFKQ EFDI+YG GIS  G LID
Sbjct: 181 MAPPFKQAEFDILYGIGISREGSLID 206


>gi|297523467|emb|CBH31141.1| recombination protein A [Mesorhizobium sp. LPYR1]
          Length = 168

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 131/169 (77%), Positives = 154/169 (91%), Gaps = 1/169 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           +R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GR +EIYGPESSGKTTL
Sbjct: 1   ERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRXIEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRS
Sbjct: 60  ALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           GA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISR
Sbjct: 120 GAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISR 168


>gi|160947820|gb|ABX54719.1| RecA protein [Phyllobacterium sp. CCBAU 13011]
          Length = 158

 Score =  189 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 121/156 (77%), Positives = 138/156 (88%), Gaps = 1/156 (0%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E   VDK+KAL+AALSQI+R +GKG+IM+LG    + E IE V +GSL LDIALG+GG P
Sbjct: 4   EDKSVDKTKALDAALSQIERAFGKGSIMRLGRNEQVVE-IETVPTGSLSLDIALGVGGLP 62

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS
Sbjct: 63  KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 122

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRA
Sbjct: 123 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRA 158


>gi|227183997|gb|ACP20117.1| RecA [Bradyrhizobium sp. ORS304]
 gi|227184003|gb|ACP20120.1| RecA [Bradyrhizobium sp. ORS309]
 gi|227184027|gb|ACP20132.1| RecA [Bradyrhizobium sp. ORS358]
          Length = 174

 Score =  189 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 127/175 (72%), Positives = 153/175 (87%), Gaps = 1/175 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG++M+LG        +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTT
Sbjct: 1   IERQFGKGSVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVR
Sbjct: 60  LALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           SGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 SGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 174


>gi|25808159|gb|AAN74144.1| RecA [Helicobacter pylori]
          Length = 200

 Score =  189 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 135/200 (67%), Positives = 168/200 (84%), Gaps = 1/200 (0%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           GLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA+
Sbjct: 1   GLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAK 60

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
           +LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G
Sbjct: 61  RLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVG 120

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLD 232
           +QARLMS ALRK+T  + +    LVFINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+D
Sbjct: 121 LQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMMGYGSPETTTGGNALKFYASVRID 180

Query: 233 IRRVGSIKDKDSITGNQTRV 252
           IRR+ ++K  +   GN+ + 
Sbjct: 181 IRRIAALKQNEQHIGNRAKA 200


>gi|307343360|emb|CBJ18121.1| recombinase A [Micromonospora sagamiensis]
          Length = 183

 Score =  189 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 130/183 (71%), Positives = 155/183 (84%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDALLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALK Y+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYA 180

Query: 228 SVR 230
           SVR
Sbjct: 181 SVR 183


>gi|29652060|gb|AAO87692.1| RecA [Listeria monocytogenes]
 gi|29652146|gb|AAO87734.1| RecA [Listeria monocytogenes]
          Length = 174

 Score =  189 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 116/176 (65%), Positives = 146/176 (82%), Gaps = 2/176 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAI 174


>gi|118185918|gb|ABK76572.1| RecA [Bacillus coahuilensis m4-4]
          Length = 177

 Score =  189 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 120/178 (67%), Positives = 149/178 (83%), Gaps = 2/178 (1%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           + AL QI++ +GKG+IM+LG Q      I  +SSGS+ LD ALG+GG+P+GRIVEIYGPE
Sbjct: 1   DMALKQIEKQFGKGSIMKLGEQQD--RKISTISSGSVTLDTALGVGGYPRGRIVEIYGPE 58

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ALH IA+ Q  GG  AF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI
Sbjct: 59  SSGKTTVALHAIAEVQAQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEI 118

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
            + LVRSGAVDI+VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I++SK
Sbjct: 119 AEALVRSGAVDILVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAINKSK 176


>gi|307343159|emb|CBJ18109.1| recombinase A [Micromonospora endolithica]
          Length = 183

 Score =  189 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 132/183 (72%), Positives = 157/183 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +++GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHAL
Sbjct: 1   ITTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDALLVSQPDTGEQALEIVDMLVRSGAIDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVR 230
           SVR
Sbjct: 181 SVR 183


>gi|227184019|gb|ACP20128.1| RecA [Bradyrhizobium sp. ORS336]
          Length = 174

 Score =  189 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 126/175 (72%), Positives = 153/175 (87%), Gaps = 1/175 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG++M+LG        +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTT
Sbjct: 1   IERQFGKGSVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVR
Sbjct: 60  LALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIXELLISQPDTGEQALEICDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           SGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 SGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 174


>gi|25991865|gb|AAN76973.1| RecA [Burkholderia cenocepacia]
 gi|25991867|gb|AAN76974.1| RecA [Burkholderia cenocepacia]
          Length = 169

 Score =  189 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 124/170 (72%), Positives = 147/170 (86%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL  AL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAVALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|25991803|gb|AAN76942.1| RecA [Burkholderia cepacia]
 gi|25991809|gb|AAN76945.1| RecA [Burkholderia cepacia]
 gi|25991833|gb|AAN76957.1| RecA [Burkholderia cepacia]
          Length = 169

 Score =  189 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 125/170 (73%), Positives = 148/170 (87%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|300813945|ref|ZP_07094247.1| RecA protein [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511944|gb|EFK39142.1| RecA protein [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 201

 Score =  189 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 107/197 (54%), Positives = 147/197 (74%)

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL P+ EI+G+MG++  G+QARLMSQALRKLT +I++SK  ++FINQ+R K+GV
Sbjct: 1   VIDSVAALVPKTEIDGEMGQATIGLQARLMSQALRKLTGAINKSKAAVIFINQLREKVGV 60

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           ++G+PETTTGG ALKFYS++RLD+RR+  IK  DS  G++ RVKVVKNK+A PFK+ E D
Sbjct: 61  IYGNPETTTGGRALKFYSTIRLDVRRIEIIKKGDSPIGSRVRVKVVKNKVAPPFKEAEVD 120

Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329
           IMYG GIS  G ++D+     IV K+G+W+S+  ++LGQGRE SK FL  N  + + IE+
Sbjct: 121 IMYGTGISKTGNILDVAADMGIVKKAGSWYSYNDEKLGQGREKSKDFLDSNPNLLKEIEN 180

Query: 330 LLRQNAGLVADSLLQEP 346
            +R      +D +  + 
Sbjct: 181 KVRDTLKDDSDDISVKE 197


>gi|25991857|gb|AAN76969.1| RecA [Burkholderia cenocepacia]
 gi|25991877|gb|AAN76979.1| RecA [Burkholderia cenocepacia]
          Length = 169

 Score =  189 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 125/170 (73%), Positives = 148/170 (87%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|213950708|gb|ACJ54599.1| recombination protein A [Sinorhizobium fredii]
          Length = 174

 Score =  189 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 140/173 (80%), Positives = 156/173 (90%), Gaps = 1/173 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TI
Sbjct: 3   KGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTI 61

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 62  AEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDV 121

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           +V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C   F N
Sbjct: 122 LVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNCHCGFFN 174


>gi|25991795|gb|AAN76938.1| RecA [Burkholderia cenocepacia]
 gi|25991797|gb|AAN76939.1| RecA [Burkholderia cenocepacia]
 gi|25991799|gb|AAN76940.1| RecA [Burkholderia cenocepacia]
 gi|25991819|gb|AAN76950.1| RecA [Burkholderia cenocepacia]
 gi|25991831|gb|AAN76956.1| RecA [Burkholderia cenocepacia]
 gi|25991841|gb|AAN76961.1| RecA [Burkholderia cenocepacia]
 gi|25991851|gb|AAN76966.1| RecA [Burkholderia cepacia]
 gi|25991853|gb|AAN76967.1| RecA [Burkholderia cepacia]
 gi|25991863|gb|AAN76972.1| RecA [Burkholderia cepacia]
 gi|25991869|gb|AAN76975.1| RecA [Burkholderia cenocepacia]
 gi|25991871|gb|AAN76976.1| RecA [Burkholderia cepacia]
 gi|25991875|gb|AAN76978.1| RecA [Burkholderia cenocepacia]
          Length = 169

 Score =  189 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 125/170 (73%), Positives = 148/170 (87%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|289172376|emb|CAX48595.1| recA protein [Aeromonas popoffii]
          Length = 186

 Score =  189 bits (479), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 139/186 (74%), Positives = 163/186 (87%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE + +GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L  IA++QK G  C+F+DA
Sbjct: 1   DIEAIFTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKVCSFIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEI
Sbjct: 61  EHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 121 EGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNAL 180

Query: 224 KFYSSV 229
           KFY+SV
Sbjct: 181 KFYASV 186


>gi|25991787|gb|AAN76934.1| RecA [Burkholderia cepacia]
 gi|25991805|gb|AAN76943.1| RecA [Burkholderia cepacia]
 gi|25991879|gb|AAN76980.1| RecA [Burkholderia cepacia]
          Length = 169

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 125/170 (73%), Positives = 148/170 (87%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|118185922|gb|ABK76574.1| RecA [Bacillus marisflavi]
          Length = 173

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 118/175 (67%), Positives = 145/175 (82%), Gaps = 2/175 (1%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           AL QI++ +GKG+IM+LG +      I  V SGSL LD ALG+GG+P+GRIVE+YGPESS
Sbjct: 1   ALKQIEKQFGKGSIMKLGEKTD--REIVTVPSGSLALDAALGVGGYPRGRIVEVYGPESS 58

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTT+ALH IA+ Q  GG  AF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI +
Sbjct: 59  GKTTVALHAIAEVQAQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAE 118

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
            LVRSGAVD IVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I++S
Sbjct: 119 ALVRSGAVDAIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAINKS 173


>gi|16565250|gb|AAL26156.1| recombinase A [Vibrio diazotrophicus]
          Length = 181

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 122/183 (66%), Positives = 152/183 (83%), Gaps = 2/183 (1%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYARKLGV++  LL+SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPIYARKLGVNIDELLVSQPDTGEQALEICDALARSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ + INQ+RMKI
Sbjct: 119 VMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCICINQIRMKI 178

Query: 208 GVM 210
           GV 
Sbjct: 179 GVK 181


>gi|33087793|gb|AAP93027.1| recombination protein A [Yersinia bercovieri]
          Length = 180

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 123/182 (67%), Positives = 150/182 (82%), Gaps = 2/182 (1%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ+RMKI
Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQIRMKI 178

Query: 208 GV 209
           GV
Sbjct: 179 GV 180


>gi|160375112|gb|ABX38942.1| recombinase protein A [Mesorhizobium caraganae]
          Length = 148

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 116/149 (77%), Positives = 135/149 (90%), Gaps = 1/149 (0%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRIVEIY
Sbjct: 1   KALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIVEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQA
Sbjct: 60  GPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           LEI D LVRSGA+D++V+DSVAALTPRAE
Sbjct: 120 LEICDTLVRSGAIDVLVVDSVAALTPRAE 148


>gi|257070322|ref|YP_003162640.1| ORF30 [Pseudomonas putida]
 gi|256260334|gb|ACU65273.1| recombinase A [Pseudomonas putida]
          Length = 247

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 109/164 (66%), Positives = 136/164 (82%), Gaps = 2/164 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
              ++KAL+AAL QI++ +GKGA+M++G      + I  +S+GS+GLDIALGIGG PKGR
Sbjct: 2   NEQRNKALQAALGQIEKQFGKGAVMRMGEHER--QAIPAISTGSMGLDIALGIGGLPKGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEIYGPESSGKTTL L  IA++Q+ G TCAFVDAEHALD  YA KLGV++ +LL+SQPD
Sbjct: 60  IVEIYGPESSGKTTLTLSVIAEAQRQGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           TGEQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG++  
Sbjct: 120 TGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDAHV 163


>gi|25991791|gb|AAN76936.1| RecA [Burkholderia cenocepacia]
          Length = 169

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 124/170 (72%), Positives = 148/170 (87%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG++G+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGELGDSLPGLQARLMSQALR 169


>gi|307343364|emb|CBJ18123.1| recombinase A [Micromonospora viridifaciens]
          Length = 183

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 129/183 (70%), Positives = 155/183 (84%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + + S+ LD+ALG+GG P+GR++EIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHAL
Sbjct: 1   IPTSSIALDVALGVGGLPRGRVIEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDALLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNHTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVR 230
           SVR
Sbjct: 181 SVR 183


>gi|29652202|gb|AAO87762.1| RecA [Listeria monocytogenes]
          Length = 184

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 126/186 (67%), Positives = 156/186 (83%), Gaps = 2/186 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA
Sbjct: 1   GSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRSGAVD++
Sbjct: 59  EVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDML 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+R K+GV
Sbjct: 119 VIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVGV 178

Query: 210 MFGSPE 215
           MFG+PE
Sbjct: 179 MFGNPE 184


>gi|90568916|gb|ABD94352.1| RecA [Thermoanaerobacter mathranii subsp. alimentarius]
          Length = 176

 Score =  188 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 118/176 (67%), Positives = 145/176 (82%)

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI + LVRSGAVDIIVIDSVAAL P+AEI+G+MG+S  G+QARLMSQALRKL    S+S
Sbjct: 1   LEIAEALVRSGAVDIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKS 60

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
           K I+VFINQ+R K+G+MFG+PETT GG ALKFY+++RLD+R+V  IK  + I GN+TRVK
Sbjct: 61  KTIVVFINQLREKVGIMFGNPETTPGGRALKFYATIRLDVRKVDPIKQGNEIVGNRTRVK 120

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309
           VVKNK+A PFKQ EFDIMYGEGIS  G ++D+G    I++KSGAW+S+   RLGQG
Sbjct: 121 VVKNKVAPPFKQAEFDIMYGEGISREGSILDIGTSIDIIEKSGAWYSYGDIRLGQG 176


>gi|161367354|gb|ABX71082.1| RecA [Vibrio cholerae O1]
          Length = 194

 Score =  188 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 138/194 (71%), Positives = 170/194 (87%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  L
Sbjct: 1   GLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDEL 60

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           L+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA
Sbjct: 61  LVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQA 120

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           +RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ 
Sbjct: 121 MRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEG 180

Query: 243 DSITGNQTRVKVVK 256
           + + GN+TR+KVVK
Sbjct: 181 EEVVGNETRIKVVK 194


>gi|29652062|gb|AAO87693.1| RecA [Listeria monocytogenes]
          Length = 185

 Score =  188 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 126/186 (67%), Positives = 156/186 (83%), Gaps = 2/186 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA
Sbjct: 1   GSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRSGAVD++
Sbjct: 59  EVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDML 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+R K+GV
Sbjct: 119 VIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVGV 178

Query: 210 MFGSPE 215
           MFG+PE
Sbjct: 179 MFGNPE 184


>gi|112806728|emb|CAJ28014.1| recombination protein [Mesorhizobium plurifarium]
          Length = 162

 Score =  188 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 127/163 (77%), Positives = 148/163 (90%), Gaps = 1/163 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           SQI+R +GKG+IM+LG+     E IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGK
Sbjct: 1   SQIERAFGKGSIMRLGANEQAVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGK 59

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D L
Sbjct: 60  TTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTL 119

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           VRSGA+D++V+DSVAALTPRAEIEG+MG++LPG+QARLMSQAL
Sbjct: 120 VRSGAIDVLVVDSVAALTPRAEIEGEMGDALPGLQARLMSQAL 162


>gi|29652027|gb|AAO87676.1| RecA [Listeria monocytogenes]
          Length = 173

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 116/175 (66%), Positives = 145/175 (82%), Gaps = 2/175 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +ALH IA+ Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVR
Sbjct: 59  VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           SGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I 
Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIA 173


>gi|262064670|gb|ACY07569.1| recombinase A [Rhizobium leguminosarum]
          Length = 169

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 133/169 (78%), Positives = 154/169 (91%), Gaps = 1/169 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI   +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+G I+EIYGPESSGKT
Sbjct: 1   QIDGSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGXIIEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LV
Sbjct: 60  TLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           RSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SI
Sbjct: 120 RSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASI 168


>gi|215446988|ref|ZP_03433740.1| recombinase A [Mycobacterium tuberculosis T85]
 gi|289758864|ref|ZP_06518242.1| recombinase A [Mycobacterium tuberculosis T85]
 gi|289714428|gb|EFD78440.1| recombinase A [Mycobacterium tuberculosis T85]
          Length = 729

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 143/241 (59%), Positives = 180/241 (74%), Gaps = 12/241 (4%)

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPD
Sbjct: 1   MIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPD 60

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S  G+QARLMSQALRK+T 
Sbjct: 61  TGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTG 120

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +++ S    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD  +  GN
Sbjct: 121 ALNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGN 180

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV--DKSG--------AW 298
           +TRVKVVKNK  +   +  FD + G       +++D      +V   K G        +W
Sbjct: 181 RTRVKVVKNKCLAEGTR-IFDPVTGT-THRIEDVVDGRKPIHVVAAAKDGTLHARPVVSW 238

Query: 299 F 299
           F
Sbjct: 239 F 239



 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/86 (50%), Positives = 65/86 (75%)

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VV +  + PFKQ EFDI+YG+GIS  G LID+GV   ++ KSGAWF+++G++LGQG+EN+
Sbjct: 626 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENA 685

Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339
           + FL EN ++A+ IE  +++  G+ A
Sbjct: 686 RNFLVENADVADEIEKKIKEKLGIGA 711


>gi|262064666|gb|ACY07567.1| recombinase A [Rhizobium leguminosarum]
          Length = 165

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 132/166 (79%), Positives = 152/166 (91%), Gaps = 1/166 (0%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI   +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKT
Sbjct: 1   QIDGSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKT 59

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LV
Sbjct: 60  TLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLV 119

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           RSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT
Sbjct: 120 RSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLT 165


>gi|307343382|emb|CBJ18132.1| recombinase A [Micromonospora sp. GUI19]
          Length = 183

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 132/183 (72%), Positives = 157/183 (85%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH++A +Q+ GG  AF+DAEHALD
Sbjct: 1   PTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHSVASAQRLGGIAAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
             YA+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG
Sbjct: 61  PEYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+S
Sbjct: 121 DSHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYAS 180

Query: 229 VRL 231
           VRL
Sbjct: 181 VRL 183


>gi|89143245|emb|CAJ57517.1| recombinase A [Microbacterium foliorum]
          Length = 197

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 140/196 (71%), Positives = 164/196 (83%)

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL LH IA +Q+ GG  AF+DAEHALD  YA KLGVD+  LL+SQPDTGEQALEI 
Sbjct: 1   SGKTTLTLHAIANAQRAGGIAAFIDAEHALDPDYAAKLGVDIDALLVSQPDTGEQALEIA 60

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  ++++   +
Sbjct: 61  DMLVRSGAIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTM 120

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           +FINQ+R KIGV FGSPETT GG ALKFY+SVR+DIRR+ ++KD     GN+TRVKVVKN
Sbjct: 121 IFINQLREKIGVFFGSPETTAGGKALKFYASVRMDIRRIETLKDGTDAVGNRTRVKVVKN 180

Query: 258 KMASPFKQVEFDIMYG 273
           KMA PFKQ EFDI+YG
Sbjct: 181 KMAPPFKQAEFDILYG 196


>gi|180050821|gb|ACB87024.1| RecA [Bacteriovorax sp. SJ]
          Length = 171

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 118/172 (68%), Positives = 144/172 (83%), Gaps = 1/172 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL+ AL+ I++ +GKGAIM+L       E +  +S+G LGLD+ALG+GG P+GRI+E+YG
Sbjct: 1   ALDLALATIEKQFGKGAIMKL-DSEKKLEKVPAISTGCLGLDLALGVGGIPQGRIIEVYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL LH  A+ QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+GEQAL
Sbjct: 60  PESSGKTTLTLHAAAECQKAGGTVAFIDAEHALDTYYAEKLGVDVPNTLISQPDSGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           EI DMLVRSGAVD++++DSVAALTPRAE+EGDMG+S  G+QARLMSQALRKL
Sbjct: 120 EIADMLVRSGAVDLLIVDSVAALTPRAELEGDMGDSHMGLQARLMSQALRKL 171


>gi|29651967|gb|AAO87646.1| RecA [Listeria monocytogenes]
          Length = 183

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 125/185 (67%), Positives = 155/185 (83%), Gaps = 2/185 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA
Sbjct: 1   GSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRSGAVD++
Sbjct: 59  EVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDML 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+R K+GV
Sbjct: 119 VIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVGV 178

Query: 210 MFGSP 214
           MFG+P
Sbjct: 179 MFGNP 183


>gi|307343440|emb|CBJ18161.1| recombinase A [Micromonospora sp. SR1]
          Length = 183

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 130/183 (71%), Positives = 155/183 (84%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHAL
Sbjct: 1   IPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALK Y+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYA 180

Query: 228 SVR 230
           SVR
Sbjct: 181 SVR 183


>gi|209571811|gb|ACI62758.1| recombinase A [Bradyrhizobium yuanmingense]
          Length = 177

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 132/178 (74%), Positives = 158/178 (88%), Gaps = 1/178 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G++M+LG        IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A
Sbjct: 1   GSVMKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           ++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++
Sbjct: 60  EAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVL 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 120 VVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 177


>gi|1172878|sp|Q08784|RECA_ACEAC RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|4261615|gb|AAD13915.1|S60630_1 Unknown [Acetobacter aceti]
 gi|602761|dbj|BAA02479.1| RecA protein [Acetobacter aceti]
          Length = 182

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 143/182 (78%), Positives = 166/182 (91%)

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           + NLLISQPD GEQALEI D LVRSGAVD++V+DSVAAL PRAE+EGDMG+S  G+ ARL
Sbjct: 1   VDNLLISQPDAGEQALEIADTLVRSGAVDVLVVDSVAALVPRAELEGDMGDSHVGLHARL 60

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRKLT +++RS  +++F+NQ+R+KIGVMFG+PETTTGGNALKFYSSVR+DIRR+GS
Sbjct: 61  MSQALRKLTGTVARSNTLMIFLNQIRLKIGVMFGNPETTTGGNALKFYSSVRMDIRRIGS 120

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           IKDKD +TGNQTRVKVVKNKMA PF+QVEFDIMYGEGIS  GELIDLGVKA +V+KSGAW
Sbjct: 121 IKDKDEVTGNQTRVKVVKNKMAPPFRQVEFDIMYGEGISKVGELIDLGVKAGVVEKSGAW 180

Query: 299 FS 300
           FS
Sbjct: 181 FS 182


>gi|307343344|emb|CBJ18113.1| recombinase A [Micromonospora matsumotoense]
          Length = 184

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 132/184 (71%), Positives = 157/184 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +++ S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHAL
Sbjct: 1   ITTRSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPDYAKALGVDTDALLVSQPDTGEQALEIVDMLVRSGAIDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180

Query: 228 SVRL 231
           SVRL
Sbjct: 181 SVRL 184


>gi|25991821|gb|AAN76951.1| RecA [Burkholderia cenocepacia]
          Length = 169

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 124/170 (72%), Positives = 147/170 (86%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL  AL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAPALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|225350253|gb|ACN88011.1| RecA [Vibrio sp. SG219]
 gi|225350255|gb|ACN88012.1| RecA [Vibrio sp. SG189]
 gi|225350257|gb|ACN88013.1| RecA [Vibrio sp. 7-SG326]
 gi|225350259|gb|ACN88014.1| RecA [Vibrio sp. 7-SG291]
 gi|225350261|gb|ACN88015.1| RecA [Vibrio sp. AF23]
 gi|225350263|gb|ACN88016.1| RecA [Vibrio sp. AF2]
 gi|225350265|gb|ACN88017.1| RecA [Vibrio sp. 7-SG81]
 gi|225350267|gb|ACN88018.1| RecA [Vibrio sp. 7-SG165]
 gi|225350269|gb|ACN88019.1| RecA [Vibrio sp. J-C2-15]
 gi|225350271|gb|ACN88020.1| RecA [Vibrio sp. 7-SG204]
 gi|225350273|gb|ACN88021.1| RecA [Vibrio sp. SG364]
 gi|225350275|gb|ACN88022.1| RecA [Vibrio sp. J-M1-23]
          Length = 201

 Score =  187 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 140/201 (69%), Positives = 175/201 (87%)

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQA
Sbjct: 1   GPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQA 60

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S
Sbjct: 61  LEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQS 120

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+K
Sbjct: 121 NCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIK 180

Query: 254 VVKNKMASPFKQVEFDIMYGE 274
           VVKNK+A+PFK+    IMYG+
Sbjct: 181 VVKNKIAAPFKEANTQIMYGQ 201


>gi|112806722|emb|CAJ28011.1| recombination protein [Mesorhizobium chacoense]
          Length = 162

 Score =  187 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 127/163 (77%), Positives = 149/163 (91%), Gaps = 1/163 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           SQI+R +GKG+IM+LG+   + E I  VS+GSLGLDIALG+GG P+GRI+EIYGPESSGK
Sbjct: 1   SQIERAFGKGSIMRLGANEQVVE-IGTVSTGSLGLDIALGVGGLPRGRIIEIYGPESSGK 59

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D L
Sbjct: 60  TTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTL 119

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           VRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQAL
Sbjct: 120 VRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQAL 162


>gi|33087869|gb|AAP93065.1| recombination protein A [Yersinia rohdei]
          Length = 173

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 116/175 (66%), Positives = 143/175 (81%), Gaps = 2/175 (1%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQ 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAV
Sbjct: 59  VIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAV 118

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           D+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FIN
Sbjct: 119 DVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFIN 173


>gi|68635342|emb|CAF21743.1| recombinase A [Lactobacillus algidus]
          Length = 187

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 127/187 (67%), Positives = 157/187 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I+V S+G L LD ALG+GGFPKGRI+EIYGPESSGKTT+ALH  A+ QK GGT A++DA
Sbjct: 1   KIDVNSTGILSLDYALGVGGFPKGRIIEIYGPESSGKTTIALHATAEVQKNGGTVAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+A+D  YA  LGVD+  LL+SQPDTGEQ LEI D LV SGAVD++VIDSVAAL PRAEI
Sbjct: 61  ENAMDPAYATALGVDIDGLLLSQPDTGEQGLEIADALVSSGAVDLVVIDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG++  G+QAR+MSQALRKL  SI++++  ++FINQ+R K+GVMFGSPETT GG AL
Sbjct: 121 EGEMGDAHVGLQARMMSQALRKLAGSINKTRTAVIFINQLREKVGVMFGSPETTPGGRAL 180

Query: 224 KFYSSVR 230
           KFY+++R
Sbjct: 181 KFYATIR 187


>gi|296516858|emb|CBM35922.1| recombination protein A [Bradyrhizobium sp. CAH53]
          Length = 178

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 133/179 (74%), Positives = 160/179 (89%), Gaps = 1/179 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G++M+LG +      IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A
Sbjct: 1   GSVMKLG-KSDRSMDIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           ++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++
Sbjct: 60  EAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVL 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIG
Sbjct: 120 VVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIG 178


>gi|25991793|gb|AAN76937.1| RecA [Burkholderia cenocepacia]
          Length = 169

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 124/170 (72%), Positives = 148/170 (87%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           A+ AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   AVAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|307343378|emb|CBJ18130.1| recombinase A [Micromonospora sp. GUI14]
          Length = 183

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 130/183 (71%), Positives = 156/183 (85%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH++A +Q+ GG  AF+DAEHAL
Sbjct: 1   IPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHSVASAQRLGGIAAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALK Y+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYA 180

Query: 228 SVR 230
           SVR
Sbjct: 181 SVR 183


>gi|25991801|gb|AAN76941.1| RecA [Burkholderia cepacia]
          Length = 169

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 125/170 (73%), Positives = 148/170 (87%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   ALAAALAQIEKHFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|315021911|gb|ADT70823.1| recombinase A [Dickeya dadantii]
 gi|316936315|gb|ADU60206.1| recombinase A [Dickeya dadantii]
          Length = 192

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 138/192 (71%), Positives = 167/192 (86%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ N
Sbjct: 1   GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDN 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQ
Sbjct: 61  LLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+
Sbjct: 121 AMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKE 180

Query: 242 KDSITGNQTRVK 253
            + + G++TRVK
Sbjct: 181 GEEVVGSETRVK 192


>gi|112806730|emb|CAJ28015.1| recombination protein [Aminobacter aminovorans]
          Length = 162

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 128/163 (78%), Positives = 149/163 (91%), Gaps = 1/163 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           SQI+R +GKG+IM+LG+   + E I  VS+GSLGLDIALG+GG P+GRI+EIYGPESSGK
Sbjct: 1   SQIERAFGKGSIMRLGANEQVVE-IGTVSTGSLGLDIALGVGGLPRGRIIEIYGPESSGK 59

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D L
Sbjct: 60  TTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTL 119

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           VRSGA+D++V+DSVAALTPRAEIEG+MGESLPG+QARLMSQAL
Sbjct: 120 VRSGAIDVLVVDSVAALTPRAEIEGEMGESLPGLQARLMSQAL 162


>gi|290795163|gb|ADD64596.1| RecA recombinase [Vibrio splendidus]
          Length = 172

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 117/174 (67%), Positives = 145/174 (83%), Gaps = 2/174 (1%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQP+TGEQALEI D L RSGA+D
Sbjct: 59  IAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPNTGEQALEICDALARSGAID 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           ++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FIN
Sbjct: 119 VLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFIN 172


>gi|118767317|gb|ABL11494.1| RecA [Rhizobium sp. PEPSM12]
          Length = 180

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 144/181 (79%), Positives = 163/181 (90%), Gaps = 2/181 (1%)

Query: 15  ALEAALSQIQRVYGKGA-IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           ALEAALSQI+ V    A IM+LGS  ++ E IE +S+GSLGLDIALG+GG PKGRI+EIY
Sbjct: 1   ALEAALSQIEAVVSARARIMKLGSNENVIE-IETISTGSLGLDIALGVGGLPKGRIIEIY 59

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           GPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQA
Sbjct: 60  GPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQA 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 LEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 179

Query: 194 K 194
            
Sbjct: 180 N 180


>gi|307343386|emb|CBJ18134.1| recombinase A [Micromonospora sp. GUI27]
          Length = 182

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 130/182 (71%), Positives = 155/182 (85%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD
Sbjct: 1   PTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVASAQRAGGIAAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
             YA+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG
Sbjct: 61  PDYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+S
Sbjct: 121 DSHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYAS 180

Query: 229 VR 230
           VR
Sbjct: 181 VR 182


>gi|285920710|gb|ADC39688.1| recombinase A [Campylobacter coli]
 gi|285920712|gb|ADC39689.1| recombinase A [Campylobacter coli]
 gi|285920714|gb|ADC39690.1| recombinase A [Campylobacter coli]
 gi|285920716|gb|ADC39691.1| recombinase A [Campylobacter coli]
 gi|285920718|gb|ADC39692.1| recombinase A [Campylobacter coli]
 gi|285920720|gb|ADC39693.1| recombinase A [Campylobacter coli]
 gi|285920722|gb|ADC39694.1| recombinase A [Campylobacter coli]
 gi|285920724|gb|ADC39695.1| recombinase A [Campylobacter coli]
 gi|285920726|gb|ADC39696.1| recombinase A [Campylobacter coli]
 gi|285920728|gb|ADC39697.1| recombinase A [Campylobacter coli]
 gi|285920730|gb|ADC39698.1| recombinase A [Campylobacter coli]
 gi|285920734|gb|ADC39700.1| recombinase A [Campylobacter coli]
 gi|285920736|gb|ADC39701.1| recombinase A [Campylobacter coli]
 gi|285920738|gb|ADC39702.1| recombinase A [Campylobacter coli]
 gi|285920740|gb|ADC39703.1| recombinase A [Campylobacter coli]
 gi|285920742|gb|ADC39704.1| recombinase A [Campylobacter coli]
 gi|285920744|gb|ADC39705.1| recombinase A [Campylobacter coli]
 gi|285920750|gb|ADC39708.1| recombinase A [Campylobacter coli]
 gi|285920758|gb|ADC39712.1| recombinase A [Campylobacter coli]
 gi|285920768|gb|ADC39717.1| recombinase A [Campylobacter coli]
 gi|285920770|gb|ADC39718.1| recombinase A [Campylobacter coli]
 gi|285920772|gb|ADC39719.1| recombinase A [Campylobacter coli]
 gi|285920774|gb|ADC39720.1| recombinase A [Campylobacter coli]
 gi|285920776|gb|ADC39721.1| recombinase A [Campylobacter coli]
 gi|285920778|gb|ADC39722.1| recombinase A [Campylobacter coli]
 gi|285920780|gb|ADC39723.1| recombinase A [Campylobacter coli]
 gi|285920782|gb|ADC39724.1| recombinase A [Campylobacter coli]
 gi|285920784|gb|ADC39725.1| recombinase A [Campylobacter coli]
 gi|285920786|gb|ADC39726.1| recombinase A [Campylobacter coli]
 gi|285920788|gb|ADC39727.1| recombinase A [Campylobacter coli]
 gi|285920790|gb|ADC39728.1| recombinase A [Campylobacter coli]
 gi|285920792|gb|ADC39729.1| recombinase A [Campylobacter coli]
 gi|285920794|gb|ADC39730.1| recombinase A [Campylobacter coli]
 gi|285920796|gb|ADC39731.1| recombinase A [Campylobacter coli]
 gi|285920798|gb|ADC39732.1| recombinase A [Campylobacter coli]
 gi|285920800|gb|ADC39733.1| recombinase A [Campylobacter coli]
 gi|285920802|gb|ADC39734.1| recombinase A [Campylobacter coli]
 gi|285920804|gb|ADC39735.1| recombinase A [Campylobacter coli]
 gi|285920806|gb|ADC39736.1| recombinase A [Campylobacter coli]
 gi|285920808|gb|ADC39737.1| recombinase A [Campylobacter coli]
 gi|285920810|gb|ADC39738.1| recombinase A [Campylobacter coli]
 gi|285920812|gb|ADC39739.1| recombinase A [Campylobacter coli]
 gi|285920814|gb|ADC39740.1| recombinase A [Campylobacter coli]
 gi|285920816|gb|ADC39741.1| recombinase A [Campylobacter coli]
 gi|285920818|gb|ADC39742.1| recombinase A [Campylobacter coli]
 gi|285920820|gb|ADC39743.1| recombinase A [Campylobacter coli]
 gi|285920822|gb|ADC39744.1| recombinase A [Campylobacter coli]
 gi|285920824|gb|ADC39745.1| recombinase A [Campylobacter coli]
 gi|285920826|gb|ADC39746.1| recombinase A [Campylobacter coli]
 gi|285920828|gb|ADC39747.1| recombinase A [Campylobacter coli]
 gi|285920830|gb|ADC39748.1| recombinase A [Campylobacter coli]
 gi|285920832|gb|ADC39749.1| recombinase A [Campylobacter coli]
 gi|285920834|gb|ADC39750.1| recombinase A [Campylobacter coli]
 gi|285920842|gb|ADC39754.1| recombinase A [Campylobacter coli]
 gi|285920844|gb|ADC39755.1| recombinase A [Campylobacter coli]
 gi|285920846|gb|ADC39756.1| recombinase A [Campylobacter coli]
 gi|285920848|gb|ADC39757.1| recombinase A [Campylobacter coli]
 gi|285920850|gb|ADC39758.1| recombinase A [Campylobacter coli]
 gi|285920852|gb|ADC39759.1| recombinase A [Campylobacter coli]
 gi|285920854|gb|ADC39760.1| recombinase A [Campylobacter coli]
 gi|285920856|gb|ADC39761.1| recombinase A [Campylobacter coli]
 gi|285920858|gb|ADC39762.1| recombinase A [Campylobacter coli]
 gi|285920860|gb|ADC39763.1| recombinase A [Campylobacter coli]
 gi|285920862|gb|ADC39764.1| recombinase A [Campylobacter coli]
 gi|285920864|gb|ADC39765.1| recombinase A [Campylobacter coli]
 gi|285920866|gb|ADC39766.1| recombinase A [Campylobacter coli]
 gi|285920868|gb|ADC39767.1| recombinase A [Campylobacter coli]
 gi|285920870|gb|ADC39768.1| recombinase A [Campylobacter coli]
 gi|285920872|gb|ADC39769.1| recombinase A [Campylobacter coli]
 gi|285920874|gb|ADC39770.1| recombinase A [Campylobacter coli]
          Length = 205

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 133/194 (68%), Positives = 160/194 (82%), Gaps = 1/194 (0%)

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
           +ALGIGG PKGRI+EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD  YA+ LG
Sbjct: 1   LALGIGGIPKGRIIEIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLG 60

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           VD  NL ISQPD GEQALEI + + RSGA+D+IV+DSVAALTP+AEIEGDMG+   G+QA
Sbjct: 61  VDTDNLYISQPDFGEQALEIVETIARSGAIDLIVVDSVAALTPKAEIEGDMGDQHVGLQA 120

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRR 235
           RLMSQALRKLT  + +    ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R+
Sbjct: 121 RLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRK 180

Query: 236 VGSIKDKDSITGNQ 249
           V ++K  +   GN+
Sbjct: 181 VATLKQNEEPIGNR 194


>gi|213012322|gb|ACJ38727.1| recombination-repair protein [Photobacterium sp. R-13]
 gi|213012324|gb|ACJ38728.1| recombination-repair protein [Photobacterium sp. R-15]
          Length = 197

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 143/197 (72%), Positives = 172/197 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLEAIACAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMYG 273
           NK+A+PFKQ E  I+YG
Sbjct: 181 NKIAAPFKQAETQILYG 197


>gi|255689412|gb|ACU30054.1| RecA [Rhizobium borbori]
          Length = 171

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 141/172 (81%), Positives = 158/172 (91%), Gaps = 1/172 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  +I E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLALHTIA++Q
Sbjct: 1   MKLGSNENIVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALHTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD IYARKLGVDL NLLISQPDTGEQALEITD LVRSGAVD++V+D
Sbjct: 60  KKGGICAFVDAEHALDPIYARKLGVDLHNLLISQPDTGEQALEITDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           SVAALTPRAEI G+MGESLPG+QARLMSQALRKLT+SIS+S  +++FINQ+R
Sbjct: 120 SVAALTPRAEIGGEMGESLPGLQARLMSQALRKLTASISKSNTMVIFINQIR 171


>gi|33087785|gb|AAP93023.1| recombination protein A [Yersinia bercovieri ATCC 43970]
          Length = 175

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 118/177 (66%), Positives = 145/177 (81%), Gaps = 2/177 (1%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           +I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ+R
Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQIR 175


>gi|307343356|emb|CBJ18119.1| recombinase A [Micromonospora rifamycinica]
          Length = 181

 Score =  186 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 133/181 (73%), Positives = 156/181 (86%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHALD 
Sbjct: 1   TGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
            YA+ LGVD   LL+SQPDTGEQALEITDMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+
Sbjct: 61  DYAKALGVDTDALLVSQPDTGEQALEITDMLVRSGAIDIIVIDSVAALVPRAEIEGEMGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SV
Sbjct: 121 SHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASV 180

Query: 230 R 230
           R
Sbjct: 181 R 181


>gi|307343141|emb|CBJ18100.1| recombinase A [Micromonospora chersina]
          Length = 183

 Score =  186 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 129/183 (70%), Positives = 154/183 (84%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + + S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHAL
Sbjct: 1   IPTSSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDALLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALK Y+
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYA 180

Query: 228 SVR 230
           SVR
Sbjct: 181 SVR 183


>gi|307343446|emb|CBJ18164.1| recombinase A [Micromonospora sp. SR6]
          Length = 183

 Score =  186 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 133/183 (72%), Positives = 158/183 (86%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPDY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   LL+SQPDTGEQALEITDMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDALLVSQPDTGEQALEITDMLVRSGAIDIVVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
            G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRL
Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRL 180

Query: 232 DIR 234
           D+R
Sbjct: 181 DVR 183


>gi|285920732|gb|ADC39699.1| recombinase A [Campylobacter coli]
 gi|285920746|gb|ADC39706.1| recombinase A [Campylobacter coli]
 gi|285920748|gb|ADC39707.1| recombinase A [Campylobacter coli]
 gi|285920752|gb|ADC39709.1| recombinase A [Campylobacter coli]
 gi|285920754|gb|ADC39710.1| recombinase A [Campylobacter coli]
 gi|285920756|gb|ADC39711.1| recombinase A [Campylobacter coli]
 gi|285920760|gb|ADC39713.1| recombinase A [Campylobacter coli]
 gi|285920762|gb|ADC39714.1| recombinase A [Campylobacter coli]
 gi|285920764|gb|ADC39715.1| recombinase A [Campylobacter coli]
 gi|285920766|gb|ADC39716.1| recombinase A [Campylobacter coli]
          Length = 205

 Score =  186 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 131/194 (67%), Positives = 160/194 (82%), Gaps = 1/194 (0%)

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
           +ALGIGG PKGRI+EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD  YA+ LG
Sbjct: 1   LALGIGGIPKGRIIEIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLG 60

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           V+  +L +SQPD GEQALEI + + RSGAVD+IV+DSVAALTP+AEIEGDMG+   G+QA
Sbjct: 61  VNTDDLYVSQPDFGEQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGDQHVGLQA 120

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRR 235
           RLMSQALRKLT  + +    ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R+
Sbjct: 121 RLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRK 180

Query: 236 VGSIKDKDSITGNQ 249
           V ++K  +   GN+
Sbjct: 181 VATLKQNEEPIGNR 194


>gi|282952560|emb|CBI75457.1| DNA repair protein RecA [Pseudomonas grimontii]
 gi|282952564|emb|CBI75459.1| DNA repair protein RecA [Pseudomonas marginalis]
 gi|282952568|emb|CBI75461.1| DNA repair protein RecA [Pseudomonas tolaasii]
 gi|282952570|emb|CBI75462.1| DNA repair protein RecA [Pseudomonas veronii]
          Length = 200

 Score =  186 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 141/200 (70%), Positives = 172/200 (86%)

Query: 96  GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
            TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IV+DSVA
Sbjct: 1   ATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVA 60

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
           AL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFGSPE
Sbjct: 61  ALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPE 120

Query: 216 TTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275
           TTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+YG+G
Sbjct: 121 TTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQILYGKG 180

Query: 276 ISFFGELIDLGVKASIVDKS 295
           I   GE+IDLGV    V+KS
Sbjct: 181 IYLNGEMIDLGVLHGFVEKS 200


>gi|168805230|gb|ACA28697.1| recombinase protein A [Mesorhizobium septentrionale]
 gi|168805232|gb|ACA28698.1| recombinase protein A [Mesorhizobium amorphae]
          Length = 162

 Score =  186 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 124/160 (77%), Positives = 145/160 (90%), Gaps = 1/160 (0%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           VDKSKAL+AALSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI
Sbjct: 4   VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 62

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT
Sbjct: 63  VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 122

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           GEQALEI D LVRSGA+D++V+ SVAALTPRAEIEG+MG+
Sbjct: 123 GEQALEICDTLVRSGAIDVLVVVSVAALTPRAEIEGEMGD 162


>gi|217037961|gb|ACJ76443.1| RecA [Aliivibrio fischeri]
 gi|217037963|gb|ACJ76444.1| RecA [Aliivibrio fischeri]
 gi|217037965|gb|ACJ76445.1| RecA [Aliivibrio fischeri]
 gi|217037967|gb|ACJ76446.1| RecA [Aliivibrio fischeri]
 gi|217037969|gb|ACJ76447.1| RecA [Aliivibrio fischeri]
 gi|217037971|gb|ACJ76448.1| RecA [Aliivibrio fischeri]
 gi|217037973|gb|ACJ76449.1| RecA [Aliivibrio fischeri]
 gi|217037975|gb|ACJ76450.1| RecA [Aliivibrio fischeri]
 gi|217037977|gb|ACJ76451.1| RecA [Aliivibrio fischeri]
 gi|217037979|gb|ACJ76452.1| RecA [Aliivibrio fischeri]
 gi|217037981|gb|ACJ76453.1| RecA [Aliivibrio fischeri]
 gi|217037983|gb|ACJ76454.1| RecA [Aliivibrio fischeri]
 gi|217037985|gb|ACJ76455.1| RecA [Aliivibrio fischeri]
 gi|217037987|gb|ACJ76456.1| RecA [Aliivibrio fischeri]
 gi|217037989|gb|ACJ76457.1| RecA [Aliivibrio fischeri]
 gi|217037991|gb|ACJ76458.1| RecA [Aliivibrio fischeri]
 gi|217037993|gb|ACJ76459.1| RecA [Aliivibrio fischeri]
 gi|217037995|gb|ACJ76460.1| RecA [Aliivibrio fischeri]
 gi|217037997|gb|ACJ76461.1| RecA [Aliivibrio fischeri]
 gi|217037999|gb|ACJ76462.1| RecA [Aliivibrio fischeri]
 gi|217038001|gb|ACJ76463.1| RecA [Aliivibrio fischeri]
 gi|217038003|gb|ACJ76464.1| RecA [Aliivibrio fischeri]
 gi|217038005|gb|ACJ76465.1| RecA [Aliivibrio fischeri]
 gi|217038007|gb|ACJ76466.1| RecA [Aliivibrio fischeri]
          Length = 177

 Score =  186 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 120/179 (67%), Positives = 150/179 (83%), Gaps = 2/179 (1%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   ++   +E VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L  I
Sbjct: 1   KGSIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 119 MVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKI 177


>gi|291246105|gb|ADD85179.1| RecA [Borrelia recurrentis]
          Length = 212

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 137/212 (64%), Positives = 179/212 (84%), Gaps = 2/212 (0%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           + LD A+GIGG+P+GR+VEI+GPESSGKTTL L  IA+ QKTGG  AF+DAEHALD +YA
Sbjct: 1   ILLDEAIGIGGYPRGRVVEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAEHALDPVYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           R LGV++  L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAAL P+AEI+G+MG++  
Sbjct: 61  RALGVNINELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALMPQAEIDGEMGDTQI 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QARLMS+ALRK+T+ +S+S   ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL+
Sbjct: 121 GLQARLMSKALRKITAILSKSNACIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLE 180

Query: 233 IRRVGSI--KDKDSITGNQTRVKVVKNKMASP 262
           +R+V  +     D++ GN+ RVKVVKNK+A P
Sbjct: 181 VRKVEQVIGSSSDNVIGNKIRVKVVKNKVAPP 212


>gi|285920836|gb|ADC39751.1| recombinase A [Campylobacter coli]
 gi|285920838|gb|ADC39752.1| recombinase A [Campylobacter coli]
 gi|285920840|gb|ADC39753.1| recombinase A [Campylobacter coli]
          Length = 205

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 132/194 (68%), Positives = 159/194 (81%), Gaps = 1/194 (0%)

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
           +ALGIGG PKGRI+EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD  YA+ LG
Sbjct: 1   LALGIGGIPKGRIIEIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLG 60

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           VD  NL ISQPD GEQALEI + + RSGA+D+I +DSVAALTP+AEIEGDMG+   G+QA
Sbjct: 61  VDTDNLYISQPDFGEQALEIVETIARSGAIDLIAVDSVAALTPKAEIEGDMGDQHVGLQA 120

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRR 235
           RLMSQALRKLT  + +    ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R+
Sbjct: 121 RLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRK 180

Query: 236 VGSIKDKDSITGNQ 249
           V ++K  +   GN+
Sbjct: 181 VATLKQNEEPIGNR 194


>gi|25991777|gb|AAN76929.1| RecA [Burkholderia cepacia]
          Length = 169

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 123/170 (72%), Positives = 147/170 (86%), Gaps = 1/170 (0%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           A+ AAL+ I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYG
Sbjct: 1   AVAAALAHIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           PESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQAL
Sbjct: 60  PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169


>gi|307343368|emb|CBJ18125.1| recombinase A [Micromonospora sp. GUI2]
          Length = 182

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 130/182 (71%), Positives = 154/182 (84%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD
Sbjct: 1   PTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
             YA+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG
Sbjct: 61  PEYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALK Y+S
Sbjct: 121 DSHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYAS 180

Query: 229 VR 230
           VR
Sbjct: 181 VR 182


>gi|33087815|gb|AAP93038.1| recombination protein A [Yersinia frederiksenii]
          Length = 169

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 114/171 (66%), Positives = 140/171 (81%), Gaps = 2/171 (1%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 58

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L 
Sbjct: 59  TLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALT 118

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  
Sbjct: 119 RSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKN 169


>gi|323652538|gb|ADX98520.1| recombinase A [Burkholderia cepacia ATCC 25416]
          Length = 183

 Score =  185 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 142/183 (77%), Positives = 165/183 (90%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AE
Sbjct: 61  AEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           IEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNA
Sbjct: 121 IEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNA 180

Query: 223 LKF 225
           LKF
Sbjct: 181 LKF 183


>gi|32345038|gb|AAM93529.1| RecA protein [Rickettsia aeschlimannii]
          Length = 184

 Score =  185 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 142/184 (77%), Positives = 166/184 (90%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALGIGG PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  Y
Sbjct: 1   SLGLDIALGIGGVPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+KLGV++  L+ISQPDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++ 
Sbjct: 61  AKKLGVNIDELIISQPDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQ 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
              QARLMSQALRKLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+
Sbjct: 121 MASQARLMSQALRKLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRI 180

Query: 232 DIRR 235
           DIRR
Sbjct: 181 DIRR 184


>gi|213012372|gb|ACJ38752.1| recombination-repair protein [Photobacterium sp. R-89]
 gi|213012374|gb|ACJ38753.1| recombination-repair protein [Photobacterium sp. R-90]
          Length = 197

 Score =  185 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 142/197 (72%), Positives = 172/197 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLEAIACAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMYG 273
           NK+A+PFKQ E  I+YG
Sbjct: 181 NKVAAPFKQAETQILYG 197


>gi|325512847|gb|ADZ23612.1| RecA [Sinorhizobium fredii]
          Length = 175

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 144/176 (81%), Positives = 163/176 (92%), Gaps = 1/176 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           SVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIG
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 175


>gi|225008778|gb|ACN78937.1| RecA [Rhizobium sp. NTP02]
          Length = 168

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 134/168 (79%), Positives = 155/168 (92%), Gaps = 1/168 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL 
Sbjct: 2   FGKGPIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQ 60

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAV
Sbjct: 61  TIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAV 120

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S 
Sbjct: 121 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSN 168


>gi|33087883|gb|AAP93072.1| recombination protein A [Yersinia ruckeri]
          Length = 174

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 118/176 (67%), Positives = 144/176 (81%), Gaps = 2/176 (1%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKGAIM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGAIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           +I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ+
Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQI 174


>gi|117675785|emb|CAL69163.1| recombinase A [Rathayibacter tritici]
          Length = 204

 Score =  185 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 141/204 (69%), Positives = 167/204 (81%)

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
           H IA +Q+ GG  AF+DAEHALD  YA+KLGVD+ +LL+SQPDTGEQALEI DMLVRSG+
Sbjct: 1   HAIANAQRNGGIAAFIDAEHALDPEYAKKLGVDIDSLLVSQPDTGEQALEIADMLVRSGS 60

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT  ++ +   ++FINQ+R 
Sbjct: 61  IDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNTTNTTMIFINQLRE 120

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA PFK 
Sbjct: 121 KIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKMAPPFKH 180

Query: 266 VEFDIMYGEGISFFGELIDLGVKA 289
            EFDI+YG GIS  G LID GV+ 
Sbjct: 181 SEFDILYGIGISREGSLIDFGVEH 204


>gi|282952562|emb|CBI75458.1| DNA repair protein RecA [Pseudomonas lini]
 gi|282952566|emb|CBI75460.1| DNA repair protein RecA [Pseudomonas migulae]
          Length = 200

 Score =  185 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 142/200 (71%), Positives = 173/200 (86%)

Query: 96  GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
            TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DSVA
Sbjct: 1   ATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVA 60

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
           AL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFGSPE
Sbjct: 61  ALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPE 120

Query: 216 TTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275
           TTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+ASPF+Q EF I+YG+G
Sbjct: 121 TTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVASPFRQAEFQILYGKG 180

Query: 276 ISFFGELIDLGVKASIVDKS 295
           I   GE+IDLGV    V+KS
Sbjct: 181 IYLNGEMIDLGVLHGFVEKS 200


>gi|213950714|gb|ACJ54602.1| recombination protein A [Rhizobium fabae]
          Length = 169

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 133/167 (79%), Positives = 154/167 (92%), Gaps = 1/167 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TI
Sbjct: 4   KGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTI 62

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD+
Sbjct: 63  AEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDV 122

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           +V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S  
Sbjct: 123 LVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNT 169


>gi|307343372|emb|CBJ18127.1| recombinase A [Micromonospora sp. GUI8]
          Length = 181

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 130/181 (71%), Positives = 154/181 (85%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD
Sbjct: 1   PTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
             YA+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG
Sbjct: 61  PEYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+S
Sbjct: 121 DSHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYAS 180

Query: 229 V 229
           V
Sbjct: 181 V 181


>gi|307343442|emb|CBJ18162.1| recombinase A [Micromonospora sp. SR2]
          Length = 183

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 133/183 (72%), Positives = 158/183 (86%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH++A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHSVASAQRLGGIAAFIDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDAMLVSQPDTGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
            G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRL
Sbjct: 121 VGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRL 180

Query: 232 DIR 234
           D+R
Sbjct: 181 DVR 183


>gi|25808105|gb|AAN74117.1| RecA [Helicobacter pylori]
          Length = 196

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 129/196 (65%), Positives = 161/196 (82%), Gaps = 1/196 (0%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGV
Sbjct: 1   ALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGV 60

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           D +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QAR
Sbjct: 61  DTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQAR 120

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           LMS ALRK+T  + +    L+FINQ+RMKI    +GSPETTTGGNALKFY+SVR+DIRR+
Sbjct: 121 LMSHALRKITGVLHKMNTTLIFINQIRMKIGMTGYGSPETTTGGNALKFYASVRIDIRRI 180

Query: 237 GSIKDKDSITGNQTRV 252
            ++K  +   GN+ + 
Sbjct: 181 AALKQNEQHIGNRAKA 196


>gi|226328746|ref|ZP_03804264.1| hypothetical protein PROPEN_02646 [Proteus penneri ATCC 35198]
 gi|225201932|gb|EEG84286.1| hypothetical protein PROPEN_02646 [Proteus penneri ATCC 35198]
          Length = 182

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 103/157 (65%), Positives = 127/157 (80%), Gaps = 2/157 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LD+ALG GG P+GRIV
Sbjct: 22  NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--NVETISTGSLSLDVALGAGGLPRGRIV 79

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G  CAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 80  EIYGPESSGKTTLTLQVIAAAQREGKICAFIDAEHALDPIYAQKLGVDIDNLLCSQPDTG 139

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           EQALEI D L RSGAVD+IV+DSVAALTP+ +++  +
Sbjct: 140 EQALEICDALSRSGAVDVIVVDSVAALTPKQKLKVRL 176


>gi|29652070|gb|AAO87697.1| RecA [Listeria monocytogenes]
          Length = 183

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 125/184 (67%), Positives = 154/184 (83%), Gaps = 2/184 (1%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA+ 
Sbjct: 1   IMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEV 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRSGAVD++VI
Sbjct: 59  QAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLVI 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+R K+GVMF
Sbjct: 119 DSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVGVMF 178

Query: 212 GSPE 215
           G+PE
Sbjct: 179 GNPE 182


>gi|213012440|gb|ACJ38786.1| recombination-repair protein [Vibrio sinaloensis]
 gi|213012458|gb|ACJ38795.1| recombination-repair protein [Vibrio sinaloensis]
 gi|213012580|gb|ACJ38856.1| recombination-repair protein [Vibrio sinaloensis]
          Length = 197

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 142/197 (72%), Positives = 172/197 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMYG 273
           NK+A+PFKQ E  I+YG
Sbjct: 181 NKIAAPFKQAETQILYG 197


>gi|6694830|gb|AAF25415.1|AF214768_1 RecA protein [Arthrobacter sp. 'SMCC G982']
          Length = 196

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 134/195 (68%), Positives = 164/195 (84%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD   LL+
Sbjct: 1   PRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHALDPEYAAKLGVDTDALLV 60

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEIEGDMG+S  G+QARLMSQALR
Sbjct: 61  SQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIEGDMGDSHVGLQARLMSQALR 120

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           K+T  +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ ++K+   
Sbjct: 121 KITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQTLKEGAD 180

Query: 245 ITGNQTRVKVVKNKM 259
             GN+T+ K+VKNKM
Sbjct: 181 SVGNRTKAKIVKNKM 195


>gi|209163977|gb|ACI40696.1| RecA [Clostridium septicum]
 gi|209163979|gb|ACI40697.1| RecA [Clostridium septicum]
 gi|209163981|gb|ACI40698.1| RecA [Clostridium septicum]
 gi|209163983|gb|ACI40699.1| RecA [Clostridium septicum]
 gi|209163985|gb|ACI40700.1| RecA [Clostridium septicum]
 gi|209163987|gb|ACI40701.1| RecA [Clostridium septicum]
 gi|209163989|gb|ACI40702.1| RecA [Clostridium septicum]
 gi|209163991|gb|ACI40703.1| RecA [Clostridium septicum]
 gi|209163993|gb|ACI40704.1| RecA [Clostridium septicum]
 gi|209163995|gb|ACI40705.1| RecA [Clostridium septicum]
 gi|209163997|gb|ACI40706.1| RecA [Clostridium septicum]
 gi|209163999|gb|ACI40707.1| RecA [Clostridium septicum]
 gi|209164001|gb|ACI40708.1| RecA [Clostridium septicum]
 gi|209164003|gb|ACI40709.1| RecA [Clostridium septicum]
 gi|209164005|gb|ACI40710.1| RecA [Clostridium septicum]
 gi|209164007|gb|ACI40711.1| RecA [Clostridium septicum]
 gi|209164009|gb|ACI40712.1| RecA [Clostridium septicum]
 gi|209164011|gb|ACI40713.1| RecA [Clostridium septicum]
 gi|209164013|gb|ACI40714.1| RecA [Clostridium septicum]
 gi|209164015|gb|ACI40715.1| RecA [Clostridium septicum]
 gi|209164017|gb|ACI40716.1| RecA [Clostridium septicum]
 gi|209164019|gb|ACI40717.1| RecA [Clostridium septicum]
 gi|209164021|gb|ACI40718.1| RecA [Clostridium septicum]
 gi|209164023|gb|ACI40719.1| RecA [Clostridium septicum]
 gi|209164025|gb|ACI40720.1| RecA [Clostridium septicum]
 gi|209164027|gb|ACI40721.1| RecA [Clostridium septicum]
 gi|209164029|gb|ACI40722.1| RecA [Clostridium septicum]
 gi|209164031|gb|ACI40723.1| RecA [Clostridium septicum]
 gi|209164033|gb|ACI40724.1| RecA [Clostridium septicum]
 gi|209164035|gb|ACI40725.1| RecA [Clostridium septicum]
 gi|209164037|gb|ACI40726.1| RecA [Clostridium septicum]
 gi|209164039|gb|ACI40727.1| RecA [Clostridium septicum]
 gi|209164041|gb|ACI40728.1| RecA [Clostridium septicum]
 gi|209164043|gb|ACI40729.1| RecA [Clostridium septicum]
 gi|209164045|gb|ACI40730.1| RecA [Clostridium septicum]
 gi|209164047|gb|ACI40731.1| RecA [Clostridium septicum]
 gi|209164049|gb|ACI40732.1| RecA [Clostridium septicum]
 gi|209164051|gb|ACI40733.1| RecA [Clostridium septicum]
 gi|209164053|gb|ACI40734.1| RecA [Clostridium septicum]
 gi|209164055|gb|ACI40735.1| RecA [Clostridium septicum]
 gi|209164057|gb|ACI40736.1| RecA [Clostridium septicum]
 gi|209164059|gb|ACI40737.1| RecA [Clostridium septicum]
 gi|209164061|gb|ACI40738.1| RecA [Clostridium septicum]
 gi|209164063|gb|ACI40739.1| RecA [Clostridium septicum]
 gi|209164065|gb|ACI40740.1| RecA [Clostridium septicum]
 gi|209164067|gb|ACI40741.1| RecA [Clostridium septicum]
 gi|209164069|gb|ACI40742.1| RecA [Clostridium septicum]
 gi|209164071|gb|ACI40743.1| RecA [Clostridium septicum]
 gi|209164073|gb|ACI40744.1| RecA [Clostridium septicum]
 gi|209164075|gb|ACI40745.1| RecA [Clostridium septicum]
 gi|209164077|gb|ACI40746.1| RecA [Clostridium septicum]
 gi|209164079|gb|ACI40747.1| RecA [Clostridium septicum]
 gi|209164081|gb|ACI40748.1| RecA [Clostridium septicum]
 gi|209164083|gb|ACI40749.1| RecA [Clostridium septicum]
 gi|209164085|gb|ACI40750.1| RecA [Clostridium septicum]
 gi|209164087|gb|ACI40751.1| RecA [Clostridium septicum]
 gi|209164089|gb|ACI40752.1| RecA [Clostridium septicum]
 gi|209164091|gb|ACI40753.1| RecA [Clostridium septicum]
 gi|209164093|gb|ACI40754.1| RecA [Clostridium septicum]
 gi|209164095|gb|ACI40755.1| RecA [Clostridium septicum]
 gi|209164097|gb|ACI40756.1| RecA [Clostridium septicum]
 gi|209164099|gb|ACI40757.1| RecA [Clostridium septicum]
 gi|209164101|gb|ACI40758.1| RecA [Clostridium septicum]
 gi|209164103|gb|ACI40759.1| RecA [Clostridium septicum]
 gi|209164105|gb|ACI40760.1| RecA [Clostridium septicum]
 gi|209164107|gb|ACI40761.1| RecA [Clostridium septicum]
 gi|209164109|gb|ACI40762.1| RecA [Clostridium septicum]
 gi|209164111|gb|ACI40763.1| RecA [Clostridium septicum]
 gi|209164113|gb|ACI40764.1| RecA [Clostridium septicum]
 gi|209164115|gb|ACI40765.1| RecA [Clostridium septicum]
 gi|209164117|gb|ACI40766.1| RecA [Clostridium septicum]
 gi|209164119|gb|ACI40767.1| RecA [Clostridium septicum]
 gi|209164121|gb|ACI40768.1| RecA [Clostridium septicum]
 gi|209164123|gb|ACI40769.1| RecA [Clostridium septicum]
 gi|209164125|gb|ACI40770.1| RecA [Clostridium septicum]
 gi|209164127|gb|ACI40771.1| RecA [Clostridium septicum]
 gi|209164129|gb|ACI40772.1| RecA [Clostridium septicum]
 gi|209164131|gb|ACI40773.1| RecA [Clostridium septicum]
 gi|209164133|gb|ACI40774.1| RecA [Clostridium septicum]
 gi|209164135|gb|ACI40775.1| RecA [Clostridium septicum]
 gi|209164137|gb|ACI40776.1| RecA [Clostridium septicum]
 gi|209164139|gb|ACI40777.1| RecA [Clostridium septicum]
 gi|209164141|gb|ACI40778.1| RecA [Clostridium septicum]
 gi|209164143|gb|ACI40779.1| RecA [Clostridium septicum]
 gi|209164145|gb|ACI40780.1| RecA [Clostridium septicum]
 gi|209164147|gb|ACI40781.1| RecA [Clostridium septicum]
 gi|209164149|gb|ACI40782.1| RecA [Clostridium septicum]
 gi|209164151|gb|ACI40783.1| RecA [Clostridium septicum]
 gi|209164153|gb|ACI40784.1| RecA [Clostridium septicum]
 gi|209164155|gb|ACI40785.1| RecA [Clostridium septicum]
 gi|209164157|gb|ACI40786.1| RecA [Clostridium septicum]
 gi|209164159|gb|ACI40787.1| RecA [Clostridium septicum]
 gi|209164161|gb|ACI40788.1| RecA [Clostridium septicum]
 gi|209164163|gb|ACI40789.1| RecA [Clostridium septicum]
 gi|209164165|gb|ACI40790.1| RecA [Clostridium septicum]
 gi|209164167|gb|ACI40791.1| RecA [Clostridium septicum]
 gi|209164169|gb|ACI40792.1| RecA [Clostridium septicum]
 gi|209164171|gb|ACI40793.1| RecA [Clostridium septicum]
 gi|209164173|gb|ACI40794.1| RecA [Clostridium septicum]
 gi|209164175|gb|ACI40795.1| RecA [Clostridium septicum]
 gi|209164177|gb|ACI40796.1| RecA [Clostridium septicum]
 gi|209164179|gb|ACI40797.1| RecA [Clostridium septicum]
 gi|209164181|gb|ACI40798.1| RecA [Clostridium septicum]
 gi|209164183|gb|ACI40799.1| RecA [Clostridium septicum]
 gi|209164185|gb|ACI40800.1| RecA [Clostridium septicum]
 gi|209164187|gb|ACI40801.1| RecA [Clostridium septicum]
 gi|209164189|gb|ACI40802.1| RecA [Clostridium septicum]
 gi|209164191|gb|ACI40803.1| RecA [Clostridium septicum]
          Length = 188

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 130/188 (69%), Positives = 159/188 (84%)

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
             YAR LGVD ++L++SQPDTGEQALEI + LVRSGA+D+IVIDSVAAL PRAEIEG+MG
Sbjct: 1   PSYARNLGVDTESLIVSQPDTGEQALEIAEALVRSGAIDVIVIDSVAALVPRAEIEGEMG 60

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRKLT +I ++ C+ +FINQ+R K+GVMFG+PETTTGG ALKFY+S
Sbjct: 61  DSHVGLQARLMSQALRKLTGTIQKTGCVAIFINQLREKVGVMFGNPETTTGGRALKFYAS 120

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           VRLD+RR+ SIK  + I GN+TRVKV+KNK+A PFKQ EFDIMY EGIS  G ++D+GVK
Sbjct: 121 VRLDVRRIDSIKQGEGIVGNRTRVKVMKNKVAPPFKQAEFDIMYNEGISRTGNIVDVGVK 180

Query: 289 ASIVDKSG 296
             I+ KSG
Sbjct: 181 EGIIQKSG 188


>gi|213012328|gb|ACJ38730.1| recombination-repair protein [Vibrio mediterranei]
 gi|213012438|gb|ACJ38785.1| recombination-repair protein [Vibrio mediterranei]
 gi|213012450|gb|ACJ38791.1| recombination-repair protein [Vibrio mediterranei]
 gi|213012464|gb|ACJ38798.1| recombination-repair protein [Vibrio mediterranei]
 gi|213012466|gb|ACJ38799.1| recombination-repair protein [Vibrio mediterranei]
 gi|213012470|gb|ACJ38801.1| recombination-repair protein [Vibrio mediterranei]
 gi|213012512|gb|ACJ38822.1| recombination-repair protein [Vibrio mediterranei]
 gi|213012514|gb|ACJ38823.1| recombination-repair protein [Vibrio mediterranei]
 gi|213012556|gb|ACJ38844.1| recombination-repair protein [Vibrio mediterranei]
 gi|213012566|gb|ACJ38849.1| recombination-repair protein [Vibrio mediterranei]
          Length = 197

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 141/197 (71%), Positives = 173/197 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAF+DAEHALD IYA+KLGVD+ +LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPIYAKKLGVDIDSLLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMYG 273
           NK+A+PFKQ E  I+YG
Sbjct: 181 NKIAAPFKQAETQILYG 197


>gi|150024098|gb|ABR58853.1| recombination protein A [Mesorhizobium temperatum]
          Length = 171

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 134/168 (79%), Positives = 155/168 (92%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDA
Sbjct: 4   EIETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDA 63

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEI
Sbjct: 64  EHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEI 123

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           EG+MG+SLPG+QARLMSQALRKLT+SISRS  +++FINQ+RMKIG + 
Sbjct: 124 EGEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKIGGLM 171


>gi|33087799|gb|AAP93030.1| recombination protein A [Yersinia bercovieri]
          Length = 172

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 116/174 (66%), Positives = 142/174 (81%), Gaps = 2/174 (1%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQ 172


>gi|213012462|gb|ACJ38797.1| recombination-repair protein [Vibrio tubiashii]
 gi|213012492|gb|ACJ38812.1| recombination-repair protein [Vibrio tubiashii]
 gi|213012496|gb|ACJ38814.1| recombination-repair protein [Vibrio tubiashii]
 gi|213012498|gb|ACJ38815.1| recombination-repair protein [Vibrio tubiashii]
 gi|213012568|gb|ACJ38850.1| recombination-repair protein [Vibrio tubiashii]
 gi|213012578|gb|ACJ38855.1| recombination-repair protein [Vibrio tubiashii]
          Length = 197

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 140/197 (71%), Positives = 172/197 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMYG 273
           NK+A+PFKQ E  I+YG
Sbjct: 181 NKIAAPFKQAETQILYG 197


>gi|160947838|gb|ABX54728.1| RecA protein [Bradyrhizobium elkanii]
          Length = 167

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 123/168 (73%), Positives = 148/168 (88%), Gaps = 1/168 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG++M+LG        +E +SSGSLGLDIALG+GG PKGR+VEIYGPESSGKTT
Sbjct: 1   IERSFGKGSVMKLGKNDRSM-DVETISSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVR
Sbjct: 60  LALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           SGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI
Sbjct: 120 SGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASI 167


>gi|158631774|gb|ABW74992.1| RecA [Mesorhizobium gobiense]
          Length = 167

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 136/167 (81%), Positives = 156/167 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDA
Sbjct: 1   EIETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEI
Sbjct: 61  EHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           EG+MG+SLPG+QARLMSQALRKLT+SISRS  +++FINQ+RMKIGVM
Sbjct: 121 EGEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKIGVM 167


>gi|156766461|gb|ABU94865.1| recombination protein A [Bradyrhizobium sp. 5111P]
          Length = 170

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 122/171 (71%), Positives = 150/171 (87%), Gaps = 1/171 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG        IE +SSGSLGLDIALG+GG P+GR+VEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSM-DIETISSGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 170


>gi|311352248|gb|ADP93309.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352250|gb|ADP93310.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352252|gb|ADP93311.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352254|gb|ADP93312.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352256|gb|ADP93313.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352258|gb|ADP93314.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352260|gb|ADP93315.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352262|gb|ADP93316.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352264|gb|ADP93317.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352266|gb|ADP93318.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352268|gb|ADP93319.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352270|gb|ADP93320.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352272|gb|ADP93321.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352274|gb|ADP93322.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352276|gb|ADP93323.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352278|gb|ADP93324.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352280|gb|ADP93325.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352282|gb|ADP93326.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352284|gb|ADP93327.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352286|gb|ADP93328.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352288|gb|ADP93329.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352290|gb|ADP93330.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352292|gb|ADP93331.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352294|gb|ADP93332.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352296|gb|ADP93333.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352298|gb|ADP93334.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352300|gb|ADP93335.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352302|gb|ADP93336.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352304|gb|ADP93337.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352306|gb|ADP93338.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352308|gb|ADP93339.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352310|gb|ADP93340.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352312|gb|ADP93341.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352314|gb|ADP93342.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352316|gb|ADP93343.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352318|gb|ADP93344.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352320|gb|ADP93345.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352322|gb|ADP93346.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352324|gb|ADP93347.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352326|gb|ADP93348.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352328|gb|ADP93349.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352330|gb|ADP93350.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352332|gb|ADP93351.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352334|gb|ADP93352.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352336|gb|ADP93353.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352338|gb|ADP93354.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352340|gb|ADP93355.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352342|gb|ADP93356.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352344|gb|ADP93357.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352346|gb|ADP93358.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352348|gb|ADP93359.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352350|gb|ADP93360.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352352|gb|ADP93361.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352354|gb|ADP93362.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352356|gb|ADP93363.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352358|gb|ADP93364.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352360|gb|ADP93365.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352362|gb|ADP93366.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352364|gb|ADP93367.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352366|gb|ADP93368.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352368|gb|ADP93369.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352370|gb|ADP93370.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352372|gb|ADP93371.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352374|gb|ADP93372.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352376|gb|ADP93373.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352378|gb|ADP93374.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352380|gb|ADP93375.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352382|gb|ADP93376.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352384|gb|ADP93377.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352386|gb|ADP93378.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352388|gb|ADP93379.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352390|gb|ADP93380.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352392|gb|ADP93381.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352394|gb|ADP93382.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352396|gb|ADP93383.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352398|gb|ADP93384.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352400|gb|ADP93385.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352402|gb|ADP93386.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352404|gb|ADP93387.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352406|gb|ADP93388.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352408|gb|ADP93389.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352410|gb|ADP93390.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352412|gb|ADP93391.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352414|gb|ADP93392.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352416|gb|ADP93393.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352418|gb|ADP93394.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352420|gb|ADP93395.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352422|gb|ADP93396.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352424|gb|ADP93397.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352426|gb|ADP93398.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352428|gb|ADP93399.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352430|gb|ADP93400.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352432|gb|ADP93401.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352434|gb|ADP93402.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352436|gb|ADP93403.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352438|gb|ADP93404.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352440|gb|ADP93405.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352442|gb|ADP93406.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352444|gb|ADP93407.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352446|gb|ADP93408.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352448|gb|ADP93409.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352450|gb|ADP93410.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352452|gb|ADP93411.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352454|gb|ADP93412.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352456|gb|ADP93413.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352458|gb|ADP93414.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352460|gb|ADP93415.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352462|gb|ADP93416.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352464|gb|ADP93417.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352466|gb|ADP93418.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352468|gb|ADP93419.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352470|gb|ADP93420.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352472|gb|ADP93421.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352474|gb|ADP93422.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352476|gb|ADP93423.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352478|gb|ADP93424.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352480|gb|ADP93425.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352482|gb|ADP93426.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352484|gb|ADP93427.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352486|gb|ADP93428.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352488|gb|ADP93429.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352490|gb|ADP93430.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352492|gb|ADP93431.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352494|gb|ADP93432.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352496|gb|ADP93433.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352498|gb|ADP93434.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352500|gb|ADP93435.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352502|gb|ADP93436.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352504|gb|ADP93437.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352506|gb|ADP93438.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352508|gb|ADP93439.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352510|gb|ADP93440.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352512|gb|ADP93441.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352514|gb|ADP93442.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352516|gb|ADP93443.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352518|gb|ADP93444.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352520|gb|ADP93445.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352522|gb|ADP93446.1| DNA recombinase protein RecA [Clostridium perfringens]
 gi|311352524|gb|ADP93447.1| DNA recombinase protein RecA [Clostridium perfringens]
          Length = 188

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 129/188 (68%), Positives = 165/188 (87%)

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YA++LGV++ +L++SQPDTGEQALEIT+ LVRSGA+D++V+DSVAAL PRAEIEG+MG
Sbjct: 1   PVYAKRLGVNIDDLVVSQPDTGEQALEITEALVRSGAIDVLVVDSVAALVPRAEIEGEMG 60

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +S  G+QARLMSQALRKLT +I++S C+++FINQ+R K+G+MFG+PETT GG ALKFY+S
Sbjct: 61  DSHVGLQARLMSQALRKLTGTINKSNCVVIFINQLREKVGIMFGNPETTPGGRALKFYAS 120

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
           VR+DIRR+ SIK  D ITGN+TRVK+VKNK+A PFKQ EFDIMY EGIS  G ++D+GVK
Sbjct: 121 VRMDIRRIDSIKQGDGITGNRTRVKIVKNKVAPPFKQAEFDIMYNEGISKEGNIVDVGVK 180

Query: 289 ASIVDKSG 296
            +IV KSG
Sbjct: 181 ENIVQKSG 188


>gi|33087821|gb|AAP93041.1| recombination protein A [Yersinia frederiksenii]
          Length = 170

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 112/172 (65%), Positives = 139/172 (80%), Gaps = 2/172 (1%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTL 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RS
Sbjct: 59  TLQVIAAAQRAGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           GAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  
Sbjct: 119 GAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANT 170


>gi|118185926|gb|ABK76576.1| RecA [Bacillus vietnamensis]
          Length = 171

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 112/173 (64%), Positives = 141/173 (81%), Gaps = 2/173 (1%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
            QI++ +GKG+IM+LG +      +    SGSL LD ALGIGG+P+GRI+E+YGPESSGK
Sbjct: 1   KQIEKQFGKGSIMKLGEKTD--RNVVTCPSGSLALDAALGIGGYPRGRIIEVYGPESSGK 58

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TT+ALH IA+ Q  GG  AF+DAEHALD  YA+KLGV++  LL+SQPDTGEQALEI + L
Sbjct: 59  TTVALHAIAEVQAQGGQAAFIDAEHALDPEYAQKLGVNIDELLLSQPDTGEQALEIAEAL 118

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           VRSGAVD IV+DSVAAL P+AEIEG+MG++  G+QARLMSQALRKL+ +I++S
Sbjct: 119 VRSGAVDAIVVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLSGAINKS 171


>gi|112791520|gb|ABI22030.1| recombinase A [Samsonia erythrinae]
          Length = 196

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 140/196 (71%), Positives = 170/196 (86%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FI
Sbjct: 61  TRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIKD + + GN+TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGEEVVGNETRVKVVKNKVA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF I+YGEGI
Sbjct: 181 APFKQAEFQILYGEGI 196


>gi|156766453|gb|ABU94861.1| recombination protein A [Bradyrhizobium sp. aeky10]
          Length = 170

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 122/171 (71%), Positives = 150/171 (87%), Gaps = 1/171 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG        +E +SSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSM-DVETISSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSHTMV 170


>gi|213012310|gb|ACJ38721.1| recombination-repair protein [Vibrio chagasii]
 gi|213012484|gb|ACJ38808.1| recombination-repair protein [Vibrio chagasii]
 gi|213012508|gb|ACJ38820.1| recombination-repair protein [Vibrio chagasii]
          Length = 197

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 143/197 (72%), Positives = 172/197 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMYG 273
           NK+A+PFKQ E  I+YG
Sbjct: 181 NKIAAPFKQAETQILYG 197


>gi|160947834|gb|ABX54726.1| RecA protein [Bradyrhizobium yuanmingense]
          Length = 167

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 127/168 (75%), Positives = 149/168 (88%), Gaps = 1/168 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG++M+LG        IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTT
Sbjct: 1   IERSFGKGSVMKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVR
Sbjct: 60  LALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           SGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI
Sbjct: 120 SGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASI 167


>gi|307343358|emb|CBJ18120.1| recombinase A [Micromonospora rosaria]
          Length = 180

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 131/180 (72%), Positives = 154/180 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG P+GR+VE+YGPESSGKTT+ALH +A +Q+ GG  AFVDAEHALD  Y
Sbjct: 1   SIALDVALGVGGLPRGRVVEVYGPESSGKTTVALHAVANAQRNGGIAAFVDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDALLVSQPDTGEQALEIVDMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
            G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRL
Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRL 180


>gi|194476417|gb|ACF74773.1| RecA [Rhizobium sp. CCBAU 83479]
          Length = 169

 Score =  183 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 135/168 (80%), Positives = 157/168 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDA
Sbjct: 2   EIETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEI
Sbjct: 62  EHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEI 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           EG+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FIN +RMKIGVM+
Sbjct: 122 EGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINHIRMKIGVMY 169


>gi|112791534|gb|ABI22037.1| recombinase A [Brenneria quercina]
          Length = 196

 Score =  183 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 141/196 (71%), Positives = 171/196 (87%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQRKGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FI
Sbjct: 61  ARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSSTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IKD D + G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKDGDEVVGSETRVKVVKNKVA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF IMYGEGI
Sbjct: 181 APFKQAEFQIMYGEGI 196


>gi|282952572|emb|CBI75463.1| DNA repair protein RecA [Pseudomonas arsenicoxydans]
          Length = 200

 Score =  183 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 139/200 (69%), Positives = 169/200 (84%)

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           CAF DAEHALD  YA KL V++ +LL+SQPDTGEQALEITDMLVRS AVD+I++ S+AAL
Sbjct: 1   CAFXDAEHALDPEYAGKLXVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVYSLAAL 60

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
            P AEIEG+MG+   G+QARLMSQALRK+T  I  + C+++FINQ+RMKIGVMFGSPETT
Sbjct: 61  VPNAEIEGEMGDMHVGLQARLMSQALRKITGYIKNANCLVIFINQIRMKIGVMFGSPETT 120

Query: 218 TGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277
           TGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+ASPF+Q EF I+YG+GI 
Sbjct: 121 TGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVASPFRQAEFQILYGKGIY 180

Query: 278 FFGELIDLGVKASIVDKSGA 297
             GE+IDLGV    V+KSGA
Sbjct: 181 LNGEMIDLGVLHGFVEKSGA 200


>gi|29652074|gb|AAO87699.1| RecA [Listeria monocytogenes]
          Length = 172

 Score =  183 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 117/174 (67%), Positives = 145/174 (83%), Gaps = 2/174 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA
Sbjct: 1   GSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRSGAVD++
Sbjct: 59  EVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDML 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+
Sbjct: 119 VIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQI 172


>gi|33087873|gb|AAP93067.1| recombination protein A [Yersinia rohdei]
          Length = 175

 Score =  183 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 118/177 (66%), Positives = 145/177 (81%), Gaps = 2/177 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I
Sbjct: 59  AAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVI 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           ++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ+RMK
Sbjct: 119 IVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQIRMK 175


>gi|270485025|gb|ACZ82280.1| RecA protein [Vibrio coralliilyticus]
 gi|270485027|gb|ACZ82281.1| RecA protein [Vibrio coralliilyticus]
 gi|270485029|gb|ACZ82282.1| RecA protein [Vibrio coralliilyticus]
 gi|270485031|gb|ACZ82283.1| RecA protein [Vibrio coralliilyticus]
 gi|270485033|gb|ACZ82284.1| RecA protein [Vibrio coralliilyticus P1]
 gi|270485035|gb|ACZ82285.1| RecA protein [Vibrio coralliilyticus]
 gi|270485037|gb|ACZ82286.1| RecA protein [Vibrio coralliilyticus]
 gi|270485039|gb|ACZ82287.1| RecA protein [Vibrio coralliilyticus]
 gi|270485041|gb|ACZ82288.1| RecA protein [Vibrio coralliilyticus]
 gi|270485043|gb|ACZ82289.1| RecA protein [Vibrio coralliilyticus]
 gi|270485045|gb|ACZ82290.1| RecA protein [Vibrio coralliilyticus]
 gi|270485047|gb|ACZ82291.1| RecA protein [Vibrio coralliilyticus]
 gi|270485049|gb|ACZ82292.1| RecA protein [Vibrio coralliilyticus]
          Length = 191

 Score =  183 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 138/191 (72%), Positives = 169/191 (88%)

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
           RIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQP
Sbjct: 1   RIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQP 60

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           DTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT
Sbjct: 61  DTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLT 120

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + G
Sbjct: 121 GNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVG 180

Query: 248 NQTRVKVVKNK 258
           N+TR+KVVKNK
Sbjct: 181 NETRIKVVKNK 191


>gi|160947816|gb|ABX54717.1| RecA protein [Bradyrhizobium elkanii]
          Length = 167

 Score =  183 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 123/168 (73%), Positives = 148/168 (88%), Gaps = 1/168 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG++M+LG        +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTT
Sbjct: 1   IERSFGKGSVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVR
Sbjct: 60  LALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           SGA+D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI
Sbjct: 120 SGAIDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASI 167


>gi|156766445|gb|ABU94857.1| recombination protein A [Bradyrhizobium sp. Ai1a-2]
          Length = 170

 Score =  183 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 124/171 (72%), Positives = 151/171 (88%), Gaps = 1/171 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG        IE VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSM-DIETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGA+
Sbjct: 60  TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 170


>gi|307343406|emb|CBJ18144.1| recombinase A [Micromonospora sp. CR18]
 gi|307343432|emb|CBJ18157.1| recombinase A [Micromonospora sp. SGA16]
          Length = 180

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 131/180 (72%), Positives = 154/180 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDALLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
            G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRL
Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRL 180


>gi|89145050|emb|CAJ57533.1| recombinase A [Microbacterium terregens]
          Length = 198

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 139/198 (70%), Positives = 163/198 (82%)

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AF+DAEHALD  YA KLGVD+  LL+SQPDTGEQALEI DML+RSG++D+IVIDSVAAL 
Sbjct: 1   AFIDAEHALDPDYAAKLGVDIDQLLVSQPDTGEQALEIADMLIRSGSIDLIVIDSVAALV 60

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           P+AEIEG+MG+S  G+QARLMSQALRKLT  ++ +   ++FINQ+R KIGV FGSPETT 
Sbjct: 61  PKAEIEGEMGDSHVGLQARLMSQALRKLTGGLNTTNTTMIFINQLREKIGVFFGSPETTA 120

Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISF 278
           GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA PFKQ EFDI+YG GIS 
Sbjct: 121 GGKALKFYASVRLDIRRIETMKDGTDAIGNRTRVKVVKNKMAPPFKQAEFDILYGTGISR 180

Query: 279 FGELIDLGVKASIVDKSG 296
            G LID GV+  IV KSG
Sbjct: 181 EGSLIDFGVEHEIVKKSG 198


>gi|160947828|gb|ABX54723.1| RecA protein [Bradyrhizobium japonicum]
          Length = 168

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 125/169 (73%), Positives = 150/169 (88%), Gaps = 1/169 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG++M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTT
Sbjct: 1   IERAFGKGSVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVR
Sbjct: 60  LALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           SGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI+
Sbjct: 120 SGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASIN 168


>gi|289812921|gb|ADD20921.1| recombinase A [Mesorhizobium sp. CCBAU 33182]
          Length = 164

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 132/164 (80%), Positives = 153/164 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDA
Sbjct: 1   EIETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEI
Sbjct: 61  EHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           EG+MG++LPG+QARLMSQALRKLT+SISRS  +++FINQ+RMKI
Sbjct: 121 EGEMGDALPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKI 164


>gi|156766447|gb|ABU94858.1| recombination protein A [Bradyrhizobium sp. Lh10]
 gi|156766449|gb|ABU94859.1| recombination protein A [Bradyrhizobium sp. Kus-2]
 gi|156766451|gb|ABU94860.1| recombination protein A [Bradyrhizobium sp. Vgn-2]
          Length = 170

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 124/171 (72%), Positives = 150/171 (87%), Gaps = 1/171 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG        +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 DVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSHTMV 170


>gi|307343438|emb|CBJ18160.1| recombinase A [Micromonospora sp. SGB14]
          Length = 180

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 131/180 (72%), Positives = 155/180 (86%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPDY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   LL+SQPDTGEQALEITDMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDALLVSQPDTGEQALEITDMLVRSGAIDIVVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
            G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRL
Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRL 180


>gi|213012444|gb|ACJ38788.1| recombination-repair protein [Listonella pelagia]
          Length = 197

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 141/197 (71%), Positives = 172/197 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQREGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR++VVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIQVVK 180

Query: 257 NKMASPFKQVEFDIMYG 273
           NK+A+PFKQ E  I+YG
Sbjct: 181 NKIAAPFKQAETQILYG 197


>gi|291246101|gb|ADD85177.1| RecA [Borrelia recurrentis]
          Length = 205

 Score =  182 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 128/205 (62%), Positives = 171/205 (83%), Gaps = 1/205 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           ++G    + + +E + SG + LD A+GIGG+P+GR+VEI+GPESSGKTTL L  IA+ QK
Sbjct: 2   KMGE-SPVGKYLESIPSGFILLDEAIGIGGYPRGRVVEIFGPESSGKTTLTLQAIAEIQK 60

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
           TGG  AF+DAEHALD +YAR LGV++  L +SQPDTGEQAL+I + L+RSG VD+IV+DS
Sbjct: 61  TGGIAAFIDAEHALDPVYARALGVNINELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDS 120

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           VAAL P+AEI+G+MG++  G+QARLMS+ALRK+T+ +S+S   ++FINQ+RMKIG++FGS
Sbjct: 121 VAALMPQAEIDGEMGDTQIGLQARLMSKALRKITAILSKSNACIMFINQIRMKIGLVFGS 180

Query: 214 PETTTGGNALKFYSSVRLDIRRVGS 238
           PETTTGGNALKFYSS+RL++R+V  
Sbjct: 181 PETTTGGNALKFYSSLRLEVRKVEQ 205


>gi|16612092|gb|AAL27451.1| RecA [Burkholderia cepacia]
          Length = 175

 Score =  182 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 128/176 (72%), Positives = 152/176 (86%), Gaps = 1/176 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 175


>gi|289190708|gb|ADC93459.1| recombinase A protein [Rhizobium tropici]
          Length = 169

 Score =  182 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 135/170 (79%), Positives = 157/170 (92%), Gaps = 1/170 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LGS  ++ E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK
Sbjct: 1   KLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQK 59

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DS
Sbjct: 60  KGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDS 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           VAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+
Sbjct: 120 VAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQI 169


>gi|156766417|gb|ABU94843.1| recombination protein A [Bradyrhizobium sp. Pter7]
          Length = 170

 Score =  182 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 124/171 (72%), Positives = 150/171 (87%), Gaps = 1/171 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG        +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A+ Q+ GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEGQRKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 DVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 170


>gi|225350251|gb|ACN88010.1| RecA [Vibrio sp. SG167]
          Length = 201

 Score =  182 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 138/201 (68%), Positives = 173/201 (86%)

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           G E SGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQA
Sbjct: 1   GSEFSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQA 60

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S
Sbjct: 61  LEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQS 120

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+K
Sbjct: 121 NCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIK 180

Query: 254 VVKNKMASPFKQVEFDIMYGE 274
           VVKNK+A+PFK+    IMYG+
Sbjct: 181 VVKNKIAAPFKEANTQIMYGQ 201


>gi|16612096|gb|AAL27452.1| RecA [Burkholderia cepacia]
          Length = 175

 Score =  182 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 128/176 (72%), Positives = 152/176 (86%), Gaps = 1/176 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPKLLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 175


>gi|68637431|emb|CAF21818.1| recombinase A [Weissella minor]
          Length = 190

 Score =  182 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 128/190 (67%), Positives = 160/190 (84%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
             +  S+GSL LDIALGIGG+PKGRI+EIYGPESSGKTTLALH  A++QK GG  A++DA
Sbjct: 1   KTDSTSTGSLKLDIALGIGGYPKGRIMEIYGPESSGKTTLALHAAAEAQKAGGIVAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+A+D  YAR LGVD+  LL+SQPDTGEQ L I D L+ SGAVD++V+DSVAALTP+AEI
Sbjct: 61  ENAIDVEYARALGVDVDELLLSQPDTGEQGLAIADELISSGAVDLVVVDSVAALTPKAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           +G++G+S  G+QAR+MSQALRK++ SI ++   ++FINQ+R KIGVMFG+PETT GG AL
Sbjct: 121 DGEIGDSTVGLQARMMSQALRKMSGSILKTGTTVIFINQLREKIGVMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDI 233
           KFYSSVRLD+
Sbjct: 181 KFYSSVRLDV 190


>gi|323388486|gb|ADX60532.1| recombinase A [Geobacillus sp. NTU 03]
          Length = 187

 Score =  182 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 133/187 (71%), Positives = 162/187 (86%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           LG+GG+P+GRIVEIYGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD IYA+KLGV+
Sbjct: 1   LGVGGYPRGRIVEIYGPESSGKTTVALHAIAEVQKRGGQAAFIDAEHALDPIYAQKLGVN 60

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +  LL+SQPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEIEG+MG++  G+QARL
Sbjct: 61  IDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDAHVGLQARL 120

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MSQALRKL+ +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRL++RR   
Sbjct: 121 MSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYASVRLEVRRAEQ 180

Query: 239 IKDKDSI 245
           IK  + +
Sbjct: 181 IKQGNDM 187


>gi|289190710|gb|ADC93460.1| recombinase A protein [Sinorhizobium americanum]
          Length = 169

 Score =  182 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 136/170 (80%), Positives = 158/170 (92%), Gaps = 1/170 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A++QK
Sbjct: 1   KLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAEAQK 59

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DS
Sbjct: 60  KGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDS 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           VAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+
Sbjct: 120 VAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQI 169


>gi|160947844|gb|ABX54731.1| RecA protein [Bradyrhizobium liaoningense]
          Length = 167

 Score =  182 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 128/168 (76%), Positives = 149/168 (88%), Gaps = 1/168 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG++M+LG        IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTT
Sbjct: 1   IERSFGKGSVMKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVR
Sbjct: 60  LALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           SGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI
Sbjct: 120 SGAVDVMVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASI 167


>gi|156766443|gb|ABU94856.1| recombination protein A [Bradyrhizobium sp. Pp2-4]
          Length = 170

 Score =  182 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 123/171 (71%), Positives = 150/171 (87%), Gaps = 1/171 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG        +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGA+
Sbjct: 60  TVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 170


>gi|156766413|gb|ABU94841.1| recombination protein A [Bradyrhizobium sp. Pter37]
          Length = 170

 Score =  182 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 126/171 (73%), Positives = 151/171 (88%), Gaps = 1/171 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG        IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 170


>gi|213012436|gb|ACJ38784.1| recombination-repair protein [Vibrio mediterranei]
          Length = 196

 Score =  182 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 140/196 (71%), Positives = 172/196 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAF+DAEHALD IYA+KLGVD+ +LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPIYAKKLGVDIDSLLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMY 272
           NK+A+PFKQ E  I+Y
Sbjct: 181 NKIAAPFKQAETQILY 196


>gi|307343390|emb|CBJ18136.1| recombinase A [Micromonospora sp. GUI34]
          Length = 180

 Score =  182 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 131/180 (72%), Positives = 153/180 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           AR LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  ARALGVDTDALLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
            G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALK Y+SVRL
Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYASVRL 180


>gi|213012388|gb|ACJ38760.1| recombination-repair protein [Photobacterium rosenbergii]
          Length = 197

 Score =  182 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 142/197 (72%), Positives = 172/197 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAF+DAEHALD IYARKLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLEVIAAAQKQGKTCAFIDAEHALDPIYARKLGVDIDQLLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGAVDI+V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RK+T ++ +S C+
Sbjct: 61  ADALARSGAVDILVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKITGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMYG 273
           NK+A+PFKQ E  I+YG
Sbjct: 181 NKIAAPFKQAETQILYG 197


>gi|158631792|gb|ABW75001.1| RecA [Rhizobium sp. CCBAU 83268]
 gi|158631798|gb|ABW75004.1| RecA [Rhizobium sp. CCBAU 83530]
 gi|158631806|gb|ABW75008.1| RecA [Rhizobium sp. CCBAU 83309]
          Length = 169

 Score =  182 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 136/167 (81%), Positives = 157/167 (94%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDA
Sbjct: 3   EIETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEI
Sbjct: 63  EHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           EG+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIGVM
Sbjct: 123 EGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 169


>gi|112791494|gb|ABI22017.1| recombinase A [Enterobacter cancerogenus]
          Length = 196

 Score =  182 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 138/196 (70%), Positives = 172/196 (87%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  +A +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVVAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FI
Sbjct: 61  ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD +++ G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGENVVGSETRVKVVKNKIA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF I+YGEGI
Sbjct: 181 APFKQAEFQILYGEGI 196


>gi|307343157|emb|CBJ18108.1| recombinase A [Micromonospora echinospora]
          Length = 176

 Score =  182 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 126/176 (71%), Positives = 149/176 (84%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHAL
Sbjct: 1   IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D  YA+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M
Sbjct: 61  DPEYAKALGVDTDALLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           G+S  G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRAL 176


>gi|16612103|gb|AAL27454.1| RecA [Burkholderia cepacia]
          Length = 175

 Score =  182 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 128/176 (72%), Positives = 152/176 (86%), Gaps = 1/176 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 175


>gi|158631800|gb|ABW75005.1| RecA [Rhizobium sp. CCBAU 83517]
          Length = 172

 Score =  182 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 136/172 (79%), Positives = 157/172 (91%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
                 IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG C
Sbjct: 1   SRDVVEIETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGIC 60

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALT
Sbjct: 61  AFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALT 120

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           PRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIGVM
Sbjct: 121 PRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 172


>gi|156766415|gb|ABU94842.1| recombination protein A [Bradyrhizobium sp. Wall28]
 gi|156766421|gb|ABU94845.1| recombination protein A [Bradyrhizobium sp. Pter29]
 gi|156766429|gb|ABU94849.1| recombination protein A [Bradyrhizobium sp. La5-8]
 gi|156766433|gb|ABU94851.1| recombination protein A [Bradyrhizobium sp. Cp5.3]
          Length = 170

 Score =  182 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 126/171 (73%), Positives = 152/171 (88%), Gaps = 1/171 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG +      IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLG-KSDRSMDIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 170


>gi|50982237|gb|AAT91784.1| recombination protein A [Bradyrhizobium sp. BTAi1]
          Length = 170

 Score =  182 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 125/171 (73%), Positives = 151/171 (88%), Gaps = 1/171 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG        +E VS+GSLGLDIALGIGG PKGR++EIYGPESSGKTTLALHT+A++Q
Sbjct: 1   MKLGKNDRSM-DVETVSTGSLGLDIALGIGGLPKGRVIEIYGPESSGKTTLALHTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+D
Sbjct: 60  KKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           SVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 120 SVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSHTMVIFINQI 170


>gi|156766411|gb|ABU94840.1| recombination protein A [Bradyrhizobium sp. Pter4]
 gi|156766427|gb|ABU94848.1| recombination protein A [Bradyrhizobium sp. Ec3.3]
 gi|156766437|gb|ABU94853.1| recombination protein A [Bradyrhizobium sp. tpar1.1]
 gi|156766465|gb|ABU94867.1| recombination protein A [Bradyrhizobium sp. Albi6]
          Length = 170

 Score =  182 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 129/171 (75%), Positives = 153/171 (89%), Gaps = 1/171 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG +      IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLG-KSDRSMDIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAF+DAEHALD +YARKLGV++ +LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDDLLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D++VIDSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 DVMVIDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 170


>gi|158631796|gb|ABW75003.1| RecA [Rhizobium sp. CCBAU 83489]
          Length = 171

 Score =  182 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 136/167 (81%), Positives = 157/167 (94%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDA
Sbjct: 5   EIETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDA 64

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEI
Sbjct: 65  EHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEI 124

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           EG+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIGVM
Sbjct: 125 EGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 171


>gi|213012402|gb|ACJ38767.1| recombination-repair protein [Vibrio sp. R-616]
          Length = 196

 Score =  182 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 139/196 (70%), Positives = 171/196 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLECIAAAQKAGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMY 272
           NK+A+PFKQ E  I+Y
Sbjct: 181 NKIAAPFKQAETQILY 196


>gi|112791538|gb|ABI22039.1| recombinase A [Erwinia mallotivora]
 gi|112791540|gb|ABI22040.1| recombinase A [Erwinia psidii]
 gi|112791542|gb|ABI22041.1| recombinase A [Erwinia tracheiphila]
          Length = 196

 Score =  182 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 139/196 (70%), Positives = 171/196 (87%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FI
Sbjct: 61  ARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSETRVKVVKNKVA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF IMYGEGI
Sbjct: 181 APFKQAEFQIMYGEGI 196


>gi|32345040|gb|AAM93530.1| RecA protein [Rickettsia slovaca]
          Length = 182

 Score =  182 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 139/182 (76%), Positives = 163/182 (89%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALGIGG PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  Y
Sbjct: 1   SLGLDIALGIGGVPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+KLGV++  L+ISQPDTGEQALEI D L+RS  +D+I+IDSVAAL P++EIEG+MG++ 
Sbjct: 61  AKKLGVNIDELIISQPDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMGDAQ 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
              QARLMSQALRKLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+
Sbjct: 121 MASQARLMSQALRKLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRI 180

Query: 232 DI 233
           DI
Sbjct: 181 DI 182


>gi|156766423|gb|ABU94846.1| recombination protein A [Bradyrhizobium sp. Wall9]
          Length = 170

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 124/171 (72%), Positives = 150/171 (87%), Gaps = 1/171 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG        +E +SSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSM-DVETISSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 DVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 170


>gi|158631808|gb|ABW75009.1| RecA [Rhizobium sp. CCBAU 83267]
          Length = 170

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 134/165 (81%), Positives = 155/165 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDA
Sbjct: 3   EIETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEI
Sbjct: 63  EHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           EG+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIG
Sbjct: 123 EGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIG 167


>gi|195542196|gb|ACF98308.1| RecA [Rhizobium leguminosarum]
          Length = 169

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 135/169 (79%), Positives = 156/169 (92%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99
            I   IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CA
Sbjct: 1   KIVVEIETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICA 60

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTP
Sbjct: 61  FVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTP 120

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           RAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIG
Sbjct: 121 RAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIG 169


>gi|158631818|gb|ABW75014.1| RecA [Rhizobium sp. CCBAU 83485]
          Length = 168

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 136/167 (81%), Positives = 157/167 (94%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDA
Sbjct: 2   EIETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEI
Sbjct: 62  EHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEI 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           EG+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIGVM
Sbjct: 122 EGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 168


>gi|158631816|gb|ABW75013.1| RecA [Rhizobium sp. CCBAU 83440]
          Length = 166

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 136/166 (81%), Positives = 157/166 (94%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 1   IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE
Sbjct: 61  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIGVM
Sbjct: 121 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 166


>gi|156766419|gb|ABU94844.1| recombination protein A [Bradyrhizobium sp. Pter17]
 gi|156766431|gb|ABU94850.1| recombination protein A [Bradyrhizobium sp. Pe1.3]
          Length = 170

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 129/171 (75%), Positives = 151/171 (88%), Gaps = 1/171 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG        IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D++VIDSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 DVMVIDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 170


>gi|112791546|gb|ABI22043.1| recombinase A [Pantoea agglomerans]
          Length = 196

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 139/196 (70%), Positives = 172/196 (87%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIASAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FI
Sbjct: 61  ARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D++ G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSETRVKVVKNKIA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF IMYGEGI
Sbjct: 181 APFKQAEFQIMYGEGI 196


>gi|307343151|emb|CBJ18105.1| recombinase A [Micromonospora eburnea]
          Length = 179

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 129/179 (72%), Positives = 153/179 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG P+GR++EIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGVGGLPRGRVIEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDALLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
            G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR
Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVR 179


>gi|307343434|emb|CBJ18158.1| recombinase A [Micromonospora sp. SGA18]
          Length = 180

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 132/180 (73%), Positives = 154/180 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHALD  Y
Sbjct: 1   SIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   LL+SQPDTGEQALEITDMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDALLVSQPDTGEQALEITDMLVRSGAIDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
            G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALK Y+SVRL
Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYASVRL 180


>gi|156766425|gb|ABU94847.1| recombination protein A [Bradyrhizobium sp. Wall12]
 gi|156766435|gb|ABU94852.1| recombination protein A [Bradyrhizobium sp. tpma1.5]
 gi|156766439|gb|ABU94854.1| recombination protein A [Bradyrhizobium sp. Dr3b-11]
 gi|156766441|gb|ABU94855.1| recombination protein A [Bradyrhizobium sp. Cj3.3]
          Length = 170

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 125/171 (73%), Positives = 150/171 (87%), Gaps = 1/171 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG        +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 DVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 170


>gi|112791544|gb|ABI22042.1| recombinase A [Pantoea ananatis]
          Length = 196

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 140/196 (71%), Positives = 172/196 (87%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQRKGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FI
Sbjct: 61  ARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D++ G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSETRVKVVKNKIA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF IMYGEGI
Sbjct: 181 APFKQAEFQIMYGEGI 196


>gi|156766467|gb|ABU94868.1| recombination protein A [Bradyrhizobium sp. Dp6.5]
          Length = 170

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 124/171 (72%), Positives = 151/171 (88%), Gaps = 1/171 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 170


>gi|213012400|gb|ACJ38766.1| recombination-repair protein [Vibrio sinaloensis]
          Length = 196

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 140/196 (71%), Positives = 171/196 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMY 272
           NK+A+PFK+ E  I+Y
Sbjct: 181 NKIAAPFKEAETQILY 196


>gi|306517547|emb|CBO93062.1| DNA recombinase A [Pantoea stewartii subsp. stewartii]
          Length = 184

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 133/183 (72%), Positives = 159/183 (86%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LDIALG GG P GRIVEIYGPE+SGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+K
Sbjct: 1   LDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKK 60

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           LGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+
Sbjct: 61  LGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGL 120

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
            AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIR
Sbjct: 121 AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR 180

Query: 235 RVG 237
           R+ 
Sbjct: 181 RLS 183


>gi|158631794|gb|ABW75002.1| RecA [Rhizobium sp. CCBAU 83452]
          Length = 173

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 134/170 (78%), Positives = 155/170 (91%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
                 IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG C
Sbjct: 1   SRDVVEIETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGIC 60

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALT
Sbjct: 61  AFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALT 120

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           PRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIG
Sbjct: 121 PRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIG 170


>gi|158631784|gb|ABW74997.1| RecA [Rhizobium sp. CCBAU 83480]
          Length = 168

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 134/165 (81%), Positives = 155/165 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDA
Sbjct: 4   EIETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDA 63

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEI
Sbjct: 64  EHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEI 123

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           EG+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIG
Sbjct: 124 EGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIG 168


>gi|207080809|gb|ACI22748.1| RecA [Rhizobium sp. J3-N43]
          Length = 161

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 132/162 (81%), Positives = 150/162 (92%), Gaps = 1/162 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG+  S+ E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL 
Sbjct: 1   FGKGSIMKLGANESVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAV
Sbjct: 60  TIAEAQKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+
Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTA 161


>gi|33087801|gb|AAP93031.1| recombination protein A [Yersinia enterocolitica]
 gi|33087803|gb|AAP93032.1| recombination protein A [Yersinia enterocolitica]
 gi|33087807|gb|AAP93034.1| recombination protein A [Yersinia enterocolitica]
 gi|33087837|gb|AAP93049.1| recombination protein A [Yersinia kristensenii]
          Length = 171

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 115/173 (66%), Positives = 141/173 (81%), Gaps = 2/173 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I
Sbjct: 59  AAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVI 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           ++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ
Sbjct: 119 IVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQ 171


>gi|32345046|gb|AAM93533.1| RecA protein [Rickettsia montanensis]
          Length = 182

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 140/182 (76%), Positives = 164/182 (90%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALGIGG PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  Y
Sbjct: 1   SLGLDIALGIGGVPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+KLGV++  L+ISQPDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++ 
Sbjct: 61  AKKLGVNIDELIISQPDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQ 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
              QARLMSQALRKLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+
Sbjct: 121 MASQARLMSQALRKLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRI 180

Query: 232 DI 233
           DI
Sbjct: 181 DI 182


>gi|160947826|gb|ABX54722.1| RecA protein [Bradyrhizobium elkanii]
          Length = 172

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 123/170 (72%), Positives = 148/170 (87%), Gaps = 1/170 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+  +GKG++M+LG        +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTT
Sbjct: 1   IELSFGKGSVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVR
Sbjct: 60  LALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           SGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI +
Sbjct: 120 SGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASIIK 169


>gi|195542202|gb|ACF98311.1| RecA [Rhizobium yanglingense]
          Length = 169

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 135/165 (81%), Positives = 154/165 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDA
Sbjct: 4   EIETISTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDA 63

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEI
Sbjct: 64  EHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEI 123

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           EG+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIG
Sbjct: 124 EGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIG 168


>gi|50982239|gb|AAT91785.1| recombination protein A [Bradyrhizobium sp. IRBG127]
 gi|50982241|gb|AAT91786.1| recombination protein A [Bradyrhizobium sp. IRBG231]
          Length = 170

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 127/171 (74%), Positives = 151/171 (88%), Gaps = 1/171 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG        +E VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++Q
Sbjct: 1   MKLGKNDRSM-DVETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+D
Sbjct: 60  KKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           SVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 120 SVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMVIFINQI 170


>gi|33087871|gb|AAP93066.1| recombination protein A [Yersinia rohdei]
          Length = 158

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 109/160 (68%), Positives = 131/160 (81%), Gaps = 2/160 (1%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
            AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPE
Sbjct: 1   AAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPE 58

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI
Sbjct: 59  SSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEI 118

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ A
Sbjct: 119 CDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAA 158


>gi|18076869|emb|CAC87601.1| recA protein [Pseudomonas resinovorans]
          Length = 199

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 141/199 (70%), Positives = 174/199 (87%)

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AV
Sbjct: 1   VIAEAQKMGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAV 60

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+I++DSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T +I  + C+++FINQ+RMK
Sbjct: 61  DVIIVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G++K+ + + G++TRVKVVKNK+A PF+Q 
Sbjct: 121 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGEEVVGSETRVKVVKNKVAPPFRQA 180

Query: 267 EFDIMYGEGISFFGELIDL 285
           EF IMYG+GI   GE+IDL
Sbjct: 181 EFQIMYGKGIYRTGEIIDL 199


>gi|112791554|gb|ABI22047.1| recombinase A [Erwinia pyrifoliae DSM 12163]
          Length = 196

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 139/196 (70%), Positives = 170/196 (86%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  S  +L+FI
Sbjct: 61  ARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNSGTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSETRVKVVKNKVA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF IMYGEGI
Sbjct: 181 APFKQAEFQIMYGEGI 196


>gi|33087843|gb|AAP93052.1| recombination protein A [Yersinia kristensenii]
          Length = 172

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 115/174 (66%), Positives = 142/174 (81%), Gaps = 2/174 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I
Sbjct: 59  AAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVI 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           ++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ+
Sbjct: 119 IVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQI 172


>gi|289064100|gb|ADC80443.1| recombination protein A [Rhizobium sp. CCBAU 65647]
          Length = 166

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 138/164 (84%), Positives = 155/164 (94%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDA
Sbjct: 3   EIETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEI
Sbjct: 63  EHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           EG+MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKI
Sbjct: 123 EGEMGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKI 166


>gi|307343362|emb|CBJ18122.1| recombinase A [Micromonospora siamensis]
          Length = 179

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 132/179 (73%), Positives = 154/179 (86%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHALD  Y
Sbjct: 1   SIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   LL+SQPDTGEQALEITDMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDALLVSQPDTGEQALEITDMLVRSGAIDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
            G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR
Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVR 179


>gi|307343422|emb|CBJ18152.1| recombinase A [Micromonospora sp. SG15]
          Length = 180

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 131/180 (72%), Positives = 154/180 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
            G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRL
Sbjct: 121 VGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRL 180


>gi|112791550|gb|ABI22045.1| recombinase A [Erwinia persicina]
          Length = 196

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 139/196 (70%), Positives = 170/196 (86%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIASAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  S  +L+FI
Sbjct: 61  ARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNSGTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSETRVKVVKNKIA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF IMYGEGI
Sbjct: 181 APFKQAEFQIMYGEGI 196


>gi|169883840|gb|ACA98016.1| recombination protein A [Mesorhizobium sp. CCBAU 73184]
 gi|169883842|gb|ACA98017.1| recombination protein A [Mesorhizobium sp. CCBAU 11166]
          Length = 167

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 133/164 (81%), Positives = 154/164 (93%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHA
Sbjct: 4   TVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHA 63

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+
Sbjct: 64  LDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGE 123

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           MG+SLPG+QARLMSQALRKLT+SISRS  +++FINQ+RMKIGVM
Sbjct: 124 MGDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKIGVM 167


>gi|112791530|gb|ABI22035.1| recombinase A [Erwinia chrysanthemi]
          Length = 196

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 139/196 (70%), Positives = 171/196 (87%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FI
Sbjct: 61  ARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ + + G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGEEVVGSETRVKVVKNKVA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF I+YGEGI
Sbjct: 181 APFKQAEFQILYGEGI 196


>gi|156766459|gb|ABU94864.1| recombination protein A [Bradyrhizobium sp. 5563D]
          Length = 170

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 124/171 (72%), Positives = 150/171 (87%), Gaps = 1/171 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG        +E +SSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSM-DVEAISSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 DVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 170


>gi|307343338|emb|CBJ18110.1| recombinase A [Micromonospora fulviviridis]
          Length = 179

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 130/179 (72%), Positives = 153/179 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDALLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
            G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR
Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVR 179


>gi|29652023|gb|AAO87674.1| RecA [Listeria monocytogenes]
          Length = 172

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 117/174 (67%), Positives = 145/174 (83%), Gaps = 2/174 (1%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA+
Sbjct: 1   SIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRSGAVD++V
Sbjct: 59  VQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           IDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+R
Sbjct: 119 IDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIR 172


>gi|219888946|emb|CAP59384.1| RecA protein [Mesorhizobium metallidurans]
 gi|219888948|emb|CAP59385.1| RecA protein [Mesorhizobium metallidurans]
 gi|219888950|emb|CAP59386.1| RecA protein [Mesorhizobium metallidurans]
 gi|219888952|emb|CAP59387.1| RecA protein [Mesorhizobium metallidurans]
 gi|219888954|emb|CAP59388.1| RecA protein [Mesorhizobium metallidurans]
 gi|219888956|emb|CAP59389.1| RecA protein [Mesorhizobium metallidurans]
          Length = 163

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 129/159 (81%), Positives = 148/159 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDA
Sbjct: 5   EIETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDA 64

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEI
Sbjct: 65  EHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEI 124

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           EG+MG+SLPG+QARLMSQALRKLT+SISRS  +++FINQ
Sbjct: 125 EGEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFINQ 163


>gi|307343370|emb|CBJ18126.1| recombinase A [Micromonospora sp. GUI3]
          Length = 180

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 131/180 (72%), Positives = 154/180 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
            G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRL
Sbjct: 121 VGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRL 180


>gi|112791496|gb|ABI22018.1| recombinase A [Citrobacter freundii]
 gi|112791502|gb|ABI22021.1| recombinase A [Klebsiella pneumoniae]
 gi|112791506|gb|ABI22023.1| recombinase A [Salmonella sp. ICMP 15669]
          Length = 196

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 139/196 (70%), Positives = 172/196 (87%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FI
Sbjct: 61  ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSETRVKVVKNKIA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF I+YGEGI
Sbjct: 181 APFKQAEFQILYGEGI 196


>gi|112791510|gb|ABI22025.1| recombinase A [Pectobacterium wasabiae]
          Length = 196

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 138/196 (70%), Positives = 170/196 (86%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FI
Sbjct: 61  TRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD + + G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVGSETRVKVVKNKVA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF I+YGEGI
Sbjct: 181 APFKQAEFQILYGEGI 196


>gi|158631776|gb|ABW74993.1| RecA [Mesorhizobium tarimense]
          Length = 168

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 134/164 (81%), Positives = 154/164 (93%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHA
Sbjct: 4   TVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHA 63

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+
Sbjct: 64  LDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGE 123

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           MG+SLPG+QARLMSQALRKLT+SISRS  +++FINQ+RMKIGVM
Sbjct: 124 MGDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKIGVM 167


>gi|158147275|gb|ABW22691.1| recA [Rhizobium leguminosarum]
          Length = 165

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 132/163 (80%), Positives = 153/163 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDA
Sbjct: 3   EIETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEI
Sbjct: 63  EHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           EG+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMK
Sbjct: 123 EGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMK 165


>gi|156766455|gb|ABU94862.1| recombination protein A [Bradyrhizobium sp. 1808N]
 gi|156766457|gb|ABU94863.1| recombination protein A [Bradyrhizobium sp. 5028A]
 gi|156766463|gb|ABU94866.1| recombination protein A [Bradyrhizobium sp. 5493M]
          Length = 170

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 125/171 (73%), Positives = 150/171 (87%), Gaps = 1/171 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 DVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 170


>gi|169883800|gb|ACA97996.1| recombination protein A [Mesorhizobium septentrionale]
 gi|169883802|gb|ACA97997.1| recombination protein A [Mesorhizobium septentrionale]
 gi|169883816|gb|ACA98004.1| recombination protein A [Mesorhizobium temperatum]
 gi|169883826|gb|ACA98009.1| recombination protein A [Mesorhizobium amorphae]
          Length = 167

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 134/164 (81%), Positives = 154/164 (93%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHA
Sbjct: 4   TVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHA 63

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+
Sbjct: 64  LDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGE 123

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           MG+SLPG+QARLMSQALRKLT+SISRS  +++FINQ+RMKIGVM
Sbjct: 124 MGDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKIGVM 167


>gi|112791552|gb|ABI22046.1| recombinase A [Erwinia amylovora]
          Length = 196

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 138/196 (70%), Positives = 170/196 (86%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  S  +L+FI
Sbjct: 61  ARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNSGTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSETRVKVVKNKVA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF I+YGEGI
Sbjct: 181 APFKQAEFQILYGEGI 196


>gi|291246127|gb|ADD85188.1| RecA [Borrelia recurrentis]
          Length = 202

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 127/197 (64%), Positives = 168/197 (85%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + +E + SG + LD A+GIGG+P+GR+VEI+GPESSGKTTL L  IA+ QKTGG  AF+D
Sbjct: 2   KYLESIPSGFILLDEAIGIGGYPRGRVVEIFGPESSGKTTLTLQAIAEIQKTGGIAAFID 61

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD +YAR LGV++  L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAAL P+AE
Sbjct: 62  AEHALDPVYARALGVNINELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALMPQAE 121

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           I+G+MG++  G+QARLMS+ALRK+T+ +S+S   ++FINQ+RMKIG++FGSPETTTGGNA
Sbjct: 122 IDGEMGDTQIGLQARLMSKALRKITAILSKSNACIMFINQIRMKIGLVFGSPETTTGGNA 181

Query: 223 LKFYSSVRLDIRRVGSI 239
           LKFYSS+RL++R+V  +
Sbjct: 182 LKFYSSLRLEVRKVEQV 198


>gi|291246113|gb|ADD85181.1| RecA [Borrelia recurrentis]
 gi|291246125|gb|ADD85187.1| RecA [Borrelia recurrentis]
          Length = 201

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 127/197 (64%), Positives = 168/197 (85%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + +E + SG + LD A+GIGG+P+GR+VEI+GPESSGKTTL L  IA+ QKTGG  AF+D
Sbjct: 2   KYLESIPSGFILLDEAIGIGGYPRGRVVEIFGPESSGKTTLTLQAIAEIQKTGGIAAFID 61

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD +YAR LGV++  L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAAL P+AE
Sbjct: 62  AEHALDPVYARALGVNINELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALMPQAE 121

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           I+G+MG++  G+QARLMS+ALRK+T+ +S+S   ++FINQ+RMKIG++FGSPETTTGGNA
Sbjct: 122 IDGEMGDTQIGLQARLMSKALRKITAILSKSNACIMFINQIRMKIGLVFGSPETTTGGNA 181

Query: 223 LKFYSSVRLDIRRVGSI 239
           LKFYSS+RL++R+V  +
Sbjct: 182 LKFYSSLRLEVRKVEQV 198


>gi|18076833|emb|CAC87583.1| recA protein [Pseudomonas aeruginosa]
          Length = 199

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 139/199 (69%), Positives = 174/199 (87%)

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AV
Sbjct: 1   VIAEAQKQGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAV 60

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+I++DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T +I  + C+++FINQ+RMK
Sbjct: 61  DVIIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK++ PF+Q 
Sbjct: 121 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVSPPFRQA 180

Query: 267 EFDIMYGEGISFFGELIDL 285
           EF I+YG+GI   GE+IDL
Sbjct: 181 EFQILYGKGIYRTGEIIDL 199


>gi|213012472|gb|ACJ38802.1| recombination-repair protein [Vibrio sp. R-664]
          Length = 197

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 136/197 (69%), Positives = 171/197 (86%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G TCA++DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQREGKTCAYIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMYG 273
           NK+A+PFK+    IMYG
Sbjct: 181 NKIAAPFKEANTQIMYG 197


>gi|213012386|gb|ACJ38759.1| recombination-repair protein [Vibrio campbellii]
 gi|213012390|gb|ACJ38761.1| recombination-repair protein [Vibrio sp. R-608]
 gi|213012392|gb|ACJ38762.1| recombination-repair protein [Vibrio campbellii]
 gi|213012394|gb|ACJ38763.1| recombination-repair protein [Vibrio sp. R-610]
 gi|213012396|gb|ACJ38764.1| recombination-repair protein [Vibrio campbellii]
 gi|213012398|gb|ACJ38765.1| recombination-repair protein [Vibrio sp. R-613]
 gi|213012410|gb|ACJ38771.1| recombination-repair protein [Vibrio sp. R-620]
 gi|213012412|gb|ACJ38772.1| recombination-repair protein [Vibrio harveyi]
 gi|213012414|gb|ACJ38773.1| recombination-repair protein [Vibrio harveyi]
 gi|213012416|gb|ACJ38774.1| recombination-repair protein [Vibrio alginolyticus]
 gi|213012422|gb|ACJ38777.1| recombination-repair protein [Vibrio sp. R-628]
 gi|213012424|gb|ACJ38778.1| recombination-repair protein [Vibrio sp. R-630]
 gi|213012426|gb|ACJ38779.1| recombination-repair protein [Vibrio sp. R-631]
 gi|213012428|gb|ACJ38780.1| recombination-repair protein [Vibrio sp. R-632]
 gi|213012430|gb|ACJ38781.1| recombination-repair protein [Vibrio sp. R-634]
 gi|213012434|gb|ACJ38783.1| recombination-repair protein [Vibrio campbellii]
 gi|213012446|gb|ACJ38789.1| recombination-repair protein [Vibrio campbellii]
 gi|213012448|gb|ACJ38790.1| recombination-repair protein [Vibrio sp. R-647]
 gi|213012454|gb|ACJ38793.1| recombination-repair protein [Vibrio sp. R-650]
 gi|213012468|gb|ACJ38800.1| recombination-repair protein [Vibrio harveyi]
 gi|213012474|gb|ACJ38803.1| recombination-repair protein [Vibrio alginolyticus]
 gi|213012476|gb|ACJ38804.1| recombination-repair protein [Vibrio alginolyticus]
 gi|213012486|gb|ACJ38809.1| recombination-repair protein [Vibrio sp. R-671]
 gi|213012504|gb|ACJ38818.1| recombination-repair protein [Vibrio sp. R-681]
 gi|213012516|gb|ACJ38824.1| recombination-repair protein [Vibrio sp. R-687]
 gi|213012518|gb|ACJ38825.1| recombination-repair protein [Vibrio harveyi]
 gi|213012520|gb|ACJ38826.1| recombination-repair protein [Vibrio harveyi]
 gi|213012522|gb|ACJ38827.1| recombination-repair protein [Vibrio sp. R-691]
 gi|213012524|gb|ACJ38828.1| recombination-repair protein [Vibrio harveyi]
 gi|213012526|gb|ACJ38829.1| recombination-repair protein [Vibrio harveyi]
 gi|213012528|gb|ACJ38830.1| recombination-repair protein [Vibrio harveyi]
 gi|213012530|gb|ACJ38831.1| recombination-repair protein [Vibrio sp. R-695]
 gi|213012532|gb|ACJ38832.1| recombination-repair protein [Vibrio sp. R-696]
 gi|213012534|gb|ACJ38833.1| recombination-repair protein [Vibrio sp. R-697]
 gi|213012542|gb|ACJ38837.1| recombination-repair protein [Vibrio communis]
 gi|213012544|gb|ACJ38838.1| recombination-repair protein [Vibrio ponticus]
 gi|213012550|gb|ACJ38841.1| recombination-repair protein [Vibrio campbellii]
 gi|213012554|gb|ACJ38843.1| recombination-repair protein [Vibrio campbellii]
 gi|213012562|gb|ACJ38847.1| recombination-repair protein [Vibrio harveyi]
 gi|213012572|gb|ACJ38852.1| recombination-repair protein [Vibrio sp. R-725]
 gi|213012574|gb|ACJ38853.1| recombination-repair protein [Vibrio sp. R-726]
          Length = 197

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 137/197 (69%), Positives = 171/197 (86%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMYG 273
           NK+A+PFK+    IMYG
Sbjct: 181 NKIAAPFKEANTQIMYG 197


>gi|16612099|gb|AAL27453.1| RecA [Burkholderia cepacia]
          Length = 172

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 124/173 (71%), Positives = 149/173 (86%), Gaps = 1/173 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARL+SQ
Sbjct: 120 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLVSQ 172


>gi|193090239|gb|ACF15291.1| recombination protein A [Rhizobium huautlense]
          Length = 167

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 141/167 (84%), Positives = 157/167 (94%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDA
Sbjct: 1   EIETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEI
Sbjct: 61  EHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           EG+MG+SLPG+QARLMSQALRKLT+SISRS C+++FINQ+RMKIGVM
Sbjct: 121 EGEMGDSLPGLQARLMSQALRKLTASISRSNCMVIFINQIRMKIGVM 167


>gi|157092520|gb|ABV22070.1| recombination protein A [Rhizobium mesosinicum]
          Length = 168

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 135/167 (80%), Positives = 153/167 (91%), Gaps = 1/167 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LGS  SI E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TI
Sbjct: 3   KGSVMKLGSNESIVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 61

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 62  AEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDV 121

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           +V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S  
Sbjct: 122 LVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNT 168


>gi|193090247|gb|ACF15295.1| recombination protein A [Rhizobium sp. CCBAU 65751]
          Length = 167

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 140/167 (83%), Positives = 158/167 (94%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDA
Sbjct: 1   EIETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEI
Sbjct: 61  EHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           EG+MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 121 EGEMGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 167


>gi|68637427|emb|CAF21817.1| recombinase A [Weissella kandleri]
          Length = 190

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 127/190 (66%), Positives = 158/190 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E  S+GSL LDIALGIGG+PKGRI+EIYGPESSGKTTLALH  A+ Q  GGT A+VDA
Sbjct: 1   KVESFSTGSLKLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAAAEVQAEGGTVAYVDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+A+D  YAR LGV + +LL+SQPDTGEQ L I + L++SGAVD+IVIDSVAALTP+AEI
Sbjct: 61  ENAMDVEYARNLGVKVDDLLLSQPDTGEQGLSIAEELIKSGAVDLIVIDSVAALTPKAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           +G +G++  G+QAR+MS ALRKL+ +I +    ++FINQ+R KIGVMFG+PETT GG AL
Sbjct: 121 DGAIGDTTVGLQARMMSSALRKLSGAILKMGTTVIFINQLREKIGVMFGNPETTPGGRAL 180

Query: 224 KFYSSVRLDI 233
           KFYS+VRLD+
Sbjct: 181 KFYSTVRLDV 190


>gi|213012558|gb|ACJ38845.1| recombination-repair protein [Vibrio cincinnatiensis]
          Length = 197

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 142/197 (72%), Positives = 171/197 (86%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAF+DAEHALD IYARKLGV++  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLECIAAAQKNGKTCAFIDAEHALDPIYARKLGVNIDELLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QARL+SQ++RK+T ++  S C+
Sbjct: 61  CDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARLLSQSMRKMTGNLKASNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMYG 273
           NK+A+PFKQ E  I+YG
Sbjct: 181 NKIAAPFKQAETQILYG 197


>gi|289172336|emb|CAX48569.1| recA protein [Aeromonas aquariorum]
          Length = 178

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 139/178 (78%), Positives = 159/178 (89%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SL LD+ALGIGG P GRIVEIYGPESSGKTTL L  IA++QK G TCAFVDAEHALD IY
Sbjct: 1   SLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDAEHALDPIY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIEG+MG+S 
Sbjct: 61  AAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
            G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNALKFY+SV
Sbjct: 121 VGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASV 178


>gi|112791492|gb|ABI22016.1| recombinase A [Enterobacter cloacae subsp. dissolvens]
          Length = 196

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 138/196 (70%), Positives = 172/196 (87%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FI
Sbjct: 61  ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF I+YGEGI
Sbjct: 181 APFKQAEFQILYGEGI 196


>gi|213950726|gb|ACJ54608.1| recombination protein A [Mesorhizobium sp. CCBAU 41182]
          Length = 163

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 129/164 (78%), Positives = 151/164 (92%), Gaps = 1/164 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A
Sbjct: 1   GSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           ++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++
Sbjct: 60  EAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVL 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           V+DSVAALTPRAEIEG+MG++LPG+QARLMSQALRKLT+SISRS
Sbjct: 120 VVDSVAALTPRAEIEGEMGDALPGLQARLMSQALRKLTASISRS 163


>gi|158631778|gb|ABW74994.1| RecA [Mesorhizobium sp. CCBAU 83282]
          Length = 169

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 134/164 (81%), Positives = 154/164 (93%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHA
Sbjct: 6   TVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHA 65

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+
Sbjct: 66  LDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGE 125

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           MG+SLPG+QARLMSQALRKLT+SISRS  +++FINQ+RMKIGVM
Sbjct: 126 MGDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKIGVM 169


>gi|112791498|gb|ABI22019.1| recombinase A [Escherichia coli DSM 30083]
 gi|112791500|gb|ABI22020.1| recombinase A [Shigella dysenteriae]
          Length = 196

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 139/196 (70%), Positives = 172/196 (87%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FI
Sbjct: 61  ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF I+YGEGI
Sbjct: 181 APFKQAEFQILYGEGI 196


>gi|289812923|gb|ADD20922.1| recombinase A [Rhizobium leguminosarum]
          Length = 164

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 132/164 (80%), Positives = 154/164 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSLGLDIALG+GG P+GRI+E+YGPESSGKTTLAL TIA++QK GG CAFVDA
Sbjct: 1   EIETISTGSLGLDIALGVGGLPRGRIIEMYGPESSGKTTLALQTIAEAQKKGGICAFVDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEI
Sbjct: 61  EHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           EG+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKI
Sbjct: 121 EGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKI 164


>gi|207080811|gb|ACI22749.1| RecA [Rhizobium sp. J3-AN56]
          Length = 162

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 130/163 (79%), Positives = 151/163 (92%), Gaps = 1/163 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG+  S+ E +E VS+GSL LDIALGIGG PKGRI+E+YGPESSGKTTLAL 
Sbjct: 1   FGKGSVMKLGANESVVE-VETVSTGSLSLDIALGIGGLPKGRIIEVYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+
Sbjct: 60  TIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           D++V+DSVAALTPRAEIEG+MG+SLPGMQARLMSQALRKLT+S
Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 162


>gi|158631780|gb|ABW74995.1| RecA [Mesorhizobium septentrionale]
          Length = 169

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 133/164 (81%), Positives = 154/164 (93%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHA
Sbjct: 6   TVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHA 65

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+
Sbjct: 66  LDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGE 125

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           MG+SLPG+QARLMSQALRKLT+SISRS  +++FINQ+RMK+GVM
Sbjct: 126 MGDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKVGVM 169


>gi|296516850|emb|CBM35910.1| recombination protein A [Bradyrhizobium sp. CAH5]
          Length = 168

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 126/169 (74%), Positives = 149/169 (88%), Gaps = 1/169 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG        IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  
Sbjct: 120 DVMVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNT 168


>gi|72161207|ref|YP_288864.1| DNA recombination protein RecAprecursor [Thermobifida fusca YX]
 gi|71914939|gb|AAZ54841.1| DNA recombination protein RecA precursor [Thermobifida fusca YX]
          Length = 1177

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 89/227 (39%), Positives = 131/227 (57%), Gaps = 7/227 (3%)

Query: 114  KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
            + G D ++LL   P    + LE+    V      +++       +   E    +   +  
Sbjct: 913  QQGADARSLLEFTPAATVRFLELVAPYVPESMSSMLLAQFRGRCSVTPEYSDPVQRLVAA 972

Query: 174  MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS-PETTTGGNALKFYSSVRLD 232
                +      ++    +R   I V  N      GVM  + PETT+GG ALKFY+SVR+D
Sbjct: 973  PVLDI------QVKPGSTRKFDIEVEGNHNYFVDGVMVHNSPETTSGGRALKFYASVRMD 1026

Query: 233  IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
            +RR+ ++KD     GN+TRVKVVKNK+A PFKQ EFDI+YG GIS  G L+DLGV+  IV
Sbjct: 1027 VRRIETLKDGTEAVGNRTRVKVVKNKLAPPFKQAEFDILYGVGISREGGLLDLGVEHGIV 1086

Query: 293  DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
             KSGAW++++G +LGQG+EN++ FLR N ++A+ IE  ++Q  G+  
Sbjct: 1087 RKSGAWYTYEGTQLGQGKENARNFLRANPDMADEIEKRIKQKLGIPT 1133



 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 91/141 (64%), Positives = 114/141 (80%)

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           S  TT+ALH +A +Q+ GG  AF+DAEHALD  YA K+GV++ +LL+SQPDTGEQALEI 
Sbjct: 515 SHNTTVALHAVANAQRAGGIAAFIDAEHALDPSYAEKIGVNIDDLLLSQPDTGEQALEIV 574

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           DMLVRSGA+ IIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+  +++++K   
Sbjct: 575 DMLVRSGAISIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKIAGALNQTKTTA 634

Query: 198 VFINQMRMKIGVMFGSPETTT 218
           +FINQ+R K+GVMFG     T
Sbjct: 635 IFINQLREKVGVMFGCMHYDT 655



 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 45/75 (60%), Positives = 55/75 (73%), Gaps = 2/75 (2%)

Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           D+ KALE AL+QI+R +GKG IM+LG        IE + +GS+ LD+ALGIGG P+GRI
Sbjct: 27 SDRDKALETALAQIERQFGKGTIMRLGDDNR--PPIESIPTGSISLDVALGIGGIPRGRI 84

Query: 70 VEIYGPESSGKTTLA 84
          VEIYGPESSGK   A
Sbjct: 85 VEIYGPESSGKCLTA 99


>gi|324962822|gb|ADY62492.1| recombinase protein A [Mesorhizobium amorphae]
          Length = 158

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 121/155 (78%), Positives = 142/155 (91%), Gaps = 1/155 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALH
Sbjct: 5   FGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALH 63

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+
Sbjct: 64  TVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAI 123

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQ
Sbjct: 124 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQ 158


>gi|213012560|gb|ACJ38846.1| recombination-repair protein [Vibrio tubiashii]
          Length = 194

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 138/194 (71%), Positives = 168/194 (86%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAF DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLECIAAAQKQGKTCAFFDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDI 270
           NK+A+PFKQ E  I
Sbjct: 181 NKIAAPFKQAETQI 194


>gi|6694822|gb|AAF25407.1|AF214760_1 RecA protein [Arthrobacter sp. 'SMCC G954']
          Length = 194

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 134/194 (69%), Positives = 162/194 (83%)

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA KLGVD   LL+SQPD
Sbjct: 1   VVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPEYAAKLGVDTDALLVSQPD 60

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI DMLV SG++DI+VIDSVAAL PRAEIEGDMG+S  G+QARLMSQALRK+T 
Sbjct: 61  TGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKITG 120

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
            +S++K   +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+     GN
Sbjct: 121 RLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIQTLKEGADSVGN 180

Query: 249 QTRVKVVKNKMASP 262
           +T+ K+VKNKMA P
Sbjct: 181 RTKAKIVKNKMAPP 194


>gi|112791522|gb|ABI22031.1| recombinase A [Brenneria salicis ATCC 15712]
          Length = 196

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 139/196 (70%), Positives = 171/196 (87%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FI
Sbjct: 61  TRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D + G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEVVGSETRVKVVKNKVA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF I+YGEGI
Sbjct: 181 APFKQAEFQILYGEGI 196


>gi|16612106|gb|AAL27455.1| RecA [Burkholderia cepacia]
          Length = 175

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 127/176 (72%), Positives = 152/176 (86%), Gaps = 1/176 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           TGEQALEITD LVRSG++D+IVIDSVAAL P+A+IEG+MG+SLPG+QARLMSQALR
Sbjct: 120 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAKIEGEMGDSLPGLQARLMSQALR 175


>gi|307343402|emb|CBJ18142.1| recombinase A [Micromonospora sp. GUI61]
          Length = 180

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 131/180 (72%), Positives = 155/180 (86%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH++A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHSVASAQRLGGIAAFIDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDAMLVSQPDTGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
            G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRL
Sbjct: 121 VGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRL 180


>gi|207080803|gb|ACI22745.1| RecA [Rhizobium sp. J3-41]
          Length = 162

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 132/163 (80%), Positives = 151/163 (92%), Gaps = 1/163 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG+  S+ E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL 
Sbjct: 1   FGKGSVMKLGANESVVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG CAFVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+
Sbjct: 60  TIAEAQKKGGICAFVDAEHALDPIYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           D++V+DSVAALTPRAEIEG+MG+SLPGMQARLMSQALRKLT+S
Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 162


>gi|322510281|gb|ADX05526.1| recombination protein A [Sinorhizobium sp. CCBAU 05637]
          Length = 166

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 135/164 (82%), Positives = 154/164 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A++QK GG CAFVDA
Sbjct: 3   EIETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAEAQKKGGICAFVDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEI
Sbjct: 63  EHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           EG+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKI
Sbjct: 123 EGEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKI 166


>gi|199595082|gb|ACH91005.1| RecA [Stenotrophomonas maltophilia]
 gi|199595084|gb|ACH91006.1| RecA [Stenotrophomonas maltophilia]
 gi|301318414|gb|ADK67122.1| RecA protein [Stenotrophomonas maltophilia]
 gi|301318422|gb|ADK67126.1| RecA protein [Stenotrophomonas maltophilia]
          Length = 182

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 135/182 (74%), Positives = 156/182 (85%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +E + +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKLGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+V+DSVAALTP+AE
Sbjct: 61  AEHALDPIYAGKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVVDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS  ++VFINQ+R KIGVM    SPE TTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRHKIGVMMPGQSPEVTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|301318394|gb|ADK67112.1| RecA protein [Stenotrophomonas sp. DSM 2408]
 gi|301318398|gb|ADK67114.1| RecA protein [Stenotrophomonas koreensis]
          Length = 182

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 139/182 (76%), Positives = 159/182 (87%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +EVV +GSL LDIALGIGG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EQVEVVPTGSLMLDIALGIGGLPRGRVVEIYGPESSGKTTLTLQAIAECQKLGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+VIDSVAALTP+AE
Sbjct: 61  AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDIVVIDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS  ++VFINQ+RMKIGVM    SPETTTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPETTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|299480237|gb|ADJ18744.1| recombination protein RecA [Rhizobium sp. CCBAU 65643]
          Length = 166

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 137/165 (83%), Positives = 156/165 (94%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDA
Sbjct: 2   EIETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGV+L+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEI
Sbjct: 62  EHALDPVYARKLGVNLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEI 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           EG+MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIG
Sbjct: 122 EGEMGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 166


>gi|169883818|gb|ACA98005.1| recombination protein A [Mesorhizobium sp. CCBAU 01550]
 gi|169883820|gb|ACA98006.1| recombination protein A [Mesorhizobium sp. CCBAU 25300]
 gi|169883822|gb|ACA98007.1| recombination protein A [Mesorhizobium sp. CCBAU 45265]
 gi|169883824|gb|ACA98008.1| recombination protein A [Mesorhizobium sp. CCBAU 45272]
 gi|169883844|gb|ACA98018.1| recombination protein A [Mesorhizobium sp. CCBAU 25282]
          Length = 167

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 132/164 (80%), Positives = 154/164 (93%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHA
Sbjct: 4   TVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHA 63

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+
Sbjct: 64  LDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGE 123

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           MG++LPG+QARLMSQALRKLT+SISRS  +++FINQ+RMKIGVM
Sbjct: 124 MGDALPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKIGVM 167


>gi|29652001|gb|AAO87663.1| RecA [Listeria monocytogenes]
          Length = 175

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 119/177 (67%), Positives = 147/177 (83%), Gaps = 2/177 (1%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA+ 
Sbjct: 1   IMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEV 58

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRSGAVD++VI
Sbjct: 59  QAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLVI 118

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+R K+G
Sbjct: 119 DSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVG 175


>gi|163960900|gb|ABY49994.1| recombination protein A [Mesorhizobium mediterraneum]
          Length = 160

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 127/158 (80%), Positives = 146/158 (92%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDA
Sbjct: 3   EIETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLIS PDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEI
Sbjct: 63  EHALDPVYARKLGVDLENLLISHPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           EG+MG+SLPG+QARLMSQALRKLT+SISRS  +++FIN
Sbjct: 123 EGEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFIN 160


>gi|112791504|gb|ABI22022.1| recombinase A [Enterobacter pyrinus]
          Length = 195

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 137/195 (70%), Positives = 171/195 (87%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD++V+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FI
Sbjct: 61  ARSGAVDVLVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSETRVKVVKNKIA 180

Query: 261 SPFKQVEFDIMYGEG 275
           +PFKQ EF I+YGEG
Sbjct: 181 APFKQAEFPILYGEG 195


>gi|112791526|gb|ABI22033.1| recombinase A [Brenneria alni]
          Length = 196

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 138/196 (70%), Positives = 171/196 (87%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FI
Sbjct: 61  TRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ + + G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGEEVVGSETRVKVVKNKVA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF I+YGEGI
Sbjct: 181 APFKQAEFQILYGEGI 196


>gi|306517569|emb|CBO93080.1| DNA recombinase A [Pantoea agglomerans]
          Length = 181

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 133/180 (73%), Positives = 157/180 (87%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+K
Sbjct: 2   LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIASAQRKGKTCAFIDAEHALDPVYAKK 61

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           LGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+
Sbjct: 62  LGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGL 121

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
            AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIR
Sbjct: 122 AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR 181


>gi|157092518|gb|ABV22069.1| recombination protein A [Rhizobium mesosinicum]
          Length = 168

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 135/167 (80%), Positives = 153/167 (91%), Gaps = 1/167 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LGS  +I E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TI
Sbjct: 3   KGSVMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 61

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 62  AEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDV 121

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           +V+DSVAALTPRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S  
Sbjct: 122 LVVDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNT 168


>gi|199595028|gb|ACH90978.1| RecA [Stenotrophomonas maltophilia]
 gi|199595080|gb|ACH91004.1| RecA [Stenotrophomonas maltophilia]
 gi|199595086|gb|ACH91007.1| RecA [Stenotrophomonas maltophilia]
 gi|301318408|gb|ADK67119.1| RecA protein [Stenotrophomonas maltophilia]
 gi|301318410|gb|ADK67120.1| RecA protein [Stenotrophomonas maltophilia]
 gi|301318412|gb|ADK67121.1| RecA protein [Stenotrophomonas maltophilia]
 gi|301318416|gb|ADK67123.1| RecA protein [Stenotrophomonas maltophilia]
 gi|301318420|gb|ADK67125.1| RecA protein [Stenotrophomonas maltophilia]
 gi|301318428|gb|ADK67129.1| RecA protein [Stenotrophomonas maltophilia]
          Length = 182

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 136/182 (74%), Positives = 157/182 (86%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +E + +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKLGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+V+DSVAALTP+AE
Sbjct: 61  AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVVDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS  ++VFINQ+RMKIGVM    SPE TTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPEVTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|307343352|emb|CBJ18117.1| recombinase A [Micromonospora peucetia]
          Length = 179

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 129/179 (72%), Positives = 152/179 (84%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHALD  Y
Sbjct: 1   SIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHALDPDY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDALLVSQPDTGEQALEIVDMLVRSGAIDVIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
            G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALK Y+SVR
Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYASVR 179


>gi|322510283|gb|ADX05527.1| recombination protein A [Sinorhizobium sp. CCBAU 05591]
          Length = 168

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 138/167 (82%), Positives = 157/167 (94%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A++QK GG CAFVDA
Sbjct: 2   EIETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAEAQKKGGICAFVDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEI
Sbjct: 62  EHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEI 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           EG+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 122 EGEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 168


>gi|199594980|gb|ACH90954.1| RecA [Stenotrophomonas maltophilia]
 gi|199595020|gb|ACH90974.1| RecA [Stenotrophomonas maltophilia]
 gi|199595044|gb|ACH90986.1| RecA [Stenotrophomonas maltophilia]
          Length = 182

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 137/182 (75%), Positives = 158/182 (86%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +E + +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKLGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+VIDSVAALTP+AE
Sbjct: 61  AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVIDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS  +++FINQ+RMKIGVM    SPETTTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPETTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|16612109|gb|AAL27456.1| RecA [Burkholderia cepacia]
          Length = 175

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 128/176 (72%), Positives = 151/176 (85%), Gaps = 1/176 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM+ G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRTGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           TGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR
Sbjct: 120 TGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 175


>gi|112791524|gb|ABI22032.1| recombinase A [Brenneria rubrifaciens]
          Length = 196

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 138/196 (70%), Positives = 171/196 (87%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FI
Sbjct: 61  TRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ + + G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGEEVVGSETRVKVVKNKVA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF I+YGEGI
Sbjct: 181 APFKQAEFQILYGEGI 196


>gi|193090231|gb|ACF15287.1| recombination protein A [Rhizobium leguminosarum]
          Length = 166

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 130/167 (77%), Positives = 154/167 (92%), Gaps = 1/167 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA+
Sbjct: 1   SVMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V
Sbjct: 60  AQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           +DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S  ++
Sbjct: 120 VDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNTMV 166


>gi|324962814|gb|ADY62488.1| recombinase protein A [Mesorhizobium sp. CCNWSX622]
 gi|324962824|gb|ADY62493.1| recombinase protein A [Mesorhizobium alhagi]
          Length = 154

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 123/155 (79%), Positives = 142/155 (91%), Gaps = 1/155 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG+   I E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALH
Sbjct: 1   FGKGSIMRLGANEKIVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQ
Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQ 154


>gi|199595038|gb|ACH90983.1| RecA [Stenotrophomonas acidaminiphila]
          Length = 182

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 137/182 (75%), Positives = 158/182 (86%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +E + +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKQGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+VIDSVAALTP+AE
Sbjct: 61  AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVIDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS  +++FINQ+RMKIGVM    SPETTTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPETTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|50982233|gb|AAT91782.1| recombination protein A [Bradyrhizobium elkanii]
 gi|50982235|gb|AAT91783.1| recombination protein A [Bradyrhizobium elkanii]
 gi|50982247|gb|AAT91789.1| recombination protein A [Bradyrhizobium elkanii]
 gi|190612016|gb|ACE80442.1| recombination protein A [Bradyrhizobium elkanii]
 gi|190612020|gb|ACE80444.1| recombination protein A [Bradyrhizobium elkanii]
 gi|190612024|gb|ACE80446.1| recombination protein A [Bradyrhizobium elkanii]
 gi|190612026|gb|ACE80447.1| recombination protein A [Bradyrhizobium elkanii]
 gi|190612030|gb|ACE80449.1| recombination protein A [Bradyrhizobium elkanii]
 gi|190612032|gb|ACE80450.1| recombination protein A [Bradyrhizobium elkanii]
 gi|190612034|gb|ACE80451.1| recombination protein A [Bradyrhizobium elkanii]
 gi|190612036|gb|ACE80452.1| recombination protein A [Bradyrhizobium elkanii]
          Length = 170

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 124/171 (72%), Positives = 150/171 (87%), Gaps = 1/171 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG        +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ Q
Sbjct: 1   MKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+D
Sbjct: 60  KKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           SVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 120 SVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSHTMVIFINQI 170


>gi|306517571|emb|CBO93082.1| DNA recombinase A [Pantoea agglomerans]
          Length = 180

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 133/180 (73%), Positives = 157/180 (87%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+K
Sbjct: 1   LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIASAQRKGKTCAFIDAEHALDPVYAKK 60

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           LGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+
Sbjct: 61  LGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGL 120

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
            AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIR
Sbjct: 121 AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR 180


>gi|299152213|gb|ADJ18196.1| recombinase A [Bradyrhizobium jicamae]
          Length = 176

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 123/165 (74%), Positives = 150/165 (90%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE VS+GSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALH +A+ Q+ GG CAF+DA
Sbjct: 9   DIETVSTGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHCVAEGQRKGGICAFIDA 68

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGA+D++V+DSVAAL P+AE+
Sbjct: 69  EHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALVPKAEL 128

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIG
Sbjct: 129 EGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIG 173


>gi|226973215|gb|ACO95150.1| recombinase A [Bradyrhizobium sp. RSB6]
          Length = 170

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 122/171 (71%), Positives = 150/171 (87%), Gaps = 1/171 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G++M+LG        +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A
Sbjct: 1   GSVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGA+D++
Sbjct: 60  EGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAIDVL 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FI
Sbjct: 120 VVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFI 170


>gi|199595066|gb|ACH90997.1| RecA [Stenotrophomonas maltophilia]
          Length = 182

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 136/182 (74%), Positives = 158/182 (86%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +E + +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKLGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+V+DSVAALTP+AE
Sbjct: 61  AEHALDPIYAGKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVVDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS  +++FINQ+RMKIGVM    SPETTTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPETTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|199595012|gb|ACH90970.1| RecA [Stenotrophomonas maltophilia]
 gi|199595016|gb|ACH90972.1| RecA [Stenotrophomonas maltophilia]
 gi|199595048|gb|ACH90988.1| RecA [Stenotrophomonas maltophilia]
 gi|199595058|gb|ACH90993.1| RecA [Stenotrophomonas maltophilia]
          Length = 182

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 136/182 (74%), Positives = 158/182 (86%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +E + +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKMGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+V+DSVAALTP+AE
Sbjct: 61  AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVVDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS  +++FINQ+RMKIGVM    SPETTTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPETTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|307343348|emb|CBJ18115.1| recombinase A [Micromonospora pallida]
          Length = 178

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 128/178 (71%), Positives = 152/178 (85%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           + LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA
Sbjct: 1   IALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           + LGVD   LL+SQPDTGEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S  
Sbjct: 61  KALGVDTDALLVSQPDTGEQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHV 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
           G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR
Sbjct: 121 GLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVR 178


>gi|199595056|gb|ACH90992.1| RecA [Stenotrophomonas maltophilia]
 gi|199595088|gb|ACH91008.1| RecA [Stenotrophomonas maltophilia]
 gi|199595090|gb|ACH91009.1| RecA [Stenotrophomonas maltophilia]
          Length = 182

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 138/182 (75%), Positives = 158/182 (86%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +E + +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKLGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+VIDSVAALTP+AE
Sbjct: 61  AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVIDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS  ++VFINQ+RMKIGVM    SPETTTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPETTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|158631768|gb|ABW74989.1| RecA [Mesorhizobium gobiense]
          Length = 161

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 132/161 (81%), Positives = 152/161 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHAL
Sbjct: 1   VPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+M
Sbjct: 61  DPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+SLPG+QARLMSQALRKLT+SISRS  +++FINQ+RMKIG
Sbjct: 121 GDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKIG 161


>gi|213012538|gb|ACJ38835.1| recombination-repair protein [Vibrio sp. R-700]
          Length = 197

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 136/196 (69%), Positives = 170/196 (86%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMY 272
           NK+A+PFK+    IMY
Sbjct: 181 NKIAAPFKEANTQIMY 196


>gi|207080821|gb|ACI22754.1| RecA [Rhizobium sp. J3-AN18]
          Length = 161

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 131/162 (80%), Positives = 150/162 (92%), Gaps = 1/162 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG+  S+ E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL 
Sbjct: 1   FGKGSVMKLGANESVVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG CAFVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+
Sbjct: 60  TIAEAQKKGGICAFVDAEHALDPIYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           D++V+DSVAALTPRAEIEG+MG+SLPGMQARLMSQALRKLT+
Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRKLTA 161


>gi|33087875|gb|AAP93068.1| recombination protein A [Yersinia rohdei]
          Length = 159

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 110/160 (68%), Positives = 133/160 (83%), Gaps = 2/160 (1%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKT
Sbjct: 1   QIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 58

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L 
Sbjct: 59  TLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALT 118

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQ
Sbjct: 119 RSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 158


>gi|306517573|emb|CBO93083.1| DNA recombinase A [Pantoea agglomerans]
          Length = 183

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 133/180 (73%), Positives = 157/180 (87%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+K
Sbjct: 1   LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIASAQRKGKTCAFIDAEHALDPVYAKK 60

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           LGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+
Sbjct: 61  LGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGL 120

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
            AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIR
Sbjct: 121 AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR 180


>gi|112791508|gb|ABI22024.1| recombinase A [Pectobacterium atrosepticum]
 gi|112791512|gb|ABI22026.1| recombinase A [Pectobacterium carotovorum]
 gi|112791516|gb|ABI22028.1| recombinase A [Pectobacterium betavasculorum]
 gi|239586339|gb|ACR83544.1| recombinase A [Pectobacterium carotovorum]
          Length = 196

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 137/196 (69%), Positives = 170/196 (86%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FI
Sbjct: 61  TRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF I+YGEGI
Sbjct: 181 APFKQAEFQILYGEGI 196


>gi|213012540|gb|ACJ38836.1| recombination-repair protein [Vibrio sinaloensis]
          Length = 194

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 140/194 (72%), Positives = 169/194 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDI 270
           NK+A+PFKQ E  I
Sbjct: 181 NKIAAPFKQAETQI 194


>gi|158631770|gb|ABW74990.1| RecA [Mesorhizobium tarimense]
          Length = 164

 Score =  180 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 132/161 (81%), Positives = 152/161 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHAL
Sbjct: 1   VPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+M
Sbjct: 61  DPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+SLPG+QARLMSQALRKLT+SISRS  +++FINQ+RMKIG
Sbjct: 121 GDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKIG 161


>gi|18076871|emb|CAC87602.1| recA protein [Pseudomonas stutzeri]
          Length = 199

 Score =  180 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 141/199 (70%), Positives = 174/199 (87%)

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AV
Sbjct: 1   VIAEAQKMGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAV 60

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+I++DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T +I  + C+++FINQ+RMK
Sbjct: 61  DVIIVDSVAALVPKAEIEGEMGDTHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q 
Sbjct: 121 IGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQA 180

Query: 267 EFDIMYGEGISFFGELIDL 285
           EF I+YG+GI   GE+IDL
Sbjct: 181 EFQILYGKGIYRNGEVIDL 199


>gi|23194271|gb|AAN15083.1| RecA protein [Vibrio cholerae]
          Length = 197

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 137/197 (69%), Positives = 171/197 (86%)

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALE
Sbjct: 1   ESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALE 60

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C
Sbjct: 61  ICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 120

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVV
Sbjct: 121 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVV 180

Query: 256 KNKMASPFKQVEFDIMY 272
           KNK+A+PFK+    IMY
Sbjct: 181 KNKIAAPFKEANTQIMY 197


>gi|213012312|gb|ACJ38722.1| recombination-repair protein [Vibrio alginolyticus]
          Length = 197

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 134/197 (68%), Positives = 168/197 (85%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G T   +DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQREGKTWCVIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMYG 273
           NK+A+PFK+    IMYG
Sbjct: 181 NKIAAPFKEANTQIMYG 197


>gi|306517567|emb|CBO93079.1| DNA recombinase A [Pantoea agglomerans]
          Length = 185

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 133/180 (73%), Positives = 158/180 (87%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+K
Sbjct: 3   LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIASAQRKGKTCAFIDAEHALDPVYAKK 62

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           LGVD++NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+
Sbjct: 63  LGVDIENLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGL 122

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
            AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIR
Sbjct: 123 AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR 182


>gi|306517553|emb|CBO93066.1| DNA recombinase A [Pantoea stewartii subsp. stewartii]
          Length = 183

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 133/183 (72%), Positives = 159/183 (86%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LDIALG GG P GRIVEIYGPE+SGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+K
Sbjct: 1   LDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKK 60

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           LGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+
Sbjct: 61  LGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGL 120

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
            AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIR
Sbjct: 121 AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR 180

Query: 235 RVG 237
            +G
Sbjct: 181 GIG 183


>gi|112791528|gb|ABI22034.1| recombinase A [Brenneria nigrifluens]
          Length = 195

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 138/195 (70%), Positives = 170/195 (87%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L 
Sbjct: 1   TLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALT 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FIN
Sbjct: 61  RSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFIN 120

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D + G++TRVKVVKNK+A+
Sbjct: 121 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEVVGSETRVKVVKNKVAA 180

Query: 262 PFKQVEFDIMYGEGI 276
           PFKQ EF I+YGEGI
Sbjct: 181 PFKQAEFQILYGEGI 195


>gi|199594952|gb|ACH90940.1| RecA [Stenotrophomonas maltophilia]
 gi|199594954|gb|ACH90941.1| RecA [Stenotrophomonas maltophilia]
 gi|199594956|gb|ACH90942.1| RecA [Stenotrophomonas maltophilia]
 gi|199594958|gb|ACH90943.1| RecA [Stenotrophomonas maltophilia]
 gi|199594960|gb|ACH90944.1| RecA [Stenotrophomonas maltophilia]
 gi|199594962|gb|ACH90945.1| RecA [Stenotrophomonas maltophilia]
 gi|199594964|gb|ACH90946.1| RecA [Stenotrophomonas maltophilia]
 gi|199594966|gb|ACH90947.1| RecA [Stenotrophomonas maltophilia]
 gi|199594968|gb|ACH90948.1| RecA [Stenotrophomonas maltophilia]
 gi|199594970|gb|ACH90949.1| RecA [Stenotrophomonas maltophilia]
 gi|199594974|gb|ACH90951.1| RecA [Stenotrophomonas maltophilia]
 gi|199594976|gb|ACH90952.1| RecA [Stenotrophomonas maltophilia]
 gi|199594978|gb|ACH90953.1| RecA [Stenotrophomonas maltophilia]
 gi|199594982|gb|ACH90955.1| RecA [Stenotrophomonas maltophilia]
 gi|199594984|gb|ACH90956.1| RecA [Stenotrophomonas maltophilia]
 gi|199594986|gb|ACH90957.1| RecA [Stenotrophomonas maltophilia]
 gi|199594988|gb|ACH90958.1| RecA [Stenotrophomonas maltophilia]
 gi|199594990|gb|ACH90959.1| RecA [Stenotrophomonas maltophilia]
 gi|199594992|gb|ACH90960.1| RecA [Stenotrophomonas maltophilia]
 gi|199594994|gb|ACH90961.1| RecA [Stenotrophomonas maltophilia]
 gi|199594996|gb|ACH90962.1| RecA [Stenotrophomonas maltophilia]
 gi|199594998|gb|ACH90963.1| RecA [Stenotrophomonas maltophilia]
 gi|199595000|gb|ACH90964.1| RecA [Stenotrophomonas maltophilia]
 gi|199595002|gb|ACH90965.1| RecA [Stenotrophomonas maltophilia]
 gi|199595010|gb|ACH90969.1| RecA [Stenotrophomonas maltophilia]
 gi|199595014|gb|ACH90971.1| RecA [Stenotrophomonas maltophilia]
 gi|199595026|gb|ACH90977.1| RecA [Stenotrophomonas maltophilia]
 gi|199595032|gb|ACH90980.1| RecA [Stenotrophomonas maltophilia]
 gi|199595036|gb|ACH90982.1| RecA [Stenotrophomonas nitritireducens]
 gi|199595040|gb|ACH90984.1| RecA [Stenotrophomonas maltophilia]
 gi|199595042|gb|ACH90985.1| RecA [Stenotrophomonas maltophilia]
 gi|199595046|gb|ACH90987.1| RecA [Stenotrophomonas maltophilia]
 gi|199595070|gb|ACH90999.1| RecA [Stenotrophomonas maltophilia]
          Length = 182

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 137/182 (75%), Positives = 158/182 (86%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +E + +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKMGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+VIDSVAALTP+AE
Sbjct: 61  AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVIDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS  +++FINQ+RMKIGVM    SPETTTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPETTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|213950728|gb|ACJ54609.1| recombination protein A [Rhizobium sp. CCBAU 41184]
          Length = 173

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 137/166 (82%), Positives = 154/166 (92%), Gaps = 1/166 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LGS  SI E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TI
Sbjct: 3   KGSIMKLGSNESIVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 61

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 62  AEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDV 121

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           +V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+SK
Sbjct: 122 LVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSK 167


>gi|315360831|gb|ADU05389.1| recombination protein A [Ensifer adhaerens]
          Length = 166

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 135/167 (80%), Positives = 154/167 (92%), Gaps = 1/167 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG + SI E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL 
Sbjct: 1   FGKGSMMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+
Sbjct: 60  TVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S
Sbjct: 120 DVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 166


>gi|112791548|gb|ABI22044.1| recombinase A [Erwinia rhapontici]
          Length = 194

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 136/194 (70%), Positives = 168/194 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L R
Sbjct: 1   LTLQVIASAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ
Sbjct: 61  SGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNSGTLLIFINQ 120

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A+P
Sbjct: 121 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSETRVKVVKNKIAAP 180

Query: 263 FKQVEFDIMYGEGI 276
           FKQ EF I+YGEGI
Sbjct: 181 FKQAEFQILYGEGI 194


>gi|213012304|gb|ACJ38718.1| recombination-repair protein [Vibrio alginolyticus]
 gi|213012384|gb|ACJ38758.1| recombination-repair protein [Vibrio sp. R-600]
 gi|213012404|gb|ACJ38768.1| recombination-repair protein [Vibrio sp. R-617]
 gi|213012432|gb|ACJ38782.1| recombination-repair protein [Vibrio alginolyticus]
 gi|213012500|gb|ACJ38816.1| recombination-repair protein [Vibrio sp. R-679]
          Length = 196

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 136/196 (69%), Positives = 170/196 (86%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMY 272
           NK+A+PFK+    IMY
Sbjct: 181 NKIAAPFKEANTQIMY 196


>gi|118405789|gb|ABK81260.1| recombinase A [Azotobacter beijerinckii]
          Length = 197

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 139/194 (71%), Positives = 170/194 (87%)

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++
Sbjct: 4   QKQGATCAFVDAEHALDPDYAAKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIV 63

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMF
Sbjct: 64  DSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMF 123

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETTTGGNALKFY+SVRLDIRR G++KD D + G++TRVKVVKNK+A PF+Q EF I+
Sbjct: 124 GNPETTTGGNALKFYASVRLDIRRTGAVKDSDEVVGSETRVKVVKNKVAPPFRQAEFQIL 183

Query: 272 YGEGISFFGELIDL 285
           YG+GI   GE+IDL
Sbjct: 184 YGKGIYRNGEIIDL 197


>gi|112791518|gb|ABI22029.1| recombinase A [Pectobacterium cacticida]
          Length = 196

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 137/196 (69%), Positives = 170/196 (86%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FI
Sbjct: 61  TRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVIGSETRVKVVKNKVA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF I+YGEGI
Sbjct: 181 APFKQAEFQILYGEGI 196


>gi|33087839|gb|AAP93050.1| recombination protein A [Yersinia kristensenii]
          Length = 170

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 114/172 (66%), Positives = 140/172 (81%), Gaps = 2/172 (1%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAS 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I+
Sbjct: 59  AQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVII 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           +DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ
Sbjct: 119 VDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQ 170


>gi|163960894|gb|ABY49991.1| recombination protein A [Mesorhizobium loti]
 gi|163960896|gb|ABY49992.1| recombination protein A [Mesorhizobium loti]
          Length = 160

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 128/158 (81%), Positives = 147/158 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDA
Sbjct: 3   EIETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEI
Sbjct: 63  EHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           EG+MG+SLPG+QARLMSQALRKLT+SISRS  +++FIN
Sbjct: 123 EGEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFIN 160


>gi|195542190|gb|ACF98305.1| RecA [Rhizobium yanglingense]
          Length = 165

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 133/163 (81%), Positives = 152/163 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDA
Sbjct: 2   EIETISTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEI
Sbjct: 62  EHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEI 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           EG+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMK
Sbjct: 122 EGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMK 164


>gi|199595024|gb|ACH90976.1| RecA [Stenotrophomonas maltophilia]
 gi|301318426|gb|ADK67128.1| RecA protein [Stenotrophomonas maltophilia]
          Length = 182

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 136/182 (74%), Positives = 157/182 (86%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +E + +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKLGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+V+DSVAALTP+AE
Sbjct: 61  AEHALDPIYAGKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVVDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS  ++VFINQ+RMKIGVM    SPE TTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPEVTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|199595008|gb|ACH90968.1| RecA [Stenotrophomonas maltophilia]
 gi|199595050|gb|ACH90989.1| RecA [Stenotrophomonas maltophilia]
 gi|199595064|gb|ACH90996.1| RecA [Stenotrophomonas maltophilia]
          Length = 182

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 137/182 (75%), Positives = 158/182 (86%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +E + +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKLGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+VIDSVAALTP+AE
Sbjct: 61  AEHALDPIYAGKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVIDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS  +++FINQ+RMKIGVM    SPETTTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPETTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|118405793|gb|ABK81262.1| recombinase A [Azotobacter chroococcum]
 gi|118405795|gb|ABK81263.1| recombinase A [Azotobacter chroococcum]
          Length = 197

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 138/194 (71%), Positives = 170/194 (87%)

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++
Sbjct: 4   QKQGATCAFVDAEHALDPDYAAKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIV 63

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMF
Sbjct: 64  DSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMF 123

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+
Sbjct: 124 GNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQIL 183

Query: 272 YGEGISFFGELIDL 285
           YG+GI   GE+IDL
Sbjct: 184 YGKGIYRNGEIIDL 197


>gi|18076845|emb|CAC87589.1| recA protein [Pseudomonas flavescens]
          Length = 199

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 139/199 (69%), Positives = 173/199 (86%)

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA++Q+ G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+
Sbjct: 1   VIAEAQRMGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAI 60

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMK
Sbjct: 61  DVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q 
Sbjct: 121 IGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQA 180

Query: 267 EFDIMYGEGISFFGELIDL 285
           EF I+YG+GI   GE+IDL
Sbjct: 181 EFQILYGKGIYRNGEIIDL 199


>gi|112791536|gb|ABI22038.1| recombinase A [Pectobacterium cypripedii]
          Length = 196

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 137/194 (70%), Positives = 169/194 (87%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FI
Sbjct: 61  ARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSETRVKVVKNKIA 180

Query: 261 SPFKQVEFDIMYGE 274
           +PFKQ EF IMYGE
Sbjct: 181 APFKQAEFQIMYGE 194


>gi|112791556|gb|ABI22048.1| recombinase A [Erwinia americana]
 gi|112791558|gb|ABI22049.1| recombinase A [Rahnella aquatilis]
          Length = 196

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 139/196 (70%), Positives = 170/196 (86%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FI
Sbjct: 61  TRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDVVVGSETRVKVVKNKIA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF IMYGEGI
Sbjct: 181 APFKQAEFQIMYGEGI 196


>gi|313870907|gb|ADR82343.1| DNA recombination protein RecA [Yersinia pseudotuberculosis]
 gi|313870909|gb|ADR82344.1| DNA recombination protein RecA [Yersinia pseudotuberculosis]
 gi|313870911|gb|ADR82345.1| DNA recombination protein RecA [Yersinia pseudotuberculosis]
 gi|313870915|gb|ADR82347.1| DNA recombination protein RecA [Yersinia pseudotuberculosis]
 gi|313870917|gb|ADR82348.1| DNA recombination protein RecA [Yersinia pseudotuberculosis]
 gi|313870919|gb|ADR82349.1| DNA recombination protein RecA [Yersinia pseudotuberculosis]
 gi|313870921|gb|ADR82350.1| DNA recombination protein RecA [Yersinia pseudotuberculosis]
 gi|313870925|gb|ADR82352.1| DNA recombination protein RecA [Yersinia sp. Y25]
 gi|313870927|gb|ADR82353.1| DNA recombination protein RecA [Yersinia pseudotuberculosis]
 gi|313870929|gb|ADR82354.1| DNA recombination protein RecA [Yersinia pseudotuberculosis]
 gi|313870931|gb|ADR82355.1| DNA recombination protein RecA [Yersinia pseudotuberculosis]
 gi|313870933|gb|ADR82356.1| DNA recombination protein RecA [Yersinia pseudotuberculosis]
          Length = 194

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 137/194 (70%), Positives = 170/194 (87%)

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           CAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAAL
Sbjct: 1   CAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAAL 60

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
           TP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ+RMKIGVMFG+PETT
Sbjct: 61  TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQIRMKIGVMFGNPETT 120

Query: 218 TGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277
           TGGNALKFY+SVRLDIRR+G++KD D + G++TRVKVVKNK+A+PFKQ EF I+YGEGI+
Sbjct: 121 TGGNALKFYASVRLDIRRIGAVKDGDVVVGSETRVKVVKNKIAAPFKQAEFQILYGEGIN 180

Query: 278 FFGELIDLGVKASI 291
             GEL+DLGVK  +
Sbjct: 181 INGELVDLGVKHKL 194


>gi|50982221|gb|AAT91776.1| recombination protein A [Bradyrhizobium japonicum bv. glycinearum]
 gi|50982223|gb|AAT91777.1| recombination protein A [Bradyrhizobium japonicum bv. glycinearum]
 gi|190612080|gb|ACE80474.1| recombination protein A [Bradyrhizobium japonicum]
 gi|190612082|gb|ACE80475.1| recombination protein A [Bradyrhizobium japonicum]
 gi|190612084|gb|ACE80476.1| recombination protein A [Bradyrhizobium japonicum]
 gi|190612086|gb|ACE80477.1| recombination protein A [Bradyrhizobium japonicum]
 gi|190612088|gb|ACE80478.1| recombination protein A [Bradyrhizobium japonicum]
 gi|190612090|gb|ACE80479.1| recombination protein A [Bradyrhizobium japonicum]
 gi|190612092|gb|ACE80480.1| recombination protein A [Bradyrhizobium japonicum]
 gi|190612094|gb|ACE80481.1| recombination protein A [Bradyrhizobium japonicum]
 gi|190612096|gb|ACE80482.1| recombination protein A [Bradyrhizobium japonicum]
 gi|190612098|gb|ACE80483.1| recombination protein A [Bradyrhizobium japonicum]
 gi|190612100|gb|ACE80484.1| recombination protein A [Bradyrhizobium japonicum]
 gi|190612102|gb|ACE80485.1| recombination protein A [Bradyrhizobium japonicum]
 gi|190612104|gb|ACE80486.1| recombination protein A [Bradyrhizobium japonicum]
 gi|190612106|gb|ACE80487.1| recombination protein A [Bradyrhizobium japonicum]
 gi|190612108|gb|ACE80488.1| recombination protein A [Bradyrhizobium japonicum]
 gi|190612110|gb|ACE80489.1| recombination protein A [Bradyrhizobium japonicum]
 gi|190612112|gb|ACE80490.1| recombination protein A [Bradyrhizobium japonicum]
 gi|190612114|gb|ACE80491.1| recombination protein A [Bradyrhizobium japonicum]
 gi|190612116|gb|ACE80492.1| recombination protein A [Bradyrhizobium japonicum]
          Length = 170

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 125/171 (73%), Positives = 151/171 (88%), Gaps = 1/171 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++Q
Sbjct: 1   MKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+D
Sbjct: 60  KKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           SVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 120 SVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSHTMVIFINQI 170


>gi|18076863|emb|CAC87598.1| recA protein [Pseudomonas putida]
          Length = 199

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 139/199 (69%), Positives = 173/199 (86%)

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AV
Sbjct: 1   VIAEAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAV 60

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMK
Sbjct: 61  DVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVK+VKNK++ PF+Q 
Sbjct: 121 IGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKIVKNKVSPPFRQA 180

Query: 267 EFDIMYGEGISFFGELIDL 285
           EF I+YG+GI   GE+IDL
Sbjct: 181 EFQILYGKGIYRNGEIIDL 199


>gi|322510291|gb|ADX05531.1| recombination protein A [Sinorhizobium sp. CCBAU 05696]
          Length = 165

 Score =  179 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 134/163 (82%), Positives = 153/163 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A++QK GG CAFVDA
Sbjct: 3   EIETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAEAQKKGGICAFVDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEI
Sbjct: 63  EHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           EG+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 123 EGEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 165


>gi|307343384|emb|CBJ18133.1| recombinase A [Micromonospora sp. GUI23]
          Length = 180

 Score =  179 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 130/180 (72%), Positives = 154/180 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH++A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHSVASAQRLGGIAAFIDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDAMLVSQPDTGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
            G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALK Y+SVRL
Sbjct: 121 VGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYASVRL 180


>gi|199594972|gb|ACH90950.1| RecA [Stenotrophomonas maltophilia]
 gi|199595004|gb|ACH90966.1| RecA [Stenotrophomonas maltophilia]
 gi|199595006|gb|ACH90967.1| RecA [Stenotrophomonas maltophilia]
 gi|199595022|gb|ACH90975.1| RecA [Stenotrophomonas maltophilia]
 gi|199595034|gb|ACH90981.1| RecA [Stenotrophomonas maltophilia]
 gi|199595054|gb|ACH90991.1| RecA [Stenotrophomonas maltophilia]
 gi|199595062|gb|ACH90995.1| RecA [Stenotrophomonas maltophilia]
 gi|199595072|gb|ACH91000.1| RecA [Stenotrophomonas maltophilia]
          Length = 182

 Score =  179 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 138/182 (75%), Positives = 158/182 (86%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +E + +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKMGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+VIDSVAALTP+AE
Sbjct: 61  AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVIDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS  ++VFINQ+RMKIGVM    SPETTTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPETTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|29652086|gb|AAO87705.1| RecA [Listeria monocytogenes]
          Length = 171

 Score =  179 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 116/172 (67%), Positives = 143/172 (83%), Gaps = 2/172 (1%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA+ 
Sbjct: 2   IMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEV 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           Q  GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRSGAVD++VI
Sbjct: 60  QAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLVI 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+
Sbjct: 120 DSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQI 171


>gi|213012494|gb|ACJ38813.1| recombination-repair protein [Vibrio tubiashii]
          Length = 192

 Score =  179 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 137/191 (71%), Positives = 168/191 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVE 267
           NK+A+PFKQ E
Sbjct: 181 NKIAAPFKQAE 191


>gi|50982227|gb|AAT91779.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|50982229|gb|AAT91780.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|50982231|gb|AAT91781.1| recombination protein A [Bradyrhizobium genosp. alpha]
 gi|50982243|gb|AAT91787.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190611980|gb|ACE80424.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190611982|gb|ACE80425.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190611984|gb|ACE80426.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190611986|gb|ACE80427.1| recombination protein A [Bradyrhizobium sp. BuCeR1]
 gi|190611988|gb|ACE80428.1| recombination protein A [Bradyrhizobium sp. BuCeR2]
 gi|190611990|gb|ACE80429.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190611992|gb|ACE80430.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190611994|gb|ACE80431.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612004|gb|ACE80436.1| recombination protein A [Bradyrhizobium liaoningense]
 gi|190612010|gb|ACE80439.1| recombination protein A [Bradyrhizobium liaoningense]
 gi|190612012|gb|ACE80440.1| recombination protein A [Bradyrhizobium liaoningense]
 gi|190612014|gb|ACE80441.1| recombination protein A [Bradyrhizobium liaoningense]
 gi|190612022|gb|ACE80445.1| recombination protein A [Bradyrhizobium elkanii]
 gi|190612028|gb|ACE80448.1| recombination protein A [Bradyrhizobium sp. BuNoG5]
 gi|190612038|gb|ACE80453.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612040|gb|ACE80454.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612042|gb|ACE80455.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612044|gb|ACE80456.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612046|gb|ACE80457.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612048|gb|ACE80458.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612050|gb|ACE80459.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612052|gb|ACE80460.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612054|gb|ACE80461.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612056|gb|ACE80462.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612058|gb|ACE80463.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612060|gb|ACE80464.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612062|gb|ACE80465.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612064|gb|ACE80466.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612066|gb|ACE80467.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612068|gb|ACE80468.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612070|gb|ACE80469.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612072|gb|ACE80470.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612074|gb|ACE80471.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612076|gb|ACE80472.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612078|gb|ACE80473.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612120|gb|ACE80494.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|190612122|gb|ACE80495.1| recombination protein A [Bradyrhizobium yuanmingense]
          Length = 170

 Score =  179 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 127/171 (74%), Positives = 151/171 (88%), Gaps = 1/171 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG        IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++Q
Sbjct: 1   MKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+D
Sbjct: 60  KKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           SVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 120 SVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 170


>gi|213012552|gb|ACJ38842.1| recombination-repair protein [Vibrio tubiashii]
          Length = 192

 Score =  179 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 137/191 (71%), Positives = 168/191 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVE 267
           NK+A+PFKQ E
Sbjct: 181 NKIAAPFKQAE 191


>gi|158631772|gb|ABW74991.1| RecA [Mesorhizobium gobiense]
          Length = 160

 Score =  179 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 130/159 (81%), Positives = 150/159 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHAL
Sbjct: 1   VPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+M
Sbjct: 61  DPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G+SLPG+QARLMSQALRKLT+SISRS  +++FINQ+RMK
Sbjct: 121 GDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMK 159


>gi|213012576|gb|ACJ38854.1| recombination-repair protein [Vibrio sp. R-729]
          Length = 197

 Score =  179 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 136/197 (69%), Positives = 170/197 (86%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMYG 273
           NK+A+PFK+     MYG
Sbjct: 181 NKIAAPFKEATRKFMYG 197


>gi|199595052|gb|ACH90990.1| RecA [Stenotrophomonas maltophilia]
 gi|199595060|gb|ACH90994.1| RecA [Stenotrophomonas maltophilia]
 gi|301318406|gb|ADK67118.1| RecA protein [Stenotrophomonas maltophilia]
          Length = 182

 Score =  179 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 137/182 (75%), Positives = 158/182 (86%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +E + +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKMGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+VIDSVAALTP+AE
Sbjct: 61  AEHALDPIYAGKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVIDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS  +++FINQ+RMKIGVM    SPETTTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPETTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|193090233|gb|ACF15288.1| recombination protein A [Rhizobium etli]
 gi|193090235|gb|ACF15289.1| recombination protein A [Rhizobium etli]
          Length = 166

 Score =  179 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 136/167 (81%), Positives = 155/167 (92%), Gaps = 1/167 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LGS  ++ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA+
Sbjct: 1   SVMKLGSNENVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V
Sbjct: 60  SQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           +DSVAALTPRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C++
Sbjct: 120 VDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNCMV 166


>gi|207080819|gb|ACI22753.1| RecA [Rhizobium sp. J3-N52]
          Length = 159

 Score =  179 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 130/160 (81%), Positives = 148/160 (92%), Gaps = 1/160 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG+  S+ E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL 
Sbjct: 1   FGKGSVMKLGANESVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAV
Sbjct: 60  TIAEAQKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKL
Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKL 159


>gi|158631814|gb|ABW75012.1| RecA [Rhizobium sp. CCBAU 83515]
          Length = 164

 Score =  179 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 134/164 (81%), Positives = 155/164 (94%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHA
Sbjct: 1   TISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+
Sbjct: 61  LDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIGVM
Sbjct: 121 MGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 164


>gi|307343380|emb|CBJ18131.1| recombinase A [Micromonospora sp. GUI16]
          Length = 180

 Score =  179 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 130/180 (72%), Positives = 153/180 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ LH +A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGIGGLPRGRVVEIYGPESSGKTTVXLHAVANAQRNGGIAAFIDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
            G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRL
Sbjct: 121 VGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRL 180


>gi|193090237|gb|ACF15290.1| recombination protein A [Rhizobium huautlense]
          Length = 166

 Score =  179 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 136/167 (81%), Positives = 154/167 (92%), Gaps = 1/167 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LGS  +I E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA+
Sbjct: 1   SVMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V
Sbjct: 60  AQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           +DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS C++
Sbjct: 120 VDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCMV 166


>gi|306517565|emb|CBO93077.1| DNA recombinase A [Pantoea agglomerans]
          Length = 183

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 133/180 (73%), Positives = 158/180 (87%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+K
Sbjct: 1   LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIASAQRKGKTCAFIDAEHALDPVYAKK 60

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           LGVD++NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+
Sbjct: 61  LGVDIENLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGL 120

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
            AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIR
Sbjct: 121 AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR 180


>gi|299480239|gb|ADJ18745.1| recombination protein RecA [Rhizobium sp. CCBAU 65648]
          Length = 166

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 137/165 (83%), Positives = 156/165 (94%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDA
Sbjct: 2   EIETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGV+L+NLLISQPDTGEQALEITD LVRSGAVD++V++SVAALTPRAEI
Sbjct: 62  EHALDPVYARKLGVNLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVNSVAALTPRAEI 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           EG+MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIG
Sbjct: 122 EGEMGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 166


>gi|262013572|gb|ACY06858.1| recombination protein A [Yersinia similis]
 gi|262013574|gb|ACY06859.1| recombination protein A [Yersinia intermedia]
 gi|262013576|gb|ACY06860.1| recombination protein A [Yersinia aldovae]
 gi|262292895|gb|ACY42650.1| recombination protein A [Yersinia sp. A125KOH2]
 gi|262292897|gb|ACY42651.1| recombination protein A [Yersinia sp. AYV25K1]
 gi|262292899|gb|ACY42652.1| recombination protein A [Yersinia sp. AYV7.1KOH2]
          Length = 170

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 114/172 (66%), Positives = 140/172 (81%), Gaps = 2/172 (1%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  ASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FI
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFI 170


>gi|283945405|dbj|BAI66456.1| recombinase A [Vibrio tapetis]
          Length = 193

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 133/193 (68%), Positives = 163/193 (84%)

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            +      G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 1   LLQPRNVVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 60

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 61  DVMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 120

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIKD D I GN+TR+KVVKNK+A+PFKQ 
Sbjct: 121 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEIVGNETRIKVVKNKIAAPFKQA 180

Query: 267 EFDIMYGEGISFF 279
           E  I+YG+G +  
Sbjct: 181 ETQILYGQGFNRN 193


>gi|306517551|emb|CBO93065.1| DNA recombinase A [Pantoea stewartii subsp. stewartii]
          Length = 184

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 132/180 (73%), Positives = 157/180 (87%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LDIALG GG P GRIVEIYGPE+SGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+K
Sbjct: 2   LDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKK 61

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           LGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+
Sbjct: 62  LGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGL 121

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
            AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIR
Sbjct: 122 AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR 181


>gi|213950722|gb|ACJ54606.1| recombination protein A [Bradyrhizobium liaoningense]
          Length = 176

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 127/172 (73%), Positives = 149/172 (86%), Gaps = 1/172 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG        IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+
Sbjct: 4   KGSIMKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTV 62

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD+
Sbjct: 63  AEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDV 122

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  + +  
Sbjct: 123 LVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMGILT 174


>gi|158631812|gb|ABW75011.1| RecA [Rhizobium sp. CCBAU 83482]
          Length = 162

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 132/162 (81%), Positives = 153/162 (94%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHA
Sbjct: 1   TISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+
Sbjct: 61  LDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIG
Sbjct: 121 MGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIG 162


>gi|262013568|gb|ACY06856.1| recombination protein A [Yersinia rohdei]
 gi|262013570|gb|ACY06857.1| recombination protein A [Yersinia pseudotuberculosis]
 gi|262013578|gb|ACY06861.1| recombination protein A [Yersinia enterocolitica subsp.
           enterocolitica]
 gi|262013580|gb|ACY06862.1| recombination protein A [Yersinia enterocolitica subsp.
           palearctica]
 gi|262013582|gb|ACY06863.1| recombination protein A [Yersinia massiliensis]
 gi|262013584|gb|ACY06864.1| recombination protein A [Yersinia aleksiciae]
          Length = 170

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 114/172 (66%), Positives = 140/172 (81%), Gaps = 2/172 (1%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FI
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFI 170


>gi|118405791|gb|ABK81261.1| recombinase A [Azotobacter beijerinckii]
          Length = 197

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 138/194 (71%), Positives = 170/194 (87%)

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK G TCAFVDAE+ALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++
Sbjct: 4   QKQGATCAFVDAENALDPDYAAKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIV 63

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMF
Sbjct: 64  DSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMF 123

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETTTGGNALKFY+SVRLDIRR G++KD D + G++TRVKVVKNK+A PF+Q EF I+
Sbjct: 124 GNPETTTGGNALKFYASVRLDIRRTGAVKDSDEVVGSETRVKVVKNKVAPPFRQAEFQIL 183

Query: 272 YGEGISFFGELIDL 285
           YG+GI   GE+IDL
Sbjct: 184 YGKGIYRNGEIIDL 197


>gi|29652184|gb|AAO87753.1| RecA [Listeria monocytogenes]
          Length = 175

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 122/175 (69%), Positives = 149/175 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA+ Q  GGT AF+DA
Sbjct: 1   NISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEVQAQGGTAAFIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRSGAVD++VIDSVAAL PRAEI
Sbjct: 61  EHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLVIDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           EG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+R K+GVMFG+PE T 
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVGVMFGNPEITP 175


>gi|307343416|emb|CBJ18149.1| recombinase A [Micromonospora sp. CR39]
          Length = 179

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 130/179 (72%), Positives = 154/179 (86%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH++A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHSVASAQRLGGIAAFIDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDAMLVSQPDTGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
            G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR
Sbjct: 121 VGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVR 179


>gi|18076861|emb|CAC87597.1| recA protein [Pseudomonas mendocina]
          Length = 199

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 139/199 (69%), Positives = 173/199 (86%)

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA++QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+
Sbjct: 1   VIAEAQKLGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAI 60

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMK
Sbjct: 61  DVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFGSPETTTGGNALKFYSSVRLDIRR G++K+ + + G++TRVK+VKNK+A PF+Q 
Sbjct: 121 IGVMFGSPETTTGGNALKFYSSVRLDIRRTGAVKEGEEVVGSETRVKIVKNKVAPPFRQA 180

Query: 267 EFDIMYGEGISFFGELIDL 285
           EF I+YG+GI   GE+IDL
Sbjct: 181 EFQILYGKGIYRNGEIIDL 199


>gi|50982205|gb|AAT91768.1| recombination protein A [Bradyrhizobium genosp. beta]
 gi|50982219|gb|AAT91775.1| recombination protein A [Bradyrhizobium sp. CICS70]
 gi|190612118|gb|ACE80493.1| recombination protein A [Bradyrhizobium liaoningense]
 gi|190612124|gb|ACE80496.1| recombination protein A [Bradyrhizobium liaoningense]
 gi|190612126|gb|ACE80497.1| recombination protein A [Bradyrhizobium liaoningense]
 gi|190612128|gb|ACE80498.1| recombination protein A [Bradyrhizobium liaoningense]
 gi|190612130|gb|ACE80499.1| recombination protein A [Bradyrhizobium liaoningense]
 gi|190612132|gb|ACE80500.1| recombination protein A [Bradyrhizobium liaoningense]
 gi|190612134|gb|ACE80501.1| recombination protein A [Bradyrhizobium liaoningense]
 gi|190612136|gb|ACE80502.1| recombination protein A [Bradyrhizobium liaoningense]
 gi|190612138|gb|ACE80503.1| recombination protein A [Bradyrhizobium liaoningense]
          Length = 170

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 128/171 (74%), Positives = 151/171 (88%), Gaps = 1/171 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG        IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++Q
Sbjct: 1   MKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VID
Sbjct: 60  KKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           SVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 120 SVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 170


>gi|158631782|gb|ABW74996.1| RecA [Mesorhizobium septentrionale]
          Length = 161

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 131/161 (81%), Positives = 152/161 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHAL
Sbjct: 1   VPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+M
Sbjct: 61  DPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+SLPG+QARLMSQALRKLT+SISRS  +++FINQ+RMK+G
Sbjct: 121 GDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKMG 161


>gi|50982177|gb|AAT91754.1| recombination protein A [Bradyrhizobium genosp. alpha bv.
           genistearum]
          Length = 170

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 127/171 (74%), Positives = 151/171 (88%), Gaps = 1/171 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG        +E VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++Q
Sbjct: 1   MKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VID
Sbjct: 60  KKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           SVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 120 SVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 170


>gi|50982185|gb|AAT91758.1| recombination protein A [Bradyrhizobium japonicum bv. genistearum]
 gi|50982207|gb|AAT91769.1| recombination protein A [Bradyrhizobium japonicum bv. glycinearum]
 gi|50982209|gb|AAT91770.1| recombination protein A [Bradyrhizobium japonicum bv. glycinearum]
 gi|50982211|gb|AAT91771.1| recombination protein A [Bradyrhizobium japonicum bv. glycinearum]
 gi|50982213|gb|AAT91772.1| recombination protein A [Bradyrhizobium japonicum bv. genistearum]
 gi|50982215|gb|AAT91773.1| recombination protein A [Bradyrhizobium japonicum bv. genistearum]
 gi|50982217|gb|AAT91774.1| recombination protein A [Bradyrhizobium japonicum bv. genistearum]
          Length = 170

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 125/171 (73%), Positives = 151/171 (88%), Gaps = 1/171 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++Q
Sbjct: 1   MKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+D
Sbjct: 60  KKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           SVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 120 SVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 170


>gi|190611996|gb|ACE80432.1| recombination protein A [Bradyrhizobium elkanii]
 gi|190611998|gb|ACE80433.1| recombination protein A [Bradyrhizobium elkanii]
 gi|190612000|gb|ACE80434.1| recombination protein A [Bradyrhizobium elkanii]
 gi|190612002|gb|ACE80435.1| recombination protein A [Bradyrhizobium elkanii]
 gi|190612006|gb|ACE80437.1| recombination protein A [Bradyrhizobium elkanii]
 gi|190612008|gb|ACE80438.1| recombination protein A [Bradyrhizobium sp. BuMiT10]
 gi|190612018|gb|ACE80443.1| recombination protein A [Bradyrhizobium elkanii]
          Length = 170

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 126/171 (73%), Positives = 150/171 (87%), Gaps = 1/171 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG        +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+ Q
Sbjct: 1   MKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAEGQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VID
Sbjct: 60  KKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVRSGAVDVLVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           SVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 120 SVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 170


>gi|169883812|gb|ACA98002.1| recombination protein A [Rhizobium leguminosarum]
          Length = 167

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 134/164 (81%), Positives = 155/164 (94%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHA
Sbjct: 4   AISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHA 63

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+
Sbjct: 64  LDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGE 123

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIGVM
Sbjct: 124 MGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 167


>gi|193090229|gb|ACF15286.1| recombination protein A [Rhizobium leguminosarum]
          Length = 166

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 129/167 (77%), Positives = 153/167 (91%), Gaps = 1/167 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA+
Sbjct: 1   SVMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V
Sbjct: 60  AQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           +DSVAALTPRAEIEG+MG+SLPG+QARLM QALRKLT+SIS+S  ++
Sbjct: 120 VDSVAALTPRAEIEGEMGDSLPGLQARLMGQALRKLTASISKSNTMV 166


>gi|223885871|gb|ACN22607.1| recombination protein A [Rhizobium oryzae]
          Length = 162

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 135/161 (83%), Positives = 152/161 (94%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE V +GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA+SQK GG CAFVDAE
Sbjct: 2   IETVPTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAESQKKGGVCAFVDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIE
Sbjct: 62  HALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           G+MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RM
Sbjct: 122 GEMGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRM 162


>gi|307343342|emb|CBJ18112.1| recombinase A [Micromonospora lupini]
          Length = 179

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 129/179 (72%), Positives = 153/179 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
            G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPET+TGG ALKFY+SVR
Sbjct: 121 VGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETSTGGRALKFYASVR 179


>gi|112791514|gb|ABI22027.1| recombinase A [Pectobacterium carotovorum subsp. odoriferum]
          Length = 194

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 135/194 (69%), Positives = 168/194 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L R
Sbjct: 1   LTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ ++  +L+FINQ
Sbjct: 61  SGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQ 120

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+P
Sbjct: 121 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAP 180

Query: 263 FKQVEFDIMYGEGI 276
           FKQ EF I+YGEGI
Sbjct: 181 FKQAEFQILYGEGI 194


>gi|169792005|gb|ACA80306.1| recombination protein A [Sinorhizobium meliloti]
          Length = 169

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 136/168 (80%), Positives = 155/168 (92%), Gaps = 1/168 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TI
Sbjct: 3   KGSVMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 61

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI
Sbjct: 62  AEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDI 121

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           +VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C+
Sbjct: 122 LVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNCM 169


>gi|50982183|gb|AAT91757.1| recombination protein A [Bradyrhizobium genosp. beta]
 gi|50982199|gb|AAT91765.1| recombination protein A [Bradyrhizobium genosp. beta]
 gi|50982225|gb|AAT91778.1| recombination protein A [Bradyrhizobium liaoningense bv.
           glycinearum]
 gi|50982245|gb|AAT91788.1| recombination protein A [Bradyrhizobium liaoningense]
 gi|52550817|gb|AAU84454.1| recombination protein A [Bradyrhizobium genosp. beta]
          Length = 170

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 128/171 (74%), Positives = 151/171 (88%), Gaps = 1/171 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG        IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++Q
Sbjct: 1   MKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VID
Sbjct: 60  KKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           SVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 120 SVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 170


>gi|89143241|emb|CAJ57515.1| recombinase A [Microbacterium esteraromaticum]
          Length = 188

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 132/187 (70%), Positives = 156/187 (83%)

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           Q+ GG  AF+DAEHALD  YARKLGVD+  LL+SQPDTGEQALEI DML+RSGA+D++VI
Sbjct: 2   QRAGGIAAFIDAEHALDPEYARKLGVDIDQLLVSQPDTGEQALEIADMLIRSGAIDLVVI 61

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL P AEI+G+MG+S  G+QARLMSQALRKLT  ++++K   +FINQ+R KIGV F
Sbjct: 62  DSVAALVPEAEIKGEMGDSHVGLQARLMSQALRKLTGGLNQTKTTAIFINQLREKIGVFF 121

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           GSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNKMA PFKQ EFDI+
Sbjct: 122 GSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKMAPPFKQAEFDIL 181

Query: 272 YGEGISF 278
           YG GIS 
Sbjct: 182 YGIGISR 188


>gi|145577853|gb|ABP87377.1| RecA [Vibrio sp. MSSRF10]
          Length = 170

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 114/172 (66%), Positives = 144/172 (83%), Gaps = 2/172 (1%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q
Sbjct: 1   MRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAAAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           + G TCAF+DAEHALD +YA+KLGVD++ LL+SQPDTGEQALEI D L RSGA+D++VID
Sbjct: 59  REGKTCAFIDAEHALDPVYAKKLGVDIEALLVSQPDTGEQALEICDALARSGAIDVMVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           SVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+R
Sbjct: 119 SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIR 170


>gi|18072940|emb|CAC87605.1| recA protein [Azorhizophilus paspali]
 gi|118405785|gb|ABK81258.1| recombinase A [Azorhizophilus paspali]
 gi|118405797|gb|ABK81264.1| recombinase A [Azotobacter vinelandii]
          Length = 197

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 138/194 (71%), Positives = 169/194 (87%)

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++
Sbjct: 4   QKQGATCAFVDAEHALDPDYAAKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIV 63

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMF
Sbjct: 64  DSVAALVPKAEIEGEMGDQHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMF 123

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+
Sbjct: 124 GNPETTTGGNALKFYASVRLDIRRTGAVKESDEVIGSETRVKVVKNKVAPPFRQAEFQIL 183

Query: 272 YGEGISFFGELIDL 285
           YG+GI   GE+IDL
Sbjct: 184 YGKGIYRNGEIIDL 197


>gi|307343404|emb|CBJ18143.1| recombinase A [Micromonospora sp. GUI63]
          Length = 179

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 129/179 (72%), Positives = 152/179 (84%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
            G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALK Y+SVR
Sbjct: 121 VGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYASVR 179


>gi|158905829|gb|ABW82564.1| RecA [Bradyrhizobiaceae bacterium NS23]
 gi|158905839|gb|ABW82569.1| RecA [Bradyrhizobiaceae bacterium NS28]
          Length = 162

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 125/162 (77%), Positives = 149/162 (91%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           EVVSSGSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALH +A++QK GG CAFVDAEH
Sbjct: 1   EVVSSGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHCVAEAQKKGGICAFVDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGV++  LLISQPD GEQALEI D LVRSGAVD+++IDSVAAL PRAE+EG
Sbjct: 61  ALDPVYARKLGVNVDELLISQPDHGEQALEIADTLVRSGAVDVLIIDSVAALVPRAELEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 162


>gi|158631790|gb|ABW75000.1| RecA [Rhizobium sp. CCBAU 83389]
          Length = 168

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 131/167 (78%), Positives = 153/167 (91%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSLGLDIALG+GG P+GRI++    ESSGKTTLAL TIA++QK GG CAFVDA
Sbjct: 2   EIETISTGSLGLDIALGVGGLPRGRIIDPCPKESSGKTTLALQTIAEAQKKGGICAFVDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEI
Sbjct: 62  EHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEI 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           EG+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIGVM
Sbjct: 122 EGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 168


>gi|289812913|gb|ADD20917.1| recombinase A [Bradyrhizobium sp. CCBAU 23086]
          Length = 164

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 123/164 (75%), Positives = 150/164 (91%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E VS+GSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DA
Sbjct: 1   DVETVSTGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGA+D++V+DSVAAL P+AE+
Sbjct: 61  EHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALVPKAEL 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 EGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 164


>gi|169791999|gb|ACA80303.1| recombination protein A [Sinorhizobium meliloti]
          Length = 168

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 136/167 (81%), Positives = 154/167 (92%), Gaps = 1/167 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TI
Sbjct: 3   KGSVMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 61

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI
Sbjct: 62  AEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDI 121

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           +VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C
Sbjct: 122 LVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNC 168


>gi|169792003|gb|ACA80305.1| recombination protein A [Sinorhizobium meliloti]
          Length = 169

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 136/168 (80%), Positives = 155/168 (92%), Gaps = 1/168 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TI
Sbjct: 3   KGSVMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 61

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI
Sbjct: 62  AEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDI 121

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           +VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C+
Sbjct: 122 LVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNCM 169


>gi|112791560|gb|ABI22050.1| recombinase A [Yersinia enterocolitica]
          Length = 196

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 137/196 (69%), Positives = 170/196 (86%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FI
Sbjct: 61  TRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D + G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDVVVGSETRVKVVKNKIA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF I+YGEGI
Sbjct: 181 APFKQAEFQILYGEGI 196


>gi|158631810|gb|ABW75010.1| RecA [Rhizobium sp. CCBAU 83431]
          Length = 163

 Score =  178 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 134/163 (82%), Positives = 155/163 (95%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL
Sbjct: 1   ISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+M
Sbjct: 61  DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIGVM
Sbjct: 121 GDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 163


>gi|213012314|gb|ACJ38723.1| recombination-repair protein [Vibrio alginolyticus]
          Length = 197

 Score =  178 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 133/197 (67%), Positives = 168/197 (85%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ L  IA +Q+ G T   +DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTITLELIAAAQREGKTWCVIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMYG 273
           NK+A+PFK+    IMYG
Sbjct: 181 NKIAAPFKEANTQIMYG 197


>gi|313870913|gb|ADR82346.1| DNA recombination protein RecA [Yersinia pseudotuberculosis]
 gi|313870923|gb|ADR82351.1| DNA recombination protein RecA [Yersinia pseudotuberculosis]
          Length = 194

 Score =  178 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 136/194 (70%), Positives = 170/194 (87%)

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           CAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAAL
Sbjct: 1   CAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAAL 60

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
           TP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ+RMKIGVMFG+PETT
Sbjct: 61  TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQIRMKIGVMFGNPETT 120

Query: 218 TGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277
           TGGNALKFY+SVRLDIRR+G++K+ D + G++TRVKVVKNK+A+PFKQ EF I+YGEGI+
Sbjct: 121 TGGNALKFYASVRLDIRRIGAVKEGDVVVGSETRVKVVKNKIAAPFKQAEFQILYGEGIN 180

Query: 278 FFGELIDLGVKASI 291
             GEL+DLGVK  +
Sbjct: 181 INGELVDLGVKHKL 194


>gi|289190678|gb|ADC93444.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-29]
 gi|289190698|gb|ADC93454.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-29]
 gi|289190700|gb|ADC93455.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-29]
          Length = 169

 Score =  178 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 120/170 (70%), Positives = 148/170 (87%), Gaps = 1/170 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG        IE VS+GSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALH +A+ Q+
Sbjct: 1   KLGKNDRSM-DIETVSTGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHCVAEGQR 59

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGA+D++V+DS
Sbjct: 60  KGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAIDVLVVDS 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           VAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 120 VAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169


>gi|169792001|gb|ACA80304.1| recombination protein A [Sinorhizobium meliloti]
          Length = 168

 Score =  178 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 136/167 (81%), Positives = 154/167 (92%), Gaps = 1/167 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TI
Sbjct: 3   KGSVMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 61

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI
Sbjct: 62  AEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDI 121

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           +VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C
Sbjct: 122 LVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNC 168


>gi|307343350|emb|CBJ18116.1| recombinase A [Micromonospora pattaloongensis]
          Length = 177

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 125/177 (70%), Positives = 152/177 (85%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
            LD+ALG+GG P+GR++E+YGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  YA+
Sbjct: 1   ALDVALGVGGLPRGRVIEVYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEYAK 60

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
            LGVD  ++L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S  G
Sbjct: 61  ALGVDTDSMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSHVG 120

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
           +QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR
Sbjct: 121 LQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVR 177


>gi|18076843|emb|CAC87588.1| recA protein [Pseudomonas cichorii]
          Length = 199

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 142/199 (71%), Positives = 173/199 (86%)

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AV
Sbjct: 1   VIAQAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAV 60

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMK
Sbjct: 61  DVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVK+VKNK+A PF+Q 
Sbjct: 121 IGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKIVKNKVAPPFRQA 180

Query: 267 EFDIMYGEGISFFGELIDL 285
           EF I+YG+GI   GE+IDL
Sbjct: 181 EFQILYGKGIYLNGEIIDL 199


>gi|262013566|gb|ACY06855.1| recombination protein A [Yersinia ruckeri]
          Length = 170

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 115/172 (66%), Positives = 140/172 (81%), Gaps = 2/172 (1%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KGAIM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGAIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  ASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FI
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFI 170


>gi|262013562|gb|ACY06853.1| recombination protein A [Yersinia sp. ABF6a-c]
 gi|262013564|gb|ACY06854.1| recombination protein A [Yersinia sp. APN3a-c]
          Length = 170

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 115/172 (66%), Positives = 140/172 (81%), Gaps = 2/172 (1%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KGAIM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGAIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FI
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFI 170


>gi|194476419|gb|ACF74774.1| RecA [Rhizobium multihospitium]
          Length = 165

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 136/164 (82%), Positives = 155/164 (94%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHA
Sbjct: 2   TVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHA 61

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+
Sbjct: 62  LDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGE 121

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 122 MGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 165


>gi|193090241|gb|ACF15292.1| recombination protein A [Rhizobium sp. CCBAU 65810]
          Length = 166

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 135/167 (80%), Positives = 153/167 (91%), Gaps = 1/167 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LGS  SI E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA+
Sbjct: 1   SVMKLGSNDSIVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V
Sbjct: 60  AQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           +DSVAALTPRAEIEGDMG+SLPG+QARL SQALRKLT+SIS+SK ++
Sbjct: 120 VDSVAALTPRAEIEGDMGDSLPGLQARLFSQALRKLTASISKSKTMV 166


>gi|169883814|gb|ACA98003.1| recombination protein A [Rhizobium tropici]
          Length = 167

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 136/164 (82%), Positives = 155/164 (94%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHA
Sbjct: 4   TVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHA 63

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+
Sbjct: 64  LDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGE 123

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 124 MGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 167


>gi|50982179|gb|AAT91755.1| recombination protein A [Bradyrhizobium canariense bv. genistearum]
 gi|50982181|gb|AAT91756.1| recombination protein A [Bradyrhizobium canariense bv. genistearum]
 gi|50982187|gb|AAT91759.1| recombination protein A [Bradyrhizobium canariense bv. genistearum]
 gi|50982189|gb|AAT91760.1| recombination protein A [Bradyrhizobium canariense bv. genistearum]
 gi|50982191|gb|AAT91761.1| recombination protein A [Bradyrhizobium canariense bv. genistearum]
 gi|50982195|gb|AAT91763.1| recombination protein A [Bradyrhizobium canariense bv. genistearum]
 gi|50982197|gb|AAT91764.1| recombination protein A [Bradyrhizobium canariense bv. genistearum]
 gi|50982201|gb|AAT91766.1| recombination protein A [Bradyrhizobium canariense bv. genistearum]
 gi|50982203|gb|AAT91767.1| recombination protein A [Bradyrhizobium canariense bv. genistearum]
 gi|50982249|gb|AAT91790.1| recombination protein A [Bradyrhizobium canariense]
 gi|52550803|gb|AAU84447.1| recombination protein A [Bradyrhizobium canariense]
 gi|52550805|gb|AAU84448.1| recombination protein A [Bradyrhizobium canariense]
 gi|52550807|gb|AAU84449.1| recombination protein A [Bradyrhizobium canariense]
 gi|52550809|gb|AAU84450.1| recombination protein A [Bradyrhizobium canariense]
 gi|52550811|gb|AAU84451.1| recombination protein A [Bradyrhizobium canariense]
 gi|52550813|gb|AAU84452.1| recombination protein A [Bradyrhizobium canariense]
 gi|52550815|gb|AAU84453.1| recombination protein A [Bradyrhizobium canariense]
          Length = 170

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 126/171 (73%), Positives = 150/171 (87%), Gaps = 1/171 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A+ Q
Sbjct: 1   MKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEGQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VID
Sbjct: 60  KKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           SVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 120 SVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 170


>gi|195542198|gb|ACF98309.1| RecA [Sinorhizobium meliloti]
          Length = 169

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 138/165 (83%), Positives = 154/165 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDA
Sbjct: 5   EIETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDA 64

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VIDSVAAL PRAEI
Sbjct: 65  EHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVIDSVAALVPRAEI 124

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           EG+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIG
Sbjct: 125 EGEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 169


>gi|160375134|gb|ABX38947.1| recombinase protein A [Mesorhizobium ciceri]
          Length = 149

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 115/150 (76%), Positives = 136/150 (90%), Gaps = 1/150 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           +R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTL
Sbjct: 1   ERAFGKGSIMRLGANDQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRS
Sbjct: 60  ALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
           GA+D++V+DSVAALTPRAEIEG+MG+SLPG
Sbjct: 120 GAIDVLVVDSVAALTPRAEIEGEMGDSLPG 149


>gi|289812931|gb|ADD20926.1| recombinase A [Bradyrhizobium elkanii]
          Length = 164

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 125/164 (76%), Positives = 150/164 (91%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DA
Sbjct: 1   DVETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+
Sbjct: 61  EHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAEL 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 EGEMGDALPGLQARLMSQALRKLTASINKSHTMVIFINQIRMKI 164


>gi|193090215|gb|ACF15279.1| recombination protein A [Sinorhizobium sp. CCBAU 65732]
          Length = 167

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 139/167 (83%), Positives = 156/167 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDA
Sbjct: 1   EIETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEI
Sbjct: 61  EHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           EG+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 121 EGEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 167


>gi|29652310|gb|AAO87816.1| RecA [Listeria monocytogenes]
          Length = 179

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 122/181 (67%), Positives = 151/181 (83%), Gaps = 2/181 (1%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA+ Q 
Sbjct: 1   KLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEVQA 58

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRSGAVD++VIDS
Sbjct: 59  QGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLVIDS 118

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           VAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+R K+GVMFG+
Sbjct: 119 VAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVGVMFGN 178

Query: 214 P 214
           P
Sbjct: 179 P 179


>gi|118405787|gb|ABK81259.1| recombinase A [Azorhizophilus paspali]
          Length = 197

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 138/194 (71%), Positives = 169/194 (87%)

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++
Sbjct: 4   QKHGATCAFVDAEHALDPDYAAKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIV 63

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMF
Sbjct: 64  DSVAALVPKAEIEGEMGDQHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMF 123

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+
Sbjct: 124 GNPETTTGGNALKFYASVRLDIRRTGAVKESDEVIGSETRVKVVKNKVAPPFRQAEFQIL 183

Query: 272 YGEGISFFGELIDL 285
           YG+GI   GE+IDL
Sbjct: 184 YGKGIYRNGEIIDL 197


>gi|18076867|emb|CAC87600.1| recA protein [Pseudomonas putida]
          Length = 199

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 139/199 (69%), Positives = 174/199 (87%)

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA++QK+G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AV
Sbjct: 1   VIAEAQKSGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAV 60

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMK
Sbjct: 61  DVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVK+VKNK++ PF+Q 
Sbjct: 121 IGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKIVKNKVSPPFRQA 180

Query: 267 EFDIMYGEGISFFGELIDL 285
           EF I+YG+GI   GE+IDL
Sbjct: 181 EFQILYGKGIYRKGEIIDL 199


>gi|169883804|gb|ACA97998.1| recombination protein A [Rhizobium mongolense]
 gi|169883806|gb|ACA97999.1| recombination protein A [Rhizobium mongolense]
 gi|169883808|gb|ACA98000.1| recombination protein A [Rhizobium gallicum]
 gi|169883810|gb|ACA98001.1| recombination protein A [Rhizobium gallicum]
          Length = 167

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 135/164 (82%), Positives = 154/164 (93%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHA
Sbjct: 4   TISTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHA 63

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+
Sbjct: 64  LDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGE 123

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIGVM
Sbjct: 124 MGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 167


>gi|160375155|gb|ABX38949.1| recombinase protein A [Mesorhizobium caraganae]
          Length = 148

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 115/149 (77%), Positives = 135/149 (90%), Gaps = 1/149 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           +R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTL
Sbjct: 1   ERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRS
Sbjct: 60  ALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           GA+D++V+DSVAALTPRAEIEG+MG+SLP
Sbjct: 120 GAIDVLVVDSVAALTPRAEIEGEMGDSLP 148


>gi|193090243|gb|ACF15293.1| recombination protein A [Rhizobium sp. CCBAU 65813]
          Length = 166

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 135/167 (80%), Positives = 154/167 (92%), Gaps = 1/167 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LGS  +I E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA+
Sbjct: 1   SVMKLGSSENIVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V
Sbjct: 60  AQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           +DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S C++
Sbjct: 120 VDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNCMV 166


>gi|88705860|ref|ZP_01103569.1| RecA bacterial DNA recombination protein [Congregibacter litoralis
           KT71]
 gi|88699931|gb|EAQ97041.1| RecA bacterial DNA recombination protein [Congregibacter litoralis
           KT71]
          Length = 181

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 94/153 (61%), Positives = 124/153 (81%)

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           +RKLT++I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++K+ 
Sbjct: 1   MRKLTATIKQTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKEG 60

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           D + GN+TRVKVVKNK+A PFKQ EF IMYG GI    E+ID GVK +++DKSGAW+++K
Sbjct: 61  DEVVGNETRVKVVKNKVAPPFKQAEFQIMYGRGIYRTAEVIDWGVKLNLIDKSGAWYAYK 120

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
           G ++GQG+ N+  FL +N  +   IE L+R   
Sbjct: 121 GDKIGQGKANAAKFLEDNPALGSEIEGLIRSQL 153


>gi|158632166|gb|ABW75479.1| RecA [Rhizobium multihospitium]
          Length = 162

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 132/161 (81%), Positives = 152/161 (94%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHA
Sbjct: 1   TVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+
Sbjct: 61  LDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMK+
Sbjct: 121 MGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKV 161


>gi|307343396|emb|CBJ18139.1| recombinase A [Micromonospora sp. GUI41]
          Length = 176

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 126/176 (71%), Positives = 149/176 (84%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD
Sbjct: 1   PTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
             YA+ LGVD   +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG
Sbjct: 61  PEYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           +S  G+QARLMSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALK
Sbjct: 121 DSHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALK 176


>gi|163960859|gb|ABY49974.1| recombination protein A [Rhizobium leguminosarum]
 gi|163960861|gb|ABY49975.1| recombination protein A [Rhizobium leguminosarum]
          Length = 160

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 128/158 (81%), Positives = 148/158 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDA
Sbjct: 3   EIETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEI
Sbjct: 63  EHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           EG+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FIN
Sbjct: 123 EGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFIN 160


>gi|158632172|gb|ABW75482.1| RecA [Rhizobium multihospitium]
 gi|158632180|gb|ABW75486.1| RecA [Rhizobium multihospitium]
 gi|158632182|gb|ABW75487.1| RecA [Rhizobium multihospitium]
 gi|158632184|gb|ABW75488.1| RecA [Rhizobium multihospitium]
 gi|158632186|gb|ABW75489.1| RecA [Rhizobium multihospitium]
          Length = 162

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 134/162 (82%), Positives = 153/162 (94%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHA
Sbjct: 1   TVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+
Sbjct: 61  LDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIG
Sbjct: 121 MGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 162


>gi|158631826|gb|ABW75018.1| RecA [Sinorhizobium meliloti]
          Length = 170

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 138/165 (83%), Positives = 154/165 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDA
Sbjct: 3   EIETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VIDSVAAL PRAEI
Sbjct: 63  EHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVIDSVAALVPRAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           EG+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIG
Sbjct: 123 EGEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 167


>gi|317453432|emb|CBX31934.1| RecA protein [Rhizobium sp. 4148s]
          Length = 164

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 136/165 (82%), Positives = 152/165 (92%), Gaps = 1/165 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LGS  S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA+
Sbjct: 1   SIMKLGSNESVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAFVDAEHALD +YARKLGVDL NLLISQPDTGEQALEITD LVRSGAVD++V
Sbjct: 60  AQKKGGICAFVDAEHALDPVYARKLGVDLHNLLISQPDTGEQALEITDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           +DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+SK 
Sbjct: 120 VDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSKT 164


>gi|295984330|gb|ADG63633.1| RecA [Sinorhizobium sp. CCBAU 05640]
          Length = 165

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 135/163 (82%), Positives = 152/163 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDA
Sbjct: 3   EIETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEI
Sbjct: 63  EHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           EG+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 123 EGEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 165


>gi|158631764|gb|ABW74987.1| RecA [Bradyrhizobium elkanii]
          Length = 168

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 128/167 (76%), Positives = 153/167 (91%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DA
Sbjct: 2   DVETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+
Sbjct: 62  EHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAEL 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIGVM
Sbjct: 122 EGEMGDALPGLQARLMSQALRKLTASINKSHTMVIFINQIRMKIGVM 168


>gi|24251181|gb|AAN46108.1| RecA [Bacillus amyloliquefaciens]
          Length = 166

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 111/166 (66%), Positives = 139/166 (83%)

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVDI+VIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I++SK I +FIN
Sbjct: 1   RSGAVDIVVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKSKTIAIFIN 60

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K  + + GN+T++KVVKNK+A 
Sbjct: 61  QIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKTKIKVVKNKVAP 120

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           PF+  E DIMYGEGIS  GE+IDLG +  IV KSGAW+S++ +RLG
Sbjct: 121 PFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGAWYSYQEERLG 166


>gi|289812910|gb|ADD20916.1| recombinase A [Bradyrhizobium sp. CCBAU 23005]
          Length = 165

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 125/164 (76%), Positives = 150/164 (91%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DA
Sbjct: 2   DVETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+
Sbjct: 62  EHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAEL 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 122 EGEMGDALPGLQARLMSQALRKLTASINKSHTMVIFINQIRMKI 165


>gi|165909691|gb|ABY73750.1| recombination protein A [Mesorhizobium tarimense]
          Length = 159

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 129/159 (81%), Positives = 150/159 (94%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD
Sbjct: 1   PTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG
Sbjct: 61  PVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +SLPG+QARLMSQALRKLT+SISRS  +++FINQ+RMK+
Sbjct: 121 DSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKM 159


>gi|158631762|gb|ABW74986.1| RecA [Bradyrhizobium elkanii]
          Length = 168

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 126/165 (76%), Positives = 151/165 (91%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DA
Sbjct: 4   DVETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDA 63

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+
Sbjct: 64  EHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAEL 123

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIG
Sbjct: 124 EGEMGDALPGLQARLMSQALRKLTASINKSHTMVIFINQIRMKIG 168


>gi|112791562|gb|ABI22051.1| recombinase A [Serratia marcescens]
          Length = 194

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 137/194 (70%), Positives = 169/194 (87%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L R
Sbjct: 1   LTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ
Sbjct: 61  SGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQ 120

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK++D + G++TRVKVVKNK+A+P
Sbjct: 121 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKERDKVVGSETRVKVVKNKIAAP 180

Query: 263 FKQVEFDIMYGEGI 276
           FKQ EF IMYGEGI
Sbjct: 181 FKQAEFQIMYGEGI 194


>gi|218661201|ref|ZP_03517131.1| recombinase A [Rhizobium etli IE4771]
          Length = 148

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 101/146 (69%), Positives = 119/146 (81%)

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           SPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQTRVKVVKNKMA PFKQVEFDIMY
Sbjct: 2   SPETTTGGNALKFYASVRLDIRRIGSVKEREEVIGNQTRVKVVKNKMAPPFKQVEFDIMY 61

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           GEG+S  GEL+DLGVKA IV+KSGAWFS+  QRLGQGREN+K FLR+N ++A  IE  LR
Sbjct: 62  GEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGRENAKTFLRDNPDLAREIELALR 121

Query: 333 QNAGLVADSLLQEPAINTKDDADKDD 358
           QNAGL+AD  LQ    +  D     +
Sbjct: 122 QNAGLIADRFLQNGGPDADDGDSAAE 147


>gi|50982193|gb|AAT91762.1| recombination protein A [Bradyrhizobium canariense bv. genistearum]
          Length = 170

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 125/171 (73%), Positives = 149/171 (87%), Gaps = 1/171 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A+ Q
Sbjct: 1   MKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEGQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VID
Sbjct: 60  KKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           SVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++F NQ+
Sbjct: 120 SVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFFNQI 170


>gi|163960883|gb|ABY49986.1| recombination protein A [Bradyrhizobium sp. CCBAU 85057]
          Length = 160

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 126/158 (79%), Positives = 147/158 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSLGLDIALG+GG P+GR++EIYGPESSGKTTLALHTIA++QK GG CAFVDA
Sbjct: 3   EIETISTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTTLALHTIAEAQKKGGVCAFVDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGV+L +LLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEI
Sbjct: 63  EHALDPVYARKLGVNLDDLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           EG+MG+  PG+QARLMSQALRKLT+SISRS C+++FIN
Sbjct: 123 EGEMGDVQPGLQARLMSQALRKLTASISRSNCMVIFIN 160


>gi|307343376|emb|CBJ18129.1| recombinase A [Micromonospora sp. GUI13]
          Length = 179

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 126/179 (70%), Positives = 152/179 (84%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG P+GR+VE+YGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGVGGLPRGRVVEVYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   +L+SQPDTGEQALEI DML+R+GA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDAMLVSQPDTGEQALEIADMLIRAGALDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
            G+QAR MSQALRK+T  +S +    +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR
Sbjct: 121 VGLQARGMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVR 179


>gi|18076847|emb|CAC87590.1| recA protein [Pseudomonas fluorescens]
 gi|18076849|emb|CAC87591.1| recA protein [Pseudomonas fluorescens]
 gi|18076851|emb|CAC87592.1| recA protein [Pseudomonas fluorescens]
 gi|18076855|emb|CAC87594.1| recA protein [Pseudomonas fluorescens]
 gi|18076857|emb|CAC87595.1| recA protein [Pseudomonas fluorescens]
 gi|18076875|emb|CAC87604.1| recA protein [Pseudomonas tolaasii]
          Length = 199

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 142/199 (71%), Positives = 173/199 (86%)

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+
Sbjct: 1   VIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAI 60

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMK
Sbjct: 61  DVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q 
Sbjct: 121 IGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQA 180

Query: 267 EFDIMYGEGISFFGELIDL 285
           EF I+YG+GI   GE+IDL
Sbjct: 181 EFQILYGKGIYLNGEMIDL 199


>gi|158905837|gb|ABW82568.1| RecA [Bradyrhizobiaceae bacterium NS20]
          Length = 167

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 124/161 (77%), Positives = 148/161 (91%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           EVVSSGSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALH +A++QK GG CAFVDAEH
Sbjct: 1   EVVSSGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHCVAEAQKKGGICAFVDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGV++  LLISQPD GEQALEI D LVRSGAVD+++IDSVAAL PRAE+EG
Sbjct: 61  ALDPVYARKLGVNVDELLISQPDHGEQALEIADTLVRSGAVDVLIIDSVAALVPRAELEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           +MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 161


>gi|322510287|gb|ADX05529.1| recombination protein A [Sinorhizobium sp. CCBAU 05643]
          Length = 166

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 134/163 (82%), Positives = 152/163 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDA
Sbjct: 3   EIETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEI
Sbjct: 63  EHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           EG+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 123 EGEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 165


>gi|160425373|gb|ABX39528.1| RecA [Bradyrhizobium sp. SEMIA 6144]
          Length = 170

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 126/171 (73%), Positives = 151/171 (88%), Gaps = 1/171 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG +      IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++Q
Sbjct: 1   MKLG-KSDRSMDIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+D
Sbjct: 60  KKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           SVAAL P+A +EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 120 SVAALVPKARLEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 170


>gi|118405783|gb|ABK81257.1| recombinase A [Azomonas macrocytogenes]
 gi|118405799|gb|ABK81265.1| recombinase A [Azomonas macrocytogenes]
          Length = 196

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 139/193 (72%), Positives = 170/193 (88%)

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++
Sbjct: 4   QKQGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIV 63

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAAL P+AEIEG+MG++  G+QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMF
Sbjct: 64  DSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMF 123

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           GSPETTTGGNALKFY+SVRLDIRR+G++KD D + G++TRVKVVKNK+A PF+Q EF I+
Sbjct: 124 GSPETTTGGNALKFYASVRLDIRRIGAVKDSDEVIGSETRVKVVKNKVAPPFRQAEFQIL 183

Query: 272 YGEGISFFGELID 284
           YG+GI   GE+ID
Sbjct: 184 YGKGIYRNGEVID 196


>gi|163960898|gb|ABY49993.1| recombination protein A [Mesorhizobium mediterraneum]
          Length = 160

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 127/157 (80%), Positives = 146/157 (92%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDA
Sbjct: 3   EIETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEI
Sbjct: 63  EHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           EG+MG+SLPG+QARLMSQALRKLT+SISRS  +++FI
Sbjct: 123 EGEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFI 159


>gi|163960885|gb|ABY49987.1| recombination protein A [Bradyrhizobium sp. CCBAU 85058]
          Length = 158

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 127/158 (80%), Positives = 147/158 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE VS+GSLGLDIALG+GG P+GR++EIYGPESSGKTTLALHTIA++QK GG CAFVDA
Sbjct: 1   EIETVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTTLALHTIAEAQKKGGVCAFVDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGV+L +LLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEI
Sbjct: 61  EHALDPVYARKLGVNLDDLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           EG+MG+  PG+QARLMSQALRKLT+SISRS C+++FIN
Sbjct: 121 EGEMGDVQPGLQARLMSQALRKLTASISRSNCMVIFIN 158


>gi|163960857|gb|ABY49973.1| recombination protein A [Rhizobium leguminosarum]
          Length = 160

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 127/158 (80%), Positives = 147/158 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDA
Sbjct: 3   EIETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAE 
Sbjct: 63  EHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEF 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           EG+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FIN
Sbjct: 123 EGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFIN 160


>gi|158147273|gb|ABW22690.1| recA [Rhizobium etli]
          Length = 159

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 130/159 (81%), Positives = 150/159 (94%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +S+GSLGLDIALG+GG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEH
Sbjct: 1   ETISTGSLGLDIALGVGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG
Sbjct: 61  ALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           +MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+R
Sbjct: 121 EMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIR 159


>gi|289812955|gb|ADD20937.1| recombinase A [Bradyrhizobium sp. CCBAU 61434]
          Length = 163

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 122/163 (74%), Positives = 149/163 (91%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E VS+GSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DA
Sbjct: 1   DVETVSTGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGA+D++V+DSVAAL P+AE+
Sbjct: 61  EHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALVPKAEL 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 EGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 163


>gi|213012364|gb|ACJ38748.1| recombination-repair protein [Vibrio mediterranei]
          Length = 192

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 136/192 (70%), Positives = 168/192 (87%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA +QK G TCAF+DAEHALD IYA+KLGVD+ +LL+SQPDTGEQALEI D L 
Sbjct: 1   TLTLECIAGAQKQGKTCAFIDAEHALDPIYAKKLGVDIDSLLVSQPDTGEQALEICDALA 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FIN
Sbjct: 61  RSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFIN 120

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+
Sbjct: 121 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAA 180

Query: 262 PFKQVEFDIMYG 273
           PFKQ E  I+YG
Sbjct: 181 PFKQAETQILYG 192


>gi|18076837|emb|CAC87585.1| recA protein [Pseudomonas aurantiaca]
 gi|18076839|emb|CAC87586.1| recA protein [Pseudomonas chlororaphis]
 gi|18076841|emb|CAC87587.1| recA protein [Pseudomonas chlororaphis]
          Length = 199

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 142/199 (71%), Positives = 173/199 (86%)

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+
Sbjct: 1   VIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAI 60

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMK
Sbjct: 61  DVIVIDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVK+VKNK+A PF+Q 
Sbjct: 121 IGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKIVKNKVAPPFRQA 180

Query: 267 EFDIMYGEGISFFGELIDL 285
           EF I+YG+GI   GE+IDL
Sbjct: 181 EFQILYGKGIYLNGEIIDL 199


>gi|322510293|gb|ADX05532.1| recombination protein A [Sinorhizobium fredii]
          Length = 166

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 136/163 (83%), Positives = 152/163 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDA
Sbjct: 3   EIETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEI
Sbjct: 63  EHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           EG+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 123 EGEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 165


>gi|193090223|gb|ACF15283.1| recombination protein A [Bradyrhizobium sp. CCBAU 65718]
          Length = 167

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 131/167 (78%), Positives = 154/167 (92%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DA
Sbjct: 1   DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+
Sbjct: 61  EHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAEL 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIGVM
Sbjct: 121 EGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVM 167


>gi|298566930|gb|ADI86541.1| recombination protein A [Rhizobium etli]
          Length = 161

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 138/161 (85%), Positives = 154/161 (95%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHAL
Sbjct: 1   VSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+M
Sbjct: 61  DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIG
Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 161


>gi|322510285|gb|ADX05528.1| recombination protein A [Sinorhizobium sp. CCBAU 05583]
          Length = 165

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 134/163 (82%), Positives = 152/163 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDA
Sbjct: 2   EIETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEI
Sbjct: 62  EHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEI 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           EG+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 122 EGEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 164


>gi|170676514|gb|ACB30410.1| recombinase A [Rhizobium giardinii]
          Length = 167

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 136/164 (82%), Positives = 154/164 (93%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHA
Sbjct: 4   TVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHA 63

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAAL PRAEIEG+
Sbjct: 64  LDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALVPRAEIEGE 123

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 124 MGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 167


>gi|289812929|gb|ADD20925.1| recombinase A [Bradyrhizobium sp. CCBAU 23160]
          Length = 165

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 122/163 (74%), Positives = 149/163 (91%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E VS+GSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DA
Sbjct: 2   DVETVSTGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGA+D++V+DSVAAL P+AE+
Sbjct: 62  EHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALVPKAEL 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 122 EGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 164


>gi|213012564|gb|ACJ38848.1| recombination-repair protein [Vibrio mediterranei]
          Length = 192

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 137/191 (71%), Positives = 168/191 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAF+DAEHALD IYA+KLGVD+ +LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPIYAKKLGVDIDSLLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            + INQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVK
Sbjct: 121 CILINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVE 267
           NK+A+PFKQ E
Sbjct: 181 NKIAAPFKQAE 191


>gi|213012406|gb|ACJ38769.1| recombination-repair protein [Vibrio sp. R-618]
 gi|213012420|gb|ACJ38776.1| recombination-repair protein [Vibrio sp. R-629]
 gi|213012452|gb|ACJ38792.1| recombination-repair protein [Vibrio campbellii]
 gi|213012482|gb|ACJ38807.1| recombination-repair protein [Vibrio sp. R-669]
 gi|213012506|gb|ACJ38819.1| recombination-repair protein [Vibrio rotiferianus]
 gi|213012536|gb|ACJ38834.1| recombination-repair protein [Vibrio sp. R-699]
          Length = 195

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 135/195 (69%), Positives = 169/195 (86%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIM 271
           NK+A+PFK+    IM
Sbjct: 181 NKIAAPFKEANTQIM 195


>gi|25992237|gb|AAN77112.1| recombinase A [Desulfitobacterium dehalogenans ATCC 51507]
          Length = 192

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 129/192 (67%), Positives = 162/192 (84%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ALH  A +QK GG  AF+DAEHALD +YA+ LGV++ NLL+SQPDTGEQALEI
Sbjct: 1   SSGKTTVALHIAADAQKLGGVAAFIDAEHALDPVYAKALGVNIDNLLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            + LVRSGA+D+++IDSVAAL PRAEIEG+MG+S  G+ ARLMSQALRKLT +IS+S   
Sbjct: 61  CEALVRSGAIDVVIIDSVAALVPRAEIEGEMGDSHVGLHARLMSQALRKLTGAISKSNTC 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+R K+G+MFG+PETTTGG ALKFY+SVRL++RR  ++K    + GN+T+VKVVK
Sbjct: 121 VIFINQIREKVGIMFGNPETTTGGRALKFYASVRLEVRRQDTLKQGQDMIGNRTKVKVVK 180

Query: 257 NKMASPFKQVEF 268
           NK+A PFKQ EF
Sbjct: 181 NKVAPPFKQAEF 192


>gi|158147281|gb|ABW22694.1| recA [Sinorhizobium sp. CCBAU 83647]
 gi|158147297|gb|ABW22702.1| recA [Sinorhizobium sp. CCBAU 83742]
 gi|158147301|gb|ABW22704.1| recA [Sinorhizobium sp. CCBAU 83753]
 gi|158147303|gb|ABW22705.1| recA [Sinorhizobium sp. CCBAU 83765]
          Length = 165

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 136/163 (83%), Positives = 152/163 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDA
Sbjct: 3   EIETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEI
Sbjct: 63  EHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           EG+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 123 EGEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 165


>gi|213012320|gb|ACJ38726.1| recombination-repair protein [Vibrio mediterranei]
          Length = 193

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 135/192 (70%), Positives = 167/192 (86%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L
Sbjct: 1   TTLTLECIAAAQKAGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FI
Sbjct: 61  ARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIA 180

Query: 261 SPFKQVEFDIMY 272
           +PFKQ E  I+Y
Sbjct: 181 APFKQAETQILY 192


>gi|170676512|gb|ACB30409.1| recombinase A [Rhizobium giardinii]
          Length = 167

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 138/164 (84%), Positives = 155/164 (94%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHA
Sbjct: 4   TVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHA 63

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIEG+
Sbjct: 64  LDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGE 123

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 124 MGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 167


>gi|25992235|gb|AAN77111.1| recombinase A [Desulfitobacterium chlororespirans]
          Length = 192

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 130/192 (67%), Positives = 163/192 (84%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ALH  A++QK GG  AF+DAEHALD +YA+ LGV++ NLL+SQPDTGEQALEI
Sbjct: 1   SSGKTTVALHIAAEAQKLGGVAAFIDAEHALDPVYAKALGVNIDNLLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            + LVRSGA+D+I+IDSVAAL PRAEIEG+MG+S  G+ ARLMSQALRKLT +IS+S   
Sbjct: 61  CEALVRSGAIDVIIIDSVAALVPRAEIEGEMGDSHVGLHARLMSQALRKLTGAISKSHTC 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+R K+G+MFG+PETTTGG ALKFY+SVRL++RR  ++K    + GN+T+VKVVK
Sbjct: 121 VIFINQIREKVGIMFGNPETTTGGRALKFYASVRLEVRRQDTLKQGQDMIGNRTKVKVVK 180

Query: 257 NKMASPFKQVEF 268
           NK+A PFKQ EF
Sbjct: 181 NKVAPPFKQAEF 192


>gi|158631788|gb|ABW74999.1| RecA [Rhizobium sp. CCBAU 83514]
          Length = 167

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 130/164 (79%), Positives = 151/164 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GSLGLDIALG+GG P+GRI+  Y  ESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 1   IETISTGSLGLDIALGVGGLPRGRIINPYRKESSGKTTLALQTIAEAQKKGGICAFVDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE
Sbjct: 61  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIG
Sbjct: 121 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIG 164


>gi|18076873|emb|CAC87603.1| recA protein [Pseudomonas syringae]
          Length = 199

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 140/199 (70%), Positives = 172/199 (86%)

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+
Sbjct: 1   VIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAI 60

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVA L P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMK
Sbjct: 61  DVIVVDSVAVLVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q 
Sbjct: 121 IGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQA 180

Query: 267 EFDIMYGEGISFFGELIDL 285
           EF I+YG+GI   GE++DL
Sbjct: 181 EFQILYGKGIYLNGEIVDL 199


>gi|322510289|gb|ADX05530.1| recombination protein A [Sinorhizobium sp. CCBAU 05593]
          Length = 164

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 134/163 (82%), Positives = 152/163 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDA
Sbjct: 2   EIETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEI
Sbjct: 62  EHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEI 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           EG+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 122 EGEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 164


>gi|158631786|gb|ABW74998.1| RecA [Rhizobium sp. CCBAU 83490]
          Length = 168

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 132/167 (79%), Positives = 154/167 (92%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSLGLDIALG+GG P+GRI++IYG ESSGKTTLAL TIA++QK GG CAFVDA
Sbjct: 2   EIETISTGSLGLDIALGVGGLPRGRIIKIYGKESSGKTTLALQTIAEAQKKGGICAFVDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEI
Sbjct: 62  EHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEI 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           EG+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMK  VM
Sbjct: 122 EGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKSAVM 168


>gi|119691895|gb|ABL95844.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691897|gb|ABL95845.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691899|gb|ABL95846.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691901|gb|ABL95847.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691903|gb|ABL95848.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691905|gb|ABL95849.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691907|gb|ABL95850.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691909|gb|ABL95851.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691911|gb|ABL95852.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691913|gb|ABL95853.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691915|gb|ABL95854.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691917|gb|ABL95855.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691919|gb|ABL95856.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691921|gb|ABL95857.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691923|gb|ABL95858.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691925|gb|ABL95859.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691927|gb|ABL95860.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691929|gb|ABL95861.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691931|gb|ABL95862.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691933|gb|ABL95863.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691935|gb|ABL95864.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691937|gb|ABL95865.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691939|gb|ABL95866.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691941|gb|ABL95867.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691943|gb|ABL95868.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691945|gb|ABL95869.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691947|gb|ABL95870.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691949|gb|ABL95871.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691951|gb|ABL95872.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691953|gb|ABL95873.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691955|gb|ABL95874.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691957|gb|ABL95875.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691959|gb|ABL95876.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691961|gb|ABL95877.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691963|gb|ABL95878.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691965|gb|ABL95879.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691967|gb|ABL95880.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691969|gb|ABL95881.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691971|gb|ABL95882.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691973|gb|ABL95883.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691975|gb|ABL95884.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691977|gb|ABL95885.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691979|gb|ABL95886.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691981|gb|ABL95887.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691983|gb|ABL95888.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691985|gb|ABL95889.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691987|gb|ABL95890.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691989|gb|ABL95891.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691991|gb|ABL95892.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691993|gb|ABL95893.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691995|gb|ABL95894.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691997|gb|ABL95895.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119691999|gb|ABL95896.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692001|gb|ABL95897.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692003|gb|ABL95898.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692005|gb|ABL95899.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692007|gb|ABL95900.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692009|gb|ABL95901.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692011|gb|ABL95902.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692013|gb|ABL95903.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692015|gb|ABL95904.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692017|gb|ABL95905.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692019|gb|ABL95906.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692021|gb|ABL95907.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692023|gb|ABL95908.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692025|gb|ABL95909.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692027|gb|ABL95910.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692029|gb|ABL95911.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692031|gb|ABL95912.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692033|gb|ABL95913.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692035|gb|ABL95914.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692037|gb|ABL95915.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692039|gb|ABL95916.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692041|gb|ABL95917.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692043|gb|ABL95918.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692045|gb|ABL95919.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692047|gb|ABL95920.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692049|gb|ABL95921.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692051|gb|ABL95922.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692053|gb|ABL95923.1| RecA [Aggregatibacter actinomycetemcomitans HK1651]
 gi|119692055|gb|ABL95924.1| RecA [Aggregatibacter actinomycetemcomitans]
 gi|119692057|gb|ABL95925.1| RecA [Aggregatibacter actinomycetemcomitans]
          Length = 165

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 122/167 (73%), Positives = 142/167 (85%), Gaps = 2/167 (1%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKGAIM+LG    +   IE +S+GS GLD+ALGIGG P GRIVEI+GPESSGKTTL
Sbjct: 1   EKQFGKGAIMKLGDSQKL--DIEAISTGSFGLDLALGIGGLPMGRIVEIFGPESSGKTTL 58

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA++QKTG TCAF+DAEHALD IYA KLGVD+K LL+SQPD GEQALEI D LVRS
Sbjct: 59  TLSVIAEAQKTGKTCAFIDAEHALDPIYASKLGVDVKELLVSQPDNGEQALEICDALVRS 118

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           GAVD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLTS I
Sbjct: 119 GAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTSQI 165


>gi|195542200|gb|ACF98310.1| RecA [Sinorhizobium meliloti]
          Length = 166

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 137/163 (84%), Positives = 152/163 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDA
Sbjct: 4   EIETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDA 63

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VIDSVAAL PRAEI
Sbjct: 64  EHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVIDSVAALVPRAEI 123

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           EG+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 124 EGEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 166


>gi|29651973|gb|AAO87649.1| RecA [Listeria monocytogenes]
 gi|29652013|gb|AAO87669.1| RecA [Listeria monocytogenes]
          Length = 169

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 115/171 (67%), Positives = 142/171 (83%), Gaps = 2/171 (1%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG      + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA+ Q
Sbjct: 1   MKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEVQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
             GGT AF+DAEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRSGAVD++VID
Sbjct: 59  AQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           SVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+
Sbjct: 119 SVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQI 169


>gi|25992233|gb|AAN77110.1| recombinase A [Desulfitobacterium hafniense DCB-2]
 gi|25992239|gb|AAN77113.1| recombinase A [Desulfitobacterium hafniense]
 gi|25992245|gb|AAN77116.1| recombinase A [Desulfitobacterium hafniense DP7]
          Length = 192

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 130/192 (67%), Positives = 163/192 (84%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ALH  A++QK GG  AF+DAEHALD +YA+ LGV++ NLL+SQPDTGEQALEI
Sbjct: 1   SSGKTTVALHIAAEAQKLGGVAAFIDAEHALDPVYAKALGVNIDNLLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            + LVRSGA+D+I+IDSVAAL PRAEIEG+MG+S  G+ ARLMSQALRKLT +IS+S   
Sbjct: 61  CEALVRSGAIDVIIIDSVAALVPRAEIEGEMGDSHVGLHARLMSQALRKLTGAISKSNTC 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+R K+G+MFG+PETTTGG ALKFY+SVRL++RR  ++K    + GN+T+VKVVK
Sbjct: 121 VIFINQIREKVGIMFGNPETTTGGRALKFYASVRLEVRRADTLKQGQDMIGNRTKVKVVK 180

Query: 257 NKMASPFKQVEF 268
           NK+A PFKQ EF
Sbjct: 181 NKVAPPFKQAEF 192


>gi|158632174|gb|ABW75483.1| RecA [Rhizobium multihospitium]
          Length = 161

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 134/161 (83%), Positives = 153/161 (95%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL
Sbjct: 1   VSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+M
Sbjct: 61  DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIG
Sbjct: 121 GDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 161


>gi|213012480|gb|ACJ38806.1| recombination-repair protein [Vibrio sp. R-668]
          Length = 192

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 133/190 (70%), Positives = 167/190 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQV 266
           NK+A+PFK+ 
Sbjct: 181 NKIAAPFKEA 190


>gi|289190624|gb|ADC93417.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-14]
          Length = 169

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 125/170 (73%), Positives = 151/170 (88%), Gaps = 1/170 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG +      IE VSSGSLGLDIALGIGG P+GRIVEIYGPESSGKTTLALHT+A++QK
Sbjct: 1   KLG-KSDRSMDIEAVSSGSLGLDIALGIGGLPRGRIVEIYGPESSGKTTLALHTVAEAQK 59

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DS
Sbjct: 60  KGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDS 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           VAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 120 VAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169


>gi|25992241|gb|AAN77114.1| recombinase A [Desulfitobacterium sp. PCE1]
          Length = 192

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 129/192 (67%), Positives = 163/192 (84%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ALH  A++QK GG  AF+DAEHALD +YA+ LGV++ NLL+SQPDTGEQALEI
Sbjct: 1   SSGKTTVALHIAAEAQKLGGVAAFIDAEHALDPVYAKALGVNIDNLLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            + LVRSGA+D+++IDSVAAL PRAEIEG+MG+S  G+ ARLMSQALRKLT +IS+S   
Sbjct: 61  CEALVRSGAIDVVIIDSVAALVPRAEIEGEMGDSHVGLHARLMSQALRKLTGAISKSNTC 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+R K+G+MFG+PETTTGG ALKFY+SVRL++RR  ++K    + GN+T+VKVVK
Sbjct: 121 VIFINQIREKVGIMFGNPETTTGGRALKFYASVRLEVRRQDTLKQGQDMIGNRTKVKVVK 180

Query: 257 NKMASPFKQVEF 268
           NK+A PFKQ EF
Sbjct: 181 NKVAPPFKQAEF 192


>gi|298566894|gb|ADI86523.1| recombination protein A [Sinorhizobium sp. CCBAU 05672]
          Length = 160

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 133/160 (83%), Positives = 152/160 (95%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A++QK GG CAFVDAEHAL
Sbjct: 1   VSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAEAQKKGGICAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M
Sbjct: 61  DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKI
Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKI 160


>gi|289812919|gb|ADD20920.1| recombinase A [Bradyrhizobium elkanii]
          Length = 165

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 124/163 (76%), Positives = 149/163 (91%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DA
Sbjct: 2   DVETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+
Sbjct: 62  EHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAEL 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 122 EGEMGDALPGLQARLMSQALRKLTASINKSHTMVIFINQIRMK 164


>gi|158632170|gb|ABW75481.1| RecA [Rhizobium multihospitium]
          Length = 162

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 132/160 (82%), Positives = 151/160 (94%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHA
Sbjct: 1   TVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+
Sbjct: 61  LDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 121 MGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMK 160


>gi|213012478|gb|ACJ38805.1| recombination-repair protein [Vibrio sp. R-667]
 gi|213012548|gb|ACJ38840.1| recombination-repair protein [Vibrio sp. R-709]
          Length = 193

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 133/190 (70%), Positives = 167/190 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFKQV 266
           NK+A+PFK+ 
Sbjct: 181 NKIAAPFKEA 190


>gi|18076835|emb|CAC87584.1| recA protein [Pseudomonas agarici]
 gi|18076853|emb|CAC87593.1| recA protein [Pseudomonas fluorescens]
          Length = 199

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 143/199 (71%), Positives = 174/199 (87%)

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AV
Sbjct: 1   VIAQAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAV 60

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMK
Sbjct: 61  DVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+ASPF+Q 
Sbjct: 121 IGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVASPFRQA 180

Query: 267 EFDIMYGEGISFFGELIDL 285
           EF I+YG+GI   GE+IDL
Sbjct: 181 EFQILYGKGIYLNGEMIDL 199


>gi|298566910|gb|ADI86531.1| recombination protein A [Sinorhizobium sp. CCBAU 05631]
          Length = 163

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 136/163 (83%), Positives = 155/163 (95%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A++QK GG CAFVDAEHAL
Sbjct: 1   VSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAEAQKKGGICAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M
Sbjct: 61  DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 163


>gi|68637444|emb|CAF21821.1| recombinase A [Pediococcus claussenii]
          Length = 177

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 119/177 (67%), Positives = 150/177 (84%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  + SGSL LD ALG+GGFPKGRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DA
Sbjct: 1   KISTIPSGSLALDEALGVGGFPKGRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+A+D +YA+ LGV++  LL+SQPDTGE+ LEI D LV SGA+D++VIDSVAAL PRAEI
Sbjct: 61  ENAMDPVYAQNLGVNIDELLLSQPDTGEEGLEIADALVSSGAIDLVVIDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
           +G+MG++  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PE T GG
Sbjct: 121 DGEMGDAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGVMFGNPEATPGG 177


>gi|312284964|gb|ADQ64234.1| recombinase A [Bradyrhizobium sp. LmjA2]
 gi|312284968|gb|ADQ64236.1| recombinase A [Bradyrhizobium sp. LmjH2p]
 gi|312284982|gb|ADQ64243.1| recombinase A [Bradyrhizobium sp. LmjB2b]
 gi|312284984|gb|ADQ64244.1| recombinase A [Bradyrhizobium sp. LmjB3]
          Length = 165

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 122/166 (73%), Positives = 147/166 (88%), Gaps = 1/166 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG++M+LG        +E +SSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT
Sbjct: 1   GKGSVMKLGKNDRSM-DVETISSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHT 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           +A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD
Sbjct: 60  VAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVD 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 120 VLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 165


>gi|289190626|gb|ADC93418.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-21]
 gi|289190628|gb|ADC93419.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-18]
          Length = 169

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 124/170 (72%), Positives = 149/170 (87%), Gaps = 1/170 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG        +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+ QK
Sbjct: 1   KLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAEGQK 59

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DS
Sbjct: 60  KGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDS 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           VAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 120 VAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169


>gi|116335012|ref|YP_802507.1| RecA recombinase [Candidatus Carsonella ruddii PV]
 gi|116235293|dbj|BAF35141.1| RecA recombinase [Candidatus Carsonella ruddii PV]
          Length = 296

 Score =  176 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 117/294 (39%), Positives = 187/294 (63%), Gaps = 10/294 (3%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +E +S+GSL +D  LGIGG P GRI+EIYG ESSGKTT A   I ++QK G  CA++
Sbjct: 7   LKNVEFISTGSLNVDFILGIGGLPYGRIIEIYGQESSGKTTFAFSIIKEAQKVGDICAYI 66

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           D EH +D  Y   LG++LK LLI QP+ GE+  EI+  L+ S  V +I+IDS+AA+ P  
Sbjct: 67  DVEHCIDVNYIENLGINLKTLLIFQPENGEKVFEISQKLINSTYVKLIIIDSIAAIIPEL 126

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
           EI     ++  G  +R +S+ L+K+   + ++  +L+ INQ+R+KI   F + E +TGGN
Sbjct: 127 EIYN--NDNNIGSHSRFLSKNLKKIIPLLRKNNVLLILINQVRIKI-SNFYNKEISTGGN 183

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE 281
           A+KFYSS+R++++R+G +K K++I G + +V V+KNK++ P++  +  ++Y  GI    E
Sbjct: 184 AVKFYSSIRIELKRIGFLKSKNNIIGQEIKVNVLKNKLSKPYRDTKIYLIYSYGIYKILE 243

Query: 282 LIDLGVKAS---IVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           +I+ G+K +   I+ K    F  + +     ++N    L  N ++ + IES +R
Sbjct: 244 IINFGLKFNLIKIIKKK---FFLENEYF-NNKKNLIKKLMFNKKLLKKIESDIR 293


>gi|158632168|gb|ABW75480.1| RecA [Rhizobium multihospitium]
          Length = 162

 Score =  176 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 133/162 (82%), Positives = 152/162 (93%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+GSL LDIALGIGG PKGRI+EIY PESSGKTTLAL TIA++QK GG CAFVDAEHA
Sbjct: 1   TVSTGSLSLDIALGIGGLPKGRIIEIYRPESSGKTTLALQTIAEAQKKGGICAFVDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+
Sbjct: 61  LDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIG
Sbjct: 121 MGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 162


>gi|18076859|emb|CAC87596.1| recA protein [Pseudomonas marginalis]
          Length = 199

 Score =  176 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 141/199 (70%), Positives = 173/199 (86%)

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IAQ+QK G +CAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+
Sbjct: 1   VIAQAQKMGASCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAI 60

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IV+DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMK
Sbjct: 61  DVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q 
Sbjct: 121 IGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQA 180

Query: 267 EFDIMYGEGISFFGELIDL 285
           EF I+YG+GI   GE+IDL
Sbjct: 181 EFQILYGKGIYLNGEMIDL 199


>gi|299737708|gb|ADJ37177.1| recombinase A [Bradyrhizobium yuanmingense]
          Length = 173

 Score =  176 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 129/168 (76%), Positives = 153/168 (91%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
           G+   GIE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG C
Sbjct: 1   GNDAHGIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGIC 60

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL 
Sbjct: 61  AFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALV 120

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 PKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 168


>gi|183585346|gb|ACC63987.1| recombinase [Clostridium perfringens]
          Length = 158

 Score =  176 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 107/157 (68%), Positives = 135/157 (85%)

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
            D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT +I++S C+++FINQ+R 
Sbjct: 2   YDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGTINKSNCVVIFINQLRE 61

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           K+G+MFG+PETT GG ALKFY+SVR+DIRR+ SIK  D ITGN+TRVK+VKNK+A PFKQ
Sbjct: 62  KVGIMFGNPETTPGGRALKFYASVRMDIRRIDSIKQGDGITGNRTRVKIVKNKVAPPFKQ 121

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
            EFDIMY EGIS  G ++D+GVK +IV KSGAW+S+ 
Sbjct: 122 AEFDIMYNEGISKEGNIVDVGVKENIVQKSGAWYSYG 158


>gi|158198587|gb|ABW23447.1| RecA [Bradyrhizobium japonicum]
          Length = 169

 Score =  176 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 129/167 (77%), Positives = 154/167 (92%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DA
Sbjct: 3   DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+
Sbjct: 63  EHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAEL 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIGVM
Sbjct: 123 EGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVM 169


>gi|158198585|gb|ABW23446.1| RecA [Bradyrhizobium japonicum]
          Length = 168

 Score =  176 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 129/167 (77%), Positives = 154/167 (92%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DA
Sbjct: 2   DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+
Sbjct: 62  EHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAEL 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIGVM
Sbjct: 122 EGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVM 168


>gi|289190686|gb|ADC93448.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-11]
          Length = 169

 Score =  176 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 129/170 (75%), Positives = 152/170 (89%), Gaps = 1/170 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG +      IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK
Sbjct: 1   KLG-KSDRSMDIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQK 59

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG CAF+DAEHALD +YARKLGV++ +LLISQPDTGEQALEI D LVRSGAVD++VIDS
Sbjct: 60  KGGICAFIDAEHALDPVYARKLGVNIDDLLISQPDTGEQALEICDTLVRSGAVDVLVIDS 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           VAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 120 VAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMVIFINQI 169


>gi|25992243|gb|AAN77115.1| recombinase A [Desulfitobacterium sp. Viet-1]
          Length = 192

 Score =  176 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 130/192 (67%), Positives = 163/192 (84%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ALH  A++QK GG  AF+DAEHALD +YA+ LGV++ NLL+SQPDTGEQALEI
Sbjct: 1   SSGKTTVALHIAAEAQKLGGVAAFIDAEHALDPVYAKALGVNIDNLLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            + LVRSGA+DI++IDSVAAL PRAEIEG+MG+S  G+ ARLMSQALRKLT +IS+S   
Sbjct: 61  CEALVRSGAIDIVIIDSVAALVPRAEIEGEMGDSHVGLHARLMSQALRKLTGAISKSNTC 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++FINQ+R K+G+MFG+PETTTGG ALKFY+SVRL++RR  ++K    + GN+T+VKVVK
Sbjct: 121 VIFINQIREKVGIMFGNPETTTGGRALKFYASVRLEVRRQDTLKQGQDMIGNRTKVKVVK 180

Query: 257 NKMASPFKQVEF 268
           NK+A PFKQ EF
Sbjct: 181 NKVAPPFKQAEF 192


>gi|158631760|gb|ABW74985.1| RecA [Bradyrhizobium sp. CCBAU 83386]
          Length = 168

 Score =  176 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 127/165 (76%), Positives = 152/165 (92%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DA
Sbjct: 4   DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDA 63

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+
Sbjct: 64  EHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAEL 123

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIG
Sbjct: 124 EGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIG 168


>gi|254169587|gb|ACT64884.1| recombinase A [Rhizobium soli]
          Length = 164

 Score =  176 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 138/165 (83%), Positives = 151/165 (91%), Gaps = 1/165 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LGS  SI E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA+
Sbjct: 1   SIMKLGSNDSIVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAFVDAEHALD +YARKLGVDL NLLISQPDTGEQALEITD LVRSGAVD++V
Sbjct: 60  AQKGGGVCAFVDAEHALDPVYARKLGVDLHNLLISQPDTGEQALEITDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           IDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+SK 
Sbjct: 120 IDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSKT 164


>gi|289812935|gb|ADD20928.1| recombinase A [Rhizobium sp. CCBAU 51330]
          Length = 160

 Score =  176 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 133/160 (83%), Positives = 152/160 (95%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL
Sbjct: 1   VSTGSLNLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+M
Sbjct: 61  DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           G+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKI
Sbjct: 121 GDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKI 160


>gi|289812944|gb|ADD20932.1| recombinase A [Bradyrhizobium elkanii]
          Length = 163

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 127/163 (77%), Positives = 150/163 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE
Sbjct: 1   VETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E
Sbjct: 61  HALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVRSGAVDVLVIDSVAALVPKAELE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 163


>gi|222544085|gb|ACM66903.1| recombinase A [Mesorhizobium temperatum]
 gi|222544091|gb|ACM66906.1| recombinase A [Mesorhizobium tianshanense]
 gi|222544093|gb|ACM66907.1| recombinase A [Mesorhizobium amorphae]
          Length = 145

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 113/146 (77%), Positives = 132/146 (90%), Gaps = 1/146 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTT
Sbjct: 1   IERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVR
Sbjct: 60  LALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMG 168
           SGA+D++V+DSVAALTPRAEIEG+MG
Sbjct: 120 SGAIDVLVVDSVAALTPRAEIEGEMG 145


>gi|289190610|gb|ADC93410.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-20]
 gi|289190644|gb|ADC93427.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-19]
 gi|289190682|gb|ADC93446.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-19]
 gi|289190692|gb|ADC93451.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-20]
          Length = 169

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 125/170 (73%), Positives = 149/170 (87%), Gaps = 1/170 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG        +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+ QK
Sbjct: 1   KLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAEGQK 59

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDS
Sbjct: 60  KGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDS 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           VAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 120 VAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169


>gi|289812915|gb|ADD20918.1| recombinase A [Bradyrhizobium japonicum]
          Length = 164

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 125/163 (76%), Positives = 150/163 (92%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DA
Sbjct: 2   DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+
Sbjct: 62  EHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAEL 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 122 EGEMGDALPGLQARLMSQALRKLTASINKSHTMVIFINQIRMK 164


>gi|213012338|gb|ACJ38735.1| recombination-repair protein [Vibrio tubiashii]
          Length = 192

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 134/191 (70%), Positives = 166/191 (86%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L 
Sbjct: 1   TLTLEVIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALA 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FIN
Sbjct: 61  RSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFIN 120

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+
Sbjct: 121 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAA 180

Query: 262 PFKQVEFDIMY 272
           PFKQ E  I+Y
Sbjct: 181 PFKQAETQILY 191


>gi|289190634|gb|ADC93422.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-2]
 gi|289190640|gb|ADC93425.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-2]
          Length = 169

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 126/170 (74%), Positives = 150/170 (88%), Gaps = 1/170 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG        IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK
Sbjct: 1   KLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQK 59

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DS
Sbjct: 60  KGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDS 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           VAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 120 VAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169


>gi|289812933|gb|ADD20927.1| recombinase A [Rhizobium sp. CCBAU 53004-5]
          Length = 160

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 132/160 (82%), Positives = 151/160 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSL LDIALGIGG PKGRI+EI GPESSGKTTLAL TIA++QK GG CAFVDAEHAL
Sbjct: 1   VSTGSLSLDIALGIGGLPKGRIIEILGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+M
Sbjct: 61  DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           G+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKI
Sbjct: 121 GDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKI 160


>gi|289812946|gb|ADD20933.1| recombinase A [Bradyrhizobium japonicum]
          Length = 163

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 127/162 (78%), Positives = 150/162 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 1   IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 61  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 162


>gi|146424682|dbj|BAF62101.1| recombinase A [Bradyrhizobium iriomotense]
 gi|289190650|gb|ADC93430.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-10]
 gi|289190658|gb|ADC93434.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-10]
 gi|289190672|gb|ADC93441.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-10]
 gi|289190676|gb|ADC93443.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-13]
 gi|289190696|gb|ADC93453.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-11]
          Length = 169

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 129/170 (75%), Positives = 152/170 (89%), Gaps = 1/170 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG +      IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK
Sbjct: 1   KLG-KSDRSMDIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQK 59

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG CAF+DAEHALD +YARKLGV++ +LLISQPDTGEQALEI D LVRSGAVD++VIDS
Sbjct: 60  KGGICAFIDAEHALDPVYARKLGVNIDDLLISQPDTGEQALEICDTLVRSGAVDVMVIDS 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           VAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 120 VAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMVIFINQI 169


>gi|307343135|emb|CBJ18097.1| recombinase A [Micromonospora auratinigra]
          Length = 179

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 128/179 (71%), Positives = 151/179 (84%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDALLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
            G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALK  +SVR
Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLDASVR 179


>gi|156071390|dbj|BAF75802.1| recombinase A [Bradyrhizobium betae]
 gi|289190714|gb|ADC93462.1| recombinase A protein [Bradyrhizobium betae]
          Length = 169

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 123/170 (72%), Positives = 150/170 (88%), Gaps = 1/170 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG        +E +SSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK
Sbjct: 1   KLGKNDRSM-DVEAISSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQK 59

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DS
Sbjct: 60  KGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDS 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           VAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 120 VAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169


>gi|289190646|gb|ADC93428.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-22]
 gi|289190652|gb|ADC93431.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-22]
          Length = 169

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 124/170 (72%), Positives = 149/170 (87%), Gaps = 1/170 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG        +E +SSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+ QK
Sbjct: 1   KLGKNDRSM-DVETISSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAEGQK 59

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDS
Sbjct: 60  KGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVRSGAVDVLVIDS 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           VAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 120 VAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169


>gi|312284986|gb|ADQ64245.1| recombinase A [Bradyrhizobium sp. LmjB4]
 gi|312284988|gb|ADQ64246.1| recombinase A [Bradyrhizobium sp. LmjB4a]
 gi|312284998|gb|ADQ64251.1| recombinase A [Bradyrhizobium sp. LmjB1]
          Length = 165

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 122/166 (73%), Positives = 147/166 (88%), Gaps = 1/166 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG++M+LG        +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT
Sbjct: 1   GKGSVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHT 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           +A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGA+D
Sbjct: 60  VAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAID 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 120 VLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 165


>gi|289190622|gb|ADC93416.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-5]
 gi|289190648|gb|ADC93429.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-5]
 gi|289190656|gb|ADC93433.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-6]
 gi|289190680|gb|ADC93445.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-8]
 gi|289190684|gb|ADC93447.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-8]
          Length = 169

 Score =  175 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 126/170 (74%), Positives = 151/170 (88%), Gaps = 1/170 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG +      IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK
Sbjct: 1   KLG-KSDRSMDIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQK 59

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DS
Sbjct: 60  KGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDS 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           VAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 120 VAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169


>gi|158905841|gb|ABW82570.1| RecA [Bradyrhizobiaceae bacterium S11]
 gi|158905843|gb|ABW82571.1| RecA [Bradyrhizobiaceae bacterium S28]
          Length = 162

 Score =  175 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 125/162 (77%), Positives = 149/162 (91%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEH
Sbjct: 1   ETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG
Sbjct: 61  ALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSHTMVIFINQIRMKI 162


>gi|298566904|gb|ADI86528.1| recombination protein A [Sinorhizobium fredii]
          Length = 164

 Score =  175 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 135/162 (83%), Positives = 152/162 (93%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHA
Sbjct: 3   TVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHA 62

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+
Sbjct: 63  LDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGE 122

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIG
Sbjct: 123 MGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 164


>gi|289190616|gb|ADC93413.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-15]
          Length = 169

 Score =  175 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 127/170 (74%), Positives = 150/170 (88%), Gaps = 1/170 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG        IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK
Sbjct: 1   KLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQK 59

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDS
Sbjct: 60  KGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDS 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           VAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 120 VAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169


>gi|291172958|gb|ADD82746.1| recombinase A [Rhizobium sp. CCBAU 01209]
          Length = 161

 Score =  175 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 136/161 (84%), Positives = 153/161 (95%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL
Sbjct: 1   VSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIEG+M
Sbjct: 61  DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIG
Sbjct: 121 GDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 161


>gi|213950720|gb|ACJ54605.1| recombination protein A [Bradyrhizobium yuanmingense]
          Length = 166

 Score =  175 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 125/165 (75%), Positives = 146/165 (88%), Gaps = 1/165 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +G+G+IM+LG        IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALH
Sbjct: 2   FGQGSIMKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALH 60

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 61  TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 120

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI 
Sbjct: 121 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASIE 165


>gi|207080813|gb|ACI22750.1| RecA [Rhizobium sp. J3-63]
          Length = 160

 Score =  175 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 131/159 (82%), Positives = 147/159 (92%), Gaps = 1/159 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG+  S+ E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TI
Sbjct: 3   KGSIMKLGANESVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 61

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD+
Sbjct: 62  AEAQKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDV 121

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           +V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT
Sbjct: 122 LVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLT 160


>gi|169883832|gb|ACA98012.1| recombination protein A [Sinorhizobium fredii]
          Length = 167

 Score =  175 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 138/164 (84%), Positives = 154/164 (93%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHA
Sbjct: 4   TVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHA 63

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+
Sbjct: 64  LDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGE 123

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 124 MGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 167


>gi|213950730|gb|ACJ54610.1| recombination protein A [Bradyrhizobium yuanmingense]
          Length = 174

 Score =  175 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 128/172 (74%), Positives = 148/172 (86%), Gaps = 2/172 (1%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG        IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+
Sbjct: 3   KGSIMKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTV 61

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD+
Sbjct: 62  AEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDV 121

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI+      VFI
Sbjct: 122 LVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINN-PTRWVFI 172


>gi|183585344|gb|ACC63986.1| recombinase [Clostridium perfringens]
          Length = 158

 Score =  175 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 107/156 (68%), Positives = 135/156 (86%)

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT +I++S C+++FINQ+R K
Sbjct: 3   DVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGTINKSNCVVIFINQLREK 62

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           +G+MFG+PETT GG ALKFY+SVR+DIRR+ SIK  D ITGN+TRVK+VKNK+A PFKQ 
Sbjct: 63  VGIMFGNPETTPGGRALKFYASVRMDIRRIDSIKQGDGITGNRTRVKIVKNKVAPPFKQA 122

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           EFDIMY EGIS  G ++D+GVK +IV KSGAW+S+ 
Sbjct: 123 EFDIMYNEGISKEGNIVDVGVKENIVQKSGAWYSYG 158


>gi|312284978|gb|ADQ64241.1| recombinase A [Bradyrhizobium sp. ISLU203]
 gi|312284994|gb|ADQ64249.1| recombinase A [Bradyrhizobium sp. ISLU40]
          Length = 165

 Score =  175 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 124/166 (74%), Positives = 148/166 (89%), Gaps = 1/166 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG++M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT
Sbjct: 1   GKGSVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHT 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           +A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD
Sbjct: 60  VAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVD 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 120 VLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 165


>gi|289190630|gb|ADC93420.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-17]
 gi|289190632|gb|ADC93421.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-17]
 gi|289190636|gb|ADC93423.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-17]
          Length = 169

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 125/170 (73%), Positives = 149/170 (87%), Gaps = 1/170 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG        +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+ QK
Sbjct: 1   KLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAEGQK 59

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDS
Sbjct: 60  KGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVRSGAVDVLVIDS 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           VAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 120 VAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169


>gi|289190706|gb|ADC93458.1| recombinase A protein [Bradyrhizobium japonicum]
          Length = 169

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 124/170 (72%), Positives = 150/170 (88%), Gaps = 1/170 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK
Sbjct: 1   KLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQK 59

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DS
Sbjct: 60  KGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDS 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           VAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 120 VAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169


>gi|114150694|gb|ABI51993.1| recombinase A [Pseudomonas fluorescens]
          Length = 192

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 138/192 (71%), Positives = 168/192 (87%)

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IV+DSV
Sbjct: 1   GATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSV 60

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFGSP
Sbjct: 61  AALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSP 120

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           ETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+YG+
Sbjct: 121 ETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQILYGK 180

Query: 275 GISFFGELIDLG 286
           GI   GE+IDLG
Sbjct: 181 GIYLNGEMIDLG 192


>gi|213012488|gb|ACJ38810.1| recombination-repair protein [Vibrio sp. R-672]
          Length = 188

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 133/188 (70%), Positives = 166/188 (88%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPFK 264
           NK+A+PFK
Sbjct: 181 NKIAAPFK 188


>gi|226348061|gb|ACO50384.1| RecA [Rhizobium sullae]
          Length = 159

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 131/159 (82%), Positives = 149/159 (93%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHA
Sbjct: 1   TISTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+
Sbjct: 61  LDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           MG+SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RM
Sbjct: 121 MGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRM 159


>gi|291246119|gb|ADD85184.1| RecA [Borrelia recurrentis]
          Length = 193

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 126/190 (66%), Positives = 164/190 (86%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SG + LD A+GIGG+P+GR+VEI+GPESSGKTTL L  IA+ QKTGG  AF+DAEHALD 
Sbjct: 1   SGFILLDEAIGIGGYPRGRVVEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YAR LGV++  L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAAL P+AEI+G+MG+
Sbjct: 61  VYARALGVNINELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALMPQAEIDGEMGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           +  G+QARLMS+ALRK+T+ +S+S   ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+
Sbjct: 121 TQIGLQARLMSKALRKITAILSKSNACIMFINQIRMKIGLVFGSPETTTGGNALKFYSSL 180

Query: 230 RLDIRRVGSI 239
           RL++R+V  +
Sbjct: 181 RLEVRKVEQV 190


>gi|56181895|gb|AAV83928.1| RecA [Burkholderia cepacia]
          Length = 172

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 129/171 (75%), Positives = 151/171 (88%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
             E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF
Sbjct: 1   AAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAF 60

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           +DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+
Sbjct: 61  IDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPK 120

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMF
Sbjct: 121 AEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMF 171


>gi|18076865|emb|CAC87599.1| recA protein [Pseudomonas putida]
          Length = 199

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 142/199 (71%), Positives = 174/199 (87%)

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IAQ+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AV
Sbjct: 1   VIAQAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAV 60

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+I++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMK
Sbjct: 61  DVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A+PF+Q 
Sbjct: 121 IGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAAPFRQT 180

Query: 267 EFDIMYGEGISFFGELIDL 285
           EF I+YG+GI   GE+IDL
Sbjct: 181 EFQILYGKGIYLNGEMIDL 199


>gi|163960855|gb|ABY49972.1| recombination protein A [Rhizobium leguminosarum]
 gi|163960863|gb|ABY49976.1| recombination protein A [Rhizobium leguminosarum]
          Length = 160

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 127/157 (80%), Positives = 147/157 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDA
Sbjct: 3   EIETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEI
Sbjct: 63  EHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           EG+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FI
Sbjct: 123 EGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFI 159


>gi|51235273|gb|AAT98481.1| recombination protein A [Mesorhizobium amorphae]
          Length = 160

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 129/161 (80%), Positives = 148/161 (91%), Gaps = 1/161 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG+   + E IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++Q
Sbjct: 1   MRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRS 160


>gi|114150690|gb|ABI51991.1| recombinase A [Pseudomonas fluorescens]
 gi|114150692|gb|ABI51992.1| recombinase A [Pseudomonas fluorescens]
          Length = 194

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 139/194 (71%), Positives = 169/194 (87%)

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IV+D
Sbjct: 1   KMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVD 60

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFG
Sbjct: 61  SVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFG 120

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           SPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+Y
Sbjct: 121 SPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQILY 180

Query: 273 GEGISFFGELIDLG 286
           G+GI   GE+IDLG
Sbjct: 181 GKGIYLNGEMIDLG 194


>gi|322510295|gb|ADX05533.1| recombination protein A [Bradyrhizobium japonicum]
          Length = 163

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 125/162 (77%), Positives = 150/162 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 1   VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 61  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 162


>gi|289190618|gb|ADC93414.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-9]
          Length = 169

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 127/170 (74%), Positives = 150/170 (88%), Gaps = 1/170 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG        IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK
Sbjct: 1   KLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQK 59

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDS
Sbjct: 60  KGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDS 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           VAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 120 VAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169


>gi|325512765|gb|ADZ23571.1| RecA [Rhizobium sp. CCBAU 45499]
          Length = 159

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 132/159 (83%), Positives = 150/159 (94%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD
Sbjct: 1   STGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG
Sbjct: 61  PVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKI
Sbjct: 121 DSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKI 159


>gi|158631820|gb|ABW75015.1| RecA [Sinorhizobium sp. CCBAU 83279]
          Length = 166

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 138/164 (84%), Positives = 154/164 (93%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDAEHA
Sbjct: 3   TVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHA 62

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+
Sbjct: 63  LDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVIDSVAALVPRAEIEGE 122

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 123 MGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 166


>gi|291246096|gb|ADD85176.1| RecA [Borrelia recurrentis]
          Length = 203

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 132/203 (65%), Positives = 173/203 (85%), Gaps = 2/203 (0%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           +GIGG+P+GR+VEI+GPESSGKTTL L  IA+ QKTGG  AF+DAEHALD +YAR LGV+
Sbjct: 1   IGIGGYPRGRVVEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVN 60

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +  L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAAL P+AEI+G+MG++  G+QARL
Sbjct: 61  INELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGLQARL 120

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MS+ALRK+T+ +S+S   ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V  
Sbjct: 121 MSKALRKITAILSKSNACIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKVEQ 180

Query: 239 I--KDKDSITGNQTRVKVVKNKM 259
           +     D++ GN+ RVKVVKNK+
Sbjct: 181 VIGSSSDNVIGNKIRVKVVKNKV 203


>gi|157326923|gb|ABV44574.1| RecA [Burkholderia cenocepacia]
          Length = 158

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 116/159 (72%), Positives = 138/159 (86%), Gaps = 1/159 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQ
Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQ 158


>gi|325651027|emb|CBY89335.1| RecA protein [Bradyrhizobium japonicum]
          Length = 166

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 123/167 (73%), Positives = 147/167 (88%), Gaps = 1/167 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+
Sbjct: 1   KGSVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTV 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD+
Sbjct: 60  AEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           +V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  
Sbjct: 120 LVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNT 166


>gi|289190670|gb|ADC93440.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-17]
          Length = 169

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 125/170 (73%), Positives = 149/170 (87%), Gaps = 1/170 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG        +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+ QK
Sbjct: 1   KLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAEGQK 59

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDS
Sbjct: 60  KGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVRSGAVDVLVIDS 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           VAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 120 VAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSTTMVIFINQI 169


>gi|112791532|gb|ABI22036.1| recombinase A [Dickeya paradisiaca]
          Length = 190

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 135/190 (71%), Positives = 165/190 (86%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FI
Sbjct: 61  ARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIKD + + G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKDGEEVIGSETRVKVVKNKVA 180

Query: 261 SPFKQVEFDI 270
           +PFKQ EF I
Sbjct: 181 APFKQAEFQI 190


>gi|298566916|gb|ADI86534.1| recombination protein A [Bradyrhizobium japonicum]
          Length = 162

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 125/162 (77%), Positives = 150/162 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 1   VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 61  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 162


>gi|289190612|gb|ADC93411.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-7]
          Length = 169

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 127/170 (74%), Positives = 151/170 (88%), Gaps = 1/170 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG +      IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK
Sbjct: 1   KLG-KSDRSMDIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQK 59

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDS
Sbjct: 60  KGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDS 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           VAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 120 VAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169


>gi|256809968|gb|ACV31083.1| recombinase A [Listonella anguillarum]
          Length = 176

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 130/176 (73%), Positives = 155/176 (88%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
           LDIALG GG P GRIVE+YGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+K
Sbjct: 1   LDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQRVGKTCAFIDAEHALDPIYAKK 60

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           LGV++  LL+SQPDTGEQALEI D L RSGA+D+IVIDSVAALTP+AEIEG+MG+S  G+
Sbjct: 61  LGVNIDELLVSQPDTGEQALEICDALARSGAIDVIVIDSVAALTPKAEIEGEMGDSHMGL 120

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
           QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR
Sbjct: 121 QARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVR 176


>gi|298566902|gb|ADI86527.1| recombination protein A [Sinorhizobium sp. CCBAU 05617]
          Length = 163

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 136/163 (83%), Positives = 154/163 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL
Sbjct: 1   VSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M
Sbjct: 61  DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 163


>gi|311337025|gb|ADP89903.1| recombination protein RecA [Bradyrhizobium jicamae]
          Length = 160

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 119/160 (74%), Positives = 146/160 (91%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VS+GSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALH +A+ Q+ GG CAF+DAEH
Sbjct: 1   ETVSTGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHCVAEGQRKGGICAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGA+D++V+DSVAAL P+AE+EG
Sbjct: 61  ALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALVPKAELEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RM
Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRM 160


>gi|298566898|gb|ADI86525.1| recombination protein A [Sinorhizobium sp. CCBAU 05600]
          Length = 160

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 133/160 (83%), Positives = 151/160 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL
Sbjct: 1   VSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M
Sbjct: 61  DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKI
Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKI 160


>gi|169792007|gb|ACA80307.1| recombination protein A [Sinorhizobium meliloti]
          Length = 169

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 135/168 (80%), Positives = 154/168 (91%), Gaps = 1/168 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           K ++M+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TI
Sbjct: 3   KRSVMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 61

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI
Sbjct: 62  AEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDI 121

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           +VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C+
Sbjct: 122 LVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNCM 169


>gi|158905833|gb|ABW82566.1| RecA [Bradyrhizobiaceae bacterium S9]
 gi|158905835|gb|ABW82567.1| RecA [Bradyrhizobiaceae bacterium S7]
 gi|289812938|gb|ADD20929.1| recombinase A [Bradyrhizobium yuanmingense]
 gi|289812953|gb|ADD20936.1| recombinase A [Bradyrhizobium japonicum]
 gi|296516852|emb|CBM35913.1| recombination protein A [Bradyrhizobium sp. CAH10]
          Length = 162

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 127/162 (78%), Positives = 150/162 (92%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEH
Sbjct: 1   EAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG
Sbjct: 61  ALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 162


>gi|158632178|gb|ABW75485.1| RecA [Rhizobium multihospitium]
          Length = 162

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 133/162 (82%), Positives = 152/162 (93%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+GSL LDIALGIGG PKGRI+EIYG ESSGKTTLAL TIA++QK GG CAFVDAEHA
Sbjct: 1   TVSTGSLSLDIALGIGGLPKGRIIEIYGTESSGKTTLALQTIAEAQKKGGICAFVDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+
Sbjct: 61  LDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIG
Sbjct: 121 MGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 162


>gi|289812940|gb|ADD20930.1| recombinase A [Bradyrhizobium yuanmingense]
 gi|325512833|gb|ADZ23605.1| RecA [Bradyrhizobium sp. CCBAU 03335]
          Length = 165

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 130/165 (78%), Positives = 153/165 (92%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEH
Sbjct: 1   EAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG
Sbjct: 61  ALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIGVM
Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVM 165


>gi|193090213|gb|ACF15278.1| recombination protein A [Sinorhizobium sp. CCBAU 65682]
          Length = 166

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 131/167 (78%), Positives = 153/167 (91%), Gaps = 1/167 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LG + SI E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A+
Sbjct: 1   SVMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V
Sbjct: 60  AQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           +DSVAAL PRAEIEG+MG++LPGMQARLMSQALRKLT+SIS+S C++
Sbjct: 120 VDSVAALVPRAEIEGEMGDNLPGMQARLMSQALRKLTASISKSNCMV 166


>gi|24251198|gb|AAN46111.1| RecA [Bacillus megaterium]
          Length = 162

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 106/162 (65%), Positives = 134/162 (82%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGAVDIIV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I++SK I +FI
Sbjct: 1   VRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAINKSKTIAIFI 60

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR   +K  + I GN+TR+KVVKNK+A
Sbjct: 61  NQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIVGNKTRIKVVKNKVA 120

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
            PF+  E DIMYGEGIS  GE++D+  +  IV KSG+W+S+ 
Sbjct: 121 PPFRAAEVDIMYGEGISKEGEILDIASELDIVQKSGSWYSYN 162


>gi|32345042|gb|AAM93531.1| RecA protein [Rickettsia honei]
          Length = 176

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 134/176 (76%), Positives = 157/176 (89%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALGIGG PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  Y
Sbjct: 1   SLGLDIALGIGGVPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+KLGV++  L+ISQPDTGEQALEI D L+RS  +D+I+IDSVAAL P++EIEG+MG++ 
Sbjct: 61  AKKLGVNIDELIISQPDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMGDAQ 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
              QARLMSQALRKLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+
Sbjct: 121 MASQARLMSQALRKLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYA 176


>gi|312284970|gb|ADQ64237.1| recombinase A [Bradyrhizobium sp. ISLU101]
 gi|312284972|gb|ADQ64238.1| recombinase A [Bradyrhizobium sp. ISLU12]
 gi|312284976|gb|ADQ64240.1| recombinase A [Bradyrhizobium sp. ISLU8]
          Length = 165

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 125/166 (75%), Positives = 147/166 (88%), Gaps = 1/166 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG++M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT
Sbjct: 1   GKGSVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHT 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           +A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD
Sbjct: 60  VAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVD 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           ++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 120 VLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 165


>gi|299152207|gb|ADJ18193.1| recombinase A [Bradyrhizobium pachyrhizi]
          Length = 162

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 126/162 (77%), Positives = 149/162 (91%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +SSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEH
Sbjct: 1   ETISSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG
Sbjct: 61  ALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVRSGAVDVLVIDSVAALVPKAELEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 162


>gi|317453430|emb|CBX31933.1| RecA protein [Sinorhizobium meliloti]
          Length = 165

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 135/166 (81%), Positives = 153/166 (92%), Gaps = 1/166 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA+
Sbjct: 1   SIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+V
Sbjct: 60  AQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           IDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C+
Sbjct: 120 IDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNCM 165


>gi|325650934|emb|CBY89650.1| RecA protein [Rhodopseudomonas sp. R-45974=B454]
 gi|325650936|emb|CBY89651.1| RecA protein [Rhodopseudomonas sp. R-45977=B462]
          Length = 165

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 120/166 (72%), Positives = 144/166 (86%), Gaps = 1/166 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G++M+LG        IEV+SSGSLGLDIALG+GG PKGR++EIYGPESSGKTTLALH  A
Sbjct: 1   GSVMKLGKNDRSM-DIEVISSGSLGLDIALGVGGLPKGRVIEIYGPESSGKTTLALHCAA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           ++QK GG CAF+DAEHALD +YARKLGV++  LLISQPD GEQALEI D LVRSGAVD++
Sbjct: 60  EAQKKGGICAFIDAEHALDPVYARKLGVNVDELLISQPDHGEQALEIADTLVRSGAVDVL 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           +IDSVAAL PRAE+EG+MG++LPG+QARLMSQALRKLT+SI++S  
Sbjct: 120 IIDSVAALVPRAELEGEMGDALPGLQARLMSQALRKLTASINKSNT 165


>gi|298566908|gb|ADI86530.1| recombination protein A [Sinorhizobium fredii]
          Length = 162

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 137/162 (84%), Positives = 153/162 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL
Sbjct: 1   VSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M
Sbjct: 61  DPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGV
Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGV 162


>gi|311337027|gb|ADP89904.1| recombination protein RecA [Bradyrhizobium pachyrhizi]
          Length = 162

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 124/162 (76%), Positives = 148/162 (91%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +SSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+ QK GG CAF+DA
Sbjct: 1   DVETISSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+
Sbjct: 61  EHALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVRSGAVDVLVIDSVAALVPKAEL 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RM
Sbjct: 121 EGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRM 162


>gi|298566892|gb|ADI86522.1| recombination protein A [Sinorhizobium fredii]
          Length = 164

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 134/160 (83%), Positives = 150/160 (93%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHA
Sbjct: 4   TVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHA 63

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+
Sbjct: 64  LDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGE 123

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 124 MGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 163


>gi|158631824|gb|ABW75017.1| RecA [Sinorhizobium meliloti]
          Length = 167

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 136/162 (83%), Positives = 152/162 (93%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDAEHA
Sbjct: 3   TVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHA 62

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+
Sbjct: 63  LDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVIDSVAALVPRAEIEGE 122

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIG
Sbjct: 123 MGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 164


>gi|295984326|gb|ADG63631.1| RecA [Sinorhizobium sp. CCBAU 05606]
          Length = 163

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 137/163 (84%), Positives = 154/163 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL
Sbjct: 1   VSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M
Sbjct: 61  DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 163


>gi|183585340|gb|ACC63984.1| recombinase [Clostridium perfringens]
 gi|183585342|gb|ACC63985.1| recombinase [Clostridium perfringens]
          Length = 158

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 108/156 (69%), Positives = 135/156 (86%)

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT +I++S C+++FINQ+R K
Sbjct: 3   DVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGTINKSNCVVIFINQLREK 62

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           +G+MFG+PETT GG ALKFY+SVR+DIRR+ SIK  D ITGN+TRVK+VKNK+A PFKQ 
Sbjct: 63  VGIMFGNPETTPGGRALKFYASVRMDIRRIDSIKQGDGITGNRTRVKIVKNKVAPPFKQA 122

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           EFDIMY EGIS  G ++D+GVK +IV KSGAWFS+ 
Sbjct: 123 EFDIMYNEGISKEGNIVDVGVKENIVQKSGAWFSYG 158


>gi|298566906|gb|ADI86529.1| recombination protein A [Sinorhizobium fredii]
 gi|325512823|gb|ADZ23600.1| RecA [Sinorhizobium fredii]
          Length = 163

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 138/163 (84%), Positives = 154/163 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL
Sbjct: 1   VSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M
Sbjct: 61  DPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 163


>gi|51235265|gb|AAT98477.1| recombination protein A [Mesorhizobium plurifarium]
          Length = 160

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 127/161 (78%), Positives = 148/161 (91%), Gaps = 1/161 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++Q
Sbjct: 1   MRLGANEKVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SVAALTPRAEIEG+MG++LPG+QARLMSQALRKLT+SISRS
Sbjct: 120 SVAALTPRAEIEGEMGDALPGLQARLMSQALRKLTASISRS 160


>gi|112791564|gb|ABI22052.1| recombinase A [Hafnia alvei]
          Length = 196

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 136/196 (69%), Positives = 168/196 (85%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TT  L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L
Sbjct: 1   TTXTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FI
Sbjct: 61  TRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A
Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDVVVGSETRVKVVKNKIA 180

Query: 261 SPFKQVEFDIMYGEGI 276
           +PFKQ EF IMY +GI
Sbjct: 181 APFKQAEFQIMYAKGI 196


>gi|317453428|emb|CBX31932.1| RecA protein [Sinorhizobium meliloti]
 gi|317453434|emb|CBX31935.1| RecA protein [Sinorhizobium meliloti]
          Length = 164

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 135/165 (81%), Positives = 152/165 (92%), Gaps = 1/165 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA+
Sbjct: 1   SIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+V
Sbjct: 60  AQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           IDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C
Sbjct: 120 IDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNC 164


>gi|289812948|gb|ADD20934.1| recombinase A [Bradyrhizobium liaoningense]
          Length = 162

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 128/162 (79%), Positives = 150/162 (92%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEH
Sbjct: 1   EAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG
Sbjct: 61  ALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 162


>gi|51235271|gb|AAT98480.1| recombination protein A [Mesorhizobium plurifarium]
 gi|62548807|gb|AAX86855.1| RecA [Mesorhizobium plurifarium]
          Length = 160

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 127/161 (78%), Positives = 148/161 (91%), Gaps = 1/161 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++Q
Sbjct: 1   MRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SVAALTPRAEIEG+MG++LPG+QARLMSQALRKLT+SISRS
Sbjct: 120 SVAALTPRAEIEGEMGDALPGLQARLMSQALRKLTASISRS 160


>gi|296516856|emb|CBM35919.1| recombination protein A [Bradyrhizobium sp. CAH40]
          Length = 168

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 125/167 (74%), Positives = 149/167 (89%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           +      IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG 
Sbjct: 2   KNDRSMDIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGI 61

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL
Sbjct: 62  CAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAAL 121

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+R
Sbjct: 122 VPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIR 168


>gi|298566896|gb|ADI86524.1| recombination protein A [Sinorhizobium fredii]
          Length = 163

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 136/163 (83%), Positives = 154/163 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALGIGG PKGR++EIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL
Sbjct: 1   VSTGSLGLDIALGIGGLPKGRVIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M
Sbjct: 61  DPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 163


>gi|114150700|gb|ABI51996.1| recombinase A [Pseudomonas sp. PTB2093]
          Length = 190

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 137/190 (72%), Positives = 167/190 (87%)

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           CAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IV+DSVAAL
Sbjct: 1   CAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAAL 60

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
            P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFGSPETT
Sbjct: 61  VPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETT 120

Query: 218 TGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277
           TGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+YG+GI 
Sbjct: 121 TGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQILYGKGIY 180

Query: 278 FFGELIDLGV 287
             GE+IDLGV
Sbjct: 181 LNGEMIDLGV 190


>gi|325512797|gb|ADZ23587.1| RecA [Sinorhizobium fredii]
          Length = 161

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 136/161 (84%), Positives = 152/161 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL
Sbjct: 1   VSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M
Sbjct: 61  DPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIG
Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 161


>gi|226903666|gb|ACO90396.1| RecA [Sinorhizobium xinjiangense]
          Length = 149

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 121/150 (80%), Positives = 137/150 (91%), Gaps = 1/150 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTT
Sbjct: 1   IERSFGKGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVR
Sbjct: 60  LALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           SGA+D++V+DSVAAL PRAEIEG+MG+SLP
Sbjct: 120 SGAIDVLVVDSVAALVPRAEIEGEMGDSLP 149


>gi|213012490|gb|ACJ38811.1| recombination-repair protein [Vibrio sp. R-673]
          Length = 187

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 132/187 (70%), Positives = 165/187 (88%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASPF 263
           NK+A+PF
Sbjct: 181 NKIAAPF 187


>gi|25808111|gb|AAN74120.1| RecA [Helicobacter pylori]
          Length = 191

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 126/191 (65%), Positives = 159/191 (83%), Gaps = 1/191 (0%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NL
Sbjct: 1   GVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENL 60

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           L+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS A
Sbjct: 61  LVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHA 120

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           LRK+T  + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K 
Sbjct: 121 LRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQ 180

Query: 242 KDSITGNQTRV 252
            +   GN+ + 
Sbjct: 181 NEQHIGNRAKA 191


>gi|198417853|gb|ACH87969.1| RecA protein [Pseudomonas chlororaphis]
 gi|198417900|gb|ACH87972.1| RecA protein [Pseudomonas chlororaphis]
          Length = 191

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 137/191 (71%), Positives = 167/191 (87%)

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IVIDSV
Sbjct: 1   GATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVIDSV 60

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFGSP
Sbjct: 61  AALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSP 120

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           ETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVK+VKNK+A PF+Q EF I+YG+
Sbjct: 121 ETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKIVKNKVAPPFRQAEFQILYGK 180

Query: 275 GISFFGELIDL 285
           GI   GE+IDL
Sbjct: 181 GIYLNGEIIDL 191


>gi|213950706|gb|ACJ54598.1| recombination protein A [Sinorhizobium fredii]
          Length = 162

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 134/161 (83%), Positives = 149/161 (92%), Gaps = 1/161 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TI
Sbjct: 1   KGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 60  AEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           +V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S
Sbjct: 120 LVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 160


>gi|290889063|gb|ADD69881.1| recombination protein A [Rhizobium leguminosarum]
 gi|290889065|gb|ADD69882.1| recombination protein A [Rhizobium leguminosarum]
 gi|290889083|gb|ADD69891.1| recombination protein A [Rhizobium leguminosarum]
          Length = 157

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 129/157 (82%), Positives = 149/157 (94%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD
Sbjct: 1   STGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG
Sbjct: 61  PVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RM
Sbjct: 121 DSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRM 157


>gi|312284990|gb|ADQ64247.1| recombinase A [Bradyrhizobium sp. LmjD32]
 gi|312284996|gb|ADQ64250.1| recombinase A [Bradyrhizobium sp. LmjD2b]
          Length = 165

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 121/165 (73%), Positives = 146/165 (88%), Gaps = 1/165 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG        +E +SSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+
Sbjct: 2   KGSVMKLGKNDRSM-DVETISSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTV 60

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD+
Sbjct: 61  AEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDV 120

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           +V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 121 LVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 165


>gi|289812950|gb|ADD20935.1| recombinase A [Bradyrhizobium liaoningense]
          Length = 165

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 131/165 (79%), Positives = 153/165 (92%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEH
Sbjct: 1   EAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG
Sbjct: 61  ALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIGVM
Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVM 165


>gi|226903664|gb|ACO90395.1| RecA [Agrobacterium tumefaciens]
          Length = 149

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 119/150 (79%), Positives = 137/150 (91%), Gaps = 1/150 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+ V+GKG+IM+LGS  ++ E +E VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTT
Sbjct: 1   IEPVFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LAL TIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDTGEQALEITD LVR
Sbjct: 60  LALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDTGEQALEITDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           SGAVD++V+DSVAALTPRAEIEG+MG+SLP
Sbjct: 120 SGAVDVLVVDSVAALTPRAEIEGEMGDSLP 149


>gi|289812925|gb|ADD20923.1| recombinase A [Bradyrhizobium sp. CCBAU 33067]
          Length = 162

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 126/161 (78%), Positives = 149/161 (92%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEH
Sbjct: 1   EAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG
Sbjct: 61  ALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           +MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 161


>gi|163960892|gb|ABY49990.1| recombination protein A [Mesorhizobium loti]
          Length = 160

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 125/157 (79%), Positives = 146/157 (92%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE V +GSLGLDIALG+GG P+GRIV+IYGPESSGKTTLALHT+A++QK GG CAFVDA
Sbjct: 3   EIETVPTGSLGLDIALGVGGLPRGRIVKIYGPESSGKTTLALHTVAEAQKKGGICAFVDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           +HALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEI
Sbjct: 63  KHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           EG+MG+SLPG+QARLMSQALRKLT+SISRS  +++FI
Sbjct: 123 EGEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFI 159


>gi|326328144|gb|ADZ54139.1| recombination protein A [Bradyrhizobium sp. CCBAU 15772]
          Length = 164

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 129/164 (78%), Positives = 152/164 (92%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHA
Sbjct: 1   AVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+
Sbjct: 61  LDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIGVM
Sbjct: 121 MGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVM 164


>gi|325512819|gb|ADZ23598.1| RecA [Sinorhizobium sp. CCBAU 051121]
          Length = 158

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 131/158 (82%), Positives = 150/158 (94%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A++QK GG CAFVDAEHALD
Sbjct: 1   STGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAEAQKKGGICAFVDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG
Sbjct: 61  PVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           +SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 121 DSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 158


>gi|312284980|gb|ADQ64242.1| recombinase A [Bradyrhizobium elkanii]
          Length = 165

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 122/165 (73%), Positives = 146/165 (88%), Gaps = 1/165 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG        +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+
Sbjct: 2   KGSVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTV 60

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD+
Sbjct: 61  AEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDV 120

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           +V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 121 LVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 165


>gi|289812917|gb|ADD20919.1| recombinase A [Bradyrhizobium sp. CCBAU 23155]
 gi|289812927|gb|ADD20924.1| recombinase A [Bradyrhizobium canariense]
 gi|325512785|gb|ADZ23581.1| RecA [Bradyrhizobium yuanmingense]
          Length = 161

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 126/161 (78%), Positives = 149/161 (92%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEH
Sbjct: 1   EAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG
Sbjct: 61  ALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           +MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 161


>gi|163960849|gb|ABY49969.1| recombination protein A [Rhizobium gallicum]
 gi|163960851|gb|ABY49970.1| recombination protein A [Rhizobium gallicum]
 gi|163960853|gb|ABY49971.1| recombination protein A [Rhizobium gallicum]
 gi|163960865|gb|ABY49977.1| recombination protein A [Rhizobium mongolense]
          Length = 160

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 128/157 (81%), Positives = 146/157 (92%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDA
Sbjct: 3   EIETISTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEI
Sbjct: 63  EHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           EG+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FI
Sbjct: 123 EGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFI 159


>gi|163960871|gb|ABY49980.1| recombination protein A [Rhizobium mongolense]
          Length = 160

 Score =  173 bits (438), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 129/158 (81%), Positives = 147/158 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE VS+GSL LDIALGIGG PKGR++EIYGPESSGKTTLAL TIA++QK GG CAFVDA
Sbjct: 3   EIETVSTGSLSLDIALGIGGLPKGRVIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAAL PRAEI
Sbjct: 63  EHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALVPRAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           EG+MG+SLPG+QARLMSQALRKLT+SIS+S C+++FIN
Sbjct: 123 EGEMGDSLPGLQARLMSQALRKLTASISKSNCMVIFIN 160


>gi|262223183|gb|ACY38164.1| recombination protein RecA [Bradyrhizobium japonicum]
 gi|262223185|gb|ACY38165.1| recombination protein RecA [Bradyrhizobium sp. CTAW69]
 gi|262223189|gb|ACY38167.1| recombination protein RecA [Bradyrhizobium japonicum]
 gi|262223195|gb|ACY38170.1| recombination protein RecA [Bradyrhizobium japonicum]
          Length = 161

 Score =  173 bits (438), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 122/160 (76%), Positives = 147/160 (91%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DA
Sbjct: 2   DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+
Sbjct: 62  EHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAEL 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 122 EGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 161


>gi|224086956|ref|XP_002308017.1| predicted protein [Populus trichocarpa]
 gi|222853993|gb|EEE91540.1| predicted protein [Populus trichocarpa]
          Length = 335

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 108/330 (32%), Positives = 163/330 (49%), Gaps = 52/330 (15%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E     K  AL  AL+Q+   +G+ +++ L    S      ++S+GSL LD+ALGIGG P
Sbjct: 53  EGEAKQKDNALRLALTQLAGEFGRESMLSLQRFFSSRRA-SIISTGSLKLDLALGIGGLP 111

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KGR+VEIYG E+SGKTT+ALH I ++QK GG CAF+D E+A+D   A+ +GV+ +NLLIS
Sbjct: 112 KGRMVEIYGQEASGKTTIALHIIKEAQKLGGYCAFLDVENAMDHSLAKSMGVNTENLLIS 171

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           +PD  E  L + +                                               
Sbjct: 172 RPDCAENLLSVVNT---------------------------------------------- 185

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
               +++S  + V +            + E T GGNALKFYS+VRL + R G +K  D +
Sbjct: 186 ----LTKSGSVDVIVVDSVRTSLKSGRAEEVTCGGNALKFYSAVRLRMIRTGLLKTGDKV 241

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305
           TG     +VVKNK+A    + E  I +G G  F  E+++L  + S++ K G+ +    + 
Sbjct: 242 TGLGVCAQVVKNKLAPAMTKAEIGIQFGRGFCFESEVLELACEQSLIKKEGSSYVIGREV 301

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNA 335
                  ++ +L EN  + + I + LR   
Sbjct: 302 FSN-EHAAEQYLIENEGVLDQIVAKLRGKL 330


>gi|324455904|gb|ADY39244.1| recombinase A [Vibrio variabilis]
          Length = 185

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 132/184 (71%), Positives = 163/184 (88%)

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+
Sbjct: 2   QKQGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVV 61

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMF
Sbjct: 62  DSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMF 121

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E  I+
Sbjct: 122 GNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQIL 181

Query: 272 YGEG 275
           YG+G
Sbjct: 182 YGQG 185


>gi|298566900|gb|ADI86526.1| recombination protein A [Sinorhizobium fredii]
          Length = 160

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 134/159 (84%), Positives = 150/159 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL
Sbjct: 1   VSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M
Sbjct: 61  DPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 159


>gi|289812942|gb|ADD20931.1| recombinase A [Bradyrhizobium sp. CCBAU 65884]
          Length = 162

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 127/161 (78%), Positives = 149/161 (92%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEH
Sbjct: 1   EAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG
Sbjct: 61  ALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           +MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 161


>gi|213012368|gb|ACJ38750.1| recombination-repair protein [Vibrio sp. R-78]
          Length = 184

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 132/184 (71%), Positives = 163/184 (88%)

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+
Sbjct: 1   QKQGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVV 60

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMF
Sbjct: 61  DSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMF 120

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E  I+
Sbjct: 121 GNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQIL 180

Query: 272 YGEG 275
           YG+G
Sbjct: 181 YGQG 184


>gi|89143239|emb|CAJ57514.1| recombinase A [Microbacterium dextranolyticum]
          Length = 185

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 130/185 (70%), Positives = 154/185 (83%)

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTL LH IA  Q+ GG  AF+DAEHALD  YA+KLGVD+  LL+SQPDTGEQALEI D
Sbjct: 1   GKTTLTLHAIANVQRAGGIAAFIDAEHALDPDYAQKLGVDIDQLLVSQPDTGEQALEIAD 60

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           MLVRSGA+D++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  ++++   ++
Sbjct: 61  MLVRSGAIDLVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTGTTMI 120

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD     GN+TRVKVVKNK
Sbjct: 121 FINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNK 180

Query: 259 MASPF 263
           MA PF
Sbjct: 181 MAPPF 185


>gi|154432321|gb|ABS82041.1| RecA [Rhizobium mesosinicum]
          Length = 171

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 129/164 (78%), Positives = 147/164 (89%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
           S       IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG
Sbjct: 4   SARRDIVEIETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGG 63

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
            CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAA
Sbjct: 64  ICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAA 123

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           LTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FI
Sbjct: 124 LTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFI 167


>gi|312284992|gb|ADQ64248.1| recombinase A [Bradyrhizobium sp. ISLU9]
          Length = 165

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 125/165 (75%), Positives = 148/165 (89%), Gaps = 1/165 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG +      IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+
Sbjct: 2   KGSVMKLG-KSDRSMDIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTV 60

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD+
Sbjct: 61  AEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDV 120

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           +V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 121 LVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 165


>gi|315360829|gb|ADU05388.1| recombination protein A [Sinorhizobium sp. CCBAU 05699]
          Length = 159

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 133/159 (83%), Positives = 150/159 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL
Sbjct: 1   VSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M
Sbjct: 61  DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 159


>gi|106647409|gb|ABF82343.1| recombinase A [Cupriavidus sp. MApud8.1]
 gi|106647411|gb|ABF82344.1| recombinase A [Cupriavidus sp. Tpud27.6]
 gi|106647413|gb|ABF82345.1| recombinase A [Cupriavidus sp. Tpig.6a]
 gi|106647415|gb|ABF82346.1| recombinase A [Cupriavidus sp. MApud10.1]
 gi|106647433|gb|ABF82355.1| recombinase A [Cupriavidus taiwanensis]
 gi|325974140|emb|CBM42968.1| recombinase A [Cupriavidus taiwanensis]
 gi|325974142|emb|CBM42969.1| recombinase A [Cupriavidus taiwanensis]
 gi|325974144|emb|CBM42970.1| recombinase A [Cupriavidus taiwanensis]
 gi|325974146|emb|CBM42971.1| recombinase A [Cupriavidus taiwanensis]
 gi|325974148|emb|CBM42972.1| recombinase A [Cupriavidus taiwanensis]
          Length = 176

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 137/176 (77%), Positives = 161/176 (91%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           LGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGTCAF+DAEHALD  YA
Sbjct: 1   LGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVNYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            KLGV++ +LLISQPDTGEQALEITD LVRSG++D+I+IDSVAAL P+AEIEG+MG+SLP
Sbjct: 61  SKLGVNVGDLLISQPDTGEQALEITDALVRSGSIDLIIIDSVAALVPKAEIEGEMGDSLP 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           G+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+S
Sbjct: 121 GLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYAS 176


>gi|62548805|gb|AAX86854.1| RecA [Rhizobium leguminosarum bv. viciae]
          Length = 160

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 130/161 (80%), Positives = 150/161 (93%), Gaps = 1/161 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 160


>gi|51235263|gb|AAT98476.1| recombination protein A [Mesorhizobium plurifarium]
 gi|51235267|gb|AAT98478.1| recombination protein A [Mesorhizobium plurifarium]
 gi|51235269|gb|AAT98479.1| recombination protein A [Mesorhizobium plurifarium]
 gi|62548809|gb|AAX86856.1| RecA [Mesorhizobium plurifarium]
          Length = 160

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 128/161 (79%), Positives = 147/161 (91%), Gaps = 1/161 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG+     E IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++Q
Sbjct: 1   MRLGANEQAVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SVAALTPRAEIEG+MG++LPG+QARLMSQALRKLT+SISRS
Sbjct: 120 SVAALTPRAEIEGEMGDALPGLQARLMSQALRKLTASISRS 160


>gi|33087809|gb|AAP93035.1| recombination protein A [Yersinia enterocolitica]
          Length = 158

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 111/160 (69%), Positives = 133/160 (83%), Gaps = 2/160 (1%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L
Sbjct: 1   QFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTL 58

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGA
Sbjct: 59  QVIAAAQRAGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGA 118

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           VD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RK
Sbjct: 119 VDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRK 158


>gi|213012376|gb|ACJ38754.1| recombination-repair protein [Vibrio sp. R-91]
 gi|324455906|gb|ADY39245.1| recombinase A [Vibrio sp. R-40493]
          Length = 185

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 131/184 (71%), Positives = 163/184 (88%)

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+
Sbjct: 2   QKAGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVV 61

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMF
Sbjct: 62  DSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMF 121

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E  I+
Sbjct: 122 GNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQIL 181

Query: 272 YGEG 275
           YG+G
Sbjct: 182 YGQG 185


>gi|325512825|gb|ADZ23601.1| RecA [Sinorhizobium fredii]
          Length = 159

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 134/159 (84%), Positives = 150/159 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL
Sbjct: 1   VSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M
Sbjct: 61  DPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 159


>gi|262223179|gb|ACY38162.1| recombination protein RecA [Bradyrhizobium sp. CTAW38]
          Length = 161

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 124/160 (77%), Positives = 145/160 (90%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DA
Sbjct: 2   DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+
Sbjct: 62  EHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAEL 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           EG MG++LPG+QARLMSQALRKLT+SI+RS  +++FINQ+
Sbjct: 122 EGKMGDALPGLQARLMSQALRKLTASINRSNTMVIFINQI 161


>gi|169883836|gb|ACA98014.1| recombination protein A [Bradyrhizobium japonicum]
          Length = 167

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 130/164 (79%), Positives = 152/164 (92%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHA
Sbjct: 4   AVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHA 63

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+
Sbjct: 64  LDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGE 123

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIGVM
Sbjct: 124 MGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVM 167


>gi|158632176|gb|ABW75484.1| RecA [Rhizobium multihospitium]
          Length = 162

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 132/162 (81%), Positives = 151/162 (93%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+GSL LDIALGIGG PKGRI+EIY  ESSGKTTLAL TIA++QK GG CAFVDAEHA
Sbjct: 1   TVSTGSLSLDIALGIGGLPKGRIIEIYRTESSGKTTLALQTIAEAQKKGGICAFVDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+
Sbjct: 61  LDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIG
Sbjct: 121 MGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 162


>gi|106647421|gb|ABF82349.1| recombinase A [Cupriavidus sp. amp45]
 gi|106647423|gb|ABF82350.1| recombinase A [Cupriavidus sp. cmp29]
 gi|106647425|gb|ABF82351.1| recombinase A [Cupriavidus sp. amp6]
 gi|106647431|gb|ABF82354.1| recombinase A [Cupriavidus sp. amp18]
          Length = 176

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 138/176 (78%), Positives = 161/176 (91%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           LGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGTCAF+DAEHALD  YA
Sbjct: 1   LGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVSYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            KLGV++ +LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLP
Sbjct: 61  GKLGVNVGDLLISQPDTGEQALEITDALVRSGSIDLIVIDSVAALVPKAEIEGEMGDSLP 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           G+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+S
Sbjct: 121 GLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYAS 176


>gi|325512805|gb|ADZ23591.1| RecA [Bradyrhizobium yuanmingense]
 gi|326328140|gb|ADZ54137.1| recombination protein A [Bradyrhizobium sp. CCBAU 15779]
          Length = 160

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 126/160 (78%), Positives = 149/160 (93%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHAL
Sbjct: 1   VSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+M
Sbjct: 61  DPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           G++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 GDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 160


>gi|213012334|gb|ACJ38733.1| recombination-repair protein [Vibrio chagasii]
          Length = 197

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 133/197 (67%), Positives = 164/197 (83%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G   + + A HALD    +KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQKVGKPASLIAARHALDPFTLKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVK 180

Query: 257 NKMASPFKQVEFDIMYG 273
           NK+A+PFKQ E  I+YG
Sbjct: 181 NKIAAPFKQAETQILYG 197


>gi|169883834|gb|ACA98013.1| recombination protein A [Bradyrhizobium japonicum]
          Length = 167

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 128/164 (78%), Positives = 152/164 (92%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHA
Sbjct: 4   AVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHA 63

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+
Sbjct: 64  LDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGE 123

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIGVM
Sbjct: 124 MGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVM 167


>gi|312284966|gb|ADQ64235.1| recombinase A [Bradyrhizobium sp. LmjC]
          Length = 165

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 121/165 (73%), Positives = 146/165 (88%), Gaps = 1/165 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG        +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+
Sbjct: 2   KGSVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTV 60

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGA+D+
Sbjct: 61  AEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAIDV 120

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           +V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 121 LVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 165


>gi|158631766|gb|ABW74988.1| RecA [Bradyrhizobium elkanii]
          Length = 161

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 125/161 (77%), Positives = 149/161 (92%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHAL
Sbjct: 1   VSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+M
Sbjct: 61  DPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIG
Sbjct: 121 GDALPGLQARLMSQALRKLTASINKSHTMVIFINQIRMKIG 161


>gi|169883838|gb|ACA98015.1| recombination protein A [Bradyrhizobium elkanii]
          Length = 167

 Score =  173 bits (437), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 126/164 (76%), Positives = 152/164 (92%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHA
Sbjct: 4   AVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHA 63

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGV++  LLISQPDTGEQALEI D LVRSGA+D++V+DSVAAL P+AE+EG+
Sbjct: 64  LDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALVPKAELEGE 123

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIGVM
Sbjct: 124 MGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVM 167


>gi|325512775|gb|ADZ23576.1| RecA [Bradyrhizobium japonicum]
          Length = 161

 Score =  173 bits (437), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 125/161 (77%), Positives = 149/161 (92%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEH
Sbjct: 1   EAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG
Sbjct: 61  ALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           +MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 161


>gi|158147279|gb|ABW22693.1| recA [Sinorhizobium sp. CCBAU 83643]
          Length = 158

 Score =  173 bits (437), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 132/158 (83%), Positives = 148/158 (93%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHA
Sbjct: 1   TVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+
Sbjct: 61  LDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+R
Sbjct: 121 MGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIR 158


>gi|33087857|gb|AAP93059.1| recombination protein A [Yersinia mollaretii]
          Length = 173

 Score =  173 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 118/175 (67%), Positives = 143/175 (81%), Gaps = 2/175 (1%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ 
Sbjct: 1   LGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRA 58

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSV
Sbjct: 59  GKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSV 118

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           AALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ+RMKIGV
Sbjct: 119 AALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQIRMKIGV 173


>gi|307827258|gb|ADN94654.1| RecA [Aggregatibacter actinomycetemcomitans]
          Length = 163

 Score =  173 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 122/165 (73%), Positives = 140/165 (84%), Gaps = 2/165 (1%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKGAIM+LG    +   IE +S+GS GLD+ALGIGG P GRIVEI+GPESSGKTTL L
Sbjct: 1   QFGKGAIMKLGDSQKL--DIEAISTGSFGLDLALGIGGLPMGRIVEIFGPESSGKTTLTL 58

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA++QKTG TCAF+DAEHALD IYA KLGVD+K LL+SQPD GEQALEI D LVRSGA
Sbjct: 59  SVIAEAQKTGKTCAFIDAEHALDPIYASKLGVDVKELLVSQPDNGEQALEICDALVRSGA 118

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           VD+I++DSVAALTP+AEIEGDMG+S  G+QARLMSQALRKLTS I
Sbjct: 119 VDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTSQI 163


>gi|160375127|gb|ABX38945.1| recombinase protein A [Mesorhizobium huakuii]
          Length = 144

 Score =  173 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 111/145 (76%), Positives = 131/145 (90%), Gaps = 1/145 (0%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLA
Sbjct: 1   RAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLA 59

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSG
Sbjct: 60  LHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSG 119

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGE 169
           A+D++V+DSVAALTPRAEIEG+MG+
Sbjct: 120 AIDVLVVDSVAALTPRAEIEGEMGD 144


>gi|106647429|gb|ABF82353.1| recombinase A [Cupriavidus sp. cmp52]
          Length = 176

 Score =  173 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 138/176 (78%), Positives = 161/176 (91%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           LGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGTCAF+DAEHALD  YA
Sbjct: 1   LGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVNYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            KLGV++ +LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLP
Sbjct: 61  GKLGVNVGDLLISQPDTGEQALEITDALVRSGSIDLIVIDSVAALVPKAEIEGEMGDSLP 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           G+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+S
Sbjct: 121 GLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYAS 176


>gi|57116484|gb|AAW33733.1| recombinase A [Candidatus Hamiltonella defensa]
          Length = 193

 Score =  173 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 132/191 (69%), Positives = 162/191 (84%)

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD I A+KLGVD+ NLL SQPDTG
Sbjct: 3   EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIXAKKLGVDIDNLLCSQPDTG 62

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++
Sbjct: 63  EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 122

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
             S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GS+K+ + + G++T
Sbjct: 123 KNSNTLLIFINQLRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKNGEEVIGSET 182

Query: 251 RVKVVKNKMAS 261
           RVKVV+   A 
Sbjct: 183 RVKVVRANSAD 193


>gi|163960879|gb|ABY49984.1| recombination protein A [Rhizobium sp. CCBAU 85046]
 gi|163960881|gb|ABY49985.1| recombination protein A [Rhizobium sp. CCBAU 85051]
          Length = 160

 Score =  173 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 131/157 (83%), Positives = 147/157 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE VS+GSLGLDIALG+GG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDA
Sbjct: 3   EIETVSTGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEI
Sbjct: 63  EHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           EG+MG+SLPG+QARLMSQALRKLT+SISRS  +++FI
Sbjct: 123 EGEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFI 159


>gi|299737700|gb|ADJ37173.1| recombinase A [Bradyrhizobium liaoningense]
          Length = 163

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 130/163 (79%), Positives = 152/163 (93%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHAL
Sbjct: 1   VSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+M
Sbjct: 61  DPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIGVM
Sbjct: 121 GDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVM 163


>gi|193090217|gb|ACF15280.1| recombination protein A [Bradyrhizobium elkanii]
          Length = 166

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 120/167 (71%), Positives = 146/167 (87%), Gaps = 1/167 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LG        +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+
Sbjct: 1   SVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V
Sbjct: 60  GQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           +DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 VDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSHTMV 166


>gi|106647417|gb|ABF82347.1| recombinase A [Cupriavidus sp. MApud3.4]
 gi|106647419|gb|ABF82348.1| recombinase A [Cupriavidus sp. cmp60]
 gi|106647427|gb|ABF82352.1| recombinase A [Cupriavidus sp. cmp2]
          Length = 176

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 138/176 (78%), Positives = 160/176 (90%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           LGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGTCAF+DAEHALD  YA
Sbjct: 1   LGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVNYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            KLGV + +LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLP
Sbjct: 61  SKLGVSVGDLLISQPDTGEQALEITDALVRSGSIDLIVIDSVAALVPKAEIEGEMGDSLP 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           G+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+S
Sbjct: 121 GLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYAS 176


>gi|262223167|gb|ACY38156.1| recombination protein RecA [Bradyrhizobium sp. CTAW11]
 gi|262223169|gb|ACY38157.1| recombination protein RecA [Bradyrhizobium sp. CTAW22]
 gi|262223171|gb|ACY38158.1| recombination protein RecA [Bradyrhizobium canariense]
 gi|262223173|gb|ACY38159.1| recombination protein RecA [Bradyrhizobium canariense]
 gi|262223175|gb|ACY38160.1| recombination protein RecA [Bradyrhizobium canariense]
 gi|262223177|gb|ACY38161.1| recombination protein RecA [Bradyrhizobium canariense]
 gi|262223181|gb|ACY38163.1| recombination protein RecA [Bradyrhizobium canariense]
 gi|262223191|gb|ACY38168.1| recombination protein RecA [Bradyrhizobium canariense]
 gi|262223193|gb|ACY38169.1| recombination protein RecA [Bradyrhizobium canariense]
 gi|262223197|gb|ACY38171.1| recombination protein RecA [Bradyrhizobium canariense]
 gi|262223199|gb|ACY38172.1| recombination protein RecA [Bradyrhizobium canariense]
 gi|262223201|gb|ACY38173.1| recombination protein RecA [Bradyrhizobium canariense]
 gi|262223203|gb|ACY38174.1| recombination protein RecA [Bradyrhizobium canariense]
          Length = 161

 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 123/160 (76%), Positives = 146/160 (91%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DA
Sbjct: 2   DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+
Sbjct: 62  EHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAEL 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 122 EGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 161


>gi|325512781|gb|ADZ23579.1| RecA [Sinorhizobium fredii]
 gi|325512787|gb|ADZ23582.1| RecA [Sinorhizobium fredii]
          Length = 162

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 137/162 (84%), Positives = 153/162 (94%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD
Sbjct: 1   STGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG
Sbjct: 61  PIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 121 DSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 162


>gi|325512773|gb|ADZ23575.1| RecA [Sinorhizobium fredii]
          Length = 159

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 134/159 (84%), Positives = 150/159 (94%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD
Sbjct: 1   STGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG
Sbjct: 61  PIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKI
Sbjct: 121 DSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKI 159


>gi|163960877|gb|ABY49983.1| recombination protein A [Rhizobium sp. CCBAU 85045]
          Length = 160

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 130/157 (82%), Positives = 147/157 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDA
Sbjct: 3   EIETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEI
Sbjct: 63  EHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           EG+MG+SLPG+QARLMSQALRKLT+SIS+SK +++FI
Sbjct: 123 EGEMGDSLPGLQARLMSQALRKLTASISKSKTMVIFI 159


>gi|222544077|gb|ACM66899.1| recombinase A [Rhizobium gallicum]
 gi|222544079|gb|ACM66900.1| recombinase A [Rhizobium gallicum]
          Length = 145

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 116/146 (79%), Positives = 133/146 (91%), Gaps = 1/146 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG+IM+LGS  ++ E IE +S+GSL LDIALGIGG PKGRI+EIYGPESSGKTT
Sbjct: 1   IERSFGKGSIMKLGSNENVVE-IETISTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVR
Sbjct: 60  LALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMG 168
           SGAVD++V+DSVAALTPRAEIEG+MG
Sbjct: 120 SGAVDVLVVDSVAALTPRAEIEGEMG 145


>gi|114150686|gb|ABI51989.1| recombinase A [Pseudomonas sp. PTB2016]
          Length = 190

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 136/190 (71%), Positives = 166/190 (87%)

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IV+DSV
Sbjct: 1   GATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSV 60

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFGSP
Sbjct: 61  AALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSP 120

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           ETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+YG+
Sbjct: 121 ETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQILYGK 180

Query: 275 GISFFGELID 284
           GI   GE+ID
Sbjct: 181 GIYLNGEMID 190


>gi|329666362|gb|AEB96232.1| recombinase A [Rhizobium sp. CCNWSX0906]
          Length = 145

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 119/146 (81%), Positives = 134/146 (91%), Gaps = 1/146 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG+IM+LGS  ++ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTT
Sbjct: 1   IERSFGKGSIMKLGSNENVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVR
Sbjct: 60  LALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMG 168
           SGAVD++V+DSVAALTPRAEIEG+MG
Sbjct: 120 SGAVDVLVVDSVAALTPRAEIEGEMG 145


>gi|307343392|emb|CBJ18137.1| recombinase A [Micromonospora sp. GUI37]
          Length = 173

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 126/173 (72%), Positives = 147/173 (84%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHALD  Y
Sbjct: 1   SIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHALDPEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDALLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
            G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG ALK
Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALK 173


>gi|163960875|gb|ABY49982.1| recombination protein A [Rhizobium etli]
          Length = 160

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 131/157 (83%), Positives = 148/157 (94%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA+SQK GG CAFVDA
Sbjct: 3   EIETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAESQKKGGICAFVDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEI
Sbjct: 63  EHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           EG+MG+SLPG+QARLMSQALRKLT+SIS+SK +++FI
Sbjct: 123 EGEMGDSLPGLQARLMSQALRKLTASISKSKTMVIFI 159


>gi|325651023|emb|CBY89333.1| RecA protein [Bradyrhizobium japonicum]
 gi|325651029|emb|CBY89336.1| RecA protein [Bradyrhizobium japonicum]
 gi|325651031|emb|CBY89337.1| RecA protein [Bradyrhizobium japonicum]
 gi|325651035|emb|CBY89339.1| RecA protein [Bradyrhizobium japonicum]
          Length = 165

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 122/166 (73%), Positives = 146/166 (87%), Gaps = 1/166 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G++M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A
Sbjct: 1   GSVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           ++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++
Sbjct: 60  EAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVL 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  
Sbjct: 120 VVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNT 165


>gi|262223187|gb|ACY38166.1| recombination protein RecA [Bradyrhizobium sp. CTAW71]
          Length = 161

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 123/160 (76%), Positives = 146/160 (91%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DA
Sbjct: 2   DVESVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+
Sbjct: 62  EHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAEL 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 122 EGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 161


>gi|213012326|gb|ACJ38729.1| recombination-repair protein [Photobacterium sp. R-16]
          Length = 183

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 134/183 (73%), Positives = 161/183 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLEAIACAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVK 180

Query: 257 NKM 259
           NK+
Sbjct: 181 NKI 183


>gi|162955832|gb|ABY25291.1| recombinant DNA repair protein [Vibrio sp. MSSRF28]
 gi|167077377|gb|ABZ10910.1| recombinant DNA repair protein [Vibrio sp. MSSRF2]
          Length = 166

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 111/168 (66%), Positives = 140/168 (83%), Gaps = 2/168 (1%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG   ++   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+
Sbjct: 1   RLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAAAQR 58

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            G TCAF+DAEHALD +YA+KLGVD++ LL+SQPDTGEQALEI D L RSGA+D++VIDS
Sbjct: 59  EGKTCAFIDAEHALDPVYAKKLGVDIEALLVSQPDTGEQALEICDALARSGAIDVMVIDS 118

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           VAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FIN
Sbjct: 119 VAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFIN 166


>gi|290889075|gb|ADD69887.1| recombination protein A [Rhizobium lusitanum]
          Length = 157

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 131/157 (83%), Positives = 149/157 (94%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD
Sbjct: 1   STGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIEG+MG
Sbjct: 61  PVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RM
Sbjct: 121 DSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRM 157


>gi|226934318|gb|ACO92349.1| recombination protein A [Rhizobium sp. M20]
          Length = 164

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 127/163 (77%), Positives = 146/163 (89%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           +      IE + +GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG 
Sbjct: 2   RQDSIVEIETIPTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGI 61

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAAL
Sbjct: 62  CAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAAL 121

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           TPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FI
Sbjct: 122 TPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFI 164


>gi|301318400|gb|ADK67115.1| RecA protein [Stenotrophomonas humi]
          Length = 182

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 136/182 (74%), Positives = 157/182 (86%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +EV+ +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EPVEVIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKLGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+V+DSVAALTP+AE
Sbjct: 61  AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDIVVVDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS  ++VFINQ+R KIGVM    SPE TTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRHKIGVMMPGQSPEVTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|299737724|gb|ADJ37185.1| recombinase A [Bradyrhizobium sp. CCBAU 45281]
          Length = 160

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 125/160 (78%), Positives = 148/160 (92%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHA
Sbjct: 1   AVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+
Sbjct: 61  LDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 MGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 160


>gi|299737712|gb|ADJ37179.1| recombinase A [Bradyrhizobium japonicum]
          Length = 159

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 124/159 (77%), Positives = 148/159 (93%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHAL
Sbjct: 1   VSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+M
Sbjct: 61  DPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 GDALPGLQARLMSQALRKLTASINKSHTMVIFINQIRMK 159


>gi|312285000|gb|ADQ64252.1| recombinase A [Bradyrhizobium sp. ISLU15]
          Length = 165

 Score =  172 bits (435), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 123/165 (74%), Positives = 146/165 (88%), Gaps = 1/165 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG        +E +SSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+
Sbjct: 2   KGSVMKLGKNDRSM-DVESISSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTV 60

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD+
Sbjct: 61  AEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDV 120

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           +VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 121 LVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 165


>gi|299737720|gb|ADJ37183.1| recombinase A [Bradyrhizobium sp. CCBAU 45389]
          Length = 160

 Score =  172 bits (435), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 125/160 (78%), Positives = 148/160 (92%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEH
Sbjct: 1   EAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG
Sbjct: 61  ALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RM
Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRM 160


>gi|312284962|gb|ADQ64233.1| recombinase A [Bradyrhizobium sp. ISLU16]
 gi|312284974|gb|ADQ64239.1| recombinase A [Bradyrhizobium sp. ISLU13]
          Length = 165

 Score =  172 bits (435), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 124/165 (75%), Positives = 146/165 (88%), Gaps = 1/165 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+
Sbjct: 2   KGSVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTV 60

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD+
Sbjct: 61  AEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDV 120

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           +VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 121 LVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 165


>gi|33087841|gb|AAP93051.1| recombination protein A [Yersinia kristensenii]
          Length = 164

 Score =  172 bits (435), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 112/166 (67%), Positives = 136/166 (81%), Gaps = 2/166 (1%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           +I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +
Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNA 164


>gi|213012442|gb|ACJ38787.1| recombination-repair protein [Vibrio sp. R-642]
 gi|213012546|gb|ACJ38839.1| recombination-repair protein [Vibrio alginolyticus]
          Length = 186

 Score =  172 bits (435), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 131/186 (70%), Positives = 164/186 (88%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180

Query: 257 NKMASP 262
           NK+A+P
Sbjct: 181 NKIAAP 186


>gi|213012350|gb|ACJ38741.1| recombination-repair protein [Aliivibrio fischeri]
          Length = 190

 Score =  172 bits (435), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 133/190 (70%), Positives = 165/190 (86%)

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RS
Sbjct: 1   TLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARS 60

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVD++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+
Sbjct: 61  GAVDVMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQI 120

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+KVVKNK+A+PF
Sbjct: 121 RMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGNETRIKVVKNKIAAPF 180

Query: 264 KQVEFDIMYG 273
           KQ E  IMYG
Sbjct: 181 KQAETQIMYG 190


>gi|325651033|emb|CBY89338.1| RecA protein [Bradyrhizobium japonicum]
          Length = 166

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 122/167 (73%), Positives = 147/167 (88%), Gaps = 1/167 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           +G++M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+
Sbjct: 1   EGSVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTV 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD+
Sbjct: 60  AEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           +V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  
Sbjct: 120 LVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNT 166


>gi|33087797|gb|AAP93029.1| recombination protein A [Yersinia bercovieri]
          Length = 167

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 111/169 (65%), Positives = 137/169 (81%), Gaps = 2/169 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I
Sbjct: 59  AAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVI 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           ++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+
Sbjct: 119 IVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLI 167


>gi|329666364|gb|AEB96233.1| recombinase A [Rhizobium sp. CCNWSX0914]
          Length = 145

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 119/146 (81%), Positives = 134/146 (91%), Gaps = 1/146 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG+IM+LGS  ++ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTT
Sbjct: 1   IERAFGKGSIMKLGSNENVIE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVR
Sbjct: 60  LALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMG 168
           SGAVD++V+DSVAALTPRAEIEG+MG
Sbjct: 120 SGAVDVLVVDSVAALTPRAEIEGEMG 145


>gi|290889079|gb|ADD69889.1| recombination protein A [Rhizobium sp. CCBAU 15278]
          Length = 157

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 131/157 (83%), Positives = 149/157 (94%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLDIALGIGG PKGRI+E+YGPESSGKTTLAL TIA++QK GG CAFVDAEHALD
Sbjct: 1   STGSLGLDIALGIGGLPKGRIIEVYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGVDL NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG
Sbjct: 61  PVYARKLGVDLHNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +SLPG+QARLMSQALRKLT+SIS+SK +++FINQ+RM
Sbjct: 121 DSLPGLQARLMSQALRKLTASISKSKTMVIFINQIRM 157


>gi|268308917|gb|ACY95419.1| recombination protein A [Rhizobium sp. CCBAU 05176]
 gi|268308919|gb|ACY95420.1| recombination protein A [Rhizobium sp. CCBAU 45071]
 gi|268308925|gb|ACY95423.1| recombination protein A [Rhizobium sp. CCBAU 45248]
 gi|297528275|gb|ADI46173.1| recombination protein A [Rhizobium sp. CCBAU 05104]
          Length = 159

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 133/159 (83%), Positives = 150/159 (94%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD 
Sbjct: 1   TGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+
Sbjct: 61  VYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIG
Sbjct: 121 SLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIG 159


>gi|193090227|gb|ACF15285.1| recombination protein A [Bradyrhizobium sp. CCBAU 65831]
          Length = 166

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 125/167 (74%), Positives = 147/167 (88%), Gaps = 1/167 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LG        IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A+
Sbjct: 1   SVMKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V
Sbjct: 60  AQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           +DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 VDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 166


>gi|5002513|emb|CAB44332.1| RecA protein [Acidothermus cellulolyticus 11B]
          Length = 186

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 128/185 (69%), Positives = 155/185 (83%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTLALH +A +Q+ GG  AF+DAEHALD  YA+KLGVD  NLL+SQPDTGEQALEI
Sbjct: 2   SSGKTTLALHAVANAQRAGGIAAFIDAEHALDPEYAKKLGVDTDNLLVSQPDTGEQALEI 61

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L+RSGA+D++VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T ++S S   
Sbjct: 62  ADTLIRSGAIDVVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGALSHSGTT 121

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+R K+GV FGSPETTTGG ALKFY+S+RLD+RR+ +IK+     GN+TRVKVVK
Sbjct: 122 AIFINQLREKVGVFFGSPETTTGGKALKFYASIRLDVRRIDTIKEGQEAIGNRTRVKVVK 181

Query: 257 NKMAS 261
           NK+A 
Sbjct: 182 NKVAP 186


>gi|270266149|gb|ACZ65007.1| recombinase A [Mesorhizobium sp. CCNWXJ16-1]
          Length = 150

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 119/151 (78%), Positives = 137/151 (90%), Gaps = 1/151 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG+   I E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+
Sbjct: 1   KGSIMRLGANEKIVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTV 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGAVD+
Sbjct: 60  AEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
           +V+DSVAALTPRAEIEG+MG+SLP +QARLM
Sbjct: 120 LVVDSVAALTPRAEIEGEMGDSLPALQARLM 150


>gi|255018716|ref|ZP_05290842.1| recombinase A [Listeria monocytogenes FSL F2-515]
          Length = 165

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 78/159 (49%), Positives = 115/159 (72%), Gaps = 2/159 (1%)

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
           K I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR   +K    + GN+T++K
Sbjct: 1   KTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKTKIK 60

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VVKNK+A PF+  E DIMYGEGIS  GEL+D+  +  +++KSG+W+S+K +R+GQGREN+
Sbjct: 61  VVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGRENA 120

Query: 314 KIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           K +L+E+ +I + I   +R+   +  D   +EP    ++
Sbjct: 121 KQYLKEHTDIRDEISKRVREEYEI--DGSSKEPLDEKEE 157


>gi|325512845|gb|ADZ23611.1| RecA [Bradyrhizobium yuanmingense]
          Length = 159

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 125/159 (78%), Positives = 148/159 (93%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHAL
Sbjct: 1   VSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+M
Sbjct: 61  DPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 GDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 159


>gi|325512807|gb|ADZ23592.1| RecA [Bradyrhizobium japonicum]
          Length = 160

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 124/160 (77%), Positives = 148/160 (92%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHA
Sbjct: 1   AVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+
Sbjct: 61  LDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 MGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 160


>gi|213012362|gb|ACJ38747.1| recombination-repair protein [Vibrio sp. R-54]
          Length = 190

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 130/190 (68%), Positives = 164/190 (86%)

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RS
Sbjct: 1   TLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARS 60

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+
Sbjct: 61  GAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQI 120

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PF
Sbjct: 121 RMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPF 180

Query: 264 KQVEFDIMYG 273
           K+    IMYG
Sbjct: 181 KEANTQIMYG 190


>gi|290889085|gb|ADD69892.1| recombination protein A [Rhizobium alamii]
          Length = 157

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 129/157 (82%), Positives = 148/157 (94%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD
Sbjct: 1   STGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG
Sbjct: 61  PVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RM
Sbjct: 121 DSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRM 157


>gi|193090219|gb|ACF15281.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|193090221|gb|ACF15282.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|193090245|gb|ACF15294.1| recombination protein A [Bradyrhizobium yuanmingense]
          Length = 166

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 123/167 (73%), Positives = 147/167 (88%), Gaps = 1/167 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LG        IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A+
Sbjct: 1   SVMKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V
Sbjct: 60  AQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           +DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  ++
Sbjct: 120 VDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 166


>gi|301318402|gb|ADK67116.1| RecA protein [Stenotrophomonas terrae]
          Length = 182

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 136/182 (74%), Positives = 158/182 (86%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +E++ +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EPVEIIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKLGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+V+DSVAALTPRAE
Sbjct: 61  AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDIVVVDSVAALTPRAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS  +++FINQ+RMKIGVM    SPE TTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPEVTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|307343354|emb|CBJ18118.1| recombinase A [Micromonospora purpureochromogenes]
          Length = 172

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 124/172 (72%), Positives = 147/172 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AF+DAEHALD  Y
Sbjct: 1   SIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPDY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD   LL+SQPDTGEQALEITDMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AKALGVDTDALLVSQPDTGEQALEITDMLVRSGAIDIVVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
            G+QARLMSQALRK+T  ++ +    +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRAL 172


>gi|207080797|gb|ACI22742.1| RecA [Rhizobium sp. J3-N4]
          Length = 162

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 128/160 (80%), Positives = 145/160 (90%), Gaps = 1/160 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG+   I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TI
Sbjct: 4   KGSVMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 62

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 63  AEAQKKGGVCAFVDAEHALDPVYARKLGVDLQGLLISQPDTGEQALEITDTLVRSGAIDV 122

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           +VIDSVAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT 
Sbjct: 123 LVIDSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKLTG 162


>gi|291172956|gb|ADD82745.1| recombinase A [Rhizobium sp. CCBAU 85050]
 gi|291172964|gb|ADD82749.1| recombinase A [Rhizobium sp. CCBAU 83011]
          Length = 158

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 130/158 (82%), Positives = 149/158 (94%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GSL LDIALGIGG PKGR++EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD 
Sbjct: 1   TGSLSLDIALGIGGLPKGRVIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAAL PRAEIEG+MG+
Sbjct: 61  VYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALVPRAEIEGEMGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKI
Sbjct: 121 SLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKI 158


>gi|163960869|gb|ABY49979.1| recombination protein A [Rhizobium giardinii]
          Length = 159

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 131/157 (83%), Positives = 147/157 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDA
Sbjct: 3   EIETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEI
Sbjct: 63  EHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           EG+MG+SLPG+QARLMSQALRKLT+SIS+S C+++FI
Sbjct: 123 EGEMGDSLPGLQARLMSQALRKLTASISKSNCMVIFI 159


>gi|207080799|gb|ACI22743.1| RecA [Sinorhizobium sp. J3-39]
 gi|207080801|gb|ACI22744.1| RecA [Sinorhizobium sp. J3-44]
 gi|207080815|gb|ACI22751.1| RecA [Sinorhizobium sp. J3-47-2]
 gi|207080829|gb|ACI22758.1| RecA [Sinorhizobium sp. J3-N55]
          Length = 161

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 130/160 (81%), Positives = 147/160 (91%), Gaps = 1/160 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG + SI E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL T+
Sbjct: 3   KGSVMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTV 61

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 62  AEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDV 121

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           +V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+
Sbjct: 122 LVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTA 161


>gi|62548803|gb|AAX86853.1| RecA [Rhizobium etli bv. phaseoli]
          Length = 160

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 132/161 (81%), Positives = 150/161 (93%), Gaps = 1/161 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  ++ E IE +S+GSLGLDIALG+GG PKGRI+EIYGPESSGKTTLAL TIA+SQ
Sbjct: 1   MKLGSNENVIE-IETISTGSLGLDIALGVGGLPKGRIIEIYGPESSGKTTLALQTIAESQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 160


>gi|207080795|gb|ACI22741.1| RecA [Sinorhizobium sp. J3-46]
          Length = 160

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 130/160 (81%), Positives = 147/160 (91%), Gaps = 1/160 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG + SI E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL T+
Sbjct: 2   KGSVMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTV 60

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 61  AEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDV 120

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           +V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+
Sbjct: 121 LVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTA 160


>gi|194476415|gb|ACF74772.1| RecA [Rhizobium sp. CCBAU 83476]
          Length = 167

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 133/161 (82%), Positives = 153/161 (95%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SGS+GLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD 
Sbjct: 7   SGSVGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDP 66

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+
Sbjct: 67  VYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGD 126

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIGVM
Sbjct: 127 SLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 167


>gi|213012356|gb|ACJ38744.1| recombination-repair protein [Vibrio chagasii]
          Length = 187

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 135/187 (72%), Positives = 164/187 (87%)

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+
Sbjct: 1   LIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 60

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK
Sbjct: 61  DVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 120

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ 
Sbjct: 121 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQA 180

Query: 267 EFDIMYG 273
           E  I+YG
Sbjct: 181 ETQILYG 187


>gi|213012570|gb|ACJ38851.1| recombination-repair protein [Vibrio tubiashii]
          Length = 188

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 132/188 (70%), Positives = 164/188 (87%)

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA
Sbjct: 1   ECIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGA 60

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RM
Sbjct: 61  IDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRM 120

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ
Sbjct: 121 KIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQ 180

Query: 266 VEFDIMYG 273
            E  I+YG
Sbjct: 181 AETQILYG 188


>gi|62548801|gb|AAX86852.1| RecA [Rhizobium etli bv. phaseoli]
          Length = 160

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 131/161 (81%), Positives = 150/161 (93%), Gaps = 1/161 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  ++ E IE +S+GSLGLDIALG+GG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENVIE-IETISTGSLGLDIALGVGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 160


>gi|290889055|gb|ADD69877.1| recombination protein A [Rhizobium sp. CCBAU 45133]
 gi|290889077|gb|ADD69888.1| recombination protein A [Agrobacterium rhizogenes]
          Length = 157

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 130/157 (82%), Positives = 148/157 (94%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD
Sbjct: 1   STGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG
Sbjct: 61  PVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RM
Sbjct: 121 DSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRM 157


>gi|159147885|dbj|BAF92016.1| recombinase A [Lactobacillus ingluviei]
 gi|159147887|dbj|BAF92017.1| recombinase A [Lactobacillus ingluviei]
 gi|159147889|dbj|BAF92018.1| recombinase A [Lactobacillus ingluviei]
 gi|159147891|dbj|BAF92019.1| recombinase A [Lactobacillus ingluviei]
          Length = 172

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 115/172 (66%), Positives = 150/172 (87%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSGSL +D ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ Q+ GGT A++DAE+A+D
Sbjct: 1   SSGSLAIDEALGVGGYPRGRIIEMYGPESSGKTTVALHAVAEVQQQGGTAAYIDAENAMD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
             YA+ LGVD+ NLL+SQPDTGEQ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG
Sbjct: 61  PEYAKALGVDIDNLLLSQPDTGEQGLQIADALISSGAIDIVVVDSVAALVPRAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
           ++  G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG
Sbjct: 121 DAHVGLQARLMSQALRKLSGTINKTKTIAIFINQIREKVGVMFGNPETTPGG 172


>gi|62548795|gb|AAX86849.1| RecA [Rhizobium gallicum bv. gallicum]
 gi|62548797|gb|AAX86850.1| RecA [Rhizobium mongolense]
 gi|62548799|gb|AAX86851.1| RecA [Rhizobium yanglingense]
          Length = 160

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 131/161 (81%), Positives = 149/161 (92%), Gaps = 1/161 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  ++ E IE +S+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENVVE-IETISTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 160


>gi|270266145|gb|ACZ65005.1| recombinase A [Mesorhizobium sp. CCNWXJ40-4]
 gi|270266147|gb|ACZ65006.1| recombinase A [Mesorhizobium sp. CCNWXJ32-3]
          Length = 150

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 120/151 (79%), Positives = 138/151 (91%), Gaps = 1/151 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG+   I E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+
Sbjct: 1   KGSIMRLGANEKIVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTV 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGAVD+
Sbjct: 60  AEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
           +V+DSVAALTPRAEIEG+MG+SLPG+QARLM
Sbjct: 120 LVVDSVAALTPRAEIEGEMGDSLPGLQARLM 150


>gi|158147277|gb|ABW22692.1| recA [Sinorhizobium sp. CCBAU 83622]
 gi|158147285|gb|ABW22696.1| recA [Sinorhizobium sp. CCBAU 83666]
 gi|158147299|gb|ABW22703.1| recA [Sinorhizobium sp. CCBAU 83751]
 gi|325512829|gb|ADZ23603.1| RecA [Sinorhizobium fredii]
 gi|325512835|gb|ADZ23606.1| RecA [Sinorhizobium fredii]
          Length = 158

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 133/158 (84%), Positives = 149/158 (94%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD
Sbjct: 1   STGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG
Sbjct: 61  PIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           +SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 121 DSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 158


>gi|325651017|emb|CBY89330.1| RecA protein [Bradyrhizobium japonicum]
          Length = 158

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 118/159 (74%), Positives = 140/159 (88%), Gaps = 1/159 (0%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           R +GKG++M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLA
Sbjct: 1   RSFGKGSVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLA 59

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LHT+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSG
Sbjct: 60  LHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSG 119

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           AVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQAL
Sbjct: 120 AVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQAL 158


>gi|325512843|gb|ADZ23610.1| RecA [Bradyrhizobium sp. CCBAU 23303]
          Length = 159

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 125/159 (78%), Positives = 148/159 (93%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD
Sbjct: 1   SSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG
Sbjct: 61  PVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 DALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 159


>gi|163960847|gb|ABY49968.1| recombination protein A [Rhizobium gallicum]
 gi|163960867|gb|ABY49978.1| recombination protein A [Rhizobium mongolense]
          Length = 158

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 127/156 (81%), Positives = 145/156 (92%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDA
Sbjct: 3   EIETISTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEI
Sbjct: 63  EHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           EG+MG+SLPG+QARLMSQALRKLT+SIS+S  +++F
Sbjct: 123 EGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIF 158


>gi|158147283|gb|ABW22695.1| recA [Bradyrhizobium yuanmingense]
 gi|158147293|gb|ABW22700.1| recA [Bradyrhizobium yuanmingense]
          Length = 157

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 123/157 (78%), Positives = 145/157 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 1   IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E
Sbjct: 61  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FIN
Sbjct: 121 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFIN 157


>gi|325651053|emb|CBY89348.1| RecA protein [Bradyrhizobium sp. R-46211=t424]
          Length = 156

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 115/157 (73%), Positives = 137/157 (87%), Gaps = 1/157 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           +R +GKG++M+LG        +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTL
Sbjct: 1   ERSFGKGSVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           ALHT+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRS
Sbjct: 60  ALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRS 119

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           GAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMS
Sbjct: 120 GAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMS 156


>gi|213012354|gb|ACJ38743.1| recombination-repair protein [Vibrio chagasii]
          Length = 188

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 135/188 (71%), Positives = 164/188 (87%)

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA
Sbjct: 1   ELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGA 60

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RM
Sbjct: 61  IDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRM 120

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ
Sbjct: 121 KIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQ 180

Query: 266 VEFDIMYG 273
            E  I+YG
Sbjct: 181 AETQILYG 188


>gi|226934320|gb|ACO92350.1| recombination protein A [Rhizobium sp. R21]
          Length = 161

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 127/157 (80%), Positives = 145/157 (92%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE + +GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDA
Sbjct: 5   EIETIPTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDA 64

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEI
Sbjct: 65  EHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEI 124

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           EG+MG+SLPG+QARLMSQALRKLT+SIS+S  +++FI
Sbjct: 125 EGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFI 161


>gi|301318434|gb|ADK67132.1| RecA protein [Stenotrophomonas chelatiphaga]
          Length = 182

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 134/182 (73%), Positives = 156/182 (85%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +E++ +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EPVEIIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKKGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRS +VDI+V+DSVAALTP+AE
Sbjct: 61  AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSNSVDIVVVDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS  ++VFINQ+R KIGVM    SPE TTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRHKIGVMMPGQSPEVTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|291246133|gb|ADD85191.1| RecA [Borrelia recurrentis]
          Length = 194

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 124/187 (66%), Positives = 162/187 (86%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           + LD A+GIGG+P+GR+VEI+GPESSGKTTL L  IA+ QKTGG  AF+DAEHALD +YA
Sbjct: 2   ILLDEAIGIGGYPRGRVVEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAEHALDPVYA 61

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           R LGV++  L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAAL P+AEI+G+MG++  
Sbjct: 62  RALGVNINELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALMPQAEIDGEMGDTQI 121

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QARLMS+ALRK+T+ +S+S   ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL+
Sbjct: 122 GLQARLMSKALRKITAILSKSNACIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLE 181

Query: 233 IRRVGSI 239
           +R+V  +
Sbjct: 182 VRKVEQV 188


>gi|298103536|emb|CBH19579.1| recombinase A [Mesorhizobium sp. CGS22]
          Length = 142

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 107/142 (75%), Positives = 126/142 (88%), Gaps = 1/142 (0%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           ALSQI+R +GKG+IM+LG+   + E I  VS+GSLGLDIALG+GG P+GRI+EIYGPESS
Sbjct: 1   ALSQIERAFGKGSIMRLGANEQVVE-IGTVSTGSLGLDIALGVGGLPRGRIIEIYGPESS 59

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D
Sbjct: 60  GKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICD 119

Query: 139 MLVRSGAVDIIVIDSVAALTPR 160
            LVRSGA+D++V+DS A LTPR
Sbjct: 120 TLVRSGAIDVLVVDSAAVLTPR 141


>gi|262013560|gb|ACY06852.1| recombination protein A [Yersinia sp. APN5b-c]
          Length = 166

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 112/167 (67%), Positives = 135/167 (80%), Gaps = 2/167 (1%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KGAIM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  I
Sbjct: 1   KGAIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+
Sbjct: 59  AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  
Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANT 165


>gi|51235251|gb|AAT98470.1| recombination protein A [Rhizobium huautlense]
 gi|51235259|gb|AAT98474.1| recombination protein A [Rhizobium huautlense]
 gi|51235261|gb|AAT98475.1| recombination protein A [Rhizobium huautlense]
          Length = 160

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 135/161 (83%), Positives = 149/161 (92%), Gaps = 1/161 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  +I E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRS 160


>gi|29652009|gb|AAO87667.1| RecA [Listeria monocytogenes]
          Length = 164

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 113/162 (69%), Positives = 139/162 (85%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + I  +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA+ Q  GGT AF+D
Sbjct: 3   QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEVQAQGGTAAFID 62

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA+ LGV++  LL+SQPDTGEQALEI + LVRSGAVD++VIDSVAAL PRAE
Sbjct: 63  AEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLVIDSVAALVPRAE 122

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           IEG+MG++  G+QARLMSQALRKL+  I++SK I +FINQ+R
Sbjct: 123 IEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIR 164


>gi|158147307|gb|ABW22707.1| recA [Bradyrhizobium liaoningense]
          Length = 157

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 124/157 (78%), Positives = 145/157 (92%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEH
Sbjct: 1   EAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG
Sbjct: 61  ALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           +MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ
Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQ 157


>gi|330369292|gb|AEC12036.1| recombination protein A [Bradyrhizobium sp. CCBAU 051161]
          Length = 160

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 126/160 (78%), Positives = 149/160 (93%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD
Sbjct: 1   SSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG
Sbjct: 61  PVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           ++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIG
Sbjct: 121 DALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIG 160


>gi|325512791|gb|ADZ23584.1| RecA [Bradyrhizobium liaoningense]
          Length = 159

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 126/159 (79%), Positives = 148/159 (93%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHAL
Sbjct: 1   VSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+M
Sbjct: 61  DPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 GDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 159


>gi|299737704|gb|ADJ37175.1| recombinase A [Bradyrhizobium yuanmingense]
 gi|299737706|gb|ADJ37176.1| recombinase A [Bradyrhizobium yuanmingense]
 gi|299737710|gb|ADJ37178.1| recombinase A [Bradyrhizobium yuanmingense]
          Length = 159

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 124/159 (77%), Positives = 147/159 (92%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHA
Sbjct: 1   AVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+
Sbjct: 61  LDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGE 120

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RM
Sbjct: 121 MGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRM 159


>gi|114150684|gb|ABI51988.1| recombinase A [Rahnella aquatilis]
          Length = 187

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 135/187 (72%), Positives = 165/187 (88%)

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           CAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAAL
Sbjct: 1   CAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAAL 60

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
           TP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ+RMKIGVMFG+PETT
Sbjct: 61  TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQIRMKIGVMFGNPETT 120

Query: 218 TGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277
           TGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A+PFKQ EF IMYGEGI+
Sbjct: 121 TGGNALKFYASVRLDIRRIGAIKEGDVVVGSETRVKVVKNKIAAPFKQAEFQIMYGEGIN 180

Query: 278 FFGELID 284
             GELID
Sbjct: 181 INGELID 187


>gi|291246129|gb|ADD85189.1| RecA [Borrelia recurrentis]
          Length = 189

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 124/187 (66%), Positives = 162/187 (86%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           + LD A+GIGG+P+GR+VEI+GPESSGKTTL L  IA+ QKTGG  AF+DAEHALD +YA
Sbjct: 1   ILLDEAIGIGGYPRGRVVEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAEHALDPVYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           R LGV++  L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAAL P+AEI+G+MG++  
Sbjct: 61  RALGVNINELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALMPQAEIDGEMGDTQI 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+QARLMS+ALRK+T+ +S+S   ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL+
Sbjct: 121 GLQARLMSKALRKITAILSKSNACIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLE 180

Query: 233 IRRVGSI 239
           +R+V  +
Sbjct: 181 VRKVEQV 187


>gi|169883828|gb|ACA98010.1| recombination protein A [Sinorhizobium meliloti]
 gi|169883830|gb|ACA98011.1| recombination protein A [Sinorhizobium meliloti]
          Length = 167

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 137/164 (83%), Positives = 153/164 (93%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+GSLGLD+ALGIGG  KGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHA
Sbjct: 4   AVSTGSLGLDLALGIGGLRKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHA 63

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+
Sbjct: 64  LDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVIDSVAALVPRAEIEGE 123

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 124 MGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 167


>gi|163960873|gb|ABY49981.1| recombination protein A [Rhizobium sp. CCBAU 85011]
          Length = 159

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 127/157 (80%), Positives = 145/157 (92%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDA
Sbjct: 3   EIETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEI
Sbjct: 63  EHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           EG+MG+SLPG+QARLMSQALRKLT+SIS+S  +++F 
Sbjct: 123 EGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFT 159


>gi|160375163|gb|ABX38950.1| recombinase protein A [Mesorhizobium albiziae]
          Length = 147

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 113/148 (76%), Positives = 134/148 (90%), Gaps = 1/148 (0%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           R +GKG+IM+LG+   + E I  VS+GSLGLDIALG+GG P+GRI+EIYGPESSGKTT+A
Sbjct: 1   RAFGKGSIMRLGANEQVVE-IGTVSTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTMA 59

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSG
Sbjct: 60  LHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSG 119

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLP 172
           A+D++V+DSVAALTPRAEIEG+MG+SLP
Sbjct: 120 AIDVLVVDSVAALTPRAEIEGEMGDSLP 147


>gi|213012352|gb|ACJ38742.1| recombination-repair protein [Vibrio chagasii]
          Length = 186

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 135/186 (72%), Positives = 164/186 (88%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D
Sbjct: 1   IAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAID 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI
Sbjct: 61  VLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 120

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ E
Sbjct: 121 GVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQAE 180

Query: 268 FDIMYG 273
             I+YG
Sbjct: 181 TQILYG 186


>gi|114150688|gb|ABI51990.1| recombinase A [Pseudomonas fluorescens]
          Length = 186

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 133/186 (71%), Positives = 162/186 (87%)

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IV+DSV
Sbjct: 1   GATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSV 60

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFGSP
Sbjct: 61  AALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSP 120

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           ETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+YG+
Sbjct: 121 ETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQILYGK 180

Query: 275 GISFFG 280
           GI   G
Sbjct: 181 GIYLNG 186


>gi|298566928|gb|ADI86540.1| recombination protein A [Bradyrhizobium elkanii]
          Length = 159

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 122/158 (77%), Positives = 146/158 (92%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD
Sbjct: 1   SSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG
Sbjct: 61  PVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           ++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 DALPGLQARLMSQALRKLTASINKSHTMVIFINQIRMK 158


>gi|33087817|gb|AAP93039.1| recombination protein A [Yersinia frederiksenii]
          Length = 171

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 115/166 (69%), Positives = 139/166 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DA
Sbjct: 6   DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRAGKTCAFIDA 65

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEI
Sbjct: 66  EHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEI 125

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           EG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ+RMKIGV
Sbjct: 126 EGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQIRMKIGV 171


>gi|301318404|gb|ADK67117.1| RecA protein [Pseudoxanthomonas dokdonensis]
          Length = 182

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 133/182 (73%), Positives = 156/182 (85%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E IE++ +GSL LD ALGIGG P+GR+VEIYGPESSGKTTL L  IAQ QK GGT AF+D
Sbjct: 1   EPIEIIPTGSLMLDNALGIGGLPRGRVVEIYGPESSGKTTLTLQAIAQCQKQGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA +LGV++ +LL+SQPDTGEQALEI+DMLVRSG+VDI+V+DSVAALTP+AE
Sbjct: 61  AEHALDPIYAARLGVNVDDLLLSQPDTGEQALEISDMLVRSGSVDIVVVDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS   ++FINQ+RMKIG M    SPE TTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTTVIFINQLRMKIGAMMPGQSPEVTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|299737702|gb|ADJ37174.1| recombinase A [Bradyrhizobium yuanmingense]
 gi|299737718|gb|ADJ37182.1| recombinase A [Bradyrhizobium sp. CCBAU 051107]
 gi|299737722|gb|ADJ37184.1| recombinase A [Bradyrhizobium sp. CCBAU 45384]
          Length = 158

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 124/158 (78%), Positives = 147/158 (93%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHAL
Sbjct: 1   VSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+M
Sbjct: 61  DPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           G++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RM
Sbjct: 121 GDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRM 158


>gi|325512801|gb|ADZ23589.1| RecA [Sinorhizobium fredii]
          Length = 158

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 133/158 (84%), Positives = 149/158 (94%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD 
Sbjct: 1   TGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+
Sbjct: 61  IYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKI
Sbjct: 121 SLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKI 158


>gi|158147287|gb|ABW22697.1| recA [Bradyrhizobium liaoningense]
 gi|158147289|gb|ABW22698.1| recA [Bradyrhizobium liaoningense]
 gi|158147305|gb|ABW22706.1| recA [Bradyrhizobium liaoningense]
          Length = 157

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 124/157 (78%), Positives = 145/157 (92%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE
Sbjct: 1   IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E
Sbjct: 61  HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           G+MG++LPG+QARLMSQALRKLT+SI++S  +++FIN
Sbjct: 121 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFIN 157


>gi|325651019|emb|CBY89331.1| RecA protein [Bradyrhizobium japonicum]
          Length = 158

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 119/159 (74%), Positives = 141/159 (88%), Gaps = 1/159 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRK
Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRK 158


>gi|27358008|gb|AAN86820.1| RecA [Burkholderia cf. cepacia]
          Length = 153

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 103/143 (72%), Positives = 122/143 (85%), Gaps = 1/143 (0%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPES
Sbjct: 1   AALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPES 59

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEIT
Sbjct: 60  SGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEIT 119

Query: 138 DMLVRSGAVDIIVIDSVAALTPR 160
           D LVRSG++D+IVIDSVAAL PR
Sbjct: 120 DALVRSGSIDMIVIDSVAALVPR 142


>gi|33087863|gb|AAP93062.1| recombination protein A [Yersinia mollaretii]
          Length = 169

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 113/164 (68%), Positives = 137/164 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DA
Sbjct: 6   DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRAGKTCAFIDA 65

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEI
Sbjct: 66  EHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEI 125

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           EG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ+RMKI
Sbjct: 126 EGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQIRMKI 169


>gi|325512815|gb|ADZ23596.1| RecA [Bradyrhizobium sp. CCBAU 45515]
          Length = 159

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 124/158 (78%), Positives = 147/158 (93%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD
Sbjct: 1   SSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG
Sbjct: 61  PVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           ++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 DALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 158


>gi|62548787|gb|AAX86845.1| RecA [Rhizobium galegae bv. orientalis]
 gi|62548789|gb|AAX86846.1| RecA [Rhizobium galegae bv. officinalis]
 gi|62548793|gb|AAX86848.1| RecA [Rhizobium galegae bv. orientalis]
          Length = 160

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 134/161 (83%), Positives = 149/161 (92%), Gaps = 1/161 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  +I E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++VID
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 160


>gi|58081977|emb|CAG29682.2| recombinase A [Propionibacterium cyclohexanicum]
          Length = 207

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 125/182 (68%), Positives = 150/182 (82%), Gaps = 1/182 (0%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS-IYARKLGV 117
              GG P+GR+VEIYGPESSGKTT+ALH IA +Q  GG CAF+DAEHALD  +   +LGV
Sbjct: 26  WAFGGLPRGRMVEIYGPESSGKTTVALHAIASAQAQGGICAFIDAEHALDPTLRLTRLGV 85

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           D   LL+SQPD GEQALEI D LVRSGA++++VIDSVAALTPRAEIEG+MG++  G+QAR
Sbjct: 86  DTDALLVSQPDNGEQALEIADTLVRSGALELLVIDSVAALTPRAEIEGEMGDNHVGLQAR 145

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           LMSQALRK+T ++  +    +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ 
Sbjct: 146 LMSQALRKMTGALQNANTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRIE 205

Query: 238 SI 239
           S+
Sbjct: 206 SL 207


>gi|328477887|gb|EGF47840.1| RecA recombinase [Lactobacillus rhamnosus MTCC 5462]
          Length = 177

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 105/174 (60%), Positives = 143/174 (82%), Gaps = 2/174 (1%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M++G +  +   I+VVS+G L LD+ALG+GG P+GRIVEIYGPESSGKTT+AL TIA+ Q
Sbjct: 1   MKMGDRPEL--KIDVVSTGILSLDLALGVGGLPRGRIVEIYGPESSGKTTIALQTIAELQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           KTGG  A++DAE+A+D  YA +LGV++ +LL+SQP++GEQ LEI +ML+ S AVD++VID
Sbjct: 59  KTGGKAAYIDAENAMDPKYAAELGVNIDDLLLSQPNSGEQGLEIAEMLIESAAVDVVVID 118

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           SVAAL P+AEIEG +G+S  G+QARLMSQALRK+  +I+ +  +++FINQ+R K
Sbjct: 119 SVAALVPKAEIEGAIGDSHVGLQARLMSQALRKMAGTINNTNTLVIFINQLREK 172


>gi|62548785|gb|AAX86844.1| RecA [Rhizobium galegae]
          Length = 160

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 135/161 (83%), Positives = 149/161 (92%), Gaps = 1/161 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  +I E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++VID
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 160


>gi|290889053|gb|ADD69876.1| recombination protein A [Sinorhizobium fredii]
 gi|290889067|gb|ADD69883.1| recombination protein A [Sinorhizobium fredii]
 gi|290889069|gb|ADD69884.1| recombination protein A [Sinorhizobium fredii]
 gi|290889071|gb|ADD69885.1| recombination protein A [Sinorhizobium fredii]
 gi|290889073|gb|ADD69886.1| recombination protein A [Sinorhizobium fredii]
 gi|290889093|gb|ADD69896.1| recombination protein A [Sinorhizobium fredii]
          Length = 157

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 132/157 (84%), Positives = 148/157 (94%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD
Sbjct: 1   STGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG
Sbjct: 61  PIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RM
Sbjct: 121 DSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRM 157


>gi|207080817|gb|ACI22752.1| RecA [Sinorhizobium sp. J3-61]
          Length = 159

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 129/158 (81%), Positives = 145/158 (91%), Gaps = 1/158 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG + SI E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL T+
Sbjct: 3   KGSVMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTV 61

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 62  AEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDV 121

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           +V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKL
Sbjct: 122 LVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKL 159


>gi|193090225|gb|ACF15284.1| recombination protein A [Bradyrhizobium sp. CCBAU 65788]
          Length = 166

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 125/167 (74%), Positives = 146/167 (87%), Gaps = 1/167 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LG        IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A+
Sbjct: 1   SVMKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V
Sbjct: 60  AQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           IDSVAAL P+AE+EG+MGESLPG+QARLM QALRKLT+SI++S  ++
Sbjct: 120 IDSVAALVPKAELEGEMGESLPGLQARLMGQALRKLTASINKSNTMV 166


>gi|124484363|dbj|BAF46292.1| DNA recombination protein RecA, chloroplast [Chlamydomonas
           reinhardtii]
          Length = 309

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 101/186 (54%), Positives = 133/186 (71%), Gaps = 3/186 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K+K     + +I R +G G+IM+L    S+   IE   SGSL LD ALG GG+P+GRI+E
Sbjct: 62  KAKLFNETVDRITRRFGDGSIMRLSD--SVTANIETFPSGSLTLDAALG-GGYPRGRIIE 118

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGPE+SGKTTLA+H  A+ Q+ GGT A++D EHA D  YA +LG++L N   +QP TGE
Sbjct: 119 VYGPEASGKTTLAMHACAEIQRLGGTVAYIDVEHAFDRTYAERLGINLNNFWYAQPMTGE 178

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           +ALE+ D L RS   D++VIDSVAAL PRAE+EGD+G    G QARL+SQALRKL++S S
Sbjct: 179 EALEVMDELCRSNVCDLVVIDSVAALVPRAELEGDIGSVQIGSQARLLSQALRKLSASAS 238

Query: 192 RSKCIL 197
           +S+   
Sbjct: 239 KSRPPC 244


>gi|33087813|gb|AAP93037.1| recombination protein A [Yersinia frederiksenii ATCC 33641]
 gi|33087861|gb|AAP93061.1| recombination protein A [Yersinia mollaretii]
          Length = 164

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 110/166 (66%), Positives = 134/166 (80%), Gaps = 2/166 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I
Sbjct: 59  AAQRAGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVI 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           ++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  
Sbjct: 119 IVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANT 164


>gi|51235257|gb|AAT98473.1| recombination protein A [Rhizobium huautlense]
          Length = 160

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 133/161 (82%), Positives = 147/161 (91%), Gaps = 1/161 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  +I E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSSENIVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SVAALTPRAEIEG+MG+SLP  QARLMSQALRKLT+SIS+S
Sbjct: 120 SVAALTPRAEIEGEMGDSLPASQARLMSQALRKLTASISKS 160


>gi|51235253|gb|AAT98471.1| recombination protein A [Rhizobium huautlense]
 gi|51235255|gb|AAT98472.1| recombination protein A [Rhizobium huautlense]
          Length = 160

 Score =  170 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 134/161 (83%), Positives = 149/161 (92%), Gaps = 1/161 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  +I E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSSENIVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 160


>gi|207080825|gb|ACI22756.1| RecA [Sinorhizobium sp. J3-42]
          Length = 157

 Score =  170 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 129/158 (81%), Positives = 145/158 (91%), Gaps = 1/158 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG + SI E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL T+
Sbjct: 1   KGSVMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTV 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 60  AEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           +V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKL
Sbjct: 120 LVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKL 157


>gi|5002563|emb|CAB44333.1| RecA protein [Frankia alni]
          Length = 186

 Score =  170 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 134/185 (72%), Positives = 158/185 (85%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ALHT+A +Q  GG  AF+DAEHALD  YA KLGVD+ NLL+SQPDTGEQALEI
Sbjct: 2   SSGKTTVALHTVANAQAAGGITAFIDAEHALDPEYAGKLGVDIDNLLVSQPDTGEQALEI 61

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T++++ S   
Sbjct: 62  ADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTAALANSGTT 121

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
            +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+TRVKVVK
Sbjct: 122 AIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTEAVGNRTRVKVVK 181

Query: 257 NKMAS 261
           NK+A 
Sbjct: 182 NKVAP 186


>gi|213012348|gb|ACJ38740.1| recombination-repair protein [Vibrio rotiferianus]
          Length = 189

 Score =  170 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 129/188 (68%), Positives = 163/188 (86%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSG
Sbjct: 1   LELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+R
Sbjct: 61  AIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIR 120

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK
Sbjct: 121 MKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFK 180

Query: 265 QVEFDIMY 272
           +    IMY
Sbjct: 181 EANTQIMY 188


>gi|325651011|emb|CBY89327.1| RecA protein [Bradyrhizobium japonicum]
          Length = 156

 Score =  170 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 117/157 (74%), Positives = 139/157 (88%), Gaps = 1/157 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQAL
Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQAL 156


>gi|207080805|gb|ACI22746.1| RecA [Rhizobium sp. J3-51]
          Length = 160

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 127/158 (80%), Positives = 144/158 (91%), Gaps = 1/158 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG+   I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TI
Sbjct: 4   KGSVMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 62

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 63  AEAQKKGGVCAFVDAEHALDPVYARKLGVDLQGLLISQPDTGEQALEITDTLVRSGAIDV 122

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           +VIDSVAALTP+AEIEG+MG+SLPGMQARLMSQALRKL
Sbjct: 123 LVIDSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKL 160


>gi|326328142|gb|ADZ54138.1| recombination protein A [Bradyrhizobium sp. CCBAU 15768]
          Length = 158

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 124/158 (78%), Positives = 147/158 (93%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD 
Sbjct: 1   SGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG+
Sbjct: 61  VYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 ALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 158


>gi|222544089|gb|ACM66905.1| recombinase A [Sinorhizobium sp. CCNWGS114]
          Length = 145

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 115/146 (78%), Positives = 132/146 (90%), Gaps = 1/146 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG+IM+LGS+ S+ E IE + +GSLGLDIALGIGG PKGRI+EIYGPESSGKTT
Sbjct: 1   IERAFGKGSIMKLGSKDSVVE-IETIPTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPD GEQALEITD LVR
Sbjct: 60  LALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDNGEQALEITDALVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMG 168
           SGA+D++VIDSVAALTPRAEIEG+MG
Sbjct: 120 SGAIDVLVIDSVAALTPRAEIEGEMG 145


>gi|33087851|gb|AAP93056.1| recombination protein A [Yersinia kristensenii]
          Length = 164

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 110/166 (66%), Positives = 134/166 (80%), Gaps = 2/166 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA
Sbjct: 1   GSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I
Sbjct: 59  AAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVI 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           ++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  
Sbjct: 119 IVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANT 164


>gi|62548783|gb|AAX86843.1| RecA [Rhizobium galegae]
 gi|62548791|gb|AAX86847.1| RecA [Rhizobium galegae]
          Length = 160

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 135/161 (83%), Positives = 149/161 (92%), Gaps = 1/161 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG+  SI E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGANESIVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++VID
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 160


>gi|213012360|gb|ACJ38746.1| recombination-repair protein [Vibrio chagasii]
          Length = 188

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 132/188 (70%), Positives = 161/188 (85%)

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA +QK G T  F DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA
Sbjct: 1   ELIAAAQKVGKTWCFRDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGA 60

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RM
Sbjct: 61  IDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRM 120

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           KIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ
Sbjct: 121 KIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQ 180

Query: 266 VEFDIMYG 273
            E  I+YG
Sbjct: 181 AETQILYG 188


>gi|222544081|gb|ACM66901.1| recombinase A [Sinorhizobium xinjiangense]
          Length = 145

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 118/146 (80%), Positives = 133/146 (91%), Gaps = 1/146 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTT
Sbjct: 1   IERAFGKGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVR
Sbjct: 60  LALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMG 168
           SGA+D++V+DSVAAL PRAEIEG+MG
Sbjct: 120 SGAIDVLVVDSVAALVPRAEIEGEMG 145


>gi|290889057|gb|ADD69878.1| recombination protein A [Bradyrhizobium elkanii]
 gi|290889089|gb|ADD69894.1| recombination protein A [Bradyrhizobium elkanii]
 gi|290889091|gb|ADD69895.1| recombination protein A [Bradyrhizobium elkanii]
          Length = 157

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 121/157 (77%), Positives = 145/157 (92%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD
Sbjct: 1   SSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG
Sbjct: 61  PVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           ++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RM
Sbjct: 121 DALPGLQARLMSQALRKLTASINKSHTMVIFINQIRM 157


>gi|290889051|gb|ADD69875.1| recombination protein A [Bradyrhizobium japonicum]
          Length = 157

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 122/157 (77%), Positives = 146/157 (92%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD
Sbjct: 1   SSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG
Sbjct: 61  PVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           ++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RM
Sbjct: 121 DALPGLQARLMSQALRKLTASINKSHTMVIFINQIRM 157


>gi|194476421|gb|ACF74775.1| RecA [Rhizobium multihospitium]
          Length = 168

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 132/164 (80%), Positives = 150/164 (91%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE      L LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 2   IERFPPAPLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIE
Sbjct: 62  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIE 121

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIG
Sbjct: 122 GEMGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 165


>gi|158147295|gb|ABW22701.1| recA [Rhizobium sp. CCBAU 83718]
          Length = 156

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 130/156 (83%), Positives = 148/156 (94%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +
Sbjct: 1   GSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPV 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+S
Sbjct: 61  YARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDS 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           LPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 121 LPGLQARLMSQALRKLTASISKSNCMVIFINQIRMK 156


>gi|290889087|gb|ADD69893.1| recombination protein A [Bradyrhizobium yuanmingense]
          Length = 157

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 123/157 (78%), Positives = 146/157 (92%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD
Sbjct: 1   SSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG
Sbjct: 61  PVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           ++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RM
Sbjct: 121 DALPGLQARLMSQALRKLTASINKSNTMVIFINQIRM 157


>gi|325512827|gb|ADZ23602.1| RecA [Sinorhizobium sp. CCBAU 051127]
          Length = 158

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 130/158 (82%), Positives = 147/158 (93%), Gaps = 1/158 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A++Q
Sbjct: 1   MKLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           SVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SI
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASI 157


>gi|33087867|gb|AAP93064.1| recombination protein A [Yersinia mollaretii]
          Length = 159

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 109/159 (68%), Positives = 132/159 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DA
Sbjct: 1   DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRAGKTCAFIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEI
Sbjct: 61  EHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           EG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ
Sbjct: 121 EGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQ 159


>gi|33087791|gb|AAP93026.1| recombination protein A [Yersinia bercovieri]
          Length = 142

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 101/144 (70%), Positives = 119/144 (82%), Gaps = 2/144 (1%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           L QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSG
Sbjct: 1   LGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 58

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D 
Sbjct: 59  KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDA 118

Query: 140 LVRSGAVDIIVIDSVAALTPRAEI 163
           L RSGAVD+I++DSVAALTP+AEI
Sbjct: 119 LTRSGAVDVIIVDSVAALTPKAEI 142


>gi|117667660|gb|ABK55876.1| recombinase A [Streptomyces cirratus]
 gi|117667670|gb|ABK55881.1| recombinase A [Streptomyces subrutilus]
 gi|117667698|gb|ABK55895.1| recombinase A [Streptomyces nojiriensis]
 gi|117667702|gb|ABK55897.1| recombinase A [Streptomyces spororaveus]
 gi|220961080|gb|ACL93006.1| recombinase A [Streptomyces albidoflavus]
          Length = 168

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 125/168 (74%), Positives = 147/168 (87%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           DIALG+GG P+GR++E+YGPESSGKTTL LH +A +QK GGT AFVDAEHALD  YA+ L
Sbjct: 1   DIALGVGGLPRGRVIEVYGPESSGKTTLTLHAVANAQKAGGTVAFVDAEHALDPEYAKAL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD  NL++SQPDTGEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDNLILSQPDTGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+T ++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITGALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|114155640|dbj|BAF31006.1| recombinase A [Agrobacterium vitis]
 gi|114155642|dbj|BAF31007.1| recombinase A [Agrobacterium vitis]
 gi|114155644|dbj|BAF31008.1| recombinase A [Agrobacterium vitis]
 gi|114155646|dbj|BAF31009.1| recombinase A [Agrobacterium vitis]
 gi|114155648|dbj|BAF31010.1| recombinase A [Agrobacterium vitis]
 gi|114155650|dbj|BAF31011.1| recombinase A [Agrobacterium vitis]
 gi|114155652|dbj|BAF31012.1| recombinase A [Agrobacterium vitis]
 gi|114155654|dbj|BAF31013.1| recombinase A [Agrobacterium vitis]
 gi|114155656|dbj|BAF31014.1| recombinase A [Agrobacterium vitis]
 gi|114155658|dbj|BAF31015.1| recombinase A [Agrobacterium vitis]
 gi|114155660|dbj|BAF31016.1| recombinase A [Agrobacterium vitis]
 gi|118562881|dbj|BAF37808.1| recombinase A [Agrobacterium vitis]
 gi|118562883|dbj|BAF37809.1| recombinase A [Agrobacterium vitis]
 gi|160358241|dbj|BAF93441.1| recombinase A [Agrobacterium vitis]
 gi|160358243|dbj|BAF93442.1| recombinase A [Agrobacterium vitis]
 gi|301601044|dbj|BAJ13211.1| RecA [Agrobacterium vitis]
 gi|301601046|dbj|BAJ13212.1| RecA [Agrobacterium vitis]
 gi|301601048|dbj|BAJ13213.1| RecA [Agrobacterium vitis]
 gi|301601050|dbj|BAJ13214.1| RecA [Agrobacterium vitis]
 gi|301601052|dbj|BAJ13215.1| RecA [Agrobacterium vitis]
 gi|301601054|dbj|BAJ13216.1| RecA [Agrobacterium vitis]
 gi|301601071|dbj|BAJ13224.1| RecA [Agrobacterium vitis]
 gi|301601073|dbj|BAJ13225.1| RecA [Agrobacterium vitis]
          Length = 160

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 132/161 (81%), Positives = 147/161 (91%), Gaps = 1/161 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG+   I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++
Sbjct: 1   IMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEA 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VI
Sbjct: 60  QKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVI 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           DSVAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT SISR
Sbjct: 120 DSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKLTGSISR 160


>gi|298566924|gb|ADI86538.1| recombination protein A [Bradyrhizobium elkanii]
          Length = 158

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 121/157 (77%), Positives = 145/157 (92%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD 
Sbjct: 1   SGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG+
Sbjct: 61  VYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           +LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 ALPGLQARLMSQALRKLTASINKSHTMVIFINQIRMK 157


>gi|213012340|gb|ACJ38736.1| recombination-repair protein [Vibrio mediterranei]
          Length = 181

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 130/181 (71%), Positives = 161/181 (88%)

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K G TCAF+DAEHALD IYA+KLGVD+ +LL+SQPDTGEQALEI D L RSGA+D++V+D
Sbjct: 1   KQGKTCAFIDAEHALDPIYAKKLGVDIDSLLVSQPDTGEQALEICDALARSGAIDVMVVD 60

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG
Sbjct: 61  SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFG 120

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           +PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E  I+Y
Sbjct: 121 NPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQILY 180

Query: 273 G 273
           G
Sbjct: 181 G 181


>gi|306569707|gb|ADN03348.1| RecA [Bradyrhizobium yuanmingense]
          Length = 155

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 121/155 (78%), Positives = 144/155 (92%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD
Sbjct: 1   SSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG
Sbjct: 61  PVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           ++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 121 DALPGLQARLMSQALRKLTASINKSNTMVIFINQI 155


>gi|163960887|gb|ABY49988.1| recombination protein A [Bradyrhizobium sp. CCBAU 85059]
          Length = 158

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 117/156 (75%), Positives = 141/156 (90%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IEV+SSGSLGLDIALG+GG PKGR++EIYGPESSGKTTLALH  A++QK GG CAF+DA
Sbjct: 3   DIEVISSGSLGLDIALGVGGLPKGRVIEIYGPESSGKTTLALHCAAEAQKKGGICAFIDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGV++  LLISQPD GEQALEI D LVRSGAVD+++IDSVAAL PRAE+
Sbjct: 63  EHALDPVYARKLGVNVDELLISQPDHGEQALEIADTLVRSGAVDVLIIDSVAALVPRAEL 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           EG+MG++LPG+QARLMSQALRKLT+SI++S  +++F
Sbjct: 123 EGEMGDALPGLQARLMSQALRKLTASINKSNTMVIF 158


>gi|299737714|gb|ADJ37180.1| recombinase A [Bradyrhizobium sp. CCBAU 25374]
 gi|299737716|gb|ADJ37181.1| recombinase A [Bradyrhizobium sp. CCBAU 25360]
          Length = 157

 Score =  168 bits (426), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 124/157 (78%), Positives = 146/157 (92%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD
Sbjct: 1   SSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG
Sbjct: 61  PVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           ++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RM
Sbjct: 121 DALPGLQARLMSQALRKLTASINKSNTMVIFINQIRM 157


>gi|213950710|gb|ACJ54600.1| recombination protein A [Sinorhizobium fredii]
          Length = 149

 Score =  168 bits (426), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 122/149 (81%), Positives = 137/149 (91%), Gaps = 1/149 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL 
Sbjct: 2   FGKGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQ 60

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+
Sbjct: 61  TIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAI 120

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           D++V+DSVAAL PRAEIEG+MG+SLPGMQ
Sbjct: 121 DVLVVDSVAALVPRAEIEGEMGDSLPGMQ 149


>gi|298566890|gb|ADI86521.1| recombination protein A [Sinorhizobium fredii]
          Length = 158

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 125/158 (79%), Positives = 147/158 (93%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD 
Sbjct: 1   SGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG+
Sbjct: 61  VYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELEGEMGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 ALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 158


>gi|290889059|gb|ADD69879.1| recombination protein A [Bradyrhizobium japonicum]
 gi|290889061|gb|ADD69880.1| recombination protein A [Bradyrhizobium japonicum]
 gi|290889081|gb|ADD69890.1| recombination protein A [Bradyrhizobium japonicum]
          Length = 157

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 122/157 (77%), Positives = 146/157 (92%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD
Sbjct: 1   SSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG
Sbjct: 61  PVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           ++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RM
Sbjct: 121 DALPGLQARLMSQALRKLTASINKSNTMVIFINQIRM 157


>gi|117667638|gb|ABK55865.1| recombinase A [Streptomyces virginiae]
          Length = 168

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 126/168 (75%), Positives = 147/168 (87%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           DIALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GGT AFVDAEHALD  YA+ L
Sbjct: 1   DIALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGTVAFVDAEHALDPEYAKAL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD  NL++SQPDTGEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDNLILSQPDTGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+T ++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITGALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|57116486|gb|AAW33734.1| recombinase A [Candidatus Regiella insecticola]
          Length = 185

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 129/185 (69%), Positives = 160/185 (86%)

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPD G
Sbjct: 1   EIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDNG 60

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG+MG++  G+ AR+MS+A+RK   ++
Sbjct: 61  EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEMGDAHMGLAARMMSKAMRKFAGNL 120

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           + +  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ + + G++T
Sbjct: 121 NNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKNGEEVIGSET 180

Query: 251 RVKVV 255
           RVKVV
Sbjct: 181 RVKVV 185


>gi|298566912|gb|ADI86532.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|298566920|gb|ADI86536.1| recombination protein A [Bradyrhizobium sp. CCBAU 05588]
 gi|298566922|gb|ADI86537.1| recombination protein A [Bradyrhizobium yuanmingense]
          Length = 158

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 123/157 (78%), Positives = 146/157 (92%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD 
Sbjct: 1   SGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG+
Sbjct: 61  VYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           +LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 ALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 157


>gi|33087855|gb|AAP93058.1| recombination protein A [Yersinia mollaretii]
          Length = 161

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 109/159 (68%), Positives = 132/159 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DA
Sbjct: 3   DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRAGKTCAFIDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEI
Sbjct: 63  EHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           EG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ
Sbjct: 123 EGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQ 161


>gi|33087783|gb|AAP93022.1| recombination protein A [Yersinia aldovae]
 gi|33087823|gb|AAP93042.1| recombination protein A [Yersinia intermedia]
          Length = 159

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 109/159 (68%), Positives = 132/159 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DA
Sbjct: 1   DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIASAQREGKTCAFIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEI
Sbjct: 61  EHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           EG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ
Sbjct: 121 EGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQ 159


>gi|301601069|dbj|BAJ13223.1| RecA [Agrobacterium vitis]
          Length = 160

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 130/160 (81%), Positives = 145/160 (90%), Gaps = 1/160 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG+   I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++
Sbjct: 1   IMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEA 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VI
Sbjct: 60  QKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVI 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           DSVAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT SI 
Sbjct: 120 DSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKLTGSIP 159


>gi|222544087|gb|ACM66904.1| recombinase A [Sinorhizobium meliloti]
          Length = 145

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 117/146 (80%), Positives = 133/146 (91%), Gaps = 1/146 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTT
Sbjct: 1   IERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           LAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVR
Sbjct: 60  LALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVR 119

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMG 168
           SGA+DI+VIDSVAAL PRAEIEG+MG
Sbjct: 120 SGAIDILVIDSVAALVPRAEIEGEMG 145


>gi|325512769|gb|ADZ23573.1| RecA [Bradyrhizobium elkanii]
          Length = 157

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 121/157 (77%), Positives = 145/157 (92%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +
Sbjct: 1   GSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPV 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++
Sbjct: 61  YARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDA 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 LPGLQARLMSQALRKLTASINKSHTMVIFINQIRMKI 157


>gi|298566914|gb|ADI86533.1| recombination protein A [Bradyrhizobium yuanmingense]
          Length = 157

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 123/157 (78%), Positives = 146/157 (92%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD 
Sbjct: 1   SGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG+
Sbjct: 61  VYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           +LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 ALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 157


>gi|163960890|gb|ABY49989.1| recombination protein A [Sinorhizobium meliloti]
          Length = 158

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 131/156 (83%), Positives = 145/156 (92%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDA
Sbjct: 3   EIETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VIDSVAAL PRAEI
Sbjct: 63  EHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVIDSVAALVPRAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           EG+MG+SLPGMQARLMSQALRKLT+SIS+S C+++F
Sbjct: 123 EGEMGDSLPGMQARLMSQALRKLTASISKSNCMVIF 158


>gi|306569711|gb|ADN03350.1| RecA [Bradyrhizobium liaoningense]
          Length = 155

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 122/155 (78%), Positives = 144/155 (92%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD
Sbjct: 1   SSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG
Sbjct: 61  PVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           ++LPG+QARLMSQALRKLT+SI++S  +++FINQ+
Sbjct: 121 DALPGLQARLMSQALRKLTASINKSNTMVIFINQI 155


>gi|199595030|gb|ACH90979.1| RecA [Stenotrophomonas maltophilia]
 gi|199595068|gb|ACH90998.1| RecA [Stenotrophomonas maltophilia]
 gi|199595074|gb|ACH91001.1| RecA [Stenotrophomonas maltophilia]
 gi|199595076|gb|ACH91002.1| RecA [Stenotrophomonas maltophilia]
 gi|199595078|gb|ACH91003.1| RecA [Stenotrophomonas maltophilia]
 gi|301318396|gb|ADK67113.1| RecA protein [Stenotrophomonas rhizophila]
 gi|301318418|gb|ADK67124.1| RecA protein [Stenotrophomonas maltophilia]
 gi|301318430|gb|ADK67130.1| RecA protein [Stenotrophomonas maltophilia]
 gi|301318432|gb|ADK67131.1| RecA protein [Stenotrophomonas maltophilia]
          Length = 182

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 135/182 (74%), Positives = 156/182 (85%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +EV+ +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EAVEVIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKKGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRS +VDI+V+DSVAALTP+AE
Sbjct: 61  AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSSSVDIVVVDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS  ++VFINQ+R KIGVM    SPE TTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRHKIGVMMPGQSPEVTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|325651055|emb|CBY89349.1| RecA protein [Bradyrhizobium sp. R-46212=t426]
          Length = 174

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 117/157 (74%), Positives = 138/157 (87%), Gaps = 1/157 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           D++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQA+
Sbjct: 120 DVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQAV 156


>gi|329666354|gb|AEB96228.1| recombinase A [Rhizobium sp. CCNWSX0878]
 gi|329666356|gb|AEB96229.1| recombinase A [Rhizobium sp. CCNWSX0879]
 gi|329666358|gb|AEB96230.1| recombinase A [Rhizobium sp. CCNWSX0884]
 gi|329666360|gb|AEB96231.1| recombinase A [Rhizobium sp. CCNWSX0887]
          Length = 141

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 113/142 (79%), Positives = 131/142 (92%), Gaps = 1/142 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL 
Sbjct: 1   FGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAV
Sbjct: 60  TIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMG 168
           D++V+DSVAALTPRAEIEG+MG
Sbjct: 120 DVLVVDSVAALTPRAEIEGEMG 141


>gi|299737726|gb|ADJ37186.1| recombinase A [Bradyrhizobium sp. CCBAU 051011]
          Length = 159

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 122/159 (76%), Positives = 147/159 (92%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD 
Sbjct: 1   SGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YARKLGV++  LLISQPDTGEQALEI D LVRSGA+D++V+DSVAAL P+AE+EG+MG+
Sbjct: 61  VYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALVPKAELEGEMGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIG
Sbjct: 121 ALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIG 159


>gi|301601056|dbj|BAJ13217.1| RecA [Agrobacterium vitis]
          Length = 160

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 130/160 (81%), Positives = 145/160 (90%), Gaps = 1/160 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG+   I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++
Sbjct: 1   IMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEA 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VI
Sbjct: 60  QKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVI 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           DSVAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT SI 
Sbjct: 120 DSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKLTGSIR 159


>gi|301601079|dbj|BAJ13228.1| RecA [Agrobacterium vitis]
          Length = 160

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 130/159 (81%), Positives = 145/159 (91%), Gaps = 1/159 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG+   I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++
Sbjct: 1   IMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEA 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VI
Sbjct: 60  QKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVI 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           DSVAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT SI
Sbjct: 120 DSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKLTGSI 158


>gi|330369296|gb|AEC12038.1| recombination protein A [Bradyrhizobium sp. CCBAU 45502]
          Length = 157

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 123/157 (78%), Positives = 146/157 (92%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +
Sbjct: 1   GSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPV 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++
Sbjct: 61  YARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDA 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 LPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 157


>gi|325551426|gb|ADZ28554.1| recombinase A [Streptomyces cinnamoneus]
          Length = 168

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 128/168 (76%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VEIYGPESSGKTTL LH +A +QK GGT AFVDAEHALD  YAR L
Sbjct: 1   DVALGVGGLPRGRVVEIYGPESSGKTTLTLHAVANAQKAGGTVAFVDAEHALDPEYARAL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD  NL++SQPDTGEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDNLILSQPDTGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|298566918|gb|ADI86535.1| recombination protein A [Bradyrhizobium japonicum]
          Length = 158

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 124/157 (78%), Positives = 146/157 (92%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD 
Sbjct: 1   SGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG+
Sbjct: 61  VYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           +LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 ALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 157


>gi|253509208|gb|ACT31904.1| recombinase A [Rhizobium sp. CCNWGS0178]
          Length = 145

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 118/146 (80%), Positives = 133/146 (91%), Gaps = 1/146 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG + SI E IE + +GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL 
Sbjct: 1   FGKGSIMKLGGKDSIVE-IETIPTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG CAFVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+
Sbjct: 60  TIAEAQKKGGICAFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAL 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLP 172
           D++VIDSVAALTPRAEIEG+MG+SLP
Sbjct: 120 DVLVIDSVAALTPRAEIEGEMGDSLP 145


>gi|325512821|gb|ADZ23599.1| RecA [Sinorhizobium fredii]
          Length = 160

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 134/161 (83%), Positives = 149/161 (92%), Gaps = 1/161 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           SVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 160


>gi|325651041|emb|CBY89342.1| RecA protein [Bradyrhizobium sp. R-45743=1532]
          Length = 153

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 116/154 (75%), Positives = 136/154 (88%), Gaps = 1/154 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           D++V+DSVAAL P+AE+EG+MGESLPG+QARLMS
Sbjct: 120 DVLVVDSVAALVPKAELEGEMGESLPGLQARLMS 153


>gi|220961050|gb|ACL92991.1| recombinase A [Streptomyces griseoverticillatus]
 gi|220961060|gb|ACL92996.1| recombinase A [Streptomyces cinnamoneus]
          Length = 168

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 127/168 (75%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GGT AFVDAEHALD  YAR L
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGTVAFVDAEHALDPEYARAL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD  NL++SQPDTGEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDNLILSQPDTGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|117667646|gb|ABK55869.1| recombinase A [Streptomyces cremeus]
 gi|117667666|gb|ABK55879.1| recombinase A [Streptomyces spiroverticillatus]
          Length = 168

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 127/168 (75%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           DIALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GGT AFVDAEHALD  YA+ L
Sbjct: 1   DIALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGTVAFVDAEHALDPEYAKAL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD  NL++SQPDTGEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDNLILSQPDTGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|298566926|gb|ADI86539.1| recombination protein A [Bradyrhizobium japonicum]
          Length = 158

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 122/157 (77%), Positives = 146/157 (92%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD 
Sbjct: 1   SGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG+
Sbjct: 61  VYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           +LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 ALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 157


>gi|213012342|gb|ACJ38737.1| recombination-repair protein [Vibrio rotiferianus]
          Length = 182

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 127/182 (69%), Positives = 160/182 (87%)

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+
Sbjct: 1   QREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVV 60

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMF
Sbjct: 61  DSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMF 120

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           G+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IM
Sbjct: 121 GNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIM 180

Query: 272 YG 273
           YG
Sbjct: 181 YG 182


>gi|299737696|gb|ADJ37171.1| recombinase A [Bradyrhizobium liaoningense]
 gi|299737698|gb|ADJ37172.1| recombinase A [Bradyrhizobium liaoningense]
          Length = 157

 Score =  168 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 124/157 (78%), Positives = 146/157 (92%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD 
Sbjct: 1   SGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG+
Sbjct: 61  VYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           +LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 ALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 157


>gi|156564016|ref|YP_001429755.1| RecA [Bacillus phage 0305phi8-36]
 gi|154622713|gb|ABS83593.1| RecA [Bacillus phage 0305phi8-36]
          Length = 457

 Score =  168 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 115/397 (28%), Positives = 200/397 (50%), Gaps = 45/397 (11%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
            K++   +K K     +  I +  G  A+   G    + + +  + + S  +++  G GG
Sbjct: 16  DKKLTKEEKRKIAMKLMDGINKTAGSTAV---GFAKDVAKKLTFLPTPSEEINVMTG-GG 71

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIA--QSQKTGGTCAFVDAEHALDSIYARKL-GVDLK 120
            P+GRI EI+G  SSGKT+L L TI     Q      A++++E + D  YAR + G+DL 
Sbjct: 72  IPRGRITEIFGNNSSGKTSLCLETIGEDMEQDPDALWAWLESEESFDPDYARDVHGIDLD 131

Query: 121 NLLISQP--DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
            L+         E++++  ++L+RSG +   V++SVA L P+ E+E D+ +S   +QAR+
Sbjct: 132 RLIYVDISLKGAEESIDRLEVLMRSGILSGFVVNSVAGLVPKREVETDLAQSDIALQARM 191

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MS+ +RK T+ I +     +FINQ+R  +   FG P  TTGG AL FY+S+R  + ++  
Sbjct: 192 MSKLMRKWTALIGKKDLYAIFINQLRTDVNSRFGDPNVTTGGRALAFYASLRFGMNKL-K 250

Query: 239 IKDKDSIT---GNQTRVKVVKNKMA--SPFKQVEFDIMYGEGISFFGELIDLGVKASIVD 293
           ++D D IT   G +   +V KN+    +P+K+ E+ ++YGEG+    E+++    A I+ 
Sbjct: 251 LQDSDPITDDDGLKISARVAKNRCVYDNPYKKCEYYVIYGEGVDKLTEIMENVEPAGIMR 310

Query: 294 KSGAWFSFKGQRLGQ---------------------------GRENSKIFLRENIEIAEN 326
           KSG+WF ++ +   Q                           G+   + F+ +N   AE 
Sbjct: 311 KSGSWFYYEKEDGEQIEAAEALVRKKDDPVPQMAKNVPLKFPGKTKFREFMTDNPWFAEQ 370

Query: 327 IESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           +   +R   G V    L     +  +  D ++ + +E
Sbjct: 371 LRQEIR---GKVKQGELLPKYQDADEMKDIEELEKIE 404


>gi|330369298|gb|AEC12039.1| recombination protein A [Bradyrhizobium sp. CCBAU 23332]
          Length = 158

 Score =  168 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 124/158 (78%), Positives = 147/158 (93%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +
Sbjct: 1   GSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPV 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++
Sbjct: 61  YARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDA 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIG
Sbjct: 121 LPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIG 158


>gi|220960974|gb|ACL92953.1| recombinase A [Streptomyces niger]
          Length = 168

 Score =  168 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 122/168 (72%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GGT AFVDAEHALD  YA++L
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGTVAFVDAEHALDPEYAKRL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+  L++SQPD GEQALEITDML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDVDQLILSQPDNGEQALEITDMLIRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+T ++++SK   +FINQ+R K+GVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITGALNQSKTTAIFINQLREKVGVMFGSPETTTGGRAL 168


>gi|325512803|gb|ADZ23590.1| RecA [Sinorhizobium fredii]
          Length = 160

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 136/160 (85%), Positives = 151/160 (94%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD I
Sbjct: 1   GSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPI 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+S
Sbjct: 61  YARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDS 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           LPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 121 LPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 160


>gi|167508767|gb|ABZ81588.1| recombinase A [Bradyrhizobium elkanii]
          Length = 162

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 120/163 (73%), Positives = 142/163 (87%), Gaps = 1/163 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG        +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ Q
Sbjct: 1   MKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+D
Sbjct: 60  KKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           SVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  
Sbjct: 120 SVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSHT 162


>gi|325512779|gb|ADZ23578.1| RecA [Bradyrhizobium japonicum]
          Length = 157

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 122/157 (77%), Positives = 146/157 (92%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +
Sbjct: 1   GSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPV 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++
Sbjct: 61  YARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDA 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 LPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 157


>gi|253509212|gb|ACT31906.1| recombinase A [Rhizobium sp. CCNWGS0238]
 gi|309754584|gb|ADO86934.1| RecA [Rhizobium sp. CCNWQTX20]
          Length = 145

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 118/146 (80%), Positives = 133/146 (91%), Gaps = 1/146 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG + SI E IE + +GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL 
Sbjct: 1   FGKGSIMKLGGKDSIVE-IETIPTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG CAFVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+
Sbjct: 60  TIAEAQKKGGICAFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLP 172
           D++VIDSVAALTPRAEIEG+MG+SLP
Sbjct: 120 DVLVIDSVAALTPRAEIEGEMGDSLP 145


>gi|220961014|gb|ACL92973.1| recombinase A [Streptomyces abikoensis]
 gi|220961016|gb|ACL92974.1| recombinase A [Streptomyces ehimensis]
 gi|220961038|gb|ACL92985.1| recombinase A [Streptomyces luteoverticillatus]
          Length = 168

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 127/168 (75%), Positives = 149/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VEIYGPESSGKTTL LH +A +Q+ GGT AFVDAEHALD  YARKL
Sbjct: 1   DVALGVGGLPRGRVVEIYGPESSGKTTLTLHAVANAQRAGGTVAFVDAEHALDPEYARKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|325650997|emb|CBY89320.1| RecA protein [Bradyrhizobium japonicum]
 gi|325650999|emb|CBY89321.1| RecA protein [Bradyrhizobium japonicum]
 gi|325651003|emb|CBY89323.1| RecA protein [Bradyrhizobium japonicum]
 gi|325651005|emb|CBY89324.1| RecA protein [Bradyrhizobium japonicum]
 gi|325651007|emb|CBY89325.1| RecA protein [Bradyrhizobium japonicum]
 gi|325651009|emb|CBY89326.1| RecA protein [Bradyrhizobium japonicum]
 gi|325651013|emb|CBY89328.1| RecA protein [Bradyrhizobium japonicum]
 gi|325651021|emb|CBY89332.1| RecA protein [Bradyrhizobium japonicum]
 gi|325651037|emb|CBY89340.1| RecA protein [Bradyrhizobium japonicum]
          Length = 153

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 114/154 (74%), Positives = 136/154 (88%), Gaps = 1/154 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           D++V+DSVAAL P+AE+EG+MG++LPG+QARLMS
Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMS 153


>gi|117667644|gb|ABK55868.1| recombinase A [Streptomyces bobili]
          Length = 168

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 126/168 (75%), Positives = 149/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR++E+YGPESSGKTTL LH +A +QK GGT AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVIEVYGPESSGKTTLTLHAVANAQKAGGTVAFVDAEHALDPEYAQKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NLL+SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLLLSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|199595018|gb|ACH90973.1| RecA [Stenotrophomonas maltophilia]
 gi|301318424|gb|ADK67127.1| RecA protein [Stenotrophomonas maltophilia]
          Length = 182

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 136/182 (74%), Positives = 157/182 (86%), Gaps = 2/182 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +EV+ +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L  IA+ QK GGT AF+D
Sbjct: 1   EAVEVIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKKGGTAAFID 60

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRS +VDI+V+DSVAALTP+AE
Sbjct: 61  AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSSSVDIVVVDSVAALTPKAE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220
           IEG+MG+ LPG+QARLMSQALRKLT +I RS  ++VFINQ+RMKIGVM    SPE TTGG
Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPEVTTGG 180

Query: 221 NA 222
           NA
Sbjct: 181 NA 182


>gi|33087881|gb|AAP93071.1| recombination protein A [Yersinia ruckeri]
          Length = 165

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 111/167 (66%), Positives = 135/167 (80%), Gaps = 2/167 (1%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
           G   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G
Sbjct: 1   GEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIASAQREG 58

Query: 96  GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
            TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVA
Sbjct: 59  KTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVA 118

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           ALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ
Sbjct: 119 ALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQ 165


>gi|253509210|gb|ACT31905.1| recombinase A [Rhizobium sp. CCNWGS0187]
          Length = 145

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 117/146 (80%), Positives = 133/146 (91%), Gaps = 1/146 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG + SI E IE + +GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL 
Sbjct: 1   FGKGSIMKLGGKDSIVE-IETIPTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG CAFVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEI+D LVRSGA+
Sbjct: 60  TIAEAQKKGGICAFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEISDTLVRSGAI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLP 172
           D++VIDSVAALTPRAEIEG+MG+SLP
Sbjct: 120 DVLVIDSVAALTPRAEIEGEMGDSLP 145


>gi|325651015|emb|CBY89329.1| RecA protein [Bradyrhizobium japonicum]
          Length = 155

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 114/154 (74%), Positives = 136/154 (88%), Gaps = 1/154 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH
Sbjct: 3   FGKGSVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 61

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 62  TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 121

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           D++V+DSVAAL P+AE+EG+MG++LPG+QARLMS
Sbjct: 122 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMS 155


>gi|220961036|gb|ACL92984.1| recombinase A [Streptomyces hiroshimensis]
          Length = 168

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 125/168 (74%), Positives = 149/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GGT AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQRAGGTVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|167508759|gb|ABZ81584.1| recombinase A [Bradyrhizobium japonicum]
          Length = 162

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 121/163 (74%), Positives = 143/163 (87%), Gaps = 1/163 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++Q
Sbjct: 1   MKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+D
Sbjct: 60  KKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           SVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  
Sbjct: 120 SVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSHT 162


>gi|220961008|gb|ACL92970.1| recombinase A [Streptomyces aureoversilis]
 gi|220961026|gb|ACL92979.1| recombinase A [Streptomyces rectiverticillatus]
          Length = 168

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 126/168 (75%), Positives = 149/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VEIYGPESSGKTTL LH +A +Q+ GGT AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEIYGPESSGKTTLTLHAVANAQRAGGTVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|220961048|gb|ACL92990.1| recombinase A [Streptomyces mashuensis]
          Length = 168

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 122/168 (72%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GGT AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQRAGGTVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ +L++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDSLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+T ++++SK   +FINQ+R K+GVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITGALNQSKTTAIFINQLREKVGVMFGSPETTTGGRAL 168


>gi|269214650|ref|ZP_06158716.1| RecA protein [Neisseria lactamica ATCC 23970]
 gi|269209311|gb|EEZ75766.1| RecA protein [Neisseria lactamica ATCC 23970]
          Length = 152

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 89/154 (57%), Positives = 121/154 (78%), Gaps = 2/154 (1%)

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGVMFGSPETTTGGNALKFYSSVRLDIRR GSIK  + + GN+TRVKV+KNK+A PF+
Sbjct: 1   MKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNETRVKVIKNKVAPPFR 60

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           Q EFDI+YGEGIS+ GELID+GVK  I++KSGAW+S+ G ++GQG++N +++L+EN E+A
Sbjct: 61  QAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQGKDNVRVWLKENPEVA 120

Query: 325 ENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           + I++ +R   G+  +  + E   +  D    ++
Sbjct: 121 DEIDAKIRALNGV--EMHITEGTQDETDGEGPEE 152


>gi|307563556|gb|ADN52345.1| RecA [Rhizobium sp. CCNWSX0457]
 gi|307563558|gb|ADN52346.1| RecA [Rhizobium sp. CCNWSX0487]
 gi|307563560|gb|ADN52347.1| RecA [Rhizobium sp. CCNWSX0483]
 gi|307563562|gb|ADN52348.1| RecA [Rhizobium sp. CCNWSX0481]
          Length = 145

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 113/146 (77%), Positives = 131/146 (89%), Gaps = 1/146 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG+   I E +E VS+GSL LDIALGIGG PKGR++EIYGPESSGKTTLAL 
Sbjct: 1   FGKGSIMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRVIEIYGPESSGKTTLALQ 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG CAFVDAEHALD +YARKLGVDL NLLISQPDTGEQALEI D LVRSGA+
Sbjct: 60  TIAEAQKKGGVCAFVDAEHALDPVYARKLGVDLHNLLISQPDTGEQALEIVDTLVRSGAI 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLP 172
           D++V+DSVAALTP+AEIEG+MG+SLP
Sbjct: 120 DVLVVDSVAALTPKAEIEGEMGDSLP 145


>gi|268308921|gb|ACY95421.1| recombination protein A [Rhizobium sp. CCBAU 45111]
          Length = 155

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 130/155 (83%), Positives = 146/155 (94%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +
Sbjct: 1   GSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPV 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+S
Sbjct: 61  YARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDS 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           LPG+QARLMSQALRKLT+SIS+S  +++FINQ+RM
Sbjct: 121 LPGLQARLMSQALRKLTASISKSNTMVIFINQIRM 155


>gi|117667674|gb|ABK55883.1| recombinase A [Streptomyces laceyi]
 gi|220960980|gb|ACL92956.1| recombinase A [Streptomyces caeruleus]
          Length = 168

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 125/168 (74%), Positives = 149/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GGT AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQRAGGTVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ +LL+SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDSLLLSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|291246086|gb|ADD85171.1| RecA [Borrelia duttonii]
          Length = 182

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 122/180 (67%), Positives = 158/180 (87%)

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           GIGG+P+GR+VEI+GPESSGKTTL L  IA+ QKTGG  AF+DAEHALD +YAR LGV++
Sbjct: 1   GIGGYPRGRVVEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNI 60

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
             L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAALTP+AEI+G+MG++  G+QARLM
Sbjct: 61  NELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALTPQAEIDGEMGDTQIGLQARLM 120

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           S+ALRK+T+ +S+S   ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V  +
Sbjct: 121 SKALRKITAILSKSNTCIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKVEQV 180


>gi|301601091|dbj|BAJ13234.1| RecA [Agrobacterium vitis]
          Length = 160

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 128/157 (81%), Positives = 143/157 (91%), Gaps = 1/157 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG+   I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++
Sbjct: 1   IMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEA 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VI
Sbjct: 60  QKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVI 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           DSVAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT 
Sbjct: 120 DSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKLTP 156


>gi|295984328|gb|ADG63632.1| RecA [Sinorhizobium sp. CCBAU 05638]
 gi|295984332|gb|ADG63634.1| RecA [Sinorhizobium sp. CCBAU 05684]
 gi|295984334|gb|ADG63635.1| RecA [Sinorhizobium sp. CCBAU 05646]
          Length = 157

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 131/156 (83%), Positives = 147/156 (94%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +
Sbjct: 1   GSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPV 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+S
Sbjct: 61  YARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDS 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           LPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 121 LPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 156


>gi|167508753|gb|ABZ81581.1| recombinase A [Bradyrhizobium yuanmingense]
 gi|167508755|gb|ABZ81582.1| recombinase A [Bradyrhizobium sp. CCBAU 53152]
 gi|167508757|gb|ABZ81583.1| recombinase A [Bradyrhizobium sp. CCBAU 53229]
 gi|167508761|gb|ABZ81585.1| recombinase A [Bradyrhizobium yuanmingense]
 gi|167508763|gb|ABZ81586.1| recombinase A [Bradyrhizobium sp. CCBAU 65619]
 gi|167508765|gb|ABZ81587.1| recombinase A [Bradyrhizobium liaoningense]
 gi|167508773|gb|ABZ81591.1| recombinase A [Bradyrhizobium yuanmingense]
 gi|167508779|gb|ABZ81594.1| recombinase A [Bradyrhizobium sp. CCBAU 53135]
 gi|209571815|gb|ACI62760.1| recombinase A [Bradyrhizobium sp. SR83]
          Length = 162

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 123/163 (75%), Positives = 143/163 (87%), Gaps = 1/163 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG        IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++Q
Sbjct: 1   MKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+D
Sbjct: 60  KKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           SVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  
Sbjct: 120 SVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNT 162


>gi|220961046|gb|ACL92989.1| recombinase A [Streptomyces macrosporus]
          Length = 168

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 125/168 (74%), Positives = 150/168 (89%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GGFP+GR+VE+YGPESSGKTTL LH +A +QK GGT AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGFPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGTVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ +L++SQPD GEQALEITDML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDVDSLILSQPDNGEQALEITDMLIRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+T ++S+SK   +FINQ+R K+GVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITGALSQSKTTAIFINQLREKVGVMFGSPETTTGGRAL 168


>gi|157000383|gb|ABV00491.1| recombinase A [Streptomyces tricolor]
          Length = 168

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 123/168 (73%), Positives = 147/168 (87%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GGT AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGTVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+  L++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDQLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+T ++++SK   +FINQ+R K+GVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITGALNQSKTTAIFINQLREKVGVMFGSPETTTGGRAL 168


>gi|220960982|gb|ACL92957.1| recombinase A [Streptomyces endus]
 gi|220961024|gb|ACL92978.1| recombinase A [Streptomyces sporocinereus]
 gi|220961078|gb|ACL93005.1| recombinase A [Streptomyces demainii]
 gi|325551428|gb|ADZ28555.1| recombinase A [Streptomyces hygroscopicus subsp. hygroscopicus]
          Length = 168

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 123/168 (73%), Positives = 149/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+TGGT AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQRTGGTVAFVDAEHALDPDYAQKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD  +L++SQPD GEQALEITDML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDSLILSQPDNGEQALEITDMLIRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+T ++++SK   +FINQ+R K+GVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITGALNQSKTTAIFINQLREKVGVMFGSPETTTGGRAL 168


>gi|158631828|gb|ABW75019.1| RecA [Sinorhizobium meliloti]
          Length = 166

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 135/160 (84%), Positives = 150/160 (93%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +
Sbjct: 7   GSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPV 66

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+S
Sbjct: 67  YARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDS 126

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           LPGMQARLMSQALRKLT+SIS+S C+++FINQ+RM IGVM
Sbjct: 127 LPGMQARLMSQALRKLTASISKSNCMVIFINQIRMXIGVM 166


>gi|325651001|emb|CBY89322.1| RecA protein [Bradyrhizobium japonicum]
          Length = 153

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 114/154 (74%), Positives = 136/154 (88%), Gaps = 1/154 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSM-XVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           D++V+DSVAAL P+AE+EG+MG++LPG+QARLMS
Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMS 153


>gi|301601067|dbj|BAJ13222.1| RecA [Agrobacterium vitis]
          Length = 159

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 130/160 (81%), Positives = 145/160 (90%), Gaps = 1/160 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG+   I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VID
Sbjct: 60  KKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           SVAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT SI R
Sbjct: 120 SVAALTPKAEIEGEMGDSLPGMQARLMSQALRKLTGSIQR 159


>gi|157000369|gb|ABV00484.1| recombinase A [Streptomyces griseorubiginosus]
 gi|318084986|gb|ADV39383.1| recombinase A [Streptomyces scabiei]
 gi|318085000|gb|ADV39390.1| recombinase A [Streptomyces niveiscabiei]
          Length = 168

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 125/168 (74%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GG  AFVDAEHALD  YARKL
Sbjct: 1   DVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQRAGGQVAFVDAEHALDPEYARKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDVDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|325650995|emb|CBY89319.1| RecA protein [Bradyrhizobium canariense]
          Length = 153

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 115/154 (74%), Positives = 135/154 (87%), Gaps = 1/154 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH
Sbjct: 1   FGKGSVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 60  TVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           D++VIDSVAAL P+AE+EG+MG++LPG+QARLMS
Sbjct: 120 DVLVIDSVAALVPKAELEGEMGDALPGLQARLMS 153


>gi|207080807|gb|ACI22747.1| RecA [Agrobacterium sp. J3-N16]
 gi|207080827|gb|ACI22757.1| RecA [Agrobacterium sp. J3-34]
          Length = 156

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 126/157 (80%), Positives = 143/157 (91%), Gaps = 1/157 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG+   I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TI
Sbjct: 1   KGSVMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 60  AEAQKKGGVCAFVDAEHALDPVYARKLGVDLQGLLISQPDTGEQALEITDTLVRSGAIDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           +VIDSVAALTP+AEIEG+MG+SLPGMQARLMSQALRK
Sbjct: 120 LVIDSVAALTPKAEIEGEMGDSLPGMQARLMSQALRK 156


>gi|193227215|emb|CAQ17078.1| recombinase A [Sinorhizobium americanum]
          Length = 149

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 121/149 (81%), Positives = 138/149 (92%), Gaps = 1/149 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+
Sbjct: 1   KGSIMKLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTV 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 60  AEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           +V+DSVAAL PRAEIEG+MG+SLPGMQAR
Sbjct: 120 LVVDSVAALVPRAEIEGEMGDSLPGMQAR 148


>gi|167508777|gb|ABZ81593.1| recombinase A [Bradyrhizobium sp. CCBAU 43277]
          Length = 162

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 123/163 (75%), Positives = 144/163 (88%), Gaps = 1/163 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG +      IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++Q
Sbjct: 1   MKLG-KSDRSMDIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+D
Sbjct: 60  KKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           SVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  
Sbjct: 120 SVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNT 162


>gi|220961002|gb|ACL92967.1| recombinase A [Streptomyces antimycoticus]
 gi|220961020|gb|ACL92976.1| recombinase A [Streptomyces melanosporofaciens]
 gi|220961056|gb|ACL92994.1| recombinase A [Streptomyces castelarensis]
 gi|220961058|gb|ACL92995.1| recombinase A [Streptomyces sporoclivatus]
 gi|220961062|gb|ACL92997.1| recombinase A [Streptomyces indonesiensis]
 gi|220961064|gb|ACL92998.1| recombinase A [Streptomyces rhizosphaericus]
 gi|220961066|gb|ACL92999.1| recombinase A [Streptomyces asiaticus]
 gi|220961068|gb|ACL93000.1| recombinase A [Streptomyces javensis]
 gi|220961070|gb|ACL93001.1| recombinase A [Streptomyces yogyakartensis]
 gi|220961072|gb|ACL93002.1| recombinase A [Streptomyces cangkringensis]
          Length = 168

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 124/168 (73%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GGT AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQRAGGTVAFVDAEHALDPDYAQKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD  +L++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDSLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|297523477|emb|CBH31146.1| recombination protein A [Mesorhizobium sp. LKU3]
          Length = 152

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 123/153 (80%), Positives = 140/153 (91%), Gaps = 1/153 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG+   I E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++Q
Sbjct: 1   MRLGANEKIVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGAVD++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           SVAALTPRAEIEG+MG+SLPG+QARLMSQALRK
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 152


>gi|33087859|gb|AAP93060.1| recombination protein A [Yersinia mollaretii]
          Length = 158

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 109/158 (68%), Positives = 132/158 (83%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEH
Sbjct: 1   ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRAGKTCAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG
Sbjct: 61  ALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           ++G+S  G+ AR+MSQA+RKL  ++  +  +L+FINQ+
Sbjct: 121 EIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQI 158


>gi|291172966|gb|ADD82750.1| recombinase A [Rhizobium sp. CCBAU 85032]
          Length = 156

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 129/156 (82%), Positives = 147/156 (94%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SL LDIALGIGG PKGR++EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +Y
Sbjct: 1   SLSLDIALGIGGLPKGRVIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           ARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAAL PRAEIEG+MG+SL
Sbjct: 61  ARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALVPRAEIEGEMGDSL 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           PG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKI
Sbjct: 121 PGLQARLMSQALRKLTASISKSNCMVIFINQIRMKI 156


>gi|220960992|gb|ACL92962.1| recombinase A [Streptomyces violaceusniger]
          Length = 168

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 122/168 (72%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GGT AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQRAGGTVAFVDAEHALDPDYAQKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD  +L++SQPD GEQALEITDML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDSLILSQPDNGEQALEITDMLIRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+T ++++SK   +FINQ+R K+GVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITGALNQSKTTAIFINQLREKVGVMFGSPETTTGGRAL 168


>gi|325651043|emb|CBY89343.1| RecA protein [Bradyrhizobium sp. R-45657=978T2]
          Length = 155

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 115/154 (74%), Positives = 135/154 (87%), Gaps = 1/154 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG++M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH
Sbjct: 3   FGKGSVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 61

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAV
Sbjct: 62  TVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 121

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           D++VIDSVAAL P+AE+EG+MG++LPG+QARLMS
Sbjct: 122 DVLVIDSVAALVPKAELEGEMGDALPGLQARLMS 155


>gi|301601083|dbj|BAJ13230.1| RecA [Agrobacterium vitis]
          Length = 160

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 128/157 (81%), Positives = 144/157 (91%), Gaps = 1/157 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG+   I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++
Sbjct: 1   IMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEA 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VI
Sbjct: 60  QKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVI 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           DSVAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT+
Sbjct: 120 DSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKLTA 156


>gi|117667632|gb|ABK55862.1| recombinase A [Streptomyces finlayi]
          Length = 168

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 125/168 (74%), Positives = 149/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GGT AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKLGGTVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|318084944|gb|ADV39362.1| recombinase A [Streptomyces phaeochromogenes]
          Length = 168

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 123/168 (73%), Positives = 145/168 (86%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+T ++ +S    +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITGALHQSGTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|220960976|gb|ACL92954.1| recombinase A [Streptomyces hygroscopicus subsp. hygroscopicus]
          Length = 168

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 121/168 (72%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE++GPESSGKTTL LH +A +Q+ GGT AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVFGPESSGKTTLTLHAVANAQRAGGTVAFVDAEHALDPDYAQKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD  +L++SQPD GEQALEITDML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDSLILSQPDNGEQALEITDMLIRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+T ++++SK   +FINQ+R K+GVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITGALNQSKTTAIFINQLREKVGVMFGSPETTTGGRAL 168


>gi|167508769|gb|ABZ81589.1| recombinase A [Bradyrhizobium japonicum]
          Length = 162

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 121/163 (74%), Positives = 143/163 (87%), Gaps = 1/163 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++Q
Sbjct: 1   MKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+D
Sbjct: 60  KKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           SVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  
Sbjct: 120 SVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNT 162


>gi|313493736|gb|ADR57221.1| recombinase A [Bradyrhizobium elkanii]
          Length = 161

 Score =  166 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 121/162 (74%), Positives = 144/162 (88%), Gaps = 1/162 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           +M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++
Sbjct: 1   VMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEA 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+
Sbjct: 60  QKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVV 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 120 DSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 161


>gi|325512763|gb|ADZ23570.1| RecA [Sinorhizobium fredii]
          Length = 157

 Score =  166 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 132/158 (83%), Positives = 146/158 (92%), Gaps = 1/158 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           SVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SI
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASI 157


>gi|318084978|gb|ADV39379.1| recombinase A [Streptomyces turgidiscabies]
 gi|318084994|gb|ADV39387.1| recombinase A [Streptomyces reticuliscabiei]
          Length = 168

 Score =  166 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 124/168 (73%), Positives = 147/168 (87%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+T ++S+S+   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITGALSQSQTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|23194273|gb|AAN15084.1| RecA protein [Vibrio cholerae]
          Length = 190

 Score =  166 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 127/187 (67%), Positives = 160/187 (85%)

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D 
Sbjct: 1   KTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDA 60

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           L RSGAVD+IV+DSVAALTP A  EG+MG+S  G+ AR++SQA+RKLT ++ +S C+ +F
Sbjct: 61  LARSGAVDVIVVDSVAALTPSAXXEGEMGDSHMGLLARMLSQAMRKLTGNLKQSNCMCIF 120

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           INQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+
Sbjct: 121 INQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKI 180

Query: 260 ASPFKQV 266
           A+PFK+ 
Sbjct: 181 AAPFKEA 187


>gi|167508771|gb|ABZ81590.1| recombinase A [Bradyrhizobium sp. CCBAU 35139]
 gi|167508775|gb|ABZ81592.1| recombinase A [Bradyrhizobium sp. CCBAU 33143]
          Length = 162

 Score =  166 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 124/163 (76%), Positives = 143/163 (87%), Gaps = 1/163 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG        IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++Q
Sbjct: 1   MKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VID
Sbjct: 60  KKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           SVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  
Sbjct: 120 SVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNT 162


>gi|318084974|gb|ADV39377.1| recombinase A [Streptomyces scabiei]
 gi|318084980|gb|ADV39380.1| recombinase A [Streptomyces scabiei]
 gi|318084984|gb|ADV39382.1| recombinase A [Streptomyces scabiei]
 gi|318084988|gb|ADV39384.1| recombinase A [Streptomyces scabiei]
 gi|318084990|gb|ADV39385.1| recombinase A [Streptomyces scabiei]
 gi|318084996|gb|ADV39388.1| recombinase A [Streptomyces stelliscabiei]
 gi|318085002|gb|ADV39391.1| recombinase A [Streptomyces bottropensis]
          Length = 168

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 123/168 (73%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR++E+YGPESSGKTTL LH +A +Q+ GG  AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVIEVYGPESSGKTTLTLHAVANAQRAGGQVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|296178612|dbj|BAJ07689.1| recombinase A [Kosmotoga arenicorallina]
          Length = 190

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 127/190 (66%), Positives = 159/190 (83%)

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR++EIYG ESSGKTT+ALH IA+ QK GG  AFVDAEHALD  YAR LG+D+ +LLISQ
Sbjct: 1   GRVIEIYGAESSGKTTIALHAIAEVQKAGGIAAFVDAEHALDMSYARALGIDVDSLLISQ 60

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD GEQALEI + LVRS AVD++V+DSVAAL PRAEIEG MGE   G+QARLMSQALRK+
Sbjct: 61  PDYGEQALEIVEGLVRSNAVDLVVVDSVAALVPRAEIEGSMGELQVGLQARLMSQALRKI 120

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
             ++S+S+ I++FINQ RMKIGV++G+PETTTGG ALKFYSSVRL++RR  ++++ + + 
Sbjct: 121 AGTVSKSRSIVMFINQTRMKIGVVYGNPETTTGGVALKFYSSVRLEVRRSSALREGNEVI 180

Query: 247 GNQTRVKVVK 256
           GN+  +KVVK
Sbjct: 181 GNEVTIKVVK 190


>gi|301601089|dbj|BAJ13233.1| RecA [Agrobacterium vitis]
          Length = 160

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 128/157 (81%), Positives = 144/157 (91%), Gaps = 1/157 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG+   I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++
Sbjct: 1   IMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEA 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VI
Sbjct: 60  QKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVI 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           DSVAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT+
Sbjct: 120 DSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKLTA 156


>gi|213950732|gb|ACJ54611.1| recombination protein A [Sinorhizobium sp. CCBAU 51063]
          Length = 153

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 125/152 (82%), Positives = 140/152 (92%), Gaps = 1/152 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TI
Sbjct: 3   KGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTI 61

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 62  AEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDV 121

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +V+DSVAAL PRAEIEG+MG+SLPGMQARLMS
Sbjct: 122 LVVDSVAALVPRAEIEGEMGDSLPGMQARLMS 153


>gi|213012306|gb|ACJ38719.1| recombination-repair protein [Vibrio parahaemolyticus]
          Length = 180

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 126/180 (70%), Positives = 158/180 (87%)

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DS
Sbjct: 1   EGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDS 60

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           VAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+
Sbjct: 61  VAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGN 120

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IMYG
Sbjct: 121 PETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYG 180


>gi|325515715|gb|ADZ24471.1| recombination protein A [Bradyrhizobium japonicum]
 gi|325515721|gb|ADZ24474.1| recombination protein A [Bradyrhizobium japonicum]
          Length = 156

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 121/156 (77%), Positives = 145/156 (92%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +Y
Sbjct: 1   SLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           ARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++L
Sbjct: 61  ARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDAL 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           PG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 PGLQARLMSQALRKLTASINKSHTMVIFINQIRMKI 156


>gi|117667710|gb|ABK55901.1| recombinase A [Streptomyces fulvorobeus]
          Length = 168

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 124/168 (73%), Positives = 149/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GGT AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKLGGTVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLIRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|117667604|gb|ABK55848.1| recombinase A [Streptomyces californicus]
 gi|117667706|gb|ABK55899.1| recombinase A [Streptomyces floridae]
 gi|157000381|gb|ABV00490.1| recombinase A [Streptomyces puniceus]
          Length = 168

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 124/168 (73%), Positives = 150/168 (89%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GG+ AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQRLGGSVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|318084942|gb|ADV39361.1| recombinase A [Streptomyces cinereoruber subsp. fructofermentans]
          Length = 168

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 124/168 (73%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GG  AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQRAGGQVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|325515703|gb|ADZ24465.1| recombination protein A [Bradyrhizobium sp. CCBAU 15766]
 gi|325515707|gb|ADZ24467.1| recombination protein A [Bradyrhizobium yuanmingense]
 gi|325515723|gb|ADZ24475.1| recombination protein A [Bradyrhizobium sp. CCBAU 15774]
 gi|330369294|gb|AEC12037.1| recombination protein A [Bradyrhizobium sp. CCBAU 25541]
          Length = 156

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 122/156 (78%), Positives = 145/156 (92%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +Y
Sbjct: 1   SLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           ARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++L
Sbjct: 61  ARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDAL 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           PG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 PGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 156


>gi|157000367|gb|ABV00483.1| recombinase A [Streptomyces globosus]
 gi|318084954|gb|ADV39367.1| recombinase A [Streptomyces neyagawaensis]
 gi|318084960|gb|ADV39370.1| recombinase A [Streptomyces alanosinicus]
 gi|318084970|gb|ADV39375.1| recombinase A [Streptomyces ipomoeae]
 gi|318084998|gb|ADV39389.1| recombinase A [Streptomyces puniciscabiei]
          Length = 168

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 127/168 (75%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VEIYGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YARKL
Sbjct: 1   DVALGVGGLPRGRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYARKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|117667608|gb|ABK55850.1| recombinase A [Streptomyces yanii]
 gi|117667654|gb|ABK55873.1| recombinase A [Streptomyces albovinaceus]
 gi|117667690|gb|ABK55891.1| recombinase A [Streptomyces griseoplanus]
 gi|117667692|gb|ABK55892.1| recombinase A [Streptomyces griseinus]
 gi|117667696|gb|ABK55894.1| recombinase A [Streptomyces mediolani]
 gi|157000377|gb|ABV00488.1| recombinase A [Streptomyces parvus]
 gi|294963355|gb|ADF50162.1| recombinase A [Streptomyces flavogriseus]
 gi|294963357|gb|ADF50163.1| recombinase A [Streptomyces flavogriseus]
 gi|294963359|gb|ADF50164.1| recombinase A [Streptomyces flavogriseus]
 gi|294963361|gb|ADF50165.1| recombinase A [Streptomyces flavogriseus]
 gi|294963363|gb|ADF50166.1| recombinase A [Streptomyces flavogriseus]
 gi|294963365|gb|ADF50167.1| recombinase A [Streptomyces flavogriseus]
 gi|294963367|gb|ADF50168.1| recombinase A [Streptomyces flavogriseus]
 gi|294963369|gb|ADF50169.1| recombinase A [Streptomyces flavogriseus]
 gi|294963371|gb|ADF50170.1| recombinase A [Streptomyces flavogriseus]
 gi|294963373|gb|ADF50171.1| recombinase A [Streptomyces flavogriseus]
 gi|294963375|gb|ADF50172.1| recombinase A [Streptomyces flavogriseus]
 gi|294963377|gb|ADF50173.1| recombinase A [Streptomyces flavogriseus]
 gi|294963379|gb|ADF50174.1| recombinase A [Streptomyces flavogriseus]
 gi|294963381|gb|ADF50175.1| recombinase A [Streptomyces flavogriseus]
 gi|294963383|gb|ADF50176.1| recombinase A [Streptomyces flavogriseus]
 gi|294963385|gb|ADF50177.1| recombinase A [Streptomyces flavogriseus]
 gi|294963387|gb|ADF50178.1| recombinase A [Streptomyces flavogriseus]
 gi|294963389|gb|ADF50179.1| recombinase A [Streptomyces flavogriseus]
 gi|294963391|gb|ADF50180.1| recombinase A [Streptomyces flavogriseus]
 gi|294963393|gb|ADF50181.1| recombinase A [Streptomyces flavogriseus]
 gi|294963395|gb|ADF50182.1| recombinase A [Streptomyces flavogriseus]
 gi|294963397|gb|ADF50183.1| recombinase A [Streptomyces flavogriseus]
 gi|294963399|gb|ADF50184.1| recombinase A [Streptomyces flavogriseus]
 gi|294963401|gb|ADF50185.1| recombinase A [Streptomyces flavogriseus]
 gi|294963403|gb|ADF50186.1| recombinase A [Streptomyces flavogriseus]
 gi|294963405|gb|ADF50187.1| recombinase A [Streptomyces flavogriseus]
 gi|294963407|gb|ADF50188.1| recombinase A [Streptomyces flavogriseus]
 gi|294963409|gb|ADF50189.1| recombinase A [Streptomyces flavogriseus]
 gi|294963411|gb|ADF50190.1| recombinase A [Streptomyces flavogriseus]
 gi|294963413|gb|ADF50191.1| recombinase A [Streptomyces flavogriseus]
 gi|294963415|gb|ADF50192.1| recombinase A [Streptomyces flavogriseus]
 gi|294963417|gb|ADF50193.1| recombinase A [Streptomyces flavogriseus]
 gi|294963419|gb|ADF50194.1| recombinase A [Streptomyces flavogriseus]
 gi|294963421|gb|ADF50195.1| recombinase A [Streptomyces flavogriseus]
 gi|294963423|gb|ADF50196.1| recombinase A [Streptomyces flavogriseus]
 gi|294963425|gb|ADF50197.1| recombinase A [Streptomyces flavogriseus]
 gi|294963427|gb|ADF50198.1| recombinase A [Streptomyces flavogriseus]
          Length = 168

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 122/168 (72%), Positives = 149/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GG+ AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQRLGGSVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ +L++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDSLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|117667610|gb|ABK55851.1| recombinase A [Streptomyces vinaceus]
 gi|117667612|gb|ABK55852.1| recombinase A [Streptomyces galilaeus]
 gi|117667624|gb|ABK55858.1| recombinase A [Streptomyces exfoliatus]
 gi|117667662|gb|ABK55877.1| recombinase A [Streptomyces argenteolus]
 gi|117667686|gb|ABK55889.1| recombinase A [Streptomyces albus]
 gi|157000365|gb|ABV00482.1| recombinase A [Streptomyces globisporus subsp. globisporus]
 gi|220960978|gb|ACL92955.1| recombinase A [Streptomyces sioyaensis]
 gi|220961082|gb|ACL93007.1| recombinase A [Streptomyces canescens]
 gi|220961084|gb|ACL93008.1| recombinase A [Streptomyces champavatii]
 gi|220961088|gb|ACL93010.1| recombinase A [Streptomyces felleus]
 gi|220961090|gb|ACL93011.1| recombinase A [Streptomyces globisporus subsp. caucasicus]
 gi|220961092|gb|ACL93012.1| recombinase A [Streptomyces limosus]
 gi|220961094|gb|ACL93013.1| recombinase A [Streptomyces odorifer]
 gi|220961096|gb|ACL93014.1| recombinase A [Streptomyces sampsonii]
 gi|220961098|gb|ACL93015.1| recombinase A [Streptomyces coelicolor]
 gi|220961100|gb|ACL93016.1| recombinase A [Streptomyces albidoflavus]
          Length = 168

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 126/168 (75%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           DIALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KL
Sbjct: 1   DIALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|318084976|gb|ADV39378.1| recombinase A [Streptomyces acidiscabies]
          Length = 168

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 124/168 (73%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GG  AF+DAEHALD  YARKL
Sbjct: 1   DVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQRAGGQVAFIDAEHALDPEYARKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|117667622|gb|ABK55857.1| recombinase A [Streptomyces badius]
          Length = 168

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 123/168 (73%), Positives = 150/168 (89%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GG+ AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQRLGGSVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ +L++SQPD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDSLILSQPDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|158905757|gb|ABW82534.1| RecA [Shinella kummerowiae]
          Length = 161

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 134/162 (82%), Positives = 149/162 (91%), Gaps = 1/162 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG + SI E  E VS+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTLAL TIA+SQ
Sbjct: 1   MKLGGKDSIIE-TETVSTGSLGLDVALGIGGLPKGRIIEIYGPESSGKTTLALQTIAESQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           SVAALTPRAEIEG+MGESLPG+QARLMSQALRKLT+SIS+S 
Sbjct: 120 SVAALTPRAEIEGEMGESLPGLQARLMSQALRKLTASISKSN 161


>gi|117667606|gb|ABK55849.1| recombinase A [Streptomyces sindenensis]
          Length = 168

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 123/168 (73%), Positives = 150/168 (89%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GG+ AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQRQGGSVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ +L++SQPD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDSLILSQPDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|117667636|gb|ABK55864.1| recombinase A [Streptomyces venezuelae]
          Length = 168

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 127/168 (75%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           DIALG+GG P+GR+VEIYGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KL
Sbjct: 1   DIALGVGGLPRGRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|318084958|gb|ADV39369.1| recombinase A [Streptomyces lavendofoliae]
          Length = 168

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 125/168 (74%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAQKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|117667634|gb|ABK55863.1| recombinase A [Streptomyces kanamyceticus]
          Length = 168

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 124/168 (73%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GG  AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQRAGGAVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|301601087|dbj|BAJ13232.1| RecA [Agrobacterium vitis]
          Length = 160

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 128/157 (81%), Positives = 144/157 (91%), Gaps = 1/157 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG+   I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++
Sbjct: 1   IMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEA 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VI
Sbjct: 60  QKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVI 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           DSVAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT+
Sbjct: 120 DSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKLTA 156


>gi|318084948|gb|ADV39364.1| recombinase A [Streptomyces umbrinus]
 gi|318084968|gb|ADV39374.1| recombinase A [Streptomyces ederensis]
          Length = 168

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 124/168 (73%), Positives = 146/168 (86%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+T ++S+S    +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITGALSQSGTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|220960998|gb|ACL92965.1| recombinase A [Streptomyces albulus]
 gi|318084950|gb|ADV39365.1| recombinase A [Streptomyces gobitricini]
 gi|318084966|gb|ADV39373.1| recombinase A [Streptomyces luridus]
          Length = 168

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 126/168 (75%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VEIYGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAQKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|325512795|gb|ADZ23586.1| RecA [Sinorhizobium fredii]
          Length = 159

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 135/159 (84%), Positives = 150/159 (94%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IY
Sbjct: 1   SLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           ARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SL
Sbjct: 61  ARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSL 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           PGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 121 PGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 159


>gi|117667620|gb|ABK55856.1| recombinase A [Streptomyces atroolivaceus]
 gi|117667628|gb|ABK55860.1| recombinase A [Streptomyces anulatus]
 gi|117667640|gb|ABK55866.1| recombinase A [Streptomyces cyaneofuscatus]
 gi|117667664|gb|ABK55878.1| recombinase A [Streptomyces mutomycini]
 gi|117667668|gb|ABK55880.1| recombinase A [Streptomyces praecox]
 gi|117667688|gb|ABK55890.1| recombinase A [Streptomyces griseolus]
 gi|157000353|gb|ABV00476.1| recombinase A [Streptomyces griseus]
 gi|157000373|gb|ABV00486.1| recombinase A [Streptomyces nitrosporeus]
 gi|157000375|gb|ABV00487.1| recombinase A [Streptomyces olivoviridis]
          Length = 168

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 124/168 (73%), Positives = 149/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKLGGSVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|117667708|gb|ABK55900.1| recombinase A [Streptomyces mauvecolor]
          Length = 168

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 125/168 (74%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGAVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|301601077|dbj|BAJ13227.1| RecA [Agrobacterium vitis]
          Length = 160

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 127/161 (78%), Positives = 143/161 (88%), Gaps = 1/161 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG+   I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++
Sbjct: 1   IMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEA 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VI
Sbjct: 60  QKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVI 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           DSVAALTP+AEIEG+MG+SLPGMQARLMSQALRK T  +  
Sbjct: 120 DSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKQTRLVEN 160


>gi|117667656|gb|ABK55874.1| recombinase A [Streptomyces cyaneus]
 gi|157000357|gb|ABV00478.1| recombinase A [Streptomyces clavifer]
 gi|157000385|gb|ABV00492.1| recombinase A [Streptomyces rubiginosohelvolus]
 gi|318084982|gb|ADV39381.1| recombinase A [Streptomyces scabiei]
 gi|318084992|gb|ADV39386.1| recombinase A [Streptomyces europaeiscabiei]
 gi|325551434|gb|ADZ28558.1| recombinase A [Streptomyces kishiwadensis]
          Length = 168

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 125/168 (74%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|117667700|gb|ABK55896.1| recombinase A [Streptomyces tanashiensis]
 gi|157000379|gb|ABV00489.1| recombinase A [Streptomyces pluricolorescens]
 gi|220960968|gb|ACL92950.1| recombinase A [Streptomyces hygroscopicus subsp. angustmyceticus]
 gi|220960970|gb|ACL92951.1| recombinase A [Streptomyces noursei]
 gi|220961004|gb|ACL92968.1| recombinase A [Streptomyces coerulescens]
 gi|220961076|gb|ACL93004.1| recombinase A [Streptomyces sclerotialus]
 gi|318084962|gb|ADV39371.1| recombinase A [Streptomyces hygroscopicus subsp. ossamyceticus]
 gi|318084964|gb|ADV39372.1| recombinase A [Streptomyces torulosus]
          Length = 168

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 126/168 (75%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VEIYGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|325515713|gb|ADZ24470.1| recombination protein A [Bradyrhizobium sp. CCBAU 15796]
          Length = 159

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 126/159 (79%), Positives = 148/159 (93%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +Y
Sbjct: 1   SLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           ARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++L
Sbjct: 61  ARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGDAL 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           PG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIGVM
Sbjct: 121 PGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVM 159


>gi|325515717|gb|ADZ24472.1| recombination protein A [Bradyrhizobium japonicum]
 gi|325515719|gb|ADZ24473.1| recombination protein A [Bradyrhizobium japonicum]
          Length = 156

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 121/156 (77%), Positives = 145/156 (92%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +Y
Sbjct: 1   SLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           ARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++L
Sbjct: 61  ARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDAL 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           PG+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 PGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 156


>gi|117667602|gb|ABK55847.1| recombinase A [Streptomyces luridiscabiei]
 gi|117667614|gb|ABK55853.1| recombinase A [Streptomyces ornatus]
 gi|117667618|gb|ABK55855.1| recombinase A [Streptomyces griseus]
 gi|117667626|gb|ABK55859.1| recombinase A [Streptomyces griseus subsp. griseus]
 gi|117667630|gb|ABK55861.1| recombinase A [Streptomyces microflavus]
 gi|117667648|gb|ABK55870.1| recombinase A [Streptomyces erumpens]
 gi|117667650|gb|ABK55871.1| recombinase A [Streptomyces alboviridis]
 gi|117667652|gb|ABK55872.1| recombinase A [Streptomyces fimicarius]
 gi|117667658|gb|ABK55875.1| recombinase A [Streptomyces acrimycini]
 gi|117667678|gb|ABK55885.1| recombinase A [Streptomyces caviscabies]
 gi|117667682|gb|ABK55887.1| recombinase A [Streptomyces microflavus]
 gi|117667684|gb|ABK55888.1| recombinase A [Streptomyces microflavus]
 gi|117667694|gb|ABK55893.1| recombinase A [Streptomyces flavogriseus]
 gi|117667704|gb|ABK55898.1| recombinase A [Streptomyces pulveraceus]
 gi|157000347|gb|ABV00473.1| recombinase A [Streptomyces atratus]
 gi|157000349|gb|ABV00474.1| recombinase A [Streptomyces baarnensis]
 gi|157000359|gb|ABV00479.1| recombinase A [Streptomyces flavofuscus]
 gi|157000361|gb|ABV00480.1| recombinase A [Streptomyces flavovirens]
 gi|157000363|gb|ABV00481.1| recombinase A [Streptomyces gelaticus]
 gi|220960956|gb|ACL92944.1| recombinase A [Streptomyces griseus]
 gi|220960958|gb|ACL92945.1| recombinase A [Streptomyces griseus]
 gi|220960960|gb|ACL92946.1| recombinase A [Streptomyces griseus]
 gi|220960962|gb|ACL92947.1| recombinase A [Streptomyces griseus]
 gi|220960964|gb|ACL92948.1| recombinase A [Streptomyces griseus]
 gi|220960966|gb|ACL92949.1| recombinase A [Streptomyces griseus]
          Length = 168

 Score =  165 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 123/168 (73%), Positives = 149/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKLGGSVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ +L++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDSLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|318084946|gb|ADV39363.1| recombinase A [Streptomyces diastatochromogenes]
          Length = 168

 Score =  165 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 125/168 (74%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VEIYGPESSGKTTL LH +A +QK GG  AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFIDAEHALDPEYAQKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|117667676|gb|ABK55884.1| recombinase A [Streptomyces aureus]
          Length = 168

 Score =  165 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 124/168 (73%), Positives = 149/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|157000355|gb|ABV00477.1| recombinase A [Streptomyces cinereorectus]
          Length = 168

 Score =  165 bits (417), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 123/168 (73%), Positives = 145/168 (86%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VEIYGPESSGKTTL LH  A +Q+ GGT AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGIPRGRVVEIYGPESSGKTTLTLHLAANAQRAGGTVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD   LL+SQPDTGEQALEITDML+RSGA+D+++IDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDALLVSQPDTGEQALEITDMLIRSGAIDLVIIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+  ++++S    VFINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKIAGALNQSNTTAVFINQLREKIGVMFGSPETTTGGRAL 168


>gi|117573446|gb|ABK40899.1| recombinase [Pseudomonas sp. C10-181]
 gi|117573448|gb|ABK40900.1| recombinase [Pseudomonas sp. C10-186]
 gi|117573450|gb|ABK40901.1| recombinase [Pseudomonas sp. C10-189]
 gi|117573452|gb|ABK40902.1| recombinase [Pseudomonas sp. C10-190]
 gi|117573454|gb|ABK40903.1| recombinase [Pseudomonas sp. P97.39]
 gi|117573456|gb|ABK40904.1| recombinase [Pseudomonas sp. C10-197]
 gi|117573458|gb|ABK40905.1| recombinase [Pseudomonas sp. C10-204]
 gi|117573460|gb|ABK40906.1| recombinase [Pseudomonas sp. C10-205]
 gi|117573466|gb|ABK40909.1| recombinase [Pseudomonas sp. S7-42]
 gi|117573468|gb|ABK40910.1| recombinase [Pseudomonas sp. C6-11]
 gi|117573470|gb|ABK40911.1| recombinase [Pseudomonas sp. F96.26]
 gi|117573472|gb|ABK40912.1| recombinase [Pseudomonas sp. K93.52]
 gi|117573476|gb|ABK40914.1| recombinase [Pseudomonas sp. P97.1]
 gi|117573478|gb|ABK40915.1| recombinase [Pseudomonas sp. P97.27]
 gi|117573480|gb|ABK40916.1| recombinase [Pseudomonas sp. Q86-87]
 gi|117573484|gb|ABK40918.1| recombinase [Pseudomonas sp. S8-110]
 gi|117573486|gb|ABK40919.1| recombinase [Pseudomonas sp. S8-130]
 gi|117573488|gb|ABK40920.1| recombinase [Pseudomonas sp. S8-151]
 gi|117573496|gb|ABK40924.1| recombinase [Pseudomonas sp. S7-52]
          Length = 160

 Score =  165 bits (417), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 117/162 (72%), Positives = 137/162 (84%), Gaps = 2/162 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           GA+M++G Q    + I  +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L  IA
Sbjct: 1   GAVMRMGDQDR--QAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           Q+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I
Sbjct: 59  QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVI 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           ++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I 
Sbjct: 119 IVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIK 160


>gi|326496625|dbj|BAJ98339.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 336

 Score =  165 bits (417), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 107/277 (38%), Positives = 151/277 (54%), Gaps = 3/277 (1%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +    +  ++D+ KAL+AA++ I   +GKG++ +LGS G  F  +E   SG L LD ALG
Sbjct: 53  LSGEDDPRLIDRQKALDAAMTDINNSFGKGSVTRLGSAGGAF--VETFPSGCLTLDFALG 110

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG PKGR+VE+YGPESSGKTTLALH IA+ QK GG    VDAEHA D  Y++ LGVD++
Sbjct: 111 -GGLPKGRVVEVYGPESSGKTTLALHAIAEIQKLGGNAMLVDAEHAFDPAYSKALGVDIE 169

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           NL++ QPD GE ALEI D + RSGA+D+I IDSV+ALTPRAEIE    E +       + 
Sbjct: 170 NLIVCQPDNGEMALEIADRMCRSGAIDLICIDSVSALTPRAEIEAKGDEDIGVKVRVRVQ 229

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           ++        +  + +          I       E      +   Y  +RL   R  S++
Sbjct: 230 KSKVSRPYKQAEFEIMFGEGVSKLGCILDCAELMEVVAKKGSWYSYKDIRLGQGREKSLQ 289

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277
                      ++ V   M     + +  + +G+  S
Sbjct: 290 YLRENPTVCDEIEKVVRAMIPEGTRHQALLAFGQSSS 326



 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 60/204 (29%), Positives = 96/204 (47%), Gaps = 7/204 (3%)

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN-QMRMKIGVMFGSP 214
           AL   AEI+   G ++          A  K       +  +    N +M ++I       
Sbjct: 133 ALHAIAEIQKLGGNAMLVDAEHAFDPAYSKALGVDIENLIVCQPDNGEMALEIADRMCR- 191

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
              +G   L    SV     R       D   G + RV+V K+K++ P+KQ EF+IM+GE
Sbjct: 192 ---SGAIDLICIDSVSALTPRAEIEAKGDEDIGVKVRVRVQKSKVSRPYKQAEFEIMFGE 248

Query: 275 GISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
           G+S  G ++D      +V K G+W+S+K  RLGQGRE S  +LREN  + + IE ++R  
Sbjct: 249 GVSKLGCILDCAELMEVVAKKGSWYSYKDIRLGQGREKSLQYLRENPTVCDEIEKVVRAM 308

Query: 335 A--GLVADSLLQEPAINTKDDADK 356
              G    +LL     +++ + ++
Sbjct: 309 IPEGTRHQALLAFGQSSSQPEEEE 332


>gi|260748902|gb|ACX48758.1| recombinase protein A [Mesorhizobium sp. AC98b]
 gi|260748904|gb|ACX48759.1| recombinase protein A [Mesorhizobium sp. AC98c]
 gi|260748906|gb|ACX48760.1| recombinase protein A [Mesorhizobium sp. AC98e]
 gi|260748908|gb|ACX48761.1| recombinase protein A [Mesorhizobium sp. AC100c]
 gi|260748910|gb|ACX48762.1| recombinase protein A [Mesorhizobium sp. AC100e]
 gi|260748914|gb|ACX48764.1| recombinase protein A [Mesorhizobium sp. AC28c2]
 gi|260748917|gb|ACX48765.1| recombinase protein A [Mesorhizobium sp. AC39a]
 gi|260748919|gb|ACX48766.1| recombinase protein A [Mesorhizobium sp. AC39c1]
 gi|260748923|gb|ACX48768.1| recombinase protein A [Mesorhizobium sp. AC39e1]
 gi|260748931|gb|ACX48771.1| recombinase protein A [Mesorhizobium sp. AC99c]
 gi|260748933|gb|ACX48772.1| recombinase protein A [Mesorhizobium sp. AC99e]
          Length = 134

 Score =  165 bits (417), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 102/135 (75%), Positives = 121/135 (89%), Gaps = 1/135 (0%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           LSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSG
Sbjct: 1   LSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSG 59

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D 
Sbjct: 60  KTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDT 119

Query: 140 LVRSGAVDIIVIDSV 154
           LVRSGA+D++V+DSV
Sbjct: 120 LVRSGAIDVLVVDSV 134


>gi|301601058|dbj|BAJ13218.1| RecA [Agrobacterium vitis]
          Length = 160

 Score =  165 bits (417), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 128/153 (83%), Positives = 142/153 (92%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDA
Sbjct: 8   EVETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGVCAFVDA 67

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTP+AEI
Sbjct: 68  EHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPKAEI 127

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           EG+MG+SLPGMQARLMSQALRKLT SISRS C+
Sbjct: 128 EGEMGDSLPGMQARLMSQALRKLTGSISRSNCM 160


>gi|325515705|gb|ADZ24466.1| recombination protein A [Bradyrhizobium japonicum]
          Length = 157

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 122/157 (77%), Positives = 146/157 (92%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +Y
Sbjct: 1   SLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           ARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++L
Sbjct: 61  ARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDAL 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           PG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIG
Sbjct: 121 PGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIG 157


>gi|325512849|gb|ADZ23613.1| RecA [Sinorhizobium fredii]
          Length = 156

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 131/157 (83%), Positives = 145/157 (92%), Gaps = 1/157 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           SVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 156


>gi|220960986|gb|ACL92959.1| recombinase A [Streptomyces lydicus]
          Length = 168

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 122/168 (72%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR++E+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVIEVYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD  +L++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDSLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|193227225|emb|CAQ17082.1| recombinase A [Ensifer maghrebium]
 gi|193227227|emb|CAQ17083.1| recombinase A [Ensifer maghrebium]
 gi|193227231|emb|CAQ17084.1| recombinase A [Ensifer maghrebium]
          Length = 149

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 123/149 (82%), Positives = 138/149 (92%), Gaps = 1/149 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TI
Sbjct: 1   KGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 60  AEAQKKGGICAFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           +V+DSVAAL PRAEIEG+MG+SLPGMQAR
Sbjct: 120 LVVDSVAALVPRAEIEGEMGDSLPGMQAR 148


>gi|220960984|gb|ACL92958.1| recombinase A [Streptomyces nigrescens]
 gi|220960988|gb|ACL92960.1| recombinase A [Streptomyces tubercidicus]
 gi|220961052|gb|ACL92992.1| recombinase A [Streptomyces libani subsp. libani]
 gi|325551432|gb|ADZ28557.1| recombinase A [Streptomyces hygroscopicus subsp. angustmyceticus]
          Length = 168

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 123/168 (73%), Positives = 149/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR++E+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVIEVYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD  +L++SQPD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDSLILSQPDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|193227217|emb|CAQ17079.1| recombinase A [Ensifer xericitae]
 gi|193227221|emb|CAQ17080.1| recombinase A [Ensifer xericitae]
 gi|193227223|emb|CAQ17081.1| recombinase A [Ensifer xericitae]
          Length = 149

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 121/149 (81%), Positives = 138/149 (92%), Gaps = 1/149 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG++ S+ E IE +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TI
Sbjct: 1   KGSIMKLGAKDSVIE-IETISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 60  AEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           +V+DSVAAL PRAEIEG+MG+SLPGMQAR
Sbjct: 120 LVVDSVAALVPRAEIEGEMGDSLPGMQAR 148


>gi|260748929|gb|ACX48770.1| recombinase protein A [Mesorhizobium sp. AC99b]
          Length = 134

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 101/135 (74%), Positives = 120/135 (88%), Gaps = 1/135 (0%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           LSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPE SG
Sbjct: 1   LSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPECSG 59

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D 
Sbjct: 60  KTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDT 119

Query: 140 LVRSGAVDIIVIDSV 154
           LVRSGA+D++V+DSV
Sbjct: 120 LVRSGAIDVLVVDSV 134


>gi|297528277|gb|ADI46174.1| recombination protein A [Rhizobium sp. CCBAU 05161]
          Length = 158

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 133/158 (84%), Positives = 149/158 (94%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           L LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YA
Sbjct: 1   LSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           RKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLP
Sbjct: 61  RKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLP 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           G+QARLMSQALRKLT+SIS+S  +++FINQ+RMKIGVM
Sbjct: 121 GLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 158


>gi|220960990|gb|ACL92961.1| recombinase A [Streptomyces chattanoogensis]
          Length = 168

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 122/168 (72%), Positives = 147/168 (87%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR++E+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVIEVYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD   L++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDALILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|220961006|gb|ACL92969.1| recombinase A [Streptomyces albospinus]
          Length = 168

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 125/168 (74%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD  YARKL
Sbjct: 1   DVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYARKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD   L++SQPD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDALILSQPDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|213950724|gb|ACJ54607.1| recombination protein A [Bradyrhizobium japonicum]
          Length = 161

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 121/162 (74%), Positives = 143/162 (88%), Gaps = 1/162 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++Q
Sbjct: 1   MKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+D
Sbjct: 60  KKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           SVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S 
Sbjct: 120 SVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSN 161


>gi|220961042|gb|ACL92987.1| recombinase A [Streptomyces olivaceiscleroticus]
 gi|325551430|gb|ADZ28556.1| recombinase A [Streptomyces niger]
          Length = 168

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 125/168 (74%), Positives = 147/168 (87%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD   L++SQPD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDALILSQPDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|117573462|gb|ABK40907.1| recombinase [Pseudomonas sp. C6-23]
 gi|117573464|gb|ABK40908.1| recombinase [Pseudomonas sp. C6-2]
          Length = 160

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 116/162 (71%), Positives = 136/162 (83%), Gaps = 2/162 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           GA+M++G      + I  +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L  IA
Sbjct: 1   GAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           Q+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I
Sbjct: 59  QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVI 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           ++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I 
Sbjct: 119 IVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIK 160


>gi|213012318|gb|ACJ38725.1| recombination-repair protein [Vibrio sp. R-11]
          Length = 179

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 125/179 (69%), Positives = 156/179 (87%)

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL L  IA +Q+ G TCA +DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI 
Sbjct: 1   SGKTTLTLELIAAAQREGKTCALIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEIC 60

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ 
Sbjct: 61  DALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMC 120

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK
Sbjct: 121 IFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 179


>gi|291172960|gb|ADD82747.1| recombinase A [Rhizobium sp. CCBAU 41230]
 gi|291172962|gb|ADD82748.1| recombinase A [Rhizobium sp. CCBAU 45226]
          Length = 155

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 131/155 (84%), Positives = 147/155 (94%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           L LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YA
Sbjct: 1   LSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           RKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLP
Sbjct: 61  RKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEMGDSLP 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           G+QARLMSQALRKLT+SIS+S C+++FINQ+RMKI
Sbjct: 121 GLQARLMSQALRKLTASISKSNCMVIFINQIRMKI 155


>gi|290889095|gb|ADD69897.1| recombination protein A [Rhizobium alamii]
          Length = 156

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 122/156 (78%), Positives = 146/156 (93%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDA+HALD 
Sbjct: 1   TGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAKHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YARKLGV+L+NLLISQPDTG+QALEITD LVRSGA+D++V++SVAALTPRA+I+G MG+
Sbjct: 61  VYARKLGVNLQNLLISQPDTGKQALEITDTLVRSGAIDVLVVNSVAALTPRAKIKGKMGD 120

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           SLPG+QARLMSQALRKLT+SIS+S  +++FINQ+RM
Sbjct: 121 SLPGLQARLMSQALRKLTASISKSNTMVIFINQIRM 156


>gi|325515701|gb|ADZ24464.1| recombination protein A [Bradyrhizobium sp. CCBAU 15778]
          Length = 155

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 121/155 (78%), Positives = 144/155 (92%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +Y
Sbjct: 1   SLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           ARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++L
Sbjct: 61  ARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDAL 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           PG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 PGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 155


>gi|49036408|gb|AAT48873.1| RecA [Campylobacter fetus]
 gi|49036410|gb|AAT48874.1| RecA [Campylobacter fetus]
          Length = 167

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 116/169 (68%), Positives = 136/169 (80%), Gaps = 2/169 (1%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
            +++LG +    E I+ +SSGS+GLDIALGIGG PKGRIVE+YGPESSGKTTL LH IA+
Sbjct: 1   TVLRLGDKE--IEPIDSISSGSIGLDIALGIGGVPKGRIVEVYGPESSGKTTLTLHLIAE 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           SQK GG CAFVDAEHALD  YA+ LGVD  NL ISQPD GEQAL+I + L RSGAVD+IV
Sbjct: 59  SQKVGGVCAFVDAEHALDVKYAKNLGVDTDNLYISQPDFGEQALDIVETLARSGAVDLIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           IDSVAALTP++EIEGDMG+   G+QARLMSQALRKLT  + +    +VF
Sbjct: 119 IDSVAALTPKSEIEGDMGDQHVGLQARLMSQALRKLTGVVHKMGTTVVF 167


>gi|33087811|gb|AAP93036.1| recombination protein A [Yersinia frederiksenii]
          Length = 151

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 107/153 (69%), Positives = 127/153 (83%), Gaps = 2/153 (1%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 59  IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +I++DSVAALTP+AEIEG++G+S  G+ AR+MS
Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMS 151


>gi|213012582|gb|ACJ38857.1| recombination-repair protein [Vibrio sp. R-775]
          Length = 194

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 132/194 (68%), Positives = 165/194 (85%)

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL L  + Q    G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI 
Sbjct: 1   SGKTTLTLDLLLQRNAKGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEIC 60

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ 
Sbjct: 61  DALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMC 120

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKN
Sbjct: 121 IFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKN 180

Query: 258 KMASPFKQVEFDIM 271
           K+A+PFK+    IM
Sbjct: 181 KIAAPFKEANTQIM 194


>gi|318084952|gb|ADV39366.1| recombinase A [Streptomyces roseolilacinus]
          Length = 168

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 125/168 (74%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VEIYGPESSGKTTL LH +A +QK GG  AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGVPRGRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|49036404|gb|AAT48871.1| RecA [Campylobacter fetus subsp. fetus]
          Length = 167

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 117/169 (69%), Positives = 136/169 (80%), Gaps = 2/169 (1%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
            +++LG +    E I+ +SSGS+GLDIALGIGG PKGRIVEIYGPESSGKTTL LH IA+
Sbjct: 1   TVLRLGDKE--IEPIDSISSGSIGLDIALGIGGVPKGRIVEIYGPESSGKTTLTLHLIAE 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           SQK GG CAFVDAEHALD  YA+ LGVD  NL ISQPD GEQAL+I + L RSGAVD+IV
Sbjct: 59  SQKVGGVCAFVDAEHALDVKYAKNLGVDTDNLYISQPDFGEQALDIVETLARSGAVDLIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           IDSVAALTP++EIEGDMG+   G+QARLMSQALRKLT  + +    +VF
Sbjct: 119 IDSVAALTPKSEIEGDMGDQHVGLQARLMSQALRKLTGVVHKMGTTVVF 167


>gi|301601085|dbj|BAJ13231.1| RecA [Agrobacterium vitis]
          Length = 160

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 127/158 (80%), Positives = 142/158 (89%), Gaps = 1/158 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+LG+   I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTT AL TIA++
Sbjct: 1   IMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTHALQTIAEA 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VI
Sbjct: 60  QKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVI 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           DSVAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT  
Sbjct: 120 DSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKLTPL 157


>gi|220960972|gb|ACL92952.1| recombinase A [Streptomyces ochraceiscleroticus]
 gi|220961028|gb|ACL92980.1| recombinase A [Streptomyces violens]
 gi|220961034|gb|ACL92983.1| recombinase A [Streptomyces purpurogeneiscleroticus]
          Length = 168

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 124/168 (73%), Positives = 146/168 (86%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD   L++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDALILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|291246115|gb|ADD85182.1| RecA [Borrelia recurrentis]
          Length = 186

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 121/181 (66%), Positives = 158/181 (87%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           +GIGG+P+GR+VEI+GPESSGKTTL L  IA+ QKTGG  AF+DAEHALD +YAR LGV+
Sbjct: 1   IGIGGYPRGRVVEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVN 60

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +  L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAAL P+AEI+G+MG++  G+QARL
Sbjct: 61  INELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGLQARL 120

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           MS+ALRK+T+ +S+S   ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V  
Sbjct: 121 MSKALRKITAILSKSNACIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKVEQ 180

Query: 239 I 239
           +
Sbjct: 181 V 181


>gi|220961000|gb|ACL92966.1| recombinase A [Streptomyces caniferus]
 gi|220961030|gb|ACL92981.1| recombinase A [Streptomyces hygroscopicus subsp. glebosus]
 gi|220961040|gb|ACL92986.1| recombinase A [Streptomyces platensis]
 gi|220961044|gb|ACL92988.1| recombinase A [Streptomyces libani subsp. rufus]
          Length = 168

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 124/168 (73%), Positives = 149/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD  +L++SQPD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDSLILSQPDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|117667680|gb|ABK55886.1| recombinase A [Streptomyces griseobrunneus]
 gi|157000351|gb|ABV00475.1| recombinase A [Streptomyces bacillaris]
 gi|157000387|gb|ABV00493.1| recombinase A [Streptomyces sanglieri]
          Length = 168

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 125/168 (74%), Positives = 151/168 (89%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD++NL++SQPD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIENLILSQPDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|289607381|emb|CBI60814.1| unnamed protein product [Sordaria macrospora]
          Length = 209

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 92/151 (60%), Positives = 118/151 (78%), Gaps = 10/151 (6%)

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           +++FINQ+RMKIGVM+G+PETTTGGNALKFY+S          IKD+D I GN TRVKVV
Sbjct: 1   MVIFINQLRMKIGVMYGNPETTTGGNALKFYAS----------IKDRDEIIGNATRVKVV 50

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK+A PFKQVEFDIMYG+GIS  GE++DLGVKA +V+KSGAWFS+   R+GQGREN+K 
Sbjct: 51  KNKVAPPFKQVEFDIMYGQGISKIGEILDLGVKAGLVEKSGAWFSYDSVRIGQGRENAKT 110

Query: 316 FLRENIEIAENIESLLRQNAGLVADSLLQEP 346
           FL E+ E+ + +E+ +RQ    VA+ ++  P
Sbjct: 111 FLTEHPELRDKLEASIRQRTEKVAEEMMTGP 141


>gi|220961012|gb|ACL92972.1| recombinase A [Streptomyces chrestomyceticus]
 gi|220961022|gb|ACL92977.1| recombinase A [Streptomyces rimosus subsp. paromomycinus]
 gi|220961032|gb|ACL92982.1| recombinase A [Streptomyces hygroscopicus subsp. decoyicus]
 gi|220961074|gb|ACL93003.1| recombinase A [Streptomyces monomycini]
 gi|220961086|gb|ACL93009.1| recombinase A [Streptomyces coelicolor]
          Length = 168

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 124/168 (73%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD   L++SQPD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDALILSQPDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|126797722|gb|ABO27382.1| RecA protein [Rhizobium indigoferae]
          Length = 150

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 122/151 (80%), Positives = 140/151 (92%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAALTPRAEIEG+MG+SLPG+QARLMSQAL
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQAL 150


>gi|213950734|gb|ACJ54612.1| recombination protein A [Bradyrhizobium elkanii]
          Length = 160

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 120/161 (74%), Positives = 142/161 (88%), Gaps = 1/161 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           A+M+LG        +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+
Sbjct: 1   AMMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V
Sbjct: 60  GQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           +DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI+
Sbjct: 120 VDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASIN 160


>gi|289190654|gb|ADC93432.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-21]
          Length = 162

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 120/163 (73%), Positives = 142/163 (87%), Gaps = 1/163 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG        +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+ QK
Sbjct: 1   KLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAEGQK 59

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DS
Sbjct: 60  KGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDS 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           VAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +
Sbjct: 120 VAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTM 162


>gi|220960996|gb|ACL92964.1| recombinase A [Streptomyces rimosus subsp. rimosus]
 gi|220961010|gb|ACL92971.1| recombinase A [Streptomyces albofaciens]
          Length = 168

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 124/168 (73%), Positives = 147/168 (87%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VEIYGPESSGKTTL LH +A +QK GG+ AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGIPRGRVVEIYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD   L++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDALILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|260748912|gb|ACX48763.1| recombinase protein A [Mesorhizobium sp. AC21a2]
          Length = 134

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 103/135 (76%), Positives = 120/135 (88%), Gaps = 1/135 (0%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           LSQI+R +GKG+IM+LG+     E IE V +GSLGLDIALG+GG P+GRIVEIYGPESSG
Sbjct: 1   LSQIERAFGKGSIMRLGANEQAVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSG 59

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D 
Sbjct: 60  KTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDT 119

Query: 140 LVRSGAVDIIVIDSV 154
           LVRSGA+D++V+DSV
Sbjct: 120 LVRSGAIDVLVVDSV 134


>gi|325515711|gb|ADZ24469.1| recombination protein A [Bradyrhizobium japonicum]
          Length = 155

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 120/155 (77%), Positives = 144/155 (92%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +Y
Sbjct: 1   SLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           ARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++L
Sbjct: 61  ARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDAL 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           PG+QARLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 PGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 155


>gi|74268799|emb|CAJ29882.1| recombinase A [Lactobacillus rossiae]
          Length = 174

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 120/174 (68%), Positives = 152/174 (87%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D ALG+GG+P+GRIVE+YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD+ YA  L
Sbjct: 1   DDALGVGGYPRGRIVEVYGPESSGKTTIALHAVAEVQKMGGTAAYIDAENALDAQYAEAL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GV + +LL+SQPDTGEQ LEITD LV SGA+DI+VIDSVAAL PRAEIEG+MG++  G+Q
Sbjct: 61  GVKVDDLLLSQPDTGEQGLEITDALVSSGAIDIVVIDSVAALVPRAEIEGEMGDAHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           ARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+++
Sbjct: 121 ARLMSQALRKLSGTINKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATI 174


>gi|220961054|gb|ACL92993.1| recombinase A [Streptomyces kasugaensis]
          Length = 168

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 123/168 (73%), Positives = 146/168 (86%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG  AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGAVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD   L++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDTDALILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|318084972|gb|ADV39376.1| recombinase A [Streptomyces tauricus]
          Length = 168

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 124/168 (73%), Positives = 149/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD++NL++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIENLILSQPDNGEQALEIVDMLIRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|117667616|gb|ABK55854.1| recombinase A [Streptomyces graminofaciens]
 gi|117667672|gb|ABK55882.1| recombinase A [Streptomyces peucetius]
 gi|157000371|gb|ABV00485.1| recombinase A [Streptomyces halstedii]
          Length = 168

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 124/168 (73%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGAVAFVDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPKAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|318085004|gb|ADV39392.1| recombinase A [Streptomyces aurantiacus]
          Length = 168

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 122/168 (72%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +  +QK GG  AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVVNAQKAGGQVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD++NL++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIENLILSQPDNGEQALEIVDMLIRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|289190688|gb|ADC93449.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-3]
 gi|289190690|gb|ADC93450.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-3]
          Length = 162

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 124/163 (76%), Positives = 143/163 (87%), Gaps = 1/163 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG        IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK
Sbjct: 1   KLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQK 59

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DS
Sbjct: 60  KGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVVDS 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           VAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S  +
Sbjct: 120 VAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTM 162


>gi|114150702|gb|ABI51997.1| recombinase A [Pseudomonas fluorescens]
          Length = 181

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 129/181 (71%), Positives = 158/181 (87%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           FVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IV+DSVAAL P
Sbjct: 1   FVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           +AEIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFGSPETTTG
Sbjct: 61  KAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTG 120

Query: 220 GNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFF 279
           GNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+YG+GI   
Sbjct: 121 GNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQILYGKGIYLN 180

Query: 280 G 280
           G
Sbjct: 181 G 181


>gi|302537316|ref|ZP_07289658.1| RecA domain-containing protein [Streptomyces sp. C]
 gi|302446211|gb|EFL18027.1| RecA domain-containing protein [Streptomyces sp. C]
          Length = 121

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 79/123 (64%), Positives = 99/123 (80%), Gaps = 2/123 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M   D+ KAL+AAL+QI+R +GKGA+M+LG + +  + IEV+ +GS  LDIALG+GG P+
Sbjct: 1   MAGTDREKALDAALAQIERQFGKGAVMRLGDKPN--DPIEVIPTGSTALDIALGVGGLPR 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+VEIYGPESSGKTTL LH +A +QK GGT AFVDAEHALD  YA+ LGVD  NL++SQ
Sbjct: 59  GRVVEIYGPESSGKTTLTLHAVANAQKAGGTVAFVDAEHALDPEYAKALGVDTDNLILSQ 118

Query: 127 PDT 129
           PDT
Sbjct: 119 PDT 121


>gi|114150698|gb|ABI51995.1| recombinase A [Pseudomonas sp. PTB2071]
          Length = 183

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 130/183 (71%), Positives = 160/183 (87%)

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           DAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IV+DSVAAL P+A
Sbjct: 1   DAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKA 60

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
           EIEG+MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFGSPETTTGGN
Sbjct: 61  EIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGN 120

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE 281
           ALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+YG+GI   GE
Sbjct: 121 ALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQILYGKGIYLNGE 180

Query: 282 LID 284
           +ID
Sbjct: 181 MID 183


>gi|289190638|gb|ADC93424.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-16]
 gi|289190668|gb|ADC93439.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-23]
 gi|289190712|gb|ADC93461.1| recombinase A protein [Bradyrhizobium yuanmingense]
          Length = 162

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 122/163 (74%), Positives = 143/163 (87%), Gaps = 1/163 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG        IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK
Sbjct: 1   KLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQK 59

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DS
Sbjct: 60  KGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDS 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           VAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +
Sbjct: 120 VAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTM 162


>gi|289190664|gb|ADC93437.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-12]
 gi|289190674|gb|ADC93442.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-12]
          Length = 162

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 125/163 (76%), Positives = 145/163 (88%), Gaps = 1/163 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG +      IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK
Sbjct: 1   KLG-KSDRSMDIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQK 59

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG CAF+DAEHALD +YARKLGV++ +LLISQPDTGEQALEI D LVRSGAVD++VIDS
Sbjct: 60  KGGICAFIDAEHALDPVYARKLGVNIDDLLISQPDTGEQALEICDTLVRSGAVDVMVIDS 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           VAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S  +
Sbjct: 120 VAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTM 162


>gi|325512841|gb|ADZ23609.1| RecA [Bradyrhizobium japonicum]
          Length = 156

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 121/156 (77%), Positives = 145/156 (92%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           LGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YA
Sbjct: 1   LGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           RKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LP
Sbjct: 61  RKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALP 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           G+QARLMSQALRKLT+SI++S  +++FINQ+RMKIG
Sbjct: 121 GLQARLMSQALRKLTASINKSHTMVIFINQIRMKIG 156


>gi|289190614|gb|ADC93412.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-6]
 gi|289190662|gb|ADC93436.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-6]
          Length = 162

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 122/163 (74%), Positives = 144/163 (88%), Gaps = 1/163 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG +      IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK
Sbjct: 1   KLG-KSDRSMDIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQK 59

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DS
Sbjct: 60  KGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDS 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           VAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +
Sbjct: 120 VAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTM 162


>gi|260748921|gb|ACX48767.1| recombinase protein A [Mesorhizobium sp. AC39d]
          Length = 134

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 102/135 (75%), Positives = 120/135 (88%), Gaps = 1/135 (0%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           LSQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI EIYGPESSG
Sbjct: 1   LSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIXEIYGPESSG 59

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D 
Sbjct: 60  KTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDT 119

Query: 140 LVRSGAVDIIVIDSV 154
           LVRSGA+D++V+DSV
Sbjct: 120 LVRSGAIDVLVVDSV 134


>gi|301601075|dbj|BAJ13226.1| RecA [Agrobacterium vitis]
          Length = 159

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 128/159 (80%), Positives = 142/159 (89%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +L S       +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK
Sbjct: 1   KLSSARREIVEVETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQK 60

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDS
Sbjct: 61  KGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVIDS 120

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           VAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT SISR
Sbjct: 121 VAALTPKAEIEGEMGDSLPGMQARLMSQALRKLTGSISR 159


>gi|325512783|gb|ADZ23580.1| RecA [Sinorhizobium fredii]
 gi|325512813|gb|ADZ23595.1| RecA [Sinorhizobium fredii]
          Length = 158

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 134/158 (84%), Positives = 149/158 (94%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           LGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYA
Sbjct: 1   LGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           RKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLP
Sbjct: 61  RKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLP 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           GMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM
Sbjct: 121 GMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 158


>gi|325512771|gb|ADZ23574.1| RecA [Sinorhizobium fredii]
 gi|325512799|gb|ADZ23588.1| RecA [Sinorhizobium fredii]
 gi|325512817|gb|ADZ23597.1| RecA [Sinorhizobium fredii]
 gi|325512837|gb|ADZ23607.1| RecA [Sinorhizobium fredii]
 gi|325512839|gb|ADZ23608.1| RecA [Sinorhizobium fredii]
          Length = 155

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 131/155 (84%), Positives = 146/155 (94%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           LGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYA
Sbjct: 1   LGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           RKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLP
Sbjct: 61  RKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLP 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           GMQARLMSQALRKLT+SIS+S C+++FINQ+RMKI
Sbjct: 121 GMQARLMSQALRKLTASISKSNCMVIFINQIRMKI 155


>gi|325651045|emb|CBY89344.1| RecA protein [Bradyrhizobium sp. R-46172=t240]
 gi|325651049|emb|CBY89346.1| RecA protein [Bradyrhizobium sp. R-46206=t384]
 gi|325651057|emb|CBY89350.1| RecA protein [Bradyrhizobium sp. R-46277=t668]
 gi|325651059|emb|CBY89351.1| RecA protein [Bradyrhizobium sp. R-46304=t779]
 gi|325651061|emb|CBY89352.1| RecA protein [Bradyrhizobium sp. R-46306=t782]
 gi|325651065|emb|CBY89354.1| RecA protein [Bradyrhizobium sp. R-46311=t792]
 gi|325651067|emb|CBY89355.1| RecA protein [Bradyrhizobium sp. R-46313=t795]
          Length = 152

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 115/153 (75%), Positives = 134/153 (87%), Gaps = 1/153 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG++M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT
Sbjct: 1   GKGSVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHT 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           +A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD
Sbjct: 60  VAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVD 119

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           ++VIDSVAAL P+AE+EG+MG++LPG+QARLMS
Sbjct: 120 VLVIDSVAALVPKAELEGEMGDALPGLQARLMS 152


>gi|168838763|gb|ACA35049.1| nonfunctional truncated recombinase A [Mycobacterium bovis BCG str.
           ATCC 35740]
          Length = 139

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 84/135 (62%), Positives = 109/135 (80%), Gaps = 2/135 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+ KALE A++QI++ YGKG++M+LG +    + I V+ +GS+ LD+ALGIGG P+GR
Sbjct: 4   TPDREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           ++EIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHALD  YA+KLGVD  +LL+SQPD
Sbjct: 62  VIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPD 121

Query: 129 TGEQALEITDMLVRS 143
           TGEQALEI DML+RS
Sbjct: 122 TGEQALEIADMLIRS 136


>gi|325512809|gb|ADZ23593.1| RecA [Bradyrhizobium japonicum]
          Length = 155

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 120/155 (77%), Positives = 144/155 (92%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           LGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YA
Sbjct: 1   LGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           RKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LP
Sbjct: 61  RKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALP 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           G+QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 GLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 155


>gi|213012510|gb|ACJ38821.1| recombination-repair protein [Vibrio sp. R-684]
          Length = 176

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 123/176 (69%), Positives = 154/176 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRI 176


>gi|222544083|gb|ACM66902.1| recombinase A [Sinorhizobium meliloti]
          Length = 145

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 115/142 (80%), Positives = 130/142 (91%), Gaps = 1/142 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL 
Sbjct: 5   FGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 63

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+
Sbjct: 64  TIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAI 123

Query: 147 DIIVIDSVAALTPRAEIEGDMG 168
           DI+VIDSVAAL PRAEIEG+MG
Sbjct: 124 DILVIDSVAALVPRAEIEGEMG 145


>gi|289190704|gb|ADC93457.1| recombinase A protein [Bradyrhizobium japonicum]
          Length = 162

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 120/163 (73%), Positives = 143/163 (87%), Gaps = 1/163 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK
Sbjct: 1   KLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQK 59

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DS
Sbjct: 60  KGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDS 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           VAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +
Sbjct: 120 VAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTM 162


>gi|117573474|gb|ABK40913.1| recombinase [Pseudomonas sp. K94.38]
          Length = 156

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 116/158 (73%), Positives = 135/158 (85%), Gaps = 2/158 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           GA+M++G Q    + I  +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L  IA
Sbjct: 1   GAVMRMGDQDR--QAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           Q+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I
Sbjct: 59  QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVI 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           ++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+T
Sbjct: 119 IVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKIT 156


>gi|289190620|gb|ADC93415.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-1]
 gi|289190642|gb|ADC93426.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-1]
 gi|289190666|gb|ADC93438.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-1]
 gi|289190694|gb|ADC93452.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-4]
 gi|289190702|gb|ADC93456.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-4]
          Length = 162

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 123/163 (75%), Positives = 143/163 (87%), Gaps = 1/163 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG        IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK
Sbjct: 1   KLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQK 59

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDS
Sbjct: 60  KGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDS 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           VAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +
Sbjct: 120 VAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTM 162


>gi|325515709|gb|ADZ24468.1| recombination protein A [Bradyrhizobium japonicum]
          Length = 154

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 119/154 (77%), Positives = 143/154 (92%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +Y
Sbjct: 1   SLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           ARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++L
Sbjct: 61  ARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDAL 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           PG+QARLMSQALRKLT+SI++S  +++FINQ+RM
Sbjct: 121 PGLQARLMSQALRKLTASINKSNTMVIFINQIRM 154


>gi|255989409|gb|ACU51569.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
          Length = 150

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 123/150 (82%), Positives = 142/150 (94%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +
Sbjct: 1   GSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPV 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+S
Sbjct: 61  YARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDS 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFI 200
           LPG+QARLMSQALRKLT+SIS+S  +++F+
Sbjct: 121 LPGLQARLMSQALRKLTASISKSNTMVIFV 150


>gi|213012456|gb|ACJ38794.1| recombination-repair protein [Vibrio sp. R-651]
          Length = 178

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 122/175 (69%), Positives = 156/175 (89%)

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+
Sbjct: 1   QREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVV 60

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSV+ALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMF
Sbjct: 61  DSVSALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMF 120

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           G+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ 
Sbjct: 121 GNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEA 175


>gi|220960994|gb|ACL92963.1| recombinase A [Streptomyces ramulosus]
 gi|220961018|gb|ACL92975.1| recombinase A [Streptomyces catenulae]
          Length = 168

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 123/168 (73%), Positives = 148/168 (88%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD  YA+KL
Sbjct: 1   DVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYAKKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD   L++SQPD GEQALEITDMLVRSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+Q
Sbjct: 61  GVDTDALILSQPDNGEQALEITDMLVRSGALDLIVIDSVAALVPKAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|260748927|gb|ACX48769.1| recombinase protein A [Mesorhizobium sp. AC99a]
          Length = 134

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 101/134 (75%), Positives = 120/134 (89%), Gaps = 1/134 (0%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           SQI+R +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGK
Sbjct: 2   SQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGK 60

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D L
Sbjct: 61  TTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTL 120

Query: 141 VRSGAVDIIVIDSV 154
           VRSGA+D++V+DSV
Sbjct: 121 VRSGAIDVLVVDSV 134


>gi|289190660|gb|ADC93435.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-7]
          Length = 162

 Score =  163 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 123/163 (75%), Positives = 144/163 (88%), Gaps = 1/163 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG +      IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK
Sbjct: 1   KLG-KSDRSMDIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQK 59

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDS
Sbjct: 60  KGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDS 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           VAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S  +
Sbjct: 120 VAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTM 162


>gi|255989401|gb|ACU51565.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
          Length = 150

 Score =  163 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 123/150 (82%), Positives = 141/150 (94%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +
Sbjct: 1   GSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPV 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+S
Sbjct: 61  YARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDS 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFI 200
           LPG+QARLMSQALRKLT+SIS+S  +++F 
Sbjct: 121 LPGLQARLMSQALRKLTASISKSNTMVIFT 150


>gi|193227233|emb|CAQ17085.1| recombinase A [Ensifer adhaerens]
 gi|193227235|emb|CAQ17086.1| recombinase A [Ensifer adhaerens]
 gi|193227237|emb|CAQ17087.1| recombinase A [Ensifer adhaerens]
          Length = 149

 Score =  163 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 119/149 (79%), Positives = 136/149 (91%), Gaps = 1/149 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL T+
Sbjct: 1   KGSIMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTV 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+
Sbjct: 60  AEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           +V+DSVAAL PRAEIEG+MG++LPGMQAR
Sbjct: 120 LVVDSVAALVPRAEIEGEMGDNLPGMQAR 148


>gi|25808161|gb|AAN74145.1| RecA [Helicobacter pylori]
          Length = 185

 Score =  163 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 121/185 (65%), Positives = 154/185 (83%), Gaps = 1/185 (0%)

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           I+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPD
Sbjct: 1   IIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPD 60

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T 
Sbjct: 61  TGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITG 120

Query: 189 SISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
            + +    L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   G
Sbjct: 121 VLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIG 180

Query: 248 NQTRV 252
           N+ + 
Sbjct: 181 NRAKA 185


>gi|62637703|gb|AAX92556.1| recombination protein A [Rhizobium etli bv. phaseoli]
 gi|62637705|gb|AAX92557.1| recombination protein A [Rhizobium etli bv. phaseoli]
 gi|62637707|gb|AAX92558.1| recombination protein A [Rhizobium etli bv. phaseoli]
 gi|62637709|gb|AAX92559.1| recombination protein A [Rhizobium etli bv. phaseoli]
 gi|62637711|gb|AAX92560.1| recombination protein A [Rhizobium etli bv. phaseoli]
 gi|62637713|gb|AAX92561.1| recombination protein A [Rhizobium etli bv. phaseoli]
 gi|62637715|gb|AAX92562.1| recombination protein A [Rhizobium etli bv. phaseoli]
 gi|62637717|gb|AAX92563.1| recombination protein A [Rhizobium etli bv. phaseoli]
 gi|62637719|gb|AAX92564.1| recombination protein A [Rhizobium etli bv. phaseoli]
 gi|62637723|gb|AAX92566.1| recombination protein A [Rhizobium etli bv. phaseoli]
 gi|62637725|gb|AAX92567.1| recombination protein A [Rhizobium etli bv. mimosae]
 gi|62637727|gb|AAX92568.1| recombination protein A [Rhizobium etli bv. phaseoli]
          Length = 148

 Score =  163 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 124/148 (83%), Positives = 140/148 (94%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSLGLDIALG+GG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL
Sbjct: 1   ISTGSLGLDIALGVGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+M
Sbjct: 61  DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKC 195
           G+SLPG+QARLMSQALRKLT+SIS+S  
Sbjct: 121 GDSLPGLQARLMSQALRKLTASISKSNT 148


>gi|207080823|gb|ACI22755.1| RecA [Agrobacterium sp. J3-19]
          Length = 154

 Score =  162 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 124/155 (80%), Positives = 141/155 (90%), Gaps = 1/155 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LG+   I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA+
Sbjct: 1   SVMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGEQALEITD LVRSGA+D++V
Sbjct: 60  AQKKGGVCAFVDAEHALDPVYARKLGVDLQGLLISQPDTGEQALEITDTLVRSGAIDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           IDSVAALTP+AEIEG+MG+SLPGMQARLMSQALRK
Sbjct: 120 IDSVAALTPKAEIEGEMGDSLPGMQARLMSQALRK 154


>gi|325512811|gb|ADZ23594.1| RecA [Bradyrhizobium elkanii]
          Length = 154

 Score =  162 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 118/154 (76%), Positives = 142/154 (92%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           GLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YAR
Sbjct: 1   GLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYAR 60

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
           KLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG
Sbjct: 61  KLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPG 120

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +QARLMSQALRKLT+SI++S  +++FINQ+RMKI
Sbjct: 121 LQARLMSQALRKLTASINKSHTMVIFINQIRMKI 154


>gi|325512767|gb|ADZ23572.1| RecA [Sinorhizobium sp. CCBAU 25426]
          Length = 154

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 129/154 (83%), Positives = 145/154 (94%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           LGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YA
Sbjct: 1   LGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           RKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLP
Sbjct: 61  RKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLP 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           GMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 121 GMQARLMSQALRKLTASISKSNCMVIFINQIRMK 154


>gi|325512831|gb|ADZ23604.1| RecA [Sinorhizobium fredii]
          Length = 154

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 130/154 (84%), Positives = 145/154 (94%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           LGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYA
Sbjct: 1   LGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYA 60

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           RKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLP
Sbjct: 61  RKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLP 120

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           GMQARLMSQALRKLT+SIS+S C+++FINQ+RMK
Sbjct: 121 GMQARLMSQALRKLTASISKSNCMVIFINQIRMK 154


>gi|300521783|gb|ADK26073.1| RecA protein [Vibrio communis]
          Length = 177

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 124/177 (70%), Positives = 156/177 (88%)

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSV
Sbjct: 1   GKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSV 60

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+P
Sbjct: 61  AALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNP 120

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           ETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IM
Sbjct: 121 ETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIM 177


>gi|152143447|gb|ABS29459.1| RecA [Rhizobium fabae]
 gi|152143449|gb|ABS29460.1| RecA [Rhizobium fabae]
 gi|152143451|gb|ABS29461.1| RecA [Rhizobium fabae]
 gi|152143453|gb|ABS29462.1| RecA [Rhizobium fabae]
 gi|152143455|gb|ABS29463.1| RecA [Rhizobium fabae]
 gi|152143457|gb|ABS29464.1| RecA [Rhizobium fabae]
 gi|255989343|gb|ACU51536.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989347|gb|ACU51538.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989349|gb|ACU51539.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989351|gb|ACU51540.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989353|gb|ACU51541.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989355|gb|ACU51542.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989357|gb|ACU51543.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989359|gb|ACU51544.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989361|gb|ACU51545.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989363|gb|ACU51546.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989365|gb|ACU51547.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989367|gb|ACU51548.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989369|gb|ACU51549.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989371|gb|ACU51550.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989373|gb|ACU51551.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989375|gb|ACU51552.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989377|gb|ACU51553.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989379|gb|ACU51554.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989381|gb|ACU51555.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989383|gb|ACU51556.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989385|gb|ACU51557.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989387|gb|ACU51558.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989389|gb|ACU51559.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989391|gb|ACU51560.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989393|gb|ACU51561.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989397|gb|ACU51563.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989399|gb|ACU51564.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989403|gb|ACU51566.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989405|gb|ACU51567.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989411|gb|ACU51570.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989413|gb|ACU51571.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989415|gb|ACU51572.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
          Length = 149

 Score =  162 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 123/149 (82%), Positives = 141/149 (94%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +
Sbjct: 1   GSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPV 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+S
Sbjct: 61  YARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDS 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVF 199
           LPG+QARLMSQALRKLT+SIS+S  +++F
Sbjct: 121 LPGLQARLMSQALRKLTASISKSNTMVIF 149


>gi|126797728|gb|ABO27385.1| RecA protein [Agrobacterium rhizogenes]
          Length = 150

 Score =  162 bits (409), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 123/151 (81%), Positives = 139/151 (92%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAALTPRAEIEG+MG+SLPG+QARLMSQAL
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQAL 150


>gi|89515216|gb|ABD75437.1| RecA [Sinorhizobium americanum]
 gi|126797670|gb|ABO27356.1| RecA protein [Sinorhizobium americanum]
 gi|126797672|gb|ABO27357.1| RecA protein [Sinorhizobium americanum]
 gi|126797702|gb|ABO27372.1| RecA protein [Sinorhizobium saheli]
          Length = 150

 Score =  162 bits (409), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 124/151 (82%), Positives = 140/151 (92%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A++Q
Sbjct: 1   MKLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAAL PRAEIEG+MG+SLPGMQARLMSQAL
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150


>gi|49036406|gb|AAT48872.1| RecA [Campylobacter fetus subsp. fetus]
          Length = 167

 Score =  162 bits (409), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 116/169 (68%), Positives = 136/169 (80%), Gaps = 2/169 (1%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
            ++++G +    E I+ +SSGS+GLDIALGIGG PKGRIVEIYGPESSGKTTL LH IA+
Sbjct: 1   TVLRIGDKE--IEPIDSISSGSIGLDIALGIGGVPKGRIVEIYGPESSGKTTLTLHLIAE 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           SQK GG CAFVDAEHALD  YA+ LGVD  NL ISQPD GEQAL+I + L RSGAVD+IV
Sbjct: 59  SQKVGGVCAFVDAEHALDVKYAKNLGVDTDNLYISQPDFGEQALDIVETLARSGAVDLIV 118

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           IDSVAALTP++EIEGDMG+   G+QARLMSQALRKLT  + +    +VF
Sbjct: 119 IDSVAALTPKSEIEGDMGDQHVGLQARLMSQALRKLTGVVHKMGTTVVF 167


>gi|62637691|gb|AAX92550.1| recombination protein A [Rhizobium gallicum bv. gallicum]
 gi|62637693|gb|AAX92551.1| recombination protein A [Rhizobium gallicum bv. gallicum]
 gi|62637695|gb|AAX92552.1| recombination protein A [Rhizobium gallicum bv. gallicum]
 gi|62637697|gb|AAX92553.1| recombination protein A [Rhizobium gallicum bv. gallicum]
 gi|62637699|gb|AAX92554.1| recombination protein A [Rhizobium gallicum bv. gallicum]
 gi|62637701|gb|AAX92555.1| recombination protein A [Rhizobium gallicum bv. gallicum]
          Length = 148

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 124/148 (83%), Positives = 139/148 (93%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL
Sbjct: 1   ISTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+M
Sbjct: 61  DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKC 195
           G+SLPG+QARLMSQALRKLT+SIS+S  
Sbjct: 121 GDSLPGLQARLMSQALRKLTASISKSNT 148


>gi|300521777|gb|ADK26070.1| RecA protein [Vibrio communis]
 gi|300521779|gb|ADK26071.1| RecA protein [Vibrio communis]
          Length = 176

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 123/176 (69%), Positives = 155/176 (88%)

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSV
Sbjct: 1   GKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSV 60

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+P
Sbjct: 61  AALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNP 120

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           ETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 121 ETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 176


>gi|225008766|gb|ACN78931.1| RecA [Rhizobium sp. MITP02]
          Length = 151

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 124/152 (81%), Positives = 141/152 (92%), Gaps = 1/152 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LGS  ++ E IE +S+GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLAL TIA++QK 
Sbjct: 1   LGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALQTIAEAQKK 59

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSV
Sbjct: 60  GGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSV 119

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           AALTPRAEIEG+MG++LPG+QARLMSQALRKL
Sbjct: 120 AALTPRAEIEGEMGDNLPGLQARLMSQALRKL 151


>gi|325512789|gb|ADZ23583.1| RecA [Sinorhizobium fredii]
          Length = 154

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 130/154 (84%), Positives = 145/154 (94%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           GLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYAR
Sbjct: 1   GLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYAR 60

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
           KLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPG
Sbjct: 61  KLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPG 120

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           MQARLMSQALRKLT+SIS+S C+++FINQ+RMKI
Sbjct: 121 MQARLMSQALRKLTASISKSNCMVIFINQIRMKI 154


>gi|318084956|gb|ADV39368.1| recombinase A [Streptomyces lavendulocolor]
          Length = 168

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 125/168 (74%), Positives = 147/168 (87%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALG+ G P+GR+VEIYGPESSGKTTL LH +A +QK GG  AFVDAEHALD  YA+KL
Sbjct: 1   DVALGVRGLPRGRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAQKL 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+TS++++SK   +FINQ+R KIGVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168


>gi|158905831|gb|ABW82565.1| RecA [Bradyrhizobiaceae bacterium NS1]
          Length = 148

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 117/148 (79%), Positives = 137/148 (92%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           EVVSSGSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALH +A++QK GG CAFVDAEH
Sbjct: 1   EVVSSGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHCVAEAQKKGGICAFVDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGV++  LLISQPD GEQALEI D LVRSGAVD+++IDSVAAL PRAE+EG
Sbjct: 61  ALDPVYARKLGVNVDELLISQPDHGEQALEIADTLVRSGAVDVLIIDSVAALVPRAELEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRS 193
           +MG++LPG+QARLMSQALRKLT+SI++S
Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKS 148


>gi|117530179|ref|YP_851022.1| recA recombinase [Microcystis phage Ma-LMM01]
 gi|117165791|dbj|BAF36099.1| recA recombinase [Microcystis phage Ma-LMM01]
          Length = 354

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 110/337 (32%), Positives = 178/337 (52%), Gaps = 28/337 (8%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LGS  SI E    + SG   LD  LG GG+P G+IVEI G  S GKTTL    ++  Q  
Sbjct: 31  LGSTSSI-EPTTFIPSGIFSLDYVLG-GGWPVGKIVEIAGETSVGKTTLMKQCVSLLQAK 88

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           G   A++D E + +  YAR +G+ +  + + +PDTGE+ ++    L+ SG V I+VIDSV
Sbjct: 89  GYMAAWLDHEKSFEVGYARMMGMQMDQIAMFRPDTGEEGMDSLITLLGSGLVKIVVIDSV 148

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           A +    E+E    ++     ARL+S+ L ++ ++ S++   +V INQ R K+G  +G+P
Sbjct: 149 ANMISAVEVEKGSADATVAQLARLLSKKLPQVVNAASKTGATVVLINQYRTKVGS-YGAP 207

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG- 273
             +TGG AL + ++V+L + R   +K +  ITG    VK  KN++A PF++ E D++   
Sbjct: 208 VGSTGGKALAYNAAVQLRLGRGDPLKQRGVITGMTITVKNTKNRVAIPFREAELDLLLPY 267

Query: 274 --------EGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
                    G+   G+++   VK  IV +SGA+++       QG    +  +  N  + +
Sbjct: 268 TGPNGDLLAGVDLVGDIVRQAVKTGIVSRSGAFYTLPDGSKFQGLAAVRAGI--NQSVLD 325

Query: 326 NIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           +I S L +               + +D+A  DDT+  
Sbjct: 326 SIYSQLSE--------------YDKQDNAAGDDTEET 348


>gi|126797726|gb|ABO27384.1| RecA protein [Agrobacterium rhizogenes]
          Length = 150

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 124/151 (82%), Positives = 139/151 (92%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VID
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAALTPRAEIEG+MG+SLPG+QARLMSQAL
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQAL 150


>gi|148828450|gb|ABR13876.1| RecA [Dickeya sp. 2187]
          Length = 171

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 126/171 (73%), Positives = 151/171 (88%)

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQ
Sbjct: 1   GRIVEIYGPESSGKTTLTLQVIAAAQRGGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQ 60

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL
Sbjct: 61  PDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 120

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
             ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G
Sbjct: 121 AGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIG 171


>gi|148828448|gb|ABR13875.1| RecA [Dickeya sp. 980]
          Length = 171

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 127/171 (74%), Positives = 151/171 (88%)

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQ
Sbjct: 1   GRIVEIYGPESSGKTTLTLQVIAAAQRGGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQ 60

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL
Sbjct: 61  PDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 120

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
             ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G
Sbjct: 121 AGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIG 171


>gi|126797712|gb|ABO27377.1| RecA protein [Sinorhizobium sp. BR816]
          Length = 150

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 124/151 (82%), Positives = 140/151 (92%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A++Q
Sbjct: 1   MKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAAL PRAEIEG+MG+SLPGMQARLMSQAL
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150


>gi|20513228|emb|CAD30717.1| glutamine synthetase 1 [Mesorhizobium sp. HB5A4]
 gi|20513230|emb|CAD30718.1| glutamine synthetase 1 [Mesorhizobium sp. HN15B23]
          Length = 461

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 116/147 (78%), Positives = 134/147 (91%), Gaps = 1/147 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++QK 
Sbjct: 315 LGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQKK 373

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSV
Sbjct: 374 GGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSV 433

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQ 181
           AALTPRAEIEG+MG+SLPG+QARLMSQ
Sbjct: 434 AALTPRAEIEGEMGDSLPGLQARLMSQ 460


>gi|117573490|gb|ABK40921.1| recombinase [Pseudomonas sp. C6-16]
 gi|117573494|gb|ABK40923.1| recombinase [Pseudomonas sp. S7-29]
          Length = 155

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 115/157 (73%), Positives = 134/157 (85%), Gaps = 2/157 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           GA+M++G Q    + I  +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L  IA
Sbjct: 1   GAVMRMGDQDR--QAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           Q+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I
Sbjct: 59  QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVI 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           ++DSVAAL P+AEIEG+MG+   G+QARLMSQALRK+
Sbjct: 119 IVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKI 155


>gi|20513218|emb|CAD30712.1| glutamine synthetase 1 [Mesorhizobium sp. ZJ15B7]
          Length = 461

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 116/147 (78%), Positives = 134/147 (91%), Gaps = 1/147 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++QK 
Sbjct: 315 LGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQKK 373

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSV
Sbjct: 374 GGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSV 433

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQ 181
           AALTPRAEIEG+MG+SLPG+QARLMSQ
Sbjct: 434 AALTPRAEIEGEMGDSLPGLQARLMSQ 460


>gi|163749986|ref|ZP_02157230.1| recombinase A [Shewanella benthica KT99]
 gi|161330260|gb|EDQ01241.1| recombinase A [Shewanella benthica KT99]
          Length = 155

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 90/159 (56%), Positives = 120/159 (75%), Gaps = 9/159 (5%)

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+TRVKVVKNK+A+PFK
Sbjct: 1   MKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKNGDEVIGNETRVKVVKNKIAAPFK 60

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           Q EF I+YG+GI+  GEL+DLGV   +V+K+GAW+S+KG ++GQGR N+  +L E+ EI+
Sbjct: 61  QAEFQILYGKGINRTGELVDLGVIHKLVEKAGAWYSYKGNKIGQGRANAGKYLIEHPEIS 120

Query: 325 ENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
             IE+ LR         LL  P  +  + A  D+  ++E
Sbjct: 121 AEIETKLR-------SMLLASP--DATESAKSDENVDLE 150


>gi|117667642|gb|ABK55867.1| recombinase A [Nocardiopsis dassonvillei subsp. dassonvillei]
          Length = 168

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 120/168 (71%), Positives = 144/168 (85%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG  AFVDAEHALD  YA+K+
Sbjct: 1   DVALGIGGLPRGRVVEIYGPESSGKTTVALHAVASAQRMGGIAAFVDAEHALDPEYAKKI 60

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GV+  +LL+SQPDTGEQALEI DML+RSGAV IIVIDSVAAL PRAEIEG+MG+S  G+Q
Sbjct: 61  GVNTDDLLLSQPDTGEQALEIVDMLIRSGAVSIIVIDSVAALVPRAEIEGEMGDSHVGLQ 120

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           ARLMSQALRK+  ++ ++    +FINQ+R K+GVMFGSPETTTGG AL
Sbjct: 121 ARLMSQALRKIAGALHQTNTTAIFINQLREKVGVMFGSPETTTGGKAL 168


>gi|301601060|dbj|BAJ13219.1| RecA [Agrobacterium vitis]
          Length = 160

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 126/149 (84%), Positives = 139/149 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDA
Sbjct: 12  KVETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGVCAFVDA 71

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTP+AEI
Sbjct: 72  EHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPKAEI 131

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISR 192
           EG+MG+SLPGMQARLMSQALRKLT SISR
Sbjct: 132 EGEMGDSLPGMQARLMSQALRKLTGSISR 160


>gi|126797700|gb|ABO27371.1| RecA protein [Sinorhizobium saheli]
          Length = 150

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 123/151 (81%), Positives = 140/151 (92%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A++Q
Sbjct: 1   MKLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAAL PRAEIEG+MG++LPGMQARLMSQAL
Sbjct: 120 SVAALVPRAEIEGEMGDNLPGMQARLMSQAL 150


>gi|33087849|gb|AAP93055.1| recombination protein A [Yersinia kristensenii]
          Length = 155

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 107/155 (69%), Positives = 129/155 (83%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEH
Sbjct: 1   ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG
Sbjct: 61  ALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEG 120

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           ++G+S  G+ AR+MSQA+RKL  ++  +  +L+FI
Sbjct: 121 EIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFI 155


>gi|301601081|dbj|BAJ13229.1| RecA [Agrobacterium vitis]
          Length = 159

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 126/157 (80%), Positives = 143/157 (91%), Gaps = 1/157 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG+   I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK
Sbjct: 1   KLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQK 59

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDS
Sbjct: 60  KGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVIDS 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           VAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT+ +
Sbjct: 120 VAALTPKAEIEGEMGDSLPGMQARLMSQALRKLTARL 156


>gi|325651047|emb|CBY89345.1| RecA protein [Bradyrhizobium sp. R-46173=t242]
          Length = 151

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 114/152 (75%), Positives = 133/152 (87%), Gaps = 1/152 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+
Sbjct: 1   KGSVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTV 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD+
Sbjct: 60  AEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +VIDSVAAL P+AE+EG+MG++LPG+QARLMS
Sbjct: 120 LVIDSVAALVPKAELEGEMGDALPGLQARLMS 151


>gi|20513242|emb|CAD30724.1| glutamine synthetase II [Mesorhizobium sp. HB5A4]
 gi|20513244|emb|CAD30725.1| glutamine synthetase II [Mesorhizobium sp. HN15B23]
          Length = 423

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 116/147 (78%), Positives = 134/147 (91%), Gaps = 1/147 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++QK 
Sbjct: 277 LGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQKK 335

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSV
Sbjct: 336 GGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSV 395

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQ 181
           AALTPRAEIEG+MG+SLPG+QARLMSQ
Sbjct: 396 AALTPRAEIEGEMGDSLPGLQARLMSQ 422


>gi|180050837|gb|ACB87032.1| RecA [Bacteriovorax sp. JS7]
          Length = 150

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 111/152 (73%), Positives = 129/152 (84%), Gaps = 3/152 (1%)

Query: 27  YGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
           +GKGAIM+L G Q  +     V+S+G LGLD+ALG+GG PKGRI+EIYGPESSGKTTL L
Sbjct: 1   FGKGAIMRLDGDQPQV--KTPVISTGCLGLDLALGVGGIPKGRIIEIYGPESSGKTTLTL 58

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
           H  AQ QK GGT AFVDAEHALD+ YA KLGVD+ N LISQPD+GEQALEITDMLVRSGA
Sbjct: 59  HIAAQCQKQGGTVAFVDAEHALDTTYAAKLGVDIPNTLISQPDSGEQALEITDMLVRSGA 118

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           VD++++DSVAALTPRAE+EGDMG+S  G+QAR
Sbjct: 119 VDLLIVDSVAALTPRAELEGDMGDSHMGLQAR 150


>gi|212286486|dbj|BAG82892.1| RecA protein [Rhizobium sp. Sl-Nf10]
          Length = 145

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 115/145 (79%), Positives = 132/145 (91%), Gaps = 1/145 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YAR+LGVDL+NL ISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARRLGVDLQNLWISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQAR 177
           SVAALTPRAEIEG+MG+SLPG+QAR
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQAR 144


>gi|20513234|emb|CAD30720.1| glutamine synthetase II [Mesorhizobium sp. HN8A1]
 gi|20513238|emb|CAD30722.1| glutamine synthetase II [Mesorhizobium sp. JS5A15]
          Length = 423

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 116/147 (78%), Positives = 134/147 (91%), Gaps = 1/147 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++QK 
Sbjct: 277 LGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQKK 335

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSV
Sbjct: 336 GGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSV 395

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQ 181
           AALTPRAEIEG+MG+SLPG+QARLMSQ
Sbjct: 396 AALTPRAEIEGEMGDSLPGLQARLMSQ 422


>gi|126797724|gb|ABO27383.1| RecA protein [Rhizobium galegae]
          Length = 150

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 126/151 (83%), Positives = 138/151 (91%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  +I E IE VS+GSL LDIALGIGG PKGRI EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNDNIVE-IETVSTGSLSLDIALGIGGLPKGRIFEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++VID
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAALTPRAEIEG+MG+SLPG+QARLMSQAL
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQAL 150


>gi|213950716|gb|ACJ54603.1| recombination protein A [Bradyrhizobium japonicum]
          Length = 151

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 110/150 (73%), Positives = 131/150 (87%), Gaps = 1/150 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+
Sbjct: 3   KGSIMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTV 61

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD+
Sbjct: 62  AEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDV 121

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +V+DSVAAL P+AE+EG+MG++LPG+QA+ 
Sbjct: 122 LVVDSVAALVPKAELEGEMGDALPGLQAQP 151


>gi|126797720|gb|ABO27381.1| RecA protein [Sinorhizobium sp. Lc56]
          Length = 150

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 123/151 (81%), Positives = 140/151 (92%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A++Q
Sbjct: 1   MKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGV+L+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVNLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAAL PRAEIEG+MG+SLPGMQARLMSQAL
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150


>gi|117573482|gb|ABK40917.1| recombinase [Pseudomonas sp. S7-46]
 gi|117573492|gb|ABK40922.1| recombinase [Pseudomonas sp. C6-9]
          Length = 153

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 114/155 (73%), Positives = 132/155 (85%), Gaps = 2/155 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           GA+M++G Q    + I  +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L  IA
Sbjct: 1   GAVMRMGDQDR--QAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA 58

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           Q+QK G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I
Sbjct: 59  QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVI 118

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           ++DSVAAL P+AEIEG+MG+   G+QARLMSQALR
Sbjct: 119 IVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALR 153


>gi|160375130|gb|ABX38946.1| recombinase protein A [Mesorhizobium tianshanense]
          Length = 132

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 103/133 (77%), Positives = 120/133 (90%), Gaps = 1/133 (0%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG+   + E IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALH
Sbjct: 1   FGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALH 59

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+
Sbjct: 60  TVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAI 119

Query: 147 DIIVIDSVAALTP 159
           D++V+DSVAALTP
Sbjct: 120 DVLVVDSVAALTP 132


>gi|126797682|gb|ABO27362.1| RecA protein [Sinorhizobium kostiense]
 gi|126797684|gb|ABO27363.1| RecA protein [Sinorhizobium kostiense]
 gi|126797718|gb|ABO27380.1| RecA protein [Sinorhizobium sp. Le39]
          Length = 150

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 124/151 (82%), Positives = 139/151 (92%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAAL PRAEIEG+MG+SLPGMQARLMSQAL
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150


>gi|301601093|dbj|BAJ13235.1| RecA [Agrobacterium vitis]
          Length = 160

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 127/155 (81%), Positives = 141/155 (90%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           +  I   +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG 
Sbjct: 6   EREIDVEVETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGV 65

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAAL
Sbjct: 66  CAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAAL 125

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           TP+AEIEG+MG+SLPGMQARLMSQALRKLT SISR
Sbjct: 126 TPKAEIEGEMGDSLPGMQARLMSQALRKLTGSISR 160


>gi|301601062|dbj|BAJ13220.1| RecA [Agrobacterium vitis]
          Length = 159

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 126/149 (84%), Positives = 139/149 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDA
Sbjct: 11  EVETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGVCAFVDA 70

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTP+AEI
Sbjct: 71  EHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPKAEI 130

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISR 192
           EG+MG+SLPGMQARLMSQALRKLT SISR
Sbjct: 131 EGEMGDSLPGMQARLMSQALRKLTGSISR 159


>gi|299737730|gb|ADJ37188.1| recombinase A [Burkholderia sp. s25]
          Length = 158

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 119/158 (75%), Positives = 141/158 (89%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  
Sbjct: 1   GSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQ 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+S
Sbjct: 61  YAGKLGVNVNDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDS 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           LPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG
Sbjct: 121 LPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 158


>gi|213950712|gb|ACJ54601.1| recombination protein A [Sinorhizobium fredii]
          Length = 145

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 120/146 (82%), Positives = 134/146 (91%), Gaps = 1/146 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA
Sbjct: 1   GSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           ++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++
Sbjct: 60  EAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVL 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQ 175
           V+DSVAAL PRAEIEG+MG+SLPGMQ
Sbjct: 120 VVDSVAALVPRAEIEGEMGDSLPGMQ 145


>gi|148840348|gb|ABR14605.1| RecA [Rhizobium undicola]
          Length = 150

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 122/151 (80%), Positives = 138/151 (91%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG+   + E I+ VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGANEKVVE-IDTVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAALTPRAEIEG+MG+SLPGMQARLMSQAL
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGMQARLMSQAL 150


>gi|313670312|gb|ADR73347.1| recombination protein A [Bradyrhizobium jicamae]
          Length = 154

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 113/153 (73%), Positives = 135/153 (88%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           +      IE VS+GSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALH +A+ Q+ GG 
Sbjct: 2   KNDRSMDIETVSTGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHCVAEGQRKGGI 61

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGA+D++V+DSVAAL
Sbjct: 62  CAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAAL 121

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
            P+AE+EG+MG++LPG+QARLMSQALRKLT+SI
Sbjct: 122 VPKAELEGEMGDALPGLQARLMSQALRKLTASI 154


>gi|325651051|emb|CBY89347.1| RecA protein [Bradyrhizobium sp. R-46210=t414]
          Length = 150

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 113/151 (74%), Positives = 132/151 (87%), Gaps = 1/151 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG++M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+
Sbjct: 1   KGSVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTV 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD+
Sbjct: 60  AEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
           +VIDSVAAL P+AE+EG+MG++LPG+QARLM
Sbjct: 120 LVIDSVAALVPKAELEGEMGDALPGLQARLM 150


>gi|158315583|ref|YP_001508091.1| RecA domain-containing protein [Frankia sp. EAN1pec]
 gi|158110988|gb|ABW13185.1| RecA domain protein [Frankia sp. EAN1pec]
          Length = 274

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 59/133 (44%), Positives = 85/133 (63%)

Query: 220 GNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFF 279
             + +F   VR D+RR+ ++KD      N+TRVKVV+NKMA PF+  EFDI+YG GIS  
Sbjct: 25  QPSCRFSQPVRHDVRRIETLKDGQEAVANRTRVKVVRNKMAPPFRMAEFDIVYGGGISRE 84

Query: 280 GELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           G LID+GV+ +I+ KSGAW++  G +LGQG+EN++ FLR+N ++A   E  +++  GL  
Sbjct: 85  GSLIDMGVEHTIIRKSGAWYTDDGDQLGQGKENARSFLRDNPDLANETEKRIKEKLGLSP 144

Query: 340 DSLLQEPAINTKD 352
                 P     D
Sbjct: 145 TLDADAPPPVAVD 157


>gi|126797676|gb|ABO27359.1| RecA protein [Sinorhizobium fredii]
          Length = 150

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 124/151 (82%), Positives = 139/151 (92%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGR++EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRVIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAAL PRAEIEG+MG+SLPGMQARLMSQAL
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150


>gi|20513246|emb|CAD30726.1| DNA recombinase A [Mesorhizobium sp. ZJ15B7]
 gi|20513248|emb|CAD30727.1| DNA recombinase A [Mesorhizobium sp. HN8A1]
 gi|20513250|emb|CAD30728.1| DNA recombinase A [Mesorhizobium sp. JX2B5]
 gi|20513252|emb|CAD30729.1| DNA recombinase A [Mesorhizobium sp. HN14A16]
 gi|20513254|emb|CAD30730.1| DNA recombinase A [Mesorhizobium sp. HB5A4]
 gi|20513256|emb|CAD30731.1| DNA recombinase A [Mesorhizobium sp. JS5A15]
 gi|20513258|emb|CAD30732.1| DNA recombinase A [Mesorhizobium sp. HN15B23]
          Length = 147

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 116/147 (78%), Positives = 134/147 (91%), Gaps = 1/147 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++QK 
Sbjct: 1   LGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQKK 59

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSV
Sbjct: 60  GGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSV 119

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQ 181
           AALTPRAEIEG+MG+SLPG+QARLMSQ
Sbjct: 120 AALTPRAEIEGEMGDSLPGLQARLMSQ 146


>gi|212286551|dbj|BAG82918.1| RecA protein [Rhizobium sp. 28949]
          Length = 145

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 116/145 (80%), Positives = 132/145 (91%), Gaps = 1/145 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  ++ E IE VS+GSL LDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENVVE-IETVSTGSLSLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL NLLISQPDTGEQALEITD LVRSGAVD++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLHNLLISQPDTGEQALEITDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQAR 177
           SVAALTPRAEIEG+MG+SLPG+QAR
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQAR 144


>gi|255989407|gb|ACU51568.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
          Length = 149

 Score =  160 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 122/148 (82%), Positives = 140/148 (94%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +
Sbjct: 1   GSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPV 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+S
Sbjct: 61  YARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDS 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILV 198
           LPG+QARLMSQALRKLT+SIS+S  +++
Sbjct: 121 LPGLQARLMSQALRKLTASISKSNTMVI 148


>gi|89515226|gb|ABD75442.1| RecA [Sinorhizobium terangae]
 gi|89515228|gb|ABD75443.1| RecA [Sinorhizobium terangae]
 gi|89515230|gb|ABD75444.1| RecA [Sinorhizobium terangae]
 gi|89515232|gb|ABD75445.1| RecA [Ensifer mexicanus]
 gi|89515234|gb|ABD75446.1| RecA [Ensifer mexicanus]
 gi|89515236|gb|ABD75447.1| RecA [Ensifer mexicanus]
 gi|89515238|gb|ABD75448.1| RecA [Ensifer mexicanus]
 gi|89515240|gb|ABD75449.1| RecA [Ensifer mexicanus]
 gi|122939093|gb|ABM69128.1| RecA [Ensifer mexicanus]
 gi|122939095|gb|ABM69129.1| RecA [Ensifer mexicanus]
 gi|126797706|gb|ABO27374.1| RecA protein [Sinorhizobium terangae]
 gi|126797708|gb|ABO27375.1| RecA protein [Sinorhizobium terangae]
 gi|126797710|gb|ABO27376.1| RecA protein [Sinorhizobium terangae]
 gi|126797714|gb|ABO27378.1| RecA protein [Sinorhizobium fredii NGR234]
 gi|149393048|gb|ABR26586.1| DNA strand exchange and recombination protein [Sinorhizobium
           chiapanecum]
 gi|149393050|gb|ABR26587.1| DNA strand exchange and recombination protein [Sinorhizobium
           chiapanecum]
 gi|149393052|gb|ABR26588.1| DNA strand exchange and recombination protein [Sinorhizobium
           chiapanecum]
 gi|149393054|gb|ABR26589.1| DNA strand exchange and recombination protein [Sinorhizobium
           chiapanecum]
          Length = 150

 Score =  160 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 124/151 (82%), Positives = 139/151 (92%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAAL PRAEIEG+MG+SLPGMQARLMSQAL
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150


>gi|89515224|gb|ABD75441.1| RecA [Sinorhizobium kostiense]
          Length = 150

 Score =  159 bits (402), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 124/151 (82%), Positives = 139/151 (92%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAAL PRAEIEG+MG++LPGMQARLMSQAL
Sbjct: 120 SVAALVPRAEIEGEMGDNLPGMQARLMSQAL 150


>gi|89515218|gb|ABD75438.1| RecA [Sinorhizobium xinjiangense]
 gi|126797674|gb|ABO27358.1| RecA protein [Sinorhizobium xinjiangense]
 gi|126797716|gb|ABO27379.1| RecA protein [Sinorhizobium sp. GRX8]
          Length = 150

 Score =  159 bits (402), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 126/151 (83%), Positives = 139/151 (92%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAAL PRAEIEG+MG+SLPGMQARLMSQAL
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150


>gi|126797678|gb|ABO27360.1| RecA protein [Sinorhizobium arboris]
 gi|126797680|gb|ABO27361.1| RecA protein [Sinorhizobium arboris]
          Length = 150

 Score =  159 bits (402), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 123/151 (81%), Positives = 139/151 (92%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAAL PRAEIEG+MG+SLPGMQARLMSQAL
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150


>gi|299737728|gb|ADJ37187.1| recombinase A [Burkholderia sp. CCBAU 25371]
          Length = 157

 Score =  159 bits (402), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 118/157 (75%), Positives = 140/157 (89%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  
Sbjct: 1   GSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKIGGTAAFIDAEHALDIQ 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+S
Sbjct: 61  YAGKLGVNVNDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDS 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           LPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI
Sbjct: 121 LPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 157


>gi|212286460|dbj|BAG82882.1| RecA protein [Rhizobium sp. Sb1-Nf2]
          Length = 145

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 116/145 (80%), Positives = 133/145 (91%), Gaps = 1/145 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YAR+LGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARRLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQAR 177
           SVAALTPRAEIEG+MG+SLPG+QAR
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQAR 144


>gi|110798484|gb|ABG91009.1| recombination protein A [Sinorhizobium medicae]
 gi|110798486|gb|ABG91010.1| recombination protein A [Sinorhizobium medicae]
 gi|126797696|gb|ABO27369.1| RecA protein [Sinorhizobium medicae]
 gi|126797698|gb|ABO27370.1| RecA protein [Sinorhizobium medicae]
          Length = 150

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 125/151 (82%), Positives = 139/151 (92%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAAL PRAEIEG+MG+SLPGMQARLMSQAL
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150


>gi|89515222|gb|ABD75440.1| RecA [Sinorhizobium arboris LMG 14919]
          Length = 150

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 124/151 (82%), Positives = 139/151 (92%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAAL PRAEIEG+MG+SLPGMQARLMSQAL
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150


>gi|257812107|gb|ACV69921.1| RecA [Mesorhizobium robiniae]
          Length = 144

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 116/141 (82%), Positives = 131/141 (92%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDA
Sbjct: 4   EIETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDA 63

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEI
Sbjct: 64  EHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEI 123

Query: 164 EGDMGESLPGMQARLMSQALR 184
           EG+MG+SLPG+QARLMSQ LR
Sbjct: 124 EGEMGDSLPGLQARLMSQRLR 144


>gi|62637721|gb|AAX92565.1| recombination protein A [Rhizobium etli bv. phaseoli]
          Length = 148

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 122/148 (82%), Positives = 138/148 (93%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+GSLGLDIAL +GG PKGRI+E YGPESSGKTTLAL TIA++QK GG CAFVDAEHAL
Sbjct: 1   ISTGSLGLDIALRVGGLPKGRIIEFYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+M
Sbjct: 61  DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEM 120

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKC 195
           G+SLPG+QARLMSQALRKLT+SIS+S  
Sbjct: 121 GDSLPGLQARLMSQALRKLTASISKSNT 148


>gi|293337695|gb|ADE43123.1| recombinase A [Pseudomonas viridiflava]
          Length = 179

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 126/179 (70%), Positives = 156/179 (87%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+
Sbjct: 1   LDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGE 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY
Sbjct: 61  MGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFY 120

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           +SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+YG+GI   GE+IDL
Sbjct: 121 ASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEIIDL 179


>gi|255989339|gb|ACU51534.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
 gi|255989341|gb|ACU51535.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
          Length = 149

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 122/149 (81%), Positives = 140/149 (93%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GS GLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +
Sbjct: 1   GSGGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPV 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+S
Sbjct: 61  YARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDS 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVF 199
           LPG+QARLMSQALRKLT+SIS+S  +++F
Sbjct: 121 LPGLQARLMSQALRKLTASISKSNTMVIF 149


>gi|126797686|gb|ABO27364.1| RecA protein [Ensifer adhaerens]
 gi|126797688|gb|ABO27365.1| RecA protein [Sinorhizobium sp. CFN_EC1002]
          Length = 150

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 124/151 (82%), Positives = 138/151 (91%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG + SI E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL T+A++Q
Sbjct: 1   MKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTVAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAAL PRAEIEG+MG+SLPGMQARLMSQAL
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150


>gi|224174436|emb|CAR92636.1| recombinase A [Bradyrhizobium sp. LMG 10300]
 gi|224174438|emb|CAR92637.1| recombinase A [Bradyrhizobium sp. LMG 11807]
          Length = 147

 Score =  158 bits (400), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 110/147 (74%), Positives = 129/147 (87%), Gaps = 1/147 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LG        +E VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A+
Sbjct: 1   SVMKLGKNDRSM-DVETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V
Sbjct: 60  AQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQAR 177
           +DSVAAL P+AE+EG+MGESLPG+QAR
Sbjct: 120 VDSVAALVPKAELEGEMGESLPGLQAR 146


>gi|257812109|gb|ACV69922.1| RecA [Mesorhizobium robiniae]
          Length = 141

 Score =  158 bits (400), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 115/140 (82%), Positives = 130/140 (92%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDA
Sbjct: 2   EIETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDA 61

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEI
Sbjct: 62  EHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEI 121

Query: 164 EGDMGESLPGMQARLMSQAL 183
           EG+MG+SLPG+QARLMSQ L
Sbjct: 122 EGEMGDSLPGLQARLMSQRL 141


>gi|255989345|gb|ACU51537.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
          Length = 149

 Score =  158 bits (400), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 122/149 (81%), Positives = 140/149 (93%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGL IALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +
Sbjct: 1   GSLGLYIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPV 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+S
Sbjct: 61  YARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDS 120

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVF 199
           LPG+QARLMSQALRKLT+SIS+S  +++F
Sbjct: 121 LPGLQARLMSQALRKLTASISKSNTMVIF 149


>gi|110798476|gb|ABG91005.1| recombination protein A [Sinorhizobium meliloti]
 gi|110798478|gb|ABG91006.1| recombination protein A [Sinorhizobium meliloti]
 gi|110798480|gb|ABG91007.1| recombination protein A [Sinorhizobium meliloti]
 gi|110798482|gb|ABG91008.1| recombination protein A [Sinorhizobium meliloti]
 gi|126797690|gb|ABO27366.1| RecA protein [Sinorhizobium meliloti]
 gi|126797692|gb|ABO27367.1| RecA protein [Sinorhizobium kummerowiae]
          Length = 150

 Score =  158 bits (400), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 125/151 (82%), Positives = 139/151 (92%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VID
Sbjct: 60  KKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAAL PRAEIEG+MG+SLPGMQARLMSQAL
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150


>gi|212286546|dbj|BAG82916.1| RecA protein [Rhizobium sp. 15935]
 gi|212286556|dbj|BAG82920.1| RecA protein [Rhizobium sp. 29953]
          Length = 145

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 119/145 (82%), Positives = 132/145 (91%), Gaps = 1/145 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  ++ E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL NLLISQPDTGEQALEITD LVRSGAVD++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLHNLLISQPDTGEQALEITDTLVRSGAVDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQAR 177
           SVAALTPRAEIEG+MG+SLPG+QAR
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQAR 144


>gi|224174444|emb|CAR92640.1| recombinase A [Bradyrhizobium sp. LMG 11797]
 gi|224174446|emb|CAR92641.1| recombinase A [Bradyrhizobium sp. LMG 8300]
 gi|224174448|emb|CAR92642.1| recombinase A [Blastobacter denitrificans]
          Length = 147

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 108/147 (73%), Positives = 129/147 (87%), Gaps = 1/147 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LG        +E VS+GSLGLDIALGIGG PKGR++EIYGPESSGKTTLALHT+A+
Sbjct: 1   SVMKLGKNDRSM-DVETVSTGSLGLDIALGIGGLPKGRVIEIYGPESSGKTTLALHTVAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V
Sbjct: 60  AQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQAR 177
           +DSVAAL P+AE+EG+MGESLPG+QAR
Sbjct: 120 VDSVAALVPKAELEGEMGESLPGLQAR 146


>gi|293337681|gb|ADE43116.1| recombinase A [Pseudomonas fluorescens]
 gi|293337683|gb|ADE43117.1| recombinase A [Pseudomonas tolaasii]
 gi|293337685|gb|ADE43118.1| recombinase A [Pseudomonas tolaasii]
 gi|293337700|gb|ADE43124.1| recombinase A [Pseudomonas fluorescens]
          Length = 179

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 126/179 (70%), Positives = 156/179 (87%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+
Sbjct: 1   LDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGE 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY
Sbjct: 61  MGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFY 120

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           +SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+YG+GI   GE+IDL
Sbjct: 121 ASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDL 179


>gi|126797704|gb|ABO27373.1| RecA protein [Ensifer adhaerens]
          Length = 150

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 125/151 (82%), Positives = 138/151 (91%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG + SI E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VID
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAAL PRAEIEG+MG+SLPGMQARLMSQAL
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150


>gi|293337689|gb|ADE43120.1| recombinase A [Pseudomonas chlororaphis]
 gi|293337693|gb|ADE43122.1| recombinase A [Pseudomonas chlororaphis]
          Length = 179

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 126/179 (70%), Positives = 156/179 (87%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IVIDSVAAL P+AEIEG+
Sbjct: 1   LDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVIDSVAALVPKAEIEGE 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG+   G+QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY
Sbjct: 61  MGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFY 120

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
           +SVRLDIRR G++K+ D + G++TRVK+VKNK+A PF+Q EF I+YG+GI   GE+IDL
Sbjct: 121 ASVRLDIRRTGAVKEGDEVVGSETRVKIVKNKVAPPFRQAEFQILYGKGIYLNGEIIDL 179


>gi|38602329|emb|CAD58020.1| recombinase A [Acetobacter aceti]
          Length = 152

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 121/152 (79%), Positives = 139/152 (91%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGAVD++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT ++SRS  +LVF+
Sbjct: 1   VRSGAVDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGTVSRSNTLLVFL 60

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+R+KIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIKDKD + GNQTRVKVVKNKMA
Sbjct: 61  NQIRLKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKDKDEVVGNQTRVKVVKNKMA 120

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
            PF+QVEFDIMYGEGIS  GELIDLGVKA +V
Sbjct: 121 PPFRQVEFDIMYGEGISKMGELIDLGVKAGVV 152


>gi|29119655|emb|CAD79376.1| RecA protein [Burkholderia cepacia]
          Length = 147

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 104/148 (70%), Positives = 125/148 (84%), Gaps = 1/148 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLIS+PD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISRPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAA 156
           TGEQALEITD LVRSG++D+IVIDSVAA
Sbjct: 120 TGEQALEITDALVRSGSIDMIVIDSVAA 147


>gi|212286455|dbj|BAG82880.1| RecA protein [Rhizobium sp. Sb1-Nf1]
 gi|212286463|dbj|BAG82883.1| RecA protein [Rhizobium sp. Sb1-Nf13]
 gi|212286473|dbj|BAG82887.1| RecA protein [Rhizobium sp. Sb2-YG8]
 gi|212286478|dbj|BAG82889.1| RecA protein [Rhizobium sp. Sl-YG3]
 gi|212286481|dbj|BAG82890.1| RecA protein [Rhizobium sp. Sb2-Nf17]
 gi|212286491|dbj|BAG82894.1| RecA protein [Rhizobium sp. Sl-Nf13]
          Length = 145

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 117/145 (80%), Positives = 133/145 (91%), Gaps = 1/145 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  ++ E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQAR 177
           SVAALTPRAEIEG+MG+SLPG+QAR
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQAR 144


>gi|89515220|gb|ABD75439.1| RecA [Sinorhizobium kummerowiae]
 gi|126797694|gb|ABO27368.1| RecA protein [Sinorhizobium kummerowiae]
          Length = 150

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 126/151 (83%), Positives = 139/151 (92%), Gaps = 1/151 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VID
Sbjct: 60  KKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           SVAAL PRAEIEG+MG+SLPGMQARLMSQAL
Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150


>gi|212286506|dbj|BAG82900.1| RecA protein [Rhizobium sp. Pt2-S11]
          Length = 145

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 116/145 (80%), Positives = 132/145 (91%), Gaps = 1/145 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  ++   IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENVV-DIETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQAR 177
           SVAALTPRAEIEG+MG+SLPG+QAR
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQAR 144


>gi|257812105|gb|ACV69920.1| RecA [Mesorhizobium robiniae]
          Length = 144

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 115/140 (82%), Positives = 130/140 (92%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDA
Sbjct: 5   EIETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDA 64

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEI
Sbjct: 65  EHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEI 124

Query: 164 EGDMGESLPGMQARLMSQAL 183
           EG+MG+SLPG+QARLMSQ L
Sbjct: 125 EGEMGDSLPGLQARLMSQRL 144


>gi|2062105|emb|CAB08125.1| RecA [Mycobacterium leprae]
          Length = 131

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 79/127 (62%), Positives = 104/127 (81%), Gaps = 2/127 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+ KALE A++QI++ YGKG++M+LG +  + + I V+ +GS+ LD+ALGIGG P+GR
Sbjct: 4   VPDREKALELAMAQIEKNYGKGSVMRLGDE--MCQPISVIPTGSIALDVALGIGGLPRGR 61

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEIYGPESSGKTT+ALH +A +Q  GG  AF+DAEHAL+  YA+KLGVD  +LL+SQPD
Sbjct: 62  IVEIYGPESSGKTTVALHAVANAQAVGGVAAFIDAEHALEPEYAKKLGVDTDSLLVSQPD 121

Query: 129 TGEQALE 135
           TGEQALE
Sbjct: 122 TGEQALE 128


>gi|212286501|dbj|BAG82898.1| RecA protein [Rhizobium sp. Pt2-A15]
          Length = 145

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 118/145 (81%), Positives = 133/145 (91%), Gaps = 1/145 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  ++ E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQAR 177
           SVAALTPRAEIEG+MG+SLPG+QAR
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQAR 144


>gi|212286468|dbj|BAG82885.1| RecA protein [Rhizobium sp. Sb1-Nf19]
          Length = 145

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 117/145 (80%), Positives = 132/145 (91%), Gaps = 1/145 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS   + E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNEHVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQAR 177
           SVAALTPRAEIEG+MG+SLPG+QAR
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQAR 144


>gi|212286521|dbj|BAG82906.1| RecA protein [Rhizobium sp. Cg-S9]
          Length = 145

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 119/145 (82%), Positives = 133/145 (91%), Gaps = 1/145 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  SI E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNESIVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQAR 177
           SVAALTPRAEIEG+MG+SLPG+QAR
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQAR 144


>gi|167554602|dbj|BAG07000.1| recombinaseA [Leuconostoc citreum]
          Length = 164

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 116/164 (70%), Positives = 139/164 (84%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG+PKGRI+EIYGPESSGKTTLALH +A+ QK GGT A++DAE+ALD  Y
Sbjct: 1   SVKLDVALGVGGYPKGRIIEIYGPESSGKTTLALHAVAEVQKAGGTAAYIDAENALDVKY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A  LGV    LL+SQPDTGEQ LEI D LV+SGAVDIIV+DSVAAL PRAEIEG+MG+S 
Sbjct: 61  AEALGVQKDELLLSQPDTGEQGLEIADALVQSGAVDIIVVDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            G+QARLMSQALRKL  +++R+  I +FINQ+R KIGVMFG+PE
Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGVMFGNPE 164


>gi|38602337|emb|CAD58024.1| recombinase A [Acetobacter orleanensis]
          Length = 152

 Score =  158 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 118/152 (77%), Positives = 139/152 (91%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGA+D++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT S++RS  +++F+
Sbjct: 1   VRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGSVARSNTMMIFL 60

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+R+KIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIKDKD + GNQTRVKVVKNKMA
Sbjct: 61  NQIRLKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKDKDEVVGNQTRVKVVKNKMA 120

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
            PF+QVEFDIMYGEGIS  GELIDLGVKA +V
Sbjct: 121 PPFRQVEFDIMYGEGISKVGELIDLGVKAGVV 152


>gi|212286541|dbj|BAG82914.1| RecA protein [Rhizobium sp. 29118]
          Length = 145

 Score =  158 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 119/145 (82%), Positives = 133/145 (91%), Gaps = 1/145 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  ++ E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPIYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQAR 177
           SVAALTPRAEIEG+MG+SLPG+QAR
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQAR 144


>gi|313670302|gb|ADR73342.1| recombination protein A [Bradyrhizobium sp. 61A124]
          Length = 154

 Score =  158 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 119/153 (77%), Positives = 137/153 (89%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           +      IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG 
Sbjct: 2   KNDRSMDIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGI 61

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL
Sbjct: 62  CAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAAL 121

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
            P+AE+EG+MG++LPG+QARLMSQALRKLT+SI
Sbjct: 122 VPKAELEGEMGDALPGLQARLMSQALRKLTASI 154


>gi|313670090|gb|ADR73236.1| recombination protein A [Bradyrhizobium sp. HM116]
 gi|313670120|gb|ADR73251.1| recombination protein A [Bradyrhizobium sp. HM131]
 gi|313670138|gb|ADR73260.1| recombination protein A [Bradyrhizobium sp. HM140]
 gi|313670194|gb|ADR73288.1| recombination protein A [Bradyrhizobium sp. HO168]
 gi|313670208|gb|ADR73295.1| recombination protein A [Bradyrhizobium sp. HO175]
 gi|313670222|gb|ADR73302.1| recombination protein A [Bradyrhizobium sp. HO182]
 gi|313670230|gb|ADR73306.1| recombination protein A [Bradyrhizobium sp. HO186]
 gi|313670254|gb|ADR73318.1| recombination protein A [Bradyrhizobium sp. HO198]
 gi|313670256|gb|ADR73319.1| recombination protein A [Bradyrhizobium sp. HO199]
 gi|313670268|gb|ADR73325.1| recombination protein A [Bradyrhizobium sp. HO205]
 gi|313670288|gb|ADR73335.1| recombination protein A [Bradyrhizobium sp. HO215]
 gi|313670296|gb|ADR73339.1| recombination protein A [Bradyrhizobium sp. HO219]
 gi|313670300|gb|ADR73341.1| recombination protein A [Bradyrhizobium sp. 61A101]
          Length = 154

 Score =  158 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 116/153 (75%), Positives = 136/153 (88%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           +      +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG 
Sbjct: 2   KNDRSMDVETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGI 61

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL
Sbjct: 62  CAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAAL 121

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
            P+AE+EG+MG++LPG+QARLMSQALRKLT+SI
Sbjct: 122 VPKAELEGEMGDALPGLQARLMSQALRKLTASI 154


>gi|313670314|gb|ADR73348.1| recombination protein A [Bradyrhizobium pachyrhizi]
          Length = 154

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 117/153 (76%), Positives = 136/153 (88%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           +      +E +SSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+ QK GG 
Sbjct: 2   KNDRSMDVETISSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAEGQKKGGI 61

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL
Sbjct: 62  CAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVRSGAVDVLVIDSVAAL 121

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
            P+AE+EG+MG++LPG+QARLMSQALRKLT+SI
Sbjct: 122 VPKAELEGEMGDALPGLQARLMSQALRKLTASI 154


>gi|212286526|dbj|BAG82908.1| RecA protein [Rhizobium sp. 4918]
          Length = 145

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 115/146 (78%), Positives = 130/146 (89%), Gaps = 1/146 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  ++ E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQ LEITD LV SGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQVLEITDTLVASGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARL 178
           SVAALTPRAEIEG+MG+SLPG+Q R 
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQVRP 145


>gi|212286536|dbj|BAG82912.1| RecA protein [Rhizobium sp. 27118]
          Length = 145

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 119/145 (82%), Positives = 133/145 (91%), Gaps = 1/145 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  ++ E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VID
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQAR 177
           SVAALTPRAEIEG+MG+SLPG+QAR
Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQAR 144


>gi|167554606|dbj|BAG07002.1| recombinaseA [Leuconostoc lactis]
          Length = 164

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 116/164 (70%), Positives = 139/164 (84%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG+PKGRI+EIYGPESSGKTTLALH +A+ QK GGT A++DAE+ALD  Y
Sbjct: 1   SVKLDVALGVGGYPKGRIIEIYGPESSGKTTLALHAVAEVQKAGGTAAYIDAENALDVKY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A  LGV    LL+SQPDTGEQ LEI D LV+SGAVDIIV+DSVAAL PRAEIEG+MG+S 
Sbjct: 61  AEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDIIVVDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            G+QARLMSQALRKL  +++R+  I +FINQ+R KIGVMFG+PE
Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGVMFGNPE 164


>gi|313669870|gb|ADR73126.1| recombination protein A [Bradyrhizobium sp. OM6]
 gi|313669876|gb|ADR73129.1| recombination protein A [Bradyrhizobium sp. OM9]
 gi|313669912|gb|ADR73147.1| recombination protein A [Bradyrhizobium sp. OM27]
 gi|313669972|gb|ADR73177.1| recombination protein A [Bradyrhizobium sp. OO57]
 gi|313669978|gb|ADR73180.1| recombination protein A [Bradyrhizobium sp. OO60]
 gi|313669990|gb|ADR73186.1| recombination protein A [Bradyrhizobium sp. OO66]
 gi|313670006|gb|ADR73194.1| recombination protein A [Bradyrhizobium sp. OO74]
 gi|313670012|gb|ADR73197.1| recombination protein A [Bradyrhizobium sp. OO77]
 gi|313670020|gb|ADR73201.1| recombination protein A [Bradyrhizobium sp. OO81]
 gi|313670026|gb|ADR73204.1| recombination protein A [Bradyrhizobium sp. OO84]
 gi|313670028|gb|ADR73205.1| recombination protein A [Bradyrhizobium sp. OO85]
 gi|313670030|gb|ADR73206.1| recombination protein A [Bradyrhizobium sp. OO86]
 gi|313670046|gb|ADR73214.1| recombination protein A [Bradyrhizobium sp. OO94]
 gi|313670056|gb|ADR73219.1| recombination protein A [Bradyrhizobium sp. OO99]
 gi|313670058|gb|ADR73220.1| recombination protein A [Bradyrhizobium sp. OO100]
 gi|313670060|gb|ADR73221.1| recombination protein A [Bradyrhizobium sp. OO101]
          Length = 154

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 120/153 (78%), Positives = 137/153 (89%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           +      IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG 
Sbjct: 2   KNDRSMDIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGI 61

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL
Sbjct: 62  CAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAAL 121

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
            P+AE+EG+MG++LPG+QARLMSQALRKLT+SI
Sbjct: 122 VPKAELEGEMGDALPGLQARLMSQALRKLTASI 154


>gi|313669860|gb|ADR73121.1| recombination protein A [Bradyrhizobium sp. OM1]
 gi|313669862|gb|ADR73122.1| recombination protein A [Bradyrhizobium sp. OM2]
 gi|313669864|gb|ADR73123.1| recombination protein A [Bradyrhizobium sp. OM3]
 gi|313669866|gb|ADR73124.1| recombination protein A [Bradyrhizobium sp. OM4]
 gi|313669868|gb|ADR73125.1| recombination protein A [Bradyrhizobium sp. OM5]
 gi|313669872|gb|ADR73127.1| recombination protein A [Bradyrhizobium sp. OM7]
 gi|313669874|gb|ADR73128.1| recombination protein A [Bradyrhizobium sp. OM8]
 gi|313669878|gb|ADR73130.1| recombination protein A [Bradyrhizobium sp. OM10]
 gi|313669880|gb|ADR73131.1| recombination protein A [Bradyrhizobium sp. OM11]
 gi|313669882|gb|ADR73132.1| recombination protein A [Bradyrhizobium sp. OM12]
 gi|313669884|gb|ADR73133.1| recombination protein A [Bradyrhizobium sp. OM13]
 gi|313669886|gb|ADR73134.1| recombination protein A [Bradyrhizobium sp. OM14]
 gi|313669888|gb|ADR73135.1| recombination protein A [Bradyrhizobium sp. OM15]
 gi|313669890|gb|ADR73136.1| recombination protein A [Bradyrhizobium sp. OM16]
 gi|313669892|gb|ADR73137.1| recombination protein A [Bradyrhizobium sp. OM17]
 gi|313669894|gb|ADR73138.1| recombination protein A [Bradyrhizobium sp. OM18]
 gi|313669896|gb|ADR73139.1| recombination protein A [Bradyrhizobium sp. OM19]
 gi|313669898|gb|ADR73140.1| recombination protein A [Bradyrhizobium sp. OM20]
 gi|313669900|gb|ADR73141.1| recombination protein A [Bradyrhizobium sp. OM21]
 gi|313669902|gb|ADR73142.1| recombination protein A [Bradyrhizobium sp. OM22]
 gi|313669904|gb|ADR73143.1| recombination protein A [Bradyrhizobium sp. OM23]
 gi|313669906|gb|ADR73144.1| recombination protein A [Bradyrhizobium sp. OM24]
 gi|313669908|gb|ADR73145.1| recombination protein A [Bradyrhizobium sp. OM25]
 gi|313669910|gb|ADR73146.1| recombination protein A [Bradyrhizobium sp. OM26]
 gi|313669914|gb|ADR73148.1| recombination protein A [Bradyrhizobium sp. OM28]
 gi|313669916|gb|ADR73149.1| recombination protein A [Bradyrhizobium sp. OM29]
 gi|313669918|gb|ADR73150.1| recombination protein A [Bradyrhizobium sp. OM30]
 gi|313669920|gb|ADR73151.1| recombination protein A [Bradyrhizobium sp. OM31]
 gi|313669922|gb|ADR73152.1| recombination protein A [Bradyrhizobium sp. OM32]
 gi|313669924|gb|ADR73153.1| recombination protein A [Bradyrhizobium sp. OM33]
 gi|313669926|gb|ADR73154.1| recombination protein A [Bradyrhizobium sp. OM34]
 gi|313669928|gb|ADR73155.1| recombination protein A [Bradyrhizobium sp. OM35]
 gi|313669930|gb|ADR73156.1| recombination protein A [Bradyrhizobium sp. OM36]
 gi|313669932|gb|ADR73157.1| recombination protein A [Bradyrhizobium sp. OM37]
 gi|313669934|gb|ADR73158.1| recombination protein A [Bradyrhizobium sp. OM38]
 gi|313669936|gb|ADR73159.1| recombination protein A [Bradyrhizobium sp. OM39]
 gi|313669938|gb|ADR73160.1| recombination protein A [Bradyrhizobium sp. OM40]
 gi|313669940|gb|ADR73161.1| recombination protein A [Bradyrhizobium sp. OM41]
 gi|313669942|gb|ADR73162.1| recombination protein A [Bradyrhizobium sp. OM42]
 gi|313669944|gb|ADR73163.1| recombination protein A [Bradyrhizobium sp. OM43]
 gi|313669946|gb|ADR73164.1| recombination protein A [Bradyrhizobium sp. OM44]
 gi|313669948|gb|ADR73165.1| recombination protein A [Bradyrhizobium sp. OM45]
 gi|313669950|gb|ADR73166.1| recombination protein A [Bradyrhizobium sp. OM46]
 gi|313669952|gb|ADR73167.1| recombination protein A [Bradyrhizobium sp. OM47]
 gi|313669954|gb|ADR73168.1| recombination protein A [Bradyrhizobium sp. OM48]
 gi|313669956|gb|ADR73169.1| recombination protein A [Bradyrhizobium sp. OM49]
 gi|313669958|gb|ADR73170.1| recombination protein A [Bradyrhizobium sp. OM50]
 gi|313669960|gb|ADR73171.1| recombination protein A [Bradyrhizobium sp. OM51]
 gi|313669962|gb|ADR73172.1| recombination protein A [Bradyrhizobium sp. OM52]
 gi|313669964|gb|ADR73173.1| recombination protein A [Bradyrhizobium sp. OM53]
 gi|313669966|gb|ADR73174.1| recombination protein A [Bradyrhizobium sp. OM54]
 gi|313669968|gb|ADR73175.1| recombination protein A [Bradyrhizobium sp. OM55]
 gi|313669970|gb|ADR73176.1| recombination protein A [Bradyrhizobium sp. OO56]
 gi|313669974|gb|ADR73178.1| recombination protein A [Bradyrhizobium sp. OO58]
 gi|313669976|gb|ADR73179.1| recombination protein A [Bradyrhizobium sp. OO59]
 gi|313669980|gb|ADR73181.1| recombination protein A [Bradyrhizobium sp. OO61]
 gi|313669982|gb|ADR73182.1| recombination protein A [Bradyrhizobium sp. OO62]
 gi|313669984|gb|ADR73183.1| recombination protein A [Bradyrhizobium sp. OO63]
 gi|313669986|gb|ADR73184.1| recombination protein A [Bradyrhizobium sp. OO64]
 gi|313669988|gb|ADR73185.1| recombination protein A [Bradyrhizobium sp. OO65]
 gi|313669992|gb|ADR73187.1| recombination protein A [Bradyrhizobium sp. OO67]
 gi|313669994|gb|ADR73188.1| recombination protein A [Bradyrhizobium sp. OO68]
 gi|313669996|gb|ADR73189.1| recombination protein A [Bradyrhizobium sp. OO69]
 gi|313669998|gb|ADR73190.1| recombination protein A [Bradyrhizobium sp. OO70]
 gi|313670000|gb|ADR73191.1| recombination protein A [Bradyrhizobium sp. OO71]
 gi|313670002|gb|ADR73192.1| recombination protein A [Bradyrhizobium sp. OO72]
 gi|313670004|gb|ADR73193.1| recombination protein A [Bradyrhizobium sp. OO73]
 gi|313670008|gb|ADR73195.1| recombination protein A [Bradyrhizobium sp. OO75]
 gi|313670010|gb|ADR73196.1| recombination protein A [Bradyrhizobium sp. OO76]
 gi|313670014|gb|ADR73198.1| recombination protein A [Bradyrhizobium sp. OO78]
 gi|313670016|gb|ADR73199.1| recombination protein A [Bradyrhizobium sp. OO79]
 gi|313670018|gb|ADR73200.1| recombination protein A [Bradyrhizobium sp. OO80]
 gi|313670022|gb|ADR73202.1| recombination protein A [Bradyrhizobium sp. OO82]
 gi|313670024|gb|ADR73203.1| recombination protein A [Bradyrhizobium sp. OO83]
 gi|313670032|gb|ADR73207.1| recombination protein A [Bradyrhizobium sp. OO87]
 gi|313670034|gb|ADR73208.1| recombination protein A [Bradyrhizobium sp. OO88]
 gi|313670036|gb|ADR73209.1| recombination protein A [Bradyrhizobium sp. OO89]
 gi|313670038|gb|ADR73210.1| recombination protein A [Bradyrhizobium sp. OO90]
 gi|313670040|gb|ADR73211.1| recombination protein A [Bradyrhizobium sp. OO91]
 gi|313670042|gb|ADR73212.1| recombination protein A [Bradyrhizobium sp. OO92]
 gi|313670044|gb|ADR73213.1| recombination protein A [Bradyrhizobium sp. OO93]
 gi|313670048|gb|ADR73215.1| recombination protein A [Bradyrhizobium sp. OO95]
 gi|313670050|gb|ADR73216.1| recombination protein A [Bradyrhizobium sp. OO96]
 gi|313670052|gb|ADR73217.1| recombination protein A [Bradyrhizobium sp. OO97]
 gi|313670054|gb|ADR73218.1| recombination protein A [Bradyrhizobium sp. OO98]
 gi|313670062|gb|ADR73222.1| recombination protein A [Bradyrhizobium sp. OO102]
 gi|313670064|gb|ADR73223.1| recombination protein A [Bradyrhizobium sp. OO103]
 gi|313670066|gb|ADR73224.1| recombination protein A [Bradyrhizobium sp. OO104]
 gi|313670068|gb|ADR73225.1| recombination protein A [Bradyrhizobium sp. OO105]
 gi|313670070|gb|ADR73226.1| recombination protein A [Bradyrhizobium sp. OO106]
 gi|313670072|gb|ADR73227.1| recombination protein A [Bradyrhizobium sp. OO107]
 gi|313670074|gb|ADR73228.1| recombination protein A [Bradyrhizobium sp. OO108]
 gi|313670076|gb|ADR73229.1| recombination protein A [Bradyrhizobium sp. OO109]
 gi|313670078|gb|ADR73230.1| recombination protein A [Bradyrhizobium sp. OO110]
 gi|313670080|gb|ADR73231.1| recombination protein A [Bradyrhizobium sp. HM111]
 gi|313670082|gb|ADR73232.1| recombination protein A [Bradyrhizobium sp. HM112]
 gi|313670084|gb|ADR73233.1| recombination protein A [Bradyrhizobium sp. HM113]
 gi|313670086|gb|ADR73234.1| recombination protein A [Bradyrhizobium sp. HM114]
 gi|313670088|gb|ADR73235.1| recombination protein A [Bradyrhizobium sp. HM115]
 gi|313670092|gb|ADR73237.1| recombination protein A [Bradyrhizobium sp. HM117]
 gi|313670094|gb|ADR73238.1| recombination protein A [Bradyrhizobium sp. HM118]
 gi|313670096|gb|ADR73239.1| recombination protein A [Bradyrhizobium sp. HM119]
 gi|313670098|gb|ADR73240.1| recombination protein A [Bradyrhizobium sp. HM120]
 gi|313670100|gb|ADR73241.1| recombination protein A [Bradyrhizobium sp. HM121]
 gi|313670102|gb|ADR73242.1| recombination protein A [Bradyrhizobium sp. HM122]
 gi|313670104|gb|ADR73243.1| recombination protein A [Bradyrhizobium sp. HM123]
 gi|313670106|gb|ADR73244.1| recombination protein A [Bradyrhizobium sp. HM124]
 gi|313670108|gb|ADR73245.1| recombination protein A [Bradyrhizobium sp. HM125]
 gi|313670110|gb|ADR73246.1| recombination protein A [Bradyrhizobium sp. HM126]
 gi|313670112|gb|ADR73247.1| recombination protein A [Bradyrhizobium sp. HM127]
 gi|313670114|gb|ADR73248.1| recombination protein A [Bradyrhizobium sp. HM128]
 gi|313670116|gb|ADR73249.1| recombination protein A [Bradyrhizobium sp. HM129]
 gi|313670118|gb|ADR73250.1| recombination protein A [Bradyrhizobium sp. HM130]
 gi|313670122|gb|ADR73252.1| recombination protein A [Bradyrhizobium sp. HM132]
 gi|313670124|gb|ADR73253.1| recombination protein A [Bradyrhizobium sp. HM133]
 gi|313670126|gb|ADR73254.1| recombination protein A [Bradyrhizobium sp. HM134]
 gi|313670128|gb|ADR73255.1| recombination protein A [Bradyrhizobium sp. HM135]
 gi|313670130|gb|ADR73256.1| recombination protein A [Bradyrhizobium sp. HM136]
 gi|313670132|gb|ADR73257.1| recombination protein A [Bradyrhizobium sp. HM137]
 gi|313670134|gb|ADR73258.1| recombination protein A [Bradyrhizobium sp. HM138]
 gi|313670136|gb|ADR73259.1| recombination protein A [Bradyrhizobium sp. HM139]
 gi|313670140|gb|ADR73261.1| recombination protein A [Bradyrhizobium sp. HM141]
 gi|313670142|gb|ADR73262.1| recombination protein A [Bradyrhizobium sp. HM142]
 gi|313670144|gb|ADR73263.1| recombination protein A [Bradyrhizobium sp. HM143]
 gi|313670146|gb|ADR73264.1| recombination protein A [Bradyrhizobium sp. HM144]
 gi|313670148|gb|ADR73265.1| recombination protein A [Bradyrhizobium sp. HM145]
 gi|313670150|gb|ADR73266.1| recombination protein A [Bradyrhizobium sp. HM146]
 gi|313670152|gb|ADR73267.1| recombination protein A [Bradyrhizobium sp. HM147]
 gi|313670154|gb|ADR73268.1| recombination protein A [Bradyrhizobium sp. HM148]
 gi|313670156|gb|ADR73269.1| recombination protein A [Bradyrhizobium sp. HM149]
 gi|313670158|gb|ADR73270.1| recombination protein A [Bradyrhizobium sp. HM150]
 gi|313670160|gb|ADR73271.1| recombination protein A [Bradyrhizobium sp. HM151]
 gi|313670162|gb|ADR73272.1| recombination protein A [Bradyrhizobium sp. HM152]
 gi|313670164|gb|ADR73273.1| recombination protein A [Bradyrhizobium sp. HM153]
 gi|313670166|gb|ADR73274.1| recombination protein A [Bradyrhizobium sp. HM154]
 gi|313670168|gb|ADR73275.1| recombination protein A [Bradyrhizobium sp. HM155]
 gi|313670170|gb|ADR73276.1| recombination protein A [Bradyrhizobium sp. HM156]
 gi|313670172|gb|ADR73277.1| recombination protein A [Bradyrhizobium sp. HM157]
 gi|313670174|gb|ADR73278.1| recombination protein A [Bradyrhizobium sp. HM158]
 gi|313670176|gb|ADR73279.1| recombination protein A [Bradyrhizobium sp. HM159]
 gi|313670178|gb|ADR73280.1| recombination protein A [Bradyrhizobium sp. HM160]
 gi|313670180|gb|ADR73281.1| recombination protein A [Bradyrhizobium sp. HM161]
 gi|313670182|gb|ADR73282.1| recombination protein A [Bradyrhizobium sp. HM162]
 gi|313670184|gb|ADR73283.1| recombination protein A [Bradyrhizobium sp. HM163]
 gi|313670186|gb|ADR73284.1| recombination protein A [Bradyrhizobium sp. HM164]
 gi|313670188|gb|ADR73285.1| recombination protein A [Bradyrhizobium sp. HM165]
 gi|313670190|gb|ADR73286.1| recombination protein A [Bradyrhizobium sp. HO166]
 gi|313670192|gb|ADR73287.1| recombination protein A [Bradyrhizobium sp. HO167]
 gi|313670196|gb|ADR73289.1| recombination protein A [Bradyrhizobium sp. HO169]
 gi|313670198|gb|ADR73290.1| recombination protein A [Bradyrhizobium sp. HO170]
 gi|313670200|gb|ADR73291.1| recombination protein A [Bradyrhizobium sp. HO171]
 gi|313670202|gb|ADR73292.1| recombination protein A [Bradyrhizobium sp. HO172]
 gi|313670204|gb|ADR73293.1| recombination protein A [Bradyrhizobium sp. HO173]
 gi|313670206|gb|ADR73294.1| recombination protein A [Bradyrhizobium sp. HO174]
 gi|313670210|gb|ADR73296.1| recombination protein A [Bradyrhizobium sp. HO176]
 gi|313670212|gb|ADR73297.1| recombination protein A [Bradyrhizobium sp. HO177]
 gi|313670214|gb|ADR73298.1| recombination protein A [Bradyrhizobium sp. HO178]
 gi|313670216|gb|ADR73299.1| recombination protein A [Bradyrhizobium sp. HO179]
 gi|313670218|gb|ADR73300.1| recombination protein A [Bradyrhizobium sp. HO180]
 gi|313670220|gb|ADR73301.1| recombination protein A [Bradyrhizobium sp. HO181]
 gi|313670224|gb|ADR73303.1| recombination protein A [Bradyrhizobium sp. HO183]
 gi|313670226|gb|ADR73304.1| recombination protein A [Bradyrhizobium sp. HO184]
 gi|313670228|gb|ADR73305.1| recombination protein A [Bradyrhizobium sp. HO185]
 gi|313670232|gb|ADR73307.1| recombination protein A [Bradyrhizobium sp. HO187]
 gi|313670234|gb|ADR73308.1| recombination protein A [Bradyrhizobium sp. HO188]
 gi|313670236|gb|ADR73309.1| recombination protein A [Bradyrhizobium sp. HO189]
 gi|313670238|gb|ADR73310.1| recombination protein A [Bradyrhizobium sp. HO190]
 gi|313670240|gb|ADR73311.1| recombination protein A [Bradyrhizobium sp. HO191]
 gi|313670242|gb|ADR73312.1| recombination protein A [Bradyrhizobium sp. HO192]
 gi|313670244|gb|ADR73313.1| recombination protein A [Bradyrhizobium sp. HO193]
 gi|313670246|gb|ADR73314.1| recombination protein A [Bradyrhizobium sp. HO194]
 gi|313670248|gb|ADR73315.1| recombination protein A [Bradyrhizobium sp. HO195]
 gi|313670250|gb|ADR73316.1| recombination protein A [Bradyrhizobium sp. HO196]
 gi|313670252|gb|ADR73317.1| recombination protein A [Bradyrhizobium sp. HO197]
 gi|313670258|gb|ADR73320.1| recombination protein A [Bradyrhizobium sp. HO200]
 gi|313670260|gb|ADR73321.1| recombination protein A [Bradyrhizobium sp. HO201]
 gi|313670262|gb|ADR73322.1| recombination protein A [Bradyrhizobium sp. HO202]
 gi|313670264|gb|ADR73323.1| recombination protein A [Bradyrhizobium sp. HO203]
 gi|313670266|gb|ADR73324.1| recombination protein A [Bradyrhizobium sp. HO204]
 gi|313670270|gb|ADR73326.1| recombination protein A [Bradyrhizobium sp. HO206]
 gi|313670272|gb|ADR73327.1| recombination protein A [Bradyrhizobium sp. HO207]
 gi|313670274|gb|ADR73328.1| recombination protein A [Bradyrhizobium sp. HO208]
 gi|313670276|gb|ADR73329.1| recombination protein A [Bradyrhizobium sp. HO209]
 gi|313670278|gb|ADR73330.1| recombination protein A [Bradyrhizobium sp. HO210]
 gi|313670280|gb|ADR73331.1| recombination protein A [Bradyrhizobium sp. HO211]
 gi|313670282|gb|ADR73332.1| recombination protein A [Bradyrhizobium sp. HO212]
 gi|313670284|gb|ADR73333.1| recombination protein A [Bradyrhizobium sp. HO213]
 gi|313670286|gb|ADR73334.1| recombination protein A [Bradyrhizobium sp. HO214]
 gi|313670290|gb|ADR73336.1| recombination protein A [Bradyrhizobium sp. HO216]
 gi|313670292|gb|ADR73337.1| recombination protein A [Bradyrhizobium sp. HO217]
 gi|313670294|gb|ADR73338.1| recombination protein A [Bradyrhizobium sp. HO218]
 gi|313670298|gb|ADR73340.1| recombination protein A [Bradyrhizobium sp. HO220]
 gi|313670304|gb|ADR73343.1| recombination protein A [Bradyrhizobium japonicum]
 gi|313670306|gb|ADR73344.1| recombination protein A [Bradyrhizobium japonicum]
 gi|313670308|gb|ADR73345.1| recombination protein A [Bradyrhizobium japonicum]
 gi|313670310|gb|ADR73346.1| recombination protein A [Bradyrhizobium japonicum]
 gi|313670316|gb|ADR73349.1| recombination protein A [Bradyrhizobium japonicum]
 gi|313670318|gb|ADR73350.1| recombination protein A [Bradyrhizobium japonicum]
 gi|313670320|gb|ADR73351.1| recombination protein A [Bradyrhizobium japonicum]
          Length = 154

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 117/153 (76%), Positives = 137/153 (89%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           +      +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG 
Sbjct: 2   KNDRSMDVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGI 61

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL
Sbjct: 62  CAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAAL 121

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
            P+AE+EG+MG++LPG+QARLMSQALRKLT+SI
Sbjct: 122 VPKAELEGEMGDALPGLQARLMSQALRKLTASI 154


>gi|91981414|gb|ABE68049.1| recombinase [Pseudomonas sp. CM1'A2]
 gi|91981416|gb|ABE68050.1| recombinase [Pseudomonas sp. F113]
 gi|91981418|gb|ABE68051.1| recombinase [Pseudomonas sp. F96.27]
 gi|91981422|gb|ABE68053.1| recombinase [Pseudomonas sp. K94.31]
 gi|91981428|gb|ABE68056.1| recombinase [Pseudomonas sp. P97.30]
 gi|91981430|gb|ABE68057.1| recombinase [Pseudomonas sp. P97.38]
 gi|91981434|gb|ABE68059.1| recombinase [Pseudomonas sp. PILH1]
 gi|91981450|gb|ABE68067.1| recombinase [Pseudomonas sp. Q7-87]
 gi|91981452|gb|ABE68068.1| recombinase [Pseudomonas sp. TM1A3]
 gi|91981454|gb|ABE68069.1| recombinase [Pseudomonas sp. C*1A1]
 gi|91981456|gb|ABE68070.1| recombinase [Pseudomonas sp. TM1B2]
 gi|91981458|gb|ABE68071.1| recombinase [Pseudomonas sp. P97.6]
 gi|91981462|gb|ABE68073.1| recombinase [Pseudomonas sp. Q13-87]
 gi|91981464|gb|ABE68074.1| recombinase [Pseudomonas sp. Q128-87]
 gi|91981466|gb|ABE68075.1| recombinase [Pseudomonas sp. P97.26]
 gi|91981468|gb|ABE68076.1| recombinase [Pseudomonas sp. K93.3]
          Length = 158

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 114/160 (71%), Positives = 134/160 (83%), Gaps = 2/160 (1%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           ++G Q    + I  +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L  IAQ+QK
Sbjct: 1   RMGDQDR--QAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAQAQK 58

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DS
Sbjct: 59  AGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDS 118

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           VAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  +
Sbjct: 119 VAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNA 158


>gi|324962818|gb|ADY62490.1| recombinase protein A [Mesorhizobium sp. CCNWSX661]
          Length = 144

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 114/138 (82%), Positives = 129/138 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDA
Sbjct: 7   EIETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDA 66

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEI
Sbjct: 67  EHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEI 126

Query: 164 EGDMGESLPGMQARLMSQ 181
           EG+MG+SLPG+QARLMSQ
Sbjct: 127 EGEMGDSLPGLQARLMSQ 144


>gi|70904857|gb|AAZ14008.1| RecA [Burkholderia cenocepacia]
          Length = 137

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 98/138 (71%), Positives = 117/138 (84%), Gaps = 1/138 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDSVAALTPRA 161
           G++D+IVIDSVAAL P+A
Sbjct: 120 GSIDMIVIDSVAALVPKA 137


>gi|91981420|gb|ABE68052.1| recombinase [Pseudomonas sp. K93.2]
 gi|91981424|gb|ABE68054.1| recombinase [Pseudomonas sp. K94.37]
 gi|91981436|gb|ABE68060.1| recombinase [Pseudomonas sp. Q37-87]
 gi|91981438|gb|ABE68061.1| recombinase [Pseudomonas sp. Q65c-80]
 gi|91981460|gb|ABE68072.1| recombinase [Pseudomonas sp. P96.25]
          Length = 157

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 114/159 (71%), Positives = 133/159 (83%), Gaps = 2/159 (1%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           ++G Q    + I  +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L  IAQ+QK
Sbjct: 1   RMGDQDR--QAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAQAQK 58

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DS
Sbjct: 59  AGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDS 118

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           VAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  
Sbjct: 119 VAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKN 157


>gi|38602345|emb|CAD58028.1| recombinase A [Acidomonas methanolica]
          Length = 152

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 119/152 (78%), Positives = 140/152 (92%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGA+D++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT ++SRS  +++F+
Sbjct: 1   VRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGTVSRSNTMVIFL 60

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIKD+D + GNQTRVKVVKNKMA
Sbjct: 61  NQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKDRDKVVGNQTRVKVVKNKMA 120

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
            PF+QVEFDIMYGEG+S  GELIDLGVKA+IV
Sbjct: 121 PPFRQVEFDIMYGEGVSKMGELIDLGVKANIV 152


>gi|212286511|dbj|BAG82902.1| RecA protein [Rhizobium sp. Cg-N13]
          Length = 145

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 119/145 (82%), Positives = 133/145 (91%), Gaps = 1/145 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS  +I E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQAR 177
           SVAALTPRAEIEGDMG++LPGMQAR
Sbjct: 120 SVAALTPRAEIEGDMGDNLPGMQAR 144


>gi|167554614|dbj|BAG07006.1| recombinaseA [Leuconostoc carnosum]
          Length = 164

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 115/164 (70%), Positives = 139/164 (84%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG+PKGRI+EIYGPESSGKTTLALH +A+ QK GGT A++DAE+ALD  Y
Sbjct: 1   SVKLDVALGVGGYPKGRIIEIYGPESSGKTTLALHAVAEVQKAGGTAAYIDAENALDVKY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A  LG+    LL+SQPDTGEQ LEI D LV+SGAVDIIVIDSVAAL PRAEIEG+MG++ 
Sbjct: 61  AEALGIHKDELLLSQPDTGEQGLEIADALVQSGAVDIIVIDSVAALVPRAEIEGEMGDAH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            G+QARLMSQALRKL  +++R+  I +FINQ+R KIGVMFG+PE
Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGVMFGNPE 164


>gi|91981408|gb|ABE68046.1| recombinase [Pseudomonas sp. Q2-87]
          Length = 156

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 114/158 (72%), Positives = 133/158 (84%), Gaps = 2/158 (1%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           ++G Q    + I  +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L  IAQ+QK
Sbjct: 1   RMGDQDR--QAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAQAQK 58

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DS
Sbjct: 59  AGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDS 118

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           VAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I 
Sbjct: 119 VAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIK 156


>gi|324962820|gb|ADY62491.1| recombinase protein A [Agrobacterium sp. CCNWSX662]
          Length = 146

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 119/147 (80%), Positives = 134/147 (91%), Gaps = 1/147 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LGS  ++ E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK 
Sbjct: 1   LGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKK 59

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGEQALEITD LVRSGAVD++V+DSV
Sbjct: 60  GGICAFVDAEHALDPVYARKLGVDLQGLLISQPDTGEQALEITDTLVRSGAVDVLVVDSV 119

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQ 181
           AALTPRAEIEG+MG+SLPG+QARLMSQ
Sbjct: 120 AALTPRAEIEGEMGDSLPGLQARLMSQ 146


>gi|91981412|gb|ABE68048.1| recombinase [Pseudomonas sp. CHA0]
 gi|91981432|gb|ABE68058.1| recombinase [Pseudomonas sp. Pf-5]
 gi|91981440|gb|ABE68062.1| recombinase [Pseudomonas sp. PF]
 gi|91981442|gb|ABE68063.1| recombinase [Pseudomonas sp. PGNR1]
 gi|91981444|gb|ABE68064.1| recombinase [Pseudomonas sp. PGNL1]
 gi|91981446|gb|ABE68065.1| recombinase [Pseudomonas sp. K94.41]
 gi|91981448|gb|ABE68066.1| recombinase [Pseudomonas sp. S8-62]
          Length = 158

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 113/160 (70%), Positives = 133/160 (83%), Gaps = 2/160 (1%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           ++G      + I  +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L  IAQ+QK
Sbjct: 1   RMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAQAQK 58

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DS
Sbjct: 59  AGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDS 118

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           VAAL P+AEIEG+MG+   G+QARLMSQALRK+T +I  +
Sbjct: 119 VAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNA 158


>gi|146431678|gb|ABQ40821.1| recombination-repair protein [Vibrio harveyi]
 gi|146432130|gb|ABQ41047.1| recombination-repair protein [Vibrio campbellii]
 gi|146432235|gb|ABQ41099.1| recombination-repair protein [Vibrio rotiferianus]
 gi|146432237|gb|ABQ41100.1| recombination-repair protein [Vibrio rotiferianus]
          Length = 173

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 121/173 (69%), Positives = 153/173 (88%)

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALT
Sbjct: 1   AFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALT 60

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           P+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTT
Sbjct: 61  PKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTT 120

Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           GGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IM
Sbjct: 121 GGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIM 173


>gi|29119699|emb|CAD79375.1| RecA protein [Burkholderia fungorum]
          Length = 147

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 102/148 (68%), Positives = 125/148 (84%), Gaps = 1/148 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG++M+LG  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSVMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPD 119

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAA 156
           TGEQALEI D LVRSG++D+IVIDSVAA
Sbjct: 120 TGEQALEIADALVRSGSIDMIVIDSVAA 147


>gi|167554612|dbj|BAG07005.1| recombinaseA [Leuconostoc fallax]
          Length = 164

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 114/164 (69%), Positives = 141/164 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LDIALG+GG+PKGRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  Y
Sbjct: 1   SVKLDIALGVGGYPKGRIIEVYGPESSGKTTIALHAVAEVQKQGGTAAYIDAENALDVKY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A  LGVD K LL+SQPDTGEQ LEI D LV+SGAVD+IV+DSVAAL PRAEIEG+MG++ 
Sbjct: 61  AEALGVDSKELLLSQPDTGEQGLEIADALVQSGAVDMIVVDSVAALVPRAEIEGEMGDAH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            G+QARLMSQALRKL  +++R+  I +FINQ+R K+GVMFG+PE
Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPE 164


>gi|90856165|gb|ABE01374.1| recombination protein A [Mesorhizobium ciceri]
 gi|90856167|gb|ABE01375.1| recombination protein A [Mesorhizobium ciceri]
 gi|90856185|gb|ABE01384.1| recombination protein A [Mesorhizobium ciceri]
 gi|90856187|gb|ABE01385.1| recombination protein A [Mesorhizobium ciceri]
          Length = 143

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 112/143 (78%), Positives = 130/143 (90%), Gaps = 1/143 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++QK 
Sbjct: 1   LGANDQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQKK 59

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSV
Sbjct: 60  GGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSV 119

Query: 155 AALTPRAEIEGDMGESLPGMQAR 177
           AALTPRAEIEG+MG+SLPG+QAR
Sbjct: 120 AALTPRAEIEGEMGDSLPGLQAR 142


>gi|38602305|emb|CAD58008.1| recombinase A [Gluconacetobacter europaeus]
 gi|38602307|emb|CAD58009.1| recombinase A [Gluconacetobacter intermedius]
 gi|38602313|emb|CAD58012.1| recombinase A [Gluconacetobacter swingsii]
 gi|38602319|emb|CAD58015.1| recombinase A [Gluconacetobacter xylinus]
 gi|38602321|emb|CAD58016.1| recombinase A [Gluconacetobacter xylinus]
          Length = 152

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 123/152 (80%), Positives = 140/152 (92%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGAVD++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT S+SRS  +L+F+
Sbjct: 1   VRSGAVDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGSVSRSNTMLIFL 60

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+R+KIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDKD +TGNQTRVKVVKNKMA
Sbjct: 61  NQIRLKIGVMFGSPETTTGGNALKFYASVRMDIRRIGSIKDKDEVTGNQTRVKVVKNKMA 120

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
            PF+QVEFDIMYGEGIS  GELIDLGVKA IV
Sbjct: 121 PPFRQVEFDIMYGEGISKVGELIDLGVKAGIV 152


>gi|224174454|emb|CAR92645.1| recombinase A [Bradyrhizobium sp. LMG 15245]
 gi|224174456|emb|CAR92646.1| recombinase A [Bradyrhizobium sp. LMG 15253]
          Length = 147

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 108/147 (73%), Positives = 128/147 (87%), Gaps = 1/147 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LG        +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+
Sbjct: 1   SVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V
Sbjct: 60  GQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQAR 177
           +DSVAAL P+AE+EG+MG++LPG+QAR
Sbjct: 120 VDSVAALVPKAELEGEMGDALPGLQAR 146


>gi|38602331|emb|CAD58021.1| recombinase A [Acetobacter estunensis]
          Length = 152

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 117/152 (76%), Positives = 139/152 (91%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGA+D++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT ++SRS  +L+F+
Sbjct: 1   VRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGTVSRSNTLLIFL 60

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+R+KIGVMFG+PETTTGGNALKFY+SVR+DIRR+G+IKDKD + GNQTRVKVVKNKMA
Sbjct: 61  NQIRLKIGVMFGNPETTTGGNALKFYASVRMDIRRIGAIKDKDEVVGNQTRVKVVKNKMA 120

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
            PF+QVEFDIMYGEGIS  GELIDLGVKA +V
Sbjct: 121 PPFRQVEFDIMYGEGISKMGELIDLGVKAGVV 152


>gi|90856171|gb|ABE01377.1| recombination protein A [Mesorhizobium sp. 64b-Beja]
 gi|90856173|gb|ABE01378.1| recombination protein A [Mesorhizobium loti]
 gi|90856175|gb|ABE01379.1| recombination protein A [Mesorhizobium sp. 78-Elvas]
 gi|90856177|gb|ABE01380.1| recombination protein A [Mesorhizobium sp. 85-Elvas]
 gi|90856179|gb|ABE01381.1| recombination protein A [Mesorhizobium ciceri]
 gi|90856181|gb|ABE01382.1| recombination protein A [Mesorhizobium sp. CV-18-Elvas]
 gi|90856193|gb|ABE01388.1| recombination protein A [Mesorhizobium sp. 90-Evora]
 gi|90856197|gb|ABE01390.1| recombination protein A [Mesorhizobium sp. 94-Evora]
 gi|90856199|gb|ABE01391.1| recombination protein A [Mesorhizobium sp. 98-Evora]
 gi|90856201|gb|ABE01392.1| recombination protein A [Mesorhizobium sp. 102-Evora]
 gi|157931031|gb|ABW04741.1| recombination protein [Mesorhizobium sp. C-1-Coimbra]
 gi|157931033|gb|ABW04742.1| recombination protein [Mesorhizobium sp. C-27b-Coimbra]
 gi|157931035|gb|ABW04743.1| recombination protein [Mesorhizobium sp. V-15b-Viseu]
 gi|157931037|gb|ABW04744.1| recombination protein [Mesorhizobium sp. V-18-Viseu]
 gi|157931039|gb|ABW04745.1| recombination protein [Mesorhizobium sp. V-20-Viseu]
          Length = 143

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 112/143 (78%), Positives = 130/143 (90%), Gaps = 1/143 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++QK 
Sbjct: 1   LGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQKK 59

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSV
Sbjct: 60  GGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSV 119

Query: 155 AALTPRAEIEGDMGESLPGMQAR 177
           AALTPRAEIEG+MG+SLPG+QAR
Sbjct: 120 AALTPRAEIEGEMGDSLPGLQAR 142


>gi|146432128|gb|ABQ41046.1| recombination-repair protein [Vibrio campbellii]
          Length = 173

 Score =  156 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 120/173 (69%), Positives = 152/173 (87%)

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           A +DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALT
Sbjct: 1   ALIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALT 60

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           P+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTT
Sbjct: 61  PKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTT 120

Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           GGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IM
Sbjct: 121 GGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIM 173


>gi|90856163|gb|ABE01373.1| recombination protein A [Mesorhizobium mediterraneum]
 gi|90856169|gb|ABE01376.1| recombination protein A [Mesorhizobium mediterraneum]
 gi|90856183|gb|ABE01383.1| recombination protein A [Mesorhizobium mediterraneum]
 gi|90856189|gb|ABE01386.1| recombination protein A [Mesorhizobium mediterraneum]
 gi|90856195|gb|ABE01389.1| recombination protein A [Mesorhizobium tianshanense]
 gi|90856203|gb|ABE01393.1| recombination protein A [Mesorhizobium tianshanense]
 gi|90856209|gb|ABE01397.1| recombination protein A [Mesorhizobium septentrionale]
 gi|90856211|gb|ABE01398.1| recombination protein A [Mesorhizobium temperatum]
 gi|157931029|gb|ABW04740.1| recombination protein [Mesorhizobium loti]
          Length = 143

 Score =  156 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 113/143 (79%), Positives = 130/143 (90%), Gaps = 1/143 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG+   + E IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK 
Sbjct: 1   LGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKK 59

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSV
Sbjct: 60  GGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSV 119

Query: 155 AALTPRAEIEGDMGESLPGMQAR 177
           AALTPRAEIEG+MG+SLPG+QAR
Sbjct: 120 AALTPRAEIEGEMGDSLPGLQAR 142


>gi|38602335|emb|CAD58023.1| recombinase A [Acetobacter lovaniensis]
          Length = 152

 Score =  156 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 119/152 (78%), Positives = 140/152 (92%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGA+D++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT +++RS  +++F+
Sbjct: 1   VRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGTVARSNTLMIFL 60

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+R+KIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIKDKD +TGNQTRVKVVKNKMA
Sbjct: 61  NQIRLKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKDKDEVTGNQTRVKVVKNKMA 120

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
            PF+QVEFDIMYGEGIS  GELIDLGVKA +V
Sbjct: 121 PPFRQVEFDIMYGEGISKVGELIDLGVKAGVV 152


>gi|167554594|dbj|BAG06996.1| recombinaseA [Leuconostoc gasicomitatum]
          Length = 164

 Score =  156 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 115/164 (70%), Positives = 139/164 (84%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG+PKGRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  Y
Sbjct: 1   SVKLDVALGVGGYPKGRIIEVYGPESSGKTTIALHAVAEVQKAGGTAAYIDAENALDVKY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A  LGV    LL+SQPDTGEQ LEI D LV+SGAVDIIVIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AEALGVQKDELLLSQPDTGEQGLEIADALVQSGAVDIIVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            G+QARLMSQALRKL  +++R+  I +FINQ+R KIGVMFG+PE
Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGVMFGNPE 164


>gi|32345044|gb|AAM93532.1| RecA protein [Rickettsia typhi str. Wilmington]
          Length = 153

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 113/153 (73%), Positives = 134/153 (87%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALGIGG PKGRI+EI+GPESSGKTTL LH IA+SQK GGTCAF+DAEHALD  Y
Sbjct: 1   SLGLDIALGIGGVPKGRIIEIFGPESSGKTTLTLHLIAESQKNGGTCAFIDAEHALDPAY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+KLGV++  L+ISQPDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++ 
Sbjct: 61  AKKLGVNIDELIISQPDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQ 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              QARLMSQALRKLT+SI+R+ CI VFINQ+ 
Sbjct: 121 MASQARLMSQALRKLTASINRTNCITVFINQIE 153


>gi|38602325|emb|CAD58018.1| recombinase A [Gluconacetobacter xylinus]
          Length = 152

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 121/152 (79%), Positives = 139/152 (91%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGA+D++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT S+SRS  +L+F+
Sbjct: 1   VRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGSVSRSNTMLIFL 60

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+R+KIGVMFGSPETTTGGNAL FY+SVR+DIRR+GSIKDKD +TGNQTRVKVVKNKMA
Sbjct: 61  NQIRLKIGVMFGSPETTTGGNALNFYASVRMDIRRIGSIKDKDKVTGNQTRVKVVKNKMA 120

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
            PF+QVEFDIMYGEGIS  GELIDLGVKA IV
Sbjct: 121 PPFRQVEFDIMYGEGISKVGELIDLGVKAGIV 152


>gi|38602333|emb|CAD58022.1| recombinase A [Acetobacter indonesiensis]
          Length = 152

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 115/152 (75%), Positives = 136/152 (89%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           V SG + ++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT S++RS  +++F+
Sbjct: 1   VXSGXIPVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGSVARSNTMMIFL 60

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+R+KIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIKDKD + GNQTRVKVVKNKMA
Sbjct: 61  NQIRLKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKDKDEVVGNQTRVKVVKNKMA 120

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
            PF+QVEFDIMYGEGIS  GELIDLGVKA +V
Sbjct: 121 PPFRQVEFDIMYGEGISKVGELIDLGVKAGVV 152


>gi|38602323|emb|CAD58017.1| recombinase A [Gluconacetobacter xylinus]
          Length = 152

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 122/152 (80%), Positives = 140/152 (92%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGA+D++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT S+SRS  +L+F+
Sbjct: 1   VRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGSVSRSNTMLIFL 60

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+R+KIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDKD +TGNQTRVKVVKNKMA
Sbjct: 61  NQIRLKIGVMFGSPETTTGGNALKFYASVRMDIRRIGSIKDKDEVTGNQTRVKVVKNKMA 120

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
            PF+QVEFDIMYGEGIS  GELIDLGVKA IV
Sbjct: 121 PPFRQVEFDIMYGEGISKVGELIDLGVKAGIV 152


>gi|224174412|emb|CAR92624.1| recombinase A [Bradyrhizobium elkanii]
          Length = 147

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 107/147 (72%), Positives = 128/147 (87%), Gaps = 1/147 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LG        +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+
Sbjct: 1   SVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V
Sbjct: 60  GQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQAR 177
           +DSVAAL P+AE+EG+MG++LPG+QAR
Sbjct: 120 VDSVAALVPKAELEGEMGDALPGLQAR 146


>gi|167554598|dbj|BAG06998.1| recombinaseA [Leuconostoc gelidum]
          Length = 164

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 114/164 (69%), Positives = 139/164 (84%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG+PKGRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  Y
Sbjct: 1   SVKLDVALGVGGYPKGRIIEVYGPESSGKTTIALHAVAEVQKAGGTAAYIDAENALDVKY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A  LGV    LL+SQPDTGEQ LEI D LV+SGAVDI+VIDSVAAL PRAEIEG+MG+S 
Sbjct: 61  AEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDIVVIDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            G+QARLMSQALRKL  +++R+  I +FINQ+R KIGVMFG+PE
Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGVMFGNPE 164


>gi|167554610|dbj|BAG07004.1| recombinaseA [Leuconostoc inhae]
          Length = 164

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 114/164 (69%), Positives = 139/164 (84%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG+PKGRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  Y
Sbjct: 1   SVKLDVALGVGGYPKGRIIEVYGPESSGKTTIALHAVAEVQKAGGTAAYIDAENALDVKY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A  LGV    LL+SQPDTGEQ LEI D LV+SGAVDIIV+DSVAAL PRAEIEG+MG+S 
Sbjct: 61  AEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDIIVVDSVAALVPRAEIEGEMGDSH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            G+QARLMSQALRKL  +++R+  I +FINQ+R KIGVMFG+PE
Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGVMFGNPE 164


>gi|325305318|gb|ADZ06007.1| RecA [Aeromonas veronii bv. veronii]
 gi|325305320|gb|ADZ06008.1| RecA [Aeromonas allosaccharophila]
          Length = 166

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 127/166 (76%), Positives = 150/166 (90%)

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DS
Sbjct: 1   KGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDS 60

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           VAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGS
Sbjct: 61  VAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGS 120

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
           PETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+TRVKVVKNK+
Sbjct: 121 PETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNETRVKVVKNKV 166


>gi|38602327|emb|CAD58019.1| recombinase A [Gluconacetobacter xylinus]
          Length = 152

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 123/152 (80%), Positives = 140/152 (92%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGAVD++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT S+SRS  +L+F+
Sbjct: 1   VRSGAVDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGSVSRSNTMLIFL 60

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+R+KIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDKD +TGNQTRVKVVKNKMA
Sbjct: 61  NQIRLKIGVMFGSPETTTGGNALKFYASVRMDIRRIGSIKDKDKVTGNQTRVKVVKNKMA 120

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
            PF+QVEFDIMYGEGIS  GELIDLGVKA IV
Sbjct: 121 PPFRQVEFDIMYGEGISKVGELIDLGVKAGIV 152


>gi|224174420|emb|CAR92628.1| recombinase A [Bradyrhizobium yuanmingense]
 gi|224174422|emb|CAR92629.1| recombinase A [Bradyrhizobium yuanmingense]
 gi|224174432|emb|CAR92634.1| recombinase A [Bradyrhizobium sp. LMG 11950]
 gi|224174434|emb|CAR92635.1| recombinase A [Bradyrhizobium sp. LMG 11955]
          Length = 147

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 110/147 (74%), Positives = 129/147 (87%), Gaps = 1/147 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LG        IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A+
Sbjct: 1   SVMKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V
Sbjct: 60  AQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQAR 177
           +DSVAAL P+AE+EG+MG++LPG+QAR
Sbjct: 120 VDSVAALVPKAELEGEMGDALPGLQAR 146


>gi|213420540|ref|ZP_03353606.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 123

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 80/119 (67%), Positives = 95/119 (79%), Gaps = 2/119 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6   NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDT
Sbjct: 64  EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDT 122


>gi|325512793|gb|ADZ23585.1| RecA [Bradyrhizobium liaoningense]
          Length = 153

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 120/154 (77%), Positives = 136/154 (88%), Gaps = 1/154 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG        IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK 
Sbjct: 1   LGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKK 59

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSV
Sbjct: 60  GGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDSV 119

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           AAL P+AE+EG+MG++LPG+QARLMSQALRKLT+
Sbjct: 120 AALVPKAELEGEMGDALPGLQARLMSQALRKLTA 153


>gi|213012378|gb|ACJ38755.1| recombination-repair protein [Vibrio fortis]
          Length = 169

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 122/169 (72%), Positives = 150/169 (88%)

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE
Sbjct: 1   HALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEIE 60

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 61  GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 120

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           FY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ E  I+YG
Sbjct: 121 FYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQAETQILYG 169


>gi|224174404|emb|CAR92620.1| recombinase A [Bradyrhizobium betae]
 gi|224174406|emb|CAR92621.1| recombinase A [Bradyrhizobium betae]
          Length = 147

 Score =  156 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 107/147 (72%), Positives = 129/147 (87%), Gaps = 1/147 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LG        +E +SSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A+
Sbjct: 1   SVMKLGKNDRSM-DVEAISSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V
Sbjct: 60  AQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQAR 177
           +DSVAAL P+AE+EG+MG++LPG+QAR
Sbjct: 120 VDSVAALVPKAELEGEMGDALPGLQAR 146


>gi|224174424|emb|CAR92630.1| recombinase A [Bradyrhizobium sp. LMG 10727]
 gi|224174426|emb|CAR92631.1| recombinase A [Bradyrhizobium sp. LMG 15269]
          Length = 147

 Score =  156 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 110/147 (74%), Positives = 130/147 (88%), Gaps = 1/147 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LG +      IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A+
Sbjct: 1   SVMKLG-KSDRSMDIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V
Sbjct: 60  AQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQAR 177
           +DSVAAL P+AE+EG+MG++LPG+QAR
Sbjct: 120 VDSVAALVPKAELEGEMGDALPGLQAR 146


>gi|172088019|dbj|BAG16816.1| recombinaseA [Weissella viridescens]
          Length = 164

 Score =  156 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 112/164 (68%), Positives = 140/164 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SL LDIALGIGG+PKGRIVEIYGPESSGKTTLALH  A++QK GG  A++DAE+A+D  Y
Sbjct: 1   SLKLDIALGIGGYPKGRIVEIYGPESSGKTTLALHAAAEAQKNGGIVAYIDAENAIDVQY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           AR LGVD+  LL+SQPDTGEQ L I D L+ SGAVD++V+DSVAALTP+AEI+G++G+S 
Sbjct: 61  ARALGVDVDELLLSQPDTGEQGLAIADELISSGAVDLVVVDSVAALTPKAEIDGEIGDST 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            G+QAR+MSQALRK++ SI ++   ++FINQ+R KIGVMFG+PE
Sbjct: 121 VGLQARMMSQALRKMSGSILKTGTTVIFINQLREKIGVMFGNPE 164


>gi|224174428|emb|CAR92632.1| recombinase A [Bradyrhizobium sp. LMG 10677]
 gi|224174430|emb|CAR92633.1| recombinase A [Bradyrhizobium sp. LMG 10691]
 gi|224174440|emb|CAR92638.1| recombinase A [Bradyrhizobium sp. LMG 15176]
 gi|224174442|emb|CAR92639.1| recombinase A [Bradyrhizobium sp. LMG 15181]
 gi|224174450|emb|CAR92643.1| recombinase A [Bradyrhizobium sp. LMG 10705]
 gi|224174452|emb|CAR92644.1| recombinase A [Bradyrhizobium sp. LMG 10706]
          Length = 147

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 109/147 (74%), Positives = 128/147 (87%), Gaps = 1/147 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LG        +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+
Sbjct: 1   SVMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V
Sbjct: 60  GQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQAR 177
           IDSVAAL P+AE+EG+MG++LPG+QAR
Sbjct: 120 IDSVAALVPKAELEGEMGDALPGLQAR 146


>gi|158631804|gb|ABW75007.1| RecA [Rhizobium sp. CCBAU 83526]
          Length = 167

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 119/154 (77%), Positives = 139/154 (90%)

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
            ALG+ G P+GR +  +  ESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLG
Sbjct: 14  TALGVCGLPRGRFINPWPKESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLG 73

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           VDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QA
Sbjct: 74  VDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQA 133

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           RLMSQALRKLT+SIS+S  +++FINQ+RMKIGVM
Sbjct: 134 RLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 167


>gi|257812111|gb|ACV69923.1| RecA [Mesorhizobium robiniae]
          Length = 138

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 115/138 (83%), Positives = 130/138 (94%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHA
Sbjct: 1   TVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+
Sbjct: 61  LDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGE 120

Query: 167 MGESLPGMQARLMSQALR 184
           MG+SLPG+QARLMSQALR
Sbjct: 121 MGDSLPGLQARLMSQALR 138


>gi|291042496|gb|ADD71873.1| RecA [Rhizobium sp. W3]
          Length = 134

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 106/135 (78%), Positives = 122/135 (90%), Gaps = 1/135 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG+  S+ E +E VS+GSL LDIALGIGG PKGRI+E+YGPESSGKTTLAL T
Sbjct: 1   GKGSIMKLGANESVVE-VETVSTGSLSLDIALGIGGLPKGRIIEVYGPESSGKTTLALQT 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA++QK GG CAFVDAEHALD +YARKLGV L+NLLISQPDTGEQALEITD LVRSGA+D
Sbjct: 60  IAEAQKKGGICAFVDAEHALDPVYARKLGVXLQNLLISQPDTGEQALEITDTLVRSGAID 119

Query: 148 IIVIDSVAALTPRAE 162
           ++V+DSVAALTPRAE
Sbjct: 120 VLVVDSVAALTPRAE 134


>gi|224174414|emb|CAR92625.1| recombinase A [Bradyrhizobium japonicum]
 gi|224174474|emb|CAR92655.1| recombinase A [Bradyrhizobium sp. RLA08]
 gi|224174476|emb|CAR92656.1| recombinase A [Bradyrhizobium sp. RLA09]
 gi|224174478|emb|CAR92657.1| recombinase A [Bradyrhizobium sp. RLA10]
 gi|224174480|emb|CAR92658.1| recombinase A [Bradyrhizobium sp. RLA11]
          Length = 147

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 108/147 (73%), Positives = 129/147 (87%), Gaps = 1/147 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A+
Sbjct: 1   SVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V
Sbjct: 60  AQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQAR 177
           +DSVAAL P+AE+EG+MG++LPG+QAR
Sbjct: 120 VDSVAALVPKAELEGEMGDALPGLQAR 146


>gi|212286516|dbj|BAG82904.1| RecA protein [Rhizobium sp. Cg-A3]
          Length = 145

 Score =  155 bits (392), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 118/145 (81%), Positives = 132/145 (91%), Gaps = 1/145 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LGS   I E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA+SQ
Sbjct: 1   MKLGSNERIVE-IEQVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAESQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQAR 177
           SVAALTPRAEIEG+MG++LPG+QAR
Sbjct: 120 SVAALTPRAEIEGEMGDNLPGLQAR 144


>gi|119874726|gb|ABM05840.1| RecA [Yersinia pestis]
          Length = 153

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 105/151 (69%), Positives = 126/151 (83%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTLAL  IA +Q+ G TCAF+DA
Sbjct: 3   DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLALQVIAAAQREGKTCAFIDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEI
Sbjct: 63  EHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EG++G+S  G+ AR+MSQA+RKL  ++  + 
Sbjct: 123 EGEIGDSHMGLAARMMSQAMRKLAGNLKNAN 153


>gi|269929427|gb|ACZ53609.1| RecA protein [Lactobacillus reuteri]
 gi|269929429|gb|ACZ53610.1| RecA protein [Lactobacillus reuteri]
 gi|269929431|gb|ACZ53611.1| RecA protein [Lactobacillus reuteri]
 gi|269929433|gb|ACZ53612.1| RecA protein [Lactobacillus reuteri]
 gi|269929435|gb|ACZ53613.1| RecA protein [Lactobacillus reuteri ATCC 53608]
 gi|269929437|gb|ACZ53614.1| RecA protein [Lactobacillus reuteri]
 gi|269929439|gb|ACZ53615.1| RecA protein [Lactobacillus reuteri]
 gi|269929441|gb|ACZ53616.1| RecA protein [Lactobacillus reuteri]
 gi|269929443|gb|ACZ53617.1| RecA protein [Lactobacillus reuteri]
 gi|269929445|gb|ACZ53618.1| RecA protein [Lactobacillus reuteri]
 gi|269929447|gb|ACZ53619.1| RecA protein [Lactobacillus reuteri]
 gi|269929449|gb|ACZ53620.1| RecA protein [Lactobacillus reuteri]
 gi|269929451|gb|ACZ53621.1| RecA protein [Lactobacillus reuteri]
 gi|269929453|gb|ACZ53622.1| RecA protein [Lactobacillus reuteri]
 gi|269929455|gb|ACZ53623.1| RecA protein [Lactobacillus reuteri]
 gi|269929457|gb|ACZ53624.1| RecA protein [Lactobacillus reuteri]
 gi|269929459|gb|ACZ53625.1| RecA protein [Lactobacillus reuteri]
 gi|269929461|gb|ACZ53626.1| RecA protein [Lactobacillus reuteri]
 gi|269929463|gb|ACZ53627.1| RecA protein [Lactobacillus reuteri]
 gi|269929465|gb|ACZ53628.1| RecA protein [Lactobacillus reuteri]
 gi|269929467|gb|ACZ53629.1| RecA protein [Lactobacillus reuteri]
 gi|269929469|gb|ACZ53630.1| RecA protein [Lactobacillus reuteri]
 gi|269929471|gb|ACZ53631.1| RecA protein [Lactobacillus reuteri]
 gi|269929473|gb|ACZ53632.1| RecA protein [Lactobacillus reuteri ATCC 53608]
 gi|269929475|gb|ACZ53633.1| RecA protein [Lactobacillus reuteri]
 gi|269929477|gb|ACZ53634.1| RecA protein [Lactobacillus reuteri]
 gi|269929479|gb|ACZ53635.1| RecA protein [Lactobacillus reuteri]
 gi|269929481|gb|ACZ53636.1| RecA protein [Lactobacillus reuteri]
 gi|269929483|gb|ACZ53637.1| RecA protein [Lactobacillus reuteri]
 gi|269929485|gb|ACZ53638.1| RecA protein [Lactobacillus reuteri]
 gi|269929487|gb|ACZ53639.1| RecA protein [Lactobacillus reuteri]
 gi|269929489|gb|ACZ53640.1| RecA protein [Lactobacillus reuteri]
 gi|269929491|gb|ACZ53641.1| RecA protein [Lactobacillus reuteri]
 gi|269929493|gb|ACZ53642.1| RecA protein [Lactobacillus reuteri]
 gi|269929495|gb|ACZ53643.1| RecA protein [Lactobacillus reuteri]
 gi|269929497|gb|ACZ53644.1| RecA protein [Lactobacillus reuteri]
 gi|269929499|gb|ACZ53645.1| RecA protein [Lactobacillus reuteri]
 gi|269929501|gb|ACZ53646.1| RecA protein [Lactobacillus reuteri]
 gi|269929503|gb|ACZ53647.1| RecA protein [Lactobacillus reuteri]
 gi|269929505|gb|ACZ53648.1| RecA protein [Lactobacillus reuteri]
 gi|269929507|gb|ACZ53649.1| RecA protein [Lactobacillus reuteri]
 gi|269929509|gb|ACZ53650.1| RecA protein [Lactobacillus reuteri]
 gi|269929511|gb|ACZ53651.1| RecA protein [Lactobacillus reuteri DSM 20016]
 gi|269929513|gb|ACZ53652.1| RecA protein [Lactobacillus reuteri]
 gi|269929515|gb|ACZ53653.1| RecA protein [Lactobacillus reuteri]
 gi|269929517|gb|ACZ53654.1| RecA protein [Lactobacillus reuteri]
 gi|269929519|gb|ACZ53655.1| RecA protein [Lactobacillus reuteri]
 gi|269929521|gb|ACZ53656.1| RecA protein [Lactobacillus reuteri]
 gi|269929523|gb|ACZ53657.1| RecA protein [Lactobacillus reuteri]
 gi|269929525|gb|ACZ53658.1| RecA protein [Lactobacillus reuteri]
 gi|269929527|gb|ACZ53659.1| RecA protein [Lactobacillus reuteri]
 gi|269929529|gb|ACZ53660.1| RecA protein [Lactobacillus reuteri]
 gi|269929531|gb|ACZ53661.1| RecA protein [Lactobacillus reuteri]
 gi|269929533|gb|ACZ53662.1| RecA protein [Lactobacillus reuteri]
 gi|269929535|gb|ACZ53663.1| RecA protein [Lactobacillus reuteri]
 gi|269929537|gb|ACZ53664.1| RecA protein [Lactobacillus reuteri]
 gi|269929539|gb|ACZ53665.1| RecA protein [Lactobacillus reuteri]
 gi|269929541|gb|ACZ53666.1| RecA protein [Lactobacillus reuteri]
 gi|269929543|gb|ACZ53667.1| RecA protein [Lactobacillus reuteri]
 gi|269929545|gb|ACZ53668.1| RecA protein [Lactobacillus reuteri]
 gi|269929547|gb|ACZ53669.1| RecA protein [Lactobacillus reuteri]
 gi|269929549|gb|ACZ53670.1| RecA protein [Lactobacillus reuteri]
 gi|269929551|gb|ACZ53671.1| RecA protein [Lactobacillus reuteri]
 gi|269929553|gb|ACZ53672.1| RecA protein [Lactobacillus reuteri]
 gi|269929555|gb|ACZ53673.1| RecA protein [Lactobacillus reuteri]
 gi|269929557|gb|ACZ53674.1| RecA protein [Lactobacillus reuteri]
 gi|269929559|gb|ACZ53675.1| RecA protein [Lactobacillus reuteri]
 gi|269929561|gb|ACZ53676.1| RecA protein [Lactobacillus reuteri]
 gi|269929563|gb|ACZ53677.1| RecA protein [Lactobacillus reuteri]
 gi|269929565|gb|ACZ53678.1| RecA protein [Lactobacillus reuteri]
 gi|269929567|gb|ACZ53679.1| RecA protein [Lactobacillus reuteri]
 gi|269929569|gb|ACZ53680.1| RecA protein [Lactobacillus reuteri]
 gi|269929571|gb|ACZ53681.1| RecA protein [Lactobacillus reuteri]
 gi|269929573|gb|ACZ53682.1| RecA protein [Lactobacillus reuteri]
 gi|269929575|gb|ACZ53683.1| RecA protein [Lactobacillus reuteri lpuph]
 gi|269929577|gb|ACZ53684.1| RecA protein [Lactobacillus reuteri]
 gi|269929579|gb|ACZ53685.1| RecA protein [Lactobacillus reuteri]
 gi|269929581|gb|ACZ53686.1| RecA protein [Lactobacillus reuteri]
 gi|269929583|gb|ACZ53687.1| RecA protein [Lactobacillus reuteri]
 gi|269929585|gb|ACZ53688.1| RecA protein [Lactobacillus reuteri]
 gi|269929587|gb|ACZ53689.1| RecA protein [Lactobacillus reuteri]
 gi|269929589|gb|ACZ53690.1| RecA protein [Lactobacillus reuteri]
 gi|269929591|gb|ACZ53691.1| RecA protein [Lactobacillus reuteri]
 gi|269929593|gb|ACZ53692.1| RecA protein [Lactobacillus reuteri]
 gi|269929595|gb|ACZ53693.1| RecA protein [Lactobacillus reuteri]
 gi|269929597|gb|ACZ53694.1| RecA protein [Lactobacillus reuteri mlc3]
 gi|269929599|gb|ACZ53695.1| RecA protein [Lactobacillus reuteri]
 gi|269929601|gb|ACZ53696.1| RecA protein [Lactobacillus reuteri]
 gi|269929603|gb|ACZ53697.1| RecA protein [Lactobacillus reuteri]
 gi|269929605|gb|ACZ53698.1| RecA protein [Lactobacillus reuteri]
 gi|269929607|gb|ACZ53699.1| RecA protein [Lactobacillus reuteri]
 gi|269929609|gb|ACZ53700.1| RecA protein [Lactobacillus reuteri]
 gi|269929611|gb|ACZ53701.1| RecA protein [Lactobacillus reuteri]
 gi|269929613|gb|ACZ53702.1| RecA protein [Lactobacillus reuteri]
 gi|269929615|gb|ACZ53703.1| RecA protein [Lactobacillus reuteri]
 gi|269929617|gb|ACZ53704.1| RecA protein [Lactobacillus reuteri]
 gi|269929619|gb|ACZ53705.1| RecA protein [Lactobacillus reuteri]
 gi|269929621|gb|ACZ53706.1| RecA protein [Lactobacillus reuteri]
 gi|269929623|gb|ACZ53707.1| RecA protein [Lactobacillus reuteri]
 gi|269929625|gb|ACZ53708.1| RecA protein [Lactobacillus reuteri]
 gi|269929627|gb|ACZ53709.1| RecA protein [Lactobacillus reuteri]
 gi|269929629|gb|ACZ53710.1| RecA protein [Lactobacillus reuteri]
 gi|269929631|gb|ACZ53711.1| RecA protein [Lactobacillus reuteri]
 gi|269929633|gb|ACZ53712.1| RecA protein [Lactobacillus reuteri]
 gi|269929635|gb|ACZ53713.1| RecA protein [Lactobacillus reuteri]
 gi|269929637|gb|ACZ53714.1| RecA protein [Lactobacillus reuteri]
 gi|269929641|gb|ACZ53716.1| RecA protein [Lactobacillus reuteri]
 gi|269929643|gb|ACZ53717.1| RecA protein [Lactobacillus reuteri]
 gi|269929645|gb|ACZ53718.1| RecA protein [Lactobacillus reuteri]
 gi|269929647|gb|ACZ53719.1| RecA protein [Lactobacillus reuteri]
 gi|269929649|gb|ACZ53720.1| RecA protein [Lactobacillus reuteri]
 gi|269929651|gb|ACZ53721.1| RecA protein [Lactobacillus reuteri]
 gi|269929653|gb|ACZ53722.1| RecA protein [Lactobacillus reuteri]
 gi|269929655|gb|ACZ53723.1| RecA protein [Lactobacillus reuteri]
 gi|269929657|gb|ACZ53724.1| RecA protein [Lactobacillus reuteri]
          Length = 175

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 110/175 (62%), Positives = 145/175 (82%)

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
            YA  LGV++ +LL+SQPD+GE+ LEI D L+ SGAVD++++DSVAAL PRAEI+GDMG+
Sbjct: 1   QYAEALGVNIDDLLLSQPDSGEEGLEIADALISSGAVDLVIVDSVAALVPRAEIDGDMGD 60

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           +  G+QARLMSQALRKL+  I+++K I +FINQ+R K+GVMFG+PETTTGG ALKFYS++
Sbjct: 61  THVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTTGGRALKFYSTI 120

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           R++IRR   IK+   + GN+ +VK+VKNK+A PFK+ E DIMYGEGIS  GEL+D
Sbjct: 121 RMEIRRAEQIKNGTDVIGNKAKVKIVKNKVAPPFKRCEVDIMYGEGISKTGELLD 175


>gi|213012336|gb|ACJ38734.1| recombination-repair protein [Photobacterium sp. R-34]
          Length = 169

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 120/169 (71%), Positives = 145/169 (85%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAF+DAEHALD    +KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLEAIACAQKAGKTCAFIDAEHALDPSTLKKLGVDIDQLLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D +
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEV 169


>gi|224174416|emb|CAR92626.1| recombinase A [Bradyrhizobium liaoningense]
 gi|224174418|emb|CAR92627.1| recombinase A [Bradyrhizobium liaoningense]
          Length = 147

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 111/147 (75%), Positives = 129/147 (87%), Gaps = 1/147 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LG        IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A+
Sbjct: 1   SVMKLGKNDRSM-DIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V
Sbjct: 60  AQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQAR 177
           IDSVAAL P+AE+EG+MG++LPG+QAR
Sbjct: 120 IDSVAALVPKAELEGEMGDALPGLQAR 146


>gi|38602309|emb|CAD58010.1| recombinase A [Gluconacetobacter hansenii]
          Length = 152

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 118/152 (77%), Positives = 135/152 (88%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGA D++VIDSVAAL PRAE+ G  G+S  G+ ARLMSQALRKLT S+SRS  +++F+
Sbjct: 1   VRSGAXDVLVIDSVAALVPRAELXGXXGDSHVGLHARLMSQALRKLTGSVSRSNTMMIFL 60

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+R+KIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDKD + GNQTRVKVVKNKMA
Sbjct: 61  NQIRLKIGVMFGSPETTTGGNALKFYASVRMDIRRIGSIKDKDEVVGNQTRVKVVKNKMA 120

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
            PF+QVEFDIMYGEGIS  GELIDLGVKA IV
Sbjct: 121 PPFRQVEFDIMYGEGISKMGELIDLGVKAGIV 152


>gi|269929639|gb|ACZ53715.1| RecA protein [Lactobacillus reuteri]
          Length = 175

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 110/175 (62%), Positives = 146/175 (83%)

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
            YA  LGV++ +LL+SQPD+GE+ LEI D+L+ SGAVD++++DSVAAL PRAEI+GDMG+
Sbjct: 1   QYAEALGVNIDDLLLSQPDSGEEGLEIADVLISSGAVDLVIVDSVAALVPRAEIDGDMGD 60

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           +  G+QARLMSQALRKL+  I+++K I +FINQ+R K+GVMFG+PETTTGG ALKFYS++
Sbjct: 61  THVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTTGGRALKFYSTI 120

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           R++IRR   IK+   + GN+ +VK+VKNK+A PFK+ E DIMYGEGIS  GEL+D
Sbjct: 121 RMEIRRAEQIKNGTDVIGNKAKVKIVKNKVAPPFKRCEVDIMYGEGISKTGELLD 175


>gi|223950663|emb|CAX46389.1| recombination protein A [Shinella sp. DC-196]
          Length = 147

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 119/148 (80%), Positives = 135/148 (91%), Gaps = 1/148 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG + S+ E +E VS+GSL LD+ALGIGG PKGRI+EIYGPESSGKTTLAL TIA+SQK
Sbjct: 1   KLGGKDSVIE-VETVSTGSLSLDVALGIGGLPKGRIIEIYGPESSGKTTLALQTIAESQK 59

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DS
Sbjct: 60  KGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDS 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQ 181
           VAALTPRAEIEG+MGESLP +QARLMSQ
Sbjct: 120 VAALTPRAEIEGEMGESLPALQARLMSQ 147


>gi|167554600|dbj|BAG06999.1| recombinaseA [Leuconostoc pseudomesenteroides]
          Length = 164

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 113/164 (68%), Positives = 139/164 (84%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LDIALG+GG+PKGRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  Y
Sbjct: 1   SVKLDIALGVGGYPKGRIIEVYGPESSGKTTIALHAVAEVQKQGGTAAYIDAENALDVKY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A  LGV    LL+SQPDTGEQ LEI D LV+SGAVD+IVIDSVAAL PRAEIEG+MG++ 
Sbjct: 61  AEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDMIVIDSVAALVPRAEIEGEMGDAH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            G+QARLMSQALRKL  +++R+  I +FINQ+R K+GVMFG+PE
Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPE 164


>gi|223950659|emb|CAX46387.1| recombination protein A [Shinella granuli]
          Length = 146

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 121/142 (85%), Positives = 134/142 (94%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE VS+GSL LD+ALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QKTGG CAFVDA
Sbjct: 5   EIETVSTGSLSLDVALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKTGGICAFVDA 64

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEI
Sbjct: 65  EHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEI 124

Query: 164 EGDMGESLPGMQARLMSQALRK 185
           EG+MGESLPG+QARLMSQALRK
Sbjct: 125 EGEMGESLPGLQARLMSQALRK 146


>gi|172088023|dbj|BAG16818.1| recombinaseA [Weissella confusa]
          Length = 164

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 105/164 (64%), Positives = 140/164 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SL LD+ALGIGG+PKGRI+EIYGPESSGKTTLALH +A++Q+ GG  A++DAE+A+D  Y
Sbjct: 1   SLKLDVALGIGGYPKGRIIEIYGPESSGKTTLALHAVAEAQRNGGIVAYIDAENAMDVEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD+  LL+SQPDTGEQ L I D L+ SGA+D++V+DSVAALTP+AEI+G++G+S 
Sbjct: 61  AKALGVDVDELLLSQPDTGEQGLAIADALITSGAIDMVVVDSVAALTPKAEIDGEIGDST 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            G+QAR+MSQALRK++ +I ++    +FINQ+R KIG+MFG+PE
Sbjct: 121 VGLQARMMSQALRKMSGAILKTGTTAIFINQLREKIGIMFGNPE 164


>gi|195542194|gb|ACF98307.1| RecA [Rhizobium sp. CCBAU 45121]
          Length = 161

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 122/152 (80%), Positives = 143/152 (94%)

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
           + LG+GG P+GRI++IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLG
Sbjct: 10  MVLGVGGRPRGRIIKIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLG 69

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           VDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QA
Sbjct: 70  VDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQA 129

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           RLMSQALRKLT+SIS+S  +++FINQ+RMKIG
Sbjct: 130 RLMSQALRKLTASISKSNTMVIFINQIRMKIG 161


>gi|224174410|emb|CAR92623.1| recombinase A [Bradyrhizobium canariense]
 gi|224174458|emb|CAR92647.1| recombinase A [Bradyrhizobium sp. MCLA07]
 gi|224174460|emb|CAR92648.1| recombinase A [Bradyrhizobium sp. MCLA12]
 gi|224174462|emb|CAR92649.1| recombinase A [Bradyrhizobium sp. MCLA22]
 gi|224174464|emb|CAR92650.1| recombinase A [Bradyrhizobium sp. MCLA23]
 gi|224174466|emb|CAR92651.1| recombinase A [Bradyrhizobium sp. MCAH03]
 gi|224174468|emb|CAR92652.1| recombinase A [Bradyrhizobium sp. MCAH06]
 gi|224174470|emb|CAR92653.1| recombinase A [Bradyrhizobium sp. MCAH12]
 gi|224174472|emb|CAR92654.1| recombinase A [Bradyrhizobium sp. MCAH13]
 gi|224174482|emb|CAR92659.1| recombinase A [Bradyrhizobium sp. MCOC04]
 gi|224174484|emb|CAR92660.1| recombinase A [Bradyrhizobium sp. MCOC05]
 gi|224174486|emb|CAR92661.1| recombinase A [Bradyrhizobium sp. MCOC23]
 gi|224174488|emb|CAR92662.1| recombinase A [Bradyrhizobium sp. MCOC24]
          Length = 147

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 109/147 (74%), Positives = 128/147 (87%), Gaps = 1/147 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A+
Sbjct: 1   SVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V
Sbjct: 60  GQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQAR 177
           IDSVAAL P+AE+EG+MG++LPG+QAR
Sbjct: 120 IDSVAALVPKAELEGEMGDALPGLQAR 146


>gi|37727947|gb|AAR02357.1| RecA [Borrelia miyamotoi]
          Length = 191

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 121/188 (64%), Positives = 156/188 (82%), Gaps = 2/188 (1%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA+ QK+GG  AF+DAEHALD +YA+ LGV++  L +SQPDTGEQALEI + L+
Sbjct: 2   TLTLQAIAEVQKSGGIAAFIDAEHALDPVYAKALGVNIDELWLSQPDTGEQALEIAEYLI 61

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSG VD+IVIDSVAALTP+AEI+G+MG+S  G+QARLMS+ALRK+T  +S+S   ++FIN
Sbjct: 62  RSGGVDLIVIDSVAALTPQAEIDGEMGDSQIGLQARLMSKALRKITGILSKSNTCIMFIN 121

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI--KDKDSITGNQTRVKVVKNKM 259
           Q+RMKIGVMFG+PETTTGGNALKFYSS+RL++R++  +     D + GN+ RVKVVKNK+
Sbjct: 122 QIRMKIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTGTSADDVIGNKIRVKVVKNKV 181

Query: 260 ASPFKQVE 267
           A PF++VE
Sbjct: 182 APPFRKVE 189


>gi|119874724|gb|ABM05839.1| RecA [Yersinia pestis]
          Length = 153

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 104/151 (68%), Positives = 125/151 (82%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DA
Sbjct: 3   DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEI
Sbjct: 63  EHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EG++G+S  G+ AR+MSQA+RKL  ++  + 
Sbjct: 123 EGEIGDSHMGLAARMMSQAMRKLAGNLKNAN 153


>gi|158147291|gb|ABW22699.1| recA [Bradyrhizobium liaoningense]
          Length = 150

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 117/150 (78%), Positives = 139/150 (92%)

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
           IALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLG
Sbjct: 1   IALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLG 60

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           V++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QA
Sbjct: 61  VNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELEGEMGDALPGLQA 120

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMK 206
           RLMSQALRKLT+SI++S  +++FINQ+RMK
Sbjct: 121 RLMSQALRKLTASINKSNTMVIFINQIRMK 150


>gi|38602343|emb|CAD58027.1| recombinase A [Acetobacter tropicalis]
          Length = 152

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 119/152 (78%), Positives = 138/152 (90%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGA+D++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT S++RS  +++F+
Sbjct: 1   VRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGSVARSNTMMIFL 60

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+R+KIGVMFG+PETTTGGNALKFY+SVRLDIRRVGSIKDKD   GNQTRVKVVKNKMA
Sbjct: 61  NQIRLKIGVMFGNPETTTGGNALKFYASVRLDIRRVGSIKDKDEGWGNQTRVKVVKNKMA 120

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
            PF+QVEFDIMYGEGIS  GELIDLGVKA +V
Sbjct: 121 PPFRQVEFDIMYGEGISKVGELIDLGVKAGVV 152


>gi|90856191|gb|ABE01387.1| recombination protein A [Mesorhizobium mediterraneum]
          Length = 143

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 112/143 (78%), Positives = 130/143 (90%), Gaps = 1/143 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG+   + E IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK 
Sbjct: 1   LGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKK 59

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSV
Sbjct: 60  GGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSV 119

Query: 155 AALTPRAEIEGDMGESLPGMQAR 177
           AALTPRA+IEG+MG+SLPG+QAR
Sbjct: 120 AALTPRAKIEGEMGDSLPGLQAR 142


>gi|223950661|emb|CAX46388.1| recombination protein A [Shinella zoogloeoides]
          Length = 145

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 115/140 (82%), Positives = 129/140 (92%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E VS+GSL LD+ALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDA
Sbjct: 5   EVETVSTGSLSLDVALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDA 64

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEI
Sbjct: 65  EHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEI 124

Query: 164 EGDMGESLPGMQARLMSQAL 183
           EG+MGESLPG+QARLMSQ  
Sbjct: 125 EGEMGESLPGLQARLMSQRC 144


>gi|33087825|gb|AAP93043.1| recombination protein A [Yersinia intermedia ATCC 29909]
          Length = 133

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 96/135 (71%), Positives = 112/135 (82%), Gaps = 2/135 (1%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L 
Sbjct: 1   FGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQ 58

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAV
Sbjct: 59  VIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAV 118

Query: 147 DIIVIDSVAALTPRA 161
           D+I++DSVAALTP+A
Sbjct: 119 DVIIVDSVAALTPKA 133


>gi|38602311|emb|CAD58011.1| recombinase A [Gluconacetobacter oboediens]
          Length = 152

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 120/151 (79%), Positives = 138/151 (91%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGA+D++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT S+SRS  +L+F+
Sbjct: 1   VRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGSVSRSNTMLIFL 60

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+R+KIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDKD +TGNQTRVKVVKNKMA
Sbjct: 61  NQIRLKIGVMFGSPETTTGGNALKFYASVRMDIRRIGSIKDKDKVTGNQTRVKVVKNKMA 120

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASI 291
            PF+QVEFDIMYGEGIS  GELIDL VKA I
Sbjct: 121 PPFRQVEFDIMYGEGISKVGELIDLCVKAGI 151


>gi|213012460|gb|ACJ38796.1| recombination-repair protein [Vibrio sp. R-656]
          Length = 171

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 118/170 (69%), Positives = 150/170 (88%)

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           +DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+
Sbjct: 1   IDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPK 60

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
           AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGG
Sbjct: 61  AEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGG 120

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           NALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    I
Sbjct: 121 NALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 170


>gi|148645058|gb|ABR01055.1| RecA [uncultured Geobacter sp.]
          Length = 172

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 123/172 (71%), Positives = 149/172 (86%)

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTLALH IA++QKTGG  AFVDAEHALD  YARKLGV   +LL+SQPDTGEQALEI 
Sbjct: 1   SGKTTLALHIIAEAQKTGGIAAFVDAEHALDIGYARKLGVKTDDLLVSQPDTGEQALEIA 60

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           + LVRSGA+D++VIDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT+ IS+S C +
Sbjct: 61  ETLVRSGAIDVLVIDSVAALVPKAEIEGDMGDSHMGLQARLMSQALRKLTAIISKSNCCV 120

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
            FINQ+RMK+GVMFG+PETTTGGNALKFY+S+R+DIR++ S+K    + G++
Sbjct: 121 FFINQIRMKLGVMFGNPETTTGGNALKFYASIRMDIRKIASLKQGTDVIGSR 172


>gi|146431538|gb|ABQ40751.1| recombination-repair protein [Vibrio harveyi]
 gi|146431540|gb|ABQ40752.1| recombination-repair protein [Vibrio harveyi]
 gi|146431542|gb|ABQ40753.1| recombination-repair protein [Vibrio harveyi]
 gi|146431544|gb|ABQ40754.1| recombination-repair protein [Vibrio harveyi]
 gi|146431546|gb|ABQ40755.1| recombination-repair protein [Vibrio harveyi]
 gi|146431548|gb|ABQ40756.1| recombination-repair protein [Vibrio harveyi]
 gi|146431550|gb|ABQ40757.1| recombination-repair protein [Vibrio harveyi]
 gi|146431552|gb|ABQ40758.1| recombination-repair protein [Vibrio harveyi]
 gi|146431554|gb|ABQ40759.1| recombination-repair protein [Vibrio harveyi]
 gi|146431556|gb|ABQ40760.1| recombination-repair protein [Vibrio harveyi]
 gi|146431558|gb|ABQ40761.1| recombination-repair protein [Vibrio harveyi]
 gi|146431560|gb|ABQ40762.1| recombination-repair protein [Vibrio harveyi]
 gi|146431562|gb|ABQ40763.1| recombination-repair protein [Vibrio harveyi]
 gi|146431564|gb|ABQ40764.1| recombination-repair protein [Vibrio harveyi]
 gi|146431566|gb|ABQ40765.1| recombination-repair protein [Vibrio harveyi]
 gi|146431568|gb|ABQ40766.1| recombination-repair protein [Vibrio harveyi]
 gi|146431570|gb|ABQ40767.1| recombination-repair protein [Vibrio harveyi]
 gi|146431572|gb|ABQ40768.1| recombination-repair protein [Vibrio harveyi]
 gi|146431574|gb|ABQ40769.1| recombination-repair protein [Vibrio harveyi]
 gi|146431576|gb|ABQ40770.1| recombination-repair protein [Vibrio harveyi]
 gi|146431578|gb|ABQ40771.1| recombination-repair protein [Vibrio harveyi]
 gi|146431580|gb|ABQ40772.1| recombination-repair protein [Vibrio harveyi]
 gi|146431582|gb|ABQ40773.1| recombination-repair protein [Vibrio harveyi]
 gi|146431584|gb|ABQ40774.1| recombination-repair protein [Vibrio harveyi]
 gi|146431586|gb|ABQ40775.1| recombination-repair protein [Vibrio harveyi]
 gi|146431588|gb|ABQ40776.1| recombination-repair protein [Vibrio harveyi]
 gi|146431590|gb|ABQ40777.1| recombination-repair protein [Vibrio harveyi]
 gi|146431592|gb|ABQ40778.1| recombination-repair protein [Vibrio harveyi]
 gi|146431594|gb|ABQ40779.1| recombination-repair protein [Vibrio harveyi]
 gi|146431596|gb|ABQ40780.1| recombination-repair protein [Vibrio harveyi]
 gi|146431598|gb|ABQ40781.1| recombination-repair protein [Vibrio harveyi]
 gi|146431600|gb|ABQ40782.1| recombination-repair protein [Vibrio harveyi]
 gi|146431602|gb|ABQ40783.1| recombination-repair protein [Vibrio harveyi]
 gi|146431604|gb|ABQ40784.1| recombination-repair protein [Vibrio harveyi]
 gi|146431606|gb|ABQ40785.1| recombination-repair protein [Vibrio harveyi]
 gi|146431608|gb|ABQ40786.1| recombination-repair protein [Vibrio harveyi]
 gi|146431610|gb|ABQ40787.1| recombination-repair protein [Vibrio harveyi]
 gi|146431612|gb|ABQ40788.1| recombination-repair protein [Vibrio harveyi]
 gi|146431614|gb|ABQ40789.1| recombination-repair protein [Vibrio harveyi]
 gi|146431616|gb|ABQ40790.1| recombination-repair protein [Vibrio harveyi]
 gi|146431618|gb|ABQ40791.1| recombination-repair protein [Vibrio harveyi]
 gi|146431620|gb|ABQ40792.1| recombination-repair protein [Vibrio harveyi]
 gi|146431622|gb|ABQ40793.1| recombination-repair protein [Vibrio harveyi]
 gi|146431624|gb|ABQ40794.1| recombination-repair protein [Vibrio harveyi]
 gi|146431626|gb|ABQ40795.1| recombination-repair protein [Vibrio harveyi]
 gi|146431628|gb|ABQ40796.1| recombination-repair protein [Vibrio harveyi]
 gi|146431630|gb|ABQ40797.1| recombination-repair protein [Vibrio harveyi]
 gi|146431632|gb|ABQ40798.1| recombination-repair protein [Vibrio harveyi]
 gi|146431634|gb|ABQ40799.1| recombination-repair protein [Vibrio harveyi]
 gi|146431636|gb|ABQ40800.1| recombination-repair protein [Vibrio harveyi]
 gi|146431638|gb|ABQ40801.1| recombination-repair protein [Vibrio harveyi]
 gi|146431640|gb|ABQ40802.1| recombination-repair protein [Vibrio harveyi]
 gi|146431642|gb|ABQ40803.1| recombination-repair protein [Vibrio harveyi]
 gi|146431644|gb|ABQ40804.1| recombination-repair protein [Vibrio harveyi]
 gi|146431646|gb|ABQ40805.1| recombination-repair protein [Vibrio harveyi]
 gi|146431648|gb|ABQ40806.1| recombination-repair protein [Vibrio harveyi]
 gi|146431650|gb|ABQ40807.1| recombination-repair protein [Vibrio harveyi]
 gi|146431652|gb|ABQ40808.1| recombination-repair protein [Vibrio harveyi]
 gi|146431654|gb|ABQ40809.1| recombination-repair protein [Vibrio harveyi]
 gi|146431656|gb|ABQ40810.1| recombination-repair protein [Vibrio harveyi]
 gi|146431658|gb|ABQ40811.1| recombination-repair protein [Vibrio harveyi]
 gi|146431660|gb|ABQ40812.1| recombination-repair protein [Vibrio harveyi]
 gi|146431662|gb|ABQ40813.1| recombination-repair protein [Vibrio harveyi]
 gi|146431664|gb|ABQ40814.1| recombination-repair protein [Vibrio harveyi]
 gi|146431666|gb|ABQ40815.1| recombination-repair protein [Vibrio harveyi]
 gi|146431668|gb|ABQ40816.1| recombination-repair protein [Vibrio harveyi]
 gi|146431670|gb|ABQ40817.1| recombination-repair protein [Vibrio communis]
 gi|146431672|gb|ABQ40818.1| recombination-repair protein [Vibrio harveyi]
 gi|146431674|gb|ABQ40819.1| recombination-repair protein [Vibrio harveyi]
 gi|146432074|gb|ABQ41019.1| recombination-repair protein [Vibrio campbellii]
 gi|146432076|gb|ABQ41020.1| recombination-repair protein [Vibrio campbellii]
 gi|146432078|gb|ABQ41021.1| recombination-repair protein [Vibrio campbellii]
 gi|146432080|gb|ABQ41022.1| recombination-repair protein [Vibrio campbellii]
 gi|146432082|gb|ABQ41023.1| recombination-repair protein [Vibrio campbellii]
 gi|146432084|gb|ABQ41024.1| recombination-repair protein [Vibrio campbellii]
 gi|146432086|gb|ABQ41025.1| recombination-repair protein [Vibrio campbellii]
 gi|146432088|gb|ABQ41026.1| recombination-repair protein [Vibrio campbellii]
 gi|146432090|gb|ABQ41027.1| recombination-repair protein [Vibrio campbellii]
 gi|146432092|gb|ABQ41028.1| recombination-repair protein [Vibrio campbellii]
 gi|146432094|gb|ABQ41029.1| recombination-repair protein [Vibrio campbellii]
 gi|146432096|gb|ABQ41030.1| recombination-repair protein [Vibrio campbellii]
 gi|146432098|gb|ABQ41031.1| recombination-repair protein [Vibrio campbellii]
 gi|146432100|gb|ABQ41032.1| recombination-repair protein [Vibrio campbellii]
 gi|146432102|gb|ABQ41033.1| recombination-repair protein [Vibrio campbellii]
 gi|146432104|gb|ABQ41034.1| recombination-repair protein [Vibrio campbellii]
 gi|146432106|gb|ABQ41035.1| recombination-repair protein [Vibrio campbellii]
 gi|146432108|gb|ABQ41036.1| recombination-repair protein [Vibrio campbellii]
 gi|146432110|gb|ABQ41037.1| recombination-repair protein [Vibrio campbellii]
 gi|146432112|gb|ABQ41038.1| recombination-repair protein [Vibrio campbellii]
 gi|146432114|gb|ABQ41039.1| recombination-repair protein [Vibrio campbellii]
 gi|146432120|gb|ABQ41042.1| recombination-repair protein [Vibrio campbellii]
 gi|146432122|gb|ABQ41043.1| recombination-repair protein [Vibrio campbellii]
 gi|146432124|gb|ABQ41044.1| recombination-repair protein [Vibrio campbellii]
 gi|146432126|gb|ABQ41045.1| recombination-repair protein [Vibrio campbellii]
 gi|146432229|gb|ABQ41096.1| recombination-repair protein [Vibrio rotiferianus]
 gi|146432231|gb|ABQ41097.1| recombination-repair protein [Vibrio rotiferianus]
 gi|146432233|gb|ABQ41098.1| recombination-repair protein [Vibrio rotiferianus]
 gi|305633009|dbj|BAJ16212.1| recombination-repair protein [Vibrio sp. TCFB 0772]
 gi|308522656|dbj|BAJ22939.1| DNA recombination protein [Vibrio sagamiensis]
 gi|308522658|dbj|BAJ22940.1| DNA recombination protein [Vibrio sagamiensis]
          Length = 165

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 118/165 (71%), Positives = 149/165 (90%)

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALT
Sbjct: 1   AFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALT 60

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           P+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTT
Sbjct: 61  PKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTT 120

Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           GGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PF
Sbjct: 121 GGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPF 165


>gi|91981426|gb|ABE68055.1| recombinase [Pseudomonas sp. P12]
          Length = 155

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 112/152 (73%), Positives = 130/152 (85%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + I  +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L  IAQ+QK G TCAFV
Sbjct: 4   RQAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAQAQKAGATCAFV 63

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           DAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DSVAAL P+A
Sbjct: 64  DAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKA 123

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           EIEG+MG+   G+QARLMSQALRK+T +I  +
Sbjct: 124 EIEGEMGDMHVGLQARLMSQALRKITGNIKNA 155


>gi|167554608|dbj|BAG07003.1| recombinaseA [Fructobacillus fructosus]
          Length = 164

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 111/164 (67%), Positives = 138/164 (84%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LDIALG+GG+PKGRIVE+YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  Y
Sbjct: 1   SVKLDIALGVGGYPKGRIVEVYGPESSGKTTIALHAVAEIQKAGGTAAYIDAENALDVKY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A  LGV    LL+SQPDTGEQ LEI D LV+SGAVD++V+DSVAAL PR EIEG+MG++ 
Sbjct: 61  AEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDMVVVDSVAALVPRVEIEGEMGDAH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            G+QARLMSQALRKL  +++R+  I +FINQ+R K+GVMFG+PE
Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPE 164


>gi|37956350|gb|AAP15353.1| RecA [Desulfuromusa succinoxidans]
          Length = 173

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 123/170 (72%), Positives = 146/170 (85%)

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GG  AF+DAEHALD  YA+ LGV   +LL+SQPDTGEQALEIT+MLVRSGA+D++V+
Sbjct: 4   QKQGGVAAFMDAEHALDIQYAQHLGVKADDLLVSQPDTGEQALEITEMLVRSGAIDLLVV 63

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAALTPRAEIEG+MG+S  G+QARLMSQALRKLT  +S+S C ++FINQ+RMKIGVMF
Sbjct: 64  DSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKLTGIVSKSNCTIIFINQIRMKIGVMF 123

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           G+PETTTGGNALKFY SVRLDIRR+ S+K    + G +TRVKVVKNK+A 
Sbjct: 124 GNPETTTGGNALKFYCSVRLDIRRIASLKQGQDVVGGRTRVKVVKNKVAP 173


>gi|310892469|gb|ADP37379.1| recombinase protein A [Rhizobium sp. CCNWMQ14-2]
 gi|310892471|gb|ADP37380.1| recombinase protein A [Rhizobium sp. CCNWQTX14]
 gi|310892473|gb|ADP37381.1| recombinase protein A [Rhizobium sp. CCNWQTX3]
          Length = 147

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 116/146 (79%), Positives = 129/146 (88%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
           S       IE + +GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG
Sbjct: 2   SAAGSIVEIETIPTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGG 61

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
            CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAA
Sbjct: 62  ICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAA 121

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQA 182
           LTPRAEIEG+MG+SLPG+QARLMSQ 
Sbjct: 122 LTPRAEIEGEMGDSLPGLQARLMSQR 147


>gi|5002561|emb|CAB44341.1| RecA protein [Geodermatophilus obscurus]
          Length = 169

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 117/169 (69%), Positives = 142/169 (84%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ALH IA +Q  GG CAF+DAEHALD  YARKLGVD  +LL+SQPD GEQALEI D LV
Sbjct: 1   TVALHAIANAQAEGGICAFIDAEHALDPEYARKLGVDTDSLLVSQPDNGEQALEIADTLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+++IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +++ +    +FIN
Sbjct: 61  RSGALELIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGALNAAGTTAIFIN 120

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           Q+R KIGVMFGSPETTTGG ALKFYSSVRLD+RRV ++KD   + GN+T
Sbjct: 121 QLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRVETLKDGSEMVGNRT 169


>gi|57116488|gb|AAW33735.1| recombinase A [Serratia symbiotica str. Tucson]
          Length = 170

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 117/170 (68%), Positives = 146/170 (85%)

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI 
Sbjct: 1   SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEIC 60

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           D L RSGA+D+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  +  +L
Sbjct: 61  DALTRSGAIDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLL 120

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D + G
Sbjct: 121 IFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDEVVG 170


>gi|146432116|gb|ABQ41040.1| recombination-repair protein [Vibrio campbellii]
 gi|146432118|gb|ABQ41041.1| recombination-repair protein [Vibrio campbellii]
          Length = 165

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 118/165 (71%), Positives = 148/165 (89%)

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AF+DAEHALD +YA KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALT
Sbjct: 1   AFIDAEHALDPVYAMKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALT 60

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           P+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTT
Sbjct: 61  PKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTT 120

Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           GGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PF
Sbjct: 121 GGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPF 165


>gi|37956368|gb|AAP15359.1| RecA [Pelobacter venetianus]
          Length = 178

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 120/169 (71%), Positives = 148/169 (87%)

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG  AFVDAEHALD  YARKLGV   +LL+SQPDTGEQALEIT++LVRSGA+D++V+D
Sbjct: 3   KKGGIAAFVDAEHALDIHYARKLGVRTDDLLVSQPDTGEQALEITEVLVRSGAIDVLVVD 62

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL PRAEIEG+MG++  G+QARLMSQALRKLT +IS+S C ++FINQ+RMKIGVMFG
Sbjct: 63  SVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTGTISKSNCCVIFINQIRMKIGVMFG 122

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           +PETT+GGNALKFY+SVR+DIR++ ++K    + GN+TRVKVVKNK+A 
Sbjct: 123 NPETTSGGNALKFYASVRMDIRKIATLKQGQDVIGNRTRVKVVKNKVAP 171


>gi|38602339|emb|CAD58025.1| recombinase A [Acetobacter pasteurianus]
          Length = 152

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 117/152 (76%), Positives = 140/152 (92%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGA+D++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT +++RS  +++F+
Sbjct: 1   VRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGTVARSNTLMIFL 60

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+R+KIGVMFG+PETTTGGNALKFYSSVR+DIRR+GSIKDKD +TGNQTRVKVVKNKMA
Sbjct: 61  NQIRLKIGVMFGNPETTTGGNALKFYSSVRMDIRRIGSIKDKDEVTGNQTRVKVVKNKMA 120

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
            PF+QVEFDIMYGEGI+  GELIDLGVKA +V
Sbjct: 121 PPFRQVEFDIMYGEGITKVGELIDLGVKAGVV 152


>gi|213012382|gb|ACJ38757.1| recombination-repair protein [Vibrio sp. R-123]
          Length = 169

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 118/169 (69%), Positives = 149/169 (88%)

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE
Sbjct: 1   HALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIE 60

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK
Sbjct: 61  GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 120

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           FY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IMYG
Sbjct: 121 FYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYG 169


>gi|167554616|dbj|BAG07007.1| recombinaseA [Fructobacillus durionis]
          Length = 164

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 110/164 (67%), Positives = 138/164 (84%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG+PKGRIVE+YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  Y
Sbjct: 1   SVKLDVALGVGGYPKGRIVEVYGPESSGKTTIALHAVAEIQKAGGTAAYIDAENALDVKY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A  LGV    LL+SQPDTGEQ LEI D LV+SGAVD++V+DSVAAL PR EIEG+MG++ 
Sbjct: 61  AEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDMVVVDSVAALVPRVEIEGEMGDAH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            G+QARLMSQALRKL  +++R+  I +FINQ+R K+GVMFG+PE
Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPE 164


>gi|325305324|gb|ADZ06010.1| RecA [Aeromonas veronii bv. sobria]
 gi|325305326|gb|ADZ06011.1| RecA [Aeromonas veronii bv. sobria]
 gi|325305332|gb|ADZ06014.1| RecA [Aeromonas veronii bv. sobria]
 gi|325305334|gb|ADZ06015.1| RecA [Aeromonas veronii bv. veronii]
 gi|325305340|gb|ADZ06018.1| RecA [Aeromonas veronii bv. sobria]
 gi|325305342|gb|ADZ06019.1| RecA [Aeromonas veronii bv. sobria]
 gi|325305344|gb|ADZ06020.1| RecA [Aeromonas veronii bv. sobria]
 gi|325305346|gb|ADZ06021.1| RecA [Aeromonas veronii bv. sobria]
 gi|325305348|gb|ADZ06022.1| RecA [Aeromonas veronii bv. sobria]
 gi|325305350|gb|ADZ06023.1| RecA [Aeromonas veronii bv. sobria]
 gi|325305352|gb|ADZ06024.1| RecA [Aeromonas veronii bv. sobria]
 gi|325305354|gb|ADZ06025.1| RecA [Aeromonas veronii bv. veronii]
 gi|325305356|gb|ADZ06026.1| RecA [Aeromonas veronii bv. veronii]
          Length = 162

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 124/162 (76%), Positives = 146/162 (90%)

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DS
Sbjct: 1   KGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDS 60

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           VAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGS
Sbjct: 61  VAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGS 120

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           PETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+TRVKVV
Sbjct: 121 PETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNETRVKVV 162


>gi|213012370|gb|ACJ38751.1| recombination-repair protein [Vibrio sp. R-86]
          Length = 169

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 118/169 (69%), Positives = 149/169 (88%)

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEI
Sbjct: 1   EHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEI 60

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 61  EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNAL 120

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           KFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+    IMY
Sbjct: 121 KFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMY 169


>gi|310892475|gb|ADP37382.1| recombinase protein A [Rhizobium sp. CCNWQTX14-2]
          Length = 147

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 116/145 (80%), Positives = 129/145 (88%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
           S       IE + +GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG
Sbjct: 2   SAAGSIVEIETIPTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGG 61

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
            CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAA
Sbjct: 62  ICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAA 121

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQ 181
           LTPRAEIEG+MG+SLPG+QARLMSQ
Sbjct: 122 LTPRAEIEGEMGDSLPGLQARLMSQ 146


>gi|167554618|dbj|BAG07008.1| recombinaseA [Fructobacillus pseudoficulneus]
          Length = 164

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 109/164 (66%), Positives = 138/164 (84%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG+PKGRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  Y
Sbjct: 1   SVKLDVALGVGGYPKGRIIEVYGPESSGKTTIALHAVAEIQKNGGTAAYIDAENALDVKY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A  LGV    LL+SQPDTGEQ LEI D LV+SGAVD++V+DSVAAL PR EIEG+MG++ 
Sbjct: 61  AEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDMVVVDSVAALVPRVEIEGEMGDAH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            G+QARLMSQALRKL  +++R+  I +FINQ+R K+GVMFG+PE
Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPE 164


>gi|325305322|gb|ADZ06009.1| RecA [Aeromonas veronii bv. sobria]
          Length = 161

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 124/161 (77%), Positives = 146/161 (90%)

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSV
Sbjct: 1   GKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSV 60

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSP
Sbjct: 61  AALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSP 120

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           ETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+TRVKVV
Sbjct: 121 ETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNETRVKVV 161


>gi|161346345|gb|ABX64979.1| recombinase A [Haemophilus influenzae]
 gi|161346445|gb|ABX65029.1| recombinase A [Haemophilus influenzae]
          Length = 149

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 111/149 (74%), Positives = 128/149 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSLGLD+ALGIGG P GRIVEI+GPESSGKTTL L  IAQ+QK G TCAF+DAE
Sbjct: 1   VESISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGVD+K L +SQPD GEQALEI D LVRSGA+D+I++DSVAALTP+AEIE
Sbjct: 61  HALDPIYATKLGVDVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193
           GDMG+S  G+QARLMSQALRKLT  I  +
Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTGQIKNA 149


>gi|9908865|emb|CAC04273.1| RecA protein [Azorhizobium caulinodans]
          Length = 147

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 115/147 (78%), Positives = 133/147 (90%), Gaps = 1/147 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG +  + E +E +SSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHTIA++QK 
Sbjct: 1   LGQKRQVME-VETISSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTIAEAQKK 59

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GGTCAF+DAEHALD IYARKLGV+L +LLISQPD GEQALEI D LVRSGA+D++V+DSV
Sbjct: 60  GGTCAFIDAEHALDPIYARKLGVNLDDLLISQPDAGEQALEIADTLVRSGAIDVLVVDSV 119

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQ 181
           AALTPRAE++G+MG++ PGMQARLMSQ
Sbjct: 120 AALTPRAELDGEMGDNQPGMQARLMSQ 146


>gi|172088021|dbj|BAG16817.1| recombinaseA [Weissella paramesenteroides]
          Length = 164

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 107/164 (65%), Positives = 140/164 (85%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SL LD+ALGIGG+PKGR++EIYGPESSGKTTLALH +A++QK GG  A++DAE+A+D  Y
Sbjct: 1   SLKLDVALGIGGYPKGRVIEIYGPESSGKTTLALHAVAEAQKNGGIVAYIDAENAMDVEY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A+ LGVD+  LL+SQPDTGEQ L I D L+ SGA+D++VIDSVAALTP+AEI+G++G+S 
Sbjct: 61  AKALGVDVDELLLSQPDTGEQGLAIADALIASGAIDMVVIDSVAALTPKAEIDGEIGDSS 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            G+QAR+MSQALRK++ +I ++    +FINQ+R KIGVMFG+PE
Sbjct: 121 VGLQARMMSQALRKMSGAILKTGTTAIFINQLREKIGVMFGNPE 164


>gi|161346551|gb|ABX65082.1| recombinase A [Haemophilus haemolyticus]
          Length = 149

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 112/149 (75%), Positives = 128/149 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSLGLDIALGIGG P GRIVEI+GPESSGKTTL L  IAQ+QK G TCAF+DAE
Sbjct: 1   VESISTGSLGLDIALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGVD+K L +SQPD GEQALEI D LVRSGA+D+I++DSVAALTP+AEIE
Sbjct: 61  HALDPIYAAKLGVDVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193
           GDMG+S  G+QARLMSQALRKLT  I  +
Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTGQIKNA 149


>gi|213517248|gb|ACJ50062.1| recombinase A [Pantoea agglomerans]
          Length = 160

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 115/160 (71%), Positives = 138/160 (86%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ N
Sbjct: 1   GGLPMGRIVEIYGPESSGKTTLTLQVIASAQRKGKTCAFIDAEHALDPVYAKKLGVDIDN 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQ
Sbjct: 61  LLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
           A+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGN
Sbjct: 121 AMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGN 160


>gi|296044720|gb|ADG85769.1| RecA [Vibrio sp. WH134]
          Length = 167

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 119/164 (72%), Positives = 145/164 (88%)

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK G TCAF+DAEHALD IYA KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+
Sbjct: 4   QKVGKTCAFIDAEHALDPIYAAKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVV 63

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMF
Sbjct: 64  DSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMF 123

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           G+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVV
Sbjct: 124 GNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVV 167


>gi|325650756|emb|CBY89561.1| RecA protein [Rhizobium leguminosarum]
          Length = 153

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 117/153 (76%), Positives = 136/153 (88%), Gaps = 1/153 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM+ GS  ++ E IE +S+GS GLDIALG+GG P+GRI+EIYGPESSGK TLAL  I
Sbjct: 1   KGSIMKXGSNENVXE-IETISTGSXGLDIALGVGGLPRGRIIEIYGPESSGKXTLALQXI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++QK GG CAFVDAEHALD +YARKLGVD +NLLISQPDTGEQALEITD LVRSG VD+
Sbjct: 60  AEAQKKGGXCAFVDAEHALDPVYARKLGVDXQNLLISQPDTGEQALEITDTLVRSGXVDV 119

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           +V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQ
Sbjct: 120 LVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQ 152


>gi|255989395|gb|ACU51562.1| putative recombinase [Rhizobium leguminosarum bv. viciae]
          Length = 141

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 120/140 (85%), Positives = 134/140 (95%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +
Sbjct: 1   GSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPV 60

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+S
Sbjct: 61  YARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDS 120

Query: 171 LPGMQARLMSQALRKLTSSI 190
           LPG+QARLMSQALRKLT+SI
Sbjct: 121 LPGLQARLMSQALRKLTASI 140


>gi|40641468|emb|CAE51280.1| recombinase A [Haemophilus influenzae]
 gi|40641470|emb|CAE51281.1| recombinase A [Haemophilus aegyptius]
 gi|40641472|emb|CAE51282.1| recombinase A [Haemophilus haemolyticus]
 gi|40641474|emb|CAE51283.1| recombinase A [Haemophilus haemolyticus]
 gi|161346171|gb|ABX64892.1| recombinase A [Haemophilus influenzae]
 gi|161346173|gb|ABX64893.1| recombinase A [Haemophilus influenzae]
 gi|161346175|gb|ABX64894.1| recombinase A [Haemophilus influenzae 22.1-21]
 gi|161346177|gb|ABX64895.1| recombinase A [Haemophilus influenzae 22.1-24]
 gi|161346179|gb|ABX64896.1| recombinase A [Haemophilus haemolyticus]
 gi|161346181|gb|ABX64897.1| recombinase A [Haemophilus haemolyticus]
 gi|161346183|gb|ABX64898.1| recombinase A [Haemophilus influenzae]
 gi|161346185|gb|ABX64899.1| recombinase A [Haemophilus haemolyticus]
 gi|161346187|gb|ABX64900.1| recombinase A [Haemophilus influenzae]
 gi|161346189|gb|ABX64901.1| recombinase A [Haemophilus influenzae]
 gi|161346191|gb|ABX64902.1| recombinase A [Haemophilus influenzae]
 gi|161346193|gb|ABX64903.1| recombinase A [Haemophilus haemolyticus]
 gi|161346195|gb|ABX64904.1| recombinase A [Haemophilus haemolyticus]
 gi|161346197|gb|ABX64905.1| recombinase A [Haemophilus haemolyticus]
 gi|161346199|gb|ABX64906.1| recombinase A [Haemophilus haemolyticus]
 gi|161346201|gb|ABX64907.1| recombinase A [Haemophilus haemolyticus]
 gi|161346203|gb|ABX64908.1| recombinase A [Haemophilus influenzae]
 gi|161346205|gb|ABX64909.1| recombinase A [Haemophilus influenzae]
 gi|161346207|gb|ABX64910.1| recombinase A [Haemophilus influenzae]
 gi|161346209|gb|ABX64911.1| recombinase A [Haemophilus haemolyticus]
 gi|161346211|gb|ABX64912.1| recombinase A [Haemophilus haemolyticus]
 gi|161346213|gb|ABX64913.1| recombinase A [Haemophilus haemolyticus]
 gi|161346215|gb|ABX64914.1| recombinase A [Haemophilus influenzae]
 gi|161346217|gb|ABX64915.1| recombinase A [Haemophilus haemolyticus]
 gi|161346219|gb|ABX64916.1| recombinase A [Haemophilus influenzae]
 gi|161346221|gb|ABX64917.1| recombinase A [Haemophilus haemolyticus]
 gi|161346223|gb|ABX64918.1| recombinase A [Haemophilus influenzae]
 gi|161346225|gb|ABX64919.1| recombinase A [Haemophilus influenzae]
 gi|161346227|gb|ABX64920.1| recombinase A [Haemophilus haemolyticus]
 gi|161346229|gb|ABX64921.1| recombinase A [Haemophilus influenzae]
 gi|161346231|gb|ABX64922.1| recombinase A [Haemophilus influenzae]
 gi|161346233|gb|ABX64923.1| recombinase A [Haemophilus influenzae]
 gi|161346235|gb|ABX64924.1| recombinase A [Haemophilus influenzae]
 gi|161346237|gb|ABX64925.1| recombinase A [Haemophilus influenzae]
 gi|161346239|gb|ABX64926.1| recombinase A [Haemophilus influenzae]
 gi|161346241|gb|ABX64927.1| recombinase A [Haemophilus influenzae]
 gi|161346243|gb|ABX64928.1| recombinase A [Haemophilus haemolyticus]
 gi|161346245|gb|ABX64929.1| recombinase A [Haemophilus influenzae]
 gi|161346247|gb|ABX64930.1| recombinase A [Haemophilus influenzae]
 gi|161346249|gb|ABX64931.1| recombinase A [Haemophilus influenzae]
 gi|161346251|gb|ABX64932.1| recombinase A [Haemophilus haemolyticus]
 gi|161346253|gb|ABX64933.1| recombinase A [Haemophilus influenzae]
 gi|161346255|gb|ABX64934.1| recombinase A [Haemophilus haemolyticus]
 gi|161346257|gb|ABX64935.1| recombinase A [Haemophilus haemolyticus]
 gi|161346259|gb|ABX64936.1| recombinase A [Haemophilus haemolyticus]
 gi|161346261|gb|ABX64937.1| recombinase A [Haemophilus haemolyticus]
 gi|161346263|gb|ABX64938.1| recombinase A [Haemophilus haemolyticus]
 gi|161346265|gb|ABX64939.1| recombinase A [Haemophilus haemolyticus]
 gi|161346267|gb|ABX64940.1| recombinase A [Haemophilus haemolyticus]
 gi|161346269|gb|ABX64941.1| recombinase A [Haemophilus haemolyticus]
 gi|161346271|gb|ABX64942.1| recombinase A [Haemophilus haemolyticus]
 gi|161346273|gb|ABX64943.1| recombinase A [Haemophilus haemolyticus]
 gi|161346275|gb|ABX64944.1| recombinase A [Haemophilus haemolyticus]
 gi|161346277|gb|ABX64945.1| recombinase A [Haemophilus haemolyticus]
 gi|161346279|gb|ABX64946.1| recombinase A [Haemophilus haemolyticus]
 gi|161346281|gb|ABX64947.1| recombinase A [Haemophilus influenzae]
 gi|161346283|gb|ABX64948.1| recombinase A [Haemophilus haemolyticus]
 gi|161346285|gb|ABX64949.1| recombinase A [Haemophilus influenzae]
 gi|161346287|gb|ABX64950.1| recombinase A [Haemophilus haemolyticus]
 gi|161346289|gb|ABX64951.1| recombinase A [Haemophilus haemolyticus]
 gi|161346291|gb|ABX64952.1| recombinase A [Haemophilus haemolyticus]
 gi|161346293|gb|ABX64953.1| recombinase A [Haemophilus influenzae]
 gi|161346295|gb|ABX64954.1| recombinase A [Haemophilus influenzae]
 gi|161346297|gb|ABX64955.1| recombinase A [Haemophilus influenzae]
 gi|161346299|gb|ABX64956.1| recombinase A [Haemophilus haemolyticus]
 gi|161346301|gb|ABX64957.1| recombinase A [Haemophilus haemolyticus]
 gi|161346303|gb|ABX64958.1| recombinase A [Haemophilus influenzae]
 gi|161346305|gb|ABX64959.1| recombinase A [Haemophilus influenzae]
 gi|161346307|gb|ABX64960.1| recombinase A [Haemophilus influenzae]
 gi|161346309|gb|ABX64961.1| recombinase A [Haemophilus influenzae]
 gi|161346311|gb|ABX64962.1| recombinase A [Haemophilus haemolyticus]
 gi|161346313|gb|ABX64963.1| recombinase A [Haemophilus influenzae]
 gi|161346315|gb|ABX64964.1| recombinase A [Haemophilus haemolyticus]
 gi|161346317|gb|ABX64965.1| recombinase A [Haemophilus influenzae]
 gi|161346319|gb|ABX64966.1| recombinase A [Haemophilus haemolyticus]
 gi|161346321|gb|ABX64967.1| recombinase A [Haemophilus haemolyticus]
 gi|161346323|gb|ABX64968.1| recombinase A [Haemophilus haemolyticus]
 gi|161346325|gb|ABX64969.1| recombinase A [Haemophilus influenzae]
 gi|161346327|gb|ABX64970.1| recombinase A [Haemophilus haemolyticus]
 gi|161346329|gb|ABX64971.1| recombinase A [Haemophilus influenzae]
 gi|161346331|gb|ABX64972.1| recombinase A [Haemophilus influenzae]
 gi|161346333|gb|ABX64973.1| recombinase A [Haemophilus haemolyticus]
 gi|161346335|gb|ABX64974.1| recombinase A [Haemophilus haemolyticus]
 gi|161346337|gb|ABX64975.1| recombinase A [Haemophilus influenzae]
 gi|161346339|gb|ABX64976.1| recombinase A [Haemophilus haemolyticus]
 gi|161346341|gb|ABX64977.1| recombinase A [Haemophilus haemolyticus]
 gi|161346343|gb|ABX64978.1| recombinase A [Haemophilus influenzae]
 gi|161346347|gb|ABX64980.1| recombinase A [Haemophilus influenzae]
 gi|161346349|gb|ABX64981.1| recombinase A [Haemophilus influenzae]
 gi|161346351|gb|ABX64982.1| recombinase A [Haemophilus influenzae]
 gi|161346353|gb|ABX64983.1| recombinase A [Haemophilus influenzae]
 gi|161346355|gb|ABX64984.1| recombinase A [Haemophilus influenzae]
 gi|161346357|gb|ABX64985.1| recombinase A [Haemophilus influenzae]
 gi|161346359|gb|ABX64986.1| recombinase A [Haemophilus influenzae]
 gi|161346361|gb|ABX64987.1| recombinase A [Haemophilus influenzae]
 gi|161346363|gb|ABX64988.1| recombinase A [Haemophilus influenzae]
 gi|161346365|gb|ABX64989.1| recombinase A [Haemophilus influenzae]
 gi|161346367|gb|ABX64990.1| recombinase A [Haemophilus influenzae]
 gi|161346369|gb|ABX64991.1| recombinase A [Haemophilus influenzae]
 gi|161346371|gb|ABX64992.1| recombinase A [Haemophilus influenzae]
 gi|161346373|gb|ABX64993.1| recombinase A [Haemophilus influenzae]
 gi|161346375|gb|ABX64994.1| recombinase A [Haemophilus influenzae]
 gi|161346377|gb|ABX64995.1| recombinase A [Haemophilus haemolyticus]
 gi|161346381|gb|ABX64997.1| recombinase A [Haemophilus influenzae]
 gi|161346385|gb|ABX64999.1| recombinase A [Haemophilus influenzae]
 gi|161346387|gb|ABX65000.1| recombinase A [Haemophilus haemolyticus]
 gi|161346389|gb|ABX65001.1| recombinase A [Haemophilus haemolyticus]
 gi|161346391|gb|ABX65002.1| recombinase A [Haemophilus haemolyticus]
 gi|161346393|gb|ABX65003.1| recombinase A [Haemophilus haemolyticus]
 gi|161346395|gb|ABX65004.1| recombinase A [Haemophilus haemolyticus]
 gi|161346397|gb|ABX65005.1| recombinase A [Haemophilus haemolyticus]
 gi|161346399|gb|ABX65006.1| recombinase A [Haemophilus haemolyticus]
 gi|161346401|gb|ABX65007.1| recombinase A [Haemophilus haemolyticus]
 gi|161346403|gb|ABX65008.1| recombinase A [Haemophilus haemolyticus]
 gi|161346405|gb|ABX65009.1| recombinase A [Haemophilus haemolyticus]
 gi|161346407|gb|ABX65010.1| recombinase A [Haemophilus haemolyticus]
 gi|161346409|gb|ABX65011.1| recombinase A [Haemophilus influenzae]
 gi|161346411|gb|ABX65012.1| recombinase A [Haemophilus influenzae]
 gi|161346413|gb|ABX65013.1| recombinase A [Haemophilus influenzae]
 gi|161346415|gb|ABX65014.1| recombinase A [Haemophilus influenzae]
 gi|161346417|gb|ABX65015.1| recombinase A [Haemophilus influenzae]
 gi|161346419|gb|ABX65016.1| recombinase A [Haemophilus influenzae]
 gi|161346421|gb|ABX65017.1| recombinase A [Haemophilus influenzae]
 gi|161346423|gb|ABX65018.1| recombinase A [Haemophilus influenzae]
 gi|161346425|gb|ABX65019.1| recombinase A [Haemophilus influenzae]
 gi|161346427|gb|ABX65020.1| recombinase A [Haemophilus influenzae]
 gi|161346429|gb|ABX65021.1| recombinase A [Haemophilus influenzae]
 gi|161346431|gb|ABX65022.1| recombinase A [Haemophilus influenzae]
 gi|161346433|gb|ABX65023.1| recombinase A [Haemophilus influenzae]
 gi|161346435|gb|ABX65024.1| recombinase A [Haemophilus influenzae]
 gi|161346437|gb|ABX65025.1| recombinase A [Haemophilus influenzae]
 gi|161346439|gb|ABX65026.1| recombinase A [Haemophilus influenzae]
 gi|161346441|gb|ABX65027.1| recombinase A [Haemophilus influenzae]
 gi|161346443|gb|ABX65028.1| recombinase A [Haemophilus influenzae]
 gi|161346447|gb|ABX65030.1| recombinase A [Haemophilus influenzae]
 gi|161346449|gb|ABX65031.1| recombinase A [Haemophilus influenzae]
 gi|161346451|gb|ABX65032.1| recombinase A [Haemophilus influenzae]
 gi|161346453|gb|ABX65033.1| recombinase A [Haemophilus influenzae]
 gi|161346455|gb|ABX65034.1| recombinase A [Haemophilus influenzae]
 gi|161346457|gb|ABX65035.1| recombinase A [Haemophilus influenzae]
 gi|161346459|gb|ABX65036.1| recombinase A [Haemophilus influenzae]
 gi|161346461|gb|ABX65037.1| recombinase A [Haemophilus haemolyticus]
 gi|161346463|gb|ABX65038.1| recombinase A [Haemophilus haemolyticus]
 gi|161346465|gb|ABX65039.1| recombinase A [Haemophilus haemolyticus]
 gi|161346467|gb|ABX65040.1| recombinase A [Haemophilus haemolyticus]
 gi|161346469|gb|ABX65041.1| recombinase A [Haemophilus haemolyticus]
 gi|161346471|gb|ABX65042.1| recombinase A [Haemophilus haemolyticus]
 gi|161346473|gb|ABX65043.1| recombinase A [Haemophilus haemolyticus]
 gi|161346475|gb|ABX65044.1| recombinase A [Haemophilus influenzae]
 gi|161346477|gb|ABX65045.1| recombinase A [Haemophilus haemolyticus]
 gi|161346479|gb|ABX65046.1| recombinase A [Haemophilus haemolyticus]
 gi|161346481|gb|ABX65047.1| recombinase A [Haemophilus haemolyticus]
 gi|161346483|gb|ABX65048.1| recombinase A [Haemophilus haemolyticus]
 gi|161346485|gb|ABX65049.1| recombinase A [Haemophilus haemolyticus]
 gi|161346487|gb|ABX65050.1| recombinase A [Haemophilus haemolyticus]
 gi|161346489|gb|ABX65051.1| recombinase A [Haemophilus haemolyticus]
 gi|161346491|gb|ABX65052.1| recombinase A [Haemophilus haemolyticus]
 gi|161346493|gb|ABX65053.1| recombinase A [Haemophilus haemolyticus]
 gi|161346495|gb|ABX65054.1| recombinase A [Haemophilus haemolyticus]
 gi|161346497|gb|ABX65055.1| recombinase A [Haemophilus haemolyticus]
 gi|161346501|gb|ABX65057.1| recombinase A [Haemophilus haemolyticus]
 gi|161346503|gb|ABX65058.1| recombinase A [Haemophilus haemolyticus]
 gi|161346505|gb|ABX65059.1| recombinase A [Haemophilus haemolyticus]
 gi|161346507|gb|ABX65060.1| recombinase A [Haemophilus haemolyticus]
 gi|161346509|gb|ABX65061.1| recombinase A [Haemophilus haemolyticus]
 gi|161346511|gb|ABX65062.1| recombinase A [Haemophilus haemolyticus]
 gi|161346515|gb|ABX65064.1| recombinase A [Haemophilus haemolyticus]
 gi|161346517|gb|ABX65065.1| recombinase A [Haemophilus haemolyticus]
 gi|161346519|gb|ABX65066.1| recombinase A [Haemophilus haemolyticus]
 gi|161346521|gb|ABX65067.1| recombinase A [Haemophilus haemolyticus]
 gi|161346525|gb|ABX65069.1| recombinase A [Haemophilus haemolyticus]
 gi|161346527|gb|ABX65070.1| recombinase A [Haemophilus haemolyticus]
 gi|161346529|gb|ABX65071.1| recombinase A [Haemophilus haemolyticus]
 gi|161346531|gb|ABX65072.1| recombinase A [Haemophilus haemolyticus]
 gi|161346533|gb|ABX65073.1| recombinase A [Haemophilus haemolyticus]
 gi|161346535|gb|ABX65074.1| recombinase A [Haemophilus haemolyticus]
 gi|161346537|gb|ABX65075.1| recombinase A [Haemophilus haemolyticus]
 gi|161346539|gb|ABX65076.1| recombinase A [Haemophilus haemolyticus]
 gi|161346541|gb|ABX65077.1| recombinase A [Haemophilus haemolyticus]
 gi|161346543|gb|ABX65078.1| recombinase A [Haemophilus haemolyticus]
 gi|161346545|gb|ABX65079.1| recombinase A [Haemophilus haemolyticus]
 gi|161346549|gb|ABX65081.1| recombinase A [Haemophilus haemolyticus]
 gi|161346553|gb|ABX65083.1| recombinase A [Haemophilus haemolyticus]
 gi|161346555|gb|ABX65084.1| recombinase A [Haemophilus haemolyticus]
 gi|161346557|gb|ABX65085.1| recombinase A [Haemophilus haemolyticus]
 gi|161346559|gb|ABX65086.1| recombinase A [Haemophilus haemolyticus]
 gi|161346561|gb|ABX65087.1| recombinase A [Haemophilus haemolyticus]
 gi|161346563|gb|ABX65088.1| recombinase A [Haemophilus haemolyticus]
 gi|290746173|gb|ADD51751.1| recombinase A [Haemophilus influenzae]
 gi|290746175|gb|ADD51752.1| recombinase A [Haemophilus influenzae]
 gi|290746177|gb|ADD51753.1| recombinase A [Haemophilus influenzae]
 gi|290746179|gb|ADD51754.1| recombinase A [Haemophilus influenzae]
 gi|290746181|gb|ADD51755.1| recombinase A [Haemophilus influenzae]
 gi|290746183|gb|ADD51756.1| recombinase A [Haemophilus influenzae]
 gi|290746185|gb|ADD51757.1| recombinase A [Haemophilus influenzae]
 gi|290746187|gb|ADD51758.1| recombinase A [Haemophilus influenzae]
 gi|290746189|gb|ADD51759.1| recombinase A [Haemophilus influenzae]
 gi|290746191|gb|ADD51760.1| recombinase A [Haemophilus influenzae]
 gi|290746193|gb|ADD51761.1| recombinase A [Haemophilus influenzae]
 gi|290746195|gb|ADD51762.1| recombinase A [Haemophilus influenzae]
 gi|290746197|gb|ADD51763.1| recombinase A [Haemophilus influenzae]
 gi|290746199|gb|ADD51764.1| recombinase A [Haemophilus influenzae]
 gi|290746201|gb|ADD51765.1| recombinase A [Haemophilus influenzae]
 gi|290746203|gb|ADD51766.1| recombinase A [Haemophilus influenzae]
 gi|290746205|gb|ADD51767.1| recombinase A [Haemophilus influenzae]
 gi|290746207|gb|ADD51768.1| recombinase A [Haemophilus influenzae]
          Length = 149

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 111/149 (74%), Positives = 128/149 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSLGLD+ALGIGG P GRIVEI+GPESSGKTTL L  IAQ+QK G TCAF+DAE
Sbjct: 1   VESISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGVD+K L +SQPD GEQALEI D LVRSGA+D+I++DSVAALTP+AEIE
Sbjct: 61  HALDPIYAAKLGVDVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193
           GDMG+S  G+QARLMSQALRKLT  I  +
Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTGQIKNA 149


>gi|167554596|dbj|BAG06997.1| recombinaseA [Fructobacillus ficulneus]
          Length = 164

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 111/164 (67%), Positives = 138/164 (84%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ LD+ALG+GG+PKGRIVE+YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  Y
Sbjct: 1   SVKLDVALGVGGYPKGRIVEVYGPESSGKTTIALHAVAEIQKNGGTAAYIDAENALDVKY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A  LGV    LL+SQPDTGEQ LEI D LV+SGAVD+IV+DSVAAL PR EIEG+MG++ 
Sbjct: 61  AEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDMIVVDSVAALVPRVEIEGEMGDAH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            G+QARLMSQALRKL  +++R+  I +FINQ+R K+GVMFG+PE
Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPE 164


>gi|5002559|emb|CAB44340.1| RecA protein [Frankia sp.]
          Length = 170

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 115/170 (67%), Positives = 138/170 (81%)

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
           H +A +Q  GG  AF+DAEHALD  YA KLGVD   LL+SQPDTGEQALEI DML+RSGA
Sbjct: 1   HAVANAQAAGGIAAFIDAEHALDPEYAGKLGVDTDALLVSQPDTGEQALEIADMLIRSGA 60

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +D+IVIDSVAAL PRAEIEG+MG+S  G+QA LMSQALRK+T +++ S    +FINQ+R 
Sbjct: 61  LDVIVIDSVAALVPRAEIEGEMGDSHVGLQATLMSQALRKITGALANSGTTAIFINQLRE 120

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           K+GVMFGSPETTTGG ALKFY+SVRLD+ R+ ++KD     GN+TRVKVV
Sbjct: 121 KVGVMFGSPETTTGGKALKFYASVRLDVCRIETLKDSTEAVGNRTRVKVV 170


>gi|213516924|gb|ACJ49900.1| recombinase A [Erwinia chrysanthemi]
 gi|213516926|gb|ACJ49901.1| recombinase A [Dickeya paradisiaca]
 gi|213516932|gb|ACJ49904.1| recombinase A [Erwinia chrysanthemi]
 gi|213516944|gb|ACJ49910.1| recombinase A [Dickeya zeae]
 gi|213516946|gb|ACJ49911.1| recombinase A [Dickeya zeae]
 gi|213516950|gb|ACJ49913.1| recombinase A [Erwinia chrysanthemi]
 gi|213516952|gb|ACJ49914.1| recombinase A [Erwinia chrysanthemi]
 gi|213516954|gb|ACJ49915.1| recombinase A [Erwinia chrysanthemi]
 gi|213516956|gb|ACJ49916.1| recombinase A [Dickeya paradisiaca]
 gi|213516958|gb|ACJ49917.1| recombinase A [Dickeya zeae]
 gi|213516960|gb|ACJ49918.1| recombinase A [Dickeya zeae]
 gi|213516962|gb|ACJ49919.1| recombinase A [Dickeya zeae]
 gi|213516966|gb|ACJ49921.1| recombinase A [Dickeya zeae]
 gi|213516968|gb|ACJ49922.1| recombinase A [Erwinia chrysanthemi]
 gi|213516970|gb|ACJ49923.1| recombinase A [Dickeya zeae]
 gi|213516974|gb|ACJ49925.1| recombinase A [Dickeya zeae]
 gi|213516980|gb|ACJ49928.1| recombinase A [Dickeya zeae]
 gi|213516984|gb|ACJ49930.1| recombinase A [Dickeya zeae]
 gi|213517020|gb|ACJ49948.1| recombinase A [Dickeya zeae]
 gi|213517026|gb|ACJ49951.1| recombinase A [Erwinia chrysanthemi]
 gi|213517042|gb|ACJ49959.1| recombinase A [Dickeya sp. NCPPB 569]
 gi|213517046|gb|ACJ49961.1| recombinase A [Erwinia chrysanthemi]
 gi|213517050|gb|ACJ49963.1| recombinase A [Dickeya zeae]
 gi|213517052|gb|ACJ49964.1| recombinase A [Dickeya zeae]
 gi|213517056|gb|ACJ49966.1| recombinase A [Dickeya zeae]
 gi|213517062|gb|ACJ49969.1| recombinase A [Erwinia chrysanthemi]
 gi|213517064|gb|ACJ49970.1| recombinase A [Erwinia chrysanthemi]
 gi|213517070|gb|ACJ49973.1| recombinase A [Dickeya zeae]
 gi|213517072|gb|ACJ49974.1| recombinase A [Dickeya zeae]
 gi|213517074|gb|ACJ49975.1| recombinase A [Dickeya zeae]
 gi|213517078|gb|ACJ49977.1| recombinase A [Dickeya zeae]
 gi|213517084|gb|ACJ49980.1| recombinase A [Dickeya zeae]
 gi|213517090|gb|ACJ49983.1| recombinase A [Dickeya zeae]
 gi|213517110|gb|ACJ49993.1| recombinase A [Erwinia chrysanthemi]
 gi|213517114|gb|ACJ49995.1| recombinase A [Dickeya zeae]
 gi|213517120|gb|ACJ49998.1| recombinase A [Dickeya zeae]
 gi|213517150|gb|ACJ50013.1| recombinase A [Erwinia chrysanthemi]
 gi|213517158|gb|ACJ50017.1| recombinase A [Dickeya zeae]
 gi|213517160|gb|ACJ50018.1| recombinase A [Dickeya zeae]
 gi|213517162|gb|ACJ50019.1| recombinase A [Erwinia chrysanthemi]
 gi|213517164|gb|ACJ50020.1| recombinase A [Dickeya zeae]
 gi|213517168|gb|ACJ50022.1| recombinase A [Dickeya zeae]
 gi|213517170|gb|ACJ50023.1| recombinase A [Dickeya zeae]
 gi|213517172|gb|ACJ50024.1| recombinase A [Dickeya zeae]
 gi|213517174|gb|ACJ50025.1| recombinase A [Dickeya zeae]
 gi|213517182|gb|ACJ50029.1| recombinase A [Dickeya zeae]
 gi|213517188|gb|ACJ50032.1| recombinase A [Dickeya zeae]
 gi|213517192|gb|ACJ50034.1| recombinase A [Erwinia chrysanthemi]
 gi|213517206|gb|ACJ50041.1| recombinase A [Dickeya zeae]
 gi|213517210|gb|ACJ50043.1| recombinase A [Dickeya zeae]
 gi|213517212|gb|ACJ50044.1| recombinase A [Dickeya zeae]
 gi|213517220|gb|ACJ50048.1| recombinase A [Erwinia chrysanthemi]
 gi|213517222|gb|ACJ50049.1| recombinase A [Dickeya zeae]
 gi|213517226|gb|ACJ50051.1| recombinase A [Dickeya zeae]
 gi|213517228|gb|ACJ50052.1| recombinase A [Dickeya zeae]
 gi|213517230|gb|ACJ50053.1| recombinase A [Erwinia chrysanthemi]
 gi|213517246|gb|ACJ50061.1| recombinase A [Dickeya zeae]
 gi|213517262|gb|ACJ50069.1| recombinase A [Erwinia chrysanthemi]
 gi|213517266|gb|ACJ50071.1| recombinase A [Dickeya zeae]
 gi|213517270|gb|ACJ50073.1| recombinase A [Dickeya zeae]
 gi|318065343|gb|ADV36767.1| recombinase A [Dickeya zeae]
 gi|318065345|gb|ADV36768.1| recombinase A [Dickeya zeae]
          Length = 160

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 116/160 (72%), Positives = 138/160 (86%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ N
Sbjct: 1   GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDN 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQ
Sbjct: 61  LLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
           A+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGN
Sbjct: 121 AMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGN 160


>gi|37362719|gb|AAQ91336.1| RecA [Escherichia coli]
 gi|39754614|gb|AAR30798.1| RecA protein [Escherichia coli]
 gi|39754616|gb|AAR30799.1| RecA protein [Escherichia coli]
 gi|39754618|gb|AAR30800.1| RecA protein [Escherichia coli]
 gi|39754620|gb|AAR30801.1| RecA protein [Escherichia coli]
 gi|39754622|gb|AAR30802.1| RecA protein [Escherichia coli]
 gi|39754624|gb|AAR30803.1| RecA protein [Escherichia coli]
 gi|39754626|gb|AAR30804.1| RecA protein [Escherichia coli]
 gi|39754628|gb|AAR30805.1| RecA protein [Escherichia coli]
 gi|39754630|gb|AAR30806.1| RecA protein [Escherichia coli]
 gi|39754632|gb|AAR30807.1| RecA protein [Escherichia coli]
 gi|39754634|gb|AAR30808.1| RecA protein [Escherichia coli]
 gi|39754636|gb|AAR30809.1| RecA protein [Escherichia coli]
 gi|39754638|gb|AAR30810.1| RecA protein [Escherichia coli]
 gi|39754640|gb|AAR30811.1| RecA protein [Escherichia coli]
 gi|39754642|gb|AAR30812.1| RecA protein [Escherichia coli]
 gi|39754644|gb|AAR30813.1| RecA protein [Escherichia coli]
 gi|39754646|gb|AAR30814.1| RecA protein [Escherichia coli]
 gi|39754648|gb|AAR30815.1| RecA protein [Escherichia coli]
 gi|39754650|gb|AAR30816.1| RecA protein [Escherichia coli]
 gi|39754652|gb|AAR30817.1| RecA protein [Escherichia coli]
 gi|39754654|gb|AAR30818.1| RecA protein [Escherichia coli]
 gi|39754656|gb|AAR30819.1| RecA protein [Escherichia coli]
 gi|39754658|gb|AAR30820.1| RecA protein [Escherichia coli]
 gi|39754660|gb|AAR30821.1| RecA protein [Escherichia coli]
 gi|39754662|gb|AAR30822.1| RecA protein [Escherichia coli]
 gi|39754664|gb|AAR30823.1| RecA protein [Escherichia coli]
 gi|39754666|gb|AAR30824.1| RecA protein [Escherichia coli]
 gi|39754668|gb|AAR30825.1| RecA protein [Escherichia coli]
 gi|39754670|gb|AAR30826.1| RecA protein [Escherichia coli NU14]
 gi|39754672|gb|AAR30827.1| RecA protein [Escherichia coli]
 gi|39754674|gb|AAR30828.1| RecA protein [Escherichia coli]
 gi|39754676|gb|AAR30829.1| RecA protein [Escherichia coli]
 gi|39754678|gb|AAR30830.1| RecA protein [Escherichia coli UMN026]
 gi|39754680|gb|AAR30831.1| RecA protein [Escherichia coli]
 gi|39754682|gb|AAR30832.1| RecA protein [Escherichia coli]
 gi|51101217|gb|AAT95411.1| RecA [Escherichia fergusonii ATCC 35469]
 gi|86449959|gb|ABC96173.1| RecA protein [Escherichia coli]
 gi|86449961|gb|ABC96174.1| RecA protein [Escherichia coli]
 gi|86449963|gb|ABC96175.1| RecA protein [Escherichia coli]
 gi|86449965|gb|ABC96176.1| RecA protein [Escherichia coli]
 gi|86449967|gb|ABC96177.1| RecA protein [Escherichia coli]
 gi|294856523|gb|ADF45199.1| DNA strand exchange and recombination protein [Escherichia sp.
           B827]
 gi|294856525|gb|ADF45200.1| DNA strand exchange and recombination protein [Escherichia sp.
           E1492]
 gi|294856527|gb|ADF45201.1| DNA strand exchange and recombination protein [Escherichia sp.
           E807]
 gi|294856529|gb|ADF45202.1| DNA strand exchange and recombination protein [Escherichia sp.
           H442]
 gi|294856531|gb|ADF45203.1| DNA strand exchange and recombination protein [Escherichia sp.
           M863]
 gi|294856533|gb|ADF45204.1| DNA strand exchange and recombination protein [Escherichia sp.
           TW10509]
 gi|294856535|gb|ADF45205.1| DNA strand exchange and recombination protein [Escherichia sp.
           TW11930]
 gi|294856537|gb|ADF45206.1| DNA strand exchange and recombination protein [Escherichia sp.
           TW11966]
 gi|294856539|gb|ADF45207.1| DNA strand exchange and recombination protein [Escherichia sp.
           B1147]
 gi|294856541|gb|ADF45208.1| DNA strand exchange and recombination protein [Escherichia sp.
           TW09231]
 gi|294856543|gb|ADF45209.1| DNA strand exchange and recombination protein [Escherichia sp.
           TW09276]
 gi|294856545|gb|ADF45210.1| DNA strand exchange and recombination protein [Escherichia sp.
           TW09254]
 gi|294856547|gb|ADF45211.1| DNA strand exchange and recombination protein [Escherichia sp.
           TW09266]
 gi|294856549|gb|ADF45212.1| DNA strand exchange and recombination protein [Escherichia sp.
           TA04]
 gi|294856551|gb|ADF45213.1| DNA strand exchange and recombination protein [Escherichia sp.
           B685]
 gi|294856553|gb|ADF45214.1| DNA strand exchange and recombination protein [Escherichia sp.
           TW14182]
 gi|294856555|gb|ADF45215.1| DNA strand exchange and recombination protein [Escherichia albertii
           TW11588]
 gi|294856557|gb|ADF45216.1| DNA strand exchange and recombination protein [Escherichia sp.
           H605]
 gi|294856559|gb|ADF45217.1| DNA strand exchange and recombination protein [Escherichia sp. B49]
 gi|294856561|gb|ADF45218.1| DNA strand exchange and recombination protein [Escherichia sp.
           TW09308]
 gi|294856563|gb|ADF45219.1| DNA strand exchange and recombination protein [Escherichia sp.
           B1225]
 gi|294856565|gb|ADF45220.1| DNA strand exchange and recombination protein [Escherichia sp.
           B646]
 gi|294856567|gb|ADF45221.1| DNA strand exchange and recombination protein [Escherichia sp.
           E1118]
 gi|294856569|gb|ADF45222.1| DNA strand exchange and recombination protein [Escherichia sp.
           E1195]
 gi|294856571|gb|ADF45223.1| DNA strand exchange and recombination protein [Escherichia sp.
           E1196]
 gi|294856573|gb|ADF45224.1| DNA strand exchange and recombination protein [Escherichia sp.
           E471]
 gi|294856575|gb|ADF45225.1| DNA strand exchange and recombination protein [Escherichia sp.
           E472]
 gi|294856577|gb|ADF45226.1| DNA strand exchange and recombination protein [Escherichia sp.
           E620]
 gi|294856579|gb|ADF45227.1| DNA strand exchange and recombination protein [Escherichia sp.
           M1108]
 gi|294856581|gb|ADF45228.1| DNA strand exchange and recombination protein [Escherichia sp.
           TA290]
 gi|294856583|gb|ADF45229.1| DNA strand exchange and recombination protein [Escherichia sp.
           TW14263]
 gi|294856587|gb|ADF45231.1| DNA strand exchange and recombination protein [Escherichia sp.
           TW14265]
 gi|294856589|gb|ADF45232.1| DNA strand exchange and recombination protein [Escherichia sp.
           TW14266]
 gi|294856591|gb|ADF45233.1| DNA strand exchange and recombination protein [Escherichia sp.
           TW14267]
 gi|294856593|gb|ADF45234.1| DNA strand exchange and recombination protein [Escherichia sp.
           RL325/96]
 gi|294856595|gb|ADF45235.1| DNA strand exchange and recombination protein [Escherichia sp.
           Z205]
 gi|294856597|gb|ADF45236.1| DNA strand exchange and recombination protein [Escherichia
           albertii]
 gi|294856599|gb|ADF45237.1| DNA strand exchange and recombination protein [Escherichia
           albertii]
 gi|294856601|gb|ADF45238.1| DNA strand exchange and recombination protein [Escherichia
           albertii]
 gi|294856603|gb|ADF45239.1| DNA strand exchange and recombination protein [Escherichia
           albertii]
 gi|294856605|gb|ADF45240.1| DNA strand exchange and recombination protein [Escherichia
           albertii]
 gi|294856607|gb|ADF45241.1| DNA strand exchange and recombination protein [Escherichia
           albertii]
 gi|294856609|gb|ADF45242.1| DNA strand exchange and recombination protein [Escherichia
           albertii]
 gi|294856611|gb|ADF45243.1| DNA strand exchange and recombination protein [Escherichia coli]
 gi|294856613|gb|ADF45244.1| DNA strand exchange and recombination protein [Escherichia coli]
 gi|294856615|gb|ADF45245.1| DNA strand exchange and recombination protein [Escherichia
           fergusonii]
 gi|294856617|gb|ADF45246.1| DNA strand exchange and recombination protein [Escherichia
           fergusonii]
 gi|294856619|gb|ADF45247.1| DNA strand exchange and recombination protein [Escherichia
           fergusonii]
          Length = 169

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 119/168 (70%), Positives = 151/168 (89%)

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           RKLGVD+ NLL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  
Sbjct: 2   RKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHM 61

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD
Sbjct: 62  GLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 121

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           IRR+G++K+ +++ G++TRVKVVKNK+A+PFKQ EF I+YGEGI+F+G
Sbjct: 122 IRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYG 169


>gi|40641498|emb|CAE51295.1| recombinase A [Actinobacillus lignieresii]
 gi|40641500|emb|CAE51296.1| recombinase A [Actinobacillus pleuropneumoniae]
          Length = 149

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 115/149 (77%), Positives = 130/149 (87%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GS+GLD ALGIGG P GRIVEIYGPESSGKTTL L  IAQ+QK+G TCAF+DAE
Sbjct: 1   IEAVSTGSIGLDAALGIGGLPMGRIVEIYGPESSGKTTLTLSVIAQAQKSGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVD   LLISQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIE
Sbjct: 61  HALDPVYARKLGVDTDALLISQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193
           GDMG+S  G+QARLMSQALRKLT++I  +
Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTANIKAT 149


>gi|161346547|gb|ABX65080.1| recombinase A [Haemophilus haemolyticus]
          Length = 149

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 110/149 (73%), Positives = 127/149 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSLGLD+ALGIGG P GRIVEI+GPESSGKTTL L  IAQ+QK G TCAF+DAE
Sbjct: 1   VESISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLG D+K L +SQPD GEQALEI D LVRSGA+D+I++DSVAALTP+AEIE
Sbjct: 61  HALDPIYAAKLGADVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193
           GDMG+S  G+QARLMSQALRKLT  I  +
Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTGQIKNA 149


>gi|213517304|gb|ACJ50090.1| recombinase A [Erwinia amylovora]
          Length = 160

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 115/160 (71%), Positives = 137/160 (85%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ N
Sbjct: 1   GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDN 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQ
Sbjct: 61  LLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
           A+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETTTGGN
Sbjct: 121 AMRKLAGNLKNSGTLLIFINQIRMKIGVMFGNPETTTGGN 160


>gi|161346379|gb|ABX64996.1| recombinase A [Haemophilus influenzae]
          Length = 149

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 111/149 (74%), Positives = 129/149 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSLGLD+ALGIGG P GRIVEI+GPESSGKTTL L  IAQ+QK+G TCAF+DAE
Sbjct: 1   VESISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKSGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGVD+K L +SQPD GEQALEI D LVRSGA+D+I++DSVAALTP+AEIE
Sbjct: 61  HALDPIYAAKLGVDVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193
           GDMG+S  G+QARLMSQALRKLT  I  +
Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTGQIKNA 149


>gi|161346499|gb|ABX65056.1| recombinase A [Haemophilus haemolyticus]
 gi|161346513|gb|ABX65063.1| recombinase A [Haemophilus haemolyticus]
 gi|161346523|gb|ABX65068.1| recombinase A [Haemophilus haemolyticus]
          Length = 149

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 112/149 (75%), Positives = 128/149 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSLGLD+ALGIGG P GRIVEI+GPESSGKTTL L  IAQ+QK G TCAF+DAE
Sbjct: 1   VESISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGVD+K L ISQPD GEQALEI D LVRSGA+D+I++DSVAALTP+AEIE
Sbjct: 61  HALDPIYAAKLGVDVKELFISQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193
           GDMG+S  G+QARLMSQALRKLT  I  +
Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTGQIKNA 149


>gi|77557430|gb|ABB00009.1| recombination protein A [Bradyrhizobium sp. CCBAU 7128301]
 gi|77557432|gb|ABB00010.1| recombination protein A [Bradyrhizobium sp. CCBAU 71283012]
          Length = 146

 Score =  152 bits (384), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 108/142 (76%), Positives = 128/142 (90%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +SSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALH +A++QK GG CAF+DA
Sbjct: 5   DIETISSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHCVAEAQKKGGICAFIDA 64

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKL V++  LLISQPD GEQALEI D LVRSGA+D++++DSVAAL PRAE+
Sbjct: 65  EHALDPVYARKLAVNVDELLISQPDHGEQALEIADTLVRSGAIDVLIVDSVAALVPRAEL 124

Query: 164 EGDMGESLPGMQARLMSQALRK 185
           EG+MG++LPG+QARLMSQALRK
Sbjct: 125 EGEMGDALPGLQARLMSQALRK 146


>gi|161346383|gb|ABX64998.1| recombinase A [Haemophilus haemolyticus]
          Length = 149

 Score =  152 bits (384), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 111/149 (74%), Positives = 128/149 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSLGLD+ALGIGG P GRIVEI+GPESSGKTTL L  IAQ+QK G TCAF+DAE
Sbjct: 1   VESISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKEGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGVD+K L +SQPD GEQALEI D LVRSGA+D+I++DSVAALTP+AEIE
Sbjct: 61  HALDPIYAAKLGVDVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193
           GDMG+S  G+QARLMSQALRKLT  I  +
Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTGQIKNA 149


>gi|40641518|emb|CAE51305.1| recombinase A [Pasteurella multocida]
          Length = 149

 Score =  152 bits (384), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 111/149 (74%), Positives = 127/149 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VS+GSL LD+ALGIGG P GRIVEI+GPESSGKTTL L  IAQ+QK G TCAF+DAE
Sbjct: 1   VEAVSTGSLSLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKEGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGV++  LL+SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIE
Sbjct: 61  HALDPIYAAKLGVNVNELLVSQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193
           G+MG+S  G+QARLMSQALRKLT  I  S
Sbjct: 121 GEMGDSHMGLQARLMSQALRKLTGQIKNS 149


>gi|213516918|gb|ACJ49897.1| recombinase A [Dickeya dadantii]
 gi|213516920|gb|ACJ49898.1| recombinase A [Dickeya dieffenbachiae]
 gi|213516928|gb|ACJ49902.1| recombinase A [Dickeya dadantii]
 gi|213516930|gb|ACJ49903.1| recombinase A [Dickeya dianthicola]
 gi|213516934|gb|ACJ49905.1| recombinase A [Dickeya dianthicola]
 gi|213516938|gb|ACJ49907.1| recombinase A [Dickeya sp. 20714261]
 gi|213516942|gb|ACJ49909.1| recombinase A [Dickeya dianthicola]
 gi|213516948|gb|ACJ49912.1| recombinase A [Dickeya dianthicola]
 gi|213516964|gb|ACJ49920.1| recombinase A [Dickeya dadantii]
 gi|213516972|gb|ACJ49924.1| recombinase A [Dickeya dianthicola]
 gi|213516976|gb|ACJ49926.1| recombinase A [Dickeya dadantii]
 gi|213516978|gb|ACJ49927.1| recombinase A [Dickeya dieffenbachiae]
 gi|213516982|gb|ACJ49929.1| recombinase A [Dickeya sp. NCPPB 3274]
 gi|213516986|gb|ACJ49931.1| recombinase A [Dickeya dadantii]
 gi|213516988|gb|ACJ49932.1| recombinase A [Dickeya dieffenbachiae]
 gi|213516990|gb|ACJ49933.1| recombinase A [Dickeya dadantii]
 gi|213516992|gb|ACJ49934.1| recombinase A [Dickeya dadantii]
 gi|213516994|gb|ACJ49935.1| recombinase A [Dickeya dadantii]
 gi|213517000|gb|ACJ49938.1| recombinase A [Dickeya dianthicola]
 gi|213517022|gb|ACJ49949.1| recombinase A [Dickeya dadantii]
 gi|213517024|gb|ACJ49950.1| recombinase A [Dickeya dianthicola]
 gi|213517028|gb|ACJ49952.1| recombinase A [Dickeya dadantii]
 gi|213517030|gb|ACJ49953.1| recombinase A [Dickeya dadantii]
 gi|213517032|gb|ACJ49954.1| recombinase A [Dickeya sp. PD 813]
 gi|213517034|gb|ACJ49955.1| recombinase A [Dickeya dianthicola]
 gi|213517036|gb|ACJ49956.1| recombinase A [Dickeya dianthicola]
 gi|213517038|gb|ACJ49957.1| recombinase A [Dickeya dianthicola]
 gi|213517044|gb|ACJ49960.1| recombinase A [Dickeya dianthicola]
 gi|213517048|gb|ACJ49962.1| recombinase A [Dickeya dianthicola]
 gi|213517054|gb|ACJ49965.1| recombinase A [Dickeya dieffenbachiae]
 gi|213517058|gb|ACJ49967.1| recombinase A [Dickeya dianthicola]
 gi|213517060|gb|ACJ49968.1| recombinase A [Dickeya dieffenbachiae]
 gi|213517066|gb|ACJ49971.1| recombinase A [Dickeya dieffenbachiae]
 gi|213517068|gb|ACJ49972.1| recombinase A [Dickeya dianthicola]
 gi|213517076|gb|ACJ49976.1| recombinase A [Dickeya dadantii]
 gi|213517080|gb|ACJ49978.1| recombinase A [Dickeya dianthicola]
 gi|213517082|gb|ACJ49979.1| recombinase A [Dickeya sp. NCPPB 3211]
 gi|213517086|gb|ACJ49981.1| recombinase A [Dickeya dianthicola]
 gi|213517092|gb|ACJ49984.1| recombinase A [Dickeya dianthicola]
 gi|213517094|gb|ACJ49985.1| recombinase A [Dickeya dianthicola]
 gi|213517096|gb|ACJ49986.1| recombinase A [Dickeya dianthicola]
 gi|213517098|gb|ACJ49987.1| recombinase A [Dickeya dianthicola]
 gi|213517100|gb|ACJ49988.1| recombinase A [Dickeya dianthicola]
 gi|213517102|gb|ACJ49989.1| recombinase A [Dickeya dianthicola]
 gi|213517104|gb|ACJ49990.1| recombinase A [Dickeya dianthicola]
 gi|213517106|gb|ACJ49991.1| recombinase A [Dickeya dadantii]
 gi|213517112|gb|ACJ49994.1| recombinase A [Dickeya dianthicola]
 gi|213517116|gb|ACJ49996.1| recombinase A [Dickeya dianthicola]
 gi|213517118|gb|ACJ49997.1| recombinase A [Dickeya dianthicola]
 gi|213517122|gb|ACJ49999.1| recombinase A [Dickeya sp. PD 1750]
 gi|213517124|gb|ACJ50000.1| recombinase A [Dickeya dadantii]
 gi|213517126|gb|ACJ50001.1| recombinase A [Dickeya dadantii]
 gi|213517128|gb|ACJ50002.1| recombinase A [Dickeya dadantii]
 gi|213517130|gb|ACJ50003.1| recombinase A [Dickeya dianthicola]
 gi|213517132|gb|ACJ50004.1| recombinase A [Dickeya dianthicola]
 gi|213517142|gb|ACJ50009.1| recombinase A [Dickeya dianthicola]
 gi|213517144|gb|ACJ50010.1| recombinase A [Dickeya dianthicola]
 gi|213517146|gb|ACJ50011.1| recombinase A [Dickeya dianthicola]
 gi|213517148|gb|ACJ50012.1| recombinase A [Dickeya dianthicola]
 gi|213517152|gb|ACJ50014.1| recombinase A [Dickeya dianthicola]
 gi|213517154|gb|ACJ50015.1| recombinase A [Dickeya dianthicola]
 gi|213517156|gb|ACJ50016.1| recombinase A [Dickeya dianthicola]
 gi|213517176|gb|ACJ50026.1| recombinase A [Dickeya dianthicola]
 gi|213517178|gb|ACJ50027.1| recombinase A [Dickeya dianthicola]
 gi|213517180|gb|ACJ50028.1| recombinase A [Dickeya dadantii]
 gi|213517184|gb|ACJ50030.1| recombinase A [Dickeya sp. NCPPB 2915]
 gi|213517190|gb|ACJ50033.1| recombinase A [Dickeya dadantii]
 gi|213517194|gb|ACJ50035.1| recombinase A [Dickeya dianthicola]
 gi|213517196|gb|ACJ50036.1| recombinase A [Dickeya dianthicola]
 gi|213517198|gb|ACJ50037.1| recombinase A [Dickeya dianthicola]
 gi|213517200|gb|ACJ50038.1| recombinase A [Dickeya dieffenbachiae]
 gi|213517202|gb|ACJ50039.1| recombinase A [Dickeya dieffenbachiae]
 gi|213517204|gb|ACJ50040.1| recombinase A [Dickeya dieffenbachiae]
 gi|213517214|gb|ACJ50045.1| recombinase A [Dickeya dieffenbachiae]
 gi|213517216|gb|ACJ50046.1| recombinase A [Dickeya dieffenbachiae]
 gi|213517218|gb|ACJ50047.1| recombinase A [Dickeya dianthicola]
 gi|213517224|gb|ACJ50050.1| recombinase A [Dickeya dadantii]
 gi|213517232|gb|ACJ50054.1| recombinase A [Dickeya sp. NCPPB 2929]
 gi|213517234|gb|ACJ50055.1| recombinase A [Dickeya dadantii]
 gi|213517236|gb|ACJ50056.1| recombinase A [Dickeya dadantii]
 gi|213517238|gb|ACJ50057.1| recombinase A [Dickeya dadantii]
 gi|213517240|gb|ACJ50058.1| recombinase A [Dickeya dadantii]
 gi|213517242|gb|ACJ50059.1| recombinase A [Dickeya dianthicola]
 gi|213517244|gb|ACJ50060.1| recombinase A [Dickeya dadantii]
 gi|213517250|gb|ACJ50063.1| recombinase A [Dickeya dianthicola]
 gi|213517252|gb|ACJ50064.1| recombinase A [Dickeya dianthicola]
 gi|213517254|gb|ACJ50065.1| recombinase A [Dickeya dianthicola]
 gi|213517256|gb|ACJ50066.1| recombinase A [Dickeya dianthicola]
 gi|213517258|gb|ACJ50067.1| recombinase A [Dickeya dianthicola]
 gi|213517260|gb|ACJ50068.1| recombinase A [Dickeya dadantii]
 gi|213517264|gb|ACJ50070.1| recombinase A [Dickeya dianthicola]
 gi|213517268|gb|ACJ50072.1| recombinase A [Dickeya dianthicola]
 gi|213517272|gb|ACJ50074.1| recombinase A [Dickeya dianthicola]
 gi|213517274|gb|ACJ50075.1| recombinase A [Dickeya dianthicola]
 gi|213517276|gb|ACJ50076.1| recombinase A [Dickeya dianthicola]
 gi|213517278|gb|ACJ50077.1| recombinase A [Dickeya dianthicola]
 gi|213517280|gb|ACJ50078.1| recombinase A [Dickeya dianthicola]
 gi|213517282|gb|ACJ50079.1| recombinase A [Dickeya dianthicola]
 gi|213517284|gb|ACJ50080.1| recombinase A [Dickeya dieffenbachiae]
 gi|213517286|gb|ACJ50081.1| recombinase A [Dickeya dadantii]
 gi|213517288|gb|ACJ50082.1| recombinase A [Dickeya dadantii]
 gi|213517290|gb|ACJ50083.1| recombinase A [Dickeya dianthicola]
 gi|213517292|gb|ACJ50084.1| recombinase A [Dickeya dadantii]
 gi|213517294|gb|ACJ50085.1| recombinase A [Dickeya sp. NCPPB 3306]
 gi|213517296|gb|ACJ50086.1| recombinase A [Dickeya dianthicola]
 gi|213517298|gb|ACJ50087.1| recombinase A [Dickeya dianthicola]
 gi|213517300|gb|ACJ50088.1| recombinase A [Dickeya dadantii]
 gi|213517302|gb|ACJ50089.1| recombinase A [Dickeya dadantii]
          Length = 160

 Score =  152 bits (384), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 116/160 (72%), Positives = 138/160 (86%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ N
Sbjct: 1   GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRGGKTCAFIDAEHALDPIYAKKLGVDIDN 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQ
Sbjct: 61  LLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
           A+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGN
Sbjct: 121 AMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGN 160


>gi|213516936|gb|ACJ49906.1| recombinase A [Dickeya sp. 20711883]
 gi|213516940|gb|ACJ49908.1| recombinase A [Dickeya sp. G-121]
 gi|213516996|gb|ACJ49936.1| recombinase A [Dickeya sp. 20710970]
 gi|213516998|gb|ACJ49937.1| recombinase A [Dickeya sp. Ech1991]
 gi|213517002|gb|ACJ49939.1| recombinase A [Dickeya sp. G-115]
 gi|213517004|gb|ACJ49940.1| recombinase A [Dickeya sp. G-118]
 gi|213517006|gb|ACJ49941.1| recombinase A [Dickeya sp. G-120]
 gi|213517008|gb|ACJ49942.1| recombinase A [Dickeya sp. G-122]
 gi|213517010|gb|ACJ49943.1| recombinase A [Dickeya sp. G-169]
 gi|213517012|gb|ACJ49944.1| recombinase A [Dickeya sp. G-87]
 gi|213517014|gb|ACJ49945.1| recombinase A [Dickeya sp. Imp1]
 gi|213517016|gb|ACJ49946.1| recombinase A [Dickeya sp. Imp23.1]
 gi|213517018|gb|ACJ49947.1| recombinase A [Dickeya sp. Imp24]
 gi|213517134|gb|ACJ50005.1| recombinase A [Dickeya sp. Pc26.4]
 gi|213517136|gb|ACJ50006.1| recombinase A [Dickeya sp. Pc3]
 gi|213517138|gb|ACJ50007.1| recombinase A [Dickeya sp. Pc36.1]
 gi|213517140|gb|ACJ50008.1| recombinase A [Dickeya sp. Pc41.1]
          Length = 160

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 115/160 (71%), Positives = 138/160 (86%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ N
Sbjct: 1   GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRGGKTCAFIDAEHALDPVYAKKLGVDIDN 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQ
Sbjct: 61  LLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
           A+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGN
Sbjct: 121 AMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGN 160


>gi|257812113|gb|ACV69924.1| RecA [Mesorhizobium robiniae]
          Length = 133

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 111/133 (83%), Positives = 126/133 (94%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD
Sbjct: 1   PTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG
Sbjct: 61  PVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMG 120

Query: 169 ESLPGMQARLMSQ 181
           +SLPG+QARLMSQ
Sbjct: 121 DSLPGLQARLMSQ 133


>gi|212286531|dbj|BAG82910.1| RecA protein [Rhizobium sp. 26718]
          Length = 145

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 113/141 (80%), Positives = 126/141 (89%), Gaps = 1/141 (0%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M LGS  ++ E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q
Sbjct: 1   MTLGSYENVVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LV SGA+D++V+D
Sbjct: 60  KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVSSGAIDVLVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPG 173
           SVAALTPRAEIE +MG+SLPG
Sbjct: 120 SVAALTPRAEIEVEMGDSLPG 140


>gi|91981410|gb|ABE68047.1| recombinase [Pseudomonas sp. PITR2]
          Length = 149

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 111/151 (73%), Positives = 128/151 (84%), Gaps = 2/151 (1%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           ++G Q    + I  +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L  IAQ+QK
Sbjct: 1   RMGDQDR--QAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAQAQK 58

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DS
Sbjct: 59  AGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDS 118

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           VAAL P+AEIEG+MG+   G+QARLMSQALR
Sbjct: 119 VAALVPKAEIEGEMGDMHVGLQARLMSQALR 149


>gi|264668486|gb|ACY71622.1| recombinase protein A [Mesorhizobium alhagi]
 gi|264668488|gb|ACY71623.1| recombinase protein A [Mesorhizobium alhagi]
 gi|264668490|gb|ACY71624.1| recombinase protein A [Mesorhizobium alhagi]
 gi|264668492|gb|ACY71625.1| recombinase protein A [Mesorhizobium alhagi]
 gi|264668494|gb|ACY71626.1| recombinase protein A [Mesorhizobium alhagi]
          Length = 132

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 108/131 (82%), Positives = 123/131 (93%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHA
Sbjct: 1   TVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGAVD++V+DSVAALTPRAEIEG+
Sbjct: 61  LDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALTPRAEIEGE 120

Query: 167 MGESLPGMQAR 177
           MG+SLPG+QAR
Sbjct: 121 MGDSLPGLQAR 131


>gi|40641476|emb|CAE51284.1| recombinase A [Haemophilus parainfluenzae]
 gi|40641478|emb|CAE51285.1| recombinase A [Haemophilus parainfluenzae]
 gi|40641480|emb|CAE51286.1| recombinase A [Haemophilus parainfluenzae]
 gi|40641482|emb|CAE51287.1| recombinase A [Haemophilus parainfluenzae]
 gi|161346565|gb|ABX65089.1| recombinase A [Haemophilus parainfluenzae]
 gi|161346567|gb|ABX65090.1| recombinase A [Haemophilus parainfluenzae]
 gi|161346569|gb|ABX65091.1| recombinase A [Haemophilus parainfluenzae]
          Length = 149

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 112/149 (75%), Positives = 129/149 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VS+GSLGLD+ALGIGG P GRIVEI+GPESSGKTTL L  IAQ+QK G TCAF+DAE
Sbjct: 1   VESVSTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKVGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGVD+K LL+SQPD GEQALEI D LVRSGAVD++++DSVAALTP+AEIE
Sbjct: 61  HALDPIYAAKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVVIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193
           G+MG+S  G+QARLMSQALRKLT  I  +
Sbjct: 121 GEMGDSHMGLQARLMSQALRKLTGQIKNA 149


>gi|78059287|gb|ABB18020.1| recombinase A [Pasteurella pneumotropica]
          Length = 149

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 113/147 (76%), Positives = 128/147 (87%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GS+GLDIALGIGG P GRIVEI+GPESSGKTTL L  IAQ+QK G TCAF+DAE
Sbjct: 1   VESISTGSIGLDIALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGVD+K LL+SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIE
Sbjct: 61  HALDPIYAAKLGVDVKELLVSQPDHGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSIS 191
           GDMG+S  G+QARLMSQALRKLT  I 
Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTGQIK 147


>gi|40641488|emb|CAE51290.1| recombinase A [Haemophilus parahaemolyticus]
 gi|40641492|emb|CAE51292.1| recombinase A [Haemophilus parahaemolyticus]
          Length = 149

 Score =  152 bits (383), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 113/149 (75%), Positives = 133/149 (89%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GS+GLD+ALGIGG P GRIVEI+GPESSGKTTL L T+AQ+QKTG TCAF+DAE
Sbjct: 1   IEAVSTGSIGLDMALGIGGLPMGRIVEIFGPESSGKTTLTLSTVAQAQKTGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGV+  +LLISQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIE
Sbjct: 61  HALDPVYAQKLGVNTDDLLISQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193
           GDMG+S  G+QARLMSQALRKLT++I  +
Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTANIKTT 149


>gi|40641502|emb|CAE51297.1| recombinase A [Haemophilus aphrophilus]
 gi|40641510|emb|CAE51301.1| recombinase A [Haemophilus segnis]
 gi|40641512|emb|CAE51302.1| recombinase A [Haemophilus segnis]
 gi|40641514|emb|CAE51303.1| recombinase A [Haemophilus segnis]
 gi|78059281|gb|ABB18017.1| recombinase A [Aggregatibacter segnis]
 gi|78059283|gb|ABB18018.1| recombinase A [Aggregatibacter segnis]
 gi|78059285|gb|ABB18019.1| recombinase A [Aggregatibacter segnis]
          Length = 149

 Score =  152 bits (383), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 112/149 (75%), Positives = 128/149 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GS GLD+ALGIGG P GRIVEI+GPESSGKTTL L  IA++QK G TCAF+DAE
Sbjct: 1   IEAISTGSFGLDLALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAEAQKAGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGVD+K LL+SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIE
Sbjct: 61  HALDPIYASKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193
           GDMG+S  G+QARLMSQALRKLT  I  +
Sbjct: 121 GDMGDSHVGLQARLMSQALRKLTGQIKNA 149


>gi|306569709|gb|ADN03349.1| RecA [Bradyrhizobium liaoningense]
          Length = 144

 Score =  152 bits (383), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 115/144 (79%), Positives = 133/144 (92%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD
Sbjct: 1   SSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALD 60

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG
Sbjct: 61  PVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELEGEMG 120

Query: 169 ESLPGMQARLMSQALRKLTSSISR 192
           ++LPG+Q RLMSQAL KLT+SI++
Sbjct: 121 DALPGLQVRLMSQALLKLTASINK 144


>gi|77557434|gb|ABB00011.1| recombination protein A [Bradyrhizobium sp. CCBAU 23151]
          Length = 146

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 112/142 (78%), Positives = 130/142 (91%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DA
Sbjct: 5   DVETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDA 64

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+
Sbjct: 65  EHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAEL 124

Query: 164 EGDMGESLPGMQARLMSQALRK 185
           EG+MG++LPG+QARLMSQALRK
Sbjct: 125 EGEMGDALPGLQARLMSQALRK 146


>gi|213517040|gb|ACJ49958.1| recombinase A [Dickeya zeae]
          Length = 160

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 115/160 (71%), Positives = 138/160 (86%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ N
Sbjct: 1   GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDN 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQ
Sbjct: 61  LLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
           A+RKL  ++ +S  +L+FINQ+RMKIGVMFG+P+TTTGGN
Sbjct: 121 AMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPKTTTGGN 160


>gi|77557436|gb|ABB00012.1| recombination protein A [Bradyrhizobium sp. CCBAU 43142]
          Length = 149

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 112/150 (74%), Positives = 131/150 (87%), Gaps = 1/150 (0%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
           G        +E +SSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK G
Sbjct: 1   GENDRSM-DVETISSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKG 59

Query: 96  GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
           G CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V+DSVA
Sbjct: 60  GICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVA 119

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           AL P+AE+EG+MG++LPG+QARLMSQALRK
Sbjct: 120 ALVPKAELEGEMGDALPGLQARLMSQALRK 149


>gi|38602341|emb|CAD58026.1| recombinase A [Acetobacter pomorum]
          Length = 152

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 116/152 (76%), Positives = 138/152 (90%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGAVD++V+DSVAAL PRAE+EG+MG+S  G+ ARLMSQALRKLT +++RS  +++F+
Sbjct: 1   VRSGAVDVLVVDSVAALVPRAELEGNMGDSHVGLHARLMSQALRKLTGTVARSNTLMIFL 60

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+R+KIGVMFG+PETTTGGNALKFYSSVR+DIRR+GSIKDKD +TGNQTRVKVVKNKMA
Sbjct: 61  NQIRLKIGVMFGNPETTTGGNALKFYSSVRMDIRRIGSIKDKDEVTGNQTRVKVVKNKMA 120

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
            PF+QVEFDIM  EGIS  GELIDLGVKA +V
Sbjct: 121 PPFRQVEFDIMLREGISKVGELIDLGVKAGVV 152


>gi|261419497|ref|YP_003253179.1| RecA domain protein [Geobacillus sp. Y412MC61]
 gi|319766314|ref|YP_004131815.1| RecA domain protein [Geobacillus sp. Y412MC52]
 gi|261375954|gb|ACX78697.1| RecA domain protein [Geobacillus sp. Y412MC61]
 gi|317111180|gb|ADU93672.1| RecA domain protein [Geobacillus sp. Y412MC52]
          Length = 132

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 84/124 (67%), Positives = 100/124 (80%), Gaps = 2/124 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+  ALE AL QI+R +GKGAIM+LG Q  +   + VV SGSL LDIALG+GG+P+GR
Sbjct: 2   NQDRQAALEQALKQIERQFGKGAIMKLGEQ--VDRKVSVVPSGSLALDIALGVGGYPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEIYGPESSGKTT+ALH IA+ QK GG  AF+DAEHALD IYA+KLGV++  LL+SQPD
Sbjct: 60  IVEIYGPESSGKTTVALHAIAEVQKRGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPD 119

Query: 129 TGEQ 132
           TGEQ
Sbjct: 120 TGEQ 123


>gi|37956348|gb|AAP15352.1| RecA [Desulfuromusa kysingii]
          Length = 177

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 126/174 (72%), Positives = 148/174 (85%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GG  AF+DAEHALD  YA+ LGV   +LLISQPDTGEQALEIT+MLVRSGA+D
Sbjct: 4   IAEVQKQGGVAAFIDAEHALDIQYAQNLGVKADDLLISQPDTGEQALEITEMLVRSGAID 63

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++VIDS AALTPRAEIEG+MG+S  G+QARLMSQALRKLT  +S+S C ++FINQ+RMKI
Sbjct: 64  LLVIDSXAALTPRAEIEGEMGDSHMGLQARLMSQALRKLTGIVSKSNCTILFINQIRMKI 123

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           GVMFG+PETTTGGNALKFY SVRLDIRR+ S+K    + G +TRVKVVKNK+A 
Sbjct: 124 GVMFGNPETTTGGNALKFYCSVRLDIRRIASLKQGQDVVGGRTRVKVVKNKVAP 177


>gi|118185928|gb|ABK76577.1| RecA [Bacillus vietnamensis]
 gi|118185930|gb|ABK76578.1| RecA [Bacillus vietnamensis]
          Length = 156

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 103/155 (66%), Positives = 126/155 (81%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
                 +    SGSL LD ALGIGG+P+GRI+E+YGPESSGKTT+ALH IA+ Q  GG  
Sbjct: 2   EKTDRNVVTCPSGSLALDAALGIGGYPRGRIIEVYGPESSGKTTVALHAIAEVQAQGGQA 61

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AF+DAEHALD  YA+KLGV++  LL+SQPDTGEQALEI + LVRSGAVD IV+DSVAAL 
Sbjct: 62  AFIDAEHALDPEYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDAIVVDSVAALV 121

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           P+AEIEG+MG++  G+QARLMSQALRKL+ +I++S
Sbjct: 122 PKAEIEGEMGDAHVGLQARLMSQALRKLSGAINKS 156


>gi|77557438|gb|ABB00013.1| recombination protein A [Bradyrhizobium sp. CCBAU 43107]
          Length = 148

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 115/148 (77%), Positives = 132/148 (89%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           +      +E VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG 
Sbjct: 1   KNDRSMDVEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGI 60

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL
Sbjct: 61  CAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAAL 120

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRK 185
            P+AE+EG+MG++LPG+QARLMSQALRK
Sbjct: 121 VPKAELEGEMGDALPGLQARLMSQALRK 148


>gi|264668500|gb|ACY71629.1| recombinase protein A [Mesorhizobium tianshanense]
          Length = 132

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 107/131 (81%), Positives = 123/131 (93%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHA
Sbjct: 1   TVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+
Sbjct: 61  LDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGE 120

Query: 167 MGESLPGMQAR 177
           MG+SLPG+QAR
Sbjct: 121 MGDSLPGLQAR 131


>gi|40641496|emb|CAE51294.1| recombinase A [Haemophilus paraphrohaemolyticus]
          Length = 149

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 113/149 (75%), Positives = 132/149 (88%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GS+GLD+ALGIGG P GRIVEI+GPESSGKTTL L TIAQ+QK G TCAF+DAE
Sbjct: 1   IEAVSTGSIGLDMALGIGGLPMGRIVEIFGPESSGKTTLTLSTIAQAQKAGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGV+  +LLISQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIE
Sbjct: 61  HALDPVYAQKLGVNTDDLLISQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193
           GDMG+S  G+QARLMSQALRKLT++I  +
Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTANIKTT 149


>gi|29119657|emb|CAD79377.1| RecA protein [Burkholderia cepacia]
          Length = 138

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 102/138 (73%), Positives = 125/138 (90%)

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 1   EGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNAL 60

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFYSSVRLDIRR+GSIK  D + GN+TRVKVVKNK++ PF++  FDI+YGEGIS  GE+I
Sbjct: 61  KFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEII 120

Query: 284 DLGVKASIVDKSGAWFSF 301
           DLGV+A IVDK+GAW+S+
Sbjct: 121 DLGVQAKIVDKAGAWYSY 138


>gi|224174408|emb|CAR92622.1| recombinase A [Bradyrhizobium canariense]
          Length = 147

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 108/147 (73%), Positives = 126/147 (85%), Gaps = 1/147 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++M+LG        +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A+
Sbjct: 1   SVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V
Sbjct: 60  GQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQAR 177
           IDSVAAL P+A  EG+MG++LPG+QAR
Sbjct: 120 IDSVAALVPKAXXEGEMGDALPGLQAR 146


>gi|213517088|gb|ACJ49982.1| recombinase A [Pectobacterium carotovorum]
 gi|213517166|gb|ACJ50021.1| recombinase A [Pectobacterium betavasculorum]
 gi|213517186|gb|ACJ50031.1| recombinase A [Pectobacterium carotovorum]
          Length = 160

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 115/160 (71%), Positives = 138/160 (86%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ N
Sbjct: 1   GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDN 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQ
Sbjct: 61  LLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
           A+RKL  ++ ++  +L+FINQ+RMKIGVMFG+PETTTGGN
Sbjct: 121 AMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGN 160


>gi|213517108|gb|ACJ49992.1| recombinase A [Dickeya dianthicola]
          Length = 160

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 115/160 (71%), Positives = 137/160 (85%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ N
Sbjct: 1   GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRGGKTCAFIDAEHALDPIYAKKLGVDIDN 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL SQPDTGEQALEI D L RSGA D+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQ
Sbjct: 61  LLCSQPDTGEQALEICDALARSGAGDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
           A+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGN
Sbjct: 121 AMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGN 160


>gi|38602315|emb|CAD58013.1| recombinase A [Gluconacetobacter rhaeticus]
          Length = 143

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 116/143 (81%), Positives = 131/143 (91%)

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT S+SRS  +L+F+NQ+R+KIGV
Sbjct: 1   VVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGSVSRSNTMLIFLNQIRLKIGV 60

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
           MFGSPETTTGGNALKFY+SVR+DIRR+GSIKDKD +TGNQTRVKVVKNKMA PF+QVEFD
Sbjct: 61  MFGSPETTTGGNALKFYASVRMDIRRIGSIKDKDEVTGNQTRVKVVKNKMAPPFRQVEFD 120

Query: 270 IMYGEGISFFGELIDLGVKASIV 292
           IMYGEGIS  GELIDLGVKA IV
Sbjct: 121 IMYGEGISKVGELIDLGVKAGIV 143


>gi|264668496|gb|ACY71627.1| recombinase protein A [Mesorhizobium amorphae]
 gi|264668498|gb|ACY71628.1| recombinase protein A [Mesorhizobium tianshanense]
          Length = 132

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 108/131 (82%), Positives = 123/131 (93%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHA
Sbjct: 1   TVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+
Sbjct: 61  LDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGE 120

Query: 167 MGESLPGMQAR 177
           MG+SLPG+QAR
Sbjct: 121 MGDSLPGLQAR 131


>gi|40641494|emb|CAE51293.1| recombinase A [Haemophilus paraphrohaemolyticus]
          Length = 149

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 113/149 (75%), Positives = 132/149 (88%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GS+GLD+ALGIGG P GRIVEI+GPESSGKTTL L TIAQ+QK G TCAF+DAE
Sbjct: 1   IEAVSTGSIGLDMALGIGGLPMGRIVEIFGPESSGKTTLTLSTIAQAQKAGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YA+KLGV+  +LLISQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIE
Sbjct: 61  HALDPVYAQKLGVNTDDLLISQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193
           GDMG+S  G+QARLMSQALRKLT++I  +
Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTANIKAT 149


>gi|90855324|emb|CAI99182.1| recombinase A [Lactobacillus ingluviei]
          Length = 150

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 97/150 (64%), Positives = 129/150 (86%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +  VSSGSL +D ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ Q+ GGT A++DA
Sbjct: 1   KVATVSSGSLAIDEALGVGGYPRGRIIEMYGPESSGKTTVALHAVAEVQQQGGTAAYIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E+A+D  YA+ LGVD+ NLL+SQPDTGEQ L+I D L+ SGA+DI+V+DSVAAL PRAEI
Sbjct: 61  ENAMDPEYAKALGVDIDNLLLSQPDTGEQGLQIADALISSGAIDIVVVDSVAALVPRAEI 120

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRS 193
           EG+MG++  G+QARLMSQALRKL+ +I+++
Sbjct: 121 EGEMGDAHVGLQARLMSQALRKLSGTINKT 150


>gi|225631107|ref|ZP_03787832.1| recombinase A [Wolbachia endosymbiont of Muscidifurax uniraptor]
 gi|225591198|gb|EEH12355.1| recombinase A [Wolbachia endosymbiont of Muscidifurax uniraptor]
          Length = 153

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 84/146 (57%), Positives = 114/146 (78%)

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           MKIGV++G+PETTTGGNALKFY+SVRLDIR+VG IKDK++ITGN+TRVKVVKNK+A PF+
Sbjct: 1   MKIGVVYGNPETTTGGNALKFYTSVRLDIRKVGVIKDKENITGNETRVKVVKNKVAPPFR 60

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
           + +FDIMY EGIS  GE+ID+G K  +++K+GA++S+   RLGQGREN K +L+ N E+A
Sbjct: 61  EAKFDIMYNEGISKLGEIIDMGAKLGVLEKAGAYYSYNNTRLGQGRENVKTYLKTNKEVA 120

Query: 325 ENIESLLRQNAGLVADSLLQEPAINT 350
             IE+ +R       +S++ +     
Sbjct: 121 NEIETKIRDLLRNHDNSIIIDEDSEQ 146


>gi|91981470|gb|ABE68077.1| recombinase [Pseudomonas sp. Q12-87]
          Length = 149

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 110/151 (72%), Positives = 128/151 (84%), Gaps = 2/151 (1%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           ++G Q    + I  +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L  IAQ+QK
Sbjct: 1   RMGDQDR--QAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAQAQK 58

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            G TCAFVDAEHALD  YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DS
Sbjct: 59  AGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDS 118

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           VAAL P+AEIEG+MG+   G+QARLMS+ALR
Sbjct: 119 VAALVPKAEIEGEMGDMHVGLQARLMSRALR 149


>gi|40641484|emb|CAE51288.1| recombinase A [Haemophilus pittmaniae]
 gi|40641486|emb|CAE51289.1| recombinase A [Haemophilus pittmaniae]
 gi|40641490|emb|CAE51291.1| recombinase A [Haemophilus pittmaniae]
          Length = 149

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 113/149 (75%), Positives = 129/149 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VS+GSLGLD+ALGIGG P GRIVEI+GPESSGKTTL L  IAQ+QK G TCAF+DAE
Sbjct: 1   VESVSTGSLGLDMALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGVD+K LL+SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIE
Sbjct: 61  HALDPIYAAKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193
           G+MG+S  G+QARLMSQALRKLT  I  +
Sbjct: 121 GEMGDSHMGLQARLMSQALRKLTGQIKNA 149


>gi|213950718|gb|ACJ54604.1| recombination protein A [Bradyrhizobium elkanii]
          Length = 144

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 104/143 (72%), Positives = 123/143 (86%), Gaps = 1/143 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
            +M+LG        +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+
Sbjct: 2   TMMKLGKNDRSM-DVETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAE 60

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GG CAF+DAEHALD +YARKLGV++  LLISQPDTGEQALEI D LVRSGAVD++V
Sbjct: 61  GQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 120

Query: 151 IDSVAALTPRAEIEGDMGESLPG 173
           +DSVAAL P+AE+EG+MG++LPG
Sbjct: 121 VDSVAALVPKAELEGEMGDALPG 143


>gi|281491745|ref|YP_003353725.1| recombinase recA, C-terminal fragement [Lactococcus lactis subsp.
           lactis KF147]
 gi|281375459|gb|ADA64969.1| Recombinase RecA, C-terminal fragement [Lactococcus lactis subsp.
           lactis KF147]
          Length = 200

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 79/200 (39%), Positives = 135/200 (67%), Gaps = 3/200 (1%)

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           + +  V++GA D+IV+DSVAALTP +EI+G    S+PG QA++MS+ L KL S ++++K 
Sbjct: 1   MINEFVKTGAFDLIVVDSVAALTPASEIDGV---SIPGQQAKMMSEQLSKLVSKVNQTKT 57

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           +++FINQ+R  +  +F + ETT GG+ALKFYSSVR++++    IKD     G +T +  V
Sbjct: 58  VIIFINQVRSTMSGLFLNKETTPGGSALKFYSSVRIEVKSGEKIKDGIDTIGKKTTLHTV 117

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK+++P+K+     ++G+G S   +++ L ++  +V K   W+SF GQ+LG+G  + K 
Sbjct: 118 KNKVSAPYKKPSVINVFGDGFSQEIDVVTLAIQMGVVKKMNEWYSFNGQKLGRGIFSVKE 177

Query: 316 FLRENIEIAENIESLLRQNA 335
           +L  +  I E ++++ R++ 
Sbjct: 178 YLASHQSIFETLKNITRESL 197


>gi|258677594|gb|ACV87522.1| RecA [uncultured Burkholderia sp.]
          Length = 130

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 92/131 (70%), Positives = 112/131 (85%), Gaps = 1/131 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDS 153
           SG++D+IVIDS
Sbjct: 120 SGSIDMIVIDS 130


>gi|40641516|emb|CAE51304.1| recombinase A [Actinobacillus actinomycetemcomitans]
 gi|78059263|gb|ABB18008.1| recombinase A [Aggregatibacter actinomycetemcomitans]
 gi|78059265|gb|ABB18009.1| recombinase A [Aggregatibacter actinomycetemcomitans]
          Length = 149

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 114/149 (76%), Positives = 130/149 (87%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GS GLD+ALGIGG P GRIVEI+GPESSGKTTL L  IA++QKTG TCAF+DAE
Sbjct: 1   IEAISTGSFGLDLALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAEAQKTGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGVD+K LL+SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIE
Sbjct: 61  HALDPIYASKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193
           GDMG+S  G+QARLMSQALRKLTS I  +
Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTSQIKNA 149


>gi|24251204|gb|AAN46112.1| RecA [Virgibacillus marismortui]
          Length = 157

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 104/157 (66%), Positives = 129/157 (82%)

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           I + LVRSGAVDIIV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I++SK 
Sbjct: 1   IAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAINKSKT 60

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
             +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR  S+K  + + GN+ R+KVV
Sbjct: 61  TAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAESLKQGNDMVGNKARIKVV 120

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           KNK+A PFKQ E DIMYGEGIS  GE++D+G    IV
Sbjct: 121 KNKVAPPFKQAEVDIMYGEGISKEGEILDIGSDLDIV 157


>gi|40641504|emb|CAE51298.1| recombinase A [Haemophilus aphrophilus]
 gi|40641506|emb|CAE51299.1| recombinase A [Haemophilus paraphrophilus]
 gi|40641508|emb|CAE51300.1| recombinase A [Haemophilus paraphrophilus]
 gi|78059269|gb|ABB18011.1| recombinase A [Aggregatibacter aphrophilus]
 gi|78059273|gb|ABB18013.1| recombinase A [Aggregatibacter aphrophilus]
 gi|78059275|gb|ABB18014.1| recombinase A [Aggregatibacter aphrophilus]
 gi|78059277|gb|ABB18015.1| recombinase A [Aggregatibacter aphrophilus]
 gi|78059279|gb|ABB18016.1| recombinase A [Aggregatibacter aphrophilus]
          Length = 149

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 112/149 (75%), Positives = 129/149 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GS GLD+ALGIGG P GRIVEI+GPESSGKTTL L  IA++QK G TCAF+DAE
Sbjct: 1   IEAISTGSFGLDLALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAEAQKNGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGVD+K LL+SQPD GEQALEI D LVRSGAVD++++DSVAALTP+AEIE
Sbjct: 61  HALDPIYASKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVVIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193
           GDMG+S  G+QARLMSQALRKLTS I  +
Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTSQIKNA 149


>gi|78059289|gb|ABB18021.1| recombinase A [Pasteurella aerogenes]
          Length = 149

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 108/148 (72%), Positives = 127/148 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+GSL LD+ALGIGG P GRIVEI+ PESSGKTTL L  IAQ+QK G TCAF+DAE
Sbjct: 1   VEAISTGSLSLDVALGIGGLPMGRIVEIFEPESSGKTTLTLSVIAQAQKQGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGVD+K LL+SQPD GEQALEI D+LVRSGAVD++++DSVAALTP+AEIE
Sbjct: 61  HALDPIYAAKLGVDVKELLVSQPDNGEQALEICDVLVRSGAVDVVIVDSVAALTPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISR 192
           GDMG+S   +QARLMSQALRK T+ I +
Sbjct: 121 GDMGDSHMCLQARLMSQALRKYTAQIKK 148


>gi|180050891|gb|ACB87059.1| RecA [Bacteriovorax sp. NZ8]
          Length = 146

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 100/147 (68%), Positives = 121/147 (82%), Gaps = 1/147 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           AIM+L       E +  +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+
Sbjct: 1   AIMKL-DSEKKLEKVPSISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD+++
Sbjct: 60  CQKAGGTVAFIDAEHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLI 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQAR 177
           +DSVAALTPRAE+EGDMG+S  G+QAR
Sbjct: 120 VDSVAALTPRAELEGDMGDSHMGLQAR 146


>gi|310892467|gb|ADP37378.1| recombinase protein A [Rhizobium sp. CCNWMQ14-1]
          Length = 147

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 116/146 (79%), Positives = 130/146 (89%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
           S       IE + +GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG
Sbjct: 2   SAAGSIVEIETIPTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGG 61

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
            CAFVDAEHALD++YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAA
Sbjct: 62  ICAFVDAEHALDTVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAA 121

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQA 182
           LTPRAEIEG+MG+SLPG+QARLMSQ 
Sbjct: 122 LTPRAEIEGEMGDSLPGLQARLMSQR 147


>gi|114150704|gb|ABI51998.1| recombinase A [Stenotrophomonas maltophilia]
          Length = 172

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 127/172 (73%), Positives = 149/172 (86%), Gaps = 2/172 (1%)

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           LGV++ +LL+SQPDTGEQALEI DMLVRS +VDI+VIDSVAALTP+AEIEG+MG+ LPG+
Sbjct: 1   LGVNVDDLLLSQPDTGEQALEIADMLVRSSSVDIVVIDSVAALTPKAEIEGEMGDQLPGL 60

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLD 232
           QARLMSQALRKLT +I RS  ++VFINQ+R KIGVM    SPE TTGGNALKFY+SVRLD
Sbjct: 61  QARLMSQALRKLTGNIKRSNTLVVFINQLRHKIGVMMPGQSPEVTTGGNALKFYASVRLD 120

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           IRR+G+IK  D I GNQT++KVVKNK+A PFKQV  +I+YGEGIS  GELID
Sbjct: 121 IRRIGAIKKGDEIIGNQTKIKVVKNKLAPPFKQVITEILYGEGISREGELID 172


>gi|180050823|gb|ACB87025.1| RecA [Bacteriovorax sp. JS1]
          Length = 146

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 101/147 (68%), Positives = 122/147 (82%), Gaps = 1/147 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           AIM+L       E +  +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+
Sbjct: 1   AIMKL-DSEKKLEKVPAISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRSGAVD+++
Sbjct: 60  CQKAGGTVAFIDAEHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSGAVDLLI 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQAR 177
           +DSVAALTPRAE+EGDMG+S  G+QAR
Sbjct: 120 VDSVAALTPRAELEGDMGDSHMGLQAR 146


>gi|56181897|gb|AAV83929.1| RecA [Burkholderia cepacia]
          Length = 140

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 98/141 (69%), Positives = 118/141 (83%), Gaps = 1/141 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEAKEDIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VEIYGPESSGKTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPD
Sbjct: 60  VVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPD 119

Query: 129 TGEQALEITDMLVRSGAVDII 149
           TGEQALEITD LVRSG++D+I
Sbjct: 120 TGEQALEITDALVRSGSIDMI 140


>gi|258677598|gb|ACV87524.1| RecA [uncultured Burkholderia sp.]
          Length = 130

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 93/131 (70%), Positives = 112/131 (85%), Gaps = 1/131 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDS 153
           SG++D+IVIDS
Sbjct: 120 SGSIDMIVIDS 130


>gi|294856585|gb|ADF45230.1| DNA strand exchange and recombination protein [Escherichia sp.
           TW14264]
          Length = 169

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 118/168 (70%), Positives = 150/168 (89%)

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           RKLGVD+ NLL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  
Sbjct: 2   RKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHM 61

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+ AR+MSQA+RKL  ++ +S  +L+ INQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD
Sbjct: 62  GLAARMMSQAMRKLAGNLKQSNTLLILINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 121

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           IRR+G++K+ +++ G++TRVKVVKNK+A+PFKQ EF I+YGEGI+F+G
Sbjct: 122 IRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYG 169


>gi|325305330|gb|ADZ06013.1| RecA [Aeromonas veronii bv. sobria]
          Length = 159

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 121/159 (76%), Positives = 143/159 (89%)

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DS
Sbjct: 1   KGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDS 60

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           VAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGS
Sbjct: 61  VAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGS 120

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252
           PETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+TRV
Sbjct: 121 PETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNETRV 159


>gi|213516922|gb|ACJ49899.1| recombinase A [Dickeya zeae]
          Length = 160

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 114/160 (71%), Positives = 138/160 (86%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ N
Sbjct: 1   GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDN 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+A+IEG++G+S  G+ AR+MSQ
Sbjct: 61  LLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAKIEGEIGDSHMGLAARMMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
           A+RKL  ++ +S  +L+FINQ+RMKIGVMFG+P+TTTGGN
Sbjct: 121 AMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPKTTTGGN 160


>gi|78059267|gb|ABB18010.1| recombinase A [Aggregatibacter aphrophilus]
 gi|78059271|gb|ABB18012.1| recombinase A [Aggregatibacter aphrophilus]
          Length = 149

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 111/149 (74%), Positives = 128/149 (85%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +S+GS GLD+ALGIGG P GRIVEI+GPESSGKTTL L  IA++QK G TCAF+DAE
Sbjct: 1   IEAISTGSFGLDLALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAEAQKAGKTCAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD IYA KLGVD+K LL+SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+A+IE
Sbjct: 61  HALDPIYASKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAKIE 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193
           GDMG+S  G+QARLMSQALRKLT  I  +
Sbjct: 121 GDMGDSHVGLQARLMSQALRKLTGQIKNA 149


>gi|180050887|gb|ACB87057.1| RecA [Bacteriovorax sp. NZ9]
          Length = 146

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 99/147 (67%), Positives = 119/147 (80%), Gaps = 1/147 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           AIM+L       E +  +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+
Sbjct: 1   AIMKL-DSEKKLEKVPSISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD+++
Sbjct: 60  CQKAGGTVAFIDAEHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLI 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQAR 177
           +DSVAALTPRAE+EGDMG+S  G Q R
Sbjct: 120 VDSVAALTPRAELEGDMGDSHMGSQPR 146


>gi|37956346|gb|AAP15351.1| RecA [Desulfuromusa bakii]
          Length = 179

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 126/174 (72%), Positives = 147/174 (84%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GG  AF+DAEHALD  YA+ LGV   +LLISQPDTGEQALEIT+MLVRSGA+D
Sbjct: 4   IAEVQKQGGVAAFIDAEHALDIQYAQNLGVKADDLLISQPDTGEQALEITEMLVRSGAID 63

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++VIDSVAALTPRAEIEG+MG+S  G+QARLMSQALRKLT  +S+S C ++FINQ+RMKI
Sbjct: 64  LLVIDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKLTGIVSKSNCTIIFINQIRMKI 123

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           GVMFG+PETTTGGNALKFY SVRLDIRR+ S+K    + G  T VKVVKNK+A 
Sbjct: 124 GVMFGNPETTTGGNALKFYCSVRLDIRRIASLKQGXDVVGGXTPVKVVKNKVAP 177


>gi|197293414|gb|ACH58248.1| recombinase A [Haemophilus sp. CCUG 30048]
          Length = 142

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 108/142 (76%), Positives = 123/142 (86%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+GSLGLD+ALGIGG P GRIVEI+GPESSGKTTL L  IAQ+QK G TCAF+DAEHA
Sbjct: 1   SISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD IYA KLGVD+K L +SQPD GEQALEI D LVRSGA+D+I++DSVAALTP+AEIEG 
Sbjct: 61  LDPIYAAKLGVDVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIEGH 120

Query: 167 MGESLPGMQARLMSQALRKLTS 188
           MG+S  G+QARLMSQALRKLT 
Sbjct: 121 MGDSHMGLQARLMSQALRKLTG 142


>gi|167554604|dbj|BAG07001.1| recombinaseA [Leuconostoc mesenteroides]
          Length = 164

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 109/164 (66%), Positives = 138/164 (84%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S+ +D+ALG+GG+PKGRI+E+YGPESSGKTT+AL  +A+ QK GGT A++DAE+ALD  Y
Sbjct: 1   SVKIDVALGVGGYPKGRIIEVYGPESSGKTTIALXAVAEVQKQGGTAAYIDAENALDVKY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A  LGV    LL+SQPDTGEQ LEI D LV+SGAVD+IV+DSVAAL PRAEIEG+MG++ 
Sbjct: 61  AEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDMIVVDSVAALVPRAEIEGEMGDAH 120

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            G+QARLMSQALRKL  +++R+  I +FINQ+R K+GVMFG+PE
Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPE 164


>gi|258677584|gb|ACV87517.1| RecA [uncultured Burkholderia sp.]
 gi|258677586|gb|ACV87518.1| RecA [uncultured Burkholderia sp.]
          Length = 132

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 92/133 (69%), Positives = 112/133 (84%), Gaps = 1/133 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG++M+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSVMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LL+SQPDTGEQALEI D LVR
Sbjct: 60  LTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSELLVSQPDTGEQALEIADALVR 119

Query: 143 SGAVDIIVIDSVA 155
           SG++D+IVIDSVA
Sbjct: 120 SGSIDMIVIDSVA 132


>gi|110433541|gb|ABG74442.1| RecA [Rickettsia sp. BJ-90]
          Length = 160

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 118/160 (73%), Positives = 141/160 (88%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA++LGV++  L+
Sbjct: 1   VPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKQLGVNIDELI 60

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           ISQPDTGEQALEI D L+RS  +D+I+IDSVAAL P++EIEG+MG++    QARLMSQAL
Sbjct: 61  ISQPDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQAL 120

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           RKLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 121 RKLTASINRTNCIAVFINQIRMKIGVMFGSPETTTGGNAL 160


>gi|180050899|gb|ACB87063.1| RecA [Bacteriovorax sp. NZAH13]
          Length = 145

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 99/146 (67%), Positives = 120/146 (82%), Gaps = 1/146 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+L       E +  +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ 
Sbjct: 1   IMKL-DSEKKLEKVPSISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAEC 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++
Sbjct: 60  QKAGGTVAFIDAEHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIV 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQAR 177
           DSVAALTPRAE+EGDMG+S  G+QAR
Sbjct: 120 DSVAALTPRAELEGDMGDSHMGLQAR 145


>gi|148990150|ref|ZP_01821390.1| recombinase A [Streptococcus pneumoniae SP6-BS73]
 gi|147924544|gb|EDK75632.1| recombinase A [Streptococcus pneumoniae SP6-BS73]
          Length = 174

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 73/159 (45%), Positives = 107/159 (67%), Gaps = 5/159 (3%)

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQ 265
           MFG+PETT GG ALKFY+SVRLD+R    IK     K++  G +T++KVVKNK+A PFK+
Sbjct: 1   MFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKE 60

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
              +IMYGEGIS  GEL+ +     I+ K+GAW+S+K +++GQG EN+K +L E+ EI +
Sbjct: 61  AVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKIGQGSENAKKYLAEHPEIFD 120

Query: 326 NIESLLRQNAGLV-ADSLLQEPAINTKDDADKDDTDNVE 363
            I+  +R   GL+  + + ++   N KD+  K++  N E
Sbjct: 121 EIDKQVRSKFGLIDGEEVSEQDTENKKDEPKKEEAVNEE 159


>gi|258677602|gb|ACV87525.1| RecA [uncultured Burkholderia sp.]
          Length = 130

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 94/131 (71%), Positives = 111/131 (84%), Gaps = 1/131 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDS 153
           SG+VD+IVIDS
Sbjct: 120 SGSVDMIVIDS 130


>gi|5924000|emb|CAB56532.1| RecA protein [Frankia sp. AVN17]
          Length = 169

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 117/167 (70%), Positives = 137/167 (82%)

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            +A +Q  GG  AF+DAEHALD  YA KLGVD   LL+SQPDTGEQALEI DMLVRSGA+
Sbjct: 2   VVANAQAAGGIAAFIDAEHALDPEYAGKLGVDTDALLVSQPDTGEQALEIADMLVRSGAL 61

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R K
Sbjct: 62  DIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALANSGTTAIFINQLREK 121

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
           IGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+TRVK
Sbjct: 122 IGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGAEAVGNRTRVK 168


>gi|213517208|gb|ACJ50042.1| recombinase A [Dickeya zeae]
          Length = 160

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 113/157 (71%), Positives = 135/157 (85%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ N
Sbjct: 1   GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDN 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQ
Sbjct: 61  LLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           A+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTT
Sbjct: 121 AMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTT 157


>gi|180050825|gb|ACB87026.1| RecA [Bacteriovorax sp. PR]
          Length = 145

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 100/146 (68%), Positives = 121/146 (82%), Gaps = 1/146 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+L       E +  +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ 
Sbjct: 1   IMKL-DSEKKLEKVPAISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAEC 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRSGAVD++++
Sbjct: 60  QKAGGTVAFIDAEHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSGAVDLLIV 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQAR 177
           DSVAALTPRAE+EGDMG+S  G+QAR
Sbjct: 120 DSVAALTPRAELEGDMGDSHMGLQAR 145


>gi|180050833|gb|ACB87030.1| RecA [Bacteriovorax sp. GSL4D]
          Length = 143

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 98/143 (68%), Positives = 117/143 (81%), Gaps = 1/143 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           AIM+L       E I  +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+
Sbjct: 1   AIMKL-DSEKKLEKIPAISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD+++
Sbjct: 60  CQKAGGTVAFIDAEHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLI 119

Query: 151 IDSVAALTPRAEIEGDMGESLPG 173
           +DSVAALTPRAE+EGDMG+S  G
Sbjct: 120 VDSVAALTPRAELEGDMGDSHMG 142


>gi|258677616|gb|ACV87532.1| RecA [uncultured Burkholderia sp.]
          Length = 130

 Score =  149 bits (376), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 94/131 (71%), Positives = 110/131 (83%), Gaps = 1/131 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM+LG      E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMKLGD-AEAKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAEMQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDS 153
           SG+VD+IVIDS
Sbjct: 120 SGSVDMIVIDS 130


>gi|12082939|gb|AAG48670.1| RecA protein [Haemophilus influenzae]
          Length = 142

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 110/142 (77%), Positives = 125/142 (88%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+GSLGLD+ALGIGG P GRIVEI+GPESSGKTTL L  IAQ+QKTG TCAF+DAEHA
Sbjct: 1   SISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKTGKTCAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD IYA KLGVD+K L +SQPD GEQALEI D LVRSGA+D+I++DSVAALTP+AEIEGD
Sbjct: 61  LDPIYAAKLGVDVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIEGD 120

Query: 167 MGESLPGMQARLMSQALRKLTS 188
           MG+S  G+QARLMSQALRKLT 
Sbjct: 121 MGDSHMGLQARLMSQALRKLTG 142


>gi|114150696|gb|ABI51994.1| recombinase A [Pseudomonas sp. PTB2050]
          Length = 163

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 116/163 (71%), Positives = 146/163 (89%)

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
           +LGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+   G
Sbjct: 1   QLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVG 60

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
           +QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDI
Sbjct: 61  LQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDI 120

Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276
           RR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+YG+GI
Sbjct: 121 RRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQILYGKGI 163


>gi|98991044|gb|ABF60546.1| RecA [Burkholderia tropica]
          Length = 129

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 93/130 (71%), Positives = 110/130 (84%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRLGD-GDAVENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|229081032|ref|ZP_04213544.1| hypothetical protein bcere0023_36720 [Bacillus cereus Rock4-2]
 gi|228702262|gb|EEL54736.1| hypothetical protein bcere0023_36720 [Bacillus cereus Rock4-2]
          Length = 141

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 74/138 (53%), Positives = 99/138 (71%)

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
            PETT GG ALKFYS+VRL++RR   +K  + I GN+T+VKVVKNK+A PF+  E DIMY
Sbjct: 1   MPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMY 60

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           GEGIS  GE++D+  +  IV KSGAW+S+  +RLGQGRENSK FL+EN ++ E I   +R
Sbjct: 61  GEGISREGEILDMASELDIVQKSGAWYSYNDERLGQGRENSKQFLKENTDLREEIAFFIR 120

Query: 333 QNAGLVADSLLQEPAINT 350
           ++ G+  DS  +    +T
Sbjct: 121 EHHGISEDSGAEGAEDST 138


>gi|117940183|gb|ABK58219.1| recombinase A [Burkholderia thailandensis]
          Length = 129

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 91/130 (70%), Positives = 109/130 (83%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRLGD-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEI D LVRS
Sbjct: 60  TLQVVAEMQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEIVDALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|264668506|gb|ACY71632.1| recombinase protein A [Rhizobium indigoferae]
          Length = 132

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 108/131 (82%), Positives = 124/131 (94%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+GSLGLDIALG+GG P+GRI++IYGPESSGKTTLAL TIA++QK GG CAFVDAEHA
Sbjct: 1   TISTGSLGLDIALGVGGLPRGRIIQIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+
Sbjct: 61  LDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGE 120

Query: 167 MGESLPGMQAR 177
           MG+SLPG+QAR
Sbjct: 121 MGDSLPGLQAR 131


>gi|258677588|gb|ACV87519.1| RecA [uncultured Burkholderia sp.]
 gi|258677592|gb|ACV87521.1| RecA [uncultured Burkholderia sp.]
 gi|258677596|gb|ACV87523.1| RecA [uncultured Burkholderia sp.]
          Length = 130

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 93/131 (70%), Positives = 111/131 (84%), Gaps = 1/131 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVR
Sbjct: 60  LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 119

Query: 143 SGAVDIIVIDS 153
           SG++D+IVIDS
Sbjct: 120 SGSIDMIVIDS 130


>gi|228909603|ref|ZP_04073426.1| hypothetical protein bthur0013_37550 [Bacillus thuringiensis IBL
           200]
 gi|229098248|ref|ZP_04229195.1| hypothetical protein bcere0020_34820 [Bacillus cereus Rock3-29]
 gi|229117265|ref|ZP_04246643.1| hypothetical protein bcere0017_35450 [Bacillus cereus Rock1-3]
 gi|228666165|gb|EEL21629.1| hypothetical protein bcere0017_35450 [Bacillus cereus Rock1-3]
 gi|228685146|gb|EEL39077.1| hypothetical protein bcere0020_34820 [Bacillus cereus Rock3-29]
 gi|228849892|gb|EEM94723.1| hypothetical protein bthur0013_37550 [Bacillus thuringiensis IBL
           200]
          Length = 141

 Score =  149 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 75/141 (53%), Positives = 101/141 (71%)

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
            PETT GG ALKFYS+VRL++RR   +K  + I GN+T+VKVVKNK+A PF+  E DIMY
Sbjct: 1   MPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMY 60

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           GEGIS  GE++D+  +  IV KSGAW+S+  +RLGQGRENSK FL+EN ++ E I   +R
Sbjct: 61  GEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFVR 120

Query: 333 QNAGLVADSLLQEPAINTKDD 353
            + G+  DS +++   +T  D
Sbjct: 121 DHHGIGEDSGVEDTEDSTLQD 141


>gi|22094651|gb|AAM91951.1|AF525717_1 RecA protein [Haemophilus influenzae]
 gi|22094653|gb|AAM91952.1|AF525718_1 RecA protein [Haemophilus influenzae]
 gi|22094655|gb|AAM91953.1|AF525719_1 RecA protein [Haemophilus influenzae]
 gi|22094657|gb|AAM91954.1|AF525720_1 RecA protein [Haemophilus influenzae]
 gi|12082917|gb|AAG48659.1| RecA protein [Haemophilus influenzae]
 gi|12082919|gb|AAG48660.1| RecA protein [Haemophilus influenzae]
 gi|12082921|gb|AAG48661.1| RecA protein [Haemophilus influenzae]
 gi|12082923|gb|AAG48662.1| RecA protein [Haemophilus influenzae]
 gi|12082925|gb|AAG48663.1| RecA protein [Haemophilus influenzae]
 gi|12082927|gb|AAG48664.1| RecA protein [Haemophilus influenzae]
 gi|12082929|gb|AAG48665.1| RecA protein [Haemophilus influenzae]
 gi|12082931|gb|AAG48666.1| RecA protein [Haemophilus influenzae]
 gi|12082933|gb|AAG48667.1| RecA protein [Haemophilus influenzae]
 gi|12082935|gb|AAG48668.1| RecA protein [Haemophilus influenzae]
 gi|12082937|gb|AAG48669.1| RecA protein [Haemophilus influenzae]
 gi|12082941|gb|AAG48671.1| RecA protein [Haemophilus influenzae]
 gi|12082943|gb|AAG48672.1| RecA protein [Haemophilus influenzae]
 gi|12082945|gb|AAG48673.1| RecA protein [Haemophilus influenzae]
 gi|12082947|gb|AAG48674.1| RecA protein [Haemophilus influenzae]
 gi|12082949|gb|AAG48675.1| RecA protein [Haemophilus influenzae]
 gi|12082951|gb|AAG48676.1| RecA protein [Haemophilus influenzae]
 gi|12082953|gb|AAG48677.1| RecA protein [Haemophilus influenzae]
 gi|12082955|gb|AAG48678.1| RecA protein [Haemophilus influenzae]
 gi|12082957|gb|AAG48679.1| RecA protein [Haemophilus influenzae]
 gi|12082959|gb|AAG48680.1| RecA protein [Haemophilus influenzae]
 gi|12082961|gb|AAG48681.1| RecA protein [Haemophilus influenzae]
 gi|12082963|gb|AAG48682.1| RecA protein [Haemophilus influenzae]
 gi|12082965|gb|AAG48683.1| RecA protein [Haemophilus influenzae]
 gi|12082967|gb|AAG48684.1| RecA protein [Haemophilus influenzae]
 gi|12082969|gb|AAG48685.1| RecA protein [Haemophilus influenzae]
 gi|12082971|gb|AAG48686.1| RecA protein [Haemophilus influenzae]
 gi|12082973|gb|AAG48687.1| RecA protein [Haemophilus influenzae]
 gi|12082975|gb|AAG48688.1| RecA protein [Haemophilus influenzae]
 gi|12082977|gb|AAG48689.1| RecA protein [Haemophilus influenzae]
 gi|12082979|gb|AAG48690.1| RecA protein [Haemophilus influenzae]
 gi|12082981|gb|AAG48691.1| RecA protein [Haemophilus influenzae]
 gi|12082983|gb|AAG48692.1| RecA protein [Haemophilus influenzae]
 gi|12082985|gb|AAG48693.1| RecA protein [Haemophilus influenzae]
 gi|12082987|gb|AAG48694.1| RecA protein [Haemophilus influenzae]
 gi|12082989|gb|AAG48695.1| RecA protein [Haemophilus influenzae]
 gi|30061234|gb|AAP19991.1| RecA protein [Haemophilus influenzae]
 gi|30061236|gb|AAP19992.1| RecA protein [Haemophilus influenzae]
 gi|30061238|gb|AAP19993.1| RecA protein [Haemophilus influenzae]
 gi|30061240|gb|AAP19994.1| RecA protein [Haemophilus influenzae]
 gi|30061242|gb|AAP19995.1| RecA protein [Haemophilus influenzae]
 gi|30061244|gb|AAP19996.1| RecA protein [Haemophilus influenzae]
 gi|30061246|gb|AAP19997.1| RecA protein [Haemophilus influenzae]
 gi|30061248|gb|AAP19998.1| RecA protein [Haemophilus influenzae]
 gi|30061250|gb|AAP19999.1| RecA protein [Haemophilus influenzae]
 gi|30061252|gb|AAP20000.1| RecA protein [Haemophilus influenzae]
 gi|30061254|gb|AAP20001.1| RecA protein [Haemophilus influenzae]
 gi|30061256|gb|AAP20002.1| RecA protein [Haemophilus influenzae]
 gi|30061258|gb|AAP20003.1| RecA protein [Haemophilus influenzae]
 gi|30061260|gb|AAP20004.1| RecA protein [Haemophilus influenzae]
 gi|32454003|gb|AAP74422.1| recombination protein [Haemophilus influenzae]
 gi|32454005|gb|AAP74423.1| recombination protein [Haemophilus influenzae]
 gi|32454007|gb|AAP74424.1| recombination protein [Haemophilus influenzae]
 gi|32454009|gb|AAP74425.1| recombination protein [Haemophilus influenzae]
 gi|32454011|gb|AAP74426.1| recombination protein [Haemophilus influenzae]
 gi|32454013|gb|AAP74427.1| recombination protein [Haemophilus influenzae]
 gi|32454015|gb|AAP74428.1| recombination protein [Haemophilus influenzae]
 gi|32454017|gb|AAP74429.1| recombination protein [Haemophilus influenzae]
 gi|53655929|gb|AAU89320.1| recombination protein [Haemophilus influenzae]
 gi|62125789|gb|AAX63808.1| RecA [Haemophilus quentini]
 gi|89257897|gb|ABD65227.1| RecA [Haemophilus sp. COAD036]
 gi|89257899|gb|ABD65228.1| RecA [Haemophilus sp. COAD165]
 gi|89257901|gb|ABD65229.1| RecA [Haemophilus sp. COAD591]
 gi|197293386|gb|ACH58234.1| recombinase A [Haemophilus sp. 11PS]
 gi|197293388|gb|ACH58235.1| recombinase A [Haemophilus sp. 16N]
 gi|197293390|gb|ACH58236.1| recombinase A [Haemophilus sp. 26E]
 gi|197293392|gb|ACH58237.1| recombinase A [Haemophilus sp. CCUG 11096]
 gi|197293394|gb|ACH58238.1| recombinase A [Haemophilus sp. CCUG 13929]
 gi|197293396|gb|ACH58239.1| recombinase A [Haemophilus sp. CCUG 15793]
 gi|197293398|gb|ACH58240.1| recombinase A [Haemophilus sp. CCUG 15794]
 gi|197293400|gb|ACH58241.1| recombinase A [Haemophilus sp. CCUG 15949]
 gi|197293402|gb|ACH58242.1| recombinase A [Haemophilus sp. CCUG 17210]
 gi|197293404|gb|ACH58243.1| recombinase A [Haemophilus sp. CCUG 17783]
 gi|197293406|gb|ACH58244.1| recombinase A [Haemophilus sp. CCUG 18082]
 gi|197293408|gb|ACH58245.1| recombinase A [Haemophilus sp. CCUG 23622]
 gi|197293410|gb|ACH58246.1| recombinase A [Haemophilus sp. CCUG 24145]
 gi|197293412|gb|ACH58247.1| recombinase A [Haemophilus sp. CCUG 30047]
 gi|197293416|gb|ACH58249.1| recombinase A [Haemophilus sp. CCUG 30218]
 gi|197293418|gb|ACH58250.1| recombinase A [Haemophilus sp. CCUG 31732]
 gi|197293420|gb|ACH58251.1| recombinase A [Haemophilus sp. CCUG 32367]
 gi|197293422|gb|ACH58252.1| recombinase A [Haemophilus sp. CCUG 35214]
 gi|197293424|gb|ACH58253.1| recombinase A [Haemophilus sp. CCUG 36040]
 gi|197293426|gb|ACH58254.1| recombinase A [Haemophilus sp. CCUG 43251]
 gi|197293428|gb|ACH58255.1| recombinase A [Haemophilus sp. CCUG 44661]
 gi|197293430|gb|ACH58256.1| recombinase A [Haemophilus sp. CCUG 50565]
 gi|197293432|gb|ACH58257.1| recombinase A [Haemophilus haemolyticus]
 gi|197293434|gb|ACH58258.1| recombinase A [Haemophilus sp. HK 676]
 gi|197293436|gb|ACH58259.1| recombinase A [Haemophilus sp. HK855]
 gi|197293438|gb|ACH58260.1| recombinase A [Haemophilus sp. PN24]
 gi|198385845|gb|ACH86233.1| RecA [Haemophilus influenzae]
 gi|259490892|gb|ACW82430.1| RecA protein [Haemophilus influenzae]
 gi|259490900|gb|ACW82434.1| RecA protein [Haemophilus influenzae]
          Length = 142

 Score =  149 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 109/142 (76%), Positives = 124/142 (87%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+GSLGLD+ALGIGG P GRIVEI+GPESSGKTTL L  IAQ+QK G TCAF+DAEHA
Sbjct: 1   SISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD IYA KLGVD+K L +SQPD GEQALEI D LVRSGA+D+I++DSVAALTP+AEIEGD
Sbjct: 61  LDPIYAAKLGVDVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIEGD 120

Query: 167 MGESLPGMQARLMSQALRKLTS 188
           MG+S  G+QARLMSQALRKLT 
Sbjct: 121 MGDSHMGLQARLMSQALRKLTG 142


>gi|312271202|gb|ADQ57298.1| RecA [Rhizobium pongamiae]
          Length = 132

 Score =  149 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 107/129 (82%), Positives = 120/129 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDA
Sbjct: 4   EVETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDA 63

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL++LLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEI
Sbjct: 64  EHALDPVYARKLGVDLQSLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEI 123

Query: 164 EGDMGESLP 172
           EG+MG+SLP
Sbjct: 124 EGEMGDSLP 132


>gi|258677612|gb|ACV87530.1| RecA [uncultured Burkholderia sp.]
          Length = 130

 Score =  149 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 90/131 (68%), Positives = 111/131 (84%), Gaps = 1/131 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG++M+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSVMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +A+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LVR
Sbjct: 60  LTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVR 119

Query: 143 SGAVDIIVIDS 153
           SG++D+IVIDS
Sbjct: 120 SGSIDMIVIDS 130


>gi|110433555|gb|ABG74449.1| RecA [Rickettsia africae]
 gi|110433559|gb|ABG74451.1| RecA [Rickettsia mongolotimonae]
          Length = 160

 Score =  149 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 119/160 (74%), Positives = 141/160 (88%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA+KLGV++  L+
Sbjct: 1   VPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELI 60

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           ISQPDTGEQALEI D L+RS  +D+I+IDSVAAL P++EIEG+MG++    QARLMSQAL
Sbjct: 61  ISQPDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQAL 120

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           RKLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 121 RKLTASINRTNCIAVFINQIRMKIGVMFGSPETTTGGNAL 160


>gi|325650704|emb|CBY89535.1| RecA protein [Rhizobium leguminosarum]
          Length = 153

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 115/149 (77%), Positives = 136/149 (91%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSLGLBIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFV A
Sbjct: 5   EIETISTGSLGLBIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVXA 64

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGV L+NLLISQPDTGEQ LZI D LVRSG VB++V+DSVAALTPRAEI
Sbjct: 65  EHALDPVYARKLGVXLQNLLISQPDTGEQXLZIXDTLVRSGXVBVLVVDSVAALTPRAEI 124

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISR 192
           ZG+MG+SLPG+QARLMSQALRKLT+SIS+
Sbjct: 125 ZGEMGDSLPGLQARLMSQALRKLTASISK 153


>gi|180050885|gb|ACB87056.1| RecA [Bacteriovorax sp. JDF]
          Length = 142

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 97/143 (67%), Positives = 117/143 (81%), Gaps = 1/143 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           AIM+L       E +  +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+
Sbjct: 1   AIMKL-DSEKKLEKVPSISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD+++
Sbjct: 60  CQKAGGTVAFIDAEHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLI 119

Query: 151 IDSVAALTPRAEIEGDMGESLPG 173
           +DSVAALTPRAE+EGDMG+S  G
Sbjct: 120 VDSVAALTPRAELEGDMGDSHMG 142


>gi|255686524|gb|ACU28751.1| recombination protein A [Yersinia ruckeri]
 gi|255686526|gb|ACU28752.1| recombination protein A [Yersinia ruckeri]
 gi|255686528|gb|ACU28753.1| recombination protein A [Yersinia ruckeri ATCC 29473]
 gi|255686530|gb|ACU28754.1| recombination protein A [Yersinia aldovae ATCC 35236]
          Length = 140

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 103/140 (73%), Positives = 120/140 (85%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHA
Sbjct: 1   TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG+
Sbjct: 61  LDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKL 186
           +G+S  G+ AR+MSQA+RKL
Sbjct: 121 IGDSHMGLAARMMSQAMRKL 140


>gi|255686532|gb|ACU28755.1| recombination protein A [Yersinia bercovieri ATCC 43970]
 gi|255686534|gb|ACU28756.1| recombination protein A [Yersinia enterocolitica]
 gi|255686536|gb|ACU28757.1| recombination protein A [Yersinia enterocolitica]
 gi|255686538|gb|ACU28758.1| recombination protein A [Yersinia enterocolitica]
 gi|255686542|gb|ACU28760.1| recombination protein A [Yersinia enterocolitica]
 gi|255686546|gb|ACU28762.1| recombination protein A [Yersinia pestis]
          Length = 140

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 103/140 (73%), Positives = 120/140 (85%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHA
Sbjct: 1   TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG+
Sbjct: 61  LDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKL 186
           +G+S  G+ AR+MSQA+RKL
Sbjct: 121 IGDSHMGLAARMMSQAMRKL 140


>gi|180050897|gb|ACB87062.1| RecA [Bacteriovorax sp. NZAH11]
          Length = 145

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 96/146 (65%), Positives = 118/146 (80%), Gaps = 1/146 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+L       E +  +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ 
Sbjct: 1   IMKL-DSEKKLEKVPSISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAEC 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++
Sbjct: 60  QKAGGTVAFIDAEHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIV 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQAR 177
           DSVAALTPRAE+EGDMG+S  G+  +
Sbjct: 120 DSVAALTPRAELEGDMGDSHMGLPGQ 145


>gi|98991042|gb|ABF60545.1| RecA [Burkholderia unamae MTI-641]
          Length = 129

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 92/130 (70%), Positives = 109/130 (83%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRLGD-GDAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEI D LVRS
Sbjct: 60  TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEIADALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|110433543|gb|ABG74443.1| RecA [Rickettsia japonica]
 gi|110433547|gb|ABG74445.1| RecA [Rickettsia sp. A-167]
 gi|110433551|gb|ABG74447.1| RecA [Rickettsia rickettsii]
 gi|110433561|gb|ABG74452.1| RecA [Israeli tick typhus rickettsia]
 gi|110433563|gb|ABG74453.1| RecA [Israeli tick typhus rickettsia]
 gi|110433565|gb|ABG74454.1| RecA [Israeli tick typhus rickettsia]
 gi|110433567|gb|ABG74455.1| RecA [Rickettsia conorii]
 gi|110433569|gb|ABG74456.1| RecA [Israeli tick typhus rickettsia]
 gi|110433571|gb|ABG74457.1| RecA [Rickettsia conorii]
          Length = 160

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 119/160 (74%), Positives = 141/160 (88%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA+KLGV++  L+
Sbjct: 1   VPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELI 60

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           ISQPDTGEQALEI D L+RS  +D+I+IDSVAAL P++EIEG+MG++    QARLMSQAL
Sbjct: 61  ISQPDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQAL 120

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           RKLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 121 RKLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNAL 160


>gi|325305336|gb|ADZ06016.1| RecA [Aeromonas veronii bv. sobria]
          Length = 158

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 120/158 (75%), Positives = 142/158 (89%)

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DS
Sbjct: 1   KGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDS 60

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           VAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGS
Sbjct: 61  VAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGS 120

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           PETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+TR
Sbjct: 121 PETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNETR 158


>gi|180050893|gb|ACB87060.1| RecA [Bacteriovorax sp. NZAH14]
          Length = 144

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 96/145 (66%), Positives = 117/145 (80%), Gaps = 1/145 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+L       E +  +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ 
Sbjct: 1   IMKL-DSEKKLEKVPSISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAEC 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++
Sbjct: 60  QKAGGTVAFIDAEHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIV 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQA 176
           DSVAALTPRAE+EGDMG+S  G + 
Sbjct: 120 DSVAALTPRAELEGDMGDSHMGSRQ 144


>gi|258677590|gb|ACV87520.1| RecA [uncultured Burkholderia sp.]
          Length = 130

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 90/131 (68%), Positives = 110/131 (83%), Gaps = 1/131 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG++M+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSVMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LL+SQPDTGEQALEI D LVR
Sbjct: 60  LTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNELLVSQPDTGEQALEIADALVR 119

Query: 143 SGAVDIIVIDS 153
           SG++D+IVIDS
Sbjct: 120 SGSIDMIVIDS 130


>gi|110433549|gb|ABG74446.1| RecA [Rickettsia felis]
          Length = 160

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 119/160 (74%), Positives = 142/160 (88%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA+KLGV++  L+
Sbjct: 1   VPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELI 60

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           ISQPDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++    QARLMSQAL
Sbjct: 61  ISQPDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQAL 120

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           RKLT+SI+R+ CI VFINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 121 RKLTASINRTNCITVFINQIRMKIGVMFGNPETTTGGNAL 160


>gi|258677604|gb|ACV87526.1| RecA [uncultured Burkholderia sp.]
          Length = 130

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 91/131 (69%), Positives = 112/131 (85%), Gaps = 1/131 (0%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++ +GKG++M+LG  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT
Sbjct: 1   IEKQFGKGSVMRLG-AGEVIEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LVR
Sbjct: 60  LTLQVIAEMQKIGGTAAFIDAEHALDIQYASKLGVNVNDLLVSQPDTGEQALEIADALVR 119

Query: 143 SGAVDIIVIDS 153
           SG++D+IVIDS
Sbjct: 120 SGSIDMIVIDS 130


>gi|71089184|gb|AAZ23670.1| RecA [uncultured Burkholderia sp.]
          Length = 129

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 90/130 (69%), Positives = 110/130 (84%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GDVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  +A+ QK GGT A +DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVVAELQKLGGTAALIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|110433573|gb|ABG74458.1| RecA [Rickettsia helvetica]
          Length = 160

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 120/160 (75%), Positives = 142/160 (88%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA+KLGV++  L+
Sbjct: 1   VPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELI 60

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           ISQPDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++    QARLMSQAL
Sbjct: 61  ISQPDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQAL 120

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           RKLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 121 RKLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNAL 160


>gi|110433553|gb|ABG74448.1| RecA [Rickettsia canadensis]
          Length = 160

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 119/160 (74%), Positives = 142/160 (88%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA+KLGV++  L+
Sbjct: 1   VPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELI 60

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           ISQPDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++    QARLMSQAL
Sbjct: 61  ISQPDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQAL 120

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           RKLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGG+AL
Sbjct: 121 RKLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGHAL 160


>gi|206972643|ref|ZP_03233585.1| RecA protein [Bacillus cereus AH1134]
 gi|229071276|ref|ZP_04204500.1| hypothetical protein bcere0025_34500 [Bacillus cereus F65185]
 gi|229180057|ref|ZP_04307401.1| hypothetical protein bcere0005_34030 [Bacillus cereus 172560W]
 gi|206732456|gb|EDZ49636.1| RecA protein [Bacillus cereus AH1134]
 gi|228603266|gb|EEK60743.1| hypothetical protein bcere0005_34030 [Bacillus cereus 172560W]
 gi|228711897|gb|EEL63848.1| hypothetical protein bcere0025_34500 [Bacillus cereus F65185]
          Length = 141

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 74/138 (53%), Positives = 99/138 (71%)

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
            PETT GG ALKFYS+VRL++RR   +K  + I GN+T+VKVVKNK+A PF+  E DIMY
Sbjct: 1   MPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMY 60

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           GEGIS  GE++D+  +  IV KSGAW+S+  +RLGQGRENSK FL+EN ++ E I   +R
Sbjct: 61  GEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFIR 120

Query: 333 QNAGLVADSLLQEPAINT 350
           ++ G+  DS  +    +T
Sbjct: 121 EHHGISEDSGAEGAEDST 138


>gi|110433557|gb|ABG74450.1| RecA [Rickettsia akari]
          Length = 160

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 121/160 (75%), Positives = 143/160 (89%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD  YA+KLGV++  L+
Sbjct: 1   VPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELI 60

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           ISQPDTGEQALEITD L+RSG +D+I+IDSVAAL P++EIEG+MG++    QARLMSQAL
Sbjct: 61  ISQPDTGEQALEITDTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQAL 120

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           RKLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 121 RKLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNAL 160


>gi|264668512|gb|ACY71635.1| recombinase protein A [Agrobacterium tumefaciens]
          Length = 132

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 110/131 (83%), Positives = 123/131 (93%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHA
Sbjct: 1   TVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGVDL++LLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+
Sbjct: 61  LDPVYARKLGVDLQSLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGE 120

Query: 167 MGESLPGMQAR 177
           MG+SLPG+QAR
Sbjct: 121 MGDSLPGLQAR 131


>gi|281414272|ref|ZP_06246014.1| protein RecA [Micrococcus luteus NCTC 2665]
          Length = 103

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 64/105 (60%), Positives = 85/105 (80%), Gaps = 2/105 (1%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D+ KALEAAL+QI + +GKG++M+LG Q      +EV+ +GS+ +D+ALGIGG P+GR
Sbjct: 1   MTDREKALEAALAQIDKQFGKGSVMRLGDQTQA--PVEVIPTGSVAMDVALGIGGLPRGR 58

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           +VEIYGPESSGKTTLALH +A +Q+ GG  AF+DAEHALD +YAR
Sbjct: 59  VVEIYGPESSGKTTLALHAVANAQRNGGIAAFIDAEHALDPVYAR 103


>gi|264668510|gb|ACY71634.1| recombinase protein A [Phyllobacterium trifolii]
          Length = 132

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 110/131 (83%), Positives = 123/131 (93%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+GSLGLDIALG+GG P GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHA
Sbjct: 1   TVSTGSLGLDIALGVGGLPNGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+
Sbjct: 61  LDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGE 120

Query: 167 MGESLPGMQAR 177
           MG+SLPG+QAR
Sbjct: 121 MGDSLPGLQAR 131


>gi|117940181|gb|ABK58218.1| recombinase A [Burkholderia ubonensis]
 gi|213389262|gb|ACJ45766.1| RecA [Burkholderia sp. VSB017]
 gi|213389264|gb|ACJ45767.1| RecA [Burkholderia sp. SIB010]
          Length = 129

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 92/130 (70%), Positives = 110/130 (84%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|213389246|gb|ACJ45758.1| RecA [Burkholderia sp. SIB005]
          Length = 129

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 92/130 (70%), Positives = 110/130 (84%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
            + +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   DKQFGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAEPQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|268308927|gb|ACY95424.1| recombination protein A [Rhizobium sp. CCBAU 83006]
          Length = 145

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 121/145 (83%), Positives = 137/145 (94%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NL
Sbjct: 1   GLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNL 60

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           LISQPDTGEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQA
Sbjct: 61  LISQPDTGEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQA 120

Query: 183 LRKLTSSISRSKCILVFINQMRMKI 207
           LRKLT+SIS+S  +++FINQ+RMKI
Sbjct: 121 LRKLTASISKSNTMVIFINQIRMKI 145


>gi|117940187|gb|ABK58221.1| recombinase A [Burkholderia ubonensis]
 gi|213389236|gb|ACJ45753.1| RecA [Burkholderia sp. ZM004]
          Length = 129

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 92/130 (70%), Positives = 110/130 (84%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|222097225|ref|YP_002531282.1| reca protein (recombinase a), c-terminal region [Bacillus cereus
           Q1]
 gi|221241283|gb|ACM13993.1| recA protein (recombinase A), C-terminal region [Bacillus cereus
           Q1]
          Length = 131

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/128 (55%), Positives = 95/128 (74%)

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
            PETT GG ALKFYS+VRL++RR   +K  + I GN+T+VKVVKNK+A PF+  E DIMY
Sbjct: 1   MPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMY 60

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           GEGIS  GE++D+  +  IV KSGAW+S+  +RLGQGRENSK FL+EN ++ E I   +R
Sbjct: 61  GEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFIR 120

Query: 333 QNAGLVAD 340
           ++ G+  +
Sbjct: 121 EHHGISEE 128


>gi|110433545|gb|ABG74444.1| RecA [Rickettsia australis]
          Length = 160

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 120/160 (75%), Positives = 142/160 (88%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            PKGRI+EI+GPESSGKTTL LH IA++QK GG CAF+DAEHALD  YA+KLGV++  L+
Sbjct: 1   VPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGICAFIDAEHALDPAYAKKLGVNIDELI 60

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           ISQPDTGEQALEITD L+RSG +D+I+IDSVAAL P++EIEG+MG++    QARLMSQAL
Sbjct: 61  ISQPDTGEQALEITDTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQAL 120

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           RKLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 121 RKLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNAL 160


>gi|213389240|gb|ACJ45755.1| RecA [Burkholderia sp. ZM008]
          Length = 129

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 91/130 (70%), Positives = 108/130 (83%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
            + +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   DKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LV S
Sbjct: 60  TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVCS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|206977914|ref|ZP_03238802.1| recA protein, group I intron-containing [Bacillus cereus H3081.97]
 gi|217961200|ref|YP_002339768.1| recA protein, group I intron-containing [Bacillus cereus AH187]
 gi|229140420|ref|ZP_04268975.1| hypothetical protein bcere0013_35190 [Bacillus cereus BDRD-ST26]
 gi|229197890|ref|ZP_04324606.1| hypothetical protein bcere0001_34260 [Bacillus cereus m1293]
 gi|206743914|gb|EDZ55333.1| recA protein, group I intron-containing [Bacillus cereus H3081.97]
 gi|217067311|gb|ACJ81561.1| recA protein, group I intron-containing [Bacillus cereus AH187]
 gi|228585608|gb|EEK43710.1| hypothetical protein bcere0001_34260 [Bacillus cereus m1293]
 gi|228642981|gb|EEK99257.1| hypothetical protein bcere0013_35190 [Bacillus cereus BDRD-ST26]
 gi|324327673|gb|ADY22933.1| recombinase A [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 141

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 73/133 (54%), Positives = 98/133 (73%)

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
            PETT GG ALKFYS+VRL++RR   +K  + I GN+T+VKVVKNK+A PF+  E DIMY
Sbjct: 1   MPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMY 60

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           GEGIS  GE++D+  +  IV KSGAW+S+  +RLGQGRENSK FL+EN ++ E I   +R
Sbjct: 61  GEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFIR 120

Query: 333 QNAGLVADSLLQE 345
           ++ G+  DS  ++
Sbjct: 121 EHHGISEDSGAED 133


>gi|291526297|emb|CBK91884.1| RecA/RadA recombinase [Eubacterium rectale DSM 17629]
          Length = 336

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 87/336 (25%), Positives = 161/336 (47%), Gaps = 23/336 (6%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           ++  ++++ + Y K  I++   + S  +GIE +   S  ++  L  GG P GRI+E+ G 
Sbjct: 4   IDNLIAEVNKKY-KTDIIR---KASDLKGIEFIPYTSPMMNY-LTRGGVPVGRIIELVGL 58

Query: 76  ESSGKTTLALHTIAQSQ--KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG--E 131
             SGKTT AL  I+  Q   T   C ++DAE+ +D  +   LGVD   +++ QP++   E
Sbjct: 59  PQSGKTTTALDIISNFQKKYTDKYCVYLDAENTIDKEWGETLGVDWSKVILIQPESEYGE 118

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           + L++    +RSG V + V+DS   + P+A  E  + E   G  + LM     K      
Sbjct: 119 ELLDMLLDYIRSGKVGLAVLDSAPFIIPKAVQEKGLDEKSYGGNSALMKAFCDKAVPLCK 178

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--------D 243
           +++C  + INQ+R  IG  +   +   G  A+    S  L   +   + +K         
Sbjct: 179 KTECTFLMINQLRENIGNPYKPFKIPCGT-AIAHACSQILWFTKGSLLDEKYKEVSSGYA 237

Query: 244 SITGNQTRVKVVKNKMASPFKQVE-FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF- 301
           + +G+   VKV KNK+    ++++ + + Y  G+    + +DL +   I+ ++GAW+   
Sbjct: 238 NPSGHLVSVKVEKNKVTKNDRRLQTYTLNYSTGVDEIKDTLDLAIMLGIISQAGAWYKAT 297

Query: 302 ---KGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
                ++  QG    + F   ++E  E +   + + 
Sbjct: 298 LKDGKEQKMQGFNGVQEFYYNDLEELEYLRKQVYEA 333


>gi|264668514|gb|ACY71636.1| recombinase protein A [Phyllobacterium trifolii]
          Length = 132

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 110/131 (83%), Positives = 122/131 (93%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHA
Sbjct: 1   TVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGVDL+ LLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+
Sbjct: 61  LDPVYARKLGVDLQGLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGE 120

Query: 167 MGESLPGMQAR 177
           MG+SLPG+QAR
Sbjct: 121 MGDSLPGLQAR 131


>gi|24251188|gb|AAN46109.1| RecA [Bacillus cereus]
          Length = 150

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 98/150 (65%), Positives = 123/150 (82%)

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSVAAL P+AEIEGDMG+S  G+QARLMSQALRKL+ +I++SK I +FINQ+R K+GVM
Sbjct: 1   IDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVM 60

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           FG+PETT GG ALKFYS+VRL++RR   +K  + I GN+T+VKVVKNK+A PF+  E DI
Sbjct: 61  FGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDI 120

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           MYGEGIS  GE++D+  +  IV KSGAW+S
Sbjct: 121 MYGEGISREGEILDMASELDIVQKSGAWYS 150


>gi|117940185|gb|ABK58220.1| recombinase A [Burkholderia thailandensis]
          Length = 129

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 90/130 (69%), Positives = 108/130 (83%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRLGD-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEI D LVRS
Sbjct: 60  TLQVVAEMQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEIVDALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVI S
Sbjct: 120 GSIDMIVIAS 129


>gi|331088905|ref|ZP_08337814.1| RecA protein [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330406503|gb|EGG86011.1| RecA protein [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 334

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 88/332 (26%), Positives = 162/332 (48%), Gaps = 22/332 (6%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           ++  ++++ + Y K  I++   + S  + IE +   S  ++  L  GG P GR++E+ G 
Sbjct: 4   IDNLIAEVNKKY-KTEIIR---KASDLKSIEFIPYTSPCMNY-LTRGGVPVGRMLELVGL 58

Query: 76  ESSGKTTLALHTIAQSQKT-GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG--EQ 132
             SGKTT AL  IA  QK       ++DAE+ LD  +   LGV+  ++++ QP++   EQ
Sbjct: 59  PQSGKTTTALDVIANYQKKYDRYVVYLDAENTLDKEWGSTLGVNWDSVILIQPESEYGEQ 118

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
            L++    VRSG V ++V+DSV  + P++  +  + E   G  + L+     K+     +
Sbjct: 119 LLDMLLDYVRSGKVGLMVLDSVPFIQPKSTCDKALDEKTYGGNSALIKAFCDKVVPLCKK 178

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT------ 246
            +C  + +NQ+R  IG  +   +   G  AL    S  L   +   + DK +        
Sbjct: 179 HECTFLALNQLRENIGNPYKPYKIPCGT-ALAHACSQILWFTKGSLLDDKGNEVSGNYAT 237

Query: 247 --GNQTRVKVVKNKMASPFKQ-VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK- 302
             GN   VK+ KNK+    ++   + + Y  G+    +++D+G+   ++ +SGAWF  K 
Sbjct: 238 PSGNLVSVKMEKNKVTKNDRRLGTYTLNYYSGVDEIKDILDMGILLGVIVQSGAWFRAKL 297

Query: 303 ---GQRLGQGRENSKIFLRENIEIAENIESLL 331
               ++  QG+   + F   ++E  E +   +
Sbjct: 298 KDGTEKKMQGKGGVQDFYYNDLEELEYLREQV 329


>gi|71089120|gb|AAZ23638.1| RecA [uncultured Burkholderia sp.]
 gi|71089122|gb|AAZ23639.1| RecA [uncultured Burkholderia sp.]
 gi|71089126|gb|AAZ23641.1| RecA [uncultured Burkholderia sp.]
          Length = 129

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 90/130 (69%), Positives = 109/130 (83%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG++M+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSVMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  +A+ QK GGT AF+DAEHALD  YA KLGVD+  LL+SQPDTGEQALEI D LVRS
Sbjct: 60  TLQVVAEMQKLGGTAAFIDAEHALDIQYAAKLGVDVSELLVSQPDTGEQALEIADALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|229162715|ref|ZP_04290672.1| hypothetical protein bcere0009_34850 [Bacillus cereus R309803]
 gi|228620597|gb|EEK77466.1| hypothetical protein bcere0009_34850 [Bacillus cereus R309803]
          Length = 141

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 74/141 (52%), Positives = 100/141 (70%)

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
            PETT GG ALKFYS+VRL++RR   +K  + I GN+T+VKVVKNK+A PF+  E DIMY
Sbjct: 1   MPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMY 60

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           GEGIS  GE++D+  +  IV KSGAW+S+  +RLGQGRENSK FL+EN ++ E I   +R
Sbjct: 61  GEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFVR 120

Query: 333 QNAGLVADSLLQEPAINTKDD 353
            + G+  DS +++   +   D
Sbjct: 121 DHHGIGEDSGVEDTEDSNLQD 141


>gi|6694811|gb|AAF25396.1|AF214749_1 RecA protein [Micrococcus sp. SMCC ZAT351]
          Length = 164

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 110/164 (67%), Positives = 137/164 (83%)

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            +A  Q+ GG  AF+DAEHALD +YA+KLGVD+ NLL+SQPDTGEQALEI DMLV SG++
Sbjct: 1   AVASVQRAGGIAAFIDAEHALDPVYAQKLGVDIDNLLVSQPDTGEQALEIMDMLVGSGSI 60

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           DI+V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T  +S S    +FINQ+R K
Sbjct: 61  DIVVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGRLSNSNTTAIFINQLREK 120

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           IGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  GN+T
Sbjct: 121 IGVMFGSPETTTGGKALKFYASVRVDVRRIETLKDGANPVGNRT 164


>gi|229031409|ref|ZP_04187410.1| hypothetical protein bcere0028_34630 [Bacillus cereus AH1271]
 gi|228729904|gb|EEL80883.1| hypothetical protein bcere0028_34630 [Bacillus cereus AH1271]
          Length = 141

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 74/141 (52%), Positives = 100/141 (70%)

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
            PETT GG ALKFYS+VRL++RR   +K  + I GN+T+VKVVKNK+A PF+  E DIMY
Sbjct: 1   MPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMY 60

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           GEGIS  GE++D+  +  IV KSGAW+S+  +RLGQGRENSK FL+EN ++ E I   +R
Sbjct: 61  GEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFVR 120

Query: 333 QNAGLVADSLLQEPAINTKDD 353
            + G+  DS +++   +   D
Sbjct: 121 DHHGIGEDSGVEDAEDSNLQD 141


>gi|255686544|gb|ACU28761.1| recombination protein A [Yersinia pestis]
          Length = 140

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 103/140 (73%), Positives = 119/140 (85%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHA
Sbjct: 1   TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG+
Sbjct: 61  LDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKL 186
           +G+S  G+ AR+MSQA RKL
Sbjct: 121 IGDSHMGLAARMMSQAKRKL 140


>gi|71089172|gb|AAZ23664.1| RecA [uncultured Burkholderia sp.]
 gi|71089176|gb|AAZ23666.1| RecA [uncultured Burkholderia sp.]
          Length = 129

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 92/130 (70%), Positives = 111/130 (85%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA+KLGV+ ++LLISQPDTGEQALEI D LVRS
Sbjct: 60  TLQVIAEMQKLGGTAAFIDAEHALDVQYAQKLGVNAQDLLISQPDTGEQALEIADALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|301601064|dbj|BAJ13221.1| RecA [Agrobacterium vitis]
          Length = 160

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 122/141 (86%), Positives = 133/141 (94%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +Y
Sbjct: 20  SLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGVCAFVDAEHALDPVY 79

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           ARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTP+AEIEG+MG+SL
Sbjct: 80  ARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPKAEIEGEMGDSL 139

Query: 172 PGMQARLMSQALRKLTSSISR 192
           PGMQARLMSQALRKLT SISR
Sbjct: 140 PGMQARLMSQALRKLTGSISR 160


>gi|71089136|gb|AAZ23646.1| RecA [uncultured Burkholderia sp.]
          Length = 129

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 88/130 (67%), Positives = 110/130 (84%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG++M+LG+     E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSVMRLGT-SEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  +A+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LVRS
Sbjct: 60  TLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|238909168|ref|YP_002939635.1| recombination protein RecA [Eubacterium eligens ATCC 27750]
 gi|238873405|gb|ACR73114.1| recombination protein RecA [Eubacterium eligens ATCC 27750]
          Length = 336

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 88/336 (26%), Positives = 160/336 (47%), Gaps = 23/336 (6%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           ++  ++++ + Y K  I++   + S  +GIE +   S  ++  L  GG P GRI+E+ G 
Sbjct: 4   IDNLIAEVNKKY-KTDIIR---KASDLKGIEFIPYTSPMMNY-LTRGGVPVGRIIELVGL 58

Query: 76  ESSGKTTLALHTIAQSQ--KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG--E 131
             SGKTT AL  I+  Q   T   C ++DAE+ +D  +   LGVD   +++ QP++   E
Sbjct: 59  PQSGKTTTALDIISNFQKKYTDKYCVYLDAENTIDKEWGETLGVDWSKVILIQPESEYGE 118

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           + L++    +RSG + + V+DS   + P+A  E  + E   G  + LM     K      
Sbjct: 119 ELLDMLLDYIRSGKIGLAVLDSAPFIIPKAVQEKGLDEKSYGGNSALMKAFCDKAVPLCK 178

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--------D 243
           + +C  + INQ+R  IG  +   +   G  A+    S  L   +   + +K         
Sbjct: 179 KVECTFLLINQLRENIGNPYKPFKIPCGT-AIAHACSQILWFTKGSLLDEKYKEVSSGYA 237

Query: 244 SITGNQTRVKVVKNKMASPFKQVE-FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF- 301
           + +GN   VKV KNK+    ++++ + + Y  G+    + +DL +   I+ ++GAWF   
Sbjct: 238 NPSGNLVSVKVEKNKVTKNDRRLQTYTLNYSTGVDEIKDTLDLAIMLGIISQAGAWFKAI 297

Query: 302 ---KGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
                ++  QG    + F   ++E  E +   + + 
Sbjct: 298 LKDGKEQKMQGFNGVQEFYYNDLEELEYLRKQVYEA 333


>gi|71089164|gb|AAZ23660.1| RecA [uncultured Burkholderia sp.]
          Length = 129

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 92/130 (70%), Positives = 111/130 (85%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA+KLGV+++ LLISQPDTGEQALEI D LVRS
Sbjct: 60  TLQVIAEMQKVGGTAAFIDAEHALDVQYAQKLGVNIQELLISQPDTGEQALEIADALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|229174444|ref|ZP_04301976.1| hypothetical protein bcere0006_35370 [Bacillus cereus MM3]
 gi|228609004|gb|EEK66294.1| hypothetical protein bcere0006_35370 [Bacillus cereus MM3]
          Length = 141

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 75/141 (53%), Positives = 99/141 (70%)

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
            PETT GG ALKFYS+VRL++RR   +K  + I GN+T+VKVVKNK+A PF+  E DIMY
Sbjct: 1   MPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMY 60

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           GEGIS  GE++D+  +  IV KSGAW+S+  +RLGQGRENSK FL+EN ++ E I   +R
Sbjct: 61  GEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFVR 120

Query: 333 QNAGLVADSLLQEPAINTKDD 353
            + G+  DS  +E   +   D
Sbjct: 121 DHHGIGEDSGAEETEDSNLQD 141


>gi|52141709|ref|YP_085120.1| recA protein (recombinase A), C-terminal region [Bacillus cereus
           E33L]
 gi|65321105|ref|ZP_00394064.1| COG0468: RecA/RadA recombinase [Bacillus anthracis str. A2012]
 gi|167635863|ref|ZP_02394172.1| RecA domain protein [Bacillus anthracis str. A0442]
 gi|167639875|ref|ZP_02398144.1| recA protein, group I intron-containing [Bacillus anthracis str.
           A0193]
 gi|170687912|ref|ZP_02879126.1| recA protein, group I intron-containing [Bacillus anthracis str.
           A0465]
 gi|170706853|ref|ZP_02897311.1| recA protein, group I intron-containing [Bacillus anthracis str.
           A0389]
 gi|177652124|ref|ZP_02934670.1| recA protein, group I intron-containing [Bacillus anthracis str.
           A0174]
 gi|196034096|ref|ZP_03101506.1| recA protein, group I intron-containing [Bacillus cereus W]
 gi|218904907|ref|YP_002452741.1| recA protein, group I intron-containing [Bacillus cereus AH820]
 gi|227813313|ref|YP_002813322.1| recA protein, group I intron-containing [Bacillus anthracis str.
           CDC 684]
 gi|228916417|ref|ZP_04079984.1| hypothetical protein bthur0012_36320 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228928829|ref|ZP_04091861.1| hypothetical protein bthur0010_35210 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228935076|ref|ZP_04097906.1| hypothetical protein bthur0009_35300 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228947500|ref|ZP_04109790.1| hypothetical protein bthur0007_36280 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228986923|ref|ZP_04147050.1| hypothetical protein bthur0001_35980 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229092817|ref|ZP_04223955.1| hypothetical protein bcere0021_35680 [Bacillus cereus Rock3-42]
 gi|229123293|ref|ZP_04252497.1| hypothetical protein bcere0016_35820 [Bacillus cereus 95/8201]
 gi|229602786|ref|YP_002868021.1| recA protein, group I intron-containing [Bacillus anthracis str.
           A0248]
 gi|254683512|ref|ZP_05147372.1| recombinase A [Bacillus anthracis str. CNEVA-9066]
 gi|254722033|ref|ZP_05183822.1| recombinase A [Bacillus anthracis str. A1055]
 gi|254735819|ref|ZP_05193525.1| recombinase A [Bacillus anthracis str. Western North America
           USA6153]
 gi|254739655|ref|ZP_05197349.1| recombinase A [Bacillus anthracis str. Kruger B]
 gi|254751051|ref|ZP_05203090.1| recombinase A [Bacillus anthracis str. Vollum]
 gi|254759369|ref|ZP_05211394.1| recombinase A [Bacillus anthracis str. Australia 94]
 gi|301055269|ref|YP_003793480.1| RecA protein, C-terminal region [Bacillus anthracis CI]
 gi|51975178|gb|AAU16728.1| recA protein (recombinase A), C-terminal region [Bacillus cereus
           E33L]
 gi|167512276|gb|EDR87653.1| recA protein, group I intron-containing [Bacillus anthracis str.
           A0193]
 gi|167528820|gb|EDR91578.1| RecA domain protein [Bacillus anthracis str. A0442]
 gi|170128271|gb|EDS97140.1| recA protein, group I intron-containing [Bacillus anthracis str.
           A0389]
 gi|170668228|gb|EDT18977.1| recA protein, group I intron-containing [Bacillus anthracis str.
           A0465]
 gi|172082493|gb|EDT67558.1| recA protein, group I intron-containing [Bacillus anthracis str.
           A0174]
 gi|195993170|gb|EDX57128.1| recA protein, group I intron-containing [Bacillus cereus W]
 gi|218534896|gb|ACK87294.1| recA protein, group I intron-containing [Bacillus cereus AH820]
 gi|227006565|gb|ACP16308.1| protein RecA, group I intron-containing [Bacillus anthracis str.
           CDC 684]
 gi|228660069|gb|EEL15705.1| hypothetical protein bcere0016_35820 [Bacillus cereus 95/8201]
 gi|228690615|gb|EEL44396.1| hypothetical protein bcere0021_35680 [Bacillus cereus Rock3-42]
 gi|228772872|gb|EEM21311.1| hypothetical protein bthur0001_35980 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228812020|gb|EEM58351.1| hypothetical protein bthur0007_36280 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228824646|gb|EEM70448.1| hypothetical protein bthur0009_35300 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228830636|gb|EEM76241.1| hypothetical protein bthur0010_35210 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228843220|gb|EEM88301.1| hypothetical protein bthur0012_36320 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229267194|gb|ACQ48831.1| recA protein, group I intron-containing [Bacillus anthracis str.
           A0248]
 gi|300377438|gb|ADK06342.1| RecA protein, C-terminal region [Bacillus cereus biovar anthracis
           str. CI]
          Length = 141

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 73/129 (56%), Positives = 96/129 (74%)

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
            PETT GG ALKFYS+VRL++RR   +K  + I GN+T+VKVVKNK+A PF+  E DIMY
Sbjct: 1   MPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMY 60

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           GEGIS  GE++D+  +  IV KSGAW+S+  +RLGQGRENSK FL+EN ++ E I   +R
Sbjct: 61  GEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFIR 120

Query: 333 QNAGLVADS 341
           ++ G+  DS
Sbjct: 121 EHHGISEDS 129


>gi|110433539|gb|ABG74441.1| RecA [Rickettsia rhipicephali]
          Length = 160

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 119/160 (74%), Positives = 141/160 (88%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            PKGRI+EI+GPESSGKTTL LH IA++QK  GTCAF+DAEHALD  YA+KLGV++  L+
Sbjct: 1   VPKGRIIEIFGPESSGKTTLTLHLIAEAQKKDGTCAFIDAEHALDPAYAKKLGVNIDELI 60

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           ISQPDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++    QARLMSQAL
Sbjct: 61  ISQPDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQAL 120

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           RKLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 121 RKLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNAL 160


>gi|5923998|emb|CAB56531.1| RecA protein [Frankia sp. HR401]
          Length = 164

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 111/164 (67%), Positives = 134/164 (81%)

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            +A +Q  GG  AF+DAEHALD  YA KLGVD   LL+SQPDTGEQALEI DML+RSGA+
Sbjct: 1   AVANAQAAGGIAAFIDAEHALDPEYAGKLGVDTDALLVSQPDTGEQALEIADMLIRSGAL 60

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T +++ S    +FINQ+R K
Sbjct: 61  DVIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGALANSGTTAIFINQLREK 120

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           +GVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+T
Sbjct: 121 VGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTEAVGNRT 164


>gi|7105877|emb|CAB75958.1| RecA protein [Frankia sp. ORS020606]
          Length = 169

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 113/167 (67%), Positives = 135/167 (80%)

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
                 ++ +TGG  AF+DAEHALD  YA KLGVD   LL+SQPDTGEQALEI DMLVRS
Sbjct: 3   CTSVAERAGRTGGIAAFIDAEHALDPEYAGKLGVDTDGLLVSQPDTGEQALEIADMLVRS 62

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GA+DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T++++ S    +FINQ+
Sbjct: 63  GALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTAALANSGTTAIFINQL 122

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
           R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD     GN+T
Sbjct: 123 REKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTEAVGNRT 169


>gi|296040840|gb|ADG85387.1| recombination protein A [Yersinia massiliensis]
 gi|296040842|gb|ADG85388.1| recombination protein A [Yersinia massiliensis]
 gi|296040846|gb|ADG85390.1| recombination protein A [Yersinia massiliensis]
          Length = 139

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 102/139 (73%), Positives = 119/139 (85%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHA
Sbjct: 1   TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG+
Sbjct: 61  LDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRK 185
           +G+S  G+ AR+MSQA+RK
Sbjct: 121 IGDSHMGLAARMMSQAMRK 139


>gi|264668508|gb|ACY71633.1| recombinase protein A [Rhizobium giardinii]
          Length = 132

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 112/131 (85%), Positives = 123/131 (93%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHA
Sbjct: 1   TVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIEG+
Sbjct: 61  LDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGE 120

Query: 167 MGESLPGMQAR 177
           MG+SLPG+QAR
Sbjct: 121 MGDSLPGLQAR 131


>gi|213389252|gb|ACJ45761.1| RecA [Burkholderia sp. SIB012]
 gi|213389256|gb|ACJ45763.1| RecA [Burkholderia sp. SIB014]
          Length = 129

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 92/130 (70%), Positives = 110/130 (84%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|213389238|gb|ACJ45754.1| RecA [Burkholderia sp. ZM005]
 gi|213389268|gb|ACJ45769.1| RecA [Burkholderia sp. ZMB007-2]
          Length = 129

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 92/130 (70%), Positives = 109/130 (83%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
            + +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   DKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|10444900|gb|AAG16497.1| RecA [Helicobacter pylori]
 gi|10444910|gb|AAG16502.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 110/174 (63%), Positives = 140/174 (80%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120

Query: 205 MKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKI    +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+ + KVVKN
Sbjct: 121 MKIGMTGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKN 174


>gi|296040844|gb|ADG85389.1| recombination protein A [Yersinia massiliensis]
          Length = 139

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 102/139 (73%), Positives = 119/139 (85%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHA
Sbjct: 1   TISTGSLPLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG+
Sbjct: 61  LDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRK 185
           +G+S  G+ AR+MSQA+RK
Sbjct: 121 IGDSHMGLAARMMSQAMRK 139


>gi|213389266|gb|ACJ45768.1| RecA [Burkholderia sp. VSB003]
          Length = 129

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 93/130 (71%), Positives = 110/130 (84%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
            + +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   DKQFGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDS 153
           G+VD+IVIDS
Sbjct: 120 GSVDMIVIDS 129


>gi|71089102|gb|AAZ23629.1| RecA [uncultured Burkholderia sp.]
 gi|71089110|gb|AAZ23633.1| RecA [uncultured Burkholderia sp.]
 gi|71089112|gb|AAZ23634.1| RecA [uncultured Burkholderia sp.]
 gi|71089116|gb|AAZ23636.1| RecA [uncultured Burkholderia sp.]
 gi|71089130|gb|AAZ23643.1| RecA [uncultured Burkholderia sp.]
 gi|71089134|gb|AAZ23645.1| RecA [uncultured Burkholderia sp.]
 gi|71089138|gb|AAZ23647.1| RecA [uncultured Burkholderia sp.]
 gi|71089140|gb|AAZ23648.1| RecA [uncultured Burkholderia sp.]
          Length = 129

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 89/130 (68%), Positives = 110/130 (84%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG++M+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSVMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  +A+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LVRS
Sbjct: 60  TLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|10444844|gb|AAG16469.1| RecA [Helicobacter pylori]
 gi|10444848|gb|AAG16471.1| RecA [Helicobacter pylori]
 gi|10444928|gb|AAG16511.1| RecA [Helicobacter pylori]
 gi|10444934|gb|AAG16514.1| RecA [Helicobacter pylori]
 gi|10444936|gb|AAG16515.1| RecA [Helicobacter pylori]
 gi|10444978|gb|AAG16536.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 113/174 (64%), Positives = 143/174 (82%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTQNLLVSQPDTGEQALEILETITRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120

Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ S+K  +   GN+ + KVVKN
Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIASLKQNEQHIGNRAKAKVVKN 174


>gi|145386833|gb|ABP65278.1| recombinase A [Burkholderia vietnamiensis]
          Length = 128

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 92/129 (71%), Positives = 110/129 (85%), Gaps = 1/129 (0%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           + +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL 
Sbjct: 1   KQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLT 59

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG
Sbjct: 60  LQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSG 119

Query: 145 AVDIIVIDS 153
           ++D+IVIDS
Sbjct: 120 SIDMIVIDS 128


>gi|157168634|gb|ABV25705.1| recombinase A [Pectobacterium atrosepticum]
          Length = 162

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 117/161 (72%), Positives = 141/161 (87%)

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           IVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPD
Sbjct: 1   IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPD 60

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           TGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  
Sbjct: 61  TGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 120

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           ++ ++  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SV
Sbjct: 121 NLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASV 161


>gi|49478369|ref|YP_037840.1| recA protein (recombinase A), C-terminal region [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|49329925|gb|AAT60571.1| recA protein (recombinase A), C-terminal region [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 141

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 73/129 (56%), Positives = 96/129 (74%)

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
            PETT GG ALKFYS+VRL++RR   +K  + I GN+T+VKVVKNK+A PF+  E DIMY
Sbjct: 1   MPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMY 60

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332
           GEGIS  GE++D+  +  IV KSGAW+S+  +RLGQGRENSK FL+EN ++ E I   +R
Sbjct: 61  GEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFIR 120

Query: 333 QNAGLVADS 341
           ++ G+  DS
Sbjct: 121 EHHGISEDS 129


>gi|10444958|gb|AAG16526.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 113/174 (64%), Positives = 143/174 (82%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTQNLLVSQPDTGEQALEILETITRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    LVFINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIR 120

Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+ + KVVKN
Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIATLKQNEQHIGNRAKAKVVKN 174


>gi|10444918|gb|AAG16506.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 114/174 (65%), Positives = 143/174 (82%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTQNLLVSQPDTGEQALEILETITRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    LVFINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIR 120

Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ S+K  +   GN+ + KVVKN
Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIASLKQNEQHIGNRAKAKVVKN 174


>gi|291246138|gb|ADD85193.1| RecA [Borrelia recurrentis]
          Length = 173

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 114/170 (67%), Positives = 147/170 (86%)

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEI+GPESSGKTTL L  IA+ QKTGG  AF+DAEHALD +YAR LGV++  L +SQPDT
Sbjct: 1   VEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQPDT 60

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GEQAL+I + L+RSG VD+IV+DSVAAL P+AEI+G+MG++  G+QARLMS+ALRK+T+ 
Sbjct: 61  GEQALDIAEYLIRSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGLQARLMSKALRKITAI 120

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           +S+S   ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V  +
Sbjct: 121 LSKSNACIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKVEQV 170


>gi|10444880|gb|AAG16487.1| RecA [Helicobacter pylori]
 gi|10444940|gb|AAG16517.1| RecA [Helicobacter pylori]
 gi|10444956|gb|AAG16525.1| RecA [Helicobacter pylori]
 gi|10444966|gb|AAG16530.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 112/174 (64%), Positives = 143/174 (82%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTQNLLVSQPDTGEQALEILETITRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120

Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+ + KVVKN
Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKN 174


>gi|71089152|gb|AAZ23654.1| RecA [uncultured Burkholderia sp.]
          Length = 129

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 89/130 (68%), Positives = 109/130 (83%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG++M+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSVMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LL+SQPDTGEQALEI D LVRS
Sbjct: 60  TLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNELLVSQPDTGEQALEIADALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|68635392|emb|CAF21753.1| recombinase A [Lactobacillus casei]
          Length = 158

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 94/199 (47%), Positives = 127/199 (63%), Gaps = 42/199 (21%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +  +SSGSL +D  LG+GG P+GRIVE+YGPESSG+TT+ALH +A  Q+ GGT A++DAE
Sbjct: 2   VSAISSGSLAIDEVLGVGGLPRGRIVEMYGPESSGETTVALHAVAMVQQHGGTAAYIDAE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +A+D  Y                                            AL P+AEI+
Sbjct: 62  NAMDPKY------------------------------------------ATALVPQAEID 79

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           GDMG++  G+QARLMSQALRKL+ +IS++K I VFINQ+R K+G++FG+PE T GG ALK
Sbjct: 80  GDMGDAHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGIVFGNPEITPGGRALK 139

Query: 225 FYSSVRLDIRRVGSIKDKD 243
           FY++VRL+IRR   +K+  
Sbjct: 140 FYATVRLEIRRSEQVKNGA 158


>gi|10444842|gb|AAG16468.1| RecA [Helicobacter pylori]
 gi|10444866|gb|AAG16480.1| RecA [Helicobacter pylori]
 gi|10444878|gb|AAG16486.1| RecA [Helicobacter pylori]
 gi|10444926|gb|AAG16510.1| RecA [Helicobacter pylori]
 gi|10444946|gb|AAG16520.1| RecA [Helicobacter pylori]
 gi|10444968|gb|AAG16531.1| RecA [Helicobacter pylori]
 gi|10444970|gb|AAG16532.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 113/174 (64%), Positives = 143/174 (82%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120

Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ S+K  +   GN+ + KVVKN
Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIASLKQNEQHIGNRAKAKVVKN 174


>gi|6694818|gb|AAF25403.1|AF214756_1 RecA protein [Arthrobacter sp. 'SMCC ZAT031']
          Length = 164

 Score =  146 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 110/163 (67%), Positives = 138/163 (84%)

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTT+ALH +A +Q+ GG  AF+DAEHALD  YA++LGVD   LL+SQPDTGEQALEI DM
Sbjct: 1   KTTVALHAVASAQRNGGIAAFIDAEHALDPEYAKRLGVDTDALLVSQPDTGEQALEIMDM 60

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           LV SG++DI+VIDSVAAL PRAEIEG+MG+S  G+QARLM+QALRK+T  +S++K   +F
Sbjct: 61  LVGSGSIDIVVIDSVAALVPRAEIEGEMGDSHVGLQARLMTQALRKITGRLSQTKTTAIF 120

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           INQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+ 
Sbjct: 121 INQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKEG 163


>gi|10121206|gb|AAG13115.1|AF143800_1 RecA [Burkholderia cepacia]
          Length = 138

 Score =  146 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 107/137 (78%), Positives = 123/137 (89%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAE
Sbjct: 1   IQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIE
Sbjct: 61  HALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQ 181
           G+MG+SLPG+QARLMSQ
Sbjct: 121 GEMGDSLPGLQARLMSQ 137


>gi|10121210|gb|AAG13117.1|AF143802_1 RecA [Burkholderia cepacia]
          Length = 138

 Score =  146 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 106/137 (77%), Positives = 123/137 (89%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGT AF+DAE
Sbjct: 1   IQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAELQKLGGTAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIE
Sbjct: 61  HALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQ 181
           G+MG+SLPG+QARLMSQ
Sbjct: 121 GEMGDSLPGLQARLMSQ 137


>gi|255686540|gb|ACU28759.1| recombination protein A [Yersinia enterocolitica]
          Length = 140

 Score =  146 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 102/140 (72%), Positives = 119/140 (85%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+GSL LDIALG G  P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHA
Sbjct: 1   TISTGSLSLDIALGAGALPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG+
Sbjct: 61  LDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGE 120

Query: 167 MGESLPGMQARLMSQALRKL 186
           +G+S  G+ AR+MSQA+RKL
Sbjct: 121 IGDSHMGLAARMMSQAMRKL 140


>gi|213389254|gb|ACJ45762.1| RecA [Burkholderia sp. SIB013]
          Length = 129

 Score =  146 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 92/130 (70%), Positives = 110/130 (84%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
            + +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   DKQFGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|71089118|gb|AAZ23637.1| RecA [uncultured Burkholderia sp.]
          Length = 129

 Score =  146 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 90/130 (69%), Positives = 109/130 (83%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG++M+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSVMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGRPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  +A+ QK GGT AF+DAEHALD  YA KLGVD+  LL+SQPDTGEQALEI D LVRS
Sbjct: 60  TLQVVAEMQKLGGTAAFIDAEHALDIQYAAKLGVDVSELLVSQPDTGEQALEIADALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|10121202|gb|AAG13113.1|AF143798_1 RecA [Burkholderia vietnamiensis]
 gi|10121204|gb|AAG13114.1|AF143799_1 RecA [Burkholderia vietnamiensis]
          Length = 138

 Score =  146 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 107/137 (78%), Positives = 123/137 (89%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAE
Sbjct: 1   IQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIE
Sbjct: 61  HALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQ 181
           G+MG+SLPG+QARLMSQ
Sbjct: 121 GEMGDSLPGLQARLMSQ 137


>gi|71089168|gb|AAZ23662.1| RecA [uncultured Burkholderia sp.]
          Length = 128

 Score =  146 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 91/129 (70%), Positives = 110/129 (85%), Gaps = 1/129 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA+KLGV+ ++LLISQPDTGEQALEI D LVRS
Sbjct: 60  TLQVIAEMQKLGGTAAFIDAEHALDVQYAQKLGVNAQDLLISQPDTGEQALEIADALVRS 119

Query: 144 GAVDIIVID 152
           G++D+IVID
Sbjct: 120 GSIDMIVID 128


>gi|199601688|dbj|BAG70953.1| RecA protein [Agrobacterium tumefaciens]
          Length = 136

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 110/132 (83%), Positives = 123/132 (93%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDA
Sbjct: 5   EVETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGVCAFVDA 64

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTP+AEI
Sbjct: 65  EHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPKAEI 124

Query: 164 EGDMGESLPGMQ 175
           EG+MG+SLPGMQ
Sbjct: 125 EGEMGDSLPGMQ 136


>gi|213389242|gb|ACJ45756.1| RecA [Burkholderia sp. ZM010]
          Length = 129

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 91/130 (70%), Positives = 109/130 (83%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
            + +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   DKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALE+TD LVRS
Sbjct: 60  TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEVTDALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|10444904|gb|AAG16499.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 109/174 (62%), Positives = 140/174 (80%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTGEQAL+I + + RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALKILETITRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120

Query: 205 MKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKI    +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+ + KVVKN
Sbjct: 121 MKIGMTGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKN 174


>gi|213389244|gb|ACJ45757.1| RecA [Burkholderia sp. SIB001]
          Length = 129

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 92/130 (70%), Positives = 109/130 (83%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
            + +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   DKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAEPQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|10444860|gb|AAG16477.1| RecA [Helicobacter pylori]
 gi|10444862|gb|AAG16478.1| RecA [Helicobacter pylori]
 gi|10444864|gb|AAG16479.1| RecA [Helicobacter pylori]
 gi|10444868|gb|AAG16481.1| RecA [Helicobacter pylori]
 gi|10444870|gb|AAG16482.1| RecA [Helicobacter pylori]
 gi|10444884|gb|AAG16489.1| RecA [Helicobacter pylori]
 gi|10444888|gb|AAG16491.1| RecA [Helicobacter pylori]
 gi|10444898|gb|AAG16496.1| RecA [Helicobacter pylori]
 gi|10444902|gb|AAG16498.1| RecA [Helicobacter pylori]
 gi|10444920|gb|AAG16507.1| RecA [Helicobacter pylori]
 gi|10444930|gb|AAG16512.1| RecA [Helicobacter pylori]
 gi|10444932|gb|AAG16513.1| RecA [Helicobacter pylori]
 gi|10444964|gb|AAG16529.1| RecA [Helicobacter pylori]
 gi|10444976|gb|AAG16535.1| RecA [Helicobacter pylori]
 gi|10444982|gb|AAG16538.1| RecA [Helicobacter pylori]
 gi|10444990|gb|AAG16542.1| RecA [Helicobacter pylori]
 gi|10444992|gb|AAG16543.1| RecA [Helicobacter pylori]
 gi|10444994|gb|AAG16544.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 112/174 (64%), Positives = 143/174 (82%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120

Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+ + KVVKN
Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKN 174


>gi|10444886|gb|AAG16490.1| RecA [Helicobacter pylori]
 gi|10444890|gb|AAG16492.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 114/174 (65%), Positives = 143/174 (82%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    LVFINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIR 120

Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ S+K  +   GN+ + KVVKN
Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIASLKQNEQHIGNRAKAKVVKN 174


>gi|71089170|gb|AAZ23663.1| RecA [uncultured Burkholderia sp.]
          Length = 128

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 92/129 (71%), Positives = 110/129 (85%), Gaps = 1/129 (0%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           + +GKG+IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL 
Sbjct: 1   KQFGKGSIMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLT 59

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA+ QK GGT AF+DAEHALD  YA+KLGV+ ++LLISQPDTGEQALEI D LVRSG
Sbjct: 60  LQVIAEMQKLGGTAAFIDAEHALDVQYAQKLGVNAQDLLISQPDTGEQALEIADALVRSG 119

Query: 145 AVDIIVIDS 153
           ++D+IVIDS
Sbjct: 120 SIDMIVIDS 128


>gi|71089174|gb|AAZ23665.1| RecA [uncultured Burkholderia sp.]
          Length = 129

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 90/130 (69%), Positives = 110/130 (84%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+  K GGT AF+DAEHALD  YA+KLGV+ ++LLISQPD+GEQALEI D LVRS
Sbjct: 60  TLQVIAEMHKLGGTAAFIDAEHALDVQYAQKLGVNAQDLLISQPDSGEQALEIADALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|10444922|gb|AAG16508.1| RecA [Helicobacter pylori]
 gi|10444948|gb|AAG16521.1| RecA [Helicobacter pylori]
 gi|10444960|gb|AAG16527.1| RecA [Helicobacter pylori]
 gi|10444984|gb|AAG16539.1| RecA [Helicobacter pylori]
 gi|10444986|gb|AAG16540.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 108/174 (62%), Positives = 139/174 (79%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120

Query: 205 MKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKI    +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+ + KVVKN
Sbjct: 121 MKIGMTGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKN 174


>gi|10444854|gb|AAG16474.1| RecA [Helicobacter pylori]
 gi|10444906|gb|AAG16500.1| RecA [Helicobacter pylori]
 gi|10444908|gb|AAG16501.1| RecA [Helicobacter pylori]
 gi|10444942|gb|AAG16518.1| RecA [Helicobacter pylori]
 gi|10444944|gb|AAG16519.1| RecA [Helicobacter pylori]
 gi|10444972|gb|AAG16533.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 113/174 (64%), Positives = 143/174 (82%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    LVFINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIR 120

Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+ + KVVKN
Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKN 174


>gi|264668502|gb|ACY71630.1| recombinase protein A [Sinorhizobium fredii]
          Length = 132

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 112/131 (85%), Positives = 122/131 (93%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHA
Sbjct: 1   TVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+
Sbjct: 61  LDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGE 120

Query: 167 MGESLPGMQAR 177
           MG+SLPGMQAR
Sbjct: 121 MGDSLPGMQAR 131


>gi|180050859|gb|ACB87043.1| RecA [Bacteriovorax sp. JS10]
          Length = 146

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 102/147 (69%), Positives = 122/147 (82%), Gaps = 1/147 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           AIM+L       + I  +S+  LGLD+ALG+GG PKGRI+EIYGPESSGKTTL LH  A+
Sbjct: 1   AIMKL-DSEEKADKIPAISTSCLGLDLALGVGGVPKGRIIEIYGPESSGKTTLTLHIAAE 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+GEQALEITDMLVRSGAVD+++
Sbjct: 60  CQKAGGTVAFIDAEHALDTAYASKLGVDIPNTLISQPDSGEQALEITDMLVRSGAVDLLI 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQAR 177
           +DSVAALTPRAE+EGDMG+S  G+QA+
Sbjct: 120 VDSVAALTPRAELEGDMGDSHMGLQAK 146


>gi|213389248|gb|ACJ45759.1| RecA [Burkholderia sp. SIB006]
 gi|213389250|gb|ACJ45760.1| RecA [Burkholderia sp. SIB011]
 gi|213389258|gb|ACJ45764.1| RecA [Burkholderia sp. VSB006]
          Length = 129

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 92/130 (70%), Positives = 109/130 (83%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
            + +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   DKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|71089114|gb|AAZ23635.1| RecA [uncultured Burkholderia sp.]
          Length = 128

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 88/129 (68%), Positives = 109/129 (84%), Gaps = 1/129 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG++M+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSVMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  +A+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LVRS
Sbjct: 60  TLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVRS 119

Query: 144 GAVDIIVID 152
           G++D+IVID
Sbjct: 120 GSIDMIVID 128


>gi|180050831|gb|ACB87029.1| RecA [Bacteriovorax sp. GSL4A]
          Length = 141

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 96/142 (67%), Positives = 117/142 (82%), Gaps = 1/142 (0%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+L S+    +    +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ 
Sbjct: 1   IMKLDSEKKTRKDT-AISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAEC 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++
Sbjct: 60  QKAGGTVAFIDAEHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIV 119

Query: 152 DSVAALTPRAEIEGDMGESLPG 173
           DSVAALTPRAE+EGDMG+S  G
Sbjct: 120 DSVAALTPRAELEGDMGDSHMG 141


>gi|6694814|gb|AAF25399.1|AF214752_1 RecA protein [Micrococcus sp. SMCC ZAT352]
          Length = 162

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 109/162 (67%), Positives = 135/162 (83%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH +A  Q+ GG  AF+DAEHALD +YA+KLGVD+ NLL+SQPDTGEQALEI DMLV SG
Sbjct: 1   LHAVASVQRAGGIAAFIDAEHALDPVYAQKLGVDIDNLLVSQPDTGEQALEIMDMLVGSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           ++DI+V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRK+T  +S S    +FINQ+R
Sbjct: 61  SIDIVVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGRLSNSNTTAIFINQLR 120

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
            KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD  +  
Sbjct: 121 EKIGVMFGSPETTTGGKALKFYASVRVDVRRIETLKDGANPV 162


>gi|240255480|ref|NP_189781.4| ATP binding / DNA binding / DNA-dependent ATPase/
           nucleoside-triphosphatase/ nucleotide binding
           [Arabidopsis thaliana]
          Length = 226

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 105/212 (49%), Positives = 146/212 (68%), Gaps = 19/212 (8%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M L S+      + V S+GS  LD+ALG+GG PKGR+VEIYGPE+SGKT LALH ++   
Sbjct: 1   MYL-SRAVSPRNVPVFSTGSFALDVALGVGGLPKGRLVEIYGPEASGKTALALHMLSM-- 57

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
                         L    A+ +GV+ +NLL+SQPD G+QAL + D L++SG+VD+IV+D
Sbjct: 58  -------------LLIRSLAKAIGVNTENLLLSQPDCGKQALSLVDTLIQSGSVDVIVVD 104

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL P+ E++G+MG++   +QARLMSQALRK + S+  S+ +L+FINQ+R +     G
Sbjct: 105 SVAALVPKGELDGEMGDAHMAIQARLMSQALRKFSHSLLLSQTLLIFINQVRER---FGG 161

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
             E T+GGNALKFY+ +RLDI+R+G IK  + 
Sbjct: 162 PTEVTSGGNALKFYAPMRLDIKRIGLIKKGEE 193


>gi|10444974|gb|AAG16534.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 109/174 (62%), Positives = 139/174 (79%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    LVFINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIR 120

Query: 205 MKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKI    +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+ + KVVKN
Sbjct: 121 MKIGMTGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKN 174


>gi|71089106|gb|AAZ23631.1| RecA [uncultured Burkholderia sp.]
          Length = 128

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 89/129 (68%), Positives = 109/129 (84%), Gaps = 1/129 (0%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           + +GKG++M+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL 
Sbjct: 1   KQFGKGSVMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLT 59

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  +A+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LVRSG
Sbjct: 60  LQVVAKMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVRSG 119

Query: 145 AVDIIVIDS 153
           ++D+IVIDS
Sbjct: 120 SIDMIVIDS 128


>gi|10444858|gb|AAG16476.1| RecA [Helicobacter pylori]
 gi|10444912|gb|AAG16503.1| RecA [Helicobacter pylori]
 gi|10444952|gb|AAG16523.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 110/174 (63%), Positives = 142/174 (81%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTQNLLVSQPSTGEEALEILETITRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120

Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+ + KVVKN
Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKN 174


>gi|10444892|gb|AAG16493.1| RecA [Helicobacter pylori]
 gi|10444924|gb|AAG16509.1| RecA [Helicobacter pylori]
 gi|10444950|gb|AAG16522.1| RecA [Helicobacter pylori]
 gi|10444954|gb|AAG16524.1| RecA [Helicobacter pylori]
 gi|10444962|gb|AAG16528.1| RecA [Helicobacter pylori]
 gi|10444980|gb|AAG16537.1| RecA [Helicobacter pylori]
 gi|10444996|gb|AAG16545.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 111/174 (63%), Positives = 142/174 (81%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120

Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ S+K  +   GN+ + KVVKN
Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIASLKQNEQHIGNRAKAKVVKN 174


>gi|264668504|gb|ACY71631.1| recombinase protein A [Sinorhizobium meliloti]
          Length = 132

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 112/131 (85%), Positives = 122/131 (93%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDAEHA
Sbjct: 1   TVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHA 60

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+
Sbjct: 61  LDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVIDSVAALVPRAEIEGE 120

Query: 167 MGESLPGMQAR 177
           MG+SLPGMQAR
Sbjct: 121 MGDSLPGMQAR 131


>gi|10121208|gb|AAG13116.1|AF143801_1 RecA [Burkholderia cepacia]
          Length = 138

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 107/137 (78%), Positives = 123/137 (89%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+DAE
Sbjct: 1   IQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIE
Sbjct: 61  HALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIE 120

Query: 165 GDMGESLPGMQARLMSQ 181
           G+MG+SLPG+QARLMSQ
Sbjct: 121 GEMGDSLPGLQARLMSQ 137


>gi|10444914|gb|AAG16504.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 110/174 (63%), Positives = 141/174 (81%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQP TGE+ALEI +   RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETSTRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120

Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+ + KVVKN
Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKN 174


>gi|71089186|gb|AAZ23671.1| RecA [uncultured Burkholderia sp.]
          Length = 129

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 91/130 (70%), Positives = 109/130 (83%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+ G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSIMRTGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVID+
Sbjct: 120 GSIDMIVIDT 129


>gi|2583177|gb|AAB82716.1| RecA [Rhodothermus marinus DSM 4252]
          Length = 119

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 70/112 (62%), Positives = 88/112 (78%), Gaps = 2/112 (1%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           K+KALE A+  I++ YGKGAIM+LG   +I   ++V+ +GSL LD ALG+GG P+GRIVE
Sbjct: 8   KAKALELAVKHIEKQYGKGAIMRLGDAPAI--SVDVIPTGSLALDAALGVGGVPRGRIVE 65

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
           IYGPESSGKTTLALH +A++QK GG CAF+DAEHA D+ YA  LGVDL+   
Sbjct: 66  IYGPESSGKTTLALHIMAEAQKLGGACAFIDAEHAFDARYAANLGVDLQACK 117


>gi|10444846|gb|AAG16470.1| RecA [Helicobacter pylori]
 gi|10444850|gb|AAG16472.1| RecA [Helicobacter pylori]
 gi|10444852|gb|AAG16473.1| RecA [Helicobacter pylori]
 gi|10444856|gb|AAG16475.1| RecA [Helicobacter pylori]
 gi|10444872|gb|AAG16483.1| RecA [Helicobacter pylori]
 gi|10444876|gb|AAG16485.1| RecA [Helicobacter pylori]
 gi|10444882|gb|AAG16488.1| RecA [Helicobacter pylori]
 gi|10444894|gb|AAG16494.1| RecA [Helicobacter pylori]
 gi|10444896|gb|AAG16495.1| RecA [Helicobacter pylori]
 gi|10444938|gb|AAG16516.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 110/174 (63%), Positives = 142/174 (81%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120

Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+ + KVVKN
Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKN 174


>gi|213389260|gb|ACJ45765.1| RecA [Burkholderia sp. VSB012]
          Length = 129

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 91/130 (70%), Positives = 108/130 (83%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
            + +GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   DKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++   LISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPEPLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|6694815|gb|AAF25400.1|AF214753_1 RecA protein [Arthrobacter sp. 'SMCC ZAT277']
          Length = 162

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 107/162 (66%), Positives = 135/162 (83%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           +A +Q+ GG  AF+DAEHALD  YA+KLGVD   LL+SQPDTGEQALEI DML+ SG++D
Sbjct: 1   VASAQRNGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQPDTGEQALEIMDMLIGSGSID 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           I+VIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T  +S++K   +FINQ+R KI
Sbjct: 61  IVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKI 120

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249
           GV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+  +  GN+
Sbjct: 121 GVFFGSPETTTGGKALKFYASVRIDVRRIETLKEGVNPVGNR 162


>gi|71089148|gb|AAZ23652.1| RecA [uncultured Burkholderia sp.]
          Length = 128

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 87/129 (67%), Positives = 106/129 (82%), Gaps = 1/129 (0%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           + +GKG++M+LG  G   E I VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL 
Sbjct: 1   KQFGKGSVMRLG-AGEAVEDIPVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLT 59

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LL+SQPDTGEQALEI D L+RS 
Sbjct: 60  LQVVAEMQKLGGTAAFIDAEHALDFQYAGKLGVNVNELLVSQPDTGEQALEIADALLRSV 119

Query: 145 AVDIIVIDS 153
           ++D+IVIDS
Sbjct: 120 SIDMIVIDS 128


>gi|10444916|gb|AAG16505.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 111/174 (63%), Positives = 142/174 (81%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    LVFINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIR 120

Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+ + KVVKN
Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKN 174


>gi|300521198|gb|ADK25818.1| RecA [Vibrio vulnificus]
 gi|300521200|gb|ADK25819.1| RecA [Vibrio vulnificus]
 gi|300521202|gb|ADK25820.1| RecA [Vibrio vulnificus]
 gi|300521204|gb|ADK25821.1| RecA [Vibrio vulnificus]
 gi|300521208|gb|ADK25823.1| RecA [Vibrio vulnificus]
 gi|300521210|gb|ADK25824.1| RecA [Vibrio vulnificus]
 gi|300521212|gb|ADK25825.1| RecA [Vibrio vulnificus]
 gi|300521214|gb|ADK25826.1| RecA [Vibrio vulnificus]
 gi|300521216|gb|ADK25827.1| RecA [Vibrio vulnificus]
 gi|300521218|gb|ADK25828.1| RecA [Vibrio vulnificus]
          Length = 148

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 104/148 (70%), Positives = 128/148 (86%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P GRIVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  
Sbjct: 1   GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDQ 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 61  LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGV 209
           A+RKLT ++ +S C+ +FINQ+RMKIGV
Sbjct: 121 AMRKLTGNLKQSNCMCIFINQIRMKIGV 148


>gi|10444988|gb|AAG16541.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 111/174 (63%), Positives = 142/174 (81%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120

Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKIG+M +GSPETTTGGNALKFY+SVR+DI R+ ++K  +   GN+ + KVVKN
Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDITRIAALKQNEQHIGNRAKAKVVKN 174


>gi|71089166|gb|AAZ23661.1| RecA [uncultured Burkholderia sp.]
          Length = 129

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 90/130 (69%), Positives = 111/130 (85%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG+IM+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGP+SSGKTTL
Sbjct: 1   EKQFGKGSIMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPKSSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DA+HALD  YA+KLGV+ ++LLISQPDTGEQALEI D LVRS
Sbjct: 60  TLQVIAEIQKLGGTAAFIDAKHALDVQYAQKLGVNAQDLLISQPDTGEQALEIADALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|213389234|gb|ACJ45752.1| RecA [Burkholderia sp. ZYB002]
          Length = 129

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 91/130 (70%), Positives = 108/130 (83%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
            + +GKG+IM++G  G   E I+VVS+G LGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   DKQFGKGSIMRMGD-GEAAEDIQVVSTGPLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  TLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|180050819|gb|ACB87023.1| RecA [Bacteriovorax sp. ORF]
          Length = 142

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 94/137 (68%), Positives = 113/137 (82%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
                 E +  +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ QK GG
Sbjct: 5   DSEKKLEKVPAISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGG 64

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
           T AF+DAEHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRSGAVD++++DSVAA
Sbjct: 65  TVAFIDAEHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSGAVDLLIVDSVAA 124

Query: 157 LTPRAEIEGDMGESLPG 173
           LTPRAE+EGDMG+S  G
Sbjct: 125 LTPRAELEGDMGDSHMG 141


>gi|10444874|gb|AAG16484.1| RecA [Helicobacter pylori]
          Length = 174

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 109/174 (62%), Positives = 142/174 (81%), Gaps = 1/174 (0%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQP TGE+AL+I + + RSG
Sbjct: 1   LHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTGEEALKILETITRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK+T  + +    L+FINQ+R
Sbjct: 61  GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120

Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K  +   GN+ + KVVKN
Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKN 174


>gi|9909576|emb|CAC04279.1| RecA protein [Brevundimonas bullata]
          Length = 147

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 109/147 (74%), Positives = 127/147 (86%), Gaps = 1/147 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG +  + E  E   +G LGLDIALGIGG P+GR++E++GPESSGKTTLALHT+A+ QK 
Sbjct: 1   LGXKEVVVEX-ETGFTGXLGLDIALGIGGLPRGRVIEVFGPESSGKTTLALHTVAEIQKA 59

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG  AFVDAEHALD  YA+KLGV+L NLL+SQPDTGEQALEI D LVRSGAVDI+V+DSV
Sbjct: 60  GGVAAFVDAEHALDPGYAQKLGVNLDNLLMSQPDTGEQALEIVDTLVRSGAVDIVVVDSV 119

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQ 181
           AALTPRAEIEG+MG+SLPG+QARLMSQ
Sbjct: 120 AALTPRAEIEGEMGDSLPGLQARLMSQ 146


>gi|71089144|gb|AAZ23650.1| RecA [uncultured Burkholderia sp.]
          Length = 129

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 88/130 (67%), Positives = 108/130 (83%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG++M+LG  G   E I+VVS+GSLGLDIALG GG P+GR+VEIYGP SSGKTTL
Sbjct: 1   EKQFGKGSVMRLG-AGEAVEDIQVVSTGSLGLDIALGDGGLPRGRVVEIYGPVSSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  +A+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LVRS
Sbjct: 60  TLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|71089100|gb|AAZ23628.1| RecA [uncultured Burkholderia sp.]
          Length = 127

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 86/128 (67%), Positives = 107/128 (83%), Gaps = 1/128 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG++M+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSVMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  +A+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LV S
Sbjct: 60  TLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVLS 119

Query: 144 GAVDIIVI 151
           G++D+IVI
Sbjct: 120 GSIDMIVI 127


>gi|292398070|gb|ADE27983.1| recombinase A [Aeromonas salmonicida subsp. salmonicida]
          Length = 159

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 118/159 (74%), Positives = 141/159 (88%)

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA++QK G  CAF+DAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS A
Sbjct: 1   QVIAEAQKKGKVCAFIDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNA 60

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           VD+I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RM
Sbjct: 61  VDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRM 120

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IK+ D 
Sbjct: 121 KIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKEGDE 159


>gi|239937318|dbj|BAH79117.1| recombinase A [Aeromonas sp. A10]
 gi|239937320|dbj|BAH79118.1| recombinase A [Aeromonas sp. 67P-24]
 gi|239937322|dbj|BAH79119.1| recombinase A [Aeromonas sp. Y62]
 gi|239937324|dbj|BAH79120.1| recombinase A [Aeromonas sp. AC9804]
 gi|239937326|dbj|BAH79121.1| recombinase A [Aeromonas sp. AC0202]
 gi|239937328|dbj|BAH79122.1| recombinase A [Aeromonas sp. GF1]
 gi|239937330|dbj|BAH79123.1| recombinase A [Aeromonas sp. GMA0361]
 gi|239937332|dbj|BAH79124.1| recombinase A [Aeromonas hydrophila]
 gi|239937334|dbj|BAH79125.1| recombinase A [Aeromonas hydrophila]
 gi|259479085|dbj|BAI40090.1| recombinase A [Aeromonas sp. GV16]
 gi|259479087|dbj|BAI40091.1| recombinase A [Aeromonas sp. GV20]
 gi|259479091|dbj|BAI40093.1| recombinase A [Aeromonas sp. Rameshwaram]
 gi|259479095|dbj|BAI40095.1| recombinase A [Aeromonas sp. TT2]
 gi|259479097|dbj|BAI40096.1| recombinase A [Aeromonas sp. TT5]
          Length = 157

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 120/157 (76%), Positives = 141/157 (89%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA++QK G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLV
Sbjct: 1   TLTLQVIAEAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RS AVD+I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FIN
Sbjct: 61  RSNAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFIN 120

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           Q+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+
Sbjct: 121 QIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGA 157


>gi|239937336|dbj|BAH79126.1| recombinase A [Aeromonas punctata]
 gi|259479089|dbj|BAI40092.1| recombinase A [Aeromonas sp. Kochi]
 gi|259479093|dbj|BAI40094.1| recombinase A [Aeromonas sp. TT1]
          Length = 157

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 120/157 (76%), Positives = 140/157 (89%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           TL L  IA++QK G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLV
Sbjct: 1   TLTLQVIAEAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RS AVD+I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FIN
Sbjct: 61  RSNAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFIN 120

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           Q+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+
Sbjct: 121 QIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGA 157


>gi|24251174|gb|AAN46107.1| RecA [Bacillus sp. 2-9-3]
          Length = 144

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 94/144 (65%), Positives = 118/144 (81%)

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           IIV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I++SK   +FINQ+R K+
Sbjct: 1   IIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAINKSKTTAIFINQIREKV 60

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETT GG ALKFYSSVRL++RR  S+K  + + GN+ R+KVVKNK+A PFKQ E
Sbjct: 61  GVMFGNPETTPGGRALKFYSSVRLEVRRAESLKQGNDMVGNKARIKVVKNKVAPPFKQAE 120

Query: 268 FDIMYGEGISFFGELIDLGVKASI 291
            DIMYGEGIS  GE++D+G    I
Sbjct: 121 VDIMYGEGISKEGEILDIGSDLDI 144


>gi|163784154|ref|ZP_02179093.1| recombinase A [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880573|gb|EDP74138.1| recombinase A [Hydrogenivirga sp. 128-5-R1-1]
          Length = 148

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 76/147 (51%), Positives = 108/147 (73%), Gaps = 2/147 (1%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +      +  K KALE ALSQI++ +GKG++M   S     + +E + SGS+ LD+A G+
Sbjct: 4   EVENAKELEAKRKALETALSQIEKKFGKGSVMTFSSDA--IKTVETIPSGSISLDLATGV 61

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
            GFP+G+++E++GPESSGKTTL LH IA++QK GG   F+DAEHA D  YA+ +GV+L++
Sbjct: 62  NGFPRGKVIEVFGPESSGKTTLTLHLIAEAQKRGGKAVFIDAEHAFDPKYAKAIGVNLED 121

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDI 148
           L+ISQPD GEQALEI + L+RSG +D+
Sbjct: 122 LIISQPDYGEQALEIAETLIRSGVIDV 148


>gi|324962816|gb|ADY62489.1| recombinase protein A [Rhizobium yanglingense]
          Length = 133

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 115/133 (86%), Positives = 126/133 (94%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +Y
Sbjct: 1   SLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           ARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SL
Sbjct: 61  ARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSL 120

Query: 172 PGMQARLMSQALR 184
           PG+QARLMSQALR
Sbjct: 121 PGLQARLMSQALR 133


>gi|293337687|gb|ADE43119.1| recombinase A [Pseudomonas aeruginosa]
 gi|293337691|gb|ADE43121.1| recombinase A [Pseudomonas aeruginosa]
          Length = 158

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 110/158 (69%), Positives = 140/158 (88%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           L   YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+
Sbjct: 1   LVPDYACKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGE 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           MG++  G+QARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY
Sbjct: 61  MGDAHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFY 120

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           +SVRLDIRR G++K+ D + G++TRVKVVKNK++ PF+
Sbjct: 121 ASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVSPPFR 158


>gi|71089096|gb|AAZ23626.1| RecA [uncultured Burkholderia sp.]
          Length = 129

 Score =  142 bits (358), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 89/130 (68%), Positives = 109/130 (83%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG++M+LG  G   E I+VVS+GSLGLDIALGIGG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSVMRLG-AGEAVEDIQVVSAGSLGLDIALGIGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  +A+ QK GGT AF+DAEHALD  YA  LGV++ +LL+SQPDTGEQALEI D LVRS
Sbjct: 60  TLQVVAEMQKLGGTAAFIDAEHALDIQYAGTLGVNVSDLLVSQPDTGEQALEIADALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|24251206|gb|AAN46113.1| RecA [Virgibacillus salexigens]
          Length = 144

 Score =  142 bits (357), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 93/144 (64%), Positives = 118/144 (81%)

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           IIV+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I++SK   +FINQ+R K+
Sbjct: 1   IIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAINKSKTTAIFINQIREKV 60

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETT GG ALKFYSSVRL++RR  ++K  + + GN+ R+KVVKNK+A PFKQ E
Sbjct: 61  GVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNEMVGNKARIKVVKNKVAPPFKQAE 120

Query: 268 FDIMYGEGISFFGELIDLGVKASI 291
            D+MYGEGIS  GE+ID+G    I
Sbjct: 121 VDVMYGEGISKEGEIIDIGSDLDI 144


>gi|71089154|gb|AAZ23655.1| RecA [uncultured Burkholderia sp.]
          Length = 128

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 89/128 (69%), Positives = 107/128 (83%), Gaps = 1/128 (0%)

Query: 26  VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
            +GKG++M+LG  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L
Sbjct: 2   QFGKGSVMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTL 60

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             +A+ QK GGT AF+DAEHALD  YA KLGV++  LL+SQPDTGEQALEI D LVRSG+
Sbjct: 61  QVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNELLVSQPDTGEQALEIADALVRSGS 120

Query: 146 VDIIVIDS 153
           +D+IVIDS
Sbjct: 121 IDMIVIDS 128


>gi|213012332|gb|ACJ38732.1| recombination-repair protein [Vibrio diabolicus]
          Length = 158

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 108/154 (70%), Positives = 137/154 (88%)

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           + G TCAF+DAEHALD +YA+KLGVD++ LL+SQPDTGEQALEI D L RSGA+D++V+D
Sbjct: 1   REGKTCAFIDAEHALDPVYAKKLGVDIEALLVSQPDTGEQALEICDALARSGAIDVMVVD 60

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG
Sbjct: 61  SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFG 120

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           +PETTTGGNALKFY+SVRLDIRR G+IK+ D + 
Sbjct: 121 NPETTTGGNALKFYASVRLDIRRTGAIKEGDEVV 154


>gi|180050827|gb|ACB87027.1| RecA [Bacteriovorax sp. GSL4C]
          Length = 143

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 95/143 (66%), Positives = 116/143 (81%), Gaps = 2/143 (1%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM+L S+    +    +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ 
Sbjct: 1   IMKLDSEKKTRKDT-AISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAEC 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++
Sbjct: 60  QKAGGTVAFIDAEHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIV 119

Query: 152 DSVAALTPRAEI-EGDMGESLPG 173
           DSVAALTPRAE+  GDMG+S  G
Sbjct: 120 DSVAALTPRAELVRGDMGDSHMG 142


>gi|164459612|gb|ABY57913.1| recombinase A [Escherichia coli O157:H7]
          Length = 160

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 112/158 (70%), Positives = 141/158 (89%)

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           RKLGVD+ NLL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  
Sbjct: 2   RKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHM 61

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD
Sbjct: 62  GLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 121

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           IRR+G++K+ +++ G++TRVKVVKNK+A+PFKQ EF I
Sbjct: 122 IRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQI 159


>gi|326631933|gb|ADZ98987.1| recombination protein A [Mesorhizobium sp. CCBAU 83939]
          Length = 127

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 105/126 (83%), Positives = 120/126 (95%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +Y
Sbjct: 1   SLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           ARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SL
Sbjct: 61  ARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSL 120

Query: 172 PGMQAR 177
           PG+QAR
Sbjct: 121 PGLQAR 126


>gi|300521206|gb|ADK25822.1| RecA [Vibrio vulnificus]
          Length = 148

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 103/148 (69%), Positives = 127/148 (85%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG P G IVEI+GPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  
Sbjct: 1   GGLPMGGIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDQ 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 61  LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGV 209
           A+RKLT ++ +S C+ +FINQ+RMKIGV
Sbjct: 121 AMRKLTGNLKQSNCMCIFINQIRMKIGV 148


>gi|24251193|gb|AAN46110.1| RecA [Bacillus infernus]
          Length = 144

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 94/144 (65%), Positives = 120/144 (83%)

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           IIVIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKL+ +I++SK I +FINQ+R KI
Sbjct: 1   IIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAINKSKTIAIFINQVREKI 60

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
           GVMFG+PETT GG ALKFY+S+RL++RR  +IK  + + GN+T++KVVKNK+A PF+  E
Sbjct: 61  GVMFGNPETTPGGRALKFYASIRLEVRRAETIKQGNEMVGNKTKIKVVKNKVAPPFRTAE 120

Query: 268 FDIMYGEGISFFGELIDLGVKASI 291
            DIMYGEGIS  GEL+D+G +  I
Sbjct: 121 VDIMYGEGISKEGELVDIGSELDI 144


>gi|71089128|gb|AAZ23642.1| RecA [uncultured Burkholderia sp.]
          Length = 129

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 88/130 (67%), Positives = 107/130 (82%), Gaps = 1/130 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG++M+LG  G   E I+VVS+GSLGLDIALG+GG  +GR+VEIY PESSGKTTL
Sbjct: 1   EKQFGKGSVMRLG-AGEAVEDIQVVSTGSLGLDIALGVGGLLRGRVVEIYRPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  +A+ QK GGT AF+DAEHALD  YA KLGVD+  LL+SQPDTGEQALEI D LVRS
Sbjct: 60  TLQVVAEMQKLGGTAAFIDAEHALDIQYAAKLGVDVSELLVSQPDTGEQALEIADALVRS 119

Query: 144 GAVDIIVIDS 153
           G++D+IVIDS
Sbjct: 120 GSIDMIVIDS 129


>gi|326631921|gb|ADZ98981.1| recombination protein A [Mesorhizobium sp. CCBAU 831015]
 gi|326631923|gb|ADZ98982.1| recombination protein A [Mesorhizobium sp. CCBAU 83908]
 gi|326631925|gb|ADZ98983.1| recombination protein A [Mesorhizobium sp. CCBAU 83915]
 gi|326631927|gb|ADZ98984.1| recombination protein A [Mesorhizobium sp. CCBAU 83919]
 gi|326631929|gb|ADZ98985.1| recombination protein A [Mesorhizobium sp. CCBAU 83923]
 gi|326631931|gb|ADZ98986.1| recombination protein A [Mesorhizobium sp. CCBAU 83935]
 gi|326631935|gb|ADZ98988.1| recombination protein A [Mesorhizobium sp. CCBAU 83943]
 gi|326631937|gb|ADZ98989.1| recombination protein A [Mesorhizobium sp. CCBAU 83948]
 gi|326631939|gb|ADZ98990.1| recombination protein A [Mesorhizobium sp. CCBAU 83953]
 gi|326631941|gb|ADZ98991.1| recombination protein A [Mesorhizobium sp. CCBAU 83963]
 gi|326631943|gb|ADZ98992.1| recombination protein A [Mesorhizobium sp. CCBAU 83978]
 gi|326631945|gb|ADZ98993.1| recombination protein A [Mesorhizobium sp. CCBAU 83979]
 gi|326631947|gb|ADZ98994.1| recombination protein A [Mesorhizobium sp. CCBAU 83980]
 gi|326631949|gb|ADZ98995.1| recombination protein A [Mesorhizobium sp. CCBAU 83994]
          Length = 127

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 106/126 (84%), Positives = 120/126 (95%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           SLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +Y
Sbjct: 1   SLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVY 60

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           ARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SL
Sbjct: 61  ARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSL 120

Query: 172 PGMQAR 177
           PG+QAR
Sbjct: 121 PGLQAR 126


>gi|180050847|gb|ACB87037.1| RecA [Bacteriovorax sp. PS21S]
          Length = 135

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 99/133 (74%), Positives = 113/133 (84%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
            V+S+G LGLD+ALG+GG PKGRI+EIYGPESSGKTTL LH  AQ QK GGT AFVDAEH
Sbjct: 3   PVISTGCLGLDLALGVGGIPKGRIIEIYGPESSGKTTLTLHIAAQCQKQGGTVAFVDAEH 62

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD+ YA KLGVD+ N LISQPD+GEQALEITDMLVRSGAVD +++DSVAALTPRAE+EG
Sbjct: 63  ALDTTYAGKLGVDIPNTLISQPDSGEQALEITDMLVRSGAVDFLIVDSVAALTPRAELEG 122

Query: 166 DMGESLPGMQARL 178
           DMG+S  G   + 
Sbjct: 123 DMGDSHMGXPXQE 135


>gi|195542192|gb|ACF98306.1| RecA [Rhizobium sp. CCBAU 45187]
          Length = 161

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 113/152 (74%), Positives = 134/152 (88%)

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
           + L + G  +    ++  PESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLG
Sbjct: 10  LVLALCGRRRVPCTKLCRPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLG 69

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           VDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QA
Sbjct: 70  VDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQA 129

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           RLMSQALRKLT+SIS+S  +++FINQ+RMKIG
Sbjct: 130 RLMSQALRKLTASISKSNTMVIFINQIRMKIG 161


>gi|293629586|gb|ADE58560.1| recombinase A [Agrobacterium tumefaciens]
          Length = 124

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 103/122 (84%), Positives = 112/122 (91%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDA
Sbjct: 3   EVETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YARKLGVDL+ LLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEI
Sbjct: 63  EHALDPVYARKLGVDLQGLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEI 122

Query: 164 EG 165
           EG
Sbjct: 123 EG 124


>gi|70724316|gb|AAZ07707.1| RecA [Lactobacillus brevis DSM 20054]
          Length = 150

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 100/150 (66%), Positives = 129/150 (86%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG+P+ RIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD  YA  LGV++ +
Sbjct: 1   GGYPRRRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPAYATALGVNIDD 60

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQ
Sbjct: 61  LLLSQPDTGEQGLQIADALISSGAIDIVVVDSVAALAPRAEIEGEMGDAHVGLQARLMSQ 120

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           ALRKL+ +I+++K I +FINQ+R K+GVMF
Sbjct: 121 ALRKLSGTINKTKTIALFINQIREKVGVMF 150


>gi|38602317|emb|CAD58014.1| recombinase A [Gluconacetobacter sp. DST GL_03]
          Length = 142

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 108/141 (76%), Positives = 125/141 (88%)

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT S+SRS  +L+F+NQ+ +K
Sbjct: 2   DVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGSVSRSNTMLIFLNQIXLK 61

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IGVMFGSPETTTGGNALKFY+SV +DIRR+GSIKDKD +TGN TRVKVVKNKMA PF+QV
Sbjct: 62  IGVMFGSPETTTGGNALKFYASVXMDIRRIGSIKDKDEVTGNHTRVKVVKNKMAPPFRQV 121

Query: 267 EFDIMYGEGISFFGELIDLGV 287
           EFDIMYGE I   GELIDLGV
Sbjct: 122 EFDIMYGEWIIKVGELIDLGV 142


>gi|71089142|gb|AAZ23649.1| RecA [uncultured Burkholderia sp.]
          Length = 128

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 87/129 (67%), Positives = 107/129 (82%), Gaps = 1/129 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG++M+LG  G   E I VVS+GSLGL IALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSVMRLG-AGEAVEDIPVVSTGSLGLGIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  +A+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LVRS
Sbjct: 60  TLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVRS 119

Query: 144 GAVDIIVID 152
           G++D+IVID
Sbjct: 120 GSIDMIVID 128


>gi|180050799|gb|ACB87013.1| RecA [Bacteriovorax sp. SAN2]
          Length = 132

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 92/132 (69%), Positives = 112/132 (84%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
             +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ QK GGT AF+DAEH
Sbjct: 1   PSISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++DSVAALTPRAE+EG
Sbjct: 61  ALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIVDSVAALTPRAELEG 120

Query: 166 DMGESLPGMQAR 177
           DMG+S  G  ++
Sbjct: 121 DMGDSHMGXPSK 132


>gi|293629588|gb|ADE58561.1| recombinase A [Rhizobium selenitireducens]
          Length = 125

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 104/122 (85%), Positives = 114/122 (93%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE
Sbjct: 4   IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 63

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIE
Sbjct: 64  HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIE 123

Query: 165 GD 166
           G+
Sbjct: 124 GE 125


>gi|309274206|gb|ADO63747.1| recombinase A [Pseudomonas cuatrocienegasensis]
          Length = 155

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 112/155 (72%), Positives = 138/155 (89%)

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GV++ +LL+SQPDTGEQALEITDMLVRS AVD+IV+DSVAAL P+AEIEG+MG+   G+Q
Sbjct: 1   GVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIVVDSVAALVPKAEIEGEMGDMHVGLQ 60

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           ARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR
Sbjct: 61  ARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRR 120

Query: 236 VGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
            G++K+ D + G++TRVKVVKNK+A PF+Q EF I
Sbjct: 121 TGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQI 155


>gi|213012380|gb|ACJ38756.1| recombination-repair protein [Vibrio chagasii]
          Length = 150

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 108/150 (72%), Positives = 134/150 (89%)

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+
Sbjct: 1   VSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAM 60

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D
Sbjct: 61  RKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGD 120

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
            I GN+TR+KVVKNK+A+PFKQ E  I+YG
Sbjct: 121 EIVGNETRIKVVKNKIAAPFKQAETQILYG 150


>gi|251829623|gb|ACT21190.1| recombination repair protein [Vibrio sp. HHS02]
          Length = 153

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 111/153 (72%), Positives = 136/153 (88%)

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEI
Sbjct: 1   EHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEI 60

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 61  EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNAL 120

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           KFY+SVRLDIRR GSIK+ D   GN+TR+KVVK
Sbjct: 121 KFYASVRLDIRRTGSIKEGDEFVGNETRIKVVK 153


>gi|85701217|sp|Q3EAS6|RECA4_ARATH RecName: Full=Putative DNA repair protein recA homolog 4; AltName:
           Full=Recombinase A homolog 4
          Length = 229

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 105/215 (48%), Positives = 146/215 (67%), Gaps = 22/215 (10%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M L S+      + V S+GS  LD+ALG+GG PKGR+VEIYGPE+SGKT LALH ++   
Sbjct: 1   MYL-SRAVSPRNVPVFSTGSFALDVALGVGGLPKGRLVEIYGPEASGKTALALHMLSM-- 57

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
                         L    A+ +GV+ +NLL+SQPD G+QAL + D L++SG+VD+IV+D
Sbjct: 58  -------------LLIRSLAKAIGVNTENLLLSQPDCGKQALSLVDTLIQSGSVDVIVVD 104

Query: 153 S---VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           S   VAAL P+ E++G+MG++   +QARLMSQALRK + S+  S+ +L+FINQ+R +   
Sbjct: 105 SVSKVAALVPKGELDGEMGDAHMAIQARLMSQALRKFSHSLLLSQTLLIFINQVRER--- 161

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
             G  E T+GGNALKFY+ +RLDI+R+G IK  + 
Sbjct: 162 FGGPTEVTSGGNALKFYAPMRLDIKRIGLIKKGEE 196


>gi|197295649|gb|ACH58562.1| recombinase A [Erwinia aphidicola]
          Length = 161

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 111/158 (70%), Positives = 137/158 (86%)

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAV
Sbjct: 4   VIASAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 63

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMK
Sbjct: 64  DVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNSSTLLIFINQIRMK 123

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           IGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D 
Sbjct: 124 IGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDE 161


>gi|304360733|ref|YP_003856864.1| putative RecA protein [Clostridium phage phiCTP1]
 gi|302495592|gb|ADL40372.1| putative RecA protein [Clostridium phage phiCTP1]
          Length = 394

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 99/386 (25%), Positives = 166/386 (43%), Gaps = 76/386 (19%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L+  +  I + YG   I    ++G+    ++ +   S  L+  L  GG P G+ VE +G 
Sbjct: 4   LDVLMGTINKKYGSTII----TKGTNMIYVDRIPFSSPHLNYLL-YGGLPVGKAVEFFGG 58

Query: 76  ESSGKTTLALHTIAQSQKTG---------------------------------------- 95
           E SGKTT AL  +  +Q                                           
Sbjct: 59  EGSGKTTTALDAVKNAQHKATNEYNDTINDLTEQIAKLKESNSKQASKDITKLEKRLVEV 118

Query: 96  -----GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG--EQALEITDMLVRSGAVDI 148
                 +  +VDAE  LD  +A KLGVDL +L + +P T   EQ L+I    V +G + +
Sbjct: 119 QEQGIRSVLYVDAEQTLDEDWATKLGVDLNSLYLVRPQTETAEQILQIILDCVATGDICM 178

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
            V+DSV  L P+  +E  + +   G  A  +++   +  + ++++KC L+ INQMR  + 
Sbjct: 179 AVLDSVPMLIPQQLMEETLEKKAYGGIALPLARFSGEAPALLTKNKCTLIMINQMRDDLA 238

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK---------DSITGNQTRVKVVKNKM 259
             + +   T GG A+K   +VRL  R+                D   GN   V+VVK K+
Sbjct: 239 NPY-NKYKTPGGRAVKHLYAVRLFFRKGKFFDKDTAELANNKADEPCGNFVNVEVVKTKI 297

Query: 260 ASPFKQV-EFDIMYGEGISFFGELIDLGVKASIVDKSGAWF--------SFKGQRLG--- 307
             P ++   + + Y  GI    ++++L +  +I+++ G+WF         +   + G   
Sbjct: 298 CKPDRRTGMYTLNYETGIDVAADILELALNYNIINQRGSWFDIIDISTGEYIKDKDGNDA 357

Query: 308 --QGRENSKIFLRENIEIAENIESLL 331
             QGR      LR N +I + I + +
Sbjct: 358 RVQGRIPLLELLRTNKDIYDKINAQI 383


>gi|71089150|gb|AAZ23653.1| RecA [uncultured Burkholderia sp.]
          Length = 128

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 85/129 (65%), Positives = 102/129 (79%), Gaps = 1/129 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           +  +GKG++M LG      E   VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   ENQFGKGSVMWLG-ACEAVEDTPVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LL+S PDTGEQALEI D LVRS
Sbjct: 60  TLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNELLVSHPDTGEQALEIADALVRS 119

Query: 144 GAVDIIVID 152
           G++D+IVID
Sbjct: 120 GSIDMIVID 128


>gi|293629584|gb|ADE58559.1| recombinase A [Rhizobium daejeonense]
          Length = 121

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 105/121 (86%), Positives = 114/121 (94%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEH
Sbjct: 1   ETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG
Sbjct: 61  ALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEG 120

Query: 166 D 166
           +
Sbjct: 121 E 121


>gi|203454756|ref|YP_002225072.1| gp193 [Mycobacterium phage Myrna]
 gi|197311804|gb|ACH62162.1| gp193 [Mycobacterium phage Myrna]
          Length = 371

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 96/360 (26%), Positives = 166/360 (46%), Gaps = 33/360 (9%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           +  L  I + YG+G +M+     S       + SGS  LD A+GIGG P+ R +EI G E
Sbjct: 5   QKLLDSINKKYGEGTMMR----ASEVPVHPAIHSGSYALDYAIGIGGLPQDRTIEIGGGE 60

Query: 77  SSGKTTLAL----HTIAQSQKTGGTCAFVDAEHALDSIYARKL----GVDLKNLLISQPD 128
             GKTTLAL      +      G +   +D EH L   + R+L     +D   +L +QPD
Sbjct: 61  GCGKTTLALLAMVQFLTDPANEGRSALILDMEHKLTMSWVRELIGDELMDSDRVLYAQPD 120

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
             EQA  I   LV +G V  ++ DS+      A ++ +  ++  G  A+ + + L     
Sbjct: 121 HIEQATNIFVDLVSTGEVCYVLYDSIGGSAGMAVVQKEAEKAQVGGDAKAIGRLLNLANI 180

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK------ 242
             S+ +C+ VFINQ R  +         T GG   K+   +R+ ++     +DK      
Sbjct: 181 YCSKYRCLGVFINQERDDMDG--YRRYMTPGGRKAKYMFILRIRLKASTKAEDKIIRKIN 238

Query: 243 --DSITGNQTRVKVVKNKMASPFKQVEFDIM------YGEGISFFGELIDLGVKASIVDK 294
             +   G      ++KN++A+PF+  ++++       +G GI    E++ LG    ++  
Sbjct: 239 GEERQIGTLINATIMKNQLAAPFRSAKWNMYNVWTEEFGFGIDTTEEVVRLGTATGVIQG 298

Query: 295 SGAWFS---FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351
           SG W++   F G +L QG +  +  ++E+ ++ + + S +        D       I+T+
Sbjct: 299 SG-WYTHPAFPGGKL-QGMKGIQAAVKEDPKLRDTLVSEILAALKGDEDLAASIAPIDTE 356


>gi|48696479|ref|YP_024521.1| putative DNA repair protein [Staphylococcus phage K]
 gi|66394970|ref|YP_240962.1| ORF021 [Staphylococcus phage G1]
 gi|37729175|gb|AAO47542.1| ORF93 [Staphylococcus phage K]
 gi|62636992|gb|AAX92103.1| ORF021 [Staphylococcus phage G1]
 gi|119658091|gb|ABL87131.1| putative recombinase [Staphylococcus phage 812]
 gi|119658094|gb|ABL87133.1| putative recombinase [Staphylococcus phage 812]
 gi|119658098|gb|ABL87136.1| putative recombinase [Staphylococcus phage 812]
 gi|182627955|gb|ACB89117.1| gp ORF124 [Staphylococcus phage A5W]
          Length = 418

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 84/363 (23%), Positives = 158/363 (43%), Gaps = 49/363 (13%)

Query: 7   MNIVDKSKALEAA-LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           M    K K ++   L+ I    GK   + L S  +  +   V+ +     D  LG GG P
Sbjct: 1   MARAKKGKEVDLTDLNTI--DLGKELGLTLLSDTNRADIKNVIPTMVPQYDYILG-GGIP 57

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
            GR+ E+YG   SGK+T A+H    + + G    ++D E   D+    +LGVD+  L   
Sbjct: 58  LGRLTEVYGLTGSGKSTFAVHLSRIATQLGVITIWIDIEGTADNNRMEQLGVDVSKLFSI 117

Query: 126 QPD----------TGEQALEITDMLVRSGA------VDIIVIDSVAALTPRAEIEGDMGE 169
           Q            + EQ  +  +  + +          + + DS+ A   + EI+G + E
Sbjct: 118 QSGEGRLKNTVELSVEQVGKELEYWIDTFNEKIPGVPIVFIWDSLGATRTQKEIDGGIDE 177

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV-MFGSPETTTGGNALKFYSS 228
              G++A    + +  +T  ++ +   L+ INQ R  +   M+G P  +TGG A +  +S
Sbjct: 178 KQMGLKASATQKVINAVTPKLNDTNTGLIVINQARDDMNAGMYGDPIKSTGGRAFEHSAS 237

Query: 229 VRLDIRRVGSIKDKDSIT------GNQTRVKVVKNKMASPFKQVEFDIMYG--------- 273
           +R+ + +   +K K  +T      G+  R++  K+K++ P ++ E D++           
Sbjct: 238 LRIKVHKASQLKQKSELTGKDEYHGHIMRIETKKSKLSRPGQKAEADLLSDYMVGKEDDP 297

Query: 274 ---EGISFFGELIDLGVKASIVDKSGAWFSF---KGQRLGQGRENSKIF---LRENIEIA 324
               GI     +    V+  ++ K GAW ++    G+ +   +     +   L++N E+ 
Sbjct: 298 ILLNGIDLEHTVYKEAVERGLITK-GAWRNYVTLNGEEI---KLRDAEWVPVLKDNKELY 353

Query: 325 ENI 327
             +
Sbjct: 354 LEL 356


>gi|301088182|gb|ADK61014.1| recombinase A [Pseudomonas koreensis]
 gi|309274199|gb|ADO63745.1| recombinase A [Pseudomonas koreensis]
 gi|309274201|gb|ADO63746.1| recombinase A [Pseudomonas koreensis]
 gi|309274208|gb|ADO63748.1| recombinase A [Pseudomonas koreensis]
          Length = 155

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 112/155 (72%), Positives = 139/155 (89%)

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+   G+Q
Sbjct: 1   GVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQ 60

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           ARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR
Sbjct: 61  ARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRR 120

Query: 236 VGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
            G++K+ D + G++TRVKVVKNK+ASPF+Q EF I
Sbjct: 121 TGAVKEGDEVVGSETRVKVVKNKVASPFRQAEFQI 155


>gi|71089132|gb|AAZ23644.1| RecA [uncultured Burkholderia sp.]
          Length = 128

 Score =  139 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 86/129 (66%), Positives = 108/129 (83%), Gaps = 1/129 (0%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           + +GKG++M+L   G + E I+VVS+GSLGL IALG+GG P+GR+VEIYGPESSGKTTL 
Sbjct: 1   KQFGKGSVMRL-VAGEVVEDIQVVSTGSLGLYIALGVGGLPRGRVVEIYGPESSGKTTLT 59

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  +A+ QK GGT AF+DAEHALD  YA KLGV++ +LL+SQPD+GEQALEI D LVRSG
Sbjct: 60  LQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDSGEQALEIADALVRSG 119

Query: 145 AVDIIVIDS 153
           ++D+IVIDS
Sbjct: 120 SMDMIVIDS 128


>gi|37695714|gb|AAR00388.1| RecA [Vibrio parahaemolyticus]
 gi|37695716|gb|AAR00389.1| RecA [Vibrio parahaemolyticus]
 gi|37695718|gb|AAR00390.1| RecA [Vibrio parahaemolyticus]
 gi|37695720|gb|AAR00391.1| RecA [Vibrio parahaemolyticus]
 gi|37695724|gb|AAR00393.1| RecA [Vibrio parahaemolyticus]
 gi|37695726|gb|AAR00394.1| RecA [Vibrio parahaemolyticus]
 gi|37695728|gb|AAR00395.1| RecA [Vibrio parahaemolyticus]
 gi|37695730|gb|AAR00396.1| RecA [Vibrio parahaemolyticus]
 gi|37695732|gb|AAR00397.1| RecA [Vibrio parahaemolyticus]
 gi|37695736|gb|AAR00399.1| RecA [Vibrio parahaemolyticus]
 gi|145952300|gb|ABP98973.1| RecA [Vibrio parahaemolyticus]
 gi|145952302|gb|ABP98974.1| RecA [Vibrio parahaemolyticus]
 gi|145952304|gb|ABP98975.1| RecA [Vibrio parahaemolyticus]
 gi|145952306|gb|ABP98976.1| RecA [Vibrio parahaemolyticus]
 gi|145952308|gb|ABP98977.1| RecA [Vibrio parahaemolyticus]
 gi|145952310|gb|ABP98978.1| RecA [Vibrio parahaemolyticus]
 gi|145952312|gb|ABP98979.1| RecA [Vibrio parahaemolyticus]
 gi|145952314|gb|ABP98980.1| RecA [Vibrio parahaemolyticus]
 gi|145952316|gb|ABP98981.1| RecA [Vibrio parahaemolyticus]
          Length = 150

 Score =  139 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 107/150 (71%), Positives = 134/150 (89%)

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           + G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+D
Sbjct: 1   REGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVD 60

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG
Sbjct: 61  SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFG 120

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           +PETTTGGNALKFY+SVRLDIRR G+IK+ 
Sbjct: 121 NPETTTGGNALKFYASVRLDIRRTGAIKEG 150


>gi|71089104|gb|AAZ23630.1| RecA [uncultured Burkholderia sp.]
          Length = 127

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 85/128 (66%), Positives = 105/128 (82%), Gaps = 1/128 (0%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +GKG++M+L S G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL
Sbjct: 1   EKQFGKGSVMRL-SAGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  +A+ QK GGT AF+DAEHALD  YA KLGV+  +LL+ QPDTGEQALE  D LVRS
Sbjct: 60  TLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNASDLLVPQPDTGEQALETADALVRS 119

Query: 144 GAVDIIVI 151
           G++D+IVI
Sbjct: 120 GSIDMIVI 127


>gi|30959142|gb|AAO73330.1| recombinase [Helicobacter pylori]
          Length = 125

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 90/125 (72%), Positives = 111/125 (88%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEH
Sbjct: 1   DAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+G
Sbjct: 61  ALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDG 120

Query: 166 DMGES 170
           DMG+ 
Sbjct: 121 DMGDQ 125


>gi|30959144|gb|AAO73331.1| recombinase [Helicobacter pylori]
          Length = 125

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 90/125 (72%), Positives = 111/125 (88%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEH
Sbjct: 1   DSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+G
Sbjct: 61  ALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDG 120

Query: 166 DMGES 170
           DMG+ 
Sbjct: 121 DMGDQ 125


>gi|165872425|ref|ZP_02217060.1| recA protein, group I intron-containing [Bacillus anthracis str.
           A0488]
 gi|190568449|ref|ZP_03021356.1| recA protein, group I intron-containing [Bacillus anthracis
           Tsiankovskii-I]
 gi|196038412|ref|ZP_03105721.1| protein RecA, group I intron-containing [Bacillus cereus
           NVH0597-99]
 gi|196044586|ref|ZP_03111821.1| recA protein, group I intron-containing [Bacillus cereus 03BB108]
 gi|164711863|gb|EDR17405.1| recA protein, group I intron-containing [Bacillus anthracis str.
           A0488]
 gi|190560453|gb|EDV14431.1| recA protein, group I intron-containing [Bacillus anthracis
           Tsiankovskii-I]
 gi|196024621|gb|EDX63293.1| recA protein, group I intron-containing [Bacillus cereus 03BB108]
 gi|196030820|gb|EDX69418.1| protein RecA, group I intron-containing [Bacillus cereus
           NVH0597-99]
          Length = 131

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/119 (54%), Positives = 89/119 (74%)

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           +KFYS+VRL++RR   +K  + I GN+T+VKVVKNK+A PF+  E DIMYGEGIS  GE+
Sbjct: 1   MKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMYGEGISREGEI 60

Query: 283 IDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341
           +D+  +  IV KSGAW+S+  +RLGQGRENSK FL+EN ++ E I   +R++ G+  DS
Sbjct: 61  LDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFIREHHGISEDS 119


>gi|6694841|gb|AAF25426.1|AF214779_1 RecA protein [Arthrobacter agilis]
          Length = 155

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 103/155 (66%), Positives = 129/155 (83%)

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           + GG  AF+DAEHALD  YA++LGVD   LL+SQPDTGEQALEI DML+ SG++DI+VID
Sbjct: 1   RNGGIAAFIDAEHALDPEYAKRLGVDTDALLVSQPDTGEQALEIMDMLIGSGSIDIVVID 60

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T  +S++K   +FINQ+R KIGV FG
Sbjct: 61  SVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFG 120

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           SPETTTGG ALKFY+SVR+D+RR+ ++K+  +  G
Sbjct: 121 SPETTTGGKALKFYASVRIDVRRIETLKEGVNPVG 155


>gi|195542112|gb|ACF98270.1| recombinase protein A [Mesorhizobium sp. CCBAU 65321]
 gi|195542114|gb|ACF98271.1| recombinase protein A [Mesorhizobium sp. CCBAU 65323]
 gi|195542116|gb|ACF98272.1| recombinase protein A [Mesorhizobium sp. CCBAU 65324]
 gi|195542118|gb|ACF98273.1| recombinase protein A [Mesorhizobium sp. CCBAU 65336]
          Length = 116

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 97/116 (83%), Positives = 110/116 (94%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD 
Sbjct: 1   TGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG
Sbjct: 61  VYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEG 116


>gi|29119697|emb|CAD79374.1| RecA protein [Burkholderia caledonica]
          Length = 115

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 76/116 (65%), Positives = 95/116 (81%), Gaps = 1/116 (0%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             +KSKAL AAL+QI++ +GKG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR
Sbjct: 1   TAEKSKALAAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           +VEIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA KLGV++  LLI
Sbjct: 60  VVEIYGPESSGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLI 115


>gi|281212286|gb|EFA86446.1| hypothetical protein PPL_00239 [Polysphondylium pallidum PN500]
          Length = 415

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 94/311 (30%), Positives = 156/311 (50%), Gaps = 39/311 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG--GTCA 99
           FE ++V+ SG + LD  LGIGG PK  I+E+ G  SSGK+T ALH IAQ Q      TC 
Sbjct: 128 FEKLDVIPSGIISLDYRLGIGGIPKNHIIELCGESSSGKSTFALHLIAQLQAADPTATCL 187

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F+D E++  S +A  LGVD   + ISQP   EQ ++I    ++     ++VIDS+A L P
Sbjct: 188 FIDTENSFSSGWASTLGVDQSRVFISQPKYAEQVIDIVSKSLKQQFFGVVVIDSLAGLIP 247

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ--MRMKIGVMFGSPETT 217
           R +++    ES   +Q + + +AL++L+  + +S C LV  NQ     K      + E+ 
Sbjct: 248 REQLDSTNIES---VQYKWLDEALQQLSHLVRQSNCSLVITNQLRNSFKTHQPKNNNESG 304

Query: 218 TGGNALKFYSSVRLDIRRVGSIKDKDSIT-GNQTRVKVVKNKMASPFK----------QV 266
              N+   Y+ ++L++++   + DK     G++T V++ KN +    K            
Sbjct: 305 NNNNSNDKYTDIKLELKKDRYLFDKQERIDGSKTLVEIKKNSLEIHSKLQSKRLLGRFTP 364

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326
            FDI +  GIS   EL+ L    +I+  S                     ++   ++A  
Sbjct: 365 FFDIKFDNGISNNDELVKLAELLNIITTSNT-------------------VKNKKDLA-- 403

Query: 327 IESLLRQNAGL 337
           +E+ ++++ G+
Sbjct: 404 LENSIKKSLGM 414


>gi|37695734|gb|AAR00398.1| RecA [Vibrio parahaemolyticus]
          Length = 150

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 106/150 (70%), Positives = 133/150 (88%)

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           + G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+D
Sbjct: 1   REGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVD 60

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG
Sbjct: 61  SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFG 120

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           +PE TTGGNALKFY+SVRLDIRR G+IK+ 
Sbjct: 121 NPEPTTGGNALKFYASVRLDIRRTGAIKEG 150


>gi|30959136|gb|AAO73327.1| recombinase [Helicobacter pylori]
          Length = 125

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 88/125 (70%), Positives = 110/125 (88%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEH
Sbjct: 1   DAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+G
Sbjct: 61  ALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDG 120

Query: 166 DMGES 170
           DMG+ 
Sbjct: 121 DMGDQ 125


>gi|30959138|gb|AAO73328.1| recombinase [Helicobacter pylori]
 gi|30959140|gb|AAO73329.1| recombinase [Helicobacter pylori]
          Length = 125

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 87/125 (69%), Positives = 109/125 (87%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEH
Sbjct: 1   DAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA++LGVD +NLL+SQP TGE+ALEI + +  SG +D++V+DSVAALTP+AEI+G
Sbjct: 61  ALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITTSGGIDLVVVDSVAALTPKAEIDG 120

Query: 166 DMGES 170
           DMG+ 
Sbjct: 121 DMGDQ 125


>gi|330685954|gb|EGG97578.1| RecA protein [Staphylococcus epidermidis VCU121]
          Length = 142

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 80/141 (56%), Positives = 105/141 (74%), Gaps = 2/141 (1%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+  +  +++ +GKGA+M+LG               S+ LD ALG+GG+PKGRI+
Sbjct: 4   ERQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSTSSG--SVTLDNALGVGGYPKGRII 61

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTT+ALH IA++QK GG  AF+DAEHALD +YA+ LGVD+ NL +SQPD G
Sbjct: 62  EIYGPESSGKTTVALHAIAETQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHG 121

Query: 131 EQALEITDMLVRSGAVDIIVI 151
           EQ LEI +  VRSGAVDI+V+
Sbjct: 122 EQGLEIAEAFVRSGAVDIVVV 142


>gi|325305338|gb|ADZ06017.1| RecA [Aeromonas veronii bv. sobria]
          Length = 148

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 112/148 (75%), Positives = 134/148 (90%)

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIEG+M
Sbjct: 1   DPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEM 60

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNALKFY+
Sbjct: 61  GDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYA 120

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVV 255
           SVRLDIRR+G+IK+ D + GN+TRVKVV
Sbjct: 121 SVRLDIRRIGAIKEGDEVVGNETRVKVV 148


>gi|242117656|dbj|BAH80100.1| recombinase A [Aeromonas salmonicida subsp. salmonicida]
          Length = 153

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 115/153 (75%), Positives = 137/153 (89%)

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             IA++QK G  CAF+DAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS A
Sbjct: 1   QVIAEAQKKGKVCAFIDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNA 60

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           VD+I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RM
Sbjct: 61  VDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRM 120

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           KIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+
Sbjct: 121 KIGVMFGSPETTTGGNALKFYASVRLDIRRIGA 153


>gi|327198329|ref|YP_004306903.1| RecA [Streptococcus phage Dp-1]
 gi|314912631|gb|ADT64022.1| RecA [Streptococcus phage Dp-1]
          Length = 386

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 86/379 (22%), Positives = 164/379 (43%), Gaps = 67/379 (17%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           L Q+ + + K +   +  QG   E +  +   +  ++     GG P+ R+VE +GPESSG
Sbjct: 3   LEQLMKDWNKDSKALVAVQGLEREALPRIPFSAPSMNYQ-TYGGLPRKRVVEFFGPESSG 61

Query: 80  KTTLALHTIAQSQK-----------------------------------------TGGTC 98
           KTT AL  +  +Q                                               
Sbjct: 62  KTTSALDIVKNAQMVFEQEWEQKTEELKEKLENARASKASKTAVKELEMQLDSLQEPLKI 121

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQP--DTGEQALEITDMLVRSGAVDIIVIDSVAA 156
            ++D E+ LD+ +A+K+GVD+ N+ I +P  ++ E+ L+    +  +G V ++V+DS+  
Sbjct: 122 VYLDLENTLDTEWAKKIGVDVDNIWIVRPEMNSAEEILQYVLDIFETGEVGLVVLDSLPY 181

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPET 216
           +  +  I+ ++ +      +  +++  RK+T  ++R   I + INQ+R  +   + +  +
Sbjct: 182 MVSQNLIDEELTKKAYAGISAPLTEFSRKVTPLLTRYNAIFLGINQIREDMNSQY-NAYS 240

Query: 217 TTGGNALKFYSSVRLDIRRVGSIKDK--------DSITGNQTRVKVVKNKMASPF-KQVE 267
           T GG   K   +VRL  R+   + +          +  GN     V K K   P  K V 
Sbjct: 241 TPGGKMWKHACAVRLKFRKGDYLDENGASLTRTARNPAGNVVESFVEKTKAFKPDRKLVS 300

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG-------------QGRENSK 314
           + + Y +GI    +L+D+ V+  ++ K+GAWFS      G             QG+ N  
Sbjct: 301 YTLSYHDGIQIENDLVDVAVEFGVIQKAGAWFSIVDLETGEIMTDEDEEPLKFQGKANLV 360

Query: 315 IFLRENIEIAENIESLLRQ 333
              +E+  + + + + + +
Sbjct: 361 RRFKEDDYLFDMVMTAVHE 379


>gi|290795173|gb|ADD64601.1| RecA recombinase [Vibrio splendidus]
          Length = 125

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 86/127 (67%), Positives = 104/127 (81%), Gaps = 2/127 (1%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+LG   ++   ++ +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  IA 
Sbjct: 1   SIMRLGDNRTM--DVKTISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +Q+ G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQAL+I D L RSGA+D++V
Sbjct: 59  AQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALKICDALARSGAIDVLV 118

Query: 151 IDSVAAL 157
           IDSVAAL
Sbjct: 119 IDSVAAL 125


>gi|290581705|gb|ADD51494.1| RecA [Burkholderia sp. GB-01]
          Length = 121

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 88/122 (72%), Positives = 103/122 (84%), Gaps = 1/122 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRMGD-GEATEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119

Query: 148 II 149
           +I
Sbjct: 120 MI 121


>gi|213012316|gb|ACJ38724.1| recombination-repair protein [Vibrio rotiferianus]
          Length = 152

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 108/152 (71%), Positives = 134/152 (88%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
            +FINQ+RMKIGVMFG+PETTTGGNALKFY+S
Sbjct: 121 CIFINQIRMKIGVMFGTPETTTGGNALKFYAS 152


>gi|37695722|gb|AAR00392.1| RecA [Vibrio parahaemolyticus]
          Length = 150

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 105/149 (70%), Positives = 132/149 (88%)

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           + G T AF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+D
Sbjct: 1   REGKTWAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVD 60

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG
Sbjct: 61  SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFG 120

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           +PE TTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 121 NPEPTTGGNALKFYASVRLDIRRTGAIKE 149


>gi|300521781|gb|ADK26072.1| RecA protein [Vibrio communis]
          Length = 150

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 104/150 (69%), Positives = 132/150 (88%)

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQ
Sbjct: 1   LLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 60

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+
Sbjct: 61  AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 120

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
            D + GN+TR+KV KNK+A+PFK+    IM
Sbjct: 121 GDEVVGNETRIKVFKNKIAAPFKEANTQIM 150


>gi|37727943|gb|AAR02356.1| RecA [Borrelia turicatae]
          Length = 191

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 103/159 (64%), Positives = 134/159 (84%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  I++ QK GG  AF+DAEH LD +YA+ LGV++  L +SQPDTGEQALEI + L
Sbjct: 1   TTLTLQAISEVQKNGGIAAFIDAEHVLDPVYAKALGVNIDELWLSQPDTGEQALEIAEYL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +RSG VD+IV+DSVAALTP+AEI+G+MG+   G+QARLMS+ALRK+T  +S+SK  ++FI
Sbjct: 61  IRSGGVDLIVVDSVAALTPQAEIDGEMGDCQIGLQARLMSKALRKITGILSKSKTCIMFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           NQ+RMKIGVMFG+PETTTGGNALKFYSS+RL++R++  +
Sbjct: 121 NQLRMKIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQV 159


>gi|157503481|gb|ABV58823.1| RecA [Burkholderia ubonensis]
          Length = 119

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 87/120 (72%), Positives = 101/120 (84%), Gaps = 1/120 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 1   GKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D
Sbjct: 60  IAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119


>gi|239826690|ref|YP_002949314.1| RecA domain protein [Geobacillus sp. WCH70]
 gi|239806983|gb|ACS24048.1| RecA domain protein [Geobacillus sp. WCH70]
          Length = 101

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 62/98 (63%), Positives = 75/98 (76%), Gaps = 2/98 (2%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+  ALE AL QI++ +GKG+IM+LG Q      I  +SSGSL LDIALG+GG+P+GR
Sbjct: 2   NQDRQAALEQALKQIEKQFGKGSIMRLGEQTD--RKISTISSGSLALDIALGVGGYPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           IVEIYGPESSGKTT+ALH IA+ QK GG  AF+DAEH 
Sbjct: 60  IVEIYGPESSGKTTVALHAIAEVQKQGGQAAFIDAEHG 97


>gi|258677608|gb|ACV87528.1| RecA [uncultured Burkholderia sp.]
          Length = 123

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 89/124 (71%), Positives = 107/124 (86%), Gaps = 1/124 (0%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G++M+LG QG   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA
Sbjct: 1   GSVMRLG-QGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + QK GGT AF+DAEHALD  YA+KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+I
Sbjct: 60  EMQKIGGTAAFIDAEHALDIQYAQKLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMI 119

Query: 150 VIDS 153
           VIDS
Sbjct: 120 VIDS 123


>gi|290466556|gb|ADD25455.1| RecA [Xenorhabdus bovienii]
 gi|290466572|gb|ADD25463.1| RecA [Xenorhabdus bovienii]
 gi|290466574|gb|ADD25464.1| RecA [Xenorhabdus bovienii]
 gi|290466576|gb|ADD25465.1| RecA [Xenorhabdus bovienii]
 gi|290466582|gb|ADD25468.1| RecA [Xenorhabdus bovienii]
 gi|290466584|gb|ADD25469.1| RecA [Xenorhabdus bovienii]
 gi|290466588|gb|ADD25471.1| RecA [Xenorhabdus bovienii]
 gi|290466594|gb|ADD25474.1| RecA [Xenorhabdus bovienii]
 gi|290466596|gb|ADD25475.1| RecA [Xenorhabdus bovienii]
 gi|290466598|gb|ADD25476.1| RecA [Xenorhabdus bovienii]
 gi|290466612|gb|ADD25483.1| RecA [Xenorhabdus bovienii]
          Length = 140

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 98/140 (70%), Positives = 118/140 (84%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL 
Sbjct: 1   PMGRIVEIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHALDPVYAKKLGVDIDNLLC 60

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+R
Sbjct: 61  SQPDTGEQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMR 120

Query: 185 KLTSSISRSKCILVFINQMR 204
           KL  ++  S  +L+FINQ+R
Sbjct: 121 KLAGNLKNSNTLLIFINQIR 140


>gi|290466554|gb|ADD25454.1| RecA [Xenorhabdus indica]
 gi|290466562|gb|ADD25458.1| RecA [Xenorhabdus budapestensis]
 gi|290466592|gb|ADD25473.1| RecA [Xenorhabdus hominickii]
 gi|290466602|gb|ADD25478.1| RecA [Xenorhabdus cabanillasii]
 gi|290466606|gb|ADD25480.1| RecA [Xenorhabdus innexi]
 gi|290466608|gb|ADD25481.1| RecA [Xenorhabdus stockiae]
          Length = 140

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 98/140 (70%), Positives = 118/140 (84%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL 
Sbjct: 1   PMGRIVEIYGPESSGKTTLTLQVIAAAQREGRTCAFIDAEHALDPVYAKKLGVDIDNLLC 60

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+R
Sbjct: 61  SQPDTGEQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMR 120

Query: 185 KLTSSISRSKCILVFINQMR 204
           KL  ++  S  +L+FINQ+R
Sbjct: 121 KLAGNLKNSNTLLIFINQIR 140


>gi|290466600|gb|ADD25477.1| RecA [Xenorhabdus szentirmaii]
          Length = 140

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 99/140 (70%), Positives = 118/140 (84%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL 
Sbjct: 1   PMGRIVEIYGPESSGKTTLTLQVIAAAQREGRTCAFIDAEHALDPIYAKKLGVDIDNLLC 60

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEGD+G+S  G+ AR+MSQA+R
Sbjct: 61  SQPDTGEQALEICDALSRSGAVDVIIVDSVAALTPKAEIEGDIGDSHMGLAARMMSQAMR 120

Query: 185 KLTSSISRSKCILVFINQMR 204
           KL  ++  S  +L+FINQ+R
Sbjct: 121 KLAGNLKNSNTLLIFINQIR 140


>gi|290466558|gb|ADD25456.1| RecA [Xenorhabdus nematophila]
 gi|290466560|gb|ADD25457.1| RecA [Xenorhabdus kozodoii]
 gi|290466564|gb|ADD25459.1| RecA [Xenorhabdus kozodoii]
 gi|290466566|gb|ADD25460.1| RecA [Xenorhabdus nematophila]
 gi|290466568|gb|ADD25461.1| RecA [Xenorhabdus sp. CR9]
 gi|290466570|gb|ADD25462.1| RecA [Xenorhabdus doucetiae]
 gi|290466578|gb|ADD25466.1| RecA [Xenorhabdus poinarii]
 gi|290466580|gb|ADD25467.1| RecA [Xenorhabdus griffiniae]
 gi|290466586|gb|ADD25470.1| RecA [Xenorhabdus sp. R00I-293]
 gi|290466590|gb|ADD25472.1| RecA [Xenorhabdus beddingii]
 gi|290466604|gb|ADD25479.1| RecA [Xenorhabdus vietnamensis]
 gi|290466610|gb|ADD25482.1| RecA [Xenorhabdus nematophila]
          Length = 140

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 97/140 (69%), Positives = 118/140 (84%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P GRIVEIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL 
Sbjct: 1   PMGRIVEIYGPESSGKTTLTLQVIAAAQREGRTCAFIDAEHALDPVYAKKLGVDIDNLLC 60

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S  G+ AR+MSQA+R
Sbjct: 61  SQPDTGEQALEICDALSRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMR 120

Query: 185 KLTSSISRSKCILVFINQMR 204
           KL  ++  S  +L+FINQ+R
Sbjct: 121 KLAGNLKNSNTLLIFINQIR 140


>gi|290795175|gb|ADD64602.1| RecA recombinase [Vibrio crassostreae]
          Length = 115

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 80/116 (68%), Positives = 92/116 (79%), Gaps = 2/116 (1%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L  
Sbjct: 1   GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           IA +QK G TCAFVDAEHAL  IYA+KLGVD+  LL+SQPDTGEQALEI D L RS
Sbjct: 59  IAAAQKVGKTCAFVDAEHALYPIYAQKLGVDIDALLVSQPDTGEQALEICDALARS 114


>gi|213012308|gb|ACJ38720.1| recombination-repair protein [Vibrio campbellii]
          Length = 147

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 103/147 (70%), Positives = 130/147 (88%)

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+R
Sbjct: 1   SQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMR 60

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           KLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D 
Sbjct: 61  KLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDE 120

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIM 271
           + GN+TR+KVVKNK+A+PFK+    IM
Sbjct: 121 VVGNETRIKVVKNKIAAPFKEANTQIM 147


>gi|180050817|gb|ACB87022.1| RecA [Bacteriovorax sp. AQ]
          Length = 122

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 88/122 (72%), Positives = 106/122 (86%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +  +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ QK GGT AF+DA
Sbjct: 1   KVPAISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRSGAVD++++DSVAALTPRAE+
Sbjct: 61  EHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSGAVDLLIVDSVAALTPRAEL 120

Query: 164 EG 165
           EG
Sbjct: 121 EG 122


>gi|37727939|gb|AAR02355.1| RecA [Borrelia coriaceae]
          Length = 191

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 119/189 (62%), Positives = 155/189 (82%), Gaps = 2/189 (1%)

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TTL L  IA+ QK GG  AF+DAEHAL+ +YAR LGV++  L +SQPDTGEQALEI + L
Sbjct: 1   TTLTLQAIAEVQKNGGIAAFIDAEHALEPVYARALGVNIDELWLSQPDTGEQALEIAEYL 60

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +RSG VD+IV+DSVAALTP+ EI+G+MG+   G+QARLMS+ALRK+T  +S+SK  ++FI
Sbjct: 61  IRSGGVDLIVVDSVAALTPQVEIDGEMGDFQIGLQARLMSKALRKITGILSKSKTCIMFI 120

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI--KDKDSITGNQTRVKVVKNK 258
           NQ+RMKIG+MFG+PETTTGGNALKFYSS+RL++R++  +     D I GN+ RVKVVKNK
Sbjct: 121 NQLRMKIGIMFGNPETTTGGNALKFYSSLRLEVRKIEQVTGHSADDIVGNKVRVKVVKNK 180

Query: 259 MASPFKQVE 267
           +A PF+++E
Sbjct: 181 VAPPFRKIE 189


>gi|56419830|ref|YP_147148.1| hypothetical protein GK1295 [Geobacillus kaustophilus HTA426]
 gi|297530530|ref|YP_003671805.1| RecA domain protein [Geobacillus sp. C56-T3]
 gi|56379672|dbj|BAD75580.1| hypothetical protein [Geobacillus kaustophilus HTA426]
 gi|297253782|gb|ADI27228.1| RecA domain protein [Geobacillus sp. C56-T3]
          Length = 101

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 64/98 (65%), Positives = 76/98 (77%), Gaps = 2/98 (2%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
             D+  ALE AL QI+R +GKGAIM+LG Q  +   + VV SGSL LDIALG+GG+P+GR
Sbjct: 2   NQDRQAALEQALKQIERQFGKGAIMKLGEQ--VDRKVSVVPSGSLALDIALGVGGYPRGR 59

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           IVEIYGPESSGKTT+ALH IA+ QK GG  AF+DAEH 
Sbjct: 60  IVEIYGPESSGKTTVALHAIAEVQKRGGQAAFIDAEHG 97


>gi|291246111|gb|ADD85180.1| RecA [Borrelia recurrentis]
          Length = 163

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 106/161 (65%), Positives = 138/161 (85%)

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTL L  IA+ QKTGG  AF+DAEHALD +YAR LGV++  L +SQPDTGEQAL+I +
Sbjct: 1   GKTTLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQPDTGEQALDIAE 60

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            L+RSG VD+IV+DSVAAL P+AEI+G+MG++  G+QARLMS+ALRK+T+ +S+S   ++
Sbjct: 61  YLIRSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGLQARLMSKALRKITAILSKSNACIM 120

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V  +
Sbjct: 121 FINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKVEQV 161


>gi|157503479|gb|ABV58822.1| RecA [Burkholderia vietnamiensis]
          Length = 120

 Score =  133 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 86/120 (71%), Positives = 102/120 (85%), Gaps = 1/120 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG+IM++G  G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  I
Sbjct: 1   KGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 59

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+
Sbjct: 60  AELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 119


>gi|309274216|gb|ADO63752.1| recombinase A [Pseudomonas umsongensis]
          Length = 149

 Score =  133 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 108/149 (72%), Positives = 135/149 (90%)

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+   G+Q
Sbjct: 1   GVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQ 60

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           ARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR
Sbjct: 61  ARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRR 120

Query: 236 VGSIKDKDSITGNQTRVKVVKNKMASPFK 264
            G++K+ D + G++TRVKVVKNK+ASPF+
Sbjct: 121 TGAVKEGDEVVGSETRVKVVKNKVASPFR 149


>gi|195542122|gb|ACF98275.1| recombinase protein A [Rhizobium alkalisoli]
          Length = 116

 Score =  133 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 100/116 (86%), Positives = 108/116 (93%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD 
Sbjct: 1   TGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRA IEG
Sbjct: 61  VYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAAIEG 116


>gi|180050815|gb|ACB87021.1| RecA [Bacteriovorax sp. MNZ2]
          Length = 120

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 85/120 (70%), Positives = 103/120 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +  +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ QK GGT AF+DA
Sbjct: 1   KVPSISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++DSVAALTPRAE+
Sbjct: 61  EHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIVDSVAALTPRAEL 120


>gi|289570913|ref|ZP_06451140.1| recombination protein recA [Mycobacterium tuberculosis T17]
 gi|289544667|gb|EFD48315.1| recombination protein recA [Mycobacterium tuberculosis T17]
          Length = 447

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 43/86 (50%), Positives = 65/86 (75%)

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VV +  + PFKQ EFDI+YG+GIS  G LID+GV   ++ KSGAWF+++G++LGQG+EN+
Sbjct: 344 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENA 403

Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339
           + FL EN ++A+ IE  +++  G+ A
Sbjct: 404 RNFLVENADVADEIEKKIKEKLGIGA 429


>gi|219558742|ref|ZP_03537818.1| recombinase A [Mycobacterium tuberculosis T17]
          Length = 454

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 43/86 (50%), Positives = 65/86 (75%)

Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           VV +  + PFKQ EFDI+YG+GIS  G LID+GV   ++ KSGAWF+++G++LGQG+EN+
Sbjct: 351 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENA 410

Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339
           + FL EN ++A+ IE  +++  G+ A
Sbjct: 411 RNFLVENADVADEIEKKIKEKLGIGA 436


>gi|213012344|gb|ACJ38738.1| recombination-repair protein [Vibrio harveyi]
          Length = 147

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 104/147 (70%), Positives = 129/147 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIACAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNAL 223
            +FINQ+RMKIGVMFG+PETTTGGNAL
Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNAL 147


>gi|255683589|gb|ACU27400.1| recombination repair protein [Bacillus phage Bcp1]
          Length = 407

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 90/349 (25%), Positives = 154/349 (44%), Gaps = 40/349 (11%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
             +D   G GG P GR++E+ G  S GK+T   H +  +   G  C  +D E   D+   
Sbjct: 48  PKIDKIFG-GGLPFGRMIEVAGVPSGGKSTFTHHVMRVATALGCICVLIDVEGTSDNERL 106

Query: 113 RKLGVDLKNLLISQPDTGE----------QALEITDMLVRS---GAVDIIVIDSVAALTP 159
             LG+D   +L+ QPD  +          Q +E T  L          + V DSV +   
Sbjct: 107 TALGIDTSKVLVKQPDPDKGTALTVEEVGQTVEETLKLFGEKYPHVPVVYVWDSVGSTPS 166

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-GVMFGSPETTT 218
           + E+E D GE   G +A+ ++Q + K+T  +S+SK + + INQ+R  I G          
Sbjct: 167 QVELEKDFGEQNVGARAKAITQFVTKVTPMVSQSKSLFIGINQVRDDIGGNPMFKTYKVP 226

Query: 219 GGNALKFYSSVRLDIRRVGSIKDK----DSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           GG A +  +++R++I+  G+I           G+   VK  K+K++ PF++    ++   
Sbjct: 227 GGKAWEHAATLRIEIKNRGAINKGSGVNKERLGHTMGVKTQKSKVSRPFQEATGSLLADT 286

Query: 275 GISFFGELIDLGVKASIVDK-SGAWFSFKGQRLG----QGRENSKIFLR--ENIEIAENI 327
           GI +   L+ +G +A I+ K S   + +  Q  G    Q R +   +LR  E   + + I
Sbjct: 287 GIDYEYNLVTMGDEAGIIGKPSNQSYEYVDQ-FGTVYKQNRASFIEWLRTPEAQPVRQEI 345

Query: 328 ESLL-------------RQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
            + L              +   +        P I+ +     D++DN+E
Sbjct: 346 LNKLIQIEFPDGYTALKNETLDISGWIDQVVPVISPEFSQSSDNSDNIE 394


>gi|330004304|ref|ZP_08304862.1| RecA protein [Klebsiella sp. MS 92-3]
 gi|328536676|gb|EGF62998.1| RecA protein [Klebsiella sp. MS 92-3]
          Length = 346

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 95/345 (27%), Positives = 163/345 (47%), Gaps = 35/345 (10%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGI---GGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++G    I +  + + +G   L+ A+     GG P GRIVEI+GP S+GKT LA   +  
Sbjct: 4   RIGGNDEIQKVEQWLDTGFPPLNEAVSGDLEGGLPCGRIVEIFGPPSAGKTFLATRAMIA 63

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLG----VDLKNLLISQPDTGEQALEITDML------ 140
           +QK GG   F+D E++ D   A  +G     D  N +  QPDT E A+++T  +      
Sbjct: 64  AQKVGGIAVFLDHENSFDVGLAEVMGLQSDEDEGNWVYKQPDTFEDAIDLTGQILSLVRK 123

Query: 141 ---VRSGAVDIIVIDSVAALTPR-------------AEIEGDMGESLPGMQARLMSQALR 184
              + + A  +IV DS+A++ PR             A+ + ++  +     AR  S  L 
Sbjct: 124 ESLIPAEAPIVIVYDSLASMVPRQKFEKFEKMADGTAKEKDELNMNDNTALARATSANLP 183

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
            L     +    L+F+NQ+R K+GVMFG P T+ GG++ KFY+SVR+ +   G +K+   
Sbjct: 184 TLAKWAQKYNACLIFLNQVRTKMGVMFGDPTTSPGGDSPKFYASVRIKL-GGGQLKEGGD 242

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYG--EGISFFGELIDLGVKASIVDKSGAWFSFK 302
             G   + + VKNK+A PF++ E++  +    G+     L++  +    + K+       
Sbjct: 243 RVGQLVKAECVKNKVAPPFQKCEWNFYFDPSRGLDVVESLVEYMLDKGYIPKTSTGRIEI 302

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347
           G +     +   ++  ++      I   ++     +      EPA
Sbjct: 303 GDKKYTKSQIVDMYREKD---LGEIVKAIKSIQAKMKSKDELEPA 344


>gi|293411941|ref|ZP_06654666.1| RecA protein [Escherichia coli B354]
 gi|291469496|gb|EFF11985.1| RecA protein [Escherichia coli B354]
          Length = 357

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 95/346 (27%), Positives = 156/346 (45%), Gaps = 45/346 (13%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRI 69
             AL  AL +           ++GS   I +    + +G   L+ A+     GGFP GRI
Sbjct: 5   KSALALALKK-----------KIGSNDEIQKVTHWIDTGFPPLNKAISGRYDGGFPCGRI 53

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK----NLLIS 125
           VE++GP S+GKT LA   +  +QK  G   F+D E++ D   A   G++        +  
Sbjct: 54  VEVFGPPSAGKTFLATAAMISAQKQDGLAVFLDHENSFDVGLAVANGLNADEDDGQWVYK 113

Query: 126 QPDTGEQALEITDML---------VRSGAVDIIVIDSVAALTP--RAEIEGDMGESLPGM 174
           QPDT E ++E+   +         +   A   IV DS+A++ P  +AE    M E     
Sbjct: 114 QPDTFEDSVELIGTILKLVRDEELIPESAPICIVADSLASMVPNSKAEKFEKMAEGTAKD 173

Query: 175 Q-----------ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           +           AR  S     L     +    ++F+NQ+R KIGVMFG P T+ GG++ 
Sbjct: 174 KDQLNMNDNTALARATSANFPTLALWARKYNACIIFLNQVRTKIGVMFGDPTTSPGGDSP 233

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG--EGISFFGE 281
           KFY+SVR+ +     +KD     G     + +KNK+A P+ +  +   +    G+     
Sbjct: 234 KFYASVRIRL-GASVMKDGKEKIGQDVGAECIKNKVAPPYGKCTWKFYFDPTRGLDVIES 292

Query: 282 LIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
           L++  +    + K+ +     G +     +  +++ RE   +AE I
Sbjct: 293 LVEYMLDEGYLPKNASGRVEIGDKKYTKSQIVEMY-REKP-LAEII 336


>gi|195542120|gb|ACF98274.1| recombinase protein A [Rhizobium alkalisoli]
          Length = 116

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 99/116 (85%), Positives = 108/116 (93%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHA D 
Sbjct: 1   TGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAHDP 60

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAE+EG
Sbjct: 61  VYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEMEG 116


>gi|180050801|gb|ACB87014.1| RecA [Bacteriovorax sp. SAN5]
 gi|180050895|gb|ACB87061.1| RecA [Bacteriovorax sp. MNZ5]
          Length = 118

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 85/118 (72%), Positives = 102/118 (86%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
             +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ QK GGT AF+DAEH
Sbjct: 1   PSISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           ALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++DSVAALTPRAE+
Sbjct: 61  ALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIVDSVAALTPRAEL 118


>gi|31795224|ref|NP_857683.1| RecA-like recombinase [Yersinia pestis KIM]
 gi|31795441|ref|NP_857894.1| putative RecA-like recombinase [Yersinia pestis KIM]
 gi|270491044|ref|ZP_06208117.1| RecA protein [Yersinia pestis KIM D27]
 gi|2996328|gb|AAC13208.1| RecA homolog [Yersinia pestis KIM 10]
 gi|3883111|gb|AAC82771.1| putative RecA-like recombinase [Yersinia pestis KIM 10]
 gi|270335025|gb|EFA45803.1| RecA protein [Yersinia pestis KIM D27]
          Length = 358

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 91/316 (28%), Positives = 145/316 (45%), Gaps = 43/316 (13%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRI 69
             AL  AL +           ++GS   I +    + SG   L+ A+     GGFP GRI
Sbjct: 5   KSALALALKK-----------KIGSNDEIQKVSHWIDSGFPPLNKAISGRYDGGFPCGRI 53

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK----NLLIS 125
           VE++GP S+GKT LA   +  +QK  G   F+D E++ D   A   G++        +  
Sbjct: 54  VEVFGPPSAGKTFLATAAMVSAQKQDGLAVFLDHENSFDVGLAVANGLNADEDDGQWVYK 113

Query: 126 QPDTGEQALEITDML---------VRSGAVDIIVIDSVAALTP--RAEIEGDMGESLPGM 174
           QPDT E ++E+   +         +   A   IV DS+A++ P  +AE    M E     
Sbjct: 114 QPDTFEDSVELIGTILKLVRDEELIPETAPICIVADSLASMVPNSKAEKFDKMAEGTAKD 173

Query: 175 Q-----------ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           +           AR  S     L     +    ++F+NQ+R KIGVMFG P T+ GG++ 
Sbjct: 174 KDQLNMNDNTALARATSANFPTLALWARKYNACIIFLNQVRTKIGVMFGDPTTSPGGDSP 233

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG--EGISFFGE 281
           KFY+SVR+ +     +KD     G     + +KNK+A PF +  +   +    G+     
Sbjct: 234 KFYASVRIRL-GASVMKDGKEKIGQDVGAECIKNKVAPPFGKCSWKFYFDPTRGLDVIES 292

Query: 282 LIDLGVKASIVDKSGA 297
           L++  ++   + K+ +
Sbjct: 293 LVEYMLEEGYLPKNAS 308


>gi|16082840|ref|NP_395394.1| putative recombinase [Yersinia pestis CO92]
 gi|45478652|ref|NP_995508.1| putative recombinase [Yersinia pestis biovar Microtus str. 91001]
 gi|52788111|ref|YP_093939.1| putative recombinase [Yersinia pestis]
 gi|108793584|ref|YP_636738.1| recombinase [Yersinia pestis Antiqua]
 gi|108793784|ref|YP_636626.1| recombinase [Yersinia pestis Nepal516]
 gi|145597248|ref|YP_001154715.1| recombinase [Yersinia pestis Pestoides F]
 gi|149192741|ref|YP_001293972.1| putative recombinase [Yersinia pestis CA88-4125]
 gi|162417927|ref|YP_001604551.1| RecA protein [Yersinia pestis Angola]
 gi|165940386|ref|ZP_02228897.1| RecA protein homolog [Yersinia pestis biovar Orientalis str. IP275]
 gi|167467623|ref|ZP_02332327.1| hypothetical protein YpesF_06949 [Yersinia pestis FV-1]
 gi|229896996|ref|ZP_04512155.1| putative recombinase [Yersinia pestis Pestoides A]
 gi|229897717|ref|ZP_04512872.1| putative recombinase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229900328|ref|ZP_04515462.1| putative recombinase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229904855|ref|ZP_04519965.1| putative recombinase [Yersinia pestis Nepal516]
 gi|294502038|ref|YP_003565775.1| putative recombinase [Yersinia pestis Z176003]
 gi|5834735|emb|CAB55232.1| putative recombinase [Yersinia pestis CO92]
 gi|45357305|gb|AAS58699.1| putative recombinase [Yersinia pestis biovar Microtus str. 91001]
 gi|52538040|emb|CAG27465.1| putative recombinase [Yersinia pestis]
 gi|108777848|gb|ABG20366.1| recombinase [Yersinia pestis Nepal516]
 gi|108782131|gb|ABG16188.1| recombinase [Yersinia pestis Antiqua]
 gi|145213016|gb|ABP42421.1| recombinase [Yersinia pestis Pestoides F]
 gi|148872399|gb|ABR14888.1| putative recombinase [Yersinia pestis CA88-4125]
 gi|162350899|gb|ABX84848.1| RecA protein homolog [Yersinia pestis Angola]
 gi|165911679|gb|EDR30345.1| RecA protein homolog [Yersinia pestis biovar Orientalis str. IP275]
 gi|229678170|gb|EEO74276.1| putative recombinase [Yersinia pestis Nepal516]
 gi|229686581|gb|EEO78663.1| putative recombinase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229693298|gb|EEO83348.1| putative recombinase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229700032|gb|EEO88072.1| putative recombinase [Yersinia pestis Pestoides A]
 gi|262363932|gb|ACY60651.1| putative recombinase [Yersinia pestis D106004]
 gi|262364088|gb|ACY64424.1| putative recombinase [Yersinia pestis D182038]
 gi|294352509|gb|ADE66565.1| putative recombinase [Yersinia pestis Z176003]
 gi|320017582|gb|ADW01152.1| putative recombinase [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 358

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 91/316 (28%), Positives = 145/316 (45%), Gaps = 43/316 (13%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRI 69
             AL  AL +           ++GS   I +    + SG   L+ A+     GGFP GRI
Sbjct: 5   KSALALALKK-----------KIGSNDEIQKVSHWIDSGFPPLNKAISGRYDGGFPCGRI 53

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK----NLLIS 125
           VE++GP S+GKT LA   +  +QK  G   F+D E++ D   A   G++        +  
Sbjct: 54  VEVFGPPSAGKTFLATAAMVSAQKQDGLAVFLDHENSFDVGLAVANGLNADEDDGQWVYK 113

Query: 126 QPDTGEQALEITDML---------VRSGAVDIIVIDSVAALTP--RAEIEGDMGESLPGM 174
           QPDT E ++E+   +         +   A   IV DS+A++ P  +AE    M E     
Sbjct: 114 QPDTFEDSVELIGTILKLVRDEELIPETAPICIVADSLASMVPNSKAEKFDKMAEGTAKD 173

Query: 175 Q-----------ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           +           AR  S     L     +    ++F+NQ+R KIGVMFG P T+ GG++ 
Sbjct: 174 KDQLNMNDNTALARATSANFPTLALWARKYNACIIFLNQVRTKIGVMFGDPTTSPGGDSP 233

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG--EGISFFGE 281
           KFY+SVR+ +     +KD     G     + +KNK+A PF +  +   +    G+     
Sbjct: 234 KFYASVRIRL-GASVMKDGKEKIGQDVGAECIKNKVAPPFGKCSWKFYFDPTRGLDVIES 292

Query: 282 LIDLGVKASIVDKSGA 297
           L++  ++   + K+ +
Sbjct: 293 LVEYMLEEGYLPKNAS 308


>gi|18466673|ref|NP_569480.1| putative recombinase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|16505989|emb|CAD09875.1| putative recombinase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
          Length = 358

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 91/316 (28%), Positives = 145/316 (45%), Gaps = 43/316 (13%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRI 69
             AL  AL +           ++GS   I +    + SG   L+ A+     GGFP GRI
Sbjct: 5   KSALALALKK-----------KIGSNDEIQKVSHWIDSGFPPLNKAISGRYDGGFPCGRI 53

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK----NLLIS 125
           VE++GP S+GKT LA   +  +QK  G   F+D E++ D   A   G++        +  
Sbjct: 54  VEVFGPPSAGKTFLATAAMVSAQKQDGLAVFLDHENSFDVGLAVANGLNADEDDGQWVYK 113

Query: 126 QPDTGEQALEITDML---------VRSGAVDIIVIDSVAALTP--RAEIEGDMGESLPGM 174
           QPDT E ++E+   +         +   A   IV DS+A++ P  +AE    M E     
Sbjct: 114 QPDTFEDSVELIGTILKLVRDEELIPETAPICIVADSLASMVPNSKAEKFDKMAEGTAKD 173

Query: 175 Q-----------ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           +           AR  S     L     +    ++F+NQ+R KIGVMFG P T+ GG++ 
Sbjct: 174 KDQLNMNDNTALARATSANFPTLALWARKYNACIIFLNQVRTKIGVMFGDPTTSPGGDSP 233

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG--EGISFFGE 281
           KFY+SVR+ +     +KD     G     + +KNK+A PF +  +   +    G+     
Sbjct: 234 KFYASVRIRL-GASVMKDGKEKIGQDVGAECIKNKVAPPFGKCSWKFYFDPTRGLDVIES 292

Query: 282 LIDLGVKASIVDKSGA 297
           L++  ++   + K+ +
Sbjct: 293 LVEYMLEEGYLPKNAS 308


>gi|180050901|gb|ACB87064.1| RecA [Bacteriovorax sp. MNZ4]
          Length = 118

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 84/118 (71%), Positives = 101/118 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +  +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ QK GGT AF+DA
Sbjct: 1   KVPSISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           EHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++DSVAALTPRA
Sbjct: 61  EHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIVDSVAALTPRA 118


>gi|157503483|gb|ABV58824.1| RecA [Burkholderia ubonensis]
          Length = 115

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 79/112 (70%), Positives = 91/112 (81%), Gaps = 1/112 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG+IM++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  
Sbjct: 5   GKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 63

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           IA+    GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD 
Sbjct: 64  IAELHNIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDA 115


>gi|180050855|gb|ACB87041.1| RecA [Bacteriovorax sp. JS8]
          Length = 117

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 89/117 (76%), Positives = 102/117 (87%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
             V+ +G LGLD+ALG+GG PKGRI+EIYGPESSGKTTL LH  AQ Q+ GGT AFVDAE
Sbjct: 1   TPVIPTGCLGLDLALGVGGIPKGRIIEIYGPESSGKTTLTLHIAAQCQQQGGTVAFVDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           HALD+ YA KLGVD+ N LISQPD+GEQALEITDMLVRSGAVD++++DSVAALTPRA
Sbjct: 61  HALDTSYASKLGVDIPNTLISQPDSGEQALEITDMLVRSGAVDLLIVDSVAALTPRA 117


>gi|158079360|ref|YP_001504173.1| putative recombinase A [Enterococcus phage phiEF24C]
 gi|157890204|dbj|BAF81332.1| putative recombinase A [Enterococcus phage phiEF24C]
          Length = 415

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 140/294 (47%), Gaps = 32/294 (10%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
           +        + + +    LD  LG GG P GR+VE++G  SSGK+TLA+H    +Q    
Sbjct: 27  TDTKFSNVSDRLPTMIPQLDYILG-GGLPFGRMVEVFGKNSSGKSTLAVHLTKVAQMLDV 85

Query: 97  TCAFVDAEHALDSIYARKLGVDLK--NLLISQPDTG--------------EQALEITDML 140
              ++D E   D     +LGVD     + + +P                 E+   +  + 
Sbjct: 86  PTVWIDVEGTADPERLAELGVDFSAGGVFMVEPKQNKDGSKDTITVERVAEELQRLLPVF 145

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            + G   +I+ DSVA      E+E  +G   PG++A+ M+Q  + +   ++ SK + + I
Sbjct: 146 SKLGKPVLIIWDSVAQTASEKELEKGVGNQQPGIKAKAMAQFAQIIAPLMTNSKALFIAI 205

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK---------DSITGNQTR 251
           NQ R ++G MFG  + + GG+AL  ++S+RL++ +   IK+K         ++  G+  R
Sbjct: 206 NQARDELGSMFGGVD-SPGGHALHHWASLRLEVVKASQIKNKELNAFGAEEETYVGHILR 264

Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV----KASIVDKSGAWFSF 301
           VK  K+K++ P ++ E  +M   G++    +         + +++   G W S+
Sbjct: 265 VKTAKSKVSRPNQKAEMYLMSDTGLNLEENIYRSCFATNKQYALIS-GGTWKSY 317


>gi|166214638|ref|ZP_02240673.1| RecA protein homolog [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166204180|gb|EDR48660.1| RecA protein homolog [Yersinia pestis biovar Antiqua str.
           B42003004]
          Length = 358

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 89/316 (28%), Positives = 144/316 (45%), Gaps = 43/316 (13%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRI 69
             AL  AL +           ++GS   I +    + SG   L+ A+     GGFP GRI
Sbjct: 5   KSALALALKK-----------KIGSNDEIQKVSHWIDSGFPPLNKAISGRYDGGFPCGRI 53

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK----NLLIS 125
           VE++GP S+GKT LA   +  +QK  G   F+D E++ D   A   G++        +  
Sbjct: 54  VEVFGPPSAGKTFLATAAMVSAQKQDGLAVFLDHENSFDVGLAVANGLNADEDDGQWVYK 113

Query: 126 QPDTGEQALEITDML---------VRSGAVDIIVIDSVAALTP--RAEIEGDMGESLPGM 174
           QPDT E ++E+   +         +   A   IV DS+A++ P  +AE    M E     
Sbjct: 114 QPDTFEDSVELIGTILKLVRDEELIPETAPICIVADSLASMVPNSKAEKFDKMAEGTAKD 173

Query: 175 QAR-----------LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           + +             S     L     +    ++F+NQ+R KIGVMFG P T+ GG++ 
Sbjct: 174 KDQLNMNDNTALERATSANFPTLALWARKYNACIIFLNQVRTKIGVMFGDPTTSPGGDSP 233

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG--EGISFFGE 281
           KFY+SVR+ +     +KD     G     + +KNK+A PF +  +   +    G+     
Sbjct: 234 KFYASVRIRL-GASVMKDGKEKIGQDVGAECIKNKVAPPFGKCSWKFYFDPTRGLDVIES 292

Query: 282 LIDLGVKASIVDKSGA 297
           L++  ++   + K+ +
Sbjct: 293 LVEYMLEEGYLPKNAS 308


>gi|180050845|gb|ACB87036.1| RecA [Bacteriovorax sp. PS93S]
          Length = 117

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 91/117 (77%), Positives = 103/117 (88%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
             V+S+G LGLD+ALG+GG PKGRI+EIYGPESSGKTTL LH  AQ QK GGT AFVDAE
Sbjct: 1   TPVISTGCLGLDLALGVGGIPKGRIIEIYGPESSGKTTLTLHIAAQCQKQGGTVAFVDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           HALD+ YA KLGVD+ N LISQPD+GEQALEITDMLVRSGAVD++++DSVAALTPRA
Sbjct: 61  HALDTTYAAKLGVDIPNTLISQPDSGEQALEITDMLVRSGAVDLLIVDSVAALTPRA 117


>gi|180050849|gb|ACB87038.1| RecA [Bacteriovorax sp. PS91S]
          Length = 118

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 91/116 (78%), Positives = 103/116 (88%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
            V+S+G LGLD+ALG+GG PKGRI+EIYGPESSGKTTL LH  AQ QK GGT AFVDAEH
Sbjct: 3   PVISTGCLGLDLALGVGGIPKGRIIEIYGPESSGKTTLTLHIAAQCQKQGGTVAFVDAEH 62

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           ALD+ YA KLGVD+ N LISQPD+GEQALEITDMLVRSGAVD++++DSVAALTPRA
Sbjct: 63  ALDTTYAAKLGVDIPNTLISQPDSGEQALEITDMLVRSGAVDLLIVDSVAALTPRA 118


>gi|300813295|ref|ZP_07093651.1| putative protein RecA [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300512594|gb|EFK39738.1| putative protein RecA [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 105

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/105 (56%), Positives = 80/105 (76%), Gaps = 2/105 (1%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           + ++K +AL+  L+ I++ YG+G+IM+LG    +   I+ + +G+L LDIALGIGG PKG
Sbjct: 3   DNLEKKEALDKVLATIEKQYGEGSIMKLGQDAKL--NIDSIPTGALALDIALGIGGIPKG 60

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
           RI+EIYGPESSGKTT+ALH +A+SQK GG  AF+DAEHALD    
Sbjct: 61  RIIEIYGPESSGKTTIALHIVAESQKLGGNAAFIDAEHALDPGLC 105


>gi|85816339|gb|ABC84479.1| homologous recombination factor [Streptococcus suis]
          Length = 133

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 71/130 (54%), Positives = 99/130 (76%), Gaps = 4/130 (3%)

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK-- 240
           +RKL +SI+++K + +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+D+R    IK  
Sbjct: 2   MRKLGASINKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVRGNTQIKGT 61

Query: 241 --DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
              KD   G +T+VK+VKNK+A PFK+   +IMYGEGIS  GELI++G    I+ K+GAW
Sbjct: 62  GDKKDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAW 121

Query: 299 FSFKGQRLGQ 308
           +S+ G+++GQ
Sbjct: 122 YSYNGEKIGQ 131


>gi|6694837|gb|AAF25422.1|AF214775_1 RecA protein [Arthrobacter sp. 'SMCC ZAT200']
          Length = 155

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 102/152 (67%), Positives = 124/152 (81%), Gaps = 1/152 (0%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F+DA   LD  YA KLGVD   LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL P
Sbjct: 4   FIDARR-LDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVP 62

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           RAEIEGDMG+S  G+QARLMSQALRK+T  +S++K   +FINQ+R KIGV FGSPETTTG
Sbjct: 63  RAEIEGDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTG 122

Query: 220 GNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           G ALKFY+SVR+D+RR+ ++K+     GN+T+
Sbjct: 123 GKALKFYASVRIDVRRIQTLKEGADSVGNRTK 154


>gi|164612323|gb|ABY63443.1| RecA [Clostridium botulinum]
 gi|164612325|gb|ABY63444.1| RecA [Clostridium botulinum]
 gi|164612327|gb|ABY63445.1| RecA [Clostridium botulinum]
 gi|164612329|gb|ABY63446.1| RecA [Clostridium botulinum]
 gi|164612331|gb|ABY63447.1| RecA [Clostridium botulinum]
          Length = 141

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 105/140 (75%), Positives = 124/140 (88%)

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG  AF+DAEHALD  YAR LGVD+ NL++SQPDTGEQALEIT+ LVRSGAVD+IV+DSV
Sbjct: 2   GGAAAFIDAEHALDPSYARNLGVDIDNLIVSQPDTGEQALEITEALVRSGAVDVIVVDSV 61

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AAL PRAEIEG+MG+S  G+QARLMSQALRKL  SI++SKC+ +FINQ+R K+G+MFG+P
Sbjct: 62  AALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGSINKSKCVAIFINQLREKVGIMFGNP 121

Query: 215 ETTTGGNALKFYSSVRLDIR 234
           ETT GG ALKFYSSVRLD+R
Sbjct: 122 ETTPGGRALKFYSSVRLDVR 141


>gi|164612321|gb|ABY63442.1| RecA [Clostridium botulinum]
          Length = 141

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 105/140 (75%), Positives = 124/140 (88%)

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG  AF+DAEHALD  YAR LGVD+ NL++SQPDTGEQALEIT+ LVRSGAVD+IV+DSV
Sbjct: 2   GGAAAFIDAEHALDPAYARNLGVDIDNLIVSQPDTGEQALEITEALVRSGAVDVIVVDSV 61

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AAL PRAEIEG+MG+S  G+QARLMSQALRKL  SI++SKC+ +FINQ+R K+G+MFG+P
Sbjct: 62  AALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGSINKSKCVAIFINQLREKVGIMFGNP 121

Query: 215 ETTTGGNALKFYSSVRLDIR 234
           ETT GG ALKFYSSVRLD+R
Sbjct: 122 ETTPGGRALKFYSSVRLDVR 141


>gi|146431676|gb|ABQ40820.1| recombination-repair protein [Vibrio harveyi]
          Length = 140

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 102/140 (72%), Positives = 127/140 (90%)

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALT
Sbjct: 1   AFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALT 60

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           P+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTT
Sbjct: 61  PKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTT 120

Query: 219 GGNALKFYSSVRLDIRRVGS 238
           GGNALKFY+SVRLDIRR G+
Sbjct: 121 GGNALKFYASVRLDIRRTGA 140


>gi|20799009|emb|CAD30713.2| glutamine synthetase I [Mesorhizobium sp. HN8A1]
          Length = 423

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 85/109 (77%), Positives = 96/109 (88%), Gaps = 1/109 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG+   + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++QK 
Sbjct: 315 LGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQKK 373

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRS
Sbjct: 374 GGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRS 422


>gi|282599230|ref|YP_003358542.1| UvsX RecA-like recombination protein [Shigella phage phiSboM-AG3]
 gi|226973536|gb|ACO94289.1| UvsX RecA-like recombination protein [Shigella phage phiSboM-AG3]
          Length = 361

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 75/331 (22%), Positives = 136/331 (41%), Gaps = 25/331 (7%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTI--AQS 91
           SQ    E   + S+G   +DIA      GG   G I  + G   + KT   L  +     
Sbjct: 24  SQSDALEPSIICSTGIPLIDIAWSGRIDGGLISG-IKMMVGDSRTFKTMFGLVDVKAYMD 82

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ---ALEITDMLVRSGAVDI 148
           +     C F D+E   ++ Y   +G+D+  +L    D  EQ    L      V+ G   I
Sbjct: 83  KFPDALCIFADSEKGANADYWTSMGIDMDRVLYVPIDNVEQTKIRLLQILQEVKKGDHVI 142

Query: 149 IVIDSVAALTPRAEIEGDM--GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           I IDS++ L    E+E  +   ++    +AR ++   R +T  I+    +LV+IN    +
Sbjct: 143 IFIDSISQLPSTKEVEDAIKGNDTQDMTRARALNSFWRVITPEINSKDLVLVWINSYYDE 202

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           IG  +  P    G     F SS  +       +K+   + G    + ++K +      ++
Sbjct: 203 IGNQYAEPNIKGGKQG--FLSSNLIWFITRSQVKEDKDLLGWNFNIGIMKGRHVKEKAKL 260

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVD-KSGAWFSF--------KGQRLGQGRENSKIF- 316
              ++Y  GI  +  L+++      VD  S  W+          + ++  Q R+    F 
Sbjct: 261 PVTVLYDGGIDRWSGLLEIARALGYVDMPSSGWYVRTAKGGFDPEKEKKYQKRQMDDDFW 320

Query: 317 --LRENIEIAENIESLLRQNAGLVADSLLQE 345
             L EN++ A++++ +   + G V  + + E
Sbjct: 321 YPLLENVDFADDVKKMFGVSNGTVMPANMLE 351


>gi|180050873|gb|ACB87050.1| RecA [Bacteriovorax sp. T8]
          Length = 169

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 104/162 (64%), Positives = 126/162 (77%), Gaps = 10/162 (6%)

Query: 27  YGKGA----------IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           +GKG+          IM+L +  +  E I  +S+G LGLD+ LGIGG PKGRI+EIYGPE
Sbjct: 1   FGKGSYHGIYLANGSIMKLDADSNTPEKIPAISTGCLGLDLGLGIGGVPKGRIIEIYGPE 60

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL LH  A+ QK GGT AFVDAEHALD++YA  LGVD+ N LISQPD+GEQALEI
Sbjct: 61  SSGKTTLTLHIAAECQKEGGTVAFVDAEHALDTVYASNLGVDIPNTLISQPDSGEQALEI 120

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
            DMLVRSGAVD++++DSVAALTPRAE+EGDMG++  G+ AR 
Sbjct: 121 ADMLVRSGAVDLLIVDSVAALTPRAELEGDMGDTHLGLHARP 162


>gi|164612319|gb|ABY63441.1| RecA [Clostridium botulinum]
          Length = 141

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 104/140 (74%), Positives = 124/140 (88%)

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG  AF+DAEHALD  YAR LGVD+ NL++SQPDTGEQALEIT+ LVRSGAVD+IV+DSV
Sbjct: 2   GGAAAFIDAEHALDPSYARNLGVDIDNLIVSQPDTGEQALEITEALVRSGAVDVIVVDSV 61

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AAL PRAEIEG+MG++  G+QARLMSQALRKL  SI++SKC+ +FINQ+R K+G+MFG+P
Sbjct: 62  AALVPRAEIEGEMGDAHVGLQARLMSQALRKLAGSINKSKCVAIFINQLREKVGIMFGNP 121

Query: 215 ETTTGGNALKFYSSVRLDIR 234
           ETT GG ALKFYSSVRLD+R
Sbjct: 122 ETTPGGRALKFYSSVRLDVR 141


>gi|164612317|gb|ABY63440.1| RecA [Clostridium botulinum]
          Length = 141

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 104/140 (74%), Positives = 124/140 (88%)

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG  AF+DAEHALD  YAR LGVD+ NL++SQPDTGEQALEIT+ LVRSGAVD+IV+DSV
Sbjct: 2   GGAAAFIDAEHALDPSYARNLGVDIDNLIVSQPDTGEQALEITEALVRSGAVDVIVVDSV 61

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           AAL PRAEIEG+MG++  G+QARLMSQALRKL  SI++SKC+ +FINQ+R K+G+MFG+P
Sbjct: 62  AALVPRAEIEGEMGDTHVGLQARLMSQALRKLAGSINKSKCVAIFINQLREKVGIMFGNP 121

Query: 215 ETTTGGNALKFYSSVRLDIR 234
           ETT GG ALKFYSSVRLD+R
Sbjct: 122 ETTPGGRALKFYSSVRLDVR 141


>gi|229086331|ref|ZP_04218508.1| hypothetical protein bcere0022_29180 [Bacillus cereus Rock3-44]
 gi|228696943|gb|EEL49751.1| hypothetical protein bcere0022_29180 [Bacillus cereus Rock3-44]
          Length = 121

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 58/117 (49%), Positives = 80/117 (68%)

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           +RR   +K  + I GN+T+VKVVKNK+A PF+  E DIMYGEGIS  GE++D+  +  IV
Sbjct: 1   MRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIV 60

Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
            KSGAW+S+  +RLGQGREN+K FL+EN +I E I   +R++ G+  DS  +     
Sbjct: 61  QKSGAWYSYNEERLGQGRENAKQFLKENQDIREEIAFFIREHHGIGEDSASEGTEEG 117


>gi|326804556|ref|YP_004327427.1| UvsX RecA-like recombination protein [Salmonella phage Vi01]
 gi|301795206|emb|CBW37924.1| UvsX RecA-like recombination protein [Salmonella phage Vi01]
          Length = 363

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 68/347 (19%), Positives = 135/347 (38%), Gaps = 35/347 (10%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV----EIYGPESSGKTTLALHTIAQS- 91
           S+ ++ +   + S+G   L+IA    G P G I     ++ G   + KT   L  +    
Sbjct: 24  SKTTLLDKQVIASTGIPLLNIAWT--GRPDGGIHSGSKQLVGDSRTFKTMFGLVDVKAYL 81

Query: 92  -QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV----RSGAV 146
            +     C F D+E   +  Y   +G+D+  ++   P    + ++I  M +    + G  
Sbjct: 82  DKYPDAICVFGDSEFGANQKYWDAMGIDMSRVVHV-PIVSVENMQIVFMQMLNDTQRGEH 140

Query: 147 DIIVIDSVAALTPRAEIEGDM--GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            I  IDS++ L    E+   +   +     +AR ++   R +T  ++    ++V+IN   
Sbjct: 141 IIFFIDSISQLPSTKEVNDAIKGEDKQDMTRARALNSFWRTVTVQLNMKNLLMVWINSYY 200

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
            +IG  +  P    G         +    RR         I G Q  + ++K +      
Sbjct: 201 DEIGNDYAEPNLKGGKQGFLSCDLIWFITRRQVKEDGDKEIRGWQFVINIMKGRHVKEKA 260

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVD-KSGAWFSFKGQRLGQGRENSKI-------- 315
           +    ++Y  GI  +  L+++      V+  SG+W+    QR  +G  N +         
Sbjct: 261 KFPVTVLYDGGIDKWSGLLEIARALGYVELVSGSWY----QRTAKGGFNQEKETKLRKSQ 316

Query: 316 -------FLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
                   L EN +  ++I S+   + G V  + + E   +    ++
Sbjct: 317 LGDDFWFPLLENPQFCDDIHSMCGISTGPVMPADMLEKFDDVIKTSE 363


>gi|180050857|gb|ACB87042.1| RecA [Bacteriovorax sp. JS9]
          Length = 120

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 88/119 (73%), Positives = 103/119 (86%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + I  +S+  LGLD+ALG+GG PKGRI+EIYGPESSGKTTL LH  A+ QK GGT AF+D
Sbjct: 2   DKIPAISTSCLGLDLALGVGGVPKGRIIEIYGPESSGKTTLTLHIAAECQKAGGTVAFID 61

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           AEHALD+ YA KLGVD+ N LISQPD+GEQALEITDMLVRSGAVD++++DSVAALTPRA
Sbjct: 62  AEHALDTAYASKLGVDIPNTLISQPDSGEQALEITDMLVRSGAVDLLIVDSVAALTPRA 120


>gi|311992567|ref|YP_004009435.1| UvsX RecA-like recombination protein [Acinetobacter phage Ac42]
 gi|298684350|gb|ADI96311.1| UvsX RecA-like recombination protein [Acinetobacter phage Ac42]
          Length = 385

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 122/299 (40%), Gaps = 13/299 (4%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALG--IGGFPKGRIVEIYGPESSGKTTLALHTIA--QSQ 92
           S+  +F   +++ +    L+IAL   +GG  K  +    GP    K+ +AL  ++    +
Sbjct: 22  SKSKMFNEKDILRTKIPMLNIALSGELGGGMKSGLTIFAGPSKHFKSNMALTVVSAFMKK 81

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA---LEITDMLVRSGAVDII 149
                C F D+E  +   Y   +GV+   ++ +   + EQ    +      V+ G   I+
Sbjct: 82  YEDAICLFYDSEFGITPEYLSAMGVNPDRVVHTPIVSVEQIKIDMANQLKAVQRGEKVIV 141

Query: 150 VIDSVAALTPRAEIEGDMGESL--PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +IDS+  +  + EIE    E       +A+ M    R +T   S      + IN     I
Sbjct: 142 LIDSIGNMASKKEIEDAENEKTTADMTRAKAMKSLFRIVTPYFSTKNIPCIAINHTIETI 201

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
             MF     T G      Y++  +       IKD   + G Q  +   K++      +  
Sbjct: 202 -EMFSKTVMTGGTGP--MYAADTVFYIGKRQIKDGTELEGFQFVLNAEKSRYVKEKSKFF 258

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDK-SGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325
            D+ +  GI  +  L+D+ ++  +V K    W++ +    G+ R  +K +  ++ +  E
Sbjct: 259 IDVTFEGGIDPYSGLLDMALELGMVVKPKNGWYARELTIDGEKRRETKSWRAKDTKCTE 317


>gi|180050843|gb|ACB87035.1| RecA [Bacteriovorax sp. PS12B]
          Length = 115

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 89/115 (77%), Positives = 102/115 (88%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
            V+S+G LGLD+ALG+GG PKGRI+EIYGPESSGKTTL LH  AQ QK GGT AFVDAEH
Sbjct: 1   PVISTGCLGLDLALGVGGIPKGRIIEIYGPESSGKTTLTLHIAAQCQKQGGTVAFVDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           ALD+ YA KLGVD+ N LISQPD+GEQALEITDMLVR+GAVD++++DSVAALTPR
Sbjct: 61  ALDTTYAAKLGVDIPNTLISQPDSGEQALEITDMLVRTGAVDLLIVDSVAALTPR 115


>gi|253576946|ref|ZP_04854270.1| recA protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843677|gb|EES71701.1| recA protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 111

 Score =  126 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 56/113 (49%), Positives = 81/113 (71%), Gaps = 6/113 (5%)

Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302
           + + G++TR+KVVKNK+A PFKQVE D+MYGEGIS    L+DLGV+ ++++KSG+WFS+ 
Sbjct: 1   NEMVGSRTRIKVVKNKVAPPFKQVEVDMMYGEGISKEATLLDLGVELNVIEKSGSWFSYA 60

Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355
           G RLGQGREN+K FL+E+ EIA  I+S +R         +  +P +   +D +
Sbjct: 61  GDRLGQGRENAKQFLKEHPEIASKIDSEIR------GSEVKLKPVMEEAEDRE 107


>gi|315112967|dbj|BAJ41763.1| recombinase A [Lactobacillus delbrueckii]
          Length = 137

 Score =  126 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 88/137 (64%), Positives = 116/137 (84%)

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VE+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+  L++SQP+T
Sbjct: 1   VEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDQLILSQPNT 60

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL+ +
Sbjct: 61  GEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGT 120

Query: 190 ISRSKCILVFINQMRMK 206
           I+++K I +FINQ+R K
Sbjct: 121 IAKTKTIAIFINQIREK 137


>gi|299778994|ref|YP_003734188.1| UvsX RecA-like recombination protein [Enterobacteria phage IME08]
 gi|298105723|gb|ADI55367.1| UvsX RecA-like recombination protein [Enterobacteria phage IME08]
          Length = 394

 Score =  126 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 77/363 (21%), Positives = 137/363 (37%), Gaps = 26/363 (7%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGR 68
           KS+ ++A+ S++     K           +F G + V +    L+IALG     G   G 
Sbjct: 6   KSRLIKASTSKMTADLTK---------SKLFNGRDEVPTRIPMLNIALGGALNAGLQSGL 56

Query: 69  IVEIYGPESSGKT--TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
            +    P    KT   L +      +     C F D+E      Y R +GVDL+ ++ + 
Sbjct: 57  TI-FAAPSKHFKTLFGLTMVAAYMKKYPDAICLFYDSEFGASESYFRSMGVDLERVVHTP 115

Query: 127 PDTGEQA---LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP--GMQARLMSQ 181
             + EQ    +      +  G   II IDS+     + E E  + E +     +A+ +  
Sbjct: 116 IQSVEQLKVDMTNQLEEITRGEKVIIFIDSIGNTASKKETEDALNEKVVGDMTRAKSLKS 175

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
             R +T  ++      V IN   M+IG M+       GG     YS+  +       +KD
Sbjct: 176 LFRIVTPYLTIKDIPCVAINHTAMEIGGMYPKEIM--GGGTGILYSASTVFFISKRQVKD 233

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK-SGAWFS 300
              +TG    +K  K++           + +  GI  F  L+++      V K    W++
Sbjct: 234 GTELTGYDFTLKAEKSRTVKEKSTFPITVNFEGGIDPFSGLLEMATDIGFVVKPKAGWYN 293

Query: 301 --FKGQRLGQGRENSKIFLRENIEIAENIESLLRQN-AGLVADSLLQEPAINTKDDADKD 357
             F  +  G+  +  K +  +  +  E    L +        ++  +  AIN+  + D  
Sbjct: 294 RAFLDETTGEMVQEEKAWRAKATDCVEFWGPLFKHAPFREAIENKYKLGAINSIKEVDDA 353

Query: 358 DTD 360
             D
Sbjct: 354 VND 356


>gi|315112887|dbj|BAJ41723.1| recombinase A [Lactobacillus delbrueckii subsp. delbrueckii]
 gi|315112889|dbj|BAJ41724.1| recombinase A [Lactobacillus delbrueckii subsp. delbrueckii]
 gi|315112891|dbj|BAJ41725.1| recombinase A [Lactobacillus delbrueckii]
 gi|315112893|dbj|BAJ41726.1| recombinase A [Lactobacillus delbrueckii]
 gi|315112895|dbj|BAJ41727.1| recombinase A [Lactobacillus delbrueckii]
 gi|315112897|dbj|BAJ41728.1| recombinase A [Lactobacillus delbrueckii]
 gi|315112899|dbj|BAJ41729.1| recombinase A [Lactobacillus delbrueckii subsp. delbrueckii]
 gi|315112901|dbj|BAJ41730.1| recombinase A [Lactobacillus delbrueckii subsp. lactis]
 gi|315112903|dbj|BAJ41731.1| recombinase A [Lactobacillus delbrueckii subsp. lactis]
 gi|315112905|dbj|BAJ41732.1| recombinase A [Lactobacillus delbrueckii subsp. lactis]
 gi|315112907|dbj|BAJ41733.1| recombinase A [Lactobacillus delbrueckii subsp. lactis]
 gi|315112909|dbj|BAJ41734.1| recombinase A [Lactobacillus delbrueckii subsp. lactis]
 gi|315112911|dbj|BAJ41735.1| recombinase A [Lactobacillus delbrueckii subsp. lactis]
 gi|315112915|dbj|BAJ41737.1| recombinase A [Lactobacillus delbrueckii subsp. lactis]
 gi|315112917|dbj|BAJ41738.1| recombinase A [Lactobacillus delbrueckii subsp. lactis]
 gi|315112921|dbj|BAJ41740.1| recombinase A [Lactobacillus delbrueckii subsp. bulgaricus]
 gi|315112923|dbj|BAJ41741.1| recombinase A [Lactobacillus delbrueckii subsp. bulgaricus]
 gi|315112925|dbj|BAJ41742.1| recombinase A [Lactobacillus delbrueckii subsp. bulgaricus]
 gi|315112927|dbj|BAJ41743.1| recombinase A [Lactobacillus delbrueckii subsp. bulgaricus]
 gi|315112929|dbj|BAJ41744.1| recombinase A [Lactobacillus delbrueckii subsp. bulgaricus]
 gi|315112931|dbj|BAJ41745.1| recombinase A [Lactobacillus delbrueckii subsp. bulgaricus]
 gi|315112933|dbj|BAJ41746.1| recombinase A [Lactobacillus delbrueckii subsp. bulgaricus]
 gi|315112935|dbj|BAJ41747.1| recombinase A [Lactobacillus delbrueckii subsp. indicus]
 gi|315112937|dbj|BAJ41748.1| recombinase A [Lactobacillus delbrueckii subsp. delbrueckii]
 gi|315112939|dbj|BAJ41749.1| recombinase A [Lactobacillus delbrueckii subsp. delbrueckii]
 gi|315112941|dbj|BAJ41750.1| recombinase A [Lactobacillus delbrueckii subsp. indicus]
 gi|315112943|dbj|BAJ41751.1| recombinase A [Lactobacillus delbrueckii subsp. indicus]
 gi|315112945|dbj|BAJ41752.1| recombinase A [Lactobacillus delbrueckii subsp. indicus]
 gi|315112947|dbj|BAJ41753.1| recombinase A [Lactobacillus delbrueckii]
 gi|315112949|dbj|BAJ41754.1| recombinase A [Lactobacillus delbrueckii]
 gi|315112951|dbj|BAJ41755.1| recombinase A [Lactobacillus delbrueckii]
 gi|315112953|dbj|BAJ41756.1| recombinase A [Lactobacillus delbrueckii]
 gi|315112955|dbj|BAJ41757.1| recombinase A [Lactobacillus delbrueckii]
 gi|315112957|dbj|BAJ41758.1| recombinase A [Lactobacillus delbrueckii]
 gi|315112961|dbj|BAJ41760.1| recombinase A [Lactobacillus delbrueckii]
 gi|315112963|dbj|BAJ41761.1| recombinase A [Lactobacillus delbrueckii]
 gi|315112965|dbj|BAJ41762.1| recombinase A [Lactobacillus delbrueckii]
          Length = 137

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 89/137 (64%), Positives = 116/137 (84%)

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+  L++SQP+T
Sbjct: 1   VEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDQLILSQPNT 60

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL+ +
Sbjct: 61  GEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGT 120

Query: 190 ISRSKCILVFINQMRMK 206
           I+++K I +FINQ+R K
Sbjct: 121 IAKTKTIAIFINQIREK 137


>gi|309274214|gb|ADO63751.1| recombinase A [Pseudomonas jessenii]
          Length = 143

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 104/143 (72%), Positives = 129/143 (90%)

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+   G+Q
Sbjct: 1   GVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQ 60

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           ARLMSQALRK+T +I  + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR
Sbjct: 61  ARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRR 120

Query: 236 VGSIKDKDSITGNQTRVKVVKNK 258
            G++K+ D + G++TRVKVVKNK
Sbjct: 121 TGAVKEGDEVVGSETRVKVVKNK 143


>gi|158631802|gb|ABW75006.1| RecA [Rhizobium sp. CCBAU 83457]
          Length = 136

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 112/136 (82%), Positives = 128/136 (94%)

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
            ESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQAL
Sbjct: 1   KESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQAL 60

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S 
Sbjct: 61  EITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSN 120

Query: 195 CILVFINQMRMKIGVM 210
            +++FINQ+RMKIGVM
Sbjct: 121 TMVIFINQIRMKIGVM 136


>gi|42766977|gb|AAS45518.1| putative recombinase [Clostridium difficile]
 gi|42766979|gb|AAS45519.1| putative recombinase [Clostridium difficile]
 gi|42766981|gb|AAS45520.1| putative recombinase [Clostridium difficile]
 gi|42766983|gb|AAS45521.1| putative recombinase [Clostridium difficile]
 gi|42766987|gb|AAS45523.1| putative recombinase [Clostridium difficile]
 gi|42766989|gb|AAS45524.1| putative recombinase [Clostridium difficile]
 gi|42766991|gb|AAS45525.1| putative recombinase [Clostridium difficile]
 gi|42766993|gb|AAS45526.1| putative recombinase [Clostridium difficile]
 gi|42766995|gb|AAS45527.1| putative recombinase [Clostridium difficile]
 gi|42766997|gb|AAS45528.1| putative recombinase [Clostridium difficile]
          Length = 126

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 88/123 (71%), Positives = 107/123 (86%)

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           DIIVIDSVAAL P+AEI+GDMG+S  G+QARLMSQALRKLT SI +S C+ +FINQ+R K
Sbjct: 4   DIIVIDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREK 63

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           +G+MFG+PETTTGG ALKFYSSVRLD+R++ +IK  D + G++TRVKVVKNK+A PFKQ 
Sbjct: 64  VGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIGSRTRVKVVKNKVAPPFKQA 123

Query: 267 EFD 269
           EFD
Sbjct: 124 EFD 126


>gi|315112959|dbj|BAJ41759.1| recombinase A [Lactobacillus delbrueckii]
          Length = 137

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 89/137 (64%), Positives = 116/137 (84%)

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+  L++SQP+T
Sbjct: 1   VEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDQLILSQPNT 60

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL+ +
Sbjct: 61  GEEGLQIVDTLISSGAIDIVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGT 120

Query: 190 ISRSKCILVFINQMRMK 206
           I+++K I +FINQ+R K
Sbjct: 121 IAKTKTIAIFINQIREK 137


>gi|116620139|ref|YP_822295.1| RecA domain-containing protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116223301|gb|ABJ82010.1| RecA domain protein [Candidatus Solibacter usitatus Ellin6076]
          Length = 248

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 93/270 (34%), Positives = 152/270 (56%), Gaps = 26/270 (9%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M+  ++ +A+   L+            ++       +     SSG   LD ALG GG P+
Sbjct: 1   MSEEERQRAIWLKLA------------RMAPHSPARDT--CFSSGFQALDEALG-GGLPR 45

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           G++VE YGP   GKTTLA+   A +Q  G TCA++DA+   D+ YA  LG  +  + ++Q
Sbjct: 46  GQMVEFYGPSGCGKTTLAIQIAAHAQAGGLTCAWIDADRTFDAAYAAHLGAAVDRIPVAQ 105

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           PD+ E+ LE+T  L+ SGAVD++++DS AAL P+ E+E  +G    G+ +R++S  LR L
Sbjct: 106 PDSAEEGLEVTRALIDSGAVDLVIVDSAAALVPKLELEAGIGYYSKGLHSRVLSSGLRNL 165

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
             +++R+   +VF+NQ+R +      S ET+ GG  LK +++VRL +  +          
Sbjct: 166 RRALARTGACVVFLNQVRNRPSGG--SGETSAGGPPLKLFAAVRLALTPLE--------- 214

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276
           G + R++V+KNK+A+     E + + G G 
Sbjct: 215 GTRLRLRVLKNKVAAQTSGRELEWVRGSGF 244


>gi|315112913|dbj|BAJ41736.1| recombinase A [Lactobacillus delbrueckii subsp. lactis]
 gi|315112919|dbj|BAJ41739.1| recombinase A [Lactobacillus delbrueckii subsp. lactis]
          Length = 137

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 89/137 (64%), Positives = 116/137 (84%)

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           VEIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D  YA  LGVD+  L++SQP+T
Sbjct: 1   VEIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAENAMDPAYAEALGVDIDQLILSQPNT 60

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           GE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKL+ +
Sbjct: 61  GEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGT 120

Query: 190 ISRSKCILVFINQMRMK 206
           I+++K I +FINQ+R K
Sbjct: 121 IAKTKTIAIFINQIREK 137


>gi|238695193|ref|YP_002922386.1| UvsX RecA-like recombination protein [Enterobacteria phage JS10]
 gi|220029329|gb|ACL78263.1| UvsX RecA-like recombination protein [Enterobacteria phage JS10]
          Length = 390

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 77/363 (21%), Positives = 137/363 (37%), Gaps = 26/363 (7%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGR 68
           KS+ ++A+ S++     K           +F G + V +    L+IALG     G   G 
Sbjct: 5   KSRLIKASTSKMTADLTK---------SKLFNGRDEVPTRIPMLNIALGGALNAGLQSGL 55

Query: 69  IVEIYGPESSGKT--TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
            +    P    KT   L +      +     C F D+E      Y R +GVDL+ ++ + 
Sbjct: 56  TI-FAAPSKHFKTLFGLTMVAAYMKKYPDAICLFYDSEFGASESYFRSMGVDLERVVHTP 114

Query: 127 PDTGEQA---LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP--GMQARLMSQ 181
             + EQ    +      +  G   II IDS+     + E E  + E +     +A+ +  
Sbjct: 115 IQSVEQLKVDMTNQLEEITRGEKVIIFIDSIGNTASKKETEDALNEKVVGDMTRAKSLKS 174

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
             R +T  ++      V IN   M+IG M+       GG     YS+  +       +KD
Sbjct: 175 LFRIVTPYLTIKDIPCVAINHTAMEIGGMYPKEIM--GGGTGILYSASTVFFISKRQVKD 232

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK-SGAWFS 300
              +TG    +K  K++           + +  GI  F  L+++      V K    W++
Sbjct: 233 GTELTGYDFTLKAEKSRTVKEKSTFPITVNFEGGIDPFSGLLEMATDIGFVVKPKAGWYN 292

Query: 301 --FKGQRLGQGRENSKIFLRENIEIAENIESLLRQN-AGLVADSLLQEPAINTKDDADKD 357
             F  +  G+  +  K +  +  +  E    L +        ++  +  AIN+  + D  
Sbjct: 293 RAFLDETTGEMVQEEKSWRAKATDCVEFWGPLFKHAPFREAIENKYKLGAINSIKEVDDA 352

Query: 358 DTD 360
             D
Sbjct: 353 VND 355


>gi|161622538|ref|YP_001595166.1| UvsX RecA-like recombination protein [Enterobacteria phage JS98]
 gi|160331890|gb|AAU29228.2| UvsX RecA-like recombination protein [Enterobacteria phage JS98]
          Length = 390

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 77/363 (21%), Positives = 137/363 (37%), Gaps = 26/363 (7%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGR 68
           KS+ ++A+ S++     K           +F G + V +    L+IALG     G   G 
Sbjct: 5   KSRLIKASTSKMTADLTK---------SKLFNGRDEVPTRIPMLNIALGGALNAGLQSGL 55

Query: 69  IVEIYGPESSGKT--TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
            +    P    KT   L +      +     C F D+E      Y R +GVDL+ ++ + 
Sbjct: 56  TI-FAAPSKHFKTLFGLTMVAAYMKKYPDAICLFYDSEFGASESYFRSMGVDLERVVHTP 114

Query: 127 PDTGEQA---LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP--GMQARLMSQ 181
             + EQ    +      +  G   II IDS+     + E E  + E +     +A+ +  
Sbjct: 115 IQSVEQLKVDMTNQLEEITRGEKVIIFIDSIGNTASKKETEDALNEKVVGDMTRAKSLKS 174

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
             R +T  ++      V IN   M+IG M+       GG     YS+  +       +KD
Sbjct: 175 LFRIVTPYLTIKDIPCVAINHTAMEIGGMYPKEIM--GGGTGILYSASTVFFISKRQVKD 232

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK-SGAWFS 300
              +TG    +K  K++           + +  GI  F  L+++      V K    W++
Sbjct: 233 GTELTGYDFTLKAEKSRTVKEKSTFPITVNFEGGIDPFSGLLEMATDIGFVVKPKAGWYN 292

Query: 301 --FKGQRLGQGRENSKIFLRENIEIAENIESLLRQN-AGLVADSLLQEPAINTKDDADKD 357
             F  +  G+  +  K +  +  +  E    L +        ++  +  AIN+  + D  
Sbjct: 293 RAFLDETTGEMVQEEKAWRAKATDCVEFWGPLFKHAPFREAIENKYKLGAINSIKEVDDA 352

Query: 358 DTD 360
             D
Sbjct: 353 VND 355


>gi|37956371|gb|AAP15360.1| RecA [Geobacter grbiciae]
          Length = 133

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 96/131 (73%), Positives = 118/131 (90%)

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  IS+S C ++FINQ
Sbjct: 3   SGAVDVLVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGIISKSNCCVIFINQ 62

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +RMKIGVMFGSPETTTGGNALKFY+SVRLDIR++ ++K  D++ G++T+VKVVKNK+A P
Sbjct: 63  IRMKIGVMFGSPETTTGGNALKFYASVRLDIRKIATLKQGDAVVGSRTKVKVVKNKVAPP 122

Query: 263 FKQVEFDIMYG 273
           FK+VEFDI YG
Sbjct: 123 FKEVEFDIHYG 133


>gi|213012358|gb|ACJ38745.1| recombination-repair protein [Vibrio harveyi]
          Length = 144

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 100/144 (69%), Positives = 126/144 (87%)

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RS
Sbjct: 1   TLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARS 60

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+
Sbjct: 61  GAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQI 120

Query: 204 RMKIGVMFGSPETTTGGNALKFYS 227
           RMKIGVMFG+PETTTGGNALKFY+
Sbjct: 121 RMKIGVMFGNPETTTGGNALKFYA 144


>gi|66391274|ref|YP_238613.1| ORF019 [Staphylococcus phage Twort]
 gi|62637204|gb|AAX92315.1| ORF019 [Staphylococcus phage Twort]
          Length = 407

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 77/354 (21%), Positives = 152/354 (42%), Gaps = 44/354 (12%)

Query: 13  SKALEAALSQIQR-VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
            K  E  LSQ+     GK   + L S  +  +   ++ +     D  LG GG P GR+ E
Sbjct: 5   KKGQEVDLSQLNTIDLGKEMGLTLLSDTNKADIKNILPTMVPQYDRILG-GGIPLGRLTE 63

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD--- 128
           +YG  +SGK+T A+H    + + G    ++D E   D+    +LGVD+  L   Q     
Sbjct: 64  VYGLNASGKSTFAVHLSRITTQLGVITVWIDIEGTADNRRMEQLGVDVSKLFSIQAGEGR 123

Query: 129 -------TGEQALEITDMLVRSGA------VDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
                  + E   +  +  + +          + + DS+       EI+G +     G++
Sbjct: 124 LKNTVELSIETVGKELEYWIDTFNEKLPGVPILFIWDSLGGTRTDEEIKGGIDTKKLGIR 183

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRM--KIGVMFGSPETTTGGNALKFYSSVRLDI 233
           A    + +  +T  ++ +   ++ INQ R    +   +  P  +TGG A +  +S+R+ +
Sbjct: 184 ASSAQKVINAITPKLNETNTGVLIINQARDNLNMSNPYDDPIKSTGGRAFEHAASLRIKV 243

Query: 234 RRVGSIKD-----KDSITGNQTRVKVVKNKMASPFKQV------EFDIMYG---EGISFF 279
            +   IK      KD  +G+  R++  K+K++ P ++       E+++  G    G+   
Sbjct: 244 NKGAQIKQAKASGKDEYSGHIMRIETKKSKLSRPNQKAEAHLLSEWELSDGTLLNGLDLH 303

Query: 280 GELIDLGVKASIVDKSGAWFSF---KGQRLGQGRENSKIF---LRENIEIAENI 327
             +    V+  ++ K GAW ++    G+ +   +     +   L+E+ E+   +
Sbjct: 304 NVVYQEAVEKGLITK-GAWRNYITLNGEEI---KLRDAEWVPRLKEDYELYLEL 353


>gi|42766985|gb|AAS45522.1| putative recombinase [Clostridium difficile]
          Length = 126

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 87/123 (70%), Positives = 107/123 (86%)

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           DIIVIDSVAAL P+AEI+GDMG+S  G+QARLMSQALRKLT SI +S C+ +FINQ+R K
Sbjct: 4   DIIVIDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREK 63

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           +G+MFG+PETTTGG ALKFYSS+RLD+R++ +IK  D + G++TRVKVVKNK+A PFKQ 
Sbjct: 64  VGIMFGNPETTTGGRALKFYSSIRLDVRKIDTIKQGDKVIGSRTRVKVVKNKVAPPFKQA 123

Query: 267 EFD 269
           EFD
Sbjct: 124 EFD 126


>gi|6694820|gb|AAF25405.1|AF214758_1 RecA protein [Arthrobacter sp. 'SMCC G919']
          Length = 145

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 104/145 (71%), Positives = 121/145 (83%)

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
           H +A +Q+ GG  AF+DAEHALD  YA KLGVD   LL+SQPDTGEQALEI DMLV SG+
Sbjct: 1   HAVANAQRNGGIAAFIDAEHALDPDYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGS 60

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +DIIVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+T  +S++K   +FINQ+R 
Sbjct: 61  LDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLRE 120

Query: 206 KIGVMFGSPETTTGGNALKFYSSVR 230
           KIGV FGSPETTTGG ALKFY+SVR
Sbjct: 121 KIGVFFGSPETTTGGKALKFYASVR 145


>gi|32453528|ref|NP_861734.1| UvsX RecA-like recombination protein [Enterobacteria phage RB69]
 gi|32350347|gb|AAP75946.1| UvsX RecA-like recombination protein [Enterobacteria phage RB69]
          Length = 390

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 68/336 (20%), Positives = 125/336 (37%), Gaps = 25/336 (7%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGR 68
           KS+ ++A+ S++     K           +F   + V +    L+IALG     G   G 
Sbjct: 5   KSRLIKASTSKMTADLTK---------SKLFNNRDEVPTRIPMLNIALGGALNAGLQSGL 55

Query: 69  IVEIYGPESSGKT--TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
            +    P    KT   L +      +     C F D+E      Y R +GVDL  ++ + 
Sbjct: 56  TI-FAAPSKHFKTLFGLTMVAAYMKKYKDAICLFYDSEFGASESYFRSMGVDLDRVVHTP 114

Query: 127 PDTGEQA---LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP--GMQARLMSQ 181
             + EQ    +      +  G   II IDS+     + E E  + E +     +A+ +  
Sbjct: 115 IQSVEQLKVDMTNQLDAIERGDKVIIFIDSIGNTASKKETEDALNEKVVGDMSRAKALKS 174

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
             R +T  ++      V IN   M+IG ++       GG     YS+  +       +K+
Sbjct: 175 LFRIVTPYLTIKDIPCVAINHTAMEIGGLYPKEIM--GGGTGILYSANTVFFISKRQVKE 232

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK-SGAWFS 300
              +TG    +K  K++           + +  GI  F  L+++  +   V K    W++
Sbjct: 233 GTELTGYDFTLKAEKSRTVKEKSTFPITVNFDGGIDPFSGLLEMATEIGFVVKPKAGWYA 292

Query: 301 FK--GQRLGQGRENSKIFLRENIEIAENIESLLRQN 334
            +   +  G+     K +  +  +  E    L +  
Sbjct: 293 REFLDEETGEMIREEKSWRAKATDCVEFWGPLFKHK 328


>gi|730488|sp|P41055|RECA_STRCT RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|416191|emb|CAA53673.1| reca peptidase [Streptomyces cattleya]
          Length = 142

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 102/142 (71%), Positives = 124/142 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL LH +A + + GG+ AF+DAEHALD  YA+KLGVD+ +L++SQPD GEQALEI
Sbjct: 1   SSGKTTLTLHAVANAPRLGGSVAFIDAEHALDPEYAKKLGVDIDSLILSQPDNGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S  G+QARLMSQALRK+TS++++SK  
Sbjct: 61  VDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITSALNQSKTT 120

Query: 197 LVFINQMRMKIGVMFGSPETTT 218
            +FINQ+R KIGVMFGSPETTT
Sbjct: 121 AIFINQLREKIGVMFGSPETTT 142


>gi|98991040|gb|ABF60544.1| RecA [Burkholderia ferrariae]
          Length = 117

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 86/116 (74%), Positives = 99/116 (85%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
            G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT
Sbjct: 2   DGEVVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGT 61

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVIDS
Sbjct: 62  AAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDS 117


>gi|291290256|dbj|BAI83051.1| UvsX RecA-like recombination protein [Enterobacteria phage AR1]
          Length = 393

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 70/331 (21%), Positives = 130/331 (39%), Gaps = 27/331 (8%)

Query: 7   MNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG---IG 62
           M+IVD KS+ ++A+ S++             +    F   +V+ +    L+IA+     G
Sbjct: 1   MSIVDLKSRLIKASTSKMTAEL---------TTSKFFNEKDVIRTKIPMLNIAISGAIDG 51

Query: 63  GFPKGRIVEIYGPESSGKTT--LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           G   G  +   GP    K+   L +     ++     C F D+E  +   Y R +GVD +
Sbjct: 52  GMQSGLTI-FAGPSKHFKSNMSLTMVAAYLNKYPDAVCLFYDSEFGITPAYLRSMGVDPE 110

Query: 121 NLLISQPDTGEQA---LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP--GMQ 175
            ++ +   + EQ    +      +  G   I+ IDS+  +  + E E  + E       +
Sbjct: 111 RVIHTPIQSVEQLKIDMVNQLEAIERGEKVIVFIDSIGNMASKKETEDALNEKSVADMTR 170

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           A+ +    R +T   S      V +N     I  MF     T G      YS+  + I  
Sbjct: 171 AKSLKSLFRIVTPYFSIKNIPCVAVNHTIETI-EMFSKTVMTGGTGV--MYSADTVFIIG 227

Query: 236 VGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK- 294
              IKD   + G Q  + V K++      +   D+ +  GI  +  L+D+ ++   V K 
Sbjct: 228 KRQIKDGSDLQGYQFVLNVEKSRTVKEKSKFFIDVKFDGGIDPYSGLLDMALELGFVVKP 287

Query: 295 SGAWFSFK--GQRLGQGRENSKIFLRENIEI 323
              W++ +   +  G+     K +  ++   
Sbjct: 288 KNGWYAREFLDEETGEMIREEKSWRAKDTNC 318


>gi|330858568|ref|YP_004414943.1| putative UvsX recA-like recombination protein [Shigella phage
           Shfl2]
 gi|327397502|gb|AEA73004.1| putative UvsX recA-like recombination protein [Shigella phage
           Shfl2]
          Length = 393

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 69/331 (20%), Positives = 129/331 (38%), Gaps = 27/331 (8%)

Query: 7   MNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG---IG 62
           M+I D KS+ ++A+ S++             +    F   +V+ +    L+IA+     G
Sbjct: 1   MSIADLKSRLIKASTSKMTAEL---------TTSKFFNEKDVIRTKIPMLNIAISGAIDG 51

Query: 63  GFPKGRIVEIYGPESSGKTT--LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           G   G  +   GP    K+   L +     ++     C F D+E  +   Y R +GVD +
Sbjct: 52  GMQSGLTI-FAGPSKHFKSNMSLTMVAAYLNKYPDAVCLFYDSEFGITPAYLRSMGVDPE 110

Query: 121 NLLISQPDTGEQA---LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP--GMQ 175
            ++ +   + EQ    +      +  G   I+ IDS+  +  + E E  + E       +
Sbjct: 111 RVIHTPIQSVEQLKIDMVNQLEAIERGEKVIVFIDSIGNMASKKETEDALNEKSVADMTR 170

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           A+ +    R +T   S      V +N     I  MF     T G      YS+  + I  
Sbjct: 171 AKSLKSLFRIVTPYFSIKNIPCVAVNHTIETI-EMFSKTVMTGGTGV--MYSADTVFIIG 227

Query: 236 VGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK- 294
              IKD   + G Q  + V K++      +   D+ +  GI  +  L+D+ ++   V K 
Sbjct: 228 KRQIKDGSDLQGYQFVLNVEKSRTVKEKSKFFIDVKFDGGIDPYSGLLDMALELGFVVKP 287

Query: 295 SGAWFSFK--GQRLGQGRENSKIFLRENIEI 323
              W++ +   +  G+     K +  ++   
Sbjct: 288 KNGWYAREFLDEETGEMIREEKSWRAKDTNC 318


>gi|157420096|gb|ABV55541.1| RecA [Acinetobacter rhizosphaerae]
 gi|157420098|gb|ABV55542.1| RecA [Acinetobacter rhizosphaerae]
          Length = 142

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 106/139 (76%), Positives = 123/139 (88%)

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           SGKTT+ L  IAQ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI 
Sbjct: 4   SGKTTMTLQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIA 63

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +  RS C++
Sbjct: 64  DMLVRSGAIDMIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMV 123

Query: 198 VFINQMRMKIGVMFGSPET 216
           +FINQ+RMKIGVMFGSPET
Sbjct: 124 IFINQIRMKIGVMFGSPET 142


>gi|116326262|ref|YP_802982.1| RecA-like recombinase protein [Enterobacteria phage RB32]
 gi|228860974|ref|YP_002853997.1| RecA-like recombinase protein [Enterobacteria phage RB51]
 gi|228861355|ref|YP_002854376.1| RecA-like recombinase protein [Enterobacteria phage RB14]
 gi|115343855|gb|ABI94864.1| RecA-like recombinase protein [Enterobacteria phage RB32]
 gi|227438371|gb|ACP30684.1| RecA-like recombinase protein [Enterobacteria phage RB14]
 gi|227438648|gb|ACP30960.1| RecA-like recombinase protein [Enterobacteria phage RB51]
          Length = 393

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 69/331 (20%), Positives = 129/331 (38%), Gaps = 27/331 (8%)

Query: 7   MNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG---IG 62
           M+I D KS+ ++A+ S++             +    F   +V+ +    L+IA+     G
Sbjct: 1   MSIADLKSRLIKASTSKMTAEL---------TTSKFFNEKDVIRTKIPMLNIAISGAIDG 51

Query: 63  GFPKGRIVEIYGPESSGKTT--LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           G   G  +   GP    K+   L +     ++     C F D+E  +   Y R +GVD +
Sbjct: 52  GMQSGLTI-FAGPSKHFKSNMSLTMVAAYLNKYPDAVCLFYDSEFGITPAYLRSMGVDPE 110

Query: 121 NLLISQPDTGEQA---LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP--GMQ 175
            ++ +   + EQ    +      +  G   I+ IDS+  +  + E E  + E       +
Sbjct: 111 RVIHTPIQSVEQLKIDMVNQLEAIERGEKVIVFIDSIGNMASKKETEDALNEKSVADMTR 170

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           A+ +    R +T   S      V +N     I  MF     T G      YS+  + I  
Sbjct: 171 AKSLKSLFRIVTPYFSIKNIPCVAVNHTIETI-EMFSKTVMTGGTGV--MYSADTVFIIG 227

Query: 236 VGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK- 294
              IKD   + G Q  + V K++      +   D+ +  GI  +  L+D+ ++   V K 
Sbjct: 228 KRQIKDGSDLQGYQFVLNVEKSRTVKEKSKFFIDVKFDGGIDPYSGLLDMALELGFVVKP 287

Query: 295 SGAWFSFK--GQRLGQGRENSKIFLRENIEI 323
              W++ +   +  G+     K +  ++   
Sbjct: 288 KNGWYAREFLDEETGEMIREEKSWRAKDTNC 318


>gi|52630781|gb|AAU84858.1| RecA [Pandoraea sputorum]
          Length = 143

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 106/143 (74%), Positives = 123/143 (86%)

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           IYGPESSGKTTL L  +A+ QK GGTCAF+DAEHALD  YA KLGV +  LLISQPDTGE
Sbjct: 1   IYGPESSGKTTLTLQVVAEMQKIGGTCAFIDAEHALDVGYANKLGVSVPELLISQPDTGE 60

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           QALEI D LVRSG++D+I+IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I 
Sbjct: 61  QALEIADALVRSGSIDLIIIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIK 120

Query: 192 RSKCILVFINQMRMKIGVMFGSP 214
           R  C ++FINQ+ MKIGVMFG+P
Sbjct: 121 RKNCTVIFINQIPMKIGVMFGNP 143


>gi|180050813|gb|ACB87020.1| RecA [Bacteriovorax sp. MNZ1]
          Length = 117

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 80/114 (70%), Positives = 97/114 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +  +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ QK GGT AF+DA
Sbjct: 1   KVPSISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           EHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++DSVAAL
Sbjct: 61  EHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIVDSVAAL 114


>gi|288269487|dbj|BAI68120.1| recombinase A [Lactobacillus sp. NGRI 0130Q]
          Length = 138

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 95/138 (68%), Positives = 120/138 (86%)

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGEQ
Sbjct: 1   YGPESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQ 60

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
            L+ITD LV SGA+DI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +IS+
Sbjct: 61  GLQITDALVTSGAIDIVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISK 120

Query: 193 SKCILVFINQMRMKIGVM 210
           +K I +FINQ+R K+GVM
Sbjct: 121 TKTIAIFINQIREKVGVM 138


>gi|157325096|ref|YP_001468521.1| gp141 [Listeria phage A511]
 gi|66732784|gb|AAY53375.1| gp72 [Listeria phage P100]
 gi|66733104|gb|AAY52922.1| gp141 [Listeria phage A511]
          Length = 414

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 71/286 (24%), Positives = 129/286 (45%), Gaps = 31/286 (10%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
                 E  + + +    LD  LG GG P GR+ EI G  +SGK+TLA+H    + +   
Sbjct: 27  QDSKWAEISDKLPTFIPQLDYILG-GGIPFGRLTEIMGKNASGKSTLAVHLTKVALQLDC 85

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG-----------------EQALEITDM 139
              ++D E   D     +LGVD+  +   QP                    E+   I + 
Sbjct: 86  KVIWIDTEGTADPSRLSQLGVDVNKIFFVQPKKSKNAEVNKEDSITVEFVAERVEAILNA 145

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
              S    +I+ DS+       EIE  +    PG++A+ M+Q    +   +++S C  + 
Sbjct: 146 FSSSEQRIVIIWDSIGHTPSIKEIEQGVAGKQPGIKAKAMAQFATIIAPMVTKSHCAFIG 205

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD---------KDSITGNQT 250
           INQ R ++G MFG+ + + GGNAL  ++S+RL++++   I++          +   G++ 
Sbjct: 206 INQARDEMGSMFGAVD-SPGGNALHHWASLRLEVKQASKIEEPMQNAFGTMDNVYVGHKL 264

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK---ASIVD 293
           RV   K+K+++P +  E  ++   G+ +   +    V      ++ 
Sbjct: 265 RVITKKSKVSTPRQSAEMFLLSASGLQYEENIYRSCVDSKMYGLIK 310


>gi|288269489|dbj|BAI68121.1| recombinase A [Lactobacillus parafarraginis]
          Length = 138

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 94/138 (68%), Positives = 119/138 (86%)

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGEQ
Sbjct: 1   YGPESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQ 60

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
            L+ITD LV SGA+DI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +IS+
Sbjct: 61  GLQITDALVTSGAIDIVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISK 120

Query: 193 SKCILVFINQMRMKIGVM 210
           +K I +FINQ+R K+G M
Sbjct: 121 TKTIAIFINQIREKVGAM 138


>gi|213012502|gb|ACJ38817.1| recombination-repair protein [Vibrio sp. R-680]
          Length = 139

 Score =  123 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 96/139 (69%), Positives = 121/139 (87%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPE 215
            +FINQ+RMKIGVMFG+PE
Sbjct: 121 CIFINQIRMKIGVMFGNPE 139


>gi|32468602|emb|CAD88431.1| RecA protein [Porphyromonas gingivalis]
 gi|32468604|emb|CAD88432.1| RecA protein [Porphyromonas gingivalis]
 gi|32468606|emb|CAD88433.1| RecA protein [Porphyromonas gingivalis]
 gi|32468608|emb|CAD88434.1| RecA protein [Porphyromonas gingivalis]
 gi|32468610|emb|CAD88435.1| RecA protein [Porphyromonas gingivalis]
 gi|32468612|emb|CAD88436.1| RecA protein [Porphyromonas gingivalis]
 gi|32468614|emb|CAD88437.1| RecA protein [Porphyromonas gingivalis]
 gi|32468616|emb|CAD88438.1| RecA protein [Porphyromonas gingivalis]
 gi|32468618|emb|CAD88439.1| RecA protein [Porphyromonas gingivalis]
 gi|32468620|emb|CAD88440.1| RecA protein [Porphyromonas gingivalis]
 gi|32468622|emb|CAD88441.1| RecA protein [Porphyromonas gingivalis]
 gi|32468624|emb|CAD88442.1| RecA protein [Porphyromonas gingivalis]
 gi|32468626|emb|CAD88443.1| RecA protein [Porphyromonas gingivalis]
 gi|32468628|emb|CAD88444.1| RecA protein [Porphyromonas gingivalis]
 gi|32468630|emb|CAD88445.1| RecA protein [Porphyromonas gingivalis]
 gi|32468632|emb|CAD88446.1| RecA protein [Porphyromonas gingivalis]
 gi|32468634|emb|CAD88447.1| RecA protein [Porphyromonas gingivalis]
 gi|32468636|emb|CAD88448.1| RecA protein [Porphyromonas gingivalis]
 gi|32468638|emb|CAD88449.1| RecA protein [Porphyromonas gingivalis]
          Length = 133

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 92/133 (69%), Positives = 112/133 (84%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G+P+GRI+EIYGPESSGKTTLA+H IA++QK GG  A +DAEHA D  YA KLGV++ NL
Sbjct: 1   GYPRGRIIEIYGPESSGKTTLAIHAIAEAQKAGGLAAIIDAEHAFDRTYAEKLGVNVDNL 60

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
            I+QPD GEQALEI + L+RS AVDIIVIDSVAALTP+AEIEG+MG++  G+ ARLMSQA
Sbjct: 61  WIAQPDNGEQALEIAEQLIRSSAVDIIVIDSVAALTPKAEIEGEMGDNKVGLHARLMSQA 120

Query: 183 LRKLTSSISRSKC 195
           LRK+T +IS+S  
Sbjct: 121 LRKMTGAISKSNT 133


>gi|110004765|emb|CAK99099.1| putative reca protein c-terminal truncated [Spiroplasma citri]
          Length = 130

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 68/132 (51%), Positives = 98/132 (74%), Gaps = 6/132 (4%)

Query: 1   MDYRK----EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLD 56
           M+  K    +   +D+ + L+  + +I++ YGKGAIM+LG + ++   IE V + SL LD
Sbjct: 1   MEDNKPVHPQTKPLDQDEILKTVMKEIEKTYGKGAIMKLGDKSNLT--IEAVLTRSLLLD 58

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
            A+G+GG+PKGRI+EI+GPESSGKTTL+LH IA+ QK GG  AF+DAEHALD  YA+K+G
Sbjct: 59  EAIGVGGYPKGRIIEIFGPESSGKTTLSLHAIAEVQKDGGRGAFIDAEHALDPNYAKKIG 118

Query: 117 VDLKNLLISQPD 128
           V++  L+I+QP+
Sbjct: 119 VNIAELIIAQPE 130


>gi|77414041|ref|ZP_00790212.1| recA protein [Streptococcus agalactiae 515]
 gi|77159923|gb|EAO71063.1| recA protein [Streptococcus agalactiae 515]
          Length = 110

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 60/95 (63%), Positives = 78/95 (82%), Gaps = 2/95 (2%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           ++ KAL+ AL  I++ +GKGA+M+LG +    + ++V+SSGSL LDIALG GG+PKGRIV
Sbjct: 18  ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIV 75

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           EIYGPESSGKTT+ALH +AQ+QK GG  AF+DAEH
Sbjct: 76  EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEH 110


>gi|39939203|ref|NP_950969.1| hypothetical protein PAM_717 [Onion yellows phytoplasma OY-M]
 gi|39722312|dbj|BAD04802.1| hypothetical protein [Onion yellows phytoplasma OY-M]
          Length = 117

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 66/119 (55%), Positives = 83/119 (69%), Gaps = 2/119 (1%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           M        LE  +  I++ +GKG+IMQ        +GIE +S+GSL LDIAL IGG+ K
Sbjct: 1   MQNTQNKNDLEDTIKDIEKKFGKGSIMQF--NSKTHKGIESISTGSLSLDIALEIGGYAK 58

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           GRI+EIY PESSGKTTL LH I+++QK GG  AF+DAEHALD  YA+ +GV+L  LLIS
Sbjct: 59  GRIIEIYSPESSGKTTLTLHAISEAQKKGGNVAFIDAEHALDPSYAKAIGVNLDKLLIS 117


>gi|180050807|gb|ACB87017.1| RecA [Bacteriovorax sp. MANZ2]
          Length = 118

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 79/114 (69%), Positives = 97/114 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +  +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ QK GGT AF+DA
Sbjct: 1   KVPSISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           EHALD+ YA KLGV++ N LISQPD+GEQALEI DMLVRS AVD++++DSVAAL
Sbjct: 61  EHALDTYYAEKLGVEVPNTLISQPDSGEQALEIADMLVRSAAVDLLIVDSVAAL 114


>gi|326782556|ref|YP_004323072.1| UvsX RecA-like protein [Synechococcus phage S-SM1]
 gi|310002770|gb|ADO97169.1| UvsX RecA-like protein [Synechococcus phage S-SM1]
          Length = 336

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 70/336 (20%), Positives = 126/336 (37%), Gaps = 27/336 (8%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPE 76
           L  + +  G      +    +  +  + + +GS   +  +     GG P  +I  I G  
Sbjct: 4   LQDVAKEIGNEYAGLVSDGVAAGDTSDFIDTGSYIFNALVSGSIYGGVPSNKITAIAGES 63

Query: 77  SSGKTTLALHTIAQS--QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT----G 130
           S+GKT   L  +             + ++E A+        G+D   ++I    T     
Sbjct: 64  STGKTFFCLGIVQHFLDSNPDAGVIYFESESAISKQMIEDRGIDSSRMMIVPVATIEQFR 123

Query: 131 EQALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEGDMGESLP--GMQARLMSQALR 184
            Q+  I D  +   A D    + V+DS+  L+   EI     +       +++L+  A R
Sbjct: 124 TQSCRILDKYMEQDAADRKPLMFVLDSLGMLSTEKEIADVAADKQVRDMTKSQLIKGAFR 183

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
            LT  + ++   ++  N     IG    + E   GG +   Y+S  +        KD   
Sbjct: 184 VLTLKLGKANVPMLVTNHTYDVIGAYMPTKEM--GGGSGLKYASSTIIYLSKKKEKDGTE 241

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + GN  + K  K+++     QVE  + Y  G+  +  L++LG K  I  K G        
Sbjct: 242 VVGNIIKCKAHKSRLTKENSQVETRLYYDRGLDRYYGLLELGEKYGIFTKRG-----NRI 296

Query: 305 RLGQGRENSKIFLRE-----NIEIAENIESLLRQNA 335
            +G+     K  L +       E+ E ++   RQ  
Sbjct: 297 VIGESTFYPKSILADPTKYFTPEVMEQLDEAARQEF 332


>gi|213012346|gb|ACJ38739.1| recombination-repair protein [Vibrio harveyi]
          Length = 132

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 92/131 (70%), Positives = 117/131 (89%)

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           EQALEI D L RSGA+D +V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++
Sbjct: 2   EQALEICDALARSGAIDFMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 61

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T
Sbjct: 62  KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 121

Query: 251 RVKVVKNKMAS 261
           R+KVVKNK+A+
Sbjct: 122 RIKVVKNKIAA 132


>gi|180050889|gb|ACB87058.1| RecA [Bacteriovorax sp. MANZ1]
          Length = 115

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 82/115 (71%), Positives = 100/115 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G LGLD+ALG+ G P+GRI+E+YGPESSGKTTL LH  A+ QK GGT AF+DAEHAL
Sbjct: 1   ISTGCLGLDLALGVVGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           D+ YA KLGV++ N LISQPD+GEQALEI DMLVR+ AVD++++DSVAALTPRAE
Sbjct: 61  DTYYAEKLGVEVPNTLISQPDSGEQALEIADMLVRTAAVDLLIVDSVAALTPRAE 115


>gi|180050811|gb|ACB87019.1| RecA [Bacteriovorax sp. MANZ3]
          Length = 113

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 79/113 (69%), Positives = 96/113 (84%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +  +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ QK GGT AF+DA
Sbjct: 1   KVPSISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
           EHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++DSVAA
Sbjct: 61  EHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIVDSVAA 113


>gi|325305328|gb|ADZ06012.1| RecA [Aeromonas veronii bv. sobria]
          Length = 135

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 105/135 (77%), Positives = 124/135 (91%)

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEI
Sbjct: 1   EHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEI 60

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+RMKIGVMFGSPETTTGGNAL
Sbjct: 61  EGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNAL 120

Query: 224 KFYSSVRLDIRRVGS 238
           KFY+SVRLDIRR+G+
Sbjct: 121 KFYASVRLDIRRIGA 135


>gi|180050839|gb|ACB87033.1| RecA [Bacteriovorax sp. PS52B]
          Length = 118

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 87/113 (76%), Positives = 98/113 (86%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
             V+S+G LGLD+ALG GG PKGRI+EIYGPESSGKTTL LH  AQ QK GGT AFVDAE
Sbjct: 1   TPVISTGCLGLDLALGAGGIPKGRIIEIYGPESSGKTTLTLHIAAQCQKQGGTVAFVDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           HALD+ YA KLGVD+ N LISQPD+GEQALEITDMLVRSGAVD++++DSVAAL
Sbjct: 61  HALDTTYAAKLGVDIPNTLISQPDSGEQALEITDMLVRSGAVDLLIVDSVAAL 113


>gi|71089108|gb|AAZ23632.1| RecA [uncultured Burkholderia sp.]
          Length = 121

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 82/115 (71%), Positives = 97/115 (84%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
           G   E I+ VS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGT 
Sbjct: 7   GEAVEDIQAVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTA 66

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
           AF+DAEHALD  YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDS
Sbjct: 67  AFIDAEHALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMIVIDS 121


>gi|180050903|gb|ACB87065.1| RecA [Bacteriovorax sp. SAN1]
          Length = 112

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 80/112 (71%), Positives = 96/112 (85%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
             +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ QK GGT AF+DAEH
Sbjct: 1   PSISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           ALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++DSVAAL
Sbjct: 61  ALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIVDSVAAL 112


>gi|1199583|gb|AAC43621.1| RecA-like protein [Spiroplasma citri]
 gi|1586658|prf||2204301A recA gene
          Length = 130

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/132 (50%), Positives = 96/132 (72%), Gaps = 6/132 (4%)

Query: 1   MDYRK----EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLD 56
           M+  K    +   +D+ + L+  + +I++ YGKGAIM+LG + +    IE V + SL LD
Sbjct: 1   MEDNKPVHPQTKPLDQDEILKTVMKEIEKTYGKGAIMKLGDKSNFT--IEAVLTRSLLLD 58

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
            A+G+GG+PKGRI+EI+GPESSGKTTL+LH IA+ QK GG  AF+D EHALD  YA+K+G
Sbjct: 59  EAIGVGGYPKGRIIEIFGPESSGKTTLSLHAIAEVQKDGGRGAFIDVEHALDPNYAKKIG 118

Query: 117 VDLKNLLISQPD 128
           V++  L+I+QP+
Sbjct: 119 VNIAELIIAQPE 130


>gi|180050835|gb|ACB87031.1| RecA [Bacteriovorax sp. PS82B]
          Length = 117

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 85/114 (74%), Positives = 97/114 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
              V+S+G LGLD+ALG+GG PKGRI+EIYGPESSGKTTL LH  AQ  K GGT AFVDA
Sbjct: 3   KTPVISTGCLGLDLALGVGGIPKGRIIEIYGPESSGKTTLTLHIAAQCPKQGGTVAFVDA 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           EHALD+ YA KLGVD+ N LISQPD+GEQALEITDMLV SGAVD++++DSVAAL
Sbjct: 63  EHALDTTYAAKLGVDIPNTLISQPDSGEQALEITDMLVPSGAVDLLIVDSVAAL 116


>gi|196968131|gb|ACG80639.1| recombinase A [Chlamydophila pecorum]
 gi|196968133|gb|ACG80640.1| recombinase A [Chlamydophila pecorum]
 gi|196968135|gb|ACG80641.1| recombinase A [Chlamydophila pecorum]
 gi|196968137|gb|ACG80642.1| recombinase A [Chlamydophila pecorum]
 gi|196968139|gb|ACG80643.1| recombinase A [Chlamydophila pecorum]
 gi|196968141|gb|ACG80644.1| recombinase A [Chlamydophila pecorum]
 gi|196968143|gb|ACG80645.1| recombinase A [Chlamydophila pecorum]
 gi|196968145|gb|ACG80646.1| recombinase A [Chlamydophila pecorum]
 gi|196968147|gb|ACG80647.1| recombinase A [Chlamydophila pecorum]
 gi|196968149|gb|ACG80648.1| recombinase A [Chlamydophila pecorum]
 gi|196968151|gb|ACG80649.1| recombinase A [Chlamydophila pecorum]
 gi|196968153|gb|ACG80650.1| recombinase A [Chlamydophila pecorum]
 gi|196968155|gb|ACG80651.1| recombinase A [Chlamydophila pecorum]
 gi|196968157|gb|ACG80652.1| recombinase A [Chlamydophila pecorum]
 gi|196968159|gb|ACG80653.1| recombinase A [Chlamydophila pecorum]
 gi|196968161|gb|ACG80654.1| recombinase A [Chlamydophila pecorum]
 gi|196968163|gb|ACG80655.1| recombinase A [Chlamydophila pecorum]
 gi|196968165|gb|ACG80656.1| recombinase A [Chlamydophila pecorum]
          Length = 153

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 99/152 (65%), Positives = 126/152 (82%), Gaps = 1/152 (0%)

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD  YA  +GV++ +L+ISQPD GE AL I ++L RSGAVD++VIDSVAAL P++E+
Sbjct: 1   EHALDPSYAALIGVNVDDLMISQPDCGEDALSIAELLARSGAVDVLVIDSVAALVPKSEL 60

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EGD+G+   G+QAR+MSQALRKLTS+++RS+   +FINQ+R KIGV FG+PETTTGG AL
Sbjct: 61  EGDIGDVHVGLQARMMSQALRKLTSTLARSQTCAIFINQIREKIGVSFGNPETTTGGRAL 120

Query: 224 KFYSSVRLDIRRVGSIKDKDSI-TGNQTRVKV 254
           KFYSS+RLDIRR+GSIK  DS   GN+ +VKV
Sbjct: 121 KFYSSIRLDIRRIGSIKSNDSSDIGNRIKVKV 152


>gi|213012408|gb|ACJ38770.1| recombination-repair protein [Vibrio sp. R-619]
          Length = 136

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 94/135 (69%), Positives = 117/135 (86%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLECIAAAQKAGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMF 211
            +FINQ+RMKIGVMF
Sbjct: 121 CIFINQIRMKIGVMF 135


>gi|258677606|gb|ACV87527.1| RecA [uncultured Burkholderia sp.]
          Length = 113

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 84/113 (74%), Positives = 98/113 (86%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF
Sbjct: 1   VVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKIGGTAAF 60

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
           +DAEHALD  YA+KLGV+  +LLISQPDTGEQALEI D LVRSG++D+IVIDS
Sbjct: 61  IDAEHALDVQYAQKLGVNASDLLISQPDTGEQALEIADALVRSGSIDMIVIDS 113


>gi|29566686|ref|NP_818252.1| gp201 [Mycobacterium phage Bxz1]
 gi|109393385|ref|YP_656183.1| gp203 [Mycobacterium phage Catera]
 gi|203457522|ref|YP_002224868.1| gp203 [Mycobacterium phage Rizal]
 gi|203460692|ref|YP_002224426.1| gp205 [Mycobacterium phage Spud]
 gi|281416113|ref|YP_003347849.1| gp199 [Mycobacterium phage ET08]
 gi|29425411|gb|AAN16835.1| gp201 [Mycobacterium phage Bxz1]
 gi|91981207|gb|ABE67922.1| gp203 [Mycobacterium phage Catera]
 gi|197312050|gb|ACH62407.1| gp203 [Mycobacterium phage Rizal]
 gi|197312273|gb|ACH62629.1| gp205 [Mycobacterium phage Spud]
 gi|255927792|gb|ACU41413.1| gp199 [Mycobacterium phage ET08]
 gi|255928080|gb|ACU41699.1| gp204 [Mycobacterium phage LRRHood]
          Length = 362

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 78/302 (25%), Positives = 141/302 (46%), Gaps = 23/302 (7%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
            L   LS +Q  YG+ A+M      +       V SG+L LD A+G+GG P  R++EI G
Sbjct: 6   QLAKLLSDVQNKYGENAVMMAKDMVTYPP----VRSGTLALDFAIGVGGLPSDRVIEIGG 61

Query: 75  PESSGKTTLALHTIAQS--QKTGGTCAFVDAEHALDSIYARKLGVD---LKNLLISQPDT 129
            E +GKTTL+L  + Q    +       +D EH +   +A +L  +      ++ +QPD 
Sbjct: 62  TEGTGKTTLSLLAMQQFLLAQPERFALVLDLEHKMTKDWAVQLVGEELWDDRVIYAQPDH 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
            EQA  +   LV SG +   + DS+     RA IE +  +   G  A  +++  R  ++ 
Sbjct: 122 VEQATNMYSDLVGSGQICFALFDSIGGAAVRAGIEKEAEKVQVGGNANAITKFARLASNF 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK------DKD 243
            ++ +C+ V  NQ   ++ +       T GGN  K    +R+ ++     K       + 
Sbjct: 182 SAKYRCLTVGTNQE--RVDMEGFRRYMTPGGNGWKHACILRIRLKASTQDKVETVVNGEK 239

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIM------YGEGISFFGELIDLGVKASIVDKSGA 297
            + G +   ++VKN++A+P +   + +       YG GI    E++ L +   ++ +  +
Sbjct: 240 MVVGRKIHAQIVKNQLAAPGRSAWWWMYHVPTEEYGFGIDTLDEIVRLAILTGVIKQRVS 299

Query: 298 WF 299
           ++
Sbjct: 300 YY 301


>gi|213012330|gb|ACJ38731.1| recombination-repair protein [Vibrio alginolyticus]
          Length = 142

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 94/142 (66%), Positives = 120/142 (84%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTITLELIAAAQRQGKTCAFIDAEHALDPVYAKKLGVEIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V    AALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+
Sbjct: 61  CDALARSGAIDVMVSTLSAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120

Query: 197 LVFINQMRMKIGVMFGSPETTT 218
            +FINQ+RMKIGVMFG+PETTT
Sbjct: 121 CIFINQIRMKIGVMFGNPETTT 142


>gi|90569103|gb|ABD94442.1| DNA strand exchange and recombination protein [Sinorhizobium
           medicae]
 gi|90569111|gb|ABD94446.1| DNA strand exchange and recombination protein [Sinorhizobium
           medicae]
 gi|90569115|gb|ABD94448.1| DNA strand exchange and recombination protein [Sinorhizobium
           medicae]
          Length = 109

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 94/109 (86%), Positives = 101/109 (92%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           GLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYAR
Sbjct: 1   GLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYAR 60

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           KLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAE
Sbjct: 61  KLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAE 109


>gi|77167163|gb|ABA62556.1| recombinase [Clostridium perfringens]
 gi|77167165|gb|ABA62557.1| recombinase [Clostridium perfringens]
 gi|77167167|gb|ABA62558.1| recombinase [Clostridium perfringens]
 gi|77167169|gb|ABA62559.1| recombinase [Clostridium perfringens]
 gi|77167171|gb|ABA62560.1| recombinase [Clostridium perfringens]
 gi|77167173|gb|ABA62561.1| recombinase [Clostridium perfringens]
 gi|77167175|gb|ABA62562.1| recombinase [Clostridium perfringens]
 gi|77167177|gb|ABA62563.1| recombinase [Clostridium perfringens]
 gi|77167179|gb|ABA62564.1| recombinase [Clostridium perfringens]
 gi|77167181|gb|ABA62565.1| recombinase [Clostridium perfringens]
 gi|77167183|gb|ABA62566.1| recombinase [Clostridium perfringens]
 gi|77167185|gb|ABA62567.1| recombinase [Clostridium perfringens]
 gi|77167187|gb|ABA62568.1| recombinase [Clostridium perfringens]
 gi|77167189|gb|ABA62569.1| recombinase [Clostridium perfringens]
          Length = 120

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 82/120 (68%), Positives = 103/120 (85%)

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRKLT +I++S C+++FINQ+R K+G+MFG+PETT GG AL
Sbjct: 1   EGEMGDSHVGLQARLMSQALRKLTGTINKSNCVVIFINQLREKVGIMFGNPETTPGGRAL 60

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+SVR+DIRR+ SIK  D ITGN+TRVK+VKNK+A PFKQ EFDIMY EGIS  G ++
Sbjct: 61  KFYASVRMDIRRIDSIKQGDGITGNRTRVKIVKNKVAPPFKQAEFDIMYNEGISKEGNIV 120


>gi|203459048|ref|YP_002224204.1| gp205 [Mycobacterium phage ScottMcG]
 gi|204305831|ref|YP_002224648.1| gp204 [Mycobacterium phage Cali]
 gi|197312495|gb|ACH62850.1| gp205 [Mycobacterium phage ScottMcG]
 gi|197312804|gb|ACH63157.1| gp204 [Mycobacterium phage Cali]
          Length = 362

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 78/302 (25%), Positives = 141/302 (46%), Gaps = 23/302 (7%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
            L   LS +Q  YG+ A+M      +       V SG+L LD A+G+GG P  R++EI G
Sbjct: 6   QLAKLLSDVQNKYGENAVMMAKDMVTYPP----VRSGTLALDFAIGVGGLPSDRVIEIGG 61

Query: 75  PESSGKTTLALHTIAQS--QKTGGTCAFVDAEHALDSIYARKLGVD---LKNLLISQPDT 129
            E +GKTTL+L  + Q    +       +D EH +   +A +L  +      ++ +QPD 
Sbjct: 62  TEGTGKTTLSLLAMQQFLLAQPERFALVLDLEHKMTKDWAVQLVGEELWDDRVIYAQPDH 121

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
            EQA  +   LV SG +   + DS+     RA IE +  +   G  A  +++  R  ++ 
Sbjct: 122 VEQATNMYSDLVGSGQICFALFDSIGGAAVRAGIEKEAEKVQVGGNANAITKFARLASNF 181

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK------DKD 243
            ++ +C+ V  NQ   ++ +       T GGN  K    +R+ ++     K       + 
Sbjct: 182 SAKYRCLTVGTNQE--RVDMEGFRRYMTPGGNGWKHACILRIRLKASTQDKVETVVNGEK 239

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIM------YGEGISFFGELIDLGVKASIVDKSGA 297
            + G +   ++VKN++A+P +   + +       YG GI    E++ L +   ++ +  +
Sbjct: 240 MVVGRKIHAQIVKNQLAAPGRSAWWWMYHVPTEEYGFGIDTLDEIVRLAILTGVIKQRVS 299

Query: 298 WF 299
           ++
Sbjct: 300 YY 301


>gi|180050805|gb|ACB87016.1| RecA [Bacteriovorax sp. SAN4]
          Length = 110

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 80/110 (72%), Positives = 96/110 (87%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ QK GGT AF+DAEHAL
Sbjct: 1   ISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           D+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++DSVAAL
Sbjct: 61  DTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIVDSVAAL 110


>gi|90569101|gb|ABD94441.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|90569105|gb|ABD94443.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|90569109|gb|ABD94445.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|90569113|gb|ABD94447.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|90569117|gb|ABD94449.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|90569119|gb|ABD94450.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|126680999|gb|ABO26554.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|169792009|gb|ACA80308.1| recombination protein A [Sinorhizobium meliloti]
          Length = 109

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 94/109 (86%), Positives = 101/109 (92%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           GLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YAR
Sbjct: 1   GLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYAR 60

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           KLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VIDSVAAL PRAE
Sbjct: 61  KLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVIDSVAALVPRAE 109


>gi|179745304|gb|ACB86879.1| RecA [Burkholderia sp. NGR190]
          Length = 111

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 84/111 (75%), Positives = 96/111 (86%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK GGT AF+
Sbjct: 1   VEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFI 60

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRSG++D+IVID
Sbjct: 61  DAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVID 111


>gi|90569107|gb|ABD94444.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|126681001|gb|ABO26555.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
 gi|310697315|gb|ADP06593.1| DNA strand exchange and recombination protein [Sinorhizobium
           meliloti]
          Length = 109

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 95/109 (87%), Positives = 101/109 (92%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           GLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YAR
Sbjct: 1   GLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYAR 60

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           KLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VIDSVAAL PRAE
Sbjct: 61  KLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVIDSVAALVPRAE 109


>gi|309799370|ref|ZP_07693613.1| protein RecA [Streptococcus infantis SK1302]
 gi|308117037|gb|EFO54470.1| protein RecA [Streptococcus infantis SK1302]
          Length = 113

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 53/92 (57%), Positives = 69/92 (75%), Gaps = 2/92 (2%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            D+ KAL  AL  I++ +GKG+IM+LG +    + ++V+SSGSL LDIALG GG+PKGRI
Sbjct: 18  ADREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRI 75

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           +EIYGPESSGKTT+ALH +AQ+QK    C   
Sbjct: 76  IEIYGPESSGKTTVALHAVAQAQKRRRNCCLY 107


>gi|61806057|ref|YP_214417.1| UvsX RecA-like protein [Prochlorococcus phage P-SSM2]
 gi|61374566|gb|AAX44563.1| UvsX RecA-like protein [Prochlorococcus phage P-SSM2]
 gi|265525269|gb|ACY76066.1| recombination and repair protein UvsX [Prochlorococcus phage
           P-SSM2]
          Length = 335

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 79/359 (22%), Positives = 151/359 (42%), Gaps = 53/359 (14%)

Query: 1   MDYRKEM--NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIA 58
           MD+ KE+   I D+   + A + + +R    G+ +  G           + SGS+     
Sbjct: 1   MDFLKEIVKEIGDEYTQVAADIQENERFIDTGSYIFNG-----------LVSGSI----- 44

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS--QKTGGTCAFVDAEHALDSIYARKLG 116
              GG    RI  I G  S+GKT  +L  +         G C + D E A++       G
Sbjct: 45  --FGGVSSSRITAIAGESSTGKTYFSLAVVKNFLDNNPDGYCLYFDTEAAVNKGLLESRG 102

Query: 117 VDLKNLLISQPDTGEQALEITDMLVR--------SGAVDIIVIDSVAALTPRAEIEGDMG 168
           +D+  L++    T E+        V              + V+DS+  L+   EI   + 
Sbjct: 103 IDMNRLVVVNVVTIEEFRSKALRAVDIYLKTSEEERKPCMFVLDSLGMLSTEKEIRDALD 162

Query: 169 ESLP--GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           +       +++L+  A R LT  + ++   L+  N     IG  +   +   GG+ LK+ 
Sbjct: 163 DKQVRDMTKSQLVKGAFRMLTLKLGQANIPLIVTNHTYDVIGS-YVPTKEMGGGSGLKYA 221

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE-GISFFGELIDL 285
           +S  + + +    KD+  + GN  + K  K++++   K+V+  + Y E G+  +  L++L
Sbjct: 222 ASTIIYLSKK-KEKDQKEVIGNLIKAKTHKSRLSKENKEVQIRLYYDERGLDRYYGLLEL 280

Query: 286 GVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE---NI------EIAENIESLLRQNA 335
           G      +  G W +  G+    G+   KI+ +E   N       +I E ++++ +++ 
Sbjct: 281 G------EIGGMWKNVAGRYEMNGK---KIYAKEILKNPTEYFTDDIMEQLDNIAKEHF 330


>gi|313711498|emb|CBJ05150.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711608|emb|CBJ05205.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711666|emb|CBJ05234.1| recombinase A [Propionibacterium freudenreichii]
          Length = 104

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 44/85 (51%), Positives = 59/85 (69%)

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
            PFKQ EFDI+YG+GIS  G LID+GV A IV K+GAWF++   +LGQG+EN++ FL  +
Sbjct: 2   PPFKQAEFDILYGKGISREGSLIDMGVDAGIVRKAGAWFTYGDDQLGQGKENARTFLITH 61

Query: 321 IEIAENIESLLRQNAGLVADSLLQE 345
            E+A +IE  +R   GL A   + E
Sbjct: 62  PEVASDIEHKIRVKLGLDASDEVPE 86


>gi|213012418|gb|ACJ38775.1| recombination-repair protein [Vibrio sinaloensis]
          Length = 130

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 91/130 (70%), Positives = 113/130 (86%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL L  IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            D L RSGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++++S C+
Sbjct: 61  CDALARSGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLNKSNCM 120

Query: 197 LVFINQMRMK 206
            +FINQ+RMK
Sbjct: 121 CIFINQIRMK 130


>gi|313711490|emb|CBJ05146.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711494|emb|CBJ05148.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711500|emb|CBJ05151.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711502|emb|CBJ05152.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711504|emb|CBJ05153.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711508|emb|CBJ05155.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711510|emb|CBJ05156.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711516|emb|CBJ05159.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711518|emb|CBJ05160.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711526|emb|CBJ05164.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711528|emb|CBJ05165.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711530|emb|CBJ05166.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711532|emb|CBJ05167.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711536|emb|CBJ05169.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711538|emb|CBJ05170.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711540|emb|CBJ05171.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711542|emb|CBJ05172.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711544|emb|CBJ05173.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711548|emb|CBJ05175.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711550|emb|CBJ05176.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711556|emb|CBJ05179.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711558|emb|CBJ05180.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711560|emb|CBJ05181.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711562|emb|CBJ05182.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711564|emb|CBJ05183.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711566|emb|CBJ05184.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711570|emb|CBJ05186.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711572|emb|CBJ05187.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711582|emb|CBJ05192.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711584|emb|CBJ05193.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711586|emb|CBJ05194.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711596|emb|CBJ05199.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711598|emb|CBJ05200.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711600|emb|CBJ05201.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711604|emb|CBJ05203.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711614|emb|CBJ05208.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711618|emb|CBJ05210.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711620|emb|CBJ05211.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711630|emb|CBJ05216.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711632|emb|CBJ05217.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711634|emb|CBJ05218.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711638|emb|CBJ05220.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711644|emb|CBJ05223.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711650|emb|CBJ05226.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711652|emb|CBJ05227.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711654|emb|CBJ05228.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711656|emb|CBJ05229.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711660|emb|CBJ05231.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711664|emb|CBJ05233.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711670|emb|CBJ05236.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711672|emb|CBJ05237.1| recombinase A [Propionibacterium freudenreichii]
 gi|313713072|emb|CBJ05244.1| recombinase A [Propionibacterium freudenreichii]
 gi|313713686|emb|CBJ05245.1| recombinase A [Propionibacterium freudenreichii]
 gi|313713688|emb|CBJ05246.1| recombinase A [Propionibacterium freudenreichii]
 gi|313713690|emb|CBJ05247.1| recombinase A [Propionibacterium freudenreichii]
 gi|313713692|emb|CBJ05248.1| recombinase A [Propionibacterium freudenreichii]
 gi|313713694|emb|CBJ05249.1| recombinase A [Propionibacterium freudenreichii]
 gi|313713696|emb|CBJ05250.1| recombinase A [Propionibacterium freudenreichii]
 gi|313713698|emb|CBJ05251.1| recombinase A [Propionibacterium freudenreichii]
 gi|313713704|emb|CBJ05254.1| recombinase A [Propionibacterium freudenreichii]
 gi|313713706|emb|CBJ05255.1| recombinase A [Propionibacterium freudenreichii]
 gi|313713708|emb|CBJ05256.1| recombinase A [Propionibacterium freudenreichii]
 gi|313713712|emb|CBJ05258.1| recombinase A [Propionibacterium freudenreichii]
          Length = 104

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 44/85 (51%), Positives = 59/85 (69%)

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
            PFKQ EFDI+YG+GIS  G LID+GV A IV K+GAWF++   +LGQG+EN++ FL  +
Sbjct: 2   PPFKQAEFDILYGKGISREGSLIDMGVDAGIVRKAGAWFTYGDDQLGQGKENARTFLITH 61

Query: 321 IEIAENIESLLRQNAGLVADSLLQE 345
            E+A +IE  +R   GL A   + E
Sbjct: 62  PEVASDIEHKIRVKLGLDASDEVPE 86


>gi|180050803|gb|ACB87015.1| RecA [Bacteriovorax sp. MNZ3]
          Length = 114

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 79/114 (69%), Positives = 96/114 (84%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
             +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ QK GGT AF+DAEH
Sbjct: 1   PSISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           ALD+ YA KLGV++ N LISQPD+GEQALEI DMLVRS AVD++++D VAAL P
Sbjct: 61  ALDTYYAEKLGVEVPNTLISQPDSGEQALEIADMLVRSAAVDLLMVDCVAALLP 114


>gi|77167191|gb|ABA62570.1| recombinase [Clostridium perfringens]
          Length = 120

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 81/120 (67%), Positives = 103/120 (85%)

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           EG+MG+S  G+QARLMSQALRKLT +I++S C+++FINQ+R K+G+MFG+PETT GG AL
Sbjct: 1   EGEMGDSHVGLQARLMSQALRKLTGTINKSNCVVIFINQLREKVGIMFGNPETTPGGRAL 60

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+SVR+DIRR+ SIK  D ITGN+TRVK+VKNK+A PFKQ +FDIMY EGIS  G ++
Sbjct: 61  KFYASVRMDIRRIDSIKQGDGITGNRTRVKIVKNKVAPPFKQADFDIMYNEGISKEGNIV 120


>gi|313711668|emb|CBJ05235.1| recombinase A [Propionibacterium freudenreichii]
          Length = 104

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 44/85 (51%), Positives = 59/85 (69%)

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
            PFKQ EFDI+YG+GIS  G LID+GV A IV K+GAWF++   +LGQG+EN++ FL  +
Sbjct: 2   PPFKQAEFDILYGKGISREGSLIDMGVDAGIVRKAGAWFTYGDDQLGQGKENARTFLITH 61

Query: 321 IEIAENIESLLRQNAGLVADSLLQE 345
            E+A +IE  +R   GL A   + E
Sbjct: 62  PEVASDIEHKIRVKLGLDASDEVPE 86


>gi|159461915|gb|ABW96968.1| recombinase A [Burkholderia ubonensis]
 gi|159461917|gb|ABW96969.1| recombinase A [Burkholderia ubonensis]
 gi|159461919|gb|ABW96970.1| recombinase A [Burkholderia ubonensis]
 gi|159461921|gb|ABW96971.1| recombinase A [Burkholderia ubonensis]
 gi|159461923|gb|ABW96972.1| recombinase A [Burkholderia ubonensis]
          Length = 112

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 80/110 (72%), Positives = 91/110 (82%), Gaps = 1/110 (0%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           ++G  G   E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L  IA+ QK
Sbjct: 1   RMGD-GEATEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQK 59

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD LVRS
Sbjct: 60  LGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRS 109


>gi|166714602|gb|ABY88032.1| RecA [Stenotrophomonas sp. LMG 10996]
          Length = 117

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 81/117 (69%), Positives = 98/117 (83%), Gaps = 2/117 (1%)

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           RKLT +I RS  +++FINQ+RMKIGVM    SPETTTGGNALKFY+SVRLDIRR+G+IK 
Sbjct: 1   RKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKK 60

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
            D I GNQT++KVVKNK+A PFKQV  +I+YGEGIS  GELID+GV A +V+K+GAW
Sbjct: 61  GDEIIGNQTKIKVVKNKLAPPFKQVITEILYGEGISREGELIDMGVDAKLVEKAGAW 117


>gi|56693101|ref|YP_164688.1| recombinase A [Lactobacillus phage LP65]
 gi|54633602|gb|AAV35873.1| recombinase A [Lactobacillus phage LP65]
          Length = 405

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 80/324 (24%), Positives = 138/324 (42%), Gaps = 31/324 (9%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPK-GRIVEIYGPESSGKTTLALHTIAQSQKTG 95
           S        + + +    LD  L + G P  GR+ E++G  SSGK+TL    +  + K  
Sbjct: 23  SDTDQGRVKDYIPTLIPALDKNL-VSGIPSSGRVTEVFGLPSSGKSTLMGLVMKNALKMN 81

Query: 96  GTCAFVDAEHALDSIYARKLGVDLKNLLISQPD-------TGEQALEITDMLVR------ 142
               + D E  +DS     LGVD   ++   P+       T     EIT+ +V       
Sbjct: 82  VIPIYFDVEETMDSERLEGLGVDPSKVITVTPEINKDNTVTPLYIEEITNYIVNMAAKIH 141

Query: 143 ---SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
              S    + +IDSV     + E   D   +  G QA+ ++   RK+ +++S +  +L+ 
Sbjct: 142 SQSSELTSMFIIDSVGFTQSKLEANTDSESATVGQQAKALAIMARKVQANLSYNNGMLIG 201

Query: 200 INQMR--MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKDSITGNQTRVKV 254
           +NQ R  MK      +   + GG   + ++S RL I++  +IK      +  G  T+V V
Sbjct: 202 LNQGRDDMKAPNPKYAQTKSLGGKGWEHFTSSRLRIQKTTAIKMHNSDKNAVGFDTKVTV 261

Query: 255 VKNKMASPFKQV-EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF---KGQRL-GQG 309
           VK+K+           ++   G      +   GV   I+  SG W+++    G+++  QG
Sbjct: 262 VKSKVGDNVTDAVTIKLLGARGFDRETNIFYGGVDEGIIKGSG-WYTYVNDDGEQIKKQG 320

Query: 310 RENSKIFLR--ENIEIAENIESLL 331
             +   +L+  E  E A  I   +
Sbjct: 321 WVDFVSYLKSDEGKETANEIWRKV 344


>gi|326782913|ref|YP_004323311.1| UvsX RecA-like protein [Prochlorococcus phage P-RSM4]
 gi|310004172|gb|ADO98566.1| UvsX RecA-like protein [Prochlorococcus phage P-RSM4]
          Length = 336

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 73/339 (21%), Positives = 135/339 (39%), Gaps = 33/339 (9%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEI 72
           L+  +S+I   Y  G +       S  +  + + +GS   +  +     GG P  +I  I
Sbjct: 4   LKTVVSEIGNEYA-GLV---SDGVSAGDTKDYIDTGSYVFNALVSGSIYGGVPSNKITAI 59

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTC--AFVDAEHALDSIYARKLGVDLKNLLISQPDT- 129
            G  S+GKT   L  +     +       + ++E A+        G+D   ++I    T 
Sbjct: 60  AGESSTGKTFFCLGIVQHFLDSDPDAGVIYFESESAISKQMIVDRGIDADRMMIVPVSTI 119

Query: 130 ---GEQALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEGDMGESLP--GMQARLMS 180
                Q+  I D  +     D    + V+DS+  L    E+E    +       +++L+ 
Sbjct: 120 EEFRTQSCRILDKYMEQNESDRKPMMFVLDSLGMLASNKEVEDVANDKNVRDMTKSQLIK 179

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
            A R LT  + ++   ++  N     IG  +   +   GG+ LK+ SS  + + +    K
Sbjct: 180 GAFRVLTLKLGKANVPMLVTNHTYDVIGS-YIPTKEMGGGSGLKYASSTIVYLSKK-KEK 237

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D   + GN  + K  K+++      VE  + Y  G+  +  L++LG K  +       F+
Sbjct: 238 DGTEVVGNIIKCKAQKSRLTKENSIVETRLYYDRGLDRYYGLLELGEKHGV-------FT 290

Query: 301 FKGQRLGQGRENS--KIFLRENIE--IAENIESLLRQNA 335
            KG R+  G  +   K  L +  E    + +   L + A
Sbjct: 291 RKGNRIMVGETSVYPKSILAD-PEKYFTDEVMEALDEAA 328


>gi|180050809|gb|ACB87018.1| RecA [Bacteriovorax sp. MANZ5]
          Length = 113

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 78/110 (70%), Positives = 95/110 (86%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH  A+ QK GGT AF+DAEHAL
Sbjct: 1   ISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEHAL 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           D+ YA KLGV++ N LISQPD+GEQALEI DMLV S AVD++++DSVAAL
Sbjct: 61  DTYYAEKLGVEVPNTLISQPDSGEQALEIADMLVGSAAVDLLIVDSVAAL 110


>gi|78271397|emb|CAJ20015.1| recombinase [Erwinia amylovora]
 gi|84618143|emb|CAJ20045.1| recombinase A [Erwinia pyrifoliae]
 gi|84618149|emb|CAJ20047.1| recombinase A [Erwinia tasmaniensis Et1/99]
 gi|119658651|emb|CAL22717.1| DNA recombinase A [Erwinia tasmaniensis]
 gi|221360422|emb|CAR92468.1| recombinase A [Erwinia pyrifoliae]
 gi|221360424|emb|CAR92469.1| recombinase A [Erwinia pyrifoliae]
 gi|221360426|emb|CAR92470.1| recombinase A [Erwinia pyrifoliae]
          Length = 133

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 97/133 (72%), Positives = 118/133 (88%)

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           CAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAAL
Sbjct: 1   CAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAAL 60

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
           TP+AEIEG++G+S  G+ AR+MSQA+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETT
Sbjct: 61  TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNSGTLLIFINQIRMKIGVMFGNPETT 120

Query: 218 TGGNALKFYSSVR 230
           TGGNALKFY+SVR
Sbjct: 121 TGGNALKFYASVR 133


>gi|42540761|gb|AAS19281.1| RecA [uncultured delta proteobacterium]
          Length = 136

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 95/135 (70%), Positives = 112/135 (82%)

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
            G    GKTTLALH +A++ KTGG  AFVDAEHALD  YARKLGV   +LL+SQPDTGEQ
Sbjct: 2   TGRSRRGKTTLALHIVAEAMKTGGIAAFVDAEHALDIGYARKLGVKTDDLLVSQPDTGEQ 61

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEI + LVRSGA+D++V+DSVAAL P+AEIEGDMG+S  G+QARLMSQALRKLT  IS+
Sbjct: 62  ALEIAETLVRSGAIDVLVVDSVAALVPKAEIEGDMGDSHMGLQARLMSQALRKLTGIISK 121

Query: 193 SKCILVFINQMRMKI 207
           S C ++FINQ+RMKI
Sbjct: 122 SNCCVIFINQIRMKI 136


>gi|105959019|gb|ABF81596.1| RecA-like protein [Anaplasma phagocytophilum]
          Length = 85

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/88 (56%), Positives = 68/88 (77%), Gaps = 3/88 (3%)

Query: 1  MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
          M   K+ +  DK +A++AA+ QI+R +G+G+IM+L  Q S  E +E VS+GS+ LD ALG
Sbjct: 1  MVELKD-SPSDKQRAVDAAIGQIERAFGRGSIMRL--QNSPVEAVECVSTGSIALDAALG 57

Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTI 88
          +GG P+GRI+EI+GPESSGKTTLALH I
Sbjct: 58 VGGLPRGRIIEIFGPESSGKTTLALHVI 85


>gi|119658649|emb|CAL22716.1| DNA recombinase A [Erwinia tasmaniensis]
          Length = 133

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 96/133 (72%), Positives = 117/133 (87%)

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           CAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAAL
Sbjct: 1   CAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEIRDALARSGAVDVIIVDSVAAL 60

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
           TP+AEIEG++G+S  G+ A +MSQA+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETT
Sbjct: 61  TPKAEIEGEIGDSHMGLAACMMSQAMRKLAGNLKNSGTLLIFINQIRMKIGVMFGNPETT 120

Query: 218 TGGNALKFYSSVR 230
           TGGNALKFY+SVR
Sbjct: 121 TGGNALKFYASVR 133


>gi|42540769|gb|AAS19285.1| RecA [uncultured delta proteobacterium]
          Length = 138

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 93/135 (68%), Positives = 111/135 (82%)

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
            G    GKTTLALH +A++QK G   AFVDAEHALD  YARKLGV   +LL+SQPDTGEQ
Sbjct: 4   TGRSRRGKTTLALHIVAEAQKLGSIAAFVDAEHALDIGYARKLGVKTDDLLVSQPDTGEQ 63

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEI + LVRSGA+D++V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  IS+
Sbjct: 64  ALEIAETLVRSGAIDVLVVDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLTGIISK 123

Query: 193 SKCILVFINQMRMKI 207
           S C ++FINQ+RMKI
Sbjct: 124 SNCCVIFINQIRMKI 138


>gi|180050879|gb|ACB87053.1| RecA [Bacteriovorax sp. T4]
          Length = 144

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 97/144 (67%), Positives = 115/144 (79%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM+L +  +  E I  +S+G LGLD+ LGIGG PKGRI+EIYGPESSGKTTL LH  A+
Sbjct: 1   SIMKLDADSNTPEKIPAISTGCLGLDLGLGIGGVPKGRIIEIYGPESSGKTTLTLHIAAE 60

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AFVDAEHALD++YA  LGVD+ N LISQPD+GEQALEI DMLVRSGAVD+++
Sbjct: 61  CQKEGGTVAFVDAEHALDTVYASNLGVDIPNTLISQPDSGEQALEIADMLVRSGAVDLLI 120

Query: 151 IDSVAALTPRAEIEGDMGESLPGM 174
           +DSVAALTPRAE+EG  G    G 
Sbjct: 121 VDSVAALTPRAELEGRHGRHTLGS 144


>gi|313711492|emb|CBJ05147.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711496|emb|CBJ05149.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711506|emb|CBJ05154.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711512|emb|CBJ05157.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711514|emb|CBJ05158.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711520|emb|CBJ05161.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711522|emb|CBJ05162.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711524|emb|CBJ05163.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711534|emb|CBJ05168.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711546|emb|CBJ05174.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711552|emb|CBJ05177.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711554|emb|CBJ05178.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711568|emb|CBJ05185.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711574|emb|CBJ05188.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711576|emb|CBJ05189.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711578|emb|CBJ05190.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711580|emb|CBJ05191.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711588|emb|CBJ05195.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711590|emb|CBJ05196.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711592|emb|CBJ05197.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711594|emb|CBJ05198.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711602|emb|CBJ05202.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711606|emb|CBJ05204.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711610|emb|CBJ05206.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711612|emb|CBJ05207.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711616|emb|CBJ05209.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711622|emb|CBJ05212.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711624|emb|CBJ05213.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711626|emb|CBJ05214.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711628|emb|CBJ05215.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711636|emb|CBJ05219.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711640|emb|CBJ05221.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711642|emb|CBJ05222.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711646|emb|CBJ05224.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711648|emb|CBJ05225.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711658|emb|CBJ05230.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711662|emb|CBJ05232.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711674|emb|CBJ05238.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711676|emb|CBJ05239.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711678|emb|CBJ05240.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711680|emb|CBJ05241.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711682|emb|CBJ05242.1| recombinase A [Propionibacterium freudenreichii]
 gi|313711684|emb|CBJ05243.1| recombinase A [Propionibacterium freudenreichii]
 gi|313713700|emb|CBJ05252.1| recombinase A [Propionibacterium freudenreichii]
 gi|313713702|emb|CBJ05253.1| recombinase A [Propionibacterium freudenreichii]
 gi|313713710|emb|CBJ05257.1| recombinase A [Propionibacterium freudenreichii]
          Length = 104

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/85 (51%), Positives = 59/85 (69%)

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
            PFKQ EFDI+YG+GIS  G LID+GV A IV K+GAWF++   +LGQG+EN++ FL  +
Sbjct: 2   PPFKQAEFDILYGKGISREGSLIDMGVDAGIVRKAGAWFTYGDDQLGQGKENARTFLITH 61

Query: 321 IEIAENIESLLRQNAGLVADSLLQE 345
            E+A +IE  +R   GL A   + E
Sbjct: 62  PEVASDIEHEIRVKLGLDASDEVPE 86


>gi|42540765|gb|AAS19283.1| RecA [uncultured delta proteobacterium]
          Length = 146

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 94/135 (69%), Positives = 111/135 (82%)

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
            G    GKTTLALH +A++ KTGG  AFVDAEHALD  YARKLGV   +LL+SQPDTGEQ
Sbjct: 12  TGRSRRGKTTLALHIVAEAMKTGGIAAFVDAEHALDIGYARKLGVKTDDLLVSQPDTGEQ 71

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEI + LVRSGA+D++V+DSVAAL  +AEIEGDMG+S  G+QARLMSQALRKLT  IS+
Sbjct: 72  ALEIAETLVRSGAIDVLVVDSVAALVCKAEIEGDMGDSHMGLQARLMSQALRKLTGIISK 131

Query: 193 SKCILVFINQMRMKI 207
           S C ++FINQ+RMKI
Sbjct: 132 SNCCVIFINQIRMKI 146


>gi|326784502|ref|YP_004325007.1| UvsX RecA-like protein [Prochlorococcus phage P-SSM7]
 gi|310004535|gb|ADO98927.1| UvsX RecA-like protein [Prochlorococcus phage P-SSM7]
          Length = 336

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/332 (20%), Positives = 131/332 (39%), Gaps = 27/332 (8%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPE 76
           L+ + +  G      +    S  +  + + +GS   +  +     GG P  +I  I G  
Sbjct: 4   LTDVAKEIGNEYAGLVSDGVSAGDSADFIDTGSHIFNALVSGSIYGGVPSNKITAIAGES 63

Query: 77  SSGKTTLALHTIAQS--QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT----G 130
           S+GKT   L  +             + ++E A+        G+    +LI    T     
Sbjct: 64  STGKTFFCLGIVQHFLDSNPDAGVIYFESESAISKQMIEDRGIASDRMLIVPVATIEQFR 123

Query: 131 EQALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEGDMGESLP--GMQARLMSQALR 184
            QA  I D  V          + V+DS+  L+   EI     +       +++L+  A R
Sbjct: 124 TQACRILDNYVEQPEDKRQPLMFVLDSLGMLSTEKEIADVAADKQVRDMTKSQLIKGAFR 183

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
            LT  + ++   ++  N     IG  +   +   GG+ LK+ SS  + + +    KD   
Sbjct: 184 VLTLKLGKANVPMLVTNHTYDVIGS-YVPTKEMGGGSGLKYASSTIIYLSKK-KEKDGTE 241

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + GN  + K  K+++     Q+E  + Y +G+  +  L++LG      +K G W +  G+
Sbjct: 242 VVGNIIKCKTQKSRLTKENSQIETRLYYDKGLDRYYGLLELG------EKGGLWKNVAGR 295

Query: 305 RLGQGREN-SKIFLRENIE--IAENIESLLRQ 333
               G++  +K  L++  E      +   L +
Sbjct: 296 YEMNGKKVYAKQILKD-PETYFTAEVMQALDE 326


>gi|54792198|emb|CAE54415.1| recombination-repair protein [Vibrio cyclitrophicus]
          Length = 124

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 88/123 (71%), Positives = 110/123 (89%)

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI D L RSGA+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S
Sbjct: 2   LEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQS 61

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
            C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+K
Sbjct: 62  NCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIK 121

Query: 254 VVK 256
           VVK
Sbjct: 122 VVK 124


>gi|180050851|gb|ACB87039.1| RecA [Bacteriovorax sp. PS22S]
          Length = 115

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 86/112 (76%), Positives = 97/112 (86%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
            V+S+G LGLD+ALG  G PKGRI+EIYGPESSGKTTL LH  AQ QK GGT AFVDAEH
Sbjct: 1   PVISTGCLGLDLALGAVGIPKGRIIEIYGPESSGKTTLTLHIAAQCQKQGGTVAFVDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           ALD+ YA KLGVD+ N LISQPD+GEQALEITDMLVRSGAVD++++DSVAAL
Sbjct: 61  ALDTTYAAKLGVDIPNTLISQPDSGEQALEITDMLVRSGAVDLLIVDSVAAL 112


>gi|262067816|ref|ZP_06027428.1| RecA protein [Fusobacterium periodonticum ATCC 33693]
 gi|291378540|gb|EFE86058.1| RecA protein [Fusobacterium periodonticum ATCC 33693]
          Length = 466

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 91/348 (26%), Positives = 158/348 (45%), Gaps = 27/348 (7%)

Query: 7   MNIVDKSKALEAALS---QIQRVYGKGAIMQLGS--QGSIFEGIEVVSSGSLGLDIALGI 61
           M   +K K L+  +    +I    GK   ++LG+     +      + +G LG+D  L  
Sbjct: 1   MLSNEKRKKLDEFIKNQNKIAEKEGKE--IKLGNLNDFKMSGRENYMLTGILGID--LNT 56

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC--AFVDAEHALDSIYARKL-GVD 118
            GF KG    IYG ES GK+TLAL      Q T       +VD+E  LD  +  ++  + 
Sbjct: 57  NGFKKGTFNVIYGAESGGKSTLALQICEGFQLTDPDKQFLYVDSEGTLDETFINRIPNLK 116

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
            +N++  +    E   +    +V+ G VD+I+IDSV ++T  +++   + +++   ++R+
Sbjct: 117 KENMIFLKDGIMESIFDTIKEIVKEGLVDVIIIDSVDSMTTNSQLGKSLEDNIVMDKSRI 176

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV--RLDIRRV 236
           +S+AL  LT  IS+    +  I Q R+ +          +GG A+ +Y S   RL     
Sbjct: 177 LSRALSDLTDFISKYGITIFIIQQERINMSGYTVRQHGRSGGKAMLYYPSTVYRLAKINS 236

Query: 237 GSIKDKDSITGNQTRVKVVK-----NKMASPFKQVEFDIMYGE----GISFFGELIDLGV 287
            +  +KD I+ N+   + VK     +K++ PFK+    I         +    EL+D   
Sbjct: 237 QNETEKDQISENKVVTQYVKIINEKSKISEPFKETFTWINLDRRKKIAVKKIQELVDYAT 296

Query: 288 KASIVDKSGAWF----SFKGQRLGQGRENSKIFLRENIEIAENIESLL 331
              ++ K G+W+    S    +  QG       L EN +    ++ LL
Sbjct: 297 IYGLITKGGSWYEIVDSNGETKKVQGANGVNKLLSENPDFYTELKMLL 344


>gi|88606969|ref|YP_505754.1| recA protein, truncation [Anaplasma phagocytophilum HZ]
 gi|88598032|gb|ABD43502.1| recA protein, truncated [Anaplasma phagocytophilum HZ]
          Length = 84

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/83 (59%), Positives = 67/83 (80%), Gaps = 2/83 (2%)

Query: 8  NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
          +  DK +A++AA+ QI+R +G+G+IM+L  Q S  E +E VS+GS+ LD ALG+GG P+G
Sbjct: 4  SPSDKQRAVDAAIGQIERAFGRGSIMRL--QNSPVEAVECVSTGSIALDAALGVGGLPRG 61

Query: 68 RIVEIYGPESSGKTTLALHTIAQ 90
          RI+EI+GPESSGKTTLALH IA+
Sbjct: 62 RIIEIFGPESSGKTTLALHVIAE 84


>gi|326783500|ref|YP_004323997.1| UvsX RecA-like protein [Synechococcus phage Syn19]
 gi|310005003|gb|ADO99393.1| UvsX RecA-like protein [Synechococcus phage Syn19]
          Length = 336

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 67/332 (20%), Positives = 126/332 (37%), Gaps = 31/332 (9%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPE 76
           L  + +  G      +    +  +  + + +GS   +  +     GG P  +I  I G  
Sbjct: 4   LQDVAKEIGNEYAGLVSDGVAAGDTSDFIDTGSYIFNALVSGSIYGGVPSNKITAIAGES 63

Query: 77  SSGKTTLALHTIAQS--QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT----G 130
           S+GKT   L  +             + ++E A+        G+    ++I    T     
Sbjct: 64  STGKTFFCLGIVQHFLDSNPDAGVIYFESESAISKQMIEDRGIASDRMMIVPVATIEQFR 123

Query: 131 EQALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEGDMGESLP--GMQARLMSQALR 184
            Q+  I D  +     D    + V+DS+  L+   EI     +       +++L+  A R
Sbjct: 124 TQSCRILDKYMEQDVADRKPLMFVLDSLGMLSTEKEIADVAADKQVRDMTKSQLIKGAFR 183

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
            LT  + ++   ++  N     IG  +   +   GG+ LK+ SS  + + +    KD   
Sbjct: 184 VLTLKLGKANVPMLVTNHTYDVIGS-YIPTKEMGGGSGLKYASSTIIYLSKK-KEKDGTE 241

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + GN  + K  K+++     QVE  + Y  G+  +  L++LG K  +  K G        
Sbjct: 242 VVGNIIKCKAQKSRLTKENSQVETRLYYDRGLDRYYGLLELGEKYGVFTKRG-------N 294

Query: 305 RLGQGRENS--KIFLRE-----NIEIAENIES 329
           R+  G      K  L +       E+ E ++ 
Sbjct: 295 RIVVGESTVYPKSILADPEKYFTPEVMEQLDE 326


>gi|105959022|gb|ABF81598.1| RecA-like protein [Anaplasma phagocytophilum]
          Length = 85

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/81 (59%), Positives = 65/81 (80%), Gaps = 2/81 (2%)

Query: 8  NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
          +  DK +A++AA+ QI+R +G+G+IM+L  Q S  E +E VS+GS+ LD ALG+GG P+G
Sbjct: 7  SPSDKQRAVDAAIGQIERAFGRGSIMRL--QNSPVEAVECVSTGSIALDAALGVGGLPRG 64

Query: 68 RIVEIYGPESSGKTTLALHTI 88
          RI+EI+GPESSGKTTLALH I
Sbjct: 65 RIIEIFGPESSGKTTLALHVI 85


>gi|180050829|gb|ACB87028.1| RecA [Bacteriovorax sp. GSL4E]
          Length = 111

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 78/109 (71%), Positives = 92/109 (84%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+G LGLD+ALG+GG P GRI+E+YGPESSGKTTL LH  A+ QK GGT AF+DAEHA
Sbjct: 3   AISTGCLGLDLALGVGGIPPGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEHA 62

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
           LD+ YA KLGV L N LISQPD+GEQALEI DMLVRS AVD++++DSVA
Sbjct: 63  LDTYYAEKLGVHLPNTLISQPDSGEQALEIADMLVRSAAVDLLIVDSVA 111


>gi|226088415|dbj|BAH36960.1| recombinase A [Lactobacillus otakiensis]
          Length = 133

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 90/133 (67%), Positives = 115/133 (86%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGEQ L+I
Sbjct: 1   SSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLQI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LV SGA+DI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +IS++K I
Sbjct: 61  TDALVTSGAIDIVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISKTKTI 120

Query: 197 LVFINQMRMKIGV 209
            +FINQ+R K+GV
Sbjct: 121 AIFINQIREKVGV 133


>gi|226069496|dbj|BAH36955.1| recombinase A [Lactobacillus diolivorans]
          Length = 129

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 89/129 (68%), Positives = 112/129 (86%)

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGEQ L+
Sbjct: 1   ESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLQ 60

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           ITD LV SGAVDI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +IS++K 
Sbjct: 61  ITDALVTSGAVDIVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISKTKT 120

Query: 196 ILVFINQMR 204
           I +FINQ+R
Sbjct: 121 IAIFINQIR 129


>gi|180050841|gb|ACB87034.1| RecA [Bacteriovorax sp. IH11]
          Length = 112

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 84/112 (75%), Positives = 98/112 (87%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
            V+S+G LGLD+ALG+ G PKGRI+EIYGPESSGKTTL LH  AQ QK GGT AF+DAEH
Sbjct: 1   PVISTGCLGLDLALGVVGIPKGRIIEIYGPESSGKTTLTLHIAAQCQKQGGTVAFLDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           ALD+ YA KLGVD+ N LISQPD+GE+ALEITDMLVRSGAVD++++DSVAAL
Sbjct: 61  ALDTTYAAKLGVDIPNTLISQPDSGERALEITDMLVRSGAVDLLIVDSVAAL 112


>gi|289496104|gb|ADC98092.1| recombination protein RecA [Vibrio sp. 7G08]
          Length = 131

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 93/131 (70%), Positives = 113/131 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IAQ+QK G TCAF+DAEHALD IYA+KLGVD+  LL SQPDTGEQALEI D L R
Sbjct: 1   LTLEVIAQAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLCSQPDTGEQALEIVDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 61  SGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|42540767|gb|AAS19284.1| RecA [uncultured delta proteobacterium]
          Length = 138

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 91/135 (67%), Positives = 110/135 (81%)

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
            G    GKTTLALH +A++QK G   AFVDAEHALD  YARKLGV   +LL+SQPDTGEQ
Sbjct: 4   TGRSRRGKTTLALHIVAEAQKLGSIAAFVDAEHALDIGYARKLGVKTDDLLVSQPDTGEQ 63

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEI + LVRSGA+D++V+DSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT   ++
Sbjct: 64  ALEIAETLVRSGAIDVLVVDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLTGITTK 123

Query: 193 SKCILVFINQMRMKI 207
           S C ++FINQ+RMKI
Sbjct: 124 SNCCVIFINQIRMKI 138


>gi|29243786|gb|AAO30098.1| RecA-like protein [Anaplasma phagocytophilum]
 gi|37499737|gb|AAQ91886.1| truncated RecA [Anaplasma phagocytophilum]
 gi|258627905|gb|ACV85578.1| truncated RecA-like protein [Anaplasma phagocytophilum]
 gi|258627924|gb|ACV85591.1| truncated RecA-like protein [Anaplasma phagocytophilum]
          Length = 87

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 49/83 (59%), Positives = 67/83 (80%), Gaps = 2/83 (2%)

Query: 8  NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
          +  DK +A++AA+ QI+R +G+G+IM+L  Q S  E +E VS+GS+ LD ALG+GG P+G
Sbjct: 7  SPSDKQRAVDAAIGQIERAFGRGSIMRL--QNSPVEAVECVSTGSIALDAALGVGGLPRG 64

Query: 68 RIVEIYGPESSGKTTLALHTIAQ 90
          RI+EI+GPESSGKTTLALH IA+
Sbjct: 65 RIIEIFGPESSGKTTLALHVIAE 87


>gi|113200682|ref|YP_717845.1| RecA-like recombination protein [Synechococcus phage syn9]
 gi|76574581|gb|ABA47146.1| RecA-like recombination protein [Synechococcus phage syn9]
          Length = 336

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 112/297 (37%), Gaps = 23/297 (7%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIE-VVSSGSLGLDIALG---IGGFPKGRIVE 71
           L+  + +I   Y       L S G         + +GS   +  +     GG P  +I  
Sbjct: 4   LQDVVKEINNEYAS-----LVSDGVAAGDTSGFIDTGSYIFNALVSGSIYGGVPGNKITA 58

Query: 72  IYGPESSGKTTLALHTIAQS--QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           I G  S+GKT   L  +             + ++E A+        G+    ++I    T
Sbjct: 59  IAGESSTGKTFFCLGIVQHFLESNPDAGVIYFESESAISKQMIEDRGIPSDRMMIVPVST 118

Query: 130 ----GEQALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEGDMGESLP--GMQARLM 179
                 Q+  I D  +     D    + V+DS+  L    E+E    +       +++L+
Sbjct: 119 IEEFRTQSCRILDKYMEQPKEDRQPMMFVLDSLGMLASNKEVEDVANDKQVRDMTKSQLI 178

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
             A R LT  + ++   ++  N     IG    + E   GG +   Y+S  +        
Sbjct: 179 KGAFRVLTLKLGKANVPMLVTNHTYDVIGAYMPTKEM--GGGSGLKYASSTIIYLSKKKE 236

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
           KD   + GN  + K  K+++     QVE  + Y  G+  +  L++LG K  +  K G
Sbjct: 237 KDGTEVVGNIIKCKAQKSRLTKENSQVETRLYYDRGLDRYYGLLELGEKYGVFTKRG 293


>gi|180050883|gb|ACB87055.1| RecA [Bacteriovorax sp. MIA2]
          Length = 148

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 98/146 (67%), Positives = 118/146 (80%), Gaps = 1/146 (0%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           AIM+L +  +  E I  +S+G LGLD+ LGIGG PKGRI+EIYGPESSGKTTL LH  A+
Sbjct: 1   AIMKLDADSNTPEKIPAISTGCLGLDLGLGIGGVPKGRIIEIYGPESSGKTTLTLHIAAE 60

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK GGT AFVDAEHALD++YA  LGVD+ N LISQPD+GEQALEI DMLVRSGAVD+++
Sbjct: 61  CQKEGGTVAFVDAEHALDTVYASNLGVDIPNTLISQPDSGEQALEIADMLVRSGAVDLLI 120

Query: 151 IDSVAALTPRAEIE-GDMGESLPGMQ 175
           +DSVAALTPRAE+   DMG++  G+ 
Sbjct: 121 VDSVAALTPRAELRARDMGDTHMGLP 146


>gi|42540759|gb|AAS19280.1| RecA [uncultured delta proteobacterium]
          Length = 138

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 89/135 (65%), Positives = 111/135 (82%)

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
            G    GKTTLALH IA  Q+TGG   FVDAEHALD  YAR+LG+  ++LLISQPDTGEQ
Sbjct: 4   SGRSRRGKTTLALHIIAXXQRTGGIAGFVDAEHALDLAYARRLGIATEDLLISQPDTGEQ 63

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEI +MLVRSGA+D++V+DSVAAL P+AEIEG+MG++  G+QA  +SQALRKLT +IS+
Sbjct: 64  ALEIAEMLVRSGALDVLVVDSVAALVPKAEIEGEMGDAHMGLQALPLSQALRKLTGTISK 123

Query: 193 SKCILVFINQMRMKI 207
           S+  ++FINQ+RMKI
Sbjct: 124 SRTAVIFINQIRMKI 138


>gi|42540763|gb|AAS19282.1| RecA [uncultured delta proteobacterium]
          Length = 138

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 92/135 (68%), Positives = 113/135 (83%)

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
            G    GKTTLALH IA  Q+TGG   FVDAEHALD  YAR+LG+  ++LLISQPDTGEQ
Sbjct: 4   SGRSRRGKTTLALHIIAXXQRTGGIAGFVDAEHALDLAYARRLGIATEDLLISQPDTGEQ 63

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           ALEI +MLVRSGA+D++V+DSVAAL P+AEIEG+MG++  G+QARLMSQALRKLT +IS+
Sbjct: 64  ALEIAEMLVRSGALDVLVVDSVAALVPKAEIEGEMGDAHMGLQARLMSQALRKLTGTISK 123

Query: 193 SKCILVFINQMRMKI 207
           S+  ++FINQ+RMKI
Sbjct: 124 SRTAVIFINQIRMKI 138


>gi|226088421|dbj|BAH36963.1| recombinase A [Lactobacillus rapi]
 gi|226088429|dbj|BAH36967.1| recombinase A [Lactobacillus kisonensis]
 gi|226088439|dbj|BAH36972.1| recombinase A [Lactobacillus kisonensis]
 gi|226088441|dbj|BAH36973.1| recombinase A [Lactobacillus rapi]
          Length = 130

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 89/130 (68%), Positives = 112/130 (86%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGEQ L+I
Sbjct: 1   SSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLQI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LV SGAVDI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +IS++K I
Sbjct: 61  TDALVTSGAVDIVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISKTKTI 120

Query: 197 LVFINQMRMK 206
            +FINQ+R K
Sbjct: 121 AIFINQIREK 130


>gi|105959014|gb|ABF81593.1| truncated RecA [Anaplasma phagocytophilum]
          Length = 87

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 49/83 (59%), Positives = 67/83 (80%), Gaps = 2/83 (2%)

Query: 8  NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
          +  DK +A++AA+ QI+R +G+G+IM+L  Q S  E +E VS+GS+ LD ALG+GG P+G
Sbjct: 7  SPSDKQRAVDAAIGQIERAFGRGSIMRL--QNSPVEAVECVSTGSVALDAALGVGGLPRG 64

Query: 68 RIVEIYGPESSGKTTLALHTIAQ 90
          RI+EI+GPESSGKTTLALH IA+
Sbjct: 65 RIIEIFGPESSGKTTLALHVIAE 87


>gi|289496048|gb|ADC98064.1| recombination protein RecA [Vibrio sp. 7A04]
 gi|289496050|gb|ADC98065.1| recombination protein RecA [Aliivibrio logei]
 gi|289496052|gb|ADC98066.1| recombination protein RecA [Aliivibrio logei]
 gi|289496054|gb|ADC98067.1| recombination protein RecA [Vibrio sp. 7A12]
 gi|289496064|gb|ADC98072.1| recombination protein RecA [Aliivibrio logei]
 gi|289496066|gb|ADC98073.1| recombination protein RecA [Aliivibrio logei]
 gi|289496068|gb|ADC98074.1| recombination protein RecA [Aliivibrio logei]
 gi|289496070|gb|ADC98075.1| recombination protein RecA [Vibrio sp. 7C09]
 gi|289496072|gb|ADC98076.1| recombination protein RecA [Aliivibrio logei]
 gi|289496076|gb|ADC98078.1| recombination protein RecA [Aliivibrio logei]
 gi|289496078|gb|ADC98079.1| recombination protein RecA [Aliivibrio logei]
 gi|289496082|gb|ADC98081.1| recombination protein RecA [Aliivibrio logei]
 gi|289496084|gb|ADC98082.1| recombination protein RecA [Aliivibrio logei]
 gi|289496086|gb|ADC98083.1| recombination protein RecA [Vibrio sp. 7E03]
 gi|289496088|gb|ADC98084.1| recombination protein RecA [Vibrio sp. 7E04]
 gi|289496090|gb|ADC98085.1| recombination protein RecA [Aliivibrio logei]
 gi|289496092|gb|ADC98086.1| recombination protein RecA [Aliivibrio logei]
 gi|289496094|gb|ADC98087.1| recombination protein RecA [Vibrio sp. 7E11]
 gi|289496096|gb|ADC98088.1| recombination protein RecA [Aliivibrio logei]
 gi|289496098|gb|ADC98089.1| recombination protein RecA [Aliivibrio logei]
 gi|289496100|gb|ADC98090.1| recombination protein RecA [Aliivibrio logei]
 gi|289496110|gb|ADC98095.1| recombination protein RecA [Vibrio sp. 7H01]
 gi|289496112|gb|ADC98096.1| recombination protein RecA [Aliivibrio logei]
          Length = 131

 Score =  116 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 93/131 (70%), Positives = 113/131 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IAQ+QK G TCAF+DAEHALD IYA+KLGVD+  LL SQPDTGEQALEI D L R
Sbjct: 1   LTLEAIAQAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLCSQPDTGEQALEIVDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 61  SGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|226088413|dbj|BAH36959.1| recombinase A [Lactobacillus parakefiri]
          Length = 128

 Score =  116 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 87/128 (67%), Positives = 111/128 (86%)

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ESSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGEQ L+
Sbjct: 1   ESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLQ 60

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           ITD LV SGA+DI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +IS++K 
Sbjct: 61  ITDALVTSGAIDIVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISKTKT 120

Query: 196 ILVFINQM 203
           I +FINQ+
Sbjct: 121 IAIFINQI 128


>gi|6840959|gb|AAF28847.1|AF119245_1 RecA protein [Salmonella enterica subsp. enterica serovar
          Enteritidis]
          Length = 84

 Score =  116 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 49/79 (62%), Positives = 60/79 (75%), Gaps = 2/79 (2%)

Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
          +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6  NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71 EIYGPESSGKTTLALHTIA 89
          EIYGPESSGKT L +  IA
Sbjct: 64 EIYGPESSGKTALTVQVIA 82


>gi|326783275|ref|YP_004323779.1| UvsX RecA-like protein [Prochlorococcus phage Syn33]
 gi|310005222|gb|ADO99611.1| UvsX RecA-like protein [Prochlorococcus phage Syn33]
          Length = 336

 Score =  116 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 67/337 (19%), Positives = 132/337 (39%), Gaps = 29/337 (8%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEI 72
           L+  + +I   Y  G +       +  +    + +GS   +  +     GG P  +I  I
Sbjct: 4   LKEVVKEIDNEYA-GLV---SDGVAAGDTSGFIDTGSYIFNALVSGSVYGGVPGNKITAI 59

Query: 73  YGPESSGKTTLALHTIAQS--QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT- 129
            G  S+GKT   L  +             + ++E A+        G+    ++I    T 
Sbjct: 60  AGESSTGKTFFCLGIVQHFLDSNPDAGVIYFESESAISKQMIEDRGIASDRMMIVPVSTI 119

Query: 130 ---GEQALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEGDMGESLP--GMQARLMS 180
                Q+  I D  +     +    + V+DS+  L    E+E    +       +++L+ 
Sbjct: 120 EEFRTQSCRILDKYMEQKEDERKPLMFVLDSLGMLASNKEVEDVANDKQVRDMTKSQLIK 179

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
            A R LT  + ++   ++  N     IG  +   +   GG+ LK+ SS  + + +    K
Sbjct: 180 GAFRVLTLKLGKANVPMLVTNHTYDVIGS-YVPMKEMGGGSGLKYASSTIIYLSKK-KEK 237

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           D   + GN  + K  K+++     Q+E  + Y  G+  +  L++LG      +K G W +
Sbjct: 238 DGTDVVGNIIKCKAQKSRLTKENSQIETRLYYDRGLDKYYGLLELG------EKYGMWKN 291

Query: 301 FKGQRLGQGRENSKIFLRENIE--IAENIESLLRQNA 335
             G+    G++     + ++ E    E +   L + A
Sbjct: 292 VAGRYEMNGKKVYAKAILKDPETYFTEEVMQALDEAA 328


>gi|226088423|dbj|BAH36964.1| recombinase A [Lactobacillus sunkii]
 gi|226088425|dbj|BAH36965.1| recombinase A [Lactobacillus otakiensis]
 gi|226088427|dbj|BAH36966.1| recombinase A [Lactobacillus otakiensis]
 gi|226088431|dbj|BAH36968.1| recombinase A [Lactobacillus sunkii]
 gi|226088435|dbj|BAH36970.1| recombinase A [Lactobacillus sunkii]
 gi|226088437|dbj|BAH36971.1| recombinase A [Lactobacillus sunkii]
          Length = 130

 Score =  116 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 88/130 (67%), Positives = 112/130 (86%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGEQ L+I
Sbjct: 1   SSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLQI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LV SGA+DI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +IS++K I
Sbjct: 61  TDALVTSGAIDIVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISKTKTI 120

Query: 197 LVFINQMRMK 206
            +FINQ+R K
Sbjct: 121 AIFINQIREK 130


>gi|193494080|gb|ACF18030.1| recombinase A [Enterobacter sp. Ng5b]
          Length = 133

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 92/133 (69%), Positives = 113/133 (84%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTGEQALEI D L R
Sbjct: 1   LTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AEIEG++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ
Sbjct: 61  SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 120

Query: 203 MRMKIGVMFGSPE 215
           +RMKIGVMFG+PE
Sbjct: 121 IRMKIGVMFGNPE 133


>gi|289496244|gb|ADC98162.1| recombination protein RecA [Vibrio sp. 12F11]
          Length = 131

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 90/131 (68%), Positives = 113/131 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L R
Sbjct: 1   LTLELIAAAQREGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 61  SGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|9965219|gb|AAG09995.1| RecA [Acinetobacter radioresistens]
          Length = 127

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 95/127 (74%), Positives = 111/127 (87%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ L  IAQ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLV
Sbjct: 1   TMTLQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D+IV+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN
Sbjct: 61  RSGAIDLIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120

Query: 202 QMRMKIG 208
           Q+RMKIG
Sbjct: 121 QIRMKIG 127


>gi|166714595|gb|ABY88029.1| RecA [Stenotrophomonas sp. LMG 10879]
          Length = 114

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 78/114 (68%), Positives = 95/114 (83%), Gaps = 2/114 (1%)

Query: 187 TSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           T +I RS  ++VFINQ+RMKIGVM    SPE TTGGNALKFY+SVRLDIRR+G+IK  D 
Sbjct: 1   TGNIKRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDE 60

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           I GNQT++KVVKNK+A PFKQV  +I+YGEGIS  GELID+GV+A +V+K+GAW
Sbjct: 61  IIGNQTKIKVVKNKLAPPFKQVITEILYGEGISREGELIDMGVEAKLVEKAGAW 114


>gi|326782438|ref|YP_004322838.1| UvsX RecA-like protein [Synechococcus phage S-ShM2]
 gi|310003386|gb|ADO97783.1| UvsX RecA-like protein [Synechococcus phage S-ShM2]
          Length = 356

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 63/305 (20%), Positives = 121/305 (39%), Gaps = 23/305 (7%)

Query: 48  VSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIAQS--QKTGGTCAFVD 102
           + +GS   +  +     GG P  +I  I G  S+GKT   L  +             + +
Sbjct: 52  IDTGSYIFNALVSGSIYGGVPSNKITAIAGESSTGKTFFCLGIVQHFLDSNPDAGVIYFE 111

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDT----GEQALEITDMLVRSGAVD----IIVIDSV 154
           +E A+      + G+    ++I    T      Q+  I D  +     D    + V+DS+
Sbjct: 112 SESAISRSMIEERGIASDRMMIVPVATIEQFRTQSCRILDKYMEQDEADRKPLMFVLDSL 171

Query: 155 AALTPRAEIEGDMGESLP--GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
             L+   EI     +       +++L+  A R LT  + ++   ++  N     IG  + 
Sbjct: 172 GMLSTEKEIADVAADKQVRDMTKSQLIKGAFRVLTLKLGKANVPMLVTNHTYDVIGA-YV 230

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
             +   GG+ LK+ +S  + + +    KD   + GN  + K  K+++     Q+E  + Y
Sbjct: 231 PMKEMGGGSGLKYAASTIIYLSKK-KEKDGTDVIGNIIKCKAQKSRLTKENSQIETRLYY 289

Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE-NIEIAENIESLL 331
             G+  +  L++LG K  +  ++G      G  +       K  L++ +      I   L
Sbjct: 290 DRGLDKYYGLLELGEKYGVFQRNGNRIKIDGASVY-----PKQILKDPDKYFTPEIMQAL 344

Query: 332 RQNAG 336
            + AG
Sbjct: 345 DECAG 349


>gi|226088419|dbj|BAH36962.1| recombinase A [Lactobacillus kisonensis]
          Length = 127

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 87/127 (68%), Positives = 110/127 (86%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGEQ L+I
Sbjct: 1   SSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLQI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LV SGAVDI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +IS++K I
Sbjct: 61  TDALVTSGAVDIVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISKTKTI 120

Query: 197 LVFINQM 203
            +FINQ+
Sbjct: 121 AIFINQI 127


>gi|6224838|gb|AAF05974.1| RecA protein [Acinetobacter johnsonii]
 gi|9965221|gb|AAG09996.1| RecA [Acinetobacter sp. RUH 2866]
          Length = 127

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 94/127 (74%), Positives = 111/127 (87%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ L  IA+ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLV
Sbjct: 1   TMTLQAIAECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D+IV+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN
Sbjct: 61  RSGAIDLIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120

Query: 202 QMRMKIG 208
           Q+RMKIG
Sbjct: 121 QIRMKIG 127


>gi|226088417|dbj|BAH36961.1| recombinase A [Lactobacillus otakiensis]
          Length = 128

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 87/128 (67%), Positives = 111/128 (86%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGEQ L+I
Sbjct: 1   SSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLQI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           TD LV SGA+DI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +IS++K I
Sbjct: 61  TDALVTSGAIDIVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISKTKTI 120

Query: 197 LVFINQMR 204
            +FINQ+R
Sbjct: 121 AIFINQIR 128


>gi|289495970|gb|ADC98025.1| recombination protein RecA [Vibrio sp. 1B07]
 gi|289495986|gb|ADC98033.1| recombination protein RecA [Vibrio sp. 1C05]
 gi|289496308|gb|ADC98194.1| recombination protein RecA [Vibrio sp. 13D01]
 gi|289496386|gb|ADC98233.1| recombination protein RecA [Vibrio sp. 13H12]
          Length = 131

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 91/131 (69%), Positives = 113/131 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L R
Sbjct: 1   LTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 61  SGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|289495968|gb|ADC98024.1| recombination protein RecA [Vibrio sp. 1B04]
          Length = 131

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 90/131 (68%), Positives = 113/131 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L R
Sbjct: 1   LTLECIAAAQKQGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 61  SGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|27650972|emb|CAD36652.1| homologous recombination factor [Streptococcus suis]
 gi|27650974|emb|CAD36653.1| homologous recombination factor [Streptococcus suis]
 gi|27650976|emb|CAD36654.1| homologous recombination factor [Streptococcus suis]
 gi|27650978|emb|CAD36655.1| homologous recombination factor [Streptococcus suis]
 gi|27650980|emb|CAD36656.1| homologous recombination factor [Streptococcus suis]
 gi|27650982|emb|CAD36657.1| homologous recombination factor [Streptococcus suis]
 gi|27650984|emb|CAD36658.1| homologous recombination factor [Streptococcus suis]
 gi|27650986|emb|CAD36659.1| homologous recombination factor [Streptococcus suis]
 gi|27650990|emb|CAD36661.1| homologous recombination factor [Streptococcus suis]
 gi|27650992|emb|CAD36662.1| homologous recombination factor [Streptococcus suis]
 gi|27650994|emb|CAD36663.1| homologous recombination factor [Streptococcus suis]
 gi|27650996|emb|CAD36664.1| homologous recombination factor [Streptococcus suis]
 gi|27650998|emb|CAD36665.1| homologous recombination factor [Streptococcus suis]
 gi|27651000|emb|CAD36666.1| homologous recombination factor [Streptococcus suis]
 gi|27651002|emb|CAD36667.1| homologous recombination factor [Streptococcus suis]
 gi|27651004|emb|CAD36668.1| homologous recombination factor [Streptococcus suis]
 gi|27651006|emb|CAD36669.1| homologous recombination factor [Streptococcus suis]
 gi|27651008|emb|CAD36670.1| homologous recombination factor [Streptococcus suis]
 gi|27651010|emb|CAD36671.1| homologous recombination factor [Streptococcus suis]
 gi|27651012|emb|CAD36672.1| homologous recombination factor [Streptococcus suis]
 gi|27651014|emb|CAD36673.1| homologous recombination factor [Streptococcus suis]
 gi|27651016|emb|CAD36674.1| homologous recombination factor [Streptococcus suis]
 gi|27651020|emb|CAD36676.1| homologous recombination factor [Streptococcus suis]
 gi|27651022|emb|CAD36677.1| homologous recombination factor [Streptococcus suis]
 gi|27651024|emb|CAD36678.1| homologous recombination factor [Streptococcus suis]
 gi|27651026|emb|CAD36679.1| homologous recombination factor [Streptococcus suis]
 gi|27651030|emb|CAD36681.1| homologous recombination factor [Streptococcus suis]
 gi|27651032|emb|CAD36682.1| homologous recombination factor [Streptococcus suis]
 gi|27651034|emb|CAD36683.1| homologous recombination factor [Streptococcus suis]
 gi|27651036|emb|CAD36684.1| homologous recombination factor [Streptococcus suis]
 gi|27651050|emb|CAD36691.1| homologous recombination factor [Streptococcus suis]
 gi|76577737|gb|ABA54139.1| homologous recombination factor [Streptococcus suis]
 gi|145750862|gb|ABP96746.1| homologous recombination factor [Streptococcus suis]
 gi|145751055|gb|ABP96755.1| homologous recombination factor [Streptococcus suis]
 gi|145751100|gb|ABP96757.1| homologous recombination factor [Streptococcus suis]
 gi|145751389|gb|ABP96771.1| homologous recombination factor [Streptococcus suis]
 gi|164454904|dbj|BAF96997.1| homologous recombination factor [Streptococcus suis]
 gi|164454906|dbj|BAF96998.1| homologous recombination factor [Streptococcus suis]
 gi|164454908|dbj|BAF96999.1| homologous recombination factor [Streptococcus suis]
 gi|164454912|dbj|BAF97001.1| homologous recombination factor [Streptococcus suis]
 gi|208969014|dbj|BAG74308.1| homologous recombination factor [Streptococcus suis]
          Length = 118

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 64/118 (54%), Positives = 88/118 (74%), Gaps = 4/118 (3%)

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K + +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+D+R    IK     KD   
Sbjct: 1   NKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVRGNTQIKGTGDKKDQNV 60

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           G +T+VK+VKNK+A PFK+   +IMYGEGIS  GELI++G    I+ K+GAW+S+ G+
Sbjct: 61  GKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGE 118


>gi|321399592|emb|CBJ49370.1| recombinase A [Marichromatium sp. JA499]
          Length = 133

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 101/130 (77%), Positives = 118/130 (90%)

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AFVDAEHALD +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++
Sbjct: 3   QKLGGTAAFVDAEHALDPVYAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIV 62

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMF
Sbjct: 63  DSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMF 122

Query: 212 GSPETTTGGN 221
           GSPE T GGN
Sbjct: 123 GSPEATPGGN 132


>gi|159148718|dbj|BAF92424.1| recombination protein RecA [Microcystis aeruginosa NIES-44]
 gi|159148720|dbj|BAF92425.1| recombination protein RecA [Microcystis aeruginosa NIES-87]
 gi|159148722|dbj|BAF92426.1| recombination protein RecA [Microcystis aeruginosa NIES-88]
 gi|159148726|dbj|BAF92428.1| recombination protein RecA [Microcystis aeruginosa NIES-90]
 gi|159148728|dbj|BAF92429.1| recombination protein RecA [Microcystis aeruginosa NIES-98]
 gi|159148730|dbj|BAF92430.1| recombination protein RecA [Microcystis aeruginosa NIES-99]
 gi|159148732|dbj|BAF92431.1| recombination protein RecA [Microcystis aeruginosa NIES-100]
 gi|159148734|dbj|BAF92432.1| recombination protein RecA [Microcystis aeruginosa NIES-101]
 gi|159148736|dbj|BAF92433.1| recombination protein RecA [Microcystis viridis NIES-102]
 gi|159148740|dbj|BAF92435.1| recombination protein RecA [Microcystis wesenbergii NIES-105]
 gi|159148742|dbj|BAF92436.1| recombination protein RecA [Microcystis wesenbergii NIES-107]
 gi|159148744|dbj|BAF92437.1| recombination protein RecA [Microcystis wesenbergii NIES-108]
 gi|159148746|dbj|BAF92438.1| recombination protein RecA [Microcystis wesenbergii NIES-109]
 gi|159148748|dbj|BAF92439.1| recombination protein RecA [Microcystis wesenbergii NIES-112]
 gi|159148750|dbj|BAF92440.1| recombination protein RecA [Microcystis wesenbergii NIES-604]
 gi|159148752|dbj|BAF92441.1| recombination protein RecA [Microcystis aeruginosa NIES-843]
 gi|159148754|dbj|BAF92442.1| recombination protein RecA [Microcystis viridis CL4]
 gi|159148756|dbj|BAF92443.1| recombination protein RecA [Microcystis aeruginosa MCS3]
 gi|159148758|dbj|BAF92444.1| recombination protein RecA [Microcystis aeruginosa PCC 7941]
 gi|159148760|dbj|BAF92445.1| recombination protein RecA [Microcystis novacekii TL2]
 gi|159148762|dbj|BAF92446.1| recombination protein RecA [Microcystis novacekii T20-3]
 gi|159148764|dbj|BAF92447.1| recombination protein RecA [Microcystis aeruginosa TAC15]
 gi|159148766|dbj|BAF92448.1| recombination protein RecA [Microcystis aeruginosa TAC19]
 gi|159148768|dbj|BAF92449.1| recombination protein RecA [Microcystis wesenbergii TAC38]
 gi|159148770|dbj|BAF92450.1| recombination protein RecA [Microcystis novacekii TAC65]
 gi|159148772|dbj|BAF92451.1| recombination protein RecA [Microcystis aeruginosa TAC86]
 gi|159148774|dbj|BAF92452.1| recombination protein RecA [Microcystis aeruginosa TAC97]
 gi|159148776|dbj|BAF92453.1| recombination protein RecA [Microcystis aeruginosa TAC114]
 gi|159148778|dbj|BAF92454.1| recombination protein RecA [Microcystis ichthyoblabe TAC125]
 gi|159148780|dbj|BAF92455.1| recombination protein RecA [Microcystis aeruginosa TAC350]
 gi|159148782|dbj|BAF92456.1| recombination protein RecA [Microcystis aeruginosa TAC364]
 gi|159148784|dbj|BAF92457.1| recombination protein RecA [Microcystis aeruginosa TAC4]
 gi|159148786|dbj|BAF92458.1| recombination protein RecA [Microcystis aeruginosa TAC67]
 gi|159148788|dbj|BAF92459.1| recombination protein RecA [Microcystis aeruginosa TAC69]
 gi|159148790|dbj|BAF92460.1| recombination protein RecA [Microcystis aeruginosa TAC76]
 gi|159148792|dbj|BAF92461.1| recombination protein RecA [Microcystis aeruginosa TAC110]
 gi|159148794|dbj|BAF92462.1| recombination protein RecA [Microcystis aeruginosa TAC96]
 gi|159148796|dbj|BAF92463.1| recombination protein RecA [Microcystis aeruginosa TAC115]
 gi|159148800|dbj|BAF92465.1| recombination protein RecA [Microcystis aeruginosa TAC128]
 gi|159148802|dbj|BAF92466.1| recombination protein RecA [Microcystis aeruginosa TAC129]
 gi|159148804|dbj|BAF92467.1| recombination protein RecA [Microcystis ichthyoblabe TAC136]
 gi|159148806|dbj|BAF92468.1| recombination protein RecA [Microcystis ichthyoblabe TAC146]
 gi|159148812|dbj|BAF92471.1| recombination protein RecA [Microcystis aeruginosa TAC159]
 gi|159148814|dbj|BAF92472.1| recombination protein RecA [Microcystis aeruginosa TAC178]
 gi|159148816|dbj|BAF92473.1| recombination protein RecA [Microcystis aeruginosa TAC198]
 gi|159148818|dbj|BAF92474.1| recombination protein RecA [Microcystis aeruginosa TAC134]
 gi|159148820|dbj|BAF92475.1| recombination protein RecA [Microcystis aeruginosa TAC135]
 gi|159148822|dbj|BAF92476.1| recombination protein RecA [Microcystis aeruginosa TAC396]
 gi|159148824|dbj|BAF92477.1| recombination protein RecA [Microcystis aeruginosa NIES-904]
 gi|159148826|dbj|BAF92478.1| recombination protein RecA [Microcystis aeruginosa TAC165]
 gi|159148828|dbj|BAF92479.1| recombination protein RecA [Microcystis aeruginosa TAC169]
 gi|159148830|dbj|BAF92480.1| recombination protein RecA [Microcystis aeruginosa TAC170]
 gi|159148832|dbj|BAF92481.1| recombination protein RecA [Microcystis aeruginosa TAC171]
 gi|159148834|dbj|BAF92482.1| recombination protein RecA [Microcystis aeruginosa NIES-901]
 gi|159148836|dbj|BAF92483.1| recombination protein RecA [Microcystis aeruginosa NIES-298]
 gi|159148838|dbj|BAF92484.1| recombination protein RecA [Microcystis aeruginosa NIES-299]
 gi|159148840|dbj|BAF92485.1| recombination protein RecA [Microcystis aeruginosa NIES-478]
 gi|159148842|dbj|BAF92486.1| recombination protein RecA [Microcystis aeruginosa TAC74]
 gi|159148844|dbj|BAF92487.1| recombination protein RecA [Microcystis novacekii TAC75]
 gi|159148846|dbj|BAF92488.1| recombination protein RecA [Microcystis aeruginosa TAC95]
 gi|159148848|dbj|BAF92489.1| recombination protein RecA [Microcystis aeruginosa TAC122]
 gi|159148850|dbj|BAF92490.1| recombination protein RecA [Microcystis aeruginosa TAC124]
 gi|159148852|dbj|BAF92491.1| recombination protein RecA [Microcystis aeruginosa TAC355]
 gi|159148854|dbj|BAF92492.1| recombination protein RecA [Microcystis aeruginosa TAC356]
 gi|159148856|dbj|BAF92493.1| recombination protein RecA [Microcystis aeruginosa TAC357]
 gi|159148858|dbj|BAF92494.1| recombination protein RecA [Microcystis aeruginosa TAC358]
 gi|159148860|dbj|BAF92495.1| recombination protein RecA [Microcystis aeruginosa TAC361]
 gi|159148862|dbj|BAF92496.1| recombination protein RecA [Microcystis aeruginosa TAC151]
 gi|159148864|dbj|BAF92497.1| recombination protein RecA [Microcystis aeruginosa TAC156]
 gi|159148866|dbj|BAF92498.1| recombination protein RecA [Microcystis aeruginosa TAC154]
 gi|159148868|dbj|BAF92499.1| recombination protein RecA [Microcystis aeruginosa TAC157]
 gi|159148870|dbj|BAF92500.1| recombination protein RecA [Microcystis aeruginosa NIES-91]
 gi|159148872|dbj|BAF92501.1| recombination protein RecA [Microcystis aeruginosa TAC374]
 gi|159148874|dbj|BAF92502.1| recombination protein RecA [Microcystis aeruginosa TAC383]
 gi|240119702|dbj|BAH79393.1| recombination protein RecA [Microcystis aeruginosa KA3b]
 gi|240119716|dbj|BAH79400.1| recombination protein RecA [Microcystis aeruginosa KA4]
 gi|240119730|dbj|BAH79407.1| recombination protein RecA [Microcystis aeruginosa KA6]
 gi|240119744|dbj|BAH79414.1| recombination protein RecA [Microcystis aeruginosa KS1]
 gi|240119772|dbj|BAH79428.1| recombination protein RecA [Microcystis aeruginosa Sw5]
 gi|240119786|dbj|BAH79435.1| recombination protein RecA [Microcystis aeruginosa Ks05TA51]
 gi|240119800|dbj|BAH79442.1| recombination protein RecA [Microcystis aeruginosa Ks05TA62]
 gi|240119814|dbj|BAH79449.1| recombination protein RecA [Microcystis aeruginosa Ki05TA02]
 gi|240119828|dbj|BAH79456.1| recombination protein RecA [Microcystis aeruginosa Ki05TA07]
 gi|240119842|dbj|BAH79463.1| recombination protein RecA [Microcystis aeruginosa Ks05IS02]
 gi|240119856|dbj|BAH79470.1| recombination protein RecA [Microcystis aeruginosa Ks05IS11]
 gi|240119870|dbj|BAH79477.1| recombination protein RecA [Microcystis aeruginosa Ks05YA11]
 gi|240119884|dbj|BAH79484.1| recombination protein RecA [Microcystis aeruginosa Tn05AK01]
 gi|240119898|dbj|BAH79491.1| recombination protein RecA [Microcystis aeruginosa Tn05AK02]
 gi|240119912|dbj|BAH79498.1| recombination protein RecA [Microcystis aeruginosa Tn05AK03]
 gi|240119926|dbj|BAH79505.1| recombination protein RecA [Microcystis aeruginosa Tn05AK05]
 gi|240119940|dbj|BAH79512.1| recombination protein RecA [Microcystis aeruginosa In05Fu04]
 gi|240119954|dbj|BAH79519.1| recombination protein RecA [Microcystis aeruginosa Ia05Yo03]
 gi|240119968|dbj|BAH79526.1| recombination protein RecA [Microcystis aeruginosa Ia05Yo05]
 gi|240119982|dbj|BAH79533.1| recombination protein RecA [Microcystis aeruginosa Sn05Mb05]
 gi|240119996|dbj|BAH79540.1| recombination protein RecA [Microcystis aeruginosa LNN-s1]
 gi|240120010|dbj|BAH79547.1| recombination protein RecA [Microcystis aeruginosa Ks05IS19]
 gi|326487061|dbj|BAJ84730.1| recombination protein RecA [Microcystis aeruginosa KA5]
 gi|326487063|dbj|BAJ84731.1| recombination protein RecA [Microcystis aeruginosa Sn05Mb06]
 gi|326487067|dbj|BAJ84733.1| recombination protein RecA [Microcystis aeruginosa Thvi7]
 gi|326487071|dbj|BAJ84735.1| recombination protein RecA [Microcystis aeruginosa CTS3-5]
 gi|326487073|dbj|BAJ84736.1| recombination protein RecA [Microcystis aeruginosa CTS3-8]
 gi|326487087|dbj|BAJ84743.1| recombination protein RecA [Microcystis aeruginosa NIES-1174]
 gi|326487089|dbj|BAJ84744.1| recombination protein RecA [Microcystis aeruginosa NIES-1177]
 gi|326487091|dbj|BAJ84745.1| recombination protein RecA [Microcystis aeruginosa NIES-1181]
 gi|326487093|dbj|BAJ84746.1| recombination protein RecA [Microcystis aeruginosa Bv07BH03]
 gi|326487095|dbj|BAJ84747.1| recombination protein RecA [Microcystis aeruginosa Rs08SH05]
 gi|326487097|dbj|BAJ84748.1| recombination protein RecA [Microcystis aeruginosa Rw08NA01]
 gi|326487099|dbj|BAJ84749.1| recombination protein RecA [Microcystis aeruginosa Ki08TS01]
 gi|326487101|dbj|BAJ84750.1| recombination protein RecA [Microcystis aeruginosa Ks08TS08]
 gi|326487105|dbj|BAJ84752.1| recombination protein RecA [Microcystis aeruginosa Aw08Gb01]
          Length = 148

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 91/147 (61%), Positives = 117/147 (79%), Gaps = 1/147 (0%)

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
             Y+  LGVD+ NLL++QPDTGE ALEI D LVRS AVDI+VIDSVAAL PRAEIEG+MG
Sbjct: 1   PTYSEDLGVDINNLLVAQPDTGEAALEIVDQLVRSSAVDIVVIDSVAALVPRAEIEGEMG 60

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           ++  G+QARLMS+ALRK+  +I +S C+++F+NQ+R KIGV +G+PE TTGG ALKFY+S
Sbjct: 61  DNQVGLQARLMSKALRKIAGNIGKSGCVVIFLNQLRQKIGVTYGNPEVTTGGTALKFYAS 120

Query: 229 VRLDIRRVGSIKDKDS-ITGNQTRVKV 254
           VRLDIRR+ ++K       G + +VKV
Sbjct: 121 VRLDIRRIQTLKKGTEGEYGIRAKVKV 147


>gi|9965223|gb|AAG09997.1| RecA [Acinetobacter sp. LUH1090]
          Length = 127

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 94/127 (74%), Positives = 111/127 (87%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ L  IA+ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLV
Sbjct: 1   TMTLQAIAECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D+IV+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN
Sbjct: 61  RSGAIDLIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120

Query: 202 QMRMKIG 208
           Q+RMKIG
Sbjct: 121 QIRMKIG 127


>gi|6224842|gb|AAF05976.1| RecA protein [Acinetobacter genomosp. 9]
 gi|9965225|gb|AAG09998.1| RecA [Acinetobacter sp. ATCC 17910]
          Length = 127

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 94/127 (74%), Positives = 111/127 (87%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ L  IA+ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLV
Sbjct: 1   TMTLQAIAECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D+IV+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN
Sbjct: 61  RSGAIDMIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120

Query: 202 QMRMKIG 208
           Q+RMKIG
Sbjct: 121 QIRMKIG 127


>gi|331035530|gb|AEC53087.1| UvsX [Synechococcus phage S-CRM01]
          Length = 337

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 68/325 (20%), Positives = 131/325 (40%), Gaps = 30/325 (9%)

Query: 36  GSQGSIFEGIE----VVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTI 88
           G   SI   I+     V +GS   +  +     GG    +I  I G  S+GKT  AL  +
Sbjct: 13  GEYASIASNIQDSSTFVDTGSYIFNALVSGSIFGGVSGNKITAIAGESSTGKTFFALAVV 72

Query: 89  AQS--QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
                    G+  + D E A+         +D   + I    T E+   I          
Sbjct: 73  QNFLDTHPNGSIVYFDTESAITKSLLEDRNIDTSRVAIVNVATIEEFRNIALKACDIHTK 132

Query: 147 D--------IIVIDSVAALTPRAEIEGDMGESLP--GMQARLMSQALRKLTSSISRSKCI 196
                    + V+DS+  L+   E+   + +       +A+L   A R LT ++ ++   
Sbjct: 133 KPESERTPLLFVLDSLGMLSTTKEVTDILDDKQVRDMTKAQLTKGAFRVLTLALGKANIP 192

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++  N     IG  +   +   GG+ LK+ +S  + + +    KD   + GN  + K  K
Sbjct: 193 MIVTNHTYDVIGS-YVPTKEMGGGSGLKYAASTIIYLSKK-KEKDGTEVIGNLIKAKTAK 250

Query: 257 NKMASPFKQVEFDIMYGE-GISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           ++++   ++V   + Y E G+  +  L+DL ++A I  K+       G+++ + +E    
Sbjct: 251 SRLSKENQEVTIRLFYDERGLDKYYGLVDLAIEAGIWTKTAGRIEVNGKKIYE-KE---- 305

Query: 316 FLRENIE--IAENIESLLRQNAGLV 338
            + +N E    + +   L + A ++
Sbjct: 306 -IYKNPENYFTDEVMQELDEAAKVI 329


>gi|27650988|emb|CAD36660.1| homologous recombination factor [Streptococcus suis]
          Length = 118

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 65/118 (55%), Positives = 89/118 (75%), Gaps = 4/118 (3%)

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K + +FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+D+R    IK     KD   
Sbjct: 1   NKTKTVAIFINQLREKVGVMFGNPETTTGGRALKFYASVRMDVRGNTQIKGTGDKKDQNV 60

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           G +T+VK+VKNK+A PFK+   +IMYGEGIS  GELI++G    I+ K+GAW+S+ G+
Sbjct: 61  GKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGE 118


>gi|289496162|gb|ADC98121.1| recombination protein RecA [Vibrio sp. 12C03]
          Length = 131

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 90/131 (68%), Positives = 113/131 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L R
Sbjct: 1   LTLELIAAAQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 61  SGAIDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|289496138|gb|ADC98109.1| recombination protein RecA [Vibrio sp. 12B02]
 gi|289496154|gb|ADC98117.1| recombination protein RecA [Vibrio sp. 12B11]
 gi|289496190|gb|ADC98135.1| recombination protein RecA [Vibrio sp. 12D12]
 gi|289496212|gb|ADC98146.1| recombination protein RecA [Vibrio sp. 12G03]
 gi|289496238|gb|ADC98159.1| recombination protein RecA [Vibrio sp. 12F07]
 gi|289496350|gb|ADC98215.1| recombination protein RecA [Vibrio sp. 13F06]
 gi|289496362|gb|ADC98221.1| recombination protein RecA [Vibrio sp. 13G07]
          Length = 131

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 88/131 (67%), Positives = 113/131 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L R
Sbjct: 1   LTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 61  SGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|289495946|gb|ADC98013.1| recombination protein RecA [Vibrio sp. 1A05]
 gi|289495958|gb|ADC98019.1| recombination protein RecA [Vibrio sp. 1A11]
 gi|289495966|gb|ADC98023.1| recombination protein RecA [Vibrio sp. 1B03]
 gi|289496286|gb|ADC98183.1| recombination protein RecA [Vibrio sp. 13B10]
 gi|289496512|gb|ADC98296.1| recombination protein RecA [Vibrio sp. 14G04]
 gi|289496530|gb|ADC98305.1| recombination protein RecA [Vibrio sp. 14H04]
          Length = 130

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 91/130 (70%), Positives = 112/130 (86%)

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RS
Sbjct: 1   TLEAIACAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEICDALARS 60

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+
Sbjct: 61  GAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQI 120

Query: 204 RMKIGVMFGS 213
           RMKIGVMFG+
Sbjct: 121 RMKIGVMFGN 130


>gi|180050853|gb|ACB87040.1| RecA [Bacteriovorax sp. PS23S]
          Length = 111

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 82/111 (73%), Positives = 97/111 (87%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
            V+S+G LGLD+ALG+ G PKGRI++IYGPESSGKTTL LH  AQ QK GGT AF+DAEH
Sbjct: 1   PVISTGCLGLDLALGVVGIPKGRIIQIYGPESSGKTTLTLHIAAQCQKQGGTVAFLDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
           ALD+ YA KLGVD+ N LISQPD+GEQALEITDMLVR+GAVD++++DSVAA
Sbjct: 61  ALDTTYAAKLGVDIPNTLISQPDSGEQALEITDMLVRTGAVDLLIVDSVAA 111


>gi|289495948|gb|ADC98014.1| recombination protein RecA [Vibrio breoganii]
 gi|289495950|gb|ADC98015.1| recombination protein RecA [Vibrio breoganii]
 gi|289495996|gb|ADC98038.1| recombination protein RecA [Vibrio breoganii]
 gi|289496058|gb|ADC98069.1| recombination protein RecA [Vibrio breoganii]
 gi|289496060|gb|ADC98070.1| recombination protein RecA [Vibrio breoganii]
          Length = 131

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 88/131 (67%), Positives = 113/131 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G TCAF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI D L R
Sbjct: 1   LTLELIAAAQREGKTCAFIDAEHALDPIYAQKLGVNIDALLVSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 61  SGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|145751246|gb|ABP96764.1| homologous recombination factor [Streptococcus suis]
 gi|208969010|dbj|BAG74306.1| homologous recombination factor [Streptococcus suis]
          Length = 118

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 64/118 (54%), Positives = 88/118 (74%), Gaps = 4/118 (3%)

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K + +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+D+R    IK     KD   
Sbjct: 1   NKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVRGNTQIKGTGDKKDQNV 60

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           G +T+VK+VKNK+A PFK+   +IMYGEGIS  GELI++G    I+ K+GAW+S+ G+
Sbjct: 61  GKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLDIIQKAGAWYSYNGE 118


>gi|9965213|gb|AAG09992.1| RecA [Acinetobacter sp. 10095(LUH 1469)]
          Length = 127

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 95/127 (74%), Positives = 112/127 (88%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ L  IAQ QKTGGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLV
Sbjct: 1   TMTLQAIAQCQKTGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN
Sbjct: 61  RSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120

Query: 202 QMRMKIG 208
           Q+RMKIG
Sbjct: 121 QIRMKIG 127


>gi|93278389|gb|ABF06625.1| RecA [Mycobacterium barrassiae]
          Length = 95

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/87 (42%), Positives = 61/87 (70%)

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323
            + EFDI+YG+GIS  G LID+GV+   + KSG+WF+++G++LGQG+EN++ FL EN+++
Sbjct: 2   SRAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGKENARKFLLENVDV 61

Query: 324 AENIESLLRQNAGLVADSLLQEPAINT 350
           A  IE  +++  G+ A    +  A + 
Sbjct: 62  ANEIEKKIKEKLGIGAVVTAEAKADDV 88


>gi|27651018|emb|CAD36675.1| homologous recombination factor [Streptococcus suis]
 gi|27651038|emb|CAD36685.1| homologous recombination factor [Streptococcus suis]
 gi|27651040|emb|CAD36686.1| homologous recombination factor [Streptococcus suis]
 gi|27651042|emb|CAD36687.1| homologous recombination factor [Streptococcus suis]
 gi|27651044|emb|CAD36688.1| homologous recombination factor [Streptococcus suis]
 gi|27651046|emb|CAD36689.1| homologous recombination factor [Streptococcus suis]
 gi|27651048|emb|CAD36690.1| homologous recombination factor [Streptococcus suis]
          Length = 118

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 65/118 (55%), Positives = 89/118 (75%), Gaps = 4/118 (3%)

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K + +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+D+R    IK     KD   
Sbjct: 1   NKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVRGNTQIKGTGDKKDQNV 60

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           G +T+VK+VKNK+A PFK+V  +IMYGEGIS  GELI++G    I+ K+GAW+S+ G+
Sbjct: 61  GKETKVKIVKNKVAPPFKEVVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGE 118


>gi|6224832|gb|AAF05971.1| RecA protein [Acinetobacter haemolyticus]
          Length = 127

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 95/127 (74%), Positives = 112/127 (88%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ L  IAQ QKTGGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLV
Sbjct: 1   TMTLQAIAQCQKTGGTCAFIDAEHALDPEYARKLGVDIDNLLVSQPDNGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN
Sbjct: 61  RSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120

Query: 202 QMRMKIG 208
           Q+RMKIG
Sbjct: 121 QIRMKIG 127


>gi|327493652|gb|AEA86511.1| RecA [Campylobacter phage NCTC12673]
          Length = 348

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 69/313 (22%), Positives = 127/313 (40%), Gaps = 22/313 (7%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLAL--HTIAQS 91
                F   E V +    L++AL     GG   G +  I GP    K+  AL        
Sbjct: 21  ENSKYFGKTEFVETPVPMLNLALSGKINGGLTPG-LTVIAGPSKHFKSNYALVMMASYLQ 79

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ-ALEITDMLVRSGAVD--I 148
           +     C F D+E  +   Y    G+D   ++ +     E+   +I + L      D  I
Sbjct: 80  KYPDAVCIFYDSEFGITPNYMENFGIDTTRVIHTPVMNVEELKFDIANQLENIEDGDRVI 139

Query: 149 IVIDSVAALTPRAEIEGDMGESLP--GMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           I++DS+  L  +AEIE  + E       +++ +    R +T  +S  +  +V +N     
Sbjct: 140 IILDSLGNLASKAEIENAINEKSVVDMQRSKHIKSLFRIVTPYLSMKQIPMVVVNHTYDD 199

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSITGNQTRVKVVKNKMASPFKQ 265
           IG ++G    + G   +  YS+  + I      KD K ++ G Q  + V K++      +
Sbjct: 200 IGSLWGGQVVSGGTGVI--YSADTIFIIGKAQEKDSKKNLQGWQFTINVEKSRFIKEKSK 257

Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSG-AWFSFKGQRLGQGRENSKIFLRE----- 319
           +   + +  GI+ +  L DLG++   + K G + F+   ++    +  S+  L E     
Sbjct: 258 IPILVTFDNGINKWSGLADLGLELGFLQKQGDSHFNPFTEKKLYLKSASQEQLDEFFSEL 317

Query: 320 --NIEIAENIESL 330
             N +  + +E  
Sbjct: 318 LSNKDFVDALEYK 330


>gi|7524579|gb|AAF05978.2| RecA protein [Acinetobacter guillouiae]
          Length = 127

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 95/127 (74%), Positives = 111/127 (87%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ L  IAQ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLV
Sbjct: 1   TMTLQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN
Sbjct: 61  RSGAVDMIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120

Query: 202 QMRMKIG 208
           Q+RMKIG
Sbjct: 121 QIRMKIG 127


>gi|6224830|gb|AAF05970.1| RecA protein [Acinetobacter genomosp. 3 str. DSM 21653]
 gi|6224844|gb|AAF05977.1| RecA protein [Acinetobacter berezinae]
          Length = 127

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 94/127 (74%), Positives = 111/127 (87%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ L  IAQ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLV
Sbjct: 1   TMTLQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN
Sbjct: 61  RSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120

Query: 202 QMRMKIG 208
           Q+RMKIG
Sbjct: 121 QIRMKIG 127


>gi|159148724|dbj|BAF92427.1| recombination protein RecA [Microcystis aeruginosa NIES-89]
 gi|159148738|dbj|BAF92434.1| recombination protein RecA [Microcystis wesenbergii NIES-104]
 gi|159148798|dbj|BAF92464.1| recombination protein RecA [Microcystis aeruginosa TAC126]
 gi|159148808|dbj|BAF92469.1| recombination protein RecA [Microcystis aeruginosa TAC153]
 gi|159148810|dbj|BAF92470.1| recombination protein RecA [Microcystis aeruginosa TAC352]
 gi|240119758|dbj|BAH79421.1| recombination protein RecA [Microcystis aeruginosa SA2]
 gi|326487065|dbj|BAJ84732.1| recombination protein RecA [Microcystis aeruginosa Ss05Mb06]
 gi|326487069|dbj|BAJ84734.1| recombination protein RecA [Microcystis aeruginosa Thvi8]
 gi|326487075|dbj|BAJ84737.1| recombination protein RecA [Microcystis aeruginosa Ks07TS93]
 gi|326487077|dbj|BAJ84738.1| recombination protein RecA [Microcystis aeruginosa Ks07TS137]
 gi|326487079|dbj|BAJ84739.1| recombination protein RecA [Microcystis aeruginosa Ks07TS139]
 gi|326487081|dbj|BAJ84740.1| recombination protein RecA [Microcystis aeruginosa Ks07TS141]
 gi|326487083|dbj|BAJ84741.1| recombination protein RecA [Microcystis aeruginosa Ks07TS159]
 gi|326487085|dbj|BAJ84742.1| recombination protein RecA [Microcystis aeruginosa Kn07TS121]
 gi|326487103|dbj|BAJ84751.1| recombination protein RecA [Microcystis aeruginosa Ks08YA11]
 gi|326487107|dbj|BAJ84753.1| recombination protein RecA [Microcystis aeruginosa An08Hj03]
 gi|326487109|dbj|BAJ84754.1| recombination protein RecA [Microcystis aeruginosa As08Fu06]
          Length = 148

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 91/147 (61%), Positives = 117/147 (79%), Gaps = 1/147 (0%)

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
             Y+  LGVD+ NLL++QPDTGE ALEI D LVRS AVDI+VIDSVAAL PRAEIEG+MG
Sbjct: 1   PTYSDVLGVDINNLLVAQPDTGEAALEIVDQLVRSSAVDIVVIDSVAALVPRAEIEGEMG 60

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           ++  G+QARLMS+ALRK+  +I +S C+++F+NQ+R KIGV +G+PE TTGG ALKFY+S
Sbjct: 61  DNQVGLQARLMSKALRKIAGNIGKSGCVVIFLNQLRQKIGVTYGNPEVTTGGTALKFYAS 120

Query: 229 VRLDIRRVGSIKDKDS-ITGNQTRVKV 254
           VRLDIRR+ ++K       G + +VKV
Sbjct: 121 VRLDIRRIQTLKKGTEGEYGIRAKVKV 147


>gi|6224848|gb|AAF05979.1| RecA protein [Acinetobacter genomosp. 14TU]
 gi|6224850|gb|AAF05980.1| RecA protein [Acinetobacter genomosp. 15BJ]
 gi|6224852|gb|AAF05981.1| RecA protein [Acinetobacter genomosp. 16BJ]
 gi|6224854|gb|AAF05982.1| RecA protein [Acinetobacter genomosp. 17BJ]
 gi|9965215|gb|AAG09993.1| RecA [Acinetobacter sp. Bouvet382(K.Irino 105/85)]
          Length = 127

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 94/127 (74%), Positives = 111/127 (87%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ L  IAQ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLV
Sbjct: 1   TMTLQAIAQCQKNGGTCAFIDAEHALDPEYARKLGVDIDNLLVSQPDHGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN
Sbjct: 61  RSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120

Query: 202 QMRMKIG 208
           Q+RMKIG
Sbjct: 121 QIRMKIG 127


>gi|6224836|gb|AAF05973.1| RecA protein [Acinetobacter genomosp. 6]
          Length = 127

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 95/127 (74%), Positives = 111/127 (87%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ L  IAQ QKTGGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLV
Sbjct: 1   TMTLQAIAQCQKTGGTCAFIDAEHALDPEYARKLGVDIDNLLVSQPDNGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN
Sbjct: 61  RSGAIDMIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120

Query: 202 QMRMKIG 208
           Q RMKIG
Sbjct: 121 QXRMKIG 127


>gi|208969012|dbj|BAG74307.1| homologous recombination factor [Streptococcus suis]
          Length = 118

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 65/118 (55%), Positives = 89/118 (75%), Gaps = 4/118 (3%)

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K + +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+D+R    IK     KD   
Sbjct: 1   NKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVRGNTQIKGTGDKKDQNV 60

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           G +T+VK+VKNK+A PFK+V  +IMYGEGIS  GELI++G    I+ K+GAW+S+ G+
Sbjct: 61  GKETKVKIVKNKVAPPFKEVVVEIMYGEGISRTGELIEVGSNLGIIQKAGAWYSYNGE 118


>gi|6224834|gb|AAF05972.1| RecA protein [Acinetobacter junii]
          Length = 127

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 94/127 (74%), Positives = 111/127 (87%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ L  IAQ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLV
Sbjct: 1   TMTLQAIAQCQKNGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN
Sbjct: 61  RSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120

Query: 202 QMRMKIG 208
           Q+RMKIG
Sbjct: 121 QIRMKIG 127


>gi|164454910|dbj|BAF97000.1| homologous recombination factor [Streptococcus suis]
          Length = 118

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 64/118 (54%), Positives = 87/118 (73%), Gaps = 4/118 (3%)

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K + +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+D+R    IK     KD   
Sbjct: 1   NKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVRGNTQIKGTGDKKDQNV 60

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           G +T+VK+VKNK+A PFK+   +IMYGEGIS  GELI+ G    I+ K+GAW+S+ G+
Sbjct: 61  GKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIETGSNLGIIQKAGAWYSYNGE 118


>gi|6224826|gb|AAF05968.1| RecA protein [Acinetobacter calcoaceticus]
 gi|9965209|gb|AAG09990.1| RecA [Acinetobacter calcoaceticus]
          Length = 127

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 94/127 (74%), Positives = 111/127 (87%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ L  IAQ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLV
Sbjct: 1   TMTLQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN
Sbjct: 61  RSGAIDMIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120

Query: 202 QMRMKIG 208
           Q+RMKIG
Sbjct: 121 QIRMKIG 127


>gi|213420680|ref|ZP_03353746.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 105

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/103 (41%), Positives = 73/103 (70%)

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
           KNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+ N+  
Sbjct: 1   KNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATT 60

Query: 316 FLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           +L+EN   A+ IE  +R+      ++       +++  A+ ++
Sbjct: 61  WLKENPATAKEIEKRVRELLLSNQNATPDFAVDDSEGVAETNE 103


>gi|6224828|gb|AAF05969.1| RecA protein [Acinetobacter baumannii]
 gi|6224856|gb|AAF05983.1| RecA protein [Acinetobacter genomosp. 13TU]
 gi|9965211|gb|AAG09991.1| RecA [Acinetobacter baumannii]
 gi|9965217|gb|AAG09994.1| RecA [Acinetobacter sp. 5804(LUH 1471)]
          Length = 127

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 94/127 (74%), Positives = 112/127 (88%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ L  IAQ QK+GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLV
Sbjct: 1   TMTLQAIAQCQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN
Sbjct: 61  RSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120

Query: 202 QMRMKIG 208
           Q+RMKIG
Sbjct: 121 QIRMKIG 127


>gi|6224840|gb|AAF05975.1| RecA protein [Acinetobacter lwoffii]
          Length = 127

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 94/127 (74%), Positives = 111/127 (87%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ L  IA+ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLV
Sbjct: 1   TMXLQAIAECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHGEQALEIADMLV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RSGA+D+IV+DSVAALTPRAEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN
Sbjct: 61  RSGAIDMIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120

Query: 202 QMRMKIG 208
           Q+RMKIG
Sbjct: 121 QIRMKIG 127


>gi|27651028|emb|CAD36680.1| homologous recombination factor [Streptococcus suis]
          Length = 118

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 64/117 (54%), Positives = 87/117 (74%), Gaps = 4/117 (3%)

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K + +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+D+R    IK     KD   
Sbjct: 1   NKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVRGNTQIKGTGDKKDQNV 60

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
           G +T+VK+VKNK+A PFK+   +IMYGEGIS  GELI++G    I+ K+GAW+S+ G
Sbjct: 61  GKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNG 117


>gi|180050869|gb|ACB87048.1| RecA [Bacteriovorax sp. T3]
          Length = 142

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 97/142 (68%), Positives = 115/142 (80%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  +S+G LGLD+ LGIGG PKGRI+EIYGPESSGKTTL LH  A+ QK GGT AFVDA
Sbjct: 1   KIPAISTGCLGLDLGLGIGGVPKGRIIEIYGPESSGKTTLTLHIAAECQKEGGTVAFVDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD++YA  LGVD+ N LISQPD+GEQALEI DMLVRS AVD++++DSVAALTPRAE+
Sbjct: 61  EHALDTVYASNLGVDIPNTLISQPDSGEQALEIADMLVRSRAVDLLLVDSVAALTPRAEL 120

Query: 164 EGDMGESLPGMQARLMSQALRK 185
           EGDMG++  G+ AR    +  K
Sbjct: 121 EGDMGDTHLGLHARSTHGSSSK 142


>gi|289496130|gb|ADC98105.1| recombination protein RecA [Vibrio splendidus]
 gi|289496140|gb|ADC98110.1| recombination protein RecA [Vibrio splendidus]
 gi|289496368|gb|ADC98224.1| recombination protein RecA [Vibrio splendidus]
 gi|289496424|gb|ADC98252.1| recombination protein RecA [Vibrio splendidus]
          Length = 131

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 90/131 (68%), Positives = 113/131 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G TCAFVDAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L R
Sbjct: 1   LTLELIAAAQRVGKTCAFVDAEHALDPVYAQKLGVDIDALLVSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGA+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 61  SGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|289495972|gb|ADC98026.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289495978|gb|ADC98029.1| recombination protein RecA [Vibrio splendidus]
 gi|289495980|gb|ADC98030.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496008|gb|ADC98044.1| recombination protein RecA [Vibrio splendidus]
 gi|289496014|gb|ADC98047.1| recombination protein RecA [Vibrio sp. 1D09]
 gi|289496020|gb|ADC98050.1| recombination protein RecA [Vibrio splendidus]
 gi|289496040|gb|ADC98060.1| recombination protein RecA [Vibrio splendidus]
 gi|289496056|gb|ADC98068.1| recombination protein RecA [Vibrio splendidus]
 gi|289496108|gb|ADC98094.1| recombination protein RecA [Vibrio splendidus]
 gi|289496118|gb|ADC98099.1| recombination protein RecA [Vibrio splendidus]
 gi|289496128|gb|ADC98104.1| recombination protein RecA [Vibrio sp. 12A09]
 gi|289496132|gb|ADC98106.1| recombination protein RecA [Vibrio sp. 12A11]
 gi|289496134|gb|ADC98107.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496136|gb|ADC98108.1| recombination protein RecA [Vibrio splendidus]
 gi|289496148|gb|ADC98114.1| recombination protein RecA [Vibrio splendidus]
 gi|289496156|gb|ADC98118.1| recombination protein RecA [Vibrio splendidus]
 gi|289496166|gb|ADC98123.1| recombination protein RecA [Vibrio splendidus]
 gi|289496168|gb|ADC98124.1| recombination protein RecA [Vibrio splendidus]
 gi|289496176|gb|ADC98128.1| recombination protein RecA [Vibrio splendidus]
 gi|289496178|gb|ADC98129.1| recombination protein RecA [Vibrio splendidus]
 gi|289496180|gb|ADC98130.1| recombination protein RecA [Vibrio splendidus]
 gi|289496184|gb|ADC98132.1| recombination protein RecA [Vibrio splendidus]
 gi|289496186|gb|ADC98133.1| recombination protein RecA [Vibrio splendidus]
 gi|289496194|gb|ADC98137.1| recombination protein RecA [Vibrio splendidus]
 gi|289496196|gb|ADC98138.1| recombination protein RecA [Vibrio splendidus]
 gi|289496198|gb|ADC98139.1| recombination protein RecA [Vibrio splendidus]
 gi|289496200|gb|ADC98140.1| recombination protein RecA [Vibrio splendidus]
 gi|289496202|gb|ADC98141.1| recombination protein RecA [Vibrio splendidus]
 gi|289496226|gb|ADC98153.1| recombination protein RecA [Vibrio splendidus]
 gi|289496232|gb|ADC98156.1| recombination protein RecA [Vibrio splendidus]
 gi|289496254|gb|ADC98167.1| recombination protein RecA [Vibrio splendidus]
 gi|289496266|gb|ADC98173.1| recombination protein RecA [Vibrio splendidus]
 gi|289496268|gb|ADC98174.1| recombination protein RecA [Vibrio splendidus]
 gi|289496278|gb|ADC98179.1| recombination protein RecA [Vibrio splendidus]
 gi|289496280|gb|ADC98180.1| recombination protein RecA [Vibrio splendidus]
 gi|289496290|gb|ADC98185.1| recombination protein RecA [Vibrio sp. 13B12]
 gi|289496294|gb|ADC98187.1| recombination protein RecA [Vibrio splendidus]
 gi|289496300|gb|ADC98190.1| recombination protein RecA [Vibrio splendidus]
 gi|289496306|gb|ADC98193.1| recombination protein RecA [Vibrio splendidus]
 gi|289496328|gb|ADC98204.1| recombination protein RecA [Vibrio splendidus]
 gi|289496346|gb|ADC98213.1| recombination protein RecA [Vibrio splendidus]
 gi|289496376|gb|ADC98228.1| recombination protein RecA [Vibrio splendidus]
 gi|289496388|gb|ADC98234.1| recombination protein RecA [Vibrio splendidus]
 gi|289496390|gb|ADC98235.1| recombination protein RecA [Vibrio splendidus]
 gi|289496396|gb|ADC98238.1| recombination protein RecA [Vibrio splendidus]
 gi|289496400|gb|ADC98240.1| recombination protein RecA [Vibrio splendidus]
 gi|289496404|gb|ADC98242.1| recombination protein RecA [Vibrio splendidus]
 gi|289496406|gb|ADC98243.1| recombination protein RecA [Vibrio splendidus]
 gi|289496414|gb|ADC98247.1| recombination protein RecA [Vibrio splendidus]
 gi|289496418|gb|ADC98249.1| recombination protein RecA [Vibrio splendidus]
 gi|289496420|gb|ADC98250.1| recombination protein RecA [Vibrio splendidus]
 gi|289496422|gb|ADC98251.1| recombination protein RecA [Vibrio splendidus]
 gi|289496430|gb|ADC98255.1| recombination protein RecA [Vibrio splendidus]
 gi|289496434|gb|ADC98257.1| recombination protein RecA [Vibrio splendidus]
 gi|289496438|gb|ADC98259.1| recombination protein RecA [Vibrio splendidus]
 gi|289496444|gb|ADC98262.1| recombination protein RecA [Vibrio splendidus]
 gi|289496450|gb|ADC98265.1| recombination protein RecA [Vibrio splendidus]
 gi|289496452|gb|ADC98266.1| recombination protein RecA [Vibrio splendidus]
 gi|289496454|gb|ADC98267.1| recombination protein RecA [Vibrio splendidus]
 gi|289496460|gb|ADC98270.1| recombination protein RecA [Vibrio splendidus]
 gi|289496462|gb|ADC98271.1| recombination protein RecA [Vibrio splendidus]
 gi|289496468|gb|ADC98274.1| recombination protein RecA [Vibrio splendidus]
 gi|289496470|gb|ADC98275.1| recombination protein RecA [Vibrio splendidus]
 gi|289496476|gb|ADC98278.1| recombination protein RecA [Vibrio splendidus]
 gi|289496490|gb|ADC98285.1| recombination protein RecA [Vibrio splendidus]
 gi|289496496|gb|ADC98288.1| recombination protein RecA [Vibrio splendidus]
 gi|289496502|gb|ADC98291.1| recombination protein RecA [Vibrio splendidus]
 gi|289496506|gb|ADC98293.1| recombination protein RecA [Vibrio splendidus]
 gi|289496510|gb|ADC98295.1| recombination protein RecA [Vibrio splendidus]
 gi|289496520|gb|ADC98300.1| recombination protein RecA [Vibrio splendidus]
 gi|289496534|gb|ADC98307.1| recombination protein RecA [Vibrio splendidus]
 gi|289496536|gb|ADC98308.1| recombination protein RecA [Vibrio splendidus]
 gi|289496540|gb|ADC98310.1| recombination protein RecA [Vibrio splendidus]
 gi|289496542|gb|ADC98311.1| recombination protein RecA [Vibrio splendidus]
 gi|289496548|gb|ADC98314.1| recombination protein RecA [Vibrio splendidus]
          Length = 131

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 91/131 (69%), Positives = 113/131 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L R
Sbjct: 1   LTLELIAAAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGA+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 61  SGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|289496260|gb|ADC98170.1| recombination protein RecA [Vibrio splendidus]
 gi|289496372|gb|ADC98226.1| recombination protein RecA [Vibrio splendidus]
 gi|289496440|gb|ADC98260.1| recombination protein RecA [Vibrio splendidus]
 gi|289496526|gb|ADC98303.1| recombination protein RecA [Vibrio splendidus]
          Length = 130

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 89/130 (68%), Positives = 112/130 (86%)

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RS
Sbjct: 1   TLEVIAAAQKQGKTCAFIDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARS 60

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+
Sbjct: 61  GAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQI 120

Query: 204 RMKIGVMFGS 213
           RMKIGVMFG+
Sbjct: 121 RMKIGVMFGN 130


>gi|289496334|gb|ADC98207.1| recombination protein RecA [Vibrio sp. 13E06]
          Length = 131

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 91/131 (69%), Positives = 113/131 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L R
Sbjct: 1   LTLEVIAAAQKAGKTCAFIDAEHALDPIYAKKLGVDIDQLLVSQPDTGEQALEIADALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVDI+V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RK+T ++ +S C+ +FINQ
Sbjct: 61  SGAVDILVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKITGNLKQSNCMCIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|1480909|gb|AAB81399.1| RecA [Bacteroides thetaiotaomicron]
          Length = 129

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 89/129 (68%), Positives = 108/129 (83%)

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD GEQALEI +
Sbjct: 1   GKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDNGEQALEIAE 60

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            L+RS A+DIIVIDSVAALTP+AEIEGDMG++  G+QARLMSQALRKLT ++S+++   +
Sbjct: 61  QLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTGTVSKTRTTCI 120

Query: 199 FINQMRMKI 207
           FINQ+R KI
Sbjct: 121 FINQLREKI 129


>gi|289496074|gb|ADC98077.1| recombination protein RecA [Vibrio sp. 7C12]
 gi|289496486|gb|ADC98283.1| recombination protein RecA [Vibrio sp. 14E11]
          Length = 130

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 92/130 (70%), Positives = 112/130 (86%)

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RS
Sbjct: 1   TLEAIACAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEIVDALARS 60

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ VFINQ+
Sbjct: 61  GAVDMIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCVFINQI 120

Query: 204 RMKIGVMFGS 213
           RMKIGVMFG+
Sbjct: 121 RMKIGVMFGN 130


>gi|180050865|gb|ACB87046.1| RecA [Bacteriovorax sp. MIA3]
          Length = 114

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 77/112 (68%), Positives = 91/112 (81%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  +S+G LGLD+ L IGG PKGRI+EIYGPESSGKTTL LH  A+ QK GGT AFVDAE
Sbjct: 1   IPAISTGCLGLDLGLAIGGVPKGRIIEIYGPESSGKTTLTLHIAAECQKEGGTVAFVDAE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
           HALD++YA  LGVD+ N LISQPD+GEQALEI DMLVRSGAVD++++  +  
Sbjct: 61  HALDTVYASNLGVDIPNTLISQPDSGEQALEIADMLVRSGAVDLLIVTLLQH 112


>gi|289496116|gb|ADC98098.1| recombination protein RecA [Vibrio splendidus]
 gi|289496160|gb|ADC98120.1| recombination protein RecA [Vibrio splendidus]
 gi|289496274|gb|ADC98177.1| recombination protein RecA [Vibrio splendidus]
 gi|289496320|gb|ADC98200.1| recombination protein RecA [Vibrio splendidus]
 gi|289496482|gb|ADC98281.1| recombination protein RecA [Vibrio splendidus]
 gi|289496492|gb|ADC98286.1| recombination protein RecA [Vibrio splendidus]
 gi|289496494|gb|ADC98287.1| recombination protein RecA [Vibrio splendidus]
          Length = 131

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 90/131 (68%), Positives = 111/131 (84%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  I  +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L R
Sbjct: 1   LTLEVIGAAQKQGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QARL+SQ++RK+T ++  S C+ +FINQ
Sbjct: 61  SGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARLLSQSMRKMTGNLKASNCMCIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|289496046|gb|ADC98063.1| recombination protein RecA [Vibrio sp. 7A02]
 gi|289496062|gb|ADC98071.1| recombination protein RecA [Vibrio sp. 7B10]
 gi|289496102|gb|ADC98091.1| recombination protein RecA [Vibrio sp. 7G03]
 gi|289496106|gb|ADC98093.1| recombination protein RecA [Vibrio sp. 7G10]
          Length = 131

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 92/131 (70%), Positives = 113/131 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L TIA +Q+   TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L R
Sbjct: 1   LTLETIAAAQRVNKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IVIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 61  SGAVDLIVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|226069498|dbj|BAH36956.1| recombinase A [Lactobacillus hilgardii]
          Length = 128

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 86/128 (67%), Positives = 110/128 (85%)

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTT+ALH +A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGEQ L+ITD
Sbjct: 1   GKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLQITD 60

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            LV SGA+DI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +IS++K I +
Sbjct: 61  TLVTSGAIDIVVIDSVAALVPRAEIEGEMGDTHVGLQARLMSQALRKLSGTISKTKTIAI 120

Query: 199 FINQMRMK 206
           FINQ+R K
Sbjct: 121 FINQIREK 128


>gi|289496466|gb|ADC98273.1| recombination protein RecA [Vibrio splendidus]
          Length = 130

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 89/130 (68%), Positives = 112/130 (86%)

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RS
Sbjct: 1   TLEVIAAAQKQGKTCAFIDAEHALDPIYAQKLGVDIDGLLVSQPDTGEQALEICDALARS 60

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+
Sbjct: 61  GAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQI 120

Query: 204 RMKIGVMFGS 213
           RMKIGVMFG+
Sbjct: 121 RMKIGVMFGN 130


>gi|226069494|dbj|BAH36954.1| recombinase A [Lactobacillus buchneri]
 gi|226088411|dbj|BAH36958.1| recombinase A [Lactobacillus parabuchneri]
 gi|226088596|dbj|BAH37042.1| recombinase A [Lactobacillus sunkii]
          Length = 128

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 86/128 (67%), Positives = 110/128 (85%)

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTT+ALH +A+ QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGEQ L+ITD
Sbjct: 1   GKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLQITD 60

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            LV SGA+DI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +IS++K I +
Sbjct: 61  ALVTSGAIDIVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISKTKTIAI 120

Query: 199 FINQMRMK 206
           FINQ+R K
Sbjct: 121 FINQIREK 128


>gi|289496204|gb|ADC98142.1| recombination protein RecA [Vibrio sp. 12F04]
          Length = 131

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 88/131 (67%), Positives = 111/131 (84%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  I+ +Q+ G TCAF+DAEHALD +YAR+LGV +  LL+SQPDTGEQALEI D L R
Sbjct: 1   LTLELISAAQREGKTCAFIDAEHALDPVYARRLGVKIDELLVSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IV+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+  FINQ
Sbjct: 61  SGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCFFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|73918654|gb|AAZ93955.1| homologous recombination factor [Acinetobacter baumannii]
          Length = 124

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 93/124 (75%), Positives = 109/124 (87%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IAQ QK+GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLVRSG
Sbjct: 1   LQAIAQCQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A+D+IV+DSVAALTP+AEIEG MG+S  G+QARLMSQALRK+T +  RS C+++FINQ+R
Sbjct: 61  AIDLIVVDSVAALTPKAEIEGQMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFINQIR 120

Query: 205 MKIG 208
           MKIG
Sbjct: 121 MKIG 124


>gi|289495938|gb|ADC98009.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289495942|gb|ADC98011.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289495944|gb|ADC98012.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289495952|gb|ADC98016.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289495954|gb|ADC98017.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289495956|gb|ADC98018.1| recombination protein RecA [Vibrio sp. 1A10]
 gi|289495962|gb|ADC98021.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289495974|gb|ADC98027.1| recombination protein RecA [Vibrio sp. 1B10]
 gi|289495982|gb|ADC98031.1| recombination protein RecA [Vibrio sp. 1C03]
 gi|289495984|gb|ADC98032.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289495988|gb|ADC98034.1| recombination protein RecA [Vibrio sp. 1C06]
 gi|289495990|gb|ADC98035.1| recombination protein RecA [Vibrio sp. 1C07]
 gi|289495992|gb|ADC98036.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289495994|gb|ADC98037.1| recombination protein RecA [Vibrio sp. 1C09]
 gi|289495998|gb|ADC98039.1| recombination protein RecA [Vibrio sp. 1C12]
 gi|289496000|gb|ADC98040.1| recombination protein RecA [Vibrio sp. 1D01]
 gi|289496002|gb|ADC98041.1| recombination protein RecA [Vibrio sp. 1D02]
 gi|289496004|gb|ADC98042.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496010|gb|ADC98045.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496012|gb|ADC98046.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496016|gb|ADC98048.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496018|gb|ADC98049.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496022|gb|ADC98051.1| recombination protein RecA [Vibrio sp. 1E01]
 gi|289496024|gb|ADC98052.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496026|gb|ADC98053.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496028|gb|ADC98054.1| recombination protein RecA [Vibrio sp. 1E04]
 gi|289496030|gb|ADC98055.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496032|gb|ADC98056.1| recombination protein RecA [Vibrio sp. 1E06]
 gi|289496034|gb|ADC98057.1| recombination protein RecA [Vibrio sp. 1E07]
 gi|289496036|gb|ADC98058.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496038|gb|ADC98059.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496042|gb|ADC98061.1| recombination protein RecA [Vibrio sp. 1E12]
 gi|289496114|gb|ADC98097.1| recombination protein RecA [Vibrio sp. 12A01]
 gi|289496122|gb|ADC98101.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496124|gb|ADC98102.1| recombination protein RecA [Vibrio sp. 12A06]
 gi|289496126|gb|ADC98103.1| recombination protein RecA [Vibrio sp. 12A08]
 gi|289496142|gb|ADC98111.1| recombination protein RecA [Vibrio sp. 12B04]
 gi|289496152|gb|ADC98116.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496158|gb|ADC98119.1| recombination protein RecA [Vibrio sp. 12C01]
 gi|289496164|gb|ADC98122.1| recombination protein RecA [Vibrio sp. 12C04]
 gi|289496170|gb|ADC98125.1| recombination protein RecA [Vibrio sp. 12C09]
 gi|289496172|gb|ADC98126.1| recombination protein RecA [Vibrio sp. 12C11]
 gi|289496174|gb|ADC98127.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496192|gb|ADC98136.1| recombination protein RecA [Vibrio sp. 12E05]
 gi|289496208|gb|ADC98144.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496224|gb|ADC98152.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496228|gb|ADC98154.1| recombination protein RecA [Vibrio sp. 12H09]
 gi|289496230|gb|ADC98155.1| recombination protein RecA [Vibrio sp. 12H10]
 gi|289496234|gb|ADC98157.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496236|gb|ADC98158.1| recombination protein RecA [Vibrio sp. 12E12]
 gi|289496242|gb|ADC98161.1| recombination protein RecA [Vibrio sp. 12F10]
 gi|289496250|gb|ADC98165.1| recombination protein RecA [Vibrio sp. 12G04]
 gi|289496252|gb|ADC98166.1| recombination protein RecA [Vibrio sp. 12G05]
 gi|289496256|gb|ADC98168.1| recombination protein RecA [Vibrio sp. 12G07]
 gi|289496264|gb|ADC98172.1| recombination protein RecA [Vibrio sp. 13A02]
 gi|289496270|gb|ADC98175.1| recombination protein RecA [Vibrio sp. 13A08]
 gi|289496272|gb|ADC98176.1| recombination protein RecA [Vibrio sp. 13A10]
 gi|289496282|gb|ADC98181.1| recombination protein RecA [Vibrio sp. 13B07]
 gi|289496284|gb|ADC98182.1| recombination protein RecA [Vibrio sp. 13B08]
 gi|289496288|gb|ADC98184.1| recombination protein RecA [Vibrio sp. 13B11]
 gi|289496292|gb|ADC98186.1| recombination protein RecA [Vibrio sp. 13C01]
 gi|289496296|gb|ADC98188.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496298|gb|ADC98189.1| recombination protein RecA [Vibrio sp. 13C06]
 gi|289496302|gb|ADC98191.1| recombination protein RecA [Vibrio sp. 13C10]
 gi|289496304|gb|ADC98192.1| recombination protein RecA [Vibrio sp. 13C11]
 gi|289496310|gb|ADC98195.1| recombination protein RecA [Vibrio sp. 13D02]
 gi|289496312|gb|ADC98196.1| recombination protein RecA [Vibrio sp. 13D03]
 gi|289496314|gb|ADC98197.1| recombination protein RecA [Vibrio sp. 13D04]
 gi|289496316|gb|ADC98198.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496318|gb|ADC98199.1| recombination protein RecA [Vibrio sp. 13D09]
 gi|289496322|gb|ADC98201.1| recombination protein RecA [Vibrio sp. 13D11]
 gi|289496326|gb|ADC98203.1| recombination protein RecA [Vibrio sp. 13E01]
 gi|289496330|gb|ADC98205.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496332|gb|ADC98206.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496336|gb|ADC98208.1| recombination protein RecA [Vibrio sp. 13E07]
 gi|289496340|gb|ADC98210.1| recombination protein RecA [Vibrio sp. 13E10]
 gi|289496342|gb|ADC98211.1| recombination protein RecA [Vibrio sp. 13E11]
 gi|289496344|gb|ADC98212.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496348|gb|ADC98214.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496352|gb|ADC98216.1| recombination protein RecA [Vibrio sp. 13F07]
 gi|289496354|gb|ADC98217.1| recombination protein RecA [Vibrio sp. 13F08]
 gi|289496356|gb|ADC98218.1| recombination protein RecA [Vibrio sp. 13F10]
 gi|289496358|gb|ADC98219.1| recombination protein RecA [Vibrio sp. 13F11]
 gi|289496360|gb|ADC98220.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496364|gb|ADC98222.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496366|gb|ADC98223.1| recombination protein RecA [Vibrio sp. 13G09]
 gi|289496370|gb|ADC98225.1| recombination protein RecA [Vibrio sp. 13G12]
 gi|289496374|gb|ADC98227.1| recombination protein RecA [Vibrio sp. 13H03]
 gi|289496378|gb|ADC98229.1| recombination protein RecA [Vibrio sp. 13H05]
 gi|289496380|gb|ADC98230.1| recombination protein RecA [Vibrio sp. 13H06]
 gi|289496382|gb|ADC98231.1| recombination protein RecA [Vibrio sp. 13H07]
 gi|289496384|gb|ADC98232.1| recombination protein RecA [Vibrio sp. 13H11]
 gi|289496392|gb|ADC98236.1| recombination protein RecA [Vibrio sp. 14A05]
 gi|289496394|gb|ADC98237.1| recombination protein RecA [Vibrio sp. 14A06]
 gi|289496402|gb|ADC98241.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496408|gb|ADC98244.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496412|gb|ADC98246.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496416|gb|ADC98248.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496446|gb|ADC98263.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496448|gb|ADC98264.1| recombination protein RecA [Vibrio sp. 14C11]
 gi|289496458|gb|ADC98269.1| recombination protein RecA [Vibrio sp. 14D07]
 gi|289496474|gb|ADC98277.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496478|gb|ADC98279.1| recombination protein RecA [Vibrio sp. 14E07]
 gi|289496500|gb|ADC98290.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496504|gb|ADC98292.1| recombination protein RecA [Vibrio sp. 14F09]
 gi|289496514|gb|ADC98297.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496516|gb|ADC98298.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496522|gb|ADC98301.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496524|gb|ADC98302.1| recombination protein RecA [Vibrio sp. 14G12]
 gi|289496528|gb|ADC98304.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496532|gb|ADC98306.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496538|gb|ADC98309.1| recombination protein RecA [Vibrio sp. 14H08]
          Length = 131

 Score =  113 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 92/131 (70%), Positives = 113/131 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L R
Sbjct: 1   LTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGA+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 61  SGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|167860527|gb|ACA05041.1| recombinase A [Flammeovirga yaeyamensis]
          Length = 86

 Score =  113 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 48/89 (53%), Positives = 65/89 (73%), Gaps = 3/89 (3%)

Query: 1  MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
          M   K  N  +K KALE  ++++++ +GKGA+M++       E I  +S+GSLGLD+ALG
Sbjct: 1  MAADKGQNT-EKLKALETTIAKLEKQFGKGAVMKMTDDS--VENIPAISTGSLGLDLALG 57

Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIA 89
          +GG P+GRI+EIYGPESSGKTTL LH IA
Sbjct: 58 VGGIPRGRIIEIYGPESSGKTTLTLHIIA 86


>gi|289496144|gb|ADC98112.1| recombination protein RecA [Vibrio sp. 12B05]
 gi|289496206|gb|ADC98143.1| recombination protein RecA [Vibrio sp. 12F05]
 gi|289496240|gb|ADC98160.1| recombination protein RecA [Vibrio sp. 12F08]
          Length = 130

 Score =  113 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 89/130 (68%), Positives = 113/130 (86%)

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA +QK G TCAF+DAEHALD IYA+KLGVD+ +LL+SQPDTGEQALEI D L RS
Sbjct: 1   TLECIAAAQKQGKTCAFIDAEHALDPIYAKKLGVDIDSLLVSQPDTGEQALEICDALARS 60

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+
Sbjct: 61  GAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQI 120

Query: 204 RMKIGVMFGS 213
           RMKIGVMFG+
Sbjct: 121 RMKIGVMFGN 130


>gi|326784273|ref|YP_004324773.1| UvsX RecA-like protein [Synechococcus phage S-SSM5]
 gi|310003504|gb|ADO97900.1| UvsX RecA-like protein [Synechococcus phage S-SSM5]
          Length = 336

 Score =  113 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 109/264 (41%), Gaps = 17/264 (6%)

Query: 48  VSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC--AFVD 102
           + +GS   +  +     GG P  +I  I G  S+GKT   L  +     +       + +
Sbjct: 32  IDTGSYVFNALVSGSIYGGVPGNKITAIAGESSTGKTFFCLGIVQHFLDSDPDAGVIYFE 91

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDT----GEQALEITDMLVRSGAVD----IIVIDSV 154
           +E A+        G+D + ++I    T      Q+  I D  +          + V+DS+
Sbjct: 92  SESAISKQMIVDRGIDAERMMIVPVSTIEEFRTQSCRILDKYMEQDENQRKPMMFVLDSL 151

Query: 155 AALTPRAEIEGDMGESLP--GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
             L    E+E    +       +++L+  A R LT  + ++   ++  N     IG  + 
Sbjct: 152 GMLASNKEVEDVANDKQVRDMTKSQLIKGAFRVLTLKLGKANVPMLVTNHTYDVIGS-YI 210

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
             +   GG+ LK+ SS  + + +    KD   + GN  + K  K+++     QVE  + Y
Sbjct: 211 PTKEMGGGSGLKYASSTIIYLSKK-KEKDGTEVVGNIIKCKAQKSRLTKENSQVETRLYY 269

Query: 273 GEGISFFGELIDLGVKASIVDKSG 296
             G+  +  L++LG K  +  + G
Sbjct: 270 DRGLDRYYGLLELGEKYGVFKRKG 293


>gi|73918634|gb|AAZ93945.1| homologous recombination factor [Acinetobacter calcoaceticus]
 gi|73918652|gb|AAZ93954.1| homologous recombination factor [Acinetobacter calcoaceticus]
          Length = 124

 Score =  113 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 93/124 (75%), Positives = 109/124 (87%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IAQ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLVRSG
Sbjct: 1   LQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FINQ+R
Sbjct: 61  AIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFINQIR 120

Query: 205 MKIG 208
           MKIG
Sbjct: 121 MKIG 124


>gi|166714604|gb|ABY88033.1| RecA [Stenotrophomonas sp. LMG 11000]
          Length = 117

 Score =  113 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 78/117 (66%), Positives = 94/117 (80%), Gaps = 2/117 (1%)

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           RKL  +I     + +FINQ+RMKIGVM    SPETTTGGNALKFY+SVRLDIRR+G+IK 
Sbjct: 1   RKLRGNIKLPNTLEIFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKK 60

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
            D I GNQT++KVVKNK+A PFKQV  +I+YGEGIS  GELID+GV A +V+K+GAW
Sbjct: 61  GDEIIGNQTKIKVVKNKLAPPFKQVITEILYGEGISREGELIDMGVDAKLVEKAGAW 117


>gi|289496080|gb|ADC98080.1| recombination protein RecA [Vibrio sp. 7D08]
          Length = 131

 Score =  113 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 92/131 (70%), Positives = 112/131 (85%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L TIA +Q+   TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L R
Sbjct: 1   LTLETIAAAQRVNKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD+IVIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++  S C+ +FINQ
Sbjct: 61  SGAVDLIVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKTSNCMCIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|73918656|gb|AAZ93956.1| homologous recombination factor [Acinetobacter calcoaceticus DSM
           30006]
          Length = 124

 Score =  113 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 93/124 (75%), Positives = 109/124 (87%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IAQ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLVRSG
Sbjct: 1   LQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FINQ+R
Sbjct: 61  AIDMIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFINQIR 120

Query: 205 MKIG 208
           MKIG
Sbjct: 121 MKIG 124


>gi|289495964|gb|ADC98022.1| recombination protein RecA [Vibrio splendidus]
 gi|289496146|gb|ADC98113.1| recombination protein RecA [Vibrio splendidus]
 gi|289496216|gb|ADC98148.1| recombination protein RecA [Vibrio splendidus]
 gi|289496222|gb|ADC98151.1| recombination protein RecA [Vibrio splendidus]
 gi|289496258|gb|ADC98169.1| recombination protein RecA [Vibrio splendidus]
 gi|289496262|gb|ADC98171.1| recombination protein RecA [Vibrio splendidus]
 gi|289496324|gb|ADC98202.1| recombination protein RecA [Vibrio splendidus]
 gi|289496428|gb|ADC98254.1| recombination protein RecA [Vibrio splendidus]
 gi|289496464|gb|ADC98272.1| recombination protein RecA [Vibrio splendidus]
 gi|289496472|gb|ADC98276.1| recombination protein RecA [Vibrio splendidus]
 gi|289496544|gb|ADC98312.1| recombination protein RecA [Vibrio splendidus]
          Length = 131

 Score =  113 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 90/131 (68%), Positives = 113/131 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  I+ +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L R
Sbjct: 1   LTLELISAAQKVGKTCAFIDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGA+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 61  SGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|289495940|gb|ADC98010.1| recombination protein RecA [Vibrio sp. 1A02]
          Length = 130

 Score =  113 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 89/130 (68%), Positives = 112/130 (86%)

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA +QK G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RS
Sbjct: 1   TLECIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARS 60

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GA+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+
Sbjct: 61  GAIDVMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQI 120

Query: 204 RMKIGVMFGS 213
           RMKIGVMFG+
Sbjct: 121 RMKIGVMFGN 130


>gi|180050871|gb|ACB87049.1| RecA [Bacteriovorax sp. T2]
          Length = 134

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 96/134 (71%), Positives = 113/134 (84%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  +S+G LGLD+ LGIGG PKGRI+EIYGPESSGKTTL LH  A+ QK GGT AFVDA
Sbjct: 1   KIPAISTGCLGLDLGLGIGGVPKGRIIEIYGPESSGKTTLTLHIAAECQKEGGTVAFVDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD++YA  LGVD+ N LISQPD+GEQALEI DMLVRS AVD++++DSVAALTPRAE+
Sbjct: 61  EHALDTVYASNLGVDIPNTLISQPDSGEQALEIADMLVRSRAVDLLLVDSVAALTPRAEL 120

Query: 164 EGDMGESLPGMQAR 177
           EGDMG++  G+ AR
Sbjct: 121 EGDMGDTHLGLHAR 134


>gi|289496426|gb|ADC98253.1| recombination protein RecA [Vibrio sp. 14B12]
 gi|289496484|gb|ADC98282.1| recombination protein RecA [Vibrio sp. 14E10]
 gi|289496546|gb|ADC98313.1| recombination protein RecA [Vibrio sp. 14H12]
          Length = 131

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 91/131 (69%), Positives = 113/131 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +QK G TCAF+DAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L R
Sbjct: 1   LTLELIAAAQKVGKTCAFIDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGA+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 61  SGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|289496210|gb|ADC98145.1| recombination protein RecA [Vibrio sp. 12G02]
 gi|289496220|gb|ADC98150.1| recombination protein RecA [Vibrio sp. 12G12]
 gi|289496248|gb|ADC98164.1| recombination protein RecA [Vibrio sp. 12G01]
          Length = 130

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 87/130 (66%), Positives = 112/130 (86%)

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA +Q+ G TCAF+DAEHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RS
Sbjct: 1   TLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARS 60

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GA+D++V+DSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+
Sbjct: 61  GAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQI 120

Query: 204 RMKIGVMFGS 213
           RMKIGVMFG+
Sbjct: 121 RMKIGVMFGN 130


>gi|289496246|gb|ADC98163.1| recombination protein RecA [Vibrio sp. 12F12]
          Length = 131

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 92/131 (70%), Positives = 112/131 (85%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL SQPDTGEQALEI D L R
Sbjct: 1   LTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLXSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGA+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 61  SGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|73918594|gb|AAZ93925.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918596|gb|AAZ93926.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918598|gb|AAZ93927.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918600|gb|AAZ93928.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918602|gb|AAZ93929.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918604|gb|AAZ93930.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918606|gb|AAZ93931.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918608|gb|AAZ93932.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918610|gb|AAZ93933.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918612|gb|AAZ93934.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918614|gb|AAZ93935.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918616|gb|AAZ93936.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918618|gb|AAZ93937.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918620|gb|AAZ93938.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918622|gb|AAZ93939.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918624|gb|AAZ93940.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918626|gb|AAZ93941.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918628|gb|AAZ93942.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918630|gb|AAZ93943.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918632|gb|AAZ93944.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918636|gb|AAZ93946.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918638|gb|AAZ93947.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918640|gb|AAZ93948.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918644|gb|AAZ93950.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918646|gb|AAZ93951.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918648|gb|AAZ93952.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918658|gb|AAZ93957.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918660|gb|AAZ93958.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918662|gb|AAZ93959.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918664|gb|AAZ93960.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918666|gb|AAZ93961.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918670|gb|AAZ93963.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918672|gb|AAZ93964.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918674|gb|AAZ93965.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918676|gb|AAZ93966.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918678|gb|AAZ93967.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918680|gb|AAZ93968.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918682|gb|AAZ93969.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918684|gb|AAZ93970.1| homologous recombination factor [Acinetobacter genomosp. 13TU]
 gi|73918686|gb|AAZ93971.1| homologous recombination factor [Acinetobacter genomosp. 13TU]
 gi|73918688|gb|AAZ93972.1| homologous recombination factor [Acinetobacter baumannii]
 gi|73918690|gb|AAZ93973.1| homologous recombination factor [Acinetobacter baumannii]
 gi|294715539|gb|ADF30863.1| homologous recombination factor [Acinetobacter baumannii]
 gi|315274477|gb|ADU03669.1| homologous recombination factor [Acinetobacter baumannii]
          Length = 124

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 93/124 (75%), Positives = 110/124 (88%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IAQ QK+GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLVRSG
Sbjct: 1   LQAIAQCQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FINQ+R
Sbjct: 61  AIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFINQIR 120

Query: 205 MKIG 208
           MKIG
Sbjct: 121 MKIG 124


>gi|27651052|emb|CAD36692.1| homologous recombination factor [Streptococcus suis]
          Length = 118

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 63/118 (53%), Positives = 87/118 (73%), Gaps = 4/118 (3%)

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246
           +++K + +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+D+R    IK     KD   
Sbjct: 1   NKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVRGNTQIKGTGDKKDQNV 60

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           G +T+VK+VKNK+A PFK+   +IMYGEGIS  GELI++G    I+ K+GAW+S+  +
Sbjct: 61  GKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNRE 118


>gi|293629582|gb|ADE58558.1| recombinase A [Blastobacter aggregatus]
          Length = 134

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 88/107 (82%), Positives = 98/107 (91%)

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           G GG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL
Sbjct: 28  GCGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDL 87

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           +NLLISQPDTGEQALEITD LVRSG +D++V+ SVAALTPRAEIEG+
Sbjct: 88  QNLLISQPDTGEQALEITDTLVRSGXIDVLVVXSVAALTPRAEIEGE 134


>gi|289496432|gb|ADC98256.1| recombination protein RecA [Vibrio sp. 14C03]
          Length = 131

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 91/131 (69%), Positives = 113/131 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +QK G TCAF+DAEHALD IYA+KLGVD+ NLL+SQPDTGEQALEI D L R
Sbjct: 1   LTLEVIAAAQKQGKTCAFIDAEHALDPIYAQKLGVDIDNLLVSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++V+DSVAALTP+AEIEG+MG+S  G+QARL+SQ++RK+T ++  S C+ +FINQ
Sbjct: 61  SGAVDVLVVDSVAALTPKAEIEGEMGDSHMGLQARLLSQSMRKMTGNLKASNCMAIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|117549984|gb|ABK35096.1| homologous recombination factor [Acinetobacter baumannii]
          Length = 126

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 97/126 (76%), Positives = 114/126 (90%)

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK+GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLVRSGA+D+IV
Sbjct: 1   CQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIV 60

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FINQ+RMKIGVM
Sbjct: 61  VDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVM 120

Query: 211 FGSPET 216
           FGSPET
Sbjct: 121 FGSPET 126


>gi|2343256|gb|AAB67717.1| RecA [Bacteroides fragilis]
          Length = 129

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 89/129 (68%), Positives = 109/129 (84%)

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NL ISQPD GEQALEI +
Sbjct: 1   GKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLFISQPDNGEQALEIAE 60

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            L+RS A+DIIV+DSVAALTP+AEIEGDMG++  G+QARLMSQALRKLTS++S+++   +
Sbjct: 61  QLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTSAVSKTRTTCI 120

Query: 199 FINQMRMKI 207
           FINQ+R KI
Sbjct: 121 FINQLREKI 129


>gi|61806349|ref|YP_214708.1| UvsX RecA-like protein [Prochlorococcus phage P-SSM4]
 gi|61563893|gb|AAX46948.1| UvsX RecA-like protein [Prochlorococcus phage P-SSM4]
          Length = 336

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 71/334 (21%), Positives = 132/334 (39%), Gaps = 27/334 (8%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPE 76
           L  I +  G      +    S  +    + +GS   +  L     GG P  +I  I G  
Sbjct: 4   LKDIAKEIGNDYASLVSEGVSAGDTAGFIDTGSYIFNALLSGSIYGGIPNNKITAIAGET 63

Query: 77  SSGKTTLALHTIAQS--QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE--- 131
           S+GKT   L  +             + ++E A+        G+D   +L+    T +   
Sbjct: 64  STGKTFFCLGMVQHFLESNPDAGVIYFESESAISKQMIEDRGIDSNRMLLVPVTTVQEFR 123

Query: 132 -QALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEGDMG--ESLPGMQARLMSQALR 184
            QA++I D      A +    + V+DS+  L+   E+E      E+    +A+++    R
Sbjct: 124 LQAIKILDKYNEQTAEERKPLMFVLDSLGMLSTSKEVEDSEAGKETRDMTRAQVVKSIFR 183

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
            LT  + ++   L+  N     +G  +   +   GG+ LK+ +S  + + +    K+   
Sbjct: 184 VLTLKLGKANVPLIVTNHTYDVVGA-YIPTKEMGGGSGLKYAASTIVYLSKK-KEKNGKE 241

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
           + GN  + K  K+++      VE  + Y  G+  +  L++LG K  +       FS KG 
Sbjct: 242 VVGNIIKCKTAKSRLTKENSDVETRLYYDRGLDRYYGLLELGEKHGV-------FSRKGN 294

Query: 305 RLGQGRENS--KIFLRE-NIEIAENIESLLRQNA 335
           R+  G  +      L + +    E +   L + A
Sbjct: 295 RVVVGDSSVYPSAILADPDKYFTEELMEKLDEAA 328


>gi|289496044|gb|ADC98062.1| recombination protein RecA [Aliivibrio fischeri]
 gi|289496120|gb|ADC98100.1| recombination protein RecA [Aliivibrio fischeri]
 gi|289496218|gb|ADC98149.1| recombination protein RecA [Vibrio sp. 12G11]
 gi|289496436|gb|ADC98258.1| recombination protein RecA [Aliivibrio fischeri]
 gi|289496456|gb|ADC98268.1| recombination protein RecA [Vibrio sp. 14D06]
 gi|290795167|gb|ADD64598.1| RecA recombinase [Aliivibrio fischeri]
          Length = 131

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 89/131 (67%), Positives = 113/131 (86%)

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L R
Sbjct: 1   LTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALAR 60

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SGAVD++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ
Sbjct: 61  SGAVDVMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQ 120

Query: 203 MRMKIGVMFGS 213
           +RMKIGVMFG+
Sbjct: 121 IRMKIGVMFGN 131


>gi|105959010|gb|ABF81590.1| truncated RecA [Anaplasma phagocytophilum]
          Length = 87

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/83 (56%), Positives = 65/83 (78%), Gaps = 2/83 (2%)

Query: 8  NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
          +  DK +A++AA+ QI+R +G+G+IM+L  Q S  E +E VS+G + LD ALG+GG P+G
Sbjct: 7  SPSDKQRAVDAAIGQIERAFGRGSIMRL--QNSPVEAVECVSTGPIALDAALGVGGLPRG 64

Query: 68 RIVEIYGPESSGKTTLALHTIAQ 90
          RI+EI+GPESSG TTLALH IA+
Sbjct: 65 RIIEIFGPESSGGTTLALHVIAE 87


>gi|2343258|gb|AAB67718.1| RecA [Bacteroides uniformis]
          Length = 129

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 89/129 (68%), Positives = 110/129 (85%)

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GKTTLA+H IA++QK GG  AF+DAEHA D  YA KLGVD+ NLLISQPD GEQALEI +
Sbjct: 1   GKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLLISQPDNGEQALEIAE 60

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            L+RS A+DIIV+DSVAALTP+AEIEGDMG++  G+QARLMSQALRKLT+++S+++   +
Sbjct: 61  QLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTAAVSKTRTTCI 120

Query: 199 FINQMRMKI 207
           FINQ+R KI
Sbjct: 121 FINQLREKI 129


>gi|289496488|gb|ADC98284.1| recombination protein RecA [Vibrio sp. 14E12]
 gi|289496518|gb|ADC98299.1| recombination protein RecA [Vibrio sp. 14G07]
          Length = 130

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 88/130 (67%), Positives = 112/130 (86%)

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RS
Sbjct: 1   TLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARS 60

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVD++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+
Sbjct: 61  GAVDVMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQI 120

Query: 204 RMKIGVMFGS 213
           RMKIGVMFG+
Sbjct: 121 RMKIGVMFGN 130


>gi|73918668|gb|AAZ93962.1| homologous recombination factor [Acinetobacter baumannii]
          Length = 124

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 91/122 (74%), Positives = 108/122 (88%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IAQ QK+GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLVRSG
Sbjct: 1   LQAIAQCQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FINQ+R
Sbjct: 61  AIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFINQIR 120

Query: 205 MK 206
           MK
Sbjct: 121 MK 122


>gi|289496182|gb|ADC98131.1| recombination protein RecA [Vibrio sp. 12D07]
 gi|290795165|gb|ADD64597.1| RecA recombinase [Vibrio sp. F10]
 gi|290795169|gb|ADD64599.1| RecA recombinase [Vibrio sp. F10]
 gi|290795171|gb|ADD64600.1| RecA recombinase [Vibrio sp. F10]
          Length = 130

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 90/130 (69%), Positives = 112/130 (86%)

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA +Q+ G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RS
Sbjct: 1   TLELIAAAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARS 60

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GA+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+
Sbjct: 61  GAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQI 120

Query: 204 RMKIGVMFGS 213
           RMKIGVMFG+
Sbjct: 121 RMKIGVMFGN 130


>gi|226428992|gb|ACO55116.1| recombinase A [Allochromatium vinosum]
          Length = 124

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 94/122 (77%), Positives = 109/122 (89%)

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AFVDAEHALD +YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVDI+V+
Sbjct: 3   QKLGGTAAFVDAEHALDPVYAEKLGVNMTDLLVSQPDTGEQALEITDMLVRSNAVDIVVV 62

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT +I RS C ++FINQ+RMKIGVMF
Sbjct: 63  DSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCCVIFINQIRMKIGVMF 122

Query: 212 GS 213
           G 
Sbjct: 123 GC 124


>gi|238694903|ref|YP_002922097.1| UvsX [Enterobacteria phage JSE]
 gi|220029039|gb|ACL77974.1| UvsX [Enterobacteria phage JSE]
          Length = 356

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 59/275 (21%), Positives = 102/275 (37%), Gaps = 15/275 (5%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIG---GFPKGRIVEIYGPESSGKTTLALHTI--AQS 91
           S+ S F       +    L+IA       GF  G I    GP    K+ + L  +     
Sbjct: 20  SKSSFFNEKTNTRTKIPMLNIAFSGDLKKGFQSGLIF-FAGPSKHFKSNMGLTCVSAYMK 78

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ---ALEITDMLVRSGAVDI 148
           Q     C F D+E  +   Y   +GVD   ++       E+    +      +      I
Sbjct: 79  QNPDAACLFFDSEFGITPAYLESMGVDPDRVVHVPIKNIEELKFEIMNQLEQITREDKVI 138

Query: 149 IVIDSVAALTPRAEIEGDMGE--SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           I IDS+  L  + E+E  + E  +    +A+ +    R +T  ++ +    + IN     
Sbjct: 139 IFIDSIGNLASKKEVEDAINEKSAQDMTRAKALKGLFRMVTPYLTMNDIPCIAINHTYE- 197

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
              MF     + G  A   YS+  + I      K+   ITG    +   K++      + 
Sbjct: 198 TQEMFSKTVMSGGTGA--MYSANEVFIIGRRQQKEGTEITGYDFILNAEKSRTVKEKSKF 255

Query: 267 EFDIMYGEGISFFGELIDLGVKAS-IVDKSGAWFS 300
              + +  GI  +  L++L V+   +V  S  W+S
Sbjct: 256 PISVTFSGGIDPYSGLLELAVELGWVVKPSNGWYS 290


>gi|73918650|gb|AAZ93953.1| homologous recombination factor [Acinetobacter calcoaceticus]
          Length = 124

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 90/124 (72%), Positives = 108/124 (87%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IAQ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLVRSG
Sbjct: 1   LQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A+D+IV+DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN +R
Sbjct: 61  AIDMIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFINHIR 120

Query: 205 MKIG 208
           +K+G
Sbjct: 121 IKVG 124


>gi|321399588|emb|CBJ49368.1| recombinase A [Marichromatium fluminis]
          Length = 125

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 97/125 (77%), Positives = 112/125 (89%)

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            AFVDAEHALD +YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVDI+VIDSVAAL
Sbjct: 1   AAFVDAEHALDPVYAEKLGVNMNDLLVSQPDTGEQALEITDMLVRSNAVDIVVIDSVAAL 60

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
           TP+AEIEG+MG+S  G+QARLMSQALRKLT++I RS C ++FINQ+RMKIGVMFGSPE T
Sbjct: 61  TPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKRSNCCVIFINQIRMKIGVMFGSPEAT 120

Query: 218 TGGNA 222
            GGN 
Sbjct: 121 PGGNN 125


>gi|312262438|gb|ADQ52733.1| UvsX RecA-like recombination protein [Aeromonas phage PX29]
          Length = 411

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/339 (17%), Positives = 124/339 (36%), Gaps = 17/339 (5%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTI--AQS 91
           S+   F   + V +    L++A+     GG   G +  + GP    K+ L L  I     
Sbjct: 33  SESKFFNDKDSVRTRVPLLNLAMSGELDGGLAPG-LTVLAGPSKHFKSNLGLVFIAAYMR 91

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA---LEITDMLVRSGAVDI 148
           +     C F D E      Y    GVD+  ++       E+    +      +  G   I
Sbjct: 92  KYPDAVCLFFDNEFGSTPGYFESQGVDVSRVIHCPFKNIEELKFDIVKKLEAIERGDRVI 151

Query: 149 IVIDSVAALTPRAEIEGDMGESLP--GMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           + IDS+     + E++  + E       +A+ +    R +T  ++ +    + I  +   
Sbjct: 152 VFIDSIGNAASKKEVDDAIDEKSVSDMTRAKQLKSLTRIMTPYLTMNDIPAIAIAHVY-D 210

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
              ++     + G        +V +  R     KD   + G    + + K++      ++
Sbjct: 211 TQELYSKKVVSGGTGITYSADTVIIIGR--QQEKDGKELLGYNFVLNMEKSRFVKEQSKL 268

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDK-SGAWFS--FKGQRLGQGRENSKIFLRENIEI 323
             ++ +  GI+ +  ++D+ +    V K S  WFS  F  +  G+  E  + + R +   
Sbjct: 269 PLEVTFQGGINTYSGMLDIALDIGFVVKPSNGWFSRAFLDEETGELVEEDRKWRRADTNC 328

Query: 324 AENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
            E  + +        A S   +    +  D   D+ D++
Sbjct: 329 LEFWKPMFSHQPFKDACSDAFKLKSVSVKDEVFDEVDDL 367


>gi|289496150|gb|ADC98115.1| recombination protein RecA [Vibrio sp. 12B09]
 gi|289496442|gb|ADC98261.1| recombination protein RecA [Vibrio sp. 14C08]
          Length = 130

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 89/130 (68%), Positives = 112/130 (86%)

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA +Q+ G TCAF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI D L RS
Sbjct: 1   TLELIAAAQRVGKTCAFIDAEHALDPIYAKKLGVNIDELLVSQPDTGEQALEICDALARS 60

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GA+D+IVIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+
Sbjct: 61  GAIDVIVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQI 120

Query: 204 RMKIGVMFGS 213
           RMKIGVMFG+
Sbjct: 121 RMKIGVMFGN 130


>gi|180050867|gb|ACB87047.1| RecA [Bacteriovorax sp. T1]
          Length = 142

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 85/122 (69%), Positives = 100/122 (81%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            PKGRI+EIYGPESSGKTTL LH  A+ QK GGT AFVDAEHALD++YA  LGVD+ N L
Sbjct: 21  VPKGRIIEIYGPESSGKTTLTLHIAAECQKEGGTVAFVDAEHALDTVYASNLGVDIPNTL 80

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           ISQPD+GEQALEI DMLVRS AVD++++DSVAALTPRAE+EGDMG++  G+ AR    + 
Sbjct: 81  ISQPDSGEQALEIADMLVRSRAVDLLLVDSVAALTPRAELEGDMGDTHLGLHARSTHGSS 140

Query: 184 RK 185
            K
Sbjct: 141 SK 142


>gi|289609880|emb|CBI60370.1| unnamed protein product [Sordaria macrospora]
          Length = 89

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 59/91 (64%), Positives = 78/91 (85%), Gaps = 2/91 (2%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG + ++   +E +S+GSLGLDIALG+GG P+GR++E+YGPESSGKTTLALH IA++Q
Sbjct: 1   MKLGQKEAM--QVEAISTGSLGLDIALGVGGLPRGRVIEVYGPESSGKTTLALHVIAEAQ 58

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
           K GGT AFVDAEHALD +YA+KLGV++  L+
Sbjct: 59  KNGGTAAFVDAEHALDPVYAKKLGVNIDELI 89


>gi|289495960|gb|ADC98020.1| recombination protein RecA [Vibrio sp. 1A12]
 gi|289495976|gb|ADC98028.1| recombination protein RecA [Vibrio sp. 1B11]
 gi|289496006|gb|ADC98043.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496188|gb|ADC98134.1| recombination protein RecA [Vibrio sp. 12D11]
 gi|289496214|gb|ADC98147.1| recombination protein RecA [Vibrio sp. 12G08]
 gi|289496276|gb|ADC98178.1| recombination protein RecA [Vibrio sp. 13A12]
 gi|289496338|gb|ADC98209.1| recombination protein RecA [Vibrio sp. 13E09]
 gi|289496410|gb|ADC98245.1| recombination protein RecA [Vibrio sp. 14B03]
 gi|289496480|gb|ADC98280.1| recombination protein RecA [Vibrio tasmaniensis]
 gi|289496498|gb|ADC98289.1| recombination protein RecA [Vibrio sp. 14F06]
 gi|289496508|gb|ADC98294.1| recombination protein RecA [Vibrio sp. 14F11]
          Length = 130

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 91/130 (70%), Positives = 112/130 (86%)

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA +QK G TCAFVDAEHALD IYA+KLGVD+  LL+SQPDTGEQALEI D L RS
Sbjct: 1   TLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARS 60

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GA+D++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+
Sbjct: 61  GAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQI 120

Query: 204 RMKIGVMFGS 213
           RMKIGVMFG+
Sbjct: 121 RMKIGVMFGN 130


>gi|180050877|gb|ACB87052.1| RecA [Bacteriovorax sp. T5]
          Length = 133

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 96/131 (73%), Positives = 112/131 (85%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I  +S+G LGLD+ LGIGG PKGRI+EIYGPESSGKTTL LH  A+ QK GGT AFVD
Sbjct: 2   EKIPAISTGCLGLDLGLGIGGVPKGRIIEIYGPESSGKTTLTLHIAAECQKEGGTVAFVD 61

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD++YA  LGVD+ N LISQPD+GEQALEI DMLVRSGAVD++++DSVAALTPRAE
Sbjct: 62  AEHALDTVYASNLGVDIPNTLISQPDSGEQALEIADMLVRSGAVDLLIVDSVAALTPRAE 121

Query: 163 IEGDMGESLPG 173
           +EGDMG++  G
Sbjct: 122 LEGDMGDTHLG 132


>gi|73918642|gb|AAZ93949.1| homologous recombination factor [Acinetobacter calcoaceticus]
          Length = 124

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 91/124 (73%), Positives = 108/124 (87%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IAQ QK GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLVRSG
Sbjct: 1   LQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           A+D+IV+DSVAALTP+AEI+G+MG+S  G+QARLMSQALRK+T +  RS C+ +FINQ+R
Sbjct: 61  AIDLIVVDSVAALTPKAEIDGEMGDSHMGLQARLMSQALRKITGNAKRSNCMGIFINQIR 120

Query: 205 MKIG 208
           MK+G
Sbjct: 121 MKMG 124


>gi|289496398|gb|ADC98239.1| recombination protein RecA [Vibrio sp. 14A08]
          Length = 130

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 88/130 (67%), Positives = 112/130 (86%)

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  IA +Q+ G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RS
Sbjct: 1   TLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARS 60

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           GAVD++VIDSVAALTP+AEIEG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+
Sbjct: 61  GAVDVMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQI 120

Query: 204 RMKIGVMFGS 213
           RMKIGVMFG+
Sbjct: 121 RMKIGVMFGN 130


>gi|290750596|gb|ADD52187.1| recombinase A [Rickettsia massiliae]
          Length = 129

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 96/129 (74%), Positives = 116/129 (89%)

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
           KLGV++  L+ISQPDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++   
Sbjct: 1   KLGVNIDELIISQPDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMA 60

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
            QARLMSQALRKLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DI
Sbjct: 61  SQARLMSQALRKLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDI 120

Query: 234 RRVGSIKDK 242
           RR+GSIK+ 
Sbjct: 121 RRIGSIKES 129


>gi|226377784|ref|YP_002790833.1| putative recombinase A [Lactobacillus phage Lb338-1]
 gi|225921562|gb|ACO37075.1| putative recombinase A [Lactobacillus phage Lb338-1]
          Length = 400

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 73/318 (22%), Positives = 134/318 (42%), Gaps = 37/318 (11%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           +++ +     D  +G GG P GRI EIY PE  GK+T  ++    +   G    ++DAE 
Sbjct: 35  DMLPTFIPQWDYIMG-GGIPFGRITEIYAPEQVGKSTFMIYLNRVASALGADTFWLDAEG 93

Query: 106 ALDSIYARKLGVDLKNLLISQPD-------TGEQALEITDMLVRSGAVD--------IIV 150
             D     +LGVD  +  I  PD         EQ     + ++ +   D        +++
Sbjct: 94  TSDGDRMEELGVDPAHTFIYSPDKNNGESLNVEQVGATIENIINTYKDDESRKDTPLLVI 153

Query: 151 IDSVAALTPRAEIEGDMGES-LPGMQARLMSQALRKLTSSISRSKCILVFINQMR--MKI 207
            DS+     +AE   D GE    G QA  +++ +RK+T  +      LV INQ+R     
Sbjct: 154 WDSIGGTITQAEQNTDFGEEGQRGRQAAAVTKLVRKITPMLRDVNIALVAINQVRANQDA 213

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK------DSITGNQTRVKVVKNKMAS 261
              +       GG ALK   ++RL++ +   IK K      D+  G+   +K+ K+K + 
Sbjct: 214 MNKYAPKTIAGGGEALKHADALRLELAKSTQIKGKYKGESDDTYEGHLITMKIDKSKQSR 273

Query: 262 PFKQVEF---------DIMYGEGISFFGELIDLGVKASIVDKSGAWFSF---KGQRLGQG 309
           P ++ +          +  Y  GI +   +     +  ++  SG +  +    G+ +   
Sbjct: 274 PHQKAQAALLAGWLLKNNAYLNGIDYEYNMYMDAKELGLIKASGGYRKYTTLAGEEINAY 333

Query: 310 RENSKIFLRENIEIAENI 327
             +    L+++  + + +
Sbjct: 334 EVDFLKRLKDDPNLTKEL 351


>gi|213852304|ref|ZP_03381836.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi
          str. M223]
          Length = 86

 Score =  109 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 46/71 (64%), Positives = 56/71 (78%), Gaps = 2/71 (2%)

Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
          +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GSL LDIALG GG P GRIV
Sbjct: 6  NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63

Query: 71 EIYGPESSGKT 81
          EIYGPESSGKT
Sbjct: 64 EIYGPESSGKT 74


>gi|38639939|ref|NP_943894.1| UvsX [Aeromonas phage Aeh1]
 gi|33414628|gb|AAQ17671.1| UvsX [Aeromonas phage Aeh1]
          Length = 411

 Score =  109 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 58/338 (17%), Positives = 122/338 (36%), Gaps = 17/338 (5%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTI--AQSQ 92
               F   + V +    L++A+     GG   G +  + GP    K+ L+L  +     +
Sbjct: 34  DSKFFNDKDCVRTRVPLLNLAMSGELDGGLTPG-LTVLAGPSKHFKSNLSLVFVAAYLRK 92

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA---LEITDMLVRSGAVDII 149
                C F D E      Y    GVD+  ++       E+    +      +  G   I+
Sbjct: 93  YPDAVCIFFDNEFGSTPGYFESQGVDISRVIHCPFKNIEELKFDIVKKLEAIERGDRVIV 152

Query: 150 VIDSVAALTPRAEIEGDMGESLP--GMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
            +DS+     + EI+  + E       +A+ +    R +T  ++ +    + +       
Sbjct: 153 FVDSIGNAASKKEIDDAIDEKSVSDMTRAKQIKSLTRMMTPYLTVNDIPAIMVAHTY-DT 211

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
             M+     + G        +V +  R     KD   + G    + + K++      ++ 
Sbjct: 212 QEMYSKKVVSGGTGITYSSDTVIIIGR--QQEKDGKELLGYNFVLNMEKSRFVKEQSKLP 269

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDK-SGAWFS--FKGQRLGQGRENSKIFLRENIEIA 324
            ++ +  GI+ +  ++D+ ++   V K S  WFS  F  +  G+  E  + + R +    
Sbjct: 270 LEVTFQGGINTYSGMLDIALEVGFVVKPSNGWFSRAFLDEETGELVEEDRKWRRADTNCL 329

Query: 325 ENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           E  + +        A S + +       D   D+ D +
Sbjct: 330 EFWKPMFAHQPFKTACSDMFKLKSVAVKDEVFDEVDEL 367


>gi|33620615|ref|NP_891595.1| UvsX [Enterobacteria phage RB49]
 gi|157311325|ref|YP_001469368.1| UvsX RecA-like recombination protein [Enterobacteria phage Phi1]
 gi|33438515|gb|AAL87837.2|AF410869_9 UvsX [Enterobacteria phage RB49]
 gi|149380529|gb|ABR24534.1| UvsX RecA-like recombination protein [Enterobacteria phage Phi1]
          Length = 356

 Score =  109 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 60/275 (21%), Positives = 103/275 (37%), Gaps = 15/275 (5%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIG---GFPKGRIVEIYGPESSGKTTLALHTI--AQS 91
           S+ S F       +    L+IA       GF  G I    GP    K+ + L  +     
Sbjct: 20  SKSSFFNEKTNTRTKIPMLNIAFSGDLKKGFQSGLIF-FAGPSKHFKSNMGLTCVSAYMK 78

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ---ALEITDMLVRSGAVDI 148
           Q     C F D+E  + S Y   +GVD   ++       E+    +      +      I
Sbjct: 79  QNPDAACLFFDSEFGITSAYLESMGVDPDRVVHVPIKNIEELKFEIMNQLEQITREDKVI 138

Query: 149 IVIDSVAALTPRAEIEGDMGE--SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           I IDS+  L  + E+E  + E  +    +A+ +    R +T  ++ +    + IN     
Sbjct: 139 IFIDSIGNLASKKEVEDAINEKSAQDMTRAKALKGLFRMVTPYLTMNDIPCIAINHTYE- 197

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
              MF     + G  A   YS+  + I      K+   ITG    +   K++      + 
Sbjct: 198 TQEMFSKTVMSGGTGA--MYSANEVFIIGRRQQKEGTEITGYDFILNAEKSRTVKEKSKF 255

Query: 267 EFDIMYGEGISFFGELIDLGVKAS-IVDKSGAWFS 300
              + +  GI  +  L++L V+   +V  S  W+S
Sbjct: 256 PISVTFSGGIDPYSGLLELAVELGWVVKPSNGWYS 290


>gi|226088211|dbj|BAH36957.1| recombinase A [Lactobacillus kefiri]
          Length = 125

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 82/125 (65%), Positives = 106/125 (84%)

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T+ALH +A+  K GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGEQ L+ITD LV
Sbjct: 1   TVALHAVAEVPKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLQITDALV 60

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
            SGA+DI+VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +IS++K I +FIN
Sbjct: 61  TSGAIDIVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISKTKTIAIFIN 120

Query: 202 QMRMK 206
           Q+R K
Sbjct: 121 QIREK 125


>gi|6694849|gb|AAF25434.1|AF214787_1 RecA protein [Arthrobacter sulfureus]
          Length = 127

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 92/127 (72%), Positives = 111/127 (87%)

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA+KLGVD   LL+SQPDTGEQALEI DMLV SG+VDI+VIDSVAAL PRAEIEG+MG+S
Sbjct: 1   YAKKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSVDIVVIDSVAALVPRAEIEGEMGDS 60

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
             G+QARLMSQALRK+T  +S+++   +FINQ+R KIGVMFGSPETTTGG ALKFY+S+R
Sbjct: 61  HVGLQARLMSQALRKITGRLSQTRTTAIFINQLREKIGVMFGSPETTTGGKALKFYASIR 120

Query: 231 LDIRRVG 237
           +D+RR+ 
Sbjct: 121 IDVRRIE 127


>gi|180050861|gb|ACB87044.1| RecA [Bacteriovorax sp. MIA1]
          Length = 135

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 93/127 (73%), Positives = 109/127 (85%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
             +S+G LGLD+ LGIGG PKGRI+EIYGPESSGKTTL LH  A+ QK GGT AFVDAEH
Sbjct: 9   PAISTGCLGLDLGLGIGGVPKGRIIEIYGPESSGKTTLTLHIAAECQKEGGTVAFVDAEH 68

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD++YA  LGVD+ N LISQPD+GEQALEI DMLVRSGAVD++++DSVAALTPRAE+EG
Sbjct: 69  ALDTVYASNLGVDIPNTLISQPDSGEQALEIADMLVRSGAVDLLIVDSVAALTPRAELEG 128

Query: 166 DMGESLP 172
           DMG++  
Sbjct: 129 DMGDTHM 135


>gi|58532946|ref|YP_195169.1| UvsX RecA-like [Synechococcus phage S-PM2]
 gi|58331413|emb|CAF34199.1| UvsX RecA-like [Synechococcus phage S-PM2]
          Length = 343

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 63/315 (20%), Positives = 126/315 (40%), Gaps = 23/315 (7%)

Query: 35  LGSQGSIFEGIEV-VSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
             S+G     +E  V +GS   +  +     GG P  +I  + G   +GKT   L  +  
Sbjct: 18  FASEGVAAGDVESFVDTGSYIFNALVSGSIFGGIPSNKITALAGESGTGKTFFCLSVVRN 77

Query: 91  SQKTGGTC--AFVDAEHALDSIYARKLGVDLKNLLISQPDT----GEQALEITDMLVRSG 144
              T       + + E A+        G+D   ++I   DT      QA+ I D  +   
Sbjct: 78  FLNTDPDAGVIYFETESAISKQMIESRGIDSTRMIIFPVDTIEDFRTQAVRIIDKYMEQN 137

Query: 145 AVD----IIVIDSVAALTPRAEIEGDMGESLP--GMQARLMSQALRKLTSSISRSKCILV 198
             +    + V+DS+  L  + E+E    +       +A+++  A R LT  + ++   ++
Sbjct: 138 KSERKPLMFVLDSLGMLATKKEVEDASNDKQVRDMTKAQIVKSAFRILTLKMGKANIPML 197

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
             N     +G    + E   GG +   YS+  +        KD   + GN  + +  K++
Sbjct: 198 VTNHTYDVVGSYVPTKEM--GGGSGLKYSASTIVYLGKKKEKDGTDLVGNIIKCEAKKSR 255

Query: 259 MASPFKQVEFDIMYGE-GISFFGELIDLGVKASIVDKSGAWFSFKGQRLG--QGRENSKI 315
           +     +VE  + + + G+  +  +++LG +A +   +   +   G+++   Q   N   
Sbjct: 256 LTREGSKVETRLFFDQRGLERYYGMLELGERAGLWKNTAGRYEINGKKVYGKQILANPDE 315

Query: 316 FLRENIEIAENIESL 330
           F  E  EI + ++  
Sbjct: 316 FFTE--EILQELDKQ 328


>gi|37956374|gb|AAP15361.1| RecA [Geothermobacter ehrlichii]
          Length = 165

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 101/165 (61%), Positives = 128/165 (77%), Gaps = 1/165 (0%)

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           KG +       S  KTTLALH ++++QK GG  A VDAEHALD  YAR+LGV   +LL+S
Sbjct: 1   KGDLHMGGARPSIAKTTLALHIVSEAQKKGGIAAXVDAEHALDIQYARQLGVKTDDLLVS 60

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           QPDTGEQALEIT+++VRSG + ++V+ SVAAL PRAE EG+ G+S  G+QARLMSQALRK
Sbjct: 61  QPDTGEQALEITEVMVRSGXIXVLVVXSVAALVPRAEXEGEXGDSHXGLQARLMSQALRK 120

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
           LT++IS+S   ++FIN +RMKIGVMFG+PETT+GGNA   +  VR
Sbjct: 121 LTATISKSNXCVIFINXIRMKIGVMFGNPETTSGGNA-XIWQXVR 164


>gi|310722609|ref|YP_003969432.1| UvsX [Aeromonas phage phiAS5]
 gi|306021452|gb|ADM79986.1| UvsX [Aeromonas phage phiAS5]
          Length = 410

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 57/338 (16%), Positives = 122/338 (36%), Gaps = 17/338 (5%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTI--AQSQ 92
               F   + + +    L++A+     GG   G +  + GP    K+ L+L  +     +
Sbjct: 34  DSKFFNDKDSIRTRVPLLNLAMSGELDGGLAPG-LTVLAGPSKHFKSNLSLVFVAAYMRK 92

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA---LEITDMLVRSGAVDII 149
                C F D E      Y +  GVD+  ++       E+    +      +  G   I+
Sbjct: 93  YPDAVCLFFDNEFGSTPGYFQSQGVDISRVIHCPFKNIEELKFDIVKKLEAIERGERVIV 152

Query: 150 VIDSVAALTPRAEIEGDMGESLP--GMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
            +DS+     + E++  + E       +A+ +    R +T  ++      + +       
Sbjct: 153 FVDSIGNAASKKEVDDAIDEKSVSDMTRAKQIKSLTRIMTPYLTFLDIPAIMVAHTY-DT 211

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
             M+     + G        +V +  R     KD   + G    + + K++      ++ 
Sbjct: 212 QEMYSKKVVSGGTGITYSADTVIIIGR--QQEKDGKELLGYNFILNMEKSRFVREQSKLP 269

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDK-SGAWFS--FKGQRLGQGRENSKIFLRENIEIA 324
            ++ +  GI+ +  ++D+ +    V K S  WFS  F  +  G+  E  + + R +    
Sbjct: 270 LEVTFQGGINTYSGMLDIALDVGFVVKPSNGWFSRAFLDEETGELIEEDRKWRRADTSCL 329

Query: 325 ENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362
           E  + L        A S   +    +  D   D+ D++
Sbjct: 330 EFWKPLFSHEPFKRACSDAYKLKAVSVKDEVFDEVDDL 367


>gi|327197785|ref|YP_004301483.1| gp150 [Brochothrix phage A9]
 gi|299810385|gb|ADJ53184.1| gp150 [Brochothrix phage A9]
          Length = 392

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 130/300 (43%), Gaps = 22/300 (7%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
             +D  L  GGFP GR  E+   +  GK+  A+     + +      ++D E        
Sbjct: 46  PQIDSQLA-GGFPFGRFSELSAKDGVGKSMTAIQATKIAVQMNAVVVWIDVEGTASKEQL 104

Query: 113 RKLGVDLKNLLISQPDTG-----------EQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
            ++G+ +  +++ QPD             E   ++ +M+       +I+ DS+       
Sbjct: 105 SRMGIPVDRVIVRQPDPKSSEPLTVESVGESIADMLEMIAGQDIPLLIIWDSIGQTPGAK 164

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG-VMFGSPETTTGG 220
            ++ D G   PG+ A+ ++  ++KL   I+    + + INQ+R  +G  MFG   +T GG
Sbjct: 165 TMDKDFGNEQPGIHAKAVTNVVQKLAPFITTQNVLFMGINQVRDNMGATMFGPKTSTPGG 224

Query: 221 NALKFYSSVRLDIRRVGS----IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276
             LK Y+SVR ++  VG     IK +     ++ R K+ K+K++ P  Q E  +  G+G 
Sbjct: 225 RGLKHYASVRFELSAVGQLKRSIKGEQVYYAHKVRYKLAKSKVSIPNSQGEAVLFAGDGF 284

Query: 277 SFFGELIDLGVKASIV--DKSGAWFSFK-GQRLGQGRENSKIFLR--ENIEIAENIESLL 331
           +             ++     GA ++   G+ L    +    +L   EN EI + I   L
Sbjct: 285 NEIVNTYYTARNIGLLGTKTGGATYTTDAGEELSMAEQVFIEYLLDPENFEITKEIHQKL 344


>gi|210163789|gb|ACJ09804.1| recombinase A [Marichromatium bheemlicum]
          Length = 122

 Score =  106 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 92/119 (77%), Positives = 109/119 (91%)

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AFVDAEHALD +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++
Sbjct: 4   QKRGGTAAFVDAEHALDPVYAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIV 63

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVM
Sbjct: 64  DSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVM 122


>gi|210163634|gb|ACJ09798.1| recombinase A [Marichromatium purpuratum]
 gi|210163660|gb|ACJ09799.1| recombinase A [Marichromatium purpuratum]
 gi|210163689|gb|ACJ09800.1| recombinase A [Marichromatium sp. SW26]
 gi|210163714|gb|ACJ09801.1| recombinase A [Marichromatium sp. CLA37]
 gi|210163745|gb|ACJ09802.1| recombinase A [Marichromatium gracile]
 gi|210163774|gb|ACJ09803.1| recombinase A [Marichromatium sp. WS-2008]
 gi|210163816|gb|ACJ09805.1| recombinase A [Marichromatium sp. MP1]
 gi|210163840|gb|ACJ09806.1| recombinase A [Marichromatium indicum]
          Length = 122

 Score =  106 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 92/119 (77%), Positives = 109/119 (91%)

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AFVDAEHALD +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++
Sbjct: 4   QKLGGTAAFVDAEHALDPVYAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIV 63

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVM
Sbjct: 64  DSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVM 122


>gi|326783847|ref|YP_004324241.1| UvsX RecA-like protein [Synechococcus phage S-SSM7]
 gi|310003859|gb|ADO98254.1| UvsX RecA-like protein [Synechococcus phage S-SSM7]
          Length = 333

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 73/334 (21%), Positives = 139/334 (41%), Gaps = 27/334 (8%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPE 76
           L +I +  G     QL S+    E  E V +GS   +  +     GG  + +I  I G  
Sbjct: 4   LKEIVKEIGDE-YTQLASEAESTE--EYVDTGSYIFNGLVSGSIFGGVSRNKITAIAGES 60

Query: 77  SSGKTTLALHTIAQS--QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           S+GKT  +L  +         G C + D E A++       G+DL+ L++    T E+  
Sbjct: 61  STGKTFFSLAVVKNFLDSNPDGYCLYFDTEAAVNRGLLESRGIDLERLVVVNVVTIEEFR 120

Query: 135 EITDMLVR--------SGAVDIIVIDSVAALTPRAEIEGDMGESLP--GMQARLMSQALR 184
                 V         +    + V+DS+  L+   EI   + +       +++L+  A R
Sbjct: 121 SKALRAVDIYLKTEEGNRKPCMFVLDSLGMLSTEKEIRDALDDKQVRDMTKSQLVKGAFR 180

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
            LT  + ++   L+  N     IG  +   +   GG+ LK+ +S  + + +    K+   
Sbjct: 181 MLTLKLGQANIPLIVTNHTYDVIGS-YVPTKEMGGGSGLKYAASTIIYLSKA-KEKEGTE 238

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGE-GISFFGELIDLGVKASIVDKSGAWFSFKG 303
           + GN  + K  K++++   K+V+  + Y E G+  +  L++LG    +       +   G
Sbjct: 239 VVGNIIKAKTAKSRLSKENKEVKIRLYYDERGLDRYYGLLELGELGGLWKNVAGRYEIDG 298

Query: 304 QRLGQGRENSKIFLRENIE-IAENIESLLRQNAG 336
           +++      +K  L    E   + + + L + AG
Sbjct: 299 KKVY-----AKKILASPEEYFTDEVMAKLEEIAG 327


>gi|321399590|emb|CBJ49369.1| recombinase A [Marichromatium sp. JA498]
          Length = 121

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 93/121 (76%), Positives = 110/121 (90%)

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            AFVDAEHALD +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAAL
Sbjct: 1   AAFVDAEHALDPVYAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAAL 60

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
           TP+AEIEG+MG+S  G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMFGSPE T
Sbjct: 61  TPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSPEAT 120

Query: 218 T 218
            
Sbjct: 121 P 121


>gi|170290825|ref|YP_001737641.1| DNA repair and recombination protein RadA [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170174905|gb|ACB07958.1| DNA repair and recombination protein RadA [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 336

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 57/269 (21%), Positives = 102/269 (37%), Gaps = 36/269 (13%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K ++AA S++        +M         + ++ +++GS  LD  LG GG     I EI
Sbjct: 74  QKIIQAARSKLNID-----VMSAYDFYQQRKAVQRITTGSKALDELLG-GGVETQSITEI 127

Query: 73  YGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKLGVD-------- 118
           YGP  SGKT          Q        G    ++D E         ++           
Sbjct: 128 YGPYGSGKTQFCHQMAVTVQLDEEKGGLGRGAMYIDTEGTFRPERILQIAERFKLDPEHT 187

Query: 119 LKNLLISQPDTGEQAL---EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           LKN+L ++  T +  +   E  +  ++   + +I++DS+ +   R E  G         +
Sbjct: 188 LKNILYARAFTSDHQMIVTERAESYIKERDIGLIIVDSLISHF-RGEYVGR---ETLAER 243

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
            + +++ L KL          ++  NQ+       FG P    GG+ L    + RL I+R
Sbjct: 244 QQKLNKYLHKLLRLALGYNMAVIVTNQVVADPTAFFGDPNKPAGGHVLGHGVTARLYIKR 303

Query: 236 VGSIKDKDSITGNQTRVKVVKNKMASPFK 264
                       ++  +K+VK+       
Sbjct: 304 GKK---------DRRVIKLVKSPYLPEGT 323


>gi|124483945|emb|CAM32790.1| RecA protein [Aeromonas sp. V15]
 gi|124483949|emb|CAM32792.1| RecA protein [Aeromonas hydrophila]
          Length = 116

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 84/116 (72%), Positives = 102/116 (87%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA++Q  G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD
Sbjct: 1   IAEAQXKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVD 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           +I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+
Sbjct: 61  VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQI 116


>gi|124483985|emb|CAM32810.1| RecA protein [Aeromonas sp. F474]
          Length = 115

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 85/115 (73%), Positives = 102/115 (88%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA++QK G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD
Sbjct: 1   IAEAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVD 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           +I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ
Sbjct: 61  VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQ 115


>gi|124483921|emb|CAM32778.1| RecA protein [Aeromonas media]
 gi|124483929|emb|CAM32782.1| RecA protein [Aeromonas sp. V47]
 gi|124483931|emb|CAM32783.1| RecA protein [Aeromonas media]
 gi|124483933|emb|CAM32784.1| RecA protein [Aeromonas sp. V69]
 gi|124483939|emb|CAM32787.1| RecA protein [Aeromonas enteropelogenes]
 gi|124483941|emb|CAM32788.1| RecA protein [Aeromonas sp. F458]
 gi|124483943|emb|CAM32789.1| RecA protein [Aeromonas sp. F589]
 gi|124483951|emb|CAM32793.1| RecA protein [Aeromonas hydrophila subsp. ranae]
 gi|124483953|emb|CAM32794.1| RecA protein [Aeromonas sp. V30]
 gi|124483955|emb|CAM32795.1| RecA protein [Aeromonas sp. V83]
 gi|124483957|emb|CAM32796.1| RecA protein [Aeromonas sp. V97]
 gi|124483959|emb|CAM32797.1| RecA protein [Aeromonas caviae]
 gi|124483961|emb|CAM32798.1| RecA protein [Aeromonas sp. V39]
 gi|124483963|emb|CAM32799.1| RecA protein [Aeromonas hydrophila subsp. anaerogenes]
 gi|124483965|emb|CAM32800.1| RecA protein [Aeromonas sp. F507C]
 gi|124483967|emb|CAM32801.1| RecA protein [Aeromonas hydrophila subsp. dhakensis]
 gi|124483969|emb|CAM32802.1| RecA protein [Aeromonas jandaei]
 gi|124483971|emb|CAM32803.1| RecA protein [Aeromonas sp. JF2638]
 gi|124483973|emb|CAM32804.1| RecA protein [Aeromonas sp. JF2853]
 gi|124483975|emb|CAM32805.1| RecA protein [Aeromonas veronii bv. sobria]
 gi|124483977|emb|CAM32806.1| RecA protein [Aeromonas allosaccharophila]
 gi|124483979|emb|CAM32807.1| RecA protein [Aeromonas veronii bv. veronii]
 gi|124483983|emb|CAM32809.1| RecA protein [Aeromonas veronii]
 gi|124483987|emb|CAM32811.1| RecA protein [Aeromonas molluscorum]
          Length = 116

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 85/116 (73%), Positives = 103/116 (88%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA++QK G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD
Sbjct: 1   IAEAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVD 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           +I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+
Sbjct: 61  VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQI 116


>gi|124483947|emb|CAM32791.1| RecA protein [Aeromonas sp. F567A]
          Length = 116

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 84/116 (72%), Positives = 102/116 (87%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           I ++QK G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD
Sbjct: 1   IXEAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVD 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           +I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+
Sbjct: 61  VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQI 116


>gi|124483989|emb|CAM32812.1| RecA protein [Aeromonas schubertii]
 gi|124483991|emb|CAM32813.1| RecA protein [Aeromonas simiae]
          Length = 116

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 85/116 (73%), Positives = 104/116 (89%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA++QK G TCAFVDAEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSGAVD
Sbjct: 1   IAEAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLVSQPDTGEQALEICDMLVRSGAVD 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           +I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+
Sbjct: 61  VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQI 116


>gi|300603352|emb|CBN08581.1| recombinase A [Marichromatium sp. JA548]
          Length = 119

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 93/119 (78%), Positives = 110/119 (92%)

Query: 96  GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
           GT AFVDAEHALD +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVA
Sbjct: 1   GTAAFVDAEHALDPVYAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVA 60

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           ALTP+AEIEG+MG+S  G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMFGSP
Sbjct: 61  ALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSP 119


>gi|124483937|emb|CAM32786.1| RecA protein [Aeromonas sp. F713E]
          Length = 116

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 85/116 (73%), Positives = 102/116 (87%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA++QK G TCAFVDAEHALD IYA KLGV++  LLISQPDTGEQALEI DMLVRS AVD
Sbjct: 1   IAEAQKKGKTCAFVDAEHALDPIYAAKLGVNVDELLISQPDTGEQALEICDMLVRSNAVD 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           +I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+
Sbjct: 61  VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQI 116


>gi|124483993|emb|CAM32814.1| RecA protein [Aeromonas sp. LMG 17321]
          Length = 116

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 84/116 (72%), Positives = 104/116 (89%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA++QK G TCAFVDAEHALD +YA KLGV++ +LL+SQPDTGEQALEI DMLVRSGAVD
Sbjct: 1   IAEAQKMGKTCAFVDAEHALDPVYAAKLGVNVDDLLVSQPDTGEQALEICDMLVRSGAVD 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           +I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+
Sbjct: 61  VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQI 116


>gi|124483925|emb|CAM32780.1| RecA protein [Aeromonas eucrenophila]
 gi|124483927|emb|CAM32781.1| RecA protein [Aeromonas sp. F729F]
          Length = 116

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 84/116 (72%), Positives = 101/116 (87%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           I ++QK G TCAFVDAEHALD IYA KLGV++  LLISQPDTGEQALEI DMLVRS AVD
Sbjct: 1   IXEAQKKGKTCAFVDAEHALDPIYAAKLGVNVDELLISQPDTGEQALEICDMLVRSNAVD 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           +I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+
Sbjct: 61  VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQI 116


>gi|124483901|emb|CAM32768.1| RecA protein [Aeromonas sp. F530D]
          Length = 116

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 82/116 (70%), Positives = 100/116 (86%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA++Q  G  CAF+DAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD
Sbjct: 1   IAEAQNKGKVCAFIDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVD 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           +I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT +I  + C+ +FINQ+
Sbjct: 61  VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTXNIKNANCLCIFINQI 116


>gi|124483881|emb|CAM32758.1| RecA protein [Aeromonas salmonicida subsp. salmonicida]
 gi|124483883|emb|CAM32759.1| RecA protein [Aeromonas sp. V32]
 gi|124483885|emb|CAM32760.1| RecA protein [Aeromonas sp. V155]
 gi|124483887|emb|CAM32761.1| RecA protein [Aeromonas sp. V130]
 gi|124483889|emb|CAM32762.1| RecA protein [Aeromonas sp. F553E]
 gi|124483891|emb|CAM32763.1| RecA protein [Aeromonas sp. V1]
 gi|124483893|emb|CAM32764.1| RecA protein [Aeromonas sp. V23]
 gi|124483895|emb|CAM32765.1| RecA protein [Aeromonas sp. V183]
 gi|124483897|emb|CAM32766.1| RecA protein [Aeromonas sp. F666I]
 gi|124483899|emb|CAM32767.1| RecA protein [Aeromonas bestiarum]
 gi|124483903|emb|CAM32769.1| RecA protein [Aeromonas popoffii]
 gi|124483905|emb|CAM32770.1| RecA protein [Aeromonas sp. F533E]
 gi|124483909|emb|CAM32772.1| RecA protein [Aeromonas sp. F548B]
 gi|124483911|emb|CAM32773.1| RecA protein [Aeromonas sp. F600C]
 gi|124483913|emb|CAM32774.1| RecA protein [Aeromonas sobria]
 gi|124483915|emb|CAM32775.1| RecA protein [Aeromonas encheleia]
 gi|124483917|emb|CAM32776.1| RecA protein [Aeromonas encheleia]
          Length = 116

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 83/116 (71%), Positives = 102/116 (87%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA++QK G  CAF+DAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD
Sbjct: 1   IAEAQKKGKVCAFIDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVD 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           +I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+
Sbjct: 61  VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQI 116


>gi|297374124|emb|CBL88078.1| recombinase A [Marichromatium sp. JA349]
          Length = 118

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 92/118 (77%), Positives = 109/118 (92%)

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
           T AFVDAEHALD +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAA
Sbjct: 1   TAAFVDAEHALDPVYAEKLGVRVEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAA 60

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           LTP+AEIEG+MG+S  G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMFGSP
Sbjct: 61  LTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSP 118


>gi|124483919|emb|CAM32777.1| RecA protein [Aeromonas sp. F544A]
          Length = 116

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 83/116 (71%), Positives = 101/116 (87%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA++QK G  CAF+DAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD
Sbjct: 1   IAEAQKKGKVCAFIDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVD 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           +I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C  +FINQ+
Sbjct: 61  VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCXCIFINQI 116


>gi|294471056|gb|ADE80789.1| recombinase A [Lactococcus raffinolactis]
          Length = 125

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 80/125 (64%), Positives = 104/125 (83%)

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AF+DAEHALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGA+D++VIDSVAAL 
Sbjct: 1   AFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAIDLVVIDSVAALV 60

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           PRAEI+G++G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFGSPETT 
Sbjct: 61  PRAEIDGEIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGSPETTP 120

Query: 219 GGNAL 223
           GG   
Sbjct: 121 GGGRA 125


>gi|258677610|gb|ACV87529.1| RecA [uncultured Burkholderia sp.]
          Length = 100

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 74/100 (74%), Positives = 87/100 (87%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           GLDIALG+GG P+GR+VEIYGPESSGKTTL L  +A+ QK GGT AF+DAEHALD  YA 
Sbjct: 1   GLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAG 60

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
           KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDS
Sbjct: 61  KLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMIVIDS 100


>gi|258677614|gb|ACV87531.1| RecA [uncultured Burkholderia sp.]
          Length = 100

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 74/100 (74%), Positives = 87/100 (87%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           GLDIALG+GG P+GR+VEIYGPESSGKTTL L   A+ QK GGT AF+DAEHALD  YA+
Sbjct: 1   GLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVGAEMQKLGGTAAFIDAEHALDIQYAQ 60

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
           KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDS
Sbjct: 61  KLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMIVIDS 100


>gi|255025015|ref|ZP_05297001.1| recombinase A [Listeria monocytogenes FSL J1-208]
          Length = 129

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 72/114 (63%), Positives = 93/114 (81%)

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           + LVRSGAVD++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+  I++SK I 
Sbjct: 1   EALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIA 60

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR   +K    + GN+ +
Sbjct: 61  IFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKNK 114


>gi|33622425|gb|AAQ23477.1| RecA protein [Acinetobacter baumannii]
 gi|33622429|gb|AAQ23479.1| RecA protein [Acinetobacter baumannii]
 gi|33622431|gb|AAQ23480.1| RecA protein [Acinetobacter baumannii]
 gi|33622433|gb|AAQ23481.1| RecA protein [Acinetobacter baumannii]
 gi|33622435|gb|AAQ23482.1| RecA protein [Acinetobacter baumannii]
 gi|33622437|gb|AAQ23483.1| RecA protein [Acinetobacter baumannii]
 gi|33622439|gb|AAQ23484.1| RecA protein [Acinetobacter baumannii]
          Length = 111

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 83/111 (74%), Positives = 99/111 (89%)

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK+GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLVRSGA+D+IV
Sbjct: 1   CQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIV 60

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           +DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN
Sbjct: 61  VDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 111


>gi|297374120|emb|CBL88076.1| recombinase A [Marichromatium sp. JA550]
 gi|297374122|emb|CBL88077.1| recombinase A [Marichromatium sp. JA553]
 gi|300603350|emb|CBN08580.1| recombinase A [Marichromatium sp. JA552]
 gi|300603364|emb|CBN08587.1| recombinase A [Marichromatium sp. JA540]
 gi|300603425|emb|CBN73206.1| recombinase A [Marichromatium sp. JA537]
          Length = 118

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 92/118 (77%), Positives = 109/118 (92%)

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
           T AFVDAEHALD +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAA
Sbjct: 1   TAAFVDAEHALDPVYAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAA 60

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           LTP+AEIEG+MG+S  G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMFGSP
Sbjct: 61  LTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSP 118


>gi|264665857|gb|ACY70992.1| recombinase A [Clostridium ultunense]
          Length = 120

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 84/120 (70%), Positives = 106/120 (88%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F++AEHALD  YA+KLGVD++NL++SQPDTGEQ LEIT+ LVRSGAVDI+V+DSVAAL P
Sbjct: 1   FIEAEHALDPNYAKKLGVDVENLIVSQPDTGEQGLEITEALVRSGAVDIVVVDSVAALVP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           +AEIEG+MG+S  G+QARLMSQALRKL  +I++S   ++FINQ+R K+GVMFG+PETT G
Sbjct: 61  KAEIEGEMGDSHVGLQARLMSQALRKLAGAINKSNTTVIFINQLREKVGVMFGNPETTPG 120


>gi|254002714|dbj|BAH85307.1| recombination protein [Sphingomonas sp. SS04-1]
          Length = 114

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 85/113 (75%), Positives = 98/113 (86%)

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTLALH IA++QK GG  AFVDAEHALD  YA+KLGVD+  L++SQPDTGEQALEI D 
Sbjct: 2   KTTLALHAIAEAQKAGGIAAFVDAEHALDPGYAKKLGVDIDELIVSQPDTGEQALEIVDT 61

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           LVRS A+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT SISR
Sbjct: 62  LVRSNAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGSISR 114


>gi|33622427|gb|AAQ23478.1| RecA protein [Acinetobacter baumannii]
          Length = 111

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 82/111 (73%), Positives = 99/111 (89%)

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            QK+GGTCAF+DAEHALD  YARKLGVD+ NLL+SQPD GEQALEI DMLVRSGA+D+I+
Sbjct: 1   CQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLII 60

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           +DSVAALTP+AEIEG+MG+S  G+QARLMSQALRK+T +  RS C+++FIN
Sbjct: 61  VDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 111


>gi|294471054|gb|ADE80788.1| recombinase A [Lactococcus plantarum]
          Length = 126

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 80/126 (63%), Positives = 103/126 (81%)

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            AF+DA HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGA+D++VIDSVAAL
Sbjct: 1   AAFIDAXHALDPAYAASLGVNIDELLLSQPDSGEQGLEIAGKLIDSGAIDLVVIDSVAAL 60

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
            PRAEI+GD+G+S  G+QAR+MSQA+RKL+SSI+++K I +FINQ+R K+GVMFG+PETT
Sbjct: 61  VPRAEIDGDIGDSHVGLQARMMSQAMRKLSSSINKTKTIAIFINQLREKVGVMFGNPETT 120

Query: 218 TGGNAL 223
            GG   
Sbjct: 121 PGGGRA 126


>gi|254002712|dbj|BAH85306.1| recombination protein [Sphingomonas sp. SS86]
          Length = 113

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 85/113 (75%), Positives = 98/113 (86%)

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTLALH IA++QK GG  AFVDAEHALD  YA+KLGVD+  L++SQPDTGEQALEI D 
Sbjct: 1   KTTLALHAIAEAQKAGGIAAFVDAEHALDPGYAKKLGVDIDELIVSQPDTGEQALEIVDT 60

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           LVRS A+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT SISR
Sbjct: 61  LVRSNAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGSISR 113


>gi|300603362|emb|CBN08586.1| recombinase A [Marichromatium sp. JA509]
          Length = 118

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 91/117 (77%), Positives = 108/117 (92%)

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            AFVDAEHALD +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAAL
Sbjct: 2   AAFVDAEHALDPVYAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAAL 61

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           TP+AEIEG+MG+S  G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMFGSP
Sbjct: 62  TPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSP 118


>gi|24636780|dbj|BAB63856.2| P0660F12.22 [Oryza sativa Japonica Group]
 gi|57899370|dbj|BAD88017.1| putative RecA protein [Oryza sativa Japonica Group]
          Length = 239

 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 72/235 (30%), Positives = 116/235 (49%), Gaps = 44/235 (18%)

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128
           +VE++G E+SGKTTLALH + ++QK GG CA++DAE+A +   A  +GV+++ LLI+QPD
Sbjct: 1   MVELFGKEASGKTTLALHVVKEAQKKGGCCAYIDAENAFNPSVAEAIGVNVEKLLIAQPD 60

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           + E +L I + LV                       G   + +             KL+S
Sbjct: 61  SAENSLSIVNTLV-----------------------GGSIDVVVVDSVCFFRNVRTKLSS 97

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
           +    +   +F               E   GGNAL FY++VR+   R     ++   TG 
Sbjct: 98  N----QTPGIF--------------KEVACGGNALGFYAAVRMRTSRRELRYNEAQATGI 139

Query: 249 QTRVKVVKNKMAS-PFKQVEFDIMYGEGISFFGELIDLGVKASIVDK--SGAWFS 300
              V+++KNK+A    K+   DI +G+GI +  E+++L     ++ K  SG W +
Sbjct: 140 GISVQIIKNKLAPATLKEAGIDIRFGKGICYESEILELASSLGVIMKDDSGYWIN 194


>gi|124483907|emb|CAM32771.1| RecA protein [Aeromonas sp. F674P]
          Length = 116

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 83/116 (71%), Positives = 102/116 (87%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA++QK G  CAF+DAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD
Sbjct: 1   IAEAQKKGKVCAFIDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVD 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           +I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+
Sbjct: 61  VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLXIFINQI 116


>gi|328466733|gb|EGF37858.1| recombinase A [Lactobacillus rhamnosus MTCC 5462]
          Length = 74

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/76 (55%), Positives = 56/76 (73%), Gaps = 2/76 (2%)

Query: 7  MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
          M   ++ +AL  AL +I++ +GKGAIM++G +      +  VSSGSL +D ALG+GG P+
Sbjct: 1  MAETERQEALATALKKIEKNFGKGAIMRMGDKVETR--VSAVSSGSLAIDDALGVGGLPR 58

Query: 67 GRIVEIYGPESSGKTT 82
          GRIVEIYGPESSGKTT
Sbjct: 59 GRIVEIYGPESSGKTT 74


>gi|264665859|gb|ACY70993.1| recombinase A [Sporanaerobacter acetigenes]
          Length = 120

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 86/120 (71%), Positives = 107/120 (89%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F++AEHALD  YA++LGVD+ NL++SQPDTGEQALEI + LVRSGA+D+IVIDSVAAL P
Sbjct: 1   FIEAEHALDPSYAKRLGVDIDNLIVSQPDTGEQALEIAEALVRSGAIDVIVIDSVAALVP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           +AEIEG+MGES  G+QARLMSQALRKL  SI++S+ I++FINQ+R K+GVMFG+PETT G
Sbjct: 61  KAEIEGEMGESHVGLQARLMSQALRKLAGSINKSQAIVIFINQLREKVGVMFGNPETTPG 120


>gi|296242500|ref|YP_003649987.1| DNA repair and recombination protein RadA [Thermosphaera aggregans
           DSM 11486]
 gi|296095084|gb|ADG91035.1| DNA repair and recombination protein RadA [Thermosphaera aggregans
           DSM 11486]
          Length = 326

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 87/242 (35%), Gaps = 31/242 (12%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGT 97
            I+ +++GS  LD  LG GG     I E YG   SGKT +        Q         G 
Sbjct: 87  NIKKITTGSKSLDDLLG-GGIETKTITEFYGEYGSGKTQICHQLSVNVQLPPERGGLSGK 145

Query: 98  CAFVDAEHALDSIYARKLGVDL--------KNLLISQPDTGEQALEITD---MLVRSGAV 146
             +VD E          +   L         N+   +    +  + I D     V    V
Sbjct: 146 AVYVDTEGTFRWERIEAMARGLGLEPDQVMDNIFYMRAYNSDHQVSIIDDLFTFVPKNDV 205

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++V+DSV +   RAE  G         + + ++  L +L          +V  NQ+  +
Sbjct: 206 RLVVVDSVTSHF-RAEFPGR---EHLAERQQKLNAHLHQLMRLAEAFNIAVVVTNQVMAR 261

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
             V +G P T  GG+ L     VR+ +RR           GN+   +VV        + V
Sbjct: 262 PDVFYGDPTTAVGGHVLAHTPGVRVQLRRSK---------GNKRIARVVDAPHLPEGEAV 312

Query: 267 EF 268
             
Sbjct: 313 FV 314


>gi|124483923|emb|CAM32779.1| RecA protein [Aeromonas sp. V6]
          Length = 116

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 84/116 (72%), Positives = 102/116 (87%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA++QK G TCAFV AEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD
Sbjct: 1   IAEAQKKGKTCAFVRAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVD 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           +I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  + C+ +FINQ+
Sbjct: 61  VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQI 116


>gi|264665841|gb|ACY70984.1| recombinase A [Tissierella sp. AIP 285.00]
          Length = 120

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 85/120 (70%), Positives = 105/120 (87%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F++AEHALD  YA+KLGVD++NL++SQPDTGEQALEI + LVRSGAVD+IVIDSVAAL P
Sbjct: 1   FIEAEHALDPGYAKKLGVDVENLIVSQPDTGEQALEIAEALVRSGAVDVIVIDSVAALVP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           +AEIEG+MG+S  G+QARLMSQALRKL  +I++S    +FINQ+R K+GVMFG+PETT G
Sbjct: 61  KAEIEGEMGDSHVGLQARLMSQALRKLAGAINKSNTTTIFINQLREKVGVMFGNPETTPG 120


>gi|291246140|gb|ADD85194.1| RecA [Borrelia recurrentis]
          Length = 128

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 79/127 (62%), Positives = 107/127 (84%)

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L  IA+ QKTGG  AF+DAEHALD +YAR LGV++  L +SQPD+GEQAL+I + L+RSG
Sbjct: 1   LQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQPDSGEQALDIAEYLIRSG 60

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            VD+IV+DSVAAL P+AEI+G+MG++  G+QARLMS+ALRK+T+ +S+S   ++FINQ+R
Sbjct: 61  GVDLIVVDSVAALMPQAEIDGEMGDTQIGLQARLMSKALRKITAILSKSNACIMFINQIR 120

Query: 205 MKIGVMF 211
           MKIG++F
Sbjct: 121 MKIGLVF 127


>gi|126460684|ref|YP_001056962.1| DNA repair and recombination protein RadA [Pyrobaculum calidifontis
           JCM 11548]
 gi|166218766|sp|A3MXX9|RADA_PYRCJ RecName: Full=DNA repair and recombination protein radA
 gi|126250405|gb|ABO09496.1| DNA repair and recombination protein RadA [Pyrobaculum calidifontis
           JCM 11548]
          Length = 332

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 92/245 (37%), Gaps = 28/245 (11%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
              + I  +S+G   LD  LG GG     + E+ G   SGKT L        Q       
Sbjct: 93  ERRKKIRRISTGVRALDELLG-GGIETRAVTEVVGEFGSGKTQLCHQLAVMVQLPEDRGG 151

Query: 94  TGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQAL---EITDMLVR 142
            G    ++D E+        ++           L N+  ++  + +  +   E    L+R
Sbjct: 152 LGAKAIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSADHQMVLVEQAKSLIR 211

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
              V ++V+DSV A   RAE  G         + + +++ +  L          +V  NQ
Sbjct: 212 QHNVALLVVDSVIAHF-RAEFPGREN---LAERQQKLNKHIADLLRLADAYDVAVVVTNQ 267

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVK 256
           +  +  V FG+P    GGN L   ++ RL +R      R+  I D       +   ++ +
Sbjct: 268 VMAQPDVFFGNPLRPAGGNILAHGATYRLWLRKSKENIRIAKIFDSPYHPEGEVSFRITE 327

Query: 257 NKMAS 261
             +  
Sbjct: 328 EGLVD 332


>gi|264665849|gb|ACY70988.1| recombinase A [Tissierella sp. LBN 299]
          Length = 120

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 86/120 (71%), Positives = 107/120 (89%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F++AEHALD  YA+KLGVD +NL++SQPDTGEQALEI + LVRSGAVDI+V+DSVAAL P
Sbjct: 1   FIEAEHALDPTYAKKLGVDTENLIVSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           +AEIEG+MG+S  G+QARLMSQALRKL+ SIS+S+ I +FINQ+R K+G+MFG+PETT G
Sbjct: 61  KAEIEGEMGDSHVGLQARLMSQALRKLSGSISKSQTIAIFINQLREKVGIMFGNPETTPG 120


>gi|320101396|ref|YP_004176988.1| DNA repair and recombination protein RadA [Desulfurococcus mucosus
           DSM 2162]
 gi|319753748|gb|ADV65506.1| DNA repair and recombination protein RadA [Desulfurococcus mucosus
           DSM 2162]
          Length = 329

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 61/273 (22%), Positives = 98/273 (35%), Gaps = 36/273 (13%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K +EAA   +   + K A             I  +++GS  LD  LG GG     I E 
Sbjct: 64  QKVIEAARKALGITF-KTA----REVKQERLNIRKITTGSRSLDELLG-GGVETKTITEF 117

Query: 73  YGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALD----SIYARKLGVD---- 118
           YG   SGKT L        Q         G   ++D E           AR LG+D    
Sbjct: 118 YGEYGSGKTQLCHQLSVNVQLPLEKGGLEGRAVYIDTEGTFRWERIEAMARALGLDPDKV 177

Query: 119 LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           + N+   +    +  + I       +    V ++V+DSV +   RAE  G         +
Sbjct: 178 MDNIYYMRAYNSDHQISIVDELFTFIPKNNVKLVVVDSVTSHF-RAEYPGRD---HLAER 233

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
            + ++  L +L          +V  NQ+  +  + +G P    GG+ L     VR+ +++
Sbjct: 234 QQKLNSHLHQLVRLAEAYNVAVVVTNQVMARPDIFYGDPTIAVGGHVLAHTPGVRVQLKK 293

Query: 236 VGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
                      GN+   +VV        + V  
Sbjct: 294 SK---------GNKRIARVVDAPHLPEGEAVFV 317


>gi|312861991|gb|ADR10475.1| recombinase A [Soehngenia saccharolytica]
          Length = 120

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 85/120 (70%), Positives = 105/120 (87%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F++AEHALD  YA+KLGVD+ NL+ISQPDTGEQALEIT+ LVRSGA+D++VIDSVAAL P
Sbjct: 1   FIEAEHALDPNYAKKLGVDIDNLIISQPDTGEQALEITEALVRSGAIDVVVIDSVAALVP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           +AEIEG+MG+S  G+QARLMSQALRKL  +I++S    +FINQ+R K+GVMFG+PETT G
Sbjct: 61  KAEIEGEMGDSHIGLQARLMSQALRKLAGAINKSNATCIFINQLREKVGVMFGNPETTPG 120


>gi|326781906|ref|YP_004322308.1| UvsX RecA-like protein [Synechococcus phage S-SM2]
 gi|310003096|gb|ADO97494.1| UvsX RecA-like protein [Synechococcus phage S-SM2]
          Length = 334

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 66/337 (19%), Positives = 130/337 (38%), Gaps = 31/337 (9%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPE 76
           L +I +  G     +L       E  + V +GS   +  +     GG    +I  I G  
Sbjct: 4   LKEIVKEIGDD-YTKLARDIDDTE--QFVDTGSYIFNGLVSGSIFGGVSGNKITAIAGES 60

Query: 77  SSGKTTLALHTIAQS--QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
           S+GKT  +L  +         G C + D E A++       G+DL+ L++    T E+  
Sbjct: 61  STGKTFFSLAVVKNFLDANPDGYCLYFDTEAAVNKTLIASRGIDLERLVVVNVVTIEEFR 120

Query: 135 E--------ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP--GMQARLMSQALR 184
                         V      + V+DS+  L+   EI   + +       +++L+  A R
Sbjct: 121 SKALKAVDIYLKKPVDERKPCMFVLDSLGMLSTEKEITDALNDKQVRDMTKSQLVKGAFR 180

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
            LT  + ++   ++  N     IG    + E   G       SS+    ++    KD  +
Sbjct: 181 MLTLKLGQANIPMIVTNHTYDVIGAYVPTKEMGGGSGLKYAASSIIYLSKKKE--KDGTT 238

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGE-GISFFGELIDLGVKASIVDKSGAWFSFKG 303
           + GN  + K  K++++   K V   + Y E G+  +  L++LG    +       +   G
Sbjct: 239 VIGNLIKAKTHKSRLSKENKDVTVRLYYDERGLDRYYGLLELGELGGLWKNVAGRYEIDG 298

Query: 304 QRLGQGRENSKIFLRE-----NIEIAENIESLLRQNA 335
           +++      +K   ++       E+ E ++ + ++  
Sbjct: 299 KKVY-----AKAIYKDPEQYFTPEVMEKLDEIAKEEF 330


>gi|145592504|ref|YP_001154506.1| DNA repair and recombination protein RadA [Pyrobaculum arsenaticum
           DSM 13514]
 gi|166218765|sp|A4WN87|RADA_PYRAR RecName: Full=DNA repair and recombination protein radA
 gi|145284272|gb|ABP51854.1| DNA repair and recombination protein RadA [Pyrobaculum arsenaticum
           DSM 13514]
          Length = 333

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 60/274 (21%), Positives = 104/274 (37%), Gaps = 35/274 (12%)

Query: 17  EAALSQIQ---RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           E AL  I+   ++ G  + +         + I  +S+G   LD  LG GG     + E+ 
Sbjct: 68  ERALQIIESARKMLGLHSFISALEVYERRKKIRRISTGVRSLDELLG-GGIETRAVTEVV 126

Query: 74  GPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKLGVD--------L 119
           G   SGKT L        Q        G    ++D E+        ++           L
Sbjct: 127 GEFGSGKTQLCHQLAVMVQLPEERGGLGAKAIYIDTENTFRPERIMQMARARGLDPDQAL 186

Query: 120 KNLLISQPDTGEQAL---EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N+  ++  + +  +   E    +V+   V +IV+DSV A   R+E  G         + 
Sbjct: 187 NNIFYARAYSSDHQMILVEHAKSIVKQHNVALIVVDSVIAHF-RSEFPGREN---LAERQ 242

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           + +++ +  L          +V  NQ+  +  V FG+P    GGN L   ++ RL +R+ 
Sbjct: 243 QKLNKHVADLLRLADAYDVAVVITNQVMAQPDVFFGNPLRPAGGNILAHGATYRLWLRKS 302

Query: 237 GSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
              K+   I         + +    P  +V F I
Sbjct: 303 ---KENIRIV-------KIFDSPYHPEGEVSFRI 326


>gi|294471044|gb|ADE80783.1| recombinase A [Lactococcus garvieae]
          Length = 126

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 77/126 (61%), Positives = 102/126 (80%)

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            AF+DA HALD +YA  +GVD+  LL+SQPD GEQ L+I + L+ SGAVD++V+DSVAAL
Sbjct: 1   AAFIDAAHALDPVYAAAIGVDIDQLLLSQPDYGEQGLQIAEKLIESGAVDLVVVDSVAAL 60

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
           TPRAEI+G++G+S  G+QAR+MSQA+RKL + I+++K   +FINQ+R K+GVMFGSPETT
Sbjct: 61  TPRAEIDGEIGDSTVGLQARMMSQAMRKLAAGINKTKTTAIFINQLREKVGVMFGSPETT 120

Query: 218 TGGNAL 223
            GG   
Sbjct: 121 PGGGRA 126


>gi|300603360|emb|CBN08585.1| recombinase A [Marichromatium sp. JA546]
          Length = 116

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 91/116 (78%), Positives = 108/116 (93%)

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AFVDAEHALD +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAALT
Sbjct: 1   AFVDAEHALDPVYAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAALT 60

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           P+AEIEG+MG+S  G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMFGSP
Sbjct: 61  PKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSP 116


>gi|218884526|ref|YP_002428908.1| DNA repair and recombination protein RadA [Desulfurococcus
           kamchatkensis 1221n]
 gi|254764424|sp|B8D610|RADA_DESK1 RecName: Full=DNA repair and recombination protein radA
 gi|218766142|gb|ACL11541.1| DNA repair and recombination protein radA [Desulfurococcus
           kamchatkensis 1221n]
          Length = 328

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 91/242 (37%), Gaps = 31/242 (12%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            I  +++GS  LD  LG GG     I E +G   SGKT +        Q T       G 
Sbjct: 89  NIGKITTGSKSLDELLG-GGVETKTITEFFGEYGSGKTQICHQLSVNVQLTPEKGGLNGR 147

Query: 98  CAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEI---TDMLVRSGAV 146
             ++D E           AR LG+D    + N+   +    +  + I       V    V
Sbjct: 148 AVYIDTEGTFRWERIEAMARALGLDPDKVMDNIYYMRAYNSDHQIAIVDELFTFVPKNDV 207

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++++DSV +   RAE  G         + + ++  L +L          +V  NQ+  +
Sbjct: 208 RLVILDSVTSHF-RAEYPGR---EHLAERQQKLNSHLHQLMRLAEAYNVAVVVTNQVMAR 263

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
             V +G P T  GG+ L     VR+ +R+           GN+   +VV        + V
Sbjct: 264 PDVFYGDPTTAVGGHVLAHTPGVRIQLRKSK---------GNKRIARVVDAPHLPEGEVV 314

Query: 267 EF 268
             
Sbjct: 315 FV 316


>gi|289803584|ref|ZP_06534213.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 93

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 61/91 (67%)

Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
             I+YGEGI+F+GEL+DLGVK  +++K+GAW+S+ G+++GQG+ N+  +L+EN   A+ I
Sbjct: 1   VQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATTWLKENPATAKEI 60

Query: 328 ESLLRQNAGLVADSLLQEPAINTKDDADKDD 358
           E  +R+      ++       +++  A+ ++
Sbjct: 61  EKRVRELLLSNQNATPDFAVDDSEGVAETNE 91


>gi|13878702|sp|Q9Y8J4|RADA_DESAM RecName: Full=DNA repair and recombination protein radA
 gi|4929344|gb|AAD33955.1|AF145465_1 recombination/repair protein RadA [Desulfurococcus amylolyticus]
          Length = 328

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 91/244 (37%), Gaps = 31/244 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              I  +++GS  LD  LG GG     I E +G   SGKT +        Q T       
Sbjct: 87  RSNIGKITTGSKSLDELLG-GGVETKTITEFFGEYGSGKTQICHQLSVNVQLTPEKGGLN 145

Query: 96  GTCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEI---TDMLVRSG 144
           G   ++D E           AR LG+D    + N+   +    +  + I       V   
Sbjct: 146 GRAVYIDTEGTFRWERIEAMARALGLDPDKVMDNIYYMRAYNSDHQIAIVDELFTFVPKN 205

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            V ++++DSV +   RAE  G         + + ++  L +L          +V  NQ+ 
Sbjct: 206 DVRLVILDSVTSHF-RAEYPGR---EHLAERQQKLNSHLHQLMRLAEAYNVAVVVTNQVM 261

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
            +  V +G P T  GG+ L     VR+ +R+           GN+   +VV        +
Sbjct: 262 ARPDVFYGDPTTAVGGHVLAHTPGVRIQLRKSK---------GNKRIARVVDAPHLPEGE 312

Query: 265 QVEF 268
            V  
Sbjct: 313 VVFV 316


>gi|254173225|ref|ZP_04879898.1| DNA repair and recombination protein RadA [Thermococcus sp. AM4]
 gi|214032634|gb|EEB73463.1| DNA repair and recombination protein RadA [Thermococcus sp. AM4]
          Length = 352

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 100/260 (38%), Gaps = 33/260 (12%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G  M+        + I  +S+GS  LD  LG GG     I E++G   SGKT LA     
Sbjct: 98  GTFMRADEYMEKRKTIGKISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLAHTLAV 156

Query: 90  QSQKT------GGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQAL- 134
             QK       GG+  ++D E+       R++           LKN+ +++       + 
Sbjct: 157 MVQKPPEEGGLGGSVIWIDTENTFRPERIRQIAEARGLDPDETLKNIYVARAFNSNHQML 216

Query: 135 -------EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
                   I +       V ++V+DS+ A   R+E  G         + + +++ L  L 
Sbjct: 217 LVEKAEEIIKEKATTDRPVKLLVVDSLMAHF-RSEYVGR---GSLAERQQKLAKHLADLH 272

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK------D 241
                    +   NQ++ K    FG P    GG+ L   +++R+ +R+  + K      D
Sbjct: 273 RLADLYDIAVFVTNQVQAKPDAFFGDPTRPVGGHILAHSATLRIYLRKGKAGKRVARLID 332

Query: 242 KDSITGNQTRVKVVKNKMAS 261
              +   +   ++ +  +  
Sbjct: 333 SPHLPEGEAVFRITERGVED 352


>gi|34419243|ref|NP_899256.1| UvsX [Vibrio phage KVP40]
 gi|34332924|gb|AAQ64079.1| UvsX [Vibrio phage KVP40]
          Length = 366

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 59/323 (18%), Positives = 109/323 (33%), Gaps = 30/323 (9%)

Query: 20  LSQIQRVYGKGA---IMQLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIY 73
           +S + +   K +     Q+ S+       +   +    ++IA      GG   G +  + 
Sbjct: 1   MSDLMKSLKKSSTSGYAQVLSESQFMFDKDHTRTYVPAINIAFSGEVDGGLTSG-LTVLA 59

Query: 74  GPESSGKTTLALH--TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           GP    K+ L L        +     C F+D E  +   Y R  GVD   +L  Q ++ E
Sbjct: 60  GPSKHFKSNLGLVGVAAYLKKYPDAVCVFIDTEFGITPSYLRSQGVDPDRVLHIQCESVE 119

Query: 132 QA-------------LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP--GMQA 176
           +               +            I  IDSV  +    EI+    E       +A
Sbjct: 120 RMKFEMANQLKDLAERKRAKKAGEEPDRVIFFIDSVGNVASAKEIDDAQNEKSVADMSRA 179

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           + +    R +T   +      + IN    +   ++     + G   +    +V +     
Sbjct: 180 KQLKSLFRIITPYFTMLDIPCIAINHTY-QTQEIYSKTVMSGGTGIMYSADTVII--LGK 236

Query: 237 GSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK-S 295
              KD   I G    + + K++      +V   + Y  GI  F  L+D+ ++   V K S
Sbjct: 237 QQEKDGKDIIGYHFIMNIEKSRFVKEKMKVPLTVTYENGIDPFSGLLDIALQTGHVVKPS 296

Query: 296 GAWFSFK--GQRLGQGRENSKIF 316
             W+      +  G+     K +
Sbjct: 297 NGWYQRATVDEETGEMIVEEKKY 319


>gi|294471050|gb|ADE80786.1| recombinase A [Lactococcus lactis subsp. lactis]
          Length = 123

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 76/123 (61%), Positives = 101/123 (82%)

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            AF+DAE+ALD  YA+ LGV++  LL+SQPD GEQ L+I + L+ SGAVD++VIDSVAAL
Sbjct: 1   AAFIDAENALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAAL 60

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
            P+AEI+G++G+S  G+QAR+MSQA+RKL   I+++K   +FINQ+R K+GVMFGSPETT
Sbjct: 61  VPKAEIDGEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETT 120

Query: 218 TGG 220
            GG
Sbjct: 121 PGG 123


>gi|226088433|dbj|BAH36969.1| recombinase A [Lactobacillus sunkii]
          Length = 118

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 78/115 (67%), Positives = 99/115 (86%)

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT A++DAE+ALD +YA  LGV++ +LL+SQPDTGEQ L+ITD LV SGA+DI+VI
Sbjct: 4   QKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLQITDALVTSGAIDIVVI 63

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ +IS++K I +FINQ+R K
Sbjct: 64  DSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREK 118


>gi|326784133|ref|YP_004324526.1| UvsX RecA-like protein [Prochlorococcus phage Syn1]
 gi|310004865|gb|ADO99256.1| UvsX RecA-like protein [Prochlorococcus phage Syn1]
          Length = 344

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 59/318 (18%), Positives = 122/318 (38%), Gaps = 29/318 (9%)

Query: 35  LGSQGSIFEGIEV-VSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
             S+G     +E  V +GS   +  +     GG P  +I  + G   +GKT   L  +  
Sbjct: 18  FASEGIAAGDVESFVDTGSYIFNALVSGSIYGGIPSNKITALAGESGTGKTFFCLSVVRN 77

Query: 91  SQKTGGTC--AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ----ALEITDMLVRSG 144
                      + + E A+         +D K ++I   +T E+     + I D  +   
Sbjct: 78  FLDIDPDAGVIYFETESAISKQMIESRSIDSKRMVIMPINTIEEFRTTTVRIIDKYMEQP 137

Query: 145 AVD----IIVIDSVAALTPRAEIEGDMGESLP--GMQARLMSQALRKLTSSISRSKCILV 198
             D    + V+DS+  L    E++    +       +++L+    R LT  + ++   ++
Sbjct: 138 KEDRKPLMFVLDSLGMLATNKEVQDATDDKQVRDMTKSQLIKSCFRILTLKMGKANIPMI 197

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
             N     IG    + E   GG +   YS+  +        KD  ++ GN  + +  K++
Sbjct: 198 VTNHTYDVIGSYVPTKEM--GGGSGLKYSASTIIYLGKKKEKDGTTLIGNIIKCEAKKSR 255

Query: 259 MASPFKQVEFDIMYG-EGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317
           +     +VE  + +   G+  +  L++LG +A +       +   G+++      +K  L
Sbjct: 256 LTREGSKVETRLFFDHRGLEKYFGLLELGERAGLWANRAGRYEIAGKKIY-----AKQIL 310

Query: 318 RE-----NIEIAENIESL 330
                    EI + +++ 
Sbjct: 311 ASPEEYFTPEILDALDAQ 328


>gi|312861993|gb|ADR10476.1| recombinase A [Tepidimicrobium ferriphilum]
          Length = 120

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 86/120 (71%), Positives = 107/120 (89%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F++AEHALD  YA+ LGVD++NL++SQPDTGEQALEI + LVRSGAVDIIVIDSVAAL P
Sbjct: 1   FIEAEHALDPNYAKNLGVDVENLIVSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           +AEIEG+MG+S  G+QARLMSQALRKL  +I++SK I++FINQ+R K+G+MFG+PETT G
Sbjct: 61  KAEIEGEMGDSHVGLQARLMSQALRKLAGAINKSKVIVIFINQLREKVGIMFGNPETTPG 120


>gi|240102188|ref|YP_002958496.1| DNA repair and recombination protein RadA [Thermococcus
           gammatolerans EJ3]
 gi|239909741|gb|ACS32632.1| DNA repair and recombination protein RadA (radA) [Thermococcus
           gammatolerans EJ3]
          Length = 355

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 99/260 (38%), Gaps = 33/260 (12%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G  M+          I  +S+GS  LD  LG GG     I E++G   SGKT LA     
Sbjct: 101 GTFMRADEYMEKRRTIGKISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLAHTLAV 159

Query: 90  QSQKT------GGTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQAL- 134
             QK       GG+  ++D E+       R++           LKN+ +++       + 
Sbjct: 160 MVQKPPEEGGLGGSVIWIDTENTFRPERIRQIAEARGLDPDEVLKNIYVARAFNSNHQML 219

Query: 135 -------EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
                   I +       V ++V+DS+ A   R+E  G         + + +++ L  L 
Sbjct: 220 LVEKAEEIIKEKASTDRPVKLLVVDSLMAHF-RSEYVGR---GSLAERQQKLAKHLADLH 275

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK------D 241
                    +   NQ++ K    FG P    GG+ L   +++R+ +R+  + K      D
Sbjct: 276 RLADLYDIAVFVTNQVQAKPDAFFGDPTRPVGGHILAHSATLRVYLRKGKAGKRVARLID 335

Query: 242 KDSITGNQTRVKVVKNKMAS 261
              +   +   ++ +  +  
Sbjct: 336 SPHLPEGEAVFRITEKGVED 355


>gi|6683006|dbj|BAA88984.1| RadA [Pyrobaculum islandicum]
          Length = 315

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 92/245 (37%), Gaps = 28/245 (11%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
              + I  +S+G   LD  LG GG     + E+ G   SGKT L        Q       
Sbjct: 76  ERRKKIRRISTGVRALDELLG-GGIETRAVTEVAGEFGSGKTQLCHQLAVMVQLAEERGG 134

Query: 94  TGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVR 142
            G    ++D E+        ++           L N+  ++  + +  + +      ++R
Sbjct: 135 LGAKAIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSSDHQMILVDQAKSIIR 194

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
              V ++++DSV A   R+E  G         + + +++ +  L          +V  NQ
Sbjct: 195 QHNVALLIVDSVIAHF-RSEFPGREN---LAERQQKLNKHVADLLRLADAYDVAVVITNQ 250

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVK 256
           +  +  V FG+P    GGN L   ++ RL +R      R+  I D       +   ++ +
Sbjct: 251 VMAQPDVFFGNPLRPAGGNILAHGATYRLWLRKSKENIRIAKIFDSPYHPEGEVSFRITE 310

Query: 257 NKMAS 261
             +  
Sbjct: 311 EGLVD 315


>gi|4322494|gb|AAD16063.1| recombination/repair protein RadA [Cenarchaeum symbiosum]
          Length = 369

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 53/265 (20%), Positives = 97/265 (36%), Gaps = 37/265 (13%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I + +  G+           + I ++++G+  LD  LG GG     I E++G   SGKT 
Sbjct: 40  ITKDFASGS-----EIYKRRQSIGMITTGTDALDALLG-GGIETQAITEVFGEFGSGKTQ 93

Query: 83  LALHTIAQSQKT------GGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPD 128
                   +QK       GG   ++D E          +           L  +++++  
Sbjct: 94  FCHTMCVTTQKPKEEGGLGGGVMYIDTEGTFRPERVVTIAKANNMDPAKLLDGIIVARAY 153

Query: 129 TGEQA---LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
                   LE     ++   + +I+ DS   L  R+E    +G      + + + + +R 
Sbjct: 154 NSSHQVLILEEAGKTIQEENIKLIISDSTTGLF-RSEY---LGRGTLASRQQKLGRYIRL 209

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           L        C ++  NQ+       FG P    GGN +   S+ R+  R+ G  K     
Sbjct: 210 LARIAETYNCAVLATNQVSSSPDSFFGDPTRPVGGNVVGHASTYRIYFRKGGKNK----- 264

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDI 270
                RV  + +    P  +  F++
Sbjct: 265 -----RVAKIIDSPHHPASEAVFEL 284


>gi|264665813|gb|ACY70970.1| recombinase A [Tissierella praeacuta]
 gi|264665815|gb|ACY70971.1| recombinase A [Tissierella praeacuta]
 gi|264665817|gb|ACY70972.1| recombinase A [Tissierella praeacuta]
 gi|264665819|gb|ACY70973.1| recombinase A [Tissierella praeacuta]
 gi|264665823|gb|ACY70975.1| recombinase A [Tissierella praeacuta]
 gi|264665825|gb|ACY70976.1| recombinase A [Tissierella praeacuta]
 gi|264665827|gb|ACY70977.1| recombinase A [Tissierella praeacuta]
 gi|264665829|gb|ACY70978.1| recombinase A [Tissierella praeacuta]
 gi|264665831|gb|ACY70979.1| recombinase A [Tissierella praeacuta]
 gi|264665833|gb|ACY70980.1| recombinase A [Tissierella praeacuta]
 gi|264665835|gb|ACY70981.1| recombinase A [Tissierella praeacuta]
 gi|264665837|gb|ACY70982.1| recombinase A [Tissierella praeacuta]
          Length = 120

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 86/120 (71%), Positives = 106/120 (88%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F++AEHALD  YA++LGVD++NL+ISQPDTGEQALEI + LVRSGAVDI+V+DSVAAL P
Sbjct: 1   FIEAEHALDPSYAKRLGVDIENLIISQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           +AEIEG+MG+S  G+QARLMSQALRKL  +I++S   +VFINQ+R K+GVMFGSPETT G
Sbjct: 61  KAEIEGEMGDSHIGLQARLMSQALRKLAGTINKSNSTVVFINQLREKVGVMFGSPETTPG 120


>gi|119872227|ref|YP_930234.1| DNA repair and recombination protein RadA [Pyrobaculum islandicum
           DSM 4184]
 gi|143811446|sp|Q9UWR5|RADA_PYRIL RecName: Full=DNA repair and recombination protein radA
 gi|119673635|gb|ABL87891.1| DNA repair and recombination protein RadA [Pyrobaculum islandicum
           DSM 4184]
          Length = 330

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 92/245 (37%), Gaps = 28/245 (11%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
              + I  +S+G   LD  LG GG     + E+ G   SGKT L        Q       
Sbjct: 91  ERRKKIRRISTGVRALDELLG-GGIETRAVTEVAGEFGSGKTQLCHQLAVMVQLPEERGG 149

Query: 94  TGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVR 142
            G    ++D E+        ++           L N+  ++  + +  + +      ++R
Sbjct: 150 LGAKAIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSSDHQMILVDQAKSIIR 209

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
              V ++++DSV A   R+E  G         + + +++ +  L          +V  NQ
Sbjct: 210 QHNVALLIVDSVIAHF-RSEFPGREN---LAERQQKLNKHVADLLRLADAYDVAVVITNQ 265

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVK 256
           +  +  V FG+P    GGN L   ++ RL +R      R+  I D       +   ++ +
Sbjct: 266 VMAQPDVFFGNPLRPAGGNILAHGATYRLWLRKSKENIRIAKIFDSPYHPEGEVSFRITE 325

Query: 257 NKMAS 261
             +  
Sbjct: 326 EGLVD 330


>gi|264665821|gb|ACY70974.1| recombinase A [Tissierella praeacuta]
          Length = 120

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 85/120 (70%), Positives = 105/120 (87%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F++AEHALD  YA++LGVD++NL+ISQPDTGEQALEI + LVRSGAVDI+V+DSVAAL P
Sbjct: 1   FIEAEHALDPSYAKRLGVDIENLIISQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           +AEI G+MG+S  G+QARLMSQALRKL  +I++S   +VFINQ+R K+GVMFGSPETT G
Sbjct: 61  KAEIGGEMGDSHIGLQARLMSQALRKLAGTINKSNSTVVFINQLREKVGVMFGSPETTPG 120


>gi|300603356|emb|CBN08583.1| recombinase A [Marichromatium sp. JA321]
          Length = 115

 Score =   99 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 90/115 (78%), Positives = 107/115 (93%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           FVDAEHALD +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAALTP
Sbjct: 1   FVDAEHALDPVYAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAALTP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           +AEIEG+MG+S  G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMFGSP
Sbjct: 61  KAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSP 115


>gi|294471062|gb|ADE80792.1| recombinase A [Lactococcus lactis]
          Length = 126

 Score =   99 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 75/126 (59%), Positives = 100/126 (79%)

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            AF+DA +ALD  YA+ LGV++  LL+SQPD GEQ L+I + L+ SGAVD++VIDSVAAL
Sbjct: 1   AAFIDAANALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAAL 60

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
            P+AEI+G++G+S  G+QAR+MSQA+RKL   I+++K   +FINQ+R K+GVMFGSPETT
Sbjct: 61  VPKAEIDGEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETT 120

Query: 218 TGGNAL 223
            GG   
Sbjct: 121 PGGGRA 126


>gi|118575453|ref|YP_875196.1| RecA/RadA recombinase [Cenarchaeum symbiosum A]
 gi|145559520|sp|O93748|RADA_CENSY RecName: Full=DNA repair and recombination protein radA
 gi|118193974|gb|ABK76892.1| RecA/RadA recombinase [Cenarchaeum symbiosum A]
          Length = 398

 Score =   99 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 53/265 (20%), Positives = 97/265 (36%), Gaps = 37/265 (13%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I + +  G+           + I ++++G+  LD  LG GG     I E++G   SGKT 
Sbjct: 69  ITKDFASGS-----EIYKRRQSIGMITTGTDALDALLG-GGIETQAITEVFGEFGSGKTQ 122

Query: 83  LALHTIAQSQKT------GGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPD 128
                   +QK       GG   ++D E          +           L  +++++  
Sbjct: 123 FCHTMCVTTQKPKEEGGLGGGVMYIDTEGTFRPERVVTIAKANNMDPAKLLDGIIVARAY 182

Query: 129 TGEQA---LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
                   LE     ++   + +I+ DS   L  R+E    +G      + + + + +R 
Sbjct: 183 NSSHQVLILEEAGKTIQEENIKLIISDSTTGLF-RSEY---LGRGTLASRQQKLGRYIRL 238

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
           L        C ++  NQ+       FG P    GGN +   S+ R+  R+ G  K     
Sbjct: 239 LARIAETYNCAVLATNQVSSSPDSFFGDPTRPVGGNVVGHASTYRIYFRKGGKNK----- 293

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDI 270
                RV  + +    P  +  F++
Sbjct: 294 -----RVAKIIDSPHHPASEAVFEL 313


>gi|18181991|dbj|BAB83903.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
          Length = 319

 Score =   99 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 60/284 (21%), Positives = 108/284 (38%), Gaps = 36/284 (12%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           + I+   K ++AA   +   + K A             I+ +++GS  LD  LG GG   
Sbjct: 50  IPILTAQKIVDAAREALNIDF-KTAY----DLKIESMNIKKITTGSRNLDELLG-GGIET 103

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKLGVDL- 119
             I E++G   SGKT +        Q         G   ++D E         ++   + 
Sbjct: 104 KTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKAVYIDTEGTFRWERIEQMARGVG 163

Query: 120 -------KNLLISQPDTGEQALEITDM---LVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
                  KN+   +       + I D    +V++  + ++V+DSV +   RAE  G    
Sbjct: 164 LDPDEVMKNIYWIRAINSHHQIAIVDKLFTMVKNDNIKLVVVDSVTSHF-RAEFPGREN- 221

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
               M+ +L+++ L +L          +V  NQ+  +  V +G P    GG+ L     V
Sbjct: 222 --LAMRQQLLNRHLHQLMRLADIFNVAVVITNQVMARPDVFYGDPTQAVGGHVLGHAPGV 279

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           R+ +++           GN+   +VV        + V     +G
Sbjct: 280 RVYLKKGR---------GNKRIARVVDAPHLPEGETVFAITEWG 314


>gi|18312075|ref|NP_558742.1| DNA repair and recombination protein RadA [Pyrobaculum aerophilum
           str. IM2]
 gi|20139514|sp|Q8ZYR9|RADA_PYRAE RecName: Full=DNA repair and recombination protein radA
 gi|18159503|gb|AAL62924.1| DNA repair protein radA [Pyrobaculum aerophilum str. IM2]
 gi|18478907|gb|AAL73354.1| DNA repair protein RadA [Pyrobaculum aerophilum]
          Length = 333

 Score =   99 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 92/245 (37%), Gaps = 28/245 (11%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
              + I  +S+G   LD  LG GG     + EI G   SGKT L        Q       
Sbjct: 94  ERRKKIRRISTGVRSLDELLG-GGIETRAVTEIVGEFGSGKTQLCHQLAVMVQLPEERGG 152

Query: 94  TGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQAL---EITDMLVR 142
            G    ++D E+        ++           L N+  ++  + +  +   E    +++
Sbjct: 153 LGAKAIYIDTENTFRPERIMQIAKARGLDSDQALHNIFYARAYSSDHQMILVEQAKSIIK 212

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
              V ++V+DSV A   R+E  G         + + +++ +  L          +V  NQ
Sbjct: 213 QHNVALLVVDSVIAHF-RSEFPGREN---LAERQQKLNKHVADLLRLADAYDVAVVITNQ 268

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVK 256
           +  +  V FG+P    GGN L   ++ RL +R      R+  I D       +   ++ +
Sbjct: 269 VMAQPDVFFGNPLRPAGGNILAHGATYRLWLRKSKENIRIAKIFDSPYHPEGEVSFRITE 328

Query: 257 NKMAS 261
             +  
Sbjct: 329 EGLVD 333


>gi|255928992|ref|YP_003097304.1| recA-like recombination protein [Synechococcus phage S-RSM4]
 gi|255705278|emb|CAR63267.1| recA-like recombination protein [Synechococcus phage S-RSM4]
          Length = 338

 Score =   99 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 114/265 (43%), Gaps = 17/265 (6%)

Query: 48  VSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG--GTCAFVD 102
           V +GS   +  +     GG P  ++  + G  S+GKT  AL  +    +    G   + +
Sbjct: 32  VDTGSYIFNALVSGSLFGGLPSNKVTALAGESSTGKTFFALSVVRNFLRDNPTGGVIYFE 91

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDT----GEQALEITDMLVRSGAVD----IIVIDSV 154
           +E A+      + G+D K +++    T      QA  I D  ++    +    + V+DS+
Sbjct: 92  SESAISREMIEERGIDSKRMIMMPVATIEEFRTQACRILDKYMKEPKDERVPMLFVLDSL 151

Query: 155 AALTPRAEIEGDMGESLP--GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
             L+   E+E    +       +++L+  A R LT  + ++   +V  N     IG  + 
Sbjct: 152 GMLSTSKEMEDIANDKQVRDMTKSQLIKGAFRVLTLKLGQANVPMVVTNHTYDVIGS-YV 210

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
             +   GG  LK+ +S  + + +      K  + GN  + +  K+++     +V   + +
Sbjct: 211 PTKEMGGGTGLKYAASTIIYLSKSKERDSKKEVVGNIIKCEAKKSRLTREGSKVATRLFF 270

Query: 273 GE-GISFFGELIDLGVKASIVDKSG 296
            E G+  +  L++LG +  +  +SG
Sbjct: 271 DERGLDKYYGLLELGEEYGVFKRSG 295


>gi|264665845|gb|ACY70986.1| recombinase A [Tissierella sp. LBN 291]
          Length = 120

 Score =   99 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 85/120 (70%), Positives = 106/120 (88%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F++AEHALD  YA++LGVD++NL+ISQPDTGEQALEI + LVRSGA+DI+V+DSVAAL P
Sbjct: 1   FIEAEHALDPAYAKRLGVDIENLIISQPDTGEQALEIAEALVRSGAIDIVVVDSVAALVP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           +AEIEG+MG+S  G+QARLMSQALRKL  +I++S   +VFINQ+R K+GVMFGSPETT G
Sbjct: 61  KAEIEGEMGDSHIGLQARLMSQALRKLAGTINKSNSTVVFINQLREKVGVMFGSPETTPG 120


>gi|171186395|ref|YP_001795314.1| DNA repair and recombination protein RadA [Thermoproteus
           neutrophilus V24Sta]
 gi|226736610|sp|B1YC14|RADA_THENV RecName: Full=DNA repair and recombination protein radA
 gi|170935607|gb|ACB40868.1| DNA repair and recombination protein RadA [Thermoproteus
           neutrophilus V24Sta]
          Length = 330

 Score =   99 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 92/245 (37%), Gaps = 28/245 (11%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
              + I  +S+G   LD  LG GG     + E+ G   SGKT L        Q       
Sbjct: 91  ERRKTIRRISTGVKALDELLG-GGIETRAVTEVAGEFGSGKTQLCHQLAVMVQLPEERGG 149

Query: 94  TGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVR 142
            G    ++D E+        ++           L N+  ++  + +  + +      +++
Sbjct: 150 LGAKAIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSSDHQMILVDQAKSIIK 209

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
              V ++V+DSV A   R+E  G         + + +++ +  L          +V  NQ
Sbjct: 210 QNNVALLVVDSVIAHF-RSEFPGREN---LAERQQKLNKHVADLLRLADAYDVAVVITNQ 265

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVK 256
           +  +  V FG+P    GGN L   ++ RL +R      R+  I D       +   ++ +
Sbjct: 266 VMAQPDVFFGNPLRPAGGNILAHGATYRLWLRKSKENIRIAKIFDSPYHPEGEVSFRITE 325

Query: 257 NKMAS 261
             +  
Sbjct: 326 EGLVD 330


>gi|14600463|ref|NP_146978.1| DNA repair and recombination protein RadA [Aeropyrum pernix K1]
 gi|13878703|sp|Q9YFY1|RADA_AERPE RecName: Full=DNA repair and recombination protein radA
 gi|5103509|dbj|BAA79030.1| DNA repair and recombination protein RadA [Aeropyrum pernix K1]
          Length = 319

 Score =   99 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 61/284 (21%), Positives = 108/284 (38%), Gaps = 36/284 (12%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           + I+   K ++AA   +   + K A             I+ +++GS  LD  LG GG   
Sbjct: 50  IPILTAQKIVDAAREALNIDF-KTAY----DLKIESMNIKKITTGSRNLDELLG-GGIET 103

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKLGVDL- 119
             I E++G   SGKT +        Q         G   +VD E         ++   + 
Sbjct: 104 KTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKAVYVDTEGTFRWERIEQMARGVG 163

Query: 120 -------KNLLISQPDTGEQALEITDM---LVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
                  KN+   +       + I D    +V++  + ++V+DSV +   RAE  G    
Sbjct: 164 LDPDEVMKNIYWIRAINSHHQIAIVDKLFTMVKNDNIKLVVVDSVTSHF-RAEFPGREN- 221

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
               M+ +L+++ L +L          +V  NQ+  +  V +G P    GG+ L     V
Sbjct: 222 --LAMRQQLLNRHLHQLMRLADIFNVAVVITNQVMARPDVFYGDPTQAVGGHVLGHAPGV 279

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           R+ +++           GN+   +VV        + V     +G
Sbjct: 280 RVYLKKSR---------GNKRIARVVDAPHLPEGETVFAITEWG 314


>gi|159041684|ref|YP_001540936.1| DNA repair and recombination protein RadA [Caldivirga
           maquilingensis IC-167]
 gi|157920519|gb|ABW01946.1| DNA repair and recombination protein RadA [Caldivirga
           maquilingensis IC-167]
          Length = 358

 Score =   99 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 91/241 (37%), Gaps = 28/241 (11%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG------GT 97
            ++ +S+G   LD  LG GG     I E+ G   SGKT          Q         G 
Sbjct: 119 NVQYISTGVKALDELLG-GGIETRAITELAGEFGSGKTNFCHQLSVMVQLPEDKGGLKGK 177

Query: 98  CAFVDAEHALDSIYARKLGV--------DLKNLLISQPDTGEQALEI---TDMLVRSGAV 146
             F+D E+        ++           LKN+  ++    +  + I      ++    +
Sbjct: 178 ALFIDTENTFRPERIVQIAKYRGLDPKEALKNIFYARAYNSDHQMLIIDEAKKIIPKENI 237

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            +IVIDS+ A   R+E  G         + + ++  + +L          +V  NQ+  +
Sbjct: 238 RLIVIDSLVAHF-RSEYPGREN---LAERQQKLNHHIAQLLKLADIYNAAVVVTNQVIAQ 293

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMA 260
             + FG+P    GGN +   ++ R+ +R      RV  I D      ++   K+ +  + 
Sbjct: 294 PDMFFGNPLKPAGGNVIAHGATYRIWLRKGKENIRVARILDSPMHPESEATFKITEEGLI 353

Query: 261 S 261
            
Sbjct: 354 D 354


>gi|315258099|gb|ADT91637.1| recombinase A [Lactococcus lactis subsp. hordniae]
 gi|315258103|gb|ADT91639.1| recombinase A [Lactococcus lactis subsp. cremoris]
          Length = 126

 Score = 99.5 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 75/126 (59%), Positives = 100/126 (79%)

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            AF+DA +ALD  YA+ LGV++  LL+SQPD GEQ L+I + L+ SGAVD++VIDSVAAL
Sbjct: 1   AAFIDAXNALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAAL 60

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
            P+AEI+G++G+S  G+QAR+MSQA+RKL   I+++K   +FINQ+R K+GVMFGSPETT
Sbjct: 61  VPKAEIDGEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETT 120

Query: 218 TGGNAL 223
            GG   
Sbjct: 121 PGGGRA 126


>gi|18181985|dbj|BAB83900.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|18181995|dbj|BAB83905.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|18181997|dbj|BAB83906.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|18181999|dbj|BAB83907.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|18182003|dbj|BAB83909.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|18182005|dbj|BAB83910.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|109689234|dbj|BAE96771.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|109689238|dbj|BAE96773.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|109689240|dbj|BAE96774.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|109689242|dbj|BAE96775.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|109689244|dbj|BAE96776.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|109689246|dbj|BAE96777.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
          Length = 319

 Score = 99.5 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 60/284 (21%), Positives = 108/284 (38%), Gaps = 36/284 (12%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           + I+   K ++AA   +   + K A             I+ +++GS  LD  LG GG   
Sbjct: 50  IPILTAQKIVDAAREALNIDF-KTAY----DLKIESMNIKKITTGSRNLDELLG-GGIET 103

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKLGVDL- 119
             I E++G   SGKT +        Q         G   ++D E         ++   + 
Sbjct: 104 KTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKAVYIDTEGTFRWERIEQMARGVG 163

Query: 120 -------KNLLISQPDTGEQALEITDM---LVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
                  KN+   +       + I D    +V++  + ++V+DSV +   RAE  G    
Sbjct: 164 LDPDEVMKNIYWIRAINSHHQIAIVDKLFTMVKNDNIKLVVVDSVTSHF-RAEFPGREN- 221

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
               M+ +L+++ L +L          +V  NQ+  +  V +G P    GG+ L     V
Sbjct: 222 --LAMRQQLLNRHLHQLMRLADIFNVAVVITNQVMARPDVFYGDPTQAVGGHVLGHAPGV 279

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           R+ +++           GN+   +VV        + V     +G
Sbjct: 280 RVYLKKSR---------GNKRIARVVDAPHLPEGETVFAITEWG 314


>gi|18181987|dbj|BAB83901.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
          Length = 319

 Score = 99.5 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 60/284 (21%), Positives = 108/284 (38%), Gaps = 36/284 (12%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           + I+   K ++AA   +   + K A             I+ +++GS  LD  LG GG   
Sbjct: 50  IPILTAQKIVDAAREALNIDF-KTAY----DLKIESMNIKKITTGSRNLDELLG-GGIET 103

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKLGVDL- 119
             I E++G   SGKT +        Q         G   ++D E         ++   + 
Sbjct: 104 KTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKAVYIDTEGTFRWERIEQMARGVG 163

Query: 120 -------KNLLISQPDTGEQALEITDM---LVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
                  KN+   +       + I D    +V++  + ++V+DSV +   RAE  G    
Sbjct: 164 LDPDEVMKNIYWIRAINSHHQIAIVDKLFTMVKNDNIRLVVVDSVTSHF-RAEFPGREN- 221

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
               M+ +L+++ L +L          +V  NQ+  +  V +G P    GG+ L     V
Sbjct: 222 --LAMRQQLLNRHLHQLMRLADIFNVAVVITNQVMARPDVFYGDPTQAVGGHVLGHAPGV 279

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           R+ +++           GN+   +VV        + V     +G
Sbjct: 280 RVYLKKSR---------GNKRIARVVDAPHLPEGETVFAITEWG 314


>gi|109689236|dbj|BAE96772.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
          Length = 319

 Score = 99.5 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 60/284 (21%), Positives = 108/284 (38%), Gaps = 36/284 (12%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           + I+   K ++AA   +   + K A             I+ +++GS  LD  LG GG   
Sbjct: 50  IPILTAQKIVDAAREALNIDF-KTAY----DLKIESMNIKKITTGSRNLDELLG-GGIET 103

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKLGVDL- 119
             I E++G   SGKT +        Q         G   ++D E         ++   + 
Sbjct: 104 KTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKAVYIDTEGTFRWERIEQMARGVG 163

Query: 120 -------KNLLISQPDTGEQALEITDM---LVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
                  KN+   +       + I D    +V++  + ++V+DSV +   RAE  G    
Sbjct: 164 LDPDEVMKNIYWIRAINSHHQIAIVDKLFTMVKNVNIKLVVVDSVTSHF-RAEFPGREN- 221

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
               M+ +L+++ L +L          +V  NQ+  +  V +G P    GG+ L     V
Sbjct: 222 --LAMRQQLLNRHLHQLMRLADIFNVAVVITNQVMARPDVFYGDPTQAVGGHVLGHAPGV 279

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           R+ +++           GN+   +VV        + V     +G
Sbjct: 280 RVYLKKSR---------GNKRIARVVDAPHLPEGETVFAITEWG 314


>gi|124483981|emb|CAM32808.1| RecA protein [Aeromonas sp. JF2689]
          Length = 116

 Score = 99.5 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 83/114 (72%), Positives = 100/114 (87%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA++QK G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD
Sbjct: 1   IAEAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVD 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           +I++DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT++I  +  + +FIN
Sbjct: 61  VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANWLCIFIN 114


>gi|226328744|ref|ZP_03804262.1| hypothetical protein PROPEN_02644 [Proteus penneri ATCC 35198]
 gi|225201930|gb|EEG84284.1| hypothetical protein PROPEN_02644 [Proteus penneri ATCC 35198]
          Length = 93

 Score = 99.5 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 38/92 (41%), Positives = 61/92 (66%), Gaps = 2/92 (2%)

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
           MYGEGI+ FGELIDLGVK  +V+K+GAW+S+ G+++GQG+ N+  +L+E+ E+   + + 
Sbjct: 1   MYGEGINTFGELIDLGVKHKLVEKAGAWYSYNGEKIGQGKANATTYLKEHPEMYNELNTK 60

Query: 331 LRQNAGLVADSLLQEP--AINTKDDADKDDTD 360
           LR+     A         A ++ D AD ++T+
Sbjct: 61  LREMLLNHAGEFTSAADFANDSDDAADIEETE 92


>gi|18182001|dbj|BAB83908.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
          Length = 319

 Score = 99.5 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 60/284 (21%), Positives = 108/284 (38%), Gaps = 36/284 (12%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           + I+   K ++AA   +   + K A             I+ +++GS  LD  LG GG   
Sbjct: 50  IPILTAQKIVDAAREALNIDF-KTAY----DLKIESMNIKKITTGSRNLDELLG-GGIET 103

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKLGVDL- 119
             I E++G   SGKT +        Q         G   ++D E         ++   + 
Sbjct: 104 KTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKAVYIDTEGTFRWERIEQMARGVG 163

Query: 120 -------KNLLISQPDTGEQALEITDM---LVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
                  KN+   +       + I D    +V++  + ++V+DSV +   RAE  G    
Sbjct: 164 LDPDEVMKNIYWIRAINSHHQIAIVDKLFTMVKNDNIKLVVVDSVTSHF-RAEFPGREN- 221

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
               M+ +L+++ L +L          +V  NQ+  +  V +G P    GG+ L     V
Sbjct: 222 --LAMRQQLLNRHLHQLMRLADIFNVAVVITNQVMARPDVFYGDPTQAVGGHVLGHAPGV 279

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           R+ +++           GN+   +VV        + V     +G
Sbjct: 280 RVYLKKSR---------GNKRIARVVDAPHLPEGEAVFAITEWG 314


>gi|264665839|gb|ACY70983.1| recombinase A [Tissierella sp. AIP 249.98]
 gi|264665843|gb|ACY70985.1| recombinase A [Tissierella sp. AIP 64.01]
 gi|264665847|gb|ACY70987.1| recombinase A [Tissierella sp. LBN 292]
 gi|264665851|gb|ACY70989.1| recombinase A [Tissierella sp. LBN 295]
          Length = 120

 Score = 99.5 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 86/120 (71%), Positives = 106/120 (88%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F++AEHALD  YA+KLGVD++NL+ISQPDTGEQALEI + LVRSGA+DI+V+DSVAAL P
Sbjct: 1   FIEAEHALDPAYAKKLGVDIENLVISQPDTGEQALEIAEALVRSGAIDIVVVDSVAALVP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           +AEIEG+MG+S  G+QARLMSQALRKL  +I++S   +VFINQ+R K+GVMFGSPETT G
Sbjct: 61  KAEIEGEMGDSHIGLQARLMSQALRKLAGTINKSNSTVVFINQLREKVGVMFGSPETTPG 120


>gi|109689248|dbj|BAE96778.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|109689250|dbj|BAE96779.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|109689252|dbj|BAE96780.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|109689254|dbj|BAE96781.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
          Length = 319

 Score = 99.1 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 60/284 (21%), Positives = 108/284 (38%), Gaps = 36/284 (12%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           + I+   K ++AA   +   + K A             I+ +++GS  LD  LG GG   
Sbjct: 50  IPILTAQKIVDAAREALNIDF-KTAY----DLKIESMNIKKITTGSRNLDELLG-GGVET 103

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKLGVDL- 119
             I E++G   SGKT +        Q         G   ++D E         ++   + 
Sbjct: 104 KTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKAVYIDTEGTFRWERIEQMARGVG 163

Query: 120 -------KNLLISQPDTGEQALEITDM---LVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
                  KN+   +       + I D    +V++  + ++V+DSV +   RAE  G    
Sbjct: 164 LDPDEVMKNIYWIRAINSHHQIAIVDKLFTMVKNDNIKLVVVDSVTSHF-RAEFPGREN- 221

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
               M+ +L+++ L +L          +V  NQ+  +  V +G P    GG+ L     V
Sbjct: 222 --LAMRQQLLNRHLHQLMRLADIFNVAVVITNQVMARPDVFYGDPTQAVGGHVLGHAPGV 279

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           R+ +++           GN+   +VV        + V     +G
Sbjct: 280 RVYLKKSR---------GNKRIARVVDAPHLPEGETVFAITEWG 314


>gi|166714600|gb|ABY88031.1| RecA [Stenotrophomonas sp. LMG 10890]
          Length = 97

 Score = 99.1 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 62/97 (63%), Positives = 80/97 (82%)

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           + ++ + +   SPE TTGGNALKFY+SVRLDIRR+G+IK  D I GNQT++KVVKNK+A 
Sbjct: 1   RHKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGNQTKIKVVKNKLAP 60

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           PFKQV  +I+YGEGIS  GELID+GV+A +V+K+GAW
Sbjct: 61  PFKQVITEILYGEGISREGELIDMGVEAKLVEKAGAW 97


>gi|264665853|gb|ACY70990.1| recombinase A [Tissierella sp. IP Prevot 3583]
          Length = 120

 Score = 98.8 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 85/120 (70%), Positives = 105/120 (87%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
            ++AEHALD  YA+KLGVD++NL+ISQPDTGEQALEI + LVRSGA+DI+V+DSVAAL P
Sbjct: 1   LIEAEHALDPAYAKKLGVDIENLVISQPDTGEQALEIAEALVRSGAIDIVVVDSVAALVP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           +AEIEG+MG+S  G+QARLMSQALRKL  +I++S   +VFINQ+R K+GVMFGSPETT G
Sbjct: 61  KAEIEGEMGDSHIGLQARLMSQALRKLAGTINKSNSTVVFINQLREKVGVMFGSPETTPG 120


>gi|226428986|gb|ACO55113.1| recombinase A [Allochromatium vinosum DSM 180]
 gi|226428988|gb|ACO55114.1| recombinase A [Allochromatium minutissimum]
 gi|226428990|gb|ACO55115.1| recombinase A [Allochromatium sp. AX1YPE]
 gi|226428994|gb|ACO55117.1| recombinase A [Allochromatium vinosum]
 gi|226428996|gb|ACO55118.1| recombinase A [Allochromatium vinosum]
          Length = 124

 Score = 98.8 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 93/120 (77%), Positives = 109/120 (90%)

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AFVDAEHALD +YA KLGV++ +LL+SQPDTGEQALEITDMLVRSGAVD++V+
Sbjct: 3   QKLGGTAAFVDAEHALDPVYAEKLGVNMTDLLVSQPDTGEQALEITDMLVRSGAVDVVVV 62

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DSVAALTP+AEIEG+MG+S  G+QARLMSQALRKLT +I RS C ++FINQ+RMKIGVMF
Sbjct: 63  DSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCCVIFINQIRMKIGVMF 122


>gi|180050881|gb|ACB87054.1| RecA [Bacteriovorax sp. T10]
          Length = 118

 Score = 98.8 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 88/118 (74%), Positives = 101/118 (85%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  +S+G LGLD+ LGIGG PKGRI+EIYGPESSGKTTL LH  A+ QK GGT AFVDA
Sbjct: 1   KIPAISTGCLGLDLGLGIGGVPKGRIIEIYGPESSGKTTLTLHIAAECQKEGGTVAFVDA 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           EHALD++YA  LGVD+ N LISQPD+GEQALEI DMLVRSGAVD++++DSVAALTPRA
Sbjct: 61  EHALDTVYASNLGVDIPNTLISQPDSGEQALEIADMLVRSGAVDLLIVDSVAALTPRA 118


>gi|148978204|ref|ZP_01814734.1| recombinase A [Vibrionales bacterium SWAT-3]
 gi|145962626|gb|EDK27902.1| recombinase A [Vibrionales bacterium SWAT-3]
          Length = 64

 Score = 98.8 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/63 (57%), Positives = 48/63 (76%), Gaps = 2/63 (3%)

Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
          +K KAL AAL QI++ +GKG+IM+LG   ++   +E +S+GSL LDIALG GG P GRIV
Sbjct: 4  NKQKALAAALGQIEKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIV 61

Query: 71 EIY 73
          E+Y
Sbjct: 62 EVY 64


>gi|332158421|ref|YP_004423700.1| DNA repair and recombination protein RadA [Pyrococcus sp. NA2]
 gi|331033884|gb|AEC51696.1| DNA repair and recombination protein RadA [Pyrococcus sp. NA2]
          Length = 354

 Score = 98.8 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 109/275 (39%), Gaps = 36/275 (13%)

Query: 18  AALSQIQ---RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AAL  IQ   +    G  M+        E I  +S+GS  LD  LG GG     I E++G
Sbjct: 85  AALKIIQAARKAANLGTFMRADEYLKKRESIGRISTGSKSLDKLLG-GGIETQAITEVFG 143

Query: 75  PESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKLGVD--------LK 120
              SGKT LA       Q         G+  ++D E+        ++  +        LK
Sbjct: 144 EFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIMEIARNRGLDPDEVLK 203

Query: 121 NLLISQPDTGEQAL--------EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           ++ +++       +        +I ++L     V ++++DS+ +   R+E    +G    
Sbjct: 204 HIYVARAFNSNHQMLLVQQAEDKIKELLNSEKPVKLLIVDSLTSHF-RSEY---IGRGAL 259

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
             + + +++ L  L    +  +  +   NQ++ +    FG P    GG+ L   +++R+ 
Sbjct: 260 AERQQKLAKHLADLHRLANLYEIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVY 319

Query: 233 IRRVGSIK------DKDSITGNQTRVKVVKNKMAS 261
           +R+    K      D   +   +   ++ +  +  
Sbjct: 320 LRKGKGGKRVARLIDAPHLPEGEAVFRITEKGIED 354


>gi|221635933|ref|YP_002523809.1| RecA protein [Thermomicrobium roseum DSM 5159]
 gi|221158114|gb|ACM07232.1| RecA protein [Thermomicrobium roseum DSM 5159]
          Length = 357

 Score = 98.8 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 71/285 (24%), Positives = 123/285 (43%), Gaps = 27/285 (9%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
           P+GR++E+ GP  SGK TLA   +   Q+ GG  A++DA H++D       GV + +LL+
Sbjct: 98  PRGRLIELAGPTYSGKRTLAGWFVRSVQRAGGWVAYLDAAHSVDFDRLHHWGVAVLDLLV 157

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           + P +  +ALE+  +LV SGA+D++V+D    L  R+                 + + LR
Sbjct: 158 ALPQSVTEALELARLLVLSGALDLVVLDLPPHLALRS----------------ALDRGLR 201

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
           +L   +       V +            +P   T    L+     +L   R G +  +  
Sbjct: 202 QLRPLLRGLPTAFVVV-------RDRVDTPALATAQVRLRLEPLTQL--VRPGPLAAQAL 252

Query: 245 ITGNQTRVKVVKNKMASP-FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303
             G +  V++ +  +  P    V  ++   EG+    E IDLG+   ++        F  
Sbjct: 253 PEGLRVHVRIERGPLWPPRDPPVPIELCLREGVRVALERIDLGLALGVIRLHSLGLVFAE 312

Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348
             LG+ RE + + L+ +  +   +E  +R    L  D  L  P  
Sbjct: 313 TVLGRTRERAAVRLQSDPSLWSQLEEEIRVRW-LSGDRSLAAPTA 356


>gi|302348270|ref|YP_003815908.1| DNA repair and recombination protein radA [Acidilobus
           saccharovorans 345-15]
 gi|302328682|gb|ADL18877.1| DNA repair and recombination protein radA [Acidilobus
           saccharovorans 345-15]
          Length = 326

 Score = 98.8 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/278 (20%), Positives = 105/278 (37%), Gaps = 36/278 (12%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K +++A   ++  + K A+            +  +++GS  LD  LG GG    +I E 
Sbjct: 61  QKIVDSARQALEIHF-KTAL----ELKKERMSVRKITTGSKALDDLLG-GGIETKQITEF 114

Query: 73  YGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALD----SIYARKLGVD---- 118
           +G   +GKT +        Q         G   ++D E           AR LG+D    
Sbjct: 115 FGEFGTGKTQICHQLSVNVQLPEDKGGLNGKAVYIDTEGTFRWERIEQMARGLGLDPDKV 174

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVD---IIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           + N+   +       + I D L      D   ++V+DS+ +   RAE  G         +
Sbjct: 175 MDNIYWIRAINSHHQMAIVDQLFDMLDKDNIRLVVVDSLTSHF-RAEFPGREN---LAAR 230

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
            +L+++ L +L          +V  NQ+  +  V +G P    GGN +     +R+ +++
Sbjct: 231 QQLLNRHLHQLMRLAEVYDVAVVVTNQVMARPDVFYGDPTAAVGGNVVAHAPGIRVQLKK 290

Query: 236 VGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
             +         N+   ++V        + V     YG
Sbjct: 291 SRN---------NKRIARIVDAPHLPEGETVFAITEYG 319


>gi|294471058|gb|ADE80790.1| recombinase A [Lactococcus lactis]
          Length = 126

 Score = 98.8 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 75/125 (60%), Positives = 100/125 (80%)

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AF+DA +ALD  YA+ LGV++  LL+SQPD GEQ L+I + L+ SGAVD++VIDSVAAL 
Sbjct: 1   AFIDAXNALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAALV 60

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           P+AEI+G++G+S  G+QAR+MSQA+RKL   I+++K   +FINQ+R K+GVMFGSPETT 
Sbjct: 61  PKAEIDGEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETTP 120

Query: 219 GGNAL 223
           GG   
Sbjct: 121 GGGRA 125


>gi|166714593|gb|ABY88028.1| RecA [Stenotrophomonas sp. LMG 10874]
          Length = 97

 Score = 98.8 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 64/97 (65%), Positives = 81/97 (83%)

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           +M++ + +   SPETTTGGNALKFY+SVRLDIRR+G+IK  D I GNQT++KVVKNK+A 
Sbjct: 1   RMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIGNQTKIKVVKNKLAP 60

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
           PFKQV  +I+YGEGIS  GELID+GV A +V+K+GAW
Sbjct: 61  PFKQVITEILYGEGISREGELIDMGVDAKLVEKAGAW 97


>gi|294471046|gb|ADE80784.1| recombinase A [Lactococcus lactis subsp. cremoris]
          Length = 125

 Score = 98.8 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 75/125 (60%), Positives = 100/125 (80%)

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AF+DA +ALD  YA+ LGV++  LL+SQPD GEQ L+I + L+ SGAVD++VIDSVAAL 
Sbjct: 1   AFIDAXNALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAALV 60

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           P+AEI+G++G+S  G+QAR+MSQA+RKL   I+++K   +FINQ+R K+GVMFGSPETT 
Sbjct: 61  PKAEIDGEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETTP 120

Query: 219 GGNAL 223
           GG   
Sbjct: 121 GGGRA 125


>gi|294661454|ref|YP_003579907.1| UvsX RecA-like recombination protein [Klebsiella phage KP15]
 gi|292660615|gb|ADE34863.1| UvsX RecA-like recombination protein [Klebsiella phage KP15]
          Length = 385

 Score = 98.8 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 100/267 (37%), Gaps = 14/267 (5%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTI--AQS 91
           S+  +F  I +  +    L++AL     GG   G +    GP    K+ L L T+     
Sbjct: 23  SESDVFNNITITRTRVPILNLALSGAFNGGLTSG-LTLFAGPSKHFKSNLGLLTVAAYLK 81

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR---SGAVDI 148
                 C F D+E  +   Y + +GVD   ++ ++  T EQ        +     G   I
Sbjct: 82  TYEDAVCLFYDSEKGVTKSYLKSMGVDPDRVVYTRITTVEQLRNDVVSQLNALERGDKVI 141

Query: 149 IVIDSVAALTPRAEIEGDM--GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           + +DSV     + E+   +   +     +A+ +    R +T  ++     +V I      
Sbjct: 142 VFVDSVGNTASKKELADALSDNDKQDMTRAKALKGMFRMVTPYLADLDIPMVCICHTY-D 200

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
              M+     + G   +    +  +       +K+   + G    + + K++      + 
Sbjct: 201 TQEMYSKKVISGGTGLMYSADTAII--LGKQQVKEGTEVVGYDFIMNIEKSRFVKEKSKF 258

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVD 293
              + Y  GIS +  L+DL ++ + V 
Sbjct: 259 PLHVTYEGGISMYSGLLDLAMEMNFVQ 285


>gi|227828152|ref|YP_002829932.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           M.14.25]
 gi|227830859|ref|YP_002832639.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           L.S.2.15]
 gi|229579745|ref|YP_002838144.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           Y.G.57.14]
 gi|229581586|ref|YP_002839985.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           Y.N.15.51]
 gi|229585381|ref|YP_002843883.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           M.16.27]
 gi|238620342|ref|YP_002915168.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           M.16.4]
 gi|284998366|ref|YP_003420134.1| DNA repair or recombination protein RadA [Sulfolobus islandicus
           L.D.8.5]
 gi|259551812|sp|C3MZK6|RADA_SULIA RecName: Full=DNA repair and recombination protein radA
 gi|259551815|sp|C4KIT6|RADA_SULIK RecName: Full=DNA repair and recombination protein radA
 gi|259551818|sp|C3MRI1|RADA_SULIL RecName: Full=DNA repair and recombination protein radA
 gi|259551822|sp|C3MY77|RADA_SULIM RecName: Full=DNA repair and recombination protein radA
 gi|259551825|sp|C3NFU5|RADA_SULIN RecName: Full=DNA repair and recombination protein radA
 gi|259551829|sp|C3N7M8|RADA_SULIY RecName: Full=DNA repair and recombination protein radA
 gi|227457307|gb|ACP35994.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           L.S.2.15]
 gi|227459948|gb|ACP38634.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           M.14.25]
 gi|228010460|gb|ACP46222.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           Y.G.57.14]
 gi|228012302|gb|ACP48063.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           Y.N.15.51]
 gi|228020431|gb|ACP55838.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           M.16.27]
 gi|238381412|gb|ACR42500.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           M.16.4]
 gi|284446262|gb|ADB87764.1| DNA repair or recombination protein RadA [Sulfolobus islandicus
           L.D.8.5]
 gi|323475205|gb|ADX85811.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           REY15A]
 gi|323477937|gb|ADX83175.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           HVE10/4]
          Length = 324

 Score = 98.8 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 103/272 (37%), Gaps = 37/272 (13%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K ++ A   +   + K A+            ++ +S+GS  LD  L  GG     + E 
Sbjct: 59  QKIIKEARDALDIRF-KTAL----EVKKERMNVKKISTGSQALDGLLA-GGIETRTMTEF 112

Query: 73  YGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALD----SIYARKLGVDLKN- 121
           +G   SGKT L        Q         G   ++D E           A+ LG+D+ N 
Sbjct: 113 FGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNV 172

Query: 122 ---LLISQPDTGEQALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEGDMGESLPGM 174
              +   +    +  + I D L    + D    +IV+DSV +   RAE  G        +
Sbjct: 173 MNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHF-RAEYPGREN---LAV 228

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
           + + +++ L +LT         ++  NQ+  +  + +G P    GG+ L     +R+ ++
Sbjct: 229 RQQKLNKHLHQLTRLAEVYDIAVIITNQVMARPDMFYGDPTVAVGGHTLYHVPGIRIQLK 288

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           +           GN+   +VV        + V
Sbjct: 289 KSR---------GNRRIARVVDAPHLPEGEVV 311


>gi|15897194|ref|NP_341799.1| DNA repair and recombination protein RadA [Sulfolobus solfataricus
           P2]
 gi|284174439|ref|ZP_06388408.1| DNA repair and recombination protein RadA [Sulfolobus solfataricus
           98/2]
 gi|14286170|sp|Q55075|RADA_SULSO RecName: Full=DNA repair and recombination protein radA
 gi|126030236|pdb|2DFL|A Chain A, Crystal Structure Of Left-Handed Rada Filament
 gi|160286393|pdb|2Z43|A Chain A, Structure Of A Twinned Crystal Of Rada
 gi|160286394|pdb|2Z43|B Chain B, Structure Of A Twinned Crystal Of Rada
 gi|160286395|pdb|2Z43|C Chain C, Structure Of A Twinned Crystal Of Rada
 gi|226438154|pdb|2ZUB|A Chain A, Left Handed Rada
 gi|226438155|pdb|2ZUB|B Chain B, Left Handed Rada
 gi|226438156|pdb|2ZUC|A Chain A, Crystal Structure Of Left-Handed Rada Filament
 gi|226438157|pdb|2ZUC|B Chain B, Crystal Structure Of Left-Handed Rada Filament
 gi|226438158|pdb|2ZUD|A Chain A, Crystal Structure Of Left-Handed Rada Filament
 gi|226438159|pdb|2ZUD|B Chain B, Crystal Structure Of Left-Handed Rada Filament
 gi|13813387|gb|AAK40589.1| DNA repair protein radA (radA) [Sulfolobus solfataricus P2]
 gi|261601861|gb|ACX91464.1| DNA repair and recombination protein RadA [Sulfolobus solfataricus
           98/2]
          Length = 324

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 103/272 (37%), Gaps = 37/272 (13%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K ++ A   +   + K A+            ++ +S+GS  LD  L  GG     + E 
Sbjct: 59  QKIIKEARDALDIRF-KTAL----EVKKERMNVKKISTGSQALDGLLA-GGIETRTMTEF 112

Query: 73  YGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALD----SIYARKLGVDLKN- 121
           +G   SGKT L        Q         G   ++D E           A+ LG+D+ N 
Sbjct: 113 FGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNV 172

Query: 122 ---LLISQPDTGEQALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEGDMGESLPGM 174
              +   +    +  + I D L    + D    +IV+DSV +   RAE  G        +
Sbjct: 173 MNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHF-RAEYPGREN---LAV 228

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
           + + +++ L +LT         ++  NQ+  +  + +G P    GG+ L     +R+ ++
Sbjct: 229 RQQKLNKHLHQLTRLAEVYDIAVIITNQVMARPDMFYGDPTVAVGGHTLYHVPGIRIQLK 288

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           +           GN+   +VV        + V
Sbjct: 289 KSR---------GNRRIARVVDAPHLPEGEVV 311


>gi|14520459|ref|NP_125934.1| DNA repair and recombination protein RadA [Pyrococcus abyssi GE5]
 gi|13878699|sp|Q9V233|RADA_PYRAB RecName: Full=DNA repair and recombination protein radA
 gi|5457674|emb|CAB49165.1| radA DNA repair protein rad51 : DNA repair and recombination
           protein radA [Pyrococcus abyssi GE5]
          Length = 356

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/275 (20%), Positives = 110/275 (40%), Gaps = 36/275 (13%)

Query: 18  AALSQIQ---RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AAL  IQ   +    G  M+        E I  +S+GS  LD  LG GG     I E++G
Sbjct: 87  AALKIIQAARKAANLGTFMRADEYLKKRESIGRISTGSKSLDKLLG-GGIETQAITEVFG 145

Query: 75  PESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKLGVD--------LK 120
              SGKT LA       Q         G+  ++D E+       R++  +        LK
Sbjct: 146 EFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLK 205

Query: 121 NLLISQPDTGEQAL--------EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           ++ +++       +        +I ++L     V ++++DS+ +   R+E    +G    
Sbjct: 206 HIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHF-RSEY---IGRGAL 261

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
             + + +++ L  L    +  +  +   NQ++ +    FG P    GG+ L   +++R+ 
Sbjct: 262 AERQQKLAKHLADLHRLANLYEIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVY 321

Query: 233 IRRVGSIK------DKDSITGNQTRVKVVKNKMAS 261
           +R+    K      D   +   +   ++ +  +  
Sbjct: 322 LRKGKGGKRVARLIDAPHLPEGEAVFRITEKGIED 356


>gi|154600|gb|AAA27363.1| recA protein [Synechococcus sp.]
          Length = 98

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/98 (50%), Positives = 68/98 (69%)

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +R KIG+ +G+PE TTGG ALKFY+SVRLDIRR+ ++K        + +VKV KNK+A P
Sbjct: 1   IRQKIGISYGNPEVTTGGTALKFYASVRLDIRRIQTLKKGAKGICIRAKVKVAKNKVAPP 60

Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
           F+  EFDI++G+GIS  G ++D   K     + GAW+S
Sbjct: 61  FRIAEFDIIFGKGISRVGCMLDSRNKQCHYARKGAWYS 98


>gi|33087805|gb|AAP93033.1| recombination protein A [Yersinia enterocolitica]
          Length = 101

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 76/101 (75%), Positives = 88/101 (87%)

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           EIYGPESSGKTTL L  IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG
Sbjct: 1   EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 60

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S 
Sbjct: 61  EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSH 101


>gi|166714588|gb|ABY88026.1| RecA [Stenotrophomonas sp. LMG 1108]
          Length = 97

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 62/92 (67%), Positives = 76/92 (82%)

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           + +   SPE TTGGNALKFY+SVRLDIRR+G+IK  D I GNQT++KVVKNK+A PFKQV
Sbjct: 6   VMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGNQTKIKVVKNKLAPPFKQV 65

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
             +I+YGEGIS  GELID+GV A +V+K+GAW
Sbjct: 66  ITEILYGEGISREGELIDMGVDAKLVEKAGAW 97


>gi|1710061|sp|P49985|RECA_RUMAL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|927284|gb|AAA73925.1| recombination enzyme [Ruminococcus albus 7]
          Length = 121

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 81/121 (66%), Positives = 101/121 (83%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
            ++AEHALD  YA  LGV + +LL+SQPDTGEQ LEI D L+ SGAVDI+V+DSVAAL P
Sbjct: 1   LIEAEHALDPQYATALGVQINDLLLSQPDTGEQGLEIADALIASGAVDIVVVDSVAALVP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           RAEIEG+MG++  G+QARLMSQALRKL+  I+++K I +FINQ+R K+GVMFG+PETT G
Sbjct: 61  RAEIEGEMGDTHVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTPG 120

Query: 220 G 220
           G
Sbjct: 121 G 121


>gi|213012366|gb|ACJ38749.1| recombination-repair protein [Vibrio alginolyticus]
          Length = 113

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 79/113 (69%), Positives = 101/113 (89%)

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           EHALD +YA+KLGVD+  LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEI
Sbjct: 1   EHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEI 60

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPET 216
           EG+MG+S  G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PET
Sbjct: 61  EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPET 113


>gi|66391488|ref|YP_239013.1| UvsX RecA-like recombination protein [Enterobacteria phage RB43]
 gi|62288576|gb|AAX78559.1| UvsX RecA-like recombination protein [Enterobacteria phage RB43]
          Length = 386

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 99/267 (37%), Gaps = 14/267 (5%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTI--AQS 91
           S+  +F  I    +    L++AL     GG   G +    GP    K+ L L T+     
Sbjct: 23  SESDVFNNITKTRTRVPILNLALSGAFDGGLTSG-LTLFAGPSKHFKSNLGLVTVSAYLK 81

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR---SGAVDI 148
                 C F D+E  +   Y + +GVD   ++ ++  T EQ        +     G   I
Sbjct: 82  ANEDAVCLFYDSEKGVTKSYLKSMGVDPDRVVYTRITTVEQLRNDVVSQLDALERGDKVI 141

Query: 149 IVIDSVAALTPRAEIEGDM--GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           I +DSV     + E+   +   +     +A+ +    R +T  ++     +V I      
Sbjct: 142 IFVDSVGNTASKKELADALSDNDKQDMTRAKALKGMFRMVTPYLADLDIPMVCICHTY-D 200

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
              M+     + G   +    +  +       +K+   + G    + + K++      + 
Sbjct: 201 TQEMYSKKVISGGTGLMYSADTAII--LGKQQVKEGTEVVGYDFIMNIEKSRFVKEKSKF 258

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVD 293
              + Y  GIS +  L+DL ++ + V 
Sbjct: 259 PLHVTYEGGISMYSGLLDLAMEMNFVQ 285


>gi|166714590|gb|ABY88027.1| RecA [Stenotrophomonas sp. LMG 6608]
          Length = 93

 Score = 98.0 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 62/92 (67%), Positives = 77/92 (83%)

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           + +   SPE TTGGNALKFY+SVRLDIRR+G+IK  D I GNQT++KVVKNK+A PFKQV
Sbjct: 2   VMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGNQTKIKVVKNKLAPPFKQV 61

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298
             +I+YGEGIS  GELID+GV+A +V+K+GAW
Sbjct: 62  ITEILYGEGISREGELIDMGVEAKLVEKAGAW 93


>gi|328867696|gb|EGG16078.1| hypothetical protein DFA_09750 [Dictyostelium fasciculatum]
          Length = 412

 Score = 98.0 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 107/245 (43%), Gaps = 28/245 (11%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA-- 99
           FE I+   +G   LD  L IGG P   I E+ G  S+GK+TL+L  ++  QK     A  
Sbjct: 97  FEKIKTTPTGIASLDYKLLIGGLPFNHITELCGDSSTGKSTLSLRWMSLLQKQDSDAATL 156

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
            +D+E++  S +A K  VDL    ++ P   +   EI    +      +IV+DS  +L P
Sbjct: 157 LIDSENSFTSDWATKCNVDLDRCYVAHPKNSDDCFEILFSSLEKKLFKMIVVDSFFSLIP 216

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI------------ 207
             +I               ++ AL  L S +  S C+LV INQ+R  I            
Sbjct: 217 NPKISSKYSLYS-DDPKYTLNFALTYLKSLLKDSGCVLVIINQLRSNIIKPPSSTIKKIK 275

Query: 208 ----------GVMFGSPETTTGGNALKFYSSVRLDIRRVGSI---KDKDSITGNQTRVKV 254
                          +P+ +   + +   + ++++I+R   +    D + I+G +T V +
Sbjct: 276 IKERLELPTNNPTIDNPDISFANSIIDGLTDLKIEIQRDRYLFSSNDDEEISGIRTNVLI 335

Query: 255 VKNKM 259
            KN +
Sbjct: 336 KKNSL 340


>gi|62738997|pdb|2BKE|A Chain A, Conformational Flexibility Revealed By The Crystal
           Structure Of A Crenarchaeal Rada
          Length = 324

 Score = 98.0 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 101/272 (37%), Gaps = 37/272 (13%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K ++ A   +   + K A+            ++ +S+GS  LD  L  GG       E 
Sbjct: 59  QKIIKEARDALDIRF-KTAL----EVKKERXNVKKISTGSQALDGLLA-GGIETRTXTEF 112

Query: 73  YGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALD----SIYARKLGVDLKN- 121
           +G   SGKT L        Q         G   ++D E           A+ LG+D+ N 
Sbjct: 113 FGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENXAKALGLDIDNV 172

Query: 122 ---LLISQPDTGEQALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEGDMGESLPGM 174
              +   +    +  + I D L    + D    +IV+DSV +   RAE  G        +
Sbjct: 173 XNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHF-RAEYPGREN---LAV 228

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
           + + +++ L +LT         ++  NQ+  +    +G P    GG+ L     +R+ ++
Sbjct: 229 RQQKLNKHLHQLTRLAEVYDIAVIITNQVXARPDXFYGDPTVAVGGHTLYHVPGIRIQLK 288

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           +           GN+   +VV        + V
Sbjct: 289 KSR---------GNRRIARVVDAPHLPEGEVV 311


>gi|284165434|ref|YP_003403713.1| DNA repair and recombination protein RadB [Haloterrigena turkmenica
           DSM 5511]
 gi|284015089|gb|ADB61040.1| DNA repair and recombination protein RadB [Haloterrigena turkmenica
           DSM 5511]
          Length = 235

 Score = 98.0 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 95/231 (41%), Gaps = 25/231 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + +G   +D  LG GGF +G + ++YGP ++GKT LAL    ++   GGT  +VD E 
Sbjct: 4   EAIPTGCGPVDELLG-GGFERGTVTQVYGPPAAGKTNLALSAAVETAVAGGTAVYVDTEG 62

Query: 106 ALDSIYARKLGVDLKN----------LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
                + + L   + +          ++    D  EQ+  + D    +   D+IV+DS  
Sbjct: 63  VSVDRFQQLLSARVDDEDVEAVASRIVIEDAVDFEEQSEAVRDTEEFAERADLIVLDSAT 122

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
               R E     GES  G   R +++ +  L S   +    +V  NQ+            
Sbjct: 123 GFY-RLE---RTGESDGGEALRSVARQVTHLLSLARKHDLAVVLTNQVFADPDA---DRT 175

Query: 216 TTTGGNALKFYSSVRLDI-------RRVGSIKDKDSITGNQTRVKVVKNKM 259
              GGN L+ ++ V L +       RR    K +    G   + ++    +
Sbjct: 176 RALGGNTLEHWTGVVLRLERFRGGNRRATLEKHRSKAVGESVQFRITDRGL 226


>gi|1378036|gb|AAC44123.1| RadA [Sulfolobus solfataricus]
          Length = 324

 Score = 98.0 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 104/272 (38%), Gaps = 37/272 (13%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K ++ A   +   + K A+            ++ +S+GS  LD  L  GG     + E 
Sbjct: 59  QKIIKEARDALDIRF-KTAL----EVKKERMNVKKISTGSQALDGLLA-GGIETRTMTEF 112

Query: 73  YGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALD----SIYARKLGVDLKN- 121
           +G   SGKT L        Q         G   ++D E           A+ LG+D+ N 
Sbjct: 113 FGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNV 172

Query: 122 ---LLISQPDTGEQALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEGDMGESLPGM 174
              +   +    +  + I D L    + D    +IV+DSV +   RAE  G     +  +
Sbjct: 173 MNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHF-RAEYPGR---EILAV 228

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
           + + +++ L +LT         ++  NQ+  +  + +G P    GG+ L     +R+ ++
Sbjct: 229 RQQKLNKHLHQLTRLAEVYDIAVIITNQVMARPDMFYGDPTVAVGGHTLYHVPGIRIQLK 288

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           +           GN+   +VV        + V
Sbjct: 289 KSR---------GNRRIARVVDAPHLPEGEVV 311


>gi|50556100|ref|XP_505458.1| YALI0F15477p [Yarrowia lipolytica]
 gi|49651328|emb|CAG78267.1| YALI0F15477p [Yarrowia lipolytica]
          Length = 329

 Score = 98.0 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 92/254 (36%), Gaps = 30/254 (11%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-- 94
                  G+  +++GS  LD  LG GG   G I E++G   +GK+ L        Q    
Sbjct: 80  DVHQTRSGLITLTTGSSQLDTLLG-GGIETGAITEMFGEFRTGKSQLCHTLAVTCQLPID 138

Query: 95  ----GGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDM--- 139
                G C ++D E         ++           L N+  ++    +  +++  M   
Sbjct: 139 QGGGEGKCLYIDTEGTFRPERLHQIARRYGLNGDEVLDNVAYARAHNSDHQMQLLQMAAN 198

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           ++       +++DS+ AL          G      +   +++ +R L          +V 
Sbjct: 199 MMTKSRFSCLIVDSIMALYR----TDYAGRGELSARQTHVAKFMRTLQRLADEFGIAVVI 254

Query: 200 INQMRMKIG--VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTR 251
            NQ+  ++   V    P+   GGN +   S+ RL  +      R+  I D   +  +   
Sbjct: 255 TNQVVAQVDGAVFNPDPKKPIGGNIVAHASTTRLYFKKGRGVQRICKIYDSPCLPESGCV 314

Query: 252 VKVVKNKMASPFKQ 265
             + ++ +  P  +
Sbjct: 315 FAIHEDGIGDPKDE 328


>gi|18181993|dbj|BAB83904.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
          Length = 319

 Score = 98.0 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 59/284 (20%), Positives = 108/284 (38%), Gaps = 36/284 (12%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           + I+   K ++AA   +   + K A             I+ +++GS  LD  LG GG   
Sbjct: 50  IPILTAQKIVDAAREALNIDF-KTAY----DLKIESMNIKKITTGSRNLDELLG-GGIET 103

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKLGVDL- 119
             I E++G   SGKT +        Q         G   ++D E         ++   + 
Sbjct: 104 KTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKAVYIDTEGTFRWERIEQMARGVG 163

Query: 120 -------KNLLISQPDTGEQALEITDM---LVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
                  KN+   +       + I D    +V++  + ++V+DSV +   RAE  G    
Sbjct: 164 LDPDEVMKNIYWIRAINSHHQIAIVDKLFTMVKNDNIKLVVVDSVTSHF-RAEFPGREN- 221

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
               M+ +L+++ L +L          +V  NQ+  +  V +G P    GG+ L     V
Sbjct: 222 --LAMRQQLLNRHLHQLMRLADIFNVAVVITNQVMARPDVFYGDPTQAVGGHVLGHAPGV 279

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           R+ +++           G++   +VV        + V     +G
Sbjct: 280 RVYLKKSR---------GSKRIARVVDAPHLPEGETVFAITEWG 314


>gi|328477892|gb|EGF47843.1| RecA recombinase [Lactobacillus rhamnosus MTCC 5462]
          Length = 145

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 5/118 (4%)

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK----ASIVDKSGAWFSFKGQR 305
           +++KV KNK+A PFK VE  + +G GI    ++I+L         ++ KSG+W+++  +R
Sbjct: 5   SKLKVTKNKVAPPFKTVETTMSFGHGIEHNTDMINLATDKDNDLDVITKSGSWYNYGKER 64

Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           LGQG  N+  +L E+ E+++ IE+ +R+ +         E     KD+    D    E
Sbjct: 65  LGQGLVNASHYLDEHPEVSKEIEAKIREQSAPKPKE-EDEKKDTAKDEKTTADKKPEE 121


>gi|328475000|gb|EGF45792.1| recombinase A [Listeria monocytogenes 220]
          Length = 88

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 56/82 (68%), Gaps = 2/82 (2%)

Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330
           MYGEGIS  GEL+D+  +  +++KSG+W+S+K +R+GQGREN+K +L+E+ +I + I   
Sbjct: 1   MYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGRENAKQYLKEHTDIRDEISKR 60

Query: 331 LRQNAGLVADSLLQEPAINTKD 352
           +R+   +  D   +EP    ++
Sbjct: 61  VREEYEI--DGSNKEPLDEGEE 80


>gi|326782178|ref|YP_004322579.1| UvsX RecA-like protein [Prochlorococcus phage P-HM1]
 gi|310004385|gb|ADO98778.1| UvsX RecA-like protein [Prochlorococcus phage P-HM1]
          Length = 352

 Score = 97.2 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 60/298 (20%), Positives = 124/298 (41%), Gaps = 25/298 (8%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG----GFPKGRIVE 71
           L+  + +I   Y       L S+G + +    V +GS   + AL  G    G P  +I  
Sbjct: 20  LKNIVKEIDNDYA-----GLLSEGGVGDIESFVDTGSYIFN-ALISGSIYKGIPSNKITA 73

Query: 72  IYGPESSGKTTLALHTIAQS--QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           + G   +GKT   L  +             + ++E A+      + G+D   +++    T
Sbjct: 74  LAGESGTGKTFFCLGVVQNYLRDNPDAGVVYFESEAAVTKDMIDERGIDGSRMILVPVTT 133

Query: 130 GEQ----ALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEGDMG--ESLPGMQARLM 179
            ++    A++I D  +     D    + V+DS+  L+   E+       ++    +A+++
Sbjct: 134 VQEFRTNAIQILDKYLEQKTEDRKPMMFVLDSLGMLSTSKELADSAEGKDTRDMTRAQVV 193

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
               R LT  + ++   L+  N     +G  +   +   GG+ LK+ +S  + + +    
Sbjct: 194 KAIFRILTLKLGKANVPLLVTNHTYDVVGA-YIPTKEMGGGSGLKYAASTIIYLSKK-KE 251

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG-EGISFFGELIDLGVKASIVDKSG 296
           KD   + GN  + K  K+++      V+  + +   G+  +  L++LG K  I ++ G
Sbjct: 252 KDGKEVIGNIIKAKAAKSRLTKENASVDTRLYFDARGLDKYYGLLELGEKYGIFERKG 309


>gi|124027840|ref|YP_001013160.1| DNA repair and recombination protein RadA [Hyperthermus butylicus
           DSM 5456]
 gi|123978534|gb|ABM80815.1| DNA repair and recombination protein [Hyperthermus butylicus DSM
           5456]
          Length = 323

 Score = 97.2 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 104/283 (36%), Gaps = 41/283 (14%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            + ++AA   +   + K A+               +++GS  LD  LG GG     I E 
Sbjct: 54  QRIIKAAREALDIRF-KTAL----EVKKERMQTRKITTGSRNLDDLLG-GGIETKTITEF 107

Query: 73  YGPESSGKTTLALHTIAQSQ---KTGGT--------CAFVDAEHALD----SIYARKLGV 117
           +G   SGKT +        Q   + GG           ++D E           A++ G+
Sbjct: 108 FGEFGSGKTQICHQLAVNVQLPIEKGGLSTQDRVAKAVYIDTEGTFRWERLENMAKRWGL 167

Query: 118 DLK----NLLISQPDTGEQALEITDM---LVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           D      N+   +    +  + I D    +V    + ++++DSV +   RAE  G     
Sbjct: 168 DPDEVMSNIFYIRAINSDHQMAIVDELFNIVPKENIKLVIVDSVTSHF-RAEYPGREN-- 224

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
               + + +++ L +L          +V  NQ+  +  V +G P    GG+ L     VR
Sbjct: 225 -LAARQQKLNRHLHQLAKLAEVYDLAVVITNQVMARPDVFYGDPTQAVGGHVLYHAPGVR 283

Query: 231 LDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           + +R+           GN+   ++V        + V     YG
Sbjct: 284 VQLRKSR---------GNKRIARIVDAPHLPEGEAVFVITDYG 317


>gi|297527452|ref|YP_003669476.1| DNA repair and recombination protein RadA [Staphylothermus
           hellenicus DSM 12710]
 gi|297256368|gb|ADI32577.1| DNA repair and recombination protein RadA [Staphylothermus
           hellenicus DSM 12710]
          Length = 319

 Score = 96.8 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 91/244 (37%), Gaps = 28/244 (11%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGT 97
            +  +++GS  LD  LG GG     I E YG   +GKT +        Q         G 
Sbjct: 81  SVRKITTGSKNLDDLLG-GGIETKTITEFYGEYGTGKTQICHQLSVSVQLPPERGGLAGK 139

Query: 98  CAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEI---TDMLVRSGAV 146
             +VD E           AR LG+D    ++N+   +    +  + I       V     
Sbjct: 140 AVYVDTEGTFRWERIEAMARGLGLDPDEAMENIYYQRAYNSDHQIAIVEELFSFVPEHDA 199

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++VIDSV +   RAE  G         + + +++ L +L          +V  NQ+  +
Sbjct: 200 KLVVIDSVTSHF-RAEYPGREN---LATRQQKLNKHLHQLVRLAEAYNIAVVVTNQVMAR 255

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK------DKDSITGNQTRVKVVKNKMA 260
             V +G P    GG+ L     VR+ +R+    K      D   +   +    +V   + 
Sbjct: 256 PDVFYGDPTQAVGGHVLAHTPGVRIQLRKAKGHKRIARVVDAPHLPEGEAIFVIVDEGIR 315

Query: 261 SPFK 264
            P +
Sbjct: 316 DPEE 319


>gi|37956376|gb|AAP15362.1| RecA [Geobacter thiogenes]
          Length = 114

 Score = 96.8 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 84/112 (75%), Positives = 97/112 (86%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           FVDAEH LD  YARKLGV   +LL+SQPDTGEQALEI + LVRSGA+DI+VIDSVAAL P
Sbjct: 2   FVDAEHDLDVGYARKLGVRTDDLLVSQPDTGEQALEIAETLVRSGAIDILVIDSVAALVP 61

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           +AEIEG+MG+S  G+QARLMSQALRKLT  IS+S C ++FINQ+RMKIGVMF
Sbjct: 62  KAEIEGEMGDSHVGLQARLMSQALRKLTGIISKSNCCVIFINQIRMKIGVMF 113


>gi|180050863|gb|ACB87045.1| RecA [Bacteriovorax sp. MIA4]
          Length = 116

 Score = 96.8 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 87/116 (75%), Positives = 100/116 (86%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
             +S+G LGLD+ LGIGG PKGRI+EIYGPESSGKTTL LH  A+ QK GGT AFVDAEH
Sbjct: 1   PAISTGCLGLDLGLGIGGVPKGRIIEIYGPESSGKTTLTLHIAAECQKEGGTVAFVDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           ALD++YA  LGVD+ N LISQPD+GEQALEI DMLVRSGAVD++++DSVAALTPRA
Sbjct: 61  ALDTVYASNLGVDIPNTLISQPDSGEQALEIADMLVRSGAVDLLIVDSVAALTPRA 116


>gi|158631822|gb|ABW75016.1| RecA [Sinorhizobium sp. CCBAU 83317]
          Length = 165

 Score = 96.4 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 83/150 (55%), Positives = 99/150 (66%), Gaps = 3/150 (2%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GSLG   + G  G PKGRI+EIYGPESSGKTTLAL TIA++QK GG   FVDAEHALD 
Sbjct: 6   TGSLG-STSRGNSGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGISGFVDAEHALDP 64

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +YARKLGVDL+NLLIS PDTGEQALEITD LVRSGA+D  +         RA  +  M  
Sbjct: 65  VYARKLGVDLENLLISHPDTGEQALEITDTLVRSGAID--ISRHRFGGRTRAARQKSMAR 122

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVF 199
                +A      +++L S   +S C   +
Sbjct: 123 CSTVCRACRSRLMIKELRSLRYQSPCQTAW 152


>gi|294471060|gb|ADE80791.1| recombinase A [Lactococcus lactis]
          Length = 121

 Score = 96.4 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 73/121 (60%), Positives = 98/121 (80%)

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            AF+DA +ALD  YA+ LGV++  LL+SQPD GEQ L+I + L+ SGAVD++VIDSVAAL
Sbjct: 1   AAFIDAANALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAAL 60

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
            P+AEI+G++G+S  G+QAR+MSQA+RKL   I+++K   +FINQ+R K+GVMFGSPETT
Sbjct: 61  VPKAEIDGEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETT 120

Query: 218 T 218
            
Sbjct: 121 P 121


>gi|156937796|ref|YP_001435592.1| DNA repair and recombination protein RadA [Ignicoccus hospitalis
           KIN4/I]
 gi|166218760|sp|A8AB83|RADA_IGNH4 RecName: Full=DNA repair and recombination protein radA
 gi|156566780|gb|ABU82185.1| DNA repair and recombination protein RadA [Ignicoccus hospitalis
           KIN4/I]
          Length = 327

 Score = 96.4 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 89/241 (36%), Gaps = 36/241 (14%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGGT--- 97
            +  +++GS  LD  LG GG     I E +G   SGK+ L        Q   + GG    
Sbjct: 84  NLRKITTGSKNLDDLLG-GGIETKTITEFFGEFGSGKSQLCHQASVNVQLPLEQGGLSEG 142

Query: 98  -----CAFVDAEHALDSIYARKLGV--------DLKNLLISQPDTGEQALEITDML---V 141
                  +VD E         ++           + N+   +    +  + I + L   V
Sbjct: 143 DKVAKAVYVDTEGTFRWERIEQMAKCLGLDPDQVMDNIYYIRAVNSDHQMAIVEELFNLV 202

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
               V +IV+DSV +   RAE  G        ++ + +++ L +L          ++  N
Sbjct: 203 PKENVKLIVVDSVTSHF-RAEYPGREN---LAVRQQKLNKHLHQLGKLAEVYNTAVIITN 258

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           Q+  +  V +G P    GG+ L     VR+ +++           GN+   +VV      
Sbjct: 259 QVMARPDVFYGDPTQAVGGHVLYHAPGVRVQLKKAR---------GNKRIARVVDAPHLP 309

Query: 262 P 262
            
Sbjct: 310 E 310


>gi|307212541|gb|EFN88264.1| DNA repair protein RAD51-like protein 1 [Harpegnathos saltator]
          Length = 340

 Score = 96.1 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 94/249 (37%), Gaps = 32/249 (12%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
            I   I  +++GS  LD  LG GG   G I E++G   SGK+ L        Q       
Sbjct: 94  QIRANIVYITTGSKELDNLLG-GGIETGSITELFGEFRSGKSQLCHTLAVNCQLPISMGG 152

Query: 94  TGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVR 142
             G C ++D E+         +           L N+  ++    +   ++      ++ 
Sbjct: 153 AEGRCLYIDTENGFRPERLTAVAERYKISGDSVLDNVACARAFNTDHQTQLVVQASAMMT 212

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                +++IDS  +L  R +  G    S    + + +++ LR L          +V  NQ
Sbjct: 213 EARYALLIIDSATSLY-RTDYCGRGELS---ERQQHLARFLRMLLRIADEHGIAVVITNQ 268

Query: 203 MRMKIG----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRV 252
           +  ++     +  G  +   GG+ L   S+ RL +R      R+  I D   +  N+   
Sbjct: 269 VVAQVDGAASMFGGDQKKPIGGHILAHSSTTRLYLRKGRGETRICKIYDSPCLPENEATF 328

Query: 253 KVVKNKMAS 261
            +  + ++ 
Sbjct: 329 AIYSDGVSD 337


>gi|326783127|ref|YP_004323524.1| UvsX RecA-like protein [Prochlorococcus phage P-HM2]
 gi|310005545|gb|ADO99933.1| UvsX RecA-like protein [Prochlorococcus phage P-HM2]
          Length = 338

 Score = 96.1 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 58/298 (19%), Positives = 123/298 (41%), Gaps = 25/298 (8%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG----GFPKGRIVE 71
           L+  + +I   Y       L S+G + +    + +GS   + AL  G    G    +I  
Sbjct: 6   LKNIVKEIDNDYA-----GLLSEGGVGDIESYIDTGSYIFN-ALVSGSIHKGIASNKITA 59

Query: 72  IYGPESSGKTTLALHTIAQS--QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           + G   +GKT   L  +             + ++E A+      + G+D   +++    T
Sbjct: 60  LAGESGTGKTFFCLGVVQSYLRDNPDAGVVYFESEAAVTKQMVDERGIDGTRMILVPVTT 119

Query: 130 GEQ----ALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEGDMG--ESLPGMQARLM 179
            ++    A++I D  +     D    + V+DS+  L+   E+       ++    +A+++
Sbjct: 120 VQEFRTNAIQILDKYLEQKTEDRKPMMFVLDSLGMLSTSKELADSAEGKDTRDMTRAQVV 179

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
               R LT  + ++   L+  N     +G  +   +   GG+ LK+ +S  + + +    
Sbjct: 180 KAIFRILTLKLGKANVPLLVTNHTYDVVGA-YVPTKEMGGGSGLKYAASTIIYLSKK-KE 237

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG-EGISFFGELIDLGVKASIVDKSG 296
           KD   + GN  + K  K+++      VE  + +   G+  +  L++LG K  + ++ G
Sbjct: 238 KDGKDVIGNIIKAKAAKSRLTKENSIVETRLYFDARGLDKYYGLLELGEKYGVFERKG 295


>gi|327311698|ref|YP_004338595.1| DNA repair and recombination protein RadA [Thermoproteus uzoniensis
           768-20]
 gi|326948177|gb|AEA13283.1| DNA repair and recombination protein RadA [Thermoproteus uzoniensis
           768-20]
          Length = 337

 Score = 96.1 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 94/244 (38%), Gaps = 32/244 (13%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGGT--- 97
            I+ +S+G   LD  L  GG   G + E+ G   +GKT          Q     GG    
Sbjct: 102 NIKRISTGVRSLDELLN-GGVETGAVTEVAGEFGAGKTQFCHQLAVMVQLPEDRGGLNAK 160

Query: 98  CAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQAL---EITDMLVRSGAV 146
             ++D E+        ++           LKN+  ++  + +  +   E    +++   V
Sbjct: 161 AIYIDTENTFRPERITQMARARGLDPDQALKNIYYARAYSSDHQMILVEQARRIIKQDNV 220

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++V+DS+ A   RAE  G         + + +++ +  L          +V  NQ+  +
Sbjct: 221 KLLVVDSIVAHF-RAEFPGREN---LAERQQKLNKHIADLLKIADAYDVAVVVTNQVMAQ 276

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
             V FG+P    GGN L   ++ R+ +R+               R+  + +    P ++ 
Sbjct: 277 PDVFFGNPLRPAGGNVLAHGATYRIWLRKSKE----------NIRIAKIFDSPYHPEREA 326

Query: 267 EFDI 270
            F I
Sbjct: 327 TFKI 330


>gi|327314979|emb|CCA61103.1| recombinase A [Rhodopseudomonas sp. JA576]
          Length = 112

 Score = 96.1 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 82/112 (73%), Positives = 104/112 (92%)

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD +YARKLGV++ +LLISQPD GEQALEI D LVRSGA+D++++DSVAAL PRAE
Sbjct: 1   AEHALDPVYARKLGVNVDDLLISQPDHGEQALEIADTLVRSGAIDVLIVDSVAALVPRAE 60

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           +EG+MG++LPG+QARLMSQALRKLT+SI++S  +++FINQ+RMKIGVM+GSP
Sbjct: 61  LEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVMYGSP 112


>gi|304373591|ref|YP_003858336.1| UvsX RecA-like recombination protein [Enterobacteria phage RB16]
 gi|299829547|gb|ADJ55340.1| UvsX RecA-like recombination protein [Enterobacteria phage RB16]
          Length = 381

 Score = 96.1 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 52/267 (19%), Positives = 100/267 (37%), Gaps = 14/267 (5%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTI--AQS 91
           S+  +F  I    +    L++ L     GG   G +  I GP    K+ L L  +     
Sbjct: 23  SESDVFNNITKTRTRVPILNLVLSGAFDGGLTSG-LTLIAGPSKHFKSNLGLVAVAAYLK 81

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR---SGAVDI 148
                 C F D+E  +   Y + +GVD   ++ ++  T EQ        +     G   I
Sbjct: 82  ANEDAVCLFYDSEKGVTKSYLKSMGVDPDRVVYTRITTVEQLRNDVVSQLDALERGDKVI 141

Query: 149 IVIDSVAALTPRAEIEGDMGES--LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           I +DSV     + E++  + ++      +A+ +    R +T  ++     +V I      
Sbjct: 142 IFVDSVGNTASKKELKDALEDNDKQDMTRAKALKGMFRMVTPYLADIDIPMVCICHTY-D 200

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
              M+     + G   +    +  +       +K+   + G    + V K++      + 
Sbjct: 201 TQEMYSKKVISGGTGLMYSADTAII--LGKQQVKEGTEVVGYDFIMNVEKSRFVKEKSKF 258

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVD 293
              + Y  GIS F  L+DL ++ + V 
Sbjct: 259 PLHVTYEGGISMFSGLLDLAMEMNFVQ 285


>gi|313585638|gb|ADR70961.1| RecA [Helicobacter pylori]
 gi|313585642|gb|ADR70963.1| RecA [Helicobacter pylori]
 gi|313585644|gb|ADR70964.1| RecA [Helicobacter pylori]
 gi|313585646|gb|ADR70965.1| RecA [Helicobacter pylori]
 gi|313585648|gb|ADR70966.1| RecA [Helicobacter pylori]
 gi|313585650|gb|ADR70967.1| RecA [Helicobacter pylori]
 gi|313585652|gb|ADR70968.1| RecA [Helicobacter pylori]
          Length = 109

 Score = 95.7 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 77/109 (70%), Positives = 94/109 (86%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL+LH IA+ QK GG CAF+DAEHALD  YA++LGVD +NLL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
            + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK
Sbjct: 61  LETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRK 109


>gi|87122442|ref|ZP_01078322.1| hypothetical protein MED121_19936 [Marinomonas sp. MED121]
 gi|86162235|gb|EAQ63520.1| hypothetical protein MED121_19936 [Marinomonas sp. MED121]
          Length = 67

 Score = 95.7 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 41/62 (66%), Positives = 48/62 (77%), Gaps = 2/62 (3%)

Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
          K KAL+AALSQI+R +GKGAIM++G    +   IE VS+GSLGLDIALG GG P GRI E
Sbjct: 8  KKKALDAALSQIERQFGKGAIMKMGEGAKL--DIETVSTGSLGLDIALGAGGLPFGRICE 65

Query: 72 IY 73
          IY
Sbjct: 66 IY 67


>gi|212224798|ref|YP_002308034.1| DNA repair and recombination protein RadA [Thermococcus onnurineus
           NA1]
 gi|212009755|gb|ACJ17137.1| radA DNA repair protein rad51 [Thermococcus onnurineus NA1]
          Length = 353

 Score = 95.7 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 97/260 (37%), Gaps = 33/260 (12%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G  M+          I  +S+GS  LD  +G GG     I E++G   SGKT LA     
Sbjct: 99  GTFMRADEYMEKRRTIGKISTGSKSLDKLVG-GGIETQAITEVFGEFGSGKTQLAHTLAV 157

Query: 90  QSQ------KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQAL- 134
             Q         G+  ++D E+       R++  +        LKN+ +++       + 
Sbjct: 158 MVQLPPEEGGLQGSVIWIDTENTFRPERIRQIAENRGLDPEEVLKNIYVARAFNSNHQML 217

Query: 135 -------EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
                   I +       V +IVIDS+ A   R+E  G         + + +++ L  L 
Sbjct: 218 LVERAEEIIKEKAETERPVKLIVIDSLMAHF-RSEYVGR---GTLAERQQKLAKHLADLH 273

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK------D 241
                    +   NQ++ K    FG P    GG+ L   +++R+ +R+  + K      D
Sbjct: 274 RIADLYDIAVFVTNQVQAKPDAFFGDPTRPVGGHILAHSATLRIYLRKGKAGKRVARLID 333

Query: 242 KDSITGNQTRVKVVKNKMAS 261
              +   +   ++    +  
Sbjct: 334 SPHLPEGEAIFRITDKGVED 353


>gi|126465874|ref|YP_001040983.1| DNA repair and recombination protein RadA [Staphylothermus marinus
           F1]
 gi|126014697|gb|ABN70075.1| DNA repair and recombination protein RadA [Staphylothermus marinus
           F1]
          Length = 319

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 94/244 (38%), Gaps = 28/244 (11%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGGT--- 97
            +  +++GS  LD  LG GG     I E +G   +GKT +        Q   + GG    
Sbjct: 81  SVRKITTGSKNLDDLLG-GGIETKTITEFFGEYGTGKTQICHQLSVNVQLPPERGGLSGR 139

Query: 98  CAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEI---TDMLVRSGAV 146
             ++D E           AR LG+D    ++N+   +    +  + I       V    V
Sbjct: 140 AVYIDTEGTFRWERIEAMARGLGLDPDEVMENIYYQRAYNSDHQIAIVEELFSFVPEHNV 199

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++VIDSV +   RAE  G         + + +++ L +L          +V  NQ+  +
Sbjct: 200 KLVVIDSVTSHF-RAEYPGREN---LAARQQKLNKHLHQLVRLAEAYNIAVVVTNQVMAR 255

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK------DKDSITGNQTRVKVVKNKMA 260
             V +G P    GG+ L     VR+ +R+    K      D   +   +    +V   + 
Sbjct: 256 PDVFYGDPTQAVGGHVLAHTPGVRVQLRKAKGHKRIARVVDAPHLPEGEAIFVIVDEGIR 315

Query: 261 SPFK 264
            P +
Sbjct: 316 DPEE 319


>gi|146417037|ref|XP_001484488.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 333

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 95/248 (38%), Gaps = 32/248 (12%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            V++GS  LD  LG GG   G I E++G   +GK+ L        Q         G C +
Sbjct: 90  CVTTGSKQLDTLLG-GGIETGSITEVFGEFRTGKSQLCHTLAVTCQLPIDMGGGEGKCLY 148

Query: 101 VDAEHALDSIY----ARKLGVDLKNLLIS-------QPDTGEQALEITDMLVRSGAVDII 149
           +D E     +     A++ G++  + L +         +   Q L +   ++      ++
Sbjct: 149 IDTEGTFRPVRLVLIAQRYGLNPDDCLDNVAYARAYNAEHQFQLLNMAAQMMAESRFSLL 208

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DS+ +L          G      +   +++ +R L          +V  NQ+  ++  
Sbjct: 209 IVDSIMSLYR----TDYSGRGELSARQAHVAKYMRTLQRLADEFGIAVVITNQVVAQVDG 264

Query: 209 ---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
              +    P+   GGN +   S+ RL  R      RV  + D   +  ++    + ++ +
Sbjct: 265 GASMFNPDPKKPIGGNIIAHSSTTRLSFRKGRAEQRVCKVYDSPCLPESECVFAIYEDGI 324

Query: 260 ASPFKQVE 267
             P +  E
Sbjct: 325 GDPREDEE 332


>gi|18978298|ref|NP_579655.1| DNA repair and recombination protein RadA [Pyrococcus furiosus DSM
           3638]
 gi|13878669|sp|O74036|RADA_PYRFU RecName: Full=DNA repair and recombination protein radA
 gi|3560537|gb|AAC34998.1| recombinase [Pyrococcus furiosus DSM 3638]
 gi|18894122|gb|AAL82050.1| recombinase, radA [Pyrococcus furiosus DSM 3638]
          Length = 349

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 94/230 (40%), Gaps = 27/230 (11%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G  M+          I  +S+GS  LD  LG GG     I E++G   SGKT LA     
Sbjct: 95  GTFMRADEYLKKRATIGRISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLAHTLAV 153

Query: 90  QSQ------KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQAL- 134
             Q         G+  ++D E+       R++  +        LK++ +++       + 
Sbjct: 154 MVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQML 213

Query: 135 -------EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
                  +I ++L     V ++++DS+ +   R+E    +G      + + +++ L  L 
Sbjct: 214 LVQQAEDKIKELLNTDRPVKLLIVDSLTSHF-RSEY---IGRGALAERQQKLAKHLADLH 269

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
              +     +   NQ++ +    FG P    GG+ L   +++R+ +R+  
Sbjct: 270 RLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGK 319


>gi|190347494|gb|EDK39771.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 333

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 95/248 (38%), Gaps = 32/248 (12%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            V++GS  LD  LG GG   G I E++G   +GK+ L        Q         G C +
Sbjct: 90  CVTTGSKQLDTLLG-GGIETGSITEVFGEFRTGKSQLCHTLAVTCQLPIDMGGGEGKCLY 148

Query: 101 VDAEHALDSIY----ARKLGVDLKNLLIS-------QPDTGEQALEITDMLVRSGAVDII 149
           +D E     +     A++ G++  + L +         +   Q L +   ++      ++
Sbjct: 149 IDTEGTFRPVRLVSIAQRYGLNPDDCLDNVAYARAYNAEHQFQLLNMAAQMMAESRFSLL 208

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DS+ +L          G      +   +++ +R L          +V  NQ+  ++  
Sbjct: 209 IVDSIMSLYR----TDYSGRGELSARQAHVAKYMRTLQRLADEFGIAVVITNQVVAQVDG 264

Query: 209 ---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
              +    P+   GGN +   S+ RL  R      RV  + D   +  ++    + ++ +
Sbjct: 265 GASMFNPDPKKPIGGNIIAHSSTTRLSFRKGRAEQRVCKVYDSPCLPESECVFAIYEDGI 324

Query: 260 ASPFKQVE 267
             P +  E
Sbjct: 325 GDPREDEE 332


>gi|91078458|ref|XP_967492.1| PREDICTED: similar to Dmc1 homolog [Tribolium castaneum]
 gi|270004852|gb|EFA01300.1| DMC1/LIM15 [Tribolium castaneum]
          Length = 356

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 61/299 (20%), Positives = 110/299 (36%), Gaps = 42/299 (14%)

Query: 6   EMNIVDKSKALEA----ALSQIQRVYGKGAI----MQLGSQGSIFEGIEVVSSGSLGLDI 57
           +M   DK  AL++     +S+IQ + G  +     M         + +  +S+GS  LD 
Sbjct: 63  QMTTTDKLLALKSFNPSKVSKIQEICGNISFSNRFMTAFEVSEACKQVFKISTGSANLDK 122

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-----KTGGTCAFVDAEHALDSIYA 112
            LG GG     I +++G   SGKT +A      +Q      +GG   F+D E +      
Sbjct: 123 LLG-GGVESMSITQVFGEAGSGKTQIAHTLCVTTQIPTEDYSGGKVMFIDTERSFRPNRI 181

Query: 113 RKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGAVD-----IIVIDSVAALTP 159
           R++           L+N+L  +    E   +I   +      D     ++++DS+ AL  
Sbjct: 182 RQIARRFHLSEDSVLQNILYIRAYNSEHQYQILKNVAVKFHEDTGVFKLLIVDSIIALFR 241

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG-----SP 214
                  MG  +   + + +++ +  L          +   NQ+   +   F        
Sbjct: 242 ----NDFMGRGVLLNRQQKLAETMSLLKKISEEYNVAVFITNQVTTSMNNKFPLLTIGDD 297

Query: 215 ETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
               GGN L   S+ R+ +R      R+  I D   +   +    +    +  P    E
Sbjct: 298 VKPVGGNILAHSSTTRVALRKLTGNVRIAKIHDSPELAEQEEAFTITNGGVQDPILDAE 356


>gi|294656166|ref|XP_458414.2| DEHA2C16698p [Debaryomyces hansenii CBS767]
 gi|199430910|emb|CAG86496.2| DEHA2C16698p [Debaryomyces hansenii]
          Length = 350

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 94/246 (38%), Gaps = 32/246 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  LG GG   G I E++G   +GK+ L        Q         G C +
Sbjct: 106 CITTGSKQLDTLLG-GGIETGSITEVFGEFRTGKSQLCHTLAVTCQLPIDMGGGEGKCLY 164

Query: 101 VDAEHALDSIY----ARKLGVDLKNLLIS-------QPDTGEQALEITDMLVRSGAVDII 149
           +D E     +     A++ G++ ++ L +         +   Q L     ++       +
Sbjct: 165 IDTEGTFRPVRLVSIAQRYGLNPEDCLDNVAYARAYNAEHQFQLLNHAAQMMSESRFSCL 224

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DS+ +L          G +    +   +++ +R L          +V  NQ+  ++  
Sbjct: 225 IVDSIMSLYR----TDYSGRAELSARQTHVAKYMRTLQRLADEFGIAVVITNQVVAQVDG 280

Query: 209 ---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
              +    P+   GGN +   S+ RL  +      R+  I D   +  ++    + ++ +
Sbjct: 281 ASAMFNPDPKKPIGGNIIAHSSTTRLSFKKGRAEQRICKIYDSPCLPESECVFAIYEDGI 340

Query: 260 ASPFKQ 265
             P  +
Sbjct: 341 GDPKTE 346


>gi|119719925|ref|YP_920420.1| DNA repair and recombination protein RadA [Thermofilum pendens Hrk
           5]
 gi|119525045|gb|ABL78417.1| DNA repair and recombination protein RadA [Thermofilum pendens Hrk
           5]
          Length = 358

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 90/245 (36%), Gaps = 28/245 (11%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGG 96
              + IE +S+G   LD  L  GG   G I E  G   +GKT +        Q     GG
Sbjct: 118 EKRKNIEYISTGVRSLDDLL-EGGIEVGSITEFIGEFGAGKTQICHQLSVMVQLPKDKGG 176

Query: 97  T---CAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVR 142
                 +VD E         ++           L+N++ ++    +  + +       + 
Sbjct: 177 LNARALYVDTEGTFRPERIVQIARARGLDPEKTLENIIYARAYNSDHQMLLIDEAKKYIE 236

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
              + +I++DS+     RAE  G         + + +++ + +L    S     +V  NQ
Sbjct: 237 KYNIRLIIVDSLINHF-RAEYPGREN---LASRQQKLNKHISQLHRLASLYNLAVVVTNQ 292

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVK 256
           +     + FG+P    GGN +    + R+ +R      R+  I D       +    + +
Sbjct: 293 VMASPDIFFGNPLKPAGGNIMAHGCTYRIWLRKAKEGKRIARIIDSPKHAEKEVAFAITE 352

Query: 257 NKMAS 261
           + +  
Sbjct: 353 DGVTD 357


>gi|18181989|dbj|BAB83902.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
          Length = 319

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 58/284 (20%), Positives = 107/284 (37%), Gaps = 36/284 (12%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
           + I+   K ++AA   +   + K A             I+ +++GS  LD  LG GG   
Sbjct: 50  IPILTAQKTVDAAREALNIDF-KTAY----DLKIESMNIKKITTGSRNLDELLG-GGIET 103

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKLGVDL- 119
             I E++G   SGKT +        Q         G   ++D E         ++   + 
Sbjct: 104 KTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKAVYIDTEGTFRWERIEQMARGVG 163

Query: 120 -------KNLLISQPDTGEQALEITDM---LVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
                  KN+   +       + I D    +V++  + ++V+DSV +   R E  G    
Sbjct: 164 LDPDEVMKNIYWIRAINSHHQIAIVDKLFTMVKNDNIKLVVVDSVTSHF-RVEFPGREN- 221

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
               M+ +L+++ L +L          +V  NQ+  +  V +G P    GG+ L     V
Sbjct: 222 --LAMRQQLLNRHLHQLMRLADIFNVAVVITNQVMARPDVFYGDPTQAVGGHVLGHAPGV 279

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           R+ +++           G++   +VV        + V     +G
Sbjct: 280 RVYLKKSR---------GDKRIARVVDAPHLPEGETVFAITEWG 314


>gi|15920489|ref|NP_376158.1| DNA repair and recombination protein RadA [Sulfolobus tokodaii str.
           7]
 gi|20139589|sp|Q975Y1|RADA_SULTO RecName: Full=DNA repair and recombination protein radA
 gi|15621272|dbj|BAB65267.1| 324aa long hypothetical DNA repair protein radA [Sulfolobus
           tokodaii str. 7]
          Length = 324

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 83/240 (34%), Gaps = 30/240 (12%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGT 97
             + +++GS  LD  LG GG     + E++G   SGKT L        Q        GG 
Sbjct: 85  NTKKITTGSQALDGLLG-GGIETRTMTELFGEFGSGKTQLCHQLSVNVQLPLEKGGLGGK 143

Query: 98  CAFVDAEHALDSIYARKLGVDL--------KNLLISQPDTGEQALEI---TDMLVRSGAV 146
             ++D E          +   +         N+   +    +  + I      L+     
Sbjct: 144 AVYIDTEGTFRWERIEAMSKAIGLEPDSAMNNIYYMRAINSDHQMAIVDDLQELISKDPA 203

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
             +VI        RAE  G        ++ + +++ L +L          ++  NQ+  +
Sbjct: 204 IKLVIVDSVTSHFRAEFPGREN---LAVRQQKLNKHLHQLVRLAEMYDLAVIITNQVMAR 260

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
             + +G P    GG+ L     +R+ +++           GN+   ++V        + V
Sbjct: 261 PDMFYGDPTVAVGGHTLYHVPGIRVQLKKSR---------GNKRIARIVDAPHLPEGEVV 311


>gi|325957924|ref|YP_004289390.1| DNA repair and recombination protein radA [Methanobacterium sp.
           AL-21]
 gi|325329356|gb|ADZ08418.1| DNA repair and recombination protein radA [Methanobacterium sp.
           AL-21]
          Length = 311

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 58/285 (20%), Positives = 113/285 (39%), Gaps = 34/285 (11%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +  + E+      K +EAA    Q  +     M         + +  V++GS GLD  +G
Sbjct: 37  LSVKAEIGEGVAEKVIEAARKSEQIDF--ETAM---DVMERRKDVGRVTTGSTGLDELIG 91

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARK 114
            GG     I E++G   SGK+ ++       Q        GG C F+D E+       ++
Sbjct: 92  -GGIETQSITEVFGEFGSGKSQISHELAVTVQLPPEKGGLGGQCVFIDTENTFRPERIKQ 150

Query: 115 LGV--------DLKNLLISQPDTGEQALEITDM----LVRSGAVDIIVIDSVAALTPRAE 162
           +           L N+ I++       + + D     +     + ++++DS+ A   RAE
Sbjct: 151 IAEGFELDVEEVLTNIHIARAFNSSHQILMADKVNELIQSGANIKLVIVDSLTAHF-RAE 209

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
             G         + + ++Q L  L++  +     +   NQ++ K    FGSP    GG+ 
Sbjct: 210 YVGR---ESLATRQQKLNQHLHTLSNIANTYNVAVFVTNQVQSKPDAFFGSPTKAIGGHV 266

Query: 223 LKFYSSVRLDI------RRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           L   ++ R+ +      +R+  + D   +   +   KV+   ++ 
Sbjct: 267 LGHAATYRIWLKKGLAGKRIARLVDSPHLPEGEAVFKVITEGISD 311


>gi|209875975|ref|XP_002139430.1| Rad51 protein [Cryptosporidium muris RN66]
 gi|209555036|gb|EEA05081.1| Rad51 protein, putative [Cryptosporidium muris RN66]
          Length = 351

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 91/252 (36%), Gaps = 31/252 (12%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----- 94
                +   ++GS  LD  L  GG   G I EI+G   +GKT L        Q       
Sbjct: 103 QARTNLIRFTTGSKQLDRLL-QGGIETGNITEIFGEFRTGKTQLCHTLAVTCQLPVEHNG 161

Query: 95  -GGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITD---MLVR 142
             G C ++D E         ++           L N+  ++    E  +++      ++ 
Sbjct: 162 GEGKCLWIDTEGTFRPERIVQIAERFSLNASDCLDNIAYARGFNTEHQMDLLQSAVAMMS 221

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                ++++DS  AL  R+E  G         +   + Q LR L          ++  NQ
Sbjct: 222 ESRFALMIVDSATALY-RSEYNGR---GELASRQSHLGQFLRGLQKIADTFGVAVIITNQ 277

Query: 203 MRMKIGVM---FGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVK 253
           +  K+  M   F + +   GGN +   S  RL ++      R+  I D  ++    T   
Sbjct: 278 VMSKVDAMAAIFQNDKVPIGGNIIAHASQTRLYLKKGRAETRICKIYDSPNLPEGDTAFA 337

Query: 254 VVKNKMASPFKQ 265
           + +  +  P  +
Sbjct: 338 ITEGGINDPNDE 349


>gi|123408472|ref|XP_001303202.1| DNA repair protein RAD51 homolog [Trichomonas vaginalis G3]
 gi|84784038|gb|ABC61984.1| Rad51-like protein A [Trichomonas vaginalis]
 gi|121884563|gb|EAX90272.1| DNA repair protein RAD51 homolog, putative [Trichomonas vaginalis
           G3]
          Length = 329

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 92/251 (36%), Gaps = 31/251 (12%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-- 94
               I + +  +++GS  LD  LG GG   G + EI+G   +GKT L        Q    
Sbjct: 82  DYNQIRKEMVYLTTGSTELDKLLG-GGIETGSVTEIFGEFRTGKTQLCHTLAVTCQLPIE 140

Query: 95  ----GGTCAFVDAEHALDSIYA----RKLGVDLKNLLISQPD-------TGEQALEITDM 139
                G C ++D E            ++ G+D  +++ +             Q L     
Sbjct: 141 NGGGQGKCLWIDTEGTFRPERIIPIAQRFGLDPDDVMDNIAYARAYNSDHQSQLLVTASA 200

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           ++      ++++DS   L  R +  G    S   M    + Q LR +          +V 
Sbjct: 201 MMAEAHYALLIVDSSTNLY-RTDYSGRGELSARQMH---LGQFLRNIQRLADEYGIAVVI 256

Query: 200 INQMRMKIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQT 250
            NQ+  ++    +    P+   GGN +   S  RL +R      RV  I D  S+  N+ 
Sbjct: 257 TNQVVAQVDGAAMFVSDPKKPIGGNIMAHASQTRLSLRKGRGETRVCKIYDSPSLPENEA 316

Query: 251 RVKVVKNKMAS 261
             ++    +  
Sbjct: 317 TFQITNGGITD 327


>gi|225006878|dbj|BAH29215.1| recombinase [Clostridium perfringens]
 gi|225006880|dbj|BAH29216.1| recombinase [Clostridium perfringens]
 gi|225006882|dbj|BAH29217.1| recombinase [Clostridium perfringens]
 gi|225006884|dbj|BAH29218.1| recombinase [Clostridium perfringens]
 gi|225006886|dbj|BAH29219.1| recombinase [Clostridium perfringens]
 gi|225006888|dbj|BAH29220.1| recombinase [Clostridium perfringens]
 gi|225006890|dbj|BAH29221.1| recombinase [Clostridium perfringens]
 gi|225006892|dbj|BAH29222.1| recombinase [Clostridium perfringens]
 gi|225006894|dbj|BAH29223.1| recombinase [Clostridium perfringens]
 gi|225006896|dbj|BAH29224.1| recombinase [Clostridium perfringens]
 gi|225006898|dbj|BAH29225.1| recombinase [Clostridium perfringens]
 gi|225006900|dbj|BAH29226.1| recombinase [Clostridium perfringens]
 gi|225006902|dbj|BAH29227.1| recombinase [Clostridium perfringens]
 gi|225006904|dbj|BAH29228.1| recombinase [Clostridium perfringens]
 gi|225006906|dbj|BAH29229.1| recombinase [Clostridium perfringens]
 gi|225006908|dbj|BAH29230.1| recombinase [Clostridium perfringens]
 gi|225006910|dbj|BAH29231.1| recombinase [Clostridium perfringens]
 gi|225006912|dbj|BAH29232.1| recombinase [Clostridium perfringens]
 gi|225006914|dbj|BAH29233.1| recombinase [Clostridium perfringens]
 gi|225006916|dbj|BAH29234.1| recombinase [Clostridium perfringens]
 gi|225006918|dbj|BAH29235.1| recombinase [Clostridium perfringens]
 gi|225006920|dbj|BAH29236.1| recombinase [Clostridium perfringens]
 gi|225006922|dbj|BAH29237.1| recombinase [Clostridium perfringens]
 gi|225006924|dbj|BAH29238.1| recombinase [Clostridium perfringens]
 gi|225006926|dbj|BAH29239.1| recombinase [Clostridium perfringens]
 gi|225006928|dbj|BAH29240.1| recombinase [Clostridium perfringens]
 gi|225006930|dbj|BAH29241.1| recombinase [Clostridium perfringens]
 gi|225006932|dbj|BAH29242.1| recombinase [Clostridium perfringens]
 gi|225006934|dbj|BAH29243.1| recombinase [Clostridium perfringens]
 gi|225006936|dbj|BAH29244.1| recombinase [Clostridium perfringens]
 gi|225006938|dbj|BAH29245.1| recombinase [Clostridium perfringens]
 gi|225006940|dbj|BAH29246.1| recombinase [Clostridium perfringens]
 gi|225006942|dbj|BAH29247.1| recombinase [Clostridium perfringens]
 gi|225006944|dbj|BAH29248.1| recombinase [Clostridium perfringens]
 gi|225006946|dbj|BAH29249.1| recombinase [Clostridium perfringens]
 gi|225006948|dbj|BAH29250.1| recombinase [Clostridium perfringens]
 gi|225006950|dbj|BAH29251.1| recombinase [Clostridium perfringens]
 gi|225006952|dbj|BAH29252.1| recombinase [Clostridium perfringens]
 gi|225006954|dbj|BAH29253.1| recombinase [Clostridium perfringens]
 gi|225006956|dbj|BAH29254.1| recombinase [Clostridium perfringens]
 gi|225006958|dbj|BAH29255.1| recombinase [Clostridium perfringens]
 gi|225006960|dbj|BAH29256.1| recombinase [Clostridium perfringens]
 gi|225006962|dbj|BAH29257.1| recombinase [Clostridium perfringens]
 gi|225006964|dbj|BAH29258.1| recombinase [Clostridium perfringens]
 gi|225006966|dbj|BAH29259.1| recombinase [Clostridium perfringens]
 gi|225006968|dbj|BAH29260.1| recombinase [Clostridium perfringens]
 gi|225006970|dbj|BAH29261.1| recombinase [Clostridium perfringens]
 gi|225006972|dbj|BAH29262.1| recombinase [Clostridium perfringens]
 gi|225006974|dbj|BAH29263.1| recombinase [Clostridium perfringens]
 gi|225006976|dbj|BAH29264.1| recombinase [Clostridium perfringens]
 gi|225006978|dbj|BAH29265.1| recombinase [Clostridium perfringens]
 gi|225006980|dbj|BAH29266.1| recombinase [Clostridium perfringens]
 gi|225006982|dbj|BAH29267.1| recombinase [Clostridium perfringens]
 gi|225006984|dbj|BAH29268.1| recombinase [Clostridium perfringens]
 gi|225006986|dbj|BAH29269.1| recombinase [Clostridium perfringens]
 gi|225006988|dbj|BAH29270.1| recombinase [Clostridium perfringens]
 gi|225006990|dbj|BAH29271.1| recombinase [Clostridium perfringens]
 gi|225006992|dbj|BAH29272.1| recombinase [Clostridium perfringens]
 gi|225006994|dbj|BAH29273.1| recombinase [Clostridium perfringens]
 gi|225006996|dbj|BAH29274.1| recombinase [Clostridium perfringens]
 gi|225006998|dbj|BAH29275.1| recombinase [Clostridium perfringens]
 gi|225007000|dbj|BAH29276.1| recombinase [Clostridium perfringens]
 gi|225007002|dbj|BAH29277.1| recombinase [Clostridium perfringens]
 gi|225007004|dbj|BAH29278.1| recombinase [Clostridium perfringens]
 gi|225007006|dbj|BAH29279.1| recombinase [Clostridium perfringens]
 gi|225007008|dbj|BAH29280.1| recombinase [Clostridium perfringens]
 gi|225007010|dbj|BAH29281.1| recombinase [Clostridium perfringens]
 gi|225007012|dbj|BAH29282.1| recombinase [Clostridium perfringens]
 gi|225007014|dbj|BAH29283.1| recombinase [Clostridium perfringens]
 gi|225007016|dbj|BAH29284.1| recombinase [Clostridium perfringens]
 gi|225007018|dbj|BAH29285.1| recombinase [Clostridium perfringens]
 gi|225007020|dbj|BAH29286.1| recombinase [Clostridium perfringens]
 gi|225007022|dbj|BAH29287.1| recombinase [Clostridium perfringens]
 gi|225007024|dbj|BAH29288.1| recombinase [Clostridium perfringens]
 gi|225007026|dbj|BAH29289.1| recombinase [Clostridium perfringens]
 gi|225007028|dbj|BAH29290.1| recombinase [Clostridium perfringens]
 gi|225007030|dbj|BAH29291.1| recombinase [Clostridium perfringens]
 gi|225007032|dbj|BAH29292.1| recombinase [Clostridium perfringens]
 gi|225007034|dbj|BAH29293.1| recombinase [Clostridium perfringens]
          Length = 96

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 67/96 (69%), Positives = 84/96 (87%)

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           S  G+QARLMSQALRKLT +I++S C+++FINQ+R K+G+MFG+PETT GG ALKFY+SV
Sbjct: 1   SHVGLQARLMSQALRKLTGTINKSNCVVIFINQLREKVGIMFGNPETTPGGRALKFYASV 60

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           R+DIRR+ SIK  D ITGN+TRVK+VKNK+A PFKQ
Sbjct: 61  RMDIRRIDSIKQGDGITGNRTRVKIVKNKVAPPFKQ 96


>gi|183397237|gb|ACC62173.1| Dmc1 [Penaeus monodon]
          Length = 341

 Score = 94.5 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 91/244 (37%), Gaps = 34/244 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-------KTGGTCA 99
            VS+GS  LD  LG GG     I E++G   +GKT ++      +Q        +GG   
Sbjct: 100 RVSTGSAELDALLG-GGIESMAITEVFGEFRTGKTQISHTLCVTAQIPNEAGTYSGGKVI 158

Query: 100 FVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-----V 146
           F+D E+       R +           L N+L ++  T E  LEI D +           
Sbjct: 159 FIDTENTFRPDRLRPIADRYNLEQDAVLDNVLYTRAFTSEHQLEILDHVAAQFHEEPGIF 218

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++++DSV AL          G      + + ++Q + +L          +   NQM   
Sbjct: 219 KLLIVDSVMALFR----VDFSGRGELADRQQKLAQYMSRLQKISEEYNVSVFITNQMTAD 274

Query: 207 IGVMFG---SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKN 257
            G        P+   GG+ L    + R+ +R      R+  I D   +  N+    +   
Sbjct: 275 PGAAMSFQADPKKPIGGHILAHAPTTRVCLRKGRGETRIAKIYDSPELPENECTFAITAG 334

Query: 258 KMAS 261
            +A 
Sbjct: 335 GIAD 338


>gi|67594825|ref|XP_665902.1| Rad51 [Cryptosporidium hominis TU502]
 gi|54656768|gb|EAL35671.1| Rad51 [Cryptosporidium hominis]
          Length = 347

 Score = 94.5 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 90/252 (35%), Gaps = 31/252 (12%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----- 94
                +   ++GS  LD  L  GG   G I EI+G   +GKT L        Q       
Sbjct: 100 EARTNLIKFTTGSSQLDRLL-QGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPVEHKG 158

Query: 95  -GGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITD---MLVR 142
             G C ++D E         ++           L N+  ++    E  +++      ++ 
Sbjct: 159 GEGKCLWIDTEGTFRPERIVQIADRFNLNASDCLDNIAYARGFNTEHQMDLLQSAVAMMT 218

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                ++++DS  AL  R+E  G         +   + Q LR L          +V  NQ
Sbjct: 219 ESRFALMIVDSATALY-RSEYNGR---GELATRQSHLGQFLRALQKIADTFGVAVVITNQ 274

Query: 203 MRMKIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVK 253
           +  K+     MF + +   GGN +   S  RL ++      R+  I D  ++        
Sbjct: 275 VMSKVDAMAAMFQNDKVPIGGNIIAHASQTRLFLKKGRGETRICKIYDSPNLPEGDATFS 334

Query: 254 VVKNKMASPFKQ 265
           + +  +  P  +
Sbjct: 335 ITEGGINDPKDE 346


>gi|66357650|ref|XP_626003.1| Rad51 [Cryptosporidium parvum Iowa II]
 gi|46227223|gb|EAK88173.1| Rad51 [Cryptosporidium parvum Iowa II]
          Length = 347

 Score = 94.5 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 90/252 (35%), Gaps = 31/252 (12%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----- 94
                +   ++GS  LD  L  GG   G I EI+G   +GKT L        Q       
Sbjct: 100 EARTNLIKFTTGSSQLDRLL-QGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPVEHKG 158

Query: 95  -GGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITD---MLVR 142
             G C ++D E         ++           L N+  ++    E  +++      ++ 
Sbjct: 159 GEGKCLWIDTEGTFRPERIVQIADRFNLNASDCLDNIAYARGFNTEHQMDLLQSAVAMMT 218

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                ++++DS  AL  R+E  G         +   + Q LR L          +V  NQ
Sbjct: 219 ESRFALMIVDSATALY-RSEYNGR---GELATRQSHLGQFLRALQKIADTFGVAVVITNQ 274

Query: 203 MRMKIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVK 253
           +  K+     MF + +   GGN +   S  RL ++      R+  I D  ++        
Sbjct: 275 VMSKVDAMAAMFQNDKVPIGGNIIAHASQTRLFLKKGRGETRICKIYDSPNLPEGDATFS 334

Query: 254 VVKNKMASPFKQ 265
           + +  +  P  +
Sbjct: 335 ITEGGINDPKDE 346


>gi|313585640|gb|ADR70962.1| RecA [Helicobacter pylori]
          Length = 109

 Score = 94.1 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 76/109 (69%), Positives = 93/109 (85%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
           SSGKTTL+LH IA+ QK  G CAF+DAEHALD  YA++LGVD +NLL+SQPDTGEQALEI
Sbjct: 1   SSGKTTLSLHIIAECQKNDGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEI 60

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
            + + RSG +D++V+DSVAALTP+AEI+GDMG+   G+QARLMS ALRK
Sbjct: 61  LETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRK 109


>gi|32250967|gb|AAP74362.1| DNA repair protein Rad51 [Pichia angusta]
          Length = 369

 Score = 94.1 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 100/247 (40%), Gaps = 31/247 (12%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  LG GG   G I E++G   +GK+ L        Q         G C +
Sbjct: 123 CLTTGSKQLDTLLG-GGIETGAITEVFGEFRTGKSQLCHTLAVTCQLPIDNGGGEGKCLY 181

Query: 101 VDAEHALDSIY----ARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDII 149
           +D E     I     AR+ G+D    L N+  ++    +  L++      ++      ++
Sbjct: 182 IDTEGTFRPIRLVAIARRFGLDENETLDNVAYARAYNADHQLQLLHQAASMMTESRFSLL 241

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DS+ AL  R +  G    S   M    +++ +R L          +V  NQ+  ++  
Sbjct: 242 IVDSIMALY-RTDYSGRGELSARQMH---VAKFMRTLQRLADEFGIAVVITNQVVAQVDG 297

Query: 209 --VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMA 260
             +    P+   GGN +   S+ RL  +      R+  I D   +  ++T   + +  + 
Sbjct: 298 GAIFNPDPKKPIGGNIVAHSSTTRLYFKKAKGANRICKIYDSPCLAESETVFALGQGGVI 357

Query: 261 SPFKQVE 267
            P  + E
Sbjct: 358 DPSDETE 364


>gi|159118412|ref|XP_001709425.1| DNA repair protein RAD51 [Giardia lamblia ATCC 50803]
 gi|33667818|gb|AAQ24509.1| Dmc1a [Giardia intestinalis]
 gi|157437541|gb|EDO81751.1| DNA repair protein RAD51 [Giardia lamblia ATCC 50803]
          Length = 389

 Score = 94.1 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 55/264 (20%), Positives = 92/264 (34%), Gaps = 33/264 (12%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K L+AA    Q  +  G +          + I  +S+G   LD  LG GG     I E+
Sbjct: 128 DKILDAARKHSQPGFMSGVV-----ALERRQRIRRISTGCSDLDALLG-GGIESMAITEV 181

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLI 124
           +G   SGKT L       +Q  G   A++D E          +           L  +  
Sbjct: 182 FGEFRSGKTQLCHTIAVTAQLDGSRVAYLDTEGTFRPEKIGPIAERYKLDPTTTLSRIAY 241

Query: 125 SQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           ++  T EQ +E+       +      +++IDS+ AL          G      + + + Q
Sbjct: 242 ARAYTHEQQIELLAAAAEQMSEKKFALLIIDSLTALFR----VDFTGRGELADRQQKLGQ 297

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIG---VMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
            L  L          +   NQ+  ++    +    P+   GG+ L   S+ RL +R+   
Sbjct: 298 HLASLAKLADEFNIAIFVTNQVMAQVDGAAMFTADPKKPIGGHILAHASTTRLYLRKGR- 356

Query: 239 IKDKDSITGNQTRVKVVKNKMASP 262
                   GN    K+  +     
Sbjct: 357 --------GNNRVAKIYDSPSLPE 372


>gi|146302794|ref|YP_001190110.1| DNA repair and recombination protein RadA [Metallosphaera sedula
           DSM 5348]
 gi|226736609|sp|A4YCN4|RADA_METS5 RecName: Full=DNA repair and recombination protein radA
 gi|145701044|gb|ABP94186.1| DNA repair and recombination protein RadA [Metallosphaera sedula
           DSM 5348]
          Length = 324

 Score = 94.1 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 95/241 (39%), Gaps = 32/241 (13%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGT 97
            ++ +++GS  LD  LG GG     + E++G   SGKT +        Q         G 
Sbjct: 85  SVKKITTGSQALDGLLG-GGIETRTMTELFGEFGSGKTQICHQVSVNVQLPPERGGLSGK 143

Query: 98  CAFVDAEHALDSIYARKLG--------VDLKNLLISQPDTGEQALEITDM----LVRSGA 145
             ++D E    +   + +           L+N++  +    +  + I +     + +  +
Sbjct: 144 ALYIDTEGTFRTERIKAMASALGLEPKEVLQNIMSIRAINTDHQIAIVEELQDIIAKDNS 203

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           + ++V+DS+ +   RAE  G        ++ + +++ L +L          ++  NQ+  
Sbjct: 204 IKLVVVDSITSHF-RAEYSGREN---LAVRQQKLNRHLHQLVRLAEIYDLAVIVTNQVMA 259

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           +  + +G P    GG+ L     +R+ I++           GN+   ++V        + 
Sbjct: 260 RPDMFYGDPTVAVGGHTLYHVPGIRVQIKKSR---------GNRRIARMVDAPHLPEGEV 310

Query: 266 V 266
           V
Sbjct: 311 V 311


>gi|320580957|gb|EFW95179.1| DNA repair protein Rad51 [Pichia angusta DL-1]
          Length = 369

 Score = 94.1 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 100/247 (40%), Gaps = 31/247 (12%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  LG GG   G I E++G   +GK+ L        Q         G C +
Sbjct: 123 CLTTGSKQLDTLLG-GGIETGAITEVFGEFRTGKSQLCHTLAVTCQLPIDNGGGEGKCLY 181

Query: 101 VDAEHALDSIY----ARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDII 149
           +D E     I     AR+ G+D    L N+  ++    +  L++      ++      ++
Sbjct: 182 IDTEGTFRPIRLVAIARRFGLDENETLDNVAYARAYNADHQLQLLHQAASMMTESRFSLL 241

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DS+ AL  R +  G    S   M    +++ +R L          +V  NQ+  ++  
Sbjct: 242 IVDSIMALY-RTDYSGRGELSARQMH---VAKFMRTLQRLADEFGIAVVITNQVVAQVDG 297

Query: 209 --VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMA 260
             +    P+   GGN +   S+ RL  +      R+  I D   +  ++T   + +  + 
Sbjct: 298 GAIFNPDPKKPIGGNIVAHSSTTRLYFKKAKGANRICKIYDSPCLAESETVFALGQGGVI 357

Query: 261 SPFKQVE 267
            P  + E
Sbjct: 358 DPSDETE 364


>gi|304569601|gb|ADM45305.1| Dmc1 [Litopenaeus vannamei]
          Length = 341

 Score = 94.1 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 92/244 (37%), Gaps = 34/244 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-------KTGGTCA 99
            VS+GS  LD  LG GG     I E++G   +GKT ++      +Q        +GG   
Sbjct: 100 RVSTGSAELDALLG-GGIESMAITEVFGEFRTGKTQISHTLCVTAQIPNEAGTYSGGKVI 158

Query: 100 FVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-----V 146
           F+D E+       R +           L N+L ++  T E  LEI D +           
Sbjct: 159 FIDTENTFRPDRLRPIADRYNLEQDAVLDNVLYTRAFTSEHQLEILDHVAAQFHEEPGIF 218

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++++DSV AL          G      + + ++Q + +L          +   NQM   
Sbjct: 219 KLLIVDSVMALFR----VDFSGRGELADRQQKLAQYMSRLQKISEEYNVSVFITNQMTAD 274

Query: 207 IGVMFG---SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKN 257
            G        P+   GG+ L   S+ R+ +R      R+  I D   +  N+    +   
Sbjct: 275 PGAAMSFQADPKKPIGGHILAHASTTRVCLRKGRGETRIAKIYDSPELPENECTFAITAG 334

Query: 258 KMAS 261
            +A 
Sbjct: 335 GIAD 338


>gi|145239409|ref|XP_001392351.1| DNA repair protein rhp51 [Aspergillus niger CBS 513.88]
 gi|134076861|emb|CAK48229.1| unnamed protein product [Aspergillus niger]
          Length = 347

 Score = 94.1 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/291 (17%), Positives = 104/291 (35%), Gaps = 38/291 (13%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           ++  K ++    +K L  A+  +   +     M      +    +  +++GS  LD  LG
Sbjct: 60  LEQIKGISEQKATKVLVEAMKLVPMGFTTATEM-----HARRNELISITTGSKQLDTLLG 114

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARK 114
            GG   G I EI+G   +GK+ +        Q         G C ++D E     +    
Sbjct: 115 -GGIETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLLA 173

Query: 115 LGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEI 163
           +           L N+  ++    +  L++      ++      ++V+DS  +L      
Sbjct: 174 VAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLLVVDSATSLYR---- 229

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG-----VMFGSPETTT 218
               G      +   +++ +R L          +V  NQ+  ++      +    P+   
Sbjct: 230 TDFNGRGELSSRQTHLAKFMRTLQRLADEFGIAVVITNQVVAQVDGGPSAMFNPDPKKPI 289

Query: 219 GGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           GGN +   S+ RL ++      RV  I D   +  +     + ++ +  P 
Sbjct: 290 GGNIIAHASTTRLSLKKGRGETRVCKIYDSPCLPESDCLFAINEDGIGDPN 340


>gi|312136410|ref|YP_004003747.1| DNA repair and recombination protein rada [Methanothermus fervidus
           DSM 2088]
 gi|311224129|gb|ADP76985.1| DNA repair and recombination protein RadA [Methanothermus fervidus
           DSM 2088]
          Length = 311

 Score = 94.1 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 107/272 (39%), Gaps = 32/272 (11%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K + AA  +I+++  + A+          + +  +++GS  LD  +G GG     I E+
Sbjct: 49  EKIIAAA-RKIEKIDFETAL----DVVERRKNVGRITTGSKALDDLIG-GGIETQSITEV 102

Query: 73  YGPESSGKTTLALHTIAQSQ---KTGGT---CAFVDAEHALDSIYARKLGVD-------- 118
           +G   SGK+ LA       Q   + GG      F+D E+        ++           
Sbjct: 103 FGEFGSGKSQLAHELAVTVQLPIEKGGLEAEAVFIDTENTFRPERIEQIAKHFKLDTKKV 162

Query: 119 LKNLLISQPDTGEQALEITDML---VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           LKN+ +++       + + + +   ++ G    +VI        RAE  G         +
Sbjct: 163 LKNIYVARAFNSSHQILMAEKVNDLIQEGKNIRLVIVDSLTSHFRAEYVGREA---LATR 219

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
            + ++Q L  L +  +     +   NQ++ +    FGSP    GG+ L   ++ R+ +++
Sbjct: 220 QQKLNQHLHTLQNLATTYNIAVFVTNQVQARPDAFFGSPTKAIGGHVLGHAATYRIWLKK 279

Query: 236 VGSIK------DKDSITGNQTRVKVVKNKMAS 261
             + K      D   +   +   K+ +  +  
Sbjct: 280 GAAGKRIARLVDSPYLPEGECVFKITEEGIVD 311


>gi|254572065|ref|XP_002493142.1| Strand exchange protein, forms a helical filament with DNA that
           searches for homology [Pichia pastoris GS115]
 gi|238032940|emb|CAY70963.1| Strand exchange protein, forms a helical filament with DNA that
           searches for homology [Pichia pastoris GS115]
 gi|328352840|emb|CCA39238.1| DNA repair protein rhp51 [Pichia pastoris CBS 7435]
          Length = 362

 Score = 94.1 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 93/245 (37%), Gaps = 31/245 (12%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  LG GG   G I E++G   +GK+ L        Q         G C +
Sbjct: 121 CITTGSKKLDTLLG-GGIETGSITEVFGEFRTGKSQLCHTLAVTCQLPIDMGGGEGKCLY 179

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     I    +           L N+  ++    +  L++      ++      ++
Sbjct: 180 IDTEGTFRPIRLVSIAKRYGLNEDDTLDNVAYARAYNADHQLQLLNQAAAMMSESRFSLL 239

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           ++DS+ AL  R +  G    S   M    +++ +R L          ++  NQ+  ++  
Sbjct: 240 IVDSIMALY-RTDFSGRGELSARQMH---VAKYMRTLQRLADEFGIAVLITNQVVAQVDA 295

Query: 210 ---MFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMA 260
                  P+   GGN +   S+ RL  +      R+  I D   +  ++    + ++ + 
Sbjct: 296 SAVFNPDPKKPIGGNIVAHSSTTRLSFKKGKAEQRICKIYDSPCLPESECVFAIYEDGIG 355

Query: 261 SPFKQ 265
            P + 
Sbjct: 356 DPRED 360


>gi|330833876|ref|YP_004408604.1| DNA repair and recombination protein RadA [Metallosphaera cuprina
           Ar-4]
 gi|329566015|gb|AEB94120.1| DNA repair and recombination protein RadA [Metallosphaera cuprina
           Ar-4]
          Length = 324

 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 94/241 (39%), Gaps = 32/241 (13%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGT 97
            ++ +++GS  LD  LG GG     + E++G   SGKT +        Q         G 
Sbjct: 85  SVKKITTGSQALDGLLG-GGIETRTMTELFGEFGSGKTQICHQVSVNVQLPSEKGGLSGK 143

Query: 98  CAFVDAEHALDSIYARKLG--------VDLKNLLISQPDTGEQALEITDMLVRSGAVD-- 147
             ++D E    +   + +           L+N++  +    +  + I + L    + D  
Sbjct: 144 ALYIDTEGTFRTERIKAMASALGLDPKEVLQNIMSIRAINTDHQIAIVEELQDIISKDNT 203

Query: 148 --IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
             ++V+DS+ +   RAE  G        ++ + +++ L +L          ++  NQ+  
Sbjct: 204 IKLVVVDSITSHF-RAEYSGREN---LAVRQQKLNRHLHQLVRLAEIYDLAVIVTNQVMA 259

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           +  + +G P    GG+ L     +R+ I++           GN+   ++V        + 
Sbjct: 260 RPDMFYGDPTVAVGGHTLYHVPGIRVQIKKSR---------GNRRIARMVDAPHLPEGEV 310

Query: 266 V 266
           V
Sbjct: 311 V 311


>gi|301124545|ref|XP_002909710.1| protein recA [Phytophthora infestans T30-4]
 gi|262106791|gb|EEY64843.1| protein recA [Phytophthora infestans T30-4]
          Length = 131

 Score = 93.8 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 65/126 (51%), Positives = 83/126 (65%), Gaps = 19/126 (15%)

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
            VAAL PRAE+EG+MG+    +QARLMSQAL                      K+G++FG
Sbjct: 15  GVAALVPRAELEGEMGDQQIALQARLMSQAL-------------------HSSKVGIIFG 55

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           SPE T+GG AL++Y+SVRLDIRR  +IK+ D + GN+T VKV KNK+ASPFK   FD+M+
Sbjct: 56  SPEVTSGGTALRYYASVRLDIRRKTAIKEGDQVVGNETAVKVAKNKLASPFKVATFDMMF 115

Query: 273 GEGISF 278
           G GI  
Sbjct: 116 GRGIDR 121


>gi|323934231|gb|EGB30655.1| RecA protein [Escherichia coli E1520]
          Length = 779

 Score = 93.8 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 126/300 (42%), Gaps = 32/300 (10%)

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK----NLLISQPDTGEQA 133
           S  T LA   +  +QK  G   F+D E++ D   A   G++        +  QPDT E +
Sbjct: 484 SHNTFLATAAMISAQKQDGLAVFLDHENSFDVGLAVANGLNADEDDGQWVYKQPDTFEDS 543

Query: 134 LEITDML---------VRSGAVDIIVIDSVAALTP--RAEIEGDMGESLPGMQ------- 175
           +E+   +         +   A   IV DS+A++ P  +AE    M E     +       
Sbjct: 544 VELIGTILKLVRDEELIPESAPICIVADSLASMVPNSKAEKFEKMAEGTAKDKDQLNMND 603

Query: 176 ----ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
               AR  S     L     +    ++F+NQ+R KIGVMFG P T+ GG++ KFY+SVR+
Sbjct: 604 NTALARATSANFPTLALWARKYNACIIFLNQVRTKIGVMFGDPTTSPGGDSPKFYASVRI 663

Query: 232 DIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG--EGISFFGELIDLGVKA 289
            +     +KD     G     + +KNK+A P+ +  +   +    G+     L++  ++ 
Sbjct: 664 RL-GASVMKDGKEKIGQDVGAECIKNKVAPPYGKCTWKFYFDPTRGLDVIESLVEYMLEE 722

Query: 290 SIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
             + K+ +     G +     +  +++ RE       I + L+      A     EP   
Sbjct: 723 GYLPKNASGRVEIGDKKYTKSQIVEMY-REKP--LAEIIAALQAIDDRRAKDNPTEPVEE 779



 Score = 50.2 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 83/227 (36%), Gaps = 38/227 (16%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRI 69
             AL  AL +           ++GS   I +    + +G   L+ A+     GGFP GRI
Sbjct: 5   KSALALALKK-----------KIGSNDEIQKVTHWIDTGFPPLNKAISGRYDGGFPCGRI 53

Query: 70  VEIYGPESSGKT------------TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           VE++GP S+GK              + +  + + +    TC   D EH +  I    +  
Sbjct: 54  VEVFGPPSAGKCVTADTMLLTERGMVTVKELFEIEGYKATCTTRDVEHNVGLINENGVIE 113

Query: 118 DLKNLLISQPDTGEQ-ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM-- 174
              +L  +     ++  L     +  +    I V+D +  +  R   +  +G+++P M  
Sbjct: 114 KTSHLTWNNRRKFKRIKLASGGYIEATFRHPIRVVDDLGNVVWRHAEKISVGDTIPSMVG 173

Query: 175 ----QARLMSQALRKLTSSIS-----RSKCILVFINQMRMKIGVMFG 212
                 + +   + KL   +       S+  + F N         + 
Sbjct: 174 THQFGDQHLDANIAKLMGYLIADGYVASENSVNFSNTDPFIKDEYYR 220


>gi|330919603|ref|XP_003298683.1| hypothetical protein PTT_09464 [Pyrenophora teres f. teres 0-1]
 gi|311328005|gb|EFQ93221.1| hypothetical protein PTT_09464 [Pyrenophora teres f. teres 0-1]
          Length = 348

 Score = 93.8 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 90/247 (36%), Gaps = 33/247 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  L  GG   G I EI+G   +GK+ L        Q         G C +
Sbjct: 99  SITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQLCHTLAVTCQLPFDMGGGEGKCIY 157

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     +    +           L N+  ++    +  LE+      ++      ++
Sbjct: 158 IDTEGTFRPVRCLAVANRFGLSGEEVLDNVAYARAYNSDHQLELLNQAAQMMTETRFSLL 217

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           V+DS  AL         +G      +   +++ +R L          ++  NQ+  ++  
Sbjct: 218 VVDSAMALYR----TDFVGRGELSARQTHLAKFMRTLQRLADEFGIAVIITNQVVAQVDG 273

Query: 209 ----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               +    P+   GGN +   S+ RL +R      RV  I D   +  +     + ++ 
Sbjct: 274 GPSAMFNPDPKKPIGGNIIAHASTTRLSLRKGRGETRVCKIYDSPCLPESDCLFAINEDG 333

Query: 259 MASPFKQ 265
           +  P  +
Sbjct: 334 IGDPKDK 340


>gi|30578211|gb|AAP35102.1|AF485823_1 DMC1-A [Giardia intestinalis]
          Length = 389

 Score = 93.8 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 55/264 (20%), Positives = 92/264 (34%), Gaps = 33/264 (12%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K L+AA    Q  +  G +          + I  +S+G   LD  LG GG     I E+
Sbjct: 128 DKILDAARKHSQPGFMSGVV-----ALERRQRIRRISTGCSDLDALLG-GGIESMAITEV 181

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLI 124
           +G   SGKT L       +Q  G   A++D E          +           L  +  
Sbjct: 182 FGEFRSGKTQLCHTIAVTAQLDGSRVAYLDTEGTFRPEKIGPIAERYKLDPTTTLSRIAY 241

Query: 125 SQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           ++  T EQ +E+       +      +++IDS+ AL          G      + + + Q
Sbjct: 242 ARAYTHEQQIELLAAAAEQMSEKKFALLIIDSLTALFR----VDFTGRGELADRQQKLGQ 297

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIG---VMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
            L  L          +   NQ+  ++    +    P+   GG+ L   S+ RL +R+   
Sbjct: 298 HLASLAKLADGFNIAIFVTNQVMAQVDGAAMFTADPKKPIGGHILAHASTTRLYLRKGR- 356

Query: 239 IKDKDSITGNQTRVKVVKNKMASP 262
                   GN    K+  +     
Sbjct: 357 --------GNNRVAKIYDSPSLPE 372


>gi|76801543|ref|YP_326551.1| DNA repair and recombination protein RadB [Natronomonas pharaonis
           DSM 2160]
 gi|76557408|emb|CAI48985.1| DNA repair and recombination protein [Natronomonas pharaonis DSM
           2160]
          Length = 231

 Score = 93.8 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 55/229 (24%), Positives = 87/229 (37%), Gaps = 22/229 (9%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + +G   +D  LG GGF +G + ++YGP +SGKT LAL    Q    GGT  ++D E 
Sbjct: 3   EPIPTGCDTVDTLLG-GGFERGTVTQLYGPPASGKTNLALSAAVQVAADGGTALYIDTEG 61

Query: 106 ALDSIYARKLGVDLKNLLISQPD--------TGEQALEITDMLVRSGAVDIIVIDSVAAL 157
                + +       +L  +             +Q   + D    +   D++V+DS    
Sbjct: 62  VSLDRFEQLARGATDDLEGTTSRVIISDALDFDDQREAVQDAGDLAATADLVVLDSATGF 121

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
                   D GE+L     R ++  +  L     R    +V  NQ+         S    
Sbjct: 122 YRLERDTDDDGETL-----REVATQVTHLLGLARRHDLAVVITNQVYTDPEAD-SSRVRP 175

Query: 218 TGGNALKFYSSVRLDI-------RRVGSIKDKDSITGNQTRVKVVKNKM 259
            GG+ L  +S   L I       RR    K +    G   R K+  + +
Sbjct: 176 LGGHTLSHWSGTVLRIERFRGGNRRATLEKHQAKAAGETARFKITDSGL 224


>gi|169781702|ref|XP_001825314.1| DNA repair protein rhp51 [Aspergillus oryzae RIB40]
 gi|238498508|ref|XP_002380489.1| DNA repair protein RAD51, putative [Aspergillus flavus NRRL3357]
 gi|83774056|dbj|BAE64181.1| unnamed protein product [Aspergillus oryzae]
 gi|220693763|gb|EED50108.1| DNA repair protein RAD51, putative [Aspergillus flavus NRRL3357]
          Length = 348

 Score = 93.4 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 89/244 (36%), Gaps = 33/244 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  LG GG   G I EI+G   +GK+ +        Q         G C +
Sbjct: 102 SITTGSKQLDTLLG-GGIETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLY 160

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     +    +           L N+  ++    +  L++      ++      ++
Sbjct: 161 IDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 220

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           V+DS  AL          G      +   +++ +R L          +V  NQ+  ++  
Sbjct: 221 VVDSATALYR----TDFNGRGELSTRQTHLAKFMRTLQRLADEFGIAVVITNQVVAQVDG 276

Query: 209 ----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               +    P+   GGN +   S+ RL ++      RV  I D   +  +     + ++ 
Sbjct: 277 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRVCKIYDSPCLPESDCLFAINEDG 336

Query: 259 MASP 262
           +  P
Sbjct: 337 IGDP 340


>gi|315231638|ref|YP_004072074.1| DNA repair and recombination RadA-like protein [Thermococcus
           barophilus MP]
 gi|315184666|gb|ADT84851.1| DNA repair and recombination RadA-like protein [Thermococcus
           barophilus MP]
          Length = 355

 Score = 93.4 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 99/260 (38%), Gaps = 33/260 (12%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G  ++        + I  +S+GS  LD  LG GG     I E++G   SGKT +A     
Sbjct: 101 GTFIRADEYFQRRQTIGRISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQIAHTLAV 159

Query: 90  QSQ------KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQAL- 134
             Q         G+  ++D E+       R++  +        LKN+ +++       + 
Sbjct: 160 MVQLPPEEGGLNGSVIWIDTENTFRPERIRQIAENRGLDPDEVLKNIYVARAYNTNHQML 219

Query: 135 -------EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
                   I + L     V ++V+DS+ +   R+E  G         + + + + L  L 
Sbjct: 220 LVEKAEEIIKEKLNTDRPVKLMVVDSLTSHF-RSEYVGRGA---LAERQQKLGKHLADLH 275

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK------D 241
              +     +   NQ++ +    FG P    GG+ L   +++R+ +R+  + K      D
Sbjct: 276 RLANLYDIAIFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRIYLRKGKAGKRIARLID 335

Query: 242 KDSITGNQTRVKVVKNKMAS 261
              +   +   ++    +  
Sbjct: 336 SPHLPEGEAAFRITDKGIED 355


>gi|241958150|ref|XP_002421794.1| DNA repair protein rad51 homologue, putative [Candida dubliniensis
           CD36]
 gi|223645139|emb|CAX39736.1| DNA repair protein rad51 homologue, putative [Candida dubliniensis
           CD36]
          Length = 361

 Score = 93.4 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 88/244 (36%), Gaps = 32/244 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  LG GG   G I E++G   +GK+ L        Q         G C +
Sbjct: 118 CLTTGSKQLDTLLG-GGIETGSITEVFGEFRTGKSQLCHTLAVTCQLPIDMGGGEGKCLY 176

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQA---LEITDMLVRSGAVDII 149
           +D E          +           L N+  ++    E     L I   ++      ++
Sbjct: 177 IDTEGTFRPNRLVSIAQRYGLNPNDCLDNVAYARAYNAEHQLNLLNIASQMMAESRFSLL 236

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DS+ +L          G      +   +++ +R L          ++  NQ+  ++  
Sbjct: 237 IVDSIMSLYR----TDYAGRGELSARQTHVARFMRTLQRLADEFGIAVIITNQVVAQVDG 292

Query: 209 ---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
              +    P+   GGN +   S+ RL  +      R+  I D   +  ++    + ++ +
Sbjct: 293 MSGMFNPDPKKPIGGNIIAHASTTRLSFKKGRGETRICKIYDSPCLPESECVFAIYEDGI 352

Query: 260 ASPF 263
             P 
Sbjct: 353 GDPK 356


>gi|83595207|gb|ABC25058.1| recombinase A [Lactobacillus sakei]
          Length = 114

 Score = 93.4 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 76/114 (66%), Positives = 96/114 (84%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           +D  YA  LGV++ +LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEIEG+
Sbjct: 1   MDPKYATALGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDILVVDSVAALVPRAEIEGE 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
           MG++  G+QARLM QALRKL+ +I+++K I +FINQ+R K+ VMFG+PETTTGG
Sbjct: 61  MGDAHVGLQARLMPQALRKLSGTINKTKTIALFINQIREKVDVMFGNPETTTGG 114


>gi|315426193|dbj|BAJ47837.1| DNA repair protein RadA [Candidatus Caldiarchaeum subterraneum]
          Length = 316

 Score = 93.4 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 94/248 (37%), Gaps = 31/248 (12%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
              + ++ +++GS  LD  LG GG     I E+ G   SGKT +       +Q       
Sbjct: 71  ERRKAMQRLTTGSRALDAMLG-GGVETQAITELIGEFGSGKTQVCHTLCVMAQLPREQGG 129

Query: 94  TGGTCAFVDAEHALDSIYARKLG--------VDLKNLLISQPDTGEQ---ALEITDMLVR 142
             G+  ++D E         ++           L+N++ +           ++     V 
Sbjct: 130 LEGSAIYIDTEATFRPERISQIAEARGLDPQKILENIIFASVYNSSHLQLTVKELGRYVE 189

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                +++IDS+ +   RAE    +G      + + ++  L +L  +       +V  NQ
Sbjct: 190 KYKARLVIIDSIISHF-RAEF---IGRGTLAERQQRLNDLLHRLLRTAQVHNIAVVLTNQ 245

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           ++      FG P   +GG+ L   S+ R+ IRR  +         N    +++ +    P
Sbjct: 246 VQANPDQFFGDPNKPSGGHVLAHSSTYRIFIRRAAN---------NTRLARIIDSPYHPP 296

Query: 263 FKQVEFDI 270
             +  F I
Sbjct: 297 TAEAYFKI 304


>gi|169623440|ref|XP_001805127.1| hypothetical protein SNOG_14961 [Phaeosphaeria nodorum SN15]
 gi|160704983|gb|EAT77504.2| hypothetical protein SNOG_14961 [Phaeosphaeria nodorum SN15]
          Length = 1641

 Score = 93.4 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 90/247 (36%), Gaps = 33/247 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  L  GG   G I EI+G   +GK+ +        Q         G C +
Sbjct: 109 SITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLY 167

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     +    +           L N+  ++    +  LE+      ++      ++
Sbjct: 168 IDTEGTFRPVRCLAVANRFGLSGEEVLDNVAYARAYNSDHQLELLNQAAQMMTETRFSLL 227

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DS  +L          G      +   +++ +R L          +V  NQ+  ++  
Sbjct: 228 IVDSATSLYR----TDFAGRGELSSRQTHLAKFMRTLQRLADEFGIAVVITNQVVAQVDG 283

Query: 209 ----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               +    P+   GGN +   S+ RL +R      RV  I D   +  +     + ++ 
Sbjct: 284 GPSAMFNPDPKKPIGGNIIAHASTTRLSLRKGRGETRVCKIYDSPCLPESDCLFAINEDG 343

Query: 259 MASPFKQ 265
           +  P ++
Sbjct: 344 IGDPKEK 350


>gi|269986696|gb|EEZ92976.1| DNA repair and recombination protein RadA [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 345

 Score = 93.4 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 99/247 (40%), Gaps = 29/247 (11%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------ 92
               + ++ +S+ S  L+I LG GG     I E YG   SGK+ LA       Q      
Sbjct: 97  EDKRKSVQRISTSSEALNILLG-GGVETQSITECYGEYGSGKSQLAFQLAVDVQLPLEKG 155

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQAL----EITDML 140
              G   ++D E         +L           L+N+ I +  + +  +    ++ +++
Sbjct: 156 GLEGHAIWIDTEGTFRPSRIEQLAAVKGLDPKQALQNIKIGRAYSSDHQVLLVDKVPELI 215

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
                + +IV+DS+ AL  RAE  G         + + ++  L  L     R    +   
Sbjct: 216 NADPKIKLIVVDSMMALF-RAEYVGR---GTLVDRQQKVNVVLHNLQRLADRFNVAVYIT 271

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKV 254
           NQ+  +  VMFG P    GG+ +   ++ R+ +R      RVG + D  S+   +   ++
Sbjct: 272 NQVMARPDVMFGDPTAAVGGHIIGHVATYRIYLRKGKKGSRVGKLVDSPSLPEGEASFEI 331

Query: 255 VKNKMAS 261
             N +  
Sbjct: 332 TSNGITD 338


>gi|242002736|ref|XP_002436011.1| meiotic recombination protein Dmc1, putative [Ixodes scapularis]
 gi|215499347|gb|EEC08841.1| meiotic recombination protein Dmc1, putative [Ixodes scapularis]
          Length = 341

 Score = 93.4 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 109/297 (36%), Gaps = 51/297 (17%)

Query: 6   EMNIVDKSKAL----EAALSQIQRVYGKGAIMQLGSQGSIFEGIEV---------VSSGS 52
           +M    K  A+    EA + +I     K  + ++   G     +EV         VS+GS
Sbjct: 52  QMTTRKKLCAIKGISEAKVDKI-----KEVVAKIADGGGFLTALEVCEKRRHVFRVSTGS 106

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHA 106
             LD  +G GG     I E++G   +GKT L+       Q       +GG   F+D E+ 
Sbjct: 107 KELDKLMG-GGVESMAITEVFGEFRTGKTQLSHTLCVTCQLPGENGYSGGKAMFIDTENT 165

Query: 107 LDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-----VDIIVIDS 153
                 R +           L+N+L ++  T E  +E+ D +            ++++DS
Sbjct: 166 FRPDRLRDIADRFNLDHAAMLENILYARAFTSEHQMEMLDQVAAKFHEEAGVYRLLIVDS 225

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG- 212
           + AL          G      + + ++Q L KL          +   NQM    G     
Sbjct: 226 IMALFR----VDFSGRGELADRQQKLAQMLSKLQKISEEYNVAVFITNQMTADPGAAMSF 281

Query: 213 --SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
              P+   GG+ L   S+ R+ +R      R+  I D      N+    +    +A 
Sbjct: 282 QADPKKPIGGHILAHASTTRIALRKGRAEVRIAKIYDSPDQPENEATFAITAGGVAD 338


>gi|25012918|gb|AAN71546.1| RH24133p [Drosophila melanogaster]
          Length = 284

 Score = 93.4 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 88/250 (35%), Gaps = 30/250 (12%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----- 94
            +   +  +S+GS  LD  LG GG   G I EI+G    GKT L        Q       
Sbjct: 34  QMRADVVQLSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKG 92

Query: 95  -GGTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQALEITDM---LVR 142
             G C ++D E+         +           L N+  ++    +Q  ++  M   ++ 
Sbjct: 93  GEGKCMYIDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGMLF 152

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                ++++DS  AL         +G      +   +   LR L          +V  NQ
Sbjct: 153 ESRYALLIVDSAMALYR----SDYIGRGELAARQNHLGLFLRMLQRLADEFGVAVVITNQ 208

Query: 203 MRMKIG--VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKV 254
           +   +         +   GG+ +   S+ RL +R      R+  I D   +  ++    +
Sbjct: 209 VTASLDGAPGMFDAKKPIGGHIMAHSSTTRLYLRKGKGETRICKIYDSPCLPESEAMFAI 268

Query: 255 VKNKMASPFK 264
           + + +    +
Sbjct: 269 LPDGIGDAGR 278


>gi|24651285|ref|NP_733342.1| spindle A, isoform B [Drosophila melanogaster]
 gi|23172653|gb|AAN14213.1| spindle A, isoform B [Drosophila melanogaster]
          Length = 279

 Score = 93.0 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 87/259 (33%), Gaps = 33/259 (12%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----- 94
            +   +  +S+GS  LD  LG GG   G I EI+G    GKT L        Q       
Sbjct: 34  QMRADVVQLSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKG 92

Query: 95  -GGTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQALEITDM---LVR 142
             G C ++D E+         +           L N+  ++    +Q  ++  M   ++ 
Sbjct: 93  GEGKCMYIDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGMLF 152

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                ++++DS  AL         +G      +   +   LR L          +V  NQ
Sbjct: 153 ESRYALLIVDSAMALYR----SDYIGRGELAARQNHLGLFLRMLQRLADEFGVAVVITNQ 208

Query: 203 MRMKIG--VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           +   +         +   GG+ +   S+ RL +R+           G     K+  +   
Sbjct: 209 VTASLDGAPGMFDAKKPIGGHIMAHSSTTRLYLRKGK---------GETRICKIYDSPCL 259

Query: 261 SPFKQVEFDIMYGEGISFF 279
              + +   +  G G +  
Sbjct: 260 PESEAMFAILPDGIGDARE 278


>gi|253744423|gb|EET00637.1| DNA repair protein RAD51 [Giardia intestinalis ATCC 50581]
          Length = 370

 Score = 93.0 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 55/264 (20%), Positives = 92/264 (34%), Gaps = 33/264 (12%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K L+AA    Q  +     M   +     + I  +S+G   LD  LG GG     I E+
Sbjct: 109 DKILDAARKHSQPGF-----MSGITALERRQRIRRISTGCSDLDTLLG-GGIESMAITEV 162

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLI 124
           +G   SGKT L       +Q  G   A++D E          +           L  +  
Sbjct: 163 FGEFRSGKTQLCHTIAVTAQLDGSRVAYLDTEGTFRPEKIGPIAERYKLDPTVTLSKIAY 222

Query: 125 SQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           ++  T EQ +E+       +      +++IDS+ AL          G      + + + Q
Sbjct: 223 ARAYTHEQQIELLAAAAEQMSEKKFALLIIDSLTALFR----VDFTGRGELADRQQKLGQ 278

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIG---VMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
            L  L          +   NQ+  ++    +    P+   GG+ L   S+ RL +R+   
Sbjct: 279 HLASLAKLADEFNIAIFVTNQVMAQVDGAAMFTADPKKPIGGHILAHASTTRLYLRKGR- 337

Query: 239 IKDKDSITGNQTRVKVVKNKMASP 262
                   GN    K+  +     
Sbjct: 338 --------GNNRVAKIYDSPSLPE 353


>gi|324516267|gb|ADY46476.1| Meiotic recombination protein DMC1/LIM15 [Ascaris suum]
          Length = 348

 Score = 93.0 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 93/244 (38%), Gaps = 34/244 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCA 99
            +S+GS  LD  LG GG     I E++G   +GKT L+    A  Q         GG   
Sbjct: 107 RISTGSRELDKLLG-GGIESQAITEVFGEFRTGKTQLSHTLCATCQMPNAATSFKGGKVI 165

Query: 100 FVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-----V 146
           F+D E+       R++           L N+L ++  T +  +E+ D +           
Sbjct: 166 FIDTENTFRPDRLRQICDRFNMDQEAMLDNVLYARAYTSDHQVELLDYVAAKFHEELGVF 225

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++++DSV AL          G      + + ++Q + +L          +   NQM   
Sbjct: 226 KLLIVDSVMALFR----VDYSGRGELAERQQKLAQMMSRLQKIAEEYNIAVFITNQMTAD 281

Query: 207 IGVMFG---SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKN 257
            G        P+   GG+ L   S+ R+ ++      R+  I D   +  N+    + + 
Sbjct: 282 PGAGMTFQADPKKPIGGHILAHASTTRIMLKKGRGETRIAKIYDSPDMPENEATFAITEG 341

Query: 258 KMAS 261
            +A 
Sbjct: 342 GVAD 345


>gi|309797641|ref|ZP_07692028.1| RecA protein [Escherichia coli MS 145-7]
 gi|308118738|gb|EFO56000.1| RecA protein [Escherichia coli MS 145-7]
          Length = 779

 Score = 93.0 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 72/278 (25%), Positives = 123/278 (44%), Gaps = 31/278 (11%)

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK----NLLISQPDTGEQA 133
           S  T LA   +  +QK  G   F+D E++ D   A   G++        +  QPDT E +
Sbjct: 484 SHNTFLATAAMISAQKQDGLAVFLDHENSFDVGLAVANGLNADEDDGQWVYKQPDTFEDS 543

Query: 134 LEITDML---------VRSGAVDIIVIDSVAALTP--RAEIEGDMGESLPGMQ------- 175
           +E+   +         +   A   IV DS+A++ P  +AE    M E     +       
Sbjct: 544 VELIGTILKLVRDEELIPESAPICIVADSLASMVPNSKAEKFEKMAEGTAKDKDQLNMND 603

Query: 176 ----ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
               AR  S     L     +    ++F+NQ+R KIGVMFG P T+ GG++ KFY+SVR+
Sbjct: 604 NTALARATSANFPTLALWARKYNACIIFLNQVRTKIGVMFGDPTTSPGGDSPKFYASVRI 663

Query: 232 DIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG--EGISFFGELIDLGVKA 289
            +     +KD     G     + +KNK+A P+ +  +   +    G+     L++  ++ 
Sbjct: 664 RL-GASVMKDGKEKIGQDVGAECIKNKVAPPYGKCTWKFYFDPTRGLDVIESLVEYMLEE 722

Query: 290 SIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327
             + K+ +     G +     +  +++ RE   +AE I
Sbjct: 723 GYLPKNASGRVEIGDKKYTKSQIVEMY-REKP-LAEII 758



 Score = 50.2 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 83/227 (36%), Gaps = 38/227 (16%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRI 69
             AL  AL +           ++GS   I +    + +G   L+ A+     GGFP GRI
Sbjct: 5   KSALALALKK-----------KIGSNDEIQKVTHWIDTGFPPLNKAISGRYDGGFPCGRI 53

Query: 70  VEIYGPESSGKT------------TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           VE++GP S+GK              + +  + + +    TC   D EH +  I    +  
Sbjct: 54  VEVFGPPSAGKCVTADTMLLTERGMVTVKELFEIEGYKATCTTRDVEHNVGLINENGVIE 113

Query: 118 DLKNLLISQPDTGEQ-ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM-- 174
              +L  +     ++  L     +  +    I V+D +  +  R   +  +G+++P M  
Sbjct: 114 KTSHLTWNNRRKFKRIKLASGGYIEATFRHPIRVVDDLGNVVWRHAEKISVGDTIPSMVG 173

Query: 175 ----QARLMSQALRKLTSSIS-----RSKCILVFINQMRMKIGVMFG 212
                 + +   + KL   +       S+  + F N         + 
Sbjct: 174 THQFGDQHLDANIAKLMGYLIADGYVASENSVNFSNTDPFIKDEYYR 220


>gi|308159744|gb|EFO62265.1| DNA repair protein RAD51 [Giardia lamblia P15]
          Length = 389

 Score = 93.0 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 54/264 (20%), Positives = 92/264 (34%), Gaps = 33/264 (12%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K L+AA    Q  +     M   +     + I  +S+G   LD  LG GG     I E+
Sbjct: 128 DKILDAARKHSQPGF-----MSGVAALERRQRIRRISTGCSDLDALLG-GGIESMAITEV 181

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLI 124
           +G   SGKT L       +Q  G   A++D E          +           L  +  
Sbjct: 182 FGEFRSGKTQLCHTIAVTAQLDGSRVAYLDTEGTFRPEKIGPIAERYKLDPTTALSKIAY 241

Query: 125 SQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           ++  T EQ +E+       +      ++++DS+ AL          G      + + + Q
Sbjct: 242 ARAYTHEQQIELLAAAAEQMSEKKFALLIVDSLTALFR----VDFTGRGELADRQQKLGQ 297

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIG---VMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
            L  L          +   NQ+  ++    +    P+   GG+ L   S+ RL +R+   
Sbjct: 298 HLASLAKLADEFNIAIFVTNQVMAQVDGAAMFTADPKKPIGGHILAHASTTRLYLRKGR- 356

Query: 239 IKDKDSITGNQTRVKVVKNKMASP 262
                   GN    K+  +     
Sbjct: 357 --------GNNRVAKIYDSPSLPE 372


>gi|194905727|ref|XP_001981245.1| GG11967 [Drosophila erecta]
 gi|190655883|gb|EDV53115.1| GG11967 [Drosophila erecta]
          Length = 335

 Score = 93.0 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 87/259 (33%), Gaps = 33/259 (12%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----- 94
            +   +  +S+GS  LD  LG GG   G I EI+G    GKT L        Q       
Sbjct: 90  QMRADVVQLSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKG 148

Query: 95  -GGTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQALEITDM---LVR 142
             G C ++D E+         +           L N+  ++    +Q  ++  M   ++ 
Sbjct: 149 GEGKCMYIDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGMLF 208

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                ++++DS  AL         +G      +   +   LR L          +V  NQ
Sbjct: 209 ESRYALLIVDSAMALYR----SDYIGRGELAARQNHLGLFLRMLQRLADEFGVAVVITNQ 264

Query: 203 MRMKIG--VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           +   +         +   GG+ +   S+ RL +R+           G     K+  +   
Sbjct: 265 VTASLDGAPGMFDAKKPIGGHIMAHSSTTRLYLRKGK---------GETRICKIYDSPCL 315

Query: 261 SPFKQVEFDIMYGEGISFF 279
              + +   +  G G +  
Sbjct: 316 PESEAMFAILPDGIGDARE 334


>gi|195574987|ref|XP_002105464.1| GD17366 [Drosophila simulans]
 gi|194201391|gb|EDX14967.1| GD17366 [Drosophila simulans]
          Length = 336

 Score = 93.0 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 87/259 (33%), Gaps = 33/259 (12%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----- 94
            +   +  +S+GS  LD  LG GG   G I EI+G    GKT L        Q       
Sbjct: 91  QMRADVVQLSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKG 149

Query: 95  -GGTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQALEITDM---LVR 142
             G C ++D E+         +           L N+  ++    +Q  ++  M   ++ 
Sbjct: 150 GEGKCMYIDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGMLF 209

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                ++++DS  AL         +G      +   +   LR L          +V  NQ
Sbjct: 210 ESRYALLIVDSAMALYR----SDYIGRGELAARQNHLGLFLRMLQRLADEFGVAVVITNQ 265

Query: 203 MRMKIG--VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           +   +         +   GG+ +   S+ RL +R+           G     K+  +   
Sbjct: 266 VTASLDGAPGMFDAKKPIGGHIMAHSSTTRLYLRKGK---------GETRICKIYDSPCL 316

Query: 261 SPFKQVEFDIMYGEGISFF 279
              + +   +  G G +  
Sbjct: 317 PESEAMFAILPDGIGDARE 335


>gi|121701915|ref|XP_001269222.1| DNA repair protein RAD51, putative [Aspergillus clavatus NRRL 1]
 gi|119397365|gb|EAW07796.1| DNA repair protein RAD51, putative [Aspergillus clavatus NRRL 1]
          Length = 347

 Score = 93.0 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 89/244 (36%), Gaps = 33/244 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  LG GG   G I EI+G   +GK+ +        Q         G C +
Sbjct: 101 SITTGSKQLDTLLG-GGIETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLY 159

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     +    +           L N+  ++    +  L++      ++      ++
Sbjct: 160 IDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 219

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           V+DS  +L          G      +   +++ +R L          +V  NQ+  ++  
Sbjct: 220 VVDSATSLYR----TDFNGRGELSSRQTHLAKFMRTLQRLADEFGIAVVITNQVVAQVDG 275

Query: 209 ----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               +    P+   GGN +   S+ RL ++      RV  I D   +  +     + ++ 
Sbjct: 276 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRVCKIYDSPCLPESDCLFAINEDG 335

Query: 259 MASP 262
           +  P
Sbjct: 336 IGDP 339


>gi|146330537|gb|ABQ23182.1| Dmc1 [Carassius auratus]
          Length = 342

 Score = 93.0 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 60/278 (21%), Positives = 105/278 (37%), Gaps = 40/278 (14%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEV-----VSSGSLGLDIALGIGGFPKGRIVE 71
           EA + +I+   GK  +M  G Q +    I+      +++GSL  D  LG GG     I E
Sbjct: 69  EAKVDKIKEAAGK--LMICGFQAASEYSIKRKQVFHITTGSLEFDKLLG-GGVESMAITE 125

Query: 72  IYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKLGVD------- 118
            +G   +GKT L+      +Q        GG   F+D+E+       + +          
Sbjct: 126 AFGEFRTGKTQLSHTLCVTAQLPGEYGYPGGKVIFIDSENTFRPERLKDIADRFSVDHEA 185

Query: 119 -LKNLLISQPDTGEQALEITDMLVRSGA-----VDIIVIDSVAALTPRAEIEGDMGESLP 172
            L N+L ++  T E  +E+ D +            +++IDS+ AL          G    
Sbjct: 186 VLDNVLYARAYTSEHQMELLDFVAAKFHEEGGVFKLLIIDSIMALFR----VDFSGRGEL 241

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKI---GVMFGSPETTTGGNALKFYSSV 229
             + + ++Q L +L          +   NQM             P+   GG+ L   S+ 
Sbjct: 242 AERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGAGMTFQADPKKPIGGHVLAHASTT 301

Query: 230 RLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
           R+ +R      R+  I D   +  N+    +    ++ 
Sbjct: 302 RISLRKGRAELRIAKIFDSPDMPENEATFAITAGGISD 339


>gi|313231030|emb|CBY19028.1| unnamed protein product [Oikopleura dioica]
          Length = 334

 Score = 93.0 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 92/243 (37%), Gaps = 32/243 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-----GGTCAFV 101
            + +GS  LD  LG GG     I E++G   +GKT LA      +Q       GG  A++
Sbjct: 95  RIPTGSSELDRVLG-GGIESMAITEVFGEFRTGKTQLAHTLCVTTQMPGIGHSGGKVAYI 153

Query: 102 DAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-----VDI 148
           D E+       R +           L+N++ ++  T E  +E+ D++            I
Sbjct: 154 DTENTFRPDRLRPIAARFNLDADAILQNVVYARAFTSEHQMELLDLVAAQFYSEPGVFKI 213

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI- 207
           ++IDS+  L          G      + + ++Q L K+         ++   NQM     
Sbjct: 214 LIIDSIIGLFR----VDYSGRGELSERQQKLAQMLSKVQKISEEYNVVVYITNQMTADPG 269

Query: 208 --GVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
                   P+   GGN L   S  R+ +R      RV  I D   +  ++    + +  +
Sbjct: 270 AGMTFQIDPKKPVGGNILAHASQTRIMLRKGRGELRVAKIYDSPDMPESEATFAITEAGI 329

Query: 260 ASP 262
             P
Sbjct: 330 NDP 332


>gi|17864108|ref|NP_524583.1| spindle A, isoform A [Drosophila melanogaster]
 gi|2500104|sp|Q27297|RAD51_DROME RecName: Full=DNA repair protein Rad51 homolog; AltName:
           Full=Protein spindle-A; AltName: Full=RecA protein
           homolog
 gi|693878|dbj|BAA04580.1| Rad51 [Drosophila melanogaster]
 gi|762789|gb|AAA64873.1| RAD51-like protein [Drosophila melanogaster]
 gi|807700|dbj|BAA07039.1| RecA protein homologue [Drosophila melanogaster]
 gi|7301897|gb|AAF57005.1| spindle A, isoform A [Drosophila melanogaster]
 gi|255522982|gb|ACU12383.1| RE29170p [Drosophila melanogaster]
          Length = 336

 Score = 93.0 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 87/259 (33%), Gaps = 33/259 (12%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----- 94
            +   +  +S+GS  LD  LG GG   G I EI+G    GKT L        Q       
Sbjct: 91  QMRADVVQLSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKG 149

Query: 95  -GGTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQALEITDM---LVR 142
             G C ++D E+         +           L N+  ++    +Q  ++  M   ++ 
Sbjct: 150 GEGKCMYIDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGMLF 209

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                ++++DS  AL         +G      +   +   LR L          +V  NQ
Sbjct: 210 ESRYALLIVDSAMALYR----SDYIGRGELAARQNHLGLFLRMLQRLADEFGVAVVITNQ 265

Query: 203 MRMKIG--VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           +   +         +   GG+ +   S+ RL +R+           G     K+  +   
Sbjct: 266 VTASLDGAPGMFDAKKPIGGHIMAHSSTTRLYLRKGK---------GETRICKIYDSPCL 316

Query: 261 SPFKQVEFDIMYGEGISFF 279
              + +   +  G G +  
Sbjct: 317 PESEAMFAILPDGIGDARE 335


>gi|321471848|gb|EFX82820.1| hypothetical protein DAPPUDRAFT_299714 [Daphnia pulex]
          Length = 341

 Score = 92.6 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 90/252 (35%), Gaps = 34/252 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           V++GS  LD  LG GG   G I EI+G   +GKT L L      Q         G C ++
Sbjct: 104 VTTGSKELDKLLG-GGIETGSITEIFGEFRTGKTQLCLTLAVTCQLPIDSGGAEGKCLYI 162

Query: 102 DAEHALDSIYARKL--------GVDLKNLLISQPDTGEQA---LEITDMLVRSGAVDIIV 150
           D E          +           L N+  ++    +     L     ++      +++
Sbjct: 163 DTEGTFRPERLLAVAERYGLSGSDVLDNVACARAFNTDHQSQLLIQASAMMADSRYALLI 222

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG-- 208
           +DS  AL  R +  G    S   M    +++ LR L          +V  NQ+  ++   
Sbjct: 223 VDSATALY-RTDYSGRGELSARQMH---LARFLRMLLRLADEFGVAVVITNQVVAQVDGA 278

Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
            +    P+   GGN +   S+ RL +R+           G     K+  +      + + 
Sbjct: 279 AMFAADPKKPIGGNIMAHASTTRLYLRKGR---------GETRICKIYDSPCLPESEAMF 329

Query: 268 FDIMYGEGISFF 279
             +  G G S  
Sbjct: 330 AILPDGIGDSKE 341


>gi|222615516|gb|EEE51648.1| hypothetical protein OsJ_32955 [Oryza sativa Japonica Group]
          Length = 391

 Score = 92.6 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 57/275 (20%), Positives = 99/275 (36%), Gaps = 38/275 (13%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K  EAA   + + +  G+           + +  +++GS  LD  LG GG     I E 
Sbjct: 78  DKICEAAEKLLSQGFMTGS-----DLLIKRKSVVRITTGSQALDELLG-GGIETLCITEA 131

Query: 73  YGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYA----RKLGVD---- 118
           +G   SGKT LA      +Q         G  A++D E             + G+D    
Sbjct: 132 FGEFRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAV 191

Query: 119 LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           L N++ ++  T E    +       +      ++++DSV AL          G      +
Sbjct: 192 LDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAER 247

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDI 233
            + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +
Sbjct: 248 QQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLML 307

Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           R+           G Q   K+         + + F
Sbjct: 308 RKGK---------GEQRVCKIFDAPNLPEGEAISF 333


>gi|148727864|gb|ABR08567.1| Dmc1 [Carassius auratus x Cyprinus carpio x Carassius cuvieri]
          Length = 342

 Score = 92.6 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 60/278 (21%), Positives = 106/278 (38%), Gaps = 40/278 (14%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEV-----VSSGSLGLDIALGIGGFPKGRIVE 71
           EA + +I+   GK  +M  G Q +    ++      +++GSL  D  LG GG     I E
Sbjct: 69  EAKVDKIKEAAGK--LMICGFQTASEYSVKRKQVFHITTGSLEFDKLLG-GGVESMAITE 125

Query: 72  IYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKLGVD------- 118
            +G   +GKT L+      +Q       TGG   F+D+E+       + +          
Sbjct: 126 AFGEFRTGKTQLSHTLCVTAQLPGEYGYTGGKVIFIDSENTFRPERLKDIADRFSVDHEA 185

Query: 119 -LKNLLISQPDTGEQALEITDMLVRSGA-----VDIIVIDSVAALTPRAEIEGDMGESLP 172
            L N+L ++  T E  +E+ + +            +++IDS+ AL          G    
Sbjct: 186 VLDNVLYARAYTSEHQMELLNFVAAKFHEEGGVFKLLIIDSIMALFR----VDFSGRGEL 241

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG---SPETTTGGNALKFYSSV 229
             + + ++Q L +L          +   NQM    G        P+   GG+ L   S+ 
Sbjct: 242 AERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGAGMTFQADPKKPIGGHVLAHASTT 301

Query: 230 RLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
           R+ +R      R+  I D   +  N+    +    +  
Sbjct: 302 RISLRKGRAELRIAKIFDSPDMPENEATFAITAGGITD 339


>gi|148727866|gb|ABR08568.1| Dmc1 [Carassius auratus x Cyprinus carpio]
          Length = 342

 Score = 92.6 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 60/278 (21%), Positives = 104/278 (37%), Gaps = 40/278 (14%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEV-----VSSGSLGLDIALGIGGFPKGRIVE 71
           EA + +I+   GK  +M  G Q +    I+      +++GSL  D  LG GG     I E
Sbjct: 69  EAKVDKIKEAAGK--LMICGFQTASEYSIKRKQVLHITTGSLEFDKLLG-GGVESMAITE 125

Query: 72  IYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKLGVD------- 118
            +G   +GKT L+      +Q        GG   F+D+E+       + +          
Sbjct: 126 AFGEFRTGKTQLSHTLCVTAQLPGEYGYPGGKVIFIDSENTFRPERLKDIADRFSVDHEA 185

Query: 119 -LKNLLISQPDTGEQALEITDMLVRSGA-----VDIIVIDSVAALTPRAEIEGDMGESLP 172
            L N+L ++  T E  +E+ D +            +++IDS+ AL          G    
Sbjct: 186 VLDNVLYARAYTSEHQMELLDFVAAKFHEEGGVFKLLIIDSIMALFR----VDFSGRGEL 241

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKI---GVMFGSPETTTGGNALKFYSSV 229
             + + ++Q L +L          +   NQM             P+   GG+ L   S+ 
Sbjct: 242 AERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGAGMTFQADPKKPIGGHVLAHASTT 301

Query: 230 RLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
           R+ +R      R+  I D   +  N+    +    +  
Sbjct: 302 RISLRKGRAELRIAKIFDSPDMPENEATFAITAGGITD 339


>gi|221102981|ref|XP_002169171.1| PREDICTED: similar to DNA repair protein RAD51 homolog A [Hydra
           magnipapillata]
          Length = 336

 Score = 92.6 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 90/258 (34%), Gaps = 34/258 (13%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTG 95
              I  +SSGS  LD  L  GGF  G I EI+G   +GKT L        Q         
Sbjct: 93  RSEIIQISSGSKELDKLL-QGGFETGSITEIFGEFRTGKTQLCHQLCVTCQLPVDCGGAE 151

Query: 96  GTCAFVDAEHALDSIYA----RKLGVDLKNLLISQPD-------TGEQALEITDMLVRSG 144
           G   +VD E             + G++ + +L +             Q L     ++   
Sbjct: 152 GKAMYVDTEGTFRPERCLAVAERYGLNGQEVLDNVAYARAYNSDHQTQLLIHASAMMSEA 211

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  AL  R +  G    S   M    +++ LR L          +V  NQ+ 
Sbjct: 212 RYALLIVDSATALY-RTDYSGRGELSARQMH---LARFLRTLLRLADEFGVAVVITNQVV 267

Query: 205 MKIG---VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
            ++    +    P+   GGN +   S+ RL +R+           G     K+  +    
Sbjct: 268 AQVDGASMFQTDPKKPIGGNIMAHASTTRLSLRKGR---------GETRICKIYDSPCLP 318

Query: 262 PFKQVEFDIMYGEGISFF 279
             + +      G G +  
Sbjct: 319 ESEAMFTINPDGIGDAKE 336


>gi|195341431|ref|XP_002037313.1| GM12184 [Drosophila sechellia]
 gi|194131429|gb|EDW53472.1| GM12184 [Drosophila sechellia]
          Length = 336

 Score = 92.6 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 87/259 (33%), Gaps = 33/259 (12%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----- 94
            +   +  +S+GS  LD  LG GG   G I EI+G    GKT L        Q       
Sbjct: 91  QMRADVVQLSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKG 149

Query: 95  -GGTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQALEITDM---LVR 142
             G C ++D E+         +           L N+  ++    +Q  ++  M   ++ 
Sbjct: 150 GEGKCMYIDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGMLF 209

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                ++++DS  AL         +G      +   +   LR L          +V  NQ
Sbjct: 210 ESRYALLIVDSAMALYR----SDYIGRGELAARQNHLGLFLRMLQRLADEFGVAVVITNQ 265

Query: 203 MRMKIG--VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           +   +         +   GG+ +   S+ RL +R+           G     K+  +   
Sbjct: 266 VTASLDGAPGMFDAKKPIGGHIMAHSSTTRLYLRKGK---------GETRICKIYDSPCL 316

Query: 261 SPFKQVEFDIMYGEGISFF 279
              + +   +  G G +  
Sbjct: 317 PESEAMFAILPDGIGDARE 335


>gi|145492218|ref|XP_001432107.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399216|emb|CAK64710.1| unnamed protein product [Paramecium tetraurelia]
          Length = 340

 Score = 92.6 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 90/252 (35%), Gaps = 34/252 (13%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK------ 93
              E I  +S+GS   D  L  GG   G I EI+G   +GK+ +        Q       
Sbjct: 92  KQRERIVHISTGSTKFDKLL-RGGIETGGITEIFGEFRTGKSQICHTLAVTCQMNDARGR 150

Query: 94  TGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA 145
            GG C ++D E         ++           L+N+  ++    ++ +++        +
Sbjct: 151 PGGKCLYIDTEGTFRPERLSEIAKRFELGIEEVLENVSFARAYNVDEQMKLLVQACNLMS 210

Query: 146 VD---IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
            D   ++++DS  AL         +G      +   + + LR L          +V  NQ
Sbjct: 211 TDKYALLIVDSATALYR----TDYLGRGELSARQNHLGKFLRNLQRLADEFNVAVVITNQ 266

Query: 203 MRMKIGVMFGSP------ETTTGGNALKFYSSVRLDIRRVG------SIKDKDSITGNQT 250
           +  ++   + +       +   GGN +   S+ RL +R+         I D   +  ++ 
Sbjct: 267 VMSQVEGFYCTMMAMGDQKKPIGGNIMAHASTTRLYLRKGRGENRIVKIYDSPCLPESEE 326

Query: 251 RVKVVKNKMASP 262
           +  +    +   
Sbjct: 327 QYTISPGGIDDC 338


>gi|255722349|ref|XP_002546109.1| DNA repair protein RAD51 [Candida tropicalis MYA-3404]
 gi|240136598|gb|EER36151.1| DNA repair protein RAD51 [Candida tropicalis MYA-3404]
          Length = 364

 Score = 92.6 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 89/243 (36%), Gaps = 32/243 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  LG GG   G I E++G   +GK+ L        Q         G C +
Sbjct: 121 CLTTGSKQLDTLLG-GGIETGSITEVFGEFRTGKSQLCHTLAVTCQLPIDMGGGEGKCLY 179

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQA---LEITDMLVRSGAVDII 149
           +D E          +           L N+  ++    E     L I   ++      ++
Sbjct: 180 IDTEGTFRPNRLISIAERYGLNANDCLDNVAYARAYNAEHQLNLLNIAAQMMAESRFSLL 239

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DS+ +L          G      +   +++ +R L          +V  NQ+  ++  
Sbjct: 240 IVDSIMSLYR----TDYAGRGELSARQTHVARFMRTLQRLADEFGIAVVITNQVVAQVDG 295

Query: 209 ---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
              +    P+   GGN +   S+ RL ++      R+  I D   +  ++    + ++ +
Sbjct: 296 MAGMFNPDPKKPIGGNIIAHASTTRLSLKKGRAETRICKIYDSPCLPESECVFAIYEDGI 355

Query: 260 ASP 262
             P
Sbjct: 356 GDP 358


>gi|145614388|ref|XP_362387.2| hypothetical protein MGG_11350 [Magnaporthe oryzae 70-15]
 gi|145021318|gb|EDK05447.1| hypothetical protein MGG_11350 [Magnaporthe oryzae 70-15]
          Length = 780

 Score = 92.6 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 91/244 (37%), Gaps = 33/244 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  LG GG   G + E++G   +GK+ +        Q         G C +
Sbjct: 532 SITTGSKNLDTMLG-GGIETGSVTELFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLY 590

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     +    +           L N+  ++    +  L++      ++      ++
Sbjct: 591 IDTEGTFRPVRLLAVANRFGLSGEEVLDNVAYARAYNSDHQLQLLNQASAMMCETRFSLL 650

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DS  AL         +G      +   +++ +R+L          +V  NQ+  ++  
Sbjct: 651 IVDSATALYR----TDFLGRGELSSRQTHLAKFMRQLQRLADEFGIAVVISNQVVAQVDG 706

Query: 209 ----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               +    P+   GGN +   S+ RL ++      R+  I D   +  +     + ++ 
Sbjct: 707 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRIAKIYDSPCLPESDCLFAINEDG 766

Query: 259 MASP 262
           +  P
Sbjct: 767 IGDP 770


>gi|70995295|ref|XP_752407.1| DNA repair protein RAD51 [Aspergillus fumigatus Af293]
 gi|66850042|gb|EAL90369.1| DNA repair protein RAD51, putative [Aspergillus fumigatus Af293]
 gi|159131162|gb|EDP56275.1| DNA repair protein RAD51, putative [Aspergillus fumigatus A1163]
          Length = 348

 Score = 92.6 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 89/244 (36%), Gaps = 33/244 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  LG GG   G I EI+G   +GK+ +        Q         G C +
Sbjct: 102 SITTGSKQLDTLLG-GGIETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLY 160

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     +    +           L N+  ++    +  L++      ++      ++
Sbjct: 161 IDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 220

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           V+DS  +L          G      +   +++ +R L          +V  NQ+  ++  
Sbjct: 221 VVDSATSLYR----TDFNGRGELSSRQTHLAKFMRTLQRLADEFGIAVVITNQVVAQVDG 276

Query: 209 ----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               +    P+   GGN +   S+ RL ++      RV  I D   +  +     + ++ 
Sbjct: 277 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRVCKIYDSPCLPESDCLFAINEDG 336

Query: 259 MASP 262
           +  P
Sbjct: 337 IGDP 340


>gi|195505060|ref|XP_002099346.1| GE23416 [Drosophila yakuba]
 gi|194185447|gb|EDW99058.1| GE23416 [Drosophila yakuba]
          Length = 335

 Score = 92.6 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 87/259 (33%), Gaps = 33/259 (12%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----- 94
            +   +  +S+GS  LD  LG GG   G I EI+G    GKT L        Q       
Sbjct: 90  QMRADVVQLSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKG 148

Query: 95  -GGTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQALEITDM---LVR 142
             G C ++D E+         +           L N+  ++    +Q  ++  M   ++ 
Sbjct: 149 GEGKCMYIDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGMLF 208

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                ++++DS  AL         +G      +   +   LR L          +V  NQ
Sbjct: 209 ESRYALLIVDSAMALYR----SDYIGRGELAARQNHLGLFLRMLQRLADEFGVAVVITNQ 264

Query: 203 MRMKIG--VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           +   +         +   GG+ +   S+ RL +R+           G     K+  +   
Sbjct: 265 VTASLDGAPGMFDAKKPIGGHIMAHSSTTRLYLRKGK---------GETRICKIYDSPCL 315

Query: 261 SPFKQVEFDIMYGEGISFF 279
              + +   +  G G +  
Sbjct: 316 PESEAMFAILPDGIGDARE 334


>gi|258570189|ref|XP_002543898.1| DNA repair protein RAD51 [Uncinocarpus reesii 1704]
 gi|237904168|gb|EEP78569.1| DNA repair protein RAD51 [Uncinocarpus reesii 1704]
          Length = 348

 Score = 92.6 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 89/247 (36%), Gaps = 33/247 (13%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            +  +++GS  LD  L  GG   G I EI+G   +GK+ L        Q         G 
Sbjct: 98  DLICITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQLCHTLAVTCQLPFDMGGGEGK 156

Query: 98  CAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAV 146
           C ++D E     +    +           L N+  ++    +  L++      ++     
Sbjct: 157 CLYIDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRF 216

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++++DS  +L          G      +   +++ +R L          +V  NQ+  +
Sbjct: 217 SLLIVDSATSLYR----TDFSGRGELSSRQNHLARFMRTLQRLADEFGVAVVITNQVVAQ 272

Query: 207 IG-----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
           +      +    P+   GGN L   S+ RL ++      R+  I D   +  +     + 
Sbjct: 273 VDGGPSAMFNPDPKKPIGGNILAHASTTRLSLKKGRGETRICKIYDSPCLPESDCLFAIN 332

Query: 256 KNKMASP 262
           ++ +  P
Sbjct: 333 EDGIGDP 339


>gi|67521554|ref|XP_658841.1| hypothetical protein AN1237.2 [Aspergillus nidulans FGSC A4]
 gi|9904315|gb|AAB39323.2| ARECA [Emericella nidulans]
 gi|40746674|gb|EAA65830.1| hypothetical protein AN1237.2 [Aspergillus nidulans FGSC A4]
          Length = 344

 Score = 92.6 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 89/244 (36%), Gaps = 33/244 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  LG GG   G I EI+G   +GK+ +        Q         G C +
Sbjct: 98  SITTGSKQLDTLLG-GGIETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLY 156

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     +    +           L N+  ++    +  L++      ++      ++
Sbjct: 157 IDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 216

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           V+DS  +L          G      +   +++ +R L          +V  NQ+  ++  
Sbjct: 217 VVDSATSLYR----TDFNGRGELSTRQTHLAKFMRTLQRLADEFGIAVVITNQVVAQVDG 272

Query: 209 ----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               +    P+   GGN +   S+ RL ++      RV  I D   +  +     + ++ 
Sbjct: 273 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRVCKIYDSPCLPESDCLFAINEDG 332

Query: 259 MASP 262
           +  P
Sbjct: 333 IGDP 336


>gi|305663856|ref|YP_003860144.1| DNA repair and recombination protein RadA [Ignisphaera aggregans
           DSM 17230]
 gi|304378425|gb|ADM28264.1| DNA repair and recombination protein RadA [Ignisphaera aggregans
           DSM 17230]
          Length = 316

 Score = 92.6 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 93/240 (38%), Gaps = 31/240 (12%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGGT--- 97
            +  +++GS  LD  LG GG     I E++G   SGKT +        Q   + GG    
Sbjct: 79  SLPKITTGSKNLDTLLG-GGIEVKTITELFGEFGSGKTQICHQLAVNVQLPPEKGGLSKR 137

Query: 98  CAFVDAEHALDSIYARKLGVDL--------KNLLISQPDTGEQALEITD---MLVRSGAV 146
             ++D E          +   +        +N+L  +    +  + I +    ++    +
Sbjct: 138 AIYIDTEGTFRWERIEAMARAIGMNPDEAMENILYVRAVNSDHQMAIAEELKEIIPKENI 197

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++V+DS+     RAE  G        ++ + +++ L +L S        +V  NQ+  +
Sbjct: 198 GLVVVDSITGHF-RAEYPGREN---LAVRQQKLNRHLHQLMSIAELFDVAVVVTNQVMAR 253

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
             V +G P    GG+ L     +R+ +++           GN+   +VV        + V
Sbjct: 254 PDVFYGDPTVAIGGHVLYHAPGIRVQLKKSR---------GNRRIARVVDAPHLPESEAV 304


>gi|189210816|ref|XP_001941739.1| DNA repair protein RAD51 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|330918612|ref|XP_003298289.1| hypothetical protein PTT_08944 [Pyrenophora teres f. teres 0-1]
 gi|187977832|gb|EDU44458.1| DNA repair protein RAD51 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|311328605|gb|EFQ93618.1| hypothetical protein PTT_08944 [Pyrenophora teres f. teres 0-1]
          Length = 348

 Score = 92.2 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/293 (18%), Positives = 104/293 (35%), Gaps = 38/293 (12%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           ++  K ++    SK L  A   +   +     M      S    +  +++GS  LD  L 
Sbjct: 58  LEQIKGISEQKASKLLAEASKLVPMGFTTATEM-----HSRRSELISITTGSKQLDTLLA 112

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARK 114
            GG   G I EI+G   +GK+ +        Q         G C ++D E     +    
Sbjct: 113 -GGIETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRCLA 171

Query: 115 LGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEI 163
           +           L N+  ++    +  LE+      ++      ++V+DS  AL      
Sbjct: 172 VANRYGLSGEEVLDNVAYARAYNSDHQLELLNQAAQMMTETRFSLLVVDSATALYR---- 227

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG-----VMFGSPETTT 218
               G      +   +++ +R L          ++  NQ+  ++      +    P+   
Sbjct: 228 TDFAGRGELSARQTHLAKFMRTLQRLADEFGIAVIITNQVVAQVDGGPSAMFNPDPKKPI 287

Query: 219 GGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           GGN +   S+ RL +R      RV  I D   +  +     + ++ +  P ++
Sbjct: 288 GGNIIAHASTTRLSLRKGRGETRVCKIYDSPCLPESDCLFAINEDGIGDPKEK 340


>gi|147805615|emb|CAN71783.1| hypothetical protein VITISV_028799 [Vitis vinifera]
          Length = 348

 Score = 92.2 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 59/275 (21%), Positives = 96/275 (34%), Gaps = 38/275 (13%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K  EAA   +   Y  G+           + +  +++GS  LD  LG GG     I E 
Sbjct: 78  DKICEAAEKIVNFGYITGS-----DALLRRKSVVRITTGSQALDELLG-GGIETSAITEA 131

Query: 73  YGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDS--------IYARKLGVD 118
           +G   SGKT LA      +Q         G  A++D E              +    G  
Sbjct: 132 FGEFRSGKTQLAHTLCVSTQLPTSMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDAGAV 191

Query: 119 LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           L N++ ++  T E    +       +      ++++DSV AL          G      +
Sbjct: 192 LDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFR----VDFTGRGELADR 247

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKI--GVMFGSPETTTGGNALKFYSSVRLDI 233
            + ++Q L +LT         +   NQ+      GV    P+   GG+ L   +++RL  
Sbjct: 248 QQKLAQMLSRLTKIAEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAATIRLMF 307

Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           R+           G Q   KV         + + F
Sbjct: 308 RKGK---------GEQRVCKVFDAPNLPEAEAISF 333


>gi|119495909|ref|XP_001264730.1| DNA repair protein RAD51, putative [Neosartorya fischeri NRRL 181]
 gi|119412892|gb|EAW22833.1| DNA repair protein RAD51, putative [Neosartorya fischeri NRRL 181]
          Length = 348

 Score = 92.2 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 89/244 (36%), Gaps = 33/244 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  LG GG   G I EI+G   +GK+ +        Q         G C +
Sbjct: 102 SITTGSKQLDTLLG-GGIETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLY 160

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     +    +           L N+  ++    +  L++      ++      ++
Sbjct: 161 IDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 220

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           V+DS  +L          G      +   +++ +R L          +V  NQ+  ++  
Sbjct: 221 VVDSATSLYR----TDFNGRGELSSRQTHLAKFMRTLQRLADEFGIAVVITNQVVAQVDG 276

Query: 209 ----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               +    P+   GGN +   S+ RL ++      RV  I D   +  +     + ++ 
Sbjct: 277 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRVCKIYDSPCLPESDCLFAINEDG 336

Query: 259 MASP 262
           +  P
Sbjct: 337 IGDP 340


>gi|322780402|gb|EFZ09890.1| hypothetical protein SINV_00924 [Solenopsis invicta]
          Length = 310

 Score = 92.2 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 88/245 (35%), Gaps = 32/245 (13%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGT 97
            I  +++GS  LD  LG GG   G I E++G   SGK+ L        Q         G 
Sbjct: 68  NIVYITTGSKELDKLLG-GGIETGSITELFGEFRSGKSQLCHTLAVNCQLPISMGGAEGK 126

Query: 98  CAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQA---LEITDMLVRSGAV 146
           C ++D E+         +           L N+  ++    +     L +   ++     
Sbjct: 127 CLYIDTENTFRPERLIAVAEKYKINGPSVLDNVACARAYNTDHQTQLLMLASAMMTEARY 186

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++V+DS   L          G    G +   + + LR L          +V  NQ+  +
Sbjct: 187 ALLVVDSATGLYR----TDYSGRGELGARQNHLGRFLRMLLRLADEYGIAVVITNQVVAQ 242

Query: 207 IG----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVK 256
           +     +  G  +   GG+ L   S+ RL +R      R+  I D   +  ++    + +
Sbjct: 243 VDGAASMFGGDQKKPIGGHILAHSSTTRLYLRKGRGETRICKIYDSPCLPESEATFAINQ 302

Query: 257 NKMAS 261
           + +  
Sbjct: 303 DGIGD 307


>gi|1816461|emb|CAB02454.1| uvsC [Emericella nidulans]
 gi|259488442|tpe|CBF87878.1| TPA: UvsC protein [Source:UniProtKB/TrEMBL;Acc:P78579] [Aspergillus
           nidulans FGSC A4]
          Length = 348

 Score = 92.2 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 89/244 (36%), Gaps = 33/244 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  LG GG   G I EI+G   +GK+ +        Q         G C +
Sbjct: 102 SITTGSKQLDTLLG-GGIETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLY 160

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     +    +           L N+  ++    +  L++      ++      ++
Sbjct: 161 IDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 220

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           V+DS  +L          G      +   +++ +R L          +V  NQ+  ++  
Sbjct: 221 VVDSATSLYR----TDFNGRGELSTRQTHLAKFMRTLQRLADEFGIAVVITNQVVAQVDG 276

Query: 209 ----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               +    P+   GGN +   S+ RL ++      RV  I D   +  +     + ++ 
Sbjct: 277 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRVCKIYDSPCLPESDCLFAINEDG 336

Query: 259 MASP 262
           +  P
Sbjct: 337 IGDP 340


>gi|304315504|ref|YP_003850651.1| DNA repair and recombination protein RadA [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588963|gb|ADL59338.1| DNA repair and recombination protein RadA [Methanothermobacter
           marburgensis str. Marburg]
          Length = 311

 Score = 92.2 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 93/245 (37%), Gaps = 27/245 (11%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGG 96
              + +  +++GS  LD  +G GG     I E++G   SGK+ L+       Q   + GG
Sbjct: 71  ERRKDVGRITTGSKALDELIG-GGIETQAITEVFGEFGSGKSQLSHELAVTVQLPEERGG 129

Query: 97  T---CAFVDAEHALDSIYARK--------LGVDLKNLLISQPDTGEQALEITDML---VR 142
                 F+D E+        +        L   L  + I++       + + + +   ++
Sbjct: 130 LDAEAVFIDTENTFRPERIEQIANAFELDLEEVLNKIHIARAFNSSHQILMAEKVNELIQ 189

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
            G    +VI        RAE  G         + + ++Q L  L +  +     +   NQ
Sbjct: 190 EGKNIRLVIVDSLTAHFRAEYVGREA---LATRQQKLNQHLHTLQNIANTYNAAVFVTNQ 246

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDI------RRVGSIKDKDSITGNQTRVKVVK 256
           ++ +    FGSP    GG+ L   ++ RL +      +R+  + D   +   +   K+ +
Sbjct: 247 VQARPDAFFGSPTKAIGGHVLGHAATYRLWLKKGLAGKRIARLVDSPHLPEGECVFKITE 306

Query: 257 NKMAS 261
             +  
Sbjct: 307 AGIVD 311


>gi|403968|gb|AAB01016.1| Homology to Swiss-Prot Accession Number P17479, RecA protein
           [Mycoplasma genitalium]
          Length = 93

 Score = 92.2 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 52/88 (59%), Positives = 64/88 (72%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+GSL LD ALG GG P GRIVE+YG ESSGKTT+AL+ +A  QK G T  ++DA
Sbjct: 6   EIETISTGSLNLDEALGSGGLPLGRIVELYGNESSGKTTIALNAVASFQKAGKTACYIDA 65

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGE 131
           E ALD  YA+ +G+DL  LLI+ P  GE
Sbjct: 66  EGALDLAYAKSIGIDLNKLLIAHPRHGE 93


>gi|115491377|ref|XP_001210316.1| DNA repair protein RAD51 [Aspergillus terreus NIH2624]
 gi|114197176|gb|EAU38876.1| DNA repair protein RAD51 [Aspergillus terreus NIH2624]
          Length = 348

 Score = 92.2 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 89/244 (36%), Gaps = 33/244 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  LG GG   G I EI+G   +GK+ +        Q         G C +
Sbjct: 102 SITTGSKQLDTLLG-GGIETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLY 160

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     +    +           L N+  ++    +  L++      ++      ++
Sbjct: 161 IDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 220

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           V+DS  +L          G      +   +++ LR L          +V  NQ+  ++  
Sbjct: 221 VVDSATSLYR----TDFNGRGELSSRQTHLAKFLRTLQRLADEFGIAVVITNQVVAQVDG 276

Query: 209 ----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               +    P+   GGN +   S+ RL ++      RV  I D   +  +     + ++ 
Sbjct: 277 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRVCKIYDSPCLPESDCLFAINEDG 336

Query: 259 MASP 262
           +  P
Sbjct: 337 IGDP 340


>gi|77553662|gb|ABA96458.1| Meiotic recombination protein DMC1, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 442

 Score = 92.2 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 56/275 (20%), Positives = 98/275 (35%), Gaps = 38/275 (13%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K  EAA   + + +  G+           + +  +++GS  LD  LG GG     I E 
Sbjct: 78  DKICEAAEKLLSQGFITGS-----DLLIKRKSVVRITTGSQALDKLLG-GGIETLCITEA 131

Query: 73  YGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYA----RKLGVD---- 118
           +G   SGKT LA      +Q         G  A++D E             + G+D    
Sbjct: 132 FGEFRSGKTQLAHTLCVSAQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAV 191

Query: 119 LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           L N++ ++  T E    +       +      ++++DSV AL          G      +
Sbjct: 192 LDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAER 247

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE--TTTGGNALKFYSSVRLDI 233
            + ++Q L +LT         +   NQ+    G      +     GG+ L   +++RL +
Sbjct: 248 QQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDLKKPAGGHVLAHAATIRLML 307

Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           R+           G Q   K+         + + F
Sbjct: 308 RKGK---------GEQRVCKIFDAPNLPEGEAISF 333


>gi|7328532|dbj|BAA92869.1| Pprad51 [Penicillium paxilli]
          Length = 347

 Score = 92.2 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 94/247 (38%), Gaps = 33/247 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  LG GG   G I EI+G   +GK+ +        Q         G C +
Sbjct: 102 SITTGSKRLDTLLG-GGIETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLY 160

Query: 101 VDAEHALDSIY----ARKLG----VDLKNLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     +     A++ G      L N+  ++    +  L++      ++      ++
Sbjct: 161 IDTEGTFRPVRLLAVAQRFGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 220

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DS  AL          G      +   +++ LR L          +V  NQ+  ++  
Sbjct: 221 IVDSATALYR----TDFNGRGELSSRQTHLAKFLRTLQRLADEFGVAVVITNQVVAQVDG 276

Query: 209 ----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               +    P+   GGN +   S+ RL ++      RV  I D   +  +     + ++ 
Sbjct: 277 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRVCKIYDSPCLPESDCLFAINEDG 336

Query: 259 MASPFKQ 265
           +  P ++
Sbjct: 337 IGDPNEK 343


>gi|320591998|gb|EFX04437.1| DNA repair protein rad51 [Grosmannia clavigera kw1407]
          Length = 354

 Score = 92.2 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 88/244 (36%), Gaps = 33/244 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  LG GG   G I EI+G   +GK+ L        Q         G C +
Sbjct: 104 CITTGSKNLDTLLG-GGIETGSITEIFGEFRTGKSQLCHTLAVTCQLPFDCGGGEGKCLY 162

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E                      L N+ I++    +  L +      ++      ++
Sbjct: 163 IDTEGTFRPSRVLAAANRYGLSGEEVLDNIAIARAHNSDHQLALLRDAARMMAETRFSLL 222

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           VIDS  AL         MG      +   + Q LR+L S        +V  NQ+  ++  
Sbjct: 223 VIDSATALYR----TDYMGRGELNNRQMHLGQFLRQLQSMTDTYGIAVVITNQVVAQVDG 278

Query: 209 ----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               +    P+   GGN +   S+ R+ ++      R+  I D   +  +     +  + 
Sbjct: 279 GPSSMFNPDPKKPIGGNIIAHASTTRISLKKGRAETRIAKIYDSPCLPESDCMFAITADG 338

Query: 259 MASP 262
           +  P
Sbjct: 339 IGDP 342


>gi|220979961|emb|CAP72153.1| Putative recombinase recA [Escherichia coli LF82]
          Length = 779

 Score = 92.2 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 66/248 (26%), Positives = 111/248 (44%), Gaps = 29/248 (11%)

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK----NLLISQPDTGEQA 133
           S  T LA   +  +QK  G   F+D E++ D   A   G++        +  QPDT E +
Sbjct: 484 SHNTFLATAAMISAQKQDGLAVFLDHENSFDVGLAVANGLNADEDDGQWVYKQPDTFEDS 543

Query: 134 LEITDML---------VRSGAVDIIVIDSVAALTP--RAEIEGDMGESLPGMQ------- 175
           +E+   +         +   A   IV DS+A++ P  +AE    M E     +       
Sbjct: 544 VELIGTILKLVRDEELIPESAPICIVADSLASMVPNSKAEKFEKMAEGTAKDKDQLNMND 603

Query: 176 ----ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
               AR  S     L     +    ++F+NQ+R KIGVMFG P T+ GG++ KFY+SVR+
Sbjct: 604 NTALARATSANFPTLALWARKYNACIIFLNQVRTKIGVMFGDPTTSPGGDSPKFYASVRI 663

Query: 232 DIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG--EGISFFGELIDLGVKA 289
            +     +KD     G     + +KNK+A P+ +  +   +    G+     L++  ++ 
Sbjct: 664 RL-GASVMKDGKEKIGQDVGAECIKNKVAPPYGKCTWKFYFDPTRGLDVIESLVEYMLEE 722

Query: 290 SIVDKSGA 297
             + K+ +
Sbjct: 723 GYLPKNAS 730



 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 83/227 (36%), Gaps = 38/227 (16%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRI 69
             AL  AL +           ++GS   I +    + +G   L+ A+     GGFP GRI
Sbjct: 5   KSALALALKK-----------KIGSNDEIQKVTHWIDTGFPPLNKAISGRYDGGFPCGRI 53

Query: 70  VEIYGPESSGKT------------TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
           VE++GP S+GK              + +  + + +    TC   D EH +  I    +  
Sbjct: 54  VEVFGPPSAGKCVTADTMLLTERGMVTVKELFEIEGHKATCTTRDVEHNVGLINENGVIE 113

Query: 118 DLKNLLISQPDTGEQ-ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM-- 174
              +L  +     ++  L     +  +    I V+D +  +  R   +  +G+++P M  
Sbjct: 114 KTSHLTWNNRRKFKRIKLASGGYIEATFRHPIRVVDDLGNVVWRHAEKISVGDTIPSMVG 173

Query: 175 ----QARLMSQALRKLTSSIS-----RSKCILVFINQMRMKIGVMFG 212
                 + +   + KL   +       S+  + F N         + 
Sbjct: 174 THQFGDQHLDANIAKLMGYLIADGYVASENSVNFSNTDPFIKDEYYR 220


>gi|290559566|gb|EFD92895.1| DNA repair and recombination protein RadA [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 348

 Score = 92.2 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 99/247 (40%), Gaps = 29/247 (11%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------ 92
               + ++ +S+GS   +I LG GG     I E YG   SGK+ +A       Q      
Sbjct: 100 EDKRKSVQRISTGSEAFNILLG-GGVETQAITECYGEYGSGKSQMAFQLAVDVQLPVEKG 158

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQAL----EITDML 140
              G   ++D E         +L           L+N+ I +  + +  +    ++ +++
Sbjct: 159 GLDGHAIWIDTEGTFRPSRIEQLAASKGLDPKQALQNIKIGRAYSSDHQVLLVNKVPELV 218

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
                + +IV+DS+ AL  RAE  G         + + ++  L  L     R    +   
Sbjct: 219 NADPKIKLIVVDSMMALF-RAEYVGR---GTLADRQQKVNVVLHTLQRLADRFNIAVYIT 274

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKV 254
           NQ+  +  VMFG P    GG+ +   ++ R+ +R      RV  + D  S+   +   ++
Sbjct: 275 NQVMARPDVMFGDPTAAVGGHIIGHVATYRIYLRKGKKGSRVAKLVDSPSLPEGEASFEI 334

Query: 255 VKNKMAS 261
             N +A 
Sbjct: 335 TSNGIAD 341


>gi|261194837|ref|XP_002623823.1| DNA repair protein RAD51 [Ajellomyces dermatitidis SLH14081]
 gi|239588361|gb|EEQ71004.1| DNA repair protein RAD51 [Ajellomyces dermatitidis SLH14081]
 gi|239613363|gb|EEQ90350.1| DNA repair protein RAD51 [Ajellomyces dermatitidis ER-3]
 gi|327351860|gb|EGE80717.1| DNA repair protein RAD51 [Ajellomyces dermatitidis ATCC 18188]
          Length = 348

 Score = 92.2 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 91/250 (36%), Gaps = 33/250 (13%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              +  +++GS  LD  L  GG   G I EI+G   +GK+ +        Q         
Sbjct: 97  RNDLICITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGE 155

Query: 96  GTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSG 144
           G C ++D E     +    +           L N+  ++    +  L++      ++   
Sbjct: 156 GKCLYIDTEGTFRPVRLLAVAQRYGLVGEEVLDNIAYARAYNSDHQLQLLNQASQMMCET 215

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  AL          G      +   +++ +RKL +        +V  NQ+ 
Sbjct: 216 RFSLLIVDSATALYR----TDFSGRGELANRQNHLAKFMRKLRTLADEFGIAVVITNQVV 271

Query: 205 MKIG-----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVK 253
            ++      +    P+   GGN +   S+ RL +R      R+  I D   +  +     
Sbjct: 272 AQVDGGPSAMFNPDPKKPIGGNIIAHASTTRLSLRKGRGETRICKIYDSPCLPESDCLFA 331

Query: 254 VVKNKMASPF 263
           + ++ +  P 
Sbjct: 332 INEDGIGDPN 341


>gi|239502683|ref|ZP_04661993.1| RecA-like recombinase [Acinetobacter baumannii AB900]
          Length = 734

 Score = 92.2 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 70/305 (22%), Positives = 115/305 (37%), Gaps = 33/305 (10%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           G           + +G   L+ A+     GG P GRIVE+YGP SSGKT  A   + ++Q
Sbjct: 19  GDNEETQTVTNWLDTGDPELNFAISGRYDGGIPYGRIVEMYGPPSSGKTAEATDLMIRAQ 78

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ--PDTGEQALEIT---------DMLV 141
           + GG   F D E + D   A+ LG+  +        P+T E+   +             +
Sbjct: 79  EAGGIAMFFDWERSFDINLAKNLGLKTERPFWIYKKPETWEEGNVLAMRAVELIRNSATI 138

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGE---------SLPGMQARLMSQALRKLTSSISR 192
              A  I V DSVA+  P++    + G+         S     AR  S +L+ +  +  +
Sbjct: 139 PDDAPIICVFDSVASAIPQSVYYDNKGKKREIDTFNMSDNTALARASSTSLKVIAQTAEK 198

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN---- 248
                +++NQ R KIGVMFG P        + F       ++++   K    +       
Sbjct: 199 YNATFLYLNQQRTKIGVMFGDPTCLRAEVQVPFVDGTSATMKQIVDGKISKEVWSWNEVS 258

Query: 249 -----QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV-KASIVDKSGAWFSFK 302
                +  +    N       +  + I      +  G +   G     +  K   W +F 
Sbjct: 259 GQLEPKRIIGWHNNGSIKGTDKEWYHIRAVCPETRNGMVAVSGTNDHKVQVKDKGWINFS 318

Query: 303 GQRLG 307
             R+G
Sbjct: 319 DVRVG 323



 Score = 52.9 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 73/171 (42%), Gaps = 15/171 (8%)

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR---VGSIKDKDSITGNQTRVKVVKN 257
           N +       F     T GG++ ++Y+SVR+ + R   + ++  K    G     K+VK 
Sbjct: 567 NFLAGNTHNGFLVHNCTPGGSSFEYYASVRIALGRTKLMETVNGKKQFVGQDIATKIVKT 626

Query: 258 KMASPFKQVEFDIMYGE-G---ISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313
           K+  PF++    + + + G         L++      I+ +SGA+  +   +    + + 
Sbjct: 627 KLTKPFQETTMRMWFDKNGVAFFDRHYNLVEFLKAKGILKQSGAYIEWTDGK----KYHL 682

Query: 314 KIF---LRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361
           K     L+ +    + + +L+       AD +   P ++ +D+ +   +D+
Sbjct: 683 KSLCDKLKADPTGLQQLRALI-PKISPSADDIEVTPLMSNEDEMEALYSDD 732


>gi|70606517|ref|YP_255387.1| DNA repair and recombination protein RadA [Sulfolobus
           acidocaldarius DSM 639]
 gi|76363310|sp|Q4JAT5|RADA_SULAC RecName: Full=DNA repair and recombination protein radA
 gi|68567165|gb|AAY80094.1| DNA recombination protein RadA [Sulfolobus acidocaldarius DSM 639]
          Length = 321

 Score = 91.8 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 92/248 (37%), Gaps = 32/248 (12%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---- 92
                    + +++GS  LD  LG GG     + E +G   SGKT L        Q    
Sbjct: 75  EVKKERMNTKKITTGSQALDGLLG-GGIETRTMTEFFGEFGSGKTQLCHQISISVQLPQE 133

Query: 93  --KTGGTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQALEITD---- 138
                G   ++D E          +         + + N+   +    +  + I D    
Sbjct: 134 KGGLNGKAVYIDTEGTFRWERIEAMAKGAGLESDIAMNNIYYMRAINSDHQMAIVDDLQE 193

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           ++ +  A+ +I++DS+ +   RAE  G        ++ + +++ L +L          ++
Sbjct: 194 LITKDPAIKLIIVDSITSHF-RAEYPGREN---LAVRQQKLNKHLHQLVRLAEMYDIAVI 249

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
             NQ+  +  + +G P T  GG+ L     +R+ +++           GN+   ++V   
Sbjct: 250 ITNQVMARPDMFYGDPTTAVGGHTLYHVPGIRVQLKKSR---------GNKRIARIVDAP 300

Query: 259 MASPFKQV 266
                + V
Sbjct: 301 HLPEGEVV 308


>gi|170591324|ref|XP_001900420.1| Meiotic recombination protein DMC1/LIM15 homolog [Brugia malayi]
 gi|158592032|gb|EDP30634.1| Meiotic recombination protein DMC1/LIM15 homolog, putative [Brugia
           malayi]
          Length = 328

 Score = 91.8 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 89/244 (36%), Gaps = 34/244 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-------KTGGTCA 99
            +S+GS  LD  LG GG     I E++G   +GKT L+       Q         GG   
Sbjct: 87  RISTGSRDLDKLLG-GGIESQAITEVFGEFRTGKTQLSHTLCVMCQIASETSNFKGGKVI 145

Query: 100 FVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-----V 146
           ++D E+       R++           L N+L ++  T +  +E+ D +           
Sbjct: 146 YIDTENTFRPDRLRQINERFKMDQEAMLDNILYARAYTSDHQMELLDFVAAKFHEELGIF 205

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++++DS+ AL          G      + + ++Q L +L          +   NQM   
Sbjct: 206 KLLIVDSIMALFR----VDYSGRGELAERQQKLAQMLSRLQKIAEEYNVAVFITNQMTAD 261

Query: 207 I---GVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKN 257
                     P+   GG+ L   S+ R+ ++      R+  I D   +  N+    +   
Sbjct: 262 PGAGMTFQADPKKPVGGHILAHASTTRIMLKKGRGETRIAKIYDSPDLPENEATFAIATI 321

Query: 258 KMAS 261
            +  
Sbjct: 322 GITD 325


>gi|315258101|gb|ADT91638.1| recombinase A [Lactococcus lactis subsp. lactis]
          Length = 114

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 70/114 (61%), Positives = 93/114 (81%)

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA+ LGV++  LL+SQPD GEQ L+I + L+ SGAVD++VIDSVAAL P+AEI+G
Sbjct: 1   ALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAALVPKAEIDG 60

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           ++G+S  G+QAR+MSQA+RKL   I+++K   +FINQ+R K+GVMFGSPETT G
Sbjct: 61  EIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETTPG 114


>gi|260944444|ref|XP_002616520.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238850169|gb|EEQ39633.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 339

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 92/244 (37%), Gaps = 32/244 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  LG GG   G I E++G   +GK+ L        Q         G C +
Sbjct: 95  CLTTGSKQLDTLLG-GGVETGSITEVFGEFRTGKSQLCHTLAVTCQLPIDMGGGEGKCLY 153

Query: 101 VDAEHALDSIY----ARKLGVDLKNLLIS-------QPDTGEQALEITDMLVRSGAVDII 149
           +D E     +     A++ G++  + L +         +   Q L     ++      ++
Sbjct: 154 IDTEGTFRPVRLVSIAQRYGLNPDDCLDNVAYARAYNAEHQFQLLHQAAQMMSESRFSLL 213

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DS+ +L          G      +   +++ +R L          +V  NQ+  ++  
Sbjct: 214 IVDSIMSLYR----TDYSGRGELSARQTHVAKFMRTLQRLADEFGIAVVITNQVVAQVDG 269

Query: 209 ---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
              +    P+   GGN +   S+ RL  +      R+  I D   +  ++    + ++ +
Sbjct: 270 SAAMFNPDPKKPIGGNIIAHSSTTRLSFKKGRGEQRICKIYDSPCLPESECVFAIYEDGI 329

Query: 260 ASPF 263
             P 
Sbjct: 330 GDPK 333


>gi|328788487|ref|XP_624827.3| PREDICTED: DNA repair protein RAD51 homolog 1 [Apis mellifera]
          Length = 341

 Score = 91.4 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/275 (20%), Positives = 98/275 (35%), Gaps = 35/275 (12%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFE---GIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           EA   +I +   K  +M   S   I +    I  V++GS  LD  LG GG   G I EI+
Sbjct: 69  EAKADKILQEASKLVVMGFKSATEIHQTRSNIVFVTTGSSELDRLLG-GGIETGSITEIF 127

Query: 74  GPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKLGVD--------L 119
           G   SGKT L        Q         G C ++D E          +           L
Sbjct: 128 GEFRSGKTQLCHTLAVNCQLPIDMGGAEGKCLYIDTEGTFRPERLIAVAERYKIAGDSVL 187

Query: 120 KNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N+  ++    +   ++      ++      ++++DS   L  R E  G         + 
Sbjct: 188 DNVACARAYNTDHQTQLLIQASAMMTESRYALLIVDSATGLY-RTEYSGRGE---LAARQ 243

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIG----VMFGSPETTTGGNALKFYSSVRLD 232
             + + LR L          +V  NQ+  ++     +  G  +   GG+ +   S+ RL 
Sbjct: 244 MHLGRFLRMLLRLADEHGVAVVITNQVVAQVDGAASMFGGDQKKPIGGHIIAHASTTRLY 303

Query: 233 IR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
           +R      R+  I D   +  ++    +  + +  
Sbjct: 304 LRKGRGETRICKIYDSPCLPESEAMFAINADGIGD 338


>gi|15679382|ref|NP_276499.1| DNA repair and recombination protein RadA [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|3914551|sp|O27436|RADA_METTH RecName: Full=DNA repair and recombination protein radA
 gi|2622493|gb|AAB85860.1| DNA repair protein RadA [Methanothermobacter thermautotrophicus
           str. Delta H]
          Length = 311

 Score = 91.4 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 92/245 (37%), Gaps = 27/245 (11%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGG 96
              + +  +++GS  LD  +G GG     I E++G   SGK+ L+       Q   + GG
Sbjct: 71  ERRKDVGRITTGSKALDELIG-GGIETQAITEVFGEFGSGKSQLSHELAVTVQLPEERGG 129

Query: 97  T---CAFVDAEHALDSIYARK--------LGVDLKNLLISQPDTGEQALEITDML---VR 142
                 F+D E+        +        L   L  + I++       + + + +   ++
Sbjct: 130 LDAEAVFIDTENTFRPERIEQIANAFELDLEEVLNKIHIARAFNSSHQILMAEKVNELIQ 189

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
            G    +VI        RAE  G         + + ++Q L  L +  +     +   NQ
Sbjct: 190 EGKNIRLVIVDSLTAHFRAEYVGREA---LATRQQKLNQHLHTLQNIANTYNAAVFVTNQ 246

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDI------RRVGSIKDKDSITGNQTRVKVVK 256
           ++ +    FGSP    GG+ L   ++ R+ +      +R+  + D   +   +   K+  
Sbjct: 247 VQARPDAFFGSPTKAIGGHVLGHAATYRIWLKKGLAGKRIARLVDSPHLPEGECVFKITT 306

Query: 257 NKMAS 261
             +  
Sbjct: 307 AGIVD 311


>gi|330915672|ref|XP_003297116.1| hypothetical protein PTT_07429 [Pyrenophora teres f. teres 0-1]
 gi|311330355|gb|EFQ94774.1| hypothetical protein PTT_07429 [Pyrenophora teres f. teres 0-1]
          Length = 338

 Score = 91.4 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/253 (20%), Positives = 92/253 (36%), Gaps = 32/253 (12%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------ 92
           G   + +  +S+GS  LD  LG GGF    I E++G    GKT L+      +Q      
Sbjct: 90  GQQRKRVIKISTGSKALDAVLG-GGFQTMSISEVFGEFRCGKTQLSHTMSVITQLPKDMG 148

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDL--------KNLLISQPDTGEQALEITDM---LV 141
              G  A++D E         ++             N+  ++    E  +E+ +      
Sbjct: 149 GAEGKVAYIDTEGTFRPERIAQIAERFGVDPETAQDNITYARAVNSEHQMELLNKVAEFF 208

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
            S    +++IDS+ AL          G      + + ++Q L KLT         ++  N
Sbjct: 209 VSNEYRLLIIDSIMALFR----VDYTGRGELNERQQKLNQFLSKLTHVAEEFNVAVLLTN 264

Query: 202 QMRMKIGVM----FGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTR 251
           Q++   G              GG+ L   S+ R+ +R      RV  I+D   +   +  
Sbjct: 265 QVQSDPGASALFAGADGRKPVGGHILAHASATRILLRKGRGEERVAKIQDSPDMPEKEAT 324

Query: 252 VKVVKNKMASPFK 264
             +    +  P K
Sbjct: 325 YIITNGGINDPEK 337


>gi|307167464|gb|EFN61037.1| DNA repair protein RAD51-like protein 1 [Camponotus floridanus]
          Length = 340

 Score = 91.4 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 57/287 (19%), Positives = 102/287 (35%), Gaps = 43/287 (14%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFE---GIEVVSSGSLGLDIALGI 61
           K ++     K L+ A S+I        +M   S   I +    I  V++GS  LD  LG 
Sbjct: 64  KGISEAKADKLLQEA-SKI-------VMMGFKSATEIHQTRANIVYVTTGSKELDKLLG- 114

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKL 115
           GG   G I EI+G   SGK+ L        Q         G C ++D E+         +
Sbjct: 115 GGIETGSITEIFGEFRSGKSQLCHTLAVNCQLPICMGGAEGRCLYIDTENTFRPERLVAV 174

Query: 116 --------GVDLKNLLISQPDTGEQA---LEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
                      L N+  ++    +     L     ++      ++++DS  +L       
Sbjct: 175 AERYKISGSSVLDNVAYARAYNTDHQTQLLVQASAMMTEARYALLIVDSATSLYR----T 230

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG----VMFGSPETTTGG 220
              G      +   +++ LR L          +V  NQ+  ++     +  G  +   GG
Sbjct: 231 DYSGRGELNARQIHLARFLRMLLRLADEHGIAVVITNQVVAQVDGAASMFGGDQKKPIGG 290

Query: 221 NALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
           + L   S+ RL +R      R+  I D   +  ++    +  + +  
Sbjct: 291 HILAHSSTTRLYLRKGRGETRICKIYDSPCLPESEATFAINADGIGD 337


>gi|119173930|ref|XP_001239326.1| hypothetical protein CIMG_08947 [Coccidioides immitis RS]
          Length = 366

 Score = 91.4 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/290 (16%), Positives = 101/290 (34%), Gaps = 38/290 (13%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           ++  K ++    +K L  A   +   +     M      +    +  +++GS  LD  L 
Sbjct: 78  LEQIKGISEQKAAKILAEATKIVPMGFTTATEM-----HARRADLICITTGSRQLDTLLA 132

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDS----- 109
            GG   G I EI+G   +GK+ +        Q         G C ++D E          
Sbjct: 133 -GGVETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLLA 191

Query: 110 ---IYARKLGVDLKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEI 163
               Y       L N+  ++    +  L++      ++      ++V+DS  +L      
Sbjct: 192 VAQRYGLAGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLLVVDSATSLYR---- 247

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG-----VMFGSPETTT 218
               G      +   +++ +R L          +V  NQ+  ++      +    P+   
Sbjct: 248 TDFSGRGELSSRQTHLARFMRTLQRLADEFGVAVVITNQVVAQVEGGPSAMFNPDPKKPI 307

Query: 219 GGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMASP 262
           GGN +   S+ RL ++      R+  I D   +  +     + ++ +  P
Sbjct: 308 GGNIIAHASTTRLSLKKGRGETRICKIYDSPCLPESDCLFAINEDGIGDP 357


>gi|300603423|emb|CBN73205.1| recombinase A [Marichromatium sp. JA638]
          Length = 116

 Score = 91.4 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 81/107 (75%), Positives = 98/107 (91%)

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
             +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAALTP+AEIEG+M
Sbjct: 10  RPVYAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAALTPKAEIEGEM 69

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           G+S  G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMFGSP
Sbjct: 70  GDSHVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSP 116


>gi|68485285|ref|XP_713476.1| hypothetical protein CaO19.11236 [Candida albicans SC5314]
 gi|68485358|ref|XP_713440.1| hypothetical protein CaO19.3752 [Candida albicans SC5314]
 gi|46434928|gb|EAK94324.1| hypothetical protein CaO19.3752 [Candida albicans SC5314]
 gi|46434968|gb|EAK94361.1| hypothetical protein CaO19.11236 [Candida albicans SC5314]
 gi|238879694|gb|EEQ43332.1| DNA repair protein RAD51 [Candida albicans WO-1]
          Length = 361

 Score = 91.4 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 88/244 (36%), Gaps = 32/244 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  LG GG   G I E++G   +GK+ L        Q         G C +
Sbjct: 118 CLTTGSKQLDTLLG-GGVETGSITEVFGEFRTGKSQLCHTLAVTCQLPIDMGGGEGKCLY 176

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQA---LEITDMLVRSGAVDII 149
           +D E          +           L N+  ++    E     L I   ++      ++
Sbjct: 177 IDTEGTFRPNRLVSIAQRYGLNPNDCLDNVAYARAYNAEHQLNLLNIAAEMMAESRFSLL 236

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DS+ +L          G      +   +++ +R L          +V  NQ+  ++  
Sbjct: 237 IVDSIMSLYR----TDYAGRGELSARQTHVAKFMRTLQRLADEFGIAVVITNQVVAQVDG 292

Query: 209 ---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
              +    P+   GGN +   S+ RL  +      R+  I D   +  ++    + ++ +
Sbjct: 293 MSGMFNPDPKKPIGGNIIAHSSTTRLSFKKGRGETRICKIYDSPCLPESECIFAIYEDGI 352

Query: 260 ASPF 263
             P 
Sbjct: 353 GDPK 356


>gi|302660598|ref|XP_003021977.1| hypothetical protein TRV_03925 [Trichophyton verrucosum HKI 0517]
 gi|291185899|gb|EFE41359.1| hypothetical protein TRV_03925 [Trichophyton verrucosum HKI 0517]
          Length = 388

 Score = 91.4 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 89/247 (36%), Gaps = 33/247 (13%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            +  +++GS  LD  L  GG   G I E++G   +GK+ +        Q         G 
Sbjct: 138 DLICITTGSKQLDTLLA-GGIETGSITELFGEFRTGKSQICHTLAVTCQLPFDMGGGEGK 196

Query: 98  CAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAV 146
           C ++D E     +    +           L N+  ++    +  L++      ++     
Sbjct: 197 CLYIDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRF 256

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++++DS  +L          G      +   +++ +R L          +V  NQ+  +
Sbjct: 257 SLLIVDSATSLYR----TDFSGRGELSSRQNHLARFMRTLQRLADEFGVAVVITNQVVAQ 312

Query: 207 IG-----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
           +      +    P+   GGN +   S+ RL ++      R+  I D   +  +     + 
Sbjct: 313 VDGGPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRICKIYDSPCLPESDCLFAIN 372

Query: 256 KNKMASP 262
           ++ +  P
Sbjct: 373 EDGIGDP 379


>gi|302496969|ref|XP_003010485.1| hypothetical protein ARB_03186 [Arthroderma benhamiae CBS 112371]
 gi|291174028|gb|EFE29845.1| hypothetical protein ARB_03186 [Arthroderma benhamiae CBS 112371]
          Length = 257

 Score = 91.4 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 89/247 (36%), Gaps = 33/247 (13%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            +  +++GS  LD  L  GG   G I E++G   +GK+ +        Q         G 
Sbjct: 7   DLICITTGSKQLDTLLA-GGIETGSITELFGEFRTGKSQICHTLAVTCQLPFDMGGGEGK 65

Query: 98  CAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAV 146
           C ++D E     +    +           L N+  ++    +  L++      ++     
Sbjct: 66  CLYIDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRF 125

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++++DS  +L          G      +   +++ +R L          +V  NQ+  +
Sbjct: 126 SLLIVDSATSLYR----TDFSGRGELSSRQNHLARFMRTLQRLADEFGVAVVITNQVVAQ 181

Query: 207 IG-----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
           +      +    P+   GGN +   S+ RL ++      R+  I D   +  +     + 
Sbjct: 182 VDGGPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRICKIYDSPCLPESDCLFAIN 241

Query: 256 KNKMASP 262
           ++ +  P
Sbjct: 242 EDGIGDP 248


>gi|186966715|gb|ACC96219.1| recombinase A [Borrelia sp. QSYSP3]
          Length = 74

 Score = 91.4 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/73 (65%), Positives = 59/73 (80%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GS+ LD ALGIGG+P+GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +
Sbjct: 1   GSILLDEALGIGGYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPV 60

Query: 111 YARKLGVDLKNLL 123
           YA+ LGV++  L 
Sbjct: 61  YAKALGVNVAELW 73


>gi|312383584|gb|EFR28621.1| hypothetical protein AND_03252 [Anopheles darlingi]
          Length = 338

 Score = 91.4 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/283 (18%), Positives = 101/283 (35%), Gaps = 36/283 (12%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K ++     K L+ A   +   +                 I  +++GS  LD  LG GG 
Sbjct: 63  KGISEAKADKILQEATKHVPMGFTTAT-----EWHQKRSEIIQLTTGSKELDKLLG-GGI 116

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYA------ 112
             G I E++G   +GKT L        Q         G C ++D E              
Sbjct: 117 ETGSITEMFGEFRTGKTQLCHTLAVTCQLPVSQNGGEGKCLYIDTEGTFRPERLLATAER 176

Query: 113 -RKLGVDL-KNLLISQPDTGEQA---LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
            + +G D+  N+  ++    +     L +   ++      +I++DS  +L  R +  G  
Sbjct: 177 YKLVGTDVLDNVAYARAYNTDHQMQLLMLASAMMVESRYALIIVDSATSLY-RTDYCGRG 235

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG---VMFGSPETTTGGNALK 224
                  +   M++ LR L          ++  NQ+  ++    +    P+   GGN + 
Sbjct: 236 E---LAARQGHMAKFLRMLLRLADEFGVAVIITNQVVAQVDGAAMFNPDPKKPVGGNIIG 292

Query: 225 FYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
             S+ RL +R      R+  I D   +  ++    +  + +  
Sbjct: 293 HASTTRLYLRKGRGETRICKIYDSPCLPESEATFAINPDGVGD 335


>gi|297737116|emb|CBI26317.3| unnamed protein product [Vitis vinifera]
          Length = 348

 Score = 91.4 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 59/275 (21%), Positives = 96/275 (34%), Gaps = 38/275 (13%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K  EAA   +   Y  G+           + +  +++GS  LD  LG GG     I E 
Sbjct: 78  DKICEAAEKIVNFGYITGS-----DALLRRKSVVRITTGSQALDELLG-GGIETSAITEA 131

Query: 73  YGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDS--------IYARKLGVD 118
           +G   SGKT LA      +Q         G  A++D E              +    G  
Sbjct: 132 FGEFRSGKTQLAHTLCVSTQLPTSMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDAGAV 191

Query: 119 LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           L N++ ++  T E    +       +      ++++DSV AL          G      +
Sbjct: 192 LDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFR----VDFTGRGELADR 247

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKI--GVMFGSPETTTGGNALKFYSSVRLDI 233
            + ++Q L +LT         +   NQ+      GV    P+   GG+ L   +++RL  
Sbjct: 248 QQKLAQMLSRLTKIAEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAATIRLMF 307

Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           R+           G Q   KV         + + F
Sbjct: 308 RKGK---------GEQRVCKVFDAPNLPEAEAISF 333


>gi|315427207|dbj|BAJ48820.1| DNA repair protein RadA [Candidatus Caldiarchaeum subterraneum]
 gi|315427272|dbj|BAJ48884.1| DNA repair protein RadA [Candidatus Caldiarchaeum subterraneum]
          Length = 320

 Score = 91.4 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 88/216 (40%), Gaps = 23/216 (10%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------ 92
             I   I  +++GS  LD+ +G GG     I E +G   SGK+ L        Q      
Sbjct: 73  AEIKTNIGRITTGSTRLDLLIG-GGVETQAITEFFGEFGSGKSQLCHQLAVNVQLPVRRG 131

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQAL---EITDMLV 141
              G+  ++D E+         +           L+ ++ ++  T +  +   E  D ++
Sbjct: 132 GLDGSALYIDTENTFRPERVTSMANSLGLNADEVLERIIYAEAYTSDHQILLVEKADKII 191

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           +   V +I++DS+ +   R+E    +G  L   + + +++ + KL           V  N
Sbjct: 192 KEKNVKLIIVDSLTSHF-RSEY---LGRQLLPERQQKLNKHMHKLIRLCRAFNIAAVVTN 247

Query: 202 QMRMKIGVMFGSPET-TTGGNALKFYSSVRLDIRRV 236
           Q+  +   +F +      GG+ +   S  R+ +R+V
Sbjct: 248 QVMSRPDDIFSTMAVYPIGGHIVGHTSHNRVFLRKV 283


>gi|225432804|ref|XP_002279369.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 384

 Score = 91.4 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/269 (21%), Positives = 93/269 (34%), Gaps = 38/269 (14%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K  EAA   +   Y  G+           + +  +++GS  LD  LG GG     I E 
Sbjct: 78  DKICEAAEKIVNFGYITGS-----DALLRRKSVVRITTGSQALDELLG-GGIETSAITEA 131

Query: 73  YGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDS--------IYARKLGVD 118
           +G   SGKT LA      +Q         G  A++D E              +    G  
Sbjct: 132 FGEFRSGKTQLAHTLCVSTQLPTSMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDAGAV 191

Query: 119 LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           L N++ ++  T E    +       +      ++++DSV AL          G      +
Sbjct: 192 LDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFR----VDFTGRGELADR 247

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKI--GVMFGSPETTTGGNALKFYSSVRLDI 233
            + ++Q L +LT         +   NQ+      GV    P+   GG+ L   +++RL  
Sbjct: 248 QQKLAQMLSRLTKIAEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAATIRLMF 307

Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           R+           G Q   KV        
Sbjct: 308 RKGK---------GEQRVCKVFDAPNLPE 327


>gi|154424265|gb|ABS82018.1| recombinase A [Lactobacillus casei]
          Length = 105

 Score = 91.4 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 70/105 (66%), Positives = 87/105 (82%)

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
           T A++DAE+A+D  YA  LGV++  LL+SQPDTGEQ LEI D LV SGA+DI+VIDSVAA
Sbjct: 1   TAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAA 60

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           L PRAEIEGDMG++   +QARLMSQALRKL+ SI+++K I +FIN
Sbjct: 61  LVPRAEIEGDMGDAHVCLQARLMSQALRKLSGSINKTKTIALFIN 105


>gi|225559662|gb|EEH07944.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
 gi|325089671|gb|EGC42981.1| uvsC [Ajellomyces capsulatus H88]
          Length = 348

 Score = 91.4 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 89/249 (35%), Gaps = 33/249 (13%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              +  +++GS  LD  L  GG   G I EI+G   +GK+ +        Q         
Sbjct: 97  RNDLICITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGE 155

Query: 96  GTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQALEI---TDMLVRSG 144
           G C ++D E          +           L N+  ++    +  L++      ++   
Sbjct: 156 GKCLYIDTEGTFRPTRLLAVAQRYGLVGDEVLDNIAYARAYNSDHQLQLLNQASQMMCET 215

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  AL          G      +   +++ +RKL +        +V  NQ+ 
Sbjct: 216 RFSLLIVDSATALYR----TDFSGRGELSSRQNHLAKFMRKLRTLADEFGIAVVITNQVV 271

Query: 205 MKIG-----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVK 253
            ++      +    P+   GGN +   S+ RL ++      R+  I D   +  +     
Sbjct: 272 AQVDGGPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRICKIYDSPCLPESDCLFA 331

Query: 254 VVKNKMASP 262
           + +  +  P
Sbjct: 332 INEGGIGDP 340


>gi|312212267|emb|CBX92350.1| similar to DNA repair protein RAD51 homolog 1 [Leptosphaeria
           maculans]
          Length = 348

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/293 (17%), Positives = 103/293 (35%), Gaps = 38/293 (12%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           ++  K ++    SK L  A   +   +     M      S    +  +++GS  LD  L 
Sbjct: 58  LEQIKGISEQKASKLLAEASKLVPMGFTTATEM-----HSRRSELISITTGSKQLDTLLA 112

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARK 114
            GG   G I EI+G   +GK+ +        Q         G C ++D E     +    
Sbjct: 113 -GGIETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRCLA 171

Query: 115 LGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEI 163
           +           L N+  ++    +  LE+      ++      ++++DS  +L      
Sbjct: 172 VANRFGLSGEEVLDNVAYARAYNSDHQLELLNQAAQMMTETRFSLLIVDSATSLYR---- 227

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG-----VMFGSPETTT 218
               G      +   +++ +R L          +V  NQ+  ++      +    P+   
Sbjct: 228 TDFAGRGELSSRQTHLAKFMRTLQRLADEFGIAVVITNQVVAQVDGGPSAMFNPDPKKPI 287

Query: 219 GGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           GGN +   S+ RL +R      RV  I D   +  +     + ++ +  P  +
Sbjct: 288 GGNIIAHASTTRLSLRKGRGETRVCKIYDSPCLPESDCLFAINEDGIGDPKDK 340


>gi|300603354|emb|CBN08582.1| recombinase A [Marichromatium sp. JA350]
          Length = 103

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 78/103 (75%), Positives = 94/103 (91%)

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GGT AFVDAEHALD +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSV
Sbjct: 1   GGTAAFVDAEHALDPVYAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSV 60

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           AALTP+AEIEG+MG+S  G+QARLMSQALRKLT +I RS C++
Sbjct: 61  AALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCLV 103


>gi|145952326|gb|ABP98984.1| DMC1 [Hieracium caespitosum]
 gi|145952328|gb|ABP98985.1| DMC1 [Hieracium caespitosum]
          Length = 343

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 63/280 (22%), Positives = 100/280 (35%), Gaps = 39/280 (13%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K  EAA   +   Y  G+           + +  +++GS  LD  LG GG    +I E 
Sbjct: 77  DKICEAAEKIVNFGYITGS-----DALLRRKAVVRITTGSQALDELLG-GGIETLQITEA 130

Query: 73  YGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDS--------IYARKLGVD 118
           +G   SGKT LA      +Q         G  A++D E              +    G  
Sbjct: 131 FGEFRSGKTQLAHTLCVSTQLPTNMKGGNGKVAYIDTEGTFRPDRIVPIAERFGMDAGAV 190

Query: 119 LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           L N++ ++  T E    +       +      ++++DSV AL          G      +
Sbjct: 191 LDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFR----VDFTGRGELAER 246

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKI--GVMFGSPETTTGGNALKFYSSVRLDI 233
            + ++Q L +LT         +   NQ+      GV    P+   GG+ L   ++VRL  
Sbjct: 247 QQKLAQMLSRLTKIAEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAATVRLMF 306

Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           R+           G Q   K V +    P  +  F I  G
Sbjct: 307 RKGK---------GEQRVCK-VFDAPNLPESEAIFQITSG 336


>gi|145499122|ref|XP_001435547.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124402680|emb|CAK68150.1| unnamed protein product [Paramecium tetraurelia]
          Length = 337

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 90/249 (36%), Gaps = 31/249 (12%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK------ 93
              E I  +S+GS   D  L  GG   G I EI+G   +GK+ +        Q       
Sbjct: 92  KQRERIVHISTGSTKFDKLL-RGGIETGGITEIFGEFRTGKSQICHTLAVTCQMNDGKGR 150

Query: 94  TGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA 145
            GG C ++D E         ++           L+N+  ++    ++ +++        +
Sbjct: 151 PGGKCLYIDTEGTFRPERLSEIAKRFELGIEEVLENVSFARAYNVDEQMKLLIQACNLMS 210

Query: 146 VD---IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
            D   ++++DS  AL         +G      +   + + LR L          +V  NQ
Sbjct: 211 TDKYALLIVDSATALYR----TDYLGRGELSARQNHLGKFLRNLQRLADEFNVAVVITNQ 266

Query: 203 MRMKI---GVMFGSPETTTGGNALKFYSSVRLDIRRVG------SIKDKDSITGNQTRVK 253
           +  ++    +  G  +   GGN +   S+ RL +R+         I D   +  ++ +  
Sbjct: 267 VMSQVEGTMMAMGDQKKPIGGNIMAHASTTRLYLRKGRGENRIVKIYDSPCLPESEEQYT 326

Query: 254 VVKNKMASP 262
           +    +   
Sbjct: 327 ISPGGIDDC 335


>gi|186966718|gb|ACC96220.1| recombinase A [Borrelia sp. QLZSP1]
          Length = 74

 Score = 91.1 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/73 (65%), Positives = 59/73 (80%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GS+ LD ALGIGG+P+GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +
Sbjct: 1   GSIVLDEALGIGGYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPV 60

Query: 111 YARKLGVDLKNLL 123
           YA+ LGV++  L 
Sbjct: 61  YAKALGVNVAELW 73


>gi|327299920|ref|XP_003234653.1| DNA repair protein RAD51 [Trichophyton rubrum CBS 118892]
 gi|326463547|gb|EGD89000.1| DNA repair protein RAD51 [Trichophyton rubrum CBS 118892]
          Length = 349

 Score = 91.1 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 89/247 (36%), Gaps = 33/247 (13%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            +  +++GS  LD  L  GG   G I E++G   +GK+ +        Q         G 
Sbjct: 99  DLICITTGSKQLDTLLA-GGIETGSITELFGEFRTGKSQICHTLAVTCQLPFDMGGGEGK 157

Query: 98  CAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAV 146
           C ++D E     +    +           L N+  ++    +  L++      ++     
Sbjct: 158 CLYIDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRF 217

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++++DS  +L          G      +   +++ +R L          +V  NQ+  +
Sbjct: 218 SLLIVDSATSLYR----TDFSGRGELSSRQNHLARFMRTLQRLADEFGVAVVITNQVVAQ 273

Query: 207 IG-----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
           +      +    P+   GGN +   S+ RL ++      R+  I D   +  +     + 
Sbjct: 274 VDGGPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRICKIYDSPCLPESDCLFAIN 333

Query: 256 KNKMASP 262
           ++ +  P
Sbjct: 334 EDGIGDP 340


>gi|552007|gb|AAA26929.1| sequence derived from a PCR product [Streptococcus mutans]
          Length = 103

 Score = 91.1 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 66/103 (64%), Positives = 87/103 (84%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F+DAEHALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL P
Sbjct: 1   FIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           RAEI+GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FINQ
Sbjct: 61  RAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQ 103


>gi|302697701|ref|XP_003038529.1| hypothetical protein SCHCODRAFT_103780 [Schizophyllum commune H4-8]
 gi|300112226|gb|EFJ03627.1| hypothetical protein SCHCODRAFT_103780 [Schizophyllum commune H4-8]
          Length = 339

 Score = 91.1 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 91/245 (37%), Gaps = 32/245 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           +++GS  LD  LG GG   G I E++G   +GK+ L        Q         G C ++
Sbjct: 99  ITTGSKQLDALLG-GGIETGAITELFGEFRTGKSQLCHTLAVTCQLPVSMGGGEGKCLYI 157

Query: 102 DAEHALDSIY----ARKLGVD----LKNLLISQPDTGEQA---LEITDMLVRSGAVDIIV 150
           D E     +     A + G++    L N+  ++    +     L     L+      +++
Sbjct: 158 DTEGTFRPVRLLAVAERFGLNGEEVLDNVAYARAYNADHQNSLLTSASALMSESRFCLLI 217

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV- 209
           +DS  AL          G      +   + + LR L          +V  NQ+       
Sbjct: 218 VDSCTALYR----TDFSGRGELSSRQNHLGKFLRTLQRLADEFGIAVVVTNQVMSNPDAA 273

Query: 210 ---MFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMA 260
                G+ +   GGN +   S+ RL ++      R   I D   +   +T   ++++ + 
Sbjct: 274 AGPYAGNEKKPIGGNIMAHASTTRLQLKKARGNTRSCKIYDSPCLPEMETHFAILQSGIG 333

Query: 261 SPFKQ 265
            P ++
Sbjct: 334 DPEEE 338


>gi|303318132|ref|XP_003069067.1| DNA repair protein rhp51, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240108750|gb|EER26922.1| DNA repair protein rhp51, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|320037268|gb|EFW19206.1| DNA repair protein RAD51 [Coccidioides posadasii str. Silveira]
          Length = 348

 Score = 91.1 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/290 (16%), Positives = 101/290 (34%), Gaps = 38/290 (13%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           ++  K ++    +K L  A   +   +     M      +    +  +++GS  LD  L 
Sbjct: 60  LEQIKGISEQKAAKILAEATKIVPMGFTTATEM-----HARRADLICITTGSRQLDTLLA 114

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDS----- 109
            GG   G I EI+G   +GK+ +        Q         G C ++D E          
Sbjct: 115 -GGVETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLLA 173

Query: 110 ---IYARKLGVDLKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEI 163
               Y       L N+  ++    +  L++      ++      ++V+DS  +L      
Sbjct: 174 VAQRYGLAGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLLVVDSATSLYR---- 229

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG-----VMFGSPETTT 218
               G      +   +++ +R L          +V  NQ+  ++      +    P+   
Sbjct: 230 TDFSGRGELSSRQTHLARFMRTLQRLADEFGVAVVITNQVVAQVEGGPSAMFNPDPKKPI 289

Query: 219 GGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMASP 262
           GGN +   S+ RL ++      R+  I D   +  +     + ++ +  P
Sbjct: 290 GGNIIAHASTTRLSLKKGRGETRICKIYDSPCLPESDCLFAINEDGIGDP 339


>gi|226292806|gb|EEH48226.1| meiotic recombination protein DMC1 [Paracoccidioides brasiliensis
           Pb18]
          Length = 632

 Score = 91.1 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 56/263 (21%), Positives = 97/263 (36%), Gaps = 35/263 (13%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG Q    + +  +S+GS   D  L  GGF    I E+YG    GKT L+      +Q
Sbjct: 54  MELGHQ---RKRVVKISTGSKQFDSILA-GGFQSMSISEVYGEFRCGKTQLSHTMSVVAQ 109

Query: 93  ------KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITD 138
                    G  A++D E         ++           L+N+  ++    E  LE+ +
Sbjct: 110 LPKDMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELLN 169

Query: 139 MLVRSG---AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
            L +        +++IDS+     R +  G         + + ++Q L KL         
Sbjct: 170 TLSKEFAGSEYRLLIIDSIMNCF-RVDYCGRGE---LADRQQKLNQFLMKLAHMAEEFNV 225

Query: 196 ILVFINQMRMKIGVM----FGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
            ++  NQ++   G              GG+ L   S+ R+ +R      RV  I+D    
Sbjct: 226 CVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTRVLLRKGRGEERVAKIQDSPDC 285

Query: 246 TGNQTRVKVVKNKMASPFKQVEF 268
              +    +    +  P K  +F
Sbjct: 286 PEREATYVITNGGINDPDKNHKF 308


>gi|37956380|gb|AAP15364.1| RecA [Malonomonas rubra]
          Length = 114

 Score = 91.1 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 78/107 (72%), Positives = 96/107 (89%)

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA  LGV   +LL+SQPDTGEQALEIT+MLVRSGA+D++V+DSVAALTPRAE
Sbjct: 4   AEHALDIQYAGHLGVKADDLLVSQPDTGEQALEITEMLVRSGAIDVLVVDSVAALTPRAE 63

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           IEG+MG+S  G+QARLMSQALRKLT+++++S C ++FINQ+RMKIGV
Sbjct: 64  IEGEMGDSHMGLQARLMSQALRKLTATVAKSNCCIIFINQIRMKIGV 110


>gi|326476219|gb|EGE00229.1| DNA repair protein RAD51 [Trichophyton tonsurans CBS 112818]
 gi|326480838|gb|EGE04848.1| DNA repair protein RAD51 [Trichophyton equinum CBS 127.97]
          Length = 349

 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 89/247 (36%), Gaps = 33/247 (13%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            +  +++GS  LD  L  GG   G I E++G   +GK+ +        Q         G 
Sbjct: 99  DLICITTGSKQLDTLLA-GGIETGSITELFGEFRTGKSQICHTLAVTCQLPFDMGGGEGK 157

Query: 98  CAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAV 146
           C ++D E     +    +           L N+  ++    +  L++      ++     
Sbjct: 158 CLYIDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRF 217

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++++DS  +L          G      +   +++ +R L          +V  NQ+  +
Sbjct: 218 SLLIVDSATSLYR----TDFSGRGELSSRQNHLARFMRTLQRLADEFGVAVVITNQVVAQ 273

Query: 207 IG-----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
           +      +    P+   GGN +   S+ RL ++      R+  I D   +  +     + 
Sbjct: 274 VDGGPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRICKIYDSPCLPESDCLFAIN 333

Query: 256 KNKMASP 262
           ++ +  P
Sbjct: 334 EDGIGDP 340


>gi|66821233|ref|XP_644118.1| hypothetical protein DDB_G0274901 [Dictyostelium discoideum AX4]
 gi|60472390|gb|EAL70343.1| hypothetical protein DDB_G0274901 [Dictyostelium discoideum AX4]
          Length = 458

 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 96/188 (51%), Gaps = 21/188 (11%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG----- 96
           FE I  ++SG   LD  L IGG P   I+EIYG  S+GK+TL++  ++   K        
Sbjct: 79  FEKIPTITSGITSLDYQLQIGGLPLNHIIEIYGDSSTGKSTLSMFILSNLIKNNKSKQEQ 138

Query: 97  ---------------TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
                             ++D+E++ +S +A K+G++L N  + QP+  E+A E+    +
Sbjct: 139 RLSSSSSSLSSSQEENVLYIDSENSFNSEWASKIGMNLSNCTVFQPNNSEEAFELIKKSL 198

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESL-PGMQARLMSQALRKLTSSISRSKCILVFI 200
           ++    +I++DS+++L    +IE ++ E+    +    ++  L ++++ +  S C  +F 
Sbjct: 199 KNQIFKVIILDSLSSLMSIKDIESNLVENHYQNIGFDWITSNLNEISNLLIDSNCCFIFT 258

Query: 201 NQMRMKIG 208
           NQMR    
Sbjct: 259 NQMRYSFN 266


>gi|212542819|ref|XP_002151564.1| DNA repair protein RAD51, putative [Penicillium marneffei ATCC
           18224]
 gi|111380646|gb|ABH09700.1| RAD51-like protein [Penicillium marneffei]
 gi|210066471|gb|EEA20564.1| DNA repair protein RAD51, putative [Penicillium marneffei ATCC
           18224]
          Length = 349

 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 88/244 (36%), Gaps = 33/244 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  L  GG   G I EI+G   +GK+ L        Q         G C +
Sbjct: 103 SITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQLCHTLAVTCQLPFDMGGGEGKCLY 161

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     +    +           L N+  ++    +  L++      ++      ++
Sbjct: 162 IDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 221

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DS  AL          G      +   +++ LR L          +V  NQ+  ++  
Sbjct: 222 IVDSATALYR----TDFNGRGELSNRQTHLAKFLRTLQRLADEFGIAVVITNQVVSQVDG 277

Query: 209 ----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               +    P+   GGN +   S+ RL ++      R+  I D   +  +     + ++ 
Sbjct: 278 GPSSMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRICKIYDSPCLPESDCLFAIREDG 337

Query: 259 MASP 262
           +  P
Sbjct: 338 IGDP 341


>gi|37956384|gb|AAP15365.1| RecA [Pelobacter acidigallici]
          Length = 116

 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 78/108 (72%), Positives = 94/108 (87%)

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AEHALD  YA+ LGV   +LL+SQPDTGEQALEIT+MLVRSGA+D++V+DSVAALTPRA 
Sbjct: 6   AEHALDIQYAQHLGVKADDLLVSQPDTGEQALEITEMLVRSGAIDVLVVDSVAALTPRAG 65

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IEG+MG+S  G+QARLMSQALRKLT  +S+S C ++FINQ+RMKIG M
Sbjct: 66  IEGEMGDSHMGLQARLMSQALRKLTGIVSKSNCCIIFINQIRMKIGFM 113


>gi|310793292|gb|EFQ28753.1| hypothetical protein GLRG_03897 [Glomerella graminicola M1.001]
          Length = 350

 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 89/244 (36%), Gaps = 33/244 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  L  GG   G + E++G   +GK+ +        Q         G C +
Sbjct: 104 SITTGSKQLDTLLA-GGIETGSVTELFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLY 162

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     +    +           L N+  ++    +  L++      ++      ++
Sbjct: 163 IDTEGTFRPVRLLAVANRFGLSGEEVLDNVAYARAYNSDHQLQLLQQAGAMMCETRFSLL 222

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DS  AL         +G      +   +++ +R L          +V  NQ+  ++  
Sbjct: 223 IVDSATALYR----TDFLGRGELSSRQTHLAKFMRTLQRLADEFGIAVVITNQVVAQVDG 278

Query: 209 ----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               +    P+   GGN +   S+ R+ +R      RV  I D   +  +     + ++ 
Sbjct: 279 GPSAMFNPDPKKPVGGNIIAHASTTRISLRKGRAETRVAKIYDSPCLPESDCLFAINEDG 338

Query: 259 MASP 262
           +  P
Sbjct: 339 IGDP 342


>gi|332020430|gb|EGI60850.1| DNA repair protein RAD51-like protein 1 [Acromyrmex echinatior]
          Length = 340

 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 87/257 (33%), Gaps = 35/257 (13%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGT 97
            I  +++GS  LD  LG GG   G I EI+G   SGK+ L        Q         G 
Sbjct: 98  NIVYITTGSKELDKLLG-GGIETGSITEIFGEFRSGKSQLCHTLAVNCQLPISMGGAEGK 156

Query: 98  CAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQA---LEITDMLVRSGAV 146
           C ++D E+         +           L N+  ++    +     L +   ++     
Sbjct: 157 CLYIDTENTFRPERLIAVAEKYKINGQSVLDNVACARAFNTDHQTKLLLLASAMMTEARY 216

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++++DS   L  R +  G    S   +    + + LR L          +V  NQ+  +
Sbjct: 217 ALLIVDSATGLY-RTDYTGRGELSARQVH---LGRFLRMLLRLADEHGIAVVITNQVVAQ 272

Query: 207 IG----VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +     +  G  +   GG+ L   S+ RL +R+           G     KV  +     
Sbjct: 273 VDGAASMFGGDQKKPIGGHILAHSSTTRLYLRKGR---------GETRICKVYDSPCLPE 323

Query: 263 FKQVEFDIMYGEGISFF 279
            +        G G    
Sbjct: 324 SEATFAINPDGIGDVKE 340


>gi|254551791|ref|ZP_05142238.1| DNA recombination protein RecA [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
          Length = 75

 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 44/57 (77%)

Query: 283 IDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339
           ID+GV   ++ KSGAWF+++G++LGQG+EN++ FL EN ++A+ IE  +++  G+ A
Sbjct: 1   IDMGVDQGLIRKSGAWFTYEGEQLGQGKENARNFLVENADVADEIEKKIKEKLGIGA 57


>gi|13161942|emb|CAC32998.1| putative DMC1 protein [Pleurotus ostreatus]
 gi|13171056|emb|CAC33176.1| DMC1 homologue [Pleurotus ostreatus]
          Length = 347

 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 60/282 (21%), Positives = 104/282 (36%), Gaps = 38/282 (13%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K M+     K  EAA   +   +  G            + +  +S+GS  +D+ LG GG 
Sbjct: 72  KGMSEAKVEKIKEAAHKILGSSFATGI-----EIQEKRKRVNTISTGSKNVDVILG-GGI 125

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKLGVD 118
               + E+YG   +GKT LA      +Q         G  A++D E        R +   
Sbjct: 126 MSQSVSEVYGEFRTGKTQLAHTMSVVAQLPPDLGGASGKVAYIDTEGTFRPDRIRSIAER 185

Query: 119 --------LKNLLISQPDTGEQALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEGD 166
                   L+N+L ++    E  +E+ +      A D    ++++DS+ AL         
Sbjct: 186 FGVDGSLALENILYARAFNSEHQMELINECSMRFAEDKDFRLLIVDSIMALFR----VDY 241

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS----PETTTGGNA 222
            G      + + ++Q L +LT         ++  NQ++   G              GG+ 
Sbjct: 242 SGRGELSERQQKLAQMLSRLTKLSEEYNIAVLLTNQVQSDPGATMTFVAGGALKPIGGHI 301

Query: 223 LKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
           L   SS RL +R      RV  + D      ++   K+ +  
Sbjct: 302 LSHASSTRLFLRKGRAEERVAKLVDSPDRPESEASYKLDEGG 343


>gi|294471052|gb|ADE80787.1| recombinase A [Lactococcus piscium]
          Length = 107

 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 67/107 (62%), Positives = 89/107 (83%)

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            AF+DA HALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGA+D++VIDSVAAL
Sbjct: 1   AAFIDAXHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAIDLVVIDSVAAL 60

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            PRAEI+G++G+S  G+QAR+MSQA+RKL+SSI+++K I +FINQ+R
Sbjct: 61  VPRAEIDGEIGDSHVGLQARMMSQAMRKLSSSINKTKTIAIFINQLR 107


>gi|242767957|ref|XP_002341472.1| DNA repair protein RAD51, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218724668|gb|EED24085.1| DNA repair protein RAD51, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 349

 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 88/244 (36%), Gaps = 33/244 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  L  GG   G I EI+G   +GK+ L        Q         G C +
Sbjct: 103 SITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQLCHTLAVTCQLPFDMGGGEGKCLY 161

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     +    +           L N+  ++    +  L++      ++      ++
Sbjct: 162 IDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 221

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DS  AL          G      +   +++ LR L          +V  NQ+  ++  
Sbjct: 222 IVDSATALYR----TDFNGRGELSNRQTHLAKFLRTLQRLADEFGIAVVITNQVVSQVDG 277

Query: 209 ----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               +    P+   GGN +   S+ RL ++      R+  I D   +  +     + ++ 
Sbjct: 278 GPSSMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRICKIYDSPCLPESDCLFAIREDG 337

Query: 259 MASP 262
           +  P
Sbjct: 338 IGDP 341


>gi|84490269|ref|YP_448501.1| DNA repair and recombination protein RadA [Methanosphaera
           stadtmanae DSM 3091]
 gi|121731077|sp|Q2NE95|RADA_METST RecName: Full=DNA repair and recombination protein radA
 gi|84373588|gb|ABC57858.1| RadA [Methanosphaera stadtmanae DSM 3091]
          Length = 311

 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 100/246 (40%), Gaps = 29/246 (11%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
              E +  +++GS GLD  +G GG     I E+YG   SGK+ ++      +Q       
Sbjct: 71  ERREDVGRITTGSKGLDELIG-GGIETQSITEVYGEFGSGKSQISHELSVTTQLPVEEGG 129

Query: 94  TGGTCAFVDAEHALDSIYARKLG--------VDLKNLLISQPDTGEQAL----EITDMLV 141
             G   F+D E+        ++           LK + +++       +    +I +++ 
Sbjct: 130 LDGEVVFIDTENTFRPERIEQIAEGFGLNIEEVLKKIHVARAFNSSHQILMADKINELIQ 189

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
               + +I+IDS+ A   RAE  G         + + ++Q L  L +  +     ++  N
Sbjct: 190 SGVNIKLIIIDSLMAHF-RAEYVGR---ESLATRQQKLNQHLHTLQTIANTYNVAVLITN 245

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDI------RRVGSIKDKDSITGNQTRVKVV 255
           Q++ K    FG+P    GG+ L   S+ R+ +      +R+  + D   +   ++  KV 
Sbjct: 246 QVQSKPDSFFGTPTKAVGGHVLGHASTYRILLKKGLSGKRIARLVDSPHLPEGESVFKVT 305

Query: 256 KNKMAS 261
              +  
Sbjct: 306 TEGLVD 311


>gi|149246169|ref|XP_001527554.1| DNA repair protein RAD51 [Lodderomyces elongisporus NRRL YB-4239]
 gi|146447508|gb|EDK41896.1| DNA repair protein RAD51 [Lodderomyces elongisporus NRRL YB-4239]
          Length = 362

 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 88/244 (36%), Gaps = 32/244 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  LG GG   G I E++G   +GK+ L        Q         G C +
Sbjct: 120 CLTTGSKQLDTLLG-GGIETGSITEVFGEFRTGKSQLCHTLSVTCQLPIDMGGGEGKCLY 178

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQA---LEITDMLVRSGAVDII 149
           +D E          +           L N+  ++    E     L +   ++      ++
Sbjct: 179 IDTEGTFRPNRLVSIAERYGLNANDCLDNVAYARAYNAEHQLNLLNLAAEMMAESRFSLL 238

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DS+ +L          G      +   +++ +R L          +V  NQ+  ++  
Sbjct: 239 IVDSIMSLYR----TDYAGRGELSARQTSVAKFMRTLQRLADEFGIAVVITNQVVAQVDG 294

Query: 209 ---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
              +    P+   GGN +   S+ RL  +      R+  I D   +  ++    + ++ +
Sbjct: 295 MSGMYNPDPKKPIGGNIIAHSSTTRLSFKKGRAETRICKIYDSPCLPESECVFAIYEDGI 354

Query: 260 ASPF 263
             P 
Sbjct: 355 GDPK 358


>gi|213403772|ref|XP_002172658.1| DNA repair protein RAD51 [Schizosaccharomyces japonicus yFS275]
 gi|212000705|gb|EEB06365.1| DNA repair protein RAD51 [Schizosaccharomyces japonicus yFS275]
          Length = 370

 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 95/243 (39%), Gaps = 30/243 (12%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  L  GG   G I E++G   +GK+ +        Q         G C +
Sbjct: 127 TITTGSKQLDTLL-QGGVETGSITELFGEFRTGKSQICHTLAVTCQLPIDMGGGEGKCLY 185

Query: 101 VDAEHALDSIY----ARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDII 149
           +D E     +     A + G++    L N+  ++    +  LE+      ++      ++
Sbjct: 186 IDTEGTFRPVRLLAVAERYGLNGEEVLDNVAYARAYNADHQLELLQQAANMMAESRFSLL 245

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           V+DS  AL  R +  G    S   M    +++ +R L          +V  NQ+  ++  
Sbjct: 246 VVDSCTALY-RTDFSGRGELSARQMH---LARFMRTLQRLADEFGIAVVITNQVVAQVDG 301

Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
                 P+   GGN L   S+ RL +R      R+  + D   +  ++    +  + +  
Sbjct: 302 ISFNPDPKKPIGGNILAHSSTTRLSLRKGRGEQRICKVYDSPCLPESEAIFAINSDGIGD 361

Query: 262 PFK 264
           P +
Sbjct: 362 PKE 364


>gi|180050875|gb|ACB87051.1| RecA [Bacteriovorax sp. T9]
          Length = 112

 Score = 90.7 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 83/112 (74%), Positives = 96/112 (85%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
             +S+G LGLD+ LGIGG PKGRI+EIYGPESSGKTTL LH  A+ QK GGT AFVDAEH
Sbjct: 1   PAISTGCLGLDLGLGIGGVPKGRIIEIYGPESSGKTTLTLHIAAECQKEGGTVAFVDAEH 60

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           ALD++YA  LGVD+ N LISQPD+GEQALEI DMLVRSGAVD++++DSVAAL
Sbjct: 61  ALDTVYASNLGVDIPNTLISQPDSGEQALEIADMLVRSGAVDLLIVDSVAAL 112


>gi|315053028|ref|XP_003175888.1| DNA repair protein RAD51 [Arthroderma gypseum CBS 118893]
 gi|311341203|gb|EFR00406.1| DNA repair protein RAD51 [Arthroderma gypseum CBS 118893]
          Length = 349

 Score = 90.7 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 89/247 (36%), Gaps = 33/247 (13%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            +  +++GS  LD  L  GG   G I E++G   +GK+ +        Q         G 
Sbjct: 99  DLICITTGSKQLDTLLA-GGIETGSITELFGEFRTGKSQICHTLAVTCQLPFDMGGGEGK 157

Query: 98  CAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAV 146
           C ++D E     +    +           L N+  ++    +  L++      ++     
Sbjct: 158 CLYIDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRF 217

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++++DS  +L          G      +   +++ +R L          +V  NQ+  +
Sbjct: 218 SLLIVDSATSLYR----TDFSGRGELSSRQNHLARFMRTLQRLADEFGVAVVITNQVVAQ 273

Query: 207 IG-----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
           +      +    P+   GGN +   S+ RL ++      R+  I D   +  +     + 
Sbjct: 274 VDGGPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRICKIYDSPCLPESDCLFAIN 333

Query: 256 KNKMASP 262
           ++ +  P
Sbjct: 334 EDGIGDP 340


>gi|186966712|gb|ACC96218.1| recombinase A [Borrelia sp. QTMP2]
          Length = 74

 Score = 90.7 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/73 (65%), Positives = 59/73 (80%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           GS+ LD ALGIGG+P+GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +
Sbjct: 2   GSILLDEALGIGGYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPV 61

Query: 111 YARKLGVDLKNLL 123
           YA+ LGV++  L 
Sbjct: 62  YAKALGVNVAELW 74


>gi|312217982|emb|CBX97929.1| similar to meiotic recombination protein dmc1 [Leptosphaeria
           maculans]
          Length = 339

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 90/251 (35%), Gaps = 32/251 (12%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------ 92
           G   + +  +S+GS  LD  LG GGF    I E++G    GKT L+      +Q      
Sbjct: 91  GQHRKRVIRISTGSKALDAVLG-GGFQTMSISEVFGEFRCGKTQLSHTMSVIAQLPKDMG 149

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDL--------KNLLISQPDTGEQALEITDM---LV 141
              G  A++D E         ++             N+  ++    E  +E+ +      
Sbjct: 150 GADGKVAYIDTEGTFRPERIAQIAERFGVDPDAAQDNITYARAVNSEHQMELLNKVAEFF 209

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
                 +++IDS+ AL          G      + + ++Q L KLT         ++  N
Sbjct: 210 VGNEYRLLIIDSIMALFR----VDYTGRGELNERQQKLNQFLSKLTHVAEEFNVAVLLTN 265

Query: 202 QMRMKIGVM----FGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTR 251
           Q++   G              GG+ L   S+ R+ +R      RV  I+D   +   +  
Sbjct: 266 QVQSDPGASALFAGADGRKPVGGHILAHASATRILLRKGRGEERVAKIQDSPDMPEKEAT 325

Query: 252 VKVVKNKMASP 262
             +    +  P
Sbjct: 326 YIITNGGINDP 336


>gi|255940094|ref|XP_002560816.1| Pc16g04650 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585439|emb|CAP93135.1| Pc16g04650 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 344

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 88/244 (36%), Gaps = 33/244 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  LG GG   G I EI+G   +GK+ +        Q         G C +
Sbjct: 98  SITTGSKRLDTLLG-GGVETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLY 156

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     +    +           L N+  ++    +  L++      ++      ++
Sbjct: 157 IDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 216

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           V+DS  +L          G      +   +++ +R L          +V  NQ+  ++  
Sbjct: 217 VVDSATSLYR----TDFNGRGELASRQTHLAKFMRTLQRLADEFGIAVVITNQVVAQVDG 272

Query: 209 ----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               +    P+   GGN +   S+ RL ++      R+  I D   +        + ++ 
Sbjct: 273 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRICKIYDSPCLPEGDCLFAINEDG 332

Query: 259 MASP 262
           +  P
Sbjct: 333 IGDP 336


>gi|296815918|ref|XP_002848296.1| DNA repair protein RAD51 [Arthroderma otae CBS 113480]
 gi|238841321|gb|EEQ30983.1| DNA repair protein RAD51 [Arthroderma otae CBS 113480]
          Length = 350

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 89/247 (36%), Gaps = 33/247 (13%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            +  +++GS  LD  L  GG   G I E++G   +GK+ +        Q         G 
Sbjct: 100 DLICITTGSKQLDTLLA-GGIETGSITELFGEFRTGKSQICHTLAVTCQLPFDMGGGEGK 158

Query: 98  CAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAV 146
           C ++D E     +    +           L N+  ++    +  L++      ++     
Sbjct: 159 CLYIDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRF 218

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++++DS  +L          G      +   +++ +R L          +V  NQ+  +
Sbjct: 219 SLLIVDSATSLYR----TDFSGRGELSSRQNHLARFMRTLQRLADEFGVAVVITNQVVAQ 274

Query: 207 IG-----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
           +      +    P+   GGN +   S+ RL ++      R+  I D   +  +     + 
Sbjct: 275 VDGGPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRICKIYDSPCLPESDCLFAIN 334

Query: 256 KNKMASP 262
           ++ +  P
Sbjct: 335 EDGIGDP 341


>gi|194746120|ref|XP_001955532.1| GF16205 [Drosophila ananassae]
 gi|190628569|gb|EDV44093.1| GF16205 [Drosophila ananassae]
          Length = 334

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 88/262 (33%), Gaps = 35/262 (13%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----- 94
            +   +  +++GS  LD  LG GG   G I EI+G    GKT +        Q       
Sbjct: 87  EMRADVVQLTTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQICHTLAVTCQLPISQKG 145

Query: 95  -GGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDM---LVR 142
             G C ++D E+         +           L N+  S+    +Q  ++  M   ++ 
Sbjct: 146 GEGKCLYIDTENTFRPERLSAIAQRYKLNEAEVLDNVACSRAYNSDQQTKLIQMAAGMLF 205

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                ++++DS  AL         +G      +   +   LR L          +V  NQ
Sbjct: 206 ESRYAVVIVDSAMALYR----SDYIGRGELAARQNHLGLFLRMLQRLADEFGVAVVITNQ 261

Query: 203 MRMKIGVMFGS----PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           +   +    G      +   GG+ +   S+ RL +R+           G     K+  + 
Sbjct: 262 VTASVDAGPGMFAGDSKKPIGGHIMAHASTTRLYLRKGK---------GETRICKIYDSP 312

Query: 259 MASPFKQVEFDIMYGEGISFFG 280
                + +   +  G G +   
Sbjct: 313 CLPESEAMFAILPDGIGDAKEN 334


>gi|288931813|ref|YP_003435873.1| DNA repair and recombination protein RadA [Ferroglobus placidus DSM
           10642]
 gi|288894061|gb|ADC65598.1| DNA repair and recombination protein RadA [Ferroglobus placidus DSM
           10642]
          Length = 340

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 89/249 (35%), Gaps = 31/249 (12%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
              + I  +++GS  LD  LG GG     I E++G   SGKT +        Q       
Sbjct: 95  ERRKNIGKITTGSKALDDLLG-GGVETQAITELFGEFGSGKTQICHQLAVNVQLPKEKGG 153

Query: 94  TGGTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQAL-------EITD 138
             G    +D E         ++         V L+N+ ++Q       +       E+ +
Sbjct: 154 LNGVVVVIDTEGTFRPERIVQMAKAKDLDPDVALENIYVAQAYNSNHQMLLVDNAKELAN 213

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            L + G    +++        RAE    +G      + + +++ L  L          +V
Sbjct: 214 KLRKEGKHVRLLVVDSLTAHFRAEY---IGRGTLADRQQKLNRHLHDLLRFGELFNAAIV 270

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRV 252
             NQ+  K    FG P    GG+ +   ++ R+ +R      RV  + D   +   +   
Sbjct: 271 VTNQVMAKPDQFFGDPTKPVGGHIVAHTATFRVYLRKSKGELRVARLIDSPHLPEAEAVF 330

Query: 253 KVVKNKMAS 261
           K+ +  +  
Sbjct: 331 KITERGIED 339


>gi|219119366|ref|XP_002180445.1| Rad51 DNA recombination/repair protein [Phaeodactylum tricornutum
           CCAP 1055/1]
 gi|217407918|gb|EEC47853.1| Rad51 DNA recombination/repair protein [Phaeodactylum tricornutum
           CCAP 1055/1]
          Length = 350

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 97/255 (38%), Gaps = 36/255 (14%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAI--MQLGSQGSIFEG---IEVVSSGSLGLDIALG 60
           ++  + ++K L+  L +I +     ++  M   +     E    +  +++GS+ LD  L 
Sbjct: 74  DVKGISEAKVLK--LKEITK-----SMVPMDFKTAADALEDRKALVTLTTGSIELDKLL- 125

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK------TGGTCAFVDAEHALDSIYARK 114
            GG   G I E++G   +GKT L        Q         G   ++D E        + 
Sbjct: 126 EGGVETGSITEVFGEFRTGKTQLCHTLCVTCQMAVTEGGAEGKAIYIDTEGTFRPNRLQA 185

Query: 115 LGVD--------LKNLLISQPDTGEQA---LEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           +           L+N+  ++    E     L++   ++      ++V+DS  AL  R + 
Sbjct: 186 IAERFGLDPTVALENVAYARAHNSEHQAELLKLAAAIMSQDRYALLVVDSATALF-RTDY 244

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI--GVMFGSPETTTGGN 221
            G    S   MQ   M+Q LR+LT         +   NQ+                 GGN
Sbjct: 245 TGRGELSERQMQ---MAQFLRQLTRLAEEFGVAVFITNQVVANPDGMSFAKDSTKPIGGN 301

Query: 222 ALKFYSSVRLDIRRV 236
            +   S+ RL +R+ 
Sbjct: 302 IMAHASTTRLRLRKG 316


>gi|302413964|ref|XP_003004814.1| DNA repair protein RAD51 [Verticillium albo-atrum VaMs.102]
 gi|261355883|gb|EEY18311.1| DNA repair protein RAD51 [Verticillium albo-atrum VaMs.102]
          Length = 355

 Score = 90.3 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 89/244 (36%), Gaps = 33/244 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +S+GS  LD  L  GG   G I E++G   +GK+ +        Q         G C +
Sbjct: 108 SISTGSKQLDTLLA-GGIETGSITELFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLY 166

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     +    +           L N+  ++    +  L++      ++      ++
Sbjct: 167 IDTEGTFRPVRLLAVANRFGLSGEEVLDNVAYARAYNSDHQLQLLQQASAMMCETRFSLL 226

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DS  AL         +G      +   +++ LR L          +V  NQ+  ++  
Sbjct: 227 IVDSATALYR----TDFVGRGELSSRQTHLAKFLRTLQRLADEFGIAVVITNQVVAQVDG 282

Query: 209 ----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               +    P+   GGN +   S+ R+ ++      R+  I D   +  +     + ++ 
Sbjct: 283 GPSAMFNPDPKKPIGGNIIAHASTTRISLKKGRGETRIAKIYDSPCLPESDCLFAINEDG 342

Query: 259 MASP 262
           +  P
Sbjct: 343 IGDP 346


>gi|319411653|emb|CBQ73697.1| DNA repair protein RAD51 [Sporisorium reilianum]
          Length = 354

 Score = 90.3 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 57/271 (21%), Positives = 104/271 (38%), Gaps = 36/271 (13%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              +  +++GS  LD  LG GG   G I E+YG   +GK+ L        Q         
Sbjct: 96  RNELISITTGSKNLDAILG-GGMETGSITELYGEFRTGKSQLCHTLAVTCQLPVDMGGGE 154

Query: 96  GTCAFVDAEHALDSIY----ARKLGVD----LKNLLISQPDTGEQALEI---TDMLVRSG 144
           G C ++D E     +     A + G++    L N+  ++    +  L++      ++   
Sbjct: 155 GKCLYIDTEGTFRPVRLLAVAERYGLNGEEVLDNVAYARAYNADHQLQLLMQASAMMAES 214

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS+ +L  R +  G    S   M    +++ LR L          +V  NQ+ 
Sbjct: 215 RFSLLIVDSLTSLY-RTDFSGRGELSARQMH---LAKFLRGLMRLADEFGVAVVITNQVV 270

Query: 205 MKIG---VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
            ++          +   GGN +   S+ RL +R+           GNQ   + + +    
Sbjct: 271 AQVDGATAFTADAKKPIGGNIVAHASTTRLSLRKGR---------GNQRICR-IADSPCL 320

Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           P     F I   EGI     ++DL     ++
Sbjct: 321 PEADAVFSIG-PEGIIDPVSVLDLVRDLDLI 350


>gi|326483933|gb|EGE07943.1| Rad51 family protein [Trichophyton equinum CBS 127.97]
          Length = 356

 Score = 89.9 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 57/259 (22%), Positives = 96/259 (37%), Gaps = 35/259 (13%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG Q    + +  +S+GS   D  LG GGF    I E+YG    GKT L+      +Q
Sbjct: 105 MELGHQ---RKRVVKISTGSKQFDTILG-GGFQSMSISEVYGEFRCGKTQLSHTMSVIAQ 160

Query: 93  ------KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITD 138
                    G  A++D E         ++           L+N+  ++    E  LE+ +
Sbjct: 161 LPKDLGGAEGKAAYIDTEGTFRPERIAQIAERFGVDPDSALENISYARALNSEHQLELLN 220

Query: 139 ---MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
                  SG   +++IDS+     R +  G         + + ++Q L KL         
Sbjct: 221 TLAKEFASGEYRLLIIDSIMNCF-RVDYCGRGE---LADRQQKLNQFLMKLAHMAEEFNV 276

Query: 196 ILVFINQMRMKIGVM----FGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
            ++  NQ++   G              GG+ L   S+ R+ +R      RV  I+D    
Sbjct: 277 CVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTRVLLRKGRGDERVAKIQDSPDC 336

Query: 246 TGNQTRVKVVKNKMASPFK 264
              +    +    +  P K
Sbjct: 337 PEREATYVITNGGINDPEK 355


>gi|322372270|ref|ZP_08046811.1| DNA repair and recombination protein RadB [Haladaptatus
           paucihalophilus DX253]
 gi|320548279|gb|EFW89952.1| DNA repair and recombination protein RadB [Haladaptatus
           paucihalophilus DX253]
          Length = 232

 Score = 89.9 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 90/233 (38%), Gaps = 23/233 (9%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
               E +++G   +D  LG GG  +G + ++YGP ++GKT +AL    ++ + GGT  ++
Sbjct: 1   MTDAEKLTTGCPPVDDLLG-GGLERGTVTQVYGPPAAGKTNVALGATVETARDGGTVVYI 59

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPD--------TGEQALEITDMLVRSGAVDIIVIDS 153
           D E      + +       ++               GEQ   + D+   +   D++V+DS
Sbjct: 60  DTEGLSIDRFEQIAAARADDVDEVASRIVIKEALDFGEQQEAVKDVSEFAERADLVVLDS 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
                     +   G       AR ++     L S   +    ++  NQ+          
Sbjct: 120 ATGFYRLERGDDREGGEALRGVARQVTH----LLSLARKHDIAVLLTNQVYTDPDS---D 172

Query: 214 PETTTGGNALKFYSSVRLDI-------RRVGSIKDKDSITGNQTRVKVVKNKM 259
                GG+ L+ ++ V L +       RR    K +    G +T+ ++    +
Sbjct: 173 GTRPLGGHTLEHWTGVVLRVDRFRGGNRRATLEKHRSKPAGGRTQFRITDTGL 225


>gi|146102147|ref|XP_001469294.1| RAD51/dmc1 protein [Leishmania infantum]
 gi|134073663|emb|CAM72400.1| RAD51/dmc1 protein [Leishmania infantum JPCM5]
 gi|322503308|emb|CBZ38393.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 287

 Score = 89.9 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 60/275 (21%), Positives = 101/275 (36%), Gaps = 35/275 (12%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K +EAA    +  +  G+     S       I  +S+GS+ LD  LG GG     I E 
Sbjct: 19  DKIIEAARRVSEVGFITGS-----SCLQQRSTILRISTGSVALDQLLGGGGIESRSITEA 73

Query: 73  YGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYA----RKLGVD---- 118
           +G   +GKT +        Q         G   +VD E             + G+D    
Sbjct: 74  FGEFRTGKTQIGHTLCVTCQLPLEMGGGNGKAVYVDTEGTFRPERIRPIAERFGMDSNSV 133

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVD---IIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           L N+L+++  T E    +  M+    A D   ++V+DS+ AL          G      +
Sbjct: 134 LDNILVARAYTHEHQAHLLSMVAAKMAEDQFSLLVVDSITALFR----VDFSGRGELAER 189

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKI---GVMFGSPETTTGGNALKFYSSVRLD 232
            + +++ L +L          +   NQ+        +    P+   GG+ L   S+ RL 
Sbjct: 190 QQKLAKMLSQLMKIAEEFNIAVYITNQVVSDPGGASMFVADPKKPVGGHILAHASTTRLS 249

Query: 233 IR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
           +R      RV  I D  S+   +    + +  +  
Sbjct: 250 LRKGRGDQRVCKIFDSPSLPELECVYSISEQGIID 284


>gi|71028444|ref|XP_763865.1| DNA repair protein Rad51 [Theileria parva strain Muguga]
 gi|68350819|gb|EAN31582.1| DNA repair protein rad51, putative [Theileria parva]
          Length = 343

 Score = 89.9 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 86/248 (34%), Gaps = 31/248 (12%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----- 94
                +   ++GS  LD  L  GG   G I EI G   +GK+ L        Q       
Sbjct: 97  EARGNLIKFTTGSAQLDKLL-QGGVETGSITEIIGEFKTGKSQLCHTLAVTCQLPVEQSG 155

Query: 95  -GGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVR 142
             G C +VD+E          +           L N+  ++    +  LE+      ++ 
Sbjct: 156 GEGKCLWVDSEGTFRPERIVSIAKRFGLSPSDCLDNVAYARAYNTDHQLELLVEASAMMA 215

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                ++++DS  +L  R++  G    +   M      + LR L          +V  NQ
Sbjct: 216 QTRFALLIVDSATSLY-RSDYSGRGELASRQMHLC---KFLRALQRIADTFGVAVVITNQ 271

Query: 203 MRMKIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVK 253
           +  K+      FG+ +   GG+ +   S  RL +R      R+  I D   +   +    
Sbjct: 272 VVAKVDAMSTFFGNDKLPVGGHIIAHASQTRLFLRQSKGESRICKIYDSPVLPEGEAVFA 331

Query: 254 VVKNKMAS 261
           +    +  
Sbjct: 332 ITDGGIND 339


>gi|166714567|gb|ABY88025.1| RecA [Stenotrophomonas acidaminiphila]
          Length = 79

 Score = 89.9 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 56/79 (70%), Positives = 68/79 (86%)

Query: 220 GNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFF 279
           GNALKFY+SVRLDIRR+G+IK  D I GNQT++KVVKNK+A PFKQV  +I+YGEGIS  
Sbjct: 1   GNALKFYASVRLDIRRIGAIKKGDEIIGNQTKIKVVKNKLAPPFKQVVTEILYGEGISRE 60

Query: 280 GELIDLGVKASIVDKSGAW 298
           GELID+GV A +V+K+GAW
Sbjct: 61  GELIDMGVDAKLVEKAGAW 79


>gi|254166602|ref|ZP_04873456.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei
           T469]
 gi|254168555|ref|ZP_04875399.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei
           T469]
 gi|289596107|ref|YP_003482803.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei
           T469]
 gi|197622610|gb|EDY35181.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei
           T469]
 gi|197624212|gb|EDY36773.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei
           T469]
 gi|289533894|gb|ADD08241.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei
           T469]
          Length = 324

 Score = 89.9 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 97/243 (39%), Gaps = 28/243 (11%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
              + +  +++GS   D  LG GG     I E +G   SGKT +        Q       
Sbjct: 84  ERRKKVTKLTTGSSDFDTLLG-GGLETQAITEFFGEFGSGKTQIMHQLAVNVQLPKDKGG 142

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLK--------NLLISQPDTGEQALEITDMLVR--- 142
             G   ++D E+       +++   L+         + +++       + + D  +    
Sbjct: 143 LEGHAVYIDTENTFRPERIKQMAEALELDPVEVLKKIHVARAFNSNHQILLVDKAMELAK 202

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
              V ++++DS+ A   RAE  G         + +L+++ +  L      +  ++   NQ
Sbjct: 203 EYPVRLLIVDSLTAHF-RAEYVGR---GSLAERQQLLNKHMHDLLKFADLNNAVVAVTNQ 258

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVK 256
           +    G+MFG P    GGN +   ++ R+ +R      R+  + D  ++   +  +K+VK
Sbjct: 259 VSSNPGMMFGDPTQPIGGNIVGHTATYRIYLRKSRGNKRIARLIDSPALPDGEVVIKIVK 318

Query: 257 NKM 259
             +
Sbjct: 319 EGI 321


>gi|298713772|emb|CBJ27144.1| DNA repair and recombination protein Rad51A [Ectocarpus
           siliculosus]
          Length = 343

 Score = 89.9 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 92/247 (37%), Gaps = 30/247 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
            + +  +++GS  LD  L  GG   G + E++G   +GKT L        Q         
Sbjct: 101 RQDLITLTTGSKELDKLL-EGGIETGSLTEVFGEFRTGKTQLCHTLCVACQMPLDAGGGE 159

Query: 96  GTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQA---LEITDMLVRSG 144
           G   ++D E          +           L+N+  ++    EQ    L++   ++   
Sbjct: 160 GKAMYIDTEGTFRPQRLTAIAERFGLNGDDVLENVAYARAHNSEQQMDLLKMASAMMAED 219

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++VIDS  AL  R +  G    S   MQ   ++Q LR+LT         +V  NQ+ 
Sbjct: 220 RYALLVIDSATALY-RTDYCGRGELSERQMQ---LAQFLRQLTRMAEEFGVAVVLTNQVV 275

Query: 205 MKI--GVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVK 256
                           GGN +   S+ RL +R      R+  + D  ++  ++ +  +  
Sbjct: 276 ANPDGMSFAKDSTKPIGGNIIAHASTTRLRLRKARGDNRICQVFDSPTLAESECQFSIGP 335

Query: 257 NKMASPF 263
             +  P 
Sbjct: 336 VGVEDPK 342


>gi|312283561|dbj|BAJ34646.1| DNA recombinational repair protein [Magnaporthe oryzae]
          Length = 353

 Score = 89.9 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 91/244 (37%), Gaps = 33/244 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  LG GG   G + E++G   +GK+ +        Q         G C +
Sbjct: 105 SITTGSKNLDTMLG-GGIETGSVTELFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLY 163

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     +    +           L N+  ++    +  L++      ++      ++
Sbjct: 164 IDTEGTFRPVRLLAVANRFGLSGEEVLDNVAYARAYNSDHQLQLLNQASAMMCETRFSLL 223

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DS  AL         +G      +   +++ +R+L          +V  NQ+  ++  
Sbjct: 224 IVDSATALYR----TDFLGRGELSSRQTHLAKFMRQLQRLADEFGIAVVISNQVVAQVDG 279

Query: 209 ----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               +    P+   GGN +   S+ RL ++      R+  I D   +  +     + ++ 
Sbjct: 280 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRIAKIYDSPCLPESDCLFAINEDG 339

Query: 259 MASP 262
           +  P
Sbjct: 340 IGDP 343


>gi|169843884|ref|XP_001828666.1| Rah1 [Coprinopsis cinerea okayama7#130]
 gi|3237296|gb|AAC23703.1| Rah1 [Coprinopsis cinerea]
 gi|116510275|gb|EAU93170.1| Rah1 [Coprinopsis cinerea okayama7#130]
          Length = 343

 Score = 89.9 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 89/245 (36%), Gaps = 32/245 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           +++GS  LD  LG GG   G I E++G   +GK+ +        Q         G C ++
Sbjct: 103 ITTGSKQLDALLG-GGIETGAITELFGEFRTGKSQICHTLAVTCQLPVSMGGGEGKCLYI 161

Query: 102 DAEHALDSIY----ARKLGVD----LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIV 150
           D E     +     A + G++    L N+  ++    +    +      L+      +++
Sbjct: 162 DTEGTFRPVRLLAVAERFGLNGEEVLDNVAYARAYNADHQQALLTSASALMSESRFCLLI 221

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DS  AL          G      +   + + LR L          +V  NQ+       
Sbjct: 222 VDSCTALYR----TDFSGRGELSSRQTHLGKFLRTLQRLADEFGIAVVVTNQVMSTPDAA 277

Query: 211 FGSP----ETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMA 260
            G      +   GGN +   S+ RL ++      R   I D   +  ++T   ++   + 
Sbjct: 278 PGPYAGNEKKPIGGNIMAHASTTRLQLKKGRGNTRACKIYDSPCLPESETTFAILPGGIG 337

Query: 261 SPFKQ 265
            P ++
Sbjct: 338 DPEEE 342


>gi|34809805|pdb|1PZN|A Chain A, Rad51 (Rada)
 gi|34809806|pdb|1PZN|B Chain B, Rad51 (Rada)
 gi|34809807|pdb|1PZN|C Chain C, Rad51 (Rada)
 gi|34809808|pdb|1PZN|D Chain D, Rad51 (Rada)
 gi|34809809|pdb|1PZN|E Chain E, Rad51 (Rada)
 gi|34809810|pdb|1PZN|F Chain F, Rad51 (Rada)
 gi|34809811|pdb|1PZN|G Chain G, Rad51 (Rada)
          Length = 349

 Score = 89.5 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 92/230 (40%), Gaps = 27/230 (11%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G   +          I  +S+GS  LD  LG GG     I E++G   SGKT LA     
Sbjct: 95  GTFXRADEYLKKRATIGRISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLAHTLAV 153

Query: 90  QSQ------KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQAL- 134
             Q         G+  ++D E+       R++  +        LK++ +++         
Sbjct: 154 XVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQXL 213

Query: 135 -------EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
                  +I ++L     V ++++DS+ +   R+E    +G      + + +++ L  L 
Sbjct: 214 LVQQAEDKIKELLNTDRPVKLLIVDSLTSHF-RSEY---IGRGALAERQQKLAKHLADLH 269

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
              +     +   NQ++ +    FG P    GG+ L   +++R+ +R+  
Sbjct: 270 RLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGK 319


>gi|328875049|gb|EGG23414.1| putative DNA repair protein [Dictyostelium fasciculatum]
          Length = 359

 Score = 89.5 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 105/290 (36%), Gaps = 38/290 (13%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K ++     K +  A+   +  +   +++         + I  +++GS  LD  L  GGF
Sbjct: 84  KNISETKADKLIAEAMKIFKTGFTSASLV-----NQARKQIIHLTTGSKELDNLL-DGGF 137

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIY----ARK 114
             G I E++G   +GKT +        Q +       G   ++D E           A +
Sbjct: 138 EAGSITELFGEFRTGKTQICHTLCVTCQLSINQGGGEGRALYIDTEGTFRPERLLEIAER 197

Query: 115 LGVD----LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
            G+D    L N+  ++    +  L++      ++      ++++DS  AL          
Sbjct: 198 FGLDGESVLNNVAYARAYNTDHQLQLLVQASAMMSESRYSLLIVDSATALYR----TDYS 253

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE--TTTGGNALKF 225
           G S    + R +++ LR L         +++  NQ+   +     +       GG+ +  
Sbjct: 254 GRSELSDRQRHLARFLRGLQRLADEFGIVVIITNQVVATVDGSVFNANPIKPIGGHIIAH 313

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275
            S+ RL +R+           G     KV  +      ++      YG G
Sbjct: 314 ASTTRLSLRKGK---------GENRICKVYDSPSLPEEEKQFAIYGYGIG 354


>gi|255513422|gb|EET89688.1| DNA repair and recombination protein RadA [Candidatus Micrarchaeum
           acidiphilum ARMAN-2]
          Length = 316

 Score = 89.5 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 59/246 (23%), Positives = 105/246 (42%), Gaps = 28/246 (11%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---- 94
               + +  +S+ S  LD  +G GG     I E+YG  +SGKT LA      +Q      
Sbjct: 76  AEKRQALGKISTNSKDLDELIG-GGIEINAITEVYGKFASGKTQLAFQLAVNAQLPKDKG 134

Query: 95  --GGTCAFVDAEHALDSIYARKLG--------VDLKNLLISQPDTGEQAL---EITDMLV 141
              G   F+D E         ++           L+N+++ +  + E+ +   E  D L+
Sbjct: 135 GVDGKVLFIDTEGTFRPERIEEIAKAKGIDPKTALENIMVVRATSSEKQMLTIERADSLI 194

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           R   + +I+IDS+ AL  RAE    +G    G + + ++  + KL     +    +   N
Sbjct: 195 REKGIKLIIIDSLTALF-RAEF---LGRGALGERQQKLNSHMHKLQQLADKYDVAVYVTN 250

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK------DKDSITGNQTRVKVV 255
           Q+    G++FG P T  GGN +   +++RL IR+    K      D  ++   +  ++V 
Sbjct: 251 QVMDNPGILFGDPTTPIGGNIIAHAATLRLYIRKSKEDKRIIRLVDSPNMPDGECIIRVT 310

Query: 256 KNKMAS 261
              +  
Sbjct: 311 SAGIKD 316


>gi|154424263|gb|ABS82017.1| recombinase A [Lactobacillus casei]
 gi|154424267|gb|ABS82019.1| recombinase A [Lactobacillus casei]
          Length = 105

 Score = 89.5 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 71/105 (67%), Positives = 88/105 (83%)

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
           T A++DAE+A+D  YA  LGV++  LL+SQPDTGEQ LEI D LV SGA+DI+VIDSVAA
Sbjct: 1   TAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAA 60

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           L PRAEIEGDMG++  G+QARLMSQALRKL+ SI+++K I +FIN
Sbjct: 61  LVPRAEIEGDMGDAHVGLQARLMSQALRKLSGSINKTKTIALFIN 105


>gi|395377|emb|CAA80878.1| RecA-like protein [Schizosaccharomyces pombe]
          Length = 358

 Score = 89.5 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 91/243 (37%), Gaps = 30/243 (12%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  L  GG   G I E++G   +GK+ +        Q         G C +
Sbjct: 116 TITTGSKQLDTLL-QGGVETGSITELFGEFRTGKSQICHTLAVTCQLPIDMGGGEGKCLY 174

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDM---LVRSGAVDII 149
           +D E     +    +           L N+  ++    +  LE+      ++      ++
Sbjct: 175 IDTEGTFRPVRLLAVADRYGLNGEEVLDNVAYARAYNADHQLELLQQAANMMSESRFSLL 234

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           V+DS  AL  R +  G    S   M    +++ +R L          +V  NQ+  ++  
Sbjct: 235 VVDSCTALY-RTDFSGRGELSARQMH---LARFMRTLQRLADEFGIAVVITNQVVAQVDG 290

Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
                 P+   GGN L   S+ RL +R      R+  I D   +  ++    +  + +  
Sbjct: 291 ISFNPDPKKPIGGNILAHSSTTRLSLRKGRGEQRICKIYDSPCLPESEAIFAINSDGVGD 350

Query: 262 PFK 264
           P +
Sbjct: 351 PKE 353


>gi|112982765|ref|NP_001037552.1| Dmc1 homolog [Bombyx mori]
 gi|2058711|gb|AAB53331.1| Dmc1 homolog [Bombyx mori]
          Length = 341

 Score = 89.5 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 92/257 (35%), Gaps = 33/257 (12%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M         + +  +S+GS  LD  L  GG     I E++G   +GKT L+      +Q
Sbjct: 87  MTALEVSDRRKQVFKISTGSTELDKLLA-GGIESMAITEVFGEFRTGKTQLSHTLCVTTQ 145

Query: 93  ------KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITD 138
                   GG   F+D EH       R +           L N+L ++  T E   E+ D
Sbjct: 146 IPNSKGYQGGKVMFLDTEHTFRPDRLRPIADRFNLDQNAVLDNVLYARAYTSEHQAELLD 205

Query: 139 MLVRSGA-----VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
            +            +++IDS+ AL          G      + + ++Q L +L       
Sbjct: 206 YVAAKFHEEAGVFKLLIIDSIMALFR----VDFSGRGELADRQQKLAQVLSRLQKISEEY 261

Query: 194 KCILVFINQMRMKIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDS 244
              +   NQM    G        P+   GGN L   S+ R+ +R      R+  I D   
Sbjct: 262 NVAVFITNQMTADPGATLTFQADPKKPIGGNILAHASTTRISLRKGRGDNRIAKIYDSPD 321

Query: 245 ITGNQTRVKVVKNKMAS 261
           +  ++    +    +A 
Sbjct: 322 LPESEATFAITNGGVAD 338


>gi|195451479|ref|XP_002072940.1| GK13420 [Drosophila willistoni]
 gi|194169025|gb|EDW83926.1| GK13420 [Drosophila willistoni]
          Length = 355

 Score = 89.5 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 90/261 (34%), Gaps = 35/261 (13%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----- 94
            +   + ++++GS  LD  LG GG   G I EI+G    GKT L        Q       
Sbjct: 107 QMRSEVVMLTTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQNG 165

Query: 95  -GGTCAFVDAEHALDSIYARKLG--------VDLKNLLISQPDTGEQA---LEITDMLVR 142
             G C ++D E          +           L N+  ++    +Q    L +   ++ 
Sbjct: 166 GEGKCLYIDTEGTFRPERLSAIAQRYKMEEPDVLDNVAYARAYNSDQQTKLLHMAAGMMF 225

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                I+++DS  AL  R+E  G         +   +   LR L          +V  NQ
Sbjct: 226 ESRYAILIVDSAMALY-RSEYVGRGE---LAARQNHLGLFLRMLQRLADEFGVAVVITNQ 281

Query: 203 MRMKIG----VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           +   +     +     +   GG+ +   S+ RL +R+           G+    K+  + 
Sbjct: 282 VTASVDGGAGMFVADAKKPIGGHIMAHASTTRLYLRKGK---------GDSRICKIYDSP 332

Query: 259 MASPFKQVEFDIMYGEGISFF 279
                + +   +  G G +  
Sbjct: 333 CLPESEAIFAILGDGIGDARE 353


>gi|125578475|gb|EAZ19621.1| hypothetical protein OsJ_35197 [Oryza sativa Japonica Group]
          Length = 348

 Score = 89.5 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 56/275 (20%), Positives = 98/275 (35%), Gaps = 38/275 (13%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K  EAA   + + +  G+           + +  +++GS  LD  LG GG     I E 
Sbjct: 78  DKICEAAEKLLSQGFITGS-----DLLIKRKSVVRITTGSQALDKLLG-GGIETLCITEA 131

Query: 73  YGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYA----RKLGVD---- 118
           +G   SGKT LA      +Q         G  A++D E             + G+D    
Sbjct: 132 FGEFRSGKTQLAHTLCVSAQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAV 191

Query: 119 LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           L N++ ++  T E    +       +      ++++DSV AL          G      +
Sbjct: 192 LDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAER 247

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE--TTTGGNALKFYSSVRLDI 233
            + ++Q L +LT         +   NQ+    G      +     GG+ L   +++RL +
Sbjct: 248 QQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDLKKPAGGHVLAHAATIRLML 307

Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           R+           G Q   K+         + + F
Sbjct: 308 RKGK---------GEQRVCKIFDAPNLPEGEAISF 333


>gi|242019042|ref|XP_002429975.1| DNA repair protein rad51, putative [Pediculus humanus corporis]
 gi|212515030|gb|EEB17237.1| DNA repair protein rad51, putative [Pediculus humanus corporis]
          Length = 339

 Score = 89.5 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 31/240 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           +++GS  LD  LG GG   G I EI+G   +GKT L        Q         G C ++
Sbjct: 102 LTTGSKELDKLLG-GGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQNGGEGKCLYI 160

Query: 102 DAEHALDSI--------YARKLGVDLKNLLISQPDTGEQA---LEITDMLVRSGAVDIIV 150
           D E              +   L   L N+ +++    +     L +   ++      +++
Sbjct: 161 DTEGTFRPERLIAVAERFKLSLSDVLDNVAVARAYNTDHQTQLLLMASAMMSESRYALLI 220

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG-- 208
           IDS  AL  R +  G    S   M      +   +L          ++  NQ+  ++   
Sbjct: 221 IDSATALY-RTDYSGRGELSARQMHLARFLRMCLRL---ADEFGVAVILTNQVVAQVDCA 276

Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
            +    P+   GGN +   S+ RL +R      R+  I D   +  ++    +  + +  
Sbjct: 277 TMFAADPKKPVGGNIMAHSSTTRLYLRKGRGETRICKIYDSPCLPESEAMFAINSDGIGD 336


>gi|118082782|ref|XP_425477.2| PREDICTED: similar to Chain A, Crystal Structure Of The Human Dmc1
           Protein [Gallus gallus]
          Length = 342

 Score = 89.1 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 90/245 (36%), Gaps = 33/245 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +++GS   D  LG GG     I E +G   +GKT L+      +Q       TGG   F+
Sbjct: 103 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGPKGYTGGKIIFI 161

Query: 102 DAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-----VDI 148
           D E+       R +           L N+L ++  T E  +E+ D +            +
Sbjct: 162 DTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKL 221

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           ++IDS+ AL          G      + + ++Q L +L          +   NQM    G
Sbjct: 222 LIIDSIMALFR----VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPG 277

Query: 209 VMFG---SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
                   P+   GG+ L   S+ R+ +R      R+  I D   +  N+    +    +
Sbjct: 278 ATMTFQADPKKPVGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITPGGI 337

Query: 260 ASPFK 264
               K
Sbjct: 338 GDAKK 342


>gi|242389898|dbj|BAH80458.1| putative DMC1 protein [Lentinula edodes]
          Length = 346

 Score = 89.1 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 60/295 (20%), Positives = 108/295 (36%), Gaps = 42/295 (14%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K M+     K  EAA   +   +  G            + + V+S+GS  +D  LG GG 
Sbjct: 71  KGMSEAKVEKIKEAANKVLGSSFSTG-----VEVQDKGKRVLVISTGSKSVDAILG-GGI 124

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKL--- 115
               I E+YG   +GKT LA      +Q         G  A++D E        + +   
Sbjct: 125 MSQSISEVYGEFRTGKTQLAHTMSVAAQLPPDLGGASGKVAYIDTEGTFRPDRIKAIADR 184

Query: 116 -----GVDLKNLLISQPDTGEQALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEGD 166
                 + L+N+L ++    E  +E+ +      A D    ++++DS+ AL         
Sbjct: 185 FGVDGNMALENILYARAFNSEHQMELINECSLRFAEDKDFRLLIVDSIMALFR----VDY 240

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS----PETTTGGNA 222
            G      + + ++Q L KLT         ++  NQ++   G              GG+ 
Sbjct: 241 SGRGKLSERQQKLAQMLSKLTKLSEEYNICVLLTNQVQSDPGATMTFVAGGALKPIGGHI 300

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277
           L   S+ R+ +R+  +          + RV  + +    P  +  + +  G    
Sbjct: 301 LSHASATRMFLRKGRA----------EERVAKLVDSPGRPESEASYKLDEGGWAD 345


>gi|300176345|emb|CBK23656.2| unnamed protein product [Blastocystis hominis]
          Length = 316

 Score = 89.1 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 60/297 (20%), Positives = 100/297 (33%), Gaps = 45/297 (15%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K ++ V+  K   AA   I   +             + E I  +S+G   LD  LG GG 
Sbjct: 42  KGISEVNAQKLQAAASKLIPMGFTTAT-----EYSKLREDIVHISTGCKELDRILG-GGM 95

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKLGVD 118
             G I E+YG   +GKT +        Q         G   ++D E+        ++   
Sbjct: 96  ETGSITELYGEFRTGKTQMCHTLCVICQLPISQGGGEGKALYIDTENTFRPERLIQISKR 155

Query: 119 --------LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
                   L N+  ++    E   ++      L+      ++++DS  AL  R +  G  
Sbjct: 156 FGLNPDDVLDNVTYARAYNSEHQQQLLIQAAALMAESRYALVIVDSATALF-RTDYTGRG 214

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE--TTTGGNALKF 225
             S    + + ++Q LR L          +V  NQ+         + +     GGN +  
Sbjct: 215 ELST---RQQSLAQFLRGLQKLADEFGVAVVITNQVVANPDSGVFAKDPLKPIGGNIIAH 271

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
            S  RL  ++           G     KVV +      +          GIS  G +
Sbjct: 272 ASQTRLRFKKGR---------GTTRICKVVDSPCLGEEEASF-------GISDEGIV 312


>gi|289620542|emb|CBI52903.1| putative RAD51 protein [Sordaria macrospora]
          Length = 353

 Score = 89.1 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 89/244 (36%), Gaps = 33/244 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  L  GG   G + EI+G   +GK+ +        Q         G C +
Sbjct: 105 SITTGSKNLDTLLA-GGIETGSVTEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLY 163

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     +    +           L N+  ++    +  L++      ++      ++
Sbjct: 164 IDTEGTFRPVRLLAVANRYGLSGEEVLDNVAYARAYNSDHQLQLLNQAAAMMCETRFSLL 223

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DS  +L         +G      +   +++ +R L          +V  NQ+  ++  
Sbjct: 224 IVDSATSLYR----TDFLGRGELSSRQTHLAKFMRTLQRLADEFGIAVVITNQVVAQVDG 279

Query: 209 ----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               +    P+   GGN +   S+ R+ ++      R+  I D   +  +     + ++ 
Sbjct: 280 GPSAMFNPDPKKPIGGNIIAHASTTRISLKKGRGETRIAKIYDSPCLPESDCLFAIQEDG 339

Query: 259 MASP 262
           +  P
Sbjct: 340 IGDP 343


>gi|307596612|ref|YP_003902929.1| DNA repair and recombination protein RadA [Vulcanisaeta distributa
           DSM 14429]
 gi|307551813|gb|ADN51878.1| DNA repair and recombination protein RadA [Vulcanisaeta distributa
           DSM 14429]
          Length = 388

 Score = 89.1 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 96/248 (38%), Gaps = 32/248 (12%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGG 96
               GI  +S+G   LD  LG GG     I E+ G   SGKT L        Q     GG
Sbjct: 149 EKRRGIRRISTGVKSLDELLG-GGIETKAITELVGEFGSGKTQLCHQLSVMVQLPEDKGG 207

Query: 97  T---CAFVDAEHALDSIYARKLGV--------DLKNLLISQPDTGEQALEITD---MLVR 142
                 +VD E+        ++           LKN+L ++    +  + I +    ++ 
Sbjct: 208 LKAKALYVDTENTFRPERIMQMAKYRGLDPQEALKNILYARAYNSDHQMMIIEESKKIIE 267

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
              + +IVIDS+ A   R+E  G         + + ++  + +L          +V  NQ
Sbjct: 268 KENIGLIVIDSLVAHF-RSEYPGREN---LAERQQKLNHHIAQLLRIADIYNVAVVVTNQ 323

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +  +  V FG+P    GGN +   ++ R+ +R+               R+  + +    P
Sbjct: 324 VVAQPDVFFGNPLKPAGGNVIAHGATYRVWLRKGKE----------NVRIAKIFDSPYHP 373

Query: 263 FKQVEFDI 270
            ++V F I
Sbjct: 374 EREVTFRI 381


>gi|190338308|gb|AAI63218.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
           recombination (yeast) [Danio rerio]
          Length = 342

 Score = 89.1 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 89/242 (36%), Gaps = 33/242 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +++GSL  D  LG GG     I E +G   +GKT L+      +Q       TGG   F+
Sbjct: 103 ITTGSLEFDKLLG-GGVESMAITEAFGEFRTGKTQLSHTLCVTAQLPGEYGYTGGKVIFI 161

Query: 102 DAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-----VDI 148
           D E+       + +           L N+L ++  T E  +E+ D +            +
Sbjct: 162 DTENTFRPERLKDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDFVAAKFHEEGGVFKL 221

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI- 207
           ++IDS+ AL          G      + + ++Q L +L          +   NQM     
Sbjct: 222 LIIDSIMALFR----VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPG 277

Query: 208 --GVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
                   P+   GG+ L   S+ R+ +R      R+  I D   +  N+    +    +
Sbjct: 278 AGMTFQADPKKPIGGHILAHASTTRISLRKGRAELRIAKIFDSPHMPENEATFAITAGGI 337

Query: 260 AS 261
             
Sbjct: 338 TD 339


>gi|123408121|ref|XP_001303137.1| Meiotic recombination protein DMC1/LIM15 homolog [Trichomonas
           vaginalis G3]
 gi|121884492|gb|EAX90207.1| Meiotic recombination protein DMC1/LIM15 homolog, putative
           [Trichomonas vaginalis G3]
          Length = 338

 Score = 89.1 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 92/246 (37%), Gaps = 29/246 (11%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----- 94
                +  ++SGS  LD  LG GG     I E++G   +GKT L       +Q       
Sbjct: 95  KNRSKVIRITSGSTELDKLLG-GGVESMSITEVFGEFRTGKTQLCHTLCVTAQLPLSQSG 153

Query: 95  -GGTCAFVDAEHALDSIYA----RKLGVD----LKNLLISQPDTGEQALEITDMLVRSGA 145
             G   F+D E            ++ GVD    L+N+L ++  T EQ +++        A
Sbjct: 154 GQGKVCFIDTEGTFRPERIPVIAQRFGVDGDEALENILYARAFTHEQQMQLIQAAAAQMA 213

Query: 146 VD---IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
            D   +++IDS+ AL          G      + + + Q +  LT   S     +   NQ
Sbjct: 214 EDQYRLLIIDSITALFR----VDFSGRGELAERQQTLGQMMAALTKLASEFNIAIFITNQ 269

Query: 203 MRMKIGVM-FGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
           +        F       GG+ L   S+ RL +R      RV  I D  S+   +   ++ 
Sbjct: 270 VMASPDSALFVQAPKPIGGHILAHASTTRLYLRKGKGAERVAKIYDSPSLPEAEASYELS 329

Query: 256 KNKMAS 261
              +  
Sbjct: 330 DAGITD 335


>gi|281204720|gb|EFA78915.1| putative DNA repair protein [Polysphondylium pallidum PN500]
          Length = 350

 Score = 89.1 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 91/251 (36%), Gaps = 31/251 (12%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-- 94
              +  + I  + +GS  LD  L  GGF  G I EI+G   +GKT +        Q T  
Sbjct: 102 DFNTQRKQIVQIRTGSKELDSLL-EGGFETGSITEIFGEFRTGKTQICHTLCVTCQLTLA 160

Query: 95  ----GGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDM 139
                G   ++D E          +           L N+  ++    +  +++      
Sbjct: 161 QGGGEGRALYIDTEGTFRPERLLAIAERYNLNGEHVLDNVAYARAYNSDHQMQLLVQASA 220

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           ++      ++++DS  +L          G      + R +++ LR L          +V 
Sbjct: 221 MMSESRYILLIVDSATSLYR----TDYSGRGELSDRQRHLARFLRALQRLADEFGVAVVI 276

Query: 200 INQMRMKIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQT 250
            NQ+  ++    +   +P    GG+ +   S+ RL +R      R+  I D   +  ++ 
Sbjct: 277 TNQVVAQVDGGAMFNPNPNKPIGGHIMAHASTTRLSLRKGKGENRICKIYDSPCLPEDEK 336

Query: 251 RVKVVKNKMAS 261
           +  +  + +  
Sbjct: 337 QFAIYSDGIGD 347


>gi|156053229|ref|XP_001592541.1| DNA repair protein rhp51 [Sclerotinia sclerotiorum 1980]
 gi|154704560|gb|EDO04299.1| DNA repair protein rhp51 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 349

 Score = 89.1 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 91/244 (37%), Gaps = 33/244 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  L  GG   G + EI+G   +GK+ +        Q         G C +
Sbjct: 103 SITTGSKQLDTLLA-GGVETGSVTEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLY 161

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     +    +           L N+  ++    +  L++      ++      ++
Sbjct: 162 IDTEGTFRPVRLLAVANRYGLSGEEVLDNVAYARAYNSDHQLQLLNQAAQMMCETRFSLL 221

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DS  AL  R +  G    S   M    +++ +R L          +V  NQ+  ++  
Sbjct: 222 IVDSATALY-RTDFTGRGELSSRQMH---LAKFMRMLQRLADEFGIAVVITNQVVAQVDG 277

Query: 209 ----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               +    P+   GGN +   S+ RL ++      R+  I D   +  +     + ++ 
Sbjct: 278 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRICKIYDSPCLPESDCLFAINEDG 337

Query: 259 MASP 262
           +  P
Sbjct: 338 IGDP 341


>gi|300603358|emb|CBN08584.1| recombinase A [Marichromatium sp. JA328]
          Length = 116

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 80/107 (74%), Positives = 97/107 (90%)

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
              +A KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAALTP+AEIEG+M
Sbjct: 10  RPGHAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAALTPKAEIEGEM 69

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           G+S  G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMFGSP
Sbjct: 70  GDSHVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSP 116


>gi|84784026|gb|ABC61978.1| DMC1-like protein [Trichomonas vaginalis]
          Length = 338

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 92/246 (37%), Gaps = 29/246 (11%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----- 94
                +  ++SGS  LD  LG GG     I E++G   +GKT L       +Q       
Sbjct: 95  KNRSKVIRITSGSTELDKLLG-GGVESMSITEVFGEFRTGKTQLCHTLCVTAQLPLSQGG 153

Query: 95  -GGTCAFVDAEHALDSIYA----RKLGVD----LKNLLISQPDTGEQALEITDMLVRSGA 145
             G   F+D E            ++ GVD    L+N+L ++  T EQ +++        A
Sbjct: 154 GQGKVCFIDTEGTFRPERIPVIAQRFGVDGDEALENILYARAFTHEQQMQLIQAAAAQMA 213

Query: 146 VD---IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
            D   +++IDS+ AL          G      + + + Q +  LT   S     +   NQ
Sbjct: 214 EDQYRLLIIDSITALFR----VDFSGRGELAERQQTLGQMMAALTKLASEFNIAIFITNQ 269

Query: 203 MRMKIGVM-FGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
           +        F       GG+ L   S+ RL +R      RV  I D  S+   +   ++ 
Sbjct: 270 VMASPDSALFVQAPKPIGGHILAHASTTRLYLRKGKGAERVAKIYDSPSLPEAEASYELS 329

Query: 256 KNKMAS 261
              +  
Sbjct: 330 DAGITD 335


>gi|162605684|ref|XP_001713357.1| DNA repair protein Rad51 homolog [Guillardia theta]
 gi|13794289|gb|AAK39666.1|AF083031_23 DNA repair protein Rad51 homolog [Guillardia theta]
          Length = 331

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 89/248 (35%), Gaps = 31/248 (12%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----- 94
            I + +  ++SGS  LD  LG GG   G I E++G   +GKT L        Q +     
Sbjct: 86  KIRQDLIYLTSGSKELDKILG-GGIETGSITEVFGEFRTGKTQLCHTLCVTCQLSVSKGG 144

Query: 95  -GGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVR 142
             G   ++D E          +           L N+  ++    +  LE+      L+ 
Sbjct: 145 GEGRALYIDTEGTFRPERIVSIADRFNLNRQDVLDNIAYARAYNTDHQLELLNQASALMS 204

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                ++VIDS  +L          G      + + M++ LR L          ++  NQ
Sbjct: 205 ESRYALLVIDSATSLYR----TDYTGRGELASRQQHMARFLRSLQRLADEFGVAVLITNQ 260

Query: 203 MRMKIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVK 253
           +  ++         P+   GGN +   S  RL ++      R+  I D  ++   +    
Sbjct: 261 VIAQVDGNSSFMTDPKKPVGGNIVAHASQTRLYLKKGKGVNRICKIYDSPNLPNGECLFS 320

Query: 254 VVKNKMAS 261
           + +  +  
Sbjct: 321 ISEAGIGD 328


>gi|551851|gb|AAA24782.1| sequence derived from a PCR product [Enterococcus faecalis]
          Length = 102

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 72/102 (70%), Positives = 86/102 (84%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F+DAEHALD  YA KLGV++  LL+SQPDTGEQ LEI D LV SGA+DI+VIDSVAAL P
Sbjct: 1   FIDAEHALDPQYAEKLGVNIDELLLSQPDTGEQGLEIADALVSSGAIDIVVIDSVAALVP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RAEI+G+MG S  G+QARLMSQALRKL+ SI+++K I +FIN
Sbjct: 61  RAEIDGEMGASHVGLQARLMSQALRKLSGSINKTKTIAIFIN 102


>gi|90112019|gb|AAI14234.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
           recombination (yeast) [Danio rerio]
          Length = 342

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 89/242 (36%), Gaps = 33/242 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +++GSL  D  LG GG     I E +G   +GKT L+      +Q       TGG   F+
Sbjct: 103 ITTGSLEFDKLLG-GGVESMAITEAFGEFRTGKTQLSHTLCVTAQLPGEFGYTGGKVIFI 161

Query: 102 DAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-----VDI 148
           D E+       + +           L N+L ++  T E  +E+ D +            +
Sbjct: 162 DTENTFRPERLKDIADRFNVDHEAVLDNVLYARAYTSEHQMELLDFVAAKFHEEGGVFKL 221

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI- 207
           ++IDS+ AL          G      + + ++Q L +L          +   NQM     
Sbjct: 222 LIIDSIMALFR----VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPG 277

Query: 208 --GVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
                   P+   GG+ L   S+ R+ +R      R+  I D   +  N+    +    +
Sbjct: 278 AGMTFQADPKKPIGGHILAHASTTRISLRKGRAELRIAKIFDSPHMPENEATFAITAGGI 337

Query: 260 AS 261
             
Sbjct: 338 TD 339


>gi|66472867|ref|NP_001018618.1| meiotic recombination protein DMC1/LIM15 homolog [Danio rerio]
 gi|63852092|dbj|BAD98462.1| RecA homolog Dmc1 [Danio rerio]
          Length = 342

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 90/242 (37%), Gaps = 33/242 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +++GSL  D  LG GG     I E +G   +GKT L+      +Q       TGG   F+
Sbjct: 103 ITTGSLEFDKLLG-GGVESMAITEAFGEFRTGKTQLSHTLCVTAQLPGEYGYTGGKVIFI 161

Query: 102 DAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-----VDI 148
           D E+       + +           L N+L ++  T E  +E+ D +            +
Sbjct: 162 DTENTFRPERLKDIADRFNVDHEAVLDNVLYARAYTSEHQMELLDFVAAKFHEEGGVFKL 221

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           ++IDS+ AL          G      + + ++Q L +L          +   NQM    G
Sbjct: 222 LIIDSIMALFR----VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPG 277

Query: 209 VMFG---SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
                   P+   GG+ L   S+ R+ +R      R+  I D   +  N+    +    +
Sbjct: 278 AGMTFQADPKKPIGGHILAHASTTRISLRKGRAELRIAKIFDSPHMPENEATFAITAGGI 337

Query: 260 AS 261
             
Sbjct: 338 TD 339


>gi|193603671|ref|XP_001948893.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Acyrthosiphon
           pisum]
          Length = 340

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/283 (18%), Positives = 97/283 (34%), Gaps = 36/283 (12%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K ++     K L  A   +   +    I  L         I  +++GS  LD  LG GG 
Sbjct: 65  KGISEAKADKILAEASKMVPLGFTSATIFHL-----KRSEIIQLTTGSKELDRLLG-GGI 118

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKL--- 115
             G I EI+G   +GKT L        Q         G C ++D E          +   
Sbjct: 119 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIGQNGGEGKCLYIDTEGTFRPERLLSVAER 178

Query: 116 -----GVDLKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
                   L N+  ++    +   ++      ++      ++++DS  AL          
Sbjct: 179 YQLVGSDVLDNIACARAYNTDHQTQLLLQAGAMMAESRYALLIVDSAMALYR----TDYS 234

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG---VMFGSPETTTGGNALK 224
           G      +   +++ LR L          +V  NQ+  ++    +    P+   GGN + 
Sbjct: 235 GRGELSARQNHLARFLRMLLRLADEFGVAVVITNQVVAQVDGASMFAADPKKPVGGNIMA 294

Query: 225 FYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
             S+ RL +R      R+  I D   +  ++    +  + +  
Sbjct: 295 HASTTRLYLRKGRGETRICKIYDSPCLPESEAMFAINADGIGD 337


>gi|548664|sp|P36601|RAD51_SCHPO RecName: Full=DNA repair protein rhp51; AltName: Full=RAD51 homolog
 gi|297522|emb|CAA80399.1| Rec A-like Protein [Schizosaccharomyces pombe]
 gi|395378|emb|CAA80879.1| Rad51-like protein [Schizosaccharomyces pombe]
          Length = 365

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 91/243 (37%), Gaps = 30/243 (12%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  L  GG   G I E++G   +GK+ +        Q         G C +
Sbjct: 123 TITTGSKQLDTLL-QGGVETGSITELFGEFRTGKSQICHTLAVTCQLPIDMGGGEGKCLY 181

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDM---LVRSGAVDII 149
           +D E     +    +           L N+  ++    +  LE+      ++      ++
Sbjct: 182 IDTEGTFRPVRLLAVADRYGLNGEEVLDNVAYARAYNADHQLELLQQAANMMSESRFSLL 241

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           V+DS  AL  R +  G    S   M    +++ +R L          +V  NQ+  ++  
Sbjct: 242 VVDSCTALY-RTDFSGRGELSARQMH---LARFMRTLQRLADEFGIAVVITNQVVAQVDG 297

Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
                 P+   GGN L   S+ RL +R      R+  I D   +  ++    +  + +  
Sbjct: 298 ISFNPDPKKPIGGNILAHSSTTRLSLRKGRGEQRICKIYDSPCLPESEAIFAINSDGVGD 357

Query: 262 PFK 264
           P +
Sbjct: 358 PKE 360


>gi|327272568|ref|XP_003221056.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog [Anolis
           carolinensis]
          Length = 341

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 54/241 (22%), Positives = 89/241 (36%), Gaps = 32/241 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-----KTGGTCAFVD 102
           +S+GS   D  LG GG     I E +G   +GKT L+      +Q      TGG   F+D
Sbjct: 103 ISTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTICVTAQLPGADYTGGKIIFID 161

Query: 103 AEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-----VDII 149
            E+       R +           L N+L ++  T E  +E+ D +            ++
Sbjct: 162 TENTFRPDRLRDIADRFNADHDAVLDNVLYARAYTSEHQMELLDFVAAKFHEEPGIFKLL 221

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           +IDS+ AL          G      + + ++Q L +L          +   NQM    G 
Sbjct: 222 IIDSIMALFR----VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGA 277

Query: 210 MFG---SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMA 260
                  P+   GG+ L   S+ R+ +R      R+  I D   +  N+    +    + 
Sbjct: 278 TMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIG 337

Query: 261 S 261
            
Sbjct: 338 D 338


>gi|85116816|ref|XP_965126.1| DNA repair protein RAD51 [Neurospora crassa OR74A]
 gi|2182133|dbj|BAA20366.1| MEI3 [Neurospora crassa]
 gi|28926929|gb|EAA35890.1| DNA repair protein RAD51 [Neurospora crassa OR74A]
          Length = 353

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 89/244 (36%), Gaps = 33/244 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  L  GG   G + EI+G   +GK+ +        Q         G C +
Sbjct: 105 SITTGSKNLDTLLA-GGIETGSVTEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLY 163

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     +    +           L N+  ++    +  L++      ++      ++
Sbjct: 164 IDTEGTFRPVRLLAVANRYGLSGEEVLDNVAYARAYNSDHQLQLLNQAAAMMCETRFSLL 223

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DS  +L         +G      +   +++ +R L          +V  NQ+  ++  
Sbjct: 224 IVDSATSLYR----TDFLGRGELSSRQTHLAKFMRTLQRLADEFGIAVVITNQVVAQVDG 279

Query: 209 ----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               +    P+   GGN +   S+ R+ ++      R+  I D   +  +     + ++ 
Sbjct: 280 GPSAMFNPDPKKPIGGNIIAHASTTRISLKKGRGETRIAKIYDSPCLPESDCLFAINEDG 339

Query: 259 MASP 262
           +  P
Sbjct: 340 IGDP 343


>gi|295669710|ref|XP_002795403.1| DNA repair protein RAD51 [Paracoccidioides brasiliensis Pb01]
 gi|226285337|gb|EEH40903.1| DNA repair protein RAD51 [Paracoccidioides brasiliensis Pb01]
          Length = 348

 Score = 88.7 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 91/249 (36%), Gaps = 33/249 (13%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              +  +++GS  LD  L  GG   G I EI+G   +GK+ +        Q         
Sbjct: 97  RTDLICITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGE 155

Query: 96  GTCAFVDAEHALDS--------IYARKLGVDLKNLLISQPDTGEQALEI---TDMLVRSG 144
           G C F+D E              Y       L N+  ++    +  L++      ++   
Sbjct: 156 GKCLFIDTEGTFRPTRLLSVAQRYGLAGEEVLDNIAYARAYNSDHQLQLLNQASQMMCET 215

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  AL  R +  G    S   +    +++ +R L          +V  NQ+ 
Sbjct: 216 RFSLLIVDSATALY-RTDFSGRGELSNRQIH---LAKFMRALRRLADEFGIAVVITNQVV 271

Query: 205 MKIG-----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVK 253
            ++      +    P+   GGN +   S+ RL ++      R+  I D   +  +     
Sbjct: 272 AQVDGGPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRICKIYDSPCLPESDCLFA 331

Query: 254 VVKNKMASP 262
           + ++ +  P
Sbjct: 332 IGEDGIGDP 340


>gi|225682824|gb|EEH21108.1| DNA repair protein RAD51 [Paracoccidioides brasiliensis Pb03]
 gi|226290270|gb|EEH45754.1| DNA repair protein RAD51 [Paracoccidioides brasiliensis Pb18]
          Length = 348

 Score = 88.7 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 92/249 (36%), Gaps = 33/249 (13%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              +  +++GS  LD  L  GG   G I EI+G   +GK+ +        Q         
Sbjct: 97  RTDLICITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGE 155

Query: 96  GTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSG 144
           G C ++D E     I    +           L N+  ++    +  L++      ++   
Sbjct: 156 GKCLYIDTEGTFRPIRLLSVAQRYGLVGEEVLDNIAYARAYNSDHQLQLLNQASQMMCET 215

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  AL  R +  G    S   +    +++ +R L          +V  NQ+ 
Sbjct: 216 RFSLLIVDSATALY-RTDFSGRGELSNRQIH---LAKFMRALRRLADEFGIAVVITNQVV 271

Query: 205 MKIG-----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVK 253
            ++      +    P+   GGN +   S+ RL ++      R+  I D   +  +     
Sbjct: 272 AQVDGGPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRICKIYDSPCLPESDCLFA 331

Query: 254 VVKNKMASP 262
           + ++ +  P
Sbjct: 332 IGEDGIGDP 340


>gi|322495734|emb|CBZ31040.1| RAD51/dmc1 protein [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 358

 Score = 88.7 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 60/275 (21%), Positives = 100/275 (36%), Gaps = 35/275 (12%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K +EAA    +  +  G+     S       I  +S+GS  LD  LG GG     I E 
Sbjct: 90  DKIIEAARRVGEVGFITGS-----SCLQQRSTILRISTGSTALDQLLGGGGIESRSITEA 144

Query: 73  YGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYA----RKLGVD---- 118
           +G   +GKT +        Q         G   +VD E             + G+D    
Sbjct: 145 FGEFRTGKTQIGHTLCVTCQLPLEMGGGNGKAVYVDTEGTFRPERIRPIAERFGMDSNSV 204

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVD---IIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           L N+L+++  T E    +  M+    A D   ++V+DS+ AL          G      +
Sbjct: 205 LDNILVARAYTHEHQAHLLSMVAAKMAEDQFSLLVVDSITALFR----VDFSGRGELAER 260

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKI---GVMFGSPETTTGGNALKFYSSVRLD 232
            + +++ L +L          +   NQ+        +    P+   GG+ L   S+ RL 
Sbjct: 261 QQKLAKMLSQLIKIAEEFNIAVYITNQVVSDPGGASMFVADPKKPVGGHILAHASTTRLS 320

Query: 233 IR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
           +R      RV  I D  S+   +    + +  +  
Sbjct: 321 LRKGRGDQRVCKIFDSPSLPELECVYSISEQGIID 355


>gi|125772735|ref|XP_001357643.1| GA20711 [Drosophila pseudoobscura pseudoobscura]
 gi|195159258|ref|XP_002020499.1| GL13479 [Drosophila persimilis]
 gi|54637375|gb|EAL26777.1| GA20711 [Drosophila pseudoobscura pseudoobscura]
 gi|194117268|gb|EDW39311.1| GL13479 [Drosophila persimilis]
 gi|225581186|gb|ACN94754.1| GA20711 [Drosophila miranda]
          Length = 335

 Score = 88.7 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 92/262 (35%), Gaps = 35/262 (13%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----- 94
            +   + ++++GS  LD  LG GG   G I EI+G    GKT +        Q       
Sbjct: 87  QMRADVVMLTTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQICHTLAVTCQLPISQKG 145

Query: 95  -GGTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQA---LEITDMLVR 142
             G C ++D E    +     +           L N+  ++    +Q    L++   ++ 
Sbjct: 146 GEGKCLYIDTESTFRTERLSAIAQRFKLNESEVLDNVSCARAYNSDQQTKLLQMAAGMLF 205

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                 +++DSV AL         +G      +   +   +R+L          +V  NQ
Sbjct: 206 ETRYAAVIVDSVMALYR----SDYIGRGELAARQNHLGLCMRQLQRLADEFGVAVVITNQ 261

Query: 203 MRMKIG----VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           +  ++     +     +   GG+ L   S+ RL +R+           G     K+  + 
Sbjct: 262 VTAQLDGGGGMFVADAKKPVGGHILAHASTTRLYLRKGK---------GETRICKIYDSP 312

Query: 259 MASPFKQVEFDIMYGEGISFFG 280
                + +   +  G G +  G
Sbjct: 313 CLPESEAMFAILPDGIGDAKEG 334


>gi|326476592|gb|EGE00602.1| meiotic recombination protein dmc1 [Trichophyton tonsurans CBS
           112818]
          Length = 337

 Score = 88.7 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 57/259 (22%), Positives = 96/259 (37%), Gaps = 35/259 (13%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG Q    + +  +S+GS   D  LG GGF    I E+YG    GKT L+      +Q
Sbjct: 86  MELGHQ---RKRVVKISTGSKQFDTILG-GGFQSMSISEVYGEFRCGKTQLSHTMSVIAQ 141

Query: 93  ------KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITD 138
                    G  A++D E         ++           L+N+  ++    E  LE+ +
Sbjct: 142 LPKDLGGAEGKAAYIDTEGTFRPERIAQIAERFGIDPDSALENISYARALNSEHQLELLN 201

Query: 139 ---MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
                  SG   +++IDS+     R +  G         + + ++Q L KL         
Sbjct: 202 TLAKEFASGEYRLLIIDSIMNCF-RVDYCGRGE---LADRQQKLNQFLMKLAHMAEEFNV 257

Query: 196 ILVFINQMRMKIGVM----FGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
            ++  NQ++   G              GG+ L   S+ R+ +R      RV  I+D    
Sbjct: 258 CVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTRVLLRKGRGDERVAKIQDSPDC 317

Query: 246 TGNQTRVKVVKNKMASPFK 264
              +    +    +  P K
Sbjct: 318 PEREATYVITNGGINDPEK 336


>gi|154314604|ref|XP_001556626.1| hypothetical protein BC1G_04011 [Botryotinia fuckeliana B05.10]
 gi|150848633|gb|EDN23826.1| hypothetical protein BC1G_04011 [Botryotinia fuckeliana B05.10]
          Length = 349

 Score = 88.7 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 91/244 (37%), Gaps = 33/244 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  L  GG   G + EI+G   +GK+ +        Q         G C +
Sbjct: 103 SITTGSKQLDTLLA-GGVETGSVTEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLY 161

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     +    +           L N+  ++    +  L++      ++      ++
Sbjct: 162 IDTEGTFRPVRLLAVANRYGLSGEEVLDNVAYARAYNSDHQLQLLNQAAQMMCETRFSLL 221

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DS  AL  R +  G    S   M    +++ +R L          +V  NQ+  ++  
Sbjct: 222 IVDSATALY-RTDFTGRGELSSRQMH---LAKFMRMLQRLADEFGIAVVITNQVVAQVDG 277

Query: 209 ----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               +    P+   GGN +   S+ RL ++      R+  I D   +  +     + ++ 
Sbjct: 278 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRICKIYDSPCLPESDCLFAINEDG 337

Query: 259 MASP 262
           +  P
Sbjct: 338 IGDP 341


>gi|154345283|ref|XP_001568583.1| RAD51/dmc1 protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134065920|emb|CAM43702.1| RAD51/dmc1 protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 359

 Score = 88.7 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 59/275 (21%), Positives = 98/275 (35%), Gaps = 35/275 (12%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K +EAA       +  G+I            I  +S+GS  LD  LG GG     I E 
Sbjct: 91  DKIIEAARRVSDVGFITGSIYL-----QQRSTILRISTGSTALDQLLGGGGIESRSITEA 145

Query: 73  YGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKL--------GVD 118
           +G   +GKT +       SQ         G   +VD E        R +           
Sbjct: 146 FGEFRTGKTQIGHTLCVTSQLPLEMGGGNGKVVYVDTEGTFRPERIRPIAERFGLDPNSV 205

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVD---IIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           L N+L+++  T E    +  M+    A D   ++V+DS+ AL          G      +
Sbjct: 206 LDNILVARAYTHEHQAHLLSMVAAKMAEDQFSLLVVDSITALFR----VDFSGRGELAER 261

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKI---GVMFGSPETTTGGNALKFYSSVRLD 232
            + +++ L +L          +   NQ+        +    P+   GG+ +   S+ RL 
Sbjct: 262 QQKLAKMLSQLMKIAEEFNVAVYITNQVVSDPGGASMFVADPKKPVGGHIIAHASTTRLS 321

Query: 233 IR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
           +R      RV  I D  S+   +    + +  +  
Sbjct: 322 LRKGRGDQRVCKIFDSPSLPELECVYSISEQGITD 356


>gi|157829762|pdb|1AA3|A Chain A, C-Terminal Domain Of The E. Coli Reca, Nmr, Minimized
           Average Structure
          Length = 63

 Score = 88.7 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 48/58 (82%)

Query: 276 ISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           I+F+GEL+DLGVK  +++K+GAW+S+KG+++GQG+ N+  +L++N E A+ IE  +R+
Sbjct: 1   INFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRE 58


>gi|302698277|ref|XP_003038817.1| RecA family ATPase [Schizophyllum commune H4-8]
 gi|300112514|gb|EFJ03915.1| RecA family ATPase [Schizophyllum commune H4-8]
          Length = 348

 Score = 88.7 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 59/282 (20%), Positives = 104/282 (36%), Gaps = 38/282 (13%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K M+     K  EAA   +   +  G            + +  +S+GS  +D  LG GG 
Sbjct: 73  KGMSEAKVEKIKEAAHKILGSSFATG-----VEIQDKRKRVNTISTGSKAVDGILG-GGI 126

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKL--- 115
               I E+YG   +GKT LA      +Q         G  A++D E        + +   
Sbjct: 127 MSQSISEVYGEFRTGKTQLAHTMSVVAQLPPDLGGASGKVAYIDTEGTFRPDRIKSIAER 186

Query: 116 -----GVDLKNLLISQPDTGEQALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEGD 166
                 + L+N+L ++    E  +E+ +      A D    ++++DS+ AL         
Sbjct: 187 FGVDGSMALENILYARAFNSEHQMELINECSSRFAEDKDFRLLIVDSIMALFR----VDY 242

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS----PETTTGGNA 222
            G      + + ++Q L KLT         ++  NQ++   G              GG+ 
Sbjct: 243 SGRGELSERQQKLAQMLSKLTKLSEEYNIAILLTNQVQSDPGATMTFVAGGALKPIGGHI 302

Query: 223 LKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
           L   S+ R+ +R      RV  + D      ++   K+ +  
Sbjct: 303 LSHASATRMFLRKGRAEERVAKLVDSPDRPESEASYKLDEGG 344


>gi|242064614|ref|XP_002453596.1| hypothetical protein SORBIDRAFT_04g008730 [Sorghum bicolor]
 gi|241933427|gb|EES06572.1| hypothetical protein SORBIDRAFT_04g008730 [Sorghum bicolor]
          Length = 344

 Score = 88.7 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 59/272 (21%), Positives = 102/272 (37%), Gaps = 35/272 (12%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K  EAA   + + +  G  + L  +      +  +++GS  LD  LG GG     I E 
Sbjct: 78  DKICEAAEKLLNQGFMTGTDLLLKRKS-----VVRITTGSQALDELLG-GGIETLCITEA 131

Query: 73  YGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYA----RKLGVD---- 118
           +G   SGKT LA      +Q         G  A++D E             + G+D    
Sbjct: 132 FGEFRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAV 191

Query: 119 LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           L N++ ++  T E    +       +      ++++DSV AL          G      +
Sbjct: 192 LDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAER 247

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDI 233
            + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +
Sbjct: 248 QQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLML 307

Query: 234 R------RVGSIKDKDSITGNQTRVKVVKNKM 259
           R      RV  I D  ++   +   +V    +
Sbjct: 308 RKGKGEQRVCKIFDAPNLPEGEHVFQVTSGGI 339


>gi|14279922|gb|AAK58805.1| RecA [Bacteroides fragilis]
          Length = 101

 Score = 88.7 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 70/101 (69%), Positives = 85/101 (84%)

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           DAEHA D  YA KLGVD+ NL ISQPD GEQALEI + L+RS A+DIIV+DSVAALTP+A
Sbjct: 1   DAEHAFDRFYAAKLGVDVDNLFISQPDNGEQALEIAEQLIRSSAIDIIVVDSVAALTPKA 60

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           EIEGDMG++  G+QARLMSQA RKLTS++S+++   +FINQ
Sbjct: 61  EIEGDMGDNKVGLQARLMSQAFRKLTSAVSKTRTTCIFINQ 101


>gi|224095169|ref|XP_002195715.1| PREDICTED: DMC1 dosage suppressor of mck1 homolog, meiosis-specific
           homologous recombination (yeast) [Taeniopygia guttata]
          Length = 342

 Score = 88.7 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 89/242 (36%), Gaps = 33/242 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           VS+GS   D  LG GG     I E +G   +GKT L+      +Q       TGG   F+
Sbjct: 103 VSTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGPNGYTGGKIIFI 161

Query: 102 DAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-----VDI 148
           D E+       R +           L N+L ++  T E  +E+ D +            +
Sbjct: 162 DTENTFRPDRLRDIADRFNVDHEAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKL 221

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           ++IDS+ AL          G      + + ++Q L +L          +   NQM    G
Sbjct: 222 LIIDSIMALFR----VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPG 277

Query: 209 VMFG---SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
                   P+   GG+ L   S+ R+ +R      R+  I D   +  N+    +    +
Sbjct: 278 ATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGI 337

Query: 260 AS 261
             
Sbjct: 338 GD 339


>gi|171680227|ref|XP_001905059.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939740|emb|CAP64966.1| unnamed protein product [Podospora anserina S mat+]
          Length = 348

 Score = 88.7 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 89/244 (36%), Gaps = 33/244 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  L  GG   G + EI+G   +GK+ +        Q         G C +
Sbjct: 102 SITTGSKNLDTLLA-GGIETGSVTEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCMY 160

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     +    +           L N+  ++    +  L++      ++      ++
Sbjct: 161 IDTEGTFRPVRLLAVANRYGLSGEEVLDNVAYARAYNSDHQLQLLNQAAAMMCETRFSLL 220

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DS  +L         +G      +   +++ +R L          +V  NQ+  ++  
Sbjct: 221 IVDSATSLYR----TDFLGRGELSSRQTHLAKFMRTLQRLADEFGIAVVITNQVVAQVDG 276

Query: 209 ----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               +    P+   GGN +   S+ R+ ++      R+  I D   +  +     + ++ 
Sbjct: 277 GPSAMFNPDPKKPIGGNIIAHASTTRISLKKGRAETRIAKIYDSPCLPESDCLFAIGEDG 336

Query: 259 MASP 262
           +  P
Sbjct: 337 IGDP 340


>gi|19114794|ref|NP_593882.1| recombinase Rhp51 [Schizosaccharomyces pombe 972h-]
 gi|397843|dbj|BAA02963.1| SpRad51 [Schizosaccharomyces pombe]
 gi|7708593|emb|CAB90141.1| recombinase Rhp51 [Schizosaccharomyces pombe]
          Length = 365

 Score = 88.7 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 91/243 (37%), Gaps = 30/243 (12%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  L  GG   G I E++G   +GK+ +        Q         G C +
Sbjct: 123 TITTGSKQLDTLL-QGGVETGSITELFGEFRTGKSQICHTLAVTCQLPIDMGGGEGKCLY 181

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDM---LVRSGAVDII 149
           +D E     +    +           L N+  ++    +  LE+      ++      ++
Sbjct: 182 IDTEGTFRPVRLLAVADRYGLNGEEVLDNVAYARAYNADHQLELLQQAANMMSESRFSLL 241

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           V+DS  AL  R +  G    S   M    +++ +R L          +V  NQ+  ++  
Sbjct: 242 VVDSCTALY-RTDFSGRGELSARQMH---LARFMRTLQRLADEFGIAVVITNQVVAQVDG 297

Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
                 P+   GGN L   S+ RL +R      R+  I D   +  ++    +  + +  
Sbjct: 298 ISFNPDPKKPIGGNILAHSSTTRLSLRKGRGEQRICKIYDSPCLPESEAIFAINSDGVGD 357

Query: 262 PFK 264
           P +
Sbjct: 358 PKE 360


>gi|323424254|emb|CBZ39274.1| recombinase A [Thiorhodococcus bheemlicus]
          Length = 119

 Score = 88.7 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 81/105 (77%), Positives = 97/105 (92%)

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAALTP+AEIEG+MG+S  
Sbjct: 15  EKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAALTPKAEIEGEMGDSHV 74

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
           G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMFGSPE T
Sbjct: 75  GLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSPEAT 119


>gi|112984536|ref|NP_001037484.1| Rad51 homolog [Bombyx mori]
 gi|2058709|gb|AAB53330.1| Rad51 homolog [Bombyx mori]
          Length = 338

 Score = 88.7 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 83/244 (34%), Gaps = 31/244 (12%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            I  +++GS  LD  LG GG   G I EI+G   +GKT L        Q         G 
Sbjct: 97  EIIQLTTGSKELDRLLG-GGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIEQSGGEGK 155

Query: 98  CAFVDAEHALDSI--------YARKLGVDLKNLLISQPDTGEQA---LEITDMLVRSGAV 146
           C ++D E              Y  +    L N+  ++    +     L     ++     
Sbjct: 156 CMYIDTEGTFRPERLLAVAQRYGMEGAAVLDNVAYARAYNTDHQTQLLVQACAMMAESRY 215

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            +I++DS  AL          G      +   + + +R L          ++  NQ+  +
Sbjct: 216 SLIIVDSATALYR----TDYSGRGELNSRQLHLGRFMRMLLRLADEFGVAVIITNQVVAQ 271

Query: 207 IGVMFGSP---ETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKN 257
           +  +       +   GG+ +   S+ RL +R      RV  I D   +   +    +   
Sbjct: 272 VDSVGVFNADTKKPIGGHIIAHASTTRLYLRKGRGDNRVCKIYDSPCLPETEAMFAISAE 331

Query: 258 KMAS 261
            +  
Sbjct: 332 GITD 335


>gi|327296680|ref|XP_003233034.1| meiotic recombination protein dmc1 [Trichophyton rubrum CBS 118892]
 gi|326464340|gb|EGD89793.1| meiotic recombination protein dmc1 [Trichophyton rubrum CBS 118892]
          Length = 337

 Score = 88.7 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 57/259 (22%), Positives = 96/259 (37%), Gaps = 35/259 (13%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG Q    + +  +S+GS   D  LG GGF    I E+YG    GKT L+      +Q
Sbjct: 86  MELGHQ---RKRVVKISTGSKQFDTILG-GGFQSMSISEVYGEFRCGKTQLSHTMSVIAQ 141

Query: 93  ------KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITD 138
                    G  A++D E         ++           L+N+  ++    E  LE+ +
Sbjct: 142 LPKDMGGAEGKAAYIDTEGTFRPERIAQIAERFGVDPDSALENISYARALNSEHQLELLN 201

Query: 139 ---MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
                  SG   +++IDS+     R +  G         + + ++Q L KL         
Sbjct: 202 TLAKEFASGEYRLLIIDSIMNCF-RVDYCGRGE---LADRQQKLNQFLMKLAHMAEEFNV 257

Query: 196 ILVFINQMRMKIGVM----FGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
            ++  NQ++   G              GG+ L   S+ R+ +R      RV  I+D    
Sbjct: 258 CVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTRVLLRKGRGDERVAKIQDSPDC 317

Query: 246 TGNQTRVKVVKNKMASPFK 264
              +    +    +  P K
Sbjct: 318 PEREATYVITNGGINDPEK 336


>gi|241007827|ref|XP_002405184.1| DNA repair protein RAD51/RHP55, putative [Ixodes scapularis]
 gi|215491711|gb|EEC01352.1| DNA repair protein RAD51/RHP55, putative [Ixodes scapularis]
          Length = 352

 Score = 88.7 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 88/246 (35%), Gaps = 31/246 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              I  +++GS  LD  LG GG   G I E++G   +GKT L        Q         
Sbjct: 109 RSDIVQITTGSTELDKLLG-GGIETGSITEVFGEFRTGKTQLCHMMAVTCQLPIEHSGGE 167

Query: 96  GTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSG 144
           G C ++D E                      L N+  ++    +   ++      ++   
Sbjct: 168 GKCLYIDTEGTFRPERLLAAAEKYGLSGPDVLDNVAYARAYNSDHQTQLLIQASAMMAET 227

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++V+DS  AL  R +  G    S   M    +++ LR L          ++  NQ+ 
Sbjct: 228 RYALLVVDSAMALY-RTDYSGRGELSARQMH---LARFLRMLLRLADEFGVAVLITNQVV 283

Query: 205 MKIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
            ++    +    P+   GGN +   S+ RL +R      R+  I D   +   +    + 
Sbjct: 284 AQVDGASMFAADPKKPIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIT 343

Query: 256 KNKMAS 261
              +A 
Sbjct: 344 PQGIAD 349


>gi|226501424|ref|NP_001141379.1| hypothetical protein LOC100273470 [Zea mays]
 gi|194698360|gb|ACF83264.1| unknown [Zea mays]
 gi|194704244|gb|ACF86206.1| unknown [Zea mays]
 gi|195626386|gb|ACG35023.1| meiotic recombination protein DMC1 [Zea mays]
          Length = 344

 Score = 88.7 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 59/272 (21%), Positives = 102/272 (37%), Gaps = 35/272 (12%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K  EAA   + + +  G  + L  +      +  +++GS  LD  LG GG     I E 
Sbjct: 78  DKICEAAEKLLNQGFMTGNDLLLKRKS-----VVRITTGSQALDELLG-GGIETLCITEA 131

Query: 73  YGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYA----RKLGVD---- 118
           +G   SGKT LA      +Q         G  A++D E             + G+D    
Sbjct: 132 FGEFRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAV 191

Query: 119 LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           L N++ ++  T E    +       +      ++++DSV AL          G      +
Sbjct: 192 LDNIIYARAYTYEHQYNLLLGLAAKMAEEPFKLLIVDSVIALFR----VDFSGRGELAER 247

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDI 233
            + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +
Sbjct: 248 QQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLML 307

Query: 234 R------RVGSIKDKDSITGNQTRVKVVKNKM 259
           R      RV  I D  ++   +   +V    +
Sbjct: 308 RKGKGEQRVCKIFDAPNLPEGEAVFQVTSGGI 339


>gi|7229683|gb|AAF42940.1|AF234170_1 DMC1 protein [Hordeum vulgare]
 gi|326513156|dbj|BAK06818.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 344

 Score = 88.7 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 58/274 (21%), Positives = 102/274 (37%), Gaps = 35/274 (12%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K  EAA   + + +  G+           + +  +++GS  LD  LG GG     I E 
Sbjct: 78  DKICEAAEKLLSQGFMTGS-----DLLIKRKSVVRITTGSQALDELLG-GGIETLCITEA 131

Query: 73  YGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYA----RKLGVD---- 118
           +G   SGKT LA      +Q         G  A++D E             + G+D    
Sbjct: 132 FGEFRSGKTQLAHTLCVSTQLPLHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAV 191

Query: 119 LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           L N++ ++  T E    +       +      ++++DSV AL          G      +
Sbjct: 192 LDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAER 247

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDI 233
            + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +
Sbjct: 248 QQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLML 307

Query: 234 R------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
           R      RV  I D  ++   +   ++    +A 
Sbjct: 308 RKGKGEQRVCKIFDAPNLPEGEAVFQITTGGLAD 341


>gi|552010|gb|AAA26962.1| sequence derived from a PCR product [Streptococcus pyogenes]
          Length = 102

 Score = 88.7 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 65/102 (63%), Positives = 86/102 (84%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F+DAEHALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL P
Sbjct: 1   FIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           RAEI+GD+G+S  G+QAR+MSQA+RKL++SI+++K I +FIN
Sbjct: 61  RAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFIN 102


>gi|50309711|ref|XP_454867.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644002|emb|CAG99954.1| KLLA0E20241p [Kluyveromyces lactis]
          Length = 369

 Score = 88.7 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 96/258 (37%), Gaps = 34/258 (13%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              +  +++GS  LD  LG GG   G I E++G   +GK+ L        Q         
Sbjct: 123 RNEMICLTTGSKNLDTLLG-GGIETGSITELFGEFRTGKSQLCHTLAVTCQIPLDMGGGE 181

Query: 96  GTCAFVDAEHALDSIY----ARKLGVDLK----NLLISQPDTGEQALEI---TDMLVRSG 144
           G C ++D E     I     A++ G+D      N+  ++    +  L++      ++   
Sbjct: 182 GKCLYIDTEGTFRPIRLVSIAQRFGLDPDDALNNVAYARAYNADHQLKLLDAAAQMMSES 241

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              +I++DS+ AL  R +  G    S   M    +++ +R L     +     V  NQ+ 
Sbjct: 242 RFSLIIVDSIMALY-RTDFSGRGELSARQMH---LAKFMRSLQRLADQFGVAAVVTNQVV 297

Query: 205 MKIGVMFG---SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
            ++         P+   GGN +   S+ RL  ++           G Q   KVV +    
Sbjct: 298 AQVDGGMMFNPDPKKPIGGNIMAHSSTTRLGFKKGK---------GPQRYCKVVDSPCLP 348

Query: 262 PFKQVEFDIMYGEGISFF 279
             + V      G G    
Sbjct: 349 EAECVFAIYEDGIGDPRE 366


>gi|312090474|ref|XP_003146628.1| rad51 [Loa loa]
 gi|307758208|gb|EFO17442.1| rad51 [Loa loa]
          Length = 360

 Score = 88.7 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 90/245 (36%), Gaps = 32/245 (13%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTG 95
              I  +++GS  LD  LG GG   G I EI+G   +GK+ L        Q         
Sbjct: 116 RSEIIQIATGSRELDRLLG-GGVETGSITEIFGEFRTGKSQLCHTLAVMCQLPVDMGGAE 174

Query: 96  GTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEIT---DMLVRSG 144
           G C ++D E          +           L N++ ++    +  +++      ++   
Sbjct: 175 GKCLWIDTEGTFRPERLLAIAERHKLSSQDVLDNVVYARCHNTDHQMQLLIQGSAMMAES 234

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++V+DS  AL          G      +  ++++ LR L          +V  NQ+ 
Sbjct: 235 RYALLVVDSATALFR----TDYSGRGELASRQTMLAKYLRMLLKLSDEFGVAVVITNQVV 290

Query: 205 MKIG----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKV 254
            ++     +  G  +   GGN +   S+ RL +R      R+  I D   +  ++    +
Sbjct: 291 SQVDGGCGMFQGETKKPIGGNIMAHASTTRLYLRKGRGITRICKIYDSPCLPESEAVFAI 350

Query: 255 VKNKM 259
             + +
Sbjct: 351 TTHGI 355


>gi|91080339|ref|XP_974640.1| PREDICTED: similar to RAD51 homolog protein [Tribolium castaneum]
 gi|270006418|gb|EFA02866.1| spindle A-like protein [Tribolium castaneum]
          Length = 338

 Score = 88.7 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 91/244 (37%), Gaps = 31/244 (12%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            I  +++GS  LD  LG GG   G I EI+G   +GKT +        Q         G 
Sbjct: 97  NIIQLTTGSKELDKLLG-GGIETGSITEIFGEFRTGKTQICHTLAVTCQLALESGGGEGK 155

Query: 98  CAFVDAEHALDSIY----ARKLGVD----LKNLLISQPDTGEQALEI---TDMLVRSGAV 146
           C ++D E           A +  +D    L N++ ++    +   E+      ++     
Sbjct: 156 CLYIDTEGTFRPERLLPVAERYNMDGQQVLDNVVFARAFNTDHQTELLVHAAAMMMESRY 215

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++++DS  +L          G      +   +++ LR L          +V  NQ+  +
Sbjct: 216 CLLIVDSATSLYR----TDYSGRGELSARQNHLARFLRMLLRLADEFGVAVVLTNQVVAQ 271

Query: 207 IG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKN 257
           +    +    P+   GGN +   S+ RL +R      RV  I D   +  ++    +  +
Sbjct: 272 VDGAAMFNADPKKPIGGNIMAHSSTTRLSLRKGRGEARVCKIYDSPCLPESEAIFAIRPD 331

Query: 258 KMAS 261
            +  
Sbjct: 332 GIGD 335


>gi|288559373|ref|YP_003422859.1| DNA repair and recombination protein RadA [Methanobrevibacter
           ruminantium M1]
 gi|288542083|gb|ADC45967.1| DNA repair and recombination protein RadA [Methanobrevibacter
           ruminantium M1]
          Length = 311

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 92/245 (37%), Gaps = 27/245 (11%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
                +  +++GS  +D  +G GG     I E++G   SGK+ ++       Q       
Sbjct: 71  ERRRDVGRITTGSKNVDELIG-GGIETQSITEVFGEFGSGKSQISHELAVTVQLPKERGG 129

Query: 94  TGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDML---VR 142
             G C F+D E+        ++           L+ + I++       + + + +   ++
Sbjct: 130 LEGECVFIDTENTFRPERIEQIADACGIDREEALQRIHIARAFNSSHQILMAEKINELIQ 189

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG    +VI        RAE  G         + + ++Q L  L    +     +   NQ
Sbjct: 190 SGVNVRLVIVDSLMAHFRAEYVGR---ESLATRQQKLNQHLHALQQIANTYNVAVFLTNQ 246

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDI------RRVGSIKDKDSITGNQTRVKVVK 256
           ++ +    FGSP    GG+ L   S+ R+ +      +R+  + D   +   +   KV  
Sbjct: 247 VQARPDAFFGSPTKAIGGHVLGHASTYRIWLKKGLAGKRIARLVDSPHLPEGEAVFKVTT 306

Query: 257 NKMAS 261
           + +  
Sbjct: 307 DGIVD 311


>gi|157965115|gb|ABW06618.1| DNA repair protein RAD51 [Buddenbrockia plumatellae]
          Length = 254

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 85/237 (35%), Gaps = 31/237 (13%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTG 95
              I  +S+GS  LD  L  GG   G I E++G   +GK+ L        Q         
Sbjct: 22  RSEIIQISTGSKELDKLL-QGGIETGSITELFGEFRTGKSQLCHQLCITCQLPVDCGGAE 80

Query: 96  GTCAFVDAEHALDSIY----ARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSG 144
           G   ++D E           A++ G++    L N+  ++    +   ++      ++   
Sbjct: 81  GKALYIDTEGTFRPERLLAAAQRYGLNGQQALDNVACARAYNTDHQTQLLCQAAAMMAES 140

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++V+DS  AL          G S    +   +++ LR L          +V  NQ+ 
Sbjct: 141 RYALLVVDSATALYR----TDYGGRSELAPRQMHLAKFLRLLLRIADEFGVAVVITNQVV 196

Query: 205 MKIGV---MFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRV 252
            ++          +   GG+ +   S+ RL  +      R+  I D   +  ++   
Sbjct: 197 AQVDNASLFQADSKKPVGGHIIAHASTTRLYFKKGKGENRICKIYDSPXLPESEALF 253


>gi|115660762|ref|XP_791280.2| PREDICTED: similar to RecA homolog Dmc1 [Strongylocentrotus
           purpuratus]
 gi|115971205|ref|XP_001184156.1| PREDICTED: similar to RecA homolog Dmc1 [Strongylocentrotus
           purpuratus]
          Length = 324

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 89/248 (35%), Gaps = 33/248 (13%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTG 95
              +  +++GS  LD  LG GG     I E +G   +GKT L+      +Q        G
Sbjct: 79  RRNVFRITTGSTELDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVCTQLPGSNGYPG 137

Query: 96  GTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQALEITDMLVRSGA-- 145
           G   F+D E+       R +        G  L N+L ++  T E   E+ D         
Sbjct: 138 GKVIFIDTENTFRPDRLRDIADRFNLDHGAMLDNVLYARAYTSEHQFELLDYAAGKFHEE 197

Query: 146 ---VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                +++IDS+ AL          G      + + ++Q L KL          +   NQ
Sbjct: 198 PGVFKLLIIDSIMALFR----VDFTGRGELADRQQKLAQMLSKLQKISEEYNVAVFVTNQ 253

Query: 203 MRMKIGVMFG---SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVK 253
           M    G        P+   GG+ L   S+ R+ +R      R+  I D   +  ++    
Sbjct: 254 MTSDPGATMSFVADPKKPIGGHILAHASTTRISLRKGRGETRIAKIYDSPDMPESEATFA 313

Query: 254 VVKNKMAS 261
           +    +  
Sbjct: 314 ISTGGIID 321


>gi|166714597|gb|ABY88030.1| RecA [Stenotrophomonas sp. LMG 10887]
          Length = 75

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/75 (69%), Positives = 64/75 (85%)

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           KFY+SVRLDIRR+G+IK  D I GNQT++KVVKNK+A PFKQV  +I+YGEGIS  GELI
Sbjct: 1   KFYASVRLDIRRIGAIKKGDEIIGNQTKIKVVKNKLAPPFKQVITEILYGEGISREGELI 60

Query: 284 DLGVKASIVDKSGAW 298
           D+GV A +V+K+GAW
Sbjct: 61  DMGVDAKLVEKAGAW 75


>gi|330040667|ref|XP_003239988.1| DNA repair protein Rad51 [Cryptomonas paramecium]
 gi|327206914|gb|AEA39090.1| DNA repair protein Rad51 [Cryptomonas paramecium]
          Length = 331

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 88/249 (35%), Gaps = 31/249 (12%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----- 94
            + + +  +++GS  +D  L  GG   G I E++G   +GKT +        Q +     
Sbjct: 86  QMRQDLIHLTTGSREIDRIL-KGGIETGSITELFGEFRTGKTQICHTLCVTCQLSIDQGG 144

Query: 95  -GGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVR 142
             G   ++D E          +           L N+  ++    +   E+      ++ 
Sbjct: 145 GEGRVLYIDTEGTFRPERIVAIANRFNLNQQDVLDNIAFARAYNTDHQTELLNQACGMMA 204

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                ++++DS  AL          G      + + M++ LR+L          +V  NQ
Sbjct: 205 ENRYAMLIVDSATALYR----TDYTGRGELAPRQQHMAKFLRRLQRLADEFGIAIVITNQ 260

Query: 203 MRMKIGVMFGS---PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVK 253
           +  K+          +   GGN +   S  RL ++      R   I D  ++  N+    
Sbjct: 261 VIAKVEGGVYCIPDSKKPVGGNVIAHASQTRLYLKKNKGNNRTCKIYDSPNLPSNECVFS 320

Query: 254 VVKNKMASP 262
           + +  +  P
Sbjct: 321 ISELGIGDP 329


>gi|257051990|ref|YP_003129823.1| DNA repair and recombination protein RadB [Halorhabdus utahensis
           DSM 12940]
 gi|256690753|gb|ACV11090.1| DNA repair and recombination protein RadB [Halorhabdus utahensis
           DSM 12940]
          Length = 227

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/228 (24%), Positives = 90/228 (39%), Gaps = 23/228 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + +S+G   +D  LG GG  +G + +IYG  ++GKT LAL    ++   G +  ++D E 
Sbjct: 3   DPISTGCDAVDDLLG-GGLERGAVTQIYGQPAAGKTNLALGAAVETAAAGESALYLDTEG 61

Query: 106 ALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRS-----GAVDIIVIDSVAALT 158
                  +      D+  L      T     E     VR        VD+IV+DS     
Sbjct: 62  VSIDRLEQLADARGDVSELASRIILTEAHTFEEQQEAVRDAEEFASQVDLIVLDSATGFY 121

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
                E + GE+L     R +++ +  L +   +    + F NQ+               
Sbjct: 122 RLERTEQEDGEAL-----RAVARQITHLLALARKHDLAVAFTNQVFSDPDGDRVR---PL 173

Query: 219 GGNALKFYSS--VRLDIRRVGS-----IKDKDSITGNQTRVKVVKNKM 259
           GG+ L  +SS  +RLD  R G       K     TG+  R ++    M
Sbjct: 174 GGHTLNHWSSLVLRLDRFRGGKRRATLEKHHAKATGDTARFQITDAGM 221


>gi|303391399|ref|XP_003073929.1| DNA repair protein Rad51 [Encephalitozoon intestinalis ATCC 50506]
 gi|303303078|gb|ADM12569.1| DNA repair protein Rad51 [Encephalitozoon intestinalis ATCC 50506]
          Length = 334

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 93/244 (38%), Gaps = 32/244 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           +++GS  +D  L  GGF  G I EI+G   +GKT L        Q        GG   ++
Sbjct: 96  LTTGSSEVDKLLN-GGFESGSITEIFGEFRTGKTQLCHTVAVTCQLPPEQGGGGGKAMYI 154

Query: 102 DAEHALDSIY----ARKLGVDLKNLLIS-------QPDTGEQALEITDMLVRSGAVDIIV 150
           D E    S      A + G+D   ++ +         D   Q L     ++      +++
Sbjct: 155 DTEGTFRSERLIPIAERFGLDPDEVMDNISYARAYNSDHQSQLLIKASAMMSESKYSVLI 214

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG-- 208
           IDS  AL          G    G +   +++ LR L +     +  ++  NQ+   +   
Sbjct: 215 IDSATALYR----TDFSGRGELGARQLHLAKYLRSLVNLAETFRVAVIITNQVVSNVDGA 270

Query: 209 --VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMA 260
             +  G  +   GGN +   S+ RL +R      R+  I D   +  ++    + +  + 
Sbjct: 271 VGMFAGDIKKPIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPESEAVFAITEQGIN 330

Query: 261 SPFK 264
            P +
Sbjct: 331 DPDE 334


>gi|149419771|ref|XP_001519391.1| PREDICTED: similar to DMC1 homologue [Ornithorhynchus anatinus]
          Length = 293

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 88/242 (36%), Gaps = 33/242 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           V++GS   D  LG GG     I E +G   +GKT L+      +Q        GG   F+
Sbjct: 54  VTTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFI 112

Query: 102 DAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-----VDI 148
           D E+       R +           L N+L ++  T E  +E+ D +            +
Sbjct: 113 DTENTFRPDRLRDIADRFNLDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKL 172

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           ++IDS+ AL          G      + + ++Q L +L          +   NQM    G
Sbjct: 173 LIIDSIMALFR----VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTSDPG 228

Query: 209 VMFG---SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
                   P+   GG+ L   S+ R+ +R      R+  I D   +  N+    +    +
Sbjct: 229 ATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGI 288

Query: 260 AS 261
             
Sbjct: 289 GD 290


>gi|14279884|gb|AAK58786.1| RecA [Bacteroides fragilis]
 gi|14279886|gb|AAK58787.1| RecA [Bacteroides fragilis]
 gi|14279888|gb|AAK58788.1| RecA [Bacteroides fragilis]
 gi|14279890|gb|AAK58789.1| RecA [Bacteroides fragilis]
 gi|14279892|gb|AAK58790.1| RecA [Bacteroides fragilis]
 gi|14279894|gb|AAK58791.1| RecA [Bacteroides fragilis]
 gi|14279896|gb|AAK58792.1| RecA [Bacteroides fragilis]
 gi|14279898|gb|AAK58793.1| RecA [Bacteroides fragilis]
 gi|14279900|gb|AAK58794.1| RecA [Bacteroides fragilis]
 gi|14279902|gb|AAK58795.1| RecA [Bacteroides fragilis]
 gi|14279904|gb|AAK58796.1| RecA [Bacteroides fragilis]
 gi|14279906|gb|AAK58797.1| RecA [Bacteroides fragilis]
 gi|14279908|gb|AAK58798.1| RecA [Bacteroides fragilis]
 gi|14279910|gb|AAK58799.1| RecA [Bacteroides fragilis]
 gi|14279912|gb|AAK58800.1| RecA [Bacteroides fragilis]
 gi|14279914|gb|AAK58801.1| RecA [Bacteroides fragilis]
 gi|14279916|gb|AAK58802.1| RecA [Bacteroides fragilis]
 gi|14279918|gb|AAK58803.1| RecA [Bacteroides fragilis]
 gi|14279920|gb|AAK58804.1| RecA [Bacteroides fragilis]
 gi|14279924|gb|AAK58806.1| RecA [Bacteroides fragilis]
 gi|14279926|gb|AAK58807.1| RecA [Bacteroides fragilis]
 gi|14279928|gb|AAK58808.1| RecA [Bacteroides fragilis]
 gi|14279930|gb|AAK58809.1| RecA [Bacteroides fragilis]
 gi|14279932|gb|AAK58810.1| RecA [Bacteroides fragilis]
 gi|14279934|gb|AAK58811.1| RecA [Bacteroides fragilis]
 gi|14279936|gb|AAK58812.1| RecA [Bacteroides fragilis]
 gi|14279938|gb|AAK58813.1| RecA [Bacteroides fragilis]
 gi|14279940|gb|AAK58814.1| RecA [Bacteroides fragilis]
 gi|14279942|gb|AAK58815.1| RecA [Bacteroides fragilis]
 gi|14279944|gb|AAK58816.1| RecA [Bacteroides fragilis]
 gi|14279946|gb|AAK58817.1| RecA [Bacteroides fragilis]
 gi|14279948|gb|AAK58818.1| RecA [Bacteroides fragilis]
 gi|14279950|gb|AAK58819.1| RecA [Bacteroides fragilis]
 gi|14279952|gb|AAK58820.1| RecA [Bacteroides fragilis]
 gi|14279954|gb|AAK58821.1| RecA [Bacteroides fragilis]
 gi|14279956|gb|AAK58822.1| RecA [Bacteroides fragilis]
 gi|14279958|gb|AAK58823.1| RecA [Bacteroides fragilis]
 gi|14279960|gb|AAK58824.1| RecA [Bacteroides fragilis]
 gi|14279962|gb|AAK58825.1| RecA [Bacteroides fragilis]
 gi|14279964|gb|AAK58826.1| RecA [Bacteroides fragilis]
 gi|14279966|gb|AAK58827.1| RecA [Bacteroides fragilis]
 gi|14279968|gb|AAK58828.1| RecA [Bacteroides fragilis]
 gi|14279970|gb|AAK58829.1| RecA [Bacteroides fragilis]
 gi|14279972|gb|AAK58830.1| RecA [Bacteroides fragilis]
          Length = 101

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 71/101 (70%), Positives = 86/101 (85%)

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           DAEHA D  YA KLGVD+ NL ISQPD GEQALEI + L+RS A+DIIV+DSVAALTP+A
Sbjct: 1   DAEHAFDRFYAAKLGVDVDNLFISQPDNGEQALEIAEQLIRSSAIDIIVVDSVAALTPKA 60

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           EIEGDMG++  G+QARLMSQALRKLTS++S+++   +FINQ
Sbjct: 61  EIEGDMGDNKVGLQARLMSQALRKLTSAVSKTRTTCIFINQ 101


>gi|14669856|dbj|BAB62025.1| RiLIM15B [Oryza sativa]
          Length = 344

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 101/272 (37%), Gaps = 35/272 (12%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K  EAA   + + +  G+           + +  +++GS  LD  LG GG     I E 
Sbjct: 78  DKICEAAEKLLSQGFMTGS-----DLLIKRKSVVRITTGSQALDELLG-GGIETLCITEA 131

Query: 73  YGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYA----RKLGVD---- 118
           +G   SGKT LA      +Q         G  A++D E             + G+D    
Sbjct: 132 FGEFRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAV 191

Query: 119 LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           L N++ ++  T E    +       +      ++++DSV AL          G      +
Sbjct: 192 LDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAKR 247

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDI 233
            + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +
Sbjct: 248 QQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLML 307

Query: 234 R------RVGSIKDKDSITGNQTRVKVVKNKM 259
           R      RV  I D  ++   +   +V    +
Sbjct: 308 RKGKGEQRVCKIFDAPNLPEGEAVFQVTSGGI 339


>gi|585771|sp|P37384|DMC1_LILLO RecName: Full=Meiotic recombination protein DMC1 homolog
 gi|431168|dbj|BAA04845.1| RAD51-like protein [Lilium longiflorum]
          Length = 349

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 95/245 (38%), Gaps = 30/245 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
            + +  +++GS  LD  LG GG    +I E +G   SGKT +A      +Q         
Sbjct: 107 RKSVIRITTGSQALDELLG-GGIETLQITEAFGEFRSGKTQIAHTLCVSTQLPVSMHGGN 165

Query: 96  GTCAFVDAEHALDSIYA----RKLGVD----LKNLLISQPDTGEQALEI---TDMLVRSG 144
           G  A++D E             + G+D    L N++ ++  T E    +       +   
Sbjct: 166 GKVAYIDTEGTFRPDRIVPIAERFGMDASAVLDNIIYARAYTYEHQYNLLLALAAKMSEE 225

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DSV AL          G      + + ++Q L +LT         +   NQ+ 
Sbjct: 226 PFRLLIVDSVIALFR----VDFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVYMTNQVI 281

Query: 205 MKIGVMFG--SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVK 256
              G       P+   GG+ L   ++VRL +R      RV  I D  ++  ++   ++  
Sbjct: 282 ADPGGGMFISDPKKPAGGHVLAHAATVRLMLRKGKGEQRVCKIFDAPNLPESEAVFQITP 341

Query: 257 NKMAS 261
             +A 
Sbjct: 342 GGVAD 346


>gi|115484153|ref|NP_001065738.1| Os11g0146800 [Oryza sativa Japonica Group]
 gi|21322144|gb|AAK55555.2|AF375982_1 Dmc1 [Oryza sativa Japonica Group]
 gi|14588672|dbj|BAB61838.1| RiLIM15B [Oryza sativa]
 gi|18700485|dbj|BAB85214.1| DMC1 [Oryza sativa Japonica Group]
 gi|21805945|gb|AAM76792.1| Dmc1 protein type B [Oryza sativa Indica Group]
 gi|113644442|dbj|BAF27583.1| Os11g0146800 [Oryza sativa Japonica Group]
          Length = 344

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 101/272 (37%), Gaps = 35/272 (12%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K  EAA   + + +  G+           + +  +++GS  LD  LG GG     I E 
Sbjct: 78  DKICEAAEKLLSQGFMTGS-----DLLIKRKSVVRITTGSQALDELLG-GGIETLCITEA 131

Query: 73  YGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYA----RKLGVD---- 118
           +G   SGKT LA      +Q         G  A++D E             + G+D    
Sbjct: 132 FGEFRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAV 191

Query: 119 LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           L N++ ++  T E    +       +      ++++DSV AL          G      +
Sbjct: 192 LDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAER 247

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDI 233
            + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +
Sbjct: 248 QQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLML 307

Query: 234 R------RVGSIKDKDSITGNQTRVKVVKNKM 259
           R      RV  I D  ++   +   +V    +
Sbjct: 308 RKGKGEQRVCKIFDAPNLPEGEAVFQVTSGGI 339


>gi|222154111|gb|ACM47235.1| disrupted meiotic cDNA 1 protein [Triticum aestivum]
          Length = 344

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 101/272 (37%), Gaps = 35/272 (12%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K  EAA   + + +  G+           + +  +++GS  LD  LG GG     I E 
Sbjct: 78  DKICEAAEKLLSQGFMTGS-----DLLIKRKSVVRITTGSQALDELLG-GGIETLCITEA 131

Query: 73  YGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYA----RKLGVD---- 118
           +G   SGKT LA      +Q         G  A++D E             + G+D    
Sbjct: 132 FGEFRSGKTQLAHTLCVSTQLPLHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAV 191

Query: 119 LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           L N++ ++  T E    +       +      ++++DSV AL          G      +
Sbjct: 192 LDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAER 247

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDI 233
            + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +
Sbjct: 248 QQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLML 307

Query: 234 R------RVGSIKDKDSITGNQTRVKVVKNKM 259
           R      RV  I D  ++   +   ++    +
Sbjct: 308 RKSKGEQRVCKIFDAPNLPEGEAVFQITTGGL 339


>gi|91080301|ref|XP_974146.1| PREDICTED: similar to RAD51 homolog protein [Tribolium castaneum]
 gi|270006417|gb|EFA02865.1| spindle A-like protein [Tribolium castaneum]
          Length = 338

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 92/244 (37%), Gaps = 31/244 (12%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            I  +++GS  LD  LG GG   G I EI+G   +GKT +        Q +       G 
Sbjct: 97  NIIQLTTGSKELDKLLG-GGIETGSITEIFGEFRTGKTQICHTLAVTCQLSVESGGGEGK 155

Query: 98  CAFVDAEHALDSIY----ARKLGVD----LKNLLISQPDTGEQALEI---TDMLVRSGAV 146
           C ++D E           A +  +D    L N++ ++    +   E+      ++     
Sbjct: 156 CLYIDTEGTFRPERLLPVAERYNMDGQQVLDNVVFARAFNTDHQTELLVHAAAMMMESRY 215

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++++DS  +L          G      +   +++ LR L          +V  NQ+  +
Sbjct: 216 CLLIVDSATSLYR----TDYSGRGELSARQNHLARFLRMLLRLADEFGVAVVLTNQVVAQ 271

Query: 207 IG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKN 257
           +    +    P+   GGN +   S+ RL +R      RV  I D   +  ++    +  +
Sbjct: 272 VDGAAMFNADPKKPIGGNIMAHSSTTRLSLRKGRGEARVCKIYDSPCLPESEAIFAIRPD 331

Query: 258 KMAS 261
            +  
Sbjct: 332 GIGD 335


>gi|72549845|ref|XP_843593.1| RAD51/dmc1 protein [Leishmania major strain Friedlin]
 gi|3132711|gb|AAC16335.1| Dmc1 homolog [Leishmania major]
 gi|323364112|emb|CBZ13119.1| RAD51/dmc1 protein [Leishmania major strain Friedlin]
          Length = 364

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 59/275 (21%), Positives = 102/275 (37%), Gaps = 35/275 (12%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K +EAA    +  +  G+   L  + ++      +S+GS  LD  LG GG     I E 
Sbjct: 96  DKIIEAARRVSEVGFITGS-SCLQQRSTLL----RISTGSTALDQLLGGGGIESRSITEA 150

Query: 73  YGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYA----RKLGVD---- 118
           +G   +GKT +        Q         G   +VD E             + G+D    
Sbjct: 151 FGEFRTGKTQIGHTLCVTCQLPLEMGGGNGKAVYVDTEGTFRPERIRPIAERFGMDSNSV 210

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVD---IIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           L N+L+++  T E    +  M+    A D   ++V+DS+ AL          G      +
Sbjct: 211 LDNILVARAYTHEHQAHLLSMVAAKMAEDQFSLLVVDSITALFR----VDFSGRGELAER 266

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKI---GVMFGSPETTTGGNALKFYSSVRLD 232
            + +++ L +L          +   NQ+        +    P+   GG+ L   S+ RL 
Sbjct: 267 QQKLAKMLSQLIKIAEEFNIAVYITNQVVSDPGGASMFVADPKKPVGGHILAHASTTRLS 326

Query: 233 IR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
           +R      RV  I D  S+   +    + +  +  
Sbjct: 327 LRKGRGDQRVCKIFDSPSLPELECVYSISEQGIID 361


>gi|10944306|dbj|BAB16892.1| DMC1 [Cynops pyrrhogaster]
          Length = 342

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 90/242 (37%), Gaps = 33/242 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +++GS   D  LG GG     I E +G   +GKT L+      +Q       TGG   F+
Sbjct: 103 ITTGSQEFDKLLG-GGIESMAITETFGEFRTGKTQLSHTLCVTAQLPGTDGYTGGKVIFI 161

Query: 102 DAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-----VDI 148
           D E+       R +           L N+L ++  T E  +E+ D +            +
Sbjct: 162 DTENTFRPDRLRDIADRFSVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKL 221

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +VIDS+ AL          G      + + ++Q L +L          +   NQM    G
Sbjct: 222 LVIDSIMALFR----VDFSGRGELAERQQKLAQMLARLQKISEEYNVAVFVTNQMTADPG 277

Query: 209 VMFG---SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
                   P+   GG+ L   S+ R+ +R      R+  I D   +  N+    +    +
Sbjct: 278 AAMSFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPDMPENEATFAITAGGI 337

Query: 260 AS 261
           + 
Sbjct: 338 SD 339


>gi|296811726|ref|XP_002846201.1| meiotic recombination protein dmc1 [Arthroderma otae CBS 113480]
 gi|238843589|gb|EEQ33251.1| meiotic recombination protein dmc1 [Arthroderma otae CBS 113480]
          Length = 342

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 57/259 (22%), Positives = 96/259 (37%), Gaps = 35/259 (13%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG Q    + +  +S+GS   D  LG GGF    I E+YG    GKT L+      +Q
Sbjct: 91  MELGHQ---RKRVVKISTGSKQFDSILG-GGFQSMSISEVYGEFRCGKTQLSHTMSVIAQ 146

Query: 93  ------KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITD 138
                    G  A++D E         ++           L+N+  ++    E  LE+ +
Sbjct: 147 LPKDMGGAEGKAAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELLN 206

Query: 139 ---MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
                  SG   +++IDS+     R +  G         + + ++Q L KL         
Sbjct: 207 TLAKEFASGEYRLLIIDSIMNCF-RVDYCGR---GELADRQQKLNQFLMKLAHMAEEFNV 262

Query: 196 ILVFINQMRMKIGVM----FGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
            ++  NQ++   G              GG+ L   S+ R+ +R      RV  I+D    
Sbjct: 263 CVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTRVLLRKGRGDERVAKIQDSPDC 322

Query: 246 TGNQTRVKVVKNKMASPFK 264
              +    +    +  P K
Sbjct: 323 PEREATYVITNGGINDPEK 341


>gi|19074882|ref|NP_586388.1| DNA REPAIR PROTEIN RAD51 HOMOLOG [Encephalitozoon cuniculi GB-M1]
 gi|19069607|emb|CAD25992.1| DNA REPAIR PROTEIN RAD51 HOMOLOG [Encephalitozoon cuniculi GB-M1]
          Length = 334

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 93/244 (38%), Gaps = 32/244 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           +++GS  +D  L  GGF  G I EI+G   +GKT L        Q        GG   ++
Sbjct: 96  LTTGSSEVDKLLS-GGFESGSITEIFGEFRTGKTQLCHTVAVTCQLPPEQGGGGGKAMYI 154

Query: 102 DAEHALDSIY----ARKLGVDLKNLLIS-------QPDTGEQALEITDMLVRSGAVDIIV 150
           D E    S      A + G+D   ++ +         D   Q L     ++      +++
Sbjct: 155 DTEGTFRSERLVPIAERFGLDPNEVMDNISYARAYNSDHQSQLLIKASAMMSESKYSVLI 214

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG-- 208
           IDS  AL          G    G +   +++ LR L +     +  ++  NQ+   +   
Sbjct: 215 IDSATALYR----TDFSGRGELGARQLHLAKYLRSLVNLAETFRIAVIITNQVVSNVDGA 270

Query: 209 --VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMA 260
             +  G  +   GGN +   S+ RL +R      R+  I D   +  ++    + +  + 
Sbjct: 271 VGMFTGDIKKPIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPESEAVFAITEQGIN 330

Query: 261 SPFK 264
            P +
Sbjct: 331 DPDE 334


>gi|37931470|gb|AAP13463.1| Rad51p [Kluyveromyces lactis]
          Length = 369

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 96/258 (37%), Gaps = 34/258 (13%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              +  +++GS  LD  LG GG   G I E++G   +GK+ L        Q         
Sbjct: 123 RNEMICLTTGSKNLDTLLG-GGIETGSITELFGEFRTGKSQLCHTLAVTCQIPLDMGGGE 181

Query: 96  GTCAFVDAEHALDSIY----ARKLGVDLK----NLLISQPDTGEQALEI---TDMLVRSG 144
           G C ++D E     I     A++ G+D      N+  ++    +  L++      ++   
Sbjct: 182 GKCLYIDTEGTFRPIRLVSIAQRFGLDPDDALNNVAYARAYNADHQLKLLDAAAQMMSES 241

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              +I++DS+ AL  R +  G    S   M    +++ +R L     +     V  NQ+ 
Sbjct: 242 RFSLIIVDSIMALY-RTDFSGRGELSARQMH---LAKFMRSLQRLADQFGVAAVVTNQVV 297

Query: 205 MKIGVMFG---SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
            ++         P+   GGN +   S+ RL  ++           G Q   KVV +    
Sbjct: 298 AQVDGGMMFNPDPKKPFGGNIMAHSSTTRLGFKKGK---------GPQRYCKVVDSPCLP 348

Query: 262 PFKQVEFDIMYGEGISFF 279
             + V      G G    
Sbjct: 349 EAECVFAIYEDGIGDPRE 366


>gi|3219787|sp|Q96449|DMC1_SOYBN RecName: Full=Meiotic recombination protein DMC1 homolog
 gi|1518157|gb|AAB07025.1| RecA/Rad51/DMC1-like protein [Glycine max]
          Length = 345

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 63/280 (22%), Positives = 100/280 (35%), Gaps = 39/280 (13%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K  EAA   +   Y  G+           + +  +++GS  LD  LG GG     I E 
Sbjct: 79  DKICEAAEKLVNFGYITGS-----DALLKRKSVIRITTGSQALDELLG-GGVETSAITEA 132

Query: 73  YGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYA----RKLGVD---- 118
           +G   SGKT LA      +Q         G  A++D E             + G+D    
Sbjct: 133 FGEFRSGKTQLAHTLCVSTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAV 192

Query: 119 LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           L N++ ++  T E    +       +      ++++DSV AL          G      +
Sbjct: 193 LDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFR----VDFSGRGELADR 248

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKI--GVMFGSPETTTGGNALKFYSSVRLDI 233
            + ++Q L +L          +   NQ+      GV    P+   GG+ L   ++VRL  
Sbjct: 249 QQKLAQMLSRLIKIAEEFNVAVYMTNQVISDPGGGVFVTDPKKPAGGHVLAHAATVRLMF 308

Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
           R+           G Q   K V +    P  +  F I  G
Sbjct: 309 RKGK---------GEQRICK-VFDAPNLPEAEAVFQITAG 338


>gi|67477127|ref|XP_654076.1| DNA repair protein RAD51 [Entamoeba histolytica HM-1:IMSS]
 gi|56471096|gb|EAL48690.1| DNA repair protein RAD51, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 366

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 89/250 (35%), Gaps = 32/250 (12%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------ 92
            ++ +    +++GS  LD  L  GGF  G I E++G   +GKT L        Q      
Sbjct: 118 NNLRKETIRITTGSRELDKLL-CGGFETGSITELFGEFRTGKTQLCHQLCVTCQLGIENG 176

Query: 93  KTGGTCAFVDAEHALDSIYARKLG-----------VDLKNLLISQPDTGEQALEITDMLV 141
            T G   ++D E         ++             ++        +   Q L++   L+
Sbjct: 177 GTEGRAIYIDTEGTFRPERLTQIAEKYGLNSEEALNNVAVARAHNTEHQMQLLQMASGLM 236

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
                 +++IDS  AL          G      +   +++ LR L          +V  N
Sbjct: 237 AKERYGLLIIDSATALYR----TDYSGRGELASRQMHLAKFLRALQRIADEFSVAVVLTN 292

Query: 202 QMRMKIG----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTR 251
           Q+  ++     +  G  +   GGN +   S+ RL +R      R+  + D   +  ++  
Sbjct: 293 QVVAQVDGQASMFGGDTKKPVGGNIIAHASTTRLYLRKGKGEARICKVYDSPCLPESEAS 352

Query: 252 VKVVKNKMAS 261
             +  N +  
Sbjct: 353 FAITTNGIED 362


>gi|325968380|ref|YP_004244572.1| DNA repair and recombination protein RadA [Vulcanisaeta moutnovskia
           768-28]
 gi|323707583|gb|ADY01070.1| DNA repair and recombination protein RadA [Vulcanisaeta moutnovskia
           768-28]
          Length = 358

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 97/248 (39%), Gaps = 32/248 (12%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH---TIAQSQKTGG 96
               GI  +S+G   LD  LG GG     I E+ G   SGKT L       +   +  GG
Sbjct: 119 EKRRGIRRISTGVKALDELLG-GGIETKAITELVGEFGSGKTQLCHQLSIIVQLPEDRGG 177

Query: 97  T---CAFVDAEHALDSIYARKLGV--------DLKNLLISQPDTGEQALEITD---MLVR 142
                 +VD E+        ++           L+N+L ++    +  + I +    ++ 
Sbjct: 178 LKAKALYVDTENTFRPERIMQIAKYRGLDPQEALRNILYARAYNSDHQMMIIEESKKIIE 237

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
              + +IVIDS+ A   R+E  G         + + ++  + +L          +V  NQ
Sbjct: 238 KENIGLIVIDSLVAHF-RSEYPGREN---LAERQQKLNHHIAQLLRIADIYNVAVVVTNQ 293

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +  +  V FG+P    GGN +   ++ R+ +R+               R+  + +    P
Sbjct: 294 VVAQPDVFFGNPLKPAGGNVIAHGATYRVWLRKGKE----------NVRIAKIFDSPYHP 343

Query: 263 FKQVEFDI 270
            ++V F I
Sbjct: 344 EREVTFRI 351


>gi|296191896|ref|XP_002743822.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog isoform
           1 [Callithrix jacchus]
          Length = 339

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 88/242 (36%), Gaps = 33/242 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +++GS   D  LG GG     I E +G   +GKT L+      +Q        GG   F+
Sbjct: 100 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGDYPGGKIIFI 158

Query: 102 DAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-----VDI 148
           D E+       R +           L N+L ++  T E  +E+ D +            +
Sbjct: 159 DTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEPGIFKL 218

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           ++IDS+ AL          G      + + ++Q L +L          +   NQM    G
Sbjct: 219 LIIDSIMALFR----VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPG 274

Query: 209 VMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
                   P+   GG+ L   S+ R+ +R      R+  I D   +  N+    +    +
Sbjct: 275 ATMTFQPDPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGI 334

Query: 260 AS 261
             
Sbjct: 335 GD 336


>gi|301098091|ref|XP_002898139.1| DNA repair protein RAD51 [Phytophthora infestans T30-4]
 gi|262105500|gb|EEY63552.1| DNA repair protein RAD51 [Phytophthora infestans T30-4]
          Length = 338

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 96/277 (34%), Gaps = 38/277 (13%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K ++ V   K L+AA   +   +   A           + +  +S+GS  +D  L  GG 
Sbjct: 64  KGISEVKAEKMLKAAREMVNVGFTTAA-----DVLESRKDLITLSTGSNAVDELL-KGGI 117

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKLGVD 118
             G I E++G   +GKT L        Q         G   ++D E        + +   
Sbjct: 118 ETGSITEMFGEFRTGKTQLCHQLCVTCQLPVDRGGGEGKALYIDTEGTFRPQRLQAIAER 177

Query: 119 --------LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
                   L N+  ++    E  +++      ++      ++++DS  AL          
Sbjct: 178 YGLDGDSVLDNVAFARAYNSEHQMQLLIQASAMMAESRFALVIVDSATALFR----TDYS 233

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE--TTTGGNALKF 225
           G      + + +++ LR LT         +V  NQM         + +     GGN +  
Sbjct: 234 GRGELAARQQELAKFLRALTRMADEFGVAVVITNQMTANPDSGMFAKDPLQPIGGNIMAH 293

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
            S  RL +++           G    +KVV + +   
Sbjct: 294 ASCTRLRLKKGR---------GENRVMKVVDSPILPE 321


>gi|225717836|gb|ACO14764.1| DNA repair protein RAD51 homolog 1 [Caligus clemensi]
          Length = 346

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 57/294 (19%), Positives = 99/294 (33%), Gaps = 39/294 (13%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K ++     K L  +   I   +     M +         I  +++GS  LD  L  GG 
Sbjct: 71  KGISEAKADKLLAESQKLIPTGFTTATEMHM-----RRSQIIQITTGSKELDKLL-KGGI 124

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKL--- 115
             G I E++G   +GK+ L        Q         G C ++D E          +   
Sbjct: 125 ETGSITELFGEFRTGKSQLCHTLAVTCQLPIDHGGAEGKCLYIDTEGTFRPERLLAVAER 184

Query: 116 -----GVDLKNLLISQPDTGEQA---LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
                   L N+  ++    +     L     ++      +I++DS  AL  R +  G  
Sbjct: 185 YSLSGNDVLDNVAYARAYNSDHQSQLLIQASAMMAESRYALIIVDSSTALY-RTDYSGRG 243

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG---VMFGSPETTTGGNALK 224
             S   M    +++ LR L          +V  NQ+  ++    +    P+   GGN + 
Sbjct: 244 ELSTRQMH---LARFLRMLLRLADEFGVGVVITNQVVAQVDGAAMFAADPKKPIGGNIMA 300

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISF 278
             S+ RL  R+           G Q   K+  +   +  + V      G G + 
Sbjct: 301 HASTTRLYFRKGR---------GEQRICKIYDSPCLAEGEAVFAINADGIGDAK 345


>gi|242082562|ref|XP_002441706.1| hypothetical protein SORBIDRAFT_08g001020 [Sorghum bicolor]
 gi|241942399|gb|EES15544.1| hypothetical protein SORBIDRAFT_08g001020 [Sorghum bicolor]
          Length = 344

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 59/272 (21%), Positives = 102/272 (37%), Gaps = 35/272 (12%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K  EAA   + + +  G  + L  +      +  +++GS  LD  LG GG     I E 
Sbjct: 78  DKICEAAEKLLNQGFMTGNDLLLKRKS-----VVRITTGSQALDELLG-GGIETLCITEA 131

Query: 73  YGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYA----RKLGVD---- 118
           +G   SGKT LA      +Q         G  A++D E             + G+D    
Sbjct: 132 FGEFRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAV 191

Query: 119 LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           L N++ ++  T E    +       +      ++++DSV AL          G      +
Sbjct: 192 LDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAER 247

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDI 233
            + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +
Sbjct: 248 QQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLML 307

Query: 234 R------RVGSIKDKDSITGNQTRVKVVKNKM 259
           R      RV  I D  ++   +   +V    +
Sbjct: 308 RKGKGEQRVCKIFDAPNLPEGEAVFQVTSGGI 339


>gi|167387582|ref|XP_001738222.1| DNA repair protein rad51 [Entamoeba dispar SAW760]
 gi|165898654|gb|EDR25461.1| DNA repair protein rad51, putative [Entamoeba dispar SAW760]
          Length = 365

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 89/250 (35%), Gaps = 32/250 (12%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------ 92
            ++ +    +++GS  LD  L  GGF  G I E++G   +GKT L        Q      
Sbjct: 117 NNLRKETIRITTGSRELDKLL-CGGFETGSITELFGEFRTGKTQLCHQLCVTCQLGIENG 175

Query: 93  KTGGTCAFVDAEHALDSIYARKLG-----------VDLKNLLISQPDTGEQALEITDMLV 141
            T G   ++D E         ++             ++        +   Q L++   L+
Sbjct: 176 GTEGRAIYIDTEGTFRPERLTQIAEKYGLNSEEALNNVAVARAHNTEHQMQLLQMASGLM 235

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
                 +++IDS  AL          G      +   +++ LR L          +V  N
Sbjct: 236 AKERYGLLIIDSATALYR----TDYSGRGELASRQMHLAKFLRALQRIADEFSVAVVLTN 291

Query: 202 QMRMKIG----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTR 251
           Q+  ++     +  G  +   GGN +   S+ RL +R      R+  + D   +  ++  
Sbjct: 292 QVVAQVDGQASMFGGDTKKPVGGNIIAHASTTRLYLRKGKGEARICKVYDSPCLPESEAS 351

Query: 252 VKVVKNKMAS 261
             +  N +  
Sbjct: 352 FAITTNGIED 361


>gi|65321106|ref|ZP_00394065.1| COG0468: RecA/RadA recombinase [Bacillus anthracis str. A2012]
          Length = 112

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 76/108 (70%), Positives = 94/108 (87%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           +D +YA+KLGV++  LL+SQPDTGEQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGD
Sbjct: 1   MDPVYAQKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGD 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           MG+S  G+QARLMSQALRKL+ +I++SK I +FINQ+R K+GVMFG+ 
Sbjct: 61  MGDSHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNQ 108


>gi|148643393|ref|YP_001273906.1| DNA repair and recombination protein RadA [Methanobrevibacter
           smithii ATCC 35061]
 gi|222445636|ref|ZP_03608151.1| hypothetical protein METSMIALI_01276 [Methanobrevibacter smithii
           DSM 2375]
 gi|166218764|sp|A5UMW0|RADA_METS3 RecName: Full=DNA repair and recombination protein radA
 gi|148552410|gb|ABQ87538.1| DNA repair protein RadA, RadA [Methanobrevibacter smithii ATCC
           35061]
 gi|222435201|gb|EEE42366.1| hypothetical protein METSMIALI_01276 [Methanobrevibacter smithii
           DSM 2375]
          Length = 311

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 96/246 (39%), Gaps = 29/246 (11%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
                +  +S GS G +  +G GG     I E++G   SGK+ ++       Q       
Sbjct: 71  ERRRDVGHISVGSEGFNDLIG-GGIETQSITEVFGEFGSGKSQISHELAVTVQLPPEKGG 129

Query: 94  TGGTCAFVDAEHALDSIYARKLGV--------DLKNLLISQPDTGEQAL----EITDMLV 141
             G C F+D E+        ++           L+ + +++       +    +I +++ 
Sbjct: 130 LDGECVFIDTENTFRPERIEQIANGFELDIDEVLQKIHVARAFNSSHQILMAEKINELIQ 189

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           +   + ++++DS+ A   RAE  G        ++ + ++Q L  L    +     +   N
Sbjct: 190 QGNNIKLVIVDSLMAHF-RAEYVGR---ESLAVRQQKLNQHLHALQQIANTYNVAVFITN 245

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDI------RRVGSIKDKDSITGNQTRVKVV 255
           Q++ K    FGSP    GG+ L   S+ R+ +      +R+  + D   +   +   K+ 
Sbjct: 246 QVQAKPDSFFGSPTKAIGGHVLGHASTYRIWLKKGLAGKRIARLVDSPHLPEGECVFKIK 305

Query: 256 KNKMAS 261
              +  
Sbjct: 306 TEGIVD 311


>gi|315043933|ref|XP_003171342.1| meiotic recombinase Dmc1 [Arthroderma gypseum CBS 118893]
 gi|311343685|gb|EFR02888.1| meiotic recombinase Dmc1 [Arthroderma gypseum CBS 118893]
          Length = 337

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 96/259 (37%), Gaps = 35/259 (13%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG Q    + +  +S+GS   D  LG GGF    I E+YG    GKT L+      +Q
Sbjct: 86  MELGHQ---RKRVVKISTGSKQFDSILG-GGFQSMSISEVYGEFRCGKTQLSHTMSVIAQ 141

Query: 93  ------KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITD 138
                    G  A++D E         ++           L+N+  ++    E  LE+ +
Sbjct: 142 LPKDMGGAEGKAAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELLN 201

Query: 139 ---MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
                  SG   +++IDS+     R +  G         + + ++Q L KL         
Sbjct: 202 TLAKEFASGEYRLLIIDSIMNCF-RVDYCGRGE---LADRQQKLNQFLMKLAHMAEEFNV 257

Query: 196 ILVFINQMRMKIGVM----FGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
            ++  NQ++   G              GG+ L   S+ R+ +R      RV  ++D    
Sbjct: 258 CVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTRVLLRKGRGDERVAKVQDSPDC 317

Query: 246 TGNQTRVKVVKNKMASPFK 264
              +    +    +  P K
Sbjct: 318 PEREATYVITNGGINDPEK 336


>gi|1066001|dbj|BAA09932.1| HsLim15 [Homo sapiens]
          Length = 340

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 88/242 (36%), Gaps = 33/242 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +++GS   D  LG GG     I E +G   +GKT L+      +Q        GG   F+
Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFI 159

Query: 102 DAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-----VDI 148
           D E+       R +           L N+L ++  T E  +E+ D +            +
Sbjct: 160 DTENTFRPDRLRDIADRFNVDHDPVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKL 219

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           ++IDS+ AL          G      + + ++Q L +L          +   NQM    G
Sbjct: 220 LIIDSIMALFR----VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPG 275

Query: 209 VMFG---SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
                   P+   GG+ L   S+ R+ +R      R+  I D   +  N+    +    +
Sbjct: 276 ATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGI 335

Query: 260 AS 261
             
Sbjct: 336 GD 337


>gi|195037391|ref|XP_001990144.1| GH18396 [Drosophila grimshawi]
 gi|193894340|gb|EDV93206.1| GH18396 [Drosophila grimshawi]
          Length = 352

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/263 (18%), Positives = 94/263 (35%), Gaps = 35/263 (13%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----- 94
            +   + ++++GS  LD  LG GG   G I EI+G    GKT +        Q       
Sbjct: 104 QMRSEVVMLTTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQICHTLAVTCQLPISQNG 162

Query: 95  -GGTCAFVDAEHALDSI--------YARKLGVDLKNLLISQPDTGEQALEITDM---LVR 142
             G   ++D E              Y+ +    L N+  ++    +Q  ++  M   ++ 
Sbjct: 163 GEGKALYIDTEGTFRPERLSAIAQRYSMEEADVLDNVACARAHNTDQQTKLVQMAAGMMF 222

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                +I++DS  AL  R+E    +G      +   +   LR L          +V  NQ
Sbjct: 223 ESRYALIIVDSAMALY-RSEY---IGRGELAARQNHLGLFLRMLQRLADEFGVAVVITNQ 278

Query: 203 MRMKIG----VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           +  ++     +     +   GG+ +   S+ RL +R+           G+    K+  + 
Sbjct: 279 VTAQVDGGASMFQADAKKPIGGHIMAHASTTRLYLRKGK---------GDARICKIYDSP 329

Query: 259 MASPFKQVEFDIMYGEGISFFGE 281
                + +   +  G G     +
Sbjct: 330 CLPESEAMFAILPEGIGDVKEND 352


>gi|318066037|ref|NP_001187314.1| meiotic recombination protein DMC1/LIM15 homolog [Ictalurus
           punctatus]
 gi|308322693|gb|ADO28484.1| meiotic recombination protein dmc1/lim15-like protein [Ictalurus
           punctatus]
          Length = 342

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 91/242 (37%), Gaps = 33/242 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +++GSL  D  LG GG     I E +G   +GKT L+      +Q       +GG   F+
Sbjct: 103 ITTGSLEFDKLLG-GGVESMAITEAFGEFRTGKTQLSHTLCVTAQLPGENGYSGGKIIFI 161

Query: 102 DAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-----VDI 148
           DAE+       + +           L N+L ++  T E  +E+ D +            +
Sbjct: 162 DAENTFRPDRLKDIADRFNVDHEAVLDNVLYARAYTSEHQMELLDFVAAKFHEEGGVFKL 221

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI- 207
           ++IDS+ AL          G      + + ++Q L +L          +   NQM     
Sbjct: 222 LIIDSIMALFR----VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPG 277

Query: 208 --GVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
                   P+   GG+ L   S+ R+ +R      R+  I D   I  N+    +    +
Sbjct: 278 AGMTFQADPKKPIGGHILAHASTTRISLRKGRGEMRIAKIFDSPDIPENEATFAITAGGV 337

Query: 260 AS 261
           A 
Sbjct: 338 AD 339


>gi|114686387|ref|XP_515130.2| PREDICTED: similar to Chain A, Crystal Structure Of The Human Dmc1
           Protein [Pan troglodytes]
          Length = 340

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 88/242 (36%), Gaps = 33/242 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +++GS   D  LG GG     I E +G   +GKT L+      +Q        GG   F+
Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFI 159

Query: 102 DAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-----VDI 148
           D E+       R +           L N+L ++  T E  +E+ D +            +
Sbjct: 160 DTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKL 219

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           ++IDS+ AL          G      + + ++Q L +L          +   NQM    G
Sbjct: 220 LIIDSIMALFR----VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPG 275

Query: 209 VMFG---SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
                   P+   GG+ L   S+ R+ +R      R+  I D   +  N+    +    +
Sbjct: 276 ATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGI 335

Query: 260 AS 261
             
Sbjct: 336 GD 337


>gi|18461373|gb|AAL71907.1|AF265548_1 meiotic protein Dmc1A [Oryza sativa Indica Group]
          Length = 344

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 100/272 (36%), Gaps = 35/272 (12%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K  EAA   + + +  G+           + +  +++GS  LD  LG GG     I E 
Sbjct: 78  DKICEAAEKLLSQGFITGS-----DLLIKRKSVVRITTGSQALDKLLG-GGIETLCITEA 131

Query: 73  YGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYA----RKLGVD---- 118
           +G   SGKT LA      +Q         G  A++D E             + G+D    
Sbjct: 132 FGEFRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAV 191

Query: 119 LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           L N++ ++  T E    +       +      ++++DSV AL          G      +
Sbjct: 192 LDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAER 247

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE--TTTGGNALKFYSSVRLDI 233
            + ++Q L +LT         +   NQ+    G      +     GG+ L   +++RL +
Sbjct: 248 QQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDLKKPAGGHVLAHAATIRLML 307

Query: 234 R------RVGSIKDKDSITGNQTRVKVVKNKM 259
           R      RV  I D  ++   +   +V    +
Sbjct: 308 RKGKGEQRVCKIFDAPNLPEGEAVFQVTSGGI 339


>gi|197092367|gb|ACH42256.1| disrupted meiotic cDNA 1 protein [Triticum aestivum]
 gi|222154115|gb|ACM47237.1| disrupted meiotic cDNA 1 protein [Triticum aestivum]
          Length = 344

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 101/272 (37%), Gaps = 35/272 (12%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K  EAA   + + +  G+           + +  +++GS  LD  LG GG     I E 
Sbjct: 78  DKICEAAEKLLSQGFMTGS-----DLLIKRKSVVRITTGSQTLDELLG-GGIETLCITEA 131

Query: 73  YGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYA----RKLGVD---- 118
           +G   SGKT LA      +Q         G  A++D E             + G+D    
Sbjct: 132 FGEFRSGKTQLAHTLCVSTQLPLHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAV 191

Query: 119 LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           L N++ ++  T E    +       +      ++++DSV AL          G      +
Sbjct: 192 LDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAER 247

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDI 233
            + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +
Sbjct: 248 QQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLML 307

Query: 234 R------RVGSIKDKDSITGNQTRVKVVKNKM 259
           R      RV  I D  ++   +   ++    +
Sbjct: 308 RKGKGEQRVCKIFDAPNLPEGEAVFQITTGGL 339


>gi|18461375|gb|AAL71908.1|AF265549_1 meiotic protein Dmc1B [Oryza sativa Indica Group]
          Length = 344

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 101/272 (37%), Gaps = 35/272 (12%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K  EAA   + + +  G+           + +  +++GS  LD  LG GG     I E 
Sbjct: 78  DKICEAAEKLLSQGFMTGS-----DLLIKRKSVVRITTGSQALDELLG-GGIETLCITEA 131

Query: 73  YGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYA----RKLGVD---- 118
           +G   SGKT LA      +Q         G  A++D E             + G+D    
Sbjct: 132 FGEFRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAV 191

Query: 119 LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           L N++ ++  T E    +       +      ++++DSV AL          G      +
Sbjct: 192 LDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAER 247

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDI 233
            + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +
Sbjct: 248 QQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLML 307

Query: 234 R------RVGSIKDKDSITGNQTRVKVVKNKM 259
           R      RV  I D  ++   +   +V    +
Sbjct: 308 RKGKGEQRVCKIFDAPNLPEGEAVFQVTSGGI 339


>gi|1321636|dbj|BAA10970.1| DMC1 homologue [Homo sapiens]
          Length = 340

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 88/242 (36%), Gaps = 33/242 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +++GS   D  LG GG     I E +G   +GKT L+      +Q        GG   F+
Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFI 159

Query: 102 DAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-----VDI 148
           D E+       R +           L N+L ++  T E  +E+ D +            +
Sbjct: 160 DTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKL 219

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           ++IDS+ AL          G      + + ++Q L +L          +   NQM    G
Sbjct: 220 LIIDSIMALFR----VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPG 275

Query: 209 VMFG---SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
                   P+   GG+ L   S+ R+ +R      R+  I D   +  N+    +    +
Sbjct: 276 ATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGI 335

Query: 260 AS 261
             
Sbjct: 336 GD 337


>gi|71018413|ref|XP_759437.1| DNA repair protein RAD51 [Ustilago maydis 521]
 gi|2500102|sp|Q99133|RAD51_USTMA RecName: Full=DNA repair protein RAD51
 gi|1480734|gb|AAC61878.1| Rad51 [Ustilago maydis]
 gi|46099044|gb|EAK84277.1| RA51_USTMA DNA repair protein RAD51 [Ustilago maydis 521]
          Length = 339

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 92/241 (38%), Gaps = 34/241 (14%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              +  +++GS  LD  LG GG   G I E+YG   +GK+ L        Q         
Sbjct: 96  RNELISITTGSKNLDAILG-GGMETGSITELYGEFRTGKSQLCHTLAVTCQLPVDMGGGE 154

Query: 96  GTCAFVDAEHALDSIY----ARKLGVD----LKNLLISQPDTGEQALEI---TDMLVRSG 144
           G C ++D E+          A + G++    L N+  ++    +  L++      ++   
Sbjct: 155 GKCLYIDTENTFRPTRLLAVAERFGLNGEEVLDNVAYARAYNADHQLQLLMQASAMMAES 214

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS+ +L  R +  G    S   M    +++ LR L          +V  NQ+ 
Sbjct: 215 RFSLLIVDSLTSLY-RTDFSGRGELSARQMH---LAKFLRGLMRLADEFGVAVVITNQVV 270

Query: 205 MKIG---VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
            ++          +   GGN +   S+ RL +R+           GNQ   ++  +    
Sbjct: 271 AQVDGATAFTADAKKPIGGNIVAHASTTRLSLRKGR---------GNQRICRIADSPCLP 321

Query: 262 P 262
            
Sbjct: 322 E 322


>gi|49259489|pdb|1V5W|A Chain A, Crystal Structure Of The Human Dmc1 Protein
 gi|49259490|pdb|1V5W|B Chain B, Crystal Structure Of The Human Dmc1 Protein
          Length = 343

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 88/242 (36%), Gaps = 33/242 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +++GS   D  LG GG     I E +G   +GKT L+      +Q        GG   F+
Sbjct: 104 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFI 162

Query: 102 DAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-----VDI 148
           D E+       R +           L N+L ++  T E  +E+ D +            +
Sbjct: 163 DTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKL 222

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           ++IDS+ AL          G      + + ++Q L +L          +   NQM    G
Sbjct: 223 LIIDSIMALFR----VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPG 278

Query: 209 VMFG---SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
                   P+   GG+ L   S+ R+ +R      R+  I D   +  N+    +    +
Sbjct: 279 ATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGI 338

Query: 260 AS 261
             
Sbjct: 339 GD 340


>gi|218186424|gb|EEC68851.1| hypothetical protein OsI_37443 [Oryza sativa Indica Group]
          Length = 396

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 91/244 (37%), Gaps = 29/244 (11%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K  EAA   + + +  G+           + +  +++GS  LD  LG GG     I E 
Sbjct: 78  DKICEAAEKLLSQGFITGS-----DLLIKRKSVVRITTGSQALDKLLG-GGIETLCITEA 131

Query: 73  YGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYA----RKLGVD---- 118
           +G   SGKT LA      +Q         G  A++D E             + G+D    
Sbjct: 132 FGEFRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAV 191

Query: 119 LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           L N++ ++  T E    +       +      ++++DSV AL          G      +
Sbjct: 192 LDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAER 247

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE--TTTGGNALKFYSSVRLDI 233
            + ++Q L +LT         +   NQ+    G      +     GG+ L   +++RL +
Sbjct: 248 QQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDLKKPAGGHVLAHAATIRLML 307

Query: 234 RRVG 237
           R+  
Sbjct: 308 RKGK 311


>gi|23238219|ref|NP_008999.2| meiotic recombination protein DMC1/LIM15 homolog [Homo sapiens]
 gi|109094191|ref|XP_001094012.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog [Macaca
           mulatta]
 gi|13878923|sp|Q14565|DMC1_HUMAN RecName: Full=Meiotic recombination protein DMC1/LIM15 homolog
 gi|5139483|emb|CAB45656.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
           recombination (yeast) [Homo sapiens]
 gi|40786809|gb|AAR89915.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
           recombination (yeast) [Homo sapiens]
 gi|47678503|emb|CAG30372.1| DMC1 [Homo sapiens]
 gi|109451232|emb|CAK54477.1| DMC1 [synthetic construct]
 gi|109451810|emb|CAK54776.1| DMC1 [synthetic construct]
 gi|115528933|gb|AAI25164.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
           recombination (yeast) [Homo sapiens]
 gi|115529065|gb|AAI25165.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
           recombination (yeast) [Homo sapiens]
 gi|119580653|gb|EAW60249.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
           recombination (yeast) [Homo sapiens]
 gi|158258671|dbj|BAF85306.1| unnamed protein product [Homo sapiens]
 gi|306921535|dbj|BAJ17847.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
           recombination [synthetic construct]
          Length = 340

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 88/242 (36%), Gaps = 33/242 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +++GS   D  LG GG     I E +G   +GKT L+      +Q        GG   F+
Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFI 159

Query: 102 DAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-----VDI 148
           D E+       R +           L N+L ++  T E  +E+ D +            +
Sbjct: 160 DTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKL 219

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           ++IDS+ AL          G      + + ++Q L +L          +   NQM    G
Sbjct: 220 LIIDSIMALFR----VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPG 275

Query: 209 VMFG---SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
                   P+   GG+ L   S+ R+ +R      R+  I D   +  N+    +    +
Sbjct: 276 ATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGI 335

Query: 260 AS 261
             
Sbjct: 336 GD 337


>gi|297475398|ref|XP_002687971.1| PREDICTED: DMC1 dosage suppressor of mck1 homolog [Bos taurus]
 gi|296487030|gb|DAA29143.1| DMC1 dosage suppressor of mck1 homolog [Bos taurus]
          Length = 340

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 89/242 (36%), Gaps = 33/242 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +++GS   D  LG GG     I E +G   +GKT L+      +Q       +GG   F+
Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYSGGXIIFI 159

Query: 102 DAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-----VDI 148
           D E+       R +           L N+L ++  T E  +E+ D +            +
Sbjct: 160 DTENTFRPDRLRDIADRFNVDHNAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKL 219

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           ++IDS+ AL          G      + + ++Q L +L          +   NQM    G
Sbjct: 220 LIIDSIMALFR----VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPG 275

Query: 209 VMFG---SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
                   P+   GG+ L   S+ R+ +R      R+  I D   +  N+    +    +
Sbjct: 276 ATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGI 335

Query: 260 AS 261
             
Sbjct: 336 GD 337


>gi|73969087|ref|XP_860310.1| PREDICTED: similar to Meiotic recombination protein DMC1/LIM15
           homolog isoform 2 [Canis familiaris]
          Length = 316

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 89/242 (36%), Gaps = 33/242 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +++GS   D  LG GG     I E +G   +GKT L+      +Q       +GG   F+
Sbjct: 77  ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYSGGKIIFI 135

Query: 102 DAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-----VDI 148
           D E+       R +           L N+L ++  T E  +E+ D +            +
Sbjct: 136 DTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKL 195

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           ++IDS+ AL          G      + + ++Q L +L          +   NQM    G
Sbjct: 196 LIIDSIMALFR----VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPG 251

Query: 209 VMFG---SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
                   P+   GG+ L   S+ R+ +R      R+  I D   +  N+    +    +
Sbjct: 252 ATMTFQADPKKPIGGHILAHASTTRVSLRKGRGELRIAKIYDSPEMPENEATFAITAGGI 311

Query: 260 AS 261
             
Sbjct: 312 GD 313


>gi|288869613|ref|ZP_05975231.2| DNA repair and recombination protein RadA [Methanobrevibacter
           smithii DSM 2374]
 gi|288860598|gb|EFC92896.1| DNA repair and recombination protein RadA [Methanobrevibacter
           smithii DSM 2374]
          Length = 314

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 96/246 (39%), Gaps = 29/246 (11%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
                +  +S GS G +  +G GG     I E++G   SGK+ ++       Q       
Sbjct: 74  ERRRDVGHISVGSEGFNDLIG-GGIETQSITEVFGEFGSGKSQISHELAVTVQLPPEKGG 132

Query: 94  TGGTCAFVDAEHALDSIYARKLGV--------DLKNLLISQPDTGEQAL----EITDMLV 141
             G C F+D E+        ++           L+ + +++       +    +I +++ 
Sbjct: 133 LDGECVFIDTENTFRPERIEQIANGFELDIDEVLQKIHVARAFNSSHQILMAEKINELIQ 192

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           +   + ++++DS+ A   RAE  G        ++ + ++Q L  L    +     +   N
Sbjct: 193 QGNNIKLVIVDSLMAHF-RAEYVGR---ESLAVRQQKLNQHLHALQQIANTYNVAVFITN 248

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDI------RRVGSIKDKDSITGNQTRVKVV 255
           Q++ K    FGSP    GG+ L   S+ R+ +      +R+  + D   +   +   K+ 
Sbjct: 249 QVQAKPDSFFGSPTKAIGGHVLGHASTYRIWLKKGLAGKRIARLVDSPHLPEGECVFKIK 308

Query: 256 KNKMAS 261
              +  
Sbjct: 309 TEGIVD 314


>gi|326911974|ref|XP_003202330.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog
           [Meleagris gallopavo]
          Length = 342

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 89/242 (36%), Gaps = 33/242 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +++GS   D  LG GG     I E +G   +GKT L+      +Q       TGG   F+
Sbjct: 103 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGPNGYTGGKIIFI 161

Query: 102 DAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-----VDI 148
           D E+       R +           L N+L ++  T E  +E+ D +            +
Sbjct: 162 DTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKL 221

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           ++IDS+ AL          G      + + ++Q L +L          +   NQM    G
Sbjct: 222 LIIDSIMALFR----VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPG 277

Query: 209 VMFG---SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
                   P+   GG+ L   S+ R+ +R      R+  I D   +  N+    +    +
Sbjct: 278 ATMTFQADPKKPVGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITPGGI 337

Query: 260 AS 261
             
Sbjct: 338 GD 339


>gi|21805949|gb|AAM76793.1| Dmc1 protein type A [Oryza sativa Indica Group]
          Length = 344

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 100/272 (36%), Gaps = 35/272 (12%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K  EAA   + + +  G+           + +  +++GS  LD  LG GG     I E 
Sbjct: 78  DKICEAAEKLLSQGFITGS-----DLLIKRKSVVRITTGSQALDKLLG-GGIETLCITEA 131

Query: 73  YGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYA----RKLGVD---- 118
           +G   SGKT LA      +Q         G  A++D E             + G+D    
Sbjct: 132 FGEFRSGKTQLAHTLCVSAQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAV 191

Query: 119 LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           L N++ ++  T E    +       +      ++++DSV AL          G      +
Sbjct: 192 LDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAKR 247

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE--TTTGGNALKFYSSVRLDI 233
            + ++Q L +LT         +   NQ+    G      +     GG+ L   +++RL +
Sbjct: 248 QQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDLKKPAGGHVLAHAATIRLML 307

Query: 234 R------RVGSIKDKDSITGNQTRVKVVKNKM 259
           R      RV  I D  ++   +   +V    +
Sbjct: 308 RKGKGEQRVCKIFDAPNLPEGEAVFQVTSGGI 339


>gi|291389878|ref|XP_002711438.1| PREDICTED: DMC1 dosage suppressor of mck1 homolog [Oryctolagus
           cuniculus]
          Length = 340

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 88/242 (36%), Gaps = 33/242 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +++GS   D  LG GG     I E +G   +GKT L+      +Q        GG   F+
Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGASGYPGGKIIFI 159

Query: 102 DAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-----VDI 148
           D E+       R +           L N+L ++  T E  +E+ D +            +
Sbjct: 160 DTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKL 219

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           ++IDS+ AL          G      + + ++Q L +L          +   NQM    G
Sbjct: 220 LIIDSIMALFR----VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPG 275

Query: 209 VMFG---SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
                   P+   GG+ L   S+ R+ +R      R+  I D   +  N+    +    +
Sbjct: 276 ATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGI 335

Query: 260 AS 261
             
Sbjct: 336 GD 337


>gi|15026989|emb|CAC44769.1| RecA protein [Lactobacillus sp. NIRD-P2]
 gi|15027137|emb|CAC44773.1| RecA protein [Lactobacillus paraplantarum]
          Length = 107

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 72/107 (67%), Positives = 92/107 (85%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD IYA  LGV++ +LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEIEG+
Sbjct: 1   LDPIYAEHLGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDILVVDSVAALVPRAEIEGE 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           MG++  G+QARLMSQALRKL+ +++++K I +FINQ+R K+GVMFG+
Sbjct: 61  MGDAHVGLQARLMSQALRKLSGTLNKTKTIALFINQIREKVGVMFGN 107


>gi|15027133|emb|CAC44776.1| RecA protein [Lactobacillus pentosus]
 gi|15027135|emb|CAC44779.1| RecA protein [Lactobacillus plantarum]
 gi|15027185|emb|CAC44777.1| RecA protein [Lactobacillus pentosus]
 gi|15027187|emb|CAC44780.1| RecA protein [Lactobacillus plantarum]
          Length = 107

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 71/107 (66%), Positives = 92/107 (85%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YA  LGV++ +LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEIEG+
Sbjct: 1   LDPVYAEHLGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDILVVDSVAALVPRAEIEGE 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           MG++  G+QARLMSQALRKL+ +++++K I +FINQ+R K+GVMFG+
Sbjct: 61  MGDAHVGLQARLMSQALRKLSGTLNKTKTIALFINQIREKVGVMFGN 107


>gi|21805940|gb|AAM76791.1| Dmc1 protein type A [Oryza sativa Japonica Group]
          Length = 344

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 100/272 (36%), Gaps = 35/272 (12%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K  EAA   + + +  G+           + +  +++GS  LD  LG GG     I E 
Sbjct: 78  DKICEAAEKLLSQGFITGS-----DLLIKRKSVVRITTGSQALDELLG-GGIETLCITEA 131

Query: 73  YGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYA----RKLGVD---- 118
           +G   SGKT LA      +Q         G  A++D E             + G+D    
Sbjct: 132 FGEFRSGKTQLAHTLCVSAQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAV 191

Query: 119 LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           L N++ ++  T E    +       +      ++++DSV AL          G      +
Sbjct: 192 LDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAER 247

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE--TTTGGNALKFYSSVRLDI 233
            + ++Q L +LT         +   NQ+    G      +     GG+ L   +++RL +
Sbjct: 248 QQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDLKKPAGGHVLAHAATIRLML 307

Query: 234 R------RVGSIKDKDSITGNQTRVKVVKNKM 259
           R      RV  I D  ++   +   +V    +
Sbjct: 308 RKGKGEQRVCKIFDAPNLPEGEAVFQVTSGGI 339


>gi|294471048|gb|ADE80785.1| recombinase A [Lactococcus lactis subsp. hordniae]
          Length = 108

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 63/108 (58%), Positives = 87/108 (80%)

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AF+DA +ALD  YA+ LGV++  LL+SQPD GEQ L+I + L+ SGAVD++VIDSVAAL 
Sbjct: 1   AFIDAXNALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAALV 60

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           P+AEI+G++G+S  G+QAR+MSQA+RKL   I+++K   +FINQ+R K
Sbjct: 61  PKAEIDGEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREK 108


>gi|221055874|ref|XP_002259075.1| recombinase rad51 [Plasmodium knowlesi strain H]
 gi|193809146|emb|CAQ39848.1| recombinase rad51, putative [Plasmodium knowlesi strain H]
          Length = 350

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 84/251 (33%), Gaps = 31/251 (12%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-- 94
                 + +   ++GS  LD  L  GG   G I E++G   +GK+ L        Q    
Sbjct: 101 DYHDARQNLIKFTTGSKQLDSLL-KGGIETGGITELFGEFRTGKSQLCHTLAITCQLPIE 159

Query: 95  ----GGTCAFVDAEHALDSIYARKLGVDLKNLLISQ-----------PDTGEQALEITDM 139
                G C ++D E          +                       D   + L     
Sbjct: 160 QSGGEGKCLWIDTEGTFRPERIVAIAKRYGLHPTDCLNNIAYAKAYNCDHQTELLIDASA 219

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           ++      ++++DS  AL  R+E    +G      +   + + LR L          ++ 
Sbjct: 220 MMADARFALLIVDSATALY-RSEY---IGRGELANRQSHLCRFLRGLQRIADIYGVAVII 275

Query: 200 INQMRMKIGVM---FGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQT 250
            NQ+  K+  M    G+ +   GGN +   S  RL +R      R+  I D   +   + 
Sbjct: 276 TNQVVAKVDAMNVFGGNDKIPIGGNIIAHASQTRLYLRKSRGESRICKIYDSPVLPEAEA 335

Query: 251 RVKVVKNKMAS 261
              + +  +A 
Sbjct: 336 VFAITEGGIAD 346


>gi|170035198|ref|XP_001845458.1| DNA repair protein RAD51 [Culex quinquefasciatus]
 gi|167877010|gb|EDS40393.1| DNA repair protein RAD51 [Culex quinquefasciatus]
          Length = 349

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 90/246 (36%), Gaps = 31/246 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              I  +++GS  LD  LG GG   G I E++G   +GKT L        Q         
Sbjct: 106 RSEIIQLTTGSKELDKLLG-GGIETGSITELFGEFRTGKTQLCHTLAVTCQLPVSQNGGE 164

Query: 96  GTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQALEI---TDMLVRSG 144
           G C ++D E          +           L N+  ++    +  +++      ++   
Sbjct: 165 GKCLYIDTEGTFRPERLLAVADRYKLVGSDVLDNVAYARAYNSDHQMQLLVQASAMMAES 224

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  AL  R +  G    +   +    + + LR L          ++  NQ+ 
Sbjct: 225 RYALLIVDSATALF-RTDYAGRGELNARQVN---LGKFLRMLLRLADEFGVAVIITNQVV 280

Query: 205 MKIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
            ++    +    P+   GG+ +   S+ RL +R      RV  I D   +  ++    + 
Sbjct: 281 AQVDASAMFTPDPKKPIGGHIIAHASTTRLYLRKGRGETRVCKIYDSPCLPESEAMYAIN 340

Query: 256 KNKMAS 261
            + +  
Sbjct: 341 ADGIGD 346


>gi|115487302|ref|NP_001066138.1| Os12g0143800 [Oryza sativa Japonica Group]
 gi|14669854|dbj|BAB62026.1| RiLIM15A [Oryza sativa]
 gi|18700483|dbj|BAB85213.1| DMC1 [Oryza sativa Japonica Group]
 gi|113648645|dbj|BAF29157.1| Os12g0143800 [Oryza sativa Japonica Group]
 gi|215766778|dbj|BAG99006.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 344

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 100/272 (36%), Gaps = 35/272 (12%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K  EAA   + + +  G+           + +  +++GS  LD  LG GG     I E 
Sbjct: 78  DKICEAAEKLLSQGFITGS-----DLLIKRKSVVRITTGSQALDKLLG-GGIETLCITEA 131

Query: 73  YGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYA----RKLGVD---- 118
           +G   SGKT LA      +Q         G  A++D E             + G+D    
Sbjct: 132 FGEFRSGKTQLAHTLCVSAQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAV 191

Query: 119 LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           L N++ ++  T E    +       +      ++++DSV AL          G      +
Sbjct: 192 LDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAER 247

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE--TTTGGNALKFYSSVRLDI 233
            + ++Q L +LT         +   NQ+    G      +     GG+ L   +++RL +
Sbjct: 248 QQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDLKKPAGGHVLAHAATIRLML 307

Query: 234 R------RVGSIKDKDSITGNQTRVKVVKNKM 259
           R      RV  I D  ++   +   +V    +
Sbjct: 308 RKGKGEQRVCKIFDAPNLPEGEAVFQVTSGGI 339


>gi|325120006|emb|CBZ55559.1| putative meiotic recombination protein DMC1-like protein [Neospora
           caninum Liverpool]
          Length = 349

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 90/243 (37%), Gaps = 31/243 (12%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG------GTC 98
           +  +++GS  LD  LG GGF    I E++G    GKT +       +Q         G  
Sbjct: 109 VIKITTGSDQLDQLLG-GGFETMSITELFGENRCGKTQICHTVCVTAQLPRDMKGGCGKV 167

Query: 99  AFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQA---LEITDMLVRSGAVD 147
            ++D E        + +           L N++ ++  T E     L I    +      
Sbjct: 168 CYIDTEGTFRPEKIQGIAERFGLDGDGVLDNIMYARAFTTEHMYQLLTIAAAKMCEERFS 227

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++++DS+ AL  R +  G    +    +   M   + KL     +    ++  NQ+    
Sbjct: 228 VLIVDSIIALF-RVDFSGRGELADRQQKLNKMLSVMMKL---AEQYNLAVLLTNQVMSDP 283

Query: 208 G---VMFGSPETTTGGNALKFYSSVRLDIRRVG------SIKDKDSITGNQTRVKVVKNK 258
           G       +P    GG+ L   S+ RL +R+         + D  ++  ++  +++    
Sbjct: 284 GGGLTFTANPTKPVGGHVLGHASTTRLSMRKGKGDQRIVKVYDAPNLPESECIIQLSSKG 343

Query: 259 MAS 261
           +  
Sbjct: 344 VID 346


>gi|311255074|ref|XP_003126070.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog [Sus
           scrofa]
          Length = 340

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 89/242 (36%), Gaps = 33/242 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +++GS   D  LG GG     I E +G   +GKT L+      +Q       +GG   F+
Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYSGGKIIFI 159

Query: 102 DAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-----VDI 148
           D E+       R +           L N+L ++  T E  +E+ D +            +
Sbjct: 160 DTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKL 219

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           ++IDS+ AL          G      + + ++Q L +L          +   NQM    G
Sbjct: 220 LIIDSIMALFR----VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPG 275

Query: 209 VMFG---SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
                   P+   GG+ L   S+ R+ +R      R+  I D   +  N+    +    +
Sbjct: 276 ATMTFQADPKKPVGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGI 335

Query: 260 AS 261
             
Sbjct: 336 GD 337


>gi|301757528|ref|XP_002914594.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog
           [Ailuropoda melanoleuca]
          Length = 340

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 89/242 (36%), Gaps = 33/242 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +++GS   D  LG GG     I E +G   +GKT L+      +Q       +GG   F+
Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYSGGKIIFI 159

Query: 102 DAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-----VDI 148
           D E+       R +           L N+L ++  T E  +E+ D +            +
Sbjct: 160 DTENTFRPDRLRDIADRFNVDHNAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKL 219

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           ++IDS+ AL          G      + + ++Q L +L          +   NQM    G
Sbjct: 220 LIIDSIMALFR----VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPG 275

Query: 209 VMFG---SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
                   P+   GG+ L   S+ R+ +R      R+  I D   +  N+    +    +
Sbjct: 276 ATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGI 335

Query: 260 AS 261
             
Sbjct: 336 GD 337


>gi|300797730|ref|NP_001178267.1| meiotic recombination protein DMC1/LIM15 homolog [Bos taurus]
          Length = 340

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 89/242 (36%), Gaps = 33/242 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +++GS   D  LG GG     I E +G   +GKT L+      +Q       +GG   F+
Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYSGGKIIFI 159

Query: 102 DAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-----VDI 148
           D E+       R +           L N+L ++  T E  +E+ D +            +
Sbjct: 160 DTENTFRPDRLRDIADRFNVDHNAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKL 219

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           ++IDS+ AL          G      + + ++Q L +L          +   NQM    G
Sbjct: 220 LIIDSIMALFR----VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPG 275

Query: 209 VMFG---SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
                   P+   GG+ L   S+ R+ +R      R+  I D   +  N+    +    +
Sbjct: 276 ATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGI 335

Query: 260 AS 261
             
Sbjct: 336 GD 337


>gi|156098342|ref|XP_001615203.1| DNA repair protein RAD51 [Plasmodium vivax SaI-1]
 gi|148804077|gb|EDL45476.1| DNA repair protein RAD51, putative [Plasmodium vivax]
          Length = 350

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 82/251 (32%), Gaps = 31/251 (12%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-- 94
                 + +   ++GS  LD  L  GG   G I E++G   +GK+ L        Q    
Sbjct: 101 DYHDARQNLIKFTTGSKQLDSLL-KGGIETGGITELFGEFRTGKSQLCHTLAITCQLPIE 159

Query: 95  ----GGTCAFVDAEHALDSIYARKLGVDLKNLLISQ-----------PDTGEQALEITDM 139
                G C ++D E          +                       D   + L     
Sbjct: 160 QSGGEGKCLWIDTEGTFRPERIVAIAKRYGLHPTDCLNNIAYAKAYNCDHQTELLIDASA 219

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           ++      ++++DS  AL  R+E    +G      +   + + LR L          ++ 
Sbjct: 220 MMADARFALLIVDSATALY-RSEY---IGRGELASRQSHLCRFLRGLQRIADIYGVAVII 275

Query: 200 INQMRMKIGVMFGS---PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQT 250
            NQ+  K+  M       +   GGN +   S  RL +R      R+  I D   +   + 
Sbjct: 276 TNQVVAKVDAMSMFGGHEKIPIGGNIIAHASQTRLYLRKGRGESRICKIYDSPVLPEGEA 335

Query: 251 RVKVVKNKMAS 261
              + +  +A 
Sbjct: 336 VFAITEGGIAD 346


>gi|255552035|ref|XP_002517062.1| meiotic recombination protein dmc1, putative [Ricinus communis]
 gi|223543697|gb|EEF45225.1| meiotic recombination protein dmc1, putative [Ricinus communis]
          Length = 353

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 59/269 (21%), Positives = 95/269 (35%), Gaps = 38/269 (14%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K  EAA   +   Y  G+           + +  +++GS  LD  LG GG     I E 
Sbjct: 78  DKICEAAEKIVNFGYITGS-----DALLRRKQVVRITTGSQALDELLG-GGIETLCITEA 131

Query: 73  YGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYA----RKLGVD---- 118
           +G   SGKT LA      +Q         G  A++D E             + G+D    
Sbjct: 132 FGEFRSGKTQLAHTLCVSTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAV 191

Query: 119 LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           L N++ ++  T E    +       +      ++++DSV AL          G      +
Sbjct: 192 LDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFR----VDFTGRGELAER 247

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKI--GVMFGSPETTTGGNALKFYSSVRLDI 233
            + ++Q L +LT         +   NQ+      GV    P+   GG+ L   +++RL  
Sbjct: 248 QQKLAQMLSRLTKIAEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAATIRLMF 307

Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           R+           G Q   KV        
Sbjct: 308 RKGK---------GEQRVCKVFDAPNLPE 327


>gi|209879790|ref|XP_002141335.1| meiotic recombination protein DMC1-like protein [Cryptosporidium
           muris RN66]
 gi|209556941|gb|EEA06986.1| meiotic recombination protein DMC1-like protein, putative
           [Cryptosporidium muris RN66]
          Length = 342

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 99/278 (35%), Gaps = 39/278 (14%)

Query: 13  SKALEAA--LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
            K +EAA  L Q+   +  G         +  + I  +++GS   D  L +GGF    I 
Sbjct: 74  EKIVEAAQKLEQV-SSFQTGT-----EVLAKRQNILRITTGSEQFDKML-LGGFESMCIT 126

Query: 71  EIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKLGVD------ 118
           EI+G    GKT +       +Q         G   F+D E         K+         
Sbjct: 127 EIFGENRCGKTQICHTLCVTAQLPTEMSGANGKVCFIDTEGTFRPERIAKISERFGLQGD 186

Query: 119 --LKNLLISQPDTGEQALEITDMLVRSGAVDII---VIDSVAALTPRAEIEGDMGESLPG 173
             L N+L ++  T E   ++          +     ++DS+ AL  R E  G        
Sbjct: 187 VTLDNILYARAYTHEHLNQLISAAAGKMIEERFALLIVDSIIALF-RTEFSGRGE---LA 242

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKI---GVMFGSPETTTGGNALKFYSSVR 230
            + +++++ L KL     +    +V  N +            +     GG+ +   S VR
Sbjct: 243 ERQQILNKTLSKLNKLADQFNIAVVMTNHVMADPAGGMTFMPNIAKPVGGHIIGHASHVR 302

Query: 231 LDIR------RVGSIKDKDSITGNQTRVKVVKNKMASP 262
           L +R      RV  +     +  ++  +++    +  P
Sbjct: 303 LSLRKGKGEQRVCKVYGSPHLPESECVIQLSDGGIIDP 340


>gi|326536428|ref|YP_004300858.1| UvsX RecA-like recombination protein [Aeromonas phage 65]
 gi|40795454|gb|AAR90919.1| UvsX RecA-like recombination protein [Aeromonas phage 65]
          Length = 368

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 98/271 (36%), Gaps = 16/271 (5%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTI--A 89
           + ++   F   + + +    +++ +     GG   G +  I GP    K+ L+L  +   
Sbjct: 28  MLAESIFFNEKDTIRTRVPIINLMMSGRLDGGITPG-LTCIAGPSKHFKSNLSLVMVSAY 86

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD----MLVRSGA 145
             +     C F D E      Y    GVD+  ++   P    + L+         +  G 
Sbjct: 87  LRKYPKAVCLFFDNEFGSTPDYFTSQGVDISRVVH-CPFIDVEELKFDIVKKLESITRGD 145

Query: 146 VDIIVIDSVAALTPRAEIEGDMGE--SLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             II IDS+  +  + E++    E  +    +A+ +    R +T  ++      + +N  
Sbjct: 146 KVIIYIDSIGNVASKKELQDAKDEKSAQDMTRAKQIKSLFRMVTPYLTVLDIPCIAVNHT 205

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
                 MF     + G   +    +V +        KD   + G    +   K++     
Sbjct: 206 YE-TQEMFSKTVMSGGTGPMYSADTVII--LGKQQDKDGKELLGYNFVMNAEKSRAIKEK 262

Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDK 294
            +++  + +  GI+ +  L+ +  +   V K
Sbjct: 263 SKLDLMVSFEGGINTYSGLLKIAQELGFVTK 293


>gi|82539154|ref|XP_723988.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23478474|gb|EAA15553.1| Rad51 homolog [Plasmodium yoelii yoelii]
          Length = 352

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 80/251 (31%), Gaps = 31/251 (12%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-- 94
                 + +   ++GS  LD  L  GG   G I E++G   +GK+ L        Q    
Sbjct: 103 DYHDARQNLIKFTTGSKQLDALL-KGGIETGGITELFGEFRTGKSQLCHTLAITCQLPIE 161

Query: 95  ----GGTCAFVDAEHALDSIYARKLGVDLKNLLISQ-----------PDTGEQALEITDM 139
                G C ++D E          +                       D   + L     
Sbjct: 162 QSGGEGKCLWIDTEGTFRPERIVAIAKRYGLHPTDCLNNIAYAKAYNCDHQTELLIDASA 221

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           ++      ++++DS  AL  R+E  G    +          + LR L          ++ 
Sbjct: 222 MMADTRFALLIVDSATALY-RSEYTGRGELANRQSHLC---RFLRGLQRIADIYGVAVII 277

Query: 200 INQMRMKIGVMFGS---PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQT 250
            NQ+  K+  M       +   GGN +   S  RL +R      R+  I D   +   + 
Sbjct: 278 TNQVVAKVDAMSMFGGHEKIPIGGNIIAHASQTRLYLRKGRGESRICKIYDSPVLPEGEA 337

Query: 251 RVKVVKNKMAS 261
              + +  +A 
Sbjct: 338 VFAITEGGIAD 348


>gi|166714617|gb|ABY88036.1| RecA [Stenotrophomonas sp. ICB141]
          Length = 97

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 66/97 (68%), Positives = 78/97 (80%), Gaps = 2/97 (2%)

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           RKLT +I RS  ++VFINQ+RMKIGVM    SPE TTGGNALKFY+SVRLDIRR+G+I  
Sbjct: 1   RKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAINK 60

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISF 278
            D I GNQT++KVVKNK+A PFKQV  +I+YGE IS 
Sbjct: 61  GDEIIGNQTKIKVVKNKLAPPFKQVITEILYGESISR 97


>gi|119177699|ref|XP_001240596.1| hypothetical protein CIMG_07759 [Coccidioides immitis RS]
          Length = 339

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 57/259 (22%), Positives = 96/259 (37%), Gaps = 34/259 (13%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG Q    + +  +S+GS   D  L   GF    I E+YG    GKT L+      +Q
Sbjct: 87  MELGHQ---RKRVVRISTGSKQFDAILNGSGFQSMSISEVYGEFRCGKTQLSHTMSVVAQ 143

Query: 93  ------KTGGTCAFVDAEHALDSIYA----RKLGVD----LKNLLISQPDTGEQALEITD 138
                    G  A++D E             + GVD    L+N+  ++    E  LE+ +
Sbjct: 144 LPRSMGGAEGKVAYIDTEGTFRPERVGQIAERFGVDPDSSLENIAYARALNSEHQLELLN 203

Query: 139 MLVRSG---AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
            L +        +++IDS+     R +  G         + + ++Q L KL         
Sbjct: 204 TLSKEFAGGEYRLLIIDSIMNCF-RVDYCGRGE---LADRQQKLNQFLMKLAHMAEEFNV 259

Query: 196 ILVFINQMRMKIGVM----FGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
            ++  NQ++   G              GG+ L   S+ R+ +R      RV  I+D    
Sbjct: 260 CVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTRVFLRKGRGEERVAKIQDSPDC 319

Query: 246 TGNQTRVKVVKNKMASPFK 264
              +    +    +  P K
Sbjct: 320 PEREATYIITNGGINDPEK 338


>gi|237843305|ref|XP_002370950.1| meiotic recombination protein DMC1-like protein, putative
           [Toxoplasma gondii ME49]
 gi|211968614|gb|EEB03810.1| meiotic recombination protein DMC1-like protein, putative
           [Toxoplasma gondii ME49]
 gi|221481850|gb|EEE20220.1| meiotic recombination protein dmc1, putative [Toxoplasma gondii
           GT1]
 gi|221502349|gb|EEE28082.1| meiotic recombination protein dmc1, putative [Toxoplasma gondii
           VEG]
          Length = 349

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 90/243 (37%), Gaps = 31/243 (12%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG------GTC 98
           +  +++GS  LD  LG GGF    I E++G    GKT L       +Q         G  
Sbjct: 109 VIKITTGSDQLDQLLG-GGFETMSITELFGENRCGKTQLCHTVCVTAQLPRDMKGGCGKV 167

Query: 99  AFVDAEHALDSIYARKLGVD--------LKNLLISQPDT---GEQALEITDMLVRSGAVD 147
            ++D E        + +           L N++ ++  T     Q L +    +      
Sbjct: 168 CYIDTEGTFRPEKIQGIAERFGLDGDGVLDNIMYARAFTTEHMHQLLTLAAAKMCEERFS 227

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++++DS+ AL  R +  G    +    +   M   + KL     +    ++  NQ+    
Sbjct: 228 VLIVDSIIALF-RVDFSGRGELADRQQKLNRMLSIMMKL---AEQYNLAVMLTNQVMSDP 283

Query: 208 G---VMFGSPETTTGGNALKFYSSVRLDIRRVG------SIKDKDSITGNQTRVKVVKNK 258
           G       +P    GG+ L   S+ RL +R+         + D  ++  ++  +++    
Sbjct: 284 GGGLTFTANPTKPVGGHVLGHASTTRLSMRKGKGDQRIVKVYDAPNLPESECIIQLSSRG 343

Query: 259 MAS 261
           +  
Sbjct: 344 IID 346


>gi|13925871|gb|AAK49450.1| RecA [Bacteroides ovatus]
          Length = 101

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 68/101 (67%), Positives = 85/101 (84%)

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           DAEHA D  YA KLGV++ +L ISQPD GEQALEI + L+RS A+DIIVIDSVAALTP+A
Sbjct: 1   DAEHAFDRFYASKLGVNIDDLFISQPDNGEQALEIAEQLIRSSAIDIIVIDSVAALTPKA 60

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           EIEGDMG++  G+ ARLMSQALRKLT+++S+++   +FINQ
Sbjct: 61  EIEGDMGDNKVGLHARLMSQALRKLTAAVSKTRTTCIFINQ 101


>gi|327401969|ref|YP_004342808.1| DNA repair and recombination protein radB [Archaeoglobus veneficus
           SNP6]
 gi|327317477|gb|AEA48093.1| DNA repair and recombination protein radB [Archaeoglobus veneficus
           SNP6]
          Length = 221

 Score = 87.6 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 91/226 (40%), Gaps = 20/226 (8%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            + SGS  +D  LG GGF  G I +IYG  ++GKT+L L     +    G  A++D E  
Sbjct: 5   RLPSGSRCIDSLLG-GGFETGTITQIYGASATGKTSLCLMLAYNTALRFGKVAYIDTEGL 63

Query: 107 LDSIYARKL--GVDLKNLLISQPDTGEQA---LEITDMLVRSGAVDIIVIDSVAALTPRA 161
                 +    G  LKN+ I      +Q    ++    L R   V ++++DS  AL  R+
Sbjct: 64  SGERVKQIFEKGEVLKNVYIYDVFDFKQQSVAIKELAKLCRKEEVRLVIVDSFTALY-RS 122

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
           E+E    E    M+  L+ Q    L     +    +V  NQM   +       +   GG 
Sbjct: 123 ELED---ERAVQMKRELVHQLTF-LLGLARKYGLAVVITNQMFTDVKT---GEDKPLGGP 175

Query: 222 ALKFYSSVRLDI------RRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           ++   S V L +      R+   +K +    G     ++    +  
Sbjct: 176 SIDHLSKVILALERSNSERKATLVKHRSKPEGESCTFRITDRGLEP 221


>gi|68071341|ref|XP_677584.1| Rad51 [Plasmodium berghei strain ANKA]
 gi|56497754|emb|CAH95058.1| Rad51 homolog, putative [Plasmodium berghei]
          Length = 349

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 80/251 (31%), Gaps = 31/251 (12%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-- 94
                 + +   ++GS  LD  L  GG   G I E++G   +GK+ L        Q    
Sbjct: 100 DYHDARQNLIKFTTGSKQLDALL-KGGIETGGITELFGEFRTGKSQLCHTLAITCQLPIE 158

Query: 95  ----GGTCAFVDAEHALDSIYARKLGVDLKNLLISQ-----------PDTGEQALEITDM 139
                G C ++D E          +                       D   + L     
Sbjct: 159 QSGGEGKCLWIDTEGTFRPERIVAIAKRYGLHPTDCLNNIAYAKAYNCDHQTELLIDASA 218

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           ++      ++++DS  AL  R+E  G    +          + LR L          ++ 
Sbjct: 219 MMADTRFALLIVDSATALY-RSEYTGRGELANRQSHLC---RFLRGLQRIADIYGVAVII 274

Query: 200 INQMRMKIGVMFGS---PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQT 250
            NQ+  K+  M       +   GGN +   S  RL +R      R+  I D   +   + 
Sbjct: 275 TNQVVAKVDAMSMFGGHEKIPIGGNIIAHASQTRLYLRKGRGESRICKIYDSPVLPEGEA 334

Query: 251 RVKVVKNKMAS 261
              + +  +A 
Sbjct: 335 VFAITEGGIAD 345


>gi|238498922|ref|XP_002380696.1| meiotic recombination protein (Dmc1), putative [Aspergillus flavus
           NRRL3357]
 gi|220693970|gb|EED50315.1| meiotic recombination protein (Dmc1), putative [Aspergillus flavus
           NRRL3357]
          Length = 318

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 95/259 (36%), Gaps = 35/259 (13%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  Q    + +  +S+GS   D  LG GGF    I E++G    GKT L+      +Q
Sbjct: 67  MELSHQ---RKRVVRISTGSKQFDAILG-GGFQSMSISEVFGEFRCGKTQLSHTMSVVAQ 122

Query: 93  ------KTGGTCAFVDAEHALDSIYA----RKLGVDLK----NLLISQPDTGEQALEITD 138
                    G  A++D E             + GVD      N+  ++    E  LE+ +
Sbjct: 123 LPKEMGGADGKVAYIDTEGTFRPERIAQIAERFGVDADSARENIAYARALNSEHQLELLN 182

Query: 139 MLVRSG---AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
            L +        +++IDS+     R +  G         + + ++Q L KL         
Sbjct: 183 TLSKEFTGGEYRLLIIDSIMNCF-RVDYCGR---GELADRQQKLNQFLMKLAHMAEEFNV 238

Query: 196 ILVFINQMRMKIGVM----FGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
            ++  NQ++   G              GG+ L   S+ R+ +R      RV  I+D    
Sbjct: 239 CVLMTNQVQSDPGASALFAGADGRKPVGGHVLAHASTTRVLLRKGRGDERVAKIQDSPDC 298

Query: 246 TGNQTRVKVVKNKMASPFK 264
              +    +    +  P K
Sbjct: 299 PEQEATYVITNGGINDPDK 317


>gi|149743044|ref|XP_001501634.1| PREDICTED: similar to Meiotic recombination protein DMC1/LIM15
           homolog [Equus caballus]
          Length = 340

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 89/242 (36%), Gaps = 33/242 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +++GS   D  LG GG     I E +G   +GKT L+      +Q       +GG   F+
Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYSGGKIIFI 159

Query: 102 DAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-----VDI 148
           D E+       R +           L N+L ++  T E  +E+ D +            +
Sbjct: 160 DTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKL 219

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           ++IDS+ AL          G      + + ++Q L +L          +   NQM    G
Sbjct: 220 LIIDSIMALFR----VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPG 275

Query: 209 VMFG---SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
                   P+   GG+ L   S+ R+ +R      R+  I D   +  N+    +    +
Sbjct: 276 ATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGI 335

Query: 260 AS 261
             
Sbjct: 336 GD 337


>gi|63852080|dbj|BAD98459.1| RecA homolog DMC1 [Anguilla japonica]
 gi|90403222|dbj|BAE92010.1| Dmc1 [Anguilla japonica]
          Length = 339

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 92/251 (36%), Gaps = 33/251 (13%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------ 92
               + +  +++GSL  D  +G GG     I E +G   +GKT L+      +Q      
Sbjct: 91  SERRKQVFHITTGSLEFDKLIG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGEDG 149

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSG 144
            TGG   F+D E+       + +           L N+L ++  T E  +E+ D +    
Sbjct: 150 YTGGKVIFIDTENTFRPDRLKDIADRFSVDQEAVLDNVLYARAYTSEHQMELLDFVAAKF 209

Query: 145 A-----VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
                   +++IDS+ AL          G      + + ++Q L +L          +  
Sbjct: 210 HEEGGVFKLLIIDSIMALFR----VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFV 265

Query: 200 INQMRMKI---GVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQT 250
            NQM             P+   GG+ L   S+ R+ +R      R+  I D   +  N+ 
Sbjct: 266 TNQMTADPGAGMTFQADPKKPIGGHILAHASTTRISLRKGRGEMRIAKIFDSPDMPENEA 325

Query: 251 RVKVVKNKMAS 261
              +    +A 
Sbjct: 326 TFAITAGGIAD 336


>gi|290462499|gb|ADD24297.1| DNA repair protein RAD51 homolog 1 [Lepeophtheirus salmonis]
          Length = 350

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 90/257 (35%), Gaps = 34/257 (13%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTG 95
              I  +++GS  LD  L  GG   G I E++G   +GK+ L        Q         
Sbjct: 107 RSQIIQITTGSKELDKLL-KGGIETGSITELFGEFRTGKSQLCHTLAVTCQLPIDHGGAE 165

Query: 96  GTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQA---LEITDMLVRSG 144
           G C ++D E          +           L N+  ++    +     L     ++   
Sbjct: 166 GKCLYIDTEGTFRPERLLAVAERYNLSGNDVLDNVAYARAYNSDHQSQLLIQASAMMAES 225

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              +I++DS  AL  R +  G    S   M    +++ LR L          +V  NQ+ 
Sbjct: 226 RYALIIVDSSTALY-RTDYSGRGELSTRQMH---LARFLRMLLRLADEFGVGVVITNQVV 281

Query: 205 MKIG---VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
            ++    +    P+   GGN +   S+ RL +R+           G Q   K+  +   +
Sbjct: 282 AQVDGAAMFSADPKKPIGGNIMAHASTTRLYLRKGR---------GEQRICKIYDSPCLA 332

Query: 262 PFKQVEFDIMYGEGISF 278
             + +      G G S 
Sbjct: 333 EGEAIFAITADGIGDSK 349


>gi|126339552|ref|XP_001367929.1| PREDICTED: similar to Chain A, Crystal Structure Of The Human Dmc1
           Protein [Monodelphis domestica]
          Length = 342

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 88/242 (36%), Gaps = 33/242 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           V++GS   D  LG GG     I E +G   +GKT L+      +Q        GG   F+
Sbjct: 103 VTTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGTGGYPGGKIIFI 161

Query: 102 DAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-----VDI 148
           D E+       R +           L N+L ++  T E  +E+ D +            +
Sbjct: 162 DTENTFRPDRLRDIADRFNVDHNAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGVFKL 221

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           ++IDS+ AL          G      + + ++Q L +L          +   NQM    G
Sbjct: 222 LIIDSIMALFR----VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPG 277

Query: 209 VMFG---SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
                   P+   GG+ L   S+ R+ +R      R+  I D   +  N+    +    +
Sbjct: 278 ATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPDMPENEATFAITAGGI 337

Query: 260 AS 261
             
Sbjct: 338 GD 339


>gi|30578221|gb|AAP35107.1|AF486821_1 Rad51 [Entamoeba histolytica]
          Length = 366

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 91/250 (36%), Gaps = 32/250 (12%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------ 92
            ++ +    +++GS  LD  L  GGF  G I E++G   +GKT L        Q      
Sbjct: 118 NNLRKETIRITTGSRELDKLL-CGGFETGSITELFGEFRTGKTQLCHQLCVTCQLGIENG 176

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQA---LEITDMLV 141
            T G   ++D E         ++           L N+ +++    E     L++   L+
Sbjct: 177 GTEGRAIYIDTEGTFRPERLTQIAEKYGLNSEEALNNVAVARAHNTEHQMPLLQMASGLM 236

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
                 +++IDS  AL          G      +   + + LR L          +V  N
Sbjct: 237 AKERYGLLIIDSATALYR----TDYSGRGELASRQMHLVKFLRALQRIADEFSVAVVLTN 292

Query: 202 QMRMKIG----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTR 251
           Q+  ++     +  G  +   GGN +   S+ RL +R      R+  + D   +  ++  
Sbjct: 293 QVVAQVDGQASMFGGDTKKPVGGNIIAHASTTRLYLRKGKGEARICKVYDSPCLPESEAS 352

Query: 252 VKVVKNKMAS 261
             +  N +  
Sbjct: 353 FAITTNGIED 362


>gi|46108550|ref|XP_381333.1| hypothetical protein FG01157.1 [Gibberella zeae PH-1]
          Length = 348

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 91/244 (37%), Gaps = 33/244 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  L  GG   G + E++G   +GK+ +        Q         G C +
Sbjct: 102 SITTGSKNLDTLLA-GGIETGSVTELFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCMY 160

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     +    +           L N+  ++    +  L++      ++      ++
Sbjct: 161 IDTEGTFRPVRLLGVANRFGLSGEEVLDNVAYARAYNSDHQLQLLNQAAAMMCETRFSLL 220

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DS  +L  R +  G    S    +   +++ +R L          +V  NQ+  ++  
Sbjct: 221 IVDSATSLY-RTDFCGRGELS---NRQTHLAKFMRTLQRLADEFGIAVVITNQVVAQVDG 276

Query: 209 ----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               +    P+   GGN +   S+ R+ ++      R+  I D   +  + T   + +  
Sbjct: 277 GPSAMFNPDPKKPIGGNIIAHASTTRISLKKGRAETRIAKIYDSPCLPESDTLFAIGEEG 336

Query: 259 MASP 262
           +  P
Sbjct: 337 IGDP 340


>gi|134079842|emb|CAK40975.1| unnamed protein product [Aspergillus niger]
          Length = 334

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 92/250 (36%), Gaps = 32/250 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTG 95
            + I  +S+GS   D  LG GGF    I E++G    GKT L+      +Q        G
Sbjct: 89  RKRIVRISTGSKQFDSILG-GGFQSMSISEVFGEFRCGKTQLSHTMSVVAQLPKELGGAG 147

Query: 96  GTCAFVDAEHALDSIYA----RKLGVDLK----NLLISQPDTGEQALEITDMLVRSG--- 144
           G  A++D E             + GVD      N+  ++    E  LE+ + L +     
Sbjct: 148 GKVAYIDTEGTFRPERIAQIAERFGVDADAAQENIAYARALNSEHQLELLNTLSKEFAGG 207

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              +++IDS+     R +  G         + + ++Q L KL          ++  NQ++
Sbjct: 208 EYRLLIIDSIMNCF-RVDYCGRGE---LADRQQKLNQFLMKLAHMAEEFNICVLMTNQVQ 263

Query: 205 MKIGVM----FGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKV 254
              G              GG+ L   S+ R+ +R      RV  I+D       +    +
Sbjct: 264 SDPGASALFAGADGRKPVGGHVLAHASATRVLLRKGRGEERVAKIQDSPDCPEREATYVI 323

Query: 255 VKNKMASPFK 264
               +  P K
Sbjct: 324 TNGGINDPDK 333


>gi|326427949|gb|EGD73519.1| rad51 protein [Salpingoeca sp. ATCC 50818]
          Length = 332

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 89/246 (36%), Gaps = 31/246 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTG 95
            + I  +S GS  LD  L  GG   G I E++G   +GKT L        Q         
Sbjct: 89  RQEIVNISCGSKELDTLL-QGGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDQGGAE 147

Query: 96  GTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSG 144
           G C ++D E          +           L N+  ++    +  + +      ++   
Sbjct: 148 GKCLYIDTEGTFRPERLLAVAERYGLSGEDVLDNVAYARAYNSDHQMHLLQQASAMMAES 207

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++V+DS  AL  R +  G    S   M    ++Q LR L          +V  NQ+ 
Sbjct: 208 RYALMVVDSATALF-RTDYSGRGELSARQMA---LAQFLRTLMRLADEFGIAVVITNQVV 263

Query: 205 MKIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
            ++    +    P+   GGN +   S+ RL +R      RV  + D   +  ++    + 
Sbjct: 264 AQVDGAAMFAADPKKPIGGNIMAHASTTRLYLRKGRGETRVCKVYDSPCLPESEAVFAIN 323

Query: 256 KNKMAS 261
            + +  
Sbjct: 324 ADGIGD 329


>gi|225714670|gb|ACO13181.1| DNA repair protein RAD51 homolog 1 [Lepeophtheirus salmonis]
          Length = 350

 Score = 87.2 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 90/257 (35%), Gaps = 34/257 (13%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTG 95
              I  +++GS  LD  L  GG   G I E++G   +GK+ L        Q         
Sbjct: 107 RSQIIQITTGSKELDKLL-KGGIETGSITELFGEFRTGKSQLCHTLAVTCQLPIDHGGAE 165

Query: 96  GTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQA---LEITDMLVRSG 144
           G C ++D E          +           L N+  ++    +     L     ++   
Sbjct: 166 GKCLYIDTEGTFRPERLLAVAERYNLSGNDVLDNVAYARAYNSDHQSQLLIQASAMMAEL 225

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              +I++DS  AL  R +  G    S   M    +++ LR L          +V  NQ+ 
Sbjct: 226 RYALIIVDSSTALY-RTDYSGRGELSTRQMH---LARFLRMLLRLADEFGVGVVITNQVV 281

Query: 205 MKIG---VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
            ++    +    P+   GGN +   S+ RL +R+           G Q   K+  +   +
Sbjct: 282 AQVDGAAMFSADPKKPIGGNIMAHASTTRLYLRKGR---------GEQRICKIYDSPCLA 332

Query: 262 PFKQVEFDIMYGEGISF 278
             + +      G G S 
Sbjct: 333 EGEAIFAITADGIGDSK 349


>gi|211904093|ref|NP_001129988.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
           recombination [Oryzias latipes]
 gi|199652322|gb|ACH91672.1| DMC1 [Oryzias latipes]
          Length = 342

 Score = 87.2 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 60/278 (21%), Positives = 104/278 (37%), Gaps = 40/278 (14%)

Query: 17  EAALSQIQRVYGKGAIMQLG-----SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           EA + +I+   GK  ++ +G        S  + +  +S+GS   D  LG GG     I E
Sbjct: 69  EAKVEKIKEAAGK--VLNVGFQTAFEYSSKRKQVFHISTGSQEFDKLLG-GGVESMAITE 125

Query: 72  IYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKL--------GV 117
            +G   +GKT L+      +Q       +GG   F+D E+       R +        G 
Sbjct: 126 AFGEFRTGKTQLSHTLCVTAQLPGENGYSGGKVIFIDTENTFRPDRLRDIADRFNVDHGA 185

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGA-----VDIIVIDSVAALTPRAEIEGDMGESLP 172
            L N+L ++  T E  +E+ D +            +++IDS+ AL          G    
Sbjct: 186 VLDNVLYARAYTSEHQMELLDFVAAKFHEEGGVFKLLIIDSIMALFR----VDFSGRGEL 241

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKI---GVMFGSPETTTGGNALKFYSSV 229
             + + ++Q L +L          +   NQM             P+   GG+ L   S+ 
Sbjct: 242 AERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGAGMTFQADPKKPIGGHILAHASTT 301

Query: 230 RLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
           R+ +R      R+  I D   +  N+    +    +  
Sbjct: 302 RISLRKGRGEMRIAKIFDSPVMPENEATFAISAGGVTD 339


>gi|242004733|ref|XP_002423233.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212506212|gb|EEB10495.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 341

 Score = 87.2 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 90/251 (35%), Gaps = 33/251 (13%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---- 92
              +  + +  +S+GS  LD  +G GG     I E +G   +GKT ++      +Q    
Sbjct: 91  EVSNKRKQVFKISTGSQELDKLIG-GGIESMAITEAFGEFRTGKTQMSHTLCVTAQLPND 149

Query: 93  --KTGGTCAFVDAEHALDSIYARKLGVDLK--------NLLISQPDTGEQALEITDMLVR 142
              TGG   F+D EH       R +             N+L ++  T E   E+ D +  
Sbjct: 150 TGYTGGKVIFLDTEHTFRPDRLRLIADRFDLSQEEVLGNVLYARAYTSEHQQELLDYVAA 209

Query: 143 SGA-----VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
                     ++V+DS+ AL          G      + + ++Q + +L          +
Sbjct: 210 KFYEEAGIYKLLVVDSIMALFR----VDYSGRGELADRQQKLAQLMSRLQKISEEYNVAV 265

Query: 198 VFINQMRMKIGV---MFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGN 248
              NQM    G        P+   GGN L   S+ RL  R      R+  + D   +  N
Sbjct: 266 FITNQMTADPGATLSFQADPKKPIGGNILAHASTTRLSFRKGRGEIRIAKVYDSPDMPEN 325

Query: 249 QTRVKVVKNKM 259
           +    +    +
Sbjct: 326 EATFAITAGGI 336


>gi|195395050|ref|XP_002056149.1| GJ10382 [Drosophila virilis]
 gi|194142858|gb|EDW59261.1| GJ10382 [Drosophila virilis]
          Length = 351

 Score = 87.2 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 48/263 (18%), Positives = 92/263 (34%), Gaps = 35/263 (13%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----- 94
            +   + ++++GS  LD  LG GG   G I EI+G    GKT +        Q       
Sbjct: 103 QMRSEVVMLTTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQICHTLAVTCQLPISQNG 161

Query: 95  -GGTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQALEITDM---LVR 142
             G   ++D E          +           L N+  ++    +Q  ++  M   ++ 
Sbjct: 162 GEGKALYIDTEGTFRPERLSAIAQRYNMEEADVLDNVACARAHNTDQQTKLVQMAAGMMF 221

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                +I++DS  AL  R+E    +G      +   +   LR L          +V  NQ
Sbjct: 222 ESRYALIIVDSAMALY-RSEY---IGRGELAARQNHLGLFLRMLQRLADEFGVAVVITNQ 277

Query: 203 MRMKIG----VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           +  ++     +     +   GG+ +   S+ RL +R+           G+    K+  + 
Sbjct: 278 VTAQVDGGASMFAADAKKPIGGHIMAHASTTRLYLRKGK---------GDARICKIYDSP 328

Query: 259 MASPFKQVEFDIMYGEGISFFGE 281
                + +   +  G G     +
Sbjct: 329 CLPESEAMFAILPEGIGDVKEND 351


>gi|6753650|ref|NP_034189.1| meiotic recombination protein DMC1/LIM15 homolog [Mus musculus]
 gi|2500100|sp|Q61880|DMC1_MOUSE RecName: Full=Meiotic recombination protein DMC1/LIM15 homolog
 gi|961476|dbj|BAA09590.1| MmLim15 protein [Mus musculus]
 gi|1321647|dbj|BAA10969.1| DMC1 homologue [Mus musculus]
 gi|109732931|gb|AAI16768.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
           recombination (yeast) [Mus musculus]
 gi|111601086|gb|AAI19082.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
           recombination (yeast) [Mus musculus]
 gi|148672696|gb|EDL04643.1| disrupted meiotic cDNA 1 homolog, isoform CRA_a [Mus musculus]
          Length = 340

 Score = 87.2 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 89/242 (36%), Gaps = 33/242 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +++GS   D  LG GG     I E +G   +GKT L+      +Q       +GG   F+
Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGTGGYSGGKIIFI 159

Query: 102 DAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-----VDI 148
           D E+       R +           L N+L ++  T E  +E+ D +            +
Sbjct: 160 DTENTFRPDRLRDIADRFNVDHEAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKL 219

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           ++IDS+ AL          G      + + ++Q L +L          +   NQM    G
Sbjct: 220 LIIDSIMALFR----VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPG 275

Query: 209 VMFG---SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
                   P+   GG+ L   S+ R+ +R      R+  I D   +  N+    +    +
Sbjct: 276 ATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGI 335

Query: 260 AS 261
             
Sbjct: 336 GD 337


>gi|325190521|emb|CCA25020.1| DNA repair protein RAD51 putative [Albugo laibachii Nc14]
          Length = 342

 Score = 86.8 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 84/240 (35%), Gaps = 33/240 (13%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
            + +  +S+GS  LD  L  GGF  G I E++G   +GKT L        Q         
Sbjct: 100 RKDLITLSTGSSALDELL-KGGFETGSITELFGEFRTGKTQLCHQLCVTCQLPVDRGGGE 158

Query: 96  GTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSG 144
           G   F+D E          +           L N+  ++    E  +++      ++   
Sbjct: 159 GKALFIDTEGTFRPQRLVAIAERYGLDGDSVLDNVAFARAYNSEHQMQLLIQASAMMAES 218

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  AL          G      + + +++ LR LT         +V  NQM 
Sbjct: 219 RYALVIVDSATALFR----TDFSGRGELAARQQELAKFLRALTKMADEFGVAVVITNQMT 274

Query: 205 MKIGVMFGSPE--TTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
                   + +     GGN +   S  RL +R+           G    +KVV + +   
Sbjct: 275 ANPDSGMFAKDPLQPIGGNIMAHASCTRLRLRKAR---------GENRVMKVVDSPILPE 325


>gi|73969089|ref|XP_849984.1| PREDICTED: similar to Meiotic recombination protein DMC1/LIM15
           homolog isoform 1 [Canis familiaris]
          Length = 340

 Score = 86.8 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 89/242 (36%), Gaps = 33/242 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +++GS   D  LG GG     I E +G   +GKT L+      +Q       +GG   F+
Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYSGGKIIFI 159

Query: 102 DAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-----VDI 148
           D E+       R +           L N+L ++  T E  +E+ D +            +
Sbjct: 160 DTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKL 219

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           ++IDS+ AL          G      + + ++Q L +L          +   NQM    G
Sbjct: 220 LIIDSIMALFR----VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPG 275

Query: 209 VMFG---SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
                   P+   GG+ L   S+ R+ +R      R+  I D   +  N+    +    +
Sbjct: 276 ATMTFQADPKKPIGGHILAHASTTRVSLRKGRGELRIAKIYDSPEMPENEATFAITAGGI 335

Query: 260 AS 261
             
Sbjct: 336 GD 337


>gi|317155982|ref|XP_001825494.2| meiotic recombination protein DMC1 [Aspergillus oryzae RIB40]
          Length = 337

 Score = 86.8 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 95/259 (36%), Gaps = 35/259 (13%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  Q    + +  +S+GS   D  LG GGF    I E++G    GKT L+      +Q
Sbjct: 86  MELSHQ---RKRVVRISTGSKQFDAILG-GGFQSMSISEVFGEFRCGKTQLSHTMSVVAQ 141

Query: 93  ------KTGGTCAFVDAEHALDSIYA----RKLGVDLK----NLLISQPDTGEQALEITD 138
                    G  A++D E             + GVD      N+  ++    E  LE+ +
Sbjct: 142 LPKEMGGADGKVAYIDTEGTFRPERIAQIAERFGVDADSARENIAYARALNSEHQLELLN 201

Query: 139 MLVRSG---AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
            L +        +++IDS+     R +  G         + + ++Q L KL         
Sbjct: 202 TLSKEFTGGEYRLLIIDSIMNCF-RVDYCGRGE---LADRQQKLNQFLMKLAHMAEEFNV 257

Query: 196 ILVFINQMRMKIGVM----FGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
            ++  NQ++   G              GG+ L   S+ R+ +R      RV  I+D    
Sbjct: 258 CVLMTNQVQSDPGASALFAGADGRKPVGGHVLAHASTTRVLLRKGRGDERVAKIQDSPDC 317

Query: 246 TGNQTRVKVVKNKMASPFK 264
              +    +    +  P K
Sbjct: 318 PEQEATYVITNGGINDPDK 336


>gi|195108597|ref|XP_001998879.1| GI23388 [Drosophila mojavensis]
 gi|193915473|gb|EDW14340.1| GI23388 [Drosophila mojavensis]
          Length = 347

 Score = 86.8 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 90/249 (36%), Gaps = 32/249 (12%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----- 94
            +   + ++++GS  LD  LG GG   G I EI+G    GKT +        Q       
Sbjct: 99  QMRSEVVMLTTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQICHTLAVTCQLPISQNG 157

Query: 95  -GGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDM---LVR 142
             G   ++D E          +           L N+  ++    +Q  ++  M   ++ 
Sbjct: 158 GEGKALYIDTEGTFRPERLSAIAQRYNMDEAAVLDNVACARAHNTDQQTQLVQMAAGMMF 217

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                +I++DS  AL  R+E    +G      +   +   LR L          +V  NQ
Sbjct: 218 ESRYALIIVDSAMALY-RSEY---IGRGELAARQNHLGLFLRMLQRLADEFGVAVVITNQ 273

Query: 203 MRMKIG----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRV 252
           +  ++     +     +   GG+ +   S+ RL +R      R+  I D   +  ++   
Sbjct: 274 VTAQVDGGASMFVADAKKPIGGHIMAHASTTRLYLRKGKGDTRICKIYDSPCLPESEAMF 333

Query: 253 KVVKNKMAS 261
            ++   +  
Sbjct: 334 AILPEGIGD 342


>gi|196049702|pdb|2ZJB|A Chain A, Crystal Structure Of The Human Dmc1-M200v Polymorphic
           Variant
 gi|196049703|pdb|2ZJB|B Chain B, Crystal Structure Of The Human Dmc1-M200v Polymorphic
           Variant
          Length = 343

 Score = 86.8 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 88/242 (36%), Gaps = 33/242 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +++GS   D  LG GG     I E +G   +GKT L+      +Q        GG   F+
Sbjct: 104 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFI 162

Query: 102 DAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-----VDI 148
           D E+       R +           L N+L ++  T E  +E+ D +            +
Sbjct: 163 DTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQVELLDYVAAKFHEEAGIFKL 222

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           ++IDS+ AL          G      + + ++Q L +L          +   NQM    G
Sbjct: 223 LIIDSIMALFR----VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPG 278

Query: 209 VMFG---SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
                   P+   GG+ L   S+ R+ +R      R+  I D   +  N+    +    +
Sbjct: 279 ATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGI 338

Query: 260 AS 261
             
Sbjct: 339 GD 340


>gi|2500094|sp|Q54428|RECA_SPIME RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|1236436|gb|AAC44644.1| RecA [Spiroplasma melliferum]
          Length = 77

 Score = 86.8 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/79 (45%), Positives = 56/79 (70%), Gaps = 6/79 (7%)

Query: 1  MDYRK----EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLD 56
          M+  K    +   +D+ + L+  + +I++ YGKGAIM+LG + ++   IE VS+GSL LD
Sbjct: 1  MEDNKPVPPQTKPLDQDEILKTVMKEIEKTYGKGAIMKLGDKSNLT--IEAVSTGSLLLD 58

Query: 57 IALGIGGFPKGRIVEIYGP 75
           A+G+GG+PKGRI+EI+GP
Sbjct: 59 EAIGVGGYPKGRIIEIFGP 77


>gi|18389304|dbj|BAB84121.1| OsDmc1 protein [Oryza sativa Japonica Group]
          Length = 344

 Score = 86.8 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 99/272 (36%), Gaps = 35/272 (12%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K  EAA   + + +  G+           + +  +++GS  LD  LG GG     I E 
Sbjct: 78  DKICEAAEKLLSQGFMTGS-----DLLIKRKSVVRITTGSQALDELLG-GGIETLCITEA 131

Query: 73  YGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYA----RKLGVD---- 118
           +G   SGKT LA      +Q         G  A++D E             + G+D    
Sbjct: 132 FGEFRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAV 191

Query: 119 LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           L N++ ++  T E    +       +       +++DSV AL          G      +
Sbjct: 192 LDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRPLIVDSVIALFR----VDFSGRGELAER 247

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE--TTTGGNALKFYSSVRLDI 233
            + ++Q L +LT         +   NQ+    G      +     GG+ L   +++RL +
Sbjct: 248 QQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDLKKPAGGHVLAHAATIRLML 307

Query: 234 R------RVGSIKDKDSITGNQTRVKVVKNKM 259
           R      RV  I D  ++   +   +V    +
Sbjct: 308 RKGKGEQRVCKIFDAPNLPEGEAVFQVTSGGI 339


>gi|116206996|ref|XP_001229307.1| hypothetical protein CHGG_02791 [Chaetomium globosum CBS 148.51]
 gi|88183388|gb|EAQ90856.1| hypothetical protein CHGG_02791 [Chaetomium globosum CBS 148.51]
          Length = 350

 Score = 86.8 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 88/244 (36%), Gaps = 33/244 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  L  GG   G + E++G   +GK+ +        Q         G C +
Sbjct: 104 SITTGSKQLDTLLA-GGIETGSVTELFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLY 162

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     +    +           L N+  ++    +  L++      ++      ++
Sbjct: 163 IDTEGTFRPVRLLAVANRYGLSGEEVLDNVAYARAYNSDHQLQLLNQAAAMMCETRFSLL 222

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           V+DS  +L         +G      +   +++ LR L          +V  NQ+  ++  
Sbjct: 223 VVDSATSLYR----TDFLGRGELNSRQTHLAKFLRTLQRLADEFGIAVVITNQVVAQVDG 278

Query: 209 ----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               +    P+   GGN +   S+ R+ ++      R+  I D   +        + ++ 
Sbjct: 279 GPSAMFNPDPKKPIGGNIMAHSSTTRISLKKGRGETRIAKIYDSPCLPEGDALFAINEDG 338

Query: 259 MASP 262
           +  P
Sbjct: 339 IGDP 342


>gi|114228441|gb|ABI58231.1| Rad51 protein [Oryza sativa Indica Group]
          Length = 332

 Score = 86.8 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 89/244 (36%), Gaps = 24/244 (9%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            I  V++GS  LD  L  GG   G I EIYG   SGKT L        Q         G 
Sbjct: 92  EIIQVTTGSRELDKIL-DGGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDHGGGEGK 150

Query: 98  CAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAV 146
             ++DAE         ++           L+N+  ++    +    +      ++     
Sbjct: 151 ALYIDAEGTFRPQRFLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLGAASMMVETRF 210

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            I+++DS  AL  R +  G    S   M    +++ LR L          +V  NQ+  +
Sbjct: 211 AIMIVDSATALY-RTDFSGRGELSARQMH---LAKFLRSLQKLADEFGVAVVITNQVVAQ 266

Query: 207 IG--VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           +    MFG      GGN +   S+ RL +R+  + +    +  +    +       SP  
Sbjct: 267 VDGAAMFGPQIKPIGGNIMAHASTTRLFLRKGRAEERICKVVSSPCLAEAEARFQISPEG 326

Query: 265 QVEF 268
             + 
Sbjct: 327 VTDV 330


>gi|157112162|ref|XP_001657421.1| DNA repair protein rad51 [Aedes aegypti]
 gi|108878168|gb|EAT42393.1| DNA repair protein rad51 [Aedes aegypti]
          Length = 341

 Score = 86.4 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 88/246 (35%), Gaps = 31/246 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              I  +++GS  LD  LG GG   G I E++G   +GKT +        Q         
Sbjct: 98  RSEIIQLTTGSKELDKLLG-GGIETGSITELFGEFRTGKTQICHTLAVTCQLPVSQNGGE 156

Query: 96  GTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSG 144
           G C ++D E          +           L N++ ++    +  +++      ++   
Sbjct: 157 GKCLYIDTEGTFRPERLLAVAERYKLVGTDVLDNVVYARAFNSDHQMKLLVQASAMMVES 216

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  AL          G      +   + + LR L          +V  NQ+ 
Sbjct: 217 RYALLIVDSATALFR----TDYSGRGELNARQVQLGKFLRMLLRLADEFGVAVVITNQVV 272

Query: 205 MKIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
            ++    +    P+   GG+ L   S+ RL +R      R+  I D   +  ++    + 
Sbjct: 273 AQVDAAAMFTPDPKKPIGGHILAHASTTRLYLRKGRGETRICKIYDSPCLPESEAMYAIN 332

Query: 256 KNKMAS 261
            + +  
Sbjct: 333 ADGIGD 338


>gi|194474078|ref|NP_001124039.1| meiotic recombination protein DMC1/LIM15 homolog [Rattus
           norvegicus]
 gi|149065923|gb|EDM15796.1| rCG59573, isoform CRA_b [Rattus norvegicus]
          Length = 340

 Score = 86.4 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 51/242 (21%), Positives = 89/242 (36%), Gaps = 33/242 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +++GS   D  LG GG     I E +G   +GKT L+      +Q       +GG   F+
Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGADGYSGGKIIFI 159

Query: 102 DAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-----VDI 148
           D E+       R +           L N+L ++  T E  +E+ D +            +
Sbjct: 160 DTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKL 219

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +++DS+ AL          G      + + ++Q L +L          +   NQM    G
Sbjct: 220 LIVDSIMALFR----VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPG 275

Query: 209 VMFG---SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
                   P+   GG+ L   S+ R+ +R      R+  I D   +  N+    +    +
Sbjct: 276 ATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITTGGI 335

Query: 260 AS 261
             
Sbjct: 336 GD 337


>gi|14579057|gb|AAK69130.1| RecA [Bacteroides uniformis]
          Length = 101

 Score = 86.4 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 73/101 (72%), Positives = 86/101 (85%)

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           DAEHA D  YA KLGVD+ NLLISQPD GEQAL+I D L+ S A+DIIVIDSVAALTP+A
Sbjct: 1   DAEHAFDRFYAAKLGVDVYNLLISQPDNGEQALDIADQLIHSSAIDIIVIDSVAALTPKA 60

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           EIEGDMGE+  G+QARLMSQALRKLTS++S+++   +FINQ
Sbjct: 61  EIEGDMGENKVGLQARLMSQALRKLTSAVSKTRTTCIFINQ 101


>gi|322698012|gb|EFY89786.1| DNA repair protein RAD51 [Metarhizium acridum CQMa 102]
          Length = 348

 Score = 86.4 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 92/244 (37%), Gaps = 33/244 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  L  GG   G + E++G   +GK+ +        Q         G C +
Sbjct: 102 SITTGSKNLDTLLA-GGIETGSVTELFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLY 160

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     +    +           L N+  ++    +  L++      ++      ++
Sbjct: 161 IDTEGTFRPVRLLAVANRFGLSGEEVLDNVAYARAYNSDHQLQLLNQAAAMMCETRFSLL 220

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           V+DS  +L  R +  G    S    +   +++ +R L          +V  NQ+  ++  
Sbjct: 221 VVDSATSLY-RTDFCGRGELS---NRQTHLAKFMRTLQRLADEFGIAVVITNQVVAQVDG 276

Query: 209 ----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               +    P+   GGN +   S+ R+ ++      R+  I D   +  + T   + ++ 
Sbjct: 277 GPSAMFNPDPKKPIGGNIIAHASTTRISLKKGRGETRIAKIYDSPCLPESDTLFAINEDG 336

Query: 259 MASP 262
           +  P
Sbjct: 337 IGDP 340


>gi|213515370|ref|NP_001134027.1| DNA repair protein RAD51 homolog A [Salmo salar]
 gi|209156210|gb|ACI34337.1| DNA repair protein RAD51 homolog A [Salmo salar]
          Length = 338

 Score = 86.4 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 83/244 (34%), Gaps = 31/244 (12%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            I  +S+GS  LD  L  GG   G I E++G   +GKT L        Q         G 
Sbjct: 97  EIIQISTGSKELDKLL-QGGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGK 155

Query: 98  CAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQA---LEITDMLVRSGAV 146
             ++D E          +           L N+  ++    +     L     ++     
Sbjct: 156 AMYIDTEGTFRPERLLAVAERYGLVGSDVLDNVAYARAFNTDHQTQLLYQASAMMAESRY 215

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++++DS  AL          G      +   + + LR L          +V  NQ+  +
Sbjct: 216 ALLIVDSATALYR----TDYSGRGELAARQGHLGRFLRMLLRLADEFGVAVVITNQVVAQ 271

Query: 207 IG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKN 257
           +    +    P+   GGN +   S+ RL +R      R+  I D   +  ++    +  +
Sbjct: 272 VDGAAMFSADPKKPIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPESEAMFAINAD 331

Query: 258 KMAS 261
            +  
Sbjct: 332 GVGD 335


>gi|169806553|ref|XP_001828021.1| DNA repair and recombination protein RAD51 [Enterocytozoon bieneusi
           H348]
 gi|161779161|gb|EDQ31186.1| DNA repair and recombination protein RAD51 [Enterocytozoon bieneusi
           H348]
          Length = 337

 Score = 86.4 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 96/247 (38%), Gaps = 32/247 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
            + +  +++GS  LD  L  GG   G I E++G   +GK+ L        Q         
Sbjct: 93  RKEVVYITTGSTELDKLLN-GGIESGTITEVFGEFRTGKSQLCHTVAVTCQLPKENGGGN 151

Query: 96  GTCAFVDAEHALDSIY----ARKLGVD----LKNLLISQPDTGEQA---LEITDMLVRSG 144
           G C ++D E    +      A +LG+D    L N+  ++    +     L     ++   
Sbjct: 152 GKCMYIDTEGTFRTERLIPIAERLGLDPNEVLDNISYARAFNSDHQNNLLIHASAMMSET 211

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  +L  R +  G    S   +    +++ LR LT+        ++  NQ+ 
Sbjct: 212 KYAVLIVDSATSLY-RTDYNGRGELSARQIS---LARFLRSLTNLAETYGIAVIITNQVV 267

Query: 205 MKIG----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKV 254
             +     V  G  +   GG+ +   S+ RL  R      R+  I D   +  ++    +
Sbjct: 268 ANVDGAVAVFGGDVKKPIGGHIIAHASNTRLYFRKGRGETRICKIYDSPLLPESEASFSI 327

Query: 255 VKNKMAS 261
            +  +A 
Sbjct: 328 TEGGIAD 334


>gi|68637249|emb|CAF21778.1| recombinase A [Lactobacillus iners]
          Length = 107

 Score = 86.4 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 66/107 (61%), Positives = 90/107 (84%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           +D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+
Sbjct: 1   MDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDILVVDSVAALVPRAEIEGE 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           MG++  G+QARLMSQALRKL+ +IS++K I +FINQ+R K+G MFG+
Sbjct: 61  MGDAHVGLQARLMSQALRKLSGNISKTKTIAIFINQIREKVGAMFGN 107


>gi|317033565|ref|XP_001395134.2| meiotic recombination protein DMC1 [Aspergillus niger CBS 513.88]
          Length = 337

 Score = 86.4 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 92/250 (36%), Gaps = 32/250 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTG 95
            + I  +S+GS   D  LG GGF    I E++G    GKT L+      +Q        G
Sbjct: 92  RKRIVRISTGSKQFDSILG-GGFQSMSISEVFGEFRCGKTQLSHTMSVVAQLPKELGGAG 150

Query: 96  GTCAFVDAEHALDSIYA----RKLGVDLK----NLLISQPDTGEQALEITDMLVRSG--- 144
           G  A++D E             + GVD      N+  ++    E  LE+ + L +     
Sbjct: 151 GKVAYIDTEGTFRPERIAQIAERFGVDADAAQENIAYARALNSEHQLELLNTLSKEFAGG 210

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              +++IDS+     R +  G         + + ++Q L KL          ++  NQ++
Sbjct: 211 EYRLLIIDSIMNCF-RVDYCGRGE---LADRQQKLNQFLMKLAHMAEEFNICVLMTNQVQ 266

Query: 205 MKIGVM----FGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKV 254
              G              GG+ L   S+ R+ +R      RV  I+D       +    +
Sbjct: 267 SDPGASALFAGADGRKPVGGHVLAHASATRVLLRKGRGEERVAKIQDSPDCPEREATYVI 326

Query: 255 VKNKMASPFK 264
               +  P K
Sbjct: 327 TNGGINDPDK 336


>gi|153082|gb|AAA26667.1| recombination and repair protein [Staphylococcus aureus]
          Length = 104

 Score = 86.4 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 69/104 (66%), Positives = 87/104 (83%)

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
            YA+ LGVD+ NL +SQPD GEQ LEI +  VRSGAVDI+V+DSVAALTP+AEIEG+MG+
Sbjct: 1   EYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD 60

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           +  G+QARLMSQALRKL+ +IS+S    +FINQ+R K+GVMFG+
Sbjct: 61  THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGN 104


>gi|284162221|ref|YP_003400844.1| DNA repair and recombination protein RadB [Archaeoglobus profundus
           DSM 5631]
 gi|284012218|gb|ADB58171.1| DNA repair and recombination protein RadB [Archaeoglobus profundus
           DSM 5631]
          Length = 220

 Score = 86.4 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 86/227 (37%), Gaps = 22/227 (9%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS  LD  L  GGF  G + +I+G   +GKT++ L +   +   G   A++D E  L
Sbjct: 3   IPTGSRCLDKLLS-GGFESGTVTQIFGASGTGKTSICLMSAYSAVSQGYKVAYIDTE-GL 60

Query: 108 DSIYARKLGVDLKNLLISQPD-------TGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
                 ++ VD   L                   E+  +      + ++++DS   L  R
Sbjct: 61  SPERVSQIFVDKDKLKEVYIHDVIDFKQQSAAIKELAKLCKEFENLKLVIVDSFTFLY-R 119

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
           +E+E    E    ++  L++Q    L     +    +V  NQ+   +       E   GG
Sbjct: 120 SELEDL--EKQMKVKRELIAQLTF-LLGLARKFDLAVVVTNQVFTDV---RTGEEKPLGG 173

Query: 221 NALKFYSSVRL------DIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
            ++   S V +      D RR   +K +    G     ++    +  
Sbjct: 174 PSIDHISKVIIGLEKLNDKRRATLVKHRSKPEGESCEFRITDRGIEP 220


>gi|154424261|gb|ABS82016.1| recombinase A [Lactobacillus casei]
          Length = 105

 Score = 86.4 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 71/105 (67%), Positives = 88/105 (83%)

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
           T A++DAE+A+D  YA  LGV++  LL+SQPDTGEQ LEI D LV SGA+DI+VIDSVAA
Sbjct: 1   TAAYIDAENAMDLKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAA 60

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           L PRAEIEGDMG++  G+QARLMSQALRKL+ SI+++K I +FIN
Sbjct: 61  LVPRAEIEGDMGDAHVGLQARLMSQALRKLSGSINKTKTIALFIN 105


>gi|258597225|ref|XP_001347762.2| Rad51 homolog [Plasmodium falciparum 3D7]
 gi|25991345|gb|AAN76809.1|AF452489_1 recombinase Rad51 [Plasmodium falciparum]
 gi|254832605|gb|AAN35675.2| Rad51 homolog [Plasmodium falciparum 3D7]
          Length = 350

 Score = 86.0 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 82/251 (32%), Gaps = 31/251 (12%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-- 94
                 + +   ++GS  LD  L  GG   G I E++G   +GK+ L        Q    
Sbjct: 101 DYHDARQNLIKFTTGSKQLDALL-KGGIETGGITELFGEFRTGKSQLCHTLAITCQLPIE 159

Query: 95  ----GGTCAFVDAEHALDSIYARKLGVDLKNLLISQ-----------PDTGEQALEITDM 139
                G C ++D E          +                       D   + L     
Sbjct: 160 QSGGEGKCLWIDTEGTFRPERIVAIAKRYGLHPTDCLNNIAYAKAYNCDHQTELLIDASA 219

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           ++      ++++DS  AL  R+E    +G      +   + + LR L          ++ 
Sbjct: 220 MMADARFALLIVDSATALY-RSEY---IGRGELANRQSHLCRFLRGLQRIADIYGVAVII 275

Query: 200 INQMRMKIGVMFGS---PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQT 250
            NQ+  K+  M       +   GGN +   S  RL +R      R+  I D   +   + 
Sbjct: 276 TNQVVAKVDAMSMFGGHEKIPIGGNIIAHASQTRLYLRKGRGESRICKIYDSPVLPEGEA 335

Query: 251 RVKVVKNKMAS 261
              + +  +A 
Sbjct: 336 VFAITEGGIAD 346


>gi|221125136|ref|XP_002158412.1| PREDICTED: DMC1 homologue CnDMC1, partial [Hydra magnipapillata]
          Length = 291

 Score = 86.0 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 90/251 (35%), Gaps = 33/251 (13%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------ 92
             I +    +S+GS+ LD  LG GG     I E +G   +GKT ++      +Q      
Sbjct: 43  SEIRKQCFRISTGSMELDKLLG-GGIESMSITEAFGEFRTGKTQISHTLCVTAQLPGPNN 101

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSG 144
             GG   F+D E+       R +           L N++  +  T EQ  E+ DM+    
Sbjct: 102 YPGGKVMFIDTENTFRPNRLRSIADRFNLDHEAMLGNIVFCRAYTSEQQFEVLDMVSAKF 161

Query: 145 A-----VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
                   +++IDS+ AL          G      + + + Q L KL          +  
Sbjct: 162 HEEAGVFKLLIIDSIMALFR----VDYSGRGELADRQQKLGQMLSKLQKISEEYNVAVWI 217

Query: 200 INQMRMKIGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQT 250
            NQM    G        P+   GG+ L   S+ R+ +R      R+  I D   +   + 
Sbjct: 218 TNQMTADPGATMSFQSDPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPDLPECEA 277

Query: 251 RVKVVKNKMAS 261
              +    +  
Sbjct: 278 TYAITNEGITD 288


>gi|15027117|emb|CAC44778.1| RecA protein [Lactobacillus plantarum]
          Length = 107

 Score = 86.0 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 71/107 (66%), Positives = 92/107 (85%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD +YA  LGV++ +LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEIEG+
Sbjct: 1   LDPVYAEHLGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDILVVDSVAALVPRAEIEGE 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           MG++  G+QARLMSQALRKL+ +++++K I +FINQ+R K+GVMFG+
Sbjct: 61  MGDAHAGLQARLMSQALRKLSGTLNKTKTIALFINQIREKVGVMFGN 107


>gi|68635350|emb|CAF21745.1| recombinase A [Lactobacillus amylolyticus]
          Length = 107

 Score = 86.0 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 67/107 (62%), Positives = 91/107 (85%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           +D  YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+
Sbjct: 1   MDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDILVVDSVAALVPRAEIEGE 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           MG++  G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+
Sbjct: 61  MGDAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGN 107


>gi|6714639|dbj|BAA89533.1| LIM15/DMC1 homolog [Coprinopsis cinerea]
          Length = 345

 Score = 86.0 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 62/282 (21%), Positives = 103/282 (36%), Gaps = 38/282 (13%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K M+     K  EAA       +  G            + + V+S+GS  +D  LG GG 
Sbjct: 70  KGMSEAKVEKIKEAAQKIHGSSFATG-----VEIQDKRKRVLVISTGSKLVDGILG-GGV 123

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKLGVD 118
               I E+YG   +GKT LA      +Q         G  A++D E        R +   
Sbjct: 124 MSQSITEVYGEYRTGKTQLAHTMSVVAQLPPEYGGAAGKVAYIDTEGTFRPDRIRAIADR 183

Query: 119 --------LKNLLISQPDTGEQALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEGD 166
                   L+N+L ++    E  +E+ +      A D    +++IDS+ AL         
Sbjct: 184 FGVDGTMALENILYARAFNSEHQMELINECSARFAEDKDFRLLIIDSIMALFR----VDY 239

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS----PETTTGGNA 222
            G      + + ++Q L KLT         ++  NQ++   G              GG+ 
Sbjct: 240 SGRGELSERQQKLAQMLSKLTKLSEEFNIAVLMTNQVQSDPGATMTFVAGGALKPIGGHI 299

Query: 223 LKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
           L   S+ R+ +R      RV  + D      ++   K+ +  
Sbjct: 300 LSHASATRIFLRKGRAEERVAKLVDSPDRPESEASYKLDEGG 341


>gi|115488638|ref|NP_001066806.1| Os12g0497300 [Oryza sativa Japonica Group]
 gi|18874073|dbj|BAB85492.1| Rad51 [Oryza sativa Japonica Group]
 gi|18874075|dbj|BAB85493.1| Rad51 [Oryza sativa Japonica Group]
 gi|108862704|gb|ABA98592.2| DNA repair protein RAD51, putative, expressed [Oryza sativa
           Japonica Group]
 gi|113649313|dbj|BAF29825.1| Os12g0497300 [Oryza sativa Japonica Group]
          Length = 341

 Score = 86.0 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 89/244 (36%), Gaps = 24/244 (9%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            I  V++GS  LD  L  GG   G I EIYG   SGKT L        Q         G 
Sbjct: 101 EIIQVTTGSRELDKIL-DGGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGK 159

Query: 98  CAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAV 146
             ++DAE         ++           L+N+  ++    +    +      ++     
Sbjct: 160 ALYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRF 219

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            I+++DS  AL  R +  G    S   M    +++ LR L          +V  NQ+  +
Sbjct: 220 AIMIVDSATALY-RTDFSGRGELSARQMH---LAKFLRSLQKLADEFGVAVVITNQVVAQ 275

Query: 207 IG--VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           +    MFG      GGN +   S+ RL +R+  + +    +  +    +       SP  
Sbjct: 276 VDGAAMFGPQIKPIGGNIMAHASTTRLFLRKGRAEERICKVVSSPCLAEAEARFQISPEG 335

Query: 265 QVEF 268
             + 
Sbjct: 336 VTDV 339


>gi|134118469|ref|XP_772121.1| hypothetical protein CNBM1660 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50254728|gb|EAL17474.1| hypothetical protein CNBM1660 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 330

 Score = 86.0 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 90/252 (35%), Gaps = 33/252 (13%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG--- 95
                 +  +++GS  +D  LG GG     I E++G   +GKT L       +Q      
Sbjct: 83  ADRRANVVYITTGSKSVDAMLG-GGIATQSITEVFGEYRTGKTQLCHTLCVSTQLPEDQG 141

Query: 96  ---GTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQAL----EITDML 140
              G  A++D E        R +         + L N+L ++  + E       ++    
Sbjct: 142 GGSGKVAYIDTEGTFRPDRVRAVADRFGVDSNMALDNVLCARAWSSEHQCDLLVDLAIRF 201

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           V   A  ++++DS+  L  +       G      + + ++Q L +L          +V  
Sbjct: 202 VEERAYKLLIVDSIMNLFRQ----DYSGRGELSERQQKLNQFLARLQKLAEEFNIAIVLT 257

Query: 201 NQMRMKIG----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQT 250
           NQ++   G        S     GG+ L   S+ R+ +R      R+  ++D   +   + 
Sbjct: 258 NQVQADPGAAAMFAAASSAKPVGGHILAHASATRIALRKGRGDERIAKLQDSPDMPEGEA 317

Query: 251 RVKVVKNKMASP 262
              +       P
Sbjct: 318 TYTLRTGGWEDP 329


>gi|320166664|gb|EFW43563.1| HsLim15 [Capsaspora owczarzaki ATCC 30864]
          Length = 345

 Score = 86.0 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 58/269 (21%), Positives = 103/269 (38%), Gaps = 41/269 (15%)

Query: 29  KGAIMQLGSQGSI--------FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           K A+ ++G  G +         + +  +S+GS  L   LG GG     I EI+G   +GK
Sbjct: 79  KEAVAKMGDAGFMTAMEYSVKRQMVFRISTGSAELSKLLG-GGIESMAITEIFGEFRTGK 137

Query: 81  TTLALHTIAQSQKT---GGTC---AFVDAEHALDSIY----ARKLGVD----LKNLLISQ 126
           T +       +Q     GG C   AF+D E           A + G+D    L+N++ ++
Sbjct: 138 TQICHTLCVTTQLPVEVGGACGKVAFIDTEGTFRPDRLGPIADRFGLDRNAVLENVMFAR 197

Query: 127 PDTGEQALEITDMLVRSG-----AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
               E  +++ +              ++++DSV A+          G      + + + Q
Sbjct: 198 AYNSEHQMDLINQCAAKFAEEKGVYRLLIVDSVMAMFR----VDFSGRGELAERQQRLGQ 253

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIG---VMFGSPETTTGGNALKFYSSVRLDIR---- 234
            L +L          +V  NQM    G        P+   GGN +   S+ RL +R    
Sbjct: 254 MLSRLMKIAEEFNVAVVITNQMTADPGAGLTFVPDPKKPIGGNIIAHASTTRLYLRKGRA 313

Query: 235 --RVGSIKDKDSITGNQTRVKVVKNKMAS 261
             RV  I D  ++  ++    + +  +  
Sbjct: 314 ETRVCKIYDSPNLPESEAMFAISEGGIID 342


>gi|58262116|ref|XP_568468.1| meiotic recombination-related protein [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|57230641|gb|AAW46951.1| meiotic recombination-related protein, putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 323

 Score = 85.7 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 90/252 (35%), Gaps = 33/252 (13%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG--- 95
                 +  +++GS  +D  LG GG     I E++G   +GKT L       +Q      
Sbjct: 76  ADRRANVVYITTGSKSVDAMLG-GGIATQSITEVFGEYRTGKTQLCHTLCVSTQLPEDQG 134

Query: 96  ---GTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQAL----EITDML 140
              G  A++D E        R +         + L N+L ++  + E       ++    
Sbjct: 135 GGSGKVAYIDTEGTFRPDRVRAVADRFGVDSNMALDNVLCARAWSSEHQCDLLVDLAIRF 194

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           V   A  ++++DS+  L  +       G      + + ++Q L +L          +V  
Sbjct: 195 VEERAYKLLIVDSIMNLFRQ----DYSGRGELSERQQKLNQFLARLQKLAEEFNIAIVLT 250

Query: 201 NQMRMKIG----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQT 250
           NQ++   G        S     GG+ L   S+ R+ +R      R+  ++D   +   + 
Sbjct: 251 NQVQADPGAAAMFAAASSAKPVGGHILAHASATRIALRKGRGDERIAKLQDSPDMPEGEA 310

Query: 251 RVKVVKNKMASP 262
              +       P
Sbjct: 311 TYTLRTGGWEDP 322


>gi|18857701|emb|CAD23442.1| putative RAD1 protein [Pleurotus ostreatus]
          Length = 340

 Score = 85.7 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 91/246 (36%), Gaps = 32/246 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           +++G   LD  LG GG   G I E++G   +GK+ +        Q         G C ++
Sbjct: 100 ITTGXKQLDALLG-GGIETGAITEMFGEFRTGKSQICHTLAVTCQLPVSMGGGEGKCLYI 158

Query: 102 DAEHALDSIY----ARKLGVDLKNLLIS-------QPDTGEQALEITDMLVRSGAVDIIV 150
           D E     +     A + G++ + +L +         D   Q L     L+      +++
Sbjct: 159 DTEGTFRPVRLLAVAERYGLNGEEVLDNVAYARAYNADHQNQLLTSATRLMSESRFCLLI 218

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV- 209
           +DS  AL          G      +   + + LR L          +V  NQ+       
Sbjct: 219 VDSCTALYR----TDFSGRGELSSRQNHLGKFLRTLQRLADEFGIAVVITNQVMSNPDAA 274

Query: 210 ---MFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMA 260
                G+ +   GGN +   S+ RL ++      R   I D   +   +T+  ++++ + 
Sbjct: 275 AGPYAGNEKKPIGGNIMAHASTTRLQLKKGRGTTRTCKIYDSPCLPEMETQFAILQSGIG 334

Query: 261 SPFKQV 266
            P ++ 
Sbjct: 335 DPEEET 340


>gi|11994855|dbj|BAB19960.1| DMC1 homologue CnDMC1 [Hydra vulgaris]
          Length = 331

 Score = 85.7 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 90/251 (35%), Gaps = 33/251 (13%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------ 92
             I +    +S+GS+ LD  LG GG     I E +G   +GKT ++      +Q      
Sbjct: 83  SEIRKQCFRISTGSMELDKLLG-GGIESMSITEAFGEFRTGKTQISHTLCVTAQLPGPNN 141

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSG 144
             GG   F+D E+       R +           L N++  +  T EQ  E+ DM+    
Sbjct: 142 YPGGKVMFIDTENTFRPNRLRSIADRFNLDHEAMLGNIVFCRAYTSEQQFEVLDMVSAKF 201

Query: 145 A-----VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
                   +++IDS+ AL          G      + + + Q L KL          +  
Sbjct: 202 HEEAGVFKLLIIDSIMALFR----VDYSGRGELADRQQKLGQMLSKLQKISEEYNVAVWI 257

Query: 200 INQMRMKIGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQT 250
            NQM    G        P+   GG+ L   S+ R+ +R      R+  I D   +   + 
Sbjct: 258 TNQMTADPGATMSFQSDPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPDLPECEA 317

Query: 251 RVKVVKNKMAS 261
              +    +  
Sbjct: 318 TYAITNEGITD 328


>gi|291246135|gb|ADD85192.1| RecA [Borrelia recurrentis]
          Length = 111

 Score = 85.7 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 68/106 (64%), Positives = 94/106 (88%)

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           L+I + L+RSG VD+IV+DSVAAL P+AEI+G+MG++  G+QARLMS+ALRK+T+ +S+S
Sbjct: 1   LDIAEYLIRSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGLQARLMSKALRKITAILSKS 60

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
              ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V  +
Sbjct: 61  NACIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKVEQV 106


>gi|262272837|gb|ACY40638.1| RecA [Leptotrichia sp. HKU24]
          Length = 102

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 76/102 (74%), Positives = 91/102 (89%)

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           QK GGT AF+DAEHALD +YA+ LGV++  LLISQPDTGEQALEI+DMLVRSGA+D+IV+
Sbjct: 1   QKAGGTVAFIDAEHALDPVYAKALGVNIDELLISQPDTGEQALEISDMLVRSGAMDVIVV 60

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           DSVAAL P+AEIEG+MG+   G+QARLMS+ALRKLT SIS+S
Sbjct: 61  DSVAALVPKAEIEGEMGDQQMGLQARLMSKALRKLTGSISKS 102


>gi|15027119|emb|CAC44771.1| RecA protein [Lactobacillus paraplantarum]
          Length = 107

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 71/107 (66%), Positives = 91/107 (85%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           LD IYA  LGV++ +LL+SQPD GEQ LEI D LV SGAVDI+V+DSVAAL PRAEIEG+
Sbjct: 1   LDPIYAEHLGVNIDDLLLSQPDIGEQGLEIADALVSSGAVDILVVDSVAALVPRAEIEGE 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           MG++  G+QARLMSQALRKL+ +++++K I +FINQ+R K+GVMFG+
Sbjct: 61  MGDAHVGLQARLMSQALRKLSGTLNKTKTIALFINQIREKVGVMFGN 107


>gi|67606014|ref|XP_666724.1| meiotic recombination protein DMC1-like protein [Cryptosporidium
           hominis TU502]
 gi|54657771|gb|EAL36494.1| meiotic recombination protein DMC1-like protein [Cryptosporidium
           hominis]
          Length = 342

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 56/279 (20%), Positives = 103/279 (36%), Gaps = 41/279 (14%)

Query: 13  SKALEAA--LSQIQRVYGKGA-IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            K +EAA  L Q    +  G+ +M      S  + I  +++GS   D  L +GGF    I
Sbjct: 74  EKIVEAAQKLDQ-SSSFQSGSEVM------SRRQNILRITTGSEQFDKML-MGGFESMCI 125

Query: 70  VEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKLGVD----- 118
            EI+G    GKT +       +Q         G   F+D E         K+        
Sbjct: 126 TEIFGENRCGKTQICHTLCVAAQLPLEMNGGNGKVCFIDTEGTFRPERIVKIAERFGVQG 185

Query: 119 ---LKNLLISQPDTGEQALEITDMLVRSGAVD---IIVIDSVAALTPRAEIEGDMGESLP 172
              L N++ ++  T E   ++          +   ++++DS+ AL  R E  G       
Sbjct: 186 DVALDNIMYARAYTHEHLNQLISAAAGKMIEEKFALLIVDSIIALF-RTEFSGR---GEL 241

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKI---GVMFGSPETTTGGNALKFYSSV 229
             + +++++ L KL     +    +V  N +            +     GG+ +   S V
Sbjct: 242 AERQQILNKTLSKLNKLADQFNIAIVMTNHVMADPAGGMSFMPNVAKPVGGHVIGHASHV 301

Query: 230 RLDIR------RVGSIKDKDSITGNQTRVKVVKNKMASP 262
           RL +R      RV  +     +  ++  +++    +  P
Sbjct: 302 RLSLRKGKGEQRVCKVYGSPHLPESECVIQLSDGGIIDP 340


>gi|166714610|gb|ABY88035.1| RecA [Stenotrophomonas sp. ICB194]
          Length = 89

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 63/88 (71%), Positives = 75/88 (85%), Gaps = 2/88 (2%)

Query: 197 LVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           ++FINQ+R+KIGVM    SPETTTGGNALKFY+SVRLDIRR+G+IK  D I GNQT++KV
Sbjct: 2   VIFINQLRIKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIGNQTKIKV 61

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGEL 282
           VKNK+A PFKQV  +I+YGEGIS  GEL
Sbjct: 62  VKNKLAPPFKQVITEILYGEGISREGEL 89


>gi|66362764|ref|XP_628348.1| meiotic recombination protein DMC1-like protein [Cryptosporidium
           parvum Iowa II]
 gi|46229395|gb|EAK90213.1| meiotic recombination protein DMC1-like protein [Cryptosporidium
           parvum Iowa II]
          Length = 342

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 56/279 (20%), Positives = 103/279 (36%), Gaps = 41/279 (14%)

Query: 13  SKALEAA--LSQIQRVYGKGA-IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
            K +EAA  L Q    +  G+ +M      S  + I  +++GS   D  L +GGF    I
Sbjct: 74  EKIVEAAQKLDQ-SSSFQSGSEVM------SRRQNILRITTGSEQFDKML-MGGFESMCI 125

Query: 70  VEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKLGVD----- 118
            EI+G    GKT +       +Q         G   F+D E         K+        
Sbjct: 126 TEIFGENRCGKTQICHTLCVAAQLPLEMNGGNGKVCFIDTEGTFRPERIVKIAERFGVQG 185

Query: 119 ---LKNLLISQPDTGEQALEITDMLVRSGAVD---IIVIDSVAALTPRAEIEGDMGESLP 172
              L N++ ++  T E   ++          +   ++++DS+ AL  R E  G       
Sbjct: 186 DVALDNIMYARAYTHEHLNQLISAAAGKMIEEKFALLIVDSIIALF-RTEFSGR---GEL 241

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKI---GVMFGSPETTTGGNALKFYSSV 229
             + +++++ L KL     +    +V  N +            +     GG+ +   S V
Sbjct: 242 AERQQILNKTLSKLNKLADQFNIAIVMTNHVMADPAGGMSFMPNVAKPVGGHVIGHASHV 301

Query: 230 RLDIR------RVGSIKDKDSITGNQTRVKVVKNKMASP 262
           RL +R      RV  +     +  ++  +++    +  P
Sbjct: 302 RLSLRKGKGEQRVCKVYGSPHLPESECVIQLSDGGIIDP 340


>gi|261199103|ref|XP_002625953.1| meiotic recombinase Dmc1 [Ajellomyces dermatitidis SLH14081]
 gi|239595105|gb|EEQ77686.1| meiotic recombinase Dmc1 [Ajellomyces dermatitidis SLH14081]
          Length = 337

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 95/260 (36%), Gaps = 35/260 (13%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG Q    + +  +S+GS   D  L  GGF    I E+YG    GKT L+      +Q
Sbjct: 86  MELGHQ---RKRVVRISTGSKQFDSILA-GGFQSMSISEVYGEFRCGKTQLSHTMSVVAQ 141

Query: 93  ------KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITD 138
                    G  A++D E         ++           L+N+  ++    E  LE+ +
Sbjct: 142 LPKDMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELLN 201

Query: 139 MLVRSG---AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
            L +        +++IDS+     R +  G         + + ++Q L KL         
Sbjct: 202 TLAKEFAGGEYRLLIIDSIMNCF-RVDYCGRGE---LADRQQKLNQFLMKLAHMAEEFNV 257

Query: 196 ILVFINQMRMKIGVM----FGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
            ++  NQ++   G              GG+ L   S+ R+ +R      RV  I+D    
Sbjct: 258 CVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTRVLLRKGRGDERVAKIQDSPDC 317

Query: 246 TGNQTRVKVVKNKMASPFKQ 265
              +    +    +  P K 
Sbjct: 318 PEREAIYVITNGGINDPDKM 337


>gi|213421034|ref|ZP_03354100.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 91

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 59/91 (64%), Positives = 81/91 (89%)

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           ++G+S  G+ AR+MSQA+RKL  ++ +S  +L+FINQ+RMKIGVMFG+PETTTGGNALKF
Sbjct: 1   EIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKF 60

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           Y+SVRLDIRR+G++K+ D++ G++TRVKVVK
Sbjct: 61  YASVRLDIRRIGAVKEGDNVVGSETRVKVVK 91


>gi|295981638|emb|CBL88082.1| recombinase A [Blastochloris gulmargensis]
 gi|295981642|emb|CBL88084.1| recombinase A [Blastochloris sulfoviridis]
          Length = 103

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 79/102 (77%), Positives = 95/102 (93%)

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAALTP+AEIEG+MG+S  
Sbjct: 2   EKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAALTPKAEIEGEMGDSHV 61

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMFGSP
Sbjct: 62  GLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSP 103


>gi|70982368|ref|XP_746712.1| meiotic recombination protein (Dmc1) [Aspergillus fumigatus Af293]
 gi|66844336|gb|EAL84674.1| meiotic recombination protein (Dmc1), putative [Aspergillus
           fumigatus Af293]
 gi|159123045|gb|EDP48165.1| meiotic recombination protein (Dmc1), putative [Aspergillus
           fumigatus A1163]
          Length = 338

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 94/259 (36%), Gaps = 35/259 (13%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  Q    + +  +S+GS   D  LG GGF    I E++G    GKT L+      +Q
Sbjct: 87  MELSHQ---RKRVVKISTGSKQFDSILG-GGFQSMSISEVFGEFRCGKTQLSHTMSVVAQ 142

Query: 93  ------KTGGTCAFVDAEHALDSIYARKLGVDL--------KNLLISQPDTGEQALEITD 138
                    G  A++D E         ++            +N+  ++    E  LE+ +
Sbjct: 143 LPKEMGGADGKVAYIDTEGTFRPERIAQIAERFSVDPDSAQENIAYARALNSEHQLELLN 202

Query: 139 MLVRSG---AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
            L R        +++IDS+     R +  G         + + ++Q L +L         
Sbjct: 203 TLSREFAGGEYRLLIIDSIMNCF-RVDYCGRGE---LADRQQKLNQFLMRLAHMAEEFNV 258

Query: 196 ILVFINQMRMKIGVM----FGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
            ++  NQ++   G              GG+ L   S+ R+ +R      RV  I+D    
Sbjct: 259 CVLMTNQVQSDPGASALFAGADGRKPVGGHVLAHASTTRVLLRKGRGEERVAKIQDSPDC 318

Query: 246 TGNQTRVKVVKNKMASPFK 264
              +    +    +  P K
Sbjct: 319 PEREATYVITNGGINDPDK 337


>gi|118355624|ref|XP_001011071.1| DNA repair protein RAD51 containing protein [Tetrahymena
           thermophila]
 gi|3237383|gb|AAC39117.1| Rad51 [Tetrahymena thermophila]
 gi|89292838|gb|EAR90826.1| DNA repair protein RAD51 containing protein [Tetrahymena
           thermophila SB210]
          Length = 331

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 98/283 (34%), Gaps = 36/283 (12%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K M      K L+ A   +   +   A           + +  +++GS  LD  LG GGF
Sbjct: 56  KGMTEAKIDKILDVAAKLVPNDFQTAA-----EYYVKRQSVINLTTGSTELDKLLG-GGF 109

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIY----ARK 114
             G + EI+G   +GKT +        Q         G   ++D E           A +
Sbjct: 110 ETGSLTEIFGEFRTGKTQICHTLCITCQLPKEKGGGEGKAMYIDTEGTFRPERLESIAER 169

Query: 115 LGVDLKNLLISQPD-------TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
            G+D +  + +             + L     L+      ++++DS  AL          
Sbjct: 170 FGLDPQECMENVAYARAFNCDQQNKLLVQAAALMAESKYALLIVDSATALYR----TDYS 225

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG---VMFGSPETTTGGNALK 224
           G     ++   + + LR L          +V  NQ+  ++    +  G  +   GGN + 
Sbjct: 226 GRGELSVRQNHLGKFLRNLQRLADEFGIAVVITNQVMSQVDGAAMFAGDMKKPIGGNIMA 285

Query: 225 FYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
             S+ RL +R      R+  I D   +  ++    + K  +  
Sbjct: 286 HASTTRLYLRKGRGESRICKIYDSPCLPESEAIYAIGKGGIED 328


>gi|239609785|gb|EEQ86772.1| meiotic recombinase Dmc1 [Ajellomyces dermatitidis ER-3]
          Length = 337

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 55/259 (21%), Positives = 95/259 (36%), Gaps = 35/259 (13%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG Q    + +  +S+GS   D  L  GGF    I E+YG    GKT L+      +Q
Sbjct: 86  MELGHQ---RKRVVRISTGSKQFDSILA-GGFQSMSISEVYGEFRCGKTQLSHTMSVVAQ 141

Query: 93  ------KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITD 138
                    G  A++D E         ++           L+N+  ++    E  LE+ +
Sbjct: 142 LPKDMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELLN 201

Query: 139 MLVRSG---AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
            L +        +++IDS+     R +  G         + + ++Q L KL         
Sbjct: 202 TLAKEFAGGEYRLLIIDSIMNCF-RVDYCGRGE---LADRQQKLNQFLMKLAHMAEEFNV 257

Query: 196 ILVFINQMRMKIGVM----FGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
            ++  NQ++   G              GG+ L   S+ R+ +R      RV  I+D    
Sbjct: 258 CVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTRVLLRKGRGDERVAKIQDSPDC 317

Query: 246 TGNQTRVKVVKNKMASPFK 264
              +    +    +  P K
Sbjct: 318 PEREAIYVITNGGINDPDK 336


>gi|63852084|dbj|BAD98460.1| RecA homolog Dmc1 [Oreochromis niloticus]
          Length = 342

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 91/251 (36%), Gaps = 33/251 (13%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------ 92
            +  + +  V++GS   D  LG GG     I E +G   +GKT L+      +Q      
Sbjct: 94  SARRKQVFHVTTGSQEFDKLLG-GGVESMAITEAFGEFRTGKTQLSHTLCVTAQLPGEDG 152

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSG 144
            +GG   F+D E+       R +           L N+L ++  T E  +E+ D +    
Sbjct: 153 YSGGKVIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDFVAAKF 212

Query: 145 A-----VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
                   +++IDS+ AL          G      + + ++Q L +L          +  
Sbjct: 213 HEEGGVFKLLIIDSIMALFR----VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFI 268

Query: 200 INQMRMKI---GVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQT 250
            NQM             P+   GG+ L   S+ R+ +R      R+  I D   +  N+ 
Sbjct: 269 TNQMTADPGAGMTFQADPKKPIGGHILAHASTTRISLRKGRGEMRIAKIFDSPDMPENEA 328

Query: 251 RVKVVKNKMAS 261
              +    +  
Sbjct: 329 TFAISAGGVTD 339


>gi|225680556|gb|EEH18840.1| DNA repair and recombination protein radA [Paracoccidioides
           brasiliensis Pb03]
          Length = 337

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 55/259 (21%), Positives = 95/259 (36%), Gaps = 35/259 (13%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG Q    + +  +S+GS   D  L  GGF    I E+YG    GKT L+      +Q
Sbjct: 86  MELGHQ---RKRVVKISTGSKQFDSILA-GGFQSMSISEVYGEFRCGKTQLSHTMSVVAQ 141

Query: 93  ------KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITD 138
                    G  A++D E         ++           L+N+  ++    E  LE+ +
Sbjct: 142 LPKDMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELLN 201

Query: 139 MLVRSG---AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
            L +        +++IDS+     R +  G         + + ++Q L KL         
Sbjct: 202 TLSKEFAGSEYRLLIIDSIMNCF-RVDYCGRGE---LADRQQKLNQFLMKLAHMAEEFNV 257

Query: 196 ILVFINQMRMKIGVM----FGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
            ++  NQ++   G              GG+ L   S+ R+ +R      RV  I+D    
Sbjct: 258 CVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTRVLLRKGRGEERVAKIQDSPDC 317

Query: 246 TGNQTRVKVVKNKMASPFK 264
              +    +    +  P K
Sbjct: 318 PEREATYVITNGGINDPDK 336


>gi|320032013|gb|EFW13969.1| meiotic recombination protein dmc1 [Coccidioides posadasii str.
           Silveira]
          Length = 338

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 58/259 (22%), Positives = 97/259 (37%), Gaps = 35/259 (13%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG Q    + +  +S+GS   D  L  GGF    I E+YG    GKT L+      +Q
Sbjct: 87  MELGHQ---RKRVVRISTGSKQFDAILN-GGFQSMSISEVYGEFRCGKTQLSHTMSVVAQ 142

Query: 93  ------KTGGTCAFVDAEHALDSIYA----RKLGVD----LKNLLISQPDTGEQALEITD 138
                    G  A++D E             + GVD    L+N+  ++    E  LE+ +
Sbjct: 143 LPRSMGGAEGKVAYIDTEGTFRPERVGQIAERFGVDPDSSLENIAYARALNSEHQLELLN 202

Query: 139 MLVRSG---AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
            L +        +++IDS+     R +  G         + + ++Q L KL         
Sbjct: 203 TLSKEFAGGEYRLLIIDSIMNCF-RVDYCGRGE---LADRQQKLNQFLMKLAHMAEEFNV 258

Query: 196 ILVFINQMRMKIGVM----FGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
            ++  NQ++   G              GG+ L   S+ R+ +R      RV  I+D    
Sbjct: 259 CVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTRVLLRKGRGEERVAKIQDSPDC 318

Query: 246 TGNQTRVKVVKNKMASPFK 264
              +    +    +  P K
Sbjct: 319 PEREATYIITNGGINDPEK 337


>gi|322819187|gb|EFZ26388.1| meiotic recombination protein DMC1, putative [Trypanosoma cruzi]
          Length = 351

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 89/244 (36%), Gaps = 31/244 (12%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            +  +++GS  LD  LG GG     I E +G   +GKT +A       Q         G 
Sbjct: 110 KVTRMTTGSTALDQLLG-GGIESMSITEAFGEFRTGKTQIAHTLCVTCQLPTSMGGGNGK 168

Query: 98  CAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGAVD-- 147
             +VD E        + +           L N+L+++  T E  + +  M+    A D  
Sbjct: 169 VIYVDTESTFRPERIKPIAARFGLDADAVLNNILVARAYTHEHQMHLLSMVAAKMAEDQF 228

Query: 148 -IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++V+DS+ AL          G      + + +++ +  L          +   NQ+   
Sbjct: 229 GLLVVDSITALFR----VDFSGRGELAERQQKLAKMMSHLIKLAEEFNVAVYITNQVVAD 284

Query: 207 I---GVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKN 257
                +    P+   GG+ L   S+ RL +R      R+  I D  S+   +    + + 
Sbjct: 285 PGGASMFVADPKKPVGGHILAHASTTRLSLRKGRGDQRICKIYDSPSLPEVECVFSISEQ 344

Query: 258 KMAS 261
            +  
Sbjct: 345 GIVD 348


>gi|224107947|ref|XP_002314664.1| predicted protein [Populus trichocarpa]
 gi|222863704|gb|EEF00835.1| predicted protein [Populus trichocarpa]
          Length = 352

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/240 (21%), Positives = 85/240 (35%), Gaps = 33/240 (13%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
            + +  +++GS  LD  LG GG     I E +G   SGKT LA      +Q         
Sbjct: 101 RKSVIRITTGSQALDELLG-GGIETSAITEAFGEFRSGKTQLAHTLCVSTQLPTQMHGGN 159

Query: 96  GTCAFVDAEHALDSIYA----RKLGVD----LKNLLISQPDTGEQALEI---TDMLVRSG 144
           G  A++D E             + G+D    L N++ ++  T E    +       +   
Sbjct: 160 GKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEE 219

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DSV AL          G      + + ++Q L +L          +   NQ+ 
Sbjct: 220 PYRLLIVDSVIALFR----VDFTGRGELAERQQKLAQMLSRLIKIAEEFNVAVYMTNQVI 275

Query: 205 MKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
              G       P+   GG+ L   +++RL  R+           G Q   KV        
Sbjct: 276 ADPGGGMFISDPKKPAGGHVLAHAATIRLMFRKGK---------GEQRVCKVFDAPNLPE 326


>gi|198420224|ref|XP_002126934.1| PREDICTED: similar to RAD51 homolog isoform 1 [Ciona intestinalis]
          Length = 338

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 88/257 (34%), Gaps = 34/257 (13%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              I  +++GS  LD  L  GG   G I EI+G   +GKT +     A  Q         
Sbjct: 95  RSEIIQITTGSKELDKLL-QGGIETGSITEIFGEFRTGKTQICHTIAATCQLPIEQGGGE 153

Query: 96  GTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQA---LEITDMLVRSG 144
           G C ++D E          +           L N+  ++    +     L     ++   
Sbjct: 154 GKCLYIDTEGTFRPERLLAVAERYGLNGADVLDNVAYARAYNTDHQSQLLIQAAAMMSET 213

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              +IV+DS  AL  R +  G    S   M    + + LR L          ++  NQ+ 
Sbjct: 214 RYAVIVVDSATALY-RTDYSGRGELSARQMH---LGRFLRTLLRLADEFGVAVIITNQVV 269

Query: 205 MKIGVMFG---SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
            ++         P+   GG+ +   S+ RL +R+           G+    K+  +    
Sbjct: 270 AQVDGGAMFCADPKKPIGGHIMAHASTTRLYLRKGR---------GDTRICKIYDSPCLP 320

Query: 262 PFKQVEFDIMYGEGISF 278
             + +      G G + 
Sbjct: 321 ESEVMFCINSDGIGDTK 337


>gi|297374126|emb|CBL88079.1| recombinase A [Marichromatium sp. JA439]
          Length = 101

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 79/101 (78%), Positives = 95/101 (94%)

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
           KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAALTP+AEIEG+MG+S  G
Sbjct: 1   KLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAALTPKAEIEGEMGDSHVG 60

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           +QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMFGSP
Sbjct: 61  LQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSP 101


>gi|160347295|gb|ABX26205.1| RecA [Alcaligenaceae bacterium KB-2007]
          Length = 71

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/71 (69%), Positives = 59/71 (83%)

Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
           +SVRLDIRR+GSIK  + + G++TRVKVVKNK+A PFKQ EF IMYG GIS  GE+IDLG
Sbjct: 1   ASVRLDIRRIGSIKKGEEVVGSETRVKVVKNKVAPPFKQAEFHIMYGTGISRKGEIIDLG 60

Query: 287 VKASIVDKSGA 297
           V  ++VDKSGA
Sbjct: 61  VPHNVVDKSGA 71


>gi|51247475|pdb|1SZP|A Chain A, A Crystal Structure Of The Rad51 Filament
 gi|51247476|pdb|1SZP|B Chain B, A Crystal Structure Of The Rad51 Filament
 gi|51247477|pdb|1SZP|C Chain C, A Crystal Structure Of The Rad51 Filament
 gi|51247478|pdb|1SZP|D Chain D, A Crystal Structure Of The Rad51 Filament
 gi|51247479|pdb|1SZP|E Chain E, A Crystal Structure Of The Rad51 Filament
 gi|51247480|pdb|1SZP|F Chain F, A Crystal Structure Of The Rad51 Filament
          Length = 321

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 94/244 (38%), Gaps = 25/244 (10%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  LG GG   G I E++G   +GK+ L        Q         G C +
Sbjct: 80  CLTTGSKNLDTLLG-GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLY 138

Query: 101 VDAEHALDSIY----ARKLGVDLK----NLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     +     A++ G+D      N+  ++    +  L +      ++      +I
Sbjct: 139 IDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLI 198

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DSV AL  R +  G    S   M      +AL++L      +  +   +         
Sbjct: 199 VVDSVMALY-RTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMA 257

Query: 210 MFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMASPF 263
               P+  TGGN +   S+ RL  +      R+  + D   +   +    + ++ +  P 
Sbjct: 258 FNPDPKKPTGGNIMAHSSTTRLGFKKGKGCQRLCKVVDSPCLPEAECVFAIYEDGVGDPR 317

Query: 264 KQVE 267
           ++ E
Sbjct: 318 EEDE 321


>gi|11994717|dbj|BAB03033.1| AtDMC1 (meiotic recombination protein)-like protein [Arabidopsis
           thaliana]
          Length = 332

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 101/276 (36%), Gaps = 39/276 (14%)

Query: 17  EAALSQI----QR--VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           EA + +I    ++   +G    M         + +  +++G   LD  LG GG     I 
Sbjct: 62  EAKVDKICEAAEKIVNFG---YMTGSDALIKRKSVVKITTGCQALDDLLG-GGIETSAIT 117

Query: 71  EIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYA----RKLGVD-- 118
           E +G   SGKT LA      +Q         G  A++D E             + G+D  
Sbjct: 118 EAFGEFRSGKTQLAHTLCVTTQLPTNMKGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPG 177

Query: 119 --LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
             L N++ ++  T E    +       +      I+++DS+ AL          G     
Sbjct: 178 AVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRILIVDSIIALFR----VDFTGRGELA 233

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRL 231
            + + ++Q L +L          +   NQ+    G       P+   GG+ L   +++RL
Sbjct: 234 DRQQKLAQMLSRLIKIAEEFNVAVYMTNQVIADPGGGMFISDPKKPAGGHVLAHAATIRL 293

Query: 232 DIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
             R      RV  + D  ++   +   ++ +  +A 
Sbjct: 294 LFRKGKGDTRVCKVYDAPNLAEAEASFQITQGGIAD 329


>gi|310893912|gb|ADP37893.1| RecA [Streptococcus pneumoniae]
 gi|310893914|gb|ADP37894.1| RecA [Streptococcus pseudopneumoniae]
 gi|310893916|gb|ADP37895.1| RecA [Streptococcus mitis]
          Length = 104

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 65/104 (62%), Positives = 86/104 (82%)

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+G
Sbjct: 1   ALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDG 60

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           D+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GV
Sbjct: 61  DIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGV 104


>gi|256071033|ref|XP_002571846.1| DNA repair protein RAD51 [Schistosoma mansoni]
 gi|238656994|emb|CAZ28076.1| DNA repair protein RAD51, putative [Schistosoma mansoni]
          Length = 338

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/283 (18%), Positives = 100/283 (35%), Gaps = 36/283 (12%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K ++     K +EAA   +   +                 I  +++GS  LD  L  GG 
Sbjct: 63  KGISEAKADKIIEAAQKLVPFGFTTAT-----EFHQKRSEIIQLTTGSKELDKLL-QGGI 116

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKL--- 115
             G I E++G   +GKT +        Q         G C ++D E          +   
Sbjct: 117 ETGSITELFGEFRTGKTQICHTLAVTCQLPIDMGGGEGKCLYIDTEGTFRPERLLAVAER 176

Query: 116 -----GVDLKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
                   L N+  ++    +  +E+      ++      ++++DS  AL  R +  G  
Sbjct: 177 YGLSGSDVLDNVAYARAYNTDHQMELLINAAAMMSESRYALLIVDSATALY-RTDYSGRG 235

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG---VMFGSPETTTGGNALK 224
             S   M    +++ LR L          +V  NQ+  ++    +    P+   GGN + 
Sbjct: 236 ELSARQMH---LARFLRTLLRLADEFGVAVVITNQVVAQVDGAAMFSADPKKPIGGNIMG 292

Query: 225 FYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
             S+ RL +R      R+  I D   +   +    ++ + +  
Sbjct: 293 HASTTRLYLRKGRGETRICKIYDSPCLPEAEAMYAILADGIGD 335


>gi|66822135|ref|XP_644422.1| hypothetical protein DDB_G0273611 [Dictyostelium discoideum AX4]
 gi|66822947|ref|XP_644828.1| hypothetical protein DDB_G0273139 [Dictyostelium discoideum AX4]
 gi|60472545|gb|EAL70496.1| hypothetical protein DDB_G0273611 [Dictyostelium discoideum AX4]
 gi|60472838|gb|EAL70787.1| hypothetical protein DDB_G0273139 [Dictyostelium discoideum AX4]
          Length = 351

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 92/253 (36%), Gaps = 34/253 (13%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG- 95
                   I  +++GS   D  L  GG   G I EI+G   +GKT +  HT+  + + G 
Sbjct: 101 DINKARAEIIQITTGSKEFDSLL-DGGIESGSITEIFGEFRTGKTQIC-HTLCVTCQLGY 158

Query: 96  ------GTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TD 138
                 G   ++D E          +           L N+  ++    +  LE+     
Sbjct: 159 SQGGGEGRALYIDTEGTFRPERLLAIAERYNLNGEHVLDNVSYARAYNSDHQLELLVQAS 218

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            ++      ++++DS  AL          G      + + +++ LR L          +V
Sbjct: 219 AMMSESRYALLIVDSATALYR----TDYAGRGELADRQKHLARFLRTLQRLADEFGVAVV 274

Query: 199 FINQMRMKIG----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGN 248
             NQ+   +     +    P+   GG+ +   S+ RL +R      R+  I D  S+  +
Sbjct: 275 ITNQVVASVDGAGGMFNPDPKKPIGGHIMAHSSTTRLSLRKGKGEMRICKIYDSPSLPES 334

Query: 249 QTRVKVVKNKMAS 261
           +    +  + ++ 
Sbjct: 335 EKPFGIYSDGISD 347


>gi|222154113|gb|ACM47236.1| disrupted meiotic cDNA 1 protein [Triticum aestivum]
          Length = 344

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 55/272 (20%), Positives = 100/272 (36%), Gaps = 35/272 (12%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K  EAA   + + +  G+           + +  +++GS  LD  LG GG     I E 
Sbjct: 78  DKICEAAEKLLSQGFMTGS-----DLLIKRKSVVRITTGSQALDELLG-GGIETLCITEA 131

Query: 73  YGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYA----RKLGVD---- 118
           +G   SGKT LA      +Q         G  A++  E             + G+D    
Sbjct: 132 FGEFRSGKTQLAHTLCVSTQLPLHMHGGNGKVAYIGTEGTFRPERIVPIAERFGMDANAV 191

Query: 119 LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           L N++ ++  T E    +       +      ++++DSV AL          G      +
Sbjct: 192 LDNIIYARAYTYEHQYNLLLGLVAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAER 247

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDI 233
            + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +
Sbjct: 248 QQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLML 307

Query: 234 R------RVGSIKDKDSITGNQTRVKVVKNKM 259
           R      R+  I D  ++   +   ++    +
Sbjct: 308 RKGKGEQRICKIFDAPNLPEGEAVFQITTGGL 339


>gi|63852088|dbj|BAD98461.1| RecA homolog Rad51 [Oreochromis niloticus]
          Length = 336

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 84/244 (34%), Gaps = 31/244 (12%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            I  +S+GS  LD  L  GG   G I E++G   +GKT L        Q         G 
Sbjct: 95  EIIQISTGSKELDKLL-QGGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGK 153

Query: 98  CAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQA---LEITDMLVRSGAV 146
             ++D E          +           L N+  ++    +     L     ++     
Sbjct: 154 AMYIDTEGTFRPERLLAVAERYGLVGSDVLDNVAYARAFNTDHQTQLLYQASAMMAESRY 213

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++++DS  AL  R +  G    S        + + LR L          +V  NQ+  +
Sbjct: 214 ALLIVDSATALY-RTDYSGRGELSARQGH---LGRFLRMLLRLADEFGVAVVITNQVVAQ 269

Query: 207 IG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKN 257
           +    +    P+   GGN L   S+ RL +R      R+  I D   +   +    +  +
Sbjct: 270 VDGAAMFSADPKKPIGGNILAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINAD 329

Query: 258 KMAS 261
            +  
Sbjct: 330 GVGD 333


>gi|70939108|ref|XP_740140.1| Rad51 [Plasmodium chabaudi chabaudi]
 gi|56517647|emb|CAH76360.1| Rad51 homolog, putative [Plasmodium chabaudi chabaudi]
          Length = 324

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 71/220 (32%), Gaps = 25/220 (11%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-- 94
                 + +   ++GS  LD  L  GG   G I E++G   +GK+ L        Q    
Sbjct: 100 DYHDARQNLIKFTTGSKQLDALL-KGGIETGGITELFGEFRTGKSQLCHTLAITCQLPIE 158

Query: 95  ----GGTCAFVDAEHALDSIYARKLGVDLKNLLISQ-----------PDTGEQALEITDM 139
                G C ++D E          +                       D   + L     
Sbjct: 159 QSGGEGKCLWIDTEGTFRPERIVAIAKRYGLHPTDCLNNIAYAKAYNCDHQTELLIDASA 218

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           ++      ++++DS  AL  R+E  G    +          + LR L          ++ 
Sbjct: 219 MMADTRFALLIVDSATALY-RSEYTGRGELANRQSHLC---RFLRGLQRIADIYGVAVII 274

Query: 200 INQMRMKIGVMFGS---PETTTGGNALKFYSSVRLDIRRV 236
            NQ+  K+  M       +   GGN +   S  RL +R+ 
Sbjct: 275 TNQVVAKVDAMSMFGGHEKLPIGGNIIAHASQTRLYLRKG 314


>gi|300710264|ref|YP_003736078.1| DNA repair and recombination protein RadB [Halalkalicoccus jeotgali
           B3]
 gi|299123947|gb|ADJ14286.1| DNA repair and recombination protein RadB [Halalkalicoccus jeotgali
           B3]
          Length = 247

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 88/232 (37%), Gaps = 24/232 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + +S G   +D  LG GG  +G + ++YGP ++GKT +AL    +    G   A++D E 
Sbjct: 17  DAISVGCPPIDDLLG-GGVERGTVTQVYGPPAAGKTNVALCAAVECAAAGERVAYIDTEG 75

Query: 106 ALDSIYARKL----GVDLKNLLISQPDTGEQALEITDMLVRS-----GAVDIIVIDSVAA 156
                + R L      D++ L      +     E  +  VR        V +IV+DS   
Sbjct: 76  LSPDRFERLLRAHGEADVETLSSRIVVSEAHTFEEQEQAVRDAEDLAEEVSLIVLDSATG 135

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPET 216
                       +   G   R +++ +  L +   +    ++  NQ+             
Sbjct: 136 FYRL----QRTEDEREGDALRSVARQVTHLLALARKHDLAVLLTNQVFSDPDSETVR--- 188

Query: 217 TTGGNALKFYSS--VRLDIRRVGS-----IKDKDSITGNQTRVKVVKNKMAS 261
             GGN L+ ++   +R+D  R G       K +    G   + ++    + S
Sbjct: 189 ALGGNTLEHWTGTVMRIDRFRGGKRRATLEKHRSKPAGESVQFRITDEGLES 240


>gi|282467|pir||A42721 recombination protein recA - Clostridium acetobutylicum  (fragment)
 gi|144901|gb|AAA23273.1| recombination and repair protein [Clostridium acetobutylicum]
          Length = 104

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 67/102 (65%), Positives = 88/102 (86%)

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
            YA+KLGVD+ +L+ISQPDTGEQ LEI + LVRSGA+D++V+DSVAAL P+AEIEG+MG+
Sbjct: 1   SYAQKLGVDVDSLIISQPDTGEQGLEIAEALVRSGAIDVLVVDSVAALVPKAEIEGEMGD 60

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           S  G+QARLMSQALRKL  +I+++ C+ +FINQ+R K+G MF
Sbjct: 61  SHIGLQARLMSQALRKLAGTINKTNCVAIFINQLREKLGFMF 102


>gi|71659624|ref|XP_821533.1| meiotic recombination protein DMC1 [Trypanosoma cruzi strain CL
           Brener]
 gi|70886915|gb|EAN99682.1| meiotic recombination protein DMC1, putative [Trypanosoma cruzi]
          Length = 351

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 89/244 (36%), Gaps = 31/244 (12%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            +  +++GS  LD  LG GG     I E +G   +GKT +A       Q         G 
Sbjct: 110 KVTRMTTGSTALDQLLG-GGIESMSITEAFGEFRTGKTQIAHTLCVTCQLPTSMGGGNGK 168

Query: 98  CAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGAVD-- 147
             +VD E        + +           L N+L+++  T E  + +  M+    A D  
Sbjct: 169 VIYVDTESTFRPERIKPIAARFGLDADAVLNNILVARAYTHEHQMHLLSMVAAKMAEDQF 228

Query: 148 -IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++V+DS+ AL          G      + + +++ +  L          +   NQ+   
Sbjct: 229 GLLVVDSITALFR----VDFSGRGELAERQQKLAKMMSHLIKLAEEFNVAVYITNQVVAD 284

Query: 207 I---GVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKN 257
                +    P+   GG+ L   S+ RL +R      RV  I D  S+   +    + + 
Sbjct: 285 PGGASMFVADPKKPVGGHILAHASTTRLSLRKGRGDQRVCKIYDSPSLPEVECVFSISEQ 344

Query: 258 KMAS 261
            +  
Sbjct: 345 GIVD 348


>gi|327400087|ref|YP_004340926.1| DNA repair and recombination protein radA [Archaeoglobus veneficus
           SNP6]
 gi|327315595|gb|AEA46211.1| DNA repair and recombination protein radA [Archaeoglobus veneficus
           SNP6]
          Length = 328

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 92/250 (36%), Gaps = 33/250 (13%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
                I  +++GS  LD  LG GG     I E++G   SGKT +        Q       
Sbjct: 83  ERRRRIGKITTGSKALDELLG-GGVETQSITELFGEFGSGKTQICHQLAVNVQLPRDLGG 141

Query: 94  TGGTCAFVDAEHALDSIYARKLGV--------DLKNLLISQPDTGEQALEITD------- 138
             G+   +D E+        ++           L+N+ ++Q       + + D       
Sbjct: 142 LEGSVIVIDTENTFRPERIIQMAEAKGLDPEEVLRNIYVAQAYNSNHQMLLVDNAKELAN 201

Query: 139 -MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
            +      V ++++DS+ A   RAE  G         + + +++ L  L          +
Sbjct: 202 KLKKEGKQVKLLIVDSLMAHF-RAEYVGR---GTLADRQQKLNKHLHDLMRFGEIFNAAI 257

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTR 251
           V  NQ++ K    FG P    GG+ +   ++ R+ +R      RV  + D   +   +  
Sbjct: 258 VVTNQVQAKPDTFFGDPTKPVGGHIVAHTATFRIYLRKSKGELRVARLIDSPHLPEGEAV 317

Query: 252 VKVVKNKMAS 261
            KV +  +  
Sbjct: 318 FKVTERGIED 327


>gi|47086005|ref|NP_998371.1| DNA repair protein RAD51 homolog 1 [Danio rerio]
 gi|38571810|gb|AAH62849.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [Danio rerio]
          Length = 338

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 81/244 (33%), Gaps = 31/244 (12%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            I  +S+GS  LD  L  GG   G I E++G   +GKT L        Q         G 
Sbjct: 97  EIIQISTGSKELDKLL-QGGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGK 155

Query: 98  CAFVDAEHALDSIYARKLGVDLKNL-----------LISQPDTGEQALEITDMLVRSGAV 146
             ++D E          +      +                D   Q L     ++     
Sbjct: 156 AMYIDTEGTFRPERLLAVAERYGLVGSDVLDNVAYARAFNTDHQTQLLYQASAMMTESRY 215

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++++DS  AL  R +  G    S        + + LR L          +V  NQ+  +
Sbjct: 216 ALLIVDSATALY-RTDYSGRGELSARQGH---LGRFLRMLLRLADEFGVAVVITNQVVAQ 271

Query: 207 IG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKN 257
           +    +    P+   GGN L   S+ RL +R      R+  I D   +   +    +  +
Sbjct: 272 VDGAAMFSADPKKPIGGNILAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINAD 331

Query: 258 KMAS 261
            +  
Sbjct: 332 GVGD 335


>gi|71663769|ref|XP_818873.1| meiotic recombination protein DMC1 [Trypanosoma cruzi strain CL
           Brener]
 gi|70884148|gb|EAN97022.1| meiotic recombination protein DMC1, putative [Trypanosoma cruzi]
          Length = 351

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 89/244 (36%), Gaps = 31/244 (12%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            +  +++GS  LD  LG GG     I E +G   +GKT +A       Q         G 
Sbjct: 110 KVTRMTTGSTALDQLLG-GGIESMSITEAFGEFRTGKTQIAHTLCVTCQLPTSMGGGNGK 168

Query: 98  CAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGAVD-- 147
             +VD E        + +           L N+L+++  T E  + +  M+    A D  
Sbjct: 169 VIYVDTESTFRPERIKPIAARFGLDADAVLNNILVARAYTHEHQMHLLSMVAAKMAEDQF 228

Query: 148 -IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++V+DS+ AL          G      + + +++ +  L          +   NQ+   
Sbjct: 229 GLLVVDSITALFR----VDFSGRGELAERQQKLAKMMSHLIKLAEEFNVAVYITNQVVAD 284

Query: 207 I---GVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKN 257
                +    P+   GG+ L   S+ RL +R      RV  I D  S+   +    + + 
Sbjct: 285 PGGASMFVADPKKPVGGHILAHASTTRLSLRKGRGDQRVCKIYDSPSLPEVECVFSISEQ 344

Query: 258 KMAS 261
            +  
Sbjct: 345 GIVD 348


>gi|300175731|emb|CBK21274.2| unnamed protein product [Blastocystis hominis]
          Length = 292

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 91/248 (36%), Gaps = 33/248 (13%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
            + + +  +++GS  LD  LG GG     I EI+G   +GKT LA      +Q       
Sbjct: 45  QLRQRVIKITTGSSDLDTLLG-GGIETMSITEIFGEFRTGKTQLAHTLCVTAQLPSEMHG 103

Query: 94  TGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA 145
             G   F+D E         ++           L N+L+++  T EQ +++         
Sbjct: 104 ANGKVIFLDTEGTFRPQRVVEIAGRYGLNGDEVLDNILLARAYTHEQQMDVITAAAAKIV 163

Query: 146 VD-----IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            D     ++V+DS+ AL          G      + + + + L  L          +V I
Sbjct: 164 EDNSPYHLLVVDSITALFR----VDYSGRGELAERQQKLGRHLSALKKLAEEFNVAVVII 219

Query: 201 NQMRMKIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTR 251
           NQ+    G   +     +   GGN +   S+ RL  +      R+  + D   +  N+  
Sbjct: 220 NQVTADPGAAAMFVKDTKKPIGGNIIAHASTTRLYFKKGKGEQRICKVYDSPDLAENEAT 279

Query: 252 VKVVKNKM 259
             +    +
Sbjct: 280 FAIGPQGV 287


>gi|310893918|gb|ADP37896.1| RecA [Streptococcus oralis]
 gi|310893920|gb|ADP37897.1| RecA [Streptococcus infantis]
 gi|310893922|gb|ADP37898.1| RecA [Streptococcus oligofermentans]
          Length = 104

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 66/104 (63%), Positives = 86/104 (82%)

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++VIDSVAAL PRAEI+G
Sbjct: 1   ALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDG 60

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           D+G+S  G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GV
Sbjct: 61  DIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGV 104


>gi|71745272|ref|XP_827266.1| DNA recombination/repair protein RAD51/Dmc1 [Trypanosoma brucei]
 gi|70831431|gb|EAN76936.1| RAD51/dmc1 protein, putative [Trypanosoma brucei]
 gi|261331479|emb|CBH14473.1| RAD51/dmc1 protein, putative [Trypanosoma brucei gambiense DAL972]
          Length = 349

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 91/243 (37%), Gaps = 31/243 (12%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTC 98
           +  V++GS  LD  LG GG     I E +G   +GKT +A       Q         G  
Sbjct: 109 VTRVTTGSTALDQLLG-GGIESMSITEAFGEFRTGKTQIAHTLCVTCQLPISMGGGNGKA 167

Query: 99  AFVDAEHALDSIYA----RKLGVDLK----NLLISQPDTGEQALEITDMLVRSGAVD--- 147
            +VD E             + G+D++    N+L+++  T E  + +  M+      D   
Sbjct: 168 IYVDTEATFRPERIKPIAERFGLDVEAVLGNILVARAYTHEHQMHLLSMVAAKMVEDQFS 227

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++V+DSV AL          G      + + +++ L  +          +   NQ+    
Sbjct: 228 LLVVDSVTALFR----VDFSGRGELAERQQKLAKMLSNMIKLAEEYNVAVYITNQVVADP 283

Query: 208 ---GVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
               +    P+   GG+ L   S+ RL +R      RV  I D  S+   +    + +  
Sbjct: 284 GGASMFVADPKKPIGGHILAHASTTRLSLRKGRGDQRVCKIYDSPSLPEVECVFSISEQG 343

Query: 259 MAS 261
           +  
Sbjct: 344 IVD 346


>gi|166714608|gb|ABY88034.1| RecA [Stenotrophomonas sp. ICB91]
          Length = 87

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 61/86 (70%), Positives = 73/86 (84%), Gaps = 2/86 (2%)

Query: 197 LVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
           ++FINQ+R+KIGVM    SPETTTGGNALKFY+SVRLDIRR+G+IK  D I GNQT++KV
Sbjct: 2   VIFINQLRIKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIGNQTKIKV 61

Query: 255 VKNKMASPFKQVEFDIMYGEGISFFG 280
           VKNK+A PFKQV  +I+YGEGIS  G
Sbjct: 62  VKNKLAPPFKQVITEILYGEGISREG 87


>gi|321265185|ref|XP_003197309.1| meiotic recombination-related protein [Cryptococcus gattii WM276]
 gi|317463788|gb|ADV25522.1| Meiotic recombination-related protein, putative [Cryptococcus
           gattii WM276]
          Length = 308

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 90/252 (35%), Gaps = 33/252 (13%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG--- 95
                 +  +++GS  +D  LG GG     I E++G   +GKT L       +Q      
Sbjct: 61  ADRRANVVYITTGSKSVDAMLG-GGIATQSITEVFGEYRTGKTQLCHTLCVSTQLPEDQG 119

Query: 96  ---GTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQAL----EITDML 140
              G  A++D E        R +         + L N+L ++  + E       ++    
Sbjct: 120 GGSGKVAYIDTEGTFRPDRVRAVADRFGVDSNMALDNVLCARAWSSEHQCDLLVDLAIRF 179

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           V   A  ++++DS+  L  +       G      + + ++Q L +L          +V  
Sbjct: 180 VEERAYKLLIVDSIMNLFRQ----DYSGRGELSERQQKLNQFLARLQKLAEEFNIAVVLT 235

Query: 201 NQMRMKIG----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQT 250
           NQ++   G        S     GG+ L   S+ R+ +R      R+  ++D   +   + 
Sbjct: 236 NQVQADPGAAAMFAAASSAKPVGGHILAHASATRIALRKGRGDERIAKLQDSPDMPEGEA 295

Query: 251 RVKVVKNKMASP 262
              +       P
Sbjct: 296 TYTLRTGGWEDP 307


>gi|116754195|ref|YP_843313.1| DNA repair and recombination protein RadA [Methanosaeta thermophila
           PT]
 gi|116665646|gb|ABK14673.1| DNA repair and recombination protein RadA [Methanosaeta thermophila
           PT]
          Length = 322

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 86/221 (38%), Gaps = 33/221 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +++GS   D  LG GG     IVE+YG   SGKT +A       Q         G+   +
Sbjct: 80  ITTGSRNFDELLG-GGMETQAIVELYGEFGSGKTQVAHQLAVNVQLPPELGGLNGSAIII 138

Query: 102 DAEHALDSIYARKLGVDL--------------KNLLISQPDTGEQALEITDMLVR----- 142
           D E+        ++ + L              KN+ +++       + + +  +      
Sbjct: 139 DTENTFRPERISQMVMGLRAIDDREWRPEDFLKNIHVARAYNSNHQILLAESAMELAESL 198

Query: 143 ---SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
                 V ++++DSV A   RAE  G         + + +++ L  L      +  +++ 
Sbjct: 199 RETEHPVRLLIVDSVTAHF-RAEYVGR---GTLADRQQKLNKHLHDLMRFADLNNALILV 254

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
            NQ+  K    FG P    GG+ L   ++ R+ +R+    K
Sbjct: 255 TNQVMAKPDTFFGDPTKPVGGHVLGHTATFRVYLRKSKGDK 295


>gi|320170723|gb|EFW47622.1| Rad51 protein [Capsaspora owczarzaki ATCC 30864]
          Length = 337

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 89/246 (36%), Gaps = 31/246 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              +  ++SGS  LD  L  GGF  G I EI+G   +GKT +        Q         
Sbjct: 94  RSDLVTLTSGSKELDKLL-QGGFETGAITEIFGEFRTGKTQICHTLAVTCQLPTSQGGGE 152

Query: 96  GTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSG 144
           G C ++D E                      L N+  ++    +  L +      ++   
Sbjct: 153 GKCLYIDTEGTFRPERLLAAAERYGLSGPDVLDNVAYARAYNTDHQLALLMQASAMMAES 212

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  AL  R +  G    S   M    +++ +R L          +V  NQ+ 
Sbjct: 213 RYALLIVDSATALY-RTDYSGRGELSARQMH---LAKFMRSLLRLADEFGIAVVVTNQVV 268

Query: 205 MKIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
            ++    +    P+   GGN +   S+ RL +R      R+  I D  S+   +    + 
Sbjct: 269 AQVDGGAMFAADPKKPIGGNIMAHASTTRLYLRKGRAETRICKIYDSPSLPEAEAVFAIN 328

Query: 256 KNKMAS 261
            + +  
Sbjct: 329 ADGIGD 334


>gi|55251281|emb|CAH69022.1| novel protein (zgc:77754) [Danio rerio]
          Length = 340

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 81/244 (33%), Gaps = 31/244 (12%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            I  +S+GS  LD  L  GG   G I E++G   +GKT L        Q         G 
Sbjct: 99  EIIQISTGSKELDKLL-QGGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGK 157

Query: 98  CAFVDAEHALDSIYARKLGVDLKNL-----------LISQPDTGEQALEITDMLVRSGAV 146
             ++D E          +      +                D   Q L     ++     
Sbjct: 158 AMYIDTEGTFRPERLLAVAERYGLVGSDVLDNVAYARAFNTDHQTQLLYQASAMMTESRY 217

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++++DS  AL  R +  G    S        + + LR L          +V  NQ+  +
Sbjct: 218 ALLIVDSATALY-RTDYSGRGELSARQGH---LGRFLRMLLRLADEFGVAVVITNQVVAQ 273

Query: 207 IG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKN 257
           +    +    P+   GGN L   S+ RL +R      R+  I D   +   +    +  +
Sbjct: 274 VDGAAMFSADPKKPIGGNILAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINAD 333

Query: 258 KMAS 261
            +  
Sbjct: 334 GVGD 337


>gi|323424256|emb|CBZ39275.1| recombinase A [Thiorhodococcus sp. JA395]
          Length = 101

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 76/101 (75%), Positives = 90/101 (89%)

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
           +    + +LL+SQPDTGEQALEITDMLVRSGAVDI+V+DSVAALTP+AEIEG+MG+S  G
Sbjct: 1   EARRHMNDLLVSQPDTGEQALEITDMLVRSGAVDIVVVDSVAALTPKAEIEGEMGDSHVG 60

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           +QARLMSQALRKLT +I RS C ++FINQ+RMKIGVMFGSP
Sbjct: 61  LQARLMSQALRKLTGNIKRSNCCVIFINQIRMKIGVMFGSP 101


>gi|254166621|ref|ZP_04873475.1| DNA repair and recombination protein RadB [Aciduliprofundum boonei
           T469]
 gi|254168908|ref|ZP_04875748.1| DNA repair and recombination protein RadB [Aciduliprofundum boonei
           T469]
 gi|197622172|gb|EDY34747.1| DNA repair and recombination protein RadB [Aciduliprofundum boonei
           T469]
 gi|197624231|gb|EDY36792.1| DNA repair and recombination protein RadB [Aciduliprofundum boonei
           T469]
          Length = 234

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 92/236 (38%), Gaps = 18/236 (7%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           F  ++ + SG   +D  L  GGF +G I E+YG   SGKT + L T     K G    ++
Sbjct: 5   FPYVDKIKSGCESIDSLLN-GGFERGCITELYGEAGSGKTNICLSTAINVAKEGHYVIYI 63

Query: 102 DAEHALDSIYARKLGVD--LKNLLISQPDTGEQALEITDMLVR---SGAVDIIVIDSVAA 156
           D E      +++  G +   K +L  +     Q  EI +  +         I++I     
Sbjct: 64  DTEGISMERFSQLGGNEDIAKRILFYKVYKFSQQAEIIERAINLVEKRNDIILLIVDSMT 123

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPET 216
              RAE    + E L   +   ++  L  L S   +    ++  NQ+ M           
Sbjct: 124 EFYRAE--RGVEEDLSAKKRSSLAWQLSILNSIARKKNIAVIITNQVYMDTTT---KELR 178

Query: 217 TTGGNALKFYSSVRLDIRRVGS-------IKDKDSITGNQTRVKVVKNKMASPFKQ 265
             GG+ L   +   + +R++G+       IK +    G + R  +  + +    K+
Sbjct: 179 PIGGHTLHHNAKTIIFLRKIGNGYREALLIKHRSLPEGIKARFIIGSDGLYPEEKE 234


>gi|14595977|gb|AAK68858.1| DNA repair protein [Nosema bombycis]
          Length = 333

 Score = 84.5 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 89/250 (35%), Gaps = 32/250 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTG 95
            + +  +S+GS  LD  L  GG   G I EI+G   +GKT +        Q         
Sbjct: 89  RQEVVYLSTGSSELDKLLN-GGIESGSITEIFGEFRTGKTQICHTVAVTCQLPPEQGGAN 147

Query: 96  GTCAFVDAEHALDSIYA----RKLGVD----LKNLLISQPDTGEQA---LEITDMLVRSG 144
           G   ++D E    S        + G+D    L N+  ++    +     L     L+   
Sbjct: 148 GKALYIDTEGTFRSERFFPIAERYGLDPTEVLDNISYARAYNSDHQSQLLIQASSLMSQN 207

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              +++IDS  AL          G    G +   +++ LR L +        ++  NQ+ 
Sbjct: 208 KYAVLIIDSATALYR----TDFSGRGELGARQISLARYLRDLVNIAETFHVAVIITNQVV 263

Query: 205 MKIGVMFGS----PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKV 254
                         +   GGN +   S+ RL +R      R+  I D   +  ++    +
Sbjct: 264 SNPDGAMSMFAGDVKKPIGGNIMAHASTTRLSLRKGKGSTRICKIYDSPLLPESEAMFSI 323

Query: 255 VKNKMASPFK 264
            +  +  P +
Sbjct: 324 TEAGINDPEE 333


>gi|15027141|emb|CAC44774.1| RecA protein [Lactobacillus paracasei subsp. paracasei]
 gi|15027143|emb|CAC44775.1| RecA protein [Lactobacillus paracasei subsp. paracasei]
          Length = 107

 Score = 84.5 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 70/105 (66%), Positives = 88/105 (83%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           +D  YA  LGV++  LL+SQPDTGEQ LEI D LV SGA+DI+VIDSVAAL PRAEIEGD
Sbjct: 1   MDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGD 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           MG++  G+QARLMSQALRKL+ SI+++K I +FINQ+R K+G++F
Sbjct: 61  MGDAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIIF 105


>gi|115610811|ref|XP_788683.2| PREDICTED: similar to rad51 [Strongylocentrotus purpuratus]
 gi|115941481|ref|XP_001181485.1| PREDICTED: similar to rad51 [Strongylocentrotus purpuratus]
          Length = 335

 Score = 84.5 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 85/257 (33%), Gaps = 34/257 (13%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              I  V++GS  LD  L  GG   G I EI+G   +GKT L        Q         
Sbjct: 92  RSEIIQVTTGSKELDKLL-QGGIETGSITEIFGEFRTGKTQLCHTMAVTCQLPIDNGGGE 150

Query: 96  GTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQALEI---TDMLVRSG 144
           G C ++D E          +           L N+  ++    +   ++      ++   
Sbjct: 151 GKCLYIDTEGTFRPERLIAVADRYNLSGSDVLDNVAYARAHNSDHQSQLLLQASAMMAES 210

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  AL          G      +   + + LR L          +V  NQ+ 
Sbjct: 211 RYALLIVDSATALYR----TDYSGRGELASRQMHLGRFLRTLLRLADEYGVAVVITNQVV 266

Query: 205 MKIG---VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
            ++    +    P+   GG+ +   S+ RL +R+           G     K+  +    
Sbjct: 267 AQVDGAAMFTSDPKKPIGGHIMAHASTTRLYLRKGR---------GETRICKIYDSPCLP 317

Query: 262 PFKQVEFDIMYGEGISF 278
             + +      G G + 
Sbjct: 318 EAEAMFAINPDGVGDAK 334


>gi|62858453|ref|NP_001016393.1| RAD51 homolog (RecA homolog) [Xenopus (Silurana) tropicalis]
 gi|134254224|gb|AAI35426.1| hypothetical protein LOC549147 [Xenopus (Silurana) tropicalis]
          Length = 336

 Score = 84.5 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 86/246 (34%), Gaps = 31/246 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              I  +S+GS  LD  L  GG   G I E++G   +GKT L        Q         
Sbjct: 93  RSEIIQISTGSKELDKLL-QGGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDRGGGE 151

Query: 96  GTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQA---LEITDMLVRSG 144
           G   ++D E          +           L N+  ++    +     L     ++   
Sbjct: 152 GKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMAES 211

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  AL  R +  G    S   M    +++ LR L          +V  NQ+ 
Sbjct: 212 RYALLIVDSATALY-RTDYSGRGELSARQMH---LARFLRMLLRLADEFGVAVVITNQVV 267

Query: 205 MKIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
            ++    +    P+   GGN +   S+ RL +R      R+  I D   +   +    + 
Sbjct: 268 AQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 327

Query: 256 KNKMAS 261
            + +  
Sbjct: 328 ADGVGD 333


>gi|316978565|gb|EFV61540.1| DNA repair and recombination protein RadA [Trichinella spiralis]
          Length = 364

 Score = 84.1 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 88/247 (35%), Gaps = 32/247 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              I  +++GS  LD  L  GG   G I E++G   +GKT L        Q         
Sbjct: 120 RSEIIQITTGSKELDKLL-QGGIETGSITEVFGEFRTGKTQLCHTLAVTCQLPVDMGGGE 178

Query: 96  GTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQA---LEITDMLVRSG 144
           G C ++D E          +           L N+  ++    +     L     ++   
Sbjct: 179 GKCLYIDTEGTFRPERLLSVADRFQLSGPDVLDNVAYARAYNTDHQSQLLIQASAMMSES 238

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  AL  R +  G    S   M    + + LR L          ++  NQ+ 
Sbjct: 239 RYALLIVDSATALY-RTDYSGRGELSARQMH---LGRFLRYLLRLADEFGVAVLITNQVV 294

Query: 205 MKIG----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKV 254
            ++     +    P+   GGN +   S+ RL +R      R+  I D   +  ++    +
Sbjct: 295 AQVDGGTAMFQADPKKPIGGNIMAHASTTRLYLRKGRGESRICKIYDSPCLPESEAVFAI 354

Query: 255 VKNKMAS 261
           + + +  
Sbjct: 355 LSSGIGD 361


>gi|147900484|ref|NP_001081236.1| DNA repair protein RAD51 homolog A [Xenopus laevis]
 gi|2500105|sp|Q91918|RA51A_XENLA RecName: Full=DNA repair protein RAD51 homolog A; Short=xRAD51.1
 gi|1054624|dbj|BAA07501.1| XRad51.1 [Xenopus laevis]
 gi|57033002|gb|AAH88930.1| LOC397726 protein [Xenopus laevis]
          Length = 336

 Score = 84.1 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 86/246 (34%), Gaps = 31/246 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              I  +S+GS  LD  L  GG   G I E++G   +GKT L        Q         
Sbjct: 93  RSEIIQISTGSKELDKLL-QGGVETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDRGGGE 151

Query: 96  GTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQA---LEITDMLVRSG 144
           G   ++D E          +           L N+  ++    +     L     ++   
Sbjct: 152 GKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMAES 211

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  AL  R +  G    S   M    +++ LR L          +V  NQ+ 
Sbjct: 212 RYALLIVDSATALY-RTDYSGRGELSARQMH---LARFLRMLLRLADEFGVAVVITNQVV 267

Query: 205 MKIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
            ++    +    P+   GGN +   S+ RL +R      R+  I D   +   +    + 
Sbjct: 268 AQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 327

Query: 256 KNKMAS 261
            + +  
Sbjct: 328 ADGVGD 333


>gi|45185912|ref|NP_983628.1| ACR226Wp [Ashbya gossypii ATCC 10895]
 gi|44981702|gb|AAS51452.1| ACR226Wp [Ashbya gossypii ATCC 10895]
          Length = 381

 Score = 84.1 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 93/244 (38%), Gaps = 25/244 (10%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  LG GG   G I E++G   +GK+ L        Q         G C +
Sbjct: 139 CLTTGSKNLDTLLG-GGIETGSITELFGEFRTGKSQLCHTLAVTCQIPLDMGGGEGKCLY 197

Query: 101 VDAEHALDSIY----ARKLGVDLK----NLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     I     A++ G+D      N+  ++    +  L +      ++      +I
Sbjct: 198 IDTEGTFRPIRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLI 257

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DS+ AL  R +  G    S   M      +AL++L      +  +   +        +
Sbjct: 258 VVDSIMALY-RTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGAAM 316

Query: 210 MFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMASPF 263
               P+   GGN +   S+ RL  +      R+  + D   +   +    + ++ +  P 
Sbjct: 317 FNPDPKKPIGGNIMAHSSTTRLGFKKGKGCQRLCKVVDSPCLPEAECVFAIYEDGIGDPR 376

Query: 264 KQVE 267
           +  E
Sbjct: 377 EDDE 380


>gi|15026991|emb|CAC44770.1| RecA protein [Lactobacillus casei ATCC 334]
          Length = 107

 Score = 84.1 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 69/105 (65%), Positives = 88/105 (83%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           +D  YA  LGV++  LL+SQPDTGEQ LEI D LV SGA+DI+VIDSVAAL PRAEIEGD
Sbjct: 1   MDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGD 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           MG++  G+QARLMSQALRKL+ SI++++ I +FINQ+R K+G++F
Sbjct: 61  MGDAHVGLQARLMSQALRKLSGSINKTETIALFINQIREKVGIIF 105


>gi|30686826|ref|NP_188928.2| DMC1 (DISRUPTION OF MEIOTIC CONTROL 1); ATP binding / DNA binding /
           DNA-dependent ATPase/ damaged DNA binding /
           nucleoside-triphosphatase/ nucleotide binding / protein
           binding [Arabidopsis thaliana]
 gi|21903409|sp|Q39009|DMC1_ARATH RecName: Full=Meiotic recombination protein DMC1 homolog
 gi|1790922|gb|AAC49617.1| AtDMC1 [Arabidopsis thaliana]
 gi|66792672|gb|AAY56438.1| At3g22880 [Arabidopsis thaliana]
          Length = 344

 Score = 84.1 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 101/276 (36%), Gaps = 39/276 (14%)

Query: 17  EAALSQI----QR--VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           EA + +I    ++   +G    M         + +  +++G   LD  LG GG     I 
Sbjct: 74  EAKVDKICEAAEKIVNFG---YMTGSDALIKRKSVVKITTGCQALDDLLG-GGIETSAIT 129

Query: 71  EIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYA----RKLGVD-- 118
           E +G   SGKT LA      +Q         G  A++D E             + G+D  
Sbjct: 130 EAFGEFRSGKTQLAHTLCVTTQLPTNMKGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPG 189

Query: 119 --LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
             L N++ ++  T E    +       +      I+++DS+ AL          G     
Sbjct: 190 AVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRILIVDSIIALFR----VDFTGRGELA 245

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRL 231
            + + ++Q L +L          +   NQ+    G       P+   GG+ L   +++RL
Sbjct: 246 DRQQKLAQMLSRLIKIAEEFNVAVYMTNQVIADPGGGMFISDPKKPAGGHVLAHAATIRL 305

Query: 232 DIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
             R      RV  + D  ++   +   ++ +  +A 
Sbjct: 306 LFRKGKGDTRVCKVYDAPNLAEAEASFQITQGGIAD 341


>gi|121709155|ref|XP_001272325.1| meiotic recombination protein dmc1 [Aspergillus clavatus NRRL 1]
 gi|119400474|gb|EAW10899.1| meiotic recombination protein dmc1 [Aspergillus clavatus NRRL 1]
          Length = 337

 Score = 84.1 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/279 (21%), Positives = 99/279 (35%), Gaps = 42/279 (15%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K L AA   I         M+L  Q    + +  +S+GS   D  LG GGF    I E+
Sbjct: 73  QKCLPAAAGFITA-------MELSHQ---RKRVVKISTGSKQFDSILG-GGFQSMSISEV 121

Query: 73  YGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKLGVDL------- 119
           +G    GKT L+      +Q         G  A++D E         ++           
Sbjct: 122 FGEFRCGKTQLSHTMSVVAQLPKEMGGADGKVAYIDTEGTFRPERIAQIAERFGVDSDSA 181

Query: 120 -KNLLISQPDTGEQALEITDMLVRSG---AVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
            +N+  ++    E  LE+ + L R        +++IDS+     R +  G         +
Sbjct: 182 QENIAYARALNSEHQLELLNTLSREFAGGEYRLLIIDSIMNCF-RVDYCGR---GELADR 237

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM----FGSPETTTGGNALKFYSSVRL 231
            + ++Q L KL          ++  NQ++   G              GG+ L   S+ R+
Sbjct: 238 QQKLNQFLMKLAHMAEEFNICVLMTNQVQSDPGASALFAGADGRKPVGGHVLAHASTTRV 297

Query: 232 DIR------RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
            +R      RV  I+D       +    +    +  P K
Sbjct: 298 LLRKGRGEERVAKIQDSPDCPEREATYVITNGGINDPDK 336


>gi|159119566|ref|XP_001710001.1| Dmc1b [Giardia lamblia ATCC 50803]
 gi|30578213|gb|AAP35103.1|AF485824_1 DMC1-B [Giardia intestinalis]
 gi|33667820|gb|AAQ24510.1| Dmc1b [Giardia intestinalis]
 gi|157438119|gb|EDO82327.1| Dmc1b [Giardia lamblia ATCC 50803]
          Length = 368

 Score = 84.1 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/283 (18%), Positives = 99/283 (34%), Gaps = 36/283 (12%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K ++     K L  A     + +  G+           + ++ +S+G    +  LG GG 
Sbjct: 93  KGISEAKVDKILSVATEMCGKTFITGS-----EALKKRQQVKRLSTGCADFNALLG-GGV 146

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKLGVD 118
               I E++G   +GKT L       +Q        GG   ++D E          +   
Sbjct: 147 ETMSITEVFGEFRTGKTQLCHTLAVTAQLPVSKGGGGGKTVYIDTEGTFRPEKVAPIAER 206

Query: 119 --------LKNLLISQPDTGEQALE---ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
                   L N+++++  T EQ +E       L+      ++++DS+ AL          
Sbjct: 207 FGLNPKKALDNIMVARVYTHEQQIECITALPKLMVENQFSLVIVDSLTALFR----VDFT 262

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG---VMFGSPETTTGGNALK 224
           G      + + + Q L  L          +   NQ+  ++    +    P+   GG+ L 
Sbjct: 263 GRGELADRQQKLGQHLSGLAKLADEFNLAVFVTNQVMAQVDGAAMFTADPKKPIGGHILA 322

Query: 225 FYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
             S+ RL +R      RV  I D  S+   +    +    +  
Sbjct: 323 HASTTRLYLRKGRGDTRVAKIYDSPSLAEGEASYSIAAEGIID 365


>gi|14571806|dbj|BAB61097.1| RiLim15 [Oryza sativa Indica Group]
          Length = 344

 Score = 84.1 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 55/272 (20%), Positives = 99/272 (36%), Gaps = 35/272 (12%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K  EAA   + + +  G+           + +  +++GS  L   LG GG     I E 
Sbjct: 78  DKICEAAEKLLSQGFITGS-----DLLIKRKSVVRITTGSQALYKLLG-GGIETLCITEA 131

Query: 73  YGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYA----RKLGVD---- 118
           +G   SGKT LA      +Q         G  A++D E             + G+D    
Sbjct: 132 FGEFRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAV 191

Query: 119 LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           L N++ ++  T E    +       +      ++++DSV AL          G      +
Sbjct: 192 LDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAER 247

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE--TTTGGNALKFYSSVRLDI 233
            + ++Q L +LT         +   NQ+    G      +     GG+ +   +++RL +
Sbjct: 248 QQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDLKKPAGGHRVAHAATIRLML 307

Query: 234 R------RVGSIKDKDSITGNQTRVKVVKNKM 259
           R      RV  I D  ++   +   +V    +
Sbjct: 308 RKGKGEQRVCKIFDAPNLPEGEAVFQVTSGGI 339


>gi|324512204|gb|ADY45060.1| DNA repair protein RAD51 A [Ascaris suum]
          Length = 346

 Score = 84.1 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 86/243 (35%), Gaps = 30/243 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTG 95
              I  + +GS  L+  LG GG   G I E++G   +GK+ L        Q         
Sbjct: 104 RSEIIQIETGSRELNRLLG-GGIETGSITEVFGEFRTGKSQLCHTLAVMCQLPIDMGGAE 162

Query: 96  GTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSG 144
           G C ++D E          +           L N++ ++    +  +++      ++   
Sbjct: 163 GKCLWIDTEGTFRPERLLAVAERYKLSGQDVLDNVVYARCYNTDHQMQLLVQASAMMAES 222

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++V+DS  AL          G      +  L+ + +R L          +V  NQ+ 
Sbjct: 223 RYALLVVDSATALFR----TDFSGRGELAARQMLLGKFMRTLLKLADEFGVAVVITNQVV 278

Query: 205 MKIGVMFGSPET--TTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVK 256
            ++       +T    GGN +   S+ RL +R      R+  I D   +  ++    +  
Sbjct: 279 AQVDAGIFQGDTKKPIGGNIIAHASTTRLYLRKGRGEARICKIYDSPCLPESEAMFAITT 338

Query: 257 NKM 259
             +
Sbjct: 339 QGI 341


>gi|331239939|ref|XP_003332621.1| DNA repair protein RAD51 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309311611|gb|EFP88202.1| DNA repair protein RAD51 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 343

 Score = 84.1 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 84/244 (34%), Gaps = 31/244 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG------GTCAFV 101
           +++GS  LD  LG GG     I E YG   +GK+ L  H     Q         G C F+
Sbjct: 105 ITTGSKNLDTMLG-GGIDTQSITEFYGEFRTGKSQLCHHLAVSCQLPANMGGGEGKCMFI 163

Query: 102 DAEHALDSIYA----RKLGVDLKNL-------LISQPDTGEQALEITDMLVRSGAVDIIV 150
           D E             + G+D + +            D   Q L     L+      I++
Sbjct: 164 DTEGTFRPERILAIAERYGMDGEEVLNNIAVARAYNSDHQSQLLREASRLMTLSRFAILI 223

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV- 209
           +DS  AL  R +  G    +          +          +    +V  NQ+       
Sbjct: 224 VDSATALY-RTDYSGRGELADRQAHLAKFLRGC---LGLAEQFGIAVVVTNQVMSSPDSG 279

Query: 210 --MFGSPETTTGGNALKFYSSVRLDIRRVG------SIKDKDSITGNQTRVKVVKNKMAS 261
               G  +   GGN +   S+ RL  R+         + D   +   +T++ + +N +  
Sbjct: 280 PGGGGLGKAPIGGNIMAHSSTTRLQFRKGRETTRIVKLIDSPCLPEGETKMAIYQNGIGD 339

Query: 262 PFKQ 265
           P ++
Sbjct: 340 PEEE 343


>gi|15790613|ref|NP_280437.1| DNA repair and recombination protein RadB [Halobacterium sp. NRC-1]
 gi|169236351|ref|YP_001689551.1| DNA repair and recombination protein RadB [Halobacterium salinarum
           R1]
 gi|13878696|sp|Q9HPF2|RADB_HALSA RecName: Full=DNA repair and recombination protein radB
 gi|226736611|sp|B0R636|RADB_HALS3 RecName: Full=DNA repair and recombination protein radB
 gi|10581135|gb|AAG19917.1| DNA repair protein [Halobacterium sp. NRC-1]
 gi|167727417|emb|CAP14205.1| DNA repair protein [Halobacterium salinarum R1]
          Length = 236

 Score = 84.1 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 93/234 (39%), Gaps = 21/234 (8%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + E    + +G   LD  LG GG  +G + ++YGP ++GKT +AL T   +   GG   +
Sbjct: 1   MREDDTHLPTGCGALDELLG-GGVERGTVTQLYGPPAAGKTNVALTTAVTTAAAGGLAVY 59

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPD--------TGEQALEITDMLVRSGAVDIIVID 152
           VD E    + + + L     +   +  +          EQA  + D    +   D+IV+D
Sbjct: 60  VDTEGLSLARFQQLLEARATDPEAASANVIVSDAHDFDEQAQAVRDTADFADRADLIVVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SV      A      G+   G   R ++  +  L S   +    +V  NQ+   +     
Sbjct: 120 SVTGFYRLA----RGGDDTTGDALRQVADQITHLLSLARKHDLAVVVTNQVFTDVDND-S 174

Query: 213 SPETTTGGNALKFYSS--VRLDIRRVGS-----IKDKDSITGNQTRVKVVKNKM 259
                 GG+ L  ++   +RLD  R G+      K +    G   + ++    +
Sbjct: 175 DRARPLGGHTLAHWTGTVLRLDRFRGGTRRATLEKHRAKPDGEHAQFQITDGGI 228


>gi|327310834|ref|YP_004337731.1| Fis family transcriptional regulator [Thermoproteus uzoniensis
           768-20]
 gi|326947313|gb|AEA12419.1| transcriptional regulator, Fis family [Thermoproteus uzoniensis
           768-20]
          Length = 313

 Score = 84.1 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 77/225 (34%), Gaps = 23/225 (10%)

Query: 35  LGSQGSIFEGIE-------VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           LG +    +  E        V +G   LD     GG  +G I E  G   +GK+ LA   
Sbjct: 64  LGRRPKAAKASELLKAQYKAVKTGVAELDEKSPWGGLREGFIFEFAGEFGAGKSMLAHQI 123

Query: 88  IAQSQKTG-GTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITD 138
             +S   G G   ++D E       A ++           L  + +  PD          
Sbjct: 124 AVKSIAEGFGDAVYIDTEGTFSPALAERMARRFGADPAAVLDKIFVYVPDNVSALEAFVK 183

Query: 139 MLVRSGAVDI---IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
             + +   +    +V+D++ AL  RAE  G    +    +   +    R+ T        
Sbjct: 184 SELPAHLKEGARTVVVDTITALY-RAEFVGRESLAERQQRLHYLVDWFRRHTRVF---NA 239

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           ++VF NQ+           +   GGN L    + R  + R    K
Sbjct: 240 LVVFTNQVMDVPEAFMTGLKRPAGGNVLAHAVNARFMMARPSKQK 284


>gi|264665855|gb|ACY70991.1| recombinase A [Tissierella creatinini]
          Length = 120

 Score = 84.1 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 82/120 (68%), Positives = 105/120 (87%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F++AEHALD  YA KLGV +++L+ISQPDTGEQALEIT+ LVRSGAVD++V+DSVAAL P
Sbjct: 1   FIEAEHALDPAYAEKLGVKIEDLIISQPDTGEQALEITEALVRSGAVDVVVVDSVAALVP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           +AEI+G+MG+S  G+QARLMSQALRKL  ++++S   ++FINQ+R KIGVMFG+PETT G
Sbjct: 61  KAEIDGEMGDSHMGLQARLMSQALRKLAGAVNKSNSTIIFINQLREKIGVMFGNPETTPG 120


>gi|164659209|ref|XP_001730729.1| hypothetical protein MGL_2183 [Malassezia globosa CBS 7966]
 gi|159104626|gb|EDP43515.1| hypothetical protein MGL_2183 [Malassezia globosa CBS 7966]
          Length = 309

 Score = 83.7 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 88/238 (36%), Gaps = 28/238 (11%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              +  +++GS  LD+ +G GG   G I E++G   +GK+ +        Q         
Sbjct: 66  RSDLITITTGSPALDLVIG-GGMETGSITELFGEFRTGKSQICHTLAVTCQLPVDMGGGE 124

Query: 96  GTCAFVDAEHALDSIY----ARKLGVD----LKNLLISQPDTGEQALEI---TDMLVRSG 144
           G C ++D E     +     A + G+D    L N+  ++    +  LE+      ++   
Sbjct: 125 GKCLYIDTEGTFRPVRLLAVAERFGLDGEEVLDNVAYARAYNADHQLELLVQAAAMMSES 184

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS+ +L  R +  G    S          + L +L      +  +   +    
Sbjct: 185 RFALLIVDSLTSLY-RTDFAGRGELSARQTHLARFLRTLMRLADEFGVAVVVTNQVVAQV 243

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
              G      +   GGN +   S+ RL +R+           GNQ   +VV +     
Sbjct: 244 DNAGFGGMDTKKPIGGNIVAHASTTRLSLRKGR---------GNQRICRVVDSPSLPE 292


>gi|50293765|ref|XP_449294.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528607|emb|CAG62268.1| unnamed protein product [Candida glabrata]
          Length = 334

 Score = 83.7 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 97/251 (38%), Gaps = 32/251 (12%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT--- 94
           Q  + + +  +S+GS  LD  LG GG     I E++G    GKT ++      +Q     
Sbjct: 86  QMDLRQKVISISTGSKQLDSVLG-GGIMTMSITEVFGEFRCGKTQMSHTLCVTAQLPKSM 144

Query: 95  ---GGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDM---L 140
               G  AF+D E        +++           L+N+  ++    E  +E+ +     
Sbjct: 145 GGGEGKVAFIDTEGTFRPERIKQIAERYDLDPDSCLENITYARALNSEHQMELVEQLGEE 204

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           + SG+  +I++DS+ A   R +  G         + + ++Q L KL          +   
Sbjct: 205 LSSGSYTLIIVDSIMA-NFRVDYCGRGE---LNERQQKLNQHLFKLNRLAEEFNLAVFMT 260

Query: 201 NQMRMKIGVM----FGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQT 250
           NQ++   G              GG+ L   S+ R+ +R      RV  ++D   +   + 
Sbjct: 261 NQVQSDPGASALFASADGRKPVGGHVLAHASATRILLRKGRGDERVAKLQDSPDMPEREC 320

Query: 251 RVKVVKNKMAS 261
              + +  +A 
Sbjct: 321 VYVIGEGGIAD 331


>gi|300708611|ref|XP_002996481.1| hypothetical protein NCER_100414 [Nosema ceranae BRL01]
 gi|239605787|gb|EEQ82810.1| hypothetical protein NCER_100414 [Nosema ceranae BRL01]
          Length = 332

 Score = 83.7 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 92/251 (36%), Gaps = 32/251 (12%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
              + +  +++GS  LD  L  GGF  G I E++G   +GKT L        Q       
Sbjct: 86  EKRKDLVYLTTGSSELDKLLN-GGFESGSITEVFGEFRTGKTQLCHTVAVTCQLPPEQGG 144

Query: 94  TGGTCAFVDAEHALDSIYA----RKLGVDLKNLLIS-------QPDTGEQALEITDMLVR 142
             G   ++D E    S        + G++ +++L +         D   Q L     L+ 
Sbjct: 145 ASGKAMYIDTEGTFRSERIFPIAERYGLNPEDVLENISYARAYNSDHQSQLLVQASALMS 204

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           +    +++IDS  AL          G    G +   +++ LR L +     +  ++  NQ
Sbjct: 205 TSKYSVLIIDSATALYR----TDFSGRGELGARQISLARYLRDLVNLAETYQVAVIITNQ 260

Query: 203 MRMKIGVMFGS----PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRV 252
           +               +   GGN +   S+ RL +R      R+  I D   +  ++   
Sbjct: 261 VVSNPDGAMSMFAGDVKKPIGGNIMAHASTTRLSLRKGRGSTRICKIYDSPLLPESEAMF 320

Query: 253 KVVKNKMASPF 263
            + +  +  P 
Sbjct: 321 SITEAGIKDPE 331


>gi|21226559|ref|NP_632481.1| DNA repair and recombination protein RadA [Methanosarcina mazei
           Go1]
 gi|20904832|gb|AAM30153.1| recombination/repair protein RadA [Methanosarcina mazei Go1]
          Length = 367

 Score = 83.7 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 89/248 (35%), Gaps = 39/248 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK------TGGTCAFV 101
           +++G    D  +G GG     I E+YG   SGKT +A       Q        GG+   +
Sbjct: 124 LTTGCTEFDEMMG-GGIETQAITELYGEFGSGKTQVAHQLAVNVQMDREHGGLGGSVIII 182

Query: 102 DAEHALDSIYARKLGVDL--------------KNLLISQPDTGEQALEITDMLV------ 141
           D E+        ++   L              +N+ +++       + + D  V      
Sbjct: 183 DTENTFRPERITQMVNGLSEKYGMELNPEEFLQNIHVARAYNSNHQILLVDSAVDLANEL 242

Query: 142 --RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
                 V ++++DS+ A   RAE  G         + + +++ +  L          +V 
Sbjct: 243 KEMGKPVRLLIVDSLMAHF-RAEYVGR---GTLADRQQKLNKHMHGLLRFGDLFNACVVV 298

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK------DKDSITGNQTRVK 253
            NQ+  K    FG P    GG+ +   ++ RL +R+    K      D  S+   +  V 
Sbjct: 299 TNQVMAKPDAFFGDPTRPIGGHIVGHTATFRLYLRKSKGEKRIIRLVDSPSLPEGEAVVA 358

Query: 254 VVKNKMAS 261
           V    +  
Sbjct: 359 VTTAGLTD 366


>gi|116754236|ref|YP_843354.1| DNA repair and recombination protein RadB [Methanosaeta thermophila
           PT]
 gi|116665687|gb|ABK14714.1| DNA repair and recombination protein RadB [Methanosaeta thermophila
           PT]
          Length = 221

 Score = 83.7 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 91/230 (39%), Gaps = 24/230 (10%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+ + SG   +D  LG GGF  G I +IYG   +GKT + +    Q+ + G    F+D E
Sbjct: 2   IKRIPSGCQSIDDLLG-GGFEAGIITQIYGESGTGKTNIVIQLSVQAVRLGSRVIFIDTE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI------IVIDSVAALT 158
                 + +  G + K +          +LE   M +R  +  +      +V+DS  +L 
Sbjct: 61  GFSPDRFVQIAGENAKEIASKIVVFQPLSLEQQHMAIRDASRIVGQGFGLVVLDSATSLY 120

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
             A     +  +      R ++  L +L     R    +V  NQ+ M +           
Sbjct: 121 RAA-----LEANDNRQIKRSLTAQLSELQEIARRHSIPVVVTNQVYMDVETGILR---PV 172

Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           GG +++      L + R+            + R++VVK++     +  +F
Sbjct: 173 GGTSMEHLCKAILALERLDK---------GRRRMRVVKHRSQPEGETADF 213


>gi|50290117|ref|XP_447490.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526800|emb|CAG60427.1| unnamed protein product [Candida glabrata]
          Length = 383

 Score = 83.7 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 92/244 (37%), Gaps = 25/244 (10%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  LG GG   G I E++G   +GK+ L        Q         G C +
Sbjct: 142 CLTTGSKNLDTLLG-GGIETGSITELFGEFRTGKSQLCHSLAVTCQIPLDLGGGEGKCLY 200

Query: 101 VDAEHALDSIY----ARKLGVDLK----NLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     +     A++ G+D      N+  ++    +  + +      ++      +I
Sbjct: 201 IDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQMRLLDAAAQMMSESRFSLI 260

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DSV AL  R +  G    S   M      +AL++L      +  +   +         
Sbjct: 261 VVDSVMALY-RTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMS 319

Query: 210 MFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMASPF 263
               P+   GGN +   S+ RL  +      R   + D   +   +    + ++ +  P 
Sbjct: 320 FNPDPKKPIGGNIMAHSSTTRLGFKKGKGCQRYCKVVDSPCLPEAECVFAIYEDGIGDPR 379

Query: 264 KQVE 267
           ++ E
Sbjct: 380 EEDE 383


>gi|327280164|ref|XP_003224823.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Anolis
           carolinensis]
          Length = 339

 Score = 83.7 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 86/246 (34%), Gaps = 31/246 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              I  +++GS  LD  L  GG   G I E++G   +GKT L        Q         
Sbjct: 96  RSEIIQITTGSKELDKLL-QGGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDRGGGE 154

Query: 96  GTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQA---LEITDMLVRSG 144
           G   ++D E          +           L N+  ++    +     L     ++   
Sbjct: 155 GKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMTES 214

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  AL  R +  G    S   M    +++ LR L          +V  NQ+ 
Sbjct: 215 RYALLIVDSATALY-RTDYSGRGELSARQMH---LARFLRMLLRLADEFGVAVVITNQVV 270

Query: 205 MKIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
            ++    +    P+   GGN +   S+ RL +R      R+  I D   +   +    + 
Sbjct: 271 AQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 330

Query: 256 KNKMAS 261
            + +  
Sbjct: 331 ADGVGD 336


>gi|311698168|gb|ADQ00378.1| Dmc1 [Pneumocystis murina]
 gi|311698170|gb|ADQ00379.1| Dmc1 [Pneumocystis murina]
          Length = 336

 Score = 83.4 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 91/250 (36%), Gaps = 32/250 (12%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---- 92
              S    +  +S+GS   D  LG GG     I E++G    GKT ++       Q    
Sbjct: 88  EVSSFRRRVNYISTGSKQFDAMLG-GGIQSMSITEVFGEFRCGKTQISHTMCVTCQLPKE 146

Query: 93  --KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVR 142
                G  A++D E        + +           + N+L+ +    E  +++ + +  
Sbjct: 147 MGGAEGKAAYLDTEGTFRPDRIKSIAARFGVDAEQAMNNILVGRAFNSEHQMDLINKMCT 206

Query: 143 SGAVD----IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
             + D    ++++DS+ AL  R +  G    S    +  +M   L +LT         + 
Sbjct: 207 IFSEDGRYRLLIVDSIMALF-RVDYSGRGELSERQQKLNIM---LSRLTRIAEEYNIAVF 262

Query: 199 FINQMRMKIGVMFG---SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249
             NQ++   G       +     GG+ L   S+ R+ +R      RV  I+D   +   +
Sbjct: 263 LTNQVQADPGATLMFASNDRKPVGGHVLAHASATRILLRKGRGEERVAKIQDSPDMPEGE 322

Query: 250 TRVKVVKNKM 259
               +    +
Sbjct: 323 CVYTIKAGGI 332


>gi|45384012|ref|NP_990504.1| DNA repair protein RAD51 homolog 1 [Gallus gallus]
 gi|585770|sp|P37383|RAD51_CHICK RecName: Full=DNA repair protein RAD51 homolog 1
 gi|299819|gb|AAB26354.1| homolog to S.cerevisiae [Gallus gallus]
          Length = 339

 Score = 83.4 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 89/258 (34%), Gaps = 34/258 (13%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              I  +++GS  LD  L  GG   G I E++G   +GKT L        Q         
Sbjct: 96  RSEIIQITTGSKELDKLL-QGGIETGSITELFGEFRTGKTQLCHTLAVTCQLPIDRGGGE 154

Query: 96  GTCAFVDAEHALDSIY----ARKLGVDLKNLLISQPD-------TGEQALEITDMLVRSG 144
           G   ++D E           A + G+   ++L +             Q L     ++   
Sbjct: 155 GKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMAES 214

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  AL  R +  G    S   M    +++ LR L          +V  NQ+ 
Sbjct: 215 RYALLIVDSATALY-RTDYSGRGELSARQMH---LARFLRMLLRLADEFGVAVVITNQVV 270

Query: 205 MKIG---VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
            ++    +    P+   GGN +   S+ RL +R+           G     K+  +    
Sbjct: 271 AQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGR---------GETRICKIYDSPCLP 321

Query: 262 PFKQVEFDIMYGEGISFF 279
             + +      G G +  
Sbjct: 322 EAEAMFAINADGVGDAKE 339


>gi|311698172|gb|ADQ00380.1| Dmc1 [Pneumocystis carinii]
 gi|311698174|gb|ADQ00381.1| Dmc1 [Pneumocystis carinii]
          Length = 336

 Score = 83.4 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 91/250 (36%), Gaps = 32/250 (12%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---- 92
              S    +  +S+GS   D  LG GG     I E++G    GKT ++       Q    
Sbjct: 88  EVSSFRRRVNYISTGSKQFDAMLG-GGIQSMSITEVFGEFRCGKTQISHTMCVTCQLPKE 146

Query: 93  --KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVR 142
                G  A++D E        + +           + N+L+ +    E  +++ + +  
Sbjct: 147 MGGAEGKAAYLDTEGTFRPDRIKSIAARFGVDAEQAMNNILVGRAFNSEHQMDLINKMCT 206

Query: 143 SGAVD----IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
             + D    ++++DS+ AL  R +  G    S    +  +M   L +LT         + 
Sbjct: 207 IFSEDGRYRLLIVDSIMALF-RVDYSGRGELSERQQKLNIM---LSRLTRIAEEYNIAVF 262

Query: 199 FINQMRMKIGVMFG---SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249
             NQ++   G       +     GG+ L   S+ R+ +R      RV  I+D   +   +
Sbjct: 263 LTNQVQADPGATLMFASNDRKPVGGHVLAHASATRILLRKGRGEERVAKIQDSPDMPEGE 322

Query: 250 TRVKVVKNKM 259
               +    +
Sbjct: 323 CVYTIKAGGI 332


>gi|326919838|ref|XP_003206184.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Meleagris
           gallopavo]
          Length = 339

 Score = 83.4 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 89/258 (34%), Gaps = 34/258 (13%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              I  +++GS  LD  L  GG   G I E++G   +GKT L        Q         
Sbjct: 96  RSEIIQITTGSKELDKLL-QGGIETGSITELFGEFRTGKTQLCHTLAVTCQLPIDRGGGE 154

Query: 96  GTCAFVDAEHALDSIY----ARKLGVDLKNLLISQPD-------TGEQALEITDMLVRSG 144
           G   ++D E           A + G+   ++L +             Q L     ++   
Sbjct: 155 GKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMAES 214

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  AL  R +  G    S   M    +++ LR L          +V  NQ+ 
Sbjct: 215 RYALLIVDSATALY-RTDYSGRGELSARQMH---LARFLRMLLRLADEFGVAVVITNQVV 270

Query: 205 MKIG---VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
            ++    +    P+   GGN +   S+ RL +R+           G     K+  +    
Sbjct: 271 AQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGR---------GETRICKIYDSPCLP 321

Query: 262 PFKQVEFDIMYGEGISFF 279
             + +      G G +  
Sbjct: 322 EAEAMFAINADGVGDAKE 339


>gi|282165652|ref|YP_003358037.1| DNA repair and recombination protein RadA [Methanocella paludicola
           SANAE]
 gi|282157966|dbj|BAI63054.1| DNA repair and recombination protein RadA [Methanocella paludicola
           SANAE]
          Length = 323

 Score = 83.4 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 83/226 (36%), Gaps = 29/226 (12%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
              + +  + +GS  LD  LG GG     I E YG   SGKT +A     + Q       
Sbjct: 75  ERRKQVGKLKTGSNALDELLG-GGVETQSITEFYGEFGSGKTQVAHQLAVKVQLPPEEGG 133

Query: 94  TGGTCAFVDAEHALDSIYARKL------GVDLKN------LLISQPDTGEQAL------- 134
            GG+   +D E+        ++      G DL        + +++       +       
Sbjct: 134 LGGSVIMIDTENTFRPERIAQMVKGLKGGEDLDPEEFLKNIHVARAYNSNHQILLVESAS 193

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           E+ + +  S     ++I        R+E  G         + + +++ +  L      + 
Sbjct: 194 ELAEKMRDSDRPVKLIIVDSLTAHFRSEYVGR---GTLADRQQKLNKHMHDLMRFGDINN 250

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
             +V  NQ++ K    FG P    GG+ +   ++ RL +R+    K
Sbjct: 251 AAIVVTNQVQAKPDAFFGDPTRPIGGHIVGHTATFRLYLRKSKGEK 296


>gi|70724320|gb|AAZ07709.1| RecA [Lactobacillus buchneri]
 gi|70724322|gb|AAZ07710.1| RecA [Weissella confusa]
          Length = 101

 Score = 83.4 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 70/101 (69%), Positives = 88/101 (87%)

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA  LGV++ +LL+SQPDTGEQ L+ITD LV SGA+DI+VIDSVAAL PRAEIEG+MG++
Sbjct: 1   YAEHLGVNIDDLLLSQPDTGEQGLQITDALVTSGAIDIVVIDSVAALVPRAEIEGEMGDA 60

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
             G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMF
Sbjct: 61  HVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMF 101


>gi|67904210|ref|XP_682361.1| hypothetical protein AN9092.2 [Aspergillus nidulans FGSC A4]
 gi|40742735|gb|EAA61925.1| hypothetical protein AN9092.2 [Aspergillus nidulans FGSC A4]
 gi|259485496|tpe|CBF82567.1| TPA: meiotic recombination protein (Dmc1), putative
           (AFU_orthologue; AFUA_7G02200) [Aspergillus nidulans
           FGSC A4]
          Length = 658

 Score = 83.4 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 59/281 (20%), Positives = 103/281 (36%), Gaps = 36/281 (12%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  Q    + +  +S+GS   D  LG GGF    I E++G    GKT L+      +Q
Sbjct: 86  MELSHQ---RKRVVRISTGSKQFDSILG-GGFQSMSISEVFGEFRCGKTQLSHTMSVVAQ 141

Query: 93  ------KTGGTCAFVDAEHALDSIYA----RKLGVDLK----NLLISQPDTGEQALEITD 138
                    G  A++D E             + GVD      N+  ++    E  LE+ +
Sbjct: 142 LPKDMGGAEGKVAYIDTEGTFRPERIGQIAERFGVDPDSAKENIAYARALNSEHQLELLN 201

Query: 139 MLVRSG---AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
            L +        +++IDS+     R +  G         + + ++Q L KL         
Sbjct: 202 TLSKEFVGGEYRLLIIDSIMNCF-RVDFCGRGE---LADRQQKLNQFLMKLAHMAEEFNV 257

Query: 196 ILVFINQMRMKIGV----MFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
            ++  NQ++   G              GG+ L   S+ R+ +R      RV  I+D    
Sbjct: 258 CVLMTNQVQSDPGASALFSGADGRKPVGGHVLAHASTTRVLLRKGRGEERVAKIQDSPDC 317

Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
              +    +    +  P K    D++     S   + I++ 
Sbjct: 318 PEREATYLITNGGIDDPDKL-IVDVVDHSKKSKMKKNIEIA 357


>gi|156842362|ref|XP_001644549.1| hypothetical protein Kpol_1052p39 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115194|gb|EDO16691.1| hypothetical protein Kpol_1052p39 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 334

 Score = 83.4 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 97/249 (38%), Gaps = 32/249 (12%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----- 94
           +I + +  +S+GS  LD  LG GG     I E++G    GKT +A      +Q       
Sbjct: 88  NIRQRVLSLSTGSKQLDSILG-GGIMTMSITEVFGEFRCGKTQMAHTLCVTTQLPREMGG 146

Query: 95  -GGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDML---VR 142
             G  A++D E        +++           L+N+  ++    E  +E+ + L   + 
Sbjct: 147 GEGKVAYIDTEGTFRPERIKQIAERYNLDPDACLENVSYARALNSEHQMELVEKLGEDLS 206

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG   +IV+DS+ A   R +  G         + + ++Q L KL          +   NQ
Sbjct: 207 SGEYRLIVMDSIMA-NFRVDYCGR---GELNERQQKLNQHLFKLNRVAEEFNVAVFMTNQ 262

Query: 203 MRMKIGVM----FGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRV 252
           ++   G              GG+ L   S+ R+ +R      RV  ++D   +   +   
Sbjct: 263 VQSDPGASALFASADGRKPVGGHVLAHASATRILLRKGRGDERVAKLQDSPDMPEKECTY 322

Query: 253 KVVKNKMAS 261
            + +N +  
Sbjct: 323 IIGENGITD 331


>gi|115394436|gb|ABI97150.1| Rad51 [Pneumocystis carinii]
 gi|115394438|gb|ABI97151.1| Rad51 [Pneumocystis carinii]
          Length = 343

 Score = 83.4 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 87/243 (35%), Gaps = 32/243 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  L  GG   G I EI+G   +GK+ +        Q         G C +
Sbjct: 103 SITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQICHTLAVTCQLPIDMGGGEGKCLY 161

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDM---LVRSGAVDII 149
           +D E          +           L N+  ++    +  L++      ++      ++
Sbjct: 162 IDTEGTFRPTRLLAVADRYGLNGEEVLDNVAYARAYNADHQLQLLGQAANMMAESRFSLL 221

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DS  +L  R +  G    S   M    +++ LR L          +V  NQ+  ++  
Sbjct: 222 IVDSATSLY-RTDFAGRGELSARQMH---LAKFLRTLQRLADEYGIAVVITNQVVAQVDG 277

Query: 209 ---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
              +    P+   GGN +   S+ RL +R      R+  I D   +        +    +
Sbjct: 278 NASMFNPDPKKPIGGNIIAHSSTTRLSLRKGRGEQRICKIYDSPCLAEADAVFAITNGGV 337

Query: 260 ASP 262
             P
Sbjct: 338 DDP 340


>gi|323337982|gb|EGA79221.1| Rad51p [Saccharomyces cerevisiae Vin13]
          Length = 334

 Score = 83.4 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 93/244 (38%), Gaps = 25/244 (10%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  LG GG   G I E++G   +GK+ L        Q         G C +
Sbjct: 93  CLTTGSKNLDTLLG-GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLY 151

Query: 101 VDAEHALDSIY----ARKLGVDLK----NLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     +     A++ G+D      N+  ++    +  L +      ++      +I
Sbjct: 152 IDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLI 211

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DSV AL  R +  G    S   M      +AL++L      +  +   +         
Sbjct: 212 VVDSVMALY-RTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMA 270

Query: 210 MFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMASPF 263
               P+   GGN +   S+ RL  +      R+  + D   +   +    + ++ +  P 
Sbjct: 271 FNPDPKKPIGGNIMAHSSTTRLGFKKGKGCQRLCKVVDSPCLPEAECVFAIYEDGVGDPR 330

Query: 264 KQVE 267
           ++ E
Sbjct: 331 EEDE 334


>gi|115394440|gb|ABI97152.1| Rad51 [Pneumocystis murina]
 gi|115394442|gb|ABI97153.1| Rad51 [Pneumocystis murina]
          Length = 343

 Score = 83.4 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 87/243 (35%), Gaps = 32/243 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  L  GG   G I EI+G   +GK+ +        Q         G C +
Sbjct: 103 SITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQICHTLAVTCQLPIDMGGGEGKCLY 161

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDM---LVRSGAVDII 149
           +D E          +           L N+  ++    +  L++      ++      ++
Sbjct: 162 IDTEGTFRPTRLLAVADRYGLNGEEVLDNVAYARAYNADHQLQLLGQAANMMAESRFSLL 221

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208
           ++DS  +L  R +  G    S   M    +++ LR L          +V  NQ+  ++  
Sbjct: 222 IVDSATSLY-RTDFAGRGELSARQMH---LAKFLRTLQRLADEYGIAVVITNQVVAQVDG 277

Query: 209 ---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
              +    P+   GGN +   S+ RL +R      R+  I D   +        +    +
Sbjct: 278 NASMFNPDPKKPIGGNIIAHSSTTRLSLRKGRGEQRICKIYDSPCLAEADAVFAITNGGV 337

Query: 260 ASP 262
             P
Sbjct: 338 DDP 340


>gi|400968|sp|Q02349|RECA_LEUME RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|149633|gb|AAA25266.1| recombination and repair protein [Leuconostoc mesenteroides]
          Length = 104

 Score = 83.4 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 72/103 (69%), Positives = 85/103 (82%)

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA  LGV    LL+SQPDTGEQ LEI D LV+SGAVDIIV+DSVAAL PRAEIEG+MG+S
Sbjct: 2   YAEALGVQKDELLLSQPDTGEQGLEIADALVQSGAVDIIVVDSVAALVPRAEIEGEMGDS 61

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
             G+QARLMSQALRKL  +++R+  I +FINQ+R KIGVMFG+
Sbjct: 62  HVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGVMFGN 104


>gi|37956359|gb|AAP15356.1| RecA [Geobacter hydrogenophilus]
          Length = 158

 Score = 83.4 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 66/86 (76%), Positives = 77/86 (89%)

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           +M VRSGAVD++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  IS+S C +
Sbjct: 1   EMFVRSGAVDVLVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGIISKSNCCV 60

Query: 198 VFINQMRMKIGVMFGSPETTTGGNAL 223
           +FINQ+RMKIGVMFGSPETTTGGNA 
Sbjct: 61  IFINQIRMKIGVMFGSPETTTGGNAP 86


>gi|255712479|ref|XP_002552522.1| KLTH0C06842p [Lachancea thermotolerans]
 gi|238933901|emb|CAR22084.1| KLTH0C06842p [Lachancea thermotolerans]
          Length = 381

 Score = 83.4 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 93/244 (38%), Gaps = 25/244 (10%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  LG GG   G I E++G   +GK+ L        Q         G C +
Sbjct: 140 CLTTGSKNLDTLLG-GGIETGSITELFGEFRTGKSQLCHTLAVTCQIPLDMGGGEGKCLY 198

Query: 101 VDAEHALDSIY----ARKLGVDLK----NLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     I     A++ G+D      N+  ++    +  L +      ++      +I
Sbjct: 199 IDTEGTFRPIRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLI 258

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DS+ AL  R +  G    S   M      +AL++L      +  +   +        +
Sbjct: 259 VVDSIMALY-RTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGSAM 317

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRV------GSIKDKDSITGNQTRVKVVKNKMASPF 263
               P+   GGN +   S+ RL  ++         + D   +   +    + ++ +  P 
Sbjct: 318 FNPDPKKPIGGNIMAHSSTTRLGFKKGRGCQRFCKVVDSPCLPEAECIFAIYEDGVGDPR 377

Query: 264 KQVE 267
           ++ E
Sbjct: 378 EEDE 381


>gi|161528894|ref|YP_001582720.1| DNA repair and recombination protein RadA [Nitrosopumilus maritimus
           SCM1]
 gi|160340195|gb|ABX13282.1| DNA repair and recombination protein RadA [Nitrosopumilus maritimus
           SCM1]
          Length = 388

 Score = 83.0 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 53/284 (18%), Positives = 101/284 (35%), Gaps = 32/284 (11%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M+      IV+K++        I + +   +           + I  +++G+  LD  L 
Sbjct: 46  MEKDTAEKIVNKARQHLVDGGLIAKHFTSAS-----EIYKHRQSIGKITTGTNCLDT-LF 99

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARK 114
            GG     + E+YG    GKT  A       QKT       G+  ++D E+         
Sbjct: 100 DGGLETQALTEVYGEFGCGKTQFAHTMSVMVQKTKEEGGLEGSVLYIDTENTFRPERIVS 159

Query: 115 LG--------VDLKNLLISQPDTGEQA---LEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           +           L N+++++          LE    ++    + +IV DS   L  R+E 
Sbjct: 160 IAQAHEMDPEKVLDNIIVARAYNSAHQTLILEEAGPIIEENNIKLIVADSAVGLF-RSEY 218

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
              +G      + + ++  +  L+       C  +  NQ+     V FG P    GGN +
Sbjct: 219 ---LGRGTLSNRQQKLNHFVHLLSRIAETYNCAAIATNQVMASPDVFFGDPTRPIGGNVV 275

Query: 224 KFYSSVRLDIRRVGSIK-----DKDSITGNQTRVKVVKNKMASP 262
              S+ R+  ++ G  +     D       +    + +  +  P
Sbjct: 276 AHTSTYRIYFKKSGKKRIARMVDSPHHPEEEVIFALGEAGVIDP 319


>gi|257387834|ref|YP_003177607.1| DNA repair and recombination protein RadB [Halomicrobium mukohataei
           DSM 12286]
 gi|257170141|gb|ACV47900.1| DNA repair and recombination protein RadB [Halomicrobium mukohataei
           DSM 12286]
          Length = 235

 Score = 83.0 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 93/233 (39%), Gaps = 28/233 (12%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VS+G   +D  LG GGF +G + +IYGP ++GKT LAL    +    G +  ++D E 
Sbjct: 3   EYVSTGCAEIDDLLG-GGFERGAVTQIYGPPAAGKTNLALSGAVEVAAAGDSALYIDTEG 61

Query: 106 ALDSIYARKLGVDLKNLLISQP------------DTGEQALEITDMLVRSGAVDIIVIDS 153
                  +  G        +              D  +Q + + D    +  V++IV+DS
Sbjct: 62  LSADRMEQIAGARASETDETLAALAERIVVSEALDFEDQEVAVQDAAELASQVELIVLDS 121

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
                     +GD GE+L       +++ +  L S   +    +   NQ+          
Sbjct: 122 ATGFYRLERDDGDGGEALRD-----VARQITHLLSLARKHDLAVAVTNQVFADPDS---D 173

Query: 214 PETTTGGNALKFYSS--VRLDIRRVGS-----IKDKDSITGNQTRVKVVKNKM 259
                GG+ L  +S   +RLD  R G+      K +    G+  + ++ +  +
Sbjct: 174 GTRALGGHTLNHWSGAILRLDRFRGGNRRATLEKHRAKAAGDTAQFRITEAGL 226


>gi|70724318|gb|AAZ07708.1| RecA [Lactobacillus buchneri]
          Length = 102

 Score = 83.0 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 70/101 (69%), Positives = 88/101 (87%)

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA  LGV++ +LL+SQPDTGEQ L+ITD LV SGA+DI+VIDSVAAL PRAEIEG+MG++
Sbjct: 1   YAEHLGVNIDDLLLSQPDTGEQGLQITDALVTSGAIDIVVIDSVAALVPRAEIEGEMGDA 60

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
             G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMF
Sbjct: 61  HVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMF 101


>gi|397827|dbj|BAA02962.1| HsRad51 [Homo sapiens]
          Length = 339

 Score = 83.0 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 86/246 (34%), Gaps = 31/246 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              I  +++GS  LD  L  GG   G I E++G   +GKT +        Q         
Sbjct: 96  RSEIIQITTGSKELDKLL-QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGE 154

Query: 96  GTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQA---LEITDMLVRSG 144
           G   ++D E          +           L N+  ++    +     L     ++   
Sbjct: 155 GKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVES 214

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  AL  R +  G    S   M    +++ LR L          +V  NQ+ 
Sbjct: 215 RYALLIVDSATALY-RTDYSGRGELSARQMH---LARFLRMLLRLADEFGVAVVITNQVV 270

Query: 205 MKIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
            ++    +    P+   GGN +   S+ RL +R      R+  I D   +   +    + 
Sbjct: 271 AQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICQIYDSPCLPEAEAMFAIN 330

Query: 256 KNKMAS 261
            + +  
Sbjct: 331 ADGVGD 336


>gi|156097941|ref|XP_001615003.1| meiotic recombination protein DMC1-like protein [Plasmodium vivax
           SaI-1]
 gi|148803877|gb|EDL45276.1| meiotic recombination protein DMC1-like protein, putative
           [Plasmodium vivax]
          Length = 347

 Score = 83.0 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 59/289 (20%), Positives = 105/289 (36%), Gaps = 39/289 (13%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K ++     K LE A S+I+   G     QL  + S    +  +++GS  LD  LG GG 
Sbjct: 71  KGISEAKVEKILEVA-SKIENCSGFITAHQLVHKRS---KVLKITTGSSTLDKTLG-GGI 125

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKLGVD 118
               I E++G    GKT +       +Q         G   ++D E         K+   
Sbjct: 126 ESMSITELFGENRCGKTQICHTLAVSAQLPRSVGGGNGKVCYIDTEGTFRPEKICKIAER 185

Query: 119 --------LKNLLISQPDTGEQ---ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
                   L N+L ++  T E     L ++   +      ++V+DS+ +L          
Sbjct: 186 YGIDGEDVLDNILYARAFTHEHLYQLLAVSAAKMCEEPFALLVVDSIISLFR----VDFS 241

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG---SPETTTGGNALK 224
           G      + + +++ +  L+    +    ++  NQ+    G       +P    GG+ + 
Sbjct: 242 GRGELSERQQKLNKTMSILSKLGEQFNIAVLITNQVMSDPGATMTFIANPMKPVGGHVIG 301

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
             S+ RL +R+           G+Q   KV       P     F +  G
Sbjct: 302 HASTTRLSLRKGK---------GDQRVCKVYDAPNL-PEVDCIFQLSDG 340


>gi|292656510|ref|YP_003536407.1| DNA repair and recombination protein RadB [Haloferax volcanii DS2]
 gi|47155278|emb|CAG28963.1| DNA repair and recombination protein RadB [Haloferax volcanii]
 gi|291372352|gb|ADE04579.1| DNA repair and recombination protein RadB [Haloferax volcanii DS2]
          Length = 229

 Score = 83.0 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 94/233 (40%), Gaps = 24/233 (10%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
            E VS+G   LD  L  GGF +G + ++YGP ++GKT +AL    +    GGT  ++D E
Sbjct: 2   TESVSTGCDALDDLL-DGGFERGTVTQVYGPSAAGKTNVALSAAVRVAAAGGTVVYIDTE 60

Query: 105 HALDSIY--------ARKLGVDLKNLLISQPDTG-EQALEITDMLVRSGAVDIIVIDSVA 155
                 +           +      L+IS+     +Q   + D    + + D+IV+DS  
Sbjct: 61  GLSVDRFQQLAEAVAPEDVESVTSRLMISEAYDFEDQEQAVRDAEEFAASADLIVLDSAT 120

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
               R E      E   G   R +++ +  L S   +    +V  NQ+            
Sbjct: 121 GFY-RLE---RTAEGDGGEALRRVARQVTHLLSLARKHDLAVVLTNQVYADPDS---DRT 173

Query: 216 TTTGGNALKFYSS--VRLDIRRVGS-----IKDKDSITGNQTRVKVVKNKMAS 261
              GG+ L+ ++   VRLD  R G+      K +    G     K+    +++
Sbjct: 174 RALGGHTLEHWTGTVVRLDRFRGGNRRATLEKHRAKPAGETATFKITDRGLSA 226


>gi|15027129|emb|CAC44783.1| RecA protein [Lactobacillus zeae]
          Length = 106

 Score = 83.0 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 64/105 (60%), Positives = 87/105 (82%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           +D  YA +LGV++ +LL+SQP++GEQ LEI +ML+ S AVDI+VIDSVAAL P+AEIEG 
Sbjct: 1   MDPKYAAELGVNIDDLLLSQPNSGEQGLEIAEMLIESAAVDIVVIDSVAALVPKAEIEGA 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           +G+S  G+QARLMSQALRK+  SI+ +  +++FINQ+R K+GVMF
Sbjct: 61  IGDSHVGLQARLMSQALRKMAGSINNTNTLVIFINQLREKVGVMF 105


>gi|224050703|ref|XP_002196004.1| PREDICTED: RAD51 homolog (RecA homolog, E. coli) [Taeniopygia
           guttata]
          Length = 339

 Score = 83.0 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 88/246 (35%), Gaps = 31/246 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              I  +++GS  LD  L  GG   G I E++G   +GKT L        Q         
Sbjct: 96  RSEIIQITTGSKELDKLL-QGGIETGSITELFGEFRTGKTQLCHTLAVTCQLPIDRGGGE 154

Query: 96  GTCAFVDAEHALDSIY----ARKLGVDLKNLLISQPD-------TGEQALEITDMLVRSG 144
           G   ++D E           A + G+   ++L +             Q L     ++   
Sbjct: 155 GKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMAES 214

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  AL  R +  G    S   M    +++ LR L          +V  NQ+ 
Sbjct: 215 RYALLIVDSATALY-RTDYSGRGELSARQMH---LARFLRMLLRLADEFGVAVVITNQVV 270

Query: 205 MKIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
            ++    +    P+   GGN +   S+ RL +R      R+  I D   +   +    + 
Sbjct: 271 AQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 330

Query: 256 KNKMAS 261
            + +  
Sbjct: 331 ADGVGD 336


>gi|68076139|ref|XP_679989.1| meiotic recombination protein dmc1-like protein, [Plasmodium
           berghei strain ANKA]
 gi|56500849|emb|CAH94824.1| meiotic recombination protein dmc1-like protein, putative
           [Plasmodium berghei]
          Length = 345

 Score = 83.0 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 60/285 (21%), Positives = 109/285 (38%), Gaps = 39/285 (13%)

Query: 5   KEMNIVDKSKALEAALSQIQRV--YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
           K ++ V   K LE A S+I+    +  G   QL  + S    +  +++GS  LD  LG G
Sbjct: 69  KGISEVKVDKILEVA-SKIENCSAFITGN--QLVQKRS---KVLKITTGSSVLDKTLG-G 121

Query: 63  GFPKGRIVEIYGPESSGKTTLAL------HTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
           GF    I E++G    GKT +              Q   G   ++D E         K+ 
Sbjct: 122 GFESMSITELFGENRCGKTQVCHTLAVTAQLPKNMQGGNGKVCYIDTEGTFRPEKICKIA 181

Query: 117 --------VDLKNLLISQPDTGEQ---ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
                     L N+L ++  T E     L  +   +      ++V+DS+ +L  R +  G
Sbjct: 182 QRFGLNSEDVLDNILYARAFTHEHLYQLLATSAAKMCEEPFALLVVDSIISLF-RVDFSG 240

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG---SPETTTGGNA 222
               S    + + +++ +  L+    +    +V  NQ+    G       +P    GG+ 
Sbjct: 241 RGNLS---ERQQKLNKIMSVLSKLGEQFNIAIVITNQVMSDPGATMTFIANPMKPVGGHV 297

Query: 223 LKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
           +   S+ RL +R      RV  + D  ++   +   ++    +  
Sbjct: 298 IGHASTTRLSLRKGKGDQRVCKVYDAPNLPEIECIFQLSDGGVID 342


>gi|4996226|dbj|BAA78377.1| Rad51 [Cynops pyrrhogaster]
          Length = 337

 Score = 83.0 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 87/257 (33%), Gaps = 34/257 (13%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              I  V++GS  LD  L  GG   G I E++G   +GKT L        Q         
Sbjct: 94  RSEIIQVTTGSKELDKLL-QGGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDRGGGE 152

Query: 96  GTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQA---LEITDMLVRSG 144
           G   ++D E          +           L N+  ++    +     L     ++   
Sbjct: 153 GKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMAES 212

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  AL  R +  G    S   M    +++ LR L          +V  NQ+ 
Sbjct: 213 RYALLIVDSATALY-RTDYSGRGELSARQMH---LARFLRMLLRLADEFGVAVVITNQVV 268

Query: 205 MKIG---VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
            ++    +    P+   GGN +   S+ RL +R+           G     K+  +    
Sbjct: 269 AQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGR---------GETRICKIYDSPCLP 319

Query: 262 PFKQVEFDIMYGEGISF 278
             + +      G G + 
Sbjct: 320 EAEAMFAINPDGVGDAK 336


>gi|189197611|ref|XP_001935143.1| DNA repair protein RAD51 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187981091|gb|EDU47717.1| DNA repair protein RAD51 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 341

 Score = 83.0 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 91/251 (36%), Gaps = 30/251 (11%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------ 92
           G   + +  +S+GS  LD  LG GGF    I E++G    GKT L+      +Q      
Sbjct: 95  GQHRKRVIKISTGSKALDAVLG-GGFQTMSISEVFGEFRCGKTQLSHTMSVITQLPKDMG 153

Query: 93  -KTGGTCAFVDAEHALDSIYARKLGVDL----KNLLISQPDTGEQALEITDM---LVRSG 144
              G             +  A + GVD      N+  ++    E  +E+ +       S 
Sbjct: 154 GAEGKVAYIGTFRPERIAQIAERFGVDPETAQDNITYARAVNSEHQMELLNKVAEFFVSN 213

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS-RSKCILVFINQM 203
              +++IDS+ AL          G      + + ++Q L KLT          ++  NQ+
Sbjct: 214 EYRLLIIDSIMALFR----VDYTGRGELNERQQKLNQFLSKLTHVAEAEFNVAVLLTNQV 269

Query: 204 RMKIGVM----FGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVK 253
           +   G              GG+ L   S+ R+ +R      RV  I+D   +   +    
Sbjct: 270 QSDPGASALFAGADGRKPIGGHILAHASATRILLRKGRGEERVAKIQDSPDMPEKEATYI 329

Query: 254 VVKNKMASPFK 264
           +    +  P K
Sbjct: 330 ITNGGINDPEK 340


>gi|282165496|ref|YP_003357881.1| DNA repair and recombination protein RadB [Methanocella paludicola
           SANAE]
 gi|282157810|dbj|BAI62898.1| DNA repair and recombination protein RadB [Methanocella paludicola
           SANAE]
          Length = 227

 Score = 83.0 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 89/232 (38%), Gaps = 24/232 (10%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  + +GS  LD  LG GGF  G I +++G  +SGKT + L     + + G    ++D E
Sbjct: 8   INRLPTGSKVLDGLLG-GGFEAGTISQLFGEPASGKTNICLQLAVNTLRAGKRVVYIDTE 66

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI------IVIDSVAALT 158
                 + +  G D + L          + E   + V+     +      I++DS  A  
Sbjct: 67  GFSVERFQQIAGEDAQKLAQKLIHFKPTSFEEQYVAVKETEKIVGQNVGLIILDSATAFY 126

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
            R E+E         +  R ++     L     +    +V  NQ+ M +           
Sbjct: 127 -RVELESRDS----MLLKRELANQATILLGLARKYDIAVVITNQIYMDVD---KEELRAV 178

Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           GGN L+  S V + + R G         G +  V   K++  +  +  EF I
Sbjct: 179 GGNMLEHISKVIVQLSRTG--------IGTRQAVLR-KHRSMAEGQSAEFRI 221


>gi|255954943|ref|XP_002568224.1| Pc21g11930 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589935|emb|CAP96090.1| Pc21g11930 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 351

 Score = 82.6 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 55/259 (21%), Positives = 95/259 (36%), Gaps = 35/259 (13%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  Q    + +  +S+GS   D  L  GGF    I E++G    GKT L+      +Q
Sbjct: 100 MELHHQ---RKKVVRISTGSKQFDAILN-GGFQSMSISEVFGEFRCGKTQLSHTMSVVAQ 155

Query: 93  ------KTGGTCAFVDAEHALDSIYA----RKLGVDLK----NLLISQPDTGEQALEITD 138
                    G  A++D E             + G+D      N+  ++    E  LE+ +
Sbjct: 156 LPKELGGAAGRVAYIDTEGTFRPERIAQIAERFGLDPDTAQENISYARALNSEHQLELLN 215

Query: 139 MLVRSG---AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
            L ++       ++VIDS+     R +  G         + + ++Q L KL         
Sbjct: 216 TLSQAFVGGEYRLLVIDSIMNCF-RVDYCGR---GELADRQQKLNQFLMKLAHMAEEFNV 271

Query: 196 ILVFINQMRMKIGVM----FGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
            ++  NQ++   G              GG+ L   S+ R+ +R      RV  I+D    
Sbjct: 272 CVLMTNQVQSDPGASALFAGADGRKPVGGHVLAHASTTRVLLRKGRGDERVAKIQDSPDC 331

Query: 246 TGNQTRVKVVKNKMASPFK 264
              +    +    +  P K
Sbjct: 332 AEREAIYVITNGGINDPEK 350


>gi|307352867|ref|YP_003893918.1| DNA repair and recombination protein RadA [Methanoplanus
           petrolearius DSM 11571]
 gi|307156100|gb|ADN35480.1| DNA repair and recombination protein RadA [Methanoplanus
           petrolearius DSM 11571]
          Length = 323

 Score = 82.6 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 47/266 (17%), Positives = 98/266 (36%), Gaps = 45/266 (16%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           + KG            + +  +++     D  +G GG     I+E YG   SGK+ +A  
Sbjct: 66  FRKGT-----DVLEERKKVRKLTTFVPEFDALMG-GGLETMSIIEFYGEFGSGKSQIAHQ 119

Query: 87  TIAQSQ------KTGGTCAFVDAEHALDSIYARKLGVDLK------------NLLISQPD 128
               +Q         G+  ++D E+       R++   L             ++ +++  
Sbjct: 120 MAVNAQLPEDVGGLNGSVIYIDTENTFRPERIRQMVEGLDLEDVPSPEEFLEHIHVAEAF 179

Query: 129 TGEQALEI--------TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           T +  + +         ++      + +IV+DS+ A   RAE  G        ++ + ++
Sbjct: 180 TSDHQMLLLDNVRELAAELKETDKPLKLIVVDSLMAHF-RAEYAGR---GTLSLRQQKLN 235

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           + +  L         +++  NQ++    V FG P   TGGN +   S  R+ +R+     
Sbjct: 236 KHMYDLAKLAKEFNAVVIVTNQVQSNPAVFFGDPTKPTGGNIVGHASKFRVYLRKSK--- 292

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQV 266
                 G +   K+V +      +  
Sbjct: 293 ------GGKRVAKLVDSPDQPEGEAA 312


>gi|400967|sp|Q02348|RECA_LACHE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|149558|gb|AAA25242.1| recombination and repair protein [Lactobacillus helveticus]
          Length = 104

 Score = 82.6 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 65/103 (63%), Positives = 89/103 (86%)

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA  LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++
Sbjct: 2   YAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDA 61

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
             G+QARLMSQALRKL+ +IS++K I +FINQ+R K+G+MFG+
Sbjct: 62  HVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGIMFGN 104


>gi|126277684|ref|XP_001370830.1| PREDICTED: similar to RAD51 homolog (RecA homolog, E. coli) (S.
           cerevisiae), isoform 1 [Monodelphis domestica]
          Length = 339

 Score = 82.6 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 88/246 (35%), Gaps = 31/246 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              I  +++GS  LD  L  GG   G I EI+G   +GKT +        Q         
Sbjct: 96  RSEIIQITTGSKELDKLL-QGGIETGSITEIFGEFRTGKTQICHTLAVTCQLPIDRGGGE 154

Query: 96  GTCAFVDAEHALDSIY----ARKLGVDLKNLLISQPD-------TGEQALEITDMLVRSG 144
           G   ++D E           A + G+   ++L +             Q L     ++   
Sbjct: 155 GKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMVES 214

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  AL  R +  G    S   M    +++ LR L          +V  NQ+ 
Sbjct: 215 RYALLIVDSSTALY-RTDYSGRGELSARQMH---LARFLRMLLRLADEFGVAVVITNQVV 270

Query: 205 MKIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
            ++    +    P+   GGN +   S+ RL +R      R+  I D   +   +    + 
Sbjct: 271 AQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAVFAIN 330

Query: 256 KNKMAS 261
            + +  
Sbjct: 331 ADGVGD 336


>gi|221053592|ref|XP_002258170.1| Meiotic recombination protein DMC1-like protein [Plasmodium
           knowlesi strain H]
 gi|193808003|emb|CAQ38707.1| Meiotic recombination protein DMC1-like protein,putative
           [Plasmodium knowlesi strain H]
          Length = 347

 Score = 82.6 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 98/278 (35%), Gaps = 38/278 (13%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K ++     K LE A S+I+      + +           +  +++GS  LD  LG GG 
Sbjct: 71  KGISEAKVEKILEVA-SKIENC---SSFITANQLAHKRSKVLKITTGSSSLDRTLG-GGI 125

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKLGVD 118
               I E++G    GKT +       +Q         G   ++D E         K+   
Sbjct: 126 ESMSITELFGENRCGKTQICHTLAVSAQLPRSAGGGNGKVCYIDTEGTFRPEKICKIAER 185

Query: 119 --------LKNLLISQPDTGEQ---ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
                   L N+L ++  T E     L ++   +      ++V+DS+ +L          
Sbjct: 186 YGIDGEDVLDNILYARAFTHEHLYQLLAVSAAKMCEEPFALLVVDSIISLFR----VDFS 241

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG---SPETTTGGNALK 224
           G      + + +++ L  L+    +    ++  NQ+    G       +P    GG+ + 
Sbjct: 242 GRGELSERQQKLNKTLSVLSKLGEQFNIAVLITNQVMSDPGATMTFVANPMKPVGGHVIG 301

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
             S+ RL +R+           G+Q   KV        
Sbjct: 302 HASTTRLSLRKGK---------GDQRVCKVYDAPNLPE 330


>gi|296005023|ref|XP_001349356.2| meiotic recombination protein dmc1-like protein [Plasmodium
           falciparum 3D7]
 gi|13876949|gb|AAK43698.1|AF356553_1 meiotic recombination protein DMC1-like protein [Plasmodium
           falciparum]
 gi|225632246|emb|CAD51205.2| meiotic recombination protein dmc1-like protein [Plasmodium
           falciparum 3D7]
          Length = 347

 Score = 82.6 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 102/283 (36%), Gaps = 35/283 (12%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K ++     K LE A S+I+      + +           +  +++GS   D  LG GG 
Sbjct: 71  KGISEAKVDKILEVA-SKIENC---SSFITANELVQKRSKVLKITTGSTVFDQTLG-GGI 125

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKLGVD 118
               I E++G    GKT +       +Q         G   ++D E         K+   
Sbjct: 126 ESMCITELFGENRCGKTQVCHTLAVTAQLPKSLNGGNGKVCYIDTEGTFRPEKVCKIAER 185

Query: 119 --------LKNLLISQPDTGEQ---ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
                   L N+L ++  T E     L I+   +      ++V+DS+ +L          
Sbjct: 186 YGLDGEAVLDNILYARAFTHEHLYQLLAISAAKMCEEPFALLVVDSIISLFR----VDFS 241

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG---SPETTTGGNALK 224
           G      + + +++ +  L+    +    ++  NQ+    G       +P    GG+ + 
Sbjct: 242 GRGELSERQQKLNKTMSILSKLSEQFNIAILITNQVMSDPGATMTFIANPMKPVGGHVIG 301

Query: 225 FYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
             S++RL +R      RV  + D  ++   +   ++    +  
Sbjct: 302 HASTIRLSLRKGKGDQRVCKVYDAPNLPEVECIFQLSDKGVID 344


>gi|178056768|ref|NP_001116653.1| DNA repair protein RAD51 homolog 1 [Sus scrofa]
 gi|167600352|gb|ABZ89107.1| Rad51 [Sus scrofa]
 gi|168085455|dbj|BAG09486.1| DNA repair protein RAD51 [Sus scrofa]
          Length = 339

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 86/246 (34%), Gaps = 31/246 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              I  +++GS  LD  L  GG   G I E++G   +GKT +        Q         
Sbjct: 96  RSEIIQITTGSKELDKLL-QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGE 154

Query: 96  GTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQA---LEITDMLVRSG 144
           G   ++D E          +           L N+  ++    +     L     ++   
Sbjct: 155 GKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVES 214

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              +++IDS  AL  R +  G    S   M    +++ LR L          +V  NQ+ 
Sbjct: 215 RYALLIIDSATALY-RTDYSGRGELSARQMH---LARFLRMLLRLADEFGVAVVITNQVV 270

Query: 205 MKIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
            ++    +    P+   GGN +   S+ RL +R      R+  I D   +   +    + 
Sbjct: 271 AQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 330

Query: 256 KNKMAS 261
            + +  
Sbjct: 331 ADGVGD 336


>gi|20094878|ref|NP_614725.1| DNA repair and recombination protein RadA [Methanopyrus kandleri
           AV19]
 gi|19888111|gb|AAM02655.1| RadA recombinase [Methanopyrus kandleri AV19]
          Length = 317

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 56/290 (19%), Positives = 110/290 (37%), Gaps = 50/290 (17%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M  R   +I ++ + ++     +++               +      +++GS  LD  LG
Sbjct: 45  MSERDVEDIQEELRNIDVEFETLEK---------------LERKRRRITTGSSALDEILG 89

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGGT---CAFVDAEHALDSIYARK 114
            GG P G + E  GP  SGK+ +        Q   + GG      F+D E  +     + 
Sbjct: 90  -GGVPCGELTEFAGPFGSGKSQIVFQLCVNVQLPEEEGGLESKAIFIDTEGTVSPGRIKG 148

Query: 115 L--------GVDLKNLLISQPDTGEQAL---EITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           +        G  L+N+ ++Q  + E+ +   E    L     + ++VIDS+ A   RAE 
Sbjct: 149 MAEALGLDPGEALRNVFVTQVRSVEEQMRAAEEAHKLCEREDIGLVVIDSLTAHF-RAEY 207

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG---SPETTTGG 220
              +G+     +   + + + +L +        +VF NQ+ + I              GG
Sbjct: 208 S-KLGD--VSERQARLMKHVDQLRNLAMDHDVAVVFTNQVHVDIEAATKGKGRRYEPVGG 264

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
             +   ++ R+ +RR             + R+  + +    P ++  F I
Sbjct: 265 TIVAHQATHRIMLRRAK----------GEVRIARIIDSPYLPQREAAFRI 304


>gi|871832|dbj|BAA08255.1| recA-like protein [Arabidopsis thaliana]
          Length = 342

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 90/246 (36%), Gaps = 33/246 (13%)

Query: 17  EAALSQI----QR--VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           EA + +I    ++   +G    M         + +  +++G   LD  LG GG     I 
Sbjct: 74  EAKVDKICEAAEKIVNFG---YMTGSDALIKRKLVVKITTGCQALDDLLG-GGIETSAIT 129

Query: 71  EIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYA----RKLGVD-- 118
           E +G   SGKT LA      +Q         G  A++D E             + G+D  
Sbjct: 130 EAFGEFRSGKTQLAHTLCVTTQLPTNMKGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPG 189

Query: 119 --LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
             L N++ ++  T E    +       +      I+++DS+ AL          G     
Sbjct: 190 AVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRILIVDSIIALFR----VDFTGRGELA 245

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRL 231
            + + ++Q L +L          +   NQ+    G       P+   GG+ L   +++RL
Sbjct: 246 DRQQKLAQMLSRLIKIAEEFNVAVYMTNQVIADPGGGMFISDPKKPAGGHVLAHAATIRL 305

Query: 232 DIRRVG 237
             R+  
Sbjct: 306 LFRKGK 311


>gi|166714623|gb|ABY88038.1| RecA [Stenotrophomonas sp. LMG 10857]
          Length = 90

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 61/89 (68%), Positives = 72/89 (80%), Gaps = 2/89 (2%)

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           RKLT +I RS  ++VFINQ+R KIGVM    SPE TTGGNALKFY+SVRLDIRR+G+IK 
Sbjct: 1   RKLTGNIKRSNTLVVFINQLRHKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKK 60

Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDI 270
            D I GNQT++KVVKNK+A PFKQV  +I
Sbjct: 61  GDEIIGNQTKIKVVKNKLAPPFKQVITEI 89


>gi|60829742|gb|AAX36891.1| RAD51-like [synthetic construct]
 gi|61369103|gb|AAX43285.1| RAD51-like [synthetic construct]
          Length = 340

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 86/246 (34%), Gaps = 31/246 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              I  +++GS  LD  L  GG   G I E++G   +GKT +        Q         
Sbjct: 96  RSEIIQITTGSKELDKLL-QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGE 154

Query: 96  GTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQA---LEITDMLVRSG 144
           G   ++D E          +           L N+  ++    +     L     ++   
Sbjct: 155 GKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVES 214

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  AL  R +  G    S   M    +++ LR L          +V  NQ+ 
Sbjct: 215 RYALLIVDSATALY-RTDYSGRGELSARQMH---LARFLRMLLRLADEFGVAVVITNQVV 270

Query: 205 MKIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
            ++    +    P+   GGN +   S+ RL +R      R+  I D   +   +    + 
Sbjct: 271 AQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 330

Query: 256 KNKMAS 261
            + +  
Sbjct: 331 ADGVGD 336


>gi|91773967|ref|YP_566659.1| DNA repair and recombination protein RadA [Methanococcoides
           burtonii DSM 6242]
 gi|121691598|sp|Q12UG7|RADA_METBU RecName: Full=DNA repair and recombination protein radA
 gi|91712982|gb|ABE52909.1| DNA repair and recombination protein RadA [Methanococcoides
           burtonii DSM 6242]
          Length = 325

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 85/221 (38%), Gaps = 33/221 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +S+G    D  +G GG     I E+YG   SGKT +A       Q        GG+   +
Sbjct: 82  LSTGCTEFDEMMG-GGIETQSITEMYGEFGSGKTQIAHQLAVNVQLPPEQGGLGGSVIMI 140

Query: 102 DAEHALDSIYARKLGVD--------------LKNLLISQPDTGEQALEITD--------M 139
           D E+        ++                 LKN+ +++       + + D        +
Sbjct: 141 DTENTFRPERIAQMVKGISDKHGIEYDPEEFLKNIHVARAFNSNHQILLVDSANELANEL 200

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
                 V ++++DS+ A   RAE    +G      + + +++ L ++      S   +V 
Sbjct: 201 KNTEMPVKLLIVDSLTAHF-RAEY---IGRGTLADRQQKLNKHLHEILRFGDLSNACVVV 256

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
            NQ+  K    FG P    GG+ L   ++ RL IR+    K
Sbjct: 257 TNQVMSKPDAFFGDPTKPIGGHILGHTATFRLYIRKSKGEK 297


>gi|291246123|gb|ADD85186.1| RecA [Borrelia recurrentis]
          Length = 109

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 71/108 (65%), Positives = 95/108 (87%)

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++  L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAAL P+AEI+G+MG++  G+QAR
Sbjct: 2   NINELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGLQAR 61

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           LMS+ALRK+T+ +S+S   ++FINQ+RMKIG++FGSPETTTGGNALKF
Sbjct: 62  LMSKALRKITAILSKSNACIMFINQIRMKIGLVFGSPETTTGGNALKF 109


>gi|254578216|ref|XP_002495094.1| ZYRO0B03190p [Zygosaccharomyces rouxii]
 gi|238937984|emb|CAR26161.1| ZYRO0B03190p [Zygosaccharomyces rouxii]
          Length = 432

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 92/244 (37%), Gaps = 25/244 (10%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  LG GG   G I E++G   +GK+ L        Q         G C +
Sbjct: 191 CLTTGSKNLDTLLG-GGMETGSITELFGEFRTGKSQLCHTLAVTCQIPLDVGGGEGKCLY 249

Query: 101 VDAEHALDSIY----ARKLGVDLK----NLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     +     A++ G+D      N+  ++    +  + +      ++      ++
Sbjct: 250 IDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQIRLLDAAAQMMSESRFSLV 309

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DSV AL  R +  G    S   M      +AL++L      +  +   +         
Sbjct: 310 VVDSVMALY-RTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMS 368

Query: 210 MFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMASPF 263
               P+   GGN +   S+ RL  R      R+  + D   +        + ++ +  P 
Sbjct: 369 FNPDPKKPIGGNIMAHSSTTRLGFRKGKGCQRLCKVVDSPCLPEADCIFAIYEDGVGDPR 428

Query: 264 KQVE 267
           ++ E
Sbjct: 429 EEDE 432


>gi|54696276|gb|AAV38510.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [synthetic
           construct]
          Length = 340

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 86/246 (34%), Gaps = 31/246 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              I  +++GS  LD  L  GG   G I E++G   +GKT +        Q         
Sbjct: 96  RSEIIQITTGSKELDKLL-QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDQGGGE 154

Query: 96  GTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQA---LEITDMLVRSG 144
           G   ++D E          +           L N+  ++    +     L     ++   
Sbjct: 155 GKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVES 214

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  AL  R +  G    S   M    +++ LR L          +V  NQ+ 
Sbjct: 215 RYALLIVDSATALY-RTDYSGRGELSARQMH---LARFLRMLLRLADEFGVAVVITNQVV 270

Query: 205 MKIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
            ++    +    P+   GGN +   S+ RL +R      R+  I D   +   +    + 
Sbjct: 271 AQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 330

Query: 256 KNKMAS 261
            + +  
Sbjct: 331 ADGVGD 336


>gi|7509776|pir||T26822 hypothetical protein Y43C5A.6 - Caenorhabditis elegans
          Length = 391

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 95/279 (34%), Gaps = 40/279 (14%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K ++     K ++ A+  +Q  +  GA             +  + +GS  LD  LG GG 
Sbjct: 114 KGISDQKAEKIMKEAMKFVQMGFTTGA-----EVHVKRSQLVQIRTGSASLDRLLG-GGI 167

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKLGVD 118
             G I E+YG   +GKT L        Q         G C ++D            +   
Sbjct: 168 ETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGKCMYIDTNATFRPERIIAIAQR 227

Query: 119 --------LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
                   L+N+ +++    E  + +      ++      ++++D   A   R E  G  
Sbjct: 228 YNMDSAHVLENIAVARAYNSEHLMALIIRAGAMMSESRYAVVIVDCATAHF-RNEYTGR- 285

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG----VMFGSPETTTGGNAL 223
                  +   +S  L+ L          ++  NQ+  ++     +     +   GG+ +
Sbjct: 286 --GDLAERQMKLSAFLKCLAKLADEYGVAVIITNQVVAQVDGGASMFQADAKKPIGGHII 343

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
              S+ RL +R+           G     K+V++     
Sbjct: 344 AHMSTTRLYLRKGK---------GENRVAKMVQSPNLPE 373


>gi|313125588|ref|YP_004035852.1| DNA repair and recombination protein radb [Halogeometricum
           borinquense DSM 11551]
 gi|312291953|gb|ADQ66413.1| DNA repair and recombination protein RadB [Halogeometricum
           borinquense DSM 11551]
          Length = 231

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 100/245 (40%), Gaps = 33/245 (13%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E V++G   LD  LG GGF +G + ++YGP ++GKT +AL    +    GGT  ++D E 
Sbjct: 3   ESVTTGCRSLDDLLG-GGFERGTVTQVYGPPAAGKTNVALSAAVRVAAAGGTVVYIDTEG 61

Query: 106 ALDSIYA----------RKLGVDLKNLLISQPDTGEQALE-ITDMLVRSGAVDIIVIDSV 154
                +           + +      L++S+    E+  E + D    +   D++V+DS 
Sbjct: 62  LSVDRFQQLAEHVAGPEQSIEDVTSRLIVSEAHDFEEQEEAVRDTTEFAEQADLVVLDSA 121

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
                        G    G   R +++ +  L S   +    +V  NQ+           
Sbjct: 122 TGFYRLERTMDKDG----GESLRRVARQVTHLLSLARKHDLAVVITNQVFSDPDS---DQ 174

Query: 215 ETTTGGNALKFYSS--VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
               GG+ L+ ++   +R+D  R           GN+ R  + K++     +   F+I  
Sbjct: 175 IRALGGHTLEHWTGAVLRIDRFRG----------GNR-RATLEKHRAKPAGETATFEITD 223

Query: 273 GEGIS 277
           G GIS
Sbjct: 224 G-GIS 227


>gi|148223319|ref|NP_001080559.1| DNA repair protein RAD51 homolog B [Xenopus laevis]
 gi|2500106|sp|Q91917|RA51B_XENLA RecName: Full=DNA repair protein RAD51 homolog B; Short=xRAD51.2
 gi|1054622|dbj|BAA07500.1| XRad51.2 [Xenopus laevis]
 gi|28302165|gb|AAH46650.1| Rad51 protein [Xenopus laevis]
 gi|80477159|gb|AAI08487.1| Rad51 protein [Xenopus laevis]
          Length = 336

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 85/246 (34%), Gaps = 31/246 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              I  + +GS  LD  L  GG   G I E++G   +GKT L        Q         
Sbjct: 93  RSEIIQIGTGSKELDKLL-QGGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDRGGGE 151

Query: 96  GTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQA---LEITDMLVRSG 144
           G   ++D E          +           L N+  ++    +     L     ++   
Sbjct: 152 GKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMAES 211

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  AL  R +  G    S   M    +++ LR L          +V  NQ+ 
Sbjct: 212 RYALLIVDSATALY-RTDYSGRGELSARQMH---LARFLRMLLRLADEFGVAVVITNQVV 267

Query: 205 MKIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
            ++    +    P+   GGN +   S+ RL +R      R+  I D   +   +    + 
Sbjct: 268 AQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 327

Query: 256 KNKMAS 261
            + +  
Sbjct: 328 ADGVGD 333


>gi|19924133|ref|NP_002866.2| DNA repair protein RAD51 homolog 1 isoform 1 [Homo sapiens]
 gi|55641879|ref|XP_510313.1| PREDICTED: RAD51 homolog protein isoform 5 [Pan troglodytes]
 gi|114656377|ref|XP_001144621.1| PREDICTED: RAD51 homolog protein isoform 3 [Pan troglodytes]
 gi|114656380|ref|XP_001144693.1| PREDICTED: RAD51 homolog protein isoform 4 [Pan troglodytes]
 gi|297696332|ref|XP_002825350.1| PREDICTED: DNA repair protein RAD51 homolog 1-like isoform 1 [Pongo
           abelii]
 gi|548663|sp|Q06609|RAD51_HUMAN RecName: Full=DNA repair protein RAD51 homolog 1; Short=HsRAD51;
           Short=hRAD51; AltName: Full=RAD51 homolog A
 gi|285977|dbj|BAA03189.1| RAD51 [Homo sapiens]
 gi|5733658|gb|AAD49705.1| Rad51 [Homo sapiens]
 gi|7767554|gb|AAF69145.1| RAD51 [Homo sapiens]
 gi|27368250|gb|AAN87149.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [Homo
           sapiens]
 gi|49168602|emb|CAG38796.1| RAD51 [Homo sapiens]
 gi|60817856|gb|AAX36441.1| RAD51-like [synthetic construct]
 gi|61358913|gb|AAX41640.1| RAD51-like [synthetic construct]
 gi|119612840|gb|EAW92434.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae), isoform
           CRA_d [Homo sapiens]
 gi|189069251|dbj|BAG36283.1| unnamed protein product [Homo sapiens]
 gi|261860564|dbj|BAI46804.1| RAD51 homolog [synthetic construct]
          Length = 339

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 86/246 (34%), Gaps = 31/246 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              I  +++GS  LD  L  GG   G I E++G   +GKT +        Q         
Sbjct: 96  RSEIIQITTGSKELDKLL-QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGE 154

Query: 96  GTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQA---LEITDMLVRSG 144
           G   ++D E          +           L N+  ++    +     L     ++   
Sbjct: 155 GKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVES 214

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  AL  R +  G    S   M    +++ LR L          +V  NQ+ 
Sbjct: 215 RYALLIVDSATALY-RTDYSGRGELSARQMH---LARFLRMLLRLADEFGVAVVITNQVV 270

Query: 205 MKIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
            ++    +    P+   GGN +   S+ RL +R      R+  I D   +   +    + 
Sbjct: 271 AQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 330

Query: 256 KNKMAS 261
            + +  
Sbjct: 331 ADGVGD 336


>gi|115486271|ref|NP_001068279.1| Os11g0615800 [Oryza sativa Japonica Group]
 gi|18874069|dbj|BAB85490.1| Rad51 [Oryza sativa Japonica Group]
 gi|77551901|gb|ABA94698.1| DNA repair protein RAD51, putative, expressed [Oryza sativa
           Japonica Group]
 gi|113645501|dbj|BAF28642.1| Os11g0615800 [Oryza sativa Japonica Group]
 gi|218193367|gb|EEC75794.1| hypothetical protein OsI_12723 [Oryza sativa Indica Group]
 gi|222616333|gb|EEE52465.1| hypothetical protein OsJ_34631 [Oryza sativa Japonica Group]
          Length = 339

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/239 (22%), Positives = 87/239 (36%), Gaps = 34/239 (14%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            I  V++GS  LD  L  GG   G I EIYG   SGKT L        Q         G 
Sbjct: 98  EIIQVTTGSRELDKIL-DGGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGK 156

Query: 98  CAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAV 146
             ++DAE         ++           L+N+  ++    +    +      ++     
Sbjct: 157 ALYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMIETRF 216

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++++DS  AL  R +  G    S   M    M++ LR L          +V  NQ+  +
Sbjct: 217 ALMIVDSATALY-RTDFSGRGELSARQMH---MAKFLRSLQKLADEFGVAVVITNQVVAQ 272

Query: 207 IG---VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +    +  G      GGN +   S+ RL +R+           G +   KV+ +   + 
Sbjct: 273 VDGSAMFAGPQIKPIGGNIMAHASTTRLALRKGR---------GEERICKVISSPCLAE 322


>gi|18874071|dbj|BAB85491.1| Rad51 [Oryza sativa Japonica Group]
 gi|218186098|gb|EEC68525.1| hypothetical protein OsI_36814 [Oryza sativa Indica Group]
          Length = 339

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/239 (22%), Positives = 87/239 (36%), Gaps = 34/239 (14%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            I  V++GS  LD  L  GG   G I EIYG   SGKT L        Q         G 
Sbjct: 98  EIIQVTTGSRELDKIL-DGGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGK 156

Query: 98  CAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAV 146
             ++DAE         ++           L+N+  ++    +    +      ++     
Sbjct: 157 ALYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMIETRF 216

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++++DS  AL  R +  G    S   M    M++ LR L          +V  NQ+  +
Sbjct: 217 ALMIVDSATALY-RTDFSGRGELSARQMH---MAKFLRSLQKLADEFGVAVVITNQVVAQ 272

Query: 207 IG---VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +    +  G      GGN +   S+ RL +R+           G +   KV+ +   + 
Sbjct: 273 VDGSAMFAGPQIKPIGGNIMAHASTTRLALRKGR---------GEERICKVISSPCLAE 322


>gi|298674073|ref|YP_003725823.1| DNA repair and recombination protein RadB [Methanohalobium
           evestigatum Z-7303]
 gi|298287061|gb|ADI73027.1| DNA repair and recombination protein RadB [Methanohalobium
           evestigatum Z-7303]
          Length = 222

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 79/227 (34%), Gaps = 21/227 (9%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            + SG   LD  LG GGF  G + ++YG   SGKT L +    +  K      +VD E  
Sbjct: 4   RLPSGCKPLDNLLG-GGFETGIVSQVYGEPGSGKTNLCIQLSVECVKQEKKVIYVDTEAL 62

Query: 107 LDSIYARKLGVDLKNLLISQPDTGE-----QALEITDMLVRSGAVDIIVIDSVAALTPRA 161
               + +  G + K +  +           Q   I D    S     ++I   A    R 
Sbjct: 63  SPDRFKQIAGDNSKEIAQNIIIYEPFNFEEQYSAIKDTEKISEENIGLIIVDSATAFYRF 122

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
           E+E    E       R +S  +  L     +    +V  NQ+               GG+
Sbjct: 123 ELE---NEDSSIQTRRELSNQIGYLHGLARKHSLSVVITNQIYTDAST---GEVKPIGGS 176

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
            ++  S   L   R G+         N+ R  + K++     +  EF
Sbjct: 177 GIEHLSKTILQFERTGN---------NKRRAILQKHRSRPEGETCEF 214


>gi|295661572|ref|XP_002791341.1| meiotic recombination protein DMC1 [Paracoccidioides brasiliensis
           Pb01]
 gi|226280903|gb|EEH36469.1| meiotic recombination protein DMC1 [Paracoccidioides brasiliensis
           Pb01]
          Length = 541

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 92/250 (36%), Gaps = 38/250 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG Q    + +  +S+GS   D  L  GGF    I E+YG    GKT L+      +Q
Sbjct: 12  MELGHQ---RKRVVKISTGSKQFDSILA-GGFQSMSISEVYGEFRCGKTQLSHTMSVVAQ 67

Query: 93  ------KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITD 138
                    G  A++D E         ++           L+N+  ++    E  LE+ +
Sbjct: 68  LPKDMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDSDSALENITYARALNSEHQLELLN 127

Query: 139 MLVRSG---AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
            L +        +++IDS+     R +  G         + + ++Q L KL         
Sbjct: 128 TLSKEFAGGEYRLLIIDSIMNCF-RVDYCGR---GELADRQQKLNQFLMKLAHMAEEFNV 183

Query: 196 ILVFINQMRMKIGVM----FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
            ++  NQ++   G              GG+ L   S+ R+ +R+           G +  
Sbjct: 184 CVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTRVLLRKGR---------GEERV 234

Query: 252 VKVVKNKMAS 261
            K+  + +  
Sbjct: 235 AKIQDSPVLP 244


>gi|54696278|gb|AAV38511.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [Homo
           sapiens]
          Length = 339

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 86/246 (34%), Gaps = 31/246 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              I  +++GS  LD  L  GG   G I E++G   +GKT +        Q         
Sbjct: 96  RSEIIQITTGSKELDKLL-QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGEGE 154

Query: 96  GTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQA---LEITDMLVRSG 144
           G   ++D E          +           L N+  ++    +     L     ++   
Sbjct: 155 GKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVES 214

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  AL  R +  G    S   M    +++ LR L          +V  NQ+ 
Sbjct: 215 RYALLIVDSATALY-RTDYSGRGELSARQMH---LARFLRMLLRLADEFGVAVVITNQVV 270

Query: 205 MKIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
            ++    +    P+   GGN +   S+ RL +R      R+  I D   +   +    + 
Sbjct: 271 AQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 330

Query: 256 KNKMAS 261
            + +  
Sbjct: 331 ADGVGD 336


>gi|126180099|ref|YP_001048064.1| DNA repair and recombination protein RadB [Methanoculleus
           marisnigri JR1]
 gi|166218769|sp|A3CXI2|RADB_METMJ RecName: Full=DNA repair and recombination protein radB
 gi|125862893|gb|ABN58082.1| DNA repair and recombination protein RadB [Methanoculleus
           marisnigri JR1]
          Length = 224

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 90/231 (38%), Gaps = 26/231 (11%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
             + VS+GS   D  LG GG  +  I +IYG  +SGK+TL L     + + G +  ++D 
Sbjct: 2   KTDRVSTGSTAFDDLLG-GGLERRAITQIYGEPASGKSTLCLMAAVATLRAGNSVVYIDT 60

Query: 104 EHALDSIYARKLGVD----LKNLLISQPDTGEQALEITD-----MLVRSGAVDIIVIDSV 154
           E      + +  G +       L + +P    Q   +       +      V ++V+DS 
Sbjct: 61  EGFSVERFTQIAGENAGTLADRLYLFEPLDFAQQGTMIADAEGLLKNGHAPVGLLVMDSA 120

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
            AL  R E++      L     R +S  + KL     +    ++  NQ+ M +     + 
Sbjct: 121 TALY-RTELD------LGREAIRKLSHHMIKLLGLAKKYDIPVLITNQIYMDVERDRVAG 173

Query: 215 ETTTGGNALKFYSSVRLDI------RRVGSIKDKDSITGNQTRVKVVKNKM 259
               GG AL+  S   + +      RR    K +    G      + ++ +
Sbjct: 174 ---LGGTALEHLSKAIIRLEKKDSARRAMLRKHRSRPEGLSFDFTITEDGI 221


>gi|255718721|ref|XP_002555641.1| KLTH0G14014p [Lachancea thermotolerans]
 gi|238937025|emb|CAR25204.1| KLTH0G14014p [Lachancea thermotolerans]
          Length = 333

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 96/251 (38%), Gaps = 32/251 (12%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT--- 94
           Q  I + +  +S+GS  LD  LG GG     I E++G    GKT ++      +Q     
Sbjct: 85  QADIRKRVFAISTGSKQLDSVLG-GGVMTMSITEVFGEFRCGKTQMSHTLCVTAQLPREL 143

Query: 95  ---GGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDM---L 140
               G  A++D E        +++           L+N+  ++    E  +E+T+     
Sbjct: 144 GGGEGKVAYIDTEGTFRPERIKQIAARYDLDPEACLENVSYARALNSEHQMELTEQLGSE 203

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           + SG   ++++DS+ A   R +  G         + + ++Q L +L          +   
Sbjct: 204 LSSGEYRLLIVDSIMA-NFRVDYCGRGE---LNERQQKLNQHLSRLNRISEEYNIAVFMT 259

Query: 201 NQMRMKIGVM----FGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQT 250
           NQ++   G              GG+ L   S+ R+ +R      RV  ++D   +   + 
Sbjct: 260 NQVQSDPGASALFAGADGRKPVGGHVLAHASATRILLRKGRGDERVAKLQDSPDMPEREC 319

Query: 251 RVKVVKNKMAS 261
              + +  +  
Sbjct: 320 VYIIGEKGITD 330


>gi|45201197|ref|NP_986767.1| AGR101Cp [Ashbya gossypii ATCC 10895]
 gi|44986051|gb|AAS54591.1| AGR101Cp [Ashbya gossypii ATCC 10895]
          Length = 333

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 94/249 (37%), Gaps = 32/249 (12%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----- 94
            I + +  +S+GS  LD  LG GG     I E++G    GKT ++      +Q       
Sbjct: 87  DIRKRVFAISTGSKQLDSILG-GGVMTMSITEVFGEFRCGKTQMSHTLCVTAQLPREMGG 145

Query: 95  -GGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITD---MLVR 142
             G  A++D E        +++           L+N+  ++    E  +E+ +     + 
Sbjct: 146 GEGKVAYIDTEGTFRPERIKQIAARYDLDPDACLENVSYARALNSEHQMELVEQLGQELA 205

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG   ++++DS+ A   R +  G         + + ++Q L +L          +   NQ
Sbjct: 206 SGDYRLLIVDSIMA-NFRVDYCGRGE---LNERQQKLNQHLSRLNRVAEEYNVAVFMTNQ 261

Query: 203 MRMKIGVM----FGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRV 252
           ++   G              GG+ L   S+ R+ +R      RV  ++D   +   +   
Sbjct: 262 VQSDPGASALFASADGRKPVGGHVLAHASATRILLRKGRGEERVAKLQDSPDMPEKECVY 321

Query: 253 KVVKNKMAS 261
            + +  +  
Sbjct: 322 VIGEKGITD 330


>gi|194691108|gb|ACF79638.1| unknown [Zea mays]
 gi|195620070|gb|ACG31865.1| DNA repair protein RAD51 [Zea mays]
          Length = 340

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 87/239 (36%), Gaps = 34/239 (14%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            I  V++GS  LD  L  GG   G I EIYG   SGKT L        Q         G 
Sbjct: 99  EIIQVTTGSRELDKIL-EGGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGK 157

Query: 98  CAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAV 146
             ++DAE         ++           L+N+  ++    +    +      ++     
Sbjct: 158 ALYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMIETRF 217

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++V+DS  AL  R +  G    S   M    M++ LR L          +V  NQ+  +
Sbjct: 218 ALMVVDSATALY-RTDFSGRGELSARQMH---MAKFLRSLQKLADEFGVAVVITNQVVAQ 273

Query: 207 IG---VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +    +  G      GGN +   S+ RL +R+           G +   KV+ +   + 
Sbjct: 274 VDGSAMFAGPQFKPIGGNIMAHASTTRLALRKGR---------GEERICKVISSPCLAE 323


>gi|295981640|emb|CBL88083.1| recombinase A [Blastochloris viridis]
          Length = 102

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 75/93 (80%), Positives = 88/93 (94%)

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
           LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAALTP+AEIEG+MG+S  G+QARLMSQ
Sbjct: 10  LLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQ 69

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           ALRKLT +I RS C++VFINQ+RMKIGVMFGSP
Sbjct: 70  ALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSP 102


>gi|242085564|ref|XP_002443207.1| hypothetical protein SORBIDRAFT_08g015360 [Sorghum bicolor]
 gi|241943900|gb|EES17045.1| hypothetical protein SORBIDRAFT_08g015360 [Sorghum bicolor]
          Length = 342

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/213 (23%), Positives = 80/213 (37%), Gaps = 25/213 (11%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            I  +++GS  LD  L  GG   G I EIYG   SGKT L        Q         G 
Sbjct: 101 EIIQLTTGSRELDQIL-DGGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGK 159

Query: 98  CAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAV 146
             ++DAE         ++           L+N+  ++    +    +      ++     
Sbjct: 160 ALYIDAEGTFRPERLLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRF 219

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++V+DS  AL  R +  G    S   M    +++ LR L          +V  NQ+  +
Sbjct: 220 ALMVVDSATALY-RTDFSGRGELSARQMH---LAKFLRSLQKLADEFGVAVVITNQVVAQ 275

Query: 207 IG---VMFGSPETTTGGNALKFYSSVRLDIRRV 236
           +    V  G      GGN +   S+ RL +R+ 
Sbjct: 276 VDGAAVFAGPQIKPIGGNIMAHASTTRLFLRKG 308


>gi|281351151|gb|EFB26735.1| hypothetical protein PANDA_002516 [Ailuropoda melanoleuca]
          Length = 285

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 81/211 (38%), Gaps = 27/211 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +++GS   D  LG GG     I E +G   +GKT L+      +Q       +GG   F+
Sbjct: 69  ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYSGGKIIFI 127

Query: 102 DAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-----VDI 148
           D E+       R +           L N+L ++  T E  +E+ D +            +
Sbjct: 128 DTENTFRPDRLRDIADRFNVDHNAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKL 187

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           ++IDS+ AL          G      + + ++Q L +L          +   NQM    G
Sbjct: 188 LIIDSIMALFR----VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPG 243

Query: 209 VMFG---SPETTTGGNALKFYSSVRLDIRRV 236
                   P+   GG+ L   S+ R+ +R+ 
Sbjct: 244 ATMTFQADPKKPIGGHILAHASTTRISLRKG 274


>gi|15669060|ref|NP_247864.1| DNA repair and recombination protein RadA [Methanocaldococcus
           jannaschii DSM 2661]
 gi|2500109|sp|Q49593|RADA_METJA RecName: Full=DNA repair and recombination protein radA
 gi|1378034|gb|AAC44122.1| RadA [Methanocaldococcus jannaschii]
 gi|1591553|gb|AAB98875.1| DNA repair protein RAD51 (radA) [Methanocaldococcus jannaschii DSM
           2661]
          Length = 352

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 91/250 (36%), Gaps = 36/250 (14%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ--------- 92
            + I  +S+GS  LD  LG GG     + E  G   SGKT +A       Q         
Sbjct: 105 RKNIWKLSTGSKNLDEILG-GGLESQSVTEFAGMFGSGKTQIAHQACVNLQCPERIVADD 163

Query: 93  ------KTGGTCAFVDAEHALDSIYA----RKLGVD----LKNLLISQPDTGEQAL---E 135
                        ++D E              LG+D    L N+ +++    +  +   E
Sbjct: 164 AIKDEILNEPKAVYIDTEGTFRPERIVQMAEALGLDGNEVLNNIFVARAYNSDMQMLYAE 223

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
             + L+R G    +VI      T R E    +G      + + + + +  L        C
Sbjct: 224 NVENLIREGHNIKLVIVDSLTSTFRTEY---IGRGKLAERQQKLGRHMATLNKLADIYNC 280

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249
           +++  NQ+  +   +FG  E   GG+ +   ++ R+ +R      RV  + D   +   +
Sbjct: 281 VVIVTNQVAARPDALFGPSEQAIGGHIVGHAATFRIFLRKAKGDKRVAKLYDSPHLPDAE 340

Query: 250 TRVKVVKNKM 259
              ++ +  +
Sbjct: 341 AMFRITEKGI 350


>gi|304314045|ref|YP_003849192.1| DNA repair and recombination protein RadB [Methanothermobacter
           marburgensis str. Marburg]
 gi|302587504|gb|ADL57879.1| predicted DNA repair and recombination protein RadB
           [Methanothermobacter marburgensis str. Marburg]
          Length = 234

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 95/250 (38%), Gaps = 34/250 (13%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
            +M+LG  G +        +GS  +D  LG GG  +G I + YGP +SGKT +A+    +
Sbjct: 3   TLMELGENGRL-------PTGS-SIDSILG-GGVERGTITQFYGPPASGKTNIAIKLAVE 53

Query: 91  SQKTGGTCAFVDAEHALDSIYARK-----LGVDLKNLLISQPDTGEQALEITDMLV---- 141
           + K      F+D E  +     R+           N+++ +P +  +  E     +    
Sbjct: 54  TSKRDKKTVFIDTEGGISVERIRQVSGSSFERVADNIIVFEPSSFTEQGEAIQKTLNVLK 113

Query: 142 -RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
               +VD+IV+DS  AL    E  G             + + L  L     R    +V  
Sbjct: 114 NHGDSVDLIVLDSAVALYRLKEGNGSNFNV-------DLGRQLFLLLQMARRFDLAVVIT 166

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           NQ+    G       +  GG  L+++S   +++             G +  +   +++  
Sbjct: 167 NQIYSLRGDDGVERVSPVGGTLLRYWSKTIVELEMG-------DRPGERVAILR-RHRNR 218

Query: 261 SPFKQVEFDI 270
               +  F I
Sbjct: 219 PEGLRASFRI 228


>gi|71997295|ref|NP_001023465.1| RADiation sensitivity abnormal/yeast RAD-related family member
           (rad-51) [Caenorhabditis elegans]
 gi|15718273|emb|CAB61038.2| C. elegans protein Y43C5A.6a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 395

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 95/279 (34%), Gaps = 40/279 (14%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K ++     K ++ A+  +Q  +  GA             +  + +GS  LD  LG GG 
Sbjct: 118 KGISDQKAEKIMKEAMKFVQMGFTTGA-----EVHVKRSQLVQIRTGSASLDRLLG-GGI 171

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKLGVD 118
             G I E+YG   +GKT L        Q         G C ++D            +   
Sbjct: 172 ETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGKCMYIDTNATFRPERIIAIAQR 231

Query: 119 --------LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
                   L+N+ +++    E  + +      ++      ++++D   A   R E  G  
Sbjct: 232 YNMDSAHVLENIAVARAYNSEHLMALIIRAGAMMSESRYAVVIVDCATAHF-RNEYTGR- 289

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG----VMFGSPETTTGGNAL 223
                  +   +S  L+ L          ++  NQ+  ++     +     +   GG+ +
Sbjct: 290 --GDLAERQMKLSAFLKCLAKLADEYGVAVIITNQVVAQVDGGASMFQADAKKPIGGHII 347

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
              S+ RL +R+           G     K+V++     
Sbjct: 348 AHMSTTRLYLRKGK---------GENRVAKMVQSPNLPE 377


>gi|289596168|ref|YP_003482864.1| DNA repair and recombination protein RadB [Aciduliprofundum boonei
           T469]
 gi|289533955|gb|ADD08302.1| DNA repair and recombination protein RadB [Aciduliprofundum boonei
           T469]
          Length = 227

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 91/233 (39%), Gaps = 18/233 (7%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++ + SG   +D  L  GGF +G I E+YG   SGKT + L T     K G    ++D E
Sbjct: 1   MDKIKSGCESIDSLLN-GGFERGCITELYGEAGSGKTNICLSTAINVAKEGHYVIYIDTE 59

Query: 105 HALDSIYARKLGVD--LKNLLISQPDTGEQALEITDMLVR---SGAVDIIVIDSVAALTP 159
                 +++  G +   K +L  +     Q  EI +  +         I++I        
Sbjct: 60  GISMERFSQLGGNEDIAKRILFYKVYKFSQQAEIIERAINLVEKRNDIILLIVDSMTEFY 119

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           RAE    + E L   +   ++  L  L S   +    ++  NQ+ M             G
Sbjct: 120 RAE--RGVEEDLSAKKRSSLAWQLSILNSIARKKNIAVIITNQVYMDTTT---KELRPIG 174

Query: 220 GNALKFYSSVRLDIRRVGS-------IKDKDSITGNQTRVKVVKNKMASPFKQ 265
           G+ L   +   + +R++G+       IK +    G + R  +  + +    K+
Sbjct: 175 GHTLHHNAKTIIFLRKIGNGYREALLIKHRSLPEGIKARFIIGSDGLYPEEKE 227


>gi|119489209|ref|XP_001262856.1| meiotic recombination protein dmc1 [Neosartorya fischeri NRRL 181]
 gi|119411014|gb|EAW20959.1| meiotic recombination protein dmc1 [Neosartorya fischeri NRRL 181]
          Length = 357

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 59/271 (21%), Positives = 98/271 (36%), Gaps = 45/271 (16%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K L AA   I         M+L  Q    + +  +S+GS   D  LG GGF    I E+
Sbjct: 100 QKCLPAASGFITA-------MELSHQ---RKRVVKISTGSKQFDSILG-GGFQSMSISEV 148

Query: 73  YGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYA----RKLGVDLK-- 120
           +G    GKT L+      +Q         G  A++D E             + GVD    
Sbjct: 149 FGEFRCGKTQLSHTMSVVAQLPKEMGGADGKVAYIDTEGTFRPERIAQIAERFGVDPDSA 208

Query: 121 --NLLISQPDTGEQALEITDMLVRSG---AVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
             N+  ++    E  LE+ + L R        +++IDS+     R +  G         +
Sbjct: 209 QENIAYARALNSEHQLELLNTLSREFAGGEYRLLIIDSIMNCF-RVDYCGRGE---LADR 264

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM----FGSPETTTGGNALKFYSSVRL 231
            + ++Q L +L          ++  NQ++   G              GG+ L   S+ R+
Sbjct: 265 QQKLNQFLMRLAHMAEEFNVCVLMTNQVQSDPGASALFAGADGRKPVGGHVLAHASTTRV 324

Query: 232 DIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
            +R+           G +   K+  +   SP
Sbjct: 325 LLRKGR---------GEERVAKIQDSPGLSP 346


>gi|162457755|ref|NP_001104918.1| DNA repair protein RAD51 homolog A [Zea mays]
 gi|55976364|sp|Q67EU8|R51A1_MAIZE RecName: Full=DNA repair protein RAD51 homolog A; AltName:
           Full=Rad51-like protein A; Short=RAD51A; AltName:
           Full=ZmRAD51a
 gi|4886752|gb|AAD32029.1|AF079428_1 RAD51 homolog RAD51A [Zea mays]
          Length = 340

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 87/239 (36%), Gaps = 34/239 (14%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            I  V++GS  LD  L  GG   G I EIYG   SGKT L        Q         G 
Sbjct: 99  EIIQVTTGSRELDKIL-EGGIETGSITEIYGEFRSGKTQLCHTPCVTCQLPLDQGGGEGK 157

Query: 98  CAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAV 146
             ++DAE         ++           L+N+  ++    +    +      ++     
Sbjct: 158 ALYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMIETRF 217

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++V+DS  AL  R +  G    S   M    M++ LR L          +V  NQ+  +
Sbjct: 218 ALMVVDSATALY-RTDFSGRGELSARQMH---MAKFLRSLQKLADEFGVAVVITNQVVAQ 273

Query: 207 IG---VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +    +  G      GGN +   S+ RL +R+           G +   KV+ +   + 
Sbjct: 274 VDGSAMFAGPQFKPIGGNIMAHASTTRLALRKGR---------GEERICKVISSPCLAE 323


>gi|149692472|ref|XP_001503572.1| PREDICTED: similar to DNA repair protein RAD51 homolog 1 [Equus
           caballus]
          Length = 339

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 88/246 (35%), Gaps = 31/246 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              I  +++GS  LD  L  GG   G I E++G   +GKT +        Q         
Sbjct: 96  RSEIIQITTGSKELDKLL-QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGE 154

Query: 96  GTCAFVDAEHALDSIY----ARKLGVDLKNLLISQPD-------TGEQALEITDMLVRSG 144
           G   ++D E           A + G+   ++L +             Q L     ++   
Sbjct: 155 GKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMVES 214

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  AL  R +  G    S   M    +++ LR L          +V  NQ+ 
Sbjct: 215 RYALLIVDSATALY-RTDYSGRGELSARQMH---LARFLRMLLRLADEFGVAVVITNQVV 270

Query: 205 MKIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
            ++    +    P+   GGN +   S+ RL +R      R+  I D   +   +    + 
Sbjct: 271 AQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 330

Query: 256 KNKMAS 261
            + +  
Sbjct: 331 ADGVGD 336


>gi|11498598|ref|NP_069826.1| DNA repair and recombination protein RadA [Archaeoglobus fulgidus
           DSM 4304]
 gi|3914552|sp|O29269|RADA_ARCFU RecName: Full=DNA repair and recombination protein radA
 gi|2649602|gb|AAB90248.1| DNA repair protein RAD51 (radA) [Archaeoglobus fulgidus DSM 4304]
          Length = 337

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 90/249 (36%), Gaps = 31/249 (12%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
                ++ +++GS  LD  LG GG     I E +G   SGKT +        Q       
Sbjct: 82  ERRRSVKKITTGSKDLDELLG-GGVETQAITEFFGEFGSGKTQICHQLAVNVQLPEDEGG 140

Query: 94  TGGTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQAL-------EITD 138
             G+   +D E+        ++           LKN+ ++Q       +       E+ +
Sbjct: 141 LEGSVIIIDTENTFRPERIIQMAEAKGLDGNEVLKNIYVAQAYNSNHQMLLVDNAKELAE 200

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            L + G    ++I        RAE  G         + + +++ L  L          +V
Sbjct: 201 KLKKEGRPVRLIIVDSLMSHFRAEYVGR---GTLADRQQKLNRHLHDLMKFGELYNAAIV 257

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRV 252
             NQ+  +  V+FG P    GG+ +   ++ R+ ++      R+  + D   +   +   
Sbjct: 258 VTNQVMARPDVLFGDPTKPVGGHIVAHTATFRIYLKKGKDDLRIARLIDSPHLPEGEAIF 317

Query: 253 KVVKNKMAS 261
           +V +  +  
Sbjct: 318 RVTERGIED 326


>gi|1710063|sp|P49987|RECA_STRSL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|153789|gb|AAA26965.1| recombination and repair protein [Streptococcus salivarius]
          Length = 104

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 64/103 (62%), Positives = 87/103 (84%)

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YAR LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAA  PRAEI+GD G+S
Sbjct: 2   YARALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAAFVPRAEIDGDSGDS 61

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
             G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+G+MFG+
Sbjct: 62  HVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGN 104


>gi|325958345|ref|YP_004289811.1| DNA repair and recombination protein radB [Methanobacterium sp.
           AL-21]
 gi|325329777|gb|ADZ08839.1| DNA repair and recombination protein radB [Methanobacterium sp.
           AL-21]
          Length = 232

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/238 (21%), Positives = 102/238 (42%), Gaps = 29/238 (12%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99
           S  +  + + + S  LD  +G GG  KG + + YGP  SGKT +AL  + +  + G    
Sbjct: 5   SELDETKKIPTDSP-LDNLMG-GGIEKGCLTQFYGPPGSGKTNIALQLLVRCAQNGDKAI 62

Query: 100 FVDAEHALDSIYARKLGVD-----LKNLLISQPDTGEQALEITDMLVR-----SGAVDII 149
           F+D E  L     +++  +      +N++I +P T ++ +++   +          V++I
Sbjct: 63  FIDTEGGLSIERVKQISNNEFTSFAENIIIFEPTTFKEQIDVIKKIENLLESKKECVELI 122

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           ++DS  AL    E     G+S      R + Q +  L+    +    ++  N +      
Sbjct: 123 ILDSAVALYRLKE-----GDST--QINRELGQQMALLSRIARKYDVAVLITNHVYSVFDG 175

Query: 210 MFGSPETTTGGNALKFYSSVRLDI-------RRVGSIK-DKDSITGNQTRVKVVKNKM 259
                    GG  LK++S V +++        R  ++K  +    G +TR ++V   +
Sbjct: 176 DGIIE--PVGGTILKYWSKVVVELARSNGLGERSATLKRHRSRPEGLRTRFRIVDCGI 231


>gi|294494932|ref|YP_003541425.1| DNA repair and recombination protein RadA [Methanohalophilus mahii
           DSM 5219]
 gi|292665931|gb|ADE35780.1| DNA repair and recombination protein RadA [Methanohalophilus mahii
           DSM 5219]
          Length = 325

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 84/245 (34%), Gaps = 40/245 (16%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGT 97
            +  + +G    D  +G GG     I E+YG   SGKT +A      +Q         G+
Sbjct: 78  EVGKLRTGCEEFDELMG-GGIETQSITEMYGEFGSGKTQIAHQLAVNTQLPKEMGGLDGS 136

Query: 98  CAFVDAEHALDSIYARKLGVDLKN--------------LLISQPDTGEQAL-------EI 136
              +D E+         +   L +              + +++       +       E+
Sbjct: 137 VIIIDTENTFRPERIEHMVAGLSHKFEQDFDPAEFLKNIHVARAYNSNHQILLVDAATEM 196

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            + L  +     +VI        RAE  G         + + +++ L  L      +   
Sbjct: 197 ANKLKNTDKPVRLVIVDSLTAHFRAEYVGR---GTLADRQQKLNKHLHDLQRFGDLNNAS 253

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           ++  NQ+  K    FG P    GG+ L   ++ RL IR+           G++  VK+V 
Sbjct: 254 VIVTNQVMSKPDAFFGDPTRPIGGHILGHTATFRLYIRKSK---------GDKRIVKLVD 304

Query: 257 NKMAS 261
           +    
Sbjct: 305 SPCLP 309


>gi|34395788|sp|Q8PZN5|RADA_METMA RecName: Full=DNA repair and recombination protein radA
          Length = 325

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 82/221 (37%), Gaps = 33/221 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK------TGGTCAFV 101
           +++G    D  +G GG     I E+YG   SGKT +A       Q        GG+   +
Sbjct: 82  LTTGCTEFDEMMG-GGIETQAITELYGEFGSGKTQVAHQLAVNVQMDREHGGLGGSVIII 140

Query: 102 DAEHALDSIYARKLGVDL--------------KNLLISQPDTGEQALEITDMLV------ 141
           D E+        ++   L              +N+ +++       + + D  V      
Sbjct: 141 DTENTFRPERITQMVNGLSEKYGMELNPEEFLQNIHVARAYNSNHQILLVDSAVDLANEL 200

Query: 142 --RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
                 V ++++DS+ A   RAE  G         + + +++ +  L          +V 
Sbjct: 201 KEMGKPVRLLIVDSLMAHF-RAEYVGR---GTLADRQQKLNKHMHGLLRFGDLFNACVVV 256

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
            NQ+  K    FG P    GG+ +   ++ RL +R+    K
Sbjct: 257 TNQVMAKPDAFFGDPTRPIGGHIVGHTATFRLYLRKSKGEK 297


>gi|242050664|ref|XP_002463076.1| hypothetical protein SORBIDRAFT_02g037320 [Sorghum bicolor]
 gi|241926453|gb|EER99597.1| hypothetical protein SORBIDRAFT_02g037320 [Sorghum bicolor]
          Length = 344

 Score = 81.4 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 87/239 (36%), Gaps = 34/239 (14%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            I  V++GS  LD  L  GG   G I EIYG   SGKT L        Q         G 
Sbjct: 103 EIIQVTTGSRELDKIL-EGGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGK 161

Query: 98  CAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAV 146
             ++DAE         ++           L+N+  ++    +    +      ++     
Sbjct: 162 ALYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMIETRF 221

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++V+DS  AL  R +  G    S   M    M++ LR L          +V  NQ+  +
Sbjct: 222 ALMVVDSATALY-RTDFSGRGELSARQMH---MAKFLRSLQKLADEFGVAVVITNQVVAQ 277

Query: 207 IG---VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +    +  G      GGN +   S+ RL +R+           G +   KV+ +   + 
Sbjct: 278 VDGSAMFAGPQFKPIGGNIMAHASTTRLALRKGR---------GEERICKVISSPCLAE 327


>gi|30578205|gb|AAP35099.1|AF485820_1 DMC1 [Entamoeba histolytica]
          Length = 334

 Score = 81.4 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 100/272 (36%), Gaps = 31/272 (11%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           ++  +  + +++   + +   +       +  +++GS   D  LG GG     + E++G 
Sbjct: 65  VDKIMEAVSKIFPTHSFISATTSLERRANVIKITTGSSQFDQLLG-GGIETMSVTEMFGE 123

Query: 76  ESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKLGVD--------LKN 121
             +GKT L       +Q         G  A++D E         ++           L N
Sbjct: 124 FRTGKTQLCHTLAVTTQLPSHLKGGNGKVAYIDTEGTFRPERIAQIAERFGVDQTAVLDN 183

Query: 122 LLISQPDTGEQALEITDMLVRSGAVD---IIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +LI++  T EQ  ++   +    A D   +++IDSV +L          G      + + 
Sbjct: 184 ILIARAYTHEQQFDLLIEVAARMAEDHFRMLIIDSVTSLFR----VDFSGRGELSERQQK 239

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIG---VMFGSPETTTGGNALKFYSSVRLDIRR 235
           + + + KL          +V  NQ+    G   +    P+   GG+ +   S+ RL +R+
Sbjct: 240 LGKMMNKLIKISEEFNVAVVITNQVMSDPGGGAMFVVDPKKPIGGHVIAHASTTRLYLRK 299

Query: 236 VG------SIKDKDSITGNQTRVKVVKNKMAS 261
                    I D  ++   +    +    +  
Sbjct: 300 GKGEQRIVKIYDSPNLPEAEATFAIDTGGIID 331


>gi|294657730|ref|XP_460030.2| DEHA2E16742p [Debaryomyces hansenii CBS767]
 gi|199432908|emb|CAG88286.2| DEHA2E16742p [Debaryomyces hansenii]
          Length = 330

 Score = 81.4 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 57/283 (20%), Positives = 99/283 (34%), Gaps = 40/283 (14%)

Query: 12  KSKAL-EAALSQIQRVYGKGAIMQLG-----SQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           K K L E  + +I+   GK  +M  G      Q  +      +S+GS  LD  LG GG  
Sbjct: 53  KIKGLSEVKVEKIKEAAGK--LMHSGFIPATVQAELRSRAFTLSTGSKQLDDVLG-GGVS 109

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKLGVD- 118
              I E++G    GKT L       +Q         G  A++D E        R +    
Sbjct: 110 SMSITEVFGEFRCGKTQLCHTLCVTAQLPKEMGGSEGKVAYIDTEGTFRPDRIRSIAERF 169

Query: 119 -------LKNLLISQPDTGEQALEITDM---LVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
                  L+N+  ++    E  +E+ +        G   ++V+DS+ A           G
Sbjct: 170 QVDADACLENISYARALNSEHQMELAEQLGLQFADGTYRLLVVDSIMACFR----VDYSG 225

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE----TTTGGNALK 224
                 + + ++Q L  L          +   NQ++   G              GG+ L 
Sbjct: 226 RGELNDRQQKLNQHLSSLIRLAEDYNVAVFLTNQVQSDPGASSLFAAADGRKPVGGHILA 285

Query: 225 FYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
             S+ R+ +R      RV  ++D   +   +    + +  +  
Sbjct: 286 HASATRILLRKGRGEERVAKLQDSPDMAEKECVYVIGEGGIKD 328


>gi|126723348|ref|NP_001075493.1| DNA repair protein RAD51 homolog 1 [Oryctolagus cuniculus]
 gi|6225914|sp|O77507|RAD51_RABIT RecName: Full=DNA repair protein RAD51 homolog 1
 gi|3387769|gb|AAC28561.1| Rad51 [Oryctolagus cuniculus]
          Length = 339

 Score = 81.4 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 88/246 (35%), Gaps = 31/246 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              I  +++GS  LD  L  GG   G I E++G   +GKT +        Q         
Sbjct: 96  RSEIIQITTGSKELDKLL-QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGE 154

Query: 96  GTCAFVDAEHALDSIY----ARKLGVDLKNLLISQPD-------TGEQALEITDMLVRSG 144
           G   ++D E           A + G+   ++L +             Q L     ++   
Sbjct: 155 GKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMVES 214

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  AL  R +  G    S   M    +++ LR L          +V  NQ+ 
Sbjct: 215 RYALLIVDSATALY-RTDYSGRGELSARQMH---LARFLRMLLRLADEFGVTVVITNQVV 270

Query: 205 MKIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
            ++    +    P+   GGN +   S+ RL +R      R+  I D   +   +    + 
Sbjct: 271 AQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 330

Query: 256 KNKMAS 261
            + +  
Sbjct: 331 ADGVGD 336


>gi|6320942|ref|NP_011021.1| Rad51p [Saccharomyces cerevisiae S288c]
 gi|131783|sp|P25454|RAD51_YEAST RecName: Full=DNA repair protein RAD51
 gi|4275|emb|CAA45563.1| RAD51 [Saccharomyces cerevisiae]
 gi|172339|gb|AAA34948.1| RAD51 protein [Saccharomyces cerevisiae]
 gi|218469|dbj|BAA00913.1| Rad51 protein [Saccharomyces cerevisiae]
 gi|603333|gb|AAB64650.1| Rad51p: RecA-like protein [Saccharomyces cerevisiae]
 gi|190405660|gb|EDV08927.1| DNA repair protein RAD51 [Saccharomyces cerevisiae RM11-1a]
 gi|207345902|gb|EDZ72571.1| YER095Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|259146020|emb|CAY79280.1| Rad51p [Saccharomyces cerevisiae EC1118]
 gi|285811729|tpg|DAA07757.1| TPA: Rad51p [Saccharomyces cerevisiae S288c]
 gi|323333774|gb|EGA75165.1| Rad51p [Saccharomyces cerevisiae AWRI796]
 gi|323355292|gb|EGA87117.1| Rad51p [Saccharomyces cerevisiae VL3]
          Length = 400

 Score = 81.4 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 93/244 (38%), Gaps = 25/244 (10%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  LG GG   G I E++G   +GK+ L        Q         G C +
Sbjct: 159 CLTTGSKNLDTLLG-GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLY 217

Query: 101 VDAEHALDSIY----ARKLGVDLK----NLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     +     A++ G+D      N+  ++    +  L +      ++      +I
Sbjct: 218 IDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLI 277

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DSV AL  R +  G    S   M      +AL++L      +  +   +         
Sbjct: 278 VVDSVMALY-RTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMA 336

Query: 210 MFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMASPF 263
               P+   GGN +   S+ RL  +      R+  + D   +   +    + ++ +  P 
Sbjct: 337 FNPDPKKPIGGNIMAHSSTTRLGFKKGKGCQRLCKVVDSPCLPEAECVFAIYEDGVGDPR 396

Query: 264 KQVE 267
           ++ E
Sbjct: 397 EEDE 400


>gi|50978688|ref|NP_001003043.1| DNA repair protein RAD51 homolog 1 [Canis lupus familiaris]
 gi|75047603|sp|Q8MKI8|RAD51_CANFA RecName: Full=DNA repair protein RAD51 homolog 1; AltName:
           Full=cRad51
 gi|20387091|dbj|BAB91246.1| Rad51 [Canis lupus familiaris]
          Length = 339

 Score = 81.4 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 88/246 (35%), Gaps = 31/246 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              I  +++GS  LD  L  GG   G I E++G   +GKT +        Q         
Sbjct: 96  RSEIIQITTGSKELDKLL-QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGE 154

Query: 96  GTCAFVDAEHALDSIY----ARKLGVDLKNLLISQPD-------TGEQALEITDMLVRSG 144
           G   ++D E           A + G+   ++L +             Q L     ++   
Sbjct: 155 GKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMVES 214

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  AL  R +  G    S   M    +++ LR L          +V  NQ+ 
Sbjct: 215 RYALLIVDSATALY-RTDYSGRGELSARQMH---LARFLRMLLRLADEFGVAVVITNQVV 270

Query: 205 MKIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
            ++    +    P+   GGN +   S+ RL +R      R+  I D   +   +    + 
Sbjct: 271 AQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 330

Query: 256 KNKMAS 261
            + +  
Sbjct: 331 ADGVGD 336


>gi|162457934|ref|NP_001104919.1| DNA repair protein RAD51 homolog B [Zea mays]
 gi|55976630|sp|Q9XED7|R51A2_MAIZE RecName: Full=DNA repair protein RAD51 homolog B; AltName:
           Full=Rad51-like protein B; Short=RAD51B; AltName:
           Full=ZmRAD51b
 gi|4886754|gb|AAD32030.1|AF079429_1 RAD51 homolog RAD51B [Zea mays]
 gi|223945143|gb|ACN26655.1| unknown [Zea mays]
          Length = 340

 Score = 81.4 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/239 (21%), Positives = 87/239 (36%), Gaps = 34/239 (14%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            I  +++GS  LD  L  GG   G I E+YG   SGKT L        Q         G 
Sbjct: 99  EIIQLTTGSRELDQIL-DGGIETGSITEMYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGK 157

Query: 98  CAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAV 146
             ++DAE         ++           L+N+  ++    +    +      ++     
Sbjct: 158 ALYIDAEGTFRPQRILQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRF 217

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++V+DS  AL  R +  G    S   M    +++ LR L          +V  NQ+  +
Sbjct: 218 ALMVVDSATALY-RTDFSGRGELSARQMH---LAKFLRSLQKLADEFGVAVVITNQVVAQ 273

Query: 207 IG---VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +    +  G      GGN +   S+ RL +R+           G +   KV+ +   + 
Sbjct: 274 VDGAAMFAGPQIKPIGGNIMAHASTTRLFLRKGR---------GEERICKVISSPCLAE 323


>gi|16082126|ref|NP_394563.1| DNA repair and recombination protein RadA [Thermoplasma acidophilum
           DSM 1728]
 gi|13878691|sp|Q9HJ68|RADA_THEAC RecName: Full=DNA repair and recombination protein radA
 gi|10640417|emb|CAC12231.1| probable DNA repair protein Rad51 (RadA) [Thermoplasma acidophilum]
          Length = 323

 Score = 81.4 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 85/215 (39%), Gaps = 22/215 (10%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQKTGG 96
              + I+ +++GS  LD  LG GG     I E +G   SGKT +           ++ GG
Sbjct: 82  ERRKSIQKLTTGSKNLDDLLG-GGLETQAITEFFGEFGSGKTQIMHQLAVNCTLPKEKGG 140

Query: 97  ---TCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQAL---EITDMLVR 142
                  +D E+        ++           LK + +++       +   E      +
Sbjct: 141 FDSDVMMIDTENTFRPERIIQMAKSKGADPDETLKRIHVARAYNSHHQILLAEKAQDTAK 200

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
              + ++++DS+ A   R+E  G         + +L+++ +  L    +    ++   NQ
Sbjct: 201 EYNIKLLIVDSLTAHF-RSEYVGR---GSLAERQQLLNKHMHDLLRFGTIYNAVIAVTNQ 256

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           +  +  V FG P    GGN +   ++ R+ +R+  
Sbjct: 257 VSARPDVFFGDPMAPIGGNIVGHTATFRIYLRKSK 291


>gi|114051383|ref|NP_001039644.1| DNA repair protein RAD51 homolog 1 [Bos taurus]
 gi|301754892|ref|XP_002913265.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Ailuropoda
           melanoleuca]
 gi|116255982|sp|Q2KJ94|RAD51_BOVIN RecName: Full=DNA repair protein RAD51 homolog 1
 gi|86821651|gb|AAI05459.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [Bos taurus]
 gi|296483320|gb|DAA25435.1| DNA repair protein RAD51 homolog 1 [Bos taurus]
          Length = 339

 Score = 81.4 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 88/246 (35%), Gaps = 31/246 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              I  +++GS  LD  L  GG   G I E++G   +GKT +        Q         
Sbjct: 96  RSEIIQITTGSKELDKLL-QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGE 154

Query: 96  GTCAFVDAEHALDSIY----ARKLGVDLKNLLISQPD-------TGEQALEITDMLVRSG 144
           G   ++D E           A + G+   ++L +             Q L     ++   
Sbjct: 155 GKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMVES 214

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  AL  R +  G    S   M    +++ LR L          +V  NQ+ 
Sbjct: 215 RYALLIVDSATALY-RTDYSGRGELSARQMH---LARFLRMLLRLADEFGVAVVITNQVV 270

Query: 205 MKIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
            ++    +    P+   GGN +   S+ RL +R      R+  I D   +   +    + 
Sbjct: 271 AQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 330

Query: 256 KNKMAS 261
            + +  
Sbjct: 331 ADGVGD 336


>gi|222154119|gb|ACM47239.1| RAD51 recombination protein [Triticum aestivum]
          Length = 343

 Score = 81.4 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 88/245 (35%), Gaps = 25/245 (10%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            I  V++GS  LD  L  GG   G I E+YG   SGKT L        Q         G 
Sbjct: 102 EIIQVTTGSRELDRIL-EGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGK 160

Query: 98  CAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAV 146
             ++DAE         ++           L+N+  ++    +    +      ++     
Sbjct: 161 ALYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRF 220

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++VIDS  AL  R +  G    S   M    +++ LR L          +V  NQ+  +
Sbjct: 221 ALMVIDSATALY-RTDFSGRGELSARQMH---LAKFLRSLQKLADEFGVAVVISNQVVAQ 276

Query: 207 IG---VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           +    +  G      GGN +   S+ RL +R+  + +    +  +    +       SP 
Sbjct: 277 VDGGAMFAGPQIKPIGGNIMAHASTTRLYLRKGRAEERICKVVSSPCLAEAEARFQISPE 336

Query: 264 KQVEF 268
              + 
Sbjct: 337 GVTDV 341


>gi|6755276|ref|NP_035364.1| DNA repair protein RAD51 homolog 1 [Mus musculus]
 gi|585772|sp|Q08297|RAD51_MOUSE RecName: Full=DNA repair protein RAD51 homolog 1; AltName:
           Full=RAD51 homolog A
 gi|397831|dbj|BAA02961.1| MmRad51 [Mus musculus]
 gi|407349|dbj|BAA02718.1| Rad51 protein [Mus musculus]
 gi|12847236|dbj|BAB27489.1| unnamed protein product [Mus musculus]
 gi|20073272|gb|AAH27384.1| RAD51 homolog (S. cerevisiae) [Mus musculus]
 gi|26345412|dbj|BAC36357.1| unnamed protein product [Mus musculus]
 gi|74185375|dbj|BAE30162.1| unnamed protein product [Mus musculus]
 gi|74185412|dbj|BAE30179.1| unnamed protein product [Mus musculus]
 gi|126540733|emb|CAM45951.1| RAD51 homolog (S. cerevisiae) [Mus musculus]
 gi|148695989|gb|EDL27936.1| RAD51 homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
 gi|1093114|prf||2102359A RAD51-like protein
          Length = 339

 Score = 81.4 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 88/246 (35%), Gaps = 31/246 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              I  +++GS  LD  L  GG   G I E++G   +GKT +        Q         
Sbjct: 96  RSEIIQITTGSKELDKLL-QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGE 154

Query: 96  GTCAFVDAEHALDSIY----ARKLGVDLKNLLISQPD-------TGEQALEITDMLVRSG 144
           G   ++D E           A + G+   ++L +             Q L     ++   
Sbjct: 155 GKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMVES 214

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  AL  R +  G    S   M    +++ LR L          +V  NQ+ 
Sbjct: 215 RYALLIVDSATALY-RTDYSGRGELSARQMH---LARFLRMLLRLADEFGVAVVITNQVV 270

Query: 205 MKIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
            ++    +    P+   GGN +   S+ RL +R      R+  I D   +   +    + 
Sbjct: 271 AQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 330

Query: 256 KNKMAS 261
            + +  
Sbjct: 331 ADGVGD 336


>gi|13541288|ref|NP_110976.1| DNA repair and recombination protein RadA [Thermoplasma volcanium
           GSS1]
 gi|20139594|sp|Q97BJ9|RADA_THEVO RecName: Full=DNA repair and recombination protein radA
 gi|14324671|dbj|BAB59598.1| cell cycle progression protein DMC1 [Thermoplasma volcanium GSS1]
          Length = 323

 Score = 81.4 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 85/215 (39%), Gaps = 22/215 (10%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQKTGG 96
              + I+ +++GS  LD  LG GG     I E +G   SGKT +           ++ GG
Sbjct: 82  ERRKTIQKLTTGSKNLDDLLG-GGLETQAITEFFGEFGSGKTQIMHQLAVNCTMPKEKGG 140

Query: 97  ---TCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQAL---EITDMLVR 142
                  +D E+        ++           LK + +++       +   E      +
Sbjct: 141 FDSDVMMIDTENTFRPERIIQMAKSKGLDPDETLKRIHVARAYNSHHQILLAEKAQETAK 200

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
              + ++++DS+ A   R+E  G         + +L+++ +  L    +    ++   NQ
Sbjct: 201 EFNIRLLIVDSLTAHF-RSEYVGR---GSLAERQQLLNKHMHDLLRFGTIYNAVIAVTNQ 256

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           +  +  V FG P    GGN +   ++ R+ +R+  
Sbjct: 257 VSARPDVFFGDPMAPIGGNIVGHTATFRVYLRKSK 291


>gi|151944813|gb|EDN63072.1| radiation sensitive protein [Saccharomyces cerevisiae YJM789]
 gi|256271447|gb|EEU06501.1| Rad51p [Saccharomyces cerevisiae JAY291]
 gi|323305264|gb|EGA59011.1| Rad51p [Saccharomyces cerevisiae FostersB]
          Length = 400

 Score = 81.4 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 93/244 (38%), Gaps = 25/244 (10%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  LG GG   G I E++G   +GK+ L        Q         G C +
Sbjct: 159 CLTTGSKNLDTLLG-GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLY 217

Query: 101 VDAEHALDSIY----ARKLGVDLK----NLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     +     A++ G+D      N+  ++    +  L +      ++      +I
Sbjct: 218 IDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLI 277

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DSV AL  R +  G    S   M      +AL++L      +  +   +         
Sbjct: 278 VVDSVMALY-RTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMA 336

Query: 210 MFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMASPF 263
               P+   GGN +   S+ RL  +      R+  + D   +   +    + ++ +  P 
Sbjct: 337 FNPDPKKPIGGNIMAHSSTTRLGFKKGKGCQRLCKVVDSPCLPEAECVFAIYEDGVGDPR 396

Query: 264 KQVE 267
           ++ E
Sbjct: 397 EEDE 400


>gi|157822405|ref|NP_001102674.1| DNA repair protein RAD51 homolog 1 [Rattus norvegicus]
 gi|149022997|gb|EDL79891.1| similar to DNA repair protein RAD51 homolog 1 (predicted) [Rattus
           norvegicus]
 gi|197246432|gb|AAI68875.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [Rattus
           norvegicus]
          Length = 339

 Score = 81.4 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 88/246 (35%), Gaps = 31/246 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              I  +++GS  LD  L  GG   G I E++G   +GKT +        Q         
Sbjct: 96  RSEIIQITTGSKELDKLL-QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGE 154

Query: 96  GTCAFVDAEHALDSIY----ARKLGVDLKNLLISQPD-------TGEQALEITDMLVRSG 144
           G   ++D E           A + G+   ++L +             Q L     ++   
Sbjct: 155 GKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMVES 214

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  AL  R +  G    S   M    +++ LR L          +V  NQ+ 
Sbjct: 215 RYALLIVDSATALY-RTDYSGRGELSARQMH---LARFLRMLLRLADEFGVAVVITNQVV 270

Query: 205 MKIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
            ++    +    P+   GGN +   S+ RL +R      R+  I D   +   +    + 
Sbjct: 271 AQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 330

Query: 256 KNKMAS 261
            + +  
Sbjct: 331 ADGVGD 336


>gi|6321027|ref|NP_011106.1| Dmc1p [Saccharomyces cerevisiae S288c]
 gi|118683|sp|P25453|DMC1_YEAST RecName: Full=Meiotic recombination protein DMC1
 gi|171401|gb|AAA34571.1| Dmc1 [Saccharomyces cerevisiae]
 gi|287608|dbj|BAA01637.1| hypothetical protein [Saccharomyces cerevisiae]
 gi|603420|gb|AAB64706.1| Dmc1p: DNA repair protein [Saccharomyces cerevisiae]
 gi|151944897|gb|EDN63156.1| conserved protein [Saccharomyces cerevisiae YJM789]
 gi|190405735|gb|EDV09002.1| meiotic recombination protein DMC1 [Saccharomyces cerevisiae
           RM11-1a]
 gi|259146109|emb|CAY79369.1| Dmc1p [Saccharomyces cerevisiae EC1118]
 gi|285811814|tpg|DAA07842.1| TPA: Dmc1p [Saccharomyces cerevisiae S288c]
 gi|446776|prf||1912300A ISC2 gene
          Length = 334

 Score = 81.4 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 61/283 (21%), Positives = 110/283 (38%), Gaps = 40/283 (14%)

Query: 12  KSKAL-EAALSQIQRVYGKGAIMQLG-----SQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           K K L E  + +I+   GK  I+Q+G      Q  I + +  +S+GS  LD  LG GG  
Sbjct: 56  KIKGLSEVKVEKIKEAAGK--IIQVGFIPATVQLDIRQRVYSLSTGSKQLDSILG-GGIM 112

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKLGVDL 119
              I E++G    GKT ++      +Q         G  A++D E        +++    
Sbjct: 113 TMSITEVFGEFRCGKTQMSHTLCVTTQLPREMGGGEGKVAYIDTEGTFRPERIKQIAEGY 172

Query: 120 K--------NLLISQPDTGEQALEITDM---LVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
           +        N+  ++    E  +E+ +     + SG   +IV+DS+ A   R +  G   
Sbjct: 173 ELDPESCLANVSYARALNSEHQMELVEQLGEELSSGDYRLIVVDSIMA-NFRVDYCGRGE 231

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM----FGSPETTTGGNALK 224
            S    + + ++Q L KL          +   NQ++   G              GG+ L 
Sbjct: 232 LS---ERQQKLNQHLFKLNRLAEEFNVAVFLTNQVQSDPGASALFASADGRKPIGGHVLA 288

Query: 225 FYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
             S+ R+ +R      RV  ++D   +   +    + +  +  
Sbjct: 289 HASATRILLRKGRGDERVAKLQDSPDMPEKECVYVIGEKGITD 331


>gi|323309417|gb|EGA62634.1| Rad51p [Saccharomyces cerevisiae FostersO]
          Length = 400

 Score = 81.4 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 93/244 (38%), Gaps = 25/244 (10%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  LG GG   G I E++G   +GK+ L        Q         G C +
Sbjct: 159 CLTTGSKNLDTLLG-GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLY 217

Query: 101 VDAEHALDSIY----ARKLGVDLK----NLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     +     A++ G+D      N+  ++    +  L +      ++      +I
Sbjct: 218 IDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLI 277

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DSV AL  R +  G    S   M      +AL++L      +  +   +         
Sbjct: 278 VVDSVMALY-RTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMA 336

Query: 210 MFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMASPF 263
               P+   GGN +   S+ RL  +      R+  + D   +   +    + ++ +  P 
Sbjct: 337 FNPDPKKPIGGNIMAHSSTTRLGFKKGKGCQRLCKVVDSPCLPEAECVFAIYEDGVGDPR 396

Query: 264 KQVE 267
           ++ E
Sbjct: 397 EEDE 400


>gi|311698176|gb|ADQ00382.1| Dmc1 [Pneumocystis jirovecii]
          Length = 337

 Score = 81.4 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 88/250 (35%), Gaps = 32/250 (12%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---- 92
              S    +  +S+GS   D  LG GG     I E++G    GKT ++       Q    
Sbjct: 89  EVSSFRRRVNYISTGSKQFDAMLG-GGIQSMSITEVFGEFRCGKTQISHTMCVTCQLPRE 147

Query: 93  --KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVR 142
                G  A++D E        + +           + N+L+ +    E  +++ + +  
Sbjct: 148 MGGAEGKAAYLDTEGTFRPDRIKSIAARFGVDAEQAMNNILVGRAFNSEHQMDLINKMCT 207

Query: 143 SGAVD----IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
             + D    ++++DS+ AL          G      + + ++  L +L          + 
Sbjct: 208 IFSEDGRYRLLIVDSIMALFR----VDYSGRGELSERQQKLNVMLSRLNRIAEEYNIAVF 263

Query: 199 FINQMRMKIGVMFG---SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249
             NQ++   G       +     GG+ L   S+ R+ +R      RV  I+D   +   +
Sbjct: 264 LTNQVQADPGATLMFASNDRKPVGGHVLAHASATRILLRKGRGEERVAKIQDSPDMPEAE 323

Query: 250 TRVKVVKNKM 259
               +    +
Sbjct: 324 CTYTIKAGGI 333


>gi|2500103|sp|P70099|RAD51_CRIGR RecName: Full=DNA repair protein RAD51 homolog 1
 gi|1552258|emb|CAA69384.1| rad51 [Cricetulus griseus]
          Length = 339

 Score = 81.4 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 89/257 (34%), Gaps = 34/257 (13%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              I  +++GS  LD  L  GG   G I E++G   +GKT +        Q         
Sbjct: 96  RSEIIQITTGSKELDKLL-QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGE 154

Query: 96  GTCAFVDAEHALDSIY----ARKLGVDLKNLLISQPD-------TGEQALEITDMLVRSG 144
           G   ++D E           A + G+   ++L +             Q L     ++   
Sbjct: 155 GKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMVES 214

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  AL  R +  G    S   M    +++ LR L          +V  NQ+ 
Sbjct: 215 RYALLIVDSATALY-RTDYSGRGELSARQMH---LARFLRMLLRLADEFGVAVVITNQVV 270

Query: 205 MKIG---VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
            ++    +    P+   GGN +   S+ RL +R+           G     KV  +    
Sbjct: 271 AQVDGAAMFTADPKKPIGGNIIAHASTTRLYLRKGR---------GETRICKVYDSPCLP 321

Query: 262 PFKQVEFDIMYGEGISF 278
             + +      G G + 
Sbjct: 322 EAEAMFAINADGVGDAK 338


>gi|288932519|ref|YP_003436579.1| DNA repair and recombination protein RadB [Ferroglobus placidus DSM
           10642]
 gi|288894767|gb|ADC66304.1| DNA repair and recombination protein RadB [Ferroglobus placidus DSM
           10642]
          Length = 220

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 88/229 (38%), Gaps = 21/229 (9%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++ + +GS  +D  LG GG   G + +IYG   SGKT+L L     + K  G   ++D E
Sbjct: 1   MKKLPTGSSCIDSLLG-GGVETGTLTQIYGVSGSGKTSLCLMLTYNTVKRFGKAVYIDTE 59

Query: 105 HALDSIYARKLGVDLKNLLISQPDT------GEQALEITDMLVRSGAVDIIVIDSVAALT 158
             L      ++  D   L                A+     L     + ++VIDS+ +L 
Sbjct: 60  -GLSPERVNQIFEDKSVLKDVYIYDVYDFKMQSVAVREVAKLCEREEIVLVVIDSLTSLY 118

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
            R+E+E +  E     +  L+SQ    L     +    +VF NQM   +       +   
Sbjct: 119 -RSELEDE--EKQIKAKRELISQLTL-LLGVARKHDLAVVFTNQMFTDV---RNGIDKPL 171

Query: 219 GGNALKFYSSVRLDIRRVG------SIKDKDSITGNQTRVKVVKNKMAS 261
           GG ++   S   + + ++        IK +    G     ++    +  
Sbjct: 172 GGPSVDHLSKTIISLEKIDGKRIARLIKHRSREEGAFCEFRLTDKGIEP 220


>gi|118382143|ref|XP_001024231.1| hypothetical protein TTHERM_00459230 [Tetrahymena thermophila]
 gi|89305998|gb|EAS03986.1| hypothetical protein TTHERM_00459230 [Tetrahymena thermophila
           SB210]
          Length = 356

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 74/217 (34%), Gaps = 26/217 (11%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-----G 96
              I  +S+GS  LD  L  GG     I E YG   SGKT +A      +Q        G
Sbjct: 105 RSQIRRISTGSKALDDILN-GGIESQSITEFYGEYRSGKTQIAHTACVLAQSQDHCQSPG 163

Query: 97  TCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI----TDMLVRSG 144
              ++D E         ++           L N++  +    +Q   +      ++V   
Sbjct: 164 KVLYIDTEGTFRPERICQIASHYGMEGEYALSNIIYGRAYNVDQQNTLLIKGAQLMVEEN 223

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++V+DS+ A           G      + + + + + +L    +     ++  NQ+ 
Sbjct: 224 CFALLVVDSIMANFR----CDFSGRGDLSERQQALGKFMSRLQRMAAEFNIAVIITNQVM 279

Query: 205 MKIGVMFG----SPETTTGGNALKFYSSVRLDIRRVG 237
                             GG+ L   S+ RL +++  
Sbjct: 280 ADPSGAMTGGAIPQPKPIGGHILAHASTQRLFMKKKT 316


>gi|300708476|ref|XP_002996416.1| hypothetical protein NCER_100491 [Nosema ceranae BRL01]
 gi|239605717|gb|EEQ82745.1| hypothetical protein NCER_100491 [Nosema ceranae BRL01]
          Length = 336

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 90/242 (37%), Gaps = 32/242 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAF 100
            +S+GS   D  LG GG     I E++G   +GKT LA       Q         G  AF
Sbjct: 96  RISTGSTDFDSLLG-GGIQTMSITEMFGEFRTGKTQLATTMCITVQLSEEEGGAKGKAAF 154

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGAVD----I 148
           +D E        R++           L N++ ++    E   E+   L    A D    +
Sbjct: 155 IDTEGTFRPERLREIANRFNIDPDEALDNIIYARAYNSEHQNELVQQLAVKFAEDSKYKL 214

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI- 207
           +VIDS+ +L          G    G + + ++Q L KL +        ++  NQM     
Sbjct: 215 LVIDSIISLFR----VDFSGRGELGERQQKLNQFLSKLINISEEFNIAVLITNQMMADPS 270

Query: 208 --GVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
                   P+   GG+ L   S+ R+ +R      R+  I D       +    + +  +
Sbjct: 271 GAMTFVADPKKPIGGHVLAHASTTRISLRKGRGETRIAKIYDSPDFAEAEATYSITEGGI 330

Query: 260 AS 261
           ++
Sbjct: 331 SN 332


>gi|124485461|ref|YP_001030077.1| DNA repair and recombination protein RadA [Methanocorpusculum
           labreanum Z]
 gi|226736607|sp|A2SR54|RADA_METLZ RecName: Full=DNA repair and recombination protein radA
 gi|124363002|gb|ABN06810.1| DNA repair and recombination protein RadA [Methanocorpusculum
           labreanum Z]
          Length = 329

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/290 (16%), Positives = 107/290 (36%), Gaps = 51/290 (17%)

Query: 13  SKALEAA--LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
            K ++AA  ++ I   +  G         +  + +  + +    +D   G GG     I 
Sbjct: 51  KKIIKAAREMADIGG-FKTGT-----DILARRQDVLKLKTLVPEIDELFG-GGLETQAIT 103

Query: 71  EIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKLGVDLK---- 120
           E+YG   SGK+ +A       Q        GG+C ++D E+        ++   L+    
Sbjct: 104 ELYGEFGSGKSQIAHQLAVNCQLPQELGGLGGSCLYIDTENTFRPERIEQMAEGLELADL 163

Query: 121 --------------NLLISQPDTGEQALEITDM--------LVRSGAVDIIVIDSVAALT 158
                         N+ +++  + +  + + D               V +++IDS+ +L 
Sbjct: 164 PEGYVVPTPDEFLANIHVARAHSSDHQMLLIDAARELSNELTASGLPVKLVIIDSLTSLF 223

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
            R+E  G         + + +++ +  L   +     + +  NQ+    G++FG P    
Sbjct: 224 -RSEYAGR---GTLAGRQQKLNRHMHDLFKLVDDLNAVALVTNQVMANPGLLFGDPTKPI 279

Query: 219 GGNALKFYSSVRLDIRRVGSIK------DKDSITGNQTRVKVVKNKMASP 262
           GGN +   ++ R+ +R+  + K      D  ++   +    V    +   
Sbjct: 280 GGNIVGHTATYRVYLRKSKAGKRIARLVDSPNLPEGEATFMVETAGIKPC 329


>gi|15027139|emb|CAC44784.1| RecA protein [Lactobacillus zeae]
          Length = 107

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 64/107 (59%), Positives = 89/107 (83%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           +D  YA +LGV++ +LL+SQP++GEQ LEI +ML+ S AV+I+VIDSVAAL P+AEIEG 
Sbjct: 1   MDPKYAAELGVNIDDLLLSQPNSGEQGLEIAEMLIESAAVEIVVIDSVAALVPKAEIEGA 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           +G+S  G+QARLMSQALRK+  SI+ +  +++FINQ+R K+GVMFG+
Sbjct: 61  IGDSHVGLQARLMSQALRKMAGSINNTNTLVIFINQLREKVGVMFGN 107


>gi|222154117|gb|ACM47238.1| RAD51 recombination protein [Triticum aestivum]
          Length = 343

 Score = 81.0 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 88/245 (35%), Gaps = 25/245 (10%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            I  V++GS  LD  L  GG   G I E+YG   SGKT L        Q         G 
Sbjct: 102 EIIQVTTGSRELDKIL-EGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGK 160

Query: 98  CAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAV 146
             ++DAE         ++           L+N+  ++    +    +      ++     
Sbjct: 161 ALYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRF 220

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++VIDS  AL  R +  G    S   M    +++ LR L          +V  NQ+  +
Sbjct: 221 ALMVIDSATALY-RTDFSGRGELSARQMH---LAKFLRSLQKLADEFGVAVVISNQVVAQ 276

Query: 207 IG---VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           +    +  G      GGN +   S+ RL +R+  + +    +  +    +       SP 
Sbjct: 277 VDGGAMFAGPQIKPIGGNIMAHASTTRLYLRKGRAEERICKVVSSPCLAEAEARFQISPE 336

Query: 264 KQVEF 268
              + 
Sbjct: 337 GVTDV 341


>gi|309364289|emb|CAP25112.2| CBR-RAD-51 protein [Caenorhabditis briggsae AF16]
          Length = 357

 Score = 81.0 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 95/279 (34%), Gaps = 40/279 (14%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K ++     K ++ A+  +Q  +  GA             +  + +GS  LD  LG GG 
Sbjct: 80  KGISDQKAEKIMKEAMKYVQMGFTTGA-----EVHVKRSQLVQIRTGSAALDRLLG-GGI 133

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKLGVD 118
             G I E+YG   +GKT L        Q         G C ++D            +   
Sbjct: 134 ETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGKCMYIDTNATFRPERIIAIAQR 193

Query: 119 --------LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
                   L+N+ +++    E  + +      ++      ++++D   A   R E  G  
Sbjct: 194 YNMDSAHVLENIAVARAYNSEHLMALIIRAGAMMSESRYAVVIVDCATAHF-RNEYTGR- 251

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG----VMFGSPETTTGGNAL 223
                  +   +S  L+ L          ++  NQ+  ++     +     +   GG+ +
Sbjct: 252 --GDLAERQMKLSAFLKCLAKLADEYGVAVIITNQVVAQVDGGASMFQADAKKPIGGHII 309

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
              S+ RL +R+           G     K+V++     
Sbjct: 310 AHMSTTRLYLRKGK---------GENRVAKMVQSPNLPE 339


>gi|308161798|gb|EFO64232.1| Dmc1b [Giardia lamblia P15]
          Length = 368

 Score = 81.0 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 53/283 (18%), Positives = 98/283 (34%), Gaps = 36/283 (12%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K ++     K L  A     + +  G+           E ++ +S+G    +  LG GG 
Sbjct: 93  KGISEAKVDKILSIATEMCGKTFITGS-----EALKKREQVKRLSTGCADFNALLG-GGV 146

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKLGVD 118
               I E++G   +GKT L       +Q         G   ++D E          +   
Sbjct: 147 ETMSITEVFGEFRTGKTQLCHTLAVTAQLPVSKGGGAGKTVYIDTEGTFRPEKVAPIAER 206

Query: 119 --------LKNLLISQPDTGEQALE---ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
                   L N+++++  T EQ +E       L+      ++++DS+ AL          
Sbjct: 207 FGLNPKKALDNIMVARVYTHEQQIECITALPKLMIENQFSLVIVDSLTALFR----VDFT 262

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG---VMFGSPETTTGGNALK 224
           G      + + + Q L  L          +   NQ+  ++    +    P+   GG+ L 
Sbjct: 263 GRGELADRQQKLGQHLSGLAKLADEFNLAIFVTNQVMAQVDGAAMFTADPKKPIGGHILA 322

Query: 225 FYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
             S+ RL +R      RV  I D  S+   +    +    +  
Sbjct: 323 HASTTRLYLRKGRGDTRVAKIYDSPSLAEGEASYSIAAEGIID 365


>gi|268552839|ref|XP_002634402.1| C. briggsae CBR-RAD-51 protein [Caenorhabditis briggsae]
          Length = 361

 Score = 81.0 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 95/279 (34%), Gaps = 40/279 (14%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K ++     K ++ A+  +Q  +  GA             +  + +GS  LD  LG GG 
Sbjct: 84  KGISDQKAEKIMKEAMKYVQMGFTTGA-----EVHVKRSQLVQIRTGSAALDRLLG-GGI 137

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKLGVD 118
             G I E+YG   +GKT L        Q         G C ++D            +   
Sbjct: 138 ETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGKCMYIDTNATFRPERIIAIAQR 197

Query: 119 --------LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
                   L+N+ +++    E  + +      ++      ++++D   A   R E  G  
Sbjct: 198 YNMDSAHVLENIAVARAYNSEHLMALIIRAGAMMSESRYAVVIVDCATAHF-RNEYTGR- 255

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG----VMFGSPETTTGGNAL 223
                  +   +S  L+ L          ++  NQ+  ++     +     +   GG+ +
Sbjct: 256 --GDLAERQMKLSAFLKCLAKLADEYGVAVIITNQVVAQVDGGASMFQADAKKPIGGHII 313

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
              S+ RL +R+           G     K+V++     
Sbjct: 314 AHMSTTRLYLRKGK---------GENRVAKMVQSPNLPE 343


>gi|197092359|gb|ACH42252.1| RAD51A recombination protein [Triticum aestivum]
 gi|222154121|gb|ACM47240.1| RAD51 recombination protein [Triticum aestivum]
          Length = 342

 Score = 81.0 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 88/245 (35%), Gaps = 25/245 (10%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            I  V++GS  LD  L  GG   G I E+YG   SGKT L        Q         G 
Sbjct: 101 EIIQVTTGSRELDKIL-EGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGK 159

Query: 98  CAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAV 146
             ++DAE         ++           L+N+  ++    +    +      ++     
Sbjct: 160 ALYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRF 219

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++VIDS  AL  R +  G    S   M    +++ LR L          +V  NQ+  +
Sbjct: 220 ALMVIDSATALY-RTDFSGRGELSARQMH---LAKFLRSLQKLADEFGVAVVISNQVVAQ 275

Query: 207 IG---VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           +    +  G      GGN +   S+ RL +R+  + +    +  +    +       SP 
Sbjct: 276 VDGGAMFAGPQIKPIGGNIMAHASTTRLYLRKGRAEERICKVVSSPCLAEAEARFQISPE 335

Query: 264 KQVEF 268
              + 
Sbjct: 336 GVTDV 340


>gi|52549421|gb|AAU83270.1| recombinase [uncultured archaeon GZfos27B6]
          Length = 315

 Score = 81.0 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 91/257 (35%), Gaps = 34/257 (13%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
              + +  +++GS   D  LG GG     + E YG   SGKT +A       Q       
Sbjct: 71  ERRQSVGKLTTGSKSFDELLG-GGLETQAMTEFYGEFGSGKTQIAHQLAVNVQLPPEKGG 129

Query: 94  TGGTCAFVDAEHALDSIYARKLG--------VDLKNLLISQPDTGEQAL-------EITD 138
             G+   VD E+       + +           LKN+ +++       +       EI +
Sbjct: 130 LNGSAIMVDTENTFRPERIKDMAEGAELDYEDVLKNIHVARAYNSNHQILLVEKAKEIAE 189

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            L  +     ++I   A    R+E  G         + + +++ L         +  +++
Sbjct: 190 DLKDTEKPVRLMIIDSATAHFRSEYVGR---GTLADRQQKINRHLHDALRFADLNNAVIM 246

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
             NQ+ ++    FG P    GG+ +   ++ R+ +R+           G +   K+V + 
Sbjct: 247 ITNQVMVRPDAFFGDPTRPIGGHIVGHTATFRIYLRKSK---------GEKRIAKLVDSP 297

Query: 259 MASPFKQVEFDIMYGEG 275
                + V      G G
Sbjct: 298 NLPEAEAVFSVSKAGIG 314


>gi|242069171|ref|XP_002449862.1| hypothetical protein SORBIDRAFT_05g024565 [Sorghum bicolor]
 gi|241935705|gb|EES08850.1| hypothetical protein SORBIDRAFT_05g024565 [Sorghum bicolor]
          Length = 340

 Score = 81.0 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 87/239 (36%), Gaps = 34/239 (14%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            I  V++GS  LD  L  GG   G I EIYG   SGKT L        Q         G 
Sbjct: 96  EIIQVTTGSRELDKIL-EGGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGK 154

Query: 98  CAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAV 146
             ++DAE         ++           L+N+  ++    +    +      ++     
Sbjct: 155 AMYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMIETRF 214

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++V+DS  AL  R +  G    S   M    M++ LR L          +V  NQ+  +
Sbjct: 215 ALMVVDSATALY-RTDFSGRGELSARQMH---MAKFLRSLQKLADEFGVAVVITNQVVAQ 270

Query: 207 IG---VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +    +  G      GGN +   S+ RL +R+           G +   KV+ +   + 
Sbjct: 271 VDGSAMFAGPQIKPIGGNIMAHASTTRLALRKGR---------GEERICKVISSPCLAE 320


>gi|18420327|ref|NP_568402.1| ATRAD51; ATP binding / DNA binding / DNA-dependent ATPase/ damaged
           DNA binding / nucleoside-triphosphatase/ nucleotide
           binding / protein binding / sequence-specific DNA
           binding [Arabidopsis thaliana]
 gi|55976288|sp|P94102|RAD51_ARATH RecName: Full=DNA repair protein RAD51 homolog 1; AltName:
           Full=Rad51-like protein 1; Short=AtRAD51
 gi|1706947|gb|AAB37762.1| RAD51 homolog [Arabidopsis thaliana]
 gi|1706949|gb|AAC49555.1| AtRAD51 [Arabidopsis thaliana]
 gi|2388778|emb|CAA04529.1| Rad51-like protein [Arabidopsis thaliana]
 gi|332005514|gb|AED92897.1| DNA repair protein RAD51-like 1 [Arabidopsis thaliana]
          Length = 342

 Score = 81.0 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 90/249 (36%), Gaps = 35/249 (14%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
            + I  ++SGS  LD  L  GG   G I E+YG   SGKT L        Q         
Sbjct: 99  RQEIIQITSGSRELDKVL-EGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPMDQGGGE 157

Query: 96  GTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSG 144
           G   ++DAE         ++           L+N+  ++    +    +      ++   
Sbjct: 158 GKAMYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMIET 217

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  AL  R +  G    S   M    +++ LR L          +V  NQ+ 
Sbjct: 218 RFALLIVDSATALY-RTDFSGRGELSARQMH---LAKFLRSLQKLADEFGVAVVITNQVV 273

Query: 205 MKIGV---MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
            ++       G      GGN +   ++ RL +R+  +          + R+  V +    
Sbjct: 274 AQVDGSALFAGPQFKPIGGNIMAHATTTRLALRKGRA----------EERICKVISSPCL 323

Query: 262 PFKQVEFDI 270
           P  +  F I
Sbjct: 324 PEAEARFQI 332


>gi|212546047|ref|XP_002153177.1| meiotic recombination protein (Dmc1), putative [Penicillium
           marneffei ATCC 18224]
 gi|111380644|gb|ABH09699.1| DMC1-like protein [Penicillium marneffei]
 gi|210064697|gb|EEA18792.1| meiotic recombination protein (Dmc1), putative [Penicillium
           marneffei ATCC 18224]
          Length = 337

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 89/250 (35%), Gaps = 32/250 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
            + +  +S+GS   D  LG GGF    I E+YG    GKT L+      +Q         
Sbjct: 92  RKKVFKISTGSKQFDTILG-GGFQSSSISEVYGEFRCGKTQLSHTMSVIAQLPKEMGGGE 150

Query: 96  GTCAFVDAEHALDSIYARKLGVDL--------KNLLISQPDTGEQALEITDMLVRSG--- 144
           G  A++D E         ++            +N+  ++    E  LE+ + L +     
Sbjct: 151 GKVAYIDTEGTFRPDRIAQIAERYGLDAESTQENISYARALNSEHQLELLNTLSKEFAGG 210

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++VIDS+             G      + + ++Q L +L+         ++  NQ++
Sbjct: 211 QYRLLVIDSIMNCFR----VDFSGRGELAERQQKLNQFLIRLSHLAEEFNVCVLMTNQVQ 266

Query: 205 MKIGVM----FGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKV 254
              G              GG+ L   S+ R+ +R      RV  I+D       +    +
Sbjct: 267 SDPGASALFAGADGRKPVGGHVLAHASTTRVLLRKGRGDERVAKIQDSPDCPEREATYVI 326

Query: 255 VKNKMASPFK 264
               +  P K
Sbjct: 327 TNGGINDPDK 336


>gi|156849069|ref|XP_001647415.1| hypothetical protein Kpol_1018p90 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156118101|gb|EDO19557.1| hypothetical protein Kpol_1018p90 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 385

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 91/244 (37%), Gaps = 25/244 (10%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS   D  LG GG   G I E++G   +GK+ L        Q         G C +
Sbjct: 143 CLTTGSKNFDTLLG-GGVETGSITELFGEFRTGKSQLCHTLAVTCQLPLDIGGGEGKCLY 201

Query: 101 VDAEHALDSIY----ARKLGVDLK----NLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     +     A++ G+D      N+  ++    +  + +      ++      +I
Sbjct: 202 IDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQIRLLDAAAQMMSESRFSLI 261

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DSV AL  R +  G    S   M      +AL++L      +  +   +         
Sbjct: 262 VVDSVMALY-RTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGNMS 320

Query: 210 MFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMASPF 263
               P+   GGN +   S+ RL  R      R+  + D   +   +    + ++ +  P 
Sbjct: 321 FNPDPKKPIGGNIMAHSSTTRLAFRKGKGCQRLCKVVDSPCLPEAECVFAIYEDGVGDPR 380

Query: 264 KQVE 267
            + E
Sbjct: 381 DEDE 384


>gi|261403509|ref|YP_003247733.1| DNA repair and recombination protein RadA [Methanocaldococcus
           vulcanius M7]
 gi|261370502|gb|ACX73251.1| DNA repair and recombination protein RadA [Methanocaldococcus
           vulcanius M7]
          Length = 320

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 91/250 (36%), Gaps = 36/250 (14%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT---- 97
            + I  +S+GS  LD  LG GG     I E  G   SGKT +A       Q         
Sbjct: 73  RKNIWKLSTGSKNLDEILG-GGLESQSITEFAGMFGSGKTQIAHQACVNLQCPDKIIADD 131

Query: 98  -----------CAFVDAEHALDSIYA----RKLGVD----LKNLLISQPDTGEQAL---E 135
                        ++D E              LG+D    LKN+ +++    +  +   E
Sbjct: 132 SIKEEVLNEPKAVYIDTEGTFRPERIIQMAEALGLDGQDVLKNIFVARAYNSDMQMLYAE 191

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
             + L+R G    +VI      T R E  G         + + + + +  L        C
Sbjct: 192 NVENLIREGHNVKLVIIDSLTSTFRTEYVGR---GKLAERQQKLGRHMAMLNKLADLYNC 248

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249
           +++  NQ+  +   +FG  E   GG+ +   ++ R+ +R      RV  + D   +   +
Sbjct: 249 VVIVTNQVAARPDALFGPSEQAIGGHIVGHAATFRIFLRKAKGDKRVAKLYDSPHLPDAE 308

Query: 250 TRVKVVKNKM 259
              ++ +  +
Sbjct: 309 AMFRITEKGI 318


>gi|147920776|ref|YP_685418.1| DNA repair and recombination protein RadB [uncultured methanogenic
           archaeon RC-I]
 gi|110620814|emb|CAJ36092.1| DNA repair/recombination protein B [uncultured methanogenic
           archaeon RC-I]
          Length = 221

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 93/237 (39%), Gaps = 23/237 (9%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  + +G+  +D  LG GG   G + +IYG  +SGKT + +     + +TG    ++D E
Sbjct: 2   ISRLPTGAKPIDDLLG-GGIETGTVTQIYGEPASGKTNICMQLAINTLRTGKRVIYIDTE 60

Query: 105 HALDSIYARKLGVDL-----KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
                 +++  G D      + ++ +     EQ   I D     G    +VI   A    
Sbjct: 61  GFSVERFSQIAGEDAHELARQVIIFTPLSFEEQFAAIKDAEKLIGQNVGLVILDSATAFY 120

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           R E EG  G        + ++  +  L     +    +V  NQ+   IG         TG
Sbjct: 121 RIEREGKDG----IRPMQELASQVTALLGMARKHGIPVVITNQIYTDIGS---EEFRATG 173

Query: 220 GNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276
           G  L+  S   ++++R G         G +  V   K++        EF I  G+G+
Sbjct: 174 GKWLEHISKAIVELKRNG--------PGKRIAVLR-KHRSLPEGITAEFTIT-GKGV 220


>gi|242824534|ref|XP_002488278.1| meiotic recombination protein (Dmc1), putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218713199|gb|EED12624.1| meiotic recombination protein (Dmc1), putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 337

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 89/250 (35%), Gaps = 32/250 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
            + +  +S+GS   D  LG GGF    I E+YG    GKT L+      +Q         
Sbjct: 92  RKKVFKISTGSKQFDAILG-GGFSSMSISEVYGEFRCGKTQLSHTMSVIAQLPKEMGGGE 150

Query: 96  GTCAFVDAEHALDSIYARKLGVDL--------KNLLISQPDTGEQALEITDMLVRSG--- 144
           G  A++D E         ++            +N+  ++    E  LE+ + L +     
Sbjct: 151 GKVAYMDTEGTFRPERIAQIAERYGLDAESTQENISYARALNSEHQLELLNTLSKEFAGG 210

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++VIDS+             G      + + ++Q L +L+         ++  NQ++
Sbjct: 211 QYRLLVIDSIMNCFR----VDFSGRGELAERQQKLNQFLIRLSHLAEEFNVCVLMTNQVQ 266

Query: 205 MKIGVM----FGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKV 254
              G              GG+ L   S+ R+ +R      RV  I+D       +    +
Sbjct: 267 SDPGASALFAGADGRKPVGGHVLAHASTTRVLLRKGRGDERVAKIQDSPDCPEREATYVI 326

Query: 255 VKNKMASPFK 264
               +  P K
Sbjct: 327 TNGGINDPDK 336


>gi|170584581|ref|XP_001897076.1| DNA repair protein RAD51 homolog 1 [Brugia malayi]
 gi|158595535|gb|EDP34081.1| DNA repair protein RAD51 homolog 1, putative [Brugia malayi]
          Length = 363

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 89/248 (35%), Gaps = 35/248 (14%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTG 95
              I  + +GS  LD  LG GG   G I EI+G   +GK+ L        Q         
Sbjct: 116 RSEIIQIGTGSRELDRLLG-GGVETGSITEIFGEFRTGKSQLCHTLAVMCQLPVDMGGAE 174

Query: 96  GTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSG 144
           G C ++D E          +           L N++ ++    +  +++      ++   
Sbjct: 175 GKCLWIDTEGTFRPERLLAVAERHKLSPQDVLDNVVYARCYNTDHQMQLLVQASAMMAES 234

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++V+DS  +L          G      +  ++++ LR L          +V  NQ+ 
Sbjct: 235 RYALLVVDSATSLFR----TDFSGRGELASRQMMLAKYLRMLLKLSDEFGVAVVITNQVV 290

Query: 205 MKIG----VMFGSPETTTGGNALKFYSSVR---LDIR------RVGSIKDKDSITGNQTR 251
            ++     +  G  +   GGN +   S+ R   L +R      R+  I D   +  ++  
Sbjct: 291 SQVDAGCGMFQGETKKPIGGNIMAHASTTRQLALYLRKGRGEARICKIYDSPCLPESEAM 350

Query: 252 VKVVKNKM 259
             +  + +
Sbjct: 351 FAITTHGI 358


>gi|219850727|ref|YP_002465159.1| DNA repair and recombination protein RadA [Methanosphaerula
           palustris E1-9c]
 gi|219544986|gb|ACL15436.1| DNA repair and recombination protein RadA [Methanosphaerula
           palustris E1-9c]
          Length = 327

 Score = 80.7 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 51/293 (17%), Positives = 103/293 (35%), Gaps = 47/293 (16%)

Query: 6   EMNIVDKSKALEAA--LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           E+      K ++AA  ++ I   +  G            + +  + +     D  LG GG
Sbjct: 46  EIGEASAKKIIKAAREIADIGG-FKTG-----QDVFEQRKNVRKLKTFVPDFDELLG-GG 98

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKLGV 117
                I E+YG   SGK+ +       +Q         G+  ++D E+        ++  
Sbjct: 99  VETQAITEVYGEFGSGKSQIVHQMAVNAQLPESVGGLNGSAIYIDTENTFRPERIEQMVA 158

Query: 118 DLK--------------NLLISQPDTGEQALEI--------TDMLVRSGAVDIIVIDSVA 155
            L               N+ +++  T +  + +         ++      V I +IDS+ 
Sbjct: 159 GLDFPELELPSFEEFLNNIHVARAHTSDHQMLLIDTARELAAELKNSDHPVKIFIIDSLT 218

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
           A   RAE  G         + + +++ + +    I     + +  NQ+     V FG P 
Sbjct: 219 AHF-RAEYAGR---GTLATRQQKLNRHMHEFFKLIDEHNAVGLVTNQVMSNPAVFFGDPT 274

Query: 216 TTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMASP 262
              GGN +   ++ RL +R      R+  + D  ++   +    V +  +   
Sbjct: 275 KPIGGNIVGHTATFRLYLRKSKGGKRIARLVDSPNLPEGEAPFMVEEGGLKPC 327


>gi|71997301|ref|NP_001023466.1| RADiation sensitivity abnormal/yeast RAD-related family member
           (rad-51) [Caenorhabditis elegans]
 gi|2913897|dbj|BAA24982.1| RecA/Rad51/Dmc1-like protein [Caenorhabditis elegans]
 gi|3786402|gb|AAD10194.1| RAD51 short isoform [Caenorhabditis elegans]
 gi|35210311|emb|CAE47473.1| C. elegans protein Y43C5A.6b, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 357

 Score = 80.7 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 95/279 (34%), Gaps = 40/279 (14%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K ++     K ++ A+  +Q  +  GA             +  + +GS  LD  LG GG 
Sbjct: 80  KGISDQKAEKIMKEAMKFVQMGFTTGA-----EVHVKRSQLVQIRTGSASLDRLLG-GGI 133

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKLGVD 118
             G I E+YG   +GKT L        Q         G C ++D            +   
Sbjct: 134 ETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGKCMYIDTNATFRPERIIAIAQR 193

Query: 119 --------LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
                   L+N+ +++    E  + +      ++      ++++D   A   R E  G  
Sbjct: 194 YNMDSAHVLENIAVARAYNSEHLMALIIRAGAMMSESRYAVVIVDCATAHF-RNEYTGR- 251

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG----VMFGSPETTTGGNAL 223
                  +   +S  L+ L          ++  NQ+  ++     +     +   GG+ +
Sbjct: 252 --GDLAERQMKLSAFLKCLAKLADEYGVAVIITNQVVAQVDGGASMFQADAKKPIGGHII 309

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
              S+ RL +R+           G     K+V++     
Sbjct: 310 AHMSTTRLYLRKGK---------GENRVAKMVQSPNLPE 339


>gi|294979775|pdb|3LDA|A Chain A, Yeast Rad51 H352y Filament Interface Mutant
          Length = 400

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 94/244 (38%), Gaps = 25/244 (10%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  LG GG   G I E++G   +GK+ L        Q         G C +
Sbjct: 159 CLTTGSKNLDTLLG-GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLY 217

Query: 101 VDAEHALDSIY----ARKLGVDLK----NLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     +     A++ G+D      N+  ++    +  L +      ++      +I
Sbjct: 218 IDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLI 277

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DSV AL  R +  G    S   M      +AL++L      +  +   +         
Sbjct: 278 VVDSVMALY-RTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMA 336

Query: 210 MFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMASPF 263
               P+   GGN + + S+ RL  +      R+  + D   +   +    + ++ +  P 
Sbjct: 337 FNPDPKKPIGGNIMAYSSTTRLGFKKGKGCQRLCKVVDSPCLPEAECVFAIYEDGVGDPR 396

Query: 264 KQVE 267
           ++ E
Sbjct: 397 EEDE 400


>gi|197092361|gb|ACH42253.1| RAD51A recombination protein [Triticum aestivum]
          Length = 316

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 50/214 (23%), Positives = 80/214 (37%), Gaps = 25/214 (11%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            I  V++GS  LD  L  GG   G I E+YG   SGKT L        Q         G 
Sbjct: 102 EIIQVTTGSRELDKIL-EGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGK 160

Query: 98  CAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAV 146
             ++DAE         ++           L+N+  ++    +    +      ++     
Sbjct: 161 ALYIDAEGTFRPQRLLQIADRFGLYGADVLENVAYARAYNTDHQSRLLLEAASMMVETRF 220

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++VIDS  AL  R +  G    S   M    +++ LR L          +V  NQ+  +
Sbjct: 221 ALMVIDSATALY-RTDFSGRGELSARQMH---LAKFLRSLQKLADEFGVAVVISNQVVAQ 276

Query: 207 IG---VMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           +    +  G      GGN +   S+ RL +R+  
Sbjct: 277 VDGGAMFAGPQIKPIGGNIMAHASTTRLYLRKGK 310


>gi|238878354|gb|EEQ41992.1| meiotic recombination protein DMC1 [Candida albicans WO-1]
          Length = 353

 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 88/250 (35%), Gaps = 32/250 (12%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---- 94
             +   +  +++GS   +  LG GG     I E++G    GKT L       +Q      
Sbjct: 107 AELRTKVFHITTGSKQFNEILG-GGIQSMSITEVFGEFRCGKTQLCHTLCVAAQLPTDMG 165

Query: 95  --GGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDM---LV 141
              G  A++D E        R +           L+N+  ++    E  +E+ +     +
Sbjct: 166 GGEGRVAYIDTEGTFRPDRIRSIAERYGVDADTCLENISYARALNSEHQIELVEQLGNEL 225

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
             G   ++++DS+ A           G      + + ++Q L  LT         +   N
Sbjct: 226 AEGTFRLLIVDSIMACFR----VDYSGRGELNERQQKLNQHLSNLTRVAEDYNIAVFLTN 281

Query: 202 QMRMKIGVMFGSPE----TTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTR 251
           Q++   G              GG+ L   S+ R+ +R      RV  ++D  ++   +  
Sbjct: 282 QVQSDPGASALFAAADGRKPVGGHVLAHASATRILLRKGRGEERVAKLQDSPNMPEKECV 341

Query: 252 VKVVKNKMAS 261
             + +  +  
Sbjct: 342 YVIGEGGIKD 351


>gi|238814375|ref|NP_001154949.1| RecA homolog RAD51 [Nasonia vitripennis]
          Length = 340

 Score = 80.3 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 86/248 (34%), Gaps = 32/248 (12%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGG- 96
           I   I  +++GS  LD  LG GG   G I EI+G   +GK+ L        Q     GG 
Sbjct: 95  IRANIVYITTGSAELDRLLG-GGIETGSITEIFGEFRTGKSQLCHTLAVNCQLPVDMGGA 153

Query: 97  --TCAFVDAEHALDSIYARKLG-----------VDLKNLLISQPDTGEQALEITDMLVRS 143
              C ++D E          +             ++        D   Q L     ++  
Sbjct: 154 EAKCIYIDTEGTFRPERLIAVAERYNINGDSVLDNVATARAYNSDHQTQLLIKASAMMSE 213

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
               ++++DS  AL          G      +   +++ LR L        C +V  NQ+
Sbjct: 214 SRYGLLIVDSATALYR----TDFAGRGELAARQMHLARFLRLLLRLADEFGCAVVITNQV 269

Query: 204 RMKIG----VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVK 253
              +     +  G  +   GGN +   S+ RL +R      R+  I D   +  ++    
Sbjct: 270 VASVDGAASMFGGDQKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPESEATFA 329

Query: 254 VVKNKMAS 261
           +  + +  
Sbjct: 330 INADGIGD 337


>gi|308806876|ref|XP_003080749.1| DNA repair protein RAD51/RHP55 (ISS) [Ostreococcus tauri]
 gi|116059210|emb|CAL54917.1| DNA repair protein RAD51/RHP55 (ISS) [Ostreococcus tauri]
          Length = 420

 Score = 80.3 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 93/252 (36%), Gaps = 35/252 (13%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---- 94
            +  + + ++++G   +D  L  GG   G + EIYG   +GKT L        Q      
Sbjct: 174 EAARKDVIMITTGCAKVDEML-QGGIESGSVTEIYGEFRTGKTQLMHTLAVTCQLPIEQG 232

Query: 95  --GGTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQALEITDM---LV 141
              G C ++D E         ++        G  L N+  ++    E   E+      ++
Sbjct: 233 GGEGKCLYIDTEGTFRPQRLIQIAERFQMDPGPVLDNVAYAKAHNTEHQTELLVAAAGMM 292

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
                 +++IDSV  L  R E EG    S   M    + + LR+L          ++  N
Sbjct: 293 AETRFALMIIDSVTNLY-RTEYEGRGELSARQMH---LGKFLRQLARLADEFGVAVIVSN 348

Query: 202 QMRMKI---GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           Q+            +     GGN +   S+ RL +R+           G    +K+V + 
Sbjct: 349 QVVANPEGGPFAGANALKPIGGNIMAHASTTRLALRKGR---------GENRVMKIVCSP 399

Query: 259 MASPFKQVEFDI 270
           M  P  + +F I
Sbjct: 400 ML-PESEAQFSI 410


>gi|167391058|ref|XP_001739621.1| meiotic recombination protein dmc1 [Entamoeba dispar SAW760]
 gi|165896627|gb|EDR23978.1| meiotic recombination protein dmc1, putative [Entamoeba dispar
           SAW760]
          Length = 347

 Score = 80.3 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 49/272 (18%), Positives = 100/272 (36%), Gaps = 31/272 (11%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           ++  +  + +++   + +   +       +  +++GS   D  LG GG     + E++G 
Sbjct: 78  VDKIMEAVSKIFPTHSFISATTSLERRANVIKITTGSSQFDQLLG-GGIETMSVTEMFGE 136

Query: 76  ESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKLGVD--------LKN 121
             +GKT L       +Q         G  A++D E         ++           L N
Sbjct: 137 FRTGKTQLCHTLAVTTQLPSHLKGGNGKVAYIDTEGTFRPERITQIAERFGVDQTAVLDN 196

Query: 122 LLISQPDTGEQALEITDMLVRSGAVD---IIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +LI++  T EQ  ++   +    A D   I++IDSV +L          G      + + 
Sbjct: 197 ILIARAYTHEQQFDLLIEVAARMAEDHFRILIIDSVTSLFR----VDFSGRGELSERQQK 252

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIG---VMFGSPETTTGGNALKFYSSVRLDIRR 235
           + + + KL          +V  NQ+    G   +    P+   GG+ +   S+ RL +R+
Sbjct: 253 LGKMMNKLIKISEEFNVAVVITNQVMSDPGGGAMFVVDPKKPIGGHVIAHASTTRLYLRK 312

Query: 236 VG------SIKDKDSITGNQTRVKVVKNKMAS 261
                    I D  ++   +    +    +  
Sbjct: 313 GKGEQRIVKIYDSPNLPEAEATFAIDTGGIID 344


>gi|225444585|ref|XP_002273803.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297738498|emb|CBI27743.3| unnamed protein product [Vitis vinifera]
          Length = 337

 Score = 80.3 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 87/239 (36%), Gaps = 34/239 (14%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            I  ++SGS  LD  L  GG   G I EIYG   SGKT L        Q         G 
Sbjct: 96  EIIQITSGSRELDKIL-EGGLETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGK 154

Query: 98  CAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAV 146
             ++DAE         ++           L+N+  ++    +    +      ++     
Sbjct: 155 AMYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRF 214

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++++DS  AL  R +  G    S   M    +++ LR L          +V  NQ+  +
Sbjct: 215 ALMIVDSATALY-RTDFSGRGELSARQMH---LAKFLRSLQKLADEFGVAVVITNQVVAQ 270

Query: 207 IG---VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +    +  G      GGN +   S+ RL +R+           G +   KV+ +   + 
Sbjct: 271 VDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGR---------GEERICKVISSPCLAE 320


>gi|67482461|ref|XP_656580.1| Meiotic recombination protein DMC1 [Entamoeba histolytica
           HM-1:IMSS]
 gi|56473788|gb|EAL51192.1| Meiotic recombination protein DMC1, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 347

 Score = 80.3 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 100/272 (36%), Gaps = 31/272 (11%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           ++  +  + +++   + +   +       +  +++GS   D  LG GG     + E++G 
Sbjct: 78  VDKIMEAVSKIFPTHSFISATTSLERRANVIKITTGSSQFDQLLG-GGIETMSVTEMFGE 136

Query: 76  ESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKLGVD--------LKN 121
             +GKT L       +Q         G  A++D E         ++           L N
Sbjct: 137 FRTGKTQLCHTLAVTTQLPSHLKGGNGKVAYIDTEGTFRPERIAQIAERFGVDQTAVLDN 196

Query: 122 LLISQPDTGEQALEITDMLVRSGAVD---IIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           +LI++  T EQ  ++   +    A D   +++IDSV +L          G      + + 
Sbjct: 197 ILIARAYTHEQQFDLLIEVAARMAEDHFRMLIIDSVTSLFR----VDFSGRGELSERQQK 252

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIG---VMFGSPETTTGGNALKFYSSVRLDIRR 235
           + + + KL          +V  NQ+    G   +    P+   GG+ +   S+ RL +R+
Sbjct: 253 LGKMMNKLIKISEEFNVAVVITNQVMSDPGGGAMFVVDPKKPIGGHVIAHASTTRLYLRK 312

Query: 236 VG------SIKDKDSITGNQTRVKVVKNKMAS 261
                    I D  ++   +    +    +  
Sbjct: 313 GKGEQRIVKIYDSPNLPEAEATFAIDTGGIID 344


>gi|254579509|ref|XP_002495740.1| ZYRO0C01958p [Zygosaccharomyces rouxii]
 gi|238938631|emb|CAR26807.1| ZYRO0C01958p [Zygosaccharomyces rouxii]
          Length = 332

 Score = 80.3 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 54/277 (19%), Positives = 109/277 (39%), Gaps = 39/277 (14%)

Query: 17  EAALSQIQRVYGKGAIMQLG-----SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           E  + +I+   GK  I+++G      Q  I + +  +S+GS  LD  LG GG     I E
Sbjct: 60  EVKVEKIKEAAGK--IIKVGFIPATIQLDIRQKVYSISTGSKQLDSILG-GGIMTMSITE 116

Query: 72  IYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKLGVD------- 118
           ++G    GKT ++      +Q +       G  A++D E        +++          
Sbjct: 117 VFGEFRCGKTQMSHTLCITAQLSKELGGGEGKVAYIDTEGTFRPERIKQIAERYELDPEV 176

Query: 119 -LKNLLISQPDTGEQALEITDM---LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
            L+N+  ++    E  +E+ +     + +G   ++++DS+ A   R +  G    S    
Sbjct: 177 CLENVSYARALNSEHQMELVEQLGGELSTGQYRLVIVDSIMA-NFRVDYSGRGELS---E 232

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM----FGSPETTTGGNALKFYSSVR 230
           + + ++Q L +L          +   NQ++   G              GG+ L   S+ R
Sbjct: 233 RQQRLNQHLFRLNRLSEEFNVAVFMTNQVQSDPGASALFASADGRKPVGGHVLAHASATR 292

Query: 231 LDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
           + +R      RV  ++D   +   +    + +  +  
Sbjct: 293 ILLRKGRGDERVAKLQDSPDMPEKECVYIIGEKGITD 329


>gi|313214368|emb|CBY42765.1| unnamed protein product [Oikopleura dioica]
 gi|313239465|emb|CBY14399.1| unnamed protein product [Oikopleura dioica]
          Length = 340

 Score = 79.9 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 88/250 (35%), Gaps = 31/250 (12%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-- 94
                   +  +++GS   D  L  GG   G I E++G   +GK+ L +     +Q    
Sbjct: 91  DYHKARSEMIRITTGSKEFDRMLA-GGIETGSITELFGEFRTGKSQLCMTLAVTAQLPVD 149

Query: 95  ----GGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDML-- 140
                G   ++D E          +           L N+ +++  + +  + +      
Sbjct: 150 LGGGEGKALYIDTEGTFRPERLLAISERYGLSGKDVLDNVAVARAFSTDHQMTMLHTCAA 209

Query: 141 -VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
            +      I+++DS+ AL  R++  G         +   + + LR L          +V 
Sbjct: 210 MMTESRYSIMIVDSIMALY-RSDYSGR---GELAARQMHLGKFLRGLLKLADTFGVAIVI 265

Query: 200 INQMRMKIGVMFG-SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
            NQ+   +  M     +T  GGN L   S  R+       +K       N+  +  + + 
Sbjct: 266 TNQVTANVDGMMMGDNQTPVGGNILAHASCTRI------KMKKGRGN--NRFGMARIYDS 317

Query: 259 MASPFKQVEF 268
              P +Q+ F
Sbjct: 318 PCLPDEQITF 327


>gi|88603695|ref|YP_503873.1| ATPase [Methanospirillum hungatei JF-1]
 gi|88189157|gb|ABD42154.1| ATPase [Methanospirillum hungatei JF-1]
          Length = 234

 Score = 79.9 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 89/225 (39%), Gaps = 24/225 (10%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VSSG+  LD  +G  G+P+  I +I+G   SGK++L L       K G +  + D E   
Sbjct: 6   VSSGNAALDDLMGT-GYPRKMITQIFGEPGSGKSSLCLMAAVSVLKQGESVVYFDTESFS 64

Query: 108 DSIYARKLGVDLKNL-----LISQPDTGEQALEITDML--VRSGAVDIIVIDSVAALTPR 160
              +++  G +   L     L    D  +QAL I +    +R     II++DS   L  R
Sbjct: 65  AERFSQIAGDEAATLADRLFLYEPVDFNQQALMILESEDVIREQKAGIIILDSATGLY-R 123

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
            E+E            +  ++ +  L     R    ++  NQ+ M I           GG
Sbjct: 124 TELE------HIQEALQKFNRQMTMLLGYAKRYDIPVLISNQVYMDIS---RGDFAPLGG 174

Query: 221 NALKFYSSVRL------DIRRVGSIKDKDSITGNQTRVKVVKNKM 259
             L   S + L      + RR+  +K      G    V +V+  +
Sbjct: 175 TGLYHLSKIILQIERRDNTRRIRVMKHHARPEGTYIDVILVQEGI 219


>gi|145349400|ref|XP_001419122.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579353|gb|ABO97415.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 343

 Score = 79.9 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 88/249 (35%), Gaps = 35/249 (14%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
            +    +++GS  +D  L  GG   G + EIYG   +GKT L       SQ         
Sbjct: 100 RQDTIYITTGSAKVDELL-QGGIESGSVTEIYGEFRTGKTQLMHTLAVTSQMPIEHGGGE 158

Query: 96  GTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDM---LVRSG 144
           G C ++D E         ++           L N+  ++    E   E+      ++   
Sbjct: 159 GKCLYIDTEGTFRPQRLIQIAERFNMDPSAVLDNVAYAKAHNVEHQSELLLAAAGMMAET 218

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              +++IDSV  L  R E EG    S   M    + + LR+L          ++  NQ+ 
Sbjct: 219 RFSLMIIDSVTNLY-RTEYEGRGELSARQMH---LGKFLRQLARLADEFGVAVIVSNQVV 274

Query: 205 MKI---GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
                      +     GGN +   S+ RL +R+             + RV  V      
Sbjct: 275 ANPEGGPFAGANALKPIGGNIMAHASTTRLALRKGR----------GENRVMKVVCSPVL 324

Query: 262 PFKQVEFDI 270
           P  + +F I
Sbjct: 325 PESEAQFSI 333


>gi|74476819|gb|ABA08460.1| RecA [Borrelia spielmanii]
 gi|74476821|gb|ABA08461.1| RecA [Borrelia spielmanii]
          Length = 63

 Score = 79.9 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 44/63 (69%), Positives = 54/63 (85%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D ALGIGG+P+GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA++L
Sbjct: 1   DEALGIGGYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKRL 60

Query: 116 GVD 118
           GV+
Sbjct: 61  GVN 63


>gi|160331524|ref|XP_001712469.1| rad51 [Hemiselmis andersenii]
 gi|159765917|gb|ABW98144.1| rad51 [Hemiselmis andersenii]
          Length = 328

 Score = 79.9 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 89/221 (40%), Gaps = 25/221 (11%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
            + +  +++GS  LD  L  GG   G I E+ G   +GKT L  +    +Q +       
Sbjct: 85  RQEMISLTTGSQELDKIL-RGGIETGSITELIGEYRTGKTQLCHNIAVSAQLSYDQGGGE 143

Query: 96  GTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITD---MLVRSG 144
           G   F+D E          +           L+N+ +++    +Q LEI +    ++   
Sbjct: 144 GRAIFLDTEGTFRPERIVDIAGRFKLNSLDVLENIALTRAYNVDQQLEILNSVGSMMVKY 203

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS+ AL  RAE    +G      + + + + +++L          ++  NQ+ 
Sbjct: 204 KFAVLIVDSIIALY-RAEF---IGRGELSARQQHLGRFIKQLQRLCDEFNIAVLITNQVV 259

Query: 205 MKI---GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
            ++         P+   GGN +   S  RL +++   +   
Sbjct: 260 AQVDGCNSFVQDPKKACGGNIIAHASQTRLFLKKQKGVNRG 300


>gi|313217208|emb|CBY38360.1| unnamed protein product [Oikopleura dioica]
          Length = 338

 Score = 79.9 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 84/243 (34%), Gaps = 32/243 (13%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-- 94
                   +  +++GS   D  L  GG   G I E++G   +GK+ L +     +Q    
Sbjct: 91  DYHKARSEMVRITTGSKEFDRMLA-GGIETGSITELFGEFRTGKSQLCMTLAVTAQLPVD 149

Query: 95  ----GGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDML-- 140
                G   ++D E          +           L N+ +++  + +  + +      
Sbjct: 150 LGGGEGKALYIDTEGTFRPERLLAISERYGLSGKDVLDNVAVARAFSTDHQMTMLHTCAA 209

Query: 141 -VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
            +      I+++DS+ AL  R++  G         +   + + LR L          +V 
Sbjct: 210 MMTESRYSIMIVDSIMALY-RSDYSGRGE---LAARQMHLGKFLRGLLKLADTFGVAIVI 265

Query: 200 INQMRMKIGVMFG-SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
            NQ+   +  M     +T  GGN L   S  R+ +++           GN    ++  + 
Sbjct: 266 TNQVTANVDGMMMGDNQTPVGGNILAHASCTRIKMKKGR---------GNNRFARIYDSP 316

Query: 259 MAS 261
              
Sbjct: 317 CLP 319


>gi|289192763|ref|YP_003458704.1| DNA repair and recombination protein RadA [Methanocaldococcus sp.
           FS406-22]
 gi|288939213|gb|ADC69968.1| DNA repair and recombination protein RadA [Methanocaldococcus sp.
           FS406-22]
          Length = 324

 Score = 79.9 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 89/244 (36%), Gaps = 36/244 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT---------- 97
           +S+GS  LD  LG GG     + E  G   SGKT +A       Q               
Sbjct: 83  LSTGSKNLDEILG-GGLESQSVTEFAGMFGSGKTQIAHQACVNLQCPDRIIADDSIKDEI 141

Query: 98  -----CAFVDAEHALDSIYA----RKLGVD----LKNLLISQPDTGEQAL---EITDMLV 141
                  ++D E              LG+D    L N+ +++    +  +   E  + L+
Sbjct: 142 LNEPKAVYIDTEGTFRPERIIQMAEALGLDGKEVLNNIFVARAYNSDMQMLYAENVENLI 201

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           R G    ++I      T R E    +G      + + + + +  L        C+++  N
Sbjct: 202 REGHNIKLIIVDSLTSTFRTEY---IGRGKLAERQQKLGRHMATLNKLADLYNCVVIVTN 258

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
           Q+  +   +FG  E   GG+ +   ++ R+ +R      RV  + D   +   +   ++ 
Sbjct: 259 QVAARPDALFGPSEQAIGGHIVGHAATFRIFLRKAKGDKRVAKLYDSPHLPDAEAMFRIT 318

Query: 256 KNKM 259
           +  +
Sbjct: 319 EKGI 322


>gi|112419535|dbj|BAF02935.1| RAD51 homolog [Populus nigra]
          Length = 342

 Score = 79.9 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 88/241 (36%), Gaps = 34/241 (14%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
            + I  ++SGS  LD  L  GG   G I E+YG   SGKT L        Q         
Sbjct: 99  RQEIIQITSGSRELDKIL-EGGVETGSITEMYGEFRSGKTQLCHTLCVTCQLPLDQGGGE 157

Query: 96  GTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSG 144
           G   ++DAE         ++           L+N+  ++    +    +      ++   
Sbjct: 158 GKAMYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVET 217

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  AL  R +  G    S   M    +++ LR L          +V  NQ+ 
Sbjct: 218 RFALMIVDSATALY-RTDFSGRGELSARQMH---LAKFLRSLQKLADEFGVAVVITNQVV 273

Query: 205 MKIG---VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
            ++    +  G      GGN +   S+ RL +R+           G +   KV+ +   +
Sbjct: 274 AQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGR---------GEERICKVISSPCLA 324

Query: 262 P 262
            
Sbjct: 325 E 325


>gi|321250076|ref|XP_003191680.1| recombinase [Cryptococcus gattii WM276]
 gi|317458147|gb|ADV19893.1| Recombinase, putative [Cryptococcus gattii WM276]
          Length = 353

 Score = 79.9 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 90/248 (36%), Gaps = 30/248 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIY-----GPESSGKTTLALHTIAQSQKT------GG 96
           +++GS GLD  LG GG   G I E+Y     G   +GK+ L        Q         G
Sbjct: 108 ITTGSTGLDTILG-GGIETGAITELYADMDTGEFRTGKSQLCHTLAVTCQLPVSMGGGEG 166

Query: 97  TCAFVDAEHALDSIYA----RKLGVD----LKNLLISQPDTGEQALEI---TDMLVRSGA 145
            C ++D E     +       + G+D    L N+  ++    +  L++      ++    
Sbjct: 167 KCLYIDTEGTFRPVRMLAVAERYGLDGEEVLDNIAYARAYNADHQLQLLVQASAMMAESR 226

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
             ++++DS  +L  R +  G    S   M      + L +L      +  +   +     
Sbjct: 227 FSLLIVDSCTSLY-RTDFSGRGELSARQMHLAKFLRTLMRLADEFGVAVVVTNQVVAQVD 285

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
                    +   GGN +   S+ RL++R      RV  I D   +   +    +  N +
Sbjct: 286 GGQFAVADAKKPIGGNIMAHASTTRLNLRKGRGTSRVCKIVDSPCLPEAEAIFAINPNGI 345

Query: 260 ASPFKQVE 267
             P +  E
Sbjct: 346 GDPEELQE 353


>gi|256811072|ref|YP_003128441.1| DNA repair and recombination protein RadA [Methanocaldococcus
           fervens AG86]
 gi|256794272|gb|ACV24941.1| DNA repair and recombination protein RadA [Methanocaldococcus
           fervens AG86]
          Length = 320

 Score = 79.9 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 91/250 (36%), Gaps = 36/250 (14%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ--------- 92
            + I  +S+GS  LD  LG GG     + E  G   SGKT +A       Q         
Sbjct: 73  RKNIWKLSTGSKNLDEILG-GGLESQSVTEFAGMFGSGKTQIAHQACVNLQCPERIIADD 131

Query: 93  ------KTGGTCAFVDAEHALDSIYA----RKLGVD----LKNLLISQPDTGEQAL---E 135
                        ++D E              LG+D    L N+ +++    +  +   E
Sbjct: 132 AIKEEILNEPKAVYIDTEGTFRPERIVQMAEALGLDGQEVLNNIFVARAYNSDMQMLYAE 191

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
             + L+R G    +VI      T R E  G         + + + + +  L        C
Sbjct: 192 NVENLIREGHNIKLVIVDSLTSTFRTEYVGR---GKLAERQQKLGRHMATLNKLADLYNC 248

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249
           +++  NQ+  +   +FG+ E   GG+ +   ++ R+ +R      RV  + D   +   +
Sbjct: 249 VVIVTNQVAARPDAIFGASEQAIGGHIVGHAATFRIFLRKAKGDKRVAKLYDSPHLPDAE 308

Query: 250 TRVKVVKNKM 259
              ++ +  +
Sbjct: 309 AMFRITEKGI 318


>gi|241950183|ref|XP_002417814.1| DNA double-strand-break repair and homologue-pairing meiosis
           protein (DMC1/RAD51 homologue), putative [Candida
           dubliniensis CD36]
 gi|223641152|emb|CAX45529.1| DNA double-strand-break repair and homologue-pairing meiosis
           protein (DMC1/RAD51 homologue), putative [Candida
           dubliniensis CD36]
          Length = 324

 Score = 79.9 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 88/250 (35%), Gaps = 32/250 (12%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---- 94
             +   +  +++GS   D  LG GG     I E++G    GKT L       +Q      
Sbjct: 78  AELRTKVFHITTGSRQFDEILG-GGIQSMSITEVFGEFRCGKTQLCHTLCIAAQLPTDMG 136

Query: 95  --GGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDM---LV 141
              G  A++D E        R +           L+N+  ++    E  +E+ +     +
Sbjct: 137 GGEGRVAYIDTEGTFRPDRIRSIAERYDVDADTCLENISYARALNSEHQIELVEQLGNEL 196

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
             G   ++++DS+ A           G      + + ++Q L  LT         +   N
Sbjct: 197 AEGTFRLLIVDSIMACFR----VDFSGRGELNERQQKLNQHLSNLTRVAEDYNIAVFLTN 252

Query: 202 QMRMKIGVMFGSPE----TTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTR 251
           Q++   G              GG+ L   S+ R+ +R      RV  ++D  ++   +  
Sbjct: 253 QVQSDPGASALFAAADGRKPVGGHVLAHASATRILLRKGRGEERVAKLQDSPNMPEKECV 312

Query: 252 VKVVKNKMAS 261
             + +  +  
Sbjct: 313 YVIGEGGIKD 322


>gi|147920562|ref|YP_685641.1| DNA repair and recombination protein RadA [uncultured methanogenic
           archaeon RC-I]
 gi|110621037|emb|CAJ36315.1| DNA repair/recombination protein A [uncultured methanogenic
           archaeon RC-I]
          Length = 323

 Score = 79.9 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 80/226 (35%), Gaps = 29/226 (12%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
              + +  + +    LD  LG GG     I E YG   SGKT +A       Q       
Sbjct: 75  ERRKAVGKLKTNCNSLDDLLG-GGVETQSITEFYGEFGSGKTQVAHQLAVNVQLPPEQGG 133

Query: 94  TGGTCAFVDAEHALDSIYARKL------GVDLKN------LLISQPDTGEQAL------- 134
            GG+   +D E+        ++      G DL        + +++       +       
Sbjct: 134 LGGSVVMIDTENTFRPERIAQMVKGLKGGEDLDPEDFLKNIHVARAYNSNHQILLVESAS 193

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           E+ + +  S     ++I        R+E  G         + + +++ +  L      + 
Sbjct: 194 ELAEKMRDSDRPVKLIIVDSLTAHFRSEYVGR---GTLADRQQKLNKHMHDLMRFGDINN 250

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
             +V  NQ++ K    FG P    GG+ +   ++ RL +R+    K
Sbjct: 251 AAIVVTNQVQAKPDAFFGDPTRPIGGHIVGHTATFRLYLRKSKGEK 296


>gi|159905833|ref|YP_001549495.1| DNA repair and recombination protein RadA [Methanococcus
           maripaludis C6]
 gi|226736608|sp|A9AA90|RADA_METM6 RecName: Full=DNA repair and recombination protein radA
 gi|159887326|gb|ABX02263.1| DNA repair and recombination protein RadA [Methanococcus
           maripaludis C6]
          Length = 322

 Score = 79.5 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 92/252 (36%), Gaps = 39/252 (15%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT---- 97
            + +  +S+GS  LD  L  GG     + E  G   SGKT +   +    Q  G      
Sbjct: 74  RQSVWRLSTGSKELDTVLA-GGLESQSVTEFAGMYGSGKTQIMHQSCVNLQIAGKIYADL 132

Query: 98  ------------CAFVDAEHALDSIYA----RKLGVD----LKNLLISQPDTGEQAL--- 134
                         ++D E              LG+D    L N  +++    +  +   
Sbjct: 133 EGVVEEELENPKAVYIDTEGTFRPERVVQMAEGLGIDGQLVLDNTFVARAYNSDMQMLFA 192

Query: 135 -EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
            +I D++     + +++IDS+ +   R E  G         + + + + +  L       
Sbjct: 193 EKIEDLIKSGNNIKLVIIDSLTSTF-RNEFTGR---GKLAERQQKLGRHMATLNKLADLY 248

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITG 247
            CI++  NQ+  K    FG  E   GG+ +   ++ R  +R      RV  + D   +  
Sbjct: 249 NCIVLVTNQVAAKPDAFFGVAEQAIGGHVVGHAATFRFFLRKSKGDKRVAKLYDSPHLPD 308

Query: 248 NQTRVKVVKNKM 259
           ++   ++ +  +
Sbjct: 309 SEAVFRITEKGI 320


>gi|294944311|ref|XP_002784192.1| meiotic recombination protein DMC1, putative [Perkinsus marinus
           ATCC 50983]
 gi|239897226|gb|EER15988.1| meiotic recombination protein DMC1, putative [Perkinsus marinus
           ATCC 50983]
          Length = 335

 Score = 79.5 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 89/245 (36%), Gaps = 35/245 (14%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK------TGGTCAF 100
            +S+GS  +D  LG GG     I E YG    GKT L       +Q         G   +
Sbjct: 97  RLSTGSSKVDQLLG-GGIESCSITEFYGEFRCGKTQLCHSLSVIAQMPQSYGGANGKVCY 155

Query: 101 VDAEHALDSIYA----RKLGVD----LKNLLISQPDTGEQALEIT---DMLVRSGAVDII 149
           +D E+           +  GVD    L N++ ++    E  +++       +      ++
Sbjct: 156 IDTENTFRPDRITQIAQAFGVDPQQVLDNIIYARCYNSEHLVQLLLCVAAKMAEEKYALL 215

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DS+             G      + +L+S+ + +L          +V  NQ+      
Sbjct: 216 VVDSIMGPFR----VDFTGRGDLAERQQLLSRVMSRLQKLSEEYNLAVVITNQVMADPAA 271

Query: 210 MFG---SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
                 +P    GG+ L  YS+ R+ +R+           G Q  +K++ +    P    
Sbjct: 272 AMSFAANPPKPIGGHVLAHYSTTRIALRKGR---------GEQRIMKIIDSPNL-PEGDC 321

Query: 267 EFDIM 271
            F+I 
Sbjct: 322 VFEIC 326


>gi|150402395|ref|YP_001329689.1| DNA repair and recombination protein RadA [Methanococcus
           maripaludis C7]
 gi|166218762|sp|A6VGG2|RADA_METM7 RecName: Full=DNA repair and recombination protein radA
 gi|150033425|gb|ABR65538.1| DNA repair and recombination protein RadA [Methanococcus
           maripaludis C7]
          Length = 322

 Score = 79.5 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 92/252 (36%), Gaps = 39/252 (15%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT---- 97
            + +  +S+GS  LD  L  GG     + E  G   SGKT +   +    Q  G      
Sbjct: 74  RQSVWRLSTGSKELDTVLA-GGLESQSVTEFAGMYGSGKTQIMHQSCVNLQIAGKIYADL 132

Query: 98  ------------CAFVDAEHALDSIYA----RKLGVD----LKNLLISQPDTGEQAL--- 134
                         ++D E              LG+D    L N  +++    +  +   
Sbjct: 133 EGVVEEELEHPKAVYIDTEGTFRPERVVQMAEGLGIDGQLVLDNTFVARAYNSDMQMLFA 192

Query: 135 -EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
            +I D++     + +++IDS+ +   R E  G         + + + + +  L       
Sbjct: 193 EKIEDLIKGGNNIKLVIIDSLTSTF-RNEFTGR---GKLAERQQKLGRHMATLNKLADLY 248

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITG 247
            CI++  NQ+  K    FG  E   GG+ +   ++ R  +R      RV  + D   +  
Sbjct: 249 NCIVLVTNQVAAKPDAFFGVAEQAIGGHVVGHAATFRFFLRKSKGDKRVAKLYDSPHLPD 308

Query: 248 NQTRVKVVKNKM 259
           ++   ++ +  +
Sbjct: 309 SEAVFRITEKGI 320


>gi|1706446|sp|P50265|DLH1_CANAL RecName: Full=Meiotic recombination protein DLH1; AltName:
           Full=DMC1 homolog
 gi|1145716|gb|AAC49400.1| Dlh1p [Candida albicans]
          Length = 324

 Score = 79.5 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 87/250 (34%), Gaps = 32/250 (12%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---- 94
                 +  +++GS   D  LG GG     I E++G    GKT L       +Q      
Sbjct: 78  AESRTKVFHITTGSKQFDEILG-GGIQSMSITEVFGEFRCGKTQLCHTLCVAAQLPTDMG 136

Query: 95  --GGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDM---LV 141
              G  A++D E        R +           L+N+  ++    E  +E+ +     +
Sbjct: 137 GGEGRVAYIDTEGTFRPDRIRSIAERYGVDADICLENISYARALNSEHQIELVEQLGNEL 196

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
             G   ++++DS+ A           G      + + ++Q L  LT         +   N
Sbjct: 197 AEGTFRLLIVDSIMACFR----VDYSGRGELNERQQKLNQHLSNLTRVAEDYNIAVFLTN 252

Query: 202 QMRMKIGVMFGSPE----TTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTR 251
           Q++   G              GG+ L   S+ R+ +R      RV  ++D  ++   +  
Sbjct: 253 QVQSDPGASALFAAADGRKPVGGHVLAHASATRILLRKGRGEERVAKLQDSPNMPEKECV 312

Query: 252 VKVVKNKMAS 261
             + +  +  
Sbjct: 313 YVIGEGGIKD 322


>gi|300122361|emb|CBK22933.2| unnamed protein product [Blastocystis hominis]
 gi|300122364|emb|CBK22936.2| unnamed protein product [Blastocystis hominis]
 gi|300122845|emb|CBK23852.2| unnamed protein product [Blastocystis hominis]
          Length = 333

 Score = 79.5 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 84/243 (34%), Gaps = 29/243 (11%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---- 94
             + E I  +S+G   LD  LG GG   G + E+YG   +GKT L        Q      
Sbjct: 88  SKVREDIIHISTGCKELDAILG-GGMETGSLTELYGEFRTGKTQLCHTLCVICQLPVEQG 146

Query: 95  --GGTCAFVDAEHALDSIY----ARKLGVDLKNLLISQPD-------TGEQALEITDMLV 141
              G   ++D E           +++ G+D  +++ +             Q L     L+
Sbjct: 147 GGEGKALYIDTEGTFRPERLAQISQRFGLDPNDVMDNVAYARAYNSEHQMQLLMQAGALM 206

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
                 ++++DS  AL  R +  G    S          + L+KL      +  +   + 
Sbjct: 207 SESRFALVIVDSATALF-RTDYTGRGELSTRQQNLAQFLRGLQKLADEFGVAVVVTNQVV 265

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
                 GV    P    GGN +   S+ RL +++           G     KVV +    
Sbjct: 266 ANP-DTGVFAKDPLKPIGGNIMAHASTTRLRLKKGR---------GTTRICKVVDSPCLP 315

Query: 262 PFK 264
             +
Sbjct: 316 EGE 318


>gi|74476817|gb|ABA08459.1| RecA [Borrelia spielmanii]
          Length = 62

 Score = 79.5 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 43/61 (70%), Positives = 52/61 (85%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D ALGIGG+P+GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA++L
Sbjct: 1   DEALGIGGYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKRL 60

Query: 116 G 116
           G
Sbjct: 61  G 61


>gi|47933423|gb|AAT39336.1| DNA repair protein RAD51 [Oikopleura dioica]
 gi|313216997|emb|CBY38192.1| unnamed protein product [Oikopleura dioica]
 gi|313229155|emb|CBY23740.1| unnamed protein product [Oikopleura dioica]
          Length = 340

 Score = 79.5 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 87/250 (34%), Gaps = 31/250 (12%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-- 94
                   +  +++GS   D  L  GG   G I E++G   +GK+ L +     +Q    
Sbjct: 91  DYHKARSEMVRITTGSKEFDRMLA-GGVETGSITELFGEFRTGKSQLCMTLAVTAQLPVD 149

Query: 95  ----GGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDML-- 140
                G   ++D E          +           L N+ +++  + +  + +      
Sbjct: 150 LGGGEGKALYIDTEGTFRPERLLAISERYGLSGKDVLDNVAVARAFSTDHQMTMLHTCAA 209

Query: 141 -VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
            +      I+++DS+ AL  R++  G         +   + + LR L          +V 
Sbjct: 210 MMTESRYSIMIVDSIMALY-RSDYSGRGE---LAARQMHLGKFLRGLLKLADTFGVAIVI 265

Query: 200 INQMRMKIGVMFG-SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
            NQ+   +  M     +T  GGN L   S  R+       +K       N+     + + 
Sbjct: 266 TNQVTANVDGMMMGDNQTPVGGNILAHASCTRI------KMKKGRGN--NRFGTARIYDS 317

Query: 259 MASPFKQVEF 268
              P +Q+ F
Sbjct: 318 PCLPDEQITF 327


>gi|226328745|ref|ZP_03804263.1| hypothetical protein PROPEN_02645 [Proteus penneri ATCC 35198]
 gi|225201931|gb|EEG84285.1| hypothetical protein PROPEN_02645 [Proteus penneri ATCC 35198]
          Length = 86

 Score = 79.1 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 56/84 (66%), Positives = 72/84 (85%)

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
           +MSQA+RKL  ++  S  +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G
Sbjct: 1   MMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIG 60

Query: 238 SIKDKDSITGNQTRVKVVKNKMAS 261
           S+K+ D + G++TRVKVVK +  S
Sbjct: 61  SVKNGDEVVGSETRVKVVKKQNCS 84


>gi|2500107|sp|Q40134|RAD51_SOLLC RecName: Full=DNA repair protein RAD51 homolog
 gi|1143810|gb|AAC23700.1| LeRAD51 [Solanum lycopersicum]
          Length = 342

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/215 (22%), Positives = 80/215 (37%), Gaps = 25/215 (11%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            I  ++SGS  LD  L  GG   G I EIYG    GKT L        Q         G 
Sbjct: 101 EIIQITSGSKELDKIL-EGGIETGSITEIYGEFRCGKTQLCHTLCVTCQLPLDQGGGEGK 159

Query: 98  CAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAV 146
             ++DAE         ++           L+N+  ++    +    +      ++     
Sbjct: 160 AMYIDAEGTFRPQRLLQIADRYGLNGPDVLENVAYARAYNTDHQSRLLLEAASMMVETRF 219

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++++DS  AL  R +  G    S   M    +++ LR L          +V  NQ+  +
Sbjct: 220 ALMIVDSATALY-RTDFSGRGELSARQMH---LAKFLRSLQKLADEFGVAVVITNQVVAQ 275

Query: 207 IG---VMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           +    V  G      GGN +   S+ RL +R+  +
Sbjct: 276 VDGSAVFAGPQIKPIGGNIMAHASTTRLALRKGRA 310


>gi|301608452|ref|XP_002933806.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog
           [Xenopus (Silurana) tropicalis]
          Length = 314

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 88/239 (36%), Gaps = 42/239 (17%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +S+GS   D  LG GG     I E +G   +GKT LA      +Q       TGG   F+
Sbjct: 90  ISTGSQEFDKLLG-GGIESMAITETFGEFRTGKTQLAHTLCVTAQLPGPNGYTGGKIIFI 148

Query: 102 DAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-----VDI 148
           D E+         +           L N+L ++  T E  +E+ D +            +
Sbjct: 149 DTENTFRPDRLHDIADRFSVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEPGIFKL 208

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           ++IDS+ AL          G      + + ++Q L +L             I++ + K  
Sbjct: 209 LIIDSIMALFR----VDFSGRGELAERQQKLAQMLSRLQK-----------ISEGKFKTK 253

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
                P+   GG+ L   S+ R+ +R      R+  I D   +  N+    +    +  
Sbjct: 254 FQ-ADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITSGGIND 311


>gi|20092352|ref|NP_618427.1| DNA repair and recombination protein RadA [Methanosarcina
           acetivorans C2A]
 gi|34395790|sp|Q8TK71|RADA_METAC RecName: Full=DNA repair and recombination protein radA
 gi|19917601|gb|AAM06907.1| DNA repair protein [Methanosarcina acetivorans C2A]
          Length = 325

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 82/221 (37%), Gaps = 33/221 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK------TGGTCAFV 101
           +++G +  D  +G GG     I E+YG   SGKT +A       Q         G+   +
Sbjct: 82  LTTGCVEFDEMMG-GGIETQSITELYGEFGSGKTQVAHQLAVNVQMDKEHGGLDGSVIII 140

Query: 102 DAEHALDSIYARKLGVDL--------------KNLLISQPDTGEQALEITD--------M 139
           D E+        ++   L              +N+ +++       + + D        +
Sbjct: 141 DTENTFRPERITQMVKGLSEKYGMELDPEEFLQNIHVARAYNSNHQILLVDSATDLANEL 200

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
                 V ++++DS+ A   RAE  G         + + +++ +  L          +V 
Sbjct: 201 KEMGKPVRLLIVDSLMAHF-RAEYVGR---GTLADRQQKLNKHMHGLLRFGDLFNACVVV 256

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
            NQ+  K    FG P    GG+ +   ++ RL +R+    K
Sbjct: 257 TNQVMAKPDAFFGDPTRPVGGHIVGHTATFRLYLRKSKGEK 297


>gi|154151638|ref|YP_001405256.1| DNA repair and recombination protein RadA [Candidatus Methanoregula
           boonei 6A8]
 gi|154000190|gb|ABS56613.1| DNA repair and recombination protein RadA [Methanoregula boonei
           6A8]
          Length = 325

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/294 (18%), Positives = 105/294 (35%), Gaps = 41/294 (13%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +    E++     K ++AA          G+           + I  +S     LD  +G
Sbjct: 41  LSEITEISESTAKKIIKAARESADI----GSFRTGKDIFEQRKEIRKLSFRVPELDALMG 96

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARK 114
            GG     I E+YG   SGK+ +        Q         G+  ++D E+        +
Sbjct: 97  -GGLETQAITEMYGEFGSGKSQVVHQMAVNVQLPEEQGGMNGSVIYIDTENTFRPERIEQ 155

Query: 115 ----LGVD--------LKNLLISQPDTGEQALEITDMLVR--------SGAVDIIVIDSV 154
               LG+D        L N+ I++  T +  + + +               V + +IDS+
Sbjct: 156 MVAGLGIDDIPDTQEFLDNIHIARAHTSDHQMLLVENSRDLANELKGSEKPVKLFIIDSL 215

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
            A   R+E  G         + + +++ + +L   I     + +  NQ+     V FG P
Sbjct: 216 TAHF-RSEYAGR---GTLAARQQKLNRHMHELFKLIDEHNAVGLVTNQVMSNPAVFFGDP 271

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIK------DKDSITGNQTRVKVVKNKMASP 262
               GGN +   ++ R+ +R+  + K      D  ++   +    V +  +   
Sbjct: 272 TKPIGGNIVGHTATFRIYLRKSKAGKRIARLVDSPNLPEGEAPFMVEEAGLKPC 325


>gi|156084788|ref|XP_001609877.1| Rad51 protein [Babesia bovis T2Bo]
 gi|154797129|gb|EDO06309.1| Rad51 protein, putative [Babesia bovis]
          Length = 346

 Score = 78.7 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 82/240 (34%), Gaps = 35/240 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
            ++GS  LD  L  GG   G I EI G  S+GKT L       SQ         G C ++
Sbjct: 105 FTTGSTALDALL-QGGIESGSITEIIGDFSTGKTQLCHTLAITSQLPIEQNGGEGKCLWI 163

Query: 102 DAEHALDSIYARKLGVD--------LKNLLISQPDTGEQ---ALEITDMLVRSGAVDIIV 150
           D +++        +           + N++  +    EQ    L      +      +++
Sbjct: 164 DTQNSFRPERLGPIANRFGLSHAECVANIVYVKVSNTEQQFDMLVEAAHYMAQSRFAMLI 223

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV- 209
           +DS  AL          G      +   + +  R L          +V  NQ+  ++   
Sbjct: 224 VDSATALYR----TDYTGRGELAARQMSLGKYFRALKRLADIYGVAVVVTNQVMARVDNM 279

Query: 210 ---MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
              M G+ +   GG+ +   +  RL +R+           GN    KV  +      + V
Sbjct: 280 SSFMGGNDKVPVGGHVVAQNTQTRLFLRKAR---------GNSRVCKVYNSPSLPEGEAV 330


>gi|296108873|ref|YP_003615822.1| DNA repair and recombination protein RadA [Methanocaldococcus
           infernus ME]
 gi|295433687|gb|ADG12858.1| DNA repair and recombination protein RadA [Methanocaldococcus
           infernus ME]
          Length = 320

 Score = 78.7 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 83/219 (37%), Gaps = 30/219 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ--------------- 92
           +S+GS  LD  LG GG     ++E  GP  SGKT +A       Q               
Sbjct: 79  LSTGSKNLDSILG-GGLESQSVIEFAGPYGSGKTQIAHQACVNLQCPERIIADEKLKEEI 137

Query: 93  KTGGTCAFVDAEHALDSIYA----RKLGVD----LKNLLISQPDTGEQAL---EITDMLV 141
                  ++D E              +G+D    LKN+ +++    +  +   E  + L+
Sbjct: 138 LDNPKAVYIDTEGTFRPERIIEMAEAIGLDGKEVLKNIKVARAYNSDMQMLYAEKVEELI 197

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           + G    +VI      T R E  G         + + + + +  L        C+++  N
Sbjct: 198 QKGENIRLVIVDSLTSTFRTEYTGR---GKLAERQQKLGRHMATLNKLADLYNCVVLVTN 254

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           Q+  +   +FG  E   GG+ +   ++ R+ +++    K
Sbjct: 255 QVAARPDAIFGPAEQAIGGHIVGHAATFRVFLKKTKGDK 293


>gi|294495001|ref|YP_003541494.1| DNA repair and recombination protein RadB [Methanohalophilus mahii
           DSM 5219]
 gi|292666000|gb|ADE35849.1| DNA repair and recombination protein RadB [Methanohalophilus mahii
           DSM 5219]
          Length = 225

 Score = 78.7 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 82/235 (34%), Gaps = 21/235 (8%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           +    ++++SG   +D  LG GGF  G + +IYG   SGKT L L               
Sbjct: 1   MCNITDLLTSGCKPIDELLG-GGFEPGVVTQIYGESGSGKTNLCLQLAVYCVNNNKKAIL 59

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR-----SGAVDIIVIDSVA 155
           VD E      + +  G + + +  +       + E     +      S     ++I   A
Sbjct: 60  VDTEAISPERFRQIAGENAREIAQNIIIYEPHSFEEQYSAIHEIEKISAQNIGLIIVDSA 119

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
               R    G   E       R ++  +  L     +   ++V  NQ+   IG       
Sbjct: 120 TAYYR---FGLEDEEKSIRTRRELANQIGYLHGLARKRGIVVVITNQVYSDIGT---GKL 173

Query: 216 TTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
              GG+ ++  S   + + R G          N+ +  ++K++        EF I
Sbjct: 174 KPVGGSTVEHMSKTIIQLERTG---------ENKRKANLLKHRSRPEGLSREFTI 219


>gi|237833229|ref|XP_002365912.1| DNA repair protein, putative [Toxoplasma gondii ME49]
 gi|211963576|gb|EEA98771.1| DNA repair protein, putative [Toxoplasma gondii ME49]
 gi|221488373|gb|EEE26587.1| DNA repair protein, putative [Toxoplasma gondii GT1]
 gi|221508875|gb|EEE34444.1| DNA repair protein, putative [Toxoplasma gondii VEG]
          Length = 354

 Score = 78.7 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 88/246 (35%), Gaps = 26/246 (10%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----- 94
              E +   ++GS+ LD  L  GG   G + E++G   +GKT L        Q       
Sbjct: 107 EARENLIRFTTGSVQLDSLL-KGGIETGNLTELFGEFRTGKTQLCHTLAVTCQLPIEQAG 165

Query: 95  -GGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVR 142
             G C ++D E          +           L N+  ++    +  +E+      ++ 
Sbjct: 166 GEGKCLWIDTEGTFRPERIVSIAKRFGLNANDCLDNVAYARAYNCDHQMELLMEASAMMA 225

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                ++++DS  AL  R+E  G    +          + L+++  +   +  +   +  
Sbjct: 226 ESRFALLIVDSATALY-RSEYTGRGELASRQTHLCRFLRCLQRIADTYGVAVVVSNQVVA 284

Query: 203 MRMKIGVMFGSPET-TTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
               +G MF   E    GGN +   S  RL +R      R+  I D  S+   +    + 
Sbjct: 285 KVDNMGGMFSGNEKLPIGGNIMAHASQTRLYLRKGRGESRICKIYDSPSLAEGEAVFAIG 344

Query: 256 KNKMAS 261
           +  +  
Sbjct: 345 EGGIGD 350


>gi|11499679|ref|NP_070921.1| DNA repair and recombination protein RadB [Archaeoglobus fulgidus
           DSM 4304]
 gi|6225909|sp|O28184|RADB_ARCFU RecName: Full=DNA repair and recombination protein radB
 gi|2648436|gb|AAB89159.1| DNA repair protein REC [Archaeoglobus fulgidus DSM 4304]
          Length = 221

 Score = 78.7 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 91/225 (40%), Gaps = 20/225 (8%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS  +D  LG GG   G + +IYG   +GKTTL L     + +     A++D E   
Sbjct: 6   IPTGSKCIDSLLG-GGVETGTVTQIYGHGGTGKTTLCLMLAKNAAEQ-FKVAYIDTEGLS 63

Query: 108 DSIYARKLGVD--LKNLLISQPDTGEQA---LEITDMLVRSGAVDIIVIDSVAALTPRAE 162
                +  G +    N+ + +     Q    ++  + L RS  V ++++D   +L  R+E
Sbjct: 64  GERVRQIFGDERLFSNVFVYEVYRFRQQGVAIQEAEKLCRSEKVKLVIVDCFTSLY-RSE 122

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           +E    +       R ++  L  L     +    +V  NQM   +G      +   GG +
Sbjct: 123 LED---DRKQIKIKRELTSQLTFLLGMARKYDVAVVITNQMFTDVGS---GVDRPLGGPS 176

Query: 223 LKFYSSVRL------DIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           L+  S V +      ++R+   IK +    G     ++    +  
Sbjct: 177 LEHLSKVIIALERSNELRKATLIKHRWMKEGKSCFYRITDRGIEP 221


>gi|325969248|ref|YP_004245440.1| DNA repair and recombination protein RadA [Vulcanisaeta moutnovskia
           768-28]
 gi|323708451|gb|ADY01938.1| DNA repair and recombination protein RadA [Vulcanisaeta moutnovskia
           768-28]
          Length = 318

 Score = 78.7 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 59/282 (20%), Positives = 98/282 (34%), Gaps = 37/282 (13%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K L +A   +   +G   + +       FEGI  + +    +D  L  GG     I E 
Sbjct: 53  EKILRSARDIV---FGSNRVSRATDIAKSFEGITRLRTNVRAIDELL-QGGLEPKAIYEF 108

Query: 73  YGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKL--------GVD 118
            G   +GKT L        Q +      GG   ++D E A        +           
Sbjct: 109 AGEFGTGKTQLCHQLSVTVQLSQDKGGVGGAAVYLDTEEAFSPGRIINIAQRFDLDPNET 168

Query: 119 LKNLLISQPDTGEQALEITD----MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           L N+ + +        +        LV      +IV+DS+ AL  RAE +G    +    
Sbjct: 169 LDNIYVIKVINAADLEDRIKFDVVKLVEQANARLIVVDSIIALY-RAEFKGRERLAERQQ 227

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
           +   +      L          +V  NQ+ + + + +   +   GGN L    + RL +R
Sbjct: 228 RLNYILDW---LMRIAKLYNVYVVLTNQV-LDVPMGYIEIKRPAGGNVLAHAVTHRLFLR 283

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276
                K K+ +     +V  V +    PFK      +  +GI
Sbjct: 284 -----KSKEDV-----KVMEVLDSPRLPFKASAMFRITDKGI 315


>gi|15679687|ref|NP_276804.1| DNA repair and recombination protein RadB [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|6225911|sp|O27728|RADB_METTH RecName: Full=DNA repair and recombination protein radB
 gi|2622824|gb|AAB86165.1| DNA repair protein Rad51 homolog [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 234

 Score = 78.7 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 89/231 (38%), Gaps = 27/231 (11%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            + + S  +D  LG GG  +  I + YGP  SGKT + +    ++ + G    F+D E  
Sbjct: 12  RIPTES-SIDRILG-GGVERRTITQFYGPPGSGKTNITIKLAVETARRGKNTVFIDTEGG 69

Query: 107 LDSIYARKLGVDL-----KNLLISQPDTGEQALEITDMLV-----RSGAVDIIVIDSVAA 156
           L     R++  D+      ++++ +P +  +  E              + D++V+DS  A
Sbjct: 70  LSVERIRQVSGDIFDRVADSIIVFEPSSFTEQGEALQRTFSFLKTHGDSTDLVVLDSAVA 129

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPET 216
           L    E                + + +  L     R     V  NQ+    G       +
Sbjct: 130 LYRLKEGNASSFN-------LDLGRQMFLLLQMARRFDLAAVITNQIYSITGDDGREYVS 182

Query: 217 TTGGNALKFYSSVRLDIRRVG--------SIKDKDSITGNQTRVKVVKNKM 259
             GG  L+++S V +++              + ++ + G++   ++V + +
Sbjct: 183 PVGGTLLRYWSKVMVELEMGERPGERFAVLRRHRNRLEGSRVGFRIVADGI 233


>gi|83774236|dbj|BAE64361.1| unnamed protein product [Aspergillus oryzae]
          Length = 341

 Score = 78.7 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 89/260 (34%), Gaps = 36/260 (13%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  Q    + +  +S+GS   D  LG GGF    I E++G    GKT L+      +Q
Sbjct: 89  MELSHQ---RKRVVRISTGSKQFDAILG-GGFQSMSISEVFGEFRCGKTQLSHTMSVVAQ 144

Query: 93  ------KTGGTCAFVDAEHALDSIYA----RKLGVDLK----NLLISQPDTGEQALEITD 138
                    G  A++D E             + GVD      N+  ++    E  LE+ +
Sbjct: 145 LPKEMGGADGKVAYIDTEGTFRPERIAQIAERFGVDADSARENIAYARALNSEHQLELLN 204

Query: 139 MLVRSG---AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
            L +        +++IDS+     R +  G         + + ++Q L KL         
Sbjct: 205 TLSKEFTGGEYRLLIIDSIMNCF-RVDYCGRGE---LADRQQKLNQFLMKLAHMAEGLYS 260

Query: 196 I-----LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDS 244
                             +         GG+ L   S+ R+ +R      RV  I+D   
Sbjct: 261 CSGPLICGLTGYHFRIQCLRPNDGRKPVGGHVLAHASTTRVLLRKGRGDERVAKIQDSPD 320

Query: 245 ITGNQTRVKVVKNKMASPFK 264
               +    +    +  P K
Sbjct: 321 CPEQEATYVITNGGINDPDK 340


>gi|310893924|gb|ADP37899.1| RecA [Streptococcus pneumoniae]
 gi|310893926|gb|ADP37900.1| RecA [Streptococcus pneumoniae]
 gi|310893928|gb|ADP37901.1| RecA [Streptococcus pneumoniae]
 gi|310893930|gb|ADP37902.1| RecA [Streptococcus pneumoniae]
 gi|310893932|gb|ADP37903.1| RecA [Streptococcus pneumoniae]
 gi|310893934|gb|ADP37904.1| RecA [Streptococcus pneumoniae]
 gi|310893936|gb|ADP37905.1| RecA [Streptococcus pneumoniae]
 gi|310893938|gb|ADP37906.1| RecA [Streptococcus pneumoniae]
 gi|310893940|gb|ADP37907.1| RecA [Streptococcus pneumoniae]
 gi|310893942|gb|ADP37908.1| RecA [Streptococcus pneumoniae]
 gi|310893944|gb|ADP37909.1| RecA [Streptococcus pneumoniae]
          Length = 97

 Score = 78.7 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 60/96 (62%), Positives = 81/96 (84%)

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
            LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++V+DSVAAL PRAEI+GD+G+S  G
Sbjct: 2   ALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVG 61

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           +QAR+MSQA+RKL +SI+++K I +FINQ+R K+GV
Sbjct: 62  LQARMMSQAMRKLGASINKTKTIAIFINQLREKVGV 97


>gi|229597842|pdb|3ETL|A Chain A, Rada Recombinase From Methanococcus Maripaludis In Complex
           With Amppnp
 gi|229597843|pdb|3EW9|A Chain A, Rada Recombinase From Methanococcus Maripaludis In Complex
           With Amppnp And Potassium Ions
 gi|229597844|pdb|3EWA|A Chain A, Rada Recombinase From Methanococcus Maripaludis In Complex
           With Amppnp And Ammonium Ions
          Length = 322

 Score = 78.7 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 89/256 (34%), Gaps = 39/256 (15%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT-- 97
              + +  +S+GS  LD  L  GG     + E  G   SGKT +   T    Q       
Sbjct: 72  KQRQSVWRLSTGSTELDTVLA-GGIESQSVTEFAGMFGSGKTQIMHQTCVNLQMREKIFA 130

Query: 98  --------------CAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQAL- 134
                           ++D E         ++           L N  +++    +  + 
Sbjct: 131 DLEGVVEEELEAPKAVYIDTEGTFRPERVVQMAEGAGIDGQTVLDNTFVARAYNSDMQML 190

Query: 135 ---EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
              +I D++     + +++IDS+ +   R E  G         + + + + +  L     
Sbjct: 191 FAEKIEDLIKGGNNIKLVIIDSLTSTF-RNEFTGR---GKLAERQQKLGRHMATLNKLAD 246

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
              CI++  NQ+  K    FG  E   GG+ +   ++ R  +R      RV  + D   +
Sbjct: 247 LYNCIVLVTNQVAAKPDAYFGVAEQAIGGHVVGHAATFRFFLRKSKGDKRVAKLYDSPHL 306

Query: 246 TGNQTRVKVVKNKMAS 261
             ++   ++ +  +  
Sbjct: 307 PDSEAVFRITEKGIQD 322


>gi|308453438|ref|XP_003089441.1| hypothetical protein CRE_02731 [Caenorhabditis remanei]
 gi|308240341|gb|EFO84293.1| hypothetical protein CRE_02731 [Caenorhabditis remanei]
          Length = 390

 Score = 78.7 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 88/251 (35%), Gaps = 31/251 (12%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K ++     K ++ A+  +Q  +  GA             +  + +GS  LD  LG GG 
Sbjct: 95  KGISDQKAEKIMKEAMKYVQMGFTTGA-----EVHVKRSQLVQIRTGSAALDRLLG-GGI 148

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKLGVD 118
             G I E+YG   +GKT L        Q         G C ++D            +   
Sbjct: 149 ETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGKCMYIDTNATFRPERIIAIAQR 208

Query: 119 --------LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
                   L+N+ +++    E  + +      ++      ++++D   A   R E  G  
Sbjct: 209 YNMDSAHVLENIAVARAYNSEHLMALIIRAGAMMSESRYAVVIVDCATAHF-RNEYTGR- 266

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG----VMFGSPETTTGGNAL 223
                  +   +S  L+ L          ++  NQ+  ++     +     +   GG+ +
Sbjct: 267 --GDLAERQMKLSAFLKCLAKLADEYGVAVIITNQVVAQVDGGASMFQADAKKPIGGHII 324

Query: 224 KFYSSVRLDIR 234
              S+ RL ++
Sbjct: 325 AHMSTTRLSVK 335


>gi|156065967|ref|XP_001598905.1| hypothetical protein SS1G_00994 [Sclerotinia sclerotiorum 1980]
 gi|154691853|gb|EDN91591.1| hypothetical protein SS1G_00994 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 325

 Score = 78.7 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 57/256 (22%), Positives = 96/256 (37%), Gaps = 32/256 (12%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ--- 92
              G   +    +S+GS  LD  L  GGF    I E++G    GKT LA      +Q   
Sbjct: 74  AEHGHFRKKCIRISTGSKQLDACLN-GGFQTMSISEVFGEFRCGKTQLAHTMAVIAQLPK 132

Query: 93  ---KTGGTCAFVDAEHALDSIYA----RKLGVD----LKNLLISQPDTGEQALEITDMLV 141
                 G  A++D E             + GVD    L+N++ ++    E  LE+ + L 
Sbjct: 133 NMGGAEGKVAYIDTEGTFRPERIAEIAERFGVDPDQALENIVYARAQNTEMQLELLEGLA 192

Query: 142 RSGAVD---IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           ++ A D   +++IDS+ +L         +G      +   ++  LR+ T        ++ 
Sbjct: 193 QNFATDEYRLLIIDSIMSLYR----SDFIGRGELSERQSALNAFLRRATQMAEEFNLVVF 248

Query: 199 FINQMRMKIGVM----FGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGN 248
             NQ+    G              GG+ L   S+ R+ +R      RV  I D       
Sbjct: 249 MTNQVMSDPGASALFAGADGRKPAGGHILAHASTTRILLRKGRGEERVAKIVDSPDCPEC 308

Query: 249 QTRVKVVKNKMASPFK 264
           +    +    ++ P K
Sbjct: 309 EATYIITTGGISDPEK 324


>gi|124483935|emb|CAM32785.1| RecA protein [Aeromonas sp. V168]
          Length = 96

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 75/96 (78%), Positives = 85/96 (88%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA++QK G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD
Sbjct: 1   IAEAQKKGKTCAFVDAEHALDPIYAAKLGVNVXDLLISQPDTGEQALEIYDMLVRSNAVD 60

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +I++DSVAALTP AE EGDMG+S  G+QARLMSQAL
Sbjct: 61  VIIVDSVAALTPXAEXEGDMGDSHVGLQARLMSQAL 96


>gi|330506380|ref|YP_004382808.1| DNA repair and recombination protein RadB [Methanosaeta concilii
           GP-6]
 gi|328927188|gb|AEB66990.1| DNA repair and recombination protein RadB [Methanosaeta concilii
           GP-6]
          Length = 223

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 85/230 (36%), Gaps = 14/230 (6%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
              +E +  G   LD+ LG GGF  G I E+YG   SGK+ + L     +   G    F+
Sbjct: 1   MSTLERLPVGCQSLDLLLG-GGFESGIITELYGESGSGKSNIVLQLAVAAVARGFRVIFI 59

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           D E      + +  G    ++          +LE   M +R  +        +  L    
Sbjct: 60  DTEGFSAERFKQIAGPGAADIAAKIMIFEPMSLEQQAMAIREASKIAGRDLGLVILDSAT 119

Query: 162 EIEGDMGESLPGMQARL-MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
            +   + E+     AR  ++  L +L     R +  +V  NQ+   I     +     GG
Sbjct: 120 SLYRMLLEAEDSRPARRALTVQLSELQEIARRHRIPVVITNQVYTDIES---NSLRPLGG 176

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
             L+      + + + G         G + R +++K++     +  EF +
Sbjct: 177 TYLEHMCKAIIFLEKAGE--------GLR-RARLMKHRSLPENRTAEFRL 217


>gi|308493054|ref|XP_003108717.1| hypothetical protein CRE_10879 [Caenorhabditis remanei]
 gi|308248457|gb|EFO92409.1| hypothetical protein CRE_10879 [Caenorhabditis remanei]
          Length = 390

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 88/251 (35%), Gaps = 31/251 (12%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K ++     K ++ A+  +Q  +  GA             +  + +GS  LD  LG GG 
Sbjct: 95  KGISDQKAEKIMKEAMKYVQMGFTTGA-----EVHVKRSQLVQIRTGSAALDRLLG-GGI 148

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKLGVD 118
             G I E+YG   +GKT L        Q         G C ++D            +   
Sbjct: 149 ETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGKCMYIDTNATFRPERIIAIAQR 208

Query: 119 --------LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
                   L+N+ +++    E  + +      ++      ++++D   A   R E  G  
Sbjct: 209 YNMDSAHVLENIAVARAYNSEHLMALIIRAGAMMSESRYAVVIVDCATAHF-RNEYTGR- 266

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG----VMFGSPETTTGGNAL 223
                  +   +S  L+ L          ++  NQ+  ++     +     +   GG+ +
Sbjct: 267 --GDLAERQMKLSAFLKCLAKLADEYGVAVIITNQVVAQVDGGASMFQADAKKPIGGHII 324

Query: 224 KFYSSVRLDIR 234
              S+ RL ++
Sbjct: 325 AHMSTTRLSVK 335


>gi|73668572|ref|YP_304587.1| DNA repair and recombination protein RadB [Methanosarcina barkeri
           str. Fusaro]
 gi|72395734|gb|AAZ70007.1| DNA repair protein [Methanosarcina barkeri str. Fusaro]
          Length = 243

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 84/228 (36%), Gaps = 21/228 (9%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +SSG   LD  LG GGF KG + +I+G   +GKT + +    +  K G    F+D E   
Sbjct: 26  LSSGCKPLDELLG-GGFEKGIVTQIFGAAGTGKTNVCIQLAVECVKQGQRVIFIDTEGLS 84

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS-----GAVDIIVIDSVAALTPRAE 162
            + + +  G + K L  S         E     VR           +VI   A    R E
Sbjct: 85  PTRFKQIAGDNAKELARSIIIYEPLNFEEQYAAVREVERIASENIGLVILDSATSYYRFE 144

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           +E    +       R ++  +  L +   +     V  NQ+   I           GG++
Sbjct: 145 LED---DETGMKSRRELASQIGYLHALARKYGFAAVITNQVYSDITSGGVR---PLGGSS 198

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           L+  S   + + + G         G +  + + K++        EF I
Sbjct: 199 LEHISKTIIQLEKTGE--------GTRRAI-LYKHRSCPEGSSAEFRI 237


>gi|154151968|ref|YP_001405586.1| DNA repair and recombination protein RadB [Candidatus Methanoregula
           boonei 6A8]
 gi|154000520|gb|ABS56943.1| DNA repair and recombination protein RadB [Methanoregula boonei
           6A8]
          Length = 226

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 93/226 (41%), Gaps = 26/226 (11%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           ++G+  LD  LG GG     I ++YG  +SGK+TL +       + GG+  F+D+E    
Sbjct: 8   TTGNAALDRLLG-GGLEPRTITQLYGGPASGKSTLCMIASVSCLRAGGSVIFIDSEGFSI 66

Query: 109 SIYARKLGVDL----KNLLISQPDTGEQ---ALEITDMLVRSGAVDIIVIDSVAALTPRA 161
             + +  G D       L + +P   +Q    +  +D + R     ++V+DS  AL    
Sbjct: 67  ERFRQIAGNDTAAIADRLFLFEPVDFDQQGGMITESDKIFRQHKPGLVVLDSATALYRTD 126

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
             +G           + +++ + ++     R     +  NQ+ M       +     GG 
Sbjct: 127 LEKGR-------DAMQQLTRQMLQILGYTKRYDLPALVTNQVYMDTTRNTFAG---LGGT 176

Query: 222 ALKFYS--SVRLDI------RRVGSIKDKDSITGNQTRVKVVKNKM 259
           +L+  S   VRLD       RR   +K +    G     ++V++ +
Sbjct: 177 SLEHISKAIVRLDRLETPGWRRATLVKHRSRPEGASFDFEIVQDGI 222


>gi|84489183|ref|YP_447415.1| DNA repair and recombination protein RadB [Methanosphaera
           stadtmanae DSM 3091]
 gi|121731871|sp|Q2NHD1|RADB_METST RecName: Full=DNA repair and recombination protein radB
 gi|84372502|gb|ABC56772.1| RadB [Methanosphaera stadtmanae DSM 3091]
          Length = 232

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 104/232 (44%), Gaps = 27/232 (11%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + + S  LD  LG GG  KG I + YGP  SGKT +AL  + ++ K G    ++D E  L
Sbjct: 13  IPTNS-SLDKLLG-GGIEKGCITQFYGPPGSGKTNIALKILYEATKNGSKAIYMDTEGGL 70

Query: 108 DSIYARK-----LGVDLKNLLISQPDTGEQAL----EITDMLVRSGAVDIIVIDSVAALT 158
                ++      G   KN+ I +P + ++ +     I D+L +  ++D+++IDS+ AL 
Sbjct: 71  SLERIQQIAGTDFGSISKNIYILEPKSFDEQILDIQNIEDILKKDKSIDMLIIDSIVALY 130

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
                   + +  P    + + + + KL          +V  NQ+           E   
Sbjct: 131 -------RVEDGDPSEINKRLGRLMAKLLRLSREYNVAIVITNQIYSPFDSDDLIIE-PI 182

Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           GG  LK++S + ++I +         +   +    + ++K  +P + ++F+I
Sbjct: 183 GGTVLKYWSKIIIEIEKS--------VDSLKRTATLQRHKTKAPGQSIKFEI 226


>gi|16605548|emb|CAC86604.1| Rad51B protein [Physcomitrella patens]
 gi|16605579|emb|CAC82997.1| Rad51B protein [Physcomitrella patens]
          Length = 342

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 98/277 (35%), Gaps = 38/277 (13%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFE---GIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           +A + +I    GK   M   S   + E    +  +++GS   D  L  GG   G I EIY
Sbjct: 71  DAKVDKIIEAAGKLVPMGFTSAKQMHEQRAELIQITTGSKEFDSIL-EGGIETGSITEIY 129

Query: 74  GPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKLGVD--------L 119
           G   SGK+ +        Q         G   ++DAE         ++           L
Sbjct: 130 GEFRSGKSQICHTLCVTCQLPLDQGGGEGKALYIDAEGTFRPQRLLQIAEKYGLNGQDVL 189

Query: 120 KNLLISQPDTGEQA---LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N+  ++    +     L     ++      ++V+DS  AL  R +  G    +      
Sbjct: 190 DNVAYARAYNTDHQTKLLVEAASMMAETRFALMVVDSATALY-RTDYSGRGELAARQFHL 248

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIG---VMFGSPETTTGGNALKFYSSVRLDI 233
               +  +K+          +V  NQ+  ++    +  G      GGN +   S+ RL +
Sbjct: 249 AKFLRGCQKM---ADEFGIAVVVTNQVVAQVDGSAMFNGPQFKPIGGNIIAHASTTRLSV 305

Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           R+           G +  +KVV +   +  ++  F I
Sbjct: 306 RKGR---------GEERVIKVVASPCLAE-QEARFQI 332


>gi|48477813|ref|YP_023519.1| DNA repair and recombination protein RadA [Picrophilus torridus DSM
           9790]
 gi|73913727|sp|Q6L126|RADA_PICTO RecName: Full=DNA repair and recombination protein radA
 gi|48430461|gb|AAT43326.1| DNA repair and recombination protein radA [Picrophilus torridus DSM
           9790]
          Length = 323

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 95/246 (38%), Gaps = 28/246 (11%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
            + I+ +++GS  LD  LG GG     I E +G   SGKT +       +          
Sbjct: 83  RKEIKKLTTGSSNLDNLLG-GGLETQSITEFFGEFGSGKTQIMHQLAVNATMPVEKNGFD 141

Query: 96  GTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDM---LVRSG 144
                +D E+        ++           L+ + +++       + + +    + R  
Sbjct: 142 SDVLIIDTENTFRPERIIQMARAKDLDPDQTLERIHVARAYNSHHQILLAEKAADMAREY 201

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            + ++++DS+ +   R+E  G         + +L+++ +  L    +    ++   NQ+ 
Sbjct: 202 KIRLLIVDSLTSHF-RSEYVGR---GSLAERQQLLNRHMHDLLKFGTIYNAVIAVTNQVS 257

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK------DKDSITGNQTRVKVVKNK 258
               V FG P    GGN +   ++ R+ +R+  + K      D   +   +T + + ++ 
Sbjct: 258 ANPAVFFGDPMNPIGGNIVGHTATFRIYLRKAKAGKRIARLIDSPYLPEGETVITITESG 317

Query: 259 MASPFK 264
           +    K
Sbjct: 318 ITDGEK 323


>gi|307595014|ref|YP_003901331.1| Rad51 domain-containing protein [Vulcanisaeta distributa DSM 14429]
 gi|307550215|gb|ADN50280.1| Rad51 domain protein [Vulcanisaeta distributa DSM 14429]
          Length = 318

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 58/282 (20%), Positives = 98/282 (34%), Gaps = 37/282 (13%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K L +A   +   +G   + +       FEGI  + +    +D  L  GG     I E 
Sbjct: 53  EKILRSARDIV---FGSNRVSRATDLAKNFEGIIRLRTNVRAIDDLL-QGGLEPKAIYEF 108

Query: 73  YGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKL--------GVD 118
            G   +GKT L        Q +      GG   ++D E A        +           
Sbjct: 109 AGEFGTGKTQLCHQLSVTVQLSQDKGGVGGAAVYLDTEEAFSPNRIVNIAQRFDLDPNEA 168

Query: 119 LKNLLISQPDTGEQALEITD----MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           L N+ + +        +        LV      +IV+DS+ AL  RAE +G    +    
Sbjct: 169 LDNIYVIKVINAADLEDRIKFDVVKLVEQANAKLIVVDSIIALY-RAEFKGRERLAERQQ 227

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
           +   +      L          +V  NQ+ + + + +   +   GGN L    + RL ++
Sbjct: 228 RLNYILDW---LMRIAKVYNVYVVLTNQV-LDVPMGYIEVKRPAGGNVLAHAVTHRLFLK 283

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276
                K K+ I     +V  V +    PFK      +  +G+
Sbjct: 284 -----KSKEDI-----KVMEVLDSPRLPFKASAMFRITDKGV 315


>gi|257077010|ref|ZP_05571371.1| DNA repair and recombination protein RadA [Ferroplasma acidarmanus
           fer1]
          Length = 335

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 89/218 (40%), Gaps = 22/218 (10%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI---AQSQKTGG 96
              + +  +S+G+ GLD  +G GG     I E +G   SGKT + L         ++ GG
Sbjct: 94  KRRKEVRKLSTGAQGLDNLIG-GGLETQSITEFFGEFGSGKTQIMLQLAVNATMPEEQGG 152

Query: 97  T---CAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQAL---EITDMLVR 142
                  +D E+        ++           LK + +++       +   E    + +
Sbjct: 153 LNSDVLIIDTENTFRPERVIQMAKAKNLDPDETLKRIHVARAYNAHHQILLAEKASDIAK 212

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
              + ++++DS+ +   R+E  G         + +L+++ +  L    +    ++   NQ
Sbjct: 213 EFPIKLLIVDSLTSHF-RSEYVGR---GSLAERQQLLNKHMHDLLKFGTIFNAVIAVTNQ 268

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           +     V FG P T  GGN +   ++ RL +R+  + K
Sbjct: 269 VSANPAVFFGDPMTPIGGNIVGHTATFRLYLRKAKAGK 306


>gi|296214172|ref|XP_002807247.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein RAD51 homolog
           1-like [Callithrix jacchus]
          Length = 339

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 31/246 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              I  ++ G   LD  L  GG   G I E++G   +GKT +        Q         
Sbjct: 96  RSEIIQITXGCKELDNLL-QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGE 154

Query: 96  GTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQA---LEITDMLVRSG 144
           G   ++D E          +           L N+  ++    +     L     ++   
Sbjct: 155 GKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVES 214

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  AL  R +  G    S   M    +++ LR L          +V  NQ+ 
Sbjct: 215 RYALLIVDSATALY-RTDYSGRGELSARQMH---LARFLRMLLRLADEFGVAVVITNQVV 270

Query: 205 MKIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255
            ++    +    P+   GGN +   S+ RL +R      R+  I D   +   +    + 
Sbjct: 271 AQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 330

Query: 256 KNKMAS 261
            + +  
Sbjct: 331 ADGVGD 336


>gi|110669058|ref|YP_658869.1| DNA repair and recombination protein RadB [Haloquadratum walsbyi
           DSM 16790]
 gi|109626805|emb|CAJ53273.1| DNA repair and recombination protein RadB [Haloquadratum walsbyi
           DSM 16790]
          Length = 257

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/252 (19%), Positives = 86/252 (34%), Gaps = 42/252 (16%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G   LD  LG GGF +G + ++YGP ++GKT + L     +  T     +VD E   
Sbjct: 5   LSTGCQSLDSLLG-GGFERGTVTQVYGPPAAGKTNIMLSAALHTAATDSMAVYVDTEGIS 63

Query: 108 DSIYARKLGVD------------LKNLLISQPDTGE-QALEITDMLVRSGAVDIIVIDSV 154
              + +                    +++S     E QA  + D    +   D+I++DS 
Sbjct: 64  SDRFRQIADGVVDDSSSVDRDSLTSQVIMSDAHDFEAQATAVRDTAEFANRADLIILDSA 123

Query: 155 AALTP------------------RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
                                   +E       +  G   R ++  +  L S   +    
Sbjct: 124 TGFYRLQRTLGGTLENNIGTDGASSENTERTETADGGDTLRRLTSQITHLLSLARKHNLA 183

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSS--VRLDIRRVGS-----IKDKDSITGNQ 249
           +V  NQ+               GG  L+ ++   +RL+  R G       K +   TG  
Sbjct: 184 VVITNQVFTDPDTDRVR---PLGGYTLEHWTGAVLRLERFRGGKRRATLEKHRSKPTGES 240

Query: 250 TRVKVVKNKMAS 261
               +    +A 
Sbjct: 241 VTFVITDTGVAD 252


>gi|148508123|gb|ABQ75917.1| DNA repair and recombination protein RadB [uncultured haloarchaeon]
          Length = 257

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/252 (19%), Positives = 86/252 (34%), Gaps = 42/252 (16%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G   LD  LG GGF +G + ++YGP ++GKT + L     +  T     +VD E   
Sbjct: 5   LSTGCQSLDSLLG-GGFERGTVTQVYGPPAAGKTNIMLSAALHTAATDSMAVYVDTEGIS 63

Query: 108 DSIYARKLGVD------------LKNLLISQPDTGE-QALEITDMLVRSGAVDIIVIDSV 154
              + +                    +++S     E QA  + D    +   D+I++DS 
Sbjct: 64  SDRFRQIADGVVDDSSSVDRDSLTSQVIMSDAHDFEAQATAVRDTAEFANRADLIILDSA 123

Query: 155 AALTP------------------RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
                                   +E       +  G   R ++  +  L S   +    
Sbjct: 124 TGFYRLQRTLGGTLENNIGTDGASSENTERTETADGGDTLRRLTSQITHLLSLARKHNLA 183

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSS--VRLDIRRVGS-----IKDKDSITGNQ 249
           +V  NQ+               GG  L+ ++   +RL+  R G       K +   TG  
Sbjct: 184 VVITNQVFTDPDTDRVR---PLGGYTLEHWTGAVLRLERFRGGKRRATLEKHRSKPTGES 240

Query: 250 TRVKVVKNKMAS 261
               +    +A 
Sbjct: 241 ATFVITDTGVAD 252


>gi|303279168|ref|XP_003058877.1| Rad51 DNA recombinase 1 [Micromonas pusilla CCMP1545]
 gi|226460037|gb|EEH57332.1| Rad51 DNA recombinase 1 [Micromonas pusilla CCMP1545]
          Length = 411

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 59/283 (20%), Positives = 100/283 (35%), Gaps = 37/283 (13%)

Query: 10  VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69
           V+K KA  AA+  +   +   +++Q     ++ E   ++S+GS  LD  LG GGF  G +
Sbjct: 79  VEKLKA--AAMKVVPLGFTTASMVQ-----AVRESTIMISTGSSKLDELLG-GGFESGSL 130

Query: 70  VEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIY----ARKLGVDL 119
            EIYG   +GKT L        Q         G   ++D E           A + G+D 
Sbjct: 131 TEIYGEFRTGKTQLCHTLAVTCQLPLAQGGAEGKAMYIDTEGTFRPQRLIAIAERFGMDS 190

Query: 120 KNLLISQPDTGEQALEI-------TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
             +L +         E           ++      +I++DSV  L  R E EG    S  
Sbjct: 191 AAVLDNVAYAKAHNCEHQSELLVAAAGMMAEARFGVIIVDSVTNLY-RTEYEGRGELSAR 249

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRM-KIGVMFGSPETTTGGNALKFYSSVRL 231
            M      + L +L      +  +   +             +     GGN +   S+ RL
Sbjct: 250 QMHLGKFLRQLARLADEFGVAVVVTNQVVANPDGNAMFAGANAMKPIGGNIMAHASTTRL 309

Query: 232 DIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
            +R+             + R+  +      P  + +F   +  
Sbjct: 310 ALRKGR----------GENRIAKIACSPVLPESEAQFSRRWAS 342


>gi|50311197|ref|XP_455622.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644758|emb|CAG98330.1| KLLA0F11957p [Kluyveromyces lactis]
          Length = 329

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 92/247 (37%), Gaps = 32/247 (12%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
            I + +  +S+GS   D  LG GG     I E++G    GKT L+      +Q       
Sbjct: 83  QIRQAVMSISTGSKQFDSVLG-GGIMTMSITEVFGEFRCGKTQLSHTLCVTAQLPKELNG 141

Query: 94  TGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQAL---EITDMLVR 142
             G  A++D E        +++           L+N+  ++    E  +   E     + 
Sbjct: 142 PEGKVAYIDTEGTFRPERIKQIAQGYDLDPEVCLENISYARALNSEHQMELLEQLGEELS 201

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           SG   ++++DS+ A   R +  G         + + ++Q L +L      +   +   NQ
Sbjct: 202 SGEYRLLIVDSIMA-NFRVDYSGRGE---LNERQQKLNQHLSRLNRIAEENNIAVFMTNQ 257

Query: 203 MRMKIGVM----FGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRV 252
           ++   G              GG+ L   S+ R+ +R      RV  ++D   +   +   
Sbjct: 258 VQSDPGASALFASADGRKPVGGHVLAHASATRILLRKGRGDERVAKLQDSPDMPEKECVY 317

Query: 253 KVVKNKM 259
            + +  +
Sbjct: 318 VIGERGI 324


>gi|52550007|gb|AAU83856.1| recombinase [uncultured archaeon GZfos34G5]
          Length = 315

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 82/218 (37%), Gaps = 25/218 (11%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGT 97
            I  +++GS   D  LG GG     + E YG   SGKT +A       Q         G+
Sbjct: 75  EIGKLTTGSTSFDDLLG-GGLETQALTEFYGEFGSGKTQIAHQIAVNVQLPPENGGLNGS 133

Query: 98  CAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQAL-------EITDMLVR 142
              +D E+       + +           LKN+ +++       +        + + L+ 
Sbjct: 134 VIIIDTENTFRPERIKDMAEGASLDPDEILKNIHVARAYNSNHQILLVDKAERLAEELID 193

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           +     ++I   A    R+E  G         + + +++ L         +  +++  NQ
Sbjct: 194 TEKPVRLLIVDSATAHFRSEYVGR---GTLADRQQKINKHLHDTLRFGDLNNAVVMITNQ 250

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           ++++    FG P    GG+ +   ++ RL +R+    K
Sbjct: 251 VQVRPDAFFGDPTRPIGGHVVGHTATFRLYLRKSKGEK 288


>gi|73669826|ref|YP_305841.1| DNA repair and recombination protein RadA [Methanosarcina barkeri
           str. Fusaro]
 gi|121695787|sp|Q46A31|RADA_METBF RecName: Full=DNA repair and recombination protein radA
 gi|72396988|gb|AAZ71261.1| DNA repair protein [Methanosarcina barkeri str. Fusaro]
          Length = 325

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 92/255 (36%), Gaps = 42/255 (16%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK------ 93
              + +  +++G +  D  +G GG     I E+YG   SGKT LA       Q       
Sbjct: 74  ERRKMVGKLTTGCMEFDEMMG-GGIETQAITELYGEFGSGKTQLAHQFAVNVQMDREHGG 132

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDL--------------KNLLISQPDTGEQALEITDM 139
             G+   +D E+        ++   L              +N+ +++       + + D 
Sbjct: 133 LNGSVIIIDTENTFRPERIAQMVKGLSEKYGMELDPEEFLQNIHVARAYNSNHQILLVDS 192

Query: 140 L--------VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
                         V ++++DS+ A   RAE  G         + + +++ +  L     
Sbjct: 193 ATDLANELREMGKPVRLLIVDSLMAHF-RAEYVGR---GTLADRQQKLNKHMHGLLRFGD 248

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
                +V  NQ+  K    FG P    GG+ +   ++ RL +R+           G++  
Sbjct: 249 LFNASVVVTNQVMAKPDAFFGDPTRPVGGHVVGHTATFRLYLRKSK---------GDKRI 299

Query: 252 VKVVKNKMASPFKQV 266
           +++V +      + V
Sbjct: 300 IRLVDSPNLPEGEAV 314


>gi|126179861|ref|YP_001047826.1| DNA repair and recombination protein RadA [Methanoculleus
           marisnigri JR1]
 gi|166218763|sp|A3CWU4|RADA_METMJ RecName: Full=DNA repair and recombination protein radA
 gi|125862655|gb|ABN57844.1| DNA repair and recombination protein RadA [Methanoculleus
           marisnigri JR1]
          Length = 324

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 94/256 (36%), Gaps = 38/256 (14%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
              + I+ + +     D  +G GG     I E+YG   SGK+ L       +Q       
Sbjct: 74  DKRKDIKKLRTLVPEFDELVG-GGLETQAITEVYGEFGSGKSQLVHQMAVNAQLPEELGG 132

Query: 94  TGGTCAFVDAEHALDSIYARKL-------------GVDLKNLLISQPDTGEQALEITDML 140
            GG   +VD E+        ++                L+ + +++  + +  + + +  
Sbjct: 133 LGGGVIYVDTENTFRPERIEQMLNGLPEEAEIGEIEEVLERIHVARAHSSDHQMLLLETA 192

Query: 141 --------VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                        V + VIDS+ +L  R+E  G         + + +++ +  L   I  
Sbjct: 193 RELANDLRTSDYPVRLFVIDSLTSLF-RSEYAGR---GTLAPRQQKLNRHMHDLLKLIDD 248

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSIT 246
              + +  NQ+    G++FG P    GGN +   ++ RL +R      RV  + D  ++ 
Sbjct: 249 HNAVGLVTNQVMSNPGILFGDPTKPIGGNIVGHTATFRLYLRKSKGGKRVARLVDSPNLP 308

Query: 247 GNQTRVKVVKNKMASP 262
             +    V +  +   
Sbjct: 309 EGEAAFMVEQAGLKPC 324


>gi|255086169|ref|XP_002509051.1| DMC1 DNA recombinase [Micromonas sp. RCC299]
 gi|226524329|gb|ACO70309.1| DMC1 DNA recombinase [Micromonas sp. RCC299]
          Length = 359

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 65/283 (22%), Positives = 108/283 (38%), Gaps = 38/283 (13%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K LEAA   + +    G+ +      S+ +    + +G+  +D  LG GG P   I E+
Sbjct: 88  DKMLEAANKLLPKD-QAGSFVTAKEWMSMRKDTINIRTGADTIDAILG-GGVPTRSITEM 145

Query: 73  YGPESSGKTTLALHTIAQSQ---KTGGTC---AFVDAEHALDSIYARKLGVD-------- 118
           YG    GKT +       +Q     GG C   AF+D E    +    ++           
Sbjct: 146 YGEWRCGKTQICHTLAVTTQLPLDEGGGCAKVAFIDTEGTFRAERIVQIAERFNLDSDAV 205

Query: 119 LKNLLISQPDTGEQA---LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           L N+L+++  T E     L +           I++IDS+ A          +G      +
Sbjct: 206 LDNILVARTFTHEMMDNALTLLAGKFSEEPFKILIIDSIMAHFR----VDFIGRGELSER 261

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM---FGSPETTTGGNALKFYSSVRLD 232
            + + Q L KL          +V+ NQ++     M      P+   GG+ L   S VRL 
Sbjct: 262 QQRLGQFLAKLNKIADEFNIAVVYTNQVQADPSGMSFAGMDPKKAIGGHVLAHASHVRLS 321

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275
           +R+           G+   +KVV        K+ E + +  +G
Sbjct: 322 VRKGR---------GDARVIKVVDA---PNLKEAEGEFIITDG 352


>gi|45358785|ref|NP_988342.1| DNA repair and recombination protein RadA [Methanococcus
           maripaludis S2]
 gi|46397877|sp|Q977P5|RADA_METMP RecName: Full=DNA repair and recombination protein radA
 gi|45047651|emb|CAF30778.1| DNA repair and recombination protein radA [Methanococcus
           maripaludis S2]
          Length = 322

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 89/256 (34%), Gaps = 39/256 (15%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT-- 97
              + +  +S+GS  LD  L  GG     + E  G   SGKT +   T    Q       
Sbjct: 72  KQRQSVWRLSTGSTELDTVLA-GGIESQSVTEFAGMFGSGKTQIMHQTCVNLQIREKIFA 130

Query: 98  --------------CAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQAL- 134
                           ++D E         ++           L N  +++    +  + 
Sbjct: 131 DLEGVVEEELEAPKAVYIDTEGTFRPERVVQMAEGAGIDGQTVLDNTFVARAYNSDMQML 190

Query: 135 ---EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
              +I D++     + +++IDS+ +   R E  G         + + + + +  L     
Sbjct: 191 FAEKIEDLIKGGNNIKLVIIDSLTSTF-RNEFTGR---GKLAERQQKLGRHMATLNKLAD 246

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
              CI++  NQ+  K    FG  E   GG+ +   ++ R  +R      RV  + D   +
Sbjct: 247 LYNCIVLVTNQVAAKPDAYFGVAEQAIGGHVVGHAATFRFFLRKSKGDKRVAKLYDSPHL 306

Query: 246 TGNQTRVKVVKNKMAS 261
             ++   ++ +  +  
Sbjct: 307 PDSEAVFRITEKGIQD 322


>gi|82617156|emb|CAI64063.1| DNA repair and recombination protein [uncultured archaeon]
 gi|82617268|emb|CAI64174.1| DNA repair and recombination protein [uncultured archaeon]
 gi|268323001|emb|CBH36589.1| DNA repair and recombination protein radA [uncultured archaeon]
          Length = 315

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 82/218 (37%), Gaps = 25/218 (11%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGT 97
            I  +++GS   D  LG GG     + E YG   SGKT +A       Q         G+
Sbjct: 75  EIGKLTTGSTSFDDLLG-GGLETQALTEFYGEFGSGKTQIAHQLAVNVQLPPENGGLNGS 133

Query: 98  CAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQAL-------EITDMLVR 142
              +D E+       + +           LKN+ +++       +        + + L+ 
Sbjct: 134 VIIIDTENTFRPERIKDMAEGASLDPDEILKNIHVARAYNSNHQILLVDKAERLAEELID 193

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           +     ++I   A    R+E  G         + + +++ L         +  +++  NQ
Sbjct: 194 TEKPVRLLIVDSATAHFRSEYVGR---GTLADRQQKINKHLHDTLRFGDLNNAVVMITNQ 250

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           ++++    FG P    GG+ +   ++ RL +R+    K
Sbjct: 251 VQVRPDAFFGDPTRPIGGHVVGHTATFRLYLRKSKGEK 288


>gi|154305506|ref|XP_001553155.1| hypothetical protein BC1G_08522 [Botryotinia fuckeliana B05.10]
 gi|150853309|gb|EDN28501.1| hypothetical protein BC1G_08522 [Botryotinia fuckeliana B05.10]
          Length = 357

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 86/254 (33%), Gaps = 30/254 (11%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ--- 92
              G   +    +S+GS  LD  L  GGF    I E+YG    GKT LA      +Q   
Sbjct: 108 AEHGHFRKKCIRISTGSKQLDACLN-GGFQTMSISEVYGEFRCGKTQLAHTLAVIAQLPK 166

Query: 93  ---KTGGTCAFVDAEHALDSIYA----RKLGVDLKNLLISQPD-----TGEQALEITDML 140
                 G  A++D E             + GVD    L +        T ++ LE     
Sbjct: 167 EMGGAEGKVAYIDTEGTFRPERISEIAERFGVDPDQALENIVYARAHNTEQELLEGLAQN 226

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
             +    +++IDS+ AL         +G      +   ++  LRK T        ++   
Sbjct: 227 FATDEYRLLIIDSIMALYR----SDFIGRGELSERQGALNAFLRKATQMAEEFNLVVFMT 282

Query: 201 NQMRMKIGVM----FGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQT 250
           NQ+    G              GG+ L   S+ R+ +R      RV  + D       + 
Sbjct: 283 NQVMSDPGASALFAGADGRKPAGGHILAHASTTRVLLRKGRGEERVAKVVDSPDCPEREA 342

Query: 251 RVKVVKNKMASPFK 264
              +    +  P K
Sbjct: 343 TYIITTGGINDPEK 356


>gi|298676052|ref|YP_003727802.1| DNA repair and recombination protein RadA [Methanohalobium
           evestigatum Z-7303]
 gi|298289040|gb|ADI75006.1| DNA repair and recombination protein RadA [Methanohalobium
           evestigatum Z-7303]
          Length = 325

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 93/250 (37%), Gaps = 42/250 (16%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
              + +  +S+G    D  +  GG     I E+YG   SGKT +A       Q       
Sbjct: 74  ERRKQVGKLSTGCSEFDEMM-EGGIDTQSITELYGEFGSGKTQIAHQLAVNVQLPNEQGG 132

Query: 94  TGGTCAFVDAEHALDSIYARKLGVD--------------LKNLLISQPDTGEQALEITDM 139
             G+  F+D E+       +++                 LKN+ +++       + + D 
Sbjct: 133 LNGSVIFIDTENTFRPERIKQMVQGASEHHNIDYDPEEFLKNIHVARAYNSNHQILLMDS 192

Query: 140 LVR--------SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
            +            V ++++DS+ A   RAE    +G      + + +++ L  L     
Sbjct: 193 AMELAEESKNWEQPVRLLIVDSLTAHF-RAEY---IGRGTLADRQQKLNKHLHALQRFSD 248

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
               +++  NQ+  K    FG P    GG+ +   ++ R+ +R+           G++  
Sbjct: 249 LYNAVIIVTNQVMSKPDAFFGDPTKPIGGHIIGHTATFRMYLRKSK---------GDKRI 299

Query: 252 VKVVKNKMAS 261
           V++V +    
Sbjct: 300 VRLVDSPNLP 309


>gi|551905|gb|AAA25436.1| sequence derived from a PCR product [Mycoplasma pulmonis]
          Length = 102

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 61/102 (59%), Positives = 86/102 (84%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F+D EH++D +YA+ LG+D+ NLLISQPD+GEQALEI D+L +SG++D+IV+DSVAAL P
Sbjct: 1   FIDVEHSIDPVYAKNLGIDIDNLLISQPDSGEQALEIVDILAKSGSIDLIVVDSVAALVP 60

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
            AE+ G+M +   G+QARLMS+ALRK+T S+S++K  ++FIN
Sbjct: 61  EAELNGEMKDQSIGLQARLMSKALRKITGSLSKNKTSVIFIN 102


>gi|82617212|emb|CAI64118.1| DNA repair and recombination protein [uncultured archaeon]
 gi|268322944|emb|CBH36532.1| DNA repair and recombination protein radA [uncultured archaeon]
          Length = 315

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 82/223 (36%), Gaps = 27/223 (12%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
                I  +++GS  LD  +G GG     + E YG   SGKT +A       Q       
Sbjct: 71  ERRHNIGKLTTGSKSLDDLIG-GGLETQALTEFYGEFGSGKTQIAHQLAVNVQLPPEKGG 129

Query: 94  TGGTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQALEITDM------ 139
             G+   +D E+       + +           LKN+ +++       + + +       
Sbjct: 130 LDGSAIIIDTENTFRPDRIKDMSEGAELDYNDILKNIHVARSYNSNHQILLVEKAGALAE 189

Query: 140 --LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
                   V +++IDS  A   R+E  G         + + +++ L         +  ++
Sbjct: 190 ELKATEKPVRLMIIDSATAQF-RSEYVGR---GTLADRQQKINRHLHDALKFGDLNNAVV 245

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           +  NQ+  K    FG P    GG+ +   ++ RL +R+    K
Sbjct: 246 MITNQVMAKPDAFFGDPTRPIGGHIVGHTATFRLYLRKSKGEK 288


>gi|148642671|ref|YP_001273184.1| DNA repair and recombination protein RadB [Methanobrevibacter
           smithii ATCC 35061]
 gi|222445832|ref|ZP_03608347.1| hypothetical protein METSMIALI_01476 [Methanobrevibacter smithii
           DSM 2375]
 gi|166218770|sp|A5UKT8|RADB_METS3 RecName: Full=DNA repair and recombination protein radB
 gi|148551688|gb|ABQ86816.1| DNA repair protein, RadB [Methanobrevibacter smithii ATCC 35061]
 gi|222435397|gb|EEE42562.1| hypothetical protein METSMIALI_01476 [Methanobrevibacter smithii
           DSM 2375]
          Length = 234

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 90/241 (37%), Gaps = 27/241 (11%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99
           + FE    + + S G+D  L  GG  KG + +I+GP  SGK+ ++L       K G    
Sbjct: 5   ANFEDNHKIPTNS-GIDNLL-DGGVEKGTVTQIFGPPGSGKSNISLVLAVNVAKQGKKVV 62

Query: 100 FVDAEHALDSIYARKLGVD-----LKNLLISQPDTGEQALEITDMLV-----RSGAVDII 149
           +VD E  +     +++  +     + N+++ +P +  +  E    +          VD+ 
Sbjct: 63  YVDTEGGISINRIKQIAGEDFPKIVNNIIVFEPTSFLEQNENLKTIELWIRKHHDDVDLC 122

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DS  AL         + +       + + + +  L          +V  NQ+      
Sbjct: 123 VLDSAVALY-------RVDDMKSSRLNKELGKQMGILAKIARNYDVAVVLTNQIYSSFDD 175

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
                    GG  L+++S   + + R            N+    + +++     KQ  F 
Sbjct: 176 DNKDVVKAVGGTILQYWSKTIIQLERNDEF--------NKRVATLKRHRSIGEGKQATFK 227

Query: 270 I 270
           I
Sbjct: 228 I 228


>gi|16605546|emb|CAC86603.1| Rad51A protein [Physcomitrella patens]
 gi|16605577|emb|CAC82996.1| Rad51A protein [Physcomitrella patens]
          Length = 342

 Score = 77.6 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 90/250 (36%), Gaps = 35/250 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           +++G+   D  L  GG   G I EIYG   SGK+ +        Q         G   ++
Sbjct: 105 ITTGAKEFDNIL-EGGIETGSITEIYGEFRSGKSQICHTLCVTCQLPLDQGGGEGKALYI 163

Query: 102 DAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIV 150
           DAE         ++           L N+  ++    +  +++      ++      ++V
Sbjct: 164 DAEGTFRPQRLLQIAEKYGLNGQDVLDNVAYARAYNTDHQMKLLVEAASMMAETRFALMV 223

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG-- 208
           +DS  AL  R +  G    +   +      +  +K+          +V  NQ+  ++   
Sbjct: 224 VDSSTALY-RTDYSGRGELAARQVHLAKFLRGCQKI---ADEFGIAVVITNQVVAQVDGS 279

Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
            +  G      GGN +   S+ RL +R+           G +  +KVV +   +  ++  
Sbjct: 280 AMFNGPQHKPIGGNIIAHASTTRLSVRKGR---------GEERVIKVVASPCLAE-QEAR 329

Query: 268 FDIMYGEGIS 277
           F I     + 
Sbjct: 330 FQITNEGAVD 339


>gi|87248011|gb|ABD36058.1| RecA [Borrelia lusitaniae]
          Length = 60

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/59 (69%), Positives = 50/59 (84%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
           ALGIGG+P+GRI+E++GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+ LG
Sbjct: 1   ALGIGGYPRGRIIEVFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALG 59


>gi|91774054|ref|YP_566746.1| DNA repair and recombination protein RadB [Methanococcoides
           burtonii DSM 6242]
 gi|121691579|sp|Q12U80|RADB_METBU RecName: Full=DNA repair and recombination protein radB
 gi|91713069|gb|ABE52996.1| DNA repair and recombination protein RadB [Methanococcoides
           burtonii DSM 6242]
          Length = 225

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 86/226 (38%), Gaps = 21/226 (9%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           S    LD  LG GGF  G + +I+G   SGKT + L    +  K G    F+D E     
Sbjct: 10  SSCKPLDELLG-GGFESGVVTQIFGEAGSGKTNICLQLAIECVKKGKKAIFIDTEGLSAD 68

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVR-----SGAVDIIVIDSVAALTPRAEIE 164
            + +  G + + +          + E     VR     S     ++I   A    R E++
Sbjct: 69  RFKQIAGENARKIAQDIIIFEPHSFEEQYSAVRETEKISTENVGVIIVDSATAYYRFELD 128

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
               E       R +S  +  L S   +   ++V  NQ+   I     +     GG++L+
Sbjct: 129 D---EDSSIRTRRELSNQIGFLHSLARKRDIVVVITNQVYSDIKS---NSLKPIGGSSLE 182

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
             S   + + + G+        G++ R K+ K++        EF I
Sbjct: 183 HISKTIIQLEKTGT--------GSR-RAKIWKHRSRPEGTTCEFTI 219


>gi|225874745|ref|YP_002756204.1| hypothetical protein ACP_3199 [Acidobacterium capsulatum ATCC
           51196]
 gi|225792338|gb|ACO32428.1| hypothetical protein ACP_3199 [Acidobacterium capsulatum ATCC
           51196]
          Length = 345

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 9/148 (6%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
            ++ +G   +D  L  GG P G + E+ GPE+SG+T LAL  +     TG  CA++D   
Sbjct: 32  PMIPTGVAEMDAML-DGGLPVGAMTEMAGPETSGRTALALSFLRSLTDTGRACAWIDVSD 90

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV--------AAL 157
             D   A  +GVDL  +L  +    + A++ +  L  S     ++  S            
Sbjct: 91  TFDPESAAAVGVDLARVLWVRCGVPKAAMKPSRELQFSLPEKYLIAASTKKGVHGGGCGG 150

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRK 185
            PR E++G  G     ++    +    +
Sbjct: 151 HPRKEVKGLAGAVHELLRPETFAPRCAE 178


>gi|326427154|gb|EGD72724.1| DMC1 protein [Salpingoeca sp. ATCC 50818]
          Length = 340

 Score = 77.2 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 83/221 (37%), Gaps = 28/221 (12%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------- 92
              + +  +S+G+  LD  LG GG    +I EI+G   +GK+ + +     +Q       
Sbjct: 93  EARQQVFFISTGAKELDAILG-GGIESQQITEIHGEYRTGKSQICMTLCISAQVPTDETN 151

Query: 93  KTGGTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQALEI-----TDM 139
            +GG   ++D E A        +           L N+   +    EQ   +       +
Sbjct: 152 YSGGKVIYIDTEGAFRPERLEGICDRFNVDYQAALNNVYFCRAYNSEQLATLMADVGAIL 211

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
              +G V +++IDS+ A   R +  G         + ++++Q L  +          +V 
Sbjct: 212 AQEAGIVRLLIIDSIMATF-RTDYCGRGE---LAERQQMLNQVLAAIKRLAEEWNLAVVL 267

Query: 200 INQMRMKIGVMF---GSPETTTGGNALKFYSSVRLDIRRVG 237
            NQM    G        P+   GG+ L      RL +R+  
Sbjct: 268 TNQMCSDPGATMSFVSDPKKPVGGHILAHAVQTRLSLRKGS 308


>gi|58259207|ref|XP_567016.1| recombinase [Cryptococcus neoformans var. neoformans JEC21]
 gi|134107347|ref|XP_777558.1| hypothetical protein CNBA6800 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50260252|gb|EAL22911.1| hypothetical protein CNBA6800 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223153|gb|AAW41197.1| recombinase, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 365

 Score = 77.2 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 90/260 (34%), Gaps = 42/260 (16%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPE-----------------SSGKTTLALHTIAQ 90
           +++GS GLD  LG GG   G I E+YG                    +GK+ L       
Sbjct: 108 ITTGSTGLDTILG-GGIETGAITELYGKSLRSLVASPIANTSTGEFRTGKSQLCHTLAVT 166

Query: 91  SQKT------GGTCAFVDAEHALDSIYA----RKLGVD----LKNLLISQPDTGEQALEI 136
            Q         G C ++D E     +       + G+D    L N+  ++    +  L++
Sbjct: 167 CQLPVSMGGGEGKCLYIDTEGTFRPVRMLAVAERYGLDGEEVLDNIAYARAYNADHQLQL 226

Query: 137 ---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
                 ++      ++++DS  +L  R +  G    S   M      + L +L      +
Sbjct: 227 LVQASAMMAESRFSLLIVDSCTSLY-RTDFSGRGELSARQMHLAKFLRTLMRLADEFGVA 285

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITG 247
             +   +              +   GGN +   S+ RL++R      RV  I D   +  
Sbjct: 286 VVVTNQVVAQVDGGQFAVADAKKPIGGNIMAHASTTRLNLRKGRGTSRVCKIVDSPCLPE 345

Query: 248 NQTRVKVVKNKMASPFKQVE 267
            +    +  N +  P +  E
Sbjct: 346 AEAIFAINPNGIGDPEELQE 365


>gi|110742988|dbj|BAE99388.1| RAD51 homolog [Arabidopsis thaliana]
          Length = 342

 Score = 77.2 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 89/249 (35%), Gaps = 35/249 (14%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
            + I  ++SGS  LD  L  GG   G I E+YG   SGKT L        Q         
Sbjct: 99  RQEIIQITSGSRELDKVL-EGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPMDQGGGE 157

Query: 96  GTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSG 144
           G   ++ AE         ++           L+N+  ++    +    +      ++   
Sbjct: 158 GKAMYIGAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMIET 217

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++++DS  AL  R +  G    S   M    +++ LR L          +V  NQ+ 
Sbjct: 218 RFALLIVDSATALY-RTDFSGRGELSARQMH---LAKFLRSLQKLADEFGVAVVITNQVV 273

Query: 205 MKIGV---MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
            ++       G      GGN +   ++ RL +R+  +          + R+  V +    
Sbjct: 274 AQVDGSALFAGPQFKPIGGNIMAHATTTRLALRKGRA----------EERICKVISSPCL 323

Query: 262 PFKQVEFDI 270
           P  +  F I
Sbjct: 324 PEAEARFQI 332


>gi|109157830|pdb|2GDJ|A Chain A, Delta-62 Rada Recombinase In Complex With Amp-Pnp And
           Magnesium
          Length = 264

 Score = 77.2 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 92/269 (34%), Gaps = 42/269 (15%)

Query: 30  GAIMQLGSQGSIFEGIEVV---SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           G+ M   S   + +    V   S+ S  LD  LG GG     + E  G   SGKT +   
Sbjct: 1   GSHMGFKSGIDLLKQRSTVWKLSTSSSELDSVLG-GGLESQSVTEFAGVFGSGKTQIMHQ 59

Query: 87  TIAQSQKTG----------------GTCAFVDAEHALDSIYARKLGVD--------LKNL 122
           +    Q                       ++D E         ++           L N 
Sbjct: 60  SCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNT 119

Query: 123 LISQPDTGEQAL----EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
            +++    +  +    +I D++     + ++VIDS+ +   R E  G         + + 
Sbjct: 120 FVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTF-RNEYTGR---GKLAERQQK 175

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR---- 234
           + + +  L        C+++  NQ+  K    FG  E   GG+ +   ++ R  +R    
Sbjct: 176 LGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVRKGKG 235

Query: 235 --RVGSIKDKDSITGNQTRVKVVKNKMAS 261
             RV  + D   +   +   ++ +  +  
Sbjct: 236 DKRVAKLYDSPHLPDAEAIFRITEKGIQD 264


>gi|41615212|ref|NP_963710.1| DNA repair and recombination protein RadA [Nanoarchaeum equitans
           Kin4-M]
 gi|73913726|sp|Q74MX9|RADA_NANEQ RecName: Full=DNA repair and recombination protein radA
 gi|40068936|gb|AAR39271.1| NEQ426 [Nanoarchaeum equitans Kin4-M]
          Length = 325

 Score = 77.2 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 81/250 (32%), Gaps = 31/250 (12%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
              +    +++ S  LD  LG GG     + E YG   SGKT +        Q       
Sbjct: 81  EERQKTARITTMSKNLDSLLG-GGIETAALTEFYGEYGSGKTQVGHQLAVDVQLPPEQGG 139

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLK--------NLLISQPDTGEQALEITDMLV---- 141
             G   ++D E        +++   L         N+   +    +  +           
Sbjct: 140 LEGKAVYIDTEGTFRPERIKQMAEALDLDPKKALKNVYHMKVFNTDHQMLAARKAEELIR 199

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           +   + +IV+DS+ AL  RAE  G         +   + + +  L          +   N
Sbjct: 200 KGEPIKLIVVDSLTALF-RAEYTGR---GQLAERQHKLGRHVHDLLRIAELYNVAIYVTN 255

Query: 202 QMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVK 253
           Q+  K              GG+ L   S+ R+ +R      R+  + D   +   +T   
Sbjct: 256 QVMAKPDSFIPGLDSVQAVGGHVLAHASTYRVFLRKGKKGIRIARLVDSPHLPERETTFV 315

Query: 254 VVKNKMASPF 263
           + +  +  P 
Sbjct: 316 ITEEGIRDPE 325


>gi|87248013|gb|ABD36059.1| RecA [Borrelia lusitaniae]
          Length = 59

 Score = 77.2 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/59 (69%), Positives = 50/59 (84%)

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
           ALGIGG+P+GRI+E++GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+ LG
Sbjct: 1   ALGIGGYPRGRIIEVFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALG 59


>gi|322708659|gb|EFZ00236.1| DNA repair protein RAD51 [Metarhizium anisopliae ARSEF 23]
          Length = 1532

 Score = 77.2 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 84/251 (33%), Gaps = 46/251 (18%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  L  GG   G + E++G   +GK+ +        Q         G C +
Sbjct: 102 SITTGSKNLDTLLA-GGIETGSVTELFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLY 160

Query: 101 VDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           +D E     +    +           L N+  ++    +  L++ +              
Sbjct: 161 IDTEGTFRPVRLLAVANRFGLSGEEVLDNVAYARAYNSDHQLQLLNQAAAMMYFC----- 215

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG---- 208
                          G      +   +++ +R L          +V  NQ+  ++     
Sbjct: 216 ---------------GRGELSNRQTHLAKFMRTLQRLADEFGIAVVITNQVVAQVDGGPS 260

Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
            +    P+   GGN +   S+ R+ ++      R+  I D   +  + T   + ++ +  
Sbjct: 261 SMFNPDPKKPIGGNIIAHASTTRISLKKGRGETRIAKIYDSPCLPESDTLFAINEDDIRD 320

Query: 262 PFKQVEFDIMY 272
            F +  +  +Y
Sbjct: 321 DFSKCSYSQLY 331


>gi|253741848|gb|EES98708.1| Dmc1b [Giardia intestinalis ATCC 50581]
          Length = 368

 Score = 77.2 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 99/287 (34%), Gaps = 36/287 (12%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           + + K ++     K L  A       +  G+             ++ +S+G    +  LG
Sbjct: 89  LGHVKGISEAKVEKILSVANEMCGNTFITGS-----EALKKRAQVKRLSTGCTDFNTLLG 143

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARK 114
            GG     I E++G   +GKT L       +Q        GG   ++D E          
Sbjct: 144 -GGVETMSITEVFGEFRTGKTQLCHTLAVTAQLPVSKGGGGGKTVYIDTEGTFRPEKVAP 202

Query: 115 LGVD--------LKNLLISQPDTGEQALE---ITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           +           L N+++++  T EQ +E       L+      +++IDS+ AL      
Sbjct: 203 IAERFGLNPKKALDNIIVARVYTHEQQIECITALPKLMIESQFALVIIDSITALFR---- 258

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG---VMFGSPETTTGG 220
               G      + + + Q L  L          +   NQ+  ++    +    P+   GG
Sbjct: 259 VDFTGRGELADRQQKLGQHLAGLAKLADEFNLAIFVTNQVMAQVDGAAMFTADPKKPIGG 318

Query: 221 NALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
           + L   S+ RL +R      RV  I D  S+   +    +    +  
Sbjct: 319 HILAHASTTRLYLRKGRGDTRVAKIYDSPSLAEGEASYSIAAEGIID 365


>gi|289579772|ref|YP_003478238.1| DNA repair and recombination protein RadB [Natrialba magadii ATCC
           43099]
 gi|289529325|gb|ADD03676.1| DNA repair and recombination protein RadB [Natrialba magadii ATCC
           43099]
          Length = 275

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 56/270 (20%), Positives = 97/270 (35%), Gaps = 65/270 (24%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            + +G   +D  LG GGF +G + ++YGP ++GKT LAL    ++   GGT  ++D E  
Sbjct: 5   ALPTGCGPVDELLG-GGFERGTVTQLYGPPAAGKTNLALSAAVETAVEGGTVVYIDTEGV 63

Query: 107 LDSIYARKLGVDLKN--------------------------------------------- 121
               + + L   + N                                             
Sbjct: 64  SVDRFDQLLTARVGNTGAGTDTATDSDTPVARDGGPGPGPGTLESDLDSSDTDPTPDVET 123

Query: 122 -----LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
                ++    D  EQA  + D    +   D+IV+DS      R E  G+  +   G   
Sbjct: 124 VASRIVIEDALDFEEQAEAVRDAEEFAERADLIVLDSATGFY-RLERTGEGND---GEAL 179

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV--RLDIR 234
           R +++ +  L S   +    +V  NQ+               GGN L+ ++ V  RLD  
Sbjct: 180 RSVTRQVTHLLSLARKYDLAVVLTNQVFSDPES---DRTRALGGNTLEHWTGVVLRLDRF 236

Query: 235 RVGS-----IKDKDSITGNQTRVKVVKNKM 259
           R G       K +    G  ++ ++  + +
Sbjct: 237 RGGKRRATLEKHRSKPVGESSQFRITDSGV 266


>gi|134045413|ref|YP_001096899.1| DNA repair and recombination protein RadA [Methanococcus
           maripaludis C5]
 gi|166218761|sp|A4FWV5|RADA_METM5 RecName: Full=DNA repair and recombination protein radA
 gi|132663038|gb|ABO34684.1| DNA repair and recombination protein RadA [Methanococcus
           maripaludis C5]
          Length = 322

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 89/256 (34%), Gaps = 39/256 (15%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT-- 97
              + +  +S+GS  LD  L  GG     + E  G   SGKT +   T    Q       
Sbjct: 72  KQRQSVWRLSTGSKELDTVLA-GGLESQSVTEFAGMYGSGKTQIMHQTCVNLQMAEKIFA 130

Query: 98  --------------CAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQAL- 134
                           ++D E         ++           L N  +++    +  + 
Sbjct: 131 DLEGVVEEEMENPKAVYIDTEGTFRPERVVQMAEGAGIDGQTVLDNTFVARAYNSDMQML 190

Query: 135 ---EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
              +I D++     + +++IDS+ +   R E  G         + + + + +  L     
Sbjct: 191 FAEKIEDLIKGGNNIKLVIIDSLTSTF-RNEFTGR---GKLAERQQKLGRHMATLNKLAD 246

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
              CI++  NQ+  K    FG  E   GG+ +   ++ R  +R      RV  + D   +
Sbjct: 247 LYNCIVLVTNQVAAKPDAFFGVAEQAIGGHVVGHAATFRFFLRKSKGDKRVAKLYDSPHL 306

Query: 246 TGNQTRVKVVKNKMAS 261
             ++   ++ +  +  
Sbjct: 307 PDSEAVFRITEKGIQD 322


>gi|312094833|ref|XP_003148159.1| meiotic recombination protein DMC1/LIM15 [Loa loa]
 gi|307756676|gb|EFO15910.1| meiotic recombination protein DMC1/LIM15 [Loa loa]
          Length = 347

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 93/282 (32%), Gaps = 72/282 (25%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL-----------------ALHTIA 89
            +S+GS  LD  LG GG     I E++G   +GKT L                 AL  + 
Sbjct: 68  RISTGSRELDKLLG-GGIESQAITEVFGEFRTGKTQLSHTLCVALSEKYSLGRTALEVLC 126

Query: 90  QSQ----------------------------KTGGTCAFVDAEHALDSIYARKLGVD--- 118
           + +                              GG   ++D E+       R++      
Sbjct: 127 RKEVFMFLDSKKTGGKFIFLVMCQIASETSNFKGGKVIYIDTENTFRPDRLRQINERFKM 186

Query: 119 -----LKNLLISQPDTGEQALEITDMLVRSGA-----VDIIVIDSVAALTPRAEIEGDMG 168
                L N+L ++  T +  +E+ D +            ++V+DS+ AL          G
Sbjct: 187 DQEAMLDNILYARAYTSDHQMELLDFVAAKFHEELGVFKLLVVDSIMALFR----VDYSG 242

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG---VMFGSPETTTGGNALKF 225
                 + + ++Q L +L          +   NQM    G        P+   GG+ L  
Sbjct: 243 RGELAERQQRLAQMLSRLQKIAEEYNVAVFITNQMTADPGAGITFQADPKKPVGGHILAH 302

Query: 226 YSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
            S+ R+ ++      R+  I D   +  N+    +    +  
Sbjct: 303 ASTTRIMLKKGRGETRIAKIYDSPDLPENEATFAIATIGVTD 344


>gi|288869574|ref|ZP_05975040.2| DNA repair and recombination protein RadB [Methanobrevibacter
           smithii DSM 2374]
 gi|288861581|gb|EFC93879.1| DNA repair and recombination protein RadB [Methanobrevibacter
           smithii DSM 2374]
          Length = 234

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 93/238 (39%), Gaps = 27/238 (11%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99
           + FE    + + S G+D  L  GG  KG + +I+GP  SGK+ ++L       K G    
Sbjct: 5   ANFEDNHKIPTNS-GIDNLL-DGGVEKGTVTQIFGPPGSGKSNISLVLAVNVAKQGKKVV 62

Query: 100 FVDAEHALDSIYARKLGVD-----LKNLLISQPDTGEQALEITDMLV-----RSGAVDII 149
           +VD E  +     +++  +     + N+++ +P +  +  E    +          VD+ 
Sbjct: 63  YVDTEGGISINRIKQIAGEDFPKIVNNIIVFEPTSFLEQNENLKTIELWIRKHHDDVDLC 122

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DS  AL         + +       + + + +  L          +V  NQ+      
Sbjct: 123 VLDSAVALY-------RVDDMKSSRLNKELGKQMGILAKIARNYDVAVVLTNQIYSSFDD 175

Query: 210 MFGSPETTTGGNALKFYSSVRLDI-------RRVGSIK-DKDSITGNQTRVKVVKNKM 259
                    GG  L+++S   + +       +RV ++K  +    G Q   K+V+  +
Sbjct: 176 DNKDVVKAVGGTILQYWSKTIIQLERNDEFNKRVATLKRHRSMGEGKQVTFKIVERGI 233


>gi|312260891|emb|CBH51617.1| recombinase A [Marichromatium sp. JA121]
          Length = 117

 Score = 76.8 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 69/88 (78%), Positives = 82/88 (93%)

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           VDAEHALD +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAALTP+
Sbjct: 1   VDAEHALDPVYAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAALTPK 60

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTS 188
           AEIEG+MG+S  G+QARLMSQALRKLT 
Sbjct: 61  AEIEGEMGDSHVGLQARLMSQALRKLTR 88


>gi|303284847|ref|XP_003061714.1| DMC1 DNA recombinase [Micromonas pusilla CCMP1545]
 gi|226457044|gb|EEH54344.1| DMC1 DNA recombinase [Micromonas pusilla CCMP1545]
          Length = 371

 Score = 76.8 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 107/292 (36%), Gaps = 42/292 (14%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSI---FEGIEVVSSGSLGLDIALGI 61
           K M+     K +EAA     ++ G GA     +   +    +    ++SG+  +D  L  
Sbjct: 92  KGMSDAKVDKMIEAA----GKLLGPGAAGGFQTAKELQLSRKDNVNITSGAETIDNVL-K 146

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGGTC---AFVDAEHALDSIYARKL 115
           GGFP   + EIYG   +GKT +       +Q     GG C   A++D E         K+
Sbjct: 147 GGFPTRCLTEIYGEWRTGKTQICHTLAVTTQLPLNEGGGCAKVAWIDTEGTFRPDRIEKI 206

Query: 116 GVD--------LKNLLISQPDTGEQ---ALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
                      L N+L+++  T E     L             +++IDS+ A        
Sbjct: 207 AERFNLDAEAVLDNILVAKTFTHEMMTNCLVALAARFSEEPFKLLIIDSIMAHFR----V 262

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM---FGSPETTTGGN 221
              G      + + + Q   KL          +V+ NQ++     M      P+   GG+
Sbjct: 263 DFTGRGELSERQQKLGQFCSKLQKIADEFNIAVVYTNQVQADPSGMSFAGMDPKKAIGGH 322

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
            L   S++RL +R+           G+   +KVV           EF I  G
Sbjct: 323 VLAHASTIRLSVRKGR---------GDNRILKVVDAPNLKE-ADAEFTITDG 364


>gi|166714619|gb|ABY88037.1| RecA [Stenotrophomonas sp. ICB209]
          Length = 81

 Score = 76.8 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 58/81 (71%), Positives = 68/81 (83%), Gaps = 2/81 (2%)

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           RKLT +I RS  ++VFINQ+RMKIGVM    SPETTTGGNALKFY+SVRLDIRR+G+IK 
Sbjct: 1   RKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKK 60

Query: 242 KDSITGNQTRVKVVKNKMASP 262
            D I GNQT++KVVKNK+A P
Sbjct: 61  GDEIIGNQTKIKVVKNKLAPP 81


>gi|19115078|ref|NP_594166.1| RecA family ATPase Dmc1 [Schizosaccharomyces pombe 972h-]
 gi|12644064|sp|O42634|DMC1_SCHPO RecName: Full=Meiotic recombination protein dmc1
 gi|2887332|emb|CAA17024.1| RecA family ATPase Dmc1 [Schizosaccharomyces pombe]
 gi|3176384|dbj|BAA28671.1| dmc1 [Schizosaccharomyces pombe]
          Length = 332

 Score = 76.8 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 91/250 (36%), Gaps = 32/250 (12%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------ 92
               + +  +S+GS  L+  LG GG     I E++G    GKT ++      +Q      
Sbjct: 86  SQNRKKVWSISTGSEALNGILG-GGIQSMSITEVFGEFRCGKTQMSHTLCVTAQLPRDMG 144

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDM----L 140
              G  AF+D E        + +           ++N+++S+    EQ +E         
Sbjct: 145 GAEGKVAFIDTEGTFRPDRIKAIAERFGVDADQAMENIIVSRAYNSEQQMEYITKLGTIF 204

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
              G   ++++DS+ AL  R +  G    S    +  +M   L +L          +   
Sbjct: 205 AEDGQYRLLIVDSIMALF-RVDYSGRGELSERQQKLNIM---LARLNHISEEFNVAVFVT 260

Query: 201 NQMRMKIGVMFG---SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTR 251
           NQ++   G       +     GG+ +   S+ RL +R      RV  + D   +   +  
Sbjct: 261 NQVQADPGAAMMFASNDRKPVGGHVMAHASATRLLLRKGRGEERVAKLNDSPDMPEAECS 320

Query: 252 VKVVKNKMAS 261
             +    +A 
Sbjct: 321 YVITPGGIAD 330


>gi|145352283|ref|XP_001420481.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580715|gb|ABO98774.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 358

 Score = 76.8 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 95/251 (37%), Gaps = 31/251 (12%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-- 93
                  + +  ++SG+  +D  LG GGF    I EIYG    GKT L       +Q   
Sbjct: 110 AEDAERRKDVVHITSGAAAVDAILG-GGFESRAITEIYGEWRCGKTQLCHTIAVTTQMPV 168

Query: 94  -TGGTC---AFVDAEHALD----SIYARKLGVDLKNLLIS-------QPDTGEQALEITD 138
             GG C   A++D E+          A + G+D   +L +         D    AL    
Sbjct: 169 EMGGGCAKVAWIDTENTFRGDRLVQIANRFGLDADAVLSNVMVARVDTVDQMMHALIAIG 228

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
             +      ++V+DS+ A+         +       + + ++Q L +L          +V
Sbjct: 229 AKMAEEPFKLLVVDSIMAIFR----VDYVARGELSERQQTLNQFLSRLRKIAEEFNVAVV 284

Query: 199 FINQMRMKIGVM---FGSPETTTGGNALKFYSSVRLDIRRVG------SIKDKDSITGNQ 249
             NQ++   G M      P+   GG+ L   S++RL +R+         +    ++  ++
Sbjct: 285 LTNQVQSDPGGMAFAGVEPKKAIGGHVLAHASTIRLMVRKGRAEARVLKVLQGPTLKEDE 344

Query: 250 TRVKVVKNKMA 260
              ++ +  + 
Sbjct: 345 AEFQITEGGVT 355


>gi|297619372|ref|YP_003707477.1| DNA repair and recombination protein RadA [Methanococcus voltae A3]
 gi|297378349|gb|ADI36504.1| DNA repair and recombination protein RadA [Methanococcus voltae A3]
          Length = 322

 Score = 76.8 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 88/248 (35%), Gaps = 39/248 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT---------- 97
           +S+ S  LD  LG GG     + E  G   SGKT +   +    Q+              
Sbjct: 80  LSTNSGELDNVLG-GGLESQSVTEFAGVFGSGKTQIMHQSCVNLQRPDCIFFDESAVSDE 138

Query: 98  ------CAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQAL----EITDM 139
                   ++D E         ++           L N  +++    +  +    +I D+
Sbjct: 139 ELAAPKAVYIDTEGTFRPERIMQMAEHAGIEGQTILDNTFVARAYNSDMQMLFAEKIEDL 198

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           +     + ++VIDS+ +   R E  G         + + + + +  L        C+++ 
Sbjct: 199 INDGNNIKLVVIDSLTSTF-RNEYTGR---GKLAERQQKLGRHMATLNKLADLFNCVVLV 254

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVK 253
            NQ+  K    FG  E   GG+ +   ++ R  +R      RV  + D   +  ++   +
Sbjct: 255 TNQVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVRKGKGDKRVAKLYDSPHLPDSEAIFR 314

Query: 254 VVKNKMAS 261
           + +  +  
Sbjct: 315 ITEKGIQD 322


>gi|213405411|ref|XP_002173477.1| RecA family ATPase Dmc1 [Schizosaccharomyces japonicus yFS275]
 gi|212001524|gb|EEB07184.1| RecA family ATPase Dmc1 [Schizosaccharomyces japonicus yFS275]
          Length = 332

 Score = 76.4 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 92/250 (36%), Gaps = 32/250 (12%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------ 92
               + +  +S+GS   D  LG GG     I E++G    GKT ++      +Q      
Sbjct: 86  SQSRKRVWSISTGSKAFDAMLG-GGVQSMSITEVFGEFRCGKTQMSHTLCVTAQLPREMG 144

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALE----ITDML 140
              G  AF+D E        R +           ++N+++S+    EQ ++    +  + 
Sbjct: 145 GAEGKVAFIDTEGTFRPDRIRAIAERFGVDADQAMENIIVSRAYNSEQQMDYITKLATIF 204

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
              G   ++++DS+ AL  R +  G    S    +  +M   L +L          +   
Sbjct: 205 AEDGRYRLLIVDSIMALF-RVDFSGRGELSERQQKLNIM---LARLNHISEEFNVAVFVT 260

Query: 201 NQMRMKIGVMFG---SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTR 251
           NQ++   G       +     GG+ +   S+ R+ +R      RV  + D   +   +  
Sbjct: 261 NQVQADPGAALMFASNDRKPVGGHVMAHASATRILLRKGRGEERVAKLNDSPDMPEAECS 320

Query: 252 VKVVKNKMAS 261
             +    +A 
Sbjct: 321 YVITSGGIAD 330


>gi|226228137|ref|YP_002762243.1| RecA protein homolog [Gemmatimonas aurantiaca T-27]
 gi|226091328|dbj|BAH39773.1| RecA protein homolog [Gemmatimonas aurantiaca T-27]
          Length = 353

 Score = 76.4 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 4/109 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +G   LD ALG GG P+GRI E+ GP + GK+ L    I Q   TG   A++DA   L 
Sbjct: 28  PTGVPALDRALG-GGIPRGRITELVGPLAVGKSGLLRQVITQVLATGSWAAWIDATRTLA 86

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
                 +G  L  + +  P    +A    D+L+RSG   ++VID   +L
Sbjct: 87  PEPWTGMGARLVVVRLPTP---HRAAWTADLLLRSGVFGLVVIDGAPSL 132


>gi|124486092|ref|YP_001030708.1| hypothetical protein Mlab_1272 [Methanocorpusculum labreanum Z]
 gi|124363633|gb|ABN07441.1| DNA repair and recombination protein RadB [Methanocorpusculum
           labreanum Z]
          Length = 224

 Score = 76.4 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 18/204 (8%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + + ++ +S+G+ GLD  LG GG     I + +G   SGK+TL +       + G    +
Sbjct: 1   MEDAVKKISTGASGLDTLLG-GGIEPRMITQFFGEAGSGKSTLCMTAAVSVLRKGLGVVY 59

Query: 101 VDAEHALDSIYARKLGVDLKNL-----LISQPDTGEQALEI--TDMLVRSGAVDIIVIDS 153
           +D+E      +++  G   +       +       EQ L I  ++ L++SG   +IV+DS
Sbjct: 60  IDSEGFSIERFSQIAGASTEECAKHLYVFEPATFAEQGLMISESEQLIKSGTAGLIVLDS 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
             AL  R E               ++S+ +  L     R    ++  NQ+ M I     S
Sbjct: 120 ATALY-RVEQMDT------KDALSMLSRQMMVLLGIAKRYDIPVLITNQVFMDIDHHRLS 172

Query: 214 PETTTGGNALKFYSSVRLDIRRVG 237
                GG AL   S   + + +  
Sbjct: 173 G---LGGTALSHISKAIIRVEKHE 193


>gi|299756148|ref|XP_001829128.2| Rad51 [Coprinopsis cinerea okayama7#130]
 gi|298411544|gb|EAU92763.2| Rad51 [Coprinopsis cinerea okayama7#130]
          Length = 364

 Score = 76.4 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 62/299 (20%), Positives = 103/299 (34%), Gaps = 55/299 (18%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K M+     K  EAA       +  G            + + V+S+GS  +D  LG GG 
Sbjct: 72  KGMSEAKVEKIKEAAQKIHGSSFATG-----VEIQDKRKRVLVISTGSKLVDGILG-GGV 125

Query: 65  PKGRIVE-----------------IYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
               I E                 +YG   +GKT LA      +Q         G  A++
Sbjct: 126 MSQSITEGSSYPSHYLCSASDLAPVYGEYRTGKTQLAHTMSVVAQLPPEYGGAAGKVAYI 185

Query: 102 DAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGAVD----II 149
           D E        R +           L+N+L ++    E  +E+ +      A D    ++
Sbjct: 186 DTEGTFRPDRIRAIADRFGVDGTMALENILYARAFNSEHQMELINECSARFAEDKDFRLL 245

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           +IDS+ AL          G      + + ++Q L KLT         ++  NQ++   G 
Sbjct: 246 IIDSIMALFR----VDYSGRGELSERQQKLAQMLSKLTKLSEEFNIAVLMTNQVQSDPGA 301

Query: 210 MFGS----PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258
                        GG+ L   S+ R+ +R      RV  + D      ++   K+ +  
Sbjct: 302 TMTFVAGGALKPIGGHILSHASATRIFLRKGRAEERVAKLVDSPDRPESEASYKLDEGG 360


>gi|2696694|dbj|BAA23984.1| SpDmc1 [Schizosaccharomyces pombe]
          Length = 336

 Score = 76.4 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 91/250 (36%), Gaps = 32/250 (12%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------ 92
               + +  +S+GS  L+  LG GG     I E++G    GKT ++      +Q      
Sbjct: 90  SQNRKKVWSISTGSEALNGILG-GGIQSMSITEVFGEFRCGKTQMSHTLCVTAQLPRDMG 148

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDM----L 140
              G  AF+D E        + +           ++N+++S+    EQ +E         
Sbjct: 149 GAEGKVAFIDTEGTFRPDRIKAIAERFGVDADQAMENIIVSRAYNSEQQMEYITKLGTIF 208

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
              G   ++++DS+ AL  R +  G    S    +  +M   L +L          +   
Sbjct: 209 AEDGQYRLLIVDSIMALF-RVDYSGRGELSERQKKLNIM---LARLNHISEEFNVAVFVT 264

Query: 201 NQMRMKIGVMFG---SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTR 251
           NQ++   G       +     GG+ +   S+ RL +R      RV  + D   +   +  
Sbjct: 265 NQVQADPGAAMMFASNDRKPVGGHVMAHASATRLLLRKGRGEERVAKLNDSPDMPEAECS 324

Query: 252 VKVVKNKMAS 261
             +    +A 
Sbjct: 325 YVITPGGIAD 334


>gi|322493132|emb|CBZ28417.1| putative RAD51 protein [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 375

 Score = 76.0 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 93/257 (36%), Gaps = 29/257 (11%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
              + I +V++GS  +D  LG GG   G I E++G   +GKT L        Q       
Sbjct: 129 EARKEIIMVTTGSREVDKLLG-GGIETGSITELFGEFRTGKTQLCHTLCVTCQLPISQGG 187

Query: 94  TGGTCAFVDAEHALDSIY----ARKLGVDLKNLLISQP-------DTGEQALEITDMLVR 142
             G   ++D E           A +  +D +++L +         D  +Q L     ++ 
Sbjct: 188 AEGMALYIDTEGTFRPERLVAVAERYKLDPEDVLANVACARAFNTDHQQQLLMQASAMMA 247

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                +I++DS  AL  R +  G    +   M      ++L  L      +  +   +  
Sbjct: 248 ENRFALIIVDSATALY-RTDYSGRNELAARQMHLGKFLRSLHNLAEEYGVAVVVTNQVVA 306

Query: 203 MRMKIGVMFGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
                  MF +  +   GG+ +   S+ RL +R+           G Q  +KV  +   +
Sbjct: 307 NVDGSAQMFQADAKKPIGGHIMAHASTTRLSLRKGR---------GEQRIIKVYDSPCLA 357

Query: 262 PFKQVEFDIMYGEGISF 278
             + V      G G + 
Sbjct: 358 EAEAVFGIYEDGVGDAR 374


>gi|116626079|ref|YP_828235.1| RecA domain-containing protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229241|gb|ABJ87950.1| RecA domain protein [Candidatus Solibacter usitatus Ellin6076]
          Length = 224

 Score = 76.0 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 52/213 (24%), Positives = 91/213 (42%), Gaps = 22/213 (10%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           +++ +   +++            E+V +G   +D A   GG P+G + EI GP SSG+T+
Sbjct: 6   LKKQF--ESVLGGAQDWQSRPEPELVPTGVADVDSA--TGGLPRGCLTEIVGPASSGRTS 61

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS-QPDTGEQALEITDMLV 141
           L L  +A +     TCA VDAE A     A   GV L  LL      + E AL+  D+L+
Sbjct: 62  LLLSILAAATARQETCALVDAEDAFAPHSAADAGVQLSRLLWVRCGHSAEHALKAADLLI 121

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           + G   ++V+D              +G++ P    R+   +  +L  ++  +  +L+ I 
Sbjct: 122 QGGGFGLVVMD--------------LGDTAPATARRISLTSWFRLRRAVEHTPTVLLSI- 166

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
               +      +      G   + +S  R   R
Sbjct: 167 --ARQANAKTCASLVIECGRRQERWSGTRHVSR 197


>gi|325092525|gb|EGC45835.1| meiotic recombination protein dmc1 [Ajellomyces capsulatus H88]
          Length = 381

 Score = 76.0 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 55/281 (19%), Positives = 96/281 (34%), Gaps = 57/281 (20%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG Q    + +  +S+GS   D  L  GGF    I E+YG    GKT L+      +Q
Sbjct: 108 MELGHQ---RKRVVKISTGSKQFDSILA-GGFQSMSISEVYGEFRCGKTQLSHTMSVMAQ 163

Query: 93  ------KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITD 138
                    G  A++D E         ++           L+N+  ++    E  LE+ +
Sbjct: 164 LPKDMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELLN 223

Query: 139 MLVRSG---AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
            L +        +++IDS+     R +  G         + + ++Q L KL         
Sbjct: 224 TLSKEFVGGEYRLLIIDSIMNCF-RVDYCGRGE---LADRQQKLNQFLMKLAHMAEEFNV 279

Query: 196 ILVFI----------------------NQMRMKIGVMF----GSPETTTGGNALKFYSSV 229
            ++ +                      NQ++   G              GG+ L   S+ 
Sbjct: 280 CVLMVCTSKNRESLALLGIHAYPTTQTNQVQSDPGASTLFAGADGRKPVGGHILAHASTT 339

Query: 230 RLDIR------RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           R+ +R      RV  I+D       +    +    +  P K
Sbjct: 340 RVLLRKGRGDERVAKIQDSPDCPEREAIYVITNGGINDPDK 380


>gi|86450980|gb|ABC96757.1| RecA [Pasteuria ramosa]
          Length = 93

 Score = 75.6 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 61/92 (66%), Positives = 75/92 (81%)

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
           H IA+ Q+ GG  A +DAEHALD IYAR LGV +  LL+SQPDTGEQ LEI + LVRSGA
Sbjct: 1   HAIAEVQRGGGEAAXIDAEHALDPIYARNLGVKVDTLLVSQPDTGEQGLEIAEALVRSGA 60

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           ++++VIDSVAAL P+AEIEG+MG+S  G+QAR
Sbjct: 61  IEMLVIDSVAALVPKAEIEGEMGDSHVGLQAR 92


>gi|225562590|gb|EEH10869.1| meiotic recombination protein dmc1 [Ajellomyces capsulatus G186AR]
          Length = 381

 Score = 75.6 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 55/281 (19%), Positives = 96/281 (34%), Gaps = 57/281 (20%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG Q    + +  +S+GS   D  L  GGF    I E+YG    GKT L+      +Q
Sbjct: 108 MELGHQ---RKRVVKISTGSKQFDSILA-GGFQSMSISEVYGEFRCGKTQLSHTMSVMAQ 163

Query: 93  ------KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITD 138
                    G  A++D E         ++           L+N+  ++    E  LE+ +
Sbjct: 164 LPKDMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELLN 223

Query: 139 MLVRSG---AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
            L +        +++IDS+     R +  G         + + ++Q L KL         
Sbjct: 224 TLSKEFVGGEYRLLIIDSIMNCF-RVDYCGRGE---LADRQQKLNQFLMKLAHMAEEFNV 279

Query: 196 ILVFI----------------------NQMRMKIGVM----FGSPETTTGGNALKFYSSV 229
            ++ +                      NQ++   G              GG+ L   S+ 
Sbjct: 280 CVLMVCTSKNRESLTLLGIHAYPTTQTNQVQSDPGASALFAGADGRKPVGGHILAHASTT 339

Query: 230 RLDIR------RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           R+ +R      RV  I+D       +    +    +  P K
Sbjct: 340 RVLLRKGRGDERVAKIQDSPDCPEREAIYVITNGGINDPDK 380


>gi|315023731|gb|EFT36734.1| recA protein [Riemerella anatipestifer RA-YM]
 gi|325336469|gb|ADZ12743.1| RecA2 [Riemerella anatipestifer RA-GD]
          Length = 63

 Score = 75.6 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 45/59 (76%)

Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308
            +V+++KNK+A PFKQ EFDIMYGEGIS  GE++   V+  IV KSG+WFS+K  +L Q
Sbjct: 1   MKVEIIKNKIAPPFKQAEFDIMYGEGISKTGEILVQAVELGIVKKSGSWFSYKDTKLDQ 59


>gi|240280982|gb|EER44485.1| meiotic recombination protein [Ajellomyces capsulatus H143]
          Length = 381

 Score = 75.6 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 55/281 (19%), Positives = 96/281 (34%), Gaps = 57/281 (20%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG Q    + +  +S+GS   D  L  GGF    I E+YG    GKT L+      +Q
Sbjct: 108 MELGHQ---RKRVVKISTGSKQFDSILA-GGFQSMSISEVYGEFRCGKTQLSHTMSVMAQ 163

Query: 93  ------KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITD 138
                    G  A++D E         ++           L+N+  ++    E  LE+ +
Sbjct: 164 LPKDMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELLN 223

Query: 139 MLVRSG---AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
            L +        +++IDS+     R +  G         + + ++Q L KL         
Sbjct: 224 TLSKEFVGGEYRLLIIDSIMNCF-RVDYCGRGE---LADRQQKLNQFLMKLAHMAEEFNV 279

Query: 196 ILVFI----------------------NQMRMKIGVM----FGSPETTTGGNALKFYSSV 229
            ++ +                      NQ++   G              GG+ L   S+ 
Sbjct: 280 CVLMVCTSKNRESLALLGIHAYPTTQTNQVQSDPGASALFAGADGRKPVGGHILAHASTT 339

Query: 230 RLDIR------RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           R+ +R      RV  I+D       +    +    +  P K
Sbjct: 340 RVLLRKGRGDERVAKIQDSPDCPEREAIYVITNGGINDPDK 380


>gi|8307944|gb|AAF74403.1|AF198107_3 DNA repair protein RAD51 [Giardia intestinalis]
          Length = 236

 Score = 75.6 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 88/238 (36%), Gaps = 31/238 (13%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDA 103
           SG    +  LG GG     I E++G   +GKT L       +Q        GG   ++D 
Sbjct: 1   SGCADFNALLG-GGVETMSITEVFGEFRTGKTQLCHTLAVTAQLPVSKGGGGGKTVYIDT 59

Query: 104 EHALDSI----YARKLGVD----LKNLLISQPDTGEQALE---ITDMLVRSGAVDIIVID 152
           E           A + G++    L N+++++  T EQ +E       L+      ++++D
Sbjct: 60  EGTFRPEKVAPIAERFGLNPKKALDNIMVARVYTHEQQIECITALPKLMVENQFSLVIVD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG---V 209
           S+ AL          G      + + + Q L  L          +   NQ+  ++    +
Sbjct: 120 SLTALFR----VDFTGRGELADRQQKLGQHLSGLAKLADEFNLAVFVTNQVMAQVDGAAM 175

Query: 210 MFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
               P+   GG+ L   S+ RL +R      RV  I D  S+   +    +    +  
Sbjct: 176 FTADPKKPIGGHILAHASTTRLYLRKGRGDTRVAKIYDSPSLAEGEASYSIAAEGIID 233


>gi|71028324|ref|XP_763805.1| meiotic recombination protein DMC1 [Theileria parva strain Muguga]
 gi|68350759|gb|EAN31522.1| meiotic recombination protein DMC1, putative [Theileria parva]
          Length = 346

 Score = 75.6 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 92/249 (36%), Gaps = 33/249 (13%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT-- 97
            I + I  +++GS  L+  L  GG     I E++G   +GKT +       SQ    T  
Sbjct: 103 KIRKSILKINTGSEMLNRLLN-GGIETMSITELFGENRTGKTQICHTISVTSQIINPTEP 161

Query: 98  --CAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSG 144
               ++D E+        K+           L N+L S+  T E  L++       +   
Sbjct: 162 FKVCYIDTENTFRPEKIEKICERFDLDPMITLDNILYSKAYTNEHLLQLISNITSKMVEE 221

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              +++IDS+ +L          G      + + +++ L  L     +    +V  N + 
Sbjct: 222 RFVLLIIDSIMSLFR----VDYSGRGELAERQQRLNKLLSNLLKIAQQFNVAIVLTNHVI 277

Query: 205 MKIG---VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
            +         +P    GGN +   S+ RL +R+           GNQ   K V +    
Sbjct: 278 SEPSGALSFISNPIKPAGGNVIGHASTCRLSLRKGK---------GNQRICK-VYDSPNL 327

Query: 262 PFKQVEFDI 270
           P  +  F++
Sbjct: 328 PESECIFEL 336


>gi|330508608|ref|YP_004385036.1| DNA repair and recombination protein RadA [Methanosaeta concilii
           GP-6]
 gi|328929416|gb|AEB69218.1| DNA repair and recombination protein RadA [Methanosaeta concilii
           GP-6]
          Length = 325

 Score = 75.6 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 80/229 (34%), Gaps = 32/229 (13%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
              + +  V++     D  LG GG     IVE+YG    GKT +A       Q       
Sbjct: 74  ERRKQVGKVTTSCKSFDELLG-GGMETQAIVELYGEFGCGKTQVAHQLAVNIQLPVEMGG 132

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDL---------------KNLLISQPDTGEQA----- 133
             G+   +D E+        ++   L               KN+ +++            
Sbjct: 133 LNGSVIIIDTENTFRPERIDQMVKGLPPAPDGRIWETEDFLKNINVARAFNSNHQILLAE 192

Query: 134 --LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
             +++ + +  S     ++I        RAE  G         + + +++ L  L     
Sbjct: 193 SAMDLAEKVKDSERPVRLLIVDSVTAHFRAEYVGR---GTLADRQQKLNKHLHDLMRFGD 249

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
            +  +++  NQ+  K    FG P    GG+ L   S+ RL +R+    K
Sbjct: 250 LNNALILVTNQVMSKPDTFFGDPTKPVGGHVLGHTSTFRLYLRKSKGEK 298


>gi|115385342|ref|XP_001209218.1| meiotic recombination protein DMC1 [Aspergillus terreus NIH2624]
 gi|114196910|gb|EAU38610.1| meiotic recombination protein DMC1 [Aspergillus terreus NIH2624]
          Length = 607

 Score = 75.6 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 53/271 (19%), Positives = 92/271 (33%), Gaps = 50/271 (18%)

Query: 42  FEGIEVVSSGSLGLDIALG----------------IGGFPKGRIVEIYGPESSGKTTLAL 85
            + +  +S+GS   D  LG                  GF    I E++G    GKT L+ 
Sbjct: 7   RKKVVRISTGSKQFDAILGGQVTSLSRLLHALLTAFRGFQSMSISEVFGEFRCGKTQLSH 66

Query: 86  HTIAQSQ------KTGGTCAFVDAEHALDSIYA----RKLGVDLK----NLLISQPDTGE 131
                +Q         G  A++D E             + GVD      N+  ++    E
Sbjct: 67  TMSVVAQLPKEMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSAQENIAYARALNSE 126

Query: 132 QALEITDM---LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
             LE+ +       SG   +++IDS+     R +  G         + + ++Q L KL  
Sbjct: 127 HQLELLNTLSREFASGDYRLLIIDSIMNCF-RVDYCGR---GELADRQQKLNQFLMKLAH 182

Query: 189 SISRSKCILVFINQMRMKIGVM----FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244
                   ++  NQ++   G              GG+ L   S+ R+ +R+         
Sbjct: 183 MAEEFNVCVLMTNQVQSDPGASALFAGADGRKPVGGHVLAHASTTRVLLRKGR------- 235

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275
             G++   K+  +          F I+ G G
Sbjct: 236 --GDERVAKIQDSPDIVCVGHYVFFIIVGGG 264


>gi|18976393|ref|NP_577750.1| DNA repair and recombination protein RadB [Pyrococcus furiosus DSM
           3638]
 gi|18891919|gb|AAL80145.1| recombinase [Pyrococcus furiosus DSM 3638]
          Length = 235

 Score = 75.6 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 100/244 (40%), Gaps = 29/244 (11%)

Query: 33  MQ-LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           M+ L S+G      E++++G  GLD  LG GG  KG I+++YGP ++GKTT A+     +
Sbjct: 1   MRVLKSEGVSMLNTELLTTGVKGLDELLG-GGVAKGVILQVYGPFATGKTTFAMQVGLLN 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDML--V 141
           +   G  A+VD E         ++           L+  +I +P    +  ++   L  +
Sbjct: 60  E---GKVAYVDTEGGFSPERLAQMAESRNLDVEKALEKFVIFEPMDLNEQRQVIARLKNI 116

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
            +    ++V+DS  A   RAE   + GE         +S+ L+ L     R    ++ +N
Sbjct: 117 VNEKFSLVVVDSFTAHY-RAEGSREYGE---------LSKQLQVLQWIARRKNVAVIVVN 166

Query: 202 QMRMKIGVMFGSP--ETTTGGNALKF--YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           Q+          P  E T G        +  +R+ +R     + +    G     K+   
Sbjct: 167 QVYYDSNSGILKPIAEHTLGYKTKDILRFERLRVGVRIAVLERHRFRPEGGMVYFKITDK 226

Query: 258 KMAS 261
            +  
Sbjct: 227 GLED 230


>gi|154340265|ref|XP_001566089.1| RAD51 protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063408|emb|CAM39587.1| putative RAD51 protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 374

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 93/257 (36%), Gaps = 29/257 (11%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
              + I +V++GS  +D  LG GG   G I E++G   +GKT L        Q       
Sbjct: 128 EARKEIIMVTTGSREVDKLLG-GGIETGSITELFGEFRTGKTQLCHTLCVTCQLPISQGG 186

Query: 94  TGGTCAFVDAEHALDSIY----ARKLGVDLKNLLISQP-------DTGEQALEITDMLVR 142
             G   ++D E           A +  +D +++L +         D  +Q L     ++ 
Sbjct: 187 AEGMALYIDTEGTFRPERLVAVAERYKLDPEDVLANVACARAFNTDHQQQLLLQASAMMA 246

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                +I++DS  AL  R +  G    +   M      ++L  L      +  +   +  
Sbjct: 247 ENRFALIIVDSATALY-RTDYSGRNELAARQMHLGKFLRSLHNLAEEYGVAVVVTNQVVA 305

Query: 203 MRMKIGVMFGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
                  MF +  +   GG+ +   S+ RL +R+           G Q  +KV  +   +
Sbjct: 306 NVDGSAQMFQADAKKPIGGHIMAHASTTRLSLRKGR---------GEQRIIKVYDSPCLA 356

Query: 262 PFKQVEFDIMYGEGISF 278
             + +      G G + 
Sbjct: 357 EAEAIFGIYNDGVGDAR 373


>gi|119719931|ref|YP_920426.1| Rad51-like [Thermofilum pendens Hrk 5]
 gi|119525051|gb|ABL78423.1| Rad51-like protein [Thermofilum pendens Hrk 5]
          Length = 315

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 79/207 (38%), Gaps = 20/207 (9%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCA 99
           E +++G   LD  L  GG     I E  G   SGKT L       +Q        GG   
Sbjct: 83  ESLTTGVKALDELL-EGGLVTQEIYEFAGEYGSGKTQLCHQLSVTAQLPPSRGGLGGKVV 141

Query: 100 FVDAEHALDSIYARKLGVD------LKNLLISQPDTGEQALEITDM---LVRSGAVDIIV 150
           +VD E         ++         L+ + +++P + ++  E+       +  G V ++V
Sbjct: 142 YVDTEGTFSPSRIERIAERFGVEGALEGVYVARPISVDELEELVIKGLKPLLKGGVKLVV 201

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDSV AL  RA+  G    ++   +          L         ++V  NQ+       
Sbjct: 202 IDSVIALY-RAQFRGREWLAMRQQRINYALDW---LKRLARVYSIVVVITNQVVSVPSNW 257

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVG 237
             + +   GGN +   S+ R  +++ G
Sbjct: 258 GVAVKLPAGGNIIAHASTHRFLMKKAG 284


>gi|150401406|ref|YP_001325172.1| DNA repair and recombination protein RadA [Methanococcus aeolicus
           Nankai-3]
 gi|150014109|gb|ABR56560.1| DNA repair and recombination protein RadA [Methanococcus aeolicus
           Nankai-3]
          Length = 322

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 84/251 (33%), Gaps = 37/251 (14%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------- 94
            + +  +S+GS  LD  L  GG     I E  G    GKT +A       Q         
Sbjct: 74  RKSVWRLSTGSSELDDVLA-GGLESQSITEFAGLFGCGKTQVAHQACVNLQSRENIFADE 132

Query: 95  ---------GGTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQAL--- 134
                         ++D E         ++           L N  +++    +  +   
Sbjct: 133 EHISEEEIENAKAVYIDTEGTFRPERIIQMAEAMGIDGNKVLDNTFVARAYNSDMQMLFA 192

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           E  + L++ G    +VI      T R E  G    S    + + + + +  L        
Sbjct: 193 EKVEELIKDGENIKLVIVDSLTSTFRNEYTGRGKLS---ERQQKLGRHMSVLNKLADLHN 249

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGN 248
           CI++  NQ+  K    FG  E   GGN +   ++ R  +R      RV  + D   +   
Sbjct: 250 CIVMITNQVSAKPDAFFGIQEQAIGGNIVGHAATFRFFLRKGKGDKRVAKLYDSPHLPDA 309

Query: 249 QTRVKVVKNKM 259
           +   ++ +  +
Sbjct: 310 EAIFRITEKGI 320


>gi|47226121|emb|CAG04495.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 353

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 56/308 (18%), Positives = 101/308 (32%), Gaps = 70/308 (22%)

Query: 17  EAALSQIQRVYGKGAIMQLG-----SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           EA + +I+   GK  ++ +G        +  + +  +++GS   D  LG GG     I E
Sbjct: 50  EAKVDKIKEAAGK--MLNVGFQTASEYSAKRKHVFHITTGSQEFDKLLG-GGIESMAITE 106

Query: 72  IYGPESSGKTTLALHTIA------------------------------------QSQKTG 95
            +G   +GKT L+                                             +G
Sbjct: 107 AFGEFRTGKTQLSHTLCGEDGAVEMWSSHDCLWNEVCRLVFPRCLCAVTSQLPGDDGYSG 166

Query: 96  GTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGA-- 145
           G   F+D E+       R +           L N+L ++  T E  +E+ D +       
Sbjct: 167 GKVIFIDTENTFRPDRLRDIADRFNVDQEAVLDNVLYARAYTSEHQMELLDFVAAKFHEE 226

Query: 146 ---VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                ++V+DS+ AL          G      + + ++Q L +L          +   NQ
Sbjct: 227 GGVFKLLVVDSIMALFR----VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFITNQ 282

Query: 203 MRMKI---GVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVK 253
           M             P+   GG+ L   S+ R+ +R      R+  I D   +  N+    
Sbjct: 283 MTADPGSGMTFQADPKKPIGGHILAHASTTRISLRKGRAEMRIAKIFDSPDMPENEATFS 342

Query: 254 VVKNKMAS 261
           +    +  
Sbjct: 343 ISAGGVTD 350


>gi|268323629|emb|CBH37217.1| DNA repair and recombination protein radB [uncultured archaeon]
          Length = 232

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 92/232 (39%), Gaps = 27/232 (11%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSG   +D  LG GGF    + ++YG   SGKT + L       KTG    F+D+E    
Sbjct: 8   SSGCKNIDELLG-GGFESRTVTQLYGEAGSGKTNICLQAAIGCAKTGKAVVFIDSEGFSP 66

Query: 109 SIYARKLGVDLK---------NLLISQPDTGEQA---LEITDMLVRSGAVDIIVIDSVAA 156
             + +    + +          ++I +P + EQ    ++  + +++     ++VI   A 
Sbjct: 67  ERFIQIASSNAESEDVESIARRIIIYEPQSFEQQTSSIKEIETVIKEMDDVVLVILDSAT 126

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPET 216
           L  R E++ +    L  + A      +  L     R   +++  NQ+   I         
Sbjct: 127 LFYRLELDEERSIYLRRVLANQ----IEHLQELARRHDLVVIITNQVYADIE---KGKLR 179

Query: 217 TTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
            +GG  L+  S V + +       +K +  G + R  + K++        EF
Sbjct: 180 PSGGYMLEHISKVIVQL-------EKAAEGGGKRRAILKKHRSMPEDTSCEF 224


>gi|146091679|ref|XP_001470091.1| RAD51 protein [Leishmania infantum]
 gi|134084885|emb|CAM69283.1| putative RAD51 protein [Leishmania infantum JPCM5]
 gi|322500386|emb|CBZ35463.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 376

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 92/257 (35%), Gaps = 29/257 (11%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
              + I +V++GS  +D  LG GG   G I E++G   +GKT L        Q       
Sbjct: 130 EARKEIIMVTTGSREVDKLLG-GGIETGSITELFGEFRTGKTQLCHTLCVTCQLPISQGG 188

Query: 94  TGGTCAFVDAEHALDSIY----ARKLGVDLKNLLISQP-------DTGEQALEITDMLVR 142
             G   ++D E           A +  +D +++L +         D  +Q L     ++ 
Sbjct: 189 AEGMALYIDTEGTFRPERLVAVAERYKLDPEDVLANVACARAFNTDHQQQLLLQASAMMA 248

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                +IV+DS  AL  R +  G    +   M      ++L  L      +  +   +  
Sbjct: 249 ENRFALIVVDSATALY-RTDYSGRNELAARQMHLGKFLRSLHNLAEEYGVAVVVTNQVVA 307

Query: 203 MRMKIGVMFG-SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
                  MF    +   GG+ +   S+ RL +R+           G Q  +KV  +   +
Sbjct: 308 NVDGSAQMFQADSKKPIGGHIMAHASTTRLSLRKGR---------GEQRIIKVYDSPCLA 358

Query: 262 PFKQVEFDIMYGEGISF 278
             + +      G G + 
Sbjct: 359 EAEAIFGIYDDGVGDAR 375


>gi|37625015|gb|AAQ96331.1| RAD51 protein [Leishmania donovani]
          Length = 377

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 92/257 (35%), Gaps = 29/257 (11%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
              + I +V++GS  +D  LG GG   G I E++G   +GKT L        Q       
Sbjct: 131 EARKEIIMVTTGSREVDKLLG-GGIETGSITELFGEFRTGKTQLCHTLCVTCQLPISQGG 189

Query: 94  TGGTCAFVDAEHALDSIY----ARKLGVDLKNLLISQP-------DTGEQALEITDMLVR 142
             G   ++D E           A +  +D +++L +         D  +Q L     ++ 
Sbjct: 190 AEGMALYIDTEGTFRPERLVAVAERYKLDPEDVLANVACARAFNTDHQQQLLLQASAMMA 249

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                +I++DS  AL  R +  G    +   M      ++L  L      +  +   +  
Sbjct: 250 ENRFALIIVDSATALY-RTDYSGRNELAARQMHLGKFLRSLHNLAEEYGVAVVVTNQVVA 308

Query: 203 MRMKIGVMFG-SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
                  MF    +   GG+ +   S+ RL +R+           G Q  +KV  +   +
Sbjct: 309 NVDGSAQMFQADSKKPIGGHIMAHASTTRLSLRKGR---------GEQRIIKVYDSPCLA 359

Query: 262 PFKQVEFDIMYGEGISF 278
             + +      G G + 
Sbjct: 360 EAEAIFGIYDDGVGDAR 376


>gi|157871568|ref|XP_001684333.1| RAD51 protein [Leishmania major strain Friedlin]
 gi|3132709|gb|AAC16334.1| Rad51 homolog [Leishmania major]
 gi|68127402|emb|CAJ05032.1| putative RAD51 protein [Leishmania major strain Friedlin]
          Length = 377

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 92/257 (35%), Gaps = 29/257 (11%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
              + I +V++GS  +D  LG GG   G I E++G   +GKT L        Q       
Sbjct: 131 EARKEIIMVTTGSREVDKLLG-GGIETGSITELFGEFRTGKTQLCHTLCVTCQLPISQGG 189

Query: 94  TGGTCAFVDAEHALDSIY----ARKLGVDLKNLLISQP-------DTGEQALEITDMLVR 142
             G   ++D E           A +  +D +++L +         D  +Q L     ++ 
Sbjct: 190 AEGMALYIDTEGTFRPERLVAVAERYKLDPEDVLANVACARAFNTDHQQQLLLQASAMMA 249

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                +I++DS  AL  R +  G    +   M      ++L  L      +  +   +  
Sbjct: 250 ENRFALIIVDSATALY-RTDYSGRNELAARQMHLGKFLRSLHNLAEEYGVAVVVTNQVVA 308

Query: 203 MRMKIGVMFG-SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
                  MF    +   GG+ +   S+ RL +R+           G Q  +KV  +   +
Sbjct: 309 NVDGSAQMFQADSKKPIGGHIMAHASTTRLSLRKGR---------GEQRIIKVYDSPCLA 359

Query: 262 PFKQVEFDIMYGEGISF 278
             + +      G G + 
Sbjct: 360 EAEAIFGIYDDGVGDAR 376


>gi|15027127|emb|CAC44772.1| RecA protein [Lactobacillus paracasei subsp. tolerans]
          Length = 107

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 62/104 (59%), Positives = 78/104 (75%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           +D  YA  LGV++  LL+SQPDTGEQ LEI D L  S A+DI+VIDSVAAL PRAEIEGD
Sbjct: 1   MDPKYATALGVNIDELLLSQPDTGEQGLEIADELFASVAIDIVVIDSVAALVPRAEIEGD 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           MG++  G+QARLMS ALRKL+ SI+++K I +F+ +   K G  
Sbjct: 61  MGDAHVGLQARLMSLALRKLSGSINKTKTIALFLIRFVRKSGSF 104


>gi|261334823|emb|CBH17817.1| RAD51 protein, putative [Trypanosoma brucei gambiense DAL972]
          Length = 240

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 85/238 (35%), Gaps = 26/238 (10%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           V +GS  +D  LG GG   G I E++G   +GKT          Q         G   ++
Sbjct: 2   VPTGSREVDKLLG-GGIEVGSITELFGEFRTGKTQFCHTLCVTCQLPLSQGGGEGMALYI 60

Query: 102 DAEHALDSIY----ARKLGVDLKNLLISQP-------DTGEQALEITDMLVRSGAVDIIV 150
           D E           A +  +D + +L +         D  +Q L      +    V IIV
Sbjct: 61  DTEGTFRPERLVAVAERYSLDPEAVLENVACARAYNTDHQQQLLLQASATMAEHRVAIIV 120

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DS  AL  R +  G    +   M      ++LR L +  + +  +   +          
Sbjct: 121 VDSATALY-RTDYNGRGELAARQMHLGKFLRSLRNLANEYNVAVVVTNQVVANVDGAAPT 179

Query: 211 FG-SPETTTGGNALKFYSSVRLDIRRVG------SIKDKDSITGNQTRVKVVKNKMAS 261
           F    +   GG+ +   S+ RL +R+         + D   +  ++    + +N +  
Sbjct: 180 FQADSKKPIGGHIMAHASTTRLSLRKGRGEQRIIKVYDSPCLAESEAIFGIYENGVGD 237


>gi|325118121|emb|CBZ53672.1| putative DNA repair protein [Neospora caninum Liverpool]
          Length = 353

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 87/247 (35%), Gaps = 27/247 (10%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----- 94
              E +   ++GS+ LD  L  GG   G + E++G   +GKT L        Q       
Sbjct: 105 EARENLIRFTTGSVQLDSLL-KGGIETGNLTELFGEFRTGKTQLCHTLAVTCQLPIEQAG 163

Query: 95  -GGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVR 142
             G C ++D E          +           L N+  ++    +  +E+      ++ 
Sbjct: 164 GEGKCLWIDTEGTFRPERIVSIAKRFGLNANDCLDNVAYARAYNCDHQMELLMEASAMMA 223

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                ++++DS  AL  R+E  G    +          + L+++  +   +  +   +  
Sbjct: 224 ESRFALLIVDSATALY-RSEYTGRGELASRQTHLCRFLRCLQRIADTYGVAVVVSNQVVA 282

Query: 203 MRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKV 254
               +G      + +   GGN +   S  RL +R      R+  I D  S+   +    +
Sbjct: 283 KVDNMGGGMFAGNEKLPIGGNIMAHASQTRLYLRKGRGESRICKIYDSPSLAEGEAVFAI 342

Query: 255 VKNKMAS 261
            +  +  
Sbjct: 343 GEGGIGD 349


>gi|303244732|ref|ZP_07331062.1| DNA repair and recombination protein RadA [Methanothermococcus
           okinawensis IH1]
 gi|302484866|gb|EFL47800.1| DNA repair and recombination protein RadA [Methanothermococcus
           okinawensis IH1]
          Length = 322

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 87/251 (34%), Gaps = 37/251 (14%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ--------- 92
            + +  +S+GS  L+  L  GG     I E  G   SGKT +A       Q         
Sbjct: 74  RKTVWRLSTGSDELNRILN-GGLESQSITEFAGVFGSGKTQIAHQACVNLQCEDTIFVDN 132

Query: 93  -------KTGGTCAFVDAEHALDSIYA----RKLGVD----LKNLLISQPDTGEQAL--- 134
                         ++D E              LG+D    L N  +++    +  +   
Sbjct: 133 EWVSDEELANPKAVYIDTEGTFRPERITQMAEALGIDGQKVLDNTFVARAYNSDMQMLFA 192

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           E  + L++SG    +VI      T R E  G         + + + + +  L        
Sbjct: 193 EKIEELIKSGNNIKLVIVDSLTSTFRNEYTGR---GKLAERQQKLGRHMAVLNKLADLHN 249

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGN 248
           CI+V  NQ+  +    FG  E   GG+ +   ++ R  +R      RV  + D   +   
Sbjct: 250 CIVVITNQVSARPDAFFGVAEQAIGGHIVGHAATFRFFLRKGKGDKRVAKLYDSPHLPDA 309

Query: 249 QTRVKVVKNKM 259
           +   ++ +  +
Sbjct: 310 EAIFRITEKGI 320


>gi|13878668|sp|O73948|RADA_METVO RecName: Full=DNA repair and recombination protein radA
 gi|3219351|gb|AAC23499.1| RadA [Methanococcus voltae PS]
          Length = 322

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 86/248 (34%), Gaps = 39/248 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG------------ 95
           +S+ S  LD  LG GG     + E  G   SGKT +   +    Q               
Sbjct: 80  LSTSSSELDSVLG-GGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKG 138

Query: 96  ----GTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQAL----EITDM 139
                   ++D E         ++           L N  +++    +  +    +I D+
Sbjct: 139 EVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDL 198

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           +     + ++VIDS+ +   R E  G         + + + + +  L        C+++ 
Sbjct: 199 IQEGNNIKLVVIDSLTSTF-RNEYTGR---GKLAERQQKLGRHMATLNKLADLFNCVVLV 254

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVK 253
            NQ+  K    FG  E   GG+ +   ++ R  +R      RV  + D   +   +   +
Sbjct: 255 TNQVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVRKGKGDKRVAKLYDSPHLPDAEAIFR 314

Query: 254 VVKNKMAS 261
           + +  +  
Sbjct: 315 ITEKGIQD 322


>gi|309808700|ref|ZP_07702590.1| RecA domain protein [Lactobacillus iners LactinV 01V1-a]
 gi|308168061|gb|EFO70189.1| RecA domain protein [Lactobacillus iners LactinV 01V1-a]
          Length = 72

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/51 (62%), Positives = 43/51 (84%)

Query: 44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           I  +S+GS+ LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK 
Sbjct: 2  KISTISTGSIALDTALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKM 52


>gi|327353831|gb|EGE82688.1| meiotic recombination protein dmc1 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 358

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 55/280 (19%), Positives = 95/280 (33%), Gaps = 56/280 (20%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG Q    + +  +S+GS   D  L  GGF    I E+YG    GKT L+      +Q
Sbjct: 86  MELGHQ---RKRVVRISTGSKQFDSILA-GGFQSMSISEVYGEFRCGKTQLSHTMSVVAQ 141

Query: 93  ------KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITD 138
                    G  A++D E         ++           L+N+  ++    E  LE+ +
Sbjct: 142 LPKDMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELLN 201

Query: 139 MLVRSG---AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS---- 191
            L +        +++IDS+     R +  G         + + ++Q L KL         
Sbjct: 202 TLAKEFAGGEYRLLIIDSIMNCF-RVDYCGR---GELADRQQKLNQFLMKLAHMAEGEYR 257

Query: 192 -----------------RSKCILVFINQMRMKIGVM----FGSPETTTGGNALKFYSSVR 230
                                 ++  NQ++   G              GG+ L   S+ R
Sbjct: 258 CVHPHILWTAWLTSCDLEFNVCVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTR 317

Query: 231 LDIR------RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           + +R      RV  I+D       +    +    +  P K
Sbjct: 318 VLLRKGRGDERVAKIQDSPDCPEREAIYVITNGGINDPDK 357


>gi|52695616|pdb|1T4G|A Chain A, Atpase In Complex With Amp-Pnp
 gi|56967254|pdb|1XU4|A Chain A, Atpase In Complex With Amp-Pnp, Magnesium And Potassium
           Co-F
 gi|88193103|pdb|2FPK|A Chain A, Rada Recombinase In Complex With Adp
 gi|88193104|pdb|2FPL|A Chain A, Rada Recombinase In Complex With Amp-Pnp And Low
           Concentration Of K+
 gi|88193105|pdb|2FPM|A Chain A, Rada Recombinase In Complex With Amp-Pnp And High
           Concentration Of K+
 gi|114793501|pdb|2B21|A Chain A, Rada Recombinase In Complex With Amppnp At Ph 6.0
 gi|118138042|pdb|2I1Q|A Chain A, Rada Recombinase In Complex With Calcium
 gi|257097225|pdb|3FYH|A Chain A, Recombinase In Complex With Adp And Metatungstate
          Length = 322

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 86/248 (34%), Gaps = 39/248 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG------------ 95
           +S+ S  LD  LG GG     + E  G   SGKT +   +    Q               
Sbjct: 80  LSTSSSELDSVLG-GGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKG 138

Query: 96  ----GTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQAL----EITDM 139
                   ++D E         ++           L N  +++    +  +    +I D+
Sbjct: 139 EVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDL 198

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           +     + ++VIDS+ +   R E  G         + + + + +  L        C+++ 
Sbjct: 199 IQEGNNIKLVVIDSLTSTF-RNEYTGR---GKLAERQQKLGRHMATLNKLADLFNCVVLV 254

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVK 253
            NQ+  K    FG  E   GG+ +   ++ R  +R      RV  + D   +   +   +
Sbjct: 255 TNQVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVRKGKGDKRVAKLYDSPHLPDAEAIFR 314

Query: 254 VVKNKMAS 261
           + +  +  
Sbjct: 315 ITEKGIQD 322


>gi|84996361|ref|XP_952902.1| DNA repair (Rad51 homologue) protein [Theileria annulata strain
           Ankara]
 gi|65303899|emb|CAI76278.1| DNA repair (Rad51 homologue) protein, putative [Theileria annulata]
          Length = 369

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 85/274 (31%), Gaps = 57/274 (20%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----- 94
                +   ++GS  LD  L  GG   G I EI G   +GK+ L        Q       
Sbjct: 97  EARGNLIKFTTGSSQLDKLL-QGGVETGSITEIIGEFKTGKSQLCHTLAVTCQLPVEQSG 155

Query: 95  -GGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVR 142
             G C +VD+E          +           L N+  ++    +  LE+      ++ 
Sbjct: 156 GEGKCLWVDSEGTFRPERIVSIAKRFGLSPSDCLDNVAYARAYNTDHQLELLVEASAMMA 215

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                ++++DS  +L  R++  G    +   M      + LR L          +V  NQ
Sbjct: 216 QTRFALLIVDSATSLY-RSDYSGRGELASRQMHLC---KFLRALQRIADTFGVAVVITNQ 271

Query: 203 M-----------------------------RMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
           +                             +  I    G+ +   GG+ +   S  RL +
Sbjct: 272 VVARVDAMSTFFGILLLYIIIYCYILINICKFYIDKFVGNDKLPVGGHIIAHASQTRLFL 331

Query: 234 R------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
           R      R+  + D   +   +    +    +  
Sbjct: 332 RQSKGESRICKVYDSPVLPEGEAVFAITDGGIND 365


>gi|125536708|gb|EAY83196.1| hypothetical protein OsI_38408 [Oryza sativa Indica Group]
          Length = 294

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 79/233 (33%), Gaps = 40/233 (17%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            I  V++GS  LD  L  GG   G I EIYG   SGKT L        Q         G 
Sbjct: 92  EIIQVTTGSRELDKIL-DGGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGK 150

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
             ++DAE         ++                                I+++DS  AL
Sbjct: 151 ALYIDAEGTFRPQRLLQIADR---------------------------FAIMIVDSATAL 183

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG--VMFGSPE 215
             R +  G    S   M    +++ LR L          +V  NQ+  ++    MFG   
Sbjct: 184 Y-RTDFSGRGELSARQMH---LAKFLRSLQKLADEFGVAVVITNQVVAQVDGAAMFGPQI 239

Query: 216 TTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
              GGN +   S+ RL +R+  + +    +  +    +       SP    + 
Sbjct: 240 KPIGGNIMAHASTTRLFLRKGRAEERICKVVSSPCLAEAEARFQISPEGVTDV 292


>gi|20088973|ref|NP_615048.1| DNA repair and recombination protein RadB [Methanosarcina
           acetivorans C2A]
 gi|19913822|gb|AAM03528.1| DNA repair protein [Methanosarcina acetivorans C2A]
          Length = 267

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 85/228 (37%), Gaps = 21/228 (9%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +SSG   LD  LG GGF +G + +++G   +GKT + +    +  K G    F+D E   
Sbjct: 50  LSSGCKPLDELLG-GGFERGIVTQVFGAAGTGKTNICIQLAVECVKQGQKVIFIDTEGLS 108

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD-----IIVIDSVAALTPRAE 162
              + +  G + K +  S       + E     VR           +VI   A    R E
Sbjct: 109 PVRFKQIAGENAKEIAGSIIIYEPLSFEEQYSAVREVERIAGENVGLVILDSATSYYRFE 168

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           +E    E       R ++  +  L +   +     V  NQ+   +    G      GG++
Sbjct: 169 LED---EDTGIKSRRELANQIGFLHALARKYGFAAVITNQVYSDV---VGGGVRPLGGSS 222

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           L+  S   L + + G         G +  V + K++        EF I
Sbjct: 223 LEHISKTILRLEKTGE--------GKRRAV-LYKHRSRPEGSSAEFTI 261


>gi|39939201|ref|NP_950967.1| hypothetical protein PAM_715 [Onion yellows phytoplasma OY-M]
 gi|39722310|dbj|BAD04800.1| hypothetical protein [Onion yellows phytoplasma OY-M]
          Length = 61

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 38/57 (66%)

Query: 281 ELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
           E+IDL    +++ KSG+W+SFK +++GQG EN K +L  N +I  ++ + +++   +
Sbjct: 3   EVIDLATNLNLIQKSGSWYSFKDEKIGQGTENVKKYLTNNPKIYNHLVAEIKKRYNI 59


>gi|222617117|gb|EEE53249.1| hypothetical protein OsJ_36165 [Oryza sativa Japonica Group]
          Length = 292

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 79/233 (33%), Gaps = 40/233 (17%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            I  V++GS  LD  L  GG   G I EIYG   SGKT L        Q         G 
Sbjct: 90  EIIQVTTGSRELDKIL-DGGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGK 148

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
             ++DAE         ++                                I+++DS  AL
Sbjct: 149 ALYIDAEGTFRPQRLLQIADR---------------------------FAIMIVDSATAL 181

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG--VMFGSPE 215
             R +  G    S   M    +++ LR L          +V  NQ+  ++    MFG   
Sbjct: 182 Y-RTDFSGRGELSARQMH---LAKFLRSLQKLADEFGVAVVITNQVVAQVDGAAMFGPQI 237

Query: 216 TTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
              GGN +   S+ RL +R+  + +    +  +    +       SP    + 
Sbjct: 238 KPIGGNIMAHASTTRLFLRKGRAEERICKVVSSPCLAEAEARFQISPEGVTDV 290


>gi|16588837|gb|AAL26913.1|AF322003_1 RadA [Methanococcus maripaludis]
          Length = 322

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 88/256 (34%), Gaps = 39/256 (15%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT-- 97
              + +  +S+GS  L   L  GG     + E  G   SGKT +   T    Q       
Sbjct: 72  KQRQSVWRLSTGSTELGTVLA-GGIESQSVTEFAGMFGSGKTQIMHQTCVNLQMREKIFA 130

Query: 98  --------------CAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQAL- 134
                           ++D E         ++           L N  +++    +  + 
Sbjct: 131 DLEGVVEEELEAPKAVYIDTEGTFRPERVVQMAEGAGIDGQTVLDNTFVARAYNSDMQML 190

Query: 135 ---EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
              +I D++     + +++IDS+ +   R E  G         + + + + +  L     
Sbjct: 191 FAEKIEDLIKGGNNIKLVIIDSLTSTF-RNEFTGR---GKLAERQQKLGRHMATLNKLAD 246

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
              CI++  NQ+  K    FG  E   GG+ +   ++ R  +R      RV  + D   +
Sbjct: 247 LYNCIVLVTNQVAAKPDAYFGVAEQAIGGHVVGHAATFRFFLRKSKGDKRVAKLYDSPHL 306

Query: 246 TGNQTRVKVVKNKMAS 261
             ++   ++ +  +  
Sbjct: 307 PDSEAVFRITEKGIQD 322


>gi|115380281|ref|ZP_01467295.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|310821707|ref|YP_003954065.1| RecA protein [Stigmatella aurantiaca DW4/3-1]
 gi|115362710|gb|EAU61931.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|309394779|gb|ADO72238.1| RecA protein [Stigmatella aurantiaca DW4/3-1]
          Length = 293

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/121 (33%), Positives = 60/121 (49%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           Q +    +  + +G   +D  L  GGFP G+ +E+ G  +SG+T+LAL  +A + +    
Sbjct: 24  QAAPRSALATLRTGVEEVDALLPSGGFPLGQALELCGEMASGRTSLALRAVAAAHQERRL 83

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           CA+VD    L    A  +GVDL  LLI +P    Q       L RSGA   +V+D    L
Sbjct: 84  CAWVDGPKELYPPAAAAMGVDLARLLIVRPKLPAQLAWTAVQLARSGAFACVVLDLSQGL 143

Query: 158 T 158
            
Sbjct: 144 A 144


>gi|88604173|ref|YP_504351.1| DNA repair and recombination protein RadA [Methanospirillum
           hungatei JF-1]
 gi|88189635|gb|ABD42632.1| DNA repair and recombination protein RadA [Methanospirillum
           hungatei JF-1]
          Length = 407

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 93/250 (37%), Gaps = 36/250 (14%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGT 97
            ++ + +    +D  LG GGF    I E+YG   SGK+ +        Q         G+
Sbjct: 163 KVKKLRTLVPEVDELLG-GGFETQAITEMYGEFGSGKSQIVHQMAVNVQLPEELGGLNGS 221

Query: 98  CAFVDAEHALDSIYARKLGVDLK-----------NLLISQPDTGEQALEITDM------- 139
             +VD E+        ++   L+           N+ +++  T +  + + +        
Sbjct: 222 VIYVDTENTFRPERIEQMVKGLEIEGADPQEFLKNIHVARAQTSDHQMLLIETSRELAEE 281

Query: 140 -LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
                  V ++++DS+  L  R+E  G         + + +++ +  +         I +
Sbjct: 282 LKAAGKPVKLVIVDSLTGLF-RSEYAGR---GTLAERQQKLNRHMHDIFKLCDEYNAIGL 337

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK------DKDSITGNQTRV 252
             NQ++    V FG P    GGN +   ++ R+ +R+    K      D  ++   +   
Sbjct: 338 VTNQVQSNPAVFFGDPTKPIGGNIVGHTATFRVYLRKSKGGKRIFRLVDSPNLPEGEATF 397

Query: 253 KVVKNKMASP 262
            V +  + S 
Sbjct: 398 LVEEGGLRSC 407


>gi|312137146|ref|YP_004004483.1| DNA repair and recombination protein radb [Methanothermus fervidus
           DSM 2088]
 gi|311224865|gb|ADP77721.1| DNA repair and recombination protein RadB [Methanothermus fervidus
           DSM 2088]
          Length = 234

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 92/236 (38%), Gaps = 28/236 (11%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
             E + + S  +D  LG GG  KG I + YGP  SGKT +A+    +  K G    F+D 
Sbjct: 9   ETEKIPTNSP-IDEILG-GGVEKGTITQFYGPPGSGKTNIAIKLAVEVAKRGKKVIFIDT 66

Query: 104 EHALDSIYARKLGVD-----LKNLLISQPDTGEQALEITDMLV-----RSGAVDIIVIDS 153
           E  L     +++  D       N+LI +P +  +   +   +           D I++DS
Sbjct: 67  EGGLSIERVKQIAGDNFNKVAPNILIYEPSSFYEQGIVIQKINSLLKKEGKKFDAIILDS 126

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
             AL    E                + + +  L     +    +V  N +         +
Sbjct: 127 AVALYRLKEGNSSKLNV-------ELGKQMALLLRIARKYNLAVVITNHIYSLFDEDGSN 179

Query: 214 PETTTGGNALKFYSSVRLDIRRVGS--------IKDKDSITGNQTRVKVVKNKMAS 261
            E   GG  LK++S + ++++   S         + K+   G + R K+V+N ++ 
Sbjct: 180 IE-PVGGTTLKYWSKIIVELKMGSSSGERYAILKRHKNKKEGLKVRFKIVENGLSK 234


>gi|304367643|gb|ADM26629.1| DNA repair protein rad51 [Polypedilum vanderplanki]
          Length = 347

 Score = 74.1 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 64/180 (35%), Gaps = 22/180 (12%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG------GTCAF 100
            +++GS  LD  LG GG   G I E++G   SGKT LA       Q         G C +
Sbjct: 106 SITTGSRELDKLLG-GGIETGSITEVFGEFRSGKTQLAHTLAVTCQLPANSGGGQGKCLY 164

Query: 101 VDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E          +           L N+ +++    +  L +      ++      ++
Sbjct: 165 IDTEGTFRPERLSSIAERFKMDPNEVLDNIAVARAYNTDHQLTLLVHASAIMADTRFALL 224

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DS  AL          G      +   +++ +R L          ++  NQ+   +  
Sbjct: 225 VVDSATALYR----TDYSGRGELAARQMHLAKFMRHLLRMADEFGIAVLITNQVVANVAN 280


>gi|16082070|ref|NP_394496.1| DNA repair and recombination protein RadB [Thermoplasma acidophilum
           DSM 1728]
 gi|10640351|emb|CAC12165.1| DNA repair protein RAD51 related protein [Thermoplasma acidophilum]
          Length = 245

 Score = 74.1 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 88/253 (34%), Gaps = 25/253 (9%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM    + S+ +G+  + +G   +D  L  GG   G I EI+G   SGKT + +     
Sbjct: 15  SIM---DEISLQQGVRRIQTGVGCIDALLN-GGLEGGIITEIFGEGGSGKTNICMIASCS 70

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA---LEITDMLVRSGAVD 147
           +   G    ++D+E      +      D+    + +  + +     +     +       
Sbjct: 71  AMSQGLKVIYIDSEGLSPERFLAVCRSDISMFKLFRVYSLDDQEVAIMKASKMADRDQKI 130

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
            +++    +   R E   D        +     + L  L+S  ++    ++  NQ+   I
Sbjct: 131 GMIVLDSFSEFFRLEKSDD-----RQARIAEFQRQLSLLSSVAAKKNIPVLITNQIYQDI 185

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
                      GG  +       L   R+  + D       + R+ V K++         
Sbjct: 186 DN---GTLLPFGGFLVDHAMKAIL---RIEKMPDG------RRRITVTKHRSVREGVSAM 233

Query: 268 FDIMYGEGISFFG 280
           F I   +G+S  G
Sbjct: 234 FRIT-DDGVSCEG 245


>gi|313124902|ref|YP_004035166.1| DNA repair and recombination protein rada [Halogeometricum
           borinquense DSM 11551]
 gi|312291267|gb|ADQ65727.1| DNA repair and recombination protein RadA [Halogeometricum
           borinquense DSM 11551]
          Length = 343

 Score = 73.7 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 87/275 (31%), Gaps = 57/275 (20%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
              E I  +S G   +D  LG GG     I E+YG   +GK+ +        Q       
Sbjct: 74  ERREQIGKLSWGISEVDDLLG-GGLETQSITEVYGEFGAGKSQVTHQMAVNVQLPPEHGG 132

Query: 94  TGGTCAFVDAEHALDSI--------------------------------YARKLGVDLKN 121
            GG+C FVD+E                                          L   L  
Sbjct: 133 LGGSCIFVDSEDTFRPERIDDMVRGLDDEIIQATMDEREIEGSPDDEAAMEELLNDFLDK 192

Query: 122 LLISQPDTGEQALEITDM--------LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
           + +++       + + +               V ++ +DS+ A   RAE  G        
Sbjct: 193 IHVAKAFNSNHQILLAEKAKELARDHEEDEFPVRLLCVDSLTAHF-RAEYVGR---GQLA 248

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
            + + +++ L  L          ++  NQ+       FG P    GGN L   S+ R+ +
Sbjct: 249 ERQQKLNKHLHDLMRIGDLYNTAVLVTNQVASNPDSYFGDPTQPIGGNILGHTSTFRIYL 308

Query: 234 RRVGSIK------DKDSITGNQTRVKVVKNKMASP 262
           R+    K      D  ++   +  ++V    +   
Sbjct: 309 RKSKGDKRIVRLVDAPNLADGEGIMRVQDGGLKPE 343


>gi|325968532|ref|YP_004244724.1| Rad51 domain-containing protein [Vulcanisaeta moutnovskia 768-28]
 gi|323707735|gb|ADY01222.1| Rad51 domain-containing protein [Vulcanisaeta moutnovskia 768-28]
          Length = 328

 Score = 73.7 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 87/222 (39%), Gaps = 25/222 (11%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH-TIAQSQKTG 95
            +      + V+ +G  GLD A  +GG   G   E  G   +GKT +AL   IA   + G
Sbjct: 85  ERVEALSRMPVLKTGVDGLDNA--VGGLRFGASHEFAGEFGTGKTIMALQTAIASISQFG 142

Query: 96  GTCAFVDAEHALD--------SIYARKLGVDL-----KNLLISQPDTGEQALE----ITD 138
               ++D E  +D             + GVD       +L +  P T +   +       
Sbjct: 143 FNVVYIDTEKTIDHYLDSQLLRSMCNRFGVDYEKMISDHLYVYNPATVDDLEDFIKLKLT 202

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            LV +    +IV+DS+ AL  RA+  G    +    +   +   LR+LT    R   +++
Sbjct: 203 DLVINNNAKVIVVDSITALY-RAQFRGRERLAERQQRLHYVLDWLRRLT---IRLGVLVI 258

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           + NQ+       +   +   GGN L    + R  + R    K
Sbjct: 259 YTNQVMTSP-TGYIEVKMPVGGNVLAHTVNARWLMVRASKSK 299


>gi|15027189|emb|CAC44782.1| RecA protein [Lactobacillus sp. DF1]
          Length = 94

 Score = 73.7 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 54/94 (57%), Positives = 77/94 (81%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           +D  YA +LGV++ +LL+SQP++GEQ LEI +ML+ S AVD++VIDSVAAL P+AEIEG 
Sbjct: 1   MDPKYAAELGVNIDDLLLSQPNSGEQGLEIAEMLIESAAVDVVVIDSVAALVPKAEIEGA 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +G+S  G+QARLMSQALRK+  +I+ +  +++FI
Sbjct: 61  IGDSHVGLQARLMSQALRKMAGTINNTNTLVIFI 94


>gi|154279522|ref|XP_001540574.1| meiotic recombination protein dmc1 [Ajellomyces capsulatus NAm1]
 gi|150412517|gb|EDN07904.1| meiotic recombination protein dmc1 [Ajellomyces capsulatus NAm1]
          Length = 358

 Score = 73.7 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 55/280 (19%), Positives = 96/280 (34%), Gaps = 56/280 (20%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+LG Q    + +  +S+GS   D  L  GGF    I E+YG    GKT L+      +Q
Sbjct: 86  MELGHQ---RKRVVKISTGSKQFDSILA-GGFQSMSISEVYGEFRCGKTQLSHTMSVMAQ 141

Query: 93  ------KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITD 138
                    G  A++D E         ++           L+N+  ++    E  LE+ +
Sbjct: 142 LPKDMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELLN 201

Query: 139 MLVRSG---AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
            L +        +++IDS+     R +  G         + + ++Q L KL         
Sbjct: 202 TLSKEFVGGEYRLLIIDSIMNCF-RVDYCGRGE---LADRQQKLNQFLMKLAHMAEEFNV 257

Query: 196 ILVFI---------------------NQMRMKIGVM----FGSPETTTGGNALKFYSSVR 230
            ++ +                     NQ++   G              GG+ L   S+ R
Sbjct: 258 CVLMVCASKNRESLALGIRAYPTTQTNQVQSDPGASSLFAGADGRKPVGGHILAHASTTR 317

Query: 231 LDIR------RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           + +R      RV  I+D       +    +    +  P K
Sbjct: 318 VLLRKGRGDERVAKIQDSPDCPEREAIYVITNGGINDPDK 357


>gi|109157521|pdb|2F1H|A Chain A, Recombinase In Complex With Amp-Pnp And Potassium
 gi|109157522|pdb|2F1I|A Chain A, Recombinase In Complex With Amp-Pnp
 gi|109157523|pdb|2F1J|A Chain A, Recombinase In Complex With Adp
          Length = 322

 Score = 73.3 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 86/248 (34%), Gaps = 39/248 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG------------ 95
           +S+ S  LD  LG GG     + E  G   SGKT +   +    Q               
Sbjct: 80  LSTSSSELDSVLG-GGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKG 138

Query: 96  ----GTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQAL----EITDM 139
                   ++D +         ++           L N  +++    +  +    +I D+
Sbjct: 139 EVAQPKAVYIDTDGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDL 198

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           +     + ++VIDS+ +   R E  G         + + + + +  L        C+++ 
Sbjct: 199 IQEGNNIKLVVIDSLTSTF-RNEYTGR---GKLAERQQKLGRHMATLNKLADLFNCVVLV 254

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVK 253
            NQ+  K    FG  E   GG+ +   ++ R  +R      RV  + D   +   +   +
Sbjct: 255 TNQVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVRKGKGDKRVAKLYDSPHLPDAEAIFR 314

Query: 254 VVKNKMAS 261
           + +  +  
Sbjct: 315 ITEKGIQD 322


>gi|2108337|emb|CAA73605.1| Rad51 homologue [Trypanosoma brucei]
          Length = 313

 Score = 73.3 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 89/247 (36%), Gaps = 26/247 (10%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---- 94
               +   +V++GS  +D  LG GG   G I E++G   +GKT L        Q      
Sbjct: 66  QEQRKETIMVTTGSREVDKLLG-GGIEVGSITELFGEFRTGKTQLCHTLCVTCQLPLSQG 124

Query: 95  --GGTCAFVDAEHALDSIY----ARKLGVDLKNLLISQP-------DTGEQALEITDMLV 141
              G   ++D E           A +  +D + +L +         D  +Q L      +
Sbjct: 125 GGEGMALYIDTEGTFRPERLVAVAERYSLDPEAVLENVACARAYNTDHQQQLLLQASATM 184

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
               V IIV+DS  AL  R +  G    +   M      ++LR L +  + +  +   + 
Sbjct: 185 AEHRVAIIVVDSATALY-RTDYNGRGELAARQMHLGKFLRSLRNLANEYNVAVVVTNQVV 243

Query: 202 QMRMKIGVMFG-SPETTTGGNALKFYSSVRLDIRRVG------SIKDKDSITGNQTRVKV 254
                    F    +   GG+ +   S+ RL +R+         + D   +  ++    +
Sbjct: 244 ANVDGAAPTFQADSKKPIGGHIMAHASTTRLSLRKGRGEQRIIKVYDSPCLAESEAIFGI 303

Query: 255 VKNKMAS 261
            +N +  
Sbjct: 304 YENGVGD 310


>gi|14520336|ref|NP_125811.1| DNA repair and recombination protein RadB [Pyrococcus abyssi GE5]
 gi|13878700|sp|Q9V2F6|RADB_PYRAB RecName: Full=DNA repair and recombination protein radB
 gi|5457551|emb|CAB49042.1| radB DNA repair and recombination protein [Pyrococcus abyssi GE5]
          Length = 239

 Score = 73.3 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 89/232 (38%), Gaps = 28/232 (12%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +++G  GLD  LG GG  +G I+++YGP ++GKTT A+     ++   G  A+VD E  
Sbjct: 12  TLTTGVKGLDELLG-GGVARGVILQVYGPFATGKTTFAMQVGLLNE---GKVAYVDTEGG 67

Query: 107 LDSIYARKLGVD--------LKNLLISQPDTGEQALEITD--MLVRSGAVDIIVIDSVAA 156
                 +++           L   +I +P    +   I      V S    ++V+DS+ A
Sbjct: 68  FSPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSDKFSLVVVDSLTA 127

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM--FGSP 214
              RAE   D  E         +++ L+ L     +    ++ +NQ+             
Sbjct: 128 HY-RAEGSRDHVE---------LAKQLQVLQWLARKKNVAVIVVNQVYYDSNTNTLRPIA 177

Query: 215 ETTTGGNALKF--YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           E T G        +   R+ +R     + +    G     K+    +    K
Sbjct: 178 EHTLGYRTKDILRFEKFRVGVRLAVLERHRFRPEGGIVYFKITDKGIEDVLK 229


>gi|150399289|ref|YP_001323056.1| DNA repair and recombination protein RadA [Methanococcus vannielii
           SB]
 gi|150011992|gb|ABR54444.1| DNA repair and recombination protein RadA [Methanococcus vannielii
           SB]
          Length = 322

 Score = 73.3 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 90/254 (35%), Gaps = 39/254 (15%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ--------- 92
            + +  +S+GS  LD  L  GG     + E  G   SGKT +   +    Q         
Sbjct: 74  RKSVWRLSTGSKELDEVLA-GGLESQSVTEFAGMYGSGKTQIMHQSCVNLQIASKIFAET 132

Query: 93  -------KTGGTCAFVDAEHALDSIYA----RKLGVD----LKNLLISQPDTGEQAL--- 134
                         ++D E               GVD    L N  +++    +  +   
Sbjct: 133 ENVLEKELPNPKSVYIDTEGTFRPERILQMAEGAGVDGQYVLDNTFVARAYNSDMQMLFA 192

Query: 135 -EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
            +I D++     + +++IDS+ +   R E  G         + + + + +  L       
Sbjct: 193 EKIEDLIKGGNNIKLVIIDSLTSAF-RNEFTGR---GKLAERQQKLGRHMATLNKLADLH 248

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITG 247
            C+++  NQ+  K    FG  E   GG+ +   ++ R  +R      RV  + D   +  
Sbjct: 249 NCVVLVTNQVAAKPDAFFGVAEQAIGGHVVGHAATFRFFLRKSKGDKRVAKLYDSPHLPD 308

Query: 248 NQTRVKVVKNKMAS 261
           ++   ++ +  +  
Sbjct: 309 SEAVFRITEKGIQD 322


>gi|21227471|ref|NP_633393.1| DNA repair and recombination protein RadB [Methanosarcina mazei
           Go1]
 gi|20905843|gb|AAM31065.1| DNA repair protein [Methanosarcina mazei Go1]
          Length = 248

 Score = 73.3 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 85/228 (37%), Gaps = 21/228 (9%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +SSG   LD  LG GGF +G + +++G   +GKT + +    +  K G    F+D E   
Sbjct: 31  LSSGCKPLDELLG-GGFERGIVTQVFGAAGTGKTNICIQLAVECVKQGQKVIFIDTEGLS 89

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD-----IIVIDSVAALTPRAE 162
              + +  G + K +  S       + E     VR           +V+   A    R E
Sbjct: 90  PVRFKQIAGENAKEIARSIIIYEPLSFEEQYSSVREVERIAGENVGLVVLDSATSYYRYE 149

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           +E    +       R ++  +  L +   +     +  NQ+   +    G      GG++
Sbjct: 150 LED---DETGIKSRRELANQIGFLHALARKHGFAALITNQVYSDV---VGGGVRPLGGSS 203

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           L+  S   + + + G         G +  V + K++        EF I
Sbjct: 204 LEHISKTIIRLEKTGE--------GTRRAV-LYKHRSRPEGSSAEFTI 242


>gi|125535754|gb|EAY82242.1| hypothetical protein OsI_37447 [Oryza sativa Indica Group]
          Length = 348

 Score = 73.3 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 87/261 (33%), Gaps = 53/261 (20%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K  EAA   + + +  G+           + +  +++GS  LD  LG GG     I E 
Sbjct: 78  DKICEAAEKLLSQGFMTGS-----DLLIKRKSVVRITTGSQALDELLG-GGIETLCITEA 131

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           +G   SGKT LA      +Q                             ++ ++  T E 
Sbjct: 132 FGEFRSGKTQLAHTLCVSTQ-----------------------------IIYARAYTYEH 162

Query: 133 ALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
              +       +      ++++DSV AL          G      + + ++Q L +LT  
Sbjct: 163 QYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAERQQKLAQMLSRLTKI 218

Query: 190 ISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
                  +   NQ+    G       P+   GG+ L   +++RL +R+           G
Sbjct: 219 AEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLRKGK---------G 269

Query: 248 NQTRVKVVKNKMASPFKQVEF 268
            Q   K+         + + F
Sbjct: 270 EQRVCKIFDAPNLPEGEAISF 290


>gi|94971071|ref|YP_593119.1| RecA/RadA recombinase-like [Candidatus Koribacter versatilis
           Ellin345]
 gi|94553121|gb|ABF43045.1| RecA/RadA recombinase-like protein [Candidatus Koribacter
           versatilis Ellin345]
          Length = 252

 Score = 73.3 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 15/164 (9%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
            V ++G   LD   G GG P G + E++GPE SG+T++AL  +AQ  + G  CA++D   
Sbjct: 32  PVQTTGIAALDRLTG-GGLPVGAVCELFGPECSGRTSVALAFLAQITREGTACAWIDVAD 90

Query: 106 ALDSIYARKLGVDLKNLLISQPDTG-------------EQALEITDMLVRSGAVDIIVID 152
           +LD   A   GVDL+ LL  +                 +QAL   D+++++G    +V D
Sbjct: 91  SLDPESAAACGVDLRRLLWVRCSDAETRRARGKMWSRLDQALRAADLVLQAGGFGAVVFD 150

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            + A+ P   +   +        A   +QA   L S +S +K  
Sbjct: 151 -MGAVPPEKALRVPLASWFRFRAAAERTQATFLLLSQVSCAKSC 193


>gi|27065821|pdb|1N0W|A Chain A, Crystal Structure Of A Rad51-Brca2 Brc Repeat Complex
          Length = 243

 Score = 73.3 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 75/241 (31%), Gaps = 25/241 (10%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            I  +++GS  LD  L  GG   G I E +G   +GKT +        Q         G 
Sbjct: 2   EIIQITTGSKELDKLL-QGGIETGSITEXFGEFRTGKTQICHTLAVTCQLPIDRGGGEGK 60

Query: 98  CAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQA---LEITDMLVRSGAV 146
             ++D E          +           L N+  ++    +     L            
Sbjct: 61  AXYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAXXVESRY 120

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            ++++DS  AL  R +  G    S          + L +L      +  I   +      
Sbjct: 121 ALLIVDSATALY-RTDYSGRGELSARQXHLARFLRXLLRLADEFGVAVVITNQVVAQVDG 179

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMA 260
                  P+   GGN +   S+ RL +R      R+  I D   +   +    +  + + 
Sbjct: 180 AAXFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAXFAINADGVG 239

Query: 261 S 261
            
Sbjct: 240 D 240


>gi|14590064|ref|NP_142128.1| DNA repair and recombination protein RadB [Pyrococcus horikoshii
           OT3]
 gi|6225912|sp|O57859|RADB_PYRHO RecName: Full=DNA repair and recombination protein radB
 gi|3256505|dbj|BAA29188.1| 228aa long hypothetical DNA repair protein [Pyrococcus horikoshii
           OT3]
          Length = 228

 Score = 73.0 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 94/243 (38%), Gaps = 31/243 (12%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+ GS+  +   +  +++G  GLD  LG GG  +  I+++YGP ++GKTT A+     ++
Sbjct: 1   MK-GSKSEVQGMV--LTTGVKGLDELLG-GGVARRVILQVYGPFATGKTTFAMQVGLLNE 56

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITD--MLVR 142
              G  A+VD E         ++           L   +I +P    +   +      + 
Sbjct: 57  ---GKVAYVDTEGGFSPERLAQMARSRGLDPEKALSKFIIFEPMDLNEQRRVISKLKTIV 113

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                ++V+DS+ A   RAE   + GE         +++ L+ L     R    ++ INQ
Sbjct: 114 DEKFSLVVVDSLTAHY-RAEGSKNYGE---------LAKQLQVLQWLARRKNVAVIVINQ 163

Query: 203 MRMKIGVM--FGSPETTTGGNALKF--YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           +             E T G        +  +R+ +R     + +    G     K+    
Sbjct: 164 VYHDSNSNSLRPIAEHTLGYRTKDILRFEKLRVGVRLAVLERHRFRPEGGIVYFKITDKG 223

Query: 259 MAS 261
           +  
Sbjct: 224 LED 226


>gi|400966|sp|Q02347|RECA_LACDE RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|149592|gb|AAA25251.1| recombination and repair protein [Lactobacillus delbrueckii subsp.
           bulgaricus]
          Length = 104

 Score = 73.0 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 65/103 (63%), Positives = 87/103 (84%)

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           YA  LGVD+  L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVA L PRAEIEG+MG+S
Sbjct: 2   YAEALGVDIDQLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAVLVPRAEIEGEMGDS 61

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
             G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+
Sbjct: 62  HVGLQARLMSQALRKLSGTIAKTKTIAIFINQIREKVGVMFGN 104


>gi|222480047|ref|YP_002566284.1| DNA repair and recombination protein RadB [Halorubrum lacusprofundi
           ATCC 49239]
 gi|222452949|gb|ACM57214.1| DNA repair and recombination protein RadB [Halorubrum lacusprofundi
           ATCC 49239]
          Length = 235

 Score = 73.0 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 94/235 (40%), Gaps = 29/235 (12%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + + +G   +D  LG GGF +G + ++YGP ++GKT LAL    +    G    ++D E 
Sbjct: 3   DPIPTGCRPVDDLLG-GGFERGVVTQVYGPPAAGKTNLALAAAVEVAAGGDRALYIDTEG 61

Query: 106 ALDSIYARKLG-----VDLKNLLISQP---------DTGEQALEITDMLVRSGAVDIIVI 151
                + +         D+   +             D  +Q   + D    +  +++IV+
Sbjct: 62  LSIDRFEQMAAGRANRPDVDETVEEIASRLVISEAYDFDDQREAVRDAEELAEEIELIVL 121

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DS      R E     G++  G   R +++ +  L S   R    +V  NQ+        
Sbjct: 122 DSATGFY-RLE---RAGDTEGGESLRKVAKQVTHLLSLARRHDIAVVITNQVFTDPDS-- 175

Query: 212 GSPETTTGGNALKFYSS--VRLDIRRVGS-----IKDKDSITGNQTRVKVVKNKM 259
              +   GGN L  ++   VR+D  R G+      K +    G+    ++V + +
Sbjct: 176 -DRDRALGGNTLNHWTGAIVRVDRFRGGNRRVTLEKHRSKPAGDTATFQIVADGL 229


>gi|308809359|ref|XP_003081989.1| Meiotic recombination protein DMC1, putative (ISS) [Ostreococcus
           tauri]
 gi|116060456|emb|CAL55792.1| Meiotic recombination protein DMC1, putative (ISS) [Ostreococcus
           tauri]
          Length = 371

 Score = 72.6 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 55/282 (19%), Positives = 113/282 (40%), Gaps = 34/282 (12%)

Query: 5   KEMNIVDKSKALEAALSQI-QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           K  +     K LE+AL  + +     G  +         +G+  ++ G+  +D  L  GG
Sbjct: 93  KGFSDAKADKVLESALKMLPESE--SGGFITAAEDCERRKGVLHITCGAAAVDAILN-GG 149

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQK---TGGTC---AFVDAEHALDSIYARKLGV 117
           F    I EI+G    GKT +       +Q     GG C   A++D E+   S     +  
Sbjct: 150 FETRAITEIFGEWRCGKTQICHTLAVTTQMPIEMGGGCSKVAWIDTENTFRSDRLEAIAD 209

Query: 118 D--------LKNLLISQPDTGEQALEITDML---VRSGAVDIIVIDSVAALTPRAEIEGD 166
                    L N+++++ DT +Q ++    +   +      ++++DS+ A+         
Sbjct: 210 RFGLDRDAVLSNVMVARVDTVDQMMQALIAIGAKMAEEPFKLLIVDSIMAIFR----VDY 265

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM---FGSPETTTGGNAL 223
           +       + + ++Q L +L          +V  NQ++   G M      P+   GG+ L
Sbjct: 266 VARGELSERQQTLNQFLSRLRKLAEEFNVAVVLTNQVQSDPGGMAFAGVEPKKPIGGHVL 325

Query: 224 KFYSSVRLDIRRVGS----IK--DKDSITGNQTRVKVVKNKM 259
              S++RL +R+  +    IK     ++  ++   ++ +  +
Sbjct: 326 AHASTIRLQVRKGRAEARVIKVLQGPTLKEDEAEFQITEGGV 367


>gi|159469155|ref|XP_001692733.1| DNA recombination protein [Chlamydomonas reinhardtii]
 gi|45685351|gb|AAS75433.1| putative DNA repair protein RAD51 [Chlamydomonas reinhardtii]
 gi|158277986|gb|EDP03752.1| DNA recombination protein [Chlamydomonas reinhardtii]
          Length = 343

 Score = 72.6 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 85/248 (34%), Gaps = 30/248 (12%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---- 94
               + +  +++G   LD  L  GG   G I EIYG    GKT L        Q      
Sbjct: 96  AEQRKEVISITTGCKELDTIL-EGGIETGSITEIYGEYRCGKTQLCHTLCVTCQLPVEMG 154

Query: 95  --GGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDM---LV 141
              G   ++D E         ++           L N+  ++    E  + +      ++
Sbjct: 155 GGEGKAMYIDTEGTFRPQRLSQIAERYGLAPEDVLNNVAYARAHNTEHQMRLLQEAAGMM 214

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
                 ++V+DS  AL  R E  G    S+  +      +AL+ +      +  +   + 
Sbjct: 215 ADSRFSLVVVDSATALY-RTEFNGRGELSIRQILLGRFLRALQNIADEYGVAVVVTNQVV 273

Query: 202 QMRMKIGVMFG-SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
                 G MF        GGN +   ++ RL +R+           G    VK++ +   
Sbjct: 274 ANPDGAGAMFAGPQTKPIGGNIMAHATTTRLSVRKGR---------GENRVVKIIASPSL 324

Query: 261 SPFKQVEF 268
            P ++  F
Sbjct: 325 -PEREANF 331


>gi|71755957|ref|XP_828893.1| RAD51 protein [Trypanosoma brucei TREU927]
 gi|70834279|gb|EAN79781.1| RAD51 protein [Trypanosoma brucei]
          Length = 373

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 89/247 (36%), Gaps = 26/247 (10%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---- 94
               +   +V++GS  +D  LG GG   G I E++G   +GKT L        Q      
Sbjct: 126 QEQRKETIMVTTGSREVDKLLG-GGIEVGSITELFGEFRTGKTQLCHTLCVTCQLPLSQG 184

Query: 95  --GGTCAFVDAEHALDSIY----ARKLGVDLKNLLISQP-------DTGEQALEITDMLV 141
              G   ++D E           A +  +D + +L +         D  +Q L      +
Sbjct: 185 GGEGMALYIDTEGTFRPERLVAVAERYSLDPEAVLENVACARAYNTDHQQQLLLQASATM 244

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
               V IIV+DS  AL  R +  G    +   M      ++LR L +  + +  +   + 
Sbjct: 245 AEHRVAIIVVDSATALY-RTDYNGRGELAARQMHLGKFLRSLRNLANEYNVAVVVTNQVV 303

Query: 202 QMRMKIGVMFG-SPETTTGGNALKFYSSVRLDIRRVG------SIKDKDSITGNQTRVKV 254
                    F    +   GG+ +   S+ RL +R+         + D   +  ++    +
Sbjct: 304 ANVDGAAPTFQADSKKPIGGHIMAHASTTRLSLRKGRGEQRIIKVYDSPCLAESEAIFGI 363

Query: 255 VKNKMAS 261
            +N +  
Sbjct: 364 YENGVGD 370


>gi|46810416|gb|AAT01624.1| RecA [Desulfuromonas palmitatis]
          Length = 77

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 55/74 (74%), Positives = 68/74 (91%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGA+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT +IS+S C ++FI
Sbjct: 4   VRSGAIDVLVVDSVAALVPRAEIEGEMGDSHMGLQARLMSQALRKLTGTISKSNCCVIFI 63

Query: 201 NQMRMKIGVMFGSP 214
           NQ+RMKIGVMFG+P
Sbjct: 64  NQIRMKIGVMFGNP 77


>gi|5802566|gb|AAD51713.1|AF174136_1 RAD51 [Trypanosoma brucei]
          Length = 373

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 89/247 (36%), Gaps = 26/247 (10%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---- 94
               +   +V++GS  +D  LG GG   G I E++G   +GKT L        Q      
Sbjct: 126 QEQRKETIMVTTGSREVDKLLG-GGIEVGSITELFGEFRTGKTQLCHTLCVTCQLPLSQG 184

Query: 95  --GGTCAFVDAEHALDSIY----ARKLGVDLKNLLISQP-------DTGEQALEITDMLV 141
              G   ++D E           A +  +D + +L +         D  +Q L      +
Sbjct: 185 GGEGMALYIDTEGTFRPERLVAVAERYSLDPEAVLENVACARAYNTDHQQQLLLQASATM 244

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
               V IIV+DS  AL  R +  G    +   M      ++LR L +  + +  +   + 
Sbjct: 245 AEHRVAIIVVDSATALY-RTDYNGRGELAARQMHLGKFLRSLRNLANEYNVAVVVTNQVV 303

Query: 202 QMRMKIGVMFG-SPETTTGGNALKFYSSVRLDIRRVG------SIKDKDSITGNQTRVKV 254
                    F    +   GG+ +   S+ RL +R+         + D   +  ++    +
Sbjct: 304 ANVDGAAPTFQADSKKPIGGHIMAHASTTRLSLRKGRGEQRIIKVYDSPCLAESEAIFGI 363

Query: 255 VKNKMAS 261
            +N +  
Sbjct: 364 YENGVGD 370


>gi|159484887|ref|XP_001700483.1| Rad51-like protein [Chlamydomonas reinhardtii]
 gi|158272235|gb|EDO98038.1| Rad51-like protein [Chlamydomonas reinhardtii]
          Length = 343

 Score = 72.2 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 92/237 (38%), Gaps = 29/237 (12%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            I  + +GS  LD  LG GGF    + E++G    GKT LA      +Q         G 
Sbjct: 101 EIIRIKTGSTALDELLG-GGFETKSLTEMFGEWRCGKTMLAHTLCVTTQLPQEEGGGSGK 159

Query: 98  CAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQA----LEITDMLVRSGA 145
            AF+D E        +++           L N+++++  T E      + +T ++     
Sbjct: 160 AAFIDTEGTFRPELVKQIAERFGLDPDAVLGNIVVARAHTSEHQADLLISLTALMAEEAC 219

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
             ++V+DS+ A   R +  G    +    +   +   L+K++   + +  +   +     
Sbjct: 220 FRLLVVDSLTA-PFRTDYTGRGELAERQQKLNNVLAKLKKISEEFNVAVVVTNQVVSDPG 278

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
              +    P+   GG+ +   S+ RL +R+           G Q  +KVV +   + 
Sbjct: 279 GGAMFVSDPKKPVGGHVMAHASTTRLSLRKGK---------GEQRLIKVVASPCLAE 326


>gi|46810414|gb|AAT01616.1| RecA [Desulfuromonas acetoxidans DSM 684]
          Length = 77

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 55/74 (74%), Positives = 69/74 (93%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGA+D++V+DSVAAL PRAEIEG+MG+S  G+QARLMSQALRKLT++IS+S C ++FI
Sbjct: 4   VRSGAIDVLVVDSVAALVPRAEIEGEMGDSHMGLQARLMSQALRKLTATISKSNCCVIFI 63

Query: 201 NQMRMKIGVMFGSP 214
           NQ+RMKIGVMFG+P
Sbjct: 64  NQIRMKIGVMFGNP 77


>gi|46810418|gb|AAT01635.1| RecA [Pelobacter carbinolicus DSM 2380]
          Length = 78

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/74 (72%), Positives = 68/74 (91%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGA+D++VIDSVAAL PRAEIEG+MG++  G+QARLMSQALRKLT +I++S C ++FI
Sbjct: 5   VRSGAIDVLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTGTINKSNCCVIFI 64

Query: 201 NQMRMKIGVMFGSP 214
           NQ+RMKIGVMFG+P
Sbjct: 65  NQIRMKIGVMFGNP 78


>gi|255075467|ref|XP_002501408.1| Rad51 DNA recombinase 1 [Micromonas sp. RCC299]
 gi|226516672|gb|ACO62666.1| Rad51 DNA recombinase 1 [Micromonas sp. RCC299]
          Length = 344

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 90/250 (36%), Gaps = 30/250 (12%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------ 92
            ++ +   +V++G+  LD  LG GGF  G + EIYG   +GKT L        Q      
Sbjct: 97  QAVRQDTIMVTTGASKLDELLG-GGFESGSLTEIYGEFRTGKTQLCHTLAVTCQLPLDQG 155

Query: 93  KTGGTCAFVDAEHALDSIY----ARKLGVD----LKNLLISQPDTGEQALEITDM---LV 141
              G   ++D E           A + G+D    L N+  ++    E   E+      ++
Sbjct: 156 GAEGKAMYIDTEGTFRPQRLIAIAERFGMDPNAVLDNVAYAKAHNTEHQSELLVAAAGMM 215

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
                 +I++DSV  L  R E EG    S   M      + L +L      +  +   + 
Sbjct: 216 AEARFGVIIVDSVTNLF-RTEYEGRGELSARQMHLGKFLRHLTRLADEFGVAVVVTNQVV 274

Query: 202 QMRM-KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
                       +     GGN +   S+ R+ +R+             + R+  +     
Sbjct: 275 ANPDGNAMFAGANALKPIGGNIMAHASTTRIALRKGR----------GENRIAKIACSPV 324

Query: 261 SPFKQVEFDI 270
            P  + +F I
Sbjct: 325 LPESEAQFSI 334


>gi|52548595|gb|AAU82444.1| recombinase [uncultured archaeon GZfos17F1]
          Length = 324

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 91/256 (35%), Gaps = 39/256 (15%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
              + I  +  G   +D  +G GGF    I E+YG   SGKT +A       Q       
Sbjct: 74  ERRKEIGKLKLGCTEVDNMMG-GGFETQAITEVYGEFGSGKTQIAHQLAVNVQLPVGLGG 132

Query: 94  TGGTCAFVDAEHALDSIYARKLGVD--------------LKNLLISQPDTGEQALEITDM 139
             G+   +D E+       + +                 LKN+ +++       + + D 
Sbjct: 133 LYGSVIIIDTENTFRPDRIKSMVEGAAKRYETEYDPEEFLKNIHVARAYNSNHQILLMDT 192

Query: 140 LVR--------SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
                         V ++++DS+ A   RAE  G         + + +++ L  L     
Sbjct: 193 ASELADSLRDTDMPVRLLIVDSLTAHF-RAEYVGR---GTLADRQQKLNKHLHALMRFGD 248

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245
            +  ++   NQ+  K    FG P    GG+ L   S+ RL +R      RV  + D  ++
Sbjct: 249 LNNAMVFVTNQVMSKPDAFFGDPTKPIGGHILGHTSTFRLYLRKSKGDKRVAKLVDSPNL 308

Query: 246 TGNQTRVKVVKNKMAS 261
              +    V +  +  
Sbjct: 309 PDGEALYTVTQEGLFD 324


>gi|167042704|gb|ABZ07424.1| putative recA bacterial DNA recombination protein [uncultured
           marine crenarchaeote HF4000_ANIW133O4]
          Length = 367

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 78/223 (34%), Gaps = 26/223 (11%)

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKLGVD- 118
              + E+YG   SGKT          QK        GT  ++D E+         +    
Sbjct: 104 TQALTEVYGEFGSGKTQFCHTMCVTVQKPKEEGGLEGTVLYIDTENTFRPERIVSIAKIH 163

Query: 119 -------LKNLLISQPDTGEQA---LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
                  L  +++++          LE    +++   V ++++DS   L  RAE    +G
Sbjct: 164 GMDPEKVLDRIIVARAYNSAHQTLILEEASQMIKENNVKLLIVDSAVGLF-RAEY---LG 219

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
                ++ + +++ +  L        C  +  NQ+     V FG P    GGN +   S+
Sbjct: 220 RGTLAIRQQRLNKFVHLLVRIAEVYNCAALATNQVMASPDVFFGDPTRPIGGNVVAHTST 279

Query: 229 VRLDIRRVGSIK-----DKDSITGNQTRVKVVKNKMASPFKQV 266
            R+  ++ G  +     D       +    + +  +  P    
Sbjct: 280 YRIYFKKSGKKRIARMVDSPHHPEQEVIFALGEAGVIDPDSDT 322


>gi|13878673|sp|P81415|RADB_PYRFU RecName: Full=DNA repair and recombination protein radB
 gi|2967439|dbj|BAA25166.1| unnamed protein product [Pyrococcus furiosus DSM 3638]
 gi|3560539|gb|AAC34999.1| recombinase [Pyrococcus furiosus DSM 3638]
          Length = 225

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 94/232 (40%), Gaps = 28/232 (12%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
             E++++G  GLD  LG GG  KG I+++YGP ++GKTT A+     ++   G  A+VD 
Sbjct: 3   NTELLTTGVKGLDELLG-GGVAKGVILQVYGPFATGKTTFAMQVGLLNE---GKVAYVDT 58

Query: 104 EHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDML--VRSGAVDIIVIDS 153
           E         ++           L+  +I +P    +  ++   L  + +    ++V+DS
Sbjct: 59  EGGFSPERLAQMAESRNLDVEKALEKFVIFEPMDLNEQRQVIARLKNIVNEKFSLVVVDS 118

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
             A   RAE   + GE         +S+ L+ L     R    ++ +NQ+          
Sbjct: 119 FTAHY-RAEGSREYGE---------LSKQLQVLQWIARRKNVAVIVVNQVYYDSNSGILK 168

Query: 214 P--ETTTGGNALKF--YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           P  E T G        +  +R+ +R     + +    G     K+    +  
Sbjct: 169 PIAEHTLGYKTKDILRFERLRVGVRIAVLERHRFRPEGGMVYFKITDKGLED 220


>gi|299137468|ref|ZP_07030650.1| RecA domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298600873|gb|EFI57029.1| RecA domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 345

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 9/123 (7%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           G   +D  L  GG P G + E+ GPE SG+T+ AL  +++  +TG  CA++D  ++L   
Sbjct: 37  GIASVDELLA-GGLPLGAVTEMVGPECSGRTSFALSFVSRMTQTGKVCAWIDVSNSLHPE 95

Query: 111 YARKLGVDLKNLLISQ--------PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            A  +G+DL  LL  +        P T   +  + +  +    +   +        PR E
Sbjct: 96  SAAAVGMDLSRLLWVRCGVQASNAPPTPTNSFALPEKYLVPPPIKKGLHGGGFGPHPRHE 155

Query: 163 IEG 165
           ++G
Sbjct: 156 VKG 158


>gi|15027131|emb|CAC44781.1| RecA protein [Lactobacillus rhamnosus]
          Length = 92

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 60/92 (65%), Positives = 76/92 (82%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           +D  YA  LGV++  LL+SQPDTGEQ LEI D LV SGA+DI+V+DSVAAL PRAEIEGD
Sbjct: 1   MDPKYAAALGVNIDELLLSQPDTGEQGLEIADELVASGAIDILVVDSVAALVPRAEIEGD 60

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           MG++  G+QARLMSQALRKL+ +I+++K I +
Sbjct: 61  MGDAHVGLQARLMSQALRKLSGAINKTKTIAL 92


>gi|46810410|gb|AAT01607.1| RecA [Geobacter metallireducens]
          Length = 77

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 59/77 (76%), Positives = 70/77 (90%)

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           +MLVRSGAVD++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  IS+S C +
Sbjct: 1   EMLVRSGAVDVLVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGIISKSNCCV 60

Query: 198 VFINQMRMKIGVMFGSP 214
           +FINQ+RMKIGVMFGSP
Sbjct: 61  IFINQIRMKIGVMFGSP 77


>gi|13878692|sp|Q9HJD3|RADB_THEAC RecName: Full=DNA repair and recombination protein radB
          Length = 229

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 85/247 (34%), Gaps = 22/247 (8%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
            + S+ +G+  + +G   +D  L  GG   G I EI+G   SGKT + +     +   G 
Sbjct: 2   DEISLQQGVRRIQTGVGCIDALLN-GGLEGGIITEIFGEGGSGKTNICMIASCSAMSQGL 60

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA---LEITDMLVRSGAVDIIVIDS 153
              ++D+E      +      D+    + +  + +     +     +        +++  
Sbjct: 61  KVIYIDSEGLSPERFLAVCRSDISMFKLFRVYSLDDQEVAIMKASKMADRDQKIGMIVLD 120

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
             +   R E   D        +     + L  L+S  ++    ++  NQ+   I      
Sbjct: 121 SFSEFFRLEKSDD-----RQARIAEFQRQLSLLSSVAAKKNIPVLITNQIYQDIDN---G 172

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
                GG  +       L   R+  + D       + R+ V K++         F I   
Sbjct: 173 TLLPFGGFLVDHAMKAIL---RIEKMPDG------RRRITVTKHRSVREGVSAMFRIT-D 222

Query: 274 EGISFFG 280
           +G+S  G
Sbjct: 223 DGVSCEG 229


>gi|37778910|gb|AAO72729.1| Rad51 [Trypanosoma cruzi]
          Length = 371

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 93/257 (36%), Gaps = 29/257 (11%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
              + I +V++GS  +D  LG GG   G I E++G   +GKT L        Q       
Sbjct: 125 EARKEIIMVTTGSREVDKLLG-GGIETGGIRELFGEFRTGKTQLCHTLCVTCQLPISQGG 183

Query: 94  TGGTCAFVDAEHALDSIY----ARKLGVDLKNLLISQP-------DTGEQALEITDMLVR 142
             G   ++D E           A +  +D +++L +         D  +Q L     ++ 
Sbjct: 184 AEGMPLYIDTEGTFRPERLVAVAERYKLDPQDVLSNVACARAFNTDHQQQLLLQASAMMA 243

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                II++DS  AL  R +  G    +   M      ++L  L      +  +   +  
Sbjct: 244 ENRFAIIIVDSATALY-RTDYSGRNELAARQMHLGKFLRSLHNLAEEYGVAVVVTNQVVA 302

Query: 203 MRMKIGVMFGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
                  MF +  +   GG+ +   S+ RL +R+           G Q  +KV  +   +
Sbjct: 303 NVDGSAQMFQADAKKPIGGHIMAHASTTRLSLRKGR---------GEQRIMKVYDSPCLA 353

Query: 262 PFKQVEFDIMYGEGISF 278
             + +      G G + 
Sbjct: 354 EAEAIFGIYEDGVGDAR 370


>gi|256271303|gb|EEU06373.1| Dmc1p [Saccharomyces cerevisiae JAY291]
          Length = 313

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 57/277 (20%), Positives = 104/277 (37%), Gaps = 50/277 (18%)

Query: 12  KSKAL-EAALSQIQRVYGKGAIMQLG-----SQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           K K L E  + +I+   GK  I+Q+G      Q  I + +  +S+GS  LD  LG GG  
Sbjct: 57  KIKGLSEVKVEKIKEAAGK--IIQVGFIPATVQLDIRQRVYSLSTGSKQLDSILG-GGIM 113

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK----- 120
              I E++G    G+                  A++D E        +++    +     
Sbjct: 114 TMSITEVFGEFRCGR----------------KVAYIDTEGTFRPERIKQIAEGYELDPES 157

Query: 121 ---NLLISQPDTGEQALEITDM---LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
              N+  ++    E  +E+ +     + SG   +IV+DS+ A   R +  G    S    
Sbjct: 158 CLANVSYARALNSEHQMELVEQLGEELSSGDYRLIVVDSIMA-NFRVDYCGRGELS---E 213

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM----FGSPETTTGGNALKFYSSVR 230
           + + ++Q L KL          +   NQ++   G              GG+ L   S+ R
Sbjct: 214 RQQKLNQHLFKLNRLAEEFNVAVFLTNQVQSDPGASALFASADGRKPIGGHVLAHASATR 273

Query: 231 LDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
           + +R      RV  ++D   +   +    + +  +  
Sbjct: 274 ILLRKGRGDERVAKLQDSPDMPEKECVYVIGEKGITD 310


>gi|256017141|ref|NP_597994.3| DNA repair protein RAD51 homolog 1 isoform 2 [Homo sapiens]
 gi|256017143|ref|NP_001157741.1| DNA repair protein RAD51 homolog 1 isoform 2 [Homo sapiens]
 gi|47077076|dbj|BAD18467.1| unnamed protein product [Homo sapiens]
 gi|119612841|gb|EAW92435.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae), isoform
           CRA_e [Homo sapiens]
 gi|158257370|dbj|BAF84658.1| unnamed protein product [Homo sapiens]
          Length = 340

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 77/227 (33%), Gaps = 30/227 (13%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARK 114
            GG   G I E++G   +GKT +        Q         G   ++D E          
Sbjct: 115 TGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLA 174

Query: 115 L--------GVDLKNLLISQPDTGEQA---LEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           +           L N+  ++    +     L     ++      ++++DS  AL  R + 
Sbjct: 175 VAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALY-RTDY 233

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG---VMFGSPETTTGG 220
            G    S   M    +++ LR L          +V  NQ+  ++    +    P+   GG
Sbjct: 234 SGRGELSARQMH---LARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGG 290

Query: 221 NALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
           N +   S+ RL +R      R+  I D   +   +    +  + +  
Sbjct: 291 NIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGD 337


>gi|114656382|ref|XP_001144544.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]
          Length = 340

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 77/227 (33%), Gaps = 30/227 (13%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARK 114
            GG   G I E++G   +GKT +        Q         G   ++D E          
Sbjct: 115 TGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLA 174

Query: 115 L--------GVDLKNLLISQPDTGEQA---LEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           +           L N+  ++    +     L     ++      ++++DS  AL  R + 
Sbjct: 175 VAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALY-RTDY 233

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG---VMFGSPETTTGG 220
            G    S   M    +++ LR L          +V  NQ+  ++    +    P+   GG
Sbjct: 234 SGRGELSARQMH---LARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGG 290

Query: 221 NALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
           N +   S+ RL +R      R+  I D   +   +    +  + +  
Sbjct: 291 NIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGD 337


>gi|57642166|ref|YP_184644.1| DNA repair and recombination protein RadB [Thermococcus
           kodakarensis KOD1]
 gi|13878674|sp|P95547|RADB_PYRKO RecName: Full=DNA repair and recombination protein radB
 gi|75766445|pdb|2CVF|A Chain A, Crystal Structure Of The Radb Recombinase
 gi|75766446|pdb|2CVF|B Chain B, Crystal Structure Of The Radb Recombinase
 gi|75766447|pdb|2CVH|A Chain A, Crystal Structure Of The Radb Recombinase
 gi|75766448|pdb|2CVH|B Chain B, Crystal Structure Of The Radb Recombinase
 gi|6009935|dbj|BAA11830.2| Pk-rec [Thermococcus kodakarensis KOD1]
 gi|57160490|dbj|BAD86420.1| RadB recombinase [Thermococcus kodakarensis KOD1]
          Length = 220

 Score = 71.0 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 86/233 (36%), Gaps = 33/233 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G+  LD  LG GGF  G + ++YGP +SGKTTLAL T   S   G   A+VD E   
Sbjct: 2   LSTGTKSLDSLLG-GGFAPGVLTQVYGPYASGKTTLALQTGLLS---GKKVAYVDTEGGF 57

Query: 108 DSIYARKLG--------VDLKNLLISQPDTGEQALEITDMLVRSGAVDI--IVIDSVAAL 157
                 ++           L   ++  P   ++   +   L ++   +   +V+DS+ A 
Sbjct: 58  SPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAH 117

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
               E    +           +S+ L+ L     +    ++ INQ+              
Sbjct: 118 YRAEENRSGL--------IAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEM---TKP 166

Query: 218 TGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
                L +     L +       DK    G +  V + +++         F I
Sbjct: 167 VAEQTLGYRCKDILRL-------DKLPKPGLRVAV-LERHRFRPEGLMAYFRI 211


>gi|15705847|gb|AAL05847.1| RecA [Burkholderia cepacia]
          Length = 85

 Score = 71.0 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/82 (56%), Positives = 54/82 (65%), Gaps = 2/82 (2%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLG-LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           +IM++G  G   E I+VVS+GSLG    A          +VEIYGPESSGKTTL L  IA
Sbjct: 1   SIMRMGD-GEAAEDIQVVSTGSLGSRHRAGASAACRAAGVVEIYGPESSGKTTLTLQVIA 59

Query: 90  QSQKTGGTCAFVDAEHALDSIY 111
           + QK GGT AF+DAEHALD  Y
Sbjct: 60  ELQKLGGTAAFIDAEHALDVQY 81


>gi|297696334|ref|XP_002825351.1| PREDICTED: DNA repair protein RAD51 homolog 1-like isoform 2 [Pongo
           abelii]
 gi|297696336|ref|XP_002825352.1| PREDICTED: DNA repair protein RAD51 homolog 1-like isoform 3 [Pongo
           abelii]
          Length = 340

 Score = 71.0 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 77/227 (33%), Gaps = 30/227 (13%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARK 114
            GG   G I E++G   +GKT +        Q         G   ++D E          
Sbjct: 115 TGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLA 174

Query: 115 L--------GVDLKNLLISQPDTGEQA---LEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           +           L N+  ++    +     L     ++      ++++DS  AL  R + 
Sbjct: 175 VAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALY-RTDY 233

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG---VMFGSPETTTGG 220
            G    S   M    +++ LR L          +V  NQ+  ++    +    P+   GG
Sbjct: 234 SGRGELSARQMH---LARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGG 290

Query: 221 NALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
           N +   S+ RL +R      R+  I D   +   +    +  + +  
Sbjct: 291 NIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGD 337


>gi|46810412|gb|AAT01606.1| RecA [Geobacter sulfurreducens]
          Length = 77

 Score = 71.0 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 58/77 (75%), Positives = 70/77 (90%)

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           +MLVRSGAVD++VIDSVAAL P+AEIEG+MG+S  G+QARLMSQALRKLT  IS+S C +
Sbjct: 1   EMLVRSGAVDVLVIDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLTGIISKSNCCV 60

Query: 198 VFINQMRMKIGVMFGSP 214
           +FINQ+RMKIGVMFG+P
Sbjct: 61  IFINQIRMKIGVMFGNP 77


>gi|20978627|sp|Q97B99|RADB_THEVO RecName: Full=DNA repair and recombination protein radB
 gi|14324773|dbj|BAB59700.1| cell cycle progression protein DMC2 [Thermoplasma volcanium GSS1]
          Length = 234

 Score = 71.0 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 91/242 (37%), Gaps = 21/242 (8%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           +  + S+ E IE +  G   +D  L  GG   G I EI+G   SGK+ + +     + + 
Sbjct: 1   MMEEISLQEKIEKLPLGVACID-GLTNGGLEAGIITEIFGEGGSGKSNVCMLAACSALRL 59

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD----IIV 150
           G    F+D+E      +      D   L + +  + +          +    D    + +
Sbjct: 60  GKKVVFIDSEGFSSERFLSICKADNSKLKVIRVFSLDDQEVAITKFSKIIEKDASYGLFI 119

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DS +    R E  GD    +         + L  L+S  ++ K  ++  NQ+   I   
Sbjct: 120 LDSFSEFF-RLERTGDNQSRVID-----FQRQLSLLSSIAAKRKIPVLITNQIYQDIAN- 172

Query: 211 FGSPETTTGGNALKFY--SSVRLD-----IRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
                   GG  +     +  RL+      R++  +K +    GN    ++V++ ++   
Sbjct: 173 --GDILPFGGYVVDHIMKAIYRLERLPDGRRKMTVMKHRSVKEGNSVEFRIVQDGISCEV 230

Query: 264 KQ 265
           K 
Sbjct: 231 KN 232


>gi|82595964|ref|XP_726066.1| DNA repair protein Rhp51 [Plasmodium yoelii yoelii str. 17XNL]
 gi|23481317|gb|EAA17631.1| DNA repair protein rhp51 [Plasmodium yoelii yoelii]
          Length = 365

 Score = 71.0 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 55/300 (18%), Positives = 100/300 (33%), Gaps = 50/300 (16%)

Query: 5   KEMNIVDKSKALEAALSQIQRV--YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
           K ++ V   K LE A S+I+    +  G   QL  + S    +  +++GS  LD  LG G
Sbjct: 70  KGISEVKVDKILEVA-SKIENCSAFITGN--QLVQKRS---KVLKITTGSSVLDKTLG-G 122

Query: 63  GFPKGRIVEIYGPESSGKTTLAL------HTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
           GF    I E++G    GKT +              Q   G   ++D E         K+ 
Sbjct: 123 GFESMSITELFGENRCGKTQVCHTLAVTAQLPKSMQGGNGKVCYIDTEGTFRPEKICKIA 182

Query: 117 --------VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM- 167
                     L N+L ++  T E   ++                    L   A +   + 
Sbjct: 183 QRFGLNSEDVLDNILYARAFTHEHLYQLLATSAAKVVHTPACALLTYTLLTYALLTYALL 242

Query: 168 -----------------GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
                            G      + + +++ +  L+    +    +V  NQ+    G  
Sbjct: 243 TYTLLTYLLHFCERYFSGRGELSERQQKLNKIMSVLSKLGEQFNIAIVITNQVMSDPGAT 302

Query: 211 FG---SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
                +P    GG+ +   S+ RL +R      RV  + D  ++   +   ++    +  
Sbjct: 303 MTFIANPMKPVGGHVIGHASTTRLSLRKGKGDQRVCKVYDAPNLPEIECIFQLSDGGVID 362


>gi|255633658|gb|ACU17188.1| unknown [Glycine max]
 gi|255646013|gb|ACU23494.1| unknown [Glycine max]
          Length = 76

 Score = 71.0 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%)

Query: 290 SIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349
            IV K G+W+ +   RLGQGR+ +  +L+EN  + E IE ++R +     +        N
Sbjct: 3   DIVSKKGSWYRYGDHRLGQGRDKAIQYLKENTHLLEEIEKVVRSSLIDGTNQTSPVHMKN 62

Query: 350 TKDDADKDD 358
           +      DD
Sbjct: 63  SSVLHQDDD 71


>gi|39939202|ref|NP_950968.1| hypothetical protein PAM_716 [Onion yellows phytoplasma OY-M]
 gi|39722311|dbj|BAD04801.1| hypothetical protein [Onion yellows phytoplasma OY-M]
          Length = 88

 Score = 70.6 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/88 (52%), Positives = 68/88 (77%)

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +V+DSVAAL P AE+ GDMG    G+QAR+M Q++RK +  I+++  ++++INQ+R K G
Sbjct: 1   MVVDSVAALVPEAELVGDMGNMAMGLQARMMGQSMRKQSGIINKTDTVVIYINQLREKTG 60

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRV 236
           ++F +PE T GG ALKF++S+RLDIRR 
Sbjct: 61  MVFCNPEVTQGGKALKFFASLRLDIRRS 88


>gi|115660760|ref|XP_791258.2| PREDICTED: similar to RecA homolog Dmc1 [Strongylocentrotus
           purpuratus]
 gi|115971203|ref|XP_001184102.1| PREDICTED: similar to RecA homolog Dmc1 [Strongylocentrotus
           purpuratus]
          Length = 1259

 Score = 70.6 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 85/231 (36%), Gaps = 41/231 (17%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSI--------FEGIEVVSSGS 52
           M  RK M  +   K +  A  +++++  K A  +L   G             +  +++GS
Sbjct: 85  MTTRKRMCDI---KGISEA--KMEKI--KEAASKLEDHGFTTALEYSVKRRNVFRITTGS 137

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHA 106
             LD  LG GG     I E +G   +GKT L+      +Q        GG   F+D E+ 
Sbjct: 138 TELDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVCTQLPGSNGYPGGKVIFIDTENT 196

Query: 107 LDSIYARKL--------GVDLKNLLISQPDTGEQALEITDMLVRSGA-----VDIIVIDS 153
                 R +        G  L N+L ++  T E   E+ D              +++IDS
Sbjct: 197 FRPDRLRDIADRFNLDHGAMLDNVLYARAYTSEHQFELLDYAAGKFHEEPGVFKLLIIDS 256

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           + AL          G      + + ++Q L KL      S      INQ  
Sbjct: 257 IMALFR----VDFTGRGELADRQQKLAQMLSKLQKISEESSLHP--INQQF 301


>gi|18313927|ref|NP_560594.1| DNA repair protein radA [Pyrobaculum aerophilum str. IM2]
 gi|18161497|gb|AAL64776.1| DNA repair protein radA [Pyrobaculum aerophilum str. IM2]
          Length = 311

 Score = 70.6 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 81/240 (33%), Gaps = 23/240 (9%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           K L+ AL ++      GA   L  +      ++   +G    D      G  +  I E  
Sbjct: 53  KLLQQALQRV------GAARPLTLREMRQRQVKAFKTGVAEFDEKTPWRGIREAFIYEFA 106

Query: 74  GPESSGKTTLALHTIAQSQKTGGT--CAFVDAEHALDSIYARKLGVDL--------KNLL 123
           G   +GK+ LA      + + G T    ++D E   +      +             ++ 
Sbjct: 107 GEFGAGKSMLAHQASVAALREGFTERVVYIDTEGTFNEALIEAVARRFELDVERIADSIY 166

Query: 124 ISQPDTGEQALEITDMLVRSGAVDII---VIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           + QP    Q  +I    V     +     VID++ AL  RAE  G    +    +   + 
Sbjct: 167 VYQPANVVQLEQIVKFDVPKHIQEGCRLLVIDTITALY-RAEFVGREYLATRQQRIHYLV 225

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
             LR+   +   +    V  NQ+     +     +   GGN L    + R  + R    K
Sbjct: 226 DWLRRHARTFGLT---TVLTNQVMDVPEIFAAGVKRPAGGNVLAHAVNARFMMVRPNKTK 282


>gi|67541116|ref|XP_664332.1| hypothetical protein AN6728.2 [Aspergillus nidulans FGSC A4]
 gi|40739356|gb|EAA58546.1| hypothetical protein AN6728.2 [Aspergillus nidulans FGSC A4]
 gi|259480319|tpe|CBF71341.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
          Length = 366

 Score = 70.6 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 96/265 (36%), Gaps = 45/265 (16%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALG-----------IGGFPKGRIVEIYGPESSGKTTLALH 86
           Q S    +  + +G   LD A+              G P+G++ E++GP   GKT+LAL+
Sbjct: 27  QASAALSVGAIPTGITQLDNAISPLPAEQDDDADSRGIPQGQVTEVFGPPGVGKTSLALN 86

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIY--------------ARKLGVDLKNLLISQPDTGEQ 132
             + +   GG   ++D    L  +                +     ++NL   +  +   
Sbjct: 87  VASNALLAGGKVVWIDTGSPLPRLRLRDVLQKSIEVSKSPQTAEQLVQNLTHIRAQSLPH 146

Query: 133 ALEITDML---VRSGAVDIIVIDSVAALTPR-----AEIEGDMGES----------LPGM 174
            L +              ++V+DS +           E++  +G+S          L   
Sbjct: 147 ILALLLHPPSTFPPQDCRLLVVDSASGPFASYFPNPTELKARLGQSKNIDKAQVQWLMNR 206

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT-GGNALKFYSSVRLDI 233
            + + S    +L    +  +  ++ INQ R +I     +       G A +   S RL +
Sbjct: 207 SSNVTSDLANQLMKLATTHRMAVLAINQTRTRIKGQPRATLCPVLAGGAWESSISTRLVL 266

Query: 234 RRVGSIKDKDSITGNQTRVKVVKNK 258
            R   +  ++++ G +    + ++ 
Sbjct: 267 YR-DLLTTENTVEGIRCAEVMKRSG 290


>gi|13541390|ref|NP_111078.1| DNA repair and recombination protein RadB [Thermoplasma volcanium
           GSS1]
          Length = 233

 Score = 70.6 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 90/240 (37%), Gaps = 21/240 (8%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
            + S+ E IE +  G   +D  L  GG   G I EI+G   SGK+ + +     + + G 
Sbjct: 2   EEISLQEKIEKLPLGVACID-GLTNGGLEAGIITEIFGEGGSGKSNVCMLAACSALRLGK 60

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD----IIVID 152
              F+D+E      +      D   L + +  + +          +    D    + ++D
Sbjct: 61  KVVFIDSEGFSSERFLSICKADNSKLKVIRVFSLDDQEVAITKFSKIIEKDASYGLFILD 120

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           S +    R E  GD    +         + L  L+S  ++ K  ++  NQ+   I     
Sbjct: 121 SFSEFF-RLERTGDNQSRVID-----FQRQLSLLSSIAAKRKIPVLITNQIYQDIAN--- 171

Query: 213 SPETTTGGNALKFY--SSVRLD-----IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
                 GG  +     +  RL+      R++  +K +    GN    ++V++ ++   K 
Sbjct: 172 GDILPFGGYVVDHIMKAIYRLERLPDGRRKMTVMKHRSVKEGNSVEFRIVQDGISCEVKN 231


>gi|169766094|ref|XP_001817518.1| hypothetical protein AOR_1_794174 [Aspergillus oryzae RIB40]
 gi|83765373|dbj|BAE55516.1| unnamed protein product [Aspergillus oryzae]
          Length = 375

 Score = 70.6 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 96/301 (31%), Gaps = 69/301 (22%)

Query: 39  GSIFEGIEVVSSGSLGLDIAL---------------GIGGFPKGRIVEIYGPESSGKTTL 83
            S       +S+G   LD A+                  G P G + E+YGP  +GKT+L
Sbjct: 28  ASAASPSGAISTGIPQLDEAIRPPSAEDVLGRTRDINSNGIPCGHVTEVYGPPGAGKTSL 87

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKL-------------GVDLKNLLISQPDTG 130
           AL     + + G    ++D    L  +    +                +KNL+     + 
Sbjct: 88  ALSVATSALRNGDKVIWIDTGSPLPKVRLASMLKKSPDATSSDLPEDPIKNLIYFHARSL 147

Query: 131 EQALEIT---DMLVRSGAVDIIVIDSVAALT--------------PRAEIEGDMG-ESLP 172
              L +              ++VIDSV+ L               P++ I   M  + L 
Sbjct: 148 PHLLALLIRPPKGFPPEDAKLLVIDSVSGLFPSYFPNPSEFKSRLPQSGITDKMQIQWLM 207

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT-GGNALKFYSSVRL 231
             +  + S    +L    +     ++ +NQ   +I     +       G   +    VR+
Sbjct: 208 NRKWNVTSDLGNQLVKLAATHGLAILLVNQTHTRIRGQPRATLCPVLAGGTWENSVHVRI 267

Query: 232 DIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASI 291
            I R    +D+    G                      + + E +   G+ + L +  +I
Sbjct: 268 AIFRDFLPEDEGDSKG----------------------VHFAEVMKRAGKTLSLRLDENI 305

Query: 292 V 292
           V
Sbjct: 306 V 306


>gi|171186083|ref|YP_001795002.1| Rad51 domain-containing protein [Thermoproteus neutrophilus V24Sta]
 gi|170935295|gb|ACB40556.1| Rad51 domain protein [Thermoproteus neutrophilus V24Sta]
          Length = 307

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 70/207 (33%), Gaps = 17/207 (8%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT--CAFVDAE 104
           V  +G    D     GG  +G I E  G   +GK+  A        + G T    ++D E
Sbjct: 76  VFKTGLGSFDGGTPWGGIREGFIYEFAGEYGTGKSMFAHQLAVAGVREGFTERVVYIDTE 135

Query: 105 HALDSIYARKLGVDL--------KNLLISQPDTGEQALEITDMLVRSGAVDII---VIDS 153
                  A  +              +++ QP    Q  +I    +     +     ++D+
Sbjct: 136 GTFSPTLAEAIARRFGVEIERLDSAVVVYQPANATQLEQIVKFEIPRHIGEGCRLVIVDT 195

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           + AL  RAE  G    +    +   +   LR+   +   +    V  NQ+     +  G 
Sbjct: 196 ITALY-RAEFPGREMLAARQQRIHYLVDWLRRHARTFGVTS---VLTNQVMDVPEIFAGG 251

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIK 240
            +   GGN L    + R  + R    K
Sbjct: 252 VKRPAGGNVLAHAVNARFMMARPNKAK 278


>gi|38602347|emb|CAD58029.1| recombinase A [Gluconacetobacter diazotrophicus]
          Length = 76

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 54/76 (71%), Positives = 69/76 (90%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           VRSGA+D++V+DSVAAL PRAE+EGDMG+S  G+ ARLMSQALRKLT ++SRS  +++F+
Sbjct: 1   VRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGTVSRSNTMMIFL 60

Query: 201 NQMRMKIGVMFGSPET 216
           NQ+R+KIGVMFGSPET
Sbjct: 61  NQIRLKIGVMFGSPET 76


>gi|110669303|ref|YP_659114.1| DNA repair and recombination protein RadA [Haloquadratum walsbyi
           DSM 16790]
 gi|121692072|sp|Q18EU1|RADA_HALWD RecName: Full=DNA repair and recombination protein radA
 gi|109627050|emb|CAJ53526.1| DNA repair and recombination protein RadA [Haloquadratum walsbyi
           DSM 16790]
          Length = 343

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 86/273 (31%), Gaps = 57/273 (20%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTG 95
            E I  +S     +D  LG GG     I E+YG   +GK+ +        Q        G
Sbjct: 76  REEIGKLSWKIPEVDELLG-GGIETQSITEVYGEFGAGKSQVTHQMAVNVQLPPEHGGLG 134

Query: 96  GTCAFVDAEHALDSIYARK--------------------------------LGVDLKNLL 123
           G   FVD+E                                          L   L ++ 
Sbjct: 135 GAAIFVDSEDTFRPERIDDMLRGLDDEIITDLLERREIEGTPGDDETMKALLDSFLDHIH 194

Query: 124 ISQPDTGEQALEITDM--------LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           +++       + + +               V ++ +DS+ A   RAE  G         +
Sbjct: 195 VAKAFNSNHQILLAEKAKELARDNQDSGFPVRLLCVDSLTAHF-RAEYVGR---GSLAER 250

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
            + +++ L  L          ++  NQ+       FG P    GGN L   S+ R+ +R+
Sbjct: 251 QQKLNKHLHDLMRIGDLYNTAVLVTNQVASNPDSYFGDPTQPIGGNILGHTSTFRMYLRK 310

Query: 236 VGSIK------DKDSITGNQTRVKVVKNKMASP 262
             + K      D  ++   +  ++V    +   
Sbjct: 311 SKNDKRIVRLVDAPNLADGEAVMRVKDAGLKPE 343


>gi|108763253|ref|YP_632171.1| putative RecA protein [Myxococcus xanthus DK 1622]
 gi|108467133|gb|ABF92318.1| putative recA protein [Myxococcus xanthus DK 1622]
          Length = 290

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 74/138 (53%), Gaps = 6/138 (4%)

Query: 28  GKGAIM-QLGS-----QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           G G+++ QL       Q +    + V+ +G   +D  L  GG P G++VE+ G  +SG+T
Sbjct: 13  GTGSVVEQLRERIRQLQAAPRRYLAVLRTGLSAVDALLPTGGLPLGQVVELCGEAASGRT 72

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           +LALH +A + +    CA+VD    L S  A  LGVDL+ LLI +P   EQ +     L 
Sbjct: 73  SLALHAVAAAHQEARLCAWVDGPRELYSPSAAALGVDLERLLIVRPQASEQRIWAAVQLA 132

Query: 142 RSGAVDIIVIDSVAALTP 159
           RSGA   +V+D    + P
Sbjct: 133 RSGAFACVVLDLTRGMNP 150


>gi|307354038|ref|YP_003895089.1| DNA repair and recombination protein RadB [Methanoplanus
           petrolearius DSM 11571]
 gi|307157271|gb|ADN36651.1| DNA repair and recombination protein RadB [Methanoplanus
           petrolearius DSM 11571]
          Length = 226

 Score = 69.9 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 50/199 (25%), Positives = 87/199 (43%), Gaps = 19/199 (9%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + +++GS   D  +G GG  K  I ++YG  +SGK+T+ L T  +  K G    ++D E 
Sbjct: 4   DKINTGSPEFDDLIG-GGLEKKMITQVYGEPASGKSTICLMTAIEQLKAGKKVIYIDTEG 62

Query: 106 ALDSIYARKLGVD-----LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAAL 157
                + +  G D        ++    D   Q L I     +L     + +IV+DS  AL
Sbjct: 63  FSVERFRQIAGEDNQTLAEDLIIFEPVDFDLQGLMIGECDKLLKTETDIGLIVLDSATAL 122

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
             R E  G  GES   + ++++     +L     R    ++  NQ+ M I     +  + 
Sbjct: 123 Y-RVE-GGRSGESQRKLGSQMI-----RLLGFARRYDIPVLVSNQVFMDID---QNAVSG 172

Query: 218 TGGNALKFYSSVRLDIRRV 236
            GG +L+  S V + + + 
Sbjct: 173 LGGTSLRHISKVIIRLEKK 191


>gi|332158291|ref|YP_004423570.1| DNA repair and recombination protein RadB [Pyrococcus sp. NA2]
 gi|331033754|gb|AEC51566.1| DNA repair and recombination protein RadB [Pyrococcus sp. NA2]
          Length = 224

 Score = 69.5 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 92/233 (39%), Gaps = 36/233 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +++G  GLD  LG GG  KG I+++YGP ++GKTT A+     ++   G  A+VD E   
Sbjct: 4   LTTGVRGLDELLG-GGVAKGVILQVYGPFATGKTTFAMQVGLLNE---GKIAYVDTEGGF 59

Query: 108 DSIYARKLG--------VDLKNLLISQPDTGEQALEITD--MLVRSGAVDIIVIDSVAAL 157
                 ++           L   +I +P    +   +      + +    ++VIDS+ A 
Sbjct: 60  SPERLAQMAEARGIDPEKALSKFIIFEPMDLNEQRRVISKLKTIVNDKFSLVVIDSLTAH 119

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
             RAE   D GE         +++ L+ L     R    ++ +NQ+         +    
Sbjct: 120 Y-RAEGSKDYGE---------LAKQLQVLQWLARRKNVAVIVVNQVYFDSNS---NSLRP 166

Query: 218 TGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
              + L + +   L   R+          G +  V + +++       V F I
Sbjct: 167 IAEHTLGYRTKDILRFERLR--------VGIRIAV-LERHRFKPEGGIVYFRI 210


>gi|154280987|ref|XP_001541306.1| DNA repair protein RAD51 [Ajellomyces capsulatus NAm1]
 gi|150411485|gb|EDN06873.1| DNA repair protein RAD51 [Ajellomyces capsulatus NAm1]
          Length = 297

 Score = 69.5 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 76/237 (32%), Gaps = 51/237 (21%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAE 104
           GS  LD  L  GG   G I EI+G   +GK+ +        Q         G C ++D E
Sbjct: 79  GSKQLDTLLA-GGIETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTE 137

Query: 105 HALDSIYARKL--------GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
                     +           L N+  ++    +  L++ +   +              
Sbjct: 138 GTFRPTRLLAVAQRYGLVGDEVLDNIAYARAYNSDHQLQLLNQASQMMCE---------- 187

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG-----VMF 211
                             +   +++ +RKL +        +V  NQ+  ++      +  
Sbjct: 188 ---------------LSSRQNHLAKFMRKLRTLADEFGIAVVITNQVVAQVDGGPSAMFN 232

Query: 212 GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMASP 262
             P+   GGN +   S+ RL ++      R+  I D   +  +     + +  +  P
Sbjct: 233 PDPKKPIGGNIIAHASTTRLSLKKGRGETRICKIYDSPCLPESDCLFAINEGGIGDP 289


>gi|134046023|ref|YP_001097509.1| DNA repair and recombination protein RadB [Methanococcus
           maripaludis C5]
 gi|166218767|sp|A4FYL0|RADB_METM5 RecName: Full=DNA repair and recombination protein radB
 gi|132663648|gb|ABO35294.1| DNA repair and recombination protein RadB [Methanococcus
           maripaludis C5]
          Length = 216

 Score = 69.5 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 96/212 (45%), Gaps = 19/212 (8%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           L  G   K  I +IYGP   GKT + + ++ ++ + G    ++D E +L     ++L   
Sbjct: 5   LLNGNIEKKTITQIYGPPGVGKTNICILSMLKAIENGKNVVYIDTEGSLSIERIKQLSEQ 64

Query: 119 -----LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
                LK+++I +P + E+  E  + +     + +IVID + +L  R E+  ++ E+   
Sbjct: 65  DSDELLKSIIIYEPSSFEEQSEALEKIFFLENIGLIVIDGIVSLY-RLELCDNINENT-- 121

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
              R++ + +  L          ++  NQ++  I  +        GG  L+++S   + +
Sbjct: 122 KLNRMLGKQISNLLKVARMKNSGILITNQVKDSINGI-----EPAGGRLLEYWSKSIIKL 176

Query: 234 RRVGSI------KDKDSITGNQTRVKVVKNKM 259
            +  SI      K + +  G   R ++V+N +
Sbjct: 177 EKTESIRKLTLEKHRHAKEGENLRFRIVQNGL 208


>gi|324517282|gb|ADY46774.1| DNA repair protein RAD51 3 [Ascaris suum]
          Length = 266

 Score = 69.1 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 70/210 (33%), Gaps = 28/210 (13%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ--KTGGTCAFVDA 103
           E++S+G + LD  LG GG   G  +EI G  S+GK+ L +      Q  K    C +VD 
Sbjct: 29  EILSTGVIQLDTLLG-GGITAGTFLEIVGLSSAGKSQLCMQLAVNVQKHKRRNECVYVDT 87

Query: 104 E-------------HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           E               L S Y       + +            L   D L+       ++
Sbjct: 88  EGGFSTKRICDIAMRCLPSEYVASCLQRIHHCRCHDAVQLTSTLHRLDTLISQNPKIGLI 147

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM---RMKI 207
           I    A+  R EI   M          ++      L+S     +C+++ +N +       
Sbjct: 148 IVDSVAMPLRGEI-DHM--------RHMIMDFSCLLSSLAVSCRCVVIVVNHVAFRFRND 198

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
                    +  G +     + RL +    
Sbjct: 199 EDSESGYLASALGTSWSHRPTSRLWMCPAE 228


>gi|167423031|ref|ZP_02314784.1| recombinase [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167427214|ref|ZP_02318967.1| recombinase [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|166957055|gb|EDR55076.1| recombinase [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167053780|gb|EDR63621.1| recombinase [Yersinia pestis biovar Mediaevalis str. K1973002]
          Length = 133

 Score = 69.1 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 18/134 (13%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRI 69
             AL  AL +           ++GS   I +    + SG   L+ A+     GGFP GRI
Sbjct: 5   KSALALALKK-----------KIGSNDEIQKVSHWIDSGFPPLNKAISGRYDGGFPCGRI 53

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK----NLLIS 125
           VE++GP S+GKT LA   +  +QK  G   F+D E++ D   A   G++        +  
Sbjct: 54  VEVFGPPSAGKTFLATAAMVSAQKQDGLAVFLDHENSFDVGLAVANGLNADEDDGQWVYK 113

Query: 126 QPDTGEQALEITDM 139
           QPDT E ++E+   
Sbjct: 114 QPDTFEDSVELIGT 127


>gi|167427197|ref|ZP_02318950.1| recombinase [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167053802|gb|EDR63638.1| recombinase [Yersinia pestis biovar Mediaevalis str. K1973002]
          Length = 200

 Score = 68.7 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 3/139 (2%)

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
           A+ +  +  +     AR  S     L     +    ++F+NQ+R KIGVMFG P T+ GG
Sbjct: 13  AKDKDQLNMNDNTALARATSANFPTLALWARKYNACIIFLNQVRTKIGVMFGDPTTSPGG 72

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG--EGISF 278
           ++ KFY+SVR+ +     +KD     G     + +KNK+A PF +  +   +    G+  
Sbjct: 73  DSPKFYASVRIRL-GASVMKDGKEKIGQDVGAECIKNKVAPPFGKCSWKFYFDPTRGLDV 131

Query: 279 FGELIDLGVKASIVDKSGA 297
              L++  ++   + K+ +
Sbjct: 132 IESLVEYMLEEGYLPKNAS 150


>gi|307594299|ref|YP_003900616.1| Rad51 domain-containing protein [Vulcanisaeta distributa DSM 14429]
 gi|307549500|gb|ADN49565.1| Rad51 domain protein [Vulcanisaeta distributa DSM 14429]
          Length = 327

 Score = 68.7 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 97/254 (38%), Gaps = 36/254 (14%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH-TIAQSQKTG 95
            +        ++ +G  GLD A  +GG   G   E  G   +GKT +AL   +A   + G
Sbjct: 84  ERIEALSKAPILKTGVDGLDSA--VGGLRFGVSHEFAGEFGAGKTIMALQAAVASIGQFG 141

Query: 96  GTCAFVDAEHA--------LDSIYARKLGVDLKN-----LLISQPDTGEQALE----ITD 138
               ++D E          L      + GVD +      LLI  P T +   +       
Sbjct: 142 FRVVYIDTEKTVDQYLGSNLIKNMCSRFGVDYEKVINDYLLIYNPATVDDLEDFIKLRLA 201

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            LV S    +I++DS+ AL  RA+  G    +    +   +   LR+L+    R+  ++V
Sbjct: 202 DLVLSNNARVIIVDSITALY-RAQFRGRERLAERQQRLHYVLDWLRRLS---IRAGVLVV 257

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           + NQ+       F   +   GGN L    + R  + R    K       N+  +K +   
Sbjct: 258 YTNQVMTSP-TGFIEVKLPVGGNVLAHTVNARWLMTRASKAK-------NEGVMKALDVP 309

Query: 259 MASPFKQVEFDIMY 272
              P     F+I Y
Sbjct: 310 GLPPG----FEIRY 319


>gi|47717781|gb|AAT37933.1| recombinase A [Borrelia japonica]
 gi|47717783|gb|AAT37934.1| recombinase A [Borrelia japonica]
          Length = 53

 Score = 67.9 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/53 (73%), Positives = 45/53 (84%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           IGG+P+GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD IYAR
Sbjct: 1   IGGYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPIYAR 53


>gi|300709641|ref|YP_003735455.1| DNA repair and recombination protein RadA [Halalkalicoccus jeotgali
           B3]
 gi|299123324|gb|ADJ13663.1| DNA repair and recombination protein RadA [Halalkalicoccus jeotgali
           B3]
          Length = 344

 Score = 67.9 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 83/265 (31%), Gaps = 60/265 (22%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
              E I  +S     +D  LG GG     I E+YG   +GK+ +        Q       
Sbjct: 75  ERRERIGKLSWQIPEVDEMLG-GGVETQSITEVYGEFGAGKSQVTHQLAVNVQLPREQGG 133

Query: 94  TGGTCAFVDAEHALDSIYARKL--------------------------------GVDLKN 121
             G+  F+D+E          +                                   L  
Sbjct: 134 LEGSAIFIDSEDTFRPERIDDMVRGLEDDVIAATLEHREIEGGPNDEAALDVLVEDVLDK 193

Query: 122 LLISQPDTGEQALEITDM--------LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
           + +++       + + +               V ++ +DS+ A   RAE  G        
Sbjct: 194 IHVAKAFNSNHQMLLAEKAKELAGESEDTEWPVRLVCVDSLTAHF-RAEYVGR---GQLA 249

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
            + + +++ L  L+         ++  NQ+       FG P    GGN L   S+ R+ +
Sbjct: 250 ERQQKLNKHLHDLSRIADLYNTAILVTNQVASNPDSFFGDPTQPIGGNILGHKSTFRMYL 309

Query: 234 RRVGSIKDKDSITGNQTRVKVVKNK 258
           R+           GN+  V++V   
Sbjct: 310 RKSK---------GNKRIVRLVDAP 325


>gi|47717761|gb|AAT37923.1| recombinase A [Borrelia garinii]
          Length = 53

 Score = 67.9 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/53 (67%), Positives = 45/53 (84%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           IGG+P+GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHAL+ +YA+
Sbjct: 1   IGGYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALNPVYAK 53


>gi|47717747|gb|AAT37916.1| recombinase A [Borrelia garinii]
 gi|47717749|gb|AAT37917.1| recombinase A [Borrelia garinii]
          Length = 53

 Score = 67.9 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/53 (69%), Positives = 45/53 (84%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           IGG+P+GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   IGGYPRGRIIEIFGPESSGKTTLTLQAIAEVQKKGGIAAFIDAEHALDPVYAK 53


>gi|33087865|gb|AAP93063.1| recombination protein A [Yersinia mollaretii]
          Length = 76

 Score = 67.9 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 58/76 (76%), Positives = 67/76 (88%)

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD
Sbjct: 1   IAAAQRAGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 60

Query: 148 IIVIDSVAALTPRAEI 163
           +I++DSVAALTP+AEI
Sbjct: 61  VIIVDSVAALTPKAEI 76


>gi|294948363|ref|XP_002785713.1| meiotic recombination protein DMC1, putative [Perkinsus marinus
           ATCC 50983]
 gi|239899761|gb|EER17509.1| meiotic recombination protein DMC1, putative [Perkinsus marinus
           ATCC 50983]
          Length = 259

 Score = 67.9 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 72/216 (33%), Gaps = 25/216 (11%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + VS+G   LD  L  GG P  ++VE+YGP  SGKT + +          G   + D+E 
Sbjct: 12  QYVSTGMPSLDAFL-RGGLPVAQLVELYGPAGSGKTQVLMSIAVAVLAGEGRVFWFDSER 70

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQAL--------------EITDMLVRSGAVDIIVI 151
            L     + L          +      A+               +  +    G   ++VI
Sbjct: 71  TLHPERFQSLCERRSPHAPIEGMLSRMAIKECDDLLDLIRGVEALKTIPTCEGVPCLVVI 130

Query: 152 DSVAALTPRAE---IEGDMGESLPGMQARLMSQALRKLTSSISR-------SKCILVFIN 201
           DSVAA     E   +    G+   G  A ++++    L              +  +V  N
Sbjct: 131 DSVAAAARCTEDIILSRMQGDKSEGSDAAVLAERQSLLNRLAVALKGAAWVQRAAVVVSN 190

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
            +                G       +VRL I RV 
Sbjct: 191 HVTADFDSNQSDAFKPALGLTWSHAVNVRLMINRVE 226


>gi|150400720|ref|YP_001324486.1| DNA repair and recombination protein RadB [Methanococcus aeolicus
           Nankai-3]
 gi|150013423|gb|ABR55874.1| DNA repair and recombination protein RadB [Methanococcus aeolicus
           Nankai-3]
          Length = 213

 Score = 67.9 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 94/211 (44%), Gaps = 21/211 (9%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD--- 118
           G   +  I +IYGP   GKT L + +     + G   A++D E  L +   +++  +   
Sbjct: 8   GDIERKTITQIYGPPGVGKTNLCIISAINFIRHGYKVAYIDTEGGLSTERIKQISNNNEE 67

Query: 119 ----LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
               L NL+I +P++ E+   I   L     + +I++D +A+L  R E+  D+ ++    
Sbjct: 68  FNNILNNLIIYEPESFEEQSTILKQLALIDNLGLIIVDGIASLY-RLELSDDINQN--AK 124

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
             R+M   +  L     ++   ++  NQ+              +GG  L+++S + + I 
Sbjct: 125 VNRIMGNQILILNKISKKNNSAVLITNQI-----TDTNKGFKASGGKILEYWSKIIIRID 179

Query: 235 RVGSI------KDKDSITGNQTRVKVVKNKM 259
           +  +I      K + +  G + R K+V N +
Sbjct: 180 KPNTIREMTLEKHRHAAEGQKLRYKIVNNGV 210


>gi|299889|gb|AAB26404.1| RecA [Pseudomonas stutzeri]
          Length = 47

 Score = 67.9 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 33/46 (71%), Gaps = 2/46 (4%)

Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLD 56
          +K +AL AAL QI++ +GKGA+M++G      + I  +S+GSLGLD
Sbjct: 4  NKKRALAAALGQIEKQFGKGAVMRMGDHDR--QAIPSISTGSLGLD 47


>gi|15723736|gb|AAL05429.1| recA protein [Borrelia garinii]
 gi|18448950|gb|AAL69972.1| recombinase A [Borrelia afzelii]
 gi|47717731|gb|AAT37908.1| recombinase A [Borrelia burgdorferi]
 gi|47717733|gb|AAT37909.1| recombinase A [Borrelia burgdorferi]
 gi|47717735|gb|AAT37910.1| recombinase A [Borrelia burgdorferi]
 gi|47717737|gb|AAT37911.1| recombinase A [Borrelia burgdorferi]
 gi|47717739|gb|AAT37912.1| recombinase A [Borrelia burgdorferi]
 gi|47717741|gb|AAT37913.1| recombinase A [Borrelia burgdorferi]
 gi|47717743|gb|AAT37914.1| recombinase A [Borrelia burgdorferi]
 gi|47717745|gb|AAT37915.1| recombinase A [Borrelia burgdorferi]
 gi|47717751|gb|AAT37918.1| recombinase A [Borrelia garinii]
 gi|47717753|gb|AAT37919.1| recombinase A [Borrelia garinii]
 gi|47717755|gb|AAT37920.1| recombinase A [Borrelia garinii]
 gi|47717759|gb|AAT37922.1| recombinase A [Borrelia garinii]
 gi|47717763|gb|AAT37924.1| recombinase A [Borrelia lusitaniae]
 gi|47717765|gb|AAT37925.1| recombinase A [Borrelia valaisiana VS116]
 gi|47717767|gb|AAT37926.1| recombinase A [Borrelia valaisiana]
 gi|47717769|gb|AAT37927.1| recombinase A [Borrelia burgdorferi]
 gi|47717771|gb|AAT37928.1| recombinase A [Borrelia afzelii]
 gi|47717773|gb|AAT37929.1| recombinase A [Borrelia afzelii]
 gi|47717775|gb|AAT37930.1| recombinase A [Borrelia afzelii]
 gi|47717777|gb|AAT37931.1| recombinase A [Borrelia afzelii]
 gi|47717779|gb|AAT37932.1| recombinase A [Borrelia afzelii]
 gi|47717791|gb|AAT37938.1| recombinase A [Borrelia andersonii]
 gi|47717793|gb|AAT37939.1| recombinase A [Borrelia lusitaniae]
 gi|47717795|gb|AAT37940.1| recombinase A [Borrelia lusitaniae]
 gi|73762256|gb|AAZ83616.1| RecA [Borrelia afzelii]
 gi|73762258|gb|AAZ83617.1| RecA [Borrelia spielmanii]
 gi|73762260|gb|AAZ83618.1| RecA [Borrelia burgdorferi]
 gi|73762262|gb|AAZ83619.1| RecA [Borrelia garinii]
 gi|89145568|gb|ABD61980.1| RecA [Borrelia burgdorferi 297]
 gi|89145570|gb|ABD61981.1| RecA [Borrelia burgdorferi]
 gi|89145572|gb|ABD61982.1| RecA [Borrelia burgdorferi]
 gi|89145574|gb|ABD61983.1| RecA [Borrelia burgdorferi]
 gi|89145576|gb|ABD61984.1| RecA [Borrelia burgdorferi]
 gi|89145578|gb|ABD61985.1| RecA [Borrelia burgdorferi]
 gi|89145580|gb|ABD61986.1| RecA [Borrelia burgdorferi]
 gi|89145582|gb|ABD61987.1| RecA [Borrelia andersonii]
 gi|89145584|gb|ABD61988.1| RecA [Borrelia andersonii]
 gi|89145588|gb|ABD61990.1| RecA [Borrelia californiensis]
 gi|89145592|gb|ABD61992.1| RecA [Borrelia californiensis]
 gi|89145594|gb|ABD61993.1| RecA [Borrelia genomosp. 1]
 gi|89145596|gb|ABD61994.1| RecA [Borrelia genomosp. 1]
 gi|89145598|gb|ABD61995.1| RecA [Borrelia genomosp. 2]
 gi|89145600|gb|ABD61996.1| RecA [Borrelia valaisiana]
 gi|89145602|gb|ABD61997.1| RecA [Borrelia valaisiana]
          Length = 53

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/53 (69%), Positives = 45/53 (84%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           IGG+P+GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   IGGYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAK 53


>gi|303315825|ref|XP_003067917.1| meiotic recombination protein DLH1, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240107593|gb|EER25772.1| meiotic recombination protein DLH1, putative [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 309

 Score = 67.6 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 82/229 (35%), Gaps = 31/229 (13%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYA---- 112
           GF    I E+YG    GKT L+      +Q         G  A++D E            
Sbjct: 84  GFQSMSISEVYGEFRCGKTQLSHTMSVVAQLPRSMGGAEGKVAYIDTEGTFRPERVGQIA 143

Query: 113 RKLGVD----LKNLLISQPDTGEQALEITDMLVRSG---AVDIIVIDSVAALTPRAEIEG 165
            + GVD    L+N+  ++    E  LE+ + L +        +++IDS+     R +  G
Sbjct: 144 ERFGVDPDSSLENIAYARALNSEHQLELLNTLSKEFAGGEYRLLIIDSIMNCF-RVDYCG 202

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM----FGSPETTTGGN 221
                    + + ++Q L KL          ++  NQ++   G              GG+
Sbjct: 203 RGE---LADRQQKLNQFLMKLAHMAEEFNVCVLMTNQVQSDPGASALFAGADGRKPVGGH 259

Query: 222 ALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
            L   S+ R+ +R      RV  I+D       +    +    +  P K
Sbjct: 260 ILAHASTTRVLLRKGRGEERVAKIQDSPDCPEREATYIITNGGINDPEK 308


>gi|45358180|ref|NP_987737.1| DNA repair and recombination protein RadB [Methanococcus
           maripaludis S2]
 gi|6225910|sp|O50248|RADB_METMP RecName: Full=DNA repair and recombination protein radB
 gi|2665476|gb|AAB88382.1| DNA repair protein [Methanococcus maripaludis]
 gi|44920937|emb|CAF30173.1| DNA repair and recombination protein radB [Methanococcus
           maripaludis S2]
          Length = 216

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/212 (22%), Positives = 96/212 (45%), Gaps = 19/212 (8%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           L  G   K  I +IYGP   GKT + + ++ ++ + G    ++D E +L     ++L   
Sbjct: 5   LLNGNIEKKTITQIYGPPGVGKTNICIISMLKAIENGKNVVYIDTEGSLSIERIKQLSGK 64

Query: 119 -----LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
                LKN++I +P + E+  E  + +     V +I+ID + +L  R E+   + E+   
Sbjct: 65  DCDELLKNIIIYEPSSFEEQSEALEKIFLLENVGLIIIDGIVSLY-RLELCDKINENT-- 121

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
              R++ + +  L     +    ++  NQ++  I  +        GG  L+++S   + I
Sbjct: 122 KLNRMLGKQISNLLKVSRQKNSGILITNQVKDSINGI-----EPAGGRLLEYWSKSIIKI 176

Query: 234 RRVGSI------KDKDSITGNQTRVKVVKNKM 259
            +  SI      K + +  G   R K+++N +
Sbjct: 177 EKSESIRKLTLEKHRHAKEGENLRFKILQNGL 208


>gi|47717785|gb|AAT37935.1| recombinase A [Borrelia bissettii]
 gi|47717787|gb|AAT37936.1| recombinase A [Borrelia bissettii]
 gi|47717789|gb|AAT37937.1| recombinase A [Borrelia bissettii]
          Length = 53

 Score = 67.2 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/53 (67%), Positives = 45/53 (84%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           IGG+P+GR++EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   IGGYPRGRVIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAK 53


>gi|224142257|ref|XP_002324475.1| predicted protein [Populus trichocarpa]
 gi|222865909|gb|EEF03040.1| predicted protein [Populus trichocarpa]
          Length = 290

 Score = 67.2 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 82/216 (37%), Gaps = 32/216 (14%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGGTCA- 99
            +E  S G   LD  +G GG P   I EI     SGKT L L    ++Q     GG  A 
Sbjct: 8   PVEKCSLGCPILDCCMG-GGIPCNSITEIVAESGSGKTQLCLQLSLRAQLPPFLGGLSAS 66

Query: 100 --FVDAEHALDSIYARKLGVDL---------------KNLLISQPDTGEQALEITDMLV- 141
             ++  E    +    +L   L                ++ +   +T +Q L+I   +  
Sbjct: 67  SLYLYTEFPFPTRRLHQLSSALQCQYPQIFVSNYDPCDSIFLQSVNTADQLLDIMPQVES 126

Query: 142 ------RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
                     V +IVIDS+AAL  RAE E    +     ++ L  +   KL     R   
Sbjct: 127 FLENSKTRLPVRVIVIDSMAALF-RAEFENTASD--LIRRSSLFFKISGKLKEFAKRFNL 183

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
           +++  NQ+   +    G  E   G  +  + S  R+
Sbjct: 184 VVLVTNQVMDVVDSGEGLNEVRIGNLSGMYSSGRRV 219


>gi|474417|emb|CAA52977.1| recA [Corynebacterium glutamicum]
          Length = 83

 Score = 67.2 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 62/83 (74%), Positives = 71/83 (85%)

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
           KLGVD   LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAALTP+AEIEG+MG+S  G
Sbjct: 1   KLGVDTDALLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALTPKAEIEGEMGDSHVG 60

Query: 174 MQARLMSQALRKLTSSISRSKCI 196
           +QARLMSQALRK+T ++  S   
Sbjct: 61  LQARLMSQALRKMTGALYNSGTT 83


>gi|55379507|ref|YP_137357.1| DNA repair and recombination protein RadA [Haloarcula marismortui
           ATCC 43049]
 gi|55232232|gb|AAV47651.1| DNA repair and recombination protein RadA [Haloarcula marismortui
           ATCC 43049]
          Length = 351

 Score = 67.2 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 80/272 (29%), Gaps = 63/272 (23%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG---- 95
              E I  +S G   +D  LG GG     I E+YG   +GK+ +        Q       
Sbjct: 77  ERREQIGKLSWGVDEVDDLLG-GGVETQSITEVYGEFGAGKSQVTHQLAVNVQLPAEHGG 135

Query: 96  --GTCAFVDAEHALDSIYARKL-------------------------------------G 116
             G+  FVD+E         ++                                      
Sbjct: 136 LEGSAIFVDSEDTFRPERIEQMVKGLADEVLADTMVLHGIVEEEADADPTDEALLDDLVA 195

Query: 117 VDLKNLLISQPDTGEQAL-------EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
             L+ + +++       +       EI            ++         RAE  G    
Sbjct: 196 SVLEKIHVAKAFNSNHQILLAEKAQEIASESQEEEFPVRLLAVDSLTAHFRAEYVGRGE- 254

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
                + + +++ L  L      +   +V  NQ+       FG P    GGN L   S+ 
Sbjct: 255 --LADRQQKLNKHLHDLMRVGDLNNTAVVVTNQVASNPDSFFGDPTQPIGGNILGHTSTF 312

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           R+ +R+           GN+  VK+V      
Sbjct: 313 RMYLRKSK---------GNKRIVKLVDAPNLP 335


>gi|294868756|ref|XP_002765679.1| meiotic recombination protein DMC1, putative [Perkinsus marinus
           ATCC 50983]
 gi|239865758|gb|EEQ98396.1| meiotic recombination protein DMC1, putative [Perkinsus marinus
           ATCC 50983]
          Length = 259

 Score = 67.2 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 72/216 (33%), Gaps = 25/216 (11%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + VS+G   LD  L  GG P  ++VE+YGP  SGKT + +          G   + D+E 
Sbjct: 12  QYVSTGMPSLDAFL-RGGLPVAQLVELYGPAGSGKTQVLMSIAVAVLAGEGRVFWFDSER 70

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQAL--------------EITDMLVRSGAVDIIVI 151
            L     + L          +      A+               +  +    G   ++VI
Sbjct: 71  TLHPERFQSLCEHRSPHAPIEGMLSRMAIKECDDLLDLIRGVEALKTIPTCEGVPCLVVI 130

Query: 152 DSVAALTPRAE---IEGDMGESLPGMQARLMSQALRKLTSSISR-------SKCILVFIN 201
           DSVAA     E   +    G+   G  A ++++    L              +  +V  N
Sbjct: 131 DSVAASARCTEDIILSRMEGDKSEGSDAAVLAERQSLLNRLAVALKGAAWVQRAAVVVSN 190

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
            +                G       ++RL I RV 
Sbjct: 191 HVTADFDSNQSDAFKPALGLTWSHAVNIRLMINRVE 226


>gi|150403555|ref|YP_001330849.1| DNA repair and recombination protein RadB [Methanococcus
           maripaludis C7]
 gi|166218768|sp|A6VJS2|RADB_METM7 RecName: Full=DNA repair and recombination protein radB
 gi|150034585|gb|ABR66698.1| DNA repair and recombination protein RadB [Methanococcus
           maripaludis C7]
          Length = 215

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 96/212 (45%), Gaps = 19/212 (8%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           L  G   K  I +IYGP   GKT + + ++  + + G +  ++D E +L     ++L   
Sbjct: 5   LLNGNIEKKTITQIYGPPGVGKTNICILSMLNAIENGKSVVYIDTEGSLSIERIKQLSGK 64

Query: 119 -----LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
                LKN++I +P T E+  E  + +     + +I+ID + +L  R E+  ++ E+   
Sbjct: 65  NCEELLKNIIIYEPSTFEEQSEALEKIFLLENIGLIIIDGIVSLY-RLELCDNINENT-- 121

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
              R++ + +  L     +    ++  NQ++     +        GG  L+++S   + +
Sbjct: 122 KLNRMLGKQISNLLKVARKKNSGILITNQVKDSANGI-----EPAGGRLLEYWSKSIIKL 176

Query: 234 RRVGSI------KDKDSITGNQTRVKVVKNKM 259
            +  S+      K + +  G   R ++++N +
Sbjct: 177 EKAESVRKLTLEKHRHAKEGENLRFRILQNGL 208


>gi|320168182|gb|EFW45081.1| RAD51C protein [Capsaspora owczarzaki ATCC 30864]
          Length = 423

 Score = 66.8 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 68/227 (29%), Gaps = 45/227 (19%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            + +GS  +D  LG GG P G+I E  G    GKT L +     +          G   +
Sbjct: 109 AIRTGSFDMDAMLGGGGVPVGKITEFCGAPGIGKTQLGIQIAVNAHMPRAIGGLEGEAVY 168

Query: 101 VDAEHALDSIYARKLGV-----------------------------DLKNLLISQPDTGE 131
           +D E +     +  +                                L  +   +     
Sbjct: 169 IDTEGSFIIERSEDIAEGGVRFAAELVASQLPPQQAIGLGGMTAQQVLAGIHYFRVHDYI 228

Query: 132 QALE---ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           + L    I    +       ++I    A   R   +         ++ RL++   +    
Sbjct: 229 EQLALVNILPEFLAEHPAVRVIIVDSVAFHFRHHFDD------MALRTRLLNGMAQSFLK 282

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTG-GNALKFYSSVRLDIR 234
               S   +V +NQM  K+G   G        G +    S+ R+ + 
Sbjct: 283 MAIDSSVAIVLVNQMTTKMGSERGQSHLVPALGESWGHASTNRVIMF 329


>gi|255943873|ref|XP_002562704.1| Pc20g01450 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587439|emb|CAP85474.1| Pc20g01450 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 390

 Score = 66.8 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 81/213 (38%), Gaps = 26/213 (12%)

Query: 48  VSSGSLGLDIALGI-------GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           +++G   LD  L         GG  +G + EI+GP  +GKT+LAL+         G   +
Sbjct: 39  IATGLARLDEVLNDLPDQPDQGGILRGHVTEIFGPPGAGKTSLALNIACN-ALRDGKVVW 97

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAAL 157
           +D    L +    ++ ++L + +  +  T    + +              ++V+DSV+ L
Sbjct: 98  IDTGCPLPTPRLEEMSINLDDFIYFRAHTLAHLIALLARPPKGFPPSGTSLLVVDSVSNL 157

Query: 158 T-----PRAEIEGDMGESLPGMQARL---------MSQALRKLTSSISRSKCILVFINQM 203
                    E++  + E     +A L         ++  L    + ++     +V INQ 
Sbjct: 158 FSAYFPSAQELKDQLAEGKITDKAHLQWLINRRWNIASELGTHLARVAARNIAVVAINQS 217

Query: 204 RMKIGVMFGSPETT-TGGNALKFYSSVRLDIRR 235
             K+     +       G A +     R+ + R
Sbjct: 218 HTKVKGQSHAVLQPLLSGGAWEASVQTRIAVYR 250


>gi|145591606|ref|YP_001153608.1| Fis family transcriptional regulator [Pyrobaculum arsenaticum DSM
           13514]
 gi|145283374|gb|ABP50956.1| transcriptional regulator, Fis family [Pyrobaculum arsenaticum DSM
           13514]
          Length = 312

 Score = 66.8 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 77/237 (32%), Gaps = 20/237 (8%)

Query: 17  EAALSQIQRVYGK-GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           + A+  IQ+   K G +     +       +   +G    D      G  +G I E  G 
Sbjct: 52  DRAVKIIQQALAKAGGVRAATVKELRARQYKTFKTGVADFDEKTPWRGIREGFIYEFAGE 111

Query: 76  ESSGKTTLALHTIAQSQKTG--GTCAFVDAEHALDSIYARKLGVDL--------KNLLIS 125
             +GK+ LA      + K G  G   ++D E          +             ++ + 
Sbjct: 112 FGAGKSMLAHQLSVAALKEGFTGRVVYIDTEGTFSHELVEAVAKRFEADIDKVGDSVYVY 171

Query: 126 QPDTGEQALEITDMLVRSGAVDII---VIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           QP    Q  +I    +     +     V+D++ AL  RAE  G         + + +   
Sbjct: 172 QPANVVQLEQIVKFEIPKHVAEGCRLVVVDTITALY-RAEFVGR---EHLAARQQRIHYL 227

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           +  L           +  NQ+     V   + +   GGN +    + R  + R   +
Sbjct: 228 VDWLRRHARTFGVTSILTNQVMDVPEV--FASKRPAGGNVIAHAVNARFMMSRPNKM 282


>gi|255522446|ref|ZP_05389683.1| recombinase A [Listeria monocytogenes FSL J1-175]
          Length = 61

 Score = 66.4 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 298 WFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352
           W+S+K +R+GQGREN+K +L+E+ +I + I   +R+   +  D   +EP    ++
Sbjct: 1   WYSYKEERIGQGRENAKQYLKEHTDIRDEISKRVREEYEI--DGSNKEPLDEGEE 53


>gi|315230696|ref|YP_004071132.1| DNA repair and recombination RadB-like protein [Thermococcus
           barophilus MP]
 gi|315183724|gb|ADT83909.1| DNA repair and recombination RadB-like protein [Thermococcus
           barophilus MP]
          Length = 221

 Score = 66.0 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 85/236 (36%), Gaps = 33/236 (13%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +++GS  LD  LG GG  +G + +IYG  ++GKTTLA+     ++   G   ++D E
Sbjct: 1   MEKLTTGSKSLDELLG-GGIERGVLTQIYGAFATGKTTLAMQIGMLNK---GKVIYIDTE 56

Query: 105 HALDSIYARKLGVD--------LKNLLISQPDTGEQALEITD--MLVRSGAVDIIVIDSV 154
                   + +           L+  +I +P    +   +      + +    +IV+DSV
Sbjct: 57  GGFSPERLKLMAEKRGIDPEETLQKFIIFEPHDFREQKRVISKLKTIVNNRFALIVVDSV 116

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
            +            E         + + L+ L     +     + INQ+           
Sbjct: 117 TSHY--------RIEKDRQSLNVELGKQLQVLLWLARKYNIAAIVINQVYFDSNS---GS 165

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
                 + L +     L + ++          G +  V + +++       V F I
Sbjct: 166 LKPIAEHTLGYKCKDILRLEKLSK-------PGIRIAV-LERHRFRPEGGIVYFKI 213


>gi|15705849|gb|AAL05848.1| RecA [Burkholderia cepacia]
          Length = 81

 Score = 66.0 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 60/81 (74%), Positives = 68/81 (83%)

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
           KTTL L  IA+ QK GGT AF+DAEHALD  YA KLGV++  LLISQPDTGEQALEITD 
Sbjct: 1   KTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDA 60

Query: 140 LVRSGAVDIIVIDSVAALTPR 160
           LVRSG++D+IVIDSVAAL P+
Sbjct: 61  LVRSGSIDMIVIDSVAALVPK 81


>gi|224069256|ref|XP_002326313.1| predicted protein [Populus trichocarpa]
 gi|222833506|gb|EEE71983.1| predicted protein [Populus trichocarpa]
          Length = 348

 Score = 66.0 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 89/256 (34%), Gaps = 49/256 (19%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPK---------------GRIVEIYGPESSGKTTLALH 86
            + I  ++SGS  LD  L  G + +               G I E+YG   SGKT L   
Sbjct: 90  RQEIIQITSGSRELDKIL-EGKYQRFLSTLNNDPITLDSTGSITEMYGEFRSGKTQLCHT 148

Query: 87  TIAQSQKT------GGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQ 132
                Q         G   ++DAE         ++           L+N+  ++    + 
Sbjct: 149 LCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDH 208

Query: 133 ALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
              +      ++      ++++DS  AL  R +  G    S   M    +++ LR L   
Sbjct: 209 QSRLLLEAASMMVETRFALMIVDSATALY-RTDFSGRGELSARQMH---LAKFLRSLQKL 264

Query: 190 ISRSKCILVFINQMRMKIG---VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
                  +V  NQ+  ++    +  G      GGN +   S+ RL +R+           
Sbjct: 265 ADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGR--------- 315

Query: 247 GNQTRVKVVKNKMASP 262
           G +   KV+ +   + 
Sbjct: 316 GEERICKVISSPCLAE 331


>gi|18202887|sp|Q9F415|RECA_MYCFV RecName: Full=Protein RecA; AltName: Full=Recombinase A; Contains:
           RecName: Full=Mfl RecA intein
 gi|10241728|emb|CAC09590.1| RecA protein [Mycobacterium flavescens]
          Length = 423

 Score = 66.0 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 86/186 (46%), Gaps = 5/186 (2%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
            SG+  + +  +++  +        D  H L+    +        L+ S   + +    +
Sbjct: 243 GSGRIEICVEAMSEGTRVRLRDYLHDT-HGLEVRLRQSGKAGKAVLVFSTASSAKFQELV 301

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
              +  S    ++      +          +  +   + AR++   ++  T S++R    
Sbjct: 302 APYMAPSMEYKLLPRFRGQSTVS----PQFVESTQRLVPARILDVHVKPHTRSMNRFDIE 357

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           +   +   +   ++  SPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+TRVKVVK
Sbjct: 358 VEGNHNYFVDGVMVHNSPETTTGGKALKFYASVRMDVRRIETLKDGXDAVGNRTRVKVVK 417

Query: 257 NKMASP 262
           NK++ P
Sbjct: 418 NKVSPP 423


>gi|119872000|ref|YP_930007.1| Rad51-like protein [Pyrobaculum islandicum DSM 4184]
 gi|119673408|gb|ABL87664.1| Rad51-like protein [Pyrobaculum islandicum DSM 4184]
          Length = 311

 Score = 66.0 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 72/210 (34%), Gaps = 17/210 (8%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC--AFV 101
            ++   +G +  D      G  +G I E  G   +GK+  A        K G T    ++
Sbjct: 77  QVKTFKTGLVEFDEKTPWRGIREGFIYEFAGEYGTGKSMFAHQLAVVGLKEGFTARVVYI 136

Query: 102 DAEHALDSIYARKLGVDLK--------NLLISQPDTGEQALEITDMLVRSGAVDII---V 150
           D E   +      +             +L++ QP    Q  +I    +     +     +
Sbjct: 137 DTEGTFNPTLVETIARRFGVEIERLDTSLVLYQPANVMQLEQIVKYDIPRHIQEGCRLVI 196

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           ID++ AL  RAE  G    +    +   +   LR+   +   +    +  NQ+     + 
Sbjct: 197 IDTITALY-RAEFPGREMLAARQQRIHYLVDWLRRHARTFGVTS---ILANQVMDVPEIF 252

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
            G  +   GGN L    + R  + R    K
Sbjct: 253 AGGVKRPAGGNVLAHTVNARFMMVRPNKAK 282


>gi|301093255|ref|XP_002997476.1| DNA repair and recombination protein radA, putative [Phytophthora
           infestans T30-4]
 gi|262110732|gb|EEY68784.1| DNA repair and recombination protein radA, putative [Phytophthora
           infestans T30-4]
          Length = 306

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 82/222 (36%), Gaps = 29/222 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +++GS  LD  LG GG     + E++G   +GKT L      +           D E  L
Sbjct: 103 ITTGSQQLDQILG-GGLETMSVTEVHGEFRTGKTQLCHTGTFRP----------DPEDVL 151

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           D+I   +       + +         L +       G   +++IDSV AL          
Sbjct: 152 DNIIVARAHSHDAQMDLVV------KLGVLFADPDQGPFRLLIIDSVTALFR----TDFS 201

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI--GVMFGSPETTTGGNALKF 225
           G      + + ++Q L +L          ++ +NQ+       V+FGS     GG+ +  
Sbjct: 202 GRGELSERQQRLNQHLARLVKHAEEFNIAVLVVNQVMADPVANVLFGSEMKPVGGHVMSH 261

Query: 226 YSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
               R+ ++      R+  + D   +   +  +++ +  +  
Sbjct: 262 GVHTRVLMKKGRAENRICKVIDSPCMPEAECSIQLYEGGVTD 303


>gi|11994857|dbj|BAB19961.1| DMC1 homologue CnDMC1 [Hydra vulgaris]
          Length = 210

 Score = 65.6 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 66/178 (37%), Gaps = 24/178 (13%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------ 92
             I +    +S+GS+ LD  LG GG     I E +G   +GKT ++      +Q      
Sbjct: 38  SEIRKQCFRISTGSMELDKLLG-GGIESMSITEAFGEFRTGKTQISHTLCVTAQLPGPNN 96

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSG 144
             GG   F+D E+       R +           L N++  +  T EQ  E+ DM+    
Sbjct: 97  YPGGKVMFIDTENTFRPNRLRSIADRFNLDHEAMLGNIVFCRAYTSEQQFEVLDMVSAKF 156

Query: 145 A-----VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
                   +++IDS+ AL          G      + + + Q L KL          +
Sbjct: 157 HEEAGVFKLLIIDSIMALFR----VDYSGRGELADRQQKLGQMLSKLQKISEEYNVAV 210


>gi|18202885|sp|Q9F410|RECA_MYCSH RecName: Full=Protein RecA; AltName: Full=Recombinase A; Contains:
           RecName: Full=Msh RecA intein
 gi|10241810|emb|CAC09592.1| RecA protein [Mycobacterium shimoidei]
          Length = 423

 Score = 65.6 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 7/187 (3%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
            SG+  + +  + +  +        D  H LD             L+ S   T +    +
Sbjct: 243 GSGRIAICVEAMTEGTRVRLRDYLRDT-HGLDVRLRSAGSAGKTVLVFSMAATAKFQELV 301

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALRKLTSSISRSKC 195
              +  S    ++          R+ +     E +   + AR++   ++  T S++R   
Sbjct: 302 APYMAPSMEYKLL-----PRFRGRSTVRPQFVEPTQRLVPARILDVHVKPHTRSMNRFDI 356

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
            +   +   +   ++  SPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+TRVKVV
Sbjct: 357 EVEGNHNYFVDGVMVHNSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNRTRVKVV 416

Query: 256 KNKMASP 262
           KNK++ P
Sbjct: 417 KNKVSPP 423


>gi|47717757|gb|AAT37921.1| recombinase A [Borrelia garinii]
          Length = 53

 Score = 65.6 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/53 (69%), Positives = 45/53 (84%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           IGG+P+GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   IGGYPRGRIIEIFGPESSGKTTLILQAIAEVQKEGGIAAFIDAEHALDPVYAK 53


>gi|149239438|ref|XP_001525595.1| meiotic recombination protein DMC1 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146451088|gb|EDK45344.1| meiotic recombination protein DMC1 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 220

 Score = 65.6 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 79/222 (35%), Gaps = 31/222 (13%)

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKLGVD-- 118
             I E++G    GKT L       +Q         G  A++D E        R +     
Sbjct: 1   MSITEVFGEFRCGKTQLCHTLCVAAQLPKDLGGGEGRVAYIDTEGTFRPERIRAIANRFG 60

Query: 119 ------LKNLLISQPDTGEQALEITDM---LVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
                 L+N+  ++    E  +E+ +     +  G   ++++DS+ A   R +  G    
Sbjct: 61  VDPDNCLENISYARALNSEHQIELVEQLGNELAEGTYSLLIVDSILACF-RVDYSGRGE- 118

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE----TTTGGNALKF 225
                + + ++Q L  LT         +   NQ++   G              GG+ L  
Sbjct: 119 --LNERQQKLNQHLSHLTRLAEDYNIAVFLTNQVQSDPGASSLFAAADGRKPVGGHVLAH 176

Query: 226 YSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
            S+ R+ +R      RVG ++D  ++   +    + +  +  
Sbjct: 177 ASATRILLRKGRGEERVGKLQDSPNMPEKECVYVIGEGGIKD 218


>gi|313185507|gb|ADR50318.1| recombinase A [Borrelia burgdorferi]
          Length = 51

 Score = 65.2 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/51 (70%), Positives = 44/51 (86%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G+P+GRI+EI+GPESSGKTTL L  IA+ QK GGT AF+DAEHALD +YA+
Sbjct: 1   GYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGTAAFIDAEHALDPVYAK 51


>gi|219850935|ref|YP_002465367.1| DNA repair and recombination protein RadB [Methanosphaerula
           palustris E1-9c]
 gi|219545194|gb|ACL15644.1| DNA repair and recombination protein RadB [Methanosphaerula
           palustris E1-9c]
          Length = 224

 Score = 65.2 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 87/223 (39%), Gaps = 24/223 (10%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SG+  LD  LG GG+    I + +G  + GK+TL         ++G    ++D E     
Sbjct: 7   SGNSDLDRLLG-GGYEPRIITQYFGEPAGGKSTLCQIAAVSCLRSGKAVVYIDTEGFSTE 65

Query: 110 IYARKLGVDLKNL-----LISQPDTGEQALEI--TDMLVRSGAVDIIVIDSVAALTPRAE 162
            + +  G +   L     L    D  EQ L I  T+ +++S    ++V+DS  AL     
Sbjct: 66  RFRQIAGDETDALAENLFLFEPLDFEEQGLMIGNTEQVLKSKESGLVVMDSATALYRTDL 125

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
             G           R +++ +  L     +    ++  NQ+    G    S     GGNA
Sbjct: 126 ERGQ-------DALRALTRQMVCLLGLSRKYDLPVIITNQIYTDPGTNRVSG---LGGNA 175

Query: 223 LKFYSSVRLDI------RRVGSIKDKDSITGNQTRVKVVKNKM 259
           L+  S V + +      RR   +K +    G      + ++ +
Sbjct: 176 LEHISKVIVQVEKTDSQRRARLVKHRSKPEGAVLDFVITEDGI 218


>gi|149191858|ref|ZP_01870093.1| hypothetical protein VSAK1_26830 [Vibrio shilonii AK1]
 gi|148834293|gb|EDL51295.1| hypothetical protein VSAK1_26830 [Vibrio shilonii AK1]
          Length = 231

 Score = 65.2 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 8/126 (6%)

Query: 32  IMQLGSQGSIFEG------IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
           I +L S+  I++G      IE  S+G   LD  LG GGFP   +++I  P   G+  L L
Sbjct: 5   ISELQSKQLIWKGARAESFIECHSTGFAELDRRLG-GGFPTSGVIDIQSPLGIGELRL-L 62

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
              AQ+Q T     F++    L + Y    G+D   +L+  P++G+ AL   +  ++SGA
Sbjct: 63  MPYAQAQTTERLLVFINPPGYLCAEYLYAQGIDPAKILLIYPESGKHALWAAEQCLKSGA 122

Query: 146 VDIIVI 151
              + +
Sbjct: 123 CCGVCL 128


>gi|331243414|ref|XP_003334350.1| DNA repair protein RAD51 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309313340|gb|EFP89931.1| DNA repair protein RAD51 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 217

 Score = 65.2 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 79/218 (36%), Gaps = 31/218 (14%)

Query: 72  IYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYAR----KLGVD--- 118
           +YG    GKT L       +Q        GG  A++D E        R    + G+D   
Sbjct: 4   VYGEFRCGKTQLCHTLCVTAQLPAEMGGGGGKAAYIDTEGTFRPERIRTIADRFGMDPEA 63

Query: 119 -LKNLLISQPDTGEQALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEGDMGESLPG 173
            L N+++ +    E  +E+   L    A D    ++++DS+ AL          G     
Sbjct: 64  VLDNIIVGRAANSEHQMELIVHLAAKFAEDGTFRLLIVDSIMALFR----VDFSGRGELS 119

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS---PETTTGGNALKFYSSVR 230
            + + ++Q L +LT         +   NQ++   G         +   GG+ L   +S R
Sbjct: 120 ERQQKLNQMLARLTRISEEFNLCIFLTNQVQADPGAASMFAGADKKPVGGHVLAHAASTR 179

Query: 231 LDIR------RVGSIKDKDSITGNQTRVKVVKNKMASP 262
           + +R      RV  + D   +   +   K+    +   
Sbjct: 180 ISLRKGRGDERVAKLCDSPDMPEGEASYKIATGGIEDC 217


>gi|11994859|dbj|BAB19962.1| DMC1 homopogue CnDMC1 [Hydra oligactis]
          Length = 210

 Score = 65.2 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 66/178 (37%), Gaps = 24/178 (13%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------ 92
             I +    +S+GS+ LD  LG GG     I E +G   +GKT ++      +Q      
Sbjct: 38  SEIRKQCFRISTGSMELDKLLG-GGIESMSITEAFGEFRTGKTQISHTLCVTAQLPGQNN 96

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSG 144
             GG   F+D E+       R +           L N++  +  T EQ  E+ DM+    
Sbjct: 97  YPGGKVMFIDTENTFRPNRLRSIADRFNLDHEAMLGNIVFCRAYTSEQQFEVLDMVSAKF 156

Query: 145 A-----VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
                   +++IDS+ AL          G      + + + Q L KL          +
Sbjct: 157 HEEAGVFKLLIIDSIMALFR----VDYSGRGELADRQQKLGQMLSKLQKISEEYNVAV 210


>gi|313185523|gb|ADR50326.1| recombinase A [Borrelia burgdorferi]
          Length = 51

 Score = 65.2 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/51 (68%), Positives = 43/51 (84%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G+P+GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   GYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGVAAFIDAEHALDPVYAK 51


>gi|18202888|sp|Q9F416|RECA_MYCFA RecName: Full=Protein RecA; AltName: Full=Recombinase A; Contains:
           RecName: Full=Mfa RecA intein
 gi|10241732|emb|CAC09589.1| RecA protein [Mycobacterium fallax]
          Length = 422

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 8/187 (4%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
            SG+  + +  +A+  +        D       +  R  G     L  S   T +    +
Sbjct: 243 GSGRIEICVEAMAEGTRERLRDYLRDTHGL--DVRLRSAGSGKSMLTFSTEATAKFQELV 300

Query: 137 TDMLVRSGAVDIIV-IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
              +  S    ++     +  + PR         +   + AR++   ++  T S++R   
Sbjct: 301 APHMAPSMEHKLLPRFRGLGTVEPRFVEP-----AQRLVPARVLDVQVKPRTRSMNRFDI 355

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
            +   +   +   ++  SPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+TRVKVV
Sbjct: 356 EVEGNHNYFVDGVMVHNSPETTTGGKALKFYASVRMDVRRIETLKDGSDAVGNRTRVKVV 415

Query: 256 KNKMASP 262
           KNK++ P
Sbjct: 416 KNKVSPP 422


>gi|313185441|gb|ADR50285.1| recombinase A [Borrelia burgdorferi]
          Length = 51

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/51 (66%), Positives = 43/51 (84%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G+P+GRI+E++GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   GYPRGRIIEVFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAK 51


>gi|78482940|emb|CAJ20135.1| recA protein [Borrelia spielmanii]
 gi|78482942|emb|CAJ20136.1| recA protein [Borrelia spielmanii]
 gi|313185435|gb|ADR50282.1| recombinase A [Borrelia burgdorferi]
 gi|313185437|gb|ADR50283.1| recombinase A [Borrelia burgdorferi]
 gi|313185481|gb|ADR50305.1| recombinase A [Borrelia burgdorferi]
 gi|313185483|gb|ADR50306.1| recombinase A [Borrelia burgdorferi]
 gi|313185485|gb|ADR50307.1| recombinase A [Borrelia burgdorferi]
 gi|313185487|gb|ADR50308.1| recombinase A [Borrelia burgdorferi]
 gi|313185495|gb|ADR50312.1| recombinase A [Borrelia burgdorferi]
 gi|313185497|gb|ADR50313.1| recombinase A [Borrelia burgdorferi]
 gi|313185499|gb|ADR50314.1| recombinase A [Borrelia burgdorferi]
 gi|313185501|gb|ADR50315.1| recombinase A [Borrelia burgdorferi]
 gi|313185503|gb|ADR50316.1| recombinase A [Borrelia burgdorferi]
 gi|313185505|gb|ADR50317.1| recombinase A [Borrelia burgdorferi]
 gi|313185509|gb|ADR50319.1| recombinase A [Borrelia burgdorferi]
 gi|313185511|gb|ADR50320.1| recombinase A [Borrelia burgdorferi]
 gi|313185515|gb|ADR50322.1| recombinase A [Borrelia burgdorferi]
 gi|313185517|gb|ADR50323.1| recombinase A [Borrelia burgdorferi]
 gi|313185519|gb|ADR50324.1| recombinase A [Borrelia burgdorferi]
 gi|313185521|gb|ADR50325.1| recombinase A [Borrelia burgdorferi]
 gi|313185525|gb|ADR50327.1| recombinase A [Borrelia burgdorferi]
 gi|313185527|gb|ADR50328.1| recombinase A [Borrelia burgdorferi]
 gi|313185529|gb|ADR50329.1| recombinase A [Borrelia burgdorferi]
 gi|313185531|gb|ADR50330.1| recombinase A [Borrelia burgdorferi]
 gi|313185533|gb|ADR50331.1| recombinase A [Borrelia burgdorferi]
 gi|313185535|gb|ADR50332.1| recombinase A [Borrelia burgdorferi]
 gi|313185537|gb|ADR50333.1| recombinase A [Borrelia burgdorferi]
 gi|313185539|gb|ADR50334.1| recombinase A [Borrelia burgdorferi]
 gi|313185541|gb|ADR50335.1| recombinase A [Borrelia burgdorferi]
 gi|313185543|gb|ADR50336.1| recombinase A [Borrelia burgdorferi]
 gi|313185545|gb|ADR50337.1| recombinase A [Borrelia burgdorferi]
 gi|313185549|gb|ADR50339.1| recombinase A [Borrelia burgdorferi]
 gi|313185551|gb|ADR50340.1| recombinase A [Borrelia burgdorferi]
 gi|313185553|gb|ADR50341.1| recombinase A [Borrelia burgdorferi]
 gi|313185555|gb|ADR50342.1| recombinase A [Borrelia burgdorferi]
 gi|313185557|gb|ADR50343.1| recombinase A [Borrelia burgdorferi]
 gi|313185559|gb|ADR50344.1| recombinase A [Borrelia burgdorferi]
 gi|313185561|gb|ADR50345.1| recombinase A [Borrelia burgdorferi]
 gi|313185563|gb|ADR50346.1| recombinase A [Borrelia burgdorferi]
 gi|313185565|gb|ADR50347.1| recombinase A [Borrelia burgdorferi]
 gi|313185567|gb|ADR50348.1| recombinase A [Borrelia burgdorferi]
 gi|313185569|gb|ADR50349.1| recombinase A [Borrelia burgdorferi]
 gi|313185571|gb|ADR50350.1| recombinase A [Borrelia burgdorferi]
 gi|313185573|gb|ADR50351.1| recombinase A [Borrelia burgdorferi]
 gi|313185575|gb|ADR50352.1| recombinase A [Borrelia burgdorferi]
          Length = 51

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/51 (68%), Positives = 43/51 (84%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G+P+GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   GYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAK 51


>gi|159904665|ref|YP_001548327.1| DNA repair and recombination protein RadB [Methanococcus
           maripaludis C6]
 gi|159886158|gb|ABX01095.1| DNA repair and recombination protein RadB [Methanococcus
           maripaludis C6]
          Length = 215

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 96/212 (45%), Gaps = 19/212 (8%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           L  G   K  I +IYGP   GKT + + ++ ++ + G    ++D E +L     ++L   
Sbjct: 5   LLNGNIEKKTITQIYGPPGVGKTNICILSMLKAIENGKNVVYIDTEGSLSIERIKQLSGK 64

Query: 119 -----LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
                LKN++I +P + E+  E  + +     + +I+ID + +L  R E+  ++ E+   
Sbjct: 65  NCDELLKNIIIYEPSSFEEQSEALEKIFLLENIGLIIIDGIVSLY-RLELCDNINENT-- 121

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
              R++ + +  +          ++  NQ++  +  +        GG  L+++S   + I
Sbjct: 122 KLNRMLGKQISNILKVARMKNSGILITNQVKDSVKGI-----EPAGGRLLEYWSKSIVKI 176

Query: 234 RRVGSI------KDKDSITGNQTRVKVVKNKM 259
            +  SI      K + +  G   + ++++N +
Sbjct: 177 EKTESIRKLTLEKHRHAKEGENLKFRILQNGL 208


>gi|313185469|gb|ADR50299.1| recombinase A [Borrelia burgdorferi]
          Length = 51

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/51 (70%), Positives = 43/51 (84%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G+P+GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD IYA+
Sbjct: 1   GYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPIYAK 51


>gi|89145590|gb|ABD61991.1| RecA [Borrelia californiensis]
          Length = 53

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/53 (64%), Positives = 43/53 (81%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           +GG+P+GRI+EI+GPE  GKTTL L  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   LGGYPRGRIIEIFGPELFGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAK 53


>gi|18202889|sp|Q9F417|RECA_MYCCI RecName: Full=Protein RecA; AltName: Full=Recombinase A; Contains:
           RecName: Full=Mch RecA intein
 gi|10241730|emb|CAC09588.1| RecA protein [Mycobacterium chitae]
          Length = 423

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/191 (25%), Positives = 84/191 (43%), Gaps = 15/191 (7%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
            SG+  + +  ++   +        D  H LD             L+ +   + +    +
Sbjct: 243 GSGRIEICVEAMSVGSRDRLRDYLRDT-HGLDVRLRHAGAAGKAMLVFTTAASAKFQEIV 301

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG-----MQARLMSQALRKLTSSIS 191
              +  S             L PR   +G +           + AR++   ++  T S++
Sbjct: 302 APYMAPSMEYK---------LLPRFRGQGTVAPQFVEPTERLVPARILDIHVKPHTRSMN 352

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           R    +   +   +   ++  SPETTTGG ALKFY+SVR+D+RR+ ++KD     GN+TR
Sbjct: 353 RFDIEVEGNHNYFVDGVMVHNSPETTTGGKALKFYASVRIDVRRIETLKDGTDAVGNRTR 412

Query: 252 VKVVKNKMASP 262
            K+VKNK++ P
Sbjct: 413 AKIVKNKVSPP 423


>gi|20094468|ref|NP_614315.1| RadA recombinase [Methanopyrus kandleri AV19]
 gi|19887561|gb|AAM02245.1| RadA recombinase [Methanopyrus kandleri AV19]
          Length = 316

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 5/91 (5%)

Query: 29  KGAIMQ---LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
           KG IM+   L       +  +V+ +G  G D  +G GG P G IV +YGP  +GK+  A 
Sbjct: 68  KG-IMEAKTLADLLEEEKKRDVIPTGIQGFDERMG-GGLPTGVIVGMYGPPGAGKSQFAT 125

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
              A + K G +  ++D E+A       ++G
Sbjct: 126 QVAAHALKEGESVLYIDTENAFRPQRLLEIG 156


>gi|89145586|gb|ABD61989.1| RecA [Borrelia andersonii]
          Length = 53

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/53 (67%), Positives = 44/53 (83%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           IGG+P+GRI+EI+G ESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   IGGYPRGRIIEIFGLESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAK 53


>gi|294495558|ref|YP_003542051.1| circadian clock protein, KaiC [Methanohalophilus mahii DSM 5219]
 gi|292666557|gb|ADE36406.1| putative circadian clock protein, KaiC [Methanohalophilus mahii DSM
           5219]
          Length = 302

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 81/223 (36%), Gaps = 23/223 (10%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKG---AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
           E  +  K+  LE AL  +     KG   + M     G++   I+ +S+G +GLD  L  G
Sbjct: 24  EKELGAKNLVLEKALLSLD----KGRFRSKM---DAGNLQCSIKRISTGIVGLDDML-EG 75

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS--IYARKLGVDLK 120
           G P+G  V + GP  +GKTTL +  + +    G  C     E  L        + G D+ 
Sbjct: 76  GIPEGFSVIVTGPPGTGKTTLCMQYLMEGVTKGEKCVLFSFEERLPQLVQQFMRFGWDVA 135

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
             +       +  LE+  M + +      +I++     PR  +   +       +    S
Sbjct: 136 KYID------DGYLEVFGMSMLTFEEITEIIETYK---PRRIVFDSL-NVFSNPENFRNS 185

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
              R L  +I         I + +  I           G   +
Sbjct: 186 GGWRSLHRTIKNRNITSFLITEKKHGIETKDFDEYDFLGDGII 228


>gi|313185439|gb|ADR50284.1| recombinase A [Borrelia burgdorferi]
          Length = 51

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/51 (68%), Positives = 44/51 (86%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G+P+GRI+EI+GPESSGKTTL L +IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   GYPRGRIIEIFGPESSGKTTLTLQSIAEVQKEGGIAAFIDAEHALDPVYAK 51


>gi|225873140|ref|YP_002754599.1| hypothetical protein ACP_1517 [Acidobacterium capsulatum ATCC
           51196]
 gi|225794194|gb|ACO34284.1| hypothetical protein ACP_1517 [Acidobacterium capsulatum ATCC
           51196]
          Length = 341

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 12/128 (9%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   LD  L  GG P G I EI GPE SG+T +AL  +A+  ++   CA+VDA  A+D 
Sbjct: 36  TGIEALDKLL-HGGLPVGAISEISGPECSGRTAIALSFLARMTQS-HFCAWVDAGDAMDP 93

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII----------VIDSVAALTP 159
           + A  +GVDL  LL  +      A   +           +          +      + P
Sbjct: 94  VSAASVGVDLNRLLWVRCGVQTIAPRGSTDYRFELPAKYLQPEPVVAPKGLPTGSFGMHP 153

Query: 160 RAEIEGDM 167
           R+E++G  
Sbjct: 154 RSEVKGMH 161


>gi|18202884|sp|Q9F407|RECA_MYCTH RecName: Full=Protein RecA; AltName: Full=Recombinase A; Contains:
           RecName: Full=Mth RecA intein
 gi|10241812|emb|CAC09593.1| RecA protein [Mycobacterium thermoresistibile]
          Length = 424

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/93 (38%), Positives = 58/93 (62%)

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           +   + AR++   +   T S++R    +   +   +   ++  SPETTTGG ALKFY+SV
Sbjct: 332 TQRLVPARILDVHVEPHTRSMNRYDIEVEGNHNYFVDGVMVHNSPETTTGGKALKFYASV 391

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           R+D+RR+ ++KD     GN+TR K+VKNK++ P
Sbjct: 392 RIDVRRIETLKDGTEAVGNRTRAKIVKNKVSPP 424


>gi|292654282|ref|YP_003534179.1| DNA repair and recombination protein RadA [Haloferax volcanii DS2]
 gi|2500108|sp|Q48328|RADA_HALVO RecName: Full=DNA repair and recombination protein radA
 gi|1378032|gb|AAC44121.1| RadA [Haloferax volcanii]
 gi|291370076|gb|ADE02303.1| DNA repair and recombination protein RadA [Haloferax volcanii DS2]
          Length = 343

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/288 (17%), Positives = 90/288 (31%), Gaps = 62/288 (21%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +  G+ M L       + I  +S     +D  LG GG     I E+YG   +GK+ +   
Sbjct: 66  FETGS-MVL----ERRQQIGKLSWQIDEVDELLG-GGLETQSITEVYGEFGAGKSQITHQ 119

Query: 87  TIAQSQ------KTGGTCAFVDAEHALDSIYARKLGVD---------------------- 118
                Q        GG C F+D+E          +                         
Sbjct: 120 LAVNVQLPPEQGGLGGGCIFIDSEDTFRPERIDDMVRGLEDEALEATLDDREMEGSIDDE 179

Query: 119 ----------LKNLLISQPDTGEQALEITDM--------LVRSGAVDIIVIDSVAALTPR 160
                     L  + +++       + + +               V ++ +DS+ A   R
Sbjct: 180 ETIKALVDDFLDKIHVAKAFNSNHQILLAEKAKELAGEHEDTEWPVRLLCVDSLTAHF-R 238

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
           AE  G         + + +++ L  L          ++  NQ+       FG P    GG
Sbjct: 239 AEYVGR---GELAERQQKLNKHLHDLMRIGDLFNTGILVTNQVSSNPDSYFGDPTQPIGG 295

Query: 221 NALKFYSSVRLDIRRVGSIK------DKDSITGNQTRVKVVKNKMASP 262
           N L   S+ R+ +R+    K      D  ++   +  ++V    +   
Sbjct: 296 NILGHTSTFRIYLRKSKGDKRIVRLVDAPNLADGEAIMRVQDAGLKPE 343


>gi|313185491|gb|ADR50310.1| recombinase A [Borrelia burgdorferi]
          Length = 51

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/51 (68%), Positives = 44/51 (86%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G+P+GRI+EI+GPESSGKTTLA+  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   GYPRGRIIEIFGPESSGKTTLAIQAIAEVQKEGGIAAFIDAEHALDPVYAK 51


>gi|313185489|gb|ADR50309.1| recombinase A [Borrelia burgdorferi]
 gi|313185493|gb|ADR50311.1| recombinase A [Borrelia burgdorferi]
          Length = 51

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/51 (68%), Positives = 44/51 (86%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G+P+GR++EI+GPESSGKTTLAL  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   GYPRGRMIEIFGPESSGKTTLALQAIAEVQKEGGIAAFIDAEHALDPVYAK 51


>gi|240102587|ref|YP_002958896.1| RecA family AAA ATPase [Thermococcus gammatolerans EJ3]
 gi|239910141|gb|ACS33032.1| RecA family AAA ATPase [Thermococcus gammatolerans EJ3]
          Length = 449

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 78/211 (36%), Gaps = 18/211 (8%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + +G    D  LG GGF KG I  I GP  SGKT  AL   +   K G    ++  E 
Sbjct: 237 ERIKTGIPKFDELLG-GGFYKGSINLIAGPTGSGKTIFALTIASNMAKQGFRVLYMTFEE 295

Query: 106 ALDSIYAR----KLGVDLKNLLISQ-PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           AL ++        L  D K + +     T  Q   +   L+R  + +I+ IDS++A+   
Sbjct: 296 ALGALLGTTKNLGLDGDFKVISLIPEAMTPIQYYALIKRLLRENSSEILFIDSISAMQSH 355

Query: 161 AEIEGDM----------GESLPGMQARLMSQALRKL--TSSISRSKCILVFINQMRMKIG 208
            E E  +           E    +    +SQ    L  T   +    I +   ++  + G
Sbjct: 356 MEEEDFIKAIRYLQLLSKEKNITLIMTYLSQNSNLLQSTGFSTLMDTITILSYELPSRPG 415

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
                          +  + +R     +G I
Sbjct: 416 EFLKRYLMVLKARHSEHKAVLRKFKITLGGI 446



 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 14/126 (11%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E++ +G  GLD AL  GGF +G  + I G   +GKT LA+H +  + K G   A++   
Sbjct: 1   MELIPTGIPGLDKALS-GGFSRGTSILIAGNPGTGKTHLAVHVLFNNMKKGLKGAYISFA 59

Query: 105 HALDSIYARKLGVDLK-------------NLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
                 Y   +   L              ++L    +  +  L+     +     DIIV 
Sbjct: 60  ETKRQFYQNAMESGLNFEEAEKKGVFKFYDMLTMPKEEMKDFLDFLIQDLVEWKPDIIVF 119

Query: 152 DSVAAL 157
           DS+  L
Sbjct: 120 DSITVL 125


>gi|313185445|gb|ADR50287.1| recombinase A [Borrelia burgdorferi]
 gi|313185447|gb|ADR50288.1| recombinase A [Borrelia burgdorferi]
 gi|313185449|gb|ADR50289.1| recombinase A [Borrelia burgdorferi]
 gi|313185451|gb|ADR50290.1| recombinase A [Borrelia burgdorferi]
 gi|313185453|gb|ADR50291.1| recombinase A [Borrelia burgdorferi]
 gi|313185455|gb|ADR50292.1| recombinase A [Borrelia burgdorferi]
 gi|313185457|gb|ADR50293.1| recombinase A [Borrelia burgdorferi]
 gi|313185459|gb|ADR50294.1| recombinase A [Borrelia burgdorferi]
 gi|313185461|gb|ADR50295.1| recombinase A [Borrelia burgdorferi]
 gi|313185463|gb|ADR50296.1| recombinase A [Borrelia burgdorferi]
 gi|313185465|gb|ADR50297.1| recombinase A [Borrelia burgdorferi]
 gi|313185467|gb|ADR50298.1| recombinase A [Borrelia burgdorferi]
          Length = 51

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/51 (66%), Positives = 42/51 (82%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G+P+GRI+EI+GPESSGK TL L  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   GYPRGRIIEIFGPESSGKATLTLQAIAEVQKEGGIAAFIDAEHALDPVYAK 51


>gi|212224558|ref|YP_002307794.1| DNA repair and recombination protein RadB [Thermococcus onnurineus
           NA1]
 gi|226736612|sp|B6YXT4|RADB_THEON RecName: Full=DNA repair and recombination protein radB
 gi|212009515|gb|ACJ16897.1| RadB recombinase [Thermococcus onnurineus NA1]
          Length = 224

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 82/233 (35%), Gaps = 33/233 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G   LD  LG GG     + ++YG  ++GKTTLA+     S   GG  A+VD E   
Sbjct: 2   LSTGVKSLDELLG-GGIAPEVLTQVYGSFATGKTTLAVQIGLLS---GGKVAYVDTEGGF 57

Query: 108 DSIYARKLGVD--------LKNLLISQPDTGEQALEITD--MLVRSGAVDIIVIDSVAAL 157
                 ++           L+  ++  P   ++          +   +  +IV+DS+ A 
Sbjct: 58  SPERLAQMAESRGLDPEEALQRFILFTPADFKEQRRTIGSLKKIVDKSFSLIVVDSITAH 117

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
               E                + + L+ L     +    ++ INQ+              
Sbjct: 118 YRVEE--------QRKNLTAELGKQLQVLLWLARKLGIPVIVINQVHFD---SRAERMKP 166

Query: 218 TGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
              + L +     L +       DK +  G +  + + +++       V F I
Sbjct: 167 VAEHTLGYRCKDILRL-------DKLNTPGLRVAL-LERHRFRPEGGMVYFRI 211


>gi|170181037|gb|ACB11495.1| RAD51 [Pinus sylvestris]
          Length = 176

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 19/161 (11%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            I  +SSGS  LD  L  GG   G I EIYG   +GKT L        Q         G 
Sbjct: 9   EIIQISSGSRELDKLL-EGGVETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGK 67

Query: 98  CAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEI---TDMLVRSGAV 146
             F+DAE         ++           L+N+  ++    +    +      ++     
Sbjct: 68  ALFIDAEGTFRPQRLLQIAERFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMAETRF 127

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
            ++++DS  +L  R +  G    S   M      ++L+K+ 
Sbjct: 128 ALMIVDSATSLY-RTDFIGRGELSARQMHLAKFLRSLQKMA 167


>gi|300857272|ref|YP_003782256.1| DNA repair protein RadA [Clostridium ljungdahlii DSM 13528]
 gi|300437387|gb|ADK17154.1| DNA repair protein RadA [Clostridium ljungdahlii DSM 13528]
          Length = 451

 Score = 63.7 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 88/251 (35%), Gaps = 32/251 (12%)

Query: 31  AIMQLGSQGSIFEGI-----EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
           + M+  S       I     E + +G + L+  LG GG  KG I  I G    GK+TL L
Sbjct: 46  SNMKFSSTPKSINNIKSGEYERLDTGIMELNRVLG-GGIVKGSITLISGAPGIGKSTLLL 104

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
            T +   +  G   +V  E + + I  R  G  L +L        E  ++     +    
Sbjct: 105 QTASNIAEKYGKVLYVSGEESEEQIKMR--GDRLDSLSNDLYIVSEVNIDKIKAHIEQTK 162

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
              +V+DS+  L   +        S     +  + +        I +S  I  FI     
Sbjct: 163 PVFVVVDSIQTLFKESISSAPGSVSQVRETSNDIMR--------IGKSNNISFFIVAHVT 214

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           K G +        G   L+      L          +   TG    ++ VKN+  +  + 
Sbjct: 215 KQGEL-------AGPRVLEHMVDTVLSF--------EGERTGELRILRTVKNRFGTTSEI 259

Query: 266 VEFDIMYGEGI 276
             F++  G G+
Sbjct: 260 GVFEMA-GSGL 269


>gi|57641834|ref|YP_184312.1| DNA repair and recombination protein RadA [Thermococcus
           kodakarensis KOD1]
 gi|73913728|sp|Q5JET4|RADA_PYRKO RecName: Full=DNA repair and recombination protein radA; Contains:
           RecName: Full=Pko radA intein
 gi|57160158|dbj|BAD86088.1| RadA/Rad51 recombinase [Thermococcus kodakarensis KOD1]
          Length = 836

 Score = 63.7 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 77/211 (36%), Gaps = 32/211 (15%)

Query: 79  GKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKLGVD--------LKNLLI 124
             T LA       QK       GG+  ++D E+       +++  +        LKN+ +
Sbjct: 630 HNTQLAHTLAVMVQKPPEEGGLGGSVIWIDTENTFRPERIKQIAENRGLDPEETLKNIYV 689

Query: 125 SQPDTGEQAL--------EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
           ++       +         I +       V ++V+DS+ A   RAE  G         + 
Sbjct: 690 ARAFNSNHQMLLVEKAEEIIKEKAESDRPVKLLVVDSLMAHF-RAEYVGR---GTLAERQ 745

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           + +++ L  L          +   NQ++ K    FG P    GG+ L   +++R+ +R+ 
Sbjct: 746 QKLAKHLADLHRLADLYDIAVFVTNQVQAKPDAFFGDPTRPVGGHILAHSATLRVYLRKG 805

Query: 237 GSIK------DKDSITGNQTRVKVVKNKMAS 261
            + K      D   +   +   ++ +  +  
Sbjct: 806 KAGKRVARLIDSPHLPEGEAVFRITEKGVED 836



 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           G  M+          I  +S+GS  LD  LG GG     I E++G   SGK
Sbjct: 100 GTFMRADEYMKRRTTIGKISTGSKALDKLLG-GGIETQAITEVFGEFGSGK 149


>gi|289581501|ref|YP_003479967.1| DNA repair and recombination protein RadA [Natrialba magadii ATCC
           43099]
 gi|289531054|gb|ADD05405.1| DNA repair and recombination protein RadA [Natrialba magadii ATCC
           43099]
          Length = 343

 Score = 63.7 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 83/275 (30%), Gaps = 57/275 (20%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG---- 95
                I  +S     +D  LG GG     I E+YG   SGK+ +        Q       
Sbjct: 74  ERRNEIGKLSWQIDEVDELLG-GGIETQSITEVYGEFGSGKSQVTHQMAVNVQLPKEVGG 132

Query: 96  --GTCAFVDAEHALDSIYARKL--------------------------------GVDLKN 121
             G   F+D+E          +                                   L  
Sbjct: 133 LHGAAMFIDSEDTFRPERIDDMVRGLPEEAINAALEDREIEGSAGDEDAVDELVDDVLDK 192

Query: 122 LLISQPDTGEQALEITDM--------LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
           + +++       + + +               + ++ +DS+ A   RAE  G        
Sbjct: 193 IHVAKAFNSNHQMLLAEKAKELASEHEEAEYPIRLLCVDSLTAHF-RAEYVGRGE---LA 248

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
            + + +++ L  L    +     ++  NQ+       FG P    GGN L   S+ R+ +
Sbjct: 249 ERQQKLNKHLHDLDKVGNLYNTSVIVTNQVASNPDSFFGDPTQPIGGNILGHKSTFRMYL 308

Query: 234 RRVGSIK------DKDSITGNQTRVKVVKNKMASP 262
           R+    K      D  ++   +  ++V    +   
Sbjct: 309 RKSKGDKRIVRLVDAPNLADGEAVMRVQDEGLKPE 343


>gi|257387245|ref|YP_003177018.1| DNA repair and recombination protein RadA [Halomicrobium mukohataei
           DSM 12286]
 gi|257169552|gb|ACV47311.1| DNA repair and recombination protein RadA [Halomicrobium mukohataei
           DSM 12286]
          Length = 349

 Score = 63.7 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 80/259 (30%), Gaps = 65/259 (25%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG------GTCAFVDAEHAL 107
            +D  LG GG     I E+YG   +GK+ +        Q         G+  FVD+E   
Sbjct: 89  EVDDLLG-GGIETQSITEVYGEFGAGKSQVTHQISVTVQLPAEHGGLEGSAIFVDSEDTF 147

Query: 108 DSIYARKL-------------------------------------GVDLKNLLISQPDTG 130
                 ++                                        L  + +++    
Sbjct: 148 RPERIDQMVRGLDDDVLEDTMVLHGIVEEAGDADAGDEELLEALVESVLDKIHVAKAFNS 207

Query: 131 EQALEITDM--------LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
              + + +               V ++ +DS+ A   RAE  G         + + +++ 
Sbjct: 208 NHQILLAEKAQEIASESQDDDFPVRLLCVDSLTAHF-RAEYVGRGE---LADRQQKLNKH 263

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           L  L      +   +V  NQ+       FG P    GGN L   S+ R+ +R+       
Sbjct: 264 LHDLMRVGDLNNTAVVVTNQVAANPDSFFGDPTQPIGGNILGHTSTFRIYLRKSK----- 318

Query: 243 DSITGNQTRVKVVKNKMAS 261
               GN+  VK+V      
Sbjct: 319 ----GNKRIVKLVDAPNLP 333


>gi|284163506|ref|YP_003401785.1| DNA repair and recombination protein RadA [Haloterrigena turkmenica
           DSM 5511]
 gi|284013161|gb|ADB59112.1| DNA repair and recombination protein RadA [Haloterrigena turkmenica
           DSM 5511]
          Length = 343

 Score = 63.7 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 84/275 (30%), Gaps = 57/275 (20%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG---- 95
                I  +S     +D  LG GG     I E+YG   +GK+ +        Q       
Sbjct: 74  ERRNEIGKLSWHIDEVDDLLG-GGIETQSITEVYGEFGAGKSQVTHQMAVNVQLPKEVGG 132

Query: 96  --GTCAFVDAEHALDSIYARKL--------------------------------GVDLKN 121
             G   FVD+E          +                                   L  
Sbjct: 133 LHGCAIFVDSEDTFRPERIDDMVRGLPDEAIDATLEDREIEGSADDEAAVDELVEDVLDK 192

Query: 122 LLISQPDTGEQALEITDM--------LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
           + +++       + + +               V ++ +DS+ A   RAE  G        
Sbjct: 193 IHVAKAFNSNHQMLLAEKAKELAGEHEDSEYPVRLLCVDSLTAHF-RAEYVGRGE---LA 248

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
            + + +++ L  L    +   C ++  NQ+       FG P    GGN L   S+ R+ +
Sbjct: 249 DRQQKLNKHLHDLDKVGNLYNCAVIVTNQVASNPDSFFGDPTQPIGGNILGHKSTFRIYL 308

Query: 234 RRVGSIK------DKDSITGNQTRVKVVKNKMASP 262
           R+    K      D  ++   +  ++V    +   
Sbjct: 309 RKSKGDKRIVRLVDAPNLADGEAVMRVQDGGLKPE 343


>gi|152990802|ref|YP_001356524.1| DNA repair protein RadA [Nitratiruptor sp. SB155-2]
 gi|151422663|dbj|BAF70167.1| DNA repair protein RadA/Sms [Nitratiruptor sp. SB155-2]
          Length = 445

 Score = 63.7 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 54/253 (21%), Positives = 91/253 (35%), Gaps = 26/253 (10%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I+ +S+GS  LD+ LG GG  +G +V + G    GK+TL L T A   K+G    +V 
Sbjct: 63  EKIQRISTGSEELDLVLG-GGLVEGSLVLVGGSPGVGKSTLLLKTCANVAKSGKKVLYVS 121

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AE +   I  R   +D  +  +      E  LE     +++    ++VIDS+  +     
Sbjct: 122 AEESASQIKMRADRIDANHPNLF--LLNELILENIVTQLKTDHYGLLVIDSIQTIYSEEV 179

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
                  S        + +        +++S  + VFI     K G +        G   
Sbjct: 180 TAAPGTVSQVKAVTFELMR--------LAKSMKLPVFIIGHITKEGSI-------AGPRV 224

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV-------EFDIMYGEG 275
           L+      L      S K+   + G + R   +         Q             +  G
Sbjct: 225 LEHMVDTVLYFE-GDSSKEIRMLRGFKNRFGSISEVGIFEMTQRGLISAKDISKRFFQRG 283

Query: 276 ISFFGELIDLGVK 288
            S  G    + ++
Sbjct: 284 SSQVGSAATVVME 296


>gi|126460634|ref|YP_001056912.1| Rad51-like protein [Pyrobaculum calidifontis JCM 11548]
 gi|126250355|gb|ABO09446.1| Rad51-like protein [Pyrobaculum calidifontis JCM 11548]
          Length = 314

 Score = 63.3 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 87/240 (36%), Gaps = 24/240 (10%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           K L+ A+ ++      G    L ++    +   V  +G    D      G  +  I E  
Sbjct: 57  KILQQAIQRV------GTTRPLTARELRSQQRRVFKTGVSEFDEKTPWRGIREAFIYEFA 110

Query: 74  GPESSGKTTLALHTIAQSQKTGGT--CAFVDAEHALD----SIYARKLGVDLKN----LL 123
           G   +GK+ LA      +   G T    ++D E   +       A++ G+D+      ++
Sbjct: 111 GEFGAGKSMLAHQLSVAALAQGFTTRVVYIDTEGTFNDGLVEAVAKRFGLDVDKALEAIV 170

Query: 124 ISQPDTGEQALEITDMLVRSGAVDII---VIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           + QP    Q  +I    +     +     VID++ AL  RAE  G    +    +   + 
Sbjct: 171 VYQPANVVQLEQIVKFDLPRHIAEGCRLAVIDTITALY-RAEFVGREMLAARQQRIHYLV 229

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
             LR+   +   +    V  NQ+   +   F   +   GGN L    + R  + R    K
Sbjct: 230 DWLRRHARTFGLTS---VLTNQVM-DVPEAFSVGKRPAGGNVLAHAVNARFMMARPNKAK 285


>gi|255580560|ref|XP_002531104.1| DNA repair and recombination protein radB, putative [Ricinus
           communis]
 gi|223529300|gb|EEF31269.1| DNA repair and recombination protein radB, putative [Ricinus
           communis]
          Length = 315

 Score = 63.3 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 88/252 (34%), Gaps = 41/252 (16%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GTC 98
              +   V+S+G  G+D  LG GG  +G++ E+ G  SSGKT + L   A   K   G  
Sbjct: 82  DALQNKHVLSTGFDGIDSLLG-GGVREGQLTELVGSSSSGKTQVCLQVAANVAKQHMGRV 140

Query: 99  AFVDAEHALDSIYARKL-----GVDLKNLLISQPDTGE-----------QALEI---TDM 139
            FVD  ++       +      G  L   ++S                   LEI   +  
Sbjct: 141 IFVDTGNSFSPRRIEQFVGRISGSALNQTVMSNILCHSVFDIFSMFDVLHQLEISLRSQG 200

Query: 140 LVRSGAVDIIVIDSVAAL-TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
                 V  +++DS+++L TP     G  G +L              L          ++
Sbjct: 201 HSGDFKVQSLIVDSISSLITPILGGGGSQGHALMTSAG-------ILLKKLAHEHNIAVL 253

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
             N M    G  F        G + K    VRL + R     D+     N   V ++K+ 
Sbjct: 254 VTNHMVAGEGGNF----KPALGESWKSIPHVRLLLSR-----DQGKNVCN---VTILKHP 301

Query: 259 MASPFKQVEFDI 270
             +  K   F +
Sbjct: 302 SQASGKAARFTV 313


>gi|313185547|gb|ADR50338.1| recombinase A [Borrelia burgdorferi]
          Length = 51

 Score = 63.3 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/51 (66%), Positives = 42/51 (82%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G+P+GRI+EI+ PESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   GYPRGRIIEIFAPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAK 51


>gi|169840822|ref|ZP_02873935.1| hypothetical protein cdivTM_26973 [candidate division TM7
          single-cell isolate TM7a]
          Length = 61

 Score = 63.3 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 26 VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           YG+GAIM+LG    +   I  +S+GSL LDIALG+GG  +G ++        GK  L
Sbjct: 1  DYGEGAIMKLGENTKM--NIRAISTGSLNLDIALGVGGVQEGELLRFMEQSLRGKLLL 56


>gi|37955140|gb|AAP76377.1| RecA [Proteus mirabilis]
          Length = 45

 Score = 63.3 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 31/42 (73%), Gaps = 2/42 (4%)

Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGS 52
          +K KAL AAL QI++ +GKG+IM+LG   S+   +E +S+GS
Sbjct: 6  NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--NVETISTGS 45


>gi|257052349|ref|YP_003130182.1| DNA repair and recombination protein RadA [Halorhabdus utahensis
           DSM 12940]
 gi|256691112|gb|ACV11449.1| DNA repair and recombination protein RadA [Halorhabdus utahensis
           DSM 12940]
          Length = 348

 Score = 63.3 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 79/251 (31%), Gaps = 55/251 (21%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG---- 95
              E I  ++ G   +D  LG GG     I E+YG   +GK+ +        Q       
Sbjct: 75  ERREQIGKLTWGVEEVDELLG-GGVETQSITEVYGEFGAGKSQVTHQLAVNVQLPAEHGG 133

Query: 96  --GTCAFVDAEHALDSIYARK------------------------------------LGV 117
             G+  F+D+E         +                                    +  
Sbjct: 134 LEGSSIFIDSEDTFRPERIEQMVEGLEDDVIADTMVLHGVAEEGEADPADDDHFDDLIES 193

Query: 118 DLKNLLISQPDTGEQALEITDM--------LVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
            L  + +++       + + +               V ++ +DS+ A   RAE  G    
Sbjct: 194 ILDKIHVAKAFNSNHQILLAEKAQELASEGQDEEFPVRLLCVDSLTAHF-RAEYVGRGE- 251

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
                + + +++ L  L      +   +V  NQ+       FG P    GGN L   S+ 
Sbjct: 252 --LADRQQKLNKHLHDLMRVGDLNNTAVVVTNQVAANPDSFFGDPTQPIGGNILGHTSTF 309

Query: 230 RLDIRRVGSIK 240
           RL +R+    K
Sbjct: 310 RLYLRKSKGDK 320


>gi|222481028|ref|YP_002567265.1| DNA repair and recombination protein RadA [Halorubrum lacusprofundi
           ATCC 49239]
 gi|222453930|gb|ACM58195.1| DNA repair and recombination protein RadA [Halorubrum lacusprofundi
           ATCC 49239]
          Length = 343

 Score = 63.3 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 83/265 (31%), Gaps = 60/265 (22%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
              E I  +S     +D  LG GG     I E+YG  +SGK+ +        Q       
Sbjct: 74  ERREEIGKLSWQIDEVDDLLG-GGIETQSITEVYGEFASGKSQVTHQMAVNVQLPAEHGG 132

Query: 94  TGGTCAFVDAEHALDSIYARKLGVD--------------------------------LKN 121
             G C FVD+E          +                                   L  
Sbjct: 133 LDGGCIFVDSEDTFRPERIDDMVRGLDDDILADEMERREIEGTPNDEEAMEELIAAFLDQ 192

Query: 122 LLISQPDTGEQALEITDM--------LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
           + +++       + + +               + I+ +DS+ A   RAE  G        
Sbjct: 193 IHVAKAFNSNHQILLAEKAKELAGELEESEWPIRIVCVDSLTAHF-RAEYVGR---GELA 248

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
            + + +++ L  L          ++  NQ+       FG P    GGN L   S+ R+ +
Sbjct: 249 DRQQKLNKHLHDLMRIGDLFNTAILVTNQVASNPDSYFGDPTQAIGGNILGHASTFRMYL 308

Query: 234 RRVGSIKDKDSITGNQTRVKVVKNK 258
           R+           GN+  V++V   
Sbjct: 309 RKSK---------GNKRIVRLVDAP 324


>gi|288559762|ref|YP_003423248.1| DNA repair and recombination protein RadB [Methanobrevibacter
           ruminantium M1]
 gi|288542472|gb|ADC46356.1| DNA repair and recombination protein RadB [Methanobrevibacter
           ruminantium M1]
          Length = 231

 Score = 62.9 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 90/208 (43%), Gaps = 22/208 (10%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99
           S  +  E +S+ S  LD  L  GG  K  I +IYGP   GKT ++L+      ++G    
Sbjct: 5   STMQDYEKISTNSP-LDELL-DGGIDKRTITQIYGPPGVGKTNVSLNIAVNVARSGKKVI 62

Query: 100 FVDAEHALDSIYARKLGVD-----LKNLLISQPDTGEQA---LEITDMLVRSGAVDI--I 149
           ++D E  +     +++  +      KN+++ +P + ++    LE+ +  + S   ++  I
Sbjct: 63  YIDTEGGISVERIKQISGEDFDNVAKNIVVFEPTSFKEQEEDLELIEDWLASNNSEVELI 122

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           V+DS  AL    +            ++ L+ + +++L          ++  NQ+      
Sbjct: 123 VLDSAVALFRVEDD---------KSRSHLLGKQMQQLAKFAVDYDLAVLVTNQIYASFEE 173

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVG 237
                    GG  +++ S + ++++R  
Sbjct: 174 D-SDEMAPVGGTIIQYRSKIIIELKREE 200


>gi|303244742|ref|ZP_07331072.1| DNA repair and recombination protein RadB [Methanothermococcus
           okinawensis IH1]
 gi|302484876|gb|EFL47810.1| DNA repair and recombination protein RadB [Methanothermococcus
           okinawensis IH1]
          Length = 212

 Score = 62.9 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 95/209 (45%), Gaps = 19/209 (9%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD--- 118
           G   +  I +IYGP   GKT + + +     + G    +VD E  L     +++  D   
Sbjct: 8   GNIERKTITQIYGPPGVGKTNIGIISAINFIRKGFKVVYVDTEGGLSIERIKQIAGDEIE 67

Query: 119 --LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
             L NL+I +P++ E+   + + L+    + ++++D +++L  R E+   + E+      
Sbjct: 68  NILNNLIIYEPESFEEQSILLEKLLYIDNLGLVIVDGISSLY-RLELSDKVDENT--RLN 124

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           R++ + +  L ++  +    ++  NQ+         +    TGG  L+++S   + + ++
Sbjct: 125 RILGRQILTLLNTAKKKNLAVLITNQV-----SDTSNGFKATGGKILEYWSKTIIRMEKL 179

Query: 237 GSI------KDKDSITGNQTRVKVVKNKM 259
             +      K + S  G + + K+VK  +
Sbjct: 180 NKLRELILEKHRYSEEGERIKYKIVKKGI 208


>gi|296284105|ref|ZP_06862103.1| DNA repair protein RadA [Citromicrobium bathyomarinum JL354]
          Length = 454

 Score = 62.9 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 78/214 (36%), Gaps = 1/214 (0%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           G G  ++  S     +  E  ++G    D ALG GG   G  + I G    GK+TL L T
Sbjct: 50  GGGRRLEFVSLSDAVKPPERATTGLKEFDRALG-GGLVPGAAILIGGDPGIGKSTLLLQT 108

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
                + GG   +V  E A   +  R   + L +  +    +      +T +  +  A D
Sbjct: 109 AGAIARKGGDVVYVSGEEASAQVRLRAERLGLADAPVRLASSTNVRDILTTLGAQDEAPD 168

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++V+DS+  +            S     A  + +  ++  +++     +    N    ++
Sbjct: 169 LLVVDSIQTMYSDTIEGAPGTVSQVRGCAFELIRYAKERGTALVLVGHVTKDGNIAGPRV 228

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
                    +  G     Y  +R    R G++ +
Sbjct: 229 LEHMVDVVMSFEGERSHQYRILRALKNRFGAVDE 262


>gi|198436503|ref|XP_002123810.1| PREDICTED: similar to Dmc1 homolog [Ciona intestinalis]
          Length = 282

 Score = 62.9 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 71/184 (38%), Gaps = 23/184 (12%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------ 92
            S  + +  VS+GS  LD  LG GG     I E++G   +GKT L+      +Q      
Sbjct: 93  SSKRKQVFKVSTGSEDLDKLLG-GGIESMAITEVFGEFRTGKTQLSHTLSVTTQIPGAKG 151

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSG 144
             GG   ++D E+       R +           L N++ ++  T E  +E+ D +    
Sbjct: 152 YMGGKVVYIDTENTFRPDRLRPIADRFNLDQNAVLDNVMYARAYTSEHQMELLDHVAAKF 211

Query: 145 A-----VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL--TSSISRSKCIL 197
                   ++++DSV AL  R +  G    +    +       + K+  +  +  S+   
Sbjct: 212 HEEAGIFKLLIVDSVMALF-RVDFSGRGELADRQQKLAQGELRIAKIYDSPDMPESEATF 270

Query: 198 VFIN 201
              N
Sbjct: 271 SITN 274


>gi|242398101|ref|YP_002993525.1| DNA repair and recombination protein radB [Thermococcus sibiricus
           MM 739]
 gi|259551847|sp|C6A0N1|RADB_THESM RecName: Full=DNA repair and recombination protein radB
 gi|242264494|gb|ACS89176.1| DNA repair and recombination protein radB [Thermococcus sibiricus
           MM 739]
          Length = 228

 Score = 62.9 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 86/233 (36%), Gaps = 34/233 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +++GS  LD  LG GG  KG + ++YGP ++GKTTLA+     ++   G  A++D E   
Sbjct: 2   LTTGSKNLDALLG-GGIDKGILTQVYGPFATGKTTLAMQIGLLNE---GKVAYIDTEGGF 57

Query: 108 DSI----YARKLGVDLKN------LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
                       G+D  +      +  +     ++        + +    +IV+DS+   
Sbjct: 58  SPERLAKMVESRGMDSNSTLQKFLIFEAFDFKEQKKTISNLKKIVNEKFSMIVVDSITNH 117

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
               E +  M           + + L+ L     +    ++  NQ+         +    
Sbjct: 118 YRVEEKKSSM--------TTDLGKQLQVLLWLARKYNLAVIVTNQVYFDSK---QNALKP 166

Query: 218 TGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
              + + +     L + ++          G +  V + +++       V F+I
Sbjct: 167 LAEHIMGYKCKDILRLEKLR--------PGLRIAV-LERHRFKPEGGIVHFEI 210


>gi|313185513|gb|ADR50321.1| recombinase A [Borrelia burgdorferi]
          Length = 51

 Score = 62.9 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/51 (66%), Positives = 42/51 (82%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G+P+ RI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   GYPRRRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAK 51


>gi|313185365|gb|ADR50247.1| recombinase A [Borrelia burgdorferi]
 gi|313185367|gb|ADR50248.1| recombinase A [Borrelia burgdorferi]
 gi|313185369|gb|ADR50249.1| recombinase A [Borrelia burgdorferi]
 gi|313185371|gb|ADR50250.1| recombinase A [Borrelia burgdorferi]
 gi|313185373|gb|ADR50251.1| recombinase A [Borrelia burgdorferi]
 gi|313185375|gb|ADR50252.1| recombinase A [Borrelia burgdorferi]
 gi|313185377|gb|ADR50253.1| recombinase A [Borrelia burgdorferi]
 gi|313185379|gb|ADR50254.1| recombinase A [Borrelia burgdorferi]
 gi|313185381|gb|ADR50255.1| recombinase A [Borrelia burgdorferi]
 gi|313185383|gb|ADR50256.1| recombinase A [Borrelia burgdorferi]
 gi|313185385|gb|ADR50257.1| recombinase A [Borrelia burgdorferi]
 gi|313185387|gb|ADR50258.1| recombinase A [Borrelia burgdorferi]
 gi|313185389|gb|ADR50259.1| recombinase A [Borrelia burgdorferi]
 gi|313185391|gb|ADR50260.1| recombinase A [Borrelia burgdorferi]
 gi|313185393|gb|ADR50261.1| recombinase A [Borrelia burgdorferi]
 gi|313185395|gb|ADR50262.1| recombinase A [Borrelia burgdorferi]
 gi|313185397|gb|ADR50263.1| recombinase A [Borrelia burgdorferi]
 gi|313185399|gb|ADR50264.1| recombinase A [Borrelia burgdorferi]
 gi|313185401|gb|ADR50265.1| recombinase A [Borrelia burgdorferi]
 gi|313185403|gb|ADR50266.1| recombinase A [Borrelia burgdorferi]
 gi|313185405|gb|ADR50267.1| recombinase A [Borrelia burgdorferi]
 gi|313185407|gb|ADR50268.1| recombinase A [Borrelia burgdorferi]
 gi|313185409|gb|ADR50269.1| recombinase A [Borrelia burgdorferi]
 gi|313185411|gb|ADR50270.1| recombinase A [Borrelia burgdorferi]
 gi|313185413|gb|ADR50271.1| recombinase A [Borrelia burgdorferi]
 gi|313185415|gb|ADR50272.1| recombinase A [Borrelia burgdorferi]
 gi|313185417|gb|ADR50273.1| recombinase A [Borrelia burgdorferi]
 gi|313185419|gb|ADR50274.1| recombinase A [Borrelia burgdorferi]
          Length = 51

 Score = 62.9 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/51 (68%), Positives = 43/51 (84%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G+P+GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   GYPRGRIIEIFGPESSGKTTLILQAIAEVQKEGGIAAFIDAEHALDPVYAK 51


>gi|256017145|ref|NP_001157742.1| DNA repair protein RAD51 homolog 1 isoform 3 [Homo sapiens]
 gi|297696338|ref|XP_002825353.1| PREDICTED: DNA repair protein RAD51 homolog 1-like isoform 4 [Pongo
           abelii]
 gi|119612838|gb|EAW92432.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae), isoform
           CRA_b [Homo sapiens]
 gi|164506989|gb|ABY59731.1| Rad51 variant [Homo sapiens]
          Length = 280

 Score = 62.6 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 56/166 (33%), Gaps = 19/166 (11%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              I  +++GS  LD  L  GG   G I E++G   +GKT +        Q         
Sbjct: 96  RSEIIQITTGSKELDKLL-QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGE 154

Query: 96  GTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQA---LEITDMLVRSG 144
           G   ++D E          +           L N+  ++    +     L     ++   
Sbjct: 155 GKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVES 214

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
              ++++DS  AL  R +  G    S   M      + L +L   I
Sbjct: 215 RYALLIVDSATALY-RTDYSGRGELSARQMHLARFLRMLLRLADEI 259


>gi|313185479|gb|ADR50304.1| recombinase A [Borrelia burgdorferi]
          Length = 51

 Score = 62.6 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 35/51 (68%), Positives = 43/51 (84%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G+P+GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   GYPRGRIIEIFGPESSGKTTLTLKAIAEVQKEGGIAAFIDAEHALDPVYAK 51


>gi|126459376|ref|YP_001055654.1| Fis family transcriptional regulator [Pyrobaculum calidifontis JCM
           11548]
 gi|126249097|gb|ABO08188.1| transcriptional regulator, Fis family [Pyrobaculum calidifontis JCM
           11548]
          Length = 312

 Score = 62.6 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 82/240 (34%), Gaps = 24/240 (10%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           K L+ A+ ++      G    + ++    +      +G    D      G  +  I E  
Sbjct: 55  KILQQAIQRV------GTTRPMTARELRTQQRRAFKTGVSEFDEKTPWRGIREAFIYEFA 108

Query: 74  GPESSGKTTLALHTIAQSQKTGGT--CAFVDAEHALDSIYARKLGVD--------LKNLL 123
           G   +GK+ LA      +   G T    ++D E   +      +           L+ ++
Sbjct: 109 GEFGAGKSMLAHQLSVAALAQGFTTRVVYIDTEGTFNDGLVEAVAKRFNFDADKALEAIV 168

Query: 124 ISQPDTGEQALEITDMLVRSGAVDII---VIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           + QP    Q  +I    +     +     VID++ AL  RAE  G    +    +   + 
Sbjct: 169 VYQPANVVQLEQIVKFDLPRHIAEGCRLAVIDTITALY-RAEFVGREMLAARQQRIHYLV 227

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
             LR+   +   +    V  NQ+   +   F   +   GGN L    + R  + R    K
Sbjct: 228 DWLRRHARTFGLTS---VLTNQVM-DVPEAFSVGKRPAGGNVLAHAVNARFMMSRPNKAK 283


>gi|326435196|gb|EGD80766.1| hypothetical protein PTSG_01354 [Salpingoeca sp. ATCC 50818]
          Length = 366

 Score = 62.6 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 72/214 (33%), Gaps = 32/214 (14%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH-----TIAQSQKTGGT 97
           E    + +    LD  L  GG P G I E+ GP   GKT   +       +  +    G 
Sbjct: 74  ERKRFLPTTLPTLDRNLA-GGLPIGMITEVAGPSGCGKTQFCMMMTSVAAVGVNGHEPGG 132

Query: 98  CAFVDAEHALDSIYARK------------------LGVDLKNLLISQPDTGEQALEITDM 139
             ++D E +  +                       +   ++ +         + LE  D+
Sbjct: 133 VLYLDTEGSFSNKRLVAMASQRFPVQLATNEALVDMSKRIQVITTKTSAELLRVLETLDV 192

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
            +      ++++DS A+L  R E +G+  E     +  ++++    L          ++ 
Sbjct: 193 RIVEMKARLVILDSAASLL-RKEYQGNQQE-----RRDVLAREATLLKRWAQTYAIPVLV 246

Query: 200 INQMRMKIGVMFGSPETTTG--GNALKFYSSVRL 231
            NQ+  +     G     T   GN      + RL
Sbjct: 247 TNQVTTRFDDNQGGDAFVTAALGNTWAHSVNTRL 280


>gi|313185471|gb|ADR50300.1| recombinase A [Borrelia burgdorferi]
 gi|313185473|gb|ADR50301.1| recombinase A [Borrelia burgdorferi]
 gi|313185475|gb|ADR50302.1| recombinase A [Borrelia burgdorferi]
 gi|313185477|gb|ADR50303.1| recombinase A [Borrelia burgdorferi]
          Length = 51

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/51 (70%), Positives = 43/51 (84%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G+P+GRI+EI+GPESSGKTTL L  IA+ QK GG  AF+DAEHALD IYA+
Sbjct: 1   GYPRGRIIEIFGPESSGKTTLTLKAIAEVQKEGGIAAFIDAEHALDPIYAK 51


>gi|255728639|ref|XP_002549245.1| meiotic recombination protein DMC1 [Candida tropicalis MYA-3404]
 gi|240133561|gb|EER33117.1| meiotic recombination protein DMC1 [Candida tropicalis MYA-3404]
          Length = 221

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 74/220 (33%), Gaps = 31/220 (14%)

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKLGVD-- 118
             I E++G    GKT L       +Q         G  A++D E        R +     
Sbjct: 1   MSITEVFGEFRCGKTQLCHTLCVAAQLPRDMGGAEGRVAYIDTEGTFRPDRIRSIAERYG 60

Query: 119 ------LKNLLISQPDTGEQALEITD---MLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
                 L+N+  ++    E  +E+ +        G   ++++DS+ A           G 
Sbjct: 61  VDPDTCLENISYARALNSEHQIELVEQLGHEFAEGTFRLLIVDSIMACFR----VDFSGR 116

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE----TTTGGNALKF 225
                + + ++Q L  LT         +   NQ++   G              GG+ L  
Sbjct: 117 GELNERQQKLNQHLSNLTRVAEDYNIAVFLTNQVQSDPGASSLFAAADGRKPVGGHVLAH 176

Query: 226 YSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259
            S+ R+ +R      RV  ++D  ++   +    +    +
Sbjct: 177 ASATRILLRKGRGEERVAKLQDSPNMPEKECVYVIGNGGI 216


>gi|115399870|ref|XP_001215524.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114191190|gb|EAU32890.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 381

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 88/250 (35%), Gaps = 49/250 (19%)

Query: 47  VVSSGSLGLDIAL--------------GIGGFPKGRIVEIYGPESSGKTTLALHTIAQS- 91
            +S+G   LD A+                 G P+G + E++GP   GKT+LAL     + 
Sbjct: 36  AISTGIPRLDEAICPRSTDETASDSVPATKGIPRGHVTEVFGPPGVGKTSLALSLACNAL 95

Query: 92  QKTG-GTCAFVDAEHALDSIYARKL--------------GVDLKNLLISQPDTGEQALEI 136
           Q+ G G   ++D    L     R++                   NL+  +  T    L +
Sbjct: 96  QEEGPGKVVWIDTGSPLPRPRLREMLLKSTNKTSSKQTPDDLANNLVYLRAPTLPHLLAL 155

Query: 137 TDML---VRSGAVDIIVIDSVAALTP-----RAEIEGDMGESLPGMQARL---------- 178
                         +++IDS +AL P      +E+   + +S    +A++          
Sbjct: 156 ILHPPQDFPPEETKLLIIDSASALFPPYFPNPSELRARLAQSKVTDKAQIHWLTNRKWNV 215

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT-GGNALKFYSSVRLDIRRVG 237
           +S+    L    +  +  ++ +NQ   KI     +       G A +     R+ +    
Sbjct: 216 LSELASSLVRLATTRRLAVLTVNQAHTKIRGHPRATLCPVLAGGAWEASVYTRIVLYWDF 275

Query: 238 SIKDKDSITG 247
           S  D +   G
Sbjct: 276 STGDGEDADG 285


>gi|299753890|ref|XP_001833605.2| Rad51B protein [Coprinopsis cinerea okayama7#130]
 gi|298410510|gb|EAU88150.2| Rad51B protein [Coprinopsis cinerea okayama7#130]
          Length = 451

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 78/195 (40%), Gaps = 29/195 (14%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH---TIAQSQKTGGT---CA 99
           EV+S+G   LD ALG GG   G + EI G  ++GK+ LAL     +    + GG      
Sbjct: 59  EVLSTGDAYLDHALG-GGIRTGMVWEIVGESAAGKSQLALQLSLFVQNPPELGGIHGAAC 117

Query: 100 FVDAEHALDSIYARKL----------GVDLKNLLISQPDTGEQALE---------ITDML 140
           ++     L +    ++            DL ++   + +T               I    
Sbjct: 118 YLTTSSKLPTSRLSQMLQSNENLSKDSCDLAHVHTIRVNTTPMLTNVLMNLLPNFIQQQQ 177

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
             S  V ++VID++A L    E    M ++    +++ ++Q    L +  +R    +V +
Sbjct: 178 TTSHPVKLLVIDALAELFRSTE---KMSKTTLFDRSKELNQLALDLHALATRHNIAVVVL 234

Query: 201 NQMRMKIGVMFGSPE 215
           N++  +      S +
Sbjct: 235 NEVIDRFERGRLSSK 249


>gi|183227669|dbj|BAG24499.1| rad57 [Coprinopsis cinerea]
          Length = 470

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 78/195 (40%), Gaps = 29/195 (14%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH---TIAQSQKTGGT---CA 99
           EV+S+G   LD ALG GG   G + EI G  ++GK+ LAL     +    + GG      
Sbjct: 78  EVLSTGDAYLDHALG-GGIRTGMVWEIVGESAAGKSQLALQLSLFVQNPPELGGIHGAAC 136

Query: 100 FVDAEHALDSIYARKL----------GVDLKNLLISQPDTGEQALE---------ITDML 140
           ++     L +    ++            DL ++   + +T               I    
Sbjct: 137 YLTTSSKLPTSRLSQMLQSNENLSKDSCDLAHVHTIRVNTTPMLTNVLMNLLPNFIQQQQ 196

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
             S  V ++VID++A L    E    M ++    +++ ++Q    L +  +R    +V +
Sbjct: 197 TTSHPVKLLVIDALAELFRSTE---KMSKTTLFDRSKELNQLALDLHALATRHNIAVVVL 253

Query: 201 NQMRMKIGVMFGSPE 215
           N++  +      S +
Sbjct: 254 NEVIDRFERGRLSSK 268


>gi|238013132|gb|ACR37601.1| unknown [Zea mays]
          Length = 298

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 71/222 (31%), Gaps = 31/222 (13%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-GGTC 98
            + E   V+ +G  G+D  LG GG  +G++ E+ GP SSGKT + LH+ + +     G  
Sbjct: 54  DVTENKHVLPTGLEGIDRLLG-GGLRQGQLTEVTGPSSSGKTQVCLHSASHAPVKHTGVV 112

Query: 99  AFVDAEHALDSIY---------------------ARKLGVDLKNLLISQPDTGEQALEIT 137
            ++D  ++                            +L   +++++           E+ 
Sbjct: 113 MYLDTSNSFSPSRIATIIDGTNDLSDQKGFDLLSKERLKTVMQSIICESVFDIFGMFEVL 172

Query: 138 DMLVRSGAVDIIVIDSVAALT----PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
             L  S   + ++ D            + +   +          +M      L       
Sbjct: 173 HQLEVSLLNEKVIGDGRRICLLIIDSISSLLAPIIGGKYPQGRSMMISLAMILKKLAYEH 232

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
              ++  N M                G + K    VRL I R
Sbjct: 233 NLAVLVTNHMV----SAGNGAVKPALGESWKSVPHVRLMISR 270


>gi|313185421|gb|ADR50275.1| recombinase A [Borrelia burgdorferi]
 gi|313185423|gb|ADR50276.1| recombinase A [Borrelia burgdorferi]
 gi|313185425|gb|ADR50277.1| recombinase A [Borrelia burgdorferi]
 gi|313185427|gb|ADR50278.1| recombinase A [Borrelia burgdorferi]
 gi|313185429|gb|ADR50279.1| recombinase A [Borrelia burgdorferi]
          Length = 51

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/51 (66%), Positives = 42/51 (82%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G+P+GRI+EI+ PESSGKTTL L  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   GYPRGRIIEIFSPESSGKTTLTLQAIAEVQKEGGMAAFIDAEHALDPVYAK 51


>gi|47222497|emb|CAG13017.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 351

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 77/254 (30%), Gaps = 38/254 (14%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            I  +S+GS  LD  L  GG   G I E++G   +GKT L        Q         G 
Sbjct: 97  EIIQISTGSKELDKLL-QGGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGK 155

Query: 98  CAFVDAEHALDSIYARKL-----------------GVDLKNLLISQPDTGEQA---LEIT 137
             ++D E          +                    L N+  ++    +     L   
Sbjct: 156 AMYIDTEGTFRPERLLAVAERRVSGRSLAVYGLVGSDVLDNVAYARAFNTDHQTQLLYQA 215

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDM----GESLPGMQARLMSQALRKLTSSISRS 193
             ++      ++++DS  AL  R +  G +    G++  G       + + + +      
Sbjct: 216 SAMMAESRYALLIVDSATALY-RTDYSGRVWRRCGDNQSGGGTGRRGRHVFRRSQETHWR 274

Query: 194 KCILVFINQMRMKIGVM--FGSPETTTGGNALKFYSSVRLDIRRVG----SIKDKDSITG 247
           +            +     +G  E T+    L  ++   L   R       I D   +  
Sbjct: 275 QHSGSRFYHPVSGVFKTCGYGITEETSEFVQLVLFAVCTLRKGRGETRICKIYDSPCLPE 334

Query: 248 NQTRVKVVKNKMAS 261
            +    +  + +  
Sbjct: 335 AEAMFAINADGVGD 348


>gi|147921438|ref|YP_684747.1| RecA family ATPase [uncultured methanogenic archaeon RC-I]
 gi|110620143|emb|CAJ35421.1| predicted RecA-family ATPase [uncultured methanogenic archaeon
           RC-I]
          Length = 241

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 14/169 (8%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VS+G   LD  +  GG+P+G+ V + G   SGKT +A+H I +  + G  C ++  E
Sbjct: 1   MERVSTGIDELDQFIS-GGYPRGKSVLVTGTPGSGKTIIAIHFIYRGCQDGKKCVYIATE 59

Query: 105 HALDSIY--ARKLGVDLKNLLIS-----------QPDTGEQALEITDMLVRSGAVDIIVI 151
             L+ I   A  +G D++    S           +  T  Q + +    + S   DII +
Sbjct: 60  EELEDILHQAESIGRDIRPFYESGQLKIIKLYEERAYTTIQTMSLGFEKIDSLQSDIISL 119

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
                      +  ++G     M      + L  L   + +     ++I
Sbjct: 120 VEKIPGETDLVVIDNLGVFTLNMSMDEFRKQLDTLNLLLGKQHYTSLYI 168


>gi|2459511|gb|AAC45677.1| RecA [Bifidobacterium animalis]
 gi|2459513|gb|AAC45678.1| RecA [Bifidobacterium bifidum]
          Length = 78

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 55/78 (70%), Positives = 70/78 (89%)

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD  +L++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEGDMG+S  G+Q
Sbjct: 1   GVDTDSLIVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGDMGDSHVGLQ 60

Query: 176 ARLMSQALRKLTSSISRS 193
           ARLMSQALRK+T +++++
Sbjct: 61  ARLMSQALRKMTGALAQA 78


>gi|197092365|gb|ACH42255.1| RAD51D protein [Triticum aestivum]
          Length = 246

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 88/259 (33%), Gaps = 37/259 (14%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           MQL    +  EG   + +G  G+D  LG GG  KG++ EI G  SSGKT + L++ A   
Sbjct: 1   MQLLKDAA--EGKHFLPTGLEGIDTLLG-GGLRKGQLTEITGQSSSGKTQVCLYSAAHVA 57

Query: 93  KTG-GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
               G   ++D  ++        +  +L   LI +P        ++ ++  S      + 
Sbjct: 58  ARHMGAVLYLDTSNSFSPSRIAHILDELPISLIKEPKDMRLKRVMSSIICESVFDIFALF 117

Query: 152 DSVAALTPRAEIEGDMGESLPG--------------------MQARLMSQALRKLTSSIS 191
           + +  L      +   G +                           +M      L     
Sbjct: 118 EVLDRLEVSLNCKVTNGSNKICLLIIDSVSSLLAPIIGGKNSQGRSMMISVAMILKKLAH 177

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +    ++  N M     V          G + K    +RL I R     D+ S     T 
Sbjct: 178 KHNLSVLVTNHM-----VAGNGAPKPALGESWKAAPHIRLMISR-----DRGSNICTATT 227

Query: 252 VKVVKNKMASPFKQVEFDI 270
           +K   + + +  + ++F  
Sbjct: 228 LK---HTLLACGRHMKFQF 243


>gi|415252|gb|AAA26966.1| DNA repair protein [Streptococcus gordonii]
          Length = 71

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/71 (67%), Positives = 59/71 (83%)

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F+DAEHALD  YA  LGV++  LL+SQPD+GEQ LEI   L+ SGAVD++VIDSVAAL P
Sbjct: 1   FIDAEHALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVP 60

Query: 160 RAEIEGDMGES 170
           RAEI+GD+G+S
Sbjct: 61  RAEIDGDIGDS 71


>gi|170071670|ref|XP_001869974.1| RAD51D [Culex quinquefasciatus]
 gi|167867650|gb|EDS31033.1| RAD51D [Culex quinquefasciatus]
          Length = 323

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 90/252 (35%), Gaps = 32/252 (12%)

Query: 19  ALSQIQRVY---GKGAIMQLGSQ-GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
            LS I+R +     G  +++G     + E I+ + +G  GLD  L  GG   G ++E++G
Sbjct: 51  VLSAIKRDFMTRCSGTTVRVGEYFQYLGELIDPIPTGVRGLDALL-QGGLLPGHVLEVFG 109

Query: 75  PESSGKTTLALHTIAQSQKTGG----TCAFVDAEHALDSIYARKL-----------GVDL 119
             + GK+ L +   A     G        +VD +    +   + +              +
Sbjct: 110 EPACGKSQLCMTIAANVASRGAADPVDVFYVDTKCDFSASRVQSMLLAGKCSEEEAREAM 169

Query: 120 KNLLISQPDTGEQALEITDMLVRS-------GAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           + + + +  + E  L   + ++         G   ++++DS+ AL            S  
Sbjct: 170 QRIKVERIHSPEHLLGTVEEMLAQIDQEERFGKFRVLLVDSLPALW-----YAHQNSSSS 224

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
                +++     L    S +   +V +N   +              G   +   + RL 
Sbjct: 225 CYPVGMLTSLAGLLRKLASENMIAVVVVNLRIVSTDSGQQRVTQPALGRYWEMVPTTRLL 284

Query: 233 IRRVGSIKDKDS 244
           + ++ S  +  +
Sbjct: 285 MSKLDSGDNGQN 296


>gi|21229110|ref|NP_635032.1| putative resolvase/recombinase [Methanosarcina mazei Go1]
 gi|20907667|gb|AAM32704.1| putative resolvase/recombinase [Methanosarcina mazei Go1]
          Length = 238

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 78/209 (37%), Gaps = 18/209 (8%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E + +G  GLD+ +  GG+P+G+ + + GP  SGKT L LH + +S + G  C  V   
Sbjct: 1   MENLPTGVEGLDLLM-DGGYPRGKSILVTGPPGSGKTILGLHFLHRSCQDGRKCILVLTR 59

Query: 105 HALDSIYARK--LGVDLKNLLIS----------QPDTGEQALEITDMLVRSGAVDIIVID 152
              + +  +   LG+ L   + S                +++      + +   DII   
Sbjct: 60  ELTEDVLTQAHSLGIGLDPFIESGQLNIRNIFEDKINKIKSVSKFGKGLCAVDTDIIEYL 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           S  +      +  ++G        R  +     ++  + ++ C  +F+          + 
Sbjct: 120 SSMSTEVDVVVIDNIGVMAINHDIREFADEFSSISIILLKNGCTSLFV-----MDEDSYN 174

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKD 241
           + +  TG         +  +    G  K 
Sbjct: 175 TTQRLTGYMVFGLMRLITQENFISGKTKQ 203


>gi|50555670|ref|XP_505243.1| YALI0F10307p [Yarrowia lipolytica]
 gi|49651113|emb|CAG78050.1| YALI0F10307p [Yarrowia lipolytica]
          Length = 421

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 68/186 (36%), Gaps = 24/186 (12%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ----- 92
                  ++ +S+G   +D  +  GGFP G + E+ G  ++GK+   L      Q     
Sbjct: 81  DSERERPLDAISTGVRKIDTVMN-GGFPTGTLCEVAGESAAGKSHFLLQLCVNVQLARGE 139

Query: 93  -KTGGTCAFVDAEHALDSIYARKL----------GVDLKNLLISQPDTGEQALEITDMLV 141
              G    F+  E  L++    ++           + L ++        EQ   +    +
Sbjct: 140 GGLGKKAVFISTESGLETRRLVQMMDHVIKLGHDNISLHHVSFIACKDLEQQDRVFQYNL 199

Query: 142 RSGAVD----IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
            +   D    ++VIDS+AA     E+      S    +   + + L  L     +    +
Sbjct: 200 PNLLEDSSYGLVVIDSLAAHYRSEELTSKGDFSSRDKR---LLRTLHHLKGLARKHNVAV 256

Query: 198 VFINQM 203
           VF NQ+
Sbjct: 257 VFANQI 262


>gi|242281112|ref|YP_002993241.1| DNA repair protein RadA [Desulfovibrio salexigens DSM 2638]
 gi|242124006|gb|ACS81702.1| DNA repair protein RadA [Desulfovibrio salexigens DSM 2638]
          Length = 439

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 7/124 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E  E  S+G   LD  LG G  P G ++ + G    GK+TL L   A+  + G    + 
Sbjct: 61  VEHTEARSTGFKPLDTVLGKGFVPGGAVL-VGGEPGIGKSTLLLQLAAEQCRMGNKAVYF 119

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT- 158
             E +L  I  R  +LGV    L+       E+AL I +        D+++IDSV  LT 
Sbjct: 120 SGEESLAQIRGRADRLGVLQSGLMAVASTNAEEALSILEAP---EKPDLMIIDSVQTLTS 176

Query: 159 PRAE 162
           PRA+
Sbjct: 177 PRAD 180


>gi|2459509|gb|AAC45676.1| RecA [Bifidobacterium adolescentis]
 gi|2459515|gb|AAC45679.1| RecA [Bifidobacterium breve]
 gi|2459521|gb|AAC45682.1| RecA [Bifidobacterium sp.]
 gi|2459525|gb|AAC45684.1| RecA [Bifidobacterium sp.]
          Length = 78

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 54/78 (69%), Positives = 70/78 (89%)

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD  +L++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+Q
Sbjct: 1   GVDTDSLIVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQ 60

Query: 176 ARLMSQALRKLTSSISRS 193
           ARLMSQALRK+T +++++
Sbjct: 61  ARLMSQALRKMTGALAQA 78


>gi|2459517|gb|AAC45680.1| RecA [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|2459519|gb|AAC45681.1| RecA [Bifidobacterium longum]
 gi|2459527|gb|AAC45685.1| RecA [Bifidobacterium sp.]
          Length = 79

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 54/78 (69%), Positives = 70/78 (89%)

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD  +L++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+Q
Sbjct: 1   GVDTDSLIVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQ 60

Query: 176 ARLMSQALRKLTSSISRS 193
           ARLMSQALRK+T +++++
Sbjct: 61  ARLMSQALRKMTGALAQA 78


>gi|2459523|gb|AAC45683.1| RecA [Bifidobacterium sp.]
          Length = 77

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 54/77 (70%), Positives = 69/77 (89%)

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           GVD  +L++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S  G+Q
Sbjct: 1   GVDTDSLIVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQ 60

Query: 176 ARLMSQALRKLTSSISR 192
           ARLMSQALRK+T ++++
Sbjct: 61  ARLMSQALRKMTGALAQ 77


>gi|68490817|ref|XP_710777.1| hypothetical protein CaO19.11244 [Candida albicans SC5314]
 gi|46432020|gb|EAK91529.1| hypothetical protein CaO19.11244 [Candida albicans SC5314]
          Length = 220

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 78/222 (35%), Gaps = 31/222 (13%)

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKLGVD-- 118
             I E++G    GKT L       +Q         G  A++D E        R +     
Sbjct: 1   MSITEVFGEFRCGKTQLCHTLCVAAQLPTDMGGGEGRVAYIDTEGTFRPDRIRSIAERYG 60

Query: 119 ------LKNLLISQPDTGEQALEITDMLVR---SGAVDIIVIDSVAALTPRAEIEGDMGE 169
                 L+N+  ++    E  +E+ + L      G   ++++DS+ A   R +  G    
Sbjct: 61  VDADTCLENISYARALNSEHQIELVEQLSNELAEGTFRLLIVDSIMACF-RVDYSGRGE- 118

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE----TTTGGNALKF 225
                + + ++Q L  LT         +   NQ++   G              GG+ L  
Sbjct: 119 --LNERQQKLNQHLSNLTRVAEDYNIAVFLTNQVQSDPGASALFAAADGRKPVGGHVLAH 176

Query: 226 YSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
            S+ R+ +R      RV  ++D  ++   +    + +  +  
Sbjct: 177 ASATRILLRKGRGEERVAKLQDSPNMPEKECVYVIGEGGIKD 218


>gi|226530282|ref|NP_001149161.1| LOC100282783 [Zea mays]
 gi|195625178|gb|ACG34419.1| DNA repair protein RAD51 [Zea mays]
          Length = 298

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 71/222 (31%), Gaps = 31/222 (13%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GTC 98
            + E   V+ +G  G+D  LG GG  +G++ E+ GP SSGKT + LH+ + +     G  
Sbjct: 54  DVTENKHVLPTGLEGIDRLLG-GGLRQGQLTEVTGPSSSGKTQVCLHSASHAPVKHMGVV 112

Query: 99  AFVDAEHALDSIY---------------------ARKLGVDLKNLLISQPDTGEQALEIT 137
            ++D  ++                            +L   +++++           E+ 
Sbjct: 113 MYLDTTNSFSPSRIATIIDGTNDLSDRKGFDLLSKERLKTVMQSIICESVFDIFGMFEVL 172

Query: 138 DMLVRSGAVDIIVIDSVAALT----PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
             L  S   + ++ D            + +   +          +M      L       
Sbjct: 173 HQLEVSLLNEKVIGDGRRICLLIIDSISSLLAPIIGGKYPQGRSMMISLAMILKKLAYEH 232

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
              ++  N M                G + K    VRL I R
Sbjct: 233 NLAVLVTNHMV----SAGNGAVKPALGESWKSVPHVRLMISR 270


>gi|82569454|gb|ABB83369.1| DMC1-like protein [Pleurodeles waltl]
          Length = 211

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 70/206 (33%), Gaps = 26/206 (12%)

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDT 129
           S    +          TGG   F+D E+       R +           L N+L ++  T
Sbjct: 7   SHTLCVTAQLPGTDGYTGGKVIFIDTENTFRPDRLRDIADRFSVDHDAVLDNVLYARAYT 66

Query: 130 GEQALEITDMLVRSGA-----VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
            E  +E+ D +            ++VIDS+ AL          G      + + ++Q L 
Sbjct: 67  SEHQMELLDYVAAKFHEEAGIFKLLVIDSIMALFR----VDFSGRGELAERQQKLAQMLA 122

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMF---GSPETTTGGNALKFYSSVRLDIR------R 235
           +L          +   NQM    G        P+   GG+ L   S+ R+ +R      R
Sbjct: 123 RLQKISEEYNVAVFMTNQMTADPGAAMSFQTDPKKPIGGHILAHASTTRISLRKGRGELR 182

Query: 236 VGSIKDKDSITGNQTRVKVVKNKMAS 261
           +  I D   +  N+    +    ++ 
Sbjct: 183 IAKIYDSPDMPENEATFAITTGGISD 208


>gi|68490790|ref|XP_710790.1| hypothetical protein CaO19.3760 [Candida albicans SC5314]
 gi|46432034|gb|EAK91542.1| hypothetical protein CaO19.3760 [Candida albicans SC5314]
          Length = 220

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 76/222 (34%), Gaps = 31/222 (13%)

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKLGVD-- 118
             I E++G    GKT L       +Q         G  A++D E        R +     
Sbjct: 1   MSITEVFGEFRCGKTQLCHTLCVAAQLPTDMGGGEGRVAYIDTEGTFRPDRIRSIAERYG 60

Query: 119 ------LKNLLISQPDTGEQALEITDM---LVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
                 L+N+  ++    E  +E+ +     +  G   ++++DS+ A           G 
Sbjct: 61  VDADTCLENISYARALNSEHQIELVEQLGNELAEGTFRLLIVDSIMACFR----VDYSGR 116

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE----TTTGGNALKF 225
                + + ++Q L  LT         +   NQ++   G              GG+ L  
Sbjct: 117 GELNERQQKLNQHLSNLTRVAEDYNIAVFLTNQVQSDPGASALFAAADGRKPVGGHVLAH 176

Query: 226 YSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
            S+ R+ +R      RV  ++D  ++   +    + +  +  
Sbjct: 177 ASATRILLRKGRGEERVAKLQDSPNMPEKECVYVIGEGGIKD 218


>gi|323348906|gb|EGA83143.1| Rad51p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 296

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 18/129 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++GS  LD  LG GG   G I E++G   +GK+ L        Q         G C +
Sbjct: 159 CLTTGSKNLDTLLG-GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLY 217

Query: 101 VDAEHALDSIY----ARKLGVDLK----NLLISQPDTGEQALEI---TDMLVRSGAVDII 149
           +D E     +     A++ G+D      N+  ++    +  L +      ++      +I
Sbjct: 218 IDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLI 277

Query: 150 VIDSVAALT 158
           V+DSV AL 
Sbjct: 278 VVDSVMALY 286


>gi|315651279|ref|ZP_07904307.1| DNA repair protein RadA [Eubacterium saburreum DSM 3986]
 gi|315486431|gb|EFU76785.1| DNA repair protein RadA [Eubacterium saburreum DSM 3986]
          Length = 454

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 81/228 (35%), Gaps = 12/228 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E  +   +G   LD  LG GG  +G +V + G    GK+TL L        +     ++
Sbjct: 65  LEEEDRFHTGFEELDRVLG-GGVVRGSLVLVGGDPGIGKSTLLLQVCKNISDSKKKVLYI 123

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
             E +L  I  R     + ++  +     E  L I    V S   D++VIDS+  +    
Sbjct: 124 SGEESLKQIKMRA--KRIGDITENLSFLCETNLNIIKETVFSEKPDVVVIDSIQTMFNEE 181

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
                   S       L+ Q        + +   I +FI     K G + G        +
Sbjct: 182 VASAPGSVSQVRESTNLLMQ--------VGKENNIAIFIVGHVTKEGQVAGPRVLEHMVD 233

Query: 222 ALKFYSSVRLDIRRV-GSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
            + ++   R    R+  ++K++   T      ++ +  +       EF
Sbjct: 234 TVLYFEGDRFASYRILRAVKNRFGSTNEIGVFEMQQAGLIEVKNPSEF 281


>gi|313185433|gb|ADR50281.1| recombinase A [Borrelia burgdorferi]
          Length = 51

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/51 (66%), Positives = 43/51 (84%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G+P+GRI+EI+G ESSGKTTL L +IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   GYPRGRIIEIFGTESSGKTTLTLQSIAEVQKEGGIAAFIDAEHALDPVYAK 51


>gi|291336910|gb|ADD96439.1| recombination protein A [uncultured organism MedDCM-OCT-S09-C426]
          Length = 216

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 97/222 (43%), Gaps = 18/222 (8%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIE-VVSSGSLGLDIAL 59
           M  RKE  + D S  L+    QI+    + A    G   +  E  +  VSSGSL LDI +
Sbjct: 1   MRKRKEDKVSDSSSPLQ----QIESYLKQNA----GDHYNYEEERDYSVSSGSLTLDIEM 52

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFVDAEHALDSIYARK--LG 116
           G GG   G I+   G    GKT+ AL      Q        ++ +E  L     R+  L 
Sbjct: 53  G-GGIKPG-IIRASGVAEGGKTSCALSFARNFQKMKNSMVVYIKSEGRLSKEMIRRSGLS 110

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVD---IIVIDSVAALTPRAEIEGDMGESL-P 172
            D  +  + + +  E  +++   LV+    D   + +IDS+ AL PR ++E    E++  
Sbjct: 111 TDPNSWFVVKSNVYETVIDLIRQLVKDNPTDTRYMFIIDSMDALVPRGDLEKSANEAIKV 170

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
              A L S  L+++   ++    I   I+Q+R K+ +     
Sbjct: 171 AGGALLSSDFLKRMALGLASRGHICFMISQVRSKVSINPYEK 212


>gi|220917438|ref|YP_002492742.1| hypothetical protein A2cp1_2338 [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219955292|gb|ACL65676.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 228

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            V SG   +D AL  GGFP+G + E+ G  +SGKT +AL  +A         A+VD    
Sbjct: 31  CVPSGLPEVDAALPGGGFPRGALCELAGGPASGKTAVALSLVAGLGPED-LSAWVDVRGD 89

Query: 107 LDSIYARKLGVDLKNLLISQPDT 129
           L    A   GVDL  LL+ +P T
Sbjct: 90  LYPPAAAARGVDLARLLVVRPAT 112


>gi|161527599|ref|YP_001581425.1| RecA/RadA recombinase-like protein [Nitrosopumilus maritimus SCM1]
 gi|160338900|gb|ABX11987.1| RecA/RadA recombinase-like protein [Nitrosopumilus maritimus SCM1]
          Length = 217

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 74/201 (36%), Gaps = 15/201 (7%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G   LD +L  GG P G IV+I+G   +GKT L L     S K GG   + D     
Sbjct: 2   ISTGLEKLDKSL-FGGIPNGVIVDIFGKNGTGKTQLLLQLAINSIKKGGHVLYFDTTGGF 60

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS-----GAVDIIVIDSVAALTPRAE 162
                  +  + ++            L  T   + S         +IVID++  L     
Sbjct: 61  RPERILDIQKESESQSDFLNQITVSRLTNTSEQINSIKNIERNFSLIVIDNITDLFS--- 117

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
                 +     +  L  + +  L +    ++  +V  N +R   G    +       +A
Sbjct: 118 -YEYQKDESIFEKNSLFMKYMHDLANFAISNRIPIVVTNMIRNLEGKEIENM-----KSA 171

Query: 223 LKFYSSVRLDIRRVGSIKDKD 243
           +  ++ +++ + +  S  D  
Sbjct: 172 IDPFTHIKIHLTKNSSKFDGK 192


>gi|300023239|ref|YP_003755850.1| DNA repair protein RadA [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525060|gb|ADJ23529.1| DNA repair protein RadA [Hyphomicrobium denitrificans ATCC 51888]
          Length = 458

 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 63/168 (37%), Gaps = 3/168 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I R   KG +++L +     E     S+G + LD   G GG   G  + I G    GK+T
Sbjct: 48  ITRQ-SKGRVIKLETLIGSAEEAPRFSTGIMELDRVTG-GGVVPGSAILIGGEPGIGKST 105

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L   A   + GG   +   E A+  +  R   + L +  +    +      I   L  
Sbjct: 106 LLLQVAAHLARRGGRSIYFSGEEAIAQVRLRAGRLGLADAQVGLA-SETNLSNILATLSD 164

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
               D+++IDS+  L            S     A  + +  +   +++
Sbjct: 165 DRPPDLVIIDSIQTLWADTLDAAPGTVSQVRAAALALIRYAKMAGAAL 212


>gi|296413167|ref|XP_002836287.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295630101|emb|CAZ80478.1| unnamed protein product [Tuber melanosporum]
          Length = 367

 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 73/201 (36%), Gaps = 24/201 (11%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS--QKTGGTCAFVDA 103
             +S+GS  LD A+G GG  +G+I E+ GP  SGKTTL L + A +     G    ++D 
Sbjct: 31  SRISTGSQELDKAIG-GGLSRGKITELCGPPGSGKTTLGLQSAANALLSGDGTRVVWIDT 89

Query: 104 EHALDSIYARKLGVD-------LKNLLISQPDTGEQALEITDMLVRSGAV---DIIVIDS 153
            H L       +            NL   +  T    L +    + +       ++VID+
Sbjct: 90  SHPLPVSRLGAILSRSGDPRELFPNLQTIRTPTLAHLLTLVVHPLPTFPPENTSLVVIDN 149

Query: 154 VAALTPRA-----------EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           V+     A                  E +   +  +M   +  L          ++ +NQ
Sbjct: 150 VSTPFTVAFPPGMEEEGGGGGGKVKTEPVGVRRFAIMGDLISALGKLAGSKGVAVLLLNQ 209

Query: 203 MRMKIGVMFGSPETTTGGNAL 223
           M  K+    G+    +  +  
Sbjct: 210 MTTKVIPGVGAMLIPSLSSPP 230


>gi|313185443|gb|ADR50286.1| recombinase A [Borrelia burgdorferi]
          Length = 51

 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/51 (64%), Positives = 41/51 (80%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G+P+ RI+EI+GPESS KTTL L  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   GYPRRRIIEIFGPESSCKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAK 51


>gi|167947015|ref|ZP_02534089.1| recombinase A [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 71

 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGS---QGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
          +++KAL AAL QI++ +GKG++M++G                SGS     A G     +G
Sbjct: 4  NRAKALSAALGQIEKQFGKGSVMRMGDSRLDPQYRRLSPPAPSGSTS-HSAWGGCKRARG 62


>gi|218134187|ref|ZP_03462991.1| hypothetical protein BACPEC_02077 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991562|gb|EEC57568.1| hypothetical protein BACPEC_02077 [Bacteroides pectinophilus ATCC
           43243]
          Length = 457

 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 71/192 (36%), Gaps = 20/192 (10%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E  +   +G   +D  LG GG  +G +V + G    GK+TL L         G    ++ 
Sbjct: 69  EDADRTPTGFEEMDRVLG-GGIVEGSLVLVGGDPGIGKSTLLLQMCRNVSAAGKNVLYIS 127

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E +L  I  R     + +   +     E  LE  +  ++S   DI++IDS+  +  R E
Sbjct: 128 GEESLKQIKLRA--GRIGDFTDNMQLLCETNLEAVESAIKSVKPDIVIIDSIQTMY-REE 184

Query: 163 IEGDMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
           I    G  S       ++ Q        I++S  I +FI     K G          G  
Sbjct: 185 ISSAPGSVSQVRESTSVLMQ--------IAKSMGISIFIVGHVTKEG-------VVAGPR 229

Query: 222 ALKFYSSVRLDI 233
            L+      L  
Sbjct: 230 VLEHMVDTVLYF 241


>gi|319404038|emb|CBI77626.1| DNA repair protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 471

 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 75/221 (33%), Gaps = 16/221 (7%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           +   KG I+ L S     E +  + SG   LD   G GGF +G  + I G    GK+TL 
Sbjct: 48  KNIRKGHIVTLTSLSGDIENVPRIHSGIAELDRVTG-GGFVRGSALLIAGDPGIGKSTLL 106

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
             T A   + G    +V  E A+  I  R   ++  N  +          +I   L    
Sbjct: 107 TQTAAALSQKGYNVIYVSGEEAITQIRLRAQRLNATNTAVQLAA-ETNVEDILATLNTHK 165

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++++DS+  L            +   + A+ M             +   +V +  + 
Sbjct: 166 KLDMVIVDSIQTLWSNLADSAPGTVTQVRISAQAMIHF-------AKNTGVSVVLVGHVT 218

Query: 205 --MKIGVMFGSPETTTG-----GNALKFYSSVRLDIRRVGS 238
              +I           G     G     Y  +R    R G 
Sbjct: 219 KDGQIAGPRVVEHMVDGVFYFEGEGGHHYRILRTMKNRFGP 259


>gi|150400229|ref|YP_001323996.1| DNA repair and recombination protein RadB [Methanococcus vannielii
           SB]
 gi|150012932|gb|ABR55384.1| DNA repair and recombination protein RadB [Methanococcus vannielii
           SB]
          Length = 213

 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 92/209 (44%), Gaps = 19/209 (9%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL-----DSIYARKLG 116
           G   K  I +IYGP   GKT + + ++ ++ + G    ++D E  L       I+     
Sbjct: 8   GNIEKKTITQIYGPPGVGKTNICIISMIKTIEQGKKVVYIDTEGGLSIERVKQIFKEDFN 67

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
             LKN+L+ +P T E+  ++ + ++    + +I+ID + +L  R E+  D+ E+      
Sbjct: 68  TLLKNILLYEPSTFEEQTKVLEKILLLENIGLIIIDGIVSLY-RLELCDDIVENT--KLN 124

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI--- 233
           R++ + +  L     +    ++  NQ++  +           GG  L+++S   +     
Sbjct: 125 RILGKQISTLLKISRKKDSGILITNQVKDSLS-----GFEPAGGRLLEYWSKSIIRAEKK 179

Query: 234 ---RRVGSIKDKDSITGNQTRVKVVKNKM 259
              R++   K +    G   +  +++N +
Sbjct: 180 DTYRKLTLEKHRCFKEGEILKFIIIENGI 208


>gi|209946274|gb|ACI97368.1| spindle A [Drosophila simulans]
 gi|209946276|gb|ACI97369.1| spindle A [Drosophila simulans]
          Length = 211

 Score = 61.0 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 15/114 (13%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----- 94
            +   +  +S+GS  LD  LG GG   G I EI+G    GKT L        Q       
Sbjct: 91  QMRADVVQLSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKG 149

Query: 95  -GGTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQALEITDM 139
             G C ++D E+         +           L N+  ++    +Q  ++  M
Sbjct: 150 GEGKCMYIDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKLIQM 203


>gi|209946280|gb|ACI97371.1| spindle A [Drosophila melanogaster]
 gi|209946282|gb|ACI97372.1| spindle A [Drosophila melanogaster]
 gi|209946284|gb|ACI97373.1| spindle A [Drosophila melanogaster]
 gi|209946286|gb|ACI97374.1| spindle A [Drosophila melanogaster]
 gi|209946288|gb|ACI97375.1| spindle A [Drosophila melanogaster]
 gi|209946290|gb|ACI97376.1| spindle A [Drosophila melanogaster]
 gi|209946292|gb|ACI97377.1| spindle A [Drosophila melanogaster]
 gi|209946294|gb|ACI97378.1| spindle A [Drosophila melanogaster]
 gi|209946296|gb|ACI97379.1| spindle A [Drosophila melanogaster]
 gi|209946298|gb|ACI97380.1| spindle A [Drosophila melanogaster]
 gi|209946300|gb|ACI97381.1| spindle A [Drosophila melanogaster]
 gi|209946302|gb|ACI97382.1| spindle A [Drosophila melanogaster]
 gi|209946304|gb|ACI97383.1| spindle A [Drosophila melanogaster]
 gi|209946306|gb|ACI97384.1| spindle A [Drosophila melanogaster]
 gi|209946308|gb|ACI97385.1| spindle A [Drosophila melanogaster]
 gi|209946310|gb|ACI97386.1| spindle A [Drosophila melanogaster]
 gi|209946312|gb|ACI97387.1| spindle A [Drosophila melanogaster]
 gi|209946314|gb|ACI97388.1| spindle A [Drosophila melanogaster]
 gi|209946316|gb|ACI97389.1| spindle A [Drosophila melanogaster]
 gi|209946320|gb|ACI97391.1| spindle A [Drosophila melanogaster]
 gi|209946322|gb|ACI97392.1| spindle A [Drosophila melanogaster]
 gi|209946324|gb|ACI97393.1| spindle A [Drosophila melanogaster]
 gi|209946326|gb|ACI97394.1| spindle A [Drosophila melanogaster]
 gi|209946328|gb|ACI97395.1| spindle A [Drosophila melanogaster]
 gi|209946330|gb|ACI97396.1| spindle A [Drosophila melanogaster]
 gi|209946332|gb|ACI97397.1| spindle A [Drosophila melanogaster]
 gi|209946334|gb|ACI97398.1| spindle A [Drosophila melanogaster]
 gi|209946336|gb|ACI97399.1| spindle A [Drosophila melanogaster]
          Length = 211

 Score = 60.6 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 15/114 (13%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----- 94
            +   +  +S+GS  LD  LG GG   G I EI+G    GKT L        Q       
Sbjct: 91  QMRADVVQLSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKG 149

Query: 95  -GGTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQALEITDM 139
             G C ++D E+         +           L N+  ++    +Q  ++  M
Sbjct: 150 GEGKCMYIDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKLIQM 203


>gi|209946268|gb|ACI97365.1| spindle A [Drosophila simulans]
          Length = 211

 Score = 60.6 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 15/114 (13%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----- 94
            +   +  +S+GS  LD  LG GG   G I EI+G    GKT L        Q       
Sbjct: 91  QMRADVVQLSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKG 149

Query: 95  -GGTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQALEITDM 139
             G C ++D E+         +           L N+  ++    +Q  ++  M
Sbjct: 150 GEGKCMYIDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKLIQM 203


>gi|327401023|ref|YP_004341862.1| putative circadian clock protein KaiC [Archaeoglobus veneficus
           SNP6]
 gi|327316531|gb|AEA47147.1| putative circadian clock protein, KaiC [Archaeoglobus veneficus
           SNP6]
          Length = 228

 Score = 60.6 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 3/94 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++V+ +G  GLD  LG GG PKG IV + G   +GKTTL LH I +  K   TC  +  +
Sbjct: 1   MDVLPTGIEGLDRLLG-GGIPKGHIVAVIGSYGTGKTTLGLHFIYEGLKNDETCIIISFD 59

Query: 105 HALDSIYARK--LGVDLKNLLISQPDTGEQALEI 136
               SI       G+D++    +   T  +A EI
Sbjct: 60  EDEKSILENASSFGMDMERYSDNLEITRLEAAEI 93


>gi|148672697|gb|EDL04644.1| disrupted meiotic cDNA 1 homolog, isoform CRA_b [Mus musculus]
          Length = 294

 Score = 60.6 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 70/223 (31%), Gaps = 50/223 (22%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +++GS   D  LG GG     I E +G   +GKT L+     + Q               
Sbjct: 110 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCGEHQME------------- 155

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
                         LL        +   I           +++IDS+ AL          
Sbjct: 156 --------------LLDYVAAKFHEEAGI---------FKLLIIDSIMALFR----VDFS 188

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG---SPETTTGGNALK 224
           G      + + ++Q L +L          +   NQM    G        P+   GG+ L 
Sbjct: 189 GRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILA 248

Query: 225 FYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
             S+ R+ +R      R+  I D   +  N+    +    +  
Sbjct: 249 HASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIGD 291


>gi|323333826|gb|EGA75217.1| Dmc1p [Saccharomyces cerevisiae AWRI796]
          Length = 212

 Score = 60.6 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 79/215 (36%), Gaps = 31/215 (14%)

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKLGVDLK 120
             I E++G    GKT ++      +Q         G  A++D E        +++    +
Sbjct: 1   MSITEVFGEFRCGKTQMSHTLCVTTQLPREMGGGEGKVAYIDTEGTFRPERIKQIAEGYE 60

Query: 121 --------NLLISQPDTGEQALEITDM---LVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
                   N+  ++    E  +E+ +     + SG   +IV+DS+ A   R +  G    
Sbjct: 61  LDPESCLANVSYARALNSEHQMELVEQLGEELSSGDYRLIVVDSIMA-NFRVDYCGRGEL 119

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM----FGSPETTTGGNALKF 225
           S    + + ++Q L KL          +   NQ++   G              GG+ L  
Sbjct: 120 S---ERQQKLNQHLFKLNRLAEEFNVAVFLTNQVQSDPGASALFASADGRKPIGGHVLAH 176

Query: 226 YSSVRLDIR------RVGSIKDKDSITGNQTRVKV 254
            S+ R+ +R      RV  ++D   +   +  ++ 
Sbjct: 177 ASATRILLRKGRGDERVAKLQDSPDMPEKRMCLRN 211


>gi|209946270|gb|ACI97366.1| spindle A [Drosophila simulans]
 gi|209946272|gb|ACI97367.1| spindle A [Drosophila simulans]
 gi|209946278|gb|ACI97370.1| spindle A [Drosophila simulans]
          Length = 211

 Score = 60.6 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 15/114 (13%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----- 94
            +   +  +S+GS  LD  LG GG   G I EI+G    GKT L        Q       
Sbjct: 91  QMRADVVQLSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKG 149

Query: 95  -GGTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQALEITDM 139
             G C ++D E+         +           L N+  ++    +Q  ++  M
Sbjct: 150 GEGKCMYIDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKLIQM 203


>gi|291523678|emb|CBK81971.1| Predicted ATP-dependent serine protease [Coprococcus catus GD/7]
          Length = 461

 Score = 60.6 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 73/222 (32%), Gaps = 30/222 (13%)

Query: 24  QRVYGKGAIMQLG--SQGSIFEGI----------EVVSSGSLGLDIALGIGGFPKGRIVE 71
           +   GKG++   G   Q    E +          +  S+G    D  LG GG   G +V 
Sbjct: 36  EPTIGKGSMASGGIRHQAKASEPVLLSSVHSSDEKRRSTGISEFDRVLG-GGIVPGSLVL 94

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           + G    GK+TL L       +      +V  E +L  I  R     L           E
Sbjct: 95  VGGDPGIGKSTLLLQMSRCLSEQSCRTVYVSGEESLQQIRLRA--DRLGVFKNDLAMLCE 152

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
             L++    +     ++++IDS+  +   A   G    S       ++ Q        ++
Sbjct: 153 TNLDVIQETILKYKPEVVIIDSIQTMYREAISSGAGSVSQVREATSVLMQ--------LA 204

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
           + + I +FI     K G          G   L+      L  
Sbjct: 205 KRENIAIFIVGHVTKEG-------VVAGPRVLEHMVDTVLYF 239


>gi|319407050|emb|CBI80687.1| DNA repair protein [Bartonella sp. 1-1C]
          Length = 462

 Score = 60.6 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 75/221 (33%), Gaps = 16/221 (7%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           +   KG I+ L S     E +  + SG   LD   G GGF +G  + I G    GK+TL 
Sbjct: 48  KNIRKGHIVTLTSLSGNIENVPRIHSGIAELDRVTG-GGFVRGSALLIAGDPGIGKSTLL 106

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
             T A   + G    +V  E A+  I  R   ++  +  +          +I   L    
Sbjct: 107 TQTAAALSQKGYNVIYVSGEEAITQIRLRAQRLNATDTAVQLAA-ETNVEDILATLNAHE 165

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D++++DS+  L            +   + A+ M             +   +V +  + 
Sbjct: 166 KLDMVIVDSIQTLWSNLADSAPGTVTQVRISAQAMIHF-------AKNTGVSVVLVGHVT 218

Query: 205 --MKIGVMFGSPETTTG-----GNALKFYSSVRLDIRRVGS 238
              +I           G     G     Y  +R    R G 
Sbjct: 219 KDGQIAGPRVVEHMVDGVFYFEGEGGHHYRILRTIKNRFGP 259


>gi|209946266|gb|ACI97364.1| spindle A [Drosophila yakuba]
          Length = 211

 Score = 60.6 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 15/114 (13%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----- 94
            +   +  +S+GS  LD  LG GG   G I EI+G    GKT L        Q       
Sbjct: 91  QMRADVVQLSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKG 149

Query: 95  -GGTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQALEITDM 139
             G C ++D E+         +           L N+  ++    +Q  ++  M
Sbjct: 150 GEGKCMYIDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKLIQM 203


>gi|313185431|gb|ADR50280.1| recombinase A [Borrelia burgdorferi]
          Length = 51

 Score = 60.6 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/51 (64%), Positives = 41/51 (80%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
           G+P+GRI+EI+G ESSGK TL L  IA+ QK GG  AF+DAEHALD +YA+
Sbjct: 1   GYPRGRIIEIFGSESSGKNTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAK 51


>gi|119483016|ref|XP_001261536.1| hypothetical protein NFIA_027130 [Neosartorya fischeri NRRL 181]
 gi|119409691|gb|EAW19639.1| hypothetical protein NFIA_027130 [Neosartorya fischeri NRRL 181]
          Length = 385

 Score = 60.6 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 83/237 (35%), Gaps = 48/237 (20%)

Query: 47  VVSSGSLGLDIALG---------------IGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           V+S+G   LD A+                +GG P G + E++GP   GKT LA+   A +
Sbjct: 37  VISTGLPRLDQAISPASSDETSQSSSDATLGGIPCGHVTEVFGPPGVGKTALAMSITANA 96

Query: 92  QKTGGTCAFVDAEHALDSIYAR----------KLGVDLKNLLISQPDTGEQA-------L 134
              G    ++D    L  +  +          KL    + L+ +      Q+       L
Sbjct: 97  LCDGSKVVWIDTTSPLPKLRLKSMLMQNLDTAKLSDTPEQLMDNLIYFRAQSLPHLLALL 156

Query: 135 EITDMLVRSGAVDIIVIDSVAALTP--------------RAEIEGDMG-ESLPGMQARLM 179
                        ++V+DSV+   P              +A+I        L   +  + 
Sbjct: 157 LHPPQGFPPKNTKLLVVDSVSGPFPSYFLSPSELKSRLAQAKITDKSQIHWLMNRRWNVT 216

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT-TGGNALKFYSSVRLDIRR 235
           S+   +L    +  +  ++ INQ   KI  +  +  +    G A +     R+ + R
Sbjct: 217 SELANQLMKLAASGRMAVLLINQTHTKIKGLPRATLSPLLAGGAWENSVYTRIVLYR 273


>gi|331001631|ref|ZP_08325154.1| DNA repair protein RadA [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330413352|gb|EGG92719.1| DNA repair protein RadA [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 454

 Score = 60.6 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 79/228 (34%), Gaps = 12/228 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E  +   +G   LD  LG GG  +G +V + G    GK+TL L           T  ++
Sbjct: 65  LEEEDRFKTGFEELDRVLG-GGVVRGSLVLVGGDPGIGKSTLLLQVCKNISDDKKTVLYI 123

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
             E +L  I  R     +  +  +     E  L +    V S   D++VIDS+  +    
Sbjct: 124 SGEESLKQIKMRA--KRVGEITGNLSFLCETNLNMIKETVLSEKPDVVVIDSIQTMFNEE 181

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
                   S       L+ Q        + +   I +FI     K G + G        +
Sbjct: 182 VASAPGSVSQVRESTNLLMQ--------VGKENNIAIFIVGHVTKEGQVAGPRVLEHMVD 233

Query: 222 ALKFYSSVRLDIRRV-GSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
            + ++   R    R+  ++K++   T      ++    +       EF
Sbjct: 234 TVLYFEGDRFATYRILRAVKNRFGSTNEIGVFEMQDAGLIEVKNPSEF 281


>gi|91772777|ref|YP_565469.1| KaiC [Methanococcoides burtonii DSM 6242]
 gi|91711792|gb|ABE51719.1| KaiC domain-containing protein [Methanococcoides burtonii DSM 6242]
          Length = 301

 Score = 60.6 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 46/169 (27%), Positives = 67/169 (39%), Gaps = 13/169 (7%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E  +  K+  LE AL  +     K  I       +I + I+ VS+G  GLD  L  GG P
Sbjct: 24  EKELGAKNLVLEKALLSLDSTKFKSKI----DINNIDKVIKRVSTGVAGLDDML-EGGVP 78

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS--IYARKLGVDL---- 119
           KG  V + GP  +GKTTL +  + +  K    C F   E  +     +  + G DL    
Sbjct: 79  KGSSVIVTGPPGTGKTTLCMQFLMEGVKADEKCLFFSFEERIPQLIQHFMRFGWDLGSHI 138

Query: 120 -KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
               L     +     EI   ++ +     IV DS+   T   E    +
Sbjct: 139 DDGYLEIFGMSMLTFEEI-GEIIETYKPQRIVFDSLNVFTDPEEFRKSI 186


>gi|15791243|ref|NP_281067.1| DNA repair and recombination protein RadA [Halobacterium sp. NRC-1]
 gi|10581871|gb|AAG20547.1| DNA repair protein [Halobacterium sp. NRC-1]
          Length = 386

 Score = 60.2 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 55/274 (20%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG---- 95
              E I  ++     +D  LG GG     I E+YG   +GK+ +        Q       
Sbjct: 117 ERREQIGKLTWNIPEVDDLLG-GGVETQSITEVYGEFGAGKSQVTHQLAVNVQLPTEYGG 175

Query: 96  --GTCAFVDAEHALDSIYARKLGVD--------------------------------LKN 121
             G   F+D+E          +                                   L  
Sbjct: 176 LHGRAVFIDSEDTFRPERIDDMVRGLSDETLQAAMEAHEIEGSTDDEDTLTELVDAFLDK 235

Query: 122 LLISQPDTGEQAL-------EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           + +++       +       EI            ++         RAE  G         
Sbjct: 236 IHVAKGFNSNHQMLLAEKAKEIASEHEDGDWPVRMLTVDSLTAHFRAEYVGR---GELAD 292

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
           + + +++ L  L    +     ++  NQ++      FG P    GGN L   S+ R+ +R
Sbjct: 293 RQQKLNKHLHDLEKVGNLYNAAVLVTNQVQSNPDAFFGDPTKPIGGNILGHKSTFRMYLR 352

Query: 235 RVGSIK------DKDSITGNQTRVKVVKNKMASP 262
           +  + K      D  ++   +  ++V    +   
Sbjct: 353 KSKNDKRIVKLVDAPNLADGEAVMRVQDEGLKPE 386


>gi|20091277|ref|NP_617352.1| hypothetical protein MA2446 [Methanosarcina acetivorans C2A]
 gi|19916400|gb|AAM05832.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 241

 Score = 60.2 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 67/168 (39%), Gaps = 13/168 (7%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+G  GLD  L  GG+PKG+ + + GP  SGKT L LH + +S + G  C  V   
Sbjct: 1   MESLSTGVEGLD-LLTDGGYPKGKSILVTGPPGSGKTILGLHFLHRSCQEGEKCILVLTR 59

Query: 105 HALDSIYARK--LGVDLKNL----------LISQPDTGEQALEITDMLVRSGAVDIIVID 152
                I  +     ++L+            +        +++      + +   DII   
Sbjct: 60  ELTADILTQARSFKLNLEPFLENGQLHIRNIFEDKMNKIKSVSKFGKGLCAVDTDIIEYL 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           S  +      +  ++G        +  +     ++  + ++ C  +F+
Sbjct: 120 SSMSSEADVVVIDNIGVMAINHDIKEFADEFSSISIILLKNGCTSLFV 167


>gi|302830708|ref|XP_002946920.1| hypothetical protein VOLCADRAFT_103167 [Volvox carteri f.
           nagariensis]
 gi|300267964|gb|EFJ52146.1| hypothetical protein VOLCADRAFT_103167 [Volvox carteri f.
           nagariensis]
          Length = 414

 Score = 60.2 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99
            +   I+V+ +G   +D  LG GG  +G +VE+ G   SGKT L L   A +   G    
Sbjct: 87  ELRHSIQVLPTGCAAIDTLLG-GGLREGTLVEVAGETGSGKTQLCLSAAATTAYRGEAVL 145

Query: 100 FVDAEHALDSIYARKL 115
           +VD   +       ++
Sbjct: 146 YVDCTGSFAPERIVQM 161


>gi|313906503|ref|ZP_07839836.1| DNA repair protein RadA [Eubacterium cellulosolvens 6]
 gi|313468669|gb|EFR64038.1| DNA repair protein RadA [Eubacterium cellulosolvens 6]
          Length = 461

 Score = 60.2 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 69/192 (35%), Gaps = 3/192 (1%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   LD  LG GG  KG ++ I G    GK+TL L    +    G    +V  E +L  
Sbjct: 76  TGIGELDRVLG-GGIVKGALMLIGGDPGIGKSTLLLQVCRELSDKGVHVLYVSGEESLQQ 134

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           I  R L   +     +     E  L+    ++ +   +++VIDS+  +   A        
Sbjct: 135 IKLRAL--RIGTFTDNLKLYCETDLDDIQRVIENDKPELVVIDSIQTMYNEAVSSSPGSV 192

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           S       ++ +  + L   +     +    N    ++            G+  + Y  +
Sbjct: 193 SQVRETTAVLLRMAKTLQVPVFIVGHVTKDGNVAGPRVLEHMVDTVLYFEGDRNQSYRIL 252

Query: 230 RLDIRRVGSIKD 241
           R    R GS  +
Sbjct: 253 RAAKNRFGSTNE 264


>gi|319405475|emb|CBI79094.1| DNA repair protein [Bartonella sp. AR 15-3]
          Length = 477

 Score = 60.2 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/161 (24%), Positives = 62/161 (38%), Gaps = 2/161 (1%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           +   KG I+ L S     E I  + SG   LD   G GGF +G  + I G    GK+TL 
Sbjct: 48  KNICKGHIVTLTSLSGDIENIPRIHSGIAELDRVTG-GGFVRGSALLIAGDPGIGKSTLL 106

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
             T A   +      +V  E A+  I  R   ++  N  +          +I   L    
Sbjct: 107 TQTAAALSQKKYNVIYVSGEEAITQIRLRAQRLNATNTAVQLAA-ETNVEDILATLNTHK 165

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
            +D++++DS+  L            +   + A+ M    +K
Sbjct: 166 KLDMVIVDSIQTLWSNLADSAPGTVTQVRISAQAMIHFAKK 206


>gi|197122655|ref|YP_002134606.1| hypothetical protein AnaeK_2250 [Anaeromyxobacter sp. K]
 gi|196172504|gb|ACG73477.1| conserved hypothetical protein [Anaeromyxobacter sp. K]
          Length = 228

 Score = 60.2 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/81 (39%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            V SG   +D AL  GGFP+G + E+ G  +SGKT +AL  +A         A+VD    
Sbjct: 31  CVPSGLPEVDAALPGGGFPRGALCELAGGPASGKTAVALSLVAGLGPED-LSAWVDVRGD 89

Query: 107 LDSIYARKLGVDLKNLLISQP 127
           L    A   GVDL  LL+ +P
Sbjct: 90  LYPPAAAARGVDLARLLVVRP 110


>gi|76801091|ref|YP_326099.1| DNA repair and recombination protein RadA [Natronomonas pharaonis
           DSM 2160]
 gi|76556956|emb|CAI48530.1| DNA repair and recombination protein [Natronomonas pharaonis DSM
           2160]
          Length = 345

 Score = 60.2 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 84/263 (31%), Gaps = 57/263 (21%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG------GTCAFVDAEH 105
              +D  LG GG     I E+YG   +GK+ +        Q         G C FVD+E 
Sbjct: 88  IPEIDEMLG-GGVETQSITEVYGEFGAGKSQVTHQLAVNVQLPEEAGGLHGRCVFVDSED 146

Query: 106 ALDSIYARKLGVDL--------------------------------KNLLISQPDTGEQA 133
                   ++   L                                  + +++       
Sbjct: 147 TFRPERIDEMVRGLPEDVIEAALEEREIDGNPDDEETMEELVQSFLDKIHVAKAFNSNHQ 206

Query: 134 LEITDMLVR--------SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           + + +               V ++ +DS+ A   RAE  G         + + +++ L  
Sbjct: 207 ILLAEKAQEIAAEHEEGDYPVRLLCVDSLTAHF-RAEYVGRGE---LADRQQKLNKHLHD 262

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI------RRVGSI 239
           +    +      V  NQ++      FG P    GGN L   S+ R+ +      +R+  +
Sbjct: 263 IDRVGNLYNAATVVTNQVQSNPDAFFGDPTKPIGGNILGHKSTFRMYLKKSKGDKRIVKL 322

Query: 240 KDKDSITGNQTRVKVVKNKMASP 262
            D  ++   +  ++V  + +   
Sbjct: 323 VDAPNLPDGEAVMRVENDGLKPE 345


>gi|209946318|gb|ACI97390.1| spindle A [Drosophila melanogaster]
          Length = 211

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 15/114 (13%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----- 94
            +   +  +S+GS  LD  LG GG   G I EI+G    GKT L        Q       
Sbjct: 91  QMRADVVQLSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKG 149

Query: 95  -GGTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQALEITDM 139
             G C ++D E+         +           L N+  ++    +Q  ++  M
Sbjct: 150 GEGKCMYIDTENTFRPERLXXIAQRYKLNESEVLDNVAFTRAHNSDQQTKLIQM 203


>gi|4322492|gb|AAD16062.1| recombination/repair protein RadA [Halobacterium salinarum]
          Length = 353

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 79/274 (28%), Gaps = 55/274 (20%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG---- 95
              E I  ++     +D  LG GG     I E+YG   +GK+ +        Q       
Sbjct: 84  EPREQIGKLTWNIPEVDDLLG-GGVETQSITEVYGEFGAGKSQVTHQLAVNVQLPTEYGA 142

Query: 96  --GTCAFVDAEHALDSIYARKLGVD--------------------------------LKN 121
             G   F+D+E          +                                   L  
Sbjct: 143 LHGRAVFIDSEDTFRPERIDDMVRGLSDETLQAAMEAHEIEGSTDDEDTLTELVDAFLDK 202

Query: 122 LLISQPDTGEQAL-------EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           + +++       +       EI            ++         RAE  G         
Sbjct: 203 IHVAKGFNSNHQMLLAEKAKEIASEHEDGDWPVRMLTVDSLTAHFRAEYVGRGE---LAD 259

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
           + + +++ L  L          ++  NQ++      FG P    GGN L   S+ R+ +R
Sbjct: 260 RQQKLNKHLHDLEPVGDLYNAAVLVTNQVQSNPDAFFGDPTKPIGGNILGHKSTFRMYLR 319

Query: 235 RVGSIK------DKDSITGNQTRVKVVKNKMASP 262
           +  + K      D  ++   +  ++V    +   
Sbjct: 320 KSKNDKRIVKLVDAPNLADGEAVMRVQDEGLKPE 353


>gi|56551485|ref|YP_162324.1| DNA repair protein RadA [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241761131|ref|ZP_04759220.1| DNA repair protein RadA [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|260752906|ref|YP_003225799.1| DNA repair protein RadA [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|56543059|gb|AAV89213.1| DNA repair protein RadA [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241374750|gb|EER64211.1| DNA repair protein RadA [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|258552269|gb|ACV75215.1| DNA repair protein RadA [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 455

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 59/157 (37%), Gaps = 2/157 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G I++LG+  +     E + +G    D  LG GGF  G    I G    GK+TL L    
Sbjct: 54  GNIVRLGNLATEQPLPERMVTGIAEFDRVLG-GGFVSGSATLIGGDPGIGKSTLLLQAGV 112

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           +    G    ++  E A+D I  R   +      +          +I   L +   +D +
Sbjct: 113 RLALAGKEVVYISGEEAVDQIRLRAKRLGFGQAPVQLAAASS-VRDILATLEQLPHIDFL 171

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           +IDS+  +            S     ++ + +  ++ 
Sbjct: 172 IIDSIQTMYSDMIEGAPGTVSQVRASSQELIRFAKEA 208


>gi|296191898|ref|XP_002743823.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog isoform
           2 [Callithrix jacchus]
          Length = 284

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 70/223 (31%), Gaps = 50/223 (22%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +++GS   D  LG GG     I E +G   +GKT L+     + Q               
Sbjct: 100 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCGEHQME------------- 145

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
                         LL        +   I           +++IDS+ AL          
Sbjct: 146 --------------LLDYVAAKFHEEPGI---------FKLLIIDSIMALFR----VDFS 178

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF---GSPETTTGGNALK 224
           G      + + ++Q L +L          +   NQM    G        P+   GG+ L 
Sbjct: 179 GRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQPDPKKPIGGHILA 238

Query: 225 FYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
             S+ R+ +R      R+  I D   +  N+    +    +  
Sbjct: 239 HASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIGD 281


>gi|307153406|ref|YP_003888790.1| putative circadian clock protein KaiC [Cyanothece sp. PCC 7822]
 gi|306983634|gb|ADN15515.1| putative circadian clock protein, KaiC [Cyanothece sp. PCC 7822]
          Length = 570

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 61/339 (17%), Positives = 106/339 (31%), Gaps = 51/339 (15%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           I  LG +  +    E VSSG   LD  LG  G+ +   + I G   +GK+TLA H  A +
Sbjct: 245 ITSLGLEHKVSN--ERVSSGIPRLDKMLGGQGYYRNSSILITGTAGTGKSTLAAHFAAAT 302

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
            + G  C ++  E A   I      V L            +   +           + + 
Sbjct: 303 CRRGERCLYMALEEAPQQILRNMRSVGLDLNPFI-AQELLKFYAVRPTTYGLEMHLVKIH 361

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           + +    P   I   M                 +L       K  ++  N          
Sbjct: 362 NWIKTFAPSTVIIDPMSNLSLTGNLIQTKAFFMRLIDYFKSEKITVLLTN---------- 411

Query: 212 GSPETTTGGNALKFYSS-------VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
                T GG+ L+             L+IR + +     +   N+    +    M    +
Sbjct: 412 ----LTPGGSPLEHTEIGVSSLMDTWLEIRTLET-----NGERNRILYVLKSRGMDHSNQ 462

Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324
             E  +   EG+      + LG   +                  G        +EN+E  
Sbjct: 463 VREL-LFKSEGVELLDVYLGLGTVLT------------------GTARVAQETQENLERV 503

Query: 325 ---ENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
              + IE   R+     A +  Q  A+  + +A++++ D
Sbjct: 504 KQQQEIERKKREYKRRAAVAKAQIEALQAQLEAEQEELD 542



 Score = 41.0 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 4/114 (3%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KT 94
           +    + +    +G  GLD   G GG P+GR   + G    GKT + +  + +       
Sbjct: 9   ETKQKKQLRKCPTGISGLDEITG-GGLPQGRPTLVCGSAGCGKTLMGVEFLVRGATEYDE 67

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
            G     +      +     LG DL  L+  +    +        +  +G  D+
Sbjct: 68  PGILMSFEETAQELTENVISLGWDLAELIAQKKLIIDHVSIDPQEIAETGDYDL 121


>gi|207345770|gb|EDZ72480.1| YER179Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|323348865|gb|EGA83103.1| Dmc1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 223

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 80/223 (35%), Gaps = 31/223 (13%)

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKLGVDL 119
              I E++G    GKT ++      +Q         G  A++D E        +++    
Sbjct: 2   TMSITEVFGEFRCGKTQMSHTLCVTTQLPREMGGGEGKVAYIDTEGTFRPERIKQIAEGY 61

Query: 120 K--------NLLISQPDTGEQALEITDM---LVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
           +        N+  ++    E  +E+ +     + SG   +IV+DS+ A   R +  G   
Sbjct: 62  ELDPESCLANVSYARALNSEHQMELVEQLGEELSSGDYRLIVVDSIMA-NFRVDYCGRGE 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM----FGSPETTTGGNALK 224
            S    + + ++Q L KL          +   NQ++   G              GG+ L 
Sbjct: 121 LS---ERQQKLNQHLFKLNRLAEEFNVAVFLTNQVQSDPGASALFASADGRKPIGGHVLA 177

Query: 225 FYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
             S+ R+ +R      RV  ++D   +   +    + +  +  
Sbjct: 178 HASATRILLRKGRGDERVAKLQDSPDMPEKECVYVIGEKGITD 220


>gi|194387328|dbj|BAG60028.1| unnamed protein product [Homo sapiens]
          Length = 285

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 70/223 (31%), Gaps = 50/223 (22%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +++GS   D  LG GG     I E +G   +GKT L+     + Q               
Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCGEHQME------------- 146

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
                         LL        +   I           +++IDS+ AL          
Sbjct: 147 --------------LLDYVAAKFHEEAGI---------FKLLIIDSIMALFR----VDFS 179

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG---SPETTTGGNALK 224
           G      + + ++Q L +L          +   NQM    G        P+   GG+ L 
Sbjct: 180 GRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILA 239

Query: 225 FYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
             S+ R+ +R      R+  I D   +  N+    +    +  
Sbjct: 240 HASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIGD 282


>gi|76157801|gb|AAX28612.2| SJCHGC08668 protein [Schistosoma japonicum]
          Length = 226

 Score = 59.9 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 62/178 (34%), Gaps = 24/178 (13%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           K ++     K +EAA   +   +                 I  +++GS  LD  L  GG 
Sbjct: 56  KGISEAKADKIIEAAQKLVPFGFTTAT-----EFHQKRSEIIQLTTGSKELDKLL-QGGI 109

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKL--- 115
             G I E++G   +GKT +        Q         G C ++D E          +   
Sbjct: 110 ETGSITELFGEFRTGKTQICHTLAVTCQLPIDMGGGEGKCLYIDTEGTFRPERLLAVAER 169

Query: 116 -----GVDLKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
                   L N+  ++    +  +E+      ++      ++V+DS  AL  R +  G
Sbjct: 170 YGLSGSDVLDNVAYARAYNTDHQMELLINAAAMMSESRYALLVVDSARALY-RTDYSG 226


>gi|26345652|dbj|BAC36477.1| unnamed protein product [Mus musculus]
          Length = 285

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 70/223 (31%), Gaps = 50/223 (22%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +++GS   D  LG GG     I E +G   +GKT L+     + Q               
Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCGEHQME------------- 146

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
                         LL        +   I           +++IDS+ AL          
Sbjct: 147 --------------LLDYVAAKFHEEAGI---------FKLLIIDSIMALFR----VDFS 179

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG---SPETTTGGNALK 224
           G      + + ++Q L +L          +   NQM    G        P+   GG+ L 
Sbjct: 180 GRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILA 239

Query: 225 FYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
             S+ R+ +R      R+  I D   +  N+    +    +  
Sbjct: 240 HASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIGD 282


>gi|225435094|ref|XP_002281461.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 333

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 89/263 (33%), Gaps = 35/263 (13%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L       +  +V+S+G  G+D+ L  GG   G + E+ GP S+GKT + L   +   
Sbjct: 76  MELLEDAQ--QNKQVLSTGCEGIDMLL-HGGLCVGHLTELVGPSSAGKTQICLKVASGVA 132

Query: 93  KTG-GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
               G   F+D  ++   +        + + +  +         ++ +L  S      ++
Sbjct: 133 TRYMGGVVFIDTGNSFSPLRIAHFINQIPDTIFKEVKQNILEKVMSQILCHSVFDIFAML 192

Query: 152 DSVAALTPRAEIEGDMGESLPGM--------------------QARLMSQALRKLTSSIS 191
           D V  L      +   G     +                       LM  A   L     
Sbjct: 193 DVVHQLEYSLRSQVQTGADQVRLLIVDSISSLITPILGGSGSHGRALMISAGFLLKKLAH 252

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
                +V  N M    G           G + K    VRL + R     D  S   + + 
Sbjct: 253 EHNLAVVVTNHMVGGEG----GILKPALGESWKSIPHVRLLLSR-----DPGSSICHMSI 303

Query: 252 VK--VVKNKMASPFKQVEFDIMY 272
           +K   ++N   + +++ ++D  +
Sbjct: 304 LKHSYMENLSFACYQRPDYDNDF 326


>gi|166030653|ref|ZP_02233482.1| hypothetical protein DORFOR_00319 [Dorea formicigenerans ATCC
           27755]
 gi|166029655|gb|EDR48412.1| hypothetical protein DORFOR_00319 [Dorea formicigenerans ATCC
           27755]
          Length = 456

 Score = 59.5 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 65/196 (33%), Gaps = 3/196 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + +G L LD  LG GG   G +V + G    GK+TL L    +         ++  E 
Sbjct: 72  ERMQTGILELDRVLG-GGIVPGSLVLVGGDPGIGKSTLLLQVCQKLSGQSRKILYISGEE 130

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +L  I  R     +     S     E  L I   ++     D++VIDS+  +        
Sbjct: 131 SLKQIKLRA--NRMGTFSESLFLLCETNLGIIRHVIEEQHPDMVVIDSIQTMYNEEVASA 188

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
               S       +  Q  + L  SI     +         ++            G+    
Sbjct: 189 PGSVSQVRESTNVFMQLAKGLNISIFIVGHVTKEGTVAGPRVLEHMVDTVLYFEGDRHAS 248

Query: 226 YSSVRLDIRRVGSIKD 241
           Y  +R    R GS  +
Sbjct: 249 YRILRGVKNRFGSTNE 264


>gi|322368119|ref|ZP_08042688.1| DNA repair and recombination protein RadA [Haladaptatus
           paucihalophilus DX253]
 gi|320552135|gb|EFW93780.1| DNA repair and recombination protein RadA [Haladaptatus
           paucihalophilus DX253]
          Length = 343

 Score = 59.5 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 85/275 (30%), Gaps = 57/275 (20%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG---- 95
              E I  +S     +D  LG GG     I E+YG   +GK+ +        Q       
Sbjct: 74  ERRERIGKLSWQIDEVDELLG-GGVETQSITEVYGEFGAGKSQITHQLSVNVQLPPEQGG 132

Query: 96  --GTCAFVDAEHALDSIYARKL--------------------------------GVDLKN 121
             G+  F+D+E          +                                   L  
Sbjct: 133 LHGSVIFIDSEDTFRPERIDDMVRGLPDEAIQATMDDREIDGSPDDEEAMEELVADILDK 192

Query: 122 LLISQPDTGEQALEITDMLVRSG--------AVDIIVIDSVAALTPRAEIEGDMGESLPG 173
           + +++       + + +               V ++ IDS+ A   RAE  G        
Sbjct: 193 IHVAKAFNSNHQMLLAEKAQELAGEHEDSDWPVRLVCIDSLTAHF-RAEYVGR---GQLA 248

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
            + + +++ L  +    +     +V  NQ+       FG P    GGN L   S+ R+ +
Sbjct: 249 TRQQKLNKHLHDIDKVGNLYNTAVVVTNQVSSNPDSFFGDPTQPIGGNILGHKSTFRMYL 308

Query: 234 RRVGSIK------DKDSITGNQTRVKVVKNKMASP 262
           R+    K      D  ++   +  ++V    +   
Sbjct: 309 RKSKGDKRIVRLVDAPNLADGEAVMRVQDGGLKPE 343


>gi|282897096|ref|ZP_06305098.1| hypothetical protein CRD_02017 [Raphidiopsis brookii D9]
 gi|281197748|gb|EFA72642.1| hypothetical protein CRD_02017 [Raphidiopsis brookii D9]
          Length = 72

 Score = 59.5 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 25/42 (59%)

Query: 294 KSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335
           + GAW+S  G+ + QGR+N+  +L E  + AE I+  +R   
Sbjct: 4   RKGAWYSHNGENISQGRDNAIKYLEEKSDFAEKIKEQVRAKL 45


>gi|49475321|ref|YP_033362.1| DNA repair protein RadA [Bartonella henselae str. Houston-1]
 gi|49238127|emb|CAF27334.1| DNA repair protein [Bartonella henselae str. Houston-1]
          Length = 457

 Score = 59.5 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 76/210 (36%), Gaps = 2/210 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG ++ L S     E    + SG   LD   G GGF +G ++ + G    GK+TL   T 
Sbjct: 52  KGRVVALTSLSGNIEDAPRIHSGIAELDRVTG-GGFVRGSVLLVGGDPGIGKSTLLTQTA 110

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A   + G    +V  E A+  I  R   +D  N  +          +I   L     +D+
Sbjct: 111 AALSRKGHHVIYVSGEEAVAQICLRAQRLDAANTKVKLAA-ETNVEDILATLSEHKNLDM 169

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           ++IDS+  L   A        +   + A+ M +  +K  +++     +         ++ 
Sbjct: 170 VIIDSIQTLWSDAADSAPGTVTQVRISAQAMIRFAKKTGAAVVLVGHVTKEGQIAGPRVV 229

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
                      G     Y  +R    R G 
Sbjct: 230 EHMVDAVLYFEGEGGHHYRILRTVKNRFGP 259


>gi|297746183|emb|CBI16239.3| unnamed protein product [Vitis vinifera]
          Length = 371

 Score = 59.5 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 76/216 (35%), Gaps = 32/216 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCAFV 101
           + +   GLD ALG GG P G + E+ GP   GKT   L         A      G   ++
Sbjct: 84  LPTRLKGLDEALG-GGIPFGVLTELVGPPGIGKTQFCLKLSLLASLPASYGGLDGRVIYI 142

Query: 102 DAEHALDSIYARKLGVD---------------LKNLLISQPDT---GEQALEITDMLVRS 143
           DAE    S    ++G                    +L+ +P +     ++L+   + +  
Sbjct: 143 DAESKFSSRRMIEIGSKSFPEIFHVEGMAKEACPLILVLRPTSLSEFTESLQHIKISLLQ 202

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             V ++VIDS+AAL      +G         +   +   +  + S    S+  +V  NQ+
Sbjct: 203 NHVKLLVIDSMAALVTGEYDQGP-------TRQHSLGWHISFVKSVAEFSRIPIVVTNQV 255

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           R +                       R D   V ++
Sbjct: 256 RSQSHDGTSQYSFQVESRGETVDDHTRFDSHLVAAL 291


>gi|156740684|ref|YP_001430813.1| putative circadian clock protein, KaiC [Roseiflexus castenholzii
           DSM 13941]
 gi|156232012|gb|ABU56795.1| putative circadian clock protein, KaiC [Roseiflexus castenholzii
           DSM 13941]
          Length = 535

 Score = 59.5 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 57/159 (35%), Gaps = 2/159 (1%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
             E +SSG   LD  L  GG  +  I  + GP   GKTTL L  + ++   G        
Sbjct: 290 STEHISSGVPELDALL-HGGIERSTITMLCGPSGVGKTTLGLQFMKEAAGRGERSVVYSF 348

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E  +D I  R   V +    +    T  Q L+I  +   +     +V   V     R  +
Sbjct: 349 EEEVDIILGRCEAVAIPARSMIAAGT-LQILKIEPLQYTADEFARLVRRDVQDHGTRLVM 407

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
              +      ++   +   L  L+  +      L+ + +
Sbjct: 408 IDSIAGYNLALRGENLEAQLYALSKYLQHHNVTLLLVVE 446



 Score = 46.0 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 58/166 (34%), Gaps = 10/166 (6%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + +S+G  GLD  L  GGF  GR   + G   SGKTTL +H ++ +            E 
Sbjct: 57  QRLSTGIPGLDEIL-FGGFLPGRAYLVRGGPGSGKTTLGMHFLSAAAAEEAPLFITLTEP 115

Query: 106 ALD-SIYARKLGVDLKNLLISQPDTGEQALEITDML-------VRSGAVDIIVIDSVAAL 157
                  A ++G+D++++         Q     +         V        + + V  L
Sbjct: 116 VAQLQKNAERMGIDVRHIRFLDLSPSPQFFTEVETYDIFSPAEVERAPTARKITEMVERL 175

Query: 158 TPRAEIEGDMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
            P+      M +       A    Q +      +      L+F ++
Sbjct: 176 NPQRVFLDAMTQFRYLASDAYQFRQQVLSFLHFLKERGITLLFTSE 221


>gi|239623569|ref|ZP_04666600.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521600|gb|EEQ61466.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 463

 Score = 59.5 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 70/194 (36%), Gaps = 24/194 (12%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E  + +S+G   LD  LG  G   G +V + G    GK+TL L         G    ++ 
Sbjct: 76  EEQDRISTGFGELDRVLGD-GIVSGSLVLVGGDPGIGKSTLLLQVCRHLAGAGRKVLYIS 134

Query: 103 AEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
            E +L  I  R  ++G     L      +    L+  +  + +    I VIDS+  +  R
Sbjct: 135 GEESLKQIKMRANRIGPVTGELRFLCETS----LDRIEHAIETEMPQIAVIDSIQTMY-R 189

Query: 161 AEIEGDMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
            EI    G  S       ++ Q        I++S+ I +F+     K G          G
Sbjct: 190 EEISSAPGSVSQVRESTAILMQ--------IAKSRGIAIFVVGHVTKEG-------VVAG 234

Query: 220 GNALKFYSSVRLDI 233
              L+      L  
Sbjct: 235 PRVLEHMVDTVLYF 248


>gi|62002243|gb|AAX58723.1| RecA [Lactobacillus plantarum]
          Length = 68

 Score = 59.5 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 44/67 (65%), Positives = 56/67 (83%)

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI D LV SGAVDI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALRKL+ ++++ 
Sbjct: 2   LEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSRTLNKP 61

Query: 194 KCILVFI 200
             I +FI
Sbjct: 62  MTIALFI 68


>gi|255322758|ref|ZP_05363902.1| DNA repair protein RadA [Campylobacter showae RM3277]
 gi|255300319|gb|EET79592.1| DNA repair protein RadA [Campylobacter showae RM3277]
          Length = 446

 Score = 59.5 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 79/215 (36%), Gaps = 19/215 (8%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
            L +I +   K ++ +  S+  I E +  +S+ +  LD+ LG GG  +G +V I G    
Sbjct: 43  TLKEISKSSAKPSLAKQISEVEI-EKVTRISTENSELDLVLG-GGVVEGSLVLIGGSPGI 100

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GK+TL L   +     G    +V  E +   I  R     L  +        E  LE   
Sbjct: 101 GKSTLLLKIASNFAAQGKKTLYVSGEESASQIKMRAQ--RLDAVKDGLFLLTEILLENIL 158

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
             VR     I+VIDS+  L            S        + +        +++++ I V
Sbjct: 159 AEVRKNEYKILVIDSIQTLYSEKIASAPGSVSQVREITFELMR--------LAKNENICV 210

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
           FI     K G +        G   L+    V L  
Sbjct: 211 FIIGHITKDGSI-------AGPRILEHMVDVVLYF 238


>gi|86158035|ref|YP_464820.1| hypothetical protein Adeh_1610 [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774546|gb|ABC81383.1| hypothetical protein Adeh_1610 [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 226

 Score = 59.5 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            V SG   +D AL  GGFP+G + E+ G  +SGKT +AL  +A+        A+VD    
Sbjct: 31  CVPSGLAEVDAALPGGGFPRGALCELAGGPASGKTAVALSLLARLGPED-LSAWVDVRGD 89

Query: 107 LDSIYARKLGVDLKNLLISQPDT 129
           L    A   GVDL  LL+ +P +
Sbjct: 90  LYPPAAAARGVDLARLLVVRPGS 112


>gi|229827964|ref|ZP_04454033.1| hypothetical protein GCWU000342_00012 [Shuttleworthia satelles DSM
           14600]
 gi|229792558|gb|EEP28672.1| hypothetical protein GCWU000342_00012 [Shuttleworthia satelles DSM
           14600]
          Length = 459

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 57/161 (35%), Gaps = 11/161 (6%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + +SSG   LD  LG GG  +G +V + G    GK+TL L              +V  E 
Sbjct: 68  KRISSGMPELDRVLG-GGIVQGSMVLVGGDPGIGKSTLLLQVCRNLCSRKVDVLYVSGEE 126

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +L  I  R     +           E  L+I   +V      ++VIDS+  +        
Sbjct: 127 SLQQIKIRA--DRMGTFDDQLSLLCETNLDIIRSVVDRSRPRVLVIDSIQTMYSETVGSA 184

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
               S       ++ Q        I++   I VFI     K
Sbjct: 185 PGSVSQVRESTAVLMQ--------IAKGMNITVFIVGHVTK 217


>gi|323309329|gb|EGA62547.1| Dmc1p [Saccharomyces cerevisiae FostersO]
          Length = 221

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 80/222 (36%), Gaps = 31/222 (13%)

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKLGVDLK 120
             I E++G    GKT ++      +Q         G  A++D E        +++    +
Sbjct: 1   MSITEVFGEFRCGKTQMSHTLCVTTQLPREMGGGEGKVAYIDTEGTFRPXRIKQIAEGYE 60

Query: 121 --------NLLISQPDTGEQALEITDM---LVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
                   N+  ++    E  +E+ +     + SG   +IV+DS+ A   R +  G    
Sbjct: 61  LDPESCLANVSYARALNSEHQMELVEQLGEELSSGDYRLIVVDSIMA-NFRVDYCGRGEL 119

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM----FGSPETTTGGNALKF 225
           S    + + ++Q L KL          +   NQ++   G              GG+ L  
Sbjct: 120 S---ERQQKLNQHLFKLNRLAEEFNVAVFLTNQVQSDPGASALFASADGRKPIGGHVLAH 176

Query: 226 YSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
            S+ R+ +R      RV  ++D   +   +    + +  +  
Sbjct: 177 ASATRILLRKGRGDERVAKLQDSPDMPEKECVYVIGEKGITD 218


>gi|198438041|ref|XP_002130341.1| PREDICTED: similar to Rad51 homolog c [Ciona intestinalis]
          Length = 391

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 73/220 (33%), Gaps = 36/220 (16%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL------HTIAQSQKTGGTCAFV 101
           +S+ S  LD  LG GG   G I EI G  S+GKT L        H   +    GG   ++
Sbjct: 19  ISTFSSNLDSLLG-GGVKVGSITEIAGESSTGKTQLCFQLATNAHIHTKYGGVGGETVYI 77

Query: 102 DAEHALDSIYARKL-------------------GVDLKNLLISQPDTGEQALEI---TDM 139
           D E    +    ++                      L  + + +     Q L +      
Sbjct: 78  DTEMTFKTERIGQIAQAMVHHFERTKHATDMSADTVLSGIYLFRCIKMVQLLAVSYQLFE 137

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
            V+S     +VI    A   RAE           ++ +L++     L    S     +V 
Sbjct: 138 FVKSHPKVKLVIVDSIAQXXRAE-------EDMKIRNKLLNNLAANLRKIASLLNVAVVL 190

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           +NQ+  +      S      G +       +L + ++  +
Sbjct: 191 VNQVTTRFDEYGNSCMVPALGESWSNIPHTKLFLYKLQGL 230


>gi|330837799|ref|YP_004412440.1| DNA repair protein RadA [Spirochaeta coccoides DSM 17374]
 gi|329749702|gb|AEC03058.1| DNA repair protein RadA [Spirochaeta coccoides DSM 17374]
          Length = 454

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 84/245 (34%), Gaps = 22/245 (8%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   LD  LG GG  +G  V + G    GK+TL L  + Q    G    +V  E +   
Sbjct: 73  TGMTELDRVLG-GGVMRGASVLLGGEPGIGKSTLMLQVLGQCGAAGHKVLYVSGEESSAQ 131

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           I  R   +D+   L       E  LE     + S + D++VIDSV  L   A I    G 
Sbjct: 132 IKLRAQRLDVP--LNKVDVYCETRLEELASTILSSSPDVLVIDSVQTLWSSA-IPSAPGT 188

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS- 228
                    +     +L     +S+  +  I  +  +  +             L F  + 
Sbjct: 189 V------NQIRACCMELVGLAKQSETAIFLIGHVTKEGQLAGPKVIEHLVDTVLYFEQAS 242

Query: 229 -----VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
                VR +  R G++       G    +   K   A P     F     +G++  G   
Sbjct: 243 SGIRLVRAEKNRFGTV----DEIGI--FLMGEKGLTAVPDPSGFFLSRRNDGLTPAGIAY 296

Query: 284 DLGVK 288
              V+
Sbjct: 297 TAVVE 301


>gi|292670237|ref|ZP_06603663.1| DNA repair protein RadA [Selenomonas noxia ATCC 43541]
 gi|292648189|gb|EFF66161.1| DNA repair protein RadA [Selenomonas noxia ATCC 43541]
          Length = 458

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 56/150 (37%), Gaps = 4/150 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
             E +   S+GS  LD  LG GG   G +V I G    GK++L L   A   + G    +
Sbjct: 64  TAEDLPRFSTGSGELDRVLG-GGVIPGSMVLIVGDPGVGKSSLTLRVSADIARAGRRVLY 122

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E +   I  R     L+ +        E  L+     V     ++ +IDS+  +  R
Sbjct: 123 VTGEESARQIRMRA--DRLQAIADDLLVVSETNLDAICAHVEHEQPELFIIDSIQTMY-R 179

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSI 190
            +IE   G      +  +    + K     
Sbjct: 180 PDIESAPGSVSQVRECAMELMRVAKTAGIA 209


>gi|223040591|ref|ZP_03610862.1| DNA repair protein RadA [Campylobacter rectus RM3267]
 gi|222878139|gb|EEF13249.1| DNA repair protein RadA [Campylobacter rectus RM3267]
          Length = 446

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 79/215 (36%), Gaps = 19/215 (8%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
            L +I +   K ++ +  S+  I E +  +S+ +  LD+ LG GG  +G +V I G    
Sbjct: 43  TLKEISKSSAKPSLAKQISEIEI-EKVTRISTQNSELDLVLG-GGVVEGSLVLIGGSPGI 100

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GK+TL L   +     G    +V  E +   I  R     L  +        E  LE   
Sbjct: 101 GKSTLLLKIASNFAAQGKKTLYVSGEESASQIKMRAQ--RLDAVKDGLFLLTEILLENIL 158

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
             VR     I+VIDS+  L            S        + +        +++++ I V
Sbjct: 159 AEVRKNEYKILVIDSIQTLYSEKIASAPGSVSQVREITFELMR--------LAKNENICV 210

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
           FI     K G +        G   L+    V L  
Sbjct: 211 FIIGHITKDGSI-------AGPRILEHMVDVVLYF 238


>gi|259047821|ref|ZP_05738222.1| DNA repair protein RadA [Granulicatella adiacens ATCC 49175]
 gi|259035498|gb|EEW36753.1| DNA repair protein RadA [Granulicatella adiacens ATCC 49175]
          Length = 429

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 54/235 (22%), Positives = 85/235 (36%), Gaps = 28/235 (11%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M+  KE     K  +L   + Q +  + K   M+L      +E +  V +    LD  LG
Sbjct: 1   MEEFKETTSNTKRPSL---VQQSEEAH-KTKPMRL--DQVSYERVNRVKTSISELDRVLG 54

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YARKLGVD 118
            GG   G +V I G    GK+TL L   ++ Q+T GT  +V  E +   I   A +LG+ 
Sbjct: 55  -GGVVPGSLVLIGGDPGIGKSTLLLQVSSELQQTQGTVLYVSGEESASQIKMRAERLGMQ 113

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
                I         LE     V +   D ++IDS+  +T           S        
Sbjct: 114 ADGFYIYAETN----LEDIVAQVEALKPDYVIIDSIQTMTHPQANGVAGSVSHVREATAT 169

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
           + +        +++   I +FI     K G +        G   L+      L  
Sbjct: 170 LMR--------LAKLNQIAIFIVGHVTKEGAL-------AGPRMLEHMVDTVLYF 209


>gi|238916636|ref|YP_002930153.1| methylated-DNA-[protein]-cysteine S-methyltransferase [Eubacterium
           eligens ATCC 27750]
 gi|238871996|gb|ACR71706.1| methylated-DNA-[protein]-cysteine S-methyltransferase [Eubacterium
           eligens ATCC 27750]
          Length = 459

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 69/204 (33%), Gaps = 3/204 (1%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
               FE  +  S+G   LD  LG GG   G +V + G    GK+TL L         G  
Sbjct: 67  NSVSFEENDRTSTGIAELDRVLG-GGIVAGSLVLVGGDPGIGKSTLLLQMCYNLSAEGKD 125

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
             ++  E +L  I  R     +     +     E +L+  + ++     +I++IDS+  +
Sbjct: 126 VLYISGEESLKQIKLRA--DRIGKCSGTLKLLCETSLDSIEDILTRNKPEIVIIDSIQTM 183

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
                       S       ++ Q  + L  +I     +         ++          
Sbjct: 184 YKEDVAAAPGSVSQVRETTSILMQLAKGLNITIFIVGHVTKEGTVAGPRMLEHMVDTVLY 243

Query: 218 TGGNALKFYSSVRLDIRRVGSIKD 241
             G+    Y  +R    R GS  +
Sbjct: 244 FEGDRYASYRILRGVKNRFGSTNE 267


>gi|145353002|ref|XP_001420821.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581056|gb|ABO99114.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 358

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 68/224 (30%), Gaps = 49/224 (21%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDA 103
           +    LD ALG GG   G I E+ G    GKT +A+     +Q        GG   +VD 
Sbjct: 98  TFCEALDDALG-GGAASGEITELCGCPGIGKTQMAMQLSVSAQTPRAFGGLGGEAVYVDT 156

Query: 104 EHALDSIY------------------------------------ARKLGVDLKNLLISQP 127
           E +  +                                         +   +      + 
Sbjct: 157 EGSFTAERAMDMAEALAEHLGRCAKRCEDEDARREMEAALETCAPEAMLRGIHLFRCHEV 216

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
                ALE     +       +V+    A   R + +         ++  ++S+   +L 
Sbjct: 217 TELLAALETLGEFIAERPKVRLVVIDSVAFHFRQDFQD------MALRTTILSKMTNRLM 270

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
           S  +  +  +V +NQ+ +K      +      G +     + R+
Sbjct: 271 SIATTQQVAVVTVNQVTVKPQRDGSARLVPALGESYAHACTTRV 314


>gi|298714477|emb|CBJ27499.1| Rad51 DNA recombinase 2 [Ectocarpus siliculosus]
          Length = 335

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 62/191 (32%), Gaps = 36/191 (18%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQKTGGT-----CA 99
           V++G   LD AL  GGFP G I E+ GP   GKT   L          K GG        
Sbjct: 85  VATGIQPLDDAL-QGGFPTGMITELVGPAGIGKTQTCLQVAAQACLPAKLGGLGEDAGVV 143

Query: 100 FVDAEHALDSIY----------------------ARKLGVDLKNLLISQPDTGEQALEIT 137
           ++D E                               +L   +    +         LE  
Sbjct: 144 YLDTERKFSPDRLVEIASERHPGHYGEFSTEKGSMERLLNQVTVFPVDNSAALVDRLETL 203

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
              +    V +IV+DS+AAL  R     D        +  L+++    L S       ++
Sbjct: 204 QARMIESNVRLIVLDSIAALARR-----DFAREDTLSRQELLTRQAAVLKSLAYTFSAVV 258

Query: 198 VFINQMRMKIG 208
           +  NQ+     
Sbjct: 259 LVTNQVTTSFY 269


>gi|327298717|ref|XP_003234052.1| hypothetical protein TERG_05919 [Trichophyton rubrum CBS 118892]
 gi|326464230|gb|EGD89683.1| hypothetical protein TERG_05919 [Trichophyton rubrum CBS 118892]
          Length = 484

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 75/201 (37%), Gaps = 32/201 (15%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL------- 115
           G  +G I E+ GP  SGKT+LA+ T   + K G T  ++D    +      K+       
Sbjct: 106 GIRRGEITELSGPRGSGKTSLAMTTAVNALKQGETVIWIDTAGPICMSRFEKMLSRDSNP 165

Query: 116 ---GVDLKNLLISQPDTGEQALEITDMLV---RSGAVDIIVIDSVAALT---PRAEIEGD 166
                 L+NLL  QP T    L +    +         +IV+DS++ L     R+++   
Sbjct: 166 LETQERLQNLLHFQPTTLAHLLALISHPIADFPPPNTGLIVVDSISCLFGSEFRSKLPAK 225

Query: 167 MGE--------SLPGMQARLMSQALR-------KLTSSISRSKCILVFINQMRMKIGVMF 211
           +G+        S    +A+      +        L +  SR  C ++ +N+M  +     
Sbjct: 226 LGKGKDLPGAGSRANKEAQESKLWWKLIGSLSSNLNALASRFDCAVIVVNEMVTRFRSGQ 285

Query: 212 GSP-ETTTGGNALKFYSSVRL 231
                    G       + R+
Sbjct: 286 KPMLHVAISGYTWDTSVATRV 306


>gi|62002241|gb|AAX58722.1| RecA [Lactobacillus plantarum]
          Length = 68

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/67 (64%), Positives = 55/67 (82%)

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI D LV SGAVDI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALR L+ ++++ 
Sbjct: 2   LEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRTLSRTLNKP 61

Query: 194 KCILVFI 200
             I +FI
Sbjct: 62  MTIALFI 68


>gi|198451235|ref|XP_001358289.2| GA15983 [Drosophila pseudoobscura pseudoobscura]
 gi|198131396|gb|EAL27427.2| GA15983 [Drosophila pseudoobscura pseudoobscura]
          Length = 254

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 81/231 (35%), Gaps = 28/231 (12%)

Query: 27  YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           + K  + +L  + S     + +++G   LD  LG GG    +I E+ G   +GKT + L 
Sbjct: 14  FNKSCLDRLRERQS-----KKIATGHKSLDRHLG-GGISLRQITELVGNSGTGKTKMCLQ 67

Query: 87  TIAQSQ------KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE--QALEITD 138
                Q         G   F+D          ++L  DL+     +    +  + L+   
Sbjct: 68  LCLNVQIPKTAGGLEGAALFIDTRQDFHPDRLQELARDLEKEYKQRAPDFQASKMLQNVH 127

Query: 139 MLVRSGAVDII--VIDSVAALTPRAEIEGDMGESLPG---------MQARLMSQALRKLT 187
            +    AV ++  V+ S   L     I+  + +SL            +  L+ + +  + 
Sbjct: 128 YVSCPNAVQLMATVLSSYRHLIAHPNIKVIVIDSLAFSLRMLDDGAQRFELLLELVESMR 187

Query: 188 SSISRSKCILVFINQMRMK-IGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
             +   +   V  N +  + IG  F        G       + R+   R G
Sbjct: 188 QLLREHEVAWVVTNVLTHRCIGDQFHV--VPALGEMYSHLINERIWFSRNG 236


>gi|154289413|ref|XP_001545330.1| hypothetical protein BC1G_16151 [Botryotinia fuckeliana B05.10]
 gi|150849393|gb|EDN24586.1| hypothetical protein BC1G_16151 [Botryotinia fuckeliana B05.10]
          Length = 383

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 69/196 (35%), Gaps = 39/196 (19%)

Query: 44  GIEVVSSGSLGLDIAL--------------GIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
               +S+G   LD+AL                GG P+G++ EIYGP   GKTTL +H  A
Sbjct: 17  PTRCISTGLSLLDLALQNKDPLQVSTSVDHNHGGIPRGKVTEIYGPPGVGKTTLGMHLAA 76

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKL--------------GVDLKNLLISQPDTGEQALE 135
           +         +VDA H +      ++                 L N       T    L 
Sbjct: 77  RVLHQNENVVWVDASHPISGPRFSQILQESPSTSPEPLNNDTLLSNFNHFTTPTLSHLLA 136

Query: 136 ITDMLVRSGAV---DIIVIDSVAAL----TPRAEI----EGDMGESLPGMQARLMSQALR 184
           +     ++       +I+IDS + L     PR  +        G   P  +   + Q L 
Sbjct: 137 LLTYTTQNFPPENTSLIIIDSFSTLIDSAFPRNAVSTSTPKKPGVPNPSSRKFPLLQYLI 196

Query: 185 KLTSSISRSKCILVFI 200
                ++ ++ I + I
Sbjct: 197 NALQKLATTRNIAIII 212


>gi|126466020|ref|YP_001041129.1| circadian clock protein, KaiC [Staphylothermus marinus F1]
 gi|126014843|gb|ABN70221.1| putative circadian clock protein, KaiC [Staphylothermus marinus F1]
          Length = 280

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 55/150 (36%), Gaps = 3/150 (2%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE + +G  GLD  L  GG P+G +V + G   +GKT   +H I +  + G    +V  
Sbjct: 5   SIERIPTGVKGLDEIL-RGGIPRGFVVAVVGEPGTGKTVFCIHFIGKGLEMGDKGIYVTT 63

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E + +SI  +    ++              +    M  R     +  +D    L+   E 
Sbjct: 64  EESRESIIRQAAMFNIDLRKYLDEGNLV--IIDALMEERGDPWSLRELDIEELLSKIIEA 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRS 193
           +  +G     +    MS       +   + 
Sbjct: 122 KKYLGYGHARLVIDSMSAFWLDKPAMARKY 151


>gi|54400704|ref|NP_001006101.1| DNA repair protein RAD51 homolog 3 [Danio rerio]
 gi|53734042|gb|AAH83214.1| Rad51 homolog C (S. cerevisiae) [Danio rerio]
 gi|182888768|gb|AAI64186.1| Rad51c protein [Danio rerio]
          Length = 362

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 72/227 (31%), Gaps = 43/227 (18%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAF 100
            + +   GLD A+G GG P G+  EI G    GKT L +      Q        GG   +
Sbjct: 85  SIVTFCSGLDDAIG-GGVPVGKTTEICGAPGVGKTQLCMQLAVDVQIPVFFGGLGGKALY 143

Query: 101 VDAEHALDSIYARKLG--------------------------VDLKNLLISQPDTGEQAL 134
           +D E +        +                             L NL + +     + L
Sbjct: 144 IDTEGSFLVQRVADMAEAAVQHCTLLAEDTEQKGALEELNVEKILSNLFLVRCHDYVKLL 203

Query: 135 E---ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
               +    +       +V+    A   R + E          + RL++   ++L    +
Sbjct: 204 AEVYLLPDFLSEHPEVRLVVIDSIAFPFRHDFED------LSQRTRLLNGLAQQLIQLAT 257

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           + +  +V  NQM  ++           G +     ++ RL +   G 
Sbjct: 258 QHRVAVVLTNQMTTRVSNGQSKLVPALGES-WGHAATQRLILHWEGQ 303


>gi|73670562|ref|YP_306577.1| hypothetical protein Mbar_A3110 [Methanosarcina barkeri str.
           Fusaro]
 gi|72397724|gb|AAZ71997.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 241

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+G  GLD  +  GGFPKG+ + + GP  +GKT L +H + +S K G  C  V   
Sbjct: 1   MESLSTGIEGLDTLMN-GGFPKGKSILVTGPPGAGKTILGIHFLHRSCKEGKKCILVLTR 59

Query: 105 HALDSIYARKLGVDLKNLLISQPDT 129
              + I ++   + L      +   
Sbjct: 60  ELTEDILSQSRSIHLDLRPFVESRH 84


>gi|284043147|ref|YP_003393487.1| DNA repair protein RadA [Conexibacter woesei DSM 14684]
 gi|283947368|gb|ADB50112.1| DNA repair protein RadA [Conexibacter woesei DSM 14684]
          Length = 466

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 54/135 (40%), Gaps = 6/135 (4%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG   +    +E + +G   LD  LG GG   G +V I G    GK+TL    +A    
Sbjct: 69  RLGEVQAS--EVERLPTGIGELDRVLG-GGIVPGSLVLIGGSPGIGKSTLTTMAVANLTG 125

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            G    +V AE +   I  R     L    +  P   E  L      +     D+ VIDS
Sbjct: 126 AGRKTLYVSAEESAAQIKLRA--ERLPGAALEIPVIAETDLGAVLATLERERPDVCVIDS 183

Query: 154 VAALTPRAEIEGDMG 168
           V  L   AE+ G  G
Sbjct: 184 VQTLH-AAELTGAPG 197


>gi|225435171|ref|XP_002281874.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 439

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 76/216 (35%), Gaps = 32/216 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCAFV 101
           + +   GLD ALG GG P G + E+ GP   GKT   L         A      G   ++
Sbjct: 84  LPTRLKGLDEALG-GGIPFGVLTELVGPPGIGKTQFCLKLSLLASLPASYGGLDGRVIYI 142

Query: 102 DAEHALDSIYARKLGVD---------------LKNLLISQPDT---GEQALEITDMLVRS 143
           DAE    S    ++G                    +L+ +P +     ++L+   + +  
Sbjct: 143 DAESKFSSRRMIEIGSKSFPEIFHVEGMAKEMAGRILVLRPTSLSEFTESLQHIKISLLQ 202

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             V ++VIDS+AAL      +G         +   +   +  + S    S+  +V  NQ+
Sbjct: 203 NHVKLLVIDSMAALVTGEYDQGP-------TRQHSLGWHISFVKSVAEFSRIPIVVTNQV 255

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           R +                       R D   V ++
Sbjct: 256 RSQSHDGTSQYSFQVESRGETVDDHTRFDSHLVAAL 291


>gi|242051070|ref|XP_002463279.1| hypothetical protein SORBIDRAFT_02g041080 [Sorghum bicolor]
 gi|241926656|gb|EER99800.1| hypothetical protein SORBIDRAFT_02g041080 [Sorghum bicolor]
          Length = 237

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GTC 98
              E   V+ +G  G+D  LG GG  +G++ E+ GP SSGKT + LH+ + +     G  
Sbjct: 58  DATENKHVLPTGLEGIDTLLG-GGLRQGQLTEVTGPSSSGKTQVCLHSASHAAVKHMGVV 116

Query: 99  AFVDAEHALDSIYARKL 115
            ++D  ++        +
Sbjct: 117 MYLDTSNSFSPSRIATI 133


>gi|169236999|ref|YP_001690199.1| DNA repair and recombination protein RadA [Halobacterium salinarum
           R1]
 gi|13878695|sp|Q9HMM4|RADA_HALSA RecName: Full=DNA repair and recombination protein radA
 gi|226736606|sp|B0R7Y4|RADA_HALS3 RecName: Full=DNA repair and recombination protein radA
 gi|167728065|emb|CAP14853.1| DNA repair protein [Halobacterium salinarum R1]
          Length = 343

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 55/274 (20%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG---- 95
              E I  ++     +D  LG GG     I E+YG   +GK+ +        Q       
Sbjct: 74  ERREQIGKLTWNIPEVDDLLG-GGVETQSITEVYGEFGAGKSQVTHQLAVNVQLPTEYGG 132

Query: 96  --GTCAFVDAEHALDSIYARKLGVD--------------------------------LKN 121
             G   F+D+E          +                                   L  
Sbjct: 133 LHGRAVFIDSEDTFRPERIDDMVRGLSDETLQAAMEAHEIEGSTDDEDTLTELVDAFLDK 192

Query: 122 LLISQPDTGEQAL-------EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           + +++       +       EI            ++         RAE  G         
Sbjct: 193 IHVAKGFNSNHQMLLAEKAKEIASEHEDGDWPVRMLTVDSLTAHFRAEYVGR---GELAD 249

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
           + + +++ L  L    +     ++  NQ++      FG P    GGN L   S+ R+ +R
Sbjct: 250 RQQKLNKHLHDLEKVGNLYNAAVLVTNQVQSNPDAFFGDPTKPIGGNILGHKSTFRMYLR 309

Query: 235 RVGSIK------DKDSITGNQTRVKVVKNKMASP 262
           +  + K      D  ++   +  ++V    +   
Sbjct: 310 KSKNDKRIVKLVDAPNLADGEAVMRVQDEGLKPE 343


>gi|261402815|ref|YP_003247039.1| DNA repair and recombination protein RadB [Methanocaldococcus
           vulcanius M7]
 gi|261369808|gb|ACX72557.1| DNA repair and recombination protein RadB [Methanocaldococcus
           vulcanius M7]
          Length = 213

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 82/190 (43%), Gaps = 17/190 (8%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           DI LG     KG I +IYGP   GKT + L     S   GG   ++D E  +     ++L
Sbjct: 4   DILLGNAN--KGMITQIYGPPGVGKTNICLINTINSINQGGKVIYLDTEGGMSIERIKQL 61

Query: 116 GVD-----LKNLLISQPDTGEQALEITDMLVR--SGAVDIIVIDSVAALTPRAEIEGDMG 168
             +     L+N++I       +   I    +   +  V++IV+D++ +L  + E+  +  
Sbjct: 62  APENYKNILENMIIYNVFDFYEQNNIIQKEIPLIANNVNLIVVDNITSLY-KLELSDEAN 120

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
           +++     +++   ++ L          ++  NQ++  +          +GG  L+++S 
Sbjct: 121 KNIL--LNKMLGNQVKTLLKLAKTKNLAVIITNQVKETVN-----GFEASGGRLLEYWSK 173

Query: 229 VRLDIRRVGS 238
             + + ++  
Sbjct: 174 CIIRLEKLEK 183


>gi|225027631|ref|ZP_03716823.1| hypothetical protein EUBHAL_01888 [Eubacterium hallii DSM 3353]
 gi|224955040|gb|EEG36249.1| hypothetical protein EUBHAL_01888 [Eubacterium hallii DSM 3353]
          Length = 479

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 57/145 (39%), Gaps = 7/145 (4%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E  +  SSG   LD  LG GG  KG +  + G    GK+TL L        +G    +V
Sbjct: 89  MEEEDRSSSGIPELDRVLG-GGIVKGSLTLVGGDPGIGKSTLLLQICRYQANSGKKVVYV 147

Query: 102 DAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  I   A++LG   +N+ +        A E     VR    D++V+DSV  +  
Sbjct: 148 SGEESLKQIKMRAQRLGGFKQNVFLLCETDINAAAE----AVREAKPDMVVVDSVQTMYS 203

Query: 160 RAEIEGDMGESLPGMQARLMSQALR 184
                     S       ++ Q  +
Sbjct: 204 EEITSAAGSVSQVREVTSVLMQLAK 228


>gi|147858028|emb|CAN80345.1| hypothetical protein VITISV_003133 [Vitis vinifera]
          Length = 1051

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 54/142 (38%), Gaps = 4/142 (2%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L       +  +V+S+G  G+D+ L  GG   G + E+ GP SSGKT + L   +   
Sbjct: 76  MELLEDAQ--QNKQVLSTGCEGIDMLL-QGGLCVGHLTELVGPSSSGKTQICLKVASGVA 132

Query: 93  KTG-GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
               G   F+D  ++   +        + + +  +         ++ +L  S      ++
Sbjct: 133 TRYMGGVVFIDTGNSFSPLRIAHFINQIPDTIFKEVKQNILEKVMSQILCHSVFDIFAML 192

Query: 152 DSVAALTPRAEIEGDMGESLPG 173
           D V  L      +   G     
Sbjct: 193 DVVHQLEYSLRSQVQTGADQVR 214


>gi|94985314|ref|YP_604678.1| DNA repair protein RadA [Deinococcus geothermalis DSM 11300]
 gi|94555595|gb|ABF45509.1| DNA repair protein RadA [Deinococcus geothermalis DSM 11300]
          Length = 449

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 62/159 (38%), Gaps = 12/159 (7%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
             + SG   LD  LG GG   G +  I G    GK+TL L    +  + G T  +V  E 
Sbjct: 73  PRLPSGIPELDRVLG-GGLVAGSVTLIGGEPGIGKSTLLLQVADRLARNGQTVLYVAGEE 131

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +L+ I  R   +++   +     T +   E    L++     + ++DS+  +T  AE  G
Sbjct: 132 SLEQIRLRADRLNVTAEIQ---LTRDTRAEHIAALMQEHRPALCIVDSIQTVTVEAE--G 186

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
             G          + +    LT +   +    V +  + 
Sbjct: 187 APG------GVAQVREGTALLTRAAKETGTATVLVGHVT 219


>gi|161899443|ref|XP_001712948.1| DNA recombination and repair protein [Bigelowiella natans]
 gi|75756442|gb|ABA27336.1| DNA recombination and repair protein [Bigelowiella natans]
          Length = 331

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 73/220 (33%), Gaps = 26/220 (11%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG------GTCAFV 101
           +S+ +  +D  L  GG     + EI+G   +GKT         +              ++
Sbjct: 93  ISTLNKTIDNLL-EGGIESSSVTEIFGESKTGKTQFCHILCVSAMVDNYSFVQTKKVIYI 151

Query: 102 DAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGAVD---IIV 150
           D E         ++           + N+  ++    E   ++        A     +I+
Sbjct: 152 DTEGNFRPERLIEISEKFKINFDFLINNVFYARAFNTEHQFQLLVAAASITAFSNVALII 211

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +DS  AL  R E  G        ++  L+ + LR +          ++  NQ+       
Sbjct: 212 VDSCTALL-RTEYVGR---GELFLRQTLLGKFLRNIQRLGEECNIAILLTNQVVTSNLDG 267

Query: 211 FGS----PETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
                       GG+ +  Y++ R+ +++  S  +   + 
Sbjct: 268 MTFSAASNLKPIGGHIMAHYTNTRIWLKKRTSQYNVMKVI 307


>gi|329766734|ref|ZP_08258277.1| RecA/RadA recombinase-like protein [Candidatus Nitrosoarchaeum
           limnia SFB1]
 gi|329136989|gb|EGG41282.1| RecA/RadA recombinase-like protein [Candidatus Nitrosoarchaeum
           limnia SFB1]
          Length = 219

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 74/202 (36%), Gaps = 16/202 (7%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G   LD  L   G P G I +IYG   +GKT L       + K GGT  + D   + 
Sbjct: 2   ISTGLQKLDDFLSD-GIPNGVITDIYGASGTGKTQLLFQICVNTIKNGGTVLYQDTTGSF 60

Query: 108 DSIY------ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
                      + L  D+   +     T       +  ++ S    +I+ID++  L    
Sbjct: 61  RPERILEIQKKQNLTFDILEKITISRITNTSDQIKSIDMMNSSNFSLIIIDNITDLFS-- 118

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
                  E     +  L  + +  L+      K  ++  N +R   G+   + +T     
Sbjct: 119 --YEYSKEDKTFEKNSLFIRYIHNLSLVAINKKIPIIITNMIRNIDGIEIENMKTAV--- 173

Query: 222 ALKFYSSVRLDIRRVGSIKDKD 243
               ++ +++ +R+  S    +
Sbjct: 174 --DLFTHIKIKLRKTNSKFHGE 193


>gi|168334720|ref|ZP_02692852.1| DNA repair protein RadA [Epulopiscium sp. 'N.t. morphotype B']
          Length = 266

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 72/204 (35%), Gaps = 13/204 (6%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L       E     ++G   LD  LG GG  KG +V + G    GK+TL L       
Sbjct: 52  MKLAEIKLTTED--RTTTGIAELDRVLG-GGIVKGSLVLVGGDPGIGKSTLLLQICQTLG 108

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           + G    +V  E +   I  R   + +    +S     E  +      +++   D+++ID
Sbjct: 109 ELGNAVLYVSGEESCTQIKLRAERLRVTTSXLSLVS--ETTIASVREHIQTVKPDLVIID 166

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           S+  +            S        +         +I++ K I + I     K G + G
Sbjct: 167 SIQTMYDEEVGSAPGSVSQVRQVTHALM--------NIAKGKDITILIVGHVTKEGTLAG 218

Query: 213 SPETTTGGNALKFYSSVRLDIRRV 236
                   + + ++   R    R+
Sbjct: 219 PRVLEHMVDTVLYFEGERHAAFRI 242


>gi|72085537|ref|XP_788113.1| PREDICTED: similar to RAD51L2/RAD51C protein [Strongylocentrotus
           purpuratus]
 gi|115974679|ref|XP_001193914.1| PREDICTED: similar to RAD51L2/RAD51C protein [Strongylocentrotus
           purpuratus]
          Length = 425

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 66/220 (30%), Gaps = 39/220 (17%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG------G 96
           + +  + +    LD  LG GG P  +I EI G    GKT   +      Q         G
Sbjct: 118 QSLPPIITFCEELDEMLG-GGVPMCKITEICGAPGVGKTQTCIQLCVDVQIPASLGGVEG 176

Query: 97  TCAFVDAEHALDSIYARKLG----------------------VDLKNLLISQPDTGEQAL 134
              ++D E +     A  +                         L  +   +     + L
Sbjct: 177 EAVYIDTEGSFIPQRAWGIAQAATEHCHTMGDQAELKDFTTEKILSGIHYFRCHNHVELL 236

Query: 135 E---ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
               +    +       ++I    A   R + +         ++ RL++   +      +
Sbjct: 237 ALVNLLPEFLSKNPKVKLIIVDSIAFHFRHDFDD------MSLRTRLLNGLAQNFIRIAT 290

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
           +    +V  NQM  KIG          G +      ++R+
Sbjct: 291 QYNLAVVLTNQMTTKIGEGTSHLIPALGES-WGHACTIRV 329


>gi|238924656|ref|YP_002938172.1| DNA repair protein RadA [Eubacterium rectale ATCC 33656]
 gi|238876331|gb|ACR76038.1| DNA repair protein RadA [Eubacterium rectale ATCC 33656]
          Length = 456

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 75/194 (38%), Gaps = 11/194 (5%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E  E + +G    D  LG GG  +G +V + G    GK+TL L    +  +      +V 
Sbjct: 68  EKEERIVTGIAEFDRVLG-GGIVRGSLVLVGGDPGIGKSTLLLQVCRELSQKKVPLLYVS 126

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E +L  I  R     L +   S     E +L+I   +++    +++VIDS+  +     
Sbjct: 127 GEESLHQIKMRA--DRLGDFTDSLELLCETSLDIAKDVIQRKKPEVVVIDSIQTMYNEEI 184

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
                  S       ++ Q        ++++  I VFI     K G + G        + 
Sbjct: 185 ASAPGSVSQVRETTGVLMQ--------LAKTLGISVFIVGHVTKDGAVAGPRTLEHMVDT 236

Query: 223 LKFYSSVRLDIRRV 236
           + ++   R +  R+
Sbjct: 237 VLYFEGDRYESYRI 250


>gi|167748023|ref|ZP_02420150.1| hypothetical protein ANACAC_02761 [Anaerostipes caccae DSM 14662]
 gi|317472495|ref|ZP_07931816.1| DNA repair protein RadA [Anaerostipes sp. 3_2_56FAA]
 gi|167652541|gb|EDR96670.1| hypothetical protein ANACAC_02761 [Anaerostipes caccae DSM 14662]
 gi|316900009|gb|EFV22002.1| DNA repair protein RadA [Anaerostipes sp. 3_2_56FAA]
          Length = 451

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 67/205 (32%), Gaps = 24/205 (11%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           + M +       E  E + +G   LD  LG GG   G +  + G    GK+TL L     
Sbjct: 54  SPMNMSEVSIKSE--ERIPTGIGELDRVLG-GGIVTGSLSLVGGDPGIGKSTLLLQVCRN 110

Query: 91  SQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
                    +V  E +   I   A ++G     LL+      E+ LE     +R    + 
Sbjct: 111 LVNAKRKVLYVSGEESAHQIKMRAERIGAFEDELLLFCETILEEILE----GIRKVRPEF 166

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +VIDS+  +            S        M +        I++ + I VFI     K G
Sbjct: 167 VVIDSIQTMFSEELTAAAGSVSQVREVTAQMMR--------IAKEENIAVFIVGHVTKEG 218

Query: 209 VMFGSPETTTGGNALKFYSSVRLDI 233
                     G   L+      L  
Sbjct: 219 -------VVAGPRTLEHMVDTVLYF 236


>gi|308233966|ref|ZP_07664703.1| RecA protein [Atopobium vaginae DSM 15829]
          Length = 64

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDI 57
          ++ K LE   ++I++ +GKG+IM+ G  G   E +E + +G+L LD+
Sbjct: 19 ERDKQLETTTAEIEKRFGKGSIMKYGDSGPDLE-VEAIPTGALSLDV 64


>gi|291527090|emb|CBK92676.1| DNA repair protein RadA [Eubacterium rectale M104/1]
          Length = 456

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 75/194 (38%), Gaps = 11/194 (5%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E  E + +G    D  LG GG  +G +V + G    GK+TL L    +  +      +V 
Sbjct: 68  EKEERIVTGIAEFDRVLG-GGIVRGSLVLVGGDPGIGKSTLLLQVCRELSQKKVPLLYVS 126

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E +L  I  R     L +   S     E +L+I   +++    +++VIDS+  +     
Sbjct: 127 GEESLHQIKMRA--DRLGDFTDSLELLCETSLDIAKDVIQRKKPEVVVIDSIQTMYNEEI 184

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
                  S       ++ Q        ++++  I VFI     K G + G        + 
Sbjct: 185 ASAPGSVSQVRETTGVLMQ--------LAKTLGISVFIVGHVTKDGAVAGPRTLEHMVDT 236

Query: 223 LKFYSSVRLDIRRV 236
           + ++   R +  R+
Sbjct: 237 VLYFEGDRYESYRI 250


>gi|291526177|emb|CBK91764.1| DNA repair protein RadA [Eubacterium rectale DSM 17629]
          Length = 456

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 75/194 (38%), Gaps = 11/194 (5%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E  E + +G    D  LG GG  +G +V + G    GK+TL L    +  +      +V 
Sbjct: 68  EKEERIVTGIAEFDRVLG-GGIVRGSLVLVGGDPGIGKSTLLLQVCRELSQKKVPLLYVS 126

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E +L  I  R     L +   S     E +L+I   +++    +++VIDS+  +     
Sbjct: 127 GEESLHQIKMRA--DRLGDFTDSLELLCETSLDIAKDVIQRKKPEVVVIDSIQTMYNEEI 184

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
                  S       ++ Q        ++++  I VFI     K G + G        + 
Sbjct: 185 ASAPGSVSQVRETTGVLMQ--------LAKTLGISVFIVGHVTKDGAVAGPRTLEHMVDT 236

Query: 223 LKFYSSVRLDIRRV 236
           + ++   R +  R+
Sbjct: 237 VLYFEGDRYESYRI 250


>gi|192288442|ref|YP_001989047.1| circadian clock protein KaiC [Rhodopseudomonas palustris TIE-1]
 gi|192282191|gb|ACE98571.1| putative circadian clock protein, KaiC [Rhodopseudomonas palustris
           TIE-1]
          Length = 563

 Score = 57.9 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 66/176 (37%), Gaps = 14/176 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           +  LG    + E  E +SSG   LD  L  GGF +G  V I G   SGK++LA   +  +
Sbjct: 234 VSSLGLSHKVHE--ERISSGVPDLDAMLSGGGFYRGTSVLITGVAGSGKSSLACMMVDAA 291

Query: 92  QKTGGTCAFVDAEHALDS--IYARKLGVDLKNLLIS----------QPDTGEQALEITDM 139
            + G    ++  E +        + +G DL   L +             + E  L +   
Sbjct: 292 CRRGEKALYLSFEESEAQTVRNMKSVGTDLGRWLSTGQLRYIGARPTFYSLEMHLAVMLR 351

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
            V     D++V+D ++A T   +I       L  +     +      T     ++ 
Sbjct: 352 EVARFKPDLVVLDPISAFTESGQIGEVQSMLLRIVDYLKSNGITGAFTHLAHGAQT 407


>gi|57641867|ref|YP_184345.1| ATPase [Thermococcus kodakarensis KOD1]
 gi|57160191|dbj|BAD86121.1| ATPase, RecA superfamily [Thermococcus kodakarensis KOD1]
          Length = 448

 Score = 57.9 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 61/173 (35%), Gaps = 2/173 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E++ +G   LD AL  GGF +G  + + G   SGKT LA+H +  + + G    +V   
Sbjct: 1   MELIPTGIPSLDKALN-GGFSRGSTILLAGNPGSGKTHLAIHVLYNNMRRGLKGVYVSFA 59

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
                 Y   L   +    +   +       +T        +   +ID +    P   + 
Sbjct: 60  ETKKQFYRNALQSGIDLSKMEGVNLFRFYDMLTVPKDELEGMIAFLIDDIVEFKPDIIVF 119

Query: 165 GDMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPET 216
             +        +  L S     +   ++    + + I+++      +    E 
Sbjct: 120 DSVTVFGQMFGEEYLRSFLHSIIGRLVNAFDALAILIDEIPYGEKRVGFGLEE 172



 Score = 42.5 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 73/184 (39%), Gaps = 11/184 (5%)

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA--RKLGVDLKNLLI 124
           G I  I GP  SGKT LAL+  +   K+G    ++  E +L ++     KLG++    ++
Sbjct: 256 GSITLIAGPTGSGKTILALNLASNLSKSGKKVLYIAYEESLAALRDTLEKLGLEENFRIV 315

Query: 125 SQPD---TGEQALEITDMLVRSGAVDIIVIDSVAALTP---RAEIEGDMGESLPGMQARL 178
           S      T  +   +   L+     D++VIDS++A+       E    +       + + 
Sbjct: 316 SMVPEGRTPVEYYALIKDLIEKEGFDVLVIDSLSAMESHMDEKEFIKAVRYLQLLTKEKG 375

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG- 237
           ++  L  +T S  +        + +   +  +        G +  +    ++    R   
Sbjct: 376 VTFVLTYITGSTYKLATTG--FSTLVDNLIFLTYDVPERVGESLKRHILVLKARRSRNDP 433

Query: 238 SIKD 241
           ++KD
Sbjct: 434 TLKD 437


>gi|39933089|ref|NP_945365.1| circadian clock protein KaiC [Rhodopseudomonas palustris CGA009]
 gi|39652714|emb|CAE25453.1| circadian clock protein [Rhodopseudomonas palustris CGA009]
          Length = 563

 Score = 57.9 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 66/176 (37%), Gaps = 14/176 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           +  LG    + E  E +SSG   LD  L  GGF +G  V I G   SGK++LA   +  +
Sbjct: 234 VSSLGLSHKVHE--ERISSGVPDLDAMLSGGGFYRGTSVLITGVAGSGKSSLACMMVDAA 291

Query: 92  QKTGGTCAFVDAEHALDS--IYARKLGVDLKNLLIS----------QPDTGEQALEITDM 139
            + G    ++  E +        + +G DL   L +             + E  L +   
Sbjct: 292 CRRGEKALYLSFEESEAQTVRNMKSVGTDLGRWLSTGQLRYIGARPTFYSLEMHLAVMLR 351

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
            V     D++V+D ++A T   +I       L  +     +      T     ++ 
Sbjct: 352 EVARFKPDLVVLDPISAFTESGQIGEVQSMLLRIVDYLKSNGITGAFTHLAHGAQT 407


>gi|298711280|emb|CBJ26525.1| Meiotic recombination protein DMC1/LIM15 homolog, putative
           [Ectocarpus siliculosus]
          Length = 251

 Score = 57.9 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 48/135 (35%), Gaps = 13/135 (9%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
              E +  V +GS  LD  LG GG   G I E +G   SGKT L       SQ       
Sbjct: 105 QAREKVIKVHTGSKQLDALLG-GGIETGSITEFFGEFRSGKTQLCHTLCVTSQLSKESGG 163

Query: 94  TGGTCAFVDAEHALDSIYA----RKLGVDLKNLLISQPDT--GEQALEITDMLVRSGAVD 147
             G   ++D E             + G+D    L +   T       +I    VR   V+
Sbjct: 164 AEGRVVYMDTEGNFRPERVEAIAERFGLDPTETLENVIVTRVFNHEQQIDRAHVRISVVN 223

Query: 148 IIVIDSVAALTPRAE 162
           + V+ +   +    E
Sbjct: 224 VGVLQNARNVKTSPE 238


>gi|238926250|ref|ZP_04658010.1| DNA repair protein RadA [Selenomonas flueggei ATCC 43531]
 gi|238885930|gb|EEQ49568.1| DNA repair protein RadA [Selenomonas flueggei ATCC 43531]
          Length = 457

 Score = 57.9 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 55/148 (37%), Gaps = 4/148 (2%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +   S+GS  LD  LG GG   G IV I G    GK++L L   A   + G    +V 
Sbjct: 65  EDLPRFSTGSGELDRVLG-GGVIPGSIVLIVGDPGVGKSSLTLRASADIARKGRRVLYVT 123

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E +   I  R     L+ +        E  L+            +I+IDS+  +  R +
Sbjct: 124 GEESARQIRMRA--DRLQAVADELLVVSETNLDAICAHAEHVKPALIIIDSIQTMY-RPD 180

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSI 190
           IE   G      +  +    + K     
Sbjct: 181 IESAPGSVSQVRECAMELMRVAKTAGIA 208


>gi|329766408|ref|ZP_08257954.1| DNA repair and recombination protein RadA [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329137177|gb|EGG41467.1| DNA repair and recombination protein RadA [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 268

 Score = 57.9 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 58/166 (34%), Gaps = 15/166 (9%)

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG--------VDLKNLLISQPDTGEQA-- 133
            +          G   ++D E+         +           L  +++++         
Sbjct: 1   MVQKPKTEGGLDGGVLYIDTENTFRPERIVSIAQAHEMDPEKVLDRIIVARAYNSAHQTL 60

Query: 134 -LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
            LE    ++    + +IV+DS   L  RAE    +G      + + ++  +  L+     
Sbjct: 61  ILEEAGPVIEENNIKLIVVDSAVGLF-RAEY---LGRGTLSNRQQKLNHFVHMLSRIAET 116

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
             C  +  NQ+     V FG P    GGN +   S+ R+  ++ G 
Sbjct: 117 YNCAAIATNQVMASPDVFFGDPTRPIGGNVVAHTSTYRIYFKKSGK 162


>gi|160935531|ref|ZP_02082906.1| hypothetical protein CLOBOL_00421 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441275|gb|EDP18985.1| hypothetical protein CLOBOL_00421 [Clostridium bolteae ATCC
           BAA-613]
          Length = 462

 Score = 57.9 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 69/192 (35%), Gaps = 20/192 (10%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E  + +S+G   LD  LG  G   G +V + G    GK+TL L         G    ++ 
Sbjct: 75  EEQDRISTGFGELDRVLGD-GIVAGSLVLVGGDPGIGKSTLLLQVCRNLAGAGQRVLYIS 133

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E +L  I  R     +  +        E +LE  +  + +    I VIDS+  +  R E
Sbjct: 134 GEESLKQIKMRA--NRIGPVTGELKFLCETSLEHIERAIDTENPQIAVIDSIQTMY-REE 190

Query: 163 IEGDMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
           I    G  S       ++ Q        I++S+ I +F+     K G          G  
Sbjct: 191 ISSAPGSVSQVRESTGILMQ--------IAKSRGIAIFVVGHVTKEG-------VVAGPR 235

Query: 222 ALKFYSSVRLDI 233
            L+      L  
Sbjct: 236 VLEHMVDTVLYF 247


>gi|305663910|ref|YP_003860198.1| putative circadian clock protein, KaiC [Ignisphaera aggregans DSM
           17230]
 gi|304378479|gb|ADM28318.1| putative circadian clock protein, KaiC [Ignisphaera aggregans DSM
           17230]
          Length = 285

 Score = 57.9 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 5/112 (4%)

Query: 34  QLGSQGSIFEG--IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + GS   I +   I  +S+G   LD AL  GG PKG  V I G   +GK+ L +H     
Sbjct: 5   REGSTTKIPKKEIIHRISTGVSELDRAL-EGGIPKGSWVAITGEPGTGKSILCMHFAWAG 63

Query: 92  QKTGGTCAFVDAEHALDSIYARK--LGVDLKNLLISQPDTGEQALEITDMLV 141
            K G    +V  E     +  +    G+D +   I    + +Q  E     +
Sbjct: 64  IKAGDPVVYVTTEAEFRDVLKQAKMFGMDFEQYRILDISSSKQYQEANPPHI 115


>gi|224051291|ref|XP_002199421.1| PREDICTED: similar to RAD51-like 1 [Taeniopygia guttata]
          Length = 365

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 66/196 (33%), Gaps = 27/196 (13%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI---- 88
           M+L  + S+      +S+   GLD  L  GG P G + EI GP   GKT   +       
Sbjct: 70  MKL--KKSVNPSSAFLSTTLHGLDRVL-HGGVPCGSLTEITGPPGCGKTQFCIMLSVLAT 126

Query: 89  --AQSQKTGGTCAFVDAEHALDSIYARKLGV-------DLKNLLISQPDTGEQALEITDM 139
                    G   ++D E A  +    ++         D    L+    +     E+T  
Sbjct: 127 LPVSMGGLDGAVIYIDTESAFSAERLIEIAANRFPAYFDSDEKLLCMTRSIHLYRELTCC 186

Query: 140 LVRSGAVDI----------IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
            V    + +          ++I    A   R E +  +  +L   ++  +++    L   
Sbjct: 187 SVLKRIMSLEEEVILKKVKLIIIDSVASVVRKEFDTKLQGNL-AERSNFLTRGASVLKYL 245

Query: 190 ISRSKCILVFINQMRM 205
                  ++  NQ+  
Sbjct: 246 AEEFSIPVILTNQITT 261


>gi|219112089|ref|XP_002177796.1| Rad51 DNA recombination/repair protein [Phaeodactylum tricornutum
           CCAP 1055/1]
 gi|217410681|gb|EEC50610.1| Rad51 DNA recombination/repair protein [Phaeodactylum tricornutum
           CCAP 1055/1]
          Length = 363

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 71/237 (29%), Gaps = 41/237 (17%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ---SQKTG 95
               EG   + +    +D  LG GG   G + EI GP   GKT   +            G
Sbjct: 78  EENVEGQGCIITFCRHVDTLLG-GGIAMGELTEIAGPPGVGKTQWGMQLAVDARLPNTFG 136

Query: 96  GTC---AFVDAEHALDSIYARKLGVDL-------------------KNLLISQPDTGEQA 133
           G      +VD E +        +   L                          PDT  Q 
Sbjct: 137 GVAGETVYVDTEGSFSPERCHDMATSLVQHIEAGRRRRQEKGQKLQPMPAWFAPDTILQG 196

Query: 134 LEITDMLVRSGAVDIIVI-------DSVAALTPRAEIEGDMG--------ESLPGMQARL 178
           + +  +   +    ++            A    R  +   M          S    + R 
Sbjct: 197 IHVYRVHDEAAQTSVLYSLPKFLQDRQEAGTPVRLVVVDSMAFHHRAAPPNSDFVGRTRS 256

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
           ++     LT+  ++S   +V INQM  K+     S +    G +     + R+ + R
Sbjct: 257 LTSQAAFLTNLAAQSGIAVVAINQMTTKMTTSEASKQVPALGESWAHAVTTRILLSR 313


>gi|261334168|emb|CBH17162.1| recombinase rad51, putative [Trypanosoma brucei gambiense DAL972]
          Length = 507

 Score = 57.5 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 7/84 (8%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQKT 94
                +GIE V++    LDI LG GG   G + EI GP   GKT L++         ++ 
Sbjct: 96  DAEATKGIENVTTLCRSLDILLG-GGLQVGTLTEICGPPGVGKTQLSMQLAVNCVLPKEL 154

Query: 95  GGT---CAFVDAEHALDSIYARKL 115
           GG    C F+D E +      R++
Sbjct: 155 GGLQGGCLFIDTEGSFLPERFREI 178


>gi|71754847|ref|XP_828338.1| recombinase Rad51 [Trypanosoma brucei TREU927]
 gi|70833724|gb|EAN79226.1| recombinase Rad51, putative [Trypanosoma brucei]
          Length = 507

 Score = 57.5 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 7/84 (8%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQKT 94
                +GIE V++    LDI LG GG   G + EI GP   GKT L++         ++ 
Sbjct: 96  DAEATKGIENVTTLCRSLDILLG-GGLQVGTLTEICGPPGVGKTQLSMQLAVNCVLPKEL 154

Query: 95  GGT---CAFVDAEHALDSIYARKL 115
           GG    C F+D E +      R++
Sbjct: 155 GGLQGGCLFIDTEGSFLPERFREI 178


>gi|207111930|ref|ZP_03246092.1| recA protein [Helicobacter pylori HPKX_438_CA4C1]
          Length = 35

 Score = 57.5 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/35 (80%), Positives = 33/35 (94%)

Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
          LDIALG+GG PKGR++E+YGPESSGKTT+ALH IA
Sbjct: 1  LDIALGLGGVPKGRVIEVYGPESSGKTTVALHMIA 35


>gi|116245799|ref|XP_001230756.1| AGAP003791-PA [Anopheles gambiae str. PEST]
 gi|116130977|gb|EAU77376.1| AGAP003791-PA [Anopheles gambiae str. PEST]
          Length = 290

 Score = 57.5 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 86/278 (30%), Gaps = 55/278 (19%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQKTGGT---CAFVDA 103
           +    LD+ALG  G P+G I E+ GP  SGKT L L     +   Q+ GG      ++D 
Sbjct: 21  TFCRDLDLALGS-GIPEGMITELCGPPGSGKTQLCLQLAVNVQIPQQLGGLQGRAVYLDT 79

Query: 104 EHALDSIYARKL----------------------------GVDLKNLLISQPDTGEQALE 135
            +       +++                               L N+L S      Q LE
Sbjct: 80  NYGFFPQRVQEMAKACHNHCANIALLHKLNPEETLAGFSEATALDNILYSHVTNCTQILE 139

Query: 136 ITDMLVRSGAV----DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
              +L           +IV+DS++ L            +    + + + + L  L     
Sbjct: 140 AIAVLQNRLYDGEKIKLIVLDSLSFLIRNT-------NTRSMKRVKRVHEILTLLHKLAH 192

Query: 192 RSKCILVFINQMRMKIGV--------MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243
           R  C+++  N +  +I                    G +L    + R+ + R  S  D  
Sbjct: 193 RFGCVVIVTNDVTTRISDVDGGGGERPDVPQIVPALGGSLTHKVNQRIFLGRDESHFDAQ 252

Query: 244 SITGNQTRVKVVKNKMASPFKQVE-FDIMYGEGISFFG 280
           S         + K             +     G+   G
Sbjct: 253 SQAPPSYVASIEKGHFLPSVTVAFRIEPAGIRGVKREG 290


>gi|297527309|ref|YP_003669333.1| putative circadian clock protein, KaiC [Staphylothermus hellenicus
           DSM 12710]
 gi|297256225|gb|ADI32434.1| putative circadian clock protein, KaiC [Staphylothermus hellenicus
           DSM 12710]
          Length = 280

 Score = 57.5 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 56/151 (37%), Gaps = 3/151 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
             IE + +G  GLD  L  GG P+G +V + G   +GKT   +H I +  +TG    +V 
Sbjct: 4   PSIERLPTGIKGLDEIL-RGGIPQGFVVAVVGEPGTGKTVFCIHFIGKGLETGDKGIYVT 62

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E + +SI  +    ++              +    M  R     +  +D    L+   E
Sbjct: 63  TEESRESIIRQAAMFNIDLRKHVDEGNLV--IIDALMEERGDPWSLRELDIEELLSKIIE 120

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRS 193
            +  +G     +    MS       +   + 
Sbjct: 121 AKKYLGYGHARLVIDSMSAFWLDKPAMARKY 151


>gi|2262211|gb|AAB63359.1| RecA-like protein [Mus musculus]
          Length = 350

 Score = 57.5 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 65/197 (32%), Gaps = 27/197 (13%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI----- 88
           +L ++ S       +S+    LD AL  GG P G + EI GP   GKT   +        
Sbjct: 69  ELKTRRSAHLSPAFLSTTLCALDEAL-HGGVPCGSLTEITGPPGCGKTQFCIMMSVLATL 127

Query: 89  -AQSQKTGGTCAFVDAEHALDSIYARKL------------------GVDLKNLLISQPDT 129
                   G   ++D E A  +    ++                     +        + 
Sbjct: 128 PTSLGGLEGAVVYIDTESAFTAERLVEIAESRFPQYFNTEEKLLLTSSRVHLCRELTCEG 187

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
             Q LE  +  + S  V ++++DS+A++  +       G      + + + +    L   
Sbjct: 188 LLQRLESLEEEIISKGVKLVIVDSIASVVRKEFDPKLQGN--IKERNKFLGKGASLLKYL 245

Query: 190 ISRSKCILVFINQMRMK 206
                  ++  NQ+   
Sbjct: 246 AGEFSIPVILTNQITTH 262


>gi|31982072|ref|NP_033040.2| DNA repair protein RAD51 homolog 2 [Mus musculus]
 gi|38258893|sp|O35719|RA51B_MOUSE RecName: Full=DNA repair protein RAD51 homolog 2; Short=R51H2;
           AltName: Full=RAD51 homolog B; AltName: Full=RAD51-like
           protein 1
 gi|26328691|dbj|BAC28084.1| unnamed protein product [Mus musculus]
 gi|148670701|gb|EDL02648.1| RAD51-like 1 (S. cerevisiae), isoform CRA_b [Mus musculus]
          Length = 350

 Score = 57.5 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 65/197 (32%), Gaps = 27/197 (13%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI----- 88
           +L ++ S       +S+    LD AL  GG P G + EI GP   GKT   +        
Sbjct: 69  ELKTRRSAHLSPAFLSTTLCALDEAL-HGGVPCGSLTEITGPPGCGKTQFCIMMSVLATL 127

Query: 89  -AQSQKTGGTCAFVDAEHALDSIYARKL------------------GVDLKNLLISQPDT 129
                   G   ++D E A  +    ++                     +        + 
Sbjct: 128 PTSLGGLEGAVVYIDTESAFTAERLVEIAESRFPQYFNTEEKLLLTSSRVHLCRELTCEG 187

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
             Q LE  +  + S  V ++++DS+A++  +       G      + + + +    L   
Sbjct: 188 LLQRLESLEEEIISKGVKLVIVDSIASVVRKEFDPKLQGN--IKERNKFLGKGASLLKYL 245

Query: 190 ISRSKCILVFINQMRMK 206
                  ++  NQ+   
Sbjct: 246 AGEFSIPVILTNQITTH 262


>gi|256084116|ref|XP_002578278.1| DNA repair protein rad51 homolog 3 r51h3 [Schistosoma mansoni]
 gi|238663645|emb|CAZ34516.1| DNA repair protein rad51 homolog 3, r51h3, putative [Schistosoma
           mansoni]
          Length = 999

 Score = 57.5 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 67/229 (29%), Gaps = 55/229 (24%)

Query: 35  LGSQGSIFEGIEV-------VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           LG+  ++ E   V       + S     D  LG GGFP GR+ E+ G    GKT   L  
Sbjct: 689 LGASQTVDENSPVEGKRYNYIVSMCRSFDDLLG-GGFPTGRLTELCGEPGVGKTQFCLQA 747

Query: 88  IAQSQ------KTGGTCAFVDAEHALDSIYARKLGVDL-KNLLISQPDTGEQA------- 133
               Q         G   F+D E        R++   L  +      ++  +        
Sbjct: 748 CVNVQIPKWFSGLNGQALFLDTEGNFIPERVRQMASALADHCKRHYIESNPERTDESFIK 807

Query: 134 ---------------------------LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
                                          +       +  +++    AL  R + +  
Sbjct: 808 QYCPTVESLMSGIHYIRITDHLKLLAVCRHLEQFCDQHPLIRLIVVDSIALPFRYDFDD- 866

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
                   + RL++   + L     R K  ++  NQ+  K      + E
Sbjct: 867 -----IPQRNRLLASVTQMLLCVAGRQKAAVILTNQITTKFDAKNLNSE 910


>gi|126283010|ref|XP_001378467.1| PREDICTED: similar to RAD51-like 1 (S. cerevisiae), [Monodelphis
           domestica]
          Length = 396

 Score = 57.5 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 79/239 (33%), Gaps = 30/239 (12%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI---- 88
           M+L  + S       +++  + LD AL  GG   G + EI GP   GKT   +       
Sbjct: 70  MKL--EKSGGPSSAFLATTLISLDEAL-HGGVACGSLTEITGPSGCGKTQFCMMMSVLAT 126

Query: 89  --AQSQKTGGTCAFVDAEHALDSIYARKL------------------GVDLKNLLISQPD 128
                    G   ++D E A  +    ++                     +        +
Sbjct: 127 LPTGMGGLEGAVIYIDTESAFSAERLIRIAEFRFPSFFNTEEKLLSMSSKIHLYKELTCN 186

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
              + +E  +  + S  V +++IDSVA++  R E +  +  +    ++  +++    L  
Sbjct: 187 EVLKRIESLEEEIISNRVKLLIIDSVASVV-RKEFDTQLQGN-MRERSNFLAREASLLKY 244

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
                  I++  N+   +        +   GG  L +     L I  +   K       
Sbjct: 245 LAEEFSIIVIVTNKYS-QAYNQHAFQDKAFGGRPLAYTPFEHLQIDFITMSKAGHYKVC 302


>gi|197103244|ref|YP_002128622.1| circadian oscillation regulator KaiC [Phenylobacterium zucineum
           HLK1]
 gi|196480520|gb|ACG80047.1| circadian oscillation regulator KaiC [Phenylobacterium zucineum
           HLK1]
          Length = 504

 Score = 57.5 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 60/165 (36%), Gaps = 2/165 (1%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
                 F   E VSSG   LD  LG GG  +G    I GP  +GK++L L  I  + K G
Sbjct: 245 AEHERDFSPTEPVSSGIGELDALLG-GGLSRGTSTLIMGPSGTGKSSLTLQVIDAALKRG 303

Query: 96  GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
                V  +     + AR  G+ +  L             I    +  G +  ++   V 
Sbjct: 304 EKVLIVSFDETRRVLMARAEGLSID-LGGPVASGQLVLRHIDPAELSPGELIGMIRQHVE 362

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           A      ++   G      +   ++  + +L S + +   + + +
Sbjct: 363 AGAQVVALDSLTGYQNAMPEESYLTLHMHELLSYLGQQGVMTLLV 407



 Score = 39.4 bits (90), Expect = 0.91,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 39 GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
             FE    V SG  GLD  L +GGF +  +  + G   +GKTTL L  +   ++ G
Sbjct: 6  SHEFEDEAPVPSGIAGLDEIL-VGGFSRSNVHLVEGAPGTGKTTLGLQFLLDGRERG 61


>gi|289613894|emb|CBI59263.1| putative RAD55 protein [Sordaria macrospora]
          Length = 441

 Score = 57.5 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 62/187 (33%), Gaps = 33/187 (17%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALG--------IGGFPKGRIVEIYGPESSGKTTLALHTI 88
              +  +    +S+G   LD AL          GG  K +++EI+GP   GKT   +   
Sbjct: 33  DDLNNGDNSPFISTGLDALDAALKPSLDIDIVTGGVQKAQVIEIWGPPGVGKTAFGVQLA 92

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARK------------------LGVDLKNLLISQPDTG 130
                 G    +VD  H +     R                   +   L  L      + 
Sbjct: 93  TNCLGEGKGVVWVDGFHRVPIERLRSVLGSKVKRDKQGEQEDATVDERLDALTHYTCPSL 152

Query: 131 EQALEITDMLVRS---GAVDIIVIDSVAAL----TPRAEIEGDMGESLPGMQARLMSQAL 183
              + +      S       +IV+DS++AL     PR   +  + +S       L ++ L
Sbjct: 153 PHLIALLCRPTPSCVPQNTSLIVVDSLSALVNHAFPRTPEQKKVVDSKGNKVPSLSTRRL 212

Query: 184 RKLTSSI 190
           + L   I
Sbjct: 213 QVLQYII 219


>gi|302501019|ref|XP_003012502.1| conserved hypothetical protein [Arthroderma benhamiae CBS 112371]
 gi|291176061|gb|EFE31862.1| conserved hypothetical protein [Arthroderma benhamiae CBS 112371]
          Length = 454

 Score = 57.5 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 74/202 (36%), Gaps = 33/202 (16%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL------- 115
           G  +G I E+ GP  SGKT+LA+ T   + K G T  ++D    +      ++       
Sbjct: 107 GIRRGEITELSGPRGSGKTSLAMTTAVNALKQGETVIWIDTAGPICMSRFERMLSRDSTP 166

Query: 116 ---GVDLKNLLISQPDTGEQALEITDMLV---RSGAVDIIVIDSVAALT---PRAEIEGD 166
                 L+NLL  QP T    L +    +         +IV+DS++ L     R+++   
Sbjct: 167 LETQDRLRNLLHFQPTTLAHLLALICHPIADFPPPNTGLIVVDSISCLFGSEFRSKLPAK 226

Query: 167 MGE---------SLPGMQARLMSQALR-------KLTSSISRSKCILVFINQMRMKIGVM 210
           +G          S    +A+      +        L +  SR  C +V +N+M  +    
Sbjct: 227 LGSKAKDLHGTGSRANKEAQESKLWWKLIGSLSSNLNALASRFDCAVVVVNEMVTRFRSG 286

Query: 211 FGSP-ETTTGGNALKFYSSVRL 231
                     G       + R+
Sbjct: 287 QKPMLHVAISGYTWDTSVATRV 308


>gi|212720586|ref|NP_001132052.1| hypothetical protein LOC100193464 [Zea mays]
 gi|194693306|gb|ACF80737.1| unknown [Zea mays]
          Length = 363

 Score = 57.5 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 70/183 (38%), Gaps = 30/183 (16%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTGGTCAFVDAEHAL 107
           GLD ALG GG P G++ E+ GP   GKT   L                G   ++D E   
Sbjct: 89  GLDEALG-GGIPTGKLTEVVGPSGIGKTQFCLKLALLAALPEYYGGLDGRVVYIDTEFKF 147

Query: 108 DSIYARKLGVD---------------LKNLLISQPDT---GEQALEITDMLVRSGAVDII 149
                 ++G                    +L+ +P +     ++LE   + +    V ++
Sbjct: 148 SPRRMIEIGQKSFPQIFRQEGLAQKMAGRILVMRPTSLADFTKSLEEMKVTLLQHDVKLL 207

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           ++DSVAAL        +  ++  G +   +  +L  L S    S+  +V  NQ+R +   
Sbjct: 208 IVDSVAALMSM-----ENEKATAGFRQHPLRWSLSFLKSIAEFSRIPVVVTNQVRSQSND 262

Query: 210 MFG 212
              
Sbjct: 263 DGY 265


>gi|19114539|ref|NP_593627.1| RecA family ATPase Rhp57 [Schizosaccharomyces pombe 972h-]
 gi|20178063|sp|Q9UUL2|RAD57_SCHPO RecName: Full=DNA repair protein rhp57; AltName: Full=RAD57 homolog
 gi|5821322|dbj|BAA83768.1| DNA repair protein Rhp57 [Schizosaccharomyces pombe]
 gi|12038923|emb|CAC19737.1| RecA family ATPase Rhp57 [Schizosaccharomyces pombe]
          Length = 354

 Score = 57.5 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 71/197 (36%), Gaps = 34/197 (17%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGGT---CAFV 101
           +++G + LD  L  GG P G++ EI G   SGK+   +      Q     GG      F+
Sbjct: 75  LTTGDVKLDETL-HGGIPVGQLTEICGESGSGKSQFCMQLCLMVQLPLSLGGMNKAAVFI 133

Query: 102 DAEHALDSIYARKL---------------------GVDLKNLLISQPDTGEQALEITDML 140
             E  L++    +L                     G  +  +L    ++ E  ++    +
Sbjct: 134 STESGLETKRLFELARYLPERYPKADKKDIIIKNPGDRVYTILCPDLESQEHIIQYQLPI 193

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESL------PGMQARLMSQALRKLTSSISRSK 194
           + +     +VI    A   RAE+  +  +S          +   + +    L +   + +
Sbjct: 194 LFNRDKIGLVILDSVASNYRAELRYNRSKSHFRDLDNIAKRGNQLGKLAMTLRTLAHQHE 253

Query: 195 CILVFINQMRMKIGVMF 211
             +V  NQ+  +I   +
Sbjct: 254 AAVVIANQVSDRIPRDY 270


>gi|304437043|ref|ZP_07397006.1| DNA repair protein RadA [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369994|gb|EFM23656.1| DNA repair protein RadA [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 457

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 56/148 (37%), Gaps = 4/148 (2%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +   S+GS  LD  LG GG   G +V + G    GK++L L   A   + G    +V 
Sbjct: 65  EDLPRFSTGSGELDRVLG-GGVIPGAMVLVVGDPGVGKSSLTLRASADIARAGRRVLYVT 123

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E +   I  R     L+ +        E  L+     V +    + +IDS+  +  R +
Sbjct: 124 GEESARQIRMRA--DRLQAVADELLVVSETNLDAICAHVENVKPALFIIDSIQTMY-RPD 180

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSI 190
           IE   G      +  +    + K     
Sbjct: 181 IESAPGSVSQVRECAMELMRVAKTAGIA 208


>gi|119487018|ref|ZP_01620890.1| KaiC [Lyngbya sp. PCC 8106]
 gi|119455947|gb|EAW37081.1| KaiC [Lyngbya sp. PCC 8106]
          Length = 485

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 60/170 (35%), Gaps = 2/170 (1%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           L  +       E +SSG   LD  L  GG  +  I  I GP   GKTTL +  + ++   
Sbjct: 229 LPDEFQQIFSTETISSGIPDLDELL-QGGLERSTITIISGPSGVGKTTLGMQFMKEAAGR 287

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           G        E ++D++  R   V++  +           L I  +L        I+   V
Sbjct: 288 GERSLVCTFEESIDTLTRRCESVNI-PVKAMVERGTLCILSIEPLLYTPDEFANIIRQEV 346

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              + +  +   M       Q   ++  L  L   +       + IN+M 
Sbjct: 347 ENQSAQIVMIDSMAGYRLSFQQENLTNHLHSLCRYLKNMGVATLLINEME 396



 Score = 39.1 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + +S+G  GLD  L  GG    R   + G    GKTT+ LH +      G T  ++    
Sbjct: 4   DRLSTGISGLDEVL-YGGLIPERGYMVRGGPGCGKTTIGLHFLQAGILQGETSLYITLGE 62

Query: 106 ALDSIYARKLGVDLKN 121
           A+  + +    ++  +
Sbjct: 63  AVSQLRSITSALNFDH 78


>gi|169620824|ref|XP_001803823.1| hypothetical protein SNOG_13618 [Phaeosphaeria nodorum SN15]
 gi|111057945|gb|EAT79065.1| hypothetical protein SNOG_13618 [Phaeosphaeria nodorum SN15]
          Length = 411

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 74/235 (31%), Gaps = 46/235 (19%)

Query: 47  VVSSGSLGLDIALG---------IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
            VS+G   LD  L           GG+ +G++ EI+GP  +GKT+  +   A + + G  
Sbjct: 35  TVSTGIAHLDKLLAPPSLPGHDVAGGYMRGKVTEIFGPSGAGKTSFGIQAAANAIRQGQQ 94

Query: 98  CAFVDAEH--------------------------ALDSIYARKLGVDLKNLLISQPDTGE 131
             ++D                             A              +L      T  
Sbjct: 95  VVWIDGACAPLVTRRLLQVFAASQDAPLTDSSTDAPSPQREAARDEVCSHLHHVAAPTLA 154

Query: 132 QALEI---TDMLVRSGAVDIIVIDSVAAL----TPRAEIEGDMGESLP---GMQARLMSQ 181
             L +   +       +  +++IDS++ L     PR     +  E      G +  +++ 
Sbjct: 155 HLLALFMHSPASFPPQSTSLVIIDSLSTLVDNAYPRNVEGKNKNEQTRWAAGRRFTVIND 214

Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA-LKFYSSVRLDIRR 235
            +  L+   +     L+   Q   +I     +           +   S RL + R
Sbjct: 215 IVSTLSRFAALHNVALLLTCQTITRIRGASRALLVPAISGVEWENGVSTRLVLFR 269


>gi|62002245|gb|AAX58724.1| RecA [Lactobacillus plantarum]
          Length = 68

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/67 (62%), Positives = 55/67 (82%)

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LEI D LV SGAVDI+V+DSVAAL PRAEIEG+MG++  G+QARLMSQALR ++ ++++ 
Sbjct: 2   LEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRTVSRTLNKP 61

Query: 194 KCILVFI 200
             I +FI
Sbjct: 62  MTIALFI 68


>gi|260556496|ref|ZP_05828714.1| DNA repair protein RadA [Acinetobacter baumannii ATCC 19606]
 gi|260409755|gb|EEX03055.1| DNA repair protein RadA [Acinetobacter baumannii ATCC 19606]
          Length = 462

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 84/264 (31%), Gaps = 36/264 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            + +G    D  LG GG   G +V I G    GK+T+ L T         +  ++  E +
Sbjct: 73  RLPTGISEFDRVLG-GGLVTGSVVLIGGDPGIGKSTILLQTATHMASAKSSALYITGEES 131

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           L  +  R   +DL           E  +E    ++      + ++DS+  L         
Sbjct: 132 LSQVALRAQRLDLPT--DQLKVMAETCVERICEVLEQERPVVAILDSIQTLYTETLQSAP 189

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
            G S     A L       LT     S    +FI     K G +        G   L+  
Sbjct: 190 GGVSQIRESAAL-------LTRYAKNSGT-ALFIVGHVTKEGAL-------AGPRVLEHM 234

Query: 227 SSVRLDI--------RRVGSIKDKDSITGNQTRVKVVKNKMASP--FKQVEFDIMYGEG- 275
               L          R + ++K++     N+  V  + +K           F   Y E  
Sbjct: 235 VDCVLYFEGQSDSRYRMIRAVKNRFGAV-NELGVFGMTDKGLREVANPSAIFLSRYDEAI 293

Query: 276 ------ISFFGELIDLGVKASIVD 293
                 IS  G    L    ++VD
Sbjct: 294 PGSIVMISREGTRPLLVEVQALVD 317


>gi|260549299|ref|ZP_05823519.1| DNA repair protein RadA [Acinetobacter sp. RUH2624]
 gi|260407705|gb|EEX01178.1| DNA repair protein RadA [Acinetobacter sp. RUH2624]
          Length = 462

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 84/264 (31%), Gaps = 36/264 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            + +G    D  LG GG   G +V I G    GK+T+ L T         +  ++  E +
Sbjct: 73  RLPTGISEFDRVLG-GGLVTGSVVLIGGDPGIGKSTILLQTATHMASAKSSALYITGEES 131

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           L  +  R   +DL           E  +E    ++      + ++DS+  L         
Sbjct: 132 LSQVALRAQRLDLPT--DQLKVMAETCVERICEVLEQERPVVAILDSIQTLYTETLQSAP 189

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
            G S     A L       LT     S    +FI     K G +        G   L+  
Sbjct: 190 GGVSQIRESAAL-------LTRYAKNSGT-ALFIVGHVTKEGAL-------AGPRVLEHM 234

Query: 227 SSVRLDI--------RRVGSIKDKDSITGNQTRVKVVKNKMASP--FKQVEFDIMYGEG- 275
               L          R + ++K++     N+  V  + +K           F   Y E  
Sbjct: 235 VDCVLYFEGQSDSRYRMIRAVKNRFGAV-NELGVFGMTDKGLREVANPSAIFLSRYDEAI 293

Query: 276 ------ISFFGELIDLGVKASIVD 293
                 IS  G    L    ++VD
Sbjct: 294 PGSIVMISREGTRPLLVEVQALVD 317


>gi|169632672|ref|YP_001706408.1| DNA repair protein RadA [Acinetobacter baumannii SDF]
 gi|169795017|ref|YP_001712810.1| DNA repair protein RadA [Acinetobacter baumannii AYE]
 gi|184159198|ref|YP_001847537.1| DNA repair protein RadA [Acinetobacter baumannii ACICU]
 gi|213158320|ref|YP_002320371.1| DNA repair protein RadA [Acinetobacter baumannii AB0057]
 gi|215482564|ref|YP_002324756.1| DNA repair protein RadA [Acinetobacter baumannii AB307-0294]
 gi|239500985|ref|ZP_04660295.1| DNA repair protein RadA [Acinetobacter baumannii AB900]
 gi|294837798|ref|ZP_06782481.1| DNA repair protein RadA [Acinetobacter sp. 6013113]
 gi|294840731|ref|ZP_06785414.1| DNA repair protein RadA [Acinetobacter sp. 6014059]
 gi|294858579|ref|ZP_06796348.1| DNA repair protein RadA [Acinetobacter sp. 6013150]
 gi|301345394|ref|ZP_07226135.1| DNA repair protein RadA [Acinetobacter baumannii AB056]
 gi|301511592|ref|ZP_07236829.1| DNA repair protein RadA [Acinetobacter baumannii AB058]
 gi|301594788|ref|ZP_07239796.1| DNA repair protein RadA [Acinetobacter baumannii AB059]
 gi|169147944|emb|CAM85807.1| DNA repair protein [Acinetobacter baumannii AYE]
 gi|169151464|emb|CAP00213.1| DNA repair protein [Acinetobacter baumannii]
 gi|183210792|gb|ACC58190.1| predicted ATP-dependent serine protease [Acinetobacter baumannii
           ACICU]
 gi|193078110|gb|ABO13051.2| DNA repair protein [Acinetobacter baumannii ATCC 17978]
 gi|213057480|gb|ACJ42382.1| DNA repair protein RadA [Acinetobacter baumannii AB0057]
 gi|213988856|gb|ACJ59155.1| DNA repair protein RadA [Acinetobacter baumannii AB307-0294]
 gi|322509113|gb|ADX04567.1| DNA repair protein radA [Acinetobacter baumannii 1656-2]
 gi|323519142|gb|ADX93523.1| DNA repair protein RadA [Acinetobacter baumannii TCDC-AB0715]
          Length = 462

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 84/264 (31%), Gaps = 36/264 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            + +G    D  LG GG   G +V I G    GK+T+ L T         +  ++  E +
Sbjct: 73  RLPTGISEFDRVLG-GGLVTGSVVLIGGDPGIGKSTILLQTATHMASAKSSALYITGEES 131

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           L  +  R   +DL           E  +E    ++      + ++DS+  L         
Sbjct: 132 LSQVALRAQRLDLPT--DQLKVMAETCVERICEVLEQERPVVAILDSIQTLYTETLQSAP 189

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
            G S     A L       LT     S    +FI     K G +        G   L+  
Sbjct: 190 GGVSQIRESAAL-------LTRYAKNSGT-ALFIVGHVTKEGAL-------AGPRVLEHM 234

Query: 227 SSVRLDI--------RRVGSIKDKDSITGNQTRVKVVKNKMASP--FKQVEFDIMYGEG- 275
               L          R + ++K++     N+  V  + +K           F   Y E  
Sbjct: 235 VDCVLYFEGQSDSRYRMIRAVKNRFGAV-NELGVFGMTDKGLREVANPSAIFLSRYDEAI 293

Query: 276 ------ISFFGELIDLGVKASIVD 293
                 IS  G    L    ++VD
Sbjct: 294 PGSIVMISREGTRPLLVEVQALVD 317


>gi|126642669|ref|YP_001085653.1| DNA repair protein RadA [Acinetobacter baumannii ATCC 17978]
          Length = 482

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 84/264 (31%), Gaps = 36/264 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            + +G    D  LG GG   G +V I G    GK+T+ L T         +  ++  E +
Sbjct: 93  RLPTGISEFDRVLG-GGLVTGSVVLIGGDPGIGKSTILLQTATHMASAKSSALYITGEES 151

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           L  +  R   +DL           E  +E    ++      + ++DS+  L         
Sbjct: 152 LSQVALRAQRLDLPT--DQLKVMAETCVERICEVLEQERPVVAILDSIQTLYTETLQSAP 209

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
            G S     A L       LT     S    +FI     K G +        G   L+  
Sbjct: 210 GGVSQIRESAAL-------LTRYAKNSGT-ALFIVGHVTKEGAL-------AGPRVLEHM 254

Query: 227 SSVRLDI--------RRVGSIKDKDSITGNQTRVKVVKNKMASP--FKQVEFDIMYGEG- 275
               L          R + ++K++     N+  V  + +K           F   Y E  
Sbjct: 255 VDCVLYFEGQSDSRYRMIRAVKNRFGAV-NELGVFGMTDKGLREVANPSAIFLSRYDEAI 313

Query: 276 ------ISFFGELIDLGVKASIVD 293
                 IS  G    L    ++VD
Sbjct: 314 PGSIVMISREGTRPLLVEVQALVD 337


>gi|325123133|gb|ADY82656.1| DNA repair protein [Acinetobacter calcoaceticus PHEA-2]
          Length = 462

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 84/264 (31%), Gaps = 36/264 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            + +G    D  LG GG   G +V I G    GK+T+ L T         +  ++  E +
Sbjct: 73  RLPTGISEFDRVLG-GGLVTGSVVLIGGDPGIGKSTILLQTATHMASAKSSALYITGEES 131

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           L  +  R   +DL           E  +E    ++      + ++DS+  L         
Sbjct: 132 LSQVALRAQRLDLPT--DQLKVMAETCVERICEVLEQEKPVVAILDSIQTLYTETLQSAP 189

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
            G S     A L       LT     S    +FI     K G +        G   L+  
Sbjct: 190 GGVSQIRESAAL-------LTRYAKNSGT-ALFIVGHVTKEGAL-------AGPRVLEHM 234

Query: 227 SSVRLDI--------RRVGSIKDKDSITGNQTRVKVVKNKMASP--FKQVEFDIMYGEG- 275
               L          R + ++K++     N+  V  + +K           F   Y E  
Sbjct: 235 VDCVLYFEGQSDSRYRMIRAVKNRFGAV-NELGVFGMTDKGLREVANPSAIFLSRYDEAI 293

Query: 276 ------ISFFGELIDLGVKASIVD 293
                 IS  G    L    ++VD
Sbjct: 294 PGSIVMISREGTRPLLVEVQALVD 317


>gi|293609900|ref|ZP_06692202.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828352|gb|EFF86715.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 462

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 84/264 (31%), Gaps = 36/264 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            + +G    D  LG GG   G +V I G    GK+T+ L T         +  ++  E +
Sbjct: 73  RLPTGISEFDRVLG-GGLVTGSVVLIGGDPGIGKSTILLQTATHMASAKSSALYITGEES 131

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           L  +  R   +DL           E  +E    ++      + ++DS+  L         
Sbjct: 132 LSQVALRAQRLDLPT--DQLKVMAETCVERICEVLEQEKPVVAILDSIQTLYTETLQSAP 189

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
            G S     A L       LT     S    +FI     K G +        G   L+  
Sbjct: 190 GGVSQIRESAAL-------LTRYAKNSGT-ALFIVGHVTKEGAL-------AGPRVLEHM 234

Query: 227 SSVRLDI--------RRVGSIKDKDSITGNQTRVKVVKNKMASP--FKQVEFDIMYGEG- 275
               L          R + ++K++     N+  V  + +K           F   Y E  
Sbjct: 235 VDCVLYFEGQSDSRYRMIRAVKNRFGAV-NELGVFGMTDKGLREVANPSAIFLSRYDEAI 293

Query: 276 ------ISFFGELIDLGVKASIVD 293
                 IS  G    L    ++VD
Sbjct: 294 PGSIVMISREGTRPLLVEVQALVD 317


>gi|33152243|ref|NP_873596.1| DNA repair protein RadA [Haemophilus ducreyi 35000HP]
 gi|33148465|gb|AAP95985.1| DNA repair protein RadA [Haemophilus ducreyi 35000HP]
          Length = 459

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 10/165 (6%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G I +L       + +   SSG   LD  LG GG   G  + I G   +GK+TL L  + 
Sbjct: 60  GKIQRLADIS--LQEVPRFSSGFNELDRVLG-GGIVPGSAILIGGHPGAGKSTLLLQVMC 116

Query: 90  QSQKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
              K   +  +V  E +L  +  R  +LG+  ++L +    + E    I           
Sbjct: 117 GLSKQ-HSALYVTGEESLQQVAMRANRLGLPTEHLKMLSETSVEHICNIA----DQEKPK 171

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           I+VIDS+  +            S     A  +++  +    +I  
Sbjct: 172 IMVIDSIQVMHLADIQSSPGSVSQVRECASFLTRYAKMQQVAIIM 216


>gi|307171500|gb|EFN63341.1| DNA-repair protein XRCC3 [Camponotus floridanus]
          Length = 253

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 70/199 (35%), Gaps = 26/199 (13%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCA 99
           + +++G   LDI L  GG P   I +IYG   +GKT LAL      Q        G    
Sbjct: 15  KFLTTGCSKLDIIL-KGGIPCRGITQIYGAAGTGKTQLALQLCLSVQLPVTAGGLGAGAI 73

Query: 100 FVDAEHALDSIYARKL----------GVDLKNLLISQPDTGEQ---ALEITDMLVRSGAV 146
           ++  E A  S   ++L           V+   + ++   T ++    L+     + +   
Sbjct: 74  YISTETAFPSERLQQLLQSSEIAKAHSVNGDVIFVNHIATIDELELCLQRKVPALMNIHK 133

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
             +++    A   R E      +    +Q +      R+L      +   ++ INQ+   
Sbjct: 134 IGLLVIDSIAAPYRVE------DWKDQLQGKSKRNVGRQLHELCKNNNLCVICINQVSAV 187

Query: 207 IGVMFGSPETTTGGNALKF 225
           I       E       L F
Sbjct: 188 IDSHSVISEDAIEQPVLGF 206


>gi|121711619|ref|XP_001273425.1| hypothetical protein ACLA_007580 [Aspergillus clavatus NRRL 1]
 gi|119401576|gb|EAW11999.1| hypothetical protein ACLA_007580 [Aspergillus clavatus NRRL 1]
          Length = 388

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 85/245 (34%), Gaps = 48/245 (19%)

Query: 47  VVSSGSLGLDIALG---------------IGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
            +S+G   LD A+                  G   G + E++GP   GKT+LAL   + +
Sbjct: 37  SISTGLPRLDEAISPVSLDESPEASGEDVTRGILCGHVTEVFGPPGVGKTSLALTLTSNA 96

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVD--------------LKNLLISQPDT---GEQAL 134
            + GG   ++D    L  +  + +                 + NL+  +  +       L
Sbjct: 97  LREGGKVVWIDTTSPLPKLRLKSMLSKSLEASESSESSEHLVDNLIYFRAQSLPHLLALL 156

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPR-----AEIEGDMGESLPGMQAR----------LM 179
                        ++V+DSV+   P      +E++  + ++    +A+          + 
Sbjct: 157 LRPPKGFPPEDTKLLVVDSVSGPFPSYFMGPSELKSRLAQAKVTDKAQVQWLMNRKWNVT 216

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT-TGGNALKFYSSVRLDIRRVGS 238
           S+   +L    +     ++ +NQ   KI     +  T    G   +     R+ + R  +
Sbjct: 217 SELANQLMKLAAAQSLAVLVVNQTHTKIKGQPRATLTPLLAGGPWENSVYTRIALYRAFA 276

Query: 239 IKDKD 243
           + D  
Sbjct: 277 VDDDS 281


>gi|254577177|ref|XP_002494575.1| ZYRO0A04708p [Zygosaccharomyces rouxii]
 gi|238937464|emb|CAR25642.1| ZYRO0A04708p [Zygosaccharomyces rouxii]
          Length = 463

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 81/234 (34%), Gaps = 33/234 (14%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVS---------SGSLGLDIALGIGGF 64
           + L+ + +++ + + K  I +   Q   F  ++ +S         +  +G+D ALG GG 
Sbjct: 45  RQLQRSTNEVDK-FQKSMIAEYDDQLMNFNEVKPISEVEGPVPFTTTDVGIDEALG-GGI 102

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGGT---CAFVDAEHALDSIYARKL--- 115
               I E++G  S+GK+ L +      Q     GG    C ++  E  L +     +   
Sbjct: 103 YTHGITEVFGESSTGKSQLLMQLCLSVQLPTNMGGIKGKCVYISTEGDLPTQRLASMISA 162

Query: 116 ----------GVDLKNLLISQPDTGEQAL--EITDMLVRSGAVDIIVIDSVAALTPRAEI 163
                       ++  +        +  L  ++  +L  S     ++I    +   R E+
Sbjct: 163 REELVKHGVSQENVYTVTCCDLINQDHILNVQLPILLENSRGAIKLIIIDSISHHMRVEL 222

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
                +         + Q   +L    ++    +V  NQ+  +       P   
Sbjct: 223 PTRDFKDH-QDNRFYVDQVAERLLDLANKHALAVVVANQVSDRPLFESPEPYVA 275


>gi|222056650|ref|YP_002539012.1| circadian clock protein, KaiC [Geobacter sp. FRC-32]
 gi|221565939|gb|ACM21911.1| putative circadian clock protein, KaiC [Geobacter sp. FRC-32]
          Length = 579

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 72/173 (41%), Gaps = 16/173 (9%)

Query: 31  AIMQLGSQG-SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           ++M + S G       E VS+G   LD  LG  G+ +G  + + G   +GK+++A H + 
Sbjct: 233 SVMPITSLGLDHRASTERVSTGIPRLDTMLGGKGYYRGSSILVTGTAGTGKSSMAAHFVN 292

Query: 90  QSQKTGGTCAFVDAEHALDSIY--ARKLGVDLKNLLI----------SQPDTGEQALEIT 137
            + + G  C +   E +   I    R +G+DL+  +                 E  L   
Sbjct: 293 AACRRGERCLYFAFEESQSQILRNMRSIGLDLEQWVEKGLLRFHTTRPTIYGLEMHLVTM 352

Query: 138 DMLVRSGAVDIIVIDSVAALTPRA---EIEGDMGESLPGMQARLMSQALRKLT 187
              V   +  I+VID ++ L   A   E++  +   +  ++ + ++     LT
Sbjct: 353 HKAVEGFSPAIVVIDPISNLVTTATESEVKSMLCRLVDYLKLKQITAFCTDLT 405



 Score = 42.5 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 78/254 (30%), Gaps = 33/254 (12%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS---QKTGGTCAFVDAEH 105
            +G  GLD   G GG P+GR   + G    GKT  A+  + +        G     + + 
Sbjct: 12  PTGIRGLDEITG-GGLPQGRPTLVCGGTGCGKTLFAMEFLLRGALHHDEPGVFMSFEEKP 70

Query: 106 ALDSIYARKLGVDLKNLLISQ----PDTGEQALEI--------------TDMLVRSGAVD 147
                    LG +LK+LL            +  EI                  + S    
Sbjct: 71  DELVQNYASLGFNLKDLLARHLLALDYVHIERSEIEETGEYDLEGLFIRLGHAIDSVGAK 130

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
            +V+D+V AL       G   ES+   + R + + L+      ++    +V   Q    +
Sbjct: 131 RVVLDTVEALFS-----GFSSESILRAELRRLFRFLK------AKGVTAIVTGEQGERTL 179

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
                          L      ++  RR+  IK + S  G      ++  +  S      
Sbjct: 180 TRYGLEEYVADCVIFLNHTVVEQVATRRLRIIKYRGSSHGTNEYPFLIDEQGFSVMPITS 239

Query: 268 FDIMYGEGISFFGE 281
             + +         
Sbjct: 240 LGLDHRASTERVST 253


>gi|310795475|gb|EFQ30936.1| hypothetical protein GLRG_06080 [Glomerella graminicola M1.001]
          Length = 427

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 81/254 (31%), Gaps = 40/254 (15%)

Query: 48  VSSGSLGLDIALGI-----------GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
           +S+G   LD  L             GG  +G++ EI+GP  SGKT L +  +A +   G 
Sbjct: 43  ISTGIDRLDETLVSSFSRRDSVSVRGGLQRGQVSEIWGPPGSGKTALGIQLVASALCDGH 102

Query: 97  TCAFVD----------------AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
              +VD                 E A              NL      +    + +    
Sbjct: 103 GAVWVDCAYSVCGQRLNAVIEAVEQARSPTDDGPAKPSSDNLAHYSCPSLPHLVALLCRP 162

Query: 141 VR---SGAVDIIVIDSVAALT---------PRAEIEGDMGESLPGMQARLMSQALRKLTS 188
                     +++IDS++AL           R       G  L   + + +      L  
Sbjct: 163 TAATLPAKTALVIIDSLSALVNYAFPKASDGRKGPPQGKGPGLSAKRLQALQYITSALQK 222

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTT-GGNALKFYSSVRLDIRRVGSIKDKDSITG 247
             +   C +V ++Q   ++ +   +    +      +   S R+ + R    KD    T 
Sbjct: 223 LAATRDCAVVVLSQCATRMQLERSATLIPSINAGIWEQGMSTRVVLFRDWVWKDGRPSTV 282

Query: 248 NQTRVKVVKNKMAS 261
           +   V+ +  K   
Sbjct: 283 SFAGVQKLNGKAGP 296


>gi|119872827|ref|YP_930834.1| putative circadian clock protein, KaiC [Pyrobaculum islandicum DSM
           4184]
 gi|119674235|gb|ABL88491.1| putative circadian clock protein, KaiC [Pyrobaculum islandicum DSM
           4184]
          Length = 271

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 58/154 (37%), Gaps = 8/154 (5%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           ++  ++ +S+G   LD AL  GG P+G  V + G    GK+ L +H      K+G    +
Sbjct: 1   MYSHVKRISTGVETLDRAL-EGGIPQGSWVVVTGEPGVGKSILCIHFAYAGLKSGDPVVY 59

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E     +  +   + +         +      I          +I+V+D    L   
Sbjct: 60  VTTEQEFRDVMEQAKQLGMD-------FSQFSVYNIAWKKEPEELPEIVVVDIFGLLKVA 112

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
            ++     E  P    R  + ++  L  +I+ + 
Sbjct: 113 RQLTEKSKEESPDKVRRYAALSIDTLIEAINEAY 146


>gi|302663930|ref|XP_003023602.1| conserved hypothetical protein [Trichophyton verrucosum HKI 0517]
 gi|291187606|gb|EFE42984.1| conserved hypothetical protein [Trichophyton verrucosum HKI 0517]
          Length = 486

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 72/202 (35%), Gaps = 33/202 (16%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL------- 115
           G  +G I E+ GP  SGKT+LA+ T   + K G T  ++D    +      K+       
Sbjct: 106 GIRRGEITELSGPRGSGKTSLAMTTAVNALKQGETVIWIDTAGPICMSRFEKMLSRDSTP 165

Query: 116 ---GVDLKNLLISQPDTGEQALEITDMLV---RSGAVDIIVIDSVAALT---PRAEIEGD 166
                 L+NLL  QP T    L +    +         +IV+DS++ L     R+++   
Sbjct: 166 LETQDRLRNLLHFQPTTLAHLLALICHPIADFPPPNTGLIVVDSISCLFGSEFRSKLPAK 225

Query: 167 MGESLPGMQA--------RLMSQALRKLTS--------SISRSKCILVFINQMRMKIGVM 210
           +G     +             S+   KL            SR  C ++ +N+M  +    
Sbjct: 226 LGSKAKDLPGAGPRANKEAQESKLWWKLIGSLSSNLNALASRFGCAVIVVNEMVTRFRSG 285

Query: 211 FGSP-ETTTGGNALKFYSSVRL 231
                     G       + R+
Sbjct: 286 QKPMLHVAISGYTWDTSVATRV 307


>gi|294011036|ref|YP_003544496.1| DNA repair protein RadA/Sms [Sphingobium japonicum UT26S]
 gi|292674366|dbj|BAI95884.1| DNA repair protein RadA/Sms [Sphingobium japonicum UT26S]
          Length = 455

 Score = 57.2 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 74/217 (34%), Gaps = 7/217 (3%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           A+M +G    +       ++G    D ALG GG   G    I G    GK+TL L   A+
Sbjct: 54  ALMLVGLDDKVDLP-PRTTTGIAEFDRALG-GGIVSGSATLIGGDPGIGKSTLLLQAAAR 111

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
               G + A++  E A D +  R   + L N  +    +     +I   L       +++
Sbjct: 112 IASAGHSVAYISGEEASDQVRLRAQRLGLGNAPVQLA-SATSVRDILTTLGEGAPPALLI 170

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDS+  +            S     ++ + +  ++  +++     +    +    ++   
Sbjct: 171 IDSIQTMHSDLIEGAPGTVSQVRASSQELIRFAKQRGTALILVGHVTKDGSIAGPRVLEH 230

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
                 +  G     Y  +R    R G         G
Sbjct: 231 MVDTVLSFEGERSHQYRILRAIKNRFG----GTDEIG 263


>gi|27262420|gb|AAN87491.1| DNA repair protein RadA [Heliobacillus mobilis]
          Length = 460

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 58/154 (37%), Gaps = 4/154 (2%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
            +  + E I  +S+G   LD  LG GG   G +  + G    GK+TL L    +    GG
Sbjct: 65  DKAEVTENI-RLSTGISELDRVLG-GGLVAGSLTLLAGDPGIGKSTLLLQAAQKIADNGG 122

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
              +V  E ++  I  R   + ++ + +      E  ++     +R      ++IDS+  
Sbjct: 123 RVLYVSGEESVQQIKLRAARLGVQGVELY--LLAETNIQTICDSIRECKPVWVIIDSIQT 180

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           +            +        + +  + L  ++
Sbjct: 181 MYWDEIGSAPGNVAQVRECTGQLLRLAKDLPVAM 214


>gi|297746144|emb|CBI16200.3| unnamed protein product [Vitis vinifera]
          Length = 1093

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 4/142 (2%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L       +  +V+S+G  G+D+ L  GG   G + E+ GP S+GKT + L   +   
Sbjct: 128 MELLEDAQ--QNKQVLSTGCEGIDMLL-HGGLCVGHLTELVGPSSAGKTQICLKVASGVA 184

Query: 93  KTG-GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
               G   F+D  ++   +        + + +  +         ++ +L  S      ++
Sbjct: 185 TRYMGGVVFIDTGNSFSPLRIAHFINQIPDTIFKEVKQNILEKVMSQILCHSVFDIFAML 244

Query: 152 DSVAALTPRAEIEGDMGESLPG 173
           D V  L      +   G     
Sbjct: 245 DVVHQLEYSLRSQVQTGADQVR 266


>gi|47213607|emb|CAG07273.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 329

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 45/217 (20%), Positives = 74/217 (34%), Gaps = 31/217 (14%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAF 100
            + + S  LD ALG GG P GR+ E+ G    GKT L L      Q        G    +
Sbjct: 82  TIVTFSSQLDAALG-GGAPVGRMTEVCGVPGVGKTQLCLQLAVDVQVPHCFGGLGAQVVY 140

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           VD E          L     N      +  EQ + +    V +   ++ V+     L   
Sbjct: 141 VDTEGGFRLQRLLDLAAAAVNHCSLLAEDQEQRVAMETFTVETILSNVFVVRCHDYLELL 200

Query: 161 AEIEGDMG-------------ES----------LPGMQARLMSQALRKLTSSISRSKCIL 197
           AE+    G             +S              + RL+S   ++L +  +     +
Sbjct: 201 AELHLMPGFLSAHPGVRLLVVDSVASPFRPLLDELSQRTRLLSGLAQQLVAMAASRDMAV 260

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
           V  NQM  ++           G +     +++RL ++
Sbjct: 261 VVTNQMTTRVWGTHSEVVPALG-DTWGHAAAIRLRLQ 296


>gi|14590190|ref|NP_142255.1| DNA repair and recombination protein RadA [Pyrococcus horikoshii
           OT3]
 gi|13878667|sp|O58001|RADA_PYRHO RecName: Full=DNA repair and recombination protein radA; Contains:
           RecName: Full=Pho radA intein
 gi|3256652|dbj|BAA29335.1| 529aa long hypothetical DNA repair protein [Pyrococcus horikoshii
           OT3]
          Length = 529

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 83/204 (40%), Gaps = 28/204 (13%)

Query: 82  TLALHTIAQSQKTG--GTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGE 131
           TLA+      ++ G  G+  ++D E+       R++  +        LK++ +++     
Sbjct: 330 TLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSN 389

Query: 132 QAL--------EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
             +        +I ++L     V ++++DS+ +   R+E    +G      + + +++ L
Sbjct: 390 HQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHF-RSEY---IGRGALAERQQKLAKHL 445

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK--- 240
             L    +  +  +   NQ++ +    FG P    GG+ L   +++R+ +R+    K   
Sbjct: 446 ADLHRLANLYEIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVA 505

Query: 241 ---DKDSITGNQTRVKVVKNKMAS 261
              D   +   +   ++ +  +  
Sbjct: 506 RLIDAPHLPEGEAVFRITEKGIED 529



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 18  AALSQIQ---RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           AAL  IQ   +    G  M+        E I  +S+GS  LD  LG GG     I E++G
Sbjct: 88  AALKIIQAARKAANLGTFMRADEYLKKRESIGRISTGSKSLDKLLG-GGIETQAITEVFG 146

Query: 75  PESSGK 80
              SGK
Sbjct: 147 EFGSGK 152


>gi|167766275|ref|ZP_02438328.1| hypothetical protein CLOSS21_00779 [Clostridium sp. SS2/1]
 gi|317496966|ref|ZP_07955296.1| DNA repair protein RadA [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167711994|gb|EDS22573.1| hypothetical protein CLOSS21_00779 [Clostridium sp. SS2/1]
 gi|291559092|emb|CBL37892.1| DNA repair protein RadA [butyrate-producing bacterium SSC/2]
 gi|316895978|gb|EFV18130.1| DNA repair protein RadA [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 451

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 61/205 (29%), Gaps = 18/205 (8%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           K +   +       E  E + +G   LD  LG GG  KG +  + G    GK+TL L   
Sbjct: 50  KTSASPMNISEVTVENEERIPTGIHELDRVLG-GGIVKGSLSLVGGDPGIGKSTLLLQVC 108

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
                +     ++  E ++  I  R     +           E  L+     +     + 
Sbjct: 109 RNLANSKRKVLYISGEESMHQIKMRA--ERIGTFEEEMLLYCETDLDAITNAILKTKPEF 166

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
            VIDS+  +            S        M +        +++   I VFI     K G
Sbjct: 167 AVIDSIQTMYSEDLSSAAGSVSQVREVTAAMMR--------VAKENNIAVFIVGHVTKEG 218

Query: 209 VMFGSPETTTGGNALKFYSSVRLDI 233
                     G   L+      L  
Sbjct: 219 -------VVAGPRTLEHMVDTVLYF 236


>gi|15888420|ref|NP_354101.1| DNA repair protein RadA [Agrobacterium tumefaciens str. C58]
 gi|15156108|gb|AAK86886.1| DNA repair protein [Agrobacterium tumefaciens str. C58]
          Length = 468

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 78/212 (36%), Gaps = 6/212 (2%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG  + L S     E    + +G   LD A G GGF +G  V I G    GK+TL +   
Sbjct: 52  KGRPVTLTSLSGEIEEAPRIPTGISELDRATG-GGFVRGSAVLIGGDPGIGKSTLLMQAA 110

Query: 89  AQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           A   + G    +V  E A+  +   A++LG    ++L++     E   +I   +      
Sbjct: 111 AALSRRGHRVIYVSGEEAVAQVRLRAQRLGSADTDVLLAAETNVE---DILATVSEGKRP 167

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+I+IDS+  L            +      + M +  ++  +++     +         +
Sbjct: 168 DLIIIDSIQTLWSDTADSAPGTVTQVRTGVQAMIRFAKQTGATMVLVGHVTKEGQIAGPR 227

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           +            G+    Y  +R    R G 
Sbjct: 228 VVEHMVDAVLYFEGDRGHHYRILRTVKNRFGP 259


>gi|291546939|emb|CBL20047.1| DNA repair protein RadA [Ruminococcus sp. SR1/5]
          Length = 436

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 64/196 (32%), Gaps = 3/196 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E  S G   LD  LG GG   G +V + G    GK+TL L         G +  ++  E 
Sbjct: 49  ERQSCGIGELDRVLG-GGIVPGSLVLVGGDPGIGKSTLLLQVCRNLSSQGISVLYISGEE 107

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +L  I  R     L           E  LE    ++     D+ V+DS+  +        
Sbjct: 108 SLRQIKLRA--DRLGTFNDKLKLLCETNLENIREIIERTKPDVAVVDSIQTMFHEDISSA 165

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
               S       ++ Q  + +  SI     +    N    ++            G+    
Sbjct: 166 PGSVSQVRESTNVLMQIAKGMGVSIFIVGHVTKEGNVAGPRVLEHMVDTVLYFEGDRHAS 225

Query: 226 YSSVRLDIRRVGSIKD 241
           Y  +R    R GS  +
Sbjct: 226 YRILRAVKNRFGSTNE 241


>gi|169616876|ref|XP_001801853.1| hypothetical protein SNOG_11614 [Phaeosphaeria nodorum SN15]
 gi|160703279|gb|EAT81322.2| hypothetical protein SNOG_11614 [Phaeosphaeria nodorum SN15]
          Length = 353

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 76/230 (33%), Gaps = 36/230 (15%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGI---GGFPKGRIVEI---YGPESSGKTTL--------A 84
           G   + +  +S+GS  LD  LG           ++     + P+   +  L        A
Sbjct: 97  GQQRKRVLKISTGSKQLDTILGGWVHASLRLKIMIAYTLKWLPDYEHQRGLRRVPLWKDA 156

Query: 85  LHTIAQSQKTG---GTCAFVDAEHALDSIYARKLGVDL--------KNLLISQPDTGEQA 133
                  +  G   G  A++D E         ++             N+  ++    E  
Sbjct: 157 DVPYYLPKDMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPETTQDNITYARAVNSEHQ 216

Query: 134 LEITDM---LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           +E+ +            +++IDS+ AL          G      + + ++Q L KLT   
Sbjct: 217 MELLNKVAEFFVGNEYRLLIIDSIMALFR----VDYTGRGELNERQQKLNQFLSKLTHVA 272

Query: 191 SRSKCILVFINQMRMKIGVM----FGSPETTTGGNALKFYSSVRLDIRRV 236
                 ++  NQ++   G              GG+ L   S+ R+ +R+ 
Sbjct: 273 EEFNVAVLLTNQVQSDPGASALFAGADGRKPVGGHILAHASATRILLRKG 322


>gi|297735394|emb|CBI17834.3| unnamed protein product [Vitis vinifera]
          Length = 260

 Score = 56.8 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 55/262 (20%), Positives = 82/262 (31%), Gaps = 56/262 (21%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGGTCAFVDAEHAL 107
           G   LD  L  GG P   I E+     SGKT L L  +  +Q     GG  A     H+ 
Sbjct: 21  GCPILDRCLA-GGVPCNSITELVAESGSGKTQLCLQLVLSAQLPTSLGGLAASSLYIHSE 79

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
               +R+L    ++   S      + + I               DS+AAL  R E E   
Sbjct: 80  FPFPSRRLQQLSQSFRSSYSHLPVRLIVI---------------DSIAALF-RGEFENTP 123

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG------- 220
            +     ++ L  +   KL +   R    +V  NQ+   +G   G      G        
Sbjct: 124 FD--LKRRSSLFFKISGKLKALAERFGLAVVVTNQVVDFVGQAGGLNGLRVGNLGSLWSS 181

Query: 221 ---------NALKFYSSVRLDIRRVGSIKDKDSITGN-----------QTRVKVVKNKMA 260
                     +     + RL + R   I  + +  G            +  + V+     
Sbjct: 182 GRRVCAALGLSWANCVNSRLFLSRNEEIVGEVTGLGGVGAGDTVSRLTRRHLHVIFAPHL 241

Query: 261 SPFKQVEFDIMYGEGISFFGEL 282
            P    EF       IS  G L
Sbjct: 242 -PESSCEFV------ISREGVL 256


>gi|224367517|ref|YP_002601680.1| DNA repair protein RadA [Desulfobacterium autotrophicum HRM2]
 gi|223690233|gb|ACN13516.1| RadA [Desulfobacterium autotrophicum HRM2]
          Length = 453

 Score = 56.8 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 55/148 (37%), Gaps = 4/148 (2%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           FE    + +G    D  LG GG   G +V I G    GK+TL L  +A     G    +V
Sbjct: 64  FEEEPRIQTGIGEFDRVLG-GGIVPGTLVLIGGDPGIGKSTLMLQVLAMLSNAGKKTLYV 122

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
             E ++  +  R   +  + + +      +  L+    +        +V+DS+  +    
Sbjct: 123 SGEESIRQLKMRGKRLASETISMLVAAETD--LDDILAMAEHEMPAAMVVDSIQTVYS-P 179

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSS 189
           EI    G      +A +    + K T  
Sbjct: 180 EIASTPGSVTQIREASMRLMTMAKKTGI 207


>gi|229826449|ref|ZP_04452518.1| hypothetical protein GCWU000182_01822 [Abiotrophia defectiva ATCC
           49176]
 gi|229789319|gb|EEP25433.1| hypothetical protein GCWU000182_01822 [Abiotrophia defectiva ATCC
           49176]
          Length = 448

 Score = 56.8 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 79/222 (35%), Gaps = 15/222 (6%)

Query: 30  GAIMQLGSQGSIFEGI--------EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           G+ ++ G   S+   I        E V++G   LD  LG GG  KG +V + G    GK+
Sbjct: 43  GSSLKQGVAASLPIKIKDVSLETDERVTTGISELDRVLG-GGIVKGSLVLVGGDPGIGKS 101

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDM 139
           TL L   A+      +  +V  E +   I   + +LG    ++L+         +E  + 
Sbjct: 102 TLLLQMCAKLADKNISVLYVSGEESERQIALRSERLGGKFSDMLLFCETD----IEKIEA 157

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
            + S   +++++DS+  +            S        + +  + L  SI     +   
Sbjct: 158 AIESEKPEVVIVDSIQTMYSSKADSAAGSISQVREVTSTLLRISKGLGVSIFIVGHVTKE 217

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
                 +             G  +  Y  +R    R GS  +
Sbjct: 218 GTVAGPRTLEHMVDTVLYFEGEDVASYRILRAAKNRFGSTNE 259


>gi|326426794|gb|EGD72364.1| hypothetical protein PTSG_00384 [Salpingoeca sp. ATCC 50818]
          Length = 364

 Score = 56.8 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 86/247 (34%), Gaps = 50/247 (20%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGG 96
           E +  +S+ +   D  LG GG    ++ E  G   +GKT LA+      Q         G
Sbjct: 77  EQLHSLSTLTRDFDELLG-GGIEPRKLTEFCGAPGAGKTQLAMQLSVNCQLPHAFGGLAG 135

Query: 97  TCAFVDAEHALDSIYARKLGVD-------------------------LKNLLISQPDTGE 131
              ++D E +  +   +++                            L+ + + +     
Sbjct: 136 QVVYIDTEGSFMADRFKEIAEHTRSELQPRASRRRKKQAALPSVEEMLEGVHVFRVHNYI 195

Query: 132 QALEITDM----LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           + + + +      +    V ++VIDS+A    RA+          G++ RL++ A ++L 
Sbjct: 196 EQIAVLNALPAFQIDHPQVKLVVIDSIAFHF-RADFHD------MGLRTRLLNGAAQQLL 248

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL------DIRRVGSIKD 241
           S  ++   +++  NQM   I     +     G        + R+      D R     K 
Sbjct: 249 SLATQHNIVVLITNQMTTTIKDGTATLIPALGE-TWAHACTTRVVLAFDGDTRSASLFKS 307

Query: 242 KDSITGN 248
                G+
Sbjct: 308 PSLPEGS 314


>gi|115461801|ref|NP_001054500.1| Os05g0121700 [Oryza sativa Japonica Group]
 gi|54287477|gb|AAV31221.1| putative DNA repair protein RAD51 [Oryza sativa Japonica Group]
 gi|113578051|dbj|BAF16414.1| Os05g0121700 [Oryza sativa Japonica Group]
 gi|215741250|dbj|BAG97745.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215741600|dbj|BAG98095.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218195995|gb|EEC78422.1| hypothetical protein OsI_18249 [Oryza sativa Indica Group]
 gi|222630019|gb|EEE62151.1| hypothetical protein OsJ_16938 [Oryza sativa Japonica Group]
          Length = 363

 Score = 56.8 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 73/189 (38%), Gaps = 30/189 (15%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCAFVDA 103
           +   GLD AL  GG P G++ E+ GP   GKT   L                G   ++D 
Sbjct: 84  TTLRGLDEAL-HGGIPAGKLTEVVGPSGIGKTQFCLKLALLATLPECYGGLNGRVLYIDT 142

Query: 104 EHALDSIYARKLGVD---------------LKNLLISQPDTGEQ---ALEITDMLVRSGA 145
           E    S    ++G                    +L+ +P +  +   +LE   + +    
Sbjct: 143 ESKFSSRRMIEIGEKSFPQIFRQEGLAQKMAGRILVLRPTSLSEFTKSLEQMKVTLLQHD 202

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           V ++V+DS+AAL        ++ +S  G++   +  AL  L S    S+  +V  NQ+R 
Sbjct: 203 VKLLVVDSMAALMS-----SEIEKSATGLRQHPLRWALSFLKSIAEFSQIPVVVTNQVRS 257

Query: 206 KIGVMFGSP 214
           +        
Sbjct: 258 QSNDDGYRY 266


>gi|320530201|ref|ZP_08031271.1| DNA repair protein RadA [Selenomonas artemidis F0399]
 gi|320137634|gb|EFW29546.1| DNA repair protein RadA [Selenomonas artemidis F0399]
          Length = 459

 Score = 56.8 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 66/170 (38%), Gaps = 13/170 (7%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
             E +   S+GS  LD  LG GG   G +V + G    GK++L L   A   + G    +
Sbjct: 65  TAEDLPRFSTGSGELDRVLG-GGVIPGSMVLVVGDPGVGKSSLTLRVSADIARAGRRVLY 123

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E +   I  R     L+ +        E  L+     V      + +IDS+  +  R
Sbjct: 124 VTGEESARQIRMRA--DRLRAIADDLLVVSETNLDAICAHVVREKPALFIIDSIQTMY-R 180

Query: 161 AEIEGDMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
            +IE   G  S     A  + +        I++++ I VF+     K G 
Sbjct: 181 PDIESAPGSVSQVRECAMELMR--------IAKTEGIAVFVIGHVTKEGS 222


>gi|313894859|ref|ZP_07828419.1| DNA repair protein RadA [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312976540|gb|EFR41995.1| DNA repair protein RadA [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 459

 Score = 56.8 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 66/170 (38%), Gaps = 13/170 (7%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
             E +   S+GS  LD  LG GG   G +V + G    GK++L L   A   + G    +
Sbjct: 65  TAEDLPRFSTGSGELDRVLG-GGVIPGSMVLVVGDPGVGKSSLTLRVSADIARAGRRVLY 123

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E +   I  R     L+ +        E  L+     V      + +IDS+  +  R
Sbjct: 124 VTGEESARQIRMRA--DRLRAIADDLLVVSETNLDAICAHVVREKPALFIIDSIQTMY-R 180

Query: 161 AEIEGDMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
            +IE   G  S     A  + +        I++++ I VF+     K G 
Sbjct: 181 PDIESAPGSVSQVRECAMELMR--------IAKTEGIAVFVIGHVTKEGS 222


>gi|125562706|gb|EAZ08086.1| hypothetical protein OsI_30353 [Oryza sativa Indica Group]
          Length = 280

 Score = 56.8 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 71/222 (31%), Gaps = 27/222 (12%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GTC 98
              E    + +G  G+D  LG GG  +G++ EI G  SSGKT + L + +       G  
Sbjct: 50  DATENKRFLPTGLQGVDALLG-GGLRQGQLTEITGQSSSGKTQVCLCSASHVAARQLGVV 108

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
            ++D  ++       ++       L+ +P        ++ ++ +S      + + +  L 
Sbjct: 109 MYLDTSNSFSPSRIARIVDGFPISLVREPKNVRLERVMSSIICKSVFDIFDLFEVLHQLE 168

Query: 159 PRAEIEGDMGESLPG--------------------MQARLMSQALRKLTSSISRSKCILV 198
              + + + G +                           +M      L          ++
Sbjct: 169 LSLKSKVNNGGNKICLLIIDSISSILAPINGGKYPRGRSMMISVAMILKKLAYEHNLSVL 228

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
             N M     V          G + K    VRL I R    K
Sbjct: 229 VTNHM-----VAGNGAPKPALGESWKTVPHVRLVISRERGSK 265


>gi|50725218|dbj|BAD34152.1| Trad-like protein [Oryza sativa Japonica Group]
 gi|50726165|dbj|BAD33684.1| Trad-like protein [Oryza sativa Japonica Group]
 gi|125604686|gb|EAZ43722.1| hypothetical protein OsJ_28349 [Oryza sativa Japonica Group]
          Length = 272

 Score = 56.8 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 71/222 (31%), Gaps = 27/222 (12%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GTC 98
              E    + +G  G+D  LG GG  +G++ EI G  SSGKT + L + +       G  
Sbjct: 42  DATENKRFLPTGLQGVDALLG-GGLRQGQLTEITGQSSSGKTQVCLCSASHVAARQLGVV 100

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
            ++D  ++       ++       L+ +P        ++ ++ +S      + + +  L 
Sbjct: 101 MYLDTSNSFSPSRIARIVDGFPISLVREPKNVRLERVMSSIICKSVFDIFDLFEVLHQLE 160

Query: 159 PRAEIEGDMGESLPG--------------------MQARLMSQALRKLTSSISRSKCILV 198
              + + + G +                           +M      L          ++
Sbjct: 161 LSLKSKVNNGGNKICLLIIDSISSILAPINGGKYPRGRSMMISVAMILKKLAYEHNLSVL 220

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
             N M     V          G + K    VRL I R    K
Sbjct: 221 VTNHM-----VAGNGAPKPALGESWKTVPHVRLVISRERGSK 257


>gi|87307673|ref|ZP_01089817.1| hypothetical protein DSM3645_29167 [Blastopirellula marina DSM
           3645]
 gi|87289843|gb|EAQ81733.1| hypothetical protein DSM3645_29167 [Blastopirellula marina DSM
           3645]
          Length = 237

 Score = 56.8 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYG-PESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++ S+GS  LD  L  GG  +G ++E  G   +SG  TLAL        +  T   +D+ 
Sbjct: 31  DITSTGSTALDELLPCGGVRRGGMIEWIGCTPASGAGTLALIAARHVCASNQTFLVIDSR 90

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQ 132
             +       LG+DL  +LI +P T ++
Sbjct: 91  RQISPAALANLGLDLAKILIVRPQTKQE 118


>gi|240850214|ref|YP_002971607.1| DNA repair protein RadA [Bartonella grahamii as4aup]
 gi|240267337|gb|ACS50925.1| DNA repair protein RadA [Bartonella grahamii as4aup]
          Length = 458

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 75/211 (35%), Gaps = 4/211 (1%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG I+ L S     E    + SG   LD   G GGF +G  + + G    GK+TL   T 
Sbjct: 52  KGRIVTLTSLSGNIEDAPRIHSGIAELDRVTG-GGFVRGSALLVGGDPGIGKSTLLTQTA 110

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A   + G    +V  E A+  I  R   ++  N  +          +I   L     +D+
Sbjct: 111 AALSRKGYNVIYVSGEEAIAQICLRAQRLEANNTEVKLAA-ETNVEDILATLSEHKNLDM 169

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM-KI 207
           ++IDS+  L            +   + A+ M +  +K T +       +    Q+   ++
Sbjct: 170 VIIDSIQTLWSDTADSSPGTVTQVRIGAQAMIRFAKK-TGAAVVLVGHVTKDGQIAGPRV 228

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
                       G     Y  +R    R G 
Sbjct: 229 VEHMVDGVLYFEGEGGHHYRILRTVKNRFGP 259


>gi|255659406|ref|ZP_05404815.1| DNA repair protein RadA [Mitsuokella multacida DSM 20544]
 gi|260848368|gb|EEX68375.1| DNA repair protein RadA [Mitsuokella multacida DSM 20544]
          Length = 461

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 3/117 (2%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E +    +GS  LD  LG GG   G +V I G    GK++L L   A   + G    +V
Sbjct: 68  LEDMPRFLTGSGELDRVLG-GGIIPGSMVLIVGDPGVGKSSLTLRVCADVARQGKKVLYV 126

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
             E +   +  R     L+ L        E  LE  +  V +   +++VIDS+  + 
Sbjct: 127 TGEESTRQVRMRA--DRLQALADDLLVVSETNLETIETHVENVKPELLVIDSIQTIF 181


>gi|307154651|ref|YP_003890035.1| putative circadian clock protein KaiC [Cyanothece sp. PCC 7822]
 gi|306984879|gb|ADN16760.1| putative circadian clock protein, KaiC [Cyanothece sp. PCC 7822]
          Length = 501

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 81/241 (33%), Gaps = 43/241 (17%)

Query: 26  VYGKGA-IMQLGSQG-SIFEGI-----------EVVSSGSLGLDIALGIGGFPKGRIVEI 72
            + KG   M+L  QG  +F  I           E +SSG   LD  L  GG  +G I  I
Sbjct: 229 DFRKGTHTMRLTCQGMEVFPSIIPEEFKREFAPETISSGIPDLDELL-QGGIERGTITII 287

Query: 73  YGPESSGKTTLALHTIAQSQKTGG---TCAFVDAEHALDSIYARKLGVDLKNL------- 122
            GP   GKTTL +  + ++   G     C F +A+  L       + + +  +       
Sbjct: 288 SGPSGVGKTTLGIQFMKEAAGRGERSLVCCFEEAQETLI-NRCESINIPVSRMLKQGTLS 346

Query: 123 ---LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
              +     T  +   +    V   +  I++IDS+A    R   +G             +
Sbjct: 347 IIPIEPLIYTPNEFANLVRSEVEKHSAQIVMIDSIAG--YRLSFKGAN-----------L 393

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
              +  L   +      ++ +N++   I   F   E             +R    R    
Sbjct: 394 VTHIHALCRYLKNMGVTVLLVNEVEA-ITGDFRVTELGI-SYLADNIIFLRYLEIRGELR 451

Query: 240 K 240
           K
Sbjct: 452 K 452



 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 85/261 (32%), Gaps = 16/261 (6%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+G  GLD  L +GG   G+   + G    GKTTL +H +      G     +    +
Sbjct: 27  RLSTGIAGLDEIL-MGGLIPGQAYLVRGGPGCGKTTLGMHFLVAGHHRGEVSLMITLGES 85

Query: 107 LDSIYAR--KLGVDLKNLLI------SQPDTGEQALEI-TDMLVRSGAVDIIVIDSVAAL 157
            + +      LG+ L  + I      S   T  Q+ +I +   V    +   +I+ + ++
Sbjct: 86  ENQLRRNASALGLSLDQIAILDLSPGSDFFTQMQSYDIFSPAEVERDPITQKIIEKIESI 145

Query: 158 TPRAEIEGDMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPET 216
            P+      + +            + +      +      +VFI +   +          
Sbjct: 146 HPQRVFVDSITQFRYLSSDPFQFRKQIVSFLRFLQEQGATIVFITEASPEAPDN-DLQFI 204

Query: 217 TTGGNALKFYSSVR---LDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY- 272
             G   L+F    R   +   R    +          +   V   +     + EF     
Sbjct: 205 ADGVITLEFVDEERTLSISKFRSSDFRKGTHTMRLTCQGMEVFPSIIPEEFKREFAPETI 264

Query: 273 GEGISFFGELIDLGVKASIVD 293
             GI    EL+  G++   + 
Sbjct: 265 SSGIPDLDELLQGGIERGTIT 285


>gi|316931404|ref|YP_004106386.1| putative circadian clock protein, KaiC [Rhodopseudomonas palustris
           DX-1]
 gi|315599118|gb|ADU41653.1| putative circadian clock protein, KaiC [Rhodopseudomonas palustris
           DX-1]
          Length = 563

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 60/162 (37%), Gaps = 12/162 (7%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + +S+G   LD  L  GGF +G  V + G   SGK++LA      + + G    ++  E 
Sbjct: 246 DRISTGVADLDAMLSGGGFYRGTSVLVSGVAGSGKSSLACMMADAACRRGDRALYLSFEE 305

Query: 106 ALDS--IYARKLGVDLKNLLIS----------QPDTGEQALEITDMLVRSGAVDIIVIDS 153
           +        + +G DL   L S             + E  L +    V     D++V+D 
Sbjct: 306 SEAQTVRNMKSVGTDLGRWLSSGQLRYIAARPTFYSLEMHLAVMLREVARFKPDLVVLDP 365

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           ++A T   ++       L  +     +      T     ++ 
Sbjct: 366 ISAFTESGQVGEVQSMLLRMVDYLKSNGITGVFTHLAHGAQT 407



 Score = 37.9 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 8/82 (9%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + +GI    +G  G D  L +GG P GR   + G    GKT  A   +    +  G    
Sbjct: 1   MVDGISKALTGIEGFDD-LTLGGLPTGRPSLVCGSAGCGKTLFASTFLINGARLYG---- 55

Query: 101 VDAEHALDSIYARKLGVDLKNL 122
              E  +   +  +    + N+
Sbjct: 56  ---EPGVFVTFEERAVDIVDNV 74


>gi|163845837|ref|YP_001633881.1| non-specific serine/threonine protein kinase [Chloroflexus
           aurantiacus J-10-fl]
 gi|222523548|ref|YP_002568018.1| putative circadian clock protein, KaiC [Chloroflexus sp. Y-400-fl]
 gi|163667126|gb|ABY33492.1| Non-specific serine/threonine protein kinase [Chloroflexus
           aurantiacus J-10-fl]
 gi|222447427|gb|ACM51693.1| putative circadian clock protein, KaiC [Chloroflexus sp. Y-400-fl]
          Length = 482

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 63/172 (36%), Gaps = 11/172 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + SG   LD  L  GG  +G I  I GP   GKTTL    + ++   G        E  +
Sbjct: 245 IPSGVPELDELLN-GGVERGTITLITGPSGVGKTTLGFQFMKEAASRGERSMVFSFEEEI 303

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           + +  R   V++      +    +Q L I + +             V     + +I+  M
Sbjct: 304 EIMQQRCEAVNIP----VRAMQKQQLLRI-EKIEPLQYNPAEFAQHVRYFIEQEQIKVVM 358

Query: 168 GESL----PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            +S+      M    +   L  L+  + +S+ + VF+      I   F   E
Sbjct: 359 IDSVTGYRLCMHGEDLISQLHALSKYL-QSRGVTVFLIMDTTDIVGDFKVTE 409



 Score = 43.7 bits (101), Expect = 0.041,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 60/176 (34%), Gaps = 15/176 (8%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
             + +++G  GLD   G G  P+   +   GP  +GKTTL LH +A     G T  F+  
Sbjct: 5   ATQRLATGIPGLDEICGGGLVPRYAYLVRGGP-GTGKTTLGLHFLAAGAANGETTLFISL 63

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E     I        +              L    +L  S + D      +  +   AE+
Sbjct: 64  EETESKIRWNAAQTGIN-------------LNQVHILDLSPSSDFFANTQIYDIFSPAEV 110

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSIS-RSKCILVFINQMRMKIGVMFGSPETTT 218
           E +          + +      L S    R      F  + ++   + F + + TT
Sbjct: 111 EREPITRQIVETVQRLQPTRVFLDSITQFRYLTPDTFQFRKQVISFLRFLAEQRTT 166


>gi|188992000|ref|YP_001904010.1| Putative RecA/DnaB superfamily regulatory protein [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167733760|emb|CAP51965.1| Putative RecA/DnaB superfamily regulatory protein [Xanthomonas
           campestris pv. campestris]
          Length = 513

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 77/212 (36%), Gaps = 12/212 (5%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VSSG   +D  L  GG  +G    + GP  SGKT +AL  +A +   G  C   + + 
Sbjct: 262 EAVSSGVQEVDDLL-HGGPLRGTSTLLTGPAGSGKTNVALQYVAAACARGEHCCIFEFDE 320

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
              ++ AR   + L      +     + L++    +  G     V  SV     R  +  
Sbjct: 321 RTGTLLARAESLGLDLRRHLESG-MLELLQMDPAELSPGEFAWQVRASVEQRNCRLLVID 379

Query: 166 DMGESLPGMQAR-LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
            +   L  M     +   + +L S +++S      IN               +TG   + 
Sbjct: 380 SLNGYLSSMPQEKQLMLQMHELLSYLNQSGVTTFLIN------PQHGLVGTMSTGNLNIS 433

Query: 225 FYSSVRLDIR---RVGSIKDKDSITGNQTRVK 253
           + +   +  R     G I+   S+  N++   
Sbjct: 434 YMADTVILFRFFEAQGRIRKALSVIKNRSGAH 465



 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +++G+ GLD  L  GG P  R+  + G   SGKTTLAL  + +    G +C ++     
Sbjct: 20  RIATGTSGLDTIL-RGGLPSNRLYLLEGQPGSGKTTLALQFLLEGASKGESCLYITLSET 78

Query: 107 LD--SIYARKLGVDLKNLLISQ 126
           LD     A+  G  L  L I +
Sbjct: 79  LDELQEVAQSHGWSLDALHIFE 100


>gi|94987058|ref|YP_594991.1| DNA repair protein RadA [Lawsonia intracellularis PHE/MN1-00]
 gi|94731307|emb|CAJ54670.1| predicted ATP-dependent serine protease [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 443

 Score = 56.4 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 78/218 (35%), Gaps = 13/218 (5%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           +  S+G   LD  LG G  P   ++ I G    GK+TL L     +   G    +V  E 
Sbjct: 64  QPFSTGIKVLDHILGKGLVPSSALL-IGGEPGIGKSTLLLQLAGATATLGKIVLYVSGEE 122

Query: 106 ALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           +L  I   A +L V   NLL        Q  +I  +L  S A D+++IDSV  LT     
Sbjct: 123 SLPQIKARAERLTVLHDNLLSMA---TSQVEDILPLLNTSEAPDLLLIDSVQTLTSSNAE 179

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
                 S     A        +L  +  + K  ++FI  +     +             +
Sbjct: 180 GLPGNVSQVRAVAT-------ELVEACKQGKTTVIFIGHVTKDGTLAGPRLLEHLVDTVI 232

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
                 R   R +  IK++          ++ ++ +  
Sbjct: 233 SLEGDRRHIFRLLRVIKNRFGPNQELLIFQMAQHGLEP 270


>gi|326484198|gb|EGE08208.1| hypothetical protein TEQG_07266 [Trichophyton equinum CBS 127.97]
          Length = 475

 Score = 56.4 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 72/201 (35%), Gaps = 32/201 (15%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL------- 115
           G  +G I E+ GP  SGKT+LA+     + K G T  ++D    +      K+       
Sbjct: 106 GIRRGEITELSGPRGSGKTSLAMTAAVNALKQGETVIWIDTAGPMCMSRFEKMLSRDSTP 165

Query: 116 ---GVDLKNLLISQPDTGEQALEITDMLV---RSGAVDIIVIDSVAALT---PRAEIEGD 166
                 L+NLL  QP T    L +    +         +IV+DS++ L     R+++   
Sbjct: 166 LETQDRLRNLLHFQPTTLAHLLALISHPIADFPPPNTGLIVVDSISCLFGSEFRSKLPAK 225

Query: 167 MGE--------SLPGMQARLMSQALR-------KLTSSISRSKCILVFINQMRMKIGVMF 211
           + +        S    +A+      R        L    S+  C ++ +N+M  +     
Sbjct: 226 LSKAKDLHGTGSRASKEAQESKLWWRLIGSLSSNLNGLASQFDCAVIVVNEMVTRFRSGQ 285

Query: 212 GSP-ETTTGGNALKFYSSVRL 231
                    G       + R+
Sbjct: 286 KPMLHVAISGYTWDTSVATRV 306


>gi|156848553|ref|XP_001647158.1| hypothetical protein Kpol_1036p43 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156117842|gb|EDO19300.1| hypothetical protein Kpol_1036p43 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 460

 Score = 56.4 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 79/225 (35%), Gaps = 28/225 (12%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           R+ +N V K + L   + +++  + K +   L  +       E+ S+G LGLD ALG GG
Sbjct: 48  RRSINEVAKFQRL--LILELEAQFNKKSQPVLLPKSQAP---ELFSTGDLGLDEALG-GG 101

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKL-- 115
                I EIYG  S+GK+ LA+      Q         G   ++  E  L +     +  
Sbjct: 102 IYTQCITEIYGESSTGKSQLAMLLSLCVQLPKSLGGLEGKSVYITTEGDLPTERLEGIIN 161

Query: 116 --------GVDLKNLLISQPDTGEQALEITDMLVR-----SGAVDIIVIDSVAALTPRAE 162
                   GV  + +     +       I D+ +      S      +I    +   R E
Sbjct: 162 SNETFSSNGVSQEKIFTVSCNDLINQEHILDVQLPVLLDNSKGSIKAIIIDSISHHLRVE 221

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           ++              +     KL     +    ++  NQ+  K 
Sbjct: 222 LQST-SYKESQENRHYIDILAEKLLLLAKKYNVAVIVTNQISDKP 265


>gi|145352958|ref|XP_001420800.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581035|gb|ABO99093.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 288

 Score = 56.4 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 1/105 (0%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E++ +G   +D  LG GG  +G+++EI GP +SGKT L L   A          +VD  
Sbjct: 38  LEILPTGCDAIDELLG-GGLRQGQLIEITGPSASGKTQLCLSAAASFAALDNRVVYVDTT 96

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
               +   ++L          +    E   +  +++      D+ 
Sbjct: 97  GGFSATRIKQLHRGFFAEDAEKAVVEEHLDKTLNLIAVHKCHDVF 141


>gi|255550293|ref|XP_002516197.1| DNA repair protein rad51, putative [Ricinus communis]
 gi|223544683|gb|EEF46199.1| DNA repair protein rad51, putative [Ricinus communis]
          Length = 294

 Score = 56.4 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 43/124 (34%), Gaps = 15/124 (12%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            I  ++SGS  LD  L  GG   G I EIYG   SGKT L        Q         G 
Sbjct: 100 EIIQITSGSRELDKIL-EGGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGK 158

Query: 98  CAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDMLVRSGAVDII 149
             ++DAE         ++           L+N+  ++    +    +            +
Sbjct: 159 AMYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMFGVAV 218

Query: 150 VIDS 153
           VI +
Sbjct: 219 VITN 222


>gi|328871813|gb|EGG20183.1| putative DNA repair protein [Dictyostelium fasciculatum]
          Length = 328

 Score = 56.4 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 73/241 (30%), Gaps = 49/241 (20%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCA 99
           + + +    LD  LG GG P  RI E  G    GKT LA                 G C 
Sbjct: 32  QNIITFCRELDNMLG-GGIPLQRITEFCGAPGVGKTQLAFQLAVNCCIPKILYGVEGKCI 90

Query: 100 FVDAEHALDSIYARKLGVD----------------------------LKNLLISQPDTGE 131
           F+D E        +++                               L+N++  +     
Sbjct: 91  FIDTEGGFYVDRVKQMADSLIEHLQIMGQTGTDQEKDAANQITVDSILENIMYYKIHHYI 150

Query: 132 QALEITDM----LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           + +         L     + +I+IDS+A    R         S  G + R++S   + L 
Sbjct: 151 EQVAFIHHLPLVLENDRNIKLIIIDSIAYPFRRHF-------SDMGARKRILSSMTQNLL 203

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTT---GGNALKFYSSVRLDIRRVGSIKDKDS 244
           S   +    +V +NQ+  KI     S        G            D +R   I     
Sbjct: 204 SIAEQYNVAVVIMNQVTTKILPNNQSMLVPCFNLGNYCANRVFLYWKDQQRHCHIYKSSL 263

Query: 245 I 245
           I
Sbjct: 264 I 264


>gi|328958767|ref|YP_004376153.1| DNA repair protein RadA [Carnobacterium sp. 17-4]
 gi|328675091|gb|AEB31137.1| DNA repair protein RadA [Carnobacterium sp. 17-4]
          Length = 456

 Score = 56.4 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 76/201 (37%), Gaps = 15/201 (7%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           Q      +  V +    L+  LG GG   G +V I G    GK+TL L   AQ    GG 
Sbjct: 62  QDITVSKVPRVKTKLKELNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSAQLNLAGGK 120

Query: 98  CAFVDAEHALDSIYARKLGVDLKNL-LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
             +V  E +   I  R   + +K       P+T    +      +     D ++IDS+  
Sbjct: 121 VLYVSGEESSSQIKMRANRLGVKGADFYIYPETD---MGAIRQTIEDLKPDYVIIDSIQT 177

Query: 157 LTPRAEIEGDMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
           +  +A+I G +G  S        + +        I+++  I +FI     K G + G   
Sbjct: 178 MN-QADITGAIGSVSQVRESTADLLK--------IAKTNNIAIFIVGHVTKEGSIAGPRM 228

Query: 216 TTTGGNALKFYSSVRLDIRRV 236
                + + ++   R    R+
Sbjct: 229 LEHMVDTVLYFEGERHHTFRI 249


>gi|47213355|emb|CAF92978.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 267

 Score = 56.4 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 68/195 (34%), Gaps = 25/195 (12%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           ++ LG    +  G+  +S G   LD  L  GG P G I E+ G  S+GKT LAL      
Sbjct: 62  VLHLGECPRLESGL-RLSVGCAVLDELL-RGGLPAGGITELSGQSSAGKTQLALQLCLCV 119

Query: 92  QKT---GGT---CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
           Q     GG      ++  E+       ++L  D   L    P +    L+ +D +    A
Sbjct: 120 QYPTQYGGLDSGAVYICTENCFPIRRLQQLISDQHALRPDVPPSLISTLKFSDRVYVEHA 179

Query: 146 VD-----IIVIDSVAALTPR------------AEIEGDMGESLPGMQARLMSQALRKLTS 188
            D       +   V  L  R            A   G+   +    + R M      L  
Sbjct: 180 ADLDSLQRCLSRRVPLLLARGLVRLLVLDSVAAVFRGEFQAAEWQERTRQMLSVSSTLHR 239

Query: 189 SISRSKCILVFINQM 203
                   ++ INQ+
Sbjct: 240 LSWDFATPVLCINQV 254


>gi|331092133|ref|ZP_08340963.1| DNA repair protein RadA [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330401905|gb|EGG81479.1| DNA repair protein RadA [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 450

 Score = 56.4 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 85/259 (32%), Gaps = 18/259 (6%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E   +G   LD  LG GG   G ++ + G    GK+TL L    +  +      ++  E 
Sbjct: 66  ERTKTGIEELDRVLG-GGIVPGSLILVGGDPGIGKSTLLLQVCQKLSQEKHQVLYISGEE 124

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +L  I  R   + +           E +L     ++     +I++IDS+  +        
Sbjct: 125 SLKQIKLRA--MRMGEFTDELSLLCETSLNTIRGVIERRKPEIVIIDSIQTMYSEDVTSA 182

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
               S       ++ Q  + L  SI     +         ++            G+    
Sbjct: 183 PGSVSQVRESTNVLMQLAKGLNISIFIVGHVTKEGTVAGPRVLEHMVDTVLYFEGDRHAS 242

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM-YGEGI-------S 277
           Y  +R    R GS  +     G     ++ ++ +       EF +    EG        S
Sbjct: 243 YRILRGVKNRFGSTNE----IG---VFEMRQSGLQEVKNPSEFMLNGKPEGASGSVVACS 295

Query: 278 FFGELIDLGVKASIVDKSG 296
             G    L    ++V +SG
Sbjct: 296 MEGTRPILLEIQALVCQSG 314


>gi|163868010|ref|YP_001609214.1| DNA repair protein RadA [Bartonella tribocorum CIP 105476]
 gi|161017661|emb|CAK01219.1| DNA repair protein [Bartonella tribocorum CIP 105476]
          Length = 458

 Score = 56.4 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 79/213 (37%), Gaps = 8/213 (3%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG I+ L S     +    + SG   LD   G GGF +G  + + G    GK+TL   T 
Sbjct: 52  KGRIVALTSLSGDIQDAPRIHSGIAELDRVTG-GGFVRGSALLVGGDPGIGKSTLLTQTA 110

Query: 89  AQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           A   + G    +V  E A+  I   A++LG     + ++     E   +I   L     +
Sbjct: 111 AALSRKGHNVIYVSGEEAIAQICLRAQRLGAHNTEVKLAAETNVE---DILATLSEHKNL 167

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM- 205
           D+++IDS+  L            +   + A+ M +  +K T +       +    Q+   
Sbjct: 168 DMVIIDSIQTLWSDTADSAPGTVTQVRIGAQAMIRFAKK-TGAAVVLVGHVTKDGQIAGP 226

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           ++            G     Y  +R    R G 
Sbjct: 227 RVVEHMVDGVLYFEGEGGHHYRILRTVKNRFGP 259


>gi|150392193|ref|YP_001322242.1| DNA repair protein RadA [Alkaliphilus metalliredigens QYMF]
 gi|149952055|gb|ABR50583.1| DNA repair protein RadA [Alkaliphilus metalliredigens QYMF]
          Length = 455

 Score = 56.4 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 79/222 (35%), Gaps = 16/222 (7%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEV-----VSSGSLGLDIALGIGGFPKGRIVEIYG 74
           + Q ++ + +  +M   ++    + ++        +G   L+  LG GG  KG +  I G
Sbjct: 37  IIQSKKEFNRSPVMVSRTKPQSIQMVQSGAHNRFDTGIKELNRVLG-GGLVKGALTLISG 95

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
               GK+TL L   +   +  G   +V  E + + I  R     L  L        E  +
Sbjct: 96  EPGIGKSTLILQASSAVAEKHGRVLYVSGEESEEQIKMRA--ERLNALAKDLYVVSETNV 153

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           ++ +  +       ++IDS+  L            S     A  + +        I +S+
Sbjct: 154 DVIEKYIEEYQPVFVIIDSIQTLFKEDLSSAPGSVSQVKECANNLMR--------IGKSQ 205

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
            I +FI     K G + G        + +  +   R    R+
Sbjct: 206 NIPMFIVAHVTKQGELAGPRVLEHMVDTVLHFEGERTQEFRI 247


>gi|114567872|ref|YP_755026.1| DNA repair protein RadA [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338807|gb|ABI69655.1| DNA repair protein RadA [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 451

 Score = 56.4 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 58/156 (37%), Gaps = 7/156 (4%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
                E     SSG    D  LG GG   G ++ + G    GK+TL L         G  
Sbjct: 56  NQLSAEDSPRFSSGLSEFDRVLG-GGIVPGSLILLGGDPGIGKSTLLLQVAGLIAAAGKR 114

Query: 98  CAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
             ++  E +L  I  R  +LG++   + +      EQ +++    +     D+I+IDS+ 
Sbjct: 115 ILYLSGEESLQQIRLRASRLGINNDTIFLLN----EQDIDLLHEYINDLDPDLIIIDSIQ 170

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
            +            S        + Q  +K+  ++ 
Sbjct: 171 TVYSSKLSSIPGSVSQLRESTAAVMQIAKKMDKAVF 206


>gi|222148126|ref|YP_002549083.1| DNA repair protein RadA [Agrobacterium vitis S4]
 gi|221735114|gb|ACM36077.1| DNA repair protein [Agrobacterium vitis S4]
          Length = 466

 Score = 56.4 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 72/210 (34%), Gaps = 2/210 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG  + L S     E    + +G   LD A G GGF +G  V I G    GK+TL +   
Sbjct: 52  KGRAVTLTSLSGEIEEAPRIPTGLSELDRATG-GGFVRGSAVLIGGDPGIGKSTLLMQAA 110

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A   + G    +V  E A+  +  R   ++  +  +          +I   +      D+
Sbjct: 111 AALSRQGHRVVYVSGEEAVAQVRLRAQRLNAADTDVLLAA-ETNVEDILATISEGKRPDL 169

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           ++IDS+  L            +      + M +  ++  +++     +         ++ 
Sbjct: 170 VIIDSIQTLWSDTADSAPGTVTQVRTGVQAMIRFAKQTGATMVLVGHVTKEGQIAGPRVV 229

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
                      G+    Y  +R    R G 
Sbjct: 230 EHMVDAVLYFEGDRGHHYRILRTVKNRFGP 259


>gi|325292457|ref|YP_004278321.1| DNA repair protein RadA [Agrobacterium sp. H13-3]
 gi|325060310|gb|ADY64001.1| DNA repair protein RadA [Agrobacterium sp. H13-3]
          Length = 466

 Score = 56.0 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 78/212 (36%), Gaps = 6/212 (2%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG  + L +     E    + +G   LD A G GGF +G  V I G    GK+TL +   
Sbjct: 52  KGRAVALTALSGEIEEAPRIPTGISELDRATG-GGFVRGSAVLIGGDPGIGKSTLLMQAA 110

Query: 89  AQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           A   + G    +V  E A+  +   A++LG    ++L++     E   +I   +      
Sbjct: 111 AALSRRGHRVIYVSGEEAVAQVRLRAQRLGAAETDVLLAAETNVE---DILATISEGKRP 167

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+++IDS+  L            +      + M +  ++  +++     +         +
Sbjct: 168 DLVIIDSIQTLWSDTADSAPGTVTQVRTGVQAMIRYAKQTGATMVLVGHVTKEGQIAGPR 227

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           +            G+    Y  +R    R G 
Sbjct: 228 VVEHMVDAVLYFEGDRGHHYRILRTVKNRFGP 259


>gi|323484658|ref|ZP_08090020.1| DNA repair protein radA [Clostridium symbiosum WAL-14163]
 gi|323694808|ref|ZP_08108963.1| DNA repair protein radA [Clostridium symbiosum WAL-14673]
 gi|323402041|gb|EGA94377.1| DNA repair protein radA [Clostridium symbiosum WAL-14163]
 gi|323501124|gb|EGB17031.1| DNA repair protein radA [Clostridium symbiosum WAL-14673]
          Length = 459

 Score = 56.0 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 68/184 (36%), Gaps = 19/184 (10%)

Query: 16  LEAALSQIQRVYGKG---AIMQLGSQGS--------IFEGIEVVSSGSLGLDIALGIGGF 64
           +E  +SQI +  GKG   +  ++ +  +        + +  + + +G   LD  LG  G 
Sbjct: 35  VEEPVSQI-KTVGKGGTGSARKVSADTARPVMLSEIVLDEEDRIRTGFDELDRVLGS-GI 92

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNL 122
            +G +V + G    GK+TL L              ++  E +L  I   A ++G     L
Sbjct: 93  VRGSLVLVGGDPGIGKSTLLLQVCRNLAGQNQKILYISGEESLKQIKLRANRIGTVTGPL 152

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
                      L   + +++    D +VIDS+  +            S       ++ Q 
Sbjct: 153 SFLCETN----LGTIEEVIKRTMPDAVVIDSIQTMYMEEVTSAPGSVSQVRECTNILMQI 208

Query: 183 LRKL 186
            + L
Sbjct: 209 AKGL 212


>gi|315231057|ref|YP_004071493.1| circadian clock KaiC-like protein [Thermococcus barophilus MP]
 gi|315184085|gb|ADT84270.1| circadian clock KaiC-like protein [Thermococcus barophilus MP]
          Length = 452

 Score = 56.0 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 60/151 (39%), Gaps = 18/151 (11%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +S+G   LD  L  GG  +G I  I G   +GKTT  LH    +   G    ++  E 
Sbjct: 235 EKISTGIKELDAIL-DGGVYRGSITLIVGMTGTGKTTFGLHFAIANALQGRKAIYISFEE 293

Query: 106 ALDS--IYARKLGVDLKNL---------LISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           ++      AR+ G+ +  +          + +  T          ++     +++VIDS+
Sbjct: 294 SVGQLKRAARRYGMPVDEVLDKTLKMFSWVPEAKTPVHTFLKIREIIDEHKPEVLVIDSL 353

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRK 185
            +L         M E+      R +S  +++
Sbjct: 354 TSL------REHMNETELEKMLRYLSLIIKQ 378



 Score = 37.1 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 14/123 (11%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G    D  +   GFP+G ++ + G   +GKT      I    +  G      +      
Sbjct: 3   TGIEFFDETIIREGFPEGSLIIVAGEPGTGKTIFTSTIIHNGLEKFGEKGMYISLSETKE 62

Query: 110 IY---ARKLGVDLK-----------NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
            +    ++LG+D +           +L+   PD  E+ +E+    + S     IVIDS+ 
Sbjct: 63  DFYDEMKRLGMDFEKYEKSGLFRFMDLVTVTPDVIEKEIELIMKEILSFRPKRIVIDSIT 122

Query: 156 ALT 158
           ALT
Sbjct: 123 ALT 125


>gi|195399463|ref|XP_002058339.1| GJ16038 [Drosophila virilis]
 gi|194150763|gb|EDW66447.1| GJ16038 [Drosophila virilis]
          Length = 245

 Score = 56.0 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 10/122 (8%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ----- 92
           +    E    +++G   LD  L  GG   G++ E+ G   +GKT L +      Q     
Sbjct: 7   KNLKAEKSPTITTGITALDKCL-RGGIRPGKVYELVGKPGTGKTQLCMKLCLNVQIPRYA 65

Query: 93  -KTGGTCAFVDAEHALDSIYARKLGVDLK---NLLISQPDTGEQALEITDMLVRSGAVDI 148
                   + D     +    ++L  DL            T  Q L+    +       +
Sbjct: 66  CGLASKALYFDTRKDFNPARLKELADDLAARLRCTSISAPTATQMLQNVYYVDCRNTAQL 125

Query: 149 IV 150
           + 
Sbjct: 126 VA 127


>gi|254172470|ref|ZP_04879145.1| circadian clock protein kinase KaiC, putative [Thermococcus sp.
           AM4]
 gi|214033399|gb|EEB74226.1| circadian clock protein kinase KaiC, putative [Thermococcus sp.
           AM4]
          Length = 234

 Score = 56.0 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+G  GLD  LG GG   GR   + GP  +GKT LA+H      + G    +V  E
Sbjct: 2   VERISTGIPGLDEMLG-GGLIAGRAYLVEGPPGAGKTILAMHFAMAGVERGENALYVTLE 60

Query: 105 HALDSIYARKLG 116
              D +     G
Sbjct: 61  EPADQLKEDMAG 72


>gi|83953869|ref|ZP_00962590.1| DNA repair protein RadA [Sulfitobacter sp. NAS-14.1]
 gi|83841814|gb|EAP80983.1| DNA repair protein RadA [Sulfitobacter sp. NAS-14.1]
          Length = 455

 Score = 56.0 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 85/255 (33%), Gaps = 31/255 (12%)

Query: 25  RVYG--KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           +  G  +GA M L    +         SG   LD  LG G  P   I+ + G    GK+T
Sbjct: 46  KSLGTRRGAAMVLTDLTTKDTPPPRSQSGIAELDRVLGGGLVPSSAIL-VGGDPGIGKST 104

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L   A   ++G    +V  E A   +  R   + L +  +         L      + 
Sbjct: 105 LLLQAAAHFARSGLKTIYVSGEEASAQVRMRAQRLGLSDASVQLAAETN--LRDILTTLE 162

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
               D+++IDS+  +            S     A        +LTS   R    ++ +  
Sbjct: 163 EEKPDLVIIDSIQTMWADNVDSAPGSVSQVRAAAH-------ELTSFAKRRGVSVILVGH 215

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV-KVVKNKMAS 261
           +     +         G   ++      L               G+Q R+ + VKN+   
Sbjct: 216 VTKDGQI--------AGPRVVEHMVDTVLYFEGER---------GHQFRILRAVKNRFGP 258

Query: 262 PFKQVEFDIMYGEGI 276
             +   F++  GEG+
Sbjct: 259 ADEIGVFEMT-GEGL 272


>gi|86159601|ref|YP_466386.1| putative circadian clock protein, KaiC [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776112|gb|ABC82949.1| putative circadian clock protein, KaiC [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 494

 Score = 56.0 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 45/128 (35%), Gaps = 15/128 (11%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VS+G  GLD  LG GG P   I  + G   SGKT LAL  +  + + G    +    
Sbjct: 10  LERVSTGVEGLDQVLG-GGIPAKSITVVSGEPGSGKTVLALQMLFHAARQGKRSLYFTTL 68

Query: 105 --------------HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
                            D     +    +      +      AL      V     D++V
Sbjct: 69  SEPSLKLVRHMQGFRFFDPRLLDEKVRIVDLGSRLRAHDPAAALATVVERVEESEPDLVV 128

Query: 151 IDSVAALT 158
           IDS  AL 
Sbjct: 129 IDSFKALH 136


>gi|50294774|ref|XP_449798.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49529112|emb|CAG62776.1| unnamed protein product [Candida glabrata]
          Length = 466

 Score = 56.0 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 69/190 (36%), Gaps = 25/190 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGGT---CAFV 101
            ++G LG+D  LG GG     I EI+G  S+GK+ L +      Q     GG    C F+
Sbjct: 86  FTTGDLGIDEVLG-GGISTNCITEIFGESSTGKSQLLMQLCLSVQLPISEGGLNAKCVFI 144

Query: 102 DAEHALDSIY----------ARKLGVDLKNLLISQPDTGEQALEITDMLVR------SGA 145
             E  L +              +LG+   N+             I ++ +        G 
Sbjct: 145 TTEGDLPTNRLAGMIEARKDWHELGISQSNIFTVSCPDLISQEHIVNVQLPVLLERNKGE 204

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           + +I+IDS++             +SL       +++   KL    ++    +V  NQ+  
Sbjct: 205 IKLIIIDSISHHLRVELDTKSFKDSL--ENKAYITEMAEKLQGIATKHSVAIVVANQVGD 262

Query: 206 KIGVMFGSPE 215
           K       P 
Sbjct: 263 KPLNENLDPY 272


>gi|284176049|ref|ZP_06390018.1| putative circadian clock protein, KaiC [Sulfolobus solfataricus
           98/2]
 gi|261600948|gb|ACX90551.1| putative circadian clock protein, KaiC [Sulfolobus solfataricus
           98/2]
          Length = 262

 Score = 56.0 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 97/260 (37%), Gaps = 26/260 (10%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +  +S+G    D  L  GG P+G  + + G   +GKT  +LH IA+  K G  C +V  E
Sbjct: 2   VSRLSTGIPEFDK-LVQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLKEGDPCIYVTTE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
            + DSI  +      K       +  E+ L I D L+R       +++         E+ 
Sbjct: 61  ESRDSIIRQA-----KQFNWDFEEYIEKKLIIIDALMREKEDQWALVNLTP-----EELI 110

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL- 223
             + E+   +        +  +++       +   I+    ++   +      T   A+ 
Sbjct: 111 NKVIEAKQKLGYGKSRLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAIT 170

Query: 224 ---------KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
                    +  +   +  RR+  +K+ +    ++  +     +        E DI+ G+
Sbjct: 171 TSQAFGFGVEHVADGIIRFRRM--VKNGEL---HRYILIEKMRQTDHDKHVWEIDIVNGK 225

Query: 275 GISFFGELIDLGVKASIVDK 294
           GI   G L +     ++ +K
Sbjct: 226 GIVLKGRLEERREDYTLPEK 245


>gi|303272033|ref|XP_003055378.1| Rad51 DNA recombinase 3 [Micromonas pusilla CCMP1545]
 gi|226463352|gb|EEH60630.1| Rad51 DNA recombinase 3 [Micromonas pusilla CCMP1545]
          Length = 354

 Score = 56.0 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 83/257 (32%), Gaps = 53/257 (20%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           + + S  LD  LG GG   G I E+ G    GKT + +   A  Q         G   +V
Sbjct: 95  IYTFSSELDALLG-GGVAAGEITELCGCPGIGKTQMCVQLCASVQIPHAFGGYDGEAVYV 153

Query: 102 DAE---------------------------------HALDSIYARKLGVDLKNLLISQPD 128
           D E                                  A+ S  A ++   +      +  
Sbjct: 154 DTEGSFMAERAEEIAEATARHLRSVSNASPEDAGMSDAIASFTAERMLERVHLFRCHEVT 213

Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
                LE     V+   V ++V+DSVA    R +           ++  ++++  ++L  
Sbjct: 214 ELLAVLEALPAYVKKHRVRLVVVDSVAFHF-RQDFRD------MALRTTILAKMTQRLQQ 266

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTG-GNALKFYSSVRL-----DIRRVGSIKDK 242
             S +   +V +NQ+ +K     G        G +     + R+     D  R   +   
Sbjct: 267 LASENALAVVTVNQVTVKPDPRGGGARLVPALGESYAHACTTRIILSWEDDTRTAYLYKS 326

Query: 243 DSITGNQTRVKVVKNKM 259
             +   + R  V +  +
Sbjct: 327 PRLPQGRARYTVTEGGI 343


>gi|218780796|ref|YP_002432114.1| DNA repair protein RadA [Desulfatibacillum alkenivorans AK-01]
 gi|218762180|gb|ACL04646.1| DNA repair protein RadA [Desulfatibacillum alkenivorans AK-01]
          Length = 456

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 56/142 (39%), Gaps = 7/142 (4%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + +++G + LD  LG GG   G +V I G    GK+TL L  +      G    +V  E 
Sbjct: 71  DRLATGIMELDRVLG-GGLVAGSMVLIGGDPGIGKSTLMLQVMQSLAYAGLKVLYVSGEE 129

Query: 106 ALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           ++  I   +++ G    NL +      EQ L++            +V+DSV  L  +   
Sbjct: 130 SVRQIKLRSQRTGSPSPNLFVYSEIVLEQILDVL----DQEKPQAVVLDSVQTLYSQDLT 185

Query: 164 EGDMGESLPGMQARLMSQALRK 185
                 S        ++   +K
Sbjct: 186 SAPGSVSQVREVTFKLAMHAKK 207


>gi|163783503|ref|ZP_02178494.1| ATP-dependent protease sms [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881267|gb|EDP74780.1| ATP-dependent protease sms [Hydrogenivirga sp. 128-5-R1-1]
          Length = 444

 Score = 55.6 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 13/165 (7%)

Query: 29  KGAIMQLGSQGSIF-------EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           +G I+++ +Q  +        +  E  S+G   LD+ALG GG   G++V I G    GK+
Sbjct: 40  RGKILRVSTQAKVLSIDSWDEDSGERRSTGFENLDVALG-GGLVPGQVVLIAGEPGIGKS 98

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALD-SIYARKLGVDLKNLLISQPDTGEQALEITDML 140
           TL L    +  + G        E     ++  R+LG+  + +L+      E  LE+ +  
Sbjct: 99  TLLLQVSERYTRYGKVLYVSGEESGSQIAVRGRRLGISSQKILLYPETLFENVLEVLEQE 158

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
             S    ++VIDS+  L            S        +++  ++
Sbjct: 159 EPS----LLVIDSIQTLYSEKLESSAGSVSQVREVTFRLAEVCKE 199


>gi|222480120|ref|YP_002566357.1| putative circadian clock protein, KaiC [Halorubrum lacusprofundi
           ATCC 49239]
 gi|222453022|gb|ACM57287.1| putative circadian clock protein, KaiC [Halorubrum lacusprofundi
           ATCC 49239]
          Length = 499

 Score = 55.6 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 68/182 (37%), Gaps = 24/182 (13%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +SSG    D  L  GG  +G +  + GP   GKTTL+   + ++   G        E 
Sbjct: 243 EQISSGIPEFDELL-HGGIERGTVTVVSGPTGVGKTTLSTQFMKEAAGRGERSVIYLFEE 301

Query: 106 --ALDSIYARKLGVDLKNLL----------ISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
                   +R + + +  ++           +   + ++   +    V     DI++ID 
Sbjct: 302 NKGTFLTRSRAVNIPVDEMMEKGTLQVNEVEALERSPQEFGRMVREEVEERGADIVMIDG 361

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           +A    R  + G+ G         +M Q +  L   +  +    +F+++ R   G    +
Sbjct: 362 IAG--YRLTLRGEEG---------MMLQQMHALGRYLKNAGVTAIFVDETRNVTGEFQAT 410

Query: 214 PE 215
            E
Sbjct: 411 ME 412



 Score = 44.8 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 88/259 (33%), Gaps = 16/259 (6%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G  GLD  L  GG    R   + G   SGKT L+ H + Q    G T  F++ E  L 
Sbjct: 10  STGIRGLDEVLS-GGLVPERSYMVRGQAGSGKTILSFHFLQQGVDEGETVLFINLEEDLR 68

Query: 109 --SIYARKLGVDLKNLLI------SQPDTGEQALEI-TDMLVRSGAVDIIVIDSVAALTP 159
                A  LG D   +        +     + + E+     V    +   ++  V A+ P
Sbjct: 69  DLKANAAALGFDTDAIEFLDLSPSADVFVEDDSYEVFAPAEVEREPLTDKIVAGVTAVDP 128

Query: 160 RAEIEGDMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF--GSPET 216
              +   + +            + +      +   +  ++F  Q    +         + 
Sbjct: 129 DRVVVDPLTQLRFLLSDDYQFRKQVVGFMRFLKDREATVLFTVQNTESLPTDDLEFITDG 188

Query: 217 TTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK--QVEFDIMYGE 274
           T   +A ++  +VR+   R  + +  +           V   +    +     F+ +   
Sbjct: 189 TIRLDAAEYGKTVRVPKFRGSATQSGEHAYRVTDSGIEVYPALQPGKRDEDATFEQI-SS 247

Query: 275 GISFFGELIDLGVKASIVD 293
           GI  F EL+  G++   V 
Sbjct: 248 GIPEFDELLHGGIERGTVT 266


>gi|153855897|ref|ZP_01996859.1| hypothetical protein DORLON_02884 [Dorea longicatena DSM 13814]
 gi|149751800|gb|EDM61731.1| hypothetical protein DORLON_02884 [Dorea longicatena DSM 13814]
          Length = 455

 Score = 55.6 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 50/142 (35%), Gaps = 3/142 (2%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E   +G   LD  LG GG  +G +V + G    GK+TL L    +         ++  E 
Sbjct: 71  ERTKTGIKELDRVLG-GGIVQGSLVLVGGDPGIGKSTLLLQVCQKLADKQKKVLYISGEE 129

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +L  I  R     +     S     E  L     ++     D++VIDS+  +        
Sbjct: 130 SLKQIKLRA--NRMGEFADSLFLLCETNLAAIQSVIEKETPDVVVIDSIQTMYNEEVSSA 187

Query: 166 DMGESLPGMQARLMSQALRKLT 187
               S       ++ Q  + L 
Sbjct: 188 PGSVSQVRESTNVLMQLAKGLN 209


>gi|296131789|ref|YP_003639036.1| DNA repair protein RadA [Thermincola sp. JR]
 gi|296030367|gb|ADG81135.1| DNA repair protein RadA [Thermincola potens JR]
          Length = 456

 Score = 55.6 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 82/222 (36%), Gaps = 16/222 (7%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   LD  LG GG  +G ++ I G    GK+TL L   +      G   +V  E ++  
Sbjct: 72  TGIGELDRVLG-GGIVRGSLILIGGDPGIGKSTLGLQAASAISIKTGRVLYVSGEESIHQ 130

Query: 110 IYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
              R  +LG    +L I    + E  L      +     +++V+DS+  +          
Sbjct: 131 TKLRALRLGAVSPDLYIVSETSLEGILR----HIEKLQPNLVVVDSIQTVFTEEVHAAPG 186

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G S        + +        +++S  I VFI     K G + G        + + ++ 
Sbjct: 187 GVSQVRECTAHLMR--------LAKSTGIPVFIVGHVTKEGYLAGPRVLEHMVDTVLYFE 238

Query: 228 SVRLDIRRV-GSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
             R    RV  ++K++   T      ++ ++ +       E 
Sbjct: 239 GDRHHNFRVLRAVKNRFGSTNEIGVFEMGEHGLVPVANPSEI 280


>gi|299769069|ref|YP_003731095.1| DNA repair protein RadA [Acinetobacter sp. DR1]
 gi|298699157|gb|ADI89722.1| DNA repair protein RadA [Acinetobacter sp. DR1]
          Length = 462

 Score = 55.6 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 84/264 (31%), Gaps = 36/264 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            + +G    D  LG GG   G +V I G    GK+T+ L T         +  ++  E +
Sbjct: 73  RLPTGISEFDRVLG-GGLVTGSVVLIGGDPGIGKSTILLQTATYMASAKSSALYITGEES 131

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           L  +  R   +DL           E  +E    ++      + ++DS+  L         
Sbjct: 132 LSQVALRAQRLDLPT--DQLKVMAETCVERICEVLEQEKPVVAILDSIQTLYTETLQSAP 189

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
            G S     A L       LT     S    +FI     K G +        G   L+  
Sbjct: 190 GGVSQIRESAAL-------LTRYAKNSGT-ALFIVGHVTKEGAL-------AGPRVLEHM 234

Query: 227 SSVRLDI--------RRVGSIKDKDSITGNQTRVKVVKNKMASP--FKQVEFDIMYGEG- 275
               L          R + ++K++     N+  V  + +K           F   Y E  
Sbjct: 235 VDCVLYFEGQSDSRYRMIRAVKNRFGAV-NELGVFGMTDKGLREVANPSAIFLSRYDEAI 293

Query: 276 ------ISFFGELIDLGVKASIVD 293
                 IS  G    L    ++VD
Sbjct: 294 PGSIVMISREGTRPLLVEVQALVD 317


>gi|83942628|ref|ZP_00955089.1| DNA repair protein RadA [Sulfitobacter sp. EE-36]
 gi|83846721|gb|EAP84597.1| DNA repair protein RadA [Sulfitobacter sp. EE-36]
          Length = 455

 Score = 55.6 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 85/255 (33%), Gaps = 31/255 (12%)

Query: 25  RVYG--KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           +  G  +GA M L    +         SG   LD  LG G  P   I+ + G    GK+T
Sbjct: 46  KSLGTRRGAAMVLTDLTTKDTPPPRSQSGIAELDRVLGGGLVPSSAIL-VGGDPGIGKST 104

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L   A   ++G    +V  E A   +  R   + L +  +         L      + 
Sbjct: 105 LLLQAAAHFARSGLKTIYVSGEEASAQVRMRAQRLGLSDASVQLAAETN--LRDILTTLE 162

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
               D+++IDS+  +            S     A        +LTS   R    ++ +  
Sbjct: 163 EVKPDLVIIDSIQTMWADNVDSAPGSVSQVRAAAH-------ELTSFAKRRGVSVILVGH 215

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV-KVVKNKMAS 261
           +     +         G   ++      L               G+Q R+ + VKN+   
Sbjct: 216 VTKDGQI--------AGPRVVEHMVDTVLYFEGER---------GHQFRILRAVKNRFGP 258

Query: 262 PFKQVEFDIMYGEGI 276
             +   F++  GEG+
Sbjct: 259 ADEIGVFEMT-GEGL 272


>gi|225175211|ref|ZP_03729207.1| DNA repair protein RadA [Dethiobacter alkaliphilus AHT 1]
 gi|225169387|gb|EEG78185.1| DNA repair protein RadA [Dethiobacter alkaliphilus AHT 1]
          Length = 418

 Score = 55.6 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 71/178 (39%), Gaps = 13/178 (7%)

Query: 29  KGAIMQLGSQGSIFEGIEV--VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           KG   +  S  S+ +  E   +S+GS+ LD  LG GG   G +V I G    GK+TL L 
Sbjct: 15  KGTQAKAQSLSSVSDMAESARISTGSIELDRVLG-GGMVPGSLVLIGGDPGIGKSTLVLQ 73

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
                   G    +V  E +   +  R   + + + ++   +T   A+E   + +R    
Sbjct: 74  AARGLGTAGKKVLYVAGEESPAQLQMRARRLGVNSDILILAETDMTAIEEQVLAIR---P 130

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           D++++DS+  +  R E+    G          + +A              ++ I  + 
Sbjct: 131 DVVIVDSIQTVY-RPELTSAAG------SVSQLKEATATWMRLAKNENIAVMIIGHVT 181


>gi|300797883|ref|NP_001180066.1| DNA repair protein RAD51 homolog 2 [Bos taurus]
 gi|297479846|ref|XP_002691027.1| PREDICTED: RAD51-like 1 (S. cerevisiae) isoform 1 [Bos taurus]
 gi|296483014|gb|DAA25129.1| RAD51-like 1 isoform 1 [Bos taurus]
          Length = 364

 Score = 55.6 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 63/183 (34%), Gaps = 27/183 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCAFV 101
           +S+    LD AL  GG   G + EI GP   GKT   +                G   ++
Sbjct: 97  LSTTLSALDEAL-HGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYI 155

Query: 102 DAEHALDSIYARKL------------------GVDLKNLLISQPDTGEQALEITDMLVRS 143
           D E A  +    ++                     +        D   Q +E  +  + S
Sbjct: 156 DTESAFSAERLVEIAESRFPRYFDTEEKLLLTSSKVHLYRELSCDEVLQRIESLEEEIIS 215

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             V +++IDSVA++  R E +  +  +    + + +++    L          ++  NQ+
Sbjct: 216 KGVKLVIIDSVASVV-RKEFDTQLQGN-VRERNKFLAREAASLKYLAEEFSIPVILTNQI 273

Query: 204 RMK 206
              
Sbjct: 274 TTH 276


>gi|316973755|gb|EFV57314.1| DNA repair protein RAD51 [Trichinella spiralis]
          Length = 592

 Score = 55.6 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 7/103 (6%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---- 94
               E ++ + +    LD ALG GG   G++ E  GP   GKT L L             
Sbjct: 99  DRDVEDVQSIVTFCESLDNALG-GGIQLGQMTECAGPSGIGKTQLCLQLAVDVCIPKVLG 157

Query: 95  --GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
              G   ++D E A       ++     +      +T EQ + 
Sbjct: 158 GVDGEVIYIDTEGAFKYKRLNQIAEAAVSHCRRVAETEEQQIA 200


>gi|91975221|ref|YP_567880.1| circadian clock protein KaiC [Rhodopseudomonas palustris BisB5]
 gi|91681677|gb|ABE37979.1| circadian clock protein KaiC [Rhodopseudomonas palustris BisB5]
          Length = 562

 Score = 55.6 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 64/177 (36%), Gaps = 14/177 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           +  LG    +FE  E +S+G   LD  L  GGF +G  V + G   SGK++L+      +
Sbjct: 234 VSSLGLTHQVFE--ERISTGVRDLDRMLTGGGFYRGNSVLVSGVAGSGKSSLSCMMADAA 291

Query: 92  QKTGGTCAFVDAEHALDS--IYARKLGVDLKNLLIS----------QPDTGEQALEITDM 139
            + G    ++  E +        + +G DL   L S             + E  L +   
Sbjct: 292 CRRGEKALYMSFEESEAQTARNMKSVGTDLGPWLASGQLRYIAARPTFYSLEMHLAVILR 351

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
            V     D++V+D ++A     +I       L  +     +      T      +  
Sbjct: 352 EVTRFKPDVVVLDPISAFLGTGQIGEVQAMLLRIVDYLKSNGITGVFTHLAHGQETQ 408



 Score = 38.3 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 6/124 (4%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + EGI    +G  G D  L +GG P GR   + G    GKT  A   +    +  G    
Sbjct: 1   MTEGIAKSLTGIEGFDE-LTLGGLPSGRPSLVCGSAGCGKTLFASTFLINGARLYGEPGV 59

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID-SVAALTP 159
                         +  ++++L     +  +Q+    + +    +    V D  + AL  
Sbjct: 60  F----VTFEERPVDIVDNVQSLGFDLQELIDQSRVFIEHIALDPSEIAEVGDYDLEALFL 115

Query: 160 RAEI 163
           R E 
Sbjct: 116 RLEY 119


>gi|195450597|ref|XP_002072552.1| GK13653 [Drosophila willistoni]
 gi|194168637|gb|EDW83538.1| GK13653 [Drosophila willistoni]
          Length = 269

 Score = 55.6 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 7/106 (6%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAF 100
            +S+G+  LD+ L  GG P G+++E+ G   +GKT + +      Q         G   F
Sbjct: 22  RISTGNKSLDVHL-KGGIPLGKLIELIGNPGTGKTQMCMKLCLNVQLPRTLGGLDGESLF 80

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            D     +    ++L  + +    +   +     E     V     
Sbjct: 81  FDTRRDFNPNRLKELADEFERRYSTAGKSKAMNAEQMLRNVHYVQC 126


>gi|147903064|ref|NP_001079887.1| X-ray repair complementing defective repair in Chinese hamster
           cells 3 [Xenopus laevis]
 gi|33417158|gb|AAH56103.1| MGC69118 protein [Xenopus laevis]
          Length = 350

 Score = 55.6 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 77/230 (33%), Gaps = 27/230 (11%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            KA+ A L    +  G  A+     +       + +S G   LD  L  GG P   I EI
Sbjct: 50  QKAVSAVLR---KNLGVTALQMYSEKAKFPSQHQKLSLGCKVLDNFL-RGGIPLVGITEI 105

Query: 73  YGPESSGKTTLALHTIAQSQKT---GGT---CAFVDAEHALDSIYARKLGVDLKNLLISQ 126
            G  S+GKT + L      Q     GG      ++  E A  S   ++L      L    
Sbjct: 106 AGESSAGKTQIGLQLCLSVQYPVEYGGLASGAVYICTEDAFPSKRLQQLIKSQHKLRSDV 165

Query: 127 PDTGEQALEITDMLVRSGAVDI-----IVIDSVAALTPRAEIEGDMGESLPGMQAR---- 177
           P    + +   D +      D+      +   V  L  R  I   + +S+  +       
Sbjct: 166 PSDVIKNIRFGDSIFVEHTADVDTLTECIKKKVPVLLLRGSIRLVVIDSIAALFRCEFAA 225

Query: 178 --------LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
                    +     KL +  +R    ++ INQ+  ++  M    +   G
Sbjct: 226 KDAAVKAKHLQTLGAKLHNISNRFITPVLCINQVTDRVREMNSEQDDNLG 275


>gi|313672961|ref|YP_004051072.1| DNA replication and repair protein rada [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939717|gb|ADR18909.1| DNA replication and repair protein RadA [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 442

 Score = 55.2 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 83/240 (34%), Gaps = 28/240 (11%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +I +L S   I   ++   +G    D  LG GG  KG ++ I G    GK+T+ L   A 
Sbjct: 53  SIKKLSSISGI--EVDRFITGIKEFDQVLG-GGLVKGSVILIGGEPGIGKSTIMLQISAI 109

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
                    +   E +   I  R   + + N+ +    T     E    +++S   D  +
Sbjct: 110 LTNEKKKVIYFSGEESYSQIKIRADRLGIGNIELDIVSTNS--FENIQEILKSNFYDYAI 167

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDS+       EI    G          +      L   I++S    +FI     K G +
Sbjct: 168 IDSIQTFYSE-EISSAAGTV------SQIKHITHNLVE-IAKSIGTTIFIIGQVTKEGSI 219

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
                   G   L+      L         + D   G +  ++ VKN+     +   F++
Sbjct: 220 -------AGPKVLEHLVDTVLYF-------EGDYNRGIRI-LRSVKNRFGPTNEVGFFEM 264


>gi|241690305|ref|XP_002411756.1| DNA repair protein RAD51/RHP55, putative [Ixodes scapularis]
 gi|215504591|gb|EEC14085.1| DNA repair protein RAD51/RHP55, putative [Ixodes scapularis]
          Length = 354

 Score = 55.2 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 79/227 (34%), Gaps = 30/227 (13%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT-- 97
            +  G   +S G   LD  LG GG P   + E+ G   SGKT   L     +Q++ G   
Sbjct: 80  DLDSGQSTLSFGCPILDRFLG-GGLPTRGVTELSGESGSGKTQFCLQLSLMAQRSLGDGM 138

Query: 98  ---CAFVDAEHALDSIYARKLGVDLKN----LLISQPDTGEQALEITDMLVRSGAVD--- 147
                ++  E        R++  +L      L  +   +    L +    + +       
Sbjct: 139 PIYVVYICTEDRFPDRRLRQMQRELGPAGRSLSDNVLVSHVGELAMLMTCLETTLPSLRR 198

Query: 148 -----IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                ++V+DSVAAL  R+E E D G     +Q     + L  +   I RS   ++ +NQ
Sbjct: 199 TKRVGLLVLDSVAALF-RSEYEQDQG-----IQRAADLRKLGTVLDRIWRSGVAVLCVNQ 252

Query: 203 MRMKIGVMFGSPETTTG------GNALKFYSSVRLDIRRVGSIKDKD 243
           +   I         T        G       + RL + +        
Sbjct: 253 VTDLISSDHPMFPVTGASCVPSLGLTWGNVVTTRLFVSKTALTYAGA 299


>gi|242399963|ref|YP_002995388.1| DNA repair and recombination protein radA [Thermococcus sibiricus
           MM 739]
 gi|242266357|gb|ACS91039.1| DNA repair and recombination protein radA [Thermococcus sibiricus
           MM 739]
          Length = 526

 Score = 55.2 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 67/176 (38%), Gaps = 20/176 (11%)

Query: 82  TLALHTIAQSQKTG--GTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGE 131
           TLA+      ++ G  G+  ++D E+       +++           LKN+ +++     
Sbjct: 327 TLAVIVQKPPEEGGLNGSVVWIDTENTFRPERIKQIAESRGMDPDEVLKNIYVARAFNSN 386

Query: 132 QAL-------EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
             +       EI    + S     +++        R+E  G         + + +++ L 
Sbjct: 387 HQMLLVEKAEEIIKEKLPSEKPVKLLVVDSLTGHFRSEYVGR---GTLAERQQKLAKHLA 443

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
            L    +     +   NQ++ +    FG P    GG+ L   ++VR+ +R+  + K
Sbjct: 444 DLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATVRVYLRKGKAGK 499



 Score = 42.9 bits (99), Expect = 0.076,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
           G  M+          +  +++GS  LD  LG GG     + E++G   SGK
Sbjct: 104 GTFMRADEYFQKRAVVGKITTGSKSLDKLLG-GGIETQAVSEVFGEFGSGK 153


>gi|210615485|ref|ZP_03290612.1| hypothetical protein CLONEX_02828 [Clostridium nexile DSM 1787]
 gi|210150334|gb|EEA81343.1| hypothetical protein CLONEX_02828 [Clostridium nexile DSM 1787]
          Length = 451

 Score = 55.2 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 72/223 (32%), Gaps = 10/223 (4%)

Query: 26  VYGKGAIMQLGSQGSIF-------EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
            + K A  +L     +        +  E + +    LD  LG GG   G ++ + G    
Sbjct: 40  SFSKSASAKLIKDAEVVALKHVETDQEERIKTKIEELDRVLG-GGIVPGSLLLVGGDPGI 98

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           GK+TL L    +  +      ++  E +L  I  R     +           E  LEI  
Sbjct: 99  GKSTLLLQVCQRLCEDKHQVLYISGEESLKQIKLRA--NRMGEFTEDLLLLCETNLEIVK 156

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
            +++    ++++IDS+  +            S       +  Q  + L  SI     +  
Sbjct: 157 NVIQKRKPEVVIIDSIQTMYSEEVASAPGSVSQVRESTNVFMQLAKGLGISIFIVGHVTK 216

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
                  ++            G+    Y  +R    R GS  +
Sbjct: 217 EGTVAGPRVLEHMVDTVLYFEGDRHASYRILRGVKNRFGSTNE 259


>gi|297298124|ref|XP_001108071.2| PREDICTED: DNA repair protein RAD51 homolog 2 isoform 2 [Macaca
           mulatta]
          Length = 523

 Score = 55.2 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 62/183 (33%), Gaps = 27/183 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCAFV 101
           +S+    LD AL  GG   G + EI GP   GKT   +                G   ++
Sbjct: 235 LSTTLSALDEAL-HGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTHMGGLEGAVVYI 293

Query: 102 DAEHALDSIYARKL------------------GVDLKNLLISQPDTGEQALEITDMLVRS 143
           D E A  +    ++                     +        D   Q +E  +  + S
Sbjct: 294 DTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIIS 353

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             + +++IDSVA++  R E +  +  +L      L  +A   L          ++  NQ+
Sbjct: 354 KGIKLVIIDSVASVV-RKEFDTQLQGNLKERNKFLAREACS-LKYLAEEFSIPVILTNQI 411

Query: 204 RMK 206
              
Sbjct: 412 TTH 414


>gi|325663435|ref|ZP_08151845.1| DNA repair protein RadA [Lachnospiraceae bacterium 4_1_37FAA]
 gi|331086968|ref|ZP_08336043.1| DNA repair protein RadA [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|325470334|gb|EGC73565.1| DNA repair protein RadA [Lachnospiraceae bacterium 4_1_37FAA]
 gi|330409418|gb|EGG88861.1| DNA repair protein RadA [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 453

 Score = 55.2 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 79/228 (34%), Gaps = 12/228 (5%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           K++ A++ +++       I+ L    +  E  E + +    LD  LG GG   G ++ + 
Sbjct: 46  KSVLASVKEVE-------ILSLNDVETEHE--ERIYTKIGELDRVLG-GGIVPGSLILVG 95

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           G    GK+TL L    +         ++  E +L  I  R     +     +     E  
Sbjct: 96  GDPGIGKSTLLLQVCRELGGDQRKILYISGEESLRQIKLRA--KRMGEFSETVFLLSETN 153

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           LE    ++ S   +I++IDS+  +   A        S       +  Q  + L  SI   
Sbjct: 154 LEKIQGVLESRRPEIVIIDSIQTMYSEAVGSAPGSVSQVRESTNVFMQLAKGLGISIFIV 213

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
             +         ++            G+    Y  +R    R GS  +
Sbjct: 214 GHVTKEGTVAGPRVLEHMVDTVLYFEGDRHASYRILRAVKNRFGSTNE 261


>gi|145590491|ref|YP_001152493.1| putative circadian clock protein, KaiC [Pyrobaculum arsenaticum DSM
           13514]
 gi|145282259|gb|ABP49841.1| putative circadian clock protein, KaiC [Pyrobaculum arsenaticum DSM
           13514]
          Length = 267

 Score = 55.2 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 8/153 (5%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++ VS+G   LD AL  GG P+G  V + G    GK+ L +H      ++G    +V  E
Sbjct: 1   MKRVSTGVEELDRAL-EGGIPQGSWVVVTGEPGVGKSILCMHFAYAGLRSGDPVVYVTTE 59

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
                +  +   + +         +   A  I          +I+VID    L    ++ 
Sbjct: 60  QEFRDVMEQARQLGMD-------FSKFSAYNIAWRKEPEELPEIVVIDIFGLLKVARQLT 112

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
               E  P    R  + ++  L  +I+ +  +L
Sbjct: 113 EKAKEESPEKVRRYAALSIDTLIEAINEAYDLL 145


>gi|326921096|ref|XP_003206800.1| PREDICTED: DNA repair protein XRCC3-like [Meleagris gallopavo]
          Length = 347

 Score = 55.2 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 73/201 (36%), Gaps = 34/201 (16%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-- 94
            +  +    + +S G   LD  L  GG P   I E+ G  S+GKT + L      Q    
Sbjct: 71  DKDCLSSQCQKLSLGCSVLDDLL-KGGIPLVGITELAGESSAGKTQIGLQLCLCVQYPYR 129

Query: 95  -GGT---CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD--- 147
            GG      ++  E A  S   ++L      L    P    Q +   + +    A D   
Sbjct: 130 YGGLESGAVYICTEDAFPSKRLQQLIAQQHKLRADVPPEIIQKIRFGNSIFVEHAADLDT 189

Query: 148 -------------------IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
                              ++VIDS+AAL  R E     G S   ++AR +     +L  
Sbjct: 190 FHNCITKRLSLLLTRGTVRLVVIDSIAALF-RCEF----GASDSVLKARYLQTFGAQLHG 244

Query: 189 SISRSKCILVFINQMRMKIGV 209
             +R +  ++ INQ+   +  
Sbjct: 245 LSTRFRTPIMCINQVTDAVSE 265


>gi|319898713|ref|YP_004158806.1| DNA repair protein [Bartonella clarridgeiae 73]
 gi|319402677|emb|CBI76223.1| DNA repair protein [Bartonella clarridgeiae 73]
          Length = 461

 Score = 55.2 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 61/160 (38%), Gaps = 2/160 (1%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           +   KG I+ L S     E    + SG   LD   G GGF +G  + I G    GK+TL 
Sbjct: 48  KNIRKGHIVALTSLCGDIEDAPRIHSGIAELDRVTG-GGFVRGSALLIAGDPGIGKSTLL 106

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
             T A   + G    +V  E A+  I  R   +   N  +          +I   L    
Sbjct: 107 TQTAAALSQKGYNIIYVSGEEAIAQIRLRAQRLKATNTSVQLAA-ETNVEDILATLNTHK 165

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
            +D++++DS+  L            +   + A+ M +  +
Sbjct: 166 KLDMVIVDSIQTLWSDVADSAPGTVTQVRISAQAMIRFAK 205


>gi|288931257|ref|YP_003435317.1| circadian clock protein, KaiC [Ferroglobus placidus DSM 10642]
 gi|288893505|gb|ADC65042.1| putative circadian clock protein, KaiC [Ferroglobus placidus DSM
           10642]
          Length = 224

 Score = 55.2 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 3/76 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G  GLD  LG GG PKG +V + G   +GKTTL+LH I++  + G  C F+  E   
Sbjct: 3   LSTGIPGLDKMLG-GGIPKGYVVGVIGGYGTGKTTLSLHFISEGVRRGERCIFISFEEDE 61

Query: 108 DS--IYARKLGVDLKN 121
           +S    A+  G++L++
Sbjct: 62  ESIIETAKSFGMNLES 77


>gi|307294160|ref|ZP_07574004.1| DNA repair protein RadA [Sphingobium chlorophenolicum L-1]
 gi|306880311|gb|EFN11528.1| DNA repair protein RadA [Sphingobium chlorophenolicum L-1]
          Length = 455

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 68/202 (33%), Gaps = 6/202 (2%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
              S+G    D ALG GG   G    I G    GK+TL L   A+    G + A++  E 
Sbjct: 68  PRTSTGIAEFDRALG-GGIVSGSATLIGGDPGIGKSTLLLQAAARIASAGHSVAYISGEE 126

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           A D +  R   + L N  +    +     +I   L       +++IDS+  +        
Sbjct: 127 AADQVRLRAQRLGLGNAPVRLA-SATSVRDILTTLGEGAPPALLIIDSIQTMHSDLIEGA 185

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
               S     ++ + +  ++  +++     +    +    ++         +  G     
Sbjct: 186 PGTVSQVRASSQELIRFAKQRGTALILVGHVTKDGSIAGPRVLEHMVDTVLSFEGERSHQ 245

Query: 226 YSSVRLDIRRVGSIKDKDSITG 247
           Y  +R    R G         G
Sbjct: 246 YRILRAIKNRFG----GTDEIG 263


>gi|291406479|ref|XP_002719601.1| PREDICTED: RAD51-like 1 [Oryctolagus cuniculus]
          Length = 344

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 62/183 (33%), Gaps = 27/183 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCAFV 101
           + +    LD AL  GG   G + EI GP   GKT   +                G   ++
Sbjct: 83  LPTSLPALDEAL-RGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTDMGGLEGAVVYI 141

Query: 102 DAEHALDSIYARKL------------------GVDLKNLLISQPDTGEQALEITDMLVRS 143
           D E A  +    ++                     +        D   Q +E  +  + S
Sbjct: 142 DTESAFSAERLIEIAESRFPRYFNTEEKLLLTSSKVHLYRELSCDEVMQRIESLEEDIIS 201

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             V +++IDSVA++  R E +  +  +    + + +++    L          ++  NQ+
Sbjct: 202 KGVKLVIIDSVASVV-RKEFDTQLQGN-MKERNKFLAREASLLKYVAEEFSIPVILTNQI 259

Query: 204 RMK 206
              
Sbjct: 260 TTH 262


>gi|149737201|ref|XP_001500140.1| PREDICTED: similar to RAD51-like 1 [Equus caballus]
          Length = 350

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 63/183 (34%), Gaps = 27/183 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCAFV 101
           + +    LD AL  GG   G + EI GP   GKT   +                G   ++
Sbjct: 83  LPTTLSALDEAL-HGGVACGSLTEITGPPGCGKTQFCIMMSILATLPIDMGGLEGAVVYI 141

Query: 102 DAEHALDSIYARKL------------------GVDLKNLLISQPDTGEQALEITDMLVRS 143
           D E A  +    ++                    ++        D   Q +E  +  + S
Sbjct: 142 DTEAAFSAERLVEIAESRFPSYFNNEDKLLLTSSNVHLYRELSCDEVLQRVESLEEEIIS 201

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             V +++IDSVA++  R E +  +  +    + + +++    L          ++  NQ+
Sbjct: 202 KGVKLVIIDSVASVV-RKEFDTQLQGN-MRERNKFLAREAASLKYLAEEFSIPVILTNQI 259

Query: 204 RMK 206
              
Sbjct: 260 TTH 262


>gi|331005106|ref|ZP_08328509.1| DNA repair protein RadA [gamma proteobacterium IMCC1989]
 gi|330421075|gb|EGG95338.1| DNA repair protein RadA [gamma proteobacterium IMCC1989]
          Length = 462

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 66/167 (39%), Gaps = 15/167 (8%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E +  +++G+   D  LG GG   G +V I G   +GK+TL L  +        T  +V
Sbjct: 75  LEEVPRITTGTQEFDRVLG-GGLVSGSVVLIGGHPGAGKSTLLLQVLCHL-SEAHTTLYV 132

Query: 102 DAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +   A++LG+  +NL +      EQ     D +       I+VIDS+  +  
Sbjct: 133 TGEESLQQVAMRAQRLGLQSQNLNMLSETNVEQLCVTADTIRPK----IMVIDSIQVMHM 188

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
                   G +     A         LT    +S  IL+ +  +   
Sbjct: 189 SDVQSAPGGVTQVRESAAF-------LTRFAKQSGTILILVGHVTKD 228


>gi|270013771|gb|EFA10219.1| hypothetical protein TcasGA2_TC012415 [Tribolium castaneum]
          Length = 313

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 82/217 (37%), Gaps = 27/217 (12%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTC 98
           ++ +   ++ +G  G+D  L  GG   G I E+ GP +SGKT   L  I           
Sbjct: 74  NVLKNTAIIPTGIKGVDQLLN-GGLFTGNIYELCGPPASGKTHFVLTLIKNVILNMDQNV 132

Query: 99  AFVDAEHALDSIYARKLGVDLKN---------LLISQPDTG----EQALEITDMLVRSGA 145
              D ++   ++  +++  +            +++++  T         EI + L  +  
Sbjct: 133 HIFDTKNDFSAVKMKQMLKNCDEDRRTKSLGKIIVNRCYTRYDLINSLYEIKNDLENNMK 192

Query: 146 VDIIVIDSVAA--LTPRAEIEGDMGESLPGMQARLMS--QALRKLTSSISRSKCILVFIN 201
           + +I++DS+    L     +  ++  +      R ++    +  L +++  +     F  
Sbjct: 193 LRLIIVDSLPGVILNSNDHLTNNLYLNHIANIMRYIATEHHVAFLVTNLITTWTDGGFKT 252

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           Q          + ET T G       + RL I ++ +
Sbjct: 253 QQE--------TSETITCGKYWSSVPNTRLRIEKMEN 281


>gi|119601365|gb|EAW80959.1| RAD51-like 1 (S. cerevisiae), isoform CRA_b [Homo sapiens]
          Length = 420

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 63/183 (34%), Gaps = 27/183 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCAFV 101
           +S+    LD AL  GG   G + EI GP   GKT   +                G   ++
Sbjct: 83  LSTTLSALDEAL-HGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYI 141

Query: 102 DAEHALDSIYARKL------------------GVDLKNLLISQPDTGEQALEITDMLVRS 143
           D E A  +    ++                     +        D   Q +E  +  + S
Sbjct: 142 DTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIIS 201

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             + ++++DSVA++  R E +  +  +L     + +++    L          ++  NQ+
Sbjct: 202 KGIKLVILDSVASVV-RKEFDAQLQGNLKERN-KFLAREASSLKYLAEEFSIPVILTNQI 259

Query: 204 RMK 206
              
Sbjct: 260 TTH 262


>gi|114653599|ref|XP_001138853.1| PREDICTED: RAD51-like 1 isoform 3 [Pan troglodytes]
          Length = 346

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 63/183 (34%), Gaps = 27/183 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCAFV 101
           +S+    LD AL  GG   G + EI GP   GKT   +                G   ++
Sbjct: 83  LSTTLSALDEAL-HGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYI 141

Query: 102 DAEHALDSIYARKL------------------GVDLKNLLISQPDTGEQALEITDMLVRS 143
           D E A  +    ++                     +        D   Q +E  +  + S
Sbjct: 142 DTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIIS 201

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             + ++++DSVA++  R E +  +  +L     + +++    L          ++  NQ+
Sbjct: 202 KGIKLVILDSVASVV-RKEFDAQLQGNLKERN-KFLAREASSLKYLAEEFSIPVILTNQI 259

Query: 204 RMK 206
              
Sbjct: 260 TTH 262


>gi|114653607|ref|XP_001139007.1| PREDICTED: RAD51-like 1 isoform 5 [Pan troglodytes]
 gi|114653609|ref|XP_522884.2| PREDICTED: RAD51-like 1 isoform 6 [Pan troglodytes]
          Length = 384

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 63/183 (34%), Gaps = 27/183 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCAFV 101
           +S+    LD AL  GG   G + EI GP   GKT   +                G   ++
Sbjct: 83  LSTTLSALDEAL-HGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYI 141

Query: 102 DAEHALDSIYARKL------------------GVDLKNLLISQPDTGEQALEITDMLVRS 143
           D E A  +    ++                     +        D   Q +E  +  + S
Sbjct: 142 DTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIIS 201

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             + ++++DSVA++  R E +  +  +L     + +++    L          ++  NQ+
Sbjct: 202 KGIKLVILDSVASVV-RKEFDAQLQGNLKERN-KFLAREASSLKYLAEEFSIPVILTNQI 259

Query: 204 RMK 206
              
Sbjct: 260 TTH 262


>gi|114653603|ref|XP_001138666.1| PREDICTED: RAD51-like 1 isoform 1 [Pan troglodytes]
          Length = 347

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 63/183 (34%), Gaps = 27/183 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCAFV 101
           +S+    LD AL  GG   G + EI GP   GKT   +                G   ++
Sbjct: 83  LSTTLSALDEAL-HGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYI 141

Query: 102 DAEHALDSIYARKL------------------GVDLKNLLISQPDTGEQALEITDMLVRS 143
           D E A  +    ++                     +        D   Q +E  +  + S
Sbjct: 142 DTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIIS 201

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             + ++++DSVA++  R E +  +  +L     + +++    L          ++  NQ+
Sbjct: 202 KGIKLVILDSVASVV-RKEFDAQLQGNLKERN-KFLAREASSLKYLAEEFSIPVILTNQI 259

Query: 204 RMK 206
              
Sbjct: 260 TTH 262


>gi|114653605|ref|XP_001138936.1| PREDICTED: RAD51-like 1 isoform 4 [Pan troglodytes]
          Length = 348

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 63/183 (34%), Gaps = 27/183 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCAFV 101
           +S+    LD AL  GG   G + EI GP   GKT   +                G   ++
Sbjct: 83  LSTTLSALDEAL-HGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYI 141

Query: 102 DAEHALDSIYARKL------------------GVDLKNLLISQPDTGEQALEITDMLVRS 143
           D E A  +    ++                     +        D   Q +E  +  + S
Sbjct: 142 DTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIIS 201

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             + ++++DSVA++  R E +  +  +L     + +++    L          ++  NQ+
Sbjct: 202 KGIKLVILDSVASVV-RKEFDAQLQGNLKERN-KFLAREASSLKYLAEEFSIPVILTNQI 259

Query: 204 RMK 206
              
Sbjct: 260 TTH 262


>gi|114653601|ref|XP_001138758.1| PREDICTED: RAD51-like 1 isoform 2 [Pan troglodytes]
          Length = 350

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 63/183 (34%), Gaps = 27/183 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCAFV 101
           +S+    LD AL  GG   G + EI GP   GKT   +                G   ++
Sbjct: 83  LSTTLSALDEAL-HGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYI 141

Query: 102 DAEHALDSIYARKL------------------GVDLKNLLISQPDTGEQALEITDMLVRS 143
           D E A  +    ++                     +        D   Q +E  +  + S
Sbjct: 142 DTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIIS 201

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             + ++++DSVA++  R E +  +  +L     + +++    L          ++  NQ+
Sbjct: 202 KGIKLVILDSVASVV-RKEFDAQLQGNLKERN-KFLAREASSLKYLAEEFSIPVILTNQI 259

Query: 204 RMK 206
              
Sbjct: 260 TTH 262


>gi|60830799|gb|AAX36945.1| RAD51-like 1 [synthetic construct]
          Length = 351

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 63/183 (34%), Gaps = 27/183 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCAFV 101
           +S+    LD AL  GG   G + EI GP   GKT   +                G   ++
Sbjct: 83  LSTTLSALDEAL-HGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYI 141

Query: 102 DAEHALDSIYARKL------------------GVDLKNLLISQPDTGEQALEITDMLVRS 143
           D E A  +    ++                     +        D   Q +E  +  + S
Sbjct: 142 DTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIIS 201

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             + ++++DSVA++  R E +  +  +L     + +++    L          ++  NQ+
Sbjct: 202 KGIKLVILDSVASVV-RKEFDAQLQGNLKERN-KFLAREASSLKYLAEEFSIPVILTNQI 259

Query: 204 RMK 206
              
Sbjct: 260 TTH 262


>gi|60810438|gb|AAX36146.1| RAD51-like 1 [synthetic construct]
          Length = 385

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 63/183 (34%), Gaps = 27/183 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCAFV 101
           +S+    LD AL  GG   G + EI GP   GKT   +                G   ++
Sbjct: 83  LSTTLSALDEAL-HGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYI 141

Query: 102 DAEHALDSIYARKL------------------GVDLKNLLISQPDTGEQALEITDMLVRS 143
           D E A  +    ++                     +        D   Q +E  +  + S
Sbjct: 142 DTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIIS 201

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             + ++++DSVA++  R E +  +  +L     + +++    L          ++  NQ+
Sbjct: 202 KGIKLVILDSVASVV-RKEFDAQLQGNLKERN-KFLAREASSLKYLAEEFSIPVILTNQI 259

Query: 204 RMK 206
              
Sbjct: 260 TTH 262


>gi|62858301|ref|NP_001016923.1| RAD51 homolog C [Xenopus (Silurana) tropicalis]
 gi|58477631|gb|AAH89630.1| MGC107796 protein [Xenopus (Silurana) tropicalis]
 gi|89269806|emb|CAJ81518.1| RAD51 homolog C (S. cerevisiae) [Xenopus (Silurana) tropicalis]
          Length = 361

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 74/232 (31%), Gaps = 38/232 (16%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG + S    I   S     LD  LG GG P  +I EI G    GKT L +      Q  
Sbjct: 77  LGQEQSQGFVITFCS----ALDEILG-GGIPVAKITEICGVPGVGKTQLCMQLAVDVQIP 131

Query: 95  ------GGTCAFVDAEHALDSIYARKLGV--------------DLKNLLISQPDTGEQAL 134
                  G   F+D E +        +                D  ++   Q  T  + L
Sbjct: 132 ECFGGVAGETVFIDTECSFRLERLMDIANACVQHCNLIAQGHQDKDHIKAMQTFTLNEIL 191

Query: 135 EITDMLVRSGAVDII----VIDSVAALTPRAEIEGDMGESLPGMQARL--------MSQA 182
                      ++++    ++    +  P+ ++      + P   +          ++  
Sbjct: 192 SQIYYFSCHDYIELLAQINLLPDFLSSHPKVKLVVIDSIAFPFRHSFEDLSLRTRLLNGF 251

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
            ++L S        +V  NQM  KIG          G +     S++RL + 
Sbjct: 252 GQQLISLAHNCNLAVVLTNQMTTKIGPSDSKLVPALGES-WGHASTIRLILH 302


>gi|10835029|ref|NP_002868.1| DNA repair protein RAD51 homolog 2 isoform 1 [Homo sapiens]
 gi|2262209|gb|AAB63358.1| RecA-like protein [Homo sapiens]
 gi|2801405|gb|AAC39723.1| DNA repair protein RAD51B [Homo sapiens]
 gi|49168604|emb|CAG38797.1| RAD51L1 [Homo sapiens]
 gi|60819388|gb|AAX36498.1| RAD51-like 1 [synthetic construct]
 gi|61363118|gb|AAX42338.1| RAD51-like 1 [synthetic construct]
 gi|119601363|gb|EAW80957.1| RAD51-like 1 (S. cerevisiae), isoform CRA_a [Homo sapiens]
 gi|119601364|gb|EAW80958.1| RAD51-like 1 (S. cerevisiae), isoform CRA_a [Homo sapiens]
          Length = 350

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 63/183 (34%), Gaps = 27/183 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCAFV 101
           +S+    LD AL  GG   G + EI GP   GKT   +                G   ++
Sbjct: 83  LSTTLSALDEAL-HGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYI 141

Query: 102 DAEHALDSIYARKL------------------GVDLKNLLISQPDTGEQALEITDMLVRS 143
           D E A  +    ++                     +        D   Q +E  +  + S
Sbjct: 142 DTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIIS 201

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             + ++++DSVA++  R E +  +  +L     + +++    L          ++  NQ+
Sbjct: 202 KGIKLVILDSVASVV-RKEFDAQLQGNLKERN-KFLAREASSLKYLAEEFSIPVILTNQI 259

Query: 204 RMK 206
              
Sbjct: 260 TTH 262


>gi|46255039|ref|NP_598193.2| DNA repair protein RAD51 homolog 2 isoform 3 [Homo sapiens]
 gi|38258892|sp|O15315|RA51B_HUMAN RecName: Full=DNA repair protein RAD51 homolog 2; Short=R51H2;
           AltName: Full=RAD51 homolog B; Short=Rad51B; AltName:
           Full=RAD51-like protein 1
 gi|20987416|gb|AAH30219.1| RAD51-like 1 (S. cerevisiae) [Homo sapiens]
 gi|61364588|gb|AAX42568.1| RAD51-like 1 [synthetic construct]
 gi|123980046|gb|ABM81852.1| RAD51-like 1 (S. cerevisiae) [synthetic construct]
 gi|123994811|gb|ABM85007.1| RAD51-like 1 (S. cerevisiae) [synthetic construct]
 gi|261860168|dbj|BAI46606.1| RAD51-like 1 [synthetic construct]
          Length = 384

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 63/183 (34%), Gaps = 27/183 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCAFV 101
           +S+    LD AL  GG   G + EI GP   GKT   +                G   ++
Sbjct: 83  LSTTLSALDEAL-HGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYI 141

Query: 102 DAEHALDSIYARKL------------------GVDLKNLLISQPDTGEQALEITDMLVRS 143
           D E A  +    ++                     +        D   Q +E  +  + S
Sbjct: 142 DTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIIS 201

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             + ++++DSVA++  R E +  +  +L     + +++    L          ++  NQ+
Sbjct: 202 KGIKLVILDSVASVV-RKEFDAQLQGNLKERN-KFLAREASSLKYLAEEFSIPVILTNQI 259

Query: 204 RMK 206
              
Sbjct: 260 TTH 262


>gi|28193230|emb|CAD62357.1| unnamed protein product [Homo sapiens]
          Length = 375

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 63/183 (34%), Gaps = 27/183 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCAFV 101
           +S+    LD AL  GG   G + EI GP   GKT   +                G   ++
Sbjct: 92  LSTTLSALDEAL-HGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYI 150

Query: 102 DAEHALDSIYARKL------------------GVDLKNLLISQPDTGEQALEITDMLVRS 143
           D E A  +    ++                     +        D   Q +E  +  + S
Sbjct: 151 DTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIIS 210

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             + ++++DSVA++  R E +  +  +L     + +++    L          ++  NQ+
Sbjct: 211 KGIKLVILDSVASVV-RKEFDAQLQGNLKERN-KFLAREASSLKYLAEEFSIPVILTNQI 268

Query: 204 RMK 206
              
Sbjct: 269 TTH 271


>gi|19924117|ref|NP_598194.1| DNA repair protein RAD51 homolog 2 isoform 2 [Homo sapiens]
 gi|3005963|emb|CAA75680.1| R51H2 [Homo sapiens]
 gi|73808274|gb|AAZ85144.1| RAD51-like 1 (S. cerevisiae) [Homo sapiens]
          Length = 350

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 63/183 (34%), Gaps = 27/183 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCAFV 101
           +S+    LD AL  GG   G + EI GP   GKT   +                G   ++
Sbjct: 83  LSTTLSALDEAL-HGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYI 141

Query: 102 DAEHALDSIYARKL------------------GVDLKNLLISQPDTGEQALEITDMLVRS 143
           D E A  +    ++                     +        D   Q +E  +  + S
Sbjct: 142 DTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIIS 201

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             + ++++DSVA++  R E +  +  +L     + +++    L          ++  NQ+
Sbjct: 202 KGIKLVILDSVASVV-RKEFDAQLQGNLKERN-KFLAREASSLKYLAEEFSIPVILTNQI 259

Query: 204 RMK 206
              
Sbjct: 260 TTH 262


>gi|28375587|emb|CAD66573.1| unnamed protein product [Homo sapiens]
          Length = 394

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 63/183 (34%), Gaps = 27/183 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCAFV 101
           +S+    LD AL  GG   G + EI GP   GKT   +                G   ++
Sbjct: 93  LSTTLSALDEAL-HGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYI 151

Query: 102 DAEHALDSIYARKL------------------GVDLKNLLISQPDTGEQALEITDMLVRS 143
           D E A  +    ++                     +        D   Q +E  +  + S
Sbjct: 152 DTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIIS 211

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             + ++++DSVA++  R E +  +  +L     + +++    L          ++  NQ+
Sbjct: 212 KGIKLVILDSVASVV-RKEFDAQLQGNLKERN-KFLAREASSLKYLAEEFSIPVILTNQI 269

Query: 204 RMK 206
              
Sbjct: 270 TTH 272


>gi|118151310|ref|NP_001071585.1| DNA repair protein XRCC3 [Bos taurus]
 gi|122132264|sp|Q08DH8|XRCC3_BOVIN RecName: Full=DNA repair protein XRCC3; AltName: Full=X-ray repair
           cross-complementing protein 3
 gi|115304929|gb|AAI23743.1| X-ray repair complementing defective repair in Chinese hamster
           cells 3 [Bos taurus]
 gi|296475234|gb|DAA17349.1| DNA repair protein XRCC3 [Bos taurus]
          Length = 341

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 44/120 (36%), Gaps = 7/120 (5%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-- 92
           L  +G   E  + +S G   LD  L  GG P   I E+ G  S+GKT LAL      Q  
Sbjct: 69  LRQEGPFPEQHQRLSLGCPVLDALL-RGGLPLDGITELAGRSSAGKTQLALQLCLAVQLP 127

Query: 93  ----KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
                 G    +V  E A  S   ++L    + L    P      +     +    A D+
Sbjct: 128 PRHGGLGAGAVYVCTEDAFPSRRLQQLIAQQQRLRADVPGHVISKIRFGHQIFIEHAADV 187


>gi|297618414|ref|YP_003703573.1| DNA repair protein RadA [Syntrophothermus lipocalidus DSM 12680]
 gi|297146251|gb|ADI03008.1| DNA repair protein RadA [Syntrophothermus lipocalidus DSM 12680]
          Length = 454

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 3/117 (2%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E     SSG   LD  LG GG   G +V I G    GK+TL L         GG   ++ 
Sbjct: 60  EESSRFSSGLQELDRVLG-GGIVPGSLVLIGGDPGIGKSTLLLQAAGHIAARGGRVLYLS 118

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
            E +   I  R L + + +   S     EQ L++    +      ++++DS+  +  
Sbjct: 119 GEESGYQIRMRALRLGIDS--ESIYLLNEQNLDLLPEYLEETKPTVVIVDSIQTVFT 173


>gi|325190097|emb|CCA24579.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 401

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 76/216 (35%), Gaps = 39/216 (18%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL---------HTIAQSQKTGGTC 98
           + +    LD ALG GG   G I EI G    GKT  A+           +    +   T 
Sbjct: 93  LRTNLPTLDTALG-GGLHLGAITEIAGIAGVGKTQFAMTVALQILSDEILLAKDERTSTV 151

Query: 99  AFVDAEHALDSIYAR-------------------KLGVDLKNLLISQPDTGEQ----ALE 135
            + DAE  L+    +                   +    L  LLI + DT  Q     L+
Sbjct: 152 IYFDAEATLNVERLKLDQIATAMLNTRKGFCRDYRAEDLLDRLLIIKVDTLAQFLTKLLK 211

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           +   L       ++++DS+AAL   +     +GESL   +   +++  R+L       + 
Sbjct: 212 LGQNLRMMSGTKLLIVDSIAALYVHS-----IGESLTKKEF-WLTRIARELKFLSDNFQI 265

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
             +  N+               + G+    Y + RL
Sbjct: 266 CALLTNRAVSSFNEHGLRGSKPSLGDLWSHYVTYRL 301


>gi|319790945|ref|YP_004152585.1| DNA repair protein rada [Variovorax paradoxus EPS]
 gi|315593408|gb|ADU34474.1| DNA repair protein RadA [Variovorax paradoxus EPS]
          Length = 462

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/217 (20%), Positives = 74/217 (34%), Gaps = 15/217 (6%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I    +G   LD  LG GG   G +  I G    GK+TL L  +   Q+ G    +V  
Sbjct: 71  DIARTPTGIDELDRVLG-GGIVSGGVTLIGGDPGIGKSTLLLQAVDALQRAGQNALYVTG 129

Query: 104 EH--ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           E   A  ++ +R+LG+D   + +         LE     + +    I VIDS+  +    
Sbjct: 130 EESGAQVALRSRRLGLDHSQVQVLAEI----QLEKIIATLDATRPAIAVIDSIQTVYSDQ 185

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
                   +     A         LT     S   +V +  +  +  +            
Sbjct: 186 LTSAPGSVAQVRECAAH-------LTRFAKTSGTAVVLVGHVTKEGALAGPRVLEHMVDT 238

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
            L F        R V +IK++     N+  V  +  +
Sbjct: 239 VLYFEGDTHSSFRLVRAIKNRFGAV-NEIGVFAMTER 274


>gi|289547929|ref|YP_003472917.1| DNA repair protein RadA [Thermocrinis albus DSM 14484]
 gi|289181546|gb|ADC88790.1| DNA repair protein RadA [Thermocrinis albus DSM 14484]
          Length = 454

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 7/145 (4%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E  +  ++G   LD ALG GG   G+++ I G    GK+TL L    +  +  G   +V
Sbjct: 59  VESKDRFTTGFKNLDEALG-GGLVAGQVILIAGEPGIGKSTLLLQVSDRFSRLYGKVLYV 117

Query: 102 DAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +   I    +++GV    LL+         LE    ++   +  ++V+DSV  L  
Sbjct: 118 SGEESGPQISLRGQRIGVKSDQLLVLSETH----LETVLKVMEELSPKMVVVDSVQTLHS 173

Query: 160 RAEIEGDMGESLPGMQARLMSQALR 184
           +         S     +  +++  +
Sbjct: 174 QELESSAGSVSQVRECSFRLAEWCK 198


>gi|298675622|ref|YP_003727372.1| putative circadian clock protein KaiC [Methanohalobium evestigatum
           Z-7303]
 gi|298288610|gb|ADI74576.1| putative circadian clock protein, KaiC [Methanohalobium evestigatum
           Z-7303]
          Length = 295

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 73/222 (32%), Gaps = 23/222 (10%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
              +I   I+ + +G   LD +L  GG PKG  V + GP  +GKTT  +  + +  +   
Sbjct: 51  DVNNIDVNIKRMGTGIPSLDDSL-EGGIPKGFSVIVTGPPGTGKTTFCVQILMERIRNNE 109

Query: 97  TCAFVDAEHALD--SIYARKLGVDLK--------NLLISQPDTGEQALEITDMLVRSGAV 146
            C F   E   +       + G D+          +      T E+  +I    V S   
Sbjct: 110 KCVFFSFEEDAEHLVQQFMRYGWDIGEAIDKGYLEIFGMSIITSEEMTQI----VDSYRP 165

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D++V DS+  +    E     G      +    S   +K+TS +   K   +   Q    
Sbjct: 166 DVVVFDSL-NVFSNPEEFRTAGTW----RNVHRSLKRKKITSLMVTEKKHGLETKQFDDY 220

Query: 207 IG---VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245
                 +       T        S + +   R   I      
Sbjct: 221 DFLGDGIIFLDTVPTNDINPTPMSVMVVQKMRSTKIDTSPQP 262


>gi|262376592|ref|ZP_06069820.1| DNA repair protein RadA [Acinetobacter lwoffii SH145]
 gi|262308302|gb|EEY89437.1| DNA repair protein RadA [Acinetobacter lwoffii SH145]
          Length = 463

 Score = 54.8 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/264 (19%), Positives = 82/264 (31%), Gaps = 36/264 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            + +G    D  LG GG   G +V I G    GK+T+ L T            +V  E +
Sbjct: 74  RLPTGISEFDRVLG-GGLVTGSVVLIGGDPGIGKSTILLQTATHMASAKNPALYVTGEES 132

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           L  +  R   +DL           E  +E    ++      + ++DS+  L         
Sbjct: 133 LSQVALRAQRLDLPT--DQLKVMAETCVERICEVLAQQRPAVAILDSIQTLYTETLQSAP 190

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
            G S     A L       LT     S   L  +  +  +  +         G   L+  
Sbjct: 191 GGVSQIRESAAL-------LTRFAKNSGTSLFLVGHVTKEGAL--------AGPRVLEHM 235

Query: 227 SSVRLDI--------RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ--VEFDIMYGEG- 275
               L          R + ++K++     N+  V  + +K           F   Y E  
Sbjct: 236 VDCVLYFEGQSDSRYRMIRAVKNRFGAV-NELGVFGMTDKGLREVSNPSAIFLSRYDEAI 294

Query: 276 ------ISFFGELIDLGVKASIVD 293
                 IS  G    L    ++VD
Sbjct: 295 PGSIVMISREGTRPLLVEVQALVD 318


>gi|21231107|ref|NP_637024.1| hypothetical protein XCC1654 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768885|ref|YP_243647.1| hypothetical protein XC_2577 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21112741|gb|AAM40948.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574217|gb|AAY49627.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 513

 Score = 54.8 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 76/212 (35%), Gaps = 12/212 (5%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + VSSG   +D  L  GG  +G    + GP  SGKT LAL  +A +   G  C   + + 
Sbjct: 262 DAVSSGVQEVDDLL-HGGPLRGTSTLLTGPAGSGKTNLALQYVAAACARGEHCCIFEFDE 320

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
              ++ AR   + L      +     +  ++    +  G     V  SV     R  +  
Sbjct: 321 RTGTLLARAESLGLDLRRHLESG-LLELRQMDPAELSPGEFAWQVRASVEQRNCRLLVID 379

Query: 166 DMGESLPGMQAR-LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
            +   L  M     +   + +L S +++S      IN               +TG   + 
Sbjct: 380 SLNGYLSSMPQEKQLMLQMHELLSYLNQSGVTTFLIN------PQHGLVGTMSTGNLNIS 433

Query: 225 FYSSVRLDIR---RVGSIKDKDSITGNQTRVK 253
           + +   +  R     G I+   S+  N++   
Sbjct: 434 YMADTVILFRFFEAQGRIRKALSVIKNRSGAH 465



 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +++G+ GLD  L  GG P  R+  + G   SGKTTLAL  + +    G +C ++     
Sbjct: 20  RIATGTSGLDTIL-RGGLPSNRLYLLEGQPGSGKTTLALQFLLEGAAKGESCLYITLSET 78

Query: 107 LD--SIYARKLGVDLKNLLISQ 126
           LD     A+  G  L  L I +
Sbjct: 79  LDELQEVAQSHGWSLDALHIFE 100


>gi|326472536|gb|EGD96545.1| hypothetical protein TESG_03985 [Trichophyton tonsurans CBS 112818]
          Length = 440

 Score = 54.8 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 68/175 (38%), Gaps = 31/175 (17%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL------- 115
           G  +G I E+ GP  SGKT+LA+     + K G T  ++D    +      K+       
Sbjct: 106 GIRRGEITELSGPRGSGKTSLAMTAAVNALKQGETVIWIDTAGPMCMSRFEKMLSRDSTP 165

Query: 116 ---GVDLKNLLISQPDTGEQALEITDMLV---RSGAVDIIVIDSVAALT---PRAEIEGD 166
                 L+NLL  QP T    L +    +         +IV+DS++ L     R+++   
Sbjct: 166 LETQDRLRNLLHFQPTTLAHLLALISHPIADFPPPNTGLIVVDSISCLFGSEFRSKLPAK 225

Query: 167 MGE--------SLPGMQARLMSQALR-------KLTSSISRSKCILVFINQMRMK 206
           + +        S    +A+      R        L    S+  C ++ +N+M  +
Sbjct: 226 LSKAKDLHGTGSRASKEAQESKLWWRLIGSLSSNLNGLASQFDCAVIVVNEMVTR 280


>gi|149051555|gb|EDM03728.1| similar to RAD51-like 1 (predicted), isoform CRA_a [Rattus
           norvegicus]
          Length = 319

 Score = 54.8 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 66/197 (33%), Gaps = 27/197 (13%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI----- 88
           +L ++ S       +S+    LD AL  GG P G + E+ GP   GKT   +        
Sbjct: 69  ELKTRRSAHLSPAFLSTTLGALDEAL-HGGVPCGSLTEVTGPPGCGKTQFCIMMSVLATL 127

Query: 89  -AQSQKTGGTCAFVDAEHALDSIYARKL------------------GVDLKNLLISQPDT 129
             +     G   ++D E A  +    ++                     +        + 
Sbjct: 128 PTRLGGLEGAVLYIDTESAFTAERLVEIAESRFPQYFNTEEKLLLTSSRVHLCQELTCEG 187

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
             Q LE  +  + S  V ++++DS+A++  +       G      + + + +    L   
Sbjct: 188 LLQRLESLEEEIISKGVKLVIVDSIASVVRKEFDPQLQGN--IKERNKFLGKGASLLKYL 245

Query: 190 ISRSKCILVFINQMRMK 206
                  ++  NQ+   
Sbjct: 246 SGEFSVPVILTNQITTH 262


>gi|57529909|ref|NP_001006489.1| DNA repair protein XRCC3 [Gallus gallus]
 gi|53127776|emb|CAG31217.1| hypothetical protein RCJMB04_3f19 [Gallus gallus]
          Length = 347

 Score = 54.8 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 72/201 (35%), Gaps = 34/201 (16%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-- 94
            +       + +S G   LD  L  GG P   I E+ G  S+GKT + L      Q    
Sbjct: 71  DKDCFSSQCQKLSLGCSVLDDLL-KGGIPLVGITELAGESSAGKTQIGLQLCLCVQYPYR 129

Query: 95  -GGT---CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD--- 147
            GG      ++  E A  S   ++L      L    P    Q +   + +    A D   
Sbjct: 130 YGGLESGAVYICTEDAFPSKRLQQLIAQQHKLRADVPPEIIQKIRFGNSIFVEHAADLDT 189

Query: 148 -------------------IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
                              ++VIDS+AAL  R E     G S   ++AR +     +L  
Sbjct: 190 FHNCITKRLSLLLTRGMVRLVVIDSIAALF-RCEF----GASDSVLKARYLQTFGAQLHG 244

Query: 189 SISRSKCILVFINQMRMKIGV 209
             +R +  ++ INQ+   +  
Sbjct: 245 LSTRFRTPIMCINQVTDAVSE 265


>gi|49474083|ref|YP_032125.1| DNA repair protein RadA [Bartonella quintana str. Toulouse]
 gi|49239587|emb|CAF25944.1| DNA repair protein [Bartonella quintana str. Toulouse]
          Length = 464

 Score = 54.8 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 77/216 (35%), Gaps = 14/216 (6%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           +G I+ L S     E    + SG   LD   G GGF +G  + + G    GK+TL   T 
Sbjct: 52  RGRIVALTSLSGNLEDAPRIHSGIAELDRVTG-GGFVRGSALLVGGDPGIGKSTLLTQTA 110

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A   + G    +V  E A+  I  R   +   N  +          +I   L     +D+
Sbjct: 111 AALSRKGHHVIYVSGEEAIAQICLRAQRLRTANTEVKLAA-ETNVEDILATLSEHKNLDM 169

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK------LTSSISRSKCILVFINQ 202
           ++IDS+  L   A        +   +  + M +  +K      L   +++   +      
Sbjct: 170 VIIDSIQTLWSDAADSAPGTVTQVRISVQAMIRFAKKTGAAVVLVGHVTKEGQMAGPRVV 229

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
             M  GV +   E T        Y  +R    R G 
Sbjct: 230 EHMVDGVFYFEGEGT------HHYRILRSVKNRFGP 259


>gi|320100447|ref|YP_004176039.1| putative circadian clock protein, KaiC [Desulfurococcus mucosus DSM
           2162]
 gi|319752799|gb|ADV64557.1| putative circadian clock protein, KaiC [Desulfurococcus mucosus DSM
           2162]
          Length = 264

 Score = 54.8 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 63/156 (40%), Gaps = 7/156 (4%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
             E + SG  GLD  +  GG P+G +V + G   +GKT +++  IA+  +TG    +V  
Sbjct: 2   NTERIPSGVPGLDELI-DGGIPRGFMVAVVGEPGTGKTAMSIQFIAKGLETGDKAVYVTT 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV--IDSVAALTPRA 161
           E + +SI  +    ++      +P   E  L + D L+        +  +D    ++   
Sbjct: 61  EESRESILRQAERFNIGL----KPYIEEGRLVVVDALMGEYGDVWSLKELDVEELVSTVI 116

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           E +  +G     +    MS       +   +    +
Sbjct: 117 EAKKYLGPGHARLVVDSMSAFWLDKPAMARKYSYHV 152


>gi|296215342|ref|XP_002754085.1| PREDICTED: DNA repair protein RAD51 homolog 2 [Callithrix jacchus]
          Length = 350

 Score = 54.8 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 77/236 (32%), Gaps = 48/236 (20%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCAFV 101
           +S+    LD AL  GG   G + EI GP   GKT   +                G   ++
Sbjct: 83  LSTTLSALDEAL-HGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYI 141

Query: 102 DAEHALDSIYARKL------------------GVDLKNLLISQPDTGEQALEITDMLVRS 143
           D E A  +    ++                     +        D   Q +E  +  + S
Sbjct: 142 DTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIIS 201

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             V +++IDSVA++  R E +  +  +L     + +++    L          ++  NQ+
Sbjct: 202 KGVKLVIIDSVASVV-RKEFDTQLPGNLKERN-KFLAREASSLKYLAEEFSIPVILTNQI 259

Query: 204 RMK-------------IGVMFGSPETTTG--------GNALKFYSSVRLDIRRVGS 238
                                   E T+G        GN      + RL ++ +GS
Sbjct: 260 TTHLSGALASQADLVSPADDLSLSEGTSGSSCVTAALGNTWSHCVNTRLILQYLGS 315


>gi|294460653|gb|ADE75901.1| unknown [Picea sitchensis]
          Length = 346

 Score = 54.8 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 75/245 (30%), Gaps = 50/245 (20%)

Query: 29  KGAIMQLGSQGS-----IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           KGA +  G++ +       + ++ + +    LD+ LG GG  +  + E+ G    GKT L
Sbjct: 65  KGANLLAGAKTAWDLLCEEKTMKRIVTFCEDLDVILG-GGICRKEVTEVGGVPGIGKTQL 123

Query: 84  ALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKLGVD------------------- 118
            +      Q        GG   ++D E +       ++                      
Sbjct: 124 GIQLAINVQIPVDLGGLGGQAIYIDTEGSFMVERVCQIAKACIEKLKDIPCTSERKVEEC 183

Query: 119 ---------LKNLLISQPDTGEQALEITD---MLVRSGAVDIIVIDSVAALTPRAEIEGD 166
                    L N+   +     + + + +     +       I+I        R + E  
Sbjct: 184 HTKLKVDDFLSNIFYFRACNYTEQIAVINYMDKFIEERDKVKIIIVDSVTFHFRQDFED- 242

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
                  ++ RL+    +KL          +V +NQ+  K            G +     
Sbjct: 243 -----LALRTRLLGGMSQKLMRLAEEYDTAVVLMNQVTTKFSGGSFQLALALGES-WSHA 296

Query: 227 SSVRL 231
            + R+
Sbjct: 297 CTNRV 301


>gi|118587584|ref|ZP_01545008.1| DNA repair protein RadA [Oenococcus oeni ATCC BAA-1163]
 gi|290889823|ref|ZP_06552910.1| hypothetical protein AWRIB429_0300 [Oenococcus oeni AWRIB429]
 gi|118432035|gb|EAV38777.1| DNA repair protein RadA [Oenococcus oeni ATCC BAA-1163]
 gi|290480433|gb|EFD89070.1| hypothetical protein AWRIB429_0300 [Oenococcus oeni AWRIB429]
          Length = 470

 Score = 54.8 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 75/199 (37%), Gaps = 20/199 (10%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
             +    +G   L+  LG GG   G ++ I G    GK+TL L    Q  + GG+  +V 
Sbjct: 68  NELPRTRTGLRELNRVLG-GGIVPGSLILIGGDPGIGKSTLMLQVSGQLAENGGSVLYVS 126

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E + + I  R   + + +   S     E  +E    +V+    D +VIDSV  +    +
Sbjct: 127 GEESDNQIKLRADRLGVGS--DSFIVYPETDMEQIKSIVQQIEPDYLVIDSVQTMQ-EPD 183

Query: 163 IEGDMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
           ++  +G  +        + Q        I+++  I VFI     K G +        G  
Sbjct: 184 LQSPIGSVAQIREVTADLMQ--------IAKTNAITVFIVGHVTKDGSI-------AGPK 228

Query: 222 ALKFYSSVRLDIRRVGSIK 240
            L+      L      + K
Sbjct: 229 ILEHMVDTVLYFEGDANYK 247


>gi|6320207|ref|NP_010287.1| Rad57p [Saccharomyces cerevisiae S288c]
 gi|131784|sp|P25301|RAD57_YEAST RecName: Full=DNA repair protein RAD57
 gi|172345|gb|AAA34950.1| DNA repair protein [Saccharomyces cerevisiae]
 gi|642809|emb|CAA88064.1| Rad57p [Saccharomyces cerevisiae]
 gi|285811028|tpg|DAA11852.1| TPA: Rad57p [Saccharomyces cerevisiae S288c]
          Length = 460

 Score = 54.8 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 63/196 (32%), Gaps = 23/196 (11%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGG 96
            G E  ++  + +D  LG GG     I EI+G  S+GK+ L +      Q        GG
Sbjct: 95  NGPECFTTADVAMDELLG-GGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGG 153

Query: 97  TCAFVDAEHALDSIYA----------RKLGVDLKNLLISQPDTGEQALEITDMLVR---- 142
            C ++  E  L +              KLG+   N+     +       I ++ +     
Sbjct: 154 KCVYITTEGDLPTQRLESMLSSRPAYEKLGITQSNIFTVSCNDLINQEHIINVQLPILLE 213

Query: 143 -SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
            S     +VI    +   R E++              + +   KL          +V  N
Sbjct: 214 RSKGSIKLVIIDSISHHLRVELQNKSFRES-QENKNYLDRMAEKLQILAHDYSLSVVVAN 272

Query: 202 QMRMKIGVMFGSPETT 217
           Q+  K          T
Sbjct: 273 QVGDKPLANSPVAHRT 288


>gi|190405016|gb|EDV08283.1| DNA repair protein RAD57 [Saccharomyces cerevisiae RM11-1a]
 gi|259145249|emb|CAY78513.1| Rad57p [Saccharomyces cerevisiae EC1118]
          Length = 460

 Score = 54.8 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 63/196 (32%), Gaps = 23/196 (11%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGG 96
            G E  ++  + +D  LG GG     I EI+G  S+GK+ L +      Q        GG
Sbjct: 95  NGPECFTTADVAMDELLG-GGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGG 153

Query: 97  TCAFVDAEHALDSIYA----------RKLGVDLKNLLISQPDTGEQALEITDMLVR---- 142
            C ++  E  L +              KLG+   N+     +       I ++ +     
Sbjct: 154 KCVYITTEGDLPTQRLESMLSSRPAYEKLGITQSNIFTVSCNDLINQEHIINVQLPILLE 213

Query: 143 -SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
            S     +VI    +   R E++              + +   KL          +V  N
Sbjct: 214 RSKGSIKLVIIDSISHHLRVELQNKSFRES-QENKNYLDRMAEKLQILAHDYSLSVVVAN 272

Query: 202 QMRMKIGVMFGSPETT 217
           Q+  K          T
Sbjct: 273 QVGDKPLANSPVAHRT 288


>gi|255070105|ref|XP_002507134.1| Rad51 DNA recombinase 3 [Micromonas sp. RCC299]
 gi|226522409|gb|ACO68392.1| Rad51 DNA recombinase 3 [Micromonas sp. RCC299]
          Length = 362

 Score = 54.8 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 87/255 (34%), Gaps = 53/255 (20%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG------GTCAFVDA 103
           + S  LD  LG GG   G I E+ G    GKT   +      Q  G      G+  ++D 
Sbjct: 103 TFSKDLDDLLG-GGVAVGEITELCGCPGIGKTQACMQLCVSVQMPGAFGGYEGSAVYIDT 161

Query: 104 EHALDSIYARK------------------------------LGVDLKNLLISQPDTGEQA 133
           E +  +  A++                              +   L  + + +     + 
Sbjct: 162 EGSFMAERAKEVAQATVSHLVSISQFLPKHLSESGALSQFTVNEILDRVHLFRCHEITEL 221

Query: 134 LEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           L +     M VR+  V ++VIDS+A    R + +         ++  ++++   +L +  
Sbjct: 222 LAVVESLPMYVRAHGVKLVVIDSMAFHF-RQDFKD------MALRTAILAKMTTQLLNLA 274

Query: 191 SRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDI-----RRVGSIKDKDS 244
                 +V +NQ+ +K       +      G +     + R+ +     RR+  +     
Sbjct: 275 KSEHLAVVSVNQITVKPDPASGVARLVPALGESYAHGCTTRVILSWESDRRMAYLFKSPR 334

Query: 245 ITGNQTRVKVVKNKM 259
           +   + +  V    +
Sbjct: 335 LPRGKAKFTVTNGGI 349


>gi|126540732|emb|CAM45950.1| RAD51 homolog (S. cerevisiae) [Mus musculus]
          Length = 236

 Score = 54.8 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 65/183 (35%), Gaps = 24/183 (13%)

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIY----ARKLGVD 118
           I E++G   +GKT +        Q         G   ++D E           A + G+ 
Sbjct: 1   ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLS 60

Query: 119 LKNLLISQPD-------TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
             ++L +             Q L     ++      ++++DS  AL  R +  G    S 
Sbjct: 61  GSDVLDNVAYARGFNTDHQTQLLYQASAMMVESRYALLIVDSATALY-RTDYSGRGELSA 119

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG---VMFGSPETTTGGNALKFYSS 228
             M    +++ LR L          +V  NQ+  ++    +    P+   GGN +   S+
Sbjct: 120 RQMH---LARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHAST 176

Query: 229 VRL 231
            R+
Sbjct: 177 TRV 179


>gi|327311978|ref|YP_004338875.1| putative circadian clock protein KaiC [Thermoproteus uzoniensis
           768-20]
 gi|326948457|gb|AEA13563.1| putative circadian clock protein, KaiC [Thermoproteus uzoniensis
           768-20]
          Length = 291

 Score = 54.8 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 3/100 (3%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+G   LD AL  GG PKG  V   G    GK+ LA+H      K G    +V  
Sbjct: 24  EVERISTGIKELDDAL-EGGIPKGSWVVATGEPGVGKSILAMHFAYAGLKAGDPVVYVTT 82

Query: 104 EHALD--SIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           E       + AR+LG+D            ++  E+  ++V
Sbjct: 83  EQEYRDVVVQARQLGMDFGRYPTYSLGWRKEPEELPQIVV 122


>gi|195446056|ref|XP_002070607.1| GK10943 [Drosophila willistoni]
 gi|194166692|gb|EDW81593.1| GK10943 [Drosophila willistoni]
          Length = 349

 Score = 54.8 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 74/243 (30%), Gaps = 26/243 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGGTC---A 99
             ++ G   LD   G GG     I EI G    GKT L L      Q     GG     A
Sbjct: 87  SRITFGCPALDRCTG-GGIVTRGITEICGASGVGKTQLLLQLAVCVQLPLHLGGLARGVA 145

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F+  E A  S    ++    +     +       + +         ++  V + +  L  
Sbjct: 146 FICTEDAFPSRRMLEISKVFEARYPKENLNFLANVFVEQQFEVKPLLE-CVSNRLPQLMQ 204

Query: 160 RAEIEGDMGESLP---------GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +  I   + +S+            + R M +    L +   +  C ++ INQM       
Sbjct: 205 QHAIGLIIIDSVAAIFRLFTDYDERTRDMRRLANDLLTYADKYNCAVICINQMTSSSATR 264

Query: 211 --FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ--- 265
                 +    G         RL + +V     K    G+Q         M SP      
Sbjct: 265 DDKPMQDIPCLGLQWAHLGRTRLIVSKVP----KQHRLGDQLITVRKLEIMYSPETPNNV 320

Query: 266 VEF 268
            EF
Sbjct: 321 AEF 323


>gi|153952835|ref|YP_001393600.1| DNA repair protein RadA [Clostridium kluyveri DSM 555]
 gi|219853500|ref|YP_002470622.1| hypothetical protein CKR_0157 [Clostridium kluyveri NBRC 12016]
 gi|146345716|gb|EDK32252.1| RadA [Clostridium kluyveri DSM 555]
 gi|219567224|dbj|BAH05208.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 451

 Score = 54.8 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 59/164 (35%), Gaps = 11/164 (6%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + +G + L+  LG GG  +G I  I G    GK+TL L   +          +V  E 
Sbjct: 66  ERLDTGIMELNRVLG-GGIVRGSITLISGAPGIGKSTLLLQAASNIADKYEKVLYVSGEE 124

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           + + I  R  G  L +L  +     E  L+  +  +       +VIDS+  L        
Sbjct: 125 SEEQIKMR--GDRLNSLSNNLYVISETNLDKIESHIEKNKPTFVVIDSIQTLFKEYVSSA 182

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
               S     +  + +        I +S  I  FI     K G 
Sbjct: 183 PGSVSQVRETSNHIMR--------IGKSNSISFFIVAHVTKQGE 218


>gi|326387779|ref|ZP_08209385.1| DNA repair protein RadA [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207825|gb|EGD58636.1| DNA repair protein RadA [Novosphingobium nitrogenifigens DSM 19370]
          Length = 454

 Score = 54.8 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 71/208 (34%), Gaps = 11/208 (5%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G    D ALG GG   G  V + G    GK+TL L   A     GG   ++  E A D 
Sbjct: 72  TGLAEFDRALG-GGLVAGSAVLMGGDPGIGKSTLLLQAAANVASGGGRAIYISGEEASDQ 130

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +  R   + L +  I    +     +I   L    A D +VIDS+  +   +        
Sbjct: 131 VRLRAGRLGLGSAPILLA-SATSVRDILTTLATMPAPDFLVIDSIQTMHSDSIEGAPGTV 189

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           S     A  + +  ++  +++     +    +    ++         +  G     Y  +
Sbjct: 190 SQVRACAFELIRYAKESGAALVLVGHVTKDGSIAGPRVLEHMVDVVMSFEGERSHQYRIL 249

Query: 230 RLDIRRVGSIKD---------KDSITGN 248
           R    R G++ +              GN
Sbjct: 250 RAIKNRFGAVDEIGVFSMQGQGLEEVGN 277


>gi|288940443|ref|YP_003442683.1| putative circadian clock protein, KaiC [Allochromatium vinosum DSM
           180]
 gi|288895815|gb|ADC61651.1| putative circadian clock protein, KaiC [Allochromatium vinosum DSM
           180]
          Length = 487

 Score = 54.8 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 60/158 (37%), Gaps = 5/158 (3%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +S+G   LD  LG  G+ KG  + I G   +GK++LA+       + G  C +  +E 
Sbjct: 256 ERISTGVPTLDAMLGGRGYFKGSSILISGTAGAGKSSLAVAFADSLCRRGERCLYWASEE 315

Query: 106 ALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           + D I      +G DL+               +   L    +  + +   V    P+A I
Sbjct: 316 SSDQILRNMGSIGFDLEPHF---AGGRLHCHAVRPTLHGLESHLMSLHKLVETWRPQALI 372

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
              +           +   L ++   + +S+   +F +
Sbjct: 373 LDPITNFTTIGDPSEVKLMLTRMIDFLKKSEITAIFTS 410



 Score = 42.9 bits (99), Expect = 0.068,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 33 MQLGSQGSIFE--GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
          M + SQ    +   I    +G  GLD  +  GG P+GR   I G    GKT LA+  I +
Sbjct: 1  MPVASQAPHVDLPRIAKCPTGVRGLDE-ITEGGLPRGRPTLICGAAGCGKTLLAMEFIVR 59

Query: 91 SQKT 94
            + 
Sbjct: 60 GARE 63


>gi|38018106|gb|AAR08149.1| RAD51A [Zea mays]
          Length = 198

 Score = 54.8 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 31/83 (37%), Gaps = 7/83 (8%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97
            I  V++GS  LD  L  GG   G I EIYG   SGKT L        Q         G 
Sbjct: 99  EIIQVTTGSRELDKIL-EGGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGK 157

Query: 98  CAFVDAEHALDSIYARKLGVDLK 120
             ++DAE         ++     
Sbjct: 158 ALYIDAEGTFRPQRLLQIADRFG 180


>gi|302390638|ref|YP_003826459.1| DNA repair protein RadA [Thermosediminibacter oceani DSM 16646]
 gi|302201266|gb|ADL08836.1| DNA repair protein RadA [Thermosediminibacter oceani DSM 16646]
          Length = 449

 Score = 54.8 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 8/147 (5%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + +G L LD  LG GG   G +V + G    GK+TL L   A+   TG    +V  E 
Sbjct: 64  ERIKTGLLELDRVLG-GGIVPGSLVLVGGDPGIGKSTLMLQAAAKLGATGKIVLYVTGEE 122

Query: 106 ALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           +   +   A +LG+   +L I   +     L++ +  VR  +  +++IDS+       E+
Sbjct: 123 SAKQVKLRAERLGISGGHLYIVAENN----LDVVEKHVRELSPQVVIIDSIQ-TAYLPEL 177

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSI 190
           E   G      +A L    L K T + 
Sbjct: 178 ESAPGSISQVREATLRLLKLSKETGTA 204


>gi|329914624|ref|ZP_08276140.1| Circadian clock protein KaiC [Oxalobacteraceae bacterium IMCC9480]
 gi|327545094|gb|EGF30389.1| Circadian clock protein KaiC [Oxalobacteraceae bacterium IMCC9480]
          Length = 483

 Score = 54.8 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + +S+G   LD  +G GG P G    + GP  SGKT LA   +A+  + G        E 
Sbjct: 249 KRLSTGVPELDQMMG-GGLPAGYSCLLVGPSGSGKTVLATQFLAEGIRNGEPGVVAAFEK 307

Query: 106 ALDSIYARKLGVDLKNLLISQPDTG------EQALEITDMLVRSGAVDIIVIDSVAAL 157
           + + + + +L + ++   +   +T       ++ L     ++       +VIDS++  
Sbjct: 308 SPNQLLSHQLNLMVERGEVGYINTRTLDLSIDEILHDLVTMITRMHAKRVVIDSLSGF 365


>gi|163791196|ref|ZP_02185613.1| predicted repair protein [Carnobacterium sp. AT7]
 gi|159873527|gb|EDP67614.1| predicted repair protein [Carnobacterium sp. AT7]
          Length = 456

 Score = 54.8 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 75/195 (38%), Gaps = 15/195 (7%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +  + +    L+  LG GG   G +V I G    GK+TL L   AQ    GG   +V  
Sbjct: 68  KVPRIKTQLKELNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSAQLNLAGGKVLYVSG 126

Query: 104 EHALDSIYARKLGVDLKNL-LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           E +   I  R + + +K       P+T    +      +     D ++IDS+  +  + +
Sbjct: 127 EESASQIKMRAIRLGVKGSDFYIYPETD---MGAIRQTIEDLKPDYVIIDSIQTMN-QPD 182

Query: 163 IEGDMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
           I G +G  S        + +        I+++  I +FI     K G + G        +
Sbjct: 183 ITGAIGSVSQVRESTADLLK--------IAKTNNIAIFIVGHVTKEGSIAGPRMLEHMVD 234

Query: 222 ALKFYSSVRLDIRRV 236
            + ++   R    R+
Sbjct: 235 TVLYFEGERHHTFRI 249


>gi|242089345|ref|XP_002440505.1| hypothetical protein SORBIDRAFT_09g002090 [Sorghum bicolor]
 gi|241945790|gb|EES18935.1| hypothetical protein SORBIDRAFT_09g002090 [Sorghum bicolor]
          Length = 364

 Score = 54.8 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 68/183 (37%), Gaps = 30/183 (16%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTGGTCAFVDAEHAL 107
           GLD ALG GG P G++ E+ GP   GKT   L                G   ++D E   
Sbjct: 89  GLDEALG-GGIPMGKLTEVVGPSGIGKTQFCLKLALLAALPEYYGGLDGRVVYIDTEFKF 147

Query: 108 DSIYARKLGVD---------------LKNLLISQPDT---GEQALEITDMLVRSGAVDII 149
            S    ++G                    +L+ +P T     ++LE   + +    V ++
Sbjct: 148 SSRRMIEIGQKSFPQIFRQEGLAQKMAGRILVIRPTTLADFTKSLEEMKVTLLQHDVKLL 207

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           ++DS+AAL      +   G S        +   L  L S    S+  +V  NQ+R +   
Sbjct: 208 IVDSMAALMSLENEKVTAGFSQ-----HPLRWTLSFLKSIAEFSRIPVVVTNQVRSQSND 262

Query: 210 MFG 212
              
Sbjct: 263 DGY 265


>gi|196233858|ref|ZP_03132696.1| putative circadian clock protein, KaiC [Chthoniobacter flavus
           Ellin428]
 gi|196222052|gb|EDY16584.1| putative circadian clock protein, KaiC [Chthoniobacter flavus
           Ellin428]
          Length = 532

 Score = 54.8 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 85/280 (30%), Gaps = 34/280 (12%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE-- 104
            +SSG   LD  L   G+ +G  V + G   +GK+++A H    + + G  C +   E  
Sbjct: 266 RISSGIAELDDMLDGKGYFRGSTVMVTGTAGTGKSSVAAHLAEAACQRGERCMYFSFEES 325

Query: 105 HALDSIYARKLGVDLKN------LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
            A      R +G+ L+       L           LE+  + +            + A  
Sbjct: 326 PAQIVRNMRSVGIHLQPHVDRHLLQFHSARPTMHGLEMHLVKMHKM---------IEAFQ 376

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           P+  I   +            +  L +L   + + +    F++           + E   
Sbjct: 377 PKVVIVDPISNLQSAGSLDDSTSMLVRLIDFLRKKQITAFFVSLASAGSASTEMTDEGM- 435

Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI-- 276
             + +  +  VR                 N+    +    MA   +  EF ++   GI  
Sbjct: 436 -SSLVDTWLLVRDIELGGER---------NRALYVLKSRGMAHSNQVREF-LITSRGIRL 484

Query: 277 -SFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315
                  +            G      G   GQGR  ++ 
Sbjct: 485 RPRVSWALRGAHGFGAAQPGGT--RRGGDSDGQGRVGAQA 522



 Score = 42.1 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 43/298 (14%), Positives = 93/298 (31%), Gaps = 20/298 (6%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-G 95
           S+      ++   +G  G D    +GG P+GR   + G    GK+   +  + +     G
Sbjct: 16  SKPRPLAQLKKAPTGIAGFDEV-TLGGVPEGRPTLVCGSAGCGKSLFGVEFLIRGAVQYG 74

Query: 96  GTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGE----QALEITDMLVRSGAVDII 149
                +  E   D I      LG D++ L+  +    +       EI +          +
Sbjct: 75  EPGVLMTFEETEDDIRKNVASLGFDVEKLIAQKKLYIDFVRVDRAEIDENGEYDLEGIFV 134

Query: 150 VIDSVAALTPRAEIEGDMGESL--PGMQARLMSQALRKLTSSI-SRSKCILVFINQMRMK 206
            +           +  D  E+L        ++   LR+L   +  R+   ++   +    
Sbjct: 135 RLAHAIHTVGAKRVMLDTIETLFSGFSNQAILRSELRRLFGWLKDRNLTTVITGERGDGS 194

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           +         +     L    + ++  RR+  +K + S  G      ++  +  S     
Sbjct: 195 LTRQGLEEYVSDCVILLDHRVTGQISTRRMRVVKYRGSTHGTNEYPFLIDEQGISVLPIT 254

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL-----GQGRENSKIFLRE 319
              + Y    +       +     ++D  G  +      +     G G+ +    L E
Sbjct: 255 ASGMDYPVSNARISS--GIAELDDMLDGKG--YFRGSTVMVTGTAGTGKSSVAAHLAE 308


>gi|269925295|ref|YP_003321918.1| Non-specific serine/threonine protein kinase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269788955|gb|ACZ41096.1| Non-specific serine/threonine protein kinase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 461

 Score = 54.8 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
           ++ +S+G  G D+ LG GG PKG  V + GP   GKT L           G     + A
Sbjct: 1   MDKISTGIPGFDVLLG-GGIPKGSFVLVGGPPGVGKTILVTQMAFHHASQGKKVVMLTA 58


>gi|319956139|ref|YP_004167402.1| DNA repair protein rada [Nitratifractor salsuginis DSM 16511]
 gi|319418543|gb|ADV45653.1| DNA repair protein RadA [Nitratifractor salsuginis DSM 16511]
          Length = 451

 Score = 54.8 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 63/191 (32%), Gaps = 18/191 (9%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E  E   SGS  LD+ LG GG   G +  I G    GK+TL L       +      +V 
Sbjct: 68  EHFERFPSGSRELDLVLG-GGIVPGSLTLIGGAPGIGKSTLLLEIAGNLAQQKRRVLYVS 126

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E +   I  R   +D  +  +         LE     +     D IV+DS+  L     
Sbjct: 127 GEESAGQIKLRANRLDANHPELYLLSEIN--LEKVLTEIEKRDYDFIVVDSIQTLYSDET 184

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
                  +        + +        +++S+ I +FI     K G +        G   
Sbjct: 185 PSAPGSVTQVRTITFELMR--------LAKSRQIPIFIIGHITKEGSI-------AGPRV 229

Query: 223 LKFYSSVRLDI 233
           L+      L  
Sbjct: 230 LEHMVDTVLYF 240


>gi|297695369|ref|XP_002824917.1| PREDICTED: DNA repair protein RAD51 homolog 2-like [Pongo abelii]
          Length = 350

 Score = 54.8 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 63/183 (34%), Gaps = 27/183 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCAFV 101
           +S+    LD AL  GG   G + E+ GP   GKT   +                G   ++
Sbjct: 83  LSTTLSALDEAL-HGGVACGSLTEVTGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYI 141

Query: 102 DAEHALDSIYARKL------------------GVDLKNLLISQPDTGEQALEITDMLVRS 143
           D E A  +    ++                     +        D   Q +E  +  + S
Sbjct: 142 DTESAFSAERLVEIAESRFPSYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIIS 201

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             + ++++DSVA++  R E +  +  +L     + +++    L          ++  NQ+
Sbjct: 202 KGIKLVILDSVASVV-RKEFDTQLQGNLKERN-KFLAREASSLKYLAEEFSIPVILTNQV 259

Query: 204 RMK 206
              
Sbjct: 260 TTH 262


>gi|241612908|ref|XP_002407309.1| RAD51C protein, putative [Ixodes scapularis]
 gi|215502773|gb|EEC12267.1| RAD51C protein, putative [Ixodes scapularis]
          Length = 315

 Score = 54.8 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 59/193 (30%), Gaps = 20/193 (10%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E + +    +D AL  GG  + +I E+ G   SGKT   L   A +  TG +  ++D +
Sbjct: 69  LEPIPTWIPSIDAAL-DGGIARRKITEVTGFPGSGKTQFCLQVAASNHFTGNSTVYIDCK 127

Query: 105 HALDSIYARKL----------------GVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
                    ++                     N       + E+   +   L+      +
Sbjct: 128 GGFTRTRFEQILDGIASKQRSRRREAGVCATPNFCFRPCSSWEELSALLSFLLLLPQQSL 187

Query: 149 IVIDSVAALTPRAEIEG---DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
              D         +        G     ++ +++    RKL    ++    ++  N + M
Sbjct: 188 AANDDHPITLVIVDGFDFHLRHGVDDLPLRRKIVGCMTRKLVDVATKLDVAVLLTNHLSM 247

Query: 206 KIGVMFGSPETTT 218
           K            
Sbjct: 248 KPTSAGSGTLKPA 260


>gi|240282095|gb|EER45598.1| conserved hypothetical protein [Ajellomyces capsulatus H143]
          Length = 423

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 72/253 (28%), Gaps = 65/253 (25%)

Query: 47  VVSSGSLGLDIAL--------------------------GIGGFPKGRIVEIYGPESSGK 80
            VS+G   LD+AL                            GG  +G I E+ GP   GK
Sbjct: 42  AVSTGLPRLDVALALRSGPMPSPLGPRRKNYYGQSHPDASTGGIKRGEITEVIGPRGVGK 101

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD---------------------- 118
           T  A+   A   +      ++D    ++    + +                         
Sbjct: 102 TAFAMGIAASVLQAAQKVVWIDTAGPMNPTRFKGILQRDQHSRSSDDSFDPASGGNKIDE 161

Query: 119 -LKNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTP------------RAE 162
            L  LL   P T    L +              +IVIDS+++L              +A+
Sbjct: 162 FLNQLLYFHPPTIAHLLALISHSPKGFPPPEAGLIVIDSISSLFTSEYRTRLPPGNRKAK 221

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP-ETTTGGN 221
                       + +++      L     R  C++V IN+M  +              G 
Sbjct: 222 FMATAESKNERTRWKIIGNLAMNLKKLAVRLNCVVVVINEMASRFRGKHPPVLHEALSGM 281

Query: 222 ALKFYSSVRLDIR 234
                 + R+ + 
Sbjct: 282 TWDSGVATRIMLC 294


>gi|167629435|ref|YP_001679934.1| DNA repair protein rada [Heliobacterium modesticaldum Ice1]
 gi|167592175|gb|ABZ83923.1| DNA repair protein rada [Heliobacterium modesticaldum Ice1]
          Length = 458

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 56/154 (36%), Gaps = 4/154 (2%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
            Q  +   I  +S+G   LD  LG GG   G +  + G    GK+TL L          G
Sbjct: 63  DQAEVQSNI-RLSTGIAELDRVLG-GGLVVGSLTLLAGDPGIGKSTLLLQAARHMAAASG 120

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
              +V  E ++  I  R   + ++ + +      +  + +    +R      ++IDS+  
Sbjct: 121 PVLYVSGEESVQQIKMRARRLGIEGVDLYLLAETD--IAVVIETIRQRKPGWVIIDSIQT 178

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           +            +     A  + +  + L  ++
Sbjct: 179 MYWDELGSAPGNVAQVRECAAQVMRLAKDLPVAV 212


>gi|260584279|ref|ZP_05852026.1| DNA repair protein RadA [Granulicatella elegans ATCC 700633]
 gi|260157797|gb|EEW92866.1| DNA repair protein RadA [Granulicatella elegans ATCC 700633]
          Length = 458

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 72/198 (36%), Gaps = 22/198 (11%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
               +E ++ V +    LD  LG GG   G +V I G    GK+TL L   +Q QK GG+
Sbjct: 65  DQVAYERVKRVETSMQELDRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSSQLQKAGGS 123

Query: 98  CAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
             +V  E +   +   A +LG+         P+T  QA       V     D ++IDS+ 
Sbjct: 124 VLYVSGEESAAQVKMRAERLGMQADG-FYIYPETDLQA---VVTQVEQLKPDYVIIDSIQ 179

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            +    +  G  G      ++      L KL           +FI     K G +     
Sbjct: 180 TMA-HPQATGIAGSVSQVRESTATLMRLAKLNQIA-------IFIVGHVTKEGAL----- 226

Query: 216 TTTGGNALKFYSSVRLDI 233
              G   L+      L  
Sbjct: 227 --AGPRMLEHMVDTVLYF 242


>gi|18312440|ref|NP_559107.1| hypothetical protein PAE1156 [Pyrobaculum aerophilum str. IM2]
 gi|18159897|gb|AAL63289.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
          Length = 268

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 12/155 (7%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++ +S+G   LD AL  GG P+G  V + G    GK+ L +H      + G    +V  E
Sbjct: 1   MKRISTGVDVLDKAL-EGGIPQGSWVVVTGEPGVGKSILCIHFAYAGLRAGDPVVYVTTE 59

Query: 105 HALDSIYA--RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
                +    ++LG+D     +           I          +I+VID    L    +
Sbjct: 60  QEFRDVMEQAKQLGMDFSRFSVYN---------IAWKKEPEELPEIVVIDIFGLLKVARQ 110

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           +     E  P    R  + ++  L  +I+ +  IL
Sbjct: 111 LTEKSKEESPEKVKRYAALSIDTLIEAINEAYHIL 145


>gi|114704684|ref|ZP_01437592.1| DNA repair protein [Fulvimarina pelagi HTCC2506]
 gi|114539469|gb|EAU42589.1| DNA repair protein [Fulvimarina pelagi HTCC2506]
          Length = 472

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 74/211 (35%), Gaps = 4/211 (1%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           +G   +L       E    ++SG   LD A G GG  +G  + I G    GK+TL +   
Sbjct: 52  RGTPSKLLPLSGEKEEAPRIASGIAELDRATG-GGIVRGSAILIGGDPGIGKSTLLMQAS 110

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           +   + G +  +V  E A+  +  R   +D  +  +          +I   L  +G  D+
Sbjct: 111 SALARKGASVVYVSGEEAVAQVRLRAERLDAADTSVQL-MAETNVEDILATLAANGRPDL 169

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM-KI 207
           ++IDS+  L            +     A+ + +   K + +       +    Q+   ++
Sbjct: 170 VIIDSIQTLWSDLAESAPGTVTQVRTGAQSLIRFA-KASGAAVILVGHVTKEGQIAGPRV 228

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
                       G     Y  +R    R G 
Sbjct: 229 VEHMVDAVLYFEGEGGHHYRILRTVKNRFGP 259


>gi|121601948|ref|YP_988804.1| DNA repair protein RadA [Bartonella bacilliformis KC583]
 gi|120614125|gb|ABM44726.1| DNA repair protein RadA [Bartonella bacilliformis KC583]
          Length = 457

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 78/218 (35%), Gaps = 4/218 (1%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           +   KG ++ L S     +    + SG   LD   G GGF +G  + + G    GK+TL 
Sbjct: 48  KNVRKGRVIALTSLSGDIKDAPRIHSGIAELDRVTG-GGFVRGSALLVGGDPGIGKSTLL 106

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
             T A   + G    +V  E A++ I  R   +   +  +          +I   L    
Sbjct: 107 TQTAAALSQKGHHVIYVSGEEAVEQIRLRAQRLGAADTAVQLAA-ETNVEDILATLNEHK 165

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D+++IDS+  L   A        +   + A+ + +  +K T +       +    Q+ 
Sbjct: 166 KLDMVIIDSIQTLWSDATESAPGTVTQVRISAQEIIRFAKK-TGAAVILVGHVTKDGQIA 224

Query: 205 M-KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
             ++            G     Y  +R    R G   +
Sbjct: 225 GPRVVEHMVDGVLYFEGEGSHHYRILRTVKNRFGPTNE 262


>gi|119719653|ref|YP_920148.1| Rad51-like [Thermofilum pendens Hrk 5]
 gi|119524773|gb|ABL78145.1| Rad51-like protein [Thermofilum pendens Hrk 5]
          Length = 250

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 7/84 (8%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGG 96
            ++E    +S+G   LD  L  GG   G I E  G   +GKT +        Q     GG
Sbjct: 22  RVYEESARISTGVRSLDDLL-EGGIEVGSITEFIGEFGAGKTQICHQLSVMVQLPKDKGG 80

Query: 97  T---CAFVDAEHALDSIYARKLGV 117
                 +VD E         ++  
Sbjct: 81  LNARALYVDTEGTFRPERIVQIAR 104


>gi|327280368|ref|XP_003224924.1| PREDICTED: DNA repair protein RAD51 homolog 2-like [Anolis
           carolinensis]
          Length = 395

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 68/199 (34%), Gaps = 27/199 (13%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI-- 88
            + ++  + ++      + +    LD  L  GG   G I EI GP   GKT   +     
Sbjct: 66  TVYEMKRKRTMNPSTAFLPTTLEDLDKIL-HGGIACGSITEITGPSGCGKTQFCIMMSLL 124

Query: 89  ----AQSQKTGGTCAFVDAEHALDSIYARKL------------------GVDLKNLLISQ 126
                      G   ++D E A  +    ++                     +       
Sbjct: 125 ATLPTSMGGFSGAVIYIDTESAFSAERLIEIAQHRFPHYFASEEKLISMSSSIYLYRELT 184

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
            D   + +E  +  + S  V ++++DS+A++  R E +  +  +L   +  L+++    L
Sbjct: 185 CDGVLKRIESLEEEIISKNVKLVILDSIASVV-RKEFDTKLQGNL-RERTNLLTKEASIL 242

Query: 187 TSSISRSKCILVFINQMRM 205
                     ++  NQ+  
Sbjct: 243 KYLAEEFSIPVILTNQITT 261


>gi|296187236|ref|ZP_06855632.1| DNA repair protein RadA [Clostridium carboxidivorans P7]
 gi|296048107|gb|EFG87545.1| DNA repair protein RadA [Clostridium carboxidivorans P7]
          Length = 340

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 62/164 (37%), Gaps = 11/164 (6%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E   +G   L+  LG GG  KG +  I G    GK+TL L       +  G   +V  E 
Sbjct: 66  ERFDTGITELNRVLG-GGIVKGSLTLISGAPGIGKSTLLLQAANSISRKYGKVLYVSGEE 124

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           + + I  R  G  L+ +        E ++E  +  + +     +++DS+  L  ++    
Sbjct: 125 SEEQIKMR--GDRLEAMSSDLYIVSETSIEKIEEHIENTKPVFVIVDSIQTLFKQSITSA 182

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
               S     +  + +        I ++K I  FI     K G 
Sbjct: 183 PGSVSQVRESSNDIMR--------IGKTKGIPFFIVAHVTKQGE 218


>gi|20091275|ref|NP_617350.1| hypothetical protein MA2444 [Methanosarcina acetivorans C2A]
 gi|19916398|gb|AAM05830.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 240

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 60/167 (35%), Gaps = 12/167 (7%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VS+G   LD  L IGG+P  + + I G   SGKT   +H I +S   G  C  +  E
Sbjct: 1   MERVSTGIEELDRKL-IGGYPVNKAILITGVAGSGKTIFGIHFIYRSCVEGRKCLMIATE 59

Query: 105 HALDSIY--ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
              + I   A+ LG DLK    S   T E   E     +               L    E
Sbjct: 60  ETPEDILYQAQMLGHDLKPYYESGQLTIENIFESRSESIGQTRYGFKPESLDIELPNLME 119

Query: 163 ---------IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
                    +  ++G     +  + +      L   + +  C  + I
Sbjct: 120 FIREGTECLVIDNLGTFALRVSKKKLRDQFDGLAYLVRKKGCTTLLI 166


>gi|187469096|gb|AAI66862.1| Rad51c protein [Rattus norvegicus]
          Length = 345

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 71/225 (31%), Gaps = 46/225 (20%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           + +    LD  LG GG P  +  E+ G    GKT L +      Q         G   F+
Sbjct: 70  IITFCSALDNILG-GGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFI 128

Query: 102 DAEHALDSIYARKLG-----------------------------VDLKNLLISQPDTGEQ 132
           D E +        L                                L ++   +     +
Sbjct: 129 DTEGSFMVDRVVSLATACIQHLHLIAGTHTEEEQQKALKDFTLENILSHIYYFRCHDYTE 188

Query: 133 ALE---ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
            L    +    +   +   +VI    A   R +++         ++ RL++   ++L S 
Sbjct: 189 LLAQVYLLPDFLSDHSKVQLVIIDGIAFPFRHDLDD------LFLRTRLLNGLAQQLISL 242

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
            ++ +  ++  NQM  KI     S     G +     +++RL   
Sbjct: 243 ANKHRLAVILTNQMTTKIDKNQASLVPALGES-WGHAATIRLIFH 286


>gi|213972612|ref|NP_001123249.1| Rad51 homolog c [Rattus norvegicus]
 gi|149053773|gb|EDM05590.1| similar to RAD51L2/RAD51C protein (predicted) [Rattus norvegicus]
          Length = 366

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 71/225 (31%), Gaps = 46/225 (20%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           + +    LD  LG GG P  +  E+ G    GKT L +      Q         G   F+
Sbjct: 91  IITFCSALDNILG-GGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFI 149

Query: 102 DAEHALDSIYARKLG-----------------------------VDLKNLLISQPDTGEQ 132
           D E +        L                                L ++   +     +
Sbjct: 150 DTEGSFMVDRVVSLATACIQHLHLIAGTHTEEEQQKALKDFTLENILSHIYYFRCHDYTE 209

Query: 133 ALE---ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
            L    +    +   +   +VI    A   R +++         ++ RL++   ++L S 
Sbjct: 210 LLAQVYLLPDFLSDHSKVQLVIIDGIAFPFRHDLDD------LFLRTRLLNGLAQQLISL 263

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
            ++ +  ++  NQM  KI     S     G +     +++RL   
Sbjct: 264 ANKHRLAVILTNQMTTKIDKNQASLVPALGES-WGHAATIRLIFH 307


>gi|48477301|ref|YP_023007.1| DNA repair and recombination protein RadB [Picrophilus torridus DSM
           9790]
 gi|48429949|gb|AAT42814.1| DNA repair and recombination protein RadB [Picrophilus torridus DSM
           9790]
          Length = 228

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 85/239 (35%), Gaps = 26/239 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + S    +D  +  GG   G I EIYG   SGKT +++        +G    ++D E 
Sbjct: 11  EKLPSNVKCIDELMN-GGLEPGIITEIYGQGGSGKTNISMIFARSVLLSGKRVIYIDTEG 69

Query: 106 ALDSIY-----ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
                +      + L  ++     S  D  + A+  ++ L++     ++++DS+ +    
Sbjct: 70  FSTERFSQICPDKSLYKNMVLFRASSIDDQDLAIIRSEKLMKEKNYSLLILDSLTSFFRI 129

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
            +            +     + L  L +   R    ++  NQ+   I           GG
Sbjct: 130 EKGND------ISSRMSGFEKELGMLNNIAVRYNIPVLLTNQIYEDID---KKSLEPFGG 180

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFF 279
             +         + ++           N+ R+++VK++         F I+   GIS  
Sbjct: 181 FFIDHSMKAIYKLEKIN----------NKRRIEIVKHRSIKEGLYTTF-IINDSGISCE 228


>gi|46136401|ref|XP_389892.1| hypothetical protein FG09716.1 [Gibberella zeae PH-1]
          Length = 407

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 75/223 (33%), Gaps = 35/223 (15%)

Query: 48  VSSGSLGLDI-ALG-----------IGGFPKGRIVEIYGPESSGKTTL----------AL 85
           VS+G  GLD   LG            GG  +G++ EI+GP  SGKT L          AL
Sbjct: 56  VSTGLEGLDRSLLGPVTIDSQDGTIKGGVQRGQVTEIWGPPGSGKTALGYFYSPDCFQAL 115

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS-- 143
                   T  T A  DA  +     A    +D          T    + +         
Sbjct: 116 QQDRLRTVTKATQARRDASSSTGIEAATAKEIDATQFYQYSCFTLPHLISLVSRPTIKLI 175

Query: 144 -GAVDIIVIDSVAALTPRAEIEGDMGESL---------PGMQARLMSQALRKLTSSISRS 193
                ++VI S +AL   A  + + G S             + + +   +       +  
Sbjct: 176 PTNTSLVVISSFSALVNSALPKSNDGNSTSKGSKGLGPLEKRRQALQSIMSSFHKLAATR 235

Query: 194 KCILVFINQMRMKIGVMFGSPETTT-GGNALKFYSSVRLDIRR 235
            C +V ++Q   K+    G+  TT    N  +   S RL   R
Sbjct: 236 NCAIVVLSQCATKMHSERGATLTTAINANVWEQGVSTRLVTFR 278


>gi|290559905|gb|EFD93227.1| Circadian clock protein KaiC central region [Candidatus
           Parvarchaeum acidophilus ARMAN-5]
          Length = 235

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 69/167 (41%), Gaps = 3/167 (1%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
            +  E IE  ++G  G D  L  GG+PK  ++ + G   +GKTT ++  +    K G  C
Sbjct: 2   DNTKEKIERETTGIPGFDEVLN-GGYPKKSVILVTGNPGAGKTTFSMQFLVDGAKKGEKC 60

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
            +   E ++D I  + L    +  +    + G   L    ++      +++  +  A   
Sbjct: 61  LYFTLEESVDEIITQSLT--FEPKINEYIENGLIKLVTIPLVDYDSLKEVVSSELDAMGA 118

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
            R  I+      +       + +A+ +L++ I    C  +FI +M  
Sbjct: 119 QRIVIDSVTYLQMFFSDIMSIRKAIIELSTIIKARDCTAIFIGEMPY 165


>gi|242788131|ref|XP_002481158.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
 gi|218721305|gb|EED20724.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
          Length = 354

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 68/218 (31%), Gaps = 13/218 (5%)

Query: 48  VSSGSLGLDIAL--------GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT-C 98
           + +G  GLD A+           G P+G I EIYGP   GKT ++L+  A+    G    
Sbjct: 45  LRTGLDGLDDAICAPGTSRPSSSGIPRGSITEIYGPPGVGKTAISLNIAAKVLTAGDDEK 104

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI-TDMLVRSGAVDIIVIDSVAAL 157
            ++D     +     K       +          A EI + + + +              
Sbjct: 105 GYMD--CTSNHHSIAKKSSKKDTISAPFQSYFPNATEIKSRLGLTALQQPPQNQGQGQGQ 162

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
                      + L   +  + S  + K+T   +     ++ +NQ   KI          
Sbjct: 163 GQGKTPAQTQLQWLLNRKWNVTSDMINKITRIAAEHHLAVLLLNQTHTKIKGQPRPTLYP 222

Query: 218 T-GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
              G + +     R+ I R    +           +K 
Sbjct: 223 ALAGGSWENCVQTRVVIYRDHDYQGGGMKVRYAEVMKK 260


>gi|151941994|gb|EDN60350.1| radiation sensitive protein [Saccharomyces cerevisiae YJM789]
          Length = 460

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 67/197 (34%), Gaps = 25/197 (12%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGG 96
            G E  ++  + +D  LG GG     I EI+G  S+GK+ L +      Q        GG
Sbjct: 95  NGPECFTTADVAMDELLG-GGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGG 153

Query: 97  TCAFVDAEHALDSIYA----------RKLGVDLKNLLISQPDTGEQALEITDMLVR---- 142
            C ++  E  L +              KLG+   N+     +       I ++ +     
Sbjct: 154 KCVYITTEGDLPTQRLESMLSSRPAYEKLGITQSNIFTVSCNDLINQEHIINVQLPILLE 213

Query: 143 --SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
              G++ +++IDS++             ES        + +   KL          +V  
Sbjct: 214 RYKGSIKLVIIDSISHHLRVELQNKSFRESQ--ENKNYLDRMAEKLQILAHDYSLSVVVA 271

Query: 201 NQMRMKIGVMFGSPETT 217
           NQ+  K          T
Sbjct: 272 NQVGDKPLANSPVAHRT 288


>gi|116490415|ref|YP_809959.1| DNA repair protein RadA [Oenococcus oeni PSU-1]
 gi|116091140|gb|ABJ56294.1| DNA replication and repair protein RadA [Oenococcus oeni PSU-1]
          Length = 470

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 18/198 (9%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
             +    +G   L+  LG GG   G ++ I G    GK+TL L    Q  + GG+  +V 
Sbjct: 68  NELPRTRTGLRELNRVLG-GGIVPGSLILIGGDPGIGKSTLMLQVSGQLAENGGSVLYVS 126

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E + + I  R   + + +   S     E  +E    +V+    D +VIDSV  +    +
Sbjct: 127 GEESDNQIKLRADRLGVGS--DSFIVYPETDMEQIKSIVQQIEPDYLVIDSVQTMQ-EPD 183

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           ++  +G         + +  ++     I+++  I VFI     K G +        G   
Sbjct: 184 LQSPIG--SVAQIREVTANLMQ-----IAKTNAITVFIVGHVTKDGSI-------AGPKI 229

Query: 223 LKFYSSVRLDIRRVGSIK 240
           L+      L      + K
Sbjct: 230 LEHMVDTVLYFEGDANYK 247


>gi|224051777|ref|XP_002200331.1| PREDICTED: X-ray repair complementing defective repair in Chinese
           hamster cells 3 [Taeniopygia guttata]
          Length = 347

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 55/239 (23%), Positives = 85/239 (35%), Gaps = 43/239 (17%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-- 94
            + +     + +S G   LD  L  GG P   I E+ G  S+GKT + L      Q    
Sbjct: 71  DKDNFPSQHQKLSLGCSVLDNLL-KGGIPLVGITELAGESSAGKTQIGLQLCLCVQYPYK 129

Query: 95  -GGT---CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD--- 147
            GG      ++  E    S   ++L      L    P    Q +   + +    A D   
Sbjct: 130 YGGLESGAVYICTEDVFPSKRLQQLIDQQHKLRADVPAEIIQKIRFGNSIFVEQAADLDT 189

Query: 148 -------------------IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
                              ++VIDS+AAL  R+E     G +   ++AR +     +L S
Sbjct: 190 FQQCITRRLSLLLARGMVRLVVIDSMAALF-RSEF----GPAEAALKARYLQTFGAQLHS 244

Query: 189 SISRSKCILVFINQMRMKIGVM---------FGSPETTTGGNALKFYSSVRLDIRRVGS 238
             +R +  +V INQ+   +             GS  T   G        +RL +RRV  
Sbjct: 245 LSTRFRTPIVCINQVTDAVSESEAAQCSWRAVGSRVTPALGITWSNQLLMRLMVRRVSL 303


>gi|70929429|ref|XP_736777.1| meiotic recombination protein dmc1-like protein, [Plasmodium
           chabaudi chabaudi]
 gi|56511601|emb|CAH76288.1| meiotic recombination protein dmc1-like protein, putative
           [Plasmodium chabaudi chabaudi]
          Length = 215

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 57/150 (38%), Gaps = 21/150 (14%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQ-GSIFEGIEVVSSGSLGLDIALGIGG 63
           K ++ V   K LE A S+I+      ++   G+Q       +  +++GS  LD  LG GG
Sbjct: 70  KGISEVKVDKILEVA-SKIENC----SVFITGNQLVQKRSKVLKITTGSSVLDKTLG-GG 123

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIYARKLG- 116
                I E++G    GKT +       +Q         G   ++D E         K+  
Sbjct: 124 IESMSITELFGENRCGKTQVCHTLAVTAQLPKNMNGGNGKVCYIDTEGTFRPEKICKIAQ 183

Query: 117 -------VDLKNLLISQPDTGEQALEITDM 139
                    L N+L ++  T E   ++   
Sbjct: 184 RFGLHSEDVLDNILYARAFTHEHLYQLLAT 213


>gi|219127959|ref|XP_002184192.1| Rad51 DNA recombination/repair protein [Phaeodactylum tricornutum
           CCAP 1055/1]
 gi|217404423|gb|EEC44370.1| Rad51 DNA recombination/repair protein [Phaeodactylum tricornutum
           CCAP 1055/1]
          Length = 456

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 1/77 (1%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
              F  +  + +G   LD AL  GG   G I E+ GP   GKT LA+     + +    C
Sbjct: 151 EETFSRMRYLPTGLEPLDQAL-RGGVRVGTITELVGPAGVGKTQLAMQLCIMASRYAQGC 209

Query: 99  AFVDAEHALDSIYARKL 115
            +VD E  L     R++
Sbjct: 210 VYVDTEKKLSVARLREI 226


>gi|189210367|ref|XP_001941515.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187977608|gb|EDU44234.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 460

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 11/110 (10%)

Query: 47  VVSSGSLGLDIALG---------IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
            VS+G   LD  L           GG+ +G++ E++GP   GKT   +     + + G  
Sbjct: 34  TVSTGITQLDKVLSPLSLPGHDVSGGYTRGKVTEVFGPSGVGKTAFGIQAAVSALREGQQ 93

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
             +VDA  A   +   ++   L +       +    LE  D        D
Sbjct: 94  VIWVDAACA--PLVKHRVEEILTSYADKIQPSYAGKLEHQDEPDPDSPSD 141


>gi|47087371|ref|NP_998577.1| DNA repair protein RAD51 homolog 2 [Danio rerio]
 gi|30354420|gb|AAH52122.1| Zgc:56581 [Danio rerio]
          Length = 373

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 68/193 (35%), Gaps = 27/193 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH---TIAQSQKTGGT---CAF 100
             S+    LD  L  GG P+G + E+ GP   GKT L +         +  GG      +
Sbjct: 78  CFSTSLPALDRLL-HGGLPRGALTEVTGPSGCGKTQLCMMLSVLATLPKSLGGLDSGVIY 136

Query: 101 VDAEHALDSIYAR------------------KLGVDLKNLLISQPDTGEQALEITDMLVR 142
           +D E A  +                      ++   +            + LE  +  + 
Sbjct: 137 IDTESAFSAERLVEMAQSRFPEFFSVKERLLEMAARVHLFRELTCQDVLKRLERLEEDII 196

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           +    ++++DSVA++  R E +  +  +L   ++  + Q    L          +V  NQ
Sbjct: 197 ACRAGLVILDSVASVV-RKEFDTSLPGNL-THRSNFLGQEAAVLKYLSQEFCIPVVLTNQ 254

Query: 203 MRMKIGVMFGSPE 215
           +   +G     P+
Sbjct: 255 ITTHVGEKLHCPQ 267


>gi|86159366|ref|YP_466151.1| putative circadian clock protein, KaiC [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775877|gb|ABC82714.1| putative circadian clock protein, KaiC [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 496

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 3/89 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +G  GLD  LG GGFP+ RI  I G   +GKTTLAL  + +  + G +C ++    + +
Sbjct: 12  PTGVAGLDDVLG-GGFPRRRIHLIQGSPGAGKTTLALQFLMEGVRQGESCLYIAMSESRE 70

Query: 109 SIYARKL--GVDLKNLLISQPDTGEQALE 135
            + +     G DL  + + +    +   E
Sbjct: 71  EVESVAASHGWDLGGITVFEASELDGEEE 99



 Score = 44.1 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF--VDA 103
           E  SSG   LD  LG GG  +G    I GP  +GK++LA   +  +   G   A    D 
Sbjct: 247 EQCSSGLEPLDRMLG-GGLDRGTSTLIVGPAGAGKSSLATQFVHAAAGRGEAAALFAFDE 305

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQ 132
             A      R +G+DL   +        Q
Sbjct: 306 PRATLLARTRAIGLDLTPFVEEGSVHITQ 334


>gi|315041895|ref|XP_003170324.1| hypothetical protein MGYG_07566 [Arthroderma gypseum CBS 118893]
 gi|311345358|gb|EFR04561.1| hypothetical protein MGYG_07566 [Arthroderma gypseum CBS 118893]
          Length = 493

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 74/201 (36%), Gaps = 32/201 (15%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL------- 115
           G  +G I E+ GP  SGKT+LA+ T   + K G +  ++D    +      K+       
Sbjct: 111 GIRRGEITELSGPRGSGKTSLAMTTAVNALKRGESVVWIDTAGPICMSRFEKMLLKDSTP 170

Query: 116 ---GVDLKNLLISQPDTGEQALEITDMLVRSGAV---DIIVIDSVAALT---PRAEIEGD 166
                 L+NLL  QP T    L +T   +         +IV+DS++ L     R+++   
Sbjct: 171 SEVQDLLQNLLHLQPTTLAHLLALTSYPMSDFPPPNTGLIVLDSISCLFGSEFRSKLPSR 230

Query: 167 MGESLP-------GMQARLMSQALRKLTS--------SISRSKCILVFINQMRMKIGVMF 211
           + ++           +    S+   KL            SR  C ++ +N+M  +     
Sbjct: 231 LNKARDLNSAAASRDKDSQESKLWWKLIGTLSSNLNALASRLDCAVIVVNEMVTRFRSGQ 290

Query: 212 GSP-ETTTGGNALKFYSSVRL 231
                    G       + R+
Sbjct: 291 KPMLHVAISGYTWDTSVATRI 311


>gi|11497963|ref|NP_069187.1| hypothetical protein AF0351 [Archaeoglobus fulgidus DSM 4304]
 gi|2650282|gb|AAB90883.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 226

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 64/157 (40%), Gaps = 13/157 (8%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G  GLD  LG GG P+G IV + G   +GKTTL LH I +  K G  C  +  +   +S
Sbjct: 4   TGIEGLDAILG-GGIPEGHIVAVVGQYGTGKTTLGLHFIYEGLKNGEACMIISFDEDEES 62

Query: 110 IYARKLGVDLK-----------NLLISQPDTGEQALEI-TDMLVRSGAVDIIVIDSVAAL 157
           I      V +             L  S+     + LE     +VRS  V  +++DS++ L
Sbjct: 63  IIGDAKSVGMDLTAFGDKVHIVRLEASEVKKSLEKLESDLPEIVRSLGVSRMLVDSISVL 122

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
               +  G         +    +     +TS   + +
Sbjct: 123 ETLFDDAGRYSMLAAFRKMLKENGITAIITSEADKYQ 159


>gi|225454007|ref|XP_002280748.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296089196|emb|CBI38899.3| unnamed protein product [Vitis vinifera]
          Length = 346

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 71/226 (31%), Gaps = 45/226 (19%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGG 96
           E ++ +++  + LD  LG GG     + EI G    GKT L +      Q        GG
Sbjct: 83  ESLKCITTSCVDLDDILG-GGIKCKEVTEIGGVPGIGKTQLGIQLAVNVQIPVNYGGLGG 141

Query: 97  TCAFVDAEHALDSIYARKLGVD----------------------------LKNLLISQPD 128
              ++D E +     + ++                               L+N+   +  
Sbjct: 142 KAIYIDTEGSFMLERSLQIAEACIEDMSGNSDFLQKDFQSCQVKAQPKDFLQNIFYFRVC 201

Query: 129 TGEQALEITD---MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           +  + + + +     +       +VI        R + +         ++ RL+S    K
Sbjct: 202 SYTEQIAMINYLDKFISEHKDVNVVIIDSVTFHFRQDFDD------LALRTRLLSGMALK 255

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
           L     +    +V +NQ+  K            G +      + R+
Sbjct: 256 LMKLAKKFSLAVVLLNQVTTKHTEGSFQLTLALGDS-WSHSCTNRV 300


>gi|224028841|gb|ACN33496.1| unknown [Zea mays]
          Length = 270

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 76/218 (34%), Gaps = 33/218 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +++GS  L+  LG GG     + EI G    GKT L +      Q        GG   ++
Sbjct: 11  ITTGSGDLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVECGGLGGKAVYI 69

Query: 102 DAEHALDSIYARKLGVD-LKNLLISQPDTGEQA-------------LEITDMLVRSGAVD 147
           D E +       ++    ++++L   P + E++              +I    + S    
Sbjct: 70  DTEGSFMVERVYQIAEGCIRDILEHFPHSHEKSSSVQKQLQPERFLADIYYFRICSYTEQ 129

Query: 148 IIVIDSV-AALTPRAEIEGDMGES----------LPGMQARLMSQALRKLTSSISRSKCI 196
           I VI+ +   L    ++   + +S             ++ R++S    KL          
Sbjct: 130 IAVINYMEKFLREHKDVRIVIIDSVTFHFRQDFEDLALRTRVLSGLSLKLMKIAKTYNLA 189

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
           +V +NQ+  K            G +      + RL + 
Sbjct: 190 VVLLNQVTTKFTEGSFQLTLALGDS-WSHSCTNRLILH 226


>gi|226494109|ref|NP_001150457.1| DNA repair protein RAD51 [Zea mays]
 gi|195639406|gb|ACG39171.1| DNA repair protein RAD51 [Zea mays]
 gi|224030343|gb|ACN34247.1| unknown [Zea mays]
          Length = 294

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 76/218 (34%), Gaps = 33/218 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +++GS  L+  LG GG     + EI G    GKT L +      Q        GG   ++
Sbjct: 35  ITTGSGDLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVECGGLGGKAVYI 93

Query: 102 DAEHALDSIYARKLGVD-LKNLLISQPDTGEQA-------------LEITDMLVRSGAVD 147
           D E +       ++    ++++L   P + E++              +I    + S    
Sbjct: 94  DTEGSFMVERVYQIAEGCIRDILEHFPHSHEKSSSVQKQLQPERFLADIYYFRICSYTEQ 153

Query: 148 IIVIDSV-AALTPRAEIEGDMGES----------LPGMQARLMSQALRKLTSSISRSKCI 196
           I VI+ +   L    ++   + +S             ++ R++S    KL          
Sbjct: 154 IAVINYMEKFLREHKDVRIVIIDSVTFHFRQDFEDLALRTRVLSGLSLKLMKIAKTYNLA 213

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
           +V +NQ+  K            G +      + RL + 
Sbjct: 214 VVLLNQVTTKFTEGSFQLTLALGDS-WSHSCTNRLILH 250


>gi|255530041|ref|YP_003090413.1| DNA repair protein RadA [Pedobacter heparinus DSM 2366]
 gi|255343025|gb|ACU02351.1| DNA repair protein RadA [Pedobacter heparinus DSM 2366]
          Length = 458

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 64/175 (36%), Gaps = 16/175 (9%)

Query: 37  SQGSIFEGIEVVS-----SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           S+ +  + I+ ++     +G   LD  LG GG   G ++ I G    GK+TL L      
Sbjct: 58  SKPNKVDNIQSITEERILTGDTELDRVLG-GGLVAGSVILIGGEPGIGKSTLMLQLALNI 116

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
              G    +V  E +   I  R   + ++ +      T      I    +     DI+V+
Sbjct: 117 S--GKKILYVSGEESEQQIKMRAERITVQPMADCYILTETSTQNI-FKQIEELEPDIVVV 173

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           DS+  L           ES PG  ++ + +   +L      +   +  I  +   
Sbjct: 174 DSIQTLHS------AHIESTPGSVSQ-VRECTAELLRFAKETDTPVFLIGHITKD 221


>gi|209946406|gb|ACI97434.1| spindle B [Drosophila melanogaster]
          Length = 341

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 78/238 (32%), Gaps = 25/238 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCA 99
             VS G   LD   G GG     I E+ G    GKT L L      Q        G   A
Sbjct: 86  SRVSFGCSALDRCTG-GGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVA 144

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           ++  E +  +    ++    +             + + +  + +  +   VI+ +  L  
Sbjct: 145 YICTESSFPARRLLQMSKACEKRHPEMELNFLGNIFVXN-HIEAEPLLACVINRIPRLMQ 203

Query: 160 RAEIEGDMGESLPG---------MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +  I   + +S+            +AR M +    L S   +  C +V +NQ+  + G  
Sbjct: 204 QHGIGLIIIDSVAAIFRLYNDYLERARHMRRLADALLSYADKYNCAVVCVNQVATRDG-- 261

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
               E    G         RL + RV     K    G+Q         + SP    +F
Sbjct: 262 --QDEIPCLGLQWAHLGRTRLRVSRVP----KQHRMGDQLITVRKLEILYSPETPNDF 313


>gi|254487922|ref|ZP_05101127.1| DNA repair protein RadA [Roseobacter sp. GAI101]
 gi|214044791|gb|EEB85429.1| DNA repair protein RadA [Roseobacter sp. GAI101]
          Length = 455

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 80/254 (31%), Gaps = 29/254 (11%)

Query: 25  RVYG--KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           +  G  +G+ M L    +         SG   LD  LG GG      + + G    GK+T
Sbjct: 46  KSLGTKRGSAMVLTDLSTKEAPPPRSQSGIAELDRVLG-GGLVAASAILVGGDPGIGKST 104

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L   A   ++G    +V  E A   +  R   + L +  +         L      + 
Sbjct: 105 LLLQAAAHFARSGLKTIYVSGEEASAQVRMRAQRLGLADAPVKLAAETN--LRDILTTLE 162

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           +   D+ +IDS+  +            S     A        +LTS   R+   ++ +  
Sbjct: 163 AERPDLAIIDSIQTMWADNVESAPGSVSQVRASAH-------ELTSFAKRTGVSVILVGH 215

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +     +         G   ++      L               G+Q R+         P
Sbjct: 216 VTKDGQI--------AGPRVVEHMVDTVLYFEGER---------GHQFRILRAVKNRFGP 258

Query: 263 FKQVEFDIMYGEGI 276
             ++    M G+G+
Sbjct: 259 SDEIGVFEMTGQGL 272


>gi|256268991|gb|EEU04334.1| Rad57p [Saccharomyces cerevisiae JAY291]
          Length = 460

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 64/196 (32%), Gaps = 23/196 (11%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGG 96
            G E  ++  + +D  LG GG     I EI+G  S+GK+ L +      Q        GG
Sbjct: 95  NGPECFTTADVAMDELLG-GGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGG 153

Query: 97  TCAFVDAEHALDSIYA----------RKLGVDLKNLLISQPDTGEQALEITDMLVR---- 142
            C ++  E  L +              KLG+   N+     +       I ++ +     
Sbjct: 154 KCVYITTEGDLPTQRLESMLSSRPAYEKLGITQSNIFTVSCNDLINQEHIINVQLPILLE 213

Query: 143 -SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
            S     +VI    +   R E++              + +   KL          +V  N
Sbjct: 214 RSKGSIKLVIIDSISHHLRVELQNKSFRES-QENKNYLDRMAEKLQILAHDYSLSVVVAN 272

Query: 202 QMRMKIGVMFGSPETT 217
           Q+  K+         T
Sbjct: 273 QVGDKLLANSPVAHRT 288


>gi|312898315|ref|ZP_07757705.1| DNA repair protein RadA [Megasphaera micronuciformis F0359]
 gi|310620234|gb|EFQ03804.1| DNA repair protein RadA [Megasphaera micronuciformis F0359]
          Length = 455

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 69/169 (40%), Gaps = 14/169 (8%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           +    E +  + +G   LD  LG GG   G ++ + G    GK+TL L T A   +  GT
Sbjct: 61  KSVRMELMSRLQTGIDELDTVLG-GGIVPGALILLSGDPGIGKSTLVLQTAAAVSREAGT 119

Query: 98  CAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
             +   E +   I  R  +L + + +L +      +  L+      +S  V +++IDS+ 
Sbjct: 120 VLYASGEESAGQIKMRADRLNIKVDDLFV----QADTYLDSVLKEAKSRNVGLLIIDSIQ 175

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +   ++ +G  G          + +   KL +    +   ++ I  + 
Sbjct: 176 TMYT-SDCDGAPGSQT------QVREGTNKLMNFAKSTGIPVIVIGHVT 217


>gi|237809335|ref|YP_002893775.1| DNA repair protein RadA [Tolumonas auensis DSM 9187]
 gi|237501596|gb|ACQ94189.1| DNA repair protein RadA [Tolumonas auensis DSM 9187]
          Length = 454

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 74/200 (37%), Gaps = 8/200 (4%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  +SSG   LD  LG GG   G  + I G   +GK+TL L T+        T  +V  
Sbjct: 70  EIPRISSGYKELDRVLG-GGIVPGSAMLIGGHPGAGKSTLLLQTMCLLADR-MTVLYVTG 127

Query: 104 EHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           E +L  +  R  +LG+    L +    + EQ   +           ++VIDS+  +    
Sbjct: 128 EESLQQVAMRAHRLGLPNDKLRMLAETSVEQICHLA----LQEKPAVMVIDSIQVMHVAD 183

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
                   S     A  +++  ++   +I     +         K+            G+
Sbjct: 184 VSSSPGSVSQVRESAAHLTRFAKQHQVAIFMVGHVTKDGALAGPKVLEHCVDCSVLLEGD 243

Query: 222 ALKFYSSVRLDIRRVGSIKD 241
           A   Y ++R    R G+I +
Sbjct: 244 ADSRYRTLRCQKNRFGAINE 263


>gi|297618887|ref|YP_003706992.1| AAA ATPase [Methanococcus voltae A3]
 gi|297377864|gb|ADI36019.1| AAA ATPase [Methanococcus voltae A3]
          Length = 280

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 69/152 (45%), Gaps = 8/152 (5%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL-----G 116
           G   K  I +IYGP  SGKT + +  + +  K      ++D E +L +   +++      
Sbjct: 8   GEIEKKTITQIYGPPGSGKTNICIIAMIKFAKNNQKVIYIDTEGSLSTERVKQICPQDSE 67

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
              KN L+ +P T E+   + + L     + +I++D +++L  R E+  ++         
Sbjct: 68  GIFKNTLLCEPYTFEEQCNVIESLEAVENIGLIIVDGISSLY-RLELSNNVF--HNTELN 124

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           R +++ +  L     ++   ++  NQ +  IG
Sbjct: 125 RNLARQIHILNKIAKKNDTAVLLTNQAKDSIG 156


>gi|149635547|ref|XP_001509367.1| PREDICTED: similar to Rad51C [Ornithorhynchus anatinus]
          Length = 364

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 69/225 (30%), Gaps = 46/225 (20%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           + +    LD  LG GG P  +  EI G    GKT L +      Q         G   F+
Sbjct: 91  IITFCSALDNILG-GGIPLTKTTEICGGPGVGKTQLCIQLAVDVQIPECFGGVAGEAVFI 149

Query: 102 DAEHALDSIYARK-----------------------------LGVDLKNLLISQPDTGEQ 132
           D E +                                     L   L ++   +     +
Sbjct: 150 DTEGSFLVDRVEAIATACIQHLQLVAESHLEEEQQKALENFSLESILAHIYYFRCHDYTE 209

Query: 133 ALE---ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
            L    +    +   +   +V+    A   R + +         ++ RL++   ++L S 
Sbjct: 210 LLAQIYLLSDFLSEHSKVRLVVVDGIAFPFRHDFDD------LSLRTRLLNGLAQQLISL 263

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
            +  K  ++  NQM  KI           G +     +++R+ + 
Sbjct: 264 ANDHKLAVILTNQMTTKIDQNQSILVPALGDS-WGHAATIRIILH 307


>gi|254447309|ref|ZP_05060776.1| DNA repair protein RadA [gamma proteobacterium HTCC5015]
 gi|198263448|gb|EDY87726.1| DNA repair protein RadA [gamma proteobacterium HTCC5015]
          Length = 453

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 68/193 (35%), Gaps = 4/193 (2%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +G   LD  LG GG  +G +  + G    GK+TL L  +A     G  C +V  E +L 
Sbjct: 73  PTGISELDRVLG-GGVVEGSVTLLGGDPGIGKSTLLLQALASL-TQGDNCLYVSGEESLH 130

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            I  R   + ++   +      +    I      S    ++VIDS+  +           
Sbjct: 131 QISMRAQRLAIQAPSLKLVAETQVERIIDLA--SSERPSVVVIDSIQTMHTELLQSAPGS 188

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
            +     A  + +  ++  +++     +         ++         +  G+    Y  
Sbjct: 189 VAQVRESAAQLVRFAKQSNTALLLVGHVTKDGQLAGPRVLEHMVDSVLSFEGDTASRYRV 248

Query: 229 VRLDIRRVGSIKD 241
           VR    R G++ +
Sbjct: 249 VRAIKNRFGAVNE 261


>gi|301763292|ref|XP_002917067.1| PREDICTED: DNA repair protein RAD51 homolog 2-like [Ailuropoda
           melanoleuca]
          Length = 344

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 74/209 (35%), Gaps = 33/209 (15%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           Q+Q  YG    M++ +  S+      +++    LD AL  GG   G + EI GP   GKT
Sbjct: 63  QMQTAYG----MKMRTSASLSPA--FLATTLSALDEAL-HGGVACGSLTEITGPPGCGKT 115

Query: 82  TLALHTI------AQSQKTGGTCAFVDAEHALDSIYARKL------------------GV 117
              +                G   ++D E A  +    ++                    
Sbjct: 116 QFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSS 175

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
            +        D   + ++  +  + S  V +++IDSVA++  R E +  +  +    + +
Sbjct: 176 KVHLYRELSCDEVLRRIDSLEEEIISKGVKLVIIDSVASVV-RKEFDTQLQGN-MRERNK 233

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMK 206
            +++    L          ++  NQ+   
Sbjct: 234 FLAREAASLKYLAEEFSIPVILTNQITTH 262


>gi|160895374|ref|ZP_02076144.1| hypothetical protein CLOL250_02932 [Clostridium sp. L2-50]
 gi|156862945|gb|EDO56376.1| hypothetical protein CLOL250_02932 [Clostridium sp. L2-50]
          Length = 450

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 52/253 (20%), Positives = 91/253 (35%), Gaps = 31/253 (12%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
             S+G   L+  LG GG   G +V + G    GK+T+ L         G    +V  E +
Sbjct: 67  RFSTGLEELNRVLG-GGIVNGSLVLVGGDPGIGKSTILLQMCRNLSADGHKILYVSGEES 125

Query: 107 LDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           L  I   A ++G   K++L+   +     LE  +  V+     +IVIDS+  +       
Sbjct: 126 LSQIKMRAERIGTFQKDMLLLCVNN----LEDVEEYVKKDRPKVIVIDSIQTIVVEDIAS 181

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
                S        + Q        +++   I +FI     K G +        G   L+
Sbjct: 182 APGSVSQVKEVTARLMQ--------MAKQMDIAIFIVGHVTKEGTV-------AGPRNLE 226

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
                 L         + D   G +  ++ VKN+  S  +   F++    G+S       
Sbjct: 227 HMVDTVLYF-------EGDRNAGFRI-LRAVKNRFGSTNEIGVFEM-LETGLSEVNNPSK 277

Query: 285 LGVKASIVDKSGA 297
           + +    +  SG+
Sbjct: 278 VMLAGRPLQTSGS 290


>gi|311267725|ref|XP_003131708.1| PREDICTED: DNA repair protein RAD51 homolog 3-like [Sus scrofa]
          Length = 315

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 70/225 (31%), Gaps = 46/225 (20%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           + +    LD  LG GG P  +I EI G    GKT L +      Q         G   F+
Sbjct: 91  IITFCSALDNILG-GGVPLTKITEICGAPGVGKTQLCMQLAVDVQIPECFGGVEGEAVFI 149

Query: 102 DAEHALDSIYARKLG-----------------------------VDLKNLLISQPDTGEQ 132
           D E +        L                                L ++   +     +
Sbjct: 150 DTEGSFMVNRVVDLATACIQHLHLIAGTHMEEEQPKALQDFTLENILSHIYYFRCRDYTE 209

Query: 133 ALE---ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
            L    +    +   +   +VI    A   R E++         ++ RL++   +++ S 
Sbjct: 210 LLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHELDD------LSLRTRLLNGLAQQMISL 263

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
            +  +  ++  NQM  KI           G +     +++RL   
Sbjct: 264 ANNHRLAVILTNQMTTKIDKNEALLVPALGES-WGHAATIRLIFH 307


>gi|308273426|emb|CBX30028.1| DNA repair protein radA homolog [uncultured Desulfobacterium sp.]
          Length = 455

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 5/130 (3%)

Query: 31  AIMQ--LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           ++M+  +      FEG E + +G    D  LG GG   G ++ I G    GK+TL L T+
Sbjct: 53  SVMREPVCIDDIEFEGEERIQTGIGEFDRVLG-GGIVPGTMILIGGDPGIGKSTLMLQTL 111

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
               + G    +V  E ++  I  R   +  K+  +      +  +E+   +V S   D+
Sbjct: 112 CSLAEKGLKVLYVSGEESVRQISLRSRRLYAKSPGLLVVSEID--VEVILSMVGSVKPDV 169

Query: 149 IVIDSVAALT 158
           +VIDS+  + 
Sbjct: 170 LVIDSIQTMF 179


>gi|126459324|ref|YP_001055602.1| hypothetical protein Pcal_0710 [Pyrobaculum calidifontis JCM 11548]
 gi|126249045|gb|ABO08136.1| conserved hypothetical protein [Pyrobaculum calidifontis JCM 11548]
          Length = 277

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 12/153 (7%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
           G+  VS G   LD AL  GG P+G  V + G    GK+ L +H      + G    +V  
Sbjct: 10  GVRRVSIGVEALDKAL-EGGIPQGSWVVVTGEPGVGKSILCIHFAYAGLRAGDPVVYVTT 68

Query: 104 EHALDSIYA--RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           E     +    R+LG+DL    +           I          +I+V+D    L    
Sbjct: 69  EQEFRDVMEQARQLGMDLSQFSVFN---------IAWRKEPEELPEIVVVDIFGLLKVAR 119

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           ++     E  P    R  + ++  L  +I+ + 
Sbjct: 120 QLTERAREESPEKVRRYAALSIDTLIEAINEAY 152


>gi|171184701|ref|YP_001793620.1| putative circadian clock protein, KaiC [Thermoproteus neutrophilus
           V24Sta]
 gi|170933913|gb|ACB39174.1| putative circadian clock protein, KaiC [Thermoproteus neutrophilus
           V24Sta]
          Length = 267

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 54/150 (36%), Gaps = 8/150 (5%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +  + +G   LD AL  GG P+G  V + G    GK+ L +H      ++G    +V  E
Sbjct: 1   MRRIPTGIEVLDKAL-EGGVPQGSWVVVTGEPGVGKSILCIHFAYAGLRSGDPVVYVTTE 59

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
                +  +   + +         +      I          +I+VID    L    ++ 
Sbjct: 60  QEFRDVMEQARQLGMD-------FSQFSVYNIAWKKEPEELPEIVVIDIFGLLKVARQLT 112

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSK 194
               E  P    R  + ++  L  +I+ + 
Sbjct: 113 EKAREESPDKVRRYAALSIDTLIEAINEAY 142


>gi|319408302|emb|CBI81955.1| DNA repair protein [Bartonella schoenbuchensis R1]
          Length = 458

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 61/156 (39%), Gaps = 2/156 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G I+ L S     E    + SG   LD   G GGF +G  + + G    GK+TL   T A
Sbjct: 53  GRIITLTSLSGDLEDAPRIHSGISELDRVTG-GGFVRGSALLVGGDPGIGKSTLLTQTAA 111

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
              + G    +V  E A+  I  R   +   +  +          +I   L     +D++
Sbjct: 112 ALSRKGYNVIYVSGEEAVAQIRLRAQRLGAHDTTVKLAA-ETNVEDILTTLNAHKKLDLV 170

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           +IDS+  L   A        +   + A+ + +  +K
Sbjct: 171 IIDSIQTLWSDAADSAPGSVTQVRISAQAIIRFAKK 206


>gi|307244727|ref|ZP_07526829.1| DNA repair protein RadA [Peptostreptococcus stomatis DSM 17678]
 gi|306491904|gb|EFM63955.1| DNA repair protein RadA [Peptostreptococcus stomatis DSM 17678]
          Length = 459

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 62/165 (37%), Gaps = 13/165 (7%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E  S+    LD  LG GG   G +V + G    GK+TL L       +TG    ++  E 
Sbjct: 71  ERFSTSIPELDRVLG-GGVIPGSLVLVGGDPGIGKSTLLLQVSNNVAETGKKVLYISGEE 129

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +   I  R   + + +   +     E  L   ++ +     D++++DS+  +    EI  
Sbjct: 130 SESQIKMRAKRLKVSS--DNLYIYTENNLAAIELQIAEVEPDMVIVDSIQTMIS-PEINS 186

Query: 166 DMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
             G  S          +        IS+SK I  FI     K G 
Sbjct: 187 APGTISQIKEGTSKFMK--------ISKSKSISTFIVGHVTKEGA 223


>gi|256074671|ref|XP_002573647.1| TRAD-d4 [Schistosoma mansoni]
 gi|238658831|emb|CAZ29879.1| TRAD-d4 , putative [Schistosoma mansoni]
          Length = 256

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 80/238 (33%), Gaps = 16/238 (6%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           GA M L    S +      S+G   LD  L  GG   G I EI G  ++GKT   L   A
Sbjct: 11  GAQMLLEESKSSY----CFSTGIENLDNLLN-GGLRTGEITEIIGKSATGKTQFCLSVCA 65

Query: 90  QSQKTGGTC--AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
              +   T    ++D +    +   R+     +N   S   T     +  +  +     D
Sbjct: 66  SVLRNYKTVSIVYLDTKGDFIADRLREYLKK-QNFKHSNVPTNVATKDEYETFITRNNDD 124

Query: 148 IIVIDSVA-ALTPRAEIEGDMGESLPGMQAR--LMSQALRKLTSSISRSKCILVFINQMR 204
              +  +   L P     G + +SL  ++       + L  ++S           I    
Sbjct: 125 KQYLTRIRCCLVP---TFGHLIDSLITIRMHIDKAQRHLHNISSPTEEFFSNCKLIIIDS 181

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           + I  +           A+   + +  +++R+ ++     +  N  + +   +    P
Sbjct: 182 LTIPFLTCMSALP--QLAISQLALIISELQRISTLNHCAILVTNHAKSQFTSHTSLLP 237


>gi|194364808|ref|YP_002027418.1| Non-specific serine/threonine protein kinase [Stenotrophomonas
           maltophilia R551-3]
 gi|194347612|gb|ACF50735.1| Non-specific serine/threonine protein kinase [Stenotrophomonas
           maltophilia R551-3]
          Length = 498

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 75/213 (35%), Gaps = 18/213 (8%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VSSG   +D  LG GG  +G    + GP  SGKT +AL  +  + + G  C   + +  +
Sbjct: 250 VSSGVDEIDRLLG-GGPLRGTSTLLTGPAGSGKTNVALQYVWAACERGERCCIFEFDERI 308

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA----EI 163
            ++ AR   +D+              LEI  M     +      +    +  R      I
Sbjct: 309 GTLLARASALDIDL----DKHLHSGLLEILQMDPAEVSPGEFSWNLRKVVEQRNCSVLVI 364

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           +   G      Q + +   L ++ S +++       IN               +TG   +
Sbjct: 365 DSLNGYVTAMPQEKQLMLQLHEMLSYLNQKGVATFLIN------PQHGLVGTMSTGSLNV 418

Query: 224 KFYSSVRLDIR---RVGSIKDKDSITGNQTRVK 253
            + +   +  R     G I+   S+  N+    
Sbjct: 419 SYIADAVVLFRFFEAKGRIRKAISVIKNRGGAH 451



 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G  GLD  LG GG P+ R+  + GP  SGKTTL+L  + +  + G  C ++      + 
Sbjct: 9   TGVEGLDSILG-GGLPQARLYLLEGPPGSGKTTLSLQFLLEGLRRGERCLYITLSETAEE 67

Query: 110 IYARKL--GVDLKNLL 123
           +       G  L  L 
Sbjct: 68  LREVAAAHGWSLDGLH 83


>gi|262195673|ref|YP_003266882.1| circadian clock protein, KaiC [Haliangium ochraceum DSM 14365]
 gi|262079020|gb|ACY14989.1| putative circadian clock protein, KaiC [Haliangium ochraceum DSM
           14365]
          Length = 478

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 18/202 (8%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E+  SG   LD  L  GGF +G +  + GP   GKTTLA   + ++   G        E 
Sbjct: 239 ELYPSGVPRLDKLLN-GGFERGTVSILTGPSGVGKTTLAFQFMKEAAGRGDRSVAYVFEE 297

Query: 106 ALD--SIYARKLGVDLKNLLIS--QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
            L         +G+ L  +  S        + L        +     +  +       R 
Sbjct: 298 RLSILKKRCESVGMPLSRMEQSGTLAIERVEPLRYAPDEFAARVRAEVEENDA-----RI 352

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
            +   +      M+ R +   L  LT  +      ++  N++    G       + TG  
Sbjct: 353 VMIDSVAGYRLSMRGRSLEAPLFALTKYLQNVGVTVLLTNEVEAVTGEF-----SATGAG 407

Query: 222 ALKFYSSV---RLDIRRVGSIK 240
                 +V   R    R   IK
Sbjct: 408 LSYMADTVVFLRYLELRGELIK 429



 Score = 45.2 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
            + +G  GLD  L  GG+ +GR   + G    GKTTL  H +    + G  C F+ 
Sbjct: 4   RIPTGLSGLDEIL-HGGYIRGRAYLVCGGPGHGKTTLGAHFLHAGHQAGEACLFIS 58


>gi|255527258|ref|ZP_05394139.1| DNA repair protein RadA [Clostridium carboxidivorans P7]
 gi|255509043|gb|EET85402.1| DNA repair protein RadA [Clostridium carboxidivorans P7]
          Length = 400

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 62/164 (37%), Gaps = 11/164 (6%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E   +G   L+  LG GG  KG +  I G    GK+TL L       +  G   +V  E 
Sbjct: 34  ERFDTGITELNRVLG-GGIVKGSLTLISGAPGIGKSTLLLQAANSISRKYGKVLYVSGEE 92

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           + + I  R  G  L+ +        E ++E  +  + +     +++DS+  L  ++    
Sbjct: 93  SEEQIKMR--GDRLEAMSSDLYIVSETSIEKIEEHIENTKPVFVIVDSIQTLFKQSITSA 150

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
               S     +  + +        I ++K I  FI     K G 
Sbjct: 151 PGSVSQVRESSNDIMR--------IGKTKGIPFFIVAHVTKQGE 186


>gi|194382504|dbj|BAG64422.1| unnamed protein product [Homo sapiens]
          Length = 337

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 69/225 (30%), Gaps = 46/225 (20%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           + +    LD  LG GG P  +  EI G    GKT L +      Q         G   F+
Sbjct: 91  IITFCSALDDILG-GGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFI 149

Query: 102 DAEHALDSIYARK-----------------------------LGVDLKNLLISQPDTGEQ 132
           D E +                                     L   L ++   +     +
Sbjct: 150 DTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNILSHIYYFRCRDYTE 209

Query: 133 ALE---ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
            L    +    +   +   +VI    A   R +++         ++ RL++   +++ S 
Sbjct: 210 LLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDD------LSLRTRLLNGLAQQMISL 263

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
            +  +  ++  NQM  KI           G +     +++RL   
Sbjct: 264 ANNHRLAVILTNQMTTKIDRNQALLVPALGES-WGHAATIRLIFH 307


>gi|119614840|gb|EAW94434.1| RAD51 homolog C (S. cerevisiae), isoform CRA_e [Homo sapiens]
          Length = 380

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 69/225 (30%), Gaps = 46/225 (20%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           + +    LD  LG GG P  +  EI G    GKT L +      Q         G   F+
Sbjct: 100 IITFCSALDDILG-GGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFI 158

Query: 102 DAEHALDSIYARK-----------------------------LGVDLKNLLISQPDTGEQ 132
           D E +                                     L   L ++   +     +
Sbjct: 159 DTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNILSHIYYFRCRDYTE 218

Query: 133 ALE---ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
            L    +    +   +   +VI    A   R +++         ++ RL++   +++ S 
Sbjct: 219 LLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDD------LSLRTRLLNGLAQQMISL 272

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
            +  +  ++  NQM  KI           G +     +++RL   
Sbjct: 273 ANNHRLAVILTNQMTTKIDRNQALLVPALGES-WGHAATIRLIFH 316


>gi|17402896|ref|NP_478123.1| DNA repair protein RAD51 homolog 3 isoform 1 [Homo sapiens]
 gi|3914534|sp|O43502|RA51C_HUMAN RecName: Full=DNA repair protein RAD51 homolog 3; Short=R51H3;
           AltName: Full=RAD51 homolog C; AltName: Full=RAD51-like
           protein 2
 gi|2909801|gb|AAC39604.1| Rad51C [Homo sapiens]
 gi|47777661|gb|AAT38108.1| RAD51 homolog C (S. cerevisiae) [Homo sapiens]
 gi|78070501|gb|AAI07754.1| RAD51 homolog C (S. cerevisiae) [Homo sapiens]
 gi|119614839|gb|EAW94433.1| RAD51 homolog C (S. cerevisiae), isoform CRA_d [Homo sapiens]
 gi|261860596|dbj|BAI46820.1| RAD51 homolog C [synthetic construct]
          Length = 376

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 69/225 (30%), Gaps = 46/225 (20%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           + +    LD  LG GG P  +  EI G    GKT L +      Q         G   F+
Sbjct: 100 IITFCSALDDILG-GGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFI 158

Query: 102 DAEHALDSIYARK-----------------------------LGVDLKNLLISQPDTGEQ 132
           D E +                                     L   L ++   +     +
Sbjct: 159 DTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNILSHIYYFRCRDYTE 218

Query: 133 ALE---ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
            L    +    +   +   +VI    A   R +++         ++ RL++   +++ S 
Sbjct: 219 LLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDD------LSLRTRLLNGLAQQMISL 272

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
            +  +  ++  NQM  KI           G +     +++RL   
Sbjct: 273 ANNHRLAVILTNQMTTKIDRNQALLVPALGES-WGHAATIRLIFH 316


>gi|326426805|gb|EGD72375.1| hypothetical protein PTSG_00395 [Salpingoeca sp. ATCC 50818]
          Length = 335

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 87/221 (39%), Gaps = 36/221 (16%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---GGT---CA 99
           + +S G  GLD    +G    G ++++ G  S+GKT LAL      Q+    GG      
Sbjct: 77  DPISWGDAGLDR---VGPIRTGHLIDLCGESSAGKTQLALQLCLAVQQPPECGGISARAV 133

Query: 100 FVDAEHALDSIYARKLGVDL-------------KNLLISQPDTGEQ----ALEITDMLVR 142
           F++ E         +L                  N+  ++ +T ++      E    L+ 
Sbjct: 134 FINTEARFPMSRWHQLAKHCAQRYPSLASIAVSDNVFTNRINTADEFWMFVHEALPSLLS 193

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           S  V ++VIDS+AAL  RA+    + ES    +A ++    R+L       K  +V INQ
Sbjct: 194 SSGVRLVVIDSIAALF-RADF--ALDES--AARAHVLFDIGRQLKQLAHAHKTAIVCINQ 248

Query: 203 MRMKIGVMFGSPETTTG-----GNALKFYSSVRLDIRRVGS 238
           +   +          +      G A     + R  +RR+ S
Sbjct: 249 VSAHVPEEVLPSFAPSRVIPALGLAWSSCINARYFVRRITS 289


>gi|255320353|ref|ZP_05361537.1| DNA repair protein RadA [Acinetobacter radioresistens SK82]
 gi|262379364|ref|ZP_06072520.1| DNA repair protein RadA [Acinetobacter radioresistens SH164]
 gi|255302548|gb|EET81781.1| DNA repair protein RadA [Acinetobacter radioresistens SK82]
 gi|262298821|gb|EEY86734.1| DNA repair protein RadA [Acinetobacter radioresistens SH164]
          Length = 463

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 83/264 (31%), Gaps = 36/264 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            + +G    D  LG GG   G +V I G    GK+T+ L T            +V  E +
Sbjct: 74  RLPTGIGEFDRVLG-GGLVTGSVVLIGGDPGIGKSTILLQTATHMASANSAALYVTGEES 132

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           L  +  R   +DL           E  +E    ++      + ++DS+  L         
Sbjct: 133 LSQVALRAQRLDLPT--DRLKVMAETCVERICEVLAHERPAVAILDSIQTLYTETLQSAP 190

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
            G S     A L       LT     S    +F+     K G +        G   L+  
Sbjct: 191 GGVSQIRESAAL-------LTRFAKNSGT-ALFLVGHVTKEGAL-------AGPRVLEHM 235

Query: 227 SSVRLDI--------RRVGSIKDKDSITGNQTRVKVVKNKMASP--FKQVEFDIMYGEG- 275
               L          R + ++K++     N+  V  + +K           F   Y E  
Sbjct: 236 VDCVLYFEGQSDSRYRMIRAVKNRFGAV-NELGVFGMTDKGLREVANPSAIFLSRYDEAI 294

Query: 276 ------ISFFGELIDLGVKASIVD 293
                 IS  G    L    ++VD
Sbjct: 295 PGSIVMISREGTRPLLVEVQALVD 318


>gi|219872055|ref|YP_002476430.1| DNA repair protein RadA [Haemophilus parasuis SH0165]
 gi|219692259|gb|ACL33482.1| DNA repair protein RadA [Haemophilus parasuis SH0165]
          Length = 458

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 63/166 (37%), Gaps = 10/166 (6%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
            G I +L       + +   SSG   LD  LG GG   G  + I G   +GK+TL L  +
Sbjct: 58  TGKIQRLSDID--LQEVPRFSSGFYELDRVLG-GGIVPGSAILIGGHPGAGKSTLLLQVM 114

Query: 89  AQSQKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
               ++  T  +V  E +L  +  R  +LG+   NL +    + E    +          
Sbjct: 115 CGLSQSVPT-LYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEHICNLA----DQEKP 169

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
            ++VIDS+  +            +     A  +++  +    +I  
Sbjct: 170 KLMVIDSIQVMHLSDIQSSPGSVAQVRECAAFLTRYAKTRQVAIIM 215


>gi|209946388|gb|ACI97425.1| spindle B [Drosophila melanogaster]
          Length = 341

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 78/238 (32%), Gaps = 25/238 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCA 99
             VS G   LD   G GG     I E+ G    GKT L L      Q        G   A
Sbjct: 86  SRVSFGCSALDRCTG-GGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVA 144

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           ++  E +  +    ++    +             + + +  + +  +   VI+ +  L  
Sbjct: 145 YICTESSFPARRLLQMSKACEKRHPEMELNFLGNIFV-ENHIEAEPLLACVINRIPRLMQ 203

Query: 160 RAEIEGDMGESLPG---------MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +  I   + +S+            +AR M +    L S   +  C +V +NQ+  + G  
Sbjct: 204 QHGIGLIIIDSVAAIFRLYXXYLERARHMRRLADALLSYADKYNCAVVCVNQVATRDG-- 261

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
               E    G         RL + RV     K    G+Q         + SP    +F
Sbjct: 262 --QDEIPCLGLQWAHLGRTRLRVSRVP----KQHRMGDQLITVRKLEILYSPETPNDF 313


>gi|209946368|gb|ACI97415.1| spindle B [Drosophila melanogaster]
 gi|209946390|gb|ACI97426.1| spindle B [Drosophila melanogaster]
          Length = 341

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 78/238 (32%), Gaps = 25/238 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCA 99
             VS G   LD   G GG     I E+ G    GKT L L      Q        G   A
Sbjct: 86  SRVSFGCSALDRCTG-GGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVA 144

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           ++  E +  +    ++    +             + + +  + +  +   VI+ +  L  
Sbjct: 145 YICTESSFPARRLLQMSKACEKRHPEMELNFLGNIFV-ENHIEAEPLLACVINRIPRLMQ 203

Query: 160 RAEIEGDMGESLPG---------MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +  I   + +S+            +AR M +    L S   +  C +V +NQ+  + G  
Sbjct: 204 QHGIGLIIIDSVAAIFRLYNDYLERARHMRRLADALLSYADKYNCAVVCVNQVATRDG-- 261

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
               E    G         RL + RV     K    G+Q         + SP    +F
Sbjct: 262 --QDEIPCLGLQWAHLGRTRLRVSRVP----KQHRMGDQLITVRKLEILYSPETPNDF 313


>gi|209946358|gb|ACI97410.1| spindle B [Drosophila melanogaster]
 gi|209946362|gb|ACI97412.1| spindle B [Drosophila melanogaster]
 gi|209946366|gb|ACI97414.1| spindle B [Drosophila melanogaster]
 gi|209946370|gb|ACI97416.1| spindle B [Drosophila melanogaster]
 gi|209946372|gb|ACI97417.1| spindle B [Drosophila melanogaster]
 gi|209946374|gb|ACI97418.1| spindle B [Drosophila melanogaster]
 gi|209946380|gb|ACI97421.1| spindle B [Drosophila melanogaster]
 gi|209946382|gb|ACI97422.1| spindle B [Drosophila melanogaster]
 gi|209946386|gb|ACI97424.1| spindle B [Drosophila melanogaster]
          Length = 341

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 78/238 (32%), Gaps = 25/238 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCA 99
             VS G   LD   G GG     I E+ G    GKT L L      Q        G   A
Sbjct: 86  SRVSFGCSALDRCTG-GGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVA 144

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           ++  E +  +    ++    +             + + +  + +  +   VI+ +  L  
Sbjct: 145 YICTESSFPARRLLQMSKACEKRHPEMELNFLGNIFV-ENHIEAEPLLACVINRIPRLMQ 203

Query: 160 RAEIEGDMGESLPG---------MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +  I   + +S+            +AR M +    L S   +  C +V +NQ+  + G  
Sbjct: 204 QHGIGLIIIDSVAAIFRLYNDYLERARHMRRLADALLSYADKYNCAVVCVNQVATRDG-- 261

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
               E    G         RL + RV     K    G+Q         + SP    +F
Sbjct: 262 --QDEIPCLGLQWAHLGRTRLRVSRVP----KQHRMGDQLITVRKLEILYSPETPNDF 313


>gi|209946354|gb|ACI97408.1| spindle B [Drosophila melanogaster]
          Length = 341

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 78/238 (32%), Gaps = 25/238 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCA 99
             VS G   LD   G GG     I E+ G    GKT L L      Q        G   A
Sbjct: 86  SRVSFGCSALDRCTG-GGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVA 144

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           ++  E +  +    ++    +             + + +  + +  +   VI+ +  L  
Sbjct: 145 YICTESSFPARRLLQMSKACEKRHPEMELNFLGNIFV-ENHIEAEPLLACVINRIPRLMQ 203

Query: 160 RAEIEGDMGESLPG---------MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +  I   + +S+            +AR M +    L S   +  C +V +NQ+  + G  
Sbjct: 204 QHGIGLIIIDSVAAIFRLYNDYLERARHMRRLADALLSYADKYNCAVVCVNQVATRDG-- 261

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
               E    G         RL + RV     K    G+Q         + SP    +F
Sbjct: 262 --QDEIPCLGLQWAHLGRTRLRVSRVP----KQHRMGDQLITVRKLEILYSPETPNDF 313


>gi|209946344|gb|ACI97403.1| spindle B [Drosophila melanogaster]
 gi|209946356|gb|ACI97409.1| spindle B [Drosophila melanogaster]
 gi|209946384|gb|ACI97423.1| spindle B [Drosophila melanogaster]
 gi|209946396|gb|ACI97429.1| spindle B [Drosophila melanogaster]
          Length = 341

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 78/238 (32%), Gaps = 25/238 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCA 99
             VS G   LD   G GG     I E+ G    GKT L L      Q        G   A
Sbjct: 86  SRVSFGCSALDRCTG-GGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVA 144

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           ++  E +  +    ++    +             + + +  + +  +   VI+ +  L  
Sbjct: 145 YICTESSFPARRLLQMSKACEKRHPEMELNFLGNIFV-ENHIEAEPLLACVINRIPRLMQ 203

Query: 160 RAEIEGDMGESLPG---------MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +  I   + +S+            +AR M +    L S   +  C +V +NQ+  + G  
Sbjct: 204 QHGIGLIIIDSVAAIFRLYNDYLERARHMRRLADALLSYADKYNCAVVCVNQVATRDG-- 261

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
               E    G         RL + RV     K    G+Q         + SP    +F
Sbjct: 262 --QDEIPCLGLQWAHLGRTRLRVSRVP----KQHRMGDQLITVRKLEILYSPETPNDF 313


>gi|254411257|ref|ZP_05025034.1| KaiA binding family [Microcoleus chthonoplastes PCC 7420]
 gi|196181758|gb|EDX76745.1| KaiA binding family [Microcoleus chthonoplastes PCC 7420]
          Length = 570

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 51/264 (19%), Positives = 86/264 (32%), Gaps = 34/264 (12%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +SSG   LD  LG  G+ +G  + I G   +GKTTLA H    + + G  C +   E 
Sbjct: 252 ERISSGIERLDTMLGGEGYFRGSSILITGTAGTGKTTLAAHFAEATCRRGERCLYFAFEE 311

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS----GAVDIIVIDSVAALTPRA 161
           A      +++  +++++ I+ P+   Q L        +        + +   + A  P  
Sbjct: 312 A-----PQQIIRNMQSVGINLPEFVNQGLLRFQARRPTAYGLEMHLVQIHSLIKAFQPTV 366

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG-G 220
            I   M     G         L +L   +   +  +   N     I       +T  G  
Sbjct: 367 VIIDPMSNLTMGGTLLQAKAFLFRLIDLLKSQQITVFLTNL----IQGGMLVEQTEIGVS 422

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE----------FDI 270
           + +  +  VR                 N+    +    M    +  E           D+
Sbjct: 423 SLMDTWLEVRFVESNGER---------NRVFFILKSRGMEHSNQVRELKLTKQGVELVDV 473

Query: 271 MYGEGISFFGELIDL-GVKASIVD 293
             GEGI   G    +   K   V 
Sbjct: 474 YLGEGIVLTGTARRIQAEKEKAVK 497



 Score = 43.3 bits (100), Expect = 0.053,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 4/117 (3%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           +         +    +G  GLD  +  GG P GR   I G    GKT + +  I +    
Sbjct: 1   MSKTTLAKNQLRKCPTGIKGLDE-ITDGGLPLGRTTLICGTAGCGKTLMGMEFIVRGILD 59

Query: 95  GGTCAFVDAEHALDSIYAR---KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
               A   A     +   +    LG DL  L  ++  + +        +  +G  D+
Sbjct: 60  YSESAVFMAFEETAAELTQNVASLGWDLDELTATEKLSIDYVYIDPQEIEETGDYDL 116


>gi|17136506|ref|NP_476740.1| spindle B [Drosophila melanogaster]
 gi|3643817|gb|AAC42663.1| spindle B [Drosophila melanogaster]
 gi|7299874|gb|AAF55050.1| spindle B [Drosophila melanogaster]
 gi|201065577|gb|ACH92198.1| FI03211p [Drosophila melanogaster]
 gi|209946376|gb|ACI97419.1| spindle B [Drosophila melanogaster]
 gi|209946392|gb|ACI97427.1| spindle B [Drosophila melanogaster]
 gi|209946398|gb|ACI97430.1| spindle B [Drosophila melanogaster]
 gi|209946404|gb|ACI97433.1| spindle B [Drosophila melanogaster]
          Length = 341

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 78/238 (32%), Gaps = 25/238 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCA 99
             VS G   LD   G GG     I E+ G    GKT L L      Q        G   A
Sbjct: 86  SRVSFGCSALDRCTG-GGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVA 144

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           ++  E +  +    ++    +             + + +  + +  +   VI+ +  L  
Sbjct: 145 YICTESSFPARRLLQMSKACEKRHPEMELNFLGNIFV-ENHIEAEPLLACVINRIPRLMQ 203

Query: 160 RAEIEGDMGESLPG---------MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +  I   + +S+            +AR M +    L S   +  C +V +NQ+  + G  
Sbjct: 204 QHGIGLIIIDSVAAIFRLYNDYLERARHMRRLADALLSYADKYNCAVVCVNQVATRDG-- 261

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
               E    G         RL + RV     K    G+Q         + SP    +F
Sbjct: 262 --QDEIPCLGLQWAHLGRTRLRVSRVP----KQHRMGDQLITVRKLEILYSPETPNDF 313


>gi|147777505|emb|CAN60498.1| hypothetical protein VITISV_027869 [Vitis vinifera]
          Length = 2077

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 60/287 (20%), Positives = 93/287 (32%), Gaps = 66/287 (22%)

Query: 51   GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGGTCA---FVDAE 104
            G   LD  L  GG P   I E+     SGKT L L  +  +Q     GG  A   ++ +E
Sbjct: 1798 GCPILDRCLA-GGVPCNSITELVAESGSGKTQLCLQLVLSAQLPTSLGGLAASSLYIHSE 1856

Query: 105  HALDSIYARKLG---------------VDLKNLLISQPDTGEQALEITDMLV-------R 142
                S   ++L                  L  +L+    + +Q  ++   +         
Sbjct: 1857 FPFPSRRLQQLSQSFRSSYSHVLDSEYNPLDFVLVRGVQSADQLFDVLLKMDSVLLRPPT 1916

Query: 143  SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
               V +IVIDS+AAL  R E E    +     ++ L  +   KL +   R    +V  NQ
Sbjct: 1917 QLPVRLIVIDSIAALF-RGEFENTPFD--LKRRSSLFFKISGKLKALAERFGLAVVVTNQ 1973

Query: 203  MRMKIGVMFGSPETTTGG----------------NALKFYSSVRLDIRRVGSIKDKDSIT 246
            +   +G   G      G                  +     + RL + R   I  + +  
Sbjct: 1974 VVDFVGQAGGLNGLRVGNLGSLWSSGRRVCAALGLSWANCVNSRLFLSRNEEIVXEVTGL 2033

Query: 247  GN-----------QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
            G            +  + V+      P    EF       IS  G L
Sbjct: 2034 GGVGAGDTVSRLTRRHLHVIFAPHL-PESSCEFV------ISREGVL 2073


>gi|225446054|ref|XP_002268968.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 300

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 60/287 (20%), Positives = 93/287 (32%), Gaps = 66/287 (22%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGGTCA---FVDAE 104
           G   LD  L  GG P   I E+     SGKT L L  +  +Q     GG  A   ++ +E
Sbjct: 21  GCPILDRCLA-GGVPCNSITELVAESGSGKTQLCLQLVLSAQLPTSLGGLAASSLYIHSE 79

Query: 105 HALDSIYARKLG---------------VDLKNLLISQPDTGEQALEITDMLV-------R 142
               S   ++L                  L  +L+    + +Q  ++   +         
Sbjct: 80  FPFPSRRLQQLSQSFRSSYSHVLDSEYNPLDFVLVRGVQSADQLFDVLLKMDSVLLRPPT 139

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
              V +IVIDS+AAL  R E E    +     ++ L  +   KL +   R    +V  NQ
Sbjct: 140 QLPVRLIVIDSIAALF-RGEFENTPFD--LKRRSSLFFKISGKLKALAERFGLAVVVTNQ 196

Query: 203 MRMKIGVMFGSPETTTGG----------------NALKFYSSVRLDIRRVGSIKDKDSIT 246
           +   +G   G      G                  +     + RL + R   I  + +  
Sbjct: 197 VVDFVGQAGGLNGLRVGNLGSLWSSGRRVCAALGLSWANCVNSRLFLSRNEEIVGEVTGL 256

Query: 247 GN-----------QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           G            +  + V+      P    EF       IS  G L
Sbjct: 257 GGVGAGDTVSRLTRRHLHVIFAPHL-PESSCEFV------ISREGVL 296


>gi|209946364|gb|ACI97413.1| spindle B [Drosophila melanogaster]
          Length = 341

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 78/238 (32%), Gaps = 25/238 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCA 99
             VS G   LD   G GG     I E+ G    GKT L L      Q        G   A
Sbjct: 86  SRVSFGCSALDRCTG-GGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVA 144

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           ++  E +  +    ++    +             + + +  + +  +   VI+ +  L  
Sbjct: 145 YICTESSFPARRLLQMSKACEKRHPEMELNFLGNIFV-ENHIEAEPLLACVINRIPRLMQ 203

Query: 160 RAEIEGDMGESLPG---------MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +  I   + +S+            +AR M +    L S   +  C +V +NQ+  + G  
Sbjct: 204 QHGIGLIIIDSVXXIFRLYXXYLERARHMRRLADALLSYADKYNCAVVCVNQVATRDG-- 261

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
               E    G         RL + RV     K    G+Q         + SP    +F
Sbjct: 262 --QDEIPCLGLQWAHLGRTRLRVSRVP----KQHRMGDQLITVRKLEILYSPETPNDF 313


>gi|114769306|ref|ZP_01446932.1| DNA Repair Protein [alpha proteobacterium HTCC2255]
 gi|114550223|gb|EAU53104.1| DNA Repair Protein [alpha proteobacterium HTCC2255]
          Length = 458

 Score = 53.7 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 60/163 (36%), Gaps = 5/163 (3%)

Query: 25  RVYG--KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           +  G  KG  + LG   ++   ++  + G    D  LG G  P   I+ + G    GK+T
Sbjct: 46  KTLGANKGRKIILGDLTTVDAPLKRSTLGINEFDRVLGGGLVPASAIL-VSGDPGIGKST 104

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L   A   +TG    ++  E A   I  R   ++L +  ++        L      + 
Sbjct: 105 LLLQAAADFARTGKKVIYISGEEASSQIRMRAQRLNLTDASVNLATETN--LRDILTTLE 162

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
               D+ +IDS+  +            S     A  ++   ++
Sbjct: 163 EEKPDLAIIDSIQTMWADHVDSSPGSVSQVRATAHELTNFAKR 205


>gi|291225163|ref|XP_002732570.1| PREDICTED: X-ray repair complementing defective repair in Chinese
           hamster cells 3-like [Saccoglossus kowalevskii]
          Length = 383

 Score = 53.7 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 86/240 (35%), Gaps = 35/240 (14%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGT 97
            +  V +G   LD  L  GG     I EI G  ++GKT L +                G 
Sbjct: 77  KVRYVKTGCEVLDDFL-RGGILSQGITEIAGESAAGKTQLCMQLCLTVQLPCHMGGLAGG 135

Query: 98  CAFVDAEHALDSIYARK--------------LGVDLKNLLISQPDTGEQALEIT-----D 138
             ++  E    S    +              + + + + +  +  + +++L         
Sbjct: 136 AVYICTEDVFPSKRLHQMIKYFNRKLGPELEMQLAVGDHIFVEHASDQESLWKCINQRVP 195

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           +L+  G V  IVIDS+AAL       G+   S    +A  +     +L     +    +V
Sbjct: 196 VLLARGMVKFIVIDSIAALF-----RGEYDFSEAAKRAHHLRSFGDQLRKLNQQYNAPVV 250

Query: 199 FINQMR--MKIGVMFGSPETTTG-GNALKFYSSVRLDIRRVG-SIKDKDSITGNQTRVKV 254
            +NQ+   MK    +G  E     G +     + RL + R   +I   D  TGN    KV
Sbjct: 251 CVNQVSANMKGDSEYGRYEFIPALGLSWSNLVTCRLLLSRTSMTIDINDPDTGNNAVAKV 310


>gi|269103378|ref|ZP_06156075.1| DNA repair protein RadA [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268163276|gb|EEZ41772.1| DNA repair protein RadA [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 462

 Score = 53.7 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 62/158 (39%), Gaps = 11/158 (6%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L    S  + +   SSG   LD  LG GG   G ++ + G   +GK+TL L +I   
Sbjct: 63  VQKLSDVES--KDVPRFSSGISELDRVLG-GGVVPGSVLLLCGDPGAGKSTLLLQSIGAV 119

Query: 92  QKTGGTCAFVDAEHALDSIYARKL---GVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
                +  +V  E ++  I  R       +L  + +    + EQ + +    +     D 
Sbjct: 120 AAH-KSALYVSGEESIHQISQRAKRLGTPNLDRINVVAETSVEQVINL----IEQQKADF 174

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           ++IDS+  +T           S     A  +++  +  
Sbjct: 175 VIIDSIQTMTVAHNDSAAGSPSQVKESAAALTRYAKTH 212


>gi|58039401|ref|YP_191365.1| DNA repair protein RadA [Gluconobacter oxydans 621H]
 gi|58001815|gb|AAW60709.1| DNA repair protein RadA [Gluconobacter oxydans 621H]
          Length = 494

 Score = 53.7 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 63/169 (37%), Gaps = 9/169 (5%)

Query: 25  RVYGKGAIMQLGS---QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           R  GK +  +L +    G        +++    LD  LG GG     +V + G    GK+
Sbjct: 72  RKTGKLSAGRLQTVRLDGETRPP-PRITTSIAELDRVLG-GGLVPASVVLVGGDPGIGKS 129

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARK----LGVDLKNLLISQPDTGEQALEIT 137
           TL L T     ++G    +V  E ++D I  R     L  D K L            EI 
Sbjct: 130 TLMLQTTCALARSGHRVLYVSGEESVDQIRIRAQRLGLDRDPKMLDSLDLAASINVGEIV 189

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
             L +  A  ++VIDS+  +   +        S     A  + +  + L
Sbjct: 190 GSLEQDRAHTVVVIDSIQTMWLESVESSPGSVSQVRASAFELIRLAKTL 238


>gi|124027107|ref|YP_001012427.1| RecA-like ATPase (KaiC-like) [Hyperthermus butylicus DSM 5456]
 gi|123977801|gb|ABM80082.1| RecA-like ATPase (KaiC-like) [Hyperthermus butylicus DSM 5456]
          Length = 497

 Score = 53.7 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 15/138 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E V SG  GLD  L +GGFP+G +V + G   +GK+T A   + +  + G    +++   
Sbjct: 16  ETVPSGIEGLDKIL-LGGFPRGAVVLLAGNPGTGKSTFAARFVYEGCRRGERSIYLNFVE 74

Query: 106 ALDSIYAR--KLGVDLKNL------------LISQPDTGEQALEITDMLVRSGAVDIIVI 151
                Y     LG+D +               I+  D     LE    LV       + I
Sbjct: 75  PRRDFYDHMTMLGMDFEECERKGLFHYMEAVTIADEDALITQLEDLVKLVMETKAKRVAI 134

Query: 152 DSVAALTPRAEIEGDMGE 169
           DS+ A+    ++   + E
Sbjct: 135 DSITAMLQIVKVPSRVRE 152


>gi|325186625|emb|CCA21173.1| DNA repair protein XRCC3 putative [Albugo laibachii Nc14]
          Length = 262

 Score = 53.7 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 82/245 (33%), Gaps = 37/245 (15%)

Query: 35  LGSQGSIFEGIEVV-SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           + +   +++ +  +  +GS  +D  L  GGF +G + EI G  SSGKT L L  + Q   
Sbjct: 1   MQTAYDLWQKLPTILPTGSPNIDRLL-HGGFRQGLLHEICGEASSGKTQLCLQLLLQMCL 59

Query: 94  TGGTCAFVDAEHALDSIYARKLGVD---------------------------LKNLLISQ 126
                 +V  E         +L                              L  + I  
Sbjct: 60  EDEAACYVSTEGIGSIKRLHELAGIYADRHAFALKKRRRGFTGDTQSGSKFFLDRIFIEH 119

Query: 127 PDTGEQALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
               ++ + +    + S        ++VIDS+AAL  R E    + +     +ARLM Q 
Sbjct: 120 IYEIDELIGLLQSRLPSLLTQKQVTLVVIDSIAALF-RPESTKSIQD--VSERARLMFQI 176

Query: 183 LRKLTSSISRSKCILVFINQMRMK-IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
              +     R   + +  NQ+          +      G +       RL + R    ++
Sbjct: 177 ANSIKILCGRYNVVFIVTNQVSSIFEPNSRENRFKPALGLSWSNCIHQRLVLSRDADTEE 236

Query: 242 KDSIT 246
           +    
Sbjct: 237 RHVKV 241


>gi|91205131|ref|YP_537486.1| DNA repair protein RadA [Rickettsia bellii RML369-C]
 gi|157827536|ref|YP_001496600.1| DNA repair protein RadA [Rickettsia bellii OSU 85-389]
 gi|122425933|sp|Q1RJR7|RADA_RICBR RecName: Full=DNA repair protein RadA homolog; AltName: Full=DNA
           repair protein Sms homolog
 gi|91068675|gb|ABE04397.1| DNA repair protein RadA [Rickettsia bellii RML369-C]
 gi|157802840|gb|ABV79563.1| predicted repair protein [Rickettsia bellii OSU 85-389]
          Length = 448

 Score = 53.7 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 69/176 (39%), Gaps = 7/176 (3%)

Query: 24  QRVYGKGAIMQLGSQGSIFE------GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           ++V     I ++GS+    +          +S+    LD  LG GG   G  + I G   
Sbjct: 36  EKVISNKNIAKIGSKQDFEQLSSNVTDQVRISTPIGELDRVLG-GGLVLGSAILIGGDPG 94

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
            GK+TL L  +A S  +   C ++  E +LD I  R L +DL N   +          I 
Sbjct: 95  IGKSTLLLQLVAGSFASKVKCLYITGEESLDQIKLRALRLDLVNDKTNILAANNLEDIIA 154

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
            +    G +D++VIDS+  +  R         S     A  +    ++    I  S
Sbjct: 155 SLEANKGNIDLVVIDSIQTIATRELTSPPGTVSQIRTCAHELVNYAKQNNIIILLS 210


>gi|110349609|gb|ABG73279.1| putative DMC1 protein [Leucoagaricus sp. G60]
          Length = 116

 Score = 53.7 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---- 92
                 + + ++S+GS  +D  LG GG     I EIYG   +GKT +A      +Q    
Sbjct: 16  EVQERRKRVHIISTGSKSVDAILG-GGLMSQSITEIYGEFRTGKTQMAHTMSVVTQLPPD 74

Query: 93  --KTGGTCAFVDAEHALDSIYARKLGVDLK 120
                G  A++D E        R +     
Sbjct: 75  LGGAAGKVAYIDTEGTFRPDRIRAIADRFG 104


>gi|15899197|ref|NP_343802.1| hypothetical protein SSO2452 [Sulfolobus solfataricus P2]
 gi|227826650|ref|YP_002828429.1| circadian clock protein, KaiC [Sulfolobus islandicus M.14.25]
 gi|227829291|ref|YP_002831070.1| Circadian clock protein KaiC central region [Sulfolobus islandicus
           L.S.2.15]
 gi|229578061|ref|YP_002836459.1| circadian clock protein, KaiC [Sulfolobus islandicus Y.G.57.14]
 gi|229583273|ref|YP_002841672.1| putative circadian clock protein, KaiC [Sulfolobus islandicus
           Y.N.15.51]
 gi|229583814|ref|YP_002842315.1| circadian clock protein, KaiC [Sulfolobus islandicus M.16.27]
 gi|238618736|ref|YP_002913561.1| putative circadian clock protein, KaiC [Sulfolobus islandicus
           M.16.4]
 gi|284996648|ref|YP_003418415.1| KaiC domain protein [Sulfolobus islandicus L.D.8.5]
 gi|13815755|gb|AAK42592.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
 gi|227455738|gb|ACP34425.1| Circadian clock protein KaiC central region [Sulfolobus islandicus
           L.S.2.15]
 gi|227458445|gb|ACP37131.1| putative circadian clock protein, KaiC [Sulfolobus islandicus
           M.14.25]
 gi|228008775|gb|ACP44537.1| putative circadian clock protein, KaiC [Sulfolobus islandicus
           Y.G.57.14]
 gi|228013989|gb|ACP49750.1| putative circadian clock protein, KaiC [Sulfolobus islandicus
           Y.N.15.51]
 gi|228018863|gb|ACP54270.1| putative circadian clock protein, KaiC [Sulfolobus islandicus
           M.16.27]
 gi|238379805|gb|ACR40893.1| putative circadian clock protein, KaiC [Sulfolobus islandicus
           M.16.4]
 gi|284444543|gb|ADB86045.1| KaiC domain protein [Sulfolobus islandicus L.D.8.5]
 gi|323473729|gb|ADX84335.1| RecA-like, putative circadian clock protein, KaiC [Sulfolobus
           islandicus REY15A]
 gi|323476381|gb|ADX81619.1| RecA-like, putative circadian clock protein, KaiC [Sulfolobus
           islandicus HVE10/4]
          Length = 262

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 100/260 (38%), Gaps = 26/260 (10%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +  +S+G L  D  +  GG P+G  + + G   +GKT  +LH IA+  + G  C +V  E
Sbjct: 2   VSRLSTGILDFDKLI-QGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
            + DSI  +      K       +  E+ L I D L++          S+  LTP  E+ 
Sbjct: 61  ESRDSIIRQA-----KQFNWDFEEYIEKKLIIIDALMKEKEDQW----SLVNLTPE-ELV 110

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL- 223
             + E+   +        +  +++       +   I+    ++   +      T   A+ 
Sbjct: 111 NKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAIT 170

Query: 224 ---------KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
                    +  +   +  RR+  I++ +    ++  +     +        E DI+ G+
Sbjct: 171 TSQAFGFGVEHVADGIIRFRRM--IRNGEL---HRYILIEKMRQTDHDKHVWEIDIVNGK 225

Query: 275 GISFFGELIDLGVKASIVDK 294
           GI   G L +     ++ +K
Sbjct: 226 GIVLKGRLEERREDYTLPEK 245


>gi|325927395|ref|ZP_08188643.1| RecA-superfamily ATPase possibly involved in signal transduction
           [Xanthomonas perforans 91-118]
 gi|325542216|gb|EGD13710.1| RecA-superfamily ATPase possibly involved in signal transduction
           [Xanthomonas perforans 91-118]
          Length = 474

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 75/209 (35%), Gaps = 5/209 (2%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E V SG   +D  L  GG  +G    + GP  SGKT LAL  +  + + G  C  ++ + 
Sbjct: 222 EPVPSGVERIDALL-HGGPLRGTSTLLTGPAGSGKTNLALQFVVAACERGEHCCVLEFDE 280

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
              ++  R  G+ +            +  ++    V  G     V  SV     R  +  
Sbjct: 281 RTGTLLKRAEGLSMDLRKYMDAG-LLELHQMDPAEVTPGEFAWTVRGSVEERACRILVID 339

Query: 166 DMGESLPGMQAR-LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
            +   L  M     +   + +L S +++S      IN  +  +G M  S           
Sbjct: 340 SLNGYLASMPQEKQLMLQMHELLSYLNQSGVTTFLINPQQGLVGSMATSSTLNV-SYMAD 398

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
               +R    + G I+   S+  N++   
Sbjct: 399 TVVLLRFFEAK-GRIRKALSVIKNRSGAH 426


>gi|78047263|ref|YP_363438.1| RecA/DnaB superfamily regulatory protein [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|78035693|emb|CAJ23384.1| putative RecA/DnaB superfamily regulatory protein [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 499

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 75/209 (35%), Gaps = 5/209 (2%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E V SG   +D  L  GG  +G    + GP  SGKT LAL  +  + + G  C  ++ + 
Sbjct: 247 EPVPSGVERIDALL-HGGPLRGTSTLLTGPAGSGKTNLALQFVVAACERGEHCCVLEFDE 305

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
              ++  R  G+ +            +  ++    V  G     V  SV     R  +  
Sbjct: 306 RTGTLLKRAEGLSMDLRKYMDAG-LLELHQMDPAEVTPGEFAWTVRGSVEERACRILVID 364

Query: 166 DMGESLPGMQAR-LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
            +   L  M     +   + +L S +++S      IN  +  +G M  S           
Sbjct: 365 SLNGYLASMPQEKQLMLQMHELLSYLNQSGVTTFLINPQQGLVGSMATSSTLNV-SYMAD 423

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
               +R    + G I+   S+  N++   
Sbjct: 424 TVVLLRFFEAK-GRIRKALSVIKNRSGAH 451



 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +++GS GLD  L  GG P  R+  + G   +GKTTLAL  +  +   G +C +V     
Sbjct: 5   RITTGSTGLDTIL-RGGLPANRLYLLEGQPGAGKTTLALQFLLDAAAKGESCLYVTLSET 63

Query: 107 LDSIYARKLGVDLK 120
           +D +          
Sbjct: 64  IDELTEVAASHHWS 77


>gi|325917909|ref|ZP_08180082.1| RecA-superfamily ATPase possibly involved in signal transduction
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325535889|gb|EGD07712.1| RecA-superfamily ATPase possibly involved in signal transduction
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 504

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 79/214 (36%), Gaps = 16/214 (7%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF--VDA 103
           + VSSG   +D  L  GG  +G    + GP  SGKT +AL  ++ + + G  C     D 
Sbjct: 253 DAVSSGVERIDALL-HGGPLRGTSTLLTGPAGSGKTNVALQYVSAACERGEHCCVLQFDE 311

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
                   A  LG+DL+  L S      Q   +    +  G     V +SV A   R  +
Sbjct: 312 RTGTLLTRAEHLGMDLRKHLASGMLELHQ---MDPAELTPGEFAWAVRESVEARNCRILV 368

Query: 164 EGDMGESLPGMQAR-LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
              +   L  M     +   + +L S +++S      IN               +TG   
Sbjct: 369 IDSLNGYLSSMPQEKQLMLQMHELLSYLNQSGVTTFLIN------PQHGLVGTMSTGNLN 422

Query: 223 LKFYSSVRLDIR---RVGSIKDKDSITGNQTRVK 253
           + + +   +  R     G I+   S+  N++   
Sbjct: 423 ISYMADTVILFRFFEAQGRIRKALSVIKNRSGAH 456



 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +++G+ GLD  L  GG P  R+  + G   SGKTTLAL  +      G +C +V     
Sbjct: 11  RITTGTTGLDTIL-RGGLPANRLYLLEGQPGSGKTTLALQFLLDGAAKGESCLYVTLSET 69

Query: 107 LDS 109
           +D 
Sbjct: 70  IDE 72


>gi|225849980|ref|YP_002730214.1| DNA repair protein RadA [Persephonella marina EX-H1]
 gi|225645131|gb|ACO03317.1| DNA repair protein RadA [Persephonella marina EX-H1]
          Length = 447

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 4/113 (3%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+G   LD ALG GG   G+++ + G    GK+TL L   +   K      ++  E +
Sbjct: 69  RISTGIKTLDEALG-GGIVTGQVILVSGEPGIGKSTLLLQISSNISKE-RKVLYITGEES 126

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
              +Y R     +  L  +     E  LE+    +     D IV+DSV  +  
Sbjct: 127 AHQVYLRA--ERIGALSDNLLVLAETDLELIIDAINQEKPDFIVLDSVQTVYS 177


>gi|302413137|ref|XP_003004401.1| DNA repair protein RAD57 [Verticillium albo-atrum VaMs.102]
 gi|261356977|gb|EEY19405.1| DNA repair protein RAD57 [Verticillium albo-atrum VaMs.102]
          Length = 459

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 63/189 (33%), Gaps = 26/189 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-----KTGGTCAFV 101
           V+S+    LD ALG GG P G + EI G    GKT   L  +   Q       G    ++
Sbjct: 93  VISTLDDDLDRALG-GGIPTGYVTEIAGESGVGKTQFLLSLMLAVQLPSPHGLGRRALYI 151

Query: 102 DAEHALDSIYARKL--------------GVDLKNLLISQPDTGEQALEITDMLVR---SG 144
             E  L +   R++                    +++      E    I    V      
Sbjct: 152 STEAPLSTTRLRQILASNPLLSGLSEEERPTTDAIIVGSVADLESQEHILRFQVPVEVER 211

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESL---PGMQARLMSQALRKLTSSISRSKCILVFIN 201
           +   +++    A   RAE E  + ++     G ++  + +    L     +    +V  N
Sbjct: 212 SNIGLLVLDSVAANYRAEFERGVTKNHGSNMGARSNELIRLGALLRDLAQKYNLAVVVAN 271

Query: 202 QMRMKIGVM 210
           Q+  +    
Sbjct: 272 QVGDRFSSP 280


>gi|226823355|ref|NP_001152813.1| RAD51 homolog C [Nasonia vitripennis]
          Length = 314

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 90/262 (34%), Gaps = 38/262 (14%)

Query: 8   NIVDKS-KALEAALSQIQRVYGKGAIMQLGSQGSIFEGI-------EVVSSGSLGLDIAL 59
           N+  K  K    + S I++         L     +   I       E +S     L+ AL
Sbjct: 31  NLNSKQLKNFNLSRSDIEKQ--------LQPSQELGLDIWQRETQQEHISLCCSELEAAL 82

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYAR 113
           G GG     I E+ G   SGKT + +      Q         G   ++D      +   +
Sbjct: 83  G-GGIQCRVITELSGVPFSGKTQICMQLCISVQLNKCYGGLDGRAIYIDTRSGTCASRFK 141

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD-----MG 168
            +   L           ++ L+  ++L  +   + + I        ++  +       + 
Sbjct: 142 DIVRGLNKSHKDLNLNADEVLKCIEILSPNSVEEFVQIIDSLKFKMKSNKDEKKVRLIIV 201

Query: 169 ESL----------PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           +SL          P  +    S  L KL      ++  +V  N++ M++     S     
Sbjct: 202 DSLSMPILCCIDDPTKRPYYYSHILHKLHKLALINELAVVITNELVMQVDKDGKSYFAAA 261

Query: 219 GGNALKFYSSVRLDIRRVGSIK 240
           GG  +  Y+SV+L++ R+   K
Sbjct: 262 GGQYVADYASVKLEMTRLTDHK 283


>gi|297700682|ref|XP_002827366.1| PREDICTED: DNA repair protein RAD51 homolog 3-like [Pongo abelii]
          Length = 443

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 69/225 (30%), Gaps = 46/225 (20%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           + +    LD  LG GG P  +  EI G    GKT L +      Q         G   F+
Sbjct: 167 IITFCSALDDILG-GGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFI 225

Query: 102 DAEHALDSIYARK-----------------------------LGVDLKNLLISQPDTGEQ 132
           D E +                                     L   L ++   +     +
Sbjct: 226 DTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNILSHIYYFRCRDYTE 285

Query: 133 ALE---ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
            L    +    +   +   +VI    A   R +++         ++ RL++   +++ S 
Sbjct: 286 LLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDD------LSLRTRLLNGLAQQMISL 339

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
            +  +  ++  NQM  KI           G +     +++RL   
Sbjct: 340 ANNHRLAVILTNQMTTKIDKNQALLVPALGES-WGHAATIRLIFH 383


>gi|297272693|ref|XP_001104781.2| PREDICTED: DNA repair protein RAD51 homolog 3-like [Macaca mulatta]
          Length = 337

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 69/225 (30%), Gaps = 46/225 (20%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           + +    LD  LG GG P  +  EI G    GKT L +      Q         G   F+
Sbjct: 91  IITFCSALDDILG-GGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFI 149

Query: 102 DAEHALDSIYARK-----------------------------LGVDLKNLLISQPDTGEQ 132
           D E +                                     L   L ++   +     +
Sbjct: 150 DTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNILSHIYYFRCRDYTE 209

Query: 133 ALE---ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
            L    +    +   +   +VI    A   R +++         ++ RL++   +++ S 
Sbjct: 210 LLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDD------LSLRTRLLNGLAQQMISL 263

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
            +  +  ++  NQM  KI           G +     +++RL   
Sbjct: 264 ANNHRLAVILTNQMTTKIDKNQALLVPALGES-WGHAATIRLIFH 307


>gi|15896436|ref|NP_349785.1| DNA repair protein RadA [Clostridium acetobutylicum ATCC 824]
 gi|15026258|gb|AAK81125.1|AE007814_3 Predicted ATP-dependent serine protease, RADA homolog [Clostridium
           acetobutylicum ATCC 824]
 gi|325510593|gb|ADZ22229.1| DNA repair protein RadA [Clostridium acetobutylicum EA 2018]
          Length = 450

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 63/186 (33%), Gaps = 16/186 (8%)

Query: 29  KGAIMQLGSQGSIFEGI-----EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           K + + L S+      I     E   + +  L+  LG GG  KG I  I G    GK+TL
Sbjct: 43  KASKITLNSEPKCINNIKSGQYERYDTNNTELNRVLG-GGLVKGSITLISGAPGIGKSTL 101

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L          G   +V  E +   I  R  G  L     +     E  +E  +  V +
Sbjct: 102 LLQICQDIALKYGKVLYVSGEESEHQIKMR--GDRLGVTSANIYILAETNMESIERHVEN 159

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
                ++IDS+  L            S     A  + +        I+++  I  FI   
Sbjct: 160 IKPAFVIIDSIQTLYKDQITSAPGSVSQVRECANDIMR--------IAKTDNIPFFIVAH 211

Query: 204 RMKIGV 209
             K G 
Sbjct: 212 VTKQGE 217


>gi|312210746|emb|CBX90832.1| hypothetical protein [Leptosphaeria maculans]
          Length = 417

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 83/254 (32%), Gaps = 57/254 (22%)

Query: 47  VVSSGSLGLDIALGI---------GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
            VS+G   LD  L +         GG+ +G++ EI+GP   GKT+  +     + + G  
Sbjct: 36  AVSTGISQLDKVLSVPSLPGHDAPGGYLRGKVTEIFGPSGVGKTSFGIQAAVSALREGQQ 95

Query: 98  CAFVDAEHALDSIYARKLGVDLK----------------------------NLLISQPDT 129
             +VDA  A   +   +L   L+                                    T
Sbjct: 96  VVWVDAACA--PLVRERLDSVLESSKGDGHSREPGTDPAPTSTGVGDELCSRFHYFAAPT 153

Query: 130 GEQALEI---TDMLVRSGAVDIIVIDSVAAL----TPR------AEIEGDMGESLPGMQA 176
               L +   +          ++V+DS+A L     PR      A ++ +      G + 
Sbjct: 154 LAHLLALFVHSPASFPPQDTSLVVVDSLATLVDNAYPRNPDARMARVKTEQSRWAAGRRF 213

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA-LKFYSSVRLDIRR 235
            ++++ +       +     L+  +Q   +I     +           +   S RL + R
Sbjct: 214 AIINELISTFARFAATHDIALLLTSQTITRIRGASRAVLVPAMSGVEWENGISTRLVLFR 273

Query: 236 ----VGSIKDKDSI 245
                 S K+K  +
Sbjct: 274 DWAPGESTKNKSEV 287


>gi|83593877|ref|YP_427629.1| circadian clock protein KaiC [Rhodospirillum rubrum ATCC 11170]
 gi|83576791|gb|ABC23342.1| circadian clock protein KaiC [Rhodospirillum rubrum ATCC 11170]
          Length = 560

 Score = 53.3 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 62/164 (37%), Gaps = 12/164 (7%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +S+G   LD  L  GGF +G  + + G   SGK++LA   +  + + G +  +   E 
Sbjct: 248 ERISTGVADLDAMLSGGGFHRGSSILVSGVAGSGKSSLAASFVDATCRAGESVIYFSFEE 307

Query: 106 ALDS--IYARKLGVDLKNLLIS----------QPDTGEQALEITDMLVRSGAVDIIVIDS 153
           + +      + +G+DL   + S             + E  L I    V      ++++D 
Sbjct: 308 SHEQATRNMKSIGIDLGQWMASGQLKYIATRPTFYSLEMHLAIVLREVIKLKPSLVILDP 367

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           ++A T   E     G  L  +            T  +     ++
Sbjct: 368 ISAFTESGERLEVQGMLLRIVDFLKSRGVTGVFTHLMQSGDNLI 411



 Score = 37.5 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA----LHTIAQSQKTGGTCA 99
           GI    +G  G D  L +GG P GR   + G    GKT  A    +H +    + G   +
Sbjct: 6   GIRKSRTGIAGFDE-LTLGGLPTGRPTLVCGSAGCGKTLFAATFLVHGVKDFDEPGVFVS 64

Query: 100 F 100
           F
Sbjct: 65  F 65


>gi|227489402|ref|ZP_03919718.1| DNA repair protein RadA [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227540996|ref|ZP_03971045.1| DNA repair protein RadA [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227090580|gb|EEI25892.1| DNA repair protein RadA [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227183256|gb|EEI64228.1| DNA repair protein RadA [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 457

 Score = 53.3 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 64/188 (34%), Gaps = 18/188 (9%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + V +G   LD  LG  G  KG +V + G    GK+TL L   ++    G T  +V AE 
Sbjct: 75  KAVPTGIGELDRVLGA-GIVKGSVVLLAGEPGVGKSTLLLEVASRWASLGRTALYVTAEE 133

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +   +  R        L  +     E  L++    V      ++++DSV  +        
Sbjct: 134 SAGQVRMRA--ERTGALHDTLFLAAESNLDVVAGHVNQVKPSLVIVDSVQTMH------- 184

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
             G                +LT+    +   L+ +  +     V         G   L+ 
Sbjct: 185 APGVEGVAGGVAQSRAVTAQLTALAKTTGIPLLLVGHVTKDGNV--------AGPRVLEH 236

Query: 226 YSSVRLDI 233
              V L+ 
Sbjct: 237 LVDVVLNF 244


>gi|315231902|ref|YP_004072338.1| hypothetical protein TERMP_02141 [Thermococcus barophilus MP]
 gi|315184930|gb|ADT85115.1| hypothetical protein TERMP_02141 [Thermococcus barophilus MP]
          Length = 238

 Score = 53.3 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 48/215 (22%), Positives = 69/215 (32%), Gaps = 34/215 (15%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------- 95
            I  +S+G  GLD  +  GG   GR+  I GP  SGKTTLA H + +  + G        
Sbjct: 5   HITRISTGVKGLDELI-EGGLIPGRVYLITGPPGSGKTTLAFHFLLEGARHGEKGLYVSL 63

Query: 96  --------GTCAFVDAEHALDSIYARKLGVDLKNLLI---SQPDTGEQALEITDMLVRSG 144
                      A  D          + +  DL  +L     +  T    L     L  + 
Sbjct: 64  IQKPEDVVKDIAKYDPSIFAYIKTWKIILYDLGPVLWRETEKVPTWSSVLFRIKELSETE 123

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +D +VID V A+           E      AR     L +   +I         I    
Sbjct: 124 KIDRLVIDPVTAI-----------EFSVSNPARK-KAELARFIRAIEDLGITAYLI--GE 169

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           M     +      T G  +  Y   +  + R   I
Sbjct: 170 MTDMDRYTEEHYLTSGVIMMHYFMHKNRMIRAIQI 204


>gi|325972860|ref|YP_004249051.1| DNA repair protein RadA [Spirochaeta sp. Buddy]
 gi|324028098|gb|ADY14857.1| DNA repair protein RadA [Spirochaeta sp. Buddy]
          Length = 450

 Score = 53.3 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 89/254 (35%), Gaps = 17/254 (6%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVS-----SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           GK A++   ++      + V       +G   LD  LG GG  +G  + + G    GK+T
Sbjct: 44  GKRAVISTATKPISLGEVVVDPLFRYETGISELDRVLG-GGVMRGSSILLGGEPGIGKST 102

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L +  + +    G    +V  E +      +     L   L       +  +EI + ++ 
Sbjct: 103 LMIQVLEKCSV-GRKVLYVSGEES--PSQVKLRAQRLGLTLSCIDIFCDTRVEILEKILS 159

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           S   D++VIDS+  L+   EI    G            +    L   + +     +F+  
Sbjct: 160 SAHYDVVVIDSLQTLSSE-EIPSPAGSVNQI-------RYCSTLLVGMCKQLGTSLFLIG 211

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
              K G + G        + + ++  V   +R V ++K++           + +  +   
Sbjct: 212 HVTKEGTLAGPKVIEHLVDTVLYFEQVSSGVRLVRAMKNRFGSVDEIGIFSMNEKGLTPV 271

Query: 263 FKQVEFDIMYGEGI 276
                F I    G 
Sbjct: 272 ANPSSFFITDRSGS 285


>gi|195055951|ref|XP_001994876.1| GH17480 [Drosophila grimshawi]
 gi|193892639|gb|EDV91505.1| GH17480 [Drosophila grimshawi]
          Length = 349

 Score = 53.3 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 74/240 (30%), Gaps = 21/240 (8%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCA 99
             ++ G   LD   G GG     I EI G    GK+ + L      Q        G   A
Sbjct: 86  SRLTFGCSSLDECTG-GGISIRGITEICGASGVGKSQILLQLSISVQLPPRLGGLGKGVA 144

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F+  E    S    ++    +     +       + I         +D  V + ++ L  
Sbjct: 145 FICTEDVFPSRRLLQISKAFEARYPEEQLNFLGNIFIEHQYESQPLLD-CVKNRLSQLLQ 203

Query: 160 RAEIEGDMGESLP---------GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
              I   + +S+            +AR M + +  L S   +  C +V  NQM       
Sbjct: 204 EHSIGLIIIDSVAAIFRLYTDFDDRARDMRRMVHALLSYADKYGCAVVCTNQMTASGQAD 263

Query: 211 FGS-PETTTGGNALKFYSSVRLDIRRV-GSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
             +  +    G         R+ I RV    K  D +     R   +     +P    EF
Sbjct: 264 HNALQDVPCLGLQWSNLGRTRIRISRVPKQYKQGDQLI--TVRKMEILYSPETPNAFAEF 321


>gi|254415359|ref|ZP_05029120.1| KaiA binding family [Microcoleus chthonoplastes PCC 7420]
 gi|196177834|gb|EDX72837.1| KaiA binding family [Microcoleus chthonoplastes PCC 7420]
          Length = 567

 Score = 53.3 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 57/156 (36%), Gaps = 12/156 (7%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +S+G   LD  LG  G+ +G  V I G   +GK++L  H    +   G  C +   E 
Sbjct: 250 ERISTGVERLDTMLGGEGYFRGSSVLISGTAGTGKSSLCAHFAEATCLRGERCLYFAFEE 309

Query: 106 ALDSIY--ARKLGVDLKN--------LLISQPDTG--EQALEITDMLVRSGAVDIIVIDS 153
           +   I    R +G+DL          +   +P     E  L      V     ++++ID 
Sbjct: 310 SPSQIIRNMRSIGIDLDPSVQKGLLKIQAMRPTFYGLEMHLVKIHHFVNEFKPNVVIIDP 369

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           ++ LT            +  +      Q    LT  
Sbjct: 370 ISNLTDIGNYMQVKSFMMRLVDFFKTHQITTVLTHL 405



 Score = 45.2 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 7/105 (6%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL----HTIAQSQKTGGTCA 99
            +    +G  GLD  +  GG P+GR   + G    GKT +A+    H   + Q+ G   +
Sbjct: 8   KLNKCPTGIQGLDE-ITNGGLPQGRPTLLCGKAGCGKTLMAMEFLVHGATEYQEPGVFIS 66

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           F ++   L        G DL  L   +  T    + I    ++  
Sbjct: 67  FEESPDELTQN-VASFGWDLTALADQKKLT-IHYVHIDRTQIQET 109


>gi|119502826|ref|ZP_01624911.1| DNA repair protein [marine gamma proteobacterium HTCC2080]
 gi|119461172|gb|EAW42262.1| DNA repair protein [marine gamma proteobacterium HTCC2080]
          Length = 457

 Score = 53.3 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 60/165 (36%), Gaps = 15/165 (9%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            + + SSG   LD  LG GG   G  + I G   +GK+TL L T+      GG   +V  
Sbjct: 72  DVPLFSSGFTELDRVLG-GGLVPGSAILIGGHPGAGKSTLLLQTLCHLA-AGGAALYVTG 129

Query: 104 EHALDSIYARKLGVD--LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           E +   +  R   +D  +  L +      +  L             ++V+DS+  +   A
Sbjct: 130 EESPQQVAMRADRLDLAVDALQLMAETEVDAILAAA----DEFRPRVMVVDSIQVMHSEA 185

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
                   S     A        +LT    +S  +L+ +  +   
Sbjct: 186 ITSAPGSVSQVRDCAA-------QLTRYAKQSGVVLILVGHVTKD 223


>gi|45190614|ref|NP_984868.1| AER008Wp [Ashbya gossypii ATCC 10895]
 gi|44983593|gb|AAS52692.1| AER008Wp [Ashbya gossypii ATCC 10895]
          Length = 510

 Score = 53.3 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 62/189 (32%), Gaps = 22/189 (11%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---- 94
            S  + ++  ++G +G+D  L  GG     I E++G  SSGK+   +      Q      
Sbjct: 78  ASALKKVQCFTTGDVGIDALLN-GGIYTHGITEVFGESSSGKSQFLMQLSLAVQLPLELD 136

Query: 95  --GGTCAFVDAEHALDSIYARKL----------GVDLKNLLISQPDTGEQALEITDMLVR 142
              G C F+  E  L +     +           V   N+  +  +       I  + + 
Sbjct: 137 GSAGQCVFITTESDLPTKRIESMIKSREIFSAGRVSQSNIFTATCNDWTSQNHILSVQLP 196

Query: 143 ----SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
                     +VI    +   R E+     +        L+ Q  + L     +    +V
Sbjct: 197 ILLERNPNIRLVIIDSISHHLRVELAAKTFQQSLD-NRSLIDQMAQNLLHLSQKHAVAVV 255

Query: 199 FINQMRMKI 207
             NQ+  K 
Sbjct: 256 VANQVGDKP 264


>gi|94497211|ref|ZP_01303783.1| DNA repair protein RadA [Sphingomonas sp. SKA58]
 gi|94423316|gb|EAT08345.1| DNA repair protein RadA [Sphingomonas sp. SKA58]
          Length = 455

 Score = 53.3 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 66/202 (32%), Gaps = 6/202 (2%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
              S+G    D ALG GG   G    I G    GK+TL L   A+    G + A++  E 
Sbjct: 68  PRTSTGIAEFDRALG-GGIVHGSATLIGGDPGIGKSTLLLQAAARIAMRGLSVAYISGEE 126

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           A D +  R   + L    +    +     +I   L       +++IDS+  +        
Sbjct: 127 AADQVRLRAQRLGLGTAPVQLA-SATSVRDILTTLGEGPPPALLIIDSIQTMHSDLIEGA 185

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
               S     ++ + +  ++  +++     +    +    ++            G     
Sbjct: 186 PGTVSQVRASSQELIKFAKQRGTALILVGHVTKDGSIAGPRVLEHMVDTVLAFEGERSHQ 245

Query: 226 YSSVRLDIRRVGSIKDKDSITG 247
           Y  +R    R G         G
Sbjct: 246 YRILRAVKNRFG----GTDEIG 263


>gi|145300515|ref|YP_001143356.1| DNA repair protein RadA [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142853287|gb|ABO91608.1| DNA repair protein RadA [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 454

 Score = 53.3 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 8/144 (5%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I   SSG   LD  LG GG   G  + I G   +GK+TL L T+    +      +V  
Sbjct: 70  EIPRFSSGFKELDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTMCGLAER-MKTLYVTG 127

Query: 104 EHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           E +L  +  R  +LG+    L +    + EQ   I     +     I+VIDS+  +    
Sbjct: 128 EESLQQVAMRAGRLGLPTDKLRMLSETSVEQICIIA----QQEQPQIMVIDSIQVMHVAD 183

Query: 162 EIEGDMGESLPGMQARLMSQALRK 185
                   S     A L+++  ++
Sbjct: 184 VQSSPGSVSQVREAAALLTRYAKQ 207


>gi|312882442|ref|ZP_07742183.1| hypothetical protein VIBC2010_18199 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369842|gb|EFP97353.1| hypothetical protein VIBC2010_18199 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 226

 Score = 53.3 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 9/128 (7%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++ +       L S     + + +  +G   LD  L  GGFPK  ++E+  P   G+  L
Sbjct: 10  EKQW-------LRSGSLNSQELGIHPTGHKKLDSTLN-GGFPKHGVIEVKSPSGIGELRL 61

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L  I  +      C F+     L +     LG++  N+L+  P+  + AL   +  +RS
Sbjct: 62  LLPHIKNT-SQDRLCVFIQPPGYLCTEQLVSLGINANNILLIYPENEQHALWAAEQCLRS 120

Query: 144 GAVDIIVI 151
           GA   +++
Sbjct: 121 GACSNVLL 128


>gi|148695988|gb|EDL27935.1| RAD51 homolog (S. cerevisiae), isoform CRA_a [Mus musculus]
          Length = 265

 Score = 53.3 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 41/132 (31%), Gaps = 15/132 (11%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------G 95
              I  +++GS  LD  L  GG   G I E++G   +GKT +        Q         
Sbjct: 131 RSEIIQITTGSKELDKLL-QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGE 189

Query: 96  GTCAFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           G   ++D E          +           L N+  ++    +   ++           
Sbjct: 190 GKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMVES 249

Query: 148 IIVIDSVAALTP 159
             V+     + P
Sbjct: 250 RYVLSETLNVCP 261


>gi|90192351|gb|ABD91838.1| rad51 [Physarum polycephalum]
          Length = 198

 Score = 52.9 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 15/114 (13%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----- 94
              + I  +++GS  L+  L  GG   G I EI+G   +GKT L        Q       
Sbjct: 86  ENRKEIIQITTGSTELNKLL-DGGIETGSITEIFGEFRTGKTQLCHTLCVTCQLPLADNG 144

Query: 95  -GGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITDM 139
             G   ++D E          +           L N+  ++    +  + +   
Sbjct: 145 GEGKALYIDTEGTFRPERLLAIAEKYGLSGEHVLDNVAYARAYNSDHQMSLLVQ 198


>gi|124027732|ref|YP_001013052.1| ATPase [Hyperthermus butylicus DSM 5456]
 gi|123978426|gb|ABM80707.1| predicted ATPase [Hyperthermus butylicus DSM 5456]
          Length = 274

 Score = 52.9 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
            S    IE + +G  G D  +  GG P+G  V + G   +GKT  ++H IA+  + G   
Sbjct: 2   ASTKPSIERLPTGVPGFDKLI-QGGIPRGFFVAVVGEPGTGKTIFSIHFIAEGIRQGDKN 60

Query: 99  AFVDAEHALDSIYARKL 115
            +V  E   +SI  +  
Sbjct: 61  IYVTTEETRESIIKQAA 77


>gi|254169110|ref|ZP_04875947.1| hypothetical protein ABOONEI_52 [Aciduliprofundum boonei T469]
 gi|197621949|gb|EDY34527.1| hypothetical protein ABOONEI_52 [Aciduliprofundum boonei T469]
          Length = 243

 Score = 52.9 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 15/117 (12%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           + V  +G   LD ALG GGFP+  I  + GP   GKT L++  +A+  + G TC ++   
Sbjct: 16  VSVAPTGIKKLDEALG-GGFPRNGISLVVGPSGIGKTILSMQWLAEGVRNGETCVYISTT 74

Query: 105 HALDSIY-----ARKLGVDLKNLLISQ---------PDTGEQALEITDMLVRSGAVD 147
              +++       + L   +  +             P T E+ L+I   ++     +
Sbjct: 75  LPSEAVIAYYGDMKLLKDAVDKIHWYDMYISPKDLIPFTKEKILKIFHKVMPDFFDE 131


>gi|325263686|ref|ZP_08130420.1| DNA repair protein RadA [Clostridium sp. D5]
 gi|324031395|gb|EGB92676.1| DNA repair protein RadA [Clostridium sp. D5]
          Length = 450

 Score = 52.9 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 65/195 (33%), Gaps = 4/195 (2%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            + +G   LD  LG GG   G +V + G    GK+TL L    Q      +  ++  E +
Sbjct: 68  RILTGIQELDRVLG-GGIVPGSLVLVGGDPGIGKSTLLLQVCQQL-SQNKSILYISGEES 125

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           L  I  R     +     +     E  LE    ++ S   ++++IDS+  +         
Sbjct: 126 LAQIKLRA--NRMGEFKENLKLLCETNLETIKNIIESRRPELVIIDSIQTMYSEEVSSAP 183

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
              S       +  Q  + L  SI     +         ++            G+    Y
Sbjct: 184 GSVSQVRESTNIFMQLAKGLGISIFIVGHVTKEGTVAGPRVLEHMVDTVLYFEGDRHASY 243

Query: 227 SSVRLDIRRVGSIKD 241
             +R    R GS  +
Sbjct: 244 RILRGVKNRFGSTNE 258


>gi|304314595|ref|YP_003849742.1| circadian clock related protein [Methanothermobacter marburgensis
           str. Marburg]
 gi|302588054|gb|ADL58429.1| circadian clock related protein [Methanothermobacter marburgensis
           str. Marburg]
          Length = 237

 Score = 52.9 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 4/110 (3%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + I  + +G  GLD    IGG+P+GR + + G   +GKT +ALH   +S + G    +V
Sbjct: 1   MDAIPRLGTGVKGLDDI--IGGYPQGRSILVTGDAGAGKTIMALHFAIESARKGLKTVYV 58

Query: 102 DAEHALD--SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
             E       I    LG D+  L+ S          I   L  +     I
Sbjct: 59  TTEEDETDLRIQCASLGWDIDELMESGALKIIGLSAIRARLTEAEIHIGI 108


>gi|294891379|ref|XP_002773550.1| structural maintenance of chromosome, putative [Perkinsus marinus
           ATCC 50983]
 gi|239878722|gb|EER05366.1| structural maintenance of chromosome, putative [Perkinsus marinus
           ATCC 50983]
          Length = 952

 Score = 52.9 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 7/95 (7%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ--- 92
           G        +  +S+G   +D  L  GG   G I E++G   SGK+         +Q   
Sbjct: 74  GQYLEQRSSMIRISTGCPSIDALL-RGGVETGSITEVFGESRSGKSQFCHALCVAAQLPV 132

Query: 93  ---KTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
                 G   ++D E          +G     L+ 
Sbjct: 133 SQGGAAGRSLYIDTEGTFRPERLADMGHKWGLLVT 167


>gi|326427309|gb|EGD72879.1| hypothetical protein PTSG_04608 [Salpingoeca sp. ATCC 50818]
          Length = 347

 Score = 52.9 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 40/104 (38%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
             E    VS+G   +D  LG  G P G+I +++G  S+GKT + L   A +   G     
Sbjct: 74  AREEKHSVSTGVHTIDDLLGGRGLPAGKITQLFGRSSTGKTQVCLTAAASAACEGHQVVI 133

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
            D+  +  +   R +     +      D       I  + VR  
Sbjct: 134 FDSNSSYAAERLRDIIEHKADASHQAVDVKSACERIRVVAVRDP 177


>gi|298248415|ref|ZP_06972220.1| KaiA binding protein [Ktedonobacter racemifer DSM 44963]
 gi|297551074|gb|EFH84940.1| KaiA binding protein [Ktedonobacter racemifer DSM 44963]
          Length = 529

 Score = 52.9 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +G   LD+ LG GG PKG +  I GP  SGKTTLA      + + G    F+ A
Sbjct: 23  PTGIPHLDLVLG-GGLPKGALTVILGPPGSGKTTLASQIAFAAAQRGEKVLFLTA 76


>gi|21242420|ref|NP_642002.1| hypothetical protein XAC1671 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21107862|gb|AAM36538.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 505

 Score = 52.9 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 76/209 (36%), Gaps = 5/209 (2%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E V SG   +D  L  GG  +G    + GP  SGKT LAL  +  + + G  C  ++ + 
Sbjct: 253 EPVGSGVERIDALL-HGGPLRGTSTLVTGPAGSGKTNLALQFVVAACERGEHCCVLEFDE 311

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
              ++  R  G+D+            +  ++    V  G     V  SV     R  +  
Sbjct: 312 RTGTLLKRAEGLDMDLRKYMDAG-LLELHQMDPAEVTPGEFAWTVRGSVEERACRILVID 370

Query: 166 DMGESLPGMQAR-LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
            +   L  M     +   + +L S +++S      IN  +  +G M  S           
Sbjct: 371 SLNGYLASMPQEKQLMLQMHELLSYLNQSGVTTFLINPQQGLVGSMATSSTLNV-SYMAD 429

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVK 253
               +R    + G I+   S+  N++   
Sbjct: 430 TVVLLRFFEAK-GRIRKALSVIKNRSGAH 457



 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +++GS GLD  +  GG P  R+  + G   +GKTTLAL  +      G +C +V     
Sbjct: 11  RITTGSTGLDTIV-RGGLPANRLYLLEGQPGAGKTTLALQFLLDGAAKGDSCLYVTLSET 69

Query: 107 LDSIYARKLGVDLK 120
           +D +          
Sbjct: 70  IDELTEVAASHHWS 83


>gi|212703185|ref|ZP_03311313.1| hypothetical protein DESPIG_01227 [Desulfovibrio piger ATCC 29098]
 gi|212673451|gb|EEB33934.1| hypothetical protein DESPIG_01227 [Desulfovibrio piger ATCC 29098]
          Length = 486

 Score = 52.9 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 7/140 (5%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            SG   LD  LG G  P G  + I G    GK+TL L         GG   +   E +L 
Sbjct: 113 PSGIASLDRVLGKGLVP-GAAILIGGEPGIGKSTLLLQVAGLVAAQGGRVLYASGEESLP 171

Query: 109 SI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
            I    ++LG+   NLL     + ++ +   ++        ++V+DSV  ++        
Sbjct: 172 QIKARGQRLGMLHDNLLAMSTSSVDEVIAALEL----APPRLLVVDSVQTMSSVDAEGLP 227

Query: 167 MGESLPGMQARLMSQALRKL 186
              +     +  + +A R+L
Sbjct: 228 GNVNQVRAVSMALLEACRRL 247


>gi|146328979|ref|YP_001209246.1| DNA repair protein RadA [Dichelobacter nodosus VCS1703A]
 gi|146232449|gb|ABQ13427.1| DNA repair protein RadA [Dichelobacter nodosus VCS1703A]
          Length = 454

 Score = 52.9 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 55/295 (18%), Positives = 109/295 (36%), Gaps = 30/295 (10%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++ +L     I + + ++ SG    D  LG GG   G +V I G    GK+TL L  + Q
Sbjct: 58  SVQRL-DAIEIHQDV-ILPSGISEFDRVLG-GGLVHGSVVLIGGDPGIGKSTLLLQAVHQ 114

Query: 91  SQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
                 +C +V  E +   I   A++LG+  +++ +      +  +E+      +    +
Sbjct: 115 LALK-TSCLYVSGEESPRQIALRAQRLGLSQEHIFL----YNQTQVELILATAEAEQPKV 169

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +VIDS+  L            +        + +   +L     +S   +  I  +  +  
Sbjct: 170 LVIDSIQTLFSD-------QLTAAAGSVSQLRECTAQLVRFAKKSGTTIFLIGHVTKEGA 222

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           +             L F S V    R + +IK++     N+  +  + +    P      
Sbjct: 223 IAGPRVLEHMVDTVLYFESEVGSRFRILRAIKNRFGPV-NELGMFAMLDNGLKPVTNPSA 281

Query: 269 DI-----MYGEGI----SFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314
                      G      + G    L    ++VDK+ + +    +RL QG ++S+
Sbjct: 282 LFLSRPEENQAGSVVLPVWEGTRALLVEVQALVDKTNSSY---PRRLTQGLDSSR 333


>gi|257077018|ref|ZP_05571379.1| DNA repair and recombination protein RadB [Ferroplasma acidarmanus
           fer1]
          Length = 240

 Score = 52.9 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 81/228 (35%), Gaps = 28/228 (12%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SG   +D  +  GG   G I E YG   +GK+ LA+     + K G +  ++D+E     
Sbjct: 19  SGYPCIDKLM-EGGLEPGIITEFYGEGGAGKSNLAMIYSISALKNGNSAIYIDSEGFSVE 77

Query: 110 IYARKLGVDLKNLLISQPD----TGEQALE-------ITDMLVRSGAVDIIVIDSVAALT 158
            +      D++ +            +Q L        I +      +  I+V+DS     
Sbjct: 78  RFRSIANGDMELINHMNIYRVKSLDDQYLALIKSDKLIGEKRESKNSFGIMVVDSFTNFF 137

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
                +          +     + L  L+    + K  +V  NQ+   +     S     
Sbjct: 138 RMEAGKDA------SARMEGYEKQLNILSGIALKYKIPVVITNQIYEDVNN---STLEPF 188

Query: 219 GGNALKFY--SSVRLD-----IRRVGSIKDKDSITGNQTRVKVVKNKM 259
           GG  +     +  R++     +RR+   K +    G+ T  ++V + +
Sbjct: 189 GGFFIDHAMKAIYRIEKFSGGMRRITVEKHRSIREGSYTGFRIVDSGI 236


>gi|110349613|gb|ABG73281.1| putative DMC1 protein [Leucoagaricus sp. S16]
          Length = 115

 Score = 52.9 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 12/110 (10%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           EAA   +   +  G            + + ++S+GS  +D  LG GG     I E+YG  
Sbjct: 1   EAAHKILGSSFATGI-----EIQERRKRVHIISTGSKSVDAILG-GGLMSQSITEVYGEF 54

Query: 77  SSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKLGVDLK 120
            +GKT +A      +Q         G  A++D E        R +     
Sbjct: 55  RTGKTQMAHTMSVVAQLPPDLGGAAGKVAYIDTEGTFRPDRIRAIADRFG 104


>gi|167855234|ref|ZP_02478004.1| predicted repair protein [Haemophilus parasuis 29755]
 gi|167853687|gb|EDS24931.1| predicted repair protein [Haemophilus parasuis 29755]
          Length = 458

 Score = 52.9 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 63/166 (37%), Gaps = 10/166 (6%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
            G I +L       + +   SSG   LD  LG GG   G  + I G   +GK+TL L  +
Sbjct: 58  TGKIQRLSEID--LQEVPRFSSGFYELDRVLG-GGIVPGSAILIGGHPGAGKSTLLLQVM 114

Query: 89  AQSQKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
               ++  T  +V  E +L  +  R  +LG+   NL +    + E    +          
Sbjct: 115 CGLSQSVPT-LYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEHICNLA----DQEKP 169

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
            ++VIDS+  +            +     A  +++  +    +I  
Sbjct: 170 KLMVIDSIQVMHLADIQSSPGSVAQVRECAAFLTRYAKTRQVAIIM 215


>gi|308810088|ref|XP_003082353.1| RAD51-like protein 2 (ISS) [Ostreococcus tauri]
 gi|116060821|emb|CAL57299.1| RAD51-like protein 2 (ISS) [Ostreococcus tauri]
          Length = 570

 Score = 52.9 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 53/320 (16%), Positives = 94/320 (29%), Gaps = 69/320 (21%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLG-SQGSIFEGIEVVS---SGSLGLD 56
           +     + + + + AL+AA     R  G+GA ++   S   + E         +    LD
Sbjct: 55  LARESGLTLEEANDALKAA-----RHGGEGAALKGARSAAEVLEDERRRPRTVTCCEALD 109

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCAFVDAEH----- 105
             L  GG   G I E  G    GKT +                T G   +VD E      
Sbjct: 110 DVL-DGGIGSGEITEFCGCPGVGKTQMCTQVCVSASTPEAFGGTDGEAVYVDTEGSFMAD 168

Query: 106 -------------------------------ALDSIYARKLGVDLKNLLISQPDTGEQAL 134
                                          AL+   A K+   +      +       L
Sbjct: 169 RAMDVASALVEHLRRMEACESDSERRTEMKAALEGYTAEKILSGIHLFRCHEVTELLAVL 228

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           E     +       +V+    A   R + +         ++  ++S+   +L S  +   
Sbjct: 229 ETLGEFIAEHPRVRLVVIDSVAFHFRQDFQD------MALRTTILSKMTNRLMSIATSRD 282

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
             +V +NQ+ +K      +      G +     + R+ +              N  RV  
Sbjct: 283 VAVVTVNQVTVKPQQDGPARLVPALGESYAHACTTRVILS-----------WENDERVAF 331

Query: 255 VKNKMASPFKQVEFDIMYGE 274
           V      P  + ++ I  GE
Sbjct: 332 VTKSPRLPQAKAKYTITAGE 351


>gi|27365092|ref|NP_760620.1| DNA repair protein RadA [Vibrio vulnificus CMCP6]
 gi|320155475|ref|YP_004187854.1| DNA repair protein RadA [Vibrio vulnificus MO6-24/O]
 gi|27361238|gb|AAO10147.1| DNA repair protein RadA [Vibrio vulnificus CMCP6]
 gi|319930787|gb|ADV85651.1| DNA repair protein RadA [Vibrio vulnificus MO6-24/O]
          Length = 459

 Score = 52.9 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 66/170 (38%), Gaps = 16/170 (9%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   SSG   LD  LG GG   G  + I G   +GK+TL L T+ Q         +V
Sbjct: 70  LQEVPRFSSGFKELDRVLG-GGIVPGAAILIGGNPGAGKSTLLLQTMCQL-SANMNALYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+  ++L +      ++  ++ + +       I+VIDS+  +  
Sbjct: 128 TGEESLQQVAMRASRLGLPKEHLKMLSETNVDKICQVAEQIQPK----IMVIDSIQVMHV 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
                     +     A  +++          +   + VFI     K G 
Sbjct: 184 SDVQSSPGSVAQVRESATALTRYA--------KQNNVAVFIVGHVTKDGT 225


>gi|37680856|ref|NP_935465.1| DNA repair protein RadA [Vibrio vulnificus YJ016]
 gi|37199605|dbj|BAC95436.1| predicted ATP-dependent serine protease [Vibrio vulnificus YJ016]
          Length = 459

 Score = 52.9 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 66/170 (38%), Gaps = 16/170 (9%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   SSG   LD  LG GG   G  + I G   +GK+TL L T+ Q         +V
Sbjct: 70  LQEVPRFSSGFKELDRVLG-GGIVPGAAILIGGNPGAGKSTLLLQTMCQL-SANMNALYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+  ++L +      ++  ++ + +       I+VIDS+  +  
Sbjct: 128 TGEESLQQVAMRASRLGLPKEHLKMLSETNVDKICQVAEQIQPK----IMVIDSIQVMHV 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
                     +     A  +++          +   + VFI     K G 
Sbjct: 184 SDVQSSPGSVAQVRESATALTRYA--------KQNNVAVFIVGHVTKDGT 225


>gi|117619550|ref|YP_858137.1| DNA repair protein RadA [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117560957|gb|ABK37905.1| DNA repair protein RadA [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 454

 Score = 52.9 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 8/144 (5%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I   SSG   LD  LG GG   G  + I G   +GK+TL L T+    +      +V  
Sbjct: 70  EIPRFSSGFKELDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTMCGLAER-MKTLYVTG 127

Query: 104 EHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           E +L  +  R  +LG+    L +    + EQ   I     +     I+VIDS+  +    
Sbjct: 128 EESLQQVAMRASRLGLPTDKLRMLSETSVEQICLIA----QQEQPQIMVIDSIQVMHVAD 183

Query: 162 EIEGDMGESLPGMQARLMSQALRK 185
                   S     A L+++  ++
Sbjct: 184 VQSAPGSVSQVREAAALLTRYAKQ 207


>gi|311244990|ref|XP_003121661.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Sus scrofa]
          Length = 293

 Score = 52.9 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 78/240 (32%), Gaps = 48/240 (20%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
              I  +++GS  LD  L  G  P    ++  G E                   G   ++
Sbjct: 79  RSEIIQITTGSKELDKLL-QGILP----IDRGGGE-------------------GKAMYI 114

Query: 102 DAEHALDSIYARKL--------GVDLKNLLISQPDTGEQA---LEITDMLVRSGAVDIIV 150
           D E          +           L N+  ++    +     L     ++      +++
Sbjct: 115 DTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLI 174

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG-- 208
           IDS  AL  R +  G    S   M    +++ LR L          +V  NQ+  ++   
Sbjct: 175 IDSATALY-RTDYSGRGELSARQMH---LARFLRMLLRLADEFGVAVVITNQVVAQVDGA 230

Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
            +    P+   GGN +   S+ RL +R      R+  I D   +   +    +  + +  
Sbjct: 231 AMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGD 290


>gi|222618725|gb|EEE54857.1| hypothetical protein OsJ_02328 [Oryza sativa Japonica Group]
          Length = 349

 Score = 52.9 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 61/221 (27%), Gaps = 45/221 (20%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +++GS  L+  LG GG     + EI G    GKT L +      Q        GG   ++
Sbjct: 90  INTGSADLNNILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVEYGGLGGKAVYI 148

Query: 102 DAEHALDSIYARKLGVDL-----------------------------KNLLISQPDTGEQ 132
           D E +       ++                                            EQ
Sbjct: 149 DTEGSFMVERVYQIAEGCISDILEYFPHCHDKAPAGQEKLKPESFLADIYYFRICSYTEQ 208

Query: 133 ALEI--TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
              I   +  +       IVI        R + +         ++ R++S    KL    
Sbjct: 209 IAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFDD------MALRTRVLSGLSLKLMKLS 262

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
                 +V +NQ+  K            G +      + RL
Sbjct: 263 KAYNLAVVLLNQVTTKFTEGSFQLTLALGDS-WSHSCTNRL 302


>gi|218188518|gb|EEC70945.1| hypothetical protein OsI_02540 [Oryza sativa Indica Group]
          Length = 349

 Score = 52.9 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 61/221 (27%), Gaps = 45/221 (20%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +++GS  L+  LG GG     + EI G    GKT L +      Q        GG   ++
Sbjct: 90  INTGSADLNNILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVEYGGLGGKAVYI 148

Query: 102 DAEHALDSIYARKLGVDL-----------------------------KNLLISQPDTGEQ 132
           D E +       ++                                            EQ
Sbjct: 149 DTEGSFMVERVYQIAEGCISDILEYFPHCHDKAPAGQEKLKPESFLADIYYFRICSYTEQ 208

Query: 133 ALEI--TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
              I   +  +       IVI        R + +         ++ R++S    KL    
Sbjct: 209 IAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFDD------MALRTRVLSGLSLKLMKLS 262

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
                 +V +NQ+  K            G +      + RL
Sbjct: 263 KAYNLAVVLLNQVTTKFTEGSFQLTLALGDS-WSHSCTNRL 302


>gi|115437842|ref|NP_001043394.1| Os01g0578000 [Oryza sativa Japonica Group]
 gi|13161340|dbj|BAB32931.1| DNA repair protein radA (radA)-like [Oryza sativa Japonica Group]
 gi|20521295|dbj|BAB91810.1| DNA repair protein radA (radA)-like [Oryza sativa Japonica Group]
 gi|113532925|dbj|BAF05308.1| Os01g0578000 [Oryza sativa Japonica Group]
 gi|215686387|dbj|BAG87648.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 349

 Score = 52.9 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 61/221 (27%), Gaps = 45/221 (20%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +++GS  L+  LG GG     + EI G    GKT L +      Q        GG   ++
Sbjct: 90  INTGSADLNNILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVEYGGLGGKAVYI 148

Query: 102 DAEHALDSIYARKLGVDL-----------------------------KNLLISQPDTGEQ 132
           D E +       ++                                            EQ
Sbjct: 149 DTEGSFMVERVYQIAEGCISDILEYFPHCHDKAPAGQEKLKPESFLADIYYFRICSYTEQ 208

Query: 133 ALEI--TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
              I   +  +       IVI        R + +         ++ R++S    KL    
Sbjct: 209 IAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFDD------MALRTRVLSGLSLKLMKLS 262

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
                 +V +NQ+  K            G +      + RL
Sbjct: 263 KAYNLAVVLLNQVTTKFTEGSFQLTLALGDS-WSHSCTNRL 302


>gi|298715571|emb|CBJ28124.1| rad51 homolog C [Ectocarpus siliculosus]
          Length = 344

 Score = 52.9 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 76/234 (32%), Gaps = 52/234 (22%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           + +    +D  +G GG P+G + E+ G    GKT   +      Q        GG   ++
Sbjct: 39  IITFCREIDGMMG-GGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVGGGALYI 97

Query: 102 DAEHALDSIYARKL-----------------------------------GVDLKNLLISQ 126
           D E +L      +L                                   G+ +  L    
Sbjct: 98  DTEGSLTVERLSQLCSAVVEHLQKIARNKRKQGVPDLESAVPTQEAFLGGIHVWRLHD-H 156

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
            +       + + LV    V ++V+DSVA     A            ++ R++S+  ++L
Sbjct: 157 AEQLAAVRTLPEFLVAHPEVKLVVMDSVAFHFRHAF-------QDMSVRTRMLSRMAQQL 209

Query: 187 TSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGS 238
                     +V +NQM  K+       S      G +    ++ RL +   G 
Sbjct: 210 NEVAQAHSLAVVLVNQMTTKVMTGHRGESSLVPALGESWAHAATNRLLLLWKGQ 263


>gi|209964485|ref|YP_002297400.1| circadian clock protein kinase KaiC, putative [Rhodospirillum
           centenum SW]
 gi|209957951|gb|ACI98587.1| circadian clock protein kinase KaiC, putative [Rhodospirillum
           centenum SW]
          Length = 489

 Score = 52.9 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 3/75 (4%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF--VDAEHAL 107
           SG   LD  LG GG  +G    + GP  +GK+ LAL  I  +   G   A    D E  L
Sbjct: 248 SGEAALDALLG-GGIEQGTSTLLLGPSGTGKSLLALQFIRAAAARGERSAMFVFDEEAGL 306

Query: 108 DSIYARKLGVDLKNL 122
               A+ LG+DL  L
Sbjct: 307 LVTRAQGLGIDLDRL 321



 Score = 40.2 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 3/112 (2%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E+   G  GLD  L  GG  + R+  + G   +GKTT+AL  + +    G  C ++    
Sbjct: 3   EIARFGIRGLDDVLA-GGLVRQRLYLLEGHPGTGKTTVALQFLLEGAARGERCLYITLSE 61

Query: 106 ALDSIYARKL--GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
             + +       G  L   +        +ALE         A D+ ++++  
Sbjct: 62  TEEELRDCAASHGWTLPEAITIFELIPPEALEDAAHQSLVYAADLELVETTR 113


>gi|17944958|gb|AAL48542.1| RE02671p [Drosophila melanogaster]
          Length = 341

 Score = 52.9 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 78/238 (32%), Gaps = 25/238 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCA 99
             VS G   LD   G GG     I E+ G    GKT L L      Q        G   A
Sbjct: 86  SRVSFGCSALDRCTG-GGVVTRGITELCGAAGVGKTELLLQLSLCVQLPRELGGLGKGVA 144

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           ++  E +  +    ++    +             + + +  + +  +   VI+ +  L  
Sbjct: 145 YICTESSFPARRLLQMSKACEKRHPEMELNFLGNIFV-ENHIEAEPLLACVINRIPRLMQ 203

Query: 160 RAEIEGDMGESLPG---------MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +  I   + +S+            +AR M +    L S   +  C +V +NQ+  + G  
Sbjct: 204 QHGIGLIIIDSVAAIFRLYNDYLERARHMRRLADALLSYADKYNCAVVCVNQVATRDG-- 261

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
               E    G         RL + RV     K    G+Q         + SP    +F
Sbjct: 262 --QDEIPCLGLQWAHLGRTRLRVSRVP----KQHRMGDQLITVRKLEILYSPETPNDF 313


>gi|46309523|ref|NP_996959.1| DNA repair protein RAD51 homolog 4 [Danio rerio]
 gi|42542869|gb|AAH66407.1| Zgc:77165 [Danio rerio]
          Length = 327

 Score = 52.9 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 76/255 (29%), Gaps = 37/255 (14%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-GGT 97
             +     ++S+GS  LD  L   G   G I E+ G   SGKT +              T
Sbjct: 73  EELLSSTAILSTGSPSLDKLL-DSGLYTGEITELTGSPGSGKTQVCFSVAVNISHQLKQT 131

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
             ++D +  +           L+ L    P+  EQ   +  + V        ++  +  L
Sbjct: 132 VVYIDTKGGMC------ANRLLQMLQTKTPNEQEQMEALQKIKVFRVFDVFSLLACLQNL 185

Query: 158 TP----RAEIEGDMGESLP----------------GMQARLMSQALRKLTSSISRSKCIL 197
                 +  + G   ++L                      L+ Q   +L          +
Sbjct: 186 RSTGLQKMSVGGGSVKALMVDSVSAVLSPILGGKQNEGMSLLMQVAGELKMIAKDFNIAV 245

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           +  N +         +      G +       R+ ++RV      +    +     + K+
Sbjct: 246 LVTNHVTKDGNGQVKAGL----GLSWSHVPRTRVLLQRVE-----NEEISSLRTATLTKS 296

Query: 258 KMASPFKQVEFDIMY 272
              +     EFD+ +
Sbjct: 297 SRQACHMTKEFDLCH 311


>gi|295691323|ref|YP_003595016.1| non-specific serine/threonine protein kinase [Caulobacter segnis
           ATCC 21756]
 gi|295433226|gb|ADG12398.1| Non-specific serine/threonine protein kinase [Caulobacter segnis
           ATCC 21756]
          Length = 518

 Score = 52.9 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 63/168 (37%), Gaps = 12/168 (7%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
               + FE  E+VS+GS G+D  LG GG  +G    I GP   GKTT A+     + + G
Sbjct: 257 ADHTAAFEH-EMVSTGSPGIDALLG-GGLTRGTNTLISGPSGVGKTTTAVRCALTALQRG 314

Query: 96  GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
              A+   +  L  + AR   + +      +P      L I             +     
Sbjct: 315 ERVAYYLFDEGLAILLARSASLGMDL----RPHLDSGQLII------RSIDPAELSPGEF 364

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           A   R  +E D   ++         QA+      + +   +L ++NQ 
Sbjct: 365 AFHVREAVERDRARTVVIDSLNAYLQAMPGQKFLLLQMHELLTYLNQQ 412



 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 3/78 (3%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+G  GLD  LG GG  + RI  + G   SGKTTLAL  + + ++ G +  ++     
Sbjct: 27  RVSTGVSGLDDILG-GGLTRDRIYLVEGTPGSGKTTLALQFLLKGRELGESGLYITLSET 85

Query: 107 LDSIYARKL--GVDLKNL 122
              + A     G  L  +
Sbjct: 86  EAELRAAAASHGWSLDGI 103


>gi|302879075|ref|YP_003847639.1| DNA repair protein RadA [Gallionella capsiferriformans ES-2]
 gi|302581864|gb|ADL55875.1| DNA repair protein RadA [Gallionella capsiferriformans ES-2]
          Length = 452

 Score = 52.9 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 58/152 (38%), Gaps = 8/152 (5%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
             E +  + +G    D  LG GG   G +V I G    GK+TL L  +A          +
Sbjct: 64  AAEEMPRIPTGIEEFDRVLG-GGLVSGAVVLIGGDPGIGKSTLLLQVLAHLSMQ-HNTLY 121

Query: 101 VDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           V  E +   I   A++L +D +NL +         LE     + +    ++VIDS+  + 
Sbjct: 122 VSGEESAQQIALRAKRLALDAQNLRLLPEI----QLEKIQATIAANKPSVVVIDSIQTVY 177

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
                      +     A  +++  +    +I
Sbjct: 178 SEQLTSAPGSVAQVRECAAQLTRIAKSQNITI 209


>gi|237823442|pdb|2W0M|A Chain A, Crystal Structure Of Sso2452 From Sulfolobus Solfataricus
           P2
          Length = 235

 Score = 52.9 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 71/179 (39%), Gaps = 11/179 (6%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +  +S+G L  D  +  GG P+G  + + G   +GKT  +LH IA+  + G  C +V  E
Sbjct: 2   VSRLSTGILDFDKLI-QGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
            + DSI  +      K       +  E+ L I D L++          S+  LTP  E+ 
Sbjct: 61  ESRDSIIRQA-----KQFNWDFEEYIEKKLIIIDALMKEKEDQW----SLVNLTPE-ELV 110

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
             + E+   +        +  +++       +   I+    ++   +      T   A+
Sbjct: 111 NKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAI 169


>gi|189237371|ref|XP_971150.2| PREDICTED: similar to GA17378-PA [Tribolium castaneum]
          Length = 272

 Score = 52.9 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 64/211 (30%), Gaps = 21/211 (9%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAF 100
            +S+G   +D A+  GG    RI EI G    GKT L L     +Q        G +  +
Sbjct: 36  RISTGCSAID-AITRGGIAVNRISEIVGYAGVGKTQLCLQLSLMAQLPISLGGLGKSVVY 94

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI-------IVIDS 153
           +  E A      + L +             E  + I  +                +++  
Sbjct: 95  LCTEDAFPIKRLKDLAITYSLKYHDLGINFEDNIFIEHLADVEQLKKCLSNSLTKLLLVK 154

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQ----ALRKLTSSISRSKCILVFINQMRMKIGV 209
              L     I G        +  +  +Q     +  L     +    +V +NQ+      
Sbjct: 155 NVGLVVIDSIAGIFRSETLDVNYKNRNQDFILIVTLLNKLAKKYGFAVVCVNQVTDNPTT 214

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
              +      G A     + R +I R  + K
Sbjct: 215 ---NVTEPCLGLAWSNCLTYRFNINRFVNTK 242


>gi|270008164|gb|EFA04612.1| spindle B [Tribolium castaneum]
          Length = 274

 Score = 52.9 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 64/211 (30%), Gaps = 21/211 (9%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAF 100
            +S+G   +D A+  GG    RI EI G    GKT L L     +Q        G +  +
Sbjct: 38  RISTGCSAID-AITRGGIAVNRISEIVGYAGVGKTQLCLQLSLMAQLPISLGGLGKSVVY 96

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI-------IVIDS 153
           +  E A      + L +             E  + I  +                +++  
Sbjct: 97  LCTEDAFPIKRLKDLAITYSLKYHDLGINFEDNIFIEHLADVEQLKKCLSNSLTKLLLVK 156

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQ----ALRKLTSSISRSKCILVFINQMRMKIGV 209
              L     I G        +  +  +Q     +  L     +    +V +NQ+      
Sbjct: 157 NVGLVVIDSIAGIFRSETLDVNYKNRNQDFILIVTLLNKLAKKYGFAVVCVNQVTDNPTT 216

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
              +      G A     + R +I R  + K
Sbjct: 217 ---NVTEPCLGLAWSNCLTYRFNINRFVNTK 244


>gi|24650551|ref|NP_733200.1| spindle D [Drosophila melanogaster]
 gi|17945461|gb|AAL48784.1| RE19845p [Drosophila melanogaster]
 gi|23180023|gb|AAN14399.1| spindle D [Drosophila melanogaster]
 gi|30060286|gb|AAP13056.1| spindle D [Drosophila melanogaster]
 gi|220948130|gb|ACL86608.1| spn-D-PA [synthetic construct]
 gi|220957374|gb|ACL91230.1| spn-D-PA [synthetic construct]
          Length = 270

 Score = 52.9 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 66/220 (30%), Gaps = 39/220 (17%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           + +G   LD   G GG   G +VE+ G   +GKT + L      Q         G+  F+
Sbjct: 46  ILTGKKALDTHFG-GGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFI 104

Query: 102 DAEHALDSIYARKLGVDLKN-----------------LLISQPDTGEQALEITDML---- 140
           D            L + L+                  +   +    +Q +          
Sbjct: 105 DTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKMLQKIHYVRCPKLDQLMATVLSCHRHL 164

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS-QALRKLTSSISRSKCILVF 199
           V    + +IVIDS+A      E      E L  +   +   Q   +LT          VF
Sbjct: 165 VDHPDIKLIVIDSLAFTLRMLEDGAHRYEMLLELHESMRRLQRQHELTW---------VF 215

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
            N +  +        E   G +      + R+       +
Sbjct: 216 TNVLTHRYVKQKFQVEPALG-DLHSHLINERIWFSGSSEL 254


>gi|297566582|ref|YP_003685554.1| DNA repair protein RadA [Meiothermus silvanus DSM 9946]
 gi|296851031|gb|ADH64046.1| DNA repair protein RadA [Meiothermus silvanus DSM 9946]
          Length = 434

 Score = 52.9 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 6/130 (4%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           G G I++L    +  E  E  SSG   LD  LG GGF KG ++ + G    GK+T+ L  
Sbjct: 54  GGGRIVRLRDASANLE--ERFSSGLGELDRVLG-GGFVKGEVLLVGGEPGVGKSTILLQV 110

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
             Q  + G    ++  E +   I  R   + +     S     E  LE    L+     D
Sbjct: 111 AHQMLEQGKRVLYLAGEESPGQIRLRAQRLGVDE---SLELLRETHLEAILNLLEVERPD 167

Query: 148 IIVIDSVAAL 157
            +++DSV  L
Sbjct: 168 FLIVDSVQTL 177


>gi|170740815|ref|YP_001769470.1| DNA repair protein RadA [Methylobacterium sp. 4-46]
 gi|168195089|gb|ACA17036.1| DNA repair protein RadA [Methylobacterium sp. 4-46]
          Length = 477

 Score = 52.9 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 67/217 (30%), Gaps = 16/217 (7%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG +  L       +      SG   LD   G GGF +G ++ + G    GK+TL +   
Sbjct: 55  KGRVFPLEGLAGEVKDAPRTPSGIAELDRVTG-GGFVRGSVILLGGDPGIGKSTLLMQAS 113

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A     G   A++  E A+  +  R   + L    +          +I   L +     +
Sbjct: 114 AALAARGERVAYISGEEAVGQVRLRAERLGLAGAPVELAA-ETNVEDIVATLSQGRPPAL 172

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK-- 206
            +IDS+  +            +     A+        L      S   ++ +  +     
Sbjct: 173 AIIDSIQTMWTETVESAPGTVTQVRGSAQS-------LIRFAKTSGTAVILVGHVTKDGQ 225

Query: 207 -----IGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
                +         +  G+    +  +R    R G 
Sbjct: 226 IAGPRVVEHMVDAVASFEGDQGHHFRILRAVKNRFGP 262


>gi|150377661|ref|YP_001314256.1| non-specific serine/threonine protein kinase [Sinorhizobium medicae
           WSM419]
 gi|150032208|gb|ABR64323.1| Non-specific serine/threonine protein kinase [Sinorhizobium medicae
           WSM419]
          Length = 500

 Score = 52.5 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 3/80 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA--FVDAEH 105
           VSSG   +D  LG GG  +G    + GP  +GK+T AL  +A +   G   A    D E 
Sbjct: 251 VSSGIAEVDELLG-GGVERGSSTLVLGPAGTGKSTFALQFLAAAIGRGEKAAAFIFDEEL 309

Query: 106 ALDSIYARKLGVDLKNLLIS 125
            L     + +G+DL+ +  S
Sbjct: 310 GLLFTRMKTMGIDLEAMRAS 329



 Score = 41.0 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           G  GLD  L +GG  +G +  + G   SGKTT+AL  + +    G  C ++        +
Sbjct: 12  GVGGLDDIL-VGGLSRGHVFLLEGTPGSGKTTIALQYMIEGAAQGEKCLYITLSETEQEL 70

Query: 111 YARKLG 116
                 
Sbjct: 71  RDGAAS 76


>gi|330255440|gb|AEC10534.1| DNA repair protein RAD51-like 3 [Arabidopsis thaliana]
          Length = 387

 Score = 52.5 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 68/226 (30%), Gaps = 45/226 (19%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGG 96
           E +  +++    LD  LG GG     + EI G    GKT + +      Q        GG
Sbjct: 124 ESLPRITTSCSDLDNILG-GGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPRECGGLGG 182

Query: 97  TCAFVDAEHALDSIYARKLG----------------------------VDLKNLLISQPD 128
              ++D E +     A ++                               L+N+   +  
Sbjct: 183 KAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIFYFRVC 242

Query: 129 TGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           +  + + +    +  +       +VI        R + +          + R++S+   K
Sbjct: 243 SYTEQIALVNHLEKFISENKDVKVVIVDSITFHFRQDYDD------LAQRTRVLSEMALK 296

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
                 +    +V +NQ+  K            G +      + R+
Sbjct: 297 FMKLAKKFSLAVVLLNQVTTKFSEGSFQLALALGDS-WSHSCTNRV 341


>gi|183233498|ref|XP_654218.2| DNA repair protein RAD51C [Entamoeba histolytica HM-1:IMSS]
 gi|169801545|gb|EAL48832.2| DNA repair protein RAD51C, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 283

 Score = 52.5 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 83/237 (35%), Gaps = 41/237 (17%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
            KEMN  ++ K     + Q++    K  +     +    + +  + + +  +D  L  GG
Sbjct: 6   DKEMNKSNELK-----IKQMKTKTLKELV-----EEVKEKKVRNIPTFNQEIDQFLN-GG 54

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKT---GGT---CAFVDAE------------- 104
              G I +I G   SGK+ L +      Q     GG    C + D+              
Sbjct: 55  ISLGEITQIVGFPGSGKSQLCMQIACNVQLPEEIGGLNSECIYYDSYSQFCISRVQRMAE 114

Query: 105 --HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS-GAVDIIVIDSVAALTPRA 161
              A    Y   +   L+ + + QP            +      V +I+IDS+     +A
Sbjct: 115 CICASYPEYKLNVKEILEKIHVYQPHDIVSLCSSLLSINNKLNKVKVIIIDSIPTFYKKA 174

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM-KIGVMFGSPETT 217
                +       +   + + ++ L+   ++    +V +N +   KI   + S + T
Sbjct: 175 MCNDTI-------RLAALHRIIQILSIYSNKYYLSVVIVNHLTTKKINSNYTSIDYT 224


>gi|260589118|ref|ZP_05855031.1| DNA repair protein RadA [Blautia hansenii DSM 20583]
 gi|260540538|gb|EEX21107.1| DNA repair protein RadA [Blautia hansenii DSM 20583]
          Length = 456

 Score = 52.5 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 64/194 (32%), Gaps = 18/194 (9%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + + +    LD  LG GG   G +V + G    GK+TL L    Q    G    +V  E 
Sbjct: 72  DRIKTEIEELDRVLG-GGIVPGSMVLVGGDPGIGKSTLLLQVCRQLTGKGHKVLYVSGEE 130

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +L  I  R     +     +     E  LE    ++     +++VIDS+  +        
Sbjct: 131 SLGQIKLRA--KRIGEFNENLLLLCETNLENIRSVIEKVKPEMVVIDSIQTMYNEEVSSA 188

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
               S       ++ Q        I++   I VFI     K G +        G   L+ 
Sbjct: 189 PGSVSQVRESTGVLMQ--------IAKGMGISVFIVGHVTKDGSV-------AGPRVLEH 233

Query: 226 YSSVRLDIRRVGSI 239
                L       +
Sbjct: 234 MVDTVLYFEGDRQV 247


>gi|254168598|ref|ZP_04875441.1| hypothetical protein ABOONEI_1290 [Aciduliprofundum boonei T469]
 gi|197622432|gb|EDY35004.1| hypothetical protein ABOONEI_1290 [Aciduliprofundum boonei T469]
          Length = 243

 Score = 52.5 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 86/219 (39%), Gaps = 36/219 (16%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           + V  +G   LD ALG GGFP+  I  + GP   GKT L++  +A+  + G TC ++   
Sbjct: 16  VSVAPTGIKKLDEALG-GGFPRNGISLVVGPSGIGKTILSVQWLAEGVRNGETCVYISTT 74

Query: 105 HALDSIY-----ARKLGVDLKNLLISQ---------PDTGEQALEITDMLVR-------- 142
              +++       + L   +  +             P T E+ L+I   ++         
Sbjct: 75  LPSEAVIAYYGDMKLLKDAVDKIHWYDMYISPKDLIPFTKEKILKIFHKVMPDFFDEQLN 134

Query: 143 -SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
               +D +V+DS   LT   +I GD+         R +     +       S  ++  ++
Sbjct: 135 LKKPIDRLVLDS---LTTIEKIVGDISM------FRYLGATWIRFFHDNKISTMLIEEMD 185

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           +   K+G M    E T     + F     + +R +  +K
Sbjct: 186 EDGKKMGEMRNFSEATI---LMDFMEHQNMHMRALKIVK 221


>gi|162450010|ref|YP_001612377.1| recA recombinase-like protein [Sorangium cellulosum 'So ce 56']
 gi|161160592|emb|CAN91897.1| recA recombinase homolog [Sorangium cellulosum 'So ce 56']
          Length = 269

 Score = 52.5 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 12/118 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK-TTLALHTIAQSQ----------KT 94
           + +  G   ++ AL  GG P+G +VE+  P   G+ T+LAL   A +Q            
Sbjct: 30  KTLPLGLREINDALPEGGLPRGGVVELAAPRGLGRSTSLALSACASAQAEARLRGTSATA 89

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           G  CA++D   +L +    +  VDL  LL+ +P       ++   +  S A  ++VID
Sbjct: 90  GAWCAWIDPSGSLYAPAVARAQVDLSRLLVVRPPPEV-LAKVAVRMAMSRAFAVLVID 146


>gi|119720050|ref|YP_920545.1| putative circadian clock protein, KaiC [Thermofilum pendens Hrk 5]
 gi|119525170|gb|ABL78542.1| putative circadian clock protein, KaiC [Thermofilum pendens Hrk 5]
          Length = 265

 Score = 52.5 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 85/254 (33%), Gaps = 17/254 (6%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+G  GLD  L  GG P+G  V + G   +GKT   LH +    K G +  +V  E +
Sbjct: 5   RLSTGVAGLDKLLA-GGVPEGFFVALVGMPGTGKTIACLHFVWAGLKAGESAIYVTTEES 63

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA--ALTPRAEIE 164
            +SI  +     +      +       L I D L+R    + ++ +      L+   E +
Sbjct: 64  RESIVRQAAQFGMD----FEGAQKSGRLIIIDALMREKEDEWMMRELAVEEMLSRVIEAK 119

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISR-SKCILVFINQMRMKIGVMFGSPETTT---GG 220
             +G S   +    MS    +        S  +   +N+    I        TT    G 
Sbjct: 120 KRLGRSARRLVIDSMSAFWLRAPVKAREDSYTVKRILNKWGFTIYATSQYAITTGSAFGW 179

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
                   +    RRV            +  +     +     +  E  I   EG++   
Sbjct: 180 GIEHVADGIIHFKRRV------VDGVLTRYIIVEKMRQTPHDLRAWEIQIRDKEGLTLVR 233

Query: 281 ELIDLGVKASIVDK 294
            L       S+ +K
Sbjct: 234 PLARRLEDESLPEK 247


>gi|206889960|ref|YP_002249353.1| DNA repair protein RadA [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206741898|gb|ACI20955.1| DNA repair protein RadA [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 458

 Score = 52.5 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 50/134 (37%), Gaps = 3/134 (2%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + +S+G   LD  LG GG  +G +V I G    GK+TL L       K  G   +V  E 
Sbjct: 73  DRLSTGISELDRVLG-GGVVRGSLVLIGGDPGIGKSTLLLQATDNLAKKYGRVLYVSGEE 131

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +L  I  R     L  +  +     E  +E          ++ +V+DS+  +     +  
Sbjct: 132 SLTQIKLRA--ERLGAISENILLLSETLVEKILDWASEEELNALVVDSIQTVYTEEAMSA 189

Query: 166 DMGESLPGMQARLM 179
               S     A   
Sbjct: 190 PGSVSQIRESATKF 203


>gi|289423036|ref|ZP_06424854.1| DNA repair protein RadA [Peptostreptococcus anaerobius 653-L]
 gi|289156547|gb|EFD05194.1| DNA repair protein RadA [Peptostreptococcus anaerobius 653-L]
          Length = 463

 Score = 52.5 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 84/210 (40%), Gaps = 25/210 (11%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +  KE  I  K +AL A++    +        ++ S  S  E  E  S+    LD  LG 
Sbjct: 41  ETPKEKAI--KERALRASIKTDTKPV------KINSIQSHRE--ERFSTMIPELDRVLG- 89

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YARKLGVDL 119
           GG     ++ + G    GK+TL L       ++G    +V  E + + I   A++LGVD 
Sbjct: 90  GGIIPASLILVGGDPGIGKSTLLLQVSNNIARSGKKLLYVSGEESENQIKMRAKRLGVDS 149

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
            NL I      E  L   +  +     D IV+DS+  +    EI    G           
Sbjct: 150 DNLYI----YTENNLAAIESQIDDIKPDAIVVDSIQTMIS-PEINAAPG--TVSQIKEGT 202

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGV 209
           S+ +     +IS+SK I  FI     K G 
Sbjct: 203 SKFM-----NISKSKGISTFIVGHVTKEGS 227


>gi|148556991|ref|YP_001264573.1| DNA repair protein RadA [Sphingomonas wittichii RW1]
 gi|148502181|gb|ABQ70435.1| DNA repair protein RadA [Sphingomonas wittichii RW1]
          Length = 455

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 72/222 (32%), Gaps = 7/222 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           ++G    D ALG GG   G    I G    GK+TL L   A+    G   A++  E A D
Sbjct: 72  TTGIAEFDRALG-GGLVPGSATLIGGDPGIGKSTLLLQASARMAMAGQPVAYISGEEAAD 130

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +  R   + L    +         +      +      ++VIDS+  +           
Sbjct: 131 QVRLRARRLGLGQAPVQLASATS--VRDILTTLEKAPPSLLVIDSIQTMHSDLIEGAPGT 188

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
            S     A+ + +  ++  +++     +    +    ++         +  G     Y  
Sbjct: 189 VSQVRASAQELIRFAKERGTAVVLVGHVTKDGSIAGPRVLEHMVDTVLSFEGERSHQYRI 248

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           +R    R G         G     +   +++A+P      D 
Sbjct: 249 LRAAKNRFG----GTDEIGVFAMAEAGLDEVANPSTLFLTDR 286


>gi|289595711|ref|YP_003482407.1| hypothetical protein Aboo_0033 [Aciduliprofundum boonei T469]
 gi|289533498|gb|ADD07845.1| conserved hypothetical protein [Aciduliprofundum boonei T469]
          Length = 230

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 86/219 (39%), Gaps = 36/219 (16%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           + V  +G   LD ALG GGFP+  I  + GP   GKT L++  +A+  + G TC ++   
Sbjct: 3   VSVAPTGIKKLDEALG-GGFPRNGISLVVGPSGIGKTILSVQWLAEGVRNGETCVYISTT 61

Query: 105 HALDSIY-----ARKLGVDLKNLLISQ---------PDTGEQALEITDMLVR-------- 142
              +++       + L   +  +             P T E+ L+I   ++         
Sbjct: 62  LPSEAVIAYYGDMKLLKDAVDKIHWYDMYISPKDLIPFTKEKILKIFHKVMPDFFDEQLN 121

Query: 143 -SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
               +D +V+DS   LT   +I GD+         R +     +       S  ++  ++
Sbjct: 122 LKKPIDRLVLDS---LTTIEKIVGDISM------FRYLGATWIRFFHDNKISTMLIEEMD 172

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           +   K+G M    E T     + F     + +R +  +K
Sbjct: 173 EDGKKMGEMRNFSEATI---LMDFMEHQNMHMRALKIVK 208


>gi|284162501|ref|YP_003401124.1| DNA repair and recombination protein RadA [Archaeoglobus profundus
           DSM 5631]
 gi|284012498|gb|ADB58451.1| DNA repair and recombination protein RadA [Archaeoglobus profundus
           DSM 5631]
          Length = 805

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 68/212 (32%), Gaps = 33/212 (15%)

Query: 79  GKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKLGV--------DLKNLLI 124
             T +        Q         G+   +D E         ++           LKN+ +
Sbjct: 597 HNTQICHQLAVNVQLPRDKGGLEGSVIVIDTEKTFRPERIIQMAEAKGLDGKEVLKNIYV 656

Query: 125 SQPDTGEQALEITD---------MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           +        + + D                V ++++DS+ +   RAE  G         +
Sbjct: 657 AHAYNSNHQMLLVDNAKELAKKLAKEGKPPVRLLIVDSLTSHF-RAEYVGRGA---LADR 712

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR- 234
            + +++ L  L          +V  NQ+  K    +G P    GG+ +   ++ R+ +R 
Sbjct: 713 QQKLNRHLHDLMRFGEIFNAAVVVTNQVMAKPDTFYGDPTRPIGGHIVAHTATYRVYLRK 772

Query: 235 -----RVGSIKDKDSITGNQTRVKVVKNKMAS 261
                RV  + D   +   +   K+ +  +  
Sbjct: 773 GKGDLRVARLIDSPHLPEAEVVFKITEKGIED 804



 Score = 40.6 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
            + I  +++GS  LD  LG GG     I E +G   SGK
Sbjct: 82  RQEIGKITTGSNALDNLLG-GGVETQAITEFFGEFGSGK 119


>gi|255282674|ref|ZP_05347229.1| DNA repair protein RadA [Bryantella formatexigens DSM 14469]
 gi|255266695|gb|EET59900.1| DNA repair protein RadA [Bryantella formatexigens DSM 14469]
          Length = 469

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 7/144 (4%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           +  E  SSG   LD  LG GG   G ++ + G    GK+TL L           T  ++ 
Sbjct: 70  DESERTSSGMAELDRVLG-GGIVSGSLILVGGDPGIGKSTLLLQVCRDLVNRKHTVLYIS 128

Query: 103 AEHALDS--IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
            E +     + A+++G   + L++      +   E+     +    + +VIDS+  +   
Sbjct: 129 GEESARQLKLRAQRVGRFEEELMVLCETNLDTICEVL----QRQKPEFVVIDSIQTMYSE 184

Query: 161 AEIEGDMGESLPGMQARLMSQALR 184
                    S       +  Q  +
Sbjct: 185 EVASAPGSVSQVRQATGVFMQIAK 208


>gi|209946400|gb|ACI97431.1| spindle B [Drosophila melanogaster]
          Length = 341

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 69/206 (33%), Gaps = 21/206 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCA 99
             VS G   LD   G GG     I E+ G    GKT L L      Q        G   A
Sbjct: 86  SRVSFGCSALDRCTG-GGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVA 144

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           ++  E +  +    ++    +             + + +  + +  +   VI+ +  L  
Sbjct: 145 YICTESSFPARRLLQMSKACEKRHPEMELNFLGNIFV-ENHIEAEPLLACVINRIPRLMQ 203

Query: 160 RAEIEGDMGESLPG---------MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +  I   + +S+            +AR M +    L S   +  C +V +NQ+  + G  
Sbjct: 204 QHGIGLIIIDSVAAIFRLYNDYLERARHMRRLADALLSYADKYNCAVVCVNQVATRDG-- 261

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRV 236
               E    G         RL + RV
Sbjct: 262 --QDEIPCLGLQWAHLGRTRLRVSRV 285


>gi|209946394|gb|ACI97428.1| spindle B [Drosophila melanogaster]
          Length = 404

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 69/206 (33%), Gaps = 21/206 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCA 99
             VS G   LD   G GG     I E+ G    GKT L L      Q        G   A
Sbjct: 86  SRVSFGCSALDRCTG-GGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVA 144

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           ++  E +  +    ++    +             + + +  + +  +   VI+ +  L  
Sbjct: 145 YICTESSFPARRLLQMSKACEKRHPEMELNFLGNIFV-ENHIEAEPLLACVINRIPRLMQ 203

Query: 160 RAEIEGDMGESLPG---------MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +  I   + +S+            +AR M +    L S   +  C +V +NQ+  + G  
Sbjct: 204 QHGIGLIIIDSVAAIFRLYNDYLERARHMRRLADALLSYADKYNCAVVCVNQVATRDG-- 261

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRV 236
               E    G         RL + RV
Sbjct: 262 --QDEIPCLGLQWAHLGRTRLRVSRV 285


>gi|198430399|ref|XP_002128226.1| PREDICTED: similar to RAD51-like 3 (S. cerevisiae) [Ciona
           intestinalis]
          Length = 328

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 71/216 (32%), Gaps = 27/216 (12%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA-LHTIAQSQKTGGTC 98
                + V+ +G   LD  L   G   G + EI GP SSGKT L     +  +       
Sbjct: 74  ETMGTLAVLPTGCESLDDLL-DAGIYTGEVTEIVGPSSSGKTQLCETFAVNVAASFDQNV 132

Query: 99  AFVDAEHALD-----SIYARKLGVD-----LKNLLISQPDTGEQALEITDMLVRSGAVD- 147
            ++D            I+ ++         L  + +S+     +  E  D++ R  +   
Sbjct: 133 IYIDTAGGFSAVRVGEIFKKRFSSHNTSATLSRIRVSRCFEVSELRETLDLVRRKMSAQD 192

Query: 148 --------IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
                   +++IDSV +L       G   E         +    R+L +        +V 
Sbjct: 193 ETFFSSLKVVIIDSVTSLLSTVLYNGTFVE-----GMASLQSIGRQLNALAKDFALAVVI 247

Query: 200 INQMRMKIGVMFGSPETTTG-GNALKFYSSVRLDIR 234
            N M        G        G    F  SVR+ ++
Sbjct: 248 TNDMVTGPQDKTGQFSRKPALGRVWTFVPSVRVQLQ 283


>gi|73670560|ref|YP_306575.1| hypothetical protein Mbar_A3108 [Methanosarcina barkeri str.
           Fusaro]
 gi|72397722|gb|AAZ71995.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 235

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 63/187 (33%), Gaps = 12/187 (6%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E VS+G   LD  L  GG+P  ++  I G   SGKT   +H + ++   G  C  +  E
Sbjct: 1   MERVSTGIEDLDRKLS-GGYPANKVTLITGIAGSGKTIFGIHFVYKNCLEGRKCMIIATE 59

Query: 105 HALDSIYARK--LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            + + I  +   LG DL +   +     +   E    ++R              +    E
Sbjct: 60  ESPEDILYQASMLGRDLTSYYENGQLIIQNIFESRSEIIRQTRYGFKPESLELEIPSLIE 119

Query: 163 I---------EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           +           ++G     +  + +      L   + +  C  + I            +
Sbjct: 120 LIHEGTECLVIDNIGTFALRISIKKLRDQFDALNYMVRKKGCTALLIMDDSAHKMTYQLA 179

Query: 214 PETTTGG 220
             +  G 
Sbjct: 180 EYSVYGS 186


>gi|51894263|ref|YP_076954.1| DNA repair protein RadA [Symbiobacterium thermophilum IAM 14863]
 gi|51857952|dbj|BAD42110.1| DNA repair protein [Symbiobacterium thermophilum IAM 14863]
          Length = 456

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 93/256 (36%), Gaps = 29/256 (11%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E  + + +G   LD  LG GG   G  V + G    GK+TL L   A   +  GT  +  
Sbjct: 66  EDAQRLETGMDELDRVLG-GGIVPGSFVLVGGDPGIGKSTLLLQLAAGVARQHGTVLYAS 124

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E +   I  R     L  +        E  LE         A  ++++DS+  +  R +
Sbjct: 125 GEESARQIRMRA--DRLGTIHPRLLVLAETNLEAIAHHAAQVAPRLLIVDSIQTVF-RPD 181

Query: 163 IEGDMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
           +    G  S     A  + +        +++ + + +FI     K G + G        +
Sbjct: 182 LPSAPGSVSQVRECAAQLLR--------VAKGQNLAIFIVGHVTKEGSLAGPRVLEHIVD 233

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE 281
            + ++   R    R+               ++ VKN+  S  +   F++    G++  G 
Sbjct: 234 TVLYFEGDRHASFRI---------------LRAVKNRFGSTNEIGIFEMR-DAGLAPVGN 277

Query: 282 LIDLGVKASIVDKSGA 297
              L +    V+ +G+
Sbjct: 278 ASQLFLAERPVEVAGS 293


>gi|239813270|ref|YP_002942180.1| DNA repair protein RadA [Variovorax paradoxus S110]
 gi|239799847|gb|ACS16914.1| DNA repair protein RadA [Variovorax paradoxus S110]
          Length = 462

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 74/217 (34%), Gaps = 15/217 (6%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +    +G   LD  LG GG   G +  I G    GK+TL L  +   Q+ G    +V  
Sbjct: 71  DVARTPTGLDELDRVLG-GGIVSGGVTLIGGDPGIGKSTLLLQAVDALQRAGQNALYVTG 129

Query: 104 EH--ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           E   A  ++ +R+LG+D   + +         LE     + +    I VIDS+  +    
Sbjct: 130 EESGAQVALRSRRLGLDHSQVQVLAEI----QLEKIIATLDATRPAIAVIDSIQTVYSDQ 185

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
                   +     A         LT     S   +V +  +  +  +            
Sbjct: 186 LTSAPGSVAQVRECAAH-------LTRFAKTSGTAVVLVGHVTKEGALAGPRVLEHMVDT 238

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
            L F        R V +IK++     N+  V  +  +
Sbjct: 239 VLYFEGDTHSSFRLVRAIKNRFGAV-NEIGVFAMTER 274


>gi|284162464|ref|YP_003401087.1| circadian clock protein, KaiC [Archaeoglobus profundus DSM 5631]
 gi|284012461|gb|ADB58414.1| putative circadian clock protein, KaiC [Archaeoglobus profundus DSM
           5631]
          Length = 444

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 57/156 (36%), Gaps = 11/156 (7%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E V++G   LD+ L  GGF KG I  I G   +GKTT  LH +  +   G    FV  E 
Sbjct: 228 ERVTTGIAKLDV-LTDGGFYKGSITVIAGQTGTGKTTFGLHFVYTNALRGHRAVFVTLEE 286

Query: 106 ALDSI------YARKLGVDLKNLLISQPDTGEQA----LEITDMLVRSGAVDIIVIDSVA 155
           ++  I      Y  K       L I       ++          ++ +     +VIDS  
Sbjct: 287 SVGDILRSMNNYGMKYESVKDRLNIISIVPESESPVSIFVKLKEIIENEKPVALVIDSYT 346

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           AL    +             A   +Q    LT ++ 
Sbjct: 347 ALEEHMDRVELSKMVRYLQLAVKNNQIATILTMNME 382



 Score = 39.1 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 12/119 (10%)

Query: 53  LGLDIALGI---GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
              D  L     GGFP+G ++ I G   +GKTTL         K G    FV      + 
Sbjct: 2   PSTDYLLTRIIPGGFPRGSMILIAGEPGTGKTTLVSAIAINEIKKGKKVLFVSLNEPKED 61

Query: 110 IY--ARKLGVDLK-------NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
            +      G ++        +L     +  E  L++    + +   D+IVIDS+ ALT 
Sbjct: 62  YFGTIEGFGWEIDESKFKFVDLFTVGREALEAQLKLITEEIFNFKPDLIVIDSITALTS 120


>gi|195970511|gb|ACG60725.1| RecA [Chlamydophila psittaci Cal10]
          Length = 58

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 298 WFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ---NAGLVADSLLQEPAINT 350
           WF+++ ++LGQGRE  +  L++N ++ E +E  + +   ++    +   +EP +  
Sbjct: 1   WFNYQDRKLGQGREAVREELKKNKKLLEELEKRIFEVTASSKTTVEEKKEEPVVQP 56


>gi|147781098|emb|CAN73845.1| hypothetical protein VITISV_001338 [Vitis vinifera]
          Length = 453

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 51/147 (34%), Gaps = 9/147 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCAFV 101
           + +   GLD ALG GG P G + E+ GP   GKT   L         A      G   ++
Sbjct: 84  LPTRLKGLDEALG-GGIPFGVLTELVGPPGIGKTQFCLKLSLLASLPASYGGLDGRVIYI 142

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           DAE    S     L + ++++ IS      + L I  M                 +T + 
Sbjct: 143 DAESKFSSRRY--LLLVIQHIKISLLQNHVKLLVIDSMAALVTGSVAEFSRIPIVVTNQV 200

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTS 188
             +   G S    Q     + +   T 
Sbjct: 201 RSQSHDGTSQYSFQVESRGETVDDHTR 227


>gi|81901537|sp|Q8R2J9|RA51C_CRIGR RecName: Full=DNA repair protein RAD51 homolog 3; Short=R51H3;
           AltName: Full=RAD51 homolog C; AltName: Full=RAD51-like
           protein 2
 gi|19702129|emb|CAC88355.1| RAD51-like protein 2 [Cricetulus griseus]
          Length = 366

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 71/225 (31%), Gaps = 46/225 (20%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           + +    LD  LG GG P  +  E+ G    GKT L +      Q         G   F+
Sbjct: 91  IITFCSALDNILG-GGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFI 149

Query: 102 DAEHALDSIYARKLG-----------------------------VDLKNLLISQPDTGEQ 132
           D E +        L                                L ++   +     +
Sbjct: 150 DTEGSFMVDRVVTLANACIQHLHLIAGTHKDEEHQKALEGFTLENILSHIYYFRCHDYTE 209

Query: 133 ALE---ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
            L    +    + + +   +VI    AL  R +++         ++ RL++   +++ S 
Sbjct: 210 LLAQVYLLPDFLSNHSKVQLVIIDGIALPFRHDLDD------LSLRTRLLNGLAQQMISL 263

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
            +  +  ++  NQM  KI           G +     +++RL   
Sbjct: 264 ANNHRLAVILTNQMTTKIDKNQALLVPALGES-WGHAATIRLIFH 307


>gi|18376633|emb|CAD21699.1| Rad51C protein [Cricetulus griseus]
          Length = 305

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 71/225 (31%), Gaps = 46/225 (20%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           + +    LD  LG GG P  +  E+ G    GKT L +      Q         G   F+
Sbjct: 47  IITFCSALDNILG-GGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFI 105

Query: 102 DAEHALDSIYARKLG-----------------------------VDLKNLLISQPDTGEQ 132
           D E +        L                                L ++   +     +
Sbjct: 106 DTEGSFMVDRVVTLANACIQHLHLIAGTHKDEEHQKALEGFTLENILSHIYYFRCHDYTE 165

Query: 133 ALE---ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
            L    +    + + +   +VI    AL  R +++         ++ RL++   +++ S 
Sbjct: 166 LLAQVYLLPDFLSNHSKVQLVIIDGIALPFRHDLDD------LSLRTRLLNGLAQQMISL 219

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
            +  +  ++  NQM  KI           G +     +++RL   
Sbjct: 220 ANNHRLAVILTNQMTTKIDKNQALLVPALGES-WGHAATIRLIFH 263


>gi|28212199|ref|NP_783143.1| DNA repair protein RadA [Clostridium tetani E88]
 gi|28204643|gb|AAO37080.1| DNA repair protein radA [Clostridium tetani E88]
          Length = 465

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 86/239 (35%), Gaps = 13/239 (5%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +S+G   L+  LG GG  +G +  I G    GK+TL L       +  G   ++  E 
Sbjct: 78  ERISTGINELNRVLG-GGIVRGSLTLISGDPGIGKSTLLLQAANNIAEKYGKILYISGEE 136

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           + + I  R  G  L+ L        E  + I    +       I++DS+  L    EI  
Sbjct: 137 SQEQIRLR--GERLQALCKDVYILAETDINIILANIDKIKPTFIILDSIQTLY-NPEISS 193

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
             G      +          +   ++++  I  FI     K G + G        + +  
Sbjct: 194 APGSVSQVRE-------CSNIIMRLAKTNNIPFFIVAHVTKQGSLAGPKVLEHMVDTVLS 246

Query: 226 YSSVRLDIRRV-GSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           +   R +  R+  +IK++   T      ++ ++ +       E  +      +  G +I
Sbjct: 247 FEGERTEEFRILRTIKNRFGNTSEIGVFEMREDGLNEITNPSEVFLEDIN-FNKEGSII 304


>gi|295689701|ref|YP_003593394.1| DNA repair protein RadA [Caulobacter segnis ATCC 21756]
 gi|295431604|gb|ADG10776.1| DNA repair protein RadA [Caulobacter segnis ATCC 21756]
          Length = 460

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 3/140 (2%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
             + +G    D   G GG   G  + I G    GK+TL L   A +   G +CA++  E 
Sbjct: 69  PRILTGVDEFDRVCG-GGVVPGSAILIGGDPGVGKSTLLLQVCASAAARGVSCAYISGEE 127

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           A++ I  R   + L    +S     E AL      ++    D++VIDS+  +   A   G
Sbjct: 128 AVEQIRGRADRMGLSKSNVSLAA--ETALRDILDGLKRDNFDLVVIDSIQTMWSDAHEAG 185

Query: 166 DMGESLPGMQARLMSQALRK 185
               +     A  + +  +K
Sbjct: 186 PGTVTQVRACATELVRLAKK 205


>gi|125775489|ref|XP_001358960.1| GA17378 [Drosophila pseudoobscura pseudoobscura]
 gi|54638701|gb|EAL28103.1| GA17378 [Drosophila pseudoobscura pseudoobscura]
          Length = 348

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 76/244 (31%), Gaps = 27/244 (11%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCA 99
             VS G   LD   G GG     I EI G    GKT L L      Q        G   A
Sbjct: 86  SRVSFGCSALDRCTG-GGVVTRGITEICGAAGVGKTQLLLQLALCVQLPVKLGGLGRGVA 144

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           ++  E A  +    ++   L+     +       + +      S  +   V + +  L  
Sbjct: 145 YICTEDAFPARRLLEMSKALEARYPQEQLNFLGNIFVEHQY-ESQPLINCVSNRLPRLLQ 203

Query: 160 RAEIEGDMGESLPG---------MQARLMSQALRKLTSSISRSKCILVFINQMRMK---I 207
           +  I   + +S+            +AR M +    L S   +  C +V +NQ+      +
Sbjct: 204 QHSIGLIIIDSVAAIFRLYTDFLERARQMRRLADALISYADKYNCAVVCVNQVASSGSGL 263

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGS---IKDKDSITGNQTRVKVVKNKMASPFK 264
                  E    G         R+ I RV     +KD+         V        +P  
Sbjct: 264 ATGPLQDEVPCLGLQWAHLGRTRMRISRVPKQHRVKDQLLTVRKLEVV----YSPETPNS 319

Query: 265 QVEF 268
             EF
Sbjct: 320 FAEF 323


>gi|302876560|ref|YP_003845193.1| DNA repair protein RadA [Clostridium cellulovorans 743B]
 gi|307687232|ref|ZP_07629678.1| DNA repair protein RadA [Clostridium cellulovorans 743B]
 gi|302579417|gb|ADL53429.1| DNA repair protein RadA [Clostridium cellulovorans 743B]
          Length = 457

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 65/179 (36%), Gaps = 16/179 (8%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM + S        E   +G   L+  LG GG  +G +  I G    GK+T+ L T   
Sbjct: 59  SIMVIKSGEK-----ERFDTGISELNRVLG-GGLVRGSLTLISGAPGIGKSTILLQTANS 112

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
                G   +V  E + + I  R  G  L  +  +     E  +E  ++ + +     ++
Sbjct: 113 IASKYGKVLYVSGEESEEQIKIR--GDRLSTINENLLIVSETDMEAIEIHINNIKPVFVI 170

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           IDS+  +   +        S     +  + +        I +S  I  FI     K G 
Sbjct: 171 IDSIQTVFKPSVTSAPGSVSQVRECSNSIMR--------IGKSSNIPFFIVAHVTKQGE 221


>gi|322514595|ref|ZP_08067628.1| DNA repair protein RadA [Actinobacillus ureae ATCC 25976]
 gi|322119534|gb|EFX91621.1| DNA repair protein RadA [Actinobacillus ureae ATCC 25976]
          Length = 459

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 58/153 (37%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   SSG   LD  LG G  P G  + I G   +GK+TL L  +    K   T  +V
Sbjct: 70  LQEVPRFSSGFNELDRVLGGGAVP-GSAILIGGHPGAGKSTLLLQVMCCLSKMLPT-LYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+   NL +    + E    I           ++VIDS+  +  
Sbjct: 128 TGEESLQQVAMRANRLGLPTDNLKMLSETSVEHICNIA----DQEKPKLMVIDSIQVMHL 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     +     A  +++  +    +I  
Sbjct: 184 SDIQSSPGSVAQVRECASFLTRYAKTRQVAIIM 216


>gi|15242137|ref|NP_200554.1| XRCC3; ATP binding / damaged DNA binding / protein binding /
           single-stranded DNA binding [Arabidopsis thaliana]
 gi|30696870|ref|NP_851202.1| XRCC3; ATP binding / damaged DNA binding / protein binding /
           single-stranded DNA binding [Arabidopsis thaliana]
 gi|55583983|sp|Q9FKM5|XRCC3_ARATH RecName: Full=DNA repair protein XRCC3 homolog; AltName: Full=X-ray
           repair cross-complementing protein 3 homolog;
           Short=AtXRCC3
 gi|9758307|dbj|BAB08781.1| unnamed protein product [Arabidopsis thaliana]
 gi|15425729|dbj|BAB64342.1| AtXRCC3alpha [Arabidopsis thaliana]
 gi|16444953|dbj|BAB70684.1| AtXRCC3beta [Arabidopsis thaliana]
 gi|19571703|emb|CAD27641.1| Rad51B protein [Arabidopsis thaliana]
 gi|19571705|emb|CAD27642.1| Rad51B protein [Arabidopsis thaliana]
 gi|20384750|gb|AAK54457.1| DNA repair protein XRCC3 [Arabidopsis thaliana]
 gi|109946499|gb|ABG48428.1| At5g57450 [Arabidopsis thaliana]
 gi|332009520|gb|AED96903.1| DNA repair protein XRCC3-like protein [Arabidopsis thaliana]
 gi|332009521|gb|AED96904.1| DNA repair protein XRCC3-like protein [Arabidopsis thaliana]
          Length = 304

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 71/213 (33%), Gaps = 33/213 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +++G   LD  L  GG     + EI      GKT L L     +Q         G+  ++
Sbjct: 21  LTTGCEILDGCL-RGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPISHGGLNGSSLYL 79

Query: 102 DAEHALDSIYARKLG----------------VDLKNLLISQPDTGEQALEITDMLV---- 141
            +E         +L                     ++ +    + +   +I   +     
Sbjct: 80  HSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHLFDIMPRIDGFVG 139

Query: 142 ---RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
                  + +IV+DSVAAL  R+E +    +     ++ L  +   KL    S+    +V
Sbjct: 140 NSKTRFPLKLIVLDSVAALF-RSEFDNTPSD--LKKRSSLFFKISGKLKQLASKFDLAIV 196

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
             NQ+   +    G      G     + S  R+
Sbjct: 197 ITNQVTDLVETSDGLSGLRIGNLRYLYSSGRRV 229


>gi|284162485|ref|YP_003401108.1| ATPase [Archaeoglobus profundus DSM 5631]
 gi|284012482|gb|ADB58435.1| ATPase involved in biogenesis of flagella-like protein
           [Archaeoglobus profundus DSM 5631]
          Length = 244

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 93/261 (35%), Gaps = 53/261 (20%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
            +    +   ++SSG+  +D  LG GG P G +  I G   +GK+ L           G 
Sbjct: 6   DELEEKQKKNILSSGNSEIDKRLG-GGIPLGSLTLIEGENDTGKSVLCQQFTYGGLVQGH 64

Query: 97  TCAFVDAEHALDSIY--ARKLGVDLKNLL---------------ISQPDTGEQALEITDM 139
             A+   E+ + S+      L +D+ +                    PD   + L++   
Sbjct: 65  NIAYYTTENTIKSLLAQMESLSLDVSDFYAWGYLRIFPIHLEGVEWNPDQMRKVLQLLSD 124

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
            ++S   ++I+IDS+   T  +  +  +             + L +L +   R K IL+ 
Sbjct: 125 HIKSIRENVIIIDSLTMFTTYSTEDDVL-------------EFLTRLKNLCDRGKTILIT 171

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ----TRVKVV 255
           ++Q   K   +            ++      L +R+           G++      V  +
Sbjct: 172 LHQHAFKEDTL----------VRIRSACDCHLFLRK--------EQVGDRYVCVLEVAKI 213

Query: 256 KNKMASPFKQVEFDIMYGEGI 276
           +    +    V F++  G G+
Sbjct: 214 RGAKKTTGNIVSFEVHPGFGL 234


>gi|242399797|ref|YP_002995222.1| ATPase, RecA superfamily [Thermococcus sibiricus MM 739]
 gi|242266191|gb|ACS90873.1| ATPase, RecA superfamily [Thermococcus sibiricus MM 739]
          Length = 241

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 82/248 (33%), Gaps = 39/248 (15%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM    +         VS+G  GLD  +G GG   GR+  + GP  SGKTTL +  + + 
Sbjct: 5   IM----ENKSLPIYSRVSTGVKGLDNLIG-GGLIPGRVYVVTGPPGSGKTTLGIQFLVEG 59

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ------------------PDTGEQA 133
            K G    ++       +I    L      L   +                    T ++ 
Sbjct: 60  AKNGEKGIYISLVDDSKTIIQDMLYYRFNLLSHIRSKKIVIYDLGAVLSQGGKKPTWKEI 119

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           L+    ++       +VIDS   L    +   +  + + G            L   +S  
Sbjct: 120 LKEIKRIILHENAKRVVIDSFTPLEFMVQDPENKRKEVVG------------LIKLLSTM 167

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD--KDSITGNQTR 251
           +   + I +M       +        G  +  +   + ++ R   I      S   N  +
Sbjct: 168 EITAIVITEMIE--SEKYTDDYYVASGVVIMHHFMRQYNMIRALQILKMRGTSHDSNLKK 225

Query: 252 VKVVKNKM 259
           +K+ +N +
Sbjct: 226 IKITENGI 233


>gi|220924499|ref|YP_002499801.1| DNA repair protein RadA [Methylobacterium nodulans ORS 2060]
 gi|219949106|gb|ACL59498.1| DNA repair protein RadA [Methylobacterium nodulans ORS 2060]
          Length = 477

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 67/217 (30%), Gaps = 16/217 (7%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG I  L       +      SG   LD   G GGF +G ++ + G    GK+TL +   
Sbjct: 55  KGRIFPLEGLSGEVKDAPRTPSGIAELDRVTG-GGFVRGSVILLGGDPGIGKSTLLMQAS 113

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A   +     A++  E A+  +  R   + L    +          +I   L +     +
Sbjct: 114 AALARRSERVAYISGEEAVGQVRMRAERLGLAAAPVELAA-ETNVEDIVATLTQGRPPAL 172

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK-- 206
            +IDS+  +            +     A+        L      S   ++ +  +     
Sbjct: 173 AIIDSIQTMWTETVESAPGTVTQVRGSAQS-------LIRFAKTSGTAVILVGHVTKDGQ 225

Query: 207 -----IGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
                +         +  G+    +  +R    R G 
Sbjct: 226 IAGPRVVEHMVDAVVSFEGDQGHHFRILRAVKNRFGP 262


>gi|323491952|ref|ZP_08097121.1| hypothetical protein VIBR0546_04282 [Vibrio brasiliensis LMG 20546]
 gi|323313810|gb|EGA66905.1| hypothetical protein VIBR0546_04282 [Vibrio brasiliensis LMG 20546]
          Length = 225

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 2/118 (1%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
            L S     E  +  S+G   LD  L  GGFPK  +VE+ G  S G+  L L  +  + +
Sbjct: 13  WLWSGAQTSENQDYYSTGYDLLDQKL-EGGFPKHGVVELQGETSIGELRLLLPHLKNTSQ 71

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
                 F+     L +      G+D   +L+  P+   QAL   +  +RSGA   +++
Sbjct: 72  Q-RLSVFIHPPGYLCAEQLHHFGLDTNKVLMISPNNEHQALWAAEQCLRSGACSNVLL 128


>gi|193213796|ref|YP_001994995.1| circadian clock protein KaiC [Chloroherpeton thalassium ATCC 35110]
 gi|193087273|gb|ACF12548.1| putative circadian clock protein, KaiC [Chloroherpeton thalassium
           ATCC 35110]
          Length = 574

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 72/225 (32%), Gaps = 13/225 (5%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
             + V SG   LD  LG  GF +G  V + G   +GK++LA      +   G  C +++ 
Sbjct: 257 ATDFVPSGLSSLDELLGGRGFYRGSSVLLTGAAGTGKSSLASQFAQAACGRGEKCLYLNM 316

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E ++  I      + ++     +          + M      +  ++   +    P+  I
Sbjct: 317 EESVWQIVRNMRSIGVELEPFIEKGLLLFEPTRSTMCGLEYHLVKLIK-LLETYEPQHLI 375

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
              +   L   ++  +   + +L   +       +  N             +     + +
Sbjct: 376 IDPVSSFLAVGESIEVKSMMSRLIDYLKMRHITTIMTNLSDTNAQNEITQMDI---SSLM 432

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
             + +V++   +            N+    +    M    +  EF
Sbjct: 433 DTWMTVQMVRNQNEQ---------NRLIYIIKSRGMGHSNQMREF 468



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 4/101 (3%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT-IAQSQK 93
           + +   +  G+    +G  GLD  L  GG PKGR   + G    GKT LA+   +   Q+
Sbjct: 8   MSNVEKMKAGLPKCPTGIKGLDEVL-FGGIPKGRSTMVLGNAGCGKTLLAMEFLVQGIQQ 66

Query: 94  TGGTCAFVDAEHALDSIY--ARKLGVDLKNLLISQPDTGEQ 132
            G    FV  E   + +    +  G +L+    S     + 
Sbjct: 67  FGAHGLFVSFEEKKEDLLEDMQSFGWNLEAAEQSGALLIKH 107


>gi|325088236|gb|EGC41546.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
          Length = 456

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 68/230 (29%), Gaps = 56/230 (24%)

Query: 47  VVSSGSLGLDIAL--------------------------GIGGFPKGRIVEIYGPESSGK 80
            VS+G   LD+AL                            GG  +G I E+ GP   GK
Sbjct: 34  AVSTGLPRLDVALALRSGPMPSPLGPRRKNYYGQSHPDASTGGIKRGEITEVIGPRGVGK 93

Query: 81  TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT--- 137
           T  A+   A   +      ++D                L  LL   P T    L +    
Sbjct: 94  TAFAMGIAASVLQAAQKVVWID--------------EFLNQLLYFHPPTIAHLLALISHS 139

Query: 138 DMLVRSGAVDIIVIDSVAALTP------------RAEIEGDMGESLPGMQARLMSQALRK 185
                     +IVIDS+++L              +A+            + +++      
Sbjct: 140 PKGFPPPEAGLIVIDSISSLFTSEYRTRLPPGNRKAKFMATAESKNERTRWKIIGNLAMN 199

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSP-ETTTGGNALKFYSSVRLDIR 234
           L     R  C++V IN+M  +              G       + R+ + 
Sbjct: 200 LKKLAVRLNCVVVVINEMASRFRGKHPPVLHEALSGMTWDSGVATRIMLC 249


>gi|219852266|ref|YP_002466698.1| circadian clock protein KaiC [Methanosphaerula palustris E1-9c]
 gi|219546525|gb|ACL16975.1| putative circadian clock protein, KaiC [Methanosphaerula palustris
           E1-9c]
          Length = 574

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 64/182 (35%), Gaps = 12/182 (6%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
             E VS+G   LD  LG  G+ +G  + + G   +GKT+LA   +  + + G  C +   
Sbjct: 254 STERVSTGIPRLDTMLGGLGYYRGSSILVSGQAGTGKTSLASTFVDAACRRGERCLYFLF 313

Query: 104 EHALDSIYARKLGVDLKNLLISQ------------PDTGEQALEITDMLVRSGAVDIIVI 151
           E +   +      + +      +              + E  L +   L+   +  I+V+
Sbjct: 314 EESESQLLRNMRSIGIDLAPWVEQGLLRFHAVRPTAYSLEMHLSMMLKLMEEVSPLILVV 373

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           D ++ L P  +        +  +            T+    S    + +   +M +  + 
Sbjct: 374 DPISNLFPVGDDLQVRSMLMRLIDHAKTLGITGLFTNLSDSSMTGSLALETTQMHVSSLM 433

Query: 212 GS 213
            +
Sbjct: 434 DT 435



 Score = 43.3 bits (100), Expect = 0.066,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 85/255 (33%), Gaps = 23/255 (9%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH-TIAQSQKTGGTCAFV 101
             +E V SG  GLD   G GG PKGR + + G    GKT  A+   +      G    FV
Sbjct: 13  PELEKVPSGISGLDEITG-GGLPKGRPILVSGGPGCGKTLFAMEFVVRGIVDHGEPGVFV 71

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI--------IVI 151
             E  +D +      +G DL +L+  +    +        +  +G  D+        ++I
Sbjct: 72  AFEEKVDDLMKNFASMGFDLFDLIEQKKIVLDHIFIDRSEIEEAGEYDLEGLFIRLGMLI 131

Query: 152 DSVAAL-----TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D V A      T  A   G   E++   + R +   L+       R    ++   +    
Sbjct: 132 DRVGAKRIAIDTIEAIFSGFSNEAILRSELRRLFLWLKD------RGVTAVITGERGDRT 185

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           I               L    + ++  RR+  +K + S+ G      ++     S     
Sbjct: 186 ITKYGLEEYVADCVITLDHQVNHQIATRRLRVVKYRGSVHGTDEYPFLISEDGISVLPIT 245

Query: 267 EFDIMYGEGISFFGE 281
              + +         
Sbjct: 246 SMSLHHPASTERVST 260


>gi|242240871|ref|YP_002989052.1| DNA repair protein RadA [Dickeya dadantii Ech703]
 gi|242132928|gb|ACS87230.1| DNA repair protein RadA [Dickeya dadantii Ech703]
          Length = 461

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 65/158 (41%), Gaps = 9/158 (5%)

Query: 30  GAIMQLGSQGSI-FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           G+I ++     I  E +   S+G L  D  LG GG   G  + I G   +GK+TL L T+
Sbjct: 59  GSISKVQKLSEISLEELPRFSTGFLEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTL 117

Query: 89  AQSQKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            +         +V  E +L  +  R  +LG+  +++ +    + EQ   I +        
Sbjct: 118 CKLAGQ-MKTLYVTGEESLQQVAMRAHRLGLPAQHINMLSETSIEQICLIAE----QEQP 172

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
            ++VIDS+  +            +     A  +++  +
Sbjct: 173 RLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAK 210


>gi|62289434|ref|YP_221227.1| DNA repair protein RadA [Brucella abortus bv. 1 str. 9-941]
 gi|82699360|ref|YP_413934.1| DNA repair protein RadA [Brucella melitensis biovar Abortus 2308]
 gi|189023684|ref|YP_001934452.1| RadA, DNA repair protein RadA [Brucella abortus S19]
 gi|237814922|ref|ZP_04593920.1| DNA repair protein RadA [Brucella abortus str. 2308 A]
 gi|254688746|ref|ZP_05152000.1| DNA repair protein RadA [Brucella abortus bv. 6 str. 870]
 gi|254696875|ref|ZP_05158703.1| DNA repair protein RadA [Brucella abortus bv. 2 str. 86/8/59]
 gi|254729779|ref|ZP_05188357.1| DNA repair protein RadA [Brucella abortus bv. 4 str. 292]
 gi|256256993|ref|ZP_05462529.1| DNA repair protein RadA [Brucella abortus bv. 9 str. C68]
 gi|260545815|ref|ZP_05821556.1| RadA protein [Brucella abortus NCTC 8038]
 gi|260754225|ref|ZP_05866573.1| DNA repair protein RadA [Brucella abortus bv. 6 str. 870]
 gi|260757445|ref|ZP_05869793.1| DNA repair protein RadA [Brucella abortus bv. 4 str. 292]
 gi|260761270|ref|ZP_05873613.1| DNA repair protein RadA [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883251|ref|ZP_05894865.1| DNA repair protein RadA [Brucella abortus bv. 9 str. C68]
 gi|297247846|ref|ZP_06931564.1| DNA repair protein RadA [Brucella abortus bv. 5 str. B3196]
 gi|62195566|gb|AAX73866.1| RadA, DNA repair protein RadA [Brucella abortus bv. 1 str. 9-941]
 gi|82615461|emb|CAJ10430.1| RecA bacterial DNA recombination protein:ATP/GTP-binding site motif
           A (P-loop):Peptidase family S16:AAA ATPase:DNA repair
           pro [Brucella melitensis biovar Abortus 2308]
 gi|189019256|gb|ACD71978.1| RadA, DNA repair protein RadA [Brucella abortus S19]
 gi|237789759|gb|EEP63969.1| DNA repair protein RadA [Brucella abortus str. 2308 A]
 gi|260097222|gb|EEW81097.1| RadA protein [Brucella abortus NCTC 8038]
 gi|260667763|gb|EEX54703.1| DNA repair protein RadA [Brucella abortus bv. 4 str. 292]
 gi|260671702|gb|EEX58523.1| DNA repair protein RadA [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674333|gb|EEX61154.1| DNA repair protein RadA [Brucella abortus bv. 6 str. 870]
 gi|260872779|gb|EEX79848.1| DNA repair protein RadA [Brucella abortus bv. 9 str. C68]
 gi|297175015|gb|EFH34362.1| DNA repair protein RadA [Brucella abortus bv. 5 str. B3196]
          Length = 467

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 75/214 (35%), Gaps = 6/214 (2%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG  + L S     E    + SG   LD   G GGF +G  + I G    GK+TL     
Sbjct: 54  KGRAVALTSLSGEIEDAPRIVSGISELDRVTG-GGFVRGSALLIGGDPGIGKSTLLTQAA 112

Query: 89  AQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALE-ITDMLVRSGA 145
           A     G    +V  E A+  I   A++LGV    + ++     E  +  I+     S  
Sbjct: 113 AALSNRGHRIVYVSGEEAVAQIRLRAQRLGVAASAVELAAETNVEDIIATISSDNSGSKR 172

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
            D+++IDS+  L            +     A+ M +   K T +       +    Q+  
Sbjct: 173 PDLVIIDSIQTLWTDMADSAPGTVTQVRSSAQAMIRYA-KQTGAAVVLVGHVTKDGQIAG 231

Query: 206 -KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
            ++            G     Y  +R    R G 
Sbjct: 232 PRVVEHMVDGVLYFEGEGGHHYRILRTVKNRFGP 265


>gi|220918233|ref|YP_002493537.1| circadian clock protein, KaiC [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956087|gb|ACL66471.1| putative circadian clock protein, KaiC [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 498

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G  GLD  LG GGFP+ RI  + G   +GKTTL+L  + +  + G +C ++    + + 
Sbjct: 14  TGIPGLDDVLG-GGFPRRRIHLLQGSPGAGKTTLSLQFLMEGVRQGESCLYIAMSESREE 72

Query: 110 IYARKL--GVDLKNLLISQPDTGEQALE 135
           + +     G DL  + +      + + E
Sbjct: 73  VASVAASHGWDLGGVAVFDASELDGSEE 100



 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   LD  LG GG  +G    + GP  +GK+TLA   +  + + G T A    +    +
Sbjct: 253 TGLEPLDRMLG-GGLDRGTSTLVVGPAGAGKSTLATQIVEAAARRGETVAVFAFDEPRAT 311

Query: 110 IYARKLGVDLKNLLISQPDTGE 131
           + AR     L      +  T +
Sbjct: 312 LLARARATGLDLAPYEEAGTVQ 333


>gi|296445653|ref|ZP_06887608.1| DNA repair protein RadA [Methylosinus trichosporium OB3b]
 gi|296256898|gb|EFH03970.1| DNA repair protein RadA [Methylosinus trichosporium OB3b]
          Length = 481

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 70/212 (33%), Gaps = 4/212 (1%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           G+G    L +     +    +++G    D   G G  P G +  + G    GK+TL +  
Sbjct: 51  GRGKAFALETLAGDAQPAPRIATGIEEFDRVTGGGFVP-GSVALLGGEPGIGKSTLLIQA 109

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
            A     G    ++  E A   +  R   + L    +       Q  +I           
Sbjct: 110 CAALANRGERVIYISGEEAAAQVRLRAERLGLAKSPVELAG-ATQVEDILATCAAGRRPA 168

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM-K 206
           +IVIDS+  +   A        +     A+ + +   KL  S       +    Q+   +
Sbjct: 169 LIVIDSIQTMHTDAVESAPGTVTQVRASAQALLRHA-KLGGSTVILVGHVTKDGQVAGPR 227

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           +         +  G++   +  +R    R G+
Sbjct: 228 VVEHMVDAVLSFEGDSAHHFRMLRASKNRFGA 259


>gi|322815381|gb|EFZ24045.1| DNA recombination and repair protein RAD51, putative [Trypanosoma
           cruzi]
          Length = 492

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT----TLALHTIAQSQKTG 95
              +  E V++   G+D  LG GG P G + E+ GP   GKT     LA++ +   +  G
Sbjct: 115 EADKESERVTTFCRGIDTLLG-GGLPVGTVSEVCGPPGVGKTQMLMQLAVNCLLPRELGG 173

Query: 96  --GTCAFVDAEHALDSIYARKL 115
             G+C F+D E +      R++
Sbjct: 174 LHGSCLFIDTEGSFVPERFREI 195


>gi|302348958|ref|YP_003816596.1| predicted ATPase [Acidilobus saccharovorans 345-15]
 gi|302329370|gb|ADL19565.1| predicted ATPase [Acidilobus saccharovorans 345-15]
          Length = 263

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 3/80 (3%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE +S+G LG+D  L  GG P+G  V + G   +GKT  ALH   Q  K      +V  
Sbjct: 4   HIERLSTGVLGIDRMLA-GGIPRGFFVAVVGEPGTGKTVFALHYAWQGIKDNDKVIYVTT 62

Query: 104 EHALDSIYARK--LGVDLKN 121
           E + +SI  +     +DL  
Sbjct: 63  EESRESIIKQAKMFNMDLDK 82


>gi|197092363|gb|ACH42254.1| RAD51C protein [Triticum aestivum]
          Length = 270

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 67/215 (31%), Gaps = 33/215 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +++GS  L+  LG GG     + EI G    GKT L +      Q        GG   ++
Sbjct: 11  ITTGSGDLNGILG-GGIHCKEVTEIGGVPGIGKTQLGIQLAINVQIPVDYGGLGGKAIYI 69

Query: 102 DAEHALDSIYARKLG-------VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           D E +       ++        ++       +  +G++ L+    L       I      
Sbjct: 70  DTEGSFMVERVYQIAEGCISDIMEYFPCHHDKSSSGQENLQPESFLAGIYYFRICSYTEQ 129

Query: 155 AA--------LTPRAEIEGDMGES----------LPGMQARLMSQALRKLTSSISRSKCI 196
            A        L    ++   + +S             ++ R++S    KL          
Sbjct: 130 IAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFDDLALRTRVLSGLSLKLMKLSKSYNLA 189

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
           +V +NQ+  K            G +        RL
Sbjct: 190 VVLLNQVTTKFTEGSFQLTLALGDS-WSHSCINRL 223


>gi|118467526|ref|YP_890301.1| DNA repair protein RadA [Mycobacterium smegmatis str. MC2 155]
 gi|118168813|gb|ABK69709.1| DNA repair protein RadA [Mycobacterium smegmatis str. MC2 155]
          Length = 466

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 48/140 (34%), Gaps = 3/140 (2%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +G   LD  LG GG   G +  + G    GK+TL L    +   +G    ++  E +  
Sbjct: 76  PTGVSELDRVLG-GGLVAGSVTLLAGDPGVGKSTLLLEVANRWAHSGKRALYLSGEESAG 134

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            I  R       +  +      +  L+I    +      ++V+DSV  ++         G
Sbjct: 135 QIRLRAERTGCTHDQVYLAAESD--LQIALGHIDEVKPSLVVVDSVQTMSTTEADGVTGG 192

Query: 169 ESLPGMQARLMSQALRKLTS 188
            +        ++   +    
Sbjct: 193 VTQVRAVTTSLTAYAKAAVG 212


>gi|1314848|gb|AAB00569.1| RecA [Bacillus subtilis subsp. subtilis str. 168]
          Length = 31

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 23/31 (74%)

Query: 9  IVDKSKALEAALSQIQRVYGKGAIMQLGSQG 39
          + D+  AL+ AL QI++ +GKG+IM+LG + 
Sbjct: 1  MSDRQAALDMALKQIEKQFGKGSIMKLGEKT 31


>gi|269986184|gb|EEZ92496.1| putative circadian clock protein, KaiC [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 237

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 77/207 (37%), Gaps = 8/207 (3%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           + +    IE  ++G  GLD AL  GGFPK  +V + G   +GKTT +   + +  K G  
Sbjct: 3   EKTNQTEIERETTGIPGLDEALN-GGFPKSSVVFLTGTPGAGKTTFSFQFLLEGAKKGEK 61

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
             +   E        ++  +    +         + + I   LV   ++   +   + A+
Sbjct: 62  GLYFTLEE-SQDDLMQQFMMVDSKIKDYIEKGLIKIVTIP--LVDYDSMKEFISSELDAM 118

Query: 158 TPRAEIEGDMGESLP-GMQARLMSQALRKLTSSISRSKCILVFINQMRM---KIGVMFGS 213
             +  +   +            + +A+ +L++ I    C  +FI +M     K+      
Sbjct: 119 AAKRLVVDSITYLQMFFSDIMSIRKAVIELSNIIKARDCTAIFIGEMPYGENKLSSFGVE 178

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIK 240
              + G  AL         IR +  IK
Sbjct: 179 EFASDGVVALYMVERQSSFIRALRIIK 205


>gi|26345474|dbj|BAC36388.1| unnamed protein product [Mus musculus]
          Length = 384

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 68/225 (30%), Gaps = 46/225 (20%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           + +    LD  LG GG P  +  E+ G    GKT L +      Q         G   F+
Sbjct: 109 IITFCSALDNILG-GGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFI 167

Query: 102 DAEHALDSIYARKLG-----------------------------VDLKNLLISQPDTGEQ 132
           D E +        L                                L ++   +     +
Sbjct: 168 DTEGSFMVDRVVSLATACIQHLHLIAGTHTEEEHQKALKDFTLENILSHIYYFRCHDYTE 227

Query: 133 ALE---ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
            L    +    +       +VI    A   R ++E         ++ RL++   +++ S 
Sbjct: 228 LLAQVYLLPDFLSDHPKVKLVIIDGIAFPFRHDLED------LSLRTRLLNGLAQQMISL 281

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
            +  +  ++  NQM  KI           G +     +++RL   
Sbjct: 282 ANNHRLAVILTNQMTTKIDKNQALLVPALGES-WGHAATIRLIFH 325


>gi|240949016|ref|ZP_04753370.1| DNA repair protein RadA [Actinobacillus minor NM305]
 gi|240296603|gb|EER47221.1| DNA repair protein RadA [Actinobacillus minor NM305]
          Length = 459

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   SSG   LD  LG GG   G  + I G   +GK+TL L  +    K   T  +V
Sbjct: 70  LQEVPRFSSGFYELDRVLG-GGVVPGSAILIGGHPGAGKSTLLLQVMCGLSKEIPT-LYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+  ++L +    + E    I           I+VIDS+  +  
Sbjct: 128 TGEESLQQVAMRANRLGLPTEHLKMLSETSVEHICNIA----DQEKPKIMVIDSIQVMHL 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     S     A  +++  +    +I  
Sbjct: 184 ADIQSSPGSVSQVRECASFLTRYAKTRQVAIIM 216


>gi|116327595|ref|YP_797315.1| DNA repair protein RadA [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331794|ref|YP_801512.1| DNA repair protein RadA [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116120339|gb|ABJ78382.1| ATP-dependent serine protease [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116125483|gb|ABJ76754.1| ATP-dependent serine protease [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 459

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 87/255 (34%), Gaps = 27/255 (10%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +E + +G   LD+ LG GG   G +  I G    GK+TL L       +      ++ 
Sbjct: 68  ESLERMGTGLKELDLVLG-GGLVPGSLTLIGGEPGVGKSTLVLEVSRYLTQANKKVLYIS 126

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E +      R     +     +   T E   E    ++       + +DS+  +   A 
Sbjct: 127 GEES--PSQIRMRAERMGFRSSNLLLTSETYAENISAMIEGARPTAVFVDSIQTIAREA- 183

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           +    G          + +  + L  +  RS   ++    +            T  G   
Sbjct: 184 LPNQAGTVT------QLRECTQILLETAKRSGIPILMTGHIT--------KEGTIAGPKI 229

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           L+      L         + D +   +  ++ VKN+  +      F++ +  G+   G+ 
Sbjct: 230 LEHLVDTVLYF-------EGDRLNYYRL-LRAVKNRFGAVGDLAIFEM-FSGGLREVGDR 280

Query: 283 IDLGVKASIVDKSGA 297
             + V A   ++SG+
Sbjct: 281 NSIFVSAGAEERSGS 295


>gi|330838233|ref|YP_004412813.1| DNA repair protein RadA [Selenomonas sputigena ATCC 35185]
 gi|329745997|gb|AEB99353.1| DNA repair protein RadA [Selenomonas sputigena ATCC 35185]
          Length = 457

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 7/120 (5%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
             E +    +GS  LD  LG GG   G +V I G    GK++L L   A+  + G    +
Sbjct: 65  AVEDMPRFLTGSGELDRVLG-GGVIPGSMVLIVGDPGVGKSSLTLRVAAEIARGGKRVLY 123

Query: 101 VDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           V  E +   +  R  +LG    +L +         LE   + + +   +++VIDS+  + 
Sbjct: 124 VTGEESTRQVRMRADRLGAIADDLFVVSETN----LERITVHIETVKPELLVIDSIQTIF 179


>gi|260888454|ref|ZP_05899717.1| DNA repair protein RadA [Selenomonas sputigena ATCC 35185]
 gi|260861990|gb|EEX76490.1| DNA repair protein RadA [Selenomonas sputigena ATCC 35185]
          Length = 484

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 7/120 (5%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
             E +    +GS  LD  LG GG   G +V I G    GK++L L   A+  + G    +
Sbjct: 92  AVEDMPRFLTGSGELDRVLG-GGVIPGSMVLIVGDPGVGKSSLTLRVAAEIARGGKRVLY 150

Query: 101 VDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           V  E +   +  R  +LG    +L +         LE   + + +   +++VIDS+  + 
Sbjct: 151 VTGEESTRQVRMRADRLGAIADDLFVVSETN----LERITVHIETVKPELLVIDSIQTIF 206


>gi|257464501|ref|ZP_05628872.1| DNA repair protein RadA [Actinobacillus minor 202]
 gi|257450161|gb|EEV24204.1| DNA repair protein RadA [Actinobacillus minor 202]
          Length = 459

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   SSG   LD  LG GG   G  + I G   +GK+TL L  +    K   T  +V
Sbjct: 70  LQEVPRFSSGFYELDRVLG-GGVVPGSAILIGGHPGAGKSTLLLQVMCGLSKEIPT-LYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+  ++L +    + E    I           I+VIDS+  +  
Sbjct: 128 TGEESLQQVAMRANRLGLPTEHLKMLSETSVEHICNIA----DQEKPKIMVIDSIQVMHL 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     S     A  +++  +    +I  
Sbjct: 184 ADIQSSPGSVSQVRECASFLTRYAKTRQVAIIM 216


>gi|187465986|emb|CAQ51530.1| Rad51 homolog c (S. cerevisiae) [Mus musculus]
 gi|187465991|emb|CAQ52015.1| Rad51 homolog c (S. cerevisiae) [Mus musculus]
 gi|187954697|gb|AAI41035.1| RAD51 homolog c (S. cerevisiae) [Mus musculus]
          Length = 366

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 68/225 (30%), Gaps = 46/225 (20%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           + +    LD  LG GG P  +  E+ G    GKT L +      Q         G   F+
Sbjct: 91  IITFCSALDNILG-GGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFI 149

Query: 102 DAEHALDSIYARKLG-----------------------------VDLKNLLISQPDTGEQ 132
           D E +        L                                L ++   +     +
Sbjct: 150 DTEGSFMVDRVVSLATACIQHLHLIAGTHTEEEHQKALKDFTLENILSHIYYFRCHDYTE 209

Query: 133 ALE---ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
            L    +    +       +VI    A   R ++E         ++ RL++   +++ S 
Sbjct: 210 LLAQVYLLPDFLSDHPKVQLVIIDGIAFPFRHDLED------LSLRTRLLNGLAQQMISL 263

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
            +  +  ++  NQM  KI           G +     +++RL   
Sbjct: 264 ANNHRLAVILTNQMTTKIDKNQALLVPALGES-WGHAATIRLIFH 307


>gi|148683866|gb|EDL15813.1| Rad51 homolog c (S. cerevisiae), isoform CRA_a [Mus musculus]
          Length = 386

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 68/225 (30%), Gaps = 46/225 (20%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           + +    LD  LG GG P  +  E+ G    GKT L +      Q         G   F+
Sbjct: 111 IITFCSALDNILG-GGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFI 169

Query: 102 DAEHALDSIYARKLG-----------------------------VDLKNLLISQPDTGEQ 132
           D E +        L                                L ++   +     +
Sbjct: 170 DTEGSFMVDRVVSLATACIQHLHLIAGTHTEEEHQKALKDFTLENILSHIYYFRCHDYTE 229

Query: 133 ALE---ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
            L    +    +       +VI    A   R ++E         ++ RL++   +++ S 
Sbjct: 230 LLAQVYLLPDFLSDHPKVQLVIIDGIAFPFRHDLED------LSLRTRLLNGLAQQMISL 283

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
            +  +  ++  NQM  KI           G +     +++RL   
Sbjct: 284 ANNHRLAVILTNQMTTKIDKNQALLVPALGES-WGHAATIRLIFH 327


>gi|56205737|emb|CAI24487.1| Rad51 homolog c (S. cerevisiae) [Mus musculus]
 gi|56800430|emb|CAI35964.1| Rad51 homolog c (S. cerevisiae) [Mus musculus]
 gi|187465987|emb|CAQ51531.1| Rad51 homolog c (S. cerevisiae) [Mus musculus]
 gi|187465992|emb|CAQ52016.1| Rad51 homolog c (S. cerevisiae) [Mus musculus]
          Length = 384

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 68/225 (30%), Gaps = 46/225 (20%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           + +    LD  LG GG P  +  E+ G    GKT L +      Q         G   F+
Sbjct: 109 IITFCSALDNILG-GGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFI 167

Query: 102 DAEHALDSIYARKLG-----------------------------VDLKNLLISQPDTGEQ 132
           D E +        L                                L ++   +     +
Sbjct: 168 DTEGSFMVDRVVSLATACIQHLHLIAGTHTEEEHQKALKDFTLENILSHIYYFRCHDYTE 227

Query: 133 ALE---ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
            L    +    +       +VI    A   R ++E         ++ RL++   +++ S 
Sbjct: 228 LLAQVYLLPDFLSDHPKVQLVIIDGIAFPFRHDLED------LSLRTRLLNGLAQQMISL 281

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
            +  +  ++  NQM  KI           G +     +++RL   
Sbjct: 282 ANNHRLAVILTNQMTTKIDKNQALLVPALGES-WGHAATIRLIFH 325


>gi|16716605|ref|NP_444499.1| DNA repair protein RAD51 homolog 3 [Mus musculus]
 gi|81902682|sp|Q924H5|RA51C_MOUSE RecName: Full=DNA repair protein RAD51 homolog 3; Short=R51H3;
           AltName: Full=RAD51 homolog C; AltName: Full=RAD51-like
           protein 2
 gi|14276845|gb|AAK58420.1|AF324883_1 RAD51L2/RAD51C protein [Mus musculus]
 gi|56205736|emb|CAI24486.1| Rad51 homolog c (S. cerevisiae) [Mus musculus]
 gi|56800429|emb|CAI35963.1| Rad51 homolog c (S. cerevisiae) [Mus musculus]
 gi|60422796|gb|AAH90648.1| RAD51 homolog c (S. cerevisiae) [Mus musculus]
 gi|148683867|gb|EDL15814.1| Rad51 homolog c (S. cerevisiae), isoform CRA_b [Mus musculus]
          Length = 366

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 68/225 (30%), Gaps = 46/225 (20%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           + +    LD  LG GG P  +  E+ G    GKT L +      Q         G   F+
Sbjct: 91  IITFCSALDNILG-GGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFI 149

Query: 102 DAEHALDSIYARKLG-----------------------------VDLKNLLISQPDTGEQ 132
           D E +        L                                L ++   +     +
Sbjct: 150 DTEGSFMVDRVVSLATACIQHLHLIAGTHTEEEHQKALKDFTLENILSHIYYFRCHDYTE 209

Query: 133 ALE---ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
            L    +    +       +VI    A   R ++E         ++ RL++   +++ S 
Sbjct: 210 LLAQVYLLPDFLSDHPKVQLVIIDGIAFPFRHDLED------LSLRTRLLNGLAQQMISL 263

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
            +  +  ++  NQM  KI           G +     +++RL   
Sbjct: 264 ANNHRLAVILTNQMTTKIDKNQALLVPALGES-WGHAATIRLIFH 307


>gi|307252508|ref|ZP_07534404.1| DNA repair protein radA [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306860100|gb|EFM92117.1| DNA repair protein radA [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
          Length = 495

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 56/153 (36%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   SSG   LD  LG GG   G  + I G   +GK+TL L  +           +V
Sbjct: 106 LQEVPRFSSGFNELDRVLG-GGVVPGSAILIGGHPGAGKSTLLLQVMCGL-SKDLPTLYV 163

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+   NL +    + E    I           I+VIDS+  +  
Sbjct: 164 TGEESLQQVAMRANRLGLPTDNLKMLSETSVEHICNIA----DQEKPKIMVIDSIQVMHL 219

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     S     A  +++  +    +I  
Sbjct: 220 ADIQSSPGSVSQVRECASFLTRYAKTRQVAIIM 252


>gi|190150209|ref|YP_001968734.1| DNA repair protein RadA [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307263548|ref|ZP_07545163.1| DNA repair protein radA [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
 gi|189915340|gb|ACE61592.1| DNA repair protein RadA-like protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306871191|gb|EFN02920.1| DNA repair protein radA [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
          Length = 495

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 56/153 (36%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   SSG   LD  LG GG   G  + I G   +GK+TL L  +           +V
Sbjct: 106 LQEVPRFSSGFNELDRVLG-GGVVPGSAILIGGHPGAGKSTLLLQVMCGL-SKDLPTLYV 163

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+   NL +    + E    I           I+VIDS+  +  
Sbjct: 164 TGEESLQQVAMRANRLGLPTDNLKMLSETSVEHICNIA----DQEKPKIMVIDSIQVMHL 219

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     S     A  +++  +    +I  
Sbjct: 220 ADIQSSPGSVSQVRECASFLTRYAKTRQVAIIM 252


>gi|32033521|ref|ZP_00133848.1| COG1066: Predicted ATP-dependent serine protease [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208357|ref|YP_001053582.1| DNA repair protein RadA [Actinobacillus pleuropneumoniae L20]
 gi|165976302|ref|YP_001651895.1| DNA repair protein RadA [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|303251259|ref|ZP_07337437.1| DNA repair protein RadA [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|303252879|ref|ZP_07339038.1| DNA repair protein RadA [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|307247869|ref|ZP_07529905.1| DNA repair protein radA [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|307250121|ref|ZP_07532083.1| DNA repair protein radA [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|307256934|ref|ZP_07538712.1| DNA repair protein radA [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|307261366|ref|ZP_07543041.1| DNA repair protein radA [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|126097149|gb|ABN73977.1| DNA repair protein RadA-like protein [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165876403|gb|ABY69451.1| DNA repair protein [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|302648309|gb|EFL78506.1| DNA repair protein RadA [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|302649801|gb|EFL79979.1| DNA repair protein RadA [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306855671|gb|EFM87838.1| DNA repair protein radA [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|306857852|gb|EFM89946.1| DNA repair protein radA [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306864668|gb|EFM96573.1| DNA repair protein radA [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|306869097|gb|EFN00899.1| DNA repair protein radA [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
          Length = 459

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 56/153 (36%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   SSG   LD  LG GG   G  + I G   +GK+TL L  +           +V
Sbjct: 70  LQEVPRFSSGFNELDRVLG-GGVVPGSAILIGGHPGAGKSTLLLQVMCGL-SKDLPTLYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+   NL +    + E    I           I+VIDS+  +  
Sbjct: 128 TGEESLQQVAMRANRLGLPTDNLKMLSETSVEHICNIA----DQEKPKIMVIDSIQVMHL 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     S     A  +++  +    +I  
Sbjct: 184 ADIQSSPGSVSQVRECASFLTRYAKTRQVAIIM 216


>gi|170068519|ref|XP_001868898.1| RAD51C protein [Culex quinquefasciatus]
 gi|167864512|gb|EDS27895.1| RAD51C protein [Culex quinquefasciatus]
          Length = 275

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 7/112 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           + +    LD A+G  G   G I E  GP  SGKT + L     +         GG   ++
Sbjct: 19  IITFCKDLDHAIGHPGVSVGLITEFCGPPGSGKTQMCLQLCVNANLPKELGGLGGKSLYL 78

Query: 102 DAEHALDSIYARKLGVD-LKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           D          R++    +++       +  Q  E+T        ++ ++ +
Sbjct: 79  DTNFGFSPDRLREIATACVQHCQRIVRTSRPQLAEVTSKFTAESVMESVLYN 130


>gi|87199973|ref|YP_497230.1| DNA repair protein RadA [Novosphingobium aromaticivorans DSM 12444]
 gi|87135654|gb|ABD26396.1| DNA repair protein RadA [Novosphingobium aromaticivorans DSM 12444]
          Length = 455

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 69/208 (33%), Gaps = 11/208 (5%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G    D ALG GG   G  + + G    GK+TL L   A+   +GG+  ++  E A D 
Sbjct: 72  TGIAEFDRALG-GGLVPGCAILMGGDPGIGKSTLLLQASAKVALSGGSAVYISGEEASDQ 130

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +  R   + L    I          +I   L       ++VIDS+  +            
Sbjct: 131 VRLRADRLGLGKAPILLAAATS-VRDILTTLGNMEPPSLVVIDSIQTMHSDQIEGAPGTV 189

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           S     A  + +  ++   ++     +    +    ++         +  G     Y  +
Sbjct: 190 SQVRGCAFELIRYAKENGVALVLVGHVTKDGSIAGPRVLEHMVDVVMSFEGERSHQYRIL 249

Query: 230 RLDIRRVGSIKD---------KDSITGN 248
           R    R G++ +              GN
Sbjct: 250 RALKNRFGAVDEIGVFAMAGQGLEEVGN 277


>gi|327259038|ref|XP_003214345.1| PREDICTED: DNA repair protein XRCC3-like [Anolis carolinensis]
          Length = 375

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 74/201 (36%), Gaps = 34/201 (16%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---GGT---CAFV 101
           +S G   LD  L  GG P   I EI G  S+GKT +AL      Q     GG      ++
Sbjct: 102 LSLGCPVLDGFL-QGGIPLTGITEIAGESSAGKTQIALQLALSIQYPYKYGGLESGAVYI 160

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD-------------- 147
             E A  +   ++L     NL    P    Q ++  + +      D              
Sbjct: 161 CTEDAFPNKRLQQLIQQQANLRDDVPPIVVQKIKFGNRIFVEHTADLDAFRNCITNRIGI 220

Query: 148 --------IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
                   +I++DS+AAL  R E     G     ++A+ +     KL    S+ +  +V 
Sbjct: 221 LLSRGMVRLIIVDSIAALF-RCEF----GAKDSVLKAKYLLMFGAKLHELSSQFQIPIVC 275

Query: 200 INQMRMKIGVMFGSPETTTGG 220
           INQ+   +     +  + +  
Sbjct: 276 INQVTDTMDTAGRAVHSPSCT 296


>gi|193216062|ref|YP_001997261.1| circadian clock protein KaiC [Chloroherpeton thalassium ATCC 35110]
 gi|193089539|gb|ACF14814.1| putative circadian clock protein, KaiC [Chloroherpeton thalassium
           ATCC 35110]
          Length = 505

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 13/131 (9%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            ++SG   LD   G GGF +  I+ + GP  +GKT LA   IA        C     E +
Sbjct: 249 RITSGVAELDKMCG-GGFFRDSIILVSGPTGNGKTLLATQFIAGGVSNDERCLLFAFEES 307

Query: 107 LDSIYARKLGVDLK------------NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
            + ++   +G  +                  +  + E  L      +     + + +DS+
Sbjct: 308 REQLFRNAIGWGIDFEQFEKKGKLKVMCEYPEVTSLEDHLIRMKDAIVEFKPNRVAVDSL 367

Query: 155 AALTPRAEIEG 165
           +AL   + I G
Sbjct: 368 SALERVSTIRG 378


>gi|37929078|gb|AAO64350.1| putative DNA repair protein [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
          Length = 318

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 56/151 (37%), Gaps = 8/151 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   SSG   LD  LG GG   G  + I G   +GK+TL L  +           +V
Sbjct: 70  LQEVPRFSSGFNELDRVLG-GGVVPGSAILIGGHPGAGKSTLLLQVMCGL-SKDLPTLYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+   NL +    + E    I           I+VIDS+  +  
Sbjct: 128 TGEESLQQVAMRANRLGLPTDNLKMLSETSVEHICNIA----DQEKPKIMVIDSIQVMHL 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
                     S     A  +++  +    +I
Sbjct: 184 ADIQSSPGSVSQVRECASFLTRYAKTRQVAI 214


>gi|209944566|gb|ACI96514.1| spindle D [Drosophila simulans]
          Length = 212

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 8/117 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           + +G+  LD   G GG   G +VE+ G   +GKT + L      Q         G+  F+
Sbjct: 46  ILTGNKALDTHFG-GGISLGHVVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFI 104

Query: 102 DAEHALDSIYARKLGVDLK-NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           D            L + L+       P+     +      VR   +D ++   ++  
Sbjct: 105 DTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKMLQKIHYVRCPKLDQLMATVLSCH 161


>gi|307254717|ref|ZP_07536544.1| DNA repair protein radA [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306862243|gb|EFM94210.1| DNA repair protein radA [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
          Length = 495

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 56/153 (36%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   SSG   LD  LG GG   G  + I G   +GK+TL L  +           +V
Sbjct: 106 LQEVPRFSSGFNELDRVLG-GGVVPGSAILIGGHPGAGKSTLLLQVMCGL-SKDLPTLYV 163

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+   NL +    + E    I           I+VIDS+  +  
Sbjct: 164 TGEESLQQVAMRANRLGLPTDNLKMLSETSVEHICNIA----DQEKPKIMVIDSIQVMHL 219

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     S     A  +++  +    +I  
Sbjct: 220 ADIQSSPGSVSQVRECASFLTRYAKNRQVAIIM 252


>gi|307245745|ref|ZP_07527831.1| DNA repair protein radA [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|307259158|ref|ZP_07540888.1| DNA repair protein radA [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|306853447|gb|EFM85666.1| DNA repair protein radA [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306866825|gb|EFM98683.1| DNA repair protein radA [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
          Length = 459

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 56/153 (36%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   SSG   LD  LG GG   G  + I G   +GK+TL L  +           +V
Sbjct: 70  LQEVPRFSSGFNELDRVLG-GGVVPGSAILIGGHPGAGKSTLLLQVMCGL-SKDLPTLYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+   NL +    + E    I           I+VIDS+  +  
Sbjct: 128 TGEESLQQVAMRANRLGLPTDNLKMLSETSVEHICNIA----DQEKPKIMVIDSIQVMHL 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     S     A  +++  +    +I  
Sbjct: 184 ADIQSSPGSVSQVRECASFLTRYAKNRQVAIIM 216


>gi|187776548|ref|ZP_02993021.1| hypothetical protein CLOSPO_00060 [Clostridium sporogenes ATCC
           15579]
 gi|187775207|gb|EDU39009.1| hypothetical protein CLOSPO_00060 [Clostridium sporogenes ATCC
           15579]
          Length = 452

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 62/165 (37%), Gaps = 13/165 (7%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + +G   L+  LG GG  KG +  I G    GK+T+ L          G   +V  E 
Sbjct: 66  ERLDTGIKELNRVLG-GGIVKGSLTLISGSPGIGKSTILLQAANNIATKYGKVLYVSGEE 124

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           + + I  R     LK +        E  ++I    + +     ++IDS+  L  ++E+  
Sbjct: 125 SEEQIKMRA--DRLKVISKDIYILSETNVDIIKEHITTINPKFVIIDSIQTLF-KSELSS 181

Query: 166 DMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
             G  S     +  +          IS++  I  FI     K G 
Sbjct: 182 APGTVSQVRQCSNDIMH--------ISKNNNIPFFIVAHVTKQGE 218


>gi|21227192|ref|NP_633114.1| circadian clock protein KaiC [Methanosarcina mazei Go1]
 gi|20905531|gb|AAM30786.1| putative DNA integration/recombination/invertion protein
           [Methanosarcina mazei Go1]
          Length = 474

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 12/165 (7%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +S+G   LD  LG  G+ +G  + I G   SGKT+ A      + +   +C +   E 
Sbjct: 159 ERISTGIPRLDTMLGGQGYYRGTTILISGTAGSGKTSFAAQFCKAACEREESCLYFAYEE 218

Query: 106 ALDSIY--ARKLGVDLKN--------LLISQPDTGEQALEITDM--LVRSGAVDIIVIDS 153
           + D I    R +G+DL+         +  S+P      + +  M   + +   +++VID 
Sbjct: 219 SPDQIIRNMRSIGIDLQPYLDSGLLKIHASRPMAYGLEMHLITMRKFLDTFKPNVVVIDP 278

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           ++ LT               +    +       TS +       +
Sbjct: 279 ISNLTNVGTQTDVRLMLTRFIDYLKLRNITAVCTSLVEHESTAGI 323


>gi|239831320|ref|ZP_04679649.1| DNA repair protein RadA [Ochrobactrum intermedium LMG 3301]
 gi|239823587|gb|EEQ95155.1| DNA repair protein RadA [Ochrobactrum intermedium LMG 3301]
          Length = 464

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 78/217 (35%), Gaps = 16/217 (7%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG  + L S     E    + SG   LD   G GGF +G  + I G    GK+TL     
Sbjct: 54  KGRAVALTSLSGDIEDAPRIISGISELDRVTG-GGFVRGSALLIGGDPGIGKSTLLTQAA 112

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A     G    +V  E A+  I  R   + + +  +          +I   +  +   D+
Sbjct: 113 AALSNRGHRIVYVSGEEAVAQIRLRAQRLGVASSAVELAA-ETNVEDIIATISDTKRPDL 171

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM--RMK 206
           ++IDS+  L        DM +S PG   ++ S + + L     ++   +V +  +    +
Sbjct: 172 VIIDSIQTLWT------DMADSAPGTVTQVRS-SAQALIRYAKQTGAAVVLVGHVTKEGQ 224

Query: 207 IGVMFGSPETTTG-----GNALKFYSSVRLDIRRVGS 238
           I           G     G     Y  +R    R G 
Sbjct: 225 IAGPRVVEHMVDGVLYFEGEGGHHYRILRTVKNRFGP 261


>gi|172041358|ref|YP_001801072.1| DNA repair protein RadA [Corynebacterium urealyticum DSM 7109]
 gi|171852662|emb|CAQ05638.1| DNA repair protein RadA [Corynebacterium urealyticum DSM 7109]
          Length = 466

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 61/186 (32%), Gaps = 18/186 (9%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +GS  LD  LG GG   G  V + G    GK+TL L   A   K   +   + AE ++
Sbjct: 80  IPTGSAELDRVLG-GGIVPGSAVLLAGEPGVGKSTLLLEVSANWAKANRSVLIITAEESV 138

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
             +  R        L        E  LE     V +   ++I++DS+  +          
Sbjct: 139 GQVRHRA--ERTNALSEKLYIAAEHDLEQALHHVDTVKPELIIVDSLQTM-------NAS 189

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G                 LT+   +S   ++ +  +     V         G   ++   
Sbjct: 190 GVEGVPGGVTQTRAVTSTLTTLAKQSGTPVLAVGHVTKDGNV--------AGPRTIEHLV 241

Query: 228 SVRLDI 233
            V L  
Sbjct: 242 DVVLHF 247


>gi|303283722|ref|XP_003061152.1| Rad51 DNA recombinase 4 [Micromonas pusilla CCMP1545]
 gi|226457503|gb|EEH54802.1| Rad51 DNA recombinase 4 [Micromonas pusilla CCMP1545]
          Length = 372

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +G  G+D  LG GG  +G++ E+ G   +GKT L L   A +   G    +VD     
Sbjct: 101 LPTGCDGVDDLLG-GGLRQGQVTELTGEAGTGKTQLCLSAAASAAALGHRVVYVDTGGGF 159

Query: 108 DSIYARKLGV 117
            S   ++   
Sbjct: 160 SSARIKEFHR 169


>gi|170750294|ref|YP_001756554.1| DNA repair protein RadA [Methylobacterium radiotolerans JCM 2831]
 gi|170656816|gb|ACB25871.1| DNA repair protein RadA [Methylobacterium radiotolerans JCM 2831]
          Length = 478

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 67/194 (34%), Gaps = 4/194 (2%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
             + SG   LD   G GGF +G ++ + G    GK+TL +   A    TG   A++  E 
Sbjct: 72  PRIPSGIGELDRVTG-GGFVRGSVILLGGDPGIGKSTLLMQASAAMAGTGERVAYISGEE 130

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           A+  +  R   + L    +          +I + L +     + +IDS+  +     +E 
Sbjct: 131 AVGQVRLRAERLGLSARPVQLAA-ETNVEDIVETLSQGRPPALAIIDSIQTMWTET-VES 188

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM-KIGVMFGSPETTTGGNALK 224
             G       +        K T +       +    Q+   ++         +  G+   
Sbjct: 189 APGTVTQVRSSAQALIRFAKTTGTAVILVGHVTKDGQIAGPRVVEHMVDAVASFEGDQGH 248

Query: 225 FYSSVRLDIRRVGS 238
            +  +R    R G 
Sbjct: 249 HFRILRAVKNRFGP 262


>gi|26451592|dbj|BAC42893.1| putative f4l23 RAD51Calpha DNA repair-recombination factor
           [Arabidopsis thaliana]
          Length = 342

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 68/226 (30%), Gaps = 45/226 (19%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGG 96
           E +  +++    LD  LG GG     + EI G    GKT + +      Q        GG
Sbjct: 79  ESLPRITTSCSDLDNILG-GGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPRECGGLGG 137

Query: 97  TCAFVDAEHALDSIYARKLG----------------------------VDLKNLLISQPD 128
              ++D E +     A ++                               L+N+   +  
Sbjct: 138 KAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIFYFRVC 197

Query: 129 TGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           +  + + +    +  +       +VI        R + +          + R++S+   K
Sbjct: 198 SYTEQIALVNHLEKFISENKDVKVVIVDSITFHFRQDYDD------LAQRTRVLSEMALK 251

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
                 +    +V +NQ+  K            G +      + R+
Sbjct: 252 FMKLAKKFSLAVVLLNQVTTKFSEGSFQLALALGDS-WSHSCTNRV 296


>gi|312114268|ref|YP_004011864.1| circadian clock protein, KaiC [Rhodomicrobium vannielii ATCC 17100]
 gi|311219397|gb|ADP70765.1| putative circadian clock protein, KaiC [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 495

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 68/175 (38%), Gaps = 9/175 (5%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF--VDAE 104
           V+ + S  L+  LG GG  +G    I GP  +GKT LA+  IA + K G   A    D E
Sbjct: 249 VLQTESKELNTLLG-GGIERGSSTLISGPSGTGKTILAISFIAAAIKRGECAAMFIFDEE 307

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQA--LEITDMLVRSGAVDIIVIDSVAALTPRAE 162
             L    A+ LG DL+ ++ S     EQ     ++           I  D+   +     
Sbjct: 308 LGLLFYRAKALGFDLEAMIRSGKLVVEQVDAASLSPGEFSHHVRRWIEQDAARTVV---- 363

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
           I+G  G      + R +   + +L   ++R              +G ++   + T
Sbjct: 364 IDGLNGYQAAMPEERSLLLHMHELLQYLNRQGATTFLTIAQHGLVGDLYSPVDVT 418



 Score = 42.1 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G  GLD   G GGF +GR+  + G   +GKTT+A   + +  + G    ++      + 
Sbjct: 10  TGIPGLDAVTG-GGFQRGRLFLLEGNPGTGKTTIACQFLLEGLQAGEKGLYITLSETEEE 68

Query: 110 IYARKLGVDLK 120
           + A        
Sbjct: 69  LRATSASHGWD 79


>gi|212532279|ref|XP_002146296.1| DNA repair protein (Rad57), putative [Penicillium marneffei ATCC
           18224]
 gi|210071660|gb|EEA25749.1| DNA repair protein (Rad57), putative [Penicillium marneffei ATCC
           18224]
          Length = 571

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 67/191 (35%), Gaps = 24/191 (12%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-----KTGGTCAF 100
             +S+    LD  LG GG P G + EI G   SGKT   L+ +  +Q       G    +
Sbjct: 110 STISTLDPALDDLLG-GGIPTGYLTEITGESGSGKTQFLLNLLLVAQLPSPHGLGRKAIY 168

Query: 101 VDAEHALD-----------------SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           +  E +L                      R    ++ ++     +T +  L     +  S
Sbjct: 169 ISTEASLSTPRLSQILLSHPYLSKLPAAERPSLANVLSITAIDLETQDHILNYQLPVAIS 228

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
                +V+    A   RAE   +        ++  +++    L +  +R    +V  NQ+
Sbjct: 229 RYNVGLVVIDSIAANYRAEHASN-SMQSLSARSGELAKLGHMLRNLAAREDIAIVVANQV 287

Query: 204 RMKIGVMFGSP 214
             +   M  +P
Sbjct: 288 SDRFDGMVDTP 298


>gi|62859281|ref|NP_001016141.1| X-ray repair complementing defective repair in Chinese hamster
           cells 3 [Xenopus (Silurana) tropicalis]
 gi|110645694|gb|AAI18906.1| xrcc3 protein [Xenopus (Silurana) tropicalis]
          Length = 348

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 54/298 (18%), Positives = 94/298 (31%), Gaps = 37/298 (12%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            +A+ A L    +  G  A+     +       + +S G   LD  L  GG P   I EI
Sbjct: 50  QRAVSAVLR---KNLGVTALQIYSEKAKFPAQHQKLSLGCKVLDNFL-RGGVPLVGITEI 105

Query: 73  YGPESSGKTTLALHTIAQSQKT---GGT---CAFVDAEHALDSIYARKLGVDLKNLLISQ 126
            G  S+GKT + L      Q     GG      ++  E A  S   ++L      L    
Sbjct: 106 AGESSAGKTQIGLQLCLSVQYPVEYGGLASGAVYICTEDAFPSKRLQQLIKSQHKLRSDV 165

Query: 127 PDTGEQALEITDMLVRSGAVDI-----IVIDSVAALTPRAEIEGDMGESLPGMQAR---- 177
           P    + +   D +      D+      +   V  L  R  I   + +S+  +       
Sbjct: 166 PTEVIKNIRFGDSIFVEHTADVDTLTECITKKVPVLLLRGSIRLVIIDSIAALFRCEFAA 225

Query: 178 --------LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE---------TTTGG 220
                    +     KL S  +R    ++ INQ+  ++  M                  G
Sbjct: 226 KDAAIKAKHLQTLGAKLHSMSNRFLTPVLCINQVTDRVREMNSEQIDLGLQDKKVVPALG 285

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK-QVEFDIMYGEGIS 277
            +      +R+ + R   +   +   G    ++VV              D+   +G+ 
Sbjct: 286 ISWSNQLLMRVMVARTQHMAPAEHAGGILRTMEVVFAPHIPQSSCYYTVDLEGVKGLD 343


>gi|16330514|ref|NP_441242.1| circadian clock protein KaiC [Synechocystis sp. PCC 6803]
 gi|54036097|sp|P73860|KACL1_SYNY3 RecName: Full=KaiC-like protein 1
 gi|1653005|dbj|BAA17922.1| sll1595 [Synechocystis sp. PCC 6803]
          Length = 568

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 63/225 (28%), Gaps = 15/225 (6%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +S+G   LD   G  G+ +G  + + G   +GKTTLA      +   G  C ++  E 
Sbjct: 251 ERISTGIPQLDDMFGGQGYYRGSSILVTGRAGTGKTTLAAFFAQATCLRGERCLYLATEE 310

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
                  R L     +L         Q                 +   V    P   +  
Sbjct: 311 -SPQQICRNLNSIGLDLSPYLDSQLLQFDATRPTNYNLEMRLFKIHSWVRNFKPSLVVVD 369

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG--NAL 223
            M   +             +L   +   K  +   +     +G      E       +  
Sbjct: 370 PMSNLITSGNLNQTKNFFMRLIDYLKSQKITVFLTDLTGGNVGYDNEQTEVGVSSLMDTW 429

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
               ++R++  R            N+    +    MA   +  EF
Sbjct: 430 LELQTLRINGER------------NRILYILKSRGMAHSNQVREF 462



 Score = 42.1 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 5/117 (4%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           +         I+   +G  G D  +  GG P+GR   I G    GKT   +  + +    
Sbjct: 1   MTDNSQSLSLIKC-PTGIQGFDE-ITNGGLPQGRPTLICGSAGCGKTLFGVEFLVRGAVE 58

Query: 95  -GGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
            G     V  E +   I      LG +L++L+  +    +        +  +G  D+
Sbjct: 59  YGEPGVLVSFEESAKEIIQNVASLGWNLQDLVAEEKILIDHIYVEASEIQETGEYDL 115


>gi|209944608|gb|ACI96535.1| spindle D [Drosophila melanogaster]
          Length = 212

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 8/117 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           + +G+  LD   G GG   G +VE+ G   +GKT + L      Q         G+  F+
Sbjct: 46  ILTGNKALDTHFG-GGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFI 104

Query: 102 DAEHALDSIYARKLGVDLK-NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           D            L + L+       P+     +      VR   +D ++   ++  
Sbjct: 105 DTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKMLQKIHYVRCPKMDQLMATVLSCH 161


>gi|90416884|ref|ZP_01224813.1| DNA repair protein RadA [marine gamma proteobacterium HTCC2207]
 gi|90331231|gb|EAS46475.1| DNA repair protein RadA [marine gamma proteobacterium HTCC2207]
          Length = 457

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 78/210 (37%), Gaps = 22/210 (10%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
             + +  +S+G+  LD+ LG GG   G  V + G   +GK+T+ L T+ +      +  +
Sbjct: 68  ALDEVPRISTGTGELDLVLG-GGLVPGSCVLLGGEPGAGKSTVLLQTLCKLA-ENHSALY 125

Query: 101 VDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           V  E +   I  R  +LG+    L +    + E    I +         I+V+DS+  + 
Sbjct: 126 VTGEESPQQIAMRANRLGLPTNKLEVMAETSVETVCAIAE----QKRPKILVVDSIQVMH 181

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM-------KIGVMF 211
                      S     A +       L     +S  +L+ +  +         K+    
Sbjct: 182 MEEVASAPGSVSQVRESAAM-------LVRFAKQSGTVLILVGHVTKDGSLAGPKVLEHM 234

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
                   G++   + ++R    R G++ +
Sbjct: 235 IDCSLMLEGSSDNHFRTLRSHKNRFGAVNE 264


>gi|19310403|gb|AAL84941.1| At2g45280/F4L23.21 [Arabidopsis thaliana]
          Length = 363

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 68/226 (30%), Gaps = 45/226 (19%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGG 96
           E +  +++    LD  LG GG     + EI G    GKT + +      Q        GG
Sbjct: 100 ESLPRITTSCSDLDNILG-GGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPRECGGLGG 158

Query: 97  TCAFVDAEHALDSIYARKLG----------------------------VDLKNLLISQPD 128
              ++D E +     A ++                               L+N+   +  
Sbjct: 159 KAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIFYFRVC 218

Query: 129 TGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           +  + + +    +  +       +VI        R + +          + R++S+   K
Sbjct: 219 SYTEQIALVSHLEKFISENKDVKVVIVDSITFHFRQDYDD------LAQRTRVLSEMALK 272

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
                 +    +V +NQ+  K            G +      + R+
Sbjct: 273 FMKLAKKFSLAVVLLNQVTTKFSEGSFQLALALGDS-WSHSCTNRV 317


>gi|18406752|ref|NP_566040.1| ATRAD51C; ATP binding / damaged DNA binding / protein binding /
           recombinase/ single-stranded DNA binding [Arabidopsis
           thaliana]
 gi|55583940|sp|Q8GXF0|RA51C_ARATH RecName: Full=DNA repair protein RAD51 homolog 3; AltName: Full=DNA
           repair-recombination protein RAD51C; Short=AtRAD51C
 gi|11064475|emb|CAC14294.1| Rad51C protein [Arabidopsis thaliana]
 gi|15425731|dbj|BAB64343.1| AtRAD51Calpha [Arabidopsis thaliana]
 gi|20196911|gb|AAB82635.2| putative RAD51C-like DNA repair protein [Arabidopsis thaliana]
 gi|330255439|gb|AEC10533.1| DNA repair protein RAD51-like 3 [Arabidopsis thaliana]
          Length = 363

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 68/226 (30%), Gaps = 45/226 (19%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGG 96
           E +  +++    LD  LG GG     + EI G    GKT + +      Q        GG
Sbjct: 100 ESLPRITTSCSDLDNILG-GGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPRECGGLGG 158

Query: 97  TCAFVDAEHALDSIYARKLG----------------------------VDLKNLLISQPD 128
              ++D E +     A ++                               L+N+   +  
Sbjct: 159 KAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIFYFRVC 218

Query: 129 TGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           +  + + +    +  +       +VI        R + +          + R++S+   K
Sbjct: 219 SYTEQIALVNHLEKFISENKDVKVVIVDSITFHFRQDYDD------LAQRTRVLSEMALK 272

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
                 +    +V +NQ+  K            G +      + R+
Sbjct: 273 FMKLAKKFSLAVVLLNQVTTKFSEGSFQLALALGDS-WSHSCTNRV 317


>gi|153007907|ref|YP_001369122.1| DNA repair protein RadA [Ochrobactrum anthropi ATCC 49188]
 gi|151559795|gb|ABS13293.1| DNA repair protein RadA [Ochrobactrum anthropi ATCC 49188]
          Length = 464

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 70/211 (33%), Gaps = 4/211 (1%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG  + L S     E    + SG   LD   G GGF +G  + I G    GK+TL     
Sbjct: 54  KGRAVALTSLSGDIEDAPRIISGISELDRVTG-GGFVRGSALLIGGDPGIGKSTLLTQAA 112

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A     G    +V  E A+  I  R   + + +  +          +I   +  +   D+
Sbjct: 113 AALSNRGHRIVYVSGEEAVAQIRLRAQRLGVASSAVELAA-ETNVEDIIATISDTKRPDL 171

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM-KI 207
           ++IDS+  L            +     A+ M +   K T S       +    Q+   ++
Sbjct: 172 VIIDSIQTLWTDMADSAPGTVTQVRSSAQAMIRYA-KQTGSAVVLVGHVTKDGQIAGPRV 230

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
                       G     Y  +R    R G 
Sbjct: 231 VEHMVDGVLYFEGEGGHHYRILRTVKNRFGP 261


>gi|297695960|ref|XP_002825186.1| PREDICTED: DNA repair protein XRCC3-like [Pongo abelii]
          Length = 346

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 39/109 (35%), Gaps = 7/109 (6%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---GGT---CA 99
           + +S G   LD  L  GG P   I E+ G  S+GKT LAL      Q     GG      
Sbjct: 80  QRLSLGCPVLDALL-RGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAV 138

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           ++  E A      ++L      L    P    Q L     +      D+
Sbjct: 139 YICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEHVADV 187


>gi|258591295|emb|CBE67592.1| DNA repair protein (DNA repair protein) [NC10 bacterium 'Dutch
           sediment']
          Length = 459

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 7/118 (5%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +  VS+G   LD  LG GG   G  V + G    GK+TL L    Q  +  G   +V  
Sbjct: 67  ALNRVSTGLAELDRVLG-GGIVPGSFVLLSGDPGIGKSTLLLQASMQVAQKDGVVLYVSG 125

Query: 104 EHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           E +L    +R  +LG     LL+    + +  LE TD +  +    I+VIDS+  +T 
Sbjct: 126 EESLQQTRSRASRLGPLSDRLLLLAETSLQMILEQTDRIRPT----ILVIDSIQTITS 179


>gi|224538962|ref|ZP_03679501.1| hypothetical protein BACCELL_03859 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224519408|gb|EEF88513.1| hypothetical protein BACCELL_03859 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 53

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 26/38 (68%)

Query: 2  DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQG 39
          +    M   +K KAL+AA+ +I++ +GKG+IM++G + 
Sbjct: 10 ENENNMASSEKLKALQAAMDKIEKSFGKGSIMKMGDES 47


>gi|30584233|gb|AAP36365.1| Homo sapiens X-ray repair complementing defective repair in Chinese
           hamster cells 3 [synthetic construct]
 gi|61371827|gb|AAX43738.1| X-ray repair complementing defective repair in Chinese hamster
           cells 3 [synthetic construct]
 gi|61371833|gb|AAX43739.1| X-ray repair complementing defective repair in Chinese hamster
           cells 3 [synthetic construct]
          Length = 347

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 39/109 (35%), Gaps = 7/109 (6%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---GGT---CA 99
           + +S G   LD  L  GG P   I E+ G  S+GKT LAL      Q     GG      
Sbjct: 80  QRLSLGCPVLDALL-RGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAV 138

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           ++  E A      ++L      L    P    Q L     +      D+
Sbjct: 139 YICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEHVADV 187


>gi|2921500|gb|AAC04805.1| XRCC3 [Homo sapiens]
 gi|15079849|gb|AAH11725.1| X-ray repair complementing defective repair in Chinese hamster
           cells 3 [Homo sapiens]
          Length = 346

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 39/109 (35%), Gaps = 7/109 (6%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---GGT---CA 99
           + +S G   LD  L  GG P   I E+ G  S+GKT LAL      Q     GG      
Sbjct: 80  QRLSLGCPVLDALL-RGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAV 138

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           ++  E A      ++L      L    P    Q L     +      D+
Sbjct: 139 YICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEHVADV 187


>gi|4885659|ref|NP_005423.1| DNA repair protein XRCC3 [Homo sapiens]
 gi|153946427|ref|NP_001093588.1| DNA repair protein XRCC3 [Homo sapiens]
 gi|153946430|ref|NP_001093589.1| DNA repair protein XRCC3 [Homo sapiens]
 gi|20140428|sp|O43542|XRCC3_HUMAN RecName: Full=DNA repair protein XRCC3; AltName: Full=X-ray repair
           cross-complementing protein 3
 gi|20514393|gb|AAM23015.1|AF508041_1 X-ray repair complementing defective repair in Chinese hamster
           cells 3 [Homo sapiens]
 gi|2921390|gb|AAC05368.1| X-ray repair cross-complementing protein 3 [Homo sapiens]
 gi|12654421|gb|AAH01036.1| X-ray repair complementing defective repair in Chinese hamster
           cells 3 [Homo sapiens]
 gi|28071006|emb|CAD61884.1| unnamed protein product [Homo sapiens]
 gi|30583673|gb|AAP36085.1| X-ray repair complementing defective repair in Chinese hamster
           cells 3 [Homo sapiens]
 gi|60655103|gb|AAX32115.1| X-ray repair complementing defective repair in Chinese hamster
           cells 3 [synthetic construct]
 gi|60655105|gb|AAX32116.1| X-ray repair complementing defective repair in Chinese hamster
           cells 3 [synthetic construct]
 gi|119602243|gb|EAW81837.1| X-ray repair complementing defective repair in Chinese hamster
           cells 3, isoform CRA_a [Homo sapiens]
 gi|119602244|gb|EAW81838.1| X-ray repair complementing defective repair in Chinese hamster
           cells 3, isoform CRA_a [Homo sapiens]
 gi|119602245|gb|EAW81839.1| X-ray repair complementing defective repair in Chinese hamster
           cells 3, isoform CRA_a [Homo sapiens]
 gi|119602246|gb|EAW81840.1| X-ray repair complementing defective repair in Chinese hamster
           cells 3, isoform CRA_a [Homo sapiens]
 gi|119602247|gb|EAW81841.1| X-ray repair complementing defective repair in Chinese hamster
           cells 3, isoform CRA_a [Homo sapiens]
 gi|119602248|gb|EAW81842.1| X-ray repair complementing defective repair in Chinese hamster
           cells 3, isoform CRA_a [Homo sapiens]
 gi|123982694|gb|ABM83088.1| X-ray repair complementing defective repair in Chinese hamster
           cells 3 [synthetic construct]
 gi|123997359|gb|ABM86281.1| X-ray repair complementing defective repair in Chinese hamster
           cells 3 [synthetic construct]
 gi|193784889|dbj|BAG54042.1| unnamed protein product [Homo sapiens]
 gi|193785686|dbj|BAG51121.1| unnamed protein product [Homo sapiens]
 gi|193785777|dbj|BAG51212.1| unnamed protein product [Homo sapiens]
 gi|261861620|dbj|BAI47332.1| X-ray repair complementing defective repair in Chinese hamster
           cells 3 [synthetic construct]
          Length = 346

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 39/109 (35%), Gaps = 7/109 (6%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---GGT---CA 99
           + +S G   LD  L  GG P   I E+ G  S+GKT LAL      Q     GG      
Sbjct: 80  QRLSLGCPVLDALL-RGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAV 138

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           ++  E A      ++L      L    P    Q L     +      D+
Sbjct: 139 YICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEHVADV 187


>gi|15606010|ref|NP_213387.1| DNA repair protein RadA [Aquifex aeolicus VF5]
 gi|6647742|sp|O66827|RADA_AQUAE RecName: Full=DNA repair protein RadA homolog; AltName: Full=DNA
           repair protein Sms homolog
 gi|2983190|gb|AAC06790.1| ATP-dependent protease sms [Aquifex aeolicus VF5]
          Length = 444

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 81/226 (35%), Gaps = 16/226 (7%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E  ++G   LD ALG GG  KG+++ I G    GK+TL L  I+     G    +V  E 
Sbjct: 64  ERETTGFESLDNALG-GGLVKGQVILIAGEPGIGKSTLLLQ-ISDRVANGKKVLYVSGEE 121

Query: 106 ALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           +   I   A++LG++ +NLL+         LE     +      ++V+DSV  +      
Sbjct: 122 SGTQIALRAKRLGINNENLLVYPEVN----LEKILQTLEKEKPSLLVLDSVQTIFSERLE 177

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
                 S        +++  ++          I    +    K+            G   
Sbjct: 178 SSAGSVSQVREVTYRITEFCKEKNVPAFIVGQITKEGSIAGPKVLEHIVDTVLQFEGERF 237

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS-PFKQVEF 268
            FY  V++   R GS       TG     K+    +   P     F
Sbjct: 238 NFYRIVKVIKNRFGS-------TGEIAVFKMTDKGLEEVPEPSAFF 276


>gi|268679515|ref|YP_003303946.1| DNA repair protein RadA [Sulfurospirillum deleyianum DSM 6946]
 gi|268617546|gb|ACZ11911.1| DNA repair protein RadA [Sulfurospirillum deleyianum DSM 6946]
          Length = 450

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 53/141 (37%), Gaps = 3/141 (2%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           FE IE  SSG   LD+ LG GG  +G +  I G    GK+TL L       + G    +V
Sbjct: 66  FEQIERYSSGDSELDLVLG-GGIVQGSLTLIGGSPGVGKSTLLLKIAGNLAREGKKVLYV 124

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
             E +   I  R   VD     +      E  L+     +   A ++++IDS+  +    
Sbjct: 125 SGEESSSQIKLRANRVDSNYPTLY--LLSEIRLDTIFKELEKHAFEVLIIDSIQTIYSEK 182

Query: 162 EIEGDMGESLPGMQARLMSQA 182
                   S        + + 
Sbjct: 183 ISSAPGSVSQVREITFELMRF 203


>gi|298530361|ref|ZP_07017763.1| putative circadian clock protein, KaiC [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509735|gb|EFI33639.1| putative circadian clock protein, KaiC [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 562

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 72/243 (29%), Gaps = 11/243 (4%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL----HTIAQSQKTGGTCAFVDAE 104
            +G  GLD  L  GG P GR   + G    GKT L +    H   Q Q+ G   AF + E
Sbjct: 12  PTGIQGLDEVL-DGGLPSGRSTLVCGSAGCGKTLLGMEFLIHGAQQFQEPGVFVAFEETE 70

Query: 105 HALDS---IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
             L          L   ++   +          EI +    S     I ++     T   
Sbjct: 71  EDLARNVASLGYDLTSLVQERKMLVEYVHVAREEIQETGEFSLEGLFIRLEHAINTTGAR 130

Query: 162 EIEGDMGESLPGMQARL--MSQALRKLTSSISRSKCILVFI-NQMRMKIGVMFGSPETTT 218
            +  D  E+L         +   LR+L          ++    Q    +         + 
Sbjct: 131 RVVLDTLETLFSALPNHFILRAELRRLVRWFKDRGVTVILTGEQGEGTMTRHGLEEYVSD 190

Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISF 278
               L       +  RR+  +K + S  G      ++  K  S       ++ +      
Sbjct: 191 CVIMLDHRVINEVCTRRLRVVKYRGSTHGTNEYPFLIDGKGFSVLPVTSLNLQHRVSTER 250

Query: 279 FGE 281
              
Sbjct: 251 VNT 253



 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 69/227 (30%), Gaps = 17/227 (7%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
             E V++G  GLD  L   G+ +G  V I G   +GK+++A H    + + G    +   
Sbjct: 247 STERVNTGITGLDNMLDNQGYYRGSTVLISGTAGTGKSSIAAHFADAAGRRGEKTLYFTY 306

Query: 104 EHALDSIY--ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           E +   +      +G+ L+  +       E A      +    A  +  +       P  
Sbjct: 307 EESPHQVLRNMSSIGIHLEPWINQDVLRFEAARPSVYGIEMHLARIMQCVKEFQ---PSV 363

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
            I   +   L       +   L +L   +       +F +             E ++  +
Sbjct: 364 VIVDPINSLLGESNQPSVKAMLMRLADFLKGQGITALFTSLTIGGRHQESTDTEISSLID 423

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
                  + +   R            N+    +    M    +  EF
Sbjct: 424 TWLLLRDIEISAER------------NRGIYILKSRGMNHSKQIREF 458


>gi|227505963|ref|ZP_03936012.1| DNA repair protein RadA [Corynebacterium striatum ATCC 6940]
 gi|227197485|gb|EEI77533.1| DNA repair protein RadA [Corynebacterium striatum ATCC 6940]
          Length = 458

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 64/195 (32%), Gaps = 18/195 (9%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
             + +++G   LD  LG G  P G +V + G    GK+TL L   ++  +      +V A
Sbjct: 75  ATKTITTGIGELDRVLGKGIVP-GSVVLMAGEPGVGKSTLLLEVASRWAQLDRKALYVTA 133

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E +   + AR        L  +     E  L++    V      +I++DSV  +      
Sbjct: 134 EESTGQVRARA--ERTDALHDTLYLAAESNLDVVFGHVEQLKPSLIIVDSVQTMH----- 186

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
               G                 LT+    +   ++ +  +     V         G   L
Sbjct: 187 --AAGVEGVAGGVAQSRAVTAALTTLAKSTGIPVLLVGHVTKDGNV--------AGPRVL 236

Query: 224 KFYSSVRLDIRRVGS 238
           +    V L+      
Sbjct: 237 EHLVDVVLNFEGDRQ 251


>gi|302385740|ref|YP_003821562.1| DNA repair protein RadA [Clostridium saccharolyticum WM1]
 gi|302196368|gb|ADL03939.1| DNA repair protein RadA [Clostridium saccharolyticum WM1]
          Length = 464

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 70/202 (34%), Gaps = 7/202 (3%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +  + + +G   LD  LG GG  KG +V + G    GK+TL L              ++
Sbjct: 74  LDEQDRMKTGYDELDRVLG-GGVVKGSLVLVGGDPGIGKSTLLLQVCRNLAAGRRKVLYI 132

Query: 102 DAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  I   A ++G    +LL     +    LE+ +  +     D+++IDS+  +  
Sbjct: 133 SGEESLKQIKLRANRIGEVKGDLLFLCETS----LELIEGAIVEEKPDVVIIDSIQTMFR 188

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
                     S       ++ Q  +    +I     +         ++            
Sbjct: 189 EEISSAPGSVSQVRESTNILLQIAKGAGIAIFIVGHVTKEGVVAGPRVLEHMVDTVLYFE 248

Query: 220 GNALKFYSSVRLDIRRVGSIKD 241
           G+    Y  +R    R GS  +
Sbjct: 249 GDRSASYRIIRGVKNRFGSTNE 270


>gi|148652636|ref|YP_001279729.1| DNA repair protein RadA [Psychrobacter sp. PRwf-1]
 gi|148571720|gb|ABQ93779.1| DNA repair protein RadA [Psychrobacter sp. PRwf-1]
          Length = 482

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 64/156 (41%), Gaps = 12/156 (7%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQS 91
           LGS    F+    + +G    D  LG GG   G +V I G    GK+T+ L T   +A  
Sbjct: 82  LGSVNVTFDT--RLPTGISEFDRVLG-GGLVAGSVVLIGGDPGIGKSTILLQTAANMADP 138

Query: 92  QKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           +   G+  +V  E +L  +   A++LG+   +L +          E     +      + 
Sbjct: 139 ESLSGSALYVTGEESLSQVAMRAQRLGLSSDHLKVMTETNV----ETICAALTQEQPAVA 194

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           +IDS+  +   A      G S     A ++++  ++
Sbjct: 195 IIDSIQTIYTDAINSAPGGVSQIRESAAMLTRYAKQ 230


>gi|255718911|ref|XP_002555736.1| KLTH0G16148p [Lachancea thermotolerans]
 gi|238937120|emb|CAR25299.1| KLTH0G16148p [Lachancea thermotolerans]
          Length = 478

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 63/200 (31%), Gaps = 23/200 (11%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAF 100
             +SG   +D  LG GG     I EI+G  S+GK+   +      Q         G C +
Sbjct: 86  AFTSGDRDVDDLLG-GGLRTHGITEIFGSSSTGKSQFLMQLSLCVQLPKSLGGLDGKCVY 144

Query: 101 VDAEHALDSIYARKL-----------GVDLKNLLISQPDTGEQALEITDML----VRSGA 145
           +  E  L +    ++            +   N+     +       I ++     +    
Sbjct: 145 ITTEGDLPTRRLDEMIRSKSQKDGFQSLSQDNIFTVNCNDLANQEHILNVQLPILMERNH 204

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
              ++I    +   R E+E    +         + +  + L +   +    +V  NQ+  
Sbjct: 205 DIRLIIVDSVSHHVRVELERRSFKDS-QDNRHYVDKMAQNLLNFSIKHSVAVVVANQVGD 263

Query: 206 KIGVMFGSPETTTGGNALKF 225
           K        +++       +
Sbjct: 264 KPLPEAKLADSSVERGPANY 283


>gi|154173957|ref|YP_001408110.1| DNA repair protein RadA [Campylobacter curvus 525.92]
 gi|112803126|gb|EAU00470.1| DNA repair protein RadA [Campylobacter curvus 525.92]
          Length = 446

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 67/191 (35%), Gaps = 18/191 (9%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I   S+    LD+ LG GG  +G +V I G    GK+TL L   +   K G    +V 
Sbjct: 66  ENINRFSTKDSELDLVLG-GGVVEGSLVLIGGSPGIGKSTLLLKIASNLAKDGRKTLYVS 124

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E +   I  R     L+ +        E  LE     ++     I+VIDS+  L     
Sbjct: 125 GEESASQIKMRAQ--RLEAIDEKLYLLTEICLENITAEIQKNDYKILVIDSIQTLYSEEV 182

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
                  S        + +        +++ K I +FI     K G +        G   
Sbjct: 183 SSAPGSISQVREITFELMR--------LAKDKNICIFIIGHITKEGSI-------AGPRV 227

Query: 223 LKFYSSVRLDI 233
           L+    V L  
Sbjct: 228 LEHMVDVVLYF 238


>gi|195144506|ref|XP_002013237.1| GL23505 [Drosophila persimilis]
 gi|194102180|gb|EDW24223.1| GL23505 [Drosophila persimilis]
          Length = 348

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 67/209 (32%), Gaps = 20/209 (9%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCA 99
             VS G   LD   G GG     I EI G    GKT L L      Q        G   A
Sbjct: 86  SRVSFGCSALDRCTG-GGVVTRGITEICGAAGVGKTQLLLQLALCVQLPLKLGGLGRGVA 144

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           ++  E A  +    ++   L+     +       + +      S  +   V + +  L  
Sbjct: 145 YICTEDAFPARRMLEMSKALEARYPQEQLNFLGNIFVEHQY-ESQPLINCVSNRLPRLLQ 203

Query: 160 RAEIEGDMGESLPG---------MQARLMSQALRKLTSSISRSKCILVFINQMRMK---I 207
           +  I   + +S+            +AR M +    L S   +  C +V +NQ+      +
Sbjct: 204 QHSIGLIIIDSVAAIFRLYTDFLERARQMRRLADALISYADKYNCAVVCVNQVASSGSGL 263

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRV 236
                  E    G         R+ I RV
Sbjct: 264 ATGSLQDEVPCLGLQWAHLGRTRMRISRV 292


>gi|55377059|ref|YP_134909.1| RecA/helicase-like [Haloarcula marismortui ATCC 43049]
 gi|55229784|gb|AAV45203.1| RecA/helicase-like [Haloarcula marismortui ATCC 43049]
          Length = 496

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/260 (17%), Positives = 85/260 (32%), Gaps = 15/260 (5%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +SSG  GLD  L  GG  +GR+  + GP  +GKT L    +    + G    F+ AE + 
Sbjct: 11  LSSGISGLDSLL-RGGLVEGRLYLVIGPPGTGKTLLGTQFLEAGLEAGDDVLFIHAEESA 69

Query: 108 DSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLV---RSGAVDIIVIDSVAALTPRAE 162
             + A   +LG+D+ N          +  E  +           D  +I  +     R +
Sbjct: 70  SDLRANTAELGIDISNATFLDVGPDSEFFEEAESYDVVKPRDVEDGHLISDIREAIERVD 129

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
            +  + + +   Q    ++   +                 +  K        +  +  + 
Sbjct: 130 PDRVLIDPITHFQYLEPTEYQFRKRVISFARFLQDRETTVLATKTPSNQMDTQLRSLSDG 189

Query: 223 LKFYSS--------VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI-MYG 273
           +   S         +RL   R    +D       +     V   +    +   FD   + 
Sbjct: 190 IISLSYGDEKAGRRIRLRKHRGIGQQDGSHGMEIRDSGVEVYPALEPEQRTRSFDPTQFS 249

Query: 274 EGISFFGELIDLGVKASIVD 293
            G+     L+D G++   V 
Sbjct: 250 AGVPELDSLLDGGLERGTVT 269



 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 51/158 (32%), Gaps = 4/158 (2%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG--GTCAFVDAEH 105
            S+G   LD  L  GG  +G +  + GP   GK+T A   +A +   G        D   
Sbjct: 248 FSAGVPELDSLL-DGGLERGTVTILSGPSGVGKSTTATEFLASAAADGSPALAYLFDESI 306

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA-LTPRAEIE 164
              S      G+ L  L        E+   +               +   A L     I 
Sbjct: 307 DTFSHRCETFGIPLSELRDEGTLLVEEVESLALSPEEFANRVKTQAEERGAELVVIDGIA 366

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           G       G     + + L  LT  ++R    +V I+Q
Sbjct: 367 GYKNAIKRGQDDVELRRRLHALTQQLTRGNTAVVLIDQ 404


>gi|271499061|ref|YP_003332086.1| DNA repair protein RadA [Dickeya dadantii Ech586]
 gi|270342616|gb|ACZ75381.1| DNA repair protein RadA [Dickeya dadantii Ech586]
          Length = 461

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 66/158 (41%), Gaps = 9/158 (5%)

Query: 30  GAIMQLGSQGSI-FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           G++ ++     I  E +   S+G L  D  LG GG   G  + I G   +GK+TL L T+
Sbjct: 59  GSVSRVQKLSDISLEALPRFSTGFLEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTL 117

Query: 89  AQSQKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            +  +      +V  E +L  +  R  +LG+  +++ +    + EQ   I +        
Sbjct: 118 CKLSEQ-MKTLYVTGEESLQQVAMRAHRLGLPAQHINMLSETSIEQICLIAE----QEQP 172

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
            ++VIDS+  +            +     A  +++  +
Sbjct: 173 KLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAK 210


>gi|256831733|ref|YP_003160460.1| DNA repair protein RadA [Jonesia denitrificans DSM 20603]
 gi|256685264|gb|ACV08157.1| DNA repair protein RadA [Jonesia denitrificans DSM 20603]
          Length = 453

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 7/137 (5%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
            +   +G    D  LG GG   G ++ + G    GK+TL L   A + ++G T  +V AE
Sbjct: 68  TQARPTGIDEFDRVLG-GGLVPGAVILLAGEPGVGKSTLLLDVAATTARSGRTVLYVTAE 126

Query: 105 HALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            +   +   A ++G    NL ++      Q L      V +   D++++DSV  +     
Sbjct: 127 ESAGQVRLRAERIGALDDNLYLASEVDLGQVLA----HVNAVTPDLLIVDSVQTIASTQV 182

Query: 163 IEGDMGESLPGMQARLM 179
                G +     A  +
Sbjct: 183 DGAAGGVAQVKEVASAV 199


>gi|12854237|dbj|BAB29970.1| unnamed protein product [Mus musculus]
 gi|148670700|gb|EDL02647.1| RAD51-like 1 (S. cerevisiae), isoform CRA_a [Mus musculus]
          Length = 258

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 62/190 (32%), Gaps = 27/190 (14%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI----- 88
           +L ++ S       +S+    LD AL  GG P G + EI GP   GKT   +        
Sbjct: 69  ELKTRRSAHLSPAFLSTTLCALDEAL-HGGVPCGSLTEITGPPGCGKTQFCIMMSVLATL 127

Query: 89  -AQSQKTGGTCAFVDAEHALDSIYARKL------------------GVDLKNLLISQPDT 129
                   G   ++D E A  +    ++                     +        + 
Sbjct: 128 PTSLGGLEGAVVYIDTESAFTAERLVEIAESRFPQYFNTEEKLLLTSSRVHLCRELTCEG 187

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
             Q LE  +  + S  V ++++DS+A++  +       G      + + + +    L   
Sbjct: 188 LLQRLESLEEEIISKGVKLVIVDSIASVVRKEFDPKLQGN--IKERNKFLGKGASLLKYL 245

Query: 190 ISRSKCILVF 199
                  + F
Sbjct: 246 AGEFSIPVTF 255


>gi|194217198|ref|XP_001500693.2| PREDICTED: similar to RAD51 homolog C [Equus caballus]
          Length = 419

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 73/225 (32%), Gaps = 46/225 (20%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           + +    LD  LG GG P  +  EI G    GKT L +      Q         G   F+
Sbjct: 139 IITFCSALDNILG-GGVPLTKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVEGEAVFI 197

Query: 102 DAEHA------------------------LDSIYARK-----LGVDLKNLLISQPDTGEQ 132
           D E +                        L   Y++      L   L ++   +     +
Sbjct: 198 DTEGSFMVDRVVDIANACIQHLQLIAGTHLGEEYSKALEDFTLENILSHIYYFRCRDYTE 257

Query: 133 ALE---ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
            L    +    +   +   +VI    A   R +++         ++ RL++   +++ S 
Sbjct: 258 LLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDD------LSLRTRLLNGLAQQMISL 311

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
            +  +  ++  NQM  KI           G +     +++RL   
Sbjct: 312 ANNHRLAVILTNQMTTKIDRNQALLVPALGES-WGHAATIRLIFH 355


>gi|254416769|ref|ZP_05030519.1| circadian clock protein KaiC [Microcoleus chthonoplastes PCC 7420]
 gi|196176509|gb|EDX71523.1| circadian clock protein KaiC [Microcoleus chthonoplastes PCC 7420]
          Length = 505

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 3/92 (3%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
           +Q    E IE V +G  G D  L  GG PKGR   + G   S KT  A   + +  K G 
Sbjct: 2   TQQQPPEFIEKVKTGISGFD-LLSEGGLPKGRTTLVAGTAGSAKTIFACQFLVEGIKEGQ 60

Query: 97  TCAFVDAEHA--LDSIYARKLGVDLKNLLISQ 126
              FV  E +        R  G D++     +
Sbjct: 61  NGVFVTFEESPQAIRKNMRGFGWDIEQWEAEK 92



 Score = 40.2 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 13/132 (9%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + V+SG+  LD   G GGF +  I+ + G   +GKT +    +A     G  C     E 
Sbjct: 254 QRVTSGNAELDGMCG-GGFFRDSIILVSGATGTGKTLIVTEFLAGGVNNGEKCLLFAFEE 312

Query: 106 ALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDMLVRSGAVDIIVIDS 153
           + + ++    G   +           +    P+    E  L     L+     D + +DS
Sbjct: 313 SQEQLFRNASGWGREFEQMEQEGKLKVFCRYPEETGLENHLVKIKQLIEEFQPDRVAVDS 372

Query: 154 VAALTPRAEIEG 165
           ++A+   A ++G
Sbjct: 373 LSAMEKIAPLKG 384


>gi|145323780|ref|NP_001077479.1| RAD51D (ARABIDOPSIS HOMOLOG OF RAD51 D); ATP binding / DNA binding
           / DNA-dependent ATPase [Arabidopsis thaliana]
 gi|332190053|gb|AEE28174.1| DNA repair protein RAD51-like 4 [Arabidopsis thaliana]
          Length = 304

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 86/256 (33%), Gaps = 33/256 (12%)

Query: 2   DYRKEMNIVDKSKA-LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
            + +     D+ K  +   LS I+R   +  +  L     +      +S+G    D  L 
Sbjct: 25  AFSQRQTNADRLKEGITLILSLIERQ-CRPLVNGLKLLEDLHRNKHTLSTGDKETDSLL- 82

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GTCAFVDAEHALDSIYARKL---- 115
            GGF +G++ E+ GP SSGKT   +   A   +   G   ++D  ++  +    +     
Sbjct: 83  QGGFREGQLTELVGPSSSGKTQFCMQAAASVAENHLGRVLYLDTGNSFSARRIAQFICSS 142

Query: 116 ---------------GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL-TP 159
                                  +       +      M V    + ++V+DS+++L TP
Sbjct: 143 SDATLGQKVMSRILCHTVYDIYTLFDTLQDLEITLRLQMNVNESRLRLLVVDSISSLITP 202

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
                G  G +L      L+ +   + + +I  +   +              G       
Sbjct: 203 ILGGSGSQGRALMVAIGYLLKKLAHEHSIAILVTNHTVG---------AGGEGGKTKPAL 253

Query: 220 GNALKFYSSVRLDIRR 235
           G   K    VRL + R
Sbjct: 254 GETWKSIPHVRLSLSR 269


>gi|8439892|gb|AAF75078.1|AC007583_14 Contains similarity to DNA repair protein RAD51 homolog 4 (TRAD)
           from Homo sapiens gi|6174940 [Arabidopsis thaliana]
          Length = 285

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 86/256 (33%), Gaps = 33/256 (12%)

Query: 2   DYRKEMNIVDKSKA-LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
            + +     D+ K  +   LS I+R   +  +  L     +      +S+G    D  L 
Sbjct: 21  AFSQRQTNADRLKEGITLILSLIERQ-CRPLVNGLKLLEDLHRNKHTLSTGDKETDSLL- 78

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GTCAFVDAEHALDSIYARKL---- 115
            GGF +G++ E+ GP SSGKT   +   A   +   G   ++D  ++  +    +     
Sbjct: 79  QGGFREGQLTELVGPSSSGKTQFCMQAAASVAENHLGRVLYLDTGNSFSARRIAQFICSS 138

Query: 116 ---------------GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL-TP 159
                                  +       +      M V    + ++V+DS+++L TP
Sbjct: 139 SDATLGQKVMSRILCHTVYDIYTLFDTLQDLEITLRLQMNVNESRLRLLVVDSISSLITP 198

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
                G  G +L      L+ +   + + +I  +   +              G       
Sbjct: 199 ILGGSGSQGRALMVAIGYLLKKLAHEHSIAILVTNHTVG---------AGGEGGKTKPAL 249

Query: 220 GNALKFYSSVRLDIRR 235
           G   K    VRL + R
Sbjct: 250 GETWKSIPHVRLSLSR 265


>gi|71065487|ref|YP_264214.1| DNA repair protein RadA [Psychrobacter arcticus 273-4]
 gi|71038472|gb|AAZ18780.1| putative DNA repair protein radA [Psychrobacter arcticus 273-4]
          Length = 482

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 61/158 (38%), Gaps = 8/158 (5%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           A+M L +     +    + +G    D  LG GG   G +V I G    GK+T+ L T   
Sbjct: 78  AVMPLNAVSVGLDT--RLPTGISEFDRVLG-GGLVAGSVVLIGGDPGIGKSTILLQTATN 134

Query: 91  SQKTG---GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
             K     G+  +V  E +L  +  R   +DL    +      E  +E     +      
Sbjct: 135 MAKADSLAGSALYVTGEESLAQVAMRAKRLDLPADRLRV--LAETNVETICAALTQEQPA 192

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           I +IDS+  +   A      G S     A ++++  ++
Sbjct: 193 IAIIDSIQTIYTDAINSAPGGVSQIRESAAILTRYAKQ 230


>gi|145335240|ref|NP_172254.2| RAD51D (ARABIDOPSIS HOMOLOG OF RAD51 D); ATP binding / DNA binding
           / DNA-dependent ATPase [Arabidopsis thaliana]
 gi|83305360|sp|Q9LQQ2|RA51D_ARATH RecName: Full=DNA repair protein RAD51 homolog 4; Short=AtRAD51D
 gi|57283103|emb|CAD70703.1| putative DNA recombination protein [Arabidopsis thaliana]
 gi|58430742|dbj|BAD89165.1| AtRAD51D [Arabidopsis thaliana]
 gi|90969171|gb|ABE02570.1| RAD51D splice variant a [Arabidopsis thaliana]
 gi|90969179|gb|ABE02658.1| RAD51D splice variant a [Arabidopsis thaliana]
 gi|332190052|gb|AEE28173.1| DNA repair protein RAD51-like 4 [Arabidopsis thaliana]
          Length = 322

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 86/256 (33%), Gaps = 33/256 (12%)

Query: 2   DYRKEMNIVDKSKA-LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
            + +     D+ K  +   LS I+R   +  +  L     +      +S+G    D  L 
Sbjct: 43  AFSQRQTNADRLKEGITLILSLIERQ-CRPLVNGLKLLEDLHRNKHTLSTGDKETDSLL- 100

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GTCAFVDAEHALDSIYARKL---- 115
            GGF +G++ E+ GP SSGKT   +   A   +   G   ++D  ++  +    +     
Sbjct: 101 QGGFREGQLTELVGPSSSGKTQFCMQAAASVAENHLGRVLYLDTGNSFSARRIAQFICSS 160

Query: 116 ---------------GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL-TP 159
                                  +       +      M V    + ++V+DS+++L TP
Sbjct: 161 SDATLGQKVMSRILCHTVYDIYTLFDTLQDLEITLRLQMNVNESRLRLLVVDSISSLITP 220

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
                G  G +L      L+ +   + + +I  +   +              G       
Sbjct: 221 ILGGSGSQGRALMVAIGYLLKKLAHEHSIAILVTNHTVG---------AGGEGGKTKPAL 271

Query: 220 GNALKFYSSVRLDIRR 235
           G   K    VRL + R
Sbjct: 272 GETWKSIPHVRLSLSR 287


>gi|93006313|ref|YP_580750.1| DNA repair protein RadA [Psychrobacter cryohalolentis K5]
 gi|92393991|gb|ABE75266.1| DNA repair protein RadA [Psychrobacter cryohalolentis K5]
          Length = 481

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 61/158 (38%), Gaps = 8/158 (5%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           A+M L +     +    + +G    D  LG GG   G +V I G    GK+T+ L T   
Sbjct: 77  AVMPLNAVSVGLDT--RLPTGISEFDRVLG-GGLVAGSVVLIGGDPGIGKSTILLQTATN 133

Query: 91  SQKTG---GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
             K     G+  +V  E +L  +  R   +DL    +      E  +E     +      
Sbjct: 134 MAKADSLAGSALYVTGEESLAQVAMRAKRLDLPADRLRV--LAETNVETICAALTQEQPA 191

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           I +IDS+  +   A      G S     A ++++  ++
Sbjct: 192 IAIIDSIQTIYTDAINSAPGGVSQIRESAAILTRYAKQ 229


>gi|330919812|ref|XP_003298770.1| hypothetical protein PTT_09575 [Pyrenophora teres f. teres 0-1]
 gi|311327906|gb|EFQ93157.1| hypothetical protein PTT_09575 [Pyrenophora teres f. teres 0-1]
          Length = 412

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 9/69 (13%)

Query: 47  VVSSGSLGLDIALG---------IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
            VS+G   LD  L           GG+ +G++ E++GP   GKT   +     +   G  
Sbjct: 34  TVSTGITQLDKVLSPPSLPGHDVSGGYTRGKVTEVFGPSGVGKTAFGIQAAVSALSEGQQ 93

Query: 98  CAFVDAEHA 106
             +VDA  A
Sbjct: 94  VIWVDAACA 102


>gi|254712988|ref|ZP_05174799.1| DNA repair protein RadA [Brucella ceti M644/93/1]
 gi|254716658|ref|ZP_05178469.1| DNA repair protein RadA [Brucella ceti M13/05/1]
 gi|261218459|ref|ZP_05932740.1| DNA repair protein RadA [Brucella ceti M13/05/1]
 gi|261320691|ref|ZP_05959888.1| DNA repair protein RadA [Brucella ceti M644/93/1]
 gi|260923548|gb|EEX90116.1| DNA repair protein RadA [Brucella ceti M13/05/1]
 gi|261293381|gb|EEX96877.1| DNA repair protein RadA [Brucella ceti M644/93/1]
          Length = 467

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 76/217 (35%), Gaps = 6/217 (2%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG  + L S     E    + SG   LD   G GGF +G  + I G    GK+TL     
Sbjct: 54  KGRAVALTSLSGEIEDAPRIISGISELDRVTG-GGFVRGSALLIGGDPGIGKSTLLTQAA 112

Query: 89  AQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALE-ITDMLVRSGA 145
           A     G    +V  E A+  I   A++LGV    + ++     E  +  I+     S  
Sbjct: 113 AALSNRGHRIVYVSGEEAVAQIRLRAQRLGVAASAVELAAETNVEDIIATISSDNSGSKR 172

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
            D+++IDS+  L            +     A+ M +   K T +       +    Q+  
Sbjct: 173 PDLVIIDSIQTLWTDMADSAPGTVTQVRSSAQAMIRYA-KQTGAAVVLVGHVTKDGQIAG 231

Query: 206 -KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241
            ++            G     Y  +R    R G   +
Sbjct: 232 PRVVEHMVDGVLYFEGEGGHHYRILRTVKNRFGPTNE 268


>gi|124360172|gb|ABD33114.2| RecA bacterial DNA recombination protein [Medicago truncatula]
          Length = 269

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 66/221 (29%), Gaps = 45/221 (20%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +++  L LD  LG GG     + EI G    GKT + +      Q        GG   ++
Sbjct: 11  ITTSCLDLDNILG-GGINCKEVTEIGGVPGIGKTQIGIQLAVNVQIPLDYGGLGGKAIYI 69

Query: 102 DAEHALDSIYARKL----------------------------GVDLKNLLISQPDTGEQA 133
           D E +       ++                               L+N+   +  +  + 
Sbjct: 70  DTEGSFMVERVLQIAEACIEDLSEYSHHFYKDNQAFGVKMHPNSILENIFYFRVCSYTEQ 129

Query: 134 LEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           + +    D  V       I+I        R + +         ++ RL+ +   KL    
Sbjct: 130 IALVNYLDKFVTEHKDVKIIIIDSVTFHFRQDFDD------MALRTRLLGEMSLKLMKLA 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
                 +V +NQ+  K            G +      + R+
Sbjct: 184 KNFSLAVVMLNQVTTKHIEGSFQLTLALGDS-WSHSCTNRI 223


>gi|317507822|ref|ZP_07965523.1| DNA repair protein RadA [Segniliparus rugosus ATCC BAA-974]
 gi|316253864|gb|EFV13233.1| DNA repair protein RadA [Segniliparus rugosus ATCC BAA-974]
          Length = 460

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 51/138 (36%), Gaps = 5/138 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +G    D  LG  G   G +V + G    GK+TL L T  Q    G  C +V  E +  
Sbjct: 75  PTGIREFDRVLGK-GLVAGSVVLLAGEPGVGKSTLLLETAKQWALAGRRCLYVSGEES-- 131

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            + AR     +  +      T E  LE           +++V+DSV  L    E  G + 
Sbjct: 132 PLQARARAERIGAVHEGVLFTAETRLEAILASCVELKPELVVVDSVQMLRSAGEASGAI- 190

Query: 169 ESLPGMQARLMSQALRKL 186
            S      R  S   + L
Sbjct: 191 -SQIQEAVRRFSALAKSL 207


>gi|210623125|ref|ZP_03293591.1| hypothetical protein CLOHIR_01541 [Clostridium hiranonis DSM 13275]
 gi|210153802|gb|EEA84808.1| hypothetical protein CLOHIR_01541 [Clostridium hiranonis DSM 13275]
          Length = 459

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 69/206 (33%), Gaps = 7/206 (3%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
                +  E  SSG   L+  LG GG  +G +V + G    GK+TL L       ++G  
Sbjct: 63  NSITIKHEERFSSGINELNRVLG-GGIVRGSLVLVGGDPGIGKSTLLLQVSESVAQSGKK 121

Query: 98  CAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
             ++  E +   I   A +L    +NL I   +     L I +  +     D+I++DS+ 
Sbjct: 122 VLYISGEESESQIKMRAERLNAKSENLFIMAENN----LNIIEHNLEGFDPDLIILDSIQ 177

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            +            S          +  +K+  S      +         KI        
Sbjct: 178 TVFTPDIASAPGTVSQIKEGTSRFMRISKKMGISTFVVGHVTKEGALAGPKIMEHMVDTV 237

Query: 216 TTTGGNALKFYSSVRLDIRRVGSIKD 241
               G     Y  +R    R GS  +
Sbjct: 238 LYFEGERYNTYRLIRAVKNRFGSTNE 263


>gi|152986317|ref|YP_001350581.1| DNA repair protein RadA [Pseudomonas aeruginosa PA7]
 gi|150961475|gb|ABR83500.1| DNA repair protein RadA [Pseudomonas aeruginosa PA7]
          Length = 453

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 53/144 (36%), Gaps = 4/144 (2%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E +   ++GS  LD  LG GG   G +V I G    GK+T+ L T+           +V
Sbjct: 65  VEEMPRFTTGSAELDRVLG-GGLVDGSVVLIGGDPGIGKSTILLQTLCNLATR-VPALYV 122

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
             E +   +  R     L           E ++E      R     ++VIDS+  +    
Sbjct: 123 TGEESQQQVAMRA--RRLSLPEDRLKVMTETSIETIIATARQEQPRVMVIDSIQTIFTEQ 180

Query: 162 EIEGDMGESLPGMQARLMSQALRK 185
                 G +     A ++ +  ++
Sbjct: 181 LQSAPGGVAQVRESAAMLVRYAKQ 204


>gi|255079114|ref|XP_002503137.1| Rad51 DNA recombinase 4 [Micromonas sp. RCC299]
 gi|226518403|gb|ACO64395.1| Rad51 DNA recombinase 4 [Micromonas sp. RCC299]
          Length = 292

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 1/108 (0%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
              +  + +G  G+D  L  GG  +G++ E+ G   SGKT L L   A +   G    ++
Sbjct: 29  LSKLNFLPTGCDGIDDLL-EGGLRQGQVTELTGEAGSGKTQLCLSAAASAAALGHRVVYL 87

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           D      +   ++             +  +      D++      DI+
Sbjct: 88  DTGGGFSAKRIKEFHRGFVTADADSAEVEQHLSLTLDLITVLNVHDIL 135


>gi|251792117|ref|YP_003006837.1| DNA repair protein RadA [Aggregatibacter aphrophilus NJ8700]
 gi|247533504|gb|ACS96750.1| DNA repair protein RadA [Aggregatibacter aphrophilus NJ8700]
          Length = 457

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +     SSG   LD  LG GG   G  + I G   +GK+TL L  +    +   T  +V
Sbjct: 68  LQETPRFSSGFKELDRVLG-GGVVPGSAILIGGHPGAGKSTLLLQVMCDLSQK-MTALYV 125

Query: 102 DAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +   A++LG+  + L +    + EQ   + D L       IIVIDS+  +  
Sbjct: 126 TGEESLQQVAMRAKRLGLPPEKLHMLSETSVEQICHLADQLKPQ----IIVIDSIQVMHL 181

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     +     A  +++  +    +I  
Sbjct: 182 ADIQSSPGSVAQVRECASFLTRYAKTRQVAIVM 214


>gi|296113220|ref|YP_003627158.1| DNA repair protein RadA [Moraxella catarrhalis RH4]
 gi|295920914|gb|ADG61265.1| DNA repair protein RadA [Moraxella catarrhalis RH4]
 gi|326560213|gb|EGE10601.1| DNA repair protein RadA [Moraxella catarrhalis 7169]
 gi|326562772|gb|EGE13068.1| DNA repair protein RadA [Moraxella catarrhalis 103P14B1]
 gi|326566470|gb|EGE16620.1| DNA repair protein RadA [Moraxella catarrhalis BC1]
 gi|326567882|gb|EGE17983.1| DNA repair protein RadA [Moraxella catarrhalis 12P80B1]
 gi|326570276|gb|EGE20321.1| DNA repair protein RadA [Moraxella catarrhalis BC8]
 gi|326571013|gb|EGE21037.1| DNA repair protein RadA [Moraxella catarrhalis BC7]
 gi|326573311|gb|EGE23279.1| DNA repair protein RadA [Moraxella catarrhalis 101P30B1]
 gi|326575793|gb|EGE25716.1| DNA repair protein RadA [Moraxella catarrhalis CO72]
 gi|326576873|gb|EGE26779.1| DNA repair protein RadA [Moraxella catarrhalis O35E]
          Length = 472

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 89/278 (32%), Gaps = 27/278 (9%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           A+M L   G   E    + +G    D  LG GG   G +V I G    GK+T+ L T   
Sbjct: 65  AVMTLDHVGVTLET--RMPTGIGEFDRVLG-GGLVAGSVVLIGGDPGIGKSTILLQTAIN 121

Query: 91  SQKTG---GTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
                   G+  ++  E +L  +  R  +LG+    L +      +         + +  
Sbjct: 122 MAAGDSLSGSALYITGEESLSQVAMRAVRLGLPTDRLRVLAETNVD----TICAALTTEQ 177

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
             I VIDS+  L   A      G +     A +       LT    ++   L  +  +  
Sbjct: 178 PAIAVIDSIQTLFTEAIQSAPGGVAQIRESAAV-------LTRYAKQTGTALFLVGHVTK 230

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS-PFK 264
           +  +             L F        R + +IK++           +    +      
Sbjct: 231 EGALAGPRVLEHMVDTVLYFEGESDSRFRMIRAIKNRFGAVNELGIFGMTDTGLKEVANP 290

Query: 265 QVEFDIMYGE---G----ISFFGELIDLGVKASIVDKS 295
              F   Y +   G    +S  G    L    ++VD S
Sbjct: 291 SAIFLSRYDKPIAGSVVMVSREGTRPLLVEVQALVDDS 328


>gi|114326990|ref|YP_744147.1| DNA repair protein RadA [Granulibacter bethesdensis CGDNIH1]
 gi|114315164|gb|ABI61224.1| DNA repair protein RadA [Granulibacter bethesdensis CGDNIH1]
          Length = 460

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 2/123 (1%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           L + G+       +++G   LD  LG GG   G ++ + G    GK+TL L   A   + 
Sbjct: 56  LPASGADAAPPPRIATGIEELDRVLG-GGLVPGSVILVGGDPGIGKSTLMLQAAAALARA 114

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           GG   +V  E A++ +  R   + L +  +    +G    +I   L  +    ++VIDS+
Sbjct: 115 GGRALYVSGEEAVEQVRLRARRLHLADAPLELAASG-HVRDIAATLETARDAALVVIDSI 173

Query: 155 AAL 157
             +
Sbjct: 174 QTM 176


>gi|209946378|gb|ACI97420.1| spindle B [Drosophila melanogaster]
          Length = 341

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 77/238 (32%), Gaps = 25/238 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCA 99
             VS G   LD   G GG     I E+ G    GKT L L      Q        G   A
Sbjct: 86  SRVSFGCSALDRCTG-GGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVA 144

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           ++  E +  +    ++    +             + + +  + +  +   VI+ +  L  
Sbjct: 145 YICTESSFPARRLLQMSKACEKRHPEMELNFLGNIFV-ENHIEAEPLLACVINRIPRLMQ 203

Query: 160 RAEIEGDMGESLPG---------MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +  I   + +S+            +AR M +      S   +  C +V +NQ+  + G  
Sbjct: 204 QHGIGLIIIDSVAAIFRLYNDYLERARHMRRLADAXXSYADKYNCAVVCVNQVATRDG-- 261

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
               E    G         RL + RV     K    G+Q         + SP    +F
Sbjct: 262 --QDEIPCLGLQWAHLGRTRLRVSRVP----KQHRMGDQLITVRKLEILYSPETPNDF 313


>gi|168181834|ref|ZP_02616498.1| DNA repair protein RadA [Clostridium botulinum Bf]
 gi|237796971|ref|YP_002864523.1| DNA repair protein RadA [Clostridium botulinum Ba4 str. 657]
 gi|182674723|gb|EDT86684.1| DNA repair protein RadA [Clostridium botulinum Bf]
 gi|229262687|gb|ACQ53720.1| DNA repair protein RadA [Clostridium botulinum Ba4 str. 657]
          Length = 452

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 62/165 (37%), Gaps = 13/165 (7%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + +G   L+  LG GG  KG +  I G    GK+T+ L          G   +V  E 
Sbjct: 66  ERLDTGINELNRVLG-GGIVKGSLTLISGSPGIGKSTILLQAANNIATKYGKILYVSGEE 124

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           + + I  R     LK +        E  ++I    + +     ++IDS+  L  ++E+  
Sbjct: 125 SEEQIKMRA--DRLKVISKDIYILSETNVDIIKEHITTINPKFVIIDSIQTLF-KSELSS 181

Query: 166 DMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
             G  S     +  +          IS+S  I  FI     K G 
Sbjct: 182 APGTVSQVRQCSNDIM--------LISKSNNIPFFIVAHVTKQGE 218


>gi|322696544|gb|EFY88335.1| DNA repair protein (Rad57), putative [Metarhizium acridum CQMa 102]
          Length = 482

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 65/195 (33%), Gaps = 25/195 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-----KTGGTCAFVD 102
           +S+    +D AL   G P   I EI G   +GKT   L      Q       G    ++ 
Sbjct: 127 ISTLCPQIDAALNS-GIPTSSITEITGESGAGKTQFLLSLCLAVQLPPPHGLGKQALYIS 185

Query: 103 AEHALDSIYARKL--------------GVDLKNLLISQPD---TGEQALEITDMLVRSGA 145
            E +L +    ++                 L N+L +      + +  LE    ++ S  
Sbjct: 186 TESSLATKRLSQILASNPLLQDIDFADRPSLDNILSAVTPDLESQDHILEYQVPVLLSRH 245

Query: 146 VDIIVIDSVAALTPRAEIE--GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
              +++    A   RAE E  G    S    ++  + +    L     R    +V  NQ+
Sbjct: 246 NIGLLVIDSVAANYRAEFERAGSSYGSNMAARSAELVRLGALLRDLARRHDIAVVVANQV 305

Query: 204 RMKIGVMFGSPETTT 218
             +       P T +
Sbjct: 306 SDRFSSPAPLPPTMS 320


>gi|321254869|ref|XP_003193227.1| hypothetical protein CGB_C7740W [Cryptococcus gattii WM276]
 gi|317459696|gb|ADV21440.1| hypothetical protein CNBC1760 [Cryptococcus gattii WM276]
          Length = 321

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 84/249 (33%), Gaps = 20/249 (8%)

Query: 34  QLGSQGSIFEGI-EVVSSGSLGLDIALGI-GGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           +L S     + I   +  G  GLD  LG   G     I+EI GP   GK+ LALH     
Sbjct: 68  RLASDVDNCKIIGPWLGFGVKGLDELLGDWDGV---GILEIAGPRKVGKSLLALHAALNV 124

Query: 92  QKTG--GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
                   C ++D+E       ARK+   L+   I    +    + +          + +
Sbjct: 125 LVEDPQAICTWMDSEGTFTPERARKV---LEAWRIENATSVLHRIMVVPCFKLEDMFEAL 181

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL-----VFINQMR 204
                A        +G             ++ +   ++  I+ +   +        N++ 
Sbjct: 182 GRLKEADRLTNTSAQGHAELIAVMEDVADITYSQDIVSIVINSTVTCIPTNPLSRFNKLN 241

Query: 205 MKIGVMFGSPETTTGGNALKFYSSV--RLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +K  +      TT     ++    V   LD      IK      G +  V+VV+++++  
Sbjct: 242 IKPALGSSFTYTTDATLLVQETGKVFGMLDEEERERIKK---APGLRGSVEVVRSRVSRT 298

Query: 263 FKQVEFDIM 271
                F+  
Sbjct: 299 GGWAVFETH 307


>gi|118577121|ref|YP_876864.1| RecA/RadA recombinase related protein [Cenarchaeum symbiosum A]
 gi|118195642|gb|ABK78560.1| RecA/RadA recombinase related protein [Cenarchaeum symbiosum A]
          Length = 218

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/196 (24%), Positives = 81/196 (41%), Gaps = 16/196 (8%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + SG  G+D  LG G    G I +I+GP +SGK+ +A    A +   GG   F D    L
Sbjct: 2   IRSGIRGIDGFLGGG-LRGGFITDIFGPPASGKSQIAFEICAGALAEGGRVIFHDTSGTL 60

Query: 108 DSIYA------RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
                      R LG +     +          +   +        ++V+D+   L    
Sbjct: 61  RPERILQILRSRGLGGEGLLDRMIVSRMTNTGEQAAGLSQIGPEASLVVVDNATELFS-F 119

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
           E  G    SLP  + RL+ Q +R+L+ +    +  ++  N +R   G      E     +
Sbjct: 120 EYAGR-ERSLP--RNRLLMQYMRRLSGAAVALRVPVIVTNTVRFIEG-----GEAENLAS 171

Query: 222 ALKFYSSVRLDIRRVG 237
           A++ +  VR+ +RR+G
Sbjct: 172 AMRPFPHVRIHLRRMG 187


>gi|291288793|ref|YP_003505609.1| DNA repair protein RadA [Denitrovibrio acetiphilus DSM 12809]
 gi|290885953|gb|ADD69653.1| DNA repair protein RadA [Denitrovibrio acetiphilus DSM 12809]
          Length = 445

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 53/145 (36%), Gaps = 5/145 (3%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
            ++AA + I +   K   + L     +    E   +G   LD  LG GG  KG ++ + G
Sbjct: 38  QVDAATTAIGKRIAKAKPVSLKDVKGL--ETERTPTGMPELDQVLG-GGLVKGSVLLVGG 94

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134
               GK+T+ L       +      +V  E +   +  R   + +    I    T    L
Sbjct: 95  EPGIGKSTIMLQCAGILSRDRLKVLYVSGEESAAQLRLRSDRLGVSENEIDILSTNS--L 152

Query: 135 EITDMLVRSGAVDIIVIDSVAALTP 159
           E           D I++DS+  +  
Sbjct: 153 EDVLQACEEEKPDYIILDSIQTIAS 177


>gi|149277321|ref|ZP_01883463.1| predicted repair protein [Pedobacter sp. BAL39]
 gi|149232198|gb|EDM37575.1| predicted repair protein [Pedobacter sp. BAL39]
          Length = 458

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 56/161 (34%), Gaps = 11/161 (6%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E V +G L LD  LG GG   G +  I G    GK+TL L         G    ++  E 
Sbjct: 72  ERVPTGDLELDRVLG-GGLVPGSVTLIGGEPGIGKSTLMLQLALNI--VGKKVLYISGEE 128

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +   I  R   +  +        T      I    V     +I+++DS+  L        
Sbjct: 129 SEQQIKMRAERITDQPKASCYILTETSTQNI-FKQVELLEPEILIVDSIQTLHS------ 181

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
              ES PG  ++ + +   +L      +   +  I  +   
Sbjct: 182 AHIESTPGSVSQ-VRECTAELLKFAKETDTPVFLIGHITKD 221


>gi|15920796|ref|NP_376465.1| hypothetical protein ST0579 [Sulfolobus tokodaii str. 7]
 gi|15621580|dbj|BAB65574.1| 258aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 258

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 49/262 (18%), Positives = 95/262 (36%), Gaps = 30/262 (11%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+G    D  +  GG P+G  V + G   +GKT  +LH IA+  + G  C +V  E +
Sbjct: 3   RLSTGIPEFDKLI-EGGIPQGFFVAVTGEPGTGKTIFSLHFIAEGLREGDNCIYVTTEES 61

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
            DSI  +      K       +  E+ L I D L++    +  + +  A      E+   
Sbjct: 62  RDSIVRQA-----KQFNWDFEEYMEKKLIIIDALMKEKEDEWSLTELNA-----EELVNK 111

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL--- 223
           + E+   +        +  +++       +   I+    ++   +      T   A+   
Sbjct: 112 VIEAKQKLGTGRARLVIDSVSALFLDKPAMARKISYYLKRVLNKWKFTIYATSQYAITTS 171

Query: 224 -------KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276
                  +  +   +  RR   IKD      ++  +     +        E DI  G+GI
Sbjct: 172 QAFGFGVEHVADGIIRFRRA--IKDG---MLHRYVLIEKMRQTNHDKYVWEIDIKPGKGI 226

Query: 277 SFFGEL----IDLGVKASIVDK 294
              G++     D  +   ++ K
Sbjct: 227 VLLGKINERREDYALPPKVMQK 248


>gi|1881700|gb|AAB49466.1| RadA [Pseudomonas aeruginosa]
          Length = 453

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 53/144 (36%), Gaps = 4/144 (2%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E +   ++GS  LD  LG GG   G +V I G    GK+T+ L T+           +V
Sbjct: 65  VEEMPRFTTGSTELDRVLG-GGLVDGSVVLIGGDPGIGKSTILLQTLCNLASR-VPALYV 122

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
             E +   +  R     L           E ++E      R     ++VIDS+  +    
Sbjct: 123 TGEESQQQVAMRA--RRLSLPKDKLKVMTETSIETIIATARQEQPRVMVIDSIQTIFTEQ 180

Query: 162 EIEGDMGESLPGMQARLMSQALRK 185
                 G +     A ++ +  ++
Sbjct: 181 LQSAPGGVAQVRESAAMLVRYAKQ 204


>gi|306821580|ref|ZP_07455178.1| DNA repair protein RadA [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550325|gb|EFM38318.1| DNA repair protein RadA [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 503

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 59/305 (19%), Positives = 109/305 (35%), Gaps = 51/305 (16%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEV-------VSSGSLG 54
           D   E    +K+K ++    QI+       +M  G         EV        S+G   
Sbjct: 70  DSFHEEVYTEKTKKVQ---KQIE-------LMTGGENTDPVRLCEVTGGDYTRFSTGIAE 119

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114
            D  LG GG   G +V I G    GK+T+ L       K+     +V AE +L+ I  R 
Sbjct: 120 FDRVLG-GGIVNGSLVLIGGDPGIGKSTILLQLTNNICKS-KKVLYVSAEESLEQIKLRA 177

Query: 115 ---LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
                 D   L+++     +  LE+ +  +   + D+++IDS+  ++  +        + 
Sbjct: 178 DRIFSKDSDILIMA-----QTNLEVIESKLSDQSFDVVIIDSIQTVSTASSDSLPGSVTQ 232

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
               A  + +        I +S+ I  FI     K G +        G   L+      L
Sbjct: 233 VKDIANRLMK--------ICKSRNICCFIVGHVTKDGAI-------AGPRVLEHLVDTVL 277

Query: 232 DIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASI 291
                    + +     +  ++ VKN+  S  +   F++    G+        + +  + 
Sbjct: 278 YF-------EGEKFNSYRM-IRAVKNRFGSTNELGVFEMT-DRGLIEVDNPSKMLLSENT 328

Query: 292 VDKSG 296
            + SG
Sbjct: 329 NENSG 333


>gi|322421914|ref|YP_004201137.1| DNA repair protein RadA [Geobacter sp. M18]
 gi|320128301|gb|ADW15861.1| DNA repair protein RadA [Geobacter sp. M18]
          Length = 453

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 75/206 (36%), Gaps = 15/206 (7%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG      E     SSGS   D  LG G  P G ++ I G   +GK+T+ L T+  +  +
Sbjct: 62  LGDVQCTEEA--RFSSGSEEFDRVLGGGFVP-GSVILIGGDPGAGKSTILLQTMCHAAAS 118

Query: 95  GGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
                +V  E +L  I   AR+L + L  + +    + E+ LE  +    S   +++VID
Sbjct: 119 -KEVLYVSGEESLQQIAGRARRLQLPLDRVKMLAESSVERVLEAAE----SERPEVVVID 173

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           S+  +          G S     A   +      TS +       V  +Q       +  
Sbjct: 174 SIQVMQSAGVDAAPGGVSQVRESAAAFT--CFAKTSGVVLIMVGHVTKDQSLAGPMTLSH 231

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGS 238
             +T      L      R  + R   
Sbjct: 232 MVDT---QVMLSSTDDARYRLMRTTK 254


>gi|253988002|ref|YP_003039358.1| DNA repair protein RadA [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779452|emb|CAQ82613.1| dna repair protein rada [Photorhabdus asymbiotica]
          Length = 460

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 10/154 (6%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ Q         +V
Sbjct: 70  LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTMCQLSVQ-MKTLYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+ + NL +    + EQ   I +         ++VIDS+  +  
Sbjct: 128 TGEESLQQVAMRAYRLGLPVDNLNMLSETSIEQICLIAE----QEQPKLMVIDSIQVMH- 182

Query: 160 RAEIEGDMGE-SLPGMQARLMSQALRKLTSSISR 192
            A+I+   G  +     A  +++  +  + +I  
Sbjct: 183 MADIQSSPGSVAQVRETAAYLTRFAKTRSIAIIM 216


>gi|195349890|ref|XP_002041475.1| GM10376 [Drosophila sechellia]
 gi|194123170|gb|EDW45213.1| GM10376 [Drosophila sechellia]
          Length = 270

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 66/220 (30%), Gaps = 39/220 (17%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           + +G+  LD   G GG   G +VE+ G   +GKT + L      Q         G+  F+
Sbjct: 46  ILTGNKALDTHFG-GGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFI 104

Query: 102 DAEHALDSIYARKLGVDLKN-----------------LLISQPDTGEQALEITDML---- 140
           D            L + ++                  +   +    +Q +          
Sbjct: 105 DTRQDFHPDRLMGLALKVERQYAQRVPEFKAHKMLHKIHYVRCPKLDQLMATVLSCHRHL 164

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS-QALRKLTSSISRSKCILVF 199
           V    + +IVIDS+A      E      E L  +   +   Q   +L           VF
Sbjct: 165 VDHPDIKLIVIDSLAFTLRMLEDGAHRYELLLELHESMRRLQRQHELAW---------VF 215

Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
            N +  +        E   G +      + R+       +
Sbjct: 216 TNVLTHRYVKQKFQVEPALG-DLHSHLINERIWFTGSSEL 254


>gi|330831145|ref|YP_004394097.1| DNA repair protein radA [Aeromonas veronii B565]
 gi|328806281|gb|AEB51480.1| DNA repair protein radA [Aeromonas veronii B565]
          Length = 455

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 58/144 (40%), Gaps = 8/144 (5%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I   +SG   LD  LG GG   G  + I G   +GK+TL L T+    +      +V  
Sbjct: 71  EIPRFTSGFKELDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTMCGLAER-MKTLYVTG 128

Query: 104 EHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           E +L  +  R  +LG+    L +    + EQ   I     +     I+VIDS+  +    
Sbjct: 129 EESLQQVAMRANRLGLPTDKLRMLSETSVEQICLIA----QQEQPQIMVIDSIQVMHVAD 184

Query: 162 EIEGDMGESLPGMQARLMSQALRK 185
                   S     A L+++  ++
Sbjct: 185 VQSSPGSVSQVREAAALLTRYAKQ 208


>gi|296392877|ref|YP_003657761.1| ATPase AAA [Segniliparus rotundus DSM 44985]
 gi|296180024|gb|ADG96930.1| AAA ATPase [Segniliparus rotundus DSM 44985]
          Length = 471

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 52/152 (34%), Gaps = 3/152 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +G    D  LG  G   G +V + G    GK+TL L T  Q    G  C +V  E +  
Sbjct: 65  PTGVREFDRVLGK-GLVAGSVVLLAGEPGVGKSTLLLETAKQWALAGRRCLYVSGEES-- 121

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
              AR     +  +      T E  LE           +++V+DSV  L    E  G + 
Sbjct: 122 PAQARARAERIGAVHEKVLFTAETQLEAILASCVEHTPELVVVDSVQMLRCAGEAPGAIS 181

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +    ++          ++  +         I
Sbjct: 182 QIQEAVRRFSALAKALDISVVLIGHVTKEGEI 213


>gi|159042547|ref|YP_001541799.1| putative circadian clock protein, KaiC [Caldivirga maquilingensis
           IC-167]
 gi|157921382|gb|ABW02809.1| putative circadian clock protein, KaiC [Caldivirga maquilingensis
           IC-167]
          Length = 295

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 67/178 (37%), Gaps = 16/178 (8%)

Query: 23  IQRVY-GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           +++   GKG + +        E +E  + G   LD AL  GG P+G    + G    GK+
Sbjct: 11  MEKRTEGKGEVRR-------SEDVEREAFGIDALDDAL-EGGLPRGTWTVVTGEPGVGKS 62

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
            L +H      +      +V  E +   +  +    ++  L   +P      L      V
Sbjct: 63  ILCMHFAYTGLEDDEPVIYVTTETSFRDVVRQARQFNMD-LTQFKPVNLSDVL---SGRV 118

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
           +     ++VID         E+  + GE     +    + ++  L  ++ ++  +L F
Sbjct: 119 KPENAKLVVIDLFGLYRQYREMVKEAGE---EGRRPSRALSIEVLEGAVRKAYEVLGF 173


>gi|15599805|ref|NP_253299.1| DNA repair protein RadA [Pseudomonas aeruginosa PAO1]
 gi|107099727|ref|ZP_01363645.1| hypothetical protein PaerPA_01000745 [Pseudomonas aeruginosa PACS2]
 gi|116052751|ref|YP_793068.1| DNA repair protein RadA [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218893706|ref|YP_002442575.1| DNA repair protein RadA [Pseudomonas aeruginosa LESB58]
 gi|254238649|ref|ZP_04931972.1| DNA repair protein RadA [Pseudomonas aeruginosa C3719]
 gi|254244498|ref|ZP_04937820.1| DNA repair protein RadA [Pseudomonas aeruginosa 2192]
 gi|296391424|ref|ZP_06880899.1| DNA repair protein RadA [Pseudomonas aeruginosa PAb1]
 gi|313107262|ref|ZP_07793458.1| DNA repair protein RadA [Pseudomonas aeruginosa 39016]
 gi|12230966|sp|P96963|RADA_PSEAE RecName: Full=DNA repair protein RadA homolog; AltName: Full=DNA
           repair protein Sms homolog
 gi|9950860|gb|AAG07997.1|AE004875_3 DNA repair protein RadA [Pseudomonas aeruginosa PAO1]
 gi|115587972|gb|ABJ13987.1| DNA repair protein RadA [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126170580|gb|EAZ56091.1| DNA repair protein RadA [Pseudomonas aeruginosa C3719]
 gi|126197876|gb|EAZ61939.1| DNA repair protein RadA [Pseudomonas aeruginosa 2192]
 gi|218773934|emb|CAW29748.1| DNA repair protein RadA [Pseudomonas aeruginosa LESB58]
 gi|310879960|gb|EFQ38554.1| DNA repair protein RadA [Pseudomonas aeruginosa 39016]
          Length = 453

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 53/144 (36%), Gaps = 4/144 (2%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E +   ++GS  LD  LG GG   G +V I G    GK+T+ L T+           +V
Sbjct: 65  VEEMPRFTTGSTELDRVLG-GGLVDGSVVLIGGDPGIGKSTILLQTLCNLASR-VPALYV 122

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
             E +   +  R     L           E ++E      R     ++VIDS+  +    
Sbjct: 123 TGEESQQQVAMRA--RRLSLPEDKLKVMTETSIETIIATARQEQPRVMVIDSIQTIFTEQ 180

Query: 162 EIEGDMGESLPGMQARLMSQALRK 185
                 G +     A ++ +  ++
Sbjct: 181 LQSAPGGVAQVRESAAMLVRYAKQ 204


>gi|317177277|dbj|BAJ55066.1| hypothetical protein HPF16_0469 [Helicobacter pylori F16]
          Length = 390

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 71/199 (35%), Gaps = 19/199 (9%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99
                IE +S+G   LD ++  GG   G+IV + G   +GKT L +  +  +Q+      
Sbjct: 141 KNKPPIEKISTGIDFLD-SITEGGIELGQIVLLSGDPEAGKTLLGVQFLMNAQQQHKVTY 199

Query: 100 F---VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
           F         ++++ ++   +  +N  I         L      +      + +IDS   
Sbjct: 200 FRFEFSVRKHIETLKSKNFDIKAENYFIDDQSCELNDLISQIRSLAKEGHKVFLIDS--Q 257

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPET 216
           +  +A I G   E +   +   +S+  R L   I       +FI Q             T
Sbjct: 258 MKIQAPIVGRTIEEIETTKFNALSETARSLQVLI-------IFIVQNSK------SDSYT 304

Query: 217 TTGGNALKFYSSVRLDIRR 235
             G       + + + I R
Sbjct: 305 PIGSRKGGHEAHIMIRIER 323


>gi|109084988|ref|XP_001083970.1| PREDICTED: DNA repair protein XRCC3 isoform 2 [Macaca mulatta]
          Length = 346

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 38/109 (34%), Gaps = 7/109 (6%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---GGT---CA 99
           + +S G   LD  L  GG P   I E+ G  S GKT LAL      Q     GG      
Sbjct: 80  QRLSLGCPVLDSLL-RGGLPLDGITELAGRSSVGKTQLALQLCLAVQFPRQHGGLEAGAI 138

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           ++  E A      ++L      L    P    Q L     +      D+
Sbjct: 139 YICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEHVADV 187


>gi|45201233|ref|NP_986803.1| AGR137Wp [Ashbya gossypii ATCC 10895]
 gi|44986087|gb|AAS54627.1| AGR137Wp [Ashbya gossypii ATCC 10895]
          Length = 503

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 63/178 (35%), Gaps = 8/178 (4%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + EG E +++G   LD ALG G  P+  I E++GP   GKT   L  I      G     
Sbjct: 11  LQEGAEPLTTGIPQLDDALGAGLDPRS-IYEVFGPPGIGKTLFGLQVIRC--NRGKRVLV 67

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS-----VA 155
           VD                  ++        + A  +        A D+I+I+      + 
Sbjct: 68  VDTHKRTPLDRLLPTEPSADDIEPHVVRLTKFAQLVYFFQELRTAYDLIIIEGLSQVLID 127

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
            L  R         +L G++ R +   L  LT  +++    ++ +N         +  
Sbjct: 128 YLHGRMRHPMPSDTTLHGVKTRQLIALLSLLTRYVTQHHSCVLLLNDAMNTAYQDYSD 185


>gi|227872596|ref|ZP_03990932.1| DNA repair protein RadA [Oribacterium sinus F0268]
 gi|227841597|gb|EEJ51891.1| DNA repair protein RadA [Oribacterium sinus F0268]
          Length = 457

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 63/167 (37%), Gaps = 14/167 (8%)

Query: 28  GKGAIMQLG-SQGSIFEGI-----EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           G G+++ L  ++    E I     + +S+G   LD  LG GG   G +V + G    GK+
Sbjct: 46  GAGSMLPLKKAEAKKLEEIPLDKEDRISTGYGELDRVLG-GGLVAGSLVLLGGDPGIGKS 104

Query: 82  TLALHTIAQSQKTGGT-CAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITD 138
           T+ L         GG    +V  E +L  I   A ++G     L         Q LE+  
Sbjct: 105 TIFLSVSLHLASKGGKRVLYVSGEESLKQIKLRANRMGEVEGELYFLSESNLNQLLEV-- 162

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
             V    +D +VIDS+  +            S        + +  + 
Sbjct: 163 --VEEREIDFLVIDSIQTMFLEEVTASPGSVSQVRECTSFLLRLAKD 207


>gi|213406265|ref|XP_002173904.1| recombinational DNA repair protein Rhp55p [Schizosaccharomyces
           japonicus yFS275]
 gi|212001951|gb|EEB07611.1| recombinational DNA repair protein Rhp55p [Schizosaccharomyces
           japonicus yFS275]
          Length = 366

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 1/119 (0%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
            S  S  LD A G  G  +G+I EI GP  SGKTTLAL+  A +   G    +++    +
Sbjct: 26  FSFNSNNLDNAFGGTGLKRGQISEICGPSGSGKTTLALNVAASALSAGYKVIWIETCQRI 85

Query: 108 DSIYAR-KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
                +  L   +++    + +  E  L + +++       ++V      L  + E E 
Sbjct: 86  PLERLKYMLSCQVQSSQAEEVEPTEDVLSLLEIVHVPHLAQLVVFIQQMNLQKKIEDEN 144


>gi|322379444|ref|ZP_08053814.1| DNA repair protein RadA [Helicobacter suis HS1]
 gi|322380945|ref|ZP_08055011.1| DNA repair protein RadA [Helicobacter suis HS5]
 gi|321146617|gb|EFX41451.1| DNA repair protein RadA [Helicobacter suis HS5]
 gi|321148153|gb|EFX42683.1| DNA repair protein RadA [Helicobacter suis HS1]
          Length = 443

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 65/178 (36%), Gaps = 7/178 (3%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           +E +  +I+    K   M +       E I   SS  L LDI LG GG   G +  I G 
Sbjct: 34  VEHSTEKIKSSSSKDVSMPVSIASIEHERISAFSSTQLELDIVLG-GGIVPGGLYLIGGS 92

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQA 133
              GK+TL L       K G +  +V  E +   I   A +L    + L +         
Sbjct: 93  PGVGKSTLLLKVAGGLAKEGYSVLYVSGEESAGQIRLRAERLQCVQEKLYLLNEIN---- 148

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           L++    + +    I VIDS+  L   A        S        + +  ++   +I 
Sbjct: 149 LDVIKTSLCAKNYAICVIDSIQTLYSNAISAAPGSISQVREITFELMRLAKQEQIAIF 206


>gi|254473428|ref|ZP_05086825.1| DNA repair protein RadA [Pseudovibrio sp. JE062]
 gi|211957544|gb|EEA92747.1| DNA repair protein RadA [Pseudovibrio sp. JE062]
          Length = 467

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 71/180 (39%), Gaps = 10/180 (5%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG ++ L       +    + +G   LD   G GGF KG  + + G    GK+TL     
Sbjct: 53  KGRVVPLVGLSGETKEAPRIITGVAELDRVTG-GGFVKGSALLVGGDPGIGKSTLLTQAS 111

Query: 89  AQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           A     G    ++  E A+D +   A +LG+    + ++   + E  L   +        
Sbjct: 112 AHLAFQGHNIVYISGEEAVDQVRLRAERLGLRDAPVQLAAETSVEDILTTLEDKKGDERP 171

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            +++IDS+  L         M +S PG   ++ + + + L     ++   +V +  +   
Sbjct: 172 HLVIIDSIQTLWTE------MADSPPGTVTQVRA-SAQALVRFAKKTGTTVVIVGHVTKD 224


>gi|209944614|gb|ACI96538.1| spindle D [Drosophila melanogaster]
          Length = 212

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 8/117 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           + +G+  LD   G GG   G +VE+ G   +GKT + L      Q         G+  F+
Sbjct: 46  ILTGNKALDTHFG-GGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFI 104

Query: 102 DAEHALDSIYARKLGVDLK-NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           D            L + L+       P+     +      VR   +D ++   ++  
Sbjct: 105 DTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKMLQKIHYVRCPKLDQLMATVLSCH 161


>gi|209944612|gb|ACI96537.1| spindle D [Drosophila melanogaster]
          Length = 212

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 8/117 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           + +G+  LD   G GG   G +VE+ G   +GKT + L      Q         G+  F+
Sbjct: 46  ILTGNKALDTHFG-GGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFI 104

Query: 102 DAEHALDSIYARKLGVDLK-NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           D            L + L+       P+     +      VR   +D ++   ++  
Sbjct: 105 DTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKMLQKIHYVRCPKLDQLMATVLSCH 161


>gi|209944610|gb|ACI96536.1| spindle D [Drosophila melanogaster]
          Length = 212

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 8/117 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           + +G+  LD   G GG   G +VE+ G   +GKT + L      Q         G+  F+
Sbjct: 46  ILTGNKALDTHFG-GGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFI 104

Query: 102 DAEHALDSIYARKLGVDLK-NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           D            L + L+       P+     +      VR   +D ++   ++  
Sbjct: 105 DTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKMLQKIHYVRCPKLDQLMATVLSCH 161


>gi|209944606|gb|ACI96534.1| spindle D [Drosophila melanogaster]
          Length = 212

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 8/117 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           + +G+  LD   G GG   G +VE+ G   +GKT + L      Q         G+  F+
Sbjct: 46  ILTGNKALDTHFG-GGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFI 104

Query: 102 DAEHALDSIYARKLGVDLK-NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           D            L + L+       P+     +      VR   +D ++   ++  
Sbjct: 105 DTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKMLQKIHYVRCPKLDQLMATVLSCH 161


>gi|209944600|gb|ACI96531.1| spindle D [Drosophila melanogaster]
          Length = 212

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 8/117 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           + +G+  LD   G GG   G +VE+ G   +GKT + L      Q         G+  F+
Sbjct: 46  ILTGNKALDTHFG-GGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFI 104

Query: 102 DAEHALDSIYARKLGVDLK-NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           D            L + L+       P+     +      VR   +D ++   ++  
Sbjct: 105 DTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKMLQKIHYVRCPKLDQLMATVLSCH 161


>gi|209944590|gb|ACI96526.1| spindle D [Drosophila melanogaster]
          Length = 212

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 8/117 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           + +G+  LD   G GG   G +VE+ G   +GKT + L      Q         G+  F+
Sbjct: 46  ILTGNKALDTHFG-GGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFI 104

Query: 102 DAEHALDSIYARKLGVDLK-NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           D            L + L+       P+     +      VR   +D ++   ++  
Sbjct: 105 DTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKMLQKIHYVRCPKLDQLMATVLSCH 161


>gi|209944582|gb|ACI96522.1| spindle D [Drosophila melanogaster]
          Length = 212

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 8/117 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           + +G+  LD   G GG   G +VE+ G   +GKT + L      Q         G+  F+
Sbjct: 46  ILTGNKALDTHFG-GGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFI 104

Query: 102 DAEHALDSIYARKLGVDLK-NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           D            L + L+       P+     +      VR   +D ++   ++  
Sbjct: 105 DTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKMLQKIHYVRCPKLDQLMATVLSCH 161


>gi|209944580|gb|ACI96521.1| spindle D [Drosophila melanogaster]
          Length = 212

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 8/117 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           + +G+  LD   G GG   G +VE+ G   +GKT + L      Q         G+  F+
Sbjct: 46  ILTGNKALDTHFG-GGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFI 104

Query: 102 DAEHALDSIYARKLGVDLK-NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           D            L + L+       P+     +      VR   +D ++   ++  
Sbjct: 105 DTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKMLQKIHYVRCPKLDQLMATVLSCH 161


>gi|209944578|gb|ACI96520.1| spindle D [Drosophila melanogaster]
          Length = 212

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 8/117 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           + +G+  LD   G GG   G +VE+ G   +GKT + L      Q         G+  F+
Sbjct: 46  ILTGNKALDTHFG-GGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFI 104

Query: 102 DAEHALDSIYARKLGVDLK-NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           D            L + L+       P+     +      VR   +D ++   ++  
Sbjct: 105 DTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKMLQKIHYVRCPKLDQLMATVLSCH 161


>gi|209944576|gb|ACI96519.1| spindle D [Drosophila melanogaster]
 gi|209944602|gb|ACI96532.1| spindle D [Drosophila melanogaster]
          Length = 212

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 8/117 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           + +G+  LD   G GG   G +VE+ G   +GKT + L      Q         G+  F+
Sbjct: 46  ILTGNKALDTHFG-GGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFI 104

Query: 102 DAEHALDSIYARKLGVDLK-NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           D            L + L+       P+     +      VR   +D ++   ++  
Sbjct: 105 DTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKMLQKIHYVRCPKLDQLMATVLSCH 161


>gi|209944572|gb|ACI96517.1| spindle D [Drosophila melanogaster]
 gi|209944584|gb|ACI96523.1| spindle D [Drosophila melanogaster]
          Length = 212

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 8/117 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           + +G+  LD   G GG   G +VE+ G   +GKT + L      Q         G+  F+
Sbjct: 46  ILTGNKALDTHFG-GGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFI 104

Query: 102 DAEHALDSIYARKLGVDLK-NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           D            L + L+       P+     +      VR   +D ++   ++  
Sbjct: 105 DTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKMLQKIHYVRCPKLDQLMATVLSCH 161


>gi|209944556|gb|ACI96509.1| spindle D [Drosophila simulans]
          Length = 212

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 8/117 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           + +G+  LD   G GG   G +VE+ G   +GKT + L      Q         G+  F+
Sbjct: 46  ILTGNKALDTHFG-GGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFI 104

Query: 102 DAEHALDSIYARKLGVDLK-NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           D            L + L+       P+     +      VR   +D ++   ++  
Sbjct: 105 DTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKMLQKIHYVRCPKLDQLMATVLSCH 161


>gi|197303863|ref|ZP_03168898.1| hypothetical protein RUMLAC_02601 [Ruminococcus lactaris ATCC
           29176]
 gi|197297046|gb|EDY31611.1| hypothetical protein RUMLAC_02601 [Ruminococcus lactaris ATCC
           29176]
          Length = 454

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 61/185 (32%), Gaps = 21/185 (11%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE-HALD 108
           +G   LD  LG GG   G +V + G    GK+TL L    +  +          E  A  
Sbjct: 75  TGIKELDRVLG-GGIVPGSLVLVGGDPGIGKSTLLLQVCQRMAQMKKILYISGEESQAQI 133

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            + A ++G     LL+         L I   ++     +++VIDS+  +           
Sbjct: 134 KLRANRMGNFTSGLLLLCETN----LGIIRSVIEKERPELVVIDSIQTMYSEDVTSAPGS 189

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
            S       +  Q  + L        CI +FI     K G +        G   L+    
Sbjct: 190 VSQVRESTNVFMQLAKGL--------CIPIFIVGHVTKEGTV-------AGPRVLEHMVD 234

Query: 229 VRLDI 233
             L  
Sbjct: 235 TVLYF 239


>gi|195574316|ref|XP_002105135.1| GD21329 [Drosophila simulans]
 gi|194201062|gb|EDX14638.1| GD21329 [Drosophila simulans]
          Length = 267

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 8/117 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           + +G+  LD   G GG   G +VE+ G   +GKT + L      Q         G+  F+
Sbjct: 46  ILTGNKALDTHFG-GGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFI 104

Query: 102 DAEHALDSIYARKLGVDLK-NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           D            L + L+       P+     +      VR   +D ++   ++  
Sbjct: 105 DTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKMLQKIHYVRCPKLDQLMATVLSCH 161


>gi|292654798|ref|YP_003534695.1| KaiC-type circadian regulator Circ3 [Haloferax volcanii DS2]
 gi|291370532|gb|ADE02759.1| KaiC-type circadian regulator Circ3 [Haloferax volcanii DS2]
          Length = 484

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 76/229 (33%), Gaps = 19/229 (8%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +SSG   LD  LG GG  +G I  + GP   GK+T        + + G   A    E
Sbjct: 242 IEPLSSGIDDLDALLG-GGIERGSITLVSGPSGVGKSTTGAAFARATAERGERAAVYLFE 300

Query: 105 HA--LDSIYARKLGVDLKNLLIS--QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
            +       +  +G+ + +L+ S        + L ++           +  +    +   
Sbjct: 301 ESKRSFRHRSESVGIPIDDLVDSGNLRVDAVEPLSLSTDEFAQRVRAEVEANDTKFVL-- 358

Query: 161 AEIEGDMGESL-PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
             I+G  G  L    +   + + L  L   +      +V   +++   G    S      
Sbjct: 359 --IDGTAGYQLSLTDERSDIRRELHALARYLKNMGVTVVLTEEVQQVTGAFHASD----- 411

Query: 220 GNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
            N + + +   L IR +    +     G    +K          +  E 
Sbjct: 412 -NHVSYLADNILFIRYIEVRGEIRKAVG---VLKKRFGGFEPTLRSFEI 456



 Score = 40.6 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 55/329 (16%), Positives = 103/329 (31%), Gaps = 42/329 (12%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
             +S+G  GLD  L  GG    R   + G   +GK     H +   ++      F+  E 
Sbjct: 6   PRLSTGVSGLDAVL-DGGLVPNRTYMVRGESGAGKAIAGYHFLTAGRENDEDVLFISFEE 64

Query: 106 ALDSIYARK--LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           +   + A    LG DL  + +       +A    +        ++    +   L  +  I
Sbjct: 65  SNADLRANAGTLGFDLSEVPVLDLSPSPEAFLDDEAYTMLSPSEVEGKSTTTEL--KEVI 122

Query: 164 EGDMGESLPGMQARLMSQALRK----------LTSSISRSKCILVFINQMRMKIGVMFGS 213
           E    + +       + +              L S + RS    +F +Q          +
Sbjct: 123 EEHHPDRVVIDPLSQLGRLSSDEYQFRRLVSSLLSYLKRSGATTLFTSQPSSGGTDETLA 182

Query: 214 P--ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ-TRVKVVKNKMASPFKQVEFDI 270
              + +   +   +  SVR++  R    +               V  ++       EF I
Sbjct: 183 YLCDGSISLSRSDWGRSVRIEKFRGSDSQTGPHAMRIDGGHGMRVFPRLVPDSHHHEFTI 242

Query: 271 -MYGEGISFFGELIDLGVKASIVD---------KS--GAWFSFKGQRLGQGRENSKIFLR 318
                GI     L+  G++   +          KS  GA F+      G   E + ++L 
Sbjct: 243 EPLSSGIDDLDALLGGGIERGSITLVSGPSGVGKSTTGAAFARATAERG---ERAAVYL- 298

Query: 319 ENIEIAENIESLLR---QNAGLVADSLLQ 344
                 E  +   R   ++ G+  D L+ 
Sbjct: 299 -----FEESKRSFRHRSESVGIPIDDLVD 322


>gi|209944570|gb|ACI96516.1| spindle D [Drosophila melanogaster]
          Length = 212

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 8/117 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           + +G+  LD   G GG   G +VE+ G   +GKT + L      Q         G+  F+
Sbjct: 46  ILTGNKALDTHFG-GGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFI 104

Query: 102 DAEHALDSIYARKLGVDLK-NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           D            L + L+       P+     +      VR   +D ++   ++  
Sbjct: 105 DTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKMLQKVHYVRCPKLDQLMATVLSCH 161


>gi|145350889|ref|XP_001419827.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580059|gb|ABO98120.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 351

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 85/259 (32%), Gaps = 53/259 (20%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL------HTIAQSQK 93
                 + V      +D ALG GG   G + E+ G   +GKT L L         A+   
Sbjct: 72  DALRRSQYVPLVIEDVDKALG-GGLRVGAVTEVVGAAGAGKTQLCLAACASAAAPARVGG 130

Query: 94  TGGTCAFVDAEHAL------------------DSIYARKLGVDLKNLLISQPDTGEQALE 135
             G   +VDAE                     D      L   +  +  +      + L+
Sbjct: 131 RDGGVIYVDAERKFSGARLAEIAREKFPGAFEDEESVHALARRVHVVTPTSLTDLNKRLD 190

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
             +  +    V +++IDS+A L  RAE     G      +   +      L     +   
Sbjct: 191 ALEEAIIDHKVRLVIIDSIAHLA-RAEF----GREKVVQRQSALGAVASTLKRHAEKHAL 245

Query: 196 ILVFINQMRMKIGVM--------FGSPETTTG-----GNALKFYSSVRLDIRRVGSIKDK 242
            ++ +NQ+  KIG              + ++G     G       + R+ +         
Sbjct: 246 AVLAVNQVTTKIGTFARHASDGGDDVADESSGITAALGTKWAHCVNTRIAL--------- 296

Query: 243 DSITGNQTRVKVVKNKMAS 261
             +  ++  +K+VK+ +A 
Sbjct: 297 -EVLEDRRALKIVKSPLAP 314


>gi|91772886|ref|YP_565578.1| KaiC [Methanococcoides burtonii DSM 6242]
 gi|91711901|gb|ABE51828.1| KaiC domain-containing protein [Methanococcoides burtonii DSM 6242]
          Length = 239

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+G   LD  L  GG+PKG+ + I G   SGKT   LH + Q    G  C  V  E
Sbjct: 1   MERISTGIKYLDDKL-DGGYPKGKGILITGVPGSGKTIFGLHALDQGCIDGKKCVMVATE 59

Query: 105 HALDSIYARK--LGVDLKNLLIS 125
            + + I  +   LG+DLK+ + +
Sbjct: 60  ESPEDILVQAEMLGLDLKSHMDN 82


>gi|170719980|ref|YP_001747668.1| DNA repair protein RadA [Pseudomonas putida W619]
 gi|169757983|gb|ACA71299.1| DNA repair protein RadA [Pseudomonas putida W619]
          Length = 477

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 58/146 (39%), Gaps = 8/146 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I   ++ S  LD  LG GG   G +V I G    GK+T+ L T+      G    +V
Sbjct: 89  VEEIPRFTTSSTELDRVLG-GGLVDGSVVLIGGDPGIGKSTILLQTLCNIAV-GMPALYV 146

Query: 102 DAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +   +   +R+LG+    L +      E  +E      R     ++VIDS+  +  
Sbjct: 147 TGEESQQQVAMRSRRLGLPQDQLKVMT----ETCIETIIATARQEKPRVMVIDSIQTIFT 202

Query: 160 RAEIEGDMGESLPGMQARLMSQALRK 185
                   G +     A L+ +  ++
Sbjct: 203 EQLQSAPGGVAQVRESAALLVRYAKQ 228


>gi|10944745|emb|CAC14091.1| RAD51C protein [Arabidopsis thaliana]
          Length = 363

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 68/226 (30%), Gaps = 45/226 (19%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGG 96
           E +  +++    LD  LG GG     + EI G    GKT + +      Q        GG
Sbjct: 100 ESLPRITTSCSDLDNILG-GGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPRECGGLGG 158

Query: 97  TCAFVDAEHALDSIYARKLG----------------------------VDLKNLLISQPD 128
              ++D E +     A ++                               L+N+   +  
Sbjct: 159 KAIYIDTEGSFMVKRALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIFYFRVC 218

Query: 129 TGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           +  + + +    +  +       +VI        R + +          + R++S+   K
Sbjct: 219 SYTEQIALVNHLEKFISENKDVKVVIVDSITFHFRQDYDD------LAQRTRVLSEMALK 272

Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
                 +    +V +NQ+  K            G +      + R+
Sbjct: 273 FMKLAKKFSLAVVLLNQVTTKFSEGSFQLALALGDS-WSHSCTNRV 317


>gi|304439881|ref|ZP_07399775.1| DNA repair protein RadA [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371620|gb|EFM25232.1| DNA repair protein RadA [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 449

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 88/261 (33%), Gaps = 19/261 (7%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + +G    D  +G GG  K  +  +     +GK+TL L         G    +   E 
Sbjct: 62  ERILTGVSEFDRVMG-GGILKDSLTILTARPGAGKSTLLLQVSNILASKGKKVLYASGEE 120

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +   I  ++    ++N+  +        L      V S   D +++DS+           
Sbjct: 121 SASQIR-QRAKRIVENISDNLFVISTNNLVDVLDEVESLDCDFVIVDSIQTFII------ 173

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
              ES  G   ++M      +  + + S+   VFI     K   + G        + +  
Sbjct: 174 PNIESRAGSPTQIMESIHMLMNMAKNESRPRAVFIVGQMTKEDSLAGVRSLEHAVDTVLL 233

Query: 226 YSSVRLDIRRV-GSIKDKDSITGNQTRVKVVKNKMAS---PFKQVEFDIMYGE------- 274
            S    +  R+  + K++   TG     K+ +  + S   P +    +   G        
Sbjct: 234 LSGETYEELRILSTTKNRYGSTGEMGFFKMDEKGLTSIDNPSEYFMTERDNGRNVPGSAL 293

Query: 275 GISFFGELIDLGVKASIVDKS 295
            ++  G    +    S+V KS
Sbjct: 294 SVTREGTRPIILEVESLVSKS 314


>gi|199598517|ref|ZP_03211934.1| DNA repair protein RadA [Lactobacillus rhamnosus HN001]
 gi|258540524|ref|YP_003175023.1| DNA repair protein RadA [Lactobacillus rhamnosus Lc 705]
 gi|199590559|gb|EDY98648.1| DNA repair protein RadA [Lactobacillus rhamnosus HN001]
 gi|257152200|emb|CAR91172.1| DNA repair protein RadA [Lactobacillus rhamnosus Lc 705]
          Length = 454

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 71/188 (37%), Gaps = 20/188 (10%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            V +G   L+  LG GG   G +V I G    GK+TL L    Q   TGGT  +V  E +
Sbjct: 69  RVKTGLAELNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSGQLASTGGTVLYVSGEES 127

Query: 107 LDSIYARKLGVDLKNL-LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
              I  R   + + N  +   P+T   ++E     +     D +VIDSV  +        
Sbjct: 128 ASQIKMRAGRLGVANSGMYLYPETDMPSIENV---IDQMQPDYVVIDSVQTM-------N 177

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
               +        + +   +L   I++SK + +FI     K G +        G   L+ 
Sbjct: 178 VPDMNSAVGSVAQIREVTAELMR-IAKSKGVTIFIVGHVTKEGAI-------AGPKILEH 229

Query: 226 YSSVRLDI 233
                L  
Sbjct: 230 MVDTVLYF 237


>gi|153941291|ref|YP_001392863.1| DNA repair protein RadA [Clostridium botulinum F str. Langeland]
 gi|152937187|gb|ABS42685.1| DNA repair protein RadA [Clostridium botulinum F str. Langeland]
 gi|295320841|gb|ADG01219.1| DNA repair protein RadA [Clostridium botulinum F str. 230613]
          Length = 452

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 62/165 (37%), Gaps = 13/165 (7%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + +G   L+  LG GG  KG +  I G    GK+T+ L          G   +V  E 
Sbjct: 66  ERLDTGINELNRVLG-GGIVKGSLTLISGSPGIGKSTILLQAANNIATKYGKILYVSGEE 124

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           + + I  R     LK +        E  ++I    + +     ++IDS+  L  ++E+  
Sbjct: 125 SEEQIKMRA--DRLKVISKDIYILSETNVDIIKEHITTINPKFVIIDSIQTLF-KSELSS 181

Query: 166 DMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
             G  S     +  +          IS+S  I  FI     K G 
Sbjct: 182 APGTVSQVRQCSNDIM--------LISKSNNIPFFIVAHVTKQGE 218


>gi|148381450|ref|YP_001255991.1| DNA repair protein radA [Clostridium botulinum A str. ATCC 3502]
 gi|153934023|ref|YP_001385825.1| DNA repair protein RadA [Clostridium botulinum A str. ATCC 19397]
 gi|153935484|ref|YP_001389232.1| DNA repair protein RadA [Clostridium botulinum A str. Hall]
 gi|168178802|ref|ZP_02613466.1| DNA repair protein radA [Clostridium botulinum NCTC 2916]
 gi|170757152|ref|YP_001783150.1| DNA repair protein RadA [Clostridium botulinum B1 str. Okra]
 gi|148290934|emb|CAL85070.1| DNA repair protein [Clostridium botulinum A str. ATCC 3502]
 gi|152930067|gb|ABS35567.1| DNA repair protein RadA [Clostridium botulinum A str. ATCC 19397]
 gi|152931398|gb|ABS36897.1| DNA repair protein RadA [Clostridium botulinum A str. Hall]
 gi|169122364|gb|ACA46200.1| DNA repair protein RadA [Clostridium botulinum B1 str. Okra]
 gi|182670181|gb|EDT82157.1| DNA repair protein radA [Clostridium botulinum NCTC 2916]
 gi|322807836|emb|CBZ05411.1| DNA repair protein RadA [Clostridium botulinum H04402 065]
          Length = 452

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 62/165 (37%), Gaps = 13/165 (7%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + +G   L+  LG GG  KG +  I G    GK+T+ L          G   +V  E 
Sbjct: 66  ERLDTGINELNRVLG-GGIVKGSLTLISGSPGIGKSTILLQAANNIATKYGKILYVSGEE 124

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           + + I  R     LK +        E  ++I    + +     ++IDS+  L  ++E+  
Sbjct: 125 SEEQIKMRA--DRLKVISKDIYILSETNVDIIKEHITTINPKFVIIDSIQTLF-KSELSS 181

Query: 166 DMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
             G  S     +  +          IS+S  I  FI     K G 
Sbjct: 182 APGTVSQVRQCSNDIM--------LISKSNNIPFFIVAHVTKQGE 218


>gi|300122053|emb|CBK22627.2| unnamed protein product [Blastocystis hominis]
          Length = 225

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 80/189 (42%), Gaps = 26/189 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT-----CAFVD 102
           +S+GS  +D  L +GGF  G + EI G  S+GKT L +   A  Q+         C  +D
Sbjct: 46  ISTGSSEIDNLL-LGGFKCGTVTEISGRGSTGKTQLVITACATVQRYNTPSHQFQCIVID 104

Query: 103 AEHALDSIYARKLGVDLK-------NLLISQPDTGEQALEITDM----LVRSGAVDIIVI 151
           AE+   +I  +++  +LK       N+ + +P +    +E+       L +   V  I I
Sbjct: 105 AENTYSAIRQQEVLTNLKNPNASLRNIFVWKPQSLTDLIELLKSLPIFLEQHPQVRFIAI 164

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DS+A    +         +    ++  +++A+  LT   +R +C  +  N++  K     
Sbjct: 165 DSIAYYFRQF--------TDMIERSSKLNEAISYLTKIANRMQC-AILPNRLFPKPKWFS 215

Query: 212 GSPETTTGG 220
                  G 
Sbjct: 216 LFSVLPGGT 224


>gi|294851827|ref|ZP_06792500.1| DNA repair protein RadA [Brucella sp. NVSL 07-0026]
 gi|294820416|gb|EFG37415.1| DNA repair protein RadA [Brucella sp. NVSL 07-0026]
          Length = 467

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 75/214 (35%), Gaps = 6/214 (2%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG  + L S     E    + SG   LD   G GGF +G  + I G    GK+TL     
Sbjct: 54  KGRAVALTSLSGEIEDAPRIISGISELDRVTG-GGFVRGSALLIGGDPGIGKSTLLTQAA 112

Query: 89  AQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALE-ITDMLVRSGA 145
           A     G    +V  E A+  I   A++LGV    + ++     E  +  I+     S  
Sbjct: 113 AALSNRGHRIVYVSGEEAVAQIHLRAQRLGVAASAVELAAETNVEDIIATISSDNSGSKR 172

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
            D+++IDS+  L            +     A+ M +   K T +       +    Q+  
Sbjct: 173 PDLVIIDSIQTLWTDMADSAPGTVTQVRSSAQAMIRYA-KQTGAAVVLVGHVTKDGQIAG 231

Query: 206 -KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
            ++            G     Y  +R    R G 
Sbjct: 232 PRVVEHMVDGVLYFEGEGGHHYRILRTVKNRFGP 265


>gi|256060582|ref|ZP_05450750.1| DNA repair protein RadA [Brucella neotomae 5K33]
 gi|261324578|ref|ZP_05963775.1| DNA repair protein RadA [Brucella neotomae 5K33]
 gi|261300558|gb|EEY04055.1| DNA repair protein RadA [Brucella neotomae 5K33]
          Length = 467

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 75/214 (35%), Gaps = 6/214 (2%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG  + L S     E    + SG   LD   G GGF +G  + I G    GK+TL     
Sbjct: 54  KGRAVALTSLSGEIEDAPRIISGISELDRVTG-GGFVRGSALLIGGDPGIGKSTLLTQAA 112

Query: 89  AQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALE-ITDMLVRSGA 145
           A     G    +V  E A+  I   A++LGV    + ++     E  +  I+     S  
Sbjct: 113 AALSNRGHRIVYVSGEEAVAQIRLRAQRLGVAASAVELAAETNVEDIIATISSDNSGSKR 172

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
            D+++IDS+  L            +     A+ M +   K T +       +    Q+  
Sbjct: 173 PDLVIIDSIQTLWTDMADSAPGTVTQVRSSAQAMIRYA-KQTGAAVVLVGHVTKDGQIAG 231

Query: 206 -KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
            ++            G     Y  +R    R G 
Sbjct: 232 PRVVEHMVDGVLYFEGEGGHHYRILRTVKNRFGP 265


>gi|17987769|ref|NP_540403.1| DNA repair protein RadA [Brucella melitensis bv. 1 str. 16M]
 gi|256044165|ref|ZP_05447072.1| DNA repair protein RadA [Brucella melitensis bv. 1 str. Rev.1]
 gi|260563523|ref|ZP_05834009.1| RadA family protein [Brucella melitensis bv. 1 str. 16M]
 gi|265990578|ref|ZP_06103135.1| DNA repair protein RadA [Brucella melitensis bv. 1 str. Rev.1]
 gi|17983492|gb|AAL52667.1| DNA repair protein rada [Brucella melitensis bv. 1 str. 16M]
 gi|260153539|gb|EEW88631.1| RadA family protein [Brucella melitensis bv. 1 str. 16M]
 gi|263001362|gb|EEZ13937.1| DNA repair protein RadA [Brucella melitensis bv. 1 str. Rev.1]
          Length = 467

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 75/214 (35%), Gaps = 6/214 (2%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG  + L S     E    + SG   LD   G GGF +G  + I G    GK+TL     
Sbjct: 54  KGRAVALTSLSGEIEDAPRIISGISELDRVTG-GGFVRGSALLIGGDPGIGKSTLLTQAA 112

Query: 89  AQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALE-ITDMLVRSGA 145
           A     G    +V  E A+  I   A++LGV    + ++     E  +  I+     S  
Sbjct: 113 AALSNRGHRIVYVSGEEAVAQIRLRAQRLGVAASAVELAAETNVEDIIATISSDNSGSKR 172

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
            D+++IDS+  L            +     A+ M +   K T +       +    Q+  
Sbjct: 173 PDLVIIDSIQTLWTDMADSAPGTVTQVRSSAQAMIRYA-KQTGAAVVLVGHVTKDGQIAG 231

Query: 206 -KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
            ++            G     Y  +R    R G 
Sbjct: 232 PRVVEHMVDGVLYFEGEGGHHYRILRTVKNRFGP 265


>gi|110835046|ref|YP_693905.1| DNA repair protein RadA [Alcanivorax borkumensis SK2]
 gi|110648157|emb|CAL17633.1| DNA repair protein RadA [Alcanivorax borkumensis SK2]
          Length = 457

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 84/229 (36%), Gaps = 20/229 (8%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + E    +SSG   LD  LG GG   G  + I G   +GK+TL L T+ +   +  +C +
Sbjct: 70  VLEETPRISSGMGELDRVLG-GGLVPGSAILIGGHPGAGKSTLLLQTLCRLSDS-QSCLY 127

Query: 101 VDAEHALDSIYARKLGVDL--KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           +  E +L  +  R   + L  + L ++     EQ LE+    +      ++V+DS+  + 
Sbjct: 128 ITGEESLSQVAMRADRLKLPKEKLRLAAETDVEQILELARKEMPK----VLVVDSIQVMF 183

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS--PET 216
             A        +     A         LT    ++  +L+ +  +     +         
Sbjct: 184 LAALQSAPGSVAQVRECAAA-------LTRFAKQTGTVLLLVGHVTKDGTLAGPKVLEHM 236

Query: 217 TTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
                 L+  +  R    R   +K++     N+  V  +  +     K 
Sbjct: 237 IDCSLMLEGSTDSRFRTLRG--LKNRFGAV-NELGVFAMTGEGLKEVKN 282


>gi|322706756|gb|EFY98336.1| hypothetical protein MAA_06445 [Metarhizium anisopliae ARSEF 23]
          Length = 386

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 12/67 (17%)

Query: 48  VSSGSLGLDIAL------------GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
           +S+G   LD AL             +GG  +G+I EI+GP  +GKT +++   A S   G
Sbjct: 68  LSTGLEELDQALLPPTPAGSPGSTSVGGIKRGQITEIWGPSGTGKTAVSIQLAANSIHNG 127

Query: 96  GTCAFVD 102
               ++D
Sbjct: 128 NDVVWID 134


>gi|226950962|ref|YP_002806053.1| DNA repair protein RadA [Clostridium botulinum A2 str. Kyoto]
 gi|226842386|gb|ACO85052.1| DNA repair protein RadA [Clostridium botulinum A2 str. Kyoto]
          Length = 452

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 62/165 (37%), Gaps = 13/165 (7%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + +G   L+  LG GG  KG +  I G    GK+T+ L          G   +V  E 
Sbjct: 66  ERLDTGINELNRVLG-GGIVKGSLTLISGSPGIGKSTILLQAANNIATKYGKILYVSGEE 124

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           + + I  R     LK +        E  ++I    + +     ++IDS+  L  ++E+  
Sbjct: 125 SEEQIKMRA--DRLKVISKDIYILSETNVDIIKEHITTINPKFVIIDSIQTLF-KSELSS 181

Query: 166 DMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
             G  S     +  +          IS+S  I  FI     K G 
Sbjct: 182 APGTVSQVRQCSNDIM--------LISKSNNIPFFIVAHVTKQGE 218


>gi|170760412|ref|YP_001788850.1| DNA repair protein RadA [Clostridium botulinum A3 str. Loch Maree]
 gi|169407401|gb|ACA55812.1| DNA repair protein RadA [Clostridium botulinum A3 str. Loch Maree]
          Length = 452

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 62/165 (37%), Gaps = 13/165 (7%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + +G   L+  LG GG  KG +  I G    GK+T+ L          G   +V  E 
Sbjct: 66  ERLDTGINELNRVLG-GGIVKGSLTLISGSPGIGKSTILLQAANNIATKYGKILYVSGEE 124

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           + + I  R     LK +        E  ++I    + +     ++IDS+  L  ++E+  
Sbjct: 125 SEEQIKMRA--DRLKVISKDIYILSETNVDIIKEHITTINPKFVIIDSIQTLF-KSELSS 181

Query: 166 DMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
             G  S     +  +          IS+S  I  FI     K G 
Sbjct: 182 APGTVSQVRQCSNDIM--------LISKSNNIPFFIVAHVTKQGE 218


>gi|255088451|ref|XP_002506148.1| Rad51 DNA recombinase 2 [Micromonas sp. RCC299]
 gi|226521419|gb|ACO67406.1| Rad51 DNA recombinase 2 [Micromonas sp. RCC299]
          Length = 440

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 65/197 (32%), Gaps = 39/197 (19%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---GGT---CAFVDAEHALD 108
           LD ALG GG P G I E+ GP  +GKT + L            GG      F+D E    
Sbjct: 113 LDDALG-GGVPTGSISELVGPAGAGKTQMCLTLACACAAPKRCGGLESGVVFIDTEQRFS 171

Query: 109 SIY------------------------ARKLGVDLKNLLISQPDTGEQALEITDMLVR-- 142
           S                           R+L      +L+  P T  + L+  + L    
Sbjct: 172 SQRLAEIARAKFPETLSPAHAPDAASAERELESLTSRILVLTPSTLSEMLQRLNGLEEAL 231

Query: 143 -SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
               V ++++DSVAAL          G      +  L+ Q    L     R        N
Sbjct: 232 IDRGVRLLIVDSVAALA-----RAQFGRGQLTQRQELLGQIASALKQLAERLGMAAFVTN 286

Query: 202 QMRMKIGVMFGSPETTT 218
           Q+  ++G        T 
Sbjct: 287 QVTTRVGARVRHAHDTA 303


>gi|225626957|ref|ZP_03784996.1| DNA repair protein RadA [Brucella ceti str. Cudo]
 gi|254709596|ref|ZP_05171407.1| DNA repair protein RadA [Brucella pinnipedialis B2/94]
 gi|256031088|ref|ZP_05444702.1| DNA repair protein RadA [Brucella pinnipedialis M292/94/1]
 gi|260168219|ref|ZP_05755030.1| DNA repair protein RadA [Brucella sp. F5/99]
 gi|261317124|ref|ZP_05956321.1| DNA repair protein RadA [Brucella pinnipedialis B2/94]
 gi|261757680|ref|ZP_06001389.1| DNA repair protein [Brucella sp. F5/99]
 gi|265988162|ref|ZP_06100719.1| DNA repair protein RadA [Brucella pinnipedialis M292/94/1]
 gi|225618614|gb|EEH15657.1| DNA repair protein RadA [Brucella ceti str. Cudo]
 gi|261296347|gb|EEX99843.1| DNA repair protein RadA [Brucella pinnipedialis B2/94]
 gi|261737664|gb|EEY25660.1| DNA repair protein [Brucella sp. F5/99]
 gi|264660359|gb|EEZ30620.1| DNA repair protein RadA [Brucella pinnipedialis M292/94/1]
          Length = 467

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 75/214 (35%), Gaps = 6/214 (2%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG  + L S     E    + SG   LD   G GGF +G  + I G    GK+TL     
Sbjct: 54  KGRAVALTSLSGEIEDAPRIISGISELDRVTG-GGFVRGSALLIGGDPGIGKSTLLTQAA 112

Query: 89  AQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALE-ITDMLVRSGA 145
           A     G    +V  E A+  I   A++LGV    + ++     E  +  I+     S  
Sbjct: 113 AALSNRGHRIVYVSGEEAVAQIRLRAQRLGVAASAVELAAETNVEDIIATISSDNSGSKR 172

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
            D+++IDS+  L            +     A+ M +   K T +       +    Q+  
Sbjct: 173 PDLVIIDSIQTLWTDMADSAPGTVTQVRSSAQAMIRYA-KQTGAAVVLVGHVTKDGQIAG 231

Query: 206 -KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
            ++            G     Y  +R    R G 
Sbjct: 232 PRVVEHMVDGVLYFEGEGGHHYRILRTVKNRFGP 265


>gi|172056113|ref|YP_001812573.1| DNA repair protein RadA [Exiguobacterium sibiricum 255-15]
 gi|171988634|gb|ACB59556.1| DNA repair protein RadA [Exiguobacterium sibiricum 255-15]
          Length = 461

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 77/189 (40%), Gaps = 15/189 (7%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GS   D  LG GG   G +V + G    GK+T+ L T A+    G    ++  E +L  
Sbjct: 78  TGSGEFDRVLG-GGIVPGSMVLVGGDPGIGKSTILLQTSARLAARGEKVLYISGEESLKQ 136

Query: 110 --IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
             + A +LG+  ++L +         + + + +V       ++IDS+  +    EI+   
Sbjct: 137 TKLRAERLGLPTQDLFVLSETD----MNMIERVVDEENPAFLIIDSIQTVY-IDEIQSAP 191

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G      +          +   I++S+ I +FI     K G + G        +A+ ++ 
Sbjct: 192 GSVTQVRE-------CTAMLMKIAKSRGIAIFIVGHVTKQGSIAGPRLLEHMVDAVLYFE 244

Query: 228 SVRLDIRRV 236
             R    R+
Sbjct: 245 GERHHTFRI 253


>gi|255937411|ref|XP_002559732.1| Pc13g13180 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211584352|emb|CAP92387.1| Pc13g13180 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 523

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 68/186 (36%), Gaps = 26/186 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-----QSQKTGGTCAFV 101
            +S+    +D  LG GG P G + E+ G   SGKT   L         + Q       ++
Sbjct: 105 TISTLDPAMDALLG-GGIPTGYVTEVTGESGSGKTQFLLSLCLAVQLPKPQGLQRRAIYI 163

Query: 102 DAEHALDSIYARKL---GVDLKNLLISQPDTGEQALEITDMLVRSGAVD----------- 147
             EH+L +    ++      L  L   Q  + +  L I  M + S               
Sbjct: 164 STEHSLSTPRLSQILECHPVLSTLPAEQTPSLQDILSINAMDLESQDHILNYHLPVAIER 223

Query: 148 ----IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
               +++IDS+ +   RAE E +        ++  +++    L +   +    +V  NQ+
Sbjct: 224 YDIGLVIIDSITS-NYRAEHESN-SLQANAKRSSELAKLGHLLRNLAVKEDIAIVLANQV 281

Query: 204 RMKIGV 209
             +   
Sbjct: 282 SDRFES 287


>gi|254492150|ref|ZP_05105325.1| DNA repair protein RadA [Methylophaga thiooxidans DMS010]
 gi|224462702|gb|EEF78976.1| DNA repair protein RadA [Methylophaga thiooxydans DMS010]
          Length = 377

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 50/137 (36%), Gaps = 4/137 (2%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGTCAFVDAEHAL 107
           ++G   LD  LG GG   G +V I G    GK+TL L  +A     TG    ++  E +L
Sbjct: 78  TTGLPELDRVLG-GGLVTGSVVLIGGDPGIGKSTLLLQAMATMADSTGVKPLYISGEESL 136

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
             I  R   + L+   +           I     R     ++VIDS+  +          
Sbjct: 137 QQIRLRAERLQLEQAPLELLAETHAEQMIATA--RQRQPQVMVIDSIQTVFTELLQSAPG 194

Query: 168 GESLPGMQARLMSQALR 184
             +     A  + +  +
Sbjct: 195 TVAQVRESAAQLVRFAK 211


>gi|320166280|gb|EFW43179.1| RAD51L1 [Capsaspora owczarzaki ATCC 30864]
          Length = 358

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 56/169 (33%), Gaps = 34/169 (20%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS------QKTGGTCAFV 101
           + +    LD AL  GGF    I E+ GP   GKT   +    Q+         GG   ++
Sbjct: 84  LPTSLAQLDAAL-RGGFAFSTITELVGPSGCGKTQFCMMLAVQASLPLEHGGLGGGVVYI 142

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           D E A  +                        L+  D  +      ++++DSVA+L  R 
Sbjct: 143 DTESAFSATR----------------------LDTLDQAIVERGAKLVILDSVASLV-RK 179

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           E +          +   +S     L          +V  NQ+   + + 
Sbjct: 180 EYDSK----SMVQRTAYLSNVASVLKYLAESFSIPIVVTNQVTTSVSMR 224


>gi|258509335|ref|YP_003172086.1| DNA repair protein RadA [Lactobacillus rhamnosus GG]
 gi|257149262|emb|CAR88235.1| DNA repair protein RadA [Lactobacillus rhamnosus GG]
 gi|259650616|dbj|BAI42778.1| DNA repair protein RadA [Lactobacillus rhamnosus GG]
          Length = 454

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 71/188 (37%), Gaps = 20/188 (10%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            V +G   L+  LG GG   G +V I G    GK+TL L    Q   TGGT  +V  E +
Sbjct: 69  RVKTGLAELNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSGQLASTGGTVLYVSGEES 127

Query: 107 LDSIYARKLGVDLKNL-LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
              I  R   + + N  +   P+T   ++E     +     D +VIDSV  +        
Sbjct: 128 ASQIKMRAGRLGVANSGMYLYPETDMPSIENV---IDQMQPDYVVIDSVQTM-------N 177

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
               +        + +   +L   I++SK + +FI     K G +        G   L+ 
Sbjct: 178 VPDMNSAVGSVAQIREVTAELMR-IAKSKGVTIFIVGHVTKEGAI-------AGPKILEH 229

Query: 226 YSSVRLDI 233
                L  
Sbjct: 230 MVDTVLYF 237


>gi|148559549|ref|YP_001258468.1| DNA repair protein RadA [Brucella ovis ATCC 25840]
 gi|225851985|ref|YP_002732218.1| DNA repair protein RadA [Brucella melitensis ATCC 23457]
 gi|254701253|ref|ZP_05163081.1| DNA repair protein RadA [Brucella suis bv. 5 str. 513]
 gi|254707823|ref|ZP_05169651.1| DNA repair protein RadA [Brucella pinnipedialis M163/99/10]
 gi|254718626|ref|ZP_05180437.1| DNA repair protein RadA [Brucella sp. 83/13]
 gi|256112973|ref|ZP_05453876.1| DNA repair protein RadA [Brucella melitensis bv. 3 str. Ether]
 gi|256264508|ref|ZP_05467040.1| RadA [Brucella melitensis bv. 2 str. 63/9]
 gi|256368903|ref|YP_003106409.1| DNA repair protein RadA [Brucella microti CCM 4915]
 gi|261315310|ref|ZP_05954507.1| DNA repair protein RadA [Brucella pinnipedialis M163/99/10]
 gi|261751792|ref|ZP_05995501.1| DNA repair protein RadA [Brucella suis bv. 5 str. 513]
 gi|265983604|ref|ZP_06096339.1| DNA repair protein RadA [Brucella sp. 83/13]
 gi|265994408|ref|ZP_06106965.1| DNA repair protein RadA [Brucella melitensis bv. 3 str. Ether]
 gi|306839854|ref|ZP_07472652.1| DNA repair protein RadA [Brucella sp. NF 2653]
 gi|306845078|ref|ZP_07477658.1| DNA repair protein RadA [Brucella sp. BO1]
 gi|148370806|gb|ABQ60785.1| DNA repair protein RadA [Brucella ovis ATCC 25840]
 gi|225640350|gb|ACO00264.1| DNA repair protein RadA [Brucella melitensis ATCC 23457]
 gi|255999061|gb|ACU47460.1| DNA repair protein RadA [Brucella microti CCM 4915]
 gi|261304336|gb|EEY07833.1| DNA repair protein RadA [Brucella pinnipedialis M163/99/10]
 gi|261741545|gb|EEY29471.1| DNA repair protein RadA [Brucella suis bv. 5 str. 513]
 gi|262765521|gb|EEZ11310.1| DNA repair protein RadA [Brucella melitensis bv. 3 str. Ether]
 gi|263094841|gb|EEZ18579.1| RadA [Brucella melitensis bv. 2 str. 63/9]
 gi|264662196|gb|EEZ32457.1| DNA repair protein RadA [Brucella sp. 83/13]
 gi|306274493|gb|EFM56288.1| DNA repair protein RadA [Brucella sp. BO1]
 gi|306405040|gb|EFM61321.1| DNA repair protein RadA [Brucella sp. NF 2653]
 gi|326408481|gb|ADZ65546.1| DNA repair protein RadA [Brucella melitensis M28]
 gi|326538197|gb|ADZ86412.1| DNA repair protein RadA [Brucella melitensis M5-90]
          Length = 467

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 75/214 (35%), Gaps = 6/214 (2%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG  + L S     E    + SG   LD   G GGF +G  + I G    GK+TL     
Sbjct: 54  KGRAVALTSLSGEIEDAPRIISGISELDRVTG-GGFVRGSALLIGGDPGIGKSTLLTQAA 112

Query: 89  AQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALE-ITDMLVRSGA 145
           A     G    +V  E A+  I   A++LGV    + ++     E  +  I+     S  
Sbjct: 113 AALSNRGHRIVYVSGEEAVAQIRLRAQRLGVAASAVELAAETNVEDIIATISSDNSGSKR 172

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
            D+++IDS+  L            +     A+ M +   K T +       +    Q+  
Sbjct: 173 PDLVIIDSIQTLWTDMADSAPGTVTQVRSSAQAMIRYA-KQTGAAVVLVGHVTKDGQIAG 231

Query: 206 -KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
            ++            G     Y  +R    R G 
Sbjct: 232 PRVVEHMVDGVLYFEGEGGHHYRILRTVKNRFGP 265


>gi|23501350|ref|NP_697477.1| DNA repair protein RadA [Brucella suis 1330]
 gi|161618421|ref|YP_001592308.1| DNA repair protein RadA [Brucella canis ATCC 23365]
 gi|163842729|ref|YP_001627133.1| DNA repair protein RadA [Brucella suis ATCC 23445]
 gi|254703800|ref|ZP_05165628.1| DNA repair protein RadA [Brucella suis bv. 3 str. 686]
 gi|260566947|ref|ZP_05837417.1| RadA family protein [Brucella suis bv. 4 str. 40]
 gi|261754447|ref|ZP_05998156.1| DNA repair protein RadA [Brucella suis bv. 3 str. 686]
 gi|23347242|gb|AAN29392.1| DNA repair protein RadA [Brucella suis 1330]
 gi|161335232|gb|ABX61537.1| DNA repair protein RadA [Brucella canis ATCC 23365]
 gi|163673452|gb|ABY37563.1| DNA repair protein RadA [Brucella suis ATCC 23445]
 gi|260156465|gb|EEW91545.1| RadA family protein [Brucella suis bv. 4 str. 40]
 gi|261744200|gb|EEY32126.1| DNA repair protein RadA [Brucella suis bv. 3 str. 686]
          Length = 467

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 75/214 (35%), Gaps = 6/214 (2%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG  + L S     E    + SG   LD   G GGF +G  + I G    GK+TL     
Sbjct: 54  KGRTVALTSLSGEIEDAPRIISGISELDRVTG-GGFVRGSALLIGGDPGIGKSTLLTQAA 112

Query: 89  AQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALE-ITDMLVRSGA 145
           A     G    +V  E A+  I   A++LGV    + ++     E  +  I+     S  
Sbjct: 113 AALSNRGHRIVYVSGEEAVAQIRLRAQRLGVAASAVELAAETNVEDIIATISSDNSGSKR 172

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
            D+++IDS+  L            +     A+ M +   K T +       +    Q+  
Sbjct: 173 PDLVIIDSIQTLWTDMADSAPGTVTQVRSSAQAMIRYA-KQTGAAVVLVGHVTKDGQIAG 231

Query: 206 -KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
            ++            G     Y  +R    R G 
Sbjct: 232 PRVVEHMVDGVLYFEGEGGHHYRILRTVKNRFGP 265


>gi|256159156|ref|ZP_05456973.1| DNA repair protein RadA [Brucella ceti M490/95/1]
 gi|256254491|ref|ZP_05460027.1| DNA repair protein RadA [Brucella ceti B1/94]
 gi|261221665|ref|ZP_05935946.1| DNA repair protein RadA [Brucella ceti B1/94]
 gi|265997627|ref|ZP_06110184.1| DNA repair protein RadA [Brucella ceti M490/95/1]
 gi|260920249|gb|EEX86902.1| DNA repair protein RadA [Brucella ceti B1/94]
 gi|262552095|gb|EEZ08085.1| DNA repair protein RadA [Brucella ceti M490/95/1]
          Length = 467

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 75/214 (35%), Gaps = 6/214 (2%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG  + L S     E    + SG   LD   G GGF +G  + I G    GK+TL     
Sbjct: 54  KGRAVALTSLSGEIEDAPRIISGISELDRVTG-GGFVRGSALLIGGDPGIGKSTLLTQAA 112

Query: 89  AQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALE-ITDMLVRSGA 145
           A     G    +V  E A+  I   A++LGV    + ++     E  +  I+     S  
Sbjct: 113 AALSNRGHRIVYVSGEEAVAQIRLRAQRLGVAASAVELAAETNVEDIIATISSDNSGSKR 172

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
            D+++IDS+  L            +     A+ M +   K T +       +    Q+  
Sbjct: 173 PDLVIIDSIQTLWTDMADSAPGTVTQVRSSAQAMIRYA-KQTGAAVVLVGHVTKDGQIAG 231

Query: 206 -KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
            ++            G     Y  +R    R G 
Sbjct: 232 PRVVEHMVDGVLYFEGEGGHHYRILRTVKNRFGP 265


>gi|1184031|emb|CAA64816.1| recA [Acidithiobacillus ferrooxidans]
          Length = 50

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 23/31 (74%)

Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNA 335
           R+GQG++N++ +L+ + E+A NIE  +R  A
Sbjct: 1   RIGQGKDNARQYLKVHPELAANIEQRIRAAA 31


>gi|303274861|ref|XP_003056745.1| Rad51 DNA recombinase 2 [Micromonas pusilla CCMP1545]
 gi|226461097|gb|EEH58390.1| Rad51 DNA recombinase 2 [Micromonas pusilla CCMP1545]
          Length = 437

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 67/198 (33%), Gaps = 42/198 (21%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCAFV 101
           + +    LD+AL  GG P G I E+ GP  +GKT   L                G   F+
Sbjct: 112 LPTHLAALDLAL-KGGVPTGSISELVGPAGAGKTQFCLTLAVAAAAPKSVGGLDGGVVFI 170

Query: 102 DAEHAL---------------------------DSIYARKLGVDLKNLLISQPDTGEQAL 134
           D E                              ++     L      +L+  P T  + L
Sbjct: 171 DTEQKFSGVRLAEIARAKFPSVYGDGDGDGAPSEADARASLTTLTSRVLVLTPSTLSEIL 230

Query: 135 EITDMLVR---SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
           +  + L        V ++V+DS+AAL  RAE     G      +  L+ Q    L     
Sbjct: 231 QRLNGLEEALIDHGVRLLVVDSMAALA-RAEF----GRGQLQQRQELLGQIASVLKQQAE 285

Query: 192 RSKCILVFINQMRMKIGV 209
           R    +   NQ+  +IG 
Sbjct: 286 RLHLAVFVTNQVTTRIGA 303


>gi|15072785|emb|CAC47959.1| RecA-like protein [Sulfolobus acidocaldarius]
          Length = 198

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 3/80 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +  +S+G    D  +  GG P+G  V + G   +GKT  +LH +AQ  K G  C +V  E
Sbjct: 1   VIRLSTGIYEFDKLI-EGGIPQGFFVALTGEPGTGKTIFSLHFVAQGLKEGNPCVYVTTE 59

Query: 105 HALDSI--YARKLGVDLKNL 122
            + DSI   A++ G D +  
Sbjct: 60  ESRDSIVKQAKQFGWDFEEH 79


>gi|294655372|ref|XP_457511.2| DEHA2B13024p [Debaryomyces hansenii CBS767]
 gi|199429908|emb|CAG85517.2| DEHA2B13024p [Debaryomyces hansenii]
          Length = 569

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 65/222 (29%), Gaps = 17/222 (7%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           +    +    + +G   LD  L  GG P G I EI+G    GK+ L L     +Q  G  
Sbjct: 87  KEQTGDKCHFIPTGLEALDRQLN-GGIPLGEITEIFGASGCGKSQLLLQLCIYTQLVGDP 145

Query: 98  ----CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
               C ++  E     +  R+L   + +                         D  +   
Sbjct: 146 ENNQCIYISTES---PLETRRLHDMIDHYNAKSDKKVSMDNISCIYCQDIENQDHTLFTQ 202

Query: 154 VAALTP------RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +           RA I   +   L   +A   +  +     +   +        +++ K+
Sbjct: 203 LPVKLSQEKGKVRAIIIDSISHHLRLEEAITNTMYITDHIKAQEEALTDSKEYAEIKTKL 262

Query: 208 GVMFGSPETTTGGNALKFY---SSVRLDIRRVGSIKDKDSIT 246
              F +   +T     +       + L    +   KD +   
Sbjct: 263 DQQFKAFFKSTPKYQNRIAKTQYLMLLHRHLLSIAKDNNIAV 304


>gi|157129016|ref|XP_001655247.1| RAD51C protein, putative [Aedes aegypti]
 gi|108872406|gb|EAT36631.1| RAD51C protein, putative [Aedes aegypti]
          Length = 274

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 37/115 (32%), Gaps = 15/115 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           + +    LD A+G  G   G I E+ GP  SGKT + L     +Q        G    + 
Sbjct: 19  IVTFCRDLDQAIGN-GISVGMITELCGPPGSGKTQMCLQLCINTQIPVQLGGLGAKAIYF 77

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
           D          +++         S   T  Q L        +       +DS+  
Sbjct: 78  DTNFGFHPCRLQEIA--------SACVTHCQKLVQIHKKELATVTRDFTVDSLMN 124


>gi|257053419|ref|YP_003131252.1| putative circadian clock protein, KaiC [Halorhabdus utahensis DSM
           12940]
 gi|256692182|gb|ACV12519.1| putative circadian clock protein, KaiC [Halorhabdus utahensis DSM
           12940]
          Length = 489

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 72/205 (35%), Gaps = 5/205 (2%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
           G      E  E +SSG   LD  LG GG  +G +  + GP  +GKTT  +  + ++    
Sbjct: 231 GEVERSIED-ETLSSGVPELDSLLG-GGIDRGTVTILSGPTGAGKTTTGVQFLTEAALDK 288

Query: 96  GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
                   E A  +I  R   + +    + +       +EI       G  + ++ ++V 
Sbjct: 289 TEGVLFQFEEAERTIRKRADAIGIPLRTVIEEGCLS-IVEIEPDEYTVGEFEQLIREAVD 347

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
                  I+G  G           + AL ++   +  +    + +N++    G    + E
Sbjct: 348 DGVELVMIDGTQGFKQNLRGLEDPTAALLRVGRYLRSAGVSTILVNEVHNITGDFRATEE 407

Query: 216 TTTGGNALKFYSSVRLDIRRVGSIK 240
            T   N       +R    R    K
Sbjct: 408 RT--SNLADNLVFLRHVEYRGELRK 430



 Score = 40.6 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 79/264 (29%), Gaps = 16/264 (6%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +  +S+G  GLD  L  GG  +GR V + G   +GKT   L+ ++          +V+ 
Sbjct: 2   QLSRLSTGVAGLDAVL-DGGLVRGRNVLVRGTPGAGKTIFGLYFLSAGIAADERSLYVNL 60

Query: 104 --EHALDSIYARKLGVDLKNLLISQPDTGEQAL---EITDMLVRSGAVDIIVIDSVAALT 158
               A     A    +  + +         +     E  D+   +       IDS+  + 
Sbjct: 61  GEPQAYVEETADAFDLQTEGIHFHNLSPTSEQFAEQESYDVFESAEVDQPDFIDSLRTVV 120

Query: 159 PRAEIEGDMGE-----SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
              E +  + +            R   + +  L   +      ++  +Q    +      
Sbjct: 121 DEVEPDRVLLDPITEFRYLTSDERQFRKGILGLLDYLKDVGATVMLTSQAGETVTDE-DL 179

Query: 214 PETTTGGNALKFYSSVR---LDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF-D 269
                G  +L+     R   +   R  S +      G       V  ++     +    D
Sbjct: 180 QFLVDGVVSLEVVQDSRAVQVSKFRGSSFRRGKHFYGIDDEGLTVWPRLVPGEVERSIED 239

Query: 270 IMYGEGISFFGELIDLGVKASIVD 293
                G+     L+  G+    V 
Sbjct: 240 ETLSSGVPELDSLLGGGIDRGTVT 263


>gi|168700349|ref|ZP_02732626.1| putative circadian clock protein, KaiC [Gemmata obscuriglobus UQM
           2246]
          Length = 506

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + + +VS+G  GLD  L  GG PKG +  + G   +GKTTL L  + + ++ G    ++ 
Sbjct: 6   DSLPLVSTGVPGLDDVL-CGGLPKGHLYLVEGDAGAGKTTLGLQFLLEGKRRGEKTLWIS 64

Query: 103 AEHALDSIYARKLGVDLK 120
                  + A        
Sbjct: 65  LSETESQLRATAASHRWD 82



 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 71/210 (33%), Gaps = 27/210 (12%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA--FVDA 103
           E VS+G   LD  LG GG  +G  + I GP   GK+T+A      +   G   A    D 
Sbjct: 251 EEVSTGLPPLDAMLG-GGVDRGASLLILGPAGVGKSTIASQLSVSAVARGEPVAVFLFDE 309

Query: 104 EHALDSIYARKLGVDLKNL----------LISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
                      LG+ +  L          +     T  +        V +  V ++VIDS
Sbjct: 310 TARAYVARGEGLGMGVSELIRGGRLRVRQIDPAEFTPGELAHTVRRDVETSGVRLVVIDS 369

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ---MRMKIGVM 210
           +        + G   E    M    +      LT    ++   ++ +NQ   M   +   
Sbjct: 370 LNG-----YLSGMPDERHLSMHLHEL------LTYLSYQNVVTVLTMNQDGFMGDSVAAP 418

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
                 T     L+++ S  +  R    +K
Sbjct: 419 VDVSYLTDAALMLRYFESEGVVRRAASVMK 448


>gi|121535701|ref|ZP_01667505.1| DNA repair protein RadA [Thermosinus carboxydivorans Nor1]
 gi|121305732|gb|EAX46670.1| DNA repair protein RadA [Thermosinus carboxydivorans Nor1]
          Length = 452

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 63/192 (32%), Gaps = 22/192 (11%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +   SSG    D  LG GG   G ++ I G    GK+TL L   A   +  G   +V  
Sbjct: 63  AVPRFSSGLAEFDRVLG-GGIVPGALILIGGDPGIGKSTLLLQVAAGVGRRQGRVLYVSG 121

Query: 104 EHALDSIYA--RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           E +         +LG    NL I         L+       +    ++VIDS+  +    
Sbjct: 122 EESAAQTRMRAERLGSLQDNLYIMTETN----LDAIAAAAANMKPALVVIDSIQTMYS-P 176

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
           E+    G          + ++  KL      +   +  I  +  +  +         G  
Sbjct: 177 ELAAAPG------SVSQVRESTGKLLRLAKETSIPIAVIGHVTKEGNI--------AGPR 222

Query: 222 ALKFYSSVRLDI 233
            L+    V L  
Sbjct: 223 LLEHMVDVVLYF 234


>gi|241951964|ref|XP_002418704.1| DNA repair protein, putative [Candida dubliniensis CD36]
 gi|223642043|emb|CAX44009.1| DNA repair protein, putative [Candida dubliniensis CD36]
          Length = 512

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 52/139 (37%), Gaps = 17/139 (12%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC- 98
           ++    E +S+G   +D  LG GG P G I EI+G    GK+      ++  +K   T  
Sbjct: 77  NVLLDSEFISTGLPSIDRELG-GGIPIGEITEIFGASGCGKSHFLFQLLSNCRKEFPTSK 135

Query: 99  -AFVDAEHALDSIYARKL--------GVDLKNLLISQPDTGEQALEITDMLVR------S 143
             ++  E  L++   +            DL ++        E    I    +        
Sbjct: 136 NIYISTESFLETKRLKDFIGTTSSNIDTDLDSISYIYCQDLESQDHILFTQLPLKLDSDK 195

Query: 144 GAVDIIVIDSVAALTPRAE 162
               ++VIDS+A    R +
Sbjct: 196 EKTKLLVIDSIAQHFRRED 214


>gi|209944604|gb|ACI96533.1| spindle D [Drosophila melanogaster]
          Length = 212

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 8/117 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           + +G+  LD   G GG   G +VE+ G   +GKT + L      Q         G+  F+
Sbjct: 46  ILTGNKALDTHFG-GGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFI 104

Query: 102 DAEHALDSIYARKLGVDLK-NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           D            L + L+       P+     +      VR   +D ++   ++  
Sbjct: 105 DTRQDFHPDRLMDLALKLERQYAHRVPEFKAHKMLQKIHYVRCPKLDQLMATVLSCH 161


>gi|209944588|gb|ACI96525.1| spindle D [Drosophila melanogaster]
 gi|209944592|gb|ACI96527.1| spindle D [Drosophila melanogaster]
 gi|209944598|gb|ACI96530.1| spindle D [Drosophila melanogaster]
          Length = 212

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 8/117 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           + +G+  LD   G GG   G +VE+ G   +GKT + L      Q         G+  F+
Sbjct: 46  ILTGNKALDTHFG-GGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFI 104

Query: 102 DAEHALDSIYARKLGVDLK-NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           D            L + L+       P+     +      VR   +D ++   ++  
Sbjct: 105 DTRQDFHPDRLMDLALKLERQYAHRVPEFKAHKMLQKIHYVRCPKLDQLMATVLSCH 161


>gi|209944574|gb|ACI96518.1| spindle D [Drosophila melanogaster]
          Length = 212

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 8/117 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           + +G+  LD   G GG   G +VE+ G   +GKT + L      Q         G+  F+
Sbjct: 46  ILTGNKALDTHFG-GGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFI 104

Query: 102 DAEHALDSIYARKLGVDLK-NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           D            L + L+       P+     +      VR   +D ++   ++  
Sbjct: 105 DTRQDFHPDRLMDLALKLERQYAHRVPEFKAHKMLQKIHYVRCPKLDQLMATVLSCH 161


>gi|258543957|ref|ZP_05704191.1| DNA repair protein RadA [Cardiobacterium hominis ATCC 15826]
 gi|258520803|gb|EEV89662.1| DNA repair protein RadA [Cardiobacterium hominis ATCC 15826]
          Length = 458

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 82/261 (31%), Gaps = 19/261 (7%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V SG    D  LG GG  +G +V I G    GK+TL L T+    ++   C +V  E + 
Sbjct: 73  VPSGISEFDRVLG-GGLVRGSVVLIGGDPGIGKSTLLLQTVHHLAQS-MPCLYVSGEES- 129

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
                      L           E  +E       +    ++V+DS+  L   A      
Sbjct: 130 -PRQIGLRAERLGLARERIVLFSETQIERILATAAAEQPAVLVVDSIQTLYSEA------ 182

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
             S        + +   +L      S   +  I  +  +  +             L F S
Sbjct: 183 -LSAAPGAVSQLRECAAQLVRFAKSSGTTVFLIGHVTKEGAIAGPRVLEHMVDTVLYFES 241

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS--------FF 279
                 R + ++K++           +++N +          +   +G          + 
Sbjct: 242 EAGSRFRMLRAVKNRFGPVNELGMFAMLENGLKPVSNPSAIFLSRPDGQQPGSAVFPVWE 301

Query: 280 GELIDLGVKASIVDKSGAWFS 300
           G    L    ++VD  G  ++
Sbjct: 302 GSRALLVEVQALVDGGGGGYA 322


>gi|115677903|ref|XP_001204119.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115714876|ref|XP_001199420.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 355

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 88/251 (35%), Gaps = 37/251 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGGTC---AFV 101
           +++G   LD  L  GG     I EI G  ++GKT L L     +Q   + GG      ++
Sbjct: 81  LTTGCPILDEFL-HGGILVKGITEIAGQSAAGKTQLCLQLCLTAQLPVQQGGLANGVVYI 139

Query: 102 DAEHALDSIYARKL------------------GVDLKNLLISQPDTGEQALE-ITDMLVR 142
             E    S   ++L                  G  +     ++ D     LE    +L+ 
Sbjct: 140 CTEDVFPSKRLQQLISSFNRRIGPALAKQLAVGDHIYVEHAAEKDQLWHCLEKRLPLLLS 199

Query: 143 SGAVDIIVIDSVAALT-PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
            G V + V+DS+AA+     E+   +       +AR + +    L    S+    +V +N
Sbjct: 200 RGMVKLAVVDSLAAIFRSEFELRDTI------RRARELQRVGAHLHRLSSQFNVAVVCVN 253

Query: 202 QMRMKIGVMFGSPE---TTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           Q+   +       E       G        VRL + R          T N+T    V  +
Sbjct: 254 QVTANMEASLDPTESEMMPALGLTWSNIVKVRLMLSRTPYRLPPSDTTNNRTDRGSVNGE 313

Query: 259 MASP-FKQVEF 268
            +    ++ E 
Sbjct: 314 CSHESEQKAEI 324


>gi|16119739|ref|NP_396445.1| hypothetical protein Atu5510 [Agrobacterium tumefaciens str. C58]
 gi|15162329|gb|AAK90886.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 502

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 62/173 (35%), Gaps = 7/173 (4%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF--VDAEH 105
           V+SG    D  LG GG  +G    + GP  +GK+  AL  +  +   G   A    D E 
Sbjct: 251 VASGISEFDDLLG-GGVARGSSTLLIGPAGTGKSLFALQFVEAAVSRGERAAIFVFDEEL 309

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
            L     +++G+DL+ +            ++    +  G     V D VA+   +  +  
Sbjct: 310 GLLFDRTKEMGLDLEAMRD---KNLLHIEQLDAAELSPGEFSQRVRDKVASFDAKTVVID 366

Query: 166 DM-GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
            + G      +   +   + +L   ++R              +G M    + T
Sbjct: 367 SINGYQAAMPEENALILHMHELLQYLNRQGANTFITVAQHGLVGDMKSPVDVT 419



 Score = 43.3 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 91/267 (34%), Gaps = 20/267 (7%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
             +    +G  GLD  L  GG  +  +  + G   SGKTT+AL  + +    G  C ++ 
Sbjct: 4   NSVAKAKTGVEGLDDILS-GGLSRRHVFLLEGAPGSGKTTIALQFLLEGATIGERCLYIT 62

Query: 103 AEHALDSIYA------RKLGVDLKNLLISQPDT-----GEQALEITDMLVRSGAVDIIVI 151
                + +        + +G  ++   +  P++      +Q+L  +  L       +I  
Sbjct: 63  LSETEEELRDSASSHGKDIGDQVEIFELVPPESLLDADQQQSLLYSSDLELGETTKLIFE 122

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
                   R  I+      L    +    + +  L    SRS   ++ ++ M        
Sbjct: 123 AFERVKPHRVVIDSLSEIRLLAQSSLRYRRQILALKHFFSRSDATVLLLDDMTSDAMDKT 182

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIK-DKDSITG--NQTRVKVVKNKMASPFKQVEF 268
                    +  +       + RR+  +K    +  G  +   +K    ++    + +E 
Sbjct: 183 VHSVVHGVIHLEQLAPDYGSERRRLRVLKYRGQAFRGGYHDFTIKTGGVEVFPRLRALEH 242

Query: 269 DIMY-----GEGISFFGELIDLGVKAS 290
            + +       GIS F +L+  GV   
Sbjct: 243 RVAFERTLVASGISEFDDLLGGGVARG 269


>gi|325967676|ref|YP_004243868.1| circadian clock protein, KaiC [Vulcanisaeta moutnovskia 768-28]
 gi|323706879|gb|ADY00366.1| putative circadian clock protein, KaiC [Vulcanisaeta moutnovskia
           768-28]
          Length = 254

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV---D 102
           +++ +G  GLD ALG GG  +GR   I G   +GKT L+L  +       G        D
Sbjct: 6   DLIPTGIPGLDEALG-GGLIRGRTYLISGETGTGKTLLSLSFLIDGIYKYGEPGIYVSVD 64

Query: 103 AEHALDSIYARKLGVDLKNLLI 124
             +       ++ G DL+ L  
Sbjct: 65  ETYDQLMNGVKRFGWDLEALRE 86


>gi|163746603|ref|ZP_02153961.1| DNA repair protein RadA [Oceanibulbus indolifex HEL-45]
 gi|161380488|gb|EDQ04899.1| DNA repair protein RadA [Oceanibulbus indolifex HEL-45]
          Length = 455

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 57/163 (34%), Gaps = 5/163 (3%)

Query: 25  RVYG--KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           +  G  +G+ ++L    +         SG   LD  LG G  P   I+ + G    GK+T
Sbjct: 46  KSLGARRGSAIELTDLATQETPPPRAQSGIAELDRVLGGGLVPASAIL-VGGDPGIGKST 104

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L   A   K+G    +V  E A   +  R   +DL    +         L      + 
Sbjct: 105 LLLQAAAHFAKSGLKTIYVSGEEASAQVRMRAQRLDLAEAPVKLAAETN--LRDILTTLE 162

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           +    + +IDS+  +            S     A  ++   ++
Sbjct: 163 AERPQLAIIDSIQTMWADNVESAPGSVSQVRAAAHELTSFAKR 205


>gi|224076582|ref|XP_002196350.1| PREDICTED: similar to RAD51 homolog C [Taeniopygia guttata]
          Length = 367

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 77/254 (30%), Gaps = 51/254 (20%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           + +    LD  LG GG    +I EI G    GKT L +      Q         G   F+
Sbjct: 90  IITFCSALDNILG-GGVQLTKITEICGAPGVGKTQLCMQLAVDVQIPECFGGIAGEAVFI 148

Query: 102 DAEHALDSIYAR-----------------------------KLGVDLKNLLISQPDTGEQ 132
           D E +                                     L   L ++   +     +
Sbjct: 149 DTEGSFMVDRVVDIAAACVQHCHLIAEAQQEEDHQKALETFSLENILSHIYYFRCRDYTE 208

Query: 133 ALE---ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
            L    +    +   +   +V+    A   R + E         ++ RL++   ++L   
Sbjct: 209 LLAQVYLLPEFLSEHSKVRLVVIDGIAFPFRHDFED------LSLRTRLLNGLAQQLIII 262

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR-----RVGSIKDKDS 244
            +  +  ++  NQM  +IG    +     G +     ++VRL        R+ ++    S
Sbjct: 263 ANDHRAAVILTNQMTTRIGQSQSTLVPALGES-WGHAATVRLIFHWDNSQRLATLYKSPS 321

Query: 245 ITGNQTRVKVVKNK 258
              +     +  + 
Sbjct: 322 QKESTIAYHITSHG 335


>gi|85058377|ref|YP_454079.1| DNA repair protein RadA [Sodalis glossinidius str. 'morsitans']
 gi|84778897|dbj|BAE73674.1| putative ATP-dependent protease [Sodalis glossinidius str.
           'morsitans']
          Length = 460

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 8/145 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E +   S+G   LD+ LG GG   G  + I G   +GK+TL L T+ +    G    +V
Sbjct: 71  LEALPRFSTGFKELDLVLG-GGMVPGSAILIGGSPGAGKSTLLLQTLCKLAV-GMKTLYV 128

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+    L +    + EQ      +        ++VIDS+  +  
Sbjct: 129 TGEESLQQVAMRAHRLGLPTDELNMLSETSIEQ----ICLTASQEKPRVMVIDSIQVMHM 184

Query: 160 RAEIEGDMGESLPGMQARLMSQALR 184
                     +     A  +++  +
Sbjct: 185 ADVQSSPGSVAQVRESAAYLTRFAK 209


>gi|212543955|ref|XP_002152132.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224]
 gi|210067039|gb|EEA21132.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224]
          Length = 442

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/253 (18%), Positives = 80/253 (31%), Gaps = 65/253 (25%)

Query: 48  VSSGSLGLDIAL--GIG----GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT--CA 99
           + +G  GLD AL    G    G P+G I EIYGP   GKT  +L+  A+    G      
Sbjct: 45  LPTGLDGLDDALCVTTGLLSSGIPRGSITEIYGPPGVGKTAFSLNIAAKVLTAGDDEKVI 104

Query: 100 FVDAEHALDSIYAR------------------------KLGVDLKNLLISQPDTGEQALE 135
           ++D    +     R                        KL   +  ++  +  +    L 
Sbjct: 105 WIDTGSPIPKPRLRDLLISNIKSSTTTTTTTTEVDITNKLNDCITRVIHIRAHSLPHLLS 164

Query: 136 ITDML---VRSGAVDIIVIDSVAA-----LTPRAEIEGDMG------------------- 168
           +              +IVID+V+A          E++  +G                   
Sbjct: 165 LFTHPPPNFPPKGTSLIVIDTVSAPFQSYFPNATELKSRLGLRQQHPQQDPGSGPGPLQA 224

Query: 169 -----ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT-GGNA 222
                + L   +  + S  + K+T   +     ++ +NQ   KI             G +
Sbjct: 225 QAHQLQWLLNRKWNVTSDMINKITKFAATHNLAVIVLNQTHTKIKGQPRPTLYPALAGGS 284

Query: 223 LKFYSSVRLDIRR 235
            +     R+ + R
Sbjct: 285 WETCVQTRIVLYR 297


>gi|187934989|ref|YP_001884448.1| DNA repair protein RadA [Clostridium botulinum B str. Eklund 17B]
 gi|187723142|gb|ACD24363.1| DNA repair protein RadA [Clostridium botulinum B str. Eklund 17B]
          Length = 455

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 56/141 (39%), Gaps = 7/141 (4%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E   +G   L+  LG GG  +G +  I G    GK+TL L T        G   +V  E 
Sbjct: 70  ERYDTGIKELNRVLG-GGLVRGSLTLISGDPGIGKSTLLLQTANNIAVKYGKVLYVSGEE 128

Query: 106 ALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           + + I  R  +LGV+ +NL I         L+   + +     + ++IDS+  +   +  
Sbjct: 129 SEEQIKIRGDRLGVNSENLFIISETN----LDAISIYIEQINPNFVIIDSIQTVFKESVS 184

Query: 164 EGDMGESLPGMQARLMSQALR 184
                 S     +  + +  +
Sbjct: 185 SAPGSVSQVKECSNTIMRMCK 205


>gi|223995735|ref|XP_002287541.1| hypothetical protein THAPSDRAFT_261577 [Thalassiosira pseudonana
           CCMP1335]
 gi|220976657|gb|EED94984.1| hypothetical protein THAPSDRAFT_261577 [Thalassiosira pseudonana
           CCMP1335]
          Length = 285

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 66/176 (37%), Gaps = 31/176 (17%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GTCAFVDAEHA 106
           + +G   LD +L +GGFP   I E+ G    GKT LA      + K+G G   ++D E  
Sbjct: 54  IPTGLPTLDSSL-LGGFPLCSISELVGRAGVGKTHLAQQLCVLAAKSGFGGAVYIDTEKK 112

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           L  +  R+L ++                      ++   V ++VIDS+AA   R      
Sbjct: 113 LSLVRLRELAME-------------------RNTMQRLPVKLVVIDSIAAPVRR--DFDM 151

Query: 167 MGE--------SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           M          +    +A  + Q  RKL          +V +NQ+         + 
Sbjct: 152 MSSSSTSKFSPNAATQRASFIFQVARKLKQLTHDHHLAVVVVNQVGSGGSDFRNNN 207


>gi|296128427|ref|YP_003635677.1| DNA repair protein RadA [Cellulomonas flavigena DSM 20109]
 gi|296020242|gb|ADG73478.1| DNA repair protein RadA [Cellulomonas flavigena DSM 20109]
          Length = 473

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 3/131 (2%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +G   LD  LG GG   G +V + G    GK+TL L   A++ +TG    +V  E +  
Sbjct: 85  PTGVDELDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLDVAARAARTGRKVLYVTGEESAA 143

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +  R     +  L  S     E  L I    + S   D++V+DSV   T         G
Sbjct: 144 QVRLRA--GRIHALAPSLLLASETDLGIVLGHIESVDPDLLVLDSVQTFTSAQVEGSPGG 201

Query: 169 ESLPGMQARLM 179
            +        +
Sbjct: 202 VAQVREVTAAL 212


>gi|323338366|gb|EGA79593.1| Rad57p [Saccharomyces cerevisiae Vin13]
          Length = 216

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 58/184 (31%), Gaps = 23/184 (12%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALD 108
           +D  LG GG     I EI+G  S+GK+ L +      Q        GG C ++  E  L 
Sbjct: 1   MDELLG-GGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKCVYITTEGDLP 59

Query: 109 SIYA----------RKLGVDLKNLLISQPDTGEQALEITDMLVR-----SGAVDIIVIDS 153
           +              KLG+   N+     +       I ++ +      S     +VI  
Sbjct: 60  TQRLESMLSSRPAYEKLGITQSNIFTVSCNDLINQEHIINVQLPILLERSKGSIKLVIID 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
             +   R E++              + +   KL          +V  NQ+  K       
Sbjct: 120 SISHHLRVELQNKSFRES-QENKNYLDRMAEKLQILAHDYSLSVVVANQVGDKPLANSPV 178

Query: 214 PETT 217
              T
Sbjct: 179 AHRT 182


>gi|254428451|ref|ZP_05042158.1| DNA repair protein RadA [Alcanivorax sp. DG881]
 gi|196194620|gb|EDX89579.1| DNA repair protein RadA [Alcanivorax sp. DG881]
          Length = 457

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 84/229 (36%), Gaps = 20/229 (8%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + E    +SSG   LD  LG GG   G  + I G   +GK+TL L T+ +   +  +C +
Sbjct: 70  VLEETPRISSGMGELDRVLG-GGLVPGSAILIGGHPGAGKSTLLLQTLCKLSDS-QSCLY 127

Query: 101 VDAEHALDSIYARKLGVDL--KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           +  E +L  +  R   + L  + L ++     EQ LE+    +      ++V+DS+  + 
Sbjct: 128 ITGEESLSQVAMRADRLKLPKEKLRLAAETDVEQILELARKEMPR----VLVVDSIQVMF 183

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS--PET 216
             A        +     A         LT    ++  +L+ +  +     +         
Sbjct: 184 LAALQSAPGSVAQVRECAAA-------LTRFAKQTGTVLLLVGHVTKDGTLAGPKVLEHM 236

Query: 217 TTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
                 L+  +  R    R   +K++     N+  V  +  +     K 
Sbjct: 237 IDCSLMLEGSTDSRFRTLRG--LKNRFGAV-NELGVFAMTGEGLKEVKN 282


>gi|149184536|ref|ZP_01862854.1| predicted repair protein [Erythrobacter sp. SD-21]
 gi|148831856|gb|EDL50289.1| predicted repair protein [Erythrobacter sp. SD-21]
          Length = 454

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 67/193 (34%), Gaps = 2/193 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +G    D ALG GG   G  + + G    GK+TL L   A+  + G + A+V  E A  
Sbjct: 71  RTGLAEFDRALG-GGLVPGSAILMGGDPGIGKSTLLLQAAAKVAREGHSVAYVSGEEASG 129

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +  R   + L +  +          +I   L +      +VIDS+  +           
Sbjct: 130 QVRMRAARLGLCDAPVKLAAATS-VRDILTTLGQMETPKFLVIDSIQTMHSDTIEGAPGT 188

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
            S     A  + +  ++   ++     +    N    ++         +  G     Y  
Sbjct: 189 VSQVRGCAFELIRYAKENGVALVLVGHVTKDGNIAGPRVLEHMVDVVMSFEGERSHQYRI 248

Query: 229 VRLDIRRVGSIKD 241
           +R    R G++ +
Sbjct: 249 LRALKNRFGAVDE 261


>gi|317143045|ref|XP_001818770.2| DNA repair protein (Rad57) [Aspergillus oryzae RIB40]
          Length = 600

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 73/211 (34%), Gaps = 31/211 (14%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-----KTGGTCAF 100
             +S+    LD  LG GG P G + E+ G   SGKT   L  +   Q       G    +
Sbjct: 139 SAISTLDTALDELLG-GGIPTGYVTEVTGESGSGKTQFLLSLLLAVQLPSPKGLGKNAVY 197

Query: 101 VDAEHALDSIYARKL---GVDLKNLLISQPDTGEQALEI---------------TDMLVR 142
           +  E  L +    +L      L  L   +  T E  L I                 + ++
Sbjct: 198 ISTEAPLSTPRLSQLINSNPYLSTLPRDRAPTLENILSINAMDLESQDHILNYQLPVAIQ 257

Query: 143 SGAVDIIVIDSVAALTPRAEIEGD--MGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
              V ++VIDS+ +   RAE      +G S    +   + Q    L +   +    +V  
Sbjct: 258 RYNVGLVVIDSITS-NYRAEHTSHNILGLSTRSGELTKLGQM---LRNLAVQEDIAIVVA 313

Query: 201 NQMRMKIGVMFGSPETT-TGGNALKFYSSVR 230
           NQ+  +   M         GG A     S +
Sbjct: 314 NQVSDRFDAMDNPSVFPRIGGGAGNGSPSTQ 344


>gi|304314734|ref|YP_003849881.1| ATPase [Methanothermobacter marburgensis str. Marburg]
 gi|302588193|gb|ADL58568.1| predicted ATPase [Methanothermobacter marburgensis str. Marburg]
          Length = 231

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 2/84 (2%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  + SG  GLD  +G G  P+  +  +YGP   GK+  +    A   + G  C ++  +
Sbjct: 2   IVRIPSGIRGLDELIGGGAIPENTVTLVYGPPKVGKSIFSYGFTAGGAERGEPCLYISTD 61

Query: 105 HALD--SIYARKLGVDLKNLLISQ 126
           + L       + LG+D ++ + ++
Sbjct: 62  YGLADLKRNMQVLGMDAESYMENE 85


>gi|322369117|ref|ZP_08043683.1| putative circadian clock protein, KaiC [Haladaptatus
           paucihalophilus DX253]
 gi|320551340|gb|EFW92988.1| putative circadian clock protein, KaiC [Haladaptatus
           paucihalophilus DX253]
          Length = 491

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 61/162 (37%), Gaps = 3/162 (1%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +SSG   ++  L  GGF +G I  + GP   GKTT+    + ++   G        
Sbjct: 241 ELESISSGVPEVNQLL-HGGFERGTITILSGPTGVGKTTVGTQFMKEAAGRGERSVMYMF 299

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E  L++   R   +++    + +  +             +     +  D     T    I
Sbjct: 300 EETLETFRERSENINIPVRRMEEQGSLSVEEMKPLDCSATEFAHRVRTDVEENDTSIVMI 359

Query: 164 EGDMGE--SLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           +G  G   SL     R++ + L  L   +      ++ ++++
Sbjct: 360 DGIDGYKLSLRDDDDRVLVRKLHTLCRYLKNMGITVILVDEI 401



 Score = 50.2 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 90/260 (34%), Gaps = 16/260 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G+ GLD  L  GGF   R   + G   +GKT L +  +    ++  T  FV+ E + 
Sbjct: 9   ISTGTPGLDEIL-RGGFIAERSYLLRGDPGTGKTILGMKYLTAGVESDETVLFVNLEESE 67

Query: 108 DSIYARK--LGVDLKNLLI------SQPDTGEQALEI-TDMLVRSGAVDIIVIDSVAALT 158
           D I      L +DL N+        S     EQ+ +I T   V    +   + + V ++ 
Sbjct: 68  DDIRDNASTLDIDLSNVHFLDLSPDSDVFVDEQSYDIFTPSEVEQEPLTQAITERVESID 127

Query: 159 PRAEIEGDMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
           P       +              + +      +      ++F +Q   +          T
Sbjct: 128 PDRVFIDPLTRLRHLTSDEYQFRKQVIAFMHYLKEQGATVLFTSQHSDESSDD-DLQYMT 186

Query: 218 TGGNALKFYSSVR---LDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY-G 273
            G   L+  +  R   +   R  S+ + +           V  ++       EF++    
Sbjct: 187 DGTIELEHSAYGRTISVPKFRGSSVNEGNHAMRITDGGIAVFPELNPANHSGEFELESIS 246

Query: 274 EGISFFGELIDLGVKASIVD 293
            G+    +L+  G +   + 
Sbjct: 247 SGVPEVNQLLHGGFERGTIT 266


>gi|294146512|ref|YP_003559178.1| circadian clock protein KaiC [Sphingobium japonicum UT26S]
 gi|292676929|dbj|BAI98446.1| circadian clock protein KaiC [Sphingobium japonicum UT26S]
          Length = 496

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 57/172 (33%), Gaps = 1/172 (0%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           +V+ S S  LD  LG GG  +G  V + GP  +GK+ LAL  +  +   G   A    + 
Sbjct: 248 DVLKSESTELDALLG-GGIERGSSVLVLGPAGTGKSLLALTFVTAAVARGEKAAIFVFDE 306

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
            +  ++ R LG+ +    ++              L        +             I+ 
Sbjct: 307 EMGLLFNRALGLGIDMRAMADSGDLIVEQVDAAELSPGEFSQRVRNCVERHGVRTVVIDS 366

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
             G      +   +   + +L   ++R              +G M    + T
Sbjct: 367 LNGYQSAMPEENALVLHMHELLQYLNRQGATTFLTVAQHGLVGDMKTPVDVT 418



 Score = 41.4 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 6/77 (7%)

Query: 45  IEVVSS-----GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99
           +E  S+     G  GLD  L  GG  +GR+  + G   +GKTT+A   + +  + G  C 
Sbjct: 1   METYSTKQALAGVDGLDDILS-GGLTRGRVFLLEGSPGTGKTTIATQFLIEGARRGERCL 59

Query: 100 FVDAEHALDSIYARKLG 116
           ++      + +      
Sbjct: 60  YITLSETEEEMRESAAS 76


>gi|289668761|ref|ZP_06489836.1| hypothetical protein XcampmN_09761 [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 505

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +++GS GLD  L  GG P  R+  + G   SGKTTLAL  +      G +C +V     
Sbjct: 11  RITTGSTGLDTIL-RGGLPPNRLYLLEGQPGSGKTTLALQFLLDGAAKGESCLYVTLSET 69

Query: 107 LDSIYARKLGVDLK 120
           +D +       +  
Sbjct: 70  IDELTEVAASHNWS 83



 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 78/211 (36%), Gaps = 9/211 (4%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E V SG   +D  L  GG  +G    + GP  +GKT LAL  +  + + G  C  ++ + 
Sbjct: 253 EPVPSGVKRIDALL-HGGPLRGTSTLLTGPAGAGKTNLALQYLVAACERGEHCCVLEFDE 311

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
              ++  R  G+ +            +  ++    +  G     V DSV     R  +  
Sbjct: 312 RTGTLLKRAEGLGMDLRKYLD-LGLLELHQMDPAELTPGEFAWTVRDSVEERGCRILVID 370

Query: 166 DMGESLPGMQAR-LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
            +   L  M     +   + +L S +++S      IN        + GS  T++  N   
Sbjct: 371 SLNGYLSSMPQEKQLMLQMHELLSYLNQSGVTTFLIN----PQQGLVGSMATSSSLNVSY 426

Query: 225 FYSSVRL--DIRRVGSIKDKDSITGNQTRVK 253
              +V L       G I+   S+  N++   
Sbjct: 427 MADTVILLRFFEAKGRIRKALSVIKNRSGAH 457


>gi|289661806|ref|ZP_06483387.1| hypothetical protein XcampvN_01569 [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 505

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +++GS GLD  L  GG P  R+  + G   SGKTTLAL  +      G +C +V     
Sbjct: 11  RITTGSTGLDTIL-RGGLPPNRLYLLEGQPGSGKTTLALQFLLDGAAKGESCLYVTLSET 69

Query: 107 LDSIYARKLGVDLK 120
           +D +       +  
Sbjct: 70  IDELTEVAASHNWS 83



 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 51/213 (23%), Positives = 82/213 (38%), Gaps = 13/213 (6%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VSSG   +D  L  GG  +G    + GP  +GKT LAL  +  + + G  C  ++ + 
Sbjct: 253 EPVSSGVERIDALL-HGGPLRGTSTLLTGPAGAGKTNLALQYVVAACERGEHCCVLEFDE 311

Query: 106 ALDS--IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
              +    A  LG+DL+  L S      Q   +    +  G     V DSV     R  +
Sbjct: 312 RTGTLLKRAEGLGMDLRKYLDSGLLELHQ---MDPAELTPGEFAWTVRDSVEERGCRILV 368

Query: 164 EGDMGESLPGMQAR-LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
              +   L  M     +   + +L S +++S      IN        + GS  T++  N 
Sbjct: 369 IDSLNGYLSSMPQEKQLMLQMHELLSYLNQSGVTTFLIN----PQQGLVGSMATSSSLNV 424

Query: 223 LKFYSSVRL--DIRRVGSIKDKDSITGNQTRVK 253
                +V L       G I+   S+  N++   
Sbjct: 425 SYMADTVILLRFFEAKGRIRKALSVIKNRSGAH 457


>gi|213402507|ref|XP_002172026.1| DNA repair and recombination protein radA [Schizosaccharomyces
           japonicus yFS275]
 gi|212000073|gb|EEB05733.1| DNA repair and recombination protein radA [Schizosaccharomyces
           japonicus yFS275]
          Length = 358

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 62/202 (30%), Gaps = 33/202 (16%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---GGT--- 97
                ++G   +D AL  GG     I EI G   SGK+   +      Q     GG    
Sbjct: 72  ETHFFTTGDTEIDKAL-HGGIALDHITEISGESGSGKSQFCIQLCLTVQLPKSVGGLDRA 130

Query: 98  CAFVDAEHALDSIYARKL--------------------GVDLKNLLISQPDTGEQALEIT 137
             F+  E  L++    +L                    G  +  +L    ++ E  +E  
Sbjct: 131 AVFISTESGLETRRLFQLAKFLSLQYPNDDLSYLSRHPGDRVYTILCPDLESQEHIIEYQ 190

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEI------EGDMGESLPGMQARLMSQALRKLTSSIS 191
             ++       +++    A   RAE+                 +   +++    L     
Sbjct: 191 LPILMQRVNIGLIVLDSVAANYRAELRYSRNHPNASSLGNIATRGNQLAKLASNLRELAH 250

Query: 192 RSKCILVFINQMRMKIGVMFGS 213
           +    +V  NQ+  ++   +  
Sbjct: 251 KHNAAVVIANQVSDRVSRSYDQ 272


>gi|83766628|dbj|BAE56768.1| unnamed protein product [Aspergillus oryzae]
          Length = 610

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 73/211 (34%), Gaps = 31/211 (14%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-----KTGGTCAF 100
             +S+    LD  LG GG P G + E+ G   SGKT   L  +   Q       G    +
Sbjct: 149 SAISTLDTALDELLG-GGIPTGYVTEVTGESGSGKTQFLLSLLLAVQLPSPKGLGKNAVY 207

Query: 101 VDAEHALDSIYARKL---GVDLKNLLISQPDTGEQALEI---------------TDMLVR 142
           +  E  L +    +L      L  L   +  T E  L I                 + ++
Sbjct: 208 ISTEAPLSTPRLSQLINSNPYLSTLPRDRAPTLENILSINAMDLESQDHILNYQLPVAIQ 267

Query: 143 SGAVDIIVIDSVAALTPRAEIEGD--MGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
              V ++VIDS+ +   RAE      +G S    +   + Q    L +   +    +V  
Sbjct: 268 RYNVGLVVIDSITS-NYRAEHTSHNILGLSTRSGELTKLGQM---LRNLAVQEDIAIVVA 323

Query: 201 NQMRMKIGVMFGSPETT-TGGNALKFYSSVR 230
           NQ+  +   M         GG A     S +
Sbjct: 324 NQVSDRFDAMDNPSVFPRIGGGAGNGSPSTQ 354


>gi|290476505|ref|YP_003469410.1| putative ATP-dependent protease, with nucleoside triP hydrolase and
           multiheme cytochrome domains, DNA repair protein
           [Xenorhabdus bovienii SS-2004]
 gi|289175843|emb|CBJ82646.1| putative ATP-dependent protease, with nucleoside triP hydrolase and
           multiheme cytochrome domains, DNA repair protein
           [Xenorhabdus bovienii SS-2004]
          Length = 460

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 11/161 (6%)

Query: 28  GKGAIMQLGSQGSI-FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           G+ +I ++     I  E +   S+G    D  LG GG   G  + I G   +GK+TL L 
Sbjct: 55  GEVSISKVQKLAEISLEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQ 113

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
            + Q  +      +V  E +L  +  R  +LG+    L +    + EQ   I +      
Sbjct: 114 IMCQLSEQ-MKTLYVTGEESLQQVAMRAHRLGLPTDKLNMLSETSIEQICLIAE----QE 168

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
              ++VIDS+  +   A+I+   G  +     A  +++  +
Sbjct: 169 QPKLMVIDSIQVMH-MADIQSSPGSVAQVRETAAYLTRFAK 208


>gi|260771487|ref|ZP_05880412.1| DNA repair protein RadA [Vibrio furnissii CIP 102972]
 gi|260613613|gb|EEX38807.1| DNA repair protein RadA [Vibrio furnissii CIP 102972]
 gi|315181072|gb|ADT87986.1| DNA repair protein RadA [Vibrio furnissii NCTC 11218]
          Length = 459

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 64/170 (37%), Gaps = 16/170 (9%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   SSG   LD  LG GG   G  + I G   +GK+TL L T+           +V
Sbjct: 70  LQEVPRFSSGFKELDRVLG-GGVVPGAAILIGGSPGAGKSTLLLQTMCLLSSQ-MKTLYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+  ++L +      ++  +I +         I+VIDS+  +  
Sbjct: 128 TGEESLQQVAMRASRLGLPKEHLQMLSETNVDRICQIAEK----EQPRIMVIDSIQVMHV 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
                     +     A  +++          +   + VFI     K G 
Sbjct: 184 ADVQSSPGSVAQVREAATALTRYA--------KQNNVAVFIVGHVTKDGT 225


>gi|83945270|ref|ZP_00957619.1| DNA repair protein RadA [Oceanicaulis alexandrii HTCC2633]
 gi|83851440|gb|EAP89296.1| DNA repair protein RadA [Oceanicaulis alexandrii HTCC2633]
          Length = 456

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 66/160 (41%), Gaps = 3/160 (1%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           + ++L   GS  E  +   +G   LD   G GG   G  + + G    GK+TL L  +AQ
Sbjct: 57  SRLELVDLGSATEDPKRFETGLRELDRVAG-GGLVPGSAILVGGDPGIGKSTLLLQAVAQ 115

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
             K G    +V  E A D +  R   + L +  ++     E +LE+    ++    DI V
Sbjct: 116 LAKAGAKSVYVSGEEAADQVRRRARRLGLADAPVALAA--ETSLEVILDGLKKETPDIAV 173

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           IDSV  L            +     A+ + +  +K  + I
Sbjct: 174 IDSVQTLWSDQLAAAPGTVAQVRACAQELVRFAKKKNTII 213


>gi|238497916|ref|XP_002380193.1| DNA repair protein (Rad57), putative [Aspergillus flavus NRRL3357]
 gi|220693467|gb|EED49812.1| DNA repair protein (Rad57), putative [Aspergillus flavus NRRL3357]
          Length = 585

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 73/211 (34%), Gaps = 31/211 (14%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-----KTGGTCAF 100
             +S+    LD  LG GG P G + E+ G   SGKT   L  +   Q       G    +
Sbjct: 124 SAISTLDTALDELLG-GGIPTGYVTEVTGESGSGKTQFLLSLLLAVQLPSPKGLGKNAVY 182

Query: 101 VDAEHALDSIYARKL---GVDLKNLLISQPDTGEQALEI---------------TDMLVR 142
           +  E  L +    +L      L  L   +  T E  L I                 + ++
Sbjct: 183 ISTEAPLSTPRLSQLIDSNPYLSTLPRDRAPTLENILSINAMDLESQDHILNYQLPVAIQ 242

Query: 143 SGAVDIIVIDSVAALTPRAEIEGD--MGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
              V ++VIDS+ +   RAE      +G S    +   + Q    L +   +    +V  
Sbjct: 243 RYNVGLVVIDSITS-NYRAEHTSHNILGLSTRSGELTKLGQM---LRNLAVQEDIAIVVA 298

Query: 201 NQMRMKIGVMFGSPETT-TGGNALKFYSSVR 230
           NQ+  +   M         GG A     S +
Sbjct: 299 NQVSDRFDAMDNPSVFPRIGGGAGNGSPSTQ 329


>gi|289620351|emb|CBI53209.1| putative RAD57 protein [Sordaria macrospora]
          Length = 481

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 66/213 (30%), Gaps = 42/213 (19%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-----KTGGTCAF 100
           + +S+    LD ALG GG P G + EI G   +GKT   L  +   Q       G    +
Sbjct: 108 QTISTLDPDLDRALGGGGIPAGYVTEITGESGAGKTQFLLTLLLAVQLPPPHGLGRPALY 167

Query: 101 VDAEHALDSIYARKL-------------------GVDLKNLLISQPDTGEQALEITDMLV 141
           +  E  L +    ++                      L N++ +     E    I    V
Sbjct: 168 ISTEAPLSTRRLAQMLTTNPFFKGLDETDGASSVRPSLDNIISTVTPDLESQDHILTYQV 227

Query: 142 R---SGAVDIIVIDSVAALTPRAEIEGDMGE---------------SLPGMQARLMSQAL 183
                     +++    A   RAE E    +               S  G +   + +  
Sbjct: 228 PVEIERRNIGLLVLDSVAANYRAEFERSSKKDATTSSSTPGPGARSSNMGARTAELVRLG 287

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPET 216
            +L     +    +V  NQ+  + G     P T
Sbjct: 288 MQLRDLAQKYNLAVVVSNQVADRFGSKMPEPIT 320


>gi|193215382|ref|YP_001996581.1| DNA repair protein RadA [Chloroherpeton thalassium ATCC 35110]
 gi|193088859|gb|ACF14134.1| DNA repair protein RadA [Chloroherpeton thalassium ATCC 35110]
          Length = 459

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 93/257 (36%), Gaps = 20/257 (7%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +S+    LD  LG GG     +V + G    GK+TL L   A     G +  ++ AE 
Sbjct: 72  ERLSTRIEELDRVLG-GGLMTASVVLVGGEPGIGKSTLMLQLAA--NLVGKSILYISAEE 128

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +L  I  R   +++++         E  LE     V +   D++++DS+  +        
Sbjct: 129 SLHQIRNRAYRMNIRS--EDILLVSETQLENILDTVAAEKPDVLIVDSIQTIFS------ 180

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
            +G          + +   KL     R    +  I  +  +  +             L+F
Sbjct: 181 -IGFESSPGTVTQVRECTSKLMHLAKREGITVFIIGHITKEGTIAGPKVLEHIVDTVLQF 239

Query: 226 YSSVRLDIRRVGSIKDK---DSITGNQTRVKVVKNKMASPFKQVEFDIMYG-EGI----S 277
                   R + ++K++    +  G     ++  +++ +P +    +  +G  G     S
Sbjct: 240 EGDNHYRYRILRALKNRFGSTNEIGVFEMTEMGLSEVTNPSEAFLAERSFGVSGSCVCAS 299

Query: 278 FFGELIDLGVKASIVDK 294
             G    L    ++V K
Sbjct: 300 LEGARPLLVEIQALVSK 316


>gi|330501782|ref|YP_004378651.1| DNA repair protein RadA [Pseudomonas mendocina NK-01]
 gi|328916068|gb|AEB56899.1| DNA repair protein RadA [Pseudomonas mendocina NK-01]
          Length = 452

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 54/144 (37%), Gaps = 4/144 (2%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I   S+ S  LD  LG GG   G +V I G    GK+T+ L T+    +      +V
Sbjct: 64  VEEIPRFSTASGELDRVLG-GGLVDGSVVLIGGDPGIGKSTILLQTLCNIAQRFP-ALYV 121

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
             E +   +  R   +DL           E  +E      R     ++VIDS+  +    
Sbjct: 122 TGEESQQQVAMRARRLDLPQ--DKLKVMTETCIESIIATARQEKPKVMVIDSIQTIFTEQ 179

Query: 162 EIEGDMGESLPGMQARLMSQALRK 185
                 G +     A L+ +  ++
Sbjct: 180 LQSAPGGVAQVRESAALLVRFAKQ 203


>gi|296215965|ref|XP_002754356.1| PREDICTED: DNA repair protein XRCC3-like [Callithrix jacchus]
          Length = 346

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 40/109 (36%), Gaps = 7/109 (6%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---GGT---CA 99
           + +S G   LD  L  GG P   I E+ G  S+GKT LAL      Q     GG      
Sbjct: 80  QRLSLGCPVLDALL-RGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLESGAV 138

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           ++  E A      ++L      L    P    Q L     +    A D+
Sbjct: 139 YICTEDAFPHKRLQQLMAHQPRLRTDVPGELLQRLPSGSQIFIEHAADV 187


>gi|331268386|ref|YP_004394878.1| DNA repair protein RadA [Clostridium botulinum BKT015925]
 gi|329124936|gb|AEB74881.1| DNA repair protein RadA [Clostridium botulinum BKT015925]
          Length = 453

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 62/160 (38%), Gaps = 11/160 (6%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G + L+  LG GG  KG +  I G    GK+T+ L T        G   +V  E + + 
Sbjct: 72  TGIIELNRVLG-GGLVKGSLTLISGAPGIGKSTILLQTANNIASKVGKVLYVSGEESGEQ 130

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           I  R  G  + N+        E  LE+ +  +       ++IDS+  L   +        
Sbjct: 131 IKIR--GDRIGNISSELYILSETNLELIEEHINFMEPVFVIIDSIQTLFKPSIESAPGSV 188

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           S     +  + +        I+++K I +FI     K G 
Sbjct: 189 SQVRECSNELMR--------IAKTKNIPLFIVAHVTKQGE 220


>gi|291550517|emb|CBL26779.1| DNA repair protein RadA [Ruminococcus torques L2-14]
          Length = 454

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 60/184 (32%), Gaps = 19/184 (10%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   LD  LG GG   G +V + G    GK+TL L    +  K      ++  E +   
Sbjct: 75  TGIKELDRVLG-GGIVPGSLVLVGGDPGIGKSTLLLQVCQRMAKQQKI-LYISGEESQTQ 132

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           I  R     +     +     E  L I   ++     ++++IDS+  +            
Sbjct: 133 IKLRA--NRMGEFSQNLLLLCETNLGIIRSVIEKEKPELVIIDSIQTMYSEDVNSAPGSV 190

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           S       +  Q  + L        CI +FI     K G +        G   L+     
Sbjct: 191 SQVRESTNVFMQLAKGL--------CIPIFIVGHVTKEGTV-------AGPRVLEHMVDT 235

Query: 230 RLDI 233
            L  
Sbjct: 236 VLYF 239


>gi|39978201|ref|XP_370488.1| hypothetical protein MGG_06985 [Magnaporthe oryzae 70-15]
 gi|145013439|gb|EDJ98080.1| hypothetical protein MGG_06985 [Magnaporthe oryzae 70-15]
          Length = 548

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 70/220 (31%), Gaps = 28/220 (12%)

Query: 22  QIQRVYGKGAIMQLGSQ-----GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           Q+        I  LGSQ       +      +S+    LD ALG GG P G + EI G  
Sbjct: 106 QLTGAVTTTTINHLGSQLRHNHAQLAARWSTISTLDPELDAALG-GGIPTGYVTEITGES 164

Query: 77  SSGKTTLALHTIAQSQ-----KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT-- 129
            +GKT   L  +   Q       G    ++  E AL +    ++      LL + P    
Sbjct: 165 GAGKTQFLLSLLLAVQLPPPHGLGRKAMYIPTEAALSTRRVAQMLAANPLLLSASPRPSL 224

Query: 130 --------------GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL-PGM 174
                          +  L     L  +     ++I    A   RAE +     S     
Sbjct: 225 DSILSLQPLGDIEAQDHILSFQVPLEAARRNVGLIILDSVAANFRAEYDAAGSRSTGLAA 284

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           ++  + +   +L +        +V  NQ+  +        
Sbjct: 285 RSAELVRLGMQLRNLARSLNLAVVVANQVADRFESKIPMR 324


>gi|281211390|gb|EFA85555.1| putative DNA repair protein [Polysphondylium pallidum PN500]
          Length = 398

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 93/292 (31%), Gaps = 71/292 (24%)

Query: 31  AIMQLGSQGS----IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           +I  L    +    + E  + + S  + LD  LG GG P  ++ E  G    GKT ++L 
Sbjct: 13  SISSLSDYKTGLDLLNEHSQHIISFCMELDQKLG-GGIPLRKMTEFCGVPGVGKTQMSLQ 71

Query: 87  TIAQSQKT------GGTCAFVDAEHALDSIYARKLGV----------------------- 117
                          G   ++D E +      R++ +                       
Sbjct: 72  LAVNCCLPVEFGGVAGKTIYIDTEGSFSVTRLRQMALALCEHLELISKDNSNNNNNNETT 131

Query: 118 ---------------------DLKNLLISQPDTGEQALEITDM----LVRSGAVDIIVID 152
                                 L+++   +     + L + +M    L     V +IVID
Sbjct: 132 GGGDGVGDGRRKILESFTANHILESIYYYRVHHYLEQLALVNMLPSILQARSDVRLIVID 191

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           S+     R              + R+++Q    L S   +    +V  N +  K+     
Sbjct: 192 SITCPFRRHF-------QDIAQRTRVLTQLATNLLSIAQQYNVAVVLTNHVSTKLNNKGQ 244

Query: 213 SPETTTGGNALKFYSSVRLDI-----RRVGSIKDKDSITGNQTRVKVVKNKM 259
           S    + G+AL    + R+ +     +R   +       G +++  + ++ +
Sbjct: 245 SQLMPSFGDALGHICTNRIFLYYKQNKRFCYLYKSLPFQGLESQFNIDEHGI 296


>gi|262044967|ref|ZP_06018009.1| DNA repair protein RadA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330006933|ref|ZP_08305802.1| DNA repair protein RadA [Klebsiella sp. MS 92-3]
 gi|259037694|gb|EEW38923.1| DNA repair protein RadA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328535620|gb|EGF62072.1| DNA repair protein RadA [Klebsiella sp. MS 92-3]
          Length = 424

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 10/155 (6%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 27  VQKLSDIS--LEALPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 83

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
              G    +V  E +L  +  R  +LG+   NL +    + EQ  +I           ++
Sbjct: 84  A-EGMKTLYVTGEESLQQVAMRAHRLGLPTANLNMLSETSIEQICQIA----DEEKPQLM 138

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           VIDS+  +            +     A  +++  +
Sbjct: 139 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAK 173


>gi|152973308|ref|YP_001338454.1| DNA repair protein RadA [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|206580401|ref|YP_002240561.1| DNA repair protein RadA [Klebsiella pneumoniae 342]
 gi|238892975|ref|YP_002917709.1| DNA repair protein RadA [Klebsiella pneumoniae NTUH-K2044]
 gi|288937257|ref|YP_003441316.1| DNA repair protein RadA [Klebsiella variicola At-22]
 gi|290512661|ref|ZP_06552027.1| DNA repair protein RadA [Klebsiella sp. 1_1_55]
 gi|150958157|gb|ABR80187.1| probable ATP-dependent protease [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206569459|gb|ACI11235.1| DNA repair protein RadA [Klebsiella pneumoniae 342]
 gi|238545291|dbj|BAH61642.1| probable ATP-dependent protease [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|288891966|gb|ADC60284.1| DNA repair protein RadA [Klebsiella variicola At-22]
 gi|289775002|gb|EFD83004.1| DNA repair protein RadA [Klebsiella sp. 1_1_55]
          Length = 460

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 10/155 (6%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 63  VQKLSDIS--LEALPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
              G    +V  E +L  +  R  +LG+   NL +    + EQ  +I           ++
Sbjct: 120 A-EGMKTLYVTGEESLQQVAMRAHRLGLPTANLNMLSETSIEQICQIA----DEEKPQLM 174

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           VIDS+  +            +     A  +++  +
Sbjct: 175 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAK 209


>gi|269966885|ref|ZP_06180958.1| DNA repair protein RadA [Vibrio alginolyticus 40B]
 gi|269828552|gb|EEZ82813.1| DNA repair protein RadA [Vibrio alginolyticus 40B]
          Length = 459

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 16/170 (9%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   +SG   LD  LG GG   G  + I G   +GK+TL L T+           +V
Sbjct: 70  LQEVPRFTSGFKELDRVLG-GGVVPGAAILIGGNPGAGKSTLLLQTMCSLSAQ-MPTLYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+   +L +      ++  +I +         I+VIDS+  +  
Sbjct: 128 TGEESLQQVAMRASRLGLPKDHLKMLSETNVDKICQIAEK----EQPRIMVIDSIQVMHV 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
                     +     A  +++          +   + VFI     K G 
Sbjct: 184 SDVQSSPGSVAQVRESATALTRYA--------KQNNVAVFIVGHVTKDGT 225


>gi|209946360|gb|ACI97411.1| spindle B [Drosophila melanogaster]
          Length = 341

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 77/238 (32%), Gaps = 25/238 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCA 99
             VS G   LD   G GG     I E+ G    GKT L L      Q        G   A
Sbjct: 86  SRVSFGCSALDRCTG-GGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVA 144

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           ++  E +  +    ++    +             + + +  + +  +   VI+ +  L  
Sbjct: 145 YICTESSFPARRLLQMSKACEKRHPEMELNFLGNIFV-ENHIEAEPLLACVINRIPRLMQ 203

Query: 160 RAEIEGDMGESLPG---------MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +  I   + +S+            +AR M +    L S   +  C +V +NQ+  + G  
Sbjct: 204 QHGIGLIIIDSVAAIFRLYNDYLERARHMRRLADALLSYADKYNCAVVCVNQVATRDG-- 261

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
               E    G          L + RV     K    G+Q         + SP    +F
Sbjct: 262 --QDEIPCLGLQWAHLGRTXLRVSRVP----KQHRMGDQLITVRKLEILYSPETPNDF 313


>gi|254229325|ref|ZP_04922742.1| DNA repair protein RadA [Vibrio sp. Ex25]
 gi|151938133|gb|EDN56974.1| DNA repair protein RadA [Vibrio sp. Ex25]
          Length = 518

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 16/170 (9%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   +SG   LD  LG GG   G  + I G   +GK+TL L T+           +V
Sbjct: 129 LQEVPRFTSGFKELDRVLG-GGVVPGAAILIGGNPGAGKSTLLLQTMCSLSAQ-MPTLYV 186

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+   +L +      ++  +I +         I+VIDS+  +  
Sbjct: 187 TGEESLQQVAMRASRLGLPKDHLKMLSETNVDKICQIAEK----EQPRIMVIDSIQVMHV 242

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
                     +     A  +++          +   + VFI     K G 
Sbjct: 243 SDVQSSPGSVAQVRESATALTRYA--------KQNNVAVFIVGHVTKDGT 284


>gi|91228296|ref|ZP_01262232.1| DNA repair protein RadA [Vibrio alginolyticus 12G01]
 gi|91188173|gb|EAS74475.1| DNA repair protein RadA [Vibrio alginolyticus 12G01]
          Length = 371

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 16/170 (9%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   +SG   LD  LG GG   G  + I G   +GK+TL L T+           +V
Sbjct: 70  LQEVPRFTSGFKELDRVLG-GGVVPGAAILIGGNPGAGKSTLLLQTMCSLSAQ-MPTLYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+   +L +      ++  +I +         I+VIDS+  +  
Sbjct: 128 TGEESLQQVAMRASRLGLPKDHLKMLSETNVDKICQIAEK----EQPRIMVIDSIQVMHV 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
                     +     A  +++          +   + VFI     K G 
Sbjct: 184 SDVQSSPGSVAQVRESATALTRYA--------KQNNVAVFIVGHVTKDGT 225


>gi|262393409|ref|YP_003285263.1| DNA repair protein RadA [Vibrio sp. Ex25]
 gi|262337003|gb|ACY50798.1| DNA repair protein RadA [Vibrio sp. Ex25]
          Length = 459

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 16/170 (9%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   +SG   LD  LG GG   G  + I G   +GK+TL L T+           +V
Sbjct: 70  LQEVPRFTSGFKELDRVLG-GGVVPGAAILIGGNPGAGKSTLLLQTMCSLSAQ-MPTLYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+   +L +      ++  +I +         I+VIDS+  +  
Sbjct: 128 TGEESLQQVAMRASRLGLPKDHLKMLSETNVDKICQIAEK----EQPRIMVIDSIQVMHV 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
                     +     A  +++          +   + VFI     K G 
Sbjct: 184 SDVQSSPGSVAQVRESATALTRYA--------KQNNVAVFIVGHVTKDGT 225


>gi|291405699|ref|XP_002719136.1| PREDICTED: RAD51 homolog C [Oryctolagus cuniculus]
          Length = 473

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 68/224 (30%), Gaps = 45/224 (20%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           + +    +D  LG GG P  +  EI G    GKT L +      Q         G   F+
Sbjct: 91  IITFCSAVDNILG-GGIPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFI 149

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQ----------------------------- 132
           D E +       +L       L     T  +                             
Sbjct: 150 DTEGSFMVDRVVELATACIQHLHLIAGTHMEEEQKALEEFTLENILSHIYYFRCCDYTEL 209

Query: 133 --ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
              + +    +   +   +VI    A   R +++         ++ RL++   +++ S  
Sbjct: 210 LAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDD------LSLRTRLLNGLAQQMISLA 263

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
           +  +  ++  NQM  KI           G +     +++RL   
Sbjct: 264 NNHRLAVILTNQMTTKIEKDQALLVPALGES-WGHAATIRLVFH 306


>gi|254693229|ref|ZP_05155057.1| DNA repair protein RadA [Brucella abortus bv. 3 str. Tulya]
 gi|261213472|ref|ZP_05927753.1| DNA repair protein RadA [Brucella abortus bv. 3 str. Tulya]
 gi|260915079|gb|EEX81940.1| DNA repair protein RadA [Brucella abortus bv. 3 str. Tulya]
          Length = 467

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 75/214 (35%), Gaps = 6/214 (2%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG  + L S     E    + SG   LD   G GGF +G  + I G    GK+TL     
Sbjct: 54  KGRAVALTSLSGEIEDAPRIISGISELDRVTG-GGFVRGSALLIGGDPGIGKSTLLTQAA 112

Query: 89  AQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALE-ITDMLVRSGA 145
           A     G    +V  E A+  I   A++LGV    + ++     E  +  I+     S  
Sbjct: 113 AALSNRGHRIVYVSGEEAVAQIRLRAQRLGVAASAVELAAETNVEDIIATISSDNSGSKR 172

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
            D+++IDS+  L            +     A+ M +   K T +       +    Q+  
Sbjct: 173 PDLVIIDSIQTLWTDMAGSAPGTVTQVRSSAQAMIRYA-KQTGAAVVLVGHVTKDGQIAG 231

Query: 206 -KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
            ++            G     Y  +R    R G 
Sbjct: 232 PRVVEHMVDGVLYFEGEGGHHYRILRTVKNRFGP 265


>gi|188583778|ref|YP_001927223.1| circadian clock protein KaiC [Methylobacterium populi BJ001]
 gi|179347276|gb|ACB82688.1| putative circadian clock protein, KaiC [Methylobacterium populi
           BJ001]
          Length = 567

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           V+S+G  GLD  L  GGF +G  + I G   +GKT ++   I  +   G  C     E +
Sbjct: 257 VISTGIPGLDAMLEPGGFHRGTSILISGEAGTGKTMISSSMIEAACARGERCMAFVFEES 316

Query: 107 LDSIYARKLGVDLK----------NLLISQPDTGEQALEITDML--VRSGAVDIIVIDSV 154
            D I      + L               ++P      + +  M   +      ++VID +
Sbjct: 317 GDQIIRNARSIGLDLARHVESGLLRFEAARPSLYGLEMHLARMHRDIDRFEPTLVVIDPL 376

Query: 155 AALT-PRAEIEGDMGESLPGMQARLMSQALRKLT--------SSISRSKCILVFINQMRM 205
           +AL  P AE++  M   +  +++R ++     L         S+I  S  +  ++  + +
Sbjct: 377 SALRGPPAELQATMLRMIDMLKSRGITAVFTSLREDGEIDHDSAIGVSSLMDAWVKLLNV 436

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           +                ++  + VR        I   D+  G
Sbjct: 437 EANGERSRTLYVIKARGMRHSNQVREFTMSGEGIALIDAYIG 478



 Score = 38.7 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 80/264 (30%), Gaps = 23/264 (8%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT- 94
            S  +    +  V++G  G D A+  GG PKGR   + G    GKT  A   +       
Sbjct: 6   ASPSTGAPALPKVATGIDGFD-AITFGGLPKGRPSLVCGAAGCGKTLFATTFLVNGATRF 64

Query: 95  GGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI---- 148
                F+  E   + + A    LG DL  L+       +        +  +G  D+    
Sbjct: 65  DEPGVFMSFEERAEDLVANVASLGYDLDALVAQGKLAIDHVRVERSEIEETGEYDLEGLF 124

Query: 149 ----IVIDSVAA----LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
                 +DS+ A    L     +     +               K      R    ++  
Sbjct: 125 IRLGFAVDSIGAKRVVLDTIETLFAGFSDETVLRAELRRLFGWIK-----DRGLTAIITG 179

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
            +   ++         +     L      ++  RR+  +K + S  G      ++  +  
Sbjct: 180 ERGDGQLTRQGMEEYVSDCVVLLDNRVEDQITTRRLRVVKYRGSAHGTNEYPFLIDAEGI 239

Query: 261 S--PFKQVEFDIMYGEGISFFGEL 282
           S  P    + D    EG+   G  
Sbjct: 240 SVLPVTSADLDYRIAEGVISTGIP 263


>gi|213966765|ref|ZP_03394916.1| DNA repair protein RadA [Pseudomonas syringae pv. tomato T1]
 gi|237801452|ref|ZP_04589913.1| DNA repair protein RadA [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|301383273|ref|ZP_07231691.1| DNA repair protein RadA [Pseudomonas syringae pv. tomato Max13]
 gi|302062488|ref|ZP_07254029.1| DNA repair protein RadA [Pseudomonas syringae pv. tomato K40]
 gi|302133470|ref|ZP_07259460.1| DNA repair protein RadA [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|115265601|dbj|BAF32863.1| DNA repair protein [Pseudomonas syringae pv. actinidiae]
 gi|213928615|gb|EEB62159.1| DNA repair protein RadA [Pseudomonas syringae pv. tomato T1]
 gi|330873482|gb|EGH07631.1| DNA repair protein RadA [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
 gi|330961625|gb|EGH61885.1| DNA repair protein RadA [Pseudomonas syringae pv. maculicola str.
           ES4326]
 gi|330966732|gb|EGH66992.1| DNA repair protein RadA [Pseudomonas syringae pv. actinidiae str.
           M302091]
 gi|331024311|gb|EGI04368.1| DNA repair protein RadA [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 455

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 58/146 (39%), Gaps = 8/146 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I   S+ S  LD  LG GG   G +V I G    GK+T+ L T+    +      +V
Sbjct: 67  VEEIPRFSTNSAELDRVLG-GGLVDGSVVLIGGDPGIGKSTILLQTLCNIAQR-MPALYV 124

Query: 102 DAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +   +   AR+LG+    L +      E  +E      +     ++VIDS+  +  
Sbjct: 125 TGEESQQQVAMRARRLGLPQDKLRVMT----ETCIETIIATAKVEKPKVMVIDSIQTIFT 180

Query: 160 RAEIEGDMGESLPGMQARLMSQALRK 185
                   G S     A L+ +  ++
Sbjct: 181 EQLQSAPGGVSQVRESAALLVRYAKQ 206


>gi|28871772|ref|NP_794391.1| DNA repair protein RadA [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28855024|gb|AAO58086.1| DNA repair protein RadA [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|331018912|gb|EGH98968.1| DNA repair protein RadA [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 455

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 58/146 (39%), Gaps = 8/146 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I   S+ S  LD  LG GG   G +V I G    GK+T+ L T+    +      +V
Sbjct: 67  VEEIPRFSTNSAELDRVLG-GGLVDGSVVLIGGDPGIGKSTILLQTLCNIAQR-MPALYV 124

Query: 102 DAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +   +   AR+LG+    L +      E  +E      +     ++VIDS+  +  
Sbjct: 125 TGEESQQQVAMRARRLGLPQDKLRVMT----ETCIETIIATAKVEKPKVMVIDSIQTIFT 180

Query: 160 RAEIEGDMGESLPGMQARLMSQALRK 185
                   G S     A L+ +  ++
Sbjct: 181 EQLQSAPGGVSQVRESAALLVRYAKQ 206


>gi|152978752|ref|YP_001344381.1| DNA repair protein RadA [Actinobacillus succinogenes 130Z]
 gi|150840475|gb|ABR74446.1| DNA repair protein RadA [Actinobacillus succinogenes 130Z]
          Length = 459

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +     +SG   LD  LG GG   G  + I G   +GK+TL L  +        T  +V
Sbjct: 70  LQETPRFTSGFKELDRVLG-GGIVPGSAILIGGHPGAGKSTLLLQVMCGLA-ENMTALYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+    L +    + EQ   + D L       IIVIDS+  +  
Sbjct: 128 TGEESLQQVAMRANRLGLPTDTLHMLSETSVEQICRLADQLKPQ----IIVIDSIQVMHL 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     +     A  +++  +    +I  
Sbjct: 184 ADIQSSPGSVAQVRECASFLTRYAKTRQVAIIM 216


>gi|116495776|ref|YP_807510.1| DNA repair protein RadA [Lactobacillus casei ATCC 334]
 gi|116105926|gb|ABJ71068.1| DNA replication and repair protein RadA [Lactobacillus casei ATCC
           334]
          Length = 454

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 72/188 (38%), Gaps = 20/188 (10%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            V +G   L+  LG GG   G +V I G    GK+TL L    Q   TGGT  +V  E +
Sbjct: 69  RVKTGLDELNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSGQLANTGGTVLYVSGEES 127

Query: 107 LDSIYARKLGVDLKNL-LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
              I  R   + + N  +   P+T   ++E    ++     D +VIDSV  +        
Sbjct: 128 ASQIKMRAGRLGVANSGMYLYPETDMPSIE---DVINQMQPDYVVIDSVQTM-------N 177

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
               +        + +   +L   I++SK + +FI     K G +        G   L+ 
Sbjct: 178 VPEMNSAVGSVTQIREVTAELMR-IAKSKGVTIFIVGHVTKEGAI-------AGPKILEH 229

Query: 226 YSSVRLDI 233
                L  
Sbjct: 230 MVDTVLYF 237


>gi|291459188|ref|ZP_06598578.1| DNA repair protein RadA [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291418442|gb|EFE92161.1| DNA repair protein RadA [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 462

 Score = 51.0 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 84/245 (34%), Gaps = 34/245 (13%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQK 93
           LG      E  E + SG   LD  LG GG   G ++ + G    GK+TL L      S K
Sbjct: 64  LGEIPLSLE--ERLKSGFTELDRVLG-GGIVVGSLLLLGGDPGIGKSTLLLELSRNLSAK 120

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDL--KNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
            G +  +V  E +L  I  R + + +    L           +E     +     +++VI
Sbjct: 121 EGRSVLYVSGEESLRQIKMRAMRLSVGEGELRFLCETN----IENIQEAIAETRPELVVI 176

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DS+  +   A        S     A  + +          +     +F+     K G + 
Sbjct: 177 DSIQTMFTEAVSAAPGSVSQVRESAAALLRTA--------KEGGSAIFLVGHVTKDGNV- 227

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
                  G   L+      L          +   +GN   +   KN+  +  +   F++ 
Sbjct: 228 ------AGPKILEHMVDAVLYF--------EGESSGNLRILHGQKNRFGASGEIAVFEMS 273

Query: 272 YGEGI 276
            GEG+
Sbjct: 274 -GEGL 277


>gi|52426361|ref|YP_089498.1| DNA repair protein RadA [Mannheimia succiniciproducens MBEL55E]
 gi|52308413|gb|AAU38913.1| Sms protein [Mannheimia succiniciproducens MBEL55E]
          Length = 462

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +     SSG   LD  LG GG   G  + I G   +GK+TL L  +        T  +V
Sbjct: 71  LQETPRFSSGFKELDRVLG-GGIVPGSAILIGGHPGAGKSTLLLQVMCGLA-RNMTALYV 128

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+    L +    + EQ   + D L       I+VIDS+  +  
Sbjct: 129 TGEESLQQVAMRANRLGLPTDRLQMLSETSVEQICSLADQLKPQ----ILVIDSIQVMHL 184

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     +     A  +++  +    +I  
Sbjct: 185 ADIQSSPGSVAQVRECASFLTRYAKTRQVAIIM 217


>gi|145222034|ref|YP_001132712.1| DNA repair protein RadA [Mycobacterium gilvum PYR-GCK]
 gi|315446224|ref|YP_004079103.1| DNA repair protein RadA [Mycobacterium sp. Spyr1]
 gi|145214520|gb|ABP43924.1| DNA repair protein RadA [Mycobacterium gilvum PYR-GCK]
 gi|315264527|gb|ADU01269.1| DNA repair protein RadA [Mycobacterium sp. Spyr1]
          Length = 467

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 49/141 (34%), Gaps = 4/141 (2%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   LD  LG GG   G +  + G    GK+TL L    +   TG    ++  E +   
Sbjct: 75  TGISELDRVLG-GGLVPGSVTLLAGDPGVGKSTLLLEVAHRWASTGRRALYLSGEESAGQ 133

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           I  R       +  +      +  L+     + +    ++V+DSV  ++   E +G  G 
Sbjct: 134 IRLRAERTGCSHDEVYLAAESD--LQTALGHIDAVRPSLVVVDSVQTMST-TEADGVTGG 190

Query: 170 SLPGMQARLMSQALRKLTSSI 190
                          K T   
Sbjct: 191 VTQVRAVTTALTMTAKTTGVA 211


>gi|225420482|ref|ZP_03762785.1| hypothetical protein CLOSTASPAR_06827 [Clostridium asparagiforme
           DSM 15981]
 gi|225040876|gb|EEG51122.1| hypothetical protein CLOSTASPAR_06827 [Clostridium asparagiforme
           DSM 15981]
          Length = 172

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 55/140 (39%), Gaps = 8/140 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +  + +S+G   LD  LG  G   G +V + G    GK+TL L              ++
Sbjct: 39  LQEQDRISTGFKELDRVLGD-GIVNGSLVLVGGDPGIGKSTLLLQVCRHLAGAEHRVLYI 97

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  I  R  ++G    +L           L+  D  + +   +I+VIDS+  +  
Sbjct: 98  SGEESLKQIKMRANRIGQVQGDLRFLCETN----LDRIDRTIEAEKPEIVVIDSIQTMY- 152

Query: 160 RAEIEGDMGESLPGMQARLM 179
           R E+    G      ++  M
Sbjct: 153 REEVSSAPGSVSQVRESTSM 172


>gi|227834040|ref|YP_002835747.1| DNA repair protein [Corynebacterium aurimucosum ATCC 700975]
 gi|262183474|ref|ZP_06042895.1| DNA repair protein RadA [Corynebacterium aurimucosum ATCC 700975]
 gi|227455056|gb|ACP33809.1| DNA repair protein [Corynebacterium aurimucosum ATCC 700975]
          Length = 460

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 57/146 (39%), Gaps = 4/146 (2%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
             + +++G   LD  LG G  P G +V + G    GK+TL L   ++  + G T  +  A
Sbjct: 74  ATKAINTGIGELDRVLGRGIVP-GSVVLMAGEPGVGKSTLLLEVASRWAQLGRTALYATA 132

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E +   + AR        L  +     E  L++    V      ++++DSV  +   A +
Sbjct: 133 EESAGQVRARA--ERTGALHETLYLAAESNLDVVFGHVEQLKPSLLIVDSVQTMH-AAGV 189

Query: 164 EGDMGESLPGMQARLMSQALRKLTSS 189
           EG  G              L K T  
Sbjct: 190 EGVAGGVAQSRAVTAALTTLAKTTGI 215


>gi|209944558|gb|ACI96510.1| spindle D [Drosophila simulans]
          Length = 212

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 8/117 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           + +G+  LD   G GG   G +VE+ G   +GKT + L      Q         G+  F+
Sbjct: 46  ILTGNKALDTHFG-GGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFI 104

Query: 102 DAEHALDSIYARKLGVDLK-NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           D            L + L+       P+     +      VR   +D ++   +   
Sbjct: 105 DTRQDFHPDRLMDLALKLERQYAHRVPEFKAHKMLRKIHYVRCPKLDQLMATVLICH 161


>gi|197123430|ref|YP_002135381.1| non-specific serine/threonine protein kinase [Anaeromyxobacter sp.
           K]
 gi|196173279|gb|ACG74252.1| Non-specific serine/threonine protein kinase [Anaeromyxobacter sp.
           K]
          Length = 497

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G  GLD  LG GGFP+ R+  + G   +GKTTL+L  + +  + G +C ++    + + 
Sbjct: 14  TGIPGLDDVLG-GGFPRRRVHLLQGTPGAGKTTLSLQFLMEGVREGESCLYIAMSESREE 72

Query: 110 IYARKLGVDLK 120
           + +        
Sbjct: 73  VESVAASHGWD 83



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 3/159 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E   SG   LD  LG GG  +G    + GP  +GK+TLA   +  + +     A    + 
Sbjct: 248 ERCPSGLEALDRMLG-GGLDRGTSTLVVGPAGAGKSTLATQLVHAAARREERAAVFAFDE 306

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
              +++AR     L  L   Q  T  Q  ++    + +G +  +V  +V        I+ 
Sbjct: 307 PRATLFARARSTGLDLLPFVQSGT-VQVTQVDPAEISAGELVHLVRSAVEGGAQMVLIDS 365

Query: 166 DMG-ESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             G       +  ++ Q    L+    +    ++ + Q 
Sbjct: 366 LNGLLQAMPSEGSMVLQVHEMLSFLAEKHVTTVLTMAQH 404


>gi|171689280|ref|XP_001909580.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944602|emb|CAP70713.1| unnamed protein product [Podospora anserina S mat+]
          Length = 500

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 70/187 (37%), Gaps = 29/187 (15%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL-------------------ALHT 87
            +S+    LD+ALG GG P G I EI G  ++GKT                     AL+ 
Sbjct: 116 TISTLDPHLDLALG-GGIPTGHITEITGESAAGKTQFLLTLLLAVQLPPPHGLSRPALYI 174

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI----TDMLVRS 143
             ++  +    + +  E+ L S   R     L  ++ +     E    I      + +  
Sbjct: 175 STEAPLSTRRLSQMITENPLFSTLPRSARPTLDKIISTTTPDLESQDHILTYQAPVEIAR 234

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGE----SLPGMQARLMSQALRKLTSSISRSKCILVF 199
             V +++IDSVAA   RAE E         S  G +   + +    L     +    +V 
Sbjct: 235 RNVGLLIIDSVAA-NYRAEFERPTPNSNLSSNMGARTNELIKLGMHLKDLAEKYNLAVVV 293

Query: 200 INQMRMK 206
            NQ+  +
Sbjct: 294 SNQVADR 300


>gi|14521160|ref|NP_126635.1| recombinase related [Pyrococcus abyssi GE5]
 gi|5458378|emb|CAB49866.1| recA family AAA ATPase [Pyrococcus abyssi GE5]
          Length = 240

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 20/131 (15%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF----- 100
           E +S+G  GLD  +  GG   GR+  I GP  SGKTT  +H + +  + G   A+     
Sbjct: 6   ERISTGVKGLDELI-EGGLIPGRVYLITGPPGSGKTTFGMHFLLEGARKGEKVAYVSLIH 64

Query: 101 -----------VDAEHALDSIYARKLGVDLKNLLI---SQPDTGEQALEITDMLVRSGAV 146
                       D    +     + +  DL  +L    ++  T    L     +V    +
Sbjct: 65  KPEEVVKDMLRFDPSIYVYVNKWKLMLYDLGPVLWRESTRVPTWRSVLSRIREIVEDEGI 124

Query: 147 DIIVIDSVAAL 157
             +VID + A+
Sbjct: 125 SRLVIDPLTAI 135


>gi|85708646|ref|ZP_01039712.1| predicted ATP-dependent serine protease [Erythrobacter sp. NAP1]
 gi|85690180|gb|EAQ30183.1| predicted ATP-dependent serine protease [Erythrobacter sp. NAP1]
          Length = 440

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 68/193 (35%), Gaps = 2/193 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G    D ALG GG   G  V + G    GK+TL L T A   + G    +V  E A  
Sbjct: 56  STGLAEFDRALG-GGIVPGSAVLMGGDPGIGKSTLLLQTAATIARGGNDVVYVSGEEAAG 114

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +  R   + + +  I    +     +I   L +     +++IDS+  +           
Sbjct: 115 QVRLRAQRLGVADAPIRLA-SETSVRDILTTLGQGDPPALLIIDSIQTMHSDTIEGAPGT 173

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
            S     A  + +  +   +++     +    N    ++         +  G     Y  
Sbjct: 174 VSQVRGCALELIRYAKSSGAALVLVGHVTKDGNIAGPRVLEHMVDVVMSFEGERSHQYRI 233

Query: 229 VRLDIRRVGSIKD 241
           +R    R G++ +
Sbjct: 234 LRALKNRFGAVDE 246


>gi|219666458|ref|YP_002456893.1| DNA repair protein RadA [Desulfitobacterium hafniense DCB-2]
 gi|219536718|gb|ACL18457.1| DNA repair protein RadA [Desulfitobacterium hafniense DCB-2]
          Length = 449

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 61/158 (38%), Gaps = 13/158 (8%)

Query: 35  LGSQGSIFEGI-----EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           LG + +    I     E VSSGS  L+  LG GG   G  V + G    GK+TL L T  
Sbjct: 48  LGVKATPLTEIQIREEERVSSGSQELNRVLG-GGIVPGSFVLLGGEPGIGKSTLLLQTAG 106

Query: 90  QSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
                G    ++  E +   I   A +LG+    L I      E  LE+   +  +    
Sbjct: 107 LLA-KGMDVLYISGEESEKQIKLRAERLGIKESRLHILT----ETRLEVVRDVALAMGPG 161

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           ++++DS+  +            S     A  + +  ++
Sbjct: 162 LLIVDSIQTMVLEELQAAAGSVSQVREGAAFLMRLAKE 199


>gi|148725193|emb|CAN88786.1| novel protein similar to H.sapiens XRCC3, X-ray repair
           complementing defective repair in Chinese hamster cells
           3 (XRCC3, zgc:101608) [Danio rerio]
          Length = 249

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 76/241 (31%), Gaps = 44/241 (18%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---GGT 97
           + E    +S     LD  +  GG P   I E+ G  ++GKT   L      Q     GG 
Sbjct: 13  VLEPGHRLSFACPVLDGLM-RGGLPLRGITELAGESAAGKTQFCLQLCLSVQYPQEHGGL 71

Query: 98  ---CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD------- 147
                ++  E +      R+L      L    P     +L  +D +    A D       
Sbjct: 72  NSGAVYICTEDSFPIKRLRQLITQQPRLRPDLPPALIHSLRFSDNIYIEHAADLEALQVC 131

Query: 148 ---------------IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                          ++V+DSVAAL  R+E + D        ++R +      L      
Sbjct: 132 VSQRVPVLLKRGLVRLLVVDSVAALF-RSEFQAD----EAVQRSRHLLAFSSTLHRLSHT 186

Query: 193 SKCILVFINQMRMKI--GVMFGSPETTTGGNA-------LKFYSSVRLDIRR-VGSIKDK 242
               ++ +NQ+   +             G                VRL +RR  G +K  
Sbjct: 187 YAAPVLCVNQVTDVVDGPNPGRCDYGLVGSKVLPALGIAWANQVMVRLMLRRLAGQVKSD 246

Query: 243 D 243
            
Sbjct: 247 S 247


>gi|61806653|ref|NP_001013559.1| DNA repair protein XRCC3 [Danio rerio]
 gi|60552509|gb|AAH90820.1| X-ray repair complementing defective repair in Chinese hamster
           cells 3 [Danio rerio]
 gi|182888930|gb|AAI64394.1| Xrcc3 protein [Danio rerio]
          Length = 352

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 76/241 (31%), Gaps = 44/241 (18%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---GGT 97
           + E    +S     LD  +  GG P   I E+ G  ++GKT   L      Q     GG 
Sbjct: 75  VLEPGHRLSFACPVLDGLM-RGGLPLRGITELAGESAAGKTQFCLQLCLSVQYPQEHGGL 133

Query: 98  ---CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD------- 147
                ++  E +      R+L      L    P     +L  +D +    A D       
Sbjct: 134 NSGAVYICTEDSFPIKRLRQLITQQPRLRPDLPPALIHSLRFSDNIYIEHAADLEALQVC 193

Query: 148 ---------------IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                          ++V+DSVAAL  R+E + D        ++R +      L      
Sbjct: 194 VSQRVPVLLKRGLVRLLVVDSVAALF-RSEFQAD----EAVQRSRHLLAFSSTLHRLSHT 248

Query: 193 SKCILVFINQMRMKI--GVMFGSPETTTGGNA-------LKFYSSVRLDIRR-VGSIKDK 242
               ++ +NQ+   +             G                VRL +RR  G +K  
Sbjct: 249 YAAPVLCVNQVTDVVDGPNPGRCDYGLVGSKVLPALGIAWANQVMVRLMLRRLAGQVKSD 308

Query: 243 D 243
            
Sbjct: 309 S 309


>gi|55251032|emb|CAH68987.1| novel protein similar to H.sapiens XRCC3, X-ray repair
           complementing defective repair in Chinese hamster cells
           3 (XRCC3, zgc:101608) [Danio rerio]
          Length = 352

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 76/241 (31%), Gaps = 44/241 (18%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---GGT 97
           + E    +S     LD  +  GG P   I E+ G  ++GKT   L      Q     GG 
Sbjct: 75  VLEPGHRLSFACPVLDGLM-RGGLPLRGITELAGESAAGKTQFCLQLCLSVQYPQEHGGL 133

Query: 98  ---CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD------- 147
                ++  E +      R+L      L    P     +L  +D +    A D       
Sbjct: 134 NSGAVYICTEDSFPIKRLRQLITQQPRLRPDLPPALIHSLRFSDNIYIEHAADLEALQVC 193

Query: 148 ---------------IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                          ++V+DSVAAL  R+E + D        ++R +      L      
Sbjct: 194 VSQRVPVLLKRGLVRLLVVDSVAALF-RSEFQAD----EAVQRSRHLLAFSSTLHRLSHT 248

Query: 193 SKCILVFINQMRMKI--GVMFGSPETTTGGNA-------LKFYSSVRLDIRR-VGSIKDK 242
               ++ +NQ+   +             G                VRL +RR  G +K  
Sbjct: 249 YAAPVLCVNQVTDVVDGPNPGRCDYGLVGSKVLPALGIAWANQVMVRLMLRRLAGQVKSD 308

Query: 243 D 243
            
Sbjct: 309 S 309


>gi|89893185|ref|YP_516672.1| DNA repair protein RadA [Desulfitobacterium hafniense Y51]
 gi|89332633|dbj|BAE82228.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 449

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 61/158 (38%), Gaps = 13/158 (8%)

Query: 35  LGSQGSIFEGI-----EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           LG + +    I     E VSSGS  L+  LG GG   G  V + G    GK+TL L T  
Sbjct: 48  LGVKATPLTEIQIREEERVSSGSQELNRVLG-GGIVPGSFVLLGGEPGIGKSTLLLQTAG 106

Query: 90  QSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
                G    ++  E +   I   A +LG+    L I      E  LE+   +  +    
Sbjct: 107 LLA-KGMDVLYISGEESEKQIKLRAERLGIKESRLHILT----ETRLEVVRDVALAMGPG 161

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           ++++DS+  +            S     A  + +  ++
Sbjct: 162 LLIVDSIQTMVLEELQAAAGSVSQVREGAAFLMRLAKE 199


>gi|328474633|gb|EGF45438.1| hypothetical protein VP10329_18060 [Vibrio parahaemolyticus 10329]
          Length = 230

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 2/103 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSG   LD  LG GGFP   +VE+    S G+  L L    ++  + G  AF+     ++
Sbjct: 30  SSGFAELDELLG-GGFPSHGVVEMESVGSIGELRL-LAPYLKASLSRGVTAFIQPPALMN 87

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           S++   +G+D+  + I  P     AL   +  ++SG    +++
Sbjct: 88  SLFLHNIGLDINQVWIVSPTHHRDALWAAEQCLKSGVCANVLL 130


>gi|317046817|ref|YP_004114465.1| DNA repair protein RadA [Pantoea sp. At-9b]
 gi|316948434|gb|ADU67909.1| DNA repair protein RadA [Pantoea sp. At-9b]
          Length = 460

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 12/160 (7%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           G   + +L       E +   S+     D  LG GG   G  + I G   +GK+TL L  
Sbjct: 59  GTSRVQKLSEIS--LEALPRFSTSFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQV 115

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
           + +    G    +V  E +L  +  R  +LG+  +NL +    + EQ   I +       
Sbjct: 116 MCKLA-EGMKTLYVTGEESLQQVAMRAHRLGLPTENLNMLSETSIEQICLIAE----QEQ 170

Query: 146 VDIIVIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
             ++VIDS+  +   AEI+   G  +     A  +++  +
Sbjct: 171 PKLMVIDSIQVMH-MAEIQSSPGSVAQVRETAAYLTRFAK 209


>gi|28898808|ref|NP_798413.1| hypothetical protein VP2034 [Vibrio parahaemolyticus RIMD 2210633]
 gi|153838845|ref|ZP_01991512.1| RecA/RadA recombinase [Vibrio parahaemolyticus AQ3810]
 gi|260365608|ref|ZP_05778135.1| RecA/RadA recombinase [Vibrio parahaemolyticus K5030]
 gi|260879150|ref|ZP_05891505.1| RecA/RadA recombinase [Vibrio parahaemolyticus AN-5034]
 gi|260898465|ref|ZP_05906961.1| RecA/RadA recombinase [Vibrio parahaemolyticus Peru-466]
 gi|260899601|ref|ZP_05907996.1| RecA/RadA recombinase [Vibrio parahaemolyticus AQ4037]
 gi|28807027|dbj|BAC60297.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747729|gb|EDM58629.1| RecA/RadA recombinase [Vibrio parahaemolyticus AQ3810]
 gi|308089024|gb|EFO38719.1| RecA/RadA recombinase [Vibrio parahaemolyticus Peru-466]
 gi|308093554|gb|EFO43249.1| RecA/RadA recombinase [Vibrio parahaemolyticus AN-5034]
 gi|308106901|gb|EFO44441.1| RecA/RadA recombinase [Vibrio parahaemolyticus AQ4037]
 gi|308114683|gb|EFO52223.1| RecA/RadA recombinase [Vibrio parahaemolyticus K5030]
          Length = 230

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 2/103 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSG   LD  LG GGFP   +VE+    S G+  L L    ++  + G  AF+     ++
Sbjct: 30  SSGFAELDELLG-GGFPSHGVVEMESVGSIGELRL-LAPYLKASLSRGVTAFIQPPALMN 87

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           S++   +G+D+  + I  P     AL   +  ++SG    +++
Sbjct: 88  SLFLHNIGLDINQVWIVSPTHHRDALWAAEQCLKSGVCANVLL 130


>gi|330952932|gb|EGH53192.1| DNA repair protein RadA [Pseudomonas syringae Cit 7]
          Length = 392

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 58/146 (39%), Gaps = 8/146 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I   S+ S  LD  LG GG   G +V I G    GK+T+ L T+    +      +V
Sbjct: 67  VEEIPRFSTNSTELDRVLG-GGLVDGSVVLIGGDPGIGKSTILLQTLCNIAQR-MPALYV 124

Query: 102 DAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +   +   AR+LG+    L +      E  +E      +     ++VIDS+  +  
Sbjct: 125 TGEESQQQVAMRARRLGLPQDKLRVMT----ETCIETIIATAKVEKPKVMVIDSIQTIFT 180

Query: 160 RAEIEGDMGESLPGMQARLMSQALRK 185
                   G S     A L+ +  ++
Sbjct: 181 EQLQSAPGGVSQVRESAALLVRYAKQ 206


>gi|320322626|gb|EFW78719.1| DNA repair protein RadA [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320330590|gb|EFW86569.1| DNA repair protein RadA [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330873475|gb|EGH07624.1| DNA repair protein RadA [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 455

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 58/146 (39%), Gaps = 8/146 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I   S+ S  LD  LG GG   G +V I G    GK+T+ L T+    +      +V
Sbjct: 67  VEEIPRFSTNSTELDRVLG-GGLVDGSVVLIGGDPGIGKSTILLQTLCNIAQR-MPALYV 124

Query: 102 DAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +   +   AR+LG+    L +      E  +E      +     ++VIDS+  +  
Sbjct: 125 TGEESQQQVAMRARRLGLPQDKLRVMT----ETCIETIIATAKVEKPKVMVIDSIQTIFT 180

Query: 160 RAEIEGDMGESLPGMQARLMSQALRK 185
                   G S     A L+ +  ++
Sbjct: 181 EQLQSAPGGVSQVRESAALLVRYAKQ 206


>gi|302189530|ref|ZP_07266203.1| DNA repair protein RadA [Pseudomonas syringae pv. syringae 642]
          Length = 341

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 58/146 (39%), Gaps = 8/146 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I   S+ S  LD  LG GG   G +V I G    GK+T+ L T+    +      +V
Sbjct: 67  VEEIPRFSTNSTELDRVLG-GGLVDGSVVLIGGDPGIGKSTILLQTLCNIAQR-MPALYV 124

Query: 102 DAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +   +   AR+LG+    L +      E  +E      +     ++VIDS+  +  
Sbjct: 125 TGEESQQQVAMRARRLGLPQDKLRVMT----ETCIETIIATAKVEKPKVMVIDSIQTIFT 180

Query: 160 RAEIEGDMGESLPGMQARLMSQALRK 185
                   G S     A L+ +  ++
Sbjct: 181 EQLQSAPGGVSQVRESAALLVRYAKQ 206


>gi|298250875|ref|ZP_06974679.1| KaiA binding protein [Ktedonobacter racemifer DSM 44963]
 gi|297548879|gb|EFH82746.1| KaiA binding protein [Ktedonobacter racemifer DSM 44963]
          Length = 529

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +G   LD+ L  GG PKG +  I GP  SGKTTLA      + + G    F+ A
Sbjct: 23  PTGIPHLDLVL-DGGLPKGALTVILGPPGSGKTTLASQIAFAAAQRGEKVLFLTA 76


>gi|289675887|ref|ZP_06496777.1| DNA repair protein RadA [Pseudomonas syringae pv. syringae FF5]
          Length = 382

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 58/146 (39%), Gaps = 8/146 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I   S+ S  LD  LG GG   G +V I G    GK+T+ L T+    +      +V
Sbjct: 67  VEEIPRFSTNSTELDRVLG-GGLVDGSVVLIGGDPGIGKSTILLQTLCNIAQR-MPALYV 124

Query: 102 DAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +   +   AR+LG+    L +      E  +E      +     ++VIDS+  +  
Sbjct: 125 TGEESQQQVAMRARRLGLPQDKLRVMT----ETCIETIIATAKVEKPKVMVIDSIQTIFT 180

Query: 160 RAEIEGDMGESLPGMQARLMSQALRK 185
                   G S     A L+ +  ++
Sbjct: 181 EQLQSAPGGVSQVRESAALLVRYAKQ 206


>gi|66047502|ref|YP_237343.1| DNA repair protein RadA [Pseudomonas syringae pv. syringae B728a]
 gi|71734636|ref|YP_276449.1| DNA repair protein RadA [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|257482148|ref|ZP_05636189.1| DNA repair protein RadA [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|289628317|ref|ZP_06461271.1| DNA repair protein RadA [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289650115|ref|ZP_06481458.1| DNA repair protein RadA [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|298488837|ref|ZP_07006863.1| DNA repair protein RadA [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|63258209|gb|AAY39305.1| DNA repair protein RadA [Pseudomonas syringae pv. syringae B728a]
 gi|71555189|gb|AAZ34400.1| DNA repair protein RadA [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|115265655|dbj|BAF32916.1| DNA repair protein RadA [Pseudomonas syringae pv. phaseolicola]
 gi|298156637|gb|EFH97731.1| DNA repair protein RadA [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|330868993|gb|EGH03702.1| DNA repair protein RadA [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330895502|gb|EGH27813.1| DNA repair protein RadA [Pseudomonas syringae pv. japonica str.
           M301072PT]
 gi|330969531|gb|EGH69597.1| DNA repair protein RadA [Pseudomonas syringae pv. aceris str.
           M302273PT]
 gi|330987554|gb|EGH85657.1| DNA repair protein RadA [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331011385|gb|EGH91441.1| DNA repair protein RadA [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 455

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 58/146 (39%), Gaps = 8/146 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I   S+ S  LD  LG GG   G +V I G    GK+T+ L T+    +      +V
Sbjct: 67  VEEIPRFSTNSTELDRVLG-GGLVDGSVVLIGGDPGIGKSTILLQTLCNIAQR-MPALYV 124

Query: 102 DAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +   +   AR+LG+    L +      E  +E      +     ++VIDS+  +  
Sbjct: 125 TGEESQQQVAMRARRLGLPQDKLRVMT----ETCIETIIATAKVEKPKVMVIDSIQTIFT 180

Query: 160 RAEIEGDMGESLPGMQARLMSQALRK 185
                   G S     A L+ +  ++
Sbjct: 181 EQLQSAPGGVSQVRESAALLVRYAKQ 206


>gi|121999007|ref|YP_001003794.1| putative circadian clock protein, KaiC [Halorhodospira halophila
           SL1]
 gi|121590412|gb|ABM62992.1| circadian clock protein KaiC [Halorhodospira halophila SL1]
          Length = 484

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 38/91 (41%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
           G++   +   E   +G  GLD  LG GG  +G  V I G   +GKT+ A      + + G
Sbjct: 247 GTRLEAYPSAERHRTGVAGLDAMLGGGGPYRGSAVMISGQSGTGKTSFAATFAGAACEAG 306

Query: 96  GTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
               ++  E A D +   +  V +      +
Sbjct: 307 DRVLYLSFEEATDELLRNQRSVGVDLAPHIE 337



 Score = 43.7 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 3/80 (3%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG--G 96
           G+   G +   +G  GLD  L  GG P+G+   + G   +GKT +AL       + G   
Sbjct: 11  GARRRGAQTAPTGIEGLDFIL-DGGLPEGQPTLLRGGPGAGKTAIALTFFCHGLEQGEPS 69

Query: 97  TCAFVDAEHALDSIYARKLG 116
             A  D   A  + +A  LG
Sbjct: 70  VLATFDESPAALTRHAEALG 89


>gi|239630187|ref|ZP_04673218.1| DNA repair protein RadA [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301067334|ref|YP_003789357.1| putative ATP-dependent serine protease [Lactobacillus casei str.
           Zhang]
 gi|239527799|gb|EEQ66800.1| DNA repair protein RadA [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300439741|gb|ADK19507.1| Predicted ATP-dependent serine protease [Lactobacillus casei str.
           Zhang]
          Length = 454

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 72/188 (38%), Gaps = 20/188 (10%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            V +G   L+  LG GG   G +V I G    GK+TL L    Q   TGGT  +V  E +
Sbjct: 69  RVKTGLDELNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSGQLANTGGTVLYVSGEES 127

Query: 107 LDSIYARKLGVDLKNL-LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
              I  R   + + N  +   P+T   ++E    ++     D +VIDSV  +        
Sbjct: 128 ASQIKMRAGRLGVANSGMYLYPETDMPSIE---DVINQMQPDYVVIDSVQTM-------N 177

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
               +        + +   +L   I++SK + +FI     K G +        G   L+ 
Sbjct: 178 VPEMNSAVGSVAQIREVTAELMR-IAKSKGVTIFIVGHVTKEGAI-------AGPKILEH 229

Query: 226 YSSVRLDI 233
                L  
Sbjct: 230 MVDTVLYF 237


>gi|14590699|ref|NP_142768.1| hypothetical protein PH0833 [Pyrococcus horikoshii OT3]
 gi|3257244|dbj|BAA29927.1| 483aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 483

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 49/123 (39%), Gaps = 12/123 (9%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +++G   LD  L  GG  KG  V I G   +GKTT +LH    +   G   A++  E 
Sbjct: 266 EKITTGIERLDEML-DGGIYKGSSVLIVGMTGTGKTTFSLHFAIANALQGRKVAYITFEE 324

Query: 106 ALDSIYARK----------LGVDLKNLLISQ-PDTGEQALEITDMLVRSGAVDIIVIDSV 154
            +D I              LG +LK         T          ++     + ++IDS+
Sbjct: 325 PIDQIIRSAKNYGMPIEEVLGRNLKIFAWVPESKTPVHTYIKIKEIIEEFKPEALIIDSL 384

Query: 155 AAL 157
            AL
Sbjct: 385 TAL 387


>gi|306842266|ref|ZP_07474929.1| DNA repair protein RadA [Brucella sp. BO2]
 gi|306287646|gb|EFM59093.1| DNA repair protein RadA [Brucella sp. BO2]
          Length = 467

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 75/214 (35%), Gaps = 6/214 (2%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG  + L S     E    + SG   LD   G GGF +G  + I G    GK+TL     
Sbjct: 54  KGRAVALTSLSGEIEDAPRIISGIGELDRVTG-GGFVRGSALLIGGDPGIGKSTLLTQAA 112

Query: 89  AQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALE-ITDMLVRSGA 145
           A     G    +V  E A+  I   A++LGV    + ++     E  +  I+     S  
Sbjct: 113 AALSNRGHRIVYVSGEEAVAQIRLRAQRLGVAASAVELAAETNVEDIIATISSDNSGSKR 172

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
            D+++IDS+  L            +     A+ M +   K T +       +    Q+  
Sbjct: 173 PDLVIIDSIQTLWTDMADSAPGTVTQVRSSAQAMIRYA-KQTGAAVVLVGHVTKDGQIAG 231

Query: 206 -KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
            ++            G     Y  +R    R G 
Sbjct: 232 PRVVEHMVDGVLYFEGEGGHHYRILRTVKNRFGP 265


>gi|90407834|ref|ZP_01216011.1| DNA repair protein RadA [Psychromonas sp. CNPT3]
 gi|90311099|gb|EAS39207.1| DNA repair protein RadA [Psychromonas sp. CNPT3]
          Length = 472

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 57/266 (21%), Positives = 100/266 (37%), Gaps = 16/266 (6%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIE---VVSSGSLGLDIALGI 61
           +E  +   S++L AA+S+  +      I   G Q      IE    VS+G   LD  LG 
Sbjct: 39  REAAVSSTSRSLNAAISR-TKNTSYTGINSQGVQRMDSVKIEQAARVSTGLSELDRVLG- 96

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS---IYARKLGVD 118
           GG   G +V I G   SGKTTL L  +AQ         +V AE +L         +L ++
Sbjct: 97  GGITLGSVVLISGDPGSGKTTL-LTKVAQIMSQTMVTLYVTAEESLSQWAKRATERLKLN 155

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
              L     DT    +E          V  ++ DS+ A    +      G +     A++
Sbjct: 156 FNELNFLLSDTD--CIEDIVNQCLDNNVRFLIADSIQAFESNSVDGTAGGITQVKTCAKI 213

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           +++  ++       +  ++  +N+     G         T  +     +SVR+ +R   +
Sbjct: 214 LNRLCKQH----GITLILVGQVNKNSQMAGPQTLKHIIDTAIHIEVNDASVRI-LRADKN 268

Query: 239 IKDKDSITGNQTRVKVVKNKMASPFK 264
                   G     +   + + +P +
Sbjct: 269 RFGDTEQVGIFQMTEFGMHSVDNPSR 294


>gi|262170700|ref|ZP_06038378.1| DNA repair protein RadA [Vibrio mimicus MB-451]
 gi|261891776|gb|EEY37762.1| DNA repair protein RadA [Vibrio mimicus MB-451]
          Length = 457

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 16/170 (9%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   +SG   LD  LG GG   G  + I G   +GK+TL L T+           +V
Sbjct: 68  LQEVPRFTSGFKELDRVLG-GGIVPGAAILIGGNPGAGKSTLLLQTMCLLSAQ-MPTLYV 125

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+  ++L +      ++  +I +         I+VIDS+  +  
Sbjct: 126 TGEESLQQVAMRASRLGLPKQHLKMLSETNVDRICQIAE----QEKPRIMVIDSIQVMHV 181

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
                     +     A  +++          +   + VFI     K G 
Sbjct: 182 ADVQSSPGSVAQVRESATALTRYA--------KQNNVAVFIVGHVTKDGT 223


>gi|258620923|ref|ZP_05715957.1| DNA repair protein RadA [Vibrio mimicus VM573]
 gi|258623879|ref|ZP_05718833.1| DNA repair protein RadA [Vibrio mimicus VM603]
 gi|262166400|ref|ZP_06034137.1| DNA repair protein RadA [Vibrio mimicus VM223]
 gi|258583868|gb|EEW08663.1| DNA repair protein RadA [Vibrio mimicus VM603]
 gi|258586311|gb|EEW11026.1| DNA repair protein RadA [Vibrio mimicus VM573]
 gi|262026116|gb|EEY44784.1| DNA repair protein RadA [Vibrio mimicus VM223]
          Length = 457

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 16/170 (9%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   +SG   LD  LG GG   G  + I G   +GK+TL L T+           +V
Sbjct: 68  LQEVPRFTSGFKELDRVLG-GGIVPGAAILIGGNPGAGKSTLLLQTMCLLSAQ-MPTLYV 125

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+  ++L +      ++  +I +         I+VIDS+  +  
Sbjct: 126 TGEESLQQVAMRASRLGLPKQHLKMLSETNVDRICQIAE----QEKPRIMVIDSIQVMHV 181

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
                     +     A  +++          +   + VFI     K G 
Sbjct: 182 ADVQSSPGSVAQVRESATALTRYA--------KQNNVAVFIVGHVTKDGT 223


>gi|229521179|ref|ZP_04410599.1| DNA repair protein RadA [Vibrio cholerae TM 11079-80]
 gi|229341711|gb|EEO06713.1| DNA repair protein RadA [Vibrio cholerae TM 11079-80]
          Length = 459

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 16/170 (9%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   +SG   LD  LG GG   G  + I G   +GK+TL L T+           +V
Sbjct: 70  LQEVPRFTSGFKELDRVLG-GGIVPGAAILIGGNPGAGKSTLLLQTMCLLSAQ-MPTLYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+  ++L +      ++  +I +         I+VIDS+  +  
Sbjct: 128 TGEESLQQVAMRASRLGLPKQHLKMLSETNVDRICQIAE----QEKPRIMVIDSIQVMHV 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
                     +     A  +++          +   + VFI     K G 
Sbjct: 184 ADVQSSPGSVAQVRESATALTRYA--------KQNNVAVFIVGHVTKDGT 225


>gi|229513979|ref|ZP_04403441.1| DNA repair protein RadA [Vibrio cholerae TMA 21]
 gi|229349160|gb|EEO14117.1| DNA repair protein RadA [Vibrio cholerae TMA 21]
          Length = 459

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 16/170 (9%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   +SG   LD  LG GG   G  + I G   +GK+TL L T+           +V
Sbjct: 70  LQEVPRFTSGFKELDRVLG-GGIVPGAAILIGGNPGAGKSTLLLQTMCLLSGQ-MPTLYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+  ++L +      ++  +I +         I+VIDS+  +  
Sbjct: 128 TGEESLQQVAMRASRLGLPKQHLKMLSETNVDRICQIAE----QEKPRIMVIDSIQVMHV 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
                     +     A  +++          +   + VFI     K G 
Sbjct: 184 ADVQSSPGSVAQVRESATALTRYA--------KQNNVAVFIVGHVTKDGT 225


>gi|298500294|ref|ZP_07010099.1| DNA repair protein RadA [Vibrio cholerae MAK 757]
 gi|297540987|gb|EFH77041.1| DNA repair protein RadA [Vibrio cholerae MAK 757]
          Length = 373

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 16/170 (9%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   +SG   LD  LG GG   G  + I G   +GK+TL L T+           +V
Sbjct: 70  LQEVPRFTSGFKELDRVLG-GGIVPGAAILIGGNPGAGKSTLLLQTMCLLSGQ-MPTLYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+  ++L +      ++  +I +         I+VIDS+  +  
Sbjct: 128 TGEESLQQVAMRASRLGLPKQHLKMLSETNVDRICQIAE----QEKPRIMVIDSIQVMHV 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
                     +     A  +++          +   + VFI     K G 
Sbjct: 184 ADVQSSPGSVAQVRESATALTRYA--------KQNNVAVFIVGHVTKDGT 225


>gi|153830840|ref|ZP_01983507.1| DNA repair protein RadA [Vibrio cholerae 623-39]
 gi|148873674|gb|EDL71809.1| DNA repair protein RadA [Vibrio cholerae 623-39]
          Length = 325

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 16/170 (9%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   +SG   LD  LG GG   G  + I G   +GK+TL L T+           +V
Sbjct: 68  LQEVPRFTSGFKELDRVLG-GGIVPGAAILIGGNPGAGKSTLLLQTMCLLSGQ-MPTLYV 125

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+  ++L +      ++  +I +         I+VIDS+  +  
Sbjct: 126 TGEESLQQVAMRASRLGLPKQHLKMLSETNVDRICQIAE----QEKPRIMVIDSIQVMHV 181

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
                     +     A  +++          +   + VFI     K G 
Sbjct: 182 ADVQSSPGSVAQVRESATALTRYA--------KQNNVAVFIVGHVTKDGT 223


>gi|254225819|ref|ZP_04919423.1| DNA repair protein RadA [Vibrio cholerae V51]
 gi|125621633|gb|EAZ49963.1| DNA repair protein RadA [Vibrio cholerae V51]
          Length = 459

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 16/170 (9%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   +SG   LD  LG GG   G  + I G   +GK+TL L T+           +V
Sbjct: 70  LQEVPRFTSGFKELDRVLG-GGIVPGAAILIGGNPGAGKSTLLLQTMCLLSGQ-MPTLYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+  ++L +      ++  +I +         I+VIDS+  +  
Sbjct: 128 TGEESLQQVAMRASRLGLPKQHLKMLSETNVDRICQIAE----QEKPRIMVIDSIQVMHV 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
                     +     A  +++          +   + VFI     K G 
Sbjct: 184 ADVQSSPGSVAQVRESATALTRYA--------KQNNVAVFIVGHVTKDGT 225


>gi|255746977|ref|ZP_05420922.1| DNA repair protein RadA [Vibrio cholera CIRS 101]
 gi|262161481|ref|ZP_06030591.1| DNA repair protein RadA [Vibrio cholerae INDRE 91/1]
 gi|262168331|ref|ZP_06036028.1| DNA repair protein RadA [Vibrio cholerae RC27]
 gi|255735379|gb|EET90779.1| DNA repair protein RadA [Vibrio cholera CIRS 101]
 gi|262023223|gb|EEY41927.1| DNA repair protein RadA [Vibrio cholerae RC27]
 gi|262028792|gb|EEY47446.1| DNA repair protein RadA [Vibrio cholerae INDRE 91/1]
 gi|327484845|gb|AEA79252.1| DNA repair protein RadA [Vibrio cholerae LMA3894-4]
          Length = 457

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 16/170 (9%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   +SG   LD  LG GG   G  + I G   +GK+TL L T+           +V
Sbjct: 68  LQEVPRFTSGFKELDRVLG-GGIVPGAAILIGGNPGAGKSTLLLQTMCLLSGQ-MPTLYV 125

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+  ++L +      ++  +I +         I+VIDS+  +  
Sbjct: 126 TGEESLQQVAMRASRLGLPKQHLKMLSETNVDRICQIAE----QEKPRIMVIDSIQVMHV 181

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
                     +     A  +++          +   + VFI     K G 
Sbjct: 182 ADVQSSPGSVAQVRESATALTRYA--------KQNNVAVFIVGHVTKDGT 223


>gi|15642340|ref|NP_231973.1| DNA repair protein RadA [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121586174|ref|ZP_01675965.1| DNA repair protein RadA [Vibrio cholerae 2740-80]
 gi|121729819|ref|ZP_01682253.1| DNA repair protein RadA [Vibrio cholerae V52]
 gi|147673564|ref|YP_001217846.1| DNA repair protein RadA [Vibrio cholerae O395]
 gi|153213948|ref|ZP_01949144.1| DNA repair protein RadA [Vibrio cholerae 1587]
 gi|153803443|ref|ZP_01958029.1| DNA repair protein RadA [Vibrio cholerae MZO-3]
 gi|153817869|ref|ZP_01970536.1| DNA repair protein RadA [Vibrio cholerae NCTC 8457]
 gi|153821506|ref|ZP_01974173.1| DNA repair protein RadA [Vibrio cholerae B33]
 gi|153825993|ref|ZP_01978660.1| DNA repair protein RadA [Vibrio cholerae MZO-2]
 gi|227082467|ref|YP_002811018.1| DNA repair protein RadA [Vibrio cholerae M66-2]
 gi|229507590|ref|ZP_04397095.1| DNA repair protein RadA [Vibrio cholerae BX 330286]
 gi|229512214|ref|ZP_04401693.1| DNA repair protein RadA [Vibrio cholerae B33]
 gi|229519350|ref|ZP_04408793.1| DNA repair protein RadA [Vibrio cholerae RC9]
 gi|229524335|ref|ZP_04413740.1| DNA repair protein RadA [Vibrio cholerae bv. albensis VL426]
 gi|229528664|ref|ZP_04418054.1| DNA repair protein RadA [Vibrio cholerae 12129(1)]
 gi|229607096|ref|YP_002877744.1| DNA repair protein RadA [Vibrio cholerae MJ-1236]
 gi|254285997|ref|ZP_04960958.1| DNA repair protein RadA [Vibrio cholerae AM-19226]
 gi|254849464|ref|ZP_05238814.1| DNA repair protein RadA [Vibrio cholerae MO10]
 gi|297580975|ref|ZP_06942900.1| DNA repair protein RadA [Vibrio cholerae RC385]
 gi|9656910|gb|AAF95486.1| DNA repair protein RadA [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121549586|gb|EAX59610.1| DNA repair protein RadA [Vibrio cholerae 2740-80]
 gi|121628448|gb|EAX60940.1| DNA repair protein RadA [Vibrio cholerae V52]
 gi|124115601|gb|EAY34421.1| DNA repair protein RadA [Vibrio cholerae 1587]
 gi|124121015|gb|EAY39758.1| DNA repair protein RadA [Vibrio cholerae MZO-3]
 gi|126511577|gb|EAZ74171.1| DNA repair protein RadA [Vibrio cholerae NCTC 8457]
 gi|126520999|gb|EAZ78222.1| DNA repair protein RadA [Vibrio cholerae B33]
 gi|146315447|gb|ABQ19986.1| DNA repair protein RadA [Vibrio cholerae O395]
 gi|149740310|gb|EDM54451.1| DNA repair protein RadA [Vibrio cholerae MZO-2]
 gi|150423907|gb|EDN15847.1| DNA repair protein RadA [Vibrio cholerae AM-19226]
 gi|227010355|gb|ACP06567.1| DNA repair protein RadA [Vibrio cholerae M66-2]
 gi|227014238|gb|ACP10448.1| DNA repair protein RadA [Vibrio cholerae O395]
 gi|229332438|gb|EEN97924.1| DNA repair protein RadA [Vibrio cholerae 12129(1)]
 gi|229337916|gb|EEO02933.1| DNA repair protein RadA [Vibrio cholerae bv. albensis VL426]
 gi|229344039|gb|EEO09014.1| DNA repair protein RadA [Vibrio cholerae RC9]
 gi|229352179|gb|EEO17120.1| DNA repair protein RadA [Vibrio cholerae B33]
 gi|229355095|gb|EEO20016.1| DNA repair protein RadA [Vibrio cholerae BX 330286]
 gi|229369751|gb|ACQ60174.1| DNA repair protein RadA [Vibrio cholerae MJ-1236]
 gi|254845169|gb|EET23583.1| DNA repair protein RadA [Vibrio cholerae MO10]
 gi|297534801|gb|EFH73637.1| DNA repair protein RadA [Vibrio cholerae RC385]
          Length = 459

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 16/170 (9%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   +SG   LD  LG GG   G  + I G   +GK+TL L T+           +V
Sbjct: 70  LQEVPRFTSGFKELDRVLG-GGIVPGAAILIGGNPGAGKSTLLLQTMCLLSGQ-MPTLYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+  ++L +      ++  +I +         I+VIDS+  +  
Sbjct: 128 TGEESLQQVAMRASRLGLPKQHLKMLSETNVDRICQIAE----QEKPRIMVIDSIQVMHV 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
                     +     A  +++          +   + VFI     K G 
Sbjct: 184 ADVQSSPGSVAQVRESATALTRYA--------KQNNVAVFIVGHVTKDGT 225


>gi|307595576|ref|YP_003901893.1| putative circadian clock protein KaiC [Vulcanisaeta distributa DSM
           14429]
 gi|307550777|gb|ADN50842.1| putative circadian clock protein, KaiC [Vulcanisaeta distributa DSM
           14429]
          Length = 254

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV---D 102
           ++V +G  GLD ALG GG  +GR   I G   +GKT L+L  +       G        D
Sbjct: 6   DLVPTGIPGLDEALG-GGLIRGRTYLISGETGTGKTLLSLSFLINGIYKYGEPGIYVSVD 64

Query: 103 AEHALDSIYARKLGVDLKNLLI 124
             +       R+ G DL+ L  
Sbjct: 65  ETYDQLMNGVRRFGWDLEALRE 86


>gi|262404667|ref|ZP_06081222.1| DNA repair protein RadA [Vibrio sp. RC586]
 gi|262349699|gb|EEY98837.1| DNA repair protein RadA [Vibrio sp. RC586]
          Length = 457

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 16/170 (9%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   +SG   LD  LG GG   G  + I G   +GK+TL L T+           +V
Sbjct: 68  LQEVPRFTSGFKELDRVLG-GGIVPGAAILIGGNPGAGKSTLLLQTMCLLSAQ-MPTLYV 125

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+  ++L +      ++  +I +         I+VIDS+  +  
Sbjct: 126 TGEESLQQVAMRASRLGLPKEHLKMLSETNVDRICQIAE----QEKPRIMVIDSIQVMHV 181

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
                     +     A  +++          +   + VFI     K G 
Sbjct: 182 ADVQSSPGSVAQVRESATALTRYA--------KQNNVAVFIVGHVTKDGT 223


>gi|261211450|ref|ZP_05925738.1| DNA repair protein RadA [Vibrio sp. RC341]
 gi|260839405|gb|EEX66031.1| DNA repair protein RadA [Vibrio sp. RC341]
          Length = 457

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 16/170 (9%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   +SG   LD  LG GG   G  + I G   +GK+TL L T+           +V
Sbjct: 68  LQEVPRFTSGFKELDRVLG-GGIVPGAAILIGGNPGAGKSTLLLQTMCLLSAQ-MPTLYV 125

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+  ++L +      ++  +I +         I+VIDS+  +  
Sbjct: 126 TGEESLQQVAMRASRLGLPKEHLKMLSETNVDRICQIAE----QEKPRIMVIDSIQVMHV 181

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
                     +     A  +++          +   + VFI     K G 
Sbjct: 182 ADVQSSPGSVAQVRESATALTRYA--------KQNNVAVFIVGHVTKDGT 223


>gi|153813965|ref|ZP_01966633.1| hypothetical protein RUMTOR_00172 [Ruminococcus torques ATCC 27756]
 gi|317501493|ref|ZP_07959691.1| DNA repair protein radA [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088035|ref|ZP_08336956.1| DNA repair protein RadA [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145848361|gb|EDK25279.1| hypothetical protein RUMTOR_00172 [Ruminococcus torques ATCC 27756]
 gi|316897122|gb|EFV19195.1| DNA repair protein radA [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330408991|gb|EGG88450.1| DNA repair protein RadA [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 458

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 58/185 (31%), Gaps = 21/185 (11%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD- 108
           +G   LD  LG GG   G +V + G    GK+TL L                  E     
Sbjct: 79  TGIKELDRVLG-GGIVPGSLVLVGGDPGIGKSTLLLQVCRILADKKKVLYISGEESQTQI 137

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            + A ++G     L +         LEI   ++     +++VIDS+  +           
Sbjct: 138 KLRANRMGNFADGLFLLCETN----LEIIRGILEKERPELVVIDSIQTMYSEEVSSAPGS 193

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
            S       +  Q  + L        CI +FI     K G +        G   L+    
Sbjct: 194 VSQVRESTNVFMQLAKGL--------CIPIFIVGHVTKEGTV-------AGPRVLEHMVD 238

Query: 229 VRLDI 233
             L  
Sbjct: 239 TVLYF 243


>gi|90419482|ref|ZP_01227392.1| putative DNA repair protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90336419|gb|EAS50160.1| putative DNA repair protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 462

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 69/201 (34%), Gaps = 4/201 (1%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
               E    + SG   LD A G GG  +G  + I G    GK+TL + T A   + G + 
Sbjct: 62  SGELEEAPRIVSGIDELDRATG-GGIVRGSALLIGGDPGIGKSTLLMQTAAALSRRGHSV 120

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
            +V  E A+  +  R   ++  +    Q        +I   L  +   D+++IDS+  L 
Sbjct: 121 VYVSGEEAVAQVRLRAQRLNAAD-TDVQLMAETNVEDILATLAEARRPDLVIIDSIQTLW 179

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM-KIGVMFGSPETT 217
                      +   +  + M +   K + +       +    Q+   ++          
Sbjct: 180 SDLAESAPGTVTQVRVGVQAMIRFA-KASGAAVILVGHVTKEGQIAGPRVVEHMVDAVLY 238

Query: 218 TGGNALKFYSSVRLDIRRVGS 238
             G     Y  +R    R G 
Sbjct: 239 FEGEGGHHYRILRTVKNRFGP 259


>gi|229552865|ref|ZP_04441590.1| DNA repair protein RadA [Lactobacillus rhamnosus LMS2-1]
 gi|229313734|gb|EEN79707.1| DNA repair protein RadA [Lactobacillus rhamnosus LMS2-1]
          Length = 396

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 71/188 (37%), Gaps = 20/188 (10%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            V +G   L+  LG GG   G +V I G    GK+TL L    Q   TGGT  +V  E +
Sbjct: 11  RVKTGLAELNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSGQLASTGGTVLYVSGEES 69

Query: 107 LDSIYARKLGVDLKNL-LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
              I  R   + + N  +   P+T   ++E     +     D +VIDSV  +        
Sbjct: 70  ASQIKMRAGRLGVANSGMYLYPETDMPSIENV---IDQMQPDYVVIDSVQTM-------N 119

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
               +        + +   +L   I++SK + +FI     K G +        G   L+ 
Sbjct: 120 VPDMNSAVGSVAQIREVTAELMR-IAKSKGVTIFIVGHVTKEGAI-------AGPKILEH 171

Query: 226 YSSVRLDI 233
                L  
Sbjct: 172 MVDTVLYF 179


>gi|221638869|ref|YP_002525131.1| DNA repair protein RadA [Rhodobacter sphaeroides KD131]
 gi|221159650|gb|ACM00630.1| DNA repair protein RadA [Rhodobacter sphaeroides KD131]
          Length = 452

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 53/162 (32%), Gaps = 4/162 (2%)

Query: 25  RVYG-KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           +  G KG  + L    +        SSG   LD  LG G  P   I+ + G    GK+TL
Sbjct: 44  KALGSKGRTIALSDLATEEAAPPRTSSGIDELDRVLGGGLVPASAIL-VGGDPGIGKSTL 102

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L   A     G  C ++  E A   +  R   + L           E  L      + +
Sbjct: 103 LLQAAASFANGGVKCLYISGEEAAAQVRMRAQRLGLGQ--APVALGAETNLRDILTTLDA 160

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
               + +IDS+  +            +     A  +    ++
Sbjct: 161 ERPALAIIDSIQTMWLDNVDSAPGSVAQVRASAHELVTFAKR 202


>gi|325921183|ref|ZP_08183049.1| RecA-superfamily ATPase possibly involved in signal transduction
           [Xanthomonas gardneri ATCC 19865]
 gi|325548325|gb|EGD19313.1| RecA-superfamily ATPase possibly involved in signal transduction
           [Xanthomonas gardneri ATCC 19865]
          Length = 535

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 81/214 (37%), Gaps = 16/214 (7%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + VSSG   +D  L  GG  +G    + GP  SGKT +AL  +A + + G  C  ++ + 
Sbjct: 284 DAVSSGVERIDALL-YGGPLRGTSTLLTGPAGSGKTNIALQYVAAACERGEHCCILEFDE 342

Query: 106 ALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
              ++   A  LG+DL+  L S      Q   +    +  G     V  SV     R  +
Sbjct: 343 RTGTLLTRAESLGMDLRKHLDSGLLELHQ---MDPAELTPGEFAWAVRGSVEERQCRVLV 399

Query: 164 EGDMGESLPGMQAR-LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
              +   L  M     +   + +L S +++S      +N               +TG   
Sbjct: 400 IDSLNGYLSSMPQEKQLMLQMHELLSYLNQSGVTTFLVN------PQHGLVGTMSTGNLN 453

Query: 223 LKFYSSVRLDIR---RVGSIKDKDSITGNQTRVK 253
           + + +   +  R     G I+   S+  N++   
Sbjct: 454 ISYLADTVVLFRFFEAQGRIRKALSVIKNRSGAH 487



 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 34  QLGSQGSIFEGI-EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           +L   G++   I + +++G+ GLD  L  GG P  R+  + G   SGKTTLAL  +    
Sbjct: 28  KLKVMGNLKPTIAKRITTGTEGLDTIL-RGGLPPNRLYLLEGQPGSGKTTLALQFLLDGA 86

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDL 119
             G +C +V     +D +       D 
Sbjct: 87  ARGESCLYVTLSETIDELNEVAASHDW 113


>gi|16903198|gb|AAL27842.1| RAD51C protein [Chlamydomonas reinhardtii]
          Length = 352

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 75/260 (28%), Gaps = 56/260 (21%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALD 108
           LD  LG GG   G++ E  G    GKT L +      Q         G   ++D E +  
Sbjct: 100 LDALLG-GGVAAGQVTEFCGVPGVGKTQLGMQLAVNVQIPRSLSGPEGQAVYIDTEGSFM 158

Query: 109 SIYARK---------------------------------LGVDLKNLLISQPDTGEQAL- 134
           +                                      L   ++ + + +     + L 
Sbjct: 159 AERCADIAEGAVRHVQSILEKKASMGQPELLHDGERPFTLENVMRGIYLFRVHDHVEQLG 218

Query: 135 --EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
              +    +   +   +++        R +            + R+++   ++L S    
Sbjct: 219 LVNMLPRFLEQYSQVRLIVIDSVTFHFRQDFPD------MAQRTRVVTGMAQQLISLAQT 272

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI-------RRVGSIKDKDSI 245
               +V +NQ+  K+    GS      G +    +S R+ +       R    IK     
Sbjct: 273 HNVAVVLMNQVTTKVLEGGGSKLVPALGESWGHAASTRVMLTWGPDNERHAQMIKSPHLP 332

Query: 246 TGNQTRVKVVKNKMASPFKQ 265
            G+           + P ++
Sbjct: 333 LGDAAFAVTADGLRSLPRRR 352


>gi|16125906|ref|NP_420470.1| DNA repair protein RadA [Caulobacter crescentus CB15]
 gi|221234669|ref|YP_002517105.1| DNA repair protein RadA [Caulobacter crescentus NA1000]
 gi|13423066|gb|AAK23638.1| DNA repair protein RadA [Caulobacter crescentus CB15]
 gi|220963841|gb|ACL95197.1| DNA repair protein RadA [Caulobacter crescentus NA1000]
          Length = 460

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 3/140 (2%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
             + +G    D   G GG   G  + I G    GK+TL L   A +   G +CA++  E 
Sbjct: 69  PRILTGVDEFDRVCG-GGVVPGSALLIGGDPGVGKSTLLLQVCASAAARGVSCAYISGEE 127

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           A++ I  R   + L    +S     E AL      ++    D++VIDS+  +   A   G
Sbjct: 128 AVEQIRGRADRMGLAKANVSLAA--ETALRDILDGLKRDNFDLVVIDSIQTMWSDAHEAG 185

Query: 166 DMGESLPGMQARLMSQALRK 185
               +     A  + +  +K
Sbjct: 186 PGTVTQVRACATELVRLAKK 205


>gi|119961343|ref|YP_946015.1| DNA repair protein RadA [Arthrobacter aurescens TC1]
 gi|119948202|gb|ABM07113.1| DNA repair protein RadA [Arthrobacter aurescens TC1]
          Length = 457

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 3/132 (2%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +G   LD  LG GG   G ++ + G    GK+TL L   A+  +TG    ++  E + 
Sbjct: 73  LPTGVDELDRVLG-GGLVPGAVILLAGEPGVGKSTLLLDVAAKFARTGQDVLYITGEESA 131

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
             +  R     +  +  +   + E  L      V      ++++DSV  L+         
Sbjct: 132 AQVKLRA--ERIDAVAHTLYLSAETDLGQALGQVEKLEPKLLIVDSVQTLSSADVEGSAG 189

Query: 168 GESLPGMQARLM 179
           G S     A  +
Sbjct: 190 GVSQVREVAASI 201


>gi|269962020|ref|ZP_06176374.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833104|gb|EEZ87209.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 230

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 2/98 (2%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSG   LD  LG GGFP   +VE+    S G+  L L    ++  + G  AF+     ++
Sbjct: 30  SSGFPELDALLG-GGFPPHGVVEMESVGSIGELRL-LAPYLEASLSRGVTAFIQPPALMN 87

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           S++   +G+D+  + +  P+    AL   +  ++SG  
Sbjct: 88  SLFLHSIGLDINQVWVITPEHQRDALWAAEQCLKSGVC 125


>gi|191639267|ref|YP_001988433.1| DNA repair protein RadA [Lactobacillus casei BL23]
 gi|190713569|emb|CAQ67575.1| DNA repair protein RadA [Lactobacillus casei BL23]
 gi|327383348|gb|AEA54824.1| DNA repair protein RadA [Lactobacillus casei LC2W]
 gi|327386531|gb|AEA58005.1| DNA repair protein RadA [Lactobacillus casei BD-II]
          Length = 454

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 72/188 (38%), Gaps = 20/188 (10%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            V +G   L+  LG GG   G +V I G    GK+TL L    Q   TGGT  +V  E +
Sbjct: 69  RVKTGLDELNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSGQLADTGGTVLYVSGEES 127

Query: 107 LDSIYARKLGVDLKNL-LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
              I  R   + + N  +   P+T   ++E    ++     D +VIDSV  +        
Sbjct: 128 ASQIKMRAGRLGVANSGMYLYPETDMPSIE---DVINQMQPDYVVIDSVQTM-------N 177

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
               +        + +   +L   I++SK + +FI     K G +        G   L+ 
Sbjct: 178 VPEMNSAVGSVAQIREVTAELMR-IAKSKGVTIFIVGHVTKEGAI-------AGPKILEH 229

Query: 226 YSSVRLDI 233
                L  
Sbjct: 230 MVDTVLYF 237


>gi|153834870|ref|ZP_01987537.1| RecA/RadA recombinase [Vibrio harveyi HY01]
 gi|148868688|gb|EDL67767.1| RecA/RadA recombinase [Vibrio harveyi HY01]
          Length = 230

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 2/98 (2%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSG   LD  LG GGFP   +VE+    S G+  L L    ++  + G  AF+     ++
Sbjct: 30  SSGFPELDALLG-GGFPPHGVVEMESVGSIGELRL-LAPYLEASLSRGVTAFIQPPALMN 87

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           S++   +G+D+  + +  P+    AL   +  ++SG  
Sbjct: 88  SLFLHSIGLDINQVWVITPEHQRDALWAAEQCLKSGVC 125


>gi|77461106|ref|YP_350613.1| DNA repair protein RadA [Pseudomonas fluorescens Pf0-1]
 gi|77385109|gb|ABA76622.1| DNA replication and repair protein RadA [Pseudomonas fluorescens
           Pf0-1]
          Length = 455

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 8/145 (5%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I   S+ S  LD  LG GG   G +V I G    GK+T+ L T+    K+     +V 
Sbjct: 68  EEIPRFSTASGELDRVLG-GGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKS-MPALYVT 125

Query: 103 AEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
            E +   +   AR+LG+    L +      E  +E      R     ++VIDS+  +   
Sbjct: 126 GEESQQQVAMRARRLGLPQDQLRVMT----ETCIETIIATARQEKPKVMVIDSIQTIFTE 181

Query: 161 AEIEGDMGESLPGMQARLMSQALRK 185
                  G S     A L+ +  ++
Sbjct: 182 QLQSAPGGVSQVRESAALLVRYAKQ 206


>gi|251791156|ref|YP_003005877.1| DNA repair protein RadA [Dickeya zeae Ech1591]
 gi|247539777|gb|ACT08398.1| DNA repair protein RadA [Dickeya zeae Ech1591]
          Length = 461

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 65/158 (41%), Gaps = 9/158 (5%)

Query: 30  GAIMQLGSQGSI-FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           G++ ++     I  E +   S+G    D  LG GG   G  + I G   +GK+TL L T+
Sbjct: 59  GSVSRVQKLSDISLEALPRFSTGFQEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTL 117

Query: 89  AQSQKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            +  +      +V  E +L  +  R  +LG+  +++ +    + EQ   I +        
Sbjct: 118 CKLAEQ-MKTLYVTGEESLQQVAMRAHRLGLPAQHINMLSETSIEQICLIAE----QEQP 172

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
            ++VIDS+  +            +     A  +++  +
Sbjct: 173 KLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAK 210


>gi|209944586|gb|ACI96524.1| spindle D [Drosophila melanogaster]
 gi|209944594|gb|ACI96528.1| spindle D [Drosophila melanogaster]
          Length = 212

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 8/117 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           + +G   LD   G GG   G +VE+ G   +GKT + L      Q         G+  F+
Sbjct: 46  ILTGKKALDTHFG-GGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFI 104

Query: 102 DAEHALDSIYARKLGVDLK-NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           D            L + L+       P+     +      VR   +D ++   ++  
Sbjct: 105 DTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKMLQKIHYVRCPKLDQLMATVLSCH 161


>gi|1574440|gb|AAC23242.1| DNA repair protein (radA) [Haemophilus influenzae Rd KW20]
          Length = 475

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +     SSG   LD  LG GG   G  + I G   +GK+TL L  +        T  +V
Sbjct: 86  LQETPRFSSGFSELDRVLG-GGIVPGSAILIGGHPGAGKSTLLLQVMCGLA-KNMTALYV 143

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+    L +    + EQ   + D L       IIV+DS+  +  
Sbjct: 144 TGEESLQQVAMRASRLGLPSDQLKMLSETSVEQICNLADQLKPQ----IIVVDSIQVMHL 199

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     +     A  +++  +    +I  
Sbjct: 200 ADIQSSPGSVAQVRECASFLTRYAKTRQVAIIM 232


>gi|30995458|ref|NP_439739.2| DNA repair protein RadA [Haemophilus influenzae Rd KW20]
 gi|260580373|ref|ZP_05848202.1| DNA repair protein RadA [Haemophilus influenzae RdAW]
 gi|1173465|sp|P45266|RADA_HAEIN RecName: Full=DNA repair protein RadA homolog; AltName: Full=DNA
           repair protein Sms homolog
 gi|260093050|gb|EEW76984.1| DNA repair protein RadA [Haemophilus influenzae RdAW]
          Length = 458

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +     SSG   LD  LG GG   G  + I G   +GK+TL L  +        T  +V
Sbjct: 69  LQETPRFSSGFSELDRVLG-GGIVPGSAILIGGHPGAGKSTLLLQVMCGLA-KNMTALYV 126

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+    L +    + EQ   + D L       IIV+DS+  +  
Sbjct: 127 TGEESLQQVAMRASRLGLPSDQLKMLSETSVEQICNLADQLKPQ----IIVVDSIQVMHL 182

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     +     A  +++  +    +I  
Sbjct: 183 ADIQSSPGSVAQVRECASFLTRYAKTRQVAIIM 215


>gi|299742147|ref|XP_001832284.2| hypothetical protein CC1G_02546 [Coprinopsis cinerea okayama7#130]
 gi|298405051|gb|EAU89657.2| hypothetical protein CC1G_02546 [Coprinopsis cinerea okayama7#130]
          Length = 315

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           +  S+G  GLD  LG GG  +G I+E+ GP  S K  +A + I +  K G +   VD ++
Sbjct: 80  DKFSTGCSGLDKILG-GGLQRGHILELSGPPGSPKELIARNLIIEFAKLGHSVILVDCQN 138

Query: 106 ALDSIYARK 114
           ++D    ++
Sbjct: 139 SIDLRALQR 147


>gi|328724498|ref|XP_001942729.2| PREDICTED: DNA repair protein XRCC3-like [Acyrthosiphon pisum]
          Length = 330

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 79/221 (35%), Gaps = 37/221 (16%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ----KTGGT--CAF 100
           ++++G   +D  LG GG  K  I EI G    GKT   L      Q      G     A+
Sbjct: 87  ILTTGCKQIDKLLG-GGLFKYGITEISGESGCGKTQFCLQIALTVQLPLSLKGAKSGAAY 145

Query: 101 VDAEHALDSIYARKLGVDL---------------------KNLLISQPDTGEQ----ALE 135
           +  E    S   +++  ++                      N+LIS   T E       E
Sbjct: 146 ICTEDRFPSSRIQQMISNIRFKYQCDSKIDMNELCQTDYGDNILISHIATVEDLKKCIHE 205

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           +   ++    + +IVIDS+ A+       G+   S    ++R +      L         
Sbjct: 206 MLPRVLLHRPIKLIVIDSITAVF-----RGEYTPSEVPRRSRDLRDIAVFLHKLSVEHGL 260

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
            ++ +NQ+   I  + G+    + G A     + RL + + 
Sbjct: 261 WIICVNQVTSSISDIGGNKLVPSLGLAWANLVTTRLMMSKT 301


>gi|303228924|ref|ZP_07315734.1| DNA repair protein RadA [Veillonella atypica ACS-134-V-Col7a]
 gi|303231494|ref|ZP_07318224.1| DNA repair protein RadA [Veillonella atypica ACS-049-V-Sch6]
 gi|302513837|gb|EFL55849.1| DNA repair protein RadA [Veillonella atypica ACS-049-V-Sch6]
 gi|302516338|gb|EFL58270.1| DNA repair protein RadA [Veillonella atypica ACS-134-V-Col7a]
          Length = 458

 Score = 50.2 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 54/146 (36%), Gaps = 7/146 (4%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
              +  + +    +D  LG GG   G ++ + G    GK+TL L    +   T GT  + 
Sbjct: 67  MSAVSRIPTTYKEIDRVLG-GGIVPGALMLLGGDPGIGKSTLLLQVSQKVADTVGTVLYA 125

Query: 102 DAEHALDS--IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +     + A +L ++ + L +      +  LE+      S    ++VIDS+  +  
Sbjct: 126 SGEESQLQLKLRAERLHINSERLHVIADTDLDHILEVALDPKPS----LLVIDSIQTMFT 181

Query: 160 RAEIEGDMGESLPGMQARLMSQALRK 185
                     S        + +  ++
Sbjct: 182 ADIEAAPGSVSQVRECTSHLLRFCKE 207


>gi|330938120|gb|EGH41846.1| DNA repair protein RadA [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 455

 Score = 50.2 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 58/146 (39%), Gaps = 8/146 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I   S+ S  LD  LG GG   G +V I G    GK+T+ L T+    +      +V
Sbjct: 67  VEEIPRFSTNSTELDRVLG-GGLVDGSVVLIGGDPGIGKSTILLQTLCNIPQR-MPALYV 124

Query: 102 DAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +   +   AR+LG+    L +      E  +E      +     ++VIDS+  +  
Sbjct: 125 TGEESQQQVAMRARRLGLPQDKLRVMT----ETCIETIIATAKVEKPKVMVIDSIQTIFT 180

Query: 160 RAEIEGDMGESLPGMQARLMSQALRK 185
                   G S     A L+ +  ++
Sbjct: 181 EQLQSAPGGVSQVRESAALLVRYAKQ 206


>gi|300715203|ref|YP_003740006.1| DNA repair protein radA (DNA repair protein sms) [Erwinia
           billingiae Eb661]
 gi|299061039|emb|CAX58146.1| DNA repair protein radA (DNA repair protein sms) [Erwinia
           billingiae Eb661]
          Length = 460

 Score = 50.2 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 10/146 (6%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ +    G    +V
Sbjct: 71  LEALPRFSTGFKEFDRVLG-GGVVPGSAILIGGSPGAGKSTLLLQTLCKLA-EGMKTLYV 128

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+  +NL +    + EQ   I +         ++VIDS+  +  
Sbjct: 129 TGEESLQQVAMRAHRLGLPTENLNMLSETSIEQICLIAE----QEQPRLMVIDSIQVMH- 183

Query: 160 RAEIEGDMGE-SLPGMQARLMSQALR 184
            A+I+   G  +     A  +++  +
Sbjct: 184 MADIQSSPGSVAQVRETAAYLTRFAK 209


>gi|256423337|ref|YP_003123990.1| circadian clock protein KaiC [Chitinophaga pinensis DSM 2588]
 gi|256038245|gb|ACU61789.1| putative circadian clock protein, KaiC [Chitinophaga pinensis DSM
           2588]
          Length = 574

 Score = 50.2 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 66/225 (29%), Gaps = 13/225 (5%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + +SSG   LD  LG  GF +G  + + G   +GKT++A +    S K    C +   E 
Sbjct: 254 QRISSGIPSLDAMLGGNGFFRGSSILVSGTAGTGKTSIATYFADASCKRKEKCLYFAFEE 313

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +   I      + +            +       L       + +   +    PR  I  
Sbjct: 314 SPRQIVRNMNSIGIDLQKHMDAG-LLEIHSSRPTLYGLEMHLVAIHKVIRKFRPRTVIID 372

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
            +   +       +   L +L   +      ++F   +  K              + +  
Sbjct: 373 PITNLITIGSMSEVKSMLIRLIDFLQSENITVIFTALVFEKEPSTQTDEGV---SSLVDA 429

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           +  VR                 N+    +    M    +  EF I
Sbjct: 430 WILVRDIESNGER---------NRGIYIMKARGMDHSNQVREFVI 465


>gi|254446505|ref|ZP_05059981.1| hypothetical protein VDG1235_4756 [Verrucomicrobiae bacterium
           DG1235]
 gi|198260813|gb|EDY85121.1| hypothetical protein VDG1235_4756 [Verrucomicrobiae bacterium
           DG1235]
          Length = 271

 Score = 50.2 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 9/135 (6%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP-ESS 78
           L+ ++   G+     LG + +     E++ +G   LD AL  GG   G + EI     S 
Sbjct: 54  LASLEGRLGE-----LGVERAAPAESEILGTGVDSLDGAL-DGGLRSGLLTEIAESGASC 107

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           G   L LH +A +++     A VD     D       G  L++LL ++  +  +A+ + D
Sbjct: 108 GGQALLLHLLAGTRREQRFAALVDGADGFDP--GSASGELLEHLLWARCRSAGEAMRVAD 165

Query: 139 MLVRSGAVDIIVIDS 153
            L+R   + ++++D 
Sbjct: 166 ALLRDENLGMVLVDL 180


>gi|167760711|ref|ZP_02432838.1| hypothetical protein CLOSCI_03096 [Clostridium scindens ATCC 35704]
 gi|167661598|gb|EDS05728.1| hypothetical protein CLOSCI_03096 [Clostridium scindens ATCC 35704]
          Length = 336

 Score = 50.2 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 55/272 (20%), Positives = 98/272 (36%), Gaps = 36/272 (13%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQK------------TGGTCAFVDAEHALDSIY 111
            P G++  + G    GKTT+ L  IA+  K              G    +D  + +    
Sbjct: 35  IPFGKVTIVQGDPGEGKTTMVLQIIAKLTKGESVLSGSDEPILEGKTMALDPVNVIYQTA 94

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI----IVIDSVAALTPRAEIEGDM 167
              LG  +K  L++      + + I D       +D+     +I + A L     I+G +
Sbjct: 95  EDGLGDTIKPRLLAAGADCSRVMVIDDNDQALTMMDVRLEEAIIQTKARLVVLDPIQGFL 154

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
           G  +   +A  +   ++++     +  C ++ I  M               G  ++ F +
Sbjct: 155 GADVDMHRANEIRPLMKRVAILAEKYHCAIILIGHMNKNSNGKSSYR----GLGSIDFQA 210

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           + R  +  VG IKD+  I      V  VK+ +A   K + F +   +G  + GE      
Sbjct: 211 AARSVLI-VGRIKDEPEI----RVVCHVKSSLAPEGKSIAFRLDKDKGFEWIGEYDISAD 265

Query: 288 KASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
                          G   GQ    +K FL+E
Sbjct: 266 DL-----------LSGDNRGQKIHAAKEFLKE 286


>gi|73966986|ref|XP_548263.2| PREDICTED: similar to DNA repair protein RAD51 homolog 4 (R51H3)
           (TRAD) [Canis familiaris]
          Length = 328

 Score = 50.2 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 82/253 (32%), Gaps = 35/253 (13%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGT 97
             +     ++S+G   LD  L   G   G + EI G   SGKT + L   A         
Sbjct: 73  EELKTSTAILSTGIGSLDKLL-DAGLYTGEVTEIVGGPGSGKTQVCLCVAANVAYGLQQN 131

Query: 98  CAFVDAEHALDSIYARKL-----------GVDLKNLLISQPDTGEQALEITDML------ 140
             ++D+   L +    +L              L+ + + +     Q L++          
Sbjct: 132 VVYIDSNGGLTASRILQLLQARTPDEEVQAGALQRIQVVRAFDIFQMLDVLQDCRGTLSQ 191

Query: 141 ---VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
                SG V ++++DSV A+         +          LM Q  R+L +        +
Sbjct: 192 QVSSASGTVKVVIVDSVTAVVS------PLLGGQQREGLALMMQLARELKTLARDLGMAV 245

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
           V  N M                G +  F  S R+ +     I +    +G+  R  + K+
Sbjct: 246 VVTNHMTRD---RDSGELKPALGRSWSFVPSTRILL----DIDEGARASGSWRRACLTKS 298

Query: 258 KMASPFKQVEFDI 270
                  Q   DI
Sbjct: 299 PRLPTGFQEMVDI 311


>gi|304396481|ref|ZP_07378362.1| DNA repair protein RadA [Pantoea sp. aB]
 gi|308185575|ref|YP_003929706.1| DNA repair protein radA [Pantoea vagans C9-1]
 gi|304355990|gb|EFM20356.1| DNA repair protein RadA [Pantoea sp. aB]
 gi|308056085|gb|ADO08257.1| DNA repair protein radA [Pantoea vagans C9-1]
          Length = 460

 Score = 50.2 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 66/160 (41%), Gaps = 12/160 (7%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           G   + +L       E +   S+     D  LG GG   G  + I G   +GK+TL L  
Sbjct: 59  GTSRVQKLSEIS--LEALPRFSTSFKEFDRVLG-GGVVPGSAILIGGSPGAGKSTLLLQV 115

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
           + +    G    +V  E +L  +  R  +LG+  +N+ +    + EQ   I +       
Sbjct: 116 MCRL-SEGMKTLYVTGEESLQQVAMRAHRLGLPTENVNMLSETSIEQICLIAE----QEQ 170

Query: 146 VDIIVIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
             ++VIDS+  +   AEI+   G  +     A  +++  +
Sbjct: 171 PQLMVIDSIQVMH-MAEIQSSPGSVAQVRETAAYLTRFAK 209


>gi|115754819|ref|XP_790563.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115941809|ref|XP_001193147.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 355

 Score = 50.2 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 88/251 (35%), Gaps = 37/251 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGGT---CAFV 101
           +++G   LD  L  GG     I EI G  ++GKT L L     +Q   + GG      ++
Sbjct: 81  LTTGCPILDEFL-HGGILVKGITEIAGQSAAGKTQLCLQLCLTAQLPVQQGGLSNGVVYI 139

Query: 102 DAEHALDSIYARKL------------------GVDLKNLLISQPDTGEQALE-ITDMLVR 142
             E    S   ++L                  G  +     ++ D     LE    +L+ 
Sbjct: 140 CTEDVFPSKRLQQLISSFNSKIGPALAKQLAVGDHIYVEHAAEKDQLWHCLEKRLPLLLS 199

Query: 143 SGAVDIIVIDSVAALT-PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
            G V + V+DS+AA+     E+   +       +AR + +    L    S+    +V +N
Sbjct: 200 RGMVKLAVVDSLAAIFRSEFELRDTI------RRARELQRVGAHLHRLSSQFNVAVVCVN 253

Query: 202 QMRMKIGVMFGSPE---TTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           Q+   +       E       G        VRL + R          T N+T    V  +
Sbjct: 254 QVTANMKASLDPTESEMMPALGLTWSNIVKVRLMLSRTPYRLPPSDTTNNRTDRGSVNGE 313

Query: 259 MASP-FKQVEF 268
            +    ++ E 
Sbjct: 314 CSHESEQKAEI 324


>gi|326920616|ref|XP_003206565.1| PREDICTED: DNA repair protein RAD51 homolog 2-like [Meleagris
           gallopavo]
          Length = 496

 Score = 50.2 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 61/196 (31%), Gaps = 27/196 (13%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI---- 88
           M++  + S+      + +    LD  L  GG P G + E+  P   GKT   +       
Sbjct: 70  MKM--RRSVDPSAAFLPTSLHSLDKVL-HGGIPCGSLTELTSPPGCGKTQFCITMSVLAT 126

Query: 89  --AQSQKTGGTCAFVDAEHALDSIYARKLGV-------DLKNLLISQPDTGEQALEITDM 139
                    G   ++D E A  +    ++         D    L     +     E+T  
Sbjct: 127 LPVSMGGLDGAVIYIDTESAFSAERLIEIAGNRFPTYFDSDEKLFCMTRSVHLYRELTCD 186

Query: 140 LVRSGAVDI----------IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
            V      +          ++I    A   R E +  +  +L   ++  +++    L   
Sbjct: 187 SVLKRIRSLEEEIISKKIKLIIIDSVASVVRKEFDTKLQGNL-AERSNFLARGASLLKYL 245

Query: 190 ISRSKCILVFINQMRM 205
                  ++  NQ+  
Sbjct: 246 AEEFSIPVILTNQITT 261


>gi|156975139|ref|YP_001446046.1| hypothetical protein VIBHAR_02866 [Vibrio harveyi ATCC BAA-1116]
 gi|156526733|gb|ABU71819.1| hypothetical protein VIBHAR_02866 [Vibrio harveyi ATCC BAA-1116]
          Length = 230

 Score = 50.2 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 2/98 (2%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSG   LD  LG GGFP   +VE+    S G+  L L    ++  + G  AF+     ++
Sbjct: 30  SSGFPELDALLG-GGFPPHGVVEMESVGSIGELRL-LAPYLEASLSRGVTAFIQPPALIN 87

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           S++   +G+D+  + +  P+    AL   +  ++SG  
Sbjct: 88  SLFLHSIGLDINQVWVITPEHQRDALWAAEQCLKSGVC 125


>gi|154344200|ref|XP_001568044.1| recombinase Rad51 [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134065378|emb|CAM40808.1| putative recombinase rad51 [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 684

 Score = 50.2 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 7/76 (9%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK------TGGTCAFV 101
           V++ S  LD  LG GG P   + EI GP   GKT L +               GG C FV
Sbjct: 222 VTTFSRQLDGILG-GGIPVDGVTEISGPPGVGKTQLLMQLAVSCAMPVEFGGMGGACLFV 280

Query: 102 DAEHALDSIYARKLGV 117
           D E +       ++  
Sbjct: 281 DTEGSFVVERLEQMAT 296


>gi|68479930|ref|XP_716015.1| hypothetical protein CaO19.2174 [Candida albicans SC5314]
 gi|68480062|ref|XP_715957.1| hypothetical protein CaO19.9720 [Candida albicans SC5314]
 gi|46437604|gb|EAK96947.1| hypothetical protein CaO19.9720 [Candida albicans SC5314]
 gi|46437664|gb|EAK97006.1| hypothetical protein CaO19.2174 [Candida albicans SC5314]
          Length = 511

 Score = 50.2 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 17/135 (12%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC--AFV 101
             E +S+G   +D  LG GG P G + EI+G    GK+      ++   K   T    ++
Sbjct: 81  DSEFISTGLPSIDRELG-GGIPIGEVTEIFGASGCGKSHFLFQLLSNCGKEFSTSKNIYI 139

Query: 102 DAEHALDSIYARKL--------GVDLKNLLISQPDTGEQALEITDMLVR------SGAVD 147
             E  L++   +            DL  +        E    I    +        G   
Sbjct: 140 STESFLETKRLKDFIGRNSSNIDTDLDRISYIYCQDLESQDHILFTQLPLKLDSDKGKTK 199

Query: 148 IIVIDSVAALTPRAE 162
           ++V+DS+A    R +
Sbjct: 200 LLVLDSIAQHFRRED 214


>gi|323355789|gb|EGA87603.1| Rad57p [Saccharomyces cerevisiae VL3]
          Length = 253

 Score = 50.2 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 58/184 (31%), Gaps = 23/184 (12%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALD 108
           +D  LG GG     I EI+G  S+GK+ L +      Q        GG C ++  E  L 
Sbjct: 1   MDELLG-GGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKCVYITTEGDLP 59

Query: 109 SIYA----------RKLGVDLKNLLISQPDTGEQALEITDMLVR-----SGAVDIIVIDS 153
           +              KLG+   N+     +       I ++ +      S     +VI  
Sbjct: 60  TQRLESMLSSRPAYEKLGITQSNIFTVSCNDLINQEHIINVQLPILLERSKGSIKLVIID 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
             +   R E++              + +   KL          +V  NQ+  K       
Sbjct: 120 SISHHLRVELQNKSFRES-QENKNYLDRMAEKLQILAHDYSLSVVVANQVGDKPLANSPV 178

Query: 214 PETT 217
              T
Sbjct: 179 AHRT 182


>gi|301776470|ref|XP_002923663.1| PREDICTED: DNA repair protein RAD51 homolog 4-like [Ailuropoda
           melanoleuca]
          Length = 302

 Score = 50.2 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 68/247 (27%), Gaps = 23/247 (9%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGT 97
             +     ++S+G   LD  L   G   G + EI G   SGKT + L   A         
Sbjct: 47  EELKTSTAILSTGIGSLDKLL-DAGLYTGEVTEIVGGPGSGKTQVCLCVAANVAYGLQQN 105

Query: 98  CAFVDAEHAL------------DSIYARKLGV--DLKNLLISQPDTGEQALEITDMLVRS 143
             ++D+   L                  + G    ++ +           L+     V  
Sbjct: 106 VVYIDSNGGLTASRILQLLQAKTPAEEEQAGALQRIQVVRAFDIFQMLDVLQDFRGTVSQ 165

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
                        +     +   +          LM Q  R+L +        +V  N +
Sbjct: 166 QVSSGSAATKAVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLARDLGVAVVVTNHV 225

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
                           G +  F  S R+ +     +      +G++ R  + K+      
Sbjct: 226 TRD---RDSGDLKPALGRSWSFVPSTRILL----DVDKGAGASGSRRRACLTKSPRLPTG 278

Query: 264 KQVEFDI 270
            Q   DI
Sbjct: 279 FQEMVDI 285


>gi|281341927|gb|EFB17511.1| hypothetical protein PANDA_012831 [Ailuropoda melanoleuca]
          Length = 300

 Score = 50.2 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 68/247 (27%), Gaps = 23/247 (9%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGT 97
             +     ++S+G   LD  L   G   G + EI G   SGKT + L   A         
Sbjct: 46  EELKTSTAILSTGIGSLDKLL-DAGLYTGEVTEIVGGPGSGKTQVCLCVAANVAYGLQQN 104

Query: 98  CAFVDAEHAL------------DSIYARKLGV--DLKNLLISQPDTGEQALEITDMLVRS 143
             ++D+   L                  + G    ++ +           L+     V  
Sbjct: 105 VVYIDSNGGLTASRILQLLQAKTPAEEEQAGALQRIQVVRAFDIFQMLDVLQDFRGTVSQ 164

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
                        +     +   +          LM Q  R+L +        +V  N +
Sbjct: 165 QVSSGSAATKAVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLARDLGVAVVVTNHV 224

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
                           G +  F  S R+ +     +      +G++ R  + K+      
Sbjct: 225 TRD---RDSGDLKPALGRSWSFVPSTRILL----DVDKGAGASGSRRRACLTKSPRLPTG 277

Query: 264 KQVEFDI 270
            Q   DI
Sbjct: 278 FQEMVDI 284


>gi|284989240|ref|YP_003407794.1| DNA repair protein RadA [Geodermatophilus obscurus DSM 43160]
 gi|284062485|gb|ADB73423.1| DNA repair protein RadA [Geodermatophilus obscurus DSM 43160]
          Length = 449

 Score = 50.2 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 48/134 (35%), Gaps = 3/134 (2%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            V +G    D  LG GG   G ++ + G    GK+TL L    +   + G    V  E +
Sbjct: 67  AVPTGIDEFDRVLG-GGLVPGAVLLVAGEPGVGKSTLLLEVAHRVAASNGPALVVSGEES 125

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
              +  R     +  L        E  L      V   A  ++V+DSV  +   A    D
Sbjct: 126 AAQVRLRA--ERIGALHDRLYLAAETELSAVLAHVEDVAPSLLVLDSVQTVRSPAVEGTD 183

Query: 167 MGESLPGMQARLMS 180
            G +     A  ++
Sbjct: 184 GGSTQVRAVASALT 197


>gi|239814663|ref|YP_002943573.1| circadian clock protein, KaiC [Variovorax paradoxus S110]
 gi|239801240|gb|ACS18307.1| putative circadian clock protein, KaiC [Variovorax paradoxus S110]
          Length = 501

 Score = 50.2 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            + SG   LD  LG GG  +G      G   +GK+T+A+     + + G   A    + +
Sbjct: 258 RIPSGLEALDALLG-GGLERGTSTLFVGAPGTGKSTVAVQFALAAAQRGECAALFIFDES 316

Query: 107 LD--SIYARKLGVDLKNLLIS 125
           +         +G+DL   + S
Sbjct: 317 IHTLRTRCESMGMDLGPYIES 337



 Score = 42.9 bits (99), Expect = 0.077,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 3/105 (2%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L           ++  G  GLD  LG GG    R+  + G   +GKTT+AL  + +  
Sbjct: 1   MKLDGTAVPSAQDGLIKVGVPGLDDVLG-GGLTSNRLYLVEGTPGAGKTTIALQFLIEGV 59

Query: 93  KTGGTCAFVDAEHALDSIY--ARKLGVDLKNLLISQPDTGEQALE 135
           K G +  +V        +   AR  G DL  + + +    E ALE
Sbjct: 60  KRGESVLYVTLSETAQELKGVARSHGWDLSGIEVREMLPSETALE 104


>gi|294625167|ref|ZP_06703810.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294664670|ref|ZP_06730004.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292600539|gb|EFF44633.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292605554|gb|EFF48871.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 505

 Score = 50.2 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 59/160 (36%), Gaps = 9/160 (5%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E V SG   +D  L  GG  +G    + GP  SGKT LAL  +  + + G  C  ++ + 
Sbjct: 253 EPVGSGVERIDALL-HGGPLRGTSTLVTGPAGSGKTNLALQFVVAACERGEHCCVLEFDE 311

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA---- 161
              ++  R  G+ +              LE+  M                ++  RA    
Sbjct: 312 RTGTLLKRAEGLGMDLRKYMDAG----LLELHQMDPAEVTPGEFAWTVRGSVEQRACRIL 367

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
            I+   G      Q + +   + +L S +++S      IN
Sbjct: 368 VIDSLNGYLASMPQEKQLMLQMHELLSYLNQSGVTTFLIN 407



 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +++GS GLD  L  GG P  R+  + G   +GKTTLAL  +      G +C +V     
Sbjct: 11  RITTGSTGLDTIL-RGGLPANRLYLLEGQPGAGKTTLALQFLLDGAAKGESCLYVTLSET 69

Query: 107 LDSIYARKLGVDLK 120
           ++ +          
Sbjct: 70  IEELSEVAASHHWS 83


>gi|156975637|ref|YP_001446544.1| DNA repair protein RadA [Vibrio harveyi ATCC BAA-1116]
 gi|156527231|gb|ABU72317.1| hypothetical protein VIBHAR_03370 [Vibrio harveyi ATCC BAA-1116]
          Length = 459

 Score = 50.2 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 16/170 (9%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   +SG   LD  LG GG   G  + I G   +GK+TL L T+           +V
Sbjct: 70  LQEVPRFTSGFKELDRVLG-GGVVPGAAILIGGNPGAGKSTLLLQTMCLLSSQ-MPTLYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+  ++L +      ++  +I +         I+VIDS+  +  
Sbjct: 128 TGEESLQQVAMRAARLGLPKEHLKMLSETNVDKICQIAEK----EQPRIMVIDSIQVMHV 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
                     +     A  +++          +   + VFI     K G 
Sbjct: 184 SDVQSSPGSVAQVRESATALTRYA--------KQNNVAVFIVGHVTKDGT 225


>gi|240103793|ref|YP_002960102.1| RecA family AAA ATPase [Thermococcus gammatolerans EJ3]
 gi|239911347|gb|ACS34238.1| RecA family AAA ATPase [Thermococcus gammatolerans EJ3]
          Length = 237

 Score = 50.2 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           +   ++ VS+G  GLD  LG GG   GR   + GP  +GKT LA H        G    +
Sbjct: 1   MIPMVKRVSTGIAGLDEMLG-GGLIAGRAYLVEGPPGAGKTILATHFAMAGVDRGENALY 59

Query: 101 VDAEH 105
           V  E 
Sbjct: 60  VTLEE 64


>gi|163853508|ref|YP_001641551.1| circadian clock protein KaiC [Methylobacterium extorquens PA1]
 gi|163665113|gb|ABY32480.1| Non-specific serine/threonine protein kinase [Methylobacterium
           extorquens PA1]
          Length = 575

 Score = 50.2 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           V S+G  GLD  L  GGF +G  + + G   +GKT +    IA +   G  C     E +
Sbjct: 265 VASTGIPGLDAMLEPGGFHRGTSILVSGESGTGKTMITSSMIAAACARGERCMSFVFEES 324

Query: 107 LDSIYARKLGVDLKNLLISQP------------DTGEQALEITDMLVRSGAVDIIVIDSV 154
            D I      + L      +                E  L      +   A  ++V+D +
Sbjct: 325 GDQIIRNARSIGLDLARHVEAGLLRFEAARPSLYGLEMHLARMHRDIDRFAPTVVVVDPL 384

Query: 155 AALT-PRAEIEGDMGESLPGMQARLMSQALRKLT--------SSISRSKCILVFINQMRM 205
           +AL  P AE++  M   +  +++R ++     L         S+I  S  +  +I  + +
Sbjct: 385 SALRGPPAELQATMLRMVDMLKSRGITAVFTSLREDGSLDHDSNIGVSSLMDAWIKLLNI 444

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           +                ++  + VR        I   ++  G
Sbjct: 445 EANGERSRTLYVIKARGMRHSNQVREFSMSGDGITLVEAYIG 486



 Score = 38.7 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 79/261 (30%), Gaps = 23/261 (8%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-GGT 97
                 +  V++G  G D  +  GG PKGR   + G    GKT  A   +       G  
Sbjct: 17  SKSAPALAKVATGIDGFDT-ITFGGLPKGRPSLVCGAAGCGKTLFATTFLVNGATRFGEP 75

Query: 98  CAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI------- 148
             F+  E   + + A    LG DL  L+       +        +  +G  D+       
Sbjct: 76  GVFMSFEERAEDLVANVASLGYDLDGLVAQGKLAIDHVRVERSEIEETGEYDLEGLFIRL 135

Query: 149 -IVIDSVAA----LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
              +DS+ A    L     +     +               K      R    ++   + 
Sbjct: 136 GFAVDSIGAKRIVLDTIETLFAGFSDETVLRAELRRLFGWIK-----DRGLTAIITGERG 190

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS-- 261
             ++         +     L      ++  RR+  +K + S  G      ++  +  S  
Sbjct: 191 DGQLTRQGMEEYVSDCVVLLDNRVEDQITTRRLRVVKYRGSAHGTNEYPFLIDAEGISVL 250

Query: 262 PFKQVEFDIMYGEGISFFGEL 282
           P    + D    EG++  G  
Sbjct: 251 PVTAADLDYTIAEGVASTGIP 271


>gi|308050559|ref|YP_003914125.1| DNA repair protein RadA [Ferrimonas balearica DSM 9799]
 gi|307632749|gb|ADN77051.1| DNA repair protein RadA [Ferrimonas balearica DSM 9799]
          Length = 454

 Score = 50.2 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 8/146 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
              +   SSG   LD  LG GG   G  + I G   +GK+TL L  + Q  +  G   +V
Sbjct: 68  LSEVPRFSSGYSELDRVLG-GGIVPGAAILIGGNPGAGKSTLLLQVMCQLSQQMG-ALYV 125

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +L +    L +    + EQ   I +         I+VIDS+  +  
Sbjct: 126 TGEESLQQVAMRANRLSLPTDKLKMLSETSVEQICLIAE----REKPAIMVIDSIQVMHM 181

Query: 160 RAEIEGDMGESLPGMQARLMSQALRK 185
                     +     A  +++  ++
Sbjct: 182 ADVQSTPGSVAQVRESAAFLTRFAKQ 207


>gi|256810076|ref|YP_003127445.1| DNA repair and recombination protein RadB [Methanocaldococcus
           fervens AG86]
 gi|256793276|gb|ACV23945.1| DNA repair and recombination protein RadB [Methanocaldococcus
           fervens AG86]
          Length = 212

 Score = 50.2 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 79/188 (42%), Gaps = 18/188 (9%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD-- 118
           +G   KG I +IYGP   GKT + +   + +    G   ++D E  L     +++  D  
Sbjct: 7   LGNAEKGIITQIYGPPGVGKTNVCI-INSINAVNFGKVIYMDTEGGLSIERIKQIAPDNY 65

Query: 119 ---LKNLLISQPDTGEQALEITDMLVR--SGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
              L+N++I       +  +I    +   +    +IV+D++ +L  R E+  +  +++  
Sbjct: 66  QKILENMIIYNVFDFYEQDKIIQKEIPLIANNASLIVVDNITSLY-RLELSDEASKNIM- 123

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY--SSVRL 231
              +++   ++ L          ++  NQ+R  +          +GG  L+++    VRL
Sbjct: 124 -LNKMLGNQVKTLLKLAKTYNLAVLITNQVRETVN-----GFEASGGRLLEYWSKCIVRL 177

Query: 232 DIRRVGSI 239
           +      +
Sbjct: 178 EKLNGDRL 185


>gi|254433945|ref|ZP_05047453.1| KaiA binding family [Nitrosococcus oceani AFC27]
 gi|207090278|gb|EDZ67549.1| KaiA binding family [Nitrosococcus oceani AFC27]
          Length = 452

 Score = 50.2 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G I  I GP  +GK+TLA   +AQ+   G   A    E  +D
Sbjct: 215 STGIEKLDKILG-GGLEAGTISLITGPSGTGKSTLASLFVAQAAAQGRKAAIYLFEEEID 273

Query: 109 SIYARKLGVDLK 120
           ++  R   + + 
Sbjct: 274 ALLHRASSLSID 285


>gi|195503840|ref|XP_002098822.1| GE23723 [Drosophila yakuba]
 gi|194184923|gb|EDW98534.1| GE23723 [Drosophila yakuba]
          Length = 406

 Score = 50.2 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 69/219 (31%), Gaps = 37/219 (16%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           + +G+  LD   G GG   G +VE+ G   +GKT + L      Q         G+  F+
Sbjct: 182 ILTGNKALDTHFG-GGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFI 240

Query: 102 DAEHALDSIYARKLGVDLKN-----------------LLISQPDTGEQALEITDML---- 140
           D          ++L + L+                  +   +     Q +          
Sbjct: 241 DTNQDFHPDRLKELALKLERQYAHKVPEFKAHKMLQKVYYVKCHKLHQLMATVLSCHRHL 300

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
                + +IVIDS+A      E      E L       + +++R+L       +   VF 
Sbjct: 301 ANHPDIKLIVIDSLAFTLRMLEDGAQRYEMLLE-----LHESMRRLQR---HHELAWVFT 352

Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239
           N +  +        E   G +      + R+       +
Sbjct: 353 NVLTHRYVRKKFQVEPALG-DLHSHLINERIWFASSSEL 390


>gi|77164831|ref|YP_343356.1| KaiC [Nitrosococcus oceani ATCC 19707]
 gi|76883145|gb|ABA57826.1| KaiC [Nitrosococcus oceani ATCC 19707]
          Length = 482

 Score = 50.2 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G I  I GP  +GK+TLA   +AQ+   G   A    E  +D
Sbjct: 245 STGIEKLDKILG-GGLEAGTISLITGPSGTGKSTLASLFVAQAAAQGRKAAIYLFEEEID 303

Query: 109 SIYARKLGVDLK 120
           ++  R   + + 
Sbjct: 304 ALLHRASSLSID 315



 Score = 43.3 bits (100), Expect = 0.052,   Method: Composition-based stats.
 Identities = 57/323 (17%), Positives = 103/323 (31%), Gaps = 41/323 (12%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VS+G   LD  L  GG  K     + G    GKTTL LH +A +            E 
Sbjct: 6   ERVSTGLEALDHILS-GGLIKQSAYLVRGGPGQGKTTLGLHFLAAADGQSSPLFIGFQEP 64

Query: 106 ALD-SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
                + A  +G+D+ N         E             + D+     V        + 
Sbjct: 65  EEQLRVNAESVGIDISNFRFLSLTPEEH------FFTEQQSYDVFAAADVEQEPLAKSVM 118

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG---- 220
             +  ++P          LR L++ + + +  ++   +   + G         +      
Sbjct: 119 ETVERAIPTHVFVDSMTQLRFLSADVYQYRKQVLSFLRYFRERGATILFTSELSAELPDE 178

Query: 221 ------------NALKFYSSVRLDIRRVGSIKDKDSI--TGNQTRVKVVKNKMASPFKQV 266
                       +     S +++   R  +          GN+      +          
Sbjct: 179 DLQFIADGVITLDTAPNGSFLQVSKFRGSNFLRGPHQMRVGNRGLEIFPRPLPPKANLGE 238

Query: 267 EFDIMYGEGISFFGELIDLGVKASIVD----KSGAWFS-----FKGQRLGQGRENSKIFL 317
           +    +  GI    +++  G++A  +      SG   S     F  Q   QGR+ + I+L
Sbjct: 239 DERWRWSTGIEKLDKILGGGLEAGTISLITGPSGTGKSTLASLFVAQAAAQGRKAA-IYL 297

Query: 318 RENIEIAENIESLLRQNAGLVAD 340
            E     E I++LL + + L  D
Sbjct: 298 FE-----EEIDALLHRASSLSID 315


>gi|123402061|ref|XP_001301981.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121883224|gb|EAX89051.1| hypothetical protein TVAG_144570 [Trichomonas vaginalis G3]
          Length = 328

 Score = 50.2 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 65/194 (33%), Gaps = 11/194 (5%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT--CAFVDAEHALDSIYARKLG----- 116
            PK  I+E  GP   GK+ +  H +     +        +  E  + +    K+      
Sbjct: 92  IPKNGIIEFTGPAGCGKSNIIYHLLINQIISDPERRVVLISTEGHVPTQRLHKIAEMRGL 151

Query: 117 ---VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
                L  +LI +     +  +I ++ +       +   S+ A+   A +     +    
Sbjct: 152 DPEEVLSMILIKEATEVVEFNQIINVTLPQLFSTCVPPPSIVAIDSIAALFRSEFDMNAA 211

Query: 174 MQARLMSQALRKLTSSISRSKCILVF-INQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
            Q   M   +  +   IS S   L+F  NQ+   +G         + G A     ++R+ 
Sbjct: 212 KQRAQMLFDMSTILKWISASYNCLIFTTNQVTANMGPFTTQEWVPSLGLAWSNCVNMRVR 271

Query: 233 IRRVGSIKDKDSIT 246
           + +    +D     
Sbjct: 272 VTKSSMKRDIQEEV 285


>gi|330811851|ref|YP_004356313.1| DNA repair protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379959|gb|AEA71309.1| DNA repair protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 455

 Score = 50.2 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 57/146 (39%), Gaps = 8/146 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I   S+ S  LD  LG GG   G +V I G    GK+T+ L T+           +V
Sbjct: 67  VEEIPRFSTASGELDRVLG-GGLVDGSVVLIGGDPGIGKSTILLQTLCNLATR-MPALYV 124

Query: 102 DAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +   +   AR+LG+    L +      E  +E      R     ++VIDS+  +  
Sbjct: 125 TGEESQQQVAMRARRLGLPQDQLRVMT----ETCIETIIATARLEKPKVMVIDSIQTIFT 180

Query: 160 RAEIEGDMGESLPGMQARLMSQALRK 185
                   G S     A L+ +  ++
Sbjct: 181 EQLQSAPGGVSQVRESAALLVRYAKQ 206


>gi|240140927|ref|YP_002965407.1| RecA-superfamily ATPase implicated in signal transduction
           [Methylobacterium extorquens AM1]
 gi|240010904|gb|ACS42130.1| RecA-superfamily ATPase implicated in signal transduction
           [Methylobacterium extorquens AM1]
          Length = 575

 Score = 50.2 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           V S+G  GLD  L  GGF +G  + + G   +GKT +    IA +   G  C     E +
Sbjct: 265 VASTGIPGLDAMLEPGGFHRGTSILVSGESGTGKTMITSSMIAAACARGERCMSFVFEES 324

Query: 107 LDSIYARKLGVDLKNLLISQP------------DTGEQALEITDMLVRSGAVDIIVIDSV 154
            D I      + L      +                E  L      +   A  ++V+D +
Sbjct: 325 GDQIIRNARSIGLDLARHVEAGLLRFEAARPSLYGLEMHLARMHRDIDRFAPTVVVVDPL 384

Query: 155 AALT-PRAEIEGDMGESLPGMQARLMSQALRKLT--------SSISRSKCILVFINQMRM 205
           +AL  P AE++  M   +  +++R ++     L         S+I  S  +  +I  + +
Sbjct: 385 SALRGPPAELQATMLRMVDMLKSRGITAVFTSLREDGSLDHDSNIGVSSLMDAWIKLLNI 444

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           +                ++  + VR        I   ++  G
Sbjct: 445 EANGERSRTLYVIKARGMRHSNQVREFSMSGDGIALVEAYIG 486



 Score = 40.2 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 79/263 (30%), Gaps = 23/263 (8%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-G 95
                   +  V++G  G D  +  GG PKGR   + G    GKT  A   +       G
Sbjct: 15  DASKSAPALAKVATGIDGFDT-ITFGGLPKGRPSLVCGAAGCGKTLFATTFLVNGATRFG 73

Query: 96  GTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI----- 148
               F+  E   + + A    LG DL  L+       +        +  +G  D+     
Sbjct: 74  EPGVFMSFEERAEDLVANVASLGYDLDGLVAQGKLAIDHVRVERSEIEETGEYDLEGLFI 133

Query: 149 ---IVIDSVAA----LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
                +DS+ A    L     +     +               K      R    ++   
Sbjct: 134 RLGFAVDSIGAKRIVLDTIETLFAGFSDETVLRAELRRLFGWIK-----DRGLTAIITGE 188

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           +   ++         +     L      ++  RR+  +K + S  G      ++  +  S
Sbjct: 189 RGDGQLTRQGMEEYVSDCVVLLDNRVEDQITTRRLRVVKYRGSAHGTNEYPFLIDAEGIS 248

Query: 262 --PFKQVEFDIMYGEGISFFGEL 282
             P    + D    EG++  G  
Sbjct: 249 VLPVTAADLDYTIAEGVASTGIP 271


>gi|71667941|ref|XP_820915.1| DNA recombination and repair protein RAD51 [Trypanosoma cruzi
           strain CL Brener]
 gi|70886278|gb|EAN99064.1| DNA recombination and repair protein RAD51, putative [Trypanosoma
           cruzi]
          Length = 492

 Score = 50.2 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT----TLALHTIAQSQK 93
           +    +  E V++   G+D  LG GG P G + E+ G    GKT     LA++ +   + 
Sbjct: 113 KVEADKESERVTTFCRGIDTLLG-GGLPVGAVSEVCGAPGVGKTQMLMQLAVNCLLPREL 171

Query: 94  TG--GTCAFVDAEHALDSIYARKL 115
            G  G+C F+D E +      R++
Sbjct: 172 GGLHGSCLFIDTEGSFVPERFREI 195


>gi|319790403|ref|YP_004152036.1| DNA repair protein RadA [Thermovibrio ammonificans HB-1]
 gi|317114905|gb|ADU97395.1| DNA repair protein RadA [Thermovibrio ammonificans HB-1]
          Length = 433

 Score = 50.2 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 60/157 (38%), Gaps = 10/157 (6%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           +  E + +G   LD  LG GG  KG +    G    GK+TL L       + G       
Sbjct: 65  KPQERLRTGIEELDRVLG-GGIVKGSVSLFSGEPGVGKSTLLLQVAGLLAEKGRVLYVTA 123

Query: 103 AEHALD-SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
            E     ++ AR+LGV+ KNL +   +     LE     V        V DS+  L    
Sbjct: 124 EESPEQVALRARRLGVESKNLYLLAENN----LEAIAQAVEKLNPLFAVFDSIQTLY-LP 178

Query: 162 EIEGDMGE-SLPGMQARLMSQAL--RKLTSSISRSKC 195
           EIE   G  S     A  ++     R+LTS I     
Sbjct: 179 EIESAAGSVSQVRESAAFITNLSKRRRLTSFIVGHVT 215


>gi|269962008|ref|ZP_06176363.1| DNA repair protein RadA [Vibrio harveyi 1DA3]
 gi|269833331|gb|EEZ87435.1| DNA repair protein RadA [Vibrio harveyi 1DA3]
          Length = 459

 Score = 50.2 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 16/170 (9%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   +SG   LD  LG GG   G  + I G   +GK+TL L T+           +V
Sbjct: 70  LQEVPRFTSGFKELDRVLG-GGVVPGAAILIGGNPGAGKSTLLLQTMCLLSAQ-MPTLYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+  ++L +      ++  +I +         I+VIDS+  +  
Sbjct: 128 TGEESLQQVAMRASRLGLPKEHLKMLSETNVDKICQIAEK----EQPRIMVIDSIQVMHV 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
                     +     A  +++          +   + VFI     K G 
Sbjct: 184 SDVQSSPGSVAQVRESATALTRYA--------KQNNVAVFIVGHVTKDGT 225


>gi|188590035|ref|YP_001919646.1| DNA repair protein RadA [Clostridium botulinum E3 str. Alaska E43]
 gi|188500316|gb|ACD53452.1| DNA repair protein RadA [Clostridium botulinum E3 str. Alaska E43]
          Length = 455

 Score = 50.2 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 7/141 (4%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E   +G   L+  LG GG  KG +  I G    GK+TL L T        G   +V  E 
Sbjct: 70  ERYDTGIRELNRVLG-GGLVKGSLTLISGDPGIGKSTLLLQTANNIALKYGKVLYVSGEE 128

Query: 106 ALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           + + I  R  +LGV+ +NL I         L+   + +     + ++IDS+  +   +  
Sbjct: 129 SEEQIKIRGDRLGVNSENLFIISETN----LDAISIYIEQINPNFVIIDSIQTVFKESVS 184

Query: 164 EGDMGESLPGMQARLMSQALR 184
                 S     +  + +  +
Sbjct: 185 SAPGSVSQVKECSNTIMRICK 205


>gi|163802331|ref|ZP_02196225.1| predicted repair protein [Vibrio sp. AND4]
 gi|159173860|gb|EDP58674.1| predicted repair protein [Vibrio sp. AND4]
          Length = 459

 Score = 50.2 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 16/170 (9%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   +SG   LD  LG GG   G  + I G   +GK+TL L T+           +V
Sbjct: 70  LQEVPRFTSGFKELDRVLG-GGVVPGAAILIGGNPGAGKSTLLLQTMCLLSAQ-MPTLYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+  ++L +      ++  +I +         I+VIDS+  +  
Sbjct: 128 TGEESLQQVAMRASRLGLPKEHLKMLSETNVDKICQIAEK----EQPRIMVIDSIQVMHV 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
                     +     A  +++          +   + VFI     K G 
Sbjct: 184 SDVQSSPGSVAQVRESATALTRYA--------KQNNVAVFIVGHVTKDGT 225


>gi|159467617|ref|XP_001691988.1| RecA-like protein [Chlamydomonas reinhardtii]
 gi|158278715|gb|EDP04478.1| RecA-like protein [Chlamydomonas reinhardtii]
          Length = 238

 Score = 49.8 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 1/81 (1%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
             +     ++++GS  +D  L  GG  +G +VE+ G  +SGKT L L   A +   G   
Sbjct: 91  ERLHTDTGLLTTGSNTIDGLLA-GGLRQGMVVEVAGETASGKTQLCLLAAAAAALQGHEV 149

Query: 99  AFVDAEHALDSIYARKLGVDL 119
            FVD   +       +L   L
Sbjct: 150 MFVDTTGSFKPDRVVQLAEGL 170


>gi|209748868|gb|ACI72741.1| probable ATP-dependent protease [Escherichia coli]
 gi|320643899|gb|EFX13019.1| DNA repair protein RadA [Escherichia coli O157:H- str. 493-89]
 gi|320649057|gb|EFX17639.1| DNA repair protein RadA [Escherichia coli O157:H- str. H 2687]
          Length = 460

 Score = 49.8 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 62/155 (40%), Gaps = 10/155 (6%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D+ LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 63  VQKLSDIS--LEELPRFSTGFKEFDLVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 120 AQQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE----EEQPKLM 174

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           VIDS+  +            +     A  +++  +
Sbjct: 175 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAK 209


>gi|152992191|ref|YP_001357912.1| DNA repair protein RadA [Sulfurovum sp. NBC37-1]
 gi|151424052|dbj|BAF71555.1| DNA repair protein RadA/Sms [Sulfurovum sp. NBC37-1]
          Length = 450

 Score = 49.8 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 66/193 (34%), Gaps = 22/193 (11%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + I    SGS  LD+ LG GG   G +  I G    GK+TL L       +      +V 
Sbjct: 69  DNITRFPSGSCELDLVLG-GGVVPGSLTLIGGSPGIGKSTLLLKIAGNLAQQRKKVLYVS 127

Query: 103 AEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
            E +   I   A +L  + +NL +    +    L      + +   + IVIDS+  L   
Sbjct: 128 GEESAGQIKLRANRLDANHENLFLLPEISLSTVL----SEISNENYEFIVIDSIQTLYSD 183

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
                    +        + +        +++S  I +FI     K G +        G 
Sbjct: 184 ETPSAPGSVTQVRTITFELMR--------VAKSLHIPIFIIGHITKDGSI-------AGP 228

Query: 221 NALKFYSSVRLDI 233
             L+      L  
Sbjct: 229 RVLEHMVDTVLYF 241


>gi|218532366|ref|YP_002423182.1| circadian clock protein KaiC [Methylobacterium chloromethanicum
           CM4]
 gi|254563436|ref|YP_003070531.1| RecA-superfamily ATPase implicated in signal transduction
           [Methylobacterium extorquens DM4]
 gi|218524669|gb|ACK85254.1| putative circadian clock protein, KaiC [Methylobacterium
           chloromethanicum CM4]
 gi|254270714|emb|CAX26719.1| RecA-superfamily ATPase implicated in signal transduction
           [Methylobacterium extorquens DM4]
          Length = 575

 Score = 49.8 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           V S+G  GLD  L  GGF +G  + + G   +GKT +    IA +   G  C     E +
Sbjct: 265 VASTGIPGLDAMLEPGGFHRGTSILVSGESGTGKTMITSSMIAAACARGERCMSFVFEES 324

Query: 107 LDSIYARKLGVDLKNLLISQP------------DTGEQALEITDMLVRSGAVDIIVIDSV 154
            D I      + L      +                E  L      +   A  ++V+D +
Sbjct: 325 GDQIIRNARSIGLDLARHVEAGLLRFEAARPSLYGLEMHLARMHRDIDRFAPTVVVVDPL 384

Query: 155 AALT-PRAEIEGDMGESLPGMQARLMSQALRKLT--------SSISRSKCILVFINQMRM 205
           +AL  P AE++  M   +  +++R ++     L         S+I  S  +  +I  + +
Sbjct: 385 SALRGPPAELQATMLRMVDMLKSRGITAVFTSLREDGSLDHDSNIGVSSLMDAWIKLLNI 444

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           +                ++  + VR        I   ++  G
Sbjct: 445 EANGERSRTLYVIKARGMRHSNQVREFSMSGDGIALVEAYIG 486



 Score = 40.2 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 79/263 (30%), Gaps = 23/263 (8%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-G 95
                   +  V++G  G D  +  GG PKGR   + G    GKT  A   +       G
Sbjct: 15  DASKSAPALAKVATGIDGFDT-ITFGGLPKGRPSLVCGAAGCGKTLFATTFLVNGATRFG 73

Query: 96  GTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI----- 148
               F+  E   + + A    LG DL  L+       +        +  +G  D+     
Sbjct: 74  EPGVFMSFEERAEDLVANVASLGYDLDGLVAQGKLAIDHVRVERSEIEETGEYDLEGLFI 133

Query: 149 ---IVIDSVAA----LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
                +DS+ A    L     +     +               K      R    ++   
Sbjct: 134 RLGFAVDSIGAKRIVLDTIETLFAGFSDETVLRAELRRLFGWIK-----DRGLTAIITGE 188

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
           +   ++         +     L      ++  RR+  +K + S  G      ++  +  S
Sbjct: 189 RGDGQLTRQGMEEYVSDCVVLLDNRVEDQITTRRLRVVKYRGSAHGTNEYPFLIDAEGIS 248

Query: 262 --PFKQVEFDIMYGEGISFFGEL 282
             P    + D    EG++  G  
Sbjct: 249 VLPVTAADLDYTIAEGVASTGIP 271


>gi|254994702|ref|ZP_05276892.1| DNA repair protein RadA [Anaplasma marginale str. Mississippi]
 gi|255002816|ref|ZP_05277780.1| DNA repair protein RadA [Anaplasma marginale str. Puerto Rico]
 gi|255003948|ref|ZP_05278749.1| DNA repair protein RadA [Anaplasma marginale str. Virginia]
 gi|269959111|ref|YP_003328900.1| DNA repair protein RadA [Anaplasma centrale str. Israel]
 gi|269848942|gb|ACZ49586.1| DNA repair protein RadA [Anaplasma centrale str. Israel]
          Length = 452

 Score = 49.8 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 85/239 (35%), Gaps = 29/239 (12%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
           GS  E +  +  G+  LD  LG GG   G  + I G    GK+TL L   A       +C
Sbjct: 61  GSSVEPVHRLCVGNDELDRVLG-GGIVAGSSILIGGEPGIGKSTLMLQVFASLAGQSHSC 119

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
            +V  E ++  I AR   +++    I    T    L        +     +VIDS+  + 
Sbjct: 120 LYVSGEESVAQIRARATRLNVSEPQIKLVATSS--LSSVLNAACADNFAFLVIDSIQTMH 177

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
              EI    G  L         +        +++ + I +F+     K G +        
Sbjct: 178 DE-EIPSSPGTVLQV-------RMCAHKLIMLAKQRNIGLFLLGQITKDGAI-------A 222

Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV-KVVKNKMASPFKQVEFDIMYGEGI 276
           G   L+      L               GNQ R+ + +KN+     +   F++  G G+
Sbjct: 223 GPKTLEHLVDTVLYFEGSN---------GNQLRILRTIKNRFGPANEMGVFEMS-GSGL 271


>gi|56416476|ref|YP_153550.1| DNA repair protein RadA [Anaplasma marginale str. St. Maries]
 gi|222474845|ref|YP_002563260.1| DNA repair protein (radA) [Anaplasma marginale str. Florida]
 gi|56387708|gb|AAV86295.1| DNA repair protein [Anaplasma marginale str. St. Maries]
 gi|222418981|gb|ACM49004.1| DNA repair protein (radA) [Anaplasma marginale str. Florida]
          Length = 456

 Score = 49.8 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 85/239 (35%), Gaps = 29/239 (12%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
           GS  E +  +  G+  LD  LG GG   G  + I G    GK+TL L   A       +C
Sbjct: 65  GSSVEPVHRLCVGNDELDRVLG-GGIVAGSSILIGGEPGIGKSTLMLQVFASLAGQSHSC 123

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
            +V  E ++  I AR   +++    I    T    L        +     +VIDS+  + 
Sbjct: 124 LYVSGEESVAQIRARATRLNVSEPQIKLVATSS--LSSVLNAACADNFAFLVIDSIQTMH 181

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
              EI    G  L         +        +++ + I +F+     K G +        
Sbjct: 182 DE-EIPSSPGTVLQV-------RMCAHKLIMLAKQRNIGLFLLGQITKDGAI-------A 226

Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV-KVVKNKMASPFKQVEFDIMYGEGI 276
           G   L+      L               GNQ R+ + +KN+     +   F++  G G+
Sbjct: 227 GPKTLEHLVDTVLYFEGSN---------GNQLRILRTIKNRFGPANEMGVFEMS-GSGL 275


>gi|251780429|ref|ZP_04823349.1| DNA repair protein RadA [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243084744|gb|EES50634.1| DNA repair protein RadA [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 455

 Score = 49.8 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 7/141 (4%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E   +G   L+  LG GG  KG +  I G    GK+TL L T        G   +V  E 
Sbjct: 70  ERYDTGIRELNRVLG-GGLVKGSLTLISGDPGIGKSTLLLQTANNIALKYGKVLYVSGEE 128

Query: 106 ALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           + + I  R  +LGV+ +NL I         L+   + +     + ++IDS+  +   +  
Sbjct: 129 SEEQIKIRGDRLGVNSENLFIISETN----LDAISIYIEQINPNFVIIDSIQTVFKESVS 184

Query: 164 EGDMGESLPGMQARLMSQALR 184
                 S     +  + +  +
Sbjct: 185 SAPGSVSQVKECSNTIMRICK 205


>gi|325168815|ref|YP_004280605.1| non-specific serine/threonine protein kinase [Agrobacterium sp.
           H13-3]
 gi|325064538|gb|ADY68227.1| non-specific serine/threonine protein kinase [Agrobacterium sp.
           H13-3]
          Length = 502

 Score = 49.8 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 62/174 (35%), Gaps = 7/174 (4%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA--FVDAE 104
            +SSG    D  LG GG  +G    + GP  +GK+  AL  +  + + G   A    D E
Sbjct: 250 TLSSGLSQFDGLLG-GGVERGSSTLLIGPAGTGKSLFALQFVNAAVERGERAAVFIFDEE 308

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
             L     R +G+DL+ L   Q D      ++    +  G     V D V+    +  + 
Sbjct: 309 LGLLYARTRSMGIDLEKL---QADGHVHIEQLDAAELSPGEFAQRVRDRVSTFDAKTVVI 365

Query: 165 GDMGESLPGMQ-ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
             +      M     +   + +L   ++R              +G M    + T
Sbjct: 366 DSINGYQASMPEENALILHMHELLQYLNRQGANTFLTVAQHGLVGDMKSPVDVT 419



 Score = 43.3 bits (100), Expect = 0.053,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 92/260 (35%), Gaps = 20/260 (7%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G  GLD  L  GGF +  +  + G   +GKTT+AL  + + +  G  C ++      + 
Sbjct: 11  TGVKGLDDVLS-GGFTRRHVFLLEGSPGTGKTTIALQFLIEGEIRGERCLYISLSETDEE 69

Query: 110 IYARK------LGVDLKNLLISQPDT-----GEQALEITDMLVRSGAVDIIVIDSVAALT 158
           +          +G  ++   +  P++      +Q+L  +  L       +I         
Sbjct: 70  LRDCARSHGMEIGSGIEIFELVPPESLLDAEQQQSLLYSSDLELGETTKLIFQAFERIKP 129

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
            R  I+      L    +    + +  L    +RS   ++ ++ M  +            
Sbjct: 130 QRVVIDSLSEIRLLAQSSLRYRRQILALKHFFARSDATVLLLDDMTSENFDKTVHSVVHG 189

Query: 219 GGNALKFYSSVRLDIRRVGSIK-DKDSITG------NQTRVKVVKNKMASPFKQVEFDI- 270
             +  +       + RR+  IK    S  G       +T    V  ++ +   + EF+  
Sbjct: 190 VIHLEQLAPDYGSERRRLRVIKYRGQSFRGGYHDFTIKTGGVAVFPRLRAIEHRTEFERT 249

Query: 271 MYGEGISFFGELIDLGVKAS 290
               G+S F  L+  GV+  
Sbjct: 250 TLSSGLSQFDGLLGGGVERG 269


>gi|28899203|ref|NP_798808.1| DNA repair protein RadA [Vibrio parahaemolyticus RIMD 2210633]
 gi|153838300|ref|ZP_01990967.1| DNA repair protein RadA [Vibrio parahaemolyticus AQ3810]
 gi|260361559|ref|ZP_05774586.1| DNA repair protein RadA [Vibrio parahaemolyticus K5030]
 gi|260879101|ref|ZP_05891456.1| DNA repair protein RadA [Vibrio parahaemolyticus AN-5034]
 gi|260897771|ref|ZP_05906267.1| DNA repair protein RadA [Vibrio parahaemolyticus Peru-466]
 gi|260900829|ref|ZP_05909224.1| DNA repair protein RadA [Vibrio parahaemolyticus AQ4037]
 gi|28807427|dbj|BAC60692.1| DNA repair protein RadA [Vibrio parahaemolyticus RIMD 2210633]
 gi|149748289|gb|EDM59148.1| DNA repair protein RadA [Vibrio parahaemolyticus AQ3810]
 gi|308088970|gb|EFO38665.1| DNA repair protein RadA [Vibrio parahaemolyticus Peru-466]
 gi|308089644|gb|EFO39339.1| DNA repair protein RadA [Vibrio parahaemolyticus AN-5034]
 gi|308108178|gb|EFO45718.1| DNA repair protein RadA [Vibrio parahaemolyticus AQ4037]
 gi|308114007|gb|EFO51547.1| DNA repair protein RadA [Vibrio parahaemolyticus K5030]
 gi|328474260|gb|EGF45065.1| DNA repair protein RadA [Vibrio parahaemolyticus 10329]
          Length = 459

 Score = 49.8 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 16/170 (9%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   +SG   LD  LG GG   G  + I G   +GK+TL L T+           +V
Sbjct: 70  LQEVPRFTSGFKELDRVLG-GGVVPGAAILIGGNPGAGKSTLLLQTMCTLSGL-MPTLYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+  ++L +      ++  +I +         I+VIDS+  +  
Sbjct: 128 TGEESLQQVAMRASRLGLPKEHLKMLSETNVDKICQIAEK----EQPRIMVIDSIQVMHV 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
                     +     A  +++          +   + VFI     K G 
Sbjct: 184 SDVQSSPGSVAQVRESATALTRYA--------KQNNVAVFIVGHVTKDGT 225


>gi|134093577|ref|YP_001098652.1| protein kinase [Herminiimonas arsenicoxydans]
 gi|133737480|emb|CAL60523.1| Putative circadian clock protein KaiC [Herminiimonas
           arsenicoxydans]
          Length = 480

 Score = 49.8 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + +S G   LD  +G GG P G  + + GP  SGKT LA   +A+  + G        E 
Sbjct: 249 KRLSMGVPALDEMMG-GGLPAGYSLLLVGPSGSGKTVLATQFLAEGVRAGEPGVIAAFEK 307

Query: 106 ALDSIYARKLGVDLKNLLISQPDTG------EQALEITDMLVRSGAVDIIVIDSVAAL 157
           + + + + KL   +++  +   DT       ++ L     ++       +VIDS++  
Sbjct: 308 SPNQLLSHKLTKLVESGQVGVIDTRTLDLSIDEILHDLVAMITRMKAKRVVIDSLSGF 365


>gi|254172307|ref|ZP_04878983.1| ATPase, RecA superfamily [Thermococcus sp. AM4]
 gi|214034203|gb|EEB75029.1| ATPase, RecA superfamily [Thermococcus sp. AM4]
          Length = 237

 Score = 49.8 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 19/137 (13%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
           G I + ++ V SG  GLD  +G G  P GR+  I GP  SGKTT+ +  + +  + G   
Sbjct: 4   GEILKSLDRVPSGVPGLDEIIGGGFLP-GRVYLITGPPGSGKTTMGVQFLVEGARNGEKG 62

Query: 99  AFV----DAEHALDSIYARKLGV------------DLKNLLISQPD--TGEQALEITDML 140
            FV    D    L  +     G+            DL  +L+      T  +       +
Sbjct: 63  VFVSLVEDPRVILQDMLRYNFGLLGYVKSKTITFHDLGRILLRTEYRLTWNELFNSILQI 122

Query: 141 VRSGAVDIIVIDSVAAL 157
           +    +   VIDS  ++
Sbjct: 123 ISEEGIKRAVIDSFTSM 139


>gi|312113725|ref|YP_004011321.1| DNA repair protein RadA [Rhodomicrobium vannielii ATCC 17100]
 gi|311218854|gb|ADP70222.1| DNA repair protein RadA [Rhodomicrobium vannielii ATCC 17100]
          Length = 455

 Score = 49.8 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 91/254 (35%), Gaps = 26/254 (10%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +  +SSG   LD A+G  GF +G  V + G    GK+TL L   A   + G +  +   
Sbjct: 68  DVRRISSGIGELDRAVGD-GFAQGSAVLLSGEPGIGKSTLLLQAAAAIAEQGHSSLYFSG 126

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E A D I  R   + L    +           I   + +    D +VIDS+  L   +  
Sbjct: 127 EEATDQIRLRAQRLGLSKAPLGLVAETC-VERILATIEQGAPPDFVVIDSIQTLWTESIE 185

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
                 S      + +         +++++K  ++ +     K G +        G   +
Sbjct: 186 SAPGTVSQVRASMQAL--------IALAKTKGPVIVVVGHVTKDGQI-------AGPKVV 230

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
           +      L     G+         N   ++  KN+  +  +   FD+  G+G+       
Sbjct: 231 EHMVDTVLTFEGEGAH--------NLRLLRATKNRFGASNEIGVFDMH-GDGLREVSNPS 281

Query: 284 DLGVKASIVDKSGA 297
           +L +     D +G+
Sbjct: 282 ELFLSLDHCDAAGS 295


>gi|195953338|ref|YP_002121628.1| DNA repair protein RadA [Hydrogenobaculum sp. Y04AAS1]
 gi|195932950|gb|ACG57650.1| DNA repair protein RadA [Hydrogenobaculum sp. Y04AAS1]
          Length = 446

 Score = 49.8 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 78/221 (35%), Gaps = 13/221 (5%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD+ALG GG  KG+++ + G    GK+TL L  IA          +   E +  
Sbjct: 66  STGYKTLDMALG-GGIVKGQVILLSGEPGIGKSTLLLK-IADFMSKEHVVIYASGEESSS 123

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            I  R   +D+ +   +        +E      +      ++IDS+  +   A       
Sbjct: 124 QISIRASRMDINS--SNLYVLNSTNIEHIISCAKEYNAKALIIDSIQTMYTNALESSPGS 181

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
            +        + +          +S  I  FI     K G + G        + +  +  
Sbjct: 182 VAQVRESTFKLVEFC--------KSSAIPCFIVGHINKEGAIAGPKVLEHIVDTVCQFEG 233

Query: 229 VRLDIRRVGSI-KDKDSITGNQTRVKVVKNKMASPFKQVEF 268
            R ++ RV  I K++   TG     K+    +    +   F
Sbjct: 234 ERFNLYRVLMILKNRYGATGEMAVFKMEDRGLTEVLEPSLF 274


>gi|300918125|ref|ZP_07134737.1| DNA repair protein RadA [Escherichia coli MS 115-1]
 gi|300414709|gb|EFJ98019.1| DNA repair protein RadA [Escherichia coli MS 115-1]
          Length = 476

 Score = 49.8 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 63/163 (38%), Gaps = 10/163 (6%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 79  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 135

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 136 AQQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE----EEQPKLM 190

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
           VIDS+  +            +     A  +++  +    +I  
Sbjct: 191 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKMRGVAIVM 233


>gi|34498429|ref|NP_902644.1| DNA repair protein RadA [Chromobacterium violaceum ATCC 12472]
 gi|34104283|gb|AAQ60642.1| DNA repair protein radA [Chromobacterium violaceum ATCC 12472]
          Length = 453

 Score = 49.8 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 56/143 (39%), Gaps = 4/143 (2%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E      SG   LD  LG GG  +G +V I G    GK+TL L  ++Q  ++     +V 
Sbjct: 66  EETPRDPSGIDELDRVLG-GGIVRGAVVLIGGDPGIGKSTLLLQALSQIGRS-RKVLYVS 123

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E +   I  R   + L     S     E  +E     ++    +++VIDS+  L     
Sbjct: 124 GEESAQQIALRASRLALDT--SSVDLLAEICIENILETLKREQPEVVVIDSIQTLYTEQV 181

Query: 163 IEGDMGESLPGMQARLMSQALRK 185
                  S     A  +++  ++
Sbjct: 182 TSAPGSVSQVRECAAQLTRMAKQ 204


>gi|71409616|ref|XP_807143.1| DNA repair protein RAD51 [Trypanosoma cruzi strain CL Brener]
 gi|71652370|ref|XP_814843.1| DNA repair protein RAD51 [Trypanosoma cruzi strain CL Brener]
 gi|70871080|gb|EAN85292.1| DNA repair protein RAD51, putative [Trypanosoma cruzi]
 gi|70879851|gb|EAN92992.1| DNA repair protein RAD51, putative [Trypanosoma cruzi]
 gi|322824450|gb|EFZ29854.1| DNA repair protein RAD51, putative [Trypanosoma cruzi]
          Length = 371

 Score = 49.8 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 92/257 (35%), Gaps = 29/257 (11%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
              + I +V++GS  +D  LG G    G I E++G   +GKT L        Q       
Sbjct: 125 EARKEIIMVTTGSREVDKLLGGG-IETGGITELFGEFRTGKTQLCHTLCVTCQLPISQGG 183

Query: 94  TGGTCAFVDAEHALDSIY----ARKLGVDLKNLLISQP-------DTGEQALEITDMLVR 142
             G   ++D E           A +  +D +++L +         D  +Q L     ++ 
Sbjct: 184 AEGMALYIDTEGTFRPERLVAVAERYKLDPQDVLSNVACARAFNTDHQQQLLLQASAMMA 243

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                II++DS  AL  R +  G    +   M      ++L  L      +  +   +  
Sbjct: 244 ENRFAIIIVDSATALY-RTDYSGRNELAARQMHLGKFLRSLHNLAEEYGVAVVVTNQVVA 302

Query: 203 MRMKIGVMFGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
                  MF +  +   GG+ +   S+ RL +R+           G Q  +KV  +   +
Sbjct: 303 NVDGSAQMFQADAKKPIGGHIMAHASTTRLSLRKGR---------GEQRIMKVYDSPCLA 353

Query: 262 PFKQVEFDIMYGEGISF 278
             + +      G G + 
Sbjct: 354 EAEAIFGIYEDGVGDAR 370


>gi|218883354|ref|YP_002427736.1| putative circadian clock protein, KaiC [Desulfurococcus
           kamchatkensis 1221n]
 gi|218764970|gb|ACL10369.1| putative circadian clock protein, KaiC [Desulfurococcus
           kamchatkensis 1221n]
          Length = 262

 Score = 49.8 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 3/81 (3%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            + SG  GLD  +  GG P+G +V + G   +GKT +++  I++    G    +V  E +
Sbjct: 3   RIPSGIPGLDELI-EGGIPRGFMVALVGEPGTGKTAMSIQFISKGLLEGDKAIYVTTEES 61

Query: 107 LDSI--YARKLGVDLKNLLIS 125
            +SI   +++ GVDLK  +  
Sbjct: 62  RESIISQSKRFGVDLKPYIDE 82


>gi|77463013|ref|YP_352517.1| DNA repair protein RadA [Rhodobacter sphaeroides 2.4.1]
 gi|77387431|gb|ABA78616.1| DNA Repair Protein [Rhodobacter sphaeroides 2.4.1]
          Length = 452

 Score = 49.8 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 53/162 (32%), Gaps = 4/162 (2%)

Query: 25  RVYG-KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           +  G KG  + L    +        SSG   LD  LG G  P   I+ + G    GK+TL
Sbjct: 44  KALGSKGRTIALSDLATEEAAPPRTSSGIDELDRVLGGGLVPASAIL-VGGDPGIGKSTL 102

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L   A     G  C ++  E A   +  R   + L           E  L      + +
Sbjct: 103 LLQAAASFANGGVKCLYISGEEAAAQVRMRAQRLGLGQ--APVALGAETNLRDILTTLDA 160

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
               + +IDS+  +            +     A  +    ++
Sbjct: 161 ERPALAIIDSIQTMWLDNVESAPGSVAQVRASAHELVTFAKR 202


>gi|126461887|ref|YP_001043001.1| DNA repair protein RadA [Rhodobacter sphaeroides ATCC 17029]
 gi|126103551|gb|ABN76229.1| DNA repair protein RadA [Rhodobacter sphaeroides ATCC 17029]
          Length = 452

 Score = 49.8 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 53/162 (32%), Gaps = 4/162 (2%)

Query: 25  RVYG-KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           +  G KG  + L    +        SSG   LD  LG G  P   I+ + G    GK+TL
Sbjct: 44  KALGSKGRTIALSDLATEEAAPPRTSSGIDELDRVLGGGLVPASAIL-VGGDPGIGKSTL 102

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L   A     G  C ++  E A   +  R   + L           E  L      + +
Sbjct: 103 LLQAAASFANGGVKCLYISGEEAAAQVRMRAQRLGLGQ--APVALGAETNLRDILTTLDA 160

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
               + +IDS+  +            +     A  +    ++
Sbjct: 161 ERPALAIIDSIQTMWLDNVESAPGSVAQVRASAHELVTFAKR 202


>gi|312963158|ref|ZP_07777643.1| DNA repair protein RadA/Sms [Pseudomonas fluorescens WH6]
 gi|311282669|gb|EFQ61265.1| DNA repair protein RadA/Sms [Pseudomonas fluorescens WH6]
          Length = 455

 Score = 49.8 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 57/146 (39%), Gaps = 8/146 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I   S+ S  LD  LG GG   G +V I G    GK+T+ L T+           +V
Sbjct: 67  VEEIPRFSTASGELDRVLG-GGLVDGSVVLIGGDPGIGKSTILLQTLCSIASR-MPALYV 124

Query: 102 DAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +   +   AR+LG+    L +      E  +E      R     ++VIDS+  +  
Sbjct: 125 TGEESQQQVAMRARRLGLPQDQLRVMT----ETCIESIIATARIEKPKVMVIDSIQTIFT 180

Query: 160 RAEIEGDMGESLPGMQARLMSQALRK 185
                   G S     A L+ +  ++
Sbjct: 181 EQLQSAPGGVSQVRESAALLVRYAKQ 206


>gi|255325863|ref|ZP_05366955.1| DNA repair protein RadA [Corynebacterium tuberculostearicum SK141]
 gi|255297075|gb|EET76400.1| DNA repair protein RadA [Corynebacterium tuberculostearicum SK141]
          Length = 456

 Score = 49.8 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 3/116 (2%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           +  + V +G   LD  LG G  P G +V + G    GK+TL L   ++  + G T  +  
Sbjct: 70  QATKTVRTGIGELDRVLGTGIVP-GSVVLMAGEPGVGKSTLLLEVASRWAQLGRTVLYAT 128

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AE +   + +R        L  S     E  L+     V      +I++DSV  + 
Sbjct: 129 AEESAGQVRSRA--ERTGALQESLYLAAESNLDAVFGHVDKLKPSLIIVDSVQTMH 182


>gi|229592717|ref|YP_002874836.1| DNA repair protein RadA [Pseudomonas fluorescens SBW25]
 gi|229364583|emb|CAY52472.1| DNA repair protein [Pseudomonas fluorescens SBW25]
          Length = 455

 Score = 49.8 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 57/146 (39%), Gaps = 8/146 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I   S+ S  LD  LG GG   G +V I G    GK+T+ L T+           +V
Sbjct: 67  VEEIPRFSTASGELDRVLG-GGLVDGSVVLIGGDPGIGKSTILLQTLCSIASR-MPALYV 124

Query: 102 DAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +   +   AR+LG+    L +      E  +E      R     ++VIDS+  +  
Sbjct: 125 TGEESQQQVAMRARRLGLPQDQLRVMT----ETCIESIIATARIEKPKVMVIDSIQTIFT 180

Query: 160 RAEIEGDMGESLPGMQARLMSQALRK 185
                   G S     A L+ +  ++
Sbjct: 181 EQLQSAPGGVSQVRESAALLVRYAKQ 206


>gi|311740173|ref|ZP_07714005.1| DNA repair protein RadA [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311304728|gb|EFQ80799.1| DNA repair protein RadA [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 423

 Score = 49.8 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 3/116 (2%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           +  + V +G   LD  LG G  P G +V + G    GK+TL L   ++  + G T  +  
Sbjct: 37  QATKTVRTGIGELDRVLGTGIVP-GSVVLMAGEPGVGKSTLLLEVASRWAQLGRTVLYAT 95

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AE +   + +R        L  S     E  L+     V      +I++DSV  + 
Sbjct: 96  AEESAGQVRSRA--ERTGALQESLYLAAESNLDAVFGHVDKLKPSLIIVDSVQTMH 149


>gi|209944562|gb|ACI96512.1| spindle D [Drosophila simulans]
          Length = 205

 Score = 49.8 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 8/117 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           + +G+  LD   G GG   G +VE+ G   +GKT + L      Q         G+  F+
Sbjct: 39  ILTGNKALDTHFG-GGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFI 97

Query: 102 DAEHALDSIYARKLGVDLKNLLISQ-PDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           D            L + L+     + P+     +      VR   +D ++   ++  
Sbjct: 98  DTRQDFHPDRLMGLALKLERQYAPRVPEFKAHKMLQKIHYVRCPKLDQLMATVLSCH 154


>gi|332017004|gb|EGI57803.1| DNA repair protein XRCC3 [Acromyrmex echinatior]
          Length = 247

 Score = 49.8 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 70/200 (35%), Gaps = 26/200 (13%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCA 99
           + +++G   LD  LG GG P   I ++YG   +GKT LAL      Q        G    
Sbjct: 9   KFLTTGCSRLDAKLG-GGIPCRGITQLYGAAGTGKTQLALQLCLTVQLPITAGGLGAGAI 67

Query: 100 FVDAEHALDSIYARKLGVDL----------KNLLISQPDTGEQ---ALEITDMLVRSGAV 146
           ++  E A  S   ++L                +L+    T E+    L+    ++ +   
Sbjct: 68  YICTETAFPSKRLQQLLTKSEIAKTHFVNGDVILVGHIATSEELVLCLQHRVPVLMNTRK 127

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
             ++I    A   R E   D  + L     R + + L +L          ++ INQ+   
Sbjct: 128 IGLLIIDSIAAPYRIE---DWNDVLQCKTKRSIGRQLHEL---CKNDDLCVICINQVSAV 181

Query: 207 IGVMFGSPETTTGGNALKFY 226
           I       E      AL   
Sbjct: 182 IDGHRLISEGANEQPALGLA 201


>gi|319897265|ref|YP_004135460.1| repair protein [Haemophilus influenzae F3031]
 gi|317432769|emb|CBY81134.1| predicted repair protein [Haemophilus influenzae F3031]
          Length = 458

 Score = 49.8 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +     SSG   LD  LG GG   G  + I G   +GK+TL L  +        T  +V
Sbjct: 69  LQETPRFSSGFSELDRVLG-GGIVPGSAILIGGHPGAGKSTLLLQVMCGLA-KNMTALYV 126

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+    L +    + EQ   + D L       IIV+DS+  +  
Sbjct: 127 TGEESLQQVAMRASRLGLPNDQLKMLSETSVEQICNLADQLKPQ----IIVVDSIQVMHL 182

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     +     A  +++  +    +I  
Sbjct: 183 ADIQSSPGSVAQVRECASFLTRYAKTRQVAIIM 215


>gi|260582196|ref|ZP_05849990.1| DNA repair protein RadA [Haemophilus influenzae NT127]
 gi|260094828|gb|EEW78722.1| DNA repair protein RadA [Haemophilus influenzae NT127]
          Length = 458

 Score = 49.8 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +     SSG   LD  LG GG   G  + I G   +GK+TL L  +        T  +V
Sbjct: 69  LQETPRFSSGFSELDRVLG-GGIVPGSAILIGGHPGAGKSTLLLQVMCGLA-KNMTALYV 126

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+    L +    + EQ   + D L       IIV+DS+  +  
Sbjct: 127 TGEESLQQVAMRASRLGLPNDQLKMLSETSVEQICNLADQLKPQ----IIVVDSIQVMHL 182

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     +     A  +++  +    +I  
Sbjct: 183 ADIQSSPGSVAQVRECASFLTRYAKTRQVAIIM 215


>gi|163783924|ref|ZP_02178896.1| ATP-dependent protease sms [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880809|gb|EDP74341.1| ATP-dependent protease sms [Hydrogenivirga sp. 128-5-R1-1]
          Length = 449

 Score = 49.8 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 77/226 (34%), Gaps = 10/226 (4%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +S+    LD ALG GG   G+++ I G    GK+TL L       + G    +   E 
Sbjct: 67  ERISTNIKNLDEALG-GGIVPGQVILISGEPGIGKSTLLLQLANNLAQDGKKVLYATGEE 125

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           + + IY R  G  ++ L  +     +   +     +     D I++DSV  +   +E+E 
Sbjct: 126 SANQIYLR--GERIRALNENIFILADTNFDNILDAIDKINPDFIILDSVQTVYS-SELES 182

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
             G          +     KLT    +     V I Q+  +  +               F
Sbjct: 183 AAG------SVSQVKYVSSKLTEIAKQRNIPTVLIGQVTKEGNLAGPKVLEHLVDTVANF 236

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
                   R +  IK++    G      +    +        F +M
Sbjct: 237 EGERGHAYRVLKLIKNRFGAAGEIAVFNMTSKGLEEVNDPSSFFLM 282


>gi|293348271|ref|XP_002726823.1| PREDICTED: rCG27697-like [Rattus norvegicus]
 gi|293360114|ref|XP_002729772.1| PREDICTED: rCG27697-like [Rattus norvegicus]
 gi|149044063|gb|EDL97445.1| rCG27697 [Rattus norvegicus]
          Length = 345

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-- 94
            + S  E  + +S G   LD  LG GG P   I  + G  S+GKT LAL      Q    
Sbjct: 71  QRESFPEQHQRLSLGCPVLDQFLG-GGLPLEGITGLAGRSSAGKTQLALQLCLAVQFPRQ 129

Query: 95  -GGT---CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
            GG      ++  E A  S    +L   L+ L    P    Q +   + +    A D+
Sbjct: 130 YGGLEAGAVYICTEDAFPSKRLWQLIEQLQELRTDVPGEVTQKIRFGNHIFIEHAADV 187


>gi|120406290|ref|YP_956119.1| DNA repair protein RadA [Mycobacterium vanbaalenii PYR-1]
 gi|119959108|gb|ABM16113.1| DNA repair protein RadA [Mycobacterium vanbaalenii PYR-1]
          Length = 462

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 49/141 (34%), Gaps = 4/141 (2%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   LD  LG GG   G +  + G    GK+TL L    +   TG    ++  E +   
Sbjct: 76  TGISELDRVLG-GGLVPGSVTLLAGDPGVGKSTLLLEVAHRWASTGRRALYLSGEESAGQ 134

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           I  R       +  +      +  L+     + +    ++V+DSV  ++   E +G  G 
Sbjct: 135 IRLRAERTGCSHDEVYLAAESD--LQTALGHIDAVQPTLVVVDSVQTMST-TEADGVTGG 191

Query: 170 SLPGMQARLMSQALRKLTSSI 190
                          K T   
Sbjct: 192 VTQVRAVTTALTMTAKTTGVA 212


>gi|126437692|ref|YP_001073383.1| DNA repair protein RadA [Mycobacterium sp. JLS]
 gi|126237492|gb|ABO00893.1| DNA repair protein RadA [Mycobacterium sp. JLS]
          Length = 466

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 55/159 (34%), Gaps = 7/159 (4%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   LD  LG GG   G +  + G    GK+TL L    +   +G    ++  E +   
Sbjct: 73  TGISELDRVLG-GGLVPGSVTLLAGDPGVGKSTLLLEVAHRWAVSGRRALYLTGEESAGQ 131

Query: 110 I--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           +   A + G     L ++       AL      + +    ++V+DSV  ++         
Sbjct: 132 VRLRAERTGCTHDELYLAAESDLPTAL----GHIDAVQPSLVVVDSVQTMSTSENDGVTG 187

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G +        ++Q  +            +V +  +   
Sbjct: 188 GVTQVRAVTTALTQYAKGAAGPGGPGGIAMVLVGHVTKD 226


>gi|108801705|ref|YP_641902.1| DNA repair protein RadA [Mycobacterium sp. MCS]
 gi|119870856|ref|YP_940808.1| DNA repair protein RadA [Mycobacterium sp. KMS]
 gi|108772124|gb|ABG10846.1| DNA repair protein RadA [Mycobacterium sp. MCS]
 gi|119696945|gb|ABL94018.1| DNA repair protein RadA [Mycobacterium sp. KMS]
          Length = 466

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 55/159 (34%), Gaps = 7/159 (4%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   LD  LG GG   G +  + G    GK+TL L    +   +G    ++  E +   
Sbjct: 73  TGISELDRVLG-GGLVPGSVTLLAGDPGVGKSTLLLEVAHRWAVSGRRALYLTGEESAGQ 131

Query: 110 I--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           +   A + G     L ++       AL      + +    ++V+DSV  ++         
Sbjct: 132 VRLRAERTGCTHDELYLAAESDLPTAL----GHIDAVQPSLVVVDSVQTMSTSENDGVTG 187

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           G +        ++Q  +            +V +  +   
Sbjct: 188 GVTQVRAVTTALTQYAKGAAGPGGPGGIAMVLVGHVTKD 226


>gi|324118342|gb|EGC12236.1| DNA repair protein RadA [Escherichia coli E1167]
          Length = 460

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 10/155 (6%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 63  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 120 AQQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE----EEQPKLM 174

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           VIDS+  +            +     A  +++  +
Sbjct: 175 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAK 209


>gi|323171404|gb|EFZ57051.1| DNA repair protein RadA [Escherichia coli LT-68]
          Length = 460

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 10/155 (6%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 63  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 120 AQQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE----EEQPKLM 174

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           VIDS+  +            +     A  +++  +
Sbjct: 175 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAK 209


>gi|315298382|gb|EFU57637.1| DNA repair protein RadA [Escherichia coli MS 16-3]
          Length = 476

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 10/155 (6%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 79  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 135

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 136 AQQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE----EEQPKLM 190

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           VIDS+  +            +     A  +++  +
Sbjct: 191 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAK 225


>gi|301330255|ref|ZP_07222913.1| DNA repair protein RadA [Escherichia coli MS 78-1]
 gi|301646909|ref|ZP_07246754.1| DNA repair protein RadA [Escherichia coli MS 146-1]
 gi|331640432|ref|ZP_08341580.1| DNA repair protein RadA [Escherichia coli H736]
 gi|300843761|gb|EFK71521.1| DNA repair protein RadA [Escherichia coli MS 78-1]
 gi|301074897|gb|EFK89703.1| DNA repair protein RadA [Escherichia coli MS 146-1]
 gi|331040178|gb|EGI12385.1| DNA repair protein RadA [Escherichia coli H736]
          Length = 476

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 10/155 (6%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 79  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 135

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 136 AQQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE----EEQPKLM 190

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           VIDS+  +            +     A  +++  +
Sbjct: 191 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAK 225


>gi|300939378|ref|ZP_07154045.1| DNA repair protein RadA [Escherichia coli MS 21-1]
 gi|300455724|gb|EFK19217.1| DNA repair protein RadA [Escherichia coli MS 21-1]
          Length = 476

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 10/155 (6%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 79  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 135

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 136 AQQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE----EEQPKLM 190

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           VIDS+  +            +     A  +++  +
Sbjct: 191 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAK 225


>gi|301024941|ref|ZP_07188553.1| DNA repair protein RadA [Escherichia coli MS 69-1]
 gi|300396316|gb|EFJ79854.1| DNA repair protein RadA [Escherichia coli MS 69-1]
          Length = 476

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 10/155 (6%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 79  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 135

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 136 AQQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE----EEQPKLM 190

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           VIDS+  +            +     A  +++  +
Sbjct: 191 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAK 225


>gi|300896740|ref|ZP_07115246.1| DNA repair protein RadA [Escherichia coli MS 198-1]
 gi|300359396|gb|EFJ75266.1| DNA repair protein RadA [Escherichia coli MS 198-1]
          Length = 476

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 10/155 (6%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 79  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 135

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 136 AQQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE----EEQPKLM 190

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           VIDS+  +            +     A  +++  +
Sbjct: 191 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAK 225


>gi|300983971|ref|ZP_07176822.1| DNA repair protein RadA [Escherichia coli MS 200-1]
 gi|300306805|gb|EFJ61325.1| DNA repair protein RadA [Escherichia coli MS 200-1]
 gi|324012397|gb|EGB81616.1| DNA repair protein RadA [Escherichia coli MS 60-1]
          Length = 476

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 10/155 (6%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 79  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 135

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 136 AQQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE----EEQPKLM 190

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           VIDS+  +            +     A  +++  +
Sbjct: 191 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAK 225


>gi|297520275|ref|ZP_06938661.1| DNA repair protein RadA [Escherichia coli OP50]
          Length = 306

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 10/155 (6%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 63  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 120 AQQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE----EEQPKLM 174

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           VIDS+  +            +     A  +++  +
Sbjct: 175 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAK 209


>gi|260578405|ref|ZP_05846319.1| DNA repair protein RadA [Corynebacterium jeikeium ATCC 43734]
 gi|258603427|gb|EEW16690.1| DNA repair protein RadA [Corynebacterium jeikeium ATCC 43734]
          Length = 477

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 60/185 (32%), Gaps = 18/185 (9%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +G   LD  LG GG   G  V + G    GK+TL L   A   K G T   + AE ++ 
Sbjct: 93  PTGIGELDRVLG-GGIVPGSAVLLAGEPGVGKSTLLLEVAAAWAKKGHTVLILTAEESVG 151

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +  R        L        E  LE     V +   ++I++DS+  +          G
Sbjct: 152 QVRHRA--ERTGALHDKLYLASENDLENGLAQVDALNPELIIVDSLQTM-------QATG 202

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
                            LT+    S   ++ +  +            T  G   ++    
Sbjct: 203 VEGVAGGVAQTRAVTSTLTTLAKMSGTPVIAVGHVT--------KEGTVAGPRTIEHLVD 254

Query: 229 VRLDI 233
           V L+ 
Sbjct: 255 VVLNF 259


>gi|218703137|ref|YP_002410766.1| DNA repair protein RadA [Escherichia coli IAI39]
 gi|256025308|ref|ZP_05439173.1| DNA repair protein RadA [Escherichia sp. 4_1_40B]
 gi|218373123|emb|CAR21017.1| repair protein radA homolog [Escherichia coli IAI39]
          Length = 460

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 10/155 (6%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 63  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 120 AQQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE----EEQPKLM 174

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           VIDS+  +            +     A  +++  +
Sbjct: 175 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAK 209


>gi|209944564|gb|ACI96513.1| spindle D [Drosophila simulans]
          Length = 212

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 8/117 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           + +G+  LD   G GG   G +VE+ G   +GKT + L      Q         G+  F+
Sbjct: 46  ILTGNKALDTHFG-GGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFI 104

Query: 102 DAEHALDSIYARKLGVDLKNLLISQ-PDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           D            L + L+     + P+     +      VR   +D ++   ++  
Sbjct: 105 DTRQDFHPDRLMGLALKLEKQYAPRVPEFKAHKMLQKIHYVRCPKLDQLMATVLSCH 161


>gi|170768448|ref|ZP_02902901.1| DNA repair protein RadA [Escherichia albertii TW07627]
 gi|307136589|ref|ZP_07495945.1| DNA repair protein RadA [Escherichia coli H736]
 gi|312966105|ref|ZP_07780331.1| DNA repair protein RadA [Escherichia coli 2362-75]
 gi|170122552|gb|EDS91483.1| DNA repair protein RadA [Escherichia albertii TW07627]
 gi|312289348|gb|EFR17242.1| DNA repair protein RadA [Escherichia coli 2362-75]
          Length = 460

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 10/155 (6%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 63  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 120 AQQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE----EEQPKLM 174

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           VIDS+  +            +     A  +++  +
Sbjct: 175 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAK 209


>gi|161986626|ref|YP_250075.2| DNA repair protein RadA [Corynebacterium jeikeium K411]
          Length = 478

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 60/185 (32%), Gaps = 18/185 (9%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +G   LD  LG GG   G  V + G    GK+TL L   A   K G T   + AE ++ 
Sbjct: 95  PTGIGELDRVLG-GGIVPGSAVLLAGEPGVGKSTLLLEVAAAWAKKGHTVLILTAEESVG 153

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +  R        L        E  LE     V +   ++I++DS+  +          G
Sbjct: 154 QVRHRA--ERTGALHDKLYLASENDLENGLAQVDALNPELIIVDSLQTM-------QATG 204

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
                            LT+    S   ++ +  +            T  G   ++    
Sbjct: 205 VEGVAGGVAQTRAVTSTLTTLAKMSGTPVIAVGHVT--------KEGTVAGPRTIEHLVD 256

Query: 229 VRLDI 233
           V L+ 
Sbjct: 257 VVLNF 261


>gi|237704125|ref|ZP_04534606.1| DNA repair protein radA [Escherichia sp. 3_2_53FAA]
 gi|300816016|ref|ZP_07096239.1| DNA repair protein RadA [Escherichia coli MS 107-1]
 gi|300824428|ref|ZP_07104541.1| DNA repair protein RadA [Escherichia coli MS 119-7]
 gi|300905379|ref|ZP_07123148.1| DNA repair protein RadA [Escherichia coli MS 84-1]
 gi|300923524|ref|ZP_07139559.1| DNA repair protein RadA [Escherichia coli MS 182-1]
 gi|300930645|ref|ZP_07146034.1| DNA repair protein RadA [Escherichia coli MS 187-1]
 gi|301303493|ref|ZP_07209616.1| DNA repair protein RadA [Escherichia coli MS 124-1]
 gi|309795666|ref|ZP_07690082.1| DNA repair protein RadA [Escherichia coli MS 145-7]
 gi|331650876|ref|ZP_08351904.1| DNA repair protein RadA [Escherichia coli M718]
 gi|331680554|ref|ZP_08381213.1| DNA repair protein RadA [Escherichia coli H591]
 gi|226902037|gb|EEH88296.1| DNA repair protein radA [Escherichia sp. 3_2_53FAA]
 gi|300402748|gb|EFJ86286.1| DNA repair protein RadA [Escherichia coli MS 84-1]
 gi|300420198|gb|EFK03509.1| DNA repair protein RadA [Escherichia coli MS 182-1]
 gi|300461496|gb|EFK24989.1| DNA repair protein RadA [Escherichia coli MS 187-1]
 gi|300523070|gb|EFK44139.1| DNA repair protein RadA [Escherichia coli MS 119-7]
 gi|300531223|gb|EFK52285.1| DNA repair protein RadA [Escherichia coli MS 107-1]
 gi|300841220|gb|EFK68980.1| DNA repair protein RadA [Escherichia coli MS 124-1]
 gi|308120790|gb|EFO58052.1| DNA repair protein RadA [Escherichia coli MS 145-7]
 gi|315255749|gb|EFU35717.1| DNA repair protein RadA [Escherichia coli MS 85-1]
 gi|315284982|gb|EFU44427.1| DNA repair protein RadA [Escherichia coli MS 110-3]
 gi|324019823|gb|EGB89042.1| DNA repair protein RadA [Escherichia coli MS 117-3]
 gi|331051330|gb|EGI23379.1| DNA repair protein RadA [Escherichia coli M718]
 gi|331072017|gb|EGI43353.1| DNA repair protein RadA [Escherichia coli H591]
 gi|332103682|gb|EGJ07028.1| DNA repair protein radA [Shigella sp. D9]
          Length = 476

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 10/155 (6%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 79  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 135

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 136 AQQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE----EEQPKLM 190

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           VIDS+  +            +     A  +++  +
Sbjct: 191 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAK 225


>gi|30065626|ref|NP_839797.1| DNA repair protein RadA [Shigella flexneri 2a str. 2457T]
 gi|56480612|ref|NP_710128.2| DNA repair protein RadA [Shigella flexneri 2a str. 301]
 gi|110808177|ref|YP_691697.1| DNA repair protein RadA [Shigella flexneri 5 str. 8401]
 gi|30043890|gb|AAP19609.1| probable ATP-dependent protease [Shigella flexneri 2a str. 2457T]
 gi|56384163|gb|AAN45835.2| probable ATP-dependent protease [Shigella flexneri 2a str. 301]
 gi|110617725|gb|ABF06392.1| probable ATP-dependent protease [Shigella flexneri 5 str. 8401]
 gi|281603726|gb|ADA76710.1| DNA repair protein radA [Shigella flexneri 2002017]
 gi|313646253|gb|EFS10715.1| DNA repair protein RadA [Shigella flexneri 2a str. 2457T]
          Length = 460

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 10/155 (6%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 63  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 120 AQQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE----EEQPKLM 174

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           VIDS+  +            +     A  +++  +
Sbjct: 175 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAK 209


>gi|26251280|ref|NP_757320.1| DNA repair protein RadA [Escherichia coli CFT073]
 gi|91214105|ref|YP_544091.1| DNA repair protein RadA [Escherichia coli UTI89]
 gi|254037400|ref|ZP_04871477.1| DNA repair protein radA [Escherichia sp. 1_1_43]
 gi|300980829|ref|ZP_07175210.1| DNA repair protein RadA [Escherichia coli MS 45-1]
 gi|301048358|ref|ZP_07195387.1| DNA repair protein RadA [Escherichia coli MS 185-1]
 gi|331671507|ref|ZP_08372305.1| DNA repair protein RadA [Escherichia coli TA280]
 gi|26111713|gb|AAN83894.1|AE016772_72 DNA repair protein radA [Escherichia coli CFT073]
 gi|91075679|gb|ABE10560.1| DNA repair protein RadA [Escherichia coli UTI89]
 gi|226840506|gb|EEH72508.1| DNA repair protein radA [Escherichia sp. 1_1_43]
 gi|300299775|gb|EFJ56160.1| DNA repair protein RadA [Escherichia coli MS 185-1]
 gi|300409146|gb|EFJ92684.1| DNA repair protein RadA [Escherichia coli MS 45-1]
 gi|315293318|gb|EFU52670.1| DNA repair protein RadA [Escherichia coli MS 153-1]
 gi|331071352|gb|EGI42709.1| DNA repair protein RadA [Escherichia coli TA280]
          Length = 476

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 10/155 (6%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 79  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 135

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 136 AQQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE----EEQPKLM 190

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           VIDS+  +            +     A  +++  +
Sbjct: 191 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAK 225


>gi|15804960|ref|NP_291002.1| DNA repair protein RadA [Escherichia coli O157:H7 EDL933]
 gi|12519418|gb|AAG59569.1|AE005670_2 probable ATP-dependent protease [Escherichia coli O157:H7 str.
           EDL933]
          Length = 460

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 10/155 (6%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 63  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 120 AQQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE----EEQPKLM 174

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           VIDS+  +            +     A  +++  +
Sbjct: 175 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAK 209


>gi|68262969|emb|CAI36457.1| DNA repair protein RadA [Corynebacterium jeikeium K411]
          Length = 454

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 60/185 (32%), Gaps = 18/185 (9%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +G   LD  LG GG   G  V + G    GK+TL L   A   K G T   + AE ++ 
Sbjct: 71  PTGIGELDRVLG-GGIVPGSAVLLAGEPGVGKSTLLLEVAAAWAKKGHTVLILTAEESVG 129

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +  R        L        E  LE     V +   ++I++DS+  +          G
Sbjct: 130 QVRHRA--ERTGALHDKLYLASENDLENGLAQVDALNPELIIVDSLQTM-------QATG 180

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
                            LT+    S   ++ +  +            T  G   ++    
Sbjct: 181 VEGVAGGVAQTRAVTSTLTTLAKMSGTPVIAVGHVT--------KEGTVAGPRTIEHLVD 232

Query: 229 VRLDI 233
           V L+ 
Sbjct: 233 VVLNF 237


>gi|16132206|ref|NP_418806.1| DNA repair protein [Escherichia coli str. K-12 substr. MG1655]
 gi|89111097|ref|AP_004877.1| predicted repair protein [Escherichia coli str. K-12 substr. W3110]
 gi|170083775|ref|YP_001733095.1| repair protein [Escherichia coli str. K-12 substr. DH10B]
 gi|238903476|ref|YP_002929272.1| putative repair protein [Escherichia coli BW2952]
 gi|312970082|ref|ZP_07784264.1| DNA repair protein RadA [Escherichia coli 1827-70]
 gi|134579|sp|P24554|RADA_ECOLI RecName: Full=DNA repair protein RadA; AltName: Full=DNA repair
           protein Sms
 gi|537229|gb|AAA97285.1| sms [Escherichia coli str. K-12 substr. MG1655]
 gi|581233|emb|CAA44856.1| sms [Escherichia coli K-12]
 gi|1401238|gb|AAC44380.1| RadA [Escherichia coli]
 gi|1790850|gb|AAC77342.1| DNA repair protein [Escherichia coli str. K-12 substr. MG1655]
 gi|85677128|dbj|BAE78378.1| predicted repair protein [Escherichia coli str. K12 substr. W3110]
 gi|169891610|gb|ACB05317.1| predicted repair protein [Escherichia coli str. K-12 substr. DH10B]
 gi|238863076|gb|ACR65074.1| predicted repair protein [Escherichia coli BW2952]
 gi|260450800|gb|ACX41222.1| DNA repair protein RadA [Escherichia coli DH1]
 gi|310337580|gb|EFQ02691.1| DNA repair protein RadA [Escherichia coli 1827-70]
 gi|315138942|dbj|BAJ46101.1| DNA repair protein radA [Escherichia coli DH1]
          Length = 460

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 10/155 (6%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 63  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 120 AQQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE----EEQPKLM 174

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           VIDS+  +            +     A  +++  +
Sbjct: 175 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAK 209


>gi|110644826|ref|YP_672556.1| DNA repair protein RadA [Escherichia coli 536]
 gi|191173204|ref|ZP_03034736.1| DNA repair protein RadA [Escherichia coli F11]
 gi|110346418|gb|ABG72655.1| DNA repair protein RadA [Escherichia coli 536]
 gi|190906589|gb|EDV66196.1| DNA repair protein RadA [Escherichia coli F11]
          Length = 460

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 10/155 (6%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 63  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 120 AQQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE----EEQPKLM 174

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           VIDS+  +            +     A  +++  +
Sbjct: 175 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAK 209


>gi|15834601|ref|NP_313374.1| DNA repair protein RadA [Escherichia coli O157:H7 str. Sakai]
 gi|74314823|ref|YP_313242.1| DNA repair protein RadA [Shigella sonnei Ss046]
 gi|82546740|ref|YP_410687.1| DNA repair protein RadA [Shigella boydii Sb227]
 gi|82779641|ref|YP_405990.1| DNA repair protein RadA [Shigella dysenteriae Sd197]
 gi|117626747|ref|YP_860070.1| DNA repair protein RadA [Escherichia coli APEC O1]
 gi|157158867|ref|YP_001465910.1| DNA repair protein RadA [Escherichia coli E24377A]
 gi|157163836|ref|YP_001461154.1| DNA repair protein RadA [Escherichia coli HS]
 gi|168750973|ref|ZP_02775995.1| DNA repair protein RadA [Escherichia coli O157:H7 str. EC4113]
 gi|168756808|ref|ZP_02781815.1| DNA repair protein RadA [Escherichia coli O157:H7 str. EC4401]
 gi|168762742|ref|ZP_02787749.1| DNA repair protein RadA [Escherichia coli O157:H7 str. EC4501]
 gi|168766671|ref|ZP_02791678.1| DNA repair protein RadA [Escherichia coli O157:H7 str. EC4486]
 gi|168776632|ref|ZP_02801639.1| DNA repair protein RadA [Escherichia coli O157:H7 str. EC4196]
 gi|168781679|ref|ZP_02806686.1| DNA repair protein RadA [Escherichia coli O157:H7 str. EC4076]
 gi|168785033|ref|ZP_02810040.1| DNA repair protein RadA [Escherichia coli O157:H7 str. EC869]
 gi|168797962|ref|ZP_02822969.1| DNA repair protein RadA [Escherichia coli O157:H7 str. EC508]
 gi|170021651|ref|YP_001726605.1| DNA repair protein RadA [Escherichia coli ATCC 8739]
 gi|170681066|ref|YP_001746845.1| DNA repair protein RadA [Escherichia coli SMS-3-5]
 gi|187731106|ref|YP_001883052.1| DNA repair protein RadA [Shigella boydii CDC 3083-94]
 gi|188495425|ref|ZP_03002695.1| DNA repair protein RadA [Escherichia coli 53638]
 gi|191167424|ref|ZP_03029239.1| DNA repair protein RadA [Escherichia coli B7A]
 gi|193065638|ref|ZP_03046704.1| DNA repair protein RadA [Escherichia coli E22]
 gi|193070624|ref|ZP_03051562.1| DNA repair protein RadA [Escherichia coli E110019]
 gi|194429172|ref|ZP_03061701.1| DNA repair protein RadA [Escherichia coli B171]
 gi|194439297|ref|ZP_03071376.1| DNA repair protein RadA [Escherichia coli 101-1]
 gi|195937659|ref|ZP_03083041.1| DNA repair protein RadA [Escherichia coli O157:H7 str. EC4024]
 gi|208808202|ref|ZP_03250539.1| DNA repair protein RadA [Escherichia coli O157:H7 str. EC4206]
 gi|208813276|ref|ZP_03254605.1| DNA repair protein RadA [Escherichia coli O157:H7 str. EC4045]
 gi|208819642|ref|ZP_03259962.1| DNA repair protein RadA [Escherichia coli O157:H7 str. EC4042]
 gi|209397317|ref|YP_002273909.1| DNA repair protein RadA [Escherichia coli O157:H7 str. EC4115]
 gi|209921855|ref|YP_002295939.1| DNA repair protein RadA [Escherichia coli SE11]
 gi|217325529|ref|ZP_03441613.1| DNA repair protein RadA [Escherichia coli O157:H7 str. TW14588]
 gi|218551691|ref|YP_002385483.1| DNA repair protein RadA [Escherichia fergusonii ATCC 35469]
 gi|218556923|ref|YP_002389837.1| DNA repair protein RadA [Escherichia coli IAI1]
 gi|218561620|ref|YP_002394533.1| DNA repair protein RadA [Escherichia coli S88]
 gi|218698225|ref|YP_002405892.1| DNA repair protein RadA [Escherichia coli 55989]
 gi|218708067|ref|YP_002415586.1| DNA repair protein RadA [Escherichia coli UMN026]
 gi|227885122|ref|ZP_04002927.1| DNA repair protein RadA [Escherichia coli 83972]
 gi|253774981|ref|YP_003037812.1| DNA repair protein RadA [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254164315|ref|YP_003047425.1| DNA repair protein RadA [Escherichia coli B str. REL606]
 gi|254796384|ref|YP_003081221.1| DNA repair protein RadA [Escherichia coli O157:H7 str. TW14359]
 gi|256020167|ref|ZP_05434032.1| DNA repair protein RadA [Shigella sp. D9]
 gi|260847279|ref|YP_003225057.1| putative repair protein RadA [Escherichia coli O103:H2 str. 12009]
 gi|260858563|ref|YP_003232454.1| putative repair protein RadA [Escherichia coli O26:H11 str. 11368]
 gi|260871111|ref|YP_003237513.1| putative repair protein RadA [Escherichia coli O111:H- str. 11128]
 gi|261226746|ref|ZP_05941027.1| predicted repair protein [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255150|ref|ZP_05947683.1| putative repair protein RadA [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291285824|ref|YP_003502642.1| putative ATP-dependent serine protease [Escherichia coli O55:H7
           str. CB9615]
 gi|293403057|ref|ZP_06647154.1| DNA repair protein radA [Escherichia coli FVEC1412]
 gi|293408073|ref|ZP_06651913.1| DNA repair protein RadA [Escherichia coli B354]
 gi|293417861|ref|ZP_06660483.1| DNA repair protein RadA [Escherichia coli B185]
 gi|293476653|ref|ZP_06665061.1| DNA repair protein RadA [Escherichia coli B088]
 gi|298378583|ref|ZP_06988467.1| DNA repair protein RadA/Sms [Escherichia coli FVEC1302]
 gi|300947490|ref|ZP_07161674.1| DNA repair protein RadA [Escherichia coli MS 116-1]
 gi|300955647|ref|ZP_07168002.1| DNA repair protein RadA [Escherichia coli MS 175-1]
 gi|301024646|ref|ZP_07188295.1| DNA repair protein RadA [Escherichia coli MS 196-1]
 gi|306815415|ref|ZP_07449564.1| DNA repair protein RadA [Escherichia coli NC101]
 gi|307313676|ref|ZP_07593295.1| DNA repair protein RadA [Escherichia coli W]
 gi|309787387|ref|ZP_07681999.1| DNA repair protein RadA [Shigella dysenteriae 1617]
 gi|331645087|ref|ZP_08346198.1| DNA repair protein RadA [Escherichia coli M605]
 gi|331661022|ref|ZP_08361954.1| DNA repair protein RadA [Escherichia coli TA206]
 gi|331661342|ref|ZP_08362266.1| DNA repair protein RadA [Escherichia coli TA143]
 gi|331666217|ref|ZP_08367098.1| DNA repair protein RadA [Escherichia coli TA271]
 gi|331681374|ref|ZP_08382011.1| DNA repair protein RadA [Escherichia coli H299]
 gi|13364825|dbj|BAB38770.1| probable ATP-dependent protease [Escherichia coli O157:H7 str.
           Sakai]
 gi|73858300|gb|AAZ91007.1| probable ATP-dependent protease [Shigella sonnei Ss046]
 gi|81243789|gb|ABB64499.1| probable ATP-dependent protease [Shigella dysenteriae Sd197]
 gi|81248151|gb|ABB68859.1| probable ATP-dependent protease [Shigella boydii Sb227]
 gi|115515871|gb|ABJ03946.1| DNA repair protein RadA [Escherichia coli APEC O1]
 gi|157069516|gb|ABV08771.1| DNA repair protein RadA [Escherichia coli HS]
 gi|157080897|gb|ABV20605.1| DNA repair protein RadA [Escherichia coli E24377A]
 gi|169756579|gb|ACA79278.1| DNA repair protein RadA [Escherichia coli ATCC 8739]
 gi|170518784|gb|ACB16962.1| DNA repair protein RadA [Escherichia coli SMS-3-5]
 gi|187428098|gb|ACD07372.1| DNA repair protein RadA [Shigella boydii CDC 3083-94]
 gi|187768005|gb|EDU31849.1| DNA repair protein RadA [Escherichia coli O157:H7 str. EC4196]
 gi|188014900|gb|EDU53022.1| DNA repair protein RadA [Escherichia coli O157:H7 str. EC4113]
 gi|188490624|gb|EDU65727.1| DNA repair protein RadA [Escherichia coli 53638]
 gi|189000727|gb|EDU69713.1| DNA repair protein RadA [Escherichia coli O157:H7 str. EC4076]
 gi|189356048|gb|EDU74467.1| DNA repair protein RadA [Escherichia coli O157:H7 str. EC4401]
 gi|189364263|gb|EDU82682.1| DNA repair protein RadA [Escherichia coli O157:H7 str. EC4486]
 gi|189366923|gb|EDU85339.1| DNA repair protein RadA [Escherichia coli O157:H7 str. EC4501]
 gi|189374769|gb|EDU93185.1| DNA repair protein RadA [Escherichia coli O157:H7 str. EC869]
 gi|189379528|gb|EDU97944.1| DNA repair protein RadA [Escherichia coli O157:H7 str. EC508]
 gi|190902564|gb|EDV62298.1| DNA repair protein RadA [Escherichia coli B7A]
 gi|192926711|gb|EDV81339.1| DNA repair protein RadA [Escherichia coli E22]
 gi|192956107|gb|EDV86572.1| DNA repair protein RadA [Escherichia coli E110019]
 gi|194412787|gb|EDX29080.1| DNA repair protein RadA [Escherichia coli B171]
 gi|194421779|gb|EDX37787.1| DNA repair protein RadA [Escherichia coli 101-1]
 gi|208728003|gb|EDZ77604.1| DNA repair protein RadA [Escherichia coli O157:H7 str. EC4206]
 gi|208734553|gb|EDZ83240.1| DNA repair protein RadA [Escherichia coli O157:H7 str. EC4045]
 gi|208739765|gb|EDZ87447.1| DNA repair protein RadA [Escherichia coli O157:H7 str. EC4042]
 gi|209158717|gb|ACI36150.1| DNA repair protein RadA [Escherichia coli O157:H7 str. EC4115]
 gi|209748870|gb|ACI72742.1| probable ATP-dependent protease [Escherichia coli]
 gi|209748872|gb|ACI72743.1| probable ATP-dependent protease [Escherichia coli]
 gi|209748876|gb|ACI72745.1| probable ATP-dependent protease [Escherichia coli]
 gi|209915114|dbj|BAG80188.1| DNA repair protein [Escherichia coli SE11]
 gi|217321750|gb|EEC30174.1| DNA repair protein RadA [Escherichia coli O157:H7 str. TW14588]
 gi|218354957|emb|CAV02195.1| repair protein radA homolog [Escherichia coli 55989]
 gi|218359233|emb|CAQ91899.1| repair protein radA homolog [Escherichia fergusonii ATCC 35469]
 gi|218363692|emb|CAR01352.1| repair protein radA homolog [Escherichia coli IAI1]
 gi|218368389|emb|CAR06209.1| repair protein radA homolog [Escherichia coli S88]
 gi|218435164|emb|CAR16122.1| repair protein radA homolog [Escherichia coli UMN026]
 gi|222036131|emb|CAP78876.1| DNA repair protein radA [Escherichia coli LF82]
 gi|227837951|gb|EEJ48417.1| DNA repair protein RadA [Escherichia coli 83972]
 gi|242379910|emb|CAQ34747.1| DNA recombination protein [Escherichia coli BL21(DE3)]
 gi|253326025|gb|ACT30627.1| DNA repair protein RadA [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253976218|gb|ACT41889.1| predicted repair protein [Escherichia coli B str. REL606]
 gi|253980375|gb|ACT46045.1| predicted repair protein [Escherichia coli BL21(DE3)]
 gi|254595784|gb|ACT75145.1| predicted repair protein [Escherichia coli O157:H7 str. TW14359]
 gi|257757212|dbj|BAI28714.1| predicted repair protein RadA [Escherichia coli O26:H11 str. 11368]
 gi|257762426|dbj|BAI33923.1| predicted repair protein RadA [Escherichia coli O103:H2 str. 12009]
 gi|257767467|dbj|BAI38962.1| predicted repair protein RadA [Escherichia coli O111:H- str. 11128]
 gi|281181532|dbj|BAI57862.1| DNA repair protein [Escherichia coli SE15]
 gi|284924568|emb|CBG37707.1| DNA repair protein [Escherichia coli 042]
 gi|290765697|gb|ADD59658.1| Predicted ATP-dependent serine protease [Escherichia coli O55:H7
           str. CB9615]
 gi|291321106|gb|EFE60548.1| DNA repair protein RadA [Escherichia coli B088]
 gi|291429972|gb|EFF02986.1| DNA repair protein radA [Escherichia coli FVEC1412]
 gi|291430579|gb|EFF03577.1| DNA repair protein RadA [Escherichia coli B185]
 gi|291472324|gb|EFF14806.1| DNA repair protein RadA [Escherichia coli B354]
 gi|294490654|gb|ADE89410.1| DNA repair protein RadA [Escherichia coli IHE3034]
 gi|298280917|gb|EFI22418.1| DNA repair protein RadA/Sms [Escherichia coli FVEC1302]
 gi|299880317|gb|EFI88528.1| DNA repair protein RadA [Escherichia coli MS 196-1]
 gi|300317484|gb|EFJ67268.1| DNA repair protein RadA [Escherichia coli MS 175-1]
 gi|300452924|gb|EFK16544.1| DNA repair protein RadA [Escherichia coli MS 116-1]
 gi|305851077|gb|EFM51532.1| DNA repair protein RadA [Escherichia coli NC101]
 gi|306906499|gb|EFN37012.1| DNA repair protein RadA [Escherichia coli W]
 gi|307556622|gb|ADN49397.1| DNA repair protein RadA [Escherichia coli ABU 83972]
 gi|307629559|gb|ADN73863.1| DNA repair protein RadA [Escherichia coli UM146]
 gi|308924965|gb|EFP70460.1| DNA repair protein RadA [Shigella dysenteriae 1617]
 gi|309704897|emb|CBJ04250.1| DNA repair protein [Escherichia coli ETEC H10407]
 gi|312949019|gb|ADR29846.1| DNA repair protein RadA [Escherichia coli O83:H1 str. NRG 857C]
 gi|315063691|gb|ADT78018.1| predicted repair protein [Escherichia coli W]
 gi|315616239|gb|EFU96858.1| DNA repair protein RadA [Escherichia coli 3431]
 gi|320176870|gb|EFW51898.1| DNA repair protein RadA [Shigella dysenteriae CDC 74-1112]
 gi|320183587|gb|EFW58432.1| DNA repair protein RadA [Shigella flexneri CDC 796-83]
 gi|320190494|gb|EFW65144.1| DNA repair protein RadA [Escherichia coli O157:H7 str. EC1212]
 gi|320195341|gb|EFW69969.1| DNA repair protein RadA [Escherichia coli WV_060327]
 gi|320200494|gb|EFW75080.1| DNA repair protein RadA [Escherichia coli EC4100B]
 gi|320638610|gb|EFX08315.1| DNA repair protein RadA [Escherichia coli O157:H7 str. G5101]
 gi|320654574|gb|EFX22586.1| DNA repair protein RadA [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320660287|gb|EFX27791.1| DNA repair protein RadA [Escherichia coli O55:H7 str. USDA 5905]
 gi|320665383|gb|EFX32467.1| DNA repair protein RadA [Escherichia coli O157:H7 str. LSU-61]
 gi|323157722|gb|EFZ43827.1| DNA repair protein RadA [Escherichia coli EPECa14]
 gi|323163211|gb|EFZ49043.1| DNA repair protein RadA [Escherichia coli E128010]
 gi|323166199|gb|EFZ51977.1| DNA repair protein RadA [Shigella sonnei 53G]
 gi|323176294|gb|EFZ61886.1| DNA repair protein RadA [Escherichia coli 1180]
 gi|323181930|gb|EFZ67342.1| DNA repair protein RadA [Escherichia coli 1357]
 gi|323190334|gb|EFZ75610.1| DNA repair protein RadA [Escherichia coli RN587/1]
 gi|323380228|gb|ADX52496.1| DNA repair protein RadA [Escherichia coli KO11]
 gi|323935182|gb|EGB31545.1| DNA repair protein RadA [Escherichia coli E1520]
 gi|323939793|gb|EGB35995.1| DNA repair protein RadA [Escherichia coli E482]
 gi|323945802|gb|EGB41848.1| DNA repair protein RadA [Escherichia coli H120]
 gi|323950525|gb|EGB46403.1| DNA repair protein RadA [Escherichia coli H252]
 gi|323955184|gb|EGB50957.1| DNA repair protein RadA [Escherichia coli H263]
 gi|323960104|gb|EGB55749.1| DNA repair protein RadA [Escherichia coli H489]
 gi|323964769|gb|EGB60237.1| DNA repair protein RadA [Escherichia coli M863]
 gi|323970839|gb|EGB66091.1| DNA repair protein RadA [Escherichia coli TA007]
 gi|323975852|gb|EGB70948.1| DNA repair protein RadA [Escherichia coli TW10509]
 gi|324007732|gb|EGB76951.1| DNA repair protein RadA [Escherichia coli MS 57-2]
 gi|324112620|gb|EGC06597.1| DNA repair protein RadA [Escherichia fergusonii B253]
 gi|325495921|gb|EGC93780.1| DNA repair protein RadA [Escherichia fergusonii ECD227]
 gi|326345297|gb|EGD69040.1| DNA repair protein RadA [Escherichia coli O157:H7 str. 1125]
 gi|326346849|gb|EGD70583.1| DNA repair protein RadA [Escherichia coli O157:H7 str. 1044]
 gi|327250013|gb|EGE61743.1| DNA repair protein RadA [Escherichia coli STEC_7v]
 gi|330909833|gb|EGH38343.1| DNA repair protein RadA [Escherichia coli AA86]
 gi|331045844|gb|EGI17963.1| DNA repair protein RadA [Escherichia coli M605]
 gi|331052064|gb|EGI24103.1| DNA repair protein RadA [Escherichia coli TA206]
 gi|331061257|gb|EGI33220.1| DNA repair protein RadA [Escherichia coli TA143]
 gi|331066428|gb|EGI38305.1| DNA repair protein RadA [Escherichia coli TA271]
 gi|331081595|gb|EGI52756.1| DNA repair protein RadA [Escherichia coli H299]
 gi|332090431|gb|EGI95529.1| DNA repair protein RadA [Shigella boydii 3594-74]
          Length = 460

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 10/155 (6%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 63  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 120 AQQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE----EEQPKLM 174

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           VIDS+  +            +     A  +++  +
Sbjct: 175 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAK 209


>gi|319943625|ref|ZP_08017906.1| DNA repair protein RadA [Lautropia mirabilis ATCC 51599]
 gi|319742858|gb|EFV95264.1| DNA repair protein RadA [Lautropia mirabilis ATCC 51599]
          Length = 469

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 59/174 (33%), Gaps = 13/174 (7%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +I  L       + +  + +G    D  LG GG   G +V I G    GK+TL L  +A 
Sbjct: 72  SIALLSEVP--VDTVPRLPTGLAEFDRVLG-GGMVPGSVVLIGGDPGIGKSTLLLQALAL 128

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
                    +V  E +L  +  R   + +     + P   E +L      +      ++V
Sbjct: 129 M-SQNQRVLYVSGEESLAQVALRGARLGIDG--STLPMLAEVSLAHITQAIEQVKPAVVV 185

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           IDS+  +            S     A        +LT    +    +V I  + 
Sbjct: 186 IDSIQTMMSDDLQSAPGSVSQVRDCAA-------QLTRLAKQQGVAVVMIGHVT 232


>gi|118475538|ref|YP_891692.1| DNA repair protein RadA [Campylobacter fetus subsp. fetus 82-40]
 gi|118414764|gb|ABK83184.1| DNA repair protein RadA [Campylobacter fetus subsp. fetus 82-40]
          Length = 446

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 66/183 (36%), Gaps = 24/183 (13%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           KE++    S A    ++QI+                  E I   S+G   LD+ LG GG 
Sbjct: 45  KEISKPSVSTANAKPITQIE-----------------IEKISRQSTGDAELDLVLG-GGV 86

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNL 122
             G +V I G    GK+TL L   +    +G    +V  E +   I   A +L  + +NL
Sbjct: 87  VNGSLVLIGGSPGIGKSTLLLKIGSNLANSGEKVLYVSGEESSTQIKLRANRLDANSENL 146

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
            +      +  L      +      +++IDS+  L            S        + + 
Sbjct: 147 YLLTEINLDSILA----EISKKEYKVLIIDSIQTLYSDKITSAPGSISQIREITFELMRL 202

Query: 183 LRK 185
            ++
Sbjct: 203 AKR 205


>gi|85374042|ref|YP_458104.1| DNA repair protein RadA [Erythrobacter litoralis HTCC2594]
 gi|84787125|gb|ABC63307.1| predicted ATP-dependent serine protease [Erythrobacter litoralis
           HTCC2594]
          Length = 455

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 69/193 (35%), Gaps = 2/193 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           ++G    D ALG GG   G  + + G    GK+TL L   A   K+G    +V  E A  
Sbjct: 71  TTGLAEFDRALG-GGLVPGSAILMGGDPGIGKSTLLLQAAASIAKSGQQVVYVSGEEAAG 129

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +  R   + + +  +    +     +I   L    A  ++VIDS+  +           
Sbjct: 130 QVRMRASRLGVADAPLKLASSTS-VRDILTTLGSMDAPALLVIDSIQTMHSDTIEGAPGT 188

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
            S     A  + +  ++  +++     +    N    ++         +  G     Y  
Sbjct: 189 VSQVRGCAFELIRYAKESGTALVLVGHVTKDGNIAGPRVLEHMVDVVMSFEGERSHQYRI 248

Query: 229 VRLDIRRVGSIKD 241
           +R    R G++ +
Sbjct: 249 LRALKNRFGAVDE 261


>gi|90969177|gb|ABE02576.1| RAD51D splice variant g [Arabidopsis thaliana]
 gi|90969191|gb|ABE02664.1| RAD51D splice variant g [Arabidopsis thaliana]
          Length = 266

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 76/211 (36%), Gaps = 24/211 (11%)

Query: 2   DYRKEMNIVDKSKA-LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
            + +     D+ K  +   LS I+R   +  +  L     +      +S+G    D  L 
Sbjct: 43  AFSQRQTNADRLKEGITLILSLIERQ-CRPLVNGLKLLEDLHRNKHTLSTGDKETDSLL- 100

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GTCAFVDAEHALDSIYARKL---- 115
            GGF +G++ E+ GP SSGKT   +   A   +   G   ++D  ++  +    +     
Sbjct: 101 QGGFREGQLTELVGPSSSGKTQFCMQAAASVAENHLGRVLYLDTGNSFSARRIAQFICSS 160

Query: 116 ---------------GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL-TP 159
                                  +       +      M V    + ++V+DS+++L TP
Sbjct: 161 SDATLGQKVMSRILCHTVYDIYTLFDTLQDLEITLRLQMNVNESRLRLLVVDSISSLITP 220

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
                G  G +L      L+ +   + + +I
Sbjct: 221 ILGGSGSQGRALMVAIGYLLKKLAHEHSIAI 251


>gi|70732661|ref|YP_262424.1| DNA repair protein RadA [Pseudomonas fluorescens Pf-5]
 gi|68346960|gb|AAY94566.1| DNA repair protein RadA [Pseudomonas fluorescens Pf-5]
          Length = 455

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 57/146 (39%), Gaps = 8/146 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I   S+ S  LD  LG GG   G +V I G    GK+T+ L T+           +V
Sbjct: 67  VEEIPRFSTASGELDRVLG-GGLVDGSVVLIGGDPGIGKSTILLQTLCNIATR-MPALYV 124

Query: 102 DAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +   +   AR+LG+    L +      E  +E      R     ++VIDS+  +  
Sbjct: 125 TGEESQQQVAMRARRLGLPQDQLRVMT----ETCIETIIATARVEKPKVMVIDSIQTIFT 180

Query: 160 RAEIEGDMGESLPGMQARLMSQALRK 185
                   G S     A L+ +  ++
Sbjct: 181 EQLQSAPGGVSQVRESAALLVRYAKQ 206


>gi|325954612|ref|YP_004238272.1| DNA repair protein RadA [Weeksella virosa DSM 16922]
 gi|323437230|gb|ADX67694.1| DNA repair protein RadA [Weeksella virosa DSM 16922]
          Length = 453

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 76/201 (37%), Gaps = 23/201 (11%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+ +  LD  LG GG   G ++ + G    GK+TL L    +   T     +V  E +
Sbjct: 71  RISTKNAELDRVLG-GGIVPGSVILVGGEPGVGKSTLMLQIALKLNNT--KILYVSGEES 127

Query: 107 LDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           ++ +   A ++G++        P+T  Q +       +     +I+IDSV  L       
Sbjct: 128 VNQVKLRAERIGIESDEC-YVLPETNTQKI---FAHAKEIQPQLIIIDSVQTLQT----- 178

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM-------KIGVMFGSPETT 217
               ES PG  ++ + +   +L      +   ++ I  +         KI          
Sbjct: 179 -AYVESSPGSISQ-IRETTSELIQYAKETNTPVILIGHITKEGVIAGPKILEHMVDVVLQ 236

Query: 218 TGGNALKFYSSVRLDIRRVGS 238
             G+    Y  +R +  R GS
Sbjct: 237 FEGDRNHIYRILRANKNRFGS 257


>gi|227533662|ref|ZP_03963711.1| DNA repair protein RadA [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227188646|gb|EEI68713.1| DNA repair protein RadA [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 396

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 72/188 (38%), Gaps = 20/188 (10%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            V +G   L+  LG GG   G +V I G    GK+TL L    Q   TGGT  +V  E +
Sbjct: 11  RVKTGLDELNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSGQLANTGGTVLYVSGEES 69

Query: 107 LDSIYARKLGVDLKNL-LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
              I  R   + + N  +   P+T   ++E    ++     D +VIDSV  +        
Sbjct: 70  ASQIKMRAGRLGVANSGMYLYPETDMPSIE---DVINQMQPDYVVIDSVQTM-------N 119

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
               +        + +   +L   I++SK + +FI     K G +        G   L+ 
Sbjct: 120 VPEMNSAVGSVAQIREVTAELMR-IAKSKGVTIFIVGHVTKEGAI-------AGPKILEH 171

Query: 226 YSSVRLDI 233
                L  
Sbjct: 172 MVDTVLYF 179


>gi|221128161|ref|XP_002162925.1| PREDICTED: similar to X-ray repair complementing defective repair
           in Chinese hamster cells 3, partial [Hydra
           magnipapillata]
          Length = 202

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 31/155 (20%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G   +D  L  GG     + EI G  +SGKT L L                D+  ++
Sbjct: 79  LSTGCELVDQCL-HGGIIFPGVTEICGESASGKTQLCLQICLN-------ALISDSYSSI 130

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
                  L + +  LL                   +  + +IV+DSVAAL  RAE +   
Sbjct: 131 LDDLWTLLNIKVDLLL------------------SNQKIKLIVLDSVAALF-RAEYDA-- 169

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
             S    +++++++   KL     + K   V +NQ
Sbjct: 170 --SNMINRSQMLAKFGLKLHHISQKYKICFVVVNQ 202


>gi|189500381|ref|YP_001959851.1| DNA repair protein RadA [Chlorobium phaeobacteroides BS1]
 gi|189495822|gb|ACE04370.1| DNA repair protein RadA [Chlorobium phaeobacteroides BS1]
          Length = 454

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 79/239 (33%), Gaps = 28/239 (11%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           Q       + +SSG   LD  LG GG      + I G    GK+TL L     +  +   
Sbjct: 59  QNESPAPFKRISSGINELDRVLG-GGLMPASAILIGGEPGIGKSTLMLQLARHTSPSKLL 117

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
               +   A     A++L +   ++ +         LE    ++     DI++IDS+  +
Sbjct: 118 YISGEESPAQVRDRAKRLAIRSNDIWLVPEVN----LEKILGVIERDEPDIVIIDSIQTI 173

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
                      E           +         ++S+  ++ I     K G +       
Sbjct: 174 YSE--------EYHSSAGTITQIRECTSELIRAAKSRDFILLIIGHITKTGSL------- 218

Query: 218 TGGNALKFYSSVRL--------DIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
            G  AL+      L          R + SIK++   T      ++ +N + +     EF
Sbjct: 219 AGPKALEHMVDTVLQFEGEGHQWYRMIRSIKNRFGPTNEIGVFRMDENGLEAVTNPSEF 277


>gi|154319083|ref|XP_001558859.1| hypothetical protein BC1G_02493 [Botryotinia fuckeliana B05.10]
 gi|150856924|gb|EDN32116.1| hypothetical protein BC1G_02493 [Botryotinia fuckeliana B05.10]
          Length = 485

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 71/204 (34%), Gaps = 27/204 (13%)

Query: 28  GKGAIMQLGSQGSIFEGI-EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           G+G + +L   G     + E +S+    +D ALG GG P G I E+ G   +GKT   L 
Sbjct: 88  GEGEVKKLRKSGKEVANMWEAISTLDDDMDRALG-GGIPAGYITEVTGESGAGKTQFLLT 146

Query: 87  TIAQSQKTGGT-----CAFVDAEHALDSIYARKLGVDLKNLLISQP-------------- 127
            +  +Q            ++  E +L      +L +    LL S P              
Sbjct: 147 LLLSAQLPAPHGLASPTLYISTESSLPITRLSQL-LRTHPLLASHPSPPSLDRVISISTP 205

Query: 128 --DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD---MGESLPGMQARLMSQA 182
             ++ +  L     +        ++I    A   RAE E      G      ++  + + 
Sbjct: 206 DLESQDHILRFQVPVAIKRHGIRLLILDSVAANYRAEFERPGVTKGGGNMAQRSAELVKL 265

Query: 183 LRKLTSSISRSKCILVFINQMRMK 206
            + L          +V  NQ+  +
Sbjct: 266 GQLLRDLAREHGVAIVVANQVADR 289


>gi|298291076|ref|YP_003693015.1| DNA repair protein RadA [Starkeya novella DSM 506]
 gi|296927587|gb|ADH88396.1| DNA repair protein RadA [Starkeya novella DSM 506]
          Length = 475

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 71/210 (33%), Gaps = 2/210 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG ++ L S     E    +  G   LD   G GG   G ++ I G    GK+TL +   
Sbjct: 52  KGRLIALESLSGTSEDAPRIRVGISELDRVAG-GGLVPGSVLLIGGDPGIGKSTLLIQAS 110

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A   + G    +V  E A+  +  R   + L    +          +I   L       +
Sbjct: 111 AALAEAGHRIIYVSGEEAVAQVRLRAERLGLAGAAVELAA-ETNVEDIVATLAEGRRPAL 169

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +VIDS+  +            +     A+++ +  ++  +++     +         ++ 
Sbjct: 170 VVIDSIQTMWTDTVESAPGTVTQVRSSAQILIRFAKRAGAAVILVGHVTKDGQIAGPRVV 229

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
                   +  G+    +  +R    R G 
Sbjct: 230 EHMVDAVLSFEGDGAHHFRILRAQKNRFGP 259


>gi|194434142|ref|ZP_03066410.1| DNA repair protein RadA [Shigella dysenteriae 1012]
 gi|194417579|gb|EDX33680.1| DNA repair protein RadA [Shigella dysenteriae 1012]
 gi|320177690|gb|EFW52679.1| DNA repair protein RadA [Shigella boydii ATCC 9905]
 gi|332083384|gb|EGI88615.1| DNA repair protein RadA [Shigella boydii 5216-82]
 gi|332098143|gb|EGJ03116.1| DNA repair protein RadA [Shigella dysenteriae 155-74]
          Length = 460

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 12/156 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 63  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 120 AQQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE----EEQPKLM 174

Query: 150 VIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
           VIDS+  +   A+I+   G  +     A  +++  +
Sbjct: 175 VIDSIQVMH-MADIQSSPGSVAQVRETAAYLTRFAK 209


>gi|261493593|ref|ZP_05990113.1| S16 family peptidase/DNA repair protein RadA [Mannheimia
           haemolytica serotype A2 str. BOVINE]
 gi|261495431|ref|ZP_05991879.1| S16 family peptidase/DNA repair protein RadA [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261308936|gb|EEY10191.1| S16 family peptidase/DNA repair protein RadA [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261310775|gb|EEY11958.1| S16 family peptidase/DNA repair protein RadA [Mannheimia
           haemolytica serotype A2 str. BOVINE]
          Length = 459

 Score = 49.8 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   SSG   LD  LG GG   G  + I G   +GK+TL L  +    +   T  +V
Sbjct: 70  LQEVPRFSSGFNELDRVLG-GGVVPGSAILIGGHPGAGKSTLLLQVMCGLAQHLPT-LYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+   NL +    + E    I           I+VIDS+  +  
Sbjct: 128 TGEESLQQVAMRANRLGLPTANLKMLSETSVEHICNIA----DQEKPKIMVIDSIQVMHL 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     S     A  +++  +    +I  
Sbjct: 184 SDIQSSPGSVSQVRECASFLTRYAKTRQVAIIM 216


>gi|260775334|ref|ZP_05884231.1| DNA repair protein RadA [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608515|gb|EEX34680.1| DNA repair protein RadA [Vibrio coralliilyticus ATCC BAA-450]
          Length = 472

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 63/170 (37%), Gaps = 16/170 (9%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   +SG   LD  LG GG   G  + I G   +GK+TL L T+           +V
Sbjct: 83  LQEVPRFTSGFKELDRVLG-GGVVPGAAILIGGNPGAGKSTLLLQTMCYLASQ-MPTLYV 140

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+   NL +      ++  +I +         I+VIDS+  +  
Sbjct: 141 TGEESLQQVAMRASRLGLPKDNLKMLSETNVDRICQIAEK----EQPKILVIDSIQVMHV 196

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
                     +     A  +++          +   + VFI     K G 
Sbjct: 197 ADVQSSPGSVAQVRESATALTRYA--------KQNNVAVFIVGHVTKDGT 238


>gi|226940958|ref|YP_002796032.1| DNA repair protein RadA [Laribacter hongkongensis HLHK9]
 gi|226715885|gb|ACO75023.1| RadA [Laribacter hongkongensis HLHK9]
          Length = 453

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 76/211 (36%), Gaps = 14/211 (6%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +G   LD  LG GG  +G +V I G    GK+TL L  +A    +         E A  
Sbjct: 71  PTGIDELDRVLG-GGLVRGAVVLIGGDPGIGKSTLLLQALATIGSSRKVLYVTGEESAAQ 129

Query: 109 -SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
            ++ A +L VD +++ +      +Q L             + VIDS+  +   A      
Sbjct: 130 VALRASRLAVDARSVRLLAEIRLDQILATLRHEAPE----VAVIDSIQTMYTDALQSAPG 185

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
             +     A        +LT    ++   +V +  +  +  +           + L F  
Sbjct: 186 SVAQVRECAA-------QLTRVAKQTGITIVMVGHVTKEGALAGPRVLEHIVDSVLYFEG 238

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
                 R + +IK++     N+  V  + ++
Sbjct: 239 DTHSSFRMIRAIKNRFGAV-NELGVFAMTDR 268


>gi|194225399|ref|XP_001917338.1| PREDICTED: similar to X-ray repair cross complementing protein 3
           [Equus caballus]
          Length = 356

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 7/109 (6%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---GGT---CA 99
           + +S G   LD  L  GG P   I E+ G  S+GKT LAL      Q     GG      
Sbjct: 80  QRLSLGCPVLDRLL-RGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAV 138

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           +V  E    S   ++L    ++L    P+   + +   + +    A D+
Sbjct: 139 YVCTEDVFPSKRLQQLMSQQQHLRREVPEEVVRKIRFGNQIFIEHAADV 187


>gi|57641845|ref|YP_184323.1| ATPase [Thermococcus kodakarensis KOD1]
 gi|57160169|dbj|BAD86099.1| ATPase, RecA superfamily [Thermococcus kodakarensis KOD1]
          Length = 237

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
           G + + ++ + SG  GLD  +G G  P GR+  + GP  SGKTTL +  +A+  K     
Sbjct: 4   GELLKNLDRIPSGVPGLDELIGGGFLP-GRVYVVTGPPGSGKTTLGMQFLAEGAKNDEKG 62

Query: 99  AFV 101
            F+
Sbjct: 63  LFI 65


>gi|260773450|ref|ZP_05882366.1| DNA repair protein RadA [Vibrio metschnikovii CIP 69.14]
 gi|260612589|gb|EEX37792.1| DNA repair protein RadA [Vibrio metschnikovii CIP 69.14]
          Length = 459

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 16/170 (9%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   SSG    D  LG GG   G  + I G   +GK+TL L T+           +V
Sbjct: 70  LQEVPRFSSGFKEFDRVLG-GGVVPGAAILIGGSPGAGKSTLLLQTMCLLSAQ-MPTLYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+  ++L +      ++  +I +         I+VIDS+  +  
Sbjct: 128 TGEESLQQVAMRAARLGLPKEHLKMLSETNVDRICQIAE----QEQPRIMVIDSIQVMHV 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
                     +     A  +++          +   + VFI     K G 
Sbjct: 184 ADVQSSPGSVAQVRESATALTRYA--------KQNNVAVFIVGHVTKDGT 225


>gi|239993714|ref|ZP_04714238.1| DNA repair protein RadA [Alteromonas macleodii ATCC 27126]
          Length = 455

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 83/244 (34%), Gaps = 17/244 (6%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
                E +   SS    LD  LG GG   G  + I G   +GK+TL L  + Q  K+  T
Sbjct: 64  NAIDLESLPRFSSTFKELDRVLG-GGIVPGAAMLIGGSPGAGKSTLLLQVMCQMAKSE-T 121

Query: 98  CAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
             +V  E +L  +   A++L +    L++      E   ++           I+VIDS+ 
Sbjct: 122 ALYVTGEESLQQVAMRAKRLNLPDDKLMMLAETNVETICDLALT----KKPKIMVIDSIQ 177

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            +            S     A  +++  ++   ++     +    N    K+        
Sbjct: 178 VMHVSDVQSAPGSVSQVRESAAYLTRFAKQNHIAMFIVGHVTKDGNLAGPKVLEHCIDSS 237

Query: 216 TTTGGNALKFYSSVRLDIRRVGSIKD---------KDSITGNQTRVKVVKNKMASPFKQV 266
               G +   Y ++R    R G++ +               N + + + +    +P   V
Sbjct: 238 MMLEGESDGRYRTLRSHKNRFGAVNELGVFAMTEKGLKEVSNPSAIFLSRGDNETPGSSV 297

Query: 267 EFDI 270
               
Sbjct: 298 MVIW 301


>gi|149202599|ref|ZP_01879571.1| DNA repair protein RadA [Roseovarius sp. TM1035]
 gi|149143881|gb|EDM31915.1| DNA repair protein RadA [Roseovarius sp. TM1035]
          Length = 454

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 59/180 (32%), Gaps = 11/180 (6%)

Query: 28  GK-GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           GK G  + L    +         SG   LD  LG G  P   I+ + G    GK+TL L 
Sbjct: 49  GKRGTPLILTDLSTEEAPPPRTLSGIGELDRVLGGGLVPSSAIL-VGGDPGIGKSTLLLQ 107

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
             A+    G    ++  E A   +  R   + L    +         L      + S   
Sbjct: 108 AAARFAGAGLKTFYISGEEASAQVRMRAQRLGLGEAPVKLAAATS--LRDILTTMESEKP 165

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+++IDS+  +            S     A        +LTS   R    ++ +  +   
Sbjct: 166 DLVIIDSIQTVWSDTVEAAPGSVSQVRAAAH-------ELTSFAKRFGTSVILVGHVTKD 218


>gi|260459267|ref|ZP_05807522.1| putative circadian clock protein, KaiC [Mesorhizobium opportunistum
           WSM2075]
 gi|259034821|gb|EEW36077.1| putative circadian clock protein, KaiC [Mesorhizobium opportunistum
           WSM2075]
          Length = 495

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 4/97 (4%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M    +  +   +E V +G    D  L +GG P+GR   + G   SGKT  A   +A   
Sbjct: 1   MTTAEEILVDPALERVRTGIEAFDD-LVMGGLPRGRTTIVGGTPGSGKTVFATQFLAHGI 59

Query: 93  KTG---GTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
                 G     +   A   +     G D++    + 
Sbjct: 60  TMRDEPGVFVTFEESPAEIEVNMASFGWDIRGWRENN 96



 Score = 42.9 bits (99), Expect = 0.074,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 49/134 (36%), Gaps = 13/134 (9%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
             + V+SG+  LD   G GGF +  +  + G   +GKT L  + +A     G     V  
Sbjct: 256 STKRVTSGNPELDRMCG-GGFFRDSVTLVSGATGTGKTLLVTNFLAGGAAAGERALLVGY 314

Query: 104 EHALDSIYARKLGVDLK------------NLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           E +   ++    G  +               +  +       L +   LV     D I I
Sbjct: 315 EESRGQLFRNARGWGVDFEAMEADGRLKIVCIYPEAQNLPDHLLMVRELVEEFKPDRIAI 374

Query: 152 DSVAALTPRAEIEG 165
           DS++AL   A   G
Sbjct: 375 DSLSALERIASETG 388


>gi|116333227|ref|YP_794754.1| DNA repair protein RadA [Lactobacillus brevis ATCC 367]
 gi|116098574|gb|ABJ63723.1| Predicted ATP-dependent serine protease [Lactobacillus brevis ATCC
           367]
          Length = 460

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 87/239 (36%), Gaps = 35/239 (14%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
            L+  LG GG   G ++ I G    GK+TL L    Q  +TGG   +V  E +   I  R
Sbjct: 81  ELNRVLG-GGIVPGSLILIGGDPGIGKSTLLLQVSGQLSQTGGKVLYVSGEESASQIKMR 139

Query: 114 KLGVDL-KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
              + +  + L   P+T    +      +     D +VIDSV  +      +    ES  
Sbjct: 140 ADRLVVNSDHLYLYPETD---MASIRANIEQMKPDYVVIDSVQTM------QAPGIESAI 190

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
           G  +++ +     +   I+++  I +F+     K G +        G   L+      L 
Sbjct: 191 GSVSQIRAVTGELMQ--IAKTNGITIFVVGHVTKGGAI-------AGPKILEHMVDTVLY 241

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASI 291
                   D          ++ VKN+  S  +   F++         G L ++   + I
Sbjct: 242 FEG-----DLHHTY---RILRAVKNRFGSTNELGIFEM-------REGGLYEVANPSEI 285


>gi|308232508|ref|ZP_07416276.2| DNA repair protein radA [Mycobacterium tuberculosis SUMu001]
 gi|308369167|ref|ZP_07416805.2| DNA repair protein radA [Mycobacterium tuberculosis SUMu002]
 gi|308373953|ref|ZP_07434267.2| DNA repair protein radA [Mycobacterium tuberculosis SUMu006]
 gi|308378378|ref|ZP_07482378.2| DNA repair protein radA [Mycobacterium tuberculosis SUMu009]
 gi|308380739|ref|ZP_07490936.2| DNA repair protein radA [Mycobacterium tuberculosis SUMu011]
 gi|308213811|gb|EFO73210.1| DNA repair protein radA [Mycobacterium tuberculosis SUMu001]
 gi|308328565|gb|EFP17416.1| DNA repair protein radA [Mycobacterium tuberculosis SUMu002]
 gi|308343632|gb|EFP32483.1| DNA repair protein radA [Mycobacterium tuberculosis SUMu006]
 gi|308352809|gb|EFP41660.1| DNA repair protein radA [Mycobacterium tuberculosis SUMu009]
 gi|308360614|gb|EFP49465.1| DNA repair protein radA [Mycobacterium tuberculosis SUMu011]
          Length = 445

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 1/125 (0%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +G   LD  LG GG   G +  + G    GK+TL L    +  ++G    +V  E +  
Sbjct: 36  PTGIDELDRVLG-GGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRALYVSGEESAG 94

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            I  R   +     +       +  +      + +    ++++DSV  ++         G
Sbjct: 95  QIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMSTSEADGVTGG 154

Query: 169 ESLPG 173
            +   
Sbjct: 155 VTQVR 159


>gi|295314967|gb|ADF97633.1| DNA repair protein RAD51 4-like protein [Hypophthalmichthys
           molitrix]
          Length = 320

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 80/256 (31%), Gaps = 39/256 (15%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-GGT 97
             +     ++S+GS  LD  L   G   G I E+ G   SGKT +              T
Sbjct: 63  EELLSSTAILSTGSPSLDKLL-DSGLYTGEITELIGSPGSGKTQVCFSVAVNMSHQLKQT 121

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
             ++D +  +           L+ L    P+  EQ   +  + V        ++  +  L
Sbjct: 122 VFYIDTKGGMC------ANRLLQMLQNKTPNMEEQMEALQKIKVFRVFDVFSLLACLQNL 175

Query: 158 TP----RAEIEGDMGESLP----------------GMQARLMSQALRKLTSSISRSKCIL 197
                 +A + G   ++L                      L+ Q   ++          +
Sbjct: 176 RSNGLQKASVGGGSVKALMVDSVSAVLSSMLGGKQNEGMSLLMQVAGEMKMIAKDFNIAV 235

Query: 198 VFINQMRMKIGVMFGSPETTTG-GNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           +  N +        G+     G G +       R+ ++RV + +       +     + K
Sbjct: 236 LVTNHVIKD-----GNGHLKAGLGQSWSHVPRTRVLLQRVENAETS-----SLRTATLTK 285

Query: 257 NKMASPFKQVEFDIMY 272
           +   +     EFD+ +
Sbjct: 286 SSRQACHLVEEFDLCH 301


>gi|308371391|ref|ZP_07424814.2| DNA repair protein radA [Mycobacterium tuberculosis SUMu003]
 gi|308374921|ref|ZP_07442093.2| DNA repair protein radA [Mycobacterium tuberculosis SUMu007]
 gi|308376166|ref|ZP_07437881.2| DNA repair protein radA [Mycobacterium tuberculosis SUMu008]
 gi|308328980|gb|EFP17831.1| DNA repair protein radA [Mycobacterium tuberculosis SUMu003]
 gi|308348099|gb|EFP36950.1| DNA repair protein radA [Mycobacterium tuberculosis SUMu007]
 gi|308352022|gb|EFP40873.1| DNA repair protein radA [Mycobacterium tuberculosis SUMu008]
 gi|323717779|gb|EGB26977.1| DNA repair protein radA [Mycobacterium tuberculosis CDC1551A]
          Length = 460

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 1/125 (0%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +G   LD  LG GG   G +  + G    GK+TL L    +  ++G    +V  E +  
Sbjct: 51  PTGIDELDRVLG-GGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRALYVSGEESAG 109

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            I  R   +     +       +  +      + +    ++++DSV  ++         G
Sbjct: 110 QIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMSTSEADGVTGG 169

Query: 169 ESLPG 173
            +   
Sbjct: 170 VTQVR 174


>gi|15610721|ref|NP_218102.1| DNA repair protein RadA [Mycobacterium tuberculosis H37Rv]
 gi|15843198|ref|NP_338235.1| DNA repair protein RadA [Mycobacterium tuberculosis CDC1551]
 gi|31794762|ref|NP_857255.1| DNA repair protein RadA [Mycobacterium bovis AF2122/97]
 gi|121639505|ref|YP_979729.1| DNA repair protein RadA [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148663449|ref|YP_001284972.1| DNA repair protein RadA [Mycobacterium tuberculosis H37Ra]
 gi|148824791|ref|YP_001289545.1| DNA repair protein RadA [Mycobacterium tuberculosis F11]
 gi|215405633|ref|ZP_03417814.1| DNA repair protein RadA [Mycobacterium tuberculosis 02_1987]
 gi|215413505|ref|ZP_03422182.1| DNA repair protein RadA [Mycobacterium tuberculosis 94_M4241A]
 gi|215429086|ref|ZP_03427005.1| DNA repair protein RadA [Mycobacterium tuberculosis T92]
 gi|215432558|ref|ZP_03430477.1| DNA repair protein RadA [Mycobacterium tuberculosis EAS054]
 gi|215447919|ref|ZP_03434671.1| DNA repair protein RadA [Mycobacterium tuberculosis T85]
 gi|218755369|ref|ZP_03534165.1| DNA repair protein RadA [Mycobacterium tuberculosis GM 1503]
 gi|219559662|ref|ZP_03538738.1| DNA repair protein RadA [Mycobacterium tuberculosis T17]
 gi|224992002|ref|YP_002646691.1| DNA repair protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253800626|ref|YP_003033627.1| DNA repair protein radA [Mycobacterium tuberculosis KZN 1435]
 gi|254234158|ref|ZP_04927482.1| DNA repair protein radA [Mycobacterium tuberculosis C]
 gi|254366148|ref|ZP_04982192.1| DNA repair protein radA [Mycobacterium tuberculosis str. Haarlem]
 gi|254552694|ref|ZP_05143141.1| DNA repair protein RadA [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260184502|ref|ZP_05761976.1| DNA repair protein RadA [Mycobacterium tuberculosis CPHL_A]
 gi|260198627|ref|ZP_05766118.1| DNA repair protein RadA [Mycobacterium tuberculosis T46]
 gi|260202773|ref|ZP_05770264.1| DNA repair protein RadA [Mycobacterium tuberculosis K85]
 gi|289441015|ref|ZP_06430759.1| DNA repair protein RadA [Mycobacterium tuberculosis T46]
 gi|289445179|ref|ZP_06434923.1| DNA repair protein RadA [Mycobacterium tuberculosis CPHL_A]
 gi|289555849|ref|ZP_06445059.1| DNA repair protein radA [Mycobacterium tuberculosis KZN 605]
 gi|289571827|ref|ZP_06452054.1| DNA repair protein radA [Mycobacterium tuberculosis T17]
 gi|289572238|ref|ZP_06452465.1| DNA repair protein radA [Mycobacterium tuberculosis K85]
 gi|289747422|ref|ZP_06506800.1| DNA repair protein radA [Mycobacterium tuberculosis 02_1987]
 gi|289752300|ref|ZP_06511678.1| DNA repair protein radA [Mycobacterium tuberculosis T92]
 gi|289755714|ref|ZP_06515092.1| DNA repair protein radA [Mycobacterium tuberculosis EAS054]
 gi|289759743|ref|ZP_06519121.1| DNA repair protein rada [Mycobacterium tuberculosis T85]
 gi|289763764|ref|ZP_06523142.1| DNA repair protein radA [Mycobacterium tuberculosis GM 1503]
 gi|294993705|ref|ZP_06799396.1| DNA repair protein RadA [Mycobacterium tuberculosis 210]
 gi|297636260|ref|ZP_06954040.1| DNA repair protein RadA [Mycobacterium tuberculosis KZN 4207]
 gi|297733253|ref|ZP_06962371.1| DNA repair protein RadA [Mycobacterium tuberculosis KZN R506]
 gi|298527064|ref|ZP_07014473.1| DNA repair protein rada [Mycobacterium tuberculosis 94_M4241A]
 gi|306790857|ref|ZP_07429179.1| DNA repair protein radA [Mycobacterium tuberculosis SUMu004]
 gi|306791180|ref|ZP_07429482.1| DNA repair protein radA [Mycobacterium tuberculosis SUMu005]
 gi|306974057|ref|ZP_07486718.1| DNA repair protein radA [Mycobacterium tuberculosis SUMu010]
 gi|307086382|ref|ZP_07495495.1| DNA repair protein radA [Mycobacterium tuberculosis SUMu012]
 gi|313660583|ref|ZP_07817463.1| DNA repair protein RadA [Mycobacterium tuberculosis KZN V2475]
 gi|54038999|sp|P65954|RADA_MYCBO RecName: Full=DNA repair protein RadA homolog; AltName: Full=DNA
           repair protein Sms homolog
 gi|54041781|sp|P65953|RADA_MYCTU RecName: Full=DNA repair protein RadA homolog; AltName: Full=DNA
           repair protein Sms homolog
 gi|2950408|emb|CAA17854.1| DNA REPAIR PROTEIN RADA (DNA REPAIR PROTEIN SMS) [Mycobacterium
           tuberculosis H37Rv]
 gi|13883551|gb|AAK48049.1| DNA repair protein RadA [Mycobacterium tuberculosis CDC1551]
 gi|31620359|emb|CAD95802.1| DNA REPAIR PROTEIN RADA (DNA REPAIR PROTEIN SMS) [Mycobacterium
           bovis AF2122/97]
 gi|121495153|emb|CAL73639.1| DNA repair protein radA [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|124603826|gb|EAY61789.1| DNA repair protein radA [Mycobacterium tuberculosis C]
 gi|134151660|gb|EBA43705.1| DNA repair protein radA [Mycobacterium tuberculosis str. Haarlem]
 gi|148507601|gb|ABQ75410.1| DNA repair protein RadA [Mycobacterium tuberculosis H37Ra]
 gi|148723318|gb|ABR07943.1| DNA repair protein radA [Mycobacterium tuberculosis F11]
 gi|224775117|dbj|BAH27923.1| DNA repair protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253322129|gb|ACT26732.1| DNA repair protein radA [Mycobacterium tuberculosis KZN 1435]
 gi|289413934|gb|EFD11174.1| DNA repair protein RadA [Mycobacterium tuberculosis T46]
 gi|289418137|gb|EFD15338.1| DNA repair protein RadA [Mycobacterium tuberculosis CPHL_A]
 gi|289440481|gb|EFD22974.1| DNA repair protein radA [Mycobacterium tuberculosis KZN 605]
 gi|289536669|gb|EFD41247.1| DNA repair protein radA [Mycobacterium tuberculosis K85]
 gi|289545581|gb|EFD49229.1| DNA repair protein radA [Mycobacterium tuberculosis T17]
 gi|289687950|gb|EFD55438.1| DNA repair protein radA [Mycobacterium tuberculosis 02_1987]
 gi|289692887|gb|EFD60316.1| DNA repair protein radA [Mycobacterium tuberculosis T92]
 gi|289696301|gb|EFD63730.1| DNA repair protein radA [Mycobacterium tuberculosis EAS054]
 gi|289711270|gb|EFD75286.1| DNA repair protein radA [Mycobacterium tuberculosis GM 1503]
 gi|289715307|gb|EFD79319.1| DNA repair protein rada [Mycobacterium tuberculosis T85]
 gi|298496858|gb|EFI32152.1| DNA repair protein rada [Mycobacterium tuberculosis 94_M4241A]
 gi|308332802|gb|EFP21653.1| DNA repair protein radA [Mycobacterium tuberculosis SUMu004]
 gi|308340293|gb|EFP29144.1| DNA repair protein radA [Mycobacterium tuberculosis SUMu005]
 gi|308356659|gb|EFP45510.1| DNA repair protein radA [Mycobacterium tuberculosis SUMu010]
 gi|308364202|gb|EFP53053.1| DNA repair protein radA [Mycobacterium tuberculosis SUMu012]
 gi|326905424|gb|EGE52357.1| DNA repair protein radA [Mycobacterium tuberculosis W-148]
 gi|328460357|gb|AEB05780.1| DNA repair protein radA [Mycobacterium tuberculosis KZN 4207]
          Length = 480

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 1/125 (0%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +G   LD  LG GG   G +  + G    GK+TL L    +  ++G    +V  E +  
Sbjct: 71  PTGIDELDRVLG-GGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRALYVSGEESAG 129

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            I  R   +     +       +  +      + +    ++++DSV  ++         G
Sbjct: 130 QIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMSTSEADGVTGG 189

Query: 169 ESLPG 173
            +   
Sbjct: 190 VTQVR 194


>gi|312884370|ref|ZP_07744076.1| DNA repair protein RadA [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367953|gb|EFP95499.1| DNA repair protein RadA [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 459

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 64/170 (37%), Gaps = 16/170 (9%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   +SG   LD  LG GG   G  + I G   +GK+TL L T+           +V
Sbjct: 70  LQEVPRFTSGFRELDRVLG-GGIVPGAAILIGGNPGAGKSTLLLQTMC-FLAANMPTLYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+   NL +    + ++  +I +         I+VIDS+  +  
Sbjct: 128 TGEESLQQVAMRASRLGLPKDNLKMLSETSVDRICQIAEK----EQPKIMVIDSIQVMHV 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
                     +     A  +++          +   + VFI     K G 
Sbjct: 184 ADVQSSPGSVAQVREAATALTRYA--------KQNNVSVFIVGHVTKDGT 225


>gi|291410935|ref|XP_002721745.1| PREDICTED: X-ray repair cross complementing protein 3-like
           [Oryctolagus cuniculus]
          Length = 344

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 41/109 (37%), Gaps = 7/109 (6%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---GGT---CA 99
           + +S G   LD  L  GG P   I E+ GP S+GKT LAL      Q     GG      
Sbjct: 78  QRLSLGCPVLDGLL-RGGLPLDGITELAGPGSAGKTQLALQLCLAVQFPRQHGGLQAGAV 136

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           ++  E A  +   ++L      L           +  +  +    A D+
Sbjct: 137 YICTEGAFPTRRLQQLIGQHWRLRADVARDEVGKIRFSSQIFVEHAADV 185


>gi|148262213|ref|YP_001228919.1| DNA repair protein RadA [Geobacter uraniireducens Rf4]
 gi|146395713|gb|ABQ24346.1| DNA repair protein RadA [Geobacter uraniireducens Rf4]
          Length = 453

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 57/151 (37%), Gaps = 12/151 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           I Q+G +  +      + +G    D  LG GG   G +V I G    GK+TL L      
Sbjct: 60  ISQVGGEAEMR-----LPTGISEFDRVLG-GGLVAGSLVLIGGDPGIGKSTLLLQATDHF 113

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            K  G+  +V  E +   I  R  ++GV+  +L I    +    LE      +      +
Sbjct: 114 AKASGSVLYVSGEESARQIKLRGARMGVNASDLFILAETS----LEKILTHAQRMQPKAL 169

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           V+DS+  +   A        S     A  + 
Sbjct: 170 VVDSIQTVFTSALESAPGSVSQVRETAGRLM 200


>gi|21229108|ref|NP_635030.1| putative resolvase/recombinase [Methanosarcina mazei Go1]
 gi|20907665|gb|AAM32702.1| putative resolvase/recombinase [Methanosarcina mazei Go1]
          Length = 240

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 57/167 (34%), Gaps = 12/167 (7%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++ VS+G   LD  L  GG+P  +   I G   SGKT   +H + +S   G  C  +  E
Sbjct: 1   MDRVSTGIEELDRKLS-GGYPGNKATLITGVAGSGKTIYGIHFLHRSCVEGRKCLMIATE 59

Query: 105 HALDSIYARK--LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
              + I  +   LG D+K    S     E   E    ++               L    E
Sbjct: 60  ETPEDILYQAELLGHDIKPYYESGQLVIENIFESRSEIIGQTRYGFKPESLDIELPNLIE 119

Query: 163 ---------IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
                    +  ++G     +  + +      L   + +  C  + I
Sbjct: 120 FIRDGTECLVIDNLGTFALRVPKKKLRDQFDGLNYLVRKKSCTTLLI 166


>gi|307717859|ref|YP_003873391.1| hypothetical protein STHERM_c01420 [Spirochaeta thermophila DSM
           6192]
 gi|306531584|gb|ADN01118.1| hypothetical protein STHERM_c01420 [Spirochaeta thermophila DSM
           6192]
          Length = 447

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 7/132 (5%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           G G +M+L     + +G E + +G    D  LG GG  +G +V + G    GK+TL L  
Sbjct: 51  GSG-VMRLPE--VVAQGEERIVTGVGEFDRVLG-GGLVRGSVVLVGGEPGVGKSTLVLQV 106

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
            A+    G    +   E ++  + AR   +      +      E  +E  + L+R    D
Sbjct: 107 AARLAG-GVKVVYAAGEESVGQVAARAARLGCGKAEVELAA--ETQVESLEALLRQRRAD 163

Query: 148 IIVIDSVAALTP 159
           ++V+DS+  L  
Sbjct: 164 VVVVDSLQMLYS 175


>gi|58260590|ref|XP_567705.1| RAD57 protein [Cryptococcus neoformans var. neoformans JEC21]
 gi|57229786|gb|AAW46188.1| RAD57 protein, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 598

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 7/113 (6%)

Query: 26  VYGKGAIMQ-LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
            YG+GA  +  G + +     + +S+G  GLD  LG GG  +G + EI G  ++GK+  A
Sbjct: 75  DYGQGACERGTGEEMAGKGKGKWISTGDEGLDECLG-GGLRRGCLYEIAGESAAGKSHFA 133

Query: 85  LHTIAQSQ-----KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           L      Q      + G    + +E  L +    +LG  L  +   + +   +
Sbjct: 134 LTLALCCQLSSLTSSPGGSLILTSERELSTDRLIQLGEPLLAVHEPRAEERPE 186


>gi|134117045|ref|XP_772749.1| hypothetical protein CNBK1230 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50255367|gb|EAL18102.1| hypothetical protein CNBK1230 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 598

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 7/113 (6%)

Query: 26  VYGKGAIMQ-LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
            YG+GA  +  G + +     + +S+G  GLD  LG GG  +G + EI G  ++GK+  A
Sbjct: 75  DYGQGACERGTGEEMAGKGKGKWISTGDEGLDECLG-GGLRRGCLYEIAGESAAGKSHFA 133

Query: 85  LHTIAQSQ-----KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           L      Q      + G    + +E  L +    +LG  L  +   + +   +
Sbjct: 134 LTLALCCQLSSLTSSPGGSLILTSERELSTDRLIQLGEPLLAVHEPRAEERPE 186


>gi|254361080|ref|ZP_04977225.1| S16 family peptidase/DNA repair protein RadA [Mannheimia
           haemolytica PHL213]
 gi|153092566|gb|EDN73621.1| S16 family peptidase/DNA repair protein RadA [Mannheimia
           haemolytica PHL213]
          Length = 459

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 57/153 (37%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   SSG   LD  LG GG   G  + I G   +GK+TL L  +    +   T  +V
Sbjct: 70  LQEVPRFSSGFNELDRVLG-GGVVPGSAILIGGHPGAGKSTLLLQVMCGLAQHLPT-LYV 127

Query: 102 DAEHALDSIYARK--LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R   LG+   NL +    + E    I           I+VIDS+  +  
Sbjct: 128 TGEESLQQVAMRANHLGLPTANLKMLSETSVEHICNIA----DQEKPKIMVIDSIQVMHL 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     S     A  +++  +    +I  
Sbjct: 184 SDIQSSPGSVSQVRECASFLTRYAKTRQVAIIM 216


>gi|163848809|ref|YP_001636853.1| circadian clock protein KaiC [Chloroflexus aurantiacus J-10-fl]
 gi|222526762|ref|YP_002571233.1| circadian clock protein KaiC [Chloroflexus sp. Y-400-fl]
 gi|163670098|gb|ABY36464.1| circadian clock protein KaiC [Chloroflexus aurantiacus J-10-fl]
 gi|222450641|gb|ACM54907.1| putative circadian clock protein, KaiC [Chloroflexus sp. Y-400-fl]
          Length = 511

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 1/89 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + IE + +G  G D  +  GG PKGR   + G   S KT  A   +A   K G    FV 
Sbjct: 4   DQIERLPTGITGFDH-IANGGLPKGRTTLVSGTAGSAKTVFAAQFLAAGIKRGEPGVFVT 62

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGE 131
            E   D++    LG               
Sbjct: 63  FEETPDALRRNMLGFGWDIARWEAEGKWA 91



 Score = 43.7 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 13/131 (9%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            ++SG+  LD   G GGF +  IV + G   +GKT +A   +A   +          E +
Sbjct: 251 RITSGNAELDRMCG-GGFFRDSIVLVSGATGTGKTLMATTFMAAGVRQQERSLLFAFEES 309

Query: 107 LDSIYARKLGVDLK----------NLLISQPD--TGEQALEITDMLVRSGAVDIIVIDSV 154
            D ++   +G  +            ++ + P+  + E  L      +       + +DS+
Sbjct: 310 RDQLFRNAIGWGIDFEQMERDGLLRVICNYPEVTSLEDQLIFMKAEIDRFRPQRVAVDSL 369

Query: 155 AALTPRAEIEG 165
           +AL   A I+G
Sbjct: 370 SALERVATIKG 380


>gi|61229406|gb|AAX40988.1| RAD51B [Arabidopsis thaliana]
          Length = 338

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 65/183 (35%), Gaps = 32/183 (17%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCAFV 101
           + +   GLD  L  GG P G + E+ GP   GK+   +                G   ++
Sbjct: 52  LPTHLKGLDYTL-CGGIPFGVLTELVGPPGIGKSQFCMKLALSASFPVAYGGLDGRVIYI 110

Query: 102 DAEHALDSIYARKLGVD---------------LKNLLISQPD---TGEQALEITDMLVRS 143
           D E    S    ++G++                  +L+ +P       ++++     +  
Sbjct: 111 DVESKFSSRRVIEMGLESFPEVFHLKGMAQEMAGRILVLRPTSLANFTESIQELKNSILQ 170

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             V ++VIDS+ AL       G         +   +   +  L S    S+  +V  NQ+
Sbjct: 171 NQVKLLVIDSMTALLSGENKPG-------AQRQPQLGWHISFLKSLAEFSRIPIVVTNQV 223

Query: 204 RMK 206
           R +
Sbjct: 224 RSQ 226


>gi|18202886|sp|Q9F414|RECA_MYCGS RecName: Full=Protein RecA; AltName: Full=Recombinase A; Contains:
           RecName: Full=Mga RecA intein
 gi|10241734|emb|CAC09591.1| RecA protein [Mycobacterium gastri]
          Length = 419

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 75/179 (41%), Gaps = 7/179 (3%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
            SG+  + +  +++  +        D  H LD    +        L+ S   T +     
Sbjct: 247 GSGRIEICVEAMSEGSQVRLRDYLHDT-HGLDVRLRKAGAAAKAVLVFSTAATAK----- 300

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
              LV       +    +     R+ +     E +  +    +++   K    I     I
Sbjct: 301 FQQLVAPYMAPCMAYKLLPRFHGRSMVTPQFVEPIMELMPARVTEIESKTDYPIMSRFDI 360

Query: 197 LVFINQMRMKIGVMFGS-PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254
            V  +      GVM  + PETTTGG ALKFY+SVR+D++R+ ++KD  +   N+TRVK+
Sbjct: 361 EVEGSHNYFADGVMVHNSPETTTGGKALKFYASVRMDVQRIETLKDGTNTVDNRTRVKI 419


>gi|194765033|ref|XP_001964632.1| GF23286 [Drosophila ananassae]
 gi|190614904|gb|EDV30428.1| GF23286 [Drosophila ananassae]
          Length = 234

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 66/195 (33%), Gaps = 29/195 (14%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KT 94
           + E    + +G  G+D   G GG   G I E+ G   +GKT + L+     Q        
Sbjct: 1   MQEEPNKICTGIKGVDENYG-GGISLGHITELIGNSGTGKTQMCLNLCLNVQIPKTAGGL 59

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLK-----------------NLLISQPDTGEQALEIT 137
            G+  F+D     +     +L  +L+                 N+   +  +  Q +   
Sbjct: 60  EGSALFIDTRQDFNPHRLLQLATELERQYAHKVPDFKALKMLKNVYYVRCSSEAQLMASV 119

Query: 138 DML----VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS-QALRKLTSSISR 192
                       + +IVIDS++      E +  M E L  +   + + Q   K+   I+ 
Sbjct: 120 LSCHRHLENHKNIKLIVIDSLSFTLQMIENKSKMFELLLELHESMRNLQRTYKVAWVITN 179

Query: 193 SKCILVFINQMRMKI 207
                V   Q  +  
Sbjct: 180 VLTYRVSKGQFHLVP 194


>gi|146340261|ref|YP_001205309.1| DNA repair protein RadA [Bradyrhizobium sp. ORS278]
 gi|146193067|emb|CAL77078.1| DNA repair protein (DNA repair protein) [Bradyrhizobium sp. ORS278]
          Length = 499

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 58/157 (36%), Gaps = 2/157 (1%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG   QL S          +SSG   LD   G GGF +G I+ + G    GK+TL     
Sbjct: 53  KGRTFQLESLTGKSIDAPRLSSGMTELDRVTG-GGFVRGSILLVGGDPGIGKSTLLTQAT 111

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A   + G    ++  E A+  +  R   + L +  +          +I   L       +
Sbjct: 112 AMMARAGHRAVYISGEEAVAQVRLRAERLGLADAPVQLAA-ETSVEDIISTLSEGTMPRL 170

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           IVIDS+  +            +     A+ + +  +K
Sbjct: 171 IVIDSIQTMWTDTVESAPGTVTQVRASAQKLIRFAKK 207


>gi|146310212|ref|YP_001175286.1| DNA repair protein RadA [Enterobacter sp. 638]
 gi|145317088|gb|ABP59235.1| DNA repair protein RadA [Enterobacter sp. 638]
          Length = 461

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 12/156 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       + +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 64  VQKLSDIS--LDEVPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCRL 120

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 121 SEQ-MKTLYVTGEESLQQVAMRAHRLGLPTGNLNMLSETSIEQICMIAE----EEQPKLM 175

Query: 150 VIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
           VIDS+  +   A+I+   G  +     A  +++  +
Sbjct: 176 VIDSIQVMH-MADIQSSPGSVAQVRETAAYLTRFAK 210


>gi|197120361|ref|YP_002140788.1| DNA repair protein RadA [Geobacter bemidjiensis Bem]
 gi|197089721|gb|ACH40992.1| DNA repair protein RadA [Geobacter bemidjiensis Bem]
          Length = 452

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 8/137 (5%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
              SSGS   D  LG G  P G ++ I G   +GK+T+ L T+           +V  E 
Sbjct: 70  SRFSSGSEEFDRVLGGGFVP-GSVILIGGDPGAGKSTILLQTMC-YAAASKEVLYVSGEE 127

Query: 106 ALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           +L  I   AR+L + L  + +    + E  LE      +S   +++VIDS+  +   A  
Sbjct: 128 SLQQIAGRARRLQLPLDRVKMLAESSVEGVLEAA----KSERPEVVVIDSIQVMQSAALE 183

Query: 164 EGDMGESLPGMQARLMS 180
               G S     A  ++
Sbjct: 184 AAPGGVSQVRECAAALT 200


>gi|15602117|ref|NP_245189.1| DNA repair protein RadA [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720480|gb|AAK02336.1| RadA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 459

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +     SSG   LD  LG GG   G  + I G   +GK+TL L  +        T  +V
Sbjct: 70  LQETPRFSSGFHELDRVLG-GGVVPGSAILIGGHPGAGKSTLLLQVMCGLA-QNMTALYV 127

Query: 102 DAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +   A++LG+    L +    + EQ  ++ D L       IIVIDS+  +  
Sbjct: 128 TGEESLQQVAMRAKRLGLPTDKLNMLSETSVEQICQLADQLKPQ----IIVIDSIQVMHL 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     +     A  +++  +    +I  
Sbjct: 184 ADIQSSPGSVAQVRECASFLTRYAKTRQVAIIM 216


>gi|309791594|ref|ZP_07686088.1| KaiC-like protein [Oscillochloris trichoides DG6]
 gi|308226374|gb|EFO80108.1| KaiC-like protein [Oscillochloris trichoides DG6]
          Length = 486

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 1/123 (0%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
            E +SSG   LD  LG  G+ +G  + I G   +GK++LA   +  + + G T  +V  E
Sbjct: 262 TERISSGVAPLDEMLGGDGYYRGSTILISGTAGTGKSSLAAAFVTGTCERGETALYVSFE 321

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
               +   R +G    NL  +          +   +        ++ D +  + P+  + 
Sbjct: 322 E-SPAQITRNMGSIGINLHRNIKAGRLHFHTVRPTMGGLELHLAMIADRIIRINPQVVVI 380

Query: 165 GDM 167
             +
Sbjct: 381 DPV 383



 Score = 46.4 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
          K  +M+  +       +    SG  G+D+ +  GG P+GR   + G    GKT LA+  +
Sbjct: 6  KDVVMRSTTTPHALPPLPKAPSGIHGIDV-ITEGGLPRGRPTLVCGNAGCGKTLLAMEFL 64

Query: 89 AQSQKT 94
           +    
Sbjct: 65 VRGATE 70


>gi|269468598|gb|EEZ80242.1| ATP-dependent serine protease [uncultured SUP05 cluster bacterium]
          Length = 453

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 90/264 (34%), Gaps = 22/264 (8%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E    +S+G   LD  LG GG   G +V I G    GK+TL L  +A       T  ++ 
Sbjct: 66  ENRARLSTGLTELDRTLG-GGLVDGSVVLIGGDPGIGKSTLILQAMAAIN-KDNTTLYIS 123

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E + + I  R + +++   ++   +T    LE    L +     +IVIDS+  +     
Sbjct: 124 GEESAEQISDRAIRLNIHEDILLLSETH---LEKIIKLAKEVQPKVIVIDSIQTMVTDGS 180

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
                  +     A  ++Q  ++  + +     +         +I            G+A
Sbjct: 181 TSAPGSVTQVRDCAAQLTQFAKQTNTILLMIGHVTKGGALAGPRILEHMVDAVLYFEGDA 240

Query: 223 LKFYSSVRLDIRRVGSIKD---------KDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
              Y  +R    R G++ +               N + + +      SP   V       
Sbjct: 241 GGRYRIIRAVKNRFGAVNEISVFAMGEGGLRQVDNPSAIFLSNQAKPSPGSMVMVT---- 296

Query: 274 EGISFFGELIDLGVKASIVDKSGA 297
                      +    ++VD++G 
Sbjct: 297 ----REATRPLMVEVQALVDQAGG 316


>gi|215489701|ref|YP_002332132.1| DNA repair protein RadA [Escherichia coli O127:H6 str. E2348/69]
 gi|215267773|emb|CAS12235.1| predicted repair protein [Escherichia coli O127:H6 str. E2348/69]
          Length = 460

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 10/155 (6%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 63  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 120 AQQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE----DEQPKLM 174

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           VIDS+  +            +     A  +++  +
Sbjct: 175 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAK 209


>gi|325265655|ref|ZP_08132345.1| DNA repair protein RadA [Kingella denitrificans ATCC 33394]
 gi|324982925|gb|EGC18547.1| DNA repair protein RadA [Kingella denitrificans ATCC 33394]
          Length = 459

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 69/200 (34%), Gaps = 13/200 (6%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +    +G   LD  LG GG   G ++ + G    GK+TL L T+A   K          
Sbjct: 68  EVPREPTGMGELDRVLG-GGLVDGAVILLGGDPGIGKSTLLLQTVALMAKKRKVLYVSGE 126

Query: 104 EHALD-SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           E A   ++ A++LG+D   + +         LE     ++     ++VIDS+  +     
Sbjct: 127 ESAQQVALRAQRLGLDADGVHLLAEI----RLEAVQAALKQHQPAVVVIDSIQTMYSDQI 182

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
                  S     A          T    +    ++F+  +     +             
Sbjct: 183 TSAPGSVSQVRECAAQF-------TRMAKQMGIAMIFVGHVTKDGAIAGPRVLEHMVDTV 235

Query: 223 LKFYSSVRLDIRRVGSIKDK 242
           L F      + R + +IK++
Sbjct: 236 LYFEGDQHSNYRMIRAIKNR 255


>gi|225024333|ref|ZP_03713525.1| hypothetical protein EIKCOROL_01208 [Eikenella corrodens ATCC
           23834]
 gi|224942918|gb|EEG24127.1| hypothetical protein EIKCOROL_01208 [Eikenella corrodens ATCC
           23834]
          Length = 459

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 69/200 (34%), Gaps = 13/200 (6%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +    +G   LD  LG GG   G ++ + G    GK+TL L T+A   K          
Sbjct: 68  EVPREPTGMGELDRVLG-GGLVDGAVILLGGDPGIGKSTLLLQTVALMAKKRKVLYVSGE 126

Query: 104 EHALD-SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           E A   ++ A++LG+D   + +         LE     ++     ++VIDS+  +     
Sbjct: 127 ESAQQVALRAQRLGLDADGVHLLAEI----RLEAVQAALKQHQPAVVVIDSIQTMYSDQI 182

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
                  S     A          T    +    ++F+  +     +             
Sbjct: 183 TSAPGSVSQVRECAAQF-------TRMAKQMGIAMIFVGHVTKDGAIAGPRVLEHMVDTV 235

Query: 223 LKFYSSVRLDIRRVGSIKDK 242
           L F      + R + +IK++
Sbjct: 236 LYFEGDQHSNYRMIRAIKNR 255


>gi|15668429|ref|NP_247225.1| DNA repair and recombination protein RadB [Methanocaldococcus
           jannaschii DSM 2661]
 gi|2500111|sp|Q57702|RADB_METJA RecName: Full=DNA repair and recombination protein radB
 gi|1590984|gb|AAB98241.1| DNA repair protein REC [Methanocaldococcus jannaschii DSM 2661]
          Length = 212

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 80/188 (42%), Gaps = 18/188 (9%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD-- 118
           +G   KG I +IYGP   GKT + +   + +    G   ++D E  L     +++  +  
Sbjct: 7   LGNAEKGIITQIYGPPGVGKTNICI-INSINAVNSGKVIYIDTEGGLSIERIKQIASNNY 65

Query: 119 ---LKNLLISQPDTGEQALEITDMLVR--SGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
              L+N++I       +  +I    +   +    +IV+D++ +L  R E+  +  +++  
Sbjct: 66  KIVLENMIIYNAFDFYEQDKIIQKELPLITNNASLIVVDNITSLY-RLELSDEANKNIM- 123

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY--SSVRL 231
              +++   ++ L      +   ++  NQ+R  +          +GG  L+++    VRL
Sbjct: 124 -LNKMLGNQVKTLLKLAKTNNLAVIITNQVRETVN-----GFEASGGRLLEYWSKCIVRL 177

Query: 232 DIRRVGSI 239
           +      +
Sbjct: 178 EKLNGDRL 185


>gi|134109141|ref|XP_776685.1| hypothetical protein CNBC1760 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259365|gb|EAL22038.1| hypothetical protein CNBC1760 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 324

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 49/162 (30%), Gaps = 17/162 (10%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ--SQKTGGTCAFVDAEHALD 108
           G  GLD  L   G+    ++EI GP   GK+ LALH             C ++D E    
Sbjct: 86  GVKGLDELL--DGWEGVGVLEIAGPRKVGKSLLALHAALNVLIDNPEAICTWMDTEGTFA 143

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
                + G  L+   I    +    + +              +D +     R +    + 
Sbjct: 144 P---ERAGKVLEAWKIENATSVLSRIMVVP---------CFKLDDMYETLGRLKEADRLT 191

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
            +     A  +   +  +         + + IN     I   
Sbjct: 192 NTSAQGHAE-LVTVMEDVADITYSQNIVSIVINSTVTSIPTN 232


>gi|255541250|ref|XP_002511689.1| DNA repair and recombination protein radA, putative [Ricinus
           communis]
 gi|223548869|gb|EEF50358.1| DNA repair and recombination protein radA, putative [Ricinus
           communis]
          Length = 346

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 64/222 (28%), Gaps = 45/222 (20%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAF 100
            +++    LD  LG GG     + EI G    GKT L +      Q        GG   +
Sbjct: 87  RITTSCADLDNILG-GGITCKEVTEIGGLPGIGKTQLGIQLAVNVQIPPYCGGLGGKAVY 145

Query: 101 VDAEHALDSIYA----------------------------RKLGVDLKNLLISQPDTGEQ 132
           +D E +                                   +    L+N+   +  +  +
Sbjct: 146 IDTEGSFMVERVLQVAEASVEDMLEYSRFLRRDLQTCQVATQSKDILENIYYFRVCSYTE 205

Query: 133 ALEI---TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
            + +    +  +       +VI        R + +         ++ R++S    KL   
Sbjct: 206 QVALVNYLEKFISEHRDVKVVIIDSITFHFRQDFDD------LALRTRVLSGMALKLMKI 259

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
                  +V +NQ+  K            G +      + R+
Sbjct: 260 AKSFSLAVVLLNQVTTKHTEGSFQLGLALGES-WSHSCTNRI 300


>gi|187250810|ref|YP_001875292.1| DNA repair protein RadA [Elusimicrobium minutum Pei191]
 gi|186970970|gb|ACC97955.1| DNA repair protein RadA [Elusimicrobium minutum Pei191]
          Length = 454

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 4/89 (4%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           I+ L    ++ E  E+  +G   LD  LG GG  KG+++ + G    GK+TL L T A  
Sbjct: 57  IINLSDTKTLREEREL--TGISELDRLLG-GGIVKGQLILLAGAPGIGKSTLMLQTAASL 113

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLK 120
              G    ++  E +L+ I +R L + ++
Sbjct: 114 -SKGKKVLYISGEESLNQISSRALRLGVE 141


>gi|219847559|ref|YP_002461992.1| circadian clock protein KaiC [Chloroflexus aggregans DSM 9485]
 gi|219541818|gb|ACL23556.1| putative circadian clock protein, KaiC [Chloroflexus aggregans DSM
           9485]
          Length = 514

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 1/89 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + IE + +G  G D  +  GG PKGR   + G   S KT  A   +A   K G    FV 
Sbjct: 4   DQIERLPTGITGFDH-IANGGLPKGRTTLVSGTAGSAKTVFAAQFLAAGIKRGEPGVFVT 62

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGE 131
            E   +++    LG               
Sbjct: 63  FEETPEALRRNMLGFGWDIARWEAEGKWV 91



 Score = 42.1 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 13/129 (10%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           +SG+  LD   G GGF +  IV + G   +GKT +A   +A   +          E + D
Sbjct: 253 TSGNAELDRMCG-GGFFRDSIVLVSGATGTGKTLMATTFMAAGVRQNERSLLFAFEESRD 311

Query: 109 SIYARKLGVDLK----------NLLISQPD--TGEQALEITDMLVRSGAVDIIVIDSVAA 156
            ++   +G  +            ++ + P+  + E  L      +       + +DS++A
Sbjct: 312 QLFRNAIGWGIDFEQMERDGLLRVICNYPEVTSLEDQLIFMKAEIDRFRPQRVAVDSLSA 371

Query: 157 LTPRAEIEG 165
           L   A I+G
Sbjct: 372 LERVATIKG 380


>gi|70606365|ref|YP_255235.1| hypothetical protein Saci_0546 [Sulfolobus acidocaldarius DSM 639]
 gi|68567013|gb|AAY79942.1| conserved protein [Sulfolobus acidocaldarius DSM 639]
          Length = 261

 Score = 49.5 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 94/244 (38%), Gaps = 22/244 (9%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+G    D  +  GG P+G  V + G   +GKT  +LH +AQ  K G  C +V  E +
Sbjct: 3   RLSTGIYEFDKLI-EGGIPQGFFVALTGEPGTGKTIFSLHFVAQGLKEGNPCVYVTTEES 61

Query: 107 LDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI- 163
            DSI   A++ G D +          ++ L I D L++    +  + +  A       I 
Sbjct: 62  RDSIVKQAKQFGWDFEE-------HLDKKLIIIDALMKEKDDEWSLTELTAEELINKVIL 114

Query: 164 ----EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
                G     L       +      L   IS     ++   +  +     +    +   
Sbjct: 115 AKQKLGHGYARLVIDSVSALFLDKPALARKISYYLKRVLNKWKFTIYATSQYAITTSQAF 174

Query: 220 GNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV-EFDIMYGEGISF 278
           G  ++  +   +  RR  S+KD       +  + + K +  +  K + E DI  G+GI  
Sbjct: 175 GFGVEHVADGIIRFRR--SVKDGML----RRYILIEKMRQTNHDKYIWEIDIREGKGIVL 228

Query: 279 FGEL 282
            G+L
Sbjct: 229 IGKL 232


>gi|302769123|ref|XP_002967981.1| hypothetical protein SELMODRAFT_408953 [Selaginella moellendorffii]
 gi|300164719|gb|EFJ31328.1| hypothetical protein SELMODRAFT_408953 [Selaginella moellendorffii]
          Length = 453

 Score = 49.5 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 4/79 (5%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFE---GIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           EA + +I     K   M   S   + E    I  ++SGS  LD  L  GG   G I EIY
Sbjct: 69  EAKVDKITEAATKLVPMGFTSAAQMHEQRSEIIQITSGSKELDKIL-EGGIETGSITEIY 127

Query: 74  GPESSGKTTLALHTIAQSQ 92
           G   +GKT L        Q
Sbjct: 128 GEFRTGKTQLCHTLCVTCQ 146


>gi|188584800|ref|YP_001916345.1| DNA repair protein RadA [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349487|gb|ACB83757.1| DNA repair protein RadA [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 456

 Score = 49.5 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 57/152 (37%), Gaps = 8/152 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E    +S+    LD  LG GG   G +V   G    GK+TL L           +  +V
Sbjct: 68  LEKEPRMSTSIDELDRVLG-GGIVPGSVVLFGGDPGIGKSTLMLQASHNLDTLNFSTLYV 126

Query: 102 DAEHALDS--IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L    +   +LG++ ++LL +        L   +  +      I++IDS+ +L  
Sbjct: 127 SGEESLSQLKLRCERLGLNSESLLFASITD----LRELENRLNEQKPQILIIDSIQSLYT 182

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
             EIE   G          +  ++ K      
Sbjct: 183 -PEIEAPPGSLSQVKHCAAVLHSVAKENEIAC 213


>gi|24215615|ref|NP_713096.1| DNA repair protein RadA [Leptospira interrogans serovar Lai str.
           56601]
 gi|24196770|gb|AAN50114.1| DNA repair protein RadA [Leptospira interrogans serovar Lai str.
           56601]
          Length = 459

 Score = 49.5 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 88/255 (34%), Gaps = 27/255 (10%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E ++ + +G   LD+ LG GG   G +  I G    GK+TL L       +      ++ 
Sbjct: 68  ESLKRMGTGLKELDLVLG-GGLVPGSLTLIGGEPGVGKSTLILEVSRYLTQANKNVLYIS 126

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E +      R     +     +   T E   E    ++      ++ +DS+  +   A 
Sbjct: 127 GEES--PSQIRMRAERMGLRASNLFVTSETIAENISSMIEGENPAVVFVDSIQTIAREA- 183

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           +    G          + +  + L  +  RS   ++    +            T  G   
Sbjct: 184 LPNQAGTVT------QLRECTQVLLETAKRSGIPILMTGHIT--------KEGTIAGPKV 229

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           L+      L         + D +   +  ++ VKN+  +      F++ +  G+   G+ 
Sbjct: 230 LEHLVDTVLYF-------EGDRLNYYRL-LRAVKNRFGAVGDLAIFEM-FSGGLREVGDR 280

Query: 283 IDLGVKASIVDKSGA 297
             + V A   ++SG+
Sbjct: 281 NRVFVSAGAEERSGS 295


>gi|325651039|emb|CBY89341.1| RecA protein [Bradyrhizobium sp. R-46151=t187]
          Length = 110

 Score = 49.5 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 44/57 (77%), Positives = 53/57 (92%)

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           QPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQ 
Sbjct: 1   QPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQR 57


>gi|322834505|ref|YP_004214532.1| DNA repair protein RadA [Rahnella sp. Y9602]
 gi|321169706|gb|ADW75405.1| DNA repair protein RadA [Rahnella sp. Y9602]
          Length = 460

 Score = 49.5 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 64/156 (41%), Gaps = 12/156 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       + +   S+G    D  LG GG   G  + I G   +GK+TL L  +   
Sbjct: 63  VQKLSDIS--LDELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQILCHL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
                   +V  E +L  +  R  +LG+   N+ +    + EQ  EI D         ++
Sbjct: 120 -SENMKTLYVTGEESLQQVAMRAHRLGLPTANMNMLSETSIEQICEIADK----EQPKLM 174

Query: 150 VIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
           VIDS+  +   A+I+   G  +     A  +++  +
Sbjct: 175 VIDSIQVMH-MADIQSSPGTVAQVRETAAYLTRFAK 209


>gi|188996195|ref|YP_001930446.1| DNA repair protein RadA [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931262|gb|ACD65892.1| DNA repair protein RadA [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 448

 Score = 49.5 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 4/117 (3%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            ++  S+G   LD ALG GGF  G++V + G    GK+TL L   +          ++ A
Sbjct: 66  EVKRYSTGFESLDNALG-GGFVDGQVVLVSGEPGVGKSTLLLQISSYFAN-DKKVLYISA 123

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           E +   IY R     L  L  +     E  LE     + +   D+IV+DSV  +   
Sbjct: 124 EESQYQIYIRA--ERLNALKENLYILSETNLEAILQAIENIKPDLIVLDSVQTVYSE 178


>gi|167382024|ref|XP_001735947.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165901853|gb|EDR27840.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 264

 Score = 49.5 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 60/183 (32%), Gaps = 28/183 (15%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---GGT---C 98
           I  + + +  +D  L  GG P G I +I G    GK+ L +      Q     GG    C
Sbjct: 18  IRNIPTFNQQIDQFLN-GGIPLGEITQIVGFPGIGKSQLCMQIACNVQLPEEIGGLNSEC 76

Query: 99  AFVD-------------AE--HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            + D             AE   A    Y   +   LK + + QP            +   
Sbjct: 77  IYYDSYSQFCSFRVQKMAECICASYPEYKLNVKEILKKIHVYQPHDIISLCSSLLSINNK 136

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
                ++I        +  I  D       ++   + + ++ ++   ++    +V +N +
Sbjct: 137 LNKIKLIIIDSIPTFYKKTICND------TIRLAALHRIIQIVSIYSNKFYLSVVIVNHL 190

Query: 204 RMK 206
             K
Sbjct: 191 TTK 193


>gi|14590864|ref|NP_142936.1| hypothetical protein PH1025 [Pyrococcus horikoshii OT3]
 gi|3257439|dbj|BAA30122.1| 236aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 236

 Score = 49.5 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +S+G  GLD  +  GG   GR+  I GP  SGKTT  +  + +  + G   A++ 
Sbjct: 6   ERISTGVKGLDELI-EGGLIPGRVYLITGPPGSGKTTFGMQFLLEGARRGEKVAYIS 61


>gi|281201100|gb|EFA75314.1| AAA ATPase domain-containing protein [Polysphondylium pallidum
           PN500]
          Length = 993

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 69/205 (33%), Gaps = 40/205 (19%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-------KTGGTCA 99
            +S+GS  LD  L  GG     I EI G    GKT LA+    Q+Q         GG   
Sbjct: 604 RLSTGSNVLDRHL-QGGIMPSGITEIVGESGCGKTQLAIQLCIQAQLPFSLGGMEGGAVY 662

Query: 100 FVDAEHALDSIYARKLGVD-------------------------LKNLLISQPDTGEQAL 134
            V   +      ++ +G                             N++I +  T +Q L
Sbjct: 663 IVTESNFPHKRLSQMIGKRRPIIEKLLQRNSENNNSSNSLNIQFEDNIIIHKVPTAQQLL 722

Query: 135 EITDML----VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
            +        +    + ++V+DS+AAL  R+E   +  + +         +   +L    
Sbjct: 723 TVLTQQFAELIFKRTIRLLVVDSIAALV-RSEFGTESKDLIERTNLLW--EISNQLKLIS 779

Query: 191 SRSKCILVFINQMRMKIGVMFGSPE 215
                 +V INQ+           +
Sbjct: 780 EEHGITVVVINQVTDYFDSNNIENQ 804


>gi|209748874|gb|ACI72744.1| probable ATP-dependent protease [Escherichia coli]
          Length = 460

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 10/155 (6%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 63  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVLGSAILIGGNPGAGKSTLLLQTLCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 120 AQQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAE----EEQPKLM 174

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           VIDS+  +            +     A  +++  +
Sbjct: 175 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAK 209


>gi|224475674|ref|YP_002633280.1| DNA repair protein RadA [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222420281|emb|CAL27095.1| DNA repair protein radA [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 456

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 80/230 (34%), Gaps = 27/230 (11%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E    + + S   D  LG GG  +G +V I G    GK+TL L   +          ++ 
Sbjct: 66  ETTPRIKTSSPEFDRVLG-GGIVQGSLVLIGGDPGIGKSTLLLQICSAL-SQNKKVLYIT 123

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E +L+    R   +D  +   +     E  LE+    V+    D++V+DS+  +     
Sbjct: 124 GEESLNQTKLRADRLDEDS--SNLNVFAETDLEVIKEAVKQTEPDLVVVDSIQTIYHPDI 181

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
                  S      +++          I++   I  FI     K G +        G   
Sbjct: 182 NSAPGSVSQVRESTQILMG--------IAKQMNIATFIVGHVTKEGQI-------AGPRL 226

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
           L+      L         + D     +  ++ VKN+  S  +   F++ +
Sbjct: 227 LEHMVDTVLYF-------EGDEHHAYRI-LRAVKNRFGSTNEMGIFEMKH 268


>gi|146340913|ref|YP_001205961.1| circadian clock protein KaiC [Bradyrhizobium sp. ORS278]
 gi|146193719|emb|CAL77736.1| Circadian clock protein kinase KaiC [Bradyrhizobium sp. ORS278]
          Length = 509

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 65/180 (36%), Gaps = 21/180 (11%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           + M+L    S       VSSG   LD   G GG  +  ++ + G   +GKT +  H +  
Sbjct: 243 SAMELQQHSSDI----RVSSGVPELDAMCG-GGIYRDSVILVSGATGTGKTLMVTHYLQA 297

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITD 138
           +  +G     + AE + D +    L   +            ++   P+T   E  L    
Sbjct: 298 AIASGQRAMLIAAEESRDQLTRNALNWGMDFDAAERSGMLRIVARYPETMGLEDHLLYIR 357

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
             +     D I +DS++A     E  G +      + A         +T   + +  +L+
Sbjct: 358 REMADFRPDRIAVDSLSAF----ERAGTIKSYREFVVALTSGIKQFGVTGLFTNTTAMLL 413



 Score = 43.3 bits (100), Expect = 0.054,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 25/140 (17%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT----IAQSQKTGGTCA 99
            +E + +G  G D  +  GG P  R   + G   SGKT LAL      +  + + G    
Sbjct: 8   ELEKLRTGIAGFDQ-IANGGLPLNRTTLVAGTAGSGKTVLALQYLITGVRTTGEHGVCVT 66

Query: 100 FVDAEHALDSIYARKLGVDLKN--------LLISQPDTGEQA-----------LEITDML 140
           F +A   L     R  G +L+N        ++   P+ GE+            L   +  
Sbjct: 67  FEEAPEDLIRN-IRSFGWELENMIARRQVAIVDVTPEDGEETIEAGTFDFSALLARIEAA 125

Query: 141 VRSGAVDIIVIDSVAALTPR 160
           VR+     +++DS+ AL P+
Sbjct: 126 VRNVNAKRLIMDSIGALFPQ 145


>gi|145637473|ref|ZP_01793131.1| DNA repair protein [Haemophilus influenzae PittHH]
 gi|145269279|gb|EDK09224.1| DNA repair protein [Haemophilus influenzae PittHH]
          Length = 458

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +     SSG   LD  LG GG   G  + I G   +GK+TL L  +        T  +V
Sbjct: 69  LQETPRFSSGFSELDRVLG-GGIVPGSAILIGGNPGAGKSTLLLQVMCGLA-KNMTALYV 126

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+    L +    + EQ   + D L       IIV+DS+  +  
Sbjct: 127 TGEESLQQVAMRASRLGLPNDQLKMLSETSVEQICNLADQLKPQ----IIVVDSIQVMHL 182

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     +     A  +++  +    +I  
Sbjct: 183 ADIQSSPGSVAQVRECASFLTRYAKTRQVAIIM 215


>gi|219848051|ref|YP_002462484.1| putative circadian clock protein, KaiC [Chloroflexus aggregans DSM
           9485]
 gi|219542310|gb|ACL24048.1| putative circadian clock protein, KaiC [Chloroflexus aggregans DSM
           9485]
          Length = 482

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 49/151 (32%), Gaps = 2/151 (1%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SG   LD  L  GG  +G I  + GP   GKTTL    + ++   G        E   + 
Sbjct: 247 SGVPELDELLN-GGIERGTITMLSGPSGVGKTTLGFQFMKEAASRGERSIVFSFEEETEI 305

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +  R   V++  +   + +   +  +I  +          V   V        +   M  
Sbjct: 306 MMQRCESVNI-PVRAMRANNMLRIEKIEPLQYNPDEFAQHVRHVVEHDRATVIMIDSMNG 364

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFI 200
               MQ   +   L  L   +      ++ I
Sbjct: 365 YRLCMQGEDLISHLHALCKFLQSRGVTVLLI 395



 Score = 45.6 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 61/176 (34%), Gaps = 15/176 (8%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  +S+G  GLD   G GG        + G   +GKTTL LH +A    TG T  F+  
Sbjct: 5   AITRLSTGIPGLDEITG-GGLVPHYAYLVRGGPGAGKTTLGLHFLAAGTATGETSLFISL 63

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E +   I      + +              L    +L  S + D         +   AE+
Sbjct: 64  EESAAKIRRNAAQIGID-------------LSQVHILDLSPSSDFFAKTETYDIFSPAEV 110

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSIS-RSKCILVFINQMRMKIGVMFGSPETTT 218
           E +          R +  A   L      R     +F  + ++   + F + + TT
Sbjct: 111 EREPLTRQIVDTIRQLHPARVFLDPITQFRYLTPDIFQFRKQVISFLRFLAEQQTT 166


>gi|167646466|ref|YP_001684129.1| DNA repair protein RadA [Caulobacter sp. K31]
 gi|167348896|gb|ABZ71631.1| DNA repair protein RadA [Caulobacter sp. K31]
          Length = 460

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 56/140 (40%), Gaps = 3/140 (2%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
             + +G    D   G GG   G  + I G    GK+TL L  +A++   G  CA++  E 
Sbjct: 69  PRIITGVDEFDRVCG-GGVVPGSAILIGGDPGVGKSTLLLEVVAKASLKGVNCAYISGEE 127

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           A+  I  R   +      +      E +L      ++    D++VIDS+  +   A   G
Sbjct: 128 AVAQIRGRAERMGFAQAPVKLAA--ESSLRDILDGLKRDNFDLVVIDSIQTMWSDAHEAG 185

Query: 166 DMGESLPGMQARLMSQALRK 185
               +     A+ + +  +K
Sbjct: 186 PGTVTQVRACAQELVRLAKK 205


>gi|308061511|gb|ADO03399.1| hypothetical protein HPCU_01075 [Helicobacter pylori Cuz20]
          Length = 391

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 78/224 (34%), Gaps = 24/224 (10%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF-- 100
             IE V +G   LDI +  GG   G+IV + G   +GKT L +  +  +Q+      F  
Sbjct: 144 PPIEKVETGINYLDI-ITEGGIELGQIVLLSGDPEAGKTLLGVQFLMNAQQQHKVTYFGF 202

Query: 101 -VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
                  ++++ ++   +   N  I         L      +      + +IDS   +  
Sbjct: 203 EFSVRKHIETLRSKNFNIKADNYFIDDQSCELNDLISQIRSLSKEGHKVFLIDS--QMKI 260

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           +A I G   E +   +   + +  R L   I       + I Q             T TG
Sbjct: 261 QAPIVGRTIEEIETSKFSALGETARSLQVLI-------ILIVQNSKN------DSYTPTG 307

Query: 220 GNALKFYSSVRLDIRRVGS-----IKDKDSITGNQTRVKVVKNK 258
                  + + + I R+       IKD +    ++  V +   +
Sbjct: 308 SRKGGHEAHLMIRIERIKRNELPHIKDFNERAKHRRIVILKNKQ 351


>gi|37524558|ref|NP_927902.1| DNA repair protein RadA [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36783982|emb|CAE12847.1| DNA repair protein RadA (sms) [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 460

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 10/146 (6%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ Q         +V
Sbjct: 70  LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTMCQLSAQ-MKTLYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+   NL +    + EQ   I +         ++VIDS+  +  
Sbjct: 128 TGEESLQQVAMRAHRLGLPADNLNMLSETSIEQICLIAE----QEQPKLMVIDSIQVMH- 182

Query: 160 RAEIEGDMGE-SLPGMQARLMSQALR 184
            A+I+   G  +     A  +++  +
Sbjct: 183 MADIQSSPGSVAQVRETAAYLTRFAK 208


>gi|293390376|ref|ZP_06634710.1| DNA repair protein RadA [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290950910|gb|EFE01029.1| DNA repair protein RadA [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 457

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +     SSG   LD  LG GG   G  + I G   +GK+TL L  +    +   T  +V
Sbjct: 68  LQETPRFSSGFFELDRVLG-GGVVPGSAILIGGHPGAGKSTLLLQVMCNLSQK-MTALYV 125

Query: 102 DAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +   A++LG+  + L +    + EQ   + D L       IIVIDS+  +  
Sbjct: 126 TGEESLQQVAMRAKRLGLPPEKLNMLSETSVEQICNLADQLKPQ----IIVIDSIQVMHL 181

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     +     A  +++  +    +I  
Sbjct: 182 ADIQSSPGSVAQVRECASFLTRYAKTRQVAIVM 214


>gi|45685353|gb|AAS75434.1| putative Rad51B protein [Chlamydomonas reinhardtii]
          Length = 392

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 90/261 (34%), Gaps = 62/261 (23%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH---TIAQSQK 93
           +Q +  E    + +G   LD AL + G P G I E+ GP   GK+ L+      +A  + 
Sbjct: 72  TQQATAEAPAPLRTGLPTLDGALRL-GVPVGSITELVGPGGVGKSQLSHMLALAVAMPEA 130

Query: 94  TGGTCA---FVDAEHALDSIYARKL--------------------------GVDLKNLLI 124
            GG  A   ++D E    +   +++                          G  L+ + +
Sbjct: 131 LGGLGAGVVYIDTERKFSAPRLQEMVHARVAEAAAAAGPQAAHVLQPLAVQGEVLRRVAV 190

Query: 125 SQPDTGEQAL---EITDMLVRSGAVDIIVIDSVAALTPRAEIEGD--------------M 167
           S P + EQ +   E     V      ++V+DS+AAL  R E                   
Sbjct: 191 STPGSTEQLMQTVENLQHTVLQYRARLVVVDSIAALA-RTEYGNPSSSGASGSVAGGGGG 249

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF-----------GSPET 216
                  + +++ +    L +     +  ++  NQ+  +IG                  T
Sbjct: 250 LVGSIMDRQQVLGRIAASLKALAESLRIPVLVTNQVTTRIGGGGGGGPGPPGSAANGTLT 309

Query: 217 TTGGNALKFYSSVRLDIRRVG 237
              G       ++RL ++R+ 
Sbjct: 310 AALGAKWAHCVNLRLVLQRLQ 330


>gi|310765159|gb|ADP10109.1| DNA repair protein RadA [Erwinia sp. Ejp617]
          Length = 460

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 10/146 (6%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   S+G    D  LG GG   G  + I G   +GK+TL L T+ +    G    +V
Sbjct: 71  LDELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCRLA-EGMKTLYV 128

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+   NL +    + EQ   I +         ++VIDS+  +  
Sbjct: 129 TGEESLQQVAMRAHRLGLPTANLNMLSETSIEQICLIAE----QEQPKLMVIDSIQVMH- 183

Query: 160 RAEIEGDMGE-SLPGMQARLMSQALR 184
            A+I+   G  +     A  +++  +
Sbjct: 184 MADIQSSPGSVAQVRETAAYLTRFAK 209


>gi|292489442|ref|YP_003532329.1| DNA repair protein radA [Erwinia amylovora CFBP1430]
 gi|292898343|ref|YP_003537712.1| DNA repair protein [Erwinia amylovora ATCC 49946]
 gi|291198191|emb|CBJ45297.1| DNA repair protein [Erwinia amylovora ATCC 49946]
 gi|291554876|emb|CBA22783.1| DNA repair protein radA homolog [Erwinia amylovora CFBP1430]
 gi|312173609|emb|CBX81863.1| DNA repair protein radA homolog [Erwinia amylovora ATCC BAA-2158]
          Length = 460

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 10/146 (6%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   S+G    D  LG GG   G  + I G   +GK+TL L T+ +    G    +V
Sbjct: 71  LDELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCRLA-EGMKTLYV 128

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+   NL +    + EQ   I +         ++VIDS+  +  
Sbjct: 129 TGEESLQQVAMRAHRLGLPTANLNMLSETSIEQICLIAE----QEQPKLMVIDSIQVMH- 183

Query: 160 RAEIEGDMGE-SLPGMQARLMSQALR 184
            A+I+   G  +     A  +++  +
Sbjct: 184 MADIQSSPGSVAQVRETAAYLTRFAK 209


>gi|259907344|ref|YP_002647700.1| DNA repair protein RadA [Erwinia pyrifoliae Ep1/96]
 gi|224962966|emb|CAX54447.1| DNA repair protein radA (DNA repair protein sms) [Erwinia
           pyrifoliae Ep1/96]
 gi|283477166|emb|CAY73073.1| DNA repair protein radA homolog [Erwinia pyrifoliae DSM 12163]
          Length = 460

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 10/146 (6%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   S+G    D  LG GG   G  + I G   +GK+TL L T+ +    G    +V
Sbjct: 71  LDELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCRLA-EGMKTLYV 128

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+   NL +    + EQ   I +         ++VIDS+  +  
Sbjct: 129 TGEESLQQVAMRAHRLGLPTANLNMLSETSIEQICLIAE----QEQPKLMVIDSIQVMH- 183

Query: 160 RAEIEGDMGE-SLPGMQARLMSQALR 184
            A+I+   G  +     A  +++  +
Sbjct: 184 MADIQSSPGSVAQVRETAAYLTRFAK 209


>gi|254166817|ref|ZP_04873671.1| KaiC domain protein [Aciduliprofundum boonei T469]
 gi|197624427|gb|EDY36988.1| KaiC domain protein [Aciduliprofundum boonei T469]
          Length = 227

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 55/161 (34%), Gaps = 14/161 (8%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE-- 104
            + +G  GLD  L  GG PKG  V + G   +GKTT A+  I +    G  C F+  E  
Sbjct: 2   RIKTGIEGLDDMLN-GGIPKGHTVAVIGAFGTGKTTFAMQFIWEGLINGERCIFLSLEED 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
                  A K G D    L SQ    +   E     V     D      +  L    E  
Sbjct: 61  EDSVVESASKFGWDYSKYLGSQLQLLKLDPEDAKSSVERLESD------IPELIKEFEAT 114

Query: 165 GDMGES-----LPGMQARLMSQALRKLTSSISRSKCILVFI 200
               +S     +         + + KL  SI  S    VF 
Sbjct: 115 RIAVDSISLITMMYDSIDEKRKVVFKLAKSIKESGATAVFT 155


>gi|293392956|ref|ZP_06637273.1| DNA repair protein RadA [Serratia odorifera DSM 4582]
 gi|291424490|gb|EFE97702.1| DNA repair protein RadA [Serratia odorifera DSM 4582]
          Length = 459

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 12/156 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G L  D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 63  VQRLSDIS--LEELPRFSTGFLEFDRVLG-GGVVPGSAILIGGSPGAGKSTLLLQTLCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +L +   NL +    + EQ   I +         ++
Sbjct: 120 SEQ-MKTLYVTGEESLQQVAMRAHRLALPTDNLNMLSETSIEQICLIAE----QEQPRLM 174

Query: 150 VIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
           VIDS+  +   A+I+   G  +     A  +++  +
Sbjct: 175 VIDSIQVMH-MADIQSSPGSVAQVRETAAYLTRFAK 209


>gi|149051556|gb|EDM03729.1| similar to RAD51-like 1 (predicted), isoform CRA_b [Rattus
           norvegicus]
          Length = 258

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 63/190 (33%), Gaps = 27/190 (14%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI----- 88
           +L ++ S       +S+    LD AL  GG P G + E+ GP   GKT   +        
Sbjct: 69  ELKTRRSAHLSPAFLSTTLGALDEAL-HGGVPCGSLTEVTGPPGCGKTQFCIMMSVLATL 127

Query: 89  -AQSQKTGGTCAFVDAEHALDSIYARKL------------------GVDLKNLLISQPDT 129
             +     G   ++D E A  +    ++                     +        + 
Sbjct: 128 PTRLGGLEGAVLYIDTESAFTAERLVEIAESRFPQYFNTEEKLLLTSSRVHLCQELTCEG 187

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
             Q LE  +  + S  V ++++DS+A++  +       G      + + + +    L   
Sbjct: 188 LLQRLESLEEEIISKGVKLVIVDSIASVVRKEFDPQLQGN--IKERNKFLGKGASLLKYL 245

Query: 190 ISRSKCILVF 199
                  + F
Sbjct: 246 SGEFSVPVTF 255


>gi|15679105|ref|NP_276222.1| circadian clock protein KaiC [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622195|gb|AAB85583.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 470

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 88/257 (34%), Gaps = 34/257 (13%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           FE IE   +G  GLD+ +  GGFP+GR   IYG   +GKT +A+  + +     G    +
Sbjct: 3   FENIEKAPTGIKGLDM-ITEGGFPRGRNTLIYGGPGTGKTFIAMEFLLKGASVYGEPGVM 61

Query: 102 ---------------DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM----LVR 142
                           ++  L+ +    L           PD G  +LE   +     +R
Sbjct: 62  VSFDEAMENLIENFRSSDRLLERLIDEGLLFIEDASRGMDPDAGSYSLEALKLRLEDAIR 121

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                 +V+D V  L    E +G +G              LR+L   ++      VF + 
Sbjct: 122 RTGARRVVLDKVDNLFDGTERQGMIG------------FELRELIRWLNGMGVTSVFTSG 169

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
                         +     L      ++  R +  +K + S  G      ++  + AS 
Sbjct: 170 DYGGSPTHRLEEYISDCVIHLTHTFEGQVGTRHLRIVKYRGSGHGLNRYPFIITRRGASI 229

Query: 263 FKQVEFDIMYGEGISFF 279
           F      + Y   +S  
Sbjct: 230 FPITSISLDY--SVSRE 244



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 78/258 (30%), Gaps = 36/258 (13%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E+VS+G   LD  LG GG  +G  V + G   +GKT+L      +S + G  C F   E 
Sbjct: 244 ELVSTGIPTLDEMLG-GGVYRGSAVLVSGTTGAGKTSLLSKFAYESCRRGERCLFFSNEE 302

Query: 106 ALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID---SVAALTPR 160
             D I      +G+ L   L  +            +      +  +++D       + P 
Sbjct: 303 PADQIVRNMESIGIKLGEFLGDKLLIHSDRPTSLGLEAHLTYMQDLIMDFNPDSVLVDPV 362

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
             + G  G   P  +         +LT  +       +F   +           + ++  
Sbjct: 363 TGLAGAGG--SPETRNENAKHLFIRLTDFLKGRGITSIFSYLIASPFTATTTELKLSSLI 420

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
           +      S+R +     S++             +    M       E             
Sbjct: 421 DTWIVLESIRANGEYRRSLR------------ILKSRGMNHSSSVAEVRF---------- 458

Query: 281 ELIDLGVKASIVDKSGAW 298
                     I+ K G+W
Sbjct: 459 ------TDRGILIKGGSW 470


>gi|188532820|ref|YP_001906617.1| DNA repair protein RadA [Erwinia tasmaniensis Et1/99]
 gi|188027862|emb|CAO95719.1| DNA repair protein radA (DNA repair protein sms) [Erwinia
           tasmaniensis Et1/99]
          Length = 460

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 10/146 (6%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   S+G    D  LG GG   G  + I G   +GK+TL L T+ +    G    +V
Sbjct: 71  LDELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKLA-EGMKTLYV 128

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+   NL +    + EQ   I +         ++VIDS+  +  
Sbjct: 129 TGEESLQQVAMRAHRLGLPTANLNMLSETSIEQICLIAE----QEQPKLMVIDSIQVMH- 183

Query: 160 RAEIEGDMGE-SLPGMQARLMSQALR 184
            A+I+   G  +     A  +++  +
Sbjct: 184 MADIQSSPGSVAQVRETAAYLTRFAK 209


>gi|329123996|ref|ZP_08252543.1| DNA repair protein RadA [Haemophilus aegyptius ATCC 11116]
 gi|327467421|gb|EGF12919.1| DNA repair protein RadA [Haemophilus aegyptius ATCC 11116]
          Length = 475

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +     SSG   LD  LG GG   G  + I G   +GK+TL L  +        T  +V
Sbjct: 86  LQETPRFSSGFNELDRVLG-GGIVPGSAILIGGHPGAGKSTLLLQVMCGLA-KNMTALYV 143

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+    L +    + EQ   + D L       IIV+DS+  +  
Sbjct: 144 TGEESLQQVAMRASRLGLPNDQLKMLSETSVEQICNLADQLKPQ----IIVVDSIQVMHL 199

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     +     A  +++  +    +I  
Sbjct: 200 ADIQSSPGSVAQVRECASFLTRYAKTRQVAIIM 232


>gi|298250219|ref|ZP_06974023.1| Non-specific serine/threonine protein kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297548223|gb|EFH82090.1| Non-specific serine/threonine protein kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 526

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 63/183 (34%), Gaps = 8/183 (4%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   LDI LG GG PKG +  I G   SGKTTLA        + G     + A     S
Sbjct: 24  TGVPQLDIVLG-GGLPKGSLAIILGSPGSGKTTLASQIAFSVARHGQKALLLTA----LS 78

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT--PRAEIEGDM 167
               KL   L++     P+     ++I  +        +     + A     RA +    
Sbjct: 79  EPTTKLLSHLQSYSFFAPELVGNEVQIFSIQQFLTQGKLPAAQDIVAAVRQTRANLVVLD 138

Query: 168 G-ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           G +++  ++   ++            S      I             PE TTG   +  Y
Sbjct: 139 GFQAIRALEPDFVTSRQLLYDLGARLSLLGTTTIITTEADPRDPTLFPEMTTGDLLIGLY 198

Query: 227 SSV 229
            ++
Sbjct: 199 FTL 201



 Score = 40.6 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           G L LD  LG GG  +     + G   +GKT LAL     +   G    F+      D +
Sbjct: 265 GLLELDTLLG-GGLTRRTSTLLAGSLGTGKTLLALQFALSAIPKGEKTLFLSFRETRDQL 323

Query: 111 YARKLGVDLKN 121
             +     L  
Sbjct: 324 LLKAESFHLGE 334


>gi|229847087|ref|ZP_04467192.1| DNA repair protein RadA [Haemophilus influenzae 7P49H1]
 gi|229809916|gb|EEP45637.1| DNA repair protein RadA [Haemophilus influenzae 7P49H1]
          Length = 458

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +     SSG   LD  LG GG   G  + I G   +GK+TL L  +        T  +V
Sbjct: 69  LQETPRFSSGFNELDRVLG-GGIVPGSAILIGGHPGAGKSTLLLQVMCGLA-KNMTALYV 126

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+    L +    + EQ   + D L       IIV+DS+  +  
Sbjct: 127 TGEESLQQVAMRASRLGLPNDQLKMLSETSVEQICNLADQLKPQ----IIVVDSIQVMHL 182

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     +     A  +++  +    +I  
Sbjct: 183 ADIQSSPGSVAQVRECASFLTRYAKTRQVAIIM 215


>gi|147921252|ref|YP_684934.1| ATPase [uncultured methanogenic archaeon RC-I]
 gi|110620330|emb|CAJ35608.1| predicted ATPase (RecA family) [uncultured methanogenic archaeon
           RC-I]
          Length = 491

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 1/79 (1%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
           G + V++G  GLD  L  GG PKG  V + GP  +GKT LAL         G    FV  
Sbjct: 14  GKDTVTTGIEGLDELL-CGGLPKGSTVLLSGPPGAGKTVLALQYAFYHASRGERVLFVST 72

Query: 104 EHALDSIYARKLGVDLKNL 122
              L  +      +   NL
Sbjct: 73  CEPLYKVNRYASSLSFYNL 91


>gi|45657026|ref|YP_001112.1| DNA repair protein RadA [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|45600263|gb|AAS69749.1| RadA [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
          Length = 459

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 88/255 (34%), Gaps = 27/255 (10%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E ++ + +G   LD+ LG GG   G +  I G    GK+TL L       +      ++ 
Sbjct: 68  ESLKRMGTGLKELDLVLG-GGLVPGSLTLIGGEPGVGKSTLILEVSRYLTQANKNVLYIS 126

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E +      R     +     +   T E   E    ++      ++ +DS+  +   A 
Sbjct: 127 GEES--PSQIRMRAERMGLRASNLFVTSETIAENISSMIEGEKPAVVFVDSIQTIAREA- 183

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           +    G          + +  + L  +  RS   ++    +            T  G   
Sbjct: 184 LPNQAGTVT------QLRECTQVLLETAKRSGIPILMTGHIT--------KEGTIAGPKV 229

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           L+      L         + D +   +  ++ VKN+  +      F++ +  G+   G+ 
Sbjct: 230 LEHLVDTVLYF-------EGDRLNYYRL-LRAVKNRFGAVGDLAIFEM-FSGGLREVGDR 280

Query: 283 IDLGVKASIVDKSGA 297
             + V A   ++SG+
Sbjct: 281 NRVFVSAGAEERSGS 295


>gi|145639906|ref|ZP_01795506.1| hypothetical protein CGSHiII_00512 [Haemophilus influenzae PittII]
 gi|145641747|ref|ZP_01797323.1| hypothetical protein CGSHiR3021_02309 [Haemophilus influenzae
           R3021]
 gi|319776488|ref|YP_004138976.1| repair protein [Haemophilus influenzae F3047]
 gi|145270997|gb|EDK10914.1| hypothetical protein CGSHiII_00512 [Haemophilus influenzae PittII]
 gi|145273561|gb|EDK13431.1| hypothetical protein CGSHiR3021_02309 [Haemophilus influenzae
           22.4-21]
 gi|309751085|gb|ADO81069.1| DNA repair protein RadA [Haemophilus influenzae R2866]
 gi|317451079|emb|CBY87312.1| predicted repair protein [Haemophilus influenzae F3047]
          Length = 458

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +     SSG   LD  LG GG   G  + I G   +GK+TL L  +        T  +V
Sbjct: 69  LQETPRFSSGFNELDRVLG-GGIVPGSAILIGGHPGAGKSTLLLQVMCGLA-KNMTALYV 126

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+    L +    + EQ   + D L       IIV+DS+  +  
Sbjct: 127 TGEESLQQVAMRASRLGLPNDQLKMLSETSVEQICNLADQLKPQ----IIVVDSIQVMHL 182

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     +     A  +++  +    +I  
Sbjct: 183 ADIQSSPGSVAQVRECASFLTRYAKTRQVAIIM 215


>gi|156062294|ref|XP_001597069.1| hypothetical protein SS1G_01263 [Sclerotinia sclerotiorum 1980]
 gi|154696599|gb|EDN96337.1| hypothetical protein SS1G_01263 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 493

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 68/196 (34%), Gaps = 26/196 (13%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG- 95
           S   + +  EV+S+    +D ALG GG P G I EI G   +GKT   L  +  +Q    
Sbjct: 98  SGKDVVDKWEVISTLDDDMDRALG-GGIPTGYITEITGESGAGKTQFLLTLLLSAQLPAP 156

Query: 96  ----GTCAFVDAEHALDSIYARKLGVDLKNLLISQP----------------DTGEQALE 135
                   ++  E +L +    ++ +    LL S P                ++ +  L 
Sbjct: 157 YGLTAPTLYISTESSLPTTRLSQI-LRTHPLLASHPSPPSLDKIISIVTPDLESQDHILR 215

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGD---MGESLPGMQARLMSQALRKLTSSISR 192
               +        ++I    A   RAE E      G      ++  + +  + L      
Sbjct: 216 FQVPVAIKRHGIRLLILDSVAANYRAEFERPGMTKGGGNMAQRSAELVKLGQLLRDLARE 275

Query: 193 SKCILVFINQMRMKIG 208
               +V  NQ+  +  
Sbjct: 276 FGVAIVVANQVADRFT 291


>gi|255966026|gb|ACU45298.1| DNA repair protein-like [Karlodinium veneficum]
          Length = 349

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 56/310 (18%), Positives = 102/310 (32%), Gaps = 67/310 (21%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           S AL+ A S   R +G G  + LGS G++        SGSL             G+ +E+
Sbjct: 69  STALDLAKS---RKHG-GTPVPLGSLGAVV-------SGSL------------SGKFMEV 105

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK------LGVDLKNLLISQ 126
            GP   GKT   LH  A +   GG   ++D+E+        +      +     N+  ++
Sbjct: 106 AGPPGVGKTQFCLHIAALAAANGGEVFWLDSENTFAPPRLLEVLEAVCIARSAGNIHEAE 165

Query: 127 PDTGEQALEITDMLVRS-------------------GAVDIIVIDSVAALTPRAEIEGDM 167
            +       +      S                       ++++DSVAA+        + 
Sbjct: 166 AEALAALARVRKKSCTSLKELHNIAAELEQRAAQGVPVPALVIVDSVAAIARNDGDASEP 225

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCI-----LVFINQMRMKIGVMFGSPETTTGGNA 222
                  +   +S         ++ +        +V  NQ+                G+ 
Sbjct: 226 QRVQIPRRQAALSAIAGLFKRIVASTNQSLAPPGVVVTNQVAGDPRSGGSRVTL---GHV 282

Query: 223 LKFYSSVRLDIR-------RVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275
                + RL +        R   +K+     G++  + V K+  + P    EF I    G
Sbjct: 283 WHHAVNWRLVLSHLPPGDPRGYGLKESA--VGSKRFLHVEKSPCSPPITI-EFAIC-RNG 338

Query: 276 ISFFGELIDL 285
           +S    + D+
Sbjct: 339 LSEICTIGDV 348


>gi|270263869|ref|ZP_06192137.1| DNA repair protein RadA [Serratia odorifera 4Rx13]
 gi|270042062|gb|EFA15158.1| DNA repair protein RadA [Serratia odorifera 4Rx13]
          Length = 461

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 12/156 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       + +   S+G L  D  LG GG   G  + I G   +GK+TL L  + + 
Sbjct: 63  VQKLSDIS--LDELPRFSTGFLEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQVLCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 120 SEQ-MKTLYVTGEESLQQVAMRAHRLGLPTGNLNMLSETSIEQICLIAE----QEQPKLM 174

Query: 150 VIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
           VIDS+  +   A+I+   G  +     A  +++  +
Sbjct: 175 VIDSIQVMH-MADIQSSPGSVAQVRETAAYLTRFAK 209


>gi|148826115|ref|YP_001290868.1| DNA repair protein RadA [Haemophilus influenzae PittEE]
 gi|148716275|gb|ABQ98485.1| hypothetical protein CGSHiEE_05590 [Haemophilus influenzae PittEE]
          Length = 458

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +     SSG   LD  LG GG   G  + I G   +GK+TL L  +        T  +V
Sbjct: 69  LQETPRFSSGFSELDRVLG-GGIVPGSAILIGGHPGAGKSTLLLQVMCGLA-KNMTALYV 126

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+    L +    + EQ   ++D L       IIV+DS+  +  
Sbjct: 127 TGEESLQQVAMRASRLGLPNDQLKMLSETSVEQICNLSDQLKPQ----IIVVDSIQVMHL 182

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     +     A  +++  +    +I  
Sbjct: 183 ADIQSSPGSVAQVRECASFLTRYAKTRQVAIIM 215


>gi|258513610|ref|YP_003189832.1| DNA repair protein RadA [Desulfotomaculum acetoxidans DSM 771]
 gi|257777315|gb|ACV61209.1| DNA repair protein RadA [Desulfotomaculum acetoxidans DSM 771]
          Length = 457

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 68/189 (35%), Gaps = 11/189 (5%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            + +G   +D  LG GG   G ++ + G    GK+TL L       K      +V  E +
Sbjct: 68  RIPTGIKEMDRVLG-GGIVPGSLILLGGEPGIGKSTLLLQVAFLIGKDNREVIYVCGEES 126

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           +  +  R     L ++  +     E  ++  ++ ++     +++IDSV  +   +     
Sbjct: 127 MQQVRLRA--ERLNSISENVLLLAENNVDRVELQIKERKPFLVIIDSVQTIYKESLSSSP 184

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
                    A  + +        +++     +F+     K G + G        +A+ ++
Sbjct: 185 GSVGQVRECASQLMR--------LAKMMDTAIFLVGHVTKDGAIAGPKVLEHMVDAVLYF 236

Query: 227 SSVRLDIRR 235
              R    R
Sbjct: 237 EGERHQSFR 245


>gi|254422686|ref|ZP_05036404.1| circadian clock protein KaiC [Synechococcus sp. PCC 7335]
 gi|196190175|gb|EDX85139.1| circadian clock protein KaiC [Synechococcus sp. PCC 7335]
          Length = 521

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 74/219 (33%), Gaps = 33/219 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG   LD   G GGF +  I+   G   +GKT L  + +A + 
Sbjct: 256 MRLTQRSSNV----RVSSGVKTLDEMCG-GGFFRDSIILATGATGTGKTLLVSNFLANAC 310

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
           + G        E +   +        +            ++ + P++   E  L+I    
Sbjct: 311 ENGERAILFAYEESRSQLARNASSWGIDLEVLERQGLLKIICAYPESAGLEDHLQIIKSQ 370

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 371 IAEFRPSRIAIDSLSAL-------------DRGVSNNAFRQFVIGVTGFAKQEEITGFFT 417

Query: 201 N---QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           N   Q      +      T T    +  Y  VR ++ R 
Sbjct: 418 NTTEQFMGSHSITDSHISTITDTILMLQYVEVRGEMSRA 456



 Score = 39.4 bits (90), Expect = 0.91,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 39 GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +  +G++ + +   G D  +  GG P GR   + G   +GKT LA+  +  
Sbjct: 16 QTRLKGVQKIRTMIEGFDD-ISHGGLPVGRSTLVSGTSGTGKTLLAVQFLYH 66


>gi|146281329|ref|YP_001171482.1| DNA repair protein RadA [Pseudomonas stutzeri A1501]
 gi|145569534|gb|ABP78640.1| DNA repair protein RadA [Pseudomonas stutzeri A1501]
 gi|327479505|gb|AEA82815.1| DNA repair protein RadA [Pseudomonas stutzeri DSM 4166]
          Length = 453

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 55/144 (38%), Gaps = 4/144 (2%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E +   S+ S  LD  LG GG   G +V I G    GK+T+ L T+    +      +V
Sbjct: 65  VEEVPRFSTASGELDRVLG-GGLVDGSVVLIGGDPGIGKSTILLQTLCAIAQRFP-ALYV 122

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
             E +   +  R   +DL           E  +E      R+    ++VIDS+  +    
Sbjct: 123 TGEESQQQVAMRARRLDLPQ--DRLKVMTETCIESIIATARAEKPKVMVIDSIQTIFTEQ 180

Query: 162 EIEGDMGESLPGMQARLMSQALRK 185
                 G +     A L+ +  ++
Sbjct: 181 LQSAPGGVAQVRESAALLVRFAKQ 204


>gi|282165221|ref|YP_003357606.1| hypothetical protein MCP_2551 [Methanocella paludicola SANAE]
 gi|282157535|dbj|BAI62623.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 464

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
           G+  V++   G D  LG GG PKG  V + GP  SGKT +AL       + GG   FV  
Sbjct: 2   GLATVNTDIAGFDALLG-GGIPKGSTVLVSGPPGSGKTVMALQYTFNQARKGGRVLFVST 60

Query: 104 EHALDSI 110
              L SI
Sbjct: 61  CELLYSI 67


>gi|329890150|ref|ZP_08268493.1| DNA repair protein RadA [Brevundimonas diminuta ATCC 11568]
 gi|328845451|gb|EGF95015.1| DNA repair protein RadA [Brevundimonas diminuta ATCC 11568]
          Length = 457

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 3/139 (2%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
             + +G    D   G GG   G  + + G    GK+TL L   A++ + G   A++  E 
Sbjct: 69  PRIVTGVTEFDRVCG-GGVVPGSAILLGGDPGVGKSTLLLEVTAKAARNGAKVAYISGEE 127

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           A++ I AR   + + +  +S       AL      ++    DI++IDS+  L   A   G
Sbjct: 128 AIEQIRARAKRMGVADADVSLAS--ATALRDILTTLKRDPFDIVIIDSIQTLWSDAHDAG 185

Query: 166 DMGESLPGMQARLMSQALR 184
               +     A  + +  +
Sbjct: 186 PGSITQVRACAAELVRLAK 204


>gi|254282571|ref|ZP_04957539.1| conserved hypothetical protein [gamma proteobacterium NOR51-B]
 gi|219678774|gb|EED35123.1| conserved hypothetical protein [gamma proteobacterium NOR51-B]
          Length = 276

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 1/128 (0%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE-SSGKTTLALHTIAQSQKTGGT 97
            S + G + V +G   LD A+ +GG+P+   +E+       G   L + T+ +  + G  
Sbjct: 67  NSDWHGTDSVPTGYTSLDNAIQLGGWPQRGSIEVLSDSCGMGSMGLFMPTMEKLSEQGRW 126

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            AF+   +   +      G+D + +L+  P   E+ L  T+  +RS     +     A  
Sbjct: 127 QAFIAPPYTPYAPLLAARGIDTRQILMVHPRNREELLWATEQALRSTTCSAVFSWLGATA 186

Query: 158 TPRAEIEG 165
              +E+  
Sbjct: 187 FRYSELRK 194


>gi|327400705|ref|YP_004341544.1| putative circadian clock protein KaiC [Archaeoglobus veneficus
           SNP6]
 gi|327316213|gb|AEA46829.1| putative circadian clock protein, KaiC [Archaeoglobus veneficus
           SNP6]
          Length = 477

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 89/262 (33%), Gaps = 26/262 (9%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
                   +VVS+G+  LD  LG GG  +G  V I G    GKT   L  + ++ + G  
Sbjct: 236 NAEKKVEKKVVSTGNKRLDSMLG-GGIYEGSDVLIAGKSGVGKTNTCLQVLIENDRRGRA 294

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
                 E +        +   L+ L   +P        ++   +  G    +V++ V  L
Sbjct: 295 GILYSFEES-----EEVIAHRLETLFNYRPSKLVVK-HLSPYGMNLGRFYRMVVEDVETL 348

Query: 158 TPRAEIEGDMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPET 216
            P       +       + A  +++A+  L S +S      + I Q             T
Sbjct: 349 NPGVVAIDPINSLQRMTLSAEELTRAIELLASYLSAKG---IIILQTFEVSQAADVFHFT 405

Query: 217 TTG-GNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA-SPFKQVEFDIMYGE 274
             G      +    R        +K           + V+KN+           +I  GE
Sbjct: 406 GGGISYLCDYLILGRYMELNGELLK----------VIAVMKNRFGDHERTLRILEIKSGE 455

Query: 275 GISFFGELI--DLGVKASIVDK 294
           G+   GE +    G+ + +++K
Sbjct: 456 GL-RIGEPLKNYTGLMSGVLEK 476



 Score = 45.2 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 3/78 (3%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF--VDA 103
           E + SG  G D  L  GG  +G    + G   SGKT   L  + +  K G    +   D 
Sbjct: 3   EKIPSGVPGFDEIL-RGGLERGWAYLLKGGPGSGKTIFGLQFLLEGAKRGEKVVYVSFDE 61

Query: 104 EHALDSIYARKLGVDLKN 121
                 + A   G  L +
Sbjct: 62  PKEEVQLQAESFGWSLDH 79


>gi|289596232|ref|YP_003482928.1| putative circadian clock protein, KaiC [Aciduliprofundum boonei
           T469]
 gi|289534019|gb|ADD08366.1| putative circadian clock protein, KaiC [Aciduliprofundum boonei
           T469]
          Length = 229

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 55/161 (34%), Gaps = 14/161 (8%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE-- 104
            + +G  GLD  L  GG PKG  V + G   +GKTT A+  I +    G  C F+  E  
Sbjct: 4   RIKTGIEGLDDMLN-GGIPKGHTVAVIGAFGTGKTTFAMQFIWEGLINGERCIFLSLEED 62

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
                  A K G D    L SQ    +   E     V     D      +  L    E  
Sbjct: 63  EDSVVESASKFGWDYSKYLGSQLQLLKLDPEDAKSSVERLESD------IPELIKEFEAT 116

Query: 165 GDMGES-----LPGMQARLMSQALRKLTSSISRSKCILVFI 200
               +S     +         + + KL  SI  S    VF 
Sbjct: 117 RIAVDSISLITMMYDSIDEKRKVVFKLAKSIKESGATAVFT 157


>gi|262274854|ref|ZP_06052665.1| DNA repair protein RadA [Grimontia hollisae CIP 101886]
 gi|262221417|gb|EEY72731.1| DNA repair protein RadA [Grimontia hollisae CIP 101886]
          Length = 459

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 56/153 (36%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   +SG   LD  LG GG   G  + I G   +GK+TL L T+           +V
Sbjct: 69  LQEVPRFTSGFKELDRVLG-GGIVPGAAILIGGNPGAGKSTLLLQTMCWLASQ-MPTLYV 126

Query: 102 DAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +   A +LG+    L +      E    I           I+VIDS+  +  
Sbjct: 127 TGEESLQQVAMRAERLGLPKDKLKMLSETNVETICSIART----EQPKIMVIDSIQVMHC 182

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     +     A  +++  ++   +I  
Sbjct: 183 ADVASAPGSVAQVRESAAALTRYAKQHNVAIFM 215


>gi|237756460|ref|ZP_04584996.1| DNA repair protein RadA [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691374|gb|EEP60446.1| DNA repair protein RadA [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 285

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 4/117 (3%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            ++  S+G   LD ALG GGF  G++V + G    GK+TL L   +          ++ A
Sbjct: 66  EVKRYSTGFESLDNALG-GGFVDGQVVLVSGEPGVGKSTLLLQISSYFAN-DKKVLYISA 123

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           E +   IY R     L  L  +     E  LE     + +   D+IV+DSV  +   
Sbjct: 124 EESQYQIYIRA--ERLNALKENLYILSETNLEAILQAIENIKPDLIVLDSVQTVYSE 178


>gi|194217280|ref|XP_001501542.2| PREDICTED: similar to Trad [Equus caballus]
          Length = 318

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 70/247 (28%), Gaps = 23/247 (9%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGT 97
             +     ++S+G   LD  L   G   G + EI G   SGKT + L   A         
Sbjct: 63  EELKTSTAILSTGIESLDKLL-DAGLYTGEVTEIVGGPGSGKTQVCLCVAANVAHGLQQN 121

Query: 98  CAFVDAEHAL------------DSIYARKLGV--DLKNLLISQPDTGEQALEITDMLVRS 143
             ++D+   L                  + G    ++ +          AL+     V  
Sbjct: 122 VLYIDSSGGLTGSRLLQLLQARTPDEEEQAGALQRIQVVHAFDIFQMLDALQDLRSTVAQ 181

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
                     V  +     +   +          LM Q  ++L +        +V  N M
Sbjct: 182 RVSGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQLAQELKTLARDLGLAVVVTNHM 241

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
                           G +  F  S R+ +       +    +G+Q    ++K+      
Sbjct: 242 TR---ERDSGKLKPALGRSWSFVPSTRILLDTG----EGAGASGSQRTACLIKSPRLPTG 294

Query: 264 KQVEFDI 270
            Q   DI
Sbjct: 295 FQETVDI 301


>gi|171683343|ref|XP_001906614.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941631|emb|CAP67285.1| unnamed protein product [Podospora anserina S mat+]
          Length = 294

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 68/229 (29%), Gaps = 38/229 (16%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF------- 100
           +S+G   LD      G  KG + EI+GP   GKT   +   A   + GG   +       
Sbjct: 23  ISTGLPVLD---ASNGIQKGSVTEIWGPPGVGKTAFGIQLTANCLREGGGVVWSGLGSLL 79

Query: 101 -------VDAEHALDSIYARKLGV---------DLKNLLISQPDTGEQALEITDMLVRS- 143
                   D  H +      ++            L   +     T    + +      S 
Sbjct: 80  WSGTYTDADGFHRMSIERLHQVVDLNSEDGQIQPLDKFVHYSCPTLVHLIALLCRPTASC 139

Query: 144 --GAVDIIVIDSVAALTPRAEIEGDMGES--------LPGMQARLMSQALRKLTSSISRS 193
                 +IV+DS++AL     ++                  + + +   L  L    +  
Sbjct: 140 IPEWTSLIVVDSLSALVNHDVLKNTDLRQAPQTKHKDTRERRIQALHYILSNLQKLAATR 199

Query: 194 KCILVFINQMRMKIGVMFGSPETTT-GGNALKFYSSVRLDIRRVGSIKD 241
              +V + Q   K+    G+        +  +     R+ + R     D
Sbjct: 200 DVAIVILTQCATKMQAERGATLVPAINASVWRQGIVSRIALFRDRLQND 248


>gi|163841904|ref|YP_001626309.1| DNA repair protein RadA [Renibacterium salmoninarum ATCC 33209]
 gi|162955380|gb|ABY24895.1| DNA repair protein [Renibacterium salmoninarum ATCC 33209]
          Length = 460

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 54/143 (37%), Gaps = 3/143 (2%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G   LD  LG GG   G ++ + G    GK+TL L   A+  +  G   ++  E + 
Sbjct: 71  LSTGVDELDRVLG-GGVVPGAVILLAGEPGVGKSTLLLDVAAKFARENGDVLYLTGEESA 129

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
             +  R     +  +  S     E  L      V      +++IDSV   +         
Sbjct: 130 AQVKLRA--ERIGAIAESLYLAAENDLGSVLGQVEQLKPKLLLIDSVQTFSSSVVDGSAG 187

Query: 168 GESLPGMQARLMSQALRKLTSSI 190
           G +     A  +  A ++L  + 
Sbjct: 188 GVTQVREVAASIIAAAKRLNMTA 210


>gi|192361779|ref|YP_001981759.1| DNA repair protein RadA [Cellvibrio japonicus Ueda107]
 gi|190687944|gb|ACE85622.1| DNA repair protein RadA [Cellvibrio japonicus Ueda107]
          Length = 456

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 15/167 (8%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   SSG+   D  LG G  P G +V I G   +GK+TL L T+    +T  +  +V
Sbjct: 70  LQDLPRFSSGTGEFDRVLGGGFVP-GSVVLIGGNPGAGKSTLLLQTLCNLART-MSALYV 127

Query: 102 DAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +   A++LG+    L +    +     E      +     ++VIDS+  +  
Sbjct: 128 TGEESLQQVAMRAQRLGLPTDKLQMLSETSV----EAICATAQQVQPKVMVIDSIQVMHM 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
                     S     A         LT    ++  +L+ +  +   
Sbjct: 184 EDITSAPGSVSQVRESAAY-------LTRFAKQTGTVLILVGHVTKD 223


>gi|84387259|ref|ZP_00990280.1| DNA repair protein RadA [Vibrio splendidus 12B01]
 gi|84377906|gb|EAP94768.1| DNA repair protein RadA [Vibrio splendidus 12B01]
          Length = 460

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 8/146 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   SSG   LD  LG GG   G  + I G   +GK+TL L T+ Q      T  +V
Sbjct: 71  LQEVPRFSSGFKELDRVLG-GGVVPGAAILIGGNPGAGKSTLLLQTMCQLSSQLPT-LYV 128

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+  ++L +      ++  ++ +         I+VIDS+  +  
Sbjct: 129 TGEESLQQVAMRASRLGLPKEHLKMLSETNVDKICQVAEK----EQPKIMVIDSIQVMHV 184

Query: 160 RAEIEGDMGESLPGMQARLMSQALRK 185
                     +     A  +++  ++
Sbjct: 185 ADVQSSPGSVAQVRESATALTRYAKQ 210


>gi|332159189|ref|YP_004424468.1| recombinase related protein [Pyrococcus sp. NA2]
 gi|331034652|gb|AEC52464.1| recombinase related protein [Pyrococcus sp. NA2]
          Length = 236

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 21/137 (15%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF----- 100
           E +S+G  GLD  +  GG   GR+  + GP  SGKTT  +  + +  + G   A+     
Sbjct: 6   ERISTGVKGLDELI-EGGLIPGRVYLVTGPPGSGKTTFGMQFLLEGARRGEKVAYVSLIH 64

Query: 101 -----------VDAEHALDSIYARKLGVDLKNLLI---SQPDTGEQALEITDMLVRSGAV 146
                       D    +     + +  DL  +L    ++  +    L     +V    +
Sbjct: 65  DPEDVVKDMVRFDPSIYVYVNSWKLMLYDLGPILWRESTRVPSWRSVLSRIREIVEDERI 124

Query: 147 DIIVIDSVAAL-TPRAE 162
             +VID + A+  PR +
Sbjct: 125 TRLVIDPLTAIDFPRQD 141


>gi|288549365|ref|ZP_05966869.2| hypothetical protein ENTCAN_05216 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318842|gb|EFC57780.1| DNA repair protein RadA [Enterobacter cancerogenus ATCC 35316]
          Length = 416

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 12/156 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 19  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCRL 75

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 76  AEQ-MKTLYVTGEESLQQVAMRAHRLGLPTGNLNMLSETSIEQICMIAE----EEQPKLM 130

Query: 150 VIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
           VIDS+  +   A+I+   G  +     A  +++  +
Sbjct: 131 VIDSIQVMH-MADIQSSPGSVAQVRETAAYLTRFAK 165


>gi|307696998|gb|ADN85965.1| disrupted meiotic cDNA 1 protein [Leymus karelinii]
          Length = 160

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 59/172 (34%), Gaps = 19/172 (11%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEI 163
           +   +       L N++ ++  T E    +       +      ++++DSV AL      
Sbjct: 2   IAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIMDSVIALFR---- 57

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGN 221
               G      + + ++Q L +LT         +   NQ+    G       P+   GG+
Sbjct: 58  VDFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGH 117

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
            L   ++VRL +R+           G Q   K+       P  +  F I  G
Sbjct: 118 VLAHAATVRLMLRKGK---------GEQRVCKIFDAPNL-PEGEAVFQITTG 159


>gi|294495690|ref|YP_003542183.1| circadian clock protein, KaiC [Methanohalophilus mahii DSM 5219]
 gi|292666689|gb|ADE36538.1| putative circadian clock protein, KaiC [Methanohalophilus mahii DSM
           5219]
          Length = 237

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 68/188 (36%), Gaps = 13/188 (6%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+G  GLD  +G  G+P  + + I G   SGKT  A+H I Q+   G     +  E
Sbjct: 1   MERLSTGIQGLDKKIGD-GYPGKKGILITGAPGSGKTIFAMHAINQACTDGKKSVIMATE 59

Query: 105 HALDSIYARK--LGVDLKNLLISQPDTGEQALEI-------TDMLVRSGAVDIIVIDSVA 155
              + I  +           + S      + LE+          ++   ++  + I S+ 
Sbjct: 60  ETEEDITQQAKMFDFPFDKYIESGLLEVVKILEMRSRSVTKAAEMIDGLSLKEVDIISLP 119

Query: 156 ALTP---RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
            L P      +  ++G    G+  R        L   +S+     +F+            
Sbjct: 120 ELIPYDAEVIVIDNIGVFAIGLTPREFRDQFDTLNLLLSQKDVTTLFVMDEAAHQMTRGV 179

Query: 213 SPETTTGG 220
           +  +T G 
Sbjct: 180 ADYSTFGN 187


>gi|297620495|ref|YP_003708632.1| DNA repair protein RadA [Waddlia chondrophila WSU 86-1044]
 gi|297375796|gb|ADI37626.1| DNA repair protein RadA [Waddlia chondrophila WSU 86-1044]
          Length = 457

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 89/257 (34%), Gaps = 33/257 (12%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
               + +     D  +G GG   G +  I G    GK+TL L       + G    +V  
Sbjct: 67  ETPRILTKINEFDRLIG-GGVVPGSLTLIGGEPGIGKSTLMLQLSQAFAEKGLKVLYVTG 125

Query: 104 EHALDS--IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           E +++   + A++LG+   NLL+                V     D++++DS+  +  + 
Sbjct: 126 EESVEQTSLRAQRLGILSDNLLLLSETNYSH----IKAQVDQVQPDVMIVDSIQ-IVYKP 180

Query: 162 EIEGDMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
           EI    G  S                   I++   I  F+     K G +        G 
Sbjct: 181 EISSAPGSVSQVRENTNEFMH--------IAKGYGIATFLIGHVTKSGEI-------AGP 225

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280
             L+      L         DK +   N   ++VVKN+     +   F +   +G++   
Sbjct: 226 RILEHLVDTVLYFEG-----DKQN---NYRMIRVVKNRFGPTDEIAVFQMR-QDGLAQVS 276

Query: 281 ELIDLGVKASIVDKSGA 297
               L ++    + SG+
Sbjct: 277 NPSHLFLEERAKEMSGS 293


>gi|160881581|ref|YP_001560549.1| DNA repair protein RadA [Clostridium phytofermentans ISDg]
 gi|160430247|gb|ABX43810.1| DNA repair protein RadA [Clostridium phytofermentans ISDg]
          Length = 452

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 65/194 (33%), Gaps = 7/194 (3%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   LD  LG GG  KG +V + G    GK+TL L    Q         +V  E +   
Sbjct: 71  TGIGELDRVLG-GGIVKGSLVLVGGDPGIGKSTLLLQMCRQLTTAKKKVLYVSGEESQQQ 129

Query: 110 I--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           I   A +LG     LL+      +Q  +I    V     +I++IDS+  +          
Sbjct: 130 IKMRAERLGTFQGELLLLSETNLDQIEDI----VSKDTPEIMIIDSIQTMFKEEISASPG 185

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
             S        +    + +  SI     +         ++            G+    Y 
Sbjct: 186 SVSQVRESTGALMHLAKGMGISIFIVGHVTKEGVVAGPRVLEHMVDTVLYFEGDNTAAYR 245

Query: 228 SVRLDIRRVGSIKD 241
            +R    R GS  +
Sbjct: 246 ILRAVKNRFGSTNE 259


>gi|310817786|ref|YP_003950144.1| hypothetical protein STAUR_0513 [Stigmatella aurantiaca DW4/3-1]
 gi|309390858|gb|ADO68317.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 498

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           E VS+G  GLD  L  GGF K R   + G   SGKT LA          GG   ++
Sbjct: 10  ERVSTGIPGLDTVL-CGGFRKARTYMVMGLPGSGKTILANQVCFHHAAEGGRVLYI 64



 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 42/119 (35%), Gaps = 13/119 (10%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC---AFVDAEH-- 105
           G  GLD  L  GG P G    + GP  SGKT L +H +A+  + G      AF DA    
Sbjct: 250 GIPGLDTMLS-GGLPMGSTTLLLGPSGSGKTLLGIHFLAEGARRGERSHYFAFYDAPRRM 308

Query: 106 -------ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
                   LD       G    +         +Q        +R   V  I +D   AL
Sbjct: 309 LAQTASVGLDLEPFIAQGSLEVSFRAPTETILDQLGVQLLAAIRERGVRRIFLDGYDAL 367


>gi|240103053|ref|YP_002959362.1| RecA family AAA ATPase [Thermococcus gammatolerans EJ3]
 gi|239910607|gb|ACS33498.1| RecA family AAA ATPase [Thermococcus gammatolerans EJ3]
          Length = 235

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 19/137 (13%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
           G I + ++ V SG  GLD  +G G  P GR+  I GP  SGKTT+ +  + +  + G   
Sbjct: 2   GEILKSLDRVPSGVPGLDDIIGGGFLP-GRVYLITGPPGSGKTTMGVQFLVEGARNGEKG 60

Query: 99  AFV----DAEHALDSIYARKLGV------------DLKNLLISQPD--TGEQALEITDML 140
            FV    D    L  +     G+            DL  +L+      T  +       +
Sbjct: 61  VFVSLVEDPRIILQDMLRYNFGLLGYTKSKMITFHDLGRILLRAEYRLTWNELFNSILQI 120

Query: 141 VRSGAVDIIVIDSVAAL 157
           +    +   VIDS  ++
Sbjct: 121 ISEEGIKRAVIDSFTSM 137


>gi|305680575|ref|ZP_07403383.1| DNA repair protein RadA [Corynebacterium matruchotii ATCC 14266]
 gi|305660106|gb|EFM49605.1| DNA repair protein RadA [Corynebacterium matruchotii ATCC 14266]
          Length = 461

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 53/141 (37%), Gaps = 4/141 (2%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           ++G   LD  LG G  P G +V + G    GK+TL L   ++  K      +V AE +  
Sbjct: 79  TTGIGELDRVLGSGIVP-GSVVLLAGEPGVGKSTLLLEVASRWAKLDRVALYVTAEESAG 137

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +  R        L  S     E  L++    V      ++++DSV  +    ++EG  G
Sbjct: 138 QVRMRA--ERTGALHDSLYLAAESNLDVVFGHVDQLKPSLLIVDSVQTMN-ATDVEGVAG 194

Query: 169 ESLPGMQARLMSQALRKLTSS 189
                         L K T  
Sbjct: 195 GVAQSRAVTAALTTLAKTTGI 215


>gi|225022134|ref|ZP_03711326.1| hypothetical protein CORMATOL_02167 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945067|gb|EEG26276.1| hypothetical protein CORMATOL_02167 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 428

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 53/141 (37%), Gaps = 4/141 (2%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           ++G   LD  LG G  P G +V + G    GK+TL L   ++  K      +V AE +  
Sbjct: 46  TTGIGELDRVLGSGIVP-GSVVLLAGEPGVGKSTLLLEVASRWAKLDRVALYVTAEESAG 104

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +  R        L  S     E  L++    V      ++++DSV  +    ++EG  G
Sbjct: 105 QVRMRA--ERTGALHDSLYLAAESNLDVVFGHVDQLKPSLLIVDSVQTMN-ATDVEGVAG 161

Query: 169 ESLPGMQARLMSQALRKLTSS 189
                         L K T  
Sbjct: 162 GVAQSRAVTAALTTLAKTTGI 182


>gi|327356371|gb|EGE85228.1| hypothetical protein BDDG_08173 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 506

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 80/260 (30%), Gaps = 65/260 (25%)

Query: 40  SIFEGIEVVSSGSLGLDIAL-----------GIG---------------GFPKGRIVEIY 73
           S +EG   VS+G   LD AL           G G               G  +G + E+ 
Sbjct: 39  STWEGDGAVSTGLPRLDAALALPSGLRPSPLGPGRNSQRYNGHQDVPAKGIKRGEVTEVT 98

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL------------------ 115
           GP   GKT+LA+   A+  +      ++D    ++    + +                  
Sbjct: 99  GPRGVGKTSLAMGIAARVLQAAQKVIWIDTAGPMNPTRLKDICQRVRVSGLSDNSSDAAS 158

Query: 116 -----GVDLKNLLISQPDTGEQALEITDML---VRSGAVDIIVIDSVAALT--------- 158
                   L  L+   P T    L +              +IVIDS+++L          
Sbjct: 159 NGGRSDEILNELIYFHPPTLAHLLALISHPPKGFPPQETGLIVIDSISSLFTSEYRTKLP 218

Query: 159 PRAEIEGDMGESLPGMQARL---MSQALRKLTSSISRSKCILVFINQMRMKI-GVMFGSP 214
           PR         +    +      +   +  L    +R  C+++ IN+M  +  G      
Sbjct: 219 PRNSNPKHRTTAESKDERTRWKIIGNLVMDLKKLAARLNCVVIVINEMASRFRGTQPPVL 278

Query: 215 ETTTGGNALKFYSSVRLDIR 234
                G       + R+ + 
Sbjct: 279 HEALSGITWDSGVTTRIKLC 298


>gi|300724557|ref|YP_003713882.1| putative ATP-dependent protease, with nucleoside triP hydrolase and
           multiheme cytochrome domains, DNA repair protein
           [Xenorhabdus nematophila ATCC 19061]
 gi|297631099|emb|CBJ91787.1| putative ATP-dependent protease, with nucleoside triP hydrolase and
           multiheme cytochrome domains, DNA repair protein
           [Xenorhabdus nematophila ATCC 19061]
          Length = 461

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 10/146 (6%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ Q         +V
Sbjct: 70  LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTMCQLSTQ-MKTLYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+    L +    + EQ   I +         ++VIDS+  +  
Sbjct: 128 TGEESLQQVAMRAHRLGLTTDKLNMLSETSIEQICLIAE----QEQPKLMVIDSIQVMH- 182

Query: 160 RAEIEGDMGE-SLPGMQARLMSQALR 184
            A+I+   G  +     A  +++  +
Sbjct: 183 MADIQSSPGSVAQVRETAAYLTRFAK 208


>gi|207859700|ref|YP_002246351.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|206711503|emb|CAR35888.1| putative DNA repair protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 460

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 12/156 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 63  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 120 AEQ-MKALYVTGEESLQQVAMRAHRLGLPTANLNMLSETSIEQICLIAE----EEQPKLM 174

Query: 150 VIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
           VIDS+  +   A+I+   G  +     A  +++  +
Sbjct: 175 VIDSIQVMH-MADIQSSPGSVAQVRETAAYLTRFAK 209


>gi|317487404|ref|ZP_07946192.1| DNA repair protein RadA [Bilophila wadsworthia 3_1_6]
 gi|316921336|gb|EFV42634.1| DNA repair protein RadA [Bilophila wadsworthia 3_1_6]
          Length = 449

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 6/142 (4%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E   +G   LD  LG G  P G  + + G    GK+TL L        +G    +   E 
Sbjct: 69  EPFGTGLEALDRVLGRGLVP-GSALLMGGEPGIGKSTLLLQMAGAVASSGKLVLYASGEE 127

Query: 106 ALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           +L  I  R  +LG+   NLL     +  +  ++  +L   GA D++++DSV   T  +  
Sbjct: 128 SLPQIKDRANRLGMLHDNLL---ALSTSRVEDVLPLLEGDGAPDLLIVDSVQTFTSESAE 184

Query: 164 EGDMGESLPGMQARLMSQALRK 185
                 S     A  +  A ++
Sbjct: 185 GLPGNVSQVRAVATEIVDACKR 206


>gi|169627667|ref|YP_001701316.1| DNA repair protein RadA [Mycobacterium abscessus ATCC 19977]
 gi|169239634|emb|CAM60662.1| Probable DNA repair protein RadA [Mycobacterium abscessus]
          Length = 473

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 49/134 (36%), Gaps = 7/134 (5%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +G   LD  LG GG   G +  + G    GK+TL L  + Q   +GG   ++  E +  
Sbjct: 72  PTGVSELDRVLG-GGLIPGSVNLLAGEPGVGKSTLLLKVVHQWAASGGRALYISGEESAA 130

Query: 109 SI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
            +   A + G     + ++        L      + +    + +IDSV  ++        
Sbjct: 131 QVRLRAERTGCVHDEVYLASESDLHSVL----GHIEAVKPTLAIIDSVQTMSTTDADGVT 186

Query: 167 MGESLPGMQARLMS 180
            G +        ++
Sbjct: 187 GGVTQVRAVTTALT 200


>gi|164423281|ref|XP_961993.2| hypothetical protein NCU08806 [Neurospora crassa OR74A]
 gi|157070026|gb|EAA32757.2| predicted protein [Neurospora crassa OR74A]
          Length = 234

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 8/72 (11%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALG--------IGGFPKGRIVEIYGPESSGKTTLALHTI 88
              +  +    + +    LD AL          GG  KG++ EI+GP   GKT   +   
Sbjct: 33  DDLNDGDNSPFIPTSIDALDAALKPSLDIEIVTGGIQKGQVTEIWGPPGVGKTAFGIQLA 92

Query: 89  AQSQKTGGTCAF 100
           A     G    +
Sbjct: 93  ANCLSEGKGVVW 104


>gi|254230315|ref|ZP_04923703.1| hypothetical protein VEx25_B0297 [Vibrio sp. Ex25]
 gi|151937175|gb|EDN56045.1| hypothetical protein VEx25_B0297 [Vibrio sp. Ex25]
          Length = 264

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 2/103 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSG   LD  LG GGFP   +VE+    S G+  L L    ++ +T G  AF+     ++
Sbjct: 64  SSGFSELDDLLG-GGFPPHGVVEMESIGSIGELRL-LAPYLKATQTNGVTAFIQPPALVN 121

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           S++   +G+D+  + +  P   + AL   +  ++SG    +++
Sbjct: 122 SLFLHYIGLDINQVWVVNPAHPKDALWAAEQCLKSGVCSNVLL 164


>gi|262393789|ref|YP_003285643.1| RecA/RadA recombinase [Vibrio sp. Ex25]
 gi|262337383|gb|ACY51178.1| RecA/RadA recombinase [Vibrio sp. Ex25]
          Length = 230

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 2/103 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSG   LD  LG GGFP   +VE+    S G+  L L    ++ +T G  AF+     ++
Sbjct: 30  SSGFSELDDLLG-GGFPPHGVVEMESIGSIGELRL-LAPYLKATQTNGVTAFIQPPALVN 87

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           S++   +G+D+  + +  P   + AL   +  ++SG    +++
Sbjct: 88  SLFLHYIGLDINQVWVVNPAHPKDALWAAEQCLKSGVCSNVLL 130


>gi|218248940|ref|YP_002374311.1| circadian clock protein KaiC [Cyanothece sp. PCC 8801]
 gi|257062026|ref|YP_003139914.1| circadian clock protein KaiC [Cyanothece sp. PCC 8802]
 gi|54036147|sp|Q8VL13|KAIC_SYNP8 RecName: Full=Circadian clock protein kinase kaiC
 gi|17046498|gb|AAL34546.1|AF442204_2 KaiC [Cyanothece sp. PCC 8801]
 gi|218169418|gb|ACK68155.1| putative circadian clock protein, KaiC [Cyanothece sp. PCC 8801]
 gi|256592192|gb|ACV03079.1| putative circadian clock protein, KaiC [Cyanothece sp. PCC 8802]
          Length = 521

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 72/219 (32%), Gaps = 33/219 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       +SSG   LD   G GGF K  I+   G   +GKT L    + +  
Sbjct: 253 MRLTQRSSNA----RISSGVKTLDEMCG-GGFFKDSIILATGATGTGKTLLVSKFLEEGC 307

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
           + G        E +   +        +            LL S P++   E  L+I    
Sbjct: 308 RQGERAILFAYEESRAQLSRNAFSWGIDFEEMERKGLLKLLCSYPESAGLEDHLQIIKSE 367

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 368 ISEFKPSRIAIDSLSALA-------------RGVTNNAFRQFVIGVTGYAKQEEITGFFT 414

Query: 201 N---QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           N   Q      +      T T    +  Y  +R ++ R 
Sbjct: 415 NTTDQFMGAHSITESHISTITDTIIMLQYVEIRGEMSRA 453



 Score = 37.1 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ----SQKT 94
            +  +G+  + +   G D  +  GG P GR   + G   +GKT LA+  +          
Sbjct: 13  ENTTQGVRKIRTMIEGFDE-ITHGGLPIGRTTLVSGTSGTGKTLLAVQFLYHGIKYFDYP 71

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           G    F ++   +    A   G DL+ ++  
Sbjct: 72  GLFVTFEESPTDIIQN-AYSFGWDLQEIVDE 101


>gi|269966537|ref|ZP_06180620.1| hypothetical protein VMC_20500 [Vibrio alginolyticus 40B]
 gi|269828881|gb|EEZ83132.1| hypothetical protein VMC_20500 [Vibrio alginolyticus 40B]
          Length = 264

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 2/103 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSG   LD  LG GGFP   +VE+    S G+  L L    ++ +T G  AF+     ++
Sbjct: 64  SSGFSELDDLLG-GGFPPHGVVEMESIGSIGELRL-LAPYLKATQTNGVTAFIQPPALVN 121

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           S++   +G+D+  + +  P   + AL   +  ++SG    +++
Sbjct: 122 SLFLHYIGLDINQVWVVTPTHPKDALWAAEQCLKSGVCSNVLL 164


>gi|269137898|ref|YP_003294598.1| DNA repair protein RadA [Edwardsiella tarda EIB202]
 gi|267983558|gb|ACY83387.1| DNA repair protein RadA [Edwardsiella tarda EIB202]
 gi|304557950|gb|ADM40614.1| DNA repair protein RadA [Edwardsiella tarda FL6-60]
          Length = 462

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 69/159 (43%), Gaps = 11/159 (6%)

Query: 30  GAIMQLGSQGSI-FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           G++ ++     I  E +   S+G    D  LG GG   G  + I G   +GK+TL L T+
Sbjct: 59  GSLSKVQKLSEISLEALPRFSTGFTEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTL 117

Query: 89  AQSQKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            +  +      +V  E +L  +  R  +LG+  + L +    + EQ   I +        
Sbjct: 118 CRLSQQ-MKTLYVTGEESLQQVAMRAHRLGLPTEGLNMLSETSIEQICLIAE----QEQP 172

Query: 147 DIIVIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
            ++VIDS+  +   A+I+   G  +     A  +++  +
Sbjct: 173 KLMVIDSIQVMH-MADIQSSPGSVAQVRETAAYLTRFAK 210


>gi|238918567|ref|YP_002932081.1| DNA repair protein RadA [Edwardsiella ictaluri 93-146]
 gi|238868135|gb|ACR67846.1| DNA repair protein RadA, putative [Edwardsiella ictaluri 93-146]
          Length = 462

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 69/159 (43%), Gaps = 11/159 (6%)

Query: 30  GAIMQLGSQGSI-FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           G++ ++     I  E +   S+G    D  LG GG   G  + I G   +GK+TL L T+
Sbjct: 59  GSLSKVQKLSEISLEALPRFSTGFTEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTL 117

Query: 89  AQSQKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            +  +      +V  E +L  +  R  +LG+  + L +    + EQ   I +        
Sbjct: 118 CRLSQQ-MKTLYVTGEESLQQVAMRAHRLGLPTEGLNMLSETSIEQICLIAE----QEQP 172

Query: 147 DIIVIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
            ++VIDS+  +   A+I+   G  +     A  +++  +
Sbjct: 173 KLMVIDSIQVMH-MADIQSSPGSVAQVRETAAYLTRFAK 210


>gi|296101167|ref|YP_003611313.1| hypothetical protein ECL_00800 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055626|gb|ADF60364.1| hypothetical protein ECL_00800 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 461

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 10/146 (6%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ +  +      +V
Sbjct: 72  LEALPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKLAEQ-MKTLYV 129

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+   NL +    + EQ   I +         ++VIDS+  +  
Sbjct: 130 TGEESLQQVAMRAHRLGLPTGNLNMLSETSIEQICMIAE----EEQPKLMVIDSIQVMH- 184

Query: 160 RAEIEGDMGE-SLPGMQARLMSQALR 184
            A+I+   G  +     A  +++  +
Sbjct: 185 MADIQSSPGSVAQVRETAAYLTRFAK 210


>gi|315499691|ref|YP_004088494.1| DNA repair protein rada [Asticcacaulis excentricus CB 48]
 gi|315417703|gb|ADU14343.1| DNA repair protein RadA [Asticcacaulis excentricus CB 48]
          Length = 457

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 55/143 (38%), Gaps = 3/143 (2%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E  + + +G    D   G GG   G  + + G    GK+TL L   A +   G   A++ 
Sbjct: 70  EAPQRMVTGIEEFDRVCG-GGIVPGSAILLAGDPGVGKSTLLLQVTAHAALRGLKVAYIS 128

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E A++ +  R   + +    +      E +L      ++    D+++IDS+  L   A 
Sbjct: 129 GEEAVEQVRGRASRMGVSKARVDLAA--ETSLRTILDALKRDTYDLVIIDSIQTLWSDAI 186

Query: 163 IEGDMGESLPGMQARLMSQALRK 185
                  S     A  + +  +K
Sbjct: 187 DAAQGSVSQVRACAGELVRLAKK 209


>gi|224076223|ref|XP_002195631.1| PREDICTED: RAD51-like 3 (S. cerevisiae) [Taeniopygia guttata]
          Length = 431

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 70/214 (32%), Gaps = 31/214 (14%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL-----------HT 87
             +     ++ +GS  LD  L   G   G + E+ G   +GKT L L             
Sbjct: 73  EELKSSTAILPTGSPSLDQLL-DSGLYTGEVTELMGAPGTGKTQLCLGIAASVSLGLKQH 131

Query: 88  IAQSQKTGGTCAF----------VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           +     TGG  A            D E  L+++   ++        + +     +     
Sbjct: 132 VLFLDSTGGFTASRLYQMLQAQTEDEEEQLEALQRVRVERVFNIYEVLRALQELRDRLSQ 191

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
            ++   G + ++V+DSV+A+         +          LM Q  R+L +        +
Sbjct: 192 QVVSSMGPLKVVVLDSVSAVIY------PLLGGRQSEGLALMMQLSRELKTLAREFSLAV 245

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
           V  NQ+                G +  F  S R+
Sbjct: 246 VVTNQVTRDSST---GTLKPALGRSWSFVPSTRV 276


>gi|226946142|ref|YP_002801215.1| DNA repair protein RadA [Azotobacter vinelandii DJ]
 gi|226721069|gb|ACO80240.1| DNA repair protein RadA [Azotobacter vinelandii DJ]
          Length = 453

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 53/144 (36%), Gaps = 4/144 (2%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E +   S+ S  LD  LG GG   G +V I G    GK+T+ L T+    +      +V
Sbjct: 65  VEELPRFSTASKELDRVLG-GGLVDGSVVLIGGDPGIGKSTILLQTLCNVAERFP-ALYV 122

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
             E +   +  R     L   L       E  +E      R     ++VIDS+  +    
Sbjct: 123 TGEESQQQVAMRA--RRLDLPLDRLKVMTETCIEAIVATARLEKPKVMVIDSIQTIFTEQ 180

Query: 162 EIEGDMGESLPGMQARLMSQALRK 185
                 G +     A L+ +  ++
Sbjct: 181 LQSAPGGVAQVRESAALLVRFAKQ 204


>gi|182415863|ref|YP_001820929.1| hypothetical protein Oter_4055 [Opitutus terrae PB90-1]
 gi|177843077|gb|ACB77329.1| hypothetical protein Oter_4055 [Opitutus terrae PB90-1]
          Length = 214

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 7/128 (5%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI-YGPESSGKTTLALHTIAQSQKTGGTC 98
           +       + +G   +D   G+GG P G + EI     S G   L    +  ++   G  
Sbjct: 22  AARGDTRTLPTGVPAIDD--GVGGLPCGAVTEIVCAAPSCGSQLLLGELLRVTRHERGRV 79

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           A VD   + D       G  L++L+  +      AL   D+L R   + ++VID    L 
Sbjct: 80  ALVDGHDSFDPASWP--GEWLQHLVWVRCCDTAMALHAADILTRDANLQLVVIDLR--LA 135

Query: 159 PRAEIEGD 166
           P AE++  
Sbjct: 136 PLAELKRT 143


>gi|219848271|ref|YP_002462704.1| circadian clock protein KaiC [Chloroflexus aggregans DSM 9485]
 gi|219542530|gb|ACL24268.1| putative circadian clock protein, KaiC [Chloroflexus aggregans DSM
           9485]
          Length = 565

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
             E +SSG   LD  L  G + +G  + I GP  SGKT+L    +  +   G        
Sbjct: 245 STEHISSGFPDLDSLLDGGSYYRGSTILISGPTGSGKTSLGALFLNAACARGEPAILFGF 304

Query: 104 EHALDSIY--ARKLGVDLKNLLI 124
           E + D I    R +GVDL     
Sbjct: 305 EESADQIMRNMRSIGVDLHQWYE 327



 Score = 42.9 bits (99), Expect = 0.071,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 41 IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
          I   I    +G  G D   G GG P+GR   I G    GKT  A  T+      
Sbjct: 2  IVAHIPKAPTGIRGFDEITG-GGVPRGRPTLICGGPGCGKTLFAFETLVHGAAQ 54


>gi|186503833|ref|NP_001118403.1| RAD51B; recombinase [Arabidopsis thaliana]
 gi|330253048|gb|AEC08142.1| DNA repair protein RAD51-like 2 [Arabidopsis thaliana]
          Length = 338

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 65/183 (35%), Gaps = 32/183 (17%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCAFV 101
           + +   GLD  L  GG P G + E+ GP   GK+   +                G   ++
Sbjct: 52  LPTHLKGLDDTL-CGGIPFGVLTELVGPPGIGKSQFCMKLALSASFPVAYGGLDGRVIYI 110

Query: 102 DAEHALDSIYARKLGVD---------------LKNLLISQPD---TGEQALEITDMLVRS 143
           D E    S    ++G++                  +L+ +P       ++++     +  
Sbjct: 111 DVESKFSSRRVIEMGLESFPEVFHLKGMAQEMAGRILVLRPTSLANFTESIQELKNSILQ 170

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             V ++VIDS+ AL       G         +   +   +  L S    S+  +V  NQ+
Sbjct: 171 NQVKLLVIDSMTALLSGENKPG-------AQRQPQLGWHISFLKSLAEFSRIPIVVTNQV 223

Query: 204 RMK 206
           R +
Sbjct: 224 RSQ 226


>gi|238479387|ref|NP_001154538.1| RAD51B; recombinase [Arabidopsis thaliana]
 gi|58430740|dbj|BAD89164.1| AtRAD51Bbeta [Arabidopsis thaliana]
 gi|330253049|gb|AEC08143.1| DNA repair protein RAD51-like 2 [Arabidopsis thaliana]
          Length = 243

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 65/183 (35%), Gaps = 32/183 (17%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCAFV 101
           + +   GLD  L  GG P G + E+ GP   GK+   +                G   ++
Sbjct: 52  LPTHLKGLDDTL-CGGIPFGVLTELVGPPGIGKSQFCMKLALSASFPVAYGGLDGRVIYI 110

Query: 102 DAEHALDSIYARKLGVD---------------LKNLLISQPD---TGEQALEITDMLVRS 143
           D E    S    ++G++                  +L+ +P       ++++     +  
Sbjct: 111 DVESKFSSRRVIEMGLESFPEVFHLKGMAQEMAGRILVLRPTSLANFTESIQELKNSILQ 170

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             V ++VIDS+ AL       G         +   +   +  L S    S+  +V  NQ+
Sbjct: 171 NQVKLLVIDSMTALLSGENKPG-------AQRQPQLGWHISFLKSLAEFSRIPIVVTNQV 223

Query: 204 RMK 206
           R +
Sbjct: 224 RSQ 226


>gi|57283105|emb|CAD70704.1| putative DNA recombination protein [Arabidopsis thaliana]
          Length = 371

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 65/183 (35%), Gaps = 32/183 (17%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCAFV 101
           + +   GLD  L  GG P G + E+ GP   GK+   +                G   ++
Sbjct: 84  LPTHLKGLDDTL-CGGIPFGVLTELVGPPGIGKSQFCMKLALSASFPVAYGGLDGRVIYI 142

Query: 102 DAEHALDSIYARKLGVD---------------LKNLLISQPD---TGEQALEITDMLVRS 143
           D E    S    ++G++                  +L+ +P       ++++     +  
Sbjct: 143 DVESKFSSRRVIEMGLESFPEVFHLKGMAQEMAGRILVLRPTSLANFTESIQELKNSILQ 202

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             V ++VIDS+ AL       G         +   +   +  L S    S+  +V  NQ+
Sbjct: 203 NQVKLLVIDSMTALLSGENKPG-------AQRQPQLGWHISFLKSLAEFSRIPIVVTNQV 255

Query: 204 RMK 206
           R +
Sbjct: 256 RSQ 258


>gi|319794259|ref|YP_004155899.1| circadian clock protein, kaic [Variovorax paradoxus EPS]
 gi|315596722|gb|ADU37788.1| putative circadian clock protein, KaiC [Variovorax paradoxus EPS]
          Length = 500

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 3/92 (3%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
            S+ +    +  + SG   LD  LG GG  KG      G   +GK+++A+     + + G
Sbjct: 245 ASEHATSGPLVKMPSGIAELDDLLG-GGLEKGTSTLFVGAPGTGKSSVAVQFAVSAARRG 303

Query: 96  GTCAFVDAEHALD--SIYARKLGVDLKNLLIS 125
              A    + +++        LG+DL+  + S
Sbjct: 304 ECAALFIFDESVNTLRTRCAGLGMDLEPYIAS 335



 Score = 42.9 bits (99), Expect = 0.079,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 8/104 (7%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG + +   GI     G  GLD  LG GG    R+  + G   +GKTT+AL  + +  +
Sbjct: 7   RLGGRKNGLLGI-----GVPGLDDVLG-GGIEPNRLYLVEGTPGAGKTTIALQFLLEGAR 60

Query: 94  TGGTCAFVDAEHALDSIYARKL--GVDLKNLLISQPDTGEQALE 135
            G +  +V        +       G DL  + + +    + +L 
Sbjct: 61  AGESVLYVTLSETEQELRGVANSHGWDLSGIHVREMLPAQDSLH 104


>gi|157368912|ref|YP_001476901.1| DNA repair protein RadA [Serratia proteamaculans 568]
 gi|157320676|gb|ABV39773.1| DNA repair protein RadA [Serratia proteamaculans 568]
          Length = 461

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       + +   S+G L  D  LG GG   G  + I G   +GK+TL L  + + 
Sbjct: 63  VQKLSDIS--LDELPRFSTGFLEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQVLCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+    L +    + EQ   I +         ++
Sbjct: 120 SEQ-MKTLYVTGEESLQQVAMRAHRLGLPTGGLNMLSETSIEQICLIAE----QEQPKLM 174

Query: 150 VIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
           VIDS+  +   A+I+   G  +     A  +++  +
Sbjct: 175 VIDSIQVMH-MADIQSSPGSVAQVRETAAYLTRFAK 209


>gi|323495082|ref|ZP_08100170.1| DNA repair protein RadA [Vibrio brasiliensis LMG 20546]
 gi|323310669|gb|EGA63845.1| DNA repair protein RadA [Vibrio brasiliensis LMG 20546]
          Length = 459

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 16/170 (9%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   +SG   LD  LG GG   G  + I G   +GK+TL L T+           +V
Sbjct: 70  LQEVPRFTSGFKELDRVLG-GGVVPGAAILIGGNPGAGKSTLLLQTMCYLASQ-MPTLYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+   NL +      ++  ++ +         I+VIDS+  +  
Sbjct: 128 TGEESLQQVAMRASRLGLPKDNLKMLSETNVDRICQVAE----QEQPRIMVIDSIQVMHV 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
                     +     A  +++          +   + VFI     K G 
Sbjct: 184 SDVQSSPGSVAQVRESATALTRYA--------KQNNVAVFIVGHVTKDGT 225


>gi|261868436|ref|YP_003256358.1| DNA repair protein RadA [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261413768|gb|ACX83139.1| DNA repair protein RadA [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 457

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +     SSG   LD  LG GG   G  + I G   +GK+TL L  +    +   T  +V
Sbjct: 68  LQETPRFSSGFFELDRVLG-GGVVPGSAILIGGHPGAGKSTLLLQVMCNLSQK-MTALYV 125

Query: 102 DAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +   A++LG+  + L +    + EQ   + D L       IIVIDS+  +  
Sbjct: 126 TGEESLQQVAMRAKRLGLPPEKLNMLSETSVEQICNLADQLKPQ----IIVIDSIQVMQL 181

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     +     A  +++  +    +I  
Sbjct: 182 ADIQSSPGSVAQVRECASFLTRYAKTRQVAIVM 214


>gi|89093491|ref|ZP_01166439.1| DNA repair protein RadA [Oceanospirillum sp. MED92]
 gi|89082181|gb|EAR61405.1| DNA repair protein RadA [Oceanospirillum sp. MED92]
          Length = 459

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 64/160 (40%), Gaps = 10/160 (6%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GK  I+ L       E +   SSG+  LD  LG GG   G  V + G   +GK+TL L T
Sbjct: 61  GKQNIVNLSEVA--LEEMPRFSSGAGELDRVLG-GGLVPGSAVLMGGHPGAGKSTLLLQT 117

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
           +    +      +V  E +L  +  R  +LG+    L +    + E+  +    +     
Sbjct: 118 MCYLAEQ-MPALYVTGEESLQQVAMRANRLGLPTGQLKMLSETSVEKICDTAQQIQPK-- 174

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
             ++VIDS+  +            S     A  +++  ++
Sbjct: 175 --VMVIDSIQVMHMADVQSAPGSVSQVRESAAYLTRYAKQ 212


>gi|300115383|ref|YP_003761958.1| DNA repair protein RadA [Nitrosococcus watsonii C-113]
 gi|299541320|gb|ADJ29637.1| DNA repair protein RadA [Nitrosococcus watsonii C-113]
          Length = 456

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 62/161 (38%), Gaps = 15/161 (9%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGTCAFVDAEH 105
            +S+G   LD  LG GG   G +V I G    GK+TL L  +A       G   ++  E 
Sbjct: 71  RLSTGLSELDRVLG-GGLVTGSVVLIGGAPGIGKSTLLLQALANMGALQEGKVLYLTGEE 129

Query: 106 ALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           +L  I   A++LG+    + +      E+AL +     R     ++V+DS+  L      
Sbjct: 130 SLAQISLRAQRLGLGTAPVRLLADTLVERALAVA----RQERPQVMVVDSIQTLYTEQLQ 185

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
                 +     A        +L     +S   ++ +  + 
Sbjct: 186 SAPGTVTQVRESA-------GQLLRFAKQSGTGVILVGHVT 219


>gi|218692777|ref|YP_002400989.1| DNA repair protein RadA [Escherichia coli ED1a]
 gi|218430341|emb|CAR11211.1| repair protein radA homolog [Escherichia coli ED1a]
          Length = 460

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 10/155 (6%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 63  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 120 AQQ-MKTLYVTGEESLQQVAMRAHRLGLPTNNLNMLSETSIEQICLIAE----EEQPKLM 174

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           VIDS+  +            +     A  +++  +
Sbjct: 175 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAK 209


>gi|254167257|ref|ZP_04874109.1| KaiC domain protein [Aciduliprofundum boonei T469]
 gi|197623520|gb|EDY36083.1| KaiC domain protein [Aciduliprofundum boonei T469]
          Length = 227

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 57/161 (35%), Gaps = 14/161 (8%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE-- 104
            + +G  GLD  L  GG PKG  V + G   +GKTT A+  I +    G  C F+  E  
Sbjct: 2   RIKTGIEGLDDMLN-GGIPKGHTVAVIGAFGTGKTTFAMQFIWEGLINGERCIFLSLEED 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
                  A K G D    L SQ    +   E     V     D      +  L    E  
Sbjct: 61  EDSVVESASKFGWDYSKYLGSQLQLLKLDPEDAKSSVERLESD------IPELIKEFEAT 114

Query: 165 GDMGESLPGMQARLMS-----QALRKLTSSISRSKCILVFI 200
               +S+  +     S     + + KL  SI  S    VF 
Sbjct: 115 RIAVDSISLITMMYNSIDEKRKVVFKLAKSIKESGATAVFT 155


>gi|317494002|ref|ZP_07952418.1| DNA repair protein RadA [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917775|gb|EFV39118.1| DNA repair protein RadA [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 460

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 10/146 (6%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ +  +      +V
Sbjct: 71  LEALPRFSTGFAEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKLSQQ-MKTLYV 128

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+    L +    + EQ   I +         ++VIDS+  +  
Sbjct: 129 TGEESLQQVAMRAHRLGLPTDGLNMLSETSIEQICLIAE----QEQPKLMVIDSIQVMH- 183

Query: 160 RAEIEGDMGE-SLPGMQARLMSQALR 184
            A+I+   G  +     A  +++  +
Sbjct: 184 MADIQSSPGSVAQVRETAAYLTRFAK 209


>gi|226327288|ref|ZP_03802806.1| hypothetical protein PROPEN_01155 [Proteus penneri ATCC 35198]
 gi|225204506|gb|EEG86860.1| hypothetical protein PROPEN_01155 [Proteus penneri ATCC 35198]
          Length = 271

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 69/182 (37%), Gaps = 19/182 (10%)

Query: 29  KGA--IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           KGA  + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L 
Sbjct: 58  KGASRVQKLSEIS--LEALPRFSTGFKEFDRVLG-GGVVPGSAILIGGSPGAGKSTLLLQ 114

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           T+ +         +V  E +L  +  R  +LG+    L +    + EQ   I        
Sbjct: 115 TMCRLATE-MKTLYVTGEESLQQVAMRAHRLGLPTAELNMLSETSIEQICLIA----SQE 169

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              ++VIDS+  +   A+I+   G          + +    LT     +   ++ +  + 
Sbjct: 170 KPKLMVIDSIQVMH-MADIQSSPG------SVAQVRETAAYLTRFAKTNDVAIIMVGHVT 222

Query: 205 MK 206
             
Sbjct: 223 KD 224


>gi|79565337|ref|NP_180423.3| RAD51B; recombinase [Arabidopsis thaliana]
 gi|330253046|gb|AEC08140.1| DNA repair protein RAD51-like 2 [Arabidopsis thaliana]
          Length = 371

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 65/183 (35%), Gaps = 32/183 (17%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCAFV 101
           + +   GLD  L  GG P G + E+ GP   GK+   +                G   ++
Sbjct: 84  LPTHLKGLDDTL-CGGIPFGVLTELVGPPGIGKSQFCMKLALSASFPVAYGGLDGRVIYI 142

Query: 102 DAEHALDSIYARKLGVD---------------LKNLLISQPD---TGEQALEITDMLVRS 143
           D E    S    ++G++                  +L+ +P       ++++     +  
Sbjct: 143 DVESKFSSRRVIEMGLESFPEVFHLKGMAQEMAGRILVLRPTSLANFTESIQELKNSILQ 202

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             V ++VIDS+ AL       G         +   +   +  L S    S+  +V  NQ+
Sbjct: 203 NQVKLLVIDSMTALLSGENKPG-------AQRQPQLGWHISFLKSLAEFSRIPIVVTNQV 255

Query: 204 RMK 206
           R +
Sbjct: 256 RSQ 258


>gi|289642342|ref|ZP_06474490.1| DNA repair protein RadA [Frankia symbiont of Datisca glomerata]
 gi|289507874|gb|EFD28825.1| DNA repair protein RadA [Frankia symbiont of Datisca glomerata]
          Length = 401

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 53/139 (38%), Gaps = 5/139 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +G   LD  LG G  P G +V + G    GK+TL L   A+S  +G     V  E +  
Sbjct: 13  PTGVTELDRVLGGGFVP-GAVVLLAGEPGVGKSTLLLEVAARSATSGARALVVTGEESAA 71

Query: 109 SIYARK-LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
            +  R      +   L    +T    LE     V      ++V+DS+  +T  A      
Sbjct: 72  QVRLRAGRTGAVHPELWIAAETD---LEALLTHVDEVRPKLLVVDSIQTITTAAAEGAAG 128

Query: 168 GESLPGMQARLMSQALRKL 186
           G +        + +A + L
Sbjct: 129 GVTQVREVTAALIRAAKAL 147


>gi|284161689|ref|YP_003400312.1| circadian clock protein, KaiC [Archaeoglobus profundus DSM 5631]
 gi|284011686|gb|ADB57639.1| putative circadian clock protein, KaiC [Archaeoglobus profundus DSM
           5631]
          Length = 236

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + +G  GLD+ L  GG  KGR   I G   +GKT L++H + +  K G    ++  E 
Sbjct: 9   EKIPTGVEGLDVML-KGGLIKGRTYLIKGGPGTGKTILSMHFLVEGAKRGENVVYITLEE 67

Query: 106 ALD--SIYARKLGVDLKNLLISQ 126
             +        LG DL N+ I  
Sbjct: 68  PENEVRENMETLGFDLSNVTIVD 90


>gi|261333354|emb|CBH16349.1| DNA repair protein, putative [Trypanosoma brucei gambiense
          DAL972]
          Length = 379

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%)

Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
          V S+GS  LD  L  GG   G ++E++GP S GK+ L    I+     G  
Sbjct: 32 VFSTGSEELDRLLPDGGMTCGTVLEVFGPPSGGKSRLVRRMISSFAAQGAL 82


>gi|253702679|ref|YP_003023868.1| DNA repair protein RadA [Geobacter sp. M21]
 gi|251777529|gb|ACT20110.1| DNA repair protein RadA [Geobacter sp. M21]
          Length = 452

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 8/137 (5%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
              SSGS   D  LG G  P G ++ I G   +GK+T+ L T+  +  +     +V  E 
Sbjct: 70  SRFSSGSGEFDRVLGGGFVP-GSVILIGGDPGAGKSTILLQTMCHAAAS-KEVLYVSGEE 127

Query: 106 ALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           +L  I   AR+L + L  + +    + EQ LE           +++VIDS+  +      
Sbjct: 128 SLQQIAGRARRLQLPLDRVKMLAESSVEQVLEAAKA----ERPEVVVIDSIQVMQSATLE 183

Query: 164 EGDMGESLPGMQARLMS 180
               G S     A  ++
Sbjct: 184 AAPGGVSQVRECAAALT 200


>gi|74027055|gb|AAZ94621.1| Rad51 [Trypanosoma cruzi]
          Length = 371

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 91/257 (35%), Gaps = 29/257 (11%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------K 93
              + I +V++GS  +D  LG G    G I E+ G   +GKT L        Q       
Sbjct: 125 EARKEIIMVTTGSREVDKLLGGG-IETGGITELLGEFRTGKTQLCHTLCVTCQLPISQGG 183

Query: 94  TGGTCAFVDAEHALDSIY----ARKLGVDLKNLLISQP-------DTGEQALEITDMLVR 142
             G   ++D E           A +  +D +++L +         D  +Q L     ++ 
Sbjct: 184 AEGMALYIDTEGTFRPERLVAVAERYKLDPQDVLSNVACARAFNTDHQQQLLLQASAMMA 243

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                II++DS  AL  R +  G    +   M      ++L  L      +  +   +  
Sbjct: 244 ENRFAIIIVDSATALY-RTDYSGRNELAARQMHLGKFLRSLHNLAEEYGVAVVVTNQVVA 302

Query: 203 MRMKIGVMFGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
                  MF +  +   GG+ +   S+ RL +R+           G Q  +KV  +   +
Sbjct: 303 NVDGSAQMFQADAKKPIGGHIMAHASTTRLSLRKGR---------GEQRIMKVYDSPCLA 353

Query: 262 PFKQVEFDIMYGEGISF 278
             + +      G G + 
Sbjct: 354 EAEAIFGIYEDGVGDAR 370


>gi|71748706|ref|XP_823408.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70833076|gb|EAN78580.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 379

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%)

Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
          V S+GS  LD  L  GG   G ++E++GP S GK+ L    I+     G  
Sbjct: 32 VFSTGSEELDRLLPDGGMTCGTVLEVFGPPSGGKSRLVRRMISSFAAQGAL 82


>gi|92115147|ref|YP_575075.1| putative circadian clock protein, KaiC [Chromohalobacter salexigens
           DSM 3043]
 gi|91798237|gb|ABE60376.1| putative circadian clock protein, KaiC [Chromohalobacter salexigens
           DSM 3043]
          Length = 483

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 61/175 (34%), Gaps = 12/175 (6%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +  G   LD  L  GG  +G +  I GP   GKT+L L  + ++ + G        E 
Sbjct: 239 EELPCGIGELDR-LSGGGITRGTVTIISGPTGVGKTSLGLQYMHEAARRGERSVVYTFEE 297

Query: 106 ALD--SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI---DSVAALTPR 160
           ++         +G+ + +++       + +L I ++     + D         V     R
Sbjct: 298 SIGTLRTRCEAIGIPVSDMMA------KGSLSIDEVEPLHYSPDEFAWRVRTEVEQQGAR 351

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
             +   +      ++   ++     L   +S     ++ +N+     G      E
Sbjct: 352 MVMLDSLAGFRQSVRGDDITAHAHALCHYLSNMGVTVLLVNEQSAIAGEELRPSE 406


>gi|41406571|ref|NP_959407.1| DNA repair protein RadA [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41394920|gb|AAS02790.1| RadA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 474

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 7/127 (5%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G +  + G    GK+TL L    +  ++G    ++  E +  
Sbjct: 70  STGVDELDRVLG-GGVVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRALYISGEESAG 128

Query: 109 SIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
            I  R  ++G     + ++        LE     + +    ++++DSV  ++        
Sbjct: 129 QIRLRADRIGCGGDQVYLAAESDLHTVLE----HIATVKPALVIVDSVQTMSTTEADGVA 184

Query: 167 MGESLPG 173
            G +   
Sbjct: 185 GGVTQVR 191


>gi|220911139|ref|YP_002486448.1| DNA repair protein RadA [Arthrobacter chlorophenolicus A6]
 gi|219858017|gb|ACL38359.1| DNA repair protein RadA [Arthrobacter chlorophenolicus A6]
          Length = 457

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 3/132 (2%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +G   LD  LG GG   G ++ + G    GK+TL L   A+  +T     +V  E + 
Sbjct: 73  LPTGVAELDRVLG-GGLVPGAVILLAGEPGVGKSTLLLDVAAKFARTAQDVLYVTGEESA 131

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
             +  R     +  +  S   + E  L      V      ++++DSV  L+         
Sbjct: 132 AQVKLRA--ERIDAVAESLYLSAETDLGQALGQVEKIEPRLLIVDSVQTLSSADVDGSAG 189

Query: 168 GESLPGMQARLM 179
           G S     A  +
Sbjct: 190 GVSQVREVAASI 201


>gi|118465491|ref|YP_879848.1| DNA repair protein RadA [Mycobacterium avium 104]
 gi|254773526|ref|ZP_05215042.1| DNA repair protein RadA [Mycobacterium avium subsp. avium ATCC
           25291]
 gi|118166778|gb|ABK67675.1| DNA repair protein RadA [Mycobacterium avium 104]
          Length = 459

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 7/127 (5%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G +  + G    GK+TL L    +  ++G    ++  E +  
Sbjct: 55  STGVDELDRVLG-GGVVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRALYISGEESAG 113

Query: 109 SIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
            I  R  ++G     + ++        LE     V +    ++++DSV  ++        
Sbjct: 114 QIRLRADRIGCGGDQVYLAAESDLHTVLE----HVATVKPALVIVDSVQTMSTTEADGVA 169

Query: 167 MGESLPG 173
            G +   
Sbjct: 170 GGVTQVR 176


>gi|86147484|ref|ZP_01065796.1| DNA repair protein RadA [Vibrio sp. MED222]
 gi|218710419|ref|YP_002418040.1| DNA repair protein RadA [Vibrio splendidus LGP32]
 gi|85834777|gb|EAQ52923.1| DNA repair protein RadA [Vibrio sp. MED222]
 gi|218323438|emb|CAV19615.1| Predicted ATP-dependent serine protease [Vibrio splendidus LGP32]
          Length = 459

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 8/146 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   SSG   LD  LG GG   G  + I G   +GK+TL L T+ Q      T  +V
Sbjct: 70  LQEVPRFSSGFKELDRVLG-GGVVPGAAILIGGNPGAGKSTLLLQTMCQLSSQLPT-LYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+  ++L +      ++  ++ +         I+VIDS+  +  
Sbjct: 128 TGEESLQQVAMRASRLGLPKEHLKMLSETNVDKICQVAE----REQPKIMVIDSIQVMHV 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRK 185
                     +     A  +++  ++
Sbjct: 184 ADVQSSPGSVAQVRESATALTRYAKQ 209


>gi|327401533|ref|YP_004342372.1| putative circadian clock protein KaiC [Archaeoglobus veneficus
           SNP6]
 gi|327317041|gb|AEA47657.1| putative circadian clock protein, KaiC [Archaeoglobus veneficus
           SNP6]
          Length = 241

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV-- 101
            IE V +G  GLD  +G GG PKG  V ++G   SGKT+ A+       + G +C FV  
Sbjct: 2   EIERVGTGVPGLDTFMG-GGIPKGIDVVVHGDPGSGKTSFAIQFAKNGLENGESCIFVEL 60

Query: 102 DAEHALDSIYARKLGVDLKNLLI 124
           D            LG+D +    
Sbjct: 61  DILPGELRKKMHMLGLDAEKYEE 83


>gi|149447160|ref|XP_001520097.1| PREDICTED: similar to rad51, partial [Ornithorhynchus anatinus]
          Length = 211

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 47/142 (33%), Gaps = 18/142 (12%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIY----A 112
           G   G I E++G   +GKT +        Q         G   ++D E           A
Sbjct: 1   GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVA 60

Query: 113 RKLGVDLKNLLISQPD-------TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
            + G+   ++L +             Q L     ++      ++++DS  AL  R +  G
Sbjct: 61  ERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMVESRYALLIVDSATALY-RTDYSG 119

Query: 166 DMGESLPGMQARLMSQALRKLT 187
               S   M      + L +L 
Sbjct: 120 RGELSARQMHLARFLRMLLRLA 141


>gi|289207608|ref|YP_003459674.1| DNA repair protein RadA [Thioalkalivibrio sp. K90mix]
 gi|288943239|gb|ADC70938.1| DNA repair protein RadA [Thioalkalivibrio sp. K90mix]
          Length = 448

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 62/156 (39%), Gaps = 11/156 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           I +LG   +    +    +G   LD ALG GG   G +V + G    GK+TL L T+A  
Sbjct: 55  ITRLGEVEA--GEVPRTGTGLSELDRALG-GGLVHGSVVLLGGDPGIGKSTLLLQTLAML 111

Query: 92  QKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
               G   +V  E +   I   AR+LG+++  L +      E  +E            ++
Sbjct: 112 PV--GDTLYVTGEESAQQISMRARRLGLEVDGLRLLT----ETQVENVIATCERERPRVL 165

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           VIDS+  L   A              A  + +  ++
Sbjct: 166 VIDSIQTLYTAALQSAPGSVGQVRESAAALVRLAKQ 201


>gi|225559165|gb|EEH07448.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
          Length = 404

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 59/191 (30%), Gaps = 30/191 (15%)

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
             GG  +G I E+ GP   GKT  A+   A   +      ++D                L
Sbjct: 21  STGGIKRGEITEVIGPRGVGKTAFAMGIAASVLQAAQKVVWID--------------EFL 66

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTP------------RAEIE 164
             LL   P T    L +              +IVIDS+++L              +A+  
Sbjct: 67  NQLLYFHPPTIAHLLALISHSPKGFPPPEAGLIVIDSISSLFTSEYRTRQPPGNRKAKFM 126

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP-ETTTGGNAL 223
                     + +++      L     R  C++V IN+M  +              G   
Sbjct: 127 ATAESKNERTRWKIIGNLAMNLKKLAVRLNCVVVVINEMASRFRGKHPPVLHEALSGMTW 186

Query: 224 KFYSSVRLDIR 234
               + R+ + 
Sbjct: 187 DSGVATRIMLC 197


>gi|256829633|ref|YP_003158361.1| DNA repair protein RadA [Desulfomicrobium baculatum DSM 4028]
 gi|256578809|gb|ACU89945.1| DNA repair protein RadA [Desulfomicrobium baculatum DSM 4028]
          Length = 443

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 8/143 (5%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + VSS   GLD  LG G  P G ++ + G    GK+TL L   A  + +G    +V  E 
Sbjct: 62  DRVSSQLSGLDGILGSGFVP-GGVILLGGEPGIGKSTLLLQVTASMENSGKGVVYVSGEE 120

Query: 106 ALDSIYA--RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           +L  I +   +LG+    L +   +  +  L     +       +IV+DSV  +   +  
Sbjct: 121 SLSQIRSRAERLGMLGGRLTVLATNQADDIL-----VCMEDGPALIVVDSVQTMISSSVE 175

Query: 164 EGDMGESLPGMQARLMSQALRKL 186
                 S     A  +++  ++L
Sbjct: 176 GLPGSVSQVRAVATALTERAKQL 198


>gi|327400799|ref|YP_004341638.1| putative circadian clock protein KaiC [Archaeoglobus veneficus
           SNP6]
 gi|327316307|gb|AEA46923.1| putative circadian clock protein, KaiC [Archaeoglobus veneficus
           SNP6]
          Length = 424

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 3/108 (2%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           EV+ +G   +D A  IGG P+  +  I G   SGKT LA    A   +   + A+V  E 
Sbjct: 227 EVIKTGIPTIDRA--IGGIPRTSLTLITGVSGSGKTMLAAQMAANISRE-LSVAYVSLEE 283

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
             + +  +      K++++   +    + E     +     D+  ID 
Sbjct: 284 PEEQVERKLAEFGAKDVMVVSLNPASVSSEEIFARIMGYNSDVFFIDG 331



 Score = 43.7 bits (101), Expect = 0.048,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 41/119 (34%), Gaps = 8/119 (6%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV------- 101
            +G   LD  L  GGFP+G ++ + G   +GKTT A   I +     G            
Sbjct: 10  PTGIEELDALL-DGGFPRGSVILLKGDPGAGKTTFAAKFIYEGITKYGEPGIYISFAEPF 68

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           D  +    +      +D    L       +         +       + IDS+ ALT +
Sbjct: 69  DEFYRFMKLLGMDFNIDNFCYLEFHGFDEDLLASNILEAIVDSNAMRVAIDSITALTAQ 127


>gi|269794027|ref|YP_003313482.1| DNA repair protein RadA [Sanguibacter keddieii DSM 10542]
 gi|269096212|gb|ACZ20648.1| DNA repair protein RadA [Sanguibacter keddieii DSM 10542]
          Length = 473

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 48/134 (35%), Gaps = 3/134 (2%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           +   +G    D  LG GG   G +V + G    GK+TL L   + + + G    ++  E 
Sbjct: 79  QAAPTGISEFDRVLG-GGIVPGAVVLLAGEPGVGKSTLLLDVASTTARAGRRVLYITGEE 137

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +   +  R     +  L  +     E  L      + +   D++++DSV  +        
Sbjct: 138 SAGQVRLRA--ERIDALAPTLLLAAETDLGQVLGQIEATDPDLLIVDSVQTVASAQVDGS 195

Query: 166 DMGESLPGMQARLM 179
             G       A  +
Sbjct: 196 PGGVGQVREVASAL 209


>gi|261346473|ref|ZP_05974117.1| DNA repair protein RadA [Providencia rustigianii DSM 4541]
 gi|282565463|gb|EFB70998.1| DNA repair protein RadA [Providencia rustigianii DSM 4541]
          Length = 460

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 10/146 (6%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E +   ++G    D  LG GG   G  + I G   +GK+TL L T+      G    +V
Sbjct: 71  LEELPRFTTGFKEFDRVLG-GGVVPGSAILIGGSPGAGKSTLLLQTMCLL-SRGMKTLYV 128

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+   +L +    + EQ      +        ++VIDS+  +  
Sbjct: 129 TGEESLQQVAMRAHRLGLPTDSLNMLSETSIEQ----ICLTAEQEQPKLMVIDSIQVMH- 183

Query: 160 RAEIEGDMGE-SLPGMQARLMSQALR 184
            A+I+   G  +     A  +++  +
Sbjct: 184 MADIQSSPGSVAQVRETAAYLTRFAK 209


>gi|149189758|ref|ZP_01868039.1| predicted repair protein [Vibrio shilonii AK1]
 gi|148836407|gb|EDL53363.1| predicted repair protein [Vibrio shilonii AK1]
          Length = 459

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 63/170 (37%), Gaps = 16/170 (9%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   +SG   LD  LG GG   G  + I G   +GK+TL L  +           +V
Sbjct: 70  LQEVPRFTSGFKELDRVLG-GGVVPGAAILIGGNPGAGKSTLLLQAMCWLSSQ-MPTLYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+  ++L +      ++  ++ +         ++VIDS+  +  
Sbjct: 128 TGEESLQQVAMRASRLGLPKEHLKMLSETNVDRICQVAEK----EQPKLMVIDSIQVMHV 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
                     +     A  +++          +   + +FI     K G 
Sbjct: 184 ADVQSSPGSVAQVRESATALTRYA--------KQNNVAIFIVGHVTKDGT 225


>gi|300769734|ref|ZP_07079616.1| DNA repair protein RadA [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|300492642|gb|EFK27828.1| DNA repair protein RadA [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
          Length = 469

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 89/255 (34%), Gaps = 35/255 (13%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           +         V +     +  LG GG   G +V I G    GK+TL L    Q  +TGG+
Sbjct: 71  KEVSLTKTPRVKTKLKEFNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSGQLAETGGS 129

Query: 98  CAFVDAEHALDSIYARKLGVDLKNL-LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
             +V  E +   +  R   + + +      P+T    +      + S   + +VIDSV  
Sbjct: 130 VLYVTGEESASQVKMRADRLAVSSEDFYLYPETD---MSNIRSTIESTHPEFVVIDSVQT 186

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPET 216
           +      +    +S  G  +++       L   I+++  I +FI     K G +      
Sbjct: 187 M------QEPDMDSAIGSVSQIREITAELLQ--IAKTNGITIFIVGHVTKGGAI------ 232

Query: 217 TTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276
             G   L+      L         D          ++ VKN+  S  +   F++      
Sbjct: 233 -AGPKILEHMVDTVLYFEG-----DLHHTY---RILRAVKNRFGSTNELGIFEM------ 277

Query: 277 SFFGELIDLGVKASI 291
              G L ++   + I
Sbjct: 278 -RTGGLYEVANPSEI 291


>gi|167035629|ref|YP_001670860.1| DNA repair protein RadA [Pseudomonas putida GB-1]
 gi|166862117|gb|ABZ00525.1| DNA repair protein RadA [Pseudomonas putida GB-1]
          Length = 456

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 8/146 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I   ++ S  LD  LG GG   G +V I G    GK+T+ L T+      G    +V
Sbjct: 68  VEEIPRFTTSSTELDRVLG-GGLVDGSVVLIGGDPGIGKSTILLQTLCNIAV-GMPALYV 125

Query: 102 DAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +   +   +R+LG+    L +      E  +E      R     ++VIDS+  +  
Sbjct: 126 TGEESQQQVAMRSRRLGLPQDQLKVMT----ETCIETIIATARVEKPRVMVIDSIQTIFT 181

Query: 160 RAEIEGDMGESLPGMQARLMSQALRK 185
                   G +       L+ +  ++
Sbjct: 182 EQLQSAPGGVAQVRESTALLVRYAKQ 207


>gi|26991328|ref|NP_746753.1| DNA repair protein RadA [Pseudomonas putida KT2440]
 gi|148549708|ref|YP_001269810.1| DNA repair protein RadA [Pseudomonas putida F1]
 gi|24986389|gb|AAN70217.1|AE016661_3 DNA repair protein RadA [Pseudomonas putida KT2440]
 gi|148513766|gb|ABQ80626.1| DNA repair protein RadA [Pseudomonas putida F1]
 gi|313500548|gb|ADR61914.1| RadA [Pseudomonas putida BIRD-1]
          Length = 456

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 8/146 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I   ++ S  LD  LG GG   G +V I G    GK+T+ L T+      G    +V
Sbjct: 68  VEEIPRFTTSSTELDRVLG-GGLVDGSVVLIGGDPGIGKSTILLQTLCNIAV-GMPALYV 125

Query: 102 DAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +   +   +R+LG+    L +      E  +E      R     ++VIDS+  +  
Sbjct: 126 TGEESQQQVAMRSRRLGLPQDQLKVMT----ETCIETIIATARVEKPRVMVIDSIQTIFT 181

Query: 160 RAEIEGDMGESLPGMQARLMSQALRK 185
                   G +       L+ +  ++
Sbjct: 182 EQLQSAPGGVAQVRESTALLVRYAKQ 207


>gi|227824949|ref|ZP_03989781.1| DNA repair protein radA [Acidaminococcus sp. D21]
 gi|226905448|gb|EEH91366.1| DNA repair protein radA [Acidaminococcus sp. D21]
          Length = 456

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 61/163 (37%), Gaps = 14/163 (8%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +  + +G    D  LG GG   G ++ + G    GK+T+ L    ++   G    +V  
Sbjct: 69  KVNRIPTGITEFDRVLG-GGIVPGSLILLGGAPGIGKSTITLDVSMKAANRGIPVLYVSG 127

Query: 104 EHALDS--IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           E +     + A +LG     L +         L    +  R  A  ++VIDS+  +   +
Sbjct: 128 EESEAQTAMRAERLGTASDALKVMTAT----ELGTILVEARKDAPKLLVIDSIQTMY-NS 182

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           E+E   G          + +   KL +    S   ++ I  + 
Sbjct: 183 ELETAAG------SVGQVRECTAKLLNFAKESNIAIIIIGHVT 219


>gi|170747753|ref|YP_001754013.1| non-specific serine/threonine protein kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170654275|gb|ACB23330.1| Non-specific serine/threonine protein kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 502

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +GS  LD  LG GG  +G    + GP   GK+T+AL  +  +   G     +  +     
Sbjct: 254 TGSPELDQLLG-GGLDRGTSTMLIGPSGVGKSTVALTCVTAAIARGERALILSFDETTGV 312

Query: 110 IYARKLG 116
           +  R  G
Sbjct: 313 LSRRARG 319



 Score = 45.2 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 3/81 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS+G  GLD  L  GG+   R   I G   SGKTTLA+  +    + G  C ++    + 
Sbjct: 11  VSTGVTGLDHILA-GGYASQRSHLIEGRPGSGKTTLAMQFLLDGVRRGERCLYITLSESR 69

Query: 108 DSIY--ARKLGVDLKNLLISQ 126
             +   A + G  L  + I +
Sbjct: 70  RELLNVAERHGWSLDGIEICE 90


>gi|148976681|ref|ZP_01813368.1| predicted repair protein [Vibrionales bacterium SWAT-3]
 gi|145964032|gb|EDK29290.1| predicted repair protein [Vibrionales bacterium SWAT-3]
          Length = 459

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 16/170 (9%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   SSG   LD  LG GG   G  + I G   +GK+TL L T+        T  +V
Sbjct: 70  LQEVPRFSSGFKELDRVLG-GGVVPGAAILIGGNPGAGKSTLLLQTMCLLSSQLPT-LYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+  ++L +      ++  ++ +         I+VIDS+  +  
Sbjct: 128 TGEESLQQVAMRASRLGLPKEHLKMLSETNVDKICQVAEK----EQPKIMVIDSIQVMHV 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
                     +     A  +++          +   + +F+     K G 
Sbjct: 184 ADVQSSPGSVAQVRESATALTRFA--------KQNNVAIFLVGHVTKDGT 225


>gi|145635697|ref|ZP_01791392.1| predicted repair protein [Haemophilus influenzae PittAA]
 gi|145267020|gb|EDK07029.1| predicted repair protein [Haemophilus influenzae PittAA]
          Length = 458

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +     SSG   LD  LG GG   G  + I G   +GK+TL L  +        T  +V
Sbjct: 69  LQETPRFSSGFNELDRVLG-GGIVPGSAILIGGHPGAGKSTLLLQVMCGLA-KNMTALYV 126

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+    L +    + EQ   ++D L       IIV+DS+  +  
Sbjct: 127 TGEESLQQVAMRASRLGLPNDQLKMLSETSVEQICNLSDQLKPQ----IIVVDSIQVMHL 182

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     +     A  +++  +    +I  
Sbjct: 183 ADIQSSPGSVAQVRECASFLTRYAKTRQVAIIM 215


>gi|119614837|gb|EAW94431.1| RAD51 homolog C (S. cerevisiae), isoform CRA_b [Homo sapiens]
          Length = 305

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 62/201 (30%), Gaps = 45/201 (22%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           + +    LD  LG GG P  +  EI G    GKT L +      Q         G   F+
Sbjct: 100 IITFCSALDDILG-GGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFI 158

Query: 102 DAEHALDSIYARK-----------------------------LGVDLKNLLISQPDTGEQ 132
           D E +                                     L   L ++   +     +
Sbjct: 159 DTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNILSHIYYFRCRDYTE 218

Query: 133 ALE---ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
            L    +    +   +   +VI    A   R +++         ++ RL++   +++ S 
Sbjct: 219 LLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDD------LSLRTRLLNGLAQQMISL 272

Query: 190 ISRSKCILVFINQMRMKIGVM 210
            +  +  ++  NQM  KI   
Sbjct: 273 ANNHRLAVILTNQMTTKIDRN 293


>gi|68249819|ref|YP_248931.1| DNA repair protein RadA [Haemophilus influenzae 86-028NP]
 gi|145632984|ref|ZP_01788717.1| hypothetical protein CGSHi3655_09766 [Haemophilus influenzae 3655]
 gi|229845594|ref|ZP_04465720.1| DNA repair protein RadA [Haemophilus influenzae 6P18H1]
 gi|68058018|gb|AAX88271.1| DNA repair protein RadA homolog [Haemophilus influenzae 86-028NP]
 gi|144986640|gb|EDJ93206.1| hypothetical protein CGSHi3655_09766 [Haemophilus influenzae 3655]
 gi|229811461|gb|EEP47164.1| DNA repair protein RadA [Haemophilus influenzae 6P18H1]
          Length = 458

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +     SSG   LD  LG GG   G  + I G   +GK+TL L  +        T  +V
Sbjct: 69  LQETPRFSSGFNELDRVLG-GGIVPGSAILIGGHPGAGKSTLLLQVMCGLA-KNMTALYV 126

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+    L +    + EQ   ++D L       IIV+DS+  +  
Sbjct: 127 TGEESLQQVAMRASRLGLPNDQLKMLSETSVEQICNLSDQLKPQ----IIVVDSIQVMHL 182

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     +     A  +++  +    +I  
Sbjct: 183 ADIQSSPGSVAQVRECASFLTRYAKTRQVAIIM 215


>gi|260061517|ref|YP_003194597.1| DNA repair protein RadA [Robiginitalea biformata HTCC2501]
 gi|88785649|gb|EAR16818.1| putative DNA repair protein [Robiginitalea biformata HTCC2501]
          Length = 452

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 69/214 (32%), Gaps = 26/214 (12%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG   +  E    +SSG   LD  LG GG   G +  I G    GK+TL L    +   
Sbjct: 60  RLGEIPTDREM--RLSSGDPELDRVLG-GGLVPGSLTLIGGEPGIGKSTLMLQMALKVAL 116

Query: 94  TGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
                 +V  E +   I   A+++  D  +  I       +        + +   +++++
Sbjct: 117 R---TLYVSGEESQRQIAMRAQRIRPDADSCYILTETNTNR----IFKQITALEPELVIV 169

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM------ 205
           DS+  L       G    S              +L      S   ++ I  +        
Sbjct: 170 DSIQTLHSDYLEAGAGSVSQIREC-------TAELIKFAKESHTPVILIGHITKEGSIAG 222

Query: 206 -KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
            KI            G+    +  VR    R G+
Sbjct: 223 PKILEHMVDTVLQFEGDRNHLFRIVRALKNRFGN 256


>gi|309973267|gb|ADO96468.1| DNA repair protein RadA [Haemophilus influenzae R2846]
          Length = 458

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +     SSG   LD  LG GG   G  + I G   +GK+TL L  +        T  +V
Sbjct: 69  LQETPRFSSGFNELDRVLG-GGIVPGSAILIGGHPGAGKSTLLLQVMCGLA-KNMTALYV 126

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+    L +    + EQ   ++D L       IIV+DS+  +  
Sbjct: 127 TGEESLQQVAMRASRLGLPNDQLKMLSETSVEQICNLSDQLKPQ----IIVVDSIQVMHL 182

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     +     A  +++  +    +I  
Sbjct: 183 ADIQSSPGSVAQVRECASFLTRYAKTRQVAIIM 215


>gi|315633922|ref|ZP_07889211.1| DNA repair protein RadA [Aggregatibacter segnis ATCC 33393]
 gi|315477172|gb|EFU67915.1| DNA repair protein RadA [Aggregatibacter segnis ATCC 33393]
          Length = 457

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +     SSG   LD  LG GG   G  + I G   +GK+TL L  +    +   T  +V
Sbjct: 68  LQETPRFSSGFYELDRVLG-GGVVPGSAILIGGHPGAGKSTLLLQVMCYLSQK-MTALYV 125

Query: 102 DAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +   A++LG+  + L +    + EQ   + D L       IIVIDS+  +  
Sbjct: 126 TGEESLQQVAMRAKRLGLPPEKLNMLSETSVEQICNLADQLKPQ----IIVIDSIQVMHL 181

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     +     A  +++  +    +I  
Sbjct: 182 ADIQSSPGSVAQVRECASFLTRYAKTRQVAIIM 214


>gi|301170356|emb|CBW29962.1| predicted repair protein [Haemophilus influenzae 10810]
          Length = 458

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +     SSG   LD  LG G  P G  + I G   +GK+TL L  +        T  +V
Sbjct: 69  LQETPRFSSGFSELDRVLGSGIVP-GSAILIGGHPGAGKSTLLLQVMCGLA-KNMTALYV 126

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+    L +    + EQ   + D L       IIV+DS+  +  
Sbjct: 127 TGEESLQQVAMRASRLGLPNDQLKMLSETSVEQICNLADQLKPQ----IIVVDSIQVMHL 182

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     +     A  +++  +    +I  
Sbjct: 183 ADIQSSPGSVAQVRECASFLTRYAKTRQVAIIM 215


>gi|256855018|ref|ZP_05560379.1| DNA repair protein RadA [Enterococcus faecalis T8]
 gi|307296630|ref|ZP_07576450.1| DNA repair protein RadA [Enterococcus faecalis TX0411]
 gi|256709531|gb|EEU24578.1| DNA repair protein RadA [Enterococcus faecalis T8]
 gi|306495966|gb|EFM65554.1| DNA repair protein RadA [Enterococcus faecalis TX0411]
 gi|315029632|gb|EFT41564.1| DNA repair protein RadA [Enterococcus faecalis TX4000]
          Length = 456

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 68/195 (34%), Gaps = 22/195 (11%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + +    V +  + L+  LG GG   G +V I G    GK+TL L    Q   TGGT  +
Sbjct: 65  VPKKEPRVKTELVELNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSQQLAATGGTVLY 123

Query: 101 VDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           V  E + + I   A +LG   +   +       +        +     D ++IDS+  +T
Sbjct: 124 VSGEESAEQIKLRAERLGTVNETFYLYAETDMHE----ISRAIEKLEPDYVIIDSIQTMT 179

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
                      S        + +        ++++  I +FI     K G +        
Sbjct: 180 QPDVTSVAGSVSQVRETTAELLK--------LAKTNGIAIFIVGHVTKEGSI-------A 224

Query: 219 GGNALKFYSSVRLDI 233
           G   L+      L  
Sbjct: 225 GPRMLEHMVDTVLYF 239


>gi|91228568|ref|ZP_01262488.1| hypothetical protein V12G01_00794 [Vibrio alginolyticus 12G01]
 gi|91187892|gb|EAS74204.1| hypothetical protein V12G01_00794 [Vibrio alginolyticus 12G01]
          Length = 230

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 2/103 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSG   LD  LG GGFP   +VE+    S G+  L L    ++ +T G  AF+     ++
Sbjct: 30  SSGFSELDDLLG-GGFPPHGVVEMESIGSIGELRL-LAPYLKATQTNGMTAFIQPPALVN 87

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           S++   +G+D+  + +  P   + AL   +  ++SG    +++
Sbjct: 88  SLFLHYIGLDINQVWVVTPTHPKDALWAAEQCLKSGVCSNVLL 130


>gi|78357153|ref|YP_388602.1| DNA repair protein RadA [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219558|gb|ABB38907.1| DNA replication and repair protein RadA [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 452

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 2/135 (1%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   LD  LG G  P G  + + G    GK+TL L        +G +  ++  E +L  
Sbjct: 74  TGIAELDRILGRGLVP-GAALLVGGEPGIGKSTLLLQVAGAVAASGRSVLYLSGEESLGQ 132

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +  R   + +         +  +  +   ML    A D++++DSV  LT           
Sbjct: 133 LRGRAERLGV-LYDTMLAVSSSRVEDALPMLEEQPAPDLLIVDSVQTLTSTRAEGLPGSV 191

Query: 170 SLPGMQARLMSQALR 184
           S     +  +++  R
Sbjct: 192 SQVRAVSTELAEKCR 206


>gi|257081383|ref|ZP_05575744.1| DNA repair protein RadA [Enterococcus faecalis E1Sol]
 gi|256989413|gb|EEU76715.1| DNA repair protein RadA [Enterococcus faecalis E1Sol]
          Length = 456

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 68/195 (34%), Gaps = 22/195 (11%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + +    V +  + L+  LG GG   G +V I G    GK+TL L    Q   TGGT  +
Sbjct: 65  VPKKEPRVKTELVELNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSQQLAATGGTVLY 123

Query: 101 VDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           V  E + + I   A +LG   +   +       +        +     D ++IDS+  +T
Sbjct: 124 VSGEESAEQIKLRAERLGTVNETFYLYAETDMHE----ISRAIEKLEPDYVIIDSIQTMT 179

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
                      S        + +        ++++  I +FI     K G +        
Sbjct: 180 QPDVTSVAGSVSQVRETTAELLK--------LAKTNGIAIFIVGHVTKEGSI-------A 224

Query: 219 GGNALKFYSSVRLDI 233
           G   L+      L  
Sbjct: 225 GPRMLEHMVDTVLYF 239


>gi|16331201|ref|NP_441929.1| circadian clock protein KaiC [Synechocystis sp. PCC 6803]
 gi|54036098|sp|P74503|KACL2_SYNY3 RecName: Full=KaiC-like protein 2
 gi|1653695|dbj|BAA18607.1| slr1942 [Synechocystis sp. PCC 6803]
          Length = 505

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 3/82 (3%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           +GIE + +G  G D  L  GG P GR   I G   S KT  A   + +  + G    FV 
Sbjct: 7   DGIEKLETGIPGFDF-LSDGGLPLGRATLIAGTAGSAKTIFASQFLVEGIQRGENGVFVT 65

Query: 103 AEHA--LDSIYARKLGVDLKNL 122
            E          R  G D++  
Sbjct: 66  FEEPPKALRKNMRGFGWDIQQW 87



 Score = 42.9 bits (99), Expect = 0.070,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 52/159 (32%), Gaps = 2/159 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            ++SGS  LD   G G F +  I+ + G   +GKT +    +      G  C     E +
Sbjct: 254 RITSGSEELDRMCGSGFF-RDSIILVSGATGTGKTLMVTEFMDGGVANGERCLVFAFEES 312

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
            + +     G  +    + +    +      +       + ++  D +    P       
Sbjct: 313 REQLIRNATGWGVDFKQMEKEGKLKVVCRYPETTNLENHLIMM-KDIIQEFKPNRVAVDS 371

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           +         +   + +  LTS I + +   +F +    
Sbjct: 372 LSALERVSTLKSFREFIIGLTSFIKQQEIGGLFTSTTPN 410


>gi|307696984|gb|ADN85958.1| disrupted meiotic cDNA 1 protein [Leymus akmolinensis]
          Length = 160

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 19/172 (11%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEI 163
           +   +       L N++ ++  T E    +       +      ++++DSV AL      
Sbjct: 2   IAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR---- 57

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGN 221
               G      + + ++Q L +LT         +   NQ+    G       P+   GG+
Sbjct: 58  VDFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGH 117

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
            L   +++RL +R+           G Q   K+       P  +  F I  G
Sbjct: 118 VLAHAATIRLMLRKGK---------GEQRVCKIFDAPNL-PEGEAIFQITTG 159


>gi|301766940|ref|XP_002918902.1| PREDICTED: DNA repair protein XRCC3-like [Ailuropoda melanoleuca]
          Length = 349

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 7/109 (6%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCA 99
           + +S G   LD  L  GG P   + E+ G  S+GKT LAL      Q        G    
Sbjct: 80  QRLSLGCPVLDGLL-RGGLPLDGLTELAGHSSTGKTQLALQLCLTVQFPRQHGGLGAGAV 138

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           ++  E    ++  ++L    ++L    P      ++  + +      D+
Sbjct: 139 YICTEDVFPNLRLQQLIAQQRHLRTDVPGDVVDRIKFGNQIFIKHVADV 187


>gi|281354182|gb|EFB29766.1| hypothetical protein PANDA_007427 [Ailuropoda melanoleuca]
          Length = 331

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 7/109 (6%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCA 99
           + +S G   LD  L  GG P   + E+ G  S+GKT LAL      Q        G    
Sbjct: 62  QRLSLGCPVLDGLL-RGGLPLDGLTELAGHSSTGKTQLALQLCLTVQFPRQHGGLGAGAV 120

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           ++  E    ++  ++L    ++L    P      ++  + +      D+
Sbjct: 121 YICTEDVFPNLRLQQLIAQQRHLRTDVPGDVVDRIKFGNQIFIKHVADV 169


>gi|237800708|ref|ZP_04589169.1| circadian clock protein kaiC [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331023567|gb|EGI03624.1| circadian clock protein kaiC [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 494

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC--AFVDAEH 105
           VSSG   LD  LG GG   G    I GP  +GK+ ++L    Q+   G        D E 
Sbjct: 248 VSSGIAELDKLLG-GGIESGSSTLILGPSGTGKSLISLVFAVQAVARGERVGLFIFDEEL 306

Query: 106 ALDSIYARKLGVDLKNL 122
            L      KLG+DL+ L
Sbjct: 307 GLLFERMLKLGIDLRAL 323



 Score = 41.4 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 3/102 (2%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G  GLD  L  GG  +  +  + G   +GKTT+AL  +      G    ++        
Sbjct: 8   TGIEGLDDILA-GGLSRSHVFLLEGEPGTGKTTIALQFLQAGAAAGEISLYITLSETEKE 66

Query: 110 IYARKL--GVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + +     G +L   +     T  ++L   D          +
Sbjct: 67  LRSGAASHGWELDEQINIFELTPPESLIDADHQQSLLYSSDL 108


>gi|329576203|gb|EGG57721.1| DNA repair protein RadA [Enterococcus faecalis TX1467]
          Length = 456

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 68/195 (34%), Gaps = 22/195 (11%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           I +    V +  + L+  LG GG   G +V I G    GK+TL L    Q   TGGT  +
Sbjct: 65  IPKKEPRVKTELVELNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSQQLAATGGTVLY 123

Query: 101 VDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           V  E + + I   A +LG   +   +       +        +     D ++IDS+  +T
Sbjct: 124 VSGEESAEQIKLRAERLGTVNETFYLYAETDMHE----ISRAIEKLEPDYVIIDSIQTMT 179

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
                      S        + +        ++++  I +FI     K G +        
Sbjct: 180 QPDVTSVAGSVSQVRETTAELLK--------LAKTNGIAIFIVGHVTKEGSI-------A 224

Query: 219 GGNALKFYSSVRLDI 233
           G   L+      L  
Sbjct: 225 GPRMLEHMVDTVLYF 239


>gi|325578144|ref|ZP_08148279.1| DNA repair protein RadA [Haemophilus parainfluenzae ATCC 33392]
 gi|325159880|gb|EGC72009.1| DNA repair protein RadA [Haemophilus parainfluenzae ATCC 33392]
          Length = 459

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 57/153 (37%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +     +SG   LD  LG GG   G  + I G   +GK+TL L  +        T  +V
Sbjct: 70  LQETPRFTSGFKELDRVLG-GGIVPGSAILIGGHPGAGKSTLLLQVMCGLA-KNMTALYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +L +    L +    + EQ   + D L       IIV+DS+  +  
Sbjct: 128 TGEESLQQVAMRANRLNLPTDKLNMLSETSVEQICNLADQLKPQ----IIVVDSIQVMHL 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     +     A  +++  +    +I  
Sbjct: 184 SDIQSSPGSVAQVRECASFLTRYAKTRQVAIIM 216


>gi|301156046|emb|CBW15517.1| predicted repair protein [Haemophilus parainfluenzae T3T1]
          Length = 459

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 57/153 (37%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +     +SG   LD  LG GG   G  + I G   +GK+TL L  +        T  +V
Sbjct: 70  LQETPRFTSGFKELDRVLG-GGIVPGSAILIGGHPGAGKSTLLLQVMCGLA-KNMTALYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +L +    L +    + EQ   + D L       IIV+DS+  +  
Sbjct: 128 TGEESLQQVAMRANRLNLPTDKLNMLSETSVEQICNLADQLKPQ----IIVVDSIQVMHL 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     +     A  +++  +    +I  
Sbjct: 184 SDIQSSPGSVAQVRECASFLTRYAKTRQVAIIM 216


>gi|284034288|ref|YP_003384219.1| DNA repair protein RadA [Kribbella flavida DSM 17836]
 gi|283813581|gb|ADB35420.1| DNA repair protein RadA [Kribbella flavida DSM 17836]
          Length = 469

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 76/225 (33%), Gaps = 26/225 (11%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E  ++G   LD  LG GG   G ++ + G    GK+TL L   AQS + G    +V  E 
Sbjct: 74  ESRATGIGELDRVLG-GGVVPGAVILLAGEPGVGKSTLLLEVAAQSARNGHRTLYVSGEE 132

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +   +  R        L+       E  L      V       +VIDSV  +    E++G
Sbjct: 133 SAAQVRLRA--GRTDALVDELYLAAETDLSAVVGQVDVVEPAFLVIDSVQTMA-HPEVDG 189

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
             G          + +    L          +V +  +     +         G   L+ 
Sbjct: 190 APG------GVTQVREVTGALVRLAKERNIAVVLVGHVTKDGAI--------AGPRMLEH 235

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
              V L         D D  +G +  V+  KN+     +   FD+
Sbjct: 236 LVDVVLAF-------DGDRHSGFRM-VRATKNRFGPSDEVGCFDM 272


>gi|282600836|ref|ZP_05979836.2| DNA repair protein RadA [Subdoligranulum variabile DSM 15176]
 gi|282571071|gb|EFB76606.1| DNA repair protein RadA [Subdoligranulum variabile DSM 15176]
          Length = 432

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 4/118 (3%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99
           S  E    + +G   LD  LG GG   G ++ I G    GK+T+ L    +  KT     
Sbjct: 38  STTEEKSRIITGISELDRVLG-GGIVIGSVILIGGEPGIGKSTILLQLCGEVSKT-KNVL 95

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           +V  E ++  I  R + +D+    IS     +  ++    L+ S   D++VIDS+  +
Sbjct: 96  YVTGEESVRQIKLRAVRLDVPQENISLVAESD--VDEICGLIESMKPDLVVIDSIQTM 151


>gi|170743981|ref|YP_001772636.1| putative circadian clock protein, KaiC [Methylobacterium sp. 4-46]
 gi|168198255|gb|ACA20202.1| putative circadian clock protein, KaiC [Methylobacterium sp. 4-46]
          Length = 502

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 13/123 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E ++SG    D  LG GG  +G    + GP   GK++ AL  +  + + G     +  + 
Sbjct: 250 ERLTSGIAAFDALLG-GGLDRGTSTMLLGPSGVGKSSSALAFLVSALQRGDHALILSFDE 308

Query: 106 ALD--SIYARKLGVDLKNLLIS----------QPDTGEQALEITDMLVRSGAVDIIVIDS 153
           A       AR LG+D++    S             +  +   I    V      +++IDS
Sbjct: 309 ASSVLKRRARGLGMDIEPYCQSGLLRLEQIDPAEVSPGELTAIVREAVERDDARVVLIDS 368

Query: 154 VAA 156
           +  
Sbjct: 369 LTG 371



 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 66/173 (38%), Gaps = 11/173 (6%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
            +  +    +++G  GLD  LG GG+   R   I G   SGKTTLAL  +    + G  C
Sbjct: 2   TAPSDDATRIATGVPGLDYILG-GGYAANRAHLIEGRPGSGKTTLALQFLLDGARAGERC 60

Query: 99  AFVDAEHALDSIY--ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD-------II 149
            ++    +   +   A + G  L  + + +    E +L+ +       + D        +
Sbjct: 61  LYITLSESRRELLNVAERHGWSLDGIEVFELVPPELSLDPSQQQSLVHSSDLELGETVRM 120

Query: 150 VIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
            I  +  + P+  +   + E  L    +    + +  L S +       + ++
Sbjct: 121 AIAEIDRIKPQRVVVDSLSEIRLLSQGSLRFRRQVLALRSFLLIHDTTALLLD 173


>gi|294786568|ref|ZP_06751822.1| DNA repair protein RadA [Parascardovia denticolens F0305]
 gi|294485401|gb|EFG33035.1| DNA repair protein RadA [Parascardovia denticolens F0305]
          Length = 484

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 7/142 (4%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK----TGGT 97
            E +  + +G    D  LG GG   G ++ + G    GK+TL L T     +    TG  
Sbjct: 89  LEDVVRIPTGFGEFDRVLG-GGIVPGAVILMAGEPGIGKSTLLLETAGNIARSLVSTGKR 147

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
             ++  E +L  I  R     +  ++ +        L     L++     + ++DSV  +
Sbjct: 148 VLYISGEESLSQIRMRA--RRIGAVVDNLLLASTMDLGTVVSLIQEEKPALAIVDSVQTI 205

Query: 158 TPRAEIEGDMGESLPGMQARLM 179
           +         G +     A  +
Sbjct: 206 SSPDVDGIQGGNAQIRQVAAEV 227


>gi|170290359|ref|YP_001737175.1| ATPase [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170174439|gb|ACB07492.1| RecA-superfamily ATPase [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 260

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 94/243 (38%), Gaps = 21/243 (8%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++ +S+G   LD  L  GG P+G +V I G   +GK+ L  H   +  + G    +V  E
Sbjct: 1   MDRLSTGIRKLDEML-EGGIPRGFLVAITGEPGTGKSILCQHFAWRGYEEGDKVIYVTTE 59

Query: 105 HALDSIYARK--LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            + +SI  +   LG+D++  +         AL  TD              S+ +L P A 
Sbjct: 60  ESRNSILEQAELLGMDIRKGVEEGKVIVIDALLATDEW------------SLTSLDPEA- 106

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           +   + ++   +        +  L++       +    +    K+   +      T   A
Sbjct: 107 LVQKVIDAKKKLGYGRARLIIDSLSAFWLDKPAMARKYSYYIKKVFSKWDFTILATSQYA 166

Query: 223 LKF--YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM---ASPFKQVEFDIMYGEGIS 277
           +         ++    G I+ + S+ G + R  ++  KM       +  E +I+ G+G+ 
Sbjct: 167 ISTSEAFGFGIEHIADGIIRFRRSVKGGRLRRFLMIEKMRQTNHDLRMYEIEIIPGKGME 226

Query: 278 FFG 280
             G
Sbjct: 227 IIG 229


>gi|4510403|gb|AAD21490.1| putative RAD51B-like DNA repair protein [Arabidopsis thaliana]
          Length = 353

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 73/235 (31%), Gaps = 33/235 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCAFV 101
           + +   GLD  L  GG P G + E+ GP   GK+   +                G   ++
Sbjct: 85  LPTHLKGLDDTL-CGGIPFGVLTELVGPPGIGKSQFCMKLALSASFPVAYGGLDGRVIYI 143

Query: 102 DAEHALDSIYARKLGV-------DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           D E    S    ++G+        LK +           ++     +    V ++VIDS+
Sbjct: 144 DVESKFSSRRVIEMGLESFPEVFHLKGMAQEVVCGTAICIQELKNSILQNQVKLLVIDSM 203

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
            AL       G   +   G     +      +T+ +             + K+   F   
Sbjct: 204 TALLSGENKPGAQRQPQLGWHISFLK--YELVTNQVRSQNRDETSQYSFQAKVKDEFKDN 261

Query: 215 ETTTGGN-------ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
             T   +             ++RL +      K    I       KV K+ M+ P
Sbjct: 262 TKTYDSHLVAALGINWAHAVTIRLVLEA----KSGKRII------KVAKSPMSPP 306


>gi|258541794|ref|YP_003187227.1| DNA repair protein RadA [Acetobacter pasteurianus IFO 3283-01]
 gi|256632872|dbj|BAH98847.1| DNA repair protein RadA [Acetobacter pasteurianus IFO 3283-01]
 gi|256635929|dbj|BAI01898.1| DNA repair protein RadA [Acetobacter pasteurianus IFO 3283-03]
 gi|256638984|dbj|BAI04946.1| DNA repair protein RadA [Acetobacter pasteurianus IFO 3283-07]
 gi|256642038|dbj|BAI07993.1| DNA repair protein RadA [Acetobacter pasteurianus IFO 3283-22]
 gi|256645093|dbj|BAI11041.1| DNA repair protein RadA [Acetobacter pasteurianus IFO 3283-26]
 gi|256648148|dbj|BAI14089.1| DNA repair protein RadA [Acetobacter pasteurianus IFO 3283-32]
 gi|256651201|dbj|BAI17135.1| DNA repair protein RadA [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654192|dbj|BAI20119.1| DNA repair protein RadA [Acetobacter pasteurianus IFO 3283-12]
          Length = 463

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 58/158 (36%), Gaps = 2/158 (1%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG  + L +     +      +G   LD  LG GG     +V + G    GK+TL L  
Sbjct: 52  GKGRRVALQALEGEIKLPPRTQTGIAELDRVLG-GGLVPASVVLVGGDPGIGKSTLLLQA 110

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
            ++    G    ++  E A+D I  R   + +    +    +     +I   L     V 
Sbjct: 111 ASKLAGKGERVLYISGEEAVDQIRLRAQRLGVAGAKLDLAASIN-VADIVATLEAEPDVR 169

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
            +VIDS+  +            S     A  + +A ++
Sbjct: 170 AVVIDSIQTMWLETIDSAPGTVSQVRACAFELIRAAKR 207


>gi|227518070|ref|ZP_03948119.1| DNA repair protein RadA [Enterococcus faecalis TX0104]
 gi|229547091|ref|ZP_04435816.1| DNA repair protein RadA [Enterococcus faecalis TX1322]
 gi|229550663|ref|ZP_04439388.1| DNA repair protein RadA [Enterococcus faecalis ATCC 29200]
 gi|255971586|ref|ZP_05422172.1| DNA repair protein RadA [Enterococcus faecalis T1]
 gi|255974558|ref|ZP_05425144.1| DNA repair protein RadA [Enterococcus faecalis T2]
 gi|256618490|ref|ZP_05475336.1| DNA repair protein RadA [Enterococcus faecalis ATCC 4200]
 gi|256964019|ref|ZP_05568190.1| DNA repair protein RadA [Enterococcus faecalis HIP11704]
 gi|257084043|ref|ZP_05578404.1| DNA repair protein RadA [Enterococcus faecalis Fly1]
 gi|257088525|ref|ZP_05582886.1| DNA repair protein radA [Enterococcus faecalis CH188]
 gi|257417463|ref|ZP_05594457.1| DNA repair protein RadA [Enterococcus faecalis AR01/DG]
 gi|257421379|ref|ZP_05598369.1| DNA repair protein radA [Enterococcus faecalis X98]
 gi|293382255|ref|ZP_06628195.1| DNA repair protein RadA [Enterococcus faecalis R712]
 gi|293386696|ref|ZP_06631269.1| DNA repair protein RadA [Enterococcus faecalis S613]
 gi|300861972|ref|ZP_07108052.1| DNA repair protein RadA [Enterococcus faecalis TUSoD Ef11]
 gi|307274051|ref|ZP_07555261.1| DNA repair protein RadA [Enterococcus faecalis TX0855]
 gi|307276285|ref|ZP_07557412.1| DNA repair protein RadA [Enterococcus faecalis TX2134]
 gi|307284098|ref|ZP_07564268.1| DNA repair protein RadA [Enterococcus faecalis TX0860]
 gi|307287142|ref|ZP_07567213.1| DNA repair protein RadA [Enterococcus faecalis TX0109]
 gi|312901257|ref|ZP_07760540.1| DNA repair protein RadA [Enterococcus faecalis TX0470]
 gi|312903149|ref|ZP_07762330.1| DNA repair protein RadA [Enterococcus faecalis TX0635]
 gi|312908767|ref|ZP_07767706.1| DNA repair protein RadA [Enterococcus faecalis DAPTO 512]
 gi|312952474|ref|ZP_07771342.1| DNA repair protein RadA [Enterococcus faecalis TX0102]
 gi|312979227|ref|ZP_07790931.1| DNA repair protein RadA [Enterococcus faecalis DAPTO 516]
 gi|227074506|gb|EEI12469.1| DNA repair protein RadA [Enterococcus faecalis TX0104]
 gi|229304229|gb|EEN70225.1| DNA repair protein RadA [Enterococcus faecalis ATCC 29200]
 gi|229307820|gb|EEN73807.1| DNA repair protein RadA [Enterococcus faecalis TX1322]
 gi|255962604|gb|EET95080.1| DNA repair protein RadA [Enterococcus faecalis T1]
 gi|255967430|gb|EET98052.1| DNA repair protein RadA [Enterococcus faecalis T2]
 gi|256598017|gb|EEU17193.1| DNA repair protein RadA [Enterococcus faecalis ATCC 4200]
 gi|256954515|gb|EEU71147.1| DNA repair protein RadA [Enterococcus faecalis HIP11704]
 gi|256992073|gb|EEU79375.1| DNA repair protein RadA [Enterococcus faecalis Fly1]
 gi|256997337|gb|EEU83857.1| DNA repair protein radA [Enterococcus faecalis CH188]
 gi|257159291|gb|EEU89251.1| DNA repair protein RadA [Enterococcus faecalis ARO1/DG]
 gi|257163203|gb|EEU93163.1| DNA repair protein radA [Enterococcus faecalis X98]
 gi|291080369|gb|EFE17733.1| DNA repair protein RadA [Enterococcus faecalis R712]
 gi|291083865|gb|EFE20828.1| DNA repair protein RadA [Enterococcus faecalis S613]
 gi|295112374|emb|CBL31011.1| DNA replication and repair protein RadA [Enterococcus sp. 7L76]
 gi|300848497|gb|EFK76254.1| DNA repair protein RadA [Enterococcus faecalis TUSoD Ef11]
 gi|306501740|gb|EFM71031.1| DNA repair protein RadA [Enterococcus faecalis TX0109]
 gi|306503469|gb|EFM72718.1| DNA repair protein RadA [Enterococcus faecalis TX0860]
 gi|306507028|gb|EFM76171.1| DNA repair protein RadA [Enterococcus faecalis TX2134]
 gi|306509359|gb|EFM78419.1| DNA repair protein RadA [Enterococcus faecalis TX0855]
 gi|310625205|gb|EFQ08488.1| DNA repair protein RadA [Enterococcus faecalis DAPTO 512]
 gi|310629570|gb|EFQ12853.1| DNA repair protein RadA [Enterococcus faecalis TX0102]
 gi|310633540|gb|EFQ16823.1| DNA repair protein RadA [Enterococcus faecalis TX0635]
 gi|311287992|gb|EFQ66548.1| DNA repair protein RadA [Enterococcus faecalis DAPTO 516]
 gi|311291634|gb|EFQ70190.1| DNA repair protein RadA [Enterococcus faecalis TX0470]
 gi|315143644|gb|EFT87660.1| DNA repair protein RadA [Enterococcus faecalis TX2141]
 gi|315149017|gb|EFT93033.1| DNA repair protein RadA [Enterococcus faecalis TX4244]
 gi|315151329|gb|EFT95345.1| DNA repair protein RadA [Enterococcus faecalis TX0012]
 gi|315153512|gb|EFT97528.1| DNA repair protein RadA [Enterococcus faecalis TX0031]
 gi|315155083|gb|EFT99099.1| DNA repair protein RadA [Enterococcus faecalis TX0043]
 gi|315158526|gb|EFU02543.1| DNA repair protein RadA [Enterococcus faecalis TX0312]
 gi|315163373|gb|EFU07390.1| DNA repair protein RadA [Enterococcus faecalis TX0645]
 gi|315165688|gb|EFU09705.1| DNA repair protein RadA [Enterococcus faecalis TX1302]
 gi|315171284|gb|EFU15301.1| DNA repair protein RadA [Enterococcus faecalis TX1342]
 gi|315174144|gb|EFU18161.1| DNA repair protein RadA [Enterococcus faecalis TX1346]
 gi|315578636|gb|EFU90827.1| DNA repair protein RadA [Enterococcus faecalis TX0630]
 gi|323479277|gb|ADX78716.1| DNA repair protein RadA [Enterococcus faecalis 62]
 gi|327533892|gb|AEA92726.1| DNA repair protein RadA [Enterococcus faecalis OG1RF]
          Length = 456

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 68/195 (34%), Gaps = 22/195 (11%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + +    V +  + L+  LG GG   G +V I G    GK+TL L    Q   TGGT  +
Sbjct: 65  VPKKEPRVKTELVELNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSQQLAATGGTVLY 123

Query: 101 VDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           V  E + + I   A +LG   +   +       +        +     D ++IDS+  +T
Sbjct: 124 VSGEESAEQIKLRAERLGTVNETFYLYAETDMHE----ISRAIEKLEPDYVIIDSIQTMT 179

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
                      S        + +        ++++  I +FI     K G +        
Sbjct: 180 QPDVTSVAGSVSQVRETTAELLK--------LAKTNGIAIFIVGHVTKEGSI-------A 224

Query: 219 GGNALKFYSSVRLDI 233
           G   L+      L  
Sbjct: 225 GPRMLEHMVDTVLYF 239


>gi|170718512|ref|YP_001783723.1| DNA repair protein RadA [Haemophilus somnus 2336]
 gi|168826641|gb|ACA32012.1| DNA repair protein RadA [Haemophilus somnus 2336]
          Length = 458

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +     +SG   LD  LG GG   G  + I G   +GK+TL L  +    ++  T  ++
Sbjct: 69  LQETPRFTSGFRELDRVLG-GGIVPGSAILIGGHPGAGKSTLLLQVMCGLAQS-MTALYI 126

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+    L +    + EQ   + D L       IIVIDS+  +  
Sbjct: 127 TGEESLQQVAMRANRLGLPTDRLQLLSETSIEQICHLADQLKPQ----IIVIDSIQVMHL 182

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     +     A  +++  +    +I  
Sbjct: 183 SDIQSSPGSVAQVRECAAFLTRYAKTRQVAIIM 215


>gi|113461331|ref|YP_719400.1| DNA repair protein RadA [Haemophilus somnus 129PT]
 gi|112823374|gb|ABI25463.1| DNA repair protein [Haemophilus somnus 129PT]
          Length = 458

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +     +SG   LD  LG GG   G  + I G   +GK+TL L  +    ++  T  ++
Sbjct: 69  LQETPRFTSGFRELDRVLG-GGIVPGSAILIGGHPGAGKSTLLLQVMCGLAQS-MTALYI 126

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+    L +    + EQ   + D L       IIVIDS+  +  
Sbjct: 127 TGEESLQQVAMRANRLGLPTDRLQLLSETSIEQICHLADQLKPQ----IIVIDSIQVMHL 182

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     +     A  +++  +    +I  
Sbjct: 183 SDIQSSPGSVAQVRECAAFLTRYAKTRQVAIIM 215


>gi|329114426|ref|ZP_08243188.1| DNA repair protein RadA-like protein [Acetobacter pomorum DM001]
 gi|326696502|gb|EGE48181.1| DNA repair protein RadA-like protein [Acetobacter pomorum DM001]
          Length = 463

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 58/158 (36%), Gaps = 2/158 (1%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           GKG  + L +     +      +G   LD  LG GG     +V + G    GK+TL L  
Sbjct: 52  GKGRRVALQALEGEIKLPPRTQTGIAELDRVLG-GGLVPASVVLVGGDPGIGKSTLLLQA 110

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
            ++    G    ++  E A+D I  R   + +    +    +     +I   L     V 
Sbjct: 111 ASKLAGKGERVLYISGEEAVDQIRLRAQRLGVAGAKLDLAASIN-VADIVATLEAEPDVR 169

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
            +VIDS+  +            S     A  + +A ++
Sbjct: 170 AVVIDSIQTMWLETIDSAPGTVSQVRACAFELIRAAKR 207


>gi|327481615|gb|AEA84925.1| circadian oscillation regulator [Pseudomonas stutzeri DSM 4166]
          Length = 508

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/179 (22%), Positives = 75/179 (41%), Gaps = 11/179 (6%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + +  + +S+GS GLD  LG GG    R+    G   SGKTT+AL  + +  + G    +
Sbjct: 11  MDDEAQRISTGSEGLDNILG-GGLDPNRMYLYEGSPGSGKTTIALQFLLEGVRRGERVLY 69

Query: 101 VDAEH--ALDSIYARKLGVDLKNL----LISQPDTGEQALEITDMLVRSGAVDII---VI 151
           V      A   + A++ G  L  +    L+S   + +  LE+T +      +      V 
Sbjct: 70  VTLSETKAELELVAKRHGWSLDGIDVFELVSPETSLDPELELTVLHPAEMELSETTQQVF 129

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLM-SQALRKLTSSISRSKCILVFINQMRMKIGV 209
           D V+   P   I   + E     Q+ L   + +  L    +  +C ++ ++    ++G 
Sbjct: 130 DRVSETNPTRVIFDSLSEMRLLAQSPLRYRRQVLALKHFFTTRRCTVILLDDQTSEMGD 188



 Score = 45.6 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           EV SSG+  LD  LG GG  +G    + G    GK++LAL     + + G   AF   + 
Sbjct: 257 EVASSGNEMLDRMLG-GGLERGTNALLVGAAGVGKSSLALTYAYAACQRGEQVAFFVFDE 315

Query: 106 ALDSI--YARKLGVDLKNLLI 124
            + ++    R LG+D++  + 
Sbjct: 316 NIGTLLTRGRALGMDIEPWIE 336


>gi|209944554|gb|ACI96508.1| spindle D [Drosophila yakuba]
          Length = 212

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 8/102 (7%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           + +G+  LD   G GG   G +VE+ G   +GKT + L      Q         G+  F+
Sbjct: 46  ILTGNKALDTHFG-GGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFI 104

Query: 102 DAEHALDSIYARKLGVDLK-NLLISQPDTGEQALEITDMLVR 142
           D          ++L + L+       P+     +      V+
Sbjct: 105 DTNQDFHPDRLKELALKLERQYAHKVPEFKAHKMLQKVYYVK 146


>gi|146283220|ref|YP_001173373.1| circadian oscillation regulator [Pseudomonas stutzeri A1501]
 gi|145571425|gb|ABP80531.1| circadian oscillation regulator [Pseudomonas stutzeri A1501]
          Length = 508

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/179 (22%), Positives = 75/179 (41%), Gaps = 11/179 (6%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + +  + +S+GS GLD  LG GG    R+    G   SGKTT+AL  + +  + G    +
Sbjct: 11  MDDEAQRISTGSEGLDNILG-GGLDPNRMYLYEGSPGSGKTTIALQFLLEGVRRGERVLY 69

Query: 101 VDAEH--ALDSIYARKLGVDLKNL----LISQPDTGEQALEITDMLVRSGAVDII---VI 151
           V      A   + A++ G  L  +    L+S   + +  LE+T +      +      V 
Sbjct: 70  VTLSETKAELELVAKRHGWSLDGIDVFELVSPETSLDPELELTVLHPAEMELSETTQQVF 129

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLM-SQALRKLTSSISRSKCILVFINQMRMKIGV 209
           D V+   P   I   + E     Q+ L   + +  L    +  +C ++ ++    ++G 
Sbjct: 130 DRVSETNPTRVIFDSLSEMRLLAQSPLRYRRQVLALKHFFTTRRCTVILLDDQTSEMGD 188



 Score = 45.6 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           EV SSG+  LD  LG GG  +G    + G    GK++LAL     + + G   AF   + 
Sbjct: 257 EVASSGNEMLDRMLG-GGLERGTNALLVGAAGVGKSSLALTYAYAACQRGEQVAFFVFDE 315

Query: 106 ALDSI--YARKLGVDLKNLLI 124
            + ++    R LG+D++  + 
Sbjct: 316 NIGTLLTRGRALGMDIEPWIE 336


>gi|158520390|ref|YP_001528260.1| DNA repair protein RadA [Desulfococcus oleovorans Hxd3]
 gi|158509216|gb|ABW66183.1| DNA repair protein RadA [Desulfococcus oleovorans Hxd3]
          Length = 452

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 67/188 (35%), Gaps = 19/188 (10%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            + +     D  LG GG   G +V + G    GK+TL L    +  + G T  +V  E +
Sbjct: 66  RIHTAIGEFDRVLG-GGIVAGSLVLVGGDPGIGKSTLMLQAAQKLSENGCTVLYVSGEES 124

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           L  I  R       +L  S     E  +E    L RS   D++VIDS+  ++        
Sbjct: 125 LRQIKMRS-RRLCPSLSSSLLAAAETDIERVTALARSAKPDVMVIDSIQTMSS------- 176

Query: 167 MGE-SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
            G+ S        + +A  +L +   ++   +  I  +     +         G   ++ 
Sbjct: 177 -GDFSSAPGSVGQVREATMRLMALAKKTGICVFLIGHVTKDGSI--------AGPRIMEH 227

Query: 226 YSSVRLDI 233
                L  
Sbjct: 228 MVDTVLYF 235


>gi|325271206|ref|ZP_08137754.1| DNA repair protein RadA [Pseudomonas sp. TJI-51]
 gi|324103664|gb|EGC00963.1| DNA repair protein RadA [Pseudomonas sp. TJI-51]
          Length = 456

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 8/146 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I   ++ S  LD  LG GG   G +V I G    GK+T+ L T+      G    +V
Sbjct: 68  VEEIPRFTTSSTELDRVLG-GGLVDGSVVLIGGDPGIGKSTILLQTLCNIAV-GMPALYV 125

Query: 102 DAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +   +   +R+LG+    L +      E  +E      R     ++VIDS+  +  
Sbjct: 126 TGEESQQQVAMRSRRLGLPQDKLKVMT----ETCIETIIATARVEKPRVMVIDSIQTIFT 181

Query: 160 RAEIEGDMGESLPGMQARLMSQALRK 185
                   G +       L+ +  ++
Sbjct: 182 EQLQSAPGGVAQVRESTALLVRYAKQ 207


>gi|315226151|ref|ZP_07867939.1| DNA repair protein RadA [Parascardovia denticolens DSM 10105]
 gi|315120283|gb|EFT83415.1| DNA repair protein RadA [Parascardovia denticolens DSM 10105]
          Length = 466

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 7/142 (4%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK----TGGT 97
            E +  + +G    D  LG GG   G ++ + G    GK+TL L T     +    TG  
Sbjct: 71  LEDVVRIPTGFGEFDRVLG-GGIVPGAVILMAGEPGIGKSTLLLETAGNIARSLVSTGKR 129

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
             ++  E +L  I  R     +  ++ +        L     L++     + ++DSV  +
Sbjct: 130 VLYISGEESLSQIRMRA--RRIGAVVDNLLLASTMDLGTVVSLIQEEKPALAIVDSVQTI 187

Query: 158 TPRAEIEGDMGESLPGMQARLM 179
           +         G +     A  +
Sbjct: 188 SSPDVDGIQGGNAQIRQVAAEV 209


>gi|90969172|gb|ABE02571.1| RAD51D splice variant b [Arabidopsis thaliana]
 gi|90969181|gb|ABE02659.1| RAD51D splice variant b [Arabidopsis thaliana]
          Length = 232

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 4/116 (3%)

Query: 2   DYRKEMNIVDKSKA-LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
            + +     D+ K  +   LS I+R   +  +  L     +      +S+G    D  L 
Sbjct: 43  AFSQRQTNADRLKEGITLILSLIERQ-CRPLVNGLKLLEDLHRNKHTLSTGDKETDSLL- 100

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GTCAFVDAEHALDSIYARKL 115
            GGF +G++ E+ GP SSGKT   +   A   +   G   ++D  ++  +    + 
Sbjct: 101 QGGFREGQLTELVGPSSSGKTQFCMQAAASVAENHLGRVLYLDTGNSFSARRIAQF 156


>gi|90969176|gb|ABE02575.1| RAD51D splice variant f [Arabidopsis thaliana]
 gi|90969189|gb|ABE02663.1| RAD51D splice variant f [Arabidopsis thaliana]
          Length = 174

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 4/116 (3%)

Query: 2   DYRKEMNIVDKSKA-LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
            + +     D+ K  +   LS I+R   +  +  L     +      +S+G    D  L 
Sbjct: 43  AFSQRQTNADRLKEGITLILSLIERQ-CRPLVNGLKLLEDLHRNKHTLSTGDKETDSLL- 100

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GTCAFVDAEHALDSIYARKL 115
            GGF +G++ E+ GP SSGKT   +   A   +   G   ++D  ++  +    + 
Sbjct: 101 QGGFREGQLTELVGPSSSGKTQFCMQAAASVAENHLGRVLYLDTGNSFSARRIAQF 156


>gi|326931485|ref|XP_003211859.1| PREDICTED: DNA repair protein RAD51 homolog 3-like [Meleagris
           gallopavo]
          Length = 355

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 68/225 (30%), Gaps = 46/225 (20%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           + +    LD  LG GG    +I EI G    GKT L +      Q         G   F+
Sbjct: 78  IITFCSALDNILG-GGVQLTKITEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFI 136

Query: 102 DAEHALDSIYAR-----------------------------KLGVDLKNLLISQPDTGEQ 132
           D E +     A                               L   L ++   +     +
Sbjct: 137 DTEGSFMVDRAADIATACVQHCQLIAEAHQEEDHLKALETFSLESILSHIYYFRCRDYIE 196

Query: 133 ALE---ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
            L    +    +   +   +V+    A   R + E         ++ RL++   ++L   
Sbjct: 197 LLAQVYLLPDFLSEHSKVRLVVIDGIAFPFRHDFED------LSLRTRLLNGLAQQLIII 250

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
            +  K  +V  NQM  + G          G +     ++VRL   
Sbjct: 251 ANDHKSAVVLTNQMTTRFGQNQSMLVPALGES-WGHAATVRLIFH 294


>gi|322827814|gb|EFZ31820.1| DNA repair protein, putative [Trypanosoma cruzi]
          Length = 389

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 27/49 (55%)

Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
          V S+GS  +D  L  GG   G ++EI+GP ++GK+ L    +A     G
Sbjct: 42 VFSTGSAAIDRLLPDGGVACGTVLEIFGPPAAGKSHLVQQMVAAFAARG 90


>gi|294634702|ref|ZP_06713234.1| DNA repair protein RadA [Edwardsiella tarda ATCC 23685]
 gi|291091878|gb|EFE24439.1| DNA repair protein RadA [Edwardsiella tarda ATCC 23685]
          Length = 463

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 64/146 (43%), Gaps = 10/146 (6%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E +   S+G +  D  LG GG   G  + I G   +GK+TL L T+ +  +      +V
Sbjct: 73  LEALPRFSTGFVEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCRLAQQ-MKTLYV 130

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+  + L +    + EQ   I +         ++VIDS+  +  
Sbjct: 131 TGEESLQQVAMRAHRLGLPTEGLNMLSETSIEQICLIAE----QEQPKLMVIDSIQVMH- 185

Query: 160 RAEIEGDMGE-SLPGMQARLMSQALR 184
            A+I+   G  +     A  +++  +
Sbjct: 186 MADIQSSPGSVAQVRETAAYLTRFAK 211


>gi|118100296|ref|XP_415870.2| PREDICTED: similar to Rad51C [Gallus gallus]
          Length = 366

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 68/225 (30%), Gaps = 46/225 (20%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           + +    LD  LG GG    +I EI G    GKT L +      Q         G   F+
Sbjct: 91  IITFCSALDNILG-GGVQLTKITEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFI 149

Query: 102 DAEHALDSIYAR-----------------------------KLGVDLKNLLISQPDTGEQ 132
           D E +     A                               L   L ++   +     +
Sbjct: 150 DTEGSFMVDRAADIATACVRHCQLIAEAHQEEDHLQALETFSLESILSHIYYFRCRDYIE 209

Query: 133 ALE---ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
            L    +    +   +   +V+    A   R + E         ++ RL++   ++L   
Sbjct: 210 LLAQVYLLPDFLSEHSKVRLVVIDGIAFPFRHDFED------LSLRTRLLNGLAQQLIII 263

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
            +  K  +V  NQM  + G          G +     ++VRL   
Sbjct: 264 ANDHKSAVVLTNQMTTRFGQNQSMLVPALGES-WGHAATVRLIFH 307


>gi|71422025|ref|XP_811996.1| DNA repair protein [Trypanosoma cruzi strain CL Brener]
 gi|70876724|gb|EAN90145.1| DNA repair protein, putative [Trypanosoma cruzi]
          Length = 390

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 27/49 (55%)

Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
          V S+GS  +D  L  GG   G ++EI+GP ++GK+ L    +A     G
Sbjct: 42 VFSTGSAAIDRLLPDGGVACGTVLEIFGPPAAGKSHLVQQMVAAFAARG 90


>gi|71410643|ref|XP_807606.1| DNA repair protein [Trypanosoma cruzi strain CL Brener]
 gi|70871644|gb|EAN85755.1| DNA repair protein, putative [Trypanosoma cruzi]
          Length = 393

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 27/49 (55%)

Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
          V S+GS  +D  L  GG   G ++EI+GP ++GK+ L    +A     G
Sbjct: 42 VFSTGSAAIDRLLPDGGVACGTVLEIFGPPAAGKSHLVQQMVAAFAARG 90


>gi|254417743|ref|ZP_05031467.1| DNA repair protein RadA [Brevundimonas sp. BAL3]
 gi|196183920|gb|EDX78896.1| DNA repair protein RadA [Brevundimonas sp. BAL3]
          Length = 461

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 3/139 (2%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
             +++G    D   G GG   G  + + G    GK+TL L   A++   G   A++  E 
Sbjct: 73  PRITTGVAEFDRVCG-GGVVPGSAILLSGDPGVGKSTLLLEVAAKAALRGARIAYISGEE 131

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           A++ I AR   + L+   ++       AL      ++    DI+++DS+  L       G
Sbjct: 132 AVEQIRARAKRMGLEQAPVNLAA--ATALRDILGTLKREQFDIVIVDSIQTLWSDVHESG 189

Query: 166 DMGESLPGMQARLMSQALR 184
               +     A  M +  +
Sbjct: 190 PGSITQVRACAGEMVRLAK 208


>gi|332160214|ref|YP_004296791.1| DNA repair protein RadA [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|318607221|emb|CBY28719.1| DNA repair protein RadA [Yersinia enterocolitica subsp. palearctica
           Y11]
 gi|325664444|gb|ADZ41088.1| DNA repair protein RadA [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330860097|emb|CBX70421.1| DNA repair protein radA [Yersinia enterocolitica W22703]
          Length = 460

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G L  D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 63  VQKLSDIS--LEELPRFSTGFLEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
                   +V  E +L  +  R  +LG+    L +    + EQ   I +         ++
Sbjct: 120 -SENMKTLYVTGEESLQQVAMRAHRLGLPTAGLNMLSETSIEQICLIAE----QEQPRLM 174

Query: 150 VIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
           VIDS+  +   A+I+   G  +     A  +++  +
Sbjct: 175 VIDSIQVMH-MADIQSSPGSVAQVRETAAYLTRFAK 209


>gi|123440945|ref|YP_001004935.1| DNA repair protein RadA [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122087906|emb|CAL10694.1| DNA repair protein RadA [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 461

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G L  D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 64  VQKLSDIS--LEELPRFSTGFLEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 120

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
                   +V  E +L  +  R  +LG+    L +    + EQ   I +         ++
Sbjct: 121 -SENMKTLYVTGEESLQQVAMRAHRLGLPTAGLNMLSETSIEQICLIAE----QEQPRLM 175

Query: 150 VIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
           VIDS+  +   A+I+   G  +     A  +++  +
Sbjct: 176 VIDSIQVMH-MADIQSSPGSVAQVRETAAYLTRFAK 210


>gi|238786630|ref|ZP_04630431.1| DNA repair protein radA [Yersinia frederiksenii ATCC 33641]
 gi|238724998|gb|EEQ16637.1| DNA repair protein radA [Yersinia frederiksenii ATCC 33641]
          Length = 460

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G L  D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 63  VQKLSDIS--LEELPRFSTGFLEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
                   +V  E +L  +  R  +LG+    L +    + EQ   I +         ++
Sbjct: 120 -SENMKTLYVTGEESLQQVAMRAHRLGLPTAGLNMLSETSIEQICLIAE----QEQPRLM 174

Query: 150 VIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
           VIDS+  +   A+I+   G  +     A  +++  +
Sbjct: 175 VIDSIQVMH-MADIQSSPGSVAQVRETAAYLTRFAK 209


>gi|22127609|ref|NP_671032.1| DNA repair protein RadA [Yersinia pestis KIM 10]
 gi|45443471|ref|NP_995010.1| DNA repair protein RadA [Yersinia pestis biovar Microtus str.
           91001]
 gi|51594938|ref|YP_069129.1| DNA repair protein RadA [Yersinia pseudotuberculosis IP 32953]
 gi|108809832|ref|YP_653748.1| DNA repair protein RadA [Yersinia pestis Antiqua]
 gi|108810479|ref|YP_646246.1| DNA repair protein RadA [Yersinia pestis Nepal516]
 gi|145600446|ref|YP_001164522.1| DNA repair protein RadA [Yersinia pestis Pestoides F]
 gi|150260519|ref|ZP_01917247.1| DNA repair protein RadA [Yersinia pestis CA88-4125]
 gi|153948976|ref|YP_001402447.1| DNA repair protein RadA [Yersinia pseudotuberculosis IP 31758]
 gi|162419018|ref|YP_001605400.1| DNA repair protein RadA [Yersinia pestis Angola]
 gi|165927263|ref|ZP_02223095.1| DNA repair protein radA [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165936553|ref|ZP_02225121.1| DNA repair protein radA [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166008729|ref|ZP_02229627.1| DNA repair protein radA [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211824|ref|ZP_02237859.1| DNA repair protein radA [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167400531|ref|ZP_02306040.1| DNA repair protein radA [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167418766|ref|ZP_02310519.1| DNA repair protein radA [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167426094|ref|ZP_02317847.1| DNA repair protein radA [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167470359|ref|ZP_02335063.1| DNA repair protein radA [Yersinia pestis FV-1]
 gi|170025836|ref|YP_001722341.1| DNA repair protein RadA [Yersinia pseudotuberculosis YPIII]
 gi|186893938|ref|YP_001871050.1| DNA repair protein RadA [Yersinia pseudotuberculosis PB1/+]
 gi|218927642|ref|YP_002345517.1| DNA repair protein RadA [Yersinia pestis CO92]
 gi|229836976|ref|ZP_04457141.1| predicted repair protein [Yersinia pestis Pestoides A]
 gi|229840327|ref|ZP_04460486.1| predicted repair protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229842407|ref|ZP_04462562.1| predicted repair protein [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229900667|ref|ZP_04515791.1| predicted repair protein [Yersinia pestis Nepal516]
 gi|270487971|ref|ZP_06205045.1| DNA repair protein RadA [Yersinia pestis KIM D27]
 gi|294502540|ref|YP_003566602.1| DNA repair protein RadA [Yersinia pestis Z176003]
 gi|21960719|gb|AAM87283.1|AE013977_2 probable ATP-dependent protease [Yersinia pestis KIM 10]
 gi|45438340|gb|AAS63887.1| DNA repair protein RadA [Yersinia pestis biovar Microtus str.
           91001]
 gi|51588220|emb|CAH19827.1| putative ATP-dependent protease, DNA repair protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|108774127|gb|ABG16646.1| DNA repair protein RadA [Yersinia pestis Nepal516]
 gi|108781745|gb|ABG15803.1| DNA repair protein RadA [Yersinia pestis Antiqua]
 gi|115346253|emb|CAL19123.1| DNA repair protein RadA [Yersinia pestis CO92]
 gi|145212142|gb|ABP41549.1| DNA repair protein RadA [Yersinia pestis Pestoides F]
 gi|149289927|gb|EDM40004.1| DNA repair protein RadA [Yersinia pestis CA88-4125]
 gi|152960471|gb|ABS47932.1| DNA repair protein radA [Yersinia pseudotuberculosis IP 31758]
 gi|162351833|gb|ABX85781.1| DNA repair protein radA [Yersinia pestis Angola]
 gi|165915669|gb|EDR34278.1| DNA repair protein radA [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165920725|gb|EDR37973.1| DNA repair protein radA [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165992068|gb|EDR44369.1| DNA repair protein radA [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206570|gb|EDR51050.1| DNA repair protein radA [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962760|gb|EDR58781.1| DNA repair protein radA [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167049899|gb|EDR61307.1| DNA repair protein radA [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055017|gb|EDR64817.1| DNA repair protein radA [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169752370|gb|ACA69888.1| DNA repair protein RadA [Yersinia pseudotuberculosis YPIII]
 gi|186696964|gb|ACC87593.1| DNA repair protein RadA [Yersinia pseudotuberculosis PB1/+]
 gi|229682006|gb|EEO78098.1| predicted repair protein [Yersinia pestis Nepal516]
 gi|229690717|gb|EEO82771.1| predicted repair protein [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229696693|gb|EEO86740.1| predicted repair protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229705919|gb|EEO91928.1| predicted repair protein [Yersinia pestis Pestoides A]
 gi|262360570|gb|ACY57291.1| DNA repair protein RadA [Yersinia pestis D106004]
 gi|262364516|gb|ACY61073.1| DNA repair protein RadA [Yersinia pestis D182038]
 gi|270336475|gb|EFA47252.1| DNA repair protein RadA [Yersinia pestis KIM D27]
 gi|294352999|gb|ADE63340.1| DNA repair protein RadA [Yersinia pestis Z176003]
 gi|320016994|gb|ADW00566.1| putative repair protein [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 460

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G L  D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 63  VQKLSDIS--LEELPRFSTGFLEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
                   +V  E +L  +  R  +LG+    L +    + EQ   I +         ++
Sbjct: 120 -SENMKTLYVTGEESLQQVAMRAHRLGLPTAGLNMLSETSIEQICLIAE----QEQPRLM 174

Query: 150 VIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
           VIDS+  +   A+I+   G  +     A  +++  +
Sbjct: 175 VIDSIQVMH-MADIQSSPGSVAQVRETAAYLTRFAK 209


>gi|42522000|ref|NP_967380.1| recA protein [Bdellovibrio bacteriovorus HD100]
 gi|39574531|emb|CAE78373.1| recA protein [Bdellovibrio bacteriovorus HD100]
          Length = 240

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 62/169 (36%), Gaps = 21/169 (12%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
               +    + +G   LD  L   G P+G +  + G   +G T+L +  +          
Sbjct: 39  AEQLQPPPGLPTGVNVLDDFLLWKGVPQGDLSLLQGAPGTGATSLWIRIVQNVHSQNKWA 98

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLIS-QPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           A+++ +  L   +     ++LK LL+  +P   EQ   +   L+ S   ++I  +     
Sbjct: 99  AWINGDAQLFPAHLSSYKINLKKLLVVKEPKENEQLFWLLQELITSSLFEVIGCNL---- 154

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
                            +  L +  L+KL       K  LVF+NQ   K
Sbjct: 155 ----------------KEMFLKNHQLQKLKRLCRLHKVALVFVNQKASK 187


>gi|28377483|ref|NP_784375.1| DNA repair protein RadA [Lactobacillus plantarum WCFS1]
 gi|254555713|ref|YP_003062130.1| DNA repair protein RadA [Lactobacillus plantarum JDM1]
 gi|308179694|ref|YP_003923822.1| DNA repair protein RadA [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28270315|emb|CAD63216.1| DNA repair protein RadA [Lactobacillus plantarum WCFS1]
 gi|254044640|gb|ACT61433.1| DNA repair protein RadA [Lactobacillus plantarum JDM1]
 gi|308045185|gb|ADN97728.1| DNA repair protein RadA [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 459

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 89/255 (34%), Gaps = 35/255 (13%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           +         V +     +  LG GG   G +V I G    GK+TL L    Q  +TGG+
Sbjct: 61  KEVSLTKTPRVKTKLKEFNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSGQLAETGGS 119

Query: 98  CAFVDAEHALDSIYARKLGVDLKNL-LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
             +V  E +   +  R   + + +      P+T    +      + S   + +VIDSV  
Sbjct: 120 VLYVTGEESASQVKMRADRLAVSSEDFYLYPETD---MSNIRSTIESTHPEFVVIDSVQT 176

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPET 216
           +      +    +S  G  +++       L   I+++  I +FI     K G +      
Sbjct: 177 M------QEPDMDSAIGSVSQIREITAELLQ--IAKTNGITIFIVGHVTKGGAI------ 222

Query: 217 TTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276
             G   L+      L         D          ++ VKN+  S  +   F++      
Sbjct: 223 -AGPKILEHMVDTVLYFEG-----DLHHTY---RILRAVKNRFGSTNELGIFEM------ 267

Query: 277 SFFGELIDLGVKASI 291
              G L ++   + I
Sbjct: 268 -RTGGLYEVANPSEI 281


>gi|291336911|gb|ADD96440.1| hypothetical protein [uncultured organism MedDCM-OCT-S09-C426]
          Length = 121

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 18/110 (16%)

Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG--EGISF--FGELIDLGVKASIVDKS 295
           KD  +  G+  +V   K           + I YG  +G S     E++D  +K  ++ K+
Sbjct: 5   KDGKTPIGHWCKVSFKKTTNEKTGILASYPICYGRTDGKSIWAEYEVVDNMLKFEMIKKA 64

Query: 296 GAWFSFKGQRL--------------GQGRENSKIFLRENIEIAENIESLL 331
           GAW +   + +               QG +N + +  EN +I + + +  
Sbjct: 65  GAWVTVNEEVIEEVKKDTGEDFKQQHQGMDNLRRYFEENPKIGKYLFNKF 114


>gi|260102405|ref|ZP_05752642.1| DNA repair protein RadA [Lactobacillus helveticus DSM 20075]
 gi|260083773|gb|EEW67893.1| DNA repair protein RadA [Lactobacillus helveticus DSM 20075]
          Length = 458

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 61/179 (34%), Gaps = 14/179 (7%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGI----------EVVSSGSLGLDIALGIGGFPK 66
           E    ++Q+   K    +L  +  + E +          E + + S  L+  LG GG   
Sbjct: 34  EKKTEEVQKRSTKATASRLIQKTGLNEPVHLDKIKAEKEERIPTKSEELNRVLG-GGIVP 92

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           G +V I G    GK+TL LH ++   +          E A             ++ ++  
Sbjct: 93  GSLVLIGGDPGIGKSTLMLHIMSDLAEKYKVLYVSGEESANQIKLRADRLGVGQSNMLLY 152

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           P+T    +      +     D +VIDS+  +   +        S        + +  + 
Sbjct: 153 PETDMHDIR---EQINDVKPDFVVIDSIQTMNEPSLDSMTGSASQVREVTSELMKIAKM 208


>gi|159026758|emb|CAO86639.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 506

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 13/131 (9%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            ++SGSL LD   G GGF +  ++ + G   +GKT +    +A     G  C     E +
Sbjct: 255 RITSGSLELDRMCG-GGFFRDSVILVSGATGTGKTLMVTEFMAGGVTNGERCLIFAFEES 313

Query: 107 LDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDMLVRSGAVDIIVIDSV 154
            + ++    G  +            ++   P+T   E  L +   ++     + + +DS+
Sbjct: 314 REQLFRNATGWGVDYDRMEKEGKLKVVCRYPETTGLENHLIMMKEIIEEFQPNRVAVDSL 373

Query: 155 AALTPRAEIEG 165
           +AL   + ++G
Sbjct: 374 SALERVSNLKG 384



 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 3/92 (3%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
           +Q +  E IE + +G  G D  L  GG PKGR   I G   S KT  A   +A+  K G 
Sbjct: 2   TQNNPLELIEKLETGIPGFDF-LSEGGLPKGRATLIAGTAGSAKTVFACQFLAEGIKNGE 60

Query: 97  TCAFVDAEHALDSIYAR--KLGVDLKNLLISQ 126
              FV  E    ++       G +++    ++
Sbjct: 61  NGVFVTFEEPPHALRKNMGGFGWNIRQWEENR 92


>gi|116668768|ref|YP_829701.1| DNA repair protein RadA [Arthrobacter sp. FB24]
 gi|116608877|gb|ABK01601.1| DNA repair protein RadA [Arthrobacter sp. FB24]
          Length = 457

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 3/132 (2%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +G   LD  LG GG   G ++ + G    GK+TL L   A+  +T     ++  E + 
Sbjct: 73  LPTGVDELDRVLG-GGLVPGAVILLAGEPGVGKSTLLLDVAAKFARTAQDVLYITGEESA 131

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
             +  R     +  +  S   + E  L      V      ++V+DSV  L+         
Sbjct: 132 AQVKLRA--DRIDAVAESLYLSAETDLGQALGQVEKLEPRLLVVDSVQTLSSADVEGSAG 189

Query: 168 GESLPGMQARLM 179
           G S     A  +
Sbjct: 190 GVSQVREVAASL 201


>gi|256956977|ref|ZP_05561148.1| DNA repair protein RadA [Enterococcus faecalis DS5]
 gi|257078653|ref|ZP_05573014.1| DNA repair protein RadA [Enterococcus faecalis JH1]
 gi|294779998|ref|ZP_06745377.1| DNA repair protein RadA [Enterococcus faecalis PC1.1]
 gi|307268956|ref|ZP_07550320.1| DNA repair protein RadA [Enterococcus faecalis TX4248]
 gi|256947473|gb|EEU64105.1| DNA repair protein RadA [Enterococcus faecalis DS5]
 gi|256986683|gb|EEU73985.1| DNA repair protein RadA [Enterococcus faecalis JH1]
 gi|294452892|gb|EFG21315.1| DNA repair protein RadA [Enterococcus faecalis PC1.1]
 gi|306514764|gb|EFM83315.1| DNA repair protein RadA [Enterococcus faecalis TX4248]
 gi|315033518|gb|EFT45450.1| DNA repair protein RadA [Enterococcus faecalis TX0017]
 gi|315036341|gb|EFT48273.1| DNA repair protein RadA [Enterococcus faecalis TX0027]
          Length = 456

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 68/195 (34%), Gaps = 22/195 (11%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           I +    V +  + L+  LG GG   G +V I G    GK+TL L    Q   TGGT  +
Sbjct: 65  IPKKEPRVKTELVELNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSQQLAATGGTVLY 123

Query: 101 VDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           V  E + + I   A +LG   +   +       +        +     D ++IDS+  +T
Sbjct: 124 VSGEESAEQIKLRAERLGTVNETFYLYAETDMHE----ISRAIEKLEPDYVIIDSIQTMT 179

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
                      S        + +        ++++  I +FI     K G +        
Sbjct: 180 QPDVTSVAGSVSQVRETTAELLK--------LAKTNGIAIFIVGHVTKEGSI-------A 224

Query: 219 GGNALKFYSSVRLDI 233
           G   L+      L  
Sbjct: 225 GPRMLEHMVDTVLYF 239


>gi|296532298|ref|ZP_06895037.1| DNA repair protein RadA [Roseomonas cervicalis ATCC 49957]
 gi|296267374|gb|EFH13260.1| DNA repair protein RadA [Roseomonas cervicalis ATCC 49957]
          Length = 475

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 2/135 (1%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SG   LD  LG G  P G ++ + G    GK+T+ L   A+    G    ++  E A+D 
Sbjct: 73  SGMAELDRVLGGGFVP-GSVILVGGDPGIGKSTILLQAAARIANAGRRVLYISGEEAIDQ 131

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +  R L + L++  +    T     +I   L       +++IDS+  +   +        
Sbjct: 132 VRLRALRLGLQDSPLGLAATTS-LRDIAASLEEEKEATLVIIDSIQTVWLDSLDSAPGTV 190

Query: 170 SLPGMQARLMSQALR 184
           S     A  +++  +
Sbjct: 191 SQVRACAAELTRLAK 205


>gi|224827151|ref|ZP_03700247.1| DNA repair protein RadA [Lutiella nitroferrum 2002]
 gi|224600660|gb|EEG06847.1| DNA repair protein RadA [Lutiella nitroferrum 2002]
          Length = 453

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 9/154 (5%)

Query: 37  SQGSIFEGIEVV-----SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           SQ  +   +E V      SG   LD  LG GG  +G ++ I G    GK+TL L  +++ 
Sbjct: 55  SQVQVLSEVEAVEVPREPSGIGELDRVLG-GGLVRGAVILIGGDPGIGKSTLLLQALSEV 113

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
                   +V  E +   I  R   + +    +      E  LE     ++  A ++ VI
Sbjct: 114 GAR-RKVLYVSGEESPQQIALRASRLAVDPARVR--FLAEIRLEAILATLKQEAPEVAVI 170

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           DS+  L            S     A  +++  ++
Sbjct: 171 DSIQTLYTEQVTSAPGSVSQVRECAAQLTRMAKQ 204


>gi|167770645|ref|ZP_02442698.1| hypothetical protein ANACOL_01991 [Anaerotruncus colihominis DSM
           17241]
 gi|167667240|gb|EDS11370.1| hypothetical protein ANACOL_01991 [Anaerotruncus colihominis DSM
           17241]
          Length = 468

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 94/265 (35%), Gaps = 25/265 (9%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           +  +   +G   LD  LG GG   G ++ + G    GK+TL L         G    +V 
Sbjct: 79  DDSQRYKTGVGELDRVLG-GGIVAGSVMLLSGDPGIGKSTLLLQICQYLCG-GLKILYVS 136

Query: 103 AEHALDS--IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
            E +     + A +LGV+  NL IS     E  LE     VR  + D+++IDS+  +   
Sbjct: 137 GEESARQLKLRANRLGVESDNLYISATTDVENVLE----TVRKLSPDVVMIDSIQTMNLT 192

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
           A        +              ++   I++S  I VFI     K G + G        
Sbjct: 193 ALTSSAGSVTQIRE--------CTQVLIGIAKSAEIPVFIVGHVNKDGAIAGPKMLEHMV 244

Query: 221 NALKFYSSVRLD----IRRVGSIKDKDSITG-NQTRVKVVKNKMASPFKQVEFDIMYGEG 275
           +A+ ++   R      +R V +     +  G  +   + ++         +        G
Sbjct: 245 DAVLYFEGERHQNYRILRAVKNRYGSTNEIGVFEMGQEGLREVPNPSLMMLSGRPKNVSG 304

Query: 276 IS----FFGELIDLGVKASIVDKSG 296
                   G    L    ++V K+G
Sbjct: 305 TCVACVMEGTRPILAEVQALVSKTG 329


>gi|154151027|ref|YP_001404645.1| circadian clock protein KaiC [Candidatus Methanoregula boonei 6A8]
 gi|153999579|gb|ABS56002.1| putative circadian clock protein, KaiC [Methanoregula boonei 6A8]
          Length = 573

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/290 (16%), Positives = 86/290 (29%), Gaps = 29/290 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + +G   LD  L   GF +G  + I G   +GKT++A   I  + +    C F   E 
Sbjct: 256 ERIFTGIPRLDTMLEGKGFYRGSSILISGQAGTGKTSIAATFIDAACRRNEKCLFFIFEE 315

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +   +      + +      +    +              + +++   +    PR     
Sbjct: 316 SESQLLRNMKSIGINLEPWVKSGLLKFHAVRPTAYSLEMHLSVMLK-LIGEFKPRVVAVD 374

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
            +    P      +   L +L       +   +F +           S +   G  +++ 
Sbjct: 375 PISNLYPIGDDIQVRSMLMRLIDFAKSLQITGLFTS----------LSNDVNVGVYSVEP 424

Query: 226 YSSVRLDIRRVGSIKDKDSITG--NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
                  +     I       G  N+    +    MA   +  EF             L 
Sbjct: 425 TEMHVSSLMDAWLILKNIEGNGERNRAFSIIKVRGMAHSNQLREF------------ILS 472

Query: 284 DLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333
           D G++   V K      F   R+ Q        L +N    E IE   R+
Sbjct: 473 DKGIRLLDVYKGSEGVLFGSARIAQEGNEIDDRLCKN----EEIERKKRE 518



 Score = 40.2 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            IE V SG  GLD   G GG PKGR   + G    GKT  A+  I +     G     
Sbjct: 14  EIEKVHSGIKGLDDITG-GGLPKGRPSLVSGGPGCGKTLFAMEFIIRGIIDYGEPGVF 70


>gi|29374698|ref|NP_813850.1| DNA repair protein RadA [Enterococcus faecalis V583]
 gi|227555722|ref|ZP_03985769.1| DNA repair protein RadA [Enterococcus faecalis HH22]
 gi|256761890|ref|ZP_05502470.1| DNA repair protein RadA [Enterococcus faecalis T3]
 gi|257087872|ref|ZP_05582233.1| DNA repair protein RadA [Enterococcus faecalis D6]
 gi|257418807|ref|ZP_05595801.1| DNA repair protein radA [Enterococcus faecalis T11]
 gi|29342156|gb|AAO79922.1| DNA repair protein RadA [Enterococcus faecalis V583]
 gi|227175127|gb|EEI56099.1| DNA repair protein RadA [Enterococcus faecalis HH22]
 gi|256683141|gb|EEU22836.1| DNA repair protein RadA [Enterococcus faecalis T3]
 gi|256995902|gb|EEU83204.1| DNA repair protein RadA [Enterococcus faecalis D6]
 gi|257160635|gb|EEU90595.1| DNA repair protein radA [Enterococcus faecalis T11]
 gi|315026633|gb|EFT38565.1| DNA repair protein RadA [Enterococcus faecalis TX2137]
 gi|315168260|gb|EFU12277.1| DNA repair protein RadA [Enterococcus faecalis TX1341]
 gi|315573954|gb|EFU86145.1| DNA repair protein RadA [Enterococcus faecalis TX0309B]
 gi|315581905|gb|EFU94096.1| DNA repair protein RadA [Enterococcus faecalis TX0309A]
          Length = 456

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 68/195 (34%), Gaps = 22/195 (11%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           I +    V +  + L+  LG GG   G +V I G    GK+TL L    Q   TGGT  +
Sbjct: 65  IPKKEPRVKTELVELNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSQQLAATGGTVLY 123

Query: 101 VDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           V  E + + I   A +LG   +   +       +        +     D ++IDS+  +T
Sbjct: 124 VSGEESAEQIKLRAERLGTVNETFYLYAETDMHE----ISRAIEKLEPDYVIIDSIQTMT 179

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
                      S        + +        ++++  I +FI     K G +        
Sbjct: 180 QPDVTSVAGSVSQVRETTAELLK--------LAKTNGIAIFIVGHVTKEGSI-------A 224

Query: 219 GGNALKFYSSVRLDI 233
           G   L+      L  
Sbjct: 225 GPRMLEHMVDTVLYF 239


>gi|313902839|ref|ZP_07836236.1| DNA repair protein RadA [Thermaerobacter subterraneus DSM 13965]
 gi|313466959|gb|EFR62476.1| DNA repair protein RadA [Thermaerobacter subterraneus DSM 13965]
          Length = 465

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 50/144 (34%), Gaps = 7/144 (4%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
             + +G   LD  LG G  P G +V + G    GK+TL L         G    +V  E 
Sbjct: 77  PRLPTGMAELDRVLGGGFVP-GSVVLVGGDPGVGKSTLLLQVSQHLAARGLPVLYVTGEE 135

Query: 106 ALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           +   +   A +LG    +L +       QA E     +      + VIDS+  L      
Sbjct: 136 SAAQVRLRAERLGALAPDLAVLPTTDALQAAE----AIGRYQPALAVIDSIQTLAHPDVA 191

Query: 164 EGDMGESLPGMQARLMSQALRKLT 187
                 S       L+    ++L 
Sbjct: 192 SAPGSVSQVRESVALLMAVTKRLP 215


>gi|307129251|ref|YP_003881267.1| putative repair protein [Dickeya dadantii 3937]
 gi|306526780|gb|ADM96710.1| predicted repair protein [Dickeya dadantii 3937]
          Length = 461

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 8/145 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ +  +      +V
Sbjct: 72  LEALPRFSTGFQEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKLAEQ-MKTLYV 129

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+  +++ +    + EQ   I +         ++VIDS+  +  
Sbjct: 130 TGEESLQQVAMRAHRLGLPAQHINMLSETSIEQICLIAE----QEQPKLMVIDSIQVMHL 185

Query: 160 RAEIEGDMGESLPGMQARLMSQALR 184
                     +     A  +++  +
Sbjct: 186 ADIQSSPGSVAQVRETAAYLTRFAK 210


>gi|220930936|ref|YP_002507844.1| DNA repair protein RadA [Halothermothrix orenii H 168]
 gi|219992246|gb|ACL68849.1| DNA repair protein RadA [Halothermothrix orenii H 168]
          Length = 451

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 14/161 (8%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
             +SSG    D  LG GG   G ++ + G    GK+TL L       +  G   +V  E 
Sbjct: 63  PRLSSGIGEFDRVLG-GGVVPGSLILLGGAPGIGKSTLVLQMARHFSEKYGKVLYVSGEE 121

Query: 106 ALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           +   +  R  +LG   ++L +      +Q   +    +++   ++I+IDS+        I
Sbjct: 122 SASQLKMRAGRLGAINEDLYVLSETNFQQIYGV----IQNEKYELIIIDSIQT------I 171

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
                ES PG  ++ + +   +L     + +  +V I  + 
Sbjct: 172 FDPRIESTPGSISQ-VKEVTNRLLIQAKKLEVPIVLIGHVT 211


>gi|166366654|ref|YP_001658927.1| circadian clock protein KaiC [Microcystis aeruginosa NIES-843]
 gi|166089027|dbj|BAG03735.1| circadian clock protein KaiC homolog [Microcystis aeruginosa
           NIES-843]
          Length = 506

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 13/131 (9%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            ++SGSL LD   G GGF +  ++ + G   +GKT +    +A     G  C     E +
Sbjct: 255 RITSGSLELDRMCG-GGFFRDSVILVSGATGTGKTLMVTEFMAGGVTNGERCLIFAFEES 313

Query: 107 LDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDMLVRSGAVDIIVIDSV 154
            + ++    G  +            ++   P+T   E  L +   ++     + + +DS+
Sbjct: 314 REQLFRNATGWGVDYDRMEKEGKLKVVCRYPETTGLENHLIMMKEIIEEFQPNRVAVDSL 373

Query: 155 AALTPRAEIEG 165
           +AL   + ++G
Sbjct: 374 SALERVSNLKG 384



 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 3/92 (3%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
           +Q +  E IE + +G  G D  L  GG PKGR   I G   S KT  A   +A+  K G 
Sbjct: 2   TQNNPLELIEKLETGIPGFDF-LSEGGLPKGRATLIAGTAGSAKTVFACQFLAEGIKNGE 60

Query: 97  TCAFVDAEHA--LDSIYARKLGVDLKNLLISQ 126
              FV  E             G +++    ++
Sbjct: 61  NGVFVTFEEPPQALRKNMGGFGWNIRQWEENR 92


>gi|152964572|ref|YP_001360356.1| DNA repair protein RadA [Kineococcus radiotolerans SRS30216]
 gi|151359089|gb|ABS02092.1| DNA repair protein RadA [Kineococcus radiotolerans SRS30216]
          Length = 462

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 48/128 (37%), Gaps = 3/128 (2%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +G    D  LG GG   G +V + G    GK+TL L   ++   +G T  +V AE +  
Sbjct: 75  PTGVDEFDRVLG-GGLVPGAVVLMAGEPGVGKSTLLLDAASRVAASGRTVLYVTAEESAA 133

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +  R     +  L        E  L      V   A D++++DSV  +          G
Sbjct: 134 QVRLRA--ERIGALHARLLLASETDLATVLGHVERSAPDLLIVDSVQTVASGEVEGAAGG 191

Query: 169 ESLPGMQA 176
            S     A
Sbjct: 192 VSQVREVA 199


>gi|291225492|ref|XP_002732740.1| PREDICTED: RAD51 homolog c-like [Saccoglossus kowalevskii]
          Length = 357

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 68/227 (29%), Gaps = 45/227 (19%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCA 99
             + +    LD  LG GG P  +I E  G    GKT + +      Q         G   
Sbjct: 76  PFIITFCEELDTILG-GGVPLAKITEFCGAPGIGKTQIGIQLAVDVQIPSVFGGVEGEAI 134

Query: 100 FVDAEHAL----------------------DSIYARKLGV-----DLKNLLISQPDTGEQ 132
           ++D E +                       +      L        L  + + + +   +
Sbjct: 135 YIDTEGSFMVHRAVDIAQATVSHCISSIENNPKLKEVLNDFTVNSILSKIYVYRCNDYIE 194

Query: 133 ALE---ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
            +    +    +       +++    A   R   +         ++ RL++   + L   
Sbjct: 195 LIATVNLLPQFLTEHPRVKLIVLDSIAFHFRNNFDD------MALRTRLLNGLAQNLIRM 248

Query: 190 ISRSKCILVFINQMRMKIGVMFGSP--ETTTGGNALKFYSSVRLDIR 234
            S+ K  +V  NQM  KI              G +    S++R+ + 
Sbjct: 249 ASQHKLAVVLTNQMTTKIKSDDRGQSHVVPALGESWGHASTLRIVLF 295


>gi|146339132|ref|YP_001204180.1| hypothetical protein BRADO2086 [Bradyrhizobium sp. ORS278]
 gi|146191938|emb|CAL75943.1| conserved hypothetical protein with an ATP-binding domain; putative
           circadian oscillation regulator KaiC homolog
           [Bradyrhizobium sp. ORS278]
          Length = 506

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +L       E +  +S+GS GLD  LG GG    R+    G   +GKTT+AL  + + + 
Sbjct: 4   ELAGGTREREDLSRISTGSDGLDDILG-GGLDANRLYLYEGRPGTGKTTIALQFLLKGKS 62

Query: 94  TGGTCAFV 101
            G    ++
Sbjct: 63  LGERALYI 70



 Score = 41.8 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 13/121 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF--VDA 103
           E  SSG+  LD  LG GG  +G    + G    GK+++AL     + + G    F   D 
Sbjct: 257 EYTSSGNAELDQLLG-GGLERGTNALLIGAAGVGKSSVALSYAIAAAERGEHAVFFAFDE 315

Query: 104 EHALDSIYARKLGVDLKNLLIS----------QPDTGEQALEITDMLVRSGAVDIIVIDS 153
                   AR LG+ L+  L S             +  +   I    V      +++IDS
Sbjct: 316 GRGTVEARARTLGLPLERYLDSGLIRFQQIDPAELSPGEFGAIVRRSVEGDHARVMIIDS 375

Query: 154 V 154
           +
Sbjct: 376 L 376


>gi|317152008|ref|YP_004120056.1| DNA repair protein RadA [Desulfovibrio aespoeensis Aspo-2]
 gi|316942259|gb|ADU61310.1| DNA repair protein RadA [Desulfovibrio aespoeensis Aspo-2]
          Length = 441

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 4/130 (3%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +   +SG   LD  LG G  P G  + + G    GK+TL L       + G T  ++ 
Sbjct: 63  EDLAARTSGMESLDALLGSGLVP-GAAILLGGEPGIGKSTLLLQLAGSQARLGRTAVYLS 121

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT-PRA 161
            E +L      +                 +  +   +L      +++++DSV  L  P A
Sbjct: 122 GEESL-PQLKSRAERLGLLGPGLLAIATTRVEDALAVLDGPEPPELLIVDSVQTLASPLA 180

Query: 162 E-IEGDMGES 170
           E I G +G+ 
Sbjct: 181 EGIPGSVGQV 190


>gi|238761914|ref|ZP_04622888.1| DNA repair protein radA [Yersinia kristensenii ATCC 33638]
 gi|238700028|gb|EEP92771.1| DNA repair protein radA [Yersinia kristensenii ATCC 33638]
          Length = 460

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       + +   S+G L  D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 63  VQKLSDIS--LDELPRFSTGFLEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTMCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
                   +V  E +L  +  R  +LG+    L +    + EQ   I +         ++
Sbjct: 120 -SENMKTLYVTGEESLQQVAMRAHRLGLPTAGLNMLSETSIEQICLIAE----QEQPRLM 174

Query: 150 VIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
           VIDS+  +   A+I+   G  +     A  +++  +
Sbjct: 175 VIDSIQVMH-MADIQSSPGSVAQVRETAAYLTRFAK 209


>gi|24372807|ref|NP_716849.1| DNA repair protein RadA [Shewanella oneidensis MR-1]
 gi|24346898|gb|AAN54294.1|AE015566_9 DNA repair protein RadA [Shewanella oneidensis MR-1]
          Length = 454

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 8/147 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
              +  + S    LD  LG GG   G  + I G   +GK+TL L T+    +      +V
Sbjct: 68  LNALPRIVSHFGELDRVLG-GGIVPGSAILIGGHPGAGKSTLLLQTLCHLAEQ-MPALYV 125

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+    L +    + EQ  EI        +  +IV+DS+  +  
Sbjct: 126 TGEESLQQVAMRAHRLGLPTNKLRMLSETSVEQICEIA----LQESPKVIVVDSIQVMHM 181

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKL 186
                     S     A  +++  ++ 
Sbjct: 182 SDVASSPGSVSQVRESASYLTRFAKQH 208


>gi|209944560|gb|ACI96511.1| spindle D [Drosophila melanogaster]
          Length = 212

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 7/90 (7%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           + +G+  LD   G GG   G +VE+ G   +GKT + L      Q         G+  F+
Sbjct: 46  ILTGNKALDTHFG-GGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFI 104

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           D            L + L+     +    +
Sbjct: 105 DTRQDFHPDRLMGLALKLERQYAHRVPEFK 134


>gi|306836890|ref|ZP_07469845.1| DNA repair protein RadA [Corynebacterium accolens ATCC 49726]
 gi|304567231|gb|EFM42841.1| DNA repair protein RadA [Corynebacterium accolens ATCC 49726]
          Length = 421

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 3/116 (2%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           +  + V +G   LD  LG G  P G +V + G    GK+TL L   ++  + G T  +  
Sbjct: 35  QATKTVRTGIGELDRVLGSGIVP-GSVVLMAGEPGVGKSTLLLEVASRWAQLGRTVLYAT 93

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AE +   + AR        L  S     E  L+     V +    +I++DSV  + 
Sbjct: 94  AEESAGQVRARA--ERTGALQESLYLAAESNLDAVFGHVDAVKPGLIIVDSVQTMH 147


>gi|227502083|ref|ZP_03932132.1| DNA repair protein RadA [Corynebacterium accolens ATCC 49725]
 gi|227077142|gb|EEI15105.1| DNA repair protein RadA [Corynebacterium accolens ATCC 49725]
          Length = 421

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 3/116 (2%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           +  + V +G   LD  LG G  P G +V + G    GK+TL L   ++  + G T  +  
Sbjct: 35  QATKTVRTGIGELDRVLGSGIVP-GSVVLMAGEPGVGKSTLLLEVASRWAQLGRTVLYAT 93

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AE +   + AR        L  S     E  L+     V +    +I++DSV  + 
Sbjct: 94  AEESAGQVRARA--ERTGALQESLYLAAESNLDAVFGHVDAVKPGLIIVDSVQTMH 147


>gi|307696956|gb|ADN85944.1| disrupted meiotic cDNA 1 protein [Leymus arenarius]
 gi|307696962|gb|ADN85947.1| disrupted meiotic cDNA 1 protein [Leymus arenarius]
 gi|307696994|gb|ADN85963.1| disrupted meiotic cDNA 1 protein [Leymus karelinii]
 gi|307697002|gb|ADN85967.1| disrupted meiotic cDNA 1 protein [Leymus karelinii]
 gi|307697004|gb|ADN85968.1| disrupted meiotic cDNA 1 protein [Leymus karelinii]
 gi|307697006|gb|ADN85969.1| disrupted meiotic cDNA 1 protein [Leymus karelinii]
 gi|307697016|gb|ADN85974.1| disrupted meiotic cDNA 1 protein [Leymus racemosus subsp.
           sabulosus]
          Length = 160

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 19/172 (11%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEI 163
           +   +       L N++ ++  T E    +       +      ++++DSV AL      
Sbjct: 2   IAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIMDSVIALFR---- 57

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGN 221
               G      + + ++Q L +LT         +   NQ+    G       P+   GG+
Sbjct: 58  VDFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGH 117

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
            L   +++RL +R+           G Q   K+       P  +  F I  G
Sbjct: 118 VLAHAATIRLMLRKGK---------GEQRVCKIFDAPNL-PEGEAVFQITTG 159


>gi|79323389|ref|NP_001031438.1| RAD51B; recombinase [Arabidopsis thaliana]
 gi|83305358|sp|Q9SK02|RA51B_ARATH RecName: Full=DNA repair protein RAD51 homolog 2; Short=AtRAD51B
 gi|58430738|dbj|BAD89163.1| AtRAD51Balpha [Arabidopsis thaliana]
 gi|330253047|gb|AEC08141.1| DNA repair protein RAD51-like 2 [Arabidopsis thaliana]
          Length = 370

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 65/183 (35%), Gaps = 32/183 (17%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCAFV 101
           + +   GLD  L  GG P G + E+ GP   GK+   +                G   ++
Sbjct: 84  LPTHLKGLDDTL-CGGIPFGVLTELVGPPGIGKSQFCMKLALSASFPVAYGGLDGRVIYI 142

Query: 102 DAEHALDSIYARKLGVD---------------LKNLLISQPD---TGEQALEITDMLVRS 143
           D E    S    ++G++                  +L+ +P       ++++     +  
Sbjct: 143 DVESKFSSRRVIEMGLESFPEVFHLKGMAQEMAGRILVLRPTSLANFTESIQELKNSILQ 202

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             V ++VIDS+ AL       G         +   +   +  L S    S+  +V  NQ+
Sbjct: 203 NQVKLLVIDSMTALLSGENKPG-------AQRQPQLGWHISFLKSLAEFSRIPIVVTNQV 255

Query: 204 RMK 206
           R +
Sbjct: 256 RSQ 258


>gi|260596395|ref|YP_003208966.1| DNA repair protein RadA [Cronobacter turicensis z3032]
 gi|260215572|emb|CBA27790.1| DNA repair protein radA [Cronobacter turicensis z3032]
          Length = 460

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 10/155 (6%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 63  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 120 GEQ-MKTLYVTGEESLQQVAMRAHRLGLPTTNLNMLSETSIEQICLIAE----EEQPKLM 174

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           VIDS+  +            +     A  +++  +
Sbjct: 175 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAK 209


>gi|110349617|gb|ABG73283.1| putative DMC1 protein [Leucoagaricus sp. G216]
          Length = 91

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 12/97 (12%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           EAA   +   +  G            + + ++S+GS  +D  LG GG     I E+YG  
Sbjct: 1   EAAHKILGSSFATGI-----EVQERRKRVHIISTGSRSVDAILG-GGLMSQSITEVYGEF 54

Query: 77  SSGKTTLALHTIAQSQ------KTGGTCAFVDAEHAL 107
            +GKT +A      +Q         G  A++D E   
Sbjct: 55  RTGKTQMAHTMGVVAQLPPDLGGAAGKVAYIDTEGTF 91


>gi|296114213|ref|ZP_06832868.1| DNA repair protein RadA [Gluconacetobacter hansenii ATCC 23769]
 gi|295979289|gb|EFG86012.1| DNA repair protein RadA [Gluconacetobacter hansenii ATCC 23769]
          Length = 464

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 56/142 (39%), Gaps = 6/142 (4%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + +    LD  LG GG     +V + G    GK+TL L         G    ++  E 
Sbjct: 70  ERIETRISELDRVLG-GGMVPASVVLVGGDPGIGKSTLLLQGACALAAMGRRVMYISGEE 128

Query: 106 ALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           A+D I   AR+LG+D   L ++         +IT  L     V ++VIDS+  +      
Sbjct: 129 AVDQIRLRARRLGLDTPGLELAAAINVA---DITATLEGERDVALVVIDSIQTMWMETVE 185

Query: 164 EGDMGESLPGMQARLMSQALRK 185
                 S     A  + +  ++
Sbjct: 186 SAPGTVSQVRSSAFELIRLAKQ 207


>gi|156935504|ref|YP_001439420.1| DNA repair protein RadA [Cronobacter sakazakii ATCC BAA-894]
 gi|156533758|gb|ABU78584.1| hypothetical protein ESA_03363 [Cronobacter sakazakii ATCC BAA-894]
          Length = 424

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 10/155 (6%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 27  VQKLSDIS--LEALPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 83

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 84  AEQ-MKTLYVTGEESLQQVAMRAHRLGLPTTNLNMLSETSIEQICLIAE----EEQPKLM 138

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           VIDS+  +            +     A  +++  +
Sbjct: 139 VIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAK 173


>gi|281418344|ref|ZP_06249364.1| DNA repair protein RadA [Clostridium thermocellum JW20]
 gi|281409746|gb|EFB40004.1| DNA repair protein RadA [Clostridium thermocellum JW20]
          Length = 454

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 4/141 (2%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   +D  LG GG  KG ++ + G    GK+TL L  I    KT     +V  E +++ 
Sbjct: 71  TGIKEMDRVLG-GGIVKGSLILVGGDPGIGKSTLLLQ-ICDKIKTNAKILYVSGEESINQ 128

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           I  R   ++++N  +      E   ++   L  +   D+IVIDS+  +            
Sbjct: 129 IKLRADRLNVRNPNLL--MLSETNFKVIQALSETERPDLIVIDSIQTMFNDELPSAPGSV 186

Query: 170 SLPGMQARLMSQALRKLTSSI 190
           S        + +  + L  +I
Sbjct: 187 SQVREITSGLMRIAKTLNIAI 207


>gi|254416904|ref|ZP_05030652.1| circadian clock protein KaiC [Microcoleus chthonoplastes PCC 7420]
 gi|196176268|gb|EDX71284.1| circadian clock protein KaiC [Microcoleus chthonoplastes PCC 7420]
          Length = 519

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 71/219 (32%), Gaps = 33/219 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           MQL  + S       VSSG   LD   G GGF K  I+   G   +GKT L    I  + 
Sbjct: 253 MQLTQRSSNV----RVSSGIKTLDEMCG-GGFFKDSIILATGATGTGKTLLVSKFIHDAC 307

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
                      E +   +    L   +            +L S P++   E  L+I    
Sbjct: 308 LNEERAILFAYEESRAQLTRNGLSWGIDFEEMEEKGLLKILCSYPESAGLEDHLQIIQTQ 367

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           ++      I IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 368 IQEFKPSRIAIDSLSALA-------------RGVSNNAFRQFVIGVTGYAKQEEITGFFT 414

Query: 201 N---QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           N   Q      +      T T    +  Y  +R  + R 
Sbjct: 415 NTTDQFMGSNSITDSHISTITDTILMLQYVEIRGQMSRA 453


>gi|46445907|ref|YP_007272.1| DNA repair protein RadA [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399548|emb|CAF22997.1| probable DNA repair [Candidatus Protochlamydia amoebophila UWE25]
          Length = 456

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 72/210 (34%), Gaps = 21/210 (10%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           +    +    + +     D  LG GG   G +  + G    GK+TL L       K G  
Sbjct: 60  KEVKLQETPRIQTKIGECDRLLG-GGLVPGSLTLVGGDPGIGKSTLMLQLSYALAKQGLI 118

Query: 98  CAFVDAEHALDS--IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
             ++  E ++D   + A +LG+   NL +           +    +     D++++DS+ 
Sbjct: 119 VLYICGEESVDQTSLRANRLGIQTDNLFLLSETNFS----LIKSQIDQLNPDVLIVDSIQ 174

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRK-------LTSSISRSKCILVFINQMRMKIG 208
            +  ++EI    G      +       L K       L   +++S  I        +   
Sbjct: 175 -IVYKSEITSAPGSVTQVRETTTEFMHLAKGRGISTFLIGHVTKSGEIAGPRVLEHLVDT 233

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           V++   +          Y  +R+   R G 
Sbjct: 234 VLYFEGDKQ------HHYRMIRVVKNRFGP 257


>gi|323465873|gb|ADX69560.1| DNA repair protein radA [Lactobacillus helveticus H10]
          Length = 458

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 4/143 (2%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E  E + + S  L+  LG GG   G +V I G    GK+TL LH ++   +         
Sbjct: 70  EKEERIPTKSEELNRVLG-GGIVPGSLVLIGGDPGIGKSTLMLHIMSDLAEKYKVLYVSG 128

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E A             ++ ++  P+T    +      +     D +VIDS+  +   + 
Sbjct: 129 EESANQIKLRADRLGVGQSNMLLYPETDMHDIR---EQINDVKPDFVVIDSIQTMNEPSL 185

Query: 163 IEGDMGESLPGMQARLMSQALRK 185
                  S        + +  + 
Sbjct: 186 DSMTGSASQVREVTSELMKIAKM 208


>gi|296242926|ref|YP_003650413.1| putative circadian clock protein KaiC [Thermosphaera aggregans DSM
           11486]
 gi|296095510|gb|ADG91461.1| putative circadian clock protein, KaiC [Thermosphaera aggregans DSM
           11486]
          Length = 256

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E + +G  GLD  +  GG PKG  V   G   +GKT  ++   A     G  C +V  E
Sbjct: 1   MERLPTGVKGLDELI-EGGIPKGFTVAAVGEPGTGKTVFSIQFTATGLARGEKCIYVTTE 59

Query: 105 HALDSIYARKLGVDLK 120
            + +SI  +   +   
Sbjct: 60  ESRESIINQAARLGFD 75


>gi|241518476|ref|YP_002979104.1| putative circadian clock protein, KaiC [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862889|gb|ACS60553.1| putative circadian clock protein, KaiC [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 496

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 1/84 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E ++SG   LD   G GG  +G    + GP  SGKTT+AL  +  +   G  C   + + 
Sbjct: 246 ETIASGIGELDDLFG-GGPMRGTCTLVTGPAGSGKTTVALQYLYAACARGERCTVYEFDE 304

Query: 106 ALDSIYARKLGVDLKNLLISQPDT 129
            + ++  R     L         T
Sbjct: 305 RIGTLLTRAKAFSLDLQAFIDDGT 328



 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +S+G+ GLD+ L  GG P  R+  + G   SGKTTLAL  + +  + G    ++
Sbjct: 4   TISTGNEGLDLILA-GGLPARRLYLLEGAPGSGKTTLALQFLREGVRQGEKALYI 57


>gi|161506924|ref|YP_001576878.1| DNA repair protein RadA [Lactobacillus helveticus DPC 4571]
 gi|160347913|gb|ABX26587.1| putative DNA repair protein RadA [Lactobacillus helveticus DPC
           4571]
          Length = 458

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 4/143 (2%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E  E + + S  L+  LG GG   G +V I G    GK+TL LH ++   +         
Sbjct: 70  EKEERIPTKSEELNRVLG-GGIVPGSLVLIGGDPGIGKSTLMLHIMSDLAEKYKVLYVSG 128

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E A             ++ ++  P+T    +      +     D +VIDS+  +   + 
Sbjct: 129 EESANQIKLRADRLGVGQSNMLLYPETDMHDIR---EQINDVKPDFVVIDSIQTMNEPSL 185

Query: 163 IEGDMGESLPGMQARLMSQALRK 185
                  S        + +  + 
Sbjct: 186 DSMTGSASQVREVTSELMKIAKM 208


>gi|112148587|gb|ABI13577.1| putative ATP-dependent serine protease [Lactobacillus helveticus
           CNRZ32]
 gi|328462971|gb|EGF34779.1| DNA repair protein RadA [Lactobacillus helveticus MTCC 5463]
          Length = 458

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 4/143 (2%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E  E + + S  L+  LG GG   G +V I G    GK+TL LH ++   +         
Sbjct: 70  EKEERIPTKSEELNRVLG-GGIVPGSLVLIGGDPGIGKSTLMLHIMSDLAEKYKVLYVSG 128

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E A             ++ ++  P+T    +      +     D +VIDS+  +   + 
Sbjct: 129 EESANQIKLRADRLGVGQSNMLLYPETDMHDIR---EQINDVKPDFVVIDSIQTMNEPSL 185

Query: 163 IEGDMGESLPGMQARLMSQALRK 185
                  S        + +  + 
Sbjct: 186 DSMTGSASQVREVTSELMKIAKM 208


>gi|161504878|ref|YP_001571990.1| DNA repair protein RadA [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160866225|gb|ABX22848.1| hypothetical protein SARI_03004 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 460

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 12/160 (7%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           G   + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T
Sbjct: 59  GASKVQKLSDIS--LEALPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQT 115

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
           + +         +V  E +L  +  R  +LG+   NL +    + EQ   I +       
Sbjct: 116 LCKLAGQ-MKTLYVTGEESLQQVAMRAHRLGLPTANLNMLSETSIEQICLIAE----EEQ 170

Query: 146 VDIIVIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
             ++VIDS+  +   A+I+   G  +     A  +++  +
Sbjct: 171 PKLMVIDSIQVMH-MADIQSSPGSVAQVRETAAYLTRFAK 209


>gi|322436145|ref|YP_004218357.1| putative circadian clock protein, KaiC [Acidobacterium sp.
           MP5ACTX9]
 gi|321163872|gb|ADW69577.1| putative circadian clock protein, KaiC [Acidobacterium sp.
           MP5ACTX9]
          Length = 501

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 74/180 (41%), Gaps = 16/180 (8%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           L      F  ++ +S G   LD  +G GG P+G  + I G   +GK+ +A   +A   + 
Sbjct: 237 LVGARKTFSTVKRLSMGIPALDEMMG-GGVPEGDSLLIAGSSGTGKSLMATQFLAAGIRA 295

Query: 95  G--GTCAFVDAEHALDSIYARKLGVDLK--------NLLISQP--DTGEQALEITDMLVR 142
           G  G  A  +      +  A + G+DL+         ++  +P   + ++ ++     V+
Sbjct: 296 GEPGIAAVFEERPNEYTARASEFGLDLQTALSEGSLEVIYLRPLDLSVDEMMQEILDAVK 355

Query: 143 SGAVDIIVIDSVAA--LTPRAEIEGDMGESLPGMQARLMSQALRKLTSS-ISRSKCILVF 199
                 +VIDS+A   +        D  ESL  M   L +  +  L++  +  +   L F
Sbjct: 356 RTGAKRLVIDSLAGFEMALAPSFRTDFRESLYRMIFALTAIGITILSTLEMPETFTELSF 415



 Score = 44.4 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  + +G  GLD  LG GG P+     I G    GKTTLA   I  +        +   
Sbjct: 8   KINQLRTGVPGLDEVLG-GGLPEFSFNIIAGAPGCGKTTLAHQFIFANATPERPALYFTV 66

Query: 104 --EHALDSIYARKLGVDLKNLLISQP------------DTGEQALEITDMLVRSGAVDII 149
             E AL  +  ++         ++                 E  L      V +    I+
Sbjct: 67  LGEPALKMLRYQQQFTFFDATKLNNAVRFVNLSQDLVERGLEGVLAEISKQVEAANPSIV 126

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           V+DS      R  +  +M E         + Q    LTS 
Sbjct: 127 VVDSF-----RTVLRSEMLEGKNMAVQTFVQQLALLLTSW 161


>gi|72383335|ref|YP_292690.1| DNA repair protein RadA [Prochlorococcus marinus str. NATL2A]
 gi|72003185|gb|AAZ58987.1| DNA repair protein RadA [Prochlorococcus marinus str. NATL2A]
          Length = 459

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 56/146 (38%), Gaps = 4/146 (2%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +SSG   LD  LG GG   G +V I G    GK+TL L +  +             E
Sbjct: 72  IERISSGYKELDRVLG-GGLVPGSLVLIGGDPGIGKSTLILQSATEMAHHKSVLYVAAEE 130

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
            A           D ++ L    +T    LE+    +     ++ VIDS+ AL  ++   
Sbjct: 131 SAQQVKLRWNRIEDAESNLHLLAETD---LEMVIKELDHLKPEVAVIDSIQALHDQSLSS 187

Query: 165 GDMGESLPGMQARLMSQALRKLTSSI 190
                +     +  + Q  ++   S+
Sbjct: 188 SPGSVAQVRECSAALQQIAKRQNISL 213


>gi|120553771|ref|YP_958122.1| DNA repair protein RadA [Marinobacter aquaeolei VT8]
 gi|120323620|gb|ABM17935.1| DNA repair protein RadA [Marinobacter aquaeolei VT8]
          Length = 458

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 9/146 (6%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+G    D  LG GG  +G  V + G   +GK+TL L  + Q  +   +  +V  E +
Sbjct: 74  RISTGMQEFDRVLG-GGLVEGSAVLMGGHPGAGKSTLLLQAVCQLAEK-HSALYVTGEES 131

Query: 107 LDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           L  +   A++LG+  K+L +    + E+ +++ +         I+VIDS+  +   A+IE
Sbjct: 132 LQQVAMRAKRLGLPTKDLKMLSETSVERLMQVAEA----EKPRILVIDSIQVMHV-ADIE 186

Query: 165 GDMGESLPGMQARLMSQALRKLTSSI 190
              G      ++        K T +I
Sbjct: 187 SAPGSVSQVRESAAFLTRFAKQTGTI 212


>gi|319786590|ref|YP_004146065.1| DNA repair protein RadA [Pseudoxanthomonas suwonensis 11-1]
 gi|317465102|gb|ADV26834.1| DNA repair protein RadA [Pseudoxanthomonas suwonensis 11-1]
          Length = 466

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 54/139 (38%), Gaps = 4/139 (2%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+G   LD  LG GG  +G +V + G    GK+TL L  +A+         +V  E +
Sbjct: 84  RVSTGIGELDRVLG-GGLVEGAVVLVGGDPGIGKSTLLLQAVAKMAAQ-LPALYVTGEES 141

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           L  +  R + +DL   L +     E  +E            +IV DSV  L         
Sbjct: 142 LAQVAGRAVRLDLP--LDNLQALAETGVESILHHAAEAKPRLIVADSVQTLWTETLTAAP 199

Query: 167 MGESLPGMQARLMSQALRK 185
              S     A  + +  ++
Sbjct: 200 GSVSQVRESAARLVRYAKE 218


>gi|148273943|ref|YP_001223504.1| DNA repair protein RadA [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147831873|emb|CAN02843.1| unnamed protein product [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 463

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 8/131 (6%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM +G+  +         SG   LD  LG GG   G  + + G    GK+TL L   A+
Sbjct: 69  SIMHVGTASASHR-----PSGVGELDRVLG-GGIVPGAAILMSGEPGVGKSTLLLEVAAR 122

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +   G    +V AE ++  +  R        L  S     E  L      +   A D+++
Sbjct: 123 AAAKGAKVLYVTAEESVAQVRMRA--ERTGGLQESLMIAAETDLGTILGHIEQVAPDLLI 180

Query: 151 IDSVAALTPRA 161
           +DSV  ++  A
Sbjct: 181 VDSVQTVSSSA 191


>gi|307696982|gb|ADN85957.1| disrupted meiotic cDNA 1 protein [Leymus pseudoracemosus]
          Length = 160

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 19/172 (11%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEI 163
           +   +       L N++ ++  T E    +       +      ++++DSV AL      
Sbjct: 2   IAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR---- 57

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGN 221
               G      + + ++Q L +LT         +   NQ+    G       P+   GG+
Sbjct: 58  VDFSGRGELAERQQKLAQMLSRLTKIAKEFNVAVYITNQVIADPGGGMFITDPKKPAGGH 117

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
            L   +++RL +R+           G Q   K+       P  +  F I  G
Sbjct: 118 VLAHAATIRLMLRKGK---------GEQRVCKIFDAPNL-PEGEAVFQITTG 159


>gi|257871410|ref|ZP_05651063.1| DNA repair protein RadA [Enterococcus gallinarum EG2]
 gi|257805574|gb|EEV34396.1| DNA repair protein RadA [Enterococcus gallinarum EG2]
          Length = 456

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 65/194 (33%), Gaps = 20/194 (10%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           I +    V +    L+  LG GG   G ++ I G    GK+TL L    Q    GG   +
Sbjct: 65  IPKKEPRVQTKLAELNRVLG-GGVVPGSLILIGGDPGIGKSTLLLQVSQQLAAIGGKVLY 123

Query: 101 VDAEHALDSIYARKLG-VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           V  E + + I  R      +       P+T    +      + +   D ++IDS+  +T 
Sbjct: 124 VSGEESAEQIKMRAQRLGAIDTEFYLYPETD---MSEISKAIENLTPDYVIIDSIQTMTQ 180

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
                     S        + +        ++++  I +FI     K G +        G
Sbjct: 181 PDITSVAGSVSQVRETTAELLK--------LAKTNGIAIFIVGHVTKEGSI-------AG 225

Query: 220 GNALKFYSSVRLDI 233
              L+      L  
Sbjct: 226 PRMLEHMVDTVLYF 239


>gi|325961790|ref|YP_004239696.1| DNA repair protein RadA [Arthrobacter phenanthrenivorans Sphe3]
 gi|323467877|gb|ADX71562.1| DNA repair protein RadA [Arthrobacter phenanthrenivorans Sphe3]
          Length = 457

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 3/132 (2%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +G   LD  LG GG   G ++ + G    GK+TL L   A+  +T     +V  E + 
Sbjct: 73  LPTGVDELDRVLG-GGLVPGAVILLAGEPGVGKSTLLLDVAAKFARTAQDVLYVTGEESA 131

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
             +  R     +  +  S   + E  L      V      ++++DSV  L+         
Sbjct: 132 AQVKLRA--ERIDAVAESLYLSAETDLGQALGQVEKIEPRLLIVDSVQTLSSADVDGSAG 189

Query: 168 GESLPGMQARLM 179
           G S     A  +
Sbjct: 190 GVSQVREVAASI 201


>gi|315426533|dbj|BAJ48163.1| circadian clock protein KaiC [Candidatus Caldiarchaeum
           subterraneum]
          Length = 272

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 3/111 (2%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +S+G+  LD  LG GG  +GR   + G    GKT L+L  +        TC +V  + 
Sbjct: 21  ERLSTGNPRLDKMLG-GGLIRGRTYLVTGETGVGKTILSLQYLLNGLTQNETCVYVTIDE 79

Query: 106 ALDSIYA--RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
            ++ +      LG +    + +      +         + G      +D++
Sbjct: 80  RVEGVLRGAESLGWNFWAFMEAGRFIPLELRLYAAEARKYGKESRAFVDAI 130


>gi|312879844|ref|ZP_07739644.1| DNA repair protein RadA [Aminomonas paucivorans DSM 12260]
 gi|310783135|gb|EFQ23533.1| DNA repair protein RadA [Aminomonas paucivorans DSM 12260]
          Length = 447

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/113 (33%), Positives = 54/113 (47%), Gaps = 9/113 (7%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VSSG   LD  LG GG+  G +V + G    GK+TL L +     +TG    +V  E +
Sbjct: 65  RVSSGLEELDRVLG-GGWLAGGVVLLGGEPGVGKSTLLLQSCCAMAETGEKVLYVSGEES 123

Query: 107 LDS--IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
                + AR+LG++ +NL +   D   +ALE             +V DSV AL
Sbjct: 124 ASQLALRARRLGLETRNLSLLSTDDVTEALEEA------DPYAFVVFDSVQAL 170


>gi|28198523|ref|NP_778837.1| DNA repair protein RadA [Xylella fastidiosa Temecula1]
 gi|170729921|ref|YP_001775354.1| DNA repair protein RadA [Xylella fastidiosa M12]
 gi|182681202|ref|YP_001829362.1| DNA repair protein RadA [Xylella fastidiosa M23]
 gi|28056607|gb|AAO28486.1| DNA repair protein [Xylella fastidiosa Temecula1]
 gi|167964714|gb|ACA11724.1| DNA repair protein [Xylella fastidiosa M12]
 gi|182631312|gb|ACB92088.1| DNA repair protein RadA [Xylella fastidiosa M23]
 gi|307579648|gb|ADN63617.1| DNA repair protein RadA [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 463

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 54/139 (38%), Gaps = 4/139 (2%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+G    D  LG GG   G +V I G    GK+TL L  +A+      T  +V  E +
Sbjct: 81  RISTGIGEFDRVLG-GGLVAGAVVLIGGDPGIGKSTLLLQALARMASNLPT-LYVTGEES 138

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           L  +  R + +DL   L       E  +E       S    +IV DSV  L   A     
Sbjct: 139 LAQVAGRAVRLDLP--LEGLNALAETGIESILQHASSARPRLIVADSVQTLWTEALTAAP 196

Query: 167 MGESLPGMQARLMSQALRK 185
              S     A  + +  ++
Sbjct: 197 GSVSQVRESAAQLVRYAKE 215


>gi|71274834|ref|ZP_00651122.1| DNA repair protein RadA [Xylella fastidiosa Dixon]
 gi|71899864|ref|ZP_00682013.1| DNA repair protein RadA [Xylella fastidiosa Ann-1]
 gi|71164566|gb|EAO14280.1| DNA repair protein RadA [Xylella fastidiosa Dixon]
 gi|71730381|gb|EAO32463.1| DNA repair protein RadA [Xylella fastidiosa Ann-1]
          Length = 472

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 54/139 (38%), Gaps = 4/139 (2%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+G    D  LG GG   G +V I G    GK+TL L  +A+      T  +V  E +
Sbjct: 90  RISTGIGEFDRVLG-GGLVAGAVVLIGGDPGIGKSTLLLQALARMASNLPT-LYVTGEES 147

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           L  +  R + +DL   L       E  +E       S    +IV DSV  L   A     
Sbjct: 148 LAQVAGRAVRLDLP--LEGLNALAETGIESILQHASSARPRLIVADSVQTLWTEALTAAP 205

Query: 167 MGESLPGMQARLMSQALRK 185
              S     A  + +  ++
Sbjct: 206 GSVSQVRESAAQLVRYAKE 224


>gi|326422580|gb|EGD71975.1| ATPase, RecA superfamily [Candidatus Parvarchaeum acidophilus
           ARMAN-5_'5-way FS']
          Length = 223

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 13/124 (10%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE + SG  GLD  +  GGF KG I+ + G   +GK+  ++  I +  K      +V  E
Sbjct: 7   IERIPSGIYGLDSKI-EGGFEKGSIITVIGGPGAGKSIFSMQFIYEGLKRKEKTLYVSFE 65

Query: 105 HALDSIYARKLGVDLKN----------LLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
            +   +    L ++L            +L + P   E    I   +++S ++  +VIDS+
Sbjct: 66  ESEADLIRDMLAIELDPSEYIKNESLTILFASPINFEYLSII--DVIKSKSISRVVIDSL 123

Query: 155 AALT 158
           +A+ 
Sbjct: 124 SAIY 127


>gi|218961024|ref|YP_001740799.1| DNA repair protein radA homolog (DNA repair protein sms homolog);
           putative ATP-dependent protease, with nucleoside triP
           hydrolase and multiheme cytochrome domains [Candidatus
           Cloacamonas acidaminovorans]
 gi|167729681|emb|CAO80593.1| DNA repair protein radA homolog (DNA repair protein sms homolog);
           putative ATP-dependent protease, with nucleoside triP
           hydrolase and multiheme cytochrome domains [Candidatus
           Cloacamonas acidaminovorans]
          Length = 444

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 7/109 (6%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G    D+ LG GG  KG ++ I G    GK+TL L       K      +   E + + 
Sbjct: 68  TGIKEFDLVLG-GGIVKGMLILIGGEPGIGKSTLMLQLSEWMGKQNKKTLYCSGEESAEQ 126

Query: 110 IYARKLGVDL--KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
           I  R   + +  +N+ +   +  E  +E     +     D+ ++DS+ +
Sbjct: 127 IRLRSKHLKVTSENIYLLCTNNAEHIIE----AIEDNKPDLAIVDSIQS 171


>gi|90412510|ref|ZP_01220513.1| hypothetical ATP-dependent protease [Photobacterium profundum 3TCK]
 gi|90326547|gb|EAS42953.1| hypothetical ATP-dependent protease [Photobacterium profundum 3TCK]
          Length = 459

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 3/142 (2%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + +   SSG    D  LG GG   G ++ + G   +GK+TL L +I        +  +V 
Sbjct: 70  KDLPRFSSGIGEFDRVLG-GGIVPGSVLLLCGDPGAGKSTLLLQSIGAVAAI-KSALYVS 127

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E ++  I  R   +  +N+            ++  + V     + ++IDS+  +T    
Sbjct: 128 GEESIHQISQRAERLKTQNIDKINVVAETSVEQVLHL-VTQLKAEFVIIDSIQTMTVAHN 186

Query: 163 IEGDMGESLPGMQARLMSQALR 184
                  S     A  +++  +
Sbjct: 187 DSAAGSPSQVKESAAALTRFAK 208


>gi|241518449|ref|YP_002979077.1| Non-specific serine/threonine protein kinase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240862862|gb|ACS60526.1| Non-specific serine/threonine protein kinase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 480

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 67/333 (20%), Positives = 114/333 (34%), Gaps = 46/333 (13%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +   +VS+G  GLD  L  GG P   +  + G   SGKTT AL  +    + G +C +V
Sbjct: 4   RKRTSIVSTGIGGLDEIL-RGGLPASNLYMLQGAPGSGKTTAALQFLRAGVEAGESCIYV 62

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
                   + A  +         +      + L  +  +  +    I +   +     R 
Sbjct: 63  TLSQTAAELEAIAVS-----HGWTLDGIRVEELSTSGAVNEADDQSIFLTTDLRLDETRK 117

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
            IE  + +  P          +R +T    R +  L+       K  V+    +T T GN
Sbjct: 118 AIEAAIEKHKPRRLVYDSLLEIRLITGDSPRFRRELIGFKSFLAKQDVVALLLDTQTAGN 177

Query: 222 -------------------ALKFYSSVR----LDIRRVGSIKDKDSITGNQTRVKVVKNK 258
                              +L+ Y  VR    +   R   + D       +    VV   
Sbjct: 178 DRSGEEVEGLAHGVIRFDKSLEEYGGVRRRIEVSKMRSVPVADGYHDMAIREGEGVVVFP 237

Query: 259 MASPFKQVEFDIM--YGEGISFFGELIDLGVKAS----IVDKSGAWFS-----FKGQRLG 307
             +P    E         G++   E+   G +A     ++ +SG   S     +    L 
Sbjct: 238 RITPSTAPEIAKPQLIKSGVAELDEMFGGGQEAGTTTLVIGQSGTGKSTMSSLYATAALE 297

Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340
           +G EN  +FL E     E +E+  R++ GL  +
Sbjct: 298 RG-ENVALFLFE-----ERLETFFRRSEGLGME 324


>gi|54307840|ref|YP_128860.1| DNA repair protein RadA [Photobacterium profundum SS9]
 gi|46912266|emb|CAG19058.1| hypothetical ATP-dependent protease [Photobacterium profundum SS9]
          Length = 459

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 3/142 (2%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + +   SSG    D  LG GG   G ++ + G   +GK+TL L +I        +  +V 
Sbjct: 70  KDLPRFSSGIGEFDRVLG-GGIVPGSVLLLCGDPGAGKSTLLLQSIGAVAAI-KSALYVS 127

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E ++  I  R   +  +N+            ++  + V     + ++IDS+  +T    
Sbjct: 128 GEESIHQISQRAERLKTQNIDKINVVAETSVEQVLHL-VTQLKAEFVIIDSIQTMTVAHN 186

Query: 163 IEGDMGESLPGMQARLMSQALR 184
                  S     A  +++  +
Sbjct: 187 DSAAGSPSQVKESAAALTRFAK 208


>gi|109897605|ref|YP_660860.1| DNA repair protein RadA [Pseudoalteromonas atlantica T6c]
 gi|109699886|gb|ABG39806.1| DNA repair protein RadA [Pseudoalteromonas atlantica T6c]
          Length = 454

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 96/266 (36%), Gaps = 19/266 (7%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEV-----VSSGSLGLDIALGIGGFPKGRIVEIY 73
           A SQ +R   +G   Q G++      I+V      +S    LD  LG GG   G  + I 
Sbjct: 41  ARSQPERNL-RGYAGQTGAKIETLNSIDVAELPRFTSSFSELDRVLG-GGIVPGSAILIG 98

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           G   +GK+TL L  + Q      T  +V  E +L  +  R   ++L +  ++     E +
Sbjct: 99  GSPGAGKSTLLLQVMCQLAAQ-RTALYVTGEESLQQVAMRAQRLNLPSDKLN--MLAETS 155

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           +E    L  +    I+VIDS+  +            S     A  +++  ++   ++   
Sbjct: 156 VETICELALTLNPKIMVIDSIQVMHVADVASAPGSVSQVRESAAYLTRFAKQHHIAMLLV 215

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD---------KDS 244
             +    +    K+            G +   Y ++R    R G++ +            
Sbjct: 216 GHVTKDGSLAGPKVLEHCIDCSMMLEGESDSRYRTLRSQKNRFGAVNELGVFGMTERGLK 275

Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDI 270
              N + + + + +  SP   V    
Sbjct: 276 EVSNPSAIFLSRGEEQSPGSIVMVVW 301


>gi|311281038|ref|YP_003943269.1| DNA repair protein RadA [Enterobacter cloacae SCF1]
 gi|308750233|gb|ADO49985.1| DNA repair protein RadA [Enterobacter cloacae SCF1]
          Length = 461

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 12/156 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 63  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 120 AEQ-MKTLYVTGEESLQQVAMRAHRLGLPTGNLNMLSETSIEQICLIAE----EEQPRLM 174

Query: 150 VIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
           VIDS+  +   A+I+   G  +     A  +++  +
Sbjct: 175 VIDSIQVMH-MADIQSSPGSVAQVRETAAYLTRFAK 209


>gi|307696952|gb|ADN85942.1| disrupted meiotic cDNA 1 protein [Leymus triticoides]
 gi|307696954|gb|ADN85943.1| disrupted meiotic cDNA 1 protein [Leymus triticoides]
 gi|307696958|gb|ADN85945.1| disrupted meiotic cDNA 1 protein [Leymus arenarius]
 gi|307696960|gb|ADN85946.1| disrupted meiotic cDNA 1 protein [Leymus arenarius]
 gi|307696964|gb|ADN85948.1| disrupted meiotic cDNA 1 protein [Leymus cinereus]
 gi|307696968|gb|ADN85950.1| disrupted meiotic cDNA 1 protein [Leymus cinereus]
 gi|307696970|gb|ADN85951.1| disrupted meiotic cDNA 1 protein [Leymus cinereus]
 gi|307696972|gb|ADN85952.1| disrupted meiotic cDNA 1 protein [Leymus cinereus]
 gi|307696974|gb|ADN85953.1| disrupted meiotic cDNA 1 protein [Leymus cinereus]
 gi|307696978|gb|ADN85955.1| disrupted meiotic cDNA 1 protein [Leymus cinereus]
 gi|307696980|gb|ADN85956.1| disrupted meiotic cDNA 1 protein [Leymus pseudoracemosus]
 gi|307696992|gb|ADN85962.1| disrupted meiotic cDNA 1 protein [Leymus karelinii]
 gi|307696996|gb|ADN85964.1| disrupted meiotic cDNA 1 protein [Leymus karelinii]
 gi|307697000|gb|ADN85966.1| disrupted meiotic cDNA 1 protein [Leymus karelinii]
 gi|307697008|gb|ADN85970.1| disrupted meiotic cDNA 1 protein [Leymus chinensis]
 gi|307697010|gb|ADN85971.1| disrupted meiotic cDNA 1 protein [Leymus chinensis]
 gi|307697014|gb|ADN85973.1| disrupted meiotic cDNA 1 protein [Leymus chinensis]
 gi|307697018|gb|ADN85975.1| disrupted meiotic cDNA 1 protein [Leymus racemosus subsp.
           sabulosus]
 gi|307697020|gb|ADN85976.1| disrupted meiotic cDNA 1 protein [Leymus paboanus]
 gi|307697022|gb|ADN85977.1| disrupted meiotic cDNA 1 protein [Leymus paboanus]
 gi|307697026|gb|ADN85979.1| disrupted meiotic cDNA 1 protein [Leymus paboanus]
 gi|307697028|gb|ADN85980.1| disrupted meiotic cDNA 1 protein [Leymus paboanus]
 gi|307697030|gb|ADN85981.1| disrupted meiotic cDNA 1 protein [Leymus paboanus]
 gi|307697032|gb|ADN85982.1| disrupted meiotic cDNA 1 protein [Leymus paboanus]
 gi|307697036|gb|ADN85984.1| disrupted meiotic cDNA 1 protein [Leymus angustus]
 gi|307697038|gb|ADN85985.1| disrupted meiotic cDNA 1 protein [Leymus angustus]
 gi|307697040|gb|ADN85986.1| disrupted meiotic cDNA 1 protein [Leymus angustus]
 gi|307697042|gb|ADN85987.1| disrupted meiotic cDNA 1 protein [Leymus angustus]
 gi|307697046|gb|ADN85989.1| disrupted meiotic cDNA 1 protein [Leymus angustus]
 gi|307697048|gb|ADN85990.1| disrupted meiotic cDNA 1 protein [Leymus angustus]
 gi|307697050|gb|ADN85991.1| disrupted meiotic cDNA 1 protein [Leymus angustus]
 gi|307697052|gb|ADN85992.1| disrupted meiotic cDNA 1 protein [Leymus innovatus]
 gi|307697054|gb|ADN85993.1| disrupted meiotic cDNA 1 protein [Leymus innovatus]
 gi|307697058|gb|ADN85995.1| disrupted meiotic cDNA 1 protein [Leymus erianthus]
 gi|307697060|gb|ADN85996.1| disrupted meiotic cDNA 1 protein [Leymus erianthus]
 gi|307697064|gb|ADN85998.1| disrupted meiotic cDNA 1 protein [Leymus erianthus]
 gi|307697068|gb|ADN86000.1| disrupted meiotic cDNA 1 protein [Psathyrostachys huashanica]
 gi|307697070|gb|ADN86001.1| disrupted meiotic cDNA 1 protein [Psathyrostachys lanuginosa]
 gi|307697072|gb|ADN86002.1| disrupted meiotic cDNA 1 protein [Brachypodium distachyon]
          Length = 160

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 19/172 (11%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEI 163
           +   +       L N++ ++  T E    +       +      ++++DSV AL      
Sbjct: 2   IAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR---- 57

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGN 221
               G      + + ++Q L +LT         +   NQ+    G       P+   GG+
Sbjct: 58  VDFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGH 117

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
            L   +++RL +R+           G Q   K+       P  +  F I  G
Sbjct: 118 VLAHAATIRLMLRKGK---------GEQRVCKIFDAPNL-PEGEAVFQITTG 159


>gi|283788426|ref|YP_003368291.1| DNA repair protein [Citrobacter rodentium ICC168]
 gi|282951880|emb|CBG91596.1| DNA repair protein [Citrobacter rodentium ICC168]
          Length = 460

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 10/146 (6%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ +  +      +V
Sbjct: 71  LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKLAEK-MKTLYV 128

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+   NL +    + EQ   I +         ++VIDS+  +  
Sbjct: 129 TGEESLQQVAMRAHRLGLPTGNLNMLSETSIEQICLIAE----EEQPKLMVIDSIQVMH- 183

Query: 160 RAEIEGDMGE-SLPGMQARLMSQALR 184
            A+I+   G  +     A  +++  +
Sbjct: 184 MADIQSSPGSVAQVRETAAYLTRFAK 209


>gi|124266727|ref|YP_001020731.1| SOS cell division inhibitor SulA [Methylibium petroleiphilum PM1]
 gi|124259502|gb|ABM94496.1| SOS cell division inhibitor SulA [Methylibium petroleiphilum PM1]
          Length = 262

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 3/116 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA---LHTIAQSQKTGGT 97
               +  +S+G   LD  L  GG+P   + E+    +SG+  L    L  + Q Q+    
Sbjct: 35  ARPPLPTLSTGWPALDEQLPGGGWPASGLTELLAAPASGELALLVPWLRKLGQRQEAARE 94

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
             ++           + LG+D   LL   P T   A    +  VR+G+   ++  S
Sbjct: 95  TVWISPPGWPCLSALQALGLDGSRLLCLAPQTAIDAAWAAEQAVRAGSCAAVLWWS 150


>gi|110680425|ref|YP_683432.1| DNA repair protein RadA [Roseobacter denitrificans OCh 114]
 gi|109456541|gb|ABG32746.1| DNA repair protein RadA [Roseobacter denitrificans OCh 114]
          Length = 453

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 57/159 (35%), Gaps = 4/159 (2%)

Query: 28  GK-GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           GK GA ++L S  +        + G   LD  LG GG      + + G    GK+TL L 
Sbjct: 48  GKRGASVKLTSLSTEEAPPPRTTCGIKELDRVLG-GGLVAASAILVGGDPGIGKSTLLLQ 106

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
             AQ  ++G    +V  E A   +  R   + L +  +         L      + +   
Sbjct: 107 AAAQFARSGLKTIYVSGEEASAQVRMRAQRLGLTDAPVQLAAETN--LRDILTTLEAEKP 164

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
            + +IDS+  +            S     A  ++   ++
Sbjct: 165 QLAIIDSIQTMWADNVDSAPGSVSQVRAAAHELTSFAKR 203


>gi|255635337|gb|ACU18022.1| unknown [Glycine max]
          Length = 325

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 78/224 (34%), Gaps = 38/224 (16%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA-LHTIAQSQKTGGT 97
                   V+S+G  G+D  L  GG  +G++ E+ G  SSGKT    L       K   +
Sbjct: 80  EDAQRNKHVLSTGCEGIDALL-RGGLREGQLTELVGSSSSGKTQACLLSASTVVAKHKSS 138

Query: 98  CAFVDAEHALDSIY-----------------ARKLGVDLKNLLISQPDTGEQALEITDM- 139
             ++D  ++                         L   L  ++        Q  ++    
Sbjct: 139 VIYLDTGNSFSPQRIAHFVGQSSGHIFGNQADHMLKKVLDRIICYSVFDVYQMFDVLHQL 198

Query: 140 --------LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
                   +  +  V ++++DS+++L     I   +G S P   A ++S     L     
Sbjct: 199 KINLRSEIVKSNQHVRLLIVDSISSL-----ITPILGGSGPQGHALMISAGFL-LKKLAH 252

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
                ++  N +   +G   G  +T  G +  K    VR+ + R
Sbjct: 253 EHNIAVLVTNHV---VGGDDGISKTAMGES-WKSVPHVRILLSR 292


>gi|147921245|ref|YP_684941.1| hypothetical protein RCIX115 [uncultured methanogenic archaeon
           RC-I]
 gi|110620337|emb|CAJ35615.1| conserved hypothetical protein [uncultured methanogenic archaeon
           RC-I]
          Length = 231

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++++S+G  GLD  L  GGFP+  ++ + G   +GK+TLAL  +    K G    ++  E
Sbjct: 1   MKLLSTGVQGLDELL-QGGFPEKHMIVVVGGMGTGKSTLALQFLVNGLKNGEKSVYMSLE 59

Query: 105 --HALDSIYARKLGVDLKNLLISQ 126
              +     A   G DL+  + + 
Sbjct: 60  ERESEIVESAEGYGWDLQTYIDNN 83


>gi|146277111|ref|YP_001167270.1| DNA repair protein RadA [Rhodobacter sphaeroides ATCC 17025]
 gi|145555352|gb|ABP69965.1| DNA repair protein RadA [Rhodobacter sphaeroides ATCC 17025]
          Length = 452

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 53/162 (32%), Gaps = 4/162 (2%)

Query: 25  RVYG-KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           +  G KG  + L    +        SSG   LD  LG G  P   I+ + G    GK+TL
Sbjct: 44  KALGSKGRTIALTDLATEEAPPPRTSSGIDELDRVLGGGLVPASAIL-VGGDPGIGKSTL 102

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            L   A     G  C ++  E A   +  R   + L           E  L      + +
Sbjct: 103 LLQAAASFANGGVKCLYISGEEAPAQVRMRAQRLGLGQ--APVALGAETNLRDILTTLDA 160

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
               + +IDS+  +            +     A  +    ++
Sbjct: 161 ERPALAIIDSIQTMWLDNVESAPGSVAQVRASAHELVTFAKR 202


>gi|27696723|gb|AAH43073.1| Xrcc3 protein [Mus musculus]
          Length = 215

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 50/130 (38%), Gaps = 7/130 (5%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-- 94
            + S  E  + +S G   LD  LG GG P   I  + G  S+GKT LAL      Q    
Sbjct: 71  QKESFPEQHQRLSLGCPVLDQFLG-GGLPLEGITGLAGCSSAGKTQLALQLCLAVQFPRQ 129

Query: 95  -GGT---CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            GG      ++  E A  S    +L    + L    P+   + +  ++ +    A D+  
Sbjct: 130 YGGLEAGAVYICTEDAFPSKRLWQLIAQQRRLRTDAPEELIEKIRFSNHIFIEHAADVPH 189

Query: 151 IDSVAALTPR 160
               +   P+
Sbjct: 190 FVVSSTFRPQ 199


>gi|326804276|ref|YP_004322094.1| DNA repair protein RadA [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650375|gb|AEA00558.1| DNA repair protein RadA [Aerococcus urinae ACS-120-V-Col10a]
          Length = 462

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 66/200 (33%), Gaps = 20/200 (10%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +L       E    V +G    +  LG GG   G +  I G    GK+TL L    Q   
Sbjct: 61  RLKEVSQAEEK--RVKTGLGEFNRVLG-GGVVPGSLALIGGDPGIGKSTLLLQVAKQLSD 117

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            GG   +V  E +L  I  R   +  ++            L I    +     D +VIDS
Sbjct: 118 NGGRVLYVSGEESLHQIKMRADRLGYQD-ADFFVYAETDLLAI-QAAISDTQADFVVIDS 175

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           +  +                     + +A  +L   I++S  I +F+     K G +   
Sbjct: 176 IQTMV-------HPNNESLAGSVSQVREATGELMH-IAKSSGIAIFVVGHVTKEGNI--- 224

Query: 214 PETTTGGNALKFYSSVRLDI 233
                G   L+      L +
Sbjct: 225 ----AGPRILEHMVDTVLYL 240


>gi|307696976|gb|ADN85954.1| disrupted meiotic cDNA 1 protein [Leymus cinereus]
          Length = 160

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 19/172 (11%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEI 163
           +   +       L N++ ++  T E    +       +      ++++DSV AL      
Sbjct: 2   IAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR---- 57

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGN 221
               G      + + ++Q L +LT         +   NQ+    G       P+   GG+
Sbjct: 58  VDFSGRGELAERQQELAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGH 117

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
            L   +++RL +R+           G Q   K+       P  +  F I  G
Sbjct: 118 VLAHAATIRLMLRKGK---------GEQRVCKIFDAPNL-PEGEAVFQITTG 159


>gi|289191979|ref|YP_003457920.1| DNA repair and recombination protein RadB [Methanocaldococcus sp.
           FS406-22]
 gi|288938429|gb|ADC69184.1| DNA repair and recombination protein RadB [Methanocaldococcus sp.
           FS406-22]
          Length = 212

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 78/187 (41%), Gaps = 18/187 (9%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD--- 118
           G   KG I +IYG    GKT + +   + +    G   ++D E  L     +++  D   
Sbjct: 8   GNVEKGIITQIYGLPGVGKTNICI-INSINAIDFGKVIYIDTEGGLSIERIKQIAPDNYQ 66

Query: 119 --LKNLLISQPDTGEQALEITDMLVR--SGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
             L++++I       +  +I    +   +    +IV+D++ +L  R E+  +  +++   
Sbjct: 67  KVLESMIIYNVFDFYEQDKIIQKELPLIANNASLIVVDNITSLY-RLELSDEANKNIM-- 123

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY--SSVRLD 232
             +++   +R L      +   ++  NQ+R  +          +GG  L+++    VRL+
Sbjct: 124 LNKMLGNQVRTLLKLAKTNNLAVIITNQVRETVN-----GFEASGGRLLEYWSKCIVRLE 178

Query: 233 IRRVGSI 239
                 +
Sbjct: 179 KLNGDRL 185


>gi|238752645|ref|ZP_04614117.1| DNA repair protein radA [Yersinia rohdei ATCC 43380]
 gi|238709159|gb|EEQ01405.1| DNA repair protein radA [Yersinia rohdei ATCC 43380]
          Length = 461

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       + +   S+G L  D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 64  VQKLSDIS--LDELPRFSTGFLEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 120

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
                   +V  E +L  +  R  +LG+    L +    + EQ   I +         ++
Sbjct: 121 -SENMKTLYVTGEESLQQVAMRAHRLGLPTAGLNMLSETSIEQICLIAE----QEQPKLM 175

Query: 150 VIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
           VIDS+  +   A+I+   G  +     A  +++  +
Sbjct: 176 VIDSIQVMH-MADIQSSPGSVAQVRETAAYLTRFAK 210


>gi|197286353|ref|YP_002152225.1| DNA repair protein RadA [Proteus mirabilis HI4320]
 gi|227357405|ref|ZP_03841760.1| DNA repair protein [Proteus mirabilis ATCC 29906]
 gi|194683840|emb|CAR44954.1| DNA repair protein [Proteus mirabilis HI4320]
 gi|227162410|gb|EEI47407.1| DNA repair protein [Proteus mirabilis ATCC 29906]
          Length = 463

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 15/167 (8%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ +         +V
Sbjct: 71  LEALPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTMCRLAAE-MKTLYV 128

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+    L +    + EQ   I           ++VIDS+  +  
Sbjct: 129 TGEESLQQVAMRAHRLGLPTTELNMLSETSIEQICLIAA----QEQPKLMVIDSIQVMH- 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            A+I+   G          + +    LT     +   ++ +  +   
Sbjct: 184 MADIQSSPG------SVAQVRETAAYLTRFAKTNDIAIIMVGHVTKD 224


>gi|222056781|ref|YP_002539143.1| DNA repair protein RadA [Geobacter sp. FRC-32]
 gi|221566070|gb|ACM22042.1| DNA repair protein RadA [Geobacter sp. FRC-32]
          Length = 448

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 62/186 (33%), Gaps = 19/186 (10%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +G    D  LG GG   G +V I G    GK+TL L  +    KTG T  +V  E + 
Sbjct: 67  LPTGISEFDRVLG-GGLVAGSLVLIGGDPGIGKSTLLLQAMNHVAKTG-TVLYVSGEESA 124

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
             I  R   + +    +      E ALE     +       IVIDS+  +          
Sbjct: 125 RQIKLRGARMGVNAPGLYV--LAETALENILAHIARMQPKAIVIDSIQTIFTSGLESAPG 182

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
             S     A  +          +++   I VFI     K G +        G   L+   
Sbjct: 183 SVSQVRETAGRLM--------IMAKGSGIPVFIVGHVTKDGAI-------AGPRVLEHLV 227

Query: 228 SVRLDI 233
              L  
Sbjct: 228 DTVLYF 233


>gi|125974290|ref|YP_001038200.1| DNA repair protein RadA [Clostridium thermocellum ATCC 27405]
 gi|125714515|gb|ABN53007.1| DNA repair protein RadA [Clostridium thermocellum ATCC 27405]
          Length = 454

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 4/141 (2%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   +D  LG GG  KG ++ + G    GK+TL L  I    KT     +V  E ++  
Sbjct: 71  TGIKEMDRVLG-GGIVKGSLILVGGDPGIGKSTLLLQ-ICDKIKTNAKILYVSGEESIKQ 128

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           I  R   ++++N  +      E   ++   L  +   D+IVIDS+  +            
Sbjct: 129 IKLRADRLNVRNPNLL--MLSETNFKVIQALSETERPDLIVIDSIQTMFNDELPSAPGSV 186

Query: 170 SLPGMQARLMSQALRKLTSSI 190
           S        + +  + L  +I
Sbjct: 187 SQVREITSGLMRIAKTLNIAI 207


>gi|172035338|ref|YP_001801839.1| circadian clock protein KaiC [Cyanothece sp. ATCC 51142]
 gi|171696792|gb|ACB49773.1| circadian clock protein [Cyanothece sp. ATCC 51142]
          Length = 519

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 81/254 (31%), Gaps = 37/254 (14%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       +SSG   LD   G GGF K  I+   G   +GKT L    + +  
Sbjct: 253 MRLTQRSSNA----RISSGVETLDEMCG-GGFFKDSIILATGATGTGKTLLVSKFLEEGC 307

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
           + G        E +   +        +            LL + P++   E  L+I    
Sbjct: 308 RQGERAILFAYEESRAQLSRNAFSWGIDFEEMERKGLLKLLCTYPESAGLEDHLQIIKSE 367

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 368 ISEFKPSRIAIDSLSALA-------------RGVTNNAFRQFVIGVTGYAKQEEITGFFT 414

Query: 201 N---QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV---GSIKDKDSITGNQTRVKV 254
           N   Q      +      T T    +  Y  +R ++ R      ++      G +  +  
Sbjct: 415 NTTDQFMGAHSITESHISTITDTILMLQYVEIRGEMSRAINVFKMRGSWHDKGIREYMIN 474

Query: 255 VKNK-MASPFKQVE 267
                +   F+  E
Sbjct: 475 QDGPIIQDSFRNYE 488



 Score = 40.2 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 6/92 (6%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ----SQK 93
           Q    +G+  + +   GLD  +  GG P GR     G   +GKT LA+  +         
Sbjct: 12  QPLAPKGVRKIRTMIEGLDE-ITHGGLPLGRTTLASGTSGTGKTLLAVQFLYHGIKYFDY 70

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
            G    F ++ H +    A   G DL+ L+  
Sbjct: 71  PGLFVTFEESPHDII-ENAYSFGWDLQKLIDE 101


>gi|326383081|ref|ZP_08204770.1| DNA repair protein RadA [Gordonia neofelifaecis NRRL B-59395]
 gi|326198217|gb|EGD55402.1| DNA repair protein RadA [Gordonia neofelifaecis NRRL B-59395]
          Length = 456

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 52/161 (32%), Gaps = 10/161 (6%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
               +G    D  LG G  P G ++ + G    GK+TL L T+      G T  +V  E 
Sbjct: 62  SSCPTGIAEFDRVLGRGVVP-GSVILLAGEPGVGKSTLLLETVKHWAAQGKTALYVTGEE 120

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +   +  R        +  +     E  L      V + A  ++++DSV  +        
Sbjct: 121 SAGQVRLRA--ERTAAVHENIYLASETDLATVLGHVEAVAPTLLIVDSVQTMV------- 171

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
             G          +      L S    S   ++ +  +   
Sbjct: 172 ATGTDGVTGGVTQIRAVTTALVSLAKTSGIAVILVGHVTKD 212


>gi|255581709|ref|XP_002531657.1| X-ray repair cross complementing protein 3, xrcc3, putative
           [Ricinus communis]
 gi|223528715|gb|EEF30727.1| X-ray repair cross complementing protein 3, xrcc3, putative
           [Ricinus communis]
          Length = 301

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 42/140 (30%), Gaps = 9/140 (6%)

Query: 46  EVVSS-----GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGGT 97
           + + +     G   LD  L  GG P   I EI     +GKT L L     +Q     GG 
Sbjct: 9   QPIPTQKCTLGCPILDRCLN-GGIPCNSITEIVAESGTGKTQLCLQLSLYAQLPLSLGGL 67

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            A     H       R+L     +     P           +       D I + SV + 
Sbjct: 68  SASSLYLHTEFPFPFRRLHQLSHSFQSQHPQIFINNNNNDTINNYDNPCDNIFVHSVRSA 127

Query: 158 TPRAEIEGDMGESLPGMQAR 177
               +I   +   L   +  
Sbjct: 128 DYLFDIMPKIESFLVYSKTH 147


>gi|289208994|ref|YP_003461060.1| SOS cell division inhibitor SulA [Thioalkalivibrio sp. K90mix]
 gi|288944625|gb|ADC72324.1| SOS cell division inhibitor SulA [Thioalkalivibrio sp. K90mix]
          Length = 207

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 2/117 (1%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG-PESSGKTTLALHTIAQSQKT 94
           G          V  SG   LD ALG GG+P+G+++E+ G P   G+T L +  +A   + 
Sbjct: 16  GRSAVPAADAPVWPSGHPALDRALG-GGWPRGQLIELLGAPFGCGETRLLVPLLAACGRE 74

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           G   A +           R LG+  + +L+ + +     L   +  +R  A   ++ 
Sbjct: 75  GYWVALLAPPATPWLPGWRPLGIPPERVLLIRTEHDRDTLWAGEQCLRDPAFGALLA 131


>gi|118588135|ref|ZP_01545545.1| predicted repair protein [Stappia aggregata IAM 12614]
 gi|118439757|gb|EAV46388.1| predicted repair protein [Stappia aggregata IAM 12614]
          Length = 449

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 58/157 (36%), Gaps = 2/157 (1%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG ++ L       +    + +    LD   G GGF +G  + + G    GK+TL +   
Sbjct: 38  KGRVIPLVGLSGDAKEAPRIQTKVPELDRVTG-GGFVRGSALLVGGDPGIGKSTLLIQAA 96

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           AQ    G    ++  E A+  +  R   + L    ++         +I   L    A  +
Sbjct: 97  AQLANLGHRTVYISGEEAIGQVRLRAERLGLAQAPVALAA-ETSVEDILATLEADTAPAL 155

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           +++DSV  L            +     A+ M +  +K
Sbjct: 156 LILDSVQTLWTDQVESPPGTVTQVRASAQAMVRYAKK 192


>gi|118091746|ref|XP_001232262.1| PREDICTED: similar to RAD51-like 1 (S. cerevisiae) [Gallus gallus]
          Length = 402

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 60/195 (30%), Gaps = 25/195 (12%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI----- 88
           ++  + SI      + +    LD  L  GG P G + E+  P   GKT   +        
Sbjct: 69  EMKVRRSINPSAAFLPTSLHSLDKVL-HGGIPCGSLTELTSPPGCGKTQFCITMSVLATL 127

Query: 89  -AQSQKTGGTCAFVDAEHALDSIYARKLGV-------DLKNLLISQPDTGEQALEITDML 140
                   G   ++D E A  +    ++         D    L     +     E+T   
Sbjct: 128 PVSMGGLDGAVIYIDTESAFSAERLIEIAGNRFPTYFDSDEKLFCMTRSIHLYRELTCDS 187

Query: 141 VRSGAVDI----------IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           V      +          ++I    A   R E +  +  +L   ++  +++    L    
Sbjct: 188 VLKRIKSLEEEIISKKIKLIIIDSVASVVRKEFDTKLQGNL-AERSNFLARGASLLKYVA 246

Query: 191 SRSKCILVFINQMRM 205
                 ++  NQ+  
Sbjct: 247 EEFSIPVILTNQITT 261


>gi|323219801|gb|EGA04280.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
          Length = 423

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 12/156 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 26  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 82

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 83  AEQ-MKTLYVTGEESLQQVAMRAHRLGLPTANLNMLSETSIEQICLIAE----EEQPKLM 137

Query: 150 VIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
           VIDS+  +   A+I+   G  +     A  +++  +
Sbjct: 138 VIDSIQVMH-MADIQSSPGSVAQVRETAAYLTRFAK 172


>gi|322620588|gb|EFY17448.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
          Length = 424

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 12/156 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 27  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 83

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 84  AEQ-MKTLYVTGEESLQQVAMRAHRLGLPTANLNMLSETSIEQICLIAE----EEQPKLM 138

Query: 150 VIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
           VIDS+  +   A+I+   G  +     A  +++  +
Sbjct: 139 VIDSIQVMH-MADIQSSPGSVAQVRETAAYLTRFAK 173


>gi|321222452|gb|EFX47524.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
          Length = 460

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 12/156 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 63  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 120 AEQ-MKTLYVTGEESLQQVAMRAHRLGLPTANLNMLSETSIEQICLIAE----EEQPKLM 174

Query: 150 VIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
           VIDS+  +   A+I+   G  +     A  +++  +
Sbjct: 175 VIDSIQVMH-MADIQSSPGSVAQVRETAAYLTRFAK 209


>gi|283835053|ref|ZP_06354794.1| DNA repair protein RadA [Citrobacter youngae ATCC 29220]
 gi|291069345|gb|EFE07454.1| DNA repair protein RadA [Citrobacter youngae ATCC 29220]
          Length = 460

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 12/156 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 63  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 120 AEQ-MKTLYVTGEESLQQVAMRAHRLGLPTANLNMLSETSIEQICLIAE----EEQPKLM 174

Query: 150 VIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
           VIDS+  +   A+I+   G  +     A  +++  +
Sbjct: 175 VIDSIQVMH-MADIQSSPGSVAQVRETAAYLTRFAK 209


>gi|256003492|ref|ZP_05428482.1| DNA repair protein RadA [Clostridium thermocellum DSM 2360]
 gi|255992516|gb|EEU02608.1| DNA repair protein RadA [Clostridium thermocellum DSM 2360]
 gi|316941439|gb|ADU75473.1| DNA repair protein RadA [Clostridium thermocellum DSM 1313]
          Length = 454

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 4/141 (2%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   +D  LG GG  KG ++ + G    GK+TL L  I    KT     +V  E ++  
Sbjct: 71  TGIKEMDRVLG-GGIVKGSLILVGGDPGIGKSTLLLQ-ICDKIKTNAKILYVSGEESIKQ 128

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           I  R   ++++N  +      E   ++   L  +   D+IVIDS+  +            
Sbjct: 129 IKLRADRLNVRNPNLL--MLSETNFKVIQALSETERPDLIVIDSIQTMFNDELPSAPGSV 186

Query: 170 SLPGMQARLMSQALRKLTSSI 190
           S        + +  + L  +I
Sbjct: 187 SQVREITSGLMRIAKTLNIAI 207


>gi|237729288|ref|ZP_04559769.1| DNA repair protein RadA [Citrobacter sp. 30_2]
 gi|226909017|gb|EEH94935.1| DNA repair protein RadA [Citrobacter sp. 30_2]
          Length = 460

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 12/156 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 63  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 120 AEQ-MKTLYVTGEESLQQVAMRAHRLGLPTANLNMLSETSIEQICLIAE----EEQPKLM 174

Query: 150 VIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
           VIDS+  +   A+I+   G  +     A  +++  +
Sbjct: 175 VIDSIQVMH-MADIQSSPGSVAQVRETAAYLTRFAK 209


>gi|213612473|ref|ZP_03370299.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 253

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 12/156 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 63  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 120 AEQ-MKTLYVTGEESLQQVAMRAHRLGLPTANLNMLSETSIEQICLIAE----EEQPKLM 174

Query: 150 VIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
           VIDS+  +   A+I+   G  +     A  +++  +
Sbjct: 175 VIDSIQVMH-MADIQSSPGSVAQVRETAAYLTRFAK 209


>gi|213419751|ref|ZP_03352817.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 214

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 12/156 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 63  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 120 AEQ-MKTLYVTGEESLQQVAMRAHRLGLPTANLNMLSETSIEQICLIAE----EEQPKLM 174

Query: 150 VIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
           VIDS+  +   A+I+   G  +     A  +++  +
Sbjct: 175 VIDSIQVMH-MADIQSSPGSVAQVRETAAYLTRFAK 209


>gi|218439947|ref|YP_002378276.1| circadian clock protein KaiC [Cyanothece sp. PCC 7424]
 gi|218172675|gb|ACK71408.1| putative circadian clock protein, KaiC [Cyanothece sp. PCC 7424]
          Length = 506

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 3/91 (3%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           Q +  E IE + +G  G D  L  GG PKGR   + G   S KT  A   +A+  K G  
Sbjct: 3   QDNEQEYIEKLETGIPGFDF-LSEGGLPKGRATLVAGTAGSAKTVFACQFLAEGIKRGEN 61

Query: 98  CAFVDAEHA--LDSIYARKLGVDLKNLLISQ 126
             FV  E          R  G ++      +
Sbjct: 62  GVFVTFEEPPKALRKNMRGFGWNISQWEEER 92



 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 54/131 (41%), Gaps = 13/131 (9%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            ++SGS  LD   G GGF +  I+ + G   +GKT +    +A     G  C     E +
Sbjct: 255 RITSGSEELDRMCG-GGFFRDSIILVSGATGTGKTLMVTEFMAGGVANGERCLVFAFEES 313

Query: 107 LDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDMLVRSGAVDIIVIDSV 154
            + ++    G  +            ++   P+T   E  L     ++     + + +DS+
Sbjct: 314 REQLFRNATGWGVDFNRMEQEGKLKVVCRYPETTGLENHLISMKEMIEEFKPNRVAVDSL 373

Query: 155 AALTPRAEIEG 165
           +AL   + ++G
Sbjct: 374 SALERVSSLKG 384


>gi|161617890|ref|YP_001591855.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167552197|ref|ZP_02345950.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|168230226|ref|ZP_02655284.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168234712|ref|ZP_02659770.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168464500|ref|ZP_02698403.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|168822120|ref|ZP_02834120.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194442809|ref|YP_002043821.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194472032|ref|ZP_03078016.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194737472|ref|YP_002117490.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197251409|ref|YP_002149522.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|204926947|ref|ZP_03218149.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205355293|ref|YP_002229094.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|238910738|ref|ZP_04654575.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|161367254|gb|ABX71022.1| hypothetical protein SPAB_05757 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194401472|gb|ACF61694.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194458396|gb|EDX47235.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194712974|gb|ACF92195.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195632819|gb|EDX51273.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197215112|gb|ACH52509.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197291903|gb|EDY31253.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|204323612|gb|EDZ08807.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205275074|emb|CAR40163.1| putative DNA repair protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205323101|gb|EDZ10940.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205335218|gb|EDZ21982.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205341384|gb|EDZ28148.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320089008|emb|CBY98764.1| DNA repair protein radA homolog DNA repair protein sms homolog
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|322615740|gb|EFY12660.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322621785|gb|EFY18635.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322627510|gb|EFY24301.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322630817|gb|EFY27581.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322637965|gb|EFY34666.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642235|gb|EFY38843.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644956|gb|EFY41488.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651120|gb|EFY47505.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656624|gb|EFY52912.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322658718|gb|EFY54975.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322661840|gb|EFY58056.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322666414|gb|EFY62592.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672430|gb|EFY68542.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676262|gb|EFY72333.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322679649|gb|EFY75694.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322684359|gb|EFY80363.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323191841|gb|EFZ77090.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196688|gb|EFZ81835.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323200957|gb|EFZ86026.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323209354|gb|EFZ94287.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212959|gb|EFZ97761.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216702|gb|EGA01427.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323226135|gb|EGA10352.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323228788|gb|EGA12917.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323236601|gb|EGA20677.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239899|gb|EGA23946.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323242054|gb|EGA26083.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323247505|gb|EGA31460.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250607|gb|EGA34489.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323259337|gb|EGA42979.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323263786|gb|EGA47307.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323265620|gb|EGA49116.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323270065|gb|EGA53513.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326630461|gb|EGE36804.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 460

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 12/156 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 63  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 120 AEQ-MKTLYVTGEESLQQVAMRAHRLGLPTANLNMLSETSIEQICLIAE----EEQPKLM 174

Query: 150 VIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
           VIDS+  +   A+I+   G  +     A  +++  +
Sbjct: 175 VIDSIQVMH-MADIQSSPGSVAQVRETAAYLTRFAK 209


>gi|149240289|ref|XP_001526020.1| hypothetical protein LELG_02578 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146450143|gb|EDK44399.1| hypothetical protein LELG_02578 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 711

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 70/228 (30%), Gaps = 27/228 (11%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG--TCAFVDAEH 105
           +S+G   LD  LG GG P G + E++G    GK+      I  S   G   T   V  E 
Sbjct: 201 ISTGLPDLDEQLG-GGIPIGEVSEVFGASGCGKSQFVYQIIHNSILQGAKNTVVHVATES 259

Query: 106 ALDSIYARKL-----------GVDLKNLLISQPDTGEQALEITDMLVRSG------AVDI 148
            ++S   + +              L  +        E    I    +            +
Sbjct: 260 FMESKRLKDIFESDSSSSSSLSSKLDRMSYIYCPDLETQDHILFTQLPIHLQENIGKTKL 319

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +VIDS+A    R +       S        + + + +L           V  N  +    
Sbjct: 320 LVIDSIAQHFRREDAM-----STASTLKNQIDEQVLELAQ--DEEFKSTVMPNHKKQLKL 372

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256
           V + S +  T    L +   +   + R+    +   +  NQ       
Sbjct: 373 VSYKSAKYATRSTKLHYLCQMYRHLARLARQYNIAVVIINQVSAHTND 420


>gi|16767820|ref|NP_463435.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167989822|ref|ZP_02570922.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168244521|ref|ZP_02669453.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194451430|ref|YP_002048600.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197262809|ref|ZP_03162883.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|17865725|sp|P24517|RADA_SALTY RecName: Full=DNA repair protein RadA; AltName: Full=DNA repair
           protein Sms
 gi|16423145|gb|AAL23394.1| putative ATP-dependent protease [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|194409734|gb|ACF69953.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197241064|gb|EDY23684.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|205331351|gb|EDZ18115.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205336604|gb|EDZ23368.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|261249659|emb|CBG27530.1| putative DNA repair protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267996943|gb|ACY91828.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301161058|emb|CBW20595.1| putative DNA repair protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312915673|dbj|BAJ39647.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|323132920|gb|ADX20350.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
          Length = 460

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 12/156 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 63  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 120 AEQ-MKTLYVTGEESLQQVAMRAHRLGLPTANLNMLSETSIEQICLIAE----EEQPKLM 174

Query: 150 VIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
           VIDS+  +   A+I+   G  +     A  +++  +
Sbjct: 175 VIDSIQVMH-MADIQSSPGSVAQVRETAAYLTRFAK 209


>gi|16763370|ref|NP_458987.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29144848|ref|NP_808190.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56416349|ref|YP_153424.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62182994|ref|YP_219411.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|168262366|ref|ZP_02684339.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|197365271|ref|YP_002144908.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198242633|ref|YP_002218450.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200389151|ref|ZP_03215763.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|213051980|ref|ZP_03344858.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213427580|ref|ZP_03360330.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213650713|ref|ZP_03380766.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213852195|ref|ZP_03381727.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|224586397|ref|YP_002640196.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|289825538|ref|ZP_06544739.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25301657|pir||AC1074 probable DNA repair protein radA [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16505679|emb|CAD03410.1| putative DNA repair protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29140487|gb|AAO72050.1| putative DNA repair protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56130606|gb|AAV80112.1| putative DNA repair protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62130627|gb|AAX68330.1| putative ATP-dependent protease, DNA repair protein [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|197096748|emb|CAR62371.1| putative DNA repair protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197937149|gb|ACH74482.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199606249|gb|EDZ04794.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205348974|gb|EDZ35605.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|224470925|gb|ACN48755.1| putative DNA repair protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322717501|gb|EFZ09072.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|326626258|gb|EGE32603.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 460

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 12/156 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 63  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 120 AEQ-MKTLYVTGEESLQQVAMRAHRLGLPTANLNMLSETSIEQICLIAE----EEQPKLM 174

Query: 150 VIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
           VIDS+  +   A+I+   G  +     A  +++  +
Sbjct: 175 VIDSIQVMH-MADIQSSPGSVAQVRETAAYLTRFAK 209


>gi|78777040|ref|YP_393355.1| DNA repair protein RadA [Sulfurimonas denitrificans DSM 1251]
 gi|78497580|gb|ABB44120.1| DNA repair protein RadA [Sulfurimonas denitrificans DSM 1251]
          Length = 448

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 63/193 (32%), Gaps = 22/193 (11%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I   SS S  LD  LG GG   G +  I G    GK+TL L        +G    +V 
Sbjct: 66  EEIFRFSSKSRELDGVLG-GGIVPGSLTLIGGSPGVGKSTLLLKVGGDIASSGQNVLYVT 124

Query: 103 AEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
            E +   I   A +L  +   L +         LE   + V       I+IDS+  L   
Sbjct: 125 GEESTSQIKLRANRLNSNQDTLFLLSEI----RLEQVLVEVEHRNYSFIIIDSIQTLYSE 180

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
                    +        + +        I++ + I +FI     K G +        G 
Sbjct: 181 NISSAPGSVTQVRQITFELMR--------IAKDRNIAIFIIGHITKEGSI-------AGP 225

Query: 221 NALKFYSSVRLDI 233
             L+      L  
Sbjct: 226 RVLEHMVDTVLYF 238


>gi|56460974|ref|YP_156255.1| DNA repair protein RadA [Idiomarina loihiensis L2TR]
 gi|56179984|gb|AAV82706.1| ATP-dependent serine protease [Idiomarina loihiensis L2TR]
          Length = 454

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 10/154 (6%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   SSG    D  LG GG   G  + I G   +GK+TL L  + +  +      +V
Sbjct: 68  LQEVPRFSSGFQEFDRVLG-GGVVPGSAILIGGSPGAGKSTLLLQALCKLAER-MPALYV 125

Query: 102 DAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +   A++L +    L +    + E   ++ D         I+VIDS+  +  
Sbjct: 126 TGEESLQQVAMRAQRLNLPTDKLRMLSETSVESICQLADK----EKPAIMVIDSIQVMH- 180

Query: 160 RAEIEGDMGE-SLPGMQARLMSQALRKLTSSISR 192
            A+I+   G  S     A  +++  ++   +I  
Sbjct: 181 MADIQSAPGSVSQVRESAAFLTRYAKQKNVAIIM 214


>gi|71901722|ref|ZP_00683795.1| DNA repair protein RadA [Xylella fastidiosa Ann-1]
 gi|71728519|gb|EAO30677.1| DNA repair protein RadA [Xylella fastidiosa Ann-1]
          Length = 472

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 55/139 (39%), Gaps = 4/139 (2%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+G    D  LG GG   G +V I G    GK+TL L  +A+   T  T  +V  E +
Sbjct: 90  RISTGIGEFDRVLG-GGLVAGAVVLIGGDPGIGKSTLLLQALARMASTLPT-LYVTGEES 147

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           L  +  R + +DL   L       E  +E       S    +IV DSV  L   A     
Sbjct: 148 LAQVAGRAVRLDLP--LEGLNALAETGIESILQHASSAQPRLIVADSVQTLWTEALTAAP 205

Query: 167 MGESLPGMQARLMSQALRK 185
              S     A  + +  ++
Sbjct: 206 GSISQVRESAAQLVRYAKE 224


>gi|311261252|ref|XP_003128695.1| PREDICTED: DNA repair protein RAD51 homolog 2-like [Sus scrofa]
          Length = 398

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 80/251 (31%), Gaps = 56/251 (22%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV-EIYGPESSGKTTLALHTI------ 88
           G Q ++    + +S+G L L            R+V  I GP   GKT   +         
Sbjct: 125 GLQEAVIPPQQPLSTGCLSL--------LMTRRLVPRITGPPGCGKTQFCIMMSILATLP 176

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGV------------------DLKNLLISQPDTG 130
                  G   ++D E A  +    ++                     +        D  
Sbjct: 177 IDMGGLEGAVVYIDTESAFSAERLVEMAESRFPRYFSTEEKLLLTVSKVHLYRELSCDEV 236

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
            Q +E  +  + S  V +++IDSVA++  R E +  +  +    + + +++    L    
Sbjct: 237 LQRIESLEEEIISKGVKLVIIDSVASVV-RKEFDTQLQGN-MRERNKFLAREAASLKYLA 294

Query: 191 SRSKCILVFINQMRMK-------------IGVMFGSPETTTG--------GNALKFYSSV 229
                 ++  NQ+                        E T+G        GN      + 
Sbjct: 295 EEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCMTAALGNTWSHSVNT 354

Query: 230 RLDIRRVGSIK 240
           RL ++ +GS K
Sbjct: 355 RLILQYLGSEK 365


>gi|290979308|ref|XP_002672376.1| predicted protein [Naegleria gruberi]
 gi|284085952|gb|EFC39632.1| predicted protein [Naegleria gruberi]
          Length = 1023

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 70/206 (33%), Gaps = 32/206 (15%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT--CAFVDAE----HALDSIYARKL 115
           GG P   I EI G  +SGK+   L  ++          C   D E    +    IY    
Sbjct: 802 GGIPLNMITEIVGATTSGKSEFCLSAVSDLLMEFDKFGCVIFDTEVKQANIFQRIYFMMK 861

Query: 116 GVDLKN---------------LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
             +                  + ++       +L+  +  +    + +IVIDS+A L+ +
Sbjct: 862 NRNPDMSESEIEERILKKCTIIHVASSKELIDSLDNLEEFIFEKNIKLIVIDSLATLSTK 921

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
            E +G  G +    +A ++      L     + K  ++  N +                G
Sbjct: 922 -EFQGKEGGA--FERASILQTEATLLKQLNEKFKVGVLVTNSLSSSDEAQL--------G 970

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSIT 246
                + + RL I ++G  K   +I 
Sbjct: 971 INWYHFVNHRLKIYKIGESKAIINIV 996


>gi|223937898|ref|ZP_03629798.1| putative circadian clock protein, KaiC [bacterium Ellin514]
 gi|223893504|gb|EEF59965.1| putative circadian clock protein, KaiC [bacterium Ellin514]
          Length = 497

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 73/271 (26%), Gaps = 38/271 (14%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG----- 95
           +     +V++G  GLD  L  GG P+ RI  + G    GKTT+AL  + +  +       
Sbjct: 5   VNNSSNMVTTGVPGLDEIL-CGGLPRNRIYLVSGDPGVGKTTMALQFLLEGVRLKEPGLY 63

Query: 96  -----------------GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
                            G      A   L +I  +  G               +   +  
Sbjct: 64  ITLSETKDELIGVSESHGWSLEHFALFELSAIEQQLKGETENTFFHPSEVELNRTTRVIL 123

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL--------TSSI 190
             V       +V DS++ L   +E        +  ++     +    L        T   
Sbjct: 124 SEVERTNPVRVVFDSLSELRLMSETPLRFRRQMLSLKQFFAGRNCTVLFLDDRSADTRDA 183

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
                    ++  +            T        +   R D      IK    +   + 
Sbjct: 184 QVESIAHGVLSMEKTSPEYGISRRTFTVDKVRGVKFMEGRHDFV----IKKGGMVIFPRL 239

Query: 251 RV---KVVKNKMASPFKQVEFDIMYGEGISF 278
                     + A P    E D + G GI  
Sbjct: 240 IAAEHHTEFKREAFPSGIAELDALLGGGIDR 270



 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 60/159 (37%), Gaps = 9/159 (5%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E   SG   LD  LG GG  +G      GP  +GK+TLA+   + +   G    F   + 
Sbjct: 251 EAFPSGIAELDALLG-GGIDRGTSNMFMGPPGTGKSTLAMRYASAAVAKGEKVRFFSFDE 309

Query: 106 ALDSIYAR--KLGVDLKNLLIS--QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
              ++  R   LG+D++  L S           EI+   +       +  D    +    
Sbjct: 310 TAGTLVGRSIALGMDIRPHLKSGLLCIEQIDPAEISPGELAHSIQKAVEKDGTRMVI--- 366

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            I+   G        R +S  L +L S +++   I + +
Sbjct: 367 -IDSINGYLNAMPGERFLSLQLHELLSYLNQQGVITIMV 404


>gi|332140439|ref|YP_004426177.1| DNA repair protein RadA [Alteromonas macleodii str. 'Deep ecotype']
 gi|332141892|ref|YP_004427630.1| DNA repair protein RadA [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550461|gb|AEA97179.1| DNA repair protein RadA [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551914|gb|AEA98632.1| DNA repair protein RadA [Alteromonas macleodii str. 'Deep ecotype']
          Length = 455

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 83/244 (34%), Gaps = 17/244 (6%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
                E +   SS    LD  LG GG   G  + I G   +GK+TL L  + Q  K+  +
Sbjct: 64  NAIDLESLPRFSSTFKELDRVLG-GGIVPGAAMLIGGSPGAGKSTLLLQVMCQMAKSE-S 121

Query: 98  CAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
             +V  E +L  +   A++L +    L++      E   ++           I+VIDS+ 
Sbjct: 122 ALYVTGEESLQQVAMRAKRLSLPDDKLMMLAETNVETICDLALT----QKPKIMVIDSIQ 177

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
            +            S     A  +++  ++   ++     +    N    K+        
Sbjct: 178 VMHVSDVQSAPGSVSQVRESAAYLTRFAKQNHIAMFIVGHVTKDGNLAGPKVLEHCIDSS 237

Query: 216 TTTGGNALKFYSSVRLDIRRVGSIKD---------KDSITGNQTRVKVVKNKMASPFKQV 266
               G +   Y ++R    R G++ +               N + + + +    +P   V
Sbjct: 238 MMLEGESDGRYRTLRSHKNRFGAVNELGVFAMTEKGLKEVSNPSAIFLSRGDNDTPGSSV 297

Query: 267 EFDI 270
               
Sbjct: 298 MVIW 301


>gi|260913893|ref|ZP_05920367.1| DNA repair protein RadA [Pasteurella dagmatis ATCC 43325]
 gi|260631980|gb|EEX50157.1| DNA repair protein RadA [Pasteurella dagmatis ATCC 43325]
          Length = 459

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 61/153 (39%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +     SSG   LD  LG GG   G  + I G   +GK+TL L  +    K+  T  +V
Sbjct: 70  LQETPRFSSGFNELDRVLG-GGVVPGSAILIGGHPGAGKSTLLLQVMCGLAKS-MTALYV 127

Query: 102 DAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +   A++LG+    L +    + EQ   + D L       IIVIDS+  +  
Sbjct: 128 TGEESLQQVAMRAKRLGLPADKLNMLSETSVEQICNLADQLKPQ----IIVIDSIQVMHL 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     +     A  +++  +    +I  
Sbjct: 184 ADIQSSPGSVAQVRECASFLTRYAKTRQVAIIM 216


>gi|310794671|gb|EFQ30132.1| DNA repair protein RAD57 [Glomerella graminicola M1.001]
          Length = 462

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 64/197 (32%), Gaps = 26/197 (13%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-----KTGGTCAF 100
             +S+    LD ALG GG P G + E+ G    GKT L L  +   Q       G    +
Sbjct: 93  STISTLDDDLDRALG-GGLPTGYVTEVTGESGVGKTQLLLSLLLAVQLPPPYGLGRPALY 151

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQP-----------------DTGEQALEITDMLVRS 143
           +  E  L +I   ++           P                 ++ E  L+    +   
Sbjct: 152 ITTEAQLSTIRLSQMLSANPRFADLPPGDRPSLDGISSTSTPDLESQEHILQFQVPVEVE 211

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESL---PGMQARLMSQALRKLTSSISRSKCILVFI 200
                +++    A   RAE E     SL    G ++  +++    L     +    +V  
Sbjct: 212 RRNTGLIVLDSVASNYRAEFERGHVSSLGSNMGARSTELTRLGALLRELAQKYNLAVVVA 271

Query: 201 NQMRMKIGVMFGSPETT 217
           NQ+  +         T 
Sbjct: 272 NQVADRFSSPLVPMATP 288


>gi|148255720|ref|YP_001240305.1| circadian clock protein KaiC [Bradyrhizobium sp. BTAi1]
 gi|146407893|gb|ABQ36399.1| circadian clock protein KaiC [Bradyrhizobium sp. BTAi1]
          Length = 509

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 69/212 (32%), Gaps = 14/212 (6%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VSSG   LD   G GGF +  I+ + G   +GKT +  H +  + + G     + AE +
Sbjct: 255 RVSSGVPELDQMCG-GGFYRDSIILVSGATGTGKTLMVTHYLRAAIERGERALLIAAEES 313

Query: 107 LDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDMLVRSGAVDIIVIDSV 154
            + +       ++            ++   P+T   E  L      +       I +DS+
Sbjct: 314 REQLTRNASNWNVDFDSAEKEGLLRIIARYPETMGLEDHLLYIQREINEFQPSRIAVDSL 373

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           +A   RA       E +  + + +    +  L ++ +        I +  +         
Sbjct: 374 SA-FERAGTPKSYREFVIALTSHIKKVGITGLFTNTTSMLMGGASITETHISTITDMIVL 432

Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
                   +       L +R     KD     
Sbjct: 433 LRYVELYGVMRRGLAILKMRGTQHDKDIREYV 464



 Score = 42.9 bits (99), Expect = 0.079,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 50/139 (35%), Gaps = 23/139 (16%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ---SQKTGGTCAF 100
            +E + +G  G D  +  GG P  R   + G   SGKT LAL  +     +    G C  
Sbjct: 8   ELEKLRTGIAGFDQ-ISNGGLPLNRSTLVSGTAGSGKTVLALQFLVMGVQTCAEHGVCVT 66

Query: 101 VDAEHALDSIYARKLGVDLKNL-----LISQPDTGEQALEITDM--------------LV 141
            +             G D ++L     +     T EQ  E+ +                +
Sbjct: 67  FEEAPEDLMRNVASFGWDFESLNRNGQIAIVDATPEQGEEMVEAGAYDLSALMVRIENAI 126

Query: 142 RSGAVDIIVIDSVAALTPR 160
           R      +V+DSV AL P+
Sbjct: 127 RKVNAKRVVLDSVGALFPQ 145


>gi|322710724|gb|EFZ02298.1| DNA repair protein (Rad57), putative [Metarhizium anisopliae ARSEF
           23]
          Length = 402

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 59/181 (32%), Gaps = 25/181 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-----KTGGTCAFVD 102
           +S+    +D AL   G P   I EI G   +GKT   L      Q            ++ 
Sbjct: 118 ISTLCPQIDAALNS-GIPTSSITEITGESGAGKTQFLLSLCLAVQLPPPHGLRKQALYIS 176

Query: 103 AEHALDSIYARKL--------------GVDLKNLLISQPD---TGEQALEITDMLVRSGA 145
            E +L +    ++                 L N+L +      + +  LE    ++ S  
Sbjct: 177 TESSLATKRLSQILASNPLLQDIDFADRPSLDNILSTVTPDLESQDHILEYQVPVLLSRH 236

Query: 146 VDIIVIDSVAALTPRAEIE--GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
              +++    A   RAE E  G    S    ++  + +    L     R    +V  NQ 
Sbjct: 237 NIGLLVIDSVAANYRAEFERAGSSYGSNMAARSAELVRLGALLRDLARRHGIAVVVANQD 296

Query: 204 R 204
            
Sbjct: 297 F 297


>gi|320100450|ref|YP_004176042.1| putative circadian clock protein, KaiC [Desulfurococcus mucosus DSM
           2162]
 gi|319752802|gb|ADV64560.1| putative circadian clock protein, KaiC [Desulfurococcus mucosus DSM
           2162]
          Length = 249

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E V +G  GLD  L  GG P+  +V + G   +GKT LAL  +    + G    +V  E
Sbjct: 2   VERVKTGVPGLDEILN-GGIPRRNVVLLSGGPGTGKTILALQFLWSGLQLGEPGIYVALE 60

Query: 105 --HALDSIYARKLGVDLKNLLIS 125
                  +  R  G D +     
Sbjct: 61  EHPVQVRVNMRGFGWDTRQFEQE 83


>gi|240172171|ref|ZP_04750830.1| DNA repair protein RadA [Mycobacterium kansasii ATCC 12478]
          Length = 420

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 7/127 (5%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +G   LD  LG GG   G +  + G    GK+TL L    +  ++G    ++  E +  
Sbjct: 21  PTGIDELDRVLG-GGVVPGSVTLLAGEPGVGKSTLLLEVAHRWAQSGQRALYISGEESAG 79

Query: 109 SIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
            I  R  ++G   + + ++        L+     + +    ++++DSV  ++        
Sbjct: 80  QIRLRADRIGCKGEQVYLAAESDVHAVLD----HIETVQAALVIVDSVQTMSTSEADGVA 135

Query: 167 MGESLPG 173
            G +   
Sbjct: 136 GGVTQVR 142


>gi|307153259|ref|YP_003888643.1| putative circadian clock protein KaiC [Cyanothece sp. PCC 7822]
 gi|306983487|gb|ADN15368.1| putative circadian clock protein, KaiC [Cyanothece sp. PCC 7822]
          Length = 519

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 1/97 (1%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           L SQ +  + I+ + +G  G D  L  GG PKGR   + G   S KT  A   +A+  K 
Sbjct: 13  LMSQDNEQDYIQKLETGIPGFDF-LSEGGLPKGRATLVAGTAGSAKTVFACQFLAEGIKR 71

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           G    FV  E    ++    LG         +     
Sbjct: 72  GENGVFVTFEEPPKALRKNMLGFGWDIRQWEENRQWA 108



 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 13/131 (9%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            ++SGS  LD   G GGF +  I+ + G   +GKT +    +A     G  C     E +
Sbjct: 268 RITSGSEELDRMCG-GGFFRDSIILVSGATGTGKTLMVTEFMAGGVANGERCLIFAFEES 326

Query: 107 LDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDMLVRSGAVDIIVIDSV 154
            + ++   +G  +            ++   P+T   E  L     ++     + + +DS+
Sbjct: 327 REQLFRNAIGWGVDFNRMEQEGKLKVVCRYPETTGLENHLISMKEIIEEFKPNRVAVDSL 386

Query: 155 AALTPRAEIEG 165
           +AL   + ++G
Sbjct: 387 SALERVSNLKG 397


>gi|147677083|ref|YP_001211298.1| ATPase [Pelotomaculum thermopropionicum SI]
 gi|146273180|dbj|BAF58929.1| RecA-superfamily ATPase [Pelotomaculum thermopropionicum SI]
          Length = 460

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 59/155 (38%), Gaps = 14/155 (9%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E++ +G  GLD  L  GG P+G  V + G   +GKT L +  +A+     G      +  
Sbjct: 236 ELLHTGVPGLDNLL-RGGLPRGACVTVVGGSGTGKTLLGMQFLARGALDYGEKGIFLSLE 294

Query: 106 ALDSIYA---RKLGVDLKNL----LISQPDTGEQALEITDMLV------RSGAVDIIVID 152
            + S      R    DL  L    +I         +EI + ++       +     +VID
Sbjct: 295 EIPSHIMANARHFNWDLHTLQEQGMIKIIYMPLSEMEIDETIIGLGEQAGTFGASRLVID 354

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           S+  L  R +    + E L  +   L S     L 
Sbjct: 355 SIYGLLSRIDNAAVLHEKLYSLVTHLNSLNCTTLL 389



 Score = 37.5 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++ V +G  G D  L +GG  +G  V + G   +GKTT  +  I +     G    +   
Sbjct: 1   MDKVPTGIKGFDELL-LGGIVRGNAVLVEGVPGAGKTTFGIEFIYRGITEFGEPGVIVTC 59

Query: 105 HALDSIYAR---KLGVDLKNLLI 124
             L     R     G DL+ L  
Sbjct: 60  EQLPQSMYRDALNFGWDLRALEE 82


>gi|312381363|gb|EFR27126.1| hypothetical protein AND_06356 [Anopheles darlingi]
          Length = 323

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ--SQKTGGTCAFVDA 103
             +++G   LD  L  GG   G I E+ G   +GKT L L   A      +     F D 
Sbjct: 79  PAIATGITALDELL-RGGLRPGHIYELCGESCAGKTQLCLTLAANVAFAHSNRPVYFFDT 137

Query: 104 EHALDSIYARKL 115
             A  +I  +++
Sbjct: 138 RSAFSAIRIQQI 149


>gi|307696988|gb|ADN85960.1| disrupted meiotic cDNA 1 protein [Leymus akmolinensis]
          Length = 160

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 19/172 (11%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEI 163
           +   +       L N++ ++  T E    +       +      ++++DSV AL      
Sbjct: 2   IAERFGMDANAVLDNIIYARAYTYEHQYSLLLGLAAKMAEEPFRLLIVDSVIALFR---- 57

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGN 221
               G      + + ++Q L +LT         +   NQ+    G       P+   GG+
Sbjct: 58  VDFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGH 117

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
            L   +++RL +R+           G Q   K+       P  +  F I  G
Sbjct: 118 VLAHAATIRLMLRKGK---------GEQRVCKIFDAPNL-PEGEAVFQITTG 159


>gi|303327025|ref|ZP_07357467.1| DNA repair protein RadA [Desulfovibrio sp. 3_1_syn3]
 gi|302863013|gb|EFL85945.1| DNA repair protein RadA [Desulfovibrio sp. 3_1_syn3]
          Length = 455

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 3/139 (2%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SG   LD  LG G  P G  + + G    GK+TL L         G    +   E +L  
Sbjct: 77  SGLKALDRVLGKGLVP-GAAILVGGEPGIGKSTLLLQVAGLVAAQGKAVLYASGEESLPQ 135

Query: 110 I--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           I     +L +   +LL       E  L+  + +  S    ++++DSV  +T         
Sbjct: 136 IKARGERLRMLDPHLLALATSKVEDVLDALNGVGGSRPPALVIVDSVQTVTSLEAEGLPG 195

Query: 168 GESLPGMQARLMSQALRKL 186
             S     A  + +A R++
Sbjct: 196 NVSQVRAVATALLEACRRV 214


>gi|315425353|dbj|BAJ47019.1| circadian clock protein, KaiC [Candidatus Caldiarchaeum
           subterraneum]
          Length = 260

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 3/111 (2%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +S+G+  LD  LG GG  +GR   + G    GKT L+L  +        TC +V  + 
Sbjct: 9   ERLSTGNPRLDKMLG-GGLIRGRTYLVTGETGVGKTILSLQYLLNGLTQNETCVYVTIDE 67

Query: 106 ALDSIYA--RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
            ++ +      LG +    + +      +         + G      +D++
Sbjct: 68  RVEGVLRGAESLGWNFWAFMEAGRFIPLELRLYAAEARKYGKESRAFVDAI 118


>gi|71907616|ref|YP_285203.1| DNA repair protein RadA [Dechloromonas aromatica RCB]
 gi|71847237|gb|AAZ46733.1| DNA repair protein RadA [Dechloromonas aromatica RCB]
          Length = 453

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 59/162 (36%), Gaps = 13/162 (8%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +++G    D ALG GG   G +V I G    GK+TL L  +A              
Sbjct: 66  EVERIATGIGEFDRALG-GGLVNGAVVLIGGDPGIGKSTLLLQALAHLSLDNKVLYVSGE 124

Query: 104 EHALD-SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           E     ++ AR+LG+D + L +      E+ L             + VIDS+  L     
Sbjct: 125 ESGEQVALRARRLGLDTRRLQLMAEINLERILATLQA----EKPVVAVIDSIQTLWSDQL 180

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
                  +     A        +LT    ++   ++ +  + 
Sbjct: 181 SSAPGSVAQVRECAA-------QLTRLAKQAGITVILVGHVT 215


>gi|296271363|ref|YP_003653995.1| DNA repair protein RadA [Thermobispora bispora DSM 43833]
 gi|296094150|gb|ADG90102.1| DNA repair protein RadA [Thermobispora bispora DSM 43833]
          Length = 475

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 49/140 (35%), Gaps = 4/140 (2%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           +   +G   LD  LG GG   G +V I G    GK+TL L   A   +   T  +V  E 
Sbjct: 67  QASPTGISELDRVLG-GGLVPGAVVLIAGEPGIGKSTLLLDAAAHVARRE-TVLYVTGEE 124

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +   +  R     +  +        E  L      +      +++IDSV  +        
Sbjct: 125 SAGQVRMRA--DRIGAIEDRLYLAAETDLAAVLTHIEKVQPSLLIIDSVQTIASAEATGV 182

Query: 166 DMGESLPGMQARLMSQALRK 185
             G +     A  M +  ++
Sbjct: 183 PGGVTQVREVAATMVRVAKE 202


>gi|90020055|ref|YP_525882.1| DNA repair protein RadA [Saccharophagus degradans 2-40]
 gi|89949655|gb|ABD79670.1| DNA repair protein RadA [Saccharophagus degradans 2-40]
          Length = 454

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 73/199 (36%), Gaps = 17/199 (8%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +  ++SG   LD  LG G  P G +V I G   +GK+TL L T+    +      +V  
Sbjct: 70  ELPRIASGMDELDRVLGGGFVP-GSVVLIGGNPGAGKSTLLLQTLCHLSQK-HPALYVTG 127

Query: 104 EHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           E +L  +   A++LG+    L +      +  L             ++V+DS+  +   A
Sbjct: 128 EESLQQVAMRAQRLGLPTDKLQLLSATDVDALLASA----DQVKPKLMVVDSIQVMH-HA 182

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS--PETTTG 219
           +I+   G          + ++   LT    ++  +L+ +  +     +            
Sbjct: 183 DIQSAPG------SVSQVRESAAALTRYAKQTGTVLILVGHVTKDGSLAGPKVLEHIIDC 236

Query: 220 GNALKFYSSVRLDIRRVGS 238
              ++  +  R    R   
Sbjct: 237 SIMIEGSNDSRFRTLRGSK 255


>gi|292493496|ref|YP_003528935.1| DNA repair protein RadA [Nitrosococcus halophilus Nc4]
 gi|291582091|gb|ADE16548.1| DNA repair protein RadA [Nitrosococcus halophilus Nc4]
          Length = 456

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 64/161 (39%), Gaps = 15/161 (9%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGTCAFVDAEH 105
            +S+G   LD  LG GG   G +V I G    GK+TL L  +A+      G   ++  E 
Sbjct: 71  RLSTGLSELDRVLG-GGLVAGSVVLIGGDPGIGKSTLLLQALAKLGTIQEGRVLYLTGEE 129

Query: 106 ALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           +L  I   A++LG+    + +      E+ L +    V+    +++V+DS+  L      
Sbjct: 130 SLAQISLRAQRLGLGTAPVRLLADTLVERVLAV----VQQERPEVMVVDSIQTLYTEQLQ 185

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
                 +     A        +L     +S   ++ +  + 
Sbjct: 186 SAPGTVTQVRESA-------GQLLRFAKQSGTAVILVGHVT 219


>gi|311896824|dbj|BAJ29232.1| putative DNA repair protein RadA [Kitasatospora setae KM-6054]
          Length = 510

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 4/120 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G +V + G    GK+TL L   A++        +V  E +  
Sbjct: 75  STGVPELDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDRHRTLYVTGEESAG 133

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +  R     +  +        EQ L      + +    ++++DSV  +   AE++G  G
Sbjct: 134 QVRLRA--DRIDAISDHLYLAAEQDLGAVLGHIEAVNPSLLILDSVQTIAS-AELDGAPG 190


>gi|238758573|ref|ZP_04619749.1| DNA repair protein radA [Yersinia aldovae ATCC 35236]
 gi|238794796|ref|ZP_04638398.1| DNA repair protein radA [Yersinia intermedia ATCC 29909]
 gi|238703273|gb|EEP95814.1| DNA repair protein radA [Yersinia aldovae ATCC 35236]
 gi|238725876|gb|EEQ17428.1| DNA repair protein radA [Yersinia intermedia ATCC 29909]
          Length = 461

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       + +   S+G L  D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 64  VQKLSDIS--LDELPRFSTGFLEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 120

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
                   +V  E +L  +  R  +LG+    L +    + EQ   I +         ++
Sbjct: 121 -SENMKTLYVTGEESLQQVAMRAHRLGLPTAGLNMLSETSIEQICLIAE----QEQPRLM 175

Query: 150 VIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
           VIDS+  +   A+I+   G  +     A  +++  +
Sbjct: 176 VIDSIQVMH-MADIQSSPGSVAQVRETAAYLTRFAK 210


>gi|238782718|ref|ZP_04626748.1| DNA repair protein radA [Yersinia bercovieri ATCC 43970]
 gi|238716378|gb|EEQ08360.1| DNA repair protein radA [Yersinia bercovieri ATCC 43970]
          Length = 461

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       + +   S+G L  D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 64  VQKLSDIS--LDELPRFSTGFLEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 120

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
                   +V  E +L  +  R  +LG+    L +    + EQ   I +         ++
Sbjct: 121 -SENMKTLYVTGEESLQQVAMRAHRLGLPTAGLNMLSETSIEQICLIAE----QEQPRLM 175

Query: 150 VIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
           VIDS+  +   A+I+   G  +     A  +++  +
Sbjct: 176 VIDSIQVMH-MADIQSSPGSVAQVRETAAYLTRFAK 210


>gi|300710269|ref|YP_003736083.1| putative circadian clock protein, KaiC [Halalkalicoccus jeotgali
           B3]
 gi|299123952|gb|ADJ14291.1| putative circadian clock protein, KaiC [Halalkalicoccus jeotgali
           B3]
          Length = 499

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 24/170 (14%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE- 104
           E + SG   LD  L  GG  +G    I GP   GKTT  +  + ++   G        E 
Sbjct: 245 ETIPSGVPELDQLL-YGGLERGTATIITGPTGVGKTTTGVQFMKEAAGRGERSVVYTFEE 303

Query: 105 ---------HALDSIYARKLGVDLKNLLISQP--DTGEQALEITDMLVRSGAVDIIVIDS 153
                     +++      L      +   +P   + ++        +     +I+++D 
Sbjct: 304 GRETLIHRCESINMPIREMLDRGTLRIEEIEPLELSADEFAYRVRREIEDHDTEIVMLDG 363

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           +     R  + GD  +         +++ + KL   +      L+ IN+ 
Sbjct: 364 IVG--YRLSVHGDRDD---------LTREIHKLGKYMKNMGATLLLINET 402



 Score = 42.1 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 82/259 (31%), Gaps = 16/259 (6%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VS+G  G+D  L  GGF   R   + G   +GK+ L LH +    + G    +++ E 
Sbjct: 9   ERVSTGVEGVDSIL-HGGFIPERTYMVRGDPGTGKSLLGLHFLLNGAENGEEVLYINPEE 67

Query: 106 ALDSIYARK--LGVDLKNLLISQPDTGEQALEI-------TDMLVRSGAVDIIVIDSVAA 156
           +  +I       G D+++L         +           +   V   ++   + D V  
Sbjct: 68  SAANIRQNAASFGFDVEDLEFLDLSPDSEFFSKDLSYDIFSPDEVEQESLTAEIADRVET 127

Query: 157 LTPRAEIEGDMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
           LTP       + +            + +      +      ++F +Q             
Sbjct: 128 LTPDRVFVDPLTQLRYLAPDDYQFRKQVLSFMDFLHGEGATVLFTSQDTT-PQPDDDLQF 186

Query: 216 TTTGGNALKFYSSVRL---DIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
            + G   L  +   RL      R  + +D       +     V   +       EF    
Sbjct: 187 MSDGTITLTRHLRERLLEVTKFRGSNFEDGRHSFRIRHGGLHVFPDLIPRQHGREFANET 246

Query: 273 -GEGISFFGELIDLGVKAS 290
              G+    +L+  G++  
Sbjct: 247 IPSGVPELDQLLYGGLERG 265


>gi|290968515|ref|ZP_06560054.1| DNA repair protein RadA [Megasphaera genomosp. type_1 str. 28L]
 gi|290781511|gb|EFD94100.1| DNA repair protein RadA [Megasphaera genomosp. type_1 str. 28L]
          Length = 463

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 45/118 (38%), Gaps = 3/118 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
             E    + +    LD  LG GG  +G IV + G    GK+TL L   A   K G    +
Sbjct: 65  AMEATSRLETHIGELDRVLG-GGLVRGSIVLLSGDPGIGKSTLVLQLAAAIGKQGYAVLY 123

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
              E +   I  R   + +    I      E +LE       +    +++IDS+  + 
Sbjct: 124 GSGEESAAQIKMRAQRLGITGTEIIV--QAETSLENILREAGTRRPALVIIDSIQTMF 179


>gi|302894239|ref|XP_003046000.1| hypothetical protein NECHADRAFT_5950 [Nectria haematococca mpVI
           77-13-4]
 gi|256726927|gb|EEU40287.1| hypothetical protein NECHADRAFT_5950 [Nectria haematococca mpVI
           77-13-4]
          Length = 364

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 74/209 (35%), Gaps = 27/209 (12%)

Query: 48  VSSGSLGLDIALG------------IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
           VS+G   LD AL              GG  +G++ EI+GP  +GKT L L  + ++ K  
Sbjct: 42  VSTGLEDLDHALAGTVSVDSQDSTPKGGVHRGQVTEIWGPPGTGKTALGLKAVIKTIKDD 101

Query: 96  GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
                   +  +++           +            +      V      ++VI S++
Sbjct: 102 Q------GDSDVEAHDVEGDAGRFLHYSCLTLPHFVALISRPTAKVIPANTSLVVISSLS 155

Query: 156 ALT----PRAEIEGDMGESLPGMQARLMSQ----ALRKLTSSISRSKCILVFINQMRMKI 207
           AL     P++     + +S  G+      Q     +  L    +   C +V ++Q   K+
Sbjct: 156 ALVNSALPKSHDGKAISKSAKGIPFTKRLQALQSIMNALHKLAATRNCAVVILSQCATKM 215

Query: 208 GVMFGSPET-TTGGNALKFYSSVRLDIRR 235
               G+  T        +   S RL + R
Sbjct: 216 HSERGATLTAAVNATVWEQGVSTRLVVFR 244


>gi|238025199|ref|YP_002909431.1| Rad553 [Burkholderia glumae BGR1]
 gi|237879864|gb|ACR32196.1| Rad553 [Burkholderia glumae BGR1]
          Length = 499

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           + + +G   LD  LG GGF +G    + GP   GKT LAL  +      G    ++
Sbjct: 254 QRLDTGLPHLDQLLG-GGFVRGSTTTVMGPSGVGKTLLALQFLQAGVARGEKAVYL 308



 Score = 41.8 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 5/96 (5%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99
           S  E +E V++G  GLD  LG GGF +G +  I G   +GKT L+        + G    
Sbjct: 14  SDIEPLENVATGVPGLDEILG-GGFVRGGLYLIEGMAGAGKTILSSQIGFHRVRQGERVL 72

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           ++     L +    KL   L+ L    P    Q + 
Sbjct: 73  YM----TLIAESHDKLLGHLRELDFFDPAAVAQKMM 104


>gi|321474080|gb|EFX85046.1| putative RAD51D [Daphnia pulex]
          Length = 226

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 43/107 (40%), Gaps = 11/107 (10%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQS----QKTGGTCAFVDAEHALDSIYARKLGV 117
           GG P GR+VE+YG   SGKT LALH  A +    Q         DA         + L  
Sbjct: 4   GGIPSGRLVEVYGDSGSGKTQLALHLTANTALKLQYEVCYITTGDANPKRILDIMQNLDK 63

Query: 118 D------LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           D      L+ +         Q LE+           +++IDS+A L 
Sbjct: 64  DGDYVKSLERITFCHIHDVYQLLEMLWTPEMKR-YKLVIIDSLATLF 109


>gi|307697056|gb|ADN85994.1| disrupted meiotic cDNA 1 protein [Leymus innovatus]
          Length = 160

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 58/172 (33%), Gaps = 19/172 (11%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEI 163
           +   +       L N++ ++  T E    +       +      ++++DSV AL      
Sbjct: 2   IAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR---- 57

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGN 221
               G      + + ++Q L +LT         +   NQ+    G       P+   GG 
Sbjct: 58  VDFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGR 117

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
            L   +++RL +R+           G Q   K+       P  +  F I  G
Sbjct: 118 VLAHAATIRLMLRKGK---------GEQRVCKIFDAPNL-PEGEAVFQITTG 159


>gi|257487866|ref|ZP_05641907.1| circadian clock gene kaiC [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331008573|gb|EGH88629.1| circadian clock protein kaiC [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 455

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC--AFVDAEH 105
           VSSG   LD  LG GG   G    I GP  +GK+ ++L   AQ+   G        D E 
Sbjct: 209 VSSGITELDDLLG-GGIESGSSTLILGPAGTGKSLISLVFAAQAVARGERVGLFIFDEEM 267

Query: 106 ALDSIYARKLGVDLKNL 122
            L      KLG+DL+ L
Sbjct: 268 GLLFERMLKLGIDLRAL 284


>gi|157147598|ref|YP_001454917.1| DNA repair protein RadA [Citrobacter koseri ATCC BAA-895]
 gi|157084803|gb|ABV14481.1| hypothetical protein CKO_03398 [Citrobacter koseri ATCC BAA-895]
          Length = 416

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 12/156 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 19  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 75

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+   N+ +    + EQ   I +         ++
Sbjct: 76  AEQ-MKTLYVTGEESLQQVAMRAHRLGLPTANMNMLSETSIEQICLIAE----EEQPKLM 130

Query: 150 VIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
           VIDS+  +   A+I+   G  +     A  +++  +
Sbjct: 131 VIDSIQVMH-MADIQSSPGSVAQVRETAAYLTRFAK 165


>gi|50119415|ref|YP_048582.1| DNA repair protein RadA [Pectobacterium atrosepticum SCRI1043]
 gi|49609941|emb|CAG73379.1| putative DNA repair protein [Pectobacterium atrosepticum SCRI1043]
          Length = 460

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 59/145 (40%), Gaps = 8/145 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E +   S+G L  D  LG GG   G  + I G   +GK+TL L T+ +  +      +V
Sbjct: 71  LEALPRFSTGFLEFDRVLG-GGVVPGSAILIGGSPGAGKSTLLLQTLCKLSEH-MKTLYV 128

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +L +  +NL +    + EQ   I +         ++VIDS+  +  
Sbjct: 129 TGEESLQQVAMRAHRLNLPTQNLNMLSETSIEQICLIAE----QEQPKLMVIDSIQVMHL 184

Query: 160 RAEIEGDMGESLPGMQARLMSQALR 184
                     +     A  +++  +
Sbjct: 185 ADIQSSPGSVAQVRETAAYLTRFAK 209


>gi|313682716|ref|YP_004060454.1| DNA repair protein rada [Sulfuricurvum kujiense DSM 16994]
 gi|313155576|gb|ADR34254.1| DNA repair protein RadA [Sulfuricurvum kujiense DSM 16994]
          Length = 450

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 82/238 (34%), Gaps = 31/238 (13%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + E  E  SS    LD+ LG GG   G +V I G    GK+TL L   +   K      +
Sbjct: 66  VEEHTERFSSDDAELDMVLG-GGVVPGSLVLIGGSPGVGKSTLLLKIGSNLAKQRRNVLY 124

Query: 101 VDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           V  E +   I   A +LG ++ NL +         LE     +   A + I+IDS+  L 
Sbjct: 125 VSGEESEGQIKLRANRLGANVDNLYLLAEI----RLEQVLAELHERAYECIIIDSIQTLY 180

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
                      +        + +        I++ + I +FI     K G +        
Sbjct: 181 SETIASAPGSVTQVRQITFDLMR--------IAKERRIAIFIIGHITKEGSI-------A 225

Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276
           G   L+    V L               G++ R+         P  ++    M  +G+
Sbjct: 226 GPRVLEHMVDVVLYFEGDS---------GHELRILRGFKNRFGPTSEIGVFEMRHDGL 274


>gi|293360010|ref|XP_576058.3| PREDICTED: RAD51-like 1 [Rattus norvegicus]
          Length = 470

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 25/151 (16%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI----- 88
           +L ++ S       +S+    LD AL  GG P G + E+ GP   GKT   +        
Sbjct: 69  ELKTRRSAHLSPAFLSTTLGALDEAL-HGGVPCGSLTEVTGPPGCGKTQFCIMMSVLATL 127

Query: 89  -AQSQKTGGTCAFVDAEHALDSIYARKL------------------GVDLKNLLISQPDT 129
             +     G   ++D E A  +    ++                     +        + 
Sbjct: 128 PTRLGGLEGAVLYIDTESAFTAERLVEIAESRFPQYFNTEEKLLLTSSRVHLCQELTCEG 187

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
             Q LE  +  + S  V ++++DS+A++  +
Sbjct: 188 LLQRLESLEEEIISKGVKLVIVDSIASVVRK 218


>gi|126658481|ref|ZP_01729629.1| circadian clock protein KaiC [Cyanothece sp. CCY0110]
 gi|126620223|gb|EAZ90944.1| circadian clock protein KaiC [Cyanothece sp. CCY0110]
          Length = 495

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 72/219 (32%), Gaps = 33/219 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG   LD   G GGF K  I+   G   +GKT L    + +  
Sbjct: 229 MRLTQRSSNA----RVSSGVATLDEMCG-GGFFKDSIILATGATGTGKTLLVSKFLEEGC 283

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
           + G        E +   +        +            LL + P++   E  L+I    
Sbjct: 284 RQGERAILFAYEESRAQLSRNAFSWGIDFEEMERKGLLKLLCTYPESAGLEDHLQIIKSE 343

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 344 ISEFKPSRIAIDSLSALA-------------RGVTNNAFRQFVIGVTGYAKQEEITGFFT 390

Query: 201 N---QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           N   Q      +      T T    +  Y  +R ++ R 
Sbjct: 391 NTTDQFMGGHSITESHISTITDTILMLQYVEIRGEMSRA 429


>gi|157823185|ref|NP_001100499.1| DNA repair protein RAD51 homolog 4 [Rattus norvegicus]
 gi|149053637|gb|EDM05454.1| RAD51-like 3 (S. cerevisiae) (predicted), isoform CRA_b [Rattus
           norvegicus]
 gi|197246126|gb|AAI69062.1| RAD51-like 3 (S. cerevisiae) [Rattus norvegicus]
          Length = 329

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 81/254 (31%), Gaps = 36/254 (14%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGT 97
             +     ++S+G   LD  L   G   G + EI G   SGKT + L   A         
Sbjct: 73  EELKTSTAILSTGIGSLDKLL-DAGLYTGELTEIVGGPGSGKTQVCLCVAANVAHSLQQN 131

Query: 98  CAFVDAEHALDSIY-----------ARKLGVDLKNLLISQPDTGEQALEIT--------- 137
             +VD+   + +               K    L+ + +       Q L++          
Sbjct: 132 VLYVDSNGGMTASRLLQLLQARTQDEEKQASALQRIQVVHSFDIFQMLDMLQDLRGTMAQ 191

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
                SG V ++++DSV A+         +          LM Q  R+L          +
Sbjct: 192 QATASSGTVKVVIVDSVTAVV------APLLGGQQREGLALMMQLARELKILARDLGVAV 245

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG-NQTRVKVVK 256
           V  N +                G +  F  S R+ +     + +     G +Q  V+++K
Sbjct: 246 VVTNHLTRD---RDSRRFKPALGRSWSFVPSTRILL----EVFEGAGTLGRSQRTVRLIK 298

Query: 257 NKMASPFKQVEFDI 270
           +       Q   DI
Sbjct: 299 SPRQPTGLQEVIDI 312


>gi|330869969|gb|EGH04678.1| circadian clock protein kaiC [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 496

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC--AFVDAEH 105
           VSSG   LD  LG GG   G    I GP  +GK+ ++L   AQ+   G        D E 
Sbjct: 250 VSSGITELDDLLG-GGIESGSSTLILGPAGTGKSLISLVFAAQAVARGERVGLFIFDEEM 308

Query: 106 ALDSIYARKLGVDLKNL 122
            L      KLG+DL+ L
Sbjct: 309 GLLFERMLKLGIDLRAL 325



 Score = 40.6 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 3/102 (2%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G  GLD  L  GG  +  +  + G   +GKTT+AL  +      G    ++        
Sbjct: 10  TGIEGLDDILA-GGLSRSHVFLLEGEPGTGKTTVALQFLKAGAAAGEISLYITLSETESE 68

Query: 110 IYARKL--GVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + +     G +L + +     T  ++L   D          +
Sbjct: 69  LRSGAASHGWELDDQINIFELTPPESLLDADHHQSLLYSSDL 110


>gi|320324589|gb|EFW80666.1| circadian clock kaiC protein [Pseudomonas syringae pv. glycinea
           str. B076]
          Length = 455

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC--AFVDAEH 105
           VSSG   LD  LG GG   G    I GP  +GK+ ++L   AQ+   G        D E 
Sbjct: 209 VSSGITELDDLLG-GGIESGSSTLILGPAGTGKSLISLVFAAQAVARGERVGLFIFDEEM 267

Query: 106 ALDSIYARKLGVDLKNL 122
            L      KLG+DL+ L
Sbjct: 268 GLLFERMLKLGIDLRAL 284


>gi|307697044|gb|ADN85988.1| disrupted meiotic cDNA 1 protein [Leymus angustus]
          Length = 160

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 61/172 (35%), Gaps = 19/172 (11%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEI 163
           +   +       L N++ ++  T E    +       +      ++++DSV AL      
Sbjct: 2   IAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR---- 57

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGN 221
               G      + + ++Q L +LT         +   NQ+    G       P+   GG+
Sbjct: 58  VDFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGH 117

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
            L   +++RL +R+           G Q   K + + +  P  +  F I  G
Sbjct: 118 VLAHAATIRLMLRKGK---------GEQRVCK-IFDALNLPEGEAVFQITTG 159


>gi|124024918|ref|YP_001014034.1| DNA repair protein RadA [Prochlorococcus marinus str. NATL1A]
 gi|123959986|gb|ABM74769.1| putative DNA repair protein RadA [Prochlorococcus marinus str.
           NATL1A]
          Length = 459

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 55/146 (37%), Gaps = 4/146 (2%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           IE +SSG   LD  LG GG   G +V I G    GK+TL L +  +             E
Sbjct: 72  IERISSGYKELDRVLG-GGLVPGSLVLIGGDPGIGKSTLILQSATEMAHHRSVLYVAAEE 130

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
            A           D ++ L    +T    LE+    +     ++ VIDS+ AL  +    
Sbjct: 131 SAQQVKLRWNRIEDAESNLHLLAETD---LEMVIKELDHLKPEVAVIDSIQALHDQNLSS 187

Query: 165 GDMGESLPGMQARLMSQALRKLTSSI 190
                +     +  + Q  ++   S+
Sbjct: 188 SPGSVAQVRECSAALQQIAKRQNISL 213


>gi|108758956|ref|YP_628977.1| hypothetical protein MXAN_0709 [Myxococcus xanthus DK 1622]
 gi|108462836|gb|ABF88021.1| conserved hypothetical protein [Myxococcus xanthus DK 1622]
          Length = 491

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 53/176 (30%), Gaps = 18/176 (10%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           + S          VS+G  GLD  LG GG     +    G   +GKT  A        + 
Sbjct: 1   MSSSEQPARQDARVSTGVPGLDAVLG-GGLVSSGVYIFVGEPGAGKTLFANQLCYHQGRA 59

Query: 95  GGTCAFVDAEHALDSIYARKLGVD--------------LKNLLISQPDTGEQALEITDML 140
           G  C +V       +     +                 +      +       LE+    
Sbjct: 60  GARCLYVTLLAESHARMLANMRDMAFFDSALLPEGVYYVSGFRTLEEHGLPGLLELLRRE 119

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
           VR+    I+V+D    L    E  G   +    +    ++  L + T+ +  S   
Sbjct: 120 VRNHNASILVLD---GLVQAQEAAGSSRDFKKFIHELQVAAGLTRFTALLLTSANG 172


>gi|321263857|ref|XP_003196646.1| RAD57 protein [Cryptococcus gattii WM276]
 gi|317463123|gb|ADV24859.1| RAD57 protein, putative [Cryptococcus gattii WM276]
          Length = 619

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 7/115 (6%)

Query: 24  QRVYGKGAIMQ-LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
              YG+GA  +  G +       + +S+G  GLD  LG GG  +G + EI G  ++GK+ 
Sbjct: 73  DEDYGRGACEKGTGEEMVGKGKGKWISTGDEGLDECLG-GGLRRGCLYEIAGESAAGKSH 131

Query: 83  LALHTIAQSQ-----KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
            AL      Q      + G    + +E  L +    +L   L      Q +   +
Sbjct: 132 FALTLALCCQLSSLTSSPGGSLILTSERELSTDRLIQLAESLLTTHEPQAEEHHE 186


>gi|304392034|ref|ZP_07373976.1| DNA repair protein RadA [Ahrensia sp. R2A130]
 gi|303296263|gb|EFL90621.1| DNA repair protein RadA [Ahrensia sp. R2A130]
          Length = 470

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 71/214 (33%), Gaps = 5/214 (2%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG I+ L       +    + S    LD   G G  P G  + + G    GK+TL +   
Sbjct: 52  KGRIIPLEPLDGDTKDSPRIISKVAELDRVTGGGFVP-GSALLLGGDPGIGKSTLLMQAS 110

Query: 89  AQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLV--RSG 144
           A   + G    +V  E A+  +   A++LGV+   + +      E  +            
Sbjct: 111 AALARAGNNVVYVSGEEAVAQVRLRAQRLGVEKSPVQLVAETNVENIVTTLQATFKGDKK 170

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
             D++V+DS+  L   A        S     A+ M +  ++  + I     +        
Sbjct: 171 RPDLVVLDSIQTLWSDAVESAPGTVSQVRASAQAMIRYAKQSGACIVLVGHVTKEGQIAG 230

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
            ++            G     +  +R    R G 
Sbjct: 231 PRVVEHMVDAVLYFEGENNHHFRILRAVKNRFGP 264


>gi|148257783|ref|YP_001242368.1| circadian clock protein KaiC [Bradyrhizobium sp. BTAi1]
 gi|146409956|gb|ABQ38462.1| circadian clock protein KaiC [Bradyrhizobium sp. BTAi1]
          Length = 584

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 70/204 (34%), Gaps = 12/204 (5%)

Query: 31  AIMQLGSQGSIFEG-IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
            +M + S G   +   E VS+G   LD  L   G+ KG  + + G   SGK+T++ H   
Sbjct: 242 TVMPITSSGLAHDAWTERVSTGITDLDDMLEGQGYYKGSSILVSGMAGSGKSTVSAHFAN 301

Query: 90  QSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLIS---QPDTGEQALEITDMLVRSG 144
              + G  C +   E +   I    R +G+DL+  +     +       L   +  + S 
Sbjct: 302 SICQAGQRCIYFALEESPQQIVRNMRSVGLDLQQWVDRGLLRFSARRPNLYGLETHLASM 361

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
             ++   D      P A +   +   +    A  +     +L   +       +F N   
Sbjct: 362 HREVKEFD------PAAVVVDPISALMGAGVAGDVHSMTLRLIDFLKSRGVTALFTNLGA 415

Query: 205 MKIGVMFGSPETTTGGNALKFYSS 228
                     + ++  +      +
Sbjct: 416 GSAETATTEMQISSLTDTWLLLYN 439



 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
          I    +G  GLD     GG P+GR   + G    GKT  A+  +  
Sbjct: 17 IAKSPTGIDGLDEV-TFGGLPQGRPTLLCGAAGCGKTLFAMTFLYN 61


>gi|320328961|gb|EFW84960.1| circadian clock kaiC protein [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 455

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC--AFVDAEH 105
           VSSG   LD  LG GG   G    I GP  +GK+ ++L   AQ+   G        D E 
Sbjct: 209 VSSGITELDDLLG-GGIESGSSTLILGPAGTGKSLISLVFAAQAVARGERVGLFIFDEEM 267

Query: 106 ALDSIYARKLGVDLKNL 122
            L      KLG+DL+ L
Sbjct: 268 GLLFERMLKLGIDLRAL 284


>gi|315037578|ref|YP_004031146.1| DNA repair protein RadA [Lactobacillus amylovorus GRL 1112]
 gi|325956060|ref|YP_004286670.1| DNA repair protein RadA [Lactobacillus acidophilus 30SC]
 gi|312275711|gb|ADQ58351.1| DNA repair protein RadA [Lactobacillus amylovorus GRL 1112]
 gi|325332625|gb|ADZ06533.1| DNA repair protein RadA [Lactobacillus acidophilus 30SC]
 gi|327182874|gb|AEA31321.1| DNA repair protein RadA [Lactobacillus amylovorus GRL 1118]
          Length = 458

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 75/231 (32%), Gaps = 22/231 (9%)

Query: 3   YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
           + KE   V K      A   IQ+  G    ++L       E  E + + S  L+  LG G
Sbjct: 33  FEKETEEVQKRSTKATASRLIQKT-GVNEPVKL--DKIKAEKEERIPTKSEELNRVLG-G 88

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G   G +V I G    GK+TL L  ++   +          E A             ++ 
Sbjct: 89  GIVPGSLVLIGGDPGIGKSTLMLQIMSDLSEKYKVLYVSGEESANQIKLRADRLGVGQSN 148

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           ++  P+T    +      +     D +VIDS+  +   +        S        + + 
Sbjct: 149 MLLYPETDMHDIR---EQINDVKPDFVVIDSIQTMNEPSLDSMTGSASQVREVTSELMK- 204

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
                  I++   I +F+     K G +        G   ++      L  
Sbjct: 205 -------IAKMNAITIFVIGHVTKEGAI-------AGPKIMEHMVDTVLYF 241


>gi|307696990|gb|ADN85961.1| disrupted meiotic cDNA 1 protein [Leymus akmolinensis]
          Length = 160

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 19/172 (11%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEI 163
           +   +       L N++ ++  T E    +       +      ++++DSV AL      
Sbjct: 2   IAERFGMDANAVLDNIIYARTYTYEHQYSLLLGLAAKMAEEPFRLLIVDSVIALFR---- 57

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGN 221
               G      + + ++Q L +LT         +   NQ+    G       P+   GG+
Sbjct: 58  VDFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGH 117

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
            L   +++RL +R+           G Q   K+       P  +  F I  G
Sbjct: 118 VLAHAATIRLMLRKGK---------GEQRVCKIFDAPNL-PEGEAIFQITTG 159


>gi|284161655|ref|YP_003400278.1| circadian clock protein, KaiC [Archaeoglobus profundus DSM 5631]
 gi|284011652|gb|ADB57605.1| putative circadian clock protein, KaiC [Archaeoglobus profundus DSM
           5631]
          Length = 471

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 60/162 (37%), Gaps = 2/162 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +S+G   LD  +  GG  +  I  I G   +GKTTLA+    ++   G    +   E 
Sbjct: 242 EKISTGIKELDE-MTNGGINRQTITVISGAAGTGKTTLAMRIAYEAALRGENVTYYAFEE 300

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
               I +R   V ++ +      +  + +    +         I +  +     +  I  
Sbjct: 301 DPAIILSRAKKVGMERIRELVEKSLIKIVFAESLKFAPEEALHITLKDLRERNTKLVIID 360

Query: 166 DM-GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            + G  L  + A    + ++ +  ++  +   ++ I++    
Sbjct: 361 SLNGAELALVGAEDKRRPIQAILRNLVANGATVILIDEFEAN 402



 Score = 41.8 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 1/77 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +  +SSG   LDI L  G  PK R   I G   SGKTT  LH + +  K      F+   
Sbjct: 2   VMRISSGIESLDIILNGGFLPK-RSYLIRGGPGSGKTTFCLHFLIEGVKNNENVLFITFG 60

Query: 105 HALDSIYARKLGVDLKN 121
              + I      + L  
Sbjct: 61  EPSEKIKENAKAIGLSP 77


>gi|260466970|ref|ZP_05813152.1| DNA repair protein RadA [Mesorhizobium opportunistum WSM2075]
 gi|259029267|gb|EEW30561.1| DNA repair protein RadA [Mesorhizobium opportunistum WSM2075]
          Length = 467

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 69/210 (32%), Gaps = 2/210 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG  + L +     E    + SG   LD A G GGF +G  + + G    GK+TL     
Sbjct: 54  KGRAVVLTTLSGDIEDAPRIVSGIGELDRATG-GGFVRGSALLVGGDPGIGKSTLLTQAA 112

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A     G    +V  E A+  I  R   + + +  +          +I   +      D+
Sbjct: 113 AALASRGHRIVYVSGEEAVAQIRLRAQRLGVADTAVELAA-ETNVEDILATIADGKRPDL 171

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +++DS+  L            +     A+ M +  +   ++I     +         ++ 
Sbjct: 172 VILDSIQTLWTDLADSAPGTVTQVRASAQAMIRYAKSTGAAIVLVGHVTKEGQIAGPRVV 231

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
                      G     Y  +R    R G 
Sbjct: 232 EHMVDGVLYFEGEGGHHYRILRTVKNRFGP 261


>gi|118431177|ref|NP_147464.2| hypothetical protein APE_0745.1 [Aeropyrum pernix K1]
 gi|116062501|dbj|BAA79722.2| hypothetical protein [Aeropyrum pernix K1]
          Length = 723

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 3/79 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E + +G  G D  L  GG P+G  V + G   +GKT  ++H   Q  + G    +V  E
Sbjct: 1   MERLRTGVEGFDP-LVAGGIPRGFFVAVVGEPGTGKTVFSIHFAYQGVREGDKVIYVTTE 59

Query: 105 HALDSIYARK--LGVDLKN 121
            + +S+  +    G+DL  
Sbjct: 60  ESRESVLKQAAMFGMDLGR 78


>gi|289628475|ref|ZP_06461429.1| circadian clock gene kaiC [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289646787|ref|ZP_06478130.1| circadian clock gene kaiC [Pseudomonas syringae pv. aesculi str.
           2250]
          Length = 494

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC--AFVDAEH 105
           VSSG   LD  LG GG   G    I GP  +GK+ ++L   AQ+   G        D E 
Sbjct: 248 VSSGITELDDLLG-GGIESGSSTLILGPAGTGKSLISLVFAAQAVARGERVGLFIFDEEM 306

Query: 106 ALDSIYARKLGVDLKNL 122
            L      KLG+DL+ L
Sbjct: 307 GLLFERMLKLGIDLRAL 323



 Score = 40.6 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 3/102 (2%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G  GLD  L  GG  +  +  + G   +GKTT+AL  +      G    ++        
Sbjct: 8   TGIEGLDDILA-GGLSRSHVFLLEGEPGTGKTTVALQFLKAGAAAGEISLYITLSETESE 66

Query: 110 IYARKL--GVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + +     G +L + +     T  ++L   D          +
Sbjct: 67  LRSGAASHGWELDDQINIFELTPPESLLDADHHQSLLYSSDL 108


>gi|254822708|ref|ZP_05227709.1| DNA repair protein RadA [Mycobacterium intracellulare ATCC 13950]
          Length = 470

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 54/144 (37%), Gaps = 8/144 (5%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           ++G   LD  LG GG   G +  + G    GK+TL L    +  ++G    ++  E +  
Sbjct: 70  TTGVGELDRVLG-GGVVPGSVTLLAGDPGVGKSTLLLEVAHRWAESGRRALYISGEESAG 128

Query: 109 SIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
            I  R  ++G     L ++        LE     + +    ++++DSV  ++   E +G 
Sbjct: 129 QIRLRADRIGCGGDELYLAAESDLHTVLE----HIATVKPALVIVDSVQTMST-TEADGV 183

Query: 167 MGESLPGMQARLMSQALRKLTSSI 190
            G             A  K     
Sbjct: 184 AGGVTQVRAVTSALTAAAKANGVA 207


>gi|154483503|ref|ZP_02025951.1| hypothetical protein EUBVEN_01207 [Eubacterium ventriosum ATCC
           27560]
 gi|149735755|gb|EDM51641.1| hypothetical protein EUBVEN_01207 [Eubacterium ventriosum ATCC
           27560]
          Length = 452

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 65/196 (33%), Gaps = 18/196 (9%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
                +  E +++G   LD  LG G  P G I+ + G    GK+TL L         G  
Sbjct: 60  NQVTADDEERITTGFGELDRVLGGGVVPGGLIL-VGGDPGIGKSTLLLQVCRNMSNNGKK 118

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
             ++  E +L  I  R     +     +     E +L+I + ++     D +VIDS+  +
Sbjct: 119 ILYISGEESLKQIKLRA--NRMGQFSDNLSLLSETSLDIIESVILETKPDAVVIDSIQTM 176

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
                       S        + Q        +++   I +FI     K G         
Sbjct: 177 LREDIGSAPGSVSQVRESTNFLMQ--------LAKGNTIPIFIVGHVTKEG-------VV 221

Query: 218 TGGNALKFYSSVRLDI 233
            G   L+      L  
Sbjct: 222 AGPRVLEHMVDTVLYF 237


>gi|124515087|gb|EAY56598.1| DNA repair protein RadA [Leptospirillum rubarum]
          Length = 461

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 71/183 (38%), Gaps = 13/183 (7%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGA--IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           + +V  S  LE+ LS+     G G    +++   G +   +E  SSG    D  LG GGF
Sbjct: 37  VPVVSASSRLESLLSE-----GDGTPRALRMEDVGKV--AVERTSSGFREFDRVLG-GGF 88

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124
            +G  + + G    GK+TLAL  +A              E                  L 
Sbjct: 89  VRGSFILLGGDPGVGKSTLALQAVAHMANGHKVLYAAGEESPEQVRMRYDRLGRKGGDLF 148

Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
             P+T    LE     V+  + + +V+DS+  +T  A+        L    A ++ +  +
Sbjct: 149 ILPETD---LEAIVREVKRLSPEFLVVDSIQTVTMGADGPSSGSVGLLRESASVLLELAK 205

Query: 185 KLT 187
           + +
Sbjct: 206 RAS 208


>gi|71734418|ref|YP_274801.1| circadian clock gene kaiC [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|298487172|ref|ZP_07005221.1| Circadian clock protein KaiC [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|71554971|gb|AAZ34182.1| circadian clock gene kaiC-like protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298158196|gb|EFH99267.1| Circadian clock protein KaiC [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|330890762|gb|EGH23423.1| circadian clock protein kaiC [Pseudomonas syringae pv. mori str.
           301020]
          Length = 494

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC--AFVDAEH 105
           VSSG   LD  LG GG   G    I GP  +GK+ ++L   AQ+   G        D E 
Sbjct: 248 VSSGITELDDLLG-GGIESGSSTLILGPAGTGKSLISLVFAAQAVARGERVGLFIFDEEM 306

Query: 106 ALDSIYARKLGVDLKNL 122
            L      KLG+DL+ L
Sbjct: 307 GLLFERMLKLGIDLRAL 323



 Score = 40.6 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 3/102 (2%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G  GLD  L  GG  +  +  + G   +GKTT+AL  +      G    ++        
Sbjct: 8   TGIEGLDDILA-GGLSRSHVFLLEGEPGTGKTTVALQFLKAGAAAGEISLYITLSETESE 66

Query: 110 IYARKL--GVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + +     G +L   +     T  ++L   D          +
Sbjct: 67  LRSGAASHGWELDEQINIFELTPPESLLDADHHQSLLYSSDL 108


>gi|332027309|gb|EGI67393.1| DNA repair protein RAD51-like protein 4 [Acromyrmex echinatior]
          Length = 271

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 14/115 (12%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGI----EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           I + +G       G + +  + +     V+ +    LD  L  GG   G++ E+ GP +S
Sbjct: 66  ILKKFG-------GVKKNATQHLAIERNVILTSVTCLDELL-RGGLYPGQLCELCGPRAS 117

Query: 79  GKTTLALHTIAQSQKT-GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
           GKT L     A      GG   + D +     +    + +  +N     P  G+Q
Sbjct: 118 GKTQLCFTIAANVASQSGGIVWYFDTKKDFCRLRYEGI-MRARNFEQKVPRNGQQ 171


>gi|146305791|ref|YP_001186256.1| DNA repair protein RadA [Pseudomonas mendocina ymp]
 gi|145573992|gb|ABP83524.1| DNA replication and repair protein RadA [Pseudomonas mendocina ymp]
          Length = 453

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 57/146 (39%), Gaps = 8/146 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E +   S+ S  LD  LG GG   G +V I G    GK+T+ L T+           +V
Sbjct: 65  VEEVPRFSTASGELDRVLG-GGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRFP-ALYV 122

Query: 102 DAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +   +   AR+LG+    L +      E  +E      R     ++VIDS+  +  
Sbjct: 123 TGEESQQQVAMRARRLGLPEDKLKVMT----ETCIESIIATARLEKPKVMVIDSIQTIFT 178

Query: 160 RAEIEGDMGESLPGMQARLMSQALRK 185
                   G +     A L+ +  ++
Sbjct: 179 EQLQSAPGGVAQVRESAALLVRFAKQ 204


>gi|330878805|gb|EGH12954.1| circadian clock protein kaiC [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 494

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC--AFVDAEH 105
           VSSG   LD  LG GG   G    I GP  +GK+ ++L   AQ+   G        D E 
Sbjct: 248 VSSGITELDDLLG-GGIESGSSTLILGPAGTGKSLISLVFAAQAVARGERVGLFIFDEEM 306

Query: 106 ALDSIYARKLGVDLKNL 122
            L      KLG+DL+ L
Sbjct: 307 GLLFERMLKLGIDLRAL 323



 Score = 40.6 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 3/102 (2%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G  GLD  L  GG  +  +  + G   +GKTT+AL  +      G    ++        
Sbjct: 8   TGIEGLDDILA-GGLSRSHVFLLEGEPGTGKTTVALQFLKAGAAAGEISLYITLSETESE 66

Query: 110 IYARKL--GVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + +     G +L   +     T  ++L   D          +
Sbjct: 67  LRSGAASHGWELDEQINIFELTPPESLLDADHHQSLLYSSDL 108


>gi|110349619|gb|ABG73284.1| putative DMC1 protein [Leucoagaricus sp. MPK5]
          Length = 88

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 12/94 (12%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           EAA   +   +  G            + + ++S+GS  +D  LG GG     I E+YG  
Sbjct: 1   EAAHKILGSSFATGI-----EVQERRKRVHIISTGSRSVDAILG-GGLMSQSITEVYGEF 54

Query: 77  SSGKTTLALHTIAQSQ------KTGGTCAFVDAE 104
            +GKT +A      +Q         G  A++D E
Sbjct: 55  RTGKTQMAHTIXVVAQLPPDLGGAAGKVAYIDTE 88


>gi|318056252|ref|NP_001187675.1| DNA repair protein XRCC3 [Ictalurus punctatus]
 gi|308323669|gb|ADO28970.1| DNA repair protein XRCC3 [Ictalurus punctatus]
          Length = 349

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 53/279 (18%), Positives = 84/279 (30%), Gaps = 44/279 (15%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK------TG 95
            E    +S     LD  L  GG P   I E+ G  ++GKT   L      Q        G
Sbjct: 76  LEPGHRLSFACPVLDGLL-HGGLPLHGITELAGESAAGKTQFGLQLSLSVQYSREHGGLG 134

Query: 96  GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD-------- 147
               ++  E        R+L      L    P    +++  +D +      D        
Sbjct: 135 AGAVYICTEDPFPIKRLRQLITQQSRLRPDVPPALIRSIRFSDNIYIEHTADLEALQRCV 194

Query: 148 --------------IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
                         +IV+DSVAAL  R+E + D        +AR +      L       
Sbjct: 195 TQRLRTLLERGLVRLIVVDSVAALF-RSEFQAD----EAIERARHLLAFSATLHRLSHTY 249

Query: 194 KCILVFINQMRMKIGVMFGSP---------ETTTGGNALKFYSSVRLDIRRVGS-IKDKD 243
              +  INQ+   +     S               G        VRL +RR    ++  +
Sbjct: 250 STPVFCINQVSDVVDGPNPSRRDYGLVESKVLPALGIIWANQVMVRLMLRRQERCLRSGE 309

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
             +  +    V    +A             +GI+  G +
Sbjct: 310 QTSAARELEVVFAPHLARASCLCGVWEEGVKGIAREGVV 348


>gi|238883696|gb|EEQ47334.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 414

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 17/135 (12%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC--AFV 101
             E +S+G   +D  LG GG   G + EI+G    GK+      ++   K   T    ++
Sbjct: 81  DSEFISTGLPSIDRELG-GGISIGEVTEIFGASGCGKSHFLFQLLSNCGKEFPTSKNIYI 139

Query: 102 DAEHALDSIYARKL--------GVDLKNLLISQPDTGEQALEITDMLVR------SGAVD 147
             E  L++   +            DL  +        E    I    +        G   
Sbjct: 140 STESFLETKRLKDFIGRNSSNIDTDLDRISYIYCQDLESQDHILFTQLPLKLDSDKGKTK 199

Query: 148 IIVIDSVAALTPRAE 162
           ++V+DS+A    R +
Sbjct: 200 LLVLDSIAQHFRRED 214


>gi|145592559|ref|YP_001154561.1| putative circadian clock protein, KaiC [Pyrobaculum arsenaticum DSM
           13514]
 gi|145284327|gb|ABP51909.1| putative circadian clock protein, KaiC [Pyrobaculum arsenaticum DSM
           13514]
          Length = 258

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV---D 102
           E + +G  GLD  LG GGF +GR   I G   + KT  AL  + Q     G        D
Sbjct: 9   ETIPTGIEGLDSVLG-GGFIRGRTYLISGETGTAKTLTALTFLIQGALKYGEPGIYISVD 67

Query: 103 AEHALDSIYARKLGVDLKNLL 123
             +      AR+ G D+++L 
Sbjct: 68  ETYEQFVEGARRFGWDIEDLR 88


>gi|307697012|gb|ADN85972.1| disrupted meiotic cDNA 1 protein [Leymus chinensis]
          Length = 160

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 19/172 (11%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEI 163
           +   +       L N++ ++  T E    +       +      ++++DSV AL      
Sbjct: 2   IAERFGVDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR---- 57

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGN 221
               G      + + ++Q L +LT         +   NQ+    G       P+   GG+
Sbjct: 58  VDFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGH 117

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
            L   +++RL +R+           G Q   K+       P  +  F I  G
Sbjct: 118 VLAHAATIRLMLRKGK---------GEQRVCKIFDAPNL-PEGEAVFQITTG 159


>gi|15678621|ref|NP_275736.1| hypothetical protein MTH593 [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|2621672|gb|AAB85099.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 233

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 32/77 (41%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  + SG  GLD  +G    P+  +  +YGP   GK+  A    A   +    C ++ A+
Sbjct: 2   IVRIPSGIRGLDELMGGASIPENTVTMVYGPPKVGKSIFAYGFAAGGAEMDEPCLYISAD 61

Query: 105 HALDSIYARKLGVDLKN 121
           + L  +      + +  
Sbjct: 62  YGLSDLKRNMAVLGMDP 78


>gi|298675006|ref|YP_003726756.1| putative circadian clock protein KaiC [Methanohalobium evestigatum
           Z-7303]
 gi|298287994|gb|ADI73960.1| putative circadian clock protein, KaiC [Methanohalobium evestigatum
           Z-7303]
          Length = 238

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+G   LD  +  GGFPKG+ + I G   +GKT   L  + ++   G  C  V  E
Sbjct: 1   MERLSTGIDELDGKIS-GGFPKGKGIVITGSSGTGKTIFGLQFLNKACHDGKKCTIVATE 59

Query: 105 HALDSIYARKLGVDLK 120
              + I      ++L 
Sbjct: 60  ETPEDILTHADVLNLS 75


>gi|11498655|ref|NP_069883.1| flagellar accessory protein FlaH [Archaeoglobus fulgidus DSM 4304]
 gi|2649536|gb|AAB90187.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 244

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 62/171 (36%), Gaps = 5/171 (2%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           +   ++SSG+  +D  LG GG P G +  I G   +GK+ L    +     +G   A+  
Sbjct: 12  KKKNILSSGNGEIDKRLG-GGIPLGSLTLIEGENDTGKSVLCQQFVYGGLMSGHNIAYYT 70

Query: 103 AEHALDS--IYARKLGVDLKNLLI--SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
            E+ + S       L +D+ +                I     +  ++  +V + +  + 
Sbjct: 71  TENTIKSFLRQMESLSLDVSDFYAWGYLRVFPVHLEGIDWSTEQMRSILNLVANHIKTIR 130

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
               I   +           + + L +L +     K IL+ ++Q   K   
Sbjct: 131 ENIAIIDSLTMFTTYSTEDDVLEFLTRLKNLCDNGKTILITLHQHAFKEDT 181


>gi|307266372|ref|ZP_07547910.1| DNA repair protein RadA [Thermoanaerobacter wiegelii Rt8.B1]
 gi|326391128|ref|ZP_08212674.1| DNA repair protein RadA [Thermoanaerobacter ethanolicus JW 200]
 gi|306918608|gb|EFN48844.1| DNA repair protein RadA [Thermoanaerobacter wiegelii Rt8.B1]
 gi|325992827|gb|EGD51273.1| DNA repair protein RadA [Thermoanaerobacter ethanolicus JW 200]
          Length = 453

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 54/148 (36%), Gaps = 8/148 (5%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + +G    D  LG GG  KG +V I G    GK+TL L              +V  E 
Sbjct: 65  ERIKTGIEEFDRVLG-GGIVKGSLVLIGGDPGIGKSTLLLQVAGNISDN-RKVLYVSGEE 122

Query: 106 ALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           ++  I   A ++  + + + +      E+     +  +     D ++IDS+  +      
Sbjct: 123 SIQQIKLRADRILKEKQQIYLLCETNIEE----IERKIDENKPDFVIIDSIQTMYTEESE 178

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSIS 191
                 S      + + +  ++   SI 
Sbjct: 179 TIPGSVSQVRQVTQRLMEIAKQKDISIF 206


>gi|227547932|ref|ZP_03977981.1| DNA repair protein RadA [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079943|gb|EEI17906.1| DNA repair protein RadA [Corynebacterium lipophiloflavum DSM 44291]
          Length = 459

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 56/152 (36%), Gaps = 6/152 (3%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG-TCAFVDAEH 105
            V SG   LD  LG G  P G +V + G    GK+TL L   ++    GG    +V AE 
Sbjct: 75  AVPSGIGELDRVLGAGVIP-GSVVLMAGEPGVGKSTLLLEVASRWAALGGRKALYVTAEE 133

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT-PRAE-I 163
           +   + +R          +      E  L++    V      ++++DSV  +  P  E +
Sbjct: 134 SAGQVRSRAERTAALQPSLFLAA--ESNLDVVFGHVEQIKPSLLIVDSVQTMHAPGVEGV 191

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
            G + +S     A         +   +     
Sbjct: 192 AGGIAQSRAVTAALTTLAKTTDVPILLVGHVT 223


>gi|316973460|gb|EFV57045.1| DNA repair protein RAD51 [Trichinella spiralis]
          Length = 272

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQKTGGT 97
             +++ I   S+G   +D  L  GG     + E+ GP  SGKT   L  +A   ++TGG 
Sbjct: 28  SDMYQNICAFSTGYEAIDRML-KGGIYSSELTELVGPVGSGKTQFCLTFVANLVKQTGGH 86

Query: 98  CAFVDAEHAL 107
             F+D     
Sbjct: 87  VLFIDTTGGF 96


>gi|206603791|gb|EDZ40271.1| DNA repair protein RadA [Leptospirillum sp. Group II '5-way CG']
          Length = 461

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 6/155 (3%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           +++   G +   +E  SSG    D  LG GGF +G  + + G    GK+TLAL  +A   
Sbjct: 60  LRMEDVGKV--AVERTSSGFREFDRVLG-GGFVRGSFILLGGDPGVGKSTLALQAVAHMA 116

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
                      E                  L   P+T    LE     V+  + +++V+D
Sbjct: 117 NRHKVLYAAGEESPEQVRMRYDRLGRNGGDLFILPETD---LEAIVREVKRLSPELLVVD 173

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
           S+  +T  A+        L    A ++ +  ++ +
Sbjct: 174 SIQTVTMGADGPSSGSVGLLRESASVLLELAKRAS 208


>gi|323528876|ref|YP_004231028.1| putative circadian clock protein, KaiC [Burkholderia sp. CCGE1001]
 gi|323385878|gb|ADX57968.1| putative circadian clock protein, KaiC [Burkholderia sp. CCGE1001]
          Length = 490

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 55/176 (31%), Gaps = 9/176 (5%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS G   LD   G GG  +G    + GP   GKT L L  +A   + G  C ++     
Sbjct: 247 RVSFGLPHLDTMFG-GGLSQGSTTTLIGPSGVGKTMLCLQFLAAGVQRGERCLYL----G 301

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL----TPRAE 162
                 R +G      +       +  L I         VD I  +++A        R  
Sbjct: 302 FYEGPQRLIGKAEAVSIRLDEAHRDGRLAIQWQPAVELPVDEIAANALATARQMGATRMV 361

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
           I+G  G     ++       L  L   +  +    +   ++ +            +
Sbjct: 362 IDGVEGFRDSALRVERFGLFLNALLHQLREAGMTTLVTEEVPLYPDYGHSRSTRVS 417


>gi|170743277|ref|YP_001771932.1| non-specific serine/threonine protein kinase [Methylobacterium sp.
           4-46]
 gi|168197551|gb|ACA19498.1| Non-specific serine/threonine protein kinase [Methylobacterium sp.
           4-46]
          Length = 501

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           G+E V +G  GLD  LG GG  +G +  + G   SGKT LA          GG  A  
Sbjct: 16  GLERVPTGIAGLDEILG-GGLFEGGVYIVQGTPGSGKTILANQVCFTHAAAGGRRALY 72



 Score = 46.0 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 45/131 (34%), Gaps = 10/131 (7%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
             V  G   LD  L  GG P      + GP   GKTTL L  +    + G    F ++  
Sbjct: 256 PKVPLGVPALDGML-DGGLPLHSTTLLAGPSGIGKTTLGLQFLGSGAEPGLLVGFHESAE 314

Query: 106 ALDSIYARKLGVDLK-------NLLISQPDT--GEQALEITDMLVRSGAVDIIVIDSVAA 156
           +L +                   L+         ++  +     VR+  V  + +D + A
Sbjct: 315 SLKAKAEALGLAAAAAIAAGEVGLMWQPATEGLIDEVCDQLLATVRNRGVRRVFLDGLDA 374

Query: 157 LTPRAEIEGDM 167
           ++  AE    +
Sbjct: 375 MSRLAEDGDRI 385


>gi|115374489|ref|ZP_01461770.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|115368468|gb|EAU67422.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
          Length = 465

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 42/119 (35%), Gaps = 13/119 (10%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC---AFVDAEH-- 105
           G  GLD  L  GG P G    + GP  SGKT L +H +A+  + G      AF DA    
Sbjct: 217 GIPGLDTMLS-GGLPMGSTTLLLGPSGSGKTLLGIHFLAEGARRGERSHYFAFYDAPRRM 275

Query: 106 -------ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
                   LD       G    +         +Q        +R   V  I +D   AL
Sbjct: 276 LAQTASVGLDLEPFIAQGSLEVSFRAPTETILDQLGVQLLAAIRERGVRRIFLDGYDAL 334


>gi|332174802|gb|AEE24056.1| DNA repair protein RadA [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 454

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 69/172 (40%), Gaps = 10/172 (5%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEV-----VSSGSLGLDIALGIGGFPKGRIVEIY 73
           A SQ +R   +G   Q G++      I++      +S    LD  LG GG   G  + I 
Sbjct: 41  ARSQPERNL-RGYAGQTGAKIETLNSIDIAELPRFTSSFKELDRVLG-GGIVPGSAILIG 98

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           G   +GK+TL L  + Q         +V  E +L  +  R   ++L N  ++     E +
Sbjct: 99  GSPGAGKSTLLLQVMCQLATE-RNALYVTGEESLQQVAMRAQRLNLPNDKLN--MLAETS 155

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           +E    L  S    I+VIDS+  +            S     A  +++  ++
Sbjct: 156 VETICELALSLKPQIMVIDSIQVMHVADVQSAPGSVSQVRESAAYLTRFAKQ 207


>gi|257866297|ref|ZP_05645950.1| DNA repair protein RadA [Enterococcus casseliflavus EC30]
 gi|257873187|ref|ZP_05652840.1| DNA repair protein RadA [Enterococcus casseliflavus EC10]
 gi|257875916|ref|ZP_05655569.1| DNA repair protein RadA [Enterococcus casseliflavus EC20]
 gi|325567619|ref|ZP_08144286.1| DNA repair protein RadA [Enterococcus casseliflavus ATCC 12755]
 gi|257800255|gb|EEV29283.1| DNA repair protein RadA [Enterococcus casseliflavus EC30]
 gi|257807351|gb|EEV36173.1| DNA repair protein RadA [Enterococcus casseliflavus EC10]
 gi|257810082|gb|EEV38902.1| DNA repair protein RadA [Enterococcus casseliflavus EC20]
 gi|325159052|gb|EGC71198.1| DNA repair protein RadA [Enterococcus casseliflavus ATCC 12755]
          Length = 456

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 66/193 (34%), Gaps = 18/193 (9%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + +    V +    L+  LG GG   G ++ I G    GK+TL L    Q    GGT  +
Sbjct: 65  VPKKEPRVQTKLAELNRVLG-GGVVPGSLILIGGDPGIGKSTLLLQVSQQLAAIGGTVLY 123

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E + + I  R     L  +       GE  +      + +   D ++IDS+  +T  
Sbjct: 124 VSGEESAEQIKMRAQ--RLGAIDTEFYLYGETDMSEISKAIENIRPDYVIIDSIQTMTQP 181

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
                    S        + +        I+++  I +FI     K G +        G 
Sbjct: 182 DITSVAGSVSQVRETTAELLK--------IAKTNGIAIFIVGHVTKEGSI-------AGP 226

Query: 221 NALKFYSSVRLDI 233
             L+      L  
Sbjct: 227 RMLEHMVDTVLYF 239


>gi|309792408|ref|ZP_07686875.1| circadian clock protein KaiC [Oscillochloris trichoides DG6]
 gi|308225563|gb|EFO79324.1| circadian clock protein KaiC [Oscillochloris trichoides DG6]
          Length = 505

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 51/150 (34%), Gaps = 25/150 (16%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT----IAQSQKTGG 96
           +F  I  + +G  G D  +  GG P+GR   + G   S KT  A       I Q  + G 
Sbjct: 1   MFIPITKLPTGIPGFDH-IANGGLPRGRTTLLSGTAGSAKTVFAAQFLAAGIIQFNEAGV 59

Query: 97  TCAFVDAEHALDSIYARKLGVDL--------KNLLISQPDTGEQA-----------LEIT 137
              F ++  AL    A   G D+           +   P    +            L   
Sbjct: 60  FVTFEESPDALRRNMA-GFGWDIATWEAEGKWAFVDVSPQPDVEEVVRGVYDLGGLLARI 118

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
              V+      +V+DS+ A+  R E    +
Sbjct: 119 TYAVQRVGAVRVVLDSLGAIFARLENNQVI 148



 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 50/131 (38%), Gaps = 13/131 (9%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            + +G+  +D   G GGF +  I+ + G   +GKT +A   +A     G        E +
Sbjct: 251 RIGTGNPDIDRMCG-GGFFRDSIILVSGATGTGKTLMATTFLAAGAAQGDRVLLFAFEES 309

Query: 107 LDSIYARKLGVDLK------------NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
            D ++    G                     +  + E  L +    ++S     + IDS+
Sbjct: 310 RDQLFRNATGWGFDFEEYEQTGQMRVVCHYPEAASLEDQLIMMKNEIQSFRPQRVAIDSL 369

Query: 155 AALTPRAEIEG 165
           +AL   + ++G
Sbjct: 370 SALERVSTMKG 380


>gi|119178701|ref|XP_001240993.1| hypothetical protein CIMG_08156 [Coccidioides immitis RS]
          Length = 436

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 77/240 (32%), Gaps = 67/240 (27%)

Query: 47  VVSSGSLGLDIALGI----------------------------GGFPKGRIVEIYGPESS 78
            VS+G   LD+AL +                            GG  +G + E+ GP +S
Sbjct: 40  SVSTGLQRLDVALALPTEPQPSPFGLGLSQRCLYDSAGGDGPAGGVQRGEVTELVGPRAS 99

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL-------------------GVDL 119
           GKT LA+   A+  ++  +  +VD    +       L                      L
Sbjct: 100 GKTVLAMSLAAEVLRSQRSVVWVDTAGPMCVSRLESLLHGKENVTEDGPSQATGRKSHLL 159

Query: 120 KNLLISQPDTGEQALEITDML---VRSGAVDIIVIDSVAALT-----PR----------A 161
           + LL   P +    + +              +IVIDS++ L      PR          +
Sbjct: 160 QRLLHFHPLSLAHLVALVSHPPRGFPPENTGLIVIDSISCLFAAEFRPRLPKRLRETKLS 219

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM--RMKIGVMFGSPETTTG 219
             E    +    +   L+   +  L     R  C +V IN+M  R K        E  +G
Sbjct: 220 RTEQAKLDKESRLYFNLIGSLVSDLRRLAVRFNCAVVVINEMASRFKPSTRPMLHEVISG 279


>gi|256960777|ref|ZP_05564948.1| DNA repair protein RadA [Enterococcus faecalis Merz96]
 gi|256951273|gb|EEU67905.1| DNA repair protein RadA [Enterococcus faecalis Merz96]
          Length = 456

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 67/193 (34%), Gaps = 18/193 (9%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + +    V +  + L+  LG GG   G +V I G    GK+TL L    Q   TGGT  +
Sbjct: 65  VPKKEPRVKTELVELNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSQQLAATGGTVLY 123

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E + + I  R     L  +  +     E  +      +     D ++IDS+  +T  
Sbjct: 124 VSGEESAEQIKLRA--ERLGTVNETFYLYAETDMYEISRAIEKLEPDYVIIDSIQTMTQP 181

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
                    S        + +        ++++  I +FI     K G +        G 
Sbjct: 182 DVTSVAGSVSQVRETTAELLK--------LAKTNGIAIFIVGHVTKEGSI-------AGP 226

Query: 221 NALKFYSSVRLDI 233
             L+      L  
Sbjct: 227 RMLEHMVDTVLYF 239


>gi|229590485|ref|YP_002872604.1| putative protein kinase [Pseudomonas fluorescens SBW25]
 gi|229362351|emb|CAY49253.1| putative protein kinase [Pseudomonas fluorescens SBW25]
          Length = 500

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA--FVDA 103
           E +SSG   LD  +G GG   G    I GP  +GK+ +++   A + + G   A    D 
Sbjct: 252 ETLSSGIAALDALMG-GGVETGSSSLILGPAGTGKSLISMIFAAAAVERGEKAALFIFDE 310

Query: 104 EHALDSIYARKLGVDLKNL 122
           E  L     + +G+DL  L
Sbjct: 311 ELGLLFERMKNMGIDLAAL 329



 Score = 39.4 bits (90), Expect = 0.78,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 3/101 (2%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           G  GLD  L  GG  +  +  + G   +GKTT+ALH +    K+G    ++        +
Sbjct: 15  GIEGLDDILA-GGLSRSHLFLLEGEPGTGKTTVALHFLQAGAKSGERSLYITLSETEREL 73

Query: 111 YARKL--GVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
                  G DL + +     T  ++L   D          +
Sbjct: 74  RQGATSHGWDLDDNIHIFELTPPESLLNADHQQSLLYSSDL 114


>gi|117927437|ref|YP_871988.1| DNA repair protein RadA [Acidothermus cellulolyticus 11B]
 gi|117647900|gb|ABK52002.1| DNA repair protein RadA [Acidothermus cellulolyticus 11B]
          Length = 460

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 54/140 (38%), Gaps = 3/140 (2%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +G    D  LG GG   G +V   G    GK+TL L   A+  +  GT  +V AE + 
Sbjct: 65  LPTGVGEFDRVLG-GGLVPGSVVLFAGEPGIGKSTLLLDAAARFTRRHGTALYVTAEESA 123

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
             + AR   +      +      E +LE  +  V +    ++++DSV  +          
Sbjct: 124 GQVRARADRIGALAPRLYLAA--ETSLEAVEAQVAAVHPALLIVDSVQTVCADGVDGTPG 181

Query: 168 GESLPGMQARLMSQALRKLT 187
           G S     A  M +  +   
Sbjct: 182 GVSQVREVAAAMIRLAKSHQ 201


>gi|46580001|ref|YP_010809.1| DNA repair protein RadA [Desulfovibrio vulgaris str. Hildenborough]
 gi|120602587|ref|YP_966987.1| DNA repair protein RadA [Desulfovibrio vulgaris DP4]
 gi|46449417|gb|AAS96068.1| DNA repair protein RadA [Desulfovibrio vulgaris str. Hildenborough]
 gi|120562816|gb|ABM28560.1| DNA replication and repair protein RadA [Desulfovibrio vulgaris
           DP4]
 gi|311234000|gb|ADP86854.1| DNA repair protein RadA [Desulfovibrio vulgaris RCH1]
          Length = 456

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 69/191 (36%), Gaps = 6/191 (3%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   LD  LG G  P G  +   G    GK+TL L        +G    ++  E +L  
Sbjct: 73  TGLEALDRVLGSGLVP-GAAILFGGEPGIGKSTLLLQVAGAVAASGRDVLYLSGEESLTQ 131

Query: 110 I--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           +   A +LGV  + LL        +  ++  +L       ++V+DSV  LT         
Sbjct: 132 LKGRAERLGVLHERLLAVA---TSRVEDVFSVLESGTPPALLVLDSVQTLTSDLAEGLPG 188

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
             S     A  +    ++  +++     +    N    ++         +  G+  + + 
Sbjct: 189 NVSQVRAVATEVVDRCKRAGTAVLLVGHVTKDGNLAGPRLLEHMVDTVVSLEGDRRQMFR 248

Query: 228 SVRLDIRRVGS 238
            +R+   R G 
Sbjct: 249 LLRVLKNRFGP 259


>gi|15678467|ref|NP_275582.1| recombinase [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2621505|gb|AAB84945.1| recombinase [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 238

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           +   I    +G  GLD    IGG+P+GR + + G   SGKT + L    QS ++G    +
Sbjct: 1   MERRISRTGTGIKGLDDI--IGGYPQGRSILVTGDPGSGKTIMGLQFAIQSARSGLKTIY 58

Query: 101 VDAEHALD--SIYARKLGVDLKNLLIS 125
           +  E       I    LG D+ +LL S
Sbjct: 59  ITTEEDETDLRIQCASLGWDITDLLES 85


>gi|69245497|ref|ZP_00603461.1| DNA repair protein RadA [Enterococcus faecium DO]
 gi|257879799|ref|ZP_05659452.1| DNA repair protein RadA [Enterococcus faecium 1,230,933]
 gi|257886076|ref|ZP_05665729.1| DNA repair protein RadA [Enterococcus faecium 1,231,501]
 gi|257891640|ref|ZP_05671293.1| DNA repair protein RadA [Enterococcus faecium 1,231,410]
 gi|257894117|ref|ZP_05673770.1| DNA repair protein RadA [Enterococcus faecium 1,231,408]
 gi|260559473|ref|ZP_05831654.1| DNA repair protein RadA [Enterococcus faecium C68]
 gi|261206624|ref|ZP_05921322.1| DNA repair protein RadA [Enterococcus faecium TC 6]
 gi|289564985|ref|ZP_06445439.1| DNA repair protein RadA [Enterococcus faecium D344SRF]
 gi|293553635|ref|ZP_06674259.1| DNA repair protein RadA [Enterococcus faecium E1039]
 gi|293564120|ref|ZP_06678526.1| DNA repair protein RadA [Enterococcus faecium E1162]
 gi|293570056|ref|ZP_06681136.1| DNA repair protein RadA [Enterococcus faecium E1071]
 gi|294614958|ref|ZP_06694849.1| DNA repair protein RadA [Enterococcus faecium E1636]
 gi|294618274|ref|ZP_06697856.1| DNA repair protein RadA [Enterococcus faecium E1679]
 gi|68195748|gb|EAN10185.1| DNA repair protein RadA [Enterococcus faecium DO]
 gi|257814027|gb|EEV42785.1| DNA repair protein RadA [Enterococcus faecium 1,230,933]
 gi|257821932|gb|EEV49062.1| DNA repair protein RadA [Enterococcus faecium 1,231,501]
 gi|257828000|gb|EEV54626.1| DNA repair protein RadA [Enterococcus faecium 1,231,410]
 gi|257830496|gb|EEV57103.1| DNA repair protein RadA [Enterococcus faecium 1,231,408]
 gi|260074572|gb|EEW62893.1| DNA repair protein RadA [Enterococcus faecium C68]
 gi|260079117|gb|EEW66810.1| DNA repair protein RadA [Enterococcus faecium TC 6]
 gi|289163192|gb|EFD11038.1| DNA repair protein RadA [Enterococcus faecium D344SRF]
 gi|291587428|gb|EFF19312.1| DNA repair protein RadA [Enterococcus faecium E1071]
 gi|291592244|gb|EFF23862.1| DNA repair protein RadA [Enterococcus faecium E1636]
 gi|291595490|gb|EFF26801.1| DNA repair protein RadA [Enterococcus faecium E1679]
 gi|291602210|gb|EFF32438.1| DNA repair protein RadA [Enterococcus faecium E1039]
 gi|291604038|gb|EFF33566.1| DNA repair protein RadA [Enterococcus faecium E1162]
          Length = 456

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 65/193 (33%), Gaps = 18/193 (9%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + +    + +    L+  LG GG   G +V I G    GK+TL L    Q    GG   +
Sbjct: 65  VPKKEPRIKTKLEELNRVLG-GGVVPGSMVLIGGDPGIGKSTLLLQVSQQLAAIGGKVLY 123

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E + + I  R     L ++        E  +      +   + D ++IDS+  +T  
Sbjct: 124 VSGEESAEQIKLRA--ERLGSINTEFYLYAETDMNEISRAIEHISPDYVIIDSIQTMTQP 181

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
                    S        + +        I+++  I +FI     K G +        G 
Sbjct: 182 DITSVAGSVSQVRETTAELLK--------IAKTNGIAIFIVGHVTKEGSI-------AGP 226

Query: 221 NALKFYSSVRLDI 233
             L+      L  
Sbjct: 227 RMLEHMVDTVLYF 239


>gi|307297210|ref|ZP_07577020.1| putative circadian clock protein, KaiC [Sphingobium
           chlorophenolicum L-1]
 gi|306877357|gb|EFN08590.1| putative circadian clock protein, KaiC [Sphingobium
           chlorophenolicum L-1]
          Length = 498

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 74/210 (35%), Gaps = 11/210 (5%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            V+SG   LD  LG GG  +G  + I GP  +GKTT+AL  +  + + G  C   + +  
Sbjct: 249 AVTSGVGALDDLLG-GGPLRGSSILITGPAGTGKTTIALQYLHAACERGEPCTIFEFDER 307

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           + ++  R     L  +            +I    +  G     V   V +   R      
Sbjct: 308 IGTLLTRAKAFGLD-VAHQIDQGRLVIQQIDPAEISPGEFAARVRHEVESRGVRMIAIDS 366

Query: 167 MGESLPGMQA-RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
           +   +  M   + +   + +L S +S+   +   +N                T  N    
Sbjct: 367 LNGYMAAMPQEQQLLLQMHELLSYLSQQGVVTFLLN------PQQGLVGSMATNLNISYI 420

Query: 226 YSSVRL--DIRRVGSIKDKDSITGNQTRVK 253
             SV L       G I+   S+  N++ + 
Sbjct: 421 ADSVILLRFFEAGGRIRKAISVIKNRSGMH 450



 Score = 47.1 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
              ++++S+G+ GLD  L  GG P   +  + G   SGKTTLAL  + +    G    ++
Sbjct: 1   MSEMQIISTGNSGLDTIL-KGGLPANHLYLLEGAPGSGKTTLALQFLREGIARGEAVLYI 59

Query: 102 DAEHALDSIYARKLG 116
                 + +      
Sbjct: 60  TLSETSEELRVVAAS 74


>gi|307636579|gb|ADN78982.1| RecA protein [Vibrio cholerae]
 gi|307636581|gb|ADN78983.1| RecA protein [Vibrio cholerae]
 gi|307636583|gb|ADN78984.1| RecA protein [Vibrio cholerae]
 gi|307636585|gb|ADN78985.1| RecA protein [Vibrio cholerae]
 gi|307636587|gb|ADN78986.1| RecA protein [Vibrio cholerae]
 gi|307636589|gb|ADN78987.1| RecA protein [Vibrio cholerae]
 gi|307636591|gb|ADN78988.1| RecA protein [Vibrio cholerae]
 gi|307636593|gb|ADN78989.1| RecA protein [Vibrio cholerae]
 gi|307636595|gb|ADN78990.1| RecA protein [Vibrio cholerae]
 gi|307636597|gb|ADN78991.1| RecA protein [Vibrio cholerae]
 gi|307636601|gb|ADN78993.1| RecA protein [Vibrio cholerae]
 gi|307636603|gb|ADN78994.1| RecA protein [Vibrio cholerae]
 gi|307636605|gb|ADN78995.1| RecA protein [Vibrio cholerae]
 gi|307636607|gb|ADN78996.1| RecA protein [Vibrio cholerae]
 gi|307636609|gb|ADN78997.1| RecA protein [Vibrio cholerae]
 gi|307636611|gb|ADN78998.1| RecA protein [Vibrio cholerae]
 gi|307636613|gb|ADN78999.1| RecA protein [Vibrio cholerae]
 gi|307636615|gb|ADN79000.1| RecA protein [Vibrio cholerae]
 gi|307636617|gb|ADN79001.1| RecA protein [Vibrio cholerae]
 gi|307636619|gb|ADN79002.1| RecA protein [Vibrio cholerae]
 gi|307636621|gb|ADN79003.1| RecA protein [Vibrio cholerae]
 gi|307636623|gb|ADN79004.1| RecA protein [Vibrio cholerae]
 gi|307636625|gb|ADN79005.1| RecA protein [Vibrio cholerae]
 gi|307636627|gb|ADN79006.1| RecA protein [Vibrio cholerae]
 gi|307636629|gb|ADN79007.1| RecA protein [Vibrio cholerae]
 gi|307636631|gb|ADN79008.1| RecA protein [Vibrio cholerae]
 gi|307636633|gb|ADN79009.1| RecA protein [Vibrio cholerae]
 gi|307636635|gb|ADN79010.1| RecA protein [Vibrio cholerae]
 gi|307636637|gb|ADN79011.1| RecA protein [Vibrio cholerae]
 gi|307636639|gb|ADN79012.1| RecA protein [Vibrio cholerae]
 gi|307636641|gb|ADN79013.1| RecA protein [Vibrio cholerae]
 gi|307636643|gb|ADN79014.1| RecA protein [Vibrio cholerae]
 gi|307636645|gb|ADN79015.1| RecA protein [Vibrio cholerae]
 gi|307636647|gb|ADN79016.1| RecA protein [Vibrio cholerae C6706]
 gi|307636649|gb|ADN79017.1| RecA protein [Vibrio cholerae]
 gi|307636651|gb|ADN79018.1| RecA protein [Vibrio cholerae]
 gi|307636653|gb|ADN79019.1| RecA protein [Vibrio cholerae]
 gi|307636655|gb|ADN79020.1| RecA protein [Vibrio cholerae]
 gi|307636657|gb|ADN79021.1| RecA protein [Vibrio cholerae]
 gi|307636659|gb|ADN79022.1| RecA protein [Vibrio cholerae]
 gi|307636661|gb|ADN79023.1| RecA protein [Vibrio cholerae]
 gi|307636663|gb|ADN79024.1| RecA protein [Vibrio cholerae]
 gi|307636665|gb|ADN79025.1| RecA protein [Vibrio cholerae]
 gi|307636667|gb|ADN79026.1| RecA protein [Vibrio cholerae]
 gi|307636669|gb|ADN79027.1| RecA protein [Vibrio cholerae]
 gi|307636671|gb|ADN79028.1| RecA protein [Vibrio cholerae]
 gi|307636673|gb|ADN79029.1| RecA protein [Vibrio cholerae]
 gi|307636675|gb|ADN79030.1| RecA protein [Vibrio cholerae]
 gi|307636677|gb|ADN79031.1| RecA protein [Vibrio cholerae]
 gi|307636679|gb|ADN79032.1| RecA protein [Vibrio cholerae]
 gi|307636681|gb|ADN79033.1| RecA protein [Vibrio cholerae]
          Length = 58

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/58 (72%), Positives = 50/58 (86%)

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           + G TCAF+DAEHALD +YA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV
Sbjct: 1   REGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIV 58


>gi|295110833|emb|CBL24786.1| KaiC. [Ruminococcus obeum A2-162]
          Length = 626

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 93/278 (33%), Gaps = 20/278 (7%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKLGVDLKN 121
            P G++  I G    GKT  A+   A            D E    +       +G  +K 
Sbjct: 328 IPFGKLTIIQGNPGEGKTYFAMMLTAACTNRKLFPNMEDIEPFNVIYQTAEDGMGDTIKP 387

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD----MGESLPGMQAR 177
            L+       + + I D        D  +  +V     R  I       +G  +   +A 
Sbjct: 388 RLVEAGADLSRVMVIDDTEEALTLSDDRIEKAVRQNQVRLVIIDPVQAFIGADVDMNRAN 447

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
            +    RKL     ++ C +V I  +    G          G  ++   ++VR  I    
Sbjct: 448 EVRPVFRKLGMIAEKTGCAIVLIGHLNKSSGTQSTYR----GLGSIDIMAAVRSLIFIGK 503

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
             KD  +       +   K+ +A P + + F +   EG  + G   ++     +  K G 
Sbjct: 504 VRKDPTTRV-----LIHEKSSLAPPGETMAFKLGDEEGFRWVGA-YEISADELLDGKEG- 556

Query: 298 WFSFKGQRLGQGRENSKIFLRENIEIA-ENIESLLRQN 334
                  +L +G +  +  L +  EI+   ++   ++ 
Sbjct: 557 --KATETKLERGAKLIRELLADKKEISIRELDEKAKEQ 592


>gi|307636599|gb|ADN78992.1| RecA protein [Vibrio cholerae]
          Length = 58

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 43/58 (74%), Positives = 50/58 (86%)

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           + G TCAF+DAEHALD IYA+KLGV++  LL+SQPDTGEQALEI D L RSGAVD+IV
Sbjct: 1   REGKTCAFIDAEHALDPIYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIV 58


>gi|126458638|ref|YP_001054916.1| putative circadian clock protein, KaiC [Pyrobaculum calidifontis
           JCM 11548]
 gi|126248359|gb|ABO07450.1| putative circadian clock protein, KaiC [Pyrobaculum calidifontis
           JCM 11548]
          Length = 257

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 64/189 (33%), Gaps = 16/189 (8%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV---D 102
           E V +G  GLD  LG GGF +GR   I G   + KT  AL  + Q     G        D
Sbjct: 8   ETVPTGIEGLDTVLG-GGFIRGRTYLISGETGTAKTLTALTFLIQGALKYGEPGIYISVD 66

Query: 103 AEHALDSIYARKLGVDLKNLL-------ISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
             +      AR+ G D++ L        +       + +   D    + ++   + D VA
Sbjct: 67  ETYEQFVEGARRFGWDIEELRAKGLLEVLVPEMDIVERIREKDPTAIAKSLVASIRDYVA 126

Query: 156 ALTPRAEIEGDMG-----ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           AL  +  +   +      +    +    +   +  +   I+ +  I   I      I   
Sbjct: 127 ALGAQRLVIDPIAPLVSLDKDVQVLREYIRVLVMSIEREIATTNIITTEIPSGSGAISRY 186

Query: 211 FGSPETTTG 219
                  TG
Sbjct: 187 GVEEFLATG 195


>gi|329850903|ref|ZP_08265748.1| DNA repair protein RadA [Asticcacaulis biprosthecum C19]
 gi|328841218|gb|EGF90789.1| DNA repair protein RadA [Asticcacaulis biprosthecum C19]
          Length = 456

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 54/155 (34%), Gaps = 10/155 (6%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G    D   G GG   G  + I G    GK+TL L   A +       A++  E A++ 
Sbjct: 75  TGIDEFDRVCG-GGVVPGSAILIAGDPGVGKSTLLLQVAANAASRNLKVAYISGEEAVEQ 133

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           I  R   + L    +      E +L      ++    D+++IDS+  L   A        
Sbjct: 134 IRGRAARMGLAKAPVDLAA--ETSLRTILEALKREKFDLVIIDSIQTLWSDAIEAAQGSV 191

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           S     A        +L     +    ++ +  + 
Sbjct: 192 SQVRACA-------GELVRLAKKHGTSVIMVGHVT 219


>gi|295396828|ref|ZP_06806960.1| DNA repair protein RadA [Aerococcus viridans ATCC 11563]
 gi|294974950|gb|EFG50645.1| DNA repair protein RadA [Aerococcus viridans ATCC 11563]
          Length = 460

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 69/194 (35%), Gaps = 11/194 (5%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E    + +    L+  LG GG  +G +V I G    GK+TL L   A+  ++ G   +V 
Sbjct: 70  EETPRIQTQLGELNRVLG-GGVVQGSLVLIGGDPGIGKSTLMLQVSAELHQSAGPVLYVS 128

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E ++  I  R   +  +               I D  +       +VIDS+  +T    
Sbjct: 129 GEESMHQIKLRADRLGFEG-ADFYVYAETDMAAIQDA-IYDLQPRFVVIDSIQTMTHEDA 186

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
                           + +        +++S+ I +FI     K G + G        + 
Sbjct: 187 TSTAGSVGQVRQTTAELMK--------LAKSQNIGIFIVGHVTKEGNIAGPRILEHMVDT 238

Query: 223 LKFYSSVRLDIRRV 236
           + ++   + D  R+
Sbjct: 239 VLYFEGEKHDTFRI 252


>gi|262200964|ref|YP_003272172.1| DNA repair protein RadA [Gordonia bronchialis DSM 43247]
 gi|262084311|gb|ACY20279.1| DNA repair protein RadA [Gordonia bronchialis DSM 43247]
          Length = 461

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 3/112 (2%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            V +G    D  LG G  P G ++ + G    GK+TL L T+      G T  ++  E +
Sbjct: 69  AVPTGIGEFDRVLGRGVVP-GSVILLAGEPGVGKSTLLLETVKHWAGLGRTALYITGEES 127

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
              +  R        +  +     E  L      V +    ++++DSV  + 
Sbjct: 128 AGQVRMRA--ERTGAVHENVYLAAESDLATILGQVDAVRPSLMIVDSVQTVV 177


>gi|23273463|gb|AAH35658.1| DMC1 protein [Homo sapiens]
          Length = 165

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 7/66 (10%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +++GS   D  LG GG     I E +G   +GKT L+      +Q        GG   F+
Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFI 159

Query: 102 DAEHAL 107
           D E+ L
Sbjct: 160 DTENTL 165


>gi|330960932|gb|EGH61192.1| KaiC [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 494

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC--AFVDAEHA 106
           SSG  GLD  LG GG   G    I GP  +GK+ ++L    Q+   G        D E  
Sbjct: 249 SSGIEGLDSLLG-GGIESGSSTLILGPAGTGKSLISLVFAVQAVARGERVGLFIFDEEMG 307

Query: 107 LDSIYARKLGVDLKNL 122
           L      KLG+DL+ L
Sbjct: 308 LLFERMLKLGIDLRAL 323



 Score = 40.2 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G  GLD  L  GG  +  +  + G   +GKTT+AL  +      G    ++        
Sbjct: 8   TGIEGLDDILS-GGLSRNHVFLLEGEPGTGKTTVALQFLQAGADLGEVSLYITLSETEHE 66

Query: 110 IYARKLGVDLK 120
           +         +
Sbjct: 67  LREGAASHGWE 77


>gi|307696966|gb|ADN85949.1| disrupted meiotic cDNA 1 protein [Leymus cinereus]
          Length = 160

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 58/172 (33%), Gaps = 19/172 (11%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEI 163
           +   +         N++ ++  T E    +       +      ++++DSV AL      
Sbjct: 2   IAERFGMDANAVPDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR---- 57

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGN 221
               G      + + ++Q L +LT         +   NQ+    G       P+   GG+
Sbjct: 58  VDFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGH 117

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
            L   +++RL +R+           G Q   K+       P  +  F I  G
Sbjct: 118 VLAHAATIRLMLRKGK---------GEQRVCKIFDAPNL-PEGEAVFQITTG 159


>gi|291616172|ref|YP_003518914.1| RadA [Pantoea ananatis LMG 20103]
 gi|291151202|gb|ADD75786.1| RadA [Pantoea ananatis LMG 20103]
          Length = 460

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 12/160 (7%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           G   + +L       E +   S+     D  LG GG   G  + I G   +GK+TL L  
Sbjct: 59  GTSRVQKLSEIS--LEALPRFSTSFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQV 115

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
           + +         +V  E +L  +  R  +LG+  +NL +    + EQ   I +       
Sbjct: 116 MCRLA-QNMKTLYVTGEESLQQVAMRAHRLGLPTENLNMLSETSIEQICLIAEQEAPQ-- 172

Query: 146 VDIIVIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
             I+VIDS+  +   A+I+   G  +     A  +++  +
Sbjct: 173 --IMVIDSIQVMH-MADIQSSPGSVAQVRETAAYLTRFAK 209


>gi|256830008|ref|YP_003158736.1| putative circadian clock protein, KaiC [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579184|gb|ACU90320.1| putative circadian clock protein, KaiC [Desulfomicrobium baculatum
           DSM 4028]
          Length = 497

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 7/118 (5%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + +S G   LD  +G GG P G  + + GP  SGKT LA   + +  + G     V  E 
Sbjct: 252 KRLSMGVPRLDEMMG-GGLPSGYSLLVAGPSGSGKTILATAFLVEGVRLGEPGVIVAFEQ 310

Query: 106 ALDSIYARKLGVDLKNLLI------SQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
                  R +   ++   I      S   + ++ ++    L+ S     +VIDS++  
Sbjct: 311 TPSQSRTRTIDELVRAGSIGLINTRSLDLSMDEVIQHLINLIHSMKATRVVIDSLSGF 368



 Score = 42.9 bits (99), Expect = 0.073,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 47/139 (33%), Gaps = 27/139 (19%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA---- 99
            I  +++G  GLD  LG GG P      I G    GKTTLA   +               
Sbjct: 6   SIARLATGVPGLDAILG-GGIPDLSFNLILGAPGCGKTTLAHQLMFAMATRERPALFFTV 64

Query: 100 ----------------FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
                           F D +    +I    LG D+         T  + L+     V +
Sbjct: 65  LGESPMKMLRYQQQFSFFDQDKISGAIRFVSLGDDVAT------GTFTEVLKRITHEVET 118

Query: 144 GAVDIIVIDSVAALTPRAE 162
            A  ++ +DS  ++   A+
Sbjct: 119 TAPALVFVDSFRSIMLEAQ 137


>gi|212709096|ref|ZP_03317224.1| hypothetical protein PROVALCAL_00129 [Providencia alcalifaciens DSM
           30120]
 gi|212688008|gb|EEB47536.1| hypothetical protein PROVALCAL_00129 [Providencia alcalifaciens DSM
           30120]
          Length = 462

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 10/146 (6%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E +   ++G    D  LG GG   G  + I G   +GK+TL L T+           +V
Sbjct: 73  LEELPRFTTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTMCLL-SRDMKTLYV 130

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+    L +    + EQ      +        ++VIDS+  +  
Sbjct: 131 TGEESLQQVAMRAHRLGLPTDTLNMLSETSIEQ----ICLTAEQEQPKLMVIDSIQVMH- 185

Query: 160 RAEIEGDMGE-SLPGMQARLMSQALR 184
            A+I+   G  +     A  +++  +
Sbjct: 186 MADIQSSPGSVAQVRETAAYLTRFAK 211


>gi|227114644|ref|ZP_03828300.1| DNA repair protein RadA [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 460

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 57/145 (39%), Gaps = 8/145 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ +         +V
Sbjct: 71  LEALPRFSTGFQEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL-SENMKTLYV 128

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +L +  +NL +    + EQ   I +         ++VIDS+  +  
Sbjct: 129 TGEESLQQVAMRAHRLNLPTQNLNMLSETSIEQICLIAE----QEQPKLMVIDSIQVMHL 184

Query: 160 RAEIEGDMGESLPGMQARLMSQALR 184
                     +     A  +++  +
Sbjct: 185 ADIQSSPGSVAQVRETATYLTRFAK 209


>gi|314940067|ref|ZP_07847250.1| DNA repair protein RadA [Enterococcus faecium TX0133a04]
 gi|314942526|ref|ZP_07849365.1| DNA repair protein RadA [Enterococcus faecium TX0133C]
 gi|314949368|ref|ZP_07852709.1| DNA repair protein RadA [Enterococcus faecium TX0082]
 gi|314952828|ref|ZP_07855800.1| DNA repair protein RadA [Enterococcus faecium TX0133A]
 gi|314993739|ref|ZP_07859084.1| DNA repair protein RadA [Enterococcus faecium TX0133B]
 gi|314994804|ref|ZP_07859936.1| DNA repair protein RadA [Enterococcus faecium TX0133a01]
 gi|313590988|gb|EFR69833.1| DNA repair protein RadA [Enterococcus faecium TX0133a01]
 gi|313591839|gb|EFR70684.1| DNA repair protein RadA [Enterococcus faecium TX0133B]
 gi|313595062|gb|EFR73907.1| DNA repair protein RadA [Enterococcus faecium TX0133A]
 gi|313598747|gb|EFR77592.1| DNA repair protein RadA [Enterococcus faecium TX0133C]
 gi|313640667|gb|EFS05247.1| DNA repair protein RadA [Enterococcus faecium TX0133a04]
 gi|313644199|gb|EFS08779.1| DNA repair protein RadA [Enterococcus faecium TX0082]
          Length = 465

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 65/193 (33%), Gaps = 18/193 (9%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + +    + +    L+  LG GG   G +V I G    GK+TL L    Q    GG   +
Sbjct: 74  VPKKEPRIKTKLEELNRVLG-GGVVPGSMVLIGGDPGIGKSTLLLQVSQQLAAIGGKVLY 132

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E + + I  R     L ++        E  +      +   + D ++IDS+  +T  
Sbjct: 133 VSGEESAEQIKLRA--ERLGSINTEFYLYAETDMNEISRAIEHISPDYVIIDSIQTMTQP 190

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
                    S        + +        I+++  I +FI     K G +        G 
Sbjct: 191 DITSVAGSVSQVRETTAELLK--------IAKTNGIAIFIVGHVTKEGSI-------AGP 235

Query: 221 NALKFYSSVRLDI 233
             L+      L  
Sbjct: 236 RMLEHMVDTVLYF 248


>gi|255513563|gb|EET89829.1| AAA ATPase [Candidatus Micrarchaeum acidiphilum ARMAN-2]
          Length = 249

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 53/144 (36%), Gaps = 21/144 (14%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
                +  +E + +G  G D   G GG P G  V +YG   +GKT   +  + ++ K G 
Sbjct: 2   ENFDPYYPVEFIKTGIPGFDRLCG-GGIPLGSQVLLYGMPGAGKTLFCMELLYRNAKFGI 60

Query: 97  TCAFVDAEHALDSIYARKLG-----VDLKNLLISQPDT---------------GEQALEI 136
              F+  E   + +    L       DL      +                   E+ L  
Sbjct: 61  PSVFISTEERKEDLIRNSLEVFSSFEDLDRFFQDKIINVEYLRGIDAIKSREEFEETLSK 120

Query: 137 TDMLVRSGAVDIIVIDSVAALTPR 160
              +++S    I+V+DSV+ L  R
Sbjct: 121 MGQIIKSNKAKIVVLDSVSNLRSR 144


>gi|15837979|ref|NP_298667.1| DNA repair protein RadA [Xylella fastidiosa 9a5c]
 gi|9106383|gb|AAF84187.1|AE003969_4 DNA repair protein [Xylella fastidiosa 9a5c]
          Length = 463

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 54/139 (38%), Gaps = 4/139 (2%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+G    D  LG GG   G +V I G    GK+TL L  +A+   T  T  +V  E +
Sbjct: 81  RISTGIGEFDRVLG-GGLVAGAVVLIGGDPGIGKSTLLLQALARMASTLPT-LYVTGEES 138

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           L  +  R + +DL   L       E  +E       S    +IV DSV  L         
Sbjct: 139 LTQVAGRAVRLDLP--LEGLNALAETGIESILQHASSARPRLIVADSVQTLWTETLTAAP 196

Query: 167 MGESLPGMQARLMSQALRK 185
              S     A  + +  ++
Sbjct: 197 GSVSQVRESAAQLVRYAKE 215


>gi|198385618|gb|ACH86154.1| RecA [Pseudomonas phage DVM-2008]
          Length = 28

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/25 (60%), Positives = 21/25 (84%)

Query: 11 DKSKALEAALSQIQRVYGKGAIMQL 35
          +K KAL AAL QI+R +GKGA+M++
Sbjct: 4  NKKKALAAALGQIERQFGKGAVMRM 28


>gi|294791456|ref|ZP_06756613.1| DNA repair protein RadA [Scardovia inopinata F0304]
 gi|294457927|gb|EFG26281.1| DNA repair protein RadA [Scardovia inopinata F0304]
          Length = 471

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 7/137 (5%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS----QKTGGTCA 99
            +  +S+G    +  LG GG   G ++ + G    GK+TL L T        Q  G    
Sbjct: 73  DVVRLSTGFEEFNRVLG-GGIVPGAVILMAGEPGIGKSTLLLETAGNISRALQTEGKKIL 131

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           ++  E +L  I  R     +  ++ +        L     L+R  +  + ++DSV  +  
Sbjct: 132 YISGEESLAQIRMRA--RRIGAVVANLLLASTTDLATVASLIRRESPALAIVDSVQTIYD 189

Query: 160 RAEIEGDMGESLPGMQA 176
           +       G +     A
Sbjct: 190 QETDGIPGGSTQVRQVA 206


>gi|90192353|gb|ABD91839.1| dmc1 [Physarum polycephalum]
          Length = 173

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVD---IIVIDSVAALTPRAEIEGDMGESLPGMQ 175
           L N++ ++  T E  LE+   +      D   +++IDS+ AL          G      +
Sbjct: 20  LDNVIYARAFTHEHQLELITEVAAKMVEDHFRLLIIDSIIALFR----VDYSGRGELAER 75

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIG---VMFGSPETTTGGNALKFYSSVRLD 232
            + + + L KLT         +V  NQ+    G   V     +   GG+ L   S  RL 
Sbjct: 76  QQKLGRMLSKLTKIAEEFNIAVVITNQVSADPGGGAVFVADAKKPIGGHVLAHASCHRLF 135

Query: 233 IR------RVGSIKDKDSITGNQTRVKVVKNKMAS 261
           +R      R+  I D  ++   +   ++    +  
Sbjct: 136 LRKGRGEQRICKIYDSPNLPEAEAVYQISDGGIID 170


>gi|238755496|ref|ZP_04616835.1| DNA repair protein radA [Yersinia ruckeri ATCC 29473]
 gi|238706252|gb|EEP98630.1| DNA repair protein radA [Yersinia ruckeri ATCC 29473]
          Length = 460

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       + +   ++G L  D  LG GG   G  + I G   +GK+TL L  + + 
Sbjct: 63  VQKLSDIS--LDELPRFTTGFLEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQVLCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
                   +V  E +L  +  R  +LG+   NL +    + EQ   I +         ++
Sbjct: 120 -SENMKTLYVTGEESLQQVAMRAHRLGLPTANLNMLSETSIEQICLIAE----QEQPKLM 174

Query: 150 VIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
           VIDS+  +   A+I+   G  +     A  +++  +
Sbjct: 175 VIDSIQVMH-MADIQSSPGSVAQVRETAAYLTRFAK 209


>gi|149926131|ref|ZP_01914393.1| predicted repair protein [Limnobacter sp. MED105]
 gi|149824949|gb|EDM84161.1| predicted repair protein [Limnobacter sp. MED105]
          Length = 460

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 64/156 (41%), Gaps = 6/156 (3%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++++L    +  +     SSG    D  LG GG   G +V + G    GK+TL L ++  
Sbjct: 58  SVIKLSEIQA--QDHPRFSSGVPEFDRVLG-GGMVPGMVVLLGGDPGIGKSTLLLQSMVT 114

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
             KT  +  +V  E +   I  R   + L++  ++   T  Q LE     + +    ++V
Sbjct: 115 LAKT-TSALYVSGEESAGQIALRAQRLGLEHTNLN-VLTEIQ-LEQIVAQLEAHKPQVLV 171

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           IDS+  L            S     A  +++  + L
Sbjct: 172 IDSIQTLYTSELSAAPGSVSQVRECASQLTRLAKAL 207


>gi|261253778|ref|ZP_05946351.1| DNA repair protein RadA [Vibrio orientalis CIP 102891]
 gi|260937169|gb|EEX93158.1| DNA repair protein RadA [Vibrio orientalis CIP 102891]
          Length = 459

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 63/170 (37%), Gaps = 16/170 (9%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   ++G    D  LG GG   G  + I G   +GK+TL L T+           +V
Sbjct: 70  LQEVPRFTTGYKEFDRVLG-GGVVPGAAILIGGNPGAGKSTLLLQTMCYLASQ-MPTLYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+  +NL +      ++  +I +         I+VIDS+  +  
Sbjct: 128 TGEESLQQVAMRASRLGLPKENLKMLSETNVDRICQIAEK----EQPKIMVIDSIQVMHV 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
                     +     A  +++          +   + VFI     K G 
Sbjct: 184 ADVQSSPGSVAQVRESATALTRYA--------KQNNVSVFIVGHVTKDGT 225


>gi|77458878|ref|YP_348384.1| circadian clock protein KaiC [Pseudomonas fluorescens Pf0-1]
 gi|77382881|gb|ABA74394.1| putative protein kinase [Pseudomonas fluorescens Pf0-1]
          Length = 505

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 3/77 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA--FVDAEH 105
           +SSG   +D  LG GG   G    I GP  +GK+ + +   A +   G   A    D E 
Sbjct: 259 LSSGIKEMDALLG-GGIETGSSTLILGPAGTGKSLITMIFAAAAVARGEKAALFIFDEEL 317

Query: 106 ALDSIYARKLGVDLKNL 122
            L       +G+DLK L
Sbjct: 318 GLLFERMNNIGIDLKAL 334



 Score = 41.4 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 3/102 (2%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G  GLD  L  GG  +  +  + G   +GKTT+ALH +    + G    ++        
Sbjct: 19  TGIEGLDDILA-GGLSRSHVFLLEGEPGTGKTTVALHFLLAGARAGERSLYITLSETERE 77

Query: 110 IYARKL--GVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           +       G +L   +     T  ++L   +          +
Sbjct: 78  LRQGAASHGWELNENIEIFELTPPESLLNAEHHQSLLYSSDL 119


>gi|218883357|ref|YP_002427739.1| hypothetical protein DKAM_0043 [Desulfurococcus kamchatkensis
           1221n]
 gi|218764973|gb|ACL10372.1| putative circadian clock protein, KaiC [Desulfurococcus
           kamchatkensis 1221n]
          Length = 260

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E V +G  GLD  L  GG PK  IV + G   +GKT LA   +    + G    +V  E
Sbjct: 13  VERVKTGIPGLDDILN-GGIPKRNIVLLSGGPGTGKTILASQFLWNGLQLGEPGIYVALE 71

Query: 105 --HALDSIYARKLGVDLKNLLIS 125
                  I  +  G D++     
Sbjct: 72  EHPVQVRINMKNFGWDVRQYEQE 94


>gi|254424012|ref|ZP_05037730.1| DNA repair protein RadA [Synechococcus sp. PCC 7335]
 gi|196191501|gb|EDX86465.1| DNA repair protein RadA [Synechococcus sp. PCC 7335]
          Length = 485

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 82/235 (34%), Gaps = 17/235 (7%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            + SG   LD  LG GG   G +V + G    GK+TL L T       G    +V AE +
Sbjct: 82  RIPSGYHELDRVLG-GGIVPGSLVLLGGDPGIGKSTLLLQTA-NQLAKGTPILYVCAEES 139

Query: 107 LDSIYARKLGVDLKNLLISQPDT------GEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
              +  R L + +     S           E  LE     + S    + VIDS+ AL   
Sbjct: 140 GQQVKLRSLRLGINQSEQSNGIQENLYLLPETNLETILEELDSLRPKVAVIDSIQALFYS 199

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
           A        +        + Q        +++ + I +FI     K G + G        
Sbjct: 200 ALTSAPGSVAQVRECTSALMQ--------LAKKENISLFIVGHVTKEGAIAGPKVLEHLV 251

Query: 221 NALKFYSSVRLDIRR-VGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274
           + + ++   R    R + S+K++   T      ++V   +       E  +   E
Sbjct: 252 DTVLYFEGDRFASHRLLRSVKNRFGATHELGVFEMVDKGLEEVLNPSELFMSNQE 306


>gi|299139258|ref|ZP_07032434.1| putative circadian clock protein, KaiC [Acidobacterium sp.
           MP5ACTX8]
 gi|298598938|gb|EFI55100.1| putative circadian clock protein, KaiC [Acidobacterium sp.
           MP5ACTX8]
          Length = 490

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 3/89 (3%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99
           +  + ++ +++G  GL+  LG GG P G++  + G   +GKTTLA+  I    + G +  
Sbjct: 2   ANHDELDRINTGIFGLNDILG-GGLPAGQMYLLEGDPGTGKTTLAMQFIMAGVQRGESSL 60

Query: 100 FVDAEHALDSIYARKL--GVDLKNLLISQ 126
           ++    +   +    L  G D++ L IS+
Sbjct: 61  YITLSESKAELEGSALSHGWDVRQLPISE 89



 Score = 38.7 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 57/173 (32%), Gaps = 3/173 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + S    LD   G GG  +G    + GP   GK+TLA+     + K G        + 
Sbjct: 249 ERIQSELPLLDRMFG-GGINRGSSTLLIGPSGCGKSTLAMVYAYAAAKRGDRAIVYAFDE 307

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
            L +   R   + +  +            ++    +  G     +   V     R  +  
Sbjct: 308 ILRTAQDRAESLGM-PVRSEIARGTLAMSQVDPAELSPGEFAWQIRRDVEEKDTRVVVID 366

Query: 166 DMGESLPGMQA-RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
            +   L  M     +S  L +L + +++   +   I      +G M    + +
Sbjct: 367 SLNGFLMAMPGENDLSLHLHELLAFLNQKGVVTFIIYTQHGLVGSMLTEVDVS 419


>gi|242775222|ref|XP_002478600.1| DNA repair protein (Rad57), putative [Talaromyces stipitatus ATCC
           10500]
 gi|218722219|gb|EED21637.1| DNA repair protein (Rad57), putative [Talaromyces stipitatus ATCC
           10500]
          Length = 532

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 69/204 (33%), Gaps = 24/204 (11%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ--- 92
           G+          +S+    LD  LG GG   G + EI G   SGKT   L+ +  +Q   
Sbjct: 93  GNNRLDLSRWNTISTLDTALDELLG-GGIATGYLTEITGESGSGKTQFLLNLLLTAQLPS 151

Query: 93  --KTGGTCAFVDAEHALDSIYARKL-----------------GVDLKNLLISQPDTGEQA 133
               G    ++  E  L +    ++                   ++ ++     +T +  
Sbjct: 152 PKGLGRKAIYISTEAPLSTPRLSQILQSHPYLSKLPANETPSLANVLSITAIDLETQDHI 211

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           L     +  S     +V+    A   RAE   +        ++  +++    L +   R 
Sbjct: 212 LNYQLPVAISRYNVGLVVIDSIAANYRAEHASN-SMQGLSARSGELAKLGHMLRNLAVRE 270

Query: 194 KCILVFINQMRMKIGVMFGSPETT 217
              +V  NQ+  +  +M   P+  
Sbjct: 271 DVAIVVANQVSDRFDMMVDVPQQP 294


>gi|19114516|ref|NP_593604.1| RecA family ATPase Rhp55 [Schizosaccharomyces pombe 972h-]
 gi|6225945|sp|O14129|RAD55_SCHPO RecName: Full=DNA repair protein rhp55; AltName: Full=RAD55 homolog
 gi|2462678|emb|CAB16734.1| RecA family ATPase Rhp55 [Schizosaccharomyces pombe]
 gi|3169551|gb|AAC17871.1| recombinational DNA repair protein Rhp55p [Schizosaccharomyces
           pombe]
          Length = 350

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 31/68 (45%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111
           S  LD A G  G  +G I E+ G    GKT+LAL   A +  +G    +V+    +    
Sbjct: 29  SKLLDDAFGGSGLKRGYISEVCGAPGMGKTSLALQITANALLSGSRVIWVETCQPIPMER 88

Query: 112 ARKLGVDL 119
            R+L  + 
Sbjct: 89  LRQLLDNH 96


>gi|332188316|ref|ZP_08390042.1| kaiA binding family protein [Sphingomonas sp. S17]
 gi|332011629|gb|EGI53708.1| kaiA binding family protein [Sphingomonas sp. S17]
          Length = 483

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 74/203 (36%), Gaps = 23/203 (11%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA--FVDA 103
           + V++    LD AL  GG  +G  V I GP  +GK+ L L  +A + K G   A    D 
Sbjct: 236 DKVTTEIAELD-ALTGGGLERGSSVLILGPAGTGKSLLVLTFVAAAVKKGEKAALFVFDE 294

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQA----------LEITDMLVRSGAVDIIVIDS 153
           E  L +  AR LG+D+  ++ +     EQ                  V       +V+DS
Sbjct: 295 EVGLLAERARGLGIDIIAMMDAGALQVEQIDAAELTPGELSARVRKCVEENGARTVVVDS 354

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           +             GE+   +    + Q L +  ++   +      +   +  + V + +
Sbjct: 355 LNGYQ-----AAMPGENALVLHMHELLQYLNRQGATTFVTIAQRGLVGNTQSPVDVTYLA 409

Query: 214 PETTTGGNALKFYSSVRLDIRRV 236
                    +  Y   R  +RR 
Sbjct: 410 DTV-----IMLRYFEARGRLRRA 427



 Score = 38.7 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 48/108 (44%), Gaps = 3/108 (2%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
            GLD  LG GG  +GR+  + G   +GKTT+A+  + +  + G    ++    + + + A
Sbjct: 2   PGLDDILG-GGLSRGRVFLLEGLPGTGKTTVAMQFLLEGARNGEKVLYLTLSESEEELRA 60

Query: 113 RKL--GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
                G  L  + I +  + +  ++         + D+ ++++   + 
Sbjct: 61  AAAAHGWALDGVEIVELISPDSLVDEKQQQSLLYSSDLELVETTRRIF 108


>gi|88858291|ref|ZP_01132933.1| RadA [Pseudoalteromonas tunicata D2]
 gi|88819908|gb|EAR29721.1| RadA [Pseudoalteromonas tunicata D2]
          Length = 454

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
              +   S+G    D  LG GG   G  + I G   +GK+T+ L T+    +   T  +V
Sbjct: 67  LSELPRFSTGFSEFDRVLG-GGVVPGSAILIGGSPGAGKSTVLLQTMCLLAEK-MTALYV 124

Query: 102 DAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +   A++L + +  L        E   ++  +        I+VIDS+  +  
Sbjct: 125 TGEESLQQVAMRAKRLNLPINKLKTLAETNVETICQLALIEKPQ----IMVIDSIQVMHM 180

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     S     A  +++  ++   +I  
Sbjct: 181 TDVQSSPGSVSQVRESAAYLTRFAKQHQVAIIM 213


>gi|327310510|ref|YP_004337407.1| putative circadian clock protein KaiC [Thermoproteus uzoniensis
           768-20]
 gi|326946989|gb|AEA12095.1| putative circadian clock protein, KaiC [Thermoproteus uzoniensis
           768-20]
          Length = 271

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 64/189 (33%), Gaps = 16/189 (8%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV---D 102
           E   +G  GLD  LG GGF +GR   I G   +GKT ++L  + Q     G        D
Sbjct: 21  ETTPTGIEGLDQLLG-GGFIRGRTYLISGETGTGKTLISLTFLLQGALKFGEPGIYVSVD 79

Query: 103 AEHALDSIYARKLGVDLKNLL-------ISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
             +    + A++ G DL+ L        +       + L   D    + ++   + D V 
Sbjct: 80  ETYEQLVMGAKRFGWDLEELRAKGLIEVLVPEMDLIERLREKDPTAIAKSLIASLRDYVV 139

Query: 156 ALTPRAEIEGDMG-----ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           AL  +  +   +      +    +    +   +  +   I  +  +   I      I   
Sbjct: 140 ALNAQRLVIDPIAPLVTLDKDIQVLREYIRVLVMGIEREIGTTNIVTTEIPSGSTAISRY 199

Query: 211 FGSPETTTG 219
                  TG
Sbjct: 200 GVEEFLATG 208


>gi|300864097|ref|ZP_07108996.1| KaiC-like protein 1 [Oscillatoria sp. PCC 6506]
 gi|300337913|emb|CBN54142.1| KaiC-like protein 1 [Oscillatoria sp. PCC 6506]
          Length = 570

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 5/104 (4%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-GGTCAFVD 102
            +    +G  GLD   G GG PKGR   + G    GKT L +  + +     G    F+ 
Sbjct: 16  QLPKCPTGIQGLDEITG-GGLPKGRPTLVCGSAGCGKTLLGMEFLVRGATEYGEPGVFIS 74

Query: 103 AEHALDSIYA--RKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
            E  ++ +      LG DL  L+  +  + +  L I    ++  
Sbjct: 75  FEETVEELTQNVTSLGWDLDRLVAEKKLSID-CLYIDPSEIQET 117



 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 74/228 (32%), Gaps = 19/228 (8%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + +SSG   LD  LG  G+ +G  + I G   +GK+T+A    A + + G  C ++  E 
Sbjct: 258 DRISSGIPRLDAMLGGEGYFRGSSILITGMAGTGKSTIAAAFAAATCQRGEKCLYLAFEE 317

Query: 106 ALDSIY--ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           A   I    R +G+DL+  +        Q   +           + +   +    P   I
Sbjct: 318 APQQILRNMRSIGMDLERYIQ---QELLQIQALRPTAHGLEVHLVQIHRWINYFQPTTVI 374

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG-GNA 222
              +           +     ++   +   +  ++  N     I        T  G  + 
Sbjct: 375 IDPISNLTLTGSLLQVKAFFMRVIDYLKSQQITVLMNN----LISGGTPLENTEIGISSL 430

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           +  +  VR+                N+    +    M    +  EF +
Sbjct: 431 MDTWLEVRVIESNGER---------NRILQVIKSRGMEHSNQVREFRL 469


>gi|310772229|ref|NP_001185575.1| DNA repair protein RAD51 homolog 4 [Gallus gallus]
          Length = 327

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 70/214 (32%), Gaps = 31/214 (14%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL-----------HT 87
             +     ++ +G+  LD  L   G   G + E+ G   SGKT + L             
Sbjct: 73  EELKSSTAILPTGNPSLDQLL-DAGLYTGEVTELAGAPGSGKTQVCLSIAASVSLGLRQH 131

Query: 88  IAQSQKTGGTCA----------FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
           +     TGG  A            D E  L+++   ++        + +     +     
Sbjct: 132 VFFLDSTGGFTASRLYQMLQARVEDKEEQLEALQRVQVVRMFDIYEMLRALHEVRDCLSQ 191

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
            +   +G +  ++IDSV+A+         +          +M Q  R+L +        +
Sbjct: 192 QVESSAGPLKAVLIDSVSAVLS------PLLGGRQSEGLAIMMQLARELKTLAKEFSVAV 245

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
           V  NQ+             +  G +  F  S R+
Sbjct: 246 VVTNQVTRDSST---GALKSALGRSWSFVPSTRV 276


>gi|227510719|ref|ZP_03940768.1| DNA repair protein RadA [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227513733|ref|ZP_03943782.1| DNA repair protein RadA [Lactobacillus buchneri ATCC 11577]
 gi|227083052|gb|EEI18364.1| DNA repair protein RadA [Lactobacillus buchneri ATCC 11577]
 gi|227189840|gb|EEI69907.1| DNA repair protein RadA [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 457

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 6/118 (5%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
            F+      +G   L+  LG GG   G ++ I G    GK+TL L    Q  ++G    +
Sbjct: 67  TFQSEPRFKTGMEELNRVLG-GGVVPGSLILIGGDPGIGKSTLMLQVSGQLSRSGKI-LY 124

Query: 101 VDAEHALDSIYARKLGVDLK-NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           V  E +   I  R   +D+    L   P+T    + +    +     D +VIDSV  +
Sbjct: 125 VSGEESASQIKMRADRLDVDSKQLYVFPETD---MNVIKSTISDMKPDAVVIDSVQTM 179


>gi|225683324|gb|EEH21608.1| DNA repair protein Rhp57 [Paracoccidioides brasiliensis Pb03]
          Length = 592

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 47/212 (22%), Positives = 71/212 (33%), Gaps = 29/212 (13%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ----- 92
           QG  F  +  +S+    LD AL  GG   G I E  G   SGKT   LH +   Q     
Sbjct: 100 QGHKFPELSFISTLDPVLDAALA-GGISTGYITEFAGESGSGKTQFLLHLLLSVQLPPPY 158

Query: 93  ---------------KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP---DTGEQAL 134
                           TG     +D    L ++        L+N+L       +T +  L
Sbjct: 159 GTSRKALYFSTESDLPTGRLSQLLDEHPLLSTLPEASARPSLENILSITTIDLETQDHIL 218

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
                +  S     +V+        RAE            +A  + +  R L +  ++  
Sbjct: 219 NYQIPVAVSRYNIGLVVIDSITANYRAE-SDSDNVPGLLARAWQLKKLGRFLRNLAAKEN 277

Query: 195 CILVFINQMRMKIGVMF----GSPETTTGGNA 222
             +V  NQ+  +I +        PE  TGG  
Sbjct: 278 IAIVVANQVSDQIQMDDVIWADEPEPPTGGYM 309


>gi|307697034|gb|ADN85983.1| disrupted meiotic cDNA 1 protein [Leymus paboanus]
          Length = 160

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 58/172 (33%), Gaps = 19/172 (11%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEI 163
           +   +         N++ ++  T E    +       +      ++++DSV AL      
Sbjct: 2   IAERFGMDANAVFDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR---- 57

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF--GSPETTTGGN 221
               G      + + ++Q L +LT         +   NQ+    G       P+   GG+
Sbjct: 58  VDFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMSITDPKKPAGGH 117

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
            L   +++RL +R+           G Q   K+       P  +  F I  G
Sbjct: 118 VLAHAATIRLMLRKGK---------GEQRVCKIFDAPNL-PEGEAVFQITTG 159


>gi|94500401|ref|ZP_01306933.1| DNA repair protein RadA [Oceanobacter sp. RED65]
 gi|94427436|gb|EAT12414.1| DNA repair protein RadA [Oceanobacter sp. RED65]
          Length = 455

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 75/232 (32%), Gaps = 20/232 (8%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
                E +   SSG+   D  LG GG   G +  + G   +GK+TL L T+    +    
Sbjct: 65  DQVSLEALPRFSSGASEFDRVLG-GGLVPGSVNLMGGHPGAGKSTLLLQTMCYLAEH-MP 122

Query: 98  CAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
             ++  E +L  +   A++L +    + +      EQ + I           ++VIDS+ 
Sbjct: 123 VLYITGEESLQQVGLRAQRLNLPTNKIQMLAETDVEQIISIAKHHEPK----VMVIDSIQ 178

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS-- 213
            +            S     A         LT    +S  +L  +  +     +      
Sbjct: 179 VMHTPGIESAPGSVSQVRESAAY-------LTRYAKQSGTVLFLVGHVTKDGSLAGPKVL 231

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
                    L+  S  R    R   IK++     N+  V  +        K 
Sbjct: 232 EHMIDCSIMLEGDSDNRFRTLRG--IKNRFGAV-NELGVFAMLEHGLKEVKN 280


>gi|261819875|ref|YP_003257981.1| DNA repair protein RadA [Pectobacterium wasabiae WPP163]
 gi|261603888|gb|ACX86374.1| DNA repair protein RadA [Pectobacterium wasabiae WPP163]
          Length = 460

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 57/145 (39%), Gaps = 8/145 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ +         +V
Sbjct: 71  LEALPRFSTGFQEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL-SENMKTLYV 128

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +L +  +NL +    + EQ   I +         ++VIDS+  +  
Sbjct: 129 TGEESLQQVAMRAHRLNLPTQNLNMLSETSIEQICLIAE----QEQPKLMVIDSIQVMHL 184

Query: 160 RAEIEGDMGESLPGMQARLMSQALR 184
                     +     A  +++  +
Sbjct: 185 ADIQSSPGSVAQVRETAAYLTRFAK 209


>gi|253686851|ref|YP_003016041.1| DNA repair protein RadA [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753429|gb|ACT11505.1| DNA repair protein RadA [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 460

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 57/145 (39%), Gaps = 8/145 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ +         +V
Sbjct: 71  LEALPRFSTGFQEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL-SENMKTLYV 128

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +L +  +NL +    + EQ   I +         ++VIDS+  +  
Sbjct: 129 TGEESLQQVAMRAHRLNLPTQNLNMLSETSIEQICLIAE----QEQPKLMVIDSIQVMHL 184

Query: 160 RAEIEGDMGESLPGMQARLMSQALR 184
                     +     A  +++  +
Sbjct: 185 ADIQSSPGSVAQVRETAAYLTRFAK 209


>gi|227326501|ref|ZP_03830525.1| DNA repair protein RadA [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 460

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 57/145 (39%), Gaps = 8/145 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ +         +V
Sbjct: 71  LEALPRFSTGFQEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL-SENMKTLYV 128

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +L +  +NL +    + EQ   I +         ++VIDS+  +  
Sbjct: 129 TGEESLQQVAMRAHRLNLPTQNLNMLSETSIEQICLIAE----QEQPKLMVIDSIQVMHL 184

Query: 160 RAEIEGDMGESLPGMQARLMSQALR 184
                     +     A  +++  +
Sbjct: 185 ADIQSSPGSVAQVRETAAYLTRFAK 209


>gi|148686665|gb|EDL18612.1| X-ray repair complementing defective repair in Chinese hamster
           cells 3 [Mus musculus]
          Length = 349

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-- 94
            + S  E  + +S G   LD  LG GG P   I  + G  S+GKT LAL      Q    
Sbjct: 71  QKESFPEQHQRLSLGCPVLDQFLG-GGLPLEGITGLAGCSSAGKTQLALQLCLAVQFPRQ 129

Query: 95  -GGT---CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
            GG      ++  E A  S    +L      L    P+   + +  ++ +    A D+
Sbjct: 130 YGGLEAGAVYICTEDAFPSKRLWQLIAQQPRLRTDAPEELIEKIRFSNHIFIEHAADV 187


>gi|315649733|ref|ZP_07902817.1| DNA repair protein RadA [Paenibacillus vortex V453]
 gi|315274921|gb|EFU38297.1| DNA repair protein RadA [Paenibacillus vortex V453]
          Length = 455

 Score = 47.1 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 54/147 (36%), Gaps = 8/147 (5%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
             + +G   L+  LG GG   G +V + G    GK+TL L    +  + G    ++  E 
Sbjct: 69  PRIQTGIAELNRVLG-GGLVPGSLVLVGGDPGIGKSTLLLQASNRLAQNGVRVLYISGEE 127

Query: 106 ALDS--IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           ++    + A +LG     L +         LE  +  + S     +VIDS+  +    E+
Sbjct: 128 SVRQTKLRADRLGALSPELFVLCETN----LESIEEAIESVQPGFVVIDSIQTVY-LPEV 182

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSI 190
               G      +       L K+    
Sbjct: 183 TSAPGSVSQVRECTARFMRLAKVKGIA 209


>gi|240102166|ref|YP_002958474.1| RecA family AAA ATPase [Thermococcus gammatolerans EJ3]
 gi|239909719|gb|ACS32610.1| RecA family AAA ATPase [Thermococcus gammatolerans EJ3]
          Length = 236

 Score = 47.1 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + +S+G  GLD  +  GG   G++  I GP  SGKTT+ +H + +  +     A+V 
Sbjct: 6   DRISTGIPGLDELI-EGGLIPGKVYLITGPPGSGKTTMGMHFLIEGARKNEKVAYVS 61


>gi|317009819|gb|ADU80399.1| hypothetical protein HPIN_06025 [Helicobacter pylori India7]
          Length = 388

 Score = 47.1 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 68/210 (32%), Gaps = 24/210 (11%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99
                IE + +G   LD  +  GG   G+IV + G   +GKT L +  +  +Q+      
Sbjct: 141 KNKPPIEKIETGINFLDTIM-DGGIELGQIVLLSGDPEAGKTLLGVQFLMHAQQKHKVTY 199

Query: 100 F---VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
           F         L+++  +   +   +  I         L      +      + +IDS   
Sbjct: 200 FGFEFSVRKHLETLKDKNFTIKGDHYFIDDQSCELNDLISQIRTLAKEGHKVFLIDS--Q 257

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPET 216
           +  +A I G   E +   +   +    R L   I              + I        T
Sbjct: 258 MKIQAPIIGKTIEEIETSKFSALGDCARNLQVLI-------------ILIIQNSKNDSYT 304

Query: 217 TTGGNALKFYSSVRLDIRRVGS-----IKD 241
            TG       + + + I R+       IKD
Sbjct: 305 PTGSRKGGHEAHLMIRIERLKKNQLPEIKD 334


>gi|84502657|ref|ZP_01000776.1| DNA repair protein RadA [Oceanicola batsensis HTCC2597]
 gi|84389052|gb|EAQ01850.1| DNA repair protein RadA [Oceanicola batsensis HTCC2597]
          Length = 454

 Score = 47.1 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 64/177 (36%), Gaps = 12/177 (6%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           KAL+ A         +G  + L    +        +SG   LD  LG G  P   I+ + 
Sbjct: 45  KALKGA---------RGRKLALTDLSAKEAPPPRTASGLEELDRVLGGGLVPASAIL-VG 94

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           G    GK+TL L   A+    G    ++  E A   +  R   + L    +      E +
Sbjct: 95  GDPGIGKSTLLLQAAARFASGGLRTFYISGEEASAQVRLRAARLGLTGAPVQLAT--ETS 152

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           L      +     D++VIDSV  +            S     A+ ++   ++  +++
Sbjct: 153 LRDIMTTLDEERPDLVVIDSVQTMWSDNVDSAPGSVSQVRATAQELTTFAKRRGAAV 209


>gi|254299082|ref|ZP_04966532.1| replicative DNA helicase [Burkholderia pseudomallei 406e]
 gi|157809227|gb|EDO86397.1| replicative DNA helicase [Burkholderia pseudomallei 406e]
          Length = 463

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 1/82 (1%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
              +  E  +V+ +G   LD AL  GG   G ++ I G    GK+ LAL   A     G 
Sbjct: 178 DARARGEPSKVIPTGFRDLDDAL-DGGMNAGELIVIAGRPGMGKSALALGVGANVAHRGN 236

Query: 97  TCAFVDAEHALDSIYARKLGVD 118
           T      E     +  R L  +
Sbjct: 237 TVLVFSLEMPGRQLTQRGLARE 258


>gi|307697066|gb|ADN85999.1| disrupted meiotic cDNA 1 protein [Leymus erianthus]
          Length = 160

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 58/172 (33%), Gaps = 19/172 (11%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEI 163
           +   +       L N++ ++  T E    +       +      ++++DSV AL      
Sbjct: 2   IAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR---- 57

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGN 221
               G      + + ++Q L +LT         +   NQ+    G       P+   GG+
Sbjct: 58  VDFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGH 117

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
                +++RL +R+           G Q   K+       P  +  F I  G
Sbjct: 118 VQAHAATIRLMLRKGK---------GEQRVCKIFDAPNL-PEGEAVFQITTG 159


>gi|298483439|ref|ZP_07001616.1| replicative DNA helicase [Bacteroides sp. D22]
 gi|295087052|emb|CBK68575.1| replicative DNA helicase [Bacteroides xylanisolvens XB1A]
 gi|298270387|gb|EFI11971.1| replicative DNA helicase [Bacteroides sp. D22]
          Length = 453

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 34/120 (28%), Gaps = 4/120 (3%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
                G+  + +G   LD     GG     ++ I    S GKT  ALH    +   G   
Sbjct: 171 AKSVNGVTGIPTGLTELDQK--TGGLQDSDLIVIAARPSVGKTAFALHLARSAAMAGNAV 228

Query: 99  AFVDAE--HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
           A    E      +        ++            Q +E         +   I +D   +
Sbjct: 229 AVYSLEMQGERLADRWLAAASNINPYRWRNGIPTSQEMENAHTAASELSGLPIYVDDSTS 288


>gi|209944596|gb|ACI96529.1| spindle D [Drosophila melanogaster]
          Length = 212

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 8/117 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           + +G    D   G GG   G +VE+ G   +GKT + L      Q         G+  F+
Sbjct: 46  ILTGKKXXDTHFG-GGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFI 104

Query: 102 DAEHALDSIYARKLGVDLK-NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           D            L + L+       P+     +      VR   +D ++   ++  
Sbjct: 105 DTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKMLQKIHYVRCPKLDQLMATVLSCH 161


>gi|84393896|ref|ZP_00992639.1| hypothetical protein V12B01_06666 [Vibrio splendidus 12B01]
 gi|84375493|gb|EAP92397.1| hypothetical protein V12B01_06666 [Vibrio splendidus 12B01]
          Length = 235

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 3/109 (2%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
              S+G   LD  L  GGFP   ++E+   +  G+  L L      Q +     F++   
Sbjct: 25  STTSTGYPQLDKQL-DGGFPTHGVIEVESQQGIGELRL-LTPYLAQQNSQKLAIFINPPG 82

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS-GAVDIIVIDS 153
            + + +    G++L+N+L+ QP     AL   +  ++S     +++  S
Sbjct: 83  KICAEFFSSQGIELENILVIQPQRDLDALWAAEQCLKSGACHSVLLWGS 131


>gi|240104131|ref|YP_002960440.1| DNA repair and recombination protein RadB [Thermococcus
           gammatolerans EJ3]
 gi|259551842|sp|C5A2F7|RADB_THEGJ RecName: Full=DNA repair and recombination protein radB
 gi|239911685|gb|ACS34576.1| DNA repair and recombination protein radB (radB) [Thermococcus
           gammatolerans EJ3]
          Length = 221

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 85/233 (36%), Gaps = 33/233 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G   LD  LG G F +G + +IYGP ++GKTTLA+ T   S   G   A+VD E   
Sbjct: 2   LSTGVKSLDELLGGG-FGEGVLTQIYGPYATGKTTLAVQTGLLS---GKKVAYVDTEGGF 57

Query: 108 DSIYARKLG--------VDLKNLLISQPDTGEQALEITDMLVR--SGAVDIIVIDSVAAL 157
                 ++           L   L+  P    +   +   L R  +    ++V+DS+ A 
Sbjct: 58  SPERLSQMASARGLDPEEALSRFLLFTPGDIREQRRVIGSLKRLITPEFSLVVVDSITAH 117

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
               E    +           + + L+ L     + +  ++ INQ+              
Sbjct: 118 YRAEEDWRSL--------TSELGKQLQVLLWIARKHRIPVLVINQVHFD---ARAERTRP 166

Query: 218 TGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
                L +     L +       DK    G +  + + +++       V F I
Sbjct: 167 VAEQTLGYRCKDILRL-------DKLPTPGKRVAI-LERHRFRPEGGMVYFKI 211


>gi|220926300|ref|YP_002501602.1| putative circadian clock protein, KaiC [Methylobacterium nodulans
           ORS 2060]
 gi|219950907|gb|ACL61299.1| putative circadian clock protein, KaiC [Methylobacterium nodulans
           ORS 2060]
          Length = 501

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 64/172 (37%), Gaps = 11/172 (6%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99
           +       +++G  GLD  LG GG+   R   + G   SGKTTLAL  +    + G  C 
Sbjct: 2   TAPPDATRIATGVPGLDYILG-GGYAANRAHLLEGRPGSGKTTLALQFLLDGARLGERCL 60

Query: 100 FVDAEHALDSIY--ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD-------IIV 150
           ++    +   +     + G  L  + + +    E +L+ +       + D        + 
Sbjct: 61  YITLSESRRELLTVTDRHGWSLDGIEVFELVPPELSLDPSQQQSLVHSSDLELGETVRMA 120

Query: 151 IDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           I  +  + P+  +   + E  L    +    + +  L S +       + ++
Sbjct: 121 IAEIDRIKPQRVVVDSLSEIRLLSQGSLRFRRQVLALRSYLLIHDTTALLLD 172



 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 24/169 (14%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF--VDAE 104
            + SG    D  LG GG  +G    + GP   GK++ AL  +  + + G        D  
Sbjct: 250 TLGSGIAAFDTLLG-GGLDQGTSTMLLGPSGVGKSSSALAFVVSALRRGERALILSFDET 308

Query: 105 HALDSIYARKLGVDLKNL----------LISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
             +    A+ LG+D++            +     +  +   I    V      +++IDS+
Sbjct: 309 SGILKRRAKGLGMDIEPYCATGQLRVEQIDPAEVSPGELTAIVRETVERDDARVVLIDSL 368

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
                          +    +  L+ Q    LT    +    L+ + Q 
Sbjct: 369 TGYH-----------NAMPEEQHLLLQMHEILTYLNQQGVTTLLVLAQH 406


>gi|89069167|ref|ZP_01156540.1| DNA repair protein RadA [Oceanicola granulosus HTCC2516]
 gi|89045340|gb|EAR51406.1| DNA repair protein RadA [Oceanicola granulosus HTCC2516]
          Length = 454

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 3/157 (1%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           +G  ++L              SG + LD  LG GG  K   + + G    GK+TL L   
Sbjct: 51  RGTPIRLTDLAQAEAEPPRTLSGVVELDRVLG-GGLVKASALLVGGDPGIGKSTLLLQAA 109

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+  + G    ++  E +   I  R   + L    +         L      + + A D+
Sbjct: 110 ARFARGGLKVLYISGEESAAQIQMRARRLGLTESPVHLAAATN--LRDILTTLEAEAPDL 167

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
            +IDS+  +            S     A  ++   ++
Sbjct: 168 AIIDSIQTMWLDTVEAAPGSVSQVRSAAHELTTFAKR 204


>gi|323700073|ref|ZP_08111985.1| DNA repair protein RadA [Desulfovibrio sp. ND132]
 gi|323460005|gb|EGB15870.1| DNA repair protein RadA [Desulfovibrio desulfuricans ND132]
          Length = 440

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 2/117 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +   +SG   LD  LG G  P G  + + G    GK+TL L       + G T  ++ 
Sbjct: 63  EHLGARTSGLPSLDHLLGEGLVP-GAAILLGGEPGIGKSTLLLQLAGSQARLGHTAVYLS 121

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
            E +L      +                 +  +   +L      +++++DSV  L  
Sbjct: 122 GEESL-PQLKARADRLGLLGPGLLAMATNKVEDGLAVLEGPNPPELLIVDSVQTLAS 177


>gi|257888693|ref|ZP_05668346.1| DNA repair protein RadA [Enterococcus faecium 1,141,733]
 gi|293378889|ref|ZP_06625044.1| DNA repair protein RadA [Enterococcus faecium PC4.1]
 gi|257824747|gb|EEV51679.1| DNA repair protein RadA [Enterococcus faecium 1,141,733]
 gi|292642430|gb|EFF60585.1| DNA repair protein RadA [Enterococcus faecium PC4.1]
          Length = 456

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 68/205 (33%), Gaps = 25/205 (12%)

Query: 36  GSQGSIFEGIEVVS-------SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           G +    +  +VV        +    L+  LG GG   G +V I G    GK+TL L   
Sbjct: 53  GEKAKPTKIADVVPKKEPRVKTKLEELNRVLG-GGVVPGSMVLIGGDPGIGKSTLLLQVS 111

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
            Q    GG   +V  E + + I  R     L ++        E  +      +   + D 
Sbjct: 112 QQLAAIGGKVLYVSGEESAEQIKLRA--ERLGSINTEFYLYAETDMNEISRAIEHISPDY 169

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           ++IDS+  +T           S        + +        I+++  I +FI     K G
Sbjct: 170 VIIDSIQTMTQPDITSVAGSVSQVRETTAELLK--------IAKTNGIAIFIVGHVTKEG 221

Query: 209 VMFGSPETTTGGNALKFYSSVRLDI 233
            +        G   L+      L  
Sbjct: 222 SI-------AGPRMLEHMVDTVLYF 239


>gi|330989647|gb|EGH87750.1| circadian oscillation regulator KaiC-like protein [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 515

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E V SG   LD  L +GG  +G    + GP  SGKTT+ L  +A +   G  C   + + 
Sbjct: 265 EPVPSGVKELDDLL-VGGPLRGTSTLVTGPAGSGKTTVTLAYLAAACARGEKCTIYEFDE 323

Query: 106 ALDSIYARKLGVDLK 120
            + ++ +R   +D++
Sbjct: 324 RIATLISRADSMDME 338



 Score = 41.8 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           +  +     +VS+G+ G D  L  GG P  R+  + G   +GKTTL L  +    K G +
Sbjct: 14  EAKMTLPRPIVSTGNAGFDSIL-KGGLPNNRLYLLEGTPGAGKTTLGLQFLLDGVKAGES 72

Query: 98  CAFVDAEHALDS 109
             ++      + 
Sbjct: 73  VLYITLSETSEE 84


>gi|330967656|gb|EGH67916.1| hypothetical protein PSYAC_24038 [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 453

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC--AFVDAEH 105
           +SSG   LD  LG GG   G    I GP  +GK+ ++L    Q+   G        D E 
Sbjct: 207 LSSGIKELDNLLG-GGIESGSSTLILGPAGTGKSLISLVFAVQAVARGERVGLFIFDEEM 265

Query: 106 ALDSIYARKLGVDLKNL 122
            L      KLG+DL+ L
Sbjct: 266 GLLFERMLKLGIDLRAL 282


>gi|330875143|gb|EGH09292.1| hypothetical protein PSYMP_09225 [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 453

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC--AFVDAEH 105
           +SSG   LD  LG GG   G    I GP  +GK+ ++L    Q+   G        D E 
Sbjct: 207 LSSGIKELDNLLG-GGIESGSSTLILGPAGTGKSLISLVFAVQAVARGERVGLFIFDEEM 265

Query: 106 ALDSIYARKLGVDLKNL 122
            L      KLG+DL+ L
Sbjct: 266 GLLFERMLKLGIDLRAL 282


>gi|300176270|emb|CBK23581.2| unnamed protein product [Blastocystis hominis]
          Length = 341

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 9/119 (7%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GG 96
           +    +++G   +D  L  GG P   I EI G  SSGK+ LA+        +       G
Sbjct: 191 QQTAFLTTGCRSIDKCL-KGGIPLHSITEITGESSSGKSQLAIQLAVNCILSEKDRGVNG 249

Query: 97  TCAFVDAEHALDSIYARKLGVD-LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
              ++D E +  +     +             D   + + I +  VRS    + ++DS+
Sbjct: 250 KALYIDTESSFSTQRLADISNAFCSRHPEFSIDQISENIFIENK-VRSYEDLVSLLDSL 307


>gi|294339292|emb|CAZ87648.1| putative RecA/RadA recombinase [Thiomonas sp. 3As]
          Length = 255

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 2/117 (1%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP-ESSGKTTLALHTIAQSQKT 94
           G   ++  G  VVSSG   LD  L  GG+P G + E+  P  S  +  L    + Q    
Sbjct: 26  GDDLAVPTG-AVVSSGWAALDAELPGGGWPCGSLTEVLSPQPSLLEWRLLGQALRQVTAD 84

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           GG    V           + LG+  + L+  Q +T  Q L +T+ LV++     ++ 
Sbjct: 85  GGNVVLVGPPKPPFLPGLQALGLQARQLIWVQTETPAQRLWVTEQLVQADTAGAVLA 141


>gi|296136341|ref|YP_003643583.1| hypothetical protein Tint_1888 [Thiomonas intermedia K12]
 gi|295796463|gb|ADG31253.1| conserved hypothetical protein [Thiomonas intermedia K12]
          Length = 255

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 2/117 (1%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP-ESSGKTTLALHTIAQSQKT 94
           G   ++  G  VVSSG   LD  L  GG+P G + E+  P  S  +  L    + Q    
Sbjct: 26  GDDLAVPTG-AVVSSGWAALDAELPGGGWPCGSLTEVLSPQPSLLEWRLLGQALRQVTAD 84

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           GG    V           + LG+  + L+  Q +T  Q L +T+ LV++     ++ 
Sbjct: 85  GGNVVLVGPPKPPFLPGLQALGLQARQLIWVQTETPAQRLWVTEQLVQADTAGAVLA 141


>gi|91202440|emb|CAJ72079.1| similar to circadian clock rhythm protein KaiC of the recA
           superfamily ATPase [Candidatus Kuenenia stuttgartiensis]
          Length = 582

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 75/244 (30%), Gaps = 14/244 (5%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
             E +S+G   LD  L   G+ +G  + + G   +GKT+L+      + + G  C +   
Sbjct: 250 STERISTGIPKLDAMLDGKGYYRGSTILVSGTAGTGKTSLSAAFADAACRRGERCLYFAF 309

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E +   I      + +      +    +       +      +       +    P+  I
Sbjct: 310 EESPSQIIRNMGSIGMNLARWVKKGLLKFHSARPSLYGLEMHLVTFHKV-INEFNPQVFI 368

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
              +       +A  +   L +L   +   K      +       +   S E ++  +  
Sbjct: 369 VDPISNLSAAGKASEVKSILTRLIDYLKMKKISTFLTDLTHFGGSLEHTSEEISSLIDTW 428

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
                + L+  R            N+    +    MA   +  EF ++  +GI       
Sbjct: 429 LLLRDIELNGER------------NRGIYILKSRGMAHSNQIQEF-LLTNQGIDLIDIYT 475

Query: 284 DLGV 287
            LG 
Sbjct: 476 GLGE 479



 Score = 44.8 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT----IAQSQKTGGTCAF 100
           +E   +G  GLD  +  GG P+GR   I G   SGKT  A+      +    + G   +F
Sbjct: 11  LEKCPTGIRGLDE-ITKGGLPRGRTTLICGGAGSGKTLFAMEFLMRGVRDYGEPGVFMSF 69

Query: 101 VDAEHALDSIYARKLGVDLKNLL 123
            +    L   +   LG DL +++
Sbjct: 70  EETPEDLAKNFV-SLGFDLPDMM 91


>gi|257899911|ref|ZP_05679564.1| DNA repair protein RadA [Enterococcus faecium Com15]
 gi|293572692|ref|ZP_06683660.1| DNA repair protein RadA [Enterococcus faecium E980]
 gi|257837823|gb|EEV62897.1| DNA repair protein RadA [Enterococcus faecium Com15]
 gi|291607278|gb|EFF36632.1| DNA repair protein RadA [Enterococcus faecium E980]
          Length = 456

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 68/205 (33%), Gaps = 25/205 (12%)

Query: 36  GSQGSIFEGIEVVS-------SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           G +    +  +VV        +    L+  LG GG   G +V I G    GK+TL L   
Sbjct: 53  GEKAKPTKIADVVPKKEPRVKTKLEELNRVLG-GGVVPGSMVLIGGDPGIGKSTLLLQVS 111

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
            Q    GG   +V  E + + I  R     L ++        E  +      +   + D 
Sbjct: 112 QQLAAIGGKVLYVSGEESAEQIKLRA--ERLGSINTEFYLYAETDMNEISRAIEHISPDY 169

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           ++IDS+  +T           S        + +        I+++  I +FI     K G
Sbjct: 170 VIIDSIQTMTQPDITSVAGSVSQVRETTAELLK--------IAKTNGIAIFIVGHVTKEG 221

Query: 209 VMFGSPETTTGGNALKFYSSVRLDI 233
            +        G   L+      L  
Sbjct: 222 SI-------AGPRMLEHMVDTVLYF 239


>gi|218709036|ref|YP_002416657.1| hypothetical protein VS_1042 [Vibrio splendidus LGP32]
 gi|218322055|emb|CAV18112.1| hypothetical protein VS_1042 [Vibrio splendidus LGP32]
          Length = 235

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 2/101 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
              S+G   LD  L  GGFP   ++E+   +  G+  L L      Q +     F++   
Sbjct: 25  STTSTGYPQLDKQL-DGGFPTHGVIEVESQQGIGELRL-LTPYLAQQNSQKLAIFINPPG 82

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
            + + +    G++L+N+L+ QP     AL   +  ++SGA 
Sbjct: 83  KICAEFFSSQGIELENILVIQPQRDLDALWAAEQCLKSGAC 123


>gi|254172813|ref|ZP_04879487.1| DNA repair and recombination protein RadB [Thermococcus sp. AM4]
 gi|214032969|gb|EEB73797.1| DNA repair and recombination protein RadB [Thermococcus sp. AM4]
          Length = 221

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 89/244 (36%), Gaps = 34/244 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G   LD  LG G F +G + +IYGP ++GKTTLA+     S   G   A+VD E   
Sbjct: 2   LSTGVKSLDELLGGG-FGEGVLTQIYGPYATGKTTLAVQAGLLS---GKMVAYVDTEGGF 57

Query: 108 DSIYARKLGVD--------LKNLLISQPDTGEQALEITD--MLVRSGAVDIIVIDSVAAL 157
                 ++           L   L+  P    +   +      + +    ++V+DS+ A 
Sbjct: 58  SPERLSQMAESRGLDPEEALSRFLLFTPGDIREQRRVIGSLKKLVTPEFGLVVVDSITAH 117

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
               E    +           + + L+ L     +++  ++ INQ+              
Sbjct: 118 YRAEEDWRSL--------TPELGKQLQVLLWIARKNRIPVLVINQVHFD---ARAERTRP 166

Query: 218 TGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277
                L +     L +       D+    G +  + + +++       V F I   +GI 
Sbjct: 167 VAEQTLGYRCKDILRL-------DRLPTPGKRVAI-LERHRFRPEGGMVYFRIT-EKGIE 217

Query: 278 FFGE 281
             GE
Sbjct: 218 DVGE 221


>gi|70730609|ref|YP_260350.1| hypothetical protein PFL_3245 [Pseudomonas fluorescens Pf-5]
 gi|68344908|gb|AAY92514.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
          Length = 562

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 3/81 (3%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA--FVDAE 104
            ++SG   +D  LG GG   G    I GP  +GK+ +++   A +   G   A    D E
Sbjct: 315 TLTSGITEMDALLG-GGIETGSSTLILGPAGTGKSLISMIFAAAAVARGEKAALFIFDEE 373

Query: 105 HALDSIYARKLGVDLKNLLIS 125
             L     R +G+DLK L  S
Sbjct: 374 LGLLFERMRNMGIDLKALQAS 394



 Score = 43.7 bits (101), Expect = 0.048,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 3/102 (2%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G  GLD  L  GG  +  +  + G   +GKTT+ALH +      G  C ++        
Sbjct: 76  TGIEGLDDILS-GGLSRSHVFLLEGEPGTGKTTVALHFLRAGAAAGERCLYITLSETERE 134

Query: 110 IYA--RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           +    +  G  L   +        ++L   +          +
Sbjct: 135 LRQGAQSHGWQLDENIHIFELIPPESLLNAEHQQSLLYSSDL 176


>gi|296166640|ref|ZP_06849067.1| DNA repair protein RadA [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295898012|gb|EFG77591.1| DNA repair protein RadA [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 491

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 46/126 (36%), Gaps = 2/126 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G +  + G    GK+TL L    +   +G    ++  E +  
Sbjct: 84  STGIGELDRVLG-GGVVPGSVTLLAGDPGVGKSTLLLKVAHRWALSGRRALYISGEESAG 142

Query: 109 SIYARKLGVDLKNLLISQPDTGEQA-LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
            I  R   +        +     ++ L      + +    ++++DSV  ++         
Sbjct: 143 QIRLRADRIGCGGKDAQEVYLAAESDLHTVLAHIAAVRPALVIVDSVQTMSTTESDGVAG 202

Query: 168 GESLPG 173
           G +   
Sbjct: 203 GVTQVR 208


>gi|257897349|ref|ZP_05677002.1| DNA repair protein RadA [Enterococcus faecium Com12]
 gi|257833914|gb|EEV60335.1| DNA repair protein RadA [Enterococcus faecium Com12]
          Length = 456

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 68/205 (33%), Gaps = 25/205 (12%)

Query: 36  GSQGSIFEGIEVVS-------SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           G +    +  +VV        +    L+  LG GG   G +V I G    GK+TL L   
Sbjct: 53  GEKAKPTKIADVVPKKEPRVKTKLEELNRVLG-GGVVPGSMVLIGGDPGIGKSTLLLQVS 111

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
            Q    GG   +V  E + + I  R     L ++        E  +      +   + D 
Sbjct: 112 QQLAAIGGKVLYVSGEESAEQIKLRA--ERLGSINTEFYLYAETDMNEISRAIEHISPDY 169

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           ++IDS+  +T           S        + +        I+++  I +FI     K G
Sbjct: 170 VIIDSIQTMTQPDITSVAGSVSQVRETTAELLK--------IAKTNGIAIFIVGHVTKEG 221

Query: 209 VMFGSPETTTGGNALKFYSSVRLDI 233
            +        G   L+      L  
Sbjct: 222 SI-------AGPRMLEHMVDTVLYF 239


>gi|254507850|ref|ZP_05119980.1| DNA repair protein RadA [Vibrio parahaemolyticus 16]
 gi|219549223|gb|EED26218.1| DNA repair protein RadA [Vibrio parahaemolyticus 16]
          Length = 459

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 62/170 (36%), Gaps = 16/170 (9%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   +SG    D  LG GG   G  + I G   +GK+TL L T+           +V
Sbjct: 70  LQEVPRFTSGFKEFDRVLG-GGVVPGAAILIGGNPGAGKSTLLLQTMCYLAAH-MPTLYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+   NL +      ++  +I +         I+VIDS+  +  
Sbjct: 128 TGEESLQQVAMRASRLGLPKDNLKMLSETNVDRICQIAEK----EQPKIMVIDSIQVMHV 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
                     +     A  +++          +   + VFI     K G 
Sbjct: 184 SDVQSSPGSVAQVRESATALTRYA--------KQNNVSVFIVGHVTKDGT 225


>gi|254435875|ref|ZP_05049382.1| DNA repair protein RadA [Nitrosococcus oceani AFC27]
 gi|207088986|gb|EDZ66258.1| DNA repair protein RadA [Nitrosococcus oceani AFC27]
          Length = 456

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 8/142 (5%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGTCAFVDAEH 105
            +S+G   LD  LG GG   G +V I G    GK+TL L  +A+      G   ++  E 
Sbjct: 71  RLSTGLSELDRVLG-GGLVTGSVVLIGGAPGIGKSTLLLQALAKMGAVQEGKVLYLTGEE 129

Query: 106 ALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           +L  I   A++LG+    + +      E+AL +     R     ++V+DS+  L      
Sbjct: 130 SLAQISLRAQRLGLGAAPVRLLADTLVERALAVA----RQERPQVMVVDSIQTLYTEQLQ 185

Query: 164 EGDMGESLPGMQARLMSQALRK 185
                 +     A  + +  ++
Sbjct: 186 SAPGTVTQVRESAGQLLRFAKQ 207


>gi|77163760|ref|YP_342285.1| DNA repair protein RadA [Nitrosococcus oceani ATCC 19707]
 gi|76882074|gb|ABA56755.1| DNA replication and repair protein RadA [Nitrosococcus oceani ATCC
           19707]
          Length = 456

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 8/142 (5%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGTCAFVDAEH 105
            +S+G   LD  LG GG   G +V I G    GK+TL L  +A+      G   ++  E 
Sbjct: 71  RLSTGLSELDRVLG-GGLVTGSVVLIGGAPGIGKSTLLLQALAKMGAVQEGKVLYLTGEE 129

Query: 106 ALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           +L  I   A++LG+    + +      E+AL +     R     ++V+DS+  L      
Sbjct: 130 SLAQISLRAQRLGLGAAPVRLLADTLVERALAVA----RQERPQVMVVDSIQTLYTEQLQ 185

Query: 164 EGDMGESLPGMQARLMSQALRK 185
                 +     A  + +  ++
Sbjct: 186 SAPGTVTQVRESAGQLLRFAKQ 207


>gi|114320254|ref|YP_741937.1| hypothetical protein Mlg_1095 [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226648|gb|ABI56447.1| conserved hypothetical protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 290

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 1/103 (0%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIY-GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           +G   L+  L  GG+P G + EI       G+  L L  +A+  + G     +   +   
Sbjct: 49  TGFPALEAVLPGGGWPAGALTEILHDRTGVGELRLVLPALARLSRAGRWVVLIAPPNLPY 108

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           +      GVDL++LL+  P T ++ L   +  +RSG    ++ 
Sbjct: 109 APALAAAGVDLRHLLLVHPRTDQEGLWAVEQALRSGTCSAVLA 151


>gi|258614225|ref|ZP_05711995.1| DNA repair protein RadA [Enterococcus faecium DO]
          Length = 406

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 65/193 (33%), Gaps = 18/193 (9%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + +    + +    L+  LG GG   G +V I G    GK+TL L    Q    GG   +
Sbjct: 15  VPKKEPRIKTKLEELNRVLG-GGVVPGSMVLIGGDPGIGKSTLLLQVSQQLAAIGGKVLY 73

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E + + I  R     L ++        E  +      +   + D ++IDS+  +T  
Sbjct: 74  VSGEESAEQIKLRA--ERLGSINTEFYLYAETDMNEISRAIEHISPDYVIIDSIQTMTQP 131

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
                    S        + +        I+++  I +FI     K G +        G 
Sbjct: 132 DITSVAGSVSQVRETTAELLK--------IAKTNGIAIFIVGHVTKEGSI-------AGP 176

Query: 221 NALKFYSSVRLDI 233
             L+      L  
Sbjct: 177 RMLEHMVDTVLYF 189


>gi|312961391|ref|ZP_07775896.1| hypothetical protein PFWH6_3311 [Pseudomonas fluorescens WH6]
 gi|311285049|gb|EFQ63625.1| hypothetical protein PFWH6_3311 [Pseudomonas fluorescens WH6]
          Length = 204

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 1/112 (0%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI-YGPESSGKTTLALHTIAQSQKTGGTCA 99
                 V  +G   LD  L  GG+P+  + EI    +  G+  L L T+A+    G    
Sbjct: 22  AAPPASVHPTGLAALDAVLPSGGWPESALSEILMAKDGIGELQLVLPTLARLSTAGERIV 81

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
            V   +       +  GVDL+ L + Q +  +    +   L       ++  
Sbjct: 82  LVAPPYTPYPHAWQNAGVDLRQLSVIQAEARDALWAVEQCLRSGSCGAVLCW 133


>gi|295425607|ref|ZP_06818294.1| DNA repair protein RadA [Lactobacillus amylolyticus DSM 11664]
 gi|295064623|gb|EFG55544.1| DNA repair protein RadA [Lactobacillus amylolyticus DSM 11664]
          Length = 458

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 72/184 (39%), Gaps = 9/184 (4%)

Query: 3   YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
           + KE   V K  A +AA SQ+ +  G    + L  +    E    + + S  L+  LG G
Sbjct: 33  FEKETQEVQKHSA-KAAPSQLIKKTGINEPVNL--EKVKAEKENRIPTESEELNRVLG-G 88

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL-KN 121
           G   G +V I G    GK+TL L  ++   K      +V  E + + I  R   + + ++
Sbjct: 89  GIVPGSLVLIGGDPGIGKSTLMLQIMSDLSKKYK-VLYVSGEESANQIKLRADRLGVGQS 147

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
            ++  P+T    +      +     D +VIDS+  +   +        S        + +
Sbjct: 148 QMLLYPETDMHDIR---ETIDDIKPDFVVIDSIQTMNEPSLDSMTGSASQVREVTSELMK 204

Query: 182 ALRK 185
             + 
Sbjct: 205 IAKM 208


>gi|238571874|ref|XP_002387121.1| hypothetical protein MPER_14345 [Moniliophthora perniciosa FA553]
 gi|215441132|gb|EEB88051.1| hypothetical protein MPER_14345 [Moniliophthora perniciosa FA553]
          Length = 95

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
          +++GS  LD  LG GG   G I E++G   +GK+ +        Q
Sbjct: 43 ITTGSKQLDALLG-GGIETGAITELFGEFRTGKSQICHTLAVTCQ 86


>gi|82703710|ref|YP_413276.1| hypothetical protein Nmul_A2597 [Nitrosospira multiformis ATCC
           25196]
 gi|82411775|gb|ABB75884.1| conserved hypothetical protein [Nitrosospira multiformis ATCC
           25196]
          Length = 240

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 4/134 (2%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE-IYGPE 76
            +LSQI+  + +  I + G          V+SSG  GLD  L  GG+    + E +   E
Sbjct: 13  LSLSQIEARF-RNRIWR-GDAWGAAAD-PVISSGFQGLDKELPGGGWSTRNLTELLLPTE 69

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
             G+  L  + + +  ++      V   +         LG+D +++++ +     + L  
Sbjct: 70  GLGEIRLLSYALEEMTRSERNILLVAPPYIPYMHAWEHLGIDGRHIVMVRVYKPAERLWA 129

Query: 137 TDMLVRSGAVDIIV 150
            +  +RS A   I+
Sbjct: 130 LEQGIRSAAFGTII 143


>gi|21312694|ref|NP_083151.1| DNA repair protein XRCC3 [Mus musculus]
 gi|20140780|sp|Q9CXE6|XRCC3_MOUSE RecName: Full=DNA repair protein XRCC3; AltName: Full=X-ray repair
           cross-complementing protein 3
 gi|12852383|dbj|BAB29391.1| unnamed protein product [Mus musculus]
          Length = 349

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 7/118 (5%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-- 94
            + S  E  + +S G   LD  LG GG P   I  + G  S+GKT LAL      Q    
Sbjct: 71  QKESFPEQHQRLSLGCPVLDQFLG-GGLPLEGITGLAGCSSAGKTQLALQLCLAVQFPRQ 129

Query: 95  -GGT---CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
            GG      ++  E A  S    +L    + L    P+   + +  ++ +    A D+
Sbjct: 130 YGGLEAGAVYICTEDAFPSKRLWQLIAQQRRLRTDAPEELIEKIRFSNHIFIEHAADV 187


>gi|325959085|ref|YP_004290551.1| hypothetical protein Metbo_1338 [Methanobacterium sp. AL-21]
 gi|325330517|gb|ADZ09579.1| hypothetical protein Metbo_1338 [Methanobacterium sp. AL-21]
          Length = 239

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 65/229 (28%), Gaps = 18/229 (7%)

Query: 45  IEVVSSGSLGLDIALGI----GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           I+   SG  G D         GG P  R   IYGP  +GKT  A        +    C +
Sbjct: 2   IKTTKSGIPGFDELTSTDEFPGGIPLSRTTLIYGPPKTGKTIFANQFTYDGLENNLPCLY 61

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           + A+  +  +    +  +       +         I+ +        +    +       
Sbjct: 62  ITADQGIKQLTTSMMEFNWFLQRYIESGDIYIIDGISQLGGVKLDDSVNYKTTTIGNPAE 121

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM---KIGVMFGSPETT 217
             I+  +G      ++            S+  S   +   NQ +M    +          
Sbjct: 122 LMIKVGIGSRYVYRKSPEF--------RSVLDSATTMFAFNQEQMVLRVLNAYIRRNNEA 173

Query: 218 TGGNALKFYSSVRLDIRRVGSIKDKDSIT---GNQTRVKVVKNKMASPF 263
            G   + +      D      +   D++    GN   ++   N+   P 
Sbjct: 174 GGAGLMTYTEGSTTDKTEQQLLSLFDNLIRMDGNTITIRSEYNQSEKPD 222


>gi|307696986|gb|ADN85959.1| disrupted meiotic cDNA 1 protein [Leymus akmolinensis]
          Length = 160

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 60/172 (34%), Gaps = 19/172 (11%)

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEI 163
           +   +       L N++ ++  T E    +       +      ++++DSV AL      
Sbjct: 2   IAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRV--D 59

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGN 221
               GE     + + ++Q L +LT         +   NQ+    G       P+   GG+
Sbjct: 60  FSSRGE--LAERQQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGH 117

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
            L   +++RL +R+           G Q   K+       P  +  F I  G
Sbjct: 118 VLAHAATIRLMLRKGK---------GEQRVCKIFDAPNL-PEGEAVFQITTG 159


>gi|158422157|ref|YP_001523449.1| DNA repair protein RadA [Azorhizobium caulinodans ORS 571]
 gi|158329046|dbj|BAF86531.1| DNA repair protein [Azorhizobium caulinodans ORS 571]
          Length = 471

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 63/312 (20%), Positives = 104/312 (33%), Gaps = 33/312 (10%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           N + +   L A +   QR   KG  + L +     +    + SG   LD   G G  P G
Sbjct: 31  NTISEETNLAATVPAAQRAGRKGRAVPLETLHGEAKPAPRLVSGIGELDRVAGGGFVP-G 89

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127
            IV + G    GK+TL +   A   K G    +V  E A+D +  R   + L    ++  
Sbjct: 90  SIVLLGGDPGIGKSTLLVQASAALAKAGHRVIYVSGEEAVDQVRMRAGRLGLAQAPVALA 149

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
                A  I        AV  +VIDS+  L   +        +     A+L       L 
Sbjct: 150 A-ETNAENILATFSAGAAVQFVVIDSIQTLWSDSVESAPGTVTQVRTSAQL-------LV 201

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
               +S   ++ +  +     +         G   ++            G+         
Sbjct: 202 RYAKQSGAAVILVGHVTKDGQI--------AGPRVVEHMVDAVFSFEGDGA--------- 244

Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307
           NQ R+   +     P  ++    M G G+S      +L +       +GA     G  + 
Sbjct: 245 NQFRILRAQKNRFGPTDEIGVFEMTGTGLSQVPNPSELFLSH---RDAGA----PGTAVF 297

Query: 308 QGRENSKIFLRE 319
            G E ++  L E
Sbjct: 298 AGMEGTRPLLME 309


>gi|285017729|ref|YP_003375440.1| DNA repair protein rada homolog (DNA repair protein sms homolog)
           [Xanthomonas albilineans GPE PC73]
 gi|283472947|emb|CBA15452.1| probable dna repair protein rada homolog (dna repair protein sms
           homolog) [Xanthomonas albilineans]
          Length = 466

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 55/139 (39%), Gaps = 4/139 (2%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+G    D  LG GG  +G +V I G    GK+TL L  +A+   T     +V  E +
Sbjct: 82  RVSTGIGEFDRVLG-GGLVEGAVVLIGGDPGIGKSTLLLQALAKMAST-LPVLYVTGEES 139

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           L  +  R + +DL   L       E  +E       +    ++V DSV  L   A     
Sbjct: 140 LAQVAGRAVRLDLP--LDGLNALAETGIEHILQHASAARPKLMVADSVQTLWTEALSAAP 197

Query: 167 MGESLPGMQARLMSQALRK 185
              S     A  + +  ++
Sbjct: 198 GSVSQVRESAARLVRYAKE 216


>gi|225716376|gb|ACO14034.1| DNA repair protein RAD51 homolog 4 [Esox lucius]
          Length = 335

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 80/254 (31%), Gaps = 36/254 (14%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL-----------HT 87
             +     +VS+G+  LD  L   G   G + E+ G   SGKT +              +
Sbjct: 73  EDLISSTAIVSTGNSSLDKLL-DSGLYTGELTELAGGPGSGKTQVCFGVTVNISYQLKQS 131

Query: 88  IAQSQKTGGTCA---------FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           +     TGG  A             E  ++++   ++        +       Q   +  
Sbjct: 132 VIYIDSTGGLSASRLLQILQKICKLEEQMEALQRIQVYRVFDIFSLIDCLQSLQCTGLQR 191

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
                G+V  +++DSV+A+         +          +M Q    L + +      ++
Sbjct: 192 ASAGGGSVKAVIVDSVSAVIS------PILGGKQNEGMSMMMQVAGVLKTIVKDFNVAVL 245

Query: 199 FINQMRMKIGVMFGSPETTTG-GNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
             N +         +     G G +       R+ ++R  S     S   +     + K+
Sbjct: 246 VTNTVTRD-----CNGNLKAGLGQSWSHVPRTRIILQRFES---PGSTCSSLRTATLAKS 297

Query: 258 KMASPFKQVEFDIM 271
                  + EFD+ 
Sbjct: 298 SRQPCLLKEEFDLQ 311


>gi|171186444|ref|YP_001795363.1| putative circadian clock protein, KaiC [Thermoproteus neutrophilus
           V24Sta]
 gi|170935656|gb|ACB40917.1| putative circadian clock protein, KaiC [Thermoproteus neutrophilus
           V24Sta]
          Length = 258

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 4/81 (4%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV---D 102
           E V +G  GLD  LG GGF +GR   I G   + KT  AL  + Q     G        D
Sbjct: 9   ETVPTGVEGLDTVLG-GGFIRGRTYLISGETGTAKTLTALTFLIQGALKYGEPGIYISVD 67

Query: 103 AEHALDSIYARKLGVDLKNLL 123
             +      AR+ G D++ L 
Sbjct: 68  ETYEQFVEGARRFGWDIEELR 88


>gi|304315222|ref|YP_003850369.1| KaiC-related protein [Methanothermobacter marburgensis str.
           Marburg]
 gi|302588681|gb|ADL59056.1| KaiC-related protein [Methanothermobacter marburgensis str.
           Marburg]
          Length = 469

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 63/187 (33%), Gaps = 3/187 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E+VS+G   LD  LG GG  +G  V I G   +GKTT+      ++ + G  C +   E 
Sbjct: 244 ELVSTGIPDLDDMLG-GGVYRGSSVLISGTTGAGKTTVLSKFAYEACRRGERCLYFANEE 302

Query: 106 ALDSIY--ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
             D I      +G+ LK+    +            +      +  +V+D          +
Sbjct: 303 PADQIIRNMESVGIQLKDHTDDKLMIHSDRPTSLGLESHLTEMQDLVMDFKPDTVLVDPV 362

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
            G      P  +         + T  +       +F   +R  +       E ++  +  
Sbjct: 363 TGLAAAGGPSNRVSNAKNLFIRFTDFLKSRGVTSLFTYLIRSPVTATQTELEISSLIDTW 422

Query: 224 KFYSSVR 230
                VR
Sbjct: 423 IVLEHVR 429



 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 42 FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
          F  IE   +G  GLD+  G GGFP+GR   IYG   +GKT +A+  +       G
Sbjct: 3  FRSIEKSPTGIKGLDMVTG-GGFPQGRNTLIYGGPGTGKTFIAVEFLLNGASYYG 56


>gi|302340759|ref|YP_003805965.1| DNA repair protein RadA [Spirochaeta smaragdinae DSM 11293]
 gi|301637944|gb|ADK83371.1| DNA repair protein RadA [Spirochaeta smaragdinae DSM 11293]
          Length = 460

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 8/116 (6%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
             SSG   LD  LG GG  +G  V I G    GK+TL +  +A     G    ++  E +
Sbjct: 71  RFSSGIAELDRVLG-GGVMRGSAVLIGGEPGIGKSTLMMQLVAS-ALPGTRALYISGEES 128

Query: 107 LDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
              I  R  +LG+D   + +      ++ + +           ++V+DS+  L  +
Sbjct: 129 AAQIKMRSDRLGLDASAVDLLCESDLDRIMSVLRKTRPQ----LVVMDSIQTLISQ 180


>gi|288817636|ref|YP_003431983.1| DNA repair protein [Hydrogenobacter thermophilus TK-6]
 gi|288787035|dbj|BAI68782.1| DNA repair protein [Hydrogenobacter thermophilus TK-6]
 gi|308751234|gb|ADO44717.1| DNA repair protein RadA [Hydrogenobacter thermophilus TK-6]
          Length = 442

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 91/230 (39%), Gaps = 15/230 (6%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            EG+E  S G    D A+G GG   G+++ + G    GK+TL L    +  +  G+  +V
Sbjct: 59  HEGLERKSVGFENFDRAIG-GGMVPGQVMLLAGEPGIGKSTLLLQVSDRYAQNYGSVLYV 117

Query: 102 DAEHALDSIYARKLGVDLKNL-LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
             E +   I  R     +K+  ++  P+T    LE    + +     ++V+DS+  L   
Sbjct: 118 SGEESGSQIAVRGRRTGVKSKDVLVLPET---RLEAVLDVAQELNPQLLVVDSIQTLYTE 174

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
           +        S     A  +++          +S+ I VF+     K G + G        
Sbjct: 175 SLSSSPGSVSQVRECAFRITEFC--------KSRDIPVFLVGQITKEGDIAGPKVLEHLV 226

Query: 221 NALKFYSSVRLDIRRVGS-IKDKDSITGNQTRVKVVKNKMAS-PFKQVEF 268
           + + ++   R +  R+   +K++   +G     +++   +   P     F
Sbjct: 227 DTVLYFEGERFNFYRIVKVVKNRFGSSGEVAVFRMLDRGLEEVPEPSAFF 276


>gi|300934649|ref|ZP_07149905.1| DNA repair protein RadA [Corynebacterium resistens DSM 45100]
          Length = 478

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 66/187 (35%), Gaps = 22/187 (11%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            SG   LD  LG GG   G  V + G    GK+TL L   A+  K G T   + AE ++ 
Sbjct: 80  PSGLSELDRVLG-GGIVPGSAVLLAGEPGVGKSTLLLEVAARWAKLGRTVLILTAEESVG 138

Query: 109 SI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
            +   A + G     L ++     E  LE     + +   +++++DS+  +         
Sbjct: 139 QVRHRAERTGALDDRLYLAN----ENDLERALAHIEAIKPELVIVDSLQTM-------QA 187

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
            G                 LT+    S   ++ I  +  +  V         G   ++  
Sbjct: 188 TGVEGVAGGVTQTRSVTSTLTTFAKASGTPVIAIGHVTKEGNV--------AGPRTIEHL 239

Query: 227 SSVRLDI 233
             V L+ 
Sbjct: 240 VDVVLNF 246


>gi|104783713|ref|YP_610211.1| DNA repair protein RadA [Pseudomonas entomophila L48]
 gi|95112700|emb|CAK17428.1| DNA repair protein RadA [Pseudomonas entomophila L48]
          Length = 455

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 56/146 (38%), Gaps = 8/146 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I   ++ S  LD  LG GG   G +V I G    GK+T+ L T+           +V
Sbjct: 67  VEEIPRFTTSSTELDRVLG-GGLVDGSVVLIGGDPGIGKSTILLQTLCNIAVQ-MPALYV 124

Query: 102 DAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +   +   +R+LG+    L +      E  +E      R     ++VIDS+  +  
Sbjct: 125 TGEESQQQVAMRSRRLGLPQDQLKVMT----ETCIETIIATARVEKPRVMVIDSIQTIFT 180

Query: 160 RAEIEGDMGESLPGMQARLMSQALRK 185
                   G +       L+ +  ++
Sbjct: 181 EQLQSAPGGVAQVRESTALLVRYAKQ 206


>gi|238797539|ref|ZP_04641037.1| DNA repair protein radA [Yersinia mollaretii ATCC 43969]
 gi|238718680|gb|EEQ10498.1| DNA repair protein radA [Yersinia mollaretii ATCC 43969]
          Length = 461

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 64/156 (41%), Gaps = 12/156 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       +     S+G L  D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 64  VQKLSDIS--LDEQPRFSTGFLEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 120

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
                   +V  E +L  +  R  +LG+    L +    + EQ   I +         ++
Sbjct: 121 -SENMKTLYVTGEESLQQVAMRAHRLGLPTAGLNMLSETSIEQICLIAE----QEQPRLM 175

Query: 150 VIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
           VIDS+  +   A+I+   G  +     A  +++  +
Sbjct: 176 VIDSIQVMH-MADIQSSPGSVAQVRETAAYLTRFAK 210


>gi|83648603|ref|YP_437038.1| DNA repair protein RadA [Hahella chejuensis KCTC 2396]
 gi|83636646|gb|ABC32613.1| DNA repair protein RadA [Hahella chejuensis KCTC 2396]
          Length = 452

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 85/245 (34%), Gaps = 16/245 (6%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +   S+ S   D  LG GG   G +V I G   +GK+TL L T  +  +      +V  
Sbjct: 68  DLPRTSTLSPEFDRVLG-GGIVPGSVVLIGGHPGAGKSTLLLQTTCRLAER-HKILYVTG 125

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E ++  I  R   + L +  +      +  +E      R    +I+VIDS+  +   AE+
Sbjct: 126 EESIQQIAMRARRLQLNSHGMQVMSETD--VETVLDTAREQQPNILVIDSIQVMHV-AEL 182

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS--PETTTGGN 221
           +   G      +A         LT    +S   L+ +  +     +              
Sbjct: 183 QSAPGSVAQVREAAAA------LTRFAKQSGVALLIVGHVTKDGSLAGPKVLEHMIDASI 236

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE 281
            L+     R    R   IK++     N+  V  +        K      +  EG +  G 
Sbjct: 237 MLEGNEDSRFRTLRA--IKNRFGAV-NELGVFAMMETGLKDVKNPSAIFLNREGHTAAGS 293

Query: 282 LIDLG 286
           ++ + 
Sbjct: 294 VVTVA 298


>gi|58336684|ref|YP_193269.1| DNA repair protein RadA [Lactobacillus acidophilus NCFM]
 gi|227903245|ref|ZP_04021050.1| DNA repair protein RadA [Lactobacillus acidophilus ATCC 4796]
 gi|58254001|gb|AAV42238.1| DNA repair protein [Lactobacillus acidophilus NCFM]
 gi|227869050|gb|EEJ76471.1| DNA repair protein RadA [Lactobacillus acidophilus ATCC 4796]
          Length = 458

 Score = 46.8 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 65/183 (35%), Gaps = 7/183 (3%)

Query: 3   YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
           + KE   V K      A   IQ+  G    ++L       E  E +S+ S  L+  LG G
Sbjct: 33  FEKETEEVQKRSTKATASRLIQKT-GVNEPVKL--DKIKAEKEERISTKSEELNRVLG-G 88

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G   G +V I G    GK+TL L  ++   +      +V  E + + I  R   + +   
Sbjct: 89  GIVPGSLVLIGGDPGIGKSTLMLQIMSDLAEK-HKVLYVSGEESANQIKLRADRLGIGQ- 146

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
             +     E  +      +     D +VIDS+  +   +        S        + + 
Sbjct: 147 -SNMLLYPESDMHDIREQINDVKPDFVVIDSIQTMNEPSLDSMTGSASQVREVTSELMKI 205

Query: 183 LRK 185
            + 
Sbjct: 206 AKM 208


>gi|315425319|dbj|BAJ46986.1| DNA repair protein RadB [Candidatus Caldiarchaeum subterraneum]
          Length = 214

 Score = 46.8 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 75/194 (38%), Gaps = 12/194 (6%)

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL--GVDLKNLLISQPDT 129
           +YG E SGKT L L   A+  + GG   ++D    L     R++     L  L ISQP T
Sbjct: 22  LYGEEKSGKTALLLTAAAKIAEKGGKVVWIDCGARLHPARLRQIFPVERLSQLYISQPRT 81

Query: 130 GEQALE--ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
             +  E  +           +IV D    L  + E+ G     LP  +A  +  AL K  
Sbjct: 82  FREQFETLLNVHDFPPSDASLIVCDDFTYLH-KLELSGKPSTDLPVYRALSLQAALLKNL 140

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV--RLDIRRVGSIKDKDSI 245
           +   +   +LV +        +     +       + ++S V  ++   R  S+  ++  
Sbjct: 141 AIARKISVVLVGLVH-----SIPAIDAQEPVAARIVTYWSDVVAKVQKGRDASVVMQEKP 195

Query: 246 TGNQTRVKVVKNKM 259
              +   K+V+  +
Sbjct: 196 VAQKIYFKIVEKGV 209


>gi|126313965|ref|XP_001373739.1| PREDICTED: similar to Trad [Monodelphis domestica]
          Length = 328

 Score = 46.8 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 68/221 (30%), Gaps = 21/221 (9%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGT 97
             +     ++S+G   LD  L   G   G + EI G  +SGKT + L T A      G  
Sbjct: 73  EELKTSTAILSTGMARLDKLL-DSGLYTGEVTEITGAPASGKTQVCLCTAANVAHSLGQN 131

Query: 98  CAFVDAEHALDSIY-----------ARKLGVDLKNLLISQPDTGEQALEITDM---LVRS 143
             ++D+   L +               +    L+++ + +     Q L++       +  
Sbjct: 132 VLYIDSTGGLTASRLLQLLQAKTEDEEEQARALQSIHVVRVFDIFQMLDMLQDLRGSISQ 191

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
                     +  +   + +   +          LM Q  R+L +        ++  N +
Sbjct: 192 QVTSASGPVKIVVVDSVSAVVSPLLGGQYSEGLALMMQLARELKTLARELGIAVLVTNHV 251

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVR--LDIRRVGSIKDK 242
                           G +  F  S R  L+ R    +   
Sbjct: 252 TR---ERDSGVLKPALGRSWSFVPSTRVLLEAREGSQVPHG 289


>gi|57640983|ref|YP_183461.1| ATPase [Thermococcus kodakarensis KOD1]
 gi|57159307|dbj|BAD85237.1| ATPase, RecA superfamily [Thermococcus kodakarensis KOD1]
          Length = 232

 Score = 46.8 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
            +S+G  GLDI L  GG   GR   + G   +GKTTLA+H        G +  ++  E 
Sbjct: 5   RISTGIPGLDIMLN-GGLIPGRTYLVKGAPGTGKTTLAMHFAMAGISNGESVLYITLEE 62


>gi|113477262|ref|YP_723323.1| circadian clock protein KaiC [Trichodesmium erythraeum IMS101]
 gi|110168310|gb|ABG52850.1| circadian clock protein KaiC [Trichodesmium erythraeum IMS101]
          Length = 519

 Score = 46.8 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 70/219 (31%), Gaps = 33/219 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG   LD   G GGF K  I+   G   +GKT L    I    
Sbjct: 252 MRLTQRSSNV----RVSSGDEILDKMCG-GGFFKDSIILATGATGTGKTLLVSKFIEDGC 306

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
                      E +   ++       +            +L S P++   E  L+I    
Sbjct: 307 MNNEPAMLFAYEESRAQLFRNAFSWGIDFEELEKKGLLRILCSYPESAGLEDHLQIIKSE 366

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 367 IAEFKPSRIAIDSLSALA-------------RGVSNNAFRQFVIGVTGFAKQEEITGFFT 413

Query: 201 N---QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           N   Q      +      T T    +  Y  +R ++ R 
Sbjct: 414 NTTDQFMGSNSITDSHISTITDTILMLQYVEIRGEMSRA 452



 Score = 39.8 bits (91), Expect = 0.68,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 58/169 (34%), Gaps = 12/169 (7%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ----SQKTGGTCA 99
           G+E + +   G D  +  GG P GR   + G   +GKT  A+  +        + G    
Sbjct: 17  GVEKIKTMIEGFDD-ISHGGMPVGRTTLVSGTSGTGKTLFAIQFLYNGITYFDEPGVFVT 75

Query: 100 FVDAEHALDSIYARKLGVDLKNLLIS------QPDTGEQALEITDMLVRSGAVDIIVIDS 153
           F ++   +    A   G +L+ L+              +  +I      S  ++ I    
Sbjct: 76  FEESPQDIIKN-AYSFGWNLQQLVDHGKLFILDASPDPEGQDIVGNFDLSALIERIQYAI 134

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           +     R  I+           A ++ + + +L + + +     +   +
Sbjct: 135 LKYKARRVSIDSVTAVFQQYDAASVVRREIFRLVARLKQVGATTIMTTE 183


>gi|261253393|ref|ZP_05945966.1| RecA/RadA recombinase [Vibrio orientalis CIP 102891]
 gi|260936784|gb|EEX92773.1| RecA/RadA recombinase [Vibrio orientalis CIP 102891]
          Length = 225

 Score = 46.8 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
            L S     E  +   +G   LD  L  GGFPK  ++E+ G  S G+  L L    ++  
Sbjct: 13  WLWSGVQTPEHSDHYPTGYDLLDQKL-EGGFPKHGVIELQGASSIGELRL-LIPHLKNTS 70

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
                 F+     L +      G+D   +L+  P + ++AL   +  +RSGA   +++
Sbjct: 71  QERLSVFIQPPGDLCAEQLCNEGIDNNKVLLVYPRSEKEALWTAEQCLRSGACSNVLL 128


>gi|27377288|ref|NP_768817.1| hypothetical protein blr2177 [Bradyrhizobium japonicum USDA 110]
 gi|27350431|dbj|BAC47442.1| blr2177 [Bradyrhizobium japonicum USDA 110]
          Length = 506

 Score = 46.8 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +  +S+G+ GLD  LG GGF   R+    G   SGKTTLAL  + +  + G    ++  
Sbjct: 12  ELPRISTGNFGLDDILG-GGFDPERMHLFEGQPGSGKTTLALEFLLEGVRVGEPTLYITL 70

Query: 104 EHALDSIY--ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
                 +   A++ G  L  + I +    E  L+ +  L      ++ + ++   +  R 
Sbjct: 71  SETEQELRLVAKRHGWSLNGITIFELIPPETTLDPSQELTVLHPAEMELSETTQMIFDRV 130

Query: 162 E 162
           E
Sbjct: 131 E 131



 Score = 41.0 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 75/224 (33%), Gaps = 21/224 (9%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF--V 101
             +VV SG+  LD  LG GG  +G  V + G    GK++LAL     +            
Sbjct: 253 DSDVVLSGNPELDTLLG-GGLERGTNVLLIGAAGVGKSSLALTYAIAAAARNERSVIFAF 311

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           D      S  A+ LG+ L++         ++ L     +  +        D+V +   RA
Sbjct: 312 DEGRGTVSARAKTLGLPLQD-------GLDKGLIDFQQIDPAEMAPGEFADAVRSSVERA 364

Query: 162 EIEGDMGESL------PGMQARLMSQALRKLTSSISRSKCILVFINQM--RMKIGVMFGS 213
           +    + +SL         +  L+ Q    L+    R    ++ + Q      +      
Sbjct: 365 DARVVIIDSLNGYLNAMPDERFLILQMHELLSYLSHRGALTILVLAQHGLVGPMDTPLDI 424

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257
                G   L+++       R +  +K +    GN         
Sbjct: 425 SYLADGVLMLRYFEFDGSVRRALSVVKKRS---GNHEHTIREFK 465


>gi|146279342|ref|YP_001169500.1| circadian clock protein KaiC [Rhodobacter sphaeroides ATCC 17025]
 gi|145557583|gb|ABP72195.1| circadian clock protein KaiC [Rhodobacter sphaeroides ATCC 17025]
          Length = 570

 Score = 46.8 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E ++SG   LD  L  GGF +G  + + G   SGK++LA H  A +   G    +   E 
Sbjct: 248 ERIASGVPDLDAMLTGGGFFRGSSILVSGVAGSGKSSLAAHFAAAACARGERAMYFSFEE 307

Query: 106 ALDS--IYARKLGVDLKNLLI 124
           A D      R LG+DL     
Sbjct: 308 AADQAVRNMRSLGLDLGRWRE 328



 Score = 37.5 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           +G  G D  L +GG P GR   I G    GKT  A
Sbjct: 11 PTGIQGFDD-LTLGGLPTGRPSLICGSAGCGKTLFA 45


>gi|237715760|ref|ZP_04546241.1| replicative DNA helicase [Bacteroides sp. D1]
 gi|262408768|ref|ZP_06085314.1| replicative DNA helicase [Bacteroides sp. 2_1_22]
 gi|294645528|ref|ZP_06723224.1| replicative DNA helicase [Bacteroides ovatus SD CC 2a]
 gi|294806588|ref|ZP_06765424.1| replicative DNA helicase [Bacteroides xylanisolvens SD CC 1b]
 gi|229444469|gb|EEO50260.1| replicative DNA helicase [Bacteroides sp. D1]
 gi|262353633|gb|EEZ02727.1| replicative DNA helicase [Bacteroides sp. 2_1_22]
 gi|292639102|gb|EFF57424.1| replicative DNA helicase [Bacteroides ovatus SD CC 2a]
 gi|294446203|gb|EFG14834.1| replicative DNA helicase [Bacteroides xylanisolvens SD CC 1b]
          Length = 453

 Score = 46.8 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 34/120 (28%), Gaps = 4/120 (3%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
                G+  + +G   LD     GG     ++ I    S GKT  ALH    +   G   
Sbjct: 171 AKSVNGVTGIPTGLTELDQK--TGGLQDSDLIVIAARPSVGKTAFALHLARSAAMAGNAV 228

Query: 99  AFVDAE--HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
           A    E      +        ++            Q +E         +   I +D   +
Sbjct: 229 AVYSLEMQGERLADRWLAAASNINPYRWRNGIPTLQEMENAHTAASELSGLPIYVDDSTS 288


>gi|47847023|dbj|BAD21220.1| circadian clock protein KaiC [Nostoc cycadae]
          Length = 519

 Score = 46.8 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 71/219 (32%), Gaps = 33/219 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG   LD   G GGF K  I+   G   +GKT L    +    
Sbjct: 251 MRLTQRSSNV----RVSSGVKTLDEMCG-GGFFKDSIILATGATGTGKTLLVSKFLQNGC 305

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
             G        E +   +        +            ++ + P++   E  L+I    
Sbjct: 306 VNGERAILFAYEESRAQLSRNASSWGIDFEELEHQGLLKIICTYPESTGLEDHLQIIKSE 365

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           + +     I IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 366 IANFKPARIAIDSLSALA-------------RGVSNNAFRQFVIGVTGYAKQEEITGFFT 412

Query: 201 N---QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           N   Q      +      T T    +  Y  +R ++ R 
Sbjct: 413 NTTDQFMGSHSITDSHISTITDTILMLQYVEIRGEMSRA 451



 Score = 38.7 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 37 SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
                 G+E + +   G D  +  GG P GR   + G   +GKT  +L  +  
Sbjct: 9  QNQPPIGGVEKIRTMIEGFDD-ISHGGLPVGRTTLVSGTSGTGKTLFSLQFLYN 61


>gi|327292132|ref|XP_003230774.1| PREDICTED: DNA repair protein RAD51 homolog 3-like, partial [Anolis
           carolinensis]
          Length = 186

 Score = 46.8 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 32/108 (29%), Gaps = 17/108 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           + +    LD  LG GG   G+I EI G    GKT L +      Q         G   F+
Sbjct: 51  IVTFCSALDGVLG-GGIQLGKITEICGAPGVGKTQLCMQLTVDIQIPESFGGLAGEAVFI 109

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           D E +            +  +        +    I +          +
Sbjct: 110 DTEGSFM----------VDRVADMAVACVQHCRLIAETHPDEDHPPAL 147


>gi|269215101|ref|ZP_06159039.1| DNA repair protein RadA [Neisseria lactamica ATCC 23970]
 gi|269208321|gb|EEZ74776.1| DNA repair protein RadA [Neisseria lactamica ATCC 23970]
          Length = 464

 Score = 46.8 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 69/202 (34%), Gaps = 11/202 (5%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
               +    +G   LD  LG GG   G ++ + G    GK+TL L TIA+  ++     +
Sbjct: 70  TATEVPRNPTGMGELDRVLG-GGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQS-RKVLY 127

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E +   +  R     L+          E  +E     ++    +++VIDS+  +   
Sbjct: 128 VSGEESAQQVALRAQ--RLELPTDGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQTMYSD 185

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
                    S     A        +LT    +    ++ +  +     +           
Sbjct: 186 QITSAPGSVSQVRECAA-------QLTRMAKQMGTAMILVGHVTKDGAIAGPRVLEHMVD 238

Query: 221 NALKFYSSVRLDIRRVGSIKDK 242
             L F      + R + +IK++
Sbjct: 239 TVLYFEGDQHSNYRMIRAIKNR 260


>gi|121701483|ref|XP_001269006.1| DNA repair protein (Rad57), putative [Aspergillus clavatus NRRL 1]
 gi|119397149|gb|EAW07580.1| DNA repair protein (Rad57), putative [Aspergillus clavatus NRRL 1]
          Length = 886

 Score = 46.8 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 68/185 (36%), Gaps = 26/185 (14%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-----KTGGTCAFV 101
            +S+    LD  L  GG P G + E+ G   SGKT   L  +   Q       G    ++
Sbjct: 442 AISTLDPTLDELLN-GGVPVGYLTEVTGESGSGKTQFLLGLLLAVQLPEPRGLGKGAIYI 500

Query: 102 DAEHALDSIYARKL---GVDLKNLLISQPDTGEQALEI---------------TDMLVRS 143
             E AL +    +L      L  L   +  T E  L I                 + +  
Sbjct: 501 STEAALATSRLSQLLESHPYLSTLPEDRAPTLENILSINAMDLETQDHILNYQLPVAITR 560

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             V ++VIDS+ A   RAE      + L   ++  +++  + L +  +     +V  NQ+
Sbjct: 561 YNVGLVVIDSITA-NYRAEHTSHNVQGL-STRSSELAKLGQLLRNLATAHNIAIVVANQV 618

Query: 204 RMKIG 208
             +  
Sbjct: 619 SDRFD 623


>gi|330971292|gb|EGH71358.1| KaiC [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 455

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC--AFVDAEH 105
           +SSG   LD  LG GG   G    I GP  +GK+ ++L    Q+   G        D E 
Sbjct: 209 LSSGIPELDNLLG-GGIEGGSSTLILGPAGTGKSLISLVFAVQAVARGERVGLFIFDEEM 267

Query: 106 ALDSIYARKLGVDLKNL 122
            L      KLG+DL+ L
Sbjct: 268 GLLFERMLKLGIDLRAL 284


>gi|320163782|gb|EFW40681.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 331

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 64/206 (31%), Gaps = 23/206 (11%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT---LALHT-IAQSQKTGGTCAFVD 102
           ++S+G   LD  L  GG   G I E+ GP SSGKT      LH   A +  T     ++ 
Sbjct: 74  ILSTGCSNLDSLLS-GGIYSGEITELVGPTSSGKTQASSTCLHISTAVACTTDSNVIYIS 132

Query: 103 AEHALDSIYARKLGV-----------------DLKNLLISQPDTGEQALEITDMLVRSGA 145
             +         +                    ++ + +    +    LE     +++  
Sbjct: 133 TNNEFSPTRLAAIHRGFATEGADIRNLTTTLEKIRVVFVHDLHSLLTVLEELLQHLQAQD 192

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
             +I+   +  +   A +   +  +     A L ++  R L          ++  N    
Sbjct: 193 DQVILASKLIVIDSIASVISPVIGTQLRGHA-LTTRLARLLKVIAMDHAMGVLVTNYTVG 251

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRL 231
           +        +    G       S ++
Sbjct: 252 QHDRDADGGKRAALGQTWTHVPSTQI 277


>gi|317123125|ref|YP_004103128.1| DNA repair protein RadA [Thermaerobacter marianensis DSM 12885]
 gi|315593105|gb|ADU52401.1| DNA repair protein RadA [Thermaerobacter marianensis DSM 12885]
          Length = 465

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 51/144 (35%), Gaps = 7/144 (4%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
             + +G   LD  LG G  P G +V + G    GK+TL L         G    +V  E 
Sbjct: 77  PRLETGMAELDRVLGGGFVP-GSVVLVGGDPGVGKSTLLLQVSQNLAARGLPVLYVTGEE 135

Query: 106 ALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           +   +   A +LG  +  L +       QA E     +      + VIDS+  L      
Sbjct: 136 SAAQVRLRAERLGALVPGLAVLPTTDALQAAE----AIGRYQPALAVIDSIQTLAHPDVA 191

Query: 164 EGDMGESLPGMQARLMSQALRKLT 187
                 S     A L+    ++L 
Sbjct: 192 SAPGSVSQVRESAALLLAVAKRLP 215


>gi|310821544|ref|YP_003953902.1| hypothetical protein STAUR_4295 [Stigmatella aurantiaca DW4/3-1]
 gi|309394616|gb|ADO72075.1| uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 355

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 62/182 (34%), Gaps = 9/182 (4%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +  V +G+  LD  LG GGFP   I  + G   SGKT LA   I  + + G        
Sbjct: 18  KLPRVPTGNPQLDAILG-GGFPANSINILMGEPGSGKTILAERLIFANAEVGQRPILYLT 76

Query: 104 EHALD----SIYARKLG-VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
             +        Y ++ G  D + L          A E+ +  + +      + + +  L+
Sbjct: 77  TLSEPLEKVVRYLQQFGFYDEEKLTSGAIVYESIAQELEEQGIAAVVPK--LKEIIKTLS 134

Query: 159 PRAEIEGDMGESL-PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
           P   +                M + L +++  ++  +    F+ +       ++      
Sbjct: 135 PSIIVIDSFKAVHDLSTSVPDMRRMLYEVSGLLTAYETTAFFVGEYSEAQISIYPEFAVA 194

Query: 218 TG 219
            G
Sbjct: 195 DG 196



 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           +G  GLD  L  GG   G    I G   SGKTTLAL  I +  K G   +   +   
Sbjct: 261 TGVKGLDTML-QGGVWAGSSTLIEGRTGSGKTTLALQFILEGLKRGDPASTSTSRRT 316


>gi|117650722|gb|ABK54350.1| KaiC [Leptolyngbya boryana IAM M-101]
          Length = 517

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 62/183 (33%), Gaps = 30/183 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG   LD   G GGF K  I+   G   +GKT L    + ++ 
Sbjct: 252 MRLTQRSSNV----RVSSGVNTLDEMCG-GGFFKDSIILATGATGTGKTLLVSKFLQEAC 306

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
           + G        E +   +        +            ++ + P++   E  L+I    
Sbjct: 307 QRGDRAILFAYEESRAQLSRNAYSWGIDFEELEQQGLLKIICAYPESAGLEDHLQIIKSE 366

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 367 ISEFKPSRIAIDSLSALA-------------RGVSNNAFRQFVIGVTGFAKQEEITGFFT 413

Query: 201 NQM 203
           N  
Sbjct: 414 NTT 416



 Score = 38.7 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 4/91 (4%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT--- 94
             +    +  + +   G D  +  GG P GR   + G   +GKT LA+  +         
Sbjct: 11  NPADLSSVRKIRTLIEGFDD-ISHGGLPVGRTTLVSGTSGTGKTLLAVQFLYNGITQFDE 69

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
            G     +   A     A   G DL+  +  
Sbjct: 70  AGVFVTFEESPADIIKNAYSFGWDLQRFVDE 100


>gi|256397461|ref|YP_003119025.1| DNA repair protein RadA [Catenulispora acidiphila DSM 44928]
 gi|256363687|gb|ACU77184.1| DNA repair protein RadA [Catenulispora acidiphila DSM 44928]
          Length = 468

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 3/139 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
             +    V +G   LD  LG GG   G +V + G    GK+TL L   A    +G T   
Sbjct: 70  AVDDAAAVPTGVGELDRVLG-GGIVPGAVVLLAGEPGIGKSTLLLEAAASYAASGATTLV 128

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           +  E +   +  R   ++  +  +      +  L      + +    ++++DSV  +   
Sbjct: 129 ITGEESAAQVRLRADRINAVHPNLLLAAETD--LGSVLGQIEAVRPRLVIVDSVQTIASA 186

Query: 161 AEIEGDMGESLPGMQARLM 179
           A      G +     A  +
Sbjct: 187 AVDGTPGGVTQVREVAASL 205


>gi|229591047|ref|YP_002873166.1| hypothetical protein PFLU3604 [Pseudomonas fluorescens SBW25]
 gi|229362913|emb|CAY49824.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 204

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 58/158 (36%), Gaps = 7/158 (4%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI-YGPESSGKTTLALHTIAQSQKTGGTCA 99
                 V  +G   LD  L  GG+P+  + EI    +  G+  L L T+A+  K G    
Sbjct: 22  AAPPASVYPTGLAALDAVLPSGGWPEAALSEILMAKDGVGELQLVLPTLARLSKAGERIV 81

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
            V   +       +  GVDL+ L + Q +  +    +   L       ++          
Sbjct: 82  LVAPPYTPYPHAWQNAGVDLRLLSVIQAEERDALWAVEQCLRSGSCGAVLCW------PR 135

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           +A+        +     + ++ A R L+ +I+ S   L
Sbjct: 136 KADDRALRRLQVAAETGQTLAFAWRALSEAINASPAAL 173


>gi|156744068|ref|YP_001434197.1| circadian clock protein KaiC [Roseiflexus castenholzii DSM 13941]
 gi|156235396|gb|ABU60179.1| putative circadian clock protein, KaiC [Roseiflexus castenholzii
           DSM 13941]
          Length = 510

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 13/131 (9%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            V+SG+  LD   G GGF +  I+ + G   +GKT +    +A     G  C     E +
Sbjct: 256 RVTSGNPELDRMCG-GGFFRDSILLVSGATGTGKTLMTTEFMAGGVNRGERCLLFAFEES 314

Query: 107 LDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDMLVRSGAVDIIVIDSV 154
            + ++    G  +            ++   P+T   E  L     L++    + + +DS+
Sbjct: 315 REQLFRNATGWGVDFEQMERDGLLRVVCEYPETAGLEDHLIAMKKLIQEFRPNRVAVDSL 374

Query: 155 AALTPRAEIEG 165
           +AL   + I G
Sbjct: 375 SALERVSTIRG 385



 Score = 45.2 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
           +Q      IE + +G  G D  +  GG P GR   + G   S KT  A   +A+  +  G
Sbjct: 2   TQNPRQPAIEKLPTGISGFD-LIANGGIPAGRTTLVSGTAGSAKTVFAAQFLAEGIRKYG 60

Query: 97  TCAF---VDAEHALDSIYARKLGVDLKNL 122
                   +   +        LG D+   
Sbjct: 61  EPGVFVTFEEPPSDIRRNMESLGWDIPAW 89


>gi|320539937|ref|ZP_08039596.1| putative repair protein [Serratia symbiotica str. Tucson]
 gi|320030123|gb|EFW12143.1| putative repair protein [Serratia symbiotica str. Tucson]
          Length = 461

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 66/156 (42%), Gaps = 12/156 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   ++G L  D  LG GG   G  + I G   +GK+TL L  + + 
Sbjct: 63  VQKLSDIS--LEALPRFTTGFLEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQVLCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +      +V  E +L  +  R  +LG+  + L +    + EQ   + +         ++
Sbjct: 120 SEQ-MKTLYVTGEESLQQVAMRAHRLGLPTRGLNMLSETSIEQICLVAE----QEQPKLM 174

Query: 150 VIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALR 184
           VIDS+  +   A+I+   G  +     A  +++  +
Sbjct: 175 VIDSIQVMH-MADIQSSPGSVAQVRETAAYLTRFAK 209


>gi|222085426|ref|YP_002543956.1| DNA repair protein RadA [Agrobacterium radiobacter K84]
 gi|221722874|gb|ACM26030.1| DNA repair protein RadA [Agrobacterium radiobacter K84]
          Length = 467

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 71/211 (33%), Gaps = 4/211 (1%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG  + L +     E    + +G   LD A G GGF +G  V + G    GK+TL +   
Sbjct: 52  KGRAVTLTALSGEIEEAPRIYTGISELDRATG-GGFVRGSAVLVGGDPGIGKSTLLMQAA 110

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A   + G    +V  E A+  +  R   +   +  +          +I   L      D+
Sbjct: 111 AALARRGHKIVYVSGEEAVAQVRLRAQRLHAADTDVMLAA-ETNVEDILATLAEGKRPDL 169

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM-KI 207
           ++IDS+  L            +      + M +   K T +       +    Q+   ++
Sbjct: 170 VIIDSIQTLWSELAESAPGTVTQVRTGVQAMIRFA-KQTGAAMVLVGHVTKDGQIAGPRV 228

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
                       G+    Y  +R    R G 
Sbjct: 229 VEHMVDAVLYFEGDRGHHYRILRTVKNRFGP 259


>gi|297180415|gb|ADI16631.1| predicted ATP-dependent serine protease [uncultured delta
           proteobacterium HF0010_01J10]
          Length = 468

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 87/230 (37%), Gaps = 16/230 (6%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +L    +  EG   + +G   LD  LG GG   G +V + G    GK+TL L    +  +
Sbjct: 76  RLVDVRADGEGEVRMRTGLAELDTVLG-GGLVAGSLVLVGGDPGVGKSTLLLTAAERLAQ 134

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            G    +V  E ++  ++ R   + L    +      +      +  +RS    ++V+DS
Sbjct: 135 RGAPILYVSGEESVQQVHLRAQRLGLGAPHLHLLSHTD--FGHVESAIRSLKPTVVVLDS 192

Query: 154 VAA--LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           V    L     I G + +        ++          +++S    VF+     K G + 
Sbjct: 193 VQTVYLPQLPNIPGSVTQVREVAHRAML----------LAKSTNTAVFLVGHVTKSGELA 242

Query: 212 GSPETTTGGNALKFYSSV-RLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260
           G        + +  +    R  +R + S+K++    G     ++V + + 
Sbjct: 243 GPKVLEHFVDTVIHFEGDGRTPLRILRSVKNRFGPAGELGVFEMVDSGLQ 292


>gi|66045687|ref|YP_235528.1| KaiC [Pseudomonas syringae pv. syringae B728a]
 gi|63256394|gb|AAY37490.1| KaiC [Pseudomonas syringae pv. syringae B728a]
          Length = 494

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC--AFVDAEH 105
           +SSG   LD  LG GG   G    I GP  +GK+ ++L    Q+   G        D E 
Sbjct: 248 LSSGIPELDNLLG-GGIEGGSSTLILGPAGTGKSLISLVFAVQAVARGERVGLFIFDEEM 306

Query: 106 ALDSIYARKLGVDLKNL 122
            L      KLG+DL+ L
Sbjct: 307 GLLFERMLKLGIDLRAL 323



 Score = 42.1 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 3/102 (2%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G  GLD  L  GG  +  +  + G   +GKTT+AL  +      G    ++        
Sbjct: 8   TGIEGLDDILA-GGLSRSHVFLLEGEPGTGKTTVALQFLQAGAAAGEISLYITLSETESE 66

Query: 110 IYARKL--GVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + +     G +L   +     T  ++L   D          +
Sbjct: 67  LRSGAASHGWELDEHINIFELTPPESLLDADHHQSLLYSSDL 108


>gi|110633339|ref|YP_673547.1| DNA repair protein RadA [Mesorhizobium sp. BNC1]
 gi|110284323|gb|ABG62382.1| DNA replication and repair protein RadA [Chelativorans sp. BNC1]
          Length = 462

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 63/196 (32%), Gaps = 2/196 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E    + +G   LD A G GGF +G  + + G    GK+TL     A     G    +V 
Sbjct: 68  EDAPRIITGIGELDRATG-GGFVRGSALLVGGDPGIGKSTLLTQAAAALASRGHRIVYVS 126

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E A+  I  R   + + N  +           I   +      D++++DS+  L     
Sbjct: 127 GEEAVAQIRLRAQRLGVANTAVELAA-ETNVENILTTIEDGKRPDLVILDSIQTLWTDMV 185

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
                  +     A+ M +  +   ++I     +         ++            G  
Sbjct: 186 ESAPGTVTQVRAAAQAMIRYAKSTGAAIVLVGHVTKEGQIAGPRVVEHMVDGVLYFEGEG 245

Query: 223 LKFYSSVRLDIRRVGS 238
              Y  +R    R G 
Sbjct: 246 GHHYRILRTVKNRFGP 261


>gi|323497927|ref|ZP_08102936.1| DNA repair protein RadA [Vibrio sinaloensis DSM 21326]
 gi|323316972|gb|EGA69974.1| DNA repair protein RadA [Vibrio sinaloensis DSM 21326]
          Length = 459

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 62/170 (36%), Gaps = 16/170 (9%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +   +SG    D  LG GG   G  + I G   +GK+TL L T+           +V
Sbjct: 70  LQEVPRFTSGYKEFDRVLG-GGVVPGAAILIGGNPGAGKSTLLLQTMCYLASQ-MPTLYV 127

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+   NL +      ++  +I +         I+VIDS+  +  
Sbjct: 128 TGEESLQQVAMRASRLGLPKDNLKMLSETNVDRICQIAEK----EQPKIMVIDSIQVMHV 183

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
                     +     A  +++          +   + VFI     K G 
Sbjct: 184 SDVQSSPGSVAQVRESATALTRYA--------KQNNVSVFIVGHVTKDGT 225


>gi|241759837|ref|ZP_04757937.1| DNA repair protein RadA [Neisseria flavescens SK114]
 gi|241319845|gb|EER56241.1| DNA repair protein RadA [Neisseria flavescens SK114]
          Length = 475

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 59/150 (39%), Gaps = 4/150 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
               +    +G   LD  LG GG   G ++ + G    GK+TL L TIA+  ++     +
Sbjct: 82  TATEVPRNPTGMGELDRVLG-GGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQS-RKVLY 139

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E +   +  R     L+          E  +E     ++    +++VIDS+  +   
Sbjct: 140 VSGEESAQQVALRAQ--RLELPTEGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQTMYSD 197

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSI 190
                    S     A  +++  ++++ ++
Sbjct: 198 QITSAPGSVSQVRECAAQLTRMAKQMSIAM 227


>gi|227522450|ref|ZP_03952499.1| DNA repair protein RadA [Lactobacillus hilgardii ATCC 8290]
 gi|227090402|gb|EEI25714.1| DNA repair protein RadA [Lactobacillus hilgardii ATCC 8290]
          Length = 425

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 6/118 (5%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
            F+      +G   L+  LG GG   G ++ I G    GK+TL L    Q  ++G    +
Sbjct: 35  TFQSEPRFKTGMEELNRVLG-GGVVPGSLILIGGDPGIGKSTLMLQVSGQLSRSGKI-LY 92

Query: 101 VDAEHALDSIYARKLGVDLK-NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           V  E +   I  R   +D+    L   P+T    + +    +     D +VIDSV  +
Sbjct: 93  VSGEESASQIKMRADRLDVDSKQLYVFPETD---MNVIKSTISDMKPDAVVIDSVQTM 147


>gi|163760548|ref|ZP_02167629.1| putative dna repair protein [Hoeflea phototrophica DFL-43]
 gi|162282163|gb|EDQ32453.1| putative dna repair protein [Hoeflea phototrophica DFL-43]
          Length = 467

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 74/213 (34%), Gaps = 8/213 (3%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG  + L S     E    + +    LD   G GGF +G  V + G    GK+TL +   
Sbjct: 52  KGRAVALASLSGEIEEAPRIPTRVSELDRVTG-GGFVRGSAVLVGGDPGIGKSTLLMQAA 110

Query: 89  AQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           A   + G    +V  E A+  +   A++LG     +L++     E   +I   L      
Sbjct: 111 AALARQGHRVIYVSGEEAVAQVRLRAQRLGAADSGVLLAAETNVE---DILATLAEGKRP 167

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM- 205
           D ++IDS+  L            +        M +   K T +       +    Q+   
Sbjct: 168 DFVIIDSIQTLWSDLAGSAPGTVTQVRTGVHAMVRYA-KQTGAAMVLVGHVTKDGQIAGP 226

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           ++            G+    Y  +R    R G+
Sbjct: 227 RVVEHMVDAVLYFEGDRGHHYRILRTVKNRFGA 259


>gi|197097912|ref|NP_001125321.1| DNA repair protein RAD51 homolog 4 [Pongo abelii]
 gi|55727684|emb|CAH90594.1| hypothetical protein [Pongo abelii]
          Length = 328

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 72/250 (28%), Gaps = 22/250 (8%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGT 97
             +     ++S+G   LD  L   G   G + EI G   SGKT + L   A         
Sbjct: 73  EELKTSTAILSTGIGSLDKLL-DAGLYTGEVTEIVGGPGSGKTQVCLCVAANVAHGLQQN 131

Query: 98  CAFVDAEHALDSIYARKL--------------GVDLKNLLISQPDTGEQALEITDMLVRS 143
             +VD+   L +    +L                 ++ +           L+     V  
Sbjct: 132 VLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALQRIQVVHAFDIFQMLDVLQELRGTVAQ 191

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
                     V  +     +   +          LM Q  R+L +        +V  N  
Sbjct: 192 QVTGSSGTVRVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLARDLGMAVVVTNHT 251

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
                           G +  F  S R+ +    +I+   +  G +       ++  + F
Sbjct: 252 TRDRDSRRL---KPALGRSWSFVPSTRILL---DTIEGAGASGGRRMACLTKSSRQPTGF 305

Query: 264 KQVEFDIMYG 273
           +++     +G
Sbjct: 306 QEMVDTGTWG 315


>gi|113969389|ref|YP_733182.1| DNA repair protein RadA [Shewanella sp. MR-4]
 gi|114046616|ref|YP_737166.1| DNA repair protein RadA [Shewanella sp. MR-7]
 gi|117919498|ref|YP_868690.1| DNA repair protein RadA [Shewanella sp. ANA-3]
 gi|113884073|gb|ABI38125.1| DNA repair protein RadA [Shewanella sp. MR-4]
 gi|113888058|gb|ABI42109.1| DNA repair protein RadA [Shewanella sp. MR-7]
 gi|117611830|gb|ABK47284.1| DNA repair protein RadA [Shewanella sp. ANA-3]
          Length = 454

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 8/146 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
              +  + S    LD  LG GG   G  + I G   +GK+TL L T+    +      +V
Sbjct: 68  LNALPRIVSHFGELDRVLG-GGIVPGSAILIGGHPGAGKSTLLLQTLCHLAEQ-MPALYV 125

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+    L +    + EQ  E+        +  +IV+DS+  +  
Sbjct: 126 TGEESLQQVAMRAHRLGLPTNKLRMLSETSVEQICEVA----LQESPKVIVVDSIQVMHM 181

Query: 160 RAEIEGDMGESLPGMQARLMSQALRK 185
                     S     A  +++  ++
Sbjct: 182 SDVASSPGSVSQVRESASYLTRFAKQ 207


>gi|318080457|ref|ZP_07987789.1| DNA repair protein RadA [Streptomyces sp. SA3_actF]
          Length = 634

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 5/129 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G +V + G    GK+TL L   A++   G    +V  E +  
Sbjct: 74  STGVPELDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLDVAAKAAGPGHRTLYVTGEESAS 132

Query: 109 SIYARKLGVD-LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
            +  R   +D L + L    +T    L      + +    ++V+DSV  +          
Sbjct: 133 QVRLRADRIDALDDELYLAAETD---LSAVLGHLDAVKPSLLVVDSVQTVASPEIDGAPG 189

Query: 168 GESLPGMQA 176
           G +     A
Sbjct: 190 GMAQVREVA 198


>gi|318062066|ref|ZP_07980787.1| DNA repair protein RadA [Streptomyces sp. SA3_actG]
          Length = 549

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 5/129 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G +V + G    GK+TL L   A++   G    +V  E +  
Sbjct: 74  STGVPELDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLDVAAKAAGPGHRTLYVTGEESAS 132

Query: 109 SIYARKLGVD-LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
            +  R   +D L + L    +T    L      + +    ++V+DSV  +          
Sbjct: 133 QVRLRADRIDALDDELYLAAETD---LSAVLGHLDAVKPSLLVVDSVQTVASPEIDGAPG 189

Query: 168 GESLPGMQA 176
           G +     A
Sbjct: 190 GMAQVREVA 198


>gi|302521042|ref|ZP_07273384.1| DNA repair protein RadA [Streptomyces sp. SPB78]
 gi|302429937|gb|EFL01753.1| DNA repair protein RadA [Streptomyces sp. SPB78]
          Length = 503

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 5/129 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G +V + G    GK+TL L   A++   G    +V  E +  
Sbjct: 28  STGVPELDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLDVAAKAAGPGHRTLYVTGEESAS 86

Query: 109 SIYARKLGVD-LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
            +  R   +D L + L    +T    L      + +    ++V+DSV  +          
Sbjct: 87  QVRLRADRIDALDDELYLAAETD---LSAVLGHLDAVKPSLLVVDSVQTVASPEIDGAPG 143

Query: 168 GESLPGMQA 176
           G +     A
Sbjct: 144 GMAQVREVA 152


>gi|169830396|ref|YP_001716378.1| DNA repair protein RadA [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637240|gb|ACA58746.1| DNA repair protein RadA [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 445

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 54/151 (35%), Gaps = 5/151 (3%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            ++SG   +D  LG G  P G +V + G    GK+TL L    +     G   +V  E +
Sbjct: 58  RITSGIGEMDRVLGGGFVP-GSVVLLGGDPGVGKSTLLLQAAVRVAGIVGRVLYVSGEES 116

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV--AALTPRAEIE 164
              +  R     L+ +        E  +E  +  +      ++++DS+   +L   A + 
Sbjct: 117 APQVRLRA--ERLRAVHSGLYLAPETDIERVEKHISELRPVVVIVDSIQTVSLDGLAAVP 174

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           G +G+                +   +     
Sbjct: 175 GSLGQVRECTVRLTRLAKSTGIPVLLVGHVT 205


>gi|269798081|ref|YP_003311981.1| DNA repair protein RadA [Veillonella parvula DSM 2008]
 gi|269094710|gb|ACZ24701.1| DNA repair protein RadA [Veillonella parvula DSM 2008]
          Length = 457

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 55/144 (38%), Gaps = 7/144 (4%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  VS+    +D  LG GG   G ++ + G    GK+TL L    +   T G   +   
Sbjct: 68  SIARVSTTFGEIDRVLG-GGIVPGALMLLGGDPGIGKSTLLLQVSQKVADTVGAVLYASG 126

Query: 104 EHALDS--IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           E +     + A +L ++ + L +      +  LE  + +  S    ++VIDS+  +    
Sbjct: 127 EESQLQLKLRAERLHINTERLQVIADTDLDHILEQAEAMTPS----LLVIDSIQTMYTGD 182

Query: 162 EIEGDMGESLPGMQARLMSQALRK 185
                   S        + +  ++
Sbjct: 183 IDAAPGSVSQVRECTSRLLRFCKE 206


>gi|322500693|emb|CBZ35770.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 649

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/33 (54%), Positives = 23/33 (69%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           S+G +GLD ALG GGF  G + E+YG   +GKT
Sbjct: 281 STGCMGLDQALGGGGFRSGWVTEVYGEAGAGKT 313


>gi|322488742|emb|CBZ23989.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 649

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/33 (54%), Positives = 23/33 (69%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           S+G +GLD ALG GGF  G + E+YG   +GKT
Sbjct: 281 STGCMGLDQALGGGGFRSGWVTEVYGEAGAGKT 313


>gi|258627879|gb|ACV85561.1| truncated RecA-like protein [Anaplasma phagocytophilum]
 gi|258627891|gb|ACV85568.1| truncated RecA-like protein [Anaplasma phagocytophilum]
 gi|258627894|gb|ACV85570.1| truncated RecA-like protein [Anaplasma phagocytophilum]
 gi|258627897|gb|ACV85572.1| truncated RecA-like protein [Anaplasma phagocytophilum]
 gi|258627900|gb|ACV85574.1| truncated RecA-like protein [Anaplasma phagocytophilum]
 gi|258627916|gb|ACV85585.1| truncated RecA-like protein [Anaplasma phagocytophilum]
 gi|258627928|gb|ACV85594.1| truncated RecA-like protein [Anaplasma phagocytophilum]
 gi|258627931|gb|ACV85596.1| truncated RecA-like protein [Anaplasma phagocytophilum]
 gi|258627940|gb|ACV85601.1| truncated RecA-like protein [Anaplasma phagocytophilum]
 gi|258627943|gb|ACV85603.1| truncated RecA-like protein [Anaplasma phagocytophilum]
 gi|258627948|gb|ACV85606.1| truncated RecA-like protein [Anaplasma phagocytophilum]
 gi|258627951|gb|ACV85608.1| truncated RecA-like protein [Anaplasma phagocytophilum]
 gi|258627954|gb|ACV85610.1| truncated RecA-like protein [Anaplasma phagocytophilum]
 gi|258627957|gb|ACV85612.1| truncated RecA-like protein [Anaplasma phagocytophilum]
          Length = 34

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 23/28 (82%)

Query: 8  NIVDKSKALEAALSQIQRVYGKGAIMQL 35
          +  DK +A++AA+ QI+R +G+G+IM+L
Sbjct: 7  SPSDKQRAVDAAIGQIERAFGRGSIMRL 34


>gi|225351005|ref|ZP_03742028.1| hypothetical protein BIFPSEUDO_02586 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158461|gb|EEG71703.1| hypothetical protein BIFPSEUDO_02586 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 413

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 52/150 (34%), Gaps = 9/150 (6%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT------IAQSQKTGG 96
           E I  +S+G    +  LG GG   G +  I G    GK+TL L T      +  +Q    
Sbjct: 16  ENISRISTGFTEFNRILG-GGIVPGSVTLIAGEPGIGKSTLLLETAGNVARLCAAQPERN 74

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
           T  ++  E +   +  R     +  +  +   +    L     L+      + ++DS   
Sbjct: 75  TVLYISGEESQAQVRMRA--SRIGAVEPNLLLSATTDLSTVLGLIEQSKPALAIVDSAQT 132

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           +  +       G +     A  +    + L
Sbjct: 133 IVSQEVDGISGGSTQVREVASALIDTAKTL 162


>gi|212716574|ref|ZP_03324702.1| hypothetical protein BIFCAT_01502 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660278|gb|EEB20853.1| hypothetical protein BIFCAT_01502 [Bifidobacterium catenulatum DSM
           16992]
          Length = 472

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 52/150 (34%), Gaps = 9/150 (6%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT------IAQSQKTGG 96
           E I  +S+G    +  LG GG   G +  I G    GK+TL L T      +  +Q    
Sbjct: 75  ENISRISTGFTEFNRILG-GGIVPGSVTLIAGEPGIGKSTLLLETAGNVARLCAAQPERN 133

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
           T  ++  E +   +  R     +  +  +   +    L     L+      + ++DS   
Sbjct: 134 TVLYISGEESQAQVRMRA--SRIGAVEPNLLLSATTDLSTVLGLIEQSKPALAIVDSAQT 191

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           +  +       G +     A  +    + L
Sbjct: 192 IVSQEVDGISGGSTQVREVASALIDTAKTL 221


>gi|212223760|ref|YP_002306996.1| ATPase [Thermococcus onnurineus NA1]
 gi|212008717|gb|ACJ16099.1| ATPase [Thermococcus onnurineus NA1]
          Length = 234

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 5/106 (4%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD---- 102
            +S+G  GLD  L  GG   GR   + G   +GKTTLA+H        G    +V     
Sbjct: 5   RISTGIPGLDAMLN-GGLIPGRTYLVKGAPGTGKTTLAMHFAMAGIANGENVLYVTLEEP 63

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A++    +      +      +       +   + D    S A +I
Sbjct: 64  ADNLRADMTKMGFNLRDPRFTLIDATPAAERYVLVDDFFESFAKNI 109


>gi|150865083|ref|XP_001384154.2| hypothetical protein PICST_58642 [Scheffersomyces stipitis CBS
           6054]
 gi|149386339|gb|ABN66125.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 541

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
           I    + +S+G   LD  LG GG P G I EI+G    GK+ +      + Q   G C
Sbjct: 81  IKSPSKFISTGLHTLDSDLG-GGIPTGEITEIFGSSGCGKSHMLAQLAMECQLNEGDC 137


>gi|146092913|ref|XP_001466568.1| hypothetical protein [Leishmania infantum]
 gi|134070931|emb|CAM69607.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 649

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/33 (54%), Positives = 23/33 (69%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           S+G +GLD ALG GGF  G + E+YG   +GKT
Sbjct: 281 STGCMGLDQALGGGGFRSGWVTEVYGEAGAGKT 313


>gi|73536558|ref|XP_847703.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|321438616|emb|CBZ12375.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 650

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/33 (54%), Positives = 23/33 (69%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           S+G +GLD ALG GGF  G + E+YG   +GKT
Sbjct: 282 STGCMGLDQALGGGGFRSGWVTEVYGEAGAGKT 314


>gi|284048254|ref|YP_003398593.1| DNA repair protein RadA [Acidaminococcus fermentans DSM 20731]
 gi|283952475|gb|ADB47278.1| DNA repair protein RadA [Acidaminococcus fermentans DSM 20731]
          Length = 457

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 7/117 (5%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            ++ +++G    D  LG GG   G ++ + G    GK+T+ L    ++   G    +V  
Sbjct: 68  KVQRMTTGIHEFDRVLG-GGIVPGSLILLGGAPGIGKSTITLDVSMKAAARGARVLYVSG 126

Query: 104 EHALDS--IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           E +     + A +LG     L I         L    +  R     ++VIDS+  + 
Sbjct: 127 EESEAQTAMRAERLGQATDALQIMTAT----ELGTILVQARQVKPRLLVIDSIQTMY 179


>gi|238020797|ref|ZP_04601223.1| hypothetical protein GCWU000324_00687 [Kingella oralis ATCC 51147]
 gi|237867777|gb|EEP68783.1| hypothetical protein GCWU000324_00687 [Kingella oralis ATCC 51147]
          Length = 459

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 71/200 (35%), Gaps = 13/200 (6%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +    +G   LD  LG GG   G ++ + G    GK+TL L T+A+  ++         
Sbjct: 68  EVPRQPTGMGELDRVLG-GGLVDGAVILLGGDPGIGKSTLLLQTVAKMAQSRKVLYVSGE 126

Query: 104 EHALD-SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           E A   ++ A++LG+  + + +         LE     ++     ++VIDS+  +     
Sbjct: 127 ESAQQVALRAQRLGLHSEGINLLAEI----RLEAVQAALKQHQPALVVIDSIQTMYSDQI 182

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
                  S     A          T    +    ++F+  +     +             
Sbjct: 183 TSAPGSVSQVRECAAQF-------TRIAKQMGIAMIFVGHVTKDGAIAGPRVLEHMVDTV 235

Query: 223 LKFYSSVRLDIRRVGSIKDK 242
           L F      + R + +IK++
Sbjct: 236 LYFEGDQHSNYRMIRAIKNR 255


>gi|254516851|ref|ZP_05128909.1| DNA repair protein RadA [gamma proteobacterium NOR5-3]
 gi|219674356|gb|EED30724.1| DNA repair protein RadA [gamma proteobacterium NOR5-3]
          Length = 457

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 54/144 (37%), Gaps = 8/144 (5%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            ++ + +G    D  LG GG   G  + + G   +GK+TL L    Q         +V  
Sbjct: 72  EVQRIPTGMAEFDRVLG-GGLVPGSAILLGGNPGAGKSTLLLQACCQLASR-MPALYVTG 129

Query: 104 EHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           E +   I   A++L + L  L +      E  L   D         ++V+DS+  +    
Sbjct: 130 EESPQQIAMRAQRLSLPLDQLKLMAETNVEAILAALDTHQPK----LLVVDSIQVVYSEE 185

Query: 162 EIEGDMGESLPGMQARLMSQALRK 185
                   S     A  +++A ++
Sbjct: 186 LSSAPGSVSQVRDCAATLTRAAKQ 209


>gi|150395953|ref|YP_001326420.1| DNA repair protein RadA [Sinorhizobium medicae WSM419]
 gi|150027468|gb|ABR59585.1| DNA repair protein RadA [Sinorhizobium medicae WSM419]
          Length = 467

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 76/213 (35%), Gaps = 8/213 (3%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG  + L +     E    + +G   LD   G GGF +G  + + G    GK+T+ +   
Sbjct: 52  KGRPVALTTLSGEIEDAPRIQTGISELDRVTG-GGFVRGSALLVGGDPGIGKSTVLMQAA 110

Query: 89  AQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           A   +      +V  E A+  +   A++LG    ++L++     E   +I   L      
Sbjct: 111 AALARRKHRVIYVSGEEAIAQVRLRAQRLGAADSDVLLAAETNVE---DILATLSEDKRP 167

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM- 205
           D+++IDS+  L            +      + M +   K T +       +    Q+   
Sbjct: 168 DLVIIDSIQTLWSDIVDSAPGTVTQVRTGVQAMIRFA-KQTGTAVVLVGHVTKEGQIAGP 226

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           ++            G+    Y  +R    R G 
Sbjct: 227 RVVEHMVDAVLYFEGDRGHHYRILRTVKNRFGP 259


>gi|83594625|ref|YP_428377.1| circadian clock protein KaiC [Rhodospirillum rubrum ATCC 11170]
 gi|83577539|gb|ABC24090.1| circadian clock protein KaiC [Rhodospirillum rubrum ATCC 11170]
          Length = 504

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 30/92 (32%), Gaps = 2/92 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQKTGGTCA 99
           +   +E + +G  G D  +  GG P GR   I G   S KT  +   +A   Q       
Sbjct: 5   LLTEVEKLPTGIPGFD-LIAHGGLPAGRTTLIVGTAGSAKTIFSAQFLAAGIQSFDQGAV 63

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           FV  E ++  I     G               
Sbjct: 64  FVTFEESVADIRRNLAGFGWDIPAWEAAGKWS 95



 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 61/177 (34%), Gaps = 10/177 (5%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           + M+L    S       + SGS+ LD   G GGF +  +V + G   +GKT ++ H +  
Sbjct: 243 SAMELRQGSSDL----RIPSGSVDLDGMCG-GGFFRDSVVLVSGATGTGKTLMSTHFLNG 297

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII- 149
             + G  C     E +   ++    G  +        +   Q   + D    +   D + 
Sbjct: 298 GLQAGERCLLFAFEESRPQLFRNASGWGID---FQAAEDSGQLRVVCDYPEVASIEDHLI 354

Query: 150 -VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
            + + +    P       +         R   + +  LTS I   +   +F +    
Sbjct: 355 KIKEEIDTFHPHRVAVDSLSAIARICSERGFREFVIGLTSFIKHQEVAALFTSNTPT 411


>gi|297172761|gb|ADI23727.1| predicted ATP-dependent serine protease [uncultured
           Oceanospirillales bacterium HF4000_21D01]
          Length = 181

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 6/116 (5%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 63  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119

Query: 92  QKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
            +      +V  E +L  +  R  +LG+   NL +    + EQ   I +       
Sbjct: 120 AQQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLM 174


>gi|145344501|ref|XP_001416770.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576996|gb|ABO95063.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 307

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 1/83 (1%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M++ +  +       VS+    +D AL  GG     + EI G  +S KTTL      ++ 
Sbjct: 1   MRVAAAAAADARAACVSTMCPRIDDAL-RGGVRARHVTEIAGESASAKTTLCAQLAVRAT 59

Query: 93  KTGGTCAFVDAEHALDSIYARKL 115
             GG   +V  +    +   R++
Sbjct: 60  ARGGAAVYVHTDGPAPTALMRRI 82


>gi|116073626|ref|ZP_01470888.1| circadian clock protein KaiC [Synechococcus sp. RS9916]
 gi|116068931|gb|EAU74683.1| circadian clock protein KaiC [Synechococcus sp. RS9916]
          Length = 512

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 33 MQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
          M++ GS GS    ++ + +G  G D     GG P GR   I G   +GKT  +LH +  
Sbjct: 1  MKISGSTGSPQMQVQKLPTGIEGFDDVC-HGGLPIGRSTLISGTSGTGKTVFSLHFLHN 58



 Score = 42.9 bits (99), Expect = 0.071,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 60/181 (33%), Gaps = 30/181 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG   LD   G GGF K  I+   G   +GKT L    I  + 
Sbjct: 248 MRLTQRSSNV----RVSSGVQRLDDMCG-GGFFKDSIILATGATGTGKTLLVSKFIEDAC 302

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
           +          E +   +        +            ++ + P++   E  L+I    
Sbjct: 303 RNKERAILFAYEESRAQLLRNATSWGIDFEQMEQDGLLKIICAYPESTGLEDHLQIIKTE 362

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       + IDS++AL          G S          Q +  +T    + +    F 
Sbjct: 363 INQFKPSRMAIDSLSALA--------RGVSH-----NAFRQFVIGVTGYAKQEEIAGFFT 409

Query: 201 N 201
           N
Sbjct: 410 N 410


>gi|119719438|ref|YP_919933.1| putative circadian clock protein, KaiC [Thermofilum pendens Hrk 5]
 gi|119524558|gb|ABL77930.1| putative circadian clock protein, KaiC [Thermofilum pendens Hrk 5]
          Length = 364

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 86/239 (35%), Gaps = 21/239 (8%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +G  GLD  L  GGF +G+   + G    GKT  ++  +      G    ++  +   +
Sbjct: 119 PTGIPGLDEILA-GGFLRGKTYLVAGEAGCGKTIFSIQFLINGALNGEPGLYIAIDEPTN 177

Query: 109 SIYA--RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
            +    +  G DL +L+ ++        ++  + +R+    I + D    + PR  IE  
Sbjct: 178 QLLRGLKLFGWDLGDLISAR--------KLMFLDMRTHFSKIYMRDERKHIEPRYIIEQI 229

Query: 167 MG-------ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
           +        + L       +    ++     +R     +     +        + E  TG
Sbjct: 230 LNAAKKINAKRLVIDPIAPLVYGGKEEDVLYAREFLREMVFAIEKTGELTTIMTSEIPTG 289

Query: 220 GNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ--VEFDIMYGEGI 276
              L     V   +     +   + I GN  RV  ++    +P K     FDI+ G+GI
Sbjct: 290 STKLSR-FGVEEFLASGIIVLGIEEIYGNVERVMYIRKARWAPVKPSKYIFDIVSGKGI 347


>gi|22298026|ref|NP_681273.1| circadian clock protein KaiC [Thermosynechococcus elongatus BP-1]
 gi|54036111|sp|Q6L8J9|KAIC_THEVL RecName: Full=Circadian clock protein kinase kaiC
 gi|54036125|sp|Q79V60|KAIC_THEEB RecName: Full=Circadian clock protein kinase kaiC
 gi|19352187|dbj|BAB85985.1| circadian clock protein KaiC [Synechococcus elongatus]
 gi|22294204|dbj|BAC08035.1| kaiC [Thermosynechococcus elongatus BP-1]
 gi|47847027|dbj|BAD21223.1| circadian clock protein KaiC [Thermosynechococcus vulcanus]
          Length = 518

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 71/219 (32%), Gaps = 33/219 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG   LD   G GGF K  I+   G   +GKT L    +    
Sbjct: 252 MRLTQRSSNV----RVSSGVKTLDEMCG-GGFFKDSIILATGATGTGKTLLVSKFLETGC 306

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
           + G        E +   +        +            ++ + P++   E  L+I    
Sbjct: 307 QQGERALLFAYEESRAQLSRNASSWGIDFEELERRGLLRIICAYPESAGLEDHLQIIKSE 366

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       + IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 367 IADFKPSRVAIDSLSALA-------------RGVSNNAFRQFVIGVTGFAKQEEITGFFT 413

Query: 201 N---QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           N   Q      +      T T    L  Y  +R ++ R 
Sbjct: 414 NTTDQFMGSNSITESHISTITDTILLLQYVEIRGEMSRA 452



 Score = 38.7 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++ + +   G D  +  GG P+GR   + G   +GKT  A+  +  
Sbjct: 18 EVKKIPTMIEGFDD-ISHGGLPQGRTTLVSGTSGTGKTLFAVQFLYN 63


>gi|85717410|ref|ZP_01048360.1| hypothetical protein NB311A_09916 [Nitrobacter sp. Nb-311A]
 gi|85695765|gb|EAQ33673.1| hypothetical protein NB311A_09916 [Nitrobacter sp. Nb-311A]
          Length = 504

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+   +G  GLD  LG GG   G +  + G   +GKTT+AL  + +    G  C ++   
Sbjct: 9   IDRARTGVPGLDDVLG-GGLTTGHVFLLEGNPGTGKTTIALRFLLEGAAAGERCLYITLS 67

Query: 105 HALDSIY 111
                + 
Sbjct: 68  ETEHELR 74


>gi|195110743|ref|XP_001999939.1| GI22807 [Drosophila mojavensis]
 gi|193916533|gb|EDW15400.1| GI22807 [Drosophila mojavensis]
          Length = 345

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 67/217 (30%), Gaps = 19/217 (8%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS------QKTGGTCA 99
             V+ G   LD   G GG     I EI G    GK+ + L               G   A
Sbjct: 86  SRVTFGCAALDQCTG-GGVSIRGITEICGNSGVGKSQVLLQLSLSVQLPATLGGLGKGVA 144

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F+  E A  S    ++    +    ++       + I         +D  + + +  L  
Sbjct: 145 FICTEDAFPSRRLLQISKAFEARYPAEKLNFLGNIFIEHQYESEPLLD-CISNRLPQLLQ 203

Query: 160 RAEIEGDMGESLP---------GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
              I   + +S+            +AR M + +  L S   +  C +V  NQM       
Sbjct: 204 EHSIGLIVIDSVAAIFRLYTDFDKRARDMRRMVHALLSYADKYDCAVVCSNQMTATEETG 263

Query: 211 FGSPETTTGGNA-LKFYSSVRLDIRRV-GSIKDKDSI 245
               E            S  R+ I +V    K  D +
Sbjct: 264 ETRMEDVPCLGLQWANLSRTRMRISKVPKQYKQGDQL 300


>gi|47847014|dbj|BAD21213.1| circadian clock protein KaiC [Synechococcus sp. PCC 7002]
          Length = 516

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 6/93 (6%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL----HTIAQSQ 92
           S     +G++ + +   GLD  +  GG P GR   + G   +GKT LA+    H I    
Sbjct: 7   SNNGAIKGVQKIRTLIEGLDE-ISHGGLPSGRTTLVSGTSGTGKTLLAIQFLYHGIKHFD 65

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
             G    F ++   +    A   G DL++L+  
Sbjct: 66  YPGLFVTFEESPRDIIQN-AHSFGWDLQSLVDE 97



 Score = 46.4 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 73/219 (33%), Gaps = 33/219 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       +SSG   LD   G GGF K  I+   G   +GKT L    + +S 
Sbjct: 249 MRLTQRSSNA----RISSGVETLDKMCG-GGFFKDSIILATGATGTGKTLLVSKFLEESC 303

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
           + G        E +   +        +            LL S P++   E  L++    
Sbjct: 304 RRGERAILFAYEESRAQLSRNASSWGIDFEEMERKGLLKLLCSYPESAGLEDHLQMIKSE 363

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 364 ISEFKPSRIAIDSLSALA-------------RGVTNNAFRQFVIGVTGYAKQEEITGFFT 410

Query: 201 N---QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           N   Q      +      T T    +  Y  +R ++ R 
Sbjct: 411 NTTDQFMGAHSITESHISTITDTILMLQYVEIRGEMSRA 449


>gi|291520387|emb|CBK75608.1| Predicted ATP-dependent serine protease [Butyrivibrio fibrisolvens
           16/4]
          Length = 166

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+     D  LG GG   G +V + G    GK+TL L T      +G +  +V  E +
Sbjct: 68  RISTNIKEFDRVLG-GGIVPGSMVLVGGDPGIGKSTLLLQTCRLLCDSGVSVMYVSGEES 126

Query: 107 LDSIYARK 114
           L  I  R 
Sbjct: 127 LQQIKIRA 134


>gi|315187463|gb|EFU21219.1| DNA repair protein RadA [Spirochaeta thermophila DSM 6578]
          Length = 447

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 4/119 (3%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + +G E + +G    D  LG GG  +G +V + G    GK+TL L   A+    G    +
Sbjct: 61  VAQGEERIVTGVGEFDRVLG-GGLVRGSVVLVGGEPGIGKSTLVLQVAARLAG-GVKVVY 118

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
              E ++  + AR   +      +      E  +E  + L+R    D++V+DS+  L  
Sbjct: 119 AAGEESVGQVAARAARLGCGKAEVELAA--ETQVESLEALLRQRRADVVVVDSLQMLYS 175


>gi|262196306|ref|YP_003267515.1| circadian clock protein, KaiC [Haliangium ochraceum DSM 14365]
 gi|262079653|gb|ACY15622.1| putative circadian clock protein, KaiC [Haliangium ochraceum DSM
           14365]
          Length = 575

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 12/124 (9%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E V SG   LD  LG  G+ +G  V + G   +GK++LA +        G    +   E 
Sbjct: 257 ERVPSGVARLDAMLGGAGYYRGSTVLLSGTAGAGKSSLAAYFANAVCGHGERALYFSFEE 316

Query: 106 ALDSIYA--RKLGVDLKNLLI----------SQPDTGEQALEITDMLVRSGAVDIIVIDS 153
           +   I    + +G+DL+  +                 E  L +    +R      ++ID 
Sbjct: 317 SPTQILRNTKTIGLDLQRWIDGDLLRFVAARPTAHGIETHLALLHRHIRRFEPAAVIIDP 376

Query: 154 VAAL 157
           V+ L
Sbjct: 377 VSNL 380



 Score = 41.4 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 80/215 (37%), Gaps = 15/215 (6%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-GGTCAFVDAEHAL 107
           SSG+ GLD  L  GG P+GR   + G    GKT + +  + +     G   AF+  E  +
Sbjct: 20  SSGTDGLDEILS-GGLPRGRPTLVCGAAGCGKTLMGMQFLVRGALEYGEPGAFIAFEERV 78

Query: 108 DSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI--------IVIDSVAAL 157
           + ++A    LG +L  L      + +        ++ SG  D+        + IDSV A 
Sbjct: 79  EDLHANVASLGFNLAELESRGLLSIDHIQVDPSTIIESGDYDLSGLFIRLGLAIDSVGA- 137

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
             R  I+             ++   LR+L   +       +   +        +G  E  
Sbjct: 138 -KRVVIDTLETLFGGLSNYAIVRAELRRLFDWLKERGVTAIITAERGDNALTRYGLEEYV 196

Query: 218 T-GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251
           +     L      ++  RR+  +K + S+ G    
Sbjct: 197 SDCVIILDHRVVDQVSTRRLRVVKYRGSVHGTNEY 231


>gi|302130182|ref|ZP_07256172.1| hypothetical protein PsyrptN_02240 [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 439

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC--AFVDAEH 105
           +SSG   LD  LG GG   G    I GP  +GK+ ++L    Q+   G        D E 
Sbjct: 193 LSSGIRELDNLLG-GGIESGSSTLILGPAGTGKSLISLVFAVQAVARGERVGLFIFDEEM 251

Query: 106 ALDSIYARKLGVDLKNL 122
            L      KLG+DL+ L
Sbjct: 252 GLLFERMLKLGIDLRAL 268


>gi|301385241|ref|ZP_07233659.1| hypothetical protein PsyrptM_21502 [Pseudomonas syringae pv. tomato
           Max13]
 gi|302063296|ref|ZP_07254837.1| hypothetical protein PsyrptK_25219 [Pseudomonas syringae pv. tomato
           K40]
 gi|331014365|gb|EGH94421.1| hypothetical protein PLA106_00650 [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 453

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC--AFVDAEH 105
           +SSG   LD  LG GG   G    I GP  +GK+ ++L    Q+   G        D E 
Sbjct: 207 LSSGIRELDNLLG-GGIESGSSTLILGPAGTGKSLISLVFAVQAVARGERVGLFIFDEEM 265

Query: 106 ALDSIYARKLGVDLKNL 122
            L      KLG+DL+ L
Sbjct: 266 GLLFERMLKLGIDLRAL 282


>gi|301112304|ref|XP_002905231.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262095561|gb|EEY53613.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 425

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 64/212 (30%), Gaps = 32/212 (15%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA--LHTIAQSQKTGGTCAFVDAEH 105
           + +G   +D AL  GG     + E  G    GK+ +A  L  +           F D EH
Sbjct: 81  LRTGLPSIDQALN-GGLHCRALSEFVGTAGIGKSQVAMTLAVVCAMDYPNNGVVFFDVEH 139

Query: 106 ALDSIYARKLG----------------------VDLKNLLISQPDTGEQALEITDMLVRS 143
              +    ++                         ++ + ++         +  +  + S
Sbjct: 140 NFSAKRLLQITIARIKVTQAGQEDINELAAAVIKRIRVVKVNSIAAFLSKFKEMEDAMHS 199

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
               +++ID V  L  +A+      +     +   M +  R L       +  +V  N+ 
Sbjct: 200 LKAKLLIIDCVTTLFLKAD------DLTHSQRQHEMLRMARDLKLFADTYQAFVVVTNRA 253

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235
               G      +   G N      + R  + R
Sbjct: 254 TTVDGEDGLYTKPQLGDN-WAHCVTTRFIMER 284


>gi|302678715|ref|XP_003029040.1| hypothetical protein SCHCODRAFT_112192 [Schizophyllum commune H4-8]
 gi|300102729|gb|EFI94137.1| hypothetical protein SCHCODRAFT_112192 [Schizophyllum commune H4-8]
          Length = 246

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 1/81 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           ++    LD  L  GG   GR+ E+ GP    K  LAL   A   +TG     VD ++ ++
Sbjct: 100 TTSCKELDHLL-DGGLRPGRVYELSGPPGVPKDALALKIAASYARTGEGTLLVDCQNVIN 158

Query: 109 SIYARKLGVDLKNLLISQPDT 129
           + +   L  D + L+ +    
Sbjct: 159 TDFLEDLEGDEQELISTTAVH 179


>gi|170076915|ref|YP_001733553.1| circadian clock protein KaiC [Synechococcus sp. PCC 7002]
 gi|190358895|sp|Q6L8L5|KAIC_SYNP2 RecName: Full=Circadian clock protein kinase kaiC
 gi|169884584|gb|ACA98297.1| circadian clock protein KaiC [Synechococcus sp. PCC 7002]
          Length = 516

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 6/93 (6%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL----HTIAQSQ 92
           S     +G++ + +   GLD  +  GG P GR   + G   +GKT LA+    H I    
Sbjct: 7   SNNGAIKGVQKIRTLIEGLDE-ISHGGLPSGRTTLVSGTSGTGKTLLAIQFLYHGIKHFD 65

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
             G    F ++   +    A   G DL++L+  
Sbjct: 66  YPGLFVTFEESPRDIIQN-AHSFGWDLQSLVDE 97



 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 72/219 (32%), Gaps = 33/219 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       +SSG   LD   G GGF K  I+   G   +GKT L    + +  
Sbjct: 249 MRLTQRSSNA----RISSGVETLDKMCG-GGFFKDSIILATGATGTGKTLLVSKFLEEGC 303

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
           + G        E +   +        +            LL S P++   E  L++    
Sbjct: 304 RRGERAILFAYEESRAQLSRNASSWGIDFEEMERKGLLKLLCSYPESAGLEDHLQMIKSE 363

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 364 ISEFKPSRIAIDSLSALA-------------RGVTNNAFRQFVIGVTGYAKQEEITGFFT 410

Query: 201 N---QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           N   Q      +      T T    +  Y  +R ++ R 
Sbjct: 411 NTTDQFMGAHSITESHISTITDTILMLQYVEIRGEMSRA 449


>gi|307191609|gb|EFN75106.1| DNA-repair protein XRCC3 [Harpegnathos saltator]
          Length = 244

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 67/212 (31%), Gaps = 27/212 (12%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGGT---CAFV 101
           +++G   LD  L   G     I + YG   +GKT LAL      Q     GG      ++
Sbjct: 11  LTTGCSKLDTILKD-GISCRGITQFYGAAGTGKTQLALQLCLTVQLPTTAGGLQAGAIYI 69

Query: 102 DAEHALDSIYARKL----------GVDLKNLLISQPDTGEQ---ALEITDMLVRSGAVDI 148
             E    S   ++L           V+   + +    T ++    L      + +     
Sbjct: 70  CTEALFPSKRLQQLIENSEIAKIHSVNGDVIFVDHASTMDELEYCLHHKVPALMNAHKIG 129

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           ++I    A   R E      +     + + + +  R+L          ++ INQ+   I 
Sbjct: 130 LLIIDSIAAPYRVE------DWEDPSRGKSLRKIGRQLHELCKNGDLCVICINQVSAIID 183

Query: 209 VMFGSPETTTG-GNALKFYSSVRLDIRRVGSI 239
               S       G       +  +   R  S+
Sbjct: 184 NNIISDNEQPALGLTWSSMITSSIHFYRKASV 215


>gi|303310028|ref|XP_003065027.1| hypothetical protein CPC735_021810 [Coccidioides posadasii C735
           delta SOWgp]
 gi|240104686|gb|EER22882.1| hypothetical protein CPC735_021810 [Coccidioides posadasii C735
           delta SOWgp]
 gi|320033267|gb|EFW15216.1| conserved hypothetical protein [Coccidioides posadasii str.
           Silveira]
          Length = 343

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 77/240 (32%), Gaps = 67/240 (27%)

Query: 47  VVSSGSLGLDIALGI----------------------------GGFPKGRIVEIYGPESS 78
            VS+G   LD+AL +                            GG  +G + EI GP +S
Sbjct: 40  SVSTGLQRLDVALALPTEPQPSPLGLGLSQRCLYDSAGGDGPAGGVQRGEVTEIVGPRAS 99

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL-------------------GVDL 119
           GKT LA+   A+  ++  +  +VD    +       L                      L
Sbjct: 100 GKTVLAMSLAAEVLRSHRSVVWVDTAGPMCLSRLESLLHGKENVTEDGPSQATGRKSHLL 159

Query: 120 KNLLISQPDTGEQALEITDML---VRSGAVDIIVIDSVAALT-----PR----------A 161
           + LL   P +    + +              +IVIDS++ L      PR          +
Sbjct: 160 QRLLHFHPLSLAHLVALVSHPPRGFPPENTGLIVIDSISCLFAAEFRPRLPKRLRETKLS 219

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM--RMKIGVMFGSPETTTG 219
             E    +    +   L+   +  L     R  C +V IN+M  R K        E  +G
Sbjct: 220 RTEQAKLDKESRLYFNLIGSLVSDLRRLAVRFNCAVVVINEMASRFKPSTRPMLHEVISG 279


>gi|157109848|ref|XP_001650848.1| spindle-b recombination protein spn-b [Aedes aegypti]
 gi|108878885|gb|EAT43110.1| spindle-b recombination protein spn-b [Aedes aegypti]
          Length = 266

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 60/204 (29%), Gaps = 16/204 (7%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH---TIAQSQKTGGTCAFVDAE 104
           +  G   LD   G GG     IVEI G   SGKT + LH         +T     ++  E
Sbjct: 30  IKLGVDALDQLTG-GGISSRGIVEIAGDPGSGKTQMCLHLALACQMQCETRKGVVYISTE 88

Query: 105 HALDSIYARK----------LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           H   S    +          +  D      +            +  V      ++  + +
Sbjct: 89  HPFPSKRLVQMEQVMKRNLRITEDSMKFTDNIFVEHLNTAVALEECVNQRLPILLENNPI 148

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           + L   +       E     +A    + +  L S   +    ++  NQ+R  +       
Sbjct: 149 SLLIIDSITAAYTEEQNFVDRAHSFRRVVNALHSLQDKFDFGVLCTNQVRSVVDSSTLDD 208

Query: 215 E--TTTGGNALKFYSSVRLDIRRV 236
           E      G A       R  + R 
Sbjct: 209 ERIVPAMGLAWGSLVHTRFQLSRT 232


>gi|330432822|gb|AEC17881.1| DNA repair protein RadA [Gallibacterium anatis UMN179]
          Length = 456

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 57/146 (39%), Gaps = 8/146 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
              +   SSG   LD  LG GG   G  + I G   +GK+TL L  +    ++     +V
Sbjct: 67  LSELPRFSSGFNELDRVLG-GGIVPGSAILIGGHPGAGKSTLLLQVMCGLAQS-MPTLYV 124

Query: 102 DAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +   A++L + + NL +    + EQ      +        I+VIDS+  +  
Sbjct: 125 TGEESLQQVAMRAKRLNLPMDNLQMLSETSVEQ----ICVTADQLKPKIMVIDSIQVMHL 180

Query: 160 RAEIEGDMGESLPGMQARLMSQALRK 185
                     S     A  +++  + 
Sbjct: 181 ADIQSSPGSVSQVRECASYLTRYAKM 206


>gi|296202005|ref|XP_002748405.1| PREDICTED: DNA repair protein RAD51 homolog 4-like [Callithrix
           jacchus]
          Length = 431

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 61/208 (29%), Gaps = 19/208 (9%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGT 97
             +     ++S+G   LD  L   G   G + EI G   SGKT + L   A         
Sbjct: 73  EELKTSTAILSTGIGSLDKLL-DAGLYTGEVTEIVGGPGSGKTQVCLCVAANVAHGLQQN 131

Query: 98  CAFVDAEHALDSIY-----------ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
             +VD+   L +               +    L+ + +       Q L++   L  +   
Sbjct: 132 VLYVDSSGGLTASRLLQLLQAKTQDEEEQAEALQRIQVVYAFDIFQMLDVLQELRGTVVQ 191

Query: 147 DIIVIDSVA---ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
            +           +     +   +          LM Q  R+L +        +V  N +
Sbjct: 192 QVTGSSGTMKVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLARDLGMAVVVTNHI 251

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRL 231
                           G++  F  S R+
Sbjct: 252 TRDRDSGRL---KPALGHSWSFVPSTRI 276


>gi|148657465|ref|YP_001277670.1| circadian clock protein KaiC [Roseiflexus sp. RS-1]
 gi|148569575|gb|ABQ91720.1| circadian clock protein KaiC [Roseiflexus sp. RS-1]
          Length = 510

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 13/131 (9%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            V+SG+  LD   G GGF +  I+ + G   +GKT +    +A   + G  C     E +
Sbjct: 256 RVTSGNPELDRMCG-GGFFRDSILLVSGATGTGKTLMTTEFMAGGVRRGERCLLFAFEES 314

Query: 107 LDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDMLVRSGAVDIIVIDSV 154
            + ++    G  +            ++   P+T   E  L     L++    + + +DS+
Sbjct: 315 REQLFRNATGWGIDFEQMERDGLLRVVCEYPETAGLEDHLIAMKKLIQEFRPNRVAVDSL 374

Query: 155 AALTPRAEIEG 165
           +AL   + I G
Sbjct: 375 SALERVSTIRG 385



 Score = 43.7 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 4/83 (4%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG---GTCA 99
             IE + +G  G D  +  GG P GR   + G   S KT  A   +A+  +     G   
Sbjct: 8   PAIEKLPTGISGFD-LIANGGIPAGRTTLVSGTAGSAKTVFAAQFLAEGIRKYGEHGVFV 66

Query: 100 FVDAEHALDSIYARKLGVDLKNL 122
             +   +        LG D+   
Sbjct: 67  TFEEPPSDIRRNMESLGWDIATW 89


>gi|116626592|ref|YP_828748.1| putative circadian clock protein, KaiC [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229754|gb|ABJ88463.1| putative circadian clock protein, KaiC [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 505

 Score = 46.4 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 14/132 (10%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           Q + F   E +S G + LD  LG GG  +G    + GP  +GK+T+ L   A + + G  
Sbjct: 245 QQTRFPAQEAIS-GIVELDALLG-GGLTQGTSTLLMGPAGAGKSTIGLRYAAAAAERGEY 302

Query: 98  CAFVDAEHALDS--IYARKLGVDLKNLLIS----------QPDTGEQALEITDMLVRSGA 145
             +V  +  L +    +  LG+DL+ LL +             +    +      V    
Sbjct: 303 AYYVTFDEGLTTLLERSSGLGIDLQPLLDNGRLHLEVVDPSELSPGHFIHRVRAEVEKND 362

Query: 146 VDIIVIDSVAAL 157
              +VIDS+  L
Sbjct: 363 ARTVVIDSLNGL 374



 Score = 41.0 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 3/117 (2%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S G  GLD  L  GG P   +  I G   +GKTTL +  +    + G    ++    + 
Sbjct: 13  ISIGVSGLDAVLS-GGLPPSHLYLIDGDPGTGKTTLGIQFLLAGVQQGEPVLYITLSESE 71

Query: 108 DSIYARKLG--VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
             +         +L  + I +    E++L+  +        ++ +  ++  +  R E
Sbjct: 72  RELRQVARSHAWNLDGVNIFELLPMEESLKAEEQYTVLYPGEVELSATIKGILTRVE 128


>gi|218437599|ref|YP_002375928.1| circadian clock protein KaiC [Cyanothece sp. PCC 7424]
 gi|218170327|gb|ACK69060.1| putative circadian clock protein, KaiC [Cyanothece sp. PCC 7424]
          Length = 520

 Score = 46.4 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 72/219 (32%), Gaps = 33/219 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       +SSG   LD   G GGF K  I+   G   +GKT L    + +  
Sbjct: 253 MRLTQRSSNV----RISSGVKTLDEMCG-GGFFKDSIILATGATGTGKTLLVSKFLEEGC 307

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
           + G        E +   +        +            LL S P++   E  L+I    
Sbjct: 308 RRGERAILFAYEESRAQLSRNASSWGIDFEEMERKGLLKLLCSYPESAGLEDHLQIIKSE 367

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 368 IALFKPSRIAIDSLSALA-------------RGVTNNAFRQFVIGVTGYAKQEEITGFFT 414

Query: 201 N---QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           N   Q      +      T T    +  Y  +R ++ R 
Sbjct: 415 NTTDQFMGAHSITESHISTITDTILMLQYVEIRGEMSRA 453


>gi|77404647|ref|YP_345221.1| circadian clock protein KaiC [Rhodobacter sphaeroides 2.4.1]
 gi|77390297|gb|ABA81480.1| circadian clock protein KaiC [Rhodobacter sphaeroides 2.4.1]
          Length = 570

 Score = 46.4 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 76/236 (32%), Gaps = 23/236 (9%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E ++SG   LD  +  GGF +G  + + G   +GK++LA H  A +   G    +   E 
Sbjct: 248 ERIASGVPDLDAMMAGGGFFRGSSILVSGVAGAGKSSLAAHFAAAACARGERAMYFSFEE 307

Query: 106 ALDS--IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           A D      R LG+DL     +      + +              +++  V    P   +
Sbjct: 308 AADQAVRNMRSLGLDLGRWRDA---GLLRFMATRPTFYSLEMHLAVILREVMRFEPSVVV 364

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
              +           +   L ++   +       +F         +     E TT     
Sbjct: 365 LDPISAFTESGDRLEVQSMLLRIVDFLKNRGITGIFT-------HLAHSQNEATTDAGLS 417

Query: 224 KFYSSVRLDIRRVGSIKDKDSITG--NQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277
                  L + R         + G  N+    +    MA   +  EF +M   GIS
Sbjct: 418 SLMDGWVLMLNR--------EVNGEFNRELYLLKARGMAHSNQVREF-LMSDRGIS 464


>gi|311693378|gb|ADP96251.1| DNA repair protein RadA [marine bacterium HP15]
          Length = 458

 Score = 46.4 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 9/147 (6%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
             +SSG    D  LG GG  +G  V + G   +GK+TL L  I     +     +V  E 
Sbjct: 73  PRISSGMQEFDRVLG-GGLVEGSAVLMGGHPGAGKSTLLLQAICHLAAS-VPALYVTGEE 130

Query: 106 ALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           +L  +   A++LG+  K+L +    + E+ +++ +         I+V+DS+  +   A+I
Sbjct: 131 SLQQVAMRAKRLGLPTKDLKMLSETSVERVMQVAEA----EKPRILVVDSIQVMH-MADI 185

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSI 190
           E   G      ++        K T +I
Sbjct: 186 ESAPGSVSQVRESAAYLTRFAKQTGTI 212


>gi|209946402|gb|ACI97432.1| spindle B [Drosophila melanogaster]
          Length = 341

 Score = 46.4 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 68/206 (33%), Gaps = 21/206 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT------LALHTIAQSQKTGGTCA 99
             VS     LD   G GG     I E+ G    GKT       L +    +    G   A
Sbjct: 86  SRVSXXCSALDRCTG-GGVVTRGITELCGAAGVGKTQLLXQLSLCVQLPRELGGLGKGVA 144

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           ++  E +  +    ++    +             + + +  + +  +   VI+ +  L  
Sbjct: 145 YICTESSFPARRLLQMSKACEKRHPEMELNFLGNIFV-ENHIEAEPLLACVINRIPRLMQ 203

Query: 160 RAEIEGDMGESLPG---------MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +  I   + +S+            +AR M +    L S   +  C +V +NQ+  + G  
Sbjct: 204 QHGIGLIIIDSVAAIFRLYNDYLERARHMRRLADALLSYADKYNCAVVCVNQVATRDG-- 261

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRV 236
               E    G         RL + RV
Sbjct: 262 --QDEIPCLGLQWAHLGRTRLRVSRV 285


>gi|325144180|gb|EGC66487.1| DNA repair protein RadA [Neisseria meningitidis M01-240013]
          Length = 473

 Score = 46.4 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 56/143 (39%), Gaps = 4/143 (2%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +    +G   LD  LG GG   G ++ + G    GK+TL L TIA+  ++     +V  
Sbjct: 82  EVPRNPTGMSELDRVLG-GGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQS-RKVLYVSG 139

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E +   +  R     L+          E  +E     ++    +++VIDS+  +      
Sbjct: 140 EESAQQVALRAQ--RLELPTEGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQTMYSDQIT 197

Query: 164 EGDMGESLPGMQARLMSQALRKL 186
                 S     A  +++  +++
Sbjct: 198 SAPGSVSQVRECAAQLTRMAKQM 220


>gi|323703790|ref|ZP_08115428.1| DNA repair protein RadA [Desulfotomaculum nigrificans DSM 574]
 gi|323531259|gb|EGB21160.1| DNA repair protein RadA [Desulfotomaculum nigrificans DSM 574]
          Length = 450

 Score = 46.4 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 66/191 (34%), Gaps = 11/191 (5%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E  ++G   LD  LG GG   G +V + G    GK+TL L          G   +V  E 
Sbjct: 64  ERYTTGLGELDRVLG-GGVVPGSLVLVGGDPGIGKSTLLLQAAFSIAAQVGVVLYVSGEE 122

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +   I  R     L+ L  +     E  + + +  ++      +++DS+  +        
Sbjct: 123 SARQIKMRA--RRLQALHPNLLLMAETDMSVVERCIQEINPVAVILDSIQTVFHPDVTSS 180

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
               +               +   +++S  I +F+     K G + G        + + +
Sbjct: 181 PGSVAQVRE--------CTGILMKVAKSTSIPIFVVGHVTKEGTLAGPRVLEHMVDTVLY 232

Query: 226 YSSVRLDIRRV 236
           +   R    R+
Sbjct: 233 FEGERHQSFRI 243


>gi|319410148|emb|CBY90484.1| DNA repair protein RadA (DNA repair protein Sms) [Neisseria
           meningitidis WUE 2594]
          Length = 459

 Score = 46.4 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 56/143 (39%), Gaps = 4/143 (2%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +    +G   LD  LG GG   G ++ + G    GK+TL L TIA+  ++     +V  
Sbjct: 68  EVPRNPTGMSELDRVLG-GGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQS-RKVLYVSG 125

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E +   +  R     L+          E  +E     ++    +++VIDS+  +      
Sbjct: 126 EESAQQVALRAQ--RLELPTEGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQTMYSDQIT 183

Query: 164 EGDMGESLPGMQARLMSQALRKL 186
                 S     A  +++  +++
Sbjct: 184 SAPGSVSQVRECAAQLTRMAKQM 206


>gi|300867081|ref|ZP_07111748.1| circadian clock protein KaiC [Oscillatoria sp. PCC 6506]
 gi|300334912|emb|CBN56914.1| circadian clock protein KaiC [Oscillatoria sp. PCC 6506]
          Length = 522

 Score = 46.4 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 71/219 (32%), Gaps = 33/219 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG   LD   G GGF K  I+   G   +GKT L    +  + 
Sbjct: 252 MRLTQRSSNV----RVSSGDKTLDEMCG-GGFFKDSIILATGATGTGKTLLVSKFLQNAC 306

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
             G        E +   ++       +            +L + P++   E  L+     
Sbjct: 307 ANGDRAMLFAYEESRAQLFRNAYSWGIDFEEMEQKGLLRILCTYPESAGLEDHLQNIKSE 366

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 367 IAEFKPSRIAIDSLSALA-------------RGVSNNSFRQFVIGVTGFAKQEEITGFFT 413

Query: 201 N---QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           N   Q      +      T T    +  Y  +R ++ R 
Sbjct: 414 NTSDQFMGSNSITDSHISTITDTIIMLQYVEIRGEMSRA 452



 Score = 40.2 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 56/177 (31%), Gaps = 10/177 (5%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK- 93
           L  +  +  G++ + +   G D  +  GG P GR   + G   +GKT  A+  +      
Sbjct: 8   LHHEVLVTPGVQKIRTMIEGFDD-ISHGGMPIGRTTLVSGTSGTGKTLFAVQFLYNGIMN 66

Query: 94  --TGGTCAFVDAEHALDSIYARKLGVDLKNLLIS------QPDTGEQALEITDMLVRSGA 145
               G     +         A   G DL+ L+              +  +I      S  
Sbjct: 67  FEEAGVFVTFEESPTDIIKNAYSFGWDLQRLIDEGKLFILDASPDPEGQDIVGNFDLSAL 126

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
           ++ I          R  I+           A ++ + + +L + + +     +   +
Sbjct: 127 IERIQYAIRKYKARRVSIDSVTAVFQQYDAASVVRREIFRLVARLKQVGATTIMTTE 183


>gi|218767901|ref|YP_002342413.1| DNA repair protein RadA [Neisseria meningitidis Z2491]
 gi|121051909|emb|CAM08215.1| putative DNA repair protein [Neisseria meningitidis Z2491]
          Length = 459

 Score = 46.4 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 56/143 (39%), Gaps = 4/143 (2%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +    +G   LD  LG GG   G ++ + G    GK+TL L TIA+  ++     +V  
Sbjct: 68  EVPRNPTGMSELDRVLG-GGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQS-RKVLYVSG 125

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E +   +  R     L+          E  +E     ++    +++VIDS+  +      
Sbjct: 126 EESAQQVALRAQ--RLELPTEGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQTMYSDQIT 183

Query: 164 EGDMGESLPGMQARLMSQALRKL 186
                 S     A  +++  +++
Sbjct: 184 SAPGSVSQVRECAAQLTRMAKQM 206


>gi|154151896|ref|YP_001405514.1| putative circadian clock protein, KaiC [Candidatus Methanoregula
           boonei 6A8]
 gi|154000448|gb|ABS56871.1| putative circadian clock protein, KaiC [Methanoregula boonei 6A8]
          Length = 232

 Score = 46.4 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
             + V  G  GLD  LG GG   G I  + G   +GKTT +L+ I    K G    ++  
Sbjct: 2   NSDRVKMGIPGLDEMLG-GGLLAGNICAVIGTYGTGKTTFSLNFIWDGLKRGERAIYISL 60

Query: 104 EHALDS--IYARKLGVDLKNL 122
           E   D    Y ++ G D++  
Sbjct: 61  EEREDRLLQYMKQKGWDVEPY 81


>gi|119600600|gb|EAW80194.1| hCG1989222, isoform CRA_l [Homo sapiens]
          Length = 330

 Score = 46.4 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 69/247 (27%), Gaps = 23/247 (9%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGT 97
             +     ++S+G   LD  L   G   G + EI G   SGKT + L   A         
Sbjct: 75  EELKTSTAILSTGIGSLDKLL-DAGLYTGEVTEIVGGPGSGKTQVCLCMAANVAHGLQQN 133

Query: 98  CAFVDAEHALDSIYARKL--------------GVDLKNLLISQPDTGEQALEITDMLVRS 143
             +VD+   L +    +L                 ++ +           L+     V  
Sbjct: 134 VLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLDVLQELRGTVAQ 193

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
                     V  +     +   +          LM Q  R+L +        +V  N +
Sbjct: 194 QVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLARDLGMAVVVTNHI 253

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
                           G +  F  S R+ +  +    +    +G +    + K+      
Sbjct: 254 TRDRDSGRL---KPALGRSWSFVPSTRILLDTI----EGAGASGGRRMACLAKSSRQPTG 306

Query: 264 KQVEFDI 270
            Q   DI
Sbjct: 307 FQEMVDI 313


>gi|108804997|ref|YP_644934.1| DNA repair protein RadA [Rubrobacter xylanophilus DSM 9941]
 gi|108766240|gb|ABG05122.1| DNA repair protein RadA [Rubrobacter xylanophilus DSM 9941]
          Length = 463

 Score = 46.4 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 6/138 (4%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            + +G   LD  LG GG   G +V + G    GK+TL L  +    + GG C  V  E +
Sbjct: 75  RIGTGIAELDRILG-GGLVPGSLVLVGGEPGVGKSTLLLQVM---GRLGGRCLMVSGEES 130

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
                       L           E  +++ +  +  G  +++V+DS+  L         
Sbjct: 131 --PRQVAMSARRLGVAGSGFEVLAETDVDVIEATILRGRPEVVVVDSIQTLYSPELAGAP 188

Query: 167 MGESLPGMQARLMSQALR 184
            G       A  + +  +
Sbjct: 189 GGVGQVRECAARLMRLAK 206


>gi|28869905|ref|NP_792524.1| hypothetical protein PSPTO_2718 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213967056|ref|ZP_03395206.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|28853150|gb|AAO56219.1| conserved protein of unknown function [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213928378|gb|EEB61923.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
          Length = 494

 Score = 46.4 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC--AFVDAEH 105
           +SSG   LD  LG GG   G    I GP  +GK+ ++L    Q+   G        D E 
Sbjct: 248 LSSGIRELDNLLG-GGIESGSSTLILGPAGTGKSLISLVFAVQAVARGERVGLFIFDEEM 306

Query: 106 ALDSIYARKLGVDLKNL 122
            L      KLG+DL+ L
Sbjct: 307 GLLFERMLKLGIDLRAL 323



 Score = 43.7 bits (101), Expect = 0.041,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 3/102 (2%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G  GLD  L  GG  +  +  + G   +GKTT+AL  +      G    ++        
Sbjct: 8   TGIEGLDDILS-GGLSRSHVFLLEGEPGTGKTTVALQFLQAGAAAGEISLYITLSETERE 66

Query: 110 IYARKL--GVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + A     G +L   +     T  ++L   +          +
Sbjct: 67  LRAGAASHGWELDPQIHIYELTPPESLLDAEHHQSLLYSSDL 108


>gi|325108406|ref|YP_004269474.1| circadian clock protein, KaiC [Planctomyces brasiliensis DSM 5305]
 gi|324968674|gb|ADY59452.1| putative circadian clock protein, KaiC [Planctomyces brasiliensis
           DSM 5305]
          Length = 529

 Score = 46.0 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 89/263 (33%), Gaps = 22/263 (8%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+G  GLD  L  GG+  GR+  + G   +GKTTLAL  +      G    ++    +
Sbjct: 40  RVSTGIPGLDNIL-RGGWVPGRLFLVDGAPGAGKTTLALQFLMDGVSQGEGALYITLAES 98

Query: 107 LDSIY--ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT------ 158
            D +   AR  G  L  + I +  +        D        ++ + ++  ++       
Sbjct: 99  ADEMAAVARSHGWSLDGIEIYEMPSVHGGNGNNDAYTLFHPAEVELANAAQSIAQQVDRF 158

Query: 159 -PRAEIEGDMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPE 215
            P+  +   + E  L         + L  L    +RS C ++ ++ +             
Sbjct: 159 GPKRVVIDSLSELRLIAQDPLRYRRQLLALKQFFARSGCTVLVLDDLSDDPSNRLLTIAH 218

Query: 216 TTTGGNALKFYSSVRLDIRRVGSIK-------DKDSITGNQTRVKVVKNKMASPFKQVEF 268
                 A++     R   RR+  +K               +T    V  ++ +     EF
Sbjct: 219 GVVRLEAVEMSFGPR--RRRLEVLKMREVDFRGGFHDYEIRTGGLDVFPRLVAAEHHAEF 276

Query: 269 DI-MYGEGISFFGELIDLGVKAS 290
           D      GI     L+  GV   
Sbjct: 277 DQSQISSGIDKLDRLLGGGVHCG 299



 Score = 44.8 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 1/79 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +SSG   LD  LG GG   G    I GP  SGKTTL       + + G   +    +  L
Sbjct: 281 ISSGIDKLDRLLG-GGVHCGTSTVITGPAGSGKTTLTSQYALAAAERGEKSSIFIFDERL 339

Query: 108 DSIYARKLGVDLKNLLISQ 126
            +  +R  G+++       
Sbjct: 340 GTFLSRADGLNMPIRKYVD 358


>gi|221218297|ref|YP_002524324.1| circadian clock protein KaiC [Rhodobacter sphaeroides KD131]
 gi|221163324|gb|ACM04290.1| circadian clock protein KaiC [Rhodobacter sphaeroides KD131]
          Length = 566

 Score = 46.0 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 76/207 (36%), Gaps = 22/207 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E ++SG   LD  +  GGF +G  + + G   +GK++LA H  A +   G    +   E 
Sbjct: 244 ERIASGVPDLDAMMAGGGFFRGSSILVSGVAGAGKSSLAAHFAAAACARGERAMYFSFEE 303

Query: 106 ALDS--IYARKLGVDLKNL--------LISQP--DTGEQALEITDMLVRSGAVDIIVIDS 153
           A D      R LG+DL           + ++P   + E  L +    V      ++V+D 
Sbjct: 304 AADQAVRNMRSLGLDLGRWRDAGLLRFMATRPTFYSLEMHLAVILREVMRFEPSVVVLDP 363

Query: 154 VAALTPRAE----------IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           ++A T   +          I   +           ++ +  + T+    S  +  ++  +
Sbjct: 364 ISAFTESGDRLEVQSMLLRIVDFLKNRGITGIFTHLAHSQNEATTDAGLSSLMDGWVLML 423

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVR 230
             ++   F           +   + VR
Sbjct: 424 NREVNGEFNRELYLLKARGMAHSNQVR 450


>gi|149377814|ref|ZP_01895546.1| predicted repair protein [Marinobacter algicola DG893]
 gi|149357929|gb|EDM46419.1| predicted repair protein [Marinobacter algicola DG893]
          Length = 459

 Score = 46.0 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 80/224 (35%), Gaps = 20/224 (8%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
             +SSG    D  LG GG  +G  + + G   +GK+TL L  +     +     +V  E 
Sbjct: 74  PRISSGMQEFDRVLG-GGLVEGSAILMGGHPGAGKSTLLLQAVCHLASS-VPALYVTGEE 131

Query: 106 ALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           +L  +   A++LG+  K+L +    + E+ +++ +         I+V+DS+  +      
Sbjct: 132 SLQQVAMRAKRLGLPTKDLKMLSETSVERVMQVAEA----EKPRILVVDSIQVMHVAESE 187

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS--PETTTGGN 221
                 S     A         LT    ++  IL  +  +     +              
Sbjct: 188 SAPGSVSQVRESAAY-------LTRFAKQTGTILFLVGHVTKDGSLAGPKVLEHMIDCSI 240

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
            L+  S  R    R   IK++     N+  V  +  +     K 
Sbjct: 241 LLEGSSDSRYRTLRG--IKNRFGAV-NELGVFAMLEQGLKEVKN 281


>gi|34556529|ref|NP_906344.1| DNA repair protein RadA [Wolinella succinogenes DSM 1740]
 gi|34482243|emb|CAE09244.1| DNA REPAIR PROTEIN RADA HOMOLOG DNA REPAIR PROTEIN SMS HOMOLOG
           [Wolinella succinogenes]
          Length = 447

 Score = 46.0 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 3/143 (2%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E ++  SS    LDI LG GG   G +  + G    GK+TL L       ++G    +V 
Sbjct: 65  ERVDKFSSCEEELDIVLG-GGIVPGGLYLVGGSPGVGKSTLLLKMAGNLARSGRPILYVS 123

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E +L  I AR     L  +  +     E ALE     + + + +++VIDS+  L  +  
Sbjct: 124 GEESLGQIRARA--ERLGVMSDALYLLNEIALENILEALETRSFELMVIDSIQTLYSQKV 181

Query: 163 IEGDMGESLPGMQARLMSQALRK 185
                  S        + +  ++
Sbjct: 182 SSAPGSVSQVREVTFELMRLAKE 204


>gi|300780456|ref|ZP_07090312.1| DNA repair protein RadA [Corynebacterium genitalium ATCC 33030]
 gi|300534566|gb|EFK55625.1| DNA repair protein RadA [Corynebacterium genitalium ATCC 33030]
          Length = 469

 Score = 46.0 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 51/157 (32%), Gaps = 9/157 (5%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+G   LD  LG G  P G +V + G    GK+TL L   ++    G   A  +   A
Sbjct: 73  RLSTGIGELDRVLGRGIVP-GSVVLLSGEPGVGKSTLLLEVASKWASAGADGADGEPRTA 131

Query: 107 LDSIYARKLG------VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL--T 158
           L                    L        E  L++    V     D++++DSV  +   
Sbjct: 132 LYVTAEESASQVRGRAERTGALQDRLFLAAESNLDVLFGHVDQVKPDLLIVDSVQTMQAP 191

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
               + G + +S     A         L   +     
Sbjct: 192 GVEGVAGGVAQSRAVTAALTSLAKSTNLPILLVGHVT 228


>gi|257882525|ref|ZP_05662178.1| DNA repair protein RadA [Enterococcus faecium 1,231,502]
 gi|294623056|ref|ZP_06701943.1| DNA repair protein RadA [Enterococcus faecium U0317]
 gi|257818183|gb|EEV45511.1| DNA repair protein RadA [Enterococcus faecium 1,231,502]
 gi|291597529|gb|EFF28693.1| DNA repair protein RadA [Enterococcus faecium U0317]
          Length = 456

 Score = 46.0 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 63/193 (32%), Gaps = 18/193 (9%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + +    + +    L+  LG GG   G +V I G    GK+TL L    Q    GG   +
Sbjct: 65  VPKKEPRIKTKLEELNRVLG-GGVVPGSMVLIGGDPGIGKSTLLLQVSQQLAAIGGKVLY 123

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E + + I  R     L ++        E  +      +   + D ++IDS+  +T  
Sbjct: 124 VSGEESAEQIKLRA--ERLGSINTEFYLYAETDMNEISRAIEHISPDYVIIDSIQTMTQP 181

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
                    S        + +          ++  I +FI     K G +        G 
Sbjct: 182 DITSVAGSVSQVRETTAELLKTA--------KTNGIAIFIVGHVTKEGSI-------AGP 226

Query: 221 NALKFYSSVRLDI 233
             L+      L  
Sbjct: 227 RMLEHMVDTVLYF 239


>gi|268592152|ref|ZP_06126373.1| DNA repair protein RadA [Providencia rettgeri DSM 1131]
 gi|291312551|gb|EFE53004.1| DNA repair protein RadA [Providencia rettgeri DSM 1131]
          Length = 461

 Score = 46.0 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 10/146 (6%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E +   ++G    D  LG GG   G  + I G   +GK+TL L T+    +      +V
Sbjct: 72  LEELPRFTTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTMCLLSRE-MKTLYV 129

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+   +L +    + EQ      +        ++VIDS+  +  
Sbjct: 130 TGEESLQQVAMRAHRLGLPTDSLNMLSETSIEQ----ICLTAEQEQPKLMVIDSIQVMH- 184

Query: 160 RAEIEGDMGE-SLPGMQARLMSQALR 184
            A+I+   G  +     A  +++  +
Sbjct: 185 MADIQSSPGSVAQVRETAAYLTRFAK 210


>gi|183600947|ref|ZP_02962440.1| hypothetical protein PROSTU_04558 [Providencia stuartii ATCC 25827]
 gi|188019275|gb|EDU57315.1| hypothetical protein PROSTU_04558 [Providencia stuartii ATCC 25827]
          Length = 462

 Score = 46.0 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 10/146 (6%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E +   ++G    D  LG GG   G  + I G   +GK+TL L T+    +      +V
Sbjct: 72  LEELPRFTTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTMCLLSRE-MKTLYV 129

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+   +L +    + EQ      +        ++VIDS+  +  
Sbjct: 130 TGEESLQQVAMRAHRLGLPTDSLNMLSETSIEQ----ICLTAEQEQPKLMVIDSIQVMH- 184

Query: 160 RAEIEGDMGE-SLPGMQARLMSQALR 184
            A+I+   G  +     A  +++  +
Sbjct: 185 MADIQSSPGSVAQVRETAAYLTRFAK 210


>gi|170098975|ref|XP_001880706.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164644231|gb|EDR08481.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 305

 Score = 46.0 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 48  VSSGSLGLDI-ALGIGGFPKGRIVEIYGPESSGKTTLALHTI--AQSQKTGGTCAFVDAE 104
           +S+G   LD   LG+GG     ++EI G   SGKT  AL+ I    +     T A++D  
Sbjct: 86  LSTGDPQLDANLLGLGGR---TVIEISGDRGSGKTAFALNVILHHLTCHPNATAAWIDTT 142

Query: 105 HALDSIYARKL 115
                  A ++
Sbjct: 143 GDFSPKRAIQV 153


>gi|33863685|ref|NP_895245.1| circadian clock protein KaiC [Prochlorococcus marinus str. MIT
           9313]
 gi|54036135|sp|Q7V5W7|KAIC_PROMM RecName: Full=Circadian clock protein kinase kaiC
 gi|33635268|emb|CAE21593.1| possible circadian clock protein KaiC [Prochlorococcus marinus str.
           MIT 9313]
          Length = 499

 Score = 46.0 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 61/185 (32%), Gaps = 30/185 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       +SSG   LD   G GGF K  I+ + G   +GKT L    I  + 
Sbjct: 248 MRLTQRSSNV----RISSGVPNLDEMCG-GGFFKDSIILVTGATGTGKTLLVSKFIEDAF 302

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
           +          E +   +        +            ++ + P++   E  LEI    
Sbjct: 303 RNQERAILFAYEESRAQLLRNATSWGIDFEEMERQGLLKIICAYPESTGLEDHLEIIKTA 362

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       + IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 363 IGQFKPSRMAIDSLSALA-------------RGVSLNAFRQFVIGVTGYAKQEEIAGFFT 409

Query: 201 NQMRM 205
           N    
Sbjct: 410 NTAEE 414



 Score = 44.4 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 61/201 (30%), Gaps = 13/201 (6%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---G 95
           GS    ++ + +G  G D     GG P GR   I G   +GKT  +LH +          
Sbjct: 8   GSSHMQVQKLPTGIEGFDDIC-HGGLPSGRSTLISGTSGTGKTVFSLHFLHNGITQFDEP 66

Query: 96  GTCAFVDAEHALDSIYARKLGVDL------KNLLISQPDTGEQALEITDMLVRSGAVDII 149
           G     +   +     +   G +L        L I          ++      SG ++ I
Sbjct: 67  GIFVTFEESPSDILRNSASFGWNLQEMVEQDKLFILDASPDPDGQDVAGSFDLSGLIERI 126

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
               V     R  I+     +    Q   +S   R++   I+R K I V       +I  
Sbjct: 127 NYAIVKYKAKRVAIDSM---TAVFQQYDAISVVRREIFRLIARLKVIGVTTVMTTERIDE 183

Query: 210 MFGSPETTTGGNALKFYSSVR 230
                              +R
Sbjct: 184 YGPIARYGVEEFVSDNVVILR 204


>gi|13476500|ref|NP_108070.1| DNA repair protein RadA [Mesorhizobium loti MAFF303099]
 gi|14027261|dbj|BAB54215.1| DNA repair protein; RadA [Mesorhizobium loti MAFF303099]
          Length = 467

 Score = 46.0 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 69/210 (32%), Gaps = 2/210 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG  + L +     E    + SG   LD A G GGF +G  + + G    GK+TL     
Sbjct: 54  KGRAVVLTTLSGDIEDAPRIISGIGELDRATG-GGFVRGSALLVGGDPGIGKSTLLTQAA 112

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A     G    +V  E A+  I  R   + + +  +          +I   +      D+
Sbjct: 113 AALASRGHRIVYVSGEEAVAQIRLRAQRLGVADSPVELAA-ETNVEDILATIADGKRPDL 171

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +++DS+  L            +     A+ M +  +   ++I     +         ++ 
Sbjct: 172 VILDSIQTLWTDLADSAPGTVTQVRAAAQAMIRYAKSTGAAIVLVGHVTKEGQIAGPRVV 231

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
                      G     Y  +R    R G 
Sbjct: 232 EHMVDGVLYFEGEGGHHYRILRTVKNRFGP 261


>gi|261392851|emb|CAX50432.1| DNA repair protein RadA (DNA repair protein Sms) [Neisseria
           meningitidis 8013]
          Length = 459

 Score = 46.0 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 56/143 (39%), Gaps = 4/143 (2%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +    +G   LD  LG GG   G ++ + G    GK+TL L TIA+  ++     +V  
Sbjct: 68  EVPRNPTGMSELDRVLG-GGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQS-RKVLYVSG 125

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E +   +  R     L+          E  +E     ++    +++VIDS+  +      
Sbjct: 126 EESAQQVALRAQ--RLELPTEGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQTMYSDQIT 183

Query: 164 EGDMGESLPGMQARLMSQALRKL 186
                 S     A  +++  +++
Sbjct: 184 SAPGSVSQVRECAAQLTRMAKQM 206


>gi|256823335|ref|YP_003147298.1| DNA repair protein RadA [Kangiella koreensis DSM 16069]
 gi|256796874|gb|ACV27530.1| DNA repair protein RadA [Kangiella koreensis DSM 16069]
          Length = 454

 Score = 46.0 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 4/144 (2%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
              +  +SSG   LD  LG GG   G +V + G    GK+T+ L ++ +  +T  +  +V
Sbjct: 68  LSELPRMSSGLSELDRVLG-GGLVPGSVVLMGGDPGIGKSTILLQSLCKISETD-SVLYV 125

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
             E +L  +  R   + L     S   T  Q  +IT   +      ++V+DS+  +    
Sbjct: 126 TGEESLQQVTMRAQRLGLATGDFSL-LTETQVEQITTQALMQK-PKVMVVDSIQTIYTEM 183

Query: 162 EIEGDMGESLPGMQARLMSQALRK 185
                 G +     A  + +  ++
Sbjct: 184 LQSAPGGVAQVRESAAQLVRFAKQ 207


>gi|166365916|ref|YP_001658189.1| circadian clock protein KaiC [Microcystis aeruginosa NIES-843]
 gi|166088289|dbj|BAG02997.1| circadian clock protein KaiC homolog [Microcystis aeruginosa
           NIES-843]
          Length = 520

 Score = 46.0 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 72/219 (32%), Gaps = 33/219 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       +SSG   LD   G GGF K  I+   G   +GKT L    + +  
Sbjct: 253 MRLTQRSSNV----RISSGVKTLDDMCG-GGFFKDSIILATGATGTGKTLLVSKFLEEGC 307

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
           + G        E +   +        +            LL S P++   E  L++    
Sbjct: 308 RRGERAILFAYEESRAQLSRNASSWGIDFEEMERKGLLKLLCSYPESAGLEDHLQMIKSE 367

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 368 ISEFKPSRIAIDSLSALA-------------RGVTNNAFRQFVIGVTGYAKQEEITGFFT 414

Query: 201 N---QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           N   Q      +      T T    +  Y  +R ++ R 
Sbjct: 415 NTTDQFMGAHSITESHISTITDTILMLQYVEIRGEMSRA 453



 Score = 37.5 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 6/86 (6%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ----SQKTGGTC 98
           +G+  + +   G D  +  GG P GR   + G   +GKT LA+  +          G   
Sbjct: 17  KGVRKIRTLIEGFDE-ITHGGLPMGRTTLVSGTSGTGKTLLAVQFLYHGIKYFDYPGLFV 75

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLI 124
            F ++   +    A   G DL+ L+ 
Sbjct: 76  TFEESPTDIIQN-AYSFGWDLEELID 100


>gi|119485078|ref|ZP_01619463.1| circadian clock protein KaiC [Lyngbya sp. PCC 8106]
 gi|119457306|gb|EAW38431.1| circadian clock protein KaiC [Lyngbya sp. PCC 8106]
          Length = 522

 Score = 46.0 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 73/219 (33%), Gaps = 33/219 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG+  LD   G GGF K  I+   G   +GKT L    I  + 
Sbjct: 253 MRLTQRSSNV----RVSSGNETLDQMCG-GGFFKDSIILATGATGTGKTLLVSVFINNAC 307

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDT--GEQALEITDML 140
           K G        E +   +        +            +L S P++   E  L+I    
Sbjct: 308 KNGERAILFAYEESRAQLLRNANSWGIDFEDMEQKGLLRILCSYPESAGVEDHLQIIKSE 367

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 368 ITEFKPARIAIDSLSALA-------------RGVSNNAFRQFVIGVTGYAKQEEITGFFT 414

Query: 201 N---QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           N   Q      +      T T    +  Y  +R ++ R 
Sbjct: 415 NTTDQFMGSNSITDSHISTITDTILMLQYVEIRGEMSRA 453



 Score = 36.7 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 59/175 (33%), Gaps = 12/175 (6%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT----IAQSQK 93
            G    G++ + +   G D  +  GG P GR   + G   +GKT  A+      I    +
Sbjct: 12  NGRKLIGVQKIRTMVEGFDD-ISHGGMPLGRTTLVSGTSGTGKTLFAVQFLYNGIINFDE 70

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKN------LLISQPDTGEQALEITDMLVRSGAVD 147
            G    F ++ + +    A   G DL+       L I       +  +I      S  ++
Sbjct: 71  PGIFVTFEESPNDIIKN-ASSFGWDLQELVEQGKLFILDASPDPEGQDIVGNFDLSALIE 129

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
            I          R  I+           A ++ + + +L + + +     +   +
Sbjct: 130 RIQYAIRKYKARRVSIDSVTAVFQQYEAAGVVRREIFRLVARLKQVGATTIMTTE 184


>gi|317125371|ref|YP_004099483.1| DnaB domain protein helicase [Intrasporangium calvum DSM 43043]
 gi|315589459|gb|ADU48756.1| DnaB domain protein helicase domain protein [Intrasporangium calvum
           DSM 43043]
          Length = 346

 Score = 46.0 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           V  +G   LD  L  GGF  G +V + G   +GKTTL       +   GGT      EH 
Sbjct: 32  VHPTGFAALDATL-TGGFRSGELVLVGGAAGNGKTTLGFQFARNAVAAGGTALVFSYEHE 90

Query: 107 LDSIYARKLGVD 118
             ++  R + ++
Sbjct: 91  AHTLLERLISME 102


>gi|281349378|gb|EFB24962.1| hypothetical protein PANDA_005235 [Ailuropoda melanoleuca]
          Length = 253

 Score = 46.0 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 70/200 (35%), Gaps = 33/200 (16%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           Q+Q  YG    M++ +  S+      +++    LD AL  GG   G + EI GP   GKT
Sbjct: 63  QMQTAYG----MKMRTSASLSPA--FLATTLSALDEAL-HGGVACGSLTEITGPPGCGKT 115

Query: 82  TLALHTI------AQSQKTGGTCAFVDAEHALDSIYARKL------------------GV 117
              +                G   ++D E A  +    ++                    
Sbjct: 116 QFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSS 175

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
            +        D   + ++  +  + S  V +++IDSVA++  R E +  +  +    + +
Sbjct: 176 KVHLYRELSCDEVLRRIDSLEEEIISKGVKLVIIDSVASVV-RKEFDTQLQGN-MRERNK 233

Query: 178 LMSQALRKLTSSISRSKCIL 197
            +++    L          +
Sbjct: 234 FLAREAASLKYLAEEFSIPV 253


>gi|217978913|ref|YP_002363060.1| Non-specific serine/threonine protein kinase [Methylocella
           silvestris BL2]
 gi|217504289|gb|ACK51698.1| Non-specific serine/threonine protein kinase [Methylocella
           silvestris BL2]
          Length = 504

 Score = 46.0 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 3/99 (3%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           +G        +S+GS GLD  L  GG P  R+  + G   SGKTTLAL  + +    G  
Sbjct: 2   KGGEPLDASRISTGSAGLDAVL-RGGLPDNRVYLLEGAPGSGKTTLALRYLLEGVGRGER 60

Query: 98  CAFVDAEHALDSIYARKL--GVDLKNLLISQPDTGEQAL 134
             +V      + + A     G  L  + + +  +  + L
Sbjct: 61  VLYVTLSETSEELEAVAASHGWSLDGVDLFELASANEVL 99



 Score = 44.4 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            SG + LD  L  GG  +G    + GP  +GKTT+AL  +  + + G   A  + +  + 
Sbjct: 256 PSGVIELDNLLA-GGPLRGTSTLVTGPAGAGKTTVALQYLYAACERGEASALFEFDERVG 314

Query: 109 S--IYARKLGVDLKNLLISQPDTGEQ 132
           +  + AR +G+DL+  + S   T  Q
Sbjct: 315 TLLVRARAMGLDLQKHIDSGVLTIMQ 340


>gi|146338558|ref|YP_001203606.1| circadian clock protein KaiC [Bradyrhizobium sp. ORS278]
 gi|146191364|emb|CAL75369.1| Circadian clock protein kinase kaiC [Bradyrhizobium sp. ORS278]
          Length = 585

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 70/204 (34%), Gaps = 12/204 (5%)

Query: 31  AIMQLGSQGSIFEG-IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
            +M + S G   +   E VS+G   LD  L   G+ KG  + I G   SGK+T++ H   
Sbjct: 242 TVMPITSSGLAHDAWTERVSTGIADLDDMLEGRGYYKGSSILISGMAGSGKSTMSAHFAN 301

Query: 90  QSQKTGGTCAFVDAEHALDSIY--ARKLGVDLKNLLIS---QPDTGEQALEITDMLVRSG 144
                G  C +   E +   I    R +G+DL+  +     +       L   +  + + 
Sbjct: 302 SICAGGQRCIYFALEESPQQIIRNMRSVGLDLQQWVDRGLLRFSARRPNLYGLETHLAAM 361

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
             ++   D      P A +   +   +    A  +     +L   +       +F N   
Sbjct: 362 HREVKEFD------PAAVVVDPISSLMGAGLAGDVHSMTLRLIDFLKARGVTALFTNLGG 415

Query: 205 MKIGVMFGSPETTTGGNALKFYSS 228
                +    + ++  +      +
Sbjct: 416 GTAETVTTEMQISSLTDTWLLLYN 439



 Score = 40.2 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
          I    +G  GLD     GG P+GR   + G    GKT  A+  +  
Sbjct: 17 IAKSPTGIDGLDEV-TFGGLPRGRPTLLCGAAGCGKTLFAMTFLYN 61


>gi|127513030|ref|YP_001094227.1| hypothetical protein Shew_2102 [Shewanella loihica PV-4]
 gi|126638325|gb|ABO23968.1| hypothetical protein Shew_2102 [Shewanella loihica PV-4]
          Length = 276

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 11/133 (8%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEI-YGPESSGKTTLALHTIAQSQKT-------GGTCAFV 101
           SG   L+  LG+GG+P   + EI    E  G+ +LAL  + +            G  + V
Sbjct: 32  SGYPELNRHLGLGGWPSQGLCEIFCSSEGIGELSLALPLMRRLIPRQSREGSAAGLVSLV 91

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII---VIDSVAALT 158
              H          G+D+  LL     T ++ L   + ++ SGA  ++   + D   +  
Sbjct: 92  APPHVPYPQSLAMQGIDVSRLLWVDTQTPKEQLWALEQILTSGASPLVLCWLEDLSVSQA 151

Query: 159 PRAEIEGDMGESL 171
            R ++  + GESL
Sbjct: 152 RRLQLACEKGESL 164


>gi|119513439|ref|ZP_01632468.1| circadian clock protein KaiC [Nodularia spumigena CCY9414]
 gi|119461911|gb|EAW42919.1| circadian clock protein KaiC [Nodularia spumigena CCY9414]
          Length = 521

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 60/183 (32%), Gaps = 30/183 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG   LD   G GGF K  I+   G   +GKT L    +    
Sbjct: 251 MRLTQRSSNV----RVSSGVKTLDEMCG-GGFFKDSIILATGATGTGKTLLVSKFLQDGC 305

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
           + G        E +   +        +            ++ + P++   E  L+I    
Sbjct: 306 RNGEQAILFAYEESRAQLSRNAYSWGIDFEELERQGLLKIICTYPESTGLEDHLQIIKSE 365

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 366 IAVFKPSRIAIDSLSALA-------------RGVSNNAFRQFVIGVTGYAKQEEITGFFT 412

Query: 201 NQM 203
           N  
Sbjct: 413 NTT 415



 Score = 40.2 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 50/149 (33%), Gaps = 22/149 (14%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT--- 94
             +   G+E + +   G D  +  GG P GR   + G   +GKT  +L  +         
Sbjct: 10  NNTPIAGVEKIRTMIEGFDD-ISHGGLPIGRTTLVSGTSGTGKTLFSLQFLYNGITRFDE 68

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLIS------QPDTGEQALEI------------ 136
            G     +   +     A+  G +L++L+              +  +I            
Sbjct: 69  PGVFVTFEESPSDIIKNAQIFGWNLQHLIDEGKLFILDASPDPEGQDIVGNFDLSALIER 128

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
               +R      + IDS+ A+  + E  G
Sbjct: 129 LQYAIRKYKAQRVSIDSITAVFQQYEAMG 157


>gi|217416415|ref|NP_002869.3| DNA repair protein RAD51 homolog 4 isoform 1 [Homo sapiens]
 gi|6174940|sp|O75771|RA51D_HUMAN RecName: Full=DNA repair protein RAD51 homolog 4; AltName:
           Full=R51H3; AltName: Full=RAD51 homolog D; AltName:
           Full=RAD51-like protein 3; AltName: Full=TRAD
 gi|3292970|emb|CAA75681.1| R51H3 [Homo sapiens]
 gi|15680155|gb|AAH14422.1| RAD51-like 3 (S. cerevisiae) [Homo sapiens]
 gi|47777669|gb|AAT38112.1| RAD51-like 3 (S. cerevisiae) [Homo sapiens]
 gi|119600587|gb|EAW80181.1| hCG1989222, isoform CRA_b [Homo sapiens]
 gi|119600602|gb|EAW80196.1| hCG1989222, isoform CRA_b [Homo sapiens]
 gi|123983006|gb|ABM83244.1| RAD51-like 3 (S. cerevisiae) [synthetic construct]
 gi|123997689|gb|ABM86446.1| RAD51-like 3 (S. cerevisiae) [synthetic construct]
 gi|208967246|dbj|BAG73637.1| RAD51-like 3 [synthetic construct]
          Length = 328

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 69/247 (27%), Gaps = 23/247 (9%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGT 97
             +     ++S+G   LD  L   G   G + EI G   SGKT + L   A         
Sbjct: 73  EELKTSTAILSTGIGSLDKLL-DAGLYTGEVTEIVGGPGSGKTQVCLCMAANVAHGLQQN 131

Query: 98  CAFVDAEHALDSIYARKL--------------GVDLKNLLISQPDTGEQALEITDMLVRS 143
             +VD+   L +    +L                 ++ +           L+     V  
Sbjct: 132 VLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLDVLQELRGTVAQ 191

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
                     V  +     +   +          LM Q  R+L +        +V  N +
Sbjct: 192 QVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLARDLGMAVVVTNHI 251

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
                           G +  F  S R+ +  +    +    +G +    + K+      
Sbjct: 252 TRDRDSGRL---KPALGRSWSFVPSTRILLDTI----EGAGASGGRRMACLAKSSRQPTG 304

Query: 264 KQVEFDI 270
            Q   DI
Sbjct: 305 FQEMVDI 311


>gi|255725148|ref|XP_002547503.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240135394|gb|EER34948.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 518

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 62/169 (36%), Gaps = 26/169 (15%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66
             I D  K LE  L Q++      +I +L          E +++G   +D  LG GG P 
Sbjct: 56  KEINDYYKTLEQDL-QVEPS----SIEKLLES-------EFINTGLPNIDTELG-GGIPL 102

Query: 67  GRIVEIYGPESSGKTTLALHTI--AQSQKTGGTCAFVDAEHALDSIYARKL-----GVDL 119
           G + E++G    GK+      +   + Q        +  E  L++   +         DL
Sbjct: 103 GEVTEVFGASGCGKSHFLFQLLANCRKQYPMSENVHISTESFLETKRLKDFLGSNKKSDL 162

Query: 120 KNLLISQPDTGEQALEI------TDMLVRSGAVDIIVIDSVAALTPRAE 162
            ++        E    I        +   +G   ++VIDS+A    R +
Sbjct: 163 DSISYIHCQDLESQDHILYTQLPLKLSQNNGKTKLVVIDSIAQHFRRED 211


>gi|114668137|ref|XP_523603.2| PREDICTED: RAD51-like 3 isoform 8 [Pan troglodytes]
 gi|114668139|ref|XP_001174459.1| PREDICTED: RAD51-like 3 isoform 7 [Pan troglodytes]
          Length = 328

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 69/247 (27%), Gaps = 23/247 (9%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGT 97
             +     ++S+G   LD  L   G   G + EI G   SGKT + L   A         
Sbjct: 73  EELKTSTAILSTGIGSLDKLL-DAGLYTGEVTEIVGGPGSGKTQVCLCMAANVAHGLQQN 131

Query: 98  CAFVDAEHALDSIYARKL--------------GVDLKNLLISQPDTGEQALEITDMLVRS 143
             +VD+   L +    +L                 ++ +           L+     V  
Sbjct: 132 VLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLDVLQELRGTVAQ 191

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
                     V  +     +   +          LM Q  R+L +        +V  N +
Sbjct: 192 QVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLARDLGMAVVVTNHI 251

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
                           G +  F  S R+ +  +    +    +G +    + K+      
Sbjct: 252 TRDRDSGRL---KPALGRSWSFVPSTRILLDTI----EGAGASGGRRMACLAKSSRQPTG 304

Query: 264 KQVEFDI 270
            Q   DI
Sbjct: 305 FQEMVDI 311


>gi|330879918|gb|EGH14067.1| putative kinase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 492

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 60/167 (35%), Gaps = 17/167 (10%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA- 103
           I  +++G  GLD  LG GG P+     I GP   GKTTLA   +           F    
Sbjct: 7   INRLATGVPGLDEVLG-GGLPEFSFNLIAGPPGCGKTTLAHQMMFALATPERPALFFTVL 65

Query: 104 -EHALDSIYARKLGVDLKNLLISQ------------PDTGEQALEITDMLVRSGAVDIIV 150
            E  L  +  ++      +  ++Q                ++ L      V + +  ++ 
Sbjct: 66  GEPPLKMLRYQQQFDFFDSQAVNQSIRYVNLADDTLAGDLDEVLRRIVSDVEAFSPALVF 125

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQAR--LMSQALRKLTSSISRSKC 195
           +DS  ++   ++ + +   +LP    +  ++    +  T  I     
Sbjct: 126 VDSFRSVVLASQTQDNPNNNLPQFVQQLGMLMTTWQATTFLIGEYFT 172



 Score = 43.7 bits (101), Expect = 0.051,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I+ ++ G   LD  LG GG P+G  + + GP  SGK+ LA   +A+  + G T      
Sbjct: 244 PIKRLNMGVARLDEMLG-GGLPRGYSLLVAGPSGSGKSILAATFLAEGARNGETGVIAVF 302

Query: 104 EH 105
           E 
Sbjct: 303 EQ 304


>gi|157412489|ref|YP_001483355.1| DNA repair protein RadA [Prochlorococcus marinus str. MIT 9215]
 gi|157387064|gb|ABV49769.1| putative DNA repair protein RadA [Prochlorococcus marinus str. MIT
           9215]
          Length = 453

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 83/230 (36%), Gaps = 31/230 (13%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + I   +SG   +D  LG GG   G +V + G    GK+T+ L +  +         +V 
Sbjct: 65  KKISRFTSGFKEIDRVLG-GGIVPGSVVLLGGEPGIGKSTIVLQSAGKI-SLNEKVLYVT 122

Query: 103 AEHALDS--IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           AE +L+   I   +L  D   L I         L +    ++S      +IDS+ A+   
Sbjct: 123 AEESLEQVKIRWERLNQDSNELKIFAETN----LSLIMEEIKSVNPSFAIIDSIQAIHNH 178

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
                    S     +  +         +++++  I + I     K G +        G 
Sbjct: 179 EMESSPGSVSQVRACSSELQ--------NLAKNNNISLLIIGHVTKDGAL-------AGP 223

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
             L+    V ++         +     +   ++ +KN+  S F+   F++
Sbjct: 224 KTLEHLVDVVINF--------EGDKVSSHRLLRSIKNRFGSTFEIGIFEM 265


>gi|124022254|ref|YP_001016561.1| circadian clock protein KaiC [Prochlorococcus marinus str. MIT
           9303]
 gi|123962540|gb|ABM77296.1| possible circadian clock protein KaiC [Prochlorococcus marinus str.
           MIT 9303]
          Length = 488

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 61/185 (32%), Gaps = 30/185 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       +SSG   LD   G GGF K  I+ + G   +GKT L    I  + 
Sbjct: 237 MRLTQRSSNV----RISSGVPHLDEMCG-GGFFKDSIILVTGATGTGKTLLVSKFIEDAF 291

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
           +          E +   +        +            ++ + P++   E  LEI    
Sbjct: 292 RNKERAVLFAYEESRAQLLRNATSWGIDFEEMESEGLLKIICAYPESTGLEDHLEIIKTE 351

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       + IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 352 IGQFKPSRMAIDSLSALA-------------RGVSLNAFRQFVIGVTGYAKQEEIAGFFT 398

Query: 201 NQMRM 205
           N    
Sbjct: 399 NTAEE 403



 Score = 43.3 bits (100), Expect = 0.061,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 59/196 (30%), Gaps = 13/196 (6%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---GGTCAF 100
            ++ + +G  G D     GG P GR   I G   +GKT  +LH +          G    
Sbjct: 2   QVQKLPTGIEGFDDIC-HGGLPTGRSTLISGTSGTGKTVFSLHFLHNGITQFDEPGIFVT 60

Query: 101 VDAEHALDSIYARKLGVDL------KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
            +   +     +   G +L        L I          ++      SG ++ I    V
Sbjct: 61  FEESPSDILRNSASFGWNLQEMVEQDKLFILDASPDPDGQDVAGSFDLSGLIERINYAIV 120

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
                R  I+     +    Q   +S   R++   I+R K I V       +I       
Sbjct: 121 KYKAKRVAIDSM---TAVFQQYDAISVVRREIFRLIARLKVIGVTTVMTTERIDEYGPIA 177

Query: 215 ETTTGGNALKFYSSVR 230
                         +R
Sbjct: 178 RYGVEEFVSDNVVILR 193


>gi|108763224|ref|YP_634737.1| hypothetical protein MXAN_6619 [Myxococcus xanthus DK 1622]
 gi|108467104|gb|ABF92289.1| conserved hypothetical protein [Myxococcus xanthus DK 1622]
          Length = 500

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 6/96 (6%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI-AQSQKTGGTCAFVDAE 104
           E +S+G  GLD  L  GGF K R   + G   SGKT  A       +++ GG   ++   
Sbjct: 10  ERISTGIPGLDTVL-HGGFRKARTYMLMGLPGSGKTIFANQVCFHHAKRHGGRVLYL--- 65

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
             L +    +L  +L +L    P     A+      
Sbjct: 66  -TLLAESHTELVGNLSSLSYFDPTLLPNAITYLSAF 100



 Score = 41.0 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 5/77 (6%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC---AFVDAEHAL 107
           G  G+D  L  GG  +G    + GP  SGKT L L+ +A+  + G      AF D+   +
Sbjct: 251 GIPGMDAML-TGGMAQGSTTILLGPSGSGKTLLGLNFLAEGARRGERVHFFAFYDSPERM 309

Query: 108 DSIYARKLGVDLKNLLI 124
            +  A  +G+DLK L+ 
Sbjct: 310 VAQAA-GIGLDLKPLID 325


>gi|310817892|ref|YP_003950250.1| RecA bacterial DNA recombination family protein [Stigmatella
           aurantiaca DW4/3-1]
 gi|309390964|gb|ADO68423.1| RecA bacterial DNA recombination family protein [Stigmatella
           aurantiaca DW4/3-1]
          Length = 502

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 51/154 (33%), Gaps = 9/154 (5%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           G   LD  L  GG  +G    I GP  SGKT L L  ++     G    +          
Sbjct: 248 GVPELDGML-RGGLQRGSATLIMGPSGSGKTLLGLQFLSHGANQGEPSLYF----GFYES 302

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL----TPRAEIEGD 166
             R +G      L          LE+         +D + +  ++A+      R  I+G 
Sbjct: 303 PPRLMGKGESIGLDMAGAMRGGMLEMIWQPPVELVLDALAVKILSAIRRRGVQRLLIDGL 362

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +G     +    +++     T+ +       VF 
Sbjct: 363 VGFKESTVHPERINRFFAAFTNELRALDVTTVFT 396



 Score = 40.6 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            ++ + SG LGLD  L  GGF +G    I G   +GKT L           GG   +V
Sbjct: 5   SLQRIPSGVLGLDAIL-DGGFLQGGTYIIAGMPGTGKTILGNQICFHHVAHGGRAVYV 61


>gi|194740846|ref|XP_001952901.1| GF17509 [Drosophila ananassae]
 gi|190625960|gb|EDV41484.1| GF17509 [Drosophila ananassae]
          Length = 345

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 81/237 (34%), Gaps = 21/237 (8%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGGTCAFVD 102
             V+ G   LD   G GG     I EI+G  S GKT L LH     Q   + GG    V 
Sbjct: 86  SRVTFGCSALDRCTG-GGVVTRGITEIFGGYSVGKTHLLLHLSLGVQLPRELGGLGKGVA 144

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI--IVIDSVAALTPR 160
                    AR+L    K      P+T    L    + V+  A  +   V + ++ L  +
Sbjct: 145 YICTGSPFPARRLLHISKTWEQRYPNTKLNFLANVMVEVQKDAKSLMDCVNNRLSDLFQQ 204

Query: 161 AEIEGDMGESLP---------GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
             I   + +S+            +AR +      L S   +  C +V +N+    I    
Sbjct: 205 HGIGLIVIDSVAAVFRDCKDFNQRARDLRSLTNTLLSYSEKYNCAVVCVNEAVSSIDGD- 263

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
           G  +   G          RL + +    + K    G++         M SP    +F
Sbjct: 264 GDDQAPLGLQ-WAHLGRTRLRVTK----EPKQHKLGDELFTVRRLEVMYSPETPNDF 315


>gi|163732019|ref|ZP_02139465.1| predicted repair protein [Roseobacter litoralis Och 149]
 gi|161394317|gb|EDQ18640.1| predicted repair protein [Roseobacter litoralis Och 149]
          Length = 453

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 82/248 (33%), Gaps = 29/248 (11%)

Query: 28  GK-GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           GK G+ ++L +  +        + G   LD  LG GG      + + G    GK+TL L 
Sbjct: 48  GKRGSSVKLTNLSTEEAPPPRTTCGIKELDRVLG-GGLVAASAILVGGDPGIGKSTLLLQ 106

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
             AQ  ++G    +V  E A   +  R   + L +  +         L      + +   
Sbjct: 107 AAAQFARSGLKTIYVSGEEASAQVRMRAQRLGLTDAPVQLAAETN--LRDILTTLEAEKP 164

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            + +IDS+  +            S     A        +LTS   R    ++ +  +   
Sbjct: 165 QLAIIDSIQTMWADNVESAPGSVSQVRAAA-------YELTSFAKRKGISVILVGHVTKD 217

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV-KVVKNKMASPFKQ 265
             +         G   ++      L               G+Q R+ + VKN+     + 
Sbjct: 218 GQI--------AGPRVVEHMVDTVLYFEGER---------GHQFRILRAVKNRFGPADEI 260

Query: 266 VEFDIMYG 273
             F++  G
Sbjct: 261 GVFEMTGG 268


>gi|115373910|ref|ZP_01461201.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|115369038|gb|EAU67982.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
          Length = 468

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 51/154 (33%), Gaps = 9/154 (5%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           G   LD  L  GG  +G    I GP  SGKT L L  ++     G    +          
Sbjct: 214 GVPELDGML-RGGLQRGSATLIMGPSGSGKTLLGLQFLSHGANQGEPSLYF----GFYES 268

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL----TPRAEIEGD 166
             R +G      L          LE+         +D + +  ++A+      R  I+G 
Sbjct: 269 PPRLMGKGESIGLDMAGAMRGGMLEMIWQPPVELVLDALAVKILSAIRRRGVQRLLIDGL 328

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +G     +    +++     T+ +       VF 
Sbjct: 329 VGFKESTVHPERINRFFAAFTNELRALDVTTVFT 362


>gi|88854759|ref|ZP_01129425.1| alkylation damage DNA repair protein [marine actinobacterium
           PHSC20C1]
 gi|88815920|gb|EAR25776.1| alkylation damage DNA repair protein [marine actinobacterium
           PHSC20C1]
          Length = 451

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 3/131 (2%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            SG    D  LG GG   G  + + G    GK+TL L   +++  +G    +V AE ++ 
Sbjct: 72  PSGIAEFDRVLG-GGVVPGAAILLSGEPGVGKSTLLLEVASRAAASGQRVLYVTAEESVS 130

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +  R    +  +  +      +  L      +      ++++DSV  +   A      G
Sbjct: 131 QVRLRAERTNALHPSLYLAAETD--LGTILGQIDHVKPQLVIVDSVQTVASAATEGIAGG 188

Query: 169 ESLPGMQARLM 179
            S     A  +
Sbjct: 189 PSQVREVASTL 199


>gi|319784445|ref|YP_004143921.1| DNA repair protein RadA [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317170333|gb|ADV13871.1| DNA repair protein RadA [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 467

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 69/210 (32%), Gaps = 2/210 (0%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG  + L +     E    + SG   LD A G GGF +G  + + G    GK+TL     
Sbjct: 54  KGRAVVLTTLSGDIEDAPRIISGIGELDRATG-GGFVRGSALLVGGDPGIGKSTLLTQAA 112

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A     G    +V  E A+  I  R   + + +  +          +I   +      D+
Sbjct: 113 AALASKGHRIVYVSGEEAVAQIRLRAQRLGVASSPVELAA-ETNVEDILATIADGKRPDL 171

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +++DS+  L            +     A+ M +  +   ++I     +         ++ 
Sbjct: 172 VILDSIQTLWTDLADSAPGTVTQVRAAAQAMIRYAKSTGAAIVLVGHVTKEGQIAGPRVV 231

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
                      G     Y  +R    R G 
Sbjct: 232 EHMVDAVLYFEGEGGHHYRILRTVKNRFGP 261


>gi|307300950|ref|ZP_07580719.1| DNA repair protein RadA [Sinorhizobium meliloti BL225C]
 gi|307321853|ref|ZP_07601239.1| DNA repair protein RadA [Sinorhizobium meliloti AK83]
 gi|306892522|gb|EFN23322.1| DNA repair protein RadA [Sinorhizobium meliloti AK83]
 gi|306903905|gb|EFN34491.1| DNA repair protein RadA [Sinorhizobium meliloti BL225C]
          Length = 467

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 76/213 (35%), Gaps = 8/213 (3%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG  + L +     E    + +G   LD   G GGF +G  + + G    GK+T+ +   
Sbjct: 52  KGRPVALTTLSGEIEDAPRIQTGISELDRVTG-GGFVRGSALLVGGDPGIGKSTVLMQAA 110

Query: 89  AQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           A   +      +V  E A+  +   A++LG    ++L++     E   +I   L      
Sbjct: 111 AALARRKHRVIYVSGEEAIAQVRLRAQRLGAADSDVLLAAETNVE---DILATLSEGKRP 167

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM- 205
           D+++IDS+  L            +      + M +   K T +       +    Q+   
Sbjct: 168 DLVIIDSIQTLWSDIVDSAPGTVTQVRTGVQAMIRFA-KQTGTAVVLVGHVTKEGQIAGP 226

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           ++            G+    Y  +R    R G 
Sbjct: 227 RVVEHMVDAVLYFEGDRGHHYRILRTVKNRFGP 259


>gi|76573426|gb|ABA46818.1| circadian clock protein KaiC [Microcystis aeruginosa PCC 7820]
 gi|159030653|emb|CAO88323.1| kaiC [Microcystis aeruginosa PCC 7806]
          Length = 520

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 72/219 (32%), Gaps = 33/219 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       +SSG   LD   G GGF K  I+   G   +GKT L    + +  
Sbjct: 253 MRLTQRSSNV----RISSGVKTLDDMCG-GGFFKDSIILATGATGTGKTLLVSKFLEEGC 307

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
           + G        E +   +        +            LL S P++   E  L++    
Sbjct: 308 RRGERAILFAYEESRAQLSRNASSWGIDFEEMERKGLLKLLCSYPESAGLEDHLQMIKSE 367

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 368 ISEFKPSRIAIDSLSALA-------------RGVTNNAFRQFVIGVTGYAKQEEITGFFT 414

Query: 201 N---QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           N   Q      +      T T    +  Y  +R ++ R 
Sbjct: 415 NTTDQFMGAHSITESHISTITDTILMLQYVEIRGEMSRA 453



 Score = 37.5 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
          +G+  + +   G D  +  GG P GR   + G   +GKT LA+  +  
Sbjct: 17 KGVRKIRTLIEGFDE-ITHGGLPMGRTTLVSGTSGTGKTLLAVQFLYH 63


>gi|15964879|ref|NP_385232.1| DNA repair protein RadA [Sinorhizobium meliloti 1021]
 gi|15074058|emb|CAC45705.1| Putative DNA repair protein [Sinorhizobium meliloti 1021]
          Length = 487

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 76/213 (35%), Gaps = 8/213 (3%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG  + L +     E    + +G   LD   G GGF +G  + + G    GK+T+ +   
Sbjct: 72  KGRPVALTTLSGEIEDAPRIQTGISELDRVTG-GGFVRGSALLVGGDPGIGKSTVLMQAA 130

Query: 89  AQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
           A   +      +V  E A+  +   A++LG    ++L++     E   +I   L      
Sbjct: 131 AALARRKHRVIYVSGEEAIAQVRLRAQRLGAADSDVLLAAETNVE---DILATLSEGKRP 187

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM- 205
           D+++IDS+  L            +      + M +   K T +       +    Q+   
Sbjct: 188 DLVIIDSIQTLWSDIVDSAPGTVTQVRTGVQAMIRFA-KQTGTAVVLVGHVTKEGQIAGP 246

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           ++            G+    Y  +R    R G 
Sbjct: 247 RVVEHMVDAVLYFEGDRGHHYRILRTVKNRFGP 279


>gi|194336299|ref|YP_002018093.1| DNA repair protein RadA [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308776|gb|ACF43476.1| DNA repair protein RadA [Pelodictyon phaeoclathratiforme BU-1]
          Length = 457

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 6/129 (4%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           A+M+     S+    + V +G   LD  LG GG  +G  V + G    GK+TL L    +
Sbjct: 54  AVME-NLHDSVPSEFQRVMTGIGELDRVLG-GGLMQGSAVLVGGEPGIGKSTLMLQLAPR 111

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
                      +         A++L +   NL +      E  L I    +      +++
Sbjct: 112 LAPAKVLYISGEESPNQIRERAQRLSIKAPNLWLIPEVNLESILAI----IAHEKPALVI 167

Query: 151 IDSVAALTP 159
           IDS+  +  
Sbjct: 168 IDSIQTVHS 176


>gi|229591710|ref|YP_002873829.1| putative kinase [Pseudomonas fluorescens SBW25]
 gi|229363576|emb|CAY50862.1| putative kinase [Pseudomonas fluorescens SBW25]
          Length = 486

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           +  +   ++ +  G   LD  LG GG P+G  + + GP  SGK+ LA   +A+  + G T
Sbjct: 238 ETPMTLPVQRLKMGVPRLDEMLG-GGLPRGYSLLVAGPSGSGKSILAATFLAEGARNGET 296

Query: 98  CAFVDAEH 105
                 E 
Sbjct: 297 GVIAVFEQ 304



 Score = 46.0 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 17/167 (10%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA- 103
           I  +++G  GLD  LG GG P+     I GP   GKTTLA   +           F    
Sbjct: 7   INRLATGVPGLDEVLG-GGLPEFSFNLIAGPPGCGKTTLAHQMMFALATPERPALFFTVL 65

Query: 104 -EHALDSIYARKLGVDLKNLLISQ------------PDTGEQALEITDMLVRSGAVDIIV 150
            E  L  +  ++      N  I+Q                ++ L      V + +  ++ 
Sbjct: 66  GEPPLKMLRYQQQFDFFDNEAINQSIRYINLADDTLAGDLDEVLRRIVSEVEAHSPSLVF 125

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQAR--LMSQALRKLTSSISRSKC 195
           +DS  ++   ++ + +   +LP    +  ++    +  T  I     
Sbjct: 126 VDSFRSVVLASQTQHNPNNNLPQFVQQLGMLMTTWQATTFLIGEYFT 172


>gi|323499377|ref|ZP_08104353.1| hypothetical protein VISI1226_21454 [Vibrio sinaloensis DSM 21326]
 gi|323315562|gb|EGA68597.1| hypothetical protein VISI1226_21454 [Vibrio sinaloensis DSM 21326]
          Length = 225

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
            L       E ++   +G   LD  L  GG PK  +VE+   +  G+  L L  +  +  
Sbjct: 13  WLWQGNQTPEALDHHPTGFPILDKKL-EGGLPKHGVVELQTAQGIGELRLLLPHLQNTSH 71

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
                 FV     L + +    G+D   +L+  P   ++AL   +  ++SGA   +++
Sbjct: 72  E-RLSVFVQPPGYLSAEHLVDQGIDPNKVLLIYPQNSKEALWSAEQCLKSGACSNVLL 128


>gi|54297071|ref|YP_123440.1| circadian clock protein KaiC [Legionella pneumophila str. Paris]
 gi|53750856|emb|CAH12267.1| hypothetical protein lpp1116 [Legionella pneumophila str. Paris]
          Length = 550

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 32/86 (37%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +S+G   LD  LG  G+  G  + I G   + KT  A      + + G    F+  E 
Sbjct: 241 EYLSTGIKALDRMLGNKGYQTGSQIIISGRSGTAKTLFAASFAQSAVRQGRKVLFISFEE 300

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGE 131
           + + +      +++  +         
Sbjct: 301 SPNDLIRHVKSINIDLMKYITKKKLH 326


>gi|229818203|ref|ZP_04448485.1| hypothetical protein BIFANG_03500 [Bifidobacterium angulatum DSM
           20098]
 gi|229784454|gb|EEP20568.1| hypothetical protein BIFANG_03500 [Bifidobacterium angulatum DSM
           20098]
          Length = 486

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 53/150 (35%), Gaps = 7/150 (4%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ----KTGG 96
             + +E V++G    D  LG GG   G +V I G    GK+TL L T            G
Sbjct: 86  ATDSVERVATGFQEFDRVLG-GGIVPGSVVLIAGEPGIGKSTLLLETAGNIARSYRNANG 144

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
           T  ++  E +   +  R   ++     +    T +  L     L+      + ++DS   
Sbjct: 145 TVLYISGEESQAQVRLRATRINAVEPNLLLAATTD--LATALGLIERYKPTLAIVDSAQT 202

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           +  +       G +     A  +    + L
Sbjct: 203 IISQDVDGISGGSTQVREVASALIDTAKTL 232


>gi|227894570|ref|ZP_04012375.1| DNA repair protein RadA [Lactobacillus ultunensis DSM 16047]
 gi|227863729|gb|EEJ71150.1| DNA repair protein RadA [Lactobacillus ultunensis DSM 16047]
          Length = 465

 Score = 46.0 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 66/183 (36%), Gaps = 7/183 (3%)

Query: 3   YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
           + KE   V K ++ +A  S++ +  G    ++L       E  + + + S  L+  LG G
Sbjct: 33  FEKETEEVQK-RSTKATASRLIKKTGINEPVKL--DKIKAEKEDRIPTKSEELNRVLG-G 88

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G   G +V I G    GK+TL L  ++   +          E A             ++ 
Sbjct: 89  GIVPGSLVLIGGDPGIGKSTLMLQIMSDLSEKYKVLYVSGEESANQIKLRADRLGVGQSN 148

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           ++  P+T    +      +     D +VIDS+  +   +        S        + + 
Sbjct: 149 MLLYPETDMHDIR---EQINDVKPDFVVIDSIQTMNEPSLDSMTGSASQVREVTSELMKI 205

Query: 183 LRK 185
            + 
Sbjct: 206 AKM 208


>gi|298493118|ref|YP_003723295.1| putative circadian clock protein KaiC ['Nostoc azollae' 0708]
 gi|298235036|gb|ADI66172.1| putative circadian clock protein, KaiC ['Nostoc azollae' 0708]
          Length = 514

 Score = 46.0 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 60/181 (33%), Gaps = 30/181 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG   LD   G GGF K  I+   G   +GKT L    I    
Sbjct: 251 MRLTQRSSNV----RVSSGVKTLDEMCG-GGFFKDSIILATGATGTGKTLLVSKFIQDGC 305

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
            +G        E +   +        +            ++ + P++   E  L+I    
Sbjct: 306 VSGERAILFAYEESRAQLSRNAYSWGIDFEELEHQGLLKIICTYPESTGLEDHLQIIKSE 365

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 366 IADFKPARIAIDSLSALA-------------RGVSNNAFRQFVIGVTGYAKQEEITGFFT 412

Query: 201 N 201
           N
Sbjct: 413 N 413



 Score = 39.8 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 12/152 (7%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ----SQ 92
            Q     G+E + +   G D  +  GG P GR   + G   +GKT L+L  +        
Sbjct: 9   QQNPPIGGVEKIRTMIEGFDD-ISHGGLPVGRTTLVSGTSGTGKTLLSLQFLYNGITYFD 67

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           + G    F ++   +    A   G +L+ L+       E  L I D        DI+   
Sbjct: 68  EPGVFVTFEESPSDIIKN-AHIFGWNLQKLIE------EGKLFILDASPDPEGQDIVGNF 120

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
            ++AL  R +      ++       + +   +
Sbjct: 121 DLSALIERLQYAIRKYKAHRVSIDSITAVFQQ 152


>gi|224127362|ref|XP_002320055.1| predicted protein [Populus trichocarpa]
 gi|222860828|gb|EEE98370.1| predicted protein [Populus trichocarpa]
          Length = 283

 Score = 46.0 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 70/222 (31%), Gaps = 45/222 (20%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            +++    LD  LG GG    ++ EI G    GKT L +      Q        GG   +
Sbjct: 24  RLTTSCADLDDILG-GGISCKQVTEIGGVPGIGKTQLGIQLAVNVQMPSFCGGLGGKAIY 82

Query: 101 VDAEHAL---------------DSIYARKLGVD-------------LKNLLISQPDTGEQ 132
           +D E +                 S Y R L  D             L+N+   +  +  +
Sbjct: 83  IDTEGSFMGERAQEIAEACVEDISEYKRFLHKDSQACQGEIQGKDVLQNIYFFRICSYTE 142

Query: 133 ALEITDM---LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
            + + +     +       IVI    A   R   E         ++ R++ +   KL   
Sbjct: 143 QIALINYLEEFISDHKDVKIVIIDSVAFHFRQGFED------LALRTRILGEMALKLVKL 196

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
                  +V +NQ+  +          + G +      + R+
Sbjct: 197 AKMCNLAVVLLNQVTTRYMEGSFQLSFSLG-DRWSRCCTNRI 237


>gi|114052709|ref|NP_001039769.1| DNA repair protein RAD51 homolog 4 [Bos taurus]
 gi|116255978|sp|Q2HJ51|RA51D_BOVIN RecName: Full=DNA repair protein RAD51 homolog 4; AltName:
           Full=R51H3; AltName: Full=RAD51-like protein 3
 gi|87578352|gb|AAI13310.1| RAD51-like 3 (S. cerevisiae) [Bos taurus]
 gi|296477021|gb|DAA19136.1| DNA repair protein RAD51 homolog 4 [Bos taurus]
          Length = 326

 Score = 46.0 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 65/209 (31%), Gaps = 21/209 (10%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL----HTIAQSQK- 93
             +     ++S+G   LD  L   G   G + EI G   SGKT + L    H     Q+ 
Sbjct: 73  EELKTSTAILSTGIGSLDKLL-DAGLYTGEVTEIVGAPGSGKTQVCLCVAAHVAHGLQQN 131

Query: 94  ------TGGTCA--FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
                  GG  A   +    A       + G  L+ + + +     Q L++   L  + +
Sbjct: 132 VLYIDSNGGLTASRILQLLQARTPDEEEQAGA-LQRIQVVRAFDIFQMLDVLQDLRGAVS 190

Query: 146 VDIIVIDSV---AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
             +           +   A +   +          LM Q  R+L +        ++  N 
Sbjct: 191 QQVSSSSGTLKVVVVDSVAAVVAPLLGGQQREGLALMMQLARELKTLARDLSVAVLVTNH 250

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRL 231
           M                G +  F  S RL
Sbjct: 251 MTRD---RDSGQLKPALGRSWSFVPSTRL 276


>gi|312220584|emb|CBY00525.1| predicted protein [Leptosphaeria maculans]
          Length = 296

 Score = 46.0 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 46/127 (36%), Gaps = 6/127 (4%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH-- 105
           + +G   LD AL  GG   GR V ++G E +G     L   +  +  G   A +D     
Sbjct: 46  IQTGVESLDRAL-DGGVEVGRAVGVWGDEGAGAICRMLLADSLLKHEGSMAAVIDTTGNF 104

Query: 106 ---ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
              AL  +   +L      L        +  L+ +   + +  +D + +  V       E
Sbjct: 105 DVLALYRVILARLQNSHATLSSLCSSLHDVQLDASAEDIATKLLDRVKMMRVFDFVGVKE 164

Query: 163 IEGDMGE 169
              ++ +
Sbjct: 165 AVDEIRD 171


>gi|212224038|ref|YP_002307274.1| ATPase [Thermococcus onnurineus NA1]
 gi|212008995|gb|ACJ16377.1| ATPase [Thermococcus onnurineus NA1]
          Length = 234

 Score = 46.0 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+G  GLD  L  GG   GR   + G   +GKTTL +  + +  K G    +V  E
Sbjct: 1   MERISTGIKGLDKML-EGGLIPGRTYLVKGGPGTGKTTLTIQFLTEGVKNGEDVLYVTLE 59

Query: 105 HALD 108
            +L 
Sbjct: 60  ESLK 63


>gi|313679913|ref|YP_004057652.1| DNA repair protein rada [Oceanithermus profundus DSM 14977]
 gi|313152628|gb|ADR36479.1| DNA repair protein RadA [Oceanithermus profundus DSM 14977]
          Length = 428

 Score = 46.0 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 58/146 (39%), Gaps = 8/146 (5%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +   SSGS  +D  LG G  P G  + I G    GK+TL L    +  K+G    +V 
Sbjct: 60  EALPRYSSGSEEVDRVLGGGFVP-GAALLIGGEPGVGKSTLLLQVADRVLKSGKRVVYVA 118

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E +   +  R   + +   L       +  L+     + + A D++V+DS+  L    E
Sbjct: 119 GEESPQQVKLRAERLGVSPRLELM---RDTRLDAVLAGLDAHAPDLVVVDSIQTL----E 171

Query: 163 IEGDMGESLPGMQARLMSQALRKLTS 188
            EG  G  +    A        K + 
Sbjct: 172 SEGVPGSLVAVRNATQALVRWAKASG 197


>gi|170030485|ref|XP_001843119.1| RAD51C protein [Culex quinquefasciatus]
 gi|167867360|gb|EDS30743.1| RAD51C protein [Culex quinquefasciatus]
          Length = 274

 Score = 46.0 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 8/112 (7%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           + +    LD A+G  G   G I E  GP  SGKT + L     +         GG   ++
Sbjct: 19  IITFCKDLDHAIGHPGVSVGLITEFCGPPGSGKTQI-LQLCVNANLPKELGGLGGKSLYL 77

Query: 102 DAEHALDSIYARKLGVD-LKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           D          R++    +++       +  Q  E+T        ++ ++ +
Sbjct: 78  DTNFGFSPDRLREIATACVQHCQRIVRTSRPQLAEVTSKFTAESVMESVLYN 129


>gi|220905790|ref|YP_002481101.1| circadian clock protein KaiC [Cyanothece sp. PCC 7425]
 gi|219862401|gb|ACL42740.1| putative circadian clock protein, KaiC [Cyanothece sp. PCC 7425]
          Length = 528

 Score = 46.0 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 74/207 (35%), Gaps = 25/207 (12%)

Query: 7   MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGS--IFEGIEVVSSGSLGLDIALGIGGF 64
           MN V+KS+         +   G+G     G  G   + + ++ + +   G D  +  GG 
Sbjct: 1   MNTVNKSR---------ENNPGEGN----GRDGDGFVRKEVQKIRTMIEGFDD-ISHGGL 46

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQ----SQKTGGTCAFVD-----AEHALDSIYARKL 115
           P+GR   + G   +GKT LA+  +        + G    F +     A +AL   +  + 
Sbjct: 47  PRGRTTLVSGTSGTGKTLLAMQFLYNGITLFDEPGVFVTFEESPADIARNALSFGWDLQK 106

Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
            +D   L I       +  E+      S  ++ I          R  I+           
Sbjct: 107 LIDEGKLFILDASPDPEGQEVAGDFDLSALIERIQYAIRKYKATRVSIDSVTAVFQQYDA 166

Query: 176 ARLMSQALRKLTSSISRSKCILVFINQ 202
           A ++ + + +L + + +     +   +
Sbjct: 167 ASVVRREIFRLAARLKQIGVTTIMTTE 193



 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 61/183 (33%), Gaps = 30/183 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG   LD   G GGF K  I+ + G   +GKT L    +  + 
Sbjct: 262 MRLTQRSSNV----RVSSGVKTLDEMCG-GGFFKDSIILVTGATGTGKTLLVSKFLENAC 316

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
             G        E +   +        +            ++ + P++   E  L+I    
Sbjct: 317 LNGERAILFAYEESRAQLSRNAYSWGIDLEDLEQRGLLKIICAYPESAGLEDHLQIIKSE 376

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 377 ISEFKPARISIDSLSALA-------------RGVSNNAFRQFVIGVTGFAKQEEITGFFT 423

Query: 201 NQM 203
           N  
Sbjct: 424 NTT 426


>gi|323349503|gb|EGA83727.1| Rad57p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 170

 Score = 46.0 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 56/170 (32%), Gaps = 23/170 (13%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALD 108
           +D  LG GG     I EI+G  S+GK+ L +      Q        GG C ++  E  L 
Sbjct: 1   MDELLG-GGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKCVYITTEGDLP 59

Query: 109 SIYA----------RKLGVDLKNLLISQPDTGEQALEITDMLVR-----SGAVDIIVIDS 153
           +              KLG+   N+     +       I ++ +      S     +VI  
Sbjct: 60  TQRLESMLSSRPAYEKLGITQSNIFTVSCNDLINQEHIINVQLPILLERSKGSIKLVIID 119

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             +   R E++              + +   KL          +V  NQ+
Sbjct: 120 SISHHLRVELQNKSFRES-QENKNYLDRMAEKLQILAHDYSLSVVVANQV 168


>gi|315640334|ref|ZP_07895451.1| DNA repair protein RadA [Enterococcus italicus DSM 15952]
 gi|315483996|gb|EFU74475.1| DNA repair protein RadA [Enterococcus italicus DSM 15952]
          Length = 456

 Score = 46.0 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 78/236 (33%), Gaps = 33/236 (13%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIE-VVSSGSLGLDIAL 59
           M   K  +  D+      A + I      G  M+      +    E  V +    L+  L
Sbjct: 34  MVEEKVQDTSDRR-----ARTTIT-----GQKMKPTRLADVVPKKEPRVQTDLAELNRVL 83

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YARKLGV 117
           G GG   G ++ + G    GK+TL L    Q   TGGT  +V  E + + I   A++LGV
Sbjct: 84  G-GGVVPGSLILLGGDPGIGKSTLLLQVSQQLAATGGTVLYVSGEESAEQIKLRAQRLGV 142

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
                 +                +   A   ++IDS+  +T           S       
Sbjct: 143 INDEFYLYAETDMSD----IRKAIEDLAPQYVIIDSIQTMTQPDITSVAGSVSQVRETTA 198

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
            + +        I+++  I +FI     K G +        G   L+      L  
Sbjct: 199 ELLK--------IAKTNGIAIFIVGHVTKEGSI-------AGPRMLEHMVDTVLYF 239


>gi|226291703|gb|EEH47131.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 505

 Score = 46.0 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 63/231 (27%), Gaps = 70/231 (30%)

Query: 46  EVVSSGSLGLDIALG--------------------------IGGFPKGRIVEIYGPESSG 79
             + +G   LD AL                             G  +G I E+ G    G
Sbjct: 45  SAIPTGLPRLDAALALRPGVRSSPLDPRRSNVYFQAHPAAPTKGVRRGEITEVMGSRGVG 104

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA--------------------------R 113
           KT  A+   A   + G    ++D    ++                              +
Sbjct: 105 KTAFAMRIAASVLEAGQKVVWIDTAGPMNPTRFKDILRRERNPKLPHNPSTAPSSSLREK 164

Query: 114 KLGVDLKNLLISQPDTGEQALEITDML---VRSGAVDIIVIDSVAALT--------PRAE 162
           K+   L  LL   P T    L +              +IVIDS+++L         PR  
Sbjct: 165 KMDEVLNQLLYFHPPTLAHLLALISHPPKGFPPQDTGLIVIDSISSLFTSEYCTKLPRER 224

Query: 163 IEGDMGESLPGMQARLMSQAL-------RKLTSSISRSKCILVFINQMRMK 206
                  +    + +               L    +R  C ++ IN+M  +
Sbjct: 225 KLNTTKTTRVTAETKEERTRWKIIGNLAMNLKKLAARLNCAVITINEMASR 275


>gi|225679931|gb|EEH18215.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
          Length = 505

 Score = 46.0 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 63/231 (27%), Gaps = 70/231 (30%)

Query: 46  EVVSSGSLGLDIALG--------------------------IGGFPKGRIVEIYGPESSG 79
             + +G   LD AL                             G  +G I E+ G    G
Sbjct: 45  SAIPTGLPRLDAALALRPGVRSSPLDPRRSNVYFQAHPAAPTKGVRRGEITEVMGSRGVG 104

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA--------------------------R 113
           KT  A+   A   + G    ++D    ++                              +
Sbjct: 105 KTAFAMRIAASVLEAGQKVVWIDTAGPMNPTRFKDILRMERNPKLPHNPSTAPSSSLRDK 164

Query: 114 KLGVDLKNLLISQPDTGEQALEITDML---VRSGAVDIIVIDSVAALT--------PRAE 162
           K+   L  LL   P T    L +              +IVIDS+++L         PR  
Sbjct: 165 KMDEVLNQLLYFHPPTLAHLLALISHPPKGFPPQDTGLIVIDSISSLFTSEYCTKLPRER 224

Query: 163 IEGDMGESLPGMQARLMSQAL-------RKLTSSISRSKCILVFINQMRMK 206
                  +    + +               L    +R  C ++ IN+M  +
Sbjct: 225 KLNTTKTTRVTAETKEERTRWKIIGNLAMNLKKLAARLNCAVITINEMASR 275


>gi|254173123|ref|ZP_04879796.1| RecA family AAA ATPase [Thermococcus sp. AM4]
 gi|214032532|gb|EEB73361.1| RecA family AAA ATPase [Thermococcus sp. AM4]
          Length = 235

 Score = 46.0 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 51/136 (37%), Gaps = 20/136 (14%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF----- 100
           + +S+G  GLD  +  GG   G++  I GP  SGKTT+ +H +    K     A+     
Sbjct: 5   DRISTGISGLDELI-EGGLIPGKVYLITGPPGSGKTTMGMHFLIDGAKRNEKVAYVSLVQ 63

Query: 101 -----------VDAEHALDSIYARKLGVDLKNLLI---SQPDTGEQALEITDMLVRSGAV 146
                       D    + +   R L  DL  +L    +   T    L     +     +
Sbjct: 64  DPNEAVKDMIRFDPSVQVYAGTKRLLLFDLGPVLWRESAHVPTWRSVLLRIREIAEDERI 123

Query: 147 DIIVIDSVAALTPRAE 162
             +VID + A+    E
Sbjct: 124 SRLVIDPLTAIEFSME 139


>gi|296162721|ref|ZP_06845506.1| Non-specific serine/threonine protein kinase [Burkholderia sp.
           Ch1-1]
 gi|295887037|gb|EFG66870.1| Non-specific serine/threonine protein kinase [Burkholderia sp.
           Ch1-1]
          Length = 491

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           G   LD  LG GGF +G    + GP   GKT L L  +A     G  C ++
Sbjct: 251 GLPHLDALLG-GGFARGSTTTLIGPSGVGKTLLCLQFLAAGIARGERCVYL 300


>gi|330957454|gb|EGH57714.1| putative kinase [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 495

 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 17/167 (10%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA- 103
           I  +++G  GLD  LG GG P+     I GP   GKTTLA   +           F    
Sbjct: 7   INRLATGVPGLDEVLG-GGLPEFSFNLIAGPPGCGKTTLAHQMMFALATPERPALFFTVL 65

Query: 104 -EHALDSIYARK----LGVD--------LKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            E  L  +  ++       D        +     +     ++ L      V + +  ++ 
Sbjct: 66  GEPPLKMLRYQQQFDFFDNDAINQSIRYVNLADDTLAGDLDEVLRRIVSEVETHSPALVF 125

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQAR--LMSQALRKLTSSISRSKC 195
           +DS  ++   ++   +   +LP    +  ++    +  T  I     
Sbjct: 126 VDSFRSVVLASQTRENPNNNLPQFVQQLGMLMTTWQATTFLIGEYFN 172



 Score = 42.5 bits (98), Expect = 0.088,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            ++ +  G   LD  LG GG P G  + + GP  SGK+ LA   +A+  + G T      
Sbjct: 244 PVKRLKMGVPRLDEMLG-GGLPHGYSLLVAGPSGSGKSILAASFLAEGARNGETGVIAVF 302

Query: 104 EH 105
           E 
Sbjct: 303 EQ 304


>gi|224102119|ref|XP_002312554.1| predicted protein [Populus trichocarpa]
 gi|222852374|gb|EEE89921.1| predicted protein [Populus trichocarpa]
          Length = 167

 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
            + +  +++GS  LD  LG GG     I E +G   SGKT LA      +QK
Sbjct: 102 RKSVIHITTGSQALDELLG-GGVETSAITEAFGEFRSGKTQLAHTLCVSTQK 152


>gi|110349631|gb|ABG73290.1| putative DMC1 protein [Leucocoprinus fragilissimus]
          Length = 87

 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 12/93 (12%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           EAA   +   +  G            + + ++S+GS  +D  LG GG     I E+YG  
Sbjct: 1   EAAHKILGSSFATGI-----EVQERRKKVHIISTGSKSVDAILG-GGLMSQSITEVYGEF 54

Query: 77  SSGKTTLALHTIAQSQ------KTGGTCAFVDA 103
            +GKT +A      +Q         G  A++D 
Sbjct: 55  RTGKTQMAHTMSVVAQLPPEFGGAAGKVAYIDT 87


>gi|67921500|ref|ZP_00515018.1| KaiC [Crocosphaera watsonii WH 8501]
 gi|67856612|gb|EAM51853.1| KaiC [Crocosphaera watsonii WH 8501]
          Length = 519

 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 71/219 (32%), Gaps = 33/219 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S        SSG   LD   G GGF K  I+   G   +GKT L    + +  
Sbjct: 253 MRLTQRSSNARS----SSGVKTLDQMCG-GGFFKDSIILATGATGTGKTLLVSKFLEEGC 307

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
           + G        E +   +        +            LL + P++   E  L+I    
Sbjct: 308 RQGERAILFAYEESRAQLSRNAFSWGIDFEEMEQKGLLKLLCTYPESAGLEDHLQIIKSE 367

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 368 ISEFKPSRIAIDSLSALA-------------RGVTNNAFRQFVIGVTGYAKQEEITGFFT 414

Query: 201 N---QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           N   Q      +      T T    +  Y  +R ++ R 
Sbjct: 415 NTTDQFMGAHSITESHISTITDTILMLQYVEIRGEMSRA 453



 Score = 40.2 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 6/92 (6%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ----SQK 93
           Q    +G+  + +   GLD  +  GG P GR     G   +GKT LA+  +         
Sbjct: 12  QQLTPKGVRKIRTMIEGLDE-ITHGGLPLGRTTLASGTSGTGKTLLAVQFLCHGIKYFDY 70

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
            G    F ++   +    A   G DL+ L+  
Sbjct: 71  PGLFVTFEESPRDII-ENAYSFGWDLQQLIDE 101


>gi|219112329|ref|XP_002177916.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217410801|gb|EEC50730.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 400

 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 24/119 (20%)

Query: 28  GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI---------------------GGFPK 66
           G  +++++  + +       +++GS  LD  L                        G P 
Sbjct: 127 GTISVLEMLQEKARESEFPTLTTGSFSLDRLLSFPKEYSVAPSAEMTLNHSSDPHSGIPF 186

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125
           G + +  GP   GK+ +AL   + +        +  + +     YA++L   +K+   S
Sbjct: 187 GYVTQFSGPPGCGKSQVALQVASSTAN---IKTWYLSSNPSLRSYAQRLSQLVKHYPQS 242


>gi|194476777|ref|YP_002048956.1| DNA repair protein RadA [Paulinella chromatophora]
 gi|171191784|gb|ACB42746.1| DNA repair protein RadA [Paulinella chromatophora]
          Length = 470

 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 78/222 (35%), Gaps = 12/222 (5%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +SSG    D  LG G  P G +V + G    GK+TL L +         +  +V AE
Sbjct: 71  VERLSSGYNEFDRVLGGGFVP-GSLVLVGGEPGIGKSTLLLQSA-MIMSRYSSILYVSAE 128

Query: 105 HALDSI--YARKLG--VDLKNLLISQPDTGEQ-----ALEITDMLVRSGAVDIIVIDSVA 155
            +   +    R+L    +L N       +         LEI    ++S    + VIDS+ 
Sbjct: 129 ESAQQVKLRWRRLNECKNLTNFHQENKTSQLHLMAETELEIILQELQSFRPAVAVIDSIQ 188

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
           A+            S     +  + +  ++  ++I     +         K+        
Sbjct: 189 AIYTSGLSSAPGSLSQVRECSLALQKLAKQQGTAILLVGHVTKEGTFAGPKVLEHLVDAV 248

Query: 216 TTTGGNALKFYSSVRLDIRRVGSIKD-KDSITGNQTRVKVVK 256
            T  G+       +R    R G+  +      GNQ  V++  
Sbjct: 249 ITFEGDRFGNNRLLRAIKNRFGANYELGVFEMGNQGLVELTN 290


>gi|170749374|ref|YP_001755634.1| circadian clock protein KaiC [Methylobacterium radiotolerans JCM
           2831]
 gi|170655896|gb|ACB24951.1| putative circadian clock protein, KaiC [Methylobacterium
           radiotolerans JCM 2831]
          Length = 562

 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           ++S+G  GLD  LG  GF +G  + I G   +GK+ LA   +  + + G  C     E +
Sbjct: 252 ILSTGIAGLDAMLGPRGFHRGSGILISGEAGTGKSMLAASILDAACRRGEHCLAFVFEES 311

Query: 107 LDSIYARKLGVDLK----------NLLISQPDTGEQALEITDML--VRSGAVDIIVIDSV 154
              I      + L               ++P        +  M   +     D++V+D +
Sbjct: 312 GAQIIRNARSIGLDLAAHVASGRLRFEAARPSLFGLETHLARMHRDLDQFRPDVVVLDPI 371

Query: 155 AALT-PRAEIEGDMGESLPGMQARLMSQALRKLTS--------SISRSKCILVFINQMRM 205
           +AL  P  E++  +   +  ++ R ++     L           +  S  +  +I    M
Sbjct: 372 SALRGPSGELQATLLRMIDLIKVRGITAIFTTLRGDDAPIEDNDLGVSSLMDAWIKLQNM 431

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
           +                +   + +R  +   G I+  D+  G
Sbjct: 432 EANGERTRTLYVIKARGMSHSNQIREFLMSSGGIQLVDAYIG 473



 Score = 41.4 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 82/257 (31%), Gaps = 17/257 (6%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-GGT 97
                 +  V++G  G D  L  GG P GR   I G    GKT  A   +       G  
Sbjct: 4   PQAAPTLPKVATGITGFDD-LTYGGLPTGRPTLICGAAGCGKTLFATTFLVNGATLYGEP 62

Query: 98  CAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI------- 148
             F+  E   + + A    LG DL  L+ +     +        +  +G  D+       
Sbjct: 63  GVFMSFEERAEDLAANVASLGYDLDGLVAAGHLAIDHVRVERSEIEETGEYDLEGLFIRL 122

Query: 149 -IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
              +DS+ A     +    +  S       L+   LR+L   I       +   +     
Sbjct: 123 GFAVDSIGAKRVVLDTIETLFAS--FTDPALLRAELRRLFGWIKDRGLTAIITGERGDGP 180

Query: 208 GVMFGSPETTT-GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS--PFK 264
               G  E  +     L      ++  RR+  +K + S  G      ++ +   S  P  
Sbjct: 181 LTRQGLEEYVSDCVVLLDNRVEDQVTTRRLRVVKYRGSAHGTNEYPFLIDHAGISVLPVT 240

Query: 265 QVEFDIMYGEGISFFGE 281
             + D    +GI   G 
Sbjct: 241 SADLDYAVPDGILSTGI 257


>gi|330900712|gb|EGH32131.1| KaiC [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 493

 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC--AFVDAEH 105
           +SSG   LD  LG GG   G    I GP  +GK+ ++L   AQ+   G        D E 
Sbjct: 209 LSSGIKELDDLLG-GGIEGGSSTLILGPAGTGKSLISLVFAAQAVARGERVGLFIFDEEM 267

Query: 106 ALDSIYARKLGVDLKNL 122
            L      KLG+DL+ L
Sbjct: 268 GLLFERMLKLGIDLRAL 284


>gi|226286929|gb|EEH42442.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 592

 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 70/212 (33%), Gaps = 29/212 (13%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ----- 92
           QG  F  +  +S+    LD AL  GG   G I E  G   SGKT   LH +   Q     
Sbjct: 100 QGHKFPELSFISTLDPVLDAALA-GGISTGYITEFAGESGSGKTQFLLHLLLSVQLPPPY 158

Query: 93  ---------------KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP---DTGEQAL 134
                           TG     +D    L ++        L+N+L       +T +  L
Sbjct: 159 GTSRKALYFSTESDLPTGRLSQLLDEHPLLSTLPEASARPSLENILSITTIDLETQDHIL 218

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
                +  S     +V+        RAE            +A  + +  R L +  ++  
Sbjct: 219 NYQIPVAVSRYNIGLVVIDSITANYRAE-SDSDNVPGLLARAWQLKKLGRFLRNLAAKEN 277

Query: 195 CILVFINQMRMKIGVMF----GSPETTTGGNA 222
             +V  NQ+  +I +        PE  TG   
Sbjct: 278 IAIVVANQVSDQIQMDDVIWADEPEPPTGCYM 309


>gi|73964234|ref|XP_547868.2| PREDICTED: similar to RAD51-like 1 isoform 1 [Canis familiaris]
          Length = 345

 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 56/168 (33%), Gaps = 27/168 (16%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCAFVDAEHAL 107
            LD AL  GG   G + EI GP   GKT   +                G   ++D E A 
Sbjct: 89  ALDEAL-HGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGDVVYIDTESAF 147

Query: 108 DSIYARKL------------------GVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
            +    ++                     +        D   Q +E  +  + S  V ++
Sbjct: 148 SAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELSCDAVLQRIESLEEEIISKGVKLV 207

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
           +IDSVA++  R E +  +  +    + + +++    L          +
Sbjct: 208 IIDSVASVV-RKEFDTQLQGN-MRERNKFLAREAASLKYLAEEFSIPV 253


>gi|126175419|ref|YP_001051568.1| DNA repair protein RadA [Shewanella baltica OS155]
 gi|125998624|gb|ABN62699.1| DNA repair protein RadA [Shewanella baltica OS155]
          Length = 454

 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 8/146 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
              +  + S    LD  LG GG   G  + I G   +GK+TL L T+    +      +V
Sbjct: 68  LNAMPRILSHFGELDRVLG-GGIVPGSAILIGGHPGAGKSTLLLQTLCHLAEQ-MPALYV 125

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+    L +    + EQ  E+    +      +IV+DS+  +  
Sbjct: 126 TGEESLQQVAMRAHRLGLPTNKLRMLSETSVEQICEVALKELPK----VIVVDSIQVMHM 181

Query: 160 RAEIEGDMGESLPGMQARLMSQALRK 185
                     S     A  +++  ++
Sbjct: 182 SDVASSPGSVSQVRESASYLTRFAKE 207


>gi|292656491|ref|YP_003536388.1| KaiC-type circadian regulator Circ2 [Haloferax volcanii DS2]
 gi|251829613|gb|ACT21185.1| Circ2 [Haloferax volcanii]
 gi|291371196|gb|ADE03423.1| KaiC-type circadian regulator Circ2 [Haloferax volcanii DS2]
          Length = 274

 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 1/84 (1%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
                   I+ +  G  GLD  + +GG PK  ++   G   +GKTT  L  + ++ + GG
Sbjct: 36  DDEEFDSDIDRIDIGIEGLDDMI-LGGVPKRSLMVAIGSAGTGKTTFGLQFLRKALEDGG 94

Query: 97  TCAFVDAEHALDSIYARKLGVDLK 120
           +  ++  E + + I         +
Sbjct: 95  SGVYITLEESRERILDTADEKGWE 118


>gi|242209313|ref|XP_002470504.1| predicted protein [Postia placenta Mad-698-R]
 gi|220730414|gb|EED84271.1| predicted protein [Postia placenta Mad-698-R]
          Length = 247

 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI--AQSQKTGGTCAFVDAEH 105
           +S+G   LD  L   G    R++E+ G   SGKT+LAL  +    S     +  ++D   
Sbjct: 89  LSTGVPELDTLL--DGMHPPRVIEVSGDRGSGKTSLALQVVLRHLSTVFDSSALWIDTTG 146

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
                    +   L++       T  + L++        A +++
Sbjct: 147 DFAPERIPAM---LEHYTGQAASTVLERLQVALAFDIEAAHEVL 187


>gi|147918711|ref|YP_687566.1| KaiC family ATPase [uncultured methanogenic archaeon RC-I]
 gi|110622962|emb|CAJ38240.1| putative ATPase (KaiC family) [uncultured methanogenic archaeon
           RC-I]
          Length = 254

 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E V +G  GLDI L  GGF KG  + I G   SGKT LAL       + G    +V   
Sbjct: 10  LEQVKTGVDGLDILLS-GGFVKGSTILISGSYGSGKTLLALQYAFYQAQRGDKVLYVSTS 68

Query: 105 HALDSIYA 112
             +  I  
Sbjct: 69  EPVFKIRQ 76


>gi|254804660|ref|YP_003082881.1| DNA repair protein [Neisseria meningitidis alpha14]
 gi|254668202|emb|CBA04946.1| DNA repair protein [Neisseria meningitidis alpha14]
 gi|325203868|gb|ADY99321.1| DNA repair protein RadA [Neisseria meningitidis M01-240355]
          Length = 459

 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 55/146 (37%), Gaps = 4/146 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
               +    +G   LD  LG GG   G ++ + G    GK+TL L TI +  ++     +
Sbjct: 65  TATEVPRNPTGMGELDRVLG-GGLVDGAVILLGGDPGIGKSTLLLQTITKMAQS-RKVLY 122

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E +   +  R     L+          E  +E     ++    +++VIDS+  +   
Sbjct: 123 VSGEESAQQVALRAQ--RLELPTEGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQTMYSD 180

Query: 161 AEIEGDMGESLPGMQARLMSQALRKL 186
                    S     A  +++  +++
Sbjct: 181 QITSAPGSVSQVRECAAQLTRMAKQM 206


>gi|254527018|ref|ZP_05139070.1| DNA repair protein RadA [Prochlorococcus marinus str. MIT 9202]
 gi|221538442|gb|EEE40895.1| DNA repair protein RadA [Prochlorococcus marinus str. MIT 9202]
          Length = 453

 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 83/230 (36%), Gaps = 31/230 (13%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + I   +SG   +D  LG GG   G +V + G    GK+T+ L +  +         +V 
Sbjct: 65  KKISRFTSGFKEIDRVLG-GGIVPGSVVLLGGEPGIGKSTIVLQSAGKI-SLNEKVLYVT 122

Query: 103 AEHALDS--IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           AE +L+   I   +L  +   L I         L +    ++S      +IDS+ A+   
Sbjct: 123 AEESLEQVKIRWERLNQNSNELKIFAETN----LTLIMEEIKSVNPSFAIIDSIQAIHNH 178

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
                    S     +  +         +++++  I + I     K G +        G 
Sbjct: 179 EMESSPGSVSQVRACSSELQ--------NLAKNNNIALLIIGHVTKDGAL-------AGP 223

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
             L+    V ++         +     +   ++ +KN+  S F+   F++
Sbjct: 224 KTLEHLVDVVINF--------EGDKVSSHRLLRSIKNRFGSTFEIGIFEM 265


>gi|316983771|gb|EFV62752.1| DNA repair protein RadA [Neisseria meningitidis H44/76]
 gi|325140064|gb|EGC62593.1| DNA repair protein RadA [Neisseria meningitidis CU385]
          Length = 473

 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 4/146 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
               +    +G   LD  LG GG   G ++ + G    GK+TL L TIA+  ++     +
Sbjct: 79  TATEVPRNPTGMGELDRVLG-GGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQS-RKVLY 136

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E +   +  R     L+          E  +E     ++    +++VIDS+  +   
Sbjct: 137 VSGEESAQQVALRAQ--RLELPTDGVNLLAEIRMEAIQAALKQHQPEVVVIDSIQTMYSD 194

Query: 161 AEIEGDMGESLPGMQARLMSQALRKL 186
                    S     A  +++  +++
Sbjct: 195 QITSAPGSVSQVRECAAQLTRMAKQM 220


>gi|154335738|ref|XP_001564105.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134061139|emb|CAM38161.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 571

 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 65/200 (32%), Gaps = 29/200 (14%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS------QKTGGTCAF 100
            + +G   LD+AL +GG  +G + E+ G   +GKTTLA                   C +
Sbjct: 197 SIPTGLRSLDVAL-LGGLRRGWVTELTGLPGTGKTTLAAAWCRCCLRHTRLCGVAHDCVW 255

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG---------------- 144
           + +  A++         +     +           ++++                     
Sbjct: 256 LQSGSAVEPSVLSIAHEETNATELPSLAAAVHITSLSNLEDLQQLLYRWQGTSASTSPLS 315

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            V +IV+DS+  L  R+       +     +   ++  LR L          ++ I + R
Sbjct: 316 TVGLIVLDSITELVQRSFCYR---DDDALERYEALATILRSLKRLAEEQHVAILVITKQR 372

Query: 205 MKIGVMFGSP---ETTTGGN 221
                 F  P    T+ G  
Sbjct: 373 CPPSPTFRRPGISHTSCGAY 392


>gi|119495453|ref|XP_001264511.1| DNA repair protein (Rad57), putative [Neosartorya fischeri NRRL
           181]
 gi|119412673|gb|EAW22614.1| DNA repair protein (Rad57), putative [Neosartorya fischeri NRRL
           181]
          Length = 777

 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 65/188 (34%), Gaps = 30/188 (15%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-----KTGGTCAF 100
             +S+    LD  L  GG P G + E+ G   SGKT   L  +   Q       G    +
Sbjct: 310 SAISTLDPALDELLN-GGLPTGYLTEVTGESGSGKTQFLLSLLLAVQLPEPRGLGKGAIY 368

Query: 101 VDAEHALDSIYARKL---GVDLKNLLISQPDTGEQALEITDMLVRSGAVD---------- 147
           +  E  L +    +L      L  L   +  T E  L I  M + S              
Sbjct: 369 ISTEAPLATSRLSQLLEYHPYLSTLPKDRAPTLENILSINAMDLESQDHILNYQLPVAIT 428

Query: 148 -----IIVIDSVAALTPRAEIEGD--MGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
                ++VIDS+ +   RAE      +G S    +   + Q    L +     K  +V  
Sbjct: 429 RYDVGLVVIDSITS-NYRAEHTSHNVLGLSTRSRELARLGQM---LRNLAVAKKIAIVVA 484

Query: 201 NQMRMKIG 208
           NQ+  +  
Sbjct: 485 NQVSDRFD 492


>gi|330982190|gb|EGH80293.1| KaiC [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 469

 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC--AFVDAEH 105
           +SSG   LD  LG GG   G    I GP  +GK+ ++L   AQ+   G        D E 
Sbjct: 223 LSSGIKELDDLLG-GGIEGGSSTLILGPAGTGKSLISLVFAAQAVARGERVGLFIFDEEM 281

Query: 106 ALDSIYARKLGVDLKNL 122
            L      KLG+DL+ L
Sbjct: 282 GLLFERMLKLGIDLRAL 298


>gi|325958895|ref|YP_004290361.1| putative circadian clock protein, KaiC [Methanobacterium sp. AL-21]
 gi|325330327|gb|ADZ09389.1| putative circadian clock protein, KaiC [Methanobacterium sp. AL-21]
          Length = 229

 Score = 45.6 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++ V SG  G+D     GGFP+GR + + G   SGKT   L     S   G    ++  E
Sbjct: 1   MKRVKSGIEGIDNI--TGGFPQGRSMLVTGDAGSGKTIFGLQFAKSSCAQGFKTTYITTE 58

Query: 105 HALDSIYARKLGVDLKN 121
                +Y +    +   
Sbjct: 59  EDAKDLYTQGESFNWDM 75


>gi|302187743|ref|ZP_07264416.1| KaiC [Pseudomonas syringae pv. syringae 642]
          Length = 469

 Score = 45.6 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC--AFVDAEH 105
           +SSG   LD  LG GG   G    I GP  +GK+ ++L   AQ+   G        D E 
Sbjct: 223 LSSGIKELDDLLG-GGIEGGSSTLILGPAGTGKSLISLVFAAQAVARGERVGLFIFDEEM 281

Query: 106 ALDSIYARKLGVDLKNL 122
            L      KLG+DL+ L
Sbjct: 282 GLLFERMLKLGIDLRAL 298


>gi|254669886|emb|CBA04378.1| DNA repair protein [Neisseria meningitidis alpha153]
          Length = 459

 Score = 45.6 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 4/146 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
               +    +G   LD  LG GG   G ++ + G    GK+TL L TIA+  ++     +
Sbjct: 65  TATEVPRNPTGMGELDRVLG-GGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQS-RKVLY 122

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E +   +  R     L+          E  +E     ++    +++VIDS+  +   
Sbjct: 123 VSGEESAQQVALRAQ--RLELPTDGVNLLAEIRMEAIQAALKQHQPEVVVIDSIQTMYSD 180

Query: 161 AEIEGDMGESLPGMQARLMSQALRKL 186
                    S     A  +++  +++
Sbjct: 181 QITSAPGSVSQVRECAAQLTRMAKQM 206


>gi|240013682|ref|ZP_04720595.1| DNA repair protein RadA [Neisseria gonorrhoeae DGI18]
 gi|240016122|ref|ZP_04722662.1| DNA repair protein RadA [Neisseria gonorrhoeae FA6140]
 gi|240080263|ref|ZP_04724806.1| DNA repair protein RadA [Neisseria gonorrhoeae FA19]
 gi|240112475|ref|ZP_04726965.1| DNA repair protein RadA [Neisseria gonorrhoeae MS11]
 gi|240115215|ref|ZP_04729277.1| DNA repair protein RadA [Neisseria gonorrhoeae PID18]
 gi|240117502|ref|ZP_04731564.1| DNA repair protein RadA [Neisseria gonorrhoeae PID1]
 gi|240120751|ref|ZP_04733713.1| DNA repair protein RadA [Neisseria gonorrhoeae PID24-1]
 gi|240123056|ref|ZP_04736012.1| DNA repair protein RadA [Neisseria gonorrhoeae PID332]
 gi|240125309|ref|ZP_04738195.1| DNA repair protein RadA [Neisseria gonorrhoeae SK-92-679]
 gi|240127760|ref|ZP_04740421.1| DNA repair protein RadA [Neisseria gonorrhoeae SK-93-1035]
 gi|254493278|ref|ZP_05106449.1| DNA repair protein RadA [Neisseria gonorrhoeae 1291]
 gi|260440966|ref|ZP_05794782.1| DNA repair protein RadA [Neisseria gonorrhoeae DGI2]
 gi|268596413|ref|ZP_06130580.1| DNA repair protein RadA [Neisseria gonorrhoeae FA19]
 gi|268598544|ref|ZP_06132711.1| DNA repair protein RadA [Neisseria gonorrhoeae MS11]
 gi|268600896|ref|ZP_06135063.1| DNA repair protein RadA [Neisseria gonorrhoeae PID18]
 gi|268603202|ref|ZP_06137369.1| DNA repair protein RadA [Neisseria gonorrhoeae PID1]
 gi|268681683|ref|ZP_06148545.1| DNA repair protein RadA [Neisseria gonorrhoeae PID332]
 gi|268683910|ref|ZP_06150772.1| DNA repair protein RadA [Neisseria gonorrhoeae SK-92-679]
 gi|268686153|ref|ZP_06153015.1| DNA repair protein RadA [Neisseria gonorrhoeae SK-93-1035]
 gi|291044294|ref|ZP_06570003.1| DNA repair and recombination protein radA [Neisseria gonorrhoeae
           DGI2]
 gi|226512318|gb|EEH61663.1| DNA repair protein RadA [Neisseria gonorrhoeae 1291]
 gi|268550201|gb|EEZ45220.1| DNA repair protein RadA [Neisseria gonorrhoeae FA19]
 gi|268582675|gb|EEZ47351.1| DNA repair protein RadA [Neisseria gonorrhoeae MS11]
 gi|268585027|gb|EEZ49703.1| DNA repair protein RadA [Neisseria gonorrhoeae PID18]
 gi|268587333|gb|EEZ52009.1| DNA repair protein RadA [Neisseria gonorrhoeae PID1]
 gi|268621967|gb|EEZ54367.1| DNA repair protein RadA [Neisseria gonorrhoeae PID332]
 gi|268624194|gb|EEZ56594.1| DNA repair protein RadA [Neisseria gonorrhoeae SK-92-679]
 gi|268626437|gb|EEZ58837.1| DNA repair protein RadA [Neisseria gonorrhoeae SK-93-1035]
 gi|291011188|gb|EFE03184.1| DNA repair and recombination protein radA [Neisseria gonorrhoeae
           DGI2]
          Length = 459

 Score = 45.6 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 56/143 (39%), Gaps = 4/143 (2%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +    +G   LD  LG GG   G ++ + G    GK+TL L TIA+  ++     +V  
Sbjct: 68  EVPRNPTGMGELDRVLG-GGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQS-RKVLYVSG 125

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E +   +  R     L+          E  +E     ++    +++VIDS+  +      
Sbjct: 126 EESAQQVALR--SQRLELHAEGVNLLAEIRMEAIQAALKQHQPEVVVIDSIQTMYSDQIT 183

Query: 164 EGDMGESLPGMQARLMSQALRKL 186
                 S     A  +++  +++
Sbjct: 184 SAPGSVSQVRECAAQLTRMAKQM 206


>gi|59800811|ref|YP_207523.1| DNA repair protein RadA [Neisseria gonorrhoeae FA 1090]
 gi|194098100|ref|YP_002001148.1| DNA repair protein RadA [Neisseria gonorrhoeae NCCP11945]
 gi|239998557|ref|ZP_04718481.1| DNA repair protein RadA [Neisseria gonorrhoeae 35/02]
 gi|268594416|ref|ZP_06128583.1| DNA repair protein RadA [Neisseria gonorrhoeae 35/02]
 gi|293399485|ref|ZP_06643638.1| DNA repair protein RadA [Neisseria gonorrhoeae F62]
 gi|59717706|gb|AAW89111.1| putative DNA repair protein [Neisseria gonorrhoeae FA 1090]
 gi|193933390|gb|ACF29214.1| RadA [Neisseria gonorrhoeae NCCP11945]
 gi|268547805|gb|EEZ43223.1| DNA repair protein RadA [Neisseria gonorrhoeae 35/02]
 gi|291610054|gb|EFF39176.1| DNA repair protein RadA [Neisseria gonorrhoeae F62]
 gi|317163832|gb|ADV07373.1| DNA repair protein RadA [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 459

 Score = 45.6 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 56/143 (39%), Gaps = 4/143 (2%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +    +G   LD  LG GG   G ++ + G    GK+TL L TIA+  ++     +V  
Sbjct: 68  EVPRNPTGMGELDRVLG-GGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQS-RKVLYVSG 125

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E +   +  R     L+          E  +E     ++    +++VIDS+  +      
Sbjct: 126 EESAQQVALR--SQRLELHAEGVNLLAEIRMEAIQAALKQHQPEVVVIDSIQTMYSDQIT 183

Query: 164 EGDMGESLPGMQARLMSQALRKL 186
                 S     A  +++  +++
Sbjct: 184 SAPGSVSQVRECAAQLTRMAKQM 206


>gi|15676680|ref|NP_273824.1| DNA repair protein RadA [Neisseria meningitidis MC58]
 gi|7226014|gb|AAF41195.1| DNA repair protein RadA [Neisseria meningitidis MC58]
 gi|325200532|gb|ADY95987.1| DNA repair protein RadA [Neisseria meningitidis H44/76]
          Length = 459

 Score = 45.6 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 4/146 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
               +    +G   LD  LG GG   G ++ + G    GK+TL L TIA+  ++     +
Sbjct: 65  TATEVPRNPTGMGELDRVLG-GGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQS-RKVLY 122

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E +   +  R     L+          E  +E     ++    +++VIDS+  +   
Sbjct: 123 VSGEESAQQVALRAQ--RLELPTDGVNLLAEIRMEAIQAALKQHQPEVVVIDSIQTMYSD 180

Query: 161 AEIEGDMGESLPGMQARLMSQALRKL 186
                    S     A  +++  +++
Sbjct: 181 QITSAPGSVSQVRECAAQLTRMAKQM 206


>gi|332185117|ref|ZP_08386866.1| DNA repair protein RadA [Sphingomonas sp. S17]
 gi|332014841|gb|EGI56897.1| DNA repair protein RadA [Sphingomonas sp. S17]
          Length = 457

 Score = 45.6 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 73/217 (33%), Gaps = 7/217 (3%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           AI  +G    I    + +++G   LD ALG GGF +G    I G    GK+TL L   A+
Sbjct: 56  AIQLVGLDADIPLP-DRMATGIAELDRALG-GGFVEGSATLIGGDPGIGKSTLLLQAAAK 113

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
               G   A+V  E A D +  R   + L    +          +I   L       +++
Sbjct: 114 LAMAGKPVAYVSGEEAADQVRLRARRLGLGQAPVRLAAATS-VRDILTTLSIGTPPALLI 172

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           IDS+  +            S      + + +  ++  +++     +    +    ++   
Sbjct: 173 IDSIQTMHSDLIEGAPGTVSQVRASGQELIRFAKERGTAVVLVGHVTKDGSIAGPRVLEH 232

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247
                    G     Y  +R    R G         G
Sbjct: 233 MVDTVLAFEGERSHQYRILRAIKNRFG----GTDEIG 265


>gi|326328755|ref|ZP_08195091.1| DNA repair protein RadA [Nocardioidaceae bacterium Broad-1]
 gi|325953377|gb|EGD45381.1| DNA repair protein RadA [Nocardioidaceae bacterium Broad-1]
          Length = 461

 Score = 45.6 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 49/134 (36%), Gaps = 3/134 (2%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E  +SG   LD  LG GG   G  + + G    GK+TL L   AQ+ + G    +V  E 
Sbjct: 68  ERRTSGVPELDRVLG-GGLVPGAAILLAGEPGVGKSTLLLEVAAQTARYGRRALYVTGEE 126

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +   +  R    +   +        E  L      +     D+IV+DSV  +        
Sbjct: 127 SASQVRLRADRTN--AIQDELYLAAETDLGAVLTHIEETRPDLIVVDSVQTIGASGVEGV 184

Query: 166 DMGESLPGMQARLM 179
             G +     A  +
Sbjct: 185 PGGVTQVREVAAAL 198


>gi|219853244|ref|YP_002467676.1| circadian clock protein, KaiC [Methanosphaerula palustris E1-9c]
 gi|219547503|gb|ACL17953.1| putative circadian clock protein, KaiC [Methanosphaerula palustris
           E1-9c]
          Length = 234

 Score = 45.6 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 3/80 (3%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E V  G  GLD  L  GG   G    I G   +GKTT AL  I +    G T  ++  E 
Sbjct: 6   ERVRMGIDGLDEMLS-GGLIPGSFAAIVGTYGTGKTTFALQFIWEGLIRGETAIYITLEE 64

Query: 106 ALDSI--YARKLGVDLKNLL 123
           + +SI  Y +    D+    
Sbjct: 65  SEESIVRYMQVKSWDIDQYR 84


>gi|291533973|emb|CBL07086.1| DNA repair protein RadA [Megamonas hypermegale ART12/1]
          Length = 457

 Score = 45.6 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 61/172 (35%), Gaps = 12/172 (6%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           +    E +   S+GS+ ++  LG GG   G +V + G    GK++L L   A    T   
Sbjct: 63  KEIATEDLPRFSAGSVEMNRVLG-GGIIPGSLVLMVGDPGVGKSSLNLRICANVATTHKV 121

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
                 E A            L++ L    +T  + +E     V     D+++IDS+  +
Sbjct: 122 LYVTGEESARQIRMRADRLNALQDNLFVLSETDLERIE---RHVLETKPDLLIIDSIQTI 178

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
                       S     +  + +        I++   I +FI     K G 
Sbjct: 179 FRPDVQSAPGSVSQVRECSVSLLR--------IAKQNNISIFIIGHVTKDGT 222


>gi|159131375|gb|EDP56488.1| DNA repair protein (Rad57), putative [Aspergillus fumigatus A1163]
          Length = 647

 Score = 45.6 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 65/188 (34%), Gaps = 30/188 (15%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-----KTGGTCAF 100
             +S+    LD  L  GG P G + E+ G   SGKT   L  +   Q       G    +
Sbjct: 180 SAISTLDPALDELLN-GGLPTGYLTEVTGESGSGKTQFLLSLLLAVQLPEPRGLGKGAIY 238

Query: 101 VDAEHALDSIYARKL---GVDLKNLLISQPDTGEQALEITDMLVRSGAVD---------- 147
           +  E  L +    +L      L +L   +  T +  L I  M + S              
Sbjct: 239 ISTEAPLATSRLSQLLEYHPYLSDLPKDRAPTLDNILSINAMDLESQDHILNYQLPVAIT 298

Query: 148 -----IIVIDSVAALTPRAEIEGD--MGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
                ++VIDS+ +   RAE      +G S    +   + Q    L +        +V  
Sbjct: 299 RYDVGLVVIDSITS-NYRAEHTSHNVLGLSTRSGELARLGQM---LRNLAVAKNIAIVVA 354

Query: 201 NQMRMKIG 208
           NQ+  +  
Sbjct: 355 NQVSDRFD 362


>gi|325206376|gb|ADZ01829.1| DNA repair protein RadA [Neisseria meningitidis M04-240196]
          Length = 473

 Score = 45.6 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 4/146 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
               +    +G   LD  LG GG   G ++ + G    GK+TL L TIA+  ++     +
Sbjct: 79  TATEVPRNPTGMGELDRVLG-GGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQS-RKVLY 136

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E +   +  R     L+          E  +E     ++    +++VIDS+  +   
Sbjct: 137 VSGEESAQQVALRAQ--RLELPTEGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQTMYSD 194

Query: 161 AEIEGDMGESLPGMQARLMSQALRKL 186
                    S     A  +++  +++
Sbjct: 195 QITSAPGSVSQVRECAAQLTRMAKQM 220


>gi|218248663|ref|YP_002374034.1| circadian clock protein KaiC [Cyanothece sp. PCC 8801]
 gi|257061733|ref|YP_003139621.1| circadian clock protein KaiC [Cyanothece sp. PCC 8802]
 gi|218169141|gb|ACK67878.1| putative circadian clock protein, KaiC [Cyanothece sp. PCC 8801]
 gi|256591899|gb|ACV02786.1| putative circadian clock protein, KaiC [Cyanothece sp. PCC 8802]
          Length = 507

 Score = 45.6 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 3/87 (3%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           +    E IE + +   G D  L +GG PKGR   + G   S KT  A   +A+  K G  
Sbjct: 6   EQDYTESIEKLETAIPGFDF-LSVGGLPKGRATLVAGTAGSSKTVFACQFLAEGIKRGEN 64

Query: 98  CAFVDAEHA--LDSIYARKLGVDLKNL 122
             FV  E          R  G ++   
Sbjct: 65  GVFVTFEEPPKALRKNMRGFGWNIAQW 91



 Score = 43.7 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 54/131 (41%), Gaps = 13/131 (9%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            ++SGS  LD   G GGF +  I+ + G   +GKT +    +A        C     E +
Sbjct: 258 RITSGSDELDRMCG-GGFFRDSIILVSGATGTGKTLMVTEFMAGGVLNNERCLVFAFEES 316

Query: 107 LDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDMLVRSGAVDIIVIDSV 154
            + ++    G  +            ++   P+T   E  L +   ++     + + +DS+
Sbjct: 317 REQLFRNATGWGVDFEKMELEGKLKVVCRYPETAGLENHLIMMKEIIEEFKPNRVAVDSL 376

Query: 155 AALTPRAEIEG 165
           +AL   + ++G
Sbjct: 377 SALERVSSLKG 387


>gi|56697516|ref|YP_167884.1| DNA repair protein RadA [Ruegeria pomeroyi DSS-3]
 gi|56679253|gb|AAV95919.1| DNA repair protein RadA [Ruegeria pomeroyi DSS-3]
          Length = 453

 Score = 45.6 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 3/136 (2%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SG   LD  LG G  P   I+ + G    GK+TL L  +A   + G    +V  E A   
Sbjct: 71  SGIGELDRVLGGGLVPASAIL-VGGDPGIGKSTLLLQAVAAFARKGLKTLYVSGEEASAQ 129

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +  R   + L +  +         L      + +    +++IDS+  +            
Sbjct: 130 VRMRARRLGLADAPVQLAAETN--LRDILTTLEAEKPGLVIIDSIQTMWADNVDSAPGSV 187

Query: 170 SLPGMQARLMSQALRK 185
           S     A  ++   ++
Sbjct: 188 SQVRASAHELTTFAKR 203


>gi|70995734|ref|XP_752622.1| DNA repair protein (Rad57) [Aspergillus fumigatus Af293]
 gi|66850257|gb|EAL90584.1| DNA repair protein (Rad57), putative [Aspergillus fumigatus Af293]
          Length = 647

 Score = 45.6 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 65/188 (34%), Gaps = 30/188 (15%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-----KTGGTCAF 100
             +S+    LD  L  GG P G + E+ G   SGKT   L  +   Q       G    +
Sbjct: 180 SAISTLDPALDELLN-GGLPTGYLTEVTGESGSGKTQFLLSLLLAVQLPEPRGLGKGAIY 238

Query: 101 VDAEHALDSIYARKL---GVDLKNLLISQPDTGEQALEITDMLVRSGAVD---------- 147
           +  E  L +    +L      L +L   +  T +  L I  M + S              
Sbjct: 239 ISTEAPLATSRLSQLLEYHPYLSDLPKDRAPTLDNILSINAMDLESQDHILNYQLPVAIT 298

Query: 148 -----IIVIDSVAALTPRAEIEGD--MGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
                ++VIDS+ +   RAE      +G S    +   + Q    L +        +V  
Sbjct: 299 RYDVGLVVIDSITS-NYRAEHTSHNVLGLSTRSGELARLGQM---LRNLAVAKNIAIVVA 354

Query: 201 NQMRMKIG 208
           NQ+  +  
Sbjct: 355 NQVSDRFD 362


>gi|41581328|emb|CAE47977.1| rad57 protein, putative [Aspergillus fumigatus]
          Length = 571

 Score = 45.6 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 65/188 (34%), Gaps = 30/188 (15%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-----KTGGTCAF 100
             +S+    LD  L  GG P G + E+ G   SGKT   L  +   Q       G    +
Sbjct: 104 SAISTLDPALDELLN-GGLPTGYLTEVTGESGSGKTQFLLSLLLAVQLPEPRGLGKGAIY 162

Query: 101 VDAEHALDSIYARKL---GVDLKNLLISQPDTGEQALEITDMLVRSGAVD---------- 147
           +  E  L +    +L      L +L   +  T +  L I  M + S              
Sbjct: 163 ISTEAPLATSRLSQLLEYHPYLSDLPKDRAPTLDNILSINAMDLESQDHILNYQLPVAIT 222

Query: 148 -----IIVIDSVAALTPRAEIEGD--MGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
                ++VIDS+ +   RAE      +G S    +   + Q    L +        +V  
Sbjct: 223 RYDVGLVVIDSITS-NYRAEHTSHNVLGLSTRSGELARLGQM---LRNLAVAKNIAIVVA 278

Query: 201 NQMRMKIG 208
           NQ+  +  
Sbjct: 279 NQVSDRFD 286


>gi|322371375|ref|ZP_08045925.1| putative circadian clock protein, KaiC [Haladaptatus
           paucihalophilus DX253]
 gi|320549043|gb|EFW90707.1| putative circadian clock protein, KaiC [Haladaptatus
           paucihalophilus DX253]
          Length = 479

 Score = 45.6 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 59/171 (34%), Gaps = 3/171 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + SG   +D  L  GG  +G +  I GP   GKTT     + ++   G        E 
Sbjct: 231 EPIPSGVPEIDELL-HGGIERGTVSVISGPTGVGKTTAGTQFMKEAANRGERSIIYMFEE 289

Query: 106 ALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           + ++   R   +G+ ++ ++     + E+   +    +         ++         + 
Sbjct: 290 STETFMQRNKSVGIPVEEMMAEGTLSVEEVEPLDHSAMEFARKVRHEVEDNDISIVMIDG 349

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
                 S+       + + L  L+  +      ++ ++++    G    + 
Sbjct: 350 LQGYKLSVQSEDNETLVRKLHTLSRYLKSMGVTVILVDEIGTVTGEFRATE 400



 Score = 36.7 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 93/281 (33%), Gaps = 22/281 (7%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
            GLD  +  GG   GR   + G   +GKT L ++ +  S   G T  FV+ E +   I  
Sbjct: 2   PGLDEIV-HGGLIPGRSYLVRGDPGTGKTILGINYLTASLDAGETVLFVNLEESESDIRQ 60

Query: 113 RK--LGVDLKNLLI------SQPDTGEQALEI-TDMLVRSGAVDIIVIDSVAALTPRAEI 163
               LG+DL ++        S     +Q+ +I +   V    +   + + V  + P    
Sbjct: 61  NAATLGIDLDDVHFLDLSPDSDVFVDDQSYDIFSPSEVEQEPLTQAITERVETIQPDRVF 120

Query: 164 EGDMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFI--NQMRMKIGVMFGSPETTTGG 220
              + +            + +      +      ++    N        +    + T   
Sbjct: 121 IDPLTKLRHLTSDEYQFRKQVIAFMRYLKEQGATVLVTSENTANSPDDDLQYMTDGTIEL 180

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI-MYGEGISFF 279
              +   ++ +   R  SI++       +     V  ++ +     E+       G+   
Sbjct: 181 KRSERGRTISVPKFRGSSIREGRHSMRIEAGGLAVYPELTTSKSDGEYVAEPIPSGVPEI 240

Query: 280 GELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK-IFLRE 319
            EL+  G++   V       S      G G+  +   F++E
Sbjct: 241 DELLHGGIERGTV-------SVISGPTGVGKTTAGTQFMKE 274


>gi|239980284|ref|ZP_04702808.1| DNA repair protein RadA [Streptomyces albus J1074]
 gi|291452148|ref|ZP_06591538.1| DNA repair protein [Streptomyces albus J1074]
 gi|291355097|gb|EFE81999.1| DNA repair protein [Streptomyces albus J1074]
          Length = 472

 Score = 45.6 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 46/128 (35%), Gaps = 3/128 (2%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +G   LD  LG GG   G +V + G    GK+TL L   A++        +V  E +  
Sbjct: 74  PTGVPELDRVLG-GGLVPGAVVLVAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESAS 132

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +  R     +  L      T E  L      + +    ++V+DSV  +          G
Sbjct: 133 QVRLRA--DRIDALSDHLYLTAETDLSAVLGHLDAVKPSLLVLDSVQTVASPEIDGAPGG 190

Query: 169 ESLPGMQA 176
            +     A
Sbjct: 191 MAQVREVA 198


>gi|269926143|ref|YP_003322766.1| DnaB domain protein helicase domain protein [Thermobaculum terrenum
           ATCC BAA-798]
 gi|269789803|gb|ACZ41944.1| DnaB domain protein helicase domain protein [Thermobaculum terrenum
           ATCC BAA-798]
          Length = 341

 Score = 45.6 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E   +G   LD  +  GG  +G +  + G E +GKTT AL         G    ++  EH
Sbjct: 34  ECYPTGIRALDRRIA-GGLRRGNLFLLGGGEGAGKTTFALQIARNMAIEGVDVIYICYEH 92

Query: 106 ALDSIYARKLGVD 118
           + + +  R + ++
Sbjct: 93  SEEELMLRLISME 105


>gi|225076233|ref|ZP_03719432.1| hypothetical protein NEIFLAOT_01270 [Neisseria flavescens
           NRL30031/H210]
 gi|224952357|gb|EEG33566.1| hypothetical protein NEIFLAOT_01270 [Neisseria flavescens
           NRL30031/H210]
          Length = 458

 Score = 45.6 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 56/143 (39%), Gaps = 4/143 (2%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +    +G   LD  LG GG   G ++ + G    GK+TL L TIA+  ++     +V  
Sbjct: 68  EVPRNPTGMGELDRVLG-GGLVDGAVILLGGNPGIGKSTLLLQTIAKMAQS-RKVLYVSG 125

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E +   +  R     L+          E  +E     ++    +++VIDS+  +      
Sbjct: 126 EESAQQVALRAQ--RLELPTEGVNLLAEIRMEAIQAALKQHQPEVVVIDSIQTMYSDQIT 183

Query: 164 EGDMGESLPGMQARLMSQALRKL 186
                 S     A  +++  +++
Sbjct: 184 SAPGSVSQVRECAAQLTRMAKQM 206


>gi|325131984|gb|EGC54683.1| DNA repair protein RadA [Neisseria meningitidis M6190]
          Length = 459

 Score = 45.6 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 4/146 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
               +    +G   LD  LG GG   G ++ + G    GK+TL L TIA+  ++     +
Sbjct: 65  TATEVPRNPTGMGELDRVLG-GGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQS-RKVLY 122

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E +   +  R     L+          E  +E     ++    +++VIDS+  +   
Sbjct: 123 VSGEESAQQVALRAQ--RLELPTEGVNLLAEIRMEAIQAALKQHQPEVVVIDSIQTMYSD 180

Query: 161 AEIEGDMGESLPGMQARLMSQALRKL 186
                    S     A  +++  +++
Sbjct: 181 QITSAPGSVSQVRECAAQLTRMAKQM 206


>gi|325126325|gb|ADY85655.1| DNA repair protein [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 458

 Score = 45.6 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 4/116 (3%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E  E V + S  L+  LG GG   G +V I G    GK+TL L  +++  +         
Sbjct: 70  EKEERVLTKSSELNRVLG-GGIVPGSLVLIGGDPGIGKSTLMLQIMSELAEKYKVLYVSG 128

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
            E A             ++ ++  P++    +E     +     D +VIDS+  + 
Sbjct: 129 EESASQIKLRADRLGLGQSPMLLYPES---NMEHIRDQIDDVKPDFVVIDSIQTMN 181


>gi|153001729|ref|YP_001367410.1| DNA repair protein RadA [Shewanella baltica OS185]
 gi|160876464|ref|YP_001555780.1| DNA repair protein RadA [Shewanella baltica OS195]
 gi|217972335|ref|YP_002357086.1| DNA repair protein RadA [Shewanella baltica OS223]
 gi|304410245|ref|ZP_07391864.1| DNA repair protein RadA [Shewanella baltica OS183]
 gi|307302044|ref|ZP_07581802.1| DNA repair protein RadA [Shewanella baltica BA175]
 gi|151366347|gb|ABS09347.1| DNA repair protein RadA [Shewanella baltica OS185]
 gi|160861986|gb|ABX50520.1| DNA repair protein RadA [Shewanella baltica OS195]
 gi|217497470|gb|ACK45663.1| DNA repair protein RadA [Shewanella baltica OS223]
 gi|304351654|gb|EFM16053.1| DNA repair protein RadA [Shewanella baltica OS183]
 gi|306914082|gb|EFN44503.1| DNA repair protein RadA [Shewanella baltica BA175]
 gi|315268654|gb|ADT95507.1| DNA repair protein RadA [Shewanella baltica OS678]
          Length = 454

 Score = 45.6 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 8/146 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
              +  + S    LD  LG GG   G  + I G   +GK+TL L T+    +      +V
Sbjct: 68  LNALPRILSHFGELDRVLG-GGIVPGSAILIGGHPGAGKSTLLLQTLCHLAEQ-MPALYV 125

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+    L +    + EQ  E+    +      +IV+DS+  +  
Sbjct: 126 TGEESLQQVAMRAHRLGLPTNKLRMLSETSVEQICEVALKELPK----VIVVDSIQVMHM 181

Query: 160 RAEIEGDMGESLPGMQARLMSQALRK 185
                     S     A  +++  ++
Sbjct: 182 SDVASSPGSVSQVRESASYLTRFAKE 207


>gi|86606547|ref|YP_475310.1| circadian clock protein KaiC [Synechococcus sp. JA-3-3Ab]
 gi|86555089|gb|ABD00047.1| circadian clock protein KaiC [Synechococcus sp. JA-3-3Ab]
          Length = 534

 Score = 45.6 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 67/210 (31%), Gaps = 15/210 (7%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           MQL  + S       VSSG   LD   G GGF K  I+   G   +GKT+L    + +  
Sbjct: 269 MQLTQRSSNV----RVSSGIEKLDEMCG-GGFFKDSIILATGATGTGKTSLVSKFLERGC 323

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI---I 149
             G  C     E +   +        +      +    +  L+I      S  ++     
Sbjct: 324 LNGERCILFAYEESRAQLARNASSWGID----FEEFERQGLLKIICAYPESAGLEDHLQK 379

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN---QMRMK 206
           +   + A  P       +     G+      Q +  +T    + +    F N   Q    
Sbjct: 380 IKTEMMAFKPSRMAIDSLSALARGVSQNAFRQFVIGVTGLAKQEEITGFFTNTTDQFMGS 439

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
             +      T T    L  Y  +R ++ R 
Sbjct: 440 HSITESHISTITDTIILLQYVEIRGEMARA 469



 Score = 40.2 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 59/173 (34%), Gaps = 10/173 (5%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ----SQKT 94
           G    GI    +G  G +  +  GG P GR   + G   +GKT  AL  +       Q+ 
Sbjct: 29  GPEPRGIPKKQTGIEGFED-ISHGGLPLGRTTLVSGTSGTGKTLFALQFLYNGIVKYQEP 87

Query: 95  GGTCAFVDAEHALDSI-----YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           G    F +    +        +  +  +D   L I       +  E++     S  ++ I
Sbjct: 88  GIFVTFEETPADIIRNAASFGWDLQALIDKGQLFILDASPDPEGYEVSGNFDLSALIERI 147

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                     R  I+           A ++ + L +LT+ + ++    V   +
Sbjct: 148 QYAIRKYKAKRVAIDSVTAIFQQYEPAGVVRRELFRLTARLKQANVTTVMTTE 200


>gi|57641724|ref|YP_184202.1| ATPase [Thermococcus kodakarensis KOD1]
 gi|57160048|dbj|BAD85978.1| ATPase, RecA superfamily [Thermococcus kodakarensis KOD1]
          Length = 249

 Score = 45.6 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGGTCAFV 101
           +  V SG  G D  L  GGFPKG  V + GP  SGKTT A+  + +        G    +
Sbjct: 7   VPRVKSGIPGFDE-LVNGGFPKGTTVLVTGPTGSGKTTFAVQFVYKGVELYDEPGVIVTL 65

Query: 102 DAEHALDSIYARKLGVDLKNL 122
           +          R  G D++  
Sbjct: 66  EERAVDLRREMRAFGWDIEKY 86


>gi|325127888|gb|EGC50792.1| DNA repair protein RadA [Neisseria meningitidis N1568]
          Length = 459

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 4/146 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
               +    +G   LD  LG GG   G ++ + G    GK+TL L TIA+  ++     +
Sbjct: 65  TATEVPRNPTGMGELDRVLG-GGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQS-RKVLY 122

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E +   +  R     L+          E  +E     ++    +++VIDS+  +   
Sbjct: 123 VSGEESAQQVALRAQ--RLELPTEGVNLLAEIRMEAIQAALKQHQPEVVVIDSIQTMYSD 180

Query: 161 AEIEGDMGESLPGMQARLMSQALRKL 186
                    S     A  +++  +++
Sbjct: 181 QITSAPGSVSQVRECAAQLTRMAKQM 206


>gi|161869728|ref|YP_001598895.1| DNA repair protein RadA [Neisseria meningitidis 053442]
 gi|161595281|gb|ABX72941.1| DNA repair protein [Neisseria meningitidis 053442]
          Length = 459

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 4/146 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
               +    +G   LD  LG GG   G ++ + G    GK+TL L TIA+  ++     +
Sbjct: 65  TATEVPRNPTGMGELDRVLG-GGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQS-RKVLY 122

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E +   +  R     L+          E  +E     ++    +++VIDS+  +   
Sbjct: 123 VSGEESAQQVALRAQ--RLELPTEGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQTMYSD 180

Query: 161 AEIEGDMGESLPGMQARLMSQALRKL 186
                    S     A  +++  +++
Sbjct: 181 QITSAPGSVSQVRECAAQLTRMAKQM 206


>gi|104774499|ref|YP_619479.1| DNA repair protein RadA [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116514611|ref|YP_813517.1| DNA repair protein RadA [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103423580|emb|CAI98508.1| Putative ATP-dependent serine protease [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116093926|gb|ABJ59079.1| DNA replication and repair protein RadA [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 458

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 4/116 (3%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E  E V + S  L+  LG GG   G +V I G    GK+TL L  +++  +         
Sbjct: 70  EKEERVLTKSSELNRVLG-GGIVPGSLVLIGGDPGIGKSTLMLQIMSELAEKYKVLYVSG 128

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
            E A             ++ ++  P++    +E     +     D +VIDS+  + 
Sbjct: 129 EESASQIKLRADRLGLGQSPMLLYPES---NMEHIRDQIDDVKPDFVVIDSIQTMN 181


>gi|282850308|ref|ZP_06259687.1| DNA repair protein RadA [Veillonella parvula ATCC 17745]
 gi|282579801|gb|EFB85205.1| DNA repair protein RadA [Veillonella parvula ATCC 17745]
          Length = 457

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 55/144 (38%), Gaps = 7/144 (4%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  VS+    +D  LG GG   G ++ + G    GK+TL L    +   T G   +   
Sbjct: 68  SIARVSTTFGEIDRVLG-GGIVPGALMLLGGDPGIGKSTLLLQVSQKVADTVGAVLYASG 126

Query: 104 EHALDS--IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           E +     + A +L ++ + L +      +  LE  + +  S    ++VIDS+  +    
Sbjct: 127 EESQLQLKLRAERLHINSERLQVIADTDLDHILEQAEAITPS----LLVIDSIQTMYTGD 182

Query: 162 EIEGDMGESLPGMQARLMSQALRK 185
                   S        + +  ++
Sbjct: 183 IDAAPGSVSQVRECTSRLLRFCKE 206


>gi|194302141|gb|ACF40976.1| RAD51D transcript variant delta 10 [Mus musculus]
          Length = 307

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 64/214 (29%), Gaps = 31/214 (14%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK----- 93
             +     ++S+G   LD  L   G   G + EI G   SGKT + L   A         
Sbjct: 73  EELKTSTAILSTGIGSLDKLL-DAGLYTGEVTEIVGGPGSGKTQVCLCVAANVAHSLQQN 131

Query: 94  ------TGGTCAF----------VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
                  GG  A            D E    ++   ++        +       +     
Sbjct: 132 VLYVDSNGGMTASRLLQLLQARTQDEEKQASALQRIQVVRSFDIFRMLDMLQDLRGTIAQ 191

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
                SGAV ++++DSV A+         +          LM Q  R+L          +
Sbjct: 192 QEATSSGAVKVVIVDSVTAVV------APLLGGQQREGLALMMQLARELKILARDLGVAV 245

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
           V  N +        G       G +  F  S R+
Sbjct: 246 VVTNHLTRDWD---GRRFKPALGRSWSFVPSTRI 276


>gi|119946267|ref|YP_943947.1| DNA repair protein RadA [Psychromonas ingrahamii 37]
 gi|119864871|gb|ABM04348.1| DNA repair protein RadA [Psychromonas ingrahamii 37]
          Length = 470

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 106/298 (35%), Gaps = 37/298 (12%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E    VS+G   LD  LG GG   G +V I G   SGKTTL L  +A+      +  +V 
Sbjct: 77  ENATRVSTGLSELDRVLG-GGITLGSVVLISGDPGSGKTTL-LTKVAEVMSQSMSTLYVT 134

Query: 103 AEHALDSIYARKLGVDLKNL-LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           AE +L     R +     N    +   +    +E          V  ++ DS+ A     
Sbjct: 135 AEESLSQWAKRGIERLKLNFNEDNFLLSDTDCIEDIVDQCLENNVRFLIADSIQAFESNQ 194

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
                 G +   + A+++++  ++       +  ++  +N+     G         T  +
Sbjct: 195 AEGTAGGVTQVKICAKILNRLCKQH----GITLILVGQVNKNSQMAGPQTLKHIIDTAIH 250

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE 281
                +SVR+                    ++  KN+     +   F +   +G+     
Sbjct: 251 IEVNDASVRI--------------------LRADKNRFGDTEQVGIFQMT-EKGMFSVDN 289

Query: 282 LIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI--ESLLRQNAGL 337
              L +       SG+   F+G  +   ++ ++  L E   +A  +  E  +R   G+
Sbjct: 290 PSRLFL-------SGSEEHFEGSAISVIKDGARNLLIEIQALATEVEGEKSIRNCIGI 340


>gi|6755278|ref|NP_035365.1| DNA repair protein RAD51 homolog 4 [Mus musculus]
 gi|7388045|sp|O55230|RA51D_MOUSE RecName: Full=DNA repair protein RAD51 homolog 4; AltName:
           Full=R51H3; AltName: Full=RAD51 homolog D; AltName:
           Full=RAD51-like protein 3
 gi|2696715|dbj|BAA24010.1| Trad [Mus musculus]
 gi|2920580|gb|AAC40093.1| RAD51D [Mus musculus]
 gi|3005974|emb|CAA75679.1| R51H3 [Mus musculus]
 gi|12857292|dbj|BAB30965.1| unnamed protein product [Mus musculus]
 gi|29165795|gb|AAH49136.1| Rad51l3 protein [Mus musculus]
 gi|56205883|emb|CAI25493.1| RAD51-like 3 (S. cerevisiae) [Mus musculus]
 gi|56206507|emb|CAI24227.1| RAD51-like 3 (S. cerevisiae) [Mus musculus]
 gi|74188783|dbj|BAE28119.1| unnamed protein product [Mus musculus]
 gi|74216007|dbj|BAE23698.1| unnamed protein product [Mus musculus]
          Length = 329

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 64/214 (29%), Gaps = 31/214 (14%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK----- 93
             +     ++S+G   LD  L   G   G + EI G   SGKT + L   A         
Sbjct: 73  EELKTSTAILSTGIGSLDKLL-DAGLYTGEVTEIVGGPGSGKTQVCLCVAANVAHSLQQN 131

Query: 94  ------TGGTCAF----------VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
                  GG  A            D E    ++   ++        +       +     
Sbjct: 132 VLYVDSNGGMTASRLLQLLQARTQDEEKQASALQRIQVVRSFDIFRMLDMLQDLRGTIAQ 191

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
                SGAV ++++DSV A+         +          LM Q  R+L          +
Sbjct: 192 QEATSSGAVKVVIVDSVTAVV------APLLGGQQREGLALMMQLARELKILARDLGVAV 245

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
           V  N +        G       G +  F  S R+
Sbjct: 246 VVTNHLTRDWD---GRRFKPALGRSWSFVPSTRI 276


>gi|11994863|dbj|BAB19970.1| Trad [Mus musculus]
 gi|148683734|gb|EDL15681.1| RAD51-like 3 (S. cerevisiae), isoform CRA_h [Mus musculus]
          Length = 329

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 64/214 (29%), Gaps = 31/214 (14%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK----- 93
             +     ++S+G   LD  L   G   G + EI G   SGKT + L   A         
Sbjct: 73  EELKTSTAILSTGIGSLDKLL-DAGLYTGEVTEIVGGPGSGKTQVCLCVAANVAHSLQQN 131

Query: 94  ------TGGTCAF----------VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
                  GG  A            D E    ++   ++        +       +     
Sbjct: 132 VLYVDSNGGMTASRLLQLLQARTQDEEKQASALQRIQVVRSFDIFRMLDMLQDLRGTIAQ 191

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
                SGAV ++++DSV A      +   +          LM Q  R+L          +
Sbjct: 192 QEATSSGAVKVVIVDSVTA------VAAPLLGGQQREGLALMMQLARELKILARDLGVAV 245

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
           V  N +        G       G +  F  S R+
Sbjct: 246 VVTNHLTRDWD---GRRFKPALGRSWSFVPSTRI 276


>gi|66810419|ref|XP_638929.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4]
 gi|60467564|gb|EAL65585.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4]
          Length = 564

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101
           +S+G   +D  LG GG     I EI G   SGKT L +    Q Q         G C ++
Sbjct: 167 LSTGCKIMDKCLG-GGISPIGITEIAGESGSGKTQLCIQLSLQVQLPFEMGGLNGACLYI 225

Query: 102 DAEHALDSIYARKL 115
             E    +    ++
Sbjct: 226 TTEPPFPTKRLNQM 239


>gi|325133704|gb|EGC56360.1| DNA repair protein RadA [Neisseria meningitidis M13399]
          Length = 459

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 4/146 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
               +    +G   LD  LG GG   G ++ + G    GK+TL L TIA+  ++     +
Sbjct: 65  TATEVPRNPTGMGELDRVLG-GGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQS-RKVLY 122

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E +   +  R     L+          E  +E     ++    +++VIDS+  +   
Sbjct: 123 VSGEESAQQVALRAQ--RLELPTEGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQTMYSD 180

Query: 161 AEIEGDMGESLPGMQARLMSQALRKL 186
                    S     A  +++  +++
Sbjct: 181 QITSAPGSVSQVRECAAQLTRMAKQM 206


>gi|304387909|ref|ZP_07370082.1| DNA repair protein RadA [Neisseria meningitidis ATCC 13091]
 gi|304338006|gb|EFM04143.1| DNA repair protein RadA [Neisseria meningitidis ATCC 13091]
          Length = 464

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 4/146 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
               +    +G   LD  LG GG   G ++ + G    GK+TL L TIA+  ++     +
Sbjct: 70  TATEVPRNPTGMGELDRVLG-GGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQS-RKVLY 127

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E +   +  R     L+          E  +E     ++    +++VIDS+  +   
Sbjct: 128 VSGEESAQQVALRAQ--RLELPTDGVNLLAEIRMEAIQAALKQHQPEVVVIDSIQTMYSD 185

Query: 161 AEIEGDMGESLPGMQARLMSQALRKL 186
                    S     A  +++  +++
Sbjct: 186 QITSAPGSVSQVRECAAQLTRMAKQM 211


>gi|296840923|ref|ZP_06899435.1| DNA repair protein RadA [Neisseria polysaccharea ATCC 43768]
 gi|296839587|gb|EFH23525.1| DNA repair protein RadA [Neisseria polysaccharea ATCC 43768]
          Length = 464

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 4/146 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
               +    +G   LD  LG GG   G ++ + G    GK+TL L TIA+  ++     +
Sbjct: 70  TATEVPRNPTGMGELDRVLG-GGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQS-RKVLY 127

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E +   +  R     L+          E  +E     ++    +++VIDS+  +   
Sbjct: 128 VSGEESAQQVALRAQ--RLELPTDGVNLLAEIRMEAIQAALKQHQPEVVVIDSIQTMYSD 185

Query: 161 AEIEGDMGESLPGMQARLMSQALRKL 186
                    S     A  +++  +++
Sbjct: 186 QITSAPGSVSQVRECAAQLTRMAKQM 211


>gi|254672846|emb|CBA07050.1| DNA repair protein [Neisseria meningitidis alpha275]
          Length = 459

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 4/146 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
               +    +G   LD  LG GG   G ++ + G    GK+TL L TIA+  ++     +
Sbjct: 65  TATEVPRNPTGMGELDRVLG-GGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQS-RKVLY 122

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E +   +  R     L+          E  +E     ++    +++VIDS+  +   
Sbjct: 123 VSGEESAQQVALRAQ--RLELPTEGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQTMYSD 180

Query: 161 AEIEGDMGESLPGMQARLMSQALRKL 186
                    S     A  +++  +++
Sbjct: 181 QITSAPGSVSQVRECAAQLTRMAKQM 206


>gi|94967098|ref|YP_589146.1| putative circadian clock protein, KaiC [Candidatus Koribacter
           versatilis Ellin345]
 gi|94549148|gb|ABF39072.1| putative circadian clock protein, KaiC [Candidatus Koribacter
           versatilis Ellin345]
          Length = 532

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 64/184 (34%), Gaps = 11/184 (5%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
           ++  +    E+ S+G  GLD  LG GG  +  +  I G   +GKTT+A+  + +  + G 
Sbjct: 21  TEAKVIAPAELFSTGIAGLDDILG-GGLSRNHLFLIEGDPGTGKTTIAMQFLLEGLRGGH 79

Query: 97  TCAFVDAEHA----LDSIYARKLGVDLKNLLISQPD-----TGEQALEITDMLVRSGAVD 147
           +  +V    +    L+   A     D   +    PD        Q        +      
Sbjct: 80  SGLYVTLSESKHELLEIARAHGWSFDAIPIFEMVPDDKQLKPEAQYTVFNPSEIELTDTI 139

Query: 148 IIVIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
             V++ V  L P   +   + E  L         + +  L    S   C ++ ++     
Sbjct: 140 NSVLEEVERLHPVRVVFDSLSELRLLARDPLRYRRQILALKRYFSGRDCTVMLLDDRTAD 199

Query: 207 IGVM 210
           I   
Sbjct: 200 IQDR 203


>gi|325137815|gb|EGC60390.1| DNA repair protein RadA [Neisseria meningitidis ES14902]
          Length = 459

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 4/146 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
               +    +G   LD  LG GG   G ++ + G    GK+TL L TIA+  ++     +
Sbjct: 65  TATEVPRNPTGMGELDRVLG-GGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQS-RKVLY 122

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E +   +  R     L+          E  +E     ++    +++VIDS+  +   
Sbjct: 123 VSGEESAQQVALRAQ--RLELPTEGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQTMYSD 180

Query: 161 AEIEGDMGESLPGMQARLMSQALRKL 186
                    S     A  +++  +++
Sbjct: 181 QITSAPGSVSQVRECAAQLTRMAKQM 206


>gi|319638579|ref|ZP_07993341.1| DNA repair protein radA [Neisseria mucosa C102]
 gi|317400328|gb|EFV80987.1| DNA repair protein radA [Neisseria mucosa C102]
          Length = 458

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 4/146 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
               +    +G   LD  LG GG   G ++ + G    GK+TL L TIA+  ++     +
Sbjct: 65  TATEVPRNPTGMGELDRVLG-GGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQS-RKVLY 122

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E +   +  R     L+          E  +E     ++    +++VIDS+  +   
Sbjct: 123 VSGEESAQQVALRAQ--RLELPTEGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQTMYSD 180

Query: 161 AEIEGDMGESLPGMQARLMSQALRKL 186
                    S     A  +++  +++
Sbjct: 181 QITSAPGSVSQVRECAAQLTRMAKQM 206


>gi|308388968|gb|ADO31288.1| putative DNA repair protein [Neisseria meningitidis alpha710]
 gi|325135995|gb|EGC58605.1| DNA repair protein RadA [Neisseria meningitidis M0579]
 gi|325202422|gb|ADY97876.1| DNA repair protein RadA [Neisseria meningitidis M01-240149]
 gi|325207826|gb|ADZ03278.1| DNA repair protein RadA [Neisseria meningitidis NZ-05/33]
          Length = 459

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 4/146 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
               +    +G   LD  LG GG   G ++ + G    GK+TL L TIA+  ++     +
Sbjct: 65  TATEVPRNPTGMGELDRVLG-GGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQS-RKVLY 122

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E +   +  R     L+          E  +E     ++    +++VIDS+  +   
Sbjct: 123 VSGEESAQQVALRAQ--RLELPTEGVNLLAEIRMEAIQAALKQHQPEVVVIDSIQTMYSD 180

Query: 161 AEIEGDMGESLPGMQARLMSQALRKL 186
                    S     A  +++  +++
Sbjct: 181 QITSAPGSVSQVRECAAQLTRMAKQM 206


>gi|282162694|ref|YP_003355079.1| hypothetical protein MCP_0024 [Methanocella paludicola SANAE]
 gi|282155008|dbj|BAI60096.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 237

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA---QSQKTGGT 97
           + + I+ VS+G  G D  L  GG   G  V + GP  SGK+   +  +    +    GG 
Sbjct: 1   MAQHIDYVSTGVPGADTILN-GGIYPGSAVLVSGPPGSGKSIFGMQFVYAGARDHGEGGL 59

Query: 98  CAFVDAEHALDSIYARKLGVDLKN 121
              ++      S YA  +G++  +
Sbjct: 60  IVAIEETDRSLSEYAGSIGLEAWD 83


>gi|227821451|ref|YP_002825421.1| DNA repair protein RadA [Sinorhizobium fredii NGR234]
 gi|227340450|gb|ACP24668.1| DNA repair protein RadA [Sinorhizobium fredii NGR234]
          Length = 467

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 71/199 (35%), Gaps = 8/199 (4%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E    + +G   LD   G GGF +G  + + G    GK+T+ +   A   +      +V 
Sbjct: 66  EDAPRIETGISELDRVTG-GGFVRGSALLVGGDPGIGKSTVLMQAAAALSRRKHRVIYVS 124

Query: 103 AEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
            E A+  +   A++LG    ++L++     E   +I   L      D+++IDS+  L   
Sbjct: 125 GEEAIAQVRLRAQRLGAADSDVLLAAETNVE---DILATLSEGKRPDLVIIDSIQTLWSD 181

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM-KIGVMFGSPETTTG 219
                    +      + M +   K T +       +    Q+   ++            
Sbjct: 182 IVDSAPGTVTQVRTGVQAMIRFA-KQTGTAVVLVGHVTKEGQIAGPRVVEHMVDAVLYFE 240

Query: 220 GNALKFYSSVRLDIRRVGS 238
           G+    Y  +R    R G 
Sbjct: 241 GDRGHHYRILRTVKNRFGP 259


>gi|134097049|ref|YP_001102710.1| DNA repair protein RadA [Saccharopolyspora erythraea NRRL 2338]
 gi|291007010|ref|ZP_06564983.1| DNA repair protein RadA [Saccharopolyspora erythraea NRRL 2338]
 gi|133909672|emb|CAL99784.1| DNA repair protein [Saccharopolyspora erythraea NRRL 2338]
          Length = 460

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 6/119 (5%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT--GGTCAFVDAE 104
            VS+G   LD  LG GG   G +V + G    GK+TL L    +   T  GG   +V  E
Sbjct: 73  AVSTGIGELDRVLG-GGIVPGAVVLMAGEPGVGKSTLLLEVAHRWAATGGGGPSLYVTGE 131

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL-TPRAE 162
            +   +  R    D  +  +      +  L      V S    ++++DSV  + +P AE
Sbjct: 132 ESAGQVRLRAERTDSVHPQLYLGAESD--LGSVLGHVDSVKPGLLIVDSVQTVQSPEAE 188


>gi|3107925|dbj|BAA25914.1| Trad [Homo sapiens]
          Length = 328

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 69/247 (27%), Gaps = 23/247 (9%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGT 97
             +     ++S+G   LD  L   G   G + EI G   SGKT + L   A         
Sbjct: 73  EELKTSTAILSTGIGSLDKLL-DAGLYTGEVTEIVGGPGSGKTQVCLCMAANVAHGLQQN 131

Query: 98  CAFVDAEHALDSIYARKL--------------GVDLKNLLISQPDTGEQALEITDMLVRS 143
             +VD+   L +    +L                 ++ +           L+     V  
Sbjct: 132 VLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALQRIQVVHAFDIFQMLDVLQELRGTVAQ 191

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
                     V  +     +   +          LM Q  R+L +        +V  N +
Sbjct: 192 QVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLARDLGMAVVVTNHI 251

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
                           G +  F  S R+ +  +    +    +G +    + K+      
Sbjct: 252 TRDRDSGRL---KPALGRSWSFVPSTRILLDTI----EGAGASGGRRMACLAKSSRQPTG 304

Query: 264 KQVEFDI 270
            Q   DI
Sbjct: 305 FQEMVDI 311


>gi|319943590|ref|ZP_08017872.1| family 4 uracil-DNA glycosylase [Lautropia mirabilis ATCC 51599]
 gi|319743405|gb|EFV95810.1| family 4 uracil-DNA glycosylase [Lautropia mirabilis ATCC 51599]
          Length = 223

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 1/104 (0%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGP-ESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           +++G   LD AL +GG+P   + E+  P     +  L    +A+  + GG    V     
Sbjct: 48  IATGIRALDAALPLGGWPAASLSEVLSPAPGLSELRLLWPMLARLSQAGGRVVLVAPPFV 107

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
             +I  ++ GV L  L I        AL   +  +RSG+   ++
Sbjct: 108 PCAIAWQRAGVLLSRLEIIHAPEPADALWAFEQCLRSGSCAAVL 151


>gi|313835642|gb|EFS73356.1| DNA repair protein RadA [Propionibacterium acnes HL037PA2]
 gi|314928314|gb|EFS92145.1| DNA repair protein RadA [Propionibacterium acnes HL044PA1]
 gi|314970243|gb|EFT14341.1| DNA repair protein RadA [Propionibacterium acnes HL037PA3]
 gi|328908104|gb|EGG27863.1| DNA repair protein RadA [Propionibacterium sp. P08]
          Length = 479

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 76/221 (34%), Gaps = 26/221 (11%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   LD  LG GG   G +  + G    GK+TL L+  A+  K G    +V  E +   
Sbjct: 71  TGISELDRVLG-GGLVPGAVALLAGEPGVGKSTLLLNVAAKWAKAGRRTLYVTGEESTAQ 129

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +  R      K L        E  L      +      ++V+DSV  +          G 
Sbjct: 130 VRLRA--GRTKALADELYLASETDLGTVLGHIEQTEPSLMVLDSVQTVGTSQADGSPGGV 187

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           S        + +        +++ + + V I     K G +        G   ++    V
Sbjct: 188 SQVREVTGALVR--------VAKRRGMAVIIVGHVTKEGSI-------AGPRTMEHLVDV 232

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
            L+        + D  +G +  V+  KN+     +   F++
Sbjct: 233 VLNF-------EGDRHSGFRM-VRATKNRYGPADEVGCFEM 265


>gi|309378189|emb|CBX23181.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 459

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 4/146 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
               +    +G   LD  LG GG   G ++ + G    GK+TL L TIA+  ++     +
Sbjct: 65  TATEVPRNPTGMGELDRVLG-GGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQS-RKVLY 122

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E +   +  R     L+          E  +E     ++    +++VIDS+  +   
Sbjct: 123 VSGEESAQQVALRAQ--RLELPTDGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQTMYSD 180

Query: 161 AEIEGDMGESLPGMQARLMSQALRKL 186
                    S     A  +++  +++
Sbjct: 181 QITSAPGSVSQVRECAAQLTRMAKQM 206


>gi|329939493|ref|ZP_08288829.1| DNA repair protein [Streptomyces griseoaurantiacus M045]
 gi|329301722|gb|EGG45616.1| DNA repair protein [Streptomyces griseoaurantiacus M045]
          Length = 469

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 5/129 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G +V + G    GK+TL L   A++        +V  E +  
Sbjct: 74  STGVPELDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLDVAAKAAAPEHRTLYVTGEESAS 132

Query: 109 SIYARKLGVD-LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
            +  R   +  L + L    +T    L      +      ++++DSV  +          
Sbjct: 133 QVRMRADRIKALDDHLYLAAETD---LAAVLGHLDEVKPSLLIVDSVQTVASPEIDGAPG 189

Query: 168 GESLPGMQA 176
           G +     A
Sbjct: 190 GMAQVREVA 198


>gi|295694807|ref|YP_003588045.1| DNA repair protein RadA [Bacillus tusciae DSM 2912]
 gi|295410409|gb|ADG04901.1| DNA repair protein RadA [Bacillus tusciae DSM 2912]
          Length = 456

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 5/114 (4%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E  S+G   LD  LG GG   G +V I G    GK+TL L   AQ  +  G   +V  E 
Sbjct: 69  ERWSTGFGELDRVLG-GGLVPGSLVLIGGDPGIGKSTLLLQASAQIAQARGPVLYVSGEE 127

Query: 106 ALDSIYARKLGVD-LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           +   I+ R   +  ++  L+  P+T   A+E    +V       +VIDS+  + 
Sbjct: 128 STRQIHLRARRLKAMEPALLVLPETDLGAVE---RVVERIDPRCLVIDSIQTVH 178


>gi|325129905|gb|EGC52706.1| DNA repair protein RadA [Neisseria meningitidis OX99.30304]
          Length = 459

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 4/146 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
               +    +G   LD  LG GG   G ++ + G    GK+TL L TIA+  ++     +
Sbjct: 65  TATEVPRNPTGMGELDRVLG-GGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQS-RKVLY 122

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E +   +  R     L+          E  +E     ++    +++VIDS+  +   
Sbjct: 123 VSGEESAQQVALRAQ--RLELPTEGVNLLAEIRMEAIQAALKQHQPEVVVIDSIQTMYSD 180

Query: 161 AEIEGDMGESLPGMQARLMSQALRKL 186
                    S     A  +++  +++
Sbjct: 181 QITSAPGSVSQVRECAAQLTRMAKQM 206


>gi|308071006|ref|YP_003872611.1| DNA repair protein, radA-like protein [Paenibacillus polymyxa E681]
 gi|305860285|gb|ADM72073.1| DNA repair protein, radA-like protein [Paenibacillus polymyxa E681]
          Length = 457

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 54/142 (38%), Gaps = 7/142 (4%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            + +G   L+  LG GG   G +V + G    GK+TL L T  +   TG    +V  E +
Sbjct: 72  RILTGIGELNRVLG-GGVVPGSLVLVGGDPGIGKSTLMLQTSNELALTGLKVLYVSGEES 130

Query: 107 LDS--IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +    + A +LG    +L +         LE  +  V S   + +VIDS+  +       
Sbjct: 131 VRQTKLRADRLGALSPSLYVLCETN----LETIEEAVDSLKPEFLVIDSIQTVYLPEVTS 186

Query: 165 GDMGESLPGMQARLMSQALRKL 186
                +          +  + L
Sbjct: 187 APGSVAQVRECTSRFMRIAKGL 208


>gi|281412256|ref|YP_003346335.1| DNA repair protein RadA [Thermotoga naphthophila RKU-10]
 gi|281373359|gb|ADA66921.1| DNA repair protein RadA [Thermotoga naphthophila RKU-10]
          Length = 441

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 11/120 (9%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+G   LD A   GG   G+++ + G    GK+T+AL    +  + G        
Sbjct: 56  SLERLSTGFSELDRAF-RGGIVPGQVILLSGEPGIGKSTIALQIAEKFAERGLVVYV--- 111

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV----RSGAVDIIVIDSVAALTP 159
                    ++L +    LL+ +       LE     +    R+  V  +V+DS+  +  
Sbjct: 112 ---SGEESPQQLKLRADRLLMKRKKNILLTLENDIDEIISSLRNERVSFMVVDSIQTVFS 168


>gi|207346868|gb|EDZ73231.1| YDR004Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 264

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 56/172 (32%), Gaps = 23/172 (13%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGG 96
            G E  ++  + +D  LG GG     I EI+G  S+GK+ L +      Q        GG
Sbjct: 95  NGPECFTTADVAMDELLG-GGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGG 153

Query: 97  TCAFVDAEHALDSIYA----------RKLGVDLKNLLISQPDTGEQALEITDMLVR---- 142
            C ++  E  L +              KLG+   N+     +       I ++ +     
Sbjct: 154 KCVYITTEGDLPTQRLESMLSSRPAYEKLGITQSNIFTVSCNDLINQEHIINVQLPILLE 213

Query: 143 -SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
            S     +VI    +   R E++              + +   KL       
Sbjct: 214 RSKGSIKLVIIDSISHHLRVELQNKSFRES-QENKNYLDRMAEKLQILAHDY 264


>gi|11498064|ref|NP_069288.1| hypothetical protein AF0452 [Archaeoglobus fulgidus DSM 4304]
 gi|2650173|gb|AAB90781.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 443

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +++G  G D  LG GG  +G      GP   GKT L L   A     G    ++  E   
Sbjct: 240 IATGIDGFDELLG-GGIIRGTATAFVGPSGGGKTVLMLSAAANVAINGENVTYISFEEPR 298

Query: 108 DSI 110
             I
Sbjct: 299 QQI 301



 Score = 42.1 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 5/94 (5%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E V +G  G D     GGF +G+I+ I G   SGKTT     + +  +  G      + 
Sbjct: 1   MEAVKTGIEGFDDI--FGGFYRGQIILIAGNPGSGKTTFCAKFLYEGARRFGENGLYISI 58

Query: 105 HALDS---IYARKLGVDLKNLLISQPDTGEQALE 135
                    Y +KLG+D + L  +      + L 
Sbjct: 59  GESKEEFYEYMKKLGMDFEKLEKTGSFKYVEMLA 92


>gi|315453634|ref|YP_004073904.1| DNA repair protein RadA (ATP-dependant protease) [Helicobacter
           felis ATCC 49179]
 gi|315132686|emb|CBY83314.1| putative DNA repair protein RadA (ATP-dependant protease)
           [Helicobacter felis ATCC 49179]
          Length = 446

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 64/193 (33%), Gaps = 22/193 (11%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E I   SS    LDI LG GG   G +  I G    GK+TL L        TG +  +V 
Sbjct: 64  ESISTFSSTQKELDIVLG-GGIVPGGLYLIGGAPGVGKSTLLLKVAGGLASTGLSVLYVS 122

Query: 103 AEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
            E +   I  R  +L    + L +         L+     +      + VIDS+  L   
Sbjct: 123 GEESAGQIRLRADRLACVQEKLYLLNEID----LDTIKAHLLGTNYAVCVIDSIQTLYSS 178

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
           A        S        + +        +++ + I +FI     K G +        G 
Sbjct: 179 AVSSAPGSISQIREITFDLMR--------LAKQEQIAIFIIGHITKEGSI-------AGP 223

Query: 221 NALKFYSSVRLDI 233
             L+      L  
Sbjct: 224 RVLEHMVDAVLYF 236


>gi|171190286|gb|ACB42449.1| disrupted meiotic cDNA protein [Hordelymus europaeus]
 gi|171190288|gb|ACB42450.1| disrupted meiotic cDNA protein [Hordelymus europaeus]
 gi|171190290|gb|ACB42451.1| disrupted meiotic cDNA protein [Hordelymus europaeus]
 gi|171190292|gb|ACB42452.1| disrupted meiotic cDNA protein [Hordelymus europaeus]
 gi|171190296|gb|ACB42454.1| disrupted meiotic cDNA protein [Hordelymus europaeus]
 gi|171190298|gb|ACB42455.1| disrupted meiotic cDNA protein [Hordelymus europaeus]
          Length = 138

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 18/150 (12%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N++ ++  T E    +       +      ++++DSV AL          G S    + 
Sbjct: 1   DNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRSELAERQ 56

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR 234
           + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +R
Sbjct: 57  QKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           +           G Q   K+         +
Sbjct: 117 KGK---------GEQRVCKIFDAPNLPEGE 137


>gi|325142013|gb|EGC64445.1| DNA repair protein RadA [Neisseria meningitidis 961-5945]
 gi|325198001|gb|ADY93457.1| DNA repair protein RadA [Neisseria meningitidis G2136]
          Length = 459

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 56/143 (39%), Gaps = 4/143 (2%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +    +G   LD  LG GG   G ++ + G    GK+TL L TIA+  ++     +V  
Sbjct: 68  EVPRNPTGMGELDRVLG-GGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQS-RKVLYVSG 125

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E +   +  R     L+          E  +E     ++    +++VIDS+  +      
Sbjct: 126 EESAQQVALRAQ--RLELPTEGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQTMYSDQIT 183

Query: 164 EGDMGESLPGMQARLMSQALRKL 186
                 S     A  +++  +++
Sbjct: 184 SAPGSVSQVRECAAQLTRMAKQM 206


>gi|256374521|ref|YP_003098181.1| DNA repair protein RadA [Actinosynnema mirum DSM 43827]
 gi|255918824|gb|ACU34335.1| DNA repair protein RadA [Actinosynnema mirum DSM 43827]
          Length = 462

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 47/125 (37%), Gaps = 3/125 (2%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   LD  LG GG   G +V + G    GK+TL L    Q   T G C +V  E +   
Sbjct: 73  TGVGELDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLEVAHQWASTVGRCLYVTGEESAGQ 131

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +  R       NL        E  +      V +    ++++DSV  ++  +      G 
Sbjct: 132 VRLRA--DRTGNLHDEIYLAAESDISAVLGQVDAVKPSMMIVDSVQTMSSLSIDGMPGGV 189

Query: 170 SLPGM 174
           S    
Sbjct: 190 SQVRA 194


>gi|254281733|ref|ZP_04956701.1| DNA repair protein RadA [gamma proteobacterium NOR51-B]
 gi|219677936|gb|EED34285.1| DNA repair protein RadA [gamma proteobacterium NOR51-B]
          Length = 459

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 65/174 (37%), Gaps = 13/174 (7%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           A+ +L     +   +   SSG   LD  LG GG   G  + I G   +GK+TL L T+  
Sbjct: 62  AVQRLQDIDLV--ALPRFSSGFDELDRVLG-GGLVPGSAILIGGHPGAGKSTLLLQTLCH 118

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
             ++  +  +V  E +          V L     S     E  ++           +++V
Sbjct: 119 LARS-RSALYVTGEES--PQQIAMRAVRLGLPAESLQLMAETDIDAIMGAAEQHKPELLV 175

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           +DS+  +   AE+    G      +   M      LT    ++  +L+ +  + 
Sbjct: 176 VDSIQVVHS-AEVTSAPGSVSQVRECAAM------LTRLAKQTGTVLILVGHVT 222


>gi|307151597|ref|YP_003886981.1| putative circadian clock protein KaiC [Cyanothece sp. PCC 7822]
 gi|306981825|gb|ADN13706.1| putative circadian clock protein, KaiC [Cyanothece sp. PCC 7822]
          Length = 520

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 61/183 (33%), Gaps = 30/183 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       +SSG   LD   G GGF K  I+   G   +GKT L    + +  
Sbjct: 253 MRLTQRSSNV----RISSGVKTLDEMCG-GGFFKDSIILATGATGTGKTLLVSKFLEEGC 307

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
           + G        E +   +        +            LL S P++   E  L+I    
Sbjct: 308 RRGERAILFAYEESRAQLSRNAGSWGIDFEEMEKKGLLKLLCSYPESAGLEDHLQIIKSE 367

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 368 IAIFKPSRIAIDSLSALA-------------RGVTNNAFRQFVIGVTGYAKQEEITGFFT 414

Query: 201 NQM 203
           N  
Sbjct: 415 NTT 417



 Score = 39.1 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ----SQKTGGTC 98
           +G+  + +   G D  +  GG P GR   + G   +GKT LA+  +          G   
Sbjct: 17  KGVRKIRTMIEGFDE-ISHGGLPVGRTTLVSGTSGTGKTLLAIQFLYHGIKYFDYPGLFV 75

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLIS 125
            F ++ + +    A   G DL  L+  
Sbjct: 76  TFEESPNDIIQN-AHSFGWDLNQLIDE 101


>gi|121634576|ref|YP_974821.1| DNA repair protein RadA [Neisseria meningitidis FAM18]
 gi|120866282|emb|CAM10023.1| putative DNA repair protein [Neisseria meningitidis FAM18]
          Length = 464

 Score = 45.6 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 4/146 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
               +    +G   LD  LG GG   G ++ + G    GK+TL L TIA+  ++     +
Sbjct: 70  TATEVPRNPTGMGELDRVLG-GGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQS-RKVLY 127

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E +   +  R     L+          E  +E     ++    +++VIDS+  +   
Sbjct: 128 VSGEESAQQVALRAQ--RLELPTEGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQTMYSD 185

Query: 161 AEIEGDMGESLPGMQARLMSQALRKL 186
                    S     A  +++  +++
Sbjct: 186 QITSAPGSVSQVRECAAQLTRMAKQM 211


>gi|269214008|ref|ZP_06158298.1| DNA repair protein RadA [Neisseria cinerea ATCC 14685]
 gi|269144791|gb|EEZ71209.1| DNA repair protein RadA [Neisseria cinerea ATCC 14685]
          Length = 464

 Score = 45.6 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 4/146 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
               +    +G   LD  LG GG   G ++ + G    GK+TL L TIA+  ++     +
Sbjct: 70  TATEVPRNPTGMGELDRVLG-GGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQS-RKVLY 127

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E +   +  R     L+          E  +E     ++    +++VIDS+  +   
Sbjct: 128 VSGEESAQQVALRAQ--RLELPTEGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQTMYSD 185

Query: 161 AEIEGDMGESLPGMQARLMSQALRKL 186
                    S     A  +++  +++
Sbjct: 186 QITSAPGSVSQVRECAAQLTRMAKQM 211


>gi|55379512|ref|YP_137362.1| hypothetical protein rrnAC2917 [Haloarcula marismortui ATCC 43049]
 gi|55232237|gb|AAV47656.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 237

 Score = 45.6 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 68/206 (33%), Gaps = 9/206 (4%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +SSG  G D  +  GG    R+  + GP  SGKTT     I Q  K G TC +V     
Sbjct: 11  RLSSGVPGFDELI-EGGLLPNRLYVVSGPPGSGKTTFCSQFITQGVKEGETCLYVTMHET 69

Query: 107 LDSIYARKLGVDLK---NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
              +     G D      +            E     +     +  + + + A   + +I
Sbjct: 70  KTELMQDMAGYDFGFDRAMQSDAIQFLNLVTESGKRTITQFGNEGGLTNRLVAYIRQNDI 129

Query: 164 EGDMGESLPGMQARLMSQALRKLTS---SISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
           +  + +S   +    M+    ++T    ++ ++    + I++M               G 
Sbjct: 130 QRVVIDSTM-LLQHFMADVEDEITGFLSALKQTDATTLLISEMT-DPSSYSDEHYLAHGV 187

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSIT 246
                +       R V  IK + +  
Sbjct: 188 VFFHNFLENGSMTRGVQVIKMRGTAI 213


>gi|310644234|ref|YP_003948993.1| DNA repair protein rada [Paenibacillus polymyxa SC2]
 gi|309249185|gb|ADO58752.1| DNA repair protein radA [Paenibacillus polymyxa SC2]
          Length = 457

 Score = 45.2 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 54/142 (38%), Gaps = 7/142 (4%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            + +G   L+  LG GG   G +V + G    GK+TL L T  +   TG    +V  E +
Sbjct: 72  RILTGIGELNRVLG-GGVVPGSLVLVGGDPGIGKSTLMLQTSNELALTGLKVLYVSGEES 130

Query: 107 LDS--IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           +    + A +LG    +L +         LE  +  V S   + +VIDS+  +       
Sbjct: 131 VRQTKLRADRLGALSPSLYVLCETN----LETIEEAVDSLKPEFLVIDSIQTVYLPEVTS 186

Query: 165 GDMGESLPGMQARLMSQALRKL 186
                +          +  + L
Sbjct: 187 APGSVAQVRECTSRFMRIAKGL 208


>gi|188577453|ref|YP_001914382.1| DNA repair protein RadA [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521905|gb|ACD59850.1| DNA repair protein RadA [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 464

 Score = 45.2 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 54/141 (38%), Gaps = 8/141 (5%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+G    D  LG GG  +G +V I G    GK+TL L  +A    T     +V  E +
Sbjct: 80  RVSTGIGEFDRVLG-GGLVEGAVVLIGGDPGIGKSTLLLQALASMAST-LPVLYVTGEES 137

Query: 107 LDSIYARKLGVD--LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           L  +  R + +D  L  L        E  L+   +        +IV DSV  L   +   
Sbjct: 138 LAQVAGRAVRLDLPLDGLNALSETGIEHILQHASV----ARPRLIVADSVQTLWTESLTA 193

Query: 165 GDMGESLPGMQARLMSQALRK 185
                S     A  + +  ++
Sbjct: 194 APGSVSQVRESAARLVRYAKE 214


>gi|84623187|ref|YP_450559.1| DNA repair protein RadA [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|121632079|ref|YP_001001441.1| DNA repair protein RadA [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84367127|dbj|BAE68285.1| DNA repair protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|116246993|gb|ABJ89919.1| DNA repair protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 463

 Score = 45.2 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 54/141 (38%), Gaps = 8/141 (5%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+G    D  LG GG  +G +V I G    GK+TL L  +A    T     +V  E +
Sbjct: 79  RVSTGIGEFDRVLG-GGLVEGAVVLIGGDPGIGKSTLLLQALASMAST-LPVLYVTGEES 136

Query: 107 LDSIYARKLGVD--LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           L  +  R + +D  L  L        E  L+   +        +IV DSV  L   +   
Sbjct: 137 LAQVAGRAVRLDLPLDGLNALSETGIEHILQHASV----ARPRLIVADSVQTLWTESLTA 192

Query: 165 GDMGESLPGMQARLMSQALRK 185
                S     A  + +  ++
Sbjct: 193 APGSVSQVRESAARLVRYAKE 213


>gi|255065204|ref|ZP_05317059.1| DNA repair protein RadA [Neisseria sicca ATCC 29256]
 gi|255050625|gb|EET46089.1| DNA repair protein RadA [Neisseria sicca ATCC 29256]
          Length = 459

 Score = 45.2 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 4/146 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
               +    +G   LD  LG GG   G ++ + G    GK+TL L TIA+  ++     +
Sbjct: 65  TATEVPRNPTGMGELDRVLG-GGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQS-RKVLY 122

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E +   +  R     L+          E  +E     ++    +++VIDS+  +   
Sbjct: 123 VSGEESAQQVALRAQ--RLELPTEGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQTMYSD 180

Query: 161 AEIEGDMGESLPGMQARLMSQALRKL 186
                    S     A  +++  +++
Sbjct: 181 QITSAPGSVSQVRECAAQLTRMAKQM 206


>gi|313668739|ref|YP_004049023.1| DNA repair protein [Neisseria lactamica ST-640]
 gi|313006201|emb|CBN87663.1| putative DNA repair protein [Neisseria lactamica 020-06]
          Length = 464

 Score = 45.2 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 4/146 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
               +    +G   LD  LG GG   G ++ + G    GK+TL L TIA+  ++     +
Sbjct: 70  TATEVPRNPTGMGELDRVLG-GGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQS-RKVLY 127

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E +   +  R     L+          E  +E     ++    +++VIDS+  +   
Sbjct: 128 VSGEESAQQVALRAQ--RLELPTEGVNLLAEIRMEAIQTALKQHRPEVVVIDSIQTMYSD 185

Query: 161 AEIEGDMGESLPGMQARLMSQALRKL 186
                    S     A  +++  +++
Sbjct: 186 QITSAPGSVSQVRECAAQLTRMAKQM 211


>gi|186473596|ref|YP_001860938.1| putative circadian clock protein, KaiC [Burkholderia phymatum
           STM815]
 gi|184195928|gb|ACC73892.1| putative circadian clock protein, KaiC [Burkholderia phymatum
           STM815]
          Length = 479

 Score = 45.2 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 15/171 (8%)

Query: 35  LGSQGSIFEGIEV-VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ--S 91
           L S  +    +   +++G  GLD  LG GG P   +  + GP  SGKTT  L  + +   
Sbjct: 229 LASPSAAERPVTARLTTGVAGLDERLG-GGLPHNSVSVLVGPAGSGKTTFGLTFLKEATR 287

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           ++ G    F +    L    A  LG+DL+ L  S       AL +    +    +D +  
Sbjct: 288 ERPGVHFGFYETPERLC-TKAHALGIDLQGLAAS------GALTLLWRPLTENLLDKLAY 340

Query: 152 DSVAAL-TPRAE---IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
           D + A+   RAE   I+G  G     +    + +    LT+ +       V
Sbjct: 341 DLLRAVRETRAERLFIDGLTGFERATVDPHRVVEFFSALTNELRAVGVTTV 391


>gi|104781399|ref|YP_607897.1| signal transduction protein [Pseudomonas entomophila L48]
 gi|95110386|emb|CAK15094.1| putative signal transduction protein [Pseudomonas entomophila L48]
          Length = 481

 Score = 45.2 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 41/136 (30%), Gaps = 15/136 (11%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + E ++ + +G  GLD  L  GG   G    + G   SGKT LA        + GG    
Sbjct: 1   MVEQLKRLPTGIPGLDALL-KGGLVAGASYIVQGHPGSGKTILANQLACNHVRDGGRVLV 59

Query: 101 VDAEHALDSIYARKLGVDL--------KNLLISQPDTGEQA------LEITDMLVRSGAV 146
                       + L              +         +       + +    +     
Sbjct: 60  ATLLSESHERLFQYLSTLAFFDPSQVGDAIQFVSAFDTLEQDGLDAVVRLLRQEIARQQA 119

Query: 147 DIIVIDSVAALTPRAE 162
            ++++D +     RAE
Sbjct: 120 SLLIVDGLLNARSRAE 135



 Score = 39.8 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
           +  V++G   LD+ LG GG  +G +  + GP   GKT L +
Sbjct: 240 VNQVTTGVPDLDMMLG-GGLAQGSVSLLMGPSGVGKTALGV 279


>gi|222056868|ref|YP_002539230.1| Non-specific serine/threonine protein kinase [Geobacter sp. FRC-32]
 gi|221566157|gb|ACM22129.1| Non-specific serine/threonine protein kinase [Geobacter sp. FRC-32]
          Length = 488

 Score = 45.2 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           + +G  GLD  L  GG  +G++  + G   +GKTT +L  I +    G  C ++    A
Sbjct: 10  IPTGVPGLDDIL-RGGLTEGKMYLLSGSPGTGKTTFSLQFITEGISRGERCLYITVGSA 67



 Score = 39.4 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 62/194 (31%), Gaps = 7/194 (3%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV--DA 103
           E V SG+  LD  L  GG  +G    I G   +GKTT+A      + + G   A    D 
Sbjct: 250 EQVDSGNKNLD-LLFDGGLDRGSTTVIIGASGTGKTTIANLYAVAAARRGEHVAVYLFDE 308

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
                   A  LG+ + +L+ S   T  Q         R     +++ +          I
Sbjct: 309 TDESYRERAEGLGLGVDSLVNSGLMTLRQI--NVAEFSRGEFTAMLIREVEENSAQIVVI 366

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           +   G +      + +   L +L + + +     +   +     G +    E        
Sbjct: 367 DTLSGYASAMPDEKYLIIQLHELLTYLCQKGVTTILTVEQHGLFGSLTTEVENV--SYLA 424

Query: 224 KFYSSVRLDIRRVG 237
                +R    R  
Sbjct: 425 DSILLIRFFELRGE 438


>gi|11991543|gb|AAG42287.1| RAD5113 [Mus musculus]
          Length = 329

 Score = 45.2 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 64/214 (29%), Gaps = 31/214 (14%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK----- 93
             +     ++S+G   LD  L   G   G + EI G   SGKT + L   A         
Sbjct: 73  EELKTSTAILSTGIGSLDKLL-DAGLYTGEVTEIVGGPGSGKTQVCLCVAANVAHSLQQN 131

Query: 94  ------TGGTCAF----------VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
                  GG  A            D E    ++   ++        +       +     
Sbjct: 132 VLYVDSNGGMTASRLLQLLQARTQDEEKQASALQRIQVVRSXDIFRMLDMLQDLRGTIAQ 191

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
                SGAV ++++DSV A      +   +          LM Q  R+L          +
Sbjct: 192 QEATSSGAVKVVIVDSVTA------VAAPLLGGQQREGLALMMQLARELKILARDLGVAV 245

Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
           V  N +        G       G +  F  S R+
Sbjct: 246 VVTNHLTRDWD---GRRFKPALGRSWSFVPSTRI 276


>gi|297272378|ref|XP_001111649.2| PREDICTED: DNA repair protein RAD51 homolog 4-like [Macaca mulatta]
          Length = 431

 Score = 45.2 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 61/208 (29%), Gaps = 19/208 (9%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGT 97
             +     ++S+G   LD  L   G   G + EI G   SGKT + L   A         
Sbjct: 73  EELKTSTAILSTGIGSLDKLL-DAGLYTGEVTEIVGGPGSGKTQVCLCVAANVAHGLQQN 131

Query: 98  CAFVDAEHALDSIY-----------ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
             +VD+   L +               +    L+ + +       Q L++   L  + A 
Sbjct: 132 ILYVDSNGGLTASRLLQLLQTKTQDEEEQAEALQRIQVVHAFDIFQMLDVLQELRGTVAQ 191

Query: 147 DIIVIDSVA---ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
            +           +     +   +          LM Q  R+L +        +V  N +
Sbjct: 192 QVTGSSGTMKVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLARDLGMAVVVTNHI 251

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRL 231
                           G +  F  S R+
Sbjct: 252 TRDRDSGRL---KPALGRSWSFVPSTRI 276


>gi|154249060|ref|YP_001409885.1| DNA repair protein RadA [Fervidobacterium nodosum Rt17-B1]
 gi|154152996|gb|ABS60228.1| DNA repair protein RadA [Fervidobacterium nodosum Rt17-B1]
          Length = 465

 Score = 45.2 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 10/117 (8%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI---AQSQKTGGTCAFVD 102
           E + +G   +D  L  GG  KG+++ + G    GK+T+AL      A++        ++ 
Sbjct: 74  ERIKTGINSIDELLS-GGLIKGQVILLGGEPGVGKSTIALQICDSIARNSNNDKRIYYIS 132

Query: 103 AEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            E ++  +   A++LG++ + LLIS     E  L      +      +IV+DS+  L
Sbjct: 133 GEESVGQVGLRAKRLGINNEKLLISSETQIEDILN----EIDPNKAQLIVVDSIQTL 185


>gi|148670703|gb|EDL02650.1| RAD51-like 1 (S. cerevisiae), isoform CRA_d [Mus musculus]
          Length = 174

 Score = 45.2 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 7/84 (8%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI----- 88
           +L ++ S       +S+    LD AL  GG P G + EI GP   GKT   +        
Sbjct: 69  ELKTRRSAHLSPAFLSTTLCALDEAL-HGGVPCGSLTEITGPPGCGKTQFCIMMSVLATL 127

Query: 89  -AQSQKTGGTCAFVDAEHALDSIY 111
                   G   ++D E A  +  
Sbjct: 128 PTSLGGLEGAVVYIDTESAFTAER 151


>gi|261363743|ref|ZP_05976626.1| DNA repair protein RadA [Neisseria mucosa ATCC 25996]
 gi|288568316|gb|EFC89876.1| DNA repair protein RadA [Neisseria mucosa ATCC 25996]
          Length = 459

 Score = 45.2 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 4/146 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
               +    +G   LD  LG GG   G ++ + G    GK+TL L TIA+  ++     +
Sbjct: 65  TATEVPRNPTGMGELDRVLG-GGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQS-RKVLY 122

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E +   +  R     L+          E  +E     ++    +++VIDS+  +   
Sbjct: 123 VSGEESAQQVALRAQ--RLELPTEGVNLLAEIRMEAIQAALKQHQPEVVVIDSIQTMYSD 180

Query: 161 AEIEGDMGESLPGMQARLMSQALRKL 186
                    S     A  +++  +++
Sbjct: 181 QITSAPGSVSQVRECAAQLTRMAKQM 206


>gi|294669330|ref|ZP_06734409.1| DNA repair protein RadA [Neisseria elongata subsp. glycolytica ATCC
           29315]
 gi|291308740|gb|EFE49983.1| DNA repair protein RadA [Neisseria elongata subsp. glycolytica ATCC
           29315]
          Length = 461

 Score = 45.2 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 4/146 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
               +    +G   LD  LG GG   G ++ + G    GK+TL L TIA+  ++     +
Sbjct: 65  TATEVPRNPTGMGELDRVLG-GGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQS-RKVLY 122

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E +   +  R     L+          E  +E     ++    +++VIDS+  +   
Sbjct: 123 VSGEESAQQVALRAQ--RLELPTEGVNLLAEIRMEAIQAALKQHQPEVVVIDSIQTMYSD 180

Query: 161 AEIEGDMGESLPGMQARLMSQALRKL 186
                    S     A  +++  +++
Sbjct: 181 QITSAPGSVSQVRECAAQLTRMAKQM 206


>gi|322497213|emb|CBZ32286.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 521

 Score = 45.2 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 60/181 (33%), Gaps = 24/181 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS------QKTGGTCAFV 101
           + +G   LD AL +GG  +G + E+ G   +GKTTLA               T   C ++
Sbjct: 148 LPTGLRSLDAAL-LGGLRRGWVTELTGLPGTGKTTLAAEWCRSCLRHARSCGTAHDCVWL 206

Query: 102 DAEHALDSIY---------ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
            +  A+ S           A +L   +  + ++   + +   ++      +      +  
Sbjct: 207 QSGSAVHSAVLATAHEEADATELSSLVDAVHVACLSSLDGLQQLLARWQGTEGSASPL-- 264

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQA------LRKLTSSISRSKCILVFINQMRMK 206
           S   L     I   M  S        + +       L+ L       +  ++ I Q +  
Sbjct: 265 STVGLIVLDSITDLMRRSFRCEDDDALQRHEALATTLQSLKRLAEEQRVAVLVITQQQRH 324

Query: 207 I 207
            
Sbjct: 325 P 325


>gi|166713074|ref|ZP_02244281.1| DNA repair protein RadA [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 464

 Score = 45.2 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 54/141 (38%), Gaps = 8/141 (5%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+G    D  LG GG  +G +V I G    GK+TL L  +A    T     +V  E +
Sbjct: 80  RVSTGIGEFDRVLG-GGLVEGAVVLIGGDPGIGKSTLLLQALASMAST-LPVLYVTGEES 137

Query: 107 LDSIYARKLGVD--LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           L  +  R + +D  L  L        E  L+   +        +IV DSV  L   +   
Sbjct: 138 LAQVAGRAVRLDLPLDGLNALAETGIEHILQHASV----ARPRLIVADSVQTLWTESLTA 193

Query: 165 GDMGESLPGMQARLMSQALRK 185
                S     A  + +  ++
Sbjct: 194 APGSVSQVRESAARLVRYAKE 214


>gi|18312135|ref|NP_558802.1| hypothetical protein PAE0729 [Pyrobaculum aerophilum str. IM2]
 gi|18159568|gb|AAL62984.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
          Length = 258

 Score = 45.2 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV---D 102
           E V +G  GLD  +G GGF +GR   I G   + KT  AL  + Q     G        D
Sbjct: 9   ETVPTGIEGLDTIIG-GGFIRGRTYLISGETGTAKTLTALTFLIQGALKYGEPGIYISVD 67

Query: 103 AEHALDSIYARKLGVDLKNLL 123
             +      AR+ G D+++L 
Sbjct: 68  ETYEQFVEGARRFGWDIEDLR 88


>gi|317130512|ref|YP_004096794.1| circadian clock protein, KaiC [Bacillus cellulosilyticus DSM 2522]
 gi|315475460|gb|ADU32063.1| putative circadian clock protein, KaiC [Bacillus cellulosilyticus
           DSM 2522]
          Length = 469

 Score = 45.2 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 63/173 (36%), Gaps = 6/173 (3%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           ++V++G  GLD  L  GG PKG  + + G   +GKTT+ +  +      G    ++    
Sbjct: 3   QLVTTGINGLDSLLN-GGIPKGNGIIVEGAPGTGKTTMGIQFLYHGALNGENGLYL---- 57

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
                +  ++  D+ N   +  +  +Q L    +L     ++ + I S        E   
Sbjct: 58  -SFQEFPDQIYSDMSNFGFNIKELEKQKLLKIVLLSPEVLLEEMFIPSGLFEELVEEYGC 116

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
                      + + + + KL   I   K IL       + I   + + +   
Sbjct: 117 KRIVIDSLSIFKHLEEDVHKLRKLIYSFKNILGKYRLTSLIISERYTNNQELP 169


>gi|146079674|ref|XP_001463826.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134067914|emb|CAM66195.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 518

 Score = 45.2 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 25/181 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS------QKTGGTCAFV 101
           + +G   LD AL +GG  +G + E+ G   +GKTTLA               T   C ++
Sbjct: 146 LPTGLRSLDAAL-LGGLRRGWVTELTGLPGTGKTTLAAEWCRSCLRHARSCGTAHDCVWL 204

Query: 102 DAEHALDSIY--------ARKLGVDLKNLLISQPDTGEQALEITDMLVRSG-------AV 146
            +  A+ S          A +L   +  + ++   + +   ++      +         V
Sbjct: 205 QSGSAVHSAVLATAQEADATELSSLVDAVHVACLSSLDGLQQLLARWQGTEGSASPLSTV 264

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
            +IV+DS+  L  R+       +     +   ++  L+ L       +  ++ I Q +  
Sbjct: 265 GLIVLDSITDLMRRSF---RFEDDDALQRHEALATTLQSLKRLAEEQRVAVLVITQQQRH 321

Query: 207 I 207
            
Sbjct: 322 P 322


>gi|257052465|ref|YP_003130298.1| putative circadian clock protein, KaiC [Halorhabdus utahensis DSM
           12940]
 gi|256691228|gb|ACV11565.1| putative circadian clock protein, KaiC [Halorhabdus utahensis DSM
           12940]
          Length = 402

 Score = 45.2 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 50/135 (37%), Gaps = 15/135 (11%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
              S    I  +  G  GLD  +  GG P   ++ + G   +GKTT  L  +    + G 
Sbjct: 165 DDDSFESEIPRIDLGIEGLDEMI-QGGVPSRHLMVVIGSPGTGKTTFGLQFLHHGLQQGE 223

Query: 97  TCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTGEQALEIT----DMLVR 142
              F+  E + +SI         +           ++   P     +LE        LVR
Sbjct: 224 NAVFITLEQSRESILDTADERGWEFDRYEREDRLAIVDLDPVEMANSLENIRGEFPQLVR 283

Query: 143 SGAVDIIVIDSVAAL 157
               D +V+DSV+ L
Sbjct: 284 EFGADRLVLDSVSLL 298


>gi|261409550|ref|YP_003245791.1| DNA repair protein RadA [Paenibacillus sp. Y412MC10]
 gi|329929235|ref|ZP_08282994.1| DNA repair protein RadA [Paenibacillus sp. HGF5]
 gi|261286013|gb|ACX67984.1| DNA repair protein RadA [Paenibacillus sp. Y412MC10]
 gi|328936794|gb|EGG33233.1| DNA repair protein RadA [Paenibacillus sp. HGF5]
          Length = 455

 Score = 45.2 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 54/147 (36%), Gaps = 8/147 (5%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
             + +G   L+  LG GG   G +V + G    GK+TL L    +  + G    ++  E 
Sbjct: 69  PRIQTGIAELNRVLG-GGLVPGSLVLVGGDPGIGKSTLLLQASNRLAQNGIRVLYISGEE 127

Query: 106 ALDS--IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           ++    + A +LG     L +         LE  +  + +     +VIDS+  +    E+
Sbjct: 128 SVRQTKLRADRLGALSPELFVLCETN----LESIEEAIENVQPGFVVIDSIQTVY-LPEV 182

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSI 190
               G      +       L K+    
Sbjct: 183 TSAPGSVSQVRECTARFMRLAKVKGIA 209


>gi|330953361|gb|EGH53621.1| KaiC [Pseudomonas syringae Cit 7]
          Length = 482

 Score = 45.2 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC--AFVDAEH 105
           +SSG   LD  LG GG   G    I GP  +GK+ ++L    Q+   G        D E 
Sbjct: 236 LSSGIQELDNLLG-GGIEGGSSTLILGPAGTGKSLISLVFAVQAVARGERVGLFIFDEEM 294

Query: 106 ALDSIYARKLGVDLKNL 122
            L      KLG+DL+ L
Sbjct: 295 GLLFERMLKLGIDLRAL 311


>gi|170044836|ref|XP_001850037.1| DNA-repair protein XRCC3 [Culex quinquefasciatus]
 gi|167867962|gb|EDS31345.1| DNA-repair protein XRCC3 [Culex quinquefasciatus]
          Length = 281

 Score = 45.2 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 74/220 (33%), Gaps = 45/220 (20%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---GGTCAFVDAEHALDSI 110
            LD  L  GG     +VEI G   SGKT LALH     Q+         ++  EH   S 
Sbjct: 36  SLDRLLCAGGISARGVVEIAGDAGSGKTQLALHLALTCQQQCPERRGVVYISTEHPFPSK 95

Query: 111 YARKLG----------------------------VDLKNLLISQPDTGEQALEIT----- 137
              ++                             V L  +          ALE       
Sbjct: 96  RLVQMEQTLRNSSGVGHEVGKYSDNIFVEHLNNPVGLDLIYFEDVLINNSALEQCITDRL 155

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
            +L+ +  + ++VIDS+AA+    E   +  ES          + +  L +   R   + 
Sbjct: 156 PVLLENNPIRLLVIDSIAAVYADEEDYVERAES--------FRRLVHSLHALQERFDFVT 207

Query: 198 VFINQMRMKIGVMFGSPETTTG-GNALKFYSSVRLDIRRV 236
           V  NQ+R  +    G  +     G A       R+ +RR+
Sbjct: 208 VCTNQVRAVVDDYDGEEKVIPALGLAWGSLVHTRIQLRRI 247


>gi|325921427|ref|ZP_08183283.1| DNA repair protein RadA [Xanthomonas gardneri ATCC 19865]
 gi|325548069|gb|EGD19067.1| DNA repair protein RadA [Xanthomonas gardneri ATCC 19865]
          Length = 463

 Score = 45.2 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 53/140 (37%), Gaps = 4/140 (2%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
             VS+G    D  LG GG  +G +V I G    GK+TL L  +A    T     +V  E 
Sbjct: 78  SRVSTGIGEFDRVLG-GGLVEGAVVLIGGDPGIGKSTLLLQALASMAST-LPVLYVTGEE 135

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +L  +  R + +DL   L       E  +E            +IV DSV  L   +    
Sbjct: 136 SLAQVAGRAVRLDLP--LEGLNALAETGIENILQHASVARPKLIVADSVQTLWTESLTAA 193

Query: 166 DMGESLPGMQARLMSQALRK 185
               S     A  + +  ++
Sbjct: 194 PGSVSQVRESAARLVRYAKE 213


>gi|260950115|ref|XP_002619354.1| hypothetical protein CLUG_00513 [Clavispora lusitaniae ATCC 42720]
 gi|238846926|gb|EEQ36390.1| hypothetical protein CLUG_00513 [Clavispora lusitaniae ATCC 42720]
          Length = 211

 Score = 45.2 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 14/142 (9%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           K +I     +  + +    VS+G   LD+ L   G   G + E++G    GK+ L L   
Sbjct: 70  KESIRP--QKKRLSQNTSAVSTGLSQLDMLL-HNGIQVGSVTEVFGASGCGKSQLLLQIA 126

Query: 89  AQSQKT---------GGTCAFVDAEHALDSIYARK--LGVDLKNLLISQPDTGEQALEIT 137
            ++Q            G    +  E AL++   +   +   L + L +   T    +E  
Sbjct: 127 LEAQGKRKEENTDNFRGRSIIISTESALETRRLQDMCIHRGLPDALDNISYTYCHDVENQ 186

Query: 138 DMLVRSGAVDIIVIDSVAALTP 159
           D ++ +    ++   +   L  
Sbjct: 187 DHIIFTQLPAMLGWSAGPRLQS 208


>gi|295837243|ref|ZP_06824176.1| DNA repair protein RadA [Streptomyces sp. SPB74]
 gi|295826417|gb|EFG64834.1| DNA repair protein RadA [Streptomyces sp. SPB74]
          Length = 397

 Score = 45.2 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 7/130 (5%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G +V + G    GK+TL L   A++   G    +V  E +  
Sbjct: 74  STGVPELDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLDVAAKAAGPGRRTLYVTGEESAS 132

Query: 109 SIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
            +  R  ++G     L ++        L      + +    ++V+DSV  +         
Sbjct: 133 QVRLRADRIGALDDELYLAAETD----LAAVLGHLDAVKPALLVVDSVQTVASPEIDGAP 188

Query: 167 MGESLPGMQA 176
            G +     A
Sbjct: 189 GGMAQVREVA 198


>gi|254430289|ref|ZP_05043992.1| circadian clock protein KaiC [Cyanobium sp. PCC 7001]
 gi|197624742|gb|EDY37301.1| circadian clock protein KaiC [Cyanobium sp. PCC 7001]
          Length = 512

 Score = 45.2 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 61/181 (33%), Gaps = 30/181 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       +SSG   LD   G GGF K  I+   G   +GKT L    +  + 
Sbjct: 248 MRLTQRSSNI----RISSGVPKLDEMCG-GGFFKDSIILATGATGTGKTLLVSKFVEDAC 302

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
           ++         E +   +        +            ++ + P++   E  L+I    
Sbjct: 303 RSKQRAILFAYEESRAQLLRNATSWGIDFEQMEQDGLLKIICAYPESTGLEDHLQIIKTE 362

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       + IDS++AL          G S          Q +  +T    + +    F 
Sbjct: 363 ISQFKPSRMAIDSLSALA--------RGVSH-----NAFRQFVIGVTGYAKQEEIAGFFT 409

Query: 201 N 201
           N
Sbjct: 410 N 410



 Score = 39.4 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 37 SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
          S  +    ++ + +G  G D     GG P GR   I G   +GKT L+L+ +    + 
Sbjct: 6  SPDTPLMQVQKLPTGIEGFDDVC-HGGLPIGRSTLISGTSGTGKTVLSLNFLYNGIRQ 62


>gi|294793816|ref|ZP_06758953.1| DNA repair protein RadA [Veillonella sp. 3_1_44]
 gi|294455386|gb|EFG23758.1| DNA repair protein RadA [Veillonella sp. 3_1_44]
          Length = 457

 Score = 45.2 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 7/144 (4%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  VS+    +D  LG GG   G ++ + G    GK+TL L    +   T G   +   
Sbjct: 68  SIARVSTTFGEIDRVLG-GGIVPGALMLLGGDPGIGKSTLLLQVSQKVADTVGAVLYASG 126

Query: 104 EHALDS--IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           E +     + A +L ++ + L +      +  LE  + +  S    ++V DS+  +    
Sbjct: 127 EESQLQLKLRAERLHINSERLQVIADTDLDHILEQAEAMTPS----LLVTDSIQTMYTGD 182

Query: 162 EIEGDMGESLPGMQARLMSQALRK 185
                   S        + +  ++
Sbjct: 183 IDAAPGSVSQVRECTSRLLRFCKE 206


>gi|315230128|ref|YP_004070564.1| circadian clock KaiC-like protein [Thermococcus barophilus MP]
 gi|315183156|gb|ADT83341.1| circadian clock KaiC-like protein [Thermococcus barophilus MP]
          Length = 231

 Score = 45.2 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 3/81 (3%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+G  GLD  L  GG   GR   + G   SGKTTL +H + +  K G    ++  E  
Sbjct: 3   RISTGVKGLDKMLN-GGLIPGRAYLVKGGPGSGKTTLCIHFLMEGVKRGEKVLYITLEEP 61

Query: 107 LD--SIYARKLGVDLKNLLIS 125
           +D      R++G D+ N L  
Sbjct: 62  IDILKEDMREMGFDVDNPLFV 82


>gi|325924806|ref|ZP_08186241.1| DNA repair protein RadA [Xanthomonas perforans 91-118]
 gi|325544736|gb|EGD16084.1| DNA repair protein RadA [Xanthomonas perforans 91-118]
          Length = 463

 Score = 45.2 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 4/139 (2%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+G    D  LG GG  +G +V I G    GK+TL L  +A    T     +V  E +
Sbjct: 79  RVSTGIGEFDRVLG-GGLVEGAVVLIGGDPGIGKSTLLLQALASMAST-LPVLYVTGEES 136

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           L  +  R + +DL   L       E  +E            +IV DSV  L   +     
Sbjct: 137 LAQVAGRAVRLDLP--LEGLNALAETGIENILQHASVARPKLIVADSVQTLWTESLTAAP 194

Query: 167 MGESLPGMQARLMSQALRK 185
              S     A  + +  ++
Sbjct: 195 GSVSQVRESAARLVRYAKE 213


>gi|289662734|ref|ZP_06484315.1| DNA repair protein RadA [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289670389|ref|ZP_06491464.1| DNA repair protein RadA [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 463

 Score = 45.2 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 4/139 (2%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+G    D  LG GG  +G +V I G    GK+TL L  +A    T     +V  E +
Sbjct: 79  RVSTGIGEFDRVLG-GGLVEGAVVLIGGDPGIGKSTLLLQALASMAST-LPVLYVTGEES 136

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           L  +  R + +DL   L       E  +E            +IV DSV  L   +     
Sbjct: 137 LAQVAGRAVRLDLP--LEGLNALAETGIENILQHASVARPKLIVADSVQTLWTESLTAAP 194

Query: 167 MGESLPGMQARLMSQALRK 185
              S     A  + +  ++
Sbjct: 195 GSVSQVRESAARLVRYAKE 213


>gi|288930681|ref|YP_003434741.1| hypothetical protein Ferp_0285 [Ferroglobus placidus DSM 10642]
 gi|288892929|gb|ADC64466.1| conserved hypothetical protein [Ferroglobus placidus DSM 10642]
          Length = 231

 Score = 45.2 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           +E +S+G L LD  LG GGFP G  + +     +G      H +A+  K G    ++ 
Sbjct: 1   MERLSTGILSLDSQLG-GGFPAGSFIVLLEDPGAGADYFTYHFVAEGLKRGEKALYIS 57


>gi|109948091|ref|YP_665319.1| hypothetical protein Hac_1611 [Helicobacter acinonychis str.
           Sheeba]
 gi|109715312|emb|CAK00320.1| CUP0976-like hypothetical protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 383

 Score = 45.2 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 68/199 (34%), Gaps = 20/199 (10%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF-- 100
             IE + +G   LD  L  GGF  G++V + G   +GKT L +  + Q+ +T     F  
Sbjct: 145 PAIEKIPTGLRFLDD-LTEGGFEVGQMVLLSGDPEAGKTLLGVQVLVQAMQTSKVTYFGF 203

Query: 101 -VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
                  ++++  +   +  +N  I         L      +      + +IDS      
Sbjct: 204 EFSVRKHMETLKKQGFQIHGRNYFIDDQSYEMNDLIAQIRSLTKEGHKLFLIDSQM---- 259

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
                  +   L        +     L+    R + +++FI      I        T +G
Sbjct: 260 ------KIQAPLLRTAEEAETIKFTSLSELARRLQVVILFI------IQNSKTDNYTPSG 307

Query: 220 GNALKFYSSVRLDIRRVGS 238
                  + V + + R+ +
Sbjct: 308 SRKGGHEAHVMIRLERLKN 326


>gi|188992570|ref|YP_001904580.1| DNA repair protein RadA [Xanthomonas campestris pv. campestris str.
           B100]
 gi|21112203|gb|AAM40462.1| DNA repair protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66574715|gb|AAY50125.1| DNA repair protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167734330|emb|CAP52540.1| DNA repair protein [Xanthomonas campestris pv. campestris]
          Length = 463

 Score = 45.2 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 4/139 (2%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+G    D  LG GG  +G +V I G    GK+TL L  +A    T     +V  E +
Sbjct: 79  RVSTGIGEFDRVLG-GGLVEGAVVLIGGDPGIGKSTLLLQALASMAST-LPVLYVTGEES 136

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           L  +  R + +DL   L       E  +E            +IV DSV  L   +     
Sbjct: 137 LAQVAGRAVRLDLP--LEGLNALAETGIENILQHASVARPKLIVADSVQTLWTESLTAAP 194

Query: 167 MGESLPGMQARLMSQALRK 185
              S     A  + +  ++
Sbjct: 195 GSVSQVRESAARLVRYAKE 213


>gi|77747789|ref|NP_636538.2| DNA repair protein RadA [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|77761273|ref|YP_244145.2| DNA repair protein RadA [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 464

 Score = 45.2 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 4/139 (2%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+G    D  LG GG  +G +V I G    GK+TL L  +A    T     +V  E +
Sbjct: 80  RVSTGIGEFDRVLG-GGLVEGAVVLIGGDPGIGKSTLLLQALASMAST-LPVLYVTGEES 137

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           L  +  R + +DL   L       E  +E            +IV DSV  L   +     
Sbjct: 138 LAQVAGRAVRLDLP--LEGLNALAETGIENILQHASVARPKLIVADSVQTLWTESLTAAP 195

Query: 167 MGESLPGMQARLMSQALRK 185
              S     A  + +  ++
Sbjct: 196 GSVSQVRESAARLVRYAKE 214


>gi|21242016|ref|NP_641598.1| DNA repair protein RadA [Xanthomonas axonopodis pv. citri str. 306]
 gi|294627027|ref|ZP_06705617.1| DNA repair protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|294664347|ref|ZP_06729711.1| DNA repair protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|21107415|gb|AAM36134.1| DNA repair protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|292598689|gb|EFF42836.1| DNA repair protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292605887|gb|EFF49174.1| DNA repair protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 463

 Score = 45.2 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 4/139 (2%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+G    D  LG GG  +G +V I G    GK+TL L  +A    T     +V  E +
Sbjct: 79  RVSTGIGEFDRVLG-GGLVEGAVVLIGGDPGIGKSTLLLQALASMAST-LPVLYVTGEES 136

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           L  +  R + +DL   L       E  +E            +IV DSV  L   +     
Sbjct: 137 LAQVAGRAVRLDLP--LEGLNALAETGIENILQHASVARPKLIVADSVQTLWTESLTAAP 194

Query: 167 MGESLPGMQARLMSQALRK 185
              S     A  + +  ++
Sbjct: 195 GSVSQVRESAARLVRYAKE 213


>gi|78046868|ref|YP_363043.1| DNA repair protein RadA [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78035298|emb|CAJ22943.1| DNA repair protein [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 463

 Score = 45.2 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 4/139 (2%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+G    D  LG GG  +G +V I G    GK+TL L  +A    T     +V  E +
Sbjct: 79  RVSTGIGEFDRVLG-GGLVEGAVVLIGGDPGIGKSTLLLQALASMAST-LPVLYVTGEES 136

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           L  +  R + +DL   L       E  +E            +IV DSV  L   +     
Sbjct: 137 LAQVAGRAVRLDLP--LEGLNALAETGIENILQHASVARPKLIVADSVQTLWTESLTAAP 194

Query: 167 MGESLPGMQARLMSQALRK 185
              S     A  + +  ++
Sbjct: 195 GSVSQVRESAARLVRYAKE 213


>gi|167036770|ref|YP_001664348.1| DNA repair protein RadA [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|167039490|ref|YP_001662475.1| DNA repair protein RadA [Thermoanaerobacter sp. X514]
 gi|166853730|gb|ABY92139.1| DNA repair protein RadA [Thermoanaerobacter sp. X514]
 gi|166855604|gb|ABY94012.1| DNA repair protein RadA [Thermoanaerobacter pseudethanolicus ATCC
           33223]
          Length = 457

 Score = 45.2 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 56/161 (34%), Gaps = 15/161 (9%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + +G    D  LG GG  KG +V I G    GK+TL L        +     +V  E 
Sbjct: 65  ERIRTGIEEFDRVLG-GGIVKGSLVLIGGDPGIGKSTLLLQVAGNISDS-RKVLYVSGEE 122

Query: 106 ALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           ++  I   A ++  + + + +      E+     +  +     D ++IDS+  +      
Sbjct: 123 SVQQIKLRADRILKEKQRIYLLCETNIEE----IERKIDENKPDFVIIDSIQTIYTE--- 175

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
                          + Q  +KL     +    +  I  + 
Sbjct: 176 ----ESETIPGSVSQIRQVTQKLMEIAKQKDISIFLIGHVT 212


>gi|260436157|ref|ZP_05790127.1| circadian clock protein KaiC [Synechococcus sp. WH 8109]
 gi|260414031|gb|EEX07327.1| circadian clock protein KaiC [Synechococcus sp. WH 8109]
          Length = 501

 Score = 45.2 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 60/181 (33%), Gaps = 30/181 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG   LD   G GGF K  I+   G   +GKT L    +  + 
Sbjct: 237 MRLTQRSSNV----RVSSGVPRLDDMCG-GGFFKDSIILATGATGTGKTMLVSKFLEDAC 291

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
           +          E +   +        +            ++ + P++   E  L+I    
Sbjct: 292 RNKERAILFAYEESRAQLLRNGTSWGIDFEQMEQDGLLKIICAYPESTGLEDHLQIIKTE 351

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       + IDS++AL          G S          Q +  +T    + +    F 
Sbjct: 352 ICQFKPSRMAIDSLSALA--------RGVSH-----NAFRQFVIGVTGYAKQEEIAGFFT 398

Query: 201 N 201
           N
Sbjct: 399 N 399



 Score = 42.1 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           ++ + +G  G D     GG P GR   I G   +GKT  +LH +    K 
Sbjct: 2  QVQKLPTGIEGFDDVC-QGGLPIGRSTLISGTSGTGKTVFSLHFLHNGIKQ 51


>gi|239929728|ref|ZP_04686681.1| DNA repair protein RadA [Streptomyces ghanaensis ATCC 14672]
 gi|291438053|ref|ZP_06577443.1| DNA repair protein RadA [Streptomyces ghanaensis ATCC 14672]
 gi|291340948|gb|EFE67904.1| DNA repair protein RadA [Streptomyces ghanaensis ATCC 14672]
          Length = 469

 Score = 45.2 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 5/129 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G +V + G    GK+TL L   A+S        +V  E +  
Sbjct: 74  STGVPELDRVLG-GGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESAS 132

Query: 109 SIYARKLGVD-LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
            +  R   +  + + L    +T    L      + +    ++++DSV  +          
Sbjct: 133 QVRLRADRIHAIDDHLYLAAETD---LAAVLGHLDAVKPSLLIMDSVQTVASPEIDGAPG 189

Query: 168 GESLPGMQA 176
           G +     A
Sbjct: 190 GMAQVREVA 198


>gi|330821541|ref|YP_004350403.1| Rad553 [Burkholderia gladioli BSR3]
 gi|327373536|gb|AEA64891.1| Rad553 [Burkholderia gladioli BSR3]
          Length = 507

 Score = 45.2 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 55/159 (34%), Gaps = 9/159 (5%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + + +G   LD  +G GGF +G    + GP   GKT LAL  +      G    ++    
Sbjct: 261 QRLDTGLPHLDHLIG-GGFVRGSTTTVIGPAGVGKTLLALQFLQAGIARGEKVVYL---- 315

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL----TPRA 161
                  R +G      ++ +    +  L +         VD +   ++A +      R 
Sbjct: 316 GFYESPQRLIGKAEAVGILLREGFADGRLTMQWQPAVELEVDELAATTLALIRRLGASRL 375

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            I+G  G     ++       L   T ++  S    +  
Sbjct: 376 VIDGMEGFRDSALRPARFGLFLNAFTHALRDSGVTTMLT 414



 Score = 38.3 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
           S+  + + +E   +G  GLD  LG GGF +G +  I G   +GKT L+        + G 
Sbjct: 21  SEARLPDNVE---TGVPGLDEILG-GGFVRGGLYLIEGMAGAGKTILSSQIGFHRVRQGE 76

Query: 97  TCAFV 101
              ++
Sbjct: 77  RVLYM 81


>gi|288931897|ref|YP_003435957.1| circadian clock protein, KaiC [Ferroglobus placidus DSM 10642]
 gi|288894145|gb|ADC65682.1| putative circadian clock protein, KaiC [Ferroglobus placidus DSM
           10642]
          Length = 248

 Score = 45.2 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 28/86 (32%), Gaps = 4/86 (4%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E   +G  G D  L  GG  + R V I GP  SGKT  A+  +              A
Sbjct: 4   KLERCPTGIPGFDE-LCEGGLVRDRTVLIAGPSGSGKTIFAMQFLVNGATLYNEPGIFIA 62

Query: 104 EHALDSIYARK---LGVDLKNLLISQ 126
                          G DL+ L    
Sbjct: 63  TEERPQHLREHFAVFGWDLEKLEDEN 88


>gi|213965149|ref|ZP_03393347.1| DNA repair protein RadA [Corynebacterium amycolatum SK46]
 gi|213952263|gb|EEB63647.1| DNA repair protein RadA [Corynebacterium amycolatum SK46]
          Length = 519

 Score = 45.2 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 66/188 (35%), Gaps = 20/188 (10%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GTCAFVDAEH 105
            V +G   LD  LG G  P G +V + G    GK+TL L    +      G   +V  E 
Sbjct: 135 AVRTGIGELDRVLGSGIVP-GSLVLLAGEPGVGKSTLLLEVAYRCANGDLGPTLYVTGEE 193

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           ++  +  R        L  S   +    +E    L    +  ++++DSV  +  RA++EG
Sbjct: 194 SVGQVRLRA--ERTGALSDSLYLSAVSNIEDVIDLTLELSPGLLIVDSVQTM--RADVEG 249

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
             G                 L +    +    +F+     K G +        G   ++ 
Sbjct: 250 ARG------GVAQARAVTSALAALAKETGT-AIFLVGHVTKDGNV-------AGPRTMEH 295

Query: 226 YSSVRLDI 233
              V L+ 
Sbjct: 296 LVDVVLNF 303


>gi|284155174|gb|ADB78688.1| disrupted meiotic cDNA 1 protein [Elymus virginicus]
          Length = 139

 Score = 45.2 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 55/150 (36%), Gaps = 17/150 (11%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N++ ++  T E    +       +      ++++DSV AL  R +  G     L   Q 
Sbjct: 1   DNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALF-RVDFSGRGE--LAKRQV 57

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR 234
           + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +R
Sbjct: 58  QKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 117

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           R           G Q   K+         +
Sbjct: 118 RGK---------GEQRVCKIFDAPNLPEGE 138


>gi|183985053|ref|YP_001853344.1| DNA repair protein RadA [Mycobacterium marinum M]
 gi|183178379|gb|ACC43489.1| DNA repair protein RadA [Mycobacterium marinum M]
          Length = 491

 Score = 45.2 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 48/136 (35%), Gaps = 4/136 (2%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +G   LD  LG GG   G +  + G    GK+TL L    +  ++G    ++  E +  
Sbjct: 77  PTGIDELDRVLG-GGVVPGSVTLLAGEPGVGKSTLLLEVAHRWAQSGQRVLYISGEESAG 135

Query: 109 SIYARKLGVDLKNLL---ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
            I  R   +         IS+    + + EI           +  ID+V +     +   
Sbjct: 136 QIRLRADRIGCGGPAAPDISEVSAIDNSAEIYLAAESDLHAVLDHIDTVGSALVIVDSVQ 195

Query: 166 DMGESLPGMQARLMSQ 181
            M  S        ++Q
Sbjct: 196 TMSTSEVDGVTGGVTQ 211


>gi|123969075|ref|YP_001009933.1| circadian clock protein KaiC [Prochlorococcus marinus str. AS9601]
 gi|123199185|gb|ABM70826.1| possible circadian clock protein KaiC [Prochlorococcus marinus str.
           AS9601]
          Length = 509

 Score = 45.2 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 14/106 (13%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
            + +GK   MQ          ++ + +G  G D     GG P  R   + G   +GKT  
Sbjct: 3   DKKFGKSNKMQ----------VQKLPTGIEGFDDVC-RGGLPVSRSTLVSGTSGTGKTVF 51

Query: 84  A---LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           +   LH    +    G     +         A   G DL+ L+   
Sbjct: 52  SLQYLHHGICNFDEPGIFVTFEESPLDIIRNAASFGWDLQELIDQN 97



 Score = 41.8 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 59/185 (31%), Gaps = 30/185 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       +SSG   LD   G GG+ +  I+   G   +GKT L    +  + 
Sbjct: 248 MRLTQRSSNI----RISSGVKDLDDMCG-GGYFQDSIILATGATGTGKTMLVSKFVEDAY 302

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
                      E +   +        +            ++ + P++   E  L+I    
Sbjct: 303 NNNERAILFAYEESRAQLLRNATSWGIDFEKMESDGLLKIICAYPESTGLEDHLQIIKTQ 362

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       + IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 363 INQFKPKRMAIDSLSALA-------------RGVSLNAFRQFVIAVTGYTKQEEIAGFFT 409

Query: 201 NQMRM 205
           N    
Sbjct: 410 NTAEE 414


>gi|148269861|ref|YP_001244321.1| DNA repair protein RadA [Thermotoga petrophila RKU-1]
 gi|147735405|gb|ABQ46745.1| DNA repair protein RadA [Thermotoga petrophila RKU-1]
          Length = 441

 Score = 45.2 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 11/120 (9%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+G   LD A   GG   G+++ + G    GK+T+AL    +  + G        
Sbjct: 56  SLERLSTGFSELDRAF-RGGIVPGQVILLSGEPGIGKSTIALQIAERFAERGLVVYV--- 111

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV----RSGAVDIIVIDSVAALTP 159
                    ++L +    LL+ +       LE     +    R+  V  +V+DS+  +  
Sbjct: 112 ---SGEESPQQLKLRADRLLLKRKKNILLTLENDIDEIISSLRNERVSFMVVDSIQTVFS 168


>gi|329849355|ref|ZP_08264201.1| kaiC family protein [Asticcacaulis biprosthecum C19]
 gi|328841266|gb|EGF90836.1| kaiC family protein [Asticcacaulis biprosthecum C19]
          Length = 506

 Score = 45.2 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 67/173 (38%), Gaps = 11/173 (6%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
            S+    +++ +G    D  LG GG P  R+  ++G   SGKTTL+L  + +  + G   
Sbjct: 2   PSLPRPADLIHTGIPEFDDILG-GGLPPARVYLLHGIPGSGKTTLSLQFLIEGVRNGEKV 60

Query: 99  AFVDAEHALDSIY--ARKLGVDLKNLLIS-------QPDTGEQALEITDMLVRSGAVDII 149
            +V      D +   A+  G+ +  + I          D   Q +      V        
Sbjct: 61  LYVTLSETRDELTAVAQSHGMSIDGIEIYELIAQDRDLDPDNQYVMFQPSEVELNVTTRE 120

Query: 150 VIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           ++++V  + P+  +   + E  L    A    + +  L    +   C + F++
Sbjct: 121 ILEAVDRIQPKRVVIDSLSEIKLLAQNALRFRRQVLSLKQFFAGRDCTVFFLD 173


>gi|261380461|ref|ZP_05985034.1| DNA repair protein RadA [Neisseria subflava NJ9703]
 gi|284796703|gb|EFC52050.1| DNA repair protein RadA [Neisseria subflava NJ9703]
          Length = 458

 Score = 45.2 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 55/146 (37%), Gaps = 4/146 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
               +    +G   LD  LG GG   G ++ + G    GK+TL L TIA+  ++     +
Sbjct: 65  TATEVPRNPTGMGELDRVLG-GGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQS-RKVLY 122

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           +  E +   +  R     L+          E  +E     ++     ++VIDS+  +   
Sbjct: 123 ISGEESAQQVALRAQ--RLELPTEGVNLLAEIRMEAIQTALKQHQPAVVVIDSIQTMYSD 180

Query: 161 AEIEGDMGESLPGMQARLMSQALRKL 186
                    S     A  +++  +++
Sbjct: 181 QITSAPGSVSQVRECAAQLTRMAKQM 206


>gi|319442430|ref|ZP_07991586.1| DNA repair protein RadA [Corynebacterium variabile DSM 44702]
          Length = 484

 Score = 45.2 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 50/136 (36%), Gaps = 3/136 (2%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            SG   LD  LG GG   G  V + G    GK+TL L    +  +   +  ++ AE ++ 
Sbjct: 83  PSGIGELDRVLG-GGVVPGSAVLLAGEPGVGKSTLLLEVANRWARQDRSVLYITAEESVG 141

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +  R        L  +     E  LE     +     +++++DS+  L          G
Sbjct: 142 QVRQRA--GRTDALSANLWLAAEHDLETALGQIEVTRPELVIVDSLQTLHATGVEGVAGG 199

Query: 169 ESLPGMQARLMSQALR 184
            +     A  ++   +
Sbjct: 200 VAQTRAVAATLTTFAK 215


>gi|255719844|ref|XP_002556202.1| KLTH0H07436p [Lachancea thermotolerans]
 gi|238942168|emb|CAR30340.1| KLTH0H07436p [Lachancea thermotolerans]
          Length = 400

 Score = 45.2 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
           + SG   LD AL  GG+    I E++GP  + KT +A   +       GTC +VDA
Sbjct: 18  LRSGVAALDDAL--GGWHSRCIYELFGPPGTSKTRIAQSLVQSEMARDGTCLWVDA 71


>gi|148253888|ref|YP_001238473.1| hypothetical protein BBta_2398 [Bradyrhizobium sp. BTAi1]
 gi|146406061|gb|ABQ34567.1| hypothetical protein BBta_2398 [Bradyrhizobium sp. BTAi1]
          Length = 508

 Score = 45.2 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 4/134 (2%)

Query: 36  GSQGSIFEGIEV-VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           GSQ S    +   VS+GS GLD  LG GG    R+    G   +GKTT+AL  + + Q  
Sbjct: 7   GSQQSGEAKMSARVSTGSEGLDDILG-GGLDANRLYLYEGRPGTGKTTIALQFLLKGQSL 65

Query: 95  GGTCAFVDAEHA--LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           G    ++          + A++ G  L  + + +    E  L+    L      ++ + +
Sbjct: 66  GERVLYITLSETKRELEVVAQRHGWSLDGVDMFELVPPETTLDPERELTVFHPAEVELSE 125

Query: 153 SVAALTPRAEIEGD 166
           +   +    E    
Sbjct: 126 TTGLMFREVERMNP 139



 Score = 41.8 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF--VDA 103
           E  SSG+  LD  LG GG  +G    + G    GK+++AL     + + G    F   D 
Sbjct: 259 EFTSSGNAELDQLLG-GGLERGTNALLIGAAGVGKSSVALSYAIAAAERGEHAVFFAFDE 317

Query: 104 EHALDSIYARKLGVDLKNLLIS 125
                   AR LG+ L+  L S
Sbjct: 318 GRGTVEARARTLGLPLQRHLDS 339


>gi|209526993|ref|ZP_03275510.1| putative circadian clock protein, KaiC [Arthrospira maxima CS-328]
 gi|209492595|gb|EDZ92933.1| putative circadian clock protein, KaiC [Arthrospira maxima CS-328]
          Length = 517

 Score = 45.2 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 73/219 (33%), Gaps = 33/219 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG+  LD   G GGF K  I+   G   +GKT L    +  + 
Sbjct: 252 MRLTQRSSNV----RVSSGNKTLDEMCG-GGFFKDSIILATGATGTGKTLLVSIFVNNAC 306

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
           ++         E +   +        L            ++ S P++   E  L+I    
Sbjct: 307 QSNERAILFAYEESRAQLLRNAHSWGLDFEAMERKGLLKIICSYPESTGLEDHLQIIRSE 366

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+ +    Q +  +T    + +    F 
Sbjct: 367 ISEFKPSRIAIDSLSALA-------------RGVSSNAFRQFVIAVTGYAKQEEITGFFT 413

Query: 201 N---QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           N   Q      +      T T    +  Y  +R  + R 
Sbjct: 414 NTTDQFMGSHSITDSHISTITDTILMLQYVEIRGQMSRA 452



 Score = 37.9 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 45/149 (30%), Gaps = 22/149 (14%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KT 94
                  ++ + +   G D  +  GG P GR   + G   +GKT  A+  +         
Sbjct: 11  NKRNLISVQKIRTMIEGFDD-ISHGGMPAGRSTLVSGTSGTGKTLFAVQFLYNGITYFDE 69

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLK------NLLISQPDTGEQALEI------------ 136
            G     +         A   G DL+       L I       +  +I            
Sbjct: 70  PGILVTFEEAPTDIIKNAASFGWDLQGLIDEGKLFILDASPDPEGQDIVGNFDLSALIER 129

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
               +R      + IDSV A+  + E  G
Sbjct: 130 IQYGIRKYKARRVSIDSVTAIFQQYEAAG 158


>gi|170780996|ref|YP_001709328.1| DNA repair protein RadA [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169155564|emb|CAQ00680.1| putative DNA repair protein RadA [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 463

 Score = 45.2 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 8/122 (6%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           +IM +G+  +       + SG   LD  LG GG   G  + + G    GK+TL L   A+
Sbjct: 69  SIMHVGTASASH-----MPSGVGELDRVLG-GGIVPGAAILMSGEPGVGKSTLLLEVAAR 122

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +   G    +V AE ++  +  R        L  S     E  L      +   A D+++
Sbjct: 123 AAAKGAKVLYVTAEESVAQVRMRA--ERTGGLQESLMIAAETDLGTILGHIEQVAPDLLI 180

Query: 151 ID 152
           +D
Sbjct: 181 VD 182


>gi|86605055|ref|YP_473818.1| DNA repair protein RadA [Synechococcus sp. JA-3-3Ab]
 gi|86553597|gb|ABC98555.1| DNA repair protein RadA [Synechococcus sp. JA-3-3Ab]
          Length = 472

 Score = 44.8 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 52/146 (35%), Gaps = 6/146 (4%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
             +SSGS   D  LG GG   G +V I G    GK+TL L T A   K G        E 
Sbjct: 76  PRLSSGSGEFDRVLG-GGIVPGSLVLIGGDPGIGKSTLLLQTAAHLAKRGPILYVSGEES 134

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQA-----LEITDMLVRSGAVDIIVIDSVAALTPR 160
           A             ++L +              LE     +++    + +IDS+ A+   
Sbjct: 135 AQQIKLRAARISGTESLRLGIESEQLYLLAETDLEAIVAEIQALQPQVAIIDSIQAIFWG 194

Query: 161 AEIEGDMGESLPGMQARLMSQALRKL 186
                    S     A L+ +  +KL
Sbjct: 195 QLSSAPGSVSQVRECAGLLMRVAKKL 220


>gi|289596121|ref|YP_003482817.1| KaiA binding protein [Aciduliprofundum boonei T469]
 gi|289533908|gb|ADD08255.1| KaiA binding protein [Aciduliprofundum boonei T469]
          Length = 224

 Score = 44.8 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 69/199 (34%), Gaps = 5/199 (2%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG--GTCAFV 101
            I  + SG  GLD +L  GGFP   ++ I G   SGKTT A   + +  K G  G     
Sbjct: 2   PISRIPSGIKGLD-SLVEGGFPAPSVILISGTAGSGKTTFAFQFLMEGAKKGEKGLYIST 60

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
            +E     +             +       + +      + +  + I + + +A   P+ 
Sbjct: 61  LSERTEWMLRFMSNYEFFDPKYLEDGTIIYEDIGKDLGTLDNMKLIIRINEILAEHVPQR 120

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
            +   +  ++         Q L +L + +     + +   +++           T  G  
Sbjct: 121 IVIDPI--NVVNNFVDNYRQFLFELVTLLKNWSAVSILTGEIKEGEKYPEDVGYTADGII 178

Query: 222 ALKFYSSVRLDIRRVGSIK 240
           +L   +   +  R +  +K
Sbjct: 179 SLLMKTEDNVIKRYIQILK 197


>gi|302559259|ref|ZP_07311601.1| DNA repair protein RadA [Streptomyces griseoflavus Tu4000]
 gi|302476877|gb|EFL39970.1| DNA repair protein RadA [Streptomyces griseoflavus Tu4000]
          Length = 469

 Score = 44.8 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 5/129 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G +V + G    GK+TL L   A+S        +V  E +  
Sbjct: 74  STGVPELDRVLG-GGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASAEHPTLYVTGEESAS 132

Query: 109 SIYARKLGVD-LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
            +  R   +  + + L    +T    L      + +    ++++DSV  +          
Sbjct: 133 QVRLRADRIHAIDDHLYLAAETD---LSAVLGHLDAVKPSLLIMDSVQTVASPEIDGAPG 189

Query: 168 GESLPGMQA 176
           G +     A
Sbjct: 190 GMAQVREVA 198


>gi|242010813|ref|XP_002426153.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212510200|gb|EEB13415.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 325

 Score = 44.8 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 6/98 (6%)

Query: 21  SQIQRVYGKGAIMQLGSQ--GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
            QI   Y   + ++ G +   ++     ++SSG   LD  L  GGF  G I E+ G E  
Sbjct: 55  DQILAKY--SSSLKRGDKYYKNLINHCAIISSGIDKLDGLLN-GGFITGNIYELCGYEGC 111

Query: 79  GKTTLAL-HTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           GKT + +   I    +T     F D ++ +      ++
Sbjct: 112 GKTQICMTTAIKICSRTPHKVLFFDTKYDISINRLNQI 149


>gi|295395588|ref|ZP_06805782.1| DNA repair protein RadA [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971607|gb|EFG47488.1| DNA repair protein RadA [Brevibacterium mcbrellneri ATCC 49030]
          Length = 431

 Score = 44.8 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 3/131 (2%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G ++ + G    GK+TL L   A++ K G    +V  E +  
Sbjct: 49  STGVSELDRVLG-GGLVPGAVILLAGEPGVGKSTLLLDVSAKAAKAGRRVLYVTGEESQG 107

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +  R        L  +     E  L     L+     +++++DSV  L          G
Sbjct: 108 QVRLRA--ERTGALSDNLLLANETDLAAVLGLIEVEDPELLIVDSVQTLASDRVEGVPGG 165

Query: 169 ESLPGMQARLM 179
            +     A  +
Sbjct: 166 VTQVREVASAV 176


>gi|256752491|ref|ZP_05493348.1| DNA repair protein RadA [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748626|gb|EEU61673.1| DNA repair protein RadA [Thermoanaerobacter ethanolicus CCSD1]
          Length = 463

 Score = 44.8 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 56/161 (34%), Gaps = 15/161 (9%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + +G    D  LG GG  KG +V I G    GK+TL L        +     +V  E 
Sbjct: 71  ERIRTGIEEFDRVLG-GGIVKGSLVLIGGDPGIGKSTLLLQVAGNISDS-RKVLYVSGEE 128

Query: 106 ALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           ++  I   A ++  + + + +         +E  +  +     D ++IDS+  +      
Sbjct: 129 SVQQIKLRADRILKEKQRIYLLCETN----IEEIERKIDENKPDFVIIDSIQTIYTE--- 181

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
                          + Q  +KL     +    +  I  + 
Sbjct: 182 ----ESETIPGSVSQIRQVTQKLMEIAKQKDISIFLIGHVT 218


>gi|91070506|gb|ABE11415.1| putative circadian clock protein KaiC [uncultured Prochlorococcus
           marinus clone HOT0M-1A11]
          Length = 513

 Score = 44.8 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 14/106 (13%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
            + +GK   MQ          ++ + +G  G D     GG P  R   + G   +GKT  
Sbjct: 7   DKKFGKSNKMQ----------VQKLPTGIEGFDDVC-RGGLPVSRSTLVSGTSGTGKTVF 55

Query: 84  A---LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           +   LH    +    G     +         A   G DL++L+   
Sbjct: 56  SLQYLHHGICNFDEPGIFVTFEESPLDIIRNAASFGWDLQDLIDQN 101



 Score = 41.0 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 58/185 (31%), Gaps = 30/185 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L    S       +SSG   LD   G GG+ +  I+   G   +GKT L    +  + 
Sbjct: 252 MRLTQSSSNI----RISSGVKDLDDMCG-GGYFQDSIILATGATGTGKTMLVSKFVEDAY 306

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
                      E +   +        +            ++ + P++   E  L+I    
Sbjct: 307 SNNERAILFAYEESRAQLLRNATSWGIDFEKMESDGLLKIICAYPESTGLEDHLQIIKTQ 366

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       + IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 367 INQFKPKRMAIDSLSALA-------------RGVSLNAFRQFVIAVTGYTKQEEIAGFFT 413

Query: 201 NQMRM 205
           N    
Sbjct: 414 NTAEE 418


>gi|298386431|ref|ZP_06995987.1| replicative DNA helicase [Bacteroides sp. 1_1_14]
 gi|298260808|gb|EFI03676.1| replicative DNA helicase [Bacteroides sp. 1_1_14]
          Length = 461

 Score = 44.8 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 51/171 (29%), Gaps = 21/171 (12%)

Query: 4   RKEMNIVDKSKALEA--ALSQIQRVYGKGAIMQ-----LGSQ--------GSIFEGIEVV 48
            + M+I D    ++A   L +++  +G    M+     +                GI  +
Sbjct: 131 DETMDIAD--TLIDAHNLLDRLEGEFGHNDHMRDMDALMTDTMEEAEKRIAKSVNGITGI 188

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--HA 106
            +G   L+      G   G ++ I    S GKT  ALH   Q+   G   A    E    
Sbjct: 189 PTGLTDLNRM--TSGLQNGELIAIAARPSVGKTAFALHLARQAAMQGHAVAVYSLEMQGE 246

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
             +        D+              +          A   I +D   ++
Sbjct: 247 RLADRWLLSASDINPYRWRTGIPNPHEVAEAHTTAAELARLPIHVDDSTSI 297


>gi|325288484|ref|YP_004264665.1| DNA repair protein RadA [Syntrophobotulus glycolicus DSM 8271]
 gi|324963885|gb|ADY54664.1| DNA repair protein RadA [Syntrophobotulus glycolicus DSM 8271]
          Length = 448

 Score = 44.8 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 63/196 (32%), Gaps = 6/196 (3%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE + +G+  L+  LG G  P G  V + G    GK+TL L       K          
Sbjct: 63  EIERLDTGNGELNRVLGGGAVP-GSFVLVSGEPGIGKSTLLLQLADYLSKENNVLYVSGE 121

Query: 104 EHALD-SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           E A    I A +LG+    L I       +  EI    V      ++VIDS+  +     
Sbjct: 122 ESARQIKIRADRLGISSSKLHILTETILHRIREI----VLQDNYQVLVIDSIQTMMLEDL 177

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
                  S     A  + +  ++    I     I    N    ++            G+ 
Sbjct: 178 ESAPGSVSQVREGAAFLMKLAKENHIIIFLVGHITKDGNIAGPRVLEHMVDTVLCFEGDQ 237

Query: 223 LKFYSSVRLDIRRVGS 238
              Y  +R    R G 
Sbjct: 238 HYIYRLLRTIKNRFGP 253


>gi|315605186|ref|ZP_07880233.1| DNA repair protein RadA [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313107|gb|EFU61177.1| DNA repair protein RadA [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 461

 Score = 44.8 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 56/140 (40%), Gaps = 4/140 (2%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---GGTCAFVDAEH 105
           S+G   LD  LG GG   G ++ + G    GK+TL L   A++ +T   GG    +    
Sbjct: 69  STGVGELDRVLG-GGIVPGAVILLAGEPGVGKSTLLLDVAAKAARTARSGGLGPVLYVTG 127

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
              +   R     +  L  +     E  L +    VR  A  ++++DSV  ++      G
Sbjct: 128 EESAAQVRGRAERIGALEPNLLIADETELGVVLGHVRQSAPSLLIVDSVQTISSAQVEGG 187

Query: 166 DMGESLPGMQARLMSQALRK 185
             G +     A  + +  ++
Sbjct: 188 AGGVAQVRAVAASLIRVAKE 207


>gi|325914847|ref|ZP_08177182.1| DNA repair protein RadA [Xanthomonas vesicatoria ATCC 35937]
 gi|325538938|gb|EGD10599.1| DNA repair protein RadA [Xanthomonas vesicatoria ATCC 35937]
          Length = 464

 Score = 44.8 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 4/139 (2%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+G    D  LG GG  +G +V I G    GK+TL L  +A    T     +V  E +
Sbjct: 80  RVSTGIGEFDRVLG-GGLVEGAVVLIGGDPGIGKSTLLLQALASMAST-LPVLYVTGEES 137

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           L  +  R + +DL   L       E  +E            +IV DSV  L   +     
Sbjct: 138 LAQVAGRAVRLDLP--LEGLNALAETGIENILQHASVARPKLIVADSVQTLWTESLTAAP 195

Query: 167 MGESLPGMQARLMSQALRK 185
              S     A  + +  ++
Sbjct: 196 GSVSQVRESAARLVRFAKE 214


>gi|157413904|ref|YP_001484770.1| circadian clock protein KaiC [Prochlorococcus marinus str. MIT
           9215]
 gi|157388479|gb|ABV51184.1| possible circadian clock protein KaiC [Prochlorococcus marinus str.
           MIT 9215]
          Length = 512

 Score = 44.8 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 14/106 (13%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
            + +GK   MQ          ++ + +G  G D     GG P  R   + G   +GKT  
Sbjct: 3   DKKFGKSNKMQ----------VQKLPTGIEGFDDVC-RGGLPVSRSTLVSGTSGTGKTVF 51

Query: 84  A---LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           +   LH    +    G     +         A   G DL+ L+   
Sbjct: 52  SLQYLHHGICNFDEPGIFVTFEESPLDIIRNAASFGWDLQELIDQN 97



 Score = 41.4 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 59/185 (31%), Gaps = 30/185 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       +SSG   LD   G GG+ +  I+   G   +GKT L    +  + 
Sbjct: 248 MRLTQRSSNI----RISSGVKDLDDMCG-GGYFQDSIILATGATGTGKTMLVSKFVEDAY 302

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
                      E +   +        +            ++ + P++   E  L+I    
Sbjct: 303 NNNERAILFAYEESRAQLLRNATSWGIDFEKMESDGLLKIICAYPESTGLEDHLQIIKTQ 362

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       + IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 363 ITQFKPKRMAIDSLSALA-------------RGVSLNAFRQFVIAVTGYTKQEEIAGFFT 409

Query: 201 NQMRM 205
           N    
Sbjct: 410 NTAEE 414


>gi|312960840|ref|ZP_07775345.1| putative circadian clock protein KaiC [Pseudomonas fluorescens WH6]
 gi|311284498|gb|EFQ63074.1| putative circadian clock protein KaiC [Pseudomonas fluorescens WH6]
          Length = 511

 Score = 44.8 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA--FVDA 103
           + +SSG   +D  +G GG   G    I GP  +GK+ +++   A +   G   A    D 
Sbjct: 264 QTLSSGIAEMDALMG-GGVETGSSSLILGPAGTGKSLISMIFAAAAVARGEKAALFIFDE 322

Query: 104 EHALDSIYARKLGVDLKNL 122
           E  L     R +G+DL  L
Sbjct: 323 ELGLLFERMRNMGIDLAAL 341



 Score = 39.4 bits (90), Expect = 0.92,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 3/101 (2%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           G  GLD  L  GG  +  +  + G   +GKTT+ALH +    K G    ++        +
Sbjct: 27  GIEGLDDIL-RGGLSRSHLFLLEGEPGTGKTTVALHFLQAGAKDGERSLYITLSETEREL 85

Query: 111 YA--RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
                  G +L + +     T  ++L   +          +
Sbjct: 86  RQGAESHGWNLDDNIHIFELTPPESLLNAEHQQSLLYSSDL 126


>gi|300915260|ref|ZP_07132575.1| DNA repair protein RadA [Thermoanaerobacter sp. X561]
 gi|307725184|ref|YP_003904935.1| DNA repair protein RadA [Thermoanaerobacter sp. X513]
 gi|320115192|ref|YP_004185351.1| DNA repair protein RadA [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|300888984|gb|EFK84131.1| DNA repair protein RadA [Thermoanaerobacter sp. X561]
 gi|307582245|gb|ADN55644.1| DNA repair protein RadA [Thermoanaerobacter sp. X513]
 gi|319928283|gb|ADV78968.1| DNA repair protein RadA [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 463

 Score = 44.8 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 49/159 (30%), Gaps = 11/159 (6%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + +G    D  LG GG  KG +V I G    GK+TL L        +         E 
Sbjct: 71  ERIRTGIEEFDRVLG-GGIVKGSLVLIGGDPGIGKSTLLLQVAGNISDSRKVLYVSGEES 129

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
                      +  K  +    +T  + +E     +     D ++IDS+  +        
Sbjct: 130 VQQIKLRADRILKEKQRIYLLCETNIEEIE---RKIDENKPDFVIIDSIQTIYTE----- 181

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
                        + Q  +KL     +    +  I  + 
Sbjct: 182 --ESETIPGSVSQIRQVTQKLMEIAKQKDISIFLIGHVT 218


>gi|124027309|ref|YP_001012629.1| hypothetical protein Hbut_0418 [Hyperthermus butylicus DSM 5456]
 gi|123978003|gb|ABM80284.1| RecA-superfamily ATPase, Rad55 [Hyperthermus butylicus DSM 5456]
          Length = 257

 Score = 44.8 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            IE V +G  GLD  L  GG P+  +V + G   +GKT ++   +    + G    +V  
Sbjct: 2   PIERVKTGIPGLDEILN-GGIPRRNVVLLSGGPGTGKTIMSQQYLWNGLQMGEPGVYVAL 60

Query: 104 E--HALDSIYARKLGVDLKNL 122
           E       I   + G D++  
Sbjct: 61  EEHPVQVRINMAQFGWDVRPY 81


>gi|73966608|ref|XP_537695.2| PREDICTED: similar to RAD51 homolog C isoform 1 isoform 1 [Canis
           familiaris]
          Length = 327

 Score = 44.8 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 54/193 (27%), Gaps = 26/193 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           + +    LD  LG GG P  +  EI G    GKT L +      Q         G   F+
Sbjct: 91  IITFCSALDNILG-GGIPLTKTTEICGVPGVGKTQLCMQLAVDVQIPECFGGVEGEAVFI 149

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           D E +            +  ++       +    I    +       +   ++  +    
Sbjct: 150 DTEGSFM----------VDRVVDLATACIQHLHLIAGRHMGEEHSKALEDFTLENILSHI 199

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
                            +   +  L   +S     ++  NQM  KI           G +
Sbjct: 200 YYF-------RCRDYTELLAQVYLLPDFLSEHSK-VLLTNQMTTKIDRNQALLVPALGES 251

Query: 222 ALKFYSSVRLDIR 234
                +++RL   
Sbjct: 252 -WGHAATIRLIFH 263


>gi|78213639|ref|YP_382418.1| circadian clock protein KaiC [Synechococcus sp. CC9605]
 gi|78198098|gb|ABB35863.1| possible circadian clock protein KaiC [Synechococcus sp. CC9605]
          Length = 512

 Score = 44.8 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 60/181 (33%), Gaps = 30/181 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG   LD   G GGF K  I+   G   +GKT L    I  + 
Sbjct: 248 MRLTQRSSNV----RVSSGVPRLDDMCG-GGFFKDSIILATGATGTGKTMLVSKFIEDAC 302

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
           +          E +   +        +            ++ + P++   E  L+I    
Sbjct: 303 RNKERAILFAYEESRAQLLRNGTSWGIDFEQMEQDGLLKIICAYPESTGLEDHLQIIKTE 362

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       + IDS++AL          G S          Q +  +T    + +    F 
Sbjct: 363 ISQFKPSRMAIDSLSALA--------RGVSH-----NAFRQFVIGVTGYAKQEEIAGFFT 409

Query: 201 N 201
           N
Sbjct: 410 N 410



 Score = 42.5 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 37 SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
          + G     ++ + +G  G D     GG P GR   I G   +GKT  +LH +    K 
Sbjct: 6  TSGQPQMQVQKLPTGIEGFDDVC-QGGLPIGRSTLISGTSGTGKTVFSLHFLHNGIKQ 62


>gi|326795441|ref|YP_004313261.1| hypothetical protein Marme_2182 [Marinomonas mediterranea MMB-1]
 gi|326546205|gb|ADZ91425.1| hypothetical protein Marme_2182 [Marinomonas mediterranea MMB-1]
          Length = 244

 Score = 44.8 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 52/149 (34%), Gaps = 10/149 (6%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI-YGPESSGKTTLALHTIAQSQKTG 95
                 +  E  S+G   LD  LG  G+P G ++EI       G+ +L L    +     
Sbjct: 27  QNSVEHDNAERSSTGFKQLDALLGSKGWPSGDVMEILTPQPGIGELSL-LTPWLKQASKS 85

Query: 96  GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI---- 151
              AF++     ++      GV  + L +      +  L      ++SG    +++    
Sbjct: 86  KKVAFINPPFIPNAKLLELRGVASQQLWLINTPNKKDTLWAQYQCLKSGLCCAVLMWSPI 145

Query: 152 ----DSVAALTPRAEIEGDMGESLPGMQA 176
                S   L   A+    +G S    +A
Sbjct: 146 KADTTSTRKLQLAAKDSNTLGVSFRSEKA 174


>gi|124485603|ref|YP_001030219.1| tetrahydromethanopterin S-methyltransferase subunit C-like protein
           [Methanocorpusculum labreanum Z]
 gi|124363144|gb|ABN06952.1| RecA-superfamily ATPase implicated in signal transduction-like
           protein [Methanocorpusculum labreanum Z]
          Length = 238

 Score = 44.8 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + SG  GLD  +G GGF KG +  + G   +G+T  +L  + Q    G    ++ 
Sbjct: 11  IPSGIPGLDDMIG-GGFIKGSVFVLIGETGTGRTMFSLQYLYQGLLNGEKVMYIS 64


>gi|86607982|ref|YP_476744.1| circadian clock protein KaiC [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|54036144|sp|Q8GGL1|KAIC_SYNLI RecName: Full=Circadian clock protein kinase kaiC
 gi|27413902|gb|AAO12971.1| circadian clock protein KaiC [Synechococcus sp. P2]
 gi|86556524|gb|ABD01481.1| circadian clock protein kinase KaiC [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 541

 Score = 44.8 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 67/210 (31%), Gaps = 15/210 (7%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           MQL  + S       VSSG   LD   G GGF K  I+   G   +GKT+L    + +  
Sbjct: 273 MQLTQRSSNV----RVSSGIEKLDEMCG-GGFFKDSIILATGATGTGKTSLVSKFLERGC 327

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI---I 149
             G  C     E +   +        +      +    +  L+I      S  ++     
Sbjct: 328 LDGERCILFAYEESRAQLSRNASSWGIDL----EEFERQGLLKIICAYPESAGLEDHLQK 383

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN---QMRMK 206
           +   + A  P       +     G+      Q +  +T    + +    F N   Q    
Sbjct: 384 IKTEMMAFKPSRMAIDSLSALARGVSQNAFRQFVIGVTGLAKQEEITGFFTNTTDQFMGS 443

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
             +      T T    L  Y  +R ++ R 
Sbjct: 444 HSITESHISTITDTIILLQYVEIRGEMARA 473



 Score = 38.7 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 60/173 (34%), Gaps = 12/173 (6%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ----SQKTG 95
           S   GI    +G  G +  +  GG P GR   + G   +GKT  A+  +       Q+ G
Sbjct: 34  SELRGIPKKQTGIEGFED-ISHGGLPLGRTTLVSGTSGTGKTLFAMQFLYNGIVKYQEPG 92

Query: 96  GTCAFVDAEHALDSIYARKLGVDLK------NLLISQPDTGEQALEITDMLVRSGAVDII 149
               F +    +    A   G DL+       L I       +  E++     S  ++ I
Sbjct: 93  IFVTFEETPADIIRN-ASSFGWDLQALIDRGQLFILDASPDPEGYEVSGNFDLSALIERI 151

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                     R  I+           A ++ + L +LT+ + ++    V   +
Sbjct: 152 QYAIRKYKAKRVSIDSVTAIFQQYDPAGVVRRELFRLTARLKQANVTTVMTTE 204


>gi|158312223|ref|YP_001504731.1| DNA repair protein RadA [Frankia sp. EAN1pec]
 gi|158107628|gb|ABW09825.1| DNA repair protein RadA [Frankia sp. EAN1pec]
          Length = 490

 Score = 44.8 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 49/138 (35%), Gaps = 3/138 (2%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +G   LD  LG GG   G ++ + G    GK+TL L   A+S  TG     +  E +  
Sbjct: 105 PTGIGELDRVLG-GGIVPGAVILLAGEPGVGKSTLLLEVAARSAATGSRSLVITGEESAA 163

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +  R        L        E  L      V      ++V+DSV  ++         G
Sbjct: 164 QVRLRA--GRTGALHPDLWLAAETDLGAVLTHVEQVQPALLVVDSVQTISSSGFDGSAGG 221

Query: 169 ESLPGMQARLMSQALRKL 186
            +     A  + +  + L
Sbjct: 222 VTQVREVAGALIRTAKAL 239


>gi|254166802|ref|ZP_04873656.1| KaiC domain protein [Aciduliprofundum boonei T469]
 gi|289596227|ref|YP_003482923.1| putative circadian clock protein, KaiC [Aciduliprofundum boonei
           T469]
 gi|197624412|gb|EDY36973.1| KaiC domain protein [Aciduliprofundum boonei T469]
 gi|289534014|gb|ADD08361.1| putative circadian clock protein, KaiC [Aciduliprofundum boonei
           T469]
          Length = 289

 Score = 44.8 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 1/79 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + +G LGLD  L  GG        I G   +GKTT A   I +    G  C F+  + 
Sbjct: 3   EKIKTGILGLDAPL-DGGLMNKSSTVIIGSTGAGKTTFATQFIRRGLLDGQDCIFISLDE 61

Query: 106 ALDSIYARKLGVDLKNLLI 124
             + I    L +   ++  
Sbjct: 62  NKEQIIRDALNMGWDDITY 80


>gi|296118945|ref|ZP_06837518.1| DNA repair protein RadA [Corynebacterium ammoniagenes DSM 20306]
 gi|295968043|gb|EFG81295.1| DNA repair protein RadA [Corynebacterium ammoniagenes DSM 20306]
          Length = 426

 Score = 44.8 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 6/117 (5%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI---AQSQKTGGTCAFV 101
            + + +G   LD  LG G  P G +V + G    GK+TL L       Q++K   T  +V
Sbjct: 39  TKALKTGIGELDRVLGDGIIP-GSVVLMAGEPGVGKSTLLLEVAARWTQAEKNPRTALYV 97

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
            AE ++  +  R        L  +     E  L+I    V      +I++DSV  + 
Sbjct: 98  TAEESVGQVRTRA--ERTNALHDTLYLAAESNLDIVFGHVEQLKPSLIIVDSVQTMH 152


>gi|50307995|ref|XP_453997.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643132|emb|CAG99084.1| KLLA0E01079p [Kluyveromyces lactis]
          Length = 413

 Score = 44.8 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 65/181 (35%), Gaps = 10/181 (5%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + V SG   LD +L   GF    I E+YGP   GKT  A+  +  +Q     C ++D   
Sbjct: 16  DHVRSGIESLDDSLND-GFQPQSIYEVYGPPGIGKTKFAVQLVNNNQNR-MKCLWIDTFQ 73

Query: 106 ALDSIYARKLGVD---LKNLLISQPDTGEQALEITDMLVRSGAVDII-----VIDSVAAL 157
            +      +   D    K    ++     Q   +   L  +  + II     ++     +
Sbjct: 74  QVPLKLIEQGDEDEVHFKGCQFARVKKFAQLWYMFQNLKETYGLIIIDGLSQLLVEYLHM 133

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
             +     +  ++L   + + + Q L  +T   + +  ++V +N         +      
Sbjct: 134 YEKNSGYSNHRQTLHDFKVKSLIQLLVTITKYATSNNTVVVLLNDAMNTGYQDYSDDAVV 193

Query: 218 T 218
           +
Sbjct: 194 S 194


>gi|119487588|ref|ZP_01621198.1| hypothetical protein L8106_27067 [Lyngbya sp. PCC 8106]
 gi|119455757|gb|EAW36893.1| hypothetical protein L8106_27067 [Lyngbya sp. PCC 8106]
          Length = 575

 Score = 44.8 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 74/246 (30%), Gaps = 23/246 (9%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +SSG   LD  LG  G+ +G  + I G   +GKTTLA H      + G  C ++  E 
Sbjct: 256 ERISSGISRLDAMLGGEGYYQGSSILITGTAGTGKTTLAAHFAQAVCQRGEHCLYLAFEE 315

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           A + I   +  V +      +     +               + +   +  + P   I  
Sbjct: 316 APNQIIRNQRSVGVDLEPFVE-QGFLRFKAERPTATGLELHLVTLYRLIEQVKPSVVIID 374

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
            M               L +L       +  ++  N +     V +         + +  
Sbjct: 375 PMSNLTMSGTLTQAKTFLFRLIDFFKSKQITVLLTNLISGSNLVEYTEIGI---SSLMDT 431

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF----------DIMYGEG 275
           +  VR+                N+    +    M    +  E           D+  G+G
Sbjct: 432 WLEVRMMETNGER---------NRLLYVLKSRGMEHSNQMREMLLTKQGIKLSDVYLGQG 482

Query: 276 ISFFGE 281
             F G 
Sbjct: 483 QVFTGT 488



 Score = 44.4 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 6/97 (6%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI----AQSQKT 94
            S  + +   S+G  GLD  + +GG PKGR   + G    GKT LA+  +     Q  + 
Sbjct: 9   PSKHKELPKCSTGINGLDE-ITLGGLPKGRPTLVCGTAGCGKTLLAMEFLVRGAVQYDEP 67

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           G   AF +    L       LG DLK L      + +
Sbjct: 68  GVFIAFEETAEELT-ENVASLGWDLKQLTAENKISID 103


>gi|67921488|ref|ZP_00515006.1| KaiC [Crocosphaera watsonii WH 8501]
 gi|67856600|gb|EAM51841.1| KaiC [Crocosphaera watsonii WH 8501]
          Length = 504

 Score = 44.8 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 54/131 (41%), Gaps = 13/131 (9%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            ++SGS  LD   G GGF +  I+ + G   +GKT +    +A        C     E +
Sbjct: 255 RITSGSEELDRMCG-GGFFRDSIILVSGATGTGKTLMVTEFMAGGVINEERCLIFAFEES 313

Query: 107 LDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDMLVRSGAVDIIVIDSV 154
            + ++   +G  +            ++   P+T   E  L      + S   + + +DS+
Sbjct: 314 REQLFRNAIGWGVDFQQMEKEGKLKVVCRYPETTGLENHLINMKETIESFKPNRVAVDSL 373

Query: 155 AALTPRAEIEG 165
           +AL   + ++G
Sbjct: 374 SALERVSTLKG 384



 Score = 43.7 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 3/87 (3%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + IE + +   G D  L  GG PKGR   + G   S KT  A   +A+  K G    FV
Sbjct: 7   LDYIEKLETSIPGFDF-LSEGGLPKGRATLVAGTAGSSKTVFACQFLAEGIKRGENGVFV 65

Query: 102 DAEHA--LDSIYARKLGVDLKNLLISQ 126
             E          R  G ++    + +
Sbjct: 66  TFEEPPKALRRNMRGFGWNIAEWEMER 92


>gi|330882622|gb|EGH16771.1| circadian oscillation regulator KaiC-like protein [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 551

 Score = 44.8 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E V SG   LD  L +GG  +G    + GP  SGKTT+ L  +A +   G  C   + + 
Sbjct: 301 EPVPSGVKELDDLL-VGGPLRGTSTLVTGPAGSGKTTVTLAYLAAACARGEKCTIYEFDE 359

Query: 106 ALDSIYARKLGVDLK 120
            + ++ +R   + ++
Sbjct: 360 RIATLISRADSMGME 374



 Score = 42.9 bits (99), Expect = 0.082,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           +  +     +VS+G+ G D  L  GG P  R+  + G   +GKTTL L  +    K G +
Sbjct: 50  EAKMTLPRPIVSTGNAGFDSIL-KGGLPSNRLYLLEGTPGAGKTTLGLQFLLDGVKAGES 108

Query: 98  CAFVDAEHALDS 109
             ++      + 
Sbjct: 109 VLYITLSETSEE 120


>gi|325685605|gb|EGD27691.1| DNA repair protein RadA [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 458

 Score = 44.8 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 4/116 (3%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E  E V + S  L+  LG GG   G +V I G    GK+TL L  +++  +         
Sbjct: 70  EKEERVLTKSSELNRVLG-GGIVPGSLVLIGGDPGIGKSTLMLQIMSELAEKYQVLYVSG 128

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
            E A             ++ ++  P++    +E     +     D +VIDS+  + 
Sbjct: 129 EESASQIKLRADRLGLGQSPMLLYPES---NMEHIRDQIDDVKPDFVVIDSIQTMN 181


>gi|320325990|gb|EFW82049.1| circadian oscillation regulator KaiC-like protein [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320330382|gb|EFW86362.1| circadian oscillation regulator KaiC-like protein [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 515

 Score = 44.8 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E V SG   LD  L +GG  +G    + GP  SGKTT+ L  +A +   G  C   + + 
Sbjct: 265 EPVPSGVKELDDLL-VGGPLRGTSTLVTGPAGSGKTTVTLAYLAAACARGEKCTIYEFDE 323

Query: 106 ALDSIYARKLGVDLK 120
            + ++ +R   + ++
Sbjct: 324 RIATLISRADSMGME 338



 Score = 42.9 bits (99), Expect = 0.082,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           +  +     +VS+G+ G D  L  GG P  R+  + G   +GKTTL L  +    K G +
Sbjct: 14  EAKMTLPRPIVSTGNAGFDSIL-KGGLPSNRLYLLEGTPGAGKTTLGLQFLLDGVKAGES 72

Query: 98  CAFVDAEHALDS 109
             ++      + 
Sbjct: 73  VLYITLSETSEE 84


>gi|282897972|ref|ZP_06305967.1| Possible circadian clock protein KaiC [Raphidiopsis brookii D9]
 gi|281197116|gb|EFA72017.1| Possible circadian clock protein KaiC [Raphidiopsis brookii D9]
          Length = 517

 Score = 44.8 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 60/181 (33%), Gaps = 30/181 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG   LD   G GGF K  I+   G   +GKT L    I    
Sbjct: 254 MRLTQRSSNV----RVSSGVNTLDEMCG-GGFFKDSIILATGATGTGKTLLVSKFIQDGC 308

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
            +G        E +   +        +            ++ + P++   E  L+I    
Sbjct: 309 VSGERAILFAYEESRAQLSRNAYSWGIDFEELERQGLLKIICTYPESTGLEDHLQIIKSE 368

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 369 IADFKPARIAIDSLSALA-------------RGVSNNAFRQFVIGVTGYAKQEEITGFFT 415

Query: 201 N 201
           N
Sbjct: 416 N 416



 Score = 39.1 bits (89), Expect = 0.99,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 55/144 (38%), Gaps = 24/144 (16%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT----IAQSQKTGGTCA 99
           G+E + +   G D  +  GG P GR   + G   +GKT L+L      I    + G    
Sbjct: 19  GVEKIRTMIEGFDD-ISHGGLPIGRTTLLSGTSGTGKTLLSLQFLYNGITHFDEPGVFVT 77

Query: 100 FVDAEHALDSIYARKLGVDLKNLL--------ISQPDTGEQ----------ALEITDMLV 141
           F ++   +    A   G +L+ L+         + PD   Q           +E     +
Sbjct: 78  FEESPSDIIKN-AHIFGWNLQKLIEQGKLFILDASPDPEGQDIVGNFDLSALIERLQYAI 136

Query: 142 RSGAVDIIVIDSVAALTPRAEIEG 165
           R    + + IDS+ A+  + E  G
Sbjct: 137 RKYKANRVSIDSITAVFQQYEAIG 160


>gi|209946348|gb|ACI97405.1| spindle B [Drosophila simulans]
          Length = 341

 Score = 44.8 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 78/238 (32%), Gaps = 25/238 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCA 99
             VS G   LD   G GG     I E+ G    GKT L L          +    G   A
Sbjct: 86  SRVSFGCSALDRCTG-GGIVTRGITELCGAAGVGKTQLLLQLCLCVQLPRELGGLGKGVA 144

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           ++  E +  +    ++    +             + + +  + +  +   VI+ +  L  
Sbjct: 145 YICTESSFPARRLLQMSKACEKRHPQMELNFLGNIFV-ENHIEAEPLLACVINRIPRLMQ 203

Query: 160 RAEIEGDMGESLPG---------MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +  I   + +S+            +AR M +    L S   +  C +V +NQ+  + G  
Sbjct: 204 QHGIGLIIIDSVAAIFRLYNDYLERARHMRRLADALLSYADKYNCAVVCVNQVATRDG-- 261

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
               E    G         RL + RV     K    G+Q         + SP    +F
Sbjct: 262 --QDEIPCLGLQWAHLGRTRLRVSRVP----KQHRMGDQLITVRKLEILYSPETPNDF 313


>gi|148240300|ref|YP_001225687.1| circadian clock protein KaiC [Synechococcus sp. WH 7803]
 gi|147848839|emb|CAK24390.1| Circadian clock protein kinase KaiC [Synechococcus sp. WH 7803]
          Length = 512

 Score = 44.8 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 60/181 (33%), Gaps = 30/181 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG   LD   G GGF K  I+   G   +GKT L    I  + 
Sbjct: 248 MRLTQRSSNV----RVSSGVPRLDEMCG-GGFFKDSIILATGATGTGKTLLVSKFIEDAC 302

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
           +          E +   +        +            ++ + P++   E  L+I    
Sbjct: 303 RNEERAILFAYEESRAQLLRNATSWGIDFEQMEQDGMLKIICAYPESTGLEDHLQIIKTE 362

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       + IDS++AL          G S          Q +  +T    + +    F 
Sbjct: 363 ISQFKPSRMAIDSLSALA--------RGVSH-----NAFRQFVIGVTGYAKQEEIAGFFT 409

Query: 201 N 201
           N
Sbjct: 410 N 410



 Score = 43.3 bits (100), Expect = 0.055,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 37 SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
          S GS    ++ + +G  G D     GG P GR   I G   +GKT  +LH +  
Sbjct: 6  SSGSPQMQVQKLPTGIEGFDDVC-QGGLPIGRSTLISGTSGTGKTVFSLHFLHN 58


>gi|134075752|emb|CAK48100.1| unnamed protein product [Aspergillus niger]
          Length = 502

 Score = 44.8 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 77/256 (30%), Gaps = 63/256 (24%)

Query: 39  GSIFEGIEVVSSGSLGLDIAL------------------GIG------GFPKGRIVEIYG 74
                G   + +G + LD A+                  G G      G P G + E++G
Sbjct: 33  PDAASGRNAIPTGLVALDEAISAPVTLSSSTTNERIRESGEGEVERLKGLPVGHVTEVFG 92

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAF-------------VDAEHALDSIYARKLGVD--- 118
           P  +GKT L L+  A +   G    +               A         + L +    
Sbjct: 93  PPGAGKTMLGLNAAAGALGRGEGVVWIGRIVFAFASVLLYTASPLPRPRLRKLLELQSPA 152

Query: 119 --------LKNLLISQPDTGEQALEITDML---VRSGAVDIIVIDSVAAL----TPRAEI 163
                    + L   +  T    L +              ++VIDSV+A      P    
Sbjct: 153 SSSSPRSLTETLTYIRAPTLPHLLSLFHHPPASFPPPNTTLLVIDSVSAPFTPYFPNPSD 212

Query: 164 EGDMGESLPGMQARLMSQALR-------KLTSSISRSKCILVFINQMRMKIGVMFGSPET 216
                ++   +Q  L ++          +LT   SR+   ++ INQ   +I     +  +
Sbjct: 213 VNQPQQAQRDVQKWLTTRKWNVISDLAAQLTKFASRANLAVLVINQTHTRIRGQVRATLS 272

Query: 217 TT-GGNALKFYSSVRL 231
               G   +     R+
Sbjct: 273 PILSGRGWESCVRARV 288


>gi|78184126|ref|YP_376561.1| circadian clock protein KaiC [Synechococcus sp. CC9902]
 gi|78168420|gb|ABB25517.1| circadian clock protein KaiC [Synechococcus sp. CC9902]
          Length = 512

 Score = 44.8 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 60/181 (33%), Gaps = 30/181 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG   LD   G GGF K  I+   G   +GKT L    I  + 
Sbjct: 248 MRLTQRSSNV----RVSSGVPRLDEMCG-GGFFKDSIILATGATGTGKTMLVSKFIEDAC 302

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
           +          E +   +        +            ++ + P++   E  L+I    
Sbjct: 303 RNKERAILFAYEESRAQLMRNGTSWGIDFEQMEQDGLLKIICAYPESTGLEDHLQIIKTE 362

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       + IDS++AL          G S          Q +  +T    + +    F 
Sbjct: 363 ISEFKPSRMAIDSLSALA--------RGVSH-----NAFRQFVIGVTGYAKQEEIAGFFT 409

Query: 201 N 201
           N
Sbjct: 410 N 410



 Score = 41.4 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 39 GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
          G     ++ +++G  G D     GG P GR   I G   SGKT L+LH +  
Sbjct: 8  GQSQMQVQKLATGIEGFDDVC-HGGLPIGRSTLISGTSGSGKTVLSLHFLHN 58


>gi|71735581|ref|YP_273216.1| circadian oscillation regulator KaiC-like protein [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71556134|gb|AAZ35345.1| circadian oscillation regulator KaiC homolog [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 515

 Score = 44.8 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E V SG   LD  L +GG  +G    + GP  SGKTT+ L  +A +   G  C   + + 
Sbjct: 265 EPVPSGVKELDDLL-VGGPLRGTSTLVTGPAGSGKTTVTLAYLAAACARGEKCTIYEFDE 323

Query: 106 ALDSIYARKLGVDLK 120
            + ++ +R   + ++
Sbjct: 324 RIATLISRADSMGME 338



 Score = 42.1 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 3/99 (3%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           +  +     +VS+G+ G D  L  GG P  R+  + G   +GKTTL L  +    K G +
Sbjct: 14  EAKMTLPRPIVSTGNAGFDSIL-KGGLPNNRLYLLEGTPGAGKTTLGLQFLLDGVKAGES 72

Query: 98  CAFVDAEHALD--SIYARKLGVDLKNLLISQPDTGEQAL 134
             ++      +     A   G  L  + + +  + E+ L
Sbjct: 73  VLYITLSETSEELESAAHSHGWSLDGIDLFEFSSTEEVL 111


>gi|317123790|ref|YP_004097902.1| DNA repair protein RadA [Intrasporangium calvum DSM 43043]
 gi|315587878|gb|ADU47175.1| DNA repair protein RadA [Intrasporangium calvum DSM 43043]
          Length = 471

 Score = 44.8 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 5/138 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +G    D  LG GG   G +V + G    GK+TL L   A++ + G    +V  E +  
Sbjct: 73  PTGVAEFDRVLG-GGLVPGAVVLVAGEPGIGKSTLLLDVAARAARQGAQTLYVSGEESAA 131

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            + AR     +  L        E  L      V + +  ++V+DSV  +   A++EG  G
Sbjct: 132 QVRARA--DRIDALADRLYLAAETDLATVLGHVEASSPQLLVVDSVQTIAS-ADVEGQAG 188

Query: 169 E-SLPGMQARLMSQALRK 185
             S     A  + +  + 
Sbjct: 189 NVSQVREVAASLIRMAKD 206


>gi|52841349|ref|YP_095148.1| circadian clock protein KaiC [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628460|gb|AAU27201.1| DNA integration/recombination/inversion protein [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 558

 Score = 44.8 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 31/84 (36%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G   LD  LG  G+  G  + I G   + KT  A      + + G    F+  E + 
Sbjct: 251 LSTGIKALDSMLGSKGYQTGSQIIISGRSGTAKTLFATSFAQSAVRQGRKVLFISFEESP 310

Query: 108 DSIYARKLGVDLKNLLISQPDTGE 131
           + +      +++  +         
Sbjct: 311 NDLIRHVKSINIDLMKYITKKKLH 334


>gi|327400796|ref|YP_004341635.1| hypothetical protein Arcve_0909 [Archaeoglobus veneficus SNP6]
 gi|327316304|gb|AEA46920.1| hypothetical protein Arcve_0909 [Archaeoglobus veneficus SNP6]
          Length = 129

 Score = 44.8 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           +E VS+G  GLD  L  GG   GR   + G   SGKTTLA H ++    +G    ++
Sbjct: 1   MEKVSTGIEGLDKMLN-GGLVPGRTYLVKGGPGSGKTTLATHFLSAGVASGERVMYI 56


>gi|319793449|ref|YP_004155089.1| circadian clock protein, kaic [Variovorax paradoxus EPS]
 gi|315595912|gb|ADU36978.1| putative circadian clock protein, KaiC [Variovorax paradoxus EPS]
          Length = 500

 Score = 44.8 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 63/201 (31%), Gaps = 16/201 (7%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +SSG+  LD  LG GG   G  +   GP   GKTT A+     S + GG  A    + 
Sbjct: 252 EPLSSGNADLDRLLG-GGLTPGTNLLFAGPAGVGKTTTAVCCARASVERGGKAAIFLFDE 310

Query: 106 ALDSIYAR----KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
            + ++  R     LG+D                EI+         D +    V  +    
Sbjct: 311 GVKTLMMRSRALALGIDEYASSGQLAVHAIDPAEISAGQFSHRVRDAVERQGVTTV---- 366

Query: 162 EIEGDMGESLPGMQ--ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
            +   +   L  M     LM Q    LT    +    ++ ++Q  +              
Sbjct: 367 -VIDTLNAYLIAMPGSNFLMLQMHELLTYLNLQGVTTILVLSQHGLTGEAPNDVDL---- 421

Query: 220 GNALKFYSSVRLDIRRVGSIK 240
                     R    R   +K
Sbjct: 422 SYLSDSMLQFRFFEARGQLLK 442



 Score = 44.1 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 67/209 (32%), Gaps = 21/209 (10%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +G  GLD     GG P G +  + G   +GKTTL L  + Q +  G    +V    +  
Sbjct: 15  PTGVPGLDEV-TAGGLPAGHLYLVEGTPGAGKTTLGLQFLLQGRALGKKGLYVTLSESSQ 73

Query: 109 SIYARKL--GVDLKNLLISQPDTGEQALEITDMLVRSG------AVDIIVIDSVAALTPR 160
            +    L  G DL+ + I    + E      +  +              V+  V  L P 
Sbjct: 74  ELAEGALSHGWDLQGIEIFDLVSEEGLSTEAEQSIFHPSEFELGETIRGVMAVVERLRPE 133

Query: 161 AEIEGDMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFINQ--------MRMKIGVMF 211
             +   + E  L         + +  L       +C ++ ++             I    
Sbjct: 134 RVVFDSLSELRLLSQDPMRYRRQILALKRFFLAHQCTVLLLDDRARTADGMHLHSIAHGV 193

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIK 240
              E  TG          RL + ++  +K
Sbjct: 194 IQLEQKTGTYG---SDKRRLRVVKLRGVK 219


>gi|113954227|ref|YP_731418.1| circadian clock protein KaiC [Synechococcus sp. CC9311]
 gi|113881578|gb|ABI46536.1| circadian clock protein KaiC [Synechococcus sp. CC9311]
          Length = 511

 Score = 44.8 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 59/181 (32%), Gaps = 30/181 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG   LD   G GG+ K  I+   G   +GKT L    I  + 
Sbjct: 248 MRLTQRSSNV----RVSSGVPRLDEMCG-GGYFKDSIILATGATGTGKTLLISKFIEDAC 302

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
                      E +   +        +            ++ + P++   E  L+I    
Sbjct: 303 NNKERAILFAYEESRAQLMRNGTSWGIDFEQMEQDGLLKIICAYPESTGLEDHLQIIKTE 362

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       + IDS++AL               G+      Q +  LT    + +    F 
Sbjct: 363 ISQFKPTRMAIDSLSALA-------------RGVSRNAFRQFVIALTGYAKQEEIAGFFT 409

Query: 201 N 201
           N
Sbjct: 410 N 410



 Score = 43.3 bits (100), Expect = 0.063,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 37 SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
          S GS    ++ + +G  G D     GG P GR   I G   +GKT  +LH +  
Sbjct: 6  SSGSPQMQVQKLPTGIEGFDDVC-HGGLPIGRSTLISGTSGTGKTVFSLHFLHN 58


>gi|15642972|ref|NP_228014.1| DNA repair protein RadA [Thermotoga maritima MSB8]
 gi|4980696|gb|AAD35291.1|AE001705_2 DNA repair protein [Thermotoga maritima MSB8]
          Length = 440

 Score = 44.8 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 3/116 (2%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+G   LD A   GG   G+++ + G    GK+T+AL    +  + G    +V  
Sbjct: 55  SLERLSTGFSELDRAF-RGGIVPGQVILLSGEPGIGKSTIALQIAERFAERG-LVVYVSG 112

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           E +   +  R   + LK        T E  ++     +++  V  +V+DS+  +  
Sbjct: 113 EESPQQLKLRADRLLLKRKKDIL-LTLENDIDEIISSLQNKRVSFMVVDSIQTVFS 167


>gi|170288546|ref|YP_001738784.1| DNA repair protein RadA [Thermotoga sp. RQ2]
 gi|170176049|gb|ACB09101.1| DNA repair protein RadA [Thermotoga sp. RQ2]
          Length = 441

 Score = 44.8 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 3/116 (2%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +S+G   LD A   GG   G+++ + G    GK+T+AL    +  + G    +V  
Sbjct: 56  SLERLSTGFSELDRAF-RGGIVPGQVILLSGEPGIGKSTIALQIAERFAERG-LVVYVSG 113

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           E +   +  R   + LK        T E  ++     +++  V  +V+DS+  +  
Sbjct: 114 EESPQQLKLRADRLLLKRKKDIL-LTLENDIDEIISSLQNKRVSFMVVDSIQTVFS 168


>gi|34808791|gb|AAQ82574.1| KaiC [Nostoc sp. PCC 9709]
          Length = 520

 Score = 44.8 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 59/183 (32%), Gaps = 30/183 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG   LD   G GGF K  I+   G   +GKT L    I    
Sbjct: 252 MRLTQRSSNV----RVSSGVKTLDEMCG-GGFFKDSIILATGATGTGKTLLVSKFIQDGC 306

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
             G        E +   +        +            ++ + P++   E  L+I    
Sbjct: 307 LNGEQAILFAYEESRAQLSRNASSWGIDFEELEDQGLLKIICTYPESTGLEDHLQIIKSE 366

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 367 IAIFKPARIAIDSLSALA-------------RGVSNNAFRQFVIGVTGYAKQEEITGFFT 413

Query: 201 NQM 203
           N  
Sbjct: 414 NTT 416



 Score = 40.6 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 48/149 (32%), Gaps = 22/149 (14%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KT 94
           Q  I  G+E + +   G D  +  GG P GR   I G   +GKT  +L  +         
Sbjct: 11  QTPIIRGVEKIRTMIEGFDD-ISHGGLPIGRTTLISGTSGTGKTLFSLQFLYNGITYFDE 69

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLIS------QPDTGEQALEI------------ 136
            G     +   +     A   G +L  L+              +  +I            
Sbjct: 70  AGVFVTFEESPSDIIKNAHVFGWNLPRLIEEGKLFILDASPDPEGQDIVGNFDLSALIER 129

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
               +R      + IDS+ A+  + E  G
Sbjct: 130 LQYAIRKYKAKRVSIDSITAVFQQYEAMG 158


>gi|29831253|ref|NP_825887.1| DNA repair protein RadA [Streptomyces avermitilis MA-4680]
 gi|29608368|dbj|BAC72422.1| putative DNA repair protein [Streptomyces avermitilis MA-4680]
          Length = 469

 Score = 44.8 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 6/121 (4%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G +V + G    GK+TL L   A++        +V  E +  
Sbjct: 74  STGVPELDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESAS 132

Query: 109 SIYARKLGVD-LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
            +  R   +  + + L    +T    L      + +    ++++DSV  +    EI+G  
Sbjct: 133 QVRMRADRIKAIDDHLYLAAETD---LAAVLGHLDAVKPSLLIMDSVQTVAS-PEIDGAP 188

Query: 168 G 168
           G
Sbjct: 189 G 189


>gi|253577149|ref|ZP_04854469.1| DNA repair protein RadA [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843393|gb|EES71421.1| DNA repair protein RadA [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 455

 Score = 44.8 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 7/115 (6%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
             + +G   L+  LG GG   G +V + G    GK+TL L T  +  ++G    ++  E 
Sbjct: 69  PRIQTGIGELNRVLG-GGVVPGSLVLVGGDPGIGKSTLLLQTSHEMARSGLRVLYISGEE 127

Query: 106 ALDS--IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           ++    + A +LG     L +    + +   E     +     + +VIDS+  + 
Sbjct: 128 SVRQTKLRAERLGTLSAELFVLCESSMDGIEE----AIEQVKPNFLVIDSIQTVY 178


>gi|312621692|ref|YP_004023305.1| DNA repair protein rada [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202159|gb|ADQ45486.1| DNA repair protein RadA [Caldicellulosiruptor kronotskyensis 2002]
          Length = 446

 Score = 44.8 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 8/128 (6%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           A+++L    ++    E   SG   LD  LG GGF KG ++ + G    GK+TL L     
Sbjct: 53  AVLKL---SNVSTKEERFLSGIEELDTVLG-GGFVKGELILLGGEPGIGKSTLLLQVANI 108

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
             +      +V  E   + +  R   +++        +T     ++   ++     + ++
Sbjct: 109 LSER-MKVLYVSGEEGANQLKLRAQRLNIDGNFDVVCET---NFDLIKNIILETKPEFVI 164

Query: 151 IDSVAALT 158
           IDS+  + 
Sbjct: 165 IDSIQTMY 172


>gi|110349611|gb|ABG73280.1| putative DMC1 protein [Leucoagaricus sp. S59]
          Length = 83

 Score = 44.8 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 17 EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
          EAA   +   +  G              I ++S+GS  +D  LG GG     I E+YG  
Sbjct: 1  EAAHKILGSSFATG-----VEVQERRRRIHIISTGSKSVDAILG-GGLMSQSITEVYGEF 54

Query: 77 SSGKTTLALHTIAQSQ 92
           +GKT +A      +Q
Sbjct: 55 RTGKTQMAHTMSVVAQ 70


>gi|330809925|ref|YP_004354387.1| putative circadian oscillation regulator KaiC [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327378033|gb|AEA69383.1| putative circadian oscillation regulator KaiC [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 500

 Score = 44.8 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA--FVDA 103
           + +SSG   LD  LG GG   G    I GP  +GK+ +AL   A +   G   A    D 
Sbjct: 252 QQLSSGIGELDALLG-GGIETGSSTLILGPAGTGKSLIALIFAAAAVHRGEKAALFIFDE 310

Query: 104 EHALDSIYARKLGVDLKNL 122
           E  L     + +G+DL+ L
Sbjct: 311 ELGLLFERMKNIGIDLQAL 329



 Score = 43.3 bits (100), Expect = 0.053,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 3/102 (2%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G  GLD  L  GG  +G +  + G   +GKTT+ALH +    K G    ++        
Sbjct: 14  TGIEGLDDVLS-GGLSRGHVFLLEGEPGTGKTTVALHFLLAGAKAGERSLYITLSETERE 72

Query: 110 IYARKL--GVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           +       G  L + +     T  ++L   +          +
Sbjct: 73  LRQGATSHGWTLDDNIHIFELTPPESLLNAEHQQSLLYSSDL 114


>gi|331242297|ref|XP_003333795.1| DNA repair and recombination protein radA [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
 gi|309312785|gb|EFP89376.1| DNA repair and recombination protein radA [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
          Length = 514

 Score = 44.8 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 8/80 (10%)

Query: 48  VSSGSLGLDIALGI--GGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGGT---CA 99
           ++ GS  LD   G   GG P G + EI G  + GKT LAL      Q     GG    C 
Sbjct: 93  ITLGSADLDRVFGSPQGGIPTGLLTEIAGESACGKTCLALQLSLNVQLPHSLGGLLGGCI 152

Query: 100 FVDAEHALDSIYARKLGVDL 119
           ++  E A  +    ++   L
Sbjct: 153 YLCTESAFPTRRLHEMAAGL 172


>gi|188579417|ref|YP_001922862.1| circadian clock protein, KaiC [Methylobacterium populi BJ001]
 gi|179342915|gb|ACB78327.1| putative circadian clock protein, KaiC [Methylobacterium populi
           BJ001]
          Length = 506

 Score = 44.4 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 53/162 (32%), Gaps = 22/162 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+G   LD  L  GG    R+  + G   +GKTTLAL  + +    G    +V     
Sbjct: 15  RISTGVPSLDDVL-CGGLTPSRLYLLEGTPGTGKTTLALQYLREGMARGERALYVTLSET 73

Query: 107 LDSIY-------ARKLGVDLKNLLISQPDTGEQALEITD--------------MLVRSGA 145
            + +            G+++  L+       +    I                  V    
Sbjct: 74  TEELRAAAATHGWALDGINVHELVDEDGLDPDGEQSILHPSEIELGETVREVIARVDKTK 133

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
            D +V DS++ L   A+        +  ++     +A   L 
Sbjct: 134 PDRVVFDSLSELRLLAQNPLRYRRQILALKRFFAKRACTVLM 175


>gi|148240583|ref|YP_001225970.1| DNA repair protein RadA [Synechococcus sp. WH 7803]
 gi|147849122|emb|CAK24673.1| DNA repair protein RadA [Synechococcus sp. WH 7803]
          Length = 464

 Score = 44.4 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 13/130 (10%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++  LG Q      ++ +SSG   LD  LG GG   G +V + G    GK+TL L + + 
Sbjct: 63  SMAALGDQ-----PLQRLSSGYGELDRVLG-GGLVPGSLVLVGGDPGIGKSTLLLQSASA 116

Query: 91  SQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
                 +  +V AE +   +    ++L  D  +L +      +  LE  + L      D+
Sbjct: 117 IAS-DRSVLYVSAEESAQQVKLRWQRLTADPSDLQLLAETDLDLVLEELEAL----QPDV 171

Query: 149 IVIDSVAALT 158
            +IDS+ AL 
Sbjct: 172 AIIDSIQALH 181


>gi|88807438|ref|ZP_01122950.1| circadian clock protein KaiC [Synechococcus sp. WH 7805]
 gi|88788652|gb|EAR19807.1| circadian clock protein KaiC [Synechococcus sp. WH 7805]
          Length = 512

 Score = 44.4 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 60/181 (33%), Gaps = 30/181 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG   LD   G GGF K  I+   G   +GKT L    I  + 
Sbjct: 248 MRLTQRSSNV----RVSSGVPRLDEMCG-GGFFKDSIILATGATGTGKTLLVSKFIEDAC 302

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
           +          E +   +        +            ++ + P++   E  L+I    
Sbjct: 303 RNKERAILFAYEESRAQLLRNATSWGIDFEQMEQDGLLKIICAYPESTGLEDHLQIIKTE 362

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       + IDS++AL          G S          Q +  +T    + +    F 
Sbjct: 363 ISQFKPSRMAIDSLSALA--------RGVSH-----NAFRQFVIGVTGYAKQEEIAGFFT 409

Query: 201 N 201
           N
Sbjct: 410 N 410



 Score = 43.3 bits (100), Expect = 0.055,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 37 SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
          S GS    ++ + +G  G D     GG P GR   I G   +GKT  +LH +  
Sbjct: 6  SSGSPQMQVQKLPTGIEGFDDVC-HGGLPIGRSTLISGTSGTGKTVFSLHFLHN 58


>gi|312194272|ref|YP_004014333.1| DNA repair protein RadA [Frankia sp. EuI1c]
 gi|311225608|gb|ADP78463.1| DNA repair protein RadA [Frankia sp. EuI1c]
          Length = 507

 Score = 44.4 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G ++ + G    GK+TL L   A+S + G     V  E ++ 
Sbjct: 113 STGVDELDRVLG-GGVVPGAVILLAGEPGVGKSTLLLEVAARSAQAGHRALVVTGEESVA 171

Query: 109 SIYARK 114
            +  R 
Sbjct: 172 QVRLRA 177


>gi|183220184|ref|YP_001838180.1| DNA repair protein RadA [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189910304|ref|YP_001961859.1| DNA repair protein RadA [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167774980|gb|ABZ93281.1| ATP-dependent serine protease [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167778606|gb|ABZ96904.1| DNA repair protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Paris)']
          Length = 455

 Score = 44.4 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 50/279 (17%), Positives = 106/279 (37%), Gaps = 28/279 (10%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   LD+ LG GG   G +V + G    GK+TL L         G        E A   
Sbjct: 77  TGFSELDLVLG-GGIVPGSLVLVGGEPGVGKSTLVLEIAKNIANQGTVLYISGEESASQI 135

Query: 110 -IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            + A+++GV  +N+L+S     E   E    ++      ++ IDS+  +   + +     
Sbjct: 136 GLRAKRMGVTSENILLSS----EVYAENIAQMISDIKPKVVFIDSIQTIIKESLVNQAGT 191

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
            +     +++  +  ++          + +F+     K G + G        + + ++  
Sbjct: 192 ITQLRESSQVFLETAKR--------TSVPIFLIGHITKDGQIAGPKVLEHLVDTVLYFEG 243

Query: 229 VRLDIRRV-GSIKDKDSITGNQTRVKVVKNKMASP------FKQVEFDIMYGE--GISFF 279
            R +  R+  ++K++    G+    ++V   ++        F   E +   G        
Sbjct: 244 DRFNYYRILRAVKNRFGAVGDTAIFEMVLGGLSQVLDRHRLFISPETEERSGSVLSSVME 303

Query: 280 GELIDLGVKASIVDKSGAWFSFKG-QRLGQGRENSKIFL 317
           G         ++V KS    S+   +R+ +G +N ++ L
Sbjct: 304 GSRAISVEVQALVTKS----SYGQARRMAEGLDNRRVIL 338


>gi|116071240|ref|ZP_01468509.1| circadian clock protein KaiC [Synechococcus sp. BL107]
 gi|116066645|gb|EAU72402.1| circadian clock protein KaiC [Synechococcus sp. BL107]
          Length = 501

 Score = 44.4 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 60/181 (33%), Gaps = 30/181 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG   LD   G GGF K  I+   G   +GKT L    I  + 
Sbjct: 237 MRLTQRSSNV----RVSSGVPRLDEMCG-GGFFKDSIILATGATGTGKTMLVSKFIEDAC 291

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
           +          E +   +        +            ++ + P++   E  L+I    
Sbjct: 292 RNKERAILFAYEESRAQLMRNGTSWGIDFEQMEQDGLLKIICAYPESTGLEDHLQIIKTE 351

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       + IDS++AL          G S          Q +  +T    + +    F 
Sbjct: 352 ISEFKPSRMAIDSLSALA--------RGVSH-----NAFRQFVIGVTGYAKQEEIAGFFT 398

Query: 201 N 201
           N
Sbjct: 399 N 399



 Score = 41.4 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++ +++G  G D     GG P GR   I G   SGKT L+LH +  
Sbjct: 2  QVQKLATGIEGFDDVC-HGGLPIGRSTLISGTSGSGKTVLSLHFLHN 47


>gi|256787043|ref|ZP_05525474.1| DNA repair protein RadA [Streptomyces lividans TK24]
 gi|289770936|ref|ZP_06530314.1| DNA repair protein RadA [Streptomyces lividans TK24]
 gi|289701135|gb|EFD68564.1| DNA repair protein RadA [Streptomyces lividans TK24]
          Length = 469

 Score = 44.4 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 5/129 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G +V + G    GK+TL L   A+S        +V  E +  
Sbjct: 74  STGVPELDRVLG-GGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESAS 132

Query: 109 SIYARKLGVD-LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
            +  R   +  + + L    +T    L      + +    ++++DSV  +          
Sbjct: 133 QVRLRADRIHAIDDHLYLAAETD---LAAVLGHLDAVKPSLLILDSVQTVASPEIDGAPG 189

Query: 168 GESLPGMQA 176
           G +     A
Sbjct: 190 GMAQVREVA 198


>gi|223937198|ref|ZP_03629105.1| putative circadian clock protein, KaiC [bacterium Ellin514]
 gi|223894220|gb|EEF60674.1| putative circadian clock protein, KaiC [bacterium Ellin514]
          Length = 336

 Score = 44.4 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 6/118 (5%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G  G D   G GG P+ R   + G   SGK+  AL ++ +  + G     V        
Sbjct: 15  TGIPGFDEITG-GGLPENRTTLVMGGPGSGKSVFALQSLVEEVRRGEAGVLV-----SFQ 68

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
              R++  +         +  +  L I D  +R    + I +     L     +  +M
Sbjct: 69  ESPRQIVENAATFGWDLAELEKDKLVILDARIRPNTFNSIELYLSGMLAGIRVVANEM 126


>gi|20093479|ref|NP_613326.1| hypothetical protein MK0039 [Methanopyrus kandleri AV19]
 gi|34098606|sp|Q8TZ97|Y039_METKA RecName: Full=UPF0273 protein MK0039
 gi|19886305|gb|AAM01256.1| RecA-superfamily ATPase implicated in signal transduction
           [Methanopyrus kandleri AV19]
          Length = 252

 Score = 44.4 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 85/253 (33%), Gaps = 42/253 (16%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E VS+G  G+D  L  GG P+   V + G   +GKT  +   I    + G    FV  
Sbjct: 2   AVERVSTGIPGMDEVLN-GGIPERNAVLLTGGPGTGKTIFSQQFIWAGLEEGEPGVFVTL 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR------SGAVDIIVIDSVAAL 157
           E      +  ++  +++    +  +  E+ L              S     +V D   A 
Sbjct: 61  E-----EHPVQVRKNVEGFGWNFREYEEEGLLAVVDAFTGGIGRASEYEKYVVKDPTDAS 115

Query: 158 TPRAEIEGDMGESLPGMQA------------RLMSQALRKLTSSISRSKCILVFINQMRM 205
                I   + +      A             +  + + +L   ++   C  + +NQ+  
Sbjct: 116 ELIGVIRQAVNDVEAKRVAIDSVTPLYIDKPSVARRIMFRLKRMLAGLGCTSILVNQIAA 175

Query: 206 KIGVMFGSPETTTGGNALKFYS--SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
                    E   GG  ++      +RLD+       D+      ++ +       A   
Sbjct: 176 H--------ERGFGGPGVEHAVDGIIRLDL-------DEVEGRLWRSLIVWKMRGTAHSM 220

Query: 264 KQVEFDIMYGEGI 276
           ++  F+I   EGI
Sbjct: 221 RRHPFEIT-DEGI 232


>gi|21221780|ref|NP_627559.1| DNA repair protein RadA [Streptomyces coelicolor A3(2)]
 gi|4585583|emb|CAB40851.1| putative DNA repair protein [Streptomyces coelicolor A3(2)]
          Length = 469

 Score = 44.4 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 5/129 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G +V + G    GK+TL L   A+S        +V  E +  
Sbjct: 74  STGVPELDRVLG-GGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESAS 132

Query: 109 SIYARKLGVD-LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
            +  R   +  + + L    +T    L      + +    ++++DSV  +          
Sbjct: 133 QVRLRADRIHAIDDHLYLAAETD---LAAVLGHLDAVKPSLLILDSVQTVASPEIDGAPG 189

Query: 168 GESLPGMQA 176
           G +     A
Sbjct: 190 GMAQVREVA 198


>gi|307111779|gb|EFN60013.1| hypothetical protein CHLNCDRAFT_133185 [Chlorella variabilis]
          Length = 368

 Score = 44.4 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 31/59 (52%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
             G   +D  L  GG   G++VE+ G  +SGKT L L   AQ+ ++     +VD  +AL
Sbjct: 61  PPGCSSIDTELLRGGMRGGQMVEVCGESASGKTQLCLAAAAQAARSSQRVVYVDTSNAL 119


>gi|302422918|ref|XP_003009289.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
 gi|261352435|gb|EEY14863.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
          Length = 392

 Score = 44.4 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 28/100 (28%)

Query: 10 VDKSKALEAALSQIQRVYGKGAIMQL--GSQGSIFEGIE-----VVSSGSLGLDIALGI- 61
          +DK  ++    SQ +  +   A  +L   S     E ++      VS+G   LD ALG  
Sbjct: 1  MDKYHSIH---SQDEASFDLTATHRLPTVSAADALEDLDDATSRYVSTGLPDLDEALGSA 57

Query: 62 -----------------GGFPKGRIVEIYGPESSGKTTLA 84
                           GG P+G++ EI+GP   GKT L 
Sbjct: 58 SAACDDHHRPTAASKRAGGIPRGQVAEIWGPPGVGKTALG 97


>gi|110349615|gb|ABG73282.1| putative DMC1 protein [Leucoagaricus sp. 1039]
          Length = 83

 Score = 44.4 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 17 EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
          EAA   +   +  G            + + ++S+GS  +D  LG GG     I E+YG  
Sbjct: 1  EAAHKILGSSFATGI-----EVQERRKRVHIISTGSKSVDAILG-GGLMSQSITEVYGEF 54

Query: 77 SSGKTTLALHTIAQSQ 92
           +GKT +A      +Q
Sbjct: 55 RTGKTQMAHTMSVVAQ 70


>gi|110597416|ref|ZP_01385703.1| DNA repair protein RadA [Chlorobium ferrooxidans DSM 13031]
 gi|110340960|gb|EAT59431.1| DNA repair protein RadA [Chlorobium ferrooxidans DSM 13031]
          Length = 455

 Score = 44.4 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 5/110 (4%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   LD  LG GG  +   V + G    GK+TL L    +           +       
Sbjct: 72  TGIGELDRVLG-GGLMQASAVLVGGEPGIGKSTLMLQLAPRLAPAKVLYISGEESPNQIR 130

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             A +L +  +NL +      E+ LEI    +      +++IDS+  +  
Sbjct: 131 ERAERLSIRAENLWLIPEVNLERILEI----IEREKPALVIIDSIQTIYS 176


>gi|21262969|gb|AAM44816.1|AF508222_1 DMC1 [Dreissena polymorpha]
          Length = 155

 Score = 44.4 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 54/159 (33%), Gaps = 23/159 (14%)

Query: 78  SGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKLGVD--------LKNLL 123
           +GKT L+      +Q       TGG   F+D E+       R +           L N+L
Sbjct: 1   TGKTQLSHTLCVTAQLPGAKGYTGGKVVFIDTENTSRPDRLRDIADRFNLDQSAVLDNVL 60

Query: 124 ISQPDTGEQALEITDM-----LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
            ++  T E   E+ D         SG   ++++DS+ AL          G      + + 
Sbjct: 61  YARAYTSEHQYELLDYVAAKFYEESGVFKLLIVDSIMALFR----VDFSGRGELADRQQK 116

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
           ++Q L KL          +   NQM    G         
Sbjct: 117 LAQMLSKLQKISEEYNVAVFITNQMTADPGAAMTFTADP 155


>gi|88705741|ref|ZP_01103451.1| conserved hypothetical protein [Congregibacter litoralis KT71]
 gi|88700254|gb|EAQ97363.1| conserved hypothetical protein [Congregibacter litoralis KT71]
          Length = 315

 Score = 44.4 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 7/142 (4%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP-ESSGKTT 82
            + Y  GA     + G +    + + +G   LD  L   G+P G  +E+       G   
Sbjct: 96  NKQYSDGA-----ANGDLHHH-QRIPTGFGALDARLCEQGWPLGTCIEVMSDASGMGAMG 149

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L  +    +     AF+   +   +      GVD + +L+  P   E+ L  T+  +R
Sbjct: 150 LFLPAMENLSQQERWQAFIAPPYTPYAPLLAARGVDTQKVLLVHPREREELLWSTEQALR 209

Query: 143 SGAVDIIVIDSVAALTPRAEIE 164
           SG   ++     +     AE+ 
Sbjct: 210 SGTCSVVFSWLGSGEYRYAELR 231


>gi|254507580|ref|ZP_05119713.1| RecA/RadA recombinase [Vibrio parahaemolyticus 16]
 gi|219549467|gb|EED26459.1| RecA/RadA recombinase [Vibrio parahaemolyticus 16]
          Length = 225

 Score = 44.4 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 4/119 (3%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL-HTIAQSQ 92
            L       E  +  ++G   LD  L  GGFPK  +VE+  P+  G+  L + H    SQ
Sbjct: 13  WLWQGNQTPESQDYYATGYSLLDQKL-EGGFPKHGVVELQSPQGIGELRLLIPHLQQTSQ 71

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           +      F+     L + +    G+D    L+  P + ++AL   +  +RSGA   +++
Sbjct: 72  ER--LAVFIQPPGYLCAQHLASQGIDCNKALLIYPKSQKEALWAAEQCLRSGACSNVLL 128


>gi|114569758|ref|YP_756438.1| DNA repair protein RadA [Maricaulis maris MCS10]
 gi|114340220|gb|ABI65500.1| DNA replication and repair protein RadA [Maricaulis maris MCS10]
          Length = 458

 Score = 44.4 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 13/172 (7%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LGS+      ++   SG   LD   G GG   G  + + G    GK+TL L  +AQ  ++
Sbjct: 63  LGSESPEPARLQ---SGISELDRVCG-GGLVPGSAILVGGDPGIGKSTLLLQMMAQIARS 118

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
                +V  E A+D +  R   + L +  +S     E +L      +++   DI+VIDS+
Sbjct: 119 EARAIYVSGEEAIDQVRRRARRLGLADAPVSLAS--ETSLNDILDGLKAEKPDIVVIDSI 176

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
             +            +     A+       +L     +S C ++ +  +   
Sbjct: 177 QTVWSDQLAAAPGTVAQVRACAQ-------ELVRFAKKSNCTVILVGHVTKD 221


>gi|126666709|ref|ZP_01737686.1| predicted repair protein [Marinobacter sp. ELB17]
 gi|126628754|gb|EAZ99374.1| predicted repair protein [Marinobacter sp. ELB17]
          Length = 459

 Score = 44.4 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 81/223 (36%), Gaps = 20/223 (8%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+G    D  LG GG  +G  V + G   +GK+TL L  +     +  +  +V  E +
Sbjct: 75  RLSTGMAEFDRVLG-GGLVEGSAVLMGGHPGAGKSTLLLQAVCNLASS-VSALYVTGEES 132

Query: 107 LDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
           L  +   A++LG+   +L +    + E+ L+I    V      I+VIDS+  +       
Sbjct: 133 LQQVAMRAKRLGLPTSDLKLLSETSVERLLQI----VEVEKPRILVIDSIQVMHVADSES 188

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS--PETTTGGNA 222
                S     A         LT    ++  IL+ +  +     +               
Sbjct: 189 APGSVSQVRESAAF-------LTRFAKQTGTILLLVGHVTKDGSLAGPKVLEHMIDCSIL 241

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           L+  S  R    R   IK++     N+  V  +  +     K 
Sbjct: 242 LEGSSDSRYRTLRG--IKNRFGAV-NELGVFAMLEQGLKEVKN 281


>gi|78044393|ref|YP_361152.1| DNA repair protein RadA [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996508|gb|ABB15407.1| DNA repair protein RadA [Carboxydothermus hydrogenoformans Z-2901]
          Length = 444

 Score = 44.4 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 100/273 (36%), Gaps = 16/273 (5%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           E  L++ + V+G+  +  +G    +    +  S+G   LD  LG GG   G ++ + G  
Sbjct: 34  EKVLAKGKAVFGE--VEPVGISKILTGETDRFSTGFGELDRVLG-GGIVAGSLILLGGDP 90

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
             GK+TL L    +  +      +V  E +   I  R   +++   +   P T    +E 
Sbjct: 91  GIGKSTLLLQLAGKVGQKQK-VLYVSGEESPAQIKLRAERLNISGEIDLLPHTNVAEIE- 148

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
              +   G  ++I++DS+  +            +     A    +        +S+ K  
Sbjct: 149 --EVAVKGGYELIIVDSIQTMYLPELGSAPGTVTQVRESAGRFMR--------LSKEKNK 198

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR-VGSIKDKDSITGNQTRVKVV 255
            +F+     K G + G        + + +    R +  R + S+K++   T      ++V
Sbjct: 199 TIFLIGHVTKDGYLAGPRVMEHMVDVVLYLEGERHNTFRLLRSVKNRFGSTNELGIFEMV 258

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288
              +       EF I         G  + + ++
Sbjct: 259 GEGLKEVSNPSEFFISLDRQHDCIGSAVVVSLE 291


>gi|303248811|ref|ZP_07335062.1| DNA repair protein RadA [Desulfovibrio fructosovorans JJ]
 gi|302489823|gb|EFL49753.1| DNA repair protein RadA [Desulfovibrio fructosovorans JJ]
          Length = 446

 Score = 44.4 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 62/152 (40%), Gaps = 12/152 (7%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +G  GLD  LG GG   G  V + G    GK+TL L     +  +G    +V  E +L 
Sbjct: 69  PTGIDGLDRVLG-GGLTPGGAVLLGGEPGIGKSTLLLQLAGLAAASGRRVVYVSGEESLP 127

Query: 109 SI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
            +   A +LGV  + LL +       A++I      + A D++++DSV  +         
Sbjct: 128 QLKARAERLGVLHEGLLAAATTDAGAAVDILGA---TPAPDLVIVDSVQTMHVSGVEGAP 184

Query: 167 MGESLP------GMQARLMSQALRKLTSSISR 192
              S         ++A    QA   L   +++
Sbjct: 185 GSVSQVRGVAASCVEAAKRGQACLMLVGHVTK 216


>gi|282899115|ref|ZP_06307096.1| Possible circadian clock protein KaiC [Cylindrospermopsis
           raciborskii CS-505]
 gi|281196031|gb|EFA70947.1| Possible circadian clock protein KaiC [Cylindrospermopsis
           raciborskii CS-505]
          Length = 517

 Score = 44.4 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 60/181 (33%), Gaps = 30/181 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG   LD   G GGF K  I+   G   +GKT L    I    
Sbjct: 254 MRLTQRSSNV----RVSSGVNTLDEMCG-GGFFKDSIILATGATGTGKTLLVSKFIQDGC 308

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
            +G        E +   +        +            ++ + P++   E  L+I    
Sbjct: 309 VSGERAILFAYEESRAQLSRNAYSWGIDFEELERQGLLKIICTYPESTGLEDHLQIIKSE 368

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 369 IADFKPARIAIDSLSALA-------------RGVSNNAFRQFVIGVTGYAKQEEITGFFT 415

Query: 201 N 201
           N
Sbjct: 416 N 416



 Score = 39.1 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 12/124 (9%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT----IAQSQKTGGTCA 99
           G+E + +   G D  +  GG P GR   + G   +GKT L+L      I    + G    
Sbjct: 19  GVEKIRTMIEGFDD-ISHGGLPIGRTTLLSGTSGTGKTLLSLQFLYNGITHFDEPGVFVT 77

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F ++   +    A   G +L+ L+       +  L I D        DI+    ++AL  
Sbjct: 78  FEESPSDIIKN-AHIFGWNLQKLIE------QGKLFILDASPDPEGQDIVGNFDLSALIE 130

Query: 160 RAEI 163
           R + 
Sbjct: 131 RLQY 134


>gi|302553211|ref|ZP_07305553.1| DNA repair protein RadA [Streptomyces viridochromogenes DSM 40736]
 gi|302470829|gb|EFL33922.1| DNA repair protein RadA [Streptomyces viridochromogenes DSM 40736]
          Length = 469

 Score = 44.4 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 7/130 (5%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G +V + G    GK+TL L   A+S        +V  E +  
Sbjct: 74  STGVPELDRVLG-GGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESAS 132

Query: 109 SIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
            +  R  ++G    +L ++        L   D +  S    ++++DSV  +         
Sbjct: 133 QVRLRADRIGAIDDHLYLAAETDLAAVLGHLDAVKPS----LLIMDSVQTVASPEIDGAP 188

Query: 167 MGESLPGMQA 176
            G +     A
Sbjct: 189 GGMAQVREVA 198


>gi|254167323|ref|ZP_04874175.1| KaiC domain protein [Aciduliprofundum boonei T469]
 gi|197623586|gb|EDY36149.1| KaiC domain protein [Aciduliprofundum boonei T469]
          Length = 289

 Score = 44.4 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 1/79 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + +G LGLD  L  GG        I G   +GKTT A   I +    G  C F+  + 
Sbjct: 3   EKIKTGILGLDAPL-DGGLMNKSSTVIIGSTGAGKTTFATQFIRRGLLDGQDCIFISLDE 61

Query: 106 ALDSIYARKLGVDLKNLLI 124
             + I    L +   ++  
Sbjct: 62  NKEQIIRDSLNMGWDDITY 80


>gi|76803183|ref|YP_331278.1| KaiC-like transcriptional regulator 3 [Natronomonas pharaonis DSM
           2160]
 gi|76559048|emb|CAI50646.1| probable KaiC-like transcriptional regulator 3 [Natronomonas
           pharaonis DSM 2160]
          Length = 231

 Score = 44.4 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 1/74 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VSSG  G D  L  GGFP GR+  + GP  SGKTT +   +    K G +C F+    +
Sbjct: 2   RVSSGVAGFDD-LVAGGFPVGRLYVLSGPPGSGKTTFSAQFLVDGAKNGESCLFISMHES 60

Query: 107 LDSIYARKLGVDLK 120
              I     G D+ 
Sbjct: 61  RADIAHDMSGYDIG 74


>gi|51244571|ref|YP_064455.1| DNA repair protein RadA [Desulfotalea psychrophila LSv54]
 gi|50875608|emb|CAG35448.1| probable DNA repair protein (RadA) [Desulfotalea psychrophila
           LSv54]
          Length = 451

 Score = 44.4 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 3/124 (2%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           Q S  + +  +++     D  LG GG   G ++ I G    GK+TL LH +++       
Sbjct: 56  QRSSEQSLRRLATEIEEFDRVLG-GGILPGAMILIGGEPGIGKSTLLLHILSEIACQELP 114

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
             ++  E ++  I  R + + + N LI      E  +E    +VR     ++VIDS+  L
Sbjct: 115 VIYISGEESVGQIEMRAMRLGIFNPLIYLAT--ENRVEAIVEIVREMRPALLVIDSIQTL 172

Query: 158 TPRA 161
              A
Sbjct: 173 VSAA 176


>gi|306823525|ref|ZP_07456900.1| DNA repair protein RadA [Bifidobacterium dentium ATCC 27679]
 gi|309802987|ref|ZP_07697088.1| DNA repair protein RadA [Bifidobacterium dentium JCVIHMP022]
 gi|304553232|gb|EFM41144.1| DNA repair protein RadA [Bifidobacterium dentium ATCC 27679]
 gi|308220454|gb|EFO76765.1| DNA repair protein RadA [Bifidobacterium dentium JCVIHMP022]
          Length = 469

 Score = 44.4 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 50/150 (33%), Gaps = 9/150 (6%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTGG 96
           E +  + +G    D  LG G  P G +  I G    GK+TL L T         + +   
Sbjct: 75  ENMSRIPTGFSEFDRVLGSGIVP-GSVTLIAGEPGIGKSTLLLETAGNVAREVANHRDRN 133

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
              +V  E +   +  R   ++     +    T +  L     L+      + ++DS   
Sbjct: 134 VVLYVSGEESQAQVRMRAFRINAIEPNMLLAATTD--LATVLGLIEQVRPALAIVDSAQT 191

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           +  +       G +     A  +    + L
Sbjct: 192 IVSQDVDGISGGSTQVREVASALIDTAKTL 221


>gi|91779605|ref|YP_554813.1| hypothetical protein Bxe_B0484 [Burkholderia xenovorans LB400]
 gi|91692265|gb|ABE35463.1| RAD55 [Burkholderia xenovorans LB400]
          Length = 491

 Score = 44.4 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           G   LD  LG GGF +G    + GP   GKT L L  +A     G  C ++
Sbjct: 251 GLPHLDALLG-GGFAQGSTTTLIGPSGVGKTLLCLQFLAAGIARGERCVYL 300


>gi|302671602|ref|YP_003831562.1| DnaB C-terminal domain-containing protein [Butyrivibrio
           proteoclasticus B316]
 gi|302396075|gb|ADL34980.1| DnaB C-terminal domain-containing protein [Butyrivibrio
           proteoclasticus B316]
          Length = 248

 Score = 44.4 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 43/115 (37%), Gaps = 4/115 (3%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG---TCAF 100
            I  + +G   LD  LG GG  +G +  + G    GK+   +  +  + +  G   T   
Sbjct: 14  NINPIITGIRPLDHVLG-GGIHRGELTVVAGRPGMGKSAFMMELMLNACREEGIKATAFS 72

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
           ++           +L      +L  +  T +  +EIT   +     +   ++ ++
Sbjct: 73  LEMSRDRYKKRLMELDDKASEMLDQKKITIDDTIEITIDEIERKCREKKTMNGIS 127


>gi|149913823|ref|ZP_01902355.1| DNA repair protein RadA [Roseobacter sp. AzwK-3b]
 gi|149812107|gb|EDM71938.1| DNA repair protein RadA [Roseobacter sp. AzwK-3b]
          Length = 454

 Score = 44.4 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 60/168 (35%), Gaps = 5/168 (2%)

Query: 25  RVYG--KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           +  G  +G  + L    S         SG   LD  LG G  P   I+ + G    GK+T
Sbjct: 45  KSLGAKRGTPITLSDLSSEEAPPPRTVSGLGELDRVLGGGLVPASAIL-VGGDPGIGKST 103

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L   A+  + G    +V  E A   +  R   + L    +         L      + 
Sbjct: 104 LLLQAAARFAQAGLKTIYVSGEEASAQVRMRAQRLGLAQAPVKLAAATS--LRDILTTLE 161

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           + A D+++IDS+  +            S     A  ++   ++  +S+
Sbjct: 162 AEAPDLVIIDSIQTVWADHVDSAPGSVSQVRAAAHELTSFAKRKGASV 209


>gi|258627884|gb|ACV85564.1| truncated RecA-like protein [Anaplasma phagocytophilum]
          Length = 34

 Score = 44.4 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 22/28 (78%)

Query: 8  NIVDKSKALEAALSQIQRVYGKGAIMQL 35
          +  DK +A +AA+ QI+R +G+G+IM+L
Sbjct: 7  SPSDKQRAADAAIGQIERAFGRGSIMRL 34


>gi|328950887|ref|YP_004368222.1| DNA repair protein RadA [Marinithermus hydrothermalis DSM 14884]
 gi|328451211|gb|AEB12112.1| DNA repair protein RadA [Marinithermus hydrothermalis DSM 14884]
          Length = 430

 Score = 44.4 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 82/234 (35%), Gaps = 30/234 (12%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           I++L       E     SSG   +D  LG G  P G ++ + G    GK+TL L    + 
Sbjct: 50  ILRLADVPPNEE--VRFSSGVGEVDRVLGGGFVP-GEVLLLGGEPGVGKSTLLLQVADRL 106

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
            ++G    +V  E +L  +  R   + +         + E  L   + L+ +   D +VI
Sbjct: 107 ARSGKRVLYVAGEESLSQVRLRAGRLGVSG---DLTLSRETRLAALEALLEAERPDAVVI 163

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DS+  +    E +G  G          + QA + LT    R     + +  +        
Sbjct: 164 DSIQTI----EADGAPG------SLVAVRQATQALTGLAKRLGITALLVGHVT------- 206

Query: 212 GSPETTTGGNALKFYSSVRLDIRRVG------SIKDKDSITGNQTRVKVVKNKM 259
                  G   ++      L +   G      S K++    G     ++ +  +
Sbjct: 207 -KEGVVAGPKVIEHVVDATLYLETAGLFRVLRSTKNRFGPVGEVGVFRMEEAGL 259


>gi|291405591|ref|XP_002719552.1| PREDICTED: RAD51-like 3 [Oryctolagus cuniculus]
          Length = 315

 Score = 44.4 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 61/208 (29%), Gaps = 19/208 (9%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGT 97
             +     ++S+G   LD  L   G   G + EI G   SGKT + L   A         
Sbjct: 59  EELKSSTAILSTGIRSLDKLL-DAGLYTGEVTEIVGAPGSGKTQVCLCVTAHVAHGLQQN 117

Query: 98  CAFVDAEHALDSIY-----------ARKLGVDLKNLLISQPDTGEQALEITDML---VRS 143
             ++D+   L +               +    L+ + +++     Q L++       V  
Sbjct: 118 VLYIDSNGGLTASRLLQLLQARTQDEEEQAAALQRIQVARAFDIFQMLDVLQDFRGTVAQ 177

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
                     V  +     +   +          LM Q  R+L +        +V  N +
Sbjct: 178 QVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLARDLGLAVVVTNHV 237

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRL 231
                           G +  F  + R+
Sbjct: 238 TRD---RDSGKLKPALGRSWSFVPNTRI 262


>gi|126290417|ref|XP_001373207.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 379

 Score = 44.4 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 63/188 (33%), Gaps = 34/188 (18%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---GGT---CAFVDAE 104
           G    +  L  GG P   I E+ G  S+GKT + L      Q     GG      ++  E
Sbjct: 85  GCPVFNRLL-QGGLPLVGITELVGQSSAGKTQIGLQLSLCVQYPYEYGGLESGAIYICTE 143

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI---------------- 148
                   ++L      L    P    + ++  + +    A DI                
Sbjct: 144 DVFPDKRLQQLIALQHQLRTDVPQDVIKKIKFGNSIFIEHAADIDALFECVTKRAPILLS 203

Query: 149 ------IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                 I+IDS+AAL  R E     G      +A+ +     KL    S  +  ++ INQ
Sbjct: 204 RGMVRLIIIDSIAALF-RCEF----GIQHSITKAKYLQTLGAKLHQLSSGFQSPVLCINQ 258

Query: 203 MRMKIGVM 210
           +   +   
Sbjct: 259 VTDTVDER 266


>gi|197105004|ref|YP_002130381.1| DNA repair protein RadA [Phenylobacterium zucineum HLK1]
 gi|196478424|gb|ACG77952.1| DNA repair protein RadA [Phenylobacterium zucineum HLK1]
          Length = 455

 Score = 44.4 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 3/140 (2%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
             +++G    D   G GG   G  + + G    GK+TL L   A + + G  CA++  E 
Sbjct: 69  PRIATGVEEFDRVCG-GGVVPGSAILLGGDPGVGKSTLLLQVAASAARRGARCAYISGEE 127

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           A++ +  R   + L +  +      E +L      +++   D++VIDS+  L   A   G
Sbjct: 128 AVEQVRGRAQRMGLADAPVKLAA--ETSLRAITDGLKAEDFDLVVIDSIQTLWSDAHEAG 185

Query: 166 DMGESLPGMQARLMSQALRK 185
               +     A  + +  +K
Sbjct: 186 PGSVTQVRAAAGELVRLAKK 205


>gi|323339416|ref|ZP_08079699.1| DNA repair protein RadA [Lactobacillus ruminis ATCC 25644]
 gi|323093181|gb|EFZ35770.1| DNA repair protein RadA [Lactobacillus ruminis ATCC 25644]
          Length = 457

 Score = 44.4 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 5/121 (4%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
                +    + + +  L+  LG GG     +V I G    GK+T+ L    +    GG 
Sbjct: 62  DAISTKETPRIVTKNAELNRVLG-GGIVPSSMVLIGGDPGIGKSTMLLQLSGELADMGGK 120

Query: 98  CAFVDAEHALDSIYARKLGVDLKNL-LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
             +V  E + + I  R   + +        P+T  Q++      V     D +VIDSV  
Sbjct: 121 VLYVSGEESANQIKMRADRLGVGGSEFYLYPETDMQSI---LQNVEDLKPDYVVIDSVQT 177

Query: 157 L 157
           +
Sbjct: 178 M 178


>gi|14520388|ref|NP_125863.1| hypothetical protein PAB0113 [Pyrococcus abyssi GE5]
 gi|5457603|emb|CAB49094.1| recA superfamily ATPase implicated in signal transduction
           [Pyrococcus abyssi GE5]
          Length = 251

 Score = 44.4 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 56/167 (33%), Gaps = 6/167 (3%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG +  I   +E + +G +     L  GG PKG ++ + G   +GK+T     +    K 
Sbjct: 4   LGEE-KIERTVERIPTGII---DDLISGGIPKGSVILVIGDPKAGKSTFLTQFVYNQVKV 59

Query: 95  G--GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           G       VD         A   G +    L  +    +   +      +    D IV D
Sbjct: 60  GTPVIGVLVDISKYEFISNALDFGWEFTPYLDDRIILLDAYTQRLRKTPKFSFEDSIVGD 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
               +     I+    + L   ++  +   +  +T     +    ++
Sbjct: 120 LSNTINLLDAIKDTTLKILSTTKSDGIVGFVSSMTPIFFETSKKEIY 166


>gi|46107922|ref|XP_381020.1| hypothetical protein FG00844.1 [Gibberella zeae PH-1]
          Length = 445

 Score = 44.4 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 62/206 (30%), Gaps = 24/206 (11%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-----KTGGTCAFV 101
           V+S+   GLD  LG GG P G + E  G   +GKT   L      Q       G    ++
Sbjct: 88  VISTLDDGLDAILG-GGVPVGAVTEFTGESGAGKTQALLSLCLAVQLPSPHGLGREALYI 146

Query: 102 DAEHALD--------------SIYARKLGVDLKNLLISQPD---TGEQALEITDMLVRSG 144
             E  +                 Y       L  +  +      T +  L+    ++ S 
Sbjct: 147 STEATMATSRLAQMLKSNPIIQQYDVDDRPSLDAIHSTITPDLETQDHILDFQVPVLLSR 206

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
               ++I    A   RAE E      S    ++  + +    L     R    +V  NQ+
Sbjct: 207 HRIGLIILDSVAANYRAEFERQGTHGSNMAARSAELVRLGALLRDLARRHNVAVVVANQV 266

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSV 229
             +              +     S +
Sbjct: 267 ADRFSSSSALRHVPPRSSGPVHESPL 292


>gi|126659421|ref|ZP_01730555.1| circadian clock protein KaiC [Cyanothece sp. CCY0110]
 gi|126619257|gb|EAZ89992.1| circadian clock protein KaiC [Cyanothece sp. CCY0110]
          Length = 504

 Score = 44.4 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 3/92 (3%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
           +Q +  + IE + +   G D  L  GG PKGR   + G   S KT  A   +A+  K G 
Sbjct: 2   TQENELDYIEKLETAIPGFDF-LSEGGLPKGRATLVAGTAGSSKTVFACQFLAEGIKRGE 60

Query: 97  TCAFVDAEHA--LDSIYARKLGVDLKNLLISQ 126
              FV  E          R  G ++    + +
Sbjct: 61  NGVFVTFEEPPKALRRNMRGFGWNIAQWELER 92



 Score = 44.1 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 53/131 (40%), Gaps = 13/131 (9%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            ++SGS  LD   G GGF +  I+ + G   +GKT +    +A        C     E +
Sbjct: 255 RITSGSHELDRMCG-GGFFRDSIILVSGATGTGKTLMVTEFMAGGVVNDERCLIFAFEES 313

Query: 107 LDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDMLVRSGAVDIIVIDSV 154
            + ++    G  +            ++   P+T   E  L      + +   + + +DS+
Sbjct: 314 REQLFRNATGWGVDFEEMEKQGKLKVVCRYPETTGLENHLINMKETIETFKPNRVAVDSL 373

Query: 155 AALTPRAEIEG 165
           +AL   + ++G
Sbjct: 374 SALERVSTLKG 384


>gi|38234541|ref|NP_940308.1| DNA repair protein RadA [Corynebacterium diphtheriae NCTC 13129]
 gi|38200804|emb|CAE50508.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
          Length = 463

 Score = 44.4 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 8/114 (7%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ--SQKTG---GTCAFVDA 103
           S+G   LD  LG G  P G +V + G    GK+TL L   ++   QK G    T  ++ A
Sbjct: 76  STGIGELDRVLGSGIVP-GSVVLLAGEPGVGKSTLLLEVASKWAQQKQGSSNRTALYITA 134

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           E +   +  R        L  S     E  L+I    V      +++IDSV  +
Sbjct: 135 EESAGQVRMRA--ERTGALQDSLYLAAESNLDIVFGHVEQIKPSLLIIDSVQTM 186


>gi|32477913|ref|NP_870907.1| hypothetical protein RB13180 [Rhodopirellula baltica SH 1]
 gi|32448470|emb|CAD77985.1| conserved hypothetical protein-putative RecA-superfamily ATPase
           implicated in signal transduction [Rhodopirellula
           baltica SH 1]
          Length = 511

 Score = 44.4 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 77/233 (33%), Gaps = 11/233 (4%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
              ++   +  +S+G+  LD  L  GG    R+  + G   +GKTTLAL  + +  + G 
Sbjct: 7   DDMTMHNPLPKISTGNPPLDDIL-HGGLTADRLYLVEGMPGTGKTTLALQFLLEGIRNGE 65

Query: 97  TCAFV-------DAEHALDSIYARKLGVDLKNLLISQP--DTGEQALEITDMLVRSGAVD 147
           T  +V       + E    S       +D+  L+ ++   D+  Q        +      
Sbjct: 66  TGLYVTLSETKQELEGVATSHGWSLDNIDIYELIDTKATEDSRLQYTMFEPSEIELSTTV 125

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
             V++ V  L P   +   + E     Q  L  +            +   V +      +
Sbjct: 126 DGVLERVKELQPTRVVFDSLSEMRLLSQGSLRYRRQILALKQFFVGRGCTVLLLDDYSGL 185

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSITGNQTRVKVVKNKM 259
                              S    + RR+  +K    S  G    +++V+  +
Sbjct: 186 DDQHLQSIAHGVIRLEHLLSDYGGERRRLRILKHRGTSFIGGAHDLRIVRGGL 238



 Score = 44.1 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 2/118 (1%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
            Q +      +V SG+   D  LG GG   G    + GP   GK+++AL     +     
Sbjct: 247 DQPTETVETHLVDSGNKEFDELLG-GGLNAGTSALLLGPAGVGKSSMALQFAIAAADRNE 305

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
                  E +  S++ R  G+   NL     +   Q + +    +       +V DSV
Sbjct: 306 RAVLFQFEESTQSLFVRAKGLGF-NLQQRVDEGLIQIINLIPGEITPSEFACLVRDSV 362


>gi|261886462|ref|ZP_06010501.1| DNA repair protein RadA [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 159

 Score = 44.4 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 18/114 (15%)

Query: 5   KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           KE++    S A    ++QI+                  E I   S+G   LD+ LG GG 
Sbjct: 45  KEISKPSVSTANAKPITQIE-----------------IEKISRQSTGDAELDLVLG-GGV 86

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
             G +V I G    GK+TL L   +    +G    +V  E +   I  R   +D
Sbjct: 87  VNGSLVLIGGSPGIGKSTLLLKIGSNLANSGEKVLYVSGEESSTQIKLRANRLD 140


>gi|304312032|ref|YP_003811630.1| DNA repair protein [gamma proteobacterium HdN1]
 gi|301797765|emb|CBL45987.1| DNA repair protein [gamma proteobacterium HdN1]
          Length = 453

 Score = 44.4 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 9/172 (5%)

Query: 17  EAALSQIQRVYGKGA---IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           +AA+S  +R    GA   + +L       E    +++G   LD  LG GG   G +V I 
Sbjct: 41  DAAISNPRRGGWTGAAQTVTRLSDVSIAHEP--RIATGLTELDRVLG-GGLVDGSVVLIG 97

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           G    GK+TL L T+    +  G   +V  E +L  +  R     L+  +       E +
Sbjct: 98  GDPGIGKSTLLLQTLTHLAELEG-ALYVTGEESLQQVALRA--RRLELPMQRLDLMAETS 154

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           +E            ++V+DS+  +          G S     A  + +  ++
Sbjct: 155 IENILATAAQEKPKVMVVDSIQTVFTETLSSAPGGVSQVRECAAALVRFAKQ 206


>gi|39951655|ref|XP_363544.1| hypothetical protein MGG_01470 [Magnaporthe oryzae 70-15]
 gi|145020689|gb|EDK04818.1| hypothetical protein MGG_01470 [Magnaporthe oryzae 70-15]
          Length = 363

 Score = 44.4 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 76/225 (33%), Gaps = 26/225 (11%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALG----------IGGFPKGRIVEIYGPESSGKTTLAL 85
             +    +    VS+G   LD  L           +GG  +G + EI+GP   GKT+L L
Sbjct: 30  AQEELTADPFRFVSTGLDVLDTLLAASKNDGRTRDLGGVQRGIVTEIWGPPGIGKTSLGL 89

Query: 86  HTIAQSQKTG--GTCAFVDAEHALDSIYARKLGVDL-KNLLISQPDTGEQALEITDML-- 140
             +         G C      H L  I   K   D+    +  +       + +      
Sbjct: 90  PRMLSPANDRWFGVC-----SHRLPDIIDTKHEPDVLDMFVHFECPELAHLIALLCRPNE 144

Query: 141 -VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
                   ++V+DS+ AL   A      G       A++   +   L    +     +V 
Sbjct: 145 LCVPLDTSLVVVDSLTALINHAYPRTFDG----RAAAKMSGGSKSALQKLAATRNLAVVI 200

Query: 200 INQMRMKIGVMFGSPETT-TGGNALKFYSSVRLDIRRVGSIKDKD 243
           ++Q   K+ +  G+        +  +   S R+ + R  S++   
Sbjct: 201 LSQCATKMQLERGAALIPAVNASWWEDGISTRIVLFRDWSMQSGS 245


>gi|312210425|emb|CBX90512.1| similar to DNA repair protein RAD57 [Leptosphaeria maculans]
          Length = 449

 Score = 44.4 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 49/217 (22%), Positives = 80/217 (36%), Gaps = 35/217 (16%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYG------KGAIMQLGSQGS----IFEGIEVVSS 50
           +  R ++   +  K  +A L  + R  G       G+   L S  +      E +  +S+
Sbjct: 41  VAKRAQLPAAELRKLADAVLLALHRQLGFGGGEVAGSSSFLASSTNNPDVSKERLGFIST 100

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-----KTGGTCAFVDAEH 105
               LD ALG GG P G +VEI G   +GKT + L  +  SQ       G +  ++  E 
Sbjct: 101 LDEELDAALG-GGIPPGYLVEITGESGAGKTQVLLTLLLASQLPPPLGLGKSAIYISTEA 159

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDML------------------VRSGAVD 147
            L +    +L  +   L             I  +                   V+   V 
Sbjct: 160 VLATTRLTQLLSNHPALASRPVAERPSLSRILSIQTPDLESQEHILRYQLPVAVKKHDVG 219

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           ++++DSVAA   RAE E           A+  +Q ++
Sbjct: 220 LVILDSVAA-NYRAEFEKKGPNGAAASMAKRGTQLVQ 255


>gi|147921243|ref|YP_684943.1| hypothetical protein RCIX117 [uncultured methanogenic archaeon
           RC-I]
 gi|110620339|emb|CAJ35617.1| conserved hypothetical protein [uncultured methanogenic archaeon
           RC-I]
          Length = 289

 Score = 44.4 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 70/232 (30%), Gaps = 13/232 (5%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++ + +G LGLD  L  GGF +     + G   +GKTT+AL  + +  + G    ++  E
Sbjct: 1   MKKLKTGILGLDSLL-DGGFNEHSATILVGSAGTGKTTMALQFLRKGLENGSDAIYITLE 59

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
                I      +  +++         +   +  +      +   + + +       E  
Sbjct: 60  EPRSQIIEEARNMGWEDIEQ-----YVEKGSLVFLEAAGKDLADFIKEELPRFVSEWEGS 114

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
                  P       ++        IS+       +  +   I     + E T     + 
Sbjct: 115 QARIVVDPLTPVIWANENKYDQRMLISQLFKETKRMGTVLSTIEEHGVTGEMTGSETIIP 174

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276
            Y +  +       +       GN+        +         +  + G GI
Sbjct: 175 MYLADTI-------LHISSVSMGNRMISIKKSRQSWHSENNFPYRFVLGIGI 219


>gi|332158348|ref|YP_004423627.1| hypothetical protein PNA2_0707 [Pyrococcus sp. NA2]
 gi|331033811|gb|AEC51623.1| hypothetical protein PNA2_0707 [Pyrococcus sp. NA2]
          Length = 251

 Score = 44.4 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 57/169 (33%), Gaps = 5/169 (2%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+  S+  I   +E V +G +     L  GG PKG +V + G   +GK+T     +    
Sbjct: 1   MEEFSEEKIERSVERVPTGII---DDLISGGIPKGSVVLVIGDPKAGKSTFLTQFVYNQL 57

Query: 93  KTG--GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           + G       VD         A + G +    L  +    +   +      +    + IV
Sbjct: 58  RNGIPVIGVLVDISKYEFISNALEFGWEFTPYLDEKIILLDAYTQRLRKTPKFSFEETIV 117

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
            D    L     I+    + L   +   +   +  +T     +    ++
Sbjct: 118 GDLSNTLNLLDAIKDTTLKILSTTKTDGIVGFISSMTPIFFETPKKEIY 166


>gi|327538029|gb|EGF24719.1| circadian clock protein, KaiC [Rhodopirellula baltica WH47]
          Length = 503

 Score = 44.4 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 2/118 (1%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
            Q +      +V SG+   D  LG GG   G    + GP   GK+++AL     +     
Sbjct: 239 DQPTETVETHLVDSGNKEFDELLG-GGLNAGTSALLLGPAGVGKSSMALQFAIAAADRNE 297

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
                  E +  S++ R  G+   NL     +   Q + +    +       +V DSV
Sbjct: 298 RAVLFQFEESTQSLFVRAKGLGF-NLQQRVDEGLIQIINLIPGEITPSEFACLVRDSV 354



 Score = 42.1 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99
           ++   +  +S+G+  LD  L  GG    R+  + G   +GKTTLAL  + +  + G T  
Sbjct: 2   TMHNPLPKISTGNPPLDDIL-HGGLTADRLYLVEGMPGTGKTTLALQFLLEGIRNGETGL 60

Query: 100 FV 101
           +V
Sbjct: 61  YV 62


>gi|325295521|ref|YP_004282035.1| DNA repair protein RadA [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065969|gb|ADY73976.1| DNA repair protein RadA [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 432

 Score = 44.4 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 83/256 (32%), Gaps = 30/256 (11%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E  E + SG    D  LG GG  KG +  + G    GK+T  L    +    G       
Sbjct: 63  ERAERILSGISEFDRVLG-GGIVKGSVSLLSGEPGIGKSTFLLQLANKFSDYGKVLYVTA 121

Query: 103 AEHALD-SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
            E     ++ A++L V   N+ +   +     LE     +       +V DS+  L    
Sbjct: 122 EESPEQVALRAKRLEVKSSNIYVLAENN----LEEISKQIEKIKPVFVVFDSIQTLFLPH 177

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
                   S     A  ++        ++S+S+ I  FI     K G +        G  
Sbjct: 178 IESAAGSVSQVRESAAFIT--------NLSKSEKITSFIVGHVTKEGTI-------AGPK 222

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE 281
            L+                 +     N    K +KN+  S  +   F++   +G+     
Sbjct: 223 VLEHIVDAVFQF--------EGDKGYNFRVFKSLKNRFGSTGELAVFEMT-EKGLREILN 273

Query: 282 LIDLGVKASIVDKSGA 297
             +  +    + K G+
Sbjct: 274 PSEFFLSERPIGKPGS 289


>gi|73669467|ref|YP_305482.1| flagellar accessory protein FlaH [Methanosarcina barkeri str.
           Fusaro]
 gi|72396629|gb|AAZ70902.1| flagella related protein FlaH [Methanosarcina barkeri str. Fusaro]
          Length = 262

 Score = 44.4 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 18/136 (13%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + +E +SSG+L +D  L  GG P G +  + G + SGK+      +  +         + 
Sbjct: 30  KPLEFISSGNLEIDRKL-EGGIPVGSLCLLEGAKDSGKSIFMQQIMWGALNQDKKVLALT 88

Query: 103 AEHALDSIY--ARKLGVDLKNLLIS---------------QPDTGEQALEITDMLVRSGA 145
            E    ++      L  D+ +  I                 P+  E  LEI    ++   
Sbjct: 89  TEKTSRNLLNNMESLKQDISDYFIIGRSKIFEINASDVEENPEISENLLEIMLECIKECE 148

Query: 146 VDIIVIDSVAALTPRA 161
            ++I+IDS+  L   A
Sbjct: 149 EELILIDSLTILAVNA 164


>gi|88704443|ref|ZP_01102157.1| DNA repair protein radA [Congregibacter litoralis KT71]
 gi|88701494|gb|EAQ98599.1| DNA repair protein radA [Congregibacter litoralis KT71]
          Length = 456

 Score = 44.4 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 8/144 (5%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +  + +G    D  LG GG   G  + + G   +GK+TL L              +V  
Sbjct: 71  EVRRIPTGMAEFDRVLG-GGLVPGSAILLGGNPGAGKSTLLLQACCGLASR-MPALYVTG 128

Query: 104 EHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           E +   I   A++L + L  L +      E  L   D         ++V+DS+  +    
Sbjct: 129 EESPQQIAMRAQRLSLPLDELKLMAETNVEAILAALDKHQPR----LLVVDSIQVVYSEE 184

Query: 162 EIEGDMGESLPGMQARLMSQALRK 185
                   S     A  +++A ++
Sbjct: 185 LSSAPGSVSQVRECAATLTRAAKQ 208


>gi|260912185|ref|ZP_05918739.1| DNA repair protein RadA [Prevotella sp. oral taxon 472 str. F0295]
 gi|260633712|gb|EEX51848.1| DNA repair protein RadA [Prevotella sp. oral taxon 472 str. F0295]
          Length = 462

 Score = 44.1 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 4/131 (3%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
            L+  LG GG  +G IV + G    GK+TL L TI +  +      +V  E +   +  R
Sbjct: 84  ELNRVLG-GGLVRGSIVLLGGEPGIGKSTLVLQTILRMPEK--RILYVSGEESTHQLKMR 140

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
              ++ +N+  +     E +LE   M V     D++V+DS+  +   A            
Sbjct: 141 ADRIE-ENVADNVIVLSENSLEKILMQVDEVKPDLLVVDSIQTIESEAIDSSPGSIVQVR 199

Query: 174 MQARLMSQALR 184
             A  + +  +
Sbjct: 200 ECASALLKFAK 210


>gi|78188749|ref|YP_379087.1| DNA repair protein RadA [Chlorobium chlorochromatii CaD3]
 gi|78170948|gb|ABB28044.1| DNA repair protein RadA [Chlorobium chlorochromatii CaD3]
          Length = 454

 Score = 44.1 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 48/129 (37%), Gaps = 7/129 (5%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
            + +L     +    + +++G   LD  LG GG  +   V + G    GK+TL LH   +
Sbjct: 55  TVQRLHD--VVPSEFQRITTGMGELDRVLG-GGLMQASAVLVGGEPGIGKSTLMLHLAPR 111

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
                      +         A +L +   NL +      E+ L + +         +++
Sbjct: 112 LAPAKVLYISGEESPNQIRERAERLAIRADNLWLVPEVNLERILSLLEH----EKPALVI 167

Query: 151 IDSVAALTP 159
           IDS+  +  
Sbjct: 168 IDSIQTIHS 176


>gi|227879315|ref|ZP_03997181.1| DNA repair protein RadA [Lactobacillus crispatus JV-V01]
 gi|256849118|ref|ZP_05554551.1| DNA repair protein RadA [Lactobacillus crispatus MV-1A-US]
 gi|293381073|ref|ZP_06627094.1| DNA repair protein RadA [Lactobacillus crispatus 214-1]
 gi|295692209|ref|YP_003600819.1| DNA repair protein rada [Lactobacillus crispatus ST1]
 gi|312977952|ref|ZP_07789698.1| DNA repair protein RadA [Lactobacillus crispatus CTV-05]
 gi|227861084|gb|EEJ68737.1| DNA repair protein RadA [Lactobacillus crispatus JV-V01]
 gi|256713894|gb|EEU28882.1| DNA repair protein RadA [Lactobacillus crispatus MV-1A-US]
 gi|290922373|gb|EFD99354.1| DNA repair protein RadA [Lactobacillus crispatus 214-1]
 gi|295030315|emb|CBL49794.1| DNA repair protein radA [Lactobacillus crispatus ST1]
 gi|310895259|gb|EFQ44327.1| DNA repair protein RadA [Lactobacillus crispatus CTV-05]
          Length = 458

 Score = 44.1 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 62/183 (33%), Gaps = 7/183 (3%)

Query: 3   YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
           + KE   V K      A   IQ+  G    ++L       E  E + + S  L+  LG G
Sbjct: 33  FEKETEEVQKRSTKATASRLIQKT-GLNEPVKL--DKIKAEKEERIVTKSEELNRVLG-G 88

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G   G +V I G    GK+TL L  ++   +          E A             ++ 
Sbjct: 89  GIVPGSLVLIGGDPGIGKSTLMLQIMSDLSEKYKVLYVSGEESANQIKLRADRLGVGQSN 148

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           ++  P+T    +      +     D +VIDS+  +   +        S        + + 
Sbjct: 149 MLLYPETDMHDIR---EQINDVKPDFVVIDSIQTMNEPSLDSMTGSASQVREVTSELMKI 205

Query: 183 LRK 185
            + 
Sbjct: 206 AKM 208


>gi|307180237|gb|EFN68270.1| Putative methyltransferase METT10D [Camponotus floridanus]
          Length = 763

 Score = 44.1 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 85/280 (30%), Gaps = 46/280 (16%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV-DAEHALDSIYA 112
            LD  L  GG   G++ E+ GP SSGKT L L   A          +  D +        
Sbjct: 1   SLDELL-KGGLYPGQLCELCGPSSSGKTQLCLTIAANVAVQSDIIVWYFDTKRDFSRFRY 59

Query: 113 RKLGV--------------DLKNLLISQPDTGEQALEITDMLVRSGAVDI---------I 149
            ++                  K   I  P    + L       ++    +         +
Sbjct: 60  EEILKAKNFRQEVIKDTLQRTKVCHIRSPRDLIRVLRELVTFYKTEQNSVSFGGRRFPLV 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           +IDS+ A+  +   E    +     +   +++A R LT         +  + +      +
Sbjct: 120 IIDSLPAVIFKVTREAHQCDLETTYELDDLAEACRFLTRECEAIVITVNSVTRWNSSDQI 179

Query: 210 MFGSPETTTGGNALKFYSSVRL-------DIRRVGSIKDKDS--------ITGNQTRVKV 254
              +     G          RL       + RR+   KD  S            +  VK 
Sbjct: 180 DPAAITPALGRY-WARVPVTRLLIIRQHGETRRITVWKDLRSDEKSFCIVTIDIRMNVKR 238

Query: 255 V---KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASI 291
               +NK   P    +  ++Y E       ++D+  K  I
Sbjct: 239 YIHPRNKYKKPPDYKQLAVLYPE--FREIAIMDIAGKIRI 276


>gi|258404991|ref|YP_003197733.1| DNA repair protein RadA [Desulfohalobium retbaense DSM 5692]
 gi|257797218|gb|ACV68155.1| DNA repair protein RadA [Desulfohalobium retbaense DSM 5692]
          Length = 448

 Score = 44.1 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 77/198 (38%), Gaps = 7/198 (3%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + SG+ GLD  LG G  P   ++ + G    GK+TL L  +      G T  +V  E 
Sbjct: 68  ERLPSGTPGLDTLLGGGLVPSSAVL-VGGEPGIGKSTLLLQLVGGLAAQGRTAVYVSGEE 126

Query: 106 ALD--SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           +L       ++LGV  +N+L       E+ LEI +         ++V+DSV  ++ R   
Sbjct: 127 SLAQLRQRGQRLGVLTENVLALSTTNAEELLEILE----DDPPALVVLDSVQTMSLRETE 182

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
                 S     A  + + +++L + +     +         K+            G+  
Sbjct: 183 AAPGTISQVRAVATAVIERIKQLPTIVIVVSHVTKEGQIAGPKLLEHMVDTVLYLEGDKQ 242

Query: 224 KFYSSVRLDIRRVGSIKD 241
             Y  +R+   R G   D
Sbjct: 243 HLYRLLRVVKNRYGPADD 260


>gi|195060405|ref|XP_001995799.1| GH17957 [Drosophila grimshawi]
 gi|193896585|gb|EDV95451.1| GH17957 [Drosophila grimshawi]
          Length = 246

 Score = 44.1 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 7/80 (8%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCA 99
           + + +    LD  L  GG   G++ EI G   +G T L +      Q         G   
Sbjct: 17  QRIKTDIGPLDKFL-RGGIRTGKVYEIVGKPGTGGTQLCMKLCLNVQILKDARGLAGKAL 75

Query: 100 FVDAEHALDSIYARKLGVDL 119
           ++D   A +    R L  DL
Sbjct: 76  YLDTRMAFNPDALRNLAEDL 95


>gi|317128935|ref|YP_004095217.1| circadian clock protein, KaiC [Bacillus cellulosilyticus DSM 2522]
 gi|315473883|gb|ADU30486.1| putative circadian clock protein, KaiC [Bacillus cellulosilyticus
           DSM 2522]
          Length = 476

 Score = 44.1 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 86/218 (39%), Gaps = 29/218 (13%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFVDAEHAL 107
           +SG  GLD  L  GGFP G  + + G   +GKT L +  +         +  ++  E   
Sbjct: 6   TSGIEGLDYILN-GGFPTGSSILLEGAPGTGKTILGMQFLYDGALNNNESGIYITFEEFP 64

Query: 108 DSIY--ARKLGVDLKNL--------LISQPDTGEQALE----ITDMLVRSGAVDIIVIDS 153
           D IY      G D+K+L        +   PD   + ++    I D +++      IVIDS
Sbjct: 65  DQIYNDMDSFGWDIKSLEKENKLRVICISPDVLLEQMKKSNGIFDQVIKEINCKRIVIDS 124

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           ++  +   E + +  +++  ++  L      +L+S +   +      N+   +I  +   
Sbjct: 125 LSLFSFGMENQKEARDNIYTIRNILRKH---RLSSILIHEQT-----NKSEEEIPFVSYV 176

Query: 214 PETTTGGNALKFYSSVR-----LDIRRVGSIKDKDSIT 246
            +     +    ++  R     +   R   IK+ + I 
Sbjct: 177 LDGVIRLSLQGHHTIYRKRTLEVLKMRGCCIKEGEHIY 214


>gi|164428179|ref|XP_957194.2| hypothetical protein NCU01771 [Neurospora crassa OR74A]
 gi|16416086|emb|CAB91223.2| related to RAD57 protein [Neurospora crassa]
 gi|157072044|gb|EAA27958.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 510

 Score = 44.1 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 64/216 (29%), Gaps = 49/216 (22%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-----KTGGTCAF 100
           + +S+    +D ALG GG P G + EI G   +GKT   L  +   Q       G    +
Sbjct: 105 QTISTLDPDIDRALG-GGIPAGYVTEITGESGAGKTQFLLTLLLSVQLPPPHGLGRPALY 163

Query: 101 VDAEHALDSIYARKL----------------------------GVDLKNLLISQPDTGEQ 132
           +  E  L +    ++                               L N++ +     E 
Sbjct: 164 ISTEAPLSTRRLAQMLTTNPFYADLDSESGRGGEGGGGGGGGKRPSLDNIISTVTPDLES 223

Query: 133 ALEITDMLVR---SGAVDIIVIDSVAALTPRAEIEGDMGE------------SLPGMQAR 177
              I    V          +++    A   RAE +    E            S  G +  
Sbjct: 224 QDHILTYQVPVEIERRNIGLLVLDSVAANYRAEFDRSSKEAATSSSTPGARSSNMGARTA 283

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
            + +   +L     +    +V  NQ+  + G     
Sbjct: 284 ELVRLGMQLRDLAQKYNLAVVVSNQVADRFGTKMPE 319


>gi|317969045|ref|ZP_07970435.1| circadian clock protein KaiC [Synechococcus sp. CB0205]
          Length = 513

 Score = 44.1 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 59/181 (32%), Gaps = 30/181 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG   LD   G GGF K  I+   G   +GKT L    +  + 
Sbjct: 248 MRLTQRSSNV----RVSSGVPRLDEMCG-GGFFKDSIILATGATGTGKTLLVSKFVENAC 302

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
                      E +   +        L            ++ + P++   E  L+I    
Sbjct: 303 ANKERAILFAYEESRAQLLRNATSWGLDFEEMERQGLLKIICAYPESTGLEDHLQIIKTE 362

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       + IDS++AL          G S          Q +  +T    + +    F 
Sbjct: 363 ISQFKPSRMAIDSLSALA--------RGVSH-----NAFRQFVIGVTGYAKQEEIAGFFT 409

Query: 201 N 201
           N
Sbjct: 410 N 410



 Score = 39.8 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 38 QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
          Q +    ++ + +G  G D     GG P GR   I G   +GKT  +L+ +    + 
Sbjct: 7  QSNHLASVQKLPTGIEGFDDVC-QGGLPIGRSTLISGTSGTGKTVFSLNFLYNGIRQ 62


>gi|304314733|ref|YP_003849880.1| ATPase [Methanothermobacter marburgensis str. Marburg]
 gi|302588192|gb|ADL58567.1| predicted ATPase [Methanothermobacter marburgensis str. Marburg]
          Length = 224

 Score = 44.1 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           ++G  GLD  LG      G ++ + GP  +GK+ LA   I +  + G  C F+ AE+ 
Sbjct: 6   TTGIAGLDDILGE--LEPGSVMLVTGPPKAGKSVLATEFIYRGLQAGNPCLFIAAEYG 61


>gi|209946340|gb|ACI97401.1| spindle B [Drosophila simulans]
          Length = 341

 Score = 44.1 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 78/238 (32%), Gaps = 25/238 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCA 99
             VS G   LD   G GG     I E+ G    GKT L L          +    G   A
Sbjct: 86  SRVSFGCSALDRCTG-GGVVTRGITELCGAAGVGKTQLLLQLCLCVQLPRELGGLGKGVA 144

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           ++  E +  +    ++    +             + + +  + +  +   VI+ +  L  
Sbjct: 145 YICTESSFPARRLLQMSKACEKRHPQMELNFLGNIFV-ENHIEAEPLLACVINRIPRLMQ 203

Query: 160 RAEIEGDMGESLPG---------MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +  I   + +S+            +AR M +    L S   +  C +V +NQ+  + G  
Sbjct: 204 QHGIGLIIIDSVAAIFRLYNDYLERARHMRRLADALLSYADKYNCAVVCVNQVATRDG-- 261

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
               E    G         RL + RV     K    G+Q         + SP    +F
Sbjct: 262 --QDEIPCLGLQWAHLGRTRLRVSRVP----KQHRMGDQLITVRKLEILYSPETPNDF 313


>gi|120598020|ref|YP_962594.1| DNA repair protein RadA [Shewanella sp. W3-18-1]
 gi|146293908|ref|YP_001184332.1| DNA repair protein RadA [Shewanella putrefaciens CN-32]
 gi|120558113|gb|ABM24040.1| DNA repair protein RadA [Shewanella sp. W3-18-1]
 gi|145565598|gb|ABP76533.1| DNA repair protein RadA [Shewanella putrefaciens CN-32]
 gi|319427284|gb|ADV55358.1| DNA repair protein RadA [Shewanella putrefaciens 200]
          Length = 454

 Score = 44.1 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 8/146 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
              +  + S    LD  LG GG   G  + I G   +GK+TL L T+    +      +V
Sbjct: 68  LNALPRILSHFGELDRVLG-GGIVPGSAILIGGHPGAGKSTLLLQTLCYLAEQ-MPALYV 125

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+    L +    + EQ  E+    +      +IV+DS+  +  
Sbjct: 126 TGEESLQQVAMRAHRLGLPTNKLRMLSETSVEQICEVALKELPK----VIVVDSIQVMHM 181

Query: 160 RAEIEGDMGESLPGMQARLMSQALRK 185
                     S     A  +++  ++
Sbjct: 182 SDVASSPGSVSQVRESASYLTRFAKQ 207


>gi|295657668|ref|XP_002789400.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226283822|gb|EEH39388.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 594

 Score = 44.1 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 61/175 (34%), Gaps = 9/175 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-----KTGG 96
           F  +  +S+    LD AL  GG   G + E  G   SGKT   LH +   Q      T  
Sbjct: 128 FPELSFISTLDPVLDAALA-GGISTGYVTEFAGESGSGKTQFLLHLLLSVQLPPPYGTSR 186

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE-ITDMLVRSGAVDIIVIDSVA 155
              +   E  L +    +L  D   L      +   +LE I  +          +++   
Sbjct: 187 KALYFSTESDLPTGRLSQLLEDHPLLSTLPEASARPSLENILSITTIDLETQDHILNIKF 246

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
            L  R         S    +A  + +  R L +  ++    +V  NQ+  +I + 
Sbjct: 247 QL--RCHESDSDNVSGLLARAWQLKKLGRFLRNLAAKENIAIVVANQVSDQIQMD 299


>gi|195570925|ref|XP_002103454.1| GD18959 [Drosophila simulans]
 gi|194199381|gb|EDX12957.1| GD18959 [Drosophila simulans]
 gi|209946350|gb|ACI97406.1| spindle B [Drosophila simulans]
 gi|209946352|gb|ACI97407.1| spindle B [Drosophila simulans]
          Length = 341

 Score = 44.1 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 78/238 (32%), Gaps = 25/238 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCA 99
             VS G   LD   G GG     I E+ G    GKT L L          +    G   A
Sbjct: 86  SRVSFGCSALDRCTG-GGVVTRGITELCGAAGVGKTQLLLQLCLCVQLPRELGGLGKGVA 144

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           ++  E +  +    ++    +             + + +  + +  +   VI+ +  L  
Sbjct: 145 YICTESSFPARRLLQMSKACEKRHPQMELNFLGNIFV-ENHIEAEPLLACVINRIPRLMQ 203

Query: 160 RAEIEGDMGESLPG---------MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +  I   + +S+            +AR M +    L S   +  C +V +NQ+  + G  
Sbjct: 204 QHGIGLIIIDSVAAIFRLYNDYLERARHMRRLADALLSYADKYNCAVVCVNQVATRDG-- 261

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
               E    G         RL + RV     K    G+Q         + SP    +F
Sbjct: 262 --QDEIPCLGLQWAHLGRTRLRVSRVP----KQHRMGDQLITVRKLEILYSPETPNDF 313


>gi|171190294|gb|ACB42453.1| disrupted meiotic cDNA protein [Hordelymus europaeus]
          Length = 136

 Score = 44.1 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 52/148 (35%), Gaps = 18/148 (12%)

Query: 122 LLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
           ++ ++  T E    +       +      ++++DSV AL          G S    + + 
Sbjct: 1   IIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRSELAERQQK 56

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRV 236
           ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +R+ 
Sbjct: 57  LAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLRKG 116

Query: 237 GSIKDKDSITGNQTRVKVVKNKMASPFK 264
                     G Q   K+         +
Sbjct: 117 K---------GEQRVCKIFDAPNLPEGE 135


>gi|291547760|emb|CBL20868.1| hypothetical protein CK1_30100 [Ruminococcus sp. SR1/5]
          Length = 624

 Score = 44.1 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 93/278 (33%), Gaps = 20/278 (7%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKLGVDLKN 121
            P G++  I G    GKT  A+   A            D E    +       +G  +K 
Sbjct: 326 IPFGKLTIIQGNPGEGKTYFAMMLTAACTNRKLFPNMEDIEPFNVIYQTAEDGMGDTIKP 385

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD----MGESLPGMQAR 177
            L+       + + I D        D  +  +V     R  I       +G  +   +A 
Sbjct: 386 RLVEAGADLSRVMVIDDSEEVLTLSDDRIEKAVRQNHVRLVIIDPVQAFIGADVDMNRAN 445

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
            +    RKL     ++ C +V I  +    G          G  ++   ++VR  I    
Sbjct: 446 EVRPVFRKLGMIAEKTSCAIVLIGHLNKSSGTQSTYR----GLGSIDIMAAVRSLIFIGK 501

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
             KD  +       +   K+ +A P + + F +   EG  + G   ++     +  K G 
Sbjct: 502 VRKDPTTRV-----LIHEKSSLAPPGETMAFKLGDEEGFRWVGA-YEISADELLDGKEG- 554

Query: 298 WFSFKGQRLGQGRENSKIFLRENIEIA-ENIESLLRQN 334
                  +L +G +  +  L +  EI+   ++   ++ 
Sbjct: 555 --KATETKLERGAKLIQELLVDKNEISIRELDDKAKEQ 590


>gi|71018023|ref|XP_759242.1| hypothetical protein UM03095.1 [Ustilago maydis 521]
 gi|404087|gb|AAA64741.1| REC2 protein [Ustilago maydis]
 gi|46098653|gb|EAK83886.1| hypothetical protein UM03095.1 [Ustilago maydis 521]
          Length = 781

 Score = 44.1 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           V SSGS  LD  LG GG     + E+ G   SGKT +A+    
Sbjct: 225 VFSSGSRELDDLLG-GGVRSAVLTELVGESGSGKTQMAIQVCT 266


>gi|239608262|gb|EEQ85249.1| DNA repair protein [Ajellomyces dermatitidis ER-3]
          Length = 652

 Score = 44.1 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 65/193 (33%), Gaps = 25/193 (12%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG- 96
           QG     +  +S+    LD AL  GG   G + E+ G    GKT   LH +   Q     
Sbjct: 160 QGQRLPTLSFISTLDPVLDQALA-GGISTGYVTELAGESGCGKTQFLLHLLLSVQLPPPY 218

Query: 97  ----TCAFVDAEHALDSIYARKL---GVDLKNLLISQPD---------------TGEQAL 134
                  +   E  L +    +L      +  L    P                + +  L
Sbjct: 219 GTSQKALYFSTESDLPTGRLSQLLEEHPIISTLPEESPRPSLENILAITTIDLESQDHIL 278

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
                +  S     +V+    A   RAE + D  + L  ++A  + +  + L +  +   
Sbjct: 279 NYQIPVAVSRYNVGLVVIDSIAANYRAESDSDNVDGLL-VRAWQLKKLGQFLRNLAANQN 337

Query: 195 CILVFINQMRMKI 207
             +V  NQ+  +I
Sbjct: 338 IAIVVANQVSDRI 350


>gi|195329020|ref|XP_002031209.1| GM24163 [Drosophila sechellia]
 gi|194120152|gb|EDW42195.1| GM24163 [Drosophila sechellia]
          Length = 341

 Score = 44.1 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 79/238 (33%), Gaps = 25/238 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCA 99
             VS G   LD   G GG     I E+ G    GKT L L          +    G   A
Sbjct: 86  SRVSFGCSALDRCTG-GGVVTRGITELCGAAGVGKTQLLLQLCLCVQLPRELGGLGKGVA 144

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           ++  E +  +    ++    +            ++ + +  + +  +   VI+ +  L  
Sbjct: 145 YICTESSFPARRLLQMSKACEKRHPQMELNFLGSIFV-ENHIEAEPLLACVINRIPRLMQ 203

Query: 160 RAEIEGDMGESLPG---------MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +  I   + +S+            +AR M +    L S   +  C +V +NQ+  + G  
Sbjct: 204 QHGIGLIIIDSVAAIFRLYNDYLERARHMRRLADALLSYADKYNCAVVCVNQVATRDG-- 261

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
               E    G         RL + RV     K    G+Q         + SP    +F
Sbjct: 262 --QDEIPCLGLQWAHLGRTRLRVSRVP----KQHRMGDQLITVRKLEILYSPETPNDF 313


>gi|31087797|gb|AAN27933.1| disrupted meiotic cDNA 1 [Hordeum comosum]
          Length = 139

 Score = 44.1 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 18/152 (11%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N++ ++  T E    +       +      ++++DSV AL          G      + 
Sbjct: 1   DNIIYARAYTYEHQYNLLLGLAAKMAEVPFRLLIVDSVIALFR----VDFSGRGELAERQ 56

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR 234
           + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +R
Sbjct: 57  QKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           +           G Q   K+         + V
Sbjct: 117 KGK---------GEQRVCKIFDAPNLPEGEAV 139


>gi|327310667|ref|YP_004337564.1| putative circadian clock protein KaiC [Thermoproteus uzoniensis
           768-20]
 gi|326947146|gb|AEA12252.1| putative circadian clock protein, KaiC [Thermoproteus uzoniensis
           768-20]
          Length = 279

 Score = 44.1 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 79/246 (32%), Gaps = 33/246 (13%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ----SQKTGGTCAFV 101
           +   +G   +D  LG GGF +G I  I G    GKT  +L  +        + G      
Sbjct: 12  DRSPTGVWYVDQLLG-GGFKRGEIYLIAGEAGQGKTIFSLQFLKTGAELYDEPGLYITVD 70

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           +    +       LG DL  L   Q               +S     +V D      PR 
Sbjct: 71  EPSEDVKRGVKSSLGWDLDVLEEQQKLVFVDLRTHFKAYSQSEK---VVAD------PR- 120

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM---------KIGVMFG 212
           EI   + +++     + +   +  +   +  S   ++++ +            K      
Sbjct: 121 EIAKVIIDNVRKFGIKRL--VVDPIAPLLITSHTDVLWVREYMRELVFQLRKLKDVTTVM 178

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIK-DKDSITGNQTRVKVVKNKMASPFKQ----VE 267
           + E  TG N +  +     +    G IK +     G   RV  ++    +P +      E
Sbjct: 179 TSEIPTGENKISRFGVE--EYLASGVIKLELQEYRGFVFRVMFIRKMRWTPVRPQKLVFE 236

Query: 268 FDIMYG 273
               YG
Sbjct: 237 IYPQYG 242


>gi|315639131|ref|ZP_07894297.1| DNA repair protein RadA [Campylobacter upsaliensis JV21]
 gi|315480768|gb|EFU71406.1| DNA repair protein RadA [Campylobacter upsaliensis JV21]
          Length = 446

 Score = 44.1 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 67/195 (34%), Gaps = 24/195 (12%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E    +S+  + LD+ LG GG  +G ++ I G    GK+TL L   +   + G    +V
Sbjct: 65  LEHFTRISTEDVELDLVLG-GGIVEGSLILIGGSPGVGKSTLLLKIASNLAQKGKKVLYV 123

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTG---EQALEITDMLVRSGAVDIIVIDSVAALT 158
             E +       ++ +    L  + P+     E   E     +     + ++IDS+  L 
Sbjct: 124 SGEES-----KTQIKLRADRLEANSPNLFLLTELCFENIAEELYKQDYEFLIIDSIQTLY 178

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
                      +        + +        +S+ K I  FI     K G +        
Sbjct: 179 SSKIASAAGSITQVRELTFELMK--------VSKMKNISTFIIGHITKEGAI-------A 223

Query: 219 GGNALKFYSSVRLDI 233
           G   L+    V L  
Sbjct: 224 GPRVLEHMVDVVLYF 238


>gi|261203417|ref|XP_002628922.1| DNA repair protein [Ajellomyces dermatitidis SLH14081]
 gi|239586707|gb|EEQ69350.1| DNA repair protein [Ajellomyces dermatitidis SLH14081]
          Length = 591

 Score = 44.1 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 65/193 (33%), Gaps = 25/193 (12%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG- 96
           QG     +  +S+    LD AL  GG   G + E+ G    GKT   LH +   Q     
Sbjct: 100 QGQRLPTLSFISTLDPVLDQALA-GGISTGYVTELAGESGCGKTQFLLHLLLSVQLPPPY 158

Query: 97  ----TCAFVDAEHALDSIYARKL---GVDLKNLLISQPD---------------TGEQAL 134
                  +   E  L +    +L      +  L    P                + +  L
Sbjct: 159 GTSQKALYFSTESDLPTGRLSQLLEEHPIISTLPEESPRPSLENILAITTIDLESQDHIL 218

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
                +  S     +V+    A   RAE + D  + L  ++A  + +  + L +  +   
Sbjct: 219 NYQIPVAVSRYNVGLVVIDSIAANYRAESDSDNVDGLL-VRAWQLKKLGQFLRNLAANQN 277

Query: 195 CILVFINQMRMKI 207
             +V  NQ+  +I
Sbjct: 278 IAIVVANQVSDRI 290


>gi|209946342|gb|ACI97402.1| spindle B [Drosophila simulans]
          Length = 341

 Score = 44.1 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 77/238 (32%), Gaps = 25/238 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCA 99
             VS G   LD   G GG     I E+ G    GKT L L          +    G   A
Sbjct: 86  SRVSFGCSALDRCTG-GGVVTRGITELCGAAGVGKTQLLLQLCLCVQLPRELGGLGKGVA 144

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           ++  E +  +    ++    +             + + +  + +  +   VI+ +  L  
Sbjct: 145 YICTESSFPARRLLQMSKACEKRHPQMELNFLGNIFV-ENHIEAEPLLACVINRIPRLMQ 203

Query: 160 RAEIEGDMGESLPG---------MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +  I   + +S+            +AR M +    L S   +  C +V +NQ+  + G  
Sbjct: 204 QHGIGLIIIDSVAAIFRLYNDYLERARHMRRLADALLSYADKYNCAVVCVNQVATRDG-- 261

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
               E    G         RL + RV     K    G Q         + SP    +F
Sbjct: 262 --QDEIPCLGLQWAHLGRTRLRVSRVP----KQHRMGEQLITVRKLEILYSPETPNDF 313


>gi|31087793|gb|AAN27931.1| disrupted meiotic cDNA 1 [Hordeum muticum]
 gi|31087795|gb|AAN27932.1| disrupted meiotic cDNA 1 [Hordeum flexuosum]
 gi|31087803|gb|AAN27936.1| disrupted meiotic cDNA 1 [Hordeum patagonicum subsp. patagonicum]
 gi|31087805|gb|AAN27937.1| disrupted meiotic cDNA 1 [Hordeum patagonicum subsp. setifolium]
 gi|31087807|gb|AAN27938.1| disrupted meiotic cDNA 1 [Hordeum patagonicum subsp. mustersii]
 gi|31087813|gb|AAN27941.1| disrupted meiotic cDNA 1 [Hordeum chilense]
 gi|31087815|gb|AAN27942.1| disrupted meiotic cDNA 1 [Hordeum intercedens]
 gi|51317922|gb|AAU00061.1| disrupted meiotic cDNA 1 [Hordeum secalinum]
 gi|51317924|gb|AAU00062.1| disrupted meiotic cDNA 1 [Hordeum secalinum]
 gi|51317926|gb|AAU00063.1| disrupted meiotic cDNA 1 [Hordeum capense]
 gi|51317928|gb|AAU00064.1| disrupted meiotic cDNA 1 [Hordeum capense]
          Length = 139

 Score = 44.1 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 18/152 (11%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N++ ++  T E    +       +      ++++DSV AL          G      + 
Sbjct: 1   DNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAERQ 56

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR 234
           + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +R
Sbjct: 57  QKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           +           G Q   K+         + V
Sbjct: 117 KGK---------GEQRVCKIFDAPNLPEGEAV 139


>gi|327349451|gb|EGE78308.1| DNA repair protein [Ajellomyces dermatitidis ATCC 18188]
          Length = 590

 Score = 44.1 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 65/193 (33%), Gaps = 25/193 (12%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG- 96
           QG     +  +S+    LD AL  GG   G + E+ G    GKT   LH +   Q     
Sbjct: 100 QGQRLPTLSFISTLDPVLDQALA-GGISTGYVTELAGESGCGKTQFLLHLLLSVQLPPPY 158

Query: 97  ----TCAFVDAEHALDSIYARKL---GVDLKNLLISQPD---------------TGEQAL 134
                  +   E  L +    +L      +  L    P                + +  L
Sbjct: 159 GTSQKALYFSTESDLPTGRLSQLLEEHPIISTLPEESPRPSLENILAITTIDLESQDHIL 218

Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
                +  S     +V+    A   RAE + D  + L  ++A  + +  + L +  +   
Sbjct: 219 NYQIPVAVSRYNVGLVVIDSIAANYRAESDSDNVDGLL-VRAWQLKKLGQFLRNLAANQN 277

Query: 195 CILVFINQMRMKI 207
             +V  NQ+  +I
Sbjct: 278 IAIVVANQVSDRI 290


>gi|284155168|gb|ADB78685.1| disrupted meiotic cDNA 1 protein [Elymus trachycaulus]
          Length = 137

 Score = 44.1 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 56/148 (37%), Gaps = 15/148 (10%)

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDII-VIDSVAALTPRAEIEGDMGESLPGMQARL 178
            N++ ++P T E    +   L    A +   ++DSV AL  R +  G     L   Q + 
Sbjct: 1   DNIIYARPYTYEHQYNLLLGLAAKMAEEPFRLLDSVIALF-RVDFSGRGE--LAERQVQK 57

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRV 236
           ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +R+ 
Sbjct: 58  LAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLRKG 117

Query: 237 GSIKDKDSITGNQTRVKVVKNKMASPFK 264
                     G Q   K+         +
Sbjct: 118 K---------GEQRVCKIFDAPNLPEGE 136


>gi|258627913|gb|ACV85583.1| truncated RecA-like protein [Anaplasma phagocytophilum]
          Length = 34

 Score = 44.1 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 22/28 (78%)

Query: 8  NIVDKSKALEAALSQIQRVYGKGAIMQL 35
          +  DK +A++AA+ QI+  +G+G+IM+L
Sbjct: 7  SPSDKQRAVDAAIGQIEHAFGRGSIMRL 34


>gi|152991501|ref|YP_001357223.1| ATPase [Nitratiruptor sp. SB155-2]
 gi|151423362|dbj|BAF70866.1| ATPase, RecA-superfamily [Nitratiruptor sp. SB155-2]
          Length = 293

 Score = 44.1 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 83/265 (31%), Gaps = 41/265 (15%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIA-------------LGIGGFPKGRIVEIYGP 75
           K +I +          I  V +G  GLD               + +GG PK  +  + G 
Sbjct: 18  KESIFKGSEALQKAPEIVGVPTGIEGLDDLFFTLKEEKGKLKQVPLGGIPKYSVFNLTGV 77

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAE----------HALDSIYARKLGVDLKNLLIS 125
             +GK+ +A     +  + G   AF+  E                   K      N+++ 
Sbjct: 78  NDTGKSLMAEQFAVEQARKGEKVAFITVETPANFVISSIKYRALAMGYKFEDFEDNIILI 137

Query: 126 QPDTG-------EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
              +           L      ++   ++  VIDSV  L    E    M  ++       
Sbjct: 138 DAASHSKLRENIPDLLATLAYAIKEFKINYTVIDSVTGLFENKE---MMARAIVRRVYNF 194

Query: 179 MSQALRKLTSSISRSKCILVFINQ-------MRMKIGVMFGSPETTTGGNALKFYSSVRL 231
           + +  +       +        ++         +  G M  + E      A + Y +   
Sbjct: 195 LKKWYQTAILISQKRSGHEELSSEAAGGYAVGHIVDGTMVVAKELIVSQYAARMYKAKLG 254

Query: 232 DIRRVGSIKDKDSITGNQTRVKVVK 256
           D+ R+  I D   ++G+ T+   ++
Sbjct: 255 DLIRLFRI-DGCRMSGHDTKTHFME 278


>gi|318042213|ref|ZP_07974169.1| circadian clock protein KaiC [Synechococcus sp. CB0101]
          Length = 514

 Score = 44.1 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 59/181 (32%), Gaps = 30/181 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG   LD   G GGF K  I+   G   +GKT L    +  + 
Sbjct: 248 MRLTQRSSNV----RVSSGVPRLDEMCG-GGFFKDSIILATGATGTGKTLLVSKFVENAC 302

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
                      E +   +        +            ++ + P++   E  L+I    
Sbjct: 303 ANKERAILFAYEESRAQLLRNATSWGIDFEQMERDGLLKIICAYPESTGLEDHLQIIKTE 362

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       + IDS++AL          G S          Q +  +T    + +    F 
Sbjct: 363 IGQFKPSRMAIDSLSALA--------RGVSH-----NAFRQFVIGVTGYAKQEEIAGFFT 409

Query: 201 N 201
           N
Sbjct: 410 N 410



 Score = 39.1 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 41 IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
              ++ + +G  G D     GG P GR   I G   +GKT  +L+ +    + 
Sbjct: 10 ALSSVQKLPTGIEGFDDIC-QGGLPIGRSTLISGTSGTGKTVFSLNFLYNGIRQ 62


>gi|148241350|ref|YP_001226507.1| DNA repair protein RadA [Synechococcus sp. RCC307]
 gi|147849660|emb|CAK27154.1| DNA repair protein RadA [Synechococcus sp. RCC307]
          Length = 463

 Score = 44.1 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 59/152 (38%), Gaps = 11/152 (7%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            ++ + +G   LD  LG GG   G +V + G    GK+TL L T A   +   +  +V A
Sbjct: 71  AVQRLGTGFAELDRVLG-GGLVPGSLVLVGGDPGIGKSTLLLQTAADLAQR-QSVLYVSA 128

Query: 104 EHALDSIYAR-----KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           E +   +  R       G D     +      E  L+  + L      D+ VIDS+ AL 
Sbjct: 129 EESAQQVKLRWQRLAAAGSDGDGPQLLAETDLEHVLQELEAL----RPDVAVIDSIQALH 184

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
                      +     A  + +  +KL  ++
Sbjct: 185 DADLSSAPGSVAQVRECAASLQRLAKKLDIAL 216


>gi|330805267|ref|XP_003290606.1| hypothetical protein DICPUDRAFT_18874 [Dictyostelium purpureum]
 gi|325079245|gb|EGC32854.1| hypothetical protein DICPUDRAFT_18874 [Dictyostelium purpureum]
          Length = 275

 Score = 44.1 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 67/221 (30%), Gaps = 39/221 (17%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ---SQKTGGT---CA 99
           + + +    +D  L  GG P  ++ E  G    GKT +A          +  GG      
Sbjct: 31  QHIITFCKEIDQILN-GGVPLKKLTEFCGVPGIGKTQMAFQLAINTSIPKSLGGIEGKSI 89

Query: 100 FVDAEHALDSIYARKLGVD----------------------LKNLLISQPDTGEQALEIT 137
           ++D E        R++                         L N+   +     + + + 
Sbjct: 90  YIDTEGNYSCQRVREMAQHLYDHLEKINGPSEPLSITVDSILNNIYFYRVYNYMEMISLV 149

Query: 138 DM---LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
                 +       ++I        R +           ++ RL+    + L S  +R  
Sbjct: 150 HQIPLFLEQNKDVRLIILDSITFPFRKDFTD------MALRTRLLLSLAQNLMSIATRFN 203

Query: 195 CILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIR 234
             +VF+NQ+  KI      S      G +     + R+ + 
Sbjct: 204 VAVVFMNQVTTKISPNKRESILVPYLGESWAHICTYRMILF 244


>gi|300859182|ref|YP_003784165.1| DNA repair protein [Corynebacterium pseudotuberculosis FRC41]
 gi|300686636|gb|ADK29558.1| DNA repair protein [Corynebacterium pseudotuberculosis FRC41]
 gi|302206872|gb|ADL11214.1| DNA repair protein radA-like protein [Corynebacterium
           pseudotuberculosis C231]
 gi|302331438|gb|ADL21632.1| DNA repair protein RadA [Corynebacterium pseudotuberculosis 1002]
 gi|308277126|gb|ADO27025.1| DNA repair protein RadA [Corynebacterium pseudotuberculosis I19]
          Length = 467

 Score = 44.1 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 8/114 (7%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQKTGG----TCAFVDA 103
           S+G   LD  LG G  P G +V + G    GK+TL L   ++ +Q+  G       +V A
Sbjct: 84  STGISELDRVLGTGIVP-GSVVLLAGEPGVGKSTLLLEVASKWAQQPDGDSTRIALYVTA 142

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           E +   +  R          +         L+I    V      ++++DSV  +
Sbjct: 143 EESAGQVRMRAERTGALQKTLYLAAESH--LDIVFGHVEQLKPSLLIVDSVQTM 194


>gi|75907239|ref|YP_321535.1| circadian clock protein KaiC [Anabaena variabilis ATCC 29413]
 gi|75700964|gb|ABA20640.1| circadian clock protein KaiC [Anabaena variabilis ATCC 29413]
          Length = 519

 Score = 44.1 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 69/219 (31%), Gaps = 33/219 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG   LD   G GGF K  I+   G   +GKT L    +    
Sbjct: 251 MRLTQRSSNV----RVSSGVKTLDGMCG-GGFFKDSIILATGATGTGKTLLVSKFLQNGC 305

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
                      E +   +        +            ++ + P++   E  L+I    
Sbjct: 306 VNNERAILFAYEESRAQLSRNAYSWGIDFEELESQGLLKIICTYPESTGLEDHLQIIKSE 365

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 366 IAYFKPARIAIDSLSALA-------------RGVSNNAFRQFVIGVTGYAKQEEITGFFT 412

Query: 201 N---QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           N   Q      +      T T    +  Y  +R ++ R 
Sbjct: 413 NTTDQFMGSHSITDSHISTITDTILMLQYVEIRGEMSRA 451



 Score = 40.2 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 37 SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           Q +   G+E + +   G D  +  GG P GR   + G   +GKT L+L  +
Sbjct: 9  QQNTSGNGVEKIRTMIEGFDD-ISHGGLPVGRTTLVSGTSGTGKTLLSLQFL 59


>gi|317132363|ref|YP_004091677.1| DNA repair protein RadA [Ethanoligenens harbinense YUAN-3]
 gi|315470342|gb|ADU26946.1| DNA repair protein RadA [Ethanoligenens harbinense YUAN-3]
          Length = 461

 Score = 44.1 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 13/136 (9%)

Query: 31  AIMQLGSQGSIFEGIEV-----VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
           ++ + G   +    +E      + +     +  +G GG  +  +  +  P   GK++LAL
Sbjct: 49  SLSRPGVSAARLSEVETGNSDRLVTRIQEFNRVMG-GGLIRDSLTILSSPPGCGKSSLAL 107

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARK---LGVDLKNLLISQPDTGEQALEITDMLVR 142
                  + G    +   E +   I  R    L     NL I    +    L      + 
Sbjct: 108 MIAEDLAEQGCKALYASGEESASQIKRRADRILNGVNDNLWILSDTSMNNVLR----HID 163

Query: 143 SGAVDIIVIDSVAALT 158
           +   D +V DS+    
Sbjct: 164 AIDADFVVTDSIQTFV 179


>gi|212224930|ref|YP_002308166.1| ATPase [Thermococcus onnurineus NA1]
 gi|212009887|gb|ACJ17269.1| ATPase [Thermococcus onnurineus NA1]
          Length = 249

 Score = 44.1 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 6/82 (7%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ----SQKTGGTCAF 100
           I+ V SG  G D  +  GGFP G  V + GP  SGKTT  +  + +      + G     
Sbjct: 7   IKRVKSGIPGFDDLI-EGGFPVGTTVLVTGPTGSGKTTFGVQFVYKGAELYNEPGVIVTL 65

Query: 101 VDAEHALDSIYARKLGVDLKNL 122
            +    L     R  G DL+  
Sbjct: 66  EERAQDLRRE-MRAFGWDLERY 86


>gi|146301746|ref|YP_001196337.1| circadian clock protein KaiC [Flavobacterium johnsoniae UW101]
 gi|146156164|gb|ABQ07018.1| KaiC-like protein [Flavobacterium johnsoniae UW101]
          Length = 559

 Score = 44.1 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 75/227 (33%), Gaps = 15/227 (6%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           +++S+G  GL+     GGF +G  + I G   + KTT+A +   +  +      +   E 
Sbjct: 253 DIISTGVPGLNEMFNSGGFYRGSNILISGTAGTAKTTVACYFANEQCEKNEKTIYFAFEE 312

Query: 106 ALDS--IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           +        + +G+DL   +         +      L       + +   +    P   I
Sbjct: 313 SPHQLVRNMKSIGIDLDKHIKKGILQIHSSR---PSLNGLELHLLTLRKMIKEFAPTTII 369

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
              +   +       +   L +L   +  +    +F +  +          E +   + +
Sbjct: 370 IDPISNLISVGSEHEVRSMLVRLIDMLKANNITAMFTSLNKQTDNFRPDLAEESV-SSLV 428

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
             + +VR D+  VG          N+    +    M    +  EF I
Sbjct: 429 DTWITVR-DMEGVGER--------NRGIFIIKARGMGHSNQVREFVI 466



 Score = 39.4 bits (90), Expect = 0.87,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 5/118 (4%)

Query: 35  LGSQGSIFEGI-EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ--- 90
           +  +      I     +G  GLD  +  GGFPKGR   I G    GKT +++  + +   
Sbjct: 1   MQEKTKSHHFIFPKTPTGVDGLDE-ITEGGFPKGRPTLICGGAGCGKTLMSMQFLIKGIT 59

Query: 91  SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
                G     +      ++  + LG DL+ L   +    +        +  +G  D+
Sbjct: 60  DHNENGVFMSFEEPSDDLTLNVKSLGFDLEQLKKDKKLVVDHVRVERSEIEEAGEYDL 117


>gi|319777866|ref|YP_004134296.1| non-specific serine/threonine protein kinase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317171585|gb|ADV15122.1| Non-specific serine/threonine protein kinase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 479

 Score = 44.1 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 63/328 (19%), Positives = 105/328 (32%), Gaps = 36/328 (10%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +   VVSSG  GLD  L  GG P      + G   +GKTT AL  +      G  C +V
Sbjct: 4   RKKQPVVSSGIAGLDEIL-RGGLPASNFYIVQGDPGAGKTTAALQFLRAGVAAGERCIYV 62

Query: 102 DAEHALDSIY-------ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID-S 153
                   +            G+ ++ L  S+  +G     I              I+ +
Sbjct: 63  SLSQTAAELQAIASSHGWTLDGIRVEELSASETLSGAADQTIFQTADLRLDETRKAIERA 122

Query: 154 VAALTPRAEIEGDMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           +    P   +   + E  L         + L    + +++   + V ++           
Sbjct: 123 IEEHKPHRLVYDSLLEIRLITGDTPRFRRELIGFKAFLAKRGIVAVLLDTQTSGGDHNGE 182

Query: 213 SPETTTGGNA-----LKFYSSVR----LDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
             E    G       L+ Y  VR    +   R     D       +    VV      P 
Sbjct: 183 EIEGIAHGVIRLDKSLEDYGGVRRRVEVSKMRGVPFADGYHDMAIREGEGVVVFPRIVPG 242

Query: 264 KQVEFDIM--YGEGISFFGELIDLGVKAS----IVDKSGAWFS-----FKGQRLGQGREN 312
              E         G++   E+   G ++     ++ +SG   S     +    L Q  E+
Sbjct: 243 SPAEVTKPQLIKSGVAALDEMFGGGQESGTITLVIGQSGTGKSTMSSLYATAAL-QRSES 301

Query: 313 SKIFLRENIEIAENIESLLRQNAGLVAD 340
             +FL E     E +E+  R++ GL  D
Sbjct: 302 VALFLFE-----ERLETFFRRSEGLGMD 324



 Score = 39.4 bits (90), Expect = 0.82,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 14/133 (10%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
           GS   + +  +++ SG   LD   G GG   G I  + G   +GK+T++      + +  
Sbjct: 242 GSPAEVTKP-QLIKSGVAALDEMFG-GGQESGTITLVIGQSGTGKSTMSSLYATAALQRS 299

Query: 96  GTCAFVDAEHALDSIYA--RKLGVDLKNLL----------ISQPDTGEQALEITDMLVRS 143
            + A    E  L++ +     LG+DL+                  +  +  +I   +V  
Sbjct: 300 ESVALFLFEERLETFFRRSEGLGMDLRQFYKDGQLVIYDFSPNEISPGEFGQIVQQVVSR 359

Query: 144 GAVDIIVIDSVAA 156
               ++VIDS   
Sbjct: 360 NNTRVVVIDSFTG 372


>gi|194900751|ref|XP_001979919.1| GG16853 [Drosophila erecta]
 gi|190651622|gb|EDV48877.1| GG16853 [Drosophila erecta]
          Length = 341

 Score = 44.1 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 79/238 (33%), Gaps = 25/238 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCA 99
             VS G   LD   G G   +G I E+ G    GKT L L          +    G   A
Sbjct: 86  SRVSFGCSALDRCTGGGVVARG-ITELCGAAGVGKTQLLLQLCLCVQLPRELGGLGKGVA 144

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           ++  E A  +    ++    +             + + +  + +  +   V++ +  L  
Sbjct: 145 YICTESAFPARRLLQMSKACEKRHPQMELNFLGNIFV-ENHIEAETLLACVLNRIPRLMQ 203

Query: 160 RAEIEGDMGESLPG---------MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +  I   + +S+            +AR M +    L S   +  C +V +NQ+  + G  
Sbjct: 204 QHGIGLIIIDSVAAIFRLYTDYLERARHMRRLADALLSYADKYNCAVVCVNQVASRDG-- 261

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
               E    G         RL + RV     K    G+Q         + SP    +F
Sbjct: 262 --QDEIPCLGLQWAHLGRTRLRVSRVP----KQHRMGDQLITVRKLEILYSPETPNDF 313


>gi|41614970|ref|NP_963468.1| hypothetical protein NEQ174 [Nanoarchaeum equitans Kin4-M]
 gi|40068694|gb|AAR39029.1| NEQ174 [Nanoarchaeum equitans Kin4-M]
          Length = 256

 Score = 44.1 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 3/83 (3%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I+ V +G  G+D  L  GG PK  +V + G   +GK+ ++   I    + G    +V  
Sbjct: 2   AIQRVKTGIPGMDELLN-GGIPKRNVVLLAGGPGTGKSIMSQQYIYYGLQNGEPGIYVTL 60

Query: 104 E--HALDSIYARKLGVDLKNLLI 124
           E          +  G D      
Sbjct: 61  EEHPVAVRENMKNFGWDPTPYEE 83


>gi|254478742|ref|ZP_05092111.1| DNA repair protein RadA [Carboxydibrachium pacificum DSM 12653]
 gi|214035307|gb|EEB76012.1| DNA repair protein RadA [Carboxydibrachium pacificum DSM 12653]
          Length = 448

 Score = 44.1 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 4/115 (3%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + +G    D  LG GG  +G +V I G    GK+TL L       +   T  +V  E 
Sbjct: 66  ERIKTGIEEFDRVLG-GGIVRGSLVLIGGDPGIGKSTLLLQVAGNVSEK-FTVLYVSGEE 123

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           +      +     +           E  +++ +  +     D +++DS+  +   
Sbjct: 124 S--PQQIKLRADRILKERQDLYLLCETNIDVIEEKIEEIRPDFVIVDSIQTMYTE 176


>gi|303238349|ref|ZP_07324884.1| DNA repair protein RadA [Acetivibrio cellulolyticus CD2]
 gi|302594053|gb|EFL63766.1| DNA repair protein RadA [Acetivibrio cellulolyticus CD2]
          Length = 454

 Score = 44.1 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 78/212 (36%), Gaps = 29/212 (13%)

Query: 29  KGAIMQLGSQGSIFEGIEVVS-----SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           K +I+    +      I++ S     +G   +D  LG GG  KG +V + G    GK+TL
Sbjct: 46  KDSIL-FDVKPVNINDIQIESEERYLTGIKEMDRVLG-GGIVKGSLVLVGGDPGIGKSTL 103

Query: 84  ALHTIAQSQKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLV 141
            L  I  + K      +V  E ++  I  R  +LGV   NLL+      +    ++    
Sbjct: 104 ILQ-ICDTVKIDSKIIYVSGEESIKQIKIRADRLGVRNSNLLMVSETNFKAIEALS---- 158

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
            +    +I++DS+  +            S        + +        I+++K I +FI 
Sbjct: 159 ENENPALIIVDSIQTMFKDELSSAPGSVSQVREITSGLMR--------IAKTKNIAIFIV 210

Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233
               K G +        G   L+      L  
Sbjct: 211 GHVTKEGAL-------AGPRVLEHMVDTVLYF 235


>gi|289579176|ref|YP_003477803.1| DNA repair protein RadA [Thermoanaerobacter italicus Ab9]
 gi|297545346|ref|YP_003677648.1| DNA repair protein RadA [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|289528889|gb|ADD03241.1| DNA repair protein RadA [Thermoanaerobacter italicus Ab9]
 gi|296843121|gb|ADH61637.1| DNA repair protein RadA [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 457

 Score = 44.1 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 56/169 (33%), Gaps = 15/169 (8%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           Q   F   E + +G    D  LG GG  KG +V I G    GK+TL              
Sbjct: 57  QDVTFSEEERIRTGIEEFDRVLG-GGIVKGSLVLIGGDPGIGKSTLLFQVAGNISDE-KV 114

Query: 98  CAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
             +V  E ++  I   A ++  + + + +      E+     +  +     + ++IDS+ 
Sbjct: 115 VLYVSGEESIQQIKLRADRILKEKQRIYLLCETNIEE----IERKINDINPNFVIIDSIQ 170

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +                     + Q  +KL     +    +  I  + 
Sbjct: 171 TMYTE-------ESQTIPGSISQIRQVTQKLMEISKQKDISIFLIGHVT 212


>gi|159041856|ref|YP_001541108.1| putative circadian clock protein, KaiC [Caldivirga maquilingensis
           IC-167]
 gi|157920691|gb|ABW02118.1| putative circadian clock protein, KaiC [Caldivirga maquilingensis
           IC-167]
          Length = 287

 Score = 44.1 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG--GTCAFVDAEHA 106
            +G  GLD  +G GG  +GR   + G    GKT  +L  +    + G  G    VD  + 
Sbjct: 37  PTGIPGLDEVIG-GGLIRGRTYLVTGETGVGKTLFSLSFLINGYRLGEPGIYVSVDETYE 95

Query: 107 LDSIYARKLGVDLKNLL 123
                A + G D+  L 
Sbjct: 96  QFVNGALRFGWDINALT 112


>gi|284929307|ref|YP_003421829.1| circadian clock protein KaiC [cyanobacterium UCYN-A]
 gi|284809751|gb|ADB95448.1| circadian clock protein KaiC [cyanobacterium UCYN-A]
          Length = 504

 Score = 44.1 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 59/183 (32%), Gaps = 30/183 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       +SSG   LD   G GGF K  I+ + G   +GKT L    + +  
Sbjct: 253 MRLTQRSSNV----RISSGVQTLDEMCG-GGFLKDSIILVTGITGTGKTLLLSKFLEEGC 307

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK------------NLLISQPDTGEQALEITDML 140
                      E +   +    +   +                  +  + E  L+I    
Sbjct: 308 HQEERTILFAYEESKAQLSRNAMSWGIDFGKMEQKGLLKLLCTYPESASLEDHLQIIKSE 367

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T  + + +  + F 
Sbjct: 368 ISKFKPSRIAIDSLSALA-------------RGVTKNAFRQFIIGITGYVKQEEITVFFT 414

Query: 201 NQM 203
           N  
Sbjct: 415 NTT 417



 Score = 39.8 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ----SQKTGG 96
             +G+  + +   GLD  +  GG P GR   + G   +GKT LA+  +          G 
Sbjct: 15  ALKGVRKIRTMIDGLDE-ITHGGLPLGRTTLVSGTSGTGKTLLAIQFLYNGIKYFDYPGL 73

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLI 124
              F ++   +    A   G DL+ L+ 
Sbjct: 74  FVTFEESPDDII-ENAYSFGWDLQKLVD 100


>gi|259505925|ref|ZP_05748827.1| DNA repair protein RadA [Corynebacterium efficiens YS-314]
 gi|259166406|gb|EEW50960.1| DNA repair protein RadA [Corynebacterium efficiens YS-314]
          Length = 431

 Score = 44.1 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 65/192 (33%), Gaps = 23/192 (11%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ---SQKTGG--TCAFV 101
            +S+G   LD  LG G  P G +V + G    GK+TL L   ++    ++  G  T  +V
Sbjct: 44  SISTGIGELDRVLGSGIVP-GSVVLMAGEPGVGKSTLLLEVASRWSSMKEGDGTRTALYV 102

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
            AE +   +  R        +  +     E  L++    V      ++++DSV  +    
Sbjct: 103 TAEESAGQVRLRA--ERTNAVKDTLYLAAESNLDVVFGHVNQLKPSLLIVDSVQTMH--- 157

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
                 G                 LT+    S   ++ +  +     V         G  
Sbjct: 158 ----AAGVEGVAGGVAQSRAVTAALTTLAKTSGVPILLVGHVTKDGNV--------AGPR 205

Query: 222 ALKFYSSVRLDI 233
            L+    V L+ 
Sbjct: 206 VLEHLVDVVLNF 217


>gi|239988649|ref|ZP_04709313.1| DNA repair protein RadA [Streptomyces roseosporus NRRL 11379]
 gi|291445637|ref|ZP_06585027.1| DNA repair protein RadA [Streptomyces roseosporus NRRL 15998]
 gi|291348584|gb|EFE75488.1| DNA repair protein RadA [Streptomyces roseosporus NRRL 15998]
          Length = 470

 Score = 44.1 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 47/128 (36%), Gaps = 3/128 (2%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G +V + G    GK+TL L   A++        +V AE +  
Sbjct: 75  STGVGELDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLDVAAKAATDDHRTLYVTAEESAS 133

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +  R     +K +        E  L      +      ++V+DSV  +          G
Sbjct: 134 QVRLRA--DRIKAINDHLYLAAETDLSAVLAHLDEVKPSLLVLDSVQTVASPEIDGAPGG 191

Query: 169 ESLPGMQA 176
            +     A
Sbjct: 192 MAQVREVA 199


>gi|239942183|ref|ZP_04694120.1| DNA repair protein RadA [Streptomyces roseosporus NRRL 15998]
          Length = 423

 Score = 44.1 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 47/128 (36%), Gaps = 3/128 (2%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G +V + G    GK+TL L   A++        +V AE +  
Sbjct: 28  STGVGELDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLDVAAKAATDDHRTLYVTAEESAS 86

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +  R     +K +        E  L      +      ++V+DSV  +          G
Sbjct: 87  QVRLRA--DRIKAINDHLYLAAETDLSAVLAHLDEVKPSLLVLDSVQTVASPEIDGAPGG 144

Query: 169 ESLPGMQA 176
            +     A
Sbjct: 145 MAQVREVA 152


>gi|170100226|ref|XP_001881331.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164644010|gb|EDR08261.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 195

 Score = 44.1 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 41 IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
          + +  + V +G   LD  L  GG  +G I+EI GP  S K  +A+  ++  
Sbjct: 1  MAQQTQKVPTGIAALDKIL-QGGVSRGHILEISGPPGSPKELVAMKIVSSF 50


>gi|25029080|ref|NP_739134.1| DNA repair protein RadA [Corynebacterium efficiens YS-314]
 gi|23494367|dbj|BAC19334.1| putative DNA repair protein [Corynebacterium efficiens YS-314]
          Length = 466

 Score = 44.1 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 65/192 (33%), Gaps = 23/192 (11%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ---SQKTGG--TCAFV 101
            +S+G   LD  LG G  P G +V + G    GK+TL L   ++    ++  G  T  +V
Sbjct: 79  SISTGIGELDRVLGSGIVP-GSVVLMAGEPGVGKSTLLLEVASRWSSMKEGDGTRTALYV 137

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
            AE +   +  R        +  +     E  L++    V      ++++DSV  +    
Sbjct: 138 TAEESAGQVRLRA--ERTNAVKDTLYLAAESNLDVVFGHVNQLKPSLLIVDSVQTMH--- 192

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
                 G                 LT+    S   ++ +  +     V         G  
Sbjct: 193 ----AAGVEGVAGGVAQSRAVTAALTTLAKTSGVPILLVGHVTKDGNV--------AGPR 240

Query: 222 ALKFYSSVRLDI 233
            L+    V L+ 
Sbjct: 241 VLEHLVDVVLNF 252


>gi|158334176|ref|YP_001515348.1| circadian clock protein KaiC [Acaryochloris marina MBIC11017]
 gi|205831475|sp|Q6L8L1|KAIC_ACAM1 RecName: Full=Circadian clock protein kinase kaiC
 gi|158304417|gb|ABW26034.1| circadian clock protein KaiC [Acaryochloris marina MBIC11017]
          Length = 522

 Score = 44.1 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 61/183 (33%), Gaps = 30/183 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG   LD   G GGF K  I+ + G   +GKT L    +  + 
Sbjct: 253 MRLTQRSSNA----RVSSGVQTLDEMCG-GGFFKDSIILVTGATGTGKTLLVSKFLEDAC 307

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
           K G        E +   +        +            +L + P++   E  L+     
Sbjct: 308 KNGDRAILFAYEESRAQLSRNAYSWGIDFEEMEQKGLLKILCTYPESAGLEDHLQQIKSE 367

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 368 IAEFKPSRISIDSLSALA-------------RGVSNNAFRQFVIGVTGFAKQEEITGFFT 414

Query: 201 NQM 203
           N  
Sbjct: 415 NTT 417



 Score = 41.8 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 58/183 (31%), Gaps = 10/183 (5%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           K  + Q          +  + +   G D  +  GG P GR   + G   +GKT  A+  +
Sbjct: 3   KSNLSQYKKNDKNKVEVTKILTRIEGFDD-ISHGGIPLGRTTLVSGTSGTGKTMFAIQFL 61

Query: 89  AQSQ-KTGGTCAFVDAE--------HALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
                       FV  E        +AL   +  +  +D   L I       +  +I   
Sbjct: 62  YHGIVHFDDPAVFVTFEESPKDIIQNALSFGWDLQQLMDDGKLFILDASPDPEGQDIAGE 121

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
              S  ++ I          R  I+           A ++ + + +LT+ + +     V 
Sbjct: 122 FDLSALIERIQYAISKYQAKRVGIDSVTAIFQQYDAATVVRREIFRLTARLKQIGVTTVM 181

Query: 200 INQ 202
             +
Sbjct: 182 TTE 184


>gi|17230378|ref|NP_486926.1| circadian clock protein KaiC [Nostoc sp. PCC 7120]
 gi|54036149|sp|Q8YT40|KAIC_ANASP RecName: Full=Circadian clock protein kinase kaiC
 gi|17131980|dbj|BAB74585.1| circadian oscillation regulator [Nostoc sp. PCC 7120]
 gi|19310191|dbj|BAB85869.1| circadian clock protein KaiC [Nostoc sp. PCC 7120]
          Length = 519

 Score = 43.7 bits (101), Expect = 0.040,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 69/219 (31%), Gaps = 33/219 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG   LD   G GGF K  I+   G   +GKT L    +    
Sbjct: 251 MRLTQRSSNV----RVSSGVKTLDGMCG-GGFFKDSIILATGATGTGKTLLVSKFLQNGC 305

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
                      E +   +        +            ++ + P++   E  L+I    
Sbjct: 306 VNNERAILFAYEESRAQLSRNAYSWGIDFEELESQGLLKIICTYPESTGLEDHLQIIKSE 365

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 366 IAYFKPARIAIDSLSALA-------------RGVSNNAFRQFVIGVTGYAKQEEITGFFT 412

Query: 201 N---QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           N   Q      +      T T    +  Y  +R ++ R 
Sbjct: 413 NTTDQFMGSHSITDSHISTITDTILMLQYVEIRGEMSRA 451



 Score = 40.2 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 37 SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           Q +   G+E + +   G D  +  GG P GR   + G   +GKT L+L  +
Sbjct: 9  QQNTSGNGVEKIRTMIEGFDD-ISHGGLPVGRTTLVSGTSGTGKTLLSLQFL 59


>gi|300313046|ref|YP_003777138.1| RecA-superfamily ATPase [Herbaspirillum seropedicae SmR1]
 gi|300075831|gb|ADJ65230.1| RecA-superfamily ATPase protein [Herbaspirillum seropedicae SmR1]
          Length = 490

 Score = 43.7 bits (101), Expect = 0.040,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 55/158 (34%), Gaps = 1/158 (0%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS G    D  +G GG   G +  + G    GKT + LH I Q  K G  C  +    + 
Sbjct: 258 VSVGIPSWDKCIG-GGVVSGSLTCLLGSPGVGKTLMGLHFIEQGLKDGQQCLILGFYESP 316

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           + + A+     ++          +   ++   ++       ++ D       R  I+G  
Sbjct: 317 ERLLAKARKAGMQLDAHIDSGALQVMWQLPLEMLCDDLAKRMLDDIARRGVTRLLIDGVD 376

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           G     +Q + M   L  LT+ +           Q+  
Sbjct: 377 GLRSIVVQPQRMRPFLVALTNELRARGVTTFITEQLPY 414



 Score = 43.7 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           I ++S+G  G D  LG GG P G +  I G   SGKTTLA   I  +Q  GG    +
Sbjct: 20  ISLLSTGIAGFDEILG-GGLPAGSLYLIQGLAGSGKTTLASQ-IGWAQARGGNQVML 74


>gi|255592974|ref|XP_002535762.1| Circadian clock protein kinase kaiC, putative [Ricinus communis]
 gi|223522041|gb|EEF26619.1| Circadian clock protein kinase kaiC, putative [Ricinus communis]
          Length = 287

 Score = 43.7 bits (101), Expect = 0.040,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 55/158 (34%), Gaps = 1/158 (0%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           VS G    D  +G GG   G +  + G    GKT + LH I Q  K G  C  +    + 
Sbjct: 55  VSVGIPSWDKCIG-GGVVSGSLTCLLGSPGVGKTLMGLHFIEQGLKDGQQCLILGFYESP 113

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           + + A+     ++          +   ++   ++       ++ D       R  I+G  
Sbjct: 114 ERLLAKARKAGMQLDAHIDSGALQVMWQLPLEMLCDDLAKRMLDDIARRGVTRLLIDGVD 173

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           G     +Q + M   L  LT+ +           Q+  
Sbjct: 174 GLRSIVVQPQRMRPFLVALTNELRARGVTTFITEQLPY 211


>gi|172039629|ref|YP_001806130.1| circadian clock protein KaiC [Cyanothece sp. ATCC 51142]
 gi|171701083|gb|ACB54064.1| circadian clock protein [Cyanothece sp. ATCC 51142]
          Length = 504

 Score = 43.7 bits (101), Expect = 0.040,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 53/131 (40%), Gaps = 13/131 (9%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            ++SGS  LD   G GGF +  I+ + G   +GKT +    +A        C     E +
Sbjct: 255 RITSGSHELDRMCG-GGFFRDSIILVSGATGTGKTLMVTEFMAGGVVNDERCLIFAFEES 313

Query: 107 LDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDMLVRSGAVDIIVIDSV 154
            + ++    G  +            ++   P+T   E  L      + +   + + +DS+
Sbjct: 314 REQLFRNATGWGVDFEEMEKQGKLKVVCRYPETTGLENHLINMKETIETFKPNRVAVDSL 373

Query: 155 AALTPRAEIEG 165
           +AL   + ++G
Sbjct: 374 SALERVSTLKG 384



 Score = 43.3 bits (100), Expect = 0.061,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 3/87 (3%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + IE + +   G D  L  GG PKGR   + G   S KT  A   +A+  K G    FV
Sbjct: 7   LDYIEKLETAIPGFDF-LSEGGLPKGRATLVAGTAGSSKTVFACQFLAEGIKRGENGVFV 65

Query: 102 DAEHA--LDSIYARKLGVDLKNLLISQ 126
             E          R  G ++    + +
Sbjct: 66  TFEEPPKALRRNMRGFGWNIAQWELER 92


>gi|114669614|ref|XP_511913.2| PREDICTED: RAD51 homolog C [Pan troglodytes]
          Length = 461

 Score = 43.7 bits (101), Expect = 0.040,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 14/118 (11%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           + +    LD  LG GG P  +  EI G    GKT L +      Q         G   F+
Sbjct: 145 IITFCSALDDILG-GGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFI 203

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           D E +        +   + +L  +  +  +   E         A++   +D++ +   
Sbjct: 204 DTEGSF-------MVDRVVDLATACIEHLQLIAEKHKGEEHQKALEDFTLDNILSHIY 254


>gi|300811959|ref|ZP_07092419.1| DNA repair protein RadA [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300497076|gb|EFK32138.1| DNA repair protein RadA [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 458

 Score = 43.7 bits (101), Expect = 0.041,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 4/109 (3%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           + S  L+  LG GG   G +V I G    GK+TL L  +++  +          E A   
Sbjct: 77  TKSSELNRVLG-GGIVPGSLVLIGGDPGIGKSTLMLQIMSELAEKYKVLYVSGEESASQI 135

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
                     ++ ++  P++    +E     +     D +VIDS+  + 
Sbjct: 136 KLRADRLGLGQSPMLLYPES---NMEHIRDQIDDVKPDFVVIDSIQTMN 181


>gi|296202369|ref|XP_002748430.1| PREDICTED: DNA repair protein RAD51 homolog 3-like [Callithrix
           jacchus]
          Length = 304

 Score = 43.7 bits (101), Expect = 0.041,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 29/91 (31%), Gaps = 7/91 (7%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAF 100
            + +    LD  LG GG P  +  EI G    GKT L +      Q         G   F
Sbjct: 167 SIITFCSALDNILG-GGVPLMKTTEICGAPGIGKTQLCVQLAVDVQIPECFGGVAGEAVF 225

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +D E +        L       L    +  +
Sbjct: 226 IDTEGSFMVDRVVDLATACIQHLHLIAEKHK 256


>gi|313124355|ref|YP_004034614.1| DNA repair protein rada [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280918|gb|ADQ61637.1| DNA repair protein radA [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 458

 Score = 43.7 bits (101), Expect = 0.041,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 4/109 (3%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           + S  L+  LG GG   G +V I G    GK+TL L  +++  +          E A   
Sbjct: 77  TKSSELNRVLG-GGIVPGSLVLIGGDPGIGKSTLMLQIMSELAEKYKVLYVSGEESASQI 135

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
                     ++ ++  P++    +E     +     D +VIDS+  + 
Sbjct: 136 KLRADRLGLGQSPMLLYPES---NMEHIRDQIDDVKPDFVVIDSIQTMN 181


>gi|237715004|ref|ZP_04545485.1| replicative DNA helicase [Bacteroides sp. D1]
 gi|294645040|ref|ZP_06722767.1| replicative DNA helicase [Bacteroides ovatus SD CC 2a]
 gi|294807144|ref|ZP_06765961.1| replicative DNA helicase [Bacteroides xylanisolvens SD CC 1b]
 gi|299146737|ref|ZP_07039805.1| replicative DNA helicase [Bacteroides sp. 3_1_23]
 gi|229444837|gb|EEO50628.1| replicative DNA helicase [Bacteroides sp. D1]
 gi|292639619|gb|EFF57910.1| replicative DNA helicase [Bacteroides ovatus SD CC 2a]
 gi|294445644|gb|EFG14294.1| replicative DNA helicase [Bacteroides xylanisolvens SD CC 1b]
 gi|295087873|emb|CBK69396.1| replicative DNA helicase [Bacteroides xylanisolvens XB1A]
 gi|298517228|gb|EFI41109.1| replicative DNA helicase [Bacteroides sp. 3_1_23]
          Length = 459

 Score = 43.7 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 47/170 (27%), Gaps = 17/170 (10%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQ-------------GSIFEGIEVVSS 50
            + M+I D        L +++  +G    M+   +              +   G+  + +
Sbjct: 129 DETMDIDDSLMDAHNLLDRLEGEFGHNNHMRDMDELMTATMTEAEGRIANNINGVTGIPT 188

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--HALD 108
           G   LD      G   G +V I      GKT  ALH    +   G   A    E      
Sbjct: 189 GLADLDRM--TSGLQNGELVVIAARPGVGKTAFALHLARNAAMAGHAVAVYSLEMQGERL 246

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           +        ++            Q L              I +D   ++ 
Sbjct: 247 ADRWLTAASEVSARHWRSGTVSPQELAEARTAAADLKRLPIHVDDSTSVN 296


>gi|311744980|ref|ZP_07718765.1| DNA repair protein RadA [Algoriphagus sp. PR1]
 gi|126577487|gb|EAZ81707.1| DNA repair protein RadA [Algoriphagus sp. PR1]
          Length = 457

 Score = 43.7 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 50/148 (33%), Gaps = 5/148 (3%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           Q   +E +    +G   LD  LG GG   G +V I G    GK+TL L      +     
Sbjct: 65  QEVNYEEMPRYVTGDAELDRVLG-GGIVPGSLVLIGGEPGIGKSTLMLQIALTLKAKSVL 123

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
               +   A   + A ++     +  +      +         + +   +++VIDS+  L
Sbjct: 124 YVSGEESEAQIKMRADRMQAKNPDCYVLSETNTQH----IFQQIEALKPNLLVIDSIQTL 179

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRK 185
             +         S        + +  ++
Sbjct: 180 HSQLVESAAGSVSQVRECTAELMKFAKE 207


>gi|209944568|gb|ACI96515.1| spindle D [Drosophila simulans]
          Length = 212

 Score = 43.7 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 7/103 (6%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKL 115
           GG   G +VE+ G   +GKT + L      Q         G+  F+D            L
Sbjct: 59  GGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFIDTRQDFHPDRLMDL 118

Query: 116 GVDLK-NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            + L+       P+     +      VR   +D ++   +   
Sbjct: 119 ALKLERQYAHRVPEFKAHKMLRKIHYVRCPKLDQLMATVLICH 161


>gi|89054203|ref|YP_509654.1| DNA repair protein RadA [Jannaschia sp. CCS1]
 gi|88863752|gb|ABD54629.1| DNA replication and repair protein RadA [Jannaschia sp. CCS1]
          Length = 455

 Score = 43.7 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 52/157 (33%), Gaps = 3/157 (1%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           KG  M L    +        S+G   LD  LG GG        + G    GK+TL L   
Sbjct: 52  KGKRMILKDLRTKETPPPRQSAGVAELDRVLG-GGLVPASATLVGGDPGIGKSTLLLQAA 110

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A   + G    +V  E A   +  R   + L    +         L      + + A D+
Sbjct: 111 AAFARQGLKVIYVSGEEATAQVRMRAERLGLSESAVMLAAETN--LRDILTTLEAEAPDL 168

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
            +IDS+  +            S     +  ++   ++
Sbjct: 169 AIIDSIQTMWLDTVDSAPGSVSQVRASSHELTTFAKR 205


>gi|238855658|ref|ZP_04645958.1| DNA repair protein RadA [Lactobacillus jensenii 269-3]
 gi|260664900|ref|ZP_05865751.1| DNA repair protein RadA [Lactobacillus jensenii SJ-7A-US]
 gi|282933607|ref|ZP_06338976.1| DNA repair protein RadA [Lactobacillus jensenii 208-1]
 gi|313472552|ref|ZP_07813042.1| DNA repair protein RadA [Lactobacillus jensenii 1153]
 gi|238831724|gb|EEQ24061.1| DNA repair protein RadA [Lactobacillus jensenii 269-3]
 gi|239529990|gb|EEQ68991.1| DNA repair protein RadA [Lactobacillus jensenii 1153]
 gi|260561383|gb|EEX27356.1| DNA repair protein RadA [Lactobacillus jensenii SJ-7A-US]
 gi|281302262|gb|EFA94495.1| DNA repair protein RadA [Lactobacillus jensenii 208-1]
          Length = 458

 Score = 43.7 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 4/112 (3%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            + +    L+  LG GG   G +V I G    GK+TL L  ++              E A
Sbjct: 74  RIPTKFSELNRVLG-GGIVTGSLVLIGGDPGIGKSTLMLQIMSTLANEHKVLYVSGEESA 132

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
                         + +   P+T    +      +     D +VIDS+  + 
Sbjct: 133 SQIKLRADRLGVGDSGMYLYPET---NMSNIRDQISDLKPDFVVIDSIQTMN 181


>gi|186470765|ref|YP_001862083.1| non-specific serine/threonine protein kinase [Burkholderia phymatum
           STM815]
 gi|184197074|gb|ACC75037.1| Non-specific serine/threonine protein kinase [Burkholderia phymatum
           STM815]
          Length = 504

 Score = 43.7 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 57/155 (36%), Gaps = 11/155 (7%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G    + GP   GKTT ++     + + G    ++  +  L 
Sbjct: 259 STGVKELDALLG-GGLIPGTSTLLVGPSGVGKTTTSVRCALTALQRGEAVKYLLFDETLR 317

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
           ++ +R     L   L    D G+ +L+  D    S            A   R  +E D  
Sbjct: 318 TLMSR--SRQLDMALDGYIDNGQLSLQQIDPAEMSP--------GQFATVVREAVEQDGA 367

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             +         QA+      + +   +L ++NQ 
Sbjct: 368 SMVVLDSLNAYMQAMPGHRYLLLQMHELLSYLNQQ 402



 Score = 42.5 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +S+G  GLD  L  GG    RI  + G   +GKTTL LH +    + G +  ++
Sbjct: 17  RISTGVAGLDDVLN-GGLIPNRIYLVEGVPGAGKTTLGLHFLLDGIRRGESGLYI 70


>gi|91774027|ref|YP_566719.1| KaiC [Methanococcoides burtonii DSM 6242]
 gi|91713042|gb|ABE52969.1| KaiC domain-containing protein [Methanococcoides burtonii DSM 6242]
          Length = 243

 Score = 43.7 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 4/81 (4%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV---D 102
           E VS+G  GLD  L  GGF KG    + G   +GKT      + +    G T   +   +
Sbjct: 8   ERVSTGIRGLDEML-KGGFFKGTANVVSGKSGTGKTIFGTQFLMEGVNKGETVMCIITSE 66

Query: 103 AEHALDSIYARKLGVDLKNLL 123
              +L        G DL  L+
Sbjct: 67  ESKSLVREMQSSFGWDLDGLV 87


>gi|87307414|ref|ZP_01089559.1| hypothetical protein DSM3645_17865 [Blastopirellula marina DSM
           3645]
 gi|87290154|gb|EAQ82043.1| hypothetical protein DSM3645_17865 [Blastopirellula marina DSM
           3645]
          Length = 505

 Score = 43.7 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 11/164 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G++ LD  L  GG    RI  + G   +GKTTL +  +    + G T  +V      
Sbjct: 8   ISTGNIELDEIL-RGGLTANRIYLLDGHPGAGKTTLGMQFLLDGIRKGETGLYVSLSETR 66

Query: 108 DSIY--ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL-------T 158
             +   A+  G  L+ L I +      +L+           ++ + ++   +        
Sbjct: 67  TELEGIAKSHGWTLEGLHIHELVDPTDSLQADSQYTMFHPSEVELGETTRHMLAQVEKIN 126

Query: 159 PRAEIEGDMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           PR  +   + E  L    A    + +  L        C  +F++
Sbjct: 127 PRRVVLDSLSELRLLAQSALRYRRQILALKHFFVGRDCTAIFLD 170



 Score = 40.2 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 6/135 (4%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
               E +  + SG+  LD  LG  G   G    + GP  +GK++ +      + + G   
Sbjct: 241 PRPREHLASLLSGNASLDALLGK-GIEPGTSTLMLGPAGAGKSSCSTLFATTACRRGERA 299

Query: 99  AFVDAEHALD--SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
                + +     + ++ LG+DL+ L         +  ++    V  G    +V  SV +
Sbjct: 300 VIFAFDESRQTLILRSKGLGMDLEELES---QGLLEIRQVNPGEVSPGQFANMVRTSVQS 356

Query: 157 LTPRAEIEGDMGESL 171
                 +   + +SL
Sbjct: 357 KPDEKRVSVVVIDSL 371


>gi|11141595|gb|AAG32017.1|AF277260_1 disrupted meiotic cDNA 1 protein [Hordeum brachyantherum subsp.
           californicum]
 gi|166077985|gb|ABY81062.1| disrupted meiotic cDNA 1 protein [Elymus hystrix]
 gi|194346522|gb|ACF49701.1| disrupted meiotic cDNA 1 protein [Leymus arenarius]
 gi|194346524|gb|ACF49702.1| disrupted meiotic cDNA 1 protein [Leymus racemosus]
 gi|194360465|gb|ACF57880.1| disrupted meiotic cDNA 1 protein [Leymus racemosus]
 gi|194360469|gb|ACF57882.1| disrupted meiotic cDNA 1 protein [Leymus karelinii]
 gi|194360489|gb|ACF57892.1| disrupted meiotic cDNA 1 protein [Leymus sabulosus]
 gi|317017258|gb|ADU86031.1| disrupted meiotic cDNA 1 [Elymus enysii]
          Length = 138

 Score = 43.7 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 18/150 (12%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N++ ++  T E    +       +      ++++DSV AL          G      + 
Sbjct: 1   DNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIMDSVIALFR----VDFSGRGELAERQ 56

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR 234
           + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +R
Sbjct: 57  QKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           +           G Q   K+         +
Sbjct: 117 KGK---------GEQRVCKIFDAPNLPEGE 137


>gi|153006083|ref|YP_001380408.1| non-specific serine/threonine protein kinase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152029656|gb|ABS27424.1| Non-specific serine/threonine protein kinase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 494

 Score = 43.7 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 1/112 (0%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
            SQ         V SG   LD  LG GG  +G    + GP  +GK+T+A   +A++   G
Sbjct: 235 ASQHRTMHSSSEVLSGIAELDRLLG-GGLDRGTSTVLVGPAGTGKSTIAAQFVARAASRG 293

Query: 96  GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
              A +  + +  ++  R  G+ +      +  T E        +      D
Sbjct: 294 EKGAILCFDESPTNLLIRTTGLGIPLRSHVEAGTVEVRAVDPAEMSPGQLSD 345



 Score = 37.9 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           E V +G  GLD  L  GG  +  +  + G   +GKTT+ L  + +  + G  C ++
Sbjct: 4   ERVQTGVRGLDPILN-GGLIRNSLYLLKGAPGTGKTTIGLQFLLEGARRGEKCLYL 58


>gi|71281385|ref|YP_267849.1| DNA repair protein RadA [Colwellia psychrerythraea 34H]
 gi|71147125|gb|AAZ27598.1| putative DNA repair protein RadA [Colwellia psychrerythraea 34H]
          Length = 462

 Score = 43.7 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 79/246 (32%), Gaps = 18/246 (7%)

Query: 39  GSIFEGIEVV-----SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
                 IE +     S+G   LD  L  GG   G +  I G   +GKTTL L  +     
Sbjct: 64  SKKINEIESIDAEKRSTGIGELDRVL-CGGVTTGSVNIISGDPGAGKTTL-LSDLVARMS 121

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
                 +  AE +L     R   + L     +     E ++E     +    +   VIDS
Sbjct: 122 KTHASLYCTAEESLSQFKNRVHRLKLDYDEDNLYLLAETSVEAIIDELDKNKIKFAVIDS 181

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
           + A+            S     A+ ++Q          +   + +FI     K   + G 
Sbjct: 182 IQAVVTENANGSPGSPSQVKSSAQSLTQYC--------KQNNVTMFIIAHVNKNNEIAGP 233

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
                  +AL    +    IR + + K++          K+ +  M S     E    + 
Sbjct: 234 QTLVHIVDALLHIDTNDGQIRTLRANKNRFGDIDTVGIFKMCERGMLSVDNPSEI---FL 290

Query: 274 EGISFF 279
            G S  
Sbjct: 291 SGSSTE 296


>gi|271970311|ref|YP_003344507.1| DNA repair protein RadA [Streptosporangium roseum DSM 43021]
 gi|270513486|gb|ACZ91764.1| DNA repair protein RadA [Streptosporangium roseum DSM 43021]
          Length = 466

 Score = 43.7 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 46/128 (35%), Gaps = 6/128 (4%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD- 108
           +G   LD  LG GG   G +V + G    GK+TL L   A+  +          E A   
Sbjct: 69  TGVPELDRVLG-GGLVPGAVVLLAGEPGIGKSTLLLEAAAKIARQQTVLYITGEESAAQV 127

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            + A ++G     L ++        L      V     D++++DSV  +          G
Sbjct: 128 RVRADRIGAIQDQLYLAAETD----LSALVAHVEKVQPDLLIVDSVQTIGSAQATGVPGG 183

Query: 169 ESLPGMQA 176
            +     A
Sbjct: 184 VTQVREVA 191


>gi|148242923|ref|YP_001228080.1| circadian clock protein KaiC [Synechococcus sp. RCC307]
 gi|147851233|emb|CAK28727.1| Circadian clock protein KaiC [Synechococcus sp. RCC307]
          Length = 517

 Score = 43.7 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 11/97 (11%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-S 91
           M+L         ++ + +G  G D     GG P GR   I G   +GKT  +LH +    
Sbjct: 13  MRL-------SQVQKLPTGIEGFDDVC-KGGLPIGRSTLISGTSGTGKTVFSLHFLYNGI 64

Query: 92  QKTGGTCAFVDAEHALDSIYARK--LGVDLKNLLISQ 126
           Q       FV  E +   I       G DL++++ + 
Sbjct: 65  QHFDEPGIFVTFEESPLDILRNAASFGWDLQSMVEND 101



 Score = 42.5 bits (98), Expect = 0.099,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 61/184 (33%), Gaps = 27/184 (14%)

Query: 31  AIMQLGSQGSIFEGIEV-VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           +I  LG+         V +SSG   LD   G GGF K  I+   G   +GKT L    + 
Sbjct: 245 SIFPLGAMQLTQSSSNVRLSSGVPRLDEMCG-GGFFKDSIILATGATGTGKTLLVSKFLE 303

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEIT 137
            + +          E +   +        +            ++ + P++   E  L+I 
Sbjct: 304 DACRNKERAILFAYEESRSQLLRNATSWGIDFEQMESDGLLKIICAYPESTGLEDHLQII 363

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
              +       + IDS++AL          G S          Q +  +T    + +   
Sbjct: 364 KTEISQFKPSRMAIDSLSALA--------RGVSH-----NAFRQFVIGVTGYAKQEEIAG 410

Query: 198 VFIN 201
            F N
Sbjct: 411 FFTN 414


>gi|153005063|ref|YP_001379388.1| hypothetical protein Anae109_2202 [Anaeromyxobacter sp. Fw109-5]
 gi|152028636|gb|ABS26404.1| conserved hypothetical protein [Anaeromyxobacter sp. Fw109-5]
          Length = 246

 Score = 43.7 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 12/121 (9%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           G   +D  L  GGF +G + E+ G  +SGKT      +  +   G   A+VD    L   
Sbjct: 35  GRAEIDTLLPDGGFRRGALTELAGGPASGKTA-IALALFAALGPGALAAYVDGRGELYPP 93

Query: 111 YARKLGVDLKNLLISQPDTGEQ-----------ALEITDMLVRSGAVDIIVIDSVAALTP 159
            A  LGV+L  LL+ +P                AL   + L+ SGA D + ID   A T 
Sbjct: 94  AAAALGVELSRLLVVRPPPRAHGGGPERDPALVALWAAEALLGSGAFDAVAIDVPMARTV 153

Query: 160 R 160
           R
Sbjct: 154 R 154


>gi|159903937|ref|YP_001551281.1| circadian clock protein KaiC [Prochlorococcus marinus str. MIT
           9211]
 gi|159889113|gb|ABX09327.1| possible circadian clock protein KaiC [Prochlorococcus marinus str.
           MIT 9211]
          Length = 512

 Score = 43.7 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 59/185 (31%), Gaps = 30/185 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       +SSG   LD   G GG+ +  I+   G   +GKT L    I  + 
Sbjct: 248 MRLTQRSSNV----RISSGVPDLDEMCG-GGYFQDSIILATGATGTGKTMLVSKFIEDAY 302

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
                      E +   +        +            ++ + P++   E  L+I    
Sbjct: 303 NNKQRAILFAYEESRAQLLRNATSWGIDFEEMERDGLLKIICAYPESTGLEDHLQIIKTQ 362

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       + IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 363 ISQFKPSRMAIDSLSALA-------------RGVSLNAFRQFVIGVTGYAKQEEIAGFFT 409

Query: 201 NQMRM 205
           N    
Sbjct: 410 NTAEE 414



 Score = 41.0 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 33 MQLGSQ-GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
          MQ  +   S+   ++ + +G  G D     GG P GR   + G   +GKT L+L  +  
Sbjct: 1  MQFANNLSSLKMNLQKLPTGIEGFDDVC-QGGLPIGRSTLVSGTSGTGKTVLSLQYLHH 58


>gi|166077977|gb|ABY81058.1| disrupted meiotic cDNA 1 protein [Elymus coreanus]
 gi|194360485|gb|ACF57890.1| disrupted meiotic cDNA 1 protein [Leymus paboanus]
          Length = 138

 Score = 43.7 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 18/150 (12%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N++ ++  T E    +       +      ++++DSV AL          G      + 
Sbjct: 1   DNIIYARAYTYEHQYNLLLSLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAERQ 56

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR 234
           + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +R
Sbjct: 57  QKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           +           G Q   K+         +
Sbjct: 117 KGK---------GEQRVCKIFDAPNLPEGE 137


>gi|11141597|gb|AAG32018.1|AF277261_1 disrupted meiotic cDNA 1 protein [Psathyrostachys fragilis subsp.
           fragilis]
          Length = 138

 Score = 43.7 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 18/150 (12%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N++ ++  T E    +       +      ++++DSV AL          G      + 
Sbjct: 1   DNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAERQ 56

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR 234
           + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +R
Sbjct: 57  QKLAQMLSRLTKIADEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           +           G Q   K+         +
Sbjct: 117 KGK---------GEQRVCKIFDAPNLPEGE 137


>gi|256844494|ref|ZP_05549980.1| DNA repair protein RadA [Lactobacillus crispatus 125-2-CHN]
 gi|256613572|gb|EEU18775.1| DNA repair protein RadA [Lactobacillus crispatus 125-2-CHN]
          Length = 458

 Score = 43.7 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 62/183 (33%), Gaps = 7/183 (3%)

Query: 3   YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
           + KE   V K      A   IQ+  G    ++L       E  E + + S  L+  LG G
Sbjct: 33  FEKETEEVQKRSTKATASRLIQKT-GLNEPVKL--DKIKAEKEERIVTKSEELNRVLG-G 88

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G   G +V I G    GK+TL L  ++   +          E A             ++ 
Sbjct: 89  GIVLGSLVLIGGDPGIGKSTLMLQIMSDLSEKYKVLYVSGEESANQIKLRADRLGVGQSN 148

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           ++  P+T    +      +     D +VIDS+  +   +        S        + + 
Sbjct: 149 MLLYPETDMHDIR---EQINDVKPDFVVIDSIQTMNEPSLDSMTGSASQVREVTSELMKI 205

Query: 183 LRK 185
            + 
Sbjct: 206 AKM 208


>gi|240279406|gb|EER42911.1| DNA repair protein RAD51 [Ajellomyces capsulatus H143]
          Length = 249

 Score = 43.7 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
              +  +++GS  LD  L  GG   G I EI+G   +GK+ L+      ++         
Sbjct: 97  RNDLICITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSELSSRQNHLAKFMRKLRTLA 155

Query: 102 DAEHALDSIYARKLGVDLK 120
           D E  +  +   ++   + 
Sbjct: 156 D-EFGIAVVITNQVVAQVD 173


>gi|187918291|ref|YP_001883854.1| DNA repair protein RadA [Borrelia hermsii DAH]
 gi|119861139|gb|AAX16934.1| DNA repair protein RadA [Borrelia hermsii DAH]
          Length = 466

 Score = 43.7 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 5/119 (4%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G    D  LG  G   G  + I G    GK+T  L   +     G    ++  E ++  
Sbjct: 72  TGIEEFDRVLGA-GIVIGSAILISGEPGIGKSTFLLQISSILSLDGKNVLYLAGEESIPQ 130

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
           I  R   + + + ++   +    AL     ++ +  +D +V+DS+  L  R E++G +G
Sbjct: 131 IKLRANRLKISSDILITNEIDVDAL---IEMLANIELDFMVVDSIQTLNSR-EVQGSLG 185


>gi|82907665|gb|ABB93044.1| disrupted meiotic cDNA 1 [Triticum turgidum subsp. durum]
          Length = 138

 Score = 43.7 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 18/150 (12%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N++ ++  T E    +       +      ++++DSV AL          G      + 
Sbjct: 1   DNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDLSGRGELAERQ 56

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR 234
           + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +R
Sbjct: 57  QKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           +           G Q   K+         +
Sbjct: 117 KSK---------GEQRVCKIFDAPNLPEGE 137


>gi|20808691|ref|NP_623862.1| DNA repair protein RadA [Thermoanaerobacter tengcongensis MB4]
 gi|20517328|gb|AAM25466.1| predicted ATP-dependent serine protease [Thermoanaerobacter
           tengcongensis MB4]
          Length = 454

 Score = 43.7 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 4/115 (3%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + +G    D  LG GG  +G +V I G    GK+TL L       +   T  +V  E 
Sbjct: 72  ERIKTGIEEFDRVLG-GGIVRGSLVLIGGDPGIGKSTLLLQVAGNVSEK-FTVLYVSGEE 129

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           +      +     +           E  +++ +  +     D +++DS+  +   
Sbjct: 130 S--PQQIKLRADRILKERQDLYLLCETNIDVIEEKIEEIRPDFVIVDSIQTMYTE 182


>gi|313225159|emb|CBY20952.1| unnamed protein product [Oikopleura dioica]
          Length = 272

 Score = 43.7 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 54/163 (33%), Gaps = 18/163 (11%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQ--SQKTGGTCAFVDAEHALDSIYARKL-GVDL 119
           G P G ++E+ G   +GKT  AL T A   S        F+ +E    S    ++ G D 
Sbjct: 46  GLPAGSLIEVSGEAGTGKTCFALETAAAALSNNQKSYVLFISSEGQFPSERLLQIVGTDC 105

Query: 120 KNLLISQPDTGEQALE-----------ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
           K+          + LE           I +           +I        R E E    
Sbjct: 106 KSFSDRVLVEEVEYLENFLALIEKLPNICEKYSEIQCPIACIIVDSFTAVMRLEYERK-- 163

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           +SLP     ++      L       K  ++FINQ+   I    
Sbjct: 164 DSLPRG--DMLDGICSDLKEIAGCFKLPVLFINQVSENIDEPM 204


>gi|294630670|ref|ZP_06709230.1| DNA repair protein RadA [Streptomyces sp. e14]
 gi|292834003|gb|EFF92352.1| DNA repair protein RadA [Streptomyces sp. e14]
          Length = 470

 Score = 43.7 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 5/129 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G +V + G    GK+TL L   A++        +V  E +  
Sbjct: 75  STGVPELDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLDVAAKAADDEHRTLYVTGEESAS 133

Query: 109 SIYARKLGVD-LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
            +  R   +  L + L    +T    L      + +    ++++DSV  +          
Sbjct: 134 QVRLRADRIGALDDHLYLAAETD---LAAVLGHLDAVKPSLLILDSVQTVASPEIDGAPG 190

Query: 168 GESLPGMQA 176
           G +     A
Sbjct: 191 GMAQVREVA 199


>gi|260893796|ref|YP_003239893.1| putative circadian clock protein, KaiC [Ammonifex degensii KC4]
 gi|260865937|gb|ACX53043.1| putative circadian clock protein, KaiC [Ammonifex degensii KC4]
          Length = 281

 Score = 43.7 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 73/222 (32%), Gaps = 21/222 (9%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIA-------------LGIGGFPKGRIVEIYGPESS 78
           I++L         +  + SG  GLD               + + G P   +V + G   +
Sbjct: 3   IVRLKEMRDRIPKLFGIPSGVPGLDDLFFTVTFEEEGYRRVSLKGIPSAAVVHLTGVPDT 62

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR-KLGVDLKNLLISQPDTGEQALEIT 137
           GK+ +A          G    +V  E     +    KL     NL     + G   L++ 
Sbjct: 63  GKSLMAEQFALTQAARGFATLYVTVEVPAHFLAQGLKLRARAMNLSWETIEEGLYLLDLA 122

Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES---LPGMQARLMSQALRKLTSSISRSK 194
            M      +  +  +S+A +    EI+  + +S   L   +       +R+L   +    
Sbjct: 123 RMPEEKENIGELC-ESLARIIREEEIKACVIDSVTGLYEGRETAARTTVRRLYEVMKDHY 181

Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
              +F++Q   K            GG  +       + + ++
Sbjct: 182 QTAIFVSQ---KRSSHEEMSAEAAGGYGVSHILDCTIVLAKM 220


>gi|262409047|ref|ZP_06085592.1| replicative DNA helicase [Bacteroides sp. 2_1_22]
 gi|298483449|ref|ZP_07001626.1| replicative DNA helicase [Bacteroides sp. D22]
 gi|262353258|gb|EEZ02353.1| replicative DNA helicase [Bacteroides sp. 2_1_22]
 gi|298270397|gb|EFI11981.1| replicative DNA helicase [Bacteroides sp. D22]
          Length = 461

 Score = 43.7 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 47/170 (27%), Gaps = 17/170 (10%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQ-------------GSIFEGIEVVSS 50
            + M+I D        L +++  +G    M+   +              +   G+  + +
Sbjct: 131 DETMDIDDSLMDAHNLLDRLEGEFGHNNHMRDMDELMTATMTEAEGRIANNINGVTGIPT 190

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--HALD 108
           G   LD      G   G +V I      GKT  ALH    +   G   A    E      
Sbjct: 191 GLADLDRM--TSGLQNGELVVIAARPGVGKTAFALHLARNAAMAGHAVAVYSLEMQGERL 248

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           +        ++            Q L              I +D   ++ 
Sbjct: 249 ADRWLTAASEVSARHWRSGTVSPQELAEARTAAADLKRLPIHVDDSTSVN 298


>gi|160886236|ref|ZP_02067239.1| hypothetical protein BACOVA_04243 [Bacteroides ovatus ATCC 8483]
 gi|156108121|gb|EDO09866.1| hypothetical protein BACOVA_04243 [Bacteroides ovatus ATCC 8483]
          Length = 459

 Score = 43.7 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 47/170 (27%), Gaps = 17/170 (10%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQ-------------GSIFEGIEVVSS 50
            + M+I D        L +++  +G    M+   +              +   G+  + +
Sbjct: 129 DETMDIDDSLMDAHNLLDRLEGEFGHNNHMRDMDELMTATMTEAEGRIANNINGVTGIPT 188

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--HALD 108
           G   LD      G   G +V I      GKT  ALH    +   G   A    E      
Sbjct: 189 GLADLDRM--TSGLQNGELVVIAARPGVGKTAFALHLARNAAMAGHAVAVYSLEMQGERL 246

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           +        ++            Q L              I +D   ++ 
Sbjct: 247 ADRWLTAASEVSARHWRSGTVSPQELAEARTAAADLKRLPIHVDDSTSVN 296


>gi|328772591|gb|EGF82629.1| hypothetical protein BATDEDRAFT_34351 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 354

 Score = 43.7 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 6/81 (7%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            K  +AA   I   +  G            + +  +++GS+  D  LG GG     I E 
Sbjct: 279 EKIKDAASKLIANGFITGT-----ELAVRRKSVLRITTGSVQFDHLLG-GGVQSMSITEA 332

Query: 73  YGPESSGKTTLALHTIAQSQK 93
           +G   +GKT LA   I   + 
Sbjct: 333 FGEFRTGKTQLAHTLINDPKP 353


>gi|282877061|ref|ZP_06285904.1| DNA repair protein RadA [Prevotella buccalis ATCC 35310]
 gi|281300832|gb|EFA93158.1| DNA repair protein RadA [Prevotella buccalis ATCC 35310]
          Length = 478

 Score = 43.7 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 15/152 (9%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS--IY 111
            L+  LG GG   G I  + G    GK+TL L TI   Q T     +V  E +     + 
Sbjct: 100 ELNRVLG-GGLVSGSITLLGGEPGIGKSTLTLQTIL--QMTDKRVLYVSGEESAHQLKMR 156

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A +L     + ++   +T   +LE+    +++   +++VIDS+  +            S 
Sbjct: 157 AERLSKAESDHVVILCET---SLELIFEQIKTVKPELVVIDSIQTIATEHVESSPGSISQ 213

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQM 203
               A L       L      S   ++ I  +
Sbjct: 214 VRECAAL-------LLHFAKNSGIPVILIGHI 238


>gi|166077965|gb|ABY81052.1| disrupted meiotic cDNA 1 protein [Elymus canadensis]
          Length = 138

 Score = 43.7 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 50/150 (33%), Gaps = 18/150 (12%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N++ ++  T      +       +      ++++DSV AL          G      + 
Sbjct: 1   DNIIYARAYTYGHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAERQ 56

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR 234
           + ++Q + +LT         +   NQ+    G       P+   GG+ L    ++RL +R
Sbjct: 57  QKLAQMMSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAPTIRLMLR 116

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           +           G Q   K+         +
Sbjct: 117 KGK---------GEQRVCKIFDAPNLPEGE 137


>gi|289449802|ref|YP_003475041.1| DNA repair protein RadA [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
 gi|289184349|gb|ADC90774.1| DNA repair protein RadA [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 483

 Score = 43.7 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 60/169 (35%), Gaps = 8/169 (4%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
            G I+ L    +  + ++  SSG    D  LG G  P G IV + G    GK+TL L   
Sbjct: 80  TGTILTLAEIEA--KKVDRYSSGMAEFDRVLGGGFVP-GSIVLVGGDPGIGKSTLLLQIC 136

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+   T     +V  E +      +     LK          E + +     + +    +
Sbjct: 137 AEV-PTNNIILYVCGEES--PEQIKLRARRLKVSRKELRLLPETSFDKIAAAIITHKPSL 193

Query: 149 IVIDSVAALTPR--AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
           ++IDS+  +     A + G + +        +    +  +T  +     
Sbjct: 194 VIIDSIQTIYAEDIASVPGSVSQVRDCTAGFMRLAKMLNITMVLIGHVT 242


>gi|164657338|ref|XP_001729795.1| hypothetical protein MGL_2781 [Malassezia globosa CBS 7966]
 gi|159103689|gb|EDP42581.1| hypothetical protein MGL_2781 [Malassezia globosa CBS 7966]
          Length = 425

 Score = 43.7 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           VS+GS  +D +L  GGF KG I E+ G  ++GKT   L+    
Sbjct: 65  VSTGSSSIDDSLN-GGFAKGMISELVGESATGKTQFCLYVTVC 106


>gi|11141579|gb|AAG32009.1|AF277252_1 disrupted meiotic cDNA 1 protein [Australopyrum pectinatum]
          Length = 138

 Score = 43.7 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 51/150 (34%), Gaps = 18/150 (12%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N++ ++  T E    +       +      ++++DSV AL          G      + 
Sbjct: 1   DNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAERQ 56

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR 234
           + ++Q L +LT         +   NQ+            P+   GG+ L   +++RL +R
Sbjct: 57  QKLAQMLSRLTKIAEEFNVAVYITNQVIADPXGGMFITDPKKPAGGHVLAHAATIRLMLR 116

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           +           G Q   K+         +
Sbjct: 117 KGK---------GEQRVCKIFDAPNLPEGE 137


>gi|262047599|ref|ZP_06020554.1| DNA repair protein RadA [Lactobacillus crispatus MV-3A-US]
 gi|260572175|gb|EEX28740.1| DNA repair protein RadA [Lactobacillus crispatus MV-3A-US]
          Length = 458

 Score = 43.7 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 62/183 (33%), Gaps = 7/183 (3%)

Query: 3   YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
           + KE   V K      A   IQ+  G    ++L       E  E + + S  L+  LG G
Sbjct: 33  FEKETEEVQKRSTKATASRLIQKT-GLNEPVKL--DKIKAEKEERIVTKSEELNRVLG-G 88

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G   G +V I G    GK+TL L  ++   +          E A             ++ 
Sbjct: 89  GIVLGSLVLIGGDPGIGKSTLMLQIMSDLSEKYKVLYVSGEESANQIKLRADRLGVGQSN 148

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           ++  P+T    +      +     D +VIDS+  +   +        S        + + 
Sbjct: 149 MLLYPETDMHDIR---EQINDVKPDFVVIDSIQTMNEPSLDSMTGSASQVREVTSELMKI 205

Query: 183 LRK 185
            + 
Sbjct: 206 AKM 208


>gi|284155176|gb|ADB78689.1| disrupted meiotic cDNA 1 protein [Elymus virginicus]
          Length = 138

 Score = 43.7 bits (101), Expect = 0.048,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 18/150 (12%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N++ ++  T E    +       +      ++++DSV AL          G      + 
Sbjct: 1   DNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAKRQ 56

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR 234
           + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +R
Sbjct: 57  QKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           +           G Q   K+         +
Sbjct: 117 KGK---------GEQRVCKIFDAPNLPEGE 137


>gi|160934240|ref|ZP_02081627.1| hypothetical protein CLOLEP_03111 [Clostridium leptum DSM 753]
 gi|156866913|gb|EDO60285.1| hypothetical protein CLOLEP_03111 [Clostridium leptum DSM 753]
          Length = 427

 Score = 43.7 bits (101), Expect = 0.048,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD- 108
           +G   LD  LG GG  KG +V + G    GK+T+ L    +  KT         E     
Sbjct: 44  TGLKELDRVLG-GGIVKGSLVLLGGDPGIGKSTILLQVCQELGKTLKILYVSGEESKRQL 102

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            + A +LGV+  +L I      E  +E     +RS   D+++IDS+  +
Sbjct: 103 KLRATRLGVNSDHLYILTETDVEYIIE----AIRSEKPDLVIIDSIQTM 147


>gi|91773643|ref|YP_566335.1| KaiC [Methanococcoides burtonii DSM 6242]
 gi|91712658|gb|ABE52585.1| KaiC-domain, UPF0273 family protein [Methanococcoides burtonii DSM
           6242]
          Length = 259

 Score = 43.7 bits (101), Expect = 0.048,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 51/174 (29%), Gaps = 20/174 (11%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
            + S+ + I  V +G  G D   G GG  + R   + G   +GKT  ++  I       G
Sbjct: 8   EKISMEDEINRVKTGIPGFDELCG-GGIIRDRSYLVSGTSGAGKTNFSVQYIYNGITKYG 66

Query: 97  TCAFVDAEHALDSIYAR---KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
               + A             K   DL+ L                       +       
Sbjct: 67  ENGIIVATEERPEQIRENVMKFDWDLQALEDE----------------GKLVIIDACSTK 110

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +   +    ++    ++   M   + +Q       ++  S   + F  Q   KI
Sbjct: 111 IGIPSQEKYVDVRPFDTRSMMDQIIATQEEINAKRALIDSTTSISFYLQDPAKI 164


>gi|304313859|ref|YP_003849006.1| hypothetical protein MTBMA_c00830 [Methanothermobacter marburgensis
           str. Marburg]
 gi|302587318|gb|ADL57693.1| conserved hypothetical protein [Methanothermobacter marburgensis
           str. Marburg]
          Length = 242

 Score = 43.7 bits (101), Expect = 0.048,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 56/166 (33%), Gaps = 12/166 (7%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++ +  G  GLD    IGGFP GR V I G    GKT   L     S   G    ++ AE
Sbjct: 1   MDRLKIGISGLDD--TIGGFPMGRSVLITGEPGCGKTIFGLRFAISSCMEGYNTVYITAE 58

Query: 105 HALDSIYARK--LGVDLKNLLISQPDTGEQALEI------TDMLVRSGAVDIIVIDSVAA 156
              + ++ +    G + + L         +   I       ++ +    +       +  
Sbjct: 59  EDANDLHIQANSFGWNTQELEERGLLNFIELTGIRARITEAELSMDMDPMKGNFTKIIHD 118

Query: 157 LTPRAE--IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           + P AE  +   +G     + A         L   + +     V I
Sbjct: 119 IPPEAEVVVIDSLGGYTAKLTAYEFRNQFDLLVYELKQRGITSVII 164


>gi|308273264|emb|CBX29867.1| KaiC-like protein 1 [uncultured Desulfobacterium sp.]
          Length = 584

 Score = 43.7 bits (101), Expect = 0.049,   Method: Composition-based stats.
 Identities = 50/316 (15%), Positives = 96/316 (30%), Gaps = 35/316 (11%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E +++G   LD  L   GF +G  + + G   +GKT+L+      +   G  C +   E 
Sbjct: 254 ERIATGVPKLDTMLDGKGFYRGSTILVSGTAGTGKTSLSATFADAACLRGERCLYFAFEE 313

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +   I      + L      +    +       +      + +     +    P+  I  
Sbjct: 314 SPSQIIRNMGSIGLDLTRWVKKGLLKFYSARPSLYGLEMHL-LTFHKVIEEFDPQVFIVD 372

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
            +        A  +   L +L       K      +       +   S E ++  +    
Sbjct: 373 PISNLSSAGTAAEVKSILTRLIDFTKMKKISTFLTDLTHFTGSLEHTSEEISSLIDTWLL 432

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
              + L+  R            N+    +    MA   +  EF ++   GIS        
Sbjct: 433 LRDIELNGER------------NRGLYILKSRGMAHSNQIQEF-LLTNHGISLI------ 473

Query: 286 GVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI-EIAE--NIESLLRQNAGLVADSL 342
                I   SG         +  G   +     E   E+A    ++S LR+         
Sbjct: 474 ----DIYTGSG--------EILTGSARATQKAEEKASELARRFEVDSKLREQERKRKVLE 521

Query: 343 LQEPAINTKDDADKDD 358
            +  AI  + DA+ ++
Sbjct: 522 EKIAAIRAEFDAESEE 537



 Score = 43.3 bits (100), Expect = 0.061,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           +E   +G  GLD  +  GG P+GR   I G    GKT  A+  + +     G     
Sbjct: 13  LEKCPTGIKGLDE-ITKGGLPRGRPTLICGSAGCGKTLFAMEFLMRGAMDYGEPGVF 68


>gi|313125564|ref|YP_004035828.1| reca-superfamily ATPase possibly involved in signal transduction
           [Halogeometricum borinquense DSM 11551]
 gi|312291929|gb|ADQ66389.1| RecA-superfamily ATPase possibly involved in signal transduction
           [Halogeometricum borinquense DSM 11551]
          Length = 420

 Score = 43.7 bits (101), Expect = 0.049,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 1/78 (1%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
                   I+ +  G  GLD  + +GG PK  ++   G   +GKTT  L  +  + + G 
Sbjct: 182 DDEEFESDIDRLDIGIEGLDEMI-LGGVPKRSLMVTIGTAGTGKTTFGLQFLNHALENGE 240

Query: 97  TCAFVDAEHALDSIYARK 114
              ++  E + D I+   
Sbjct: 241 KAVYITLEESRDRIFDTA 258


>gi|111226459|ref|XP_001134538.1| hypothetical protein DDB_G0285287 [Dictyostelium discoideum AX4]
 gi|121962468|sp|Q1ZXF0|RA51D_DICDI RecName: Full=Probable DNA repair protein RAD51 homolog 4
 gi|90970585|gb|EAS66855.1| hypothetical protein DDB_G0285287 [Dictyostelium discoideum AX4]
          Length = 354

 Score = 43.7 bits (101), Expect = 0.049,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQKTGGTCAFVDAEHAL 107
           SSG   LD  LG  GF  G I E+ G  S GKT +++      SQ+      ++D+ ++ 
Sbjct: 90  SSGIKLLDQLLGGNGFTSGEIYELVGNTSCGKTQISMCCSLNLSQQYNSNIIYIDSSNSF 149

Query: 108 DSIY 111
               
Sbjct: 150 SPPR 153


>gi|33239607|ref|NP_874549.1| DNA repair protein RadA [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|33237132|gb|AAP99201.1| DNA repair protein sms, radA homolog [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 461

 Score = 43.7 bits (101), Expect = 0.049,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 8/118 (6%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + ++ +SSG   LD  LG GG   G +V I G    GK+TL L +  +      +  ++ 
Sbjct: 70  KSVKRISSGYKELDRVLG-GGLVPGSLVLIGGDPGIGKSTLLLQSATEMA-RYKSILYIT 127

Query: 103 AEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AE + + +     +LG    +L +         LE     +      + +IDS+ A+ 
Sbjct: 128 AEESSNQVQLRWNRLGKADSDLHLLAETD----LEAILNEIERFNPAVAIIDSIQAIH 181


>gi|329765171|ref|ZP_08256752.1| RecA-superfamily ATPases implicated in signal transduction
           [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329138330|gb|EGG42585.1| RecA-superfamily ATPases implicated in signal transduction
           [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 245

 Score = 43.7 bits (101), Expect = 0.050,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 4/79 (5%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQKTGGTCAFVDAEHA 106
           V +G  GLD  +  GG  K R + I GP  SGKTT  L  +   ++     C +V     
Sbjct: 8   VKTGIPGLDSIIS-GGLRKNRSIVISGPPGSGKTTFGLQFLHSGAKDFEEPCVYVSMSQN 66

Query: 107 LDSIY--ARKLGVDLKNLL 123
           +  I    +    DL +L+
Sbjct: 67  ISEIKNDCKSFSWDLDDLI 85


>gi|124026474|ref|YP_001015589.1| circadian clock protein KaiC [Prochlorococcus marinus str. NATL1A]
 gi|123961542|gb|ABM76325.1| possible circadian clock protein KaiC [Prochlorococcus marinus str.
           NATL1A]
          Length = 500

 Score = 43.7 bits (101), Expect = 0.050,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 59/185 (31%), Gaps = 30/185 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       +SSG   LD   G GG+ +  I+   G   +GKT L    +  + 
Sbjct: 237 MRLTQRSSNI----RISSGVPALDEMCG-GGYFQDSIILATGATGTGKTMLVSKFVEDAY 291

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
                      E +   +        +            ++ + P++   E  L+I    
Sbjct: 292 LNNERTILFAYEESRAQLLRNATSWGIDFEKMEADGLLKIICAYPESTGLEDHLQIIKTE 351

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       + IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 352 ISEYKPSRMAIDSLSALA-------------RGVSLNAFRQFVIGVTGYAKQEEIAGFFT 398

Query: 201 NQMRM 205
           N    
Sbjct: 399 NTAEE 403



 Score = 37.9 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 4/86 (4%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA---LHTIAQSQKTGGTCAF 100
            ++ + +G  G D     GG P  R   + G   +GKT  +   LH    +    G    
Sbjct: 2   HVQKLPTGIEGFDDIC-HGGLPNARSTLVSGTSGTGKTVFSLQYLHHGICNFDEPGIFVT 60

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQ 126
            +         A   G DL+ L+   
Sbjct: 61  FEESPLDIIRNAASFGWDLQGLIDQN 86


>gi|11141559|gb|AAG31999.1|AF277242_1 disrupted meiotic cDNA 1 protein [Aegilops comosa]
 gi|11141565|gb|AAG32002.1|AF277245_1 disrupted meiotic cDNA 1 protein [Pseudoroegneria spicata]
 gi|11141567|gb|AAG32003.1|AF277246_1 disrupted meiotic cDNA 1 protein [Lophopyrum elongatum]
          Length = 138

 Score = 43.7 bits (101), Expect = 0.050,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 18/150 (12%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N++ ++  T E    +       +      ++++DSV AL          G      + 
Sbjct: 1   DNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAERQ 56

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR 234
           + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +R
Sbjct: 57  QKLAQMLSRLTXIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           +           G Q   K+         +
Sbjct: 117 KGK---------GEQRVCKIFDAPNLPEGE 137


>gi|87123660|ref|ZP_01079510.1| possible circadian clock protein KaiC [Synechococcus sp. RS9917]
 gi|86168229|gb|EAQ69486.1| possible circadian clock protein KaiC [Synechococcus sp. RS9917]
          Length = 519

 Score = 43.7 bits (101), Expect = 0.050,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 60/181 (33%), Gaps = 30/181 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       +SSG   LD   G GGF K  I+   G   +GKT L    I  + 
Sbjct: 255 MRLTQRSSNV----RLSSGVPRLDEMCG-GGFFKDSIILATGATGTGKTLLVSKFIEDAC 309

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
           +          E +   +        +            ++ + P++   E  L+I    
Sbjct: 310 RNKERAILFAYEESRAQLLRNATSWGIDFEQMEQDGLLKIICAYPESTGLEDHLQIIKTE 369

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       + IDS++AL          G S          Q +  +T    + +    F 
Sbjct: 370 ISQFKPSRMAIDSLSALA--------RGVSH-----NAFRQFVIGVTGYAKQEEIAGFFT 416

Query: 201 N 201
           N
Sbjct: 417 N 417



 Score = 42.1 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 32 IMQLGSQGSIFE-GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
          +MQ+ S  S  +  ++ + +G  G D     GG P GR   I G   +GKT  +LH +  
Sbjct: 7  VMQISSSSSSPQMQVQKLPTGIEGFDDVC-QGGLPIGRSTLISGTSGTGKTVFSLHFLHN 65


>gi|284050560|ref|ZP_06380770.1| circadian clock protein KaiC [Arthrospira platensis str. Paraca]
 gi|291570010|dbj|BAI92282.1| circadian clock protein KaiA [Arthrospira platensis NIES-39]
          Length = 517

 Score = 43.7 bits (101), Expect = 0.051,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 72/219 (32%), Gaps = 33/219 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG   LD   G GGF K  I+   G   +GKT L    +  + 
Sbjct: 252 MRLTQRSSNI----RVSSGDKTLDEMCG-GGFFKDSIILATGATGTGKTLLVSIFVNNAC 306

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
           ++         E +   +        L            ++ S P++   E  L+I    
Sbjct: 307 QSNERAILFAYEESRAQLLRNAHSWGLDFEAMERKGLLKIICSYPESTGLEDHLQIIRSE 366

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+ +    Q +  +T    + +    F 
Sbjct: 367 ISEFKPSRIAIDSLSALA-------------RGVSSNAFRQFVIAVTGYAKQEEITGFFT 413

Query: 201 N---QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           N   Q      +      T T    +  Y  +R  + R 
Sbjct: 414 NTTDQFMGSHSITDSHISTITDTILMLQYVEIRGQMSRA 452



 Score = 39.4 bits (90), Expect = 0.77,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 51/154 (33%), Gaps = 24/154 (15%)

Query: 35  LGSQGSIFEGIEV--VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           LGS+ +  + I V  + +   G D  +  GG P GR   I G   +GKT  A+  +    
Sbjct: 6   LGSEPNKRKLISVQKIRTMIEGFDD-ISHGGMPAGRSTLISGTSGTGKTLFAVQFLYNGI 64

Query: 93  ---KTGGTCAFVDAEHALDSIYARKLGVDLK------NLLISQPDTGEQALEI------- 136
                 G     +         A   G DL+       L I       +  +I       
Sbjct: 65  TYFDEPGILVTFEEAPTDIIKNAASFGWDLQGLIDEGKLFILDASPDPEGQDIVGNFDLS 124

Query: 137 -----TDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
                    +R      + IDSV A+  + E  G
Sbjct: 125 ALIERIQYGIRKYKAKRVSIDSVTAIFQQYEAAG 158


>gi|257438300|ref|ZP_05614055.1| toprim domain protein [Faecalibacterium prausnitzii A2-165]
 gi|257199262|gb|EEU97546.1| toprim domain protein [Faecalibacterium prausnitzii A2-165]
          Length = 636

 Score = 43.7 bits (101), Expect = 0.051,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 75/232 (32%), Gaps = 15/232 (6%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKLGVDLKN 121
            P G++  + G    GKTT AL   A              E    +       LG  +K 
Sbjct: 332 IPFGKVTIVQGNPGEGKTTFALRLAAACTNRKPFPHMAAHEPFNVIYQTAEDGLGDTIKP 391

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD----MGESLPGMQAR 177
            L+      ++ L I +        D  +  ++     R  I       MGE     +A 
Sbjct: 392 RLMEAEADLDRVLVIDESKQGLSLSDERIERAIRQTGARLIILDPIQAYMGEKTDMNRAN 451

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
            +    R+L     R+ C ++ I    +       S     G    +  +   L I R  
Sbjct: 452 EVRPMFRRLADVAERTGCAVILI--GHLNKAAGGQSAYRGLGSIDFRAAARSVLLIGR-- 507

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
            +K + ++      +   K+ +A   K V F +    G S+ GE      + 
Sbjct: 508 -VKREPNV----RVIVHDKSSLAPEGKPVAFCLDPETGFSWIGEYDITADEL 554


>gi|11141543|gb|AAG31991.1|AF277234_1 disrupted meiotic cDNA 1 protein [Bromus sterilis]
 gi|11141545|gb|AAG31992.1|AF277235_1 disrupted meiotic cDNA 1 protein [Aegilops tauschii]
 gi|11141561|gb|AAG32000.1|AF277243_1 disrupted meiotic cDNA 1 protein [Amblyopyrum muticum]
 gi|11141577|gb|AAG32008.1|AF277251_1 disrupted meiotic cDNA 1 protein [Australopyrum retrofractum]
 gi|11141585|gb|AAG32012.1|AF277255_1 disrupted meiotic cDNA 1 protein [Henrardia persica]
 gi|11141593|gb|AAG32016.1|AF277259_1 disrupted meiotic cDNA 1 protein [Hordeum erectifolium]
 gi|11141599|gb|AAG32019.1|AF277262_1 disrupted meiotic cDNA 1 protein [Hordeum vulgare subsp.
           spontaneum]
 gi|31087791|gb|AAN27930.1| disrupted meiotic cDNA 1 [Hordeum marinum subsp. marinum]
 gi|31087799|gb|AAN27934.1| disrupted meiotic cDNA 1 [Hordeum euclaston]
 gi|31087809|gb|AAN27939.1| disrupted meiotic cDNA 1 [Hordeum patagonicum subsp. santacrucense]
 gi|31087811|gb|AAN27940.1| disrupted meiotic cDNA 1 [Hordeum stenostachys]
 gi|31087817|gb|AAN27943.1| disrupted meiotic cDNA 1 [Hordeum pusillum]
 gi|82907629|gb|ABB93026.1| disrupted meiotic cDNA 1 [Bromus arvensis]
 gi|82907631|gb|ABB93027.1| disrupted meiotic cDNA 1 [Aegilops bicornis]
 gi|82907633|gb|ABB93028.1| disrupted meiotic cDNA 1 [Aegilops searsii]
 gi|82907635|gb|ABB93029.1| disrupted meiotic cDNA 1 [Aegilops comosa]
 gi|82907637|gb|ABB93030.1| disrupted meiotic cDNA 1 [Aegilops umbellulata]
 gi|82907643|gb|ABB93033.1| disrupted meiotic cDNA 1 [Aegilops uniaristata]
 gi|82907645|gb|ABB93034.1| disrupted meiotic cDNA 1 [Aegilops markgrafii]
 gi|82907647|gb|ABB93035.1| disrupted meiotic cDNA 1 [Aegilops longissima]
 gi|82907651|gb|ABB93037.1| disrupted meiotic cDNA 1 [Aegilops searsii]
 gi|82907653|gb|ABB93038.1| disrupted meiotic cDNA 1 [Aegilops speltoides]
 gi|82907659|gb|ABB93041.1| disrupted meiotic cDNA 1 [Triticum turgidum subsp. dicoccoides]
 gi|82907661|gb|ABB93042.1| disrupted meiotic cDNA 1 [Triticum turgidum subsp. dicoccoides]
 gi|82907679|gb|ABB93051.1| disrupted meiotic cDNA 1 [Triticum aestivum]
 gi|166077969|gb|ABY81054.1| disrupted meiotic cDNA 1 protein [Elymus caninus]
 gi|166077973|gb|ABY81056.1| disrupted meiotic cDNA 1 protein [Elymus sibiricus]
 gi|166077975|gb|ABY81057.1| disrupted meiotic cDNA 1 protein [Elymus wawawaiensis]
 gi|166077979|gb|ABY81059.1| disrupted meiotic cDNA 1 protein [Hystrix duthiei]
 gi|166077981|gb|ABY81060.1| disrupted meiotic cDNA 1 protein [Hystrix duthiei subsp.
           longearistata]
 gi|166077983|gb|ABY81061.1| disrupted meiotic cDNA 1 protein [Elymus komarovii]
 gi|166077989|gb|ABY81064.1| disrupted meiotic cDNA 1 protein [Leymus akmolinensis]
 gi|166077991|gb|ABY81065.1| disrupted meiotic cDNA 1 protein [Leymus arenarius]
 gi|166077993|gb|ABY81066.1| disrupted meiotic cDNA 1 protein [Leymus cinereus]
 gi|166077995|gb|ABY81067.1| disrupted meiotic cDNA 1 protein [Leymus erianthus]
 gi|166077997|gb|ABY81068.1| disrupted meiotic cDNA 1 protein [Leymus innovatus]
 gi|166077999|gb|ABY81069.1| disrupted meiotic cDNA 1 protein [Leymus pseudoracemosus]
 gi|166078001|gb|ABY81070.1| disrupted meiotic cDNA 1 protein [Leymus racemosus]
 gi|166078003|gb|ABY81071.1| disrupted meiotic cDNA 1 protein [Leymus salinus]
 gi|166078005|gb|ABY81072.1| disrupted meiotic cDNA 1 protein [Leymus triticoides]
 gi|166078007|gb|ABY81073.1| disrupted meiotic cDNA 1 protein [Psathyrostachys fragilis]
 gi|166078009|gb|ABY81074.1| disrupted meiotic cDNA 1 protein [Psathyrostachys juncea]
 gi|171190302|gb|ACB42457.1| disrupted meiotic cDNA protein [Hordelymus europaeus]
 gi|171190304|gb|ACB42458.1| disrupted meiotic cDNA protein [Hordelymus europaeus]
 gi|171190306|gb|ACB42459.1| disrupted meiotic cDNA protein [Hordelymus europaeus]
 gi|171190308|gb|ACB42460.1| disrupted meiotic cDNA protein [Hordelymus europaeus]
 gi|171190310|gb|ACB42461.1| disrupted meiotic cDNA protein [Hordelymus europaeus]
 gi|171190312|gb|ACB42462.1| disrupted meiotic cDNA protein [Hordelymus europaeus]
 gi|194346526|gb|ACF49703.1| disrupted meiotic cDNA 1 protein [Leymus salinus]
 gi|194360463|gb|ACF57879.1| disrupted meiotic cDNA 1 protein [Leymus racemosus]
 gi|194360467|gb|ACF57881.1| disrupted meiotic cDNA 1 protein [Leymus karelinii]
 gi|194360471|gb|ACF57883.1| disrupted meiotic cDNA 1 protein [Leymus mollis]
 gi|194360475|gb|ACF57885.1| disrupted meiotic cDNA 1 protein [Leymus angustus]
 gi|194360477|gb|ACF57886.1| disrupted meiotic cDNA 1 protein [Leymus angustus]
 gi|194360479|gb|ACF57887.1| disrupted meiotic cDNA 1 protein [Leymus secalinus]
 gi|194360481|gb|ACF57888.1| disrupted meiotic cDNA 1 protein [Leymus secalinus]
 gi|194360487|gb|ACF57891.1| disrupted meiotic cDNA 1 protein [Leymus chinensis]
 gi|284155160|gb|ADB78681.1| disrupted meiotic cDNA 1 protein [Elymus confusus]
 gi|284155162|gb|ADB78682.1| disrupted meiotic cDNA 1 protein [Elymus multisetus]
 gi|284155164|gb|ADB78683.1| disrupted meiotic cDNA 1 protein [Elymus multisetus]
 gi|284155166|gb|ADB78684.1| disrupted meiotic cDNA 1 protein [Elymus trachycaulus]
 gi|284155170|gb|ADB78686.1| disrupted meiotic cDNA 1 protein [Elymus transhyrcanus]
 gi|284155172|gb|ADB78687.1| disrupted meiotic cDNA 1 protein [Elymus transhyrcanus]
 gi|284155178|gb|ADB78690.1| disrupted meiotic cDNA 1 protein [Elymus wawawaiensis]
 gi|317017262|gb|ADU86033.1| disrupted meiotic cDNA 1 [Elymus caucasicus]
 gi|317017270|gb|ADU86037.1| disrupted meiotic cDNA 1 [Elymus semicostatus]
 gi|317017272|gb|ADU86038.1| disrupted meiotic cDNA 1 [Elymus semicostatus]
          Length = 138

 Score = 43.7 bits (101), Expect = 0.051,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 18/150 (12%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N++ ++  T E    +       +      ++++DSV AL          G      + 
Sbjct: 1   DNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAERQ 56

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR 234
           + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +R
Sbjct: 57  QKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           +           G Q   K+         +
Sbjct: 117 KGK---------GEQRVCKIFDAPNLPEGE 137


>gi|110349621|gb|ABG73285.1| putative DMC1 protein [Leucoagaricus gongylophorus]
 gi|110349623|gb|ABG73286.1| putative DMC1 protein [Leucoagaricus gongylophorus]
 gi|110349627|gb|ABG73288.1| putative DMC1 protein [Leucoagaricus gongylophorus]
 gi|110349629|gb|ABG73289.1| putative DMC1 protein [Leucoagaricus gongylophorus]
          Length = 80

 Score = 43.3 bits (100), Expect = 0.052,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 37 SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
                + + ++S+GS  +D  LG GG     I E+YG   +GKT +A      +Q
Sbjct: 15 EVQERRKRVHIISTGSRSVDAILG-GGLMSQSITEVYGEFRTGKTQMAHTMGVVAQ 69


>gi|74316848|ref|YP_314588.1| SOS cell division inhibitor SulA [Thiobacillus denitrificans ATCC
           25259]
 gi|74056343|gb|AAZ96783.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
           25259]
          Length = 228

 Score = 43.3 bits (100), Expect = 0.052,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 1/106 (0%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEI-YGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           E +S+G   LD  L  GG+P+G + EI    E  G+  L L  +A+        A+V   
Sbjct: 26  ETLSTGFAELDAELPGGGWPRGTLTEILLEREGIGELRLLLPALARVSGQSAWLAWVAPP 85

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           H   +      G+ L+ LLI++P +   A    +  +RSGA   ++
Sbjct: 86  HVPYAPALAASGIRLERLLIARPQSPADAWWTAEQALRSGACGAVL 131


>gi|284166692|ref|YP_003404971.1| circadian clock protein, KaiC [Haloterrigena turkmenica DSM 5511]
 gi|284016347|gb|ADB62298.1| putative circadian clock protein, KaiC [Haloterrigena turkmenica
           DSM 5511]
          Length = 492

 Score = 43.3 bits (100), Expect = 0.053,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +  + SG  GLD  L  GG   GR+  + G   +GKT L +H + +  +   T  F+  E
Sbjct: 5   VSSIRSGVDGLDELL-CGGLVTGRMYLVQGKPGTGKTLLGMHFLEEGLRNDETVLFIHGE 63

Query: 105 HALDSIYARKLGVDLK 120
            + + I A    V + 
Sbjct: 64  ESREEILANGEAVGVD 79


>gi|126740428|ref|ZP_01756116.1| predicted repair protein [Roseobacter sp. SK209-2-6]
 gi|126718564|gb|EBA15278.1| predicted repair protein [Roseobacter sp. SK209-2-6]
          Length = 463

 Score = 43.3 bits (100), Expect = 0.053,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 48/142 (33%), Gaps = 3/142 (2%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           G   LD  LG G  P   I+ + G    GK+TL L   A+  ++G    +V  E A   +
Sbjct: 82  GVAELDRVLGGGLVPASAIL-VGGDPGIGKSTLLLQAAARFAQSGLKTIYVSGEEASAQV 140

Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
             R   + L    +         L      + +    + +IDS+  +            S
Sbjct: 141 RMRAQRLGLAQAPVQLAAETN--LRDILTTLEAEKPQLAIIDSIQTMWADHVDSAPGSVS 198

Query: 171 LPGMQARLMSQALRKLTSSISR 192
                A  ++   +    SI  
Sbjct: 199 QVRAAAHELTTFAKSQGISIIM 220


>gi|109080686|ref|XP_001096945.1| PREDICTED: DNA repair protein RAD51 homolog 1-like, partial [Macaca
           mulatta]
          Length = 145

 Score = 43.3 bits (100), Expect = 0.053,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
              I  +++GS  LD  L  GG   G I E++G   +GKT +        Q
Sbjct: 96  RSEIIQITTGSKELDKLL-QGGIETGSITEMFGEFRTGKTQICHTLAVTCQ 145


>gi|296121582|ref|YP_003629360.1| hypothetical protein Plim_1327 [Planctomyces limnophilus DSM 3776]
 gi|296013922|gb|ADG67161.1| conserved hypothetical protein [Planctomyces limnophilus DSM 3776]
          Length = 252

 Score = 43.3 bits (100), Expect = 0.053,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 1/100 (1%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP-ESSGKTTLALHTIAQSQKTG 95
            +G+       + +G   LD      G  +G +VE  G   SSG  T++L T  +    G
Sbjct: 25  ERGASLYSTHYLKTGCGALDTLFPGQGVRQGSLVEWLGDGNSSGAGTVSLITGWRVCPAG 84

Query: 96  GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
                +D  H L  +    LG DL  L++ +P +  +AL 
Sbjct: 85  RPLVLIDTRHDLFPLSLSLLGFDLSRLILIRPASKREALW 124


>gi|197302680|ref|ZP_03167734.1| hypothetical protein RUMLAC_01410 [Ruminococcus lactaris ATCC
           29176]
 gi|197298262|gb|EDY32808.1| hypothetical protein RUMLAC_01410 [Ruminococcus lactaris ATCC
           29176]
          Length = 344

 Score = 43.3 bits (100), Expect = 0.053,   Method: Composition-based stats.
 Identities = 55/270 (20%), Positives = 95/270 (35%), Gaps = 34/270 (12%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV----DAEHALDSI------YAR 113
            P G++  I G    GKTT+ L  IA+  +       V    D E+A   +         
Sbjct: 45  IPYGKVTIIQGDPGEGKTTMVLQIIAKLTRGEAILPTVLLTDDKENAEVPVNVIYQTAED 104

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI----IVIDSVAALTPRAEIEGDMGE 169
            LG  +K  L++      + L I D        DI     +I + A +     I+G +G 
Sbjct: 105 GLGDTIKPRLLAAGADCSKVLVIDDADQPLTMADIRLEEAIIQTKARMVVLDPIQGFLGA 164

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
            +   +A  +   ++++     +  C ++ I  M               G  ++ F ++ 
Sbjct: 165 EVDMHRANEIRPLMKRIAVLAEKYHCAIILIGHMNKNSNGKSSYR----GLGSIDFQAAA 220

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
           R  +  VG IK++         V   K+ +A   K + F +    G  + GE      + 
Sbjct: 221 RSVLI-VGRIKEEPET----RVVCHTKSSLAPEGKSIAFQLDKDNGFEWIGEYDISADEL 275

Query: 290 SIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
                        G   GQ    +K FL E
Sbjct: 276 -----------LNGDGKGQKSRKAKEFLLE 294


>gi|254166922|ref|ZP_04873776.1| KaiC domain protein [Aciduliprofundum boonei T469]
 gi|254167350|ref|ZP_04874202.1| KaiC domain protein [Aciduliprofundum boonei T469]
 gi|289596393|ref|YP_003483089.1| putative circadian clock protein, KaiC [Aciduliprofundum boonei
           T469]
 gi|197623613|gb|EDY36176.1| KaiC domain protein [Aciduliprofundum boonei T469]
 gi|197624532|gb|EDY37093.1| KaiC domain protein [Aciduliprofundum boonei T469]
 gi|289534180|gb|ADD08527.1| putative circadian clock protein, KaiC [Aciduliprofundum boonei
           T469]
          Length = 266

 Score = 43.3 bits (100), Expect = 0.054,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E   +G  GLD  L  GG P+G  + I G   +GKTTL+L  + +    G    ++    
Sbjct: 24  ERCKTGIEGLDNILN-GGIPRGNTILITGSCGTGKTTLSLEFLTRGALMGERSMYISVTE 82


>gi|110349625|gb|ABG73287.1| putative DMC1 protein [Leucoagaricus gongylophorus]
          Length = 79

 Score = 43.3 bits (100), Expect = 0.054,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 37 SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
                + + ++S+GS  +D  LG GG     I E+YG   +GKT +A      +Q
Sbjct: 14 EVQERRKRVHIISTGSRSVDAILG-GGLMSQSITEVYGEFRTGKTQMAHTMGVVAQ 68


>gi|82907639|gb|ABB93031.1| disrupted meiotic cDNA 1 [Triticum urartu]
 gi|82907641|gb|ABB93032.1| disrupted meiotic cDNA 1 [Triticum urartu]
 gi|82907667|gb|ABB93045.1| disrupted meiotic cDNA 1 [Triticum turgidum subsp. turgidum]
 gi|82907669|gb|ABB93046.1| disrupted meiotic cDNA 1 [Triticum turgidum subsp. dicoccoides]
 gi|82907671|gb|ABB93047.1| disrupted meiotic cDNA 1 [Triticum turgidum subsp. dicoccoides]
 gi|82907673|gb|ABB93048.1| disrupted meiotic cDNA 1 [Triticum turgidum subsp. durum]
 gi|82907677|gb|ABB93050.1| disrupted meiotic cDNA 1 [Triticum aestivum]
          Length = 138

 Score = 43.3 bits (100), Expect = 0.054,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 18/150 (12%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N++ ++  T E    +       +      ++++DSV AL          G      + 
Sbjct: 1   DNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAERQ 56

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR 234
           + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +R
Sbjct: 57  QKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           +           G Q   K+         +
Sbjct: 117 KSK---------GEQRVCKIFDAPNLPEGE 137


>gi|284036798|ref|YP_003386728.1| circadian clock protein, KaiC [Spirosoma linguale DSM 74]
 gi|283816091|gb|ADB37929.1| putative circadian clock protein, KaiC [Spirosoma linguale DSM 74]
          Length = 569

 Score = 43.3 bits (100), Expect = 0.054,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 52/156 (33%), Gaps = 12/156 (7%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E VSSG   LD  L   GF KG  + I G   +GKT++A     ++      C +   E 
Sbjct: 257 ERVSSGIPALDKMLDGQGFFKGSSILISGTAGTGKTSIAASFANEACLRNERCIYFAFEE 316

Query: 106 ALDSI--------YARKLGVDLKNLLISQPDTGEQALEI----TDMLVRSGAVDIIVIDS 153
           +   I        +  +  +D   L           LE+        ++     ++++D 
Sbjct: 317 SSFQIIRNMRSIGFDLQTHIDKGLLKFQASRPTLNGLEMHLVAIHKQIKEFKPSVVILDP 376

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
           +  L     +       +  +      Q     T+ 
Sbjct: 377 ITNLITVGSVSDVKSMLIRLIDFLQAEQITVLFTAL 412



 Score = 37.9 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 33 MQLGSQGSIFEGIEVVS---SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
          M L +  +    +  +    +G  GLD  +  GG PKGR   I G    GKT  ++  I 
Sbjct: 1  MSLETANTPNSYLSSLPKTLTGITGLDE-ITKGGLPKGRPTLICGSAGCGKTLFSIEFIV 59

Query: 90 Q 90
          +
Sbjct: 60 R 60


>gi|222530391|ref|YP_002574273.1| DnaB domain-containing protein helicase domain-containing protein
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222457238|gb|ACM61500.1| DnaB domain protein helicase domain protein [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 431

 Score = 43.3 bits (100), Expect = 0.054,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 14/99 (14%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           ++  +D  K L A    I+++Y  G              I  V +G   LD    I G  
Sbjct: 132 QVTSLDMDKLLVAYYEHIEKLYSSG------------GKIAGVPTGYQTLDEL--INGLQ 177

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           KG +  +    S GKTTLA++    + + G +  ++D E
Sbjct: 178 KGTMTVLAARPSMGKTTLAVNIATNAIRDGYSVLYIDTE 216


>gi|82907655|gb|ABB93039.1| disrupted meiotic cDNA 1 [Triticum turgidum subsp. durum]
 gi|82907657|gb|ABB93040.1| disrupted meiotic cDNA 1 [Triticum turgidum subsp. turgidum]
 gi|82907663|gb|ABB93043.1| disrupted meiotic cDNA 1 [Triticum turgidum subsp. durum]
 gi|82907675|gb|ABB93049.1| disrupted meiotic cDNA 1 [Triticum aestivum]
          Length = 138

 Score = 43.3 bits (100), Expect = 0.054,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 18/150 (12%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N++ ++  T E    +       +      ++++DSV AL          G      + 
Sbjct: 1   DNIIYARAYTYEHQYNLLLGLVAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAERQ 56

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR 234
           + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +R
Sbjct: 57  QKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           +           G Q   K+         +
Sbjct: 117 KGK---------GEQRICKIFDAPNLPEGE 137


>gi|16444955|dbj|BAB70685.1| AtRAD51Cbeta [Arabidopsis thaliana]
          Length = 241

 Score = 43.3 bits (100), Expect = 0.054,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 8/116 (6%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGG 96
           E +  +++    LD  LG GG     + EI G    GKT + +      Q        GG
Sbjct: 100 ESLPRITTSCSDLDNILG-GGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPRECGGLGG 158

Query: 97  TCAFVDAEHALDSIYARKLGVD-LKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
              ++D E +     A ++    ++++        +        +     ++ I  
Sbjct: 159 KAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIFY 214


>gi|313240112|emb|CBY32464.1| unnamed protein product [Oikopleura dioica]
          Length = 274

 Score = 43.3 bits (100), Expect = 0.055,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 55/163 (33%), Gaps = 18/163 (11%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQ--SQKTGGTCAFVDAEHALDSIYARKL-GVDL 119
           G P G ++E+ G   +GKT  AL T A+  S        F+ +E    S    ++ G D 
Sbjct: 46  GLPAGSLIEVSGEAGTGKTCFALETAAEALSNNQKSYVLFISSEGQFPSERLLQIVGTDC 105

Query: 120 KNLLISQPDTGEQALE-----------ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
           K+          + LE           I +           +I        R E   +  
Sbjct: 106 KSFSDRVLVEEVEYLENFLALIEKLPNICEKYSEIQCPIACIIVDSVTAVMRLEY--EPK 163

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           +SLP     ++      L       K  ++FINQ+   I    
Sbjct: 164 DSLPRG--DMLDGICSDLKEIAGCFKLPVLFINQVSENIDEPM 204


>gi|166077971|gb|ABY81055.1| disrupted meiotic cDNA 1 protein [Elymus caninus]
          Length = 138

 Score = 43.3 bits (100), Expect = 0.057,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 18/150 (12%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N++ ++  T E    +       +      ++++DSV AL          G      + 
Sbjct: 1   DNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAERQ 56

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF--GSPETTTGGNALKFYSSVRLDIR 234
           + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +R
Sbjct: 57  QKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMLITDPKKPAGGHVLAHAATIRLMLR 116

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           +           G Q   K+         +
Sbjct: 117 KGK---------GEQRVCKIFDAPNLPEGE 137


>gi|145219771|ref|YP_001130480.1| DNA repair protein RadA [Prosthecochloris vibrioformis DSM 265]
 gi|145205935|gb|ABP36978.1| DNA repair protein RadA [Chlorobium phaeovibrioides DSM 265]
          Length = 456

 Score = 43.3 bits (100), Expect = 0.057,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 5/110 (4%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   LD  LG GG  K   + + G    GK+TL LH  A            +       
Sbjct: 73  TGIGELDRVLG-GGLMKASAILVGGEPGIGKSTLMLHLAACLSPAKILYISGEESPNQIR 131

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             A+++ V   NL ++        LE    L+      ++++DS+  +  
Sbjct: 132 ERAQRMQVKADNLWLAPETD----LEAILALIEKEQPALVIVDSIQTVHS 177


>gi|325273524|ref|ZP_08139759.1| non-specific serine/threonine protein kinase [Pseudomonas sp.
           TJI-51]
 gi|324101348|gb|EGB98959.1| non-specific serine/threonine protein kinase [Pseudomonas sp.
           TJI-51]
          Length = 481

 Score = 43.3 bits (100), Expect = 0.058,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 57/160 (35%), Gaps = 8/160 (5%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI--AQSQKTGGTCAFV 101
            +  V+SG    D  LG GG   G +  + GP   GK++L L  +  + +Q  G    F 
Sbjct: 239 NVGRVTSGVPTFDEMLG-GGLANGSVSLLIGPSGIGKSSLCLAFLGASTAQAPGLHFGFY 297

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           +    L    A  LG D   +  S      Q             V   +++ VAA+  + 
Sbjct: 298 ETPERL-RSKAASLGYDFAAMEQS---GSLQLCWQPTTEGLLDQVGARLLERVAAVGSKR 353

Query: 162 EIEGDMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            +   +G  S        ++   R LT  +      ++  
Sbjct: 354 VVIDSLGAFSRLATDPARLNAFFRALTGELCARGVSVMLT 393



 Score = 38.7 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 1/77 (1%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + + +  + +G  GLD  L  GG   G    + GP  +GKT LA        + GG    
Sbjct: 1   MAQALRRLITGIDGLDALL-RGGLVAGASYIVQGPPGAGKTILANQLAHNHVRDGGRVLV 59

Query: 101 VDAEHALDSIYARKLGV 117
                       + L  
Sbjct: 60  ATLLSESHERLFQYLST 76


>gi|317473503|ref|ZP_07932795.1| hypothetical protein HMPREF1011_03145 [Anaerostipes sp. 3_2_56FAA]
 gi|316899014|gb|EFV21036.1| hypothetical protein HMPREF1011_03145 [Anaerostipes sp. 3_2_56FAA]
          Length = 336

 Score = 43.3 bits (100), Expect = 0.058,   Method: Composition-based stats.
 Identities = 50/272 (18%), Positives = 91/272 (33%), Gaps = 37/272 (13%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE-----------HALDSIYA 112
            P G++  I G    GKTT+ L  IA+  K     +  D E           + +     
Sbjct: 35  IPYGKVTIIQGDPGEGKTTMVLQIIAKLTKGKPVLSVKDGEEEPAENVGEPVNVIFQTAE 94

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM----G 168
             LG  +K  L+S      + L I D       +D  +  ++     R  +   +    G
Sbjct: 95  DGLGDTIKPRLLSAGADCSKVLVIDDSEQPLTMLDERLEQAIRQTNARLVVLDPIQSFLG 154

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
             +   +A  +   +++++    +  C +V I              + +TG ++ +   S
Sbjct: 155 AEVDMHRANEIRPLMKRVSVLAEKYHCAIVLI----------GHMNKNSTGKSSYRGLGS 204

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKV-VKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287
           +         +         +TRV   VK+ +A   K + F +    G  + GE      
Sbjct: 205 IDFQAAARSVLVVGRVKNEPETRVVCHVKSSLAPEGKSIAFRLDKENGFEWVGEYDINAD 264

Query: 288 KASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
                          G   GQ  + +K FL E
Sbjct: 265 DL-----------LSGNNRGQKIKEAKEFLLE 285


>gi|298675637|ref|YP_003727387.1| putative circadian clock protein KaiC [Methanohalobium evestigatum
           Z-7303]
 gi|298288625|gb|ADI74591.1| putative circadian clock protein, KaiC [Methanohalobium evestigatum
           Z-7303]
          Length = 259

 Score = 43.3 bits (100), Expect = 0.058,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 50/171 (29%), Gaps = 14/171 (8%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
            + S+ +    V +G  G D   G GG  + R   I G   +GKT   +  I       G
Sbjct: 8   EEISMDDAENRVKTGIPGFDELCG-GGLIRDRTYLISGTSGAGKTNFGIQFIYNGITKYG 66

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
               + A          ++  ++           ++            A+       +  
Sbjct: 67  ENGIIIATE----ERPEQIRKNVSKFGWDLKKLEDE---------GKLAIIDACSTKIGV 113

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
            +    ++    +    +   + +Q       +I  S   + F  Q   KI
Sbjct: 114 PSQEKYVDVRPFDIRSMLDQIITTQEQINAKRAIVDSTTSISFFLQEPAKI 164


>gi|328780222|ref|XP_003249771.1| PREDICTED: DNA repair protein RAD51 homolog 4-like [Apis mellifera]
          Length = 291

 Score = 43.3 bits (100), Expect = 0.059,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 59/204 (28%), Gaps = 23/204 (11%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-GGTCAFVDAEHALDSIYARK 114
           D  L  GG   G+I EI G  +SGKT L                 ++D +         +
Sbjct: 60  DNLL-KGGLYCGQIYEICGLSASGKTQLCFSIAINIALKSNNLVRYIDTKRDFSGSRIEQ 118

Query: 115 -----------LGVDLKNLLISQPDTGEQALEITD-------MLVRSGAVDIIVIDSVAA 156
                      +   ++ + +       Q L++                  II+IDS+ A
Sbjct: 119 ILLKKNYNKQVINEIMERIKVCCVYNMHQLLKVLHWLSINLKEENEDCRTRIIIIDSLPA 178

Query: 157 LTPR--AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           L  +   + +  +  +        +++    L+            IN+            
Sbjct: 179 LIFKFSKDHKTTIILNHLANICHFLAKEFN-LSIISVNLISQWNNINEEGTSASSNENIL 237

Query: 215 ETTTGGNALKFYSSVRLDIRRVGS 238
              T G       + RL + +   
Sbjct: 238 IKPTLGKYWAHVPNTRLLLEKQEL 261


>gi|284006337|emb|CBA71572.1| DNA repair protein RadA [Arsenophonus nasoniae]
          Length = 462

 Score = 43.3 bits (100), Expect = 0.059,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 58/153 (37%), Gaps = 8/153 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E +   S+     D  LG GG   G  + I G   +GK+TL L T+ +         +V
Sbjct: 72  LEALPRFSTDFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTMCRLSSQ-MKTLYV 129

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+   NL +    + EQ   + +         ++VIDS+  +  
Sbjct: 130 TGEESLQQVAMRAHRLGLPSDNLNMLSETSIEQICLLAE----QEQPKLMVIDSIQVMHM 185

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                     +     A  +++  +    +I  
Sbjct: 186 TDIQSSPGSVAQVRETAAYLTRFAKTRGIAIIM 218


>gi|156846832|ref|XP_001646302.1| hypothetical protein Kpol_1032p38 [Vanderwaltozyma polyspora DSM
          70294]
 gi|156116977|gb|EDO18444.1| hypothetical protein Kpol_1032p38 [Vanderwaltozyma polyspora DSM
          70294]
          Length = 422

 Score = 43.3 bits (100), Expect = 0.059,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 33 MQLG--SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
          M LG      I   IE + SG   LD  L   GF    I EIYGP   GKT L L  ++ 
Sbjct: 1  MSLGISLSQLISSKIEPIKSGIEELDECLED-GFQSRSIYEIYGPPGIGKTRLGLQVMSN 59

Query: 91 S 91
           
Sbjct: 60 F 60


>gi|328703465|ref|XP_003242214.1| PREDICTED: DNA repair protein RAD51 homolog 4-like [Acyrthosiphon
           pisum]
          Length = 160

 Score = 43.3 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQKTGGTCAFVDAEHA 106
           + +G L LD  L  GG   G I E+ GP + GKT L +  +      T     ++D  + 
Sbjct: 79  IQTGILKLDNLLN-GGLFVGNIYELCGPSACGKTQLCISILLNIIITTKKDIVYIDTRNK 137

Query: 107 LDSIYARKLGVDLKN 121
                 +++  +   
Sbjct: 138 FSVKRIKQVLKNKNM 152


>gi|269126535|ref|YP_003299905.1| ABC transporter-like protein [Thermomonospora curvata DSM 43183]
 gi|268311493|gb|ACY97867.1| ABC transporter related protein [Thermomonospora curvata DSM 43183]
          Length = 264

 Score = 43.3 bits (100), Expect = 0.061,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 35/104 (33%), Gaps = 21/104 (20%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L A   QI +VYG G          +             LD      G P+GR   I GP
Sbjct: 20  LAARAQQITKVYGSG-------DARVV-----------ALDEV--TLGIPRGRFTAIMGP 59

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAE-HALDSIYARKLGVD 118
             SGK+TL            G     D E + L+     +L  D
Sbjct: 60  SGSGKSTLMHCMAGLDSVDSGRVFIGDVELNRLNDKRLTRLRRD 103


>gi|11141563|gb|AAG32001.1|AF277244_1 disrupted meiotic cDNA 1 protein [Peridictyon sanctum]
 gi|11141569|gb|AAG32004.1|AF277247_1 disrupted meiotic cDNA 1 protein [Festucopsis serpentini]
 gi|11141589|gb|AAG32014.1|AF277257_1 disrupted meiotic cDNA 1 protein [Hordeum marinum]
 gi|11141603|gb|AAG32021.1|AF277264_1 disrupted meiotic cDNA 1 protein [Psathyrostachys stoloniformis]
          Length = 138

 Score = 43.3 bits (100), Expect = 0.061,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 18/150 (12%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N++ ++  T E    +       +      ++++DSV AL          G      + 
Sbjct: 1   DNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAERQ 56

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR 234
           + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +R
Sbjct: 57  QKLAQMLSRLTXXAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           +           G Q   K+         +
Sbjct: 117 KGK---------GEQRVCKIFDAPNLPEGE 137


>gi|299473268|emb|CBN77668.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 416

 Score = 43.3 bits (100), Expect = 0.061,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V++GS  LD  L   G     +VE+ G  SSGKT L L     +   G    ++D  +  
Sbjct: 159 VTTGSDSLDNLL-CKGLMLHHVVEVVGRSSSGKTQLCLTAAVAAASHGIGVLYIDTANGC 217

Query: 108 DSIYARKLGV 117
                +++  
Sbjct: 218 SVRRMQQIAR 227


>gi|154340868|ref|XP_001566387.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063710|emb|CAM39895.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 634

 Score = 43.3 bits (100), Expect = 0.061,   Method: Composition-based stats.
 Identities = 18/33 (54%), Positives = 22/33 (66%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           S+G LGLD ALG  GF  G + E+YG   +GKT
Sbjct: 266 STGCLGLDQALGGRGFRSGWVTEVYGEAGAGKT 298


>gi|119872165|ref|YP_930172.1| putative circadian clock protein, KaiC [Pyrobaculum islandicum DSM
           4184]
 gi|119673573|gb|ABL87829.1| putative circadian clock protein, KaiC [Pyrobaculum islandicum DSM
           4184]
          Length = 258

 Score = 43.3 bits (100), Expect = 0.062,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 86/250 (34%), Gaps = 11/250 (4%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV---D 102
           E   +G  GLD+ +G GGF +GR   I G   + KT  AL  + Q     G        D
Sbjct: 9   ETTPTGIEGLDVTIG-GGFIRGRTYLISGETGTAKTLTALTFLIQGALKYGEPGIYISVD 67

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
             +      AR+ G D++ L                  +R      I    VA++  R  
Sbjct: 68  ETYEQFVEGARRFGWDIEELRAKGLIEVLVPEMDIVERIREKDPTAIAKSLVASI--REY 125

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
           +     + L       +    + +   + R    ++ ++  R        + E  +G  A
Sbjct: 126 VVALNAQRLVIDPIAPLVSLDKDVQ--VLREYIRVLVMSIEREIGTTNIITTEIPSGSGA 183

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282
           +  Y         V  +    +  GN  RV  ++    SP     ++I   E +   G +
Sbjct: 184 ISRYGVEEFLATGVFIMGIAKTRDGNFKRVMFIRKMRWSPVHPGIYEI---EIVPKIGVV 240

Query: 283 IDLGVKASIV 292
           +   VK  +V
Sbjct: 241 VKGQVKEPLV 250


>gi|146282703|ref|YP_001172856.1| signal transduction ATPase [Pseudomonas stutzeri A1501]
 gi|145570908|gb|ABP80014.1| RecA-superfamily ATPase implicated in signal transduction
           [Pseudomonas stutzeri A1501]
 gi|327480962|gb|AEA84272.1| signal transduction ATPase [Pseudomonas stutzeri DSM 4166]
          Length = 470

 Score = 43.3 bits (100), Expect = 0.062,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 63/165 (38%), Gaps = 26/165 (15%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           +EA LSQ        A + LG +        ++ +G  GLD ALG G   +     + GP
Sbjct: 224 IEALLSQPT------APLSLGER--------MLPTGIGGLDEALGGGFIERSA-TLVIGP 268

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFV---DAEHALDSIYARKLG-------VDLKNLLIS 125
             +GKTT AL+ +A +        F      E  L      +LG         L      
Sbjct: 269 SGAGKTTFALNFLAGAAPDEHGAFFGFVESPEQLLRKSGQLELGLEKPVEQGRLDFHWQP 328

Query: 126 QPDTGEQALEI-TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
                   + +     +R   +  IVID++AALT  +  +G   E
Sbjct: 329 TTQFIPDRMALDMLARIRHKQLSRIVIDTLAALTRPSLQQGRQLE 373



 Score = 39.1 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +E + SG  GLD A+  GGF  G    I G   SGKT  A          GG   F 
Sbjct: 1   MKALERLESGIDGLD-AITHGGFVAGAAYLIQGRPGSGKTIFANQVAFHHTAQGGKVIFA 59

Query: 102 D 102
            
Sbjct: 60  S 60


>gi|290958385|ref|YP_003489567.1| DNA repair protein [Streptomyces scabiei 87.22]
 gi|260647911|emb|CBG71016.1| putative DNA repair protein [Streptomyces scabiei 87.22]
          Length = 469

 Score = 43.3 bits (100), Expect = 0.063,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 7/130 (5%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           ++G   LD  LG GG   G +V + G    GK+TL L   A++        +V  E +  
Sbjct: 74  TTGVPELDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLDVAAKAADAENPTLYVTGEESAS 132

Query: 109 SIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
            +  R  ++G    +L ++        L   D +  S    ++++DSV  +         
Sbjct: 133 QVRLRADRIGALHDHLYLAAETDLSAVLGHLDAVKPS----LLILDSVQTVASPEIDGAP 188

Query: 167 MGESLPGMQA 176
            G +     A
Sbjct: 189 GGMAQVREVA 198


>gi|238482727|ref|XP_002372602.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
 gi|220700652|gb|EED56990.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
          Length = 362

 Score = 43.3 bits (100), Expect = 0.063,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 83/289 (28%), Gaps = 80/289 (27%)

Query: 50  SGSLGLDIA--------------LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
           +G   LD A              +   G P G + E+            L     + + G
Sbjct: 39  TGIPQLDEAIRPPSADVLGRTCDINSNGIPCGHVTEV------------LSVATSALRNG 86

Query: 96  GTCAFVDAEHALDSIYARKL-------------GVDLKNLLISQPDTGEQALEIT---DM 139
               ++D    L  +    +                +KNL+     +    L +      
Sbjct: 87  DKVIWIDTGSPLPKVRLASMLKKSPDATSSDLPEDPIKNLIYFHARSLPHLLALLIRPPK 146

Query: 140 LVRSGAVDIIVIDSVAALT--------------PRAEIEGDMG-ESLPGMQARLMSQALR 184
                   ++VIDSV+ L               P++ I   M  + L   +  + S    
Sbjct: 147 GFPPADAKLLVIDSVSGLFPSYFPNPSEFKSRLPQSGITDKMQIQWLMNRKWNVTSDLGN 206

Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTT-GGNALKFYSSVRLDIRRVGSIKDKD 243
           +L    +     ++ +NQ   +I     +       G   +    VR+ I R    +D+ 
Sbjct: 207 QLVKLAATHGLAILLVNQTHTRIRGQPRATLCPVLAGGTWENSVHVRIAIFRDFLPEDEG 266

Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
              G                      + + E +   G+ + L +  +IV
Sbjct: 267 DSKG----------------------VHFAEVMKRAGKTLSLRLDENIV 293


>gi|170742827|ref|YP_001771482.1| non-specific serine/threonine protein kinase [Methylobacterium sp.
           4-46]
 gi|168197101|gb|ACA19048.1| Non-specific serine/threonine protein kinase [Methylobacterium sp.
           4-46]
          Length = 507

 Score = 43.3 bits (100), Expect = 0.063,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 56/163 (34%), Gaps = 22/163 (13%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
             +S+G +GLD  L  GG    R+  + G   +GKTTLAL  +      G    +V    
Sbjct: 14  PRISTGVVGLDDVL-CGGLTPSRLYLLEGNPGTGKTTLALQFLRDGAGRGERTLYVTLSE 72

Query: 106 ALDSIYARKL--GVDLKNLLISQ-----------PDTGEQALEI--------TDMLVRSG 144
             D + +     G  L  + + +             +     EI            V   
Sbjct: 73  TADELRSAAATHGWALDGIEVYELVNEMGLDPDGEQSILHPSEIELGETVKEVIARVDDL 132

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
             D +V DS++ L   A+        +  ++    ++A   L 
Sbjct: 133 RPDRVVFDSLSELRLLAQNPLRYRRQILALKQFFATRACTVLM 175


>gi|11498381|ref|NP_069609.1| hypothetical protein AF0775 [Archaeoglobus fulgidus DSM 4304]
 gi|2649833|gb|AAB90463.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 253

 Score = 43.3 bits (100), Expect = 0.063,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV--D 102
           +E + SG +GLD  LG GGF K  +  + G    GKT   ++ + +  + G  C +   D
Sbjct: 2   LERIKSGVIGLDEILG-GGFIKNTVNAVVGGMGCGKTIFCMNYLLEGLENGEKCMYASPD 60

Query: 103 AEHALDSIYARKLGVDLKNLLIS 125
            +       A  +  D    + +
Sbjct: 61  LDVDEFLRLAESMHWDFSKYIDN 83


>gi|16263579|ref|NP_436372.1| hypothetical protein SMa2061 [Sinorhizobium meliloti 1021]
 gi|14524284|gb|AAK65784.1| conserved hypothetical protein [Sinorhizobium meliloti 1021]
          Length = 481

 Score = 43.3 bits (100), Expect = 0.063,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 1/79 (1%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
             +  +   VVSSG  GLD  L  GG P   +  + G   SGKTT AL  +      G  
Sbjct: 2   NVAERKKQTVVSSGISGLDEIL-RGGLPASNLYIVQGAPGSGKTTAALQFLRAGVALGEP 60

Query: 98  CAFVDAEHALDSIYARKLG 116
           C +V        + A  L 
Sbjct: 61  CIYVSLSQTRAELEAIALS 79


>gi|329955709|ref|ZP_08296617.1| replicative DNA helicase [Bacteroides clarus YIT 12056]
 gi|328526112|gb|EGF53136.1| replicative DNA helicase [Bacteroides clarus YIT 12056]
          Length = 458

 Score = 43.3 bits (100), Expect = 0.064,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 83/271 (30%), Gaps = 56/271 (20%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +D+ ++M+ +     ++  L Q+              Q S   GI  + +G   LD    
Sbjct: 153 IDHLRDMDTL-----MDDTLQQVD-----------ARQASGINGITGIPTGLADLDRL-- 194

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE---HALDSIYARKLGV 117
             G+ +G +  I    + GKT  ALH    +   G   A    E     L   +      
Sbjct: 195 TSGWQRGDLNVIAARPAVGKTAFALHLARAAATAGHHVAVYSLEMQGERLGDRWLVAASP 254

Query: 118 DLKNLL----------ISQPDTGEQALEITDMLVRSGAVDII--VIDSVAALTPR----- 160
           D+              + Q       L +  + V    V  +  V  S   L  +     
Sbjct: 255 DVNARHLRGGQLTADEVEQVRRAATGLRVLPIHVDDHPVTSMDRVRSSARMLQSKGKCDM 314

Query: 161 -----AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
                 ++     +     + + ++Q  RK           ++ ++Q+            
Sbjct: 315 IILDYLQLCDMKSDQKNRNREQEVAQTTRKAKLMAKELNVPVLLLSQLNR---------- 364

Query: 216 TTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
              G +   F   +  D+R  G+I+    + 
Sbjct: 365 ---GSDGRPFSRPILSDLRESGAIEQDADMV 392


>gi|11141601|gb|AAG32020.1|AF277263_1 disrupted meiotic cDNA 1 protein [Psathyrostachys fragilis subsp.
           villosus]
          Length = 138

 Score = 43.3 bits (100), Expect = 0.064,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 51/150 (34%), Gaps = 18/150 (12%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
             ++ ++  T E    +       +      ++++DSV AL          G      + 
Sbjct: 1   DXIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAERQ 56

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR 234
           + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +R
Sbjct: 57  QKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           +           G Q   K+         +
Sbjct: 117 KGK---------GEQRVCKIFDAPNLPEGE 137


>gi|50955643|ref|YP_062931.1| DNA repair protein RadA [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50952125|gb|AAT89826.1| alkylation damage DNA repair protein [Leifsonia xyli subsp. xyli
           str. CTCB07]
          Length = 461

 Score = 43.3 bits (100), Expect = 0.065,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 3/137 (2%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +    SG    D  LG GG   G  + + G    GK+TL L   +++ +      +V 
Sbjct: 74  ESVRRRPSGIGEFDRVLG-GGIVPGAAILLSGEPGVGKSTLLLEVASRAAREQARVLYVS 132

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AE ++  +  R        +        E  L      + +    ++++DSV  ++  A 
Sbjct: 133 AEESVSQVCMRA--ERTGAMHDQLFLASETDLATIVGQIDAVRPSLVIVDSVQTVSSGAA 190

Query: 163 IEGDMGESLPGMQARLM 179
                G S     A  +
Sbjct: 191 EGIAGGPSQVREVASTL 207


>gi|323141518|ref|ZP_08076404.1| DNA repair protein RadA [Phascolarctobacterium sp. YIT 12067]
 gi|322413977|gb|EFY04810.1| DNA repair protein RadA [Phascolarctobacterium sp. YIT 12067]
          Length = 455

 Score = 43.3 bits (100), Expect = 0.065,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 46/115 (40%), Gaps = 1/115 (0%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E +++G    D  LG GG  +G +V + G    GK+T+ L    +  + G    +V  
Sbjct: 67  KVERLATGIREFDRVLG-GGVVQGSLVLLGGTPGIGKSTILLDAGLRFGQQGIKVLYVSG 125

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           E + +    R + +       +        L+       +    +++IDS+  + 
Sbjct: 126 EESEEQTAMRAVRLGGAQANDNLLILTATDLDAILAQANALKPQLLIIDSIQTMY 180


>gi|225377026|ref|ZP_03754247.1| hypothetical protein ROSEINA2194_02670 [Roseburia inulinivorans DSM
           16841]
 gi|225211123|gb|EEG93477.1| hypothetical protein ROSEINA2194_02670 [Roseburia inulinivorans DSM
           16841]
          Length = 633

 Score = 43.3 bits (100), Expect = 0.065,   Method: Composition-based stats.
 Identities = 54/280 (19%), Positives = 89/280 (31%), Gaps = 20/280 (7%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKLGVDLKN 121
            P G++  + G    GKTT AL   A     G             +       LG  +K 
Sbjct: 329 IPFGKVTIVQGNPGEGKTTFALRLAAACTTGGTLPGMKPLPPFQVIYQTAEDGLGDTVKP 388

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD----MGESLPGMQAR 177
            LI      ++ L I +        D  +  ++     R  I       MGE     +A 
Sbjct: 389 RLIEAAADLDRVLVIDEAKRELTLSDERIEKAITQNGARLIILDPIQAYMGEKTDMNRAN 448

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
            +    R+L     R+ C ++ I    +       S     G    +  +   L I R  
Sbjct: 449 EVRPMFRRLADVAERTGCAVILI--GHLNKAAGGQSAYRGLGSIDFRAAARSVLLIGR-- 504

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
            +K + ++      +   K+ +A   K V F +    G S+ GE      +      SGA
Sbjct: 505 -VKREPNV----RVIVHDKSSLAPEGKPVAFCLDPETGFSWIGEYDITADELL----SGA 555

Query: 298 WFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337
             +    +  Q        L +  E+A          AG+
Sbjct: 556 GGN-NATKTEQAERLILDLLADGKELASEDVVKAAAEAGI 594


>gi|78186788|ref|YP_374831.1| DNA repair protein RadA [Chlorobium luteolum DSM 273]
 gi|78166690|gb|ABB23788.1| DNA repair protein RadA [Chlorobium luteolum DSM 273]
          Length = 455

 Score = 43.3 bits (100), Expect = 0.065,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 5/121 (4%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
            +  E    + +G   LD  LG GG  +   + + G    GK+TL L   A+        
Sbjct: 61  AAAPEEYHRMKTGIGELDRVLG-GGLMQASAILVGGEPGIGKSTLMLQLAARLAPAKVLY 119

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
              +         A +L +  +NL ++     E  LE     +      ++++DS+  + 
Sbjct: 120 ISGEESPNQIRERATRLRLHAENLWLAPEVHLEAVLE----TIEKEQPALVIVDSIQTVY 175

Query: 159 P 159
            
Sbjct: 176 S 176


>gi|88807099|ref|ZP_01122611.1| DNA repair protein RadA [Synechococcus sp. WH 7805]
 gi|88788313|gb|EAR19468.1| DNA repair protein RadA [Synechococcus sp. WH 7805]
          Length = 464

 Score = 43.3 bits (100), Expect = 0.065,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 13/130 (10%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++  LG Q      ++ + SG   LD  LG GG   G +V + G    GK+TL L + + 
Sbjct: 63  SMAALGDQ-----PLQRLPSGYGELDRVLG-GGLVPGSLVLVGGDPGIGKSTLLLQSASA 116

Query: 91  SQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
                 +  +V AE +   +    ++L  D  +L +      +  LE  + L      D+
Sbjct: 117 IASH-RSVLYVSAEESAQQVKLRWQRLTSDSSDLQLLAETDLDLVLEELEAL----QPDV 171

Query: 149 IVIDSVAALT 158
            +IDS+ AL 
Sbjct: 172 AIIDSIQALH 181


>gi|296123525|ref|YP_003631303.1| RecA-superfamily implicated in signal transduction ATPase-like
           protein [Planctomyces limnophilus DSM 3776]
 gi|296015865|gb|ADG69104.1| RecA-superfamily implicated in signal transduction ATPase-like
           protein [Planctomyces limnophilus DSM 3776]
          Length = 302

 Score = 43.3 bits (100), Expect = 0.066,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 44/147 (29%), Gaps = 9/147 (6%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI-AQSQKTGGTCAFVD--AEH 105
           S+G   LD  LG GG   G +  I G    GKT L +    A   + G      D     
Sbjct: 6   STGIPELDQLLG-GGLIPGTLTVILGATGIGKTQLGIQFADAGIHQEGAPGCIADLTTRG 64

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALE--ITDMLVRSGAVDIIVIDSVAALTPRAEI 163
              +  A    +    L  +       + E  +    V     D     ++  +T R   
Sbjct: 65  DSQNHLAYAARMRDWQLKTTDSAEENGSSENLLYGEKVFENLEDRAQYLNLLEMTGR--- 121

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSI 190
                 +         ++   +L  +I
Sbjct: 122 RVTRESTTAEEWQDWKAEWNHRLERAI 148


>gi|23308964|ref|NP_601864.2| DNA repair protein RadA [Corynebacterium glutamicum ATCC 13032]
 gi|62391503|ref|YP_226905.1| DNA repair protein RadA [Corynebacterium glutamicum ATCC 13032]
 gi|145296662|ref|YP_001139483.1| DNA repair protein RadA [Corynebacterium glutamicum R]
 gi|21325437|dbj|BAC00059.1| Predicted ATP-dependent serine protease [Corynebacterium glutamicum
           ATCC 13032]
 gi|41326845|emb|CAF20689.1| PROBABLE ATP-DEPENDENT PROTEASE, DNA REPAIR (ATP-B [Corynebacterium
           glutamicum ATCC 13032]
 gi|140846582|dbj|BAF55581.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 464

 Score = 43.3 bits (100), Expect = 0.066,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 65/192 (33%), Gaps = 23/192 (11%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ---SQKTGG--TCAFV 101
            +S+G   LD  LG G  P G +V + G    GK+TL L   ++    ++  G  T  +V
Sbjct: 77  SISTGIGELDRVLGNGIVP-GSVVLMAGEPGVGKSTLLLEVASRWASMKEGDGTRTALYV 135

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
            AE +   +  R        +  +     E  L++    V      ++++DSV  +    
Sbjct: 136 TAEESAGQVRLRA--ERTAAVKDTLYLAAESNLDVVFGHVNQVKPSLLIVDSVQTMH--- 190

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
                 G                 LT+    S   ++ +  +     V         G  
Sbjct: 191 ----AAGVEGVAGGVAQSRAVTAALTTLAKTSGIPILLVGHVTKDGNV--------AGPR 238

Query: 222 ALKFYSSVRLDI 233
            L+    V L+ 
Sbjct: 239 VLEHLVDVVLNF 250


>gi|292659672|pdb|3K09|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant S431d
           Of The Kaic Circadian Clock Protein
 gi|292659673|pdb|3K09|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant S431d
           Of The Kaic Circadian Clock Protein
 gi|292659675|pdb|3K09|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant S431d
           Of The Kaic Circadian Clock Protein
          Length = 519

 Score = 43.3 bits (100), Expect = 0.067,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 73/219 (33%), Gaps = 33/219 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG + LD   G GGF K  I+   G   +GKT L    +  + 
Sbjct: 252 MRLTQRSSNV----RVSSGVVRLDEMCG-GGFFKDSIILATGATGTGKTLLVSRFVENAC 306

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
                      E +   +        +            ++ + P++   E  L+I    
Sbjct: 307 ANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSE 366

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +   +F 
Sbjct: 367 INDFKPARIAIDSLSALA-------------RGVSNNAFRQFVIGVTGYAKQEEITGLFT 413

Query: 201 N---QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           N   Q      +     +T T    L  Y  +R ++ R 
Sbjct: 414 NTSDQFMGAHSITDSHIDTITDTIILLQYVEIRGEMSRA 452


>gi|255641553|gb|ACU21050.1| unknown [Glycine max]
          Length = 102

 Score = 43.3 bits (100), Expect = 0.067,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
          +S+   GLD AL  GG P G + E+ GP   GKT   L
Sbjct: 46 LSTRLKGLDEAL-CGGIPFGVLTELVGPAGIGKTQFCL 82


>gi|332112620|gb|EGJ12413.1| DNA repair protein RadA [Rubrivivax benzoatilyticus JA2]
          Length = 450

 Score = 42.9 bits (99), Expect = 0.068,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 48/142 (33%), Gaps = 6/142 (4%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +    +G   LD  LG GG   G +  I G    GK+TL L  +               
Sbjct: 64  DVARTPTGQEELDRVLG-GGIVAGGVTLIGGDPGIGKSTLLLQALDALSAQMPVLYVTGE 122

Query: 104 EHALD-SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           E     ++ AR+LG+    + +    + E+ L   D           VIDS+  L     
Sbjct: 123 ESGAQVALRARRLGLSGAKVRVVAEISLEKILATLDA----EQPAFCVIDSIQTLYSDQL 178

Query: 163 IEGDMGESLPGMQARLMSQALR 184
                  +     A  +++  +
Sbjct: 179 TSAPGSVAQVRECAAQLTRVAK 200


>gi|153852780|ref|ZP_01994217.1| hypothetical protein DORLON_00199 [Dorea longicatena DSM 13814]
 gi|149754422|gb|EDM64353.1| hypothetical protein DORLON_00199 [Dorea longicatena DSM 13814]
          Length = 623

 Score = 42.9 bits (99), Expect = 0.068,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 75/232 (32%), Gaps = 15/232 (6%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKLGVDLKN 121
            P G++  I G    GKT  A+   A              E    +       LG  +K 
Sbjct: 326 IPFGKLTIIQGNPGEGKTYFAMRLAAACTNRKPLPGMETLEPFNIIYQTAEDGLGDTVKP 385

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM----GESLPGMQAR 177
            L+      E+ L I D        D  +  ++     R  I   M    G  +   +A 
Sbjct: 386 RLMEADADLERVLVIDDRDTPLTLADERIARAIRENNARLVIIDPMQAFLGADVDMNRAN 445

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
            +    R L      + C +V I  +    G          G  ++   ++VR  +  +G
Sbjct: 446 EVRPIFRSLGDIAQATGCAIVLIGHLNKAAGTQSTYR----GLGSIDITAAVRSLLF-IG 500

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
            +KD  +       +   K+ +A P + + F +   +G  + G       + 
Sbjct: 501 KLKDSPTT----RVLIHEKSSLAPPGQSLAFSLGDEKGFEWIGAYDITADEL 548


>gi|153809593|ref|ZP_01962261.1| hypothetical protein BACCAC_03911 [Bacteroides caccae ATCC 43185]
 gi|149127770|gb|EDM18994.1| hypothetical protein BACCAC_03911 [Bacteroides caccae ATCC 43185]
          Length = 453

 Score = 42.9 bits (99), Expect = 0.068,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 33/120 (27%), Gaps = 4/120 (3%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
                G+  + +G   LD     GG     ++ I    S GKT  ALH    +   G   
Sbjct: 171 AKSVNGVTGIPTGLTELDKK--TGGLQDNDLIIIAARPSVGKTAFALHLARHAALAGNAV 228

Query: 99  AFVDAE--HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
           A    E               ++            Q +          A   I +D  ++
Sbjct: 229 AVYSLEMQGERLGDRWLMAACNINPYRWRNGIPNPQEVAEARTTASGLAQLPIYVDDSSS 288


>gi|33865086|ref|NP_896645.1| circadian clock protein KaiC [Synechococcus sp. WH 8102]
 gi|54036129|sp|Q7U8R3|KAIC_SYNPX RecName: Full=Circadian clock protein kinase kaiC
 gi|33638770|emb|CAE07065.1| possible circadian clock protein KaiC [UI:98397326] [Synechococcus
           sp. WH 8102]
          Length = 512

 Score = 42.9 bits (99), Expect = 0.068,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 60/181 (33%), Gaps = 30/181 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG   LD   G GGF K  I+   G   +GKT L    I  + 
Sbjct: 248 MRLTQRSSNV----RVSSGVPRLDEMCG-GGFFKDSIILATGATGTGKTLLVSKFIEDAC 302

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
           +          E +   +        +            ++ + P++   E  L+I    
Sbjct: 303 RNKERAILFAYEESRAQLLRNGTSWGIDFEQMEQDGLLKIICAYPESTGLEDHLQIIKTD 362

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       + IDS++AL          G S          Q +  +T    + +    F 
Sbjct: 363 IGQFKPSRMAIDSLSALA--------RGVSH-----NAFRQFVIGVTGYAKQEEIAGFFT 409

Query: 201 N 201
           N
Sbjct: 410 N 410



 Score = 42.9 bits (99), Expect = 0.086,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 39 GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
          GS    ++ + +G  G D     GG P GR   I G   +GKT  +LH +  
Sbjct: 8  GSTQMQVQKLPTGIEGFDDVC-QGGLPIGRSTLISGTSGTGKTVFSLHFLHN 58


>gi|304382475|ref|ZP_07364972.1| DNA repair protein RadA [Prevotella marshii DSM 16973]
 gi|304336387|gb|EFM02626.1| DNA repair protein RadA [Prevotella marshii DSM 16973]
          Length = 471

 Score = 42.9 bits (99), Expect = 0.068,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 67/192 (34%), Gaps = 20/192 (10%)

Query: 2   DYRKEMNIVDKSK---------ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGS 52
           D  KEM +   SK         +L +ALSQ       G+   L  Q         +    
Sbjct: 39  DSFKEMRLASSSKESAARHTAQSLGSALSQ-------GSNRPLSLQEISARDEPRIDMND 91

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
             L+  LG GG   G IV + G    GK+TL L T+ +  +      +V  E +   +  
Sbjct: 92  AELNRVLG-GGLVPGSIVLLGGEPGIGKSTLTLQTVLRLPER--RILYVSGEESAHQLKM 148

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
           R   +               +LE     +R    +I+VIDS+  +  +         +  
Sbjct: 149 RAERIAPSGSSDCMVLCET-SLENIFSHIREIQPEIVVIDSIQTIATQQIDSSPGSIAQV 207

Query: 173 GMQARLMSQALR 184
              A  + +  +
Sbjct: 208 RECASALLRFAK 219


>gi|297569907|ref|YP_003691251.1| DNA repair protein RadA [Desulfurivibrio alkaliphilus AHT2]
 gi|296925822|gb|ADH86632.1| DNA repair protein RadA [Desulfurivibrio alkaliphilus AHT2]
          Length = 461

 Score = 42.9 bits (99), Expect = 0.068,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 63/221 (28%), Gaps = 12/221 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +    +S+G    D  LG GG   G +V + G    GK+T  L         GG    +
Sbjct: 64  LDEAPRISTGLAEFDRVLG-GGLVPGSVVLVGGDPGVGKSTGLLQVSC---AMGGRRRVL 119

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
                            L           E  +E            ++VIDS+  +   A
Sbjct: 120 YVSGEESPRQIAMRSRRLGLPKEGVMLQAETVVENILATAADLKPQVLVIDSIQTMQVGA 179

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
                   S     A L       LT    +S   +  +  +     +            
Sbjct: 180 LNSAPGSVSQVREAAAL-------LTRYAKQSGTAVFLVGHVTKSGDLAGPRVLEHIIDV 232

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
              F  ++    R + ++K++     N+  V  + ++    
Sbjct: 233 VCYFEGNLDSRYRMLRAVKNRYGAV-NELGVFAMTDRGLKE 272


>gi|268316103|ref|YP_003289822.1| putative circadian clock protein, KaiC [Rhodothermus marinus DSM
           4252]
 gi|262333637|gb|ACY47434.1| putative circadian clock protein, KaiC [Rhodothermus marinus DSM
           4252]
          Length = 301

 Score = 42.9 bits (99), Expect = 0.068,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 52/163 (31%), Gaps = 30/163 (18%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIAL-------------GIGGFPKGRIVEIYGPES 77
           AI+ L    +    +E V +G  GLD                 +GG P+  ++++ G   
Sbjct: 15  AIVSLRHAAAAAPPLEGVPTGVEGLDELFFTTEWREGRPVRKPLGGIPRYAVLQVTGVAD 74

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALD------SIYARKLGVDLKNL--------- 122
           +GK+ L         + G  C F+  E             A  +G D   +         
Sbjct: 75  TGKSLLVEQFAVAQARHGQVCLFLTTESPAPFVAMGLRTRAAAMGADWNAIEDRIVLVDA 134

Query: 123 --LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
                               +++  V  +VIDS+  L    E+
Sbjct: 135 ATHTILTQDLPTLFNTLAHAIKTYHVRAVVIDSITGLYEAREM 177


>gi|53804316|ref|YP_113843.1| DNA repair protein RadA [Methylococcus capsulatus str. Bath]
 gi|53758077|gb|AAU92368.1| DNA repair protein RadA [Methylococcus capsulatus str. Bath]
          Length = 447

 Score = 42.9 bits (99), Expect = 0.068,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 62/158 (39%), Gaps = 7/158 (4%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           +G+ M +       E +  V+SG   LD  LG GG   G  + + G    GK+TL L T+
Sbjct: 49  EGS-MPVSLAEVSREDLSRVTSGLGELDRVLG-GGVVPGSAILLGGDPGIGKSTLLLQTL 106

Query: 89  AQSQKTGGTCAFVDAEHALDSI-YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           A   K+  T      E        A +LG+D   +      + E+ L+  +        +
Sbjct: 107 AYLGKSARTLYVTGEESLSQVSLRAHRLGLDGHGIQALAETSLERILDTAE----RHKPE 162

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           ++V+DS+  +   A              +  + +  ++
Sbjct: 163 VLVVDSIQTVYSEALQSAPGSVGQVRECSAQLVRYAKQ 200


>gi|317017264|gb|ADU86034.1| disrupted meiotic cDNA 1 [Elymus caucasicus]
          Length = 138

 Score = 42.9 bits (99), Expect = 0.069,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 18/150 (12%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N++ ++  T E    +       +      ++++DSV AL          G      + 
Sbjct: 1   DNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAERQ 56

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR 234
           + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +R
Sbjct: 57  QKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHSATIRLMLR 116

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           +           G Q   K+         +
Sbjct: 117 KGK---------GEQRVCKIFDAPNLPEGE 137


>gi|320010089|gb|ADW04939.1| DNA repair protein RadA [Streptomyces flavogriseus ATCC 33331]
          Length = 470

 Score = 42.9 bits (99), Expect = 0.069,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 5/129 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G +V + G    GK+TL L   A++        +V AE +  
Sbjct: 75  STGVGELDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDDHRTLYVTAEESAS 133

Query: 109 SIYARKLGVD-LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
            +  R   +  + + L    +T    L      + +    ++V+DSV  +          
Sbjct: 134 QVRMRADRIRAINDHLYLAAETD---LSAVLGHLDAVKPSLLVLDSVQTVASPEIDGAPG 190

Query: 168 GESLPGMQA 176
           G +     A
Sbjct: 191 GMAQVREVA 199


>gi|149177488|ref|ZP_01856091.1| hypothetical protein PM8797T_15411 [Planctomyces maris DSM 8797]
 gi|148843638|gb|EDL57998.1| hypothetical protein PM8797T_15411 [Planctomyces maris DSM 8797]
          Length = 502

 Score = 42.9 bits (99), Expect = 0.069,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           ++V +G+  LD  L  GG   GR+  + G   +GKTTLAL  + +  K G T  +V
Sbjct: 8   QMVQTGNPALDTIL-EGGLTSGRVYLVEGDPGTGKTTLALQFLLEGAKNGETGLYV 62


>gi|325269812|ref|ZP_08136422.1| DNA repair protein RadA [Prevotella multiformis DSM 16608]
 gi|324987785|gb|EGC19758.1| DNA repair protein RadA [Prevotella multiformis DSM 16608]
          Length = 466

 Score = 42.9 bits (99), Expect = 0.070,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 50/150 (33%), Gaps = 12/150 (8%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
            L+  LG GG   G IV + G    GK+TL L TI    +         +          
Sbjct: 90  ELNRVLG-GGLVPGSIVLLGGEPGIGKSTLTLQTILHMTQR----VLYVSGEESPHQIKM 144

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
           +     K++  +     E +LE     +R    D++V+DS+  ++           +   
Sbjct: 145 RAERITKDIAENVIILSETSLEHIFEHIRDVQPDLVVVDSIQTISTEDVDSSPGSITQVR 204

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQM 203
             A         L      S   ++ I  +
Sbjct: 205 ECASA-------LLRFAKTSGVPVILIGHI 227


>gi|282866878|ref|ZP_06275912.1| DNA repair protein RadA [Streptomyces sp. ACTE]
 gi|282558277|gb|EFB63845.1| DNA repair protein RadA [Streptomyces sp. ACTE]
          Length = 470

 Score = 42.9 bits (99), Expect = 0.070,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 7/130 (5%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+    LD  LG GG   G +V + G    GK+TL L   A++        +V AE +  
Sbjct: 75  STRVPELDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASEDHRTLYVTAEESAS 133

Query: 109 SIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
            +  R  ++G    +L ++        L   D +  S    ++V+DSV  +         
Sbjct: 134 QVRLRADRIGAIDDHLFLAAETDLSAVLGHLDAVNPS----LLVLDSVQTVASPEIDGAP 189

Query: 167 MGESLPGMQA 176
            G +     A
Sbjct: 190 GGMAQVREVA 199


>gi|51893493|ref|YP_076184.1| hypothetical protein STH2355 [Symbiobacterium thermophilum IAM
           14863]
 gi|51857182|dbj|BAD41340.1| conserved domain protein [Symbiobacterium thermophilum IAM 14863]
          Length = 466

 Score = 42.9 bits (99), Expect = 0.070,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 3/80 (3%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+G  GLD  LG G FP      + G   +GKTTL +  + +  + G   A+   E  
Sbjct: 4   RLSTGVEGLDSVLGGGLFPASA-TLVRGAPGTGKTTLGIQFLCEGARRGEGGAYFTFEEF 62

Query: 107 LDSIYA--RKLGVDLKNLLI 124
            + IY   R+LG DL+ L  
Sbjct: 63  PEQIYRDARELGFDLQALEQ 82


>gi|330888799|gb|EGH21460.1| circadian oscillation regulator KaiC-like protein [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 515

 Score = 42.9 bits (99), Expect = 0.071,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E V SG   LD  L +GG  +G    + GP  SGKTT+ L  +A +   G  C   + + 
Sbjct: 265 EPVPSGVKELDDFL-VGGPLRGTSTLVTGPAGSGKTTVTLAYLAAACARGEKCTIYEFDE 323

Query: 106 ALDSIYARKLGVDLK 120
            + ++ +R   + ++
Sbjct: 324 RIATLISRADSMGME 338



 Score = 41.8 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           +  +     +VS+G+ G D  L  GG P  R+  + G   +GKTTL L  +    K G +
Sbjct: 14  EAKMTLPRPIVSTGNAGFDSIL-KGGLPNNRLYLLEGTPGAGKTTLGLQFLLDGVKAGES 72

Query: 98  CAFVDAEHALDS 109
             ++      + 
Sbjct: 73  VLYITLSETSEE 84


>gi|31087821|gb|AAN27945.1| disrupted meiotic cDNA 1 [Hordeum bogdanii]
          Length = 139

 Score = 42.9 bits (99), Expect = 0.071,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 51/152 (33%), Gaps = 18/152 (11%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
             ++ ++  T E    +       +      ++++DSV AL          G      + 
Sbjct: 1   DXIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAERQ 56

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR 234
           + ++Q   +LT         +   NQ+    G       P+   GG+ L   +++RL +R
Sbjct: 57  QKLAQMXSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           +           G Q   K+         + V
Sbjct: 117 KGK---------GEQRVCKIFDAPNLPEGEAV 139


>gi|328705511|ref|XP_001944618.2| PREDICTED: DNA repair protein RAD51 homolog 3-like [Acyrthosiphon
           pisum]
          Length = 332

 Score = 42.9 bits (99), Expect = 0.071,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 7/76 (9%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCA 99
           + +++    +D  L  GG   GRI E+ G   SGK+ L++      Q         G   
Sbjct: 73  DSIATFCKSIDELLN-GGIQVGRITELSGAPGSGKSQLSMQLCVSVQIPVCFEGLQGEAI 131

Query: 100 FVDAEHALDSIYARKL 115
           +VD       +   ++
Sbjct: 132 YVDTNSNFSELRLTEM 147


>gi|154490347|ref|ZP_02030608.1| hypothetical protein PARMER_00580 [Parabacteroides merdae ATCC
           43184]
 gi|154088958|gb|EDN88002.1| hypothetical protein PARMER_00580 [Parabacteroides merdae ATCC
           43184]
          Length = 455

 Score = 42.9 bits (99), Expect = 0.071,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 11/119 (9%)

Query: 1   MDYRKEMNI--VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIA 58
           MD  +E     VD   A E A   + R +      +        E I+ V +G   LD  
Sbjct: 144 MDGLREHASGGVDVRMAAEVAREVLARSF------RNQEAREKGEHIQ-VRTGFDELDDL 196

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117
              GG  +G +  + G  S GKT +ALH   Q+ + G    +   E + + +  R L +
Sbjct: 197 --TGGLYRGELAVLSGRPSMGKTAVALHMALQAARAGRNTLYFSIEMSEEEVTERILSM 253


>gi|145627723|ref|ZP_01783524.1| hypothetical protein CGSHi22121_01760 [Haemophilus influenzae
           22.1-21]
 gi|144979498|gb|EDJ89157.1| hypothetical protein CGSHi22121_01760 [Haemophilus influenzae
           22.1-21]
          Length = 161

 Score = 42.9 bits (99), Expect = 0.071,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +     SSG   LD  LG GG   G  + I G   +GK+TL L  +        T  +V
Sbjct: 69  LQETPRFSSGFNELDRVLG-GGIVPGSAILIGGHPGAGKSTLLLQVMCGLA-KNMTALYV 126

Query: 102 DAEHALDSIYARK 114
             E +L  +  R 
Sbjct: 127 TGEESLQQVAMRA 139


>gi|5929968|gb|AAD56662.1|AF180944_3 RadA [Haemophilus influenzae]
          Length = 147

 Score = 42.9 bits (99), Expect = 0.071,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +     SSG   LD  LG GG   G  + I G   +GK+TL L  +        T  +V
Sbjct: 69  LQETPRFSSGFNELDRVLG-GGIVPGSAILIGGHPGAGKSTLLLQVMCGLA-KNMTALYV 126

Query: 102 DAEHALDSIYARK 114
             E +L  +  R 
Sbjct: 127 TGEESLQQVAMRA 139


>gi|16332222|ref|NP_442950.1| circadian clock protein KaiC [Synechocystis sp. PCC 6803]
 gi|54036101|sp|P74646|KAIC_SYNY3 RecName: Full=Circadian clock protein kinase kaiC
 gi|1653852|dbj|BAA18762.1| slr0758 [Synechocystis sp. PCC 6803]
          Length = 519

 Score = 42.9 bits (99), Expect = 0.072,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 71/219 (32%), Gaps = 33/219 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       +SSG   LD   G GGF K  I+   G   +GKT L    + +  
Sbjct: 253 MRLTQRSSNA----RISSGVQTLDEMCG-GGFFKDSIILATGATGTGKTLLVSKFLQEGC 307

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
           +          E +   +        +            LL + P++   E  L++    
Sbjct: 308 RQRERAILFAYEESRAQLSRNASSWGIDFEEMEHKGLLKLLCTYPESAGLEDHLQMIKSE 367

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 368 ISEFKPSRIAIDSLSALA-------------RGVTNNAFRQFVIGVTGYAKQEEITGFFT 414

Query: 201 N---QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           N   Q      +      T T    +  Y  +R ++ R 
Sbjct: 415 NTTDQFMGAHSITESHISTITDTILMLQYVEIRGEMSRA 453



 Score = 41.0 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 6/87 (6%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT----IAQSQKTGGT 97
            +G++ + +   G D  +  GG P GR   + G   +GKT LA+      I      G  
Sbjct: 16  RKGVQKIRTVIEGFDE-ITHGGLPIGRTTLVSGTSGTGKTLLAVQFLYQGIHHFDYPGLF 74

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLI 124
             F ++   +    A   G DL+ L+ 
Sbjct: 75  ITFEESPSDII-ENAYSFGWDLQQLID 100


>gi|269792269|ref|YP_003317173.1| replicative DNA helicase [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269099904|gb|ACZ18891.1| replicative DNA helicase [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 447

 Score = 42.9 bits (99), Expect = 0.073,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 19/108 (17%)

Query: 22  QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81
           QI+  +  G+I            +  V +G    D     GG   G +  +    S GKT
Sbjct: 172 QIEERFASGSI------------VTGVPTGFDDFDRL--TGGLQPGSLNILAARPSMGKT 217

Query: 82  TLALHTIAQSQKTGGTCAF-----VDAEHALDSIYARKLGVDLKNLLI 124
             AL+    +   G T        + AE     +   + GV++ +L  
Sbjct: 218 AFALNIAQNAAVRGRTPVLIFSLEMGAEQLAQRLLGAEAGVNIHDLRT 265


>gi|198435568|ref|XP_002121089.1| PREDICTED: similar to PAX neighbour protein [Ciona intestinalis]
          Length = 365

 Score = 42.9 bits (99), Expect = 0.073,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 24 QRVYGKGA--IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           +  GKGA  ++  G+  S+  G+ +VS+G   LD+ LG GG P G I+ +
Sbjct: 7  TKKSGKGASGVVIPGTHPSLHNGLLLVSTGIPSLDVVLG-GGLPVGSIMMV 56


>gi|47214653|emb|CAG00889.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 332

 Score = 42.9 bits (99), Expect = 0.073,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 8/120 (6%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL-HTIAQSQKTGGT 97
             +     ++SSG+  LD  L   GF  G I E+ G   SGK+ +     +  S     +
Sbjct: 73  EELLSSTAILSSGNPSLDKLL-DSGFYTGEITELSGGPGSGKSQVCFAAAVHISLHLKQS 131

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
             FVD    L        G  L+ L        EQ   +  + V        ++D + AL
Sbjct: 132 VVFVDTTGGLT------AGRLLQMLEAESSKRDEQMEALQRIHVFRLFDVFSLLDCLYAL 185


>gi|307321979|ref|ZP_07601359.1| Non-specific serine/threonine protein kinase [Sinorhizobium
           meliloti AK83]
 gi|306892357|gb|EFN23163.1| Non-specific serine/threonine protein kinase [Sinorhizobium
           meliloti AK83]
          Length = 479

 Score = 42.9 bits (99), Expect = 0.074,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 1/75 (1%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +   VVSSG  GLD  L  GG P   +  + G   SGKTT AL  +      G  C +V
Sbjct: 4   RKKQTVVSSGISGLDEIL-RGGLPASNLYIVQGAPGSGKTTAALQFLRAGVALGEPCIYV 62

Query: 102 DAEHALDSIYARKLG 116
                   + A  L 
Sbjct: 63  SLSQTRAELEAIALS 77


>gi|239816180|ref|YP_002945090.1| hypothetical protein Vapar_3206 [Variovorax paradoxus S110]
 gi|239802757|gb|ACS19824.1| hypothetical protein Vapar_3206 [Variovorax paradoxus S110]
          Length = 268

 Score = 42.9 bits (99), Expect = 0.074,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 2/98 (2%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEI--YGPESSGKTTLALHTIAQSQKTGGTCAFV 101
             +VV++G   LD  L  GG+P G + E+    PE+     L        Q  GG    V
Sbjct: 27  DAQVVATGHAALDAQLPGGGWPVGAMTELLQTAPEAHVWRLLLPALAQAVQAHGGPVVLV 86

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
            A +   +      G+ ++ L+  + D     L   + 
Sbjct: 87  GAPYEPCAAALAAQGLPVEALMWVRSDAPAARLWACEQ 124


>gi|149919416|ref|ZP_01907897.1| predicted repair protein [Plesiocystis pacifica SIR-1]
 gi|149819722|gb|EDM79147.1| predicted repair protein [Plesiocystis pacifica SIR-1]
          Length = 473

 Score = 42.9 bits (99), Expect = 0.074,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           +GA++ + +        + +S+G   LD  LG GG   G +V + G    GK+TL L   
Sbjct: 60  EGAVVPVTAAQEQLADAQRLSTGIAELDRVLG-GGLVPGSLVLLGGAPGIGKSTLILQAC 118

Query: 89  A 89
           A
Sbjct: 119 A 119


>gi|194333995|ref|YP_002015855.1| DNA repair protein RadA [Prosthecochloris aestuarii DSM 271]
 gi|194311813|gb|ACF46208.1| DNA repair protein RadA [Prosthecochloris aestuarii DSM 271]
          Length = 457

 Score = 42.9 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 44/121 (36%), Gaps = 5/121 (4%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
               E    + +G   LD  LG GG      V   G    GK+TL L     +       
Sbjct: 63  DEPPETSRRLPTGMNELDRVLG-GGLMNASAVLCGGEPGIGKSTLMLQIAPSATPAKILY 121

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
              +   +     AR+LG+  +NL +    T    LE     + +    I++IDS+  + 
Sbjct: 122 ICGEESPSQVRDRARRLGIHTENLWLLAEVT----LERILASIDNEKPAIVIIDSIQTIF 177

Query: 159 P 159
            
Sbjct: 178 S 178


>gi|31087801|gb|AAN27935.1| disrupted meiotic cDNA 1 [Hordeum cf. pusillum GP-2003]
          Length = 138

 Score = 42.9 bits (99), Expect = 0.076,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 51/150 (34%), Gaps = 18/150 (12%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N++ ++  T E    +       +      ++++DSV AL          G      + 
Sbjct: 1   DNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAERQ 56

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR 234
           + ++Q   +LT         +   NQ+    G       P+   GG+ L   +++RL +R
Sbjct: 57  QKLAQMXSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           +           G Q   K+         +
Sbjct: 117 KGK---------GEQRVCKIFDAPNLPEGE 137


>gi|186683166|ref|YP_001866362.1| circadian clock protein KaiC [Nostoc punctiforme PCC 73102]
 gi|186465618|gb|ACC81419.1| putative circadian clock protein, KaiC [Nostoc punctiforme PCC
           73102]
          Length = 520

 Score = 42.9 bits (99), Expect = 0.076,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 59/183 (32%), Gaps = 30/183 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG   LD   G GGF K  I+   G   +GKT L    I    
Sbjct: 252 MRLTQRSSNI----RVSSGVKILDEMCG-GGFFKDSIILATGATGTGKTLLVSKFIQDGC 306

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
             G        E +   +        +            ++ + P++   E  L+I    
Sbjct: 307 LNGEQAILFAYEESRAQLSRNASSWGIDFEELEEQGLLKIICTYPESTGLEDHLQIIKSE 366

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 367 IAVFKPARIAIDSLSALA-------------RGVSNNAFRQFVIGVTGYAKQEEITGFFT 413

Query: 201 NQM 203
           N  
Sbjct: 414 NTT 416



 Score = 39.4 bits (90), Expect = 0.78,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 48/149 (32%), Gaps = 22/149 (14%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KT 94
           +     G+E + +   G D  +  GG P GR   + G   +GKT L+L  +         
Sbjct: 11  KAPKNGGVEKIRTMIEGFDD-ISHGGLPIGRTTLVSGTSGTGKTLLSLQFLYNGITYFDE 69

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLIS------QPDTGEQALEI------------ 136
            G     +   +     A   G +L  L+              +  +I            
Sbjct: 70  AGVFVTFEESPSDIIKNAHVFGWNLPRLIEEGKLFILDASPDPEGQDIVGNFDLSALIER 129

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
               +R      + IDS+ A+  + E  G
Sbjct: 130 LQYAIRKYKAKRVSIDSMTAVFQQYEAMG 158


>gi|296242921|ref|YP_003650408.1| putative circadian clock protein KaiC [Thermosphaera aggregans DSM
           11486]
 gi|296095505|gb|ADG91456.1| putative circadian clock protein, KaiC [Thermosphaera aggregans DSM
           11486]
          Length = 249

 Score = 42.9 bits (99), Expect = 0.077,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI--AQSQKTGGTCAFVD 102
           +E V +G  G D  L  GG PK  +V + G   +GK+      +        GG    ++
Sbjct: 2   VERVKTGIPGFDEILN-GGIPKRNVVLLSGGPGTGKSIFGTQFLWNGLQLGEGGVYVALE 60

Query: 103 AEHALDSIYARKLGVDLKNL 122
                  +  R+ G D++  
Sbjct: 61  EHPVQVRVNMRQFGWDVRQF 80


>gi|307309039|ref|ZP_07588719.1| Non-specific serine/threonine protein kinase [Sinorhizobium
           meliloti BL225C]
 gi|306900512|gb|EFN31126.1| Non-specific serine/threonine protein kinase [Sinorhizobium
           meliloti BL225C]
          Length = 479

 Score = 42.9 bits (99), Expect = 0.077,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 1/75 (1%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +   VVSSG  GLD  L  GG P   +  + G   SGKTT AL  +      G  C +V
Sbjct: 4   RKKQTVVSSGISGLDEIL-RGGLPASNLYIVQGAPGSGKTTAALQFLRAGVALGEPCIYV 62

Query: 102 DAEHALDSIYARKLG 116
                   + A  L 
Sbjct: 63  SLSQTRAELEAIALS 77


>gi|163745040|ref|ZP_02152400.1| hypothetical protein OIHEL45_05615 [Oceanibulbus indolifex HEL-45]
 gi|161381858|gb|EDQ06267.1| hypothetical protein OIHEL45_05615 [Oceanibulbus indolifex HEL-45]
          Length = 484

 Score = 42.9 bits (99), Expect = 0.078,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF--V 101
             E V++G   LD  LG G FP G    + GP   GKTT A+  +  + + G   A+   
Sbjct: 227 STEPVTTGLKELDALLGDGLFP-GTNALLAGPAGVGKTTTAVRCMIAALERGQKAAYFLF 285

Query: 102 DAEHALDSIYARKLGVDLKNLLI 124
           D   A   I ++ LG+DL+  + 
Sbjct: 286 DERLATLMIRSKALGMDLQPYID 308


>gi|158338751|ref|YP_001519928.1| DNA repair protein RadA [Acaryochloris marina MBIC11017]
 gi|158308992|gb|ABW30609.1| DNA repair protein RadA [Acaryochloris marina MBIC11017]
          Length = 490

 Score = 42.9 bits (99), Expect = 0.079,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 82/238 (34%), Gaps = 27/238 (11%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + I+  SSG   LD  LG GG   G +V + G    GK+TL L  +        T  +V 
Sbjct: 76  QPIQRFSSGYSELDRVLG-GGIVPGSLVLVGGDPGIGKSTLLLQIV-NFLSARQTVLYVC 133

Query: 103 AEHALDSIYARKLGVDLKNL-----LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           AE +   +  R   + +  L     +   P   +      D+ +       +V+  + +L
Sbjct: 134 AEESGQQVKLRAQRLGIGTLNLNKEITDPPPKSKDKSANADLYLLPETDLEMVLQELDSL 193

Query: 158 TPRAEIEGDMGE---SLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMKIGVMFG 212
            P+  I   +     S        ++Q          +++   I +FI     K G +  
Sbjct: 194 QPQVAIIDSIQALFFSTLTSAPGSVAQVRECTSALMRLAKRNHITLFIVGHVTKEGAI-- 251

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
                 G   L+      L          +     N   ++ VKN+  +  +   F++
Sbjct: 252 -----AGPKVLEHLVDTVLYF--------EGDRFANHRLLRSVKNRFGATHEVGVFEM 296


>gi|121998521|ref|YP_001003308.1| hypothetical protein Hhal_1742 [Halorhodospira halophila SL1]
 gi|121589926|gb|ABM62506.1| SOS cell division inhibitor SulA [Halorhodospira halophila SL1]
          Length = 278

 Score = 42.9 bits (99), Expect = 0.079,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 1/102 (0%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIY-GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           +G   LD AL  GG+P G + EI+    + G+  L L ++A   +     A V   +   
Sbjct: 32  TGYPELDAALPDGGWPLGTVTEIFHQQPAIGELQLILPSLAALSRRRQWLALVAPPYIPY 91

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +      GVDL  +L+  P   E  L   +  +RSG    +V
Sbjct: 92  APGLAHAGVDLSRVLLIHPRAHEDHLWAIEQALRSGTCGAVV 133


>gi|298368762|ref|ZP_06980080.1| DNA repair protein RadA [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282765|gb|EFI24252.1| DNA repair protein RadA [Neisseria sp. oral taxon 014 str. F0314]
          Length = 459

 Score = 42.9 bits (99), Expect = 0.079,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 55/146 (37%), Gaps = 4/146 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
               +    +G   LD  LG  G   G ++ + G    GK+TL L TIA+  ++     +
Sbjct: 65  TATEVPRNPTGMGELDRVLGD-GLVDGAVILLGGDPGIGKSTLLLQTIAKMAQS-RKVLY 122

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E +   +  R     L+          E  +E     ++    +++VIDS+  +   
Sbjct: 123 VSGEESAQQVALRAQ--RLELPTEGVNLLAEIRMEAIQAALKQHQPEVVVIDSIQTMYSD 180

Query: 161 AEIEGDMGESLPGMQARLMSQALRKL 186
                    S     A  +++  +++
Sbjct: 181 QITSAPGSVSQVRECAAQLTRMAKQM 206


>gi|305663419|ref|YP_003859707.1| putative circadian clock protein, KaiC [Ignisphaera aggregans DSM
           17230]
 gi|304377988|gb|ADM27827.1| putative circadian clock protein, KaiC [Ignisphaera aggregans DSM
           17230]
          Length = 263

 Score = 42.9 bits (99), Expect = 0.080,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 3/79 (3%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE- 104
           E V +G  G D  L  GG PK  IV I G   +GKT ++   +    + G    +V  E 
Sbjct: 3   ERVKTGIPGFDEIL-YGGIPKRNIVLISGGPGTGKTIMSQQFLWNGLQIGEPGIYVALEE 61

Query: 105 -HALDSIYARKLGVDLKNL 122
             A      R+ G D+   
Sbjct: 62  HPAQIKANMRQFGWDVTQY 80


>gi|33240872|ref|NP_875814.1| circadian clock protein KaiC [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|54036137|sp|Q7VAN5|KAIC_PROMA RecName: Full=Circadian clock protein kinase kaiC
 gi|33238401|gb|AAQ00467.1| RecA-superfamily ATPase [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
          Length = 501

 Score = 42.9 bits (99), Expect = 0.080,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 60/185 (32%), Gaps = 30/185 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       +SSG   LD   G GG+ +  I+   G   +GKT L    I  + 
Sbjct: 237 MRLTQRSSNI----RISSGVPDLDDMCG-GGYFQDSIILATGATGTGKTMLVSKFIEDAY 291

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
           +          E +   +        +            ++ + P++   E  L+I    
Sbjct: 292 RNQERAIIFAYEESRAQLLRNATSWGIDFEQMEADGLLKIICAYPESTGLEDHLQIIKTE 351

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       + IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 352 ITEFKPSRMAIDSLSALA-------------RGVSLNAFRQFVIGVTGYAKQEEIAGFFT 398

Query: 201 NQMRM 205
           N    
Sbjct: 399 NTAEE 403



 Score = 39.4 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL----HTIAQSQKTGGTCA 99
            ++ + +G  G D     GG P  R   + G   +GKT  +L    H I    + G    
Sbjct: 2   QVQKLPTGIEGFDDVC-QGGLPTARSTLVSGTSGTGKTVFSLQYLHHGICHFDEPGVFVT 60

Query: 100 FVDAEHALDSIYARKLGVDLKNLL 123
           F ++   +        G DL+ L+
Sbjct: 61  FEESPLDIIRNAG-SFGWDLQELI 83


>gi|327401459|ref|YP_004342298.1| putative circadian clock protein KaiC [Archaeoglobus veneficus
           SNP6]
 gi|327316967|gb|AEA47583.1| putative circadian clock protein, KaiC [Archaeoglobus veneficus
           SNP6]
          Length = 230

 Score = 42.9 bits (99), Expect = 0.081,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G  GLD  L  GG   GR   + G   SGKT L++  + +  K G  C +V  E  ++
Sbjct: 4   STGVEGLDEMLN-GGLIPGRTYLVKGGPGSGKTILSMLFLVEGAKRGENCIYVTLEEPIN 62

Query: 109 SIYARKLGVDLK 120
            +      V + 
Sbjct: 63  EVKEDMKNVGVD 74


>gi|295700323|ref|YP_003608216.1| non-specific serine/threonine protein kinase [Burkholderia sp.
           CCGE1002]
 gi|295439536|gb|ADG18705.1| Non-specific serine/threonine protein kinase [Burkholderia sp.
           CCGE1002]
          Length = 511

 Score = 42.9 bits (99), Expect = 0.081,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 11/90 (12%)

Query: 22  QIQRVY----GKGAIM--QL----GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           Q+ + +    G G +M  +L      Q    +    +  G   LD  LG GGF +G    
Sbjct: 232 QMGKHFFRIAGSGLLMFPRLEAHCAQQPGPVDLKARLGFGLPHLDNLLG-GGFAQGSTTT 290

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           + GP   GKT L L  +A        C ++
Sbjct: 291 LIGPSGVGKTLLCLQFLAAGLARSERCVYL 320


>gi|242011383|ref|XP_002426430.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212510535|gb|EEB13692.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 317

 Score = 42.9 bits (99), Expect = 0.081,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 65/202 (32%), Gaps = 26/202 (12%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCAFVDAEHALDSIYA 112
           L  GG   G+I E+ GP  SGKT + L          +   + G   F+  +    +   
Sbjct: 89  LLNGGLSIGQITELCGPPGSGKTQMCLQFCVDVRIPKELGGSEGEAIFISTDFGFHAERL 148

Query: 113 RKLGVDLKNLL--ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
           R++     +    +   D      ++   L     ++ + I  +  LT   ++  ++GE 
Sbjct: 149 RQISQAAVDHFNKMISTDNFSSENDLEKKLTLEKVLEGVKILEIHELTNLQKVIENLGEY 208

Query: 171 LPGMQARLMSQ------------------ALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
               +    S                    L+ L    ++ K  +V  NQ+   +     
Sbjct: 209 FQRKENNSFSTPLIVDIEEPGIRGKIALSILQTLNYLSNKYKFAVVLTNQLTTVLEKKGR 268

Query: 213 SPETTTGGNALKFYSSVRLDIR 234
           S      G         R+ ++
Sbjct: 269 SVVKPALGQVHAHCIHKRVILK 290


>gi|94264367|ref|ZP_01288158.1| DNA repair protein RadA [delta proteobacterium MLMS-1]
 gi|93455196|gb|EAT05412.1| DNA repair protein RadA [delta proteobacterium MLMS-1]
          Length = 455

 Score = 42.9 bits (99), Expect = 0.082,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 83/242 (34%), Gaps = 23/242 (9%)

Query: 30  GAIM---QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           G++M   ++G+     E    +++G   LD  LG GG   G +V + G    GK+T AL 
Sbjct: 53  GSVMPVQKIGAVELAEEP--RIATGLGELDRVLG-GGLVPGSVVLVGGDPGVGKST-ALL 108

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD---TGEQALEITDMLVRS 143
            +           +V  E +      R++ +    L +++P      E  +E        
Sbjct: 109 QVGSKLGADRKVLYVSGEES-----PRQIAMSCHRLGLAEPGMLLLAETVIENILATAAE 163

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
               ++VIDS+  +   A      G +     A        +LT     +   +  +  +
Sbjct: 164 VKPQVLVIDSIQTMQVGALNSAPGGVTQVREAAA-------RLTRFAKETGTAVFLVGHV 216

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
                +               F  +V    R + ++K++     N+  V  + ++     
Sbjct: 217 TKSGNLAGPRVLEHMIDVVCYFEGNVDSRYRLLRAVKNRFGAV-NELGVFAMTDRGLKEV 275

Query: 264 KQ 265
             
Sbjct: 276 SN 277


>gi|307692297|ref|ZP_07634534.1| DNA repair protein RadA [Ruminococcaceae bacterium D16]
          Length = 456

 Score = 42.9 bits (99), Expect = 0.083,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 10/115 (8%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
              +G   LD  LG GG  KG +V + G    GK+TL L         G  C F +  + 
Sbjct: 73  RFPTGMGELDRVLG-GGAVKGSLVLVGGAPGIGKSTLMLQIC------GSLCRFANVLYV 125

Query: 107 LDSIYARKLGVDLKNLLISQPDTG---EQALEITDMLVRSGAVDIIVIDSVAALT 158
                 R++ +  + L +         E +L+     V     DI+++DS+  L 
Sbjct: 126 SGEESERQIKLRAERLKVGGEGLYLLSETSLDNLVDAVHELKPDILIVDSIQTLY 180


>gi|330981866|gb|EGH79969.1| DNA repair protein RadA [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 162

 Score = 42.9 bits (99), Expect = 0.083,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 4/98 (4%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E I   S+ S  LD  LG GG   G +V I G    GK+T+ L T+    +      +V
Sbjct: 67  VEEIPRFSTNSTELDRVLG-GGLVDGSVVLIGGDPGIGKSTILLQTLCNIAQR-MPALYV 124

Query: 102 DAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEIT 137
             E +   +   AR+LG+    L +      E  +   
Sbjct: 125 TGEESQQQVAMRARRLGLPQDKLRVMTETCIETIIATA 162


>gi|331699821|ref|YP_004336060.1| DNA repair protein RadA [Pseudonocardia dioxanivorans CB1190]
 gi|326954510|gb|AEA28207.1| DNA repair protein RadA [Pseudonocardia dioxanivorans CB1190]
          Length = 434

 Score = 42.9 bits (99), Expect = 0.083,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 4/126 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +G   LD  LG GG   G +V + G    GK+TL L   A++   G        E A  
Sbjct: 50  PTGVDELDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLEVAAKAAHRGRVLYVTGEESAGQ 108

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
                +    L + L    ++    L      + + A  ++++DS+  ++      G  G
Sbjct: 109 VRLRAERTGGLHDDLYLAAESD---LGAIVGHLDALAPGLLIVDSIQTMSTSDVDGGVGG 165

Query: 169 ESLPGM 174
            +    
Sbjct: 166 VTQVRA 171


>gi|283455409|ref|YP_003359973.1| radA DNA repair protein [Bifidobacterium dentium Bd1]
 gi|283102043|gb|ADB09149.1| radA DNA repair protein [Bifidobacterium dentium Bd1]
          Length = 469

 Score = 42.9 bits (99), Expect = 0.084,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 50/150 (33%), Gaps = 9/150 (6%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTGG 96
           E +  + +G    D  LG G  P G +  I G    GK+TL L T         + +   
Sbjct: 75  ENMSRIPTGFSEFDRVLGSGIVP-GSVTLIAGEPGIGKSTLLLETAGNVAREVANHRDRN 133

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
              +V  E +   +  R   ++     +    T +  L     L+      + ++DS   
Sbjct: 134 VVLYVSGEESQAQVRMRASRINAIEPNMLLAATTD--LATVLGLIEQVRPALAIVDSAQT 191

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           +  +       G +     A  +    + L
Sbjct: 192 IVSQDVDGISGGSTQVREVASALIDTAKTL 221


>gi|171741228|ref|ZP_02917035.1| hypothetical protein BIFDEN_00302 [Bifidobacterium dentium ATCC
           27678]
 gi|171276842|gb|EDT44503.1| hypothetical protein BIFDEN_00302 [Bifidobacterium dentium ATCC
           27678]
          Length = 469

 Score = 42.9 bits (99), Expect = 0.084,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 50/150 (33%), Gaps = 9/150 (6%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTGG 96
           E +  + +G    D  LG G  P G +  I G    GK+TL L T         + +   
Sbjct: 75  ENMSRIPTGFSEFDRVLGSGIVP-GSVTLIAGEPGIGKSTLLLETAGNVAREVANHRDRN 133

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
              +V  E +   +  R   ++     +    T +  L     L+      + ++DS   
Sbjct: 134 VVLYVSGEESQAQVRMRASRINAIEPNMLLAATTD--LATVLGLIEQVRPALAIVDSAQT 191

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           +  +       G +     A  +    + L
Sbjct: 192 IVSQDVDGISGGSTQVREVASALIDTAKTL 221


>gi|288928275|ref|ZP_06422122.1| DNA repair protein RadA [Prevotella sp. oral taxon 317 str. F0108]
 gi|288331109|gb|EFC69693.1| DNA repair protein RadA [Prevotella sp. oral taxon 317 str. F0108]
          Length = 462

 Score = 42.9 bits (99), Expect = 0.085,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 62/150 (41%), Gaps = 11/150 (7%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
            L+  LG GG  +G IV + G    GK+TL L TI +  +      +V  E +   +  R
Sbjct: 84  ELNRVLG-GGLVRGSIVLLGGEPGIGKSTLVLQTILRMPEK--RILYVSGEESTHQLKMR 140

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
              ++ +N+  +     E ALE   M V     D++++DS+  +   +E       S+  
Sbjct: 141 ADRIE-ENVADNVIVLSENALEKILMQVDDVKPDLLIVDSIQTI--ESETIDSSPGSIVQ 197

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQM 203
           ++    +     L      S   ++ I  +
Sbjct: 198 VRECASA-----LLRYAKTSSVPVLLIGHI 222


>gi|327400673|ref|YP_004341512.1| putative circadian clock protein KaiC [Archaeoglobus veneficus
           SNP6]
 gi|327316181|gb|AEA46797.1| putative circadian clock protein, KaiC [Archaeoglobus veneficus
           SNP6]
          Length = 209

 Score = 42.9 bits (99), Expect = 0.085,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + VS+G  G D   G GG P+G    + G   SGKT  ++  +    +  G         
Sbjct: 3   KRVSTGIPGFDELCG-GGLPQGGTYLVVGAAESGKTVFSMQYLVNGARMFGEAGIFITTE 61

Query: 106 ALDSIYARKLG 116
                   +  
Sbjct: 62  ESPRHIRDRFS 72


>gi|198274990|ref|ZP_03207522.1| hypothetical protein BACPLE_01149 [Bacteroides plebeius DSM 17135]
 gi|198272437|gb|EDY96706.1| hypothetical protein BACPLE_01149 [Bacteroides plebeius DSM 17135]
          Length = 440

 Score = 42.9 bits (99), Expect = 0.085,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 4/119 (3%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
                G+  + +G   LD     GG+  G ++   G    GKT L L     + + G   
Sbjct: 186 SRSVNGVTGIPTGIPELDRM--TGGWQPGNLIFTAGRPRLGKTQLGLKFAMHAAEKGYRV 243

Query: 99  AFVDAEHALDSIYARKLGVDLKNLL--ISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
                E   + +  R L + + +L   +       Q +E    + +      +++D   
Sbjct: 244 LLYTLEMMTEEVGERVLMMRVPDLYKKVKSGYVTSQEVENLVDVAKGMEDCRLMVDDTP 302


>gi|222480669|ref|YP_002566906.1| KaiA binding [Halorubrum lacusprofundi ATCC 49239]
 gi|222453571|gb|ACM57836.1| KaiA binding [Halorubrum lacusprofundi ATCC 49239]
          Length = 231

 Score = 42.9 bits (99), Expect = 0.085,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
           SSG  G D AL  GGFP+ R+  + GP  SGKTT      AQ  + G    +V  
Sbjct: 4   SSGVPGFD-ALVDGGFPENRLYVVSGPPGSGKTTFCSQFAAQGARNGEDVLYVSM 57


>gi|332180174|gb|AEE15862.1| DNA repair protein RadA [Treponema brennaborense DSM 12168]
          Length = 462

 Score = 42.9 bits (99), Expect = 0.086,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 5/117 (4%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG--GTCAFVDA 103
             +S+G    D  LG GG  K   + + G    GK+TL L T A+  ++G  G   +V  
Sbjct: 73  SRISTGIAEFDCVLG-GGAMKRSAILVGGEPGIGKSTLLLQTAAKIAESGAAGKIVYVSG 131

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTG--EQALEITDMLVRSGAVDIIVIDSVAALT 158
           E +   I +R   + L   + +          LE  +  +       +V+DS+  + 
Sbjct: 132 EESASQIRSRADRLGLTQTVEAGNINLLCTTRLEDIEDALNDLNPGFVVVDSIQTVY 188


>gi|320535946|ref|ZP_08036011.1| DNA repair protein RadA [Treponema phagedenis F0421]
 gi|320147197|gb|EFW38748.1| DNA repair protein RadA [Treponema phagedenis F0421]
          Length = 463

 Score = 42.9 bits (99), Expect = 0.086,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 6/117 (5%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           +  + +S+G   LD  LG G   +  ++ I G    GK+TL L     +   G    +V 
Sbjct: 70  QDTDRLSTGISELDRVLGGGAVKRSAVM-IGGEPGIGKSTLLLQ---AAAAAGKKVLYVS 125

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
            E +      R     L   L +         E  +  + +     ++IDS+  +  
Sbjct: 126 GEES--PGQIRGRADRLHLPLNNIELLCTARAEDIEAALNAQNPVFVIIDSIQTIFS 180


>gi|148683730|gb|EDL15677.1| RAD51-like 3 (S. cerevisiae), isoform CRA_d [Mus musculus]
          Length = 353

 Score = 42.9 bits (99), Expect = 0.087,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 68/209 (32%), Gaps = 26/209 (12%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGT 97
             +     ++S+G   LD  L   G   G + EI G   SGKT + L   A         
Sbjct: 102 EELKTSTAILSTGIGSLDKLL-DAGLYTGEVTEIVGGPGSGKTQVCLCVAANVAHSLQQN 160

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
             +VD+   +           L+ L     D  +QA  +  + V        ++D +  L
Sbjct: 161 VLYVDSNGGMT------ASRLLQLLQARTQDEEKQASALQRIQVVRSFDIFRMLDMLQDL 214

Query: 158 ---------TPRAEIEGDMGESLPGMQAR------LMSQALRKLTSSISRSKCILVFINQ 202
                    T    ++  + +S+  + A       LM Q  R+L          +V  N 
Sbjct: 215 RGTIAQQEATSSGAVKVVIVDSVTAVAAPLLGGLALMMQLARELKILARDLGVAVVVTNH 274

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRL 231
           +        G       G +  F  S R+
Sbjct: 275 LTRDWD---GRRFKPALGRSWSFVPSTRI 300


>gi|11994864|dbj|BAB19971.1| Trad-d2 [Mus musculus]
 gi|11994874|dbj|BAB19979.1| Trad-d2 [Mus musculus]
          Length = 324

 Score = 42.9 bits (99), Expect = 0.087,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 68/209 (32%), Gaps = 26/209 (12%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGT 97
             +     ++S+G   LD  L   G   G + EI G   SGKT + L   A         
Sbjct: 73  EELKTSTAILSTGIGSLDKLL-DAGLYTGEVTEIVGGPGSGKTQVCLCVAANVAHSLQQN 131

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
             +VD+   +           L+ L     D  +QA  +  + V        ++D +  L
Sbjct: 132 VLYVDSNGGMT------ASRLLQLLQARTQDEEKQASALQRIQVVRSFDIFRMLDMLQDL 185

Query: 158 ---------TPRAEIEGDMGESLPGMQAR------LMSQALRKLTSSISRSKCILVFINQ 202
                    T    ++  + +S+  + A       LM Q  R+L          +V  N 
Sbjct: 186 RGTIAQQEATSSGAVKVVIVDSVTAVAAPLLGGLALMMQLARELKILARDLGVAVVVTNH 245

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRL 231
           +        G       G +  F  S R+
Sbjct: 246 LTRDWD---GRRFKPALGRSWSFVPSTRI 271


>gi|302535144|ref|ZP_07287486.1| DNA repair protein RadA [Streptomyces sp. C]
 gi|302444039|gb|EFL15855.1| DNA repair protein RadA [Streptomyces sp. C]
          Length = 471

 Score = 42.5 bits (98), Expect = 0.088,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 5/129 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G +V + G    GK+TL L   A++  +     +V  E +  
Sbjct: 76  STGVDELDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLDVAAKAATSDHRTLYVTGEESAS 134

Query: 109 SIYARKLGVD-LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
            +  R   ++ L + L    +T    L      + +    ++V+DSV  +          
Sbjct: 135 QVRLRADRINALNDHLYLAAETD---LSAVLGHLDAVKPSLLVLDSVQTIASPEIDGAPG 191

Query: 168 GESLPGMQA 176
           G +     A
Sbjct: 192 GMAQVREVA 200


>gi|21226420|ref|NP_632342.1| flagellar accessory protein FlaH [Methanosarcina mazei Go1]
 gi|20904679|gb|AAM30014.1| flagella related protein FlaH [Methanosarcina mazei Go1]
          Length = 238

 Score = 42.5 bits (98), Expect = 0.088,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 66/188 (35%), Gaps = 31/188 (16%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
           G I +   ++SSG+  +D  LG  G P G +V I G   +GK+      +          
Sbjct: 2   GEIEDKKNIISSGNDEIDKKLGE-GIPLGSLVLIEGENDTGKSVFCQQMVYGGLNQLHRI 60

Query: 99  AFVDAEHALDSIYARKLGVDLK-------NLLISQPDT----------GEQALEITDMLV 141
           A+   E+ + S+ A+   + L              P             +  L +    +
Sbjct: 61  AYYSTENTVKSMLAQMDSLSLDISDFYSWGYFRIFPVHLEGVEWTSEQMKGTLHLVTTHI 120

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           +S    +I+IDS+   T  ++ +              + + L  L +   +   I + ++
Sbjct: 121 KSVREKVIIIDSLTMFTTYSDEDN-------------ILEFLTSLKNLCDKGYTIFITLH 167

Query: 202 QMRMKIGV 209
           Q   K   
Sbjct: 168 QHAFKEDT 175


>gi|297159390|gb|ADI09102.1| DNA repair protein RadA [Streptomyces bingchenggensis BCW-1]
          Length = 472

 Score = 42.5 bits (98), Expect = 0.089,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 3/128 (2%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G +V + G    GK+TL L   A++        ++  E +  
Sbjct: 77  STGVDELDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLDVAAKAATDDHRTLYITGEESAS 135

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +  R     +  L        E  L      + +    ++++DSV  +          G
Sbjct: 136 QVRLRA--DRIGALSEHLYLAAETDLSAVLGHLDTVKPSLLILDSVQTVASPEIDGAPGG 193

Query: 169 ESLPGMQA 176
            +     A
Sbjct: 194 MAQVREVA 201


>gi|297201445|ref|ZP_06918842.1| DNA repair protein RadA [Streptomyces sviceus ATCC 29083]
 gi|197713853|gb|EDY57887.1| DNA repair protein RadA [Streptomyces sviceus ATCC 29083]
          Length = 469

 Score = 42.5 bits (98), Expect = 0.090,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 5/129 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G +V + G    GK+TL L   A+S        +V  E +  
Sbjct: 74  STGVPELDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESAS 132

Query: 109 SIYARKLGVD-LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
            +  R   +  + + L    +T    L      + +    ++++DSV  +          
Sbjct: 133 QVRMRADRIRAIDDQLYLAAETD---LSAVLGHLDAVKPSLLILDSVQTVASPEIDGAPG 189

Query: 168 GESLPGMQA 176
           G +     A
Sbjct: 190 GMAQVREVA 198


>gi|114319789|ref|YP_741472.1| putative circadian clock protein, KaiC [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226183|gb|ABI55982.1| putative circadian clock protein, KaiC [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 492

 Score = 42.5 bits (98), Expect = 0.090,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 60/169 (35%), Gaps = 25/169 (14%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
             SG+   D  L  GG   G I  I GP   GK+T+A    A +   G   +    E  L
Sbjct: 256 FRSGNAAFDEML-HGGLENGTITLITGPSGIGKSTVAAMIAAAAAHDGHRASVFQFEEEL 314

Query: 108 --DSIYARKLGVDLKNLLISQPDTGEQA----------LEITDMLVRSGAVDIIVIDSVA 155
                  R L VD+   L S+    EQ           +      V    +D++VIDSV 
Sbjct: 315 DGYLRRLRALDVDVDGPLQSRGLVVEQIEPLRYLADEFMGDLLQRVEDEEIDVVVIDSVT 374

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
                     DM  +      R +      L  S+SR    ++ +N+  
Sbjct: 375 GF--------DMALNQDEAVQRPL----HTLAKSLSRRGVTVLLVNENH 411



 Score = 36.7 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 88/272 (32%), Gaps = 15/272 (5%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
           G         E VSSG  GLD  L  GG    R   + G    GKTTL L  +  + +  
Sbjct: 7   GDASVAAGLPERVSSGVAGLDQIL-DGGLIARRGYLLRGGPGLGKTTLGLSFLTAAGEGE 65

Query: 96  GTCAF----VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
            T       ++AE   ++         ++ L ++  +      E  D+   S      +I
Sbjct: 66  RTLFIGFQELEAELRANAATVGLDTRGIEFLSLAPTEEFFAGSETYDVFAASDVEQAPMI 125

Query: 152 DSVAALTPRAEIEGDMGES-----LPGMQARLMSQALRKLTSSISRSKCILVFINQ--MR 204
           D+V     R +      +S     L         Q +  L   +      +VF ++  M 
Sbjct: 126 DTVVEAVERIQPHRVFIDSLTHLRLVSADRYQFRQQVVSLLRFLVERGATVVFTSESSME 185

Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
                +    +      A     ++ +   R  + +              V  +   P +
Sbjct: 186 NPDDDLQFLADGVINLEAGPSSRTIEVSKLRGSAAQRGRHEYRVDKSGIHVFPRTVPPTR 245

Query: 265 QVEF---DIMYGEGISFFGELIDLGVKASIVD 293
           ++      + +  G + F E++  G++   + 
Sbjct: 246 RLTDGAGTVQFRSGNAAFDEMLHGGLENGTIT 277


>gi|239906754|ref|YP_002953495.1| DNA repair protein RadA [Desulfovibrio magneticus RS-1]
 gi|239796620|dbj|BAH75609.1| DNA repair protein RadA [Desulfovibrio magneticus RS-1]
          Length = 445

 Score = 42.5 bits (98), Expect = 0.091,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 52/126 (41%), Gaps = 8/126 (6%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LG         +   +G  GLD  LG GG   G  V + G    GK+TL L     +   
Sbjct: 58  LGDHPGA--DFKPFPTGIDGLDRVLG-GGLTPGGAVLLGGEPGIGKSTLLLQLAGLAAAA 114

Query: 95  GGTCAFVDAEHALDS--IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
           G    +V  E +L      A +LGV    LL +       A++I      S A D++++D
Sbjct: 115 GRRVVYVSGEESLPQLKSRAERLGVLHDGLLAASTTDAGAAVDILGA---SPAPDLVILD 171

Query: 153 SVAALT 158
           SV  + 
Sbjct: 172 SVQTMH 177


>gi|256852084|ref|ZP_05557471.1| DNA repair protein RadA [Lactobacillus jensenii 27-2-CHN]
 gi|260661346|ref|ZP_05862259.1| DNA repair protein RadA [Lactobacillus jensenii 115-3-CHN]
 gi|282934876|ref|ZP_06340108.1| DNA repair protein RadA [Lactobacillus jensenii 208-1]
 gi|297205041|ref|ZP_06922437.1| DNA repair protein RadA [Lactobacillus jensenii JV-V16]
 gi|256615496|gb|EEU20686.1| DNA repair protein RadA [Lactobacillus jensenii 27-2-CHN]
 gi|260547801|gb|EEX23778.1| DNA repair protein RadA [Lactobacillus jensenii 115-3-CHN]
 gi|281301057|gb|EFA93369.1| DNA repair protein RadA [Lactobacillus jensenii 208-1]
 gi|297149619|gb|EFH29916.1| DNA repair protein RadA [Lactobacillus jensenii JV-V16]
          Length = 458

 Score = 42.5 bits (98), Expect = 0.091,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 4/112 (3%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            + +    L+  LG GG   G +V I G    GK+TL L  ++              E A
Sbjct: 74  RIPTKFSELNRVLG-GGIVTGSLVLIGGDPGIGKSTLMLQIMSTLASEHKVLYVSGEESA 132

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
                         + +   P+T    +      +     D +VIDS+  + 
Sbjct: 133 SQIKLRADRLGVGNSGMYLYPET---NMSNIRDQISDLKPDFVVIDSIQTMN 181


>gi|156937100|ref|YP_001434896.1| putative circadian clock protein, KaiC [Ignicoccus hospitalis
           KIN4/I]
 gi|156566084|gb|ABU81489.1| putative circadian clock protein, KaiC [Ignicoccus hospitalis
           KIN4/I]
          Length = 287

 Score = 42.5 bits (98), Expect = 0.091,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 99/278 (35%), Gaps = 20/278 (7%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            + +G  G D  +  GG PKG +V + G   +GKT  ++H   +    G    +V  E +
Sbjct: 23  RLRTGVEGFDDLIA-GGIPKGFLVAVVGEPGTGKTVFSIHFAWKGVLDGQKVIYVTTEES 81

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
            +SI ++     +      +         +         +  + ++ +      A+    
Sbjct: 82  RESIISQAAQFGMNFNKAIEEKKMVIIDALLRDKADQWNMVELTVEELLNKIIEAKKYLG 141

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL--K 224
            G++   + +  MS       +   +   ++        ++   +      T   A+   
Sbjct: 142 YGDARVVIDS--MSAFWLDKPAMARKYSYLV-------KRVLNKWNMTIVATSQYAITTS 192

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM---ASPFKQVEFDIMYGEGISFFGE 281
           F     ++    G I+ K  I G + +  V+  KM       +  E +I+ G+G+   G 
Sbjct: 193 FGFGFGIEHVADGIIRFKKMIKGWELKRYVIVEKMRQTPHSLRVHEIEIVDGKGMRVKGP 252

Query: 282 LIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
           +     + ++  K       +G + G  R+  +  L E
Sbjct: 253 VEYTRDEVTLPSK-----VVEGVKRGLARKALEERLME 285


>gi|240102673|ref|YP_002958982.1| RecA-superfamily ATPase implicated in signal transduction, putative
           [Thermococcus gammatolerans EJ3]
 gi|239910227|gb|ACS33118.1| RecA-superfamily ATPase implicated in signal transduction, putative
           [Thermococcus gammatolerans EJ3]
          Length = 245

 Score = 42.5 bits (98), Expect = 0.091,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 31/86 (36%), Gaps = 6/86 (6%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS---QKTGGTCAF 100
            IE + +G +     L  GG P G +V + G   SGKTT     +        T G    
Sbjct: 5   DIERIETGVI---DGLIQGGIPAGSVVLVLGDPKSGKTTFQTQFLYTQTVLHGTPGLAIL 61

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQ 126
           VD         AR  G D   +L   
Sbjct: 62  VDMPKREFLENARLFGWDFSPILDEY 87


>gi|317017278|gb|ADU86041.1| disrupted meiotic cDNA 1 [Stenostachys gracilis]
          Length = 138

 Score = 42.5 bits (98), Expect = 0.092,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 52/149 (34%), Gaps = 18/149 (12%)

Query: 121 NLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           N++ ++  T E    +       +      ++++DSV AL          G      + +
Sbjct: 2   NIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIMDSVIALFR----VDFSGRGELAERQQ 57

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRR 235
            ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +R+
Sbjct: 58  KLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLRK 117

Query: 236 VGSIKDKDSITGNQTRVKVVKNKMASPFK 264
                      G Q   K+         +
Sbjct: 118 GK---------GEQRVCKIFDAPNLPEGE 137


>gi|330963586|gb|EGH63846.1| hypothetical protein PSYAC_02856 [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 206

 Score = 42.5 bits (98), Expect = 0.093,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 11/137 (8%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI-Y 73
           +L+A L   +R   KG       +      +    SG   LD AL  GG+P   + EI  
Sbjct: 6   SLDALLD--ERRVWKG-------RQQSTPQVSPHPSGHAALDSALPTGGWPASALTEILI 56

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
               SG+  L   ++A+    G     V   +          GVDL+ L++ +  T + A
Sbjct: 57  PANGSGELRLLWPSLARLSGIGERIVLVAPPYIPYPQAWLAAGVDLRQLVVIEASTRD-A 115

Query: 134 LEITDMLVRSGAVDIIV 150
           L   +  +RSG+   +V
Sbjct: 116 LWAAEQCLRSGSCGAVV 132


>gi|223985944|ref|ZP_03635980.1| hypothetical protein HOLDEFILI_03286 [Holdemania filiformis DSM
           12042]
 gi|223962131|gb|EEF66607.1| hypothetical protein HOLDEFILI_03286 [Holdemania filiformis DSM
           12042]
          Length = 633

 Score = 42.5 bits (98), Expect = 0.093,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 88/278 (31%), Gaps = 31/278 (11%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKLGVDLKN 121
            P G++  + G    GKTT AL   A     G             +       LG  +K 
Sbjct: 329 IPFGKVTIVQGNPGEGKTTFALRLAAACTTGGTLPGMKPLPPFQVIYQTAEDGLGDTVKP 388

Query: 122 LLISQPDTGEQALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
            L+      ++ L I +        D      ++ + A L     I+  MG+     +A 
Sbjct: 389 RLMEAEADLDRVLVIDEAKRELTLSDERIEKAIMQNGARLIILDPIQAYMGDKADMNKAN 448

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
            +    R+L     R+ C ++ I  +           +   G +A +   S+        
Sbjct: 449 EVRPIFRRLAEVAERTGCAIILIGHL----------NKAAGGQSAYRGLGSIDFRAAARS 498

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPF-KQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
            +        +  RV V      +P  K V F +    G S+ GE      +      SG
Sbjct: 499 VLLIGRVKRESNVRVIVHDKSSLAPEGKPVAFCLDPETGFSWIGEYDITADELL----SG 554

Query: 297 AWFSFKGQRLGQGRENSK----IFLRENIEIAEN-IES 329
           A     G       E ++      L +  E+A   IE 
Sbjct: 555 A-----GGNTATKTEQAERLILDLLADGKELASEDIEK 587


>gi|119719704|ref|YP_920199.1| hypothetical protein Tpen_0794 [Thermofilum pendens Hrk 5]
 gi|119524824|gb|ABL78196.1| putative circadian clock protein, KaiC [Thermofilum pendens Hrk 5]
          Length = 250

 Score = 42.5 bits (98), Expect = 0.093,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 71/204 (34%), Gaps = 24/204 (11%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH--TIAQSQKTGGTCAFVD 102
           IE V +G  G D  L  GG PK  IV + G   +GKT  +             G    ++
Sbjct: 4   IEKVKTGIPGFDELL-YGGIPKRNIVLLSGGPGTGKTIFSQQYLFYGLQNNEPGVLVALE 62

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGE--------QALEITDMLVRSGAVDIIVIDSV 154
                        G D++    S              +A +    +V S      ++D V
Sbjct: 63  EHPVQIRRNMASFGWDVRKYEESGQFAIVDAFTGGIGEAAKRERYVVTSVDDVGELVDVV 122

Query: 155 AALTPRAEIEGDMGES---LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
            A     + E  + +S   L   +  +    L +L   +S      +F++Q+ +      
Sbjct: 123 KAAIRDVKAERAVIDSVSTLYMTKPAMARSILMQLKRVLSGLGATSIFVSQVSV------ 176

Query: 212 GSPETTTGGNALKFYS--SVRLDI 233
              E   GG  ++  +   VRLD+
Sbjct: 177 --TERGFGGPGVEHAADGIVRLDL 198


>gi|328874904|gb|EGG23269.1| putative DNA repair protein [Dictyostelium fasciculatum]
          Length = 476

 Score = 42.5 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           SQ        V+ + S+ LD  L  GG  +G I+EI G   SGKT +A+HT
Sbjct: 116 SQQLCNNNNNVLETKSI-LDRLLEDGGLVRGEIIEIVGDTGSGKTQIAMHT 165


>gi|301385167|ref|ZP_07233585.1| hypothetical protein PsyrptM_21132 [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059722|ref|ZP_07251263.1| hypothetical protein PsyrptK_07010 [Pseudomonas syringae pv. tomato
           K40]
 gi|302134130|ref|ZP_07260120.1| hypothetical protein PsyrptN_22211 [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 207

 Score = 42.5 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 11/137 (8%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI-Y 73
           +L+A L   +R   KG       +      +    SG   LD AL  GG+P   + EI  
Sbjct: 7   SLDALLD--ERRVWKG-------RQQSTPQVSPHPSGHAALDNALPTGGWPASALTEILI 57

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
               SG+  L   ++A+    G     V   +          GVDL+ L++ +  T + A
Sbjct: 58  PANGSGELRLLWPSLARLSAIGERIVLVAPPYIPYPQAWLAAGVDLRQLVVIEASTRD-A 116

Query: 134 LEITDMLVRSGAVDIIV 150
           L   +  +RSG+   ++
Sbjct: 117 LWAAEQCLRSGSCGAVL 133


>gi|313125445|ref|YP_004035709.1| reca-superfamily ATPase possibly involved in signal transduction
           [Halogeometricum borinquense DSM 11551]
 gi|312291810|gb|ADQ66270.1| RecA-superfamily ATPase possibly involved in signal transduction
           [Halogeometricum borinquense DSM 11551]
          Length = 234

 Score = 42.5 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 75/235 (31%), Gaps = 15/235 (6%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            + SG  G D  +  G  P GR+  + GP  SGKTT     +A+  + G  C ++    +
Sbjct: 2   RIPSGVSGFDHLIQGGFLP-GRLYVLSGPPGSGKTTFTTQYVAEGLRNGENCMYITMHES 60

Query: 107 LDSIY---------ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            + +             L    +   I+      + +          +    + D + A 
Sbjct: 61  REELVNDMSSYDFGFETLTESDQFRFINLASQKGKHVLNQFSGGGGSSGVQSLTDKIVAF 120

Query: 158 TPRAEIEGDMGESLPGMQARLM--SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215
               +++  + +S   +Q       Q + +  +++ +     + I++M            
Sbjct: 121 VNSRKVDRLVIDSTMLLQLLFTGDDQEMTRFLTALKQGDATTLLISEMT-DPSSYSDEHF 179

Query: 216 TTTGGNALKFYSSVRLDIRRVGSIK-DKDSITGNQTRVKVVKNK-MASPFKQVEF 268
              G      Y       R +  +K     I  +   +       +  P   VEF
Sbjct: 180 LAHGVIFFHNYLEATGMTRGIQVVKMRGTDIDCDIRSLNFTDEGLVVDPMDHVEF 234


>gi|213966982|ref|ZP_03395132.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|213928304|gb|EEB61849.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
          Length = 206

 Score = 42.5 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 11/137 (8%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI-Y 73
           +L+A L   +R   KG       +      +    SG   LD AL  GG+P   + EI  
Sbjct: 6   SLDALLD--ERRVWKG-------RQQSTPQVSPHPSGHAALDNALPTGGWPASALTEILI 56

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
               SG+  L   ++A+    G     V   +          GVDL+ L++ +  T + A
Sbjct: 57  PANGSGELRLLWPSLARLSAIGERIVLVAPPYIPYPQAWLAAGVDLRQLVVIEASTRD-A 115

Query: 134 LEITDMLVRSGAVDIIV 150
           L   +  +RSG+   ++
Sbjct: 116 LWAAEQCLRSGSCGAVL 132


>gi|255038517|ref|YP_003089138.1| DNA repair protein RadA [Dyadobacter fermentans DSM 18053]
 gi|254951273|gb|ACT95973.1| DNA repair protein RadA [Dyadobacter fermentans DSM 18053]
          Length = 457

 Score = 42.5 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 55/173 (31%), Gaps = 14/173 (8%)

Query: 23  IQRVYGKGAIMQ----LGSQGSIFEGI-----EVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           I++   K A+      L ++      I       + +    L+  LG GG   G +V I 
Sbjct: 38  IEKDDKKTAVSWKSVNLANKPRSIAEIVYENEPRIRTFDEELNRVLG-GGIVPGSLVLIG 96

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
           G    GK+TL L                +   A   + A ++     N       T  Q 
Sbjct: 97  GEPGIGKSTLMLQIALTLSNKRVLYVSGEESEAQIKMRAERMAAKSDNCF---ILTDTQT 153

Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
             I    +     +I+++DS+  +       G    S          +  +++
Sbjct: 154 QNIFRQ-IEDFQPEILIVDSIQTMQSTYIESGAGSVSQVRECTAEFMKYAKEM 205


>gi|313498228|gb|ADR59594.1| Non-specific serine/threonine protein kinase [Pseudomonas putida
           BIRD-1]
          Length = 481

 Score = 42.5 bits (98), Expect = 0.095,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI--AQSQKTGGTCAFVDAE 104
            +SSG    D  LG GG   G +  + GP   GKT+L L  +  +  Q  G    F +  
Sbjct: 242 RISSGVPTFDEMLG-GGLATGSVSLLMGPSGIGKTSLGLAFLGASTPQAPGLHFGFYETP 300

Query: 105 HALD 108
             L 
Sbjct: 301 ERLR 304



 Score = 41.0 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 1/77 (1%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + + ++ + +G  GLD  L  GG   G    I GP  +GKT LA        + GG    
Sbjct: 1   MAQALKRLVTGIDGLDALL-KGGLIAGASYIIQGPPGAGKTILANQLACGHVRGGGRVLV 59

Query: 101 VDAEHALDSIYARKLGV 117
                       + L  
Sbjct: 60  ATLLSESHERLFQYLST 76


>gi|26990539|ref|NP_745964.1| non-specific serine/threonine protein kinase [Pseudomonas putida
           KT2440]
 gi|24985517|gb|AAN69428.1|AE016578_14 conserved hypothetical protein [Pseudomonas putida KT2440]
          Length = 481

 Score = 42.5 bits (98), Expect = 0.095,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI--AQSQKTGGTCAFVDAE 104
            +SSG    D  LG GG   G +  + GP   GKT+L L  +  +  Q  G    F +  
Sbjct: 242 RISSGVPTFDEMLG-GGLATGSVSLLMGPSGIGKTSLGLAFLGASTPQAPGLHFGFYETP 300

Query: 105 HALD 108
             L 
Sbjct: 301 ERLR 304



 Score = 41.0 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 1/77 (1%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + + ++ + +G  GLD  L  GG   G    I GP  +GKT LA        + GG    
Sbjct: 1   MAQALKRLVTGIDGLDALL-KGGLIAGASYIIQGPPGAGKTILANQLACGHVRGGGRVLV 59

Query: 101 VDAEHALDSIYARKLGV 117
                       + L  
Sbjct: 60  ATLLSESHERLFQYLST 76


>gi|148547161|ref|YP_001267263.1| non-specific serine/threonine protein kinase [Pseudomonas putida
           F1]
 gi|148511219|gb|ABQ78079.1| Non-specific serine/threonine protein kinase [Pseudomonas putida
           F1]
          Length = 481

 Score = 42.5 bits (98), Expect = 0.095,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI--AQSQKTGGTCAFVDAE 104
            +SSG    D  LG GG   G +  + GP   GKT+L L  +  +  Q  G    F +  
Sbjct: 242 RISSGVPTFDEMLG-GGLATGSVSLLMGPSGIGKTSLGLAFLGASTPQAPGLHFGFYETP 300

Query: 105 HALD 108
             L 
Sbjct: 301 ERLR 304



 Score = 41.0 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 1/77 (1%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + + ++ + +G  GLD  L  GG   G    I GP  +GKT LA        + GG    
Sbjct: 1   MAQALKRLVTGIDGLDALL-KGGLIAGASYIIQGPPGAGKTILANQLACGHVRGGGRVLV 59

Query: 101 VDAEHALDSIYARKLGV 117
                       + L  
Sbjct: 60  ATLLSESHERLFQYLST 76


>gi|327310808|ref|YP_004337705.1| AAA ATPase [Thermoproteus uzoniensis 768-20]
 gi|326947287|gb|AEA12393.1| AAA ATPase [Thermoproteus uzoniensis 768-20]
          Length = 371

 Score = 42.5 bits (98), Expect = 0.097,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 65/183 (35%), Gaps = 13/183 (7%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           V+ +G   LD  L  GG   G +  + GP  SGK+T+ L      +K G    ++     
Sbjct: 200 VLKTGVPCLDETL--GGLVGGAVSALIGPTGSGKSTVMLKAAENLKKAGKRAYYL---SF 254

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL--TPRAEIE 164
           L      +L  D++++  + P   E  L    +L      D + ID V  L      ++ 
Sbjct: 255 LGDADLLRLRYDVESI--NAPLDAESLLLQLYILAVKLKADAVFIDGVDLLARFFEEKVF 312

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
             +  +L  +        +  LT        I  +++ +         + +T TG     
Sbjct: 313 NTVLLNLIRLVKASGVPVMVSLTRD----WGIANYLDAVAHISERRVTAVKTPTGAVGTA 368

Query: 225 FYS 227
              
Sbjct: 369 HSC 371


>gi|28869979|ref|NP_792598.1| hypothetical protein PSPTO_2793 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28853224|gb|AAO56293.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|331014286|gb|EGH94342.1| hypothetical protein PLA106_00275 [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 206

 Score = 42.5 bits (98), Expect = 0.098,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 11/137 (8%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI-Y 73
           +L+A L   +R   KG       +      +    SG   LD AL  GG+P   + EI  
Sbjct: 6   SLDALLD--ERRVWKG-------RQQSTPQVSPHPSGHAALDSALPTGGWPASALTEILI 56

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
               SG+  L   ++A+    G     V   +          GVDL+ L++ +  T + A
Sbjct: 57  PANGSGELRLLWPSLARLSAIGERIVLVAPPYIPYPQAWLAAGVDLRQLVVIEASTRD-A 115

Query: 134 LEITDMLVRSGAVDIIV 150
           L   +  +RSG+   ++
Sbjct: 116 LWAAEQCLRSGSCGAVL 132


>gi|295700868|ref|YP_003608761.1| circadian clock protein, KaiC [Burkholderia sp. CCGE1002]
 gi|295440081|gb|ADG19250.1| putative circadian clock protein, KaiC [Burkholderia sp. CCGE1002]
          Length = 504

 Score = 42.5 bits (98), Expect = 0.099,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G+ G D  LG GG   G    I GP   GKTT  +  +  + + G  CA+   +  L 
Sbjct: 253 STGTPGFDALLG-GGLVPGTNSLIIGPSGVGKTTTVVSCLLAALERGDRCAYYVFDETLS 311

Query: 109 --SIYARKLGVDLKNLLIS 125
                   LG+DL   + S
Sbjct: 312 TLVSRCASLGMDLAPHVDS 330



 Score = 41.0 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 75/218 (34%), Gaps = 35/218 (16%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +SSG  G+D  LG GG    R+  + G   +GKTTLAL  + +    G T  +V     
Sbjct: 11  RLSSGIEGIDDILG-GGLTPNRMYLVEGVPGTGKTTLALQFLLKGLDEGQTGLYVTLSET 69

Query: 107 --------------------LDSIYARKLGVDLKNLLISQPDTGE-QALEITDMLVRSGA 145
                               L+ +    L    +  ++   +    +++      V    
Sbjct: 70  HAELLAIGASHGWDLSRFKILEQLPEEGLEPQYEQTVLHPAEVELGESVRNVIEHVDELK 129

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT---SSISRSKCILVFINQ 202
              +V+DS++ L   AE        +  ++    ++A   L    +S S S   L  I  
Sbjct: 130 PARVVLDSLSELRLLAENPLRYRRQILALKHHFSTRACTVLLLDDTSASASGIQLHSIVH 189

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
             + +  +        G          RL I ++  IK
Sbjct: 190 GVISLDNIAHDY---GGNRR-------RLRIAKMRGIK 217


>gi|254525003|ref|ZP_05137058.1| DNA repair protein RadA [Stenotrophomonas sp. SKA14]
 gi|219722594|gb|EED41119.1| DNA repair protein RadA [Stenotrophomonas sp. SKA14]
          Length = 458

 Score = 42.5 bits (98), Expect = 0.099,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 51/139 (36%), Gaps = 4/139 (2%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+G    D  LG GG  +G +V + G    GK+TL L  +A+         +V  E +
Sbjct: 76  RVSTGIGEFDRVLG-GGLVEGAVVLVGGDPGIGKSTLLLQAVAKMAAE-LPVLYVTGEES 133

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           L  +  R     L+  L       E  +E            +IV DSV  L   +     
Sbjct: 134 LAQVAGRA--HRLELPLDGVNALAETGVESILQHASRAGPRLIVADSVQTLWTESLTAAP 191

Query: 167 MGESLPGMQARLMSQALRK 185
              S     A  + +  ++
Sbjct: 192 GSVSQVRESAARLVRFAKE 210


>gi|190573376|ref|YP_001971221.1| DNA repair protein RadA [Stenotrophomonas maltophilia K279a]
 gi|190011298|emb|CAQ44911.1| putative DNA repair protein RadA (DNA repair protein SMS)
           [Stenotrophomonas maltophilia K279a]
          Length = 458

 Score = 42.5 bits (98), Expect = 0.099,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 51/139 (36%), Gaps = 4/139 (2%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+G    D  LG GG  +G +V + G    GK+TL L  +A+         +V  E +
Sbjct: 76  RVSTGIGEFDRVLG-GGLVEGAVVLVGGDPGIGKSTLLLQAVAKMAAE-LPVLYVTGEES 133

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           L  +  R     L+  L       E  +E            +IV DSV  L   +     
Sbjct: 134 LAQVAGRA--HRLELPLDGVNALAETGVESILQHASRAGPRLIVADSVQTLWTESLTAAP 191

Query: 167 MGESLPGMQARLMSQALRK 185
              S     A  + +  ++
Sbjct: 192 GSVSQVRESAARLVRFAKE 210


>gi|296138333|ref|YP_003645576.1| DNA repair protein RadA [Tsukamurella paurometabola DSM 20162]
 gi|296026467|gb|ADG77237.1| DNA repair protein RadA [Tsukamurella paurometabola DSM 20162]
          Length = 461

 Score = 42.5 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 54/165 (32%), Gaps = 11/165 (6%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GTCAFV 101
                +  G   LD  LG GG   G ++ + G    GK+TL L  + +   TG G   +V
Sbjct: 69  NSTRALPVGIGELDRVLG-GGIVPGSVILLAGEPGVGKSTLLLDVVHRWASTGRGKSLYV 127

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
             E +   +  R        L        E  L      V   +  ++V+DSV  L+   
Sbjct: 128 TGEESAGQVRLRA--ERTGALSDELYLAAESDLGTVLGHVEQISPTLMVVDSVQTLSASG 185

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
                 G +               LTS    S   ++ +  +   
Sbjct: 186 VDGVHGGVTQVRA-------ITATLTSLAKASGIAVILVGHVTKD 223


>gi|224076219|ref|XP_002193457.1| PREDICTED: RAD51-like 3 (S. cerevisiae) [Taeniopygia guttata]
          Length = 161

 Score = 42.5 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
             +     ++ +GS  LD  L   G   G + E+ G   +GKT L L
Sbjct: 73  EELKSSTAILPTGSPSLDQLL-DSGLYTGEVTELMGAPGTGKTQLCL 118


>gi|308175917|ref|YP_003915323.1| DNA repair protein RadA [Arthrobacter arilaitensis Re117]
 gi|307743380|emb|CBT74352.1| DNA repair protein RadA [Arthrobacter arilaitensis Re117]
          Length = 464

 Score = 42.5 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 4/120 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            SG   LD  LG GG      + + G    GK+TL L   A++ +TG    ++  E +  
Sbjct: 74  PSGVSELDRVLG-GGLVPAAAILLAGEPGVGKSTLLLDVAAKAAQTGLRVLYLTGEESAA 132

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            + +R     +  +  +     E  L +    ++     ++++DSV      AEI+G  G
Sbjct: 133 QVKSRA--ERINAIADTLYLAAETDLSLALGQIQEIDPQLLILDSVQ-TFSSAEIDGAAG 189


>gi|169830871|ref|YP_001716853.1| putative circadian clock protein, KaiC [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637715|gb|ACA59221.1| putative circadian clock protein, KaiC [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 467

 Score = 42.5 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-- 108
           G  GLD  L  GG  +G I  I G   +GKT LAL  +    + G    F+  E  ++  
Sbjct: 242 GITGLDEML-CGGLTEGTITLISGGTGTGKTALALKFLLDGAEKGEKGLFLSFEQPVNQL 300

Query: 109 SIYARKLGVDLKNL 122
              AR+LG ++   
Sbjct: 301 QDTARRLGWEIDRY 314


>gi|82907649|gb|ABB93036.1| disrupted meiotic cDNA 1 [Aegilops sharonensis]
          Length = 138

 Score = 42.5 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 51/150 (34%), Gaps = 18/150 (12%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N++ ++  T E    +       +      ++++DSV AL          G      + 
Sbjct: 1   DNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAERQ 56

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR 234
           +  +Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +R
Sbjct: 57  QKXAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           +           G Q   K+         +
Sbjct: 117 KGK---------GEQRVCKIFDAPNLPEGE 137


>gi|307693716|ref|ZP_07635953.1| hypothetical protein RbacD_12019 [Ruminococcaceae bacterium D16]
          Length = 633

 Score = 42.5 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 75/232 (32%), Gaps = 15/232 (6%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKLGVDLKN 121
            P G++  + G    GKTT AL   A     G             +       LG  +K 
Sbjct: 329 IPFGKVTIVQGNPGEGKTTFALRLAAACTTGGTLPGMKPLPPFQVIYQTAEDGLGDTVKP 388

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD----MGESLPGMQAR 177
            LI      ++ L I +        D  +  ++     R  I       MGE     +A 
Sbjct: 389 RLIEAAADLDRVLVIDEAKRELTLSDERIEKAITQNGARLIILDPIQAYMGEKTDMNRAN 448

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
            +    R+L     R+ C ++ I    +       S     G    +  +   L I R  
Sbjct: 449 EVRPMFRRLADVAERTGCAVILI--GHLNKAAGGQSAYRGLGSIDFRAAARSVLLIGR-- 504

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
            +K + ++      +   K+ +A   K V F +    G S+ GE      + 
Sbjct: 505 -VKREPNV----RVIVHDKSSLAPEGKPVAFCLDPETGFSWIGEYDITADEL 551


>gi|289673823|ref|ZP_06494713.1| KaiC [Pseudomonas syringae pv. syringae FF5]
          Length = 255

 Score = 42.5 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 3/102 (2%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G  GLD  L  GG  +  +  + G   +GKTT+AL  +      G    ++        
Sbjct: 8   TGIEGLDDILA-GGLSRSHVFLLEGEPGTGKTTVALQFLQAGAAAGEISLYITLSETESE 66

Query: 110 IYARKL--GVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           + +     G +L   +     T  ++L   D          +
Sbjct: 67  LRSGAASHGWELDEHINIFELTPPESLLDADHHQSLLYSSDL 108


>gi|182437922|ref|YP_001825641.1| DNA repair protein RadA [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|326778558|ref|ZP_08237823.1| DNA repair protein RadA [Streptomyces cf. griseus XylebKG-1]
 gi|178466438|dbj|BAG20958.1| putative DNA repair protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326658891|gb|EGE43737.1| DNA repair protein RadA [Streptomyces cf. griseus XylebKG-1]
          Length = 473

 Score = 42.5 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 5/129 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G +V + G    GK+TL L   A++        +V AE +  
Sbjct: 75  STGVGELDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDDHRTLYVTAEESAS 133

Query: 109 SIYARKLGVD-LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
            +  R   +  + + L    +T    L      + +    ++++DSV  +          
Sbjct: 134 QVRLRADRIRAINDHLYLAAETD---LSAVLGHLDAVKPSLLILDSVQTVASPEIDGAPG 190

Query: 168 GESLPGMQA 176
           G +     A
Sbjct: 191 GMAQVREVA 199


>gi|170291049|ref|YP_001737865.1| Rad51 domain-containing protein [Candidatus Korarchaeum cryptofilum
           OPF8]
 gi|170175129|gb|ACB08182.1| Rad51 domain protein [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 298

 Score = 42.5 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 73/222 (32%), Gaps = 38/222 (17%)

Query: 69  IVEIYGPESSGKTTLALHTIAQ---SQKTGGT----CAFVDAEHALDSIY---------- 111
           I  IYGP +SGKT   ++   +   +++ GG       F+D E   D             
Sbjct: 94  ITGIYGPPASGKTQFCIYMTVRSLLNEERGGISSERAVFIDTEGTFDPGRASAFLRQNGL 153

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           + +    +  L ++     ++ALEI    VRSG   +I +DS++    +      + E  
Sbjct: 154 SERDLSRIDVLRVNNIIQLKEALEIAMSYVRSGTSKLICLDSISYPFRQYGGLKGLRERQ 213

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
             +Q  L+S        S+       +            +G    + GG  L       L
Sbjct: 214 EDLQEVLVSLRRIADRGSVVIMTMHAI-----------KWGRDLYSKGGFVLSHTPHNML 262

Query: 232 DIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
             R+             +  V +  +    P +        G
Sbjct: 263 CFRK----------VRGKVIVTLEDSSYLPPGQAAFIVRDDG 294


>gi|11499038|ref|NP_070272.1| hypothetical protein AF1443 [Archaeoglobus fulgidus DSM 4304]
 gi|2649128|gb|AAB89805.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 248

 Score = 42.5 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 28/85 (32%), Gaps = 4/85 (4%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E V +G  G D  L  GG  + R   + GP  SGKT  A+  +    +         A 
Sbjct: 5   LERVPTGIPGFDE-LCSGGLLRDRSYLVSGPSGSGKTIFAMQYLVNGIEKYNEPGVFVAT 63

Query: 105 HALDSIYARK---LGVDLKNLLISQ 126
                         G DL+      
Sbjct: 64  EERPQHLREHFLTFGWDLEKYEDEN 88


>gi|254558671|ref|YP_003065766.1| hypothetical protein METDI0019 [Methylobacterium extorquens DM4]
 gi|254265949|emb|CAX21698.1| conserved hypothetical protein, ATP-binding domain
           [Methylobacterium extorquens DM4]
          Length = 508

 Score = 42.5 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+G  GLD  L  GG    R+  + G   +GKTTLAL  + +     G   +V     
Sbjct: 17  RISTGISGLDEVL-CGGLTPDRLYLLEGTPGTGKTTLALQFLLEGAARKGRSLYVTLSET 75

Query: 107 LDSIYARKL--GVDLKNL 122
            D + A  L  G  L  +
Sbjct: 76  ADELRAAALSHGWSLDGI 93


>gi|240136801|ref|YP_002961268.1| hypothetical protein MexAM1_META1p0018 [Methylobacterium extorquens
           AM1]
 gi|240006765|gb|ACS37991.1| conserved hypothetical protein with ATP-binding domain
           [Methylobacterium extorquens AM1]
          Length = 508

 Score = 42.5 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+G  GLD  L  GG    R+  + G   +GKTTLAL  + +     G   +V     
Sbjct: 17  RISTGISGLDEVL-CGGLTPDRLYLLEGTPGTGKTTLALQFLLEGAARKGRSLYVTLSET 75

Query: 107 LDSIYARKL--GVDLKNL 122
            D + A  L  G  L  +
Sbjct: 76  ADELRAAALSHGWSLDGI 93


>gi|218528102|ref|YP_002418918.1| circadian clock protein, KaiC [Methylobacterium chloromethanicum
           CM4]
 gi|218520405|gb|ACK80990.1| putative circadian clock protein, KaiC [Methylobacterium
           chloromethanicum CM4]
          Length = 520

 Score = 42.5 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+G  GLD  L  GG    R+  + G   +GKTTLAL  + +     G   +V     
Sbjct: 29  RISTGISGLDEVL-CGGLTPDRLYLLEGTPGTGKTTLALQFLLEGAARKGRSLYVTLSET 87

Query: 107 LDSIYARKL--GVDLKNL 122
            D + A  L  G  L  +
Sbjct: 88  ADELRAAALSHGWSLDGI 105


>gi|163849476|ref|YP_001637519.1| non-specific serine/threonine protein kinase [Methylobacterium
           extorquens PA1]
 gi|163661081|gb|ABY28448.1| Non-specific serine/threonine protein kinase [Methylobacterium
           extorquens PA1]
          Length = 520

 Score = 42.5 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+G  GLD  L  GG    R+  + G   +GKTTLAL  + +     G   +V     
Sbjct: 29  RISTGISGLDEVL-CGGLTPDRLYLLEGTPGTGKTTLALQFLLEGAARKGRSLYVTLSET 87

Query: 107 LDSIYARKL--GVDLKNL 122
            D + A  L  G  L  +
Sbjct: 88  ADELRAAALSHGWSLDGI 105


>gi|189346630|ref|YP_001943159.1| DNA repair protein RadA [Chlorobium limicola DSM 245]
 gi|189340777|gb|ACD90180.1| DNA repair protein RadA [Chlorobium limicola DSM 245]
          Length = 457

 Score = 42.5 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 73/242 (30%), Gaps = 17/242 (7%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   LD  LG GG  +   V + G    GK+TL L    +           +       
Sbjct: 73  TGIGELDRVLG-GGIMQASAVLVGGEPGIGKSTLMLQLAPRMAPAKVLYISGEESPNQIR 131

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
             AR+L +   NLL+         LE     +      ++++DS+  +            
Sbjct: 132 ERARRLSIRADNLLLLPEVN----LERIIEAIEQEKPGLVIVDSIQTVYSEEYQSSAGTI 187

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           +     A ++ +  ++L   +     I         K             G   + Y  +
Sbjct: 188 TQIRECAAMLIRKAKQLNVILMIIGHITKEGALAGPKALEHMVDTVLQFEGEGYQRYRII 247

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
           R    R GS  +     G     ++ +  +       EF   +  G      +    + A
Sbjct: 248 RSVKNRFGSTNE----IG---VFRMEETGLEEVGNPSEF---FISG--RISGIPGNSILA 295

Query: 290 SI 291
            I
Sbjct: 296 GI 297


>gi|194360473|gb|ACF57884.1| disrupted meiotic cDNA 1 protein [Leymus mollis]
          Length = 138

 Score = 42.5 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 52/150 (34%), Gaps = 18/150 (12%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N++ ++  T E    +       +      +++++SV AL          G      + 
Sbjct: 1   DNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIMNSVIALFR----VDFSGRGELAERQ 56

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR 234
           + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +R
Sbjct: 57  QKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           +           G Q   K+         +
Sbjct: 117 KGK---------GEQRVCKIFDAPNLPEGE 137


>gi|261334683|emb|CBH17677.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 423

 Score = 42.5 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           V+S+G   LD  L  GG   G + EI G   +GKT LAL+   +
Sbjct: 132 VISTGHKCLDDVLA-GGVKCGLVTEITGASGTGKTALALNLAGR 174


>gi|71755721|ref|XP_828775.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70834161|gb|EAN79663.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 423

 Score = 42.5 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           V+S+G   LD  L  GG   G + EI G   +GKT LAL+   +
Sbjct: 132 VISTGHKCLDDVLA-GGVKCGLVTEITGASGTGKTALALNLAGR 174


>gi|217967094|ref|YP_002352600.1| putative circadian clock protein, KaiC [Dictyoglomus turgidum DSM
           6724]
 gi|217336193|gb|ACK41986.1| putative circadian clock protein, KaiC [Dictyoglomus turgidum DSM
           6724]
          Length = 303

 Score = 42.5 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 65/202 (32%), Gaps = 44/202 (21%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLD-------------IALGIGGFPKGRIVEIYGPES 77
           AI+ L   G     I  + +G  GLD               + +GG P+  +  + G   
Sbjct: 19  AILSLKDIGDRAVEIRGIPTGIEGLDNLFFTTKIEKGKTRVVPLGGIPQYSVFNLTGISD 78

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALD----------SIYARKLGVDLKNLLISQP 127
           +GK+ +      +    G   AF+  E              +    +  V  +N++    
Sbjct: 79  TGKSLMGEQFAIKQASLGNAVAFITVESPAHFVATSMKSRAAAMGVEESVIDENIVFIDA 138

Query: 128 DTG-------EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            +           L      ++   +   VIDS+  L    E+   +             
Sbjct: 139 ASYSKLREDVPTLLATLAHAIKKYKIKYTVIDSITGLYEAKEMMARI------------- 185

Query: 181 QALRKLTSSISRSKCILVFINQ 202
             +R+L + + +     +FI+Q
Sbjct: 186 -IVRQLFNFMKKWYQTAIFISQ 206


>gi|126567142|gb|ABO20988.1| KaiC [Arthrospira maxima FACHB438]
          Length = 517

 Score = 42.5 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 72/219 (32%), Gaps = 33/219 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG   LD   G GGF K  I+   G   +GKT L    +  + 
Sbjct: 252 MRLTQRSSNI----RVSSGDKILDEMCG-GGFFKDSIILATGATGTGKTLLVSIFVNNAC 306

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
           ++         E +   +        L            ++ S P++   E  L+I    
Sbjct: 307 QSNERAILFAYEESRAQLLRNAHSWGLDFEAMERKGLLKIICSYPESTGLEDHLQIIRSE 366

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+ +    Q +  +T    + +    F 
Sbjct: 367 ISEFKPSRIAIDSLSALA-------------RGVSSNAFRQFVIAVTGYAKQEEITGFFT 413

Query: 201 N---QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           N   Q      +      T T    +  Y  +R  + R 
Sbjct: 414 NTTDQFMGSHSITDSHISTITDTILMLQYVEIRGQMSRA 452



 Score = 39.4 bits (90), Expect = 0.80,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 51/154 (33%), Gaps = 24/154 (15%)

Query: 35  LGSQGSIFEGIEV--VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           LGS+ +  + I V  + +   G D  +  GG P GR   I G   +GKT  A+  +    
Sbjct: 6   LGSEPNKRKLISVQKIRTMIEGFDD-ISHGGMPAGRSTLISGTSGTGKTLFAVQFLYNGI 64

Query: 93  ---KTGGTCAFVDAEHALDSIYARKLGVDLK------NLLISQPDTGEQALEI------- 136
                 G     +         A   G DL+       L I       +  +I       
Sbjct: 65  TYFDEPGILVTFEEAPTDIIKNAASFGWDLQGLIDEGKLFILDASPDPEGQDIVGNFDLS 124

Query: 137 -----TDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
                    +R      + IDSV A+  + E  G
Sbjct: 125 ALIERIQYGIRKYKAKRVSIDSVTAIFQQYEAAG 158


>gi|254172008|ref|ZP_04878684.1| RecA superfamily ATPase implicated in signal transduction
           [Thermococcus sp. AM4]
 gi|214033904|gb|EEB74730.1| RecA superfamily ATPase implicated in signal transduction
           [Thermococcus sp. AM4]
          Length = 242

 Score = 42.5 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 31/86 (36%), Gaps = 6/86 (6%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT---CAF 100
            IE + +G +     L  GG P G +V + G   SGKTT     +       GT      
Sbjct: 2   DIERIETGVI---DGLIQGGIPAGSVVLVLGDPKSGKTTFQTQFLYTQTVLRGTPGLAIL 58

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQ 126
           VD         AR  G D   +L   
Sbjct: 59  VDMPKREFLENARLFGWDFSPILDEY 84


>gi|220923473|ref|YP_002498775.1| DnaB domain-containing/helicase domain-containing protein
           [Methylobacterium nodulans ORS 2060]
 gi|219948080|gb|ACL58472.1| DnaB domain protein helicase domain protein [Methylobacterium
           nodulans ORS 2060]
          Length = 479

 Score = 42.5 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
                   V +SG   +D A+G GG   GR++ + G    GKT L L    +S K+G   
Sbjct: 186 ARSGTSSPVPTSGFKDIDRAIG-GGLRAGRLIVLAGRPGMGKTILGLGIARRSAKSGAGA 244

Query: 99  AFVDAE 104
           AF   E
Sbjct: 245 AFFSLE 250


>gi|292659670|pdb|3K09|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant S431d
           Of The Kaic Circadian Clock Protein
 gi|292659671|pdb|3K09|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant S431d
           Of The Kaic Circadian Clock Protein
 gi|292659674|pdb|3K09|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant S431d
           Of The Kaic Circadian Clock Protein
          Length = 519

 Score = 42.5 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 72/219 (32%), Gaps = 33/219 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG + LD   G GGF K  I+   G   +GKT L    +  + 
Sbjct: 252 MRLTQRSSNV----RVSSGVVRLDEMCG-GGFFKDSIILATGATGTGKTLLVSRFVENAC 306

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
                      E +   +        +            ++ + P++   E  L+I    
Sbjct: 307 ANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSE 366

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +   +F 
Sbjct: 367 INDFKPARIAIDSLSALA-------------RGVSNNAFRQFVIGVTGYAKQEEITGLFT 413

Query: 201 N---QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           N   Q      +     +  T    L  Y  +R ++ R 
Sbjct: 414 NTSDQFMGAHSITDSHIDXITDTIILLQYVEIRGEMSRA 452


>gi|31087819|gb|AAN27944.1| disrupted meiotic cDNA 1 [Hordeum bulbosum]
          Length = 139

 Score = 42.5 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 52/151 (34%), Gaps = 18/151 (11%)

Query: 121 NLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
           N++ ++  T E    +       +      ++++DSV AL          G      + +
Sbjct: 2   NIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAERQQ 57

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRR 235
            ++Q   +LT         +   NQ+    G       P+   GG+ L   +++RL +R+
Sbjct: 58  KLAQMXSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLRK 117

Query: 236 VGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
                      G Q   K+         + V
Sbjct: 118 GK---------GEQRVCKIFDAPNLPEGEAV 139


>gi|116199387|ref|XP_001225505.1| hypothetical protein CHGG_07849 [Chaetomium globosum CBS 148.51]
 gi|88179128|gb|EAQ86596.1| hypothetical protein CHGG_07849 [Chaetomium globosum CBS 148.51]
          Length = 476

 Score = 42.5 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           + +S+    LD ALG GG P G + E+ G   +GKT  
Sbjct: 125 QTISTLDPDLDRALG-GGIPAGYVTEVTGESGAGKTQF 161


>gi|268317889|ref|YP_003291608.1| DNA repair protein RadA [Rhodothermus marinus DSM 4252]
 gi|262335423|gb|ACY49220.1| DNA repair protein RadA [Rhodothermus marinus DSM 4252]
          Length = 453

 Score = 42.1 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 7/136 (5%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   LD  LG GG   G ++ + G    GK+TL                  +       
Sbjct: 74  TGVAELDRVLG-GGIVPGSLILLAGDPGIGKSTLMTELARYLPDRRVLYVTGEESVRQVR 132

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           + AR+LGV+  NLL+      E  LE    +      D++V+DS+  +  R E+E   G 
Sbjct: 133 LRARRLGVEGDNLLLLAETNLEAILEAARRVAP----DVLVVDSIQTVY-RPELESAPGS 187

Query: 170 -SLPGMQARLMSQALR 184
            S     A L+    +
Sbjct: 188 VSQVRESAALLMHYAK 203


>gi|288802277|ref|ZP_06407717.1| DNA repair protein RadA [Prevotella melaninogenica D18]
 gi|288335244|gb|EFC73679.1| DNA repair protein RadA [Prevotella melaninogenica D18]
          Length = 466

 Score = 42.1 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 58/179 (32%), Gaps = 17/179 (9%)

Query: 30  GAIMQLGSQGSIFEGI-----EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           G++  L ++      I       +      L+  LG GG   G IV + G    GK+TL 
Sbjct: 61  GSVSALANKPQRLRDISSHDDPRIDMHDGELNRVLG-GGLVPGSIVLLGGEPGIGKSTLT 119

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L TI    +         +          +     K++  +     E +LE     +R  
Sbjct: 120 LQTILHMTQR----VLYVSGEESPHQIKMRAERISKDIAENIIILSETSLEHIFEHIRDV 175

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             +++VIDS+  ++           +     A         L      S   ++ I  +
Sbjct: 176 QPELVVIDSIQTISTEDVDSSPGNITQVRECASA-------LLRFAKTSGVPVILIGHI 227


>gi|319790254|ref|YP_004151887.1| putative circadian clock protein, KaiC [Thermovibrio ammonificans
           HB-1]
 gi|317114756|gb|ADU97246.1| putative circadian clock protein, KaiC [Thermovibrio ammonificans
           HB-1]
          Length = 295

 Score = 42.1 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 59/184 (32%), Gaps = 33/184 (17%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIAL-------------GIGGFPKGRIVEIYGP 75
           K  I  LG        ++ V +G  GLD                 +GG P+  +V + G 
Sbjct: 14  KDYIYVLGEAVKKAPKLKGVPTGVKGLDDLFFKVEIEEGKPVRKPLGGIPEYAVVNLTGM 73

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD------SIYARKLGVDLKNLLISQP-- 127
             +GK+ +A     +    G    FV  E   +         A  +GV+ + +  +    
Sbjct: 74  PDTGKSLMAEQFTIKQASMGQKVCFVTVESPANFVAAGLKERAAAMGVNFEEIEDNIILI 133

Query: 128 ---------DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
                    D     L+    + R+      VIDS+  L    E    +  S+       
Sbjct: 134 DAASNSRLRDDIPTMLDTLAYVYRTYKCHRTVIDSITGLYEAKE---MLARSIVRAFFNF 190

Query: 179 MSQA 182
           M + 
Sbjct: 191 MKKW 194


>gi|115378567|ref|ZP_01465722.1| KaiC domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|310820748|ref|YP_003953106.1| hypothetical protein STAUR_3489 [Stigmatella aurantiaca DW4/3-1]
 gi|115364439|gb|EAU63519.1| KaiC domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|309393820|gb|ADO71279.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 532

 Score = 42.1 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 47/146 (32%), Gaps = 16/146 (10%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           Q    E    +S G  GLD ++  GG   G    + G   +GKT L LH + Q  + G  
Sbjct: 247 QEDGREDRIRMSFGIPGLDASI-HGGLLSGSTTMLLGSPGTGKTLLGLHFLVQGAREGQP 305

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE---------------ITDMLVR 142
             +         +  +  GV L +L         +                  +  +  R
Sbjct: 306 GVYFGFYETPPRLIEKAAGVGLPDLKKYVDSGVIELQWQPPLEHNLDSLAERLLERIHER 365

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMG 168
                 + IDSVA     A     MG
Sbjct: 366 KVKRLRLFIDSVAGFRSAAVYPERMG 391


>gi|33860693|ref|NP_892254.1| DNA repair protein RadA [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|33633635|emb|CAE18592.1| putative DNA repair protein RadA [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 450

 Score = 42.1 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 82/227 (36%), Gaps = 27/227 (11%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I   +SG    D  LG GG   G IV + G    GK+T+ L +  +         ++ A
Sbjct: 63  NISRFTSGFKEFDRVLG-GGIVPGSIVLLGGEPGIGKSTIVLQSAGKI-SLNEKVLYITA 120

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E +L+ +  R   ++  +L        E  L +    ++       +IDS+ A+      
Sbjct: 121 EESLEQVKIRWERLNQSSL--DLKIYAETNLSLIIEEIKKIKPGFAIIDSIQAIN----- 173

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
             +M  S   +      +       ++++   I + I     K G +        G   L
Sbjct: 174 NDEMESSPGSVSQ---VRTCSSELQNLAKENNIALLIIGHVTKDGAL-------AGPKTL 223

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           +    V L+         +     +   ++ VKN+  S F+   F++
Sbjct: 224 EHLVDVVLNF--------EGDNIASHRLLRSVKNRFGSTFEIGIFEM 262


>gi|166077967|gb|ABY81053.1| disrupted meiotic cDNA 1 protein [Elymus canadensis]
          Length = 138

 Score = 42.1 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 52/150 (34%), Gaps = 18/150 (12%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N++ ++  T E    +       +      ++++DSV  L          G      + 
Sbjct: 1   DNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIVLFR----VDFSGRGELAERQ 56

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR 234
           + ++Q L +LT         +   NQ+ +  G       P+   GG+ L   +++RL +R
Sbjct: 57  QKLAQMLSRLTKIAEEFNVAVYITNQVIVDPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           +           G Q   K+         +
Sbjct: 117 KGK---------GEQRVCKIFDAPNLPEGE 137


>gi|154486787|ref|ZP_02028194.1| hypothetical protein BIFADO_00613 [Bifidobacterium adolescentis
           L2-32]
 gi|154084650|gb|EDN83695.1| hypothetical protein BIFADO_00613 [Bifidobacterium adolescentis
           L2-32]
          Length = 472

 Score = 42.1 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 49/150 (32%), Gaps = 9/150 (6%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT------IAQSQKTGG 96
           E I  +++G    D  LG GG   G +  I G    GK+TL L T      +        
Sbjct: 75  EDISRIATGFSEFDRVLG-GGIVPGSVTLIAGEPGIGKSTLLLETAGNVARLTAFATERN 133

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
           T  ++  E +   +  R     +  +  +        L     L+      + ++DS   
Sbjct: 134 TVLYISGEESQAQVRMRA--SRIGAMEPNLLLASTTDLSTVLGLIEQFKPALAIVDSAQT 191

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           +  +       G +     A  +    + L
Sbjct: 192 IVSQDVDGISGGSTQVREVASALIDTAKTL 221


>gi|291549011|emb|CBL25273.1| hypothetical protein RTO_05210 [Ruminococcus torques L2-14]
          Length = 623

 Score = 42.1 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 79/232 (34%), Gaps = 15/232 (6%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKLGVDLKN 121
            P G++  I G    GKT  A+   A              E    +       LG  +K 
Sbjct: 326 IPFGKLTIIQGNPGEGKTYFAMRLAAACTNRKPLPGMETLEPFNIIYQTAEDGLGDTVKP 385

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD----MGESLPGMQAR 177
            LI      E+ L I D  +     D  +  ++     R  I       +G  +   +A 
Sbjct: 386 RLIEADADLERVLVIDDRDIPLTLADERIARAIRENNARLVIIDPVQAFLGADVDMNRAN 445

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
            +    R L      ++C +V I      +    G+  T  G  ++   ++VR  +  +G
Sbjct: 446 EVRPIFRSLGDIAQATRCAIVLI----GHLNKATGAQSTYRGLGSIDITAAVRSLLF-IG 500

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
            +KD  +       +   K+ +A P + + F +   +G  + G       + 
Sbjct: 501 KLKDSPTT----RVLIHEKSSLAPPGQSLAFSLGDEKGFEWIGAYDITADEL 548


>gi|159186487|ref|NP_396023.2| hypothetical protein Atu5086 [Agrobacterium tumefaciens str. C58]
 gi|159141547|gb|AAK90464.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 480

 Score = 42.1 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 64/328 (19%), Positives = 109/328 (33%), Gaps = 50/328 (15%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
            V ++G  GLD  L  GG P   +  + G   SGKTT AL  +      G +C +V    
Sbjct: 8   SVATTGIAGLDEIL-RGGLPASNLYILQGAPGSGKTTAALQFLRAGVAAGESCIYVTLSQ 66

Query: 106 ALDSIYARKL--GVDLKNLLISQPDTGEQALEITDMLVRSGAVDII------VIDSVAAL 157
               + A  +  G  L  + I +  T     E  D  +   +   +      +  ++   
Sbjct: 67  TAAELKAIAVSHGWTLDGIRIEELATSGSVNEADDQSIFMTSDLRLDETRKAIEAAIEEH 126

Query: 158 TPRAEIEGDMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPET 216
            PR  +   + E  L    +    + L    + +++   + + ++             E 
Sbjct: 127 KPRRLVYDSLLEIRLITGDSPRFRRELIAFKAFLAKQDVVALLLDTQSSDFDRSGEEMEG 186

Query: 217 TTGGNA-----LKFYSSVR----LDIRRVGSIKDKDSITGNQTRVKVVKNKMASP----- 262
              G       L+ Y  VR    +   R   I D       +    VV      P     
Sbjct: 187 LAHGVIRFDKSLEEYGGVRRRVEISKMRSVPIADGYHDMAIREGEGVVIFPRIMPSAASD 246

Query: 263 --------FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS-----FKGQRLGQG 309
                       E D M+G G        + G    ++ ++G   S     +    L +G
Sbjct: 247 TGKPQLIKSGVAELDEMFGGGQ-------EAGTTTLVIGQAGTGKSTMSSLYATAALERG 299

Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337
            EN  +FL E     E +E+  R++ GL
Sbjct: 300 -ENVALFLFE-----ERLETFFRRSEGL 321


>gi|13476691|ref|NP_108260.1| circadian clock gene kaiC [Mesorhizobium loti MAFF303099]
 gi|14027452|dbj|BAB53721.1| mlr8082 [Mesorhizobium loti MAFF303099]
          Length = 495

 Score = 42.1 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 47/135 (34%), Gaps = 23/135 (17%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           +    +SSG  GLD  L  GG+ K R   + G   SGKTTL L  + +    G  C ++ 
Sbjct: 4   DDASPISSGVEGLDYVL-RGGYAKYRSHLVEGRPGSGKTTLGLQFLIKGAAAGEKCLYIT 62

Query: 103 AEHA----------------------LDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
              +                      L           L+ L+ S      + ++     
Sbjct: 63  LSESRRELQSVAVRHGFSLDGIEILELVPPELSLDPSQLQTLVHSSDLELGETVQAALAE 122

Query: 141 VRSGAVDIIVIDSVA 155
           +     D +V DS++
Sbjct: 123 IERMKPDRVVFDSLS 137



 Score = 39.1 bits (89), Expect = 0.99,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 3/78 (3%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG--TCAFVDAEHAL 107
           +G+  +D  +G GG  +G    + GP   GK+T+A      + K G        D    +
Sbjct: 251 TGNGSVDTLVG-GGLDRGTSTLLMGPSGVGKSTIACSYCHSALKRGEHVLVLLFDETKRI 309

Query: 108 DSIYARKLGVDLKNLLIS 125
               A  LG+DL     +
Sbjct: 310 FLARASGLGMDLGPFADN 327


>gi|311694226|gb|ADP97099.1| uncharacterized conserved protein UCP037290 [marine bacterium HP15]
          Length = 229

 Score = 42.1 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 1/104 (0%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEI-YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           S+G   LD  LG  G+P+G + E        G+  L L  + +    G +  +++  H  
Sbjct: 29  STGYQVLDNQLGGLGWPRGALSECLLDAPGIGELHLLLPLMQRVCNEGKSVFWLNPPHTP 88

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
            +    + GV+L  +++   D    +L   +  +RS    +++ 
Sbjct: 89  YAPALAREGVNLDQVVLIHTDDEGDSLWTLENCLRSPVTGLVMA 132


>gi|295136344|ref|YP_003587020.1| DNA repair protein RadA [Zunongwangia profunda SM-A87]
 gi|294984359|gb|ADF54824.1| DNA repair protein RadA [Zunongwangia profunda SM-A87]
          Length = 456

 Score = 42.1 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 73/217 (33%), Gaps = 25/217 (11%)

Query: 34  QLGSQGSIFEGIEVVS-----SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           +  ++      IE        +G+  LD  LG GG   G +  + G    GK+TL L   
Sbjct: 57  KRAAKPLRLNEIETAPQYRWKTGNNELDRVLG-GGLVPGSLTLLGGEPGIGKSTLLLQIS 115

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
                      +V  E +   I  R   +D  +       T  +   I    +   + ++
Sbjct: 116 LSFPYK---VLYVSGEESQQQIKMRAERIDPNSTNC-YILTETKTQNIFRQ-IEEVSPEV 170

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM--- 205
           ++IDS+  L        D  ES PG  ++ + +   +L      S   ++ I  +     
Sbjct: 171 VIIDSIQTLHS------DYIESAPGSISQ-IRETTSELIKFAKESNVPVILIGHITKEGS 223

Query: 206 ----KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
               K+            G+    Y  +R    R GS
Sbjct: 224 IAGPKVLEHMVDTVLQFEGDRNHVYRILRSHKNRFGS 260


>gi|160943745|ref|ZP_02090976.1| hypothetical protein FAEPRAM212_01240 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444919|gb|EDP21922.1| hypothetical protein FAEPRAM212_01240 [Faecalibacterium prausnitzii
           M21/2]
          Length = 633

 Score = 42.1 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 76/232 (32%), Gaps = 15/232 (6%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF--VDAEHALDSIYARKLGVDLKN 121
            P G++  + G    GKTT AL   A     G       +     +       LG  +K 
Sbjct: 329 IPFGKVTIVQGNPGEGKTTFALRLAAACTTGGTLPGMKPLSPFQVIYQTAEDGLGDTVKP 388

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD----MGESLPGMQAR 177
            LI      ++ L I +        D  +  ++     R  I       MGE     +A 
Sbjct: 389 RLIEAAADLDRVLVIDEAKRELTLSDERIEKAITQNGARLIILDPIQAYMGEKTDMNRAN 448

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
            +    R+L     R+ C ++ I    +       S     G    +  +   L I R  
Sbjct: 449 EVRPMFRRLADVAERTGCAVILI--GHLNKAAGGQSAYRGLGSIDFRAAARSVLLIGR-- 504

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
            +K + ++      +   K+ +A   K V F +    G S+ GE      + 
Sbjct: 505 -VKREPNV----RVIVHDKSSLAPEGKPVAFCLDPETGFSWIGEYDITADEL 551


>gi|319787776|ref|YP_004147251.1| circadian clock protein, KaiC [Pseudoxanthomonas suwonensis 11-1]
 gi|317466288|gb|ADV28020.1| putative circadian clock protein, KaiC [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 503

 Score = 42.1 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 6/105 (5%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           MQ GS  S       +S+G+ GLD  LG GG    R+    G   +GKTTLAL  + +  
Sbjct: 1   MQDGSGRSTGT---RISTGNPGLDDILG-GGLDPYRLYLYEGRPGAGKTTLALEFLLEGA 56

Query: 93  KTGGTCAFVDAEHALDSIY--ARKLGVDLKNLLISQPDTGEQALE 135
             G    ++    +   +   A + G DL  + + +    E  LE
Sbjct: 57  SRGERVLYITLSESQRELELVAERHGWDLSGVDVVEMVPSEAMLE 101



 Score = 42.1 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF--VDA 103
           +   SG+  LD  LG GG  +G    + G    GK++L+L  I  +   G   A    D 
Sbjct: 252 DYTPSGNAALDQMLG-GGLERGTNALLIGAAGVGKSSLSLTYIMAAAARGERVALFAFDE 310

Query: 104 EHALDSIYARKLGVDLKNLLIS 125
                   +R LG+DL+  + S
Sbjct: 311 GRGTVVARSRALGMDLEAAMAS 332


>gi|307726919|ref|YP_003910132.1| Non-specific serine/threonine protein kinase [Burkholderia sp.
           CCGE1003]
 gi|307587444|gb|ADN60841.1| Non-specific serine/threonine protein kinase [Burkholderia sp.
           CCGE1003]
          Length = 488

 Score = 42.1 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            VS G   LD   G GG   G    + GP   GKT L L  +A   + G  C ++
Sbjct: 245 RVSFGLPRLDAMFG-GGLSLGSTTTMIGPSGVGKTLLCLQFLAAGIERGERCLYL 298


>gi|162146932|ref|YP_001601393.1| DNA repair protein RadA [Gluconacetobacter diazotrophicus PAl 5]
 gi|209543996|ref|YP_002276225.1| DNA repair protein RadA [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785509|emb|CAP55080.1| putative DNA repair protein [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209531673|gb|ACI51610.1| DNA repair protein RadA [Gluconacetobacter diazotrophicus PAl 5]
          Length = 469

 Score = 42.1 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 61/159 (38%), Gaps = 6/159 (3%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           +GA +   S   + E    V +    LD  LG GG     +V + G    GK+TL L   
Sbjct: 53  RGAAIDFVSLDGVAEPPPRVGTRIAELDRVLG-GGLVPASVVLVGGDPGIGKSTLLLQAA 111

Query: 89  AQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
                 G    ++  E A+D I   AR+LG+D   L ++         +I   L     V
Sbjct: 112 CALANGGRRVMYISGEEAVDQIRLRARRLGLDAPGLHVAAAINVT---DIAGTLEAERDV 168

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
            +++IDS+  +            S     A  + +  ++
Sbjct: 169 ALVIIDSIQTMWLETVESAPGTVSQVRATAFELIRLAKQ 207


>gi|118431483|ref|NP_147985.2| hypothetical protein APE_1505.1 [Aeropyrum pernix K1]
 gi|150421711|sp|Q9YBU4|Y1505_AERPE RecName: Full=UPF0273 protein APE_1505.1
 gi|116062808|dbj|BAA80504.2| conserved hypothetical protein [Aeropyrum pernix K1]
          Length = 248

 Score = 42.1 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 3/80 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++ V +G  G+D  L  GG P+  +V + G   +GK+  +   +    + G    FV  E
Sbjct: 2   VDRVKTGIPGMDDIL-YGGIPRRNVVLLSGGPGTGKSIFSYQYLWNGLREGEPGVFVALE 60

Query: 105 --HALDSIYARKLGVDLKNL 122
                  I   + G D++  
Sbjct: 61  EHPVQVRINMAQFGWDVREY 80


>gi|52695724|pdb|1TF7|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic
 gi|52695725|pdb|1TF7|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic
 gi|52695726|pdb|1TF7|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic
 gi|52695727|pdb|1TF7|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic
 gi|52695728|pdb|1TF7|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic
 gi|52695729|pdb|1TF7|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic
          Length = 525

 Score = 42.1 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 72/219 (32%), Gaps = 33/219 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG + LD   G GGF K  I+   G   +GKT L    +  + 
Sbjct: 252 MRLTQRSSNV----RVSSGVVRLDEMCG-GGFFKDSIILATGATGTGKTLLVSRFVENAC 306

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
                      E +   +        +            ++ + P++   E  L+I    
Sbjct: 307 ANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSE 366

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +   +F 
Sbjct: 367 INDFKPARIAIDSLSALA-------------RGVSNNAFRQFVIGVTGYAKQEEITGLFT 413

Query: 201 N---QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           N   Q      +      T T    L  Y  +R ++ R 
Sbjct: 414 NTSDQFMGAHSITDSHISTITDTIILLQYVEIRGEMSRA 452


>gi|56750343|ref|YP_171044.1| circadian clock protein KaiC [Synechococcus elongatus PCC 6301]
 gi|81300025|ref|YP_400233.1| circadian clock protein KaiC [Synechococcus elongatus PCC 7942]
 gi|54036122|sp|Q79PF4|KAIC_SYNE7 RecName: Full=Circadian clock protein kinase kaiC
 gi|4156230|dbj|BAA37103.1| KaiC [Synechococcus elongatus PCC 7942]
 gi|22002535|gb|AAM82686.1| KaiC [Synechococcus elongatus PCC 7942]
 gi|56685302|dbj|BAD78524.1| circadian clock protein KaiC [Synechococcus elongatus PCC 6301]
 gi|81168906|gb|ABB57246.1| circadian clock protein KaiC [Synechococcus elongatus PCC 7942]
          Length = 519

 Score = 42.1 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 72/219 (32%), Gaps = 33/219 (15%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG + LD   G GGF K  I+   G   +GKT L    +  + 
Sbjct: 252 MRLTQRSSNV----RVSSGVVRLDEMCG-GGFFKDSIILATGATGTGKTLLVSRFVENAC 306

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
                      E +   +        +            ++ + P++   E  L+I    
Sbjct: 307 ANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSE 366

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +   +F 
Sbjct: 367 INDFKPARIAIDSLSALA-------------RGVSNNAFRQFVIGVTGYAKQEEITGLFT 413

Query: 201 N---QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           N   Q      +      T T    L  Y  +R ++ R 
Sbjct: 414 NTSDQFMGAHSITDSHISTITDTIILLQYVEIRGEMSRA 452


>gi|13488520|ref|NP_109527.1| circadian oscillation regulator KaiC-like protein [Mesorhizobium
           loti MAFF303099]
 gi|14028274|dbj|BAB54866.1| circadian oscillation regulator KaiC homolog [Mesorhizobium loti
           MAFF303099]
          Length = 509

 Score = 42.1 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 47/135 (34%), Gaps = 23/135 (17%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           +    +SSG  GLD  L  GG+ K R   + G   SGKTTL L  + +    G  C ++ 
Sbjct: 18  DDASPISSGVEGLDYVL-RGGYAKFRSHLVEGRPGSGKTTLGLQFLIKGAAAGEKCLYIT 76

Query: 103 AEHA----------------------LDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140
              +                      L           L+ L+ S      + ++     
Sbjct: 77  LSESKRELHSVAERHGFSLDGIEILELVPPELSLDPSQLQTLVHSSDLELGETVQSALAE 136

Query: 141 VRSGAVDIIVIDSVA 155
           +     D +V DS++
Sbjct: 137 IERMKPDRVVFDSLS 151



 Score = 39.4 bits (90), Expect = 0.94,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG--TCAFVDAEHAL 107
           +G+  +D  +G GG  +G    + GP   GK+T+A      +   G        D    +
Sbjct: 265 TGNGSVDTLVG-GGLDRGTSTLLMGPSGVGKSTIACSYCHAALNRGEHVLVLLFDETRRI 323

Query: 108 DSIYARKLGVDLKNLLIS 125
               A  LG+DL     +
Sbjct: 324 FLARASGLGMDLGPFADN 341


>gi|330962395|gb|EGH62655.1| hypothetical protein PMA4326_27952 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 207

 Score = 42.1 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 11/137 (8%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI-Y 73
           +L+A L   +R   KG       +  I   +    SG   LD AL  GG+P   + EI  
Sbjct: 7   SLDALLD--ERRVWKG-------RQQIAPPVSPHPSGHTALDSALPTGGWPASALTEILI 57

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
               SG+  L   ++A+    G     V   +          GVDL+ L++ +  +   A
Sbjct: 58  PANGSGELRLLWPSLARLSGIGERIVLVAPPYIPYPQAWLAAGVDLRQLVVIEA-SARDA 116

Query: 134 LEITDMLVRSGAVDIIV 150
           L   +  +RSG+   +V
Sbjct: 117 LWAAEQCLRSGSCGAVV 133


>gi|313140904|ref|ZP_07803097.1| DNA repair protein RadA [Bifidobacterium bifidum NCIMB 41171]
 gi|313133414|gb|EFR51031.1| DNA repair protein RadA [Bifidobacterium bifidum NCIMB 41171]
          Length = 475

 Score = 42.1 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 43/142 (30%), Gaps = 1/142 (0%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
             +S+G    D  LG GG   G +V I G    GK+TL L T           + +    
Sbjct: 88  SRLSTGFGEFDRVLG-GGIVPGSVVLIAGEPGIGKSTLLLETAGNIAAGQPNGSVLYVSG 146

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
                  R     +  +  +        L     L+      + ++DS   +  +     
Sbjct: 147 EESQAQVRLRASRVNAMEQNLLLASTTDLATVLGLIERTRPTLAIVDSAQTIVSQDVDGI 206

Query: 166 DMGESLPGMQARLMSQALRKLT 187
             G +     A  +    + L 
Sbjct: 207 SGGSTQVREVASALIDTAKTLN 228


>gi|268318910|ref|YP_003292566.1| DNA repair protein radA [Lactobacillus johnsonii FI9785]
 gi|262397285|emb|CAX66299.1| DNA repair protein radA [Lactobacillus johnsonii FI9785]
          Length = 459

 Score = 42.1 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 54/156 (34%), Gaps = 7/156 (4%)

Query: 3   YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
           + +E   + K  A   A   I +  G    ++L    +  E    + +    L+  LG G
Sbjct: 33  FEEETQEIKKVSAKATASRLITK-IGNNDPVKLTEVKAEKEK--RIVTPFEELNRVLG-G 88

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G   G +V I G    GK+TL L       K          E A              + 
Sbjct: 89  GIVPGSLVLIGGDPGIGKSTLMLQITGALAKEYSVLYVSGEESASQIKMRADRLGVSDSG 148

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           ++  P+T  Q +      +     D +VIDS+  + 
Sbjct: 149 ILLYPETNMQNIR---DQIDEIKPDFLVIDSIQTMN 181


>gi|224283748|ref|ZP_03647070.1| DNA repair protein RadA [Bifidobacterium bifidum NCIMB 41171]
 gi|311064858|ref|YP_003971584.1| DNA repair protein RadA [Bifidobacterium bifidum PRL2010]
 gi|310867178|gb|ADP36547.1| RadA DNA repair protein [Bifidobacterium bifidum PRL2010]
          Length = 466

 Score = 42.1 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 43/142 (30%), Gaps = 1/142 (0%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
             +S+G    D  LG GG   G +V I G    GK+TL L T           + +    
Sbjct: 79  SRLSTGFGEFDRVLG-GGIVPGSVVLIAGEPGIGKSTLLLETAGNIAAGQPNGSVLYVSG 137

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
                  R     +  +  +        L     L+      + ++DS   +  +     
Sbjct: 138 EESQAQVRLRASRVNAMEQNLLLASTTDLATVLGLIERTRPTLAIVDSAQTIVSQDVDGI 197

Query: 166 DMGESLPGMQARLMSQALRKLT 187
             G +     A  +    + L 
Sbjct: 198 SGGSTQVREVASALIDTAKTLN 219


>gi|126695490|ref|YP_001090376.1| DNA repair protein RadA [Prochlorococcus marinus str. MIT 9301]
 gi|126542533|gb|ABO16775.1| putative DNA repair protein RadA [Prochlorococcus marinus str. MIT
           9301]
          Length = 450

 Score = 42.1 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 85/236 (36%), Gaps = 32/236 (13%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + I   +SG +  D  LG GG   G +V + G    GK+T+ L +  +         ++ 
Sbjct: 62  KKISRFTSGFMEFDRVLG-GGIVPGSVVLLGGEPGIGKSTIVLQSAGKI-SLNEKVLYIT 119

Query: 103 AEHALDS--IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           AE +L+   I   +L  +  +L I         L +    ++    +  +IDS+ A+   
Sbjct: 120 AEESLEQVKIRWERLNQNSIDLKIFAETN----LSLIIEEIKRLNPNFAIIDSIQAIHNH 175

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
                    S     +  +         ++++   I + I     K G +        G 
Sbjct: 176 EMQSAPGSVSQVRACSSELQ--------NLAKENNIALLIIGHVTKDGAL-------AGP 220

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276
             L+      ++         +     +   ++ +KN+  S F+   F++   EG+
Sbjct: 221 KTLEHLVDTVINF--------EGDNISSHRLLRSIKNRFGSTFEIGIFEM-LDEGL 267


>gi|87301193|ref|ZP_01084034.1| circadian clock protein KaiC [Synechococcus sp. WH 5701]
 gi|87284161|gb|EAQ76114.1| circadian clock protein KaiC [Synechococcus sp. WH 5701]
          Length = 514

 Score = 42.1 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           ++ + +G  GLD     GG P GR   I G   +GKT  +LH +  
Sbjct: 13 KLQKLPTGVEGLDDIC-QGGLPIGRSTLISGTSGTGKTVFSLHFLHN 58



 Score = 41.4 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 60/181 (33%), Gaps = 30/181 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           MQL  + S       +SSG L LD   G GGF K  I+   G   +GKT L    +  + 
Sbjct: 248 MQLTQRSSNV----RISSGVLRLDEMCG-GGFFKDSIILATGATGTGKTLLVSKFVEDAY 302

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
                      E +   +        +            ++ + P++   E  L+I    
Sbjct: 303 NNKERAILFAYEESRAQLLRNATSWGIDFEQMEQDGLLKIICAYPESTGLEDHLQIIKTE 362

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       + IDS++AL          G S          Q +  +T    + +    F 
Sbjct: 363 IAQFKPARMAIDSLSAL--------SRGVSH-----NAFRQFVIGVTGYAKQEEIAGFFT 409

Query: 201 N 201
           N
Sbjct: 410 N 410


>gi|170751305|ref|YP_001757565.1| ABC transporter related [Methylobacterium radiotolerans JCM 2831]
 gi|170657827|gb|ACB26882.1| ABC transporter related [Methylobacterium radiotolerans JCM 2831]
          Length = 253

 Score = 42.1 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 24/91 (26%)

Query: 19  ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           ALS I++ +G   +++                   G+D+A      P+GR+  + GP  S
Sbjct: 3   ALSAIEKRFGDNPVLR-------------------GVDLA-----VPEGRVTALIGPSGS 38

Query: 79  GKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           GK+TL            GT    D       
Sbjct: 39  GKSTLLRCVNLLEVPQAGTLTLGDVRLTFRP 69


>gi|254526490|ref|ZP_05138542.1| circadian clock protein KaiC [Prochlorococcus marinus str. MIT
           9202]
 gi|221537914|gb|EEE40367.1| circadian clock protein KaiC [Prochlorococcus marinus str. MIT
           9202]
          Length = 512

 Score = 42.1 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 35/106 (33%), Gaps = 14/106 (13%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
              +GK   MQ          ++ + +G  G D     GG P  R   + G   +GKT  
Sbjct: 3   DNKFGKSNKMQ----------VQKLPTGIEGFDDVC-RGGLPVSRSTLVSGTSGTGKTVF 51

Query: 84  A---LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           +   LH    +    G     +         A   G DL+ L+   
Sbjct: 52  SLQYLHHGICNFDEPGIFVTFEESPLDIIRNAASFGWDLQELIDQN 97



 Score = 41.8 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 59/185 (31%), Gaps = 30/185 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       +SSG   LD   G GG+ +  I+   G   +GKT L    +  + 
Sbjct: 248 MRLTQRSSNI----RISSGVKDLDDMCG-GGYFQDSIILATGATGTGKTMLVSKFVEDAY 302

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
                      E +   +        +            ++ + P++   E  L+I    
Sbjct: 303 NNNERAILFAYEESRAQLLRNATSWGIDFEKMESDGLLKIICAYPESTGLEDHLQIIKTQ 362

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       + IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 363 ITQFKPKRMAIDSLSALA-------------RGVSLNAFRQFVIAVTGYTKQEEIAGFFT 409

Query: 201 NQMRM 205
           N    
Sbjct: 410 NTAEE 414


>gi|312794242|ref|YP_004027165.1| DnaB domain-containing protein helicase domain-containing protein
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181382|gb|ADQ41552.1| DnaB domain protein helicase domain protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 431

 Score = 42.1 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 14/99 (14%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
            +  +D  K L A    I+++Y  G              I  V +G   LD    I G  
Sbjct: 132 NVTSLDMDKLLVAYYDHIEKLYMSG------------GRIAGVPTGYPKLDEL--INGLQ 177

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           KG +  +    S GKTTLA++    + + G +  ++D E
Sbjct: 178 KGTMTVLAARPSMGKTTLAVNIATNAIRDGYSVLYIDTE 216


>gi|184201556|ref|YP_001855763.1| DNA repair protein RadA [Kocuria rhizophila DC2201]
 gi|183581786|dbj|BAG30257.1| DNA repair protein RadA [Kocuria rhizophila DC2201]
          Length = 472

 Score = 42.1 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 53/146 (36%), Gaps = 12/146 (8%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +    LD  LG GG   G ++ + G    GK+TL L   A+  +   T    D      
Sbjct: 74  PTNVPELDRVLG-GGLVPGAVILLAGEPGVGKSTLLLDAAAKVARGPATTPGADDGAPRT 132

Query: 109 SIYARK---------LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
            +Y                +  L  +   T E  L +    V +   D++V+DSV  L  
Sbjct: 133 VLYVTGEESAAQVKLRAERIDALSDTLYLTAETDLSVALAQVAALDPDLLVVDSVQTLAS 192

Query: 160 RAEIEGDMGE-SLPGMQARLMSQALR 184
             EIEG  G  S     A  +  A +
Sbjct: 193 -PEIEGSAGGVSQVREVAASLIHAAK 217


>gi|11141583|gb|AAG32011.1|AF277254_1 disrupted meiotic cDNA 1 protein [Thinopyrum bessarabicum]
          Length = 138

 Score = 42.1 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 18/150 (12%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N++ ++  T E    +       +      ++++DSV AL          G      + 
Sbjct: 1   DNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAERQ 56

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR 234
           + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +R
Sbjct: 57  QKLAQMLSRLTKIXEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           +           G Q   K+         +
Sbjct: 117 KGK---------GEQRVCKIFDAPNLPEGE 137


>gi|89070749|ref|ZP_01158007.1| hypothetical protein OG2516_14276 [Oceanicola granulosus HTCC2516]
 gi|89043648|gb|EAR49854.1| hypothetical protein OG2516_14276 [Oceanicola granulosus HTCC2516]
          Length = 504

 Score = 42.1 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 3/82 (3%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF--VDA 103
           E V++G   LD  LG GG   G    + GP   GKTT  +  +  + + G   A+   D 
Sbjct: 250 EAVTTGLPRLDKLLG-GGLVPGTNALLTGPAGVGKTTTVVRAVLAALERGERAAYFLFDE 308

Query: 104 EHALDSIYARKLGVDLKNLLIS 125
             A     +R LG+DL+  + S
Sbjct: 309 RLATLIARSRALGMDLEPYIES 330


>gi|324997775|ref|ZP_08118887.1| DNA repair protein RadA [Pseudonocardia sp. P1]
          Length = 443

 Score = 42.1 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 51/142 (35%), Gaps = 5/142 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +G   LD  LG GG   G +V + G    GK+TL L   AQ+        +V  E +  
Sbjct: 61  PTGVEELDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLEVAAQAAAR-SRVLYVSGEESAG 118

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +  R        +        E  LE     V      ++V+DS+  ++  A ++G  G
Sbjct: 119 QVRLRA--ERTGGVHDELYLAAESDLESVLGHVDQLKPSLLVVDSIQTMST-ASVDGTPG 175

Query: 169 ESLPGMQARLMSQALRKLTSSI 190
                    +   AL K     
Sbjct: 176 GVTQTRAVTVGLTALAKERGLA 197


>gi|154508560|ref|ZP_02044202.1| hypothetical protein ACTODO_01061 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798194|gb|EDN80614.1| hypothetical protein ACTODO_01061 [Actinomyces odontolyticus ATCC
           17982]
          Length = 488

 Score = 42.1 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 56/140 (40%), Gaps = 4/140 (2%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G ++ + G    GK+TL L   A++ +T          +   
Sbjct: 96  STGVSELDRVLG-GGIVPGAVILLAGEPGVGKSTLLLDVAAKAARTAAAGGRGPVLYVTG 154

Query: 109 SIYARKLGVDLKNLLISQPD---TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
              A ++    + +   +P+     E  L +    + +    ++++DSV  ++      G
Sbjct: 155 EESAAQVRGRAERIGALEPNLLIADETELGVILGHIEASHPSLLIVDSVQTISSAQVEGG 214

Query: 166 DMGESLPGMQARLMSQALRK 185
             G +     A  + +  ++
Sbjct: 215 AGGVAQVRAVAASLIRVAKE 234


>gi|167034545|ref|YP_001669776.1| non-specific serine/threonine protein kinase [Pseudomonas putida
           GB-1]
 gi|166861033|gb|ABY99440.1| Non-specific serine/threonine protein kinase [Pseudomonas putida
           GB-1]
          Length = 481

 Score = 42.1 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI--AQSQKTGGTCAFVDAE 104
            +SSG    D  LG GG   G +  + GP   GKT+L L  +  +  Q  G    F +  
Sbjct: 242 RISSGVPTFDEMLG-GGLATGSVSLLIGPSGIGKTSLGLAFLGASTPQAPGLHFGFYETP 300

Query: 105 HALD 108
             L 
Sbjct: 301 ERLR 304



 Score = 39.4 bits (90), Expect = 0.79,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 27/77 (35%), Gaps = 1/77 (1%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + + +  + +G  GLD  L  GG   G    I GP  +GKT LA        + GG    
Sbjct: 1   MAQALRRLVTGIDGLDALL-KGGLVAGASYIIQGPPGAGKTILANQLACGHVRGGGRVLV 59

Query: 101 VDAEHALDSIYARKLGV 117
                       + L  
Sbjct: 60  ATLLSESHERLFQYLST 76


>gi|261880514|ref|ZP_06006941.1| DNA repair protein RadA [Prevotella bergensis DSM 17361]
 gi|270332736|gb|EFA43522.1| DNA repair protein RadA [Prevotella bergensis DSM 17361]
          Length = 469

 Score = 42.1 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 51/142 (35%), Gaps = 4/142 (2%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           +    + +     +  LG GG   G I+ + G    GK+TL L TI    +      +V 
Sbjct: 80  KDEPRIDTHDAEFNRVLG-GGIVPGSIILLGGEPGIGKSTLTLQTILSMTER--RILYVS 136

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E +   I  R   ++  N           +LE     ++    ++++IDSV  ++    
Sbjct: 137 GEESAHQIKMRAERLNPVNPESIFVLCET-SLENIFGHIQEVMPELLIIDSVQTISTETV 195

Query: 163 IEGDMGESLPGMQARLMSQALR 184
                  +     A  + +  +
Sbjct: 196 DSSPGSVTQVRECASALLRFAK 217


>gi|289580973|ref|YP_003479439.1| circadian clock protein, KaiC [Natrialba magadii ATCC 43099]
 gi|289530526|gb|ADD04877.1| putative circadian clock protein, KaiC [Natrialba magadii ATCC
           43099]
          Length = 492

 Score = 42.1 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 61/167 (36%), Gaps = 24/167 (14%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL--D 108
           G  GLD  +G GGF K  +  I GP  +GKT+     +AQ+ K G   A    E  +   
Sbjct: 248 GIEGLDELVG-GGFDKRTVTFISGPTGAGKTSTGTQFLAQAAKNGMKSAVYLFEEDMETY 306

Query: 109 SIYARKLGVDLKNLLIS----------QPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
              +  +G+ +  +             +  +GE+   +    V     DI++ID +   T
Sbjct: 307 EHRSEAIGMPVTTMREEGTLSITEIEPRTLSGEEFAHMVKQEVDERETDIVMIDGLDGYT 366

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
                              ++ + L  LT  +      ++  N++  
Sbjct: 367 T-----------SIQGNEDMLVRKLHALTRYLKNRGVTVLITNEISE 402



 Score = 37.5 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           VSSG  GLD  L  GGF  GR+  ++G   +GKT L +H + +      T  F+  E +
Sbjct: 8   VSSGVGGLDDIL-HGGFVPGRMYLVHGQPGTGKTLLGMHFLEEGLNDDETVLFIHGEES 65


>gi|126696866|ref|YP_001091752.1| circadian clock protein KaiC [Prochlorococcus marinus str. MIT
           9301]
 gi|126543909|gb|ABO18151.1| possible circadian clock protein KaiC [Prochlorococcus marinus str.
           MIT 9301]
          Length = 509

 Score = 42.1 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 35/106 (33%), Gaps = 14/106 (13%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
            +  GK   MQ          ++ + +G  G D     GG P  R   + G   +GKT  
Sbjct: 3   DKKIGKSNKMQ----------VQKLPTGIEGFDDVC-RGGLPVSRSTLVSGTSGTGKTVF 51

Query: 84  A---LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           +   LH    +    G     +         A   G DL+ L+   
Sbjct: 52  SLQYLHHGICNFDEPGIFVTFEESPLDIIRNAASFGWDLQELIDQN 97



 Score = 41.4 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 59/185 (31%), Gaps = 30/185 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       +SSG   LD   G GG+ +  I+   G   +GKT L    +  + 
Sbjct: 248 MRLTQRSSNI----RISSGVKDLDDMCG-GGYFQDSIILATGATGTGKTMLVSKFVEDAY 302

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
                      E +   +        +            ++ + P++   E  L+I    
Sbjct: 303 DNNERAILFAYEESRAQLLRNATSWGIDFEKMESDGLLKIICAYPESTGLEDHLQIIKTQ 362

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       + IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 363 INQFKPKRMAIDSLSALA-------------RGVSLNAFRQFVIAVTGYTKQEEIAGFFT 409

Query: 201 NQMRM 205
           N    
Sbjct: 410 NTAEE 414


>gi|194364923|ref|YP_002027533.1| DNA repair protein RadA [Stenotrophomonas maltophilia R551-3]
 gi|194347727|gb|ACF50850.1| DNA repair protein RadA [Stenotrophomonas maltophilia R551-3]
          Length = 458

 Score = 42.1 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 52/139 (37%), Gaps = 4/139 (2%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            VS+G    D  LG GG  +G +V + G    GK+TL L  +A+         +V  E +
Sbjct: 76  RVSTGIGEFDRVLG-GGLVEGAVVLVGGDPGIGKSTLLLQAVAKMAAV-LPVLYVTGEES 133

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           L  +  R     L+  L       E  +E        G   +IV DSV  L   +     
Sbjct: 134 LAQVAGRA--HRLELPLDGVNALAETGVESILQHASKGGPRLIVADSVQTLWTESLTAAP 191

Query: 167 MGESLPGMQARLMSQALRK 185
              S     A  + +  ++
Sbjct: 192 GSVSQVRESAARLVRFAKE 210


>gi|293191353|ref|ZP_06609178.1| DNA repair protein RadA [Actinomyces odontolyticus F0309]
 gi|292820577|gb|EFF79550.1| DNA repair protein RadA [Actinomyces odontolyticus F0309]
          Length = 396

 Score = 42.1 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 56/140 (40%), Gaps = 4/140 (2%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G ++ + G    GK+TL L   A++ +T          +   
Sbjct: 4   STGVSELDRVLG-GGIVPGAVILLAGEPGVGKSTLLLDVAAKAARTAAAGGRGPVLYVTG 62

Query: 109 SIYARKLGVDLKNLLISQPD---TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
              A ++    + +   +P+     E  L +    + +    ++++DSV  ++      G
Sbjct: 63  EESAAQVRGRAERIGALEPNLLIADETELGVILGHIEASHPSLLIVDSVQTISSAQVEGG 122

Query: 166 DMGESLPGMQARLMSQALRK 185
             G +     A  + +  ++
Sbjct: 123 AGGVAQVRAVAASLIRVAKE 142


>gi|254482450|ref|ZP_05095689.1| hypothetical protein GPB2148_919 [marine gamma proteobacterium
           HTCC2148]
 gi|214037141|gb|EEB77809.1| hypothetical protein GPB2148_919 [marine gamma proteobacterium
           HTCC2148]
          Length = 261

 Score = 42.1 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 1/132 (0%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE-SSGKTTLALHTIAQSQK 93
           L + G      + +S+G   LD  L   G+P G  VE+       G   L L  + +   
Sbjct: 34  LSANGDSHWDEDRLSTGYSTLDKELRSDGWPLGSTVEVLSDGCGLGSMGLFLPAMEKLSA 93

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            G    F+       +   +  G+D   +L+  P + E  L  T+  +RS     +    
Sbjct: 94  EGRWQVFIAPPFTPYAPLLKARGIDTDQILLVHPKSREDLLWATEQALRSTTSSAVFSWL 153

Query: 154 VAALTPRAEIEG 165
            A     +E+  
Sbjct: 154 GADEYSYSELRK 165


>gi|209882743|ref|XP_002142807.1| hypothetical protein [Cryptosporidium muris RN66]
 gi|209558413|gb|EEA08458.1| hypothetical protein, conserved [Cryptosporidium muris RN66]
          Length = 316

 Score = 42.1 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           +S+GS  +D  L  GG PKG + EI G   SGKT   L+   
Sbjct: 38 RLSTGSYNIDNILN-GGIPKGCLFEITGEAGSGKTQWCLNLAI 79


>gi|66360226|pdb|1U9I|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic With
           Phosphorylation Sites
 gi|66360227|pdb|1U9I|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic With
           Phosphorylation Sites
 gi|66360230|pdb|1U9I|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic With
           Phosphorylation Sites
 gi|66360231|pdb|1U9I|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic With
           Phosphorylation Sites
 gi|126030535|pdb|2GBL|A Chain A, Crystal Structure Of Full Length Circadian Clock Protein
           Kaic With Phosphorylation Sites
 gi|126030536|pdb|2GBL|B Chain B, Crystal Structure Of Full Length Circadian Clock Protein
           Kaic With Phosphorylation Sites
 gi|126030539|pdb|2GBL|E Chain E, Crystal Structure Of Full Length Circadian Clock Protein
           Kaic With Phosphorylation Sites
 gi|126030540|pdb|2GBL|F Chain F, Crystal Structure Of Full Length Circadian Clock Protein
           Kaic With Phosphorylation Sites
 gi|254839219|pdb|3DVL|A Chain A, Crystal Structure Of Full Length Circadian Clock Protein
           Kaic With Correct Geometry At Phosphorylation Sites
 gi|254839220|pdb|3DVL|B Chain B, Crystal Structure Of Full Length Circadian Clock Protein
           Kaic With Correct Geometry At Phosphorylation Sites
 gi|254839221|pdb|3DVL|C Chain C, Crystal Structure Of Full Length Circadian Clock Protein
           Kaic With Correct Geometry At Phosphorylation Sites
 gi|254839222|pdb|3DVL|D Chain D, Crystal Structure Of Full Length Circadian Clock Protein
           Kaic With Correct Geometry At Phosphorylation Sites
 gi|254839223|pdb|3DVL|E Chain E, Crystal Structure Of Full Length Circadian Clock Protein
           Kaic With Correct Geometry At Phosphorylation Sites
 gi|254839224|pdb|3DVL|F Chain F, Crystal Structure Of Full Length Circadian Clock Protein
           Kaic With Correct Geometry At Phosphorylation Sites
          Length = 519

 Score = 42.1 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 61/181 (33%), Gaps = 30/181 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG + LD   G GGF K  I+   G   +GKT L    +  + 
Sbjct: 252 MRLTQRSSNV----RVSSGVVRLDEMCG-GGFFKDSIILATGATGTGKTLLVSRFVENAC 306

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
                      E +   +        +            ++ + P++   E  L+I    
Sbjct: 307 ANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSE 366

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +   +F 
Sbjct: 367 INDFKPARIAIDSLSALA-------------RGVSNNAFRQFVIGVTGYAKQEEITGLFT 413

Query: 201 N 201
           N
Sbjct: 414 N 414


>gi|18978303|ref|NP_579660.1| hypothetical protein PF1931 [Pyrococcus furiosus DSM 3638]
 gi|34098607|sp|Q8TZQ5|Y1931_PYRFU RecName: Full=UPF0273 protein PF1931
 gi|18894129|gb|AAL82055.1| hypothetical protein PF1931 [Pyrococcus furiosus DSM 3638]
          Length = 247

 Score = 42.1 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 80/242 (33%), Gaps = 33/242 (13%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +  V +G  G+D  L  GG P+  +V + G   +GK+  +   +    + G    +V  E
Sbjct: 2   VRRVKTGIPGMDEIL-HGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 60

Query: 105 --HALDSIYARKLGVD------------LKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
                      + G D            +         + E    I   L        ++
Sbjct: 61  EHPVQVRQNMAQFGWDVRKYEEEGLFAMVDAFTAGVGKSKEYEKYIVHDLTDIREFIEVL 120

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
             ++  +  +  +   +        A   S  + +L   ++ + C  +F++Q+ +     
Sbjct: 121 RQAIRDINAKRVVVDSVTTLYINKPAMARS-IILQLKRVLAGTGCTSIFVSQISV----- 174

Query: 211 FGSPETTTGGNALKFYS--SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
               E   GG  ++      +RLD+       D+      ++ +       +   K+  F
Sbjct: 175 ---GERGFGGPGVEHGVDGIIRLDL-------DEIDGELKRSLIVWKMRGTSHSMKRHPF 224

Query: 269 DI 270
           DI
Sbjct: 225 DI 226


>gi|312135658|ref|YP_004002996.1| DnaB domain-containing protein helicase domain-containing protein
           [Caldicellulosiruptor owensensis OL]
 gi|311775709|gb|ADQ05196.1| DnaB domain protein helicase domain protein [Caldicellulosiruptor
           owensensis OL]
          Length = 607

 Score = 42.1 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 5/78 (6%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E    + +G   LD  L  GG   G +       S GKTT  L  I    +    C F+ 
Sbjct: 334 EKFATIPTGFKMLDDVLN-GGLIAGNLYVFGAKPSVGKTTFLLQLIDNFLQQDYECVFLS 392

Query: 103 A----EHALDSIYARKLG 116
           A    E  L  I+ R+ G
Sbjct: 393 AEMPKEEILTRIFCREYG 410


>gi|257437552|ref|ZP_05613307.1| toprim domain protein [Faecalibacterium prausnitzii A2-165]
 gi|257199859|gb|EEU98143.1| toprim domain protein [Faecalibacterium prausnitzii A2-165]
          Length = 625

 Score = 42.1 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 89/277 (32%), Gaps = 29/277 (10%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKLGVDLKN 121
            P G++  + G    GKTT AL   A     G             +       LG  +K 
Sbjct: 329 IPFGKVTIVQGNPGEGKTTFALRLAAACTTGGTLPGMKPLPPFQVIYQTAEDGLGDTVKP 388

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD----MGESLPGMQAR 177
            LI      ++ L I +        D  +  ++     R  I       MGE     +A 
Sbjct: 389 RLIEAEADLDRVLVIDEAKRELTLSDERIEKAITQNGARLIILDPIQAYMGEKTDMNRAN 448

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
            +    R+L     R+ C ++ I    +       S     G    +  +   L I R  
Sbjct: 449 EVRPMFRRLADVAERTGCAVILI--GHLNKAAGGQSAYRGLGSIDFRAAARSVLLIGR-- 504

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
            +K + ++      +   K+ +A   K V F +    G S+ GE      +      SGA
Sbjct: 505 -VKREPNV----RVIVHDKSSLAPEGKPVAFCLDPETGFSWIGEYDITADELL----SGA 555

Query: 298 WFSFKGQRLGQGRENSKI----FLRENIEIAEN-IES 329
                G       E ++      L +  E+A   IE 
Sbjct: 556 -----GGNTATKTEQAEKLILDLLADGKELASEDIEK 587


>gi|242399779|ref|YP_002995204.1| KaiC domain protein [Thermococcus sibiricus MM 739]
 gi|242266173|gb|ACS90855.1| KaiC domain protein [Thermococcus sibiricus MM 739]
          Length = 247

 Score = 42.1 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 89/265 (33%), Gaps = 36/265 (13%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+ V +G  G+D  L  GG P+  +V + G   +GKT  +   +    + G    +V  E
Sbjct: 2   IKRVETGIPGMDEIL-HGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLQMGEPGIYVALE 60

Query: 105 H--------------ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
                           +     + +   +         + E    I   L        ++
Sbjct: 61  EHPVQVRQNMAQFGWDVKPYEEQGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIDVL 120

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
             ++  +  R  +   +        +   S  + +L   ++ + C  +F++Q+ +     
Sbjct: 121 RQAIKDINARRVVVDSVTTLYINKPSLARS-IILQLKRVLAGTGCTSIFVSQISV----- 174

Query: 211 FGSPETTTGGNALKFYS--SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
               E   GG  ++      +RLD+       D+      ++ +       +   ++  F
Sbjct: 175 ---GERGFGGPGVEHGVDGIIRLDL-------DEIDGELKRSLIVWKMRGTSHSMRRHPF 224

Query: 269 DIMYGEGISFFGELIDLGVKASIVD 293
           +I       +  +++  G    IV+
Sbjct: 225 EITDKGITVYANKVLKRG---GIVE 246


>gi|213019042|ref|ZP_03334849.1| DNA repair protein RadA [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212995151|gb|EEB55792.1| DNA repair protein RadA [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 447

 Score = 42.1 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 61/157 (38%), Gaps = 8/157 (5%)

Query: 40  SIFEGIEVVS-----SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQK 93
                 E+++     +G   LD   G GG  +G  + I G    GK+TL L   A   Q 
Sbjct: 50  KALSDSEIITPDRFLTGIEELDRVFG-GGIVQGASILIGGEPGIGKSTLLLRIAANVVQL 108

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
           +   C +V  E +L+ +  R   + +    I    +     ++   + ++ ++  ++IDS
Sbjct: 109 SSFECLYVSGEESLEQVSLRAKRLKINEPKIKL-LSTVSLTDVVATIRKNKSIKFLIIDS 167

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           +  +            +     A  ++   ++ + S+
Sbjct: 168 IQTMYDSKVTSAPGTVTQVRTCAHELTVLAKQYSVSL 204


>gi|190571640|ref|YP_001975998.1| DNA repair protein RadA [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190357912|emb|CAQ55373.1| DNA repair protein RadA [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 450

 Score = 42.1 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 61/157 (38%), Gaps = 8/157 (5%)

Query: 40  SIFEGIEVVS-----SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQK 93
                 E+++     +G   LD   G GG  +G  + I G    GK+TL L   A   Q 
Sbjct: 53  KALSDSEIITPDRFLTGIEELDRVFG-GGIVQGASILIGGEPGIGKSTLLLRIAANVVQL 111

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
           +   C +V  E +L+ +  R   + +    I    +     ++   + ++ ++  ++IDS
Sbjct: 112 SSFECLYVSGEESLEQVSLRAKRLKINEPKIKL-LSTVSLTDVVATIRKNKSIKFLIIDS 170

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           +  +            +     A  ++   ++ + S+
Sbjct: 171 IQTMYDSKVTSAPGTVTQVRTCAHELTVLAKQYSVSL 207


>gi|57641977|ref|YP_184455.1| ATPase [Thermococcus kodakarensis KOD1]
 gi|57160301|dbj|BAD86231.1| ATPase, RecA superfamily [Thermococcus kodakarensis KOD1]
          Length = 233

 Score = 42.1 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           +E V +G  G D  +  GGF K +   I GP  SGKTT  +  +    K G   A++ 
Sbjct: 6   VERVPTGIEGFDPLI-EGGFVKSKSYLITGPPGSGKTTFGVQFLVDGAKRGEKVAYIS 62


>gi|84497239|ref|ZP_00996061.1| putative DNA repair protein [Janibacter sp. HTCC2649]
 gi|84382127|gb|EAP98009.1| putative DNA repair protein [Janibacter sp. HTCC2649]
          Length = 463

 Score = 42.1 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 56/150 (37%), Gaps = 9/150 (6%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-----GTCAF 100
           E   +G    D  LG GG   G +V + G    GK+TL L    ++ + G         +
Sbjct: 67  EARGTGVPEFDRVLG-GGLVPGAVVLVAGEPGIGKSTLLLDVAGRAARGGEPGQERRVLY 125

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E +   + +R   ++     +      +  L      +     +++++DSV  ++  
Sbjct: 126 VSGEESAAQVRSRAERIEAMARTLFLASETD--LATVLGQIDQVEPELVIVDSVQTISS- 182

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           AE+EG  G      +      A+ K     
Sbjct: 183 AEVEGAAGNVSQVREVAASLIAVAKARGIA 212


>gi|83943701|ref|ZP_00956159.1| hypothetical protein EE36_10824 [Sulfitobacter sp. EE-36]
 gi|83845381|gb|EAP83260.1| hypothetical protein EE36_10824 [Sulfitobacter sp. EE-36]
          Length = 505

 Score = 42.1 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + V++G   LD  LG GG   G    + GP   GKTT A+  +  +   G   A+   + 
Sbjct: 251 DAVTTGLDELDALLG-GGLVPGTNALLAGPAGVGKTTTAVRCMLAALNRGEKAAYFLFDE 309

Query: 106 ALDSI--YARKLGVDLKNLLIS 125
            L ++   +R LG+D++  + +
Sbjct: 310 RLSTLLTRSRALGMDVQPFIDN 331


>gi|258627919|gb|ACV85587.1| truncated RecA-like protein [Anaplasma phagocytophilum]
          Length = 34

 Score = 42.1 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 22/28 (78%)

Query: 8  NIVDKSKALEAALSQIQRVYGKGAIMQL 35
          +  DK +A++AA+ QI+R + +G+IM+L
Sbjct: 7  SPSDKQRAVDAAIGQIERAFERGSIMRL 34


>gi|134298060|ref|YP_001111556.1| DNA repair protein RadA [Desulfotomaculum reducens MI-1]
 gi|134050760|gb|ABO48731.1| DNA repair protein RadA [Desulfotomaculum reducens MI-1]
          Length = 449

 Score = 42.1 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 72/193 (37%), Gaps = 15/193 (7%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E  ++G + LD  LG GG   G +V + G    GK+TL L   +          +V  E 
Sbjct: 64  ERYATGLVELDRVLG-GGLVPGSLVLVGGDPGIGKSTLLLQAASAIAAGTRKVLYVSGEE 122

Query: 106 ALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           +   I   A ++G    NL +         + + + +++      +V+DS+  +  + EI
Sbjct: 123 SARQIKMRAERIGALHPNLYLMAETD----MSVVERVIKETTFSAVVVDSIQTVY-QPEI 177

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
               G      +          +   +++   + +F+     K G + G        + +
Sbjct: 178 SSAPGSVSQVRE-------CTGMLMKLAKGSGVPIFVVGHVTKEGTLAGPRVLEHIVDTV 230

Query: 224 KFYSSVRLDIRRV 236
            ++   R    R+
Sbjct: 231 LYFEGDRHQAYRI 243


>gi|331701834|ref|YP_004398793.1| DNA repair protein RadA [Lactobacillus buchneri NRRL B-30929]
 gi|329129177|gb|AEB73730.1| DNA repair protein RadA [Lactobacillus buchneri NRRL B-30929]
          Length = 457

 Score = 42.1 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 4/104 (3%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
            L+  LG GG   G ++ I G    GK+TL L    Q  K+G        E A       
Sbjct: 80  ELNRVLG-GGVVPGSLILIGGDPGIGKSTLMLQVSGQLSKSGKILYVSGEESASQIKMRA 138

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
                    L   P+T    +++    +     D +VIDSV  +
Sbjct: 139 DRLGVNGENLYVYPETD---MDVIKDTINEMKPDAVVIDSVQTM 179


>gi|288918321|ref|ZP_06412674.1| DNA repair protein RadA [Frankia sp. EUN1f]
 gi|288350216|gb|EFC84440.1| DNA repair protein RadA [Frankia sp. EUN1f]
          Length = 493

 Score = 42.1 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 48/138 (34%), Gaps = 3/138 (2%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +G   LD  LG GG   G ++ + G    GK+TL L   A+S   G     +  E +  
Sbjct: 108 PTGIGELDRVLG-GGLVPGAVILLAGEPGVGKSTLLLEVAARSAAAGSRALVITGEESAA 166

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +  R        L        E  L      V      ++V+DSV  ++  +      G
Sbjct: 167 QVRLRA--GRTGALHSDLWLAAETDLGAVLTHVEEVQPALLVVDSVQTISSASFDGSAGG 224

Query: 169 ESLPGMQARLMSQALRKL 186
            +        + +  + L
Sbjct: 225 VTQVREVTGALIRTAKAL 242


>gi|289432007|ref|YP_003461880.1| DNA repair protein RadA [Dehalococcoides sp. GT]
 gi|288945727|gb|ADC73424.1| DNA repair protein RadA [Dehalococcoides sp. GT]
          Length = 464

 Score = 42.1 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 69/192 (35%), Gaps = 7/192 (3%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--HALDS 109
               +  LG GG   G ++ + G    GK+TL L   A   ++GG   +V  E   A   
Sbjct: 73  ISEFNRVLG-GGIVPGSLMLLGGEPGIGKSTLLLQVAASVAQSGGKVVYVSGEENPAQIK 131

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           + A++LG+  + L +         L    +L  S    ++VIDS+  +            
Sbjct: 132 MRAQRLGISGEGLFLMAETDLNAILAQLSVLCPS----LVVIDSIQTVFLPELEAAPGAI 187

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           +     A  + Q  +   +S+  +  +    N    +I            G +   Y  +
Sbjct: 188 NQVRESALRLMQWAKSSGASVFITAHVTKEGNIAGPRILEHIVDVVMYFEGESQSAYRLI 247

Query: 230 RLDIRRVGSIKD 241
           R    R GS  +
Sbjct: 248 RSVKNRFGSTNE 259


>gi|182420070|ref|ZP_02951304.1| DNA repair protein RadA [Clostridium butyricum 5521]
 gi|237666798|ref|ZP_04526783.1| DNA repair protein RadA [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376107|gb|EDT73694.1| DNA repair protein RadA [Clostridium butyricum 5521]
 gi|237657997|gb|EEP55552.1| DNA repair protein RadA [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 458

 Score = 42.1 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 47/131 (35%), Gaps = 2/131 (1%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
              +    + + +G    D  +G GG  K  I  I     +GK+TL L    +  K G  
Sbjct: 59  NEVVSNKSDRIITGINEFDRVMG-GGIVKDSISIITARPGAGKSTLLLQISNEVSKRGLK 117

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
             +   E   DS    +    L  +  +     E +L+     +     D+++IDS+   
Sbjct: 118 VIYASGEE-SDSQIKNRADRILDKINENIWVLQETSLDNVLDAIEEIDPDLVIIDSIQTF 176

Query: 158 TPRAEIEGDMG 168
           T    +    G
Sbjct: 177 TMENAMPARAG 187


>gi|73748010|ref|YP_307249.1| DNA repair protein RadA [Dehalococcoides sp. CBDB1]
 gi|147668704|ref|YP_001213522.1| DNA repair protein RadA [Dehalococcoides sp. BAV1]
 gi|73659726|emb|CAI82333.1| DNA repair protein RadA [Dehalococcoides sp. CBDB1]
 gi|146269652|gb|ABQ16644.1| DNA replication and repair protein RadA [Dehalococcoides sp. BAV1]
          Length = 464

 Score = 42.1 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 69/192 (35%), Gaps = 7/192 (3%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--HALDS 109
               +  LG GG   G ++ + G    GK+TL L   A   ++GG   +V  E   A   
Sbjct: 73  ISEFNRVLG-GGIVPGSLMLLGGEPGIGKSTLLLQVAASVAQSGGKVVYVSGEENPAQIK 131

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           + A++LG+  + L +         L    +L  S    ++VIDS+  +            
Sbjct: 132 MRAQRLGISGEGLFLMAETDLNAILAQLSVLCPS----LVVIDSIQTVFLPELEAAPGAI 187

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           +     A  + Q  +   +S+  +  +    N    +I            G +   Y  +
Sbjct: 188 NQVRESALRLMQWAKSSGASVFITAHVTKEGNIAGPRILEHIVDVVMYFEGESQSAYRLI 247

Query: 230 RLDIRRVGSIKD 241
           R    R GS  +
Sbjct: 248 RSVKNRFGSTNE 259


>gi|292659688|pdb|3K0E|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant T426n
           Of The Kaic Circadian Clock Protein
 gi|292659689|pdb|3K0E|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant T426n
           Of The Kaic Circadian Clock Protein
 gi|292659690|pdb|3K0E|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant T426n
           Of The Kaic Circadian Clock Protein
 gi|292659691|pdb|3K0E|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant T426n
           Of The Kaic Circadian Clock Protein
 gi|292659692|pdb|3K0E|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant T426n
           Of The Kaic Circadian Clock Protein
 gi|292659693|pdb|3K0E|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant T426n
           Of The Kaic Circadian Clock Protein
          Length = 519

 Score = 42.1 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 61/181 (33%), Gaps = 30/181 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG + LD   G GGF K  I+   G   +GKT L    +  + 
Sbjct: 252 MRLTQRSSNV----RVSSGVVRLDEMCG-GGFFKDSIILATGATGTGKTLLVSRFVENAC 306

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
                      E +   +        +            ++ + P++   E  L+I    
Sbjct: 307 ANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSE 366

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +   +F 
Sbjct: 367 INDFKPARIAIDSLSALA-------------RGVSNNAFRQFVIGVTGYAKQEEITGLFT 413

Query: 201 N 201
           N
Sbjct: 414 N 414


>gi|226356199|ref|YP_002785939.1| DNA repair protein RadA [Deinococcus deserti VCD115]
 gi|226318189|gb|ACO46185.1| putative DNA repair protein RadA [Deinococcus deserti VCD115]
          Length = 449

 Score = 42.1 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 78/231 (33%), Gaps = 31/231 (13%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
              S+G   LD  LG G    G +  I G    GK+TL L    +  + GG   +V  E 
Sbjct: 70  PRTSTGIPELDRVLGGG-LVAGGVTLIGGEPGIGKSTLLLQVADRVSRQGGPVLYVAGEE 128

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +L+ I  R    D   +      T +   E    L+      + ++DS+  +T   E EG
Sbjct: 129 SLEQIRLRA---DRLGVTADIQLTRDTRAEHVAALMAEHKPALCIVDSIQTVT--VEGEG 183

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
             G          M      LT +   +    V +  +            T  G   ++ 
Sbjct: 184 APGGVAQVRDGTSM------LTRAAKETGTATVLVGHVTKDG--------TVAGPKVMEH 229

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276
                + +             G    ++ VKN+     +   F++  GEG+
Sbjct: 230 IVDTTVFL----------ETVGAFRLLRSVKNRFGQAGELGVFEMR-GEGL 269


>gi|254516567|ref|ZP_05128626.1| conserved hypothetical protein [gamma proteobacterium NOR5-3]
 gi|219674990|gb|EED31357.1| conserved hypothetical protein [gamma proteobacterium NOR5-3]
          Length = 293

 Score = 42.1 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 54/143 (37%), Gaps = 2/143 (1%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP-ESSGKT 81
           I    GK +  + G+  S     + + +G   LD  L   G+P G  +E+       G  
Sbjct: 68  IDTQQGK-SQDRDGAANSDIHYHQRIPTGFGALDARLCEQGWPLGTCIEVLSDASGMGAM 126

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
            L L  + +  +     AF+   +   +       +D + +L+  P   E+ L  T+  +
Sbjct: 127 GLFLPAMKELSQQERWQAFIAPPYTPYAPLLAARDIDTQKVLLVHPREREELLWSTEQAL 186

Query: 142 RSGAVDIIVIDSVAALTPRAEIE 164
           RSG   ++           AE+ 
Sbjct: 187 RSGTCSVVFSWLGNGEYRYAELR 209


>gi|241748274|ref|XP_002405692.1| DNA repair protein RAD51/RHP55, putative [Ixodes scapularis]
 gi|215505939|gb|EEC15433.1| DNA repair protein RAD51/RHP55, putative [Ixodes scapularis]
          Length = 319

 Score = 42.1 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           V S+GS  +D  +G GG   G+I EI G  +SGKT L     A 
Sbjct: 81  VFSTGSRKVDDVIG-GGVFTGQITEIVGASTSGKTQLCHSLTAH 123


>gi|119953215|ref|YP_945424.1| DNA repair protein RadA [Borrelia turicatae 91E135]
 gi|119861986|gb|AAX17754.1| DNA repair protein RadA [Borrelia turicatae 91E135]
          Length = 462

 Score = 42.1 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 5/119 (4%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G    D  LG  G   G  + I G    GK+T  L   +    +     ++  E ++  
Sbjct: 72  TGIEEFDRVLGA-GIVIGSAILISGEPGIGKSTFLLQISSILSLSDKNVLYLAGEESIPQ 130

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
           I  R   + + + ++    T E  ++    ++ +  +D IV+DS+  L  + E++G +G
Sbjct: 131 IKLRANRLRISSDILI---TNEINVDSLIKMLANIELDFIVVDSIQTLHSK-EVQGGLG 185


>gi|18873743|gb|AAL16343.1| KaiC [Nostoc linckia]
          Length = 209

 Score = 42.1 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 49/149 (32%), Gaps = 22/149 (14%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KT 94
           +  +  G+E + +   G D  +  GG P GR   I G   +GKT L+L  +         
Sbjct: 11  KPPLIGGVEKIRTMIEGFDD-ISHGGLPIGRTTLISGTSGTGKTLLSLQFLYNGITYFDE 69

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLIS------QPDTGEQALEI------------ 136
            G     +   +     A   G +L  L+              +  +I            
Sbjct: 70  PGVSVTFEESPSDIIRNAHIFGWNLPRLIEEGKLFILDASPDPEGQDIVGNFDLSALIER 129

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
               +R      + IDS+ A+  + E  G
Sbjct: 130 LQYAIRKYKAKRVSIDSITAVFQQYEAMG 158


>gi|292659695|pdb|3K0F|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
           Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
 gi|292659696|pdb|3K0F|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
           Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
 gi|292659697|pdb|3K0F|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
           Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
 gi|292659698|pdb|3K0F|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
           Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
 gi|292659699|pdb|3K0F|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
           Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
          Length = 519

 Score = 42.1 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 61/181 (33%), Gaps = 30/181 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG + LD   G GGF K  I+   G   +GKT L    +  + 
Sbjct: 252 MRLTQRSSNV----RVSSGVVRLDEMCG-GGFFKDSIILATGATGTGKTLLVSRFVENAC 306

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
                      E +   +        +            ++ + P++   E  L+I    
Sbjct: 307 ANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSE 366

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +   +F 
Sbjct: 367 INDFKPARIAIDSLSALA-------------RGVSNNAFRQFVIGVTGYAKQEEITGLFT 413

Query: 201 N 201
           N
Sbjct: 414 N 414


>gi|292659677|pdb|3K0A|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant S431a
           Of The Kaic Circadian Clock Protein
 gi|292659678|pdb|3K0A|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant S431a
           Of The Kaic Circadian Clock Protein
 gi|292659679|pdb|3K0A|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant S431a
           Of The Kaic Circadian Clock Protein
 gi|292659680|pdb|3K0A|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant S431a
           Of The Kaic Circadian Clock Protein
 gi|292659681|pdb|3K0A|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant S431a
           Of The Kaic Circadian Clock Protein
          Length = 519

 Score = 42.1 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 61/181 (33%), Gaps = 30/181 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG + LD   G GGF K  I+   G   +GKT L    +  + 
Sbjct: 252 MRLTQRSSNV----RVSSGVVRLDEMCG-GGFFKDSIILATGATGTGKTLLVSRFVENAC 306

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
                      E +   +        +            ++ + P++   E  L+I    
Sbjct: 307 ANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSE 366

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +   +F 
Sbjct: 367 INDFKPARIAIDSLSALA-------------RGVSNNAFRQFVIGVTGYAKQEEITGLFT 413

Query: 201 N 201
           N
Sbjct: 414 N 414


>gi|292659664|pdb|3JZM|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant T432a
           Of The Kaic Circadian Clock Protein
 gi|292659665|pdb|3JZM|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant T432a
           Of The Kaic Circadian Clock Protein
 gi|292659666|pdb|3JZM|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant T432a
           Of The Kaic Circadian Clock Protein
 gi|292659667|pdb|3JZM|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant T432a
           Of The Kaic Circadian Clock Protein
 gi|292659668|pdb|3JZM|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant T432a
           Of The Kaic Circadian Clock Protein
 gi|292659669|pdb|3JZM|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant T432a
           Of The Kaic Circadian Clock Protein
          Length = 519

 Score = 42.1 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 61/181 (33%), Gaps = 30/181 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG + LD   G GGF K  I+   G   +GKT L    +  + 
Sbjct: 252 MRLTQRSSNV----RVSSGVVRLDEMCG-GGFFKDSIILATGATGTGKTLLVSRFVENAC 306

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
                      E +   +        +            ++ + P++   E  L+I    
Sbjct: 307 ANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSE 366

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +   +F 
Sbjct: 367 INDFKPARIAIDSLSALA-------------RGVSNNAFRQFVIGVTGYAKQEEITGLFT 413

Query: 201 N 201
           N
Sbjct: 414 N 414


>gi|270307502|ref|YP_003329560.1| DNA repair protein RadA [Dehalococcoides sp. VS]
 gi|270153394|gb|ACZ61232.1| DNA repair protein RadA [Dehalococcoides sp. VS]
          Length = 462

 Score = 42.1 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 69/192 (35%), Gaps = 7/192 (3%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--HALDS 109
               +  LG GG   G ++ + G    GK+TL L   A   ++GG   +V  E   A   
Sbjct: 73  ISEFNRVLG-GGIVPGSLMLLGGEPGIGKSTLLLQVAASVAQSGGKVVYVSGEENPAQIK 131

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           + A++LG+  + L +         L    +L  S    ++VIDS+  +            
Sbjct: 132 MRAQRLGISGEGLFLMAETDLNAILAQLSVLSPS----LVVIDSIQTVFLPELEAAPGAI 187

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           +     A  + Q  +   +S+  +  +    N    +I            G +   Y  V
Sbjct: 188 NQVRESALRLMQWAKSSGASVFITAHVTKEGNIAGPRILEHIVDVVMYFEGESQSAYRLV 247

Query: 230 RLDIRRVGSIKD 241
           R    R GS  +
Sbjct: 248 RSVKNRFGSTNE 259


>gi|66360228|pdb|1U9I|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic With
           Phosphorylation Sites
 gi|66360229|pdb|1U9I|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic With
           Phosphorylation Sites
 gi|126030537|pdb|2GBL|C Chain C, Crystal Structure Of Full Length Circadian Clock Protein
           Kaic With Phosphorylation Sites
 gi|126030538|pdb|2GBL|D Chain D, Crystal Structure Of Full Length Circadian Clock Protein
           Kaic With Phosphorylation Sites
          Length = 519

 Score = 42.1 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 61/181 (33%), Gaps = 30/181 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG + LD   G GGF K  I+   G   +GKT L    +  + 
Sbjct: 252 MRLTQRSSNV----RVSSGVVRLDEMCG-GGFFKDSIILATGATGTGKTLLVSRFVENAC 306

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
                      E +   +        +            ++ + P++   E  L+I    
Sbjct: 307 ANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSE 366

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +   +F 
Sbjct: 367 INDFKPARIAIDSLSALA-------------RGVSNNAFRQFVIGVTGYAKQEEITGLFT 413

Query: 201 N 201
           N
Sbjct: 414 N 414


>gi|292659694|pdb|3K0F|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
           Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
          Length = 519

 Score = 42.1 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 61/181 (33%), Gaps = 30/181 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG + LD   G GGF K  I+   G   +GKT L    +  + 
Sbjct: 252 MRLTQRSSNV----RVSSGVVRLDEMCG-GGFFKDSIILATGATGTGKTLLVSRFVENAC 306

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
                      E +   +        +            ++ + P++   E  L+I    
Sbjct: 307 ANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSE 366

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +   +F 
Sbjct: 367 INDFKPARIAIDSLSALA-------------RGVSNNAFRQFVIGVTGYAKQEEITGLFT 413

Query: 201 N 201
           N
Sbjct: 414 N 414


>gi|292659676|pdb|3K0A|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant S431a
           Of The Kaic Circadian Clock Protein
          Length = 519

 Score = 42.1 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 61/181 (33%), Gaps = 30/181 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG + LD   G GGF K  I+   G   +GKT L    +  + 
Sbjct: 252 MRLTQRSSNV----RVSSGVVRLDEMCG-GGFFKDSIILATGATGTGKTLLVSRFVENAC 306

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
                      E +   +        +            ++ + P++   E  L+I    
Sbjct: 307 ANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSE 366

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +   +F 
Sbjct: 367 INDFKPARIAIDSLSALA-------------RGVSNNAFRQFVIGVTGYAKQEEITGLFT 413

Query: 201 N 201
           N
Sbjct: 414 N 414


>gi|297192896|ref|ZP_06910294.1| DNA repair protein RadA [Streptomyces pristinaespiralis ATCC 25486]
 gi|197722613|gb|EDY66521.1| DNA repair protein RadA [Streptomyces pristinaespiralis ATCC 25486]
          Length = 480

 Score = 42.1 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 47/128 (36%), Gaps = 3/128 (2%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G +V + G    GK+TL L   A++        +V  E +  
Sbjct: 74  STGVDELDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESAS 132

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +  R     +K L        E  L      + +    ++V+DSV  +          G
Sbjct: 133 QVRLRA--DRIKALHDHLYLAAETDLSAVLGHLDAVKPSLLVLDSVQTVASPEIDGAPGG 190

Query: 169 ESLPGMQA 176
            +     A
Sbjct: 191 MAQVREVA 198


>gi|123965396|ref|YP_001010477.1| DNA repair protein RadA [Prochlorococcus marinus str. MIT 9515]
 gi|123199762|gb|ABM71370.1| putative DNA repair protein RadA [Prochlorococcus marinus str. MIT
           9515]
          Length = 450

 Score = 42.1 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 82/229 (35%), Gaps = 27/229 (11%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
              I   +SG    D  LG GG   G +V + G    GK+T+ L +            ++
Sbjct: 61  LNTISRFTSGFKEFDRVLG-GGIVPGSLVLLGGEPGIGKSTIVLQSAGII-SLNEKVLYI 118

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
            AE +L+ +  R   ++  +L        E  L +    ++       +IDS+ A+    
Sbjct: 119 TAEESLEQVKIRWERLNQSSL--DLKIYAETNLSLIIEEIKKIKPSFAIIDSIQAIN--- 173

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
               +M  S   +      +A      ++++   I + I     K G +        G  
Sbjct: 174 --NDEMESSPGSVSQ---VRACSSELQNLAKENNIALLIIGHVTKEGAL-------AGPK 221

Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
            L+    V L+         +     +   ++ VKN+  S F+   F++
Sbjct: 222 TLEHLVDVVLNF--------EGDNIASHRLLRSVKNRFGSTFEIGIFEM 262


>gi|11141553|gb|AAG31996.1|AF277239_1 disrupted meiotic cDNA 1 protein [Heteranthelium piliferum]
 gi|11141555|gb|AAG31997.1|AF277240_1 disrupted meiotic cDNA 1 protein [Crithopsis delileana]
 gi|11141591|gb|AAG32015.1|AF277258_1 disrupted meiotic cDNA 1 protein [Hordeum murinum subsp. glaucum]
          Length = 138

 Score = 42.1 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 18/150 (12%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N++ ++  T E    +       +      ++++DSV AL          G      + 
Sbjct: 1   DNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAERQ 56

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR 234
           + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +R
Sbjct: 57  QKLAQMLSRLTXXXXXFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           +           G Q   K+         +
Sbjct: 117 KGK---------GEQRVCKIFDAPNLPEGE 137


>gi|329898010|ref|ZP_08272266.1| DNA repair protein RadA [gamma proteobacterium IMCC3088]
 gi|328920986|gb|EGG28408.1| DNA repair protein RadA [gamma proteobacterium IMCC3088]
          Length = 459

 Score = 41.8 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 53/145 (36%), Gaps = 8/145 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E     +SG+   D  LG GG   G  + + G   +GK+TL L T+           +V
Sbjct: 71  LEKTPRFTSGTSEFDRVLG-GGLVPGSAILVGGHPGAGKSTLLLQTMCHLA-KDREVLYV 128

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +   I  R  +L + +  L +      +  L   + +       ++V+DS+  +  
Sbjct: 129 TGEESPQQIAMRAHRLELPVDRLRLMAETNIDALLATAEEI----KPAVMVVDSIQVMHA 184

Query: 160 RAEIEGDMGESLPGMQARLMSQALR 184
                     S     A  +++  +
Sbjct: 185 DDITSAPGSVSQVRECAARLTRYAK 209


>gi|313897570|ref|ZP_07831112.1| ImpB/MucB/SamB family protein [Clostridium sp. HGF2]
 gi|312957522|gb|EFR39148.1| ImpB/MucB/SamB family protein [Clostridium sp. HGF2]
          Length = 506

 Score = 41.8 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAI---MQLGSQGSIFEGIEVV 48
            KE   +DK KAL+ A  QI++ YGK A+   M L    +     E +
Sbjct: 454 EKERAQLDKEKALQQATLQIKKKYGKNAVLKGMNLEEGANTIRRNETI 501


>gi|169596921|ref|XP_001791884.1| hypothetical protein SNOG_01234 [Phaeosphaeria nodorum SN15]
 gi|160707401|gb|EAT90883.2| hypothetical protein SNOG_01234 [Phaeosphaeria nodorum SN15]
          Length = 437

 Score = 41.8 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 61/188 (32%), Gaps = 26/188 (13%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-----GGTCAF 100
           + +S+    LD ALG GG P G +VE+ G   +GKT L L  +   Q         +  +
Sbjct: 95  DCISTLDEELDAALG-GGIPPGYLVEVTGESGAGKTQLLLTLLLAVQLPPPYGLAKSAVY 153

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPD-----------------TGEQALEITDMLVRS 143
           V  E  L +    +L      L     D                 + E  L     +   
Sbjct: 154 VSTEAVLSTKRLAQLLSSHPALASVSTDEKPSLSKILSIQTPDLESQEHILRYQLPVAIK 213

Query: 144 GAVDIIVIDSVAALTPRAEIEG---DMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
                +VI    A   RAE E    + G +    +   + Q    L          +V  
Sbjct: 214 KHGIGLVIIDSVAANYRAEFEKKGANNGAASMAKRGTQLVQLGALLRELARTEGIAVVVA 273

Query: 201 NQMRMKIG 208
           NQ+  +  
Sbjct: 274 NQVADRFT 281


>gi|123495109|ref|XP_001326663.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121909581|gb|EAY14440.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 288

 Score = 41.8 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 66/173 (38%), Gaps = 14/173 (8%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
              G + EI G   SG+T+L L   A S     +  ++D E  L      KL V     +
Sbjct: 102 LISGVVTEICGIPGSGRTSLCLR-YADSISNTHSTLWIDTEGGLCVPKDLKLHV---LRV 157

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +  P        I  ++   G V +IVIDS+AA   R +     G+        ++ + +
Sbjct: 158 LDHPMLFSLTRTIPKLVNDIGNVGLIVIDSIAA-PLRGQAVEMQGDRT-----SMLWELV 211

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
           + L S        ++  N +              + G++     + R++I++ 
Sbjct: 212 KVLKSIAISKGIAVLITNHLSTVPFH----GNVPSLGHSWSHACTHRVEIKKS 260


>gi|312793724|ref|YP_004026647.1| DnaB domain-containing protein helicase domain-containing protein
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180864|gb|ADQ41034.1| DnaB domain protein helicase domain protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 608

 Score = 41.8 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 42/116 (36%), Gaps = 6/116 (5%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E  + +S+G   LD  L  GGF  G +       S GKTT  L  I    + G  C F+ 
Sbjct: 331 EKFKAISTGFKQLDDVLN-GGFVAGNLYVFGAKPSVGKTTFLLQLIDNFLQQGYECVFLS 389

Query: 103 A----EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           A    E  L  I+ R+ G+   N+         + L             + V+   
Sbjct: 390 AEMPKEEILTRIFCREYGLKKANVK-VPAFDFYKKLRTQTATEEEMQEFMFVMQDY 444


>gi|292659684|pdb|3K0C|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
           Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
 gi|292659685|pdb|3K0C|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
           Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
          Length = 519

 Score = 41.8 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 61/181 (33%), Gaps = 30/181 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG + LD   G GGF K  I+   G   +GKT L    +  + 
Sbjct: 252 MRLTQRSSNV----RVSSGVVRLDEMCG-GGFFKDSIILATGATGTGKTLLVSRFVENAC 306

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
                      E +   +        +            ++ + P++   E  L+I    
Sbjct: 307 ANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSE 366

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +   +F 
Sbjct: 367 INDFKPARIAIDSLSALA-------------RGVSNNAFRQFVIGVTGYAKQEEITGLFT 413

Query: 201 N 201
           N
Sbjct: 414 N 414


>gi|292659682|pdb|3K0C|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
           Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
 gi|292659683|pdb|3K0C|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
           Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
 gi|292659686|pdb|3K0C|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
           Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
 gi|292659687|pdb|3K0C|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
           Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
          Length = 519

 Score = 41.8 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 61/181 (33%), Gaps = 30/181 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG + LD   G GGF K  I+   G   +GKT L    +  + 
Sbjct: 252 MRLTQRSSNV----RVSSGVVRLDEMCG-GGFFKDSIILATGATGTGKTLLVSRFVENAC 306

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
                      E +   +        +            ++ + P++   E  L+I    
Sbjct: 307 ANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSE 366

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +   +F 
Sbjct: 367 INDFKPARIAIDSLSALA-------------RGVSNNAFRQFVIGVTGYAKQEEITGLFT 413

Query: 201 N 201
           N
Sbjct: 414 N 414


>gi|78779824|ref|YP_397936.1| circadian clock protein KaiC [Prochlorococcus marinus str. MIT
           9312]
 gi|78713323|gb|ABB50500.1| circadian clock protein KaiC [Prochlorococcus marinus str. MIT
           9312]
          Length = 498

 Score = 41.8 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 59/185 (31%), Gaps = 30/185 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       +SSG   LD   G GG+ +  I+   G   +GKT L    +  + 
Sbjct: 237 MRLTQRSSNI----RISSGVKDLDDMCG-GGYFQDSIILATGATGTGKTMLVSKFVEDAY 291

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
                      E +   +        +            ++ + P++   E  L+I    
Sbjct: 292 NNNERAILFAYEESRAQLLRNATSWGIDFEKMESDGLLKIICAYPESTGLEDHLQIIKTQ 351

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       + IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 352 INQFKPKRMAIDSLSALA-------------RGVSLNAFRQFVIAVTGYTKQEEIAGFFT 398

Query: 201 NQMRM 205
           N    
Sbjct: 399 NTAEE 403



 Score = 38.7 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 4/86 (4%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA---LHTIAQSQKTGGTCAF 100
            ++ + +G  G D     GG P  R   I G   +GKT  +   LH    +    G    
Sbjct: 2   QVQKLPTGIEGFDDVC-RGGLPVSRSTLISGTSGTGKTVFSLQYLHHGICNFDEPGIFVT 60

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQ 126
            +         A   G DL+ L+   
Sbjct: 61  FEESPLDIIRNAASFGWDLQELIDQN 86


>gi|29346926|ref|NP_810429.1| replicative DNA helicase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338824|gb|AAO76623.1| replicative DNA helicase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 461

 Score = 41.8 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 50/171 (29%), Gaps = 21/171 (12%)

Query: 4   RKEMNIVDKSKALEA--ALSQIQRVYGKGAIMQ-----LGSQ--------GSIFEGIEVV 48
            + M+I D    ++A   L +++  +G    M+     +                GI  +
Sbjct: 131 DETMDIAD--TLIDAHNLLDRLEGEFGHNDHMRDMDALMTDTMEEAEQRIAKSVNGITGI 188

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--HA 106
            +G   L+      G   G ++ I    S GKT  ALH   Q+       A    E    
Sbjct: 189 PTGLTDLNRM--TSGLQNGELIAIAARPSVGKTAFALHLARQAAMQKHAVAVYSLEMQGE 246

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
             +        D+              +          A   I +D   ++
Sbjct: 247 RLADRWLLSASDINPYRWRTGIPNPHEVAEAHTTAAELARLPIHVDDSTSI 297


>gi|289548646|ref|YP_003473634.1| circadian clock protein, KaiC [Thermocrinis albus DSM 14484]
 gi|289182263|gb|ADC89507.1| putative circadian clock protein, KaiC [Thermocrinis albus DSM
           14484]
          Length = 288

 Score = 41.8 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 58/194 (29%), Gaps = 34/194 (17%)

Query: 20  LSQIQR-VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIAL-------------GIGGFP 65
           + + ++    + +I   G        ++ V +G  GLD                 +GG P
Sbjct: 2   MEEKEKPQIVEESIWIAGEAIKKAPRLQGVPTGVEGLDDLFFVAELVDGKIIKKPLGGIP 61

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD------SIYARKLGVDL 119
              +  I G   +GK+ +           G   AF+  E             A+ +G+D 
Sbjct: 62  AYSVTNITGVSDTGKSLMVEQYAVMQASRGEGVAFITVESPAPFVTVGLRERAKAMGIDW 121

Query: 120 KNLLISQP-----------DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            ++                +            +++  V   +IDSV  L    E    M 
Sbjct: 122 DSIQDRIVLIDAASHGRLRENLPDLFATLAYAIKTYKVRHTIIDSVTGLYEAKE---MMA 178

Query: 169 ESLPGMQARLMSQA 182
            ++       M + 
Sbjct: 179 RTIVRQLFNFMKKW 192


>gi|47847019|dbj|BAD21217.1| circadian clock protein KaiC [Acaryochloris marina]
          Length = 522

 Score = 41.8 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 60/183 (32%), Gaps = 30/183 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       VSSG   LD   G GGF    I+ + G   +GKT L    +  + 
Sbjct: 253 MRLTQRSSNA----RVSSGVQTLDEMCG-GGFFIDSIILVTGATGTGKTLLVSKFLEDAC 307

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
           K G        E +   +        +            +L + P++   E  L+     
Sbjct: 308 KNGDRAILFAYEESRAQLSRNAYSWGIDFEEMEQKGLLKILCTYPESAGLEDHLQQIKSE 367

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       I IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 368 IAEFKPSRISIDSLSALA-------------RGVSNNAFRQFVIGVTGFAKQEEITGFFT 414

Query: 201 NQM 203
           N  
Sbjct: 415 NTT 417



 Score = 41.8 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 56/183 (30%), Gaps = 10/183 (5%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           K  + Q          +  + +   G D  +  GG P GR   + G   +GKT  A+  +
Sbjct: 3   KSNLSQYKKNDKNKVEVTKILTRIEGFDD-ISHGGIPLGRTTLVSGTSGTGKTMFAIQFL 61

Query: 89  AQSQ-KTGGTCAFVDAEHALDSIYARKLG--------VDLKNLLISQPDTGEQALEITDM 139
                       FV  E +   I    L         +D   L I       +  +I   
Sbjct: 62  YHGIVHFDDPAVFVTFEESPKDIIQNALSFGWDLPQLMDDGKLFILDASPDPEGQDIAGE 121

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
              S  ++ I          R  I+           A ++ + + +LT+ + +     V 
Sbjct: 122 FDLSALIERIQYAISKYQAKRVGIDSVTAIFQQYDAATVVRREIFRLTARLKQIGVTTVM 181

Query: 200 INQ 202
             +
Sbjct: 182 TTE 184


>gi|227494798|ref|ZP_03925114.1| DNA repair protein RadA [Actinomyces coleocanis DSM 15436]
 gi|226831250|gb|EEH63633.1| DNA repair protein RadA [Actinomyces coleocanis DSM 15436]
          Length = 461

 Score = 41.8 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 12/138 (8%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT-----IAQSQKTGGTCAFVDA 103
           S+G   LD  LG GG   G +V + G    GK+TL L               G   ++  
Sbjct: 69  STGVSELDRVLG-GGIVPGAVVLLAGEPGVGKSTLLLDVASRAAADALASGAGPVLYISG 127

Query: 104 EHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           E +   I   A ++G    +LL++        LE     +      ++++DS+  +    
Sbjct: 128 EESASQIKLRAERIGALHNHLLLAAEAH----LETIIGHIEHQNPSLLILDSIQTVFSSD 183

Query: 162 EIEGDMGESLPGMQARLM 179
                 G +        +
Sbjct: 184 TEGAAGGVTQVRAVTSKL 201


>gi|219850942|ref|YP_002465374.1| hypothetical protein Mpal_0267 [Methanosphaerula palustris E1-9c]
 gi|219545201|gb|ACL15651.1| conserved hypothetical protein [Methanosphaerula palustris E1-9c]
          Length = 221

 Score = 41.8 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 48/131 (36%), Gaps = 15/131 (11%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E  S+G  GLD  L  GG P G IV I G   SG   LA      +   G T   +D E
Sbjct: 33  MEKRSTGISGLDQVL-EGGLPCGTIVLIQGNPLSGSDLLARQFWNAAADFG-TYLMLDGE 90

Query: 105 ------HALDSIYARKLGVDLKNLLISQPDT-GEQALEITDMLVRSGAVDI------IVI 151
                          + G     ++ S      E  ++IT   +RS    I      +++
Sbjct: 91  VESGMLSEFSPERTEEYGRGEVIIVDSLSTILLEHGIDITLAFLRSMKEQIRRTGGNLIV 150

Query: 152 DSVAALTPRAE 162
            +   L  + E
Sbjct: 151 LTYPGLHTQLE 161


>gi|152966439|ref|YP_001362223.1| fructose 1,6-bisphosphatase II [Kineococcus radiotolerans SRS30216]
 gi|151360956|gb|ABS03959.1| fructose-1,6-bisphosphatase, class II [Kineococcus radiotolerans
           SRS30216]
          Length = 350

 Score = 41.8 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 1/79 (1%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           GA ++L S G +   I   S GS  +DI LGIGG P+G I         G+    LH   
Sbjct: 192 GARIKLFSDGDVAASIAAASPGS-SIDILLGIGGTPEGIITACAMKAMGGQIQARLHAGD 250

Query: 90  QSQKTGGTCAFVDAEHALD 108
              +     A  D    L 
Sbjct: 251 DDARRRALEAGHDLHRILH 269


>gi|302346670|ref|YP_003814968.1| DNA repair protein RadA [Prevotella melaninogenica ATCC 25845]
 gi|302150487|gb|ADK96748.1| DNA repair protein RadA [Prevotella melaninogenica ATCC 25845]
          Length = 466

 Score = 41.8 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 58/179 (32%), Gaps = 17/179 (9%)

Query: 30  GAIMQLGSQGSIFEGI-----EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           G++  L ++      I       +      L+  LG GG   G IV + G    GK+TL 
Sbjct: 61  GSVSALANKPQRLRDISSHDDPRIDMHDGELNRVLG-GGLVPGSIVLLGGEPGIGKSTLT 119

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
           L TI    +         +          +     KN+  +     E +LE     +R  
Sbjct: 120 LQTILHMTQR----VLYVSGEESPHQIKMRAERISKNIAENIIILSETSLEHIFEHIRDV 175

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             +++VIDS+  ++           +     A         L      S   ++ I  +
Sbjct: 176 QPELVVIDSIQTISTEDVDSSPGSITQVRECASA-------LLRFAKTSGVPVILIGHI 227


>gi|315231470|ref|YP_004071906.1| hypothetical protein TERMP_01708 [Thermococcus barophilus MP]
 gi|315184498|gb|ADT84683.1| hypothetical protein TERMP_01708 [Thermococcus barophilus MP]
          Length = 247

 Score = 41.8 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 82/242 (33%), Gaps = 33/242 (13%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++ V +G  G+D  L  GG P+  +V + G   +GKT  +   +    + G    +V  E
Sbjct: 2   VKRVKTGIPGMDEIL-HGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLQMGEPGIYVALE 60

Query: 105 --HALDSIYARKLGVDLKNLLIS------------QPDTGEQALEITDMLVRSGAVDIIV 150
                      + G D+K                    + E    I   L        ++
Sbjct: 61  EHPVQVRQNMAQFGWDVKKYEEEGLFAMVDAFTAGIGRSKEYEKYIVHDLTDLREFIDVL 120

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
             ++  +  +  +   +        A   S  + +L   ++ + C  +F++Q+ +     
Sbjct: 121 RQAIRDIGAKRVVVDSVTTLYINKPAMARS-IILQLKRVLAGTGCTSIFVSQISV----- 174

Query: 211 FGSPETTTGGNALKFYS--SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
               E   GG  ++      +RLD+       D+      ++ +       +   ++  F
Sbjct: 175 ---GERGFGGPGVEHGVDGIIRLDL-------DEIDGELKRSLIVWKMRGTSHSMRRHPF 224

Query: 269 DI 270
           DI
Sbjct: 225 DI 226


>gi|154498005|ref|ZP_02036383.1| hypothetical protein BACCAP_01985 [Bacteroides capillosus ATCC
           29799]
 gi|150272995|gb|EDN00152.1| hypothetical protein BACCAP_01985 [Bacteroides capillosus ATCC
           29799]
          Length = 460

 Score = 41.8 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 8/111 (7%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   LD  LG GG  KG +V + G    GK+TL L       +      +V  E +   
Sbjct: 80  TGMSELDRVLG-GGAVKGSLVLVGGAPGIGKSTLMLQICDNLCRF-AKVLYVSGEESERQ 137

Query: 110 I--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           I   A +L V+ + L +         L+     V     DI+++DS+  L 
Sbjct: 138 IKLRAERLHVNGEGLYLLSETN----LDDIVEAVNELQPDILIVDSIQTLY 184


>gi|260589836|ref|ZP_05855749.1| conserved hypothetical protein [Blautia hansenii DSM 20583]
 gi|331086459|ref|ZP_08335538.1| hypothetical protein HMPREF0987_01841 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|260539809|gb|EEX20378.1| conserved hypothetical protein [Blautia hansenii DSM 20583]
 gi|330410517|gb|EGG89945.1| hypothetical protein HMPREF0987_01841 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 333

 Score = 41.8 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 97/267 (36%), Gaps = 31/267 (11%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA-------LDSIYARKLG 116
            P G++  I G    GKTT+ L  IA+  K       +  E         +       LG
Sbjct: 36  IPYGKVTIIQGDPGEGKTTVVLQIIAKLTKGEPILNEITEEETGVKPINVIYQTAEDGLG 95

Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDI----IVIDSVAALTPRAEIEGDMGESLP 172
             +K  L++      + L I D       VD      +I + A L     I+G +G  + 
Sbjct: 96  DTIKPRLLAAGADCSRVLVIDDQDQPLTMVDARLEEAIIQTKARLVVLDPIQGFLGAGVD 155

Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
             +A  +   +++++    + +C ++ I  M               G  ++ F ++ R  
Sbjct: 156 MHRANEIRPLMKRISVLAEKYQCAIILIGHMNKNSNGKSSYR----GLGSIDFQAAARSV 211

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292
           +  VG +KD+  I      +  VK+ +A     + F +   +G  + G+           
Sbjct: 212 LI-VGRVKDEPEI----RVICHVKSSLAPEGDAIAFRLDKEKGFHWIGKYDISAEDL--- 263

Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRE 319
                     G   GQ   ++K FL+E
Sbjct: 264 --------LSGDGRGQKIRSAKEFLKE 282


>gi|325283319|ref|YP_004255860.1| DNA repair protein RadA [Deinococcus proteolyticus MRP]
 gi|324315128|gb|ADY26243.1| DNA repair protein RadA [Deinococcus proteolyticus MRP]
          Length = 450

 Score = 41.8 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 58/159 (36%), Gaps = 12/159 (7%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
              SSG   LD  LG G    G +  I G    GK+TL L    Q  + GG+  +V  E 
Sbjct: 72  PRTSSGIPELDRVLGGG-LVAGGVTLIGGEPGIGKSTLLLQVADQITRRGGSVLYVAGEE 130

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +L+ I  R   + ++  +     T +   E    L+      + ++DS+  +T   E   
Sbjct: 131 SLEQIRLRADRLGVQGDIQ---LTRDTRAEHVAALMEEHKPALCIVDSIQTVTAEGEG-- 185

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
                        + +    LT +   +    V +  + 
Sbjct: 186 ------VSGGIAQVREGTAVLTRAAKETGTATVLVGHVT 218


>gi|300790482|ref|YP_003770773.1| DNA repair protein RadA/Sms [Amycolatopsis mediterranei U32]
 gi|299799996|gb|ADJ50371.1| DNA repair protein RadA/Sms [Amycolatopsis mediterranei U32]
          Length = 452

 Score = 41.8 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 5/127 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +G   LD  LG GG   G +V + G    GK+TL L    Q  KT     +V  E +  
Sbjct: 70  RTGVPELDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLEVAYQWAKTVDRSLYVTGEESAG 128

Query: 109 SIYARK-LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
            +  R     ++ + +    ++    L      V      ++++DS+  +          
Sbjct: 129 QVRLRAERTGNVHDRMYLAAESD---LSAILGHVDDVKPGVLIVDSIQTMASPQVDGSPG 185

Query: 168 GESLPGM 174
           G +    
Sbjct: 186 GVTQVRA 192


>gi|257387709|ref|YP_003177482.1| circadian clock protein, KaiC [Halomicrobium mukohataei DSM 12286]
 gi|257170016|gb|ACV47775.1| putative circadian clock protein, KaiC [Halomicrobium mukohataei
           DSM 12286]
          Length = 344

 Score = 41.8 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 51/135 (37%), Gaps = 15/135 (11%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
                   I  +  G  GLD  +  GG P+  ++   G   +GKTT  L  +    + G 
Sbjct: 107 EDDDFESEIPRIDLGIDGLDQMI-QGGIPERHLIVTIGSAGTGKTTFGLQFLHHGLQQGD 165

Query: 97  TCAFVDAEHALDSI--YARKLGVDLKNL------------LISQPDTGEQALEITDMLVR 142
              F+  E + ++I   A + G + ++              +   ++ +        L+ 
Sbjct: 166 NAVFITLEQSREAIIATAEERGWEFEHYEETGQLAIVDLDPVEMANSLDNIRGELPALIE 225

Query: 143 SGAVDIIVIDSVAAL 157
               D +V+DSV+ L
Sbjct: 226 EFDADRLVLDSVSLL 240


>gi|119025376|ref|YP_909221.1| DNA repair protein RadA [Bifidobacterium adolescentis ATCC 15703]
 gi|118764960|dbj|BAF39139.1| alkylation damage repair protein [Bifidobacterium adolescentis ATCC
           15703]
          Length = 472

 Score = 41.8 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 49/150 (32%), Gaps = 9/150 (6%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT------IAQSQKTGG 96
           E I  +++G    D  LG GG   G +  I G    GK+TL L T      +        
Sbjct: 75  ENISRIATGFSEFDRVLG-GGIVPGSVTLIAGEPGIGKSTLLLETAGNVARLTAFATERN 133

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
           T  ++  E +   +  R     +  +  +        L     L+      + ++DS   
Sbjct: 134 TVLYISGEESQAQVRMRA--SRIGAMEPNLLLASTTDLSTVLGLIEQFKPALAIVDSAQT 191

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           +  +       G +     A  +    + L
Sbjct: 192 IVSQDVDGISGGSTQVREVASALIDTAKTL 221


>gi|319787764|ref|YP_004147239.1| hypothetical protein Psesu_2173 [Pseudoxanthomonas suwonensis 11-1]
 gi|317466276|gb|ADV28008.1| hypothetical protein Psesu_2173 [Pseudoxanthomonas suwonensis 11-1]
          Length = 202

 Score = 41.8 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 1/84 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPE-SSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
            SG   LD  L  GG+P+  + E+  P    G+  L L T+A+    GGT   V      
Sbjct: 31  PSGHAALDARLPQGGWPRRALTELLLPANGVGELALLLPTLARMTAVGGTVVLVAPPFVP 90

Query: 108 DSIYARKLGVDLKNLLISQPDTGE 131
            +   +  GVDL  L +      +
Sbjct: 91  YAPAWQAAGVDLAGLHVVDASPRD 114


>gi|255281156|ref|ZP_05345711.1| toprim domain protein [Bryantella formatexigens DSM 14469]
 gi|255268113|gb|EET61318.1| toprim domain protein [Bryantella formatexigens DSM 14469]
          Length = 625

 Score = 41.8 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 59/274 (21%), Positives = 95/274 (34%), Gaps = 23/274 (8%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK---LGVDLK 120
            P G++  + G    GKTT AL   A    TGGT   +        IY      LG  +K
Sbjct: 329 IPFGKVTIVQGNPGEGKTTFALRLAAAC-TTGGTLPGMKPMQPFQVIYQTAEDGLGDTVK 387

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEGDMGESLPGMQA 176
             LI      ++ L I +        D      +I + A L     I+  MG+     +A
Sbjct: 388 PRLIEAAADLDRVLVIDEAKRELTLSDERIEKAIIQNGARLIILDPIQAYMGDKADMNKA 447

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
             +    R+L     R+ C ++ I    +       S     G    +  +   L I R 
Sbjct: 448 NEVRPIFRRLAEVAERTGCAVILI--GHLNKAAGGQSAYRGLGSIDFRAAARSVLLIGR- 504

Query: 237 GSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
             +K + ++      +   K+ +A   K V F +    G  + GE      +      SG
Sbjct: 505 --VKREPNV----RVIIHDKSSLAPEGKPVAFCLDPETGFEWIGEYDITADELL----SG 554

Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAEN-IES 329
           A  +    +  Q  +     L +  E+A   IE 
Sbjct: 555 AGGN-NATKTEQAEKLILDLLADGKELASEDIEK 587


>gi|11141587|gb|AAG32013.1|AF277256_1 disrupted meiotic cDNA 1 protein [Aegilops speltoides]
          Length = 138

 Score = 41.8 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 18/150 (12%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N++ ++  T E    +       +      ++++DSV AL          G      + 
Sbjct: 1   DNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAERQ 56

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR 234
           + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +R
Sbjct: 57  QKLAQMLSRLTXXXEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           +           G Q   K+         +
Sbjct: 117 KGK---------GEQRVCKIFDAPNLPEGE 137


>gi|302785862|ref|XP_002974702.1| hypothetical protein SELMODRAFT_101803 [Selaginella moellendorffii]
 gi|300157597|gb|EFJ24222.1| hypothetical protein SELMODRAFT_101803 [Selaginella moellendorffii]
          Length = 202

 Score = 41.8 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG-TCAFVDAEHALDSIYARKL 115
           L  GG   G I E+ GP SSGKT L +H+ A        + A+VDA  +  +    ++
Sbjct: 3   LLKGGLKDGTITELVGPSSSGKTQLCMHSAACVAYHHKFSVAYVDASSSFSAERVLQM 60


>gi|302543538|ref|ZP_07295880.1| DNA repair protein RadA [Streptomyces hygroscopicus ATCC 53653]
 gi|302461156|gb|EFL24249.1| DNA repair protein RadA [Streptomyces himastatinicus ATCC 53653]
          Length = 189

 Score = 41.8 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 3/111 (2%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G +V + G    GK+TL L   A++        +V AE +  
Sbjct: 77  STGVDELDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLDVAAKAATDDHRTLYVTAEESAS 135

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
            +  R     +  L        E  L      + S    ++++DSV  +  
Sbjct: 136 QVRLRA--DRIGALNEHLYLAAETDLSAVLGHLDSVKPSLLILDSVQTVAS 184


>gi|182413053|ref|YP_001818119.1| putative circadian clock protein, KaiC [Opitutus terrae PB90-1]
 gi|177840267|gb|ACB74519.1| putative circadian clock protein, KaiC [Opitutus terrae PB90-1]
          Length = 518

 Score = 41.8 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 69/182 (37%), Gaps = 16/182 (8%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M L        G   +S G + LD  +G GG  +G  V I GP  +GK+ LA   I    
Sbjct: 251 MGLVGAKGKRSGNRRLSVGVVELDTLMG-GGILEGDSVLIAGPSGTGKSVLATQFIDTGL 309

Query: 93  KTG--GTCAFVDAEHALDSIYARKLGVDLKN--------LLISQP--DTGEQALEITDML 140
           + G  G     +   A  +  A  LG++ +         +L  +P   + ++ ++     
Sbjct: 310 QAGEAGIIVVFEERPAGYARRAASLGLNFQPALDAGTLEILYLRPLDLSVDETMQEILDA 369

Query: 141 VRSGAVDIIVIDSVAA--LTPRAEIEGDMGESLPGMQARLMSQALRKL-TSSISRSKCIL 197
           V+      +VIDS+    +        D  ESL  M A L    +  L T  I  S    
Sbjct: 370 VKRTGAQRLVIDSLVGFEMALAPGFRADFRESLYRMIAALTGAGVTVLSTVEIEDSFTSF 429

Query: 198 VF 199
            F
Sbjct: 430 QF 431



 Score = 41.4 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 3/73 (4%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  + +G  GLD  LG GG P+     I G    GKTTLA      +        +   
Sbjct: 23  AIRQLPTGVRGLDEILG-GGLPEYSFNLIAGTPGCGKTTLAHQIAFANATAERPALYFTV 81

Query: 104 --EHALDSIYARK 114
             E AL  +  ++
Sbjct: 82  LGEPALKMLRYQQ 94


>gi|115376342|ref|ZP_01463580.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|115366621|gb|EAU65618.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
          Length = 429

 Score = 41.8 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 40/106 (37%), Gaps = 6/106 (5%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G  GLD  L  GG   G    I G   SGKTTLAL  I +  K G    +V+       
Sbjct: 216 TGVKGLDTML-QGGVWAGSSTLIEGRTGSGKTTLALQFILEGLKRGEPGLYVN-----FQ 269

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
               +L   +++L     +     L +         +D I++    
Sbjct: 270 ENPTQLARIIQSLGWDVAEAQRMGLHLLYHSPVELQIDSILVKLFR 315


>gi|31087789|gb|AAN27929.1| disrupted meiotic cDNA 1 [Hordeum brevisubulatum subsp. violaceum]
          Length = 139

 Score = 41.8 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 18/152 (11%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N++ ++  T E    +       +      ++++DSV AL          G      + 
Sbjct: 1   DNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAERQ 56

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR 234
           + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +R
Sbjct: 57  QKLAQMLSRLTKXXXXXNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           +           G Q   K+         + V
Sbjct: 117 KGK---------GEQRVCKIFDAPNLPEGEAV 139


>gi|302342568|ref|YP_003807097.1| DNA repair protein RadA [Desulfarculus baarsii DSM 2075]
 gi|301639181|gb|ADK84503.1| DNA repair protein RadA [Desulfarculus baarsii DSM 2075]
          Length = 448

 Score = 41.8 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 4/123 (3%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
             + SG   LD  LG GG   G  V + G    GK+TL L   A          +V AE 
Sbjct: 65  PRLPSGLCELDRVLG-GGLVAGMAVVVGGEPGIGKSTLMLQLAASLSTAQRRVLYVSAEE 123

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +   +  R   + L           E ALE     +  G   ++++DS+ AL   A++ G
Sbjct: 124 SAAQVGLRARRLGLGG--QGVDLLAETALEPVLEQIARGGHGVVIVDSIQALRS-ADLAG 180

Query: 166 DMG 168
             G
Sbjct: 181 APG 183


>gi|91070363|gb|ABE11277.1| putative circadian clock protein KaiC [uncultured Prochlorococcus
           marinus clone HF10-88H9]
          Length = 509

 Score = 41.8 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 35/106 (33%), Gaps = 14/106 (13%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
            +  GK   MQ          ++ + +G  G D     GG P  R   + G   +GKT  
Sbjct: 3   DKKLGKSNKMQ----------VQKLPTGIEGFDDVC-RGGLPVSRSTLVSGTSGTGKTVF 51

Query: 84  A---LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           +   LH    +    G     +         A   G DL+ L+   
Sbjct: 52  SLQYLHHGICNFDEPGIFVTFEESPLDIIRNAASFGWDLQELIDQN 97



 Score = 41.4 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 59/185 (31%), Gaps = 30/185 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       +SSG   LD   G GG+ +  I+   G   +GKT L    +  + 
Sbjct: 248 MRLTQRSSNI----RISSGVKDLDDMCG-GGYFQDSIILATGATGTGKTMLVSKFVEDAY 302

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
                      E +   +        +            ++ + P++   E  L+I    
Sbjct: 303 DNNERAILFAYEESRAQLLRNATSWGIDFEKMESDGLLKIICAYPESTGLEDHLQIIKTQ 362

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       + IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 363 INQFKPKRMAIDSLSALA-------------RGVSLNAFRQFVIAVTGYTKQEEIAGFFT 409

Query: 201 NQMRM 205
           N    
Sbjct: 410 NTAEE 414


>gi|328883257|emb|CCA56496.1| DNA repair protein RadA [Streptomyces venezuelae ATCC 10712]
          Length = 464

 Score = 41.8 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 5/129 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G +V + G    GK+TL L   A++        +V  E +  
Sbjct: 74  STGVDELDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESAS 132

Query: 109 SIYARKLGVD-LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
            +  R   ++ L + L    +T    L      + +    ++++DSV  +          
Sbjct: 133 QVRLRADRINALSDHLYLAAETD---LSAVLGHLDAVKPSLLIMDSVQTVASPEIDGAPG 189

Query: 168 GESLPGMQA 176
           G +     A
Sbjct: 190 GMAQVREVA 198


>gi|317029820|ref|XP_001391285.2| hypothetical protein ANI_1_1566064 [Aspergillus niger CBS 513.88]
          Length = 465

 Score = 41.8 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 71/223 (31%), Gaps = 34/223 (15%)

Query: 39  GSIFEGIEVVSSGSLGLDIAL------------------GIG------GFPKGRIVEIYG 74
                G   + +G + LD A+                  G G      G P G + E++G
Sbjct: 33  PDAASGRNAIPTGLVALDEAISAPVTLSSSTTNERIRESGEGEVERLKGLPVGHVTEVFG 92

Query: 75  PESSGKTTLA-----LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
           P  +GKT L      L  +     +    +  +    + +     L     +   S P  
Sbjct: 93  PPGAGKTMLGPRLRKLLELQSPASSSSPRSLTETLTYIRAPTLPHLLSLFHHPPASFPPP 152

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
               L I    V +         S      +A  + D+ + L   +  ++S    +LT  
Sbjct: 153 NTTLLVIDS--VSAPFTPYFPNPSDVNQPQQA--QRDVQKWLTTRKWNVISDLAAQLTKF 208

Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTT-GGNALKFYSSVRL 231
            SR+   ++ INQ   +I     +  +    G   +     R+
Sbjct: 209 ASRANLAVLVINQTHTRIRGQVRATLSPILSGRGWESCVRARV 251


>gi|315056697|ref|XP_003177723.1| DNA repair protein RAD57 [Arthroderma gypseum CBS 118893]
 gi|311339569|gb|EFQ98771.1| DNA repair protein RAD57 [Arthroderma gypseum CBS 118893]
          Length = 608

 Score = 41.8 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 63/183 (34%), Gaps = 27/183 (14%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-----GTCAFV 101
            +S+    LD AL  GG   G + E+ G   +GKT   LH +   Q            ++
Sbjct: 119 RISTLDPVLDAALN-GGISTGYLTEVTGESGAGKTQFLLHLLLSVQLPAPHGLSKNALYI 177

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI-------------------TDMLVR 142
             E  L +    +L  + + +    P T   +L+                      + + 
Sbjct: 178 STESDLATNRLSQLLNEHRTIQALHPHTPRPSLDNIYSVTTVDLESQEHIINYQIPVAIS 237

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
              + I++IDS+ A   RAE   +    L     + + +    L +        +V  NQ
Sbjct: 238 RYNIGIVIIDSITA-NYRAESSTENVSGLLERSGQ-LKKLGHFLRTLAVTHNIAIVVANQ 295

Query: 203 MRM 205
           +  
Sbjct: 296 ISD 298


>gi|311106702|ref|YP_003979555.1| SOS cell division inhibitor SulA [Achromobacter xylosoxidans A8]
 gi|310761391|gb|ADP16840.1| SOS cell division inhibitor SulA [Achromobacter xylosoxidans A8]
          Length = 234

 Score = 41.8 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 2/105 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGP-ESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
            + +G   L   L  GG+P G ++E+  P    G+  L L       +T    A V   H
Sbjct: 24  TLPTGHAALSAELPDGGWPLGSLIELMAPHPGIGEIRL-LRPALAQLETRRAIALVQPPH 82

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           A          +D + LL   P+    AL   + ++++G+   ++
Sbjct: 83  APHIASWMSWRLDPRQLLWVAPEKPVDALWAAEQILKNGSCGALI 127


>gi|329964168|ref|ZP_08301321.1| replicative DNA helicase [Bacteroides fluxus YIT 12057]
 gi|328525644|gb|EGF52676.1| replicative DNA helicase [Bacteroides fluxus YIT 12057]
          Length = 463

 Score = 41.8 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 13/92 (14%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            + ++  L Q++         ++ +      GI  + +G L LD      G+ KG ++ I
Sbjct: 160 DRLMQDTLKQLED--------RMANNSG---GITGIPTGLLSLDKL--TAGWQKGDLIVI 206

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
               S GKT  ALH    + + G        E
Sbjct: 207 AARPSVGKTAFALHLALIAGRAGKHVLVNSLE 238


>gi|303251373|ref|ZP_07337551.1| hypothetical protein APP6_0574 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307252396|ref|ZP_07534292.1| Replicative DNA helicase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|302649915|gb|EFL80093.1| hypothetical protein APP6_0574 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306859988|gb|EFM92005.1| Replicative DNA helicase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
          Length = 451

 Score = 41.8 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 60/182 (32%), Gaps = 28/182 (15%)

Query: 6   EMNIVDKSKALEAALSQIQRVYG------------------KGAIMQLGSQGSIFEGIEV 47
           E+ +   ++ L+  L  I+R +                   K  ++++ S     + +  
Sbjct: 126 EIQVAKSAEKLDELLENIERQFTDLTLSQQTEGVIDLNETLKKVVLRMESSAQNADPVTG 185

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT------CAFV 101
             +G   LD     G    G  + I    S GKT         + +             +
Sbjct: 186 TPTGIQELDEVTTGG--QAGDFIVIGARPSMGKTAFCQTIAYHTLEKFKDLPIQFYSMEM 243

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM--LVRSGAVDIIVIDSVAALTP 159
            AE  L    A +  V L+ +  +     ++  +I+     +     + ++ID    LTP
Sbjct: 244 PAEQILQRFLAMRARVSLQAIRKADQLGEDEWAKISLAMGHILDEWKNRLLIDDEGGLTP 303

Query: 160 RA 161
           + 
Sbjct: 304 QK 305


>gi|240123856|ref|ZP_04736812.1| Putative replicative DNA helicase, putative phage associated
           protein [Neisseria gonorrhoeae PID332]
 gi|268682480|ref|ZP_06149342.1| replicative DNA helicase [Neisseria gonorrhoeae PID332]
 gi|268622764|gb|EEZ55164.1| replicative DNA helicase [Neisseria gonorrhoeae PID332]
          Length = 453

 Score = 41.8 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 93/268 (34%), Gaps = 29/268 (10%)

Query: 4   RKEMNIVDKSKAL-EAALSQIQRVYGKGAIMQLGSQGSIFEGIEV-VSSGSLGLDIALGI 61
            K     D+  A+ + A+ +  + +G+     +G      +G+   + +G + LD     
Sbjct: 140 EKLSKAADELAAVGKDAVKRETKTFGQTVEDLIGDLDKRLDGVRFGLPTGLMKLDGM--T 197

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK- 120
           GG P G ++ I    S GKT LA +    + K G    F   E +   +  R +  +   
Sbjct: 198 GGLPDGNLIVIAARPSMGKTVLAENIARFALKQGKAVHFQSYEMSAVELARRGMAAECNI 257

Query: 121 --------NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
                   NL  S        +            D++ +D +  L    ++   + + L 
Sbjct: 258 PMQNLKTGNLTQSDYANMPIYVSQAKEWKFDVNCDLLNVDELCFLAKEKKLTTGL-DLLV 316

Query: 173 GMQARLM--------------SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
                +M              S+ L+ L + ++    ++  +N+   K      +     
Sbjct: 317 VDHLHIMPRAGRDEVAELGNISRRLKNLAAELNIPVVLVAQLNRGNTKQADKRPNMADIR 376

Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           G  A++  +++ +   R  S  D +   
Sbjct: 377 GSGAIEQDANIIIMPHR-ESYYDGNENP 403


>gi|115376878|ref|ZP_01464100.1| KaiC domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|310821794|ref|YP_003954152.1| Circadian clock family protein KaiC [Stigmatella aurantiaca
           DW4/3-1]
 gi|115366120|gb|EAU65133.1| KaiC domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|309394866|gb|ADO72325.1| Circadian clock family protein KaiC [Stigmatella aurantiaca
           DW4/3-1]
          Length = 491

 Score = 41.8 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 54/261 (20%), Positives = 88/261 (33%), Gaps = 30/261 (11%)

Query: 33  MQLGSQG---------------SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           M+LG++G                     +  S G    D AL  GG P      + G   
Sbjct: 216 MRLGNEGVEVIPRLETQPPHDIDDLPAFKRSSFGLTEFD-ALMEGGLPSLSTTLLAGSMG 274

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDA--EHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
            GKT LA H  AQ  + G    FV       +    AR++G+D+   L        + L 
Sbjct: 275 IGKTLLATHFAAQGAREGEQTLFVSFFEPPGMLIARARRIGLDVAEHL---ARGTLKMLH 331

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ-ALRKLTSSISRSK 194
           +      + A+   +++ VA L  R  +   + E    +         L  L + +    
Sbjct: 332 LPPSEQEADAIVHHILEEVARLGVRRLVVDGLTELERSIVDPERRHLFLATLGAHLRHLG 391

Query: 195 CILVFINQMRMKIGVMFGSPETTTG----GNALKFYSSVRLDIRRVGSIKDKDSIT--GN 248
              +F  ++    G      +T          L  Y  +R  I RV SI         GN
Sbjct: 392 ITSLFTKEVSKVAGTELDFNDTPIAMLGENLVLLRYVELRGRIHRVLSILKMRDSRYDGN 451

Query: 249 --QTRVKVVKNKMASPFKQVE 267
             +  +K    ++ +P +  E
Sbjct: 452 LREFEIKDEGIRVLAPMRSAE 472



 Score = 39.8 bits (91), Expect = 0.68,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 21/67 (31%), Gaps = 1/67 (1%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SG    D  LG GG P+ + + I G    GKT L      ++                  
Sbjct: 13  SGIPSFDALLG-GGIPRRQSLIITGDPGCGKTILCGQVAFRAAARDVPVVLATVTSEPHD 71

Query: 110 IYARKLG 116
              + L 
Sbjct: 72  KLVQALS 78


>gi|227496701|ref|ZP_03926976.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434]
 gi|226833798|gb|EEH66181.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434]
          Length = 488

 Score = 41.8 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 10/142 (7%)

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           GR+  + G  +SGKT  ALH  A+    G T  F+D E       AR +   L +L  + 
Sbjct: 63  GRVSTLIGGPASGKTWTALHLCAEVISEGHTVVFIDWEDD-----ARGITSRLLDLGANP 117

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL-----MSQ 181
            D  E+   I      S      + D+V +L P   +    GE++            +S 
Sbjct: 118 ADVTERFTYIHPDEPYSPQASQALTDTVTSLHPLLIVLDSTGEAMRADGVEQNSDGEVSA 177

Query: 182 ALRKLTSSISRSKCILVFINQM 203
              +L   ++ +   ++ ++  
Sbjct: 178 WFARLARPLADTGPAVLLLDHQ 199


>gi|171190300|gb|ACB42456.1| disrupted meiotic cDNA protein [Hordelymus europaeus]
          Length = 138

 Score = 41.8 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 52/151 (34%), Gaps = 20/151 (13%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N++ ++  T E    +       +      ++++DSV AL          G      + 
Sbjct: 1   DNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAERQ 56

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIG----VMFGSPETTTGGNALKFYSSVRLD 232
           + ++Q L +LT         +   NQ+ +       +    P+   GG+ L   +++RL 
Sbjct: 57  QKLAQMLSRLTKIAEEFNVAVYITNQVPVIADPGGGMFITDPKKPAGGHVLAHAATIRLM 116

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263
           +R+           G Q   K+         
Sbjct: 117 LRKGK---------GEQRVCKIFDAPNLPEG 138


>gi|300727734|ref|ZP_07061120.1| DNA repair protein RadA [Prevotella bryantii B14]
 gi|299775022|gb|EFI71628.1| DNA repair protein RadA [Prevotella bryantii B14]
          Length = 473

 Score = 41.8 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 49/152 (32%), Gaps = 13/152 (8%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--Y 111
             +  LG GG   G I  + G    GK+TL L TI    +   T  +V  E +   I   
Sbjct: 93  EFNRVLG-GGMVPGSITLLGGEPGIGKSTLTLQTIINMPER--TILYVSGEESAHQIKLR 149

Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171
           A +L  +  N            LE     +     D I+IDS+  ++           S 
Sbjct: 150 AERLNRNHTNTEHISILCET-NLEKIFQRISEYKPDFIIIDSIQTISTENVDSSPGSISQ 208

Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQM 203
               A         L      S   ++ I  +
Sbjct: 209 VRECAAA-------LLRFAKTSGIPVILIGHI 233


>gi|78778521|ref|YP_396633.1| DNA repair protein RadA [Prochlorococcus marinus str. MIT 9312]
 gi|78712020|gb|ABB49197.1| DNA repair protein RadA [Prochlorococcus marinus str. MIT 9312]
          Length = 449

 Score = 41.8 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 80/230 (34%), Gaps = 31/230 (13%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + I   +SG    D  LG GG   G +V + G    GK+T+ L +  +         +V 
Sbjct: 62  KKISRFTSGFNEFDRVLG-GGIVPGSVVLLGGEPGIGKSTIVLQSAGKI-SLNEKVLYVT 119

Query: 103 AEHALDS--IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           AE +L+   I   +L  +  +L I         L +    ++       +IDS+ A+   
Sbjct: 120 AEESLEQVKIRWERLNQNSIDLKIFAETN----LSLIIKEIKRVNPSFAIIDSIQAIHNH 175

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
                    S     +  +         ++++   I + I     K G +        G 
Sbjct: 176 EMESSPGSVSQVRECSSELQ--------NLAKQNNIALLIIGHVTKDGTL-------AGP 220

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
             L+      ++         +     +   ++ +KN+  S F+   F++
Sbjct: 221 KTLEHLVDAVINF--------EGDNISSHRLLRSIKNRFGSTFEIGIFEM 262


>gi|296422275|ref|XP_002840687.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636908|emb|CAZ84878.1| unnamed protein product [Tuber melanosporum]
          Length = 408

 Score = 41.8 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 57/214 (26%), Gaps = 54/214 (25%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL------ALHTIAQSQKTGGTCAF 100
            +++ S  LD  L     P   I E  G   SGKT +       +         G    +
Sbjct: 83  TITTHSPTLDRLLNK--IPTQAITEFAGESGSGKTQILLLLTLTVQLSPSRGGLGRPAVY 140

Query: 101 VDAEHALDSIYARKLGVDLKN---------------LLISQPDTGEQALEITDMLVRSGA 145
           +  E  L ++   ++   +                 ++ S  +T E  +     ++    
Sbjct: 141 ISTEAPLSTLRLIQMKNYISRDLPVGEQPTTDKVFSIVCSDLETQEHIIRYQLPVLVQKF 200

Query: 146 VDIIVIDSVAALTPRAEIEGDMGE-------------------------------SLPGM 174
              +V+    A   RAE E  M                                 S    
Sbjct: 201 NVGLVVIDSIAANFRAEFERPMNRNKKLRSSNTSTPSSSPSSSSTGAPSAGARHGSQMAQ 260

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           + + M +    L          +V  NQ+  K  
Sbjct: 261 RGKEMVRLAATLRHLAINHNLAVVVSNQVSDKFT 294


>gi|195501628|ref|XP_002097874.1| GE24233 [Drosophila yakuba]
 gi|194183975|gb|EDW97586.1| GE24233 [Drosophila yakuba]
 gi|209946338|gb|ACI97400.1| spindle B [Drosophila yakuba]
          Length = 341

 Score = 41.8 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 81/238 (34%), Gaps = 25/238 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGGT---CA 99
             VS G   LD   G G   +G I E+ G    GKT L L      Q   + GG     A
Sbjct: 86  SRVSFGCSALDRCTGGGVVARG-ITELCGAAGVGKTQLLLQLCLCVQLPRELGGLDKGVA 144

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           ++  E A  +    ++    +             + + +  V +  +   VI+ +  L  
Sbjct: 145 YICTESAFPARRLLQMSKACERRHPQMQLNFLGNIFV-ENHVEAETLLACVINRIPRLMQ 203

Query: 160 RAEIEGDMGESLPG---------MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +  I   + +S+            +AR M +    L S   +  C +V +NQ+  + G  
Sbjct: 204 QHGIGLIIIDSVAAIFRLYTDYLERARHMRRLADALLSYADKYNCAVVCVNQVTSRDG-- 261

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
               E    G         RL + RV     K    G+Q         + SP    +F
Sbjct: 262 --QDEIPCLGLQWAHLGRTRLRVSRVP----KQHRMGDQLITVRKLEILYSPETPNDF 313


>gi|81300261|ref|YP_400469.1| DNA repair protein RadA [Synechococcus elongatus PCC 7942]
 gi|81169142|gb|ABB57482.1| DNA repair protein RadA [Synechococcus elongatus PCC 7942]
          Length = 478

 Score = 41.8 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 54/154 (35%), Gaps = 16/154 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + ++SGS   D  LG GG   G +V I G    GK+TL L T     +          E 
Sbjct: 81  QRIASGSGEFDRVLG-GGLVPGSLVLIGGDPGIGKSTLLLQTATALSQQQPILYVCAEES 139

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQA---------LEITDMLVRSGAVDIIVIDSVAA 156
                  +++ +  + +   +                L+     + +    + +IDS+ A
Sbjct: 140 G------QQVKLRWQRIAAHRSPNQADQQFYLLPEIDLDAIVAELETLRPPVAIIDSIQA 193

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           L   A        +        + +  ++LT ++
Sbjct: 194 LYSPALGSAPGSVAQVRECTAALMRVAKQLTITL 227


>gi|56750114|ref|YP_170815.1| DNA repair protein RadA [Synechococcus elongatus PCC 6301]
 gi|56685073|dbj|BAD78295.1| DNA repair protein RadA [Synechococcus elongatus PCC 6301]
          Length = 478

 Score = 41.8 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 54/154 (35%), Gaps = 16/154 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + ++SGS   D  LG GG   G +V I G    GK+TL L T     +          E 
Sbjct: 81  QRIASGSGEFDRVLG-GGLVPGSLVLIGGDPGIGKSTLLLQTATALSQQQPILYVCAEES 139

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQA---------LEITDMLVRSGAVDIIVIDSVAA 156
                  +++ +  + +   +                L+     + +    + +IDS+ A
Sbjct: 140 G------QQVKLRWQRIAAHRSPNQADQQFYLLPEIDLDAIVAELETLRPPVAIIDSIQA 193

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           L   A        +        + +  ++LT ++
Sbjct: 194 LYSPALGSAPGSVAQVRECTAALMRVAKQLTITL 227


>gi|194360483|gb|ACF57889.1| disrupted meiotic cDNA 1 protein [Leymus paboanus]
          Length = 138

 Score = 41.8 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 51/150 (34%), Gaps = 18/150 (12%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N++ ++  T E    +       +      ++++DSV A           G      + 
Sbjct: 1   DNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIAPFR----VDFSGRGELAERQ 56

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR 234
           + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +R
Sbjct: 57  QKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           +           G Q   K+         +
Sbjct: 117 KGK---------GEQRVCKIFDAPNLPEGE 137


>gi|298248785|ref|ZP_06972590.1| DnaB domain protein helicase domain protein [Ktedonobacter
           racemifer DSM 44963]
 gi|297551444|gb|EFH85310.1| DnaB domain protein helicase domain protein [Ktedonobacter
           racemifer DSM 44963]
          Length = 380

 Score = 41.8 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
             + +  E +++G   LD  L  GG   G ++ + G E+ GK+TLAL+   +  K     
Sbjct: 108 ARVEQKEEQIATGYPDLDALL--GGLSGGEVIVLAGREAIGKSTLALNIAYRVAKENQNV 165

Query: 99  AFVDAEH 105
            +   +H
Sbjct: 166 VYFSLQH 172


>gi|260173645|ref|ZP_05760057.1| replicative DNA helicase [Bacteroides sp. D2]
 gi|315921908|ref|ZP_07918148.1| replicative DNA helicase [Bacteroides sp. D2]
 gi|313695783|gb|EFS32618.1| replicative DNA helicase [Bacteroides sp. D2]
          Length = 459

 Score = 41.8 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 53/168 (31%), Gaps = 18/168 (10%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQ-------------GSIFEGIEVVSS 50
            + M+I D        L +++  +G    M+   +              +   G+  + +
Sbjct: 129 DETMDIDDSLVDAHNLLDRLEGEFGHNNHMRDMDELMTATMVEAEGRIANNKNGVTGLPT 188

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE---HAL 107
           G   LD      G  KG +V +      GKT  ALH    +   G   A    E     L
Sbjct: 189 GLADLDRM--TSGLQKGELVVVAARPGIGKTAFALHMARSAAMAGYAVAVYSLEMQGERL 246

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
              +   +         S   + ++ +E          + I V DS +
Sbjct: 247 ADRWLTAVSEISARHWRSGTVSQQELVEARTTAADLKRLPIHVDDSTS 294


>gi|11498129|ref|NP_069354.1| hypothetical protein AF0518 [Archaeoglobus fulgidus DSM 4304]
 gi|2650101|gb|AAB90714.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 236

 Score = 41.8 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +++V +G L LD  LG GG P G +V ++    +G   L+ H   +    G    ++  +
Sbjct: 1   MKLVKTGILPLDTQLG-GGMPAGSVVSVFEEPGAGADVLSYHFTVEGATHGENVFYLATD 59

Query: 105 HALDSIYA 112
            + + I  
Sbjct: 60  DSSEEIRE 67


>gi|222106612|ref|YP_002547403.1| hypothetical protein Avi_5592 [Agrobacterium vitis S4]
 gi|221737791|gb|ACM38687.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 480

 Score = 41.8 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 55/158 (34%), Gaps = 6/158 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G  GLD  L  GG P   +  + G   SGKTT A+  +    + G +C +V    +  
Sbjct: 11  STGIAGLDEIL-RGGLPLPNLFMLQGAPGSGKTTAAIQFLRAGVEAGESCLYVTLSQSAA 69

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            + +  +         +      + L  T  +  +    I +   +     R  IE  + 
Sbjct: 70  ELRSIAVS-----HGWTLDGIHVEELSTTGSIDEADEQSIFMTADLRLDETRKAIEAAID 124

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           E  P          +R +T    R +  L+       K
Sbjct: 125 EHKPQRLVYDSLLEIRLITGDSPRFRRELIGFKSFLSK 162


>gi|254386484|ref|ZP_05001787.1| DNA repair protein RadA [Streptomyces sp. Mg1]
 gi|194345332|gb|EDX26298.1| DNA repair protein RadA [Streptomyces sp. Mg1]
          Length = 471

 Score = 41.8 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 5/129 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G +V + G    GK+TL L   A++        +V  E +  
Sbjct: 77  STGVDELDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDAHRTLYVTGEESAS 135

Query: 109 SIYARKLGVD-LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
            +  R   ++ L + L    +T    L      + +    ++V+DSV  +          
Sbjct: 136 QVRLRADRINALSDHLYLAAETD---LSAVLGHLDAVKPSLLVLDSVQTVASPEIDGAPG 192

Query: 168 GESLPGMQA 176
           G +     A
Sbjct: 193 GMAQVREVA 201


>gi|169335168|ref|ZP_02862361.1| hypothetical protein ANASTE_01575 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257906|gb|EDS71872.1| hypothetical protein ANASTE_01575 [Anaerofustis stercorihominis DSM
           17244]
          Length = 369

 Score = 41.8 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 77/220 (35%), Gaps = 8/220 (3%)

Query: 3   YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGS---QGSIFEGIEVVSSGSLGLDIAL 59
           Y +++   DK KA +   + I+    K    +                + +G   LD  L
Sbjct: 20  YVEDITEEDKKKA-DKYRADIEEYNLKSEYHRAKDFYTDIKNSINKPYIPTGFYNLDQEL 78

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
             GG  +G I  I    S GKTT  L    Q  +      F+  E + + + A+ +  + 
Sbjct: 79  -DGGLKEG-IYFIGAISSLGKTTFCLQLAYQMARQNQDVLFISLEQSANELRAKSISRNT 136

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD--MGESLPGMQAR 177
             L        + A  ITD    S   +        AL+   E   +  + ES+     +
Sbjct: 137 YILSGVSKHLAKSANIITDYEKISKFNEFEKELYFNALSLYREESRNLFIIESVYNYGVK 196

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
            + + ++K     ++   + +   Q+   I   +   + T
Sbjct: 197 ELEEDIKKHIDFRNKKPVVFIDYVQILSPINDRYTDKQNT 236


>gi|73966610|ref|XP_867105.1| PREDICTED: similar to RAD51 homolog C isoform 1 isoform 4 [Canis
           familiaris]
          Length = 231

 Score = 41.8 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 7/66 (10%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           + +    LD  LG GG P  +  EI G    GKT L +      Q         G   F+
Sbjct: 91  IITFCSALDNILG-GGIPLTKTTEICGVPGVGKTQLCMQLAVDVQIPECFGGVEGEAVFI 149

Query: 102 DAEHAL 107
           D E + 
Sbjct: 150 DTEGSF 155


>gi|329850585|ref|ZP_08265430.1| circadian clock protein kinase kaiC [Asticcacaulis biprosthecum
           C19]
 gi|328840900|gb|EGF90471.1| circadian clock protein kinase kaiC [Asticcacaulis biprosthecum
           C19]
          Length = 581

 Score = 41.8 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGGTCAFVDAEHA 106
           +G  GLD   G GG P GR   + G    GKT LA+  + +        G     +   A
Sbjct: 17  TGIDGLDEITG-GGLPTGRPTLVCGSAGCGKTMLAMEFLVRGATEFDEPGVFMMFEENAA 75

Query: 107 LDSIYARKLGVDLKNLLISQ 126
             +   R LG DL+ L+  +
Sbjct: 76  ELTANVRSLGFDLEGLISEK 95



 Score = 40.6 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 69/225 (30%), Gaps = 10/225 (4%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
             + V +G   LD  LG  G  +G  V + G   +GK+++A   I  + K G    F   
Sbjct: 252 STKRVPTGIERLDEMLGGQGVFQGSSVLVSGSSGTGKSSIAAKFIETACKRGERALFFAY 311

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E +   I      VD+            Q       L       +++ D+V +  P   +
Sbjct: 312 EESAAQIVRNMRSVDIDLQPWID-RGLLQIHSSRPTLQGLEQHLVLMHDAVQSFRPTVVV 370

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
              +           +   L +L   + + +   VF + +     V           + +
Sbjct: 371 VDPISNLTLADDDSEVKPTLMRLIDFLKKEQITAVFTSLITSGDAVSAPEDTLLGVSSLM 430

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
             +  +R                 N+T        MA   +  EF
Sbjct: 431 DTWLLLRNVEFTGER---------NRTIFVRKSRGMAHSNQVREF 466


>gi|291535039|emb|CBL08151.1| DNA primase (bacterial type) [Roseburia intestinalis M50/1]
          Length = 623

 Score = 41.8 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 75/232 (32%), Gaps = 15/232 (6%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKLGVDLKN 121
            P G++  I G    GKT  A+   A              E    +       LG  +K 
Sbjct: 326 IPFGKLTIIQGNPGEGKTYFAMRLAAACTNRKPLPGMETLEPFNIIYQTAEDGLGDTVKP 385

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD----MGESLPGMQAR 177
            L+      E+ L I D        D  +  ++     R  I       +G  +   +A 
Sbjct: 386 RLMEAEADLERVLVIDDRDTPLTLADERIARAIRENNARLVIIDPVQAFLGTDVDMNRAN 445

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
            +    R L      + C +V I  +    G          G  ++   ++VR  +  +G
Sbjct: 446 EVRPIFRSLGDIAQATGCAIVLIGHLNKAAGTQSTYR----GLGSIDITAAVRSLLF-IG 500

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
            +KD  +       +   K+ +A P + + F +   +G  + G       + 
Sbjct: 501 KLKDSPTT----RVLIHEKSSLAPPGQSLAFSLGDEKGFEWIGAYDITADEL 548


>gi|111225863|ref|YP_716657.1| DNA repair protein RadA [Frankia alni ACN14a]
 gi|111153395|emb|CAJ65151.1| putative ATP-dependent protease, with nucleoside triP hydrolase and
           multiheme cytochrome domains, DNA repair protein
           [Frankia alni ACN14a]
          Length = 485

 Score = 41.8 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 48/138 (34%), Gaps = 3/138 (2%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +G   LD  LG GG   G ++ + G    GK+TL L   A+S   G     V  E +  
Sbjct: 100 PTGIDELDRVLG-GGLVPGAVILLAGEPGVGKSTLLLEVAARSAAGGARALVVTGEESAA 158

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +  R        L        E  L      V   +  ++V+DSV  ++         G
Sbjct: 159 QVRLRA--GRTGALHEDLWIAAETDLGAVLRHVEEVSPALLVVDSVQTISAAGVEGAAGG 216

Query: 169 ESLPGMQARLMSQALRKL 186
            +        + +  + L
Sbjct: 217 VTQVREVTAALIRTAKAL 234


>gi|86742933|ref|YP_483333.1| DNA repair protein RadA [Frankia sp. CcI3]
 gi|86569795|gb|ABD13604.1| DNA repair protein RadA [Frankia sp. CcI3]
          Length = 485

 Score = 41.8 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 48/138 (34%), Gaps = 3/138 (2%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +G   LD  LG GG   G ++ + G    GK+TL L   A+S   G     V  E +  
Sbjct: 100 PTGIDELDRVLG-GGLVPGAVILLAGEPGVGKSTLLLEVAARSAAAGARALVVTGEESAA 158

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +  R        L        E  L      V   +  ++V+DSV  ++         G
Sbjct: 159 QVRLRA--GRTGALHEDLWIAAETDLGAVLRHVEEVSPALLVVDSVQTISAAGVDGAAGG 216

Query: 169 ESLPGMQARLMSQALRKL 186
            +        + +  + L
Sbjct: 217 VTQVREVTAALIRTAKAL 234


>gi|91773735|ref|YP_566427.1| hypothetical protein Mbur_1789 [Methanococcoides burtonii DSM 6242]
 gi|91712750|gb|ABE52677.1| KaiC domain-containing protein [Methanococcoides burtonii DSM 6242]
          Length = 254

 Score = 41.8 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            V +G + LD+ LG GG P G  + +     S     A   I    K      +  AEH 
Sbjct: 12  RVPTGVVSLDVQLG-GGVPPGTTILLLAEPGSSAEVFAQQFIYGGLKNHEDVYYFSAEHP 70

Query: 107 LDSIY--ARKLGVDLKN 121
           +  I    +  G +++ 
Sbjct: 71  IQEIVEDMKNFGWNIEK 87


>gi|298675640|ref|YP_003727390.1| putative circadian clock protein KaiC [Methanohalobium evestigatum
           Z-7303]
 gi|298288628|gb|ADI74594.1| putative circadian clock protein, KaiC [Methanohalobium evestigatum
           Z-7303]
          Length = 458

 Score = 41.8 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 72/221 (32%), Gaps = 14/221 (6%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
            + + FE  + + SG  G D  LG  G PK   + I G   +GKT  +L  I      G 
Sbjct: 228 DENTEFEDTK-IESGIKGFDPLLGD-GIPKASSILIEGEPGTGKTIFSLQYIMNGLINGE 285

Query: 97  TCAFVDAEHALDSIYARK--LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
            C  V  E     I       G +L++ +               + V     +  +  +V
Sbjct: 286 PCIIVTYEEIPQQIILEASKFGWNLQSYIDEGVLKFIYT---NPVDVHPAKHESFIKSNV 342

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
             +  +  +   +      +Q  +  +   +   +  +SK +        +      G  
Sbjct: 343 EEMGAKRIVFDGIVNMEMTIQDPIKLRGHFQAVINYLKSKNVTSLFTTEILP-----GKE 397

Query: 215 ETTTGGNALKFYSSVRL--DIRRVGSIKDKDSITGNQTRVK 253
           E TT  +A      V +    +    IK+   I  ++    
Sbjct: 398 EITTSHDASFIMDIVVVMEYTKSSEQIKNNLHIMKSRRTSH 438


>gi|222099461|ref|YP_002534029.1| DNA repair protein RadA [Thermotoga neapolitana DSM 4359]
 gi|221571851|gb|ACM22663.1| DNA repair protein RadA [Thermotoga neapolitana DSM 4359]
          Length = 440

 Score = 41.8 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 92/260 (35%), Gaps = 37/260 (14%)

Query: 17  EAALSQIQRV--YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74
           + A   +++    GK ++  L  + +    ++ +++G   +D     GGF  G+++ + G
Sbjct: 27  DTAEEILEKKGREGKPSLF-LNLEVAGEVSLQRIATGFSEMDRVF-KGGFIPGQVILLSG 84

Query: 75  PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG---- 130
               GK+TLAL       ++G                 ++L +    L I          
Sbjct: 85  EPGIGKSTLALQLAETFAQSGLVVYI------SGEESPQQLKMRADRLAIRGKKNILLAV 138

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           E  LE    +++   V  +++DS+  +   +E+    G          +     K+ +  
Sbjct: 139 ENDLEELIPVLQREKVKFVIVDSLQTVFS-SELGSSPG------SISQVKNVTMKMINFA 191

Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250
            +    ++ I  +  +  +         G   ++                + D  TG + 
Sbjct: 192 KKKNVPVLLIGHVTKEGEI--------AGPKLVEHMVDTVAYF-------EGDRRTGLRL 236

Query: 251 RVKVVKNKMASPFKQVEFDI 270
            +K+ KN+     +   F++
Sbjct: 237 -LKITKNRFGPSDEVAVFEL 255


>gi|76802979|ref|YP_331074.1| KaiC-like transcriptional regulator 1 [Natronomonas pharaonis DSM
           2160]
 gi|76558844|emb|CAI50438.1| probable KaiC-like transcriptional regulator 1 [Natronomonas
           pharaonis DSM 2160]
          Length = 496

 Score = 41.8 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
              +   G++ V++G   LD   G GGF  G    I GP   GKTT+  + +  + + G 
Sbjct: 238 ESPAERRGLDPVATGVGELDSLTG-GGFEHGTTTFISGPPGVGKTTVGAYFLFWAAQQGE 296

Query: 97  TCAFVDAEHAL--DSIYARKLGVDLKNLLI 124
           T A    E  +       R +G+ +  L  
Sbjct: 297 TAAVYLFEERIETFEKRCRAIGLPIDALRD 326



 Score = 40.2 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 63/332 (18%), Positives = 107/332 (32%), Gaps = 53/332 (15%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SG +GL+  L  GG+ + R+  I G   +GKTTL  H +      G T  FV  E +   
Sbjct: 13  SGVVGLNQLL-RGGYLRNRMYLIVGTHGTGKTTLCSHFVEAGLDAGETALFVHGEESASE 71

Query: 110 IYARKLGVDLK----------------------NLLISQPDTGEQALEITDMLVRSGAVD 147
           +        +                       +L+ +    G++  E     +     D
Sbjct: 72  LRENAAQFGIDIAGAEFLDLGPDSAFFEKDETYDLVDASEVEGKRYTEQIREAITEIDPD 131

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
            +VID +  L    E              R + +    +  + S S       +++    
Sbjct: 132 RLVIDPITQLRYI-EASDYHYRKRVLSLIRFLKEHEITVLGTTSVSDTHSTA-SEILSIS 189

Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267
             +     + TG         + ++  R    +        +     V  K+  P    E
Sbjct: 190 DGVVRLSRSETGRR-------IEVEKNRGRGQQSGTHGVEIRAHGVEVFPKLTPPESPAE 242

Query: 268 ---FDIMYGEGISFFGELIDLGVKASI---------VDKS--GAWFSFKGQRLGQGRENS 313
               D +   G+     L   G +            V K+  GA+F F   +  QG E +
Sbjct: 243 RRGLDPV-ATGVGELDSLTGGGFEHGTTTFISGPPGVGKTTVGAYFLFWAAQ--QG-ETA 298

Query: 314 KIFLRENIEIAENIESLLRQNAGLVADSLLQE 345
            ++L E  E  E  E   R   GL  D+L  +
Sbjct: 299 AVYLFE--ERIETFEKRCR-AIGLPIDALRDD 327


>gi|322489223|emb|CBZ24478.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 520

 Score = 41.8 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 65/189 (34%), Gaps = 26/189 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS------QKTGGTCAFV 101
           + +G   LD AL +GG  +G + E+ G   +GKTTLA                   C ++
Sbjct: 147 LPTGLRSLDAAL-LGGLRRGWVTELTGLPGTGKTTLAAAWCRSCLRHARSCGATHDCVWL 205

Query: 102 DAEHALDSIYARKLGVDL---------KNLLISQPDTGEQALEITDMLVRSG-------A 145
            +  A+ S        +            + ++     +   ++ D    +         
Sbjct: 206 QSGSAVHSAVLAIAHEEPDATELPPLADAVHVACLSNLDGLQQLLDRWQGTEVSASPLST 265

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
           V +IV+DS+  L  R+       +     +   ++  L+ L       +  ++ I Q + 
Sbjct: 266 VGLIVLDSITDLMRRSF---RFEDDDALQRHEALATTLQSLKRLAEEQRVAVLVITQQQR 322

Query: 206 KIGVMFGSP 214
                FG  
Sbjct: 323 HPWPAFGQS 331


>gi|315231432|ref|YP_004071868.1| hypothetical protein TERMP_01670 [Thermococcus barophilus MP]
 gi|315184460|gb|ADT84645.1| hypothetical protein TERMP_01670 [Thermococcus barophilus MP]
          Length = 254

 Score = 41.8 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 56/164 (34%), Gaps = 7/164 (4%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG-- 96
             I + +E V +G +     L +GG PKG +V + G   SGKTT  +     +Q TGG  
Sbjct: 10  EDIEKRVERVPTGII---DDLIMGGIPKGSVVLLIGDPKSGKTTF-ISQFVHTQLTGGYS 65

Query: 97  -TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
                VD         A   G D    L       +   +      +    + +V D   
Sbjct: 66  TIGILVDIPKYEFVSNALDFGWDFMPYLEENFFILDAYSQRLRGTPKFSFDEAVVTDIRD 125

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
                  I+    + L      +++  +  LT     +    ++
Sbjct: 126 TTQLIDAIKDVTLKILSEKNPPMITGIISSLTPIFFETDKKQIY 169


>gi|296450761|ref|ZP_06892513.1| toprim domain protein [Clostridium difficile NAP08]
 gi|296260383|gb|EFH07226.1| toprim domain protein [Clostridium difficile NAP08]
          Length = 573

 Score = 41.8 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 75/232 (32%), Gaps = 15/232 (6%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKLGVDLKN 121
            P G++  + G    GKTT AL   A              E    +       LG  +K 
Sbjct: 269 IPFGKVTIVQGNPGEGKTTFALRLAAACTNRKPFPHMAVHEPFNVIYQTAEDGLGDTIKP 328

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM----GESLPGMQAR 177
            L+      ++ L I +        D  +  ++     R  I   +    GE     +A 
Sbjct: 329 RLMEAEADLDRILVIDESKQGLSLSDERIERAIRQTGARLIILDPIQAYVGEKTDMNKAN 388

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
            +    R+L     R+ C ++ I    +       S     G    +  +   L I R  
Sbjct: 389 EIRPMFRRLAEIAERTGCAVILI--GHLNKAAGGQSAYRGLGSIDFRAAARSVLLIGR-- 444

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
            +K + ++      +   K+ +A   K + F +    G S+ GE      + 
Sbjct: 445 -VKREPNV----RVIVHDKSSLAPEGKPIAFCLDPETGFSWIGEYDITADEL 491


>gi|289811574|ref|ZP_06542203.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 84

 Score = 41.8 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 4/83 (4%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 4   VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 60

Query: 92  QKTGGTCAFVDAEHALDSIYARK 114
            +      +V  E +L  +  R 
Sbjct: 61  AEQ-MKTLYVTGEESLQQVAMRA 82


>gi|86143756|ref|ZP_01062132.1| putative DNA repair protein [Leeuwenhoekiella blandensis MED217]
 gi|85829799|gb|EAQ48261.1| putative DNA repair protein [Leeuwenhoekiella blandensis MED217]
          Length = 453

 Score = 41.8 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 56/192 (29%), Gaps = 20/192 (10%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
            L+  LG GG   G +  + G    GK+TL L           T  +V  E +   I  R
Sbjct: 79  ELNRVLG-GGLVPGSLTLLGGEPGIGKSTLMLQIALTLPY---TTLYVSGEESAQQIKMR 134

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
                +     +     E   +     V     DI++IDS+  L       G    S   
Sbjct: 135 A--ERINPTAENCLILTETKTQNIFKQVEEVNPDIVIIDSIQTLHSDYIESGAGSISQIR 192

Query: 174 MQARLMSQALRKLTSSISRSKCILVFI-------NQMRMKIGVMFGSPETTTGGNALKFY 226
                      +L      +   ++ I       N    KI            G+    Y
Sbjct: 193 E-------TTTELIKFAKETATPVILIGHITKDGNIAGPKILEHMVDTVLQFEGDRNHVY 245

Query: 227 SSVRLDIRRVGS 238
             +R    R GS
Sbjct: 246 RILRAHKNRFGS 257


>gi|190410498|ref|YP_001965318.1| putative primase-helicase [Streptococcus thermophilus]
 gi|84316429|gb|ABC55705.1| putative primase-helicase [Streptococcus thermophilus]
          Length = 691

 Score = 41.8 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 62/212 (29%), Gaps = 22/212 (10%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK K LE +     + +  G         +       +S+G   LD AL  GG  +G  +
Sbjct: 342 DKEKYLETSTDNYIQDFLDGI--------ADSVNTPCISTGFAMLDEAL-DGGLYEGLYI 392

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL-----------GVDL 119
            +    S GKTTL      Q    G        E A   I A+ +           G D 
Sbjct: 393 -VGAISSLGKTTLVTQIADQVASKGQDVLIFSLEMARSEIMAKSISRHTIMEVLQTGEDT 451

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDII-VIDSVAALTPRAEIEGDMGESLPGMQARL 178
           KN    +  T     E  +   +    + +      A      E  GD+G          
Sbjct: 452 KNAKTVRGVTSGNRYEKYNSTEKELIKNAVQTYSGYAKHIYITEGIGDLGAQQIRETVEK 511

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
            ++        I     IL   N+        
Sbjct: 512 HTRYTGNTPLIIVDYLQILAPYNERATDKQNT 543


>gi|319793111|ref|YP_004154751.1| hypothetical protein Varpa_2440 [Variovorax paradoxus EPS]
 gi|315595574|gb|ADU36640.1| hypothetical protein Varpa_2440 [Variovorax paradoxus EPS]
          Length = 268

 Score = 41.4 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 2/98 (2%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEI--YGPESSGKTTLALHTIAQSQKTGGTCAFV 101
             +VV++G   LD  L  GG+P G + E+    PE+     L        +  GG    +
Sbjct: 27  DAQVVATGHAALDAELPGGGWPVGAMTELLQSAPEAHVWRLLLPALAQAVEARGGPVVLI 86

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
            A +          G+ ++ L+  + D     L   + 
Sbjct: 87  GAPYEPCGPSLAAQGLPVEALMWIKSDAPPARLWACEQ 124


>gi|291562190|emb|CBL41006.1| DNA primase (bacterial type) [butyrate-producing bacterium SS3/4]
          Length = 623

 Score = 41.4 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 75/232 (32%), Gaps = 15/232 (6%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKLGVDLKN 121
            P G++  I G    GKT  A+   A              E    +       LG  +K 
Sbjct: 326 IPFGKLTIIQGNPGEGKTYFAMRLAAACTNRKPLPGMETIEPFNIIYQTAEDGLGDTVKP 385

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD----MGESLPGMQAR 177
            L+      E+ L I D        D  +  ++     R  I       +G  +   +A 
Sbjct: 386 RLMEADADLERVLVIDDRDTPLTLADERIARAIRENNARLVIIDPVQAFLGADVDMNRAN 445

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
            +    R L      + C +V I  +    G          G  ++   ++VR  +  +G
Sbjct: 446 EVRPIFRSLGDIAQATGCAIVLIGHLNKAAGTQSTYR----GLGSIDITAAVRSLLF-IG 500

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
            +KD  +       +   K+ +A P + + F +   +G  + G       + 
Sbjct: 501 KLKDSPTT----RVLIHEKSSLAPPGQSLAFSLGDEKGFEWIGAYDITADEL 548


>gi|291545588|emb|CBL18696.1| DNA primase (bacterial type) [Ruminococcus sp. SR1/5]
          Length = 623

 Score = 41.4 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 75/232 (32%), Gaps = 15/232 (6%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKLGVDLKN 121
            P G++  I G    GKT  A+   A              E    +       LG  +K 
Sbjct: 326 IPFGKLTIIQGNPGEGKTYFAMRLAAACTNRKPLPGMETIEPFNIIYQTAEDGLGDTVKP 385

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD----MGESLPGMQAR 177
            L+      E+ L I D        D  +  ++     R  I       +G  +   +A 
Sbjct: 386 RLMEADADLERVLVIDDRDTPLTLADERIARAIRENNARLVIIDPVQAFLGADVDMNRAN 445

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
            +    R L      + C +V I  +    G          G  ++   ++VR  +  +G
Sbjct: 446 EVRPIFRSLGDIAQATGCAIVLIGHLNKAAGTQSTYR----GLGSIDITAAVRSLLF-IG 500

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
            +KD  +       +   K+ +A P + + F +   +G  + G       + 
Sbjct: 501 KLKDSPTT----RVLIHEKSSLAPPGQSLAFSLGDEKGFEWIGAYDITADEL 548


>gi|291524638|emb|CBK90225.1| DNA primase (bacterial type) [Eubacterium rectale DSM 17629]
          Length = 623

 Score = 41.4 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 75/232 (32%), Gaps = 15/232 (6%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKLGVDLKN 121
            P G++  I G    GKT  A+   A              E    +       LG  +K 
Sbjct: 326 IPFGKLTIIQGNPGEGKTYFAMRLAAACTNRKPLPGMETIEPFNIIYQTAEDGLGDTVKP 385

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD----MGESLPGMQAR 177
            L+      E+ L I D        D  +  ++     R  I       +G  +   +A 
Sbjct: 386 RLMEADADLERVLVIDDRDTPLTLADERIARAIRENNARLVIIDPVQAFLGADVDMNRAN 445

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
            +    R L      + C +V I  +    G          G  ++   ++VR  +  +G
Sbjct: 446 EVRPIFRSLGDIAQATGCAIVLIGHLNKAAGTQSTYR----GLGSIDITAAVRSLLF-IG 500

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
            +KD  +       +   K+ +A P + + F +   +G  + G       + 
Sbjct: 501 KLKDSPTT----RVLIHEKSSLAPPGQSLAFSLGDEKGFEWIGAYDITADEL 548


>gi|119504400|ref|ZP_01626480.1| hypothetical protein MGP2080_00970 [marine gamma proteobacterium
           HTCC2080]
 gi|119459908|gb|EAW41003.1| hypothetical protein MGP2080_00970 [marine gamma proteobacterium
           HTCC2080]
          Length = 247

 Score = 41.4 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 71/187 (37%), Gaps = 9/187 (4%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFP-KGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
            S   G++V+ +G   LD  + + G+P +G +  +     +    L L T+A   +    
Sbjct: 32  NSDLHGVDVLPTGFNALDAQIAMAGWPLRGGVEVLSKDSGTDSMGLFLPTMAALSEQRRW 91

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            AF+   HA  +      GV  + +L+  P   E+ L  T+  +RS    ++     A+ 
Sbjct: 92  QAFIAPPHAPYAPLLAARGVATEQVLMVHPKDREELLWATEQAIRSTTCSVVFSWLGASD 151

Query: 158 TPRAEIEG---DMGESLPGMQARLMSQALRKLTS-----SISRSKCILVFINQMRMKIGV 209
              AE+        E+   +     +QA+ + T      +I R   + +   +       
Sbjct: 152 YRYAELRKLQLAATENDTLVVLFRATQAIEQHTPFSLRLTIDRYHTVDILKQRGGRPANN 211

Query: 210 MFGSPET 216
           +    E 
Sbjct: 212 IKLPDEE 218


>gi|87301813|ref|ZP_01084647.1| DNA repair protein RadA [Synechococcus sp. WH 5701]
 gi|87283381|gb|EAQ75336.1| DNA repair protein RadA [Synechococcus sp. WH 5701]
          Length = 475

 Score = 41.4 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 9/153 (5%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            ++ +++G   LD  LG GG   G +V + G    GK+TL L +     +   +  +V A
Sbjct: 74  PLQRLATGFPELDRVLG-GGLVPGSLVLVGGDPGIGKSTLLLQSARALAEA-CSVLYVSA 131

Query: 104 EHALDSI--YARKLGVDLKNLLISQPDTGEQA----LEITDMLVRSGAVDIIVIDSVAAL 157
           E +   +    R+LG +      S     +      LE+    + +    + +IDS+ AL
Sbjct: 132 EESAQQVKLRWRRLGPEEGAEGASDQAGLQLLAETDLELVLQELEALRPAVAIIDSIQAL 191

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
              AE+    G            Q L K   + 
Sbjct: 192 H-DAELSSAPGSVSQVRDCAAALQRLAKRQDTA 223


>gi|255513564|gb|EET89830.1| putative circadian clock protein, KaiC [Candidatus Micrarchaeum
           acidiphilum ARMAN-2]
          Length = 243

 Score = 41.4 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + +G  GLD  LG GG PK   + + G   +GKT ++   I ++   G   A    E 
Sbjct: 3   EKIETGIDGLDSLLG-GGIPKRNQMLLAGGPGAGKTLISFEYIYRNALAGKKSAMFSIEE 61

Query: 106 ALDSIYARK 114
             + I    
Sbjct: 62  TSEMIIENA 70


>gi|326931312|ref|XP_003211776.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein RAD51 homolog
           4-like [Meleagris gallopavo]
          Length = 316

 Score = 41.4 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 62/216 (28%), Gaps = 27/216 (12%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL-----------HT 87
             +     ++ +GS  LD  L   G   G + E+ G   S    + L             
Sbjct: 55  EELKSSTAILPTGSPSLDQLL-DAGLYTGEVTELAGXXXSKLLQVCLSIAANVSLGLRQH 113

Query: 88  IAQSQKTGGTCAF----VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
           +      GG  A     +      D     +    ++ + +       +AL      V  
Sbjct: 114 VVFLDSXGGFTASRLYQMLQARVEDREEQMEALQRVQVVRVFDIYEMLRALHEVRDCVAQ 173

Query: 144 GAV-DIIVIDSVAALTPRAEIEGDMGESL-------PGMQARLMSQALRKLTSSISRSKC 195
               D ++    +A   +A +   +   L             +M Q  R+L +       
Sbjct: 174 YCTVDFVLQVESSAGLLKAVLIDSVSAVLSPLLGGRQSEGLAIMMQLARELKTLAKEFSV 233

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231
            ++  NQ+             +  G +  F  S R+
Sbjct: 234 AVLVTNQVTRDNST---GALKSALGRSWSFVPSTRV 266


>gi|147676620|ref|YP_001210835.1| DNA repair protein RadA [Pelotomaculum thermopropionicum SI]
 gi|146272717|dbj|BAF58466.1| predicted ATP-dependent serine protease [Pelotomaculum
           thermopropionicum SI]
          Length = 450

 Score = 41.4 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 66/191 (34%), Gaps = 12/191 (6%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E   +G   +D  LG GG   G +V + G    GK+TL L    +         +V  E 
Sbjct: 65  ERFPTGFGEVDRVLG-GGVVPGSLVLVGGDPGIGKSTLMLQVACRL-SLDMRVLYVSGEE 122

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +      R     L  L        E  +++ +  +R  A  + +IDS+  +        
Sbjct: 123 S--PRQVRLRAGRLGTLSSGLFLVSETDIDVVERHLRELAPPVAIIDSIQTMYKADVASA 180

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
                     A  + +        ++++  + VF+     K GV+ G        +A+ +
Sbjct: 181 PGSVGQVRECAAQLMR--------LAKTTGMSVFLVGHVTKEGVLAGPRVLEHMVDAVLY 232

Query: 226 YSSVRLDIRRV 236
               R    R+
Sbjct: 233 LEGDRHHFFRI 243


>gi|302530713|ref|ZP_07283055.1| DNA repair protein RadA [Streptomyces sp. AA4]
 gi|302439608|gb|EFL11424.1| DNA repair protein RadA [Streptomyces sp. AA4]
          Length = 453

 Score = 41.4 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   LD  LG GG   G +  + G    GK+TL L    Q   T G   +V  E +   
Sbjct: 72  TGVPELDRVLG-GGLVPGAVALLAGEPGVGKSTLLLEVAYQWAVTAGRSLYVTGEESAGQ 130

Query: 110 IYARK 114
           +  R 
Sbjct: 131 VRLRA 135


>gi|196230440|ref|ZP_03129302.1| putative circadian clock protein, KaiC [Chthoniobacter flavus
           Ellin428]
 gi|196225370|gb|EDY19878.1| putative circadian clock protein, KaiC [Chthoniobacter flavus
           Ellin428]
          Length = 495

 Score = 41.4 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G  GLD  L  GG P  R   I G    GKTTL++  + + ++ G    +V      D 
Sbjct: 11  TGIEGLDHVLA-GGLPPNRFYLILGDPGVGKTTLSIQFLLEGKRQGERTLYVTLSETRDE 69

Query: 110 --IYARKLGVDLKNLLISQPDTGEQAL 134
               AR  G  L+ + I +     Q L
Sbjct: 70  LTEVARSHGWSLEGIDIVELSAIAQQL 96


>gi|23630193|gb|AAL16332.1| KaiC [Nodularia cf. spumigena]
          Length = 208

 Score = 41.4 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 22/149 (14%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT--- 94
             +   G+E + +   G D  +  GG P GR   + G   +GKT L+L  +         
Sbjct: 10  NNTPIAGVEKIRTMIEGFDD-ISHGGLPIGRTTLVSGTSGTGKTLLSLQFLYNGITRFDE 68

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLIS------QPDTGEQALEI------------ 136
            G     +   +     A+  G +L+ L+              +  +I            
Sbjct: 69  AGVFVTFEESPSDIIKNAQIFGWNLQRLIDEGKLFILDASPDPEGQDIVGNFDLSALIER 128

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
               +R      + IDS+ A+  + E  G
Sbjct: 129 LQYAIRKYKAQRVSIDSITAVFQQYEAMG 157


>gi|255691776|ref|ZP_05415451.1| replicative DNA helicase [Bacteroides finegoldii DSM 17565]
 gi|260622492|gb|EEX45363.1| replicative DNA helicase [Bacteroides finegoldii DSM 17565]
          Length = 459

 Score = 41.4 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 67/229 (29%), Gaps = 40/229 (17%)

Query: 18  AALSQIQRVYGKG----AIMQLGSQ---------GSIFEGIEVVSSGSLGLDIALGIGGF 64
             L Q+++  G      +++QL             S   G+  + +G   L+      G+
Sbjct: 141 TLLDQLEKECGMSEHLRSMLQLMEDTVELIETRVASNKNGVTGLPTGFNELNRL--TCGW 198

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE---HALDSIYARKLGVDLKN 121
             G ++ +    S GKT  ALH    +   G   A    E     L   +      ++  
Sbjct: 199 QPGDLIIVAARPSVGKTAFALHLARAAASAGYHIAVYSLEMQGERLGDRWLLAATKEVSP 258

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA------------LTPRAE------- 162
             +         L          +   I ID   +            L  + +       
Sbjct: 259 AHLLSGALTPSELREVHEASTELSRLPIYIDDNPSVSMDYVRTSAKLLQSKGDCDCLFID 318

Query: 163 ---IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
              +     +     + + ++QA RK           ++ ++Q+   + 
Sbjct: 319 YLQLCDMKSDQHNRNREQEVAQASRKAKMIAKELHIPVILLSQLNRNVE 367


>gi|187918742|ref|YP_001887773.1| Non-specific serine/threonine protein kinase [Burkholderia
           phytofirmans PsJN]
 gi|187717180|gb|ACD18403.1| Non-specific serine/threonine protein kinase [Burkholderia
           phytofirmans PsJN]
          Length = 491

 Score = 41.4 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
             LD  LG GGF +G    + GP   GKT L L  +A     G  C ++
Sbjct: 253 PHLDGLLG-GGFAQGSTTTLVGPSGVGKTLLCLQFLAAGVARGERCLYL 300


>gi|50292459|ref|XP_448662.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527974|emb|CAG61625.1| unnamed protein product [Candida glabrata]
          Length = 337

 Score = 41.4 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 52/159 (32%), Gaps = 9/159 (5%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS--QKTGGTCAFVDAEH 105
           +S+G   LD  L  GGF      EIYG    GKT LA  T+     +   G   ++    
Sbjct: 18  ISTGLTALDNEL-DGGFRYKSSYEIYGIPGIGKTWLASETVKTYLQENDDGKVLWITTSG 76

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS-----VAALTPR 160
               +  R      + +   +     + L      V S    I    S     + +    
Sbjct: 77  VAPQMLLRSEAEVKERIEYIRITKFTELLYFYQKQVMSEPDSISQSQSPAESAMPSTGTE 136

Query: 161 AEIEGDM-GESLPGMQARLMSQALRKLTSSISRSKCILV 198
           A        +S   +    +S+ L     S+S+  C  +
Sbjct: 137 AITNDTNSNDSYRLVIIDGLSRLLNLQLHSLSKKNCTTL 175


>gi|170581392|ref|XP_001895663.1| DNA repair and recombination protein radB [Brugia malayi]
 gi|158597306|gb|EDP35488.1| DNA repair and recombination protein radB, putative [Brugia malayi]
          Length = 208

 Score = 41.4 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 2/117 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E++ +G   LD  LG GG   G  +EI G  ++GK+   ++   +          + A +
Sbjct: 17  ELLETGLQSLDALLG-GGISPGTFLEIVGLSATGKSQFCVYVDTEGGFHTKRICDI-ATN 74

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            L ++   +    ++            A+   ++LV+      +VI    A+  R E
Sbjct: 75  VLKTMEPLESLKHIQVSRCRDLVELTSAIHRLELLVQQNPKIGLVIVDSVAMPLRGE 131


>gi|260591188|ref|ZP_05856646.1| DNA repair protein RadA [Prevotella veroralis F0319]
 gi|260537053|gb|EEX19670.1| DNA repair protein RadA [Prevotella veroralis F0319]
          Length = 466

 Score = 41.4 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 5/131 (3%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
            L+  LG GG   G IV + G    GK+TL L TI    +      +V  E +   I  R
Sbjct: 90  ELNRVLG-GGLVPGSIVLLGGEPGIGKSTLTLQTILHLSQR---ILYVSGEESPHQIRMR 145

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
                 K++  +     E +LE     ++    ++IV+DS+  ++           +   
Sbjct: 146 A-ERITKDIPENIIILSETSLEHIFEHIKDVKPELIVVDSIQTISTEDVDSSPGSVTQVR 204

Query: 174 MQARLMSQALR 184
             A  + +  +
Sbjct: 205 ECASALLRFAK 215


>gi|56477173|ref|YP_158762.1| hypothetical protein ebA3084 [Aromatoleum aromaticum EbN1]
 gi|56313216|emb|CAI07861.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 225

 Score = 41.4 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 2/105 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVE-IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           V +G   LD  L  GG+P+G ++E +      G+  L L  +  +       A++   H 
Sbjct: 31  VPTGFPALDAQLPGGGWPRGALIELLIDAFGIGELALLLPALRAAAPE-RWIAWIAPPHL 89

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
             +      GV L  LL+  P      L      V SG   ++V 
Sbjct: 90  PYAPALAAAGVRLDRLLLLTPSDPATTLWTIRQAVASGGCSVVVA 134


>gi|78183891|ref|YP_376325.1| DNA repair protein RadA [Synechococcus sp. CC9902]
 gi|78168185|gb|ABB25282.1| DNA repair protein RadA [Synechococcus sp. CC9902]
          Length = 465

 Score = 41.4 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 8/118 (6%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + ++ + +GS   D  LG G  P G +V + G    GK+TL L + +       +  +V 
Sbjct: 70  QPLQRLPTGSSEFDRVLGSGLVP-GSLVLVGGDPGIGKSTLLLQSASAMAAH-SSVLYVS 127

Query: 103 AEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AE +   +    ++L  +  +L +      +  LE  + L       + +IDS+ AL 
Sbjct: 128 AEESAQQVKLRWQRLAGETSDLQLLAETDLDLVLEELEAL----RPAVAIIDSIQALH 181


>gi|312876878|ref|ZP_07736855.1| zinc finger CHC2-family protein [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311796393|gb|EFR12745.1| zinc finger CHC2-family protein [Caldicellulosiruptor lactoaceticus
           6A]
          Length = 607

 Score = 41.4 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 1/73 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           +  +V+ +G   LD  L  GG     +  I      GKTT  L  +    + G  C  + 
Sbjct: 329 KNSKVIPTGFKQLDEILN-GGLMPANVYVIGAKPGVGKTTFVLQLVDNLLQQGLECVVLS 387

Query: 103 AEHALDSIYARKL 115
           AE +++ +  R  
Sbjct: 388 AEMSIEELLTRIF 400


>gi|153810265|ref|ZP_01962933.1| hypothetical protein RUMOBE_00646 [Ruminococcus obeum ATCC 29174]
 gi|153813917|ref|ZP_01966585.1| hypothetical protein RUMTOR_00124 [Ruminococcus torques ATCC 27756]
 gi|145848313|gb|EDK25231.1| hypothetical protein RUMTOR_00124 [Ruminococcus torques ATCC 27756]
 gi|149833444|gb|EDM88525.1| hypothetical protein RUMOBE_00646 [Ruminococcus obeum ATCC 29174]
          Length = 623

 Score = 41.4 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 75/232 (32%), Gaps = 15/232 (6%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKLGVDLKN 121
            P G++  I G    GKT  A+   A              E    +       LG  +K 
Sbjct: 326 IPFGKLTIIQGNPGEGKTYFAMRLAAACTNRKPLPGMETLEPFNIIYQTAEDGLGDTVKP 385

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD----MGESLPGMQAR 177
            L+      E+ L I D        D  +  ++     R  I       +G  +   +A 
Sbjct: 386 RLMEADADLEKVLVIDDRDTPLTLADKRIARAIRENNARLVIIDPVQAFLGADVDMNRAN 445

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
            +    R L      + C +V I  +    G          G  ++   ++VR  +  +G
Sbjct: 446 EVRPIFRSLGDIAQATGCAIVLIGHLNKAAGTQSTYR----GLGSIDITAAVRSLLF-IG 500

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
            +KD  +       +   K+ +A P + + F +   +G  + G       + 
Sbjct: 501 KLKDSPTT----RVLIHEKSSLAPPGQSLAFSLGDEKGFEWIGAYDITADEL 548


>gi|15605765|ref|NP_213142.1| hypothetical protein aq_204 [Aquifex aeolicus VF5]
 gi|2982935|gb|AAC06552.1| hypothetical protein aq_204 [Aquifex aeolicus VF5]
          Length = 293

 Score = 41.4 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 54/173 (31%), Gaps = 33/173 (19%)

Query: 40  SIFEGIEVVSSGSLGLDIA-------------LGIGGFPKGRIVEIYGPESSGKTTLALH 86
                +E V +G  GLD               + +GG P+  +  I G   +GK+ +   
Sbjct: 30  KKAPKLEGVPTGVEGLDELFFKSEIREGKVVKVPLGGIPRYSVTNITGVSDTGKSLMVEQ 89

Query: 87  TIAQSQKTGGTCAFVDAEHALD------SIYARKLGVDLKNLLISQP-----------DT 129
              +  + G   AF+  E             A  +GVD   +                + 
Sbjct: 90  YTVKQAERGEPVAFITVESPAPFVTMGLRERATAMGVDFDKIKDKIILIDAASHATLREN 149

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
               L     ++++  V   +IDSV  L    E    +  ++       M + 
Sbjct: 150 IPNLLATLAHVIKTYKVKHTIIDSVTGLYEAKE---MLARTIVRQLFNFMKKW 199


>gi|149919632|ref|ZP_01908111.1| hypothetical protein PPSIR1_07163 [Plesiocystis pacifica SIR-1]
 gi|149819575|gb|EDM79003.1| hypothetical protein PPSIR1_07163 [Plesiocystis pacifica SIR-1]
          Length = 369

 Score = 41.4 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 32  IMQLGSQGSIFEGIEVVSSG------SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
           I++  +   +    E +++G       L  D    +GG PKG  + + GP   GKT   L
Sbjct: 91  IIRPATFDDLIRKQEPLATGTVLDYLCLSEDSKTSLGGLPKGCTMALVGPPGKGKTRTTL 150

Query: 86  HTIAQSQKTGGTCAFVDAEHALD 108
            T+A+  +TG  CAFV AE    
Sbjct: 151 GTLARVAQTGIKCAFVVAEEGFH 173


>gi|317501420|ref|ZP_07959619.1| TnpY protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316897164|gb|EFV19236.1| TnpY protein [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 623

 Score = 41.4 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 75/232 (32%), Gaps = 15/232 (6%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKLGVDLKN 121
            P G++  I G    GKT  A+   A              E    +       LG  +K 
Sbjct: 326 IPFGKLTIIQGNPGEGKTYFAMRLAAACTNRKPLPGMETLEPFNIIYQTAEDGLGDTVKP 385

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD----MGESLPGMQAR 177
            L+      E+ L I D        D  +  ++     R  I       +G  +   +A 
Sbjct: 386 RLMEAEADLERVLVIDDRDTPLTLADERIARAIRENNARLVIIDPVQAFLGADVDMNRAN 445

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
            +    R L      + C +V I  +    G          G  ++   ++VR  +  +G
Sbjct: 446 EVRPIFRSLGDIAQATGCAIVLIGHLNKAAGTQSTYR----GLGSIDITAAVRSLLF-IG 500

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
            +KD  +       +   K+ +A P + + F +   +G  + G       + 
Sbjct: 501 KLKDSPTT----RVLIHEKSSLAPPGQSLAFSLGDEKGFEWIGAYDITADEL 548


>gi|295115236|emb|CBL36083.1| DNA primase (bacterial type) [butyrate-producing bacterium SM4/1]
          Length = 596

 Score = 41.4 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 75/232 (32%), Gaps = 15/232 (6%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKLGVDLKN 121
            P G++  I G    GKT  A+   A              E    +       LG  +K 
Sbjct: 326 IPFGKLTIIQGNPGEGKTYFAMRLAAACTNRKPLPGMETLEPFNIIYQTAEDGLGDTVKP 385

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD----MGESLPGMQAR 177
            L+      E+ L I D        D  +  ++     R  I       +G  +   +A 
Sbjct: 386 RLMEAEADLERVLVIDDRDTPLTLADERIARAIRENNARLVIIDPVQAFLGADVDMNRAN 445

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
            +    R L      + C +V I  +    G          G  ++   ++VR  +  +G
Sbjct: 446 EVRPIFRSLGDIAQATGCAIVLIGHLNKAAGTQSTYR----GLGSIDITAAVRSLLF-IG 500

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
            +KD  +       +   K+ +A P + + F +   +G  + G       + 
Sbjct: 501 KLKDSPTT----RVLIHEKSSLAPPGQSLAFSLGDEKGFEWIGAYDITADEL 548


>gi|294494701|ref|YP_003541194.1| RecA-superfamily ATPase implicated in signal transduction
          [Methanohalophilus mahii DSM 5219]
 gi|292665700|gb|ADE35549.1| RecA-superfamily ATPase implicated in signal transduction
          [Methanohalophilus mahii DSM 5219]
          Length = 245

 Score = 41.4 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
          +G  GLD  +G GG P+GR+  + G   SGKTT  +  +      G
Sbjct: 5  TGIEGLDELIG-GGLPQGRVYLLNGSPGSGKTTFGMQYLIHGVSFG 49


>gi|11141581|gb|AAG32010.1|AF277253_1 disrupted meiotic cDNA 1 protein [Australopyrum velutinum]
          Length = 138

 Score = 41.4 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 18/150 (12%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N++ ++  T E    +       +      ++++DSV AL          G      + 
Sbjct: 1   DNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAERQ 56

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR 234
           + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +R
Sbjct: 57  QKLAQMLSRLTXXXXXXNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           +           G Q   K+         +
Sbjct: 117 KGK---------GEQRVCKIFDAPNLPEGE 137


>gi|303244170|ref|ZP_07330508.1| putative circadian clock protein, KaiC [Methanothermococcus
           okinawensis IH1]
 gi|302485555|gb|EFL48481.1| putative circadian clock protein, KaiC [Methanothermococcus
           okinawensis IH1]
          Length = 242

 Score = 41.4 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 87/257 (33%), Gaps = 62/257 (24%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGGTCAFV 101
           ++ V++G  G+D  L  GG P+  +V + G   +GK+      + +        G    +
Sbjct: 1   MKRVNTGIPGMDEVL-HGGIPERNVVLLSGGPGTGKSIFCQQFLYKGVVDYNEPGILVAL 59

Query: 102 DAEHALDSIYARKLGVDL-------------------------KNLLISQPDTGEQALEI 136
           +          ++ G D+                         +  +++ P+   + ++I
Sbjct: 60  EEHPVQIRENMKQFGWDIKKFEDEGKFAIIDAFTYGIGSSAKKEKYVVNDPNDERELIDI 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
             + +       I +DSV  L     I   M          +  + +  L   I+   C 
Sbjct: 120 LKIAINDIGAKRIGLDSVTTLY----INKPM----------MARKTVFLLKRVIAGLGCT 165

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK-DKDSITG--NQTRVK 253
            +F +Q+ +         E   GG  ++            G IK D D I G  N++ + 
Sbjct: 166 AIFTSQISV--------GERGFGGPGVEHAVD--------GIIKLDLDEINGELNRSLIV 209

Query: 254 VVKNKMASPFKQVEFDI 270
                 +   K+  FDI
Sbjct: 210 WKMRGTSHSLKRHPFDI 226


>gi|253565780|ref|ZP_04843235.1| replicative DNA helicase [Bacteroides sp. 3_2_5]
 gi|251946059|gb|EES86466.1| replicative DNA helicase [Bacteroides sp. 3_2_5]
          Length = 454

 Score = 41.4 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 70/235 (29%), Gaps = 39/235 (16%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
           G      +G+  + +G   LD     GG+    ++ I    + GKT  ALH    +   G
Sbjct: 169 GRMRKNKDGVTGIPTGLTELDKM--TGGWQNNDLITIAARPAVGKTAFALHLAKVAAAAG 226

Query: 96  GTCAFVDAE---HALDSIYARKLGVDLKNLLISQPDTGEQAL-------EITDMLVRSGA 145
                   E     L   +    G    +L  S   + E  L       E+  + +    
Sbjct: 227 HHTVVYSLEMQGERLGDRWLLSAGEVDPHLWRSGKVSQETWLQARQTAGELARLPICVDD 286

Query: 146 VDIIVIDSVAALTPR--------------AEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
              + +D V +                   ++     E     + + ++QA RK      
Sbjct: 287 NPDMSMDRVRSSARLLQSKGKCDFIIIDYLQLCDMRTEQNNRNREQEVAQASRKAKLLAK 346

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
                ++ ++Q+               G     +      D+R  G+I+    + 
Sbjct: 347 ELHIPVILLSQLNR-------------GSENRAYGRLELADLRESGAIEQDSDLV 388


>gi|167771721|ref|ZP_02443774.1| hypothetical protein ANACOL_03093 [Anaerotruncus colihominis DSM
           17241]
 gi|167666361|gb|EDS10491.1| hypothetical protein ANACOL_03093 [Anaerotruncus colihominis DSM
           17241]
          Length = 623

 Score = 41.4 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 76/232 (32%), Gaps = 15/232 (6%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKLGVDLKN 121
            P G++  I G    GKT  A+   A              E    +       LG  +K 
Sbjct: 326 IPFGKLTIIQGNPGEGKTYFAMRLAAACTNRKPLPGMETLEPFNIIYQTAEDGLGDTVKP 385

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD----MGESLPGMQAR 177
            LI      E+ L I D  +     D  +  ++     +  I       +G  +   +A 
Sbjct: 386 RLIEADADLERVLVIDDRDIPLTLADERIARAIRENNAKLVIIDPVQAFLGADVDMNRAN 445

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
            +    R L      + C +V I  +    G          G  ++   ++VR  +  +G
Sbjct: 446 EVRPIFRSLGDIAQATGCAIVLIGHLNKAAGTQSTYR----GLGSIDITAAVRSLLF-IG 500

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
            +KD  +       +   K+ +A P + + F +   +G  + G       + 
Sbjct: 501 KLKDNPTT----RVLIHEKSSLAPPGQSLAFSLGDEKGFEWIGAYDITADEL 548


>gi|55379929|ref|YP_137779.1| circadian regulator [Haloarcula marismortui ATCC 43049]
 gi|55232654|gb|AAV48073.1| circadian regulator [Haloarcula marismortui ATCC 43049]
          Length = 389

 Score = 41.4 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           +      I  V  G  GLD  +  GG P+  ++   G   +GKTT  L  +    + G  
Sbjct: 153 EEEFESDIPRVDIGIEGLDQMI-QGGIPQRHLIVTIGSAGTGKTTFGLQFLHHGLRNGEN 211

Query: 98  CAFVDAEHA 106
             F+  E +
Sbjct: 212 AVFLTLEQS 220


>gi|37527344|ref|NP_930688.1| hypothetical protein plu3471 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36786778|emb|CAE15844.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 455

 Score = 41.4 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 76/264 (28%), Gaps = 40/264 (15%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           +   +G I  LG +    +   ++ +G    D     GGF    ++ I G    GKT LA
Sbjct: 152 KTLIEGYIDILGRRNLGEDSRGMIMTGIEPFDSL--TGGFNPTDLILIGGRPGMGKTELA 209

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARK-----------------LGVDLKNLLISQP 127
           L  I    + GG       E A   I  R                     D   +  +  
Sbjct: 210 LCMIEGMTRNGGAVLLFSMEMAAQQITERIVAGSAQLSVSKLRRGEFYDEDWARISNAIS 269

Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPR-----AEIEGDMGESLPGMQARLMSQA 182
           +  ++ + I D    S      + ++     P       +  G +           ++Q 
Sbjct: 270 ELIDRDIHILDASELSAEQICAISETHKRRYPNLKGIFVDYLGLIERPKAERNDLAIAQI 329

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
            R L     R    +  ++Q+   +                        D+R  GS++  
Sbjct: 330 SRALKGLAKRLHTPVTALSQLSRDVDKRPIHQRRPVAA-----------DLRDSGSLEQD 378

Query: 243 DSITGNQTRVKVVKNKMASPFKQV 266
                    +   ++ + +P    
Sbjct: 379 ADRI-----IFTYRDVVYNPLSPA 397


>gi|325109368|ref|YP_004270436.1| hypothetical protein Plabr_2815 [Planctomyces brasiliensis DSM
           5305]
 gi|324969636|gb|ADY60414.1| hypothetical protein Plabr_2815 [Planctomyces brasiliensis DSM
           5305]
          Length = 302

 Score = 41.4 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI-AQSQKTGGTCAFVD 102
               +S+G   LD  L  GG   GRI  + G    GK+ L +    A  ++ G    F D
Sbjct: 5   KSSRISTGIPDLDNMLA-GGLLGGRITVVLGATGIGKSQLGVQFADAGLKQEGERGFFFD 63

Query: 103 AEH 105
              
Sbjct: 64  MTS 66


>gi|224153905|ref|XP_002200052.1| PREDICTED: hypothetical protein, partial [Taeniopygia guttata]
          Length = 356

 Score = 41.4 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 7/66 (10%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101
           + +    LD  LG GG    +I EI G    GKT L +      Q         G   F+
Sbjct: 191 IITFCSALDNILG-GGVQLTKITEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFI 249

Query: 102 DAEHAL 107
           D E + 
Sbjct: 250 DTEGSF 255


>gi|239916720|ref|YP_002956278.1| DNA repair protein RadA [Micrococcus luteus NCTC 2665]
 gi|281414822|ref|ZP_06246564.1| DNA repair protein RadA [Micrococcus luteus NCTC 2665]
 gi|239837927|gb|ACS29724.1| DNA repair protein RadA [Micrococcus luteus NCTC 2665]
          Length = 478

 Score = 41.4 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 8/142 (5%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT-----CAFVDA 103
           S+G   LD  LG GG   G ++ + G    GK+TL L   AQ+ +  G        ++  
Sbjct: 74  STGVRELDRVLG-GGLVPGAVILLAGEPGIGKSTLLLDVAAQTARGAGGGGPRSVLYLTG 132

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E +   + +R     +  +  +   T E  L      +     +++++DSV  L      
Sbjct: 133 EESAAQVRSRA--DRIGAIADTLRLTAETDLGRALGQIERTDPELVIVDSVQTLQSTEVD 190

Query: 164 EGDMGESLPGMQARLMSQALRK 185
               G S     A  + +  ++
Sbjct: 191 GIAGGVSQVREVAASLIRTAKE 212


>gi|124028477|ref|YP_001013797.1| DNA repair and recombination protein radB [Hyperthermus butylicus
           DSM 5456]
 gi|123979171|gb|ABM81452.1| DNA repair and recombination protein radB [Hyperthermus butylicus
           DSM 5456]
          Length = 200

 Score = 41.4 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 73/193 (37%), Gaps = 21/193 (10%)

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           +YGP  SGKT LAL   A   ++G  C ++  E       A KL +    L++ Q     
Sbjct: 19  VYGPAGSGKTLLALELTAHQCRSGK-CLYITTEGVQFLERAAKLKLSADQLVVLQVFDYL 77

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
             L I ++  +    +I+V+DSV+++                   R +S     L     
Sbjct: 78  DLLHIVNL-RQLPLYNIVVLDSVSSIAREG----------SEEALRTLSLVSALLYRVYE 126

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS-----IKDKDSIT 246
                +++  Q+  K G      E  +G   L  +      + RVG      I++ +   
Sbjct: 127 EYMVPILYTAQLSWKPGE----GEKPSGIKPLSLWLRAIARLERVGQRYRLIIEEPEHNR 182

Query: 247 GNQTRVKVVKNKM 259
           G +   ++ +  +
Sbjct: 183 GWEFSYRITERGL 195


>gi|123966736|ref|YP_001011817.1| circadian clock protein KaiC [Prochlorococcus marinus str. MIT
           9515]
 gi|123201102|gb|ABM72710.1| possible circadian clock protein KaiC [Prochlorococcus marinus str.
           MIT 9515]
          Length = 509

 Score = 41.4 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 75/236 (31%), Gaps = 31/236 (13%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       +SSG   LD   G GG+ +  I+   G   +GKT L    I  + 
Sbjct: 248 MRLTQRSSNI----RISSGVKDLDEMCG-GGYFQDSIILATGATGTGKTMLVSKFIEDAY 302

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
                      E +   +        +            ++ + P++   E  L+I    
Sbjct: 303 NNNERAILFAYEESRAQLNRNATSWGIDFEKMESDGLLKIICAYPESTGLEDHLQIIKTQ 362

Query: 141 VRSGAVDIIVIDSVAAL-------TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
           +       + IDS++AL         R  + G  G S     A   +    +   S S +
Sbjct: 363 INQFKPKRLAIDSLSALARGVSLNAFRQFVIGVTGYSKQEEIAGFFTNTAEEFMGSHSIT 422

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKF---YSSVRLD----IRRVGSIKDK 242
              +  I    + +  +    E     N  K    +   R+       R   IKD 
Sbjct: 423 DSHISTITDTILLLQYVEIKGEMARAINVFKMRGSWHDKRIREYIITSRGPEIKDS 478



 Score = 40.2 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 35/106 (33%), Gaps = 14/106 (13%)

Query: 24  QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
           ++   K   MQ          ++ + +G  G D     GG P  R   + G   +GKT  
Sbjct: 3   EKKINKSNKMQ----------VQKLPTGIDGFDDVC-RGGLPASRSTLVSGTSGTGKTVF 51

Query: 84  A---LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126
           +   LH    +    G     +         A   G DL+ L+   
Sbjct: 52  SLQYLHHGICNFDEPGIFITFEESPLDIIRNAASFGWDLQKLIDQN 97


>gi|18873781|gb|AAL16367.1| KaiC [Nostoc linckia]
          Length = 209

 Score = 41.4 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 52/150 (34%), Gaps = 24/150 (16%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ----SQK 93
           +  +  G+E + +   G D  +  GG P GR   I G   +GKT L+L  +        +
Sbjct: 11  KAPLIVGVEKIRTMIEGFDD-ISHGGLPVGRTTLISGTSGTGKTLLSLQFLYNGITYFDE 69

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLIS------QPDTGEQALEI----------- 136
            G    F ++   +    A   G +L  L+              +  +I           
Sbjct: 70  PGVFVTFEESPSDIIKN-AHVFGWNLPRLIEEGKLFILDASPDPEGQDIVGNFDLSALIE 128

Query: 137 -TDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
                +R      + IDS+ A+  + E  G
Sbjct: 129 RLQYAIRKYKAKRVSIDSITAVFQQYEAMG 158


>gi|289705697|ref|ZP_06502081.1| DNA repair protein RadA [Micrococcus luteus SK58]
 gi|289557537|gb|EFD50844.1| DNA repair protein RadA [Micrococcus luteus SK58]
          Length = 478

 Score = 41.4 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 8/142 (5%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT-----CAFVDA 103
           S+G   LD  LG GG   G ++ + G    GK+TL L   AQ+ +  G        ++  
Sbjct: 74  STGVRELDRVLG-GGLVPGAVILLAGEPGIGKSTLLLDVAAQTARGAGGGGPRSVLYLTG 132

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E +   + +R     +  +  +   T E  L      +     +++++DSV  L      
Sbjct: 133 EESAAQVRSRA--DRIGAIADTLRLTAETDLGRALGQIERTDPELVIVDSVQTLQSTEVD 190

Query: 164 EGDMGESLPGMQARLMSQALRK 185
               G S     A  + +  ++
Sbjct: 191 GIAGGVSQVREVAASLIRTAKE 212


>gi|31087829|gb|AAN27949.1| disrupted meiotic cDNA 1 [Hordeum roshevitzii]
          Length = 138

 Score = 41.4 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 51/150 (34%), Gaps = 18/150 (12%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N++ ++  T E    +       +      ++++DSV AL          G      + 
Sbjct: 1   DNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAERQ 56

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR 234
           + ++Q   +LT         +   NQ+    G       P+   GG+ L   +++RL +R
Sbjct: 57  QKLAQMXSRLTXXXXEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           +           G Q   K+         +
Sbjct: 117 KGK---------GEQRVCKIFDAPNLPEGE 137


>gi|57504956|ref|ZP_00370909.1| TnpY [Campylobacter coli RM2228]
 gi|57019292|gb|EAL55995.1| TnpY [Campylobacter coli RM2228]
          Length = 623

 Score = 41.4 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 75/232 (32%), Gaps = 15/232 (6%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKLGVDLKN 121
            P G++  I G    GKT  A+   A              E    +       LG  +K 
Sbjct: 326 IPFGKLTIIQGNPGEGKTYFAMRLAAACTNRKPLPGMETLEPFNIIYQTAEDGLGDTVKP 385

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD----MGESLPGMQAR 177
            L+      E+ L I D        D  +  ++     R  I       +G  +   +A 
Sbjct: 386 RLMEADADLEKVLVIDDRDTPLTLADERIARAIRENNARLVIIDPVQAFLGADVDMNRAN 445

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
            +    R L      + C +V I  +    G          G  ++   ++VR  +  +G
Sbjct: 446 EVRPIFRSLGDIAQATGCAIVLIGHLNKAAGTQSTYR----GLGSIDITAAVRSLLF-IG 500

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
            +KD  +       +   K+ +A P + + F +   +G  + G       + 
Sbjct: 501 KLKDSPTT----RVLIHEKSSLAPPGQSLAFSLGDEKGFEWIGAYDITADEL 548


>gi|194445290|ref|YP_002040300.1| replicative DNA helicase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194403953|gb|ACF64175.1| replicative DNA helicase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 462

 Score = 41.4 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 46/141 (32%), Gaps = 9/141 (6%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G + LD A   GG     ++ + G    GKT  AL  +      GG       E A   
Sbjct: 175 TGIVDLDNA--TGGINPQDLIVVAGRPGMGKTEFALTVVEGVTSKGGGALIFSMEMAAAQ 232

Query: 110 IYARKL----GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           I  R L     + +  L   Q    E    +T  +      DI ++D+        E   
Sbjct: 233 IVERSLAGAGNLSVSRLRNPQDMYDEDWARLTAAIGELTDRDIWIVDATDLTV---EQIR 289

Query: 166 DMGESLPGMQARLMSQALRKL 186
            + E+       L    +  L
Sbjct: 290 AIAETHKRRHPHLAMIMVDYL 310


>gi|294813203|ref|ZP_06771846.1| DNA repair protein radA [Streptomyces clavuligerus ATCC 27064]
 gi|326441685|ref|ZP_08216419.1| DNA repair protein RadA [Streptomyces clavuligerus ATCC 27064]
 gi|294325802|gb|EFG07445.1| DNA repair protein radA [Streptomyces clavuligerus ATCC 27064]
          Length = 484

 Score = 41.4 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 50/130 (38%), Gaps = 7/130 (5%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G   LD  LG GG   G +V + G    GK+TL L   A++        +V  E +  
Sbjct: 74  STGVDELDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASPEHRTLYVTGEESAS 132

Query: 109 SIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
            +  R  ++     +L ++        L   D +  S    ++++DSV  +         
Sbjct: 133 QVRLRADRINALDDDLYLAAETDLSAVLGHLDAVRPS----LLIMDSVQTVASPEIDGAP 188

Query: 167 MGESLPGMQA 176
            G +     A
Sbjct: 189 GGMAQVREVA 198


>gi|72163110|ref|YP_290767.1| DNA repair protein RadA [Thermobifida fusca YX]
 gi|71916842|gb|AAZ56744.1| DNA repair protein RadA [Thermobifida fusca YX]
          Length = 454

 Score = 41.4 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 46/134 (34%), Gaps = 5/134 (3%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E  +   +G   LD  LG GG   G ++ + G    GK+TL L   A+    G      
Sbjct: 62  VEAAQATPTGLAELDRVLG-GGMVPGGVLLLAGEPGVGKSTLLLEVAARYAALGPVLYVT 120

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
             E A       +    L   L    +T   A+      V      ++++DSV  +    
Sbjct: 121 GEESAGQVRLRAERVGALAPKLYLAAETELPAVA---GHVDEVMPRLLIVDSVQTM-SVP 176

Query: 162 EIEGDMGESLPGMQ 175
           E  G  G      +
Sbjct: 177 EAPGTPGGVTQVRE 190


>gi|14590122|ref|NP_142186.1| hypothetical protein PH0187 [Pyrococcus horikoshii OT3]
 gi|3256573|dbj|BAA29256.1| 251aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 251

 Score = 41.4 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 55/164 (33%), Gaps = 5/164 (3%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-- 95
           +  I   +E V +G +     L  GG P+G +V + G   +GK+T     +    K G  
Sbjct: 6   EEKIERTVERVPTGII---DELINGGIPRGSVVLVIGDPKAGKSTFLTQFVYNQIKLGVP 62

Query: 96  GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
                VD         A + G +    L  +    +   +      +    + IV D   
Sbjct: 63  VIGVLVDISKYEFISNALEFGWEFTPYLDDKIILLDAYTQRLRKAPKFSFEETIVGDLSN 122

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
            +     I+    + L  ++   +   +  +T     +    ++
Sbjct: 123 TVNLLDAIKDTTLKILSSVKTDGVVGFISSMTPIFFETSKKEIY 166


>gi|315187587|gb|EFU21343.1| Non-specific serine/threonine protein kinase [Spirochaeta
           thermophila DSM 6578]
          Length = 482

 Score = 41.4 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 65/186 (34%), Gaps = 13/186 (6%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH--ALDSIYARKLGVDLKNL 122
             G I  I GP   GKTTLAL T     + G    +   E   A+    AR +G+ ++ L
Sbjct: 261 ETGTITLISGPSGVGKTTLALQTARSWAQAGMRALYYTFEEETAMILHRARSVGIPMEGL 320

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
             S      + L  +   + +      ++D +        +   +      +    +  +
Sbjct: 321 NTSFYLEKIEPLAHSAEALVNK-----ILDDLKERNTDLVVIDSIRGYSLAVGEGPLLPS 375

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242
           L  L   + R    ++ +++    +G    S E T+      + +   + ++ +      
Sbjct: 376 LHSLAKHLQRHGHSVILVDETSQVMGEFAISSEHTS------YLADTIIFLKYLERKSTI 429

Query: 243 DSITGN 248
             + G 
Sbjct: 430 RKVIGI 435



 Score = 41.0 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +SSG  GLD  L  GG+P+ +   + G    GKTTL +H +A+  K G    F+  E  
Sbjct: 5   RLSSGISGLDHIL-EGGYPERKAYLVRGGPGVGKTTLGMHFLAEGVKQGQPVLFISMEEP 63

Query: 107 LDSIYAR--KLGVDLKNLLISQPDTGEQ 132
              + +    LG+ +  + I      ++
Sbjct: 64  EAQLRSHYSALGLPIDGIPILDISPTQE 91


>gi|302187802|ref|ZP_07264475.1| hypothetical protein Psyrps6_15713 [Pseudomonas syringae pv.
           syringae 642]
          Length = 207

 Score = 41.4 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 56/137 (40%), Gaps = 11/137 (8%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI-Y 73
           +L+A L   +R   KG       +      I    SG   LD AL  GG+P   + EI  
Sbjct: 7   SLDALLD--ERRVWKG-------RQQSAPQISQQPSGHALLDAALPSGGWPAAALTEILI 57

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
               SG+  L   ++A+    G     V   +          GVDL+ L++ +  T + A
Sbjct: 58  AANGSGELRLLWPSLARLSALGERIVLVAPPYIPYPQAWLAAGVDLRQLVVIEATTRD-A 116

Query: 134 LEITDMLVRSGAVDIIV 150
           L   +  +RSG+   +V
Sbjct: 117 LWAAEQCLRSGSCGAVV 133


>gi|193212788|ref|YP_001998741.1| DNA repair protein RadA [Chlorobaculum parvum NCIB 8327]
 gi|193086265|gb|ACF11541.1| DNA repair protein RadA [Chlorobaculum parvum NCIB 8327]
          Length = 456

 Score = 41.4 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 88/263 (33%), Gaps = 18/263 (6%)

Query: 30  GAIMQLGS-QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           G+I ++ +   +  EG   + +G   LD  LG GG  +   + + G    GK+TL +  +
Sbjct: 52  GSIPEVQNLDDTPPEGFHRLMTGIGELDRVLG-GGLMEASAILVGGEPGIGKSTLMIQLV 110

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
              +  G    +V  E + + I  R   + +K   +         LE     + +   ++
Sbjct: 111 --PRLAGKKVLYVAGEESPNQIRERARRLSIKAPNLRLVSEVA--LERILDAIANEQPEM 166

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208
           +++DS+  +            +     A  + +A ++    +     I    +    K  
Sbjct: 167 VIVDSIQTVYSSDYQSSAGTITQIRECAASLIRAAKEQNFILLIIGHITKEGSLAGPKAL 226

Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
                      G   + Y  VR    R G   +     G     K+ ++ +       EF
Sbjct: 227 EHMVDTVIQFEGENYQRYRIVRSVKNRFGPTNE----IG---VFKMEEDGLTEVSNPSEF 279

Query: 269 DIMYGEGISFFGELIDLGVKASI 291
            I          ++    V A I
Sbjct: 280 FI-----SDRRTDVPGTAVLAGI 297


>gi|206900568|ref|YP_002250422.1| RecA-superfamily ATPases implicated in signal transduction
           [Dictyoglomus thermophilum H-6-12]
 gi|206739671|gb|ACI18729.1| RecA-superfamily ATPases implicated in signal transduction
           [Dictyoglomus thermophilum H-6-12]
          Length = 304

 Score = 41.4 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 67/240 (27%), Gaps = 34/240 (14%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIA-------------LGIGGFPKGRIVEIYGPES 77
           AI+ L   G     I  V +G  GLD               + +GG P+  +  + G   
Sbjct: 20  AILSLKDIGDRAVEIRGVPTGIEGLDNLFFTTKIEKGKTKVVPLGGIPQYSVFNLTGISD 79

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALD----------SIYARKLGVDLKNLLISQP 127
           +GK+ +      +    G   AF+  E              +    +  V  +N++    
Sbjct: 80  TGKSLMGEQFAIKQASLGNAVAFITVESPAHFVATSMKSRAAAMGVEENVIDENIVFIDA 139

Query: 128 DTG-------EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            +           L      ++   +   VIDS+  L    E    M   +       M 
Sbjct: 140 ASYSKLREDVPTLLATLAHAIKKYKIKYTVIDSITGLYEAKE---MMARVIVRQLFNFMK 196

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFG-SPETTTGGNALKFYSSVRLDIRRVGSI 239
           +  +       +      F  +      +              +      R+  R +G +
Sbjct: 197 KWYQTAIFISQKRSSQEEFSAEAAGGFAISHIVDGTMVLSKVLISSQYMERMYKRPMGEL 256


>gi|168985296|emb|CAQ09798.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
           recombination (yeast) [Homo sapiens]
          Length = 203

 Score = 41.4 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           +++GS   D  LG GG     I E +G   +GKT L+     + Q  
Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCGEHQME 146


>gi|312621869|ref|YP_004023482.1| DnaB domain-containing protein helicase domain-containing protein
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202336|gb|ADQ45663.1| DnaB domain protein helicase domain protein [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 605

 Score = 41.4 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           +  + +S+G   LD  L  GGF  G +       S GKTT  L  I    + G  C F+ 
Sbjct: 331 DKFKAISTGFKQLDDVLN-GGFVAGNLYVFGAKPSVGKTTFLLQLIDNFLQQGYECVFLS 389

Query: 103 A----EHALDSIYARKLG 116
           A    E  L  I+ R+ G
Sbjct: 390 AEMPKEEILTRIFCREYG 407


>gi|313115259|ref|ZP_07800738.1| conserved domain protein [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622428|gb|EFQ05904.1| conserved domain protein [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 623

 Score = 41.4 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 77/232 (33%), Gaps = 15/232 (6%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKLGVDLKN 121
            P G++  I G    GKT  A+   A              E    +       LG  +K 
Sbjct: 326 IPFGKLTIIQGNPGEGKTYFAMRLAAACTNRKPLPGMETLEPFNIIYQTAEDGLGDTVKP 385

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD----MGESLPGMQAR 177
            LI      E+ L I D        D  +  ++   + R  I       +G  +   +A 
Sbjct: 386 RLIEADADLERVLVIDDRDTPLTLADERIARAIRENSARLVIIDPVQAFLGADVDMNRAN 445

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
            +    R L      + C +V I  +    G          G  ++   ++VR  +  +G
Sbjct: 446 EVRPIFRSLGDIAQATGCAIVLIGHLNKAAGTQSTYR----GLGSIDITAAVRSLLF-IG 500

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
            +KD  ++      +   K+ +A P + + F +   +G  + G       + 
Sbjct: 501 KLKDSPTM----RVLIHEKSSLAPPGQSLAFSLGDEKGFEWIGAYDITADEL 548


>gi|221067967|ref|ZP_03544072.1| DnaB domain protein helicase domain protein [Comamonas testosteroni
           KF-1]
 gi|221068030|ref|ZP_03544135.1| DnaB domain protein helicase domain protein [Comamonas testosteroni
           KF-1]
 gi|220712990|gb|EED68358.1| DnaB domain protein helicase domain protein [Comamonas testosteroni
           KF-1]
 gi|220713053|gb|EED68421.1| DnaB domain protein helicase domain protein [Comamonas testosteroni
           KF-1]
          Length = 466

 Score = 41.4 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 1/112 (0%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
            +    +G   + +G   LD+ L  GGF  G +V I    S GKT LA+     + K   
Sbjct: 180 DERCSGKGDPFLPTGLHALDLQL-DGGFRAGELVIIGARPSMGKTALAMTIGMHAAKLRQ 238

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           T A    E     ++ R++ ++    L       ++   +    V   ++ I
Sbjct: 239 TVAMFSLEMQRGDLWQRQVAMESDVSLSKIRQPHKRMSHVDHDAVCEASMRI 290


>gi|195391578|ref|XP_002054437.1| GJ22809 [Drosophila virilis]
 gi|194152523|gb|EDW67957.1| GJ22809 [Drosophila virilis]
          Length = 349

 Score = 41.4 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 66/217 (30%), Gaps = 19/217 (8%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS------QKTGGTCA 99
             V+ G   LD   G GG     I EI G    GK+ + L               G   A
Sbjct: 86  SRVTFGCAALDQCTG-GGVSIRGITEICGASGVGKSQVLLQLSLSVQLPPRLGGLGKGVA 144

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           F+  E A  S    ++    +     +       + I         ++  + + +  L  
Sbjct: 145 FICTEDAFPSRRLLQISKAFEARYPEEQLNFLGNIFIEHQYESQPLLE-CISNRLPQLLQ 203

Query: 160 RAEIEGDMGESLP---------GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
              I   + +S+            +AR M + +  L S   +  C +V  NQM       
Sbjct: 204 AHSIGLIIIDSVAAIFRLYTDFEERARDMRRMVHALLSYADKYDCAVVCSNQMTATEKAD 263

Query: 211 FGSPETTTGGNA-LKFYSSVRLDIRRV-GSIKDKDSI 245
             + E               R+ I +V    K  D +
Sbjct: 264 QKTLEDVPCLGLQWANLGRTRMRISKVPKQFKQGDQL 300


>gi|88602459|ref|YP_502637.1| putative circadian clock protein, KaiC [Methanospirillum hungatei
           JF-1]
 gi|88187921|gb|ABD40918.1| putative circadian clock protein, KaiC [Methanospirillum hungatei
           JF-1]
          Length = 237

 Score = 41.4 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 3/85 (3%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I     G  GLD  L  GG  +G +  I G   +GKT  A + I Q    G +  ++  
Sbjct: 7   SIPRFGFGIKGLDEMLS-GGLIEGTVSSIIGAYGTGKTNFAQYYIWQGLIQGQSALYITL 65

Query: 104 EHALDSI--YARKLGVDLKNLLISQ 126
           E     I  Y    G D+   L S 
Sbjct: 66  EERTSRILGYMENKGWDVSQYLDST 90


>gi|37521975|ref|NP_925352.1| DNA repair protein RadA [Gloeobacter violaceus PCC 7421]
 gi|35212974|dbj|BAC90347.1| radA [Gloeobacter violaceus PCC 7421]
          Length = 480

 Score = 41.4 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 55/142 (38%), Gaps = 8/142 (5%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
             V SG   LD  LG GG   G +V I G    GK+TL L T  +      T  +V AE 
Sbjct: 70  SRVPSGFGELDRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQTACRL-SQAQTVLYVAAEE 127

Query: 106 ALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           +   +   A +LGV    L +      E  LE     + S    I V+DS+ A+   A  
Sbjct: 128 SAQQVKLRAERLGVAAPGLFLLA----ETELEAVLSELESLKPGIAVVDSIQAVYLGALT 183

Query: 164 EGDMGESLPGMQARLMSQALRK 185
                 S        + +  ++
Sbjct: 184 AAAGSVSQVRECTASLMRLAKR 205


>gi|330875012|gb|EGH09161.1| hypothetical protein PSYMP_08830 [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 206

 Score = 41.0 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 2/114 (1%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI-YGPESSGKTTLALHTIAQSQKTGG 96
           +      +    SG   LD AL  GG+P   + EI      SG+  L   ++A+    G 
Sbjct: 20  RQQSTPQVSPHPSGHAALDSALPTGGWPASALTEILIPANGSGELRLLWPSLARLSGIGE 79

Query: 97  TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
               V   +          GVDL+ L++ +  T + AL   +  +RSG+   +V
Sbjct: 80  RIVLVAPPYIPYPQAWLAAGVDLRQLVVIEASTRD-ALWAAEQCLRSGSCGAVV 132


>gi|329961665|ref|ZP_08299724.1| replicative DNA helicase [Bacteroides fluxus YIT 12057]
 gi|328531657|gb|EGF58491.1| replicative DNA helicase [Bacteroides fluxus YIT 12057]
          Length = 461

 Score = 41.0 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 5/100 (5%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           EG+  + +G   LD      G+ +G +  +    S GKT  ALH    +   G       
Sbjct: 182 EGVTGIPTGFADLDAL--TAGWQRGDLNILAARPSVGKTAFALHLAQAAAMAGRHVVVYS 239

Query: 103 AE---HALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
            E     L   +      D+    +         L+    
Sbjct: 240 LEMQGERLGDRWLLASTPDVDARHLRNGQLTPGELQQVHE 279


>gi|320156770|ref|YP_004189149.1| recA/RadA recombinase [Vibrio vulnificus MO6-24/O]
 gi|319932082|gb|ADV86946.1| recA/RadA recombinase [Vibrio vulnificus MO6-24/O]
          Length = 227

 Score = 41.0 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 4/103 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           +SG   LD  LG GGFP+  +VE+      G+  L  + + Q Q        +     L+
Sbjct: 30  TSGIDELDKLLG-GGFPQHGVVEMESALGIGELRLLANYLKQQQD---LIVLIHPPAVLN 85

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           + + R +   L N L+    + ++AL   +  ++SG    +++
Sbjct: 86  AAFWRNMDFPLANCLVIHSVSTKEALWAAEQCLKSGVCRTVIL 128


>gi|11141573|gb|AAG32006.1|AF277249_1 disrupted meiotic cDNA 1 protein [Taeniatherum caput-medusae]
          Length = 138

 Score = 41.0 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 18/150 (12%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N++ ++  T E    +       +      ++++DSV AL          G      + 
Sbjct: 1   DNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAERQ 56

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR 234
           + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +R
Sbjct: 57  QKLAQMLSRLTXXXXXXXVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           +           G Q   K+         +
Sbjct: 117 KGK---------GEQRVCKIFDAPNLPEGE 137


>gi|284155180|gb|ADB78691.1| disrupted meiotic cDNA 1 protein [Elymus sibiricus]
          Length = 137

 Score = 41.0 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 50/147 (34%), Gaps = 18/147 (12%)

Query: 123 LISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179
           + ++  T E    +       +      ++++DSV AL          G      + + +
Sbjct: 3   IYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAERQQKL 58

Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVG 237
           +Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +R+  
Sbjct: 59  AQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLRKGK 118

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFK 264
                    G Q   K+         +
Sbjct: 119 ---------GEQRVCKIFDAPNLPEGE 136


>gi|256810108|ref|YP_003127477.1| putative circadian clock protein, KaiC [Methanocaldococcus fervens
           AG86]
 gi|256793308|gb|ACV23977.1| putative circadian clock protein, KaiC [Methanocaldococcus fervens
           AG86]
          Length = 246

 Score = 41.0 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 91/266 (34%), Gaps = 61/266 (22%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ--SQKTGGTC 98
           + E +  V +G  G+D  L  GG P+  +V + G   +GK+      + +   +    + 
Sbjct: 1   MGENMRRVKTGIPGMDEIL-HGGIPERNVVLLSGGPGTGKSIFCQQFLYKGVVEYNEPSV 59

Query: 99  AFVDAEHALD-SIYARKLGVDL-------------------------KNLLISQPDTGEQ 132
                EH +      ++ G D+                         +  +++ P+   +
Sbjct: 60  LIALEEHPVQIRENMKQFGWDVRKLEEEGKFAIIDAFTYGIGSAAKREKYVVNDPNDERE 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
            +++    +       + IDSV  L     I   M          L  + +  L   IS 
Sbjct: 120 LIDVLKTAINDIGAKRVGIDSVTTLY----ITKPM----------LARRTVFLLKRVISG 165

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS--SVRLDIRRVGSIKDKDSITGNQT 250
             C  +F +Q+ +         E   GG  ++      +RLD+       D+ +    ++
Sbjct: 166 LGCTAIFTSQISV--------GERGFGGPGVEHAVDGIIRLDL-------DEVNGELKRS 210

Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGI 276
            +       +   K+  FDI   EGI
Sbjct: 211 LIVWKMRGTSHSLKRHPFDIT-DEGI 235


>gi|298674663|ref|YP_003726413.1| putative circadian clock protein KaiC [Methanohalobium evestigatum
           Z-7303]
 gi|298287651|gb|ADI73617.1| putative circadian clock protein, KaiC [Methanohalobium evestigatum
           Z-7303]
          Length = 358

 Score = 41.0 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 3/121 (2%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + + +G  GLD  +  GG      + + G   +GK+T A+  I    + G    +V  E 
Sbjct: 4   DRIPTGIAGLDRVI-EGGLRDNTTLLVVGSSGTGKSTFAMQYIMYGLENGENALYVSLEE 62

Query: 106 ALDSIYARK--LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
             + I      LG D+K     +        E    LV      ++  +   ++  R  I
Sbjct: 63  PPEQILEEAEKLGFDMKKYHERELFFFHTKGEDFKQLVEEQLPALVEANKDYSVRTRVVI 122

Query: 164 E 164
           +
Sbjct: 123 D 123


>gi|108761046|ref|YP_635262.1| hypothetical protein MXAN_7149 [Myxococcus xanthus DK 1622]
 gi|108464926|gb|ABF90111.1| conserved hypothetical protein [Myxococcus xanthus DK 1622]
          Length = 514

 Score = 41.0 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 1/69 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            V SG  GLD  L  GGF +G    I G   +GKT L       +   GG   ++     
Sbjct: 14  RVPSGVPGLDALL-RGGFLRGGTYIITGAPGTGKTILGNQFCFATVAQGGRAIYLTVLGE 72

Query: 107 LDSIYARKL 115
             +     L
Sbjct: 73  SHARMMLHL 81



 Score = 37.5 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           G   LD  L  GG  +     + GP   GKT L LH +A+  + 
Sbjct: 253 GIPALDEMLS-GGLVRDSSTLVAGPPGCGKTQLGLHFLAEGARR 295


>gi|56961904|ref|YP_173626.1| DNA repair protein RadA [Bacillus clausii KSM-K16]
 gi|56908138|dbj|BAD62665.1| DNA repair protein RadA [Bacillus clausii KSM-K16]
          Length = 482

 Score = 41.0 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 74/195 (37%), Gaps = 13/195 (6%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E    VS+    LD  LG GG   G +V + G    GK+TL L   A+         ++ 
Sbjct: 92  EKEPRVSTTMAELDRVLG-GGIVPGSLVLVGGDPGIGKSTLLLQLSAKLANVNERVLYIS 150

Query: 103 AEHALDSIYARKLGVDL-KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
            E ++     R   ++L  + L    +T    + + +  +      +++IDS+  +  + 
Sbjct: 151 GEESVKQTKLRADRLELASDQLYVLAETD---IALIEGAIDEVQPSLVIIDSIQTVY-QD 206

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221
           EI    G      +              ++++K + +FI     K G + G        +
Sbjct: 207 EITSAPGSVAQVRE-------CTAAFMRVAKTKGVAIFIVGHVTKQGSIAGPKLLEHMVD 259

Query: 222 ALKFYSSVRLDIRRV 236
           ++ ++   R    R+
Sbjct: 260 SVLYFEGERHHSYRI 274


>gi|260809490|ref|XP_002599538.1| hypothetical protein BRAFLDRAFT_161990 [Branchiostoma floridae]
 gi|229284818|gb|EEN55550.1| hypothetical protein BRAFLDRAFT_161990 [Branchiostoma floridae]
          Length = 103

 Score = 41.0 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 39 GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
            I     ++S+G+  LD  L  GG   G + E+ G   SGKT + +     
Sbjct: 47 EEILSTTAILSTGNSRLDDML-DGGIYTGALTEVIGASGSGKTQICMSVAVH 97


>gi|237723082|ref|ZP_04553563.1| replicative DNA helicase [Bacteroides sp. 2_2_4]
 gi|229447604|gb|EEO53395.1| replicative DNA helicase [Bacteroides sp. 2_2_4]
          Length = 459

 Score = 41.0 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 53/168 (31%), Gaps = 18/168 (10%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQ-------------GSIFEGIEVVSS 50
            + M+I D        L +++  +G    M+   +              +   G+  + +
Sbjct: 129 DETMDIDDSLVDAHNLLDRLEGEFGHNNHMRDMDELMTATMVEAEGRIANNKNGVTGLPT 188

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE---HAL 107
           G   LD      G  KG +V +      GKT  ALH    +   G   A    E     L
Sbjct: 189 GLADLDRM--TSGLQKGELVVVAARPGVGKTAFALHMARSAAMAGYAVAVYSLEMQGERL 246

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
              +   +         S   + ++ +E          + I V DS +
Sbjct: 247 ADRWLTAVSEISARHWRSGTVSQQELVEARTTAADLKRLPIHVDDSTS 294


>gi|11141557|gb|AAG31998.1|AF277241_1 disrupted meiotic cDNA 1 protein [Agropyron cristatum]
          Length = 138

 Score = 41.0 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 52/150 (34%), Gaps = 18/150 (12%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N++ ++  T E    +       +      ++++DSV AL          G      + 
Sbjct: 1   DNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAERQ 56

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR 234
           + ++Q L +LT         L   NQ+    G       P+   GG+ L   +++RL +R
Sbjct: 57  QKLAQMLSRLTXXXXXXNVALYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           +           G Q   K+         +
Sbjct: 117 KGK---------GEQRVCKIFDAPNLPEGE 137


>gi|225574757|ref|ZP_03783367.1| hypothetical protein RUMHYD_02834 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038028|gb|EEG48274.1| hypothetical protein RUMHYD_02834 [Blautia hydrogenotrophica DSM
           10507]
          Length = 606

 Score = 41.0 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 84/276 (30%), Gaps = 35/276 (12%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           +      +E + SG  GLD     GGF  G+++ + G    GK+TL      Q+   G  
Sbjct: 312 KRMDLNAMEKIRSGIYGLDKL--TGGFYFGQVILVTGERGFGKSTLVSQFGTQAIAAGYP 369

Query: 98  CAFVDAE-----HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS-GAVDIIVI 151
             F   E           Y      ++  L+                 + +  A    + 
Sbjct: 370 TFFYSGELMDWYFKAWIEYQIAGARNINALISDYGYKSYSIQADKLQQIENWYAGKAYIY 429

Query: 152 DSVAALTPRA-----------------------EIEGDMGESLPGMQARLMSQALRKLTS 188
           D+                                +   + + L     R+ ++ ++ LT 
Sbjct: 430 DNGIVTEDTEEETLLETLENAIKQYGCRVLVIDNLMTAISDDLSSDLYRMQTKFVKALTV 489

Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248
              R   ++  I   R   GV F + +   G + +     V +   R G  KD D     
Sbjct: 490 LAKRYDVLVFLIVHPRKSTGVAFDNDDV-AGSSNITNLVDVVI---RYGKPKDNDKKDST 545

Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284
           +  + V KN++     +    + + E      E  +
Sbjct: 546 ERILSVYKNRLNGRTNRDGIKLYFQESSKRISENPE 581


>gi|126466017|ref|YP_001041126.1| hypothetical protein Smar_1122 [Staphylothermus marinus F1]
 gi|126014840|gb|ABN70218.1| putative circadian clock protein, KaiC [Staphylothermus marinus F1]
          Length = 251

 Score = 41.0 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 3/82 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E V +G  G D  +  GG PK  +V + G   +GK+      +    + G    FV  E
Sbjct: 2   VERVKTGIPGFDEIVN-GGIPKRNVVLLSGGPGTGKSIFGTQYLWNGLQMGEPGVFVALE 60

Query: 105 --HALDSIYARKLGVDLKNLLI 124
                  I  R+ G D++    
Sbjct: 61  EHPVQVRINMRQFGWDVRPYEQ 82


>gi|220904700|ref|YP_002480012.1| DNA repair protein RadA [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868999|gb|ACL49334.1| DNA repair protein RadA [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 458

 Score = 41.0 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 53/143 (37%), Gaps = 11/143 (7%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH----TIAQSQKTGGTCAFVDAEH 105
           SG   LD  LG G  P G  + + G    GK+TL L       AQ    G    +   E 
Sbjct: 74  SGLQALDRVLGKGLVP-GAAILVGGEPGIGKSTLLLQVAGLVAAQMASAGRPVLYASGEE 132

Query: 106 ALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           +L  I   A +LG+   NLL          +E       +    ++V+DSV  LT     
Sbjct: 133 SLPQIKGRAERLGMLDPNLLALA----TSRVEDVVEAANAQNPALLVVDSVQTLTSLEAE 188

Query: 164 EGDMGESLPGMQARLMSQALRKL 186
                 S     A  + +  R+L
Sbjct: 189 GLPGNVSQVRAVATSLLELCRRL 211


>gi|307330426|ref|ZP_07609570.1| DNA repair protein RadA [Streptomyces violaceusniger Tu 4113]
 gi|306883943|gb|EFN14985.1| DNA repair protein RadA [Streptomyces violaceusniger Tu 4113]
          Length = 474

 Score = 41.0 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 45/127 (35%), Gaps = 3/127 (2%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   LD  LG GG   G +V + G    GK+TL L   A++        ++  E +   
Sbjct: 78  TGVDELDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASEEHRTLYITGEESASQ 136

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           +  R     +  L        E  L      + S    ++V+DSV  +          G 
Sbjct: 137 VRLRA--DRIGALSEHLYLAAETDLSAVLGHLDSVKPSLLVLDSVQTIASPEIDGAPGGM 194

Query: 170 SLPGMQA 176
           +     A
Sbjct: 195 AQVREVA 201


>gi|189195182|ref|XP_001933929.1| DNA repair protein rhp57 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187979808|gb|EDU46434.1| DNA repair protein rhp57 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 441

 Score = 41.0 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 41/114 (35%), Gaps = 9/114 (7%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK-----TTLALHTIA 89
           LG +   +     +S+    LD ALG GG P+G +VEI G   +GK     T L    +A
Sbjct: 82  LGEEKDTWT---CISTLDERLDAALG-GGIPRGYLVEITGESGAGKTQLLLTLLLSAQLA 137

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
                  +  ++  E  L +    +L      L    P        I  +    
Sbjct: 138 PPHGLSKSSVYISTEALLSTTRLSQLLSSHPALSTLPPSQKPSLSRILSIQTPD 191


>gi|57233577|ref|YP_180811.1| DNA repair protein RadA [Dehalococcoides ethenogenes 195]
 gi|57224025|gb|AAW39082.1| DNA repair protein RadA [Dehalococcoides ethenogenes 195]
          Length = 462

 Score = 41.0 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 68/192 (35%), Gaps = 7/192 (3%)

Query: 52  SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--HALDS 109
               +  LG GG   G ++ + G    GK+TL L   A   ++GG   +V  E   A   
Sbjct: 73  ISEFNRVLG-GGIVPGSLMLLGGEPGIGKSTLLLQVAASVAQSGGKVVYVSGEENPAQIK 131

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           + A++LG+  + L +         L    +L       ++VIDS+  +            
Sbjct: 132 MRAQRLGISGEGLFLMAETDLNAILAQLSVLCPL----LVVIDSIQTVFLPELEAAPGAI 187

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           +     A  + Q  +   +S+  +  +    N    +I            G +   Y  V
Sbjct: 188 NQVRESALRLMQWAKSSGASVFITAHVTKEGNIAGPRILEHIVDVVMYFEGESQSAYRLV 247

Query: 230 RLDIRRVGSIKD 241
           R    R GS  +
Sbjct: 248 RSVKNRFGSTNE 259


>gi|283852950|ref|ZP_06370209.1| DNA repair protein RadA [Desulfovibrio sp. FW1012B]
 gi|283571640|gb|EFC19641.1| DNA repair protein RadA [Desulfovibrio sp. FW1012B]
          Length = 447

 Score = 41.0 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 68/165 (41%), Gaps = 12/165 (7%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           LGS  +  E      +   GLD  LG GG   G  V + G    GK+TL L     +   
Sbjct: 58  LGSHPN--EDFRPFPTAFSGLDRVLG-GGLTPGGAVLLGGEPGIGKSTLLLQLAGLAAVA 114

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
           G    ++ AE +L  + AR   + + +  +    T +    +  +   + A D++++DSV
Sbjct: 115 GRRVVYLSAEESLPQLKARAERLGVLHEGLLAASTTDAGAAVDVLGA-TPAPDLVIVDSV 173

Query: 155 AALTPRAEIEGDMGE-------SLPGMQARLMSQALRKLTSSISR 192
             +   A IEG  G        +   ++A    QA   L   +++
Sbjct: 174 QTMH-MAGIEGAAGSVSQVRSVAAACVEAAKRGQACLVLVGHVTK 217


>gi|291333609|gb|ADD93301.1| KaiC domain protein [uncultured archaeon MedDCM-OCT-S09-C50]
          Length = 260

 Score = 41.0 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +G  GLD  L  GG P G  V   G   SGKTTL +  + +    G  CA   A    
Sbjct: 14  TGIHGLDEIL-RGGIPYGSTVLAAGTCGSGKTTLGMEFLVRGALAGEACAHFTATEPS 70


>gi|293372622|ref|ZP_06619004.1| replicative DNA helicase [Bacteroides ovatus SD CMC 3f]
 gi|292632431|gb|EFF51027.1| replicative DNA helicase [Bacteroides ovatus SD CMC 3f]
          Length = 459

 Score = 41.0 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 53/168 (31%), Gaps = 18/168 (10%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQ-------------GSIFEGIEVVSS 50
            + M+I D        L +++  +G    M+   +              +   G+  + +
Sbjct: 129 DETMDIDDSLVDAHNLLDRLEGEFGHNNHMRDMDELMTATMVEAEGRIANNKNGVTDLPT 188

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE---HAL 107
           G   LD      G  KG +V +      GKT  ALH    +   G   A    E     L
Sbjct: 189 GLADLDRM--TSGLQKGELVVVAARPGVGKTAFALHMARSAAMAGYAVAVYSLEMQGERL 246

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
              +   +         S   + ++ +E          + I V DS +
Sbjct: 247 ADRWLTAVSEISARHWRSGTVSQQELVEARTTAADLKRLPIHVDDSTS 294


>gi|297527312|ref|YP_003669336.1| putative circadian clock protein, KaiC [Staphylothermus hellenicus
           DSM 12710]
 gi|297256228|gb|ADI32437.1| putative circadian clock protein, KaiC [Staphylothermus hellenicus
           DSM 12710]
          Length = 249

 Score = 41.0 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 3/82 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E V +G  G D  +  GG PK  +V + G   +GK+      +    + G    FV  E
Sbjct: 2   VERVKTGIPGFDEIVN-GGIPKRNVVLLSGGPGTGKSIFGTQYLWNGLQMGEPGVFVALE 60

Query: 105 --HALDSIYARKLGVDLKNLLI 124
                  I  R+ G D++    
Sbjct: 61  EHPVQIRINMRQFGWDVRPYEQ 82


>gi|149369641|ref|ZP_01889493.1| DNA repair protein [unidentified eubacterium SCB49]
 gi|149357068|gb|EDM45623.1| DNA repair protein [unidentified eubacterium SCB49]
          Length = 458

 Score = 41.0 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 66/195 (33%), Gaps = 20/195 (10%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
            L+  LG GG   G +  + G    GK+TL L    Q         +V  E +   I  R
Sbjct: 84  ELNRVLG-GGLVPGSLTLLGGEPGIGKSTLMLQIALQLPYK---TLYVSGEESASQIKMR 139

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
              +  ++       T  +   I    +     DI+VIDS+  L        D  ES  G
Sbjct: 140 AERIHPES-ENCYILTETKTQNIFRN-IAEMEPDIVVIDSIQTLHT------DYIESSAG 191

Query: 174 MQARLMSQALRKLTSSISRSKCILVFI-------NQMRMKIGVMFGSPETTTGGNALKFY 226
             ++ + +   +L      +   ++ I       N    KI            G+    Y
Sbjct: 192 SISQ-IRETTTELIKFAKETATPVILIGHITKDGNIAGPKILEHMVDTVLQFEGDRNHIY 250

Query: 227 SSVRLDIRRVGSIKD 241
             +R +  R GS  +
Sbjct: 251 RILRANKNRFGSTNE 265


>gi|308809986|ref|XP_003082302.1| AtRAD51D (ISS) [Ostreococcus tauri]
 gi|116060770|emb|CAL57248.1| AtRAD51D (ISS) [Ostreococcus tauri]
          Length = 286

 Score = 41.0 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E++ +G   +D  LG G   +G ++EI GP +SGKT + L   A     G    +VD  
Sbjct: 36  LEILPTGCDAIDGLLGGG-LRQGEVIEIVGPSASGKTQVCLSAAASFAALGHRVVYVDTG 94

Query: 105 HALDSIYARKLGV 117
               +   ++   
Sbjct: 95  GGFSATRIKQFHR 107


>gi|27366261|ref|NP_761789.1| RecA/RadA recombinase [Vibrio vulnificus CMCP6]
 gi|27362462|gb|AAO11316.1| RecA/RadA recombinase [Vibrio vulnificus CMCP6]
          Length = 227

 Score = 41.0 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 4/103 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           +SG   LD  LG GGFP+  +VE+      G+  L  + + Q Q        +     L+
Sbjct: 30  TSGIDELDKLLG-GGFPQHGVVEMESALGIGELRLLANYLKQQQD---LIVLIHPPAVLN 85

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           + + R +   L N L+    + ++AL   +  ++SG    +++
Sbjct: 86  AAFWRNMDFPLANCLVIHSVSTKEALWAAEQCLKSGVCRTVLL 128


>gi|37679480|ref|NP_934089.1| hypothetical protein VV1296 [Vibrio vulnificus YJ016]
 gi|37198224|dbj|BAC94060.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
          Length = 227

 Score = 41.0 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 4/103 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           +SG   LD  LG GGFP+  +VE+      G+  L  + + Q Q        +     L+
Sbjct: 30  TSGIDELDKLLG-GGFPQHGVVEMESALGIGELRLLANYLKQQQD---LIVLIHPPAVLN 85

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           + + R +   L N L+    + ++AL   +  ++SG    +++
Sbjct: 86  AAFWRNMDFPLANCLVIHSVSTKEALWAAEQCLKSGVCRTVLL 128


>gi|255021589|ref|ZP_05293632.1| RecA/RadA recombinase [Acidithiobacillus caldus ATCC 51756]
 gi|254968977|gb|EET26496.1| RecA/RadA recombinase [Acidithiobacillus caldus ATCC 51756]
          Length = 221

 Score = 41.0 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 4/104 (3%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEI-YGPESSGKTTLAL-HTIAQSQKTGGTCAFVDAEHAL 107
           +G   LD  L  GG+P+G I EI       G+  L L    + SQ+      +V   +  
Sbjct: 39  TGQEELDRLL--GGWPRGGITEIHSSTPGIGELRLLLPVLASLSQQQKRWILWVTPPYLP 96

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
                   G+ L+ +L   P   +  L   +  +RSG    ++ 
Sbjct: 97  YPPALAAAGLRLERMLCLHPRQRQDRLWALESALRSGTCSAVLA 140


>gi|15806125|ref|NP_294829.1| DNA repair protein RadA [Deinococcus radiodurans R1]
 gi|6458839|gb|AAF10678.1|AE001960_6 DNA repair protein [Deinococcus radiodurans R1]
          Length = 503

 Score = 41.0 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 77/231 (33%), Gaps = 31/231 (13%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
               SG   LD  LG G    G +  I G    GK+TL L    +    GGT  +V  E 
Sbjct: 130 PRTPSGIPELDRVLGGG-LVAGGVTLIGGEPGIGKSTLLLQVADKVASRGGTVLYVAGEE 188

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +L+ I  R    D   +      T +   E    L+      + ++DS+  +T   E EG
Sbjct: 189 SLEQIRLRA---DRLGVAADLQMTRDTRAEHIAALLEEHKPALCIVDSIQTVT--VEGEG 243

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
             G          M      LT +   +    V +  +            T  G   ++ 
Sbjct: 244 APGGVAQVRDGTAM------LTRAAKETGTATVLVGHVTKDG--------TVAGPKVMEH 289

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276
                + +             G    ++ VKN+     +   F++  GEG+
Sbjct: 290 IVDTTVFL----------ETVGAFRLLRSVKNRFGQAGELGVFEMR-GEGL 329


>gi|310287985|ref|YP_003939244.1| DNA repair protein radA [Bifidobacterium bifidum S17]
 gi|309251922|gb|ADO53670.1| DNA repair protein radA [Bifidobacterium bifidum S17]
          Length = 466

 Score = 41.0 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 43/142 (30%), Gaps = 1/142 (0%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
             +S+G    D  LG G  P G +V I G    GK+TL L T           + +    
Sbjct: 79  SRLSTGFGEFDRVLGSGIVP-GSVVLIAGEPGIGKSTLLLETAGNIAAGQPNGSVLYVSG 137

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
                  R     +  +  +        L     L+      + ++DS   +  +     
Sbjct: 138 EESQAQVRLRASRVNAMEQNLLLASTTDLATVLGLIERTRPTLAIVDSAQTIVSQDVDGI 197

Query: 166 DMGESLPGMQARLMSQALRKLT 187
             G +     A  +    + L 
Sbjct: 198 SGGSTQVREVASALIDTAKTLN 219


>gi|257387123|ref|YP_003176896.1| KaiA binding [Halomicrobium mukohataei DSM 12286]
 gi|257169430|gb|ACV47189.1| KaiA binding [Halomicrobium mukohataei DSM 12286]
          Length = 228

 Score = 41.0 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 67/203 (33%), Gaps = 9/203 (4%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SG  G D  L  GG  + R+  I GP  SGKTT +   I Q  K G  C +V      + 
Sbjct: 5   SGVPGFDE-LVEGGLLENRLYVISGPPGSGKTTFSAQFITQGAKRGEDCLYVTMHETKEE 63

Query: 110 IYARKLGVDLK---NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           +     G D      +            E     +     +  +   + A   +  +E  
Sbjct: 64  LMQDMAGYDFGFDRAMQSDAIQFLNLVTESGKRTITQFGSEGGLTSRLVAFIEQNNVERV 123

Query: 167 MGESLPGMQARLMSQALRKLTS---SISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
           + +S   +    ++    ++T    ++ ++   ++ I++M               G    
Sbjct: 124 VVDSTM-LLQHFLTDVSEEITGFLSALKQTDATVLLISEMT-DPTSYSDEHYLAHGVVFF 181

Query: 224 KFYSSVRLDIRRVGSIKDKDSIT 246
             +       R +  IK + +  
Sbjct: 182 HNFLDSGSMTRGLQVIKMRGTAI 204


>gi|32477213|ref|NP_870207.1| hypothetical protein RB11894 [Rhodopirellula baltica SH 1]
 gi|32447764|emb|CAD77282.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
          Length = 461

 Score = 41.0 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE-IYGP 75
           EA L +++R     AI          +     S+GS  LD  L  GG  +G I E I   
Sbjct: 130 EALLQKLRRQ--TEAI---SDPLVATDSTPRFSTGSSALDSWLPGGGMRRGTISEWIAET 184

Query: 76  ESSGKTTLALHTIAQS------------QKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
           E  G  TL+L   AQ                 G    VD      +  A   G+  + ++
Sbjct: 185 EGGGAGTLSLLAAAQILGTANQPHPPAHAHHDGPVIVVDPGGHFYAPAAIACGIPAERIV 244

Query: 124 ISQPDTGEQALEITDM 139
             +      A+   D 
Sbjct: 245 WCRVTNRRDAVWTLDQ 260


>gi|148980527|ref|ZP_01816100.1| hypothetical protein VSWAT3_23279 [Vibrionales bacterium SWAT-3]
 gi|145961180|gb|EDK26495.1| hypothetical protein VSWAT3_23279 [Vibrionales bacterium SWAT-3]
          Length = 233

 Score = 41.0 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 2/94 (2%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
             LD  L  GGFP   ++E+   +  G+  L L      Q +     F++    + + + 
Sbjct: 32  PQLDKQL-DGGFPTHGVIEVESQQGIGELRL-LTPYLAQQNSQKLAIFINPPGKICAEFF 89

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
              GV+L N+L+ +P     AL   +  ++SGA 
Sbjct: 90  SSQGVELDNILVIEPQRDLDALWAAEQCLKSGAC 123


>gi|331092944|ref|ZP_08341449.1| hypothetical protein POR16_12381 [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331022478|gb|EGI02535.1| hypothetical protein POR16_12381 [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 207

 Score = 41.0 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 2/108 (1%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEI-YGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
            +    SG   LD AL  GG+P   + EI      SG+  L   ++A+   +G     V 
Sbjct: 27  QVSPHPSGHAALDSALPTGGWPASALTEILIASNGSGELRLLWPSLARLSGSGERIVLVA 86

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
             +          GVDL++L++ +  T + AL   +  +RSG+   ++
Sbjct: 87  PPYIPYPQAWLAAGVDLRHLVVIEAGTRD-ALWAAEQCLRSGSCGAVI 133


>gi|328766750|gb|EGF76803.1| hypothetical protein BATDEDRAFT_7636 [Batrachochytrium
          dendrobatidis JAM81]
          Length = 54

 Score = 41.0 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
          +S G   LD A G GG   G I E++GP S+GKT LAL    Q Q  
Sbjct: 1  LSFGDQILDSAFG-GGLLTGSINELFGPASAGKTQLALQLSLQVQMP 46


>gi|291562184|emb|CBL41000.1| RecA-family ATPase [butyrate-producing bacterium SS3/4]
          Length = 633

 Score = 41.0 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 85/269 (31%), Gaps = 20/269 (7%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKLGVDLKN 121
            P G++  + G    GKTT AL   A     G             +       LG  +K 
Sbjct: 329 IPFGKVTIVQGNPGEGKTTFALRLAAACTTGGTLPGMKPLPPFQVIYQTAEDGLGDTVKP 388

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD----MGESLPGMQAR 177
            L+      ++ L I +        D  +  ++     R  I       MGE     +A 
Sbjct: 389 RLMEAEADLDRVLVIDEAKQELSLSDERIERAIRQTGARLIILDPIQAYMGEKADMNRAN 448

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
            +    R+L     R+ C ++ I    +       S     G    +  +   L I R  
Sbjct: 449 EVRPIFRRLAEVAERTGCAVILI--GHLNKAAGGQSAYRGLGSIDFRAAARSVLLIGR-- 504

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
            +K + ++      V   K+ +A   K V F +    G  + GE      +      SGA
Sbjct: 505 -VKREPNV----RVVIHDKSSLAPEGKPVAFCLDPETGFEWIGEYDITADELL----SGA 555

Query: 298 WFSFKGQRLGQGRENSKIFLRENIEIAEN 326
             +    +  Q        L +  E+A  
Sbjct: 556 GGN-NATKTEQAERLILDLLADGKELASE 583


>gi|257052930|ref|YP_003130763.1| KaiA binding [Halorhabdus utahensis DSM 12940]
 gi|256691693|gb|ACV12030.1| KaiA binding [Halorhabdus utahensis DSM 12940]
          Length = 228

 Score = 41.0 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 69/202 (34%), Gaps = 7/202 (3%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           SG  G D  L  GG    R+  + GP  SGKTT +   I Q  K G TC +V        
Sbjct: 5   SGVPGFDE-LVEGGLLPNRLYVVSGPPGSGKTTFSSMFITQGAKEGDTCLYVTMHETKSE 63

Query: 110 IYARKLGVDLK---NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           +     G +      +  +         E     +     D  + + + A     +I+  
Sbjct: 64  LSKDMAGFEFGFDRAMQSNTVQFLNLVTESGKRTISQFGSDGGLTNRLVAYIEANDIDRA 123

Query: 167 MGESLPGMQ--ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           + +S   +Q     +S+ +    S++ ++   +V I++M               G     
Sbjct: 124 VIDSTMLLQHFFTDVSEEITGFLSALKQTDATIVLISEMT-DPSAYSDEHYLAHGVIFFH 182

Query: 225 FYSSVRLDIRRVGSIKDKDSIT 246
            +       R V  IK + +  
Sbjct: 183 NFLDSGSMTRGVQVIKMRGTAI 204


>gi|260428123|ref|ZP_05782102.1| DNA repair protein RadA [Citreicella sp. SE45]
 gi|260422615|gb|EEX15866.1| DNA repair protein RadA [Citreicella sp. SE45]
          Length = 454

 Score = 41.0 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 74/260 (28%), Gaps = 29/260 (11%)

Query: 25  RVYG--KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           +  G  KG   +L             + G   LD  LG GG   G  + + G    GK+T
Sbjct: 46  KSLGNAKGRAARLTDLSHPEAPPPRTACGIGELDRVLG-GGLVPGSAILVGGDPGIGKST 104

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L   A   + G    +   E A   +  R   +DL    +         L      + 
Sbjct: 105 LLLQAAAAFARAGLKVIYASGEEASAQVRMRAQRLDLAQAPVQLAAETN--LRDIVTTLE 162

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                + ++DS+  +            +     A        +LT+        ++ +  
Sbjct: 163 QERPALAIVDSIQTMWADNVASAPGSVAQVRAAAH-------ELTTFAKSRNTSVIMVGH 215

Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262
           +     +         G   ++      L               G+Q R+         P
Sbjct: 216 VTKDGQI--------AGPRVVEHMVDTVLYFEGER---------GHQFRILRSVKNRFGP 258

Query: 263 FKQVEFDIMYGEGISFFGEL 282
             ++    M G G++  G  
Sbjct: 259 ADEIGVFEMTGAGLAEVGNP 278


>gi|18873779|gb|AAL16366.1| KaiC [Nostoc linckia]
          Length = 209

 Score = 41.0 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 52/150 (34%), Gaps = 24/150 (16%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ----SQK 93
           +  +  G+E + +   G D  +  GG P GR   I G   +GKT L+L  +        +
Sbjct: 11  KAPLIVGVEKIRTMIEGFDD-ISHGGLPIGRTTLISGTSGTGKTLLSLQFLYNGITYFDE 69

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLIS------QPDTGEQALEI----------- 136
            G    F ++   +    A   G +L  L+              +  +I           
Sbjct: 70  PGVFVTFEESPSDIIKN-AHVFGWNLPRLIEEGKLFILDASPDPEGQDIVGNFDLSALIE 128

Query: 137 -TDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
                +R      + IDS+ A+  + E  G
Sbjct: 129 RLQYAIRKYKAKRVSIDSITAVFQQYEAMG 158


>gi|323525475|ref|YP_004227628.1| hypothetical protein BC1001_1124 [Burkholderia sp. CCGE1001]
 gi|323382477|gb|ADX54568.1| hypothetical protein BC1001_1124 [Burkholderia sp. CCGE1001]
          Length = 279

 Score = 41.0 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 9/135 (6%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE-IYGPESSG 79
           SQ++R       M  G++ +      VV SG   LD  L   G+P G + E +     +G
Sbjct: 14  SQLRRQ------MWQGNELAEV-DTRVVPSGYTALDQVLPGKGWPAGSLTELLVEHWGAG 66

Query: 80  K-TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           +   LA      +++ G     V   +   +   +  GVD++ +L  + D  +     T 
Sbjct: 67  ELRLLARALCHLTKQAGRHVMLVAPPYQPCAAALKAWGVDVERVLWVRSDEDKALWAATQ 126

Query: 139 MLVRSGAVDIIVIDS 153
            L + G   ++V  S
Sbjct: 127 ALKQDGIGAVLVWLS 141


>gi|269792309|ref|YP_003317213.1| DNA repair protein RadA [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269099944|gb|ACZ18931.1| DNA repair protein RadA [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 450

 Score = 41.0 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 14/117 (11%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            + SG   LD+ LG G  P G +V + G    GK+TL L + +   + G    +V  E  
Sbjct: 64  RILSGLPDLDLVLGGGWLP-GGVVLLGGEPGVGKSTLLLQSCSAVAQGGTKVVYVSGEET 122

Query: 107 LDSIYARK------LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
              I +R       LG + K L+         A E       +   +++V+DSV AL
Sbjct: 123 PSQIASRAKRLQLTLGENFKVLVCDDVMKAIGAAE-------AHGAELLVVDSVQAL 172


>gi|21674021|ref|NP_662086.1| DNA repair protein RadA [Chlorobium tepidum TLS]
 gi|21647169|gb|AAM72428.1| DNA repair protein RadA [Chlorobium tepidum TLS]
          Length = 456

 Score = 41.0 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 77/242 (31%), Gaps = 17/242 (7%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   LD  LG GG  +   + + G    GK+TL L  +   +  G    +V  E + + 
Sbjct: 73  TGIGELDRVLG-GGLMEASAILVGGEPGIGKSTLMLQLV--PRLAGKKVLYVAGEESPNQ 129

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           I  R   + +K   +         LE     + +   +++++DS+  +            
Sbjct: 130 IRERARRLSIKAPNLRLVSEVA--LERILDAIANEQPEMVIVDSIQTVYSSDYQSSAGTI 187

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
           +     A  + +A ++    +     I    +    K             G   + Y  +
Sbjct: 188 TQIRECAASLIRAAKEQNFILLIIGHITKEGSLAGPKALEHMVDTVVQFEGENYQRYRII 247

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
           R    R G   +     G     K+ +  +       EF I          ++    V A
Sbjct: 248 RSVKNRFGPTNE----IG---VFKMGEEGLTEVSNPSEFFI-----SDRRTDVPGTAVLA 295

Query: 290 SI 291
            I
Sbjct: 296 GI 297


>gi|328774447|gb|EGF84484.1| hypothetical protein BATDEDRAFT_85216 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 422

 Score = 41.0 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT--CAFVDAE 104
           V S+G   +D  L  GG   G+I+E  G  +SGKT L     A+   +       ++D+ 
Sbjct: 88  VYSTGISKIDDML-DGGLQSGQIIEFAGLPASGKTQLCHFISAEMIASSPLLRVTYIDSG 146

Query: 105 HALDSIY 111
               +  
Sbjct: 147 GTFYASR 153


>gi|307596390|ref|YP_003902707.1| putative circadian clock protein KaiC [Vulcanisaeta distributa DSM
           14429]
 gi|307551591|gb|ADN51656.1| putative circadian clock protein, KaiC [Vulcanisaeta distributa DSM
           14429]
          Length = 345

 Score = 41.0 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 61/185 (32%), Gaps = 24/185 (12%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV---DAEHA 106
           +G   LD  +  GGF +G +  I G   +GKT  +L  +    + G    +V   +    
Sbjct: 64  TGINYLDAYILSGGFKRGEVYLIAGEAGTGKTIFSLTFLRTGAELGEVGMYVTVDEPSED 123

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           +       LG DL +          +      M        I   D    L PR ++   
Sbjct: 124 VKRGVRDALGWDLDSY---------ERSGKLIMADFRTYFRIYARDEKITLDPR-DLAKM 173

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM---------RMKIGVMFGSPETT 217
           + E +     + +   +  +   I  S   +++I +          R+K      + E  
Sbjct: 174 IIEQVKKYDVKRL--VIDPIAPLIIMSHQDVIWIREYLRELVFQLKRLKDVTTIMTSEIP 231

Query: 218 TGGNA 222
           TG   
Sbjct: 232 TGEEN 236


>gi|157146467|ref|YP_001453786.1| hypothetical protein CKO_02227 [Citrobacter koseri ATCC BAA-895]
 gi|157083672|gb|ABV13350.1| hypothetical protein CKO_02227 [Citrobacter koseri ATCC BAA-895]
          Length = 492

 Score = 41.0 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            KA++  +S I   YG+  +M+L  + ++   I  +      L+   G+ G P G I+ +
Sbjct: 189 RKAVDVRVSTIPSQYGERVVMRLLDKSNLKPDINKLGLIDEELEQLKGLIGRPHG-IILV 247

Query: 73  YGPESSGKTT 82
            GP  SGK+T
Sbjct: 248 TGPTGSGKST 257


>gi|323345226|ref|ZP_08085449.1| DNA repair protein RadA [Prevotella oralis ATCC 33269]
 gi|323093340|gb|EFZ35918.1| DNA repair protein RadA [Prevotella oralis ATCC 33269]
          Length = 464

 Score = 41.0 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 10/161 (6%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           +    + +    L+  LG GG   G IV + G    GK+TL L TI +   T     +V 
Sbjct: 74  KDEPRIDTNDTELNRVLG-GGLVPGSIVLLGGEPGIGKSTLTLQTILR--MTDRRILYVS 130

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E +   +  R   +       +     E +LE     ++    +I++IDS+  +   +E
Sbjct: 131 GEESAHQLKLRADRLGSNRQNNNVMILCETSLEHIFEHIKDTHPEIVIIDSIQTIAT-SE 189

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
           +E   G          + +    L      S   +V I  +
Sbjct: 190 VESSPG------SITQVRECAASLLRFAKTSGVPVVLIGHI 224


>gi|166033512|ref|ZP_02236341.1| hypothetical protein DORFOR_03238 [Dorea formicigenerans ATCC
           27755]
 gi|166026697|gb|EDR45454.1| hypothetical protein DORFOR_03238 [Dorea formicigenerans ATCC
           27755]
          Length = 623

 Score = 41.0 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 75/232 (32%), Gaps = 15/232 (6%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKLGVDLKN 121
            P G++  I G    GKT  A+   A              E    +       LG  +K 
Sbjct: 326 IPFGKLTIIQGNPGEGKTYFAMRLAAACTNRKPLPGMETLEPFNIIYQTAEDGLGDTVKP 385

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD----MGESLPGMQAR 177
            LI      E+ L I D        D  +  ++     R  I       +G  +   +A 
Sbjct: 386 RLIEADADLERVLVIDDRDTPLTLADERIARAIRENNARLVIIDPVQAFLGADVDMNRAN 445

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
            +    R L      + C +V I  +    G          G  ++   ++VR  +  +G
Sbjct: 446 EVRPIFRSLGDIAQATGCAIVLIGHLNKAAGTQSTYR----GLGSIDITAAVRSLLF-IG 500

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
            +KD  +       +   K+ +A P + + F +   +G  + G       + 
Sbjct: 501 KLKDSPTT----RVLIHEKSSLAPPGQSLAFSLGDEKGFEWIGAYDITADEL 548


>gi|18313597|ref|NP_560264.1| hypothetical protein PAE2799 [Pyrobaculum aerophilum str. IM2]
 gi|18161142|gb|AAL64446.1| P. aerophilum family 417, putative ATP binding [Pyrobaculum
           aerophilum str. IM2]
          Length = 403

 Score = 41.0 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 8/129 (6%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           + +     E +++G+  +D ALG GG  +G +V + GP     + L + T  +  + G  
Sbjct: 191 EKNREPPSERLTTGAPEIDEALG-GGVWRGSLVAVVGPPDGLASKLMVLTAVELSRRGSK 249

Query: 98  CAFVDAE-HALDSIYARKLGVDLKN---LLISQPDTGEQALE---ITDMLVRSGAVDIIV 150
             +   +     + +A  LGV  +         P +  ++L     +  +V  G +D+  
Sbjct: 250 VLYHHHKVVPTFTKFAEALGVKWQRPNIHWYYHPVSEHKSLTWWFKSAQMVNEGEIDVHF 309

Query: 151 IDSVAALTP 159
            D    +  
Sbjct: 310 ADQYEQVVS 318


>gi|11994867|dbj|BAB19974.1| Trad-d1 [Mus musculus]
 gi|11994872|dbj|BAB19978.1| Trad-d1 [Mus musculus]
 gi|148683733|gb|EDL15680.1| RAD51-like 3 (S. cerevisiae), isoform CRA_g [Mus musculus]
          Length = 233

 Score = 41.0 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
             +     ++S+G   LD  L   G   G + EI G   SGKT + L   A    
Sbjct: 73  EELKTSTAILSTGIGSLDKLL-DAGLYTGEVTEIVGGPGSGKTQVCLCVAANVAH 126


>gi|11994865|dbj|BAB19972.1| Trad-d3 [Mus musculus]
 gi|11994876|dbj|BAB19980.1| Trad-d3 [Mus musculus]
 gi|148683732|gb|EDL15679.1| RAD51-like 3 (S. cerevisiae), isoform CRA_f [Mus musculus]
 gi|168984317|emb|CAQ12704.1| RAD51-like 3 (S. cerevisiae) [Mus musculus]
 gi|168984446|emb|CAQ12433.1| RAD51-like 3 (S. cerevisiae) [Mus musculus]
          Length = 275

 Score = 41.0 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
             +     ++S+G   LD  L   G   G + EI G   SGKT + L   A    
Sbjct: 73  EELKTSTAILSTGIGSLDKLL-DAGLYTGEVTEIVGGPGSGKTQVCLCVAANVAH 126


>gi|325295246|ref|YP_004281760.1| circadian clock protein, KaiC [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065694|gb|ADY73701.1| putative circadian clock protein, KaiC [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 296

 Score = 41.0 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 57/184 (30%), Gaps = 33/184 (17%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIAL-------------GIGGFPKGRIVEIYGP 75
           K  +  LG        ++ V +G  G D                 +GG P+  +V + G 
Sbjct: 15  KDNVYLLGEAIERAPELKGVPTGVKGFDELFFKVEWEEGKPVKKPLGGIPEYAVVNLTGM 74

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD------SIYARKLGVDLKNLLISQP-- 127
             +GK+ +A     +    G    FV  E             A  +G+D + +  +    
Sbjct: 75  PDTGKSLMAEQFTVKQASLGQKVCFVTVESPAAFVAAGLKQRATAMGIDFEEIENNIILI 134

Query: 128 ---------DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
                    D     L+    + R+      VIDS+  L    E    +  S+       
Sbjct: 135 DAASNSKLRDDIPTMLDTLAYVYRTYHCRKTVIDSITGLFEAKE---MLARSIVRAFFNF 191

Query: 179 MSQA 182
           M + 
Sbjct: 192 MKKW 195


>gi|309803782|ref|ZP_07697868.1| DNA repair protein RadA [Lactobacillus iners LactinV 11V1-d]
 gi|308164191|gb|EFO66452.1| DNA repair protein RadA [Lactobacillus iners LactinV 11V1-d]
          Length = 459

 Score = 41.0 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 4/112 (3%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +++    L+  LG GG   G +V + G    GK+TL L  +           +V  E +
Sbjct: 74  RITTPFSELNRVLG-GGIVPGSLVLVGGDPGIGKSTLMLQIMGSIANA-HKVLYVSGEES 131

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
              I  R   + + +  +      E  +E     +     + +VIDS+  + 
Sbjct: 132 ASQIKMRAERLHISDTELL--LYSETNMENIREQIVDLKPEFLVIDSIQTMN 181


>gi|242399744|ref|YP_002995169.1| RecA superfamily ATPase implicated in signal transduction
           [Thermococcus sibiricus MM 739]
 gi|242266138|gb|ACS90820.1| RecA superfamily ATPase implicated in signal transduction
           [Thermococcus sibiricus MM 739]
          Length = 260

 Score = 41.0 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 8/104 (7%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99
            + E +E + +    +D  L +GG P+G ++ + G   SGKTT     I     +G    
Sbjct: 12  ELEEKVERIPTN--LIDHLL-MGGIPRGSVILLIGDPKSGKTTFISQFIYNQLISGANVI 68

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143
            +     L  I   +   +  +   +      + L I D   + 
Sbjct: 69  SL-----LIDIPRYEFVSNALDFGWNLITNLNERLYILDAYTQR 107


>gi|110635594|ref|YP_675802.1| contains weak similarity to RecA protein [Mesorhizobium sp. BNC1]
 gi|110286578|gb|ABG64637.1| hypothetical protein Meso_3265 [Chelativorans sp. BNC1]
          Length = 327

 Score = 41.0 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 14/111 (12%)

Query: 1   MDYRKEMNIV-DKSKALEAALSQIQRVY---------GKGAIMQLGSQGSIFEGIEVVSS 50
           M     M +  +K  AL   +++I+            G G+   L   G +  G     +
Sbjct: 1   MSGMARMAMAQEKLFALRREIAKIEGNLPERFAAPEAGAGSEAVLRHYGRLASGAGFSVT 60

Query: 51  GSLGLDIALGIGGFPKGRIVEIYG---PESSGKTTLALHTIAQSQKTGGTC 98
           G+  LD ALG GG P+  + E+ G    +S      AL   A   +TG   
Sbjct: 61  GAPRLDSALG-GGIPRAALTEVSGRATRDSGAVCGFALALAAIVSRTGAGA 110


>gi|18873735|gb|AAL16338.1| KaiC [Nostoc linckia]
 gi|18873738|gb|AAL16340.1| KaiC [Nostoc linckia]
          Length = 209

 Score = 40.6 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 52/150 (34%), Gaps = 24/150 (16%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ----SQK 93
           +  +  G+E + +   G D  +  GG P GR   I G   +GKT L+L  +        +
Sbjct: 11  KPPLIGGVEKIRTMIEGFDD-ISHGGLPIGRTTLISGTSGTGKTLLSLQFLYNGITYFDE 69

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLIS------QPDTGEQALEI----------- 136
            G    F ++   +    A   G +L  L+              +  +I           
Sbjct: 70  PGVFVTFEESPSDIIKN-AHIFGWNLPRLIEEGKLFILDASPDPEGQDIVGNFDLSALIE 128

Query: 137 -TDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
                +R      + IDS+ A+  + E  G
Sbjct: 129 RLQYAIRKYKAKRVSIDSITAVFQQYEAMG 158


>gi|312874850|ref|ZP_07734869.1| DNA repair protein RadA [Lactobacillus iners LEAF 2053A-b]
 gi|329920406|ref|ZP_08277138.1| DNA repair protein RadA [Lactobacillus iners SPIN 1401G]
 gi|311089595|gb|EFQ48020.1| DNA repair protein RadA [Lactobacillus iners LEAF 2053A-b]
 gi|328936082|gb|EGG32535.1| DNA repair protein RadA [Lactobacillus iners SPIN 1401G]
          Length = 459

 Score = 40.6 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 4/112 (3%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +++    L+  LG GG   G +V + G    GK+TL L  +           +V  E +
Sbjct: 74  RITTPFSELNRVLG-GGIVPGSLVLVGGDPGIGKSTLMLQIMGSIANA-HKVLYVSGEES 131

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
              I  R   + + +  +      E  +E     +     + +VIDS+  + 
Sbjct: 132 ASQIKMRAERLHISDTELL--LYSETNMENIREQIVDLKPEFLVIDSIQTMN 181


>gi|159040883|ref|YP_001540135.1| putative circadian clock protein, KaiC [Caldivirga maquilingensis
           IC-167]
 gi|157919718|gb|ABW01145.1| putative circadian clock protein, KaiC [Caldivirga maquilingensis
           IC-167]
          Length = 320

 Score = 40.6 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 4/77 (5%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +G   LD  L  GG  +G +  + G    GKT  +L  +      G +  ++  +   +
Sbjct: 61  PTGIAYLDALL-YGGLKRGEVYLVAGEAGLGKTIFSLKFLKTGADIGESGIYISVDEPSE 119

Query: 109 SIYA---RKLGVDLKNL 122
            +       LG DL   
Sbjct: 120 DVKRGAYEALGWDLDAY 136


>gi|23630197|gb|AAL16335.1| KaiC [Nostoc linckia]
          Length = 208

 Score = 40.6 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 49/149 (32%), Gaps = 22/149 (14%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT--- 94
             +   G+E + +   G D  +  GG P GR   + G   +GKT L+L  +         
Sbjct: 10  NNTQIGGVEKIRTMIEGFDD-ISHGGLPIGRTTLVSGTSGTGKTLLSLQFLYNGITRFDE 68

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLIS------QPDTGEQALEI------------ 136
            G     +   +     A   G +L+ L+              +  +I            
Sbjct: 69  AGVFVTFEESPSDIIKNAHIFGWNLQRLIDEGKLFILDASPDPEGQDIVGNFDLSALIER 128

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
               +R      + IDS+ A+  + E  G
Sbjct: 129 LQYAIRKYKAQRVSIDSITAVFQQYEAMG 157


>gi|288818304|ref|YP_003432652.1| RecA-superfamily ATPase [Hydrogenobacter thermophilus TK-6]
 gi|288787704|dbj|BAI69451.1| RecA-superfamily ATPase [Hydrogenobacter thermophilus TK-6]
 gi|308751901|gb|ADO45384.1| putative circadian clock protein, KaiC [Hydrogenobacter
           thermophilus TK-6]
          Length = 294

 Score = 40.6 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 66/202 (32%), Gaps = 44/202 (21%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIAL-------------GIGGFPKGRIVEIYGPES 77
           +I   G        +  V +G  GLD                 +GG P   +  I G   
Sbjct: 20  SIWVAGEAVKKAPKMYGVPTGVEGLDHLFFTSEVQEGKVVKKLLGGIPAYSVTNITGVSD 79

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALD------SIYARKLGVDLKNLLISQP---- 127
           +GKT +A     +  + G   AF+  E             A+ +GVD + +         
Sbjct: 80  TGKTLIAEQYTIKQAERGEATAFITVEAPAPFVSVGLRERAKAMGVDFEKVQDKIVLIDA 139

Query: 128 -------DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
                  +     L      +++  V  +VIDSV  L    E+              L  
Sbjct: 140 ASHSKLRENIPDLLATLAYAIKNYKVRHVVIDSVTGLYEAREM--------------LAR 185

Query: 181 QALRKLTSSISRSKCILVFINQ 202
             +R+L + + +     +FI+Q
Sbjct: 186 TVVRQLFNFMKKWYQTAIFISQ 207


>gi|213582512|ref|ZP_03364338.1| DNA repair protein RadA [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 122

 Score = 40.6 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           + +L       E +   S+G    D  LG GG   G  + I G   +GK+TL L T+ + 
Sbjct: 63  VQKLSDIS--LEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKL 119

Query: 92  QKT 94
            + 
Sbjct: 120 AEQ 122


>gi|312130236|ref|YP_003997576.1| DNA repair protein rada [Leadbetterella byssophila DSM 17132]
 gi|311906782|gb|ADQ17223.1| DNA repair protein RadA [Leadbetterella byssophila DSM 17132]
          Length = 455

 Score = 40.6 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 68/212 (32%), Gaps = 20/212 (9%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +L SQ    E   ++ +     +  LG GG   G ++ + G    GK+TL L        
Sbjct: 59  RLLSQIDHAEKYRII-TEDEEFNRVLG-GGLVPGSLILVGGEPGIGKSTLMLQLAL--GL 114

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
                 +V  E +   I  R   + LKN         E A ++    +     D+++IDS
Sbjct: 115 KDYNILYVSGEESEQQIKMRAERIPLKNERCYV--LTETATDVIFKHIEMIEPDVVIIDS 172

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM-------K 206
           +  L       G    S     A  + +           S   ++ I  +         K
Sbjct: 173 IQTLVSPLVDSGAGSVSQVKECAAEIMRF-------AKESDVPVILIGHITKEGSLAGPK 225

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           +            G+    Y  +R    R G+
Sbjct: 226 VLEHMVDTVLQFEGDRFMTYRILRTIKNRFGN 257


>gi|146420325|ref|XP_001486119.1| hypothetical protein PGUG_01790 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 504

 Score = 40.6 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 36/112 (32%), Gaps = 10/112 (8%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ--SQKTGGTCAFVDAEH 105
           VS+G   LD  L  GG   G I EI+G   +GK+ L L                ++  E 
Sbjct: 89  VSTGIESLDQRLN-GGAKVGDITEIFGASGTGKSQLLLQMSINSVKLHESSKSVYISTES 147

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            + +    ++                    ++         D I+   + AL
Sbjct: 148 VIATSRLEEMAGR-------NAAPHIMENIMSVYCSDLEHQDHILYTQLPAL 192


>gi|327480945|gb|AEA84255.1| cell division inhibitor SulA, putative [Pseudomonas stutzeri DSM
           4166]
          Length = 205

 Score = 40.6 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 2/113 (1%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI-YGPESSGKTTLALHTIAQSQKTGGT 97
            ++        +G   LD  L  GG+P   + EI +     G+  L   T+A+    G  
Sbjct: 20  QAVASPTAAQPTGHAMLDALLPAGGWPDSALSEILFAAPGIGELRLLWPTLARLTSAGER 79

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
              V   H          GVDL +L+I Q    + AL   +  +RSG+   ++
Sbjct: 80  VVLVAPPHRPCPQAWLAAGVDLHHLVIVQAKDRD-ALWSAEQCLRSGSCAAVL 131


>gi|328874953|gb|EGG23318.1| AAA ATPase domain-containing protein [Dictyostelium fasciculatum]
          Length = 410

 Score = 40.6 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 58/180 (32%), Gaps = 35/180 (19%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHALDSIYARKL 115
           GGF    I EI G   SGKT L +      Q         G   ++  E         K+
Sbjct: 59  GGFTPNGITEISGEAGSGKTQLCMQLCFHVQLPYELGGLNGGAIYIGTETPFPMNRFLKI 118

Query: 116 GVD--------------------LKNLLISQPDTGEQALEIT----DMLVRSGAVDIIVI 151
             +                       ++  + +     L++       L+++    +++I
Sbjct: 119 SQNRLAVINQARQENGLPPIDVPPDMVMTRRANDINNLLDMLTKNFHELIKNHVTKLLII 178

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211
           DS+AAL     I  + G      +   + +   +L     +    ++ INQ+       F
Sbjct: 179 DSIAAL-----IRSEFGNENILEKTNKLWELSNQLRIISEQYGITILVINQVTDYFEPTF 233


>gi|301310031|ref|ZP_07215970.1| putative replicative DNA helicase [Bacteroides sp. 20_3]
 gi|300831605|gb|EFK62236.1| putative replicative DNA helicase [Bacteroides sp. 20_3]
          Length = 485

 Score = 40.6 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 74/213 (34%), Gaps = 19/213 (8%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +G  GLD  +  GG   G +         GKT  AL     + K G        E + 
Sbjct: 200 IHTGLGGLDRLM--GGLRTGSLHVFAARPGMGKTAFALFMAVNAAKQGVPVCVYSLEMSR 257

Query: 108 DSIYARKLG--VDLKNLLISQPDTGEQAL--------EITDMLVRSGAVDIIVIDSVAAL 157
           + +  R LG   D++   I++    E+ +        ++ ++ +       I ID +   
Sbjct: 258 EQLIFRMLGQIADVEPSKITKGTATEEEMRALEEASRQLKELPICINQRSDIQIDEIRCD 317

Query: 158 TPRAEIEGD----MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
                 +G     + + L  +      Q   +  S+I+R   I     ++ + +      
Sbjct: 318 ISLRRRQGKCSLAIIDYLQLVNRDDKGQTPNEAISNITRKAKITAMDEEIPIVLLCQLNR 377

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
              T G  + +   S   D+R  GSI+      
Sbjct: 378 NCETRGTYSFRHQLS---DLRDSGSIEQDADTV 407


>gi|256840171|ref|ZP_05545680.1| replicative DNA helicase [Parabacteroides sp. D13]
 gi|256739101|gb|EEU52426.1| replicative DNA helicase [Parabacteroides sp. D13]
          Length = 485

 Score = 40.6 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 74/213 (34%), Gaps = 19/213 (8%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +G  GLD  +  GG   G +         GKT  AL     + K G        E + 
Sbjct: 200 IHTGLGGLDRLM--GGLRTGSLHVFAARPGMGKTAFALFMAVNAAKQGVPVCVYSLEMSR 257

Query: 108 DSIYARKLG--VDLKNLLISQPDTGEQAL--------EITDMLVRSGAVDIIVIDSVAAL 157
           + +  R LG   D++   I++    E+ +        ++ ++ +       I ID +   
Sbjct: 258 EQLIFRMLGQIADVEPSKITKGTATEEEMRALEEASRQLKELPICINQRSDIQIDEIRCD 317

Query: 158 TPRAEIEGD----MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
                 +G     + + L  +      Q   +  S+I+R   I     ++ + +      
Sbjct: 318 ISLRRRQGKCSLAIIDYLQLVNRDDKGQTPNEAISNITRKAKITAMDEEIPIVLLCQLNR 377

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
              T G  + +   S   D+R  GSI+      
Sbjct: 378 NCETRGTYSFRHQLS---DLRDSGSIEQDADTV 407


>gi|298376727|ref|ZP_06986682.1| replicative DNA helicase [Bacteroides sp. 3_1_19]
 gi|298266605|gb|EFI08263.1| replicative DNA helicase [Bacteroides sp. 3_1_19]
          Length = 485

 Score = 40.6 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 74/213 (34%), Gaps = 19/213 (8%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +G  GLD  +  GG   G +         GKT  AL     + K G        E + 
Sbjct: 200 IHTGLGGLDRLM--GGLRTGSLHVFAARPGMGKTAFALFMAVNAAKQGVPVCVYSLEMSR 257

Query: 108 DSIYARKLG--VDLKNLLISQPDTGEQAL--------EITDMLVRSGAVDIIVIDSVAAL 157
           + +  R LG   D++   I++    E+ +        ++ ++ +       I ID +   
Sbjct: 258 EQLIFRMLGQIADVEPSKITKGTATEEEMRALEEASRQLKELPICINQRSDIQIDEIRCD 317

Query: 158 TPRAEIEGD----MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
                 +G     + + L  +      Q   +  S+I+R   I     ++ + +      
Sbjct: 318 ISLRRRQGKCSLAIIDYLQLVNRDDKGQTPNEAISNITRKAKITAMDEEIPIVLLCQLNR 377

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
              T G  + +   S   D+R  GSI+      
Sbjct: 378 NCETRGTYSFRHQLS---DLRDSGSIEQDADTV 407


>gi|152989761|ref|YP_001355483.1| circadian clock protein KaiC [Nitratiruptor sp. SB155-2]
 gi|151421622|dbj|BAF69126.1| circadian clock protein KaiC [Nitratiruptor sp. SB155-2]
          Length = 462

 Score = 40.6 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 72/211 (34%), Gaps = 27/211 (12%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E + S   G D  +  GG PK   + I G   SGKTT +L    ++ K       +   
Sbjct: 1   MERIKSYIFGFDE-MSYGGLPKYSNIIIGGAPGSGKTTFSLQIAFENAKKEKKKTILFTT 59

Query: 105 HALDS-----------IYARKLGVDLKNLLISQPD----TGEQALEITDMLVRSGAVDII 149
            +               + ++L      +    P       ++ LE  +  ++    D++
Sbjct: 60  VSEPPYKMIRFLSEFTFFDKELLNTYVIIKDISPIIKRGAKKELLEFIETSIKEHKPDLV 119

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           +IDS  +L         + ES      +   + +  LTS +S  +   +F+ +       
Sbjct: 120 IIDSFKSL------SEVLFESH-----QERKKYVYDLTSFLSVWQITSLFVGEYFFDDFE 168

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
            F     T G   L       L    +  +K
Sbjct: 169 HFAEFSITDGIIYLHGTDEFSLQKNYIQILK 199


>gi|291524660|emb|CBK90247.1| RecA-family ATPase [Eubacterium rectale DSM 17629]
          Length = 633

 Score = 40.6 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 74/232 (31%), Gaps = 15/232 (6%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKLGVDLKN 121
            P G++  + G    GKTT AL   A     G             +       LG  +K 
Sbjct: 329 IPFGKVTIVQGNPGEGKTTFALRLAAACTTGGTLPGMKPLPPFQVIYQTAEDGLGDTVKP 388

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD----MGESLPGMQAR 177
            LI      ++ L I +        D  +  ++     R  I       MGE     +A 
Sbjct: 389 RLIEAAADLDRVLVIDEAKRELTLSDERIEKAITQNGARLIILDPIQAYMGEKTDMNRAN 448

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
            +    R+L     R+ C ++ I    +       S     G    +  +   L I R  
Sbjct: 449 EVRPMFRRLADVAERTGCAVILI--GHLNKAAGGQSAYRGLGSIDFRAAARSVLLIGR-- 504

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
            +K + ++      +   K+ +A   K V F +    G  + GE      + 
Sbjct: 505 -VKREPNV----RVIVHDKSSLAPEGKPVAFCLDPETGFEWIGEYDITADEL 551


>gi|309804741|ref|ZP_07698806.1| DNA repair protein RadA [Lactobacillus iners LactinV 09V1-c]
 gi|308166133|gb|EFO68351.1| DNA repair protein RadA [Lactobacillus iners LactinV 09V1-c]
          Length = 459

 Score = 40.6 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 4/112 (3%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +++    L+  LG GG   G +V + G    GK+TL L  +           +V  E +
Sbjct: 74  RITTPFSELNRVLG-GGIVPGSLVLVGGDPGIGKSTLMLQIMGSISNA-HKVLYVSGEES 131

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
              I  R   + + +  +      E  +E     +     + +VIDS+  + 
Sbjct: 132 ASQIKMRAERLHISDTELL--LYSETNMENIREQIVDLKPEFLVIDSIQTMN 181


>gi|166077987|gb|ABY81063.1| disrupted meiotic cDNA 1 protein [Elymus hystrix]
          Length = 138

 Score = 40.6 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 18/150 (12%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N++ ++  T E    +       +      ++++DSV AL          G      + 
Sbjct: 1   DNIIYARAYTYEHQHNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAERQ 56

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR 234
           + ++Q L +LT         +   NQ+    G       P+   GG+ L   +++RL +R
Sbjct: 57  QKLAQMLSRLTKITEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHATTIRLMLR 116

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           +           G Q   K+         +
Sbjct: 117 KGK---------GEQRVCKIFDAPNLPEGE 137


>gi|312137342|ref|YP_004004679.1| circadian clock protein, kaic [Methanothermus fervidus DSM 2088]
 gi|311225061|gb|ADP77917.1| putative circadian clock protein, KaiC [Methanothermus fervidus DSM
           2088]
          Length = 246

 Score = 40.6 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 83/260 (31%), Gaps = 61/260 (23%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGGTC 98
            + ++ V +G  G+D  L  GG P+  IV + G   +GKT      + +        G  
Sbjct: 1   MKNMKKVKTGIPGMDDIL-HGGIPERNIVLLSGGPGTGKTIFCQQFLYKGVKEYNEPGIL 59

Query: 99  AFVDAEHALDSIYARKLGVDL--------------------------KNLLISQPDTGEQ 132
             ++          ++ G D+                          +  ++  P+   +
Sbjct: 60  VALEEHPVQIRENMKQFGWDVRELEEEEEKFVIVDAFTSGIGRAAKREKYIVKDPNDERE 119

Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
            +++    +       + IDSV  L     I   M          +  + +  L   IS 
Sbjct: 120 LIDVLRTAINDIGAKRVGIDSVTTLY----INKPM----------MARKTVFLLKRVISG 165

Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS--SVRLDIRRVGSIKDKDSITGNQT 250
             C  +F +Q+ +         E   GG  ++      +RLD+       D+      ++
Sbjct: 166 LGCTAIFTSQISV--------GERGFGGPGVEHAVDGIIRLDL-------DEIKGELKRS 210

Query: 251 RVKVVKNKMASPFKQVEFDI 270
            +           K+  FDI
Sbjct: 211 LIVWKMRGTNHSLKRRPFDI 230


>gi|194302139|gb|ACF40975.1| RAD51D transcript variant delta 9,10 [Mus musculus]
          Length = 237

 Score = 40.6 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
             +     ++S+G   LD  L   G   G + EI G   SGKT + L   A    
Sbjct: 73  EELKTSTTILSTGIGSLDKLL-DAGLYTGEVTEIVGGPGSGKTQVCLCVAANVAH 126


>gi|9886985|gb|AAG01686.1|AF222602_1 KaiC [Nodularia spumigena PCC 73104]
          Length = 269

 Score = 40.6 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 53/164 (32%), Gaps = 29/164 (17%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           I++        Q     +   G+E + +   G D  +  GG P GR   + G   +GKT 
Sbjct: 2   IEKD-------QAAPNNTQMAGVEKIRTMIEGFDD-ISHGGLPVGRTTLVSGTSGTGKTL 53

Query: 83  LALHTIAQ---SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS------QPDTGEQA 133
            +L  +          G     +   +     A+  G +L+ L+              + 
Sbjct: 54  FSLQFLYNGITRSDEPGVFVTFEESPSDIIKNAQIFGWNLQRLIDEGKLFILDASPDPEG 113

Query: 134 LEI------------TDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
            +I                +R      + IDS+ A+  + E  G
Sbjct: 114 QDIVGNFDLSALIERLQYAIRKYKAQRVSIDSITAVFQQYEAMG 157


>gi|20091875|ref|NP_617950.1| flagellar accessory protein FlaH [Methanosarcina acetivorans C2A]
 gi|19917069|gb|AAM06430.1| flagella accessory protein H [Methanosarcina acetivorans C2A]
          Length = 238

 Score = 40.6 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
           G+  +  +++SSG+  +D  LG  G P G +V I G   +GK+ L    +          
Sbjct: 2   GASEDKNKIISSGNDEIDKKLGE-GIPLGSLVLIEGENDTGKSVLCQQMVYGGLNQLHRI 60

Query: 99  AFVDAEHALDSIYARKLGVDLK 120
           A+   E+ + S+ A+   + L 
Sbjct: 61  AYYSTENTIKSMLAQMDSLSLD 82


>gi|34098762|sp|Q9WYK4|Y370_THEMA RecName: Full=UPF0273 protein TM_0370
          Length = 242

 Score = 40.6 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 3/80 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+ V +G  G+D  L  GG P+  IV I G   +GKT  +   I    + G    +V  E
Sbjct: 2   IKRVKTGIPGMDEIL-HGGIPERNIVLISGGPGTGKTIFSQQFIWNGLQMGEPGIYVALE 60

Query: 105 --HALDSIYARKLGVDLKNL 122
                        G ++   
Sbjct: 61  EHPVQVKKNMEVFGWNVDPF 80


>gi|170289887|ref|YP_001736703.1| hypothetical protein Kcr_0260 [Candidatus Korarchaeum cryptofilum
           OPF8]
 gi|170173967|gb|ACB07020.1| RecA-superfamily ATPase implicated in signal transduction
           [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 248

 Score = 40.6 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 3/83 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E V SG  G D  L  GG PK  IV + G   +GKT  +   + Q    G     V  E
Sbjct: 3   VERVKSGIPGFDE-LVNGGIPKRNIVLLSGGPGTGKTIFSQQFLYQGLALGEPGVLVTLE 61

Query: 105 --HALDSIYARKLGVDLKNLLIS 125
                        G D++     
Sbjct: 62  EHPVQVRREMASFGWDVRKYEEE 84


>gi|14520476|ref|NP_125951.1| hypothetical protein PAB2180 [Pyrococcus abyssi GE5]
 gi|34098758|sp|Q9V216|Y258_PYRAB RecName: Full=UPF0273 protein PYRAB02580
 gi|5457691|emb|CAB49182.1| Hypothetical protein, containing ATP/GTP-binding site motif A
           [Pyrococcus abyssi GE5]
          Length = 247

 Score = 40.6 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 79/240 (32%), Gaps = 33/240 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE-- 104
            + +G  G+D  L  GG P+  +V + G   +GKT  +   +    + G    +V  E  
Sbjct: 4   RIKTGIPGMDDIL-HGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLQMGEPGIYVALEEH 62

Query: 105 HALDSIYARKLGVD------------LKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
                    + G D            +         + E    I   L        ++  
Sbjct: 63  PVQVRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQ 122

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           ++  +  +  +   +        A   S  + +L   ++ + C  +F++Q+ +       
Sbjct: 123 AIRDINAKRVVVDSVTTLYINKPALARS-IILQLKRVLAGTGCTSIFVSQISV------- 174

Query: 213 SPETTTGGNALKFYS--SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
             E   GG  ++      +RLD+       D+      ++ +       +   ++  F+I
Sbjct: 175 -GERGFGGPGVEHGVDGIIRLDL-------DEIDGELKRSLIVWKMRGTSHSMRRHPFEI 226


>gi|307566359|ref|ZP_07628798.1| DNA repair protein RadA [Prevotella amnii CRIS 21A-A]
 gi|307344936|gb|EFN90334.1| DNA repair protein RadA [Prevotella amnii CRIS 21A-A]
          Length = 465

 Score = 40.6 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 56/181 (30%), Gaps = 17/181 (9%)

Query: 28  GKGAIMQLGSQGSIFEGI-----EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           G G I  L  +  +   I       +      L+  LG GG   G I+ + G    GK+T
Sbjct: 58  GMGLIAGLAHKPQLLCDISSTDDPRIDMNDAELNRVLG-GGMVPGSIILLGGEPGIGKST 116

Query: 83  LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142
           L L TI              +     +    +     KN+  +     E +LE      +
Sbjct: 117 LTLQTILHLNFK----VLYVSGEESPNQIKMRAERITKNIPNNVVILSETSLEHIFEHAK 172

Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202
                ++VIDS+  ++           +     A         L      S   ++ I  
Sbjct: 173 EVMPQLLVIDSIQTISTEEVDSSPGSITQVRECAAA-------LLRFAKTSGVPVILIGH 225

Query: 203 M 203
           +
Sbjct: 226 I 226


>gi|309808430|ref|ZP_07702329.1| DNA repair protein RadA [Lactobacillus iners LactinV 01V1-a]
 gi|325913118|ref|ZP_08175488.1| DNA repair protein RadA [Lactobacillus iners UPII 60-B]
 gi|308168258|gb|EFO70377.1| DNA repair protein RadA [Lactobacillus iners LactinV 01V1-a]
 gi|325477539|gb|EGC80681.1| DNA repair protein RadA [Lactobacillus iners UPII 60-B]
          Length = 459

 Score = 40.6 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 4/112 (3%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +++    L+  LG GG   G +V + G    GK+TL L  +           +V  E +
Sbjct: 74  RITTPFSELNRVLG-GGIVPGSLVLVGGDPGIGKSTLMLQIMGSISNA-HKVLYVSGEES 131

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
              I  R   + + +  +      E  +E     +     + +VIDS+  + 
Sbjct: 132 ASQIKMRAERLHISDTELL--LYSETNMENIREQIVDLKPEFLVIDSIQTMN 181


>gi|225630590|ref|YP_002727381.1| DNA repair protein RadA [Wolbachia sp. wRi]
 gi|225592571|gb|ACN95590.1| DNA repair protein RadA [Wolbachia sp. wRi]
          Length = 447

 Score = 40.6 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 60/148 (40%), Gaps = 9/148 (6%)

Query: 17  EAALSQIQRVYGKGAI-----MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  + +I    GK +I     ++  S   I      + +G   LD   G GG  +G  + 
Sbjct: 28  DTVVEEIAVKTGKRSISAPILIKTLSGSEIITPSRFL-TGIEELDRVFG-GGIVQGASIL 85

Query: 72  IYGPESSGKTTLALHTIAQ-SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           I G    GK+TL L   A   Q +   C +V  E +L+ +  R   + +    I    + 
Sbjct: 86  IGGEPGIGKSTLLLRIAANVVQLSSFECLYVSGEESLEQVSLRAKRLKINEPKIKL-LST 144

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALT 158
               ++   +  + ++  +VIDS+  + 
Sbjct: 145 VSLTDVVATIKENKSIKFLVIDSIQTMY 172


>gi|171912721|ref|ZP_02928191.1| hypothetical protein VspiD_16115 [Verrucomicrobium spinosum DSM
           4136]
          Length = 489

 Score = 40.6 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 3/118 (2%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           G  GLD+ L  GG P  R+  + G    GKTTLAL  + +    G    ++      + I
Sbjct: 2   GVEGLDVVL-CGGLPSHRLYLVKGDPGVGKTTLALQFLMKGANQGEKVLYISLSETKNEI 60

Query: 111 Y--ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
              A   G DL  + + +  + E+ +            ++ +  ++ AL    E  G 
Sbjct: 61  LAVAESHGWDLSAVNLYELSSIEEKIRGDSESTFFHPSEVELNRTIGALIEEVERIGP 118


>gi|331027960|ref|YP_004421510.1| DNA helicase [Synechococcus phage S-CBS2]
 gi|294805573|gb|ADF42412.1| DNA helicase [Synechococcus phage S-CBS2]
          Length = 573

 Score = 40.6 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 6/78 (7%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPK-----GRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
            ++ VS+G L LDI +  GG        GR+  + G    GKT + +   A +   G T 
Sbjct: 259 SVKPVSTGILALDIDM-EGGLRPDDLGGGRVFTLCGRTGDGKTQVGVQIAAAAALGGVTV 317

Query: 99  AFVDAEHALDSIYARKLG 116
            F+ AE    SIYAR   
Sbjct: 318 GFISAELDEGSIYARLWS 335


>gi|294496442|ref|YP_003542935.1| circadian clock protein, KaiC [Methanohalophilus mahii DSM 5219]
 gi|292667441|gb|ADE37290.1| putative circadian clock protein, KaiC [Methanohalophilus mahii DSM
           5219]
          Length = 453

 Score = 40.6 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 5/159 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V +G   +D  L  GG P G  + + G   +GKT +    I Q  + G  CA +    ++
Sbjct: 237 VETGIDEVDKMLN-GGIPAGSSILVGGEPGTGKTIMGWQFIQQGLENGENCAIITFYESV 295

Query: 108 DSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           D I      LG DL+  +  +  +                    +++       R  I+G
Sbjct: 296 DQIIKATGDLGWDLQPYIDEEKLSIITYETEKICYAEYSNRISNIVEEKK--PSRLLIDG 353

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
            +   +  +        L  L   +       +F  ++ 
Sbjct: 354 LVNVEITIIDPVKRRGFLHSLVGYLKSHSVTTLFTTELF 392


>gi|58698556|ref|ZP_00373457.1| DNA repair protein RadA [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58534938|gb|EAL59036.1| DNA repair protein RadA [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 450

 Score = 40.6 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 60/148 (40%), Gaps = 9/148 (6%)

Query: 17  EAALSQIQRVYGKGAI-----MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  + +I    GK +I     ++  S   I      + +G   LD   G GG  +G  + 
Sbjct: 31  DTVVEEIAVKTGKRSISAPILIKTLSGSEIITPSRFL-TGIEELDRVFG-GGIVQGASIL 88

Query: 72  IYGPESSGKTTLALHTIAQ-SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130
           I G    GK+TL L   A   Q +   C +V  E +L+ +  R   + +    I    + 
Sbjct: 89  IGGEPGIGKSTLLLRIAANVVQLSSFECLYVSGEESLEQVSLRAKRLKINEPKIKL-LST 147

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALT 158
               ++   +  + ++  +VIDS+  + 
Sbjct: 148 VSLTDVVATIKENKSIKFLVIDSIQTMY 175


>gi|325854304|ref|ZP_08171503.1| DNA repair protein RadA [Prevotella denticola CRIS 18C-A]
 gi|325484098|gb|EGC87032.1| DNA repair protein RadA [Prevotella denticola CRIS 18C-A]
          Length = 466

 Score = 40.6 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 56/150 (37%), Gaps = 12/150 (8%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
            L+  LG GG   G IV + G    GK+TL L TI    +      +V  E +   I  R
Sbjct: 90  ELNRVLG-GGLVPGSIVLLGGEPGIGKSTLTLQTILHMTQ---HVLYVSGEESPHQIKMR 145

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
            + +  K++  +     E +LE     +R    +++VIDS+  ++           +   
Sbjct: 146 AVRI-TKDITENVIILSETSLERIFEHIRDVQPELVVIDSIQTISTEDVDSSPGSITQVR 204

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQM 203
             A         L      S   ++ I  +
Sbjct: 205 ECASA-------LLRFAKTSGVPVILIGHI 227


>gi|332158440|ref|YP_004423719.1| hypothetical protein PNA2_0799 [Pyrococcus sp. NA2]
 gi|331033903|gb|AEC51715.1| hypothetical protein PNA2_0799 [Pyrococcus sp. NA2]
          Length = 247

 Score = 40.6 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 79/240 (32%), Gaps = 33/240 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE-- 104
            V +G  GLD  L  GG P+  +V + G   +GKT  +   +    K G    +V  E  
Sbjct: 4   RVKTGIPGLDEIL-HGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH 62

Query: 105 HALDSIYARKLGVD------------LKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
                    + G D            +         + E    I   L        ++  
Sbjct: 63  PVQIRQNMAQFGWDVREYEERGLFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQ 122

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           ++  +  +  +   +        A   S  + +L   ++ + C  +F++Q+ +       
Sbjct: 123 AIRDINAKRVVIDSVTTLYINKPAMARS-IILQLKRVLAGTGCTSIFVSQISV------- 174

Query: 213 SPETTTGGNALKFYS--SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
             E   GG  ++      +RLD+       D+      ++ +       +   ++  F+I
Sbjct: 175 -GERGFGGPGVEHGVDGIIRLDL-------DEIDGELKRSLIVWKMRGTSHSMRRHPFEI 226


>gi|190345755|gb|EDK37692.2| hypothetical protein PGUG_01790 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 504

 Score = 40.6 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 36/112 (32%), Gaps = 10/112 (8%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ--SQKTGGTCAFVDAEH 105
           VS+G   LD  L  GG   G I EI+G   +GK+ L L                ++  E 
Sbjct: 89  VSTGIESLDQRLN-GGAKVGDITEIFGASGTGKSQLLLQMSINSVKLHESSKSVYISTES 147

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            + +    ++                    ++         D I+   + AL
Sbjct: 148 VIATSRLEEMAGR-------NAAPHIMENIMSVYCSDLEHQDHILYTQLPAL 192


>gi|87125178|ref|ZP_01081024.1| putative DNA repair protein RadA [Synechococcus sp. RS9917]
 gi|86166947|gb|EAQ68208.1| putative DNA repair protein RadA [Synechococcus sp. RS9917]
          Length = 409

 Score = 40.6 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 63/158 (39%), Gaps = 4/158 (2%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           +       + ++ ++SG   LD  LG GG   G +V + G    GK+TL L + A   + 
Sbjct: 1   MAIDALADQPLQRLASGYGELDRVLG-GGVVPGSLVLVGGDPGIGKSTLLLQSAAAMAQQ 59

Query: 95  GGTCAFVDAEHALD-SIYARKLGVDLKNL-LISQPDTGEQALEITDMLVRSGAVDIIVID 152
                    E A    +  ++L   +  + + S     E  LE+    + +   D+ +ID
Sbjct: 60  RSVLYVSAEESAAQVKLRWQRLQDPVGGVAVQSLQLLAETDLELVLEELEALQPDVAIID 119

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           S+ AL   AE+    G      +     Q L K  ++ 
Sbjct: 120 SIQALH-DAELSSAPGSVAQVRECAAALQRLAKRQNTA 156


>gi|310815676|ref|YP_003963640.1| DNA repair protein RadA [Ketogulonicigenium vulgare Y25]
 gi|308754411|gb|ADO42340.1| DNA repair protein RadA [Ketogulonicigenium vulgare Y25]
          Length = 461

 Score = 40.6 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 3/157 (1%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           +G +++L    S+ E      +G   LD  LG GG      V + G    GK+TL L   
Sbjct: 53  RGKMLELTDLKSMAEAPPRTEAGVAELDRVLG-GGLVHASAVLLGGDPGIGKSTLLLQAA 111

Query: 89  AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
           A+  + G    +V  E +   +  R   + L +  +      E  L      + +   D+
Sbjct: 112 ARFARNGLKVIYVTGEESAAQVQLRAQRLGLADSPVLLAS--ESNLRDILTTLEAEKPDL 169

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
            +IDS+  +            S     A  +    ++
Sbjct: 170 AIIDSIQTVWIDTIESPPGSVSQVRASAHELVNMAKR 206


>gi|282165194|ref|YP_003357579.1| hypothetical protein MCP_2524 [Methanocella paludicola SANAE]
 gi|282157508|dbj|BAI62596.1| hypothetical protein [Methanocella paludicola SANAE]
          Length = 254

 Score = 40.6 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 45/131 (34%), Gaps = 1/131 (0%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            + +G  GLD   G GGF KG    + GP  +GKTT  L  +        +  FV  E  
Sbjct: 5   RLKTGIPGLDKMTG-GGFLKGDTTLVTGPPGTGKTTFGLQFLMHGVLESQSGVFVTVEET 63

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
            + I    L        +            ++ML   GA  +  +D + ++     +   
Sbjct: 64  PEKIANDALNFGWDLRKLEAEGRLRLYQLRSEMLQSGGAPIMQCLDVINSVKAERVVIDP 123

Query: 167 MGESLPGMQAR 177
           +      +   
Sbjct: 124 ISLYSMNVHDP 134


>gi|149377415|ref|ZP_01895159.1| hypothetical protein MDG893_09095 [Marinobacter algicola DG893]
 gi|149358339|gb|EDM46817.1| hypothetical protein MDG893_09095 [Marinobacter algicola DG893]
          Length = 229

 Score = 40.6 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 1/104 (0%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPE-SSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           S+G   LD  LG  G+P+G + E    E   G+  L L  + +  +   T  +++  H  
Sbjct: 29  STGYQVLDNQLGGAGWPRGALSECLLDEPGIGELHLLLPLMQRLSQAEKTVFWLNPPHIP 88

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
            +    + GV+L  +++   +     L   +  +RS    +++ 
Sbjct: 89  YAPALAREGVNLDQVILINTEDDGDFLWTLENCLRSPVTGLVMA 132


>gi|126460332|ref|YP_001056610.1| putative circadian clock protein, KaiC [Pyrobaculum calidifontis
           JCM 11548]
 gi|126250053|gb|ABO09144.1| putative circadian clock protein, KaiC [Pyrobaculum calidifontis
           JCM 11548]
          Length = 276

 Score = 40.6 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 76/262 (29%), Gaps = 25/262 (9%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ----SQKTGGTCAFVDAE 104
            +G   +D  L  GGF +G I  I G    GKT  +L  +        + G      +  
Sbjct: 20  PTGIWYVDQLL-QGGFRRGEIYLIAGEAGQGKTIFSLQFLKTGAELYDEPGLYITIDEPS 78

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
             +       LG DL  L                   +   V     D    +    E  
Sbjct: 79  EDVKRGVRESLGWDLDALESQNKLVFVDLRTHFRTYAKEEKVSADPRDIAKII---LEYV 135

Query: 165 GDMG-ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
              G + L       +          +      LVF  + ++K      + E  TG N +
Sbjct: 136 KKFGIKRLVIDPIAPLIITSHTDVLWVREYMRELVFQLR-KLKDVTTLMTSEIPTGENKI 194

Query: 224 KFYSSVRLDIRRVGSIK-DKDSITGNQTRVKVVKNKMASPFKQ----VEFDIMYGEGISF 278
             +     +    G IK +     G   RV  ++    +P +      E    YG     
Sbjct: 195 SRFGVE--EYLASGVIKLELMEYRGFVFRVMFIRKMRWTPVRPQKLVFEIYPHYG----- 247

Query: 279 FGELIDLGVKASIVDKSGAWFS 300
              +  L    + + +   W++
Sbjct: 248 ---IYVLDRLENFMKQVDMWYA 266


>gi|120553907|ref|YP_958258.1| hypothetical protein Maqu_0975 [Marinobacter aquaeolei VT8]
 gi|120323756|gb|ABM18071.1| SOS cell division inhibitor SulA [Marinobacter aquaeolei VT8]
          Length = 230

 Score = 40.6 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 1/103 (0%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPE-SSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           +G   LD  LG  G+PKG + E        G+  L L  + +  + G T  +++  H   
Sbjct: 30  TGYQVLDNQLGGLGWPKGALSECLLDSCGIGELHLVLPLMQKVARQGKTIFWLNPPHTPY 89

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           +    + GV+   L++ Q       L   +  +RS    +++ 
Sbjct: 90  APALARAGVNTDQLVLVQTHDSADFLWTLENCLRSPVTGLVMA 132


>gi|320095502|ref|ZP_08027170.1| DNA repair protein RadA [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319977564|gb|EFW09239.1| DNA repair protein RadA [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 457

 Score = 40.6 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 56/136 (41%), Gaps = 10/136 (7%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---GGTCAFVDAEH 105
            +G   LD  LG GG   G ++ + G    GK+TL L   A++ ++   GG   +   E 
Sbjct: 67  PTGVGELDRVLG-GGIVPGAVILLAGEPGVGKSTLLLDIAAKAARSLEGGGGVLYATGEE 125

Query: 106 ALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           +   +   A ++G   + LLI+        L      + +    ++V+DS+  ++     
Sbjct: 126 SASQVKGRAERIGAIDRRLLIADESD----LGALLGHIEAVDPALLVVDSIQTVSSSQVE 181

Query: 164 EGDMGESLPGMQARLM 179
            G  G +     A  +
Sbjct: 182 GGAGGVAQVRAVAASL 197


>gi|309790852|ref|ZP_07685396.1| DNA repair protein RadA [Oscillochloris trichoides DG6]
 gi|308227139|gb|EFO80823.1| DNA repair protein RadA [Oscillochloris trichoides DG6]
          Length = 453

 Score = 40.6 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YARK 114
             LG GG   G +V I G    GKTTL     AQ     G   +V AE +   I   A +
Sbjct: 79  RVLG-GGLVPGSVVLIGGDPGVGKTTLLSQVAAQFAADVGPALYVSAEESAQQIKLRAER 137

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
           LG+  ++L +   ++    L+   + +R     +++IDS+  +            S    
Sbjct: 138 LGMHAEDLYVFSENS----LDTILVQIRELRPKLVIIDSIQTVYLEELSSAAGSVSQVRE 193

Query: 175 QARLMSQALRKL 186
            A  +    ++L
Sbjct: 194 GALRLMHLAKEL 205


>gi|194379560|dbj|BAG63746.1| unnamed protein product [Homo sapiens]
          Length = 215

 Score = 40.6 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
             +     ++S+G   LD  L   G   G + EI G   SGKT + L   A    
Sbjct: 76  EELKTSTAILSTGIGSLDKLL-DAGLYTGEVTEIVGGPGSGKTQVCLCMAANVAH 129


>gi|55732683|emb|CAH93040.1| hypothetical protein [Pongo abelii]
          Length = 129

 Score = 40.6 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           ++S+G   LD  L   G   G + EI G   SGKT + L   A    
Sbjct: 81  ILSTGIGSLDKLL-DAGLYTGEVTEIVGGPGSGKTQVCLCVAANVAH 126


>gi|67517739|ref|XP_658655.1| hypothetical protein AN1051.2 [Aspergillus nidulans FGSC A4]
 gi|40747013|gb|EAA66169.1| hypothetical protein AN1051.2 [Aspergillus nidulans FGSC A4]
          Length = 892

 Score = 40.6 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 65/187 (34%), Gaps = 30/187 (16%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-----QSQKTGGTCAFV 101
            +S+    LD  L  GG   G + E+ G   SGKT   L  +        Q  G +  ++
Sbjct: 442 TISTLDAALDTLLN-GGIATGYVTEVTGESGSGKTQFLLGLLLAVQLPPPQGAGRSAIYI 500

Query: 102 DAEHALDSIYARKL--------------GVDLKNLLISQPDTGEQALEITDML----VRS 143
             E  L +    +L                 L  +L       E    I +      ++ 
Sbjct: 501 STEAPLATNRLSQLIECHPYLSTLSREQAPSLGRILSINAMDLESQDHILNYQLPVAIKR 560

Query: 144 GAVDIIVIDSVAALTPRAEIEGDM--GESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
             V ++VIDS+ +   RAE       G S    +   + Q LR L +S       +V  N
Sbjct: 561 YNVGLVVIDSITS-NYRAEHTSHDLSGLSTRSGELAKLGQMLRNLAAS---EDVAIVVAN 616

Query: 202 QMRMKIG 208
           Q+  +  
Sbjct: 617 QVSDRFE 623


>gi|302662146|ref|XP_003022731.1| hypothetical protein TRV_03113 [Trichophyton verrucosum HKI 0517]
 gi|291186693|gb|EFE42113.1| hypothetical protein TRV_03113 [Trichophyton verrucosum HKI 0517]
          Length = 258

 Score = 40.6 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 59/171 (34%), Gaps = 21/171 (12%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA-LHTIAQS 91
           M+LG Q    + +  +S+GS   D  L  GG+      EI       +            
Sbjct: 95  MELGHQ---RKRVVKISTGSKQFDTIL--GGYQPYFSYEIKKKPKKERKPETDGSLPKDM 149

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVD--------LKNLLISQPDTGEQALEITD---ML 140
               G  A++D E         ++           L+N+  ++    E  LE+ +     
Sbjct: 150 GGAEGKAAYIDTEGTFRPERIAQIAERFGVDPDSTLENISYARALNSEHQLELLNTLAKE 209

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
             SG   +++IDS+     R +  G         + + ++Q L KL     
Sbjct: 210 FASGEYRLLIIDSIMNCF-RVDYCGR---GELADRQQKLNQFLMKLAHMAE 256


>gi|292656359|ref|YP_003536256.1| KaiC-type circadian regulator Circ4 [Haloferax volcanii DS2]
 gi|291371723|gb|ADE03950.1| KaiC-type circadian regulator Circ4 [Haloferax volcanii DS2]
          Length = 234

 Score = 40.6 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + SG  G D  +  G  P+ R+  + GP  SGKTT     +A+  + G  C ++
Sbjct: 2   RIPSGVSGFDELIQGGFLPR-RLYALSGPPGSGKTTFTAQFMAEGLRNGEKCMYI 55


>gi|126668602|ref|ZP_01739555.1| hypothetical protein MELB17_15581 [Marinobacter sp. ELB17]
 gi|126626932|gb|EAZ97576.1| hypothetical protein MELB17_15581 [Marinobacter sp. ELB17]
          Length = 229

 Score = 40.6 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 1/104 (0%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEI-YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           S+G   LD  LG  G+P+G + E        G+  L L  + +   +  T  +++  H  
Sbjct: 29  STGYQALDNQLGGLGWPRGALSECLLDTPGIGELHLLLPLMQRLTHSEKTVFWLNPPHIP 88

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
            +    + GVDL  +++         L   +  +RS    +++ 
Sbjct: 89  YAPALVREGVDLDQVVVIHTQDSGDFLWTLENCLRSPVTGLVMA 132


>gi|170722374|ref|YP_001750062.1| putative circadian clock protein, KaiC [Pseudomonas putida W619]
 gi|169760377|gb|ACA73693.1| putative circadian clock protein, KaiC [Pseudomonas putida W619]
          Length = 481

 Score = 40.6 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
           V++G   LD  LG GG   G +  + GP   GKT+L L
Sbjct: 243 VTTGVTALDEMLG-GGLANGSVSLLMGPSGVGKTSLGL 279



 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           +G  GLD  L  GG   G    + GP  +GKT LA        + GG     
Sbjct: 10  TGIEGLDALL-KGGLVAGGSYIVQGPPGAGKTILANQLACGHVREGGRVLVA 60


>gi|283796494|ref|ZP_06345647.1| toprim domain protein [Clostridium sp. M62/1]
 gi|291075908|gb|EFE13272.1| toprim domain protein [Clostridium sp. M62/1]
          Length = 623

 Score = 40.6 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 75/232 (32%), Gaps = 15/232 (6%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKLGVDLKN 121
            P G++  I G    GKT  A+   A              E    +       LG  +K 
Sbjct: 326 IPFGKLTIIQGNPGEGKTYFAMRLAAACTNRKPLPGMETLEPFNIIYQTAEDGLGDTVKP 385

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD----MGESLPGMQAR 177
            L+      E+ L I D        D  +  ++     +  I       +G  +   +A 
Sbjct: 386 RLMEADADLEKVLVIDDRDTPLTLADERIARAIRENNAKLVIIDPVQAFLGADVDMNRAN 445

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
            +    R L      + C +V I  +    G          G  ++   ++VR  +  +G
Sbjct: 446 EVRPIFRSLGDIAQATGCAIVLIGHLNKAAGTQSTYR----GLGSIDITAAVRSLLF-IG 500

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
            +KD  +       +   K+ +A P + + F +   +G  + G       + 
Sbjct: 501 KLKDSPTT----RVLIHEKSSLAPPGQSLAFSLGDEKGFEWIGAYDITADEL 548


>gi|254168599|ref|ZP_04875442.1| KaiC domain protein [Aciduliprofundum boonei T469]
 gi|289597217|ref|YP_003483913.1| putative circadian clock protein, KaiC [Aciduliprofundum boonei
           T469]
 gi|197622433|gb|EDY35005.1| KaiC domain protein [Aciduliprofundum boonei T469]
 gi|289535004|gb|ADD09351.1| putative circadian clock protein, KaiC [Aciduliprofundum boonei
           T469]
          Length = 236

 Score = 40.6 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 5/89 (5%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS--QKTGGTCAFVD 102
           +E +++   GLD  +  GG PKG ++ I GP  S K++ + +        K  G   ++ 
Sbjct: 1   MEFINTYVKGLDERI-EGGIPKGSVILISGPTGSMKSSFSFYIAYNYLKDKKEGNVVYIS 59

Query: 103 AEHALDSI--YARKLGVDLKNLLISQPDT 129
            E + +S+      LG+D+  L  +    
Sbjct: 60  LEQSRESLINQMVNLGMDIDKLPKNCEFN 88


>gi|298206883|ref|YP_003715062.1| putative DNA repair protein [Croceibacter atlanticus HTCC2559]
 gi|83849517|gb|EAP87385.1| putative DNA repair protein [Croceibacter atlanticus HTCC2559]
          Length = 453

 Score = 40.6 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 66/196 (33%), Gaps = 20/196 (10%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           + +  L+  LG GG   G +  + G    GK+TL L    Q         +V  E +   
Sbjct: 75  TKNNELNRVLG-GGLVPGSLTLLGGEPGIGKSTLMLQIALQLPFK---TLYVSGEESAQQ 130

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           I  R     + N   +     E   +     V +   DI+VIDS+  L        D  E
Sbjct: 131 IKMRA--ERIDNSESNCFILTETKTQNIFKQVEAIEPDIVVIDSIQTLHS------DYIE 182

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFI-------NQMRMKIGVMFGSPETTTGGNA 222
           S  G  ++ + +   +L      +   ++ I       N    K+            G+ 
Sbjct: 183 SSAGSISQ-IRECTTELIKFAKETATPVILIGHITKDGNIAGPKVLEHMVDTVLQFEGDR 241

Query: 223 LKFYSSVRLDIRRVGS 238
              Y  +R    R GS
Sbjct: 242 NHIYRILRAQKNRFGS 257


>gi|329897215|ref|ZP_08271955.1| RecA/RadA recombinase [gamma proteobacterium IMCC3088]
 gi|328921370|gb|EGG28764.1| RecA/RadA recombinase [gamma proteobacterium IMCC3088]
          Length = 237

 Score = 40.6 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 1/118 (0%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGP-ESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           S+G   LD  L  GG+P G  +E+       G   + L  + +    G   AF++   A 
Sbjct: 34  STGYAPLDAVLTGGGWPLGNTIELLSDGHGLGAMGVFLPIMHRLSSRGQWQAFINPPCAP 93

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
            +       +  + +L+   D+ E  L   +  +       +           AE+  
Sbjct: 94  YAPLLEARDIPTEQVLLVHTDSKEDILWSIEQAITHNTCATVFAWLGHHRYSYAELRK 151


>gi|330444349|ref|YP_004377335.1| DNA repair protein RadA [Chlamydophila pecorum E58]
 gi|328807459|gb|AEB41632.1| DNA repair protein RadA [Chlamydophila pecorum E58]
          Length = 448

 Score = 40.6 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 81/228 (35%), Gaps = 28/228 (12%)

Query: 56  DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
           D  LG GG  +G I  + G    GK+T+ L T  +  K      +V  E ++     R  
Sbjct: 71  DRILG-GGAVRGSITLLGGDPGIGKSTILLQTAEKLAKQNLKILYVCGEESVAQTSLRAR 129

Query: 116 GVDL-KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174
            +++   L+   P+T    L+     +   + D+++IDS+  +            S PG 
Sbjct: 130 RLNITHPLIYLYPET---NLDHIKQQLSLLSPDVLIIDSIQIMF------DPKLNSAPGS 180

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRM-------KIGVMFGSPETTTGGNALKFYS 227
             + + +   +L     +S+     I  +         K+            GN+   Y 
Sbjct: 181 VIQ-VREVTAELMRIAKQSQITTFVIGHVTKSGDIAGPKVLEHLVDTVLYFEGNSHAHYR 239

Query: 228 SVRLDIRRVGSIK---------DKDSITGNQTRVKVVKNKMASPFKQV 266
            VR    R G            D      N +++ + +N + +P   V
Sbjct: 240 MVRSVKNRFGQTNELLILSMHSDGLKEVLNPSKLFLQENSITTPGSVV 287


>gi|259488647|tpe|CBF88254.1| TPA: DNA repair protein (Rad57), putative (AFU_orthologue;
           AFUA_1G12520) [Aspergillus nidulans FGSC A4]
          Length = 554

 Score = 40.6 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 65/187 (34%), Gaps = 30/187 (16%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-----QSQKTGGTCAFV 101
            +S+    LD  L  GG   G + E+ G   SGKT   L  +        Q  G +  ++
Sbjct: 104 TISTLDAALDTLLN-GGIATGYVTEVTGESGSGKTQFLLGLLLAVQLPPPQGAGRSAIYI 162

Query: 102 DAEHALDSIYARKL--------------GVDLKNLLISQPDTGEQALEITDML----VRS 143
             E  L +    +L                 L  +L       E    I +      ++ 
Sbjct: 163 STEAPLATNRLSQLIECHPYLSTLSREQAPSLGRILSINAMDLESQDHILNYQLPVAIKR 222

Query: 144 GAVDIIVIDSVAALTPRAEIEGDM--GESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
             V ++VIDS+ +   RAE       G S    +   + Q LR L +S       +V  N
Sbjct: 223 YNVGLVVIDSITS-NYRAEHTSHDLSGLSTRSGELAKLGQMLRNLAAS---EDVAIVVAN 278

Query: 202 QMRMKIG 208
           Q+  +  
Sbjct: 279 QVSDRFE 285


>gi|258573935|ref|XP_002541149.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237901415|gb|EEP75816.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 359

 Score = 40.6 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 62/191 (32%), Gaps = 8/191 (4%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIAL-GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           LG + S  +G +  S+G+  LD  L G  G   G  + I   E SG T  A   +     
Sbjct: 33  LGLRPSPVDGRQTTSTGTPTLDNLLAGHAGLALGSSLLI---EESGTTDFAGALLRYYAA 89

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
            G            D  +A  L   +     +      +  ++          +     +
Sbjct: 90  EGIVQEHQLHVVGFDPQWAATLPGLIGAAEAADEKPKGKNEKMKIAWRYERLGNFGAGIT 149

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
            + L P       +  S P      +S  ++KLT +IS S    +     R+ I  +   
Sbjct: 150 PSRLHPGLPSINFIQLSPPTQPGSPLSSVIQKLTQAISNSPSHKI----HRVIIPSLLSP 205

Query: 214 PETTTGGNALK 224
                G +  +
Sbjct: 206 ALYPPGTSRPE 216


>gi|34849608|gb|AAH58184.1| Rad51l1 protein [Mus musculus]
          Length = 248

 Score = 40.6 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 49/162 (30%), Gaps = 26/162 (16%)

Query: 69  IVEIYGPESSGKTTLALHTI------AQSQKTGGTCAFVDAEHALDSIYARKL------- 115
           + EI GP   GKT   +                G   ++D E A  +    ++       
Sbjct: 1   MTEITGPPGCGKTQFCIMMSVLATLPTSLGGLEGAVVYIDTESAFTAERLVEIAESRFPQ 60

Query: 116 -----------GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
                         +        +   Q LE  +  + S  V ++++DS+A++  +    
Sbjct: 61  YFNTEEKLLLTSSRVHLCRELTCEGLLQRLESLEEEIISKGVKLVIVDSIASVVRKEFDP 120

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
              G      + + + +    L          ++  NQ+   
Sbjct: 121 KLQGN--IKERNKFLGKGASLLKYLAGEFSIPVILTNQITTH 160


>gi|82617396|emb|CAI64307.1| conserved hypothetical protein [uncultured archaeon]
          Length = 253

 Score = 40.6 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V +G  GLD+ LG GG P G  + +     +G    A               ++ +EH +
Sbjct: 13  VPTGIAGLDVQLG-GGVPPGITILLLAEPGAGSEIFAQQFAYGGLVNSEEVFYLSSEHPI 71

Query: 108 DSIYARK 114
             I +  
Sbjct: 72  QEIASEM 78


>gi|259500937|ref|ZP_05743839.1| DNA repair protein RadA [Lactobacillus iners DSM 13335]
 gi|302190610|ref|ZP_07266864.1| DNA repair protein RadA [Lactobacillus iners AB-1]
 gi|259167631|gb|EEW52126.1| DNA repair protein RadA [Lactobacillus iners DSM 13335]
          Length = 459

 Score = 40.2 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 4/112 (3%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +++    L+  LG GG   G +V + G    GK+TL L  +     +     +V  E +
Sbjct: 74  RITTPFSELNRVLG-GGIVPGSLVLVGGDPGIGKSTLMLQIMGSIANS-HKVLYVSGEES 131

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
              I  R   + + +  +      E  +E     +     + +VIDS+  + 
Sbjct: 132 ASQIKMRAERLHISDTELL--LYSETNMENIREQIVDLKPEFLVIDSIQTMN 181


>gi|224001034|ref|XP_002290189.1| Rad51/RecA-like protein [Thalassiosira pseudonana CCMP1335]
 gi|220973611|gb|EED91941.1| Rad51/RecA-like protein [Thalassiosira pseudonana CCMP1335]
          Length = 430

 Score = 40.2 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 73/187 (39%), Gaps = 24/187 (12%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
            ++  LG GG   G I+ + G    GK+TL L  +A     GG   ++  E   + I +R
Sbjct: 69  EMNAVLG-GGIMPGSIILVGGDPGVGKSTLLLQ-MAGKTSGGGPVLYISGEENANQIASR 126

Query: 114 KLGV---DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170
            L +   D + LL  + D      +I    V+  A  ++VIDS+  +     +    G S
Sbjct: 127 ALRLGIHDPELLLWCETD-----ADIIADTVQKKAPSLVVIDSIQTM-----LCDAAGSS 176

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
             G   ++  +    L   +++S  + + +     K G +        G   ++      
Sbjct: 177 SVGGITQV--RECVGLFLRLAKSTGVPIILVGHVTKSGDV-------AGPRTVEHMVDCV 227

Query: 231 LDIRRVG 237
           L +   G
Sbjct: 228 LYLEGGG 234


>gi|156084354|ref|XP_001609660.1| hypothetical protein [Babesia bovis T2Bo]
 gi|154796912|gb|EDO06092.1| hypothetical protein BBOV_II001330 [Babesia bovis]
          Length = 274

 Score = 40.2 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 64/187 (34%), Gaps = 34/187 (18%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA------QSQKTGGTC 98
            E +S G   +D ALG      G + EIYG   SGKT +AL  +A      Q   +    
Sbjct: 10  TESISLGITEIDDALGDC-LLLGMLTEIYGESGSGKTQVALTLVAEELVRMQEADSNDVM 68

Query: 99  AFVDAEHALD----------------------SIYARKLGVDLKNLLISQPDTGEQALEI 136
            +     A                         +  R++   L+    S+P    + L  
Sbjct: 69  LYFQTSRAFPMQRFCDIIEHKRKSKNSRFKGAPLGPREIAKHLRIYRPSEPTLFLEELRN 128

Query: 137 TDMLV-RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
               V  S  + +IVIDS+A L      + D   +       + S     L     +   
Sbjct: 129 LHADVGASYHIRLIVIDSIACLFGDCMEDKDADNASMNTLLNVAS----ILKRLAHQKNA 184

Query: 196 ILVFINQ 202
           +++ IN+
Sbjct: 185 LILLINE 191


>gi|309809229|ref|ZP_07703099.1| DNA repair protein RadA [Lactobacillus iners SPIN 2503V10-D]
 gi|308170463|gb|EFO72486.1| DNA repair protein RadA [Lactobacillus iners SPIN 2503V10-D]
          Length = 459

 Score = 40.2 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 4/112 (3%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +++    L+  LG GG   G +V + G    GK+TL L  +     +     +V  E +
Sbjct: 74  RITTPFSELNRVLG-GGIVPGSLVLVGGDPGIGKSTLMLQIMGSIANS-HKVLYVSGEES 131

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
              I  R   + + +  +      E  +E     +     + +VIDS+  + 
Sbjct: 132 ASQIKMRAERLHISDTELL--LYSETNMENIREQIVDLKPEFLVIDSIQTMN 181


>gi|209527855|ref|ZP_03276345.1| DNA repair protein RadA [Arthrospira maxima CS-328]
 gi|209491712|gb|EDZ92077.1| DNA repair protein RadA [Arthrospira maxima CS-328]
          Length = 573

 Score = 40.2 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 30/105 (28%), Gaps = 1/105 (0%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
             + SG   LD  LG GG   G +V I G    GK+TL L                  E 
Sbjct: 86  SRIPSGYGELDRVLG-GGIVPGSLVLIGGEPGIGKSTLLLQVANSLSHHARVLYVSAEES 144

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
                   +   +  ++     D         D  V +      V
Sbjct: 145 GQQVKLRSQRLWNAPSVASVADDDAHDLQTDNDAQVNNHHSSDAV 189


>gi|294495000|ref|YP_003541493.1| circadian clock protein, KaiC [Methanohalophilus mahii DSM 5219]
 gi|292665999|gb|ADE35848.1| putative circadian clock protein, KaiC [Methanohalophilus mahii DSM
           5219]
          Length = 242

 Score = 40.2 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 2/76 (2%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GTCAFVDAE 104
           E VS+G  GLD  L  GG+ KG    + G   +GKT      I +  K G      + +E
Sbjct: 8   ERVSTGISGLDEML-KGGYFKGTANVVSGKSGTGKTIFGSQFIYEGAKNGEKVMCIITSE 66

Query: 105 HALDSIYARKLGVDLK 120
            +   +   K   D  
Sbjct: 67  ESKSIVREMKASFDWD 82


>gi|146282689|ref|YP_001172842.1| cell division inhibitor SulA, putative [Pseudomonas stutzeri A1501]
 gi|145570894|gb|ABP80000.1| cell division inhibitor SulA, putative [Pseudomonas stutzeri A1501]
          Length = 225

 Score = 40.2 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 2/113 (1%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI-YGPESSGKTTLALHTIAQSQKTGGT 97
            S+        +G   LD  L  GG+P   + EI +     G+  L   T+A+    G  
Sbjct: 40  QSVASPTAAQPTGHAMLDALLPAGGWPDSALSEILFAAPGIGELRLLWPTLARLTSAGER 99

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
              V   H          GVDL++L+I Q    + AL   +  +RSG+   ++
Sbjct: 100 VVLVAPPHRPCPQAWLAAGVDLRHLVIVQAKDRD-ALWSAEQCLRSGSCAAVL 151


>gi|157865568|ref|XP_001681491.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68124788|emb|CAJ02433.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 521

 Score = 40.2 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 57/187 (30%), Gaps = 20/187 (10%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS------QKTGGTCAF 100
           V+ +G   LD AL +G   +G + E+ G   +GKTTLA               T   C +
Sbjct: 147 VIPTGLRSLDSAL-LGVLRRGWVTELTGLPGTGKTTLAAAWCRSCLRHARLCGTAHDCVW 205

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID-------S 153
           + +  A+ S        +     +           ++++      +D            S
Sbjct: 206 LQSGSAVHSAVLTTAHEEADATELPSLADAVHVACLSNLDGLQQLLDRWHGTEGSASPLS 265

Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQA------LRKLTSSISRSKCILVFINQMRMKI 207
              L     I   M  S        + +       L+ L       +  ++ I Q +   
Sbjct: 266 TVGLIVLDSITDLMRRSFRCEDDDALQRHEALATTLQSLKRLAEEQRLAVLVITQQQRHP 325

Query: 208 GVMFGSP 214
              FG  
Sbjct: 326 WPAFGRS 332


>gi|327313541|ref|YP_004328978.1| DNA repair protein RadA [Prevotella denticola F0289]
 gi|326946371|gb|AEA22256.1| DNA repair protein RadA [Prevotella denticola F0289]
          Length = 466

 Score = 40.2 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 56/150 (37%), Gaps = 12/150 (8%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
            L+  LG GG   G IV + G    GK+TL L TI    +      +V  E +   I  R
Sbjct: 90  ELNRVLG-GGLVPGSIVLLGGEPGIGKSTLTLQTILHMTQ---HVLYVSGEESPHQIKMR 145

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
            + +  K++  +     E +LE     +R    +++VIDS+  ++           +   
Sbjct: 146 AVRI-TKDIAENVIILSETSLERIFEHIRDVQPELVVIDSIQTISTEDVDSSPGSITQVR 204

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQM 203
             A         L      S   ++ I  +
Sbjct: 205 ECASA-------LLRFAKTSGVPVILIGHI 227


>gi|304310909|ref|YP_003810507.1| hypothetical protein HDN1F_12710 [gamma proteobacterium HdN1]
 gi|301796642|emb|CBL44854.1| Conserved hypothetical protein [gamma proteobacterium HdN1]
          Length = 223

 Score = 40.2 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 1/105 (0%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVE-IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
            + SG   LD  L  GG+PK  IVE +      G+ +L    + Q  +     A++    
Sbjct: 33  CIPSGYDRLDRELPDGGWPKQGIVELLLPRWGLGEMSLFTPALTQLGQQNRWLAWIAPPW 92

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
              +    + G+  ++LL+ +       L   +  ++SGA  I+ 
Sbjct: 93  IPYAPALERAGIPTQHLLLVRTHNLADTLWAMEQCLKSGACAIVF 137


>gi|284162359|ref|YP_003400982.1| circadian clock protein, KaiC [Archaeoglobus profundus DSM 5631]
 gi|284012356|gb|ADB58309.1| putative circadian clock protein, KaiC [Archaeoglobus profundus DSM
           5631]
          Length = 253

 Score = 40.2 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 30/85 (35%), Gaps = 4/85 (4%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGGTCAFV 101
           +E   SG  G D  L  GGF + R   + G   SGKT  AL  +          G     
Sbjct: 9   LERCPSGIPGFDE-LCEGGFIRDRTYLVSGVSGSGKTIFALQFLVNGAKEYNEPGIFIAT 67

Query: 102 DAEHALDSIYARKLGVDLKNLLISQ 126
           +        YA   G +L+ L    
Sbjct: 68  EERPQSIREYASTFGWELEKLEDEN 92


>gi|149926830|ref|ZP_01915089.1| replicative DNA helicase [Limnobacter sp. MED105]
 gi|149824382|gb|EDM83600.1| replicative DNA helicase [Limnobacter sp. MED105]
          Length = 461

 Score = 40.2 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 84/280 (30%), Gaps = 45/280 (16%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC- 98
                I  +S+G + LD      G   G ++ + G  S GKT  +L+         G   
Sbjct: 190 DSTSDITGISTGFVDLD--GKTSGLQPGDLIIVAGRPSMGKTAFSLNIGEHVAVEEGHAV 247

Query: 99  AFVDAEHALDSIYARKLGV--DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
           A    E     +  R LG    L    +      ++        V       + ID   A
Sbjct: 248 AVFSMEMGATQLAMRLLGSVGRLDQHRLRTGRLTDEDWPRLTYAVEKMQNAQLFIDETPA 307

Query: 157 LTPRA--------------------EIEGDMGESLPGMQ-ARLMSQALRKLTSSISRSKC 195
           L+                       +    MG S PG   A  +S+  R L        C
Sbjct: 308 LSSMEVRARCRRLARQCGQLGLVIIDYLQLMGSSSPGENRATEISEISRSLKGLAKELNC 367

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255
            ++ ++Q+   +          +             D+R  G+I+    +      + + 
Sbjct: 368 PVIALSQLNRSLEQRPNKRPVMS-------------DLRESGAIEQDADVI-----LFIY 409

Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVK-ASIVDK 294
           ++++ +P    +       G    G +  + V    +  K
Sbjct: 410 RDEVYNPDSPDKGTAEIIIGKQRNGPIGTVRVTFLGMYTK 449


>gi|327400086|ref|YP_004340925.1| putative circadian clock protein KaiC [Archaeoglobus veneficus
           SNP6]
 gi|327315594|gb|AEA46210.1| putative circadian clock protein, KaiC [Archaeoglobus veneficus
           SNP6]
          Length = 283

 Score = 40.2 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 1/78 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            V +G  GLD  LG  G+       + G   +GKT  AL  I +  + G    FV  +  
Sbjct: 6   RVETGIYGLDELLGS-GYRSNTANIVLGSTGTGKTIFALQFILKGLERGEKGIFVSFDMD 64

Query: 107 LDSIYARKLGVDLKNLLI 124
           +  +      +   ++  
Sbjct: 65  VKDVVDTADAMGWDDIED 82


>gi|315653981|ref|ZP_07906897.1| DNA repair protein RadA [Lactobacillus iners ATCC 55195]
 gi|315488677|gb|EFU78323.1| DNA repair protein RadA [Lactobacillus iners ATCC 55195]
          Length = 459

 Score = 40.2 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 4/112 (3%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +++    L+  LG GG   G +V + G    GK+TL L  +     +     +V  E +
Sbjct: 74  RITTPFSELNRVLG-GGIVPGSLVLVGGDPGIGKSTLMLQIMGSIANS-HKVLYVSGEES 131

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
              I  R   + + +  +      E  +E     +     + +VIDS+  + 
Sbjct: 132 ASQIKMRAERLHISDTELL--LYSETNMENIREQIVDLKPEFLVIDSIQTMN 181


>gi|309806519|ref|ZP_07700523.1| DNA repair protein RadA [Lactobacillus iners LactinV 03V1-b]
 gi|312871559|ref|ZP_07731652.1| DNA repair protein RadA [Lactobacillus iners LEAF 3008A-a]
 gi|312872605|ref|ZP_07732673.1| DNA repair protein RadA [Lactobacillus iners LEAF 2062A-h1]
 gi|308167118|gb|EFO69293.1| DNA repair protein RadA [Lactobacillus iners LactinV 03V1-b]
 gi|311091967|gb|EFQ50343.1| DNA repair protein RadA [Lactobacillus iners LEAF 2062A-h1]
 gi|311092954|gb|EFQ51305.1| DNA repair protein RadA [Lactobacillus iners LEAF 3008A-a]
          Length = 459

 Score = 40.2 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 4/112 (3%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +++    L+  LG GG   G +V + G    GK+TL L  +     +     +V  E +
Sbjct: 74  RITTPFSELNRVLG-GGIVPGSLVLVGGDPGIGKSTLMLQIMGSIANS-HKVLYVSGEES 131

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
              I  R   + + +  +      E  +E     +     + +VIDS+  + 
Sbjct: 132 ASQIKMRAERLHISDTELL--LYSETNMENIREQIVDLKPEFLVIDSIQTMN 181


>gi|327400793|ref|YP_004341632.1| putative circadian clock protein KaiC [Archaeoglobus veneficus
           SNP6]
 gi|327316301|gb|AEA46917.1| putative circadian clock protein, KaiC [Archaeoglobus veneficus
           SNP6]
          Length = 246

 Score = 40.2 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 28/85 (32%), Gaps = 4/85 (4%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E V +G  G D  L  GG  + R   + G   SGKT  A+  I    +         A 
Sbjct: 3   LERVPTGIPGFDE-LCEGGLLRDRTYLVSGTSGSGKTIFAMQYIVNGIQMFNEPGIFVAT 61

Query: 105 HALDSIYARK---LGVDLKNLLISQ 126
                         G DL+ L    
Sbjct: 62  EERPQHLREHFSVFGWDLEKLEDEN 86


>gi|308049975|ref|YP_003913541.1| hypothetical protein Fbal_2264 [Ferrimonas balearica DSM 9799]
 gi|307632165|gb|ADN76467.1| conserved hypothetical protein [Ferrimonas balearica DSM 9799]
          Length = 222

 Score = 40.2 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 2/106 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + +G   LD  L +GG+P+  +VE+   + +    L    +            V    
Sbjct: 25  ESLPTGFSSLDQQLALGGWPRYGVVELLADDPALSPLLV--PLLADSDADRWLLCVAPPV 82

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
            L +   +++GVDL  L+       ++ L   +  + SG   +++ 
Sbjct: 83  PLYAPGWQQIGVDLSRLVCVDARDSQEQLWTLEQALGSGRCALVLA 128


>gi|323692823|ref|ZP_08107050.1| TnpY protein [Clostridium symbiosum WAL-14673]
 gi|323503137|gb|EGB18972.1| TnpY protein [Clostridium symbiosum WAL-14673]
          Length = 582

 Score = 40.2 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 75/232 (32%), Gaps = 15/232 (6%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKLGVDLKN 121
            P G++  I G    GKT  A+   A              E    +       LG  +K 
Sbjct: 285 IPFGKLTIIQGNPGEGKTYFAMRLAAACTNRKPLPGMETLEPFNIIYQTAEDGLGDTVKP 344

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD----MGESLPGMQAR 177
            L+      E+ L I D        D  +  ++     R  I       +G  +   +A 
Sbjct: 345 RLMEANADLERVLVIDDRDTPLTLADERIARAIRENNARLVIIDPVQAFLGADVDMNRAN 404

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
            +    R L      + C +V I  +    G          G  ++   ++VR  +  +G
Sbjct: 405 EVRPIFRSLGDIAQATGCAIVLIGHLNKATGTQSTYR----GLGSIDITAAVRSLLF-IG 459

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
            +KD  +       +   K+ +A P + + F +   +G  + G       + 
Sbjct: 460 KLKDSPTT----RVLIHEKSSLAPPGQSLAFSLGDEKGFEWIGAYDITADEL 507


>gi|323484977|ref|ZP_08090331.1| TnpY protein [Clostridium symbiosum WAL-14163]
 gi|323401719|gb|EGA94063.1| TnpY protein [Clostridium symbiosum WAL-14163]
          Length = 623

 Score = 40.2 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 75/232 (32%), Gaps = 15/232 (6%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKLGVDLKN 121
            P G++  I G    GKT  A+   A              E    +       LG  +K 
Sbjct: 326 IPFGKLTIIQGNPGEGKTYFAMRLAAACTNRKPLPGMETLEPFNIIYQTAEDGLGDTVKP 385

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD----MGESLPGMQAR 177
            L+      E+ L I D        D  +  ++     R  I       +G  +   +A 
Sbjct: 386 RLMEANADLERVLVIDDRDTPLTLADERIARAIRENNARLVIIDPVQAFLGADVDMNRAN 445

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
            +    R L      + C +V I  +    G          G  ++   ++VR  +  +G
Sbjct: 446 EVRPIFRSLGDIAQATGCAIVLIGHLNKATGTQSTYR----GLGSIDITAAVRSLLF-IG 500

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
            +KD  +       +   K+ +A P + + F +   +G  + G       + 
Sbjct: 501 KLKDSPTT----RVLIHEKSSLAPPGQSLAFSLGDEKGFEWIGAYDITADEL 548


>gi|114777608|ref|ZP_01452589.1| DNA Repair Protein [Mariprofundus ferrooxydans PV-1]
 gi|114552079|gb|EAU54596.1| DNA Repair Protein [Mariprofundus ferrooxydans PV-1]
          Length = 462

 Score = 40.2 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 22/181 (12%)

Query: 12  KSKALEA-ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           K KAL   A+++I                   E     S+    LD  LG GG   G  V
Sbjct: 46  KGKALATSAITEI-----------------SSENSPRRSTCIEELDRVLG-GGLVPGSAV 87

Query: 71  EIYGPESSGKTT-LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129
            I G    GK+T L       ++ +GG   ++  E ++  +  R  G  +  +  S    
Sbjct: 88  LIGGDPGIGKSTLLLQAAAKLAENSGGAVLYITGEESMQQVNLR--GQRIGAMHASLQLA 145

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
               LE     +       ++IDS+               S     +  + Q  + +  +
Sbjct: 146 SACELESMLATIDKTRPSTVIIDSIQTTVSNRLTSAPGTVSQVRDCSAALIQQAKAVGHA 205

Query: 190 I 190
           +
Sbjct: 206 L 206


>gi|323349353|gb|EGA83578.1| Rad55p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 355

 Score = 40.2 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 33 MQLG--SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
          M LG      I E  + +SSG  GLD  L + GF    I EI+GP   GKT   +  +  
Sbjct: 1  MSLGIPLSQLIVESPKPLSSGITGLDEILNL-GFQARSIYEIFGPPGIGKTNFGIQLVCN 59


>gi|295103424|emb|CBL00968.1| RecA-family ATPase [Faecalibacterium prausnitzii SL3/3]
          Length = 621

 Score = 40.2 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 80/232 (34%), Gaps = 15/232 (6%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKLGVDLKN 121
            P G++  + G    GKT  A+H  A              E    +       LG  +K 
Sbjct: 325 LPFGKLSVLQGNPGEGKTYFAMHLAAACTNGKLLPNMERMEPFNVIYQTAEDGLGDTVKP 384

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM----GESLPGMQAR 177
            LI      ++ L I D  V+    D  +  ++     R  I   +    G  +   +A 
Sbjct: 385 RLIEAGADLDRVLVIDDSDVQLTLSDERIEKAIVENNARLVIIDPIQAYLGSDVDMNRAN 444

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
            +     +L     R+ C ++ I  +    G+         G  ++   ++VR  +  +G
Sbjct: 445 EVRPIFMRLGQVAQRTGCAILLIGHLNKAAGMQSLQR----GLGSIDIAAAVRSVMF-IG 499

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
            +K   ++      +   K+ +A P   + F +    G  +FGE      + 
Sbjct: 500 KLKHDPTM----RILTHEKSSLAPPGVSLAFSLGDEGGFRWFGEYDITADEM 547


>gi|282859580|ref|ZP_06268684.1| DNA repair protein RadA [Prevotella bivia JCVIHMP010]
 gi|282587631|gb|EFB92832.1| DNA repair protein RadA [Prevotella bivia JCVIHMP010]
          Length = 465

 Score = 40.2 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 46/150 (30%), Gaps = 12/150 (8%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
            L+  LG GG   G I+ + G    GK+TL L TI              +          
Sbjct: 89  ELNRVLG-GGMVPGSIILLGGEPGIGKSTLTLQTILHLN----LSVLYVSGEESPHQIKM 143

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
           +     K++  +     E +LE      +     ++VIDS+  +            +   
Sbjct: 144 RAERITKDIPENVVILSETSLEHIFEHAKDVKPQLLVIDSIQTIATEDVDSSPGSVTQVR 203

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQM 203
             A         L      S   ++ I  +
Sbjct: 204 ECASA-------LLRFAKTSGIPVILIGHI 226


>gi|34098382|sp|O58022|Y284_PYRHO RecName: Full=UPF0273 protein PH0284
 gi|122919958|pdb|2DR3|A Chain A, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
           Pyrococcus Horikoshii Ot3
 gi|122919959|pdb|2DR3|B Chain B, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
           Pyrococcus Horikoshii Ot3
 gi|122919960|pdb|2DR3|C Chain C, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
           Pyrococcus Horikoshii Ot3
 gi|122919961|pdb|2DR3|D Chain D, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
           Pyrococcus Horikoshii Ot3
 gi|122919962|pdb|2DR3|E Chain E, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
           Pyrococcus Horikoshii Ot3
 gi|122919963|pdb|2DR3|F Chain F, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
           Pyrococcus Horikoshii Ot3
          Length = 247

 Score = 40.2 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 79/240 (32%), Gaps = 33/240 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH- 105
            V +G  G+D  L  GG P+  +V + G   +GKT  +   +    K G    +V  E  
Sbjct: 4   RVKTGIPGVDEIL-HGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH 62

Query: 106 -------------ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
                         +     + +   +         + E    I   L        ++  
Sbjct: 63  PVQVRQNMAQFGWDVKPYEEKGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQ 122

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           ++  +  +  +   +        A   S  + +L   ++ + C  +F++Q+ +       
Sbjct: 123 AIRDINAKRVVVDSVTTLYINKPAMARS-IILQLKRVLAGTGCTSIFVSQVSV------- 174

Query: 213 SPETTTGGNALKFYS--SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
             E   GG  ++      +RLD+       D+      ++ +       +   ++  FDI
Sbjct: 175 -GERGFGGPGVEHGVDGIIRLDL-------DEIDGELKRSLIVWKMRGTSHSMRRHPFDI 226


>gi|14590208|ref|NP_142273.1| hypothetical protein PH0284 [Pyrococcus horikoshii OT3]
 gi|3256673|dbj|BAA29356.1| 252aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 252

 Score = 40.2 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 79/240 (32%), Gaps = 33/240 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH- 105
            V +G  G+D  L  GG P+  +V + G   +GKT  +   +    K G    +V  E  
Sbjct: 9   RVKTGIPGVDEIL-HGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH 67

Query: 106 -------------ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
                         +     + +   +         + E    I   L        ++  
Sbjct: 68  PVQVRQNMAQFGWDVKPYEEKGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQ 127

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           ++  +  +  +   +        A   S  + +L   ++ + C  +F++Q+ +       
Sbjct: 128 AIRDINAKRVVVDSVTTLYINKPAMARS-IILQLKRVLAGTGCTSIFVSQVSV------- 179

Query: 213 SPETTTGGNALKFYS--SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
             E   GG  ++      +RLD+       D+      ++ +       +   ++  FDI
Sbjct: 180 -GERGFGGPGVEHGVDGIIRLDL-------DEIDGELKRSLIVWKMRGTSHSMRRHPFDI 231


>gi|323705631|ref|ZP_08117205.1| DNA repair protein RadA [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535108|gb|EGB24885.1| DNA repair protein RadA [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 448

 Score = 40.2 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 80/236 (33%), Gaps = 17/236 (7%)

Query: 35  LGSQGSIFEGIEV-----VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           L S+  + + IE      + +G    D  LG GG  KG +V I G    GK+T+ L  I+
Sbjct: 50  LTSKVELLKDIEAKDEDRIKTGIGEFDRVLG-GGVVKGSLVLIGGEPGIGKSTMLLQ-IS 107

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
                     ++  E +   I  R   +      +      E  +   +  V   +   I
Sbjct: 108 DVMSNFTKVLYISGEESSSQIKMRADRIIKGKQEVY--FLAETNINNVERHVEKISPGFI 165

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           ++DS+  +            S      + + +        +S+   I VFI     K G 
Sbjct: 166 IVDSIQTMYADESTTIPGSVSQVRQVTQHLLR--------LSKQNGITVFIIGHVTKEGS 217

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           + G        + + ++   R    R+         + N+  V  ++++     K 
Sbjct: 218 IAGPRVLEHMVDTVLYFEGDRTQSFRILRAYKNRFGSTNEIGVFEMESEGLKEVKN 273


>gi|270296532|ref|ZP_06202732.1| replicative DNA helicase [Bacteroides sp. D20]
 gi|270273936|gb|EFA19798.1| replicative DNA helicase [Bacteroides sp. D20]
          Length = 459

 Score = 40.2 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
            GI  + +G   LD      G+ +G +  +    S GKT  ALH    +   G       
Sbjct: 180 NGITGIPTGFDALDHV--TAGWQRGDLNILAARPSVGKTAFALHLARAAAMAGRHVVVFS 237

Query: 103 AE 104
            E
Sbjct: 238 LE 239


>gi|160891770|ref|ZP_02072773.1| hypothetical protein BACUNI_04227 [Bacteroides uniformis ATCC 8492]
 gi|156858248|gb|EDO51679.1| hypothetical protein BACUNI_04227 [Bacteroides uniformis ATCC 8492]
          Length = 461

 Score = 40.2 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
            GI  + +G   LD      G+ +G +  +    S GKT  ALH    +   G       
Sbjct: 182 NGITGIPTGFDALDHV--TAGWQRGDLNILAARPSVGKTAFALHLARAAAMAGRHVVVFS 239

Query: 103 AE 104
            E
Sbjct: 240 LE 241


>gi|319941856|ref|ZP_08016177.1| hypothetical protein HMPREF9464_01396 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804509|gb|EFW01379.1| hypothetical protein HMPREF9464_01396 [Sutterella wadsworthensis
           3_1_45B]
          Length = 237

 Score = 40.2 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 9/119 (7%)

Query: 37  SQGSIFEGIEVV-SSGSLGLDIALGIGGFPKGRIVE-IYGPESSGKTTLALHTIAQSQKT 94
           ++ +  E +EV+ S+ +  +D  LG GGFP    VE +   E  G+ +L +H +   ++ 
Sbjct: 14  TRAASMEPLEVLLSTHNPQVDKLLG-GGFPCKGFVELLTTGERRGEISLLIHALTHVKR- 71

Query: 95  GGTCAFVDAEHALDS--IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
                ++                G+DL   L   P + E+A    +  V SG  D +V 
Sbjct: 72  ---VVWILPPQGFTPYAPAFEAAGIDLSRQLFVVPASPEEAFRCAEAAVTSGEADAVVA 127


>gi|299115518|emb|CBN75722.1| expressed unknown protein [Ectocarpus siliculosus]
          Length = 330

 Score = 40.2 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 77/191 (40%), Gaps = 27/191 (14%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS------Q 92
                 ++ +S G   LD A   GG     + EI G   +GKT L L  + Q+       
Sbjct: 67  SKDAARLDRLSFGCPSLDAAF-EGGVRVQGVTEIAGEAGAGKTQLCLQLLLQAQLAPEAG 125

Query: 93  KTGGTCAFVD-AEHALDSIYARKLGVDLKNLLISQPDTGEQ----------------ALE 135
             GG    +   E    S   R++    ++    +P+   +                 +E
Sbjct: 126 GLGGKSYVLTCGEGDFPSRRLRQMASTYQSRHGVKPEKLMEGVCIQNAKTLDDQMMIIME 185

Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195
               ++RS  V ++VIDS+AAL  R+++    G+   G ++RL+ +  +++     R   
Sbjct: 186 HLPHIMRSQNVKLVVIDSIAALF-RSDMGRGRGD--IGERSRLLGRLSQQMKRLGDRHGA 242

Query: 196 ILVFINQMRMK 206
             V +NQ+  +
Sbjct: 243 AFVVVNQVTAR 253


>gi|166711027|ref|ZP_02242234.1| hypothetical protein Xoryp_06045 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 216

 Score = 40.2 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 4/121 (3%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE-SSGKTTLALHTIA 89
            + + G   +   G E  S+G   LD  L  GG+P+  + E+  P    G+  L L T+A
Sbjct: 27  TVWRAGQGTATVNGGE--STGHAALDALLPDGGWPRRALTELLLPAHGIGEIALLLPTLA 84

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           +    G     V       +   +  GV L++L + Q +    AL   +  +RSGA   +
Sbjct: 85  RMTARGSRVVLVAPPFIPYAPAWQAGGVVLEHLEVVQAEPRA-ALWAFEQCLRSGACAAV 143

Query: 150 V 150
           +
Sbjct: 144 L 144


>gi|9886992|gb|AAG01690.1|AF222605_1 KaiC [Cylindrospermum stagnale PCC 7417]
          Length = 269

 Score = 40.2 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 51/150 (34%), Gaps = 24/150 (16%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT----IAQSQK 93
             +   G+E + +   G D  +  GG P GR   + G   +GKT L+L      I    +
Sbjct: 10  NKTPIGGVEKIRTMIEGFDD-ISHGGLPIGRTTLVSGTSGTGKTLLSLQFLYNGITCFDE 68

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLIS------QPDTGEQALEI----------- 136
            G    F ++   +    A   G +L  L+              +  +I           
Sbjct: 69  AGVFVTFEESPSDIIKN-ANIFGWNLHRLIEEGKLFILDASPDPEGQDIVGNFDLSALIE 127

Query: 137 -TDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
                +R      + IDS+ A+  + E  G
Sbjct: 128 RLQYAIRKYKAKRVSIDSITAVFQQYEAMG 157


>gi|121583264|ref|YP_973700.1| hypothetical protein Pnap_4894 [Polaromonas naphthalenivorans CJ2]
 gi|120596522|gb|ABM39958.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2]
          Length = 273

 Score = 40.2 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 1/106 (0%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVE-IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           VV +G   LD  L  GG+P   + E +    S  +  L   ++    + GG    V    
Sbjct: 49  VVPTGFASLDAELPGGGWPCQSLTELLQPQPSLCEWRLLAPSLKALVRDGGHILLVGPPK 108

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
                   +LG+  ++L+    DT  + L  T+ L+++     I+ 
Sbjct: 109 RPHVPGLVQLGLPAQSLIWFAADTPSERLWTTEQLIQANPRGAILA 154


>gi|18873750|gb|AAL16347.1| KaiC [Nostoc linckia]
          Length = 209

 Score = 40.2 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 49/149 (32%), Gaps = 22/149 (14%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KT 94
           +  +  G+E + +   G D  +G GG P  R   I G   +GKT L+L  +         
Sbjct: 11  KPPLIGGVEKIRTMIEGFDD-IGHGGLPISRTTLISGTSGTGKTLLSLQFLYNGITYFDE 69

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLIS------QPDTGEQALEI------------ 136
            G     +   +     A   G +L  L+              +  +I            
Sbjct: 70  SGVFVTFEESPSDIIKNAHIFGWNLPRLIEEGKLFILDASPDPEGQDIVGNFDLSALIER 129

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
               +R      + IDS+ A+  + E  G
Sbjct: 130 LQYAIRKYKAKRVSIDSITAVFQQYEAMG 158


>gi|15643138|ref|NP_228181.1| hypothetical protein TM0370 [Thermotoga maritima MSB8]
 gi|4980874|gb|AAD35457.1|AE001717_3 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 253

 Score = 40.2 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 3/80 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+ V +G  G+D  L  GG P+  IV I G   +GKT  +   I    + G    +V  E
Sbjct: 13  IKRVKTGIPGMDEIL-HGGIPERNIVLISGGPGTGKTIFSQQFIWNGLQMGEPGIYVALE 71

Query: 105 --HALDSIYARKLGVDLKNL 122
                        G ++   
Sbjct: 72  EHPVQVKKNMEVFGWNVDPF 91


>gi|296242649|ref|YP_003650136.1| putative circadian clock protein KaiC [Thermosphaera aggregans DSM
           11486]
 gi|296095233|gb|ADG91184.1| putative circadian clock protein, KaiC [Thermosphaera aggregans DSM
           11486]
          Length = 478

 Score = 40.2 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 56/152 (36%), Gaps = 16/152 (10%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           ++GS  LD  +G        ++ I G   SGKT+LA      + + G  C +V       
Sbjct: 9   TTGSPELDDLIGP--ILPNSMLLIAGHPGSGKTSLASQICYANTRLGKKCLYVTFYEDKG 66

Query: 109 SIY--ARKLGVDLK--------NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
            +Y    K+GVD +          +     + E  L+    LV     D++V+DSV    
Sbjct: 67  KLYKNMSKIGVDFQSAEEKGFFKFVKLPVVSIESFLKEFASLVEREDFDVVVLDSV---N 123

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
           P  E+     E    +      Q    +   +
Sbjct: 124 PVLELTEKREE-HRAILLNFFYQLTSSIIGLL 154


>gi|206895715|ref|YP_002247204.1| DNA repair protein [Coprothermobacter proteolyticus DSM 5265]
 gi|206738332|gb|ACI17410.1| DNA repair protein [Coprothermobacter proteolyticus DSM 5265]
          Length = 407

 Score = 40.2 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 76/229 (33%), Gaps = 36/229 (15%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           +  +   +    L+  LG GG   G ++ + G    GK+TLAL  +           +V 
Sbjct: 52  KPQKTTPTFLPELNFVLG-GGLKSGSVLLLGGEPGIGKSTLALQIL---GNADTDAVYVS 107

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           +E   + +  R   + L+N+ +          E     V      +I +DS+  +     
Sbjct: 108 SEETREQVLERAERIGLRNINVVS--------ESDLGAVDLDNYGLICVDSLQTI----- 154

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
                G+        ++ +    L      S  I + +  +               G   
Sbjct: 155 ---RFGDMGAPGSPAMVKEIAGYLVKWAKESNGIALIVAHVT--------KEGVIAGPRT 203

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271
           ++    V L +        +   T ++  +K+VKN+      Q+  ++ 
Sbjct: 204 VEHMVDVVLYL--------EGDRTSDKRLLKLVKNRFGPSTDQILLEMQ 244


>gi|317480256|ref|ZP_07939362.1| replicative DNA helicase [Bacteroides sp. 4_1_36]
 gi|316903577|gb|EFV25425.1| replicative DNA helicase [Bacteroides sp. 4_1_36]
          Length = 461

 Score = 40.2 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
            GI  + +G   LD      G+ +G +  +    S GKT  ALH    +   G       
Sbjct: 182 NGITGIPTGFDALDQV--TAGWQRGDLNILAARPSVGKTAFALHLARAAAMAGRHVVVFS 239

Query: 103 AE 104
            E
Sbjct: 240 LE 241


>gi|302658072|ref|XP_003020745.1| DNA repair protein (Rad57), putative [Trichophyton verrucosum HKI
           0517]
 gi|291184605|gb|EFE40127.1| DNA repair protein (Rad57), putative [Trichophyton verrucosum HKI
           0517]
          Length = 600

 Score = 40.2 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 6/95 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-----GTCAFVD 102
           +S+    LD AL  GG   G + E+ G   +GKT   LH +   Q            ++ 
Sbjct: 120 ISTLDPILDSALS-GGISTGYLTEVTGESGAGKTQFLLHLLLSVQLPAPHGLSKNALYIS 178

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
            E  L +    +L  + + L    P+T   +L+  
Sbjct: 179 TESDLATNRLSQLINEHQTLQALHPETPRPSLDNI 213


>gi|240278866|gb|EER42372.1| RecA family ATPase Rhp57 [Ajellomyces capsulatus H143]
 gi|325090124|gb|EGC43434.1| RecA family ATPase Rhp57 [Ajellomyces capsulatus H88]
          Length = 701

 Score = 40.2 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 72/203 (35%), Gaps = 30/203 (14%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           I++LG +      +  VS+    LD  L  GG   G + E+ G    GKT   LH +   
Sbjct: 160 IVKLGHR---VPELSFVSTLDPVLDRVLA-GGISTGYVTELAGESGCGKTQFLLHLLLSV 215

Query: 92  QKTGG-----TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI---------- 136
           Q            ++  E  L +    +L  +   +      +   +LE           
Sbjct: 216 QLPPPYGTSQKALYLSTESNLPTNRLSQLLEEHPVISTLPEGSPRPSLENILSITTIDLE 275

Query: 137 ---------TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
                      + V    + ++VIDS+ A   RAE       +    +A  + +  + L 
Sbjct: 276 SQDHILNYQIPVAVSRYNIGLVVIDSITA-NYRAE-SDLDNVAGLLARAWQLKKLGQFLR 333

Query: 188 SSISRSKCILVFINQMRMKIGVM 210
           +  ++    +V  NQ+  +I + 
Sbjct: 334 NLAAKQNIAIVVANQVSDRIQMD 356


>gi|149053640|gb|EDM05457.1| RAD51-like 3 (S. cerevisiae) (predicted), isoform CRA_e [Rattus
           norvegicus]
          Length = 275

 Score = 40.2 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
             +     ++S+G   LD  L   G   G + EI G   SGKT + L   A    
Sbjct: 73  EELKTSTAILSTGIGSLDKLL-DAGLYTGELTEIVGGPGSGKTQVCLCVAANVAH 126


>gi|149053636|gb|EDM05453.1| RAD51-like 3 (S. cerevisiae) (predicted), isoform CRA_a [Rattus
           norvegicus]
          Length = 233

 Score = 40.2 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
             +     ++S+G   LD  L   G   G + EI G   SGKT + L   A    
Sbjct: 73  EELKTSTAILSTGIGSLDKLL-DAGLYTGELTEIVGGPGSGKTQVCLCVAANVAH 126


>gi|323305619|gb|EGA59360.1| Rad55p [Saccharomyces cerevisiae FostersB]
          Length = 406

 Score = 40.2 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 68/191 (35%), Gaps = 23/191 (12%)

Query: 33  MQLG--SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA- 89
           M LG      I E  + +SSG  GLD  L + GF    I EI+GP   GKT   +  +  
Sbjct: 1   MSLGIPLSQLIVESPKPLSSGITGLDEILNL-GFQARSIYEIFGPPGIGKTNFGIQLVCN 59

Query: 90  ------QSQKTGGTCAFVDAEHALD----SIYARKLGVDLKNLLISQPDTGEQAL---EI 136
                 QS+       +++    +         +K  +  +N+   +     Q L   + 
Sbjct: 60  SLEGIQQSEINDDKILWIETFQEMPINILRERFQKFKIVEENVKRVRITKFGQLLYFFQN 119

Query: 137 TDMLVRSGAVDIIVIDSVAALT-----PRAEIEGDMGESLPGMQAR-LMSQALRKLTSSI 190
              L +S    +++ID  + L        ++  G M +          +      +T   
Sbjct: 120 LFKLSQSVRYKLVIIDGFSQLVCDHLCTLSKRGGGMIDKTIHELKCRHLVLIFTVMTKYT 179

Query: 191 SRSKCILVFIN 201
             +   ++ +N
Sbjct: 180 HSTGSTIIVLN 190


>gi|302349262|ref|YP_003816900.1| Archaeal flagellar like-protein H [Acidilobus saccharovorans
           345-15]
 gi|302329674|gb|ADL19869.1| Archaeal flagellar like-protein H [Acidilobus saccharovorans
           345-15]
          Length = 229

 Score = 40.2 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           ++S+G+  +D  LG GG P   ++ + G   SGKT++AL       + G +  +   E  
Sbjct: 2   ILSTGNEEIDSRLG-GGIPHPSLIAVEGDNGSGKTSIALLLAQTYLRAGLSVVYFTNEGG 60

Query: 107 LD 108
             
Sbjct: 61  SY 62


>gi|225560118|gb|EEH08400.1| RecA family ATPase Rhp57 [Ajellomyces capsulatus G186AR]
          Length = 655

 Score = 40.2 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 72/203 (35%), Gaps = 30/203 (14%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           I++LG +      +  VS+    LD  L  GG   G + E+ G    GKT   LH +   
Sbjct: 166 IVKLGHR---VPELSFVSTLDPVLDRVLA-GGISTGYVTELAGESGCGKTQFLLHLLLSV 221

Query: 92  QKTGG-----TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI---------- 136
           Q            ++  E  L +    +L  +   +      +   +LE           
Sbjct: 222 QLPPPYGTSQKALYLSTESNLPTNRLSQLLEEHPVISTLPEGSPRPSLENILSITTIDLE 281

Query: 137 ---------TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
                      + V    + ++VIDS+ A   RAE       +    +A  + +  + L 
Sbjct: 282 SQDHILNYQIPVAVSRYNIGLVVIDSITA-NYRAE-SDLDNVAGLLARAWQLKKLGQFLR 339

Query: 188 SSISRSKCILVFINQMRMKIGVM 210
           +  ++    +V  NQ+  +I + 
Sbjct: 340 NLAAKQNIAIVVANQVSDRIQMD 362


>gi|149173763|ref|ZP_01852392.1| hypothetical protein PM8797T_04980 [Planctomyces maris DSM 8797]
 gi|148847293|gb|EDL61627.1| hypothetical protein PM8797T_04980 [Planctomyces maris DSM 8797]
          Length = 293

 Score = 40.2 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-QKTGGTCAFVDA 103
           +G   LD  L  GG   G++  + G    GKT L L       Q+ G T    D 
Sbjct: 8   TGIPELDELLS-GGLLPGKLTVVLGATGIGKTQLGLQFAEAGLQQEGQTGVLFDM 61


>gi|302500272|ref|XP_003012130.1| DNA repair protein (Rad57), putative [Arthroderma benhamiae CBS
           112371]
 gi|291175686|gb|EFE31490.1| DNA repair protein (Rad57), putative [Arthroderma benhamiae CBS
           112371]
          Length = 599

 Score = 40.2 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 6/95 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-----GTCAFVD 102
           +S+    LD AL  GG   G + E+ G   +GKT   LH +   Q            ++ 
Sbjct: 119 ISTLDPILDSALS-GGISTGYLTEVTGESGAGKTQFLLHLLLSVQLPAPHGLSKNALYIS 177

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
            E  L +    +L  + + L    P+T   +L+  
Sbjct: 178 TESDLATNRLSQLINEHQTLQALHPETPRPSLDNI 212


>gi|163750040|ref|ZP_02157284.1| putative DNA repair protein radA (DNA repair protein sms)
           [Shewanella benthica KT99]
 gi|161330314|gb|EDQ01295.1| putative DNA repair protein radA (DNA repair protein sms)
           [Shewanella benthica KT99]
          Length = 457

 Score = 40.2 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 53/144 (36%), Gaps = 10/144 (6%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E V +G   LD  L  GG   G +  I G   +GKTTL L  +           +  AE 
Sbjct: 71  EKVLTGIGELDRVL-CGGLTTGSVNIISGDPGAGKTTL-LSDLISRMSQLMPSLYCTAEE 128

Query: 106 ALDSIYAR----KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           +L     R    KL  +  NL +    + E  +   D       +   VIDS+ A+    
Sbjct: 129 SLSQFKNRVTRLKLSCNEDNLYLMAETSVEAIIAELDA----KQIKFAVIDSIQAVVTDL 184

Query: 162 EIEGDMGESLPGMQARLMSQALRK 185
                   S     A+ ++Q  ++
Sbjct: 185 ANGSPGSPSQVKSSAQALTQYCKQ 208


>gi|320109333|ref|YP_004184923.1| putative circadian clock protein, KaiC [Terriglobus saanensis
           SP1PR4]
 gi|319927854|gb|ADV84929.1| putative circadian clock protein, KaiC [Terriglobus saanensis
           SP1PR4]
          Length = 496

 Score = 40.2 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            + +G  GL+  L  GG P G++  + G   +GKTTLA+  I    K G    +V    +
Sbjct: 16  RIDTGVHGLNDILN-GGLPGGQMYLLEGDPGTGKTTLAMQFIIAGVKKGERALYVTLSES 74

Query: 107 LDSIYARKL--GVDLKNLLISQ 126
              +    L  G +++ L I++
Sbjct: 75  KAELEGSALSHGWNIELLPIAE 96



 Score = 37.9 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + S    LD   G GG  +G    + GP  SGK+TLA+     +   G        + 
Sbjct: 256 ERIQSILPSLDKMFG-GGINRGSSTLLIGPSGSGKSTLAMAYAYAAASRGDRAIVYAFDE 314

Query: 106 ALD--SIYARKLGVDLK 120
            L      A+ LG+D++
Sbjct: 315 ILRTAQDRAKSLGMDVQ 331


>gi|154288046|ref|XP_001544818.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150408459|gb|EDN04000.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 587

 Score = 40.2 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 72/203 (35%), Gaps = 30/203 (14%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           I++LG +      +  VS+    LD  L  GG   G + E+ G    GKT   LH +   
Sbjct: 98  IVKLGHR---VPELSFVSTLDPVLDRVLA-GGISTGYVTELAGESGCGKTQFLLHLLLSV 153

Query: 92  QKTGG-----TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI---------- 136
           Q            ++  E  L +    +L  +   +      +   +LE           
Sbjct: 154 QLPPPYGTSQKALYLSTESNLPTNRLSQLLEEHPVISTLPEGSPRPSLENILSITTIDLE 213

Query: 137 ---------TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
                      + V    + ++VIDS+ A   RAE       +    +A  + +  + L 
Sbjct: 214 SQDHILNYQIPVAVSRYNIGLVVIDSITA-NYRAE-SDLDNVAGLLARAWQLKKLGQFLR 271

Query: 188 SSISRSKCILVFINQMRMKIGVM 210
           +  ++    +V  NQ+  +I + 
Sbjct: 272 NLAAKQNIAIVVANQVSDRIQMD 294


>gi|83645759|ref|YP_434194.1| replicative DNA helicase [Hahella chejuensis KCTC 2396]
 gi|83633802|gb|ABC29769.1| Replicative DNA helicase [Hahella chejuensis KCTC 2396]
          Length = 236

 Score = 40.2 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 77/207 (37%), Gaps = 27/207 (13%)

Query: 12  KSKALE--------AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           K+KAL+         AL QI R  G  +   L  +   F       +    LD       
Sbjct: 13  KAKALKRSQSLTMTEALDQIARAEGFSSWSLLQPKVKAFTP----KTTEELLDYLH---- 64

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
              G ++ I      GKTT+AL  + Q+ K G  C F   E+        KL    +   
Sbjct: 65  --PGDLLLIGARPGLGKTTMALQLLLQAIKQGRQCFFFSLEY-SKKALIEKLTALDQQFE 121

Query: 124 ISQPDTGEQAL-EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
           ++QP        EI+   + +   + +   S+ A+     ++ +  +         + Q 
Sbjct: 122 LNQPLLALDISDEISADYIINQTKERVTEGSLIAVDYLQLLDQNRNK-------PPLQQQ 174

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGV 209
           +  L S     KCILVFI+Q+  +   
Sbjct: 175 IEDLKSYARAKKCILVFISQIDRRFDE 201


>gi|331008500|gb|EGH88556.1| hypothetical protein PSYTB_02099 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 206

 Score = 40.2 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 11/137 (8%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI-Y 73
           +L+A L   +R   KG       +      +    SG   LD AL  GG+P   + EI  
Sbjct: 6   SLDALLD--ERRVWKG-------RQQSAPQVSPHPSGHALLDSALPTGGWPAAALTEILI 56

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
               SG+  L   ++A+    G     V   +          GVDL+ L++ +    + A
Sbjct: 57  PANGSGELRLLWPSLARLSAIGERIVLVAPPYIPYPQAWLAAGVDLRQLVVIEAGPRD-A 115

Query: 134 LEITDMLVRSGAVDIIV 150
           L   +  +RSG+   +V
Sbjct: 116 LWAAEQCLRSGSCGAVV 132


>gi|313680978|ref|YP_004058717.1| circadian clock protein, kaic [Oceanithermus profundus DSM 14977]
 gi|313153693|gb|ADR37544.1| putative circadian clock protein, KaiC [Oceanithermus profundus DSM
           14977]
          Length = 288

 Score = 40.2 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 51/166 (30%), Gaps = 29/166 (17%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIAL-------------GIGGFPKGRIVEIYGPES 77
           +I+           IE V SG  GLD                 +GG P+   V + G   
Sbjct: 11  SILGAADLAQKIPEIEGVPSGVEGLDELFYTVVQERGKPVVKPLGGLPRRAAVHVTGTSD 70

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAE--------HALDSIYARKLGVDL-KNLLISQPD 128
           +GK+  A          G    FV  E               A  LG D+ + + +    
Sbjct: 71  TGKSLFAEQYALAQAARGEGAVFVTVETPAPFVDAGLEQRRLAMGLGRDVLEGVTLVDAA 130

Query: 129 TGEQALEITDMLVRSGAVDI-------IVIDSVAALTPRAEIEGDM 167
           +  +  E    L  +            +V+DS+  L    E+   +
Sbjct: 131 SHGELREDLPTLFATLDAAFEATGARHLVVDSLTGLYEAREMTARL 176


>gi|289649728|ref|ZP_06481071.1| hypothetical protein Psyrpa2_18558 [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 207

 Score = 40.2 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 11/137 (8%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI-Y 73
           +L+A L   +R   KG       +      +    SG   LD AL  GG+P   + EI  
Sbjct: 7   SLDALLD--ERRVWKG-------RQQSAPQVSPHPSGHALLDSALPTGGWPAAALTEILI 57

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
               SG+  L   ++A+    G     V   +          GVDL+ L++ +    + A
Sbjct: 58  PANGSGELRLLWPSLARLSAIGERIVLVAPPYIPYPQAWLAAGVDLRQLVVIEAGPRD-A 116

Query: 134 LEITDMLVRSGAVDIIV 150
           L   +  +RSG+   +V
Sbjct: 117 LWAAEQCLRSGSCGAVV 133


>gi|149180778|ref|ZP_01859281.1| replicative DNA helicase [Bacillus sp. SG-1]
 gi|148851568|gb|EDL65715.1| replicative DNA helicase [Bacillus sp. SG-1]
          Length = 421

 Score = 40.2 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 6/102 (5%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +SSG   LD     GGF  G ++ + G  S GKT   L+    +   G    F   E + 
Sbjct: 165 ISSGYENLDGL--TGGFKPGELIIVAGRPSMGKTAFVLNLAYNAASKGTIVDFFSLEMSE 222

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
             +Y R +      ++       +    I        A + +
Sbjct: 223 VQLYQRMIS----RMVCIDASKWQNPSRIFSEKETQKANEAL 260


>gi|116754846|ref|YP_843964.1| putative circadian clock protein, KaiC [Methanosaeta thermophila
           PT]
 gi|116666297|gb|ABK15324.1| putative circadian clock protein, KaiC [Methanosaeta thermophila
           PT]
          Length = 248

 Score = 40.2 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 4/82 (4%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV---DAE 104
           V SG  G D  L  GGF KG +  + G   +GKT  A   I +  K G     +   ++ 
Sbjct: 17  VGSGIPGFDE-LVNGGFNKGTVNTVTGGSGTGKTVFATQFIYEGIKMGDKGMIITPSESA 75

Query: 105 HALDSIYARKLGVDLKNLLISQ 126
            +L          DL  L   +
Sbjct: 76  ESLKREMYSSFNWDLWKLEEEK 97


>gi|150377806|ref|YP_001314401.1| putative circadian clock protein, KaiC [Sinorhizobium medicae
           WSM419]
 gi|150032353|gb|ABR64468.1| putative circadian clock protein, KaiC [Sinorhizobium medicae
           WSM419]
          Length = 481

 Score = 40.2 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
             +  +   VVSSG  GLD  +  GG P   +  I G   SGKTT AL  +    + G  
Sbjct: 2   NVAERKKQTVVSSGVSGLDEII-RGGLPASNLYIIQGAPGSGKTTAALQFLRAGVELGEP 60

Query: 98  CAFVDAEHA 106
           C +V     
Sbjct: 61  CIYVSLSQT 69


>gi|253572387|ref|ZP_04849790.1| replicative DNA helicase [Bacteroides sp. 1_1_6]
 gi|251838162|gb|EES66250.1| replicative DNA helicase [Bacteroides sp. 1_1_6]
          Length = 474

 Score = 40.2 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 53/172 (30%), Gaps = 23/172 (13%)

Query: 4   RKEMNIVDKSKALEA--ALSQIQRVYGKGAIMQ-----LGSQ--------GSIFEGIEVV 48
            + M+I D    ++A   L +++  +G    M+     +                GI  +
Sbjct: 129 DETMDIAD--TLIDAHNLLDRLEGEFGHNDHMRDMDTLMTDTMEEAEQRIAKSANGITGI 186

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE---H 105
            +G   L+      G   G ++ I    S GKT  ALH   Q+       A    E    
Sbjct: 187 PTGLTDLNRM--TSGLQNGELIAIAARPSVGKTAFALHLARQAAMQRFAVAVYSLEMQGE 244

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
            L   +    G D+              +        + A   I +D   ++
Sbjct: 245 RLADRWLLSAG-DINPYRWRTGIPNPHEVAEAHTAAAALARLPIHVDDSTSI 295


>gi|14601707|ref|NP_148248.1| flagellar accessory protein FlaH [Aeropyrum pernix K1]
 gi|5105590|dbj|BAA80903.1| archaeal flagellar protein H homolog [Aeropyrum pernix K1]
          Length = 245

 Score = 40.2 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 35  LGSQGSIFE--GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           + S G+      +E+V +G+   DI LG GG P   ++ I GP  +GKT L+   +  + 
Sbjct: 1   MASNGAGMPEGKVEIVPTGNEEFDIKLG-GGVPFPSLLIIEGPHGTGKTALSQLFLKGAL 59

Query: 93  KTG--GTCAFVDAEHALDSIYARKLGVDLKNLL 123
             G  G     ++      + +   G+ L    
Sbjct: 60  DMGLRGLAVVTESTIRGYILKSEAAGISLTEHF 92


>gi|22298647|ref|NP_681894.1| DNA repair protein RadA [Thermosynechococcus elongatus BP-1]
 gi|22294827|dbj|BAC08656.1| DNA repair protein [Thermosynechococcus elongatus BP-1]
          Length = 463

 Score = 40.2 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 56/149 (37%), Gaps = 6/149 (4%)

Query: 39  GSIFEGIEVVS-SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           G I E  +  S SG   LD  LG GG   G +V + G    GK+TL L   A   +    
Sbjct: 65  GEISEQTQSRSASGFTELDRVLG-GGIVAGSLVLVAGEPGIGKSTLLLQMAATLGQQQRV 123

Query: 98  CAFVDAEHALD-SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
                 E A    + +++LG+     L    +T    LE+    +      + +IDS+ A
Sbjct: 124 LYVCAEESAQQVKLRSQRLGLSAPPSLYLLAETD---LEVILQELTHLQPHLAIIDSIQA 180

Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRK 185
           +            S     A  + +  ++
Sbjct: 181 VYLPQLTAAPGSVSQVREGAAALMRLAKR 209


>gi|158295464|ref|XP_001688807.1| AGAP006164-PA [Anopheles gambiae str. PEST]
 gi|157016050|gb|EDO63813.1| AGAP006164-PA [Anopheles gambiae str. PEST]
          Length = 315

 Score = 40.2 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 68/203 (33%), Gaps = 18/203 (8%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL-HTIAQSQKTGGTCAFVDAEHA 106
           +S+G   LD  L  GG   G I E+ G   +GKT L+L       ++ G    F+D +  
Sbjct: 82  LSTGVPSLDALLQGGGLLPGHIYELCGESGTGKTLLSLTMASNVVKQPGSMAYFIDTKCD 141

Query: 107 LDSIYARKLGVDLKNLLISQPDTGE-----QALEITDMLVRSGAVDIIVIDSVAALTPRA 161
                 +++       L  Q          + L     +     + +++IDS+ +L    
Sbjct: 142 FSGRKVQQILDSDDRKLSEQELGHAMARTVEELAAGRYVDEGTNLKLLIIDSLPSLWYLY 201

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI--GVMFGSPETTTG 219
           +      E        L+++ +  L    ++    +V IN     +             G
Sbjct: 202 QDAQSSVE-----PLGLLTKLICSLRKLAAQRAVAVVLINLTVRVVEGMTEGKRKLCPNG 256

Query: 220 GNA-----LKFYSSVRLDIRRVG 237
             +      +     RL + R  
Sbjct: 257 NYSALGRYWESAPGTRLLLERHE 279


>gi|170742618|ref|YP_001771273.1| hypothetical protein M446_4498 [Methylobacterium sp. 4-46]
 gi|168196892|gb|ACA18839.1| conserved hypothetical protein [Methylobacterium sp. 4-46]
          Length = 249

 Score = 40.2 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 42/131 (32%), Gaps = 15/131 (11%)

Query: 6   EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65
           E     +  AL   +  ++R  G GA                +  G   +D  L  GG  
Sbjct: 3   ETGREQRLAALRERIGGLERDAGAGA-------------RPPLPFGIPAIDRHLPGGGLR 49

Query: 66  KGRIVEI--YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
           +  + E+   GP +      AL       +  G   +  A   L +     +G+    +L
Sbjct: 50  RAALHEVVETGPSAGHAALAALFVGGLLARLDGPVLWCLAGRDLFAPGLAAVGLHPDRVL 109

Query: 124 ISQPDTGEQAL 134
            ++     + L
Sbjct: 110 YAETRRDAEVL 120


>gi|58583064|ref|YP_202080.1| hypothetical protein XOO3441 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84624898|ref|YP_452270.1| hypothetical protein XOO_3241 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188577891|ref|YP_001914820.1| hypothetical protein PXO_02089 [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|58427658|gb|AAW76695.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84368838|dbj|BAE69996.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188522343|gb|ACD60288.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 216

 Score = 40.2 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 4/121 (3%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE-SSGKTTLALHTIA 89
            + + G   +   G E  S+G   LD  L  GG+P+  + E+  P    G+  L L T+A
Sbjct: 27  TVWRAGQGRATVNGGE--STGHAALDALLPDGGWPRRALTELLLPAHGIGEIALLLPTLA 84

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           +    G     V       +   +  GV L++L + Q +    AL   +  +RSGA   +
Sbjct: 85  RMTARGSRVVLVAPPFIPYAPAWQAGGVVLEHLEVVQAEPRA-ALWAFEQCLRSGACAAV 143

Query: 150 V 150
           +
Sbjct: 144 L 144


>gi|282881629|ref|ZP_06290292.1| DNA repair protein RadA [Prevotella timonensis CRIS 5C-B1]
 gi|281304388|gb|EFA96485.1| DNA repair protein RadA [Prevotella timonensis CRIS 5C-B1]
          Length = 462

 Score = 40.2 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 60/192 (31%), Gaps = 18/192 (9%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
            L+  LG GG   G IV + G    GK+TL L TI           +V  E +   +  R
Sbjct: 84  ELNRVLG-GGLVPGSIVLLGGEPGIGKSTLTLQTILHLPNK--KVLYVSGEESAHQLKMR 140

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
              +  +     +      +LE     V     D+++IDS+  +            +   
Sbjct: 141 ADRITTEQNNNVEILCET-SLEHIFNQVLEVKPDLLIIDSIQTIATNHVDSSPGSIAQVR 199

Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQM-------RMKIGVMFGSPETTTGGNALKFY 226
             A L       L      S   ++ I  +         KI            G+    Y
Sbjct: 200 ECAAL-------LLRLAKTSGIPILLIGHINKEGTLAGPKILEHMVDTVIQFEGDQHYMY 252

Query: 227 SSVRLDIRRVGS 238
             +R    R GS
Sbjct: 253 RILRSIKNRFGS 264


>gi|190404956|gb|EDV08223.1| DNA repair protein RAD55 [Saccharomyces cerevisiae RM11-1a]
 gi|256269855|gb|EEU05114.1| Rad55p [Saccharomyces cerevisiae JAY291]
 gi|259145319|emb|CAY78583.1| Rad55p [Saccharomyces cerevisiae EC1118]
 gi|323334196|gb|EGA75579.1| Rad55p [Saccharomyces cerevisiae AWRI796]
          Length = 406

 Score = 40.2 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 33 MQLG--SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
          M LG      I E  + +SSG  GLD  L + GF    I EI+GP   GKT   +  +  
Sbjct: 1  MSLGIPLSQLIVESPKPLSSGITGLDEILNL-GFQARSIYEIFGPPGIGKTNFGIQLVCN 59


>gi|33866775|ref|NP_898334.1| DNA repair protein RadA [Synechococcus sp. WH 8102]
 gi|33639376|emb|CAE08760.1| putative DNA repair protein RadA [Synechococcus sp. WH 8102]
          Length = 464

 Score = 40.2 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + I  + +GS   D  LG GG   G +V + G    GK+TL L + +       +  +V 
Sbjct: 70  QPIRRLPTGSGEFDRVLG-GGLVPGSLVLVGGDPGIGKSTLLLQSASTMAAQ-TSVLYVS 127

Query: 103 AEHALDSIYAR 113
           AE +   +  R
Sbjct: 128 AEESAQQVKLR 138


>gi|330507530|ref|YP_004383958.1| KaiC [Methanosaeta concilii GP-6]
 gi|328928338|gb|AEB68140.1| KaiC [Methanosaeta concilii GP-6]
          Length = 232

 Score = 40.2 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 4/76 (5%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV---DAEHA 106
           SG  G D  +G GGF +G +  I G   +GKT  A   I      G     +   ++   
Sbjct: 3   SGIPGFDEMVG-GGFHQGTVNTITGSSGTGKTVFASQFIHHGIGQGEKGMIITPSESAEY 61

Query: 107 LDSIYARKLGVDLKNL 122
           +        G D   L
Sbjct: 62  MRREMMSSFGWDFGAL 77


>gi|34808795|gb|AAQ82577.1| KaiC [Nostoc sp. 'Peltigera membranacea AL#21 cyanobiont']
          Length = 211

 Score = 40.2 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 47/143 (32%), Gaps = 22/143 (15%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGGTCAF 100
           G+E + +   G D  +  GG P GR   + G   +GKT L+L  +          G    
Sbjct: 17  GVEKIRTMIEGFDD-ISHGGLPIGRTTLVSGTSGTGKTLLSLQFLYNGITYFDEAGVFVT 75

Query: 101 VDAEHALDSIYARKLGVDLKNLLIS------QPDTGEQALEI------------TDMLVR 142
            +   +     A   G +L  L+              +  +I                +R
Sbjct: 76  FEESPSDIIKNAHVFGWNLPRLIEEGKLFILDASPDPEGQDIVGNFDLSALIERLQYAIR 135

Query: 143 SGAVDIIVIDSVAALTPRAEIEG 165
                 + IDS+ A+  + E  G
Sbjct: 136 KYKAKRVSIDSMTAVFQQYEAMG 158


>gi|308802163|ref|XP_003078395.1| Rad51B protein (ISS) [Ostreococcus tauri]
 gi|116056847|emb|CAL53136.1| Rad51B protein (ISS) [Ostreococcus tauri]
          Length = 618

 Score = 40.2 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 2/86 (2%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+  +  +      +  +    +D AL  GG    +I E+ G   +GKT L       +Q
Sbjct: 320 MRPPNATAASATCSIARTRCDAIDAAL-RGGVRTRQITEVCGESGTGKTHLCAQLALFAQ 378

Query: 93  -KTGGTCAFVDAEHALDSIYARKLGV 117
              GG+  +V  E    +   R++  
Sbjct: 379 LDLGGSTVYVHTEGRAPTDVMRRMTT 404


>gi|6320281|ref|NP_010361.1| Rad55p [Saccharomyces cerevisiae S288c]
 gi|730467|sp|P38953|RAD55_YEAST RecName: Full=DNA repair protein RAD55
 gi|558247|emb|CAA57603.1| D4426 [Saccharomyces cerevisiae]
 gi|577803|emb|CAA86798.1| DNA repair protein [Saccharomyces cerevisiae]
 gi|1321666|dbj|BAA01284.1| RAD55 [Saccharomyces cerevisiae]
 gi|1431541|emb|CAA98895.1| RAD55 [Saccharomyces cerevisiae]
 gi|51830232|gb|AAU09690.1| YDR076W [Saccharomyces cerevisiae]
 gi|285811098|tpg|DAA11922.1| TPA: Rad55p [Saccharomyces cerevisiae S288c]
          Length = 406

 Score = 40.2 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 33 MQLG--SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
          M LG      I E  + +SSG  GLD  L + GF    I EI+GP   GKT   +  +  
Sbjct: 1  MSLGIPLSQLIVESPKPLSSGITGLDEILNL-GFQARSIYEIFGPPGIGKTNFGIQLVCN 59


>gi|149194175|ref|ZP_01871273.1| predicted repair protein [Caminibacter mediatlanticus TB-2]
 gi|149136128|gb|EDM24606.1| predicted repair protein [Caminibacter mediatlanticus TB-2]
          Length = 432

 Score = 39.8 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 53/143 (37%), Gaps = 7/143 (4%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E IE  SSG   LD+ LG GG   G +V I G    GK+TL L     +        +V 
Sbjct: 59  EEIERFSSGDNELDLVLG-GGIVPGSLVLIGGSPGVGKSTLML---KLAGNLDKKILYVA 114

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E +   I  R   +++KN          + +    +       ++++IDS+  +     
Sbjct: 115 GEESPGQIKIRADRLNVKN---QNLYLMPEIVVENIIEEIKKGYELVIIDSIQTIYSENL 171

Query: 163 IEGDMGESLPGMQARLMSQALRK 185
                  S        + +  ++
Sbjct: 172 QSAPGSVSQVREATFELMRVAKE 194


>gi|120437859|ref|YP_863545.1| DNA repair protein RadA [Gramella forsetii KT0803]
 gi|117580009|emb|CAL68478.1| DNA repair protein RadA [Gramella forsetii KT0803]
          Length = 454

 Score = 39.8 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 65/196 (33%), Gaps = 20/196 (10%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G+  LD  LG GG   G +  + G    GK+TL L              +V  E +   
Sbjct: 76  TGNNELDRVLG-GGLVPGSLTLLGGEPGIGKSTLLLQISLGLNYR---VLYVSGEESQQQ 131

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           I  R     +     +     E   +     +     ++++IDS+  L        D  E
Sbjct: 132 IKMRA--ERINPNPANCFILTETKTQSIFRQIEEVEPEVVIIDSIQTLHS------DYIE 183

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM-------KIGVMFGSPETTTGGNA 222
           S PG  ++ + +   +L      S   ++ I  +         K+            G+ 
Sbjct: 184 SAPGSISQ-IRECTAELIKFAKESNTPVILIGHITKEGSIAGPKVLEHMVDTVLQFEGDR 242

Query: 223 LKFYSSVRLDIRRVGS 238
              Y  +R    R GS
Sbjct: 243 NHVYRILRAHKNRFGS 258


>gi|325662729|ref|ZP_08151323.1| hypothetical protein HMPREF0490_02063 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470966|gb|EGC74194.1| hypothetical protein HMPREF0490_02063 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 335

 Score = 39.8 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 97/269 (36%), Gaps = 33/269 (12%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA---------LDSIYARK 114
            P G++  I G    GKTT+ L  IA+  K     +      +         +       
Sbjct: 36  IPYGKVTIIQGDPGEGKTTVVLQIIAKLTKGEAILSETSEGKSEETGVPINVIYQTAEDG 95

Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI----IVIDSVAALTPRAEIEGDMGES 170
           LG  +K  L++      + L I D       VD      +I + A L     I+G +G  
Sbjct: 96  LGDTIKPRLLAAGADCSRVLVIDDQDQPLTMVDARLEEAIIQTKARLVVLDPIQGFLGAG 155

Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230
           +   +A  +   +++++    + +C ++ I  M               G  ++ F ++ R
Sbjct: 156 VDMHRANEIRPLMKRISVLAEKYQCAIILIGHMNKNSNGKSSYR----GLGSIDFQAAAR 211

Query: 231 LDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS 290
             +  VG +KD+  I      +  VK+ +A     + F +   +G  + G+         
Sbjct: 212 SVLI-VGRVKDEPEI----RVICHVKSSLAPEGDAIAFRLDKEKGFHWIGKYDISAEDL- 265

Query: 291 IVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
                       G   GQ   ++K FL+E
Sbjct: 266 ----------LSGDGRGQKIRSAKEFLKE 284


>gi|509494|gb|AAA19688.1| DNA repair protein [Saccharomyces cerevisiae]
          Length = 406

 Score = 39.8 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 33 MQLG--SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
          M LG      I E  + +SSG  GLD  L + GF    I EI+GP   GKT   +  +  
Sbjct: 1  MSLGIPLSQLIVESPKPLSSGITGLDEILNL-GFQARSIYEIFGPPGIGKTNFGIQLVCN 59


>gi|72382752|ref|YP_292107.1| circadian clock protein KaiC [Prochlorococcus marinus str. NATL2A]
 gi|72002602|gb|AAZ58404.1| circadian clock protein KaiC [Prochlorococcus marinus str. NATL2A]
          Length = 500

 Score = 39.8 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 59/185 (31%), Gaps = 30/185 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       +SSG   LD   G GG+ +  I+   G   +GKT L    +  + 
Sbjct: 237 MRLTQRSSNI----RISSGVQDLDEMCG-GGYFQDSIILATGATGTGKTMLVSKFVEDAY 291

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
                      E +   +        +            ++ + P++   E  L+I    
Sbjct: 292 LNKERTILFAYEESRAQLLRNATSWGIDFEKMEADGLLKIICAYPESTGLEDHLQIIKTE 351

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       + IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 352 ISEYKPSRMAIDSLSALA-------------RGVSLNAFRQFVIGVTGYAKQEEIAGFFT 398

Query: 201 NQMRM 205
           N    
Sbjct: 399 NTAEE 403



 Score = 37.9 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 4/86 (4%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA---LHTIAQSQKTGGTCAF 100
            ++ + +G  G D     GG P  R   + G   +GKT  +   LH    +    G    
Sbjct: 2   HVQKLPTGIEGFDDIC-HGGLPNARSTLVSGTSGTGKTVFSLQYLHHGICNFDEPGIFVT 60

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQ 126
            +         A   G DL+ L+   
Sbjct: 61  FEESPLDIIRNAASFGWDLQALIDQN 86


>gi|150019934|ref|YP_001305288.1| DNA repair protein RadA [Thermosipho melanesiensis BI429]
 gi|149792455|gb|ABR29903.1| DNA repair protein RadA [Thermosipho melanesiensis BI429]
          Length = 444

 Score = 39.8 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 85/227 (37%), Gaps = 15/227 (6%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           L +   I   +  + +    +D   G GG   G+++ + G    GK+TLAL  I+     
Sbjct: 52  LLNDDLIGGEVRRIKTNKEEIDGLFG-GGIVPGQVILLGGEPGVGKSTLALQ-ISDLISK 109

Query: 95  GGTCAFVDAEHALDS--IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
            G   +V  E ++    I A++LG+   NL +S     +  LE   + ++  +   +V+D
Sbjct: 110 RGKVLYVSGEESIKQIGIRAKRLGIKNNNLYVSI----DNELEAVFVNLKKISPVFVVLD 165

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           S+  +          G          +   + KL      S   ++ I  +  +  +   
Sbjct: 166 SIQTVFSNKVDGVPGG-------ILQLRTVVEKLRKYSKESGVPILLIAHVNKEGNIAGP 218

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259
                     + F      D+R +  IK++   +G     +++   +
Sbjct: 219 KLVEHIVDTVVYFEGEKTTDLRILRVIKNRFGPSGEIAVFQMMNTGL 265


>gi|83954685|ref|ZP_00963396.1| hypothetical protein NAS141_15728 [Sulfitobacter sp. NAS-14.1]
 gi|83840969|gb|EAP80140.1| hypothetical protein NAS141_15728 [Sulfitobacter sp. NAS-14.1]
          Length = 505

 Score = 39.8 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           +  ++G   LD  LG GG   G    + GP   GKTT A+  +  +   G   A+   + 
Sbjct: 251 DAATTGLDELDALLG-GGLVPGTNALLAGPAGVGKTTTAVRCMLAALNRGEKAAYFLFDE 309

Query: 106 ALDSI--YARKLGVDLKNLLIS 125
            L ++   +R LG+D++  + +
Sbjct: 310 RLSTLLTRSRALGMDVQPFIDN 331


>gi|281704376|gb|ADA77133.1| disrupted meiotic cDNA 1 [Bromus catharticus]
          Length = 115

 Score = 39.8 bits (91), Expect = 0.60,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 6/103 (5%)

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
               +      ++++DSV AL          G      + + ++Q L +LT         
Sbjct: 12  LAAKMAEEPFRLLIVDSVIALFR----VDFRGRGELAERQQKLAQMLSRLTKIAEEFNVA 67

Query: 197 LVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVG 237
           +   NQ+    G       P+   GG+ L   +++RL +R+  
Sbjct: 68  VYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLRKGK 110


>gi|307726424|ref|YP_003909637.1| putative circadian clock protein, KaiC [Burkholderia sp. CCGE1003]
 gi|307586949|gb|ADN60346.1| putative circadian clock protein, KaiC [Burkholderia sp. CCGE1003]
          Length = 503

 Score = 39.8 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + + SG  GLD  LG GG    R+  + G   +GKTTLAL  + +  + G    ++    
Sbjct: 9   DRLRSGIEGLDDILG-GGLTPHRMYLVEGAPGTGKTTLALQFLLEGVQEGQVGLYITLSE 67

Query: 106 ALDSIYARKL--GVDLKNLLI 124
               + +     G DL    I
Sbjct: 68  TRSELISVADSHGWDLSQFRI 88


>gi|288934647|ref|YP_003438706.1| phage replicative helicase, DnaB family [Klebsiella variicola
           At-22]
 gi|288889356|gb|ADC57674.1| phage replicative helicase, DnaB family [Klebsiella variicola
           At-22]
          Length = 477

 Score = 39.8 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 65/201 (32%), Gaps = 21/201 (10%)

Query: 4   RKEMNIVDKSKALEAALSQIQ-----------RVYGKGAIMQ-----LGSQGSIFEGIEV 47
           R  M+ V+K +A+++  +Q+            R +G+  +M      L  +         
Sbjct: 133 RNGMSAVEKYEAIQSIFTQLTDHSKTGSRRGLRSFGE--VMDDWVNDLEKRFDPSGEQRG 190

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G   LD  L   G  KG +  I      GKTTL               A +    +L
Sbjct: 191 MSTGIPSLDRLLAPKGLVKGSLFVIGARPKMGKTTLYGQMAINCAVREKKPALM---FSL 247

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
           +    + L   +       P                G  D     ++A     +EI+   
Sbjct: 248 EMPSDQILEKLVGQKSGINPSIFYMPATDDADEQYQGDYDGDFKKAIATAGRLSEIDMLY 307

Query: 168 GESLPGMQARLMSQALRKLTS 188
            +  PG+    +    R++  
Sbjct: 308 IDDTPGLSLAHIVSECRRIKR 328


>gi|212634098|ref|YP_002310623.1| DNA repair protein RadA [Shewanella piezotolerans WP3]
 gi|212555582|gb|ACJ28036.1| DNA repair protein RadA [Shewanella piezotolerans WP3]
          Length = 457

 Score = 39.8 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 51/140 (36%), Gaps = 10/140 (7%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   LD  L  GG   G +  I G   +GKTTL L  +           +  AE +L  
Sbjct: 75  TGIGELDRVL-CGGLTTGSVNIISGDPGAGKTTL-LSDLVARMSQLMPSLYCTAEESLSQ 132

Query: 110 IYAR----KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
              R    KL  +  NL +    + E  +   +       V   VIDS+ A+        
Sbjct: 133 FKNRVNRLKLNCNEDNLYLMAETSVEAIIAELEA----KQVKFAVIDSIQAVVTEMANGS 188

Query: 166 DMGESLPGMQARLMSQALRK 185
               S     A+ ++Q  ++
Sbjct: 189 PGSPSQVKGSAQALTQYCKQ 208


>gi|330808695|ref|YP_004353157.1| ImuA protein [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327376803|gb|AEA68153.1| ImuA protein [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 210

 Score = 39.8 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 1/103 (0%)

Query: 50  SGSLGLDIALGIGGFPKGRIVE-IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           +G   LD AL  GG+P+  + E +      G+  L   T+A+    G     V       
Sbjct: 31  TGHAALDAALPSGGWPEAALTELLIAAPGVGELQLVWPTLARLSAAGERIVLVAPPFVPY 90

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
               +  GVDL+ L + + D  +        L       ++  
Sbjct: 91  PQAWQNAGVDLQQLSVIRADERDALWATEQCLRSGSCGAVLCW 133


>gi|145591969|ref|YP_001153971.1| putative circadian clock protein, KaiC [Pyrobaculum arsenaticum DSM
           13514]
 gi|145283737|gb|ABP51319.1| putative circadian clock protein, KaiC [Pyrobaculum arsenaticum DSM
           13514]
          Length = 280

 Score = 39.8 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ----SQKTGGTCAFVD 102
            V +G   +D  L  GGF KG I  + G    GKT  +L  +        + G      +
Sbjct: 20  RVPTGIWYIDQLL-QGGFRKGEIYLVAGEAGQGKTIFSLQFLKTGAELYDEPGLYITIDE 78

Query: 103 AEHALDSIYARKLGVDLKNLLISQ 126
               +       LG DL+ L    
Sbjct: 79  PSEDVKRGVRESLGWDLEALETQN 102


>gi|119356823|ref|YP_911467.1| DNA repair protein RadA [Chlorobium phaeobacteroides DSM 266]
 gi|119354172|gb|ABL65043.1| DNA repair protein RadA [Chlorobium phaeobacteroides DSM 266]
          Length = 456

 Score = 39.8 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 5/111 (4%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   LD  LG GG  +   V + G    GK+TL L    +           +       
Sbjct: 73  TGIGELDRVLG-GGLMQASAVLVGGEPGIGKSTLMLQLAPRLLPEKVLYISGEESPNQIR 131

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
             A++L +   NL +         LE     +      +++IDS+  +   
Sbjct: 132 ERAKRLSIKADNLRLFAEVN----LERILSAIEREKPALVIIDSIQTVYSE 178


>gi|227888797|ref|ZP_04006602.1| DNA repair protein RadA [Lactobacillus johnsonii ATCC 33200]
 gi|227850634|gb|EEJ60720.1| DNA repair protein RadA [Lactobacillus johnsonii ATCC 33200]
          Length = 459

 Score = 39.8 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 4/116 (3%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E  + + +    L+  LG GG   G +V I G    GK+TL L       K         
Sbjct: 70  EKEKRIVTPFEELNRVLG-GGIVPGSLVLIGGDPGIGKSTLMLQITGALAKEHSVLYVSG 128

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
            E A              + ++  P+T  Q +      +     D +VIDS+  + 
Sbjct: 129 EESASQIKMRADRLGVSDSGILLYPETNMQNIR---DQIDEIKPDFLVIDSIQTMN 181


>gi|224373551|ref|YP_002607923.1| DNA repair protein RadA [Nautilia profundicola AmH]
 gi|223588903|gb|ACM92639.1| DNA repair protein RadA [Nautilia profundicola AmH]
          Length = 434

 Score = 39.8 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 57/158 (36%), Gaps = 14/158 (8%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
             SSG   LD+ LG GG   G +V I G    GK+TL +       K     A  ++   
Sbjct: 65  RFSSGDSELDLVLG-GGIVPGSLVLIGGSPGVGKSTLMMKLAGNIDKKVLYVAGEESPGQ 123

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           +  I A +LG+  K+L +      E  LE  +        D+++IDS+  +         
Sbjct: 124 IK-IRAERLGIKNKDLFLMPEIVVENILEEINKG-----YDLVIIDSIQTIYSENLQSAP 177

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
              S              +L      SK  +  I  + 
Sbjct: 178 GSVSQVREA-------TFELMRIAKESKTPVFIIGHIT 208


>gi|123967687|ref|YP_001008545.1| DNA repair protein RadA [Prochlorococcus marinus str. AS9601]
 gi|123197797|gb|ABM69438.1| putative DNA repair protein RadA [Prochlorococcus marinus str.
           AS9601]
          Length = 450

 Score = 39.8 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 80/228 (35%), Gaps = 27/228 (11%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + I   +SG    D  LG GG   G +V + G    GK+T+ L +  +         +V 
Sbjct: 62  KKISRFTSGFREFDRVLG-GGIVPGSVVLLGGEPGIGKSTIVLQSAGKI-SLNEKVLYVT 119

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           AE +L+ +  R   ++  ++        E  L +    ++       +IDS+ A+     
Sbjct: 120 AEESLEQVKIRWERLNQSSI--DLKIFAETNLSLIIEEIKRLNPSFAIIDSIQAIHNHEM 177

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
                  S     +  +         ++++   I + I     K G +        G   
Sbjct: 178 ESSPGSVSQVRACSSELQ--------NLAKDNNIALLIIGHVTKDGAL-------AGPKT 222

Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           L+      ++         +     +   ++ +KN+  S F+   F++
Sbjct: 223 LEHLVDTVINF--------EGDNISSHRLLRSIKNRFGSTFEIGIFEM 262


>gi|325114416|emb|CBZ49973.1| putative DNA repair protein recA [Neospora caninum Liverpool]
          Length = 519

 Score = 39.8 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           V+  G   +D  L  GG P+ R+VEI G    GKT  AL  +++
Sbjct: 96  VLPVGCRAVDEYLN-GGVPRSRVVEIAGKAGCGKTQFALSLVSE 138


>gi|312873912|ref|ZP_07733950.1| DNA repair protein RadA [Lactobacillus iners LEAF 2052A-d]
 gi|325912443|ref|ZP_08174838.1| DNA repair protein RadA [Lactobacillus iners UPII 143-D]
 gi|311090588|gb|EFQ48994.1| DNA repair protein RadA [Lactobacillus iners LEAF 2052A-d]
 gi|325475785|gb|EGC78956.1| DNA repair protein RadA [Lactobacillus iners UPII 143-D]
          Length = 459

 Score = 39.8 bits (91), Expect = 0.64,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 4/112 (3%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +++    L+  LG GG   G +V + G    GK+TL L  +     +     +V  E +
Sbjct: 74  RITTPFSELNRVLG-GGIVPGSLVLVGGDPGIGKSTLMLQIMGSIANS-HKVLYVSGEES 131

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
              I  R   + + +  +      E  +E     +     + +VIDS+  + 
Sbjct: 132 ASQIKLRAERLHISDTELL--LYSETNMENIREQIVDLKPEFLVIDSIQTMN 181


>gi|221135955|ref|XP_002171039.1| PREDICTED: similar to X-ray repair complementing defective repair
           in Chinese hamster cells 3, partial [Hydra
           magnipapillata]
          Length = 131

 Score = 39.8 bits (91), Expect = 0.64,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           +S+G   +D  L  GG     + EI G  +SGKT L L   
Sbjct: 79  LSTGCELVDQCL-HGGIIFPGVTEICGESASGKTQLCLQIC 118


>gi|198284521|ref|YP_002220842.1| DNA repair protein RadA [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666573|ref|YP_002427187.1| DNA repair protein RadA [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198249042|gb|ACH84635.1| DNA repair protein RadA [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518786|gb|ACK79372.1| DNA repair protein RadA [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 452

 Score = 39.8 bits (91), Expect = 0.64,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 54/142 (38%), Gaps = 6/142 (4%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +   ++G   LD  LG G  P G  + + G    GK+TL L T     +          
Sbjct: 65  DVGRSTTGLAELDRVLGGGQVP-GAAILLGGEPGIGKSTLLLQTAHHLAQVSKVLYVTGE 123

Query: 104 EHALD-SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           E A   ++ A++LG+    + +   +     LE  + L+R     ++++DS+  +     
Sbjct: 124 ESAAQVALRAQRLGLGRSPVRVVAENH----LEAIEGLLRGEQPALVLVDSIQTVYTDTL 179

Query: 163 IEGDMGESLPGMQARLMSQALR 184
                  +     A  + +  +
Sbjct: 180 QSAPGSVAQVRECAARLVRFAK 201


>gi|83645020|ref|YP_433455.1| hypothetical protein HCH_02202 [Hahella chejuensis KCTC 2396]
 gi|83633063|gb|ABC29030.1| conserved hypothetical protein [Hahella chejuensis KCTC 2396]
          Length = 226

 Score = 39.8 bits (91), Expect = 0.64,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 1/93 (1%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEI-YGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
            I+ + +G   L+ AL  GG+P   + EI Y     G+ +L    +A          +V 
Sbjct: 21  PIKGLDTGFPSLNQALADGGWPADGVTEIEYRSLGMGEVSLLFPALAPLSHQDQWILWVA 80

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
             + L +      G+ L N LI QP +    L 
Sbjct: 81  PPYPLYAPALINGGLSLYNNLIIQPQSRRDLLW 113


>gi|188579325|ref|YP_001922770.1| circadian clock protein, KaiC [Methylobacterium populi BJ001]
 gi|179342823|gb|ACB78235.1| putative circadian clock protein, KaiC [Methylobacterium populi
           BJ001]
          Length = 505

 Score = 39.8 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 55/162 (33%), Gaps = 22/162 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+G  GLD  L  GG    R+  + G   +GKTTLAL  +      G    +V     
Sbjct: 14  RISTGLRGLDEVL-CGGLTPDRLYLLEGTPGTGKTTLALQFLLAGAARGEGSLYVTLSET 72

Query: 107 LDSIYARKL--GVDLKNLLISQ-----------PDTGEQALEI--------TDMLVRSGA 145
            D + A     G  L  + + +             +     EI            V S  
Sbjct: 73  ADELRAAAASHGWSLDGVELYELVNEMGLDPDSEQSILHPSEIELGETVREVIARVESLK 132

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
            D +V DS++ L   A+        +  ++     ++   L 
Sbjct: 133 PDRVVFDSLSELRLLAQNPLRYRRQILALKQFFSRRSCTVLM 174


>gi|126459957|ref|YP_001056235.1| AAA ATPase [Pyrobaculum calidifontis JCM 11548]
 gi|126249678|gb|ABO08769.1| AAA ATPase [Pyrobaculum calidifontis JCM 11548]
          Length = 373

 Score = 39.8 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 51/164 (31%), Gaps = 9/164 (5%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
           +GG  KG    + GP  SGKTT+ L         G   A+VD            L  +  
Sbjct: 213 VGGVYKGAATAVVGPVGSGKTTIMLMAAKALMDRGKRVAYVDVGGG------GSLVAEKY 266

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            +     +     L  T   +     D + I  + A        G          A  +S
Sbjct: 267 GVETIDVELNVTHLVHTLRRLAGVGYDAVFIRGLDAFGSA---FGRDAFVQALRYATRVS 323

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           +    + +S+ R   + +  + +         S  +  G + + 
Sbjct: 324 RMGPAVVASLRRLYGMDILFDVVIRVGEDFVESVRSPIGRHRIS 367


>gi|14521687|ref|NP_127163.1| flagellar accessory protein FlaH [Pyrococcus abyssi GE5]
 gi|5458906|emb|CAB50393.1| flaH flagella-related protein H [Pyrococcus abyssi GE5]
          Length = 232

 Score = 39.8 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 1/84 (1%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           + E +  ++  S  L   LG GG P G I+ I G   +GK+ L+   +      G T ++
Sbjct: 1   MVEELLKITLKSDELHRRLG-GGIPAGTIMLIEGDRGTGKSILSQRLLYGFLMNGYTSSY 59

Query: 101 VDAEHALDSIYARKLGVDLKNLLI 124
           V +++       + + +    +  
Sbjct: 60  VSSQYTTVEYIKQMMSISYDVIPF 83


>gi|312144663|ref|YP_003996109.1| DnaB domain protein helicase domain protein [Halanaerobium sp.
           'sapolanicus']
 gi|311905314|gb|ADQ15755.1| DnaB domain protein helicase domain protein [Halanaerobium sp.
           'sapolanicus']
          Length = 462

 Score = 39.8 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 65/193 (33%), Gaps = 26/193 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + SG + LD    IGGF +G +  I    S GKT  A++      K     A +  E   
Sbjct: 188 LRSGFISLDNL--IGGFKRGHLNVIAASTSMGKTAFAINIAKNVLKRNAKVAIISLEMDA 245

Query: 108 DSIYARKL--GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP------ 159
             +  R +     +     +Q +T +Q  +     + +     ++I     L        
Sbjct: 246 TEVMDRMIIQEAQVNGWKYTQGETNDQEDKRISKALDNLHELPLMISDERGLNTAQIRAR 305

Query: 160 ----RAEIEG------------DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
               +A+++G             + +      AR + Q + +L +  S     ++ I+Q+
Sbjct: 306 LRKFKAQLDGIDLAVIDYLQMIQLPDEHAQNTARAVGQIVLQLRNLASELDIPVILISQI 365

Query: 204 RMKIGVMFGSPET 216
                        
Sbjct: 366 SRSFTSRTDKRPV 378


>gi|85703136|ref|ZP_01034240.1| DNA repair protein RadA [Roseovarius sp. 217]
 gi|85672064|gb|EAQ26921.1| DNA repair protein RadA [Roseovarius sp. 217]
          Length = 454

 Score = 39.8 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 60/180 (33%), Gaps = 11/180 (6%)

Query: 28  GK-GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           GK G  + L    +         SG   LD  LG G  P   ++ + G    GK+TL L 
Sbjct: 49  GKRGTPLTLTDLSTEEAPPPRTLSGIGELDRVLGGGLVPASAVL-VGGDPGIGKSTLLLQ 107

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
             AQ    G    ++  E A   +  R   + L N  +         L      + S   
Sbjct: 108 AAAQFAGAGLKTFYISGEEASAQVRMRAQRLGLGNAPVKLAAATS--LRDILTTLESEKP 165

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           D+++IDS+  +            S     A        +LTS   R    ++ +  +   
Sbjct: 166 DLVIIDSIQTVWSDTVEAAPGSVSQVRAAAH-------ELTSFAKRFGTSVILVGHVTKD 218


>gi|312136835|ref|YP_004004172.1| circadian clock protein, kaic [Methanothermus fervidus DSM 2088]
 gi|311224554|gb|ADP77410.1| putative circadian clock protein, KaiC [Methanothermus fervidus DSM
           2088]
          Length = 226

 Score = 39.8 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++ V  G  G++     G  P+G    +YGP  +GKT ++ H +    + G +   ++ E
Sbjct: 2   VDKVPIGIQGMNSLHEGGLIPRGTTTLLYGPPKTGKTLISWHFLYSGLEAGESGILINTE 61

Query: 105 H 105
            
Sbjct: 62  S 62


>gi|289192355|ref|YP_003458296.1| putative circadian clock protein, KaiC [Methanocaldococcus sp.
           FS406-22]
 gi|288938805|gb|ADC69560.1| putative circadian clock protein, KaiC [Methanocaldococcus sp.
           FS406-22]
          Length = 242

 Score = 39.8 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 85/256 (33%), Gaps = 60/256 (23%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ--KTGGTCAFVD 102
           ++ V +G  G+D  L  GG P+  +V + G   +GK+      + +        +     
Sbjct: 1   MKRVKTGIPGMDEIL-HGGIPERNVVLLSGGPGTGKSIFCQQFLYKGAVDYNEPSILVAL 59

Query: 103 AEHALD-SIYARKLGVDL-------------------------KNLLISQPDTGEQALEI 136
            EH +      R+ G D+                         +  +++ P+   + +++
Sbjct: 60  EEHPVQIRENMRQFGWDIRKLEEEGKFAIIDAFTYGIGSAAKREKYVVNDPNDERELIDV 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
               +       I IDSV  L     I   M          +  + +  L   IS   C 
Sbjct: 120 LKTAINDIGAKRIGIDSVTTLY----INKPM----------MARRTVFLLKRVISGLGCT 165

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYS--SVRLDIRRVGSIKDKDSITGNQTRVKV 254
            +F +Q+ +         E   GG  ++      +RLD+       D+      ++ +  
Sbjct: 166 AIFTSQISV--------GERGFGGPGVEHAVDGIIRLDL-------DEIDGELKRSLIVW 210

Query: 255 VKNKMASPFKQVEFDI 270
                +   K+  FDI
Sbjct: 211 KMRGTSHSLKRHPFDI 226


>gi|154150886|ref|YP_001404504.1| flagellar accessory protein FlaH [Candidatus Methanoregula boonei
           6A8]
 gi|153999438|gb|ABS55861.1| putative flagellar protein FlaH [Methanoregula boonei 6A8]
          Length = 244

 Score = 39.8 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 1/78 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E  +++S+G+  LD  +   G P G +  I G   +GK+ L    +  + K G +     
Sbjct: 12  EDRQIISTGNNELDKKIAD-GLPVGSLTLIEGENDTGKSVLTQQIVWGAMKQGMSVDLFT 70

Query: 103 AEHALDSIYARKLGVDLK 120
            E+   S   +   + L 
Sbjct: 71  TENTSKSFIKQMESMSLD 88


>gi|311280236|ref|YP_003942467.1| general secretory pathway protein E [Enterobacter cloacae SCF1]
 gi|308749431|gb|ADO49183.1| general secretory pathway protein E [Enterobacter cloacae SCF1]
          Length = 492

 Score = 39.8 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            KA++  +S I   YG+  +M+L  + ++   I+ +      L    G+   P G I+ +
Sbjct: 189 RKAIDVRVSTIPSQYGERVVMRLLDKSNLRPDIDKLGLIDEELAQLKGLIARPHG-IILV 247

Query: 73  YGPESSGKTT 82
            GP  SGK+T
Sbjct: 248 TGPTGSGKST 257


>gi|218281866|ref|ZP_03488205.1| hypothetical protein EUBIFOR_00773 [Eubacterium biforme DSM 3989]
 gi|218217155|gb|EEC90693.1| hypothetical protein EUBIFOR_00773 [Eubacterium biforme DSM 3989]
 gi|291540554|emb|CBL13665.1| KaiC [Roseburia intestinalis XB6B4]
 gi|295110770|emb|CBL24723.1| KaiC. [Ruminococcus obeum A2-162]
          Length = 638

 Score = 39.8 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 73/232 (31%), Gaps = 15/232 (6%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKLGVDLKN 121
            P G++  I G    GKT  A+   A            + E    +       +G  +K 
Sbjct: 329 LPFGKLTIIQGNPGEGKTYFAMMLTAACTNRKTFPNMEEIEPFNVIYQTAEDGMGDTIKP 388

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD----MGESLPGMQAR 177
            L+       + + I D        D  +  ++     R  I       +G  +   +A 
Sbjct: 389 RLVEAGADLSRVMVIDDTEEALTLSDDRIEKAIRQNQVRLLIIDPVQAFIGADVDMNRAN 448

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
            +    RKL     ++ C +V I  +    G          G  ++   ++VR  +    
Sbjct: 449 EVRPVFRKLGMIAEKTGCAIVLIGHLNKSSGTQSTYR----GLGSIDIMAAVRSLLFIGK 504

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
             KD  +       +   K+ +A P + + F +   EG  + G         
Sbjct: 505 VKKDPTTRV-----LIHEKSSLAPPGETMAFKLGDEEGFRWVGAYEISADDL 551


>gi|282164800|ref|YP_003357185.1| KaiC homolog [Methanocella paludicola SANAE]
 gi|282157114|dbj|BAI62202.1| KaiC homolog [Methanocella paludicola SANAE]
          Length = 566

 Score = 39.8 bits (91), Expect = 0.68,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 35 LGSQGSIFEGIEV--VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
          +  + S  + +E+    +G  G D  +  GG P+GR   + G   SGKT  A+  I    
Sbjct: 1  MARERSSTKKVELPKAPTGISGFDD-ITYGGLPRGRPTLVAGGAGSGKTMFAMEFIVHGA 59

Query: 93 KT 94
            
Sbjct: 60 ME 61


>gi|225017890|ref|ZP_03707082.1| hypothetical protein CLOSTMETH_01824 [Clostridium methylpentosum
           DSM 5476]
 gi|224949402|gb|EEG30611.1| hypothetical protein CLOSTMETH_01824 [Clostridium methylpentosum
           DSM 5476]
          Length = 635

 Score = 39.8 bits (91), Expect = 0.68,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 3/95 (3%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
               + +G   LD  L  GG  +G    I    S GKTT A+    Q  + G        
Sbjct: 344 DTPCIPTGFPKLDEML-DGGLYEGLYC-IGAITSLGKTTFAMQLADQVARAGKDVVIFSL 401

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           E A   + A+ +   L       P   + A  ITD
Sbjct: 402 EMARSELMAKSVS-RLTLFHAEHPRDAKTARGITD 435


>gi|148269684|ref|YP_001244144.1| hypothetical protein Tpet_0547 [Thermotoga petrophila RKU-1]
 gi|170288360|ref|YP_001738598.1| putative circadian clock protein, KaiC [Thermotoga sp. RQ2]
 gi|281411605|ref|YP_003345684.1| putative circadian clock protein, KaiC [Thermotoga naphthophila
           RKU-10]
 gi|147735228|gb|ABQ46568.1| putative circadian clock protein, KaiC [Thermotoga petrophila
           RKU-1]
 gi|170175863|gb|ACB08915.1| putative circadian clock protein, KaiC [Thermotoga sp. RQ2]
 gi|281372708|gb|ADA66270.1| putative circadian clock protein, KaiC [Thermotoga naphthophila
           RKU-10]
          Length = 242

 Score = 39.8 bits (91), Expect = 0.68,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 3/80 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+ V +G  G+D  L  GG P+  IV I G   +GKT  +   I    + G    +V  E
Sbjct: 2   IKKVKTGIPGMDEIL-HGGIPERNIVLISGGPGTGKTIFSQQFIWNGLQMGEPGIYVALE 60

Query: 105 --HALDSIYARKLGVDLKNL 122
                        G ++   
Sbjct: 61  EHPVQVKKNMEVFGWNVDPF 80


>gi|57506103|ref|ZP_00372025.1| hypothetical protein CUP0976 [Campylobacter upsaliensis RM3195]
 gi|57015587|gb|EAL52379.1| hypothetical protein CUP0976 [Campylobacter upsaliensis RM3195]
          Length = 395

 Score = 39.8 bits (91), Expect = 0.68,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 85/249 (34%), Gaps = 25/249 (10%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + SG   LD AL  GGF   ++V I G    GKT+L L  I    +     AF   E  +
Sbjct: 145 IKSGVSFLDQAL-DGGFEMAQLVLISGDPEMGKTSLCLQVIENISRL-HKVAFFCFEFTI 202

Query: 108 ---DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
                        + +NL+I         +E    ++    V +  IDS   +      E
Sbjct: 203 WDYIKKRQNHTHFNKENLIILNEGYNIFEMENNIRILAKKGVKVFFIDS--QMRVENNNE 260

Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224
           G+  E    M+  ++++   KL   I              M +       E   G     
Sbjct: 261 GNNPEERETMKFSVLAKLCHKLDILIL-------------MVVQTSKSDTENPLGSKRAS 307

Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRV----KVVKNKMASPFKQVEFDIMYGEGISFFG 280
             +S+ + + +V   K+  S   N+       K +  K     K    ++ + +    F 
Sbjct: 308 HEASIIMRLEKVECDKNDLSHK-NKAFHPQKRKFIMQKNKQTGKHFVEEVGFKQANQSFY 366

Query: 281 ELIDLGVKA 289
            L D G K 
Sbjct: 367 SLYDEGKKM 375


>gi|126465524|ref|YP_001040633.1| AAA ATPase [Staphylothermus marinus F1]
 gi|126014347|gb|ABN69725.1| AAA ATPase [Staphylothermus marinus F1]
          Length = 214

 Score = 39.8 bits (91), Expect = 0.68,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 6/114 (5%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFVDAE 104
           + + +G+ GLD  +G       R V  +G   SGKTTL L   +         C ++  E
Sbjct: 4   KTIVTGNPGLDRVIGE-----SRSVLFFGEAGSGKTTLLLTIASNICIDKNDPCLYISTE 58

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
             L      +      N+  ++    ++  +     +       + IDS+ +L 
Sbjct: 59  ETLHYDRVARSPEKYANVFFTEIYDFDELFDFIVFKLPILKFRRVFIDSINSLY 112


>gi|154175295|ref|YP_001409095.1| type II secretion system protein [Campylobacter curvus 525.92]
 gi|153793208|gb|EAU00314.2| type II secretion system protein [Campylobacter curvus 525.92]
          Length = 284

 Score = 39.8 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 76/219 (34%), Gaps = 14/219 (6%)

Query: 9   IVDKSKALEAAL-----SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           + DK  A++  L     ++I   +    + +   +    + +    +G   LD  L   G
Sbjct: 16  LEDKRAAIDETLRDLKSTRIDEKF--ETMGEFVRRVEASDELVYFPTGLDWLDGELYYRG 73

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
             +G  + I G   +GKTT  +  +    K+    AF   E     +  +      + L 
Sbjct: 74  LAQGSFINIAGASYAGKTTFTIELLKGLAKS-HKVAFFSYEMYEKVLIRKFKFAPFEILK 132

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
                     ++I    +R  +   ++   V A+  R ++     +     +   +S  L
Sbjct: 133 NMTIIQDSPNIDIVCERIRKLSQAGVM---VFAIDSRMKLRVSNTKLSEYEKNNEISSKL 189

Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222
            +LT ++     +++ INQ+              +G   
Sbjct: 190 SELTRTL---GIVIILINQISEADLKAGRQALKGSGDQV 225


>gi|119714734|ref|YP_921699.1| DNA repair protein RadA [Nocardioides sp. JS614]
 gi|119535395|gb|ABL80012.1| DNA repair protein RadA [Nocardioides sp. JS614]
          Length = 472

 Score = 39.8 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 48/143 (33%), Gaps = 3/143 (2%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E     +SG   LD  LG GG   G  + + G    GK+TL L   AQ+ +      +V
Sbjct: 62  VEDSRFRTSGVPELDRVLG-GGLVPGAAILLAGEPGVGKSTLLLEVAAQTARYQRRTLYV 120

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
             E +   +  R        +        E  L      +      ++V+DS+  +    
Sbjct: 121 TGEESASQVRLRA--DRTGGVHDELYLAAETDLGAVLTHIEEVRPTLLVVDSIQTIGAAG 178

Query: 162 EIEGDMGESLPGMQARLMSQALR 184
                 G +     A  + +  +
Sbjct: 179 VDGVPGGVTQVKEVAAALVRVAK 201


>gi|71415030|ref|XP_809595.1| DNA repair protein [Trypanosoma cruzi strain CL Brener]
 gi|70874003|gb|EAN87744.1| DNA repair protein, putative [Trypanosoma cruzi]
          Length = 400

 Score = 39.8 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           +S+G   LD AL  GG   G I EI G   +GKT  AL+  
Sbjct: 118 ISTGQECLDGAL-RGGLGCGLITEITGATGAGKTAFALNLA 157


>gi|71409752|ref|XP_807204.1| DNA repair protein [Trypanosoma cruzi strain CL Brener]
 gi|70871155|gb|EAN85353.1| DNA repair protein, putative [Trypanosoma cruzi]
          Length = 400

 Score = 39.8 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           +S+G   LD AL  GG   G I EI G   +GKT  AL+  
Sbjct: 118 ISTGQECLDGAL-RGGLGCGLITEITGATGAGKTAFALNLA 157


>gi|290769897|gb|ADD61668.1| putative protein [uncultured organism]
          Length = 422

 Score = 39.8 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 58/213 (27%), Gaps = 15/213 (7%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAFVDAEHALD---SIYAR 113
            P+G I  + G    GKTTLAL   +             G   +   E+           
Sbjct: 113 LPRGMITILAGHAGQGKTTLALWLASHVSNGDLMPGGKPGNVYYFTTENDESIVLRPRLE 172

Query: 114 KLGVDLKNLLISQPDTGEQALEITD----MLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
            +   L  +++ + D  +  L          +  G  D+IV D V +   +        +
Sbjct: 173 AMDARLDRVMVMRSDARQLTLTDPRLFEMHKIFDGKPDLIVFDPVQSYVGKKLDMNRTDD 232

Query: 170 S-LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
                     +  A       I  +K   +  N    ++                     
Sbjct: 233 VRFMMDNLNKLLHATNAAVVLICHTKKAPMGFNGRPCELINGSSDFVNAARSVCFLGRDP 292

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261
            R D+  V   K+   + G      + ++    
Sbjct: 293 ARPDVCVVAQEKNSLGLPGASLAFTIGEDGAVH 325


>gi|323529367|ref|YP_004231519.1| putative circadian clock protein, KaiC [Burkholderia sp. CCGE1001]
 gi|323386369|gb|ADX58459.1| putative circadian clock protein, KaiC [Burkholderia sp. CCGE1001]
          Length = 503

 Score = 39.8 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 3/88 (3%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
                  + + SG  G+D  LG GGF   R+  + G   +GKTTLAL  + +  + G T 
Sbjct: 2   SKANHTTDRLRSGIDGIDDVLG-GGFTPHRMYLVEGAPGTGKTTLALQFLLKGVEEGQTG 60

Query: 99  AFVDAEHALDSIYARKL--GVDLKNLLI 124
            ++        + +     G DL    I
Sbjct: 61  LYITLSETRSELISVADSHGWDLSQFHI 88


>gi|304315909|ref|YP_003851054.1| DNA repair protein RadA [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777411|gb|ADL67970.1| DNA repair protein RadA [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 448

 Score = 39.8 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 75/236 (31%), Gaps = 17/236 (7%)

Query: 35  LGSQGSIFEGIEV-----VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           L S+  + + +E      + +G    D  LG GG  +G +V I G    GK+T+ L    
Sbjct: 50  LTSKVELLKDVEAKDEDRIKTGIGEFDRVLG-GGIVQGSLVLIGGEPGIGKSTMLLQVSD 108

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
                         E +          +  K  +    +T    +E     +   +   +
Sbjct: 109 IMSNFTKVLYVSGEESSRQIKLRADRIIGGKQDIYFLAETNINNVE---KHIEKISPGFM 165

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209
           +IDS+  +            S      + + +        +++   I  FI     K G 
Sbjct: 166 IIDSIQTMYAEESTTIPGSVSQVRQVTQHLMR--------LAKQNGITTFIIGHVTKEGS 217

Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265
           + G        + + ++   R    R+         + N+  V  ++++     K 
Sbjct: 218 IAGPRVLEHMVDTVLYFEGDRTQSFRILRAYKNRFGSTNEIGVFEMESQGLKEVKN 273


>gi|281704338|gb|ADA77114.1| disrupted meiotic cDNA 1 [Critesion californicum]
          Length = 115

 Score = 39.8 bits (91), Expect = 0.71,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 6/103 (5%)

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
               +      ++++DSV AL          G      + + ++Q L +LT         
Sbjct: 12  LAAKMAEEPFRLLIMDSVIALFR----VDFSGRGELAERQQKLAQMLSRLTKIAEEFNVA 67

Query: 197 LVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVG 237
           +   NQ+    G       P+   GG+ L   +++RL +R+  
Sbjct: 68  VYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLRKGK 110


>gi|86749509|ref|YP_486005.1| chromosome partitioning protein ParA [Rhodopseudomonas palustris
           HaA2]
 gi|86572537|gb|ABD07094.1| chromosome partitioning protein ParA [Rhodopseudomonas palustris
           HaA2]
          Length = 307

 Score = 39.8 bits (91), Expect = 0.71,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 57/187 (30%), Gaps = 11/187 (5%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
            SGK+TLALH +    K G   A +D +        + L   + N   S        LE+
Sbjct: 24  GSGKSTLALHIVVALLKAGQRVATIDLDC-----RQQSLTRSIDNRR-SWARHTGLELEL 77

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS-RSKC 195
                      + + D+ +A   +        E            A   L       +  
Sbjct: 78  PQHCCIRLGETMHIADNESAEFAQFADAVAAVELTHDFIVIDTPGADSYLMRLAHSMADT 137

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS----ITGNQTR 251
           ++  IN   +   V+      T        Y+S+ LD RR     D       +  N+  
Sbjct: 138 LVTPINDSFLDFDVLGCVDPATFSVTGPGHYASMVLDARRRRRQLDGVDTDWIVVRNRLS 197

Query: 252 VKVVKNK 258
               +N 
Sbjct: 198 TMGSRNN 204


>gi|327542029|gb|EGF28527.1| hypothetical protein RBWH47_04194 [Rhodopirellula baltica WH47]
          Length = 295

 Score = 39.8 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
          + + +G   LD  LG GG   G +  + G    GKT L +      Q   G
Sbjct: 3  QRLQTGITTLDEMLG-GGLLPGTMTVVLGATGIGKTQLGIQFAKHGQTQEG 52


>gi|87199554|ref|YP_496811.1| hypothetical protein Saro_1536 [Novosphingobium aromaticivorans DSM
           12444]
 gi|87135235|gb|ABD25977.1| conserved hypothetical protein [Novosphingobium aromaticivorans DSM
           12444]
          Length = 253

 Score = 39.8 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPES---SGKTTLALHTIAQSQKTGGTCAFV 101
             G   LD ALG GG  +GRI E+Y  E    +     A+         G T  ++
Sbjct: 21  PFGIASLDAALG-GGLARGRIHEVYAAEGDDLASAAGFAVGVATCMTHPGKTVLWL 75


>gi|327294681|ref|XP_003232036.1| hypothetical protein TERG_07653 [Trichophyton rubrum CBS 118892]
 gi|326465981|gb|EGD91434.1| hypothetical protein TERG_07653 [Trichophyton rubrum CBS 118892]
          Length = 601

 Score = 39.8 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 6/95 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-----GTCAFVD 102
           +S+    LD AL  GG   G + E+ G   +GKT   LH +   Q            ++ 
Sbjct: 120 ISTLDPILDSALS-GGISTGYLTEVTGESGAGKTQFLLHLLLSVQLPAPHGLSKNALYMS 178

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
            E  L +    +L  + + L    P+T   +L+  
Sbjct: 179 TESDLATNRLSQLINEHRTLQALHPETPRPSLDNI 213


>gi|189485189|ref|YP_001956130.1| DNA repair protein RadA homolog [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170287148|dbj|BAG13669.1| DNA repair protein RadA homolog [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 455

 Score = 39.8 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 8/111 (7%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +     D  +G GG   G ++ + G    GK+TL LH        G T  ++  E +L  
Sbjct: 74  TAIKEFDNMIG-GGIVPGSLILLGGAPGIGKSTLMLHISDSLSDRG-TVLYISGEESLSQ 131

Query: 110 I--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           +   A +L V   N+ ++        L+     V       +VIDS+    
Sbjct: 132 VKARAERLKVKKDNIFLASETN----LKNIIDAVNKIDPKFLVIDSIQTTY 178


>gi|169236532|ref|YP_001689732.1| hypothetical protein OE3669R [Halobacterium salinarum R1]
 gi|167727598|emb|CAP14386.1| conserved hypothetical protein [Halobacterium salinarum R1]
          Length = 358

 Score = 39.8 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 1/83 (1%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
                   I  ++ G  GLD  +  GG P+  ++   G   +GKTT  L  + ++   G 
Sbjct: 120 EDPEFDSDIPRINVGIEGLDEMV-QGGVPERSLLVAVGEAGTGKTTFGLQFLHEALSNGE 178

Query: 97  TCAFVDAEHALDSIYARKLGVDL 119
              F+  E +   +         
Sbjct: 179 RAVFITLEESRGRVIQSADEKGW 201


>gi|311112366|ref|YP_003983588.1| DNA repair protein RadA [Rothia dentocariosa ATCC 17931]
 gi|310943860|gb|ADP40154.1| DNA repair protein RadA [Rothia dentocariosa ATCC 17931]
          Length = 475

 Score = 39.8 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 56/169 (33%), Gaps = 25/169 (14%)

Query: 30  GAIMQLGSQGSIFEGIEVV-----------SSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           G + +  +  S+ +  +V+           S+G+   D  LG GG   G ++ + G    
Sbjct: 45  GTVARTRAASSVQKPAQVIGEVDSTVAAYMSTGNPEFDRVLG-GGLVPGAVILMAGEPGV 103

Query: 79  GKTTLALHTI---------AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD- 128
           GK+TL L                         D  +      A ++ +    +       
Sbjct: 104 GKSTLLLDVAATFARGYTPRTPAAERARAKTRDVLYVTGEESAAQVKLRADRIHAVADTL 163

Query: 129 --TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
             T E  L      +      ++VIDSV  L   A++EG  G      +
Sbjct: 164 YLTSETDLGTALAHIEQVDPAMLVIDSVQTLAS-ADVEGSAGGVTQVRE 211


>gi|257457164|ref|ZP_05622340.1| DNA repair protein RadA [Treponema vincentii ATCC 35580]
 gi|257445423|gb|EEV20490.1| DNA repair protein RadA [Treponema vincentii ATCC 35580]
          Length = 464

 Score = 39.8 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 10/118 (8%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
               +++G    D  LG G   +  ++ I G    GK+TL +         G    +V  
Sbjct: 74  DTARITTGISEFDRVLGGGAVKRSAVL-IGGEPGIGKSTLLMQAA---AAAGQRTLYVSG 129

Query: 104 EHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           E +   I  R  +LGV LKN+ +   ++     E  + ++ +    +++IDSV  L  
Sbjct: 130 EESAGQIRGRADRLGVPLKNIELLCTNSV----ENIEKVLNNINPLVVIIDSVQTLFS 183


>gi|226323336|ref|ZP_03798854.1| hypothetical protein COPCOM_01110 [Coprococcus comes ATCC 27758]
 gi|225208020|gb|EEG90374.1| hypothetical protein COPCOM_01110 [Coprococcus comes ATCC 27758]
          Length = 154

 Score = 39.8 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           E  E V++    LD  LG GG   G ++ + G    GK+TL L    +  K 
Sbjct: 64  ENEERVTTEIKELDRVLG-GGIVPGSLILVGGDPGIGKSTLLLQVCQKLAKK 114


>gi|330985359|gb|EGH83462.1| hypothetical protein PLA107_10063 [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 207

 Score = 39.8 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 11/137 (8%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI-Y 73
           +LEA L   +R   KG       +      +    SG   LD AL  GG+P   + EI  
Sbjct: 7   SLEALLD--ERRVWKG-------RQQGAPQVSPHPSGHALLDSALPTGGWPAAALTEILI 57

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
               SG+  L   ++A+    G     +   +          GVDL+ L++ Q    + A
Sbjct: 58  PANGSGELRLLWPSLARLSAIGERIVLIAPPYIPYPQAWLAAGVDLRQLVVIQAGPRD-A 116

Query: 134 LEITDMLVRSGAVDIIV 150
           L   +  +RSG+   +V
Sbjct: 117 LWAAEQCLRSGSCGAVV 133


>gi|167764503|ref|ZP_02436624.1| hypothetical protein BACSTE_02892 [Bacteroides stercoris ATCC
           43183]
 gi|167697172|gb|EDS13751.1| hypothetical protein BACSTE_02892 [Bacteroides stercoris ATCC
           43183]
          Length = 461

 Score = 39.8 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
           G   +  +GI  + +G   LD      G+ +G +  I    S GKT  ALH    + + G
Sbjct: 172 GRVANNRDGITGIPTGLRDLDRL--TAGWQRGDLHIIAARPSVGKTAFALHLALVAGRAG 229

Query: 96  GTCAFVDAE 104
                   E
Sbjct: 230 KQVLVNSLE 238


>gi|32475490|ref|NP_868484.1| hypothetical protein RB8677 [Rhodopirellula baltica SH 1]
 gi|32446032|emb|CAD75861.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
          Length = 295

 Score = 39.8 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 48/146 (32%), Gaps = 8/146 (5%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFVDAE 104
           + + +G   LD  LG GG   G +  + G    GKT L +      Q + G      D  
Sbjct: 3   QRLQTGITTLDEMLG-GGLLPGTMTVVLGATGIGKTQLGIQFAKHGQTQEGERGVVFDLT 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
              DS    +    L    +S+    +Q + + ++  R              L   +   
Sbjct: 62  SRGDSQNHSEYAKRLGEWQLSEAA-ADQPVTLNEVWDREKTRR-----DSMHLFQDSGRR 115

Query: 165 GDMGESLPGMQARLMSQALRKLTSSI 190
               +       R  S+  +KL  +I
Sbjct: 116 VTSSDMDADDWRRWSSERAKKLDRAI 141


>gi|9507536|ref|NP_052543.1| ATP-binding protein [Plasmid ColIb-P9]
 gi|32470257|ref|NP_863481.1| nucleotide-binding protein [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|83404880|ref|YP_424895.1| hypothetical protein pCoo115 [Escherichia coli]
 gi|168758371|ref|ZP_02783378.1| ATP-binding protein [Escherichia coli O157:H7 str. EC4401]
 gi|168770670|ref|ZP_02795677.1| ATP-binding protein [Escherichia coli O157:H7 str. EC4486]
 gi|194447012|ref|YP_002039158.1| ATP-binding protein [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194447225|ref|YP_002043949.1| ATP-binding protein [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|195940168|ref|ZP_03085550.1| ATP-binding protein [Escherichia coli O157:H7 str. EC4024]
 gi|299836181|ref|YP_003717750.1| putative PilQ nucleotide-binding protein [Escherichia coli ETEC
           1392/75]
 gi|300819639|ref|ZP_07099831.1| type II/IV secretion system protein [Escherichia coli MS 107-1]
 gi|300907593|ref|ZP_07125228.1| type II/IV secretion system protein [Escherichia coli MS 84-1]
 gi|301306613|ref|ZP_07212674.1| type II/IV secretion system protein [Escherichia coli MS 124-1]
 gi|4512533|dbj|BAA75182.1| ATP-binding protein [Plasmid ColIb-P9]
 gi|4903092|dbj|BAA77977.1| nucleotide-binding protein [Plasmid R64]
 gi|20521625|dbj|BAB91689.1| PilQ type IV pilus ATPase [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|46949075|gb|AAT07429.1| PilQ [Escherichia coli]
 gi|70610251|gb|AAZ05398.1| ATP-binding protein [Salmonella enterica]
 gi|83308606|emb|CAI79599.1| nucleotide-binding protein [Escherichia coli]
 gi|85813730|emb|CAJ65891.1| ATP-binding protein [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|189354778|gb|EDU73197.1| ATP-binding protein [Escherichia coli O157:H7 str. EC4401]
 gi|189360476|gb|EDU78895.1| ATP-binding protein [Escherichia coli O157:H7 str. EC4486]
 gi|194358456|gb|ACF56900.1| ATP-binding protein [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194405529|gb|ACF65750.1| ATP-binding protein [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|297374530|emb|CBL93613.1| putative PilQ nucleotide-binding protein [Escherichia coli ETEC
           1392/75]
 gi|300400661|gb|EFJ84199.1| type II/IV secretion system protein [Escherichia coli MS 84-1]
 gi|300527806|gb|EFK48868.1| type II/IV secretion system protein [Escherichia coli MS 107-1]
 gi|300838174|gb|EFK65934.1| type II/IV secretion system protein [Escherichia coli MS 124-1]
 gi|315252984|gb|EFU32952.1| type II/IV secretion system protein [Escherichia coli MS 85-1]
 gi|315295828|gb|EFU55145.1| type II/IV secretion system protein [Escherichia coli MS 16-3]
 gi|321271464|gb|ADW79554.1| IncI1 conjugal transfer protein PilQ [Escherichia coli]
 gi|321271658|gb|ADW79746.1| IncI1 conjugal transfer protein PilQ [Salmonella enterica subsp.
           enterica serovar Kentucky]
 gi|323133136|gb|ADX20564.1| ATP-binding protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323959235|gb|EGB54899.1| type II/IV secretion system protein [Escherichia coli H489]
 gi|330907919|gb|EGH36442.1| incI1 plasmid conjugative transfer ATPase PilQ [Escherichia coli
           AA86]
          Length = 517

 Score = 39.4 bits (90), Expect = 0.76,   Method: Composition-based stats.
 Identities = 62/347 (17%), Positives = 120/347 (34%), Gaps = 48/347 (13%)

Query: 31  AIMQL----GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           A+M+L    G +   F+ +  +      L+I L     P+G+IV + GP  SGK+T    
Sbjct: 189 AVMRLIPDDGDKVPTFKQLGFIPEQIRLLNIMLR---RPEGKIV-LSGPTGSGKSTTLRS 244

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
                         +  E     +  + LG     ++  + D     L  +         
Sbjct: 245 ACRVYLDDNQGRHLLTIED---PLEGQILGATQTPIICDKSDEDAVKLAWSRA------- 294

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
               I S   L P A +EG+M + +  M     +Q    + +++  +  + +       +
Sbjct: 295 ----ISSAMRLDPDAIMEGEMRDLISMMSTTYAAQTGHIVLTTLHTNSALGI-----PER 345

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLD-----IRRVGSIKDKDSITGNQTRV---KVVKNK 258
           +  M  + +       L    S RL        R+   K    ++ ++         K+ 
Sbjct: 346 MITMGMNADLICDAQLLIGMISQRLVPTLCPSCRIPWEKRAPELSDDERDYLERHCNKDS 405

Query: 259 MASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF------KGQRLGQ---- 308
           + S    + F   +G        +I+ G K   + K     +          RL Q    
Sbjct: 406 LCSTD-NIWFRNHHGCSECNHDVIIN-GRKRGEIGKGLTGRTVIAEVIEPDNRLFQILKT 463

Query: 309 -GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
            G+  ++ +  EN++    +E LLR+    + D L  +  I   +D 
Sbjct: 464 RGKVAARKYWLENMKGISRVEHLLRRINEGLVDPLEADRIIPLDEDE 510


>gi|42520718|ref|NP_966633.1| DNA repair protein RadA [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410458|gb|AAS14567.1| DNA repair protein RadA [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 450

 Score = 39.4 bits (90), Expect = 0.77,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 3/110 (2%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQKTGGTCAFVDAEHALD 108
           +G   LD   G GG  +G  + I G    GK+TL L   A   Q +   C +V  E +L+
Sbjct: 68  TGIEELDRVFG-GGIVQGASILIGGEPGIGKSTLLLRIAANVVQLSSFECLYVSGEESLE 126

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
            +  R   + +    I    +     ++   +  + ++  +VIDS+  + 
Sbjct: 127 QVSLRAKRLKINEPKIKL-LSTVSLTDVVATIKENKSIKFLVIDSIQTMY 175


>gi|281704372|gb|ADA77131.1| disrupted meiotic cDNA 1 [Bromus fasciculatus]
          Length = 115

 Score = 39.4 bits (90), Expect = 0.77,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 6/103 (5%)

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
               +      ++++DSV AL          G      + + ++Q L +LT         
Sbjct: 12  LAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAERQQKLAQMLSRLTKIAEEFNVA 67

Query: 197 LVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVG 237
           +   NQ+    G       P+   GG+ L   +++RL +R+  
Sbjct: 68  VYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLRKGK 110


>gi|116629008|ref|YP_814180.1| DNA repair protein RadA [Lactobacillus gasseri ATCC 33323]
 gi|116094590|gb|ABJ59742.1| DNA replication and repair protein RadA [Lactobacillus gasseri ATCC
           33323]
          Length = 459

 Score = 39.4 bits (90), Expect = 0.77,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 48/145 (33%), Gaps = 10/145 (6%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E  + + +    L+  LG GG   G +V I G    GK+TL L        TG       
Sbjct: 70  EKEKRIVTPFEELNRVLG-GGIVPGSLVLIGGDPGIGKSTLMLQI------TGALAKEHS 122

Query: 103 AEHALDSIYARKLGVDLKNLLISQPD---TGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             +      A ++ +    L +S        E  ++     +     D +VIDS+  +  
Sbjct: 123 VLYVSGEESASQIKMRADRLGVSNSGILLYPETNMQNIREQIDEIKPDFLVIDSIQTMNE 182

Query: 160 RAEIEGDMGESLPGMQARLMSQALR 184
            +        S        + +  +
Sbjct: 183 PSLDSMVGSASQVREVTSELMKIAK 207


>gi|302537469|ref|ZP_07289811.1| lipoprotein releasing system, ATP-binding protein [Streptomyces sp.
           C]
 gi|302446364|gb|EFL18180.1| lipoprotein releasing system, ATP-binding protein [Streptomyces sp.
           C]
          Length = 274

 Score = 39.4 bits (90), Expect = 0.78,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 45/137 (32%), Gaps = 30/137 (21%)

Query: 26  VYGKG-AIMQLGSQGSIFEGIEVVSSGSLGLDIAL----------GIG---------GFP 65
            +GK  + M+  +     +     S+GS G  + L          G G         G  
Sbjct: 8   THGKDWSRMRTQTNSLRGQS----STGSPGFALRLDGVVKEYGKSGRGVRALDGVSVGIE 63

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA------LDSIYARKLGVDL 119
           +G    + GP  SGK+T         + + G     D E        L  +   ++G   
Sbjct: 64  RGSFTAVMGPSGSGKSTFLHCAAGLDKPSSGKAFIGDTELGGMNETQLTKLRRERIGFVF 123

Query: 120 KNLLISQPDTGEQALEI 136
           +   +    +  Q +E+
Sbjct: 124 QAFNLIPALSVRQNVEL 140


>gi|209922064|ref|YP_002296137.1| ATP-binding protein PilQ [Escherichia coli SE11]
 gi|209915242|dbj|BAG80315.1| ATP-binding protein PilQ [Escherichia coli SE11]
          Length = 517

 Score = 39.4 bits (90), Expect = 0.78,   Method: Composition-based stats.
 Identities = 62/347 (17%), Positives = 120/347 (34%), Gaps = 48/347 (13%)

Query: 31  AIMQL----GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           A+M+L    G +   F+ +  +      L+I L     P+G+IV + GP  SGK+T    
Sbjct: 189 AVMRLIPDDGDKVPTFKQLGFIPEQIRLLNIMLR---RPEGKIV-LSGPTGSGKSTTLRS 244

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
                         +  E     +  + LG     ++  + D     L  +         
Sbjct: 245 ACRVYLDDNQGRHLLTIED---PLEGQILGATQTPIICDKSDEDAVKLAWSRA------- 294

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
               I S   L P A +EG+M + +  M     +Q    + +++  +  + +       +
Sbjct: 295 ----ISSAMRLDPDAIMEGEMRDLISMMSTTYAAQTGHIVLTTLHTNSALGI-----PER 345

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLD-----IRRVGSIKDKDSITGNQTRV---KVVKNK 258
           +  M  + +       L    S RL        R+   K    ++ ++         K+ 
Sbjct: 346 MITMGMNADLICDAQLLIGMISQRLVPTLCPSCRIPWEKRAPELSDDERDYLERHCNKDS 405

Query: 259 MASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF------KGQRLGQ---- 308
           + S    + F   +G        +I+ G K   + K     +          RL Q    
Sbjct: 406 LCSTD-NIWFRNHHGCSECNHDVIIN-GRKRGEIGKGLTGRTVIAEVIEPDNRLFQILKT 463

Query: 309 -GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
            G+  ++ +  EN++    +E LLR+    + D L  +  I   +D 
Sbjct: 464 RGKVAARKYWLENMKGISRVEHLLRRINEGLVDPLEADRIIPLDEDE 510


>gi|325959084|ref|YP_004290550.1| hypothetical protein Metbo_1337 [Methanobacterium sp. AL-21]
 gi|325330516|gb|ADZ09578.1| hypothetical protein Metbo_1337 [Methanobacterium sp. AL-21]
          Length = 234

 Score = 39.4 bits (90), Expect = 0.79,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 73/224 (32%), Gaps = 20/224 (8%)

Query: 45  IEVVSSGSLGLDIALGI----GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           I  + SG  G D         GG P+     +YGP  +GK+  +             C +
Sbjct: 2   IACIESGIPGFDELTRTDSFMGGIPENSSTLVYGPPKTGKSIFSDQFCFNGLVNEEPCLY 61

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII-VIDSVAALTP 159
           +     L     + L  D+ +  +S     ++ +    + +     DI+           
Sbjct: 62  ITTNKGL-----KMLKSDMNDYNLSV----DEYMMNGSLHIIDTISDILEKKVEPTGTVV 112

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM--FGSPETT 217
            +EI       +       + +       S+  S   L+  N+  + + V+  +      
Sbjct: 113 NSEINNPTDLMVNIGSKINVVRNQNSRFRSVLNSATTLLTYNESMLIVRVIKAYLMRIKE 172

Query: 218 TGGNALKFYSSVRLDIRRVGSIKDKDSIT----GNQTRVKVVKN 257
            GG +L  Y+    D      +K          GN+ +V+ +K 
Sbjct: 173 AGGTSLITYTEDSADNIIETMLKSMVDNIIRMDGNELQVEAMKG 216


>gi|153806217|ref|ZP_01958885.1| hypothetical protein BACCAC_00472 [Bacteroides caccae ATCC 43185]
 gi|149130894|gb|EDM22100.1| hypothetical protein BACCAC_00472 [Bacteroides caccae ATCC 43185]
          Length = 459

 Score = 39.4 bits (90), Expect = 0.80,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 13/91 (14%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           + ++  + QI+               S   GI  + +G   LD      G+  G  V I 
Sbjct: 161 QLMDDTIKQIEARI-----------SSNKNGITGLPTGFSDLDRL--TCGWQPGDEVVIA 207

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
              + GKT+ ALH    +   G   A    E
Sbjct: 208 ARPAVGKTSFALHLARAAASAGYHIAIFSLE 238


>gi|222099275|ref|YP_002533843.1| hypothetical protein CTN_0301 [Thermotoga neapolitana DSM 4359]
 gi|221571665|gb|ACM22477.1| Hypothetical Protein CTN_0301 [Thermotoga neapolitana DSM 4359]
          Length = 252

 Score = 39.4 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+ V +G  G+D  L  GG P+  IV I G   +GKT  +   I    + G    +V  E
Sbjct: 12  IKRVKTGIPGMDEIL-HGGIPERNIVLISGGPGTGKTIFSQQFIWNGLQMGEPGIYVALE 70

Query: 105 H 105
            
Sbjct: 71  E 71


>gi|113954230|ref|YP_731784.1| DNA repair protein RadA [Synechococcus sp. CC9311]
 gi|113881581|gb|ABI46539.1| DNA repair protein RadA [Synechococcus sp. CC9311]
          Length = 465

 Score = 39.4 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 67/162 (41%), Gaps = 13/162 (8%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           A+  LG +      I+ + SG   LD  LG GG   G +V + G    GK+TL L + + 
Sbjct: 63  AMADLGDR-----PIQRLESGYPELDRVLG-GGVVPGSLVLVGGDPGIGKSTLLLQSASV 116

Query: 91  SQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148
                 +  +V AE +   +     +LG + + L +      E  LE+    + +   D+
Sbjct: 117 MANR-LSVLYVSAEESAQQVKLRWLRLGGESEGLQLLA----ETDLELVLEELEALQPDV 171

Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
            +IDS+ AL            +     A  + +  ++  +++
Sbjct: 172 AIIDSIQALHDANLSSAPGSVAQVRECAASLQRLAKRQNTAL 213


>gi|21230557|ref|NP_636474.1| hypothetical protein XCC1099 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66769452|ref|YP_244214.1| hypothetical protein XC_3150 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188992641|ref|YP_001904651.1| hypothetical protein xccb100_3246 [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21112132|gb|AAM40398.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574784|gb|AAY50194.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734401|emb|CAP52611.1| Conserved hypothetical protein [Xanthomonas campestris pv.
           campestris]
          Length = 200

 Score = 39.4 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 2/103 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPE-SSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           S+G   LD  L  GG+P+  + E+  P    G+  L L T+A+    G     V   +  
Sbjct: 27  STGHAALDAVLPDGGWPRRALTELLLPAHGIGEIALLLPTLARMTGAGSRVVLVAPPYVP 86

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            +   +  GV L+ L I Q +  + AL   +  +RSGA   ++
Sbjct: 87  YAPAWQAGGVALQQLEIVQAEPRD-ALWAFEQCLRSGACAAVL 128


>gi|312095942|ref|XP_003148516.1| hypothetical protein LOAG_12956 [Loa loa]
 gi|307756318|gb|EFO15552.1| hypothetical protein LOAG_12956 [Loa loa]
          Length = 143

 Score = 39.4 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
          +G   +D  L  GG  KG++ E  G  +SGKT L L  IA      G 
Sbjct: 29 TGCPDIDTYLN-GGVAKGKLTEFVGNVASGKTQLCLSLIANQLIDDGK 75


>gi|296827198|ref|XP_002851132.1| DNA repair protein RAD57 [Arthroderma otae CBS 113480]
 gi|238838686|gb|EEQ28348.1| DNA repair protein RAD57 [Arthroderma otae CBS 113480]
          Length = 604

 Score = 39.4 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 57/182 (31%), Gaps = 25/182 (13%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-----GTCAFV 101
            +S+    LD AL  GG   G + E+ G   +GKT   LH +   Q            ++
Sbjct: 118 RISTLDPILDSALA-GGISTGYLTEVTGESGAGKTQFLLHLLLSVQLPAPHGLSKNALYI 176

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPD------------------TGEQALEITDMLVRS 143
             E  L +    +L  +   L    PD                  T E  +     +  S
Sbjct: 177 STESDLATNRLSQLLNEHTVLQSLHPDIPRPSLDNVFSVTTVDLETQEHIINYQVPVAIS 236

Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
                +V+        RAE       S    ++  + +    L +   R    +V  NQ+
Sbjct: 237 RFDIGLVVIDSITANYRAE-SSTESVSGLLERSWQLKKLGHFLRALAVRHSIAIVVANQI 295

Query: 204 RM 205
             
Sbjct: 296 SD 297


>gi|330891561|gb|EGH24222.1| hypothetical protein PSYMO_23263 [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 206

 Score = 39.4 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 11/137 (8%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI-Y 73
           +LEA L   +R   KG       +      +    SG   LD AL  GG+P   + EI  
Sbjct: 6   SLEALLD--ERRVWKG-------RQQGAPQVSPHPSGHALLDSALPTGGWPAAALTEILI 56

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
               SG+  L   ++A+    G     +   +          GVDL+ L++ +    + A
Sbjct: 57  PANGSGELRLLWPSLARLSAIGERIVLIAPPYIPYPQAWLAAGVDLRQLVVIEAGPRD-A 115

Query: 134 LEITDMLVRSGAVDIIV 150
           L   +  +RSG+   +V
Sbjct: 116 LWAAEQCLRSGSCGAVV 132


>gi|320324028|gb|EFW80111.1| hypothetical protein PsgB076_14282 [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 206

 Score = 39.4 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 11/137 (8%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI-Y 73
           +LEA L   +R   KG       +      +    SG   LD AL  GG+P   + EI  
Sbjct: 6   SLEALLD--ERRVWKG-------RQQGAPQVSPHPSGHALLDSALPTGGWPAAALTEILI 56

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
               SG+  L   ++A+    G     +   +          GVDL+ L++ +    + A
Sbjct: 57  PANGSGELRLLWPSLARLSAIGERIVLIAPPYIPYPQAWLAAGVDLRQLVVIEAGPRD-A 115

Query: 134 LEITDMLVRSGAVDIIV 150
           L   +  +RSG+   +V
Sbjct: 116 LWAAEQCLRSGSCGAVV 132


>gi|300742471|ref|ZP_07072492.1| DNA repair protein RadA [Rothia dentocariosa M567]
 gi|300381656|gb|EFJ78218.1| DNA repair protein RadA [Rothia dentocariosa M567]
          Length = 475

 Score = 39.4 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 56/169 (33%), Gaps = 25/169 (14%)

Query: 30  GAIMQLGSQGSIFEGIEVV-----------SSGSLGLDIALGIGGFPKGRIVEIYGPESS 78
           G + +  +  S+ +  +V+           S+G+   D  LG GG   G ++ + G    
Sbjct: 45  GTVARTRTASSVQKPAQVIGEVDSTVAAYMSTGNPEFDRVLG-GGLVPGAVILMAGEPGV 103

Query: 79  GKTTLALHTI---------AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD- 128
           GK+TL L                         D  +      A ++ +    +       
Sbjct: 104 GKSTLLLDVAATFARGYTPRTPAAERARAKTRDVLYVTGEESAAQVKLRADRIHAVADTL 163

Query: 129 --TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175
             T E  L      +      ++VIDSV  L   A++EG  G      +
Sbjct: 164 YLTSETDLGTALAHIEQVDPALLVIDSVQTLAS-ADVEGSAGGVTQVRE 211


>gi|281704340|gb|ADA77115.1| disrupted meiotic cDNA 1 [Pseudoroegneria stipifolia]
 gi|281704342|gb|ADA77116.1| disrupted meiotic cDNA 1 [Bromus pseudolaevipes]
 gi|281704344|gb|ADA77117.1| disrupted meiotic cDNA 1 [Bromus tectorum]
 gi|281704346|gb|ADA77118.1| disrupted meiotic cDNA 1 [Bromus caroli-henrici]
 gi|281704348|gb|ADA77119.1| disrupted meiotic cDNA 1 [Bromus scoparius]
 gi|281704350|gb|ADA77120.1| disrupted meiotic cDNA 1 [Bromus pseudodanthoniae]
 gi|281704352|gb|ADA77121.1| disrupted meiotic cDNA 1 [Bromus danthoniae]
 gi|281704356|gb|ADA77123.1| disrupted meiotic cDNA 1 [Bromus japonicus]
 gi|281704358|gb|ADA77124.1| disrupted meiotic cDNA 1 [Bromus squarrosus]
 gi|281704362|gb|ADA77126.1| disrupted meiotic cDNA 1 [Bromus hordeaceus]
 gi|281704364|gb|ADA77127.1| disrupted meiotic cDNA 1 [Bromus hordeaceus]
 gi|281704366|gb|ADA77128.1| disrupted meiotic cDNA 1 [Bromus alopecuros subsp. alopecuros]
 gi|281704368|gb|ADA77129.1| disrupted meiotic cDNA 1 [Bromus alopecuros subsp. alopecuros]
          Length = 115

 Score = 39.4 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 6/103 (5%)

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
               +      ++++DSV AL          G      + + ++Q L +LT         
Sbjct: 12  LAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAERQQKLAQMLSRLTKIAEEFNVA 67

Query: 197 LVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVG 237
           +   NQ+    G       P+   GG+ L   +++RL +R+  
Sbjct: 68  VYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLRKGK 110


>gi|225619890|ref|YP_002721147.1| DNA repair protein RadA [Brachyspira hyodysenteriae WA1]
 gi|225214709|gb|ACN83443.1| DNA repair protein RadA [Brachyspira hyodysenteriae WA1]
          Length = 462

 Score = 39.4 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 4/117 (3%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
                +S+    L+  LG GG  +G ++ I G    GK+TL L T +          +  
Sbjct: 71  NDRTRISTNIDELNRVLG-GGIVQGSVILIGGEPGIGKSTLLLQTASNIA-KNEKVYYFT 128

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
            E +L+ I  R   + L++       + E   +     +      + +IDS+  +  
Sbjct: 129 GEESLEQIKLRADRLTLEDSDFLI--SSESNCDNIINTLLDDTPSLAIIDSIQTIYS 183


>gi|71735634|ref|YP_274868.1| hypothetical protein PSPPH_2678 [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556187|gb|AAZ35398.1| conserved hypothetical protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320329028|gb|EFW85027.1| hypothetical protein PsgRace4_17174 [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 207

 Score = 39.4 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 11/137 (8%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI-Y 73
           +LEA L   +R   KG       +      +    SG   LD AL  GG+P   + EI  
Sbjct: 7   SLEALLD--ERRVWKG-------RQQGAPQVSPHPSGHALLDSALPTGGWPAAALTEILI 57

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
               SG+  L   ++A+    G     +   +          GVDL+ L++ +    + A
Sbjct: 58  PANGSGELRLLWPSLARLSAIGERIVLIAPPYIPYPQAWLAAGVDLRQLVVIEAGPRD-A 116

Query: 134 LEITDMLVRSGAVDIIV 150
           L   +  +RSG+   +V
Sbjct: 117 LWAAEQCLRSGSCGAVV 133


>gi|238853162|ref|ZP_04643549.1| DNA repair protein RadA [Lactobacillus gasseri 202-4]
 gi|238834216|gb|EEQ26466.1| DNA repair protein RadA [Lactobacillus gasseri 202-4]
          Length = 459

 Score = 39.4 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 10/119 (8%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E  + + +    L+  LG GG   G +V I G    GK+TL L        TG       
Sbjct: 70  EKEKRIVTPFEELNRVLG-GGIVPGSLVLIGGDPGIGKSTLMLQI------TGALAKEHS 122

Query: 103 AEHALDSIYARKLGVDLKNLLISQPD---TGEQALEITDMLVRSGAVDIIVIDSVAALT 158
             +      A ++ +    L +S        E  ++     +     D +VIDS+  + 
Sbjct: 123 VLYVSGEESASQIKMRADRLGVSNSGILLYPETNMQNIREQIDEIKPDFLVIDSIQTMN 181


>gi|300362342|ref|ZP_07058518.1| DNA repair protein RadA [Lactobacillus gasseri JV-V03]
 gi|300353333|gb|EFJ69205.1| DNA repair protein RadA [Lactobacillus gasseri JV-V03]
          Length = 459

 Score = 39.4 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 10/119 (8%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E  + + +    L+  LG GG   G +V I G    GK+TL L        TG       
Sbjct: 70  EKEKRIVTPFEELNRVLG-GGIVPGSLVLIGGDPGIGKSTLMLQI------TGALAKEHS 122

Query: 103 AEHALDSIYARKLGVDLKNLLISQPD---TGEQALEITDMLVRSGAVDIIVIDSVAALT 158
             +      A ++ +    L +S        E  ++     +     D +VIDS+  + 
Sbjct: 123 VLYVSGEESASQIKMRADRLGVSNSGILLYPETNMQNIREQIDEIKPDFLVIDSIQTMN 181


>gi|66809625|ref|XP_638535.1| hypothetical protein DDB_G0284507 [Dictyostelium discoideum AX4]
 gi|74897050|sp|Q54PJ7|RA51C_DICDI RecName: Full=DNA repair protein RAD51 homolog 3
 gi|60467144|gb|EAL65180.1| hypothetical protein DDB_G0284507 [Dictyostelium discoideum AX4]
          Length = 381

 Score = 39.4 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 70/223 (31%), Gaps = 43/223 (19%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS------QKTGGTCAFV 101
           + +    +D  L  GG P  +I EI G    GKT +A   +  +          G   ++
Sbjct: 64  IITFCSEIDQMLN-GGTPLKKITEICGVPGIGKTNMAFQLLVNTSIPFDLGGVQGKAIYI 122

Query: 102 DAEHA----LDSIYARKLGVDLKNLLISQPDTGE-------------------QALEI-- 136
           D E +         A  L   L+ +L+  P T                       +EI  
Sbjct: 123 DTEGSYSCQRVREMATHLVNHLECVLLKNPMTQTTYIPTVETVLNSIYYYRVYHYIEIIS 182

Query: 137 ----TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192
                 + +       +++        R + +        G++ R +    + L +  +R
Sbjct: 183 LIHQLPLFLEKNKDVKLIVVDSITYPFRCDFKD------MGLRTRSLLSLAQNLMNIATR 236

Query: 193 SKCILVFINQMRMKIGVMFGSPE-TTTGGNALKFYSSVRLDIR 234
               +V +NQ+  KI             G +     + R+ + 
Sbjct: 237 YNLAVVVMNQVTTKISPNQKESILVPYLGESWTHICTYRMVLF 279


>gi|295101820|emb|CBK99365.1| hypothetical protein FP2_19600 [Faecalibacterium prausnitzii L2-6]
          Length = 631

 Score = 39.4 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 50/272 (18%), Positives = 87/272 (31%), Gaps = 26/272 (9%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKLGVDLKN 121
            P G++  + G    GKTT AL   A                   +       LG  +K 
Sbjct: 327 IPFGKVTIVQGNPGEGKTTFALRLAAACTTGRELPNMKPLPPFNVIYQTAEDGLGDTVKP 386

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD----MGESLPGMQAR 177
            L+      ++ L I +        D  +  ++     R  I       MGE     +A 
Sbjct: 387 RLMEAEADLDRVLVIDEAKRELTLSDERIEKAITQNGARLIILDPIQAYMGEKTDMNRAN 446

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
            +    R+L     R+ C ++ I    +       S     G    +  +   L I R  
Sbjct: 447 EVRPMFRRLADVAERTGCAVILI--GHLNKAAGGQSAYRGLGSIDFRAAARSVLLIGR-- 502

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297
            +K + ++      +   K+ +A   K V F +    G S+ GE      +      SGA
Sbjct: 503 -VKREPNV----RVIVHDKSSLAPEGKPVAFCLDPETGFSWIGEYDITADELL----SGA 553

Query: 298 WFSFKGQRLGQGRENSK---IFLRENIEIAEN 326
                G  + +  +  +     L +  E+A  
Sbjct: 554 ----GGNNVTKTEQAERLILDLLADGKELASE 581


>gi|325968147|ref|YP_004244339.1| circadian clock protein, KaiC [Vulcanisaeta moutnovskia 768-28]
 gi|323707350|gb|ADY00837.1| putative circadian clock protein, KaiC [Vulcanisaeta moutnovskia
           768-28]
          Length = 351

 Score = 39.4 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 60/185 (32%), Gaps = 24/185 (12%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   LD  +  GG  +G +  I G   +GKT  +L  +      G    +V  +   + 
Sbjct: 69  TGINYLDAYILGGGLKRGEVYLIAGEAGTGKTIFSLTFLRTGADLGEVGMYVTVDEPSED 128

Query: 110 IY---ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
           +       LG DL +          +      +        I   D    L PR ++   
Sbjct: 129 VKKGVRDALGWDLDSY---------ERGGKLIVADFRTYFRIYARDEKITLDPR-DLAKM 178

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM---------RMKIGVMFGSPETT 217
           + E +     + +   +  +   I  S   +++I +          RMK      + E  
Sbjct: 179 IIEQVKKYDVKRL--VIDPIAPLIIMSHQDVIWIREYLRELVFQLKRMKDVTTIMTSEIP 236

Query: 218 TGGNA 222
           TG   
Sbjct: 237 TGEEN 241


>gi|296109000|ref|YP_003615949.1| putative circadian clock protein, KaiC [Methanocaldococcus infernus
           ME]
 gi|295433814|gb|ADG12985.1| putative circadian clock protein, KaiC [Methanocaldococcus infernus
           ME]
          Length = 242

 Score = 39.4 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 88/262 (33%), Gaps = 61/262 (23%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA- 103
           ++ V +G  G+D  L  GG P+  +V + G   +GK+      + +  +     A + A 
Sbjct: 1   MKRVKTGIPGMDEIL-HGGIPERNVVLLSGGPGTGKSIFCQQFLYKGVELYDEPAVLVAL 59

Query: 104 -EHALD-SIYARKLGVDL-------------------------KNLLISQPDTGEQALEI 136
            EH +      ++ G D+                         +  L+  P+   + +++
Sbjct: 60  EEHPVQIRENMKQFGWDVKKFEDEGKFAIVDAFTYGIGSAAKREKYLVVDPNDERELIDV 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
               +       + IDSV  L     +                 + +  L   IS   C 
Sbjct: 120 LKRAINDIKAKRVGIDSVTTLYLHKPMMAR--------------KTVFLLKRVISGLGCT 165

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYS--SVRLDIRRVGSIKDKDSITGNQTRVKV 254
            VF +Q+ +         E   GG  ++      +RLD+       D+      ++ +  
Sbjct: 166 AVFTSQISV--------GERGFGGPGVEHAVDGIIRLDL-------DEVDGELKRSLIVW 210

Query: 255 VKNKMASPFKQVEFDIMYGEGI 276
                +   K+  F+I   EGI
Sbjct: 211 KMRGTSHSLKRHPFEIT-DEGI 231


>gi|33861898|ref|NP_893459.1| circadian clock protein KaiC [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|54036133|sp|Q7V0C4|KAIC_PROMP RecName: Full=Circadian clock protein kinase kaiC
 gi|33640266|emb|CAE19801.1| possible circadian clock protein KaiC [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 509

 Score = 39.4 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 4/86 (4%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA---LHTIAQSQKTGGTCAF 100
            ++ + +G  G D     GG P  R   + G   +GKT  +   LH    +    G    
Sbjct: 13  QVQKIPTGIEGFDDVC-RGGLPAARSTLVSGTSGTGKTVFSLQYLHHGICNFDEPGIFIT 71

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQ 126
            +         A   G DL+ L+   
Sbjct: 72  FEESPLDIIRNAASFGWDLQKLIDQN 97



 Score = 39.4 bits (90), Expect = 0.97,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 59/185 (31%), Gaps = 30/185 (16%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+L  + S       +SSG   LD   G GG+ +  I+   G   +GKT L    I  + 
Sbjct: 248 MRLTQRSSNI----RISSGVKDLDEMCG-GGYFQDSIILATGATGTGKTMLVSKFIEDAY 302

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLK----------NLLISQPDTG--EQALEITDML 140
                      E +   +        +            ++ + P++   E  L+I    
Sbjct: 303 NNKERAILFAYEESRAQLNRNATSWGIDFEKMENEGLLKIICAYPESTGLEDHLQIIKSQ 362

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +       + IDS++AL               G+      Q +  +T    + +    F 
Sbjct: 363 INEFKPKRLAIDSLSALA-------------RGVSLNAFRQFVIGVTGYSKQEEIAGFFT 409

Query: 201 NQMRM 205
           N    
Sbjct: 410 NTAEE 414


>gi|328886318|emb|CCA59557.1| Lipoprotein releasing system ATP-binding protein LolD [Streptomyces
           venezuelae ATCC 10712]
          Length = 259

 Score = 39.4 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 26/118 (22%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           + YGKG     G      +G+ V               G  +G    + GP  SGK+T  
Sbjct: 28  KEYGKG-----GRAVRALDGVTV---------------GIERGSFTAVMGPSGSGKSTFL 67

Query: 85  LHTIAQSQKTGGTCAFVDA------EHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
                  + TGG     D       E  L  +  +++G   +   +    +  + +E+
Sbjct: 68  HCAAGLDRPTGGAAHIGDTALAGMNETRLTELRRKRVGFVFQAFNLIPALSVRENVEL 125


>gi|281704360|gb|ADA77125.1| disrupted meiotic cDNA 1 [Bromus briziformis]
          Length = 115

 Score = 39.4 bits (90), Expect = 0.87,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 6/99 (6%)

Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
           +      ++++DSV AL          G      + + ++Q L +LT         +   
Sbjct: 16  MAEEPFRLLIVDSVIALFR----VDFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVYIT 71

Query: 201 NQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVG 237
           NQ+    G       P+   GG+ L   +++RL +R+  
Sbjct: 72  NQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLRKGK 110


>gi|269955205|ref|YP_003324994.1| DNA repair protein RadA [Xylanimonas cellulosilytica DSM 15894]
 gi|269303886|gb|ACZ29436.1| DNA repair protein RadA [Xylanimonas cellulosilytica DSM 15894]
          Length = 498

 Score = 39.4 bits (90), Expect = 0.87,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 46/142 (32%), Gaps = 12/142 (8%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-----QKTGGTCAFVDA 103
            +G   LD  LG GG   G +V + G    GK+TL L   +Q         GG  A    
Sbjct: 95  PTGVDELDRVLG-GGLVPGAVVLMAGEPGVGKSTLLLEVASQYARGVGAPKGGLRAVGGE 153

Query: 104 EHALDSIYARKLG------VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
              L        G        +  L  +     E  L      V + +  ++V+DSV  +
Sbjct: 154 RTVLYVTGEESAGQVRLRAERVGALAPTLLLAAETDLGTVLGHVEATSPALLVVDSVQTI 213

Query: 158 TPRAEIEGDMGESLPGMQARLM 179
                     G S     A  +
Sbjct: 214 ASAEVDGVAGGVSQVREVAAAL 235


>gi|15669549|ref|NP_248362.1| hypothetical protein MJ_1359 [Methanocaldococcus jannaschii DSM
           2661]
 gi|34098421|sp|Q58754|Y1359_METJA RecName: Full=UPF0273 protein MJ1359
 gi|1592003|gb|AAB99368.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 242

 Score = 39.4 bits (90), Expect = 0.87,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 85/256 (33%), Gaps = 60/256 (23%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ--SQKTGGTCAFVD 102
           ++ V +G  G+D  L  GG P+  +V + G   +GK+      + +        +     
Sbjct: 1   MKRVKTGIPGMDEIL-HGGIPERNVVLLSGGPGTGKSIFCQQFLYKGVVDYNEPSILVAL 59

Query: 103 AEHALD-SIYARKLGVDL-------------------------KNLLISQPDTGEQALEI 136
            EH +      R+ G D+                         +  +++ P+   + +++
Sbjct: 60  EEHPVQIRENMRQFGWDIRKLEEEGKFAIIDAFTYGIGSAAKREKYVVNDPNDERELIDV 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
               +       I IDSV  L     I   M          L  + +  L   IS   C 
Sbjct: 120 LKTAINDIGAKRIGIDSVTTLY----INKPM----------LARRTVFLLKRVISGLGCT 165

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYS--SVRLDIRRVGSIKDKDSITGNQTRVKV 254
            +F +Q+ +         E   GG  ++      +RLD+       D+      ++ +  
Sbjct: 166 AIFTSQISV--------GERGFGGPGVEHAVDGIIRLDL-------DEIDGELKRSLIVW 210

Query: 255 VKNKMASPFKQVEFDI 270
                +   K+  FDI
Sbjct: 211 KMRGTSHSLKRHPFDI 226


>gi|307298999|ref|ZP_07578801.1| DNA repair protein RadA [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915424|gb|EFN45809.1| DNA repair protein RadA [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 441

 Score = 39.4 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 49/155 (31%), Gaps = 2/155 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
             + +    L+ +LG GG   G  V I G    GK+TL L   A          ++ AE 
Sbjct: 64  SRIDTKIEELNRSLG-GGVVPGSAVLISGEPGIGKSTLMLQLSALIAGE-RPVLYISAEE 121

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +   +  R   + ++     +  +  +   +  + +    + ++       ++    + G
Sbjct: 122 SARQLRLRAERLKIQRKEQIEVVSATEIDFLGSLAIEKYGMIVVDSLQTIKMSSVPSLPG 181

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
            + +        +       +   I         I
Sbjct: 182 SVVQVRECANMLVSLAKSSDIPVLIVSHITKGGQI 216


>gi|146317723|ref|YP_001197435.1| recombination protein A [Streptococcus suis 05ZYH33]
 gi|145688529|gb|ABP89035.1| recombination protein A [Streptococcus suis 05ZYH33]
          Length = 30

 Score = 39.4 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 18/25 (72%)

Query: 16 LEAALSQIQRVYGKGAIMQLGSQGS 40
          ++ AL  I++ +GKGA+M+LG +  
Sbjct: 1  MDDALKSIEKDFGKGAVMRLGERAE 25


>gi|86158218|ref|YP_465003.1| hypothetical protein Adeh_1793 [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774729|gb|ABC81566.1| hypothetical protein Adeh_1793 [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 691

 Score = 39.4 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
            +  +  G E +++G   LD ALG GG     +V +  P  +GK++ +     +  + GG
Sbjct: 341 QESRLERGTERIATGWTRLDAALG-GGLAVPSLVVLGAPPKAGKSSWSQILAVRHVEAGG 399

Query: 97  TCAFVDAEHA 106
               +D E+ 
Sbjct: 400 VAYVLDLENG 409


>gi|57641525|ref|YP_184003.1| hypothetical protein TK1590 [Thermococcus kodakarensis KOD1]
 gi|73921038|sp|Q5JDS9|Y1590_PYRKO RecName: Full=UPF0273 protein TK1590
 gi|57159849|dbj|BAD85779.1| predicted ATPase, AAA superfamily [Thermococcus kodakarensis KOD1]
          Length = 248

 Score = 39.4 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 3/83 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I+ V +G  G+D  L  GG P+  +V + G   +GK+  +   +    + G    +V  E
Sbjct: 2   IKRVKTGIPGMDEIL-HGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 60

Query: 105 --HALDSIYARKLGVDLKNLLIS 125
                      + G D++     
Sbjct: 61  EHPVQVRQNMAQFGWDVRKYEEE 83


>gi|154273779|ref|XP_001537741.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150415349|gb|EDN10702.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 415

 Score = 39.4 bits (90), Expect = 0.89,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 58/200 (29%), Gaps = 25/200 (12%)

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQKTGGTCAFVD------AEHALDSI 110
             GG  +G I E+ GP   GKT  A                    D       +    S 
Sbjct: 9   STGGIKRGEITEVIGPRGVGKTAFAKCVTSSAESCLDRFKDILQRDRHSRSSDDSFDPSS 68

Query: 111 YARKLGVDLKNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTP-------- 159
              K+   L  LL   P T    L +              +IVIDS+++L          
Sbjct: 69  GGNKIDEFLNQLLYFHPPTIAHLLALISHSPKGFPPPEAGLIVIDSISSLFTSEYRTRLP 128

Query: 160 ----RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP- 214
               +A+            + +++      L     R  C++V IN+M  +         
Sbjct: 129 RGNQKAKFIATAESKNERTRWKIIGNLAMNLKKLAVRLNCVVVVINEMASRFRGKRPPIL 188

Query: 215 ETTTGGNALKFYSSVRLDIR 234
                G       + R+ + 
Sbjct: 189 HEALSGMTWDSGVATRIMLC 208


>gi|317052327|ref|YP_004113443.1| phosphonate ABC transporter ATPase subunit [Desulfurispirillum
           indicum S5]
 gi|316947411|gb|ADU66887.1| phosphonate ABC transporter, ATPase subunit [Desulfurispirillum
           indicum S5]
          Length = 276

 Score = 39.4 bits (90), Expect = 0.90,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 9/147 (6%)

Query: 45  IEVVSSGSLGLDIAL-GIG-GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           ++   +G    D+AL G+    P+G+++ + GP  +GK+TL        + T G     +
Sbjct: 8   VKRYPTG----DLALKGVKLAVPRGQVMALIGPSGAGKSTLIRCVNRLVEPTDGRITLGN 63

Query: 103 AE-HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           AE  AL S   R+    +  +         + L + + ++      +    S     P+A
Sbjct: 64  AELTALGSAALRQQRRRMGMIFQEYAL--VERLSVMENVLSGRLGYVGFWRSFLRRYPQA 121

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTS 188
           +I+   G            +    L+ 
Sbjct: 122 DIDAAFGLLERVGLDHFADKRADALSG 148


>gi|229593896|ref|XP_001026120.3| hypothetical protein TTHERM_01143840 [Tetrahymena thermophila]
 gi|225567231|gb|EAS05875.3| hypothetical protein TTHERM_01143840 [Tetrahymena thermophila
           SB210]
          Length = 322

 Score = 39.4 bits (90), Expect = 0.90,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 3/103 (2%)

Query: 1   MDYRKEMNIVDK--SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIA 58
           + Y +++  +++  +K L  A  +I   + K  +          + ++ ++ G   LD  
Sbjct: 28  LSYEEDLLKLNRMTNKQLNDAQYKISSSFCKTPLQNAKELLKKQQNLQNLTFGEKELDDL 87

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           L  GG   G++ E+ G   SGK+ LA   I+Q+ K     A+ 
Sbjct: 88  L-EGGLQIGKVYELSGYPCSGKSILAQKLISQNFKCNQKGAWY 129


>gi|293399342|ref|ZP_06643507.1| replicative DNA helicase, phage associated protein [Neisseria
           gonorrhoeae F62]
 gi|291610756|gb|EFF39866.1| replicative DNA helicase, phage associated protein [Neisseria
           gonorrhoeae F62]
          Length = 453

 Score = 39.4 bits (90), Expect = 0.91,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 93/268 (34%), Gaps = 29/268 (10%)

Query: 4   RKEMNIVDKSKAL-EAALSQIQRVYGKGAIMQLGSQGSIFEGIEV-VSSGSLGLDIALGI 61
            K     D+  A+ + A+ +  + +G+     +G      +G+   + +G + LD     
Sbjct: 140 EKLSKAADELAAVGKDAVKRETKTFGQTVEDLIGGLDKRLDGVRFGLPTGLMKLDGM--T 197

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK- 120
           GG P G ++ I    S GKT LA +    + K G    F   E +   +  R +  +   
Sbjct: 198 GGLPDGNLIVIAARPSMGKTVLAENIARFALKQGKAVHFQSYEMSAVELARRGMAAECNI 257

Query: 121 --------NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
                   NL  S        +            D++ +D +  L    ++   + + L 
Sbjct: 258 PMQNLKTGNLTQSDYANMPIYVSQAKEWKFDVNCDLLNVDELCFLAKEKKLTTGL-DLLV 316

Query: 173 GMQARLM--------------SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
                +M              S+ L+ L + ++    ++  +N+   K      +     
Sbjct: 317 VDHLHIMPRAGRDEVAELGNISRRLKNLAAELNIPVVLVAQLNRGNTKQADKRPNMADIR 376

Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           G  A++  +++ +   R  S  D +   
Sbjct: 377 GSGAIEQDANIIIMPHR-ESYYDGNENP 403


>gi|170727873|ref|YP_001761899.1| DNA repair protein RadA [Shewanella woodyi ATCC 51908]
 gi|169813220|gb|ACA87804.1| DNA repair protein RadA [Shewanella woodyi ATCC 51908]
          Length = 457

 Score = 39.4 bits (90), Expect = 0.91,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 52/140 (37%), Gaps = 10/140 (7%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   LD  L  GG   G +  I G   +GKTTL L  +           +  AE +L  
Sbjct: 75  TGIGELDRVL-CGGLTTGSVNIISGDPGAGKTTL-LSDLVSRMSQIMPSLYCTAEESLSQ 132

Query: 110 IYAR----KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
              R    KL  + +NL +    + E  +   +       V   VIDS+ A+        
Sbjct: 133 FKNRVNRLKLNCNEENLYLMAETSVEAIIAELEA----KKVKFAVIDSIQAVVTELANGS 188

Query: 166 DMGESLPGMQARLMSQALRK 185
               S     A+ ++Q  ++
Sbjct: 189 PGSPSQVKSSAQSLTQYCKQ 208


>gi|301101197|ref|XP_002899687.1| DNA repair protein XRCC3 [Phytophthora infestans T30-4]
 gi|262102689|gb|EEY60741.1| DNA repair protein XRCC3 [Phytophthora infestans T30-4]
          Length = 277

 Score = 39.4 bits (90), Expect = 0.91,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 81/229 (35%), Gaps = 44/229 (19%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCAF 100
           V+ SG   +D  L  GGF  G + EI G  S+GKT L L  +             GT  +
Sbjct: 16  VLPSGCDSIDELL-HGGFRSGILTEICGEASAGKTQLCLQLLLQCCLPRSLGGLQGTACY 74

Query: 101 VDAE--------HALDSIYARKLGVD---------------------LKNLLISQPDTGE 131
           +  E        H L  +YA++ G                       L  + + Q  T +
Sbjct: 75  ICTEGVGSVKRLHDLAQVYAKRYGGVMGIGAKRKRGEAVPKLSGSDFLDGIFVEQLYTVD 134

Query: 132 QALEI----TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187
             +++      ML+      ++V+DSVAA+  R E    + E+    ++R M      + 
Sbjct: 135 DLMDLVQARLPMLLAEQNTKLVVLDSVAAVF-RLESTSSVKEA--AERSRTMFHMANCMR 191

Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTG-GNALKFYSSVRLDIRR 235
               +   + V  NQ+                 G +     + RL I R
Sbjct: 192 ILSDQYGVVFVVTNQVTGDFDPRSNGNGLRPALGLSWSHCINQRLMITR 240


>gi|254976731|ref|ZP_05273203.1| putative phage-related replicative helicase [Clostridium difficile
           QCD-66c26]
 gi|255094115|ref|ZP_05323593.1| putative phage-related replicative helicase [Clostridium difficile
           CIP 107932]
 gi|255315866|ref|ZP_05357449.1| putative phage-related replicative helicase [Clostridium difficile
           QCD-76w55]
 gi|255518527|ref|ZP_05386203.1| putative phage-related replicative helicase [Clostridium difficile
           QCD-97b34]
 gi|255651646|ref|ZP_05398548.1| putative phage-related replicative helicase [Clostridium difficile
           QCD-37x79]
 gi|260684683|ref|YP_003215968.1| putative phage-related replicative helicase [Clostridium difficile
           CD196]
 gi|260688341|ref|YP_003219475.1| putative phage-related replicative helicase [Clostridium difficile
           R20291]
 gi|306521447|ref|ZP_07407794.1| putative phage-related replicative helicase [Clostridium difficile
           QCD-32g58]
 gi|260210846|emb|CBA65934.1| putative phage-related replicative helicase [Clostridium difficile
           CD196]
 gi|260214358|emb|CBE06736.1| putative phage-related replicative helicase [Clostridium difficile
           R20291]
          Length = 411

 Score = 39.4 bits (90), Expect = 0.91,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + +G   LD    IGG   G +  I      GKT LAL  +      G    F+  E 
Sbjct: 138 EGIKTGIKFLDD--TIGGLYGGELTTIAAKSGRGKTALALQILRNVIFQGKKVLFISGEM 195

Query: 106 ALDSIYARKL 115
           +   I  R +
Sbjct: 196 SDIQILFRNI 205


>gi|59801477|ref|YP_208189.1| putative replicative DNA helicase, putative phage associated
           protein [Neisseria gonorrhoeae FA 1090]
 gi|59718372|gb|AAW89777.1| putative replicative DNA helicase, putative phage associated
           protein [Neisseria gonorrhoeae FA 1090]
          Length = 453

 Score = 39.4 bits (90), Expect = 0.91,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 93/268 (34%), Gaps = 29/268 (10%)

Query: 4   RKEMNIVDKSKAL-EAALSQIQRVYGKGAIMQLGSQGSIFEGIEV-VSSGSLGLDIALGI 61
            K     D+  A+ + A+ +  + +G+     +G      +G+   + +G + LD     
Sbjct: 140 EKLSKAADELAAVGKDAVKRETKTFGQTVEDLIGGLDKRLDGVRFGLPTGLMKLDGM--T 197

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK- 120
           GG P G ++ I    S GKT LA +    + K G    F   E +   +  R +  +   
Sbjct: 198 GGLPDGNLIVIAARPSMGKTVLAENIARFALKQGKAVHFQSYEMSAVELARRGMAAECNI 257

Query: 121 --------NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
                   NL  S        +            D++ +D +  L    ++   + + L 
Sbjct: 258 PMQNLKTGNLTQSDYANMPIYVSQAKEWKFDVNCDLLNVDELCFLAKEKKLTTGL-DLLV 316

Query: 173 GMQARLM--------------SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
                +M              S+ L+ L + ++    ++  +N+   K      +     
Sbjct: 317 VDHLHIMPRAGRDEVAELGNISRRLKNLAAELNTPVVLVAQLNRGNTKQADKRPNMADIR 376

Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           G  A++  +++ +   R  S  D +   
Sbjct: 377 GSGAIEQDANIIIMPHR-ESYYDGNENP 403


>gi|254468953|ref|ZP_05082359.1| replicative DNA helicase [beta proteobacterium KB13]
 gi|207087763|gb|EDZ65046.1| replicative DNA helicase [beta proteobacterium KB13]
          Length = 458

 Score = 39.4 bits (90), Expect = 0.93,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 60/184 (32%), Gaps = 5/184 (2%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI-AQSQKTGG 96
           Q      +  + +G   LD+     G   G ++ I G  S GKT+LAL+     S  TG 
Sbjct: 183 QRDNPSDVTGIPTGYKDLDMM--TSGLQPGDLIIIAGRPSMGKTSLALNMCEYVSVDTGL 240

Query: 97  TCAFVDAEHALDSIYARKLGV--DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
             A    E A   + +R +G    L    +      +   E     +       I ID  
Sbjct: 241 PTAVFSMEMASTQLVSRLIGSVGKLNQHKMRTGQLDDNDWEKLSYALGQLNEAPIFIDEG 300

Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214
           +AL P               +  L+     +L  S   ++     I+++   +  +    
Sbjct: 301 SALNPYEVRARARRLHKQCGRLGLIVIDYLQLMGSAGSTENRATEISEISRSLKALAKEL 360

Query: 215 ETTT 218
               
Sbjct: 361 NVPV 364


>gi|254173244|ref|ZP_04879917.1| RecA-superfamily ATPase implicated in signal transduction
           [Thermococcus sp. AM4]
 gi|214032653|gb|EEB73482.1| RecA-superfamily ATPase implicated in signal transduction
           [Thermococcus sp. AM4]
          Length = 248

 Score = 39.4 bits (90), Expect = 0.94,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 3/83 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  V +G  G+D  L  GG P+  +V + G   +GKT  +   I    + G    +V  E
Sbjct: 2   IRKVKTGIPGMDEIL-HGGIPERNVVLLSGGPGTGKTIFSQQFIWNGLQMGEPGIYVALE 60

Query: 105 --HALDSIYARKLGVDLKNLLIS 125
                      + G D++     
Sbjct: 61  EHPVQVRQNMAQFGWDVRKYEEE 83


>gi|31087825|gb|AAN27947.1| disrupted meiotic cDNA 1 [Hordeum patagonicum subsp. magellanicum]
          Length = 138

 Score = 39.4 bits (90), Expect = 0.94,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 50/150 (33%), Gaps = 18/150 (12%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N++ ++  T E    +       +      ++++DSV AL          G      + 
Sbjct: 1   DNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAERQ 56

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR 234
           + ++Q L +           +   NQ+    G       P+   GG+ L   +++RL +R
Sbjct: 57  QKLAQMLSRXXXXAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           +           G Q   K+         +
Sbjct: 117 KGK---------GEQRVCKIFDAPNLPEGE 137


>gi|217076248|ref|YP_002333964.1| hypothetical protein THA_115 [Thermosipho africanus TCF52B]
 gi|217036101|gb|ACJ74623.1| ATPase, RecA superfamily [Thermosipho africanus TCF52B]
          Length = 234

 Score = 39.4 bits (90), Expect = 0.95,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 3/82 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI-AQSQKTGGTCAFVDA 103
           ++ VS+G +GLD  L  GG P+  +V + G   +GK+  +   +    Q           
Sbjct: 1   MKKVSTGIIGLDEILN-GGIPEKNVVLLSGGPGTGKSIFSQQFLWHGLQNNEPGIYVALE 59

Query: 104 EHALD-SIYARKLGVDLKNLLI 124
           EH +       + G ++K    
Sbjct: 60  EHPIQVRQNMSQFGWNIKPFEE 81


>gi|326479127|gb|EGE03137.1| DNA repair protein [Trichophyton equinum CBS 127.97]
          Length = 604

 Score = 39.4 bits (90), Expect = 0.95,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 6/95 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-----GTCAFVD 102
           +S+    LD AL  GG   G + E+ G   +GKT   LH +   Q            ++ 
Sbjct: 120 ISTLDPILDSALS-GGISTGYLTEVTGESGAGKTQFLLHLLLSVQLPAPHGLSKNALYIS 178

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
            E  L +    +L  + + L    P+T   +L+  
Sbjct: 179 TESDLATNRLSQLINEHRTLQALHPETPRPSLDNI 213


>gi|326469904|gb|EGD93913.1| hypothetical protein TESG_01443 [Trichophyton tonsurans CBS 112818]
          Length = 612

 Score = 39.4 bits (90), Expect = 0.95,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 6/95 (6%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-----GTCAFVD 102
           +S+    LD AL  GG   G + E+ G   +GKT   LH +   Q            ++ 
Sbjct: 120 ISTLDPILDSALS-GGISTGYLTEVTGESGAGKTQFLLHLLLSVQLPAPHGLSKNALYIS 178

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137
            E  L +    +L  + + L    P+T   +L+  
Sbjct: 179 TESDLATNRLSQLINEHRTLQALHPETPRPSLDNI 213


>gi|240128894|ref|ZP_04741555.1| putative replicative DNA helicase, putative phage associated
           protein [Neisseria gonorrhoeae SK-93-1035]
 gi|268687275|ref|ZP_06154137.1| DnaB helicase [Neisseria gonorrhoeae SK-93-1035]
 gi|268627559|gb|EEZ59959.1| DnaB helicase [Neisseria gonorrhoeae SK-93-1035]
          Length = 453

 Score = 39.4 bits (90), Expect = 0.95,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 93/268 (34%), Gaps = 29/268 (10%)

Query: 4   RKEMNIVDKSKAL-EAALSQIQRVYGKGAIMQLGSQGSIFEGIEV-VSSGSLGLDIALGI 61
            K     D+  A+ + A+ +  + +G+     +G      +G+   + +G + LD     
Sbjct: 140 EKLSKAADELAAVGKDAVKRETKTFGQTVEDLIGGLDKRLDGVRFGLPTGLMKLDGM--T 197

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK- 120
           GG P G ++ I    S GKT LA +    + K G    F   E +   +  R +  +   
Sbjct: 198 GGLPDGNLIVIAARPSMGKTVLAENIARFALKQGKAVHFQSYEMSAVELARRGMAAECNI 257

Query: 121 --------NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
                   NL  S        +            D++ +D +  L    ++   + + L 
Sbjct: 258 PMQNLKTGNLTQSDYANMPIYVSQAKEWKFDVNCDLLNVDELCFLAKEKKLTTGL-DLLV 316

Query: 173 GMQARLM--------------SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
                +M              S+ L+ L + ++    ++  +N+   K      +     
Sbjct: 317 VDHLHIMPRAGRDEVAELGNISRRLKNLAAELNIPVVLVAQLNRGNTKQADKRPNMADIR 376

Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           G  A++  +++ +   R  S  D +   
Sbjct: 377 GSGAIEQDANIIIMPHR-ESYYDGNENP 403


>gi|325495891|gb|EGC93751.1| ATP-binding protein [Escherichia fergusonii ECD227]
          Length = 464

 Score = 39.4 bits (90), Expect = 0.96,   Method: Composition-based stats.
 Identities = 62/347 (17%), Positives = 120/347 (34%), Gaps = 48/347 (13%)

Query: 31  AIMQL----GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           A+M+L    G +   F+ +  +      L+I L     P+G+IV + GP  SGK+T    
Sbjct: 136 AVMRLIPDDGDKVPTFKQLGFIPEQIRLLNIMLR---RPEGKIV-LSGPTGSGKSTTLRS 191

Query: 87  TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
                         +  E     +  + LG     ++  + D     L  +         
Sbjct: 192 ACRVYLDDNQGRHLLTIED---PLEGQILGATQTPIICDKSDEDAVKLAWSRA------- 241

Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
               I S   L P A +EG+M + +  M     +Q    + +++  +  + +       +
Sbjct: 242 ----ISSAMRLDPDAIMEGEMRDLISMMSTTYAAQTGHIVLTTLHTNSALGI-----PER 292

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLD-----IRRVGSIKDKDSITGNQTRV---KVVKNK 258
           +  M  + +       L    S RL        R+   K    ++ ++         K+ 
Sbjct: 293 MITMGMNADLICDAQLLIGMISQRLVPTLCPSCRIPWEKRAPELSDDERDYLERHCNKDS 352

Query: 259 MASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF------KGQRLGQ---- 308
           + S    + F   +G        +I+ G K   + K     +          RL Q    
Sbjct: 353 LCSTD-NIWFRNHHGCSECNHDVIIN-GRKRGEIGKGLTGRTVIAEVIEPDNRLFQILKT 410

Query: 309 -GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354
            G+  ++ +  EN++    +E LLR+    + D L  +  I   +D 
Sbjct: 411 RGKVAARKYWLENMKGISRVEHLLRRINEGLVDPLEADRIIPLDEDE 457


>gi|261403542|ref|YP_003247766.1| putative circadian clock protein, KaiC [Methanocaldococcus
           vulcanius M7]
 gi|261370535|gb|ACX73284.1| putative circadian clock protein, KaiC [Methanocaldococcus
           vulcanius M7]
          Length = 242

 Score = 39.4 bits (90), Expect = 0.96,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 89/262 (33%), Gaps = 61/262 (23%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA- 103
           +  V +G  G+D  L  GG P+  +V + G   +GK+      + +        + + A 
Sbjct: 1   MRRVKTGIPGMDEIL-HGGIPERNVVLLSGGPGTGKSIFCQQFLYKGAAEYDEPSILVAL 59

Query: 104 -EHALD-SIYARKLGVDL-------------------------KNLLISQPDTGEQALEI 136
            EH +      ++ G ++                         +  +++ P+   + +++
Sbjct: 60  EEHPVQIRENMKQFGWNVRKLEEEGKFAIIDAFTYGIGSSAKRERYVVNDPNDERELIDV 119

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
               +       I IDSV  L     I   M          +  + +  L   IS   C 
Sbjct: 120 LKTAINDIDAKRIGIDSVTTLY----INKPM----------MARRTVFLLKRVISGLGCT 165

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYS--SVRLDIRRVGSIKDKDSITGNQTRVKV 254
            +F +Q+ +         E   GG  ++      +RLD+       D+      ++ +  
Sbjct: 166 AIFTSQISV--------GERGFGGPGVEHAVDGIIRLDL-------DEIDGELKRSLIVW 210

Query: 255 VKNKMASPFKQVEFDIMYGEGI 276
                +   K+  FDI   EGI
Sbjct: 211 KMRGTSHSLKRHPFDIT-DEGI 231


>gi|89097264|ref|ZP_01170154.1| replicative DNA helicase [Bacillus sp. NRRL B-14911]
 gi|89088087|gb|EAR67198.1| replicative DNA helicase [Bacillus sp. NRRL B-14911]
          Length = 438

 Score = 39.4 bits (90), Expect = 0.96,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 51/148 (34%), Gaps = 7/148 (4%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
           G+  V +G   L+     GG+ +G ++ +    S GKT LA+    +     G       
Sbjct: 178 GLPGVDTGFETLNGL--TGGWKEGELIILAARPSMGKTALAIQLAWECASRNGISLVFSL 235

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA----ALTP 159
           E +   I+ ++L   L  + + +     + L + +M     A++ +    +      L  
Sbjct: 236 EMSAKQIF-QRLLCSLSGINMMKWHNPHKYLSMEEMGRMQEAMNSVYKAKLTVEENGLVT 294

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLT 187
             EI   +               +  L 
Sbjct: 295 LMEIRQHIMNLKREHPTEPFLVVIDYLQ 322


>gi|227546516|ref|ZP_03976565.1| DNA repair protein RadA [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|227213065|gb|EEI80944.1| DNA repair protein RadA [Bifidobacterium longum subsp. infantis
           ATCC 55813]
          Length = 438

 Score = 39.4 bits (90), Expect = 0.97,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 2/83 (2%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGTCAFV 101
           E +E + +G    D  LG GG   G +  I G    GK+TL L T     +   G   F 
Sbjct: 4   ESVERLGTGFSEFDRVLG-GGVVPGSVTLIAGEPGIGKSTLLLQTAGNIARVVAGDSTFR 62

Query: 102 DAEHALDSIYARKLGVDLKNLLI 124
            A         R  G     + +
Sbjct: 63  GAGQRSAQQSGRAQGNASNTVPM 85


>gi|239621513|ref|ZP_04664544.1| DNA repair protein RadA [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|312133913|ref|YP_004001252.1| sms2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|239515388|gb|EEQ55255.1| DNA repair protein RadA [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|311773207|gb|ADQ02695.1| SmS2 [Bifidobacterium longum subsp. longum BBMN68]
          Length = 438

 Score = 39.4 bits (90), Expect = 0.97,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 2/83 (2%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGTCAFV 101
           E +E + +G    D  LG GG   G +  I G    GK+TL L T     +   G   F 
Sbjct: 4   ESVERLGTGFSEFDRVLG-GGVVPGSVTLIAGEPGIGKSTLLLQTAGNIARVVAGDSTFR 62

Query: 102 DAEHALDSIYARKLGVDLKNLLI 124
            A         R  G     + +
Sbjct: 63  GAGQRSAQQSGRAQGNASNTVPM 85


>gi|153814782|ref|ZP_01967450.1| hypothetical protein RUMTOR_00997 [Ruminococcus torques ATCC 27756]
 gi|145847813|gb|EDK24731.1| hypothetical protein RUMTOR_00997 [Ruminococcus torques ATCC 27756]
          Length = 635

 Score = 39.4 bits (90), Expect = 0.97,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 82/240 (34%), Gaps = 17/240 (7%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG---TCAFVDAEHALDSIYARKLGVDLK 120
            P G++  I G    GKT LA+  IA     G        ++  + L       +   +K
Sbjct: 336 IPFGKVTLIQGNPGKGKTWLAM-AIAAYCTNGKELPNALPIEPFNVLYQTAEDGIADTIK 394

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM----GESLPGMQA 176
             L        +   I +   +    D  +  ++     R  I   +    G ++   +A
Sbjct: 395 PRLAKCGADMTRVRFINEEEKQLSMTDDRIEKAIRQNNVRLMIMDPIQAYLGSNVDMNRA 454

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
             +    R L++   R+ C +V I    +       S   + G   +       L + +V
Sbjct: 455 NEIRPLFRHLSTIAERTGCAIVLI--GHLNKSSGSQSDYRSLGSIDIAAAVRSILFVEKV 512

Query: 237 GSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
              K++D          V + K +   K+       GEG   +    D+ ++  ++ K+G
Sbjct: 513 EKEKEQDIRV-------VYQQKDSLAKKENPVAFSLGEGGLKWLGEYDISIEDLLMGKAG 565


>gi|145630998|ref|ZP_01786774.1| predicted repair protein [Haemophilus influenzae R3021]
 gi|144983465|gb|EDJ90941.1| predicted repair protein [Haemophilus influenzae R3021]
          Length = 120

 Score = 39.4 bits (90), Expect = 0.97,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
            +     SSG   LD  LG GG   G  + I G   +GK+TL L  + 
Sbjct: 69  LQETPRFSSGFNELDRVLG-GGVVPGSAILIGGHPGAGKSTLLLQVMC 115


>gi|23466169|ref|NP_696772.1| DNA repair protein RadA [Bifidobacterium longum NCC2705]
 gi|322689890|ref|YP_004209624.1| DNA repair protein [Bifidobacterium longum subsp. infantis 157F]
 gi|322691831|ref|YP_004221401.1| DNA repair protein [Bifidobacterium longum subsp. longum JCM 1217]
 gi|23326908|gb|AAN25408.1| alkylation damage repair protein [Bifidobacterium longum NCC2705]
 gi|320456687|dbj|BAJ67309.1| DNA repair protein [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320461226|dbj|BAJ71846.1| DNA repair protein [Bifidobacterium longum subsp. infantis 157F]
          Length = 512

 Score = 39.4 bits (90), Expect = 0.97,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 2/83 (2%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGTCAFV 101
           E +E + +G    D  LG GG   G +  I G    GK+TL L T     +   G   F 
Sbjct: 78  ESVERLGTGFSEFDRVLG-GGVVPGSVTLIAGEPGIGKSTLLLQTAGNIARVVAGDSTFR 136

Query: 102 DAEHALDSIYARKLGVDLKNLLI 124
            A         R  G     + +
Sbjct: 137 GAGQRSAQQSGRAQGNASNTVPM 159


>gi|251772079|gb|EES52649.1| DNA repair protein RadA [Leptospirillum ferrodiazotrophum]
          Length = 478

 Score = 39.1 bits (89), Expect = 0.98,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 13/126 (10%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
           G +   +   S+G    D  LG GG   G  + + G    GK+TL L T+A   +   T 
Sbjct: 66  GVVVGDLPRSSTGLSEFDRVLG-GGIVPGSFILLGGDPGIGKSTLVLQTVANLARE-KTV 123

Query: 99  AFVDAEHALDSIYARKLGVDLKNLLISQPDT------GEQALEITDMLVRSGAVDIIVID 152
             V  E +       ++ +    L   +  T       E  L +        + DI+++D
Sbjct: 124 LVVCGEES-----PEQIRMRFDRLEAGKKKTSGLFLLPETDLSLVLAEAARLSPDILIVD 178

Query: 153 SVAALT 158
           S+  + 
Sbjct: 179 SIQTVF 184


>gi|18873787|gb|AAL16371.1| KaiC [Nostoc linckia]
          Length = 209

 Score = 39.1 bits (89), Expect = 0.99,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 51/150 (34%), Gaps = 24/150 (16%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ----SQK 93
           +  +  G+E + +   G D  +  GG P  R   I G   +GKT L+L  +        +
Sbjct: 11  KPPLIVGVEKIRTMIEGFDD-ISHGGLPVSRTTLISGTSGTGKTLLSLQFLYNGITYFDE 69

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLIS------QPDTGEQALEI----------- 136
            G    F ++   +    A   G +L  L+              +  +I           
Sbjct: 70  PGVFVTFEESPSDIIKN-AHIFGWNLPRLIEEGKLFILDASPDPEGQDIVGNFDLSALIE 128

Query: 137 -TDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
                +R      + IDSV A+  + E  G
Sbjct: 129 RLQYAIRKYKAKRVSIDSVTAVFQQYEAMG 158


>gi|302349200|ref|YP_003816838.1| ATPase, RecA superfamily [Acidilobus saccharovorans 345-15]
 gi|302329612|gb|ADL19807.1| ATPase, RecA superfamily [Acidilobus saccharovorans 345-15]
          Length = 462

 Score = 39.1 bits (89), Expect = 0.99,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 43/120 (35%), Gaps = 15/120 (12%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH----- 105
           G  GLD      G P+G I+ + G   +GKTTLA     Q   +G    +V         
Sbjct: 15  GVPGLDDMFSE-GVPRGSIILVAGYPGAGKTTLASQFAYQGASSGEPSLYVSFVEPREDF 73

Query: 106 ---------ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
                        +  R L    + L +S P+     +E       S     +VIDSV A
Sbjct: 74  MANALQFNMDFRPLEGRGLFRYYEALSVSDPEALGDVVEDVLSQADSMGAKRVVIDSVTA 133


>gi|255632274|gb|ACU16495.1| unknown [Glycine max]
          Length = 160

 Score = 39.1 bits (89), Expect = 0.99,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 8/91 (8%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLG-LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           I+ L S+ S  E      +  +G LD  LG GG     + EI G    GKT + +     
Sbjct: 49  ILNLASKPSALERPNGSHTAVVGDLDNILG-GGIKCKEVTEIGGVPGIGKTQIGIQLAVN 107

Query: 91  SQ------KTGGTCAFVDAEHALDSIYARKL 115
            Q        GG   ++D E +       ++
Sbjct: 108 VQIPQEYGGLGGKAIYIDTEGSFMVERVLQI 138


>gi|305664036|ref|YP_003860324.1| flagellar accessory protein FlaH [Ignisphaera aggregans DSM 17230]
 gi|304378605|gb|ADM28444.1| flagellar accessory protein FlaH [Ignisphaera aggregans DSM 17230]
          Length = 238

 Score = 39.1 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 1/79 (1%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
              +EV+S+ +  LD  LG GG P   ++ I G   +GK+         + K G    +V
Sbjct: 3   RPRVEVISTANEELDNRLG-GGIPIPSLLLIEGDHGTGKSVFVQQIAYGALKEGLKVFYV 61

Query: 102 DAEHALDSIYARKLGVDLK 120
             E  +     +   V + 
Sbjct: 62  TTESTVREFILQTKRVSID 80


>gi|317407064|gb|EFV87079.1| hypothetical protein HMPREF0005_05821 [Achromobacter xylosoxidans
           C54]
          Length = 175

 Score = 39.1 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 2/105 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVE-IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
            + +G   L   L  GG+P G ++E +      G+  L L       +T    A V   H
Sbjct: 24  SLPTGHPTLSAELPDGGWPLGSLIELLVPQPGIGEIRL-LRPALAQLETRRPIALVQPPH 82

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           A          +D + LL   P+    AL   + ++++G+   ++
Sbjct: 83  APHIASWMSWRLDPRQLLWVAPEKPLDALWAAEQILKNGSCGALL 127


>gi|330867024|gb|EGH01733.1| hypothetical protein PSYAE_07152 [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 120

 Score = 39.1 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 10/118 (8%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI-Y 73
           +L+A L   +R   KG       +      +    SG   LD AL  GG+P   + EI  
Sbjct: 6   SLDALLD--ERRVWKG-------RQQSAPQVSPHPSGHALLDSALPTGGWPAAALTEILI 56

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
               SG+  L   ++A+    G     V   +          GVDL+ L++ +    +
Sbjct: 57  PANGSGELRLLWPSLARLSAIGERIVLVAPPYIPYPQAWLAAGVDLRQLVVIEAGPRD 114


>gi|309390326|gb|ADO78206.1| DnaB domain protein helicase domain protein [Halanaerobium
           praevalens DSM 2228]
          Length = 460

 Score = 39.1 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 65/193 (33%), Gaps = 26/193 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +G + LD    IGGF +G +  I    S GKT  A++      K     A +  E   
Sbjct: 186 LRTGFISLDNL--IGGFKRGHLTVIAASTSMGKTAFAINMAKNVLKRKAKVAIMSLEMDA 243

Query: 108 DSIYARKL--GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP------ 159
             +  R +     +     +Q +T E+  +     + +     ++I     L        
Sbjct: 244 TEVVDRMIVQEAQVNAWKYTQGETNEEEDQRVSKALDNLHELPLMISDERGLNTAQIRAR 303

Query: 160 ----RAEIEG------------DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
               +A+++G             + E      +R + Q + +L +  S     ++ I+Q+
Sbjct: 304 LRKFKAQMDGLDLAVVDYLQMIQLPEEHAQNTSRAVGQIVLQLRNLASELDIPVILISQI 363

Query: 204 RMKIGVMFGSPET 216
                        
Sbjct: 364 SRSFTSRQDKRPV 376


>gi|182417634|ref|ZP_02948953.1| replicative DNA helicase [Clostridium butyricum 5521]
 gi|237667822|ref|ZP_04527806.1| replicative DNA helicase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182378358|gb|EDT75889.1| replicative DNA helicase [Clostridium butyricum 5521]
 gi|237656170|gb|EEP53726.1| replicative DNA helicase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 434

 Score = 39.1 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 54/157 (34%), Gaps = 18/157 (11%)

Query: 16  LEAALSQI--QRVYGKGAIMQ-----------LGSQGSIFEGIEVVSSGSLGLDIALGIG 62
           +  A+  I   +  GK  IM+           +  +      I  + SG +  D    IG
Sbjct: 134 ITDAMVNILLNKNLGKSNIMRDNELFEATLLEIDRRLKSSGEIPGMKSGLVSFDK--NIG 191

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G  KG +  I G  S GKT  AL+ I    K G      + E   +S+  R+L  +    
Sbjct: 192 GLNKGELNVIAGRPSMGKTLFALNLIDGLGKNGYKAFLCELEMTAESLGMRRLSSNSTVE 251

Query: 123 LISQPD---TGEQALEITDMLVRSGAVDIIVIDSVAA 156
           +        + ++ L +          D +  D    
Sbjct: 252 VEKMKFGMLSDDEILSLFKTCEDMSKRDNLFTDCSPG 288


>gi|17233290|ref|NP_490380.1| replicative DNA helicase [Nostoc sp. PCC 7120]
 gi|17135812|dbj|BAB78358.1| replicative DNA helicase [Nostoc sp. PCC 7120]
          Length = 454

 Score = 39.1 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 2/74 (2%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-GGTCAFVDAE 104
             + +G   LD  LG GG  KGR+  +    S GK+ LA +      +      A    E
Sbjct: 188 PALPTGFYDLDTLLG-GGLRKGRLYVLAARPSVGKSALAGNIALHIARNSRKLVAIFSVE 246

Query: 105 HALDSIYARKLGVD 118
              D    R L  +
Sbjct: 247 MTTDEYVQRFLSSE 260


>gi|327541263|gb|EGF27807.1| hypothetical protein RBWH47_03747 [Rhodopirellula baltica WH47]
          Length = 330

 Score = 39.1 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 37/112 (33%), Gaps = 13/112 (11%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVE-IYGPESSGKTTLALHTIAQS-------- 91
             +     S+GS  LD  L  GG  +G I E I   E  G  TL+L   AQ         
Sbjct: 18  ATDSTPRFSTGSSVLDSWLPGGGMRRGTINEWIAETEGGGAGTLSLLAAAQILGTANQPH 77

Query: 92  ----QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
                   G    VD      +  A   G+  + ++  +      A+   D 
Sbjct: 78  PPAHAHHDGPVIVVDPGGHFYAPAAIACGIPAERIVWCRVTNRRDAVWTLDQ 129


>gi|90581524|ref|ZP_01237317.1| putative DNA repair protein radA [Vibrio angustum S14]
 gi|90437286|gb|EAS62484.1| putative DNA repair protein radA [Vibrio angustum S14]
          Length = 464

 Score = 39.1 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 56/156 (35%), Gaps = 15/156 (9%)

Query: 39  GSIFEGIEVVS-----SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
                 +E V      +G   LD  L  GG   G +  I G   +GKTTL L  +     
Sbjct: 66  SKKLNEVETVEAEKMLTGIGELDRVL-CGGLTTGSVNIISGDPGAGKTTL-LSDLVSRMS 123

Query: 94  TGGTCAFVDAEHALDSIYAR----KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
                 +  AE +L     R    KL  +  NL +    + E  +   ++      +   
Sbjct: 124 QLMPSLYCTAEESLSQFKNRVNRLKLNCNEDNLYLMAETSVEAIIAELEV----KQIKFA 179

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           VIDS+ A++           S     A+ ++Q  ++
Sbjct: 180 VIDSIQAVSTELANGSPGSPSQVKAAAQALTQYCKQ 215


>gi|18314018|ref|NP_560685.1| hypothetical protein PAE3364 [Pyrobaculum aerophilum str. IM2]
 gi|18161595|gb|AAL64867.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
          Length = 281

 Score = 39.1 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 77/262 (29%), Gaps = 25/262 (9%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ----SQKTGGTCAFVDAE 104
            +G   +D  L  GGF KG I  + G    GKT  +L  +        + G      +  
Sbjct: 23  PTGIWYIDQLL-QGGFRKGEIYLVAGEAGQGKTIFSLQFLKTGAELYDEPGLYITIDEPS 81

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164
             +       LG DL  L           L++          + +  D         E  
Sbjct: 82  EDVKRGVRESLGWDLDALESQNKLVF---LDLRTHFRTYAKEEKVTADPREIAKIIMEYV 138

Query: 165 GDMG-ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
              G + L       +          +      LVF  +    I  +  + E  TG N +
Sbjct: 139 KKFGIKRLVIDPIAPLIITSHTDVLWVREYMRELVFQLRKMKDITTLM-TSEIPTGENKI 197

Query: 224 KFYSSVRLDIRRVGSIK-DKDSITGNQTRVKVVKNKMASPFKQ----VEFDIMYGEGISF 278
             +     +    G IK +     G   RV  ++    +  +      E    YG     
Sbjct: 198 SRFGVE--EYLASGVIKLELMEYRGFVFRVMFIRKMRWTAVRPQKLVFEIYPHYG----- 250

Query: 279 FGELIDLGVKASIVDKSGAWFS 300
              +  L    + + +  AW++
Sbjct: 251 ---IYILDRLENFMKQIDAWYA 269


>gi|89072599|ref|ZP_01159171.1| putative DNA repair protein radA (DNA repair protein sms)
           [Photobacterium sp. SKA34]
 gi|89051703|gb|EAR57156.1| putative DNA repair protein radA (DNA repair protein sms)
           [Photobacterium sp. SKA34]
          Length = 464

 Score = 39.1 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 56/156 (35%), Gaps = 15/156 (9%)

Query: 39  GSIFEGIEVVS-----SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
                 +E V      +G   LD  L  GG   G +  I G   +GKTTL L  +     
Sbjct: 66  SKKLNEVETVEAEKMLTGIGELDRVL-CGGLTTGSVNIISGDPGAGKTTL-LSDLVSRMS 123

Query: 94  TGGTCAFVDAEHALDSIYAR----KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
                 +  AE +L     R    KL  +  NL +    + E  +   ++      +   
Sbjct: 124 QLMPSLYCTAEESLSQFKNRVNRLKLNCNEDNLYLMAETSVEAIIAELEV----KQIKFA 179

Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185
           VIDS+ A++           S     A+ ++Q  ++
Sbjct: 180 VIDSIQAVSTELANGSPGSPSQVKAAAQALTQYCKQ 215


>gi|209946346|gb|ACI97404.1| spindle B [Drosophila simulans]
          Length = 341

 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 75/238 (31%), Gaps = 25/238 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI------AQSQKTGGTCA 99
             VS G   LD   G GG     I E+ G    GKT L L          +    G   A
Sbjct: 86  SRVSFGCSALDRCTG-GGVVTRGITELCGAAGVGKTQLLLQLCLCVQLPRELGGLGKGVA 144

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           ++  E +  +    ++    +             + + +  + +  +   VI+ +  L  
Sbjct: 145 YICTESSFPARRLLQMSKACEKRHPQMELNFLGNIFV-ENHIEAEPLLACVINRIPRLMQ 203

Query: 160 RAEIEGDMGESLPGM---------QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           +  I   + +S+  +             M +      S   +  C +V +NQ+  + G  
Sbjct: 204 QHGIGLIIIDSVAAIFRLYNXYLXXXXXMRRXXXXXXSYADKYNCAVVCVNQVATRDG-- 261

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268
               E    G         RL + RV     K    G+Q         + SP    +F
Sbjct: 262 --QDEIPCLGLQWAHLGRTRLRVSRVP----KQHRMGDQLITVRKLEILYSPETPNDF 313


>gi|296159751|ref|ZP_06842573.1| putative circadian clock protein, KaiC [Burkholderia sp. Ch1-1]
 gi|295889965|gb|EFG69761.1| putative circadian clock protein, KaiC [Burkholderia sp. Ch1-1]
          Length = 505

 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 3/80 (3%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ--SQKTGGTCAFVDAE 104
            +SSG  G+D  LG GG    R+  + G   +GKTTLAL  + +   +  GG    +   
Sbjct: 12  RLSSGIEGIDDILG-GGLTPHRMYLVEGAPGTGKTTLALQFLLKGVEEGQGGLYITLSET 70

Query: 105 HALDSIYARKLGVDLKNLLI 124
            +     A   G D+    +
Sbjct: 71  RSELIAVAESHGWDISRFTV 90


>gi|18873784|gb|AAL16369.1| KaiC [Nostoc linckia]
 gi|18873791|gb|AAL16374.1| KaiC [Nostoc linckia]
 gi|18873794|gb|AAL16376.1| KaiC [Nostoc linckia]
          Length = 209

 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 24/150 (16%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ----SQK 93
           +  +  G+E + +   G D  +  GG P  R   I G   +GKT L+L  +        +
Sbjct: 11  KPPLIVGVEKIRTMIEGFDD-ISHGGLPVSRTTLISGTSGTGKTLLSLQFLYNGITYFDE 69

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLIS------QPDTGEQALEI----------- 136
            G    F ++   +    A   G +L  L+              +  +I           
Sbjct: 70  PGVFVTFEESPSDIIKN-AHIFGWNLPRLIEEGKLFILDASPDPEGQDIVGNFDLSALIE 128

Query: 137 -TDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
                +R      + IDS+ A+  + E  G
Sbjct: 129 RLQYAIRKYKAKRVSIDSITAVFQQYEAMG 158


>gi|42518491|ref|NP_964421.1| DNA repair protein RadA [Lactobacillus johnsonii NCC 533]
 gi|41582776|gb|AAS08387.1| DNA repair protein RadA-like protein [Lactobacillus johnsonii NCC
           533]
 gi|329666762|gb|AEB92710.1| DNA repair protein RadA-like protein [Lactobacillus johnsonii DPC
           6026]
          Length = 459

 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 10/119 (8%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E  + + +    L+  LG GG   G +V I G    GK+TL L        TG       
Sbjct: 70  EKEKRIVTPFEELNRVLG-GGIVPGSLVLIGGDPGIGKSTLMLQI------TGALAKEHS 122

Query: 103 AEHALDSIYARKLGVDLKNLLISQPD---TGEQALEITDMLVRSGAVDIIVIDSVAALT 158
             +      A ++ +    L +S        E  ++     +     D +VIDS+  + 
Sbjct: 123 VLYVSGEESASQIKMRADRLGVSNSGILLYPETNMQNIRDQIDEIKPDFLVIDSIQTMN 181


>gi|21226516|ref|NP_632438.1| flagellar accessory protein FlaH [Methanosarcina mazei Go1]
 gi|20904784|gb|AAM30110.1| flagella related protein FlaH [Methanosarcina mazei Go1]
          Length = 264

 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 47/131 (35%), Gaps = 18/131 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +SSG+L +D  L  GG P G +  + G   SGK+      I  +     T  F+  E   
Sbjct: 37  ISSGNLEIDRRL-EGGIPAGSLCLLEGANDSGKSIFLQQIIWGALNQDKTVLFLTTEKTS 95

Query: 108 DSIY--ARKLGVDLKNLLIS---------------QPDTGEQALEITDMLVRSGAVDIIV 150
             +      L   + +  I                 P   E  L++    ++    ++++
Sbjct: 96  KEVLNQMESLKRGISDYFIIGRSKIFEINAGYVEENPRLSESLLQVLLECIQRCEEELVL 155

Query: 151 IDSVAALTPRA 161
           IDS+      A
Sbjct: 156 IDSLTIFAVNA 166


>gi|209549637|ref|YP_002281554.1| non-specific serine/threonine protein kinase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209535393|gb|ACI55328.1| Non-specific serine/threonine protein kinase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 503

 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +G  GLD  L  GG   G +  + G   +GKTT+AL  + +  + G    ++       
Sbjct: 11  RTGVSGLDTILA-GGLSTGHVFLLEGNPGAGKTTIALQFLIEGARLGERGLYITLSETES 69

Query: 109 SIYARKLG 116
            + A    
Sbjct: 70  ELRAGAAS 77


>gi|192291933|ref|YP_001992538.1| ATPase MipZ [Rhodopseudomonas palustris TIE-1]
 gi|192285682|gb|ACF02063.1| ATPase MipZ [Rhodopseudomonas palustris TIE-1]
          Length = 307

 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 57/187 (30%), Gaps = 11/187 (5%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
            SGK+TLALH      K G   A +D +    S           +            LE+
Sbjct: 24  GSGKSTLALHITVALMKAGQRVATIDLDCRQRSFTRYIANRQAWS------QHARLDLEL 77

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS-RSKC 195
            D    +    + V D+ AA   +        E            +   L       +  
Sbjct: 78  PDHCCLTLGETMQVADNEAAEFQQFADAVAAVEHDHDFIVVDTPGSDSYLMRLAHSMADT 137

Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS----ITGNQTR 251
           ++  IN   +   V+ G   TT        Y+++ +D RR     D       +  N+  
Sbjct: 138 LVTPINDSFLDFDVLGGVDPTTFEVTGASHYAAMVIDARRRRRQLDGSDTDWIVVRNRLS 197

Query: 252 VKVVKNK 258
               +N 
Sbjct: 198 TIGARNN 204


>gi|289582539|ref|YP_003481005.1| KaiA binding protein [Natrialba magadii ATCC 43099]
 gi|289532092|gb|ADD06443.1| KaiA binding protein [Natrialba magadii ATCC 43099]
          Length = 236

 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + SG  G D  +  GG  K R+  + GP  SGKTT       +    G T  F+
Sbjct: 2   RIPSGVPGFDELIS-GGLLKDRLYVVSGPPGSGKTTFCSQFATKGAIDGETTLFL 55


>gi|262199876|ref|YP_003271085.1| circadian clock protein, KaiC [Haliangium ochraceum DSM 14365]
 gi|262083223|gb|ACY19192.1| putative circadian clock protein, KaiC [Haliangium ochraceum DSM
           14365]
          Length = 474

 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 50/130 (38%), Gaps = 13/130 (10%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99
              + +E  S G+ GLD   G GG+ +  IV + GP  SGKT L+               
Sbjct: 244 KDVQRMERFSCGTKGLDEMTG-GGWLRDSIVLVRGPTGSGKTILSGMYACAGAARDERVF 302

Query: 100 FVDAEHALDSIYA--RKLGVDLKNL----------LISQPDTGEQALEITDMLVRSGAVD 147
           +   E     +    + LG+ +K               +  + E  +     ++      
Sbjct: 303 YYGFEETESMLLRNYQALGLPVKKYVDEGKIRLIARFPEATSPEDMIIELRSVLDQHKPT 362

Query: 148 IIVIDSVAAL 157
           +IVIDS++A+
Sbjct: 363 LIVIDSISAI 372


>gi|331674511|ref|ZP_08375271.1| replicative DNA helicase [Escherichia coli TA280]
 gi|331068605|gb|EGI40000.1| replicative DNA helicase [Escherichia coli TA280]
          Length = 491

 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 15/92 (16%)

Query: 3   YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
             +E      S AL+  L Q++ V G G             G+    +G   LD      
Sbjct: 187 TLRERTEASLSSALDTVLQQLESVLGSG-------------GVTGTPTGFDCLDEM--TC 231

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           G   G +V +    S GKT+LAL     + + 
Sbjct: 232 GLQPGDLVLLAARPSMGKTSLALSMCLSAARR 263


>gi|157156805|ref|YP_001464372.1| DnaB family helicase [Escherichia coli E24377A]
 gi|157078835|gb|ABV18543.1| helicase, DnaB family [Escherichia coli E24377A]
          Length = 455

 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 15/92 (16%)

Query: 3   YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
             +E      S AL+  L Q++ V G G             G+    +G   LD      
Sbjct: 151 TLRERTEASLSSALDTVLQQLESVLGSG-------------GVTGTPTGFDCLDEM--TC 195

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           G   G +V +    S GKT+LAL     + + 
Sbjct: 196 GLQPGDLVLLAARPSMGKTSLALSMCLSAARR 227


>gi|221195123|ref|ZP_03568179.1| replicative DNA helicase [Atopobium rimae ATCC 49626]
 gi|221185026|gb|EEE17417.1| replicative DNA helicase [Atopobium rimae ATCC 49626]
          Length = 485

 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +L    +  E    V +G   +D AL   G   G+++ +      GKT+ AL+   Q+  
Sbjct: 189 ELAENANKSETELGVETGFPSVDAALL--GLRPGQMIVVGARPGVGKTSFALNLAVQAAA 246

Query: 94  TGGTCAFVDAE 104
            G + AF   E
Sbjct: 247 KGASVAFFSLE 257


>gi|160945855|ref|ZP_02093081.1| hypothetical protein FAEPRAM212_03388 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443586|gb|EDP20591.1| hypothetical protein FAEPRAM212_03388 [Faecalibacterium prausnitzii
           M21/2]
          Length = 621

 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 82/232 (35%), Gaps = 15/232 (6%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKLGVDLKN 121
            P G++  + G    GKT  A+H  A              E    +       LG  +K 
Sbjct: 325 LPFGKLSVLQGNPGEGKTYFAMHLAAACTNGKLLPNMERMEPFNVIYQTAEDGLGDTVKP 384

Query: 122 LLISQPDTGEQALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
            LI      ++ L I D  V+    D      +I++ A L     I+  +G  +   +A 
Sbjct: 385 RLIEAGADLDRVLVIDDSDVQLTLSDERIEKAIIENNAKLVIIDPIQAYLGADVDMNRAN 444

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
            +     +L     R+ C ++ I  +    G+         G  ++   ++VR  +  +G
Sbjct: 445 EVRPIFMRLGQVAQRTGCAILLIGHLNKAAGMQSLQR----GLGSIDIAAAVRSVMF-IG 499

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
            +K   ++      +   K+ +A P   + F +    G  + GE      + 
Sbjct: 500 KLKHDPTM----RILTHEKSSLAPPGASLAFSLGDEGGFRWVGEYDITADEM 547


>gi|116071496|ref|ZP_01468764.1| DNA repair protein RadA [Synechococcus sp. BL107]
 gi|116065119|gb|EAU70877.1| DNA repair protein RadA [Synechococcus sp. BL107]
          Length = 402

 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 8/118 (6%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + ++ + +GS   D  LG G  P G +V + G    GK+TL L + +       +  +V 
Sbjct: 7   QPLQRLQTGSTEFDRVLGSGLVP-GSLVLVGGDPGIGKSTLLLQSASAMAAH-SSVLYVS 64

Query: 103 AEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           AE +   +    ++L  +  +L +      +  LE  + L       + +IDS+ AL 
Sbjct: 65  AEESAQQVKLRWQRLAGETSDLQLLAETDLDLVLEELEAL----RPAVAIIDSIQALH 118


>gi|320160094|ref|YP_004173318.1| replicative DNA helicase [Anaerolinea thermophila UNI-1]
 gi|319993947|dbj|BAJ62718.1| replicative DNA helicase [Anaerolinea thermophila UNI-1]
          Length = 457

 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 9/127 (7%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT- 97
               + I  V +G + LD  L  GG  K  ++ + G    GKT   L  +  + +     
Sbjct: 184 SQRSDEIMGVPTGLVDLDRLL--GGLQKSDLLIVAGRPGMGKTGFMLSVMKNAAQKYKKH 241

Query: 98  ----CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
                  +  E  +  + A++ G+D + L   + +  E    I  + V S     I +D 
Sbjct: 242 VAMFSLEMSNEQLVQRLIAQETGIDTQRLRTGKLNEDEWPRFIHAIEVLSETH--IFLDD 299

Query: 154 VAALTPR 160
             A+TP 
Sbjct: 300 TPAITPM 306


>gi|254586119|ref|XP_002498627.1| ZYRO0G14872p [Zygosaccharomyces rouxii]
 gi|238941521|emb|CAR29694.1| ZYRO0G14872p [Zygosaccharomyces rouxii]
          Length = 355

 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
          M +G   S       +S+G   LD +L  GGF  G I EIYGP  S K  L
Sbjct: 1  MDIGIPLSQLASQHPISTGCEPLDSSL-EGGFKPGCIYEIYGPPGSCKEIL 50


>gi|15835188|ref|NP_296947.1| DNA repair protein RadA [Chlamydia muridarum Nigg]
 gi|7190610|gb|AAF39407.1| DNA repair protein [Chlamydia muridarum Nigg]
          Length = 494

 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+ S G +  LG GG   G +  + G    GK+TL L   +Q  + G    +V  E +
Sbjct: 108 RISTRSKGWNRLLG-GGTVCGSLTLLGGEPGIGKSTLLLQISSQFAEQGYKVLYVCGEES 166

Query: 107 LDSIYARKLGVDLKN 121
           +     R   + + +
Sbjct: 167 VSQTSLRAQRLQISS 181


>gi|270285360|ref|ZP_06194754.1| DNA repair protein RadA [Chlamydia muridarum Nigg]
 gi|270289376|ref|ZP_06195678.1| DNA repair protein RadA [Chlamydia muridarum Weiss]
 gi|301336757|ref|ZP_07224959.1| DNA repair protein RadA [Chlamydia muridarum MopnTet14]
 gi|14195101|sp|Q9PK96|RADA_CHLMU RecName: Full=DNA repair protein RadA homolog; AltName: Full=DNA
           repair protein Sms homolog
          Length = 455

 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            +S+ S G +  LG GG   G +  + G    GK+TL L   +Q  + G    +V  E +
Sbjct: 69  RISTRSKGWNRLLG-GGTVCGSLTLLGGEPGIGKSTLLLQISSQFAEQGYKVLYVCGEES 127

Query: 107 LDSIYARKLGVDLKN 121
           +     R   + + +
Sbjct: 128 VSQTSLRAQRLQISS 142


>gi|281704354|gb|ADA77122.1| disrupted meiotic cDNA 1 [Bromus intermedius]
          Length = 115

 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 6/101 (5%)

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
               +      ++++DSV AL          G      + + ++Q L +LT         
Sbjct: 12  LAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAERQQKLAQMLSRLTKIAEEFNVA 67

Query: 197 LVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRR 235
           +   NQ+    G       P+   GG+ L   +++RL +R+
Sbjct: 68  VYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLRK 108


>gi|71663686|ref|XP_818833.1| DNA repair protein [Trypanosoma cruzi strain CL Brener]
 gi|70884105|gb|EAN96982.1| DNA repair protein, putative [Trypanosoma cruzi]
          Length = 344

 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 11/55 (20%)

Query: 48 VSSGSLGLDIALG-----------IGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           ++G   LD  L             GGF  G + E+YG   SGKT L L ++   
Sbjct: 40 FTTGCPSLDHLLSGGNGALAKDASDGGFRAGFVSEVYGEAGSGKTQLVLQSLLHC 94


>gi|71407982|ref|XP_806422.1| DNA repair protein [Trypanosoma cruzi strain CL Brener]
 gi|70870167|gb|EAN84571.1| DNA repair protein, putative [Trypanosoma cruzi]
          Length = 453

 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 11/55 (20%)

Query: 48  VSSGSLGLDIALG-----------IGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
            ++G   LD  L             GGF  G + E+YG   SGKT L L ++   
Sbjct: 149 FTTGCPSLDHLLSGGNGALAKDASDGGFRAGFVSEVYGEAGSGKTQLVLQSLLHC 203


>gi|311743338|ref|ZP_07717145.1| DNA repair protein RadA [Aeromicrobium marinum DSM 15272]
 gi|311313406|gb|EFQ83316.1| DNA repair protein RadA [Aeromicrobium marinum DSM 15272]
          Length = 461

 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 48/139 (34%), Gaps = 3/139 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
             E    V SG   LD  LG GG   G ++ + G    GK+TL L   A+  + G    +
Sbjct: 63  AVEAARAVGSGIGELDRVLG-GGVVPGAVLLMAGEPGVGKSTLLLEVAARWARAGRRTLY 121

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E +   +  R        +        E  L      V   A  ++V+DSV  +   
Sbjct: 122 VTGEESAAQVRLRA--ERTGAVTDELYLAAETDLGALLTHVDQVAPSLLVVDSVQTIGSA 179

Query: 161 AEIEGDMGESLPGMQARLM 179
                  G +     A  +
Sbjct: 180 DVDGVPGGVTQVREVAAAV 198


>gi|213693047|ref|YP_002323633.1| DNA repair protein RadA [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|213524508|gb|ACJ53255.1| DNA repair protein RadA [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320459224|dbj|BAJ69845.1| DNA repair protein [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 512

 Score = 39.1 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           E +E + +G    D  LG GG   G +  I G    GK+TL L T     +
Sbjct: 78  ESVERLGTGFFEFDRVLG-GGVVPGSVTLIAGEPGIGKSTLLLQTAGNIAR 127


>gi|323143713|ref|ZP_08078383.1| hypothetical protein HMPREF9444_01014 [Succinatimonas hippei YIT
           12066]
 gi|322416516|gb|EFY07180.1| hypothetical protein HMPREF9444_01014 [Succinatimonas hippei YIT
           12066]
          Length = 332

 Score = 39.1 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 82/233 (35%), Gaps = 25/233 (10%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P G++  + G    GKTTL L  IA+    G      D +       +    V  +   
Sbjct: 33  IPYGKVTIVQGDPGEGKTTLLLQIIARL-TLGRNVFDSDEKSQFAIKSSEPQQVIYQTAE 91

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE---------------IEGDMG 168
               DT +  L       R   V       ++ L  R E               I+G +G
Sbjct: 92  DGLGDTIKPRLIAAGADCRYVNVIDESDMPLSMLDERLEAAIVKTKARLVVLDPIQGYIG 151

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228
            +    +A  +   +++++    +  C +V I  M               G  ++   ++
Sbjct: 152 SNTDMHKANEIRPIMKRISIIAQKYNCAIVLIGHMNKNSSRKSSYR----GLGSIDIVAA 207

Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE 281
            R  +  VG IKDK  +      V  VK+ +A   K + F++   EG  + GE
Sbjct: 208 AR-SVLLVGRIKDKPEL----RVVCHVKSSLAPEGKSLCFELSKNEGFIWRGE 255


>gi|296127622|ref|YP_003634874.1| DNA repair protein RadA [Brachyspira murdochii DSM 12563]
 gi|296019438|gb|ADG72675.1| DNA repair protein RadA [Brachyspira murdochii DSM 12563]
          Length = 460

 Score = 39.1 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
                +S+    L+  LG GG   G ++ I G    GK+TL L T +          +  
Sbjct: 70  NESARISTNIDELNRVLG-GGIVSGSVILIGGEPGIGKSTLLLQTASNIA-KNEKVYYFT 127

Query: 103 AEHALDSIYARKLGVDLKN 121
            E +++ I  R   + L++
Sbjct: 128 GEESIEQIKLRADRLILED 146


>gi|328724383|ref|XP_003248130.1| PREDICTED: probable general secretion pathway protein E-like
           [Acyrthosiphon pisum]
          Length = 491

 Score = 39.1 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            KA++  +S I   YG+  +M+L  + ++   I  +      L+   G+   P G I+ +
Sbjct: 182 RKAIDVRVSTIPSQYGERVVMRLLDKSNLKPDINKLGLIDEELEKLKGLIDRPHG-IILV 240

Query: 73  YGPESSGKTT 82
            GP  SGK+T
Sbjct: 241 TGPTGSGKST 250


>gi|322821653|gb|EFZ27917.1| DNA repair protein, putative [Trypanosoma cruzi]
          Length = 450

 Score = 39.1 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 11/55 (20%)

Query: 48  VSSGSLGLDIALG-----------IGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
            ++G   LD  L             GGF  G + E+YG   SGKT L L ++   
Sbjct: 146 FTTGCPSLDHLLSGGNGALAKDASNGGFRAGFVSEVYGEAGSGKTQLVLQSLLHC 200


>gi|18976475|ref|NP_577832.1| hypothetical protein PF0103 [Pyrococcus furiosus DSM 3638]
 gi|18892018|gb|AAL80227.1| hypothetical protein PF0103 [Pyrococcus furiosus DSM 3638]
          Length = 161

 Score = 39.1 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 8/118 (6%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG--TCAFVD 102
           +E + +G +     L  GG P+G +V + G   +GK+       +   + G       +D
Sbjct: 16  VERIPTGII---DDLISGGIPRGSVVLLIGDPKAGKSIFISQFTSTQVRNGNYVIGVLID 72

Query: 103 AEHALDSIYARKLGVDLKNLLISQP---DTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
                    A   G +    L  +    D   Q L          +V   + D+   L
Sbjct: 73  ISKYEFVSNALDFGWEFMPYLDDKIVLLDAYTQRLRKAPKFSFDESVITDISDTTRLL 130


>gi|170696622|ref|ZP_02887742.1| conserved hypothetical protein [Burkholderia graminis C4D1M]
 gi|170138488|gb|EDT06696.1| conserved hypothetical protein [Burkholderia graminis C4D1M]
          Length = 279

 Score = 39.1 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 9/135 (6%)

Query: 21  SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE-IYGPESSG 79
           SQ++R       M  G++ +  +   VV SG   LD  L   G+P G + E +     +G
Sbjct: 14  SQLRRQ------MWQGNELAEVDS-RVVPSGHTALDRVLPGRGWPAGGVTELLVEHWGAG 66

Query: 80  K-TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138
           +   LA      +++ G     V       +   +  G+D++ +L  + +  +     T 
Sbjct: 67  EMRLLAYALGHLTKQAGRHVMLVAPPFQPSAAALKAWGIDVERVLWVRSNEDKALWAATQ 126

Query: 139 MLVRSGAVDIIVIDS 153
            L + G   ++V  S
Sbjct: 127 ALKQDGIGAVLVWLS 141


>gi|237844773|ref|XP_002371684.1| DNA repair protein recA , putative [Toxoplasma gondii ME49]
 gi|211969348|gb|EEB04544.1| DNA repair protein recA , putative [Toxoplasma gondii ME49]
          Length = 481

 Score = 39.1 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
           +  G   +D  L  GG P+G +VEI G    GKT  AL  +A++    G
Sbjct: 97  LPVGCRAVDHHLN-GGVPRGMLVEISGKAGCGKTQFALSLVAETLLRSG 144


>gi|171185971|ref|YP_001794890.1| putative circadian clock protein, KaiC [Thermoproteus neutrophilus
           V24Sta]
 gi|170935183|gb|ACB40444.1| putative circadian clock protein, KaiC [Thermoproteus neutrophilus
           V24Sta]
          Length = 281

 Score = 39.1 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 5/78 (6%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA----QSQKTGGTCAFVDAE 104
            +G   +D  L  GGF KG I  + G    GKT  +L  +        + G      +  
Sbjct: 23  PTGIWYVDQLL-QGGFRKGEIYLVAGEAGQGKTIFSLQFLKTGAEMYDEPGLYITIDEPS 81

Query: 105 HALDSIYARKLGVDLKNL 122
             +       LG DL  L
Sbjct: 82  EDVKRGVRESLGWDLDAL 99


>gi|95007493|emb|CAJ20717.1| hypothetical protein TgIb.2420 [Toxoplasma gondii RH]
 gi|221480871|gb|EEE19292.1| X-ray repair cross complementing protein 3, xrcc3, putative
           [Toxoplasma gondii GT1]
 gi|221501606|gb|EEE27376.1| X-ray repair cross complementing protein 3, xrcc3, putative
           [Toxoplasma gondii VEG]
          Length = 481

 Score = 39.1 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
           +  G   +D  L  GG P+G +VEI G    GKT  AL  +A++    G
Sbjct: 97  LPVGCRAVDHHLN-GGVPRGMLVEISGKAGCGKTQFALSLVAETLLRSG 144


>gi|32266090|ref|NP_860122.1| DNA repair protein RadA [Helicobacter hepaticus ATCC 51449]
 gi|32262139|gb|AAP77188.1| Predicted ATP-dependent serine protease (Sms family) [Helicobacter
           hepaticus ATCC 51449]
          Length = 448

 Score = 39.1 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 51/151 (33%), Gaps = 4/151 (2%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-QKTGGTCAF 100
           FE IE  SS    LDI LG GG   G +  I G    GK+TL L    +  +       +
Sbjct: 65  FENIERFSSFEEELDIVLG-GGIVPGGLYLIGGSPGVGKSTLLLKIAGEIAKHIHKKVLY 123

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E +   I  R     L  +        E  L I    +      + VIDS+  +   
Sbjct: 124 VSGEESAGQIKMRA--SRLGAISEDLFLLNEIDLNIIQNALDEQQYALCVIDSIQTIYSP 181

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
                    S        + +  ++   SI 
Sbjct: 182 DITSAPGSISQVREVTFALMRLAKERNISIF 212


>gi|312111950|ref|YP_003990266.1| DnaB domain protein helicase [Geobacillus sp. Y4.1MC1]
 gi|311217051|gb|ADP75655.1| DnaB domain protein helicase domain protein [Geobacillus sp.
           Y4.1MC1]
          Length = 441

 Score = 39.1 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V +G + L+    IGGF K  ++ I G  S+GKT  AL+      K GG       E + 
Sbjct: 172 VDTGLIDLNRL--IGGFQKNDLIIIAGRPSTGKTAFALNIAMNHLKNGGVVDLFSLEMSE 229

Query: 108 DSIYARKLG 116
           D +  R L 
Sbjct: 230 DQLLKRMLS 238


>gi|154496723|ref|ZP_02035419.1| hypothetical protein BACCAP_01015 [Bacteroides capillosus ATCC
           29799]
 gi|150273975|gb|EDN01075.1| hypothetical protein BACCAP_01015 [Bacteroides capillosus ATCC
           29799]
          Length = 374

 Score = 39.1 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           E V +G   LD +L  GG   G  V +      GK+TLAL         G    +   E
Sbjct: 51  ERVPTGFPTLDRSLN-GGLFNGLFV-LGAVPGLGKSTLALQIAYNLSGRGYPVLYFALE 107


>gi|212224891|ref|YP_002308127.1| hypothetical protein TON_1740 [Thermococcus onnurineus NA1]
 gi|212009848|gb|ACJ17230.1| Hypothetical ATPase [Thermococcus onnurineus NA1]
          Length = 248

 Score = 39.1 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 3/83 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  V +G  G+D  L  GG P   +V + G   +GK+  +   +    + G    +V  E
Sbjct: 2   IRRVKTGIPGMDEVL-HGGIPGRNVVLLSGGPGTGKSIFSQQFLWNGLQNGEPGIYVALE 60

Query: 105 --HALDSIYARKLGVDLKNLLIS 125
                      + G D++     
Sbjct: 61  EHPIQVRQNMAQFGWDVRKYEEE 83


>gi|255326107|ref|ZP_05367194.1| DNA repair protein RadA [Rothia mucilaginosa ATCC 25296]
 gi|255296818|gb|EET76148.1| DNA repair protein RadA [Rothia mucilaginosa ATCC 25296]
          Length = 477

 Score = 39.1 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 49/142 (34%), Gaps = 17/142 (11%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           S+G+   D  LG GG   G ++ + G    GK+TL L   A   +     A       + 
Sbjct: 75  STGNPEFDRVLG-GGLVPGAVILMAGEPGVGKSTLLLDVAATFARGTAGSAGQQGVQNIA 133

Query: 109 SIYARKL---------------GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
               R +                  ++ +  +   T E  L      +      ++VIDS
Sbjct: 134 PQPPRPVLYITGEESAAQVKLRADRIRAIADTLYLTSETDLGTALAHIEQVNPSLLVIDS 193

Query: 154 VAALTPRAEIEGDMGESLPGMQ 175
           V  L   AE+EG  G      +
Sbjct: 194 VQTLAS-AEVEGSAGGVTQVRE 214


>gi|302879237|ref|YP_003847801.1| replicative DNA helicase [Gallionella capsiferriformans ES-2]
 gi|302582026|gb|ADL56037.1| replicative DNA helicase [Gallionella capsiferriformans ES-2]
          Length = 465

 Score = 39.1 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   LD     GG   G+++ +    S GKT +AL+ +      G + AF   E     
Sbjct: 187 TGVAELDAI--TGGLEPGQLIIVAARPSVGKTAIALNVVDSVVTQGKSVAFFSLEMTRRE 244

Query: 110 IYAR 113
           I  R
Sbjct: 245 IIQR 248


>gi|148360205|ref|YP_001251412.1| DNA integration/recombination/inversion protein [Legionella
           pneumophila str. Corby]
 gi|148281978|gb|ABQ56066.1| DNA integration/recombination/inversion protein [Legionella
           pneumophila str. Corby]
          Length = 550

 Score = 39.1 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 44/299 (14%), Positives = 96/299 (32%), Gaps = 40/299 (13%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + +G   LD  L   G+  G  + I G   + KT  A      + + G    F+  E 
Sbjct: 241 EYLRTGIKVLDRMLDNKGYQTGSQIIISGRSGTAKTLFAASFAQSAVRQGRKVLFISFEE 300

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
           +               +   +    +   +IT   +   +   + +     +    E+  
Sbjct: 301 S-----------PNDLIHHVKSINIDLMKDITKKKLHIDSRRSVEMGLEDHIISIIELT- 348

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT--TGGNAL 223
              E    +       +L  L +++   +  + FI+ M+     +F +      +    +
Sbjct: 349 --EEKQFDVLILDPISSLLDLGNTMEVKRLFIRFISHMKSINKTLFFTELIPDYSKELTI 406

Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283
              SS+     R+ ++++      N+         + +  +  EF +   +GI+     +
Sbjct: 407 LGLSSLTETWIRLSNVENNGEF--NRLIHIAKARGIKTSNQIKEFYVT-DKGINIEAPYL 463

Query: 284 DLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI---AENIESLLRQNAGLVA 339
                                ++  G + S   LRE  E+    E I+ L R+   L  
Sbjct: 464 ------------------GDNQMMFGSQKSAHILREKQELQQRKEEIKRLEREITNLTE 504


>gi|126540735|emb|CAM45953.1| RAD51 homolog (S. cerevisiae) [Mus musculus]
          Length = 178

 Score = 39.1 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
              I  +++GS  LD  L  GG   G I E++G   +GKT 
Sbjct: 139 RSEIIQITTGSKELDKLL-QGGIETGSITEMFGEFRTGKTQ 178


>gi|289178192|gb|ADC85438.1| RadA [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 508

 Score = 39.1 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 1/90 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + +  + +G    D  LG GG   G +V I G    GK+TL L T     K+        
Sbjct: 93  DTVNRLPTGFGEFDRVLG-GGIVPGSVVLIAGEPGIGKSTLLLETAGNIAKSVAAAHSRT 151

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
            + +    +    G     L IS  ++  Q
Sbjct: 152 PDGSDSEPHDAHAGTHDSVLYISGEESQAQ 181


>gi|183601979|ref|ZP_02963348.1| DNA repair protein RadA [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219682891|ref|YP_002469274.1| DNA repair protein RadA [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241190468|ref|YP_002967862.1| DNA repair protein RadA [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241195874|ref|YP_002969429.1| DNA repair protein RadA [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|183218864|gb|EDT89506.1| DNA repair protein RadA [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219620541|gb|ACL28698.1| DNA repair protein RadA [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240248860|gb|ACS45800.1| DNA repair protein RadA [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250428|gb|ACS47367.1| DNA repair protein RadA [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|295793455|gb|ADG32990.1| DNA repair protein RadA [Bifidobacterium animalis subsp. lactis V9]
          Length = 491

 Score = 39.1 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 1/90 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + +  + +G    D  LG GG   G +V I G    GK+TL L T     K+        
Sbjct: 76  DTVNRLPTGFGEFDRVLG-GGIVPGSVVLIAGEPGIGKSTLLLETAGNIAKSVAAAHSRT 134

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQ 132
            + +    +    G     L IS  ++  Q
Sbjct: 135 PDGSDSEPHDAHAGTHDSVLYISGEESQAQ 164


>gi|11141547|gb|AAG31993.1|AF277236_1 disrupted meiotic cDNA 1 protein [Eremopyrum distans]
          Length = 138

 Score = 39.1 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 49/150 (32%), Gaps = 18/150 (12%)

Query: 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176
            N++ ++  T E    +       +      ++++DSV AL          G      + 
Sbjct: 1   DNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR----VDFSGRGELAERQ 56

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIR 234
           + ++Q L             +   NQ+    G       P+   GG+ L   +++RL +R
Sbjct: 57  QKLAQMLSXXXXIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLR 116

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
           +           G Q   K+         +
Sbjct: 117 KGK---------GEQRVCKIFDAPNLPEGE 137


>gi|70606944|ref|YP_255814.1| flagellar accessory protein FlaH [Sulfolobus acidocaldarius DSM
           639]
 gi|68567592|gb|AAY80521.1| flagella-related protein H [Sulfolobus acidocaldarius DSM 639]
          Length = 228

 Score = 39.1 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 47/129 (36%), Gaps = 19/129 (14%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           ++S+G+  LD  L  GG P    + I G   +GK+ L+   +     +      +  E  
Sbjct: 2   IISTGNDDLDRRL--GGIPYPASIMIEGDHGTGKSVLSAQFVLGFLLSDKKGYVITTEQT 59

Query: 107 LDSIYARKLGVDLKNLLIS-----------------QPDTGEQALEITDMLVRSGAVDII 149
                 +   + +  +                         E+ L++    +RS  +D I
Sbjct: 60  TKDYLIKMKEIKIDLIPYFIRGKLRIAPLNTKKFNWNSSLAEKILDVIVNFIRSKNIDFI 119

Query: 150 VIDSVAALT 158
           VIDS++ L 
Sbjct: 120 VIDSLSILA 128


>gi|160899544|ref|YP_001565126.1| DnaB domain-containing protein [Delftia acidovorans SPH-1]
 gi|160365128|gb|ABX36741.1| DnaB domain protein helicase domain protein [Delftia acidovorans
           SPH-1]
          Length = 454

 Score = 38.7 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
             +++G  GLD  L  GG  +G ++ I      GKT LAL       +
Sbjct: 175 PAIATGIGGLDKLLN-GGMRRGEVMVIGARPKHGKTALALAMARNMAR 221


>gi|302669396|ref|YP_003829356.1| UmuC-like DNA repair protein [Butyrivibrio proteoclasticus B316]
 gi|302393869|gb|ADL32774.1| UmuC-like DNA repair protein [Butyrivibrio proteoclasticus B316]
          Length = 515

 Score = 38.7 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 10/52 (19%)

Query: 12  KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63
           K+KAL+ A  +IQ+ +GK AI++    G+ +E       G+ GLD A  IGG
Sbjct: 471 KAKALQKATMEIQKKFGKTAIVR----GTAYEE------GATGLDRAKQIGG 512


>gi|59800923|ref|YP_207635.1| putative replicative DNA helicase, putative phage associated
           protein [Neisseria gonorrhoeae FA 1090]
 gi|194098226|ref|YP_002001282.1| Putative replicative DNA helicase, putative phage associated
           protein [Neisseria gonorrhoeae NCCP11945]
 gi|240013807|ref|ZP_04720720.1| Putative replicative DNA helicase, putative phage associated
           protein [Neisseria gonorrhoeae DGI18]
 gi|240016247|ref|ZP_04722787.1| Putative replicative DNA helicase, putative phage associated
           protein [Neisseria gonorrhoeae FA6140]
 gi|240113255|ref|ZP_04727745.1| Putative replicative DNA helicase, putative phage associated
           protein [Neisseria gonorrhoeae MS11]
 gi|240115336|ref|ZP_04729398.1| Putative replicative DNA helicase, putative phage associated
           protein [Neisseria gonorrhoeae PID18]
 gi|240117638|ref|ZP_04731700.1| Putative replicative DNA helicase, putative phage associated
           protein [Neisseria gonorrhoeae PID1]
 gi|240120908|ref|ZP_04733870.1| Putative replicative DNA helicase, putative phage associated
           protein [Neisseria gonorrhoeae PID24-1]
 gi|240125438|ref|ZP_04738324.1| Putative replicative DNA helicase, putative phage associated
           protein [Neisseria gonorrhoeae SK-92-679]
 gi|254494049|ref|ZP_05107220.1| predicted protein [Neisseria gonorrhoeae 1291]
 gi|260440175|ref|ZP_05793991.1| Putative replicative DNA helicase, putative phage associated
           protein [Neisseria gonorrhoeae DGI2]
 gi|268599335|ref|ZP_06133502.1| DnaB helicase [Neisseria gonorrhoeae MS11]
 gi|268601020|ref|ZP_06135187.1| DnaB helicase [Neisseria gonorrhoeae PID18]
 gi|268603342|ref|ZP_06137509.1| DnaB helicase [Neisseria gonorrhoeae PID1]
 gi|268684034|ref|ZP_06150896.1| DnaB helicase [Neisseria gonorrhoeae SK-92-679]
 gi|291043466|ref|ZP_06569182.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|59717818|gb|AAW89223.1| putative replicative DNA helicase, putative phage associated
           protein [Neisseria gonorrhoeae FA 1090]
 gi|193933516|gb|ACF29340.1| Putative replicative DNA helicase, putative phage associated
           protein [Neisseria gonorrhoeae NCCP11945]
 gi|226513089|gb|EEH62434.1| predicted protein [Neisseria gonorrhoeae 1291]
 gi|268583466|gb|EEZ48142.1| DnaB helicase [Neisseria gonorrhoeae MS11]
 gi|268585151|gb|EEZ49827.1| DnaB helicase [Neisseria gonorrhoeae PID18]
 gi|268587473|gb|EEZ52149.1| DnaB helicase [Neisseria gonorrhoeae PID1]
 gi|268624318|gb|EEZ56718.1| DnaB helicase [Neisseria gonorrhoeae SK-92-679]
 gi|291011929|gb|EFE03918.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 453

 Score = 38.7 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 41/254 (16%), Positives = 88/254 (34%), Gaps = 28/254 (11%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEV-VSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           + A+ +  + +G+     +G      +G+   + +G + LD     GG P G ++ I   
Sbjct: 154 KDAVKRETKTFGQTVEDLIGGLDKRLDGVRFGLPTGLMKLDGM--TGGLPDGNLIVIAAR 211

Query: 76  ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK---------NLLISQ 126
            S GKT LA +    + K G    F   E +   +  R +  +           NL  S 
Sbjct: 212 PSMGKTVLAENIARFALKQGKAVHFQSYEMSAVELARRGMAAECNIPMQNLKTGNLTQSD 271

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM------- 179
                  +            D++ +D +  L    ++   + + L      +M       
Sbjct: 272 YANMPIYVSQAKEWKFDVNCDLLNVDELCFLAKEKKLTTGL-DLLVVDHLHIMPRAGRDE 330

Query: 180 -------SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232
                  S+ L+ L + ++    ++  +N+   K      +     G  A++  +++ + 
Sbjct: 331 VAELGNISRRLKNLAAELNIPVVLVAQLNRGNTKQADKRPNMADIRGSGAIEQDANIIIM 390

Query: 233 IRRVGSIKDKDSIT 246
             R  S  D +   
Sbjct: 391 PHR-ESYYDGNENP 403


>gi|323702175|ref|ZP_08113842.1| putative circadian clock protein, KaiC [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532862|gb|EGB22734.1| putative circadian clock protein, KaiC [Desulfotomaculum
           nigrificans DSM 574]
          Length = 467

 Score = 38.7 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 54/153 (35%), Gaps = 7/153 (4%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           G  GLD  L  GGF +G I  I G   +GKT LAL  +    +      F+  E  +  +
Sbjct: 242 GITGLDEMLN-GGFREGTITLISGGTGTGKTALALKFLLDGAEKCENGLFLSFEEPVSQL 300

Query: 111 YA--RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA-LTPRAEIEGDM 167
               R+LG +    L    D       I+ + +        ++D V++    R  I+   
Sbjct: 301 IDNARQLGWETDKYL---ADGRLDIKFISPIELDVDKHAFEILDMVSSKKIDRLVIDSIS 357

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFI 200
                    +     L  +   I R     +F 
Sbjct: 358 SFESSVSDIQKYKDYLWAIAQQIKRRHITAIFT 390


>gi|152982130|ref|YP_001353601.1| hypothetical protein mma_1911 [Janthinobacterium sp. Marseille]
 gi|151282207|gb|ABR90617.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 260

 Score = 38.7 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 1/104 (0%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVE-IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           V SG   LD  L  GG+P   ++E +      G+  L   T+A+  + G T   +   H 
Sbjct: 38  VPSGYQALDRELPKGGWPPSVLIELLMAQPGIGELRLLAPTLARLTQAGKTVILLAPPHI 97

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
             +     LG+ L  L++ + D     +   +  ++S     ++
Sbjct: 98  PYAAALSDLGIRLPQLILIEVDKAADRIWAIEQTLKSAGFGALL 141


>gi|317482178|ref|ZP_07941201.1| DNA repair protein RadA [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916412|gb|EFV37811.1| DNA repair protein RadA [Bifidobacterium sp. 12_1_47BFAA]
          Length = 512

 Score = 38.7 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           E +E + +G    D  LG GG   G +  I G    GK+TL L T     +
Sbjct: 78  ESVERLGTGFSEFDRVLG-GGVVPGSVTLIAGEPGIGKSTLLLQTAGNIAR 127


>gi|296454830|ref|YP_003661974.1| DNA repair protein RadA [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296184262|gb|ADH01144.1| DNA repair protein RadA [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 512

 Score = 38.7 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           E +E + +G    D  LG GG   G +  I G    GK+TL L T     +
Sbjct: 78  ESVERLGTGFSEFDRVLG-GGVVPGSVTLIAGEPGIGKSTLLLQTAGNIAR 127


>gi|189440609|ref|YP_001955690.1| DNA repair protein RadA [Bifidobacterium longum DJO10A]
 gi|189429044|gb|ACD99192.1| Putative ATP-dependent serine protease [Bifidobacterium longum
           DJO10A]
          Length = 512

 Score = 38.7 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           E +E + +G    D  LG GG   G +  I G    GK+TL L T     +
Sbjct: 78  ESVERLGTGFSEFDRVLG-GGVVPGSVTLIAGEPGIGKSTLLLQTAGNIAR 127


>gi|46190430|ref|ZP_00121515.2| COG1066: Predicted ATP-dependent serine protease [Bifidobacterium
          longum DJO10A]
          Length = 438

 Score = 38.7 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
          E +E + +G    D  LG GG   G +  I G    GK+TL L T     +
Sbjct: 4  ESVERLGTGFSEFDRVLG-GGVVPGSVTLIAGEPGIGKSTLLLQTAGNIAR 53


>gi|254361540|ref|ZP_04977678.1| replicative DNA helicase DnaB [Mannheimia haemolytica PHL213]
 gi|153093058|gb|EDN74074.1| replicative DNA helicase DnaB [Mannheimia haemolytica PHL213]
          Length = 453

 Score = 38.7 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 63/172 (36%), Gaps = 28/172 (16%)

Query: 16  LEAALSQIQRVYGKGAI----------------M--QLGSQGSIFEGIEVVSSGSLGLDI 57
           LE+ + +I++   + ++                M  ++       + +    +G  G+D 
Sbjct: 138 LESVIDEIEKQITEFSLSDNTKSAADLSDIFANMLSRMELSAKNGDPVTGTPTGIQGIDE 197

Query: 58  ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC------AFVDAEHALDSIY 111
           A   GG P G ++ I    S GKT  +      + +   +         + A+  L    
Sbjct: 198 A-TTGGQP-GDLIVIGARPSMGKTAFSQTIAYHTLEKFESAPVFYHSMEMPADQILQRFL 255

Query: 112 ARKLGVDLKNLLISQPDTGEQ--ALEITDMLVRSGAVDIIVIDSVAALTPRA 161
           A +  V L+N+  +     E+   L      +     + +VID   +LTP+ 
Sbjct: 256 AMRARVGLQNIRQADSLDDEEWSKLTSAMGYILEHWKNRLVIDDEGSLTPQK 307


>gi|151942065|gb|EDN60421.1| radiation sensitive protein [Saccharomyces cerevisiae YJM789]
          Length = 406

 Score = 38.7 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 41 IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
          I E  + +SSG  GLD  L + GF    I EI+GP   GKT   +  +  
Sbjct: 11 IVESPKPLSSGITGLDEILNL-GFQARSIYEIFGPPGIGKTNFGIQLVCN 59


>gi|313887943|ref|ZP_07821622.1| putative DNA repair protein RadA [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312846109|gb|EFR33491.1| putative DNA repair protein RadA [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 459

 Score = 38.7 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 2/113 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E V +     +  +G GG  +  +  +     SGK+TL +         G    +   E 
Sbjct: 67  ERVKTSIEEFNRVMG-GGIVRDSVSILTAKPGSGKSTLLMQVANDLANKGMRVLYASGEE 125

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
           +   I  R     L  L  +       +L      V      +I+IDS+   T
Sbjct: 126 SETQIKMRA-ERILDKLSENIWVYSVTSLNSVLDQVEKIDPQLIIIDSIQTFT 177


>gi|300115615|ref|YP_003762189.1| AAA ATPase [Nitrosococcus watsoni C-113]
 gi|299541557|gb|ADJ29868.1| AAA ATPase [Nitrosococcus watsonii C-113]
          Length = 309

 Score = 38.7 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 3/117 (2%)

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           + GP  SGKT  AL  IA+   +GG  A +D E     +Y+  +  D+ +L  S P T E
Sbjct: 17  LCGPSGSGKTYSAL-LIAKGLASGGKIALIDTERGSGELYSELVDYDVSSL--SPPFTPE 73

Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188
           + + +     + G   +I+     A   +  I     +     +      + R++T 
Sbjct: 74  RYIALVREAEQIGYKVLIIDSLSHAWIGQGGILDMHDKVTAASRTGNRFTSWREVTP 130


>gi|330447348|ref|ZP_08310997.1| DNA repair protein RadA [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491539|dbj|GAA05494.1| DNA repair protein RadA [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 464

 Score = 38.7 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 10/140 (7%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   LD  L  GG   G +  I G   +GKTTL L  +           +  AE +L  
Sbjct: 82  TGIGELDRVL-CGGLTTGSVNIISGDPGAGKTTL-LSDLVARMSQLMPSLYCTAEESLSQ 139

Query: 110 IYAR----KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
              R    KL  +  NL +    + E  +   ++      +   VIDS+ A++       
Sbjct: 140 FKNRVNRLKLNCNEDNLYLMAETSVEAIIAELEV----KQIKFAVIDSIQAVSTELANGS 195

Query: 166 DMGESLPGMQARLMSQALRK 185
               S     A+ ++Q  ++
Sbjct: 196 PGSPSQVKAAAQALTQYCKQ 215


>gi|261339184|ref|ZP_05967042.1| hypothetical protein ENTCAN_05410 [Enterobacter cancerogenus ATCC
           35316]
 gi|288319031|gb|EFC57969.1| general secretory pathway protein E [Enterobacter cancerogenus ATCC
           35316]
          Length = 492

 Score = 38.7 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            KA++  +S I   YG+  +M+L  + ++   I  +      L+   G+   P G I+ +
Sbjct: 189 RKAIDVRVSTIPSQYGERVVMRLLDKSNLKPDINKLGLIDEELEKLKGLIDRPHG-IILV 247

Query: 73  YGPESSGKTT 82
            GP  SGK+T
Sbjct: 248 TGPTGSGKST 257


>gi|260587024|ref|ZP_05852937.1| conserved hypothetical protein [Blautia hansenii DSM 20583]
 gi|260542514|gb|EEX23083.1| conserved hypothetical protein [Blautia hansenii DSM 20583]
          Length = 336

 Score = 38.7 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 95/270 (35%), Gaps = 34/270 (12%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA----------LDSIYAR 113
            P G++  I G    GKTT+ L  IA+  K     +      +          +      
Sbjct: 36  IPYGKVTIIQGDPGEGKTTVVLQIIAKLTKGEAILSETSEGKSEETGVEPINVIYQTAED 95

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM----GE 169
            LG  +K  L++      + L I D       VD  + +++     R  +   +    G 
Sbjct: 96  GLGDTIKPRLLAAGADCSRVLVIDDQDQPLTMVDARLEEAIIQTKARLVVLDPIQSFLGA 155

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
            +   +A  +   +++++    + +C ++ I  M               G  ++ F ++ 
Sbjct: 156 GVDMHRANEIRPLMKRISVLAEKYQCAIILIGHMNKNSNGKSSYR----GLGSIDFQAAA 211

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289
           R  +  VG +KD+  I      +  VK+ +A     + F +   +G  + G+        
Sbjct: 212 RSVLI-VGRVKDEPEI----RVICHVKSSLAPEGDAIAFRLDKEKGFHWIGKYDISAEDL 266

Query: 290 SIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
                        G   GQ   ++K FL+E
Sbjct: 267 -----------LSGDGRGQKIRSAKEFLKE 285


>gi|256073461|ref|XP_002573049.1| hypothetical protein [Schistosoma mansoni]
 gi|238658219|emb|CAZ29281.1| expressed protein [Schistosoma mansoni]
          Length = 339

 Score = 38.7 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 1/78 (1%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
           G + S      ++S+G   LD  LG GG   G I+ I          L L+         
Sbjct: 3   GVKRSFKLSTFLISTGIPSLDELLG-GGVTSGSIILIEPDFHQTYAKLLLNLFVAEGILS 61

Query: 96  GTCAFVDAEHALDSIYAR 113
           G   F  A+   DS+ ++
Sbjct: 62  GHSIFYGAKETFDSLLSK 79


>gi|323338326|gb|EGA79555.1| Rad55p [Saccharomyces cerevisiae Vin13]
          Length = 406

 Score = 38.7 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 41 IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
          I E  + +SSG  GLD  L + GF    I EI+GP   GKT   +  +  
Sbjct: 11 IVESPKPLSSGITGLDEILNL-GFQARSIYEIFGPPGIGKTNFGIQLVCN 59


>gi|18873764|gb|AAL16356.1| KaiC [Nostoc linckia]
          Length = 209

 Score = 38.7 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 52/150 (34%), Gaps = 24/150 (16%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT----IAQSQK 93
           +  +  G+E + +   G D  +  GG P  R   I G   +GKT L+L      I    +
Sbjct: 11  KPPLIGGVEKIRTMIEGFDD-ISHGGLPISRTTLISGTSGTGKTLLSLQFLYNGITCFDE 69

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLIS------QPDTGEQALEI----------- 136
           +G    F ++   +    A   G +L  L+              +  +I           
Sbjct: 70  SGVFVTFEESPSDIIKN-AHIFGWNLPRLIEEGKLFILDASPDPEGQDIVGNFDLSALIE 128

Query: 137 -TDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
                +R      + IDS+ A+  + E  G
Sbjct: 129 RLQYAIRKYKAKRVSIDSITAVFQQYEAMG 158


>gi|325474765|gb|EGC77951.1| DNA repair protein RadA [Treponema denticola F0402]
          Length = 461

 Score = 38.7 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 63/187 (33%), Gaps = 19/187 (10%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEV-----VSSGSLGLDIALGIGGFPKGRIVEI 72
           AA   I   + K A           + IE      +S+G    D  LG G   +  I+ I
Sbjct: 47  AAERSIAEKFVKEA------HSVPLDAIEANDAVRLSTGIAEFDRVLGGGAVKRSAIL-I 99

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD---SIYARKLGVDLKNLLISQPDT 129
            G    GK+TL L   + S           +           A +L + LKN+ +     
Sbjct: 100 GGEPGIGKSTLLLQAASASSSGSVKKVLYVSGEESGGQIRSRADRLNLPLKNIELLCTC- 158

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
               LE  + ++       ++IDS+  +            +   + A  +   +++  S 
Sbjct: 159 ---RLEDVERVLNKVNPVFVIIDSIQTMYSADAGAVPGTINQLKLCAHELVSWVKERDSV 215

Query: 190 ISRSKCI 196
           +  +  +
Sbjct: 216 LFLTAHV 222


>gi|306815727|ref|ZP_07449876.1| replicative DNA helicase, putative [Escherichia coli NC101]
 gi|305851389|gb|EFM51844.1| replicative DNA helicase, putative [Escherichia coli NC101]
          Length = 455

 Score = 38.7 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 15/86 (17%)

Query: 3   YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
             +E      S AL+  L Q++ V G G             G+    +G   LD      
Sbjct: 151 TLRERTEASLSSALDTVLQQLESVLGSG-------------GVTGTPTGFDCLDEM--TC 195

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTI 88
           G   G +V +    S GKT+LAL   
Sbjct: 196 GLQPGDLVLLAARPSMGKTSLALSMC 221


>gi|291457242|ref|ZP_06596632.1| DNA repair protein RadA [Bifidobacterium breve DSM 20213]
 gi|291381077|gb|EFE88595.1| DNA repair protein RadA [Bifidobacterium breve DSM 20213]
          Length = 439

 Score = 38.7 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
          E +E + +G    D  LG GG   G +  I G    GK+TL L T     + 
Sbjct: 18 ETVERLGTGFSEFDRVLG-GGVVPGSVTLIAGEPGIGKSTLLLQTAGNIARA 68


>gi|296103141|ref|YP_003613287.1| general secretion pathway protein E [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295057600|gb|ADF62338.1| general secretion pathway protein E [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 492

 Score = 38.7 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            KA++  +S I   YG+  +M+L  + ++   I  +      L+   G+   P G I+ +
Sbjct: 189 RKAIDVRVSTIPSQYGERVVMRLLDKSNLKPDINKLGLIDEELEKLKGLINRPHG-IILV 247

Query: 73  YGPESSGKTT 82
            GP  SGK+T
Sbjct: 248 TGPTGSGKST 257


>gi|254781149|ref|YP_003065562.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040826|gb|ACT57622.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 266

 Score = 38.7 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 45/158 (28%), Gaps = 2/158 (1%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M+   Q         +  G   +D  +  GG     ++ I    S GKTT AL T     
Sbjct: 110 MKSAEQQKKEGENPDIKWGLQSVDHLM--GGVQLRELILIGARPSMGKTTFALSTALHMA 167

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
            +G   AF   E   + + AR L   L       P       EI     R        + 
Sbjct: 168 MSGHGVAFFSLEMDREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQ 227

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190
               +       G M         R     + +L   +
Sbjct: 228 DFPLIIDDRPSPGIMEFVHVANGLRNKHTKMVQLYRLL 265


>gi|210612358|ref|ZP_03289283.1| hypothetical protein CLONEX_01484 [Clostridium nexile DSM 1787]
 gi|210151618|gb|EEA82625.1| hypothetical protein CLONEX_01484 [Clostridium nexile DSM 1787]
          Length = 635

 Score = 38.7 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 86/240 (35%), Gaps = 17/240 (7%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG---TCAFVDAEHALDSIYARKLGVDLK 120
            P G++  I G    GKT LA+  IA     G        ++  + L       +   +K
Sbjct: 336 IPFGKVTLIQGNPGKGKTWLAM-AIAAYCTNGKELPNALPIEPFNVLYQTAEDGIADTIK 394

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM----GESLPGMQA 176
             L        +   I +   +    D  +  ++     R  I   +    G ++   +A
Sbjct: 395 PRLAKCGADMTRVRFINEDEKQLSMTDDRIEKAIRQNNVRLMIMDPIQAYLGANVDMNRA 454

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
             +    R L++   R+ C +V I    +       S   + G   +       L + +V
Sbjct: 455 NEIRPLFRHLSTIAERTGCAIVLI--GHLNKSSGSQSDYRSLGSIDIAAAVRSILFVEKV 512

Query: 237 GSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
              K++D        V   K+ +A     V F +   EG+ + GE  D+ ++  ++ K+G
Sbjct: 513 EKEKEQDIRV-----VYQQKDSLAKKENPVAFSLE-EEGLKWLGE-YDISIEDLLMGKAG 565


>gi|71028890|ref|XP_764088.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68351042|gb|EAN31805.1| hypothetical protein, conserved [Theileria parva]
          Length = 286

 Score = 38.7 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
          G   +D AL  GG   G++ EIYGP  SGKT  AL   ++
Sbjct: 31 GVKEIDQALN-GGLLLGKVCEIYGPSGSGKTQFALSLTSE 69


>gi|313126769|ref|YP_004037039.1| reca-superfamily ATPase possibly involved in signal transduction
           [Halogeometricum borinquense DSM 11551]
 gi|312293134|gb|ADQ67594.1| RecA-superfamily ATPase possibly involved in signal transduction
           [Halogeometricum borinquense DSM 11551]
          Length = 248

 Score = 38.7 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 61/213 (28%), Gaps = 20/213 (9%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---GGTCAFVD 102
           E V +G  GLD  L  GG  K   V I G   +GK+ L L  +         GG     +
Sbjct: 3   EFVKTGVEGLDSILN-GGIVKNAAVLISGNPGTGKSILGLQYLYNGVDKYDEGGIYLTFE 61

Query: 103 AEHALDSIYARKLGVD-LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
                    A  +G D     +            +      S  +D I+ D       R 
Sbjct: 62  EAEDDIQEAAESIGFDRWSEYVEEGKIKVYDKRTLLRDGDFSSTLDRILGDLQDTSYDRL 121

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE------ 215
            ++      L     +   Q L K    +  S    +   +            E      
Sbjct: 122 VLDSLTMFQLFFEDEKEQRQYLLKFIDILKDSDLTSLLTTEQSAIFPETEIGLENFLTDG 181

Query: 216 ------TTTGGNALKFYSSVRLDIRRVGSIKDK 242
                 +  G  + ++   V +   R  SIK+ 
Sbjct: 182 NIYLIQSPAGATSNRY---VWVAKMRKQSIKNS 211


>gi|254166923|ref|ZP_04873777.1| hypothetical protein ABOONEI_2015 [Aciduliprofundum boonei T469]
 gi|254167276|ref|ZP_04874128.1| hypothetical protein ABOONEI_2089 [Aciduliprofundum boonei T469]
 gi|289596391|ref|YP_003483087.1| RecA-superfamily ATPase implicated in signal transduction-like
           protein [Aciduliprofundum boonei T469]
 gi|197623539|gb|EDY36102.1| hypothetical protein ABOONEI_2089 [Aciduliprofundum boonei T469]
 gi|197624533|gb|EDY37094.1| hypothetical protein ABOONEI_2015 [Aciduliprofundum boonei T469]
 gi|289534178|gb|ADD08525.1| RecA-superfamily ATPase implicated in signal transduction-like
           protein [Aciduliprofundum boonei T469]
          Length = 246

 Score = 38.7 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 2/118 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E  + G   L+ AL + G PKG  + +YG   SG    A    A          F   E 
Sbjct: 5   ETTTLGIETLNKAL-MNGIPKGYTILLYGSPGSGTELFAKQFAAAGVGKENVIYFTTIER 63

Query: 106 ALDSI-YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
             D I   R  G D    +++      Q +   ++++     + I I+ +     + E
Sbjct: 64  DEDIIATMRDFGWDTNIKIVNIGVEYYQKVLEKELIISRYREEGIPINELFQPARKKE 121


>gi|307352383|ref|YP_003893434.1| HTR-like protein [Methanoplanus petrolearius DSM 11571]
 gi|307155616|gb|ADN34996.1| HTR-like protein [Methanoplanus petrolearius DSM 11571]
          Length = 276

 Score = 38.7 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 52/166 (31%), Gaps = 12/166 (7%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD--- 102
           E + +G   LD  L  GG P G +V + G + +G       ++    K        D   
Sbjct: 7   ERMPTGISSLDPVL-DGGVPPGSVVLLIGEQGAGNREFVQSSMIYLSKMKAAGQNGDNRI 65

Query: 103 -AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR------SGAVDIIVIDSVA 155
             E  +   + R     +  + IS        +E     +         +V      S  
Sbjct: 66  LPEQMVYVSFTRLTSSIIDEIKISYKKDLVAGIEENISFIDLSNFYFEKSVVPRGWYSHT 125

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201
           +L    E +G + +SL       + +   K    I     +   IN
Sbjct: 126 SLLTEKE-KGKVSDSLVAELTNSLRKIKNKSLIIIDSLTDLNTTIN 170


>gi|255321531|ref|ZP_05362689.1| replicative DNA helicase [Campylobacter showae RM3277]
 gi|255301387|gb|EET80646.1| replicative DNA helicase [Campylobacter showae RM3277]
          Length = 469

 Score = 38.7 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 16/156 (10%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           +D +    I D +  +   ++ +++        +L       + I  + +G   L+    
Sbjct: 143 VDGQSAGAIKDAAVIIADVIAHLEKQ-------KLLED----KDIVGIDTGFRQLNEM-- 189

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
             GF  G ++ I      GKTT+ L+ +      GG   F   E   + I  R L     
Sbjct: 190 TKGFKHGDLIIIAARPGMGKTTICLNLMNHVLMRGGGVVFFSLEMPAEQIMLRMLSAKTS 249

Query: 121 NL---LISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
                +++     E+   ++D         + V DS
Sbjct: 250 IPLQNIMTAKMDDEEWSRLSDACDDMANRKLFVYDS 285


>gi|221135079|ref|ZP_03561382.1| DNA repair protein RadA [Glaciecola sp. HTCC2999]
          Length = 460

 Score = 38.7 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 50/142 (35%), Gaps = 2/142 (1%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
             E   +    LD  L  GG   G +  I G   +GKTTL L  +           +  A
Sbjct: 72  ETEKSPTEIGELDRVLS-GGITIGSVNIISGDPGAGKTTL-LSDLVARMSMRMQALYCTA 129

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E +L     R   + L           E ++E     + +  +   VIDS+ A+   +  
Sbjct: 130 EESLSQFKNRVNRLKLTYNEDQLFLLSETSVEAIIEELDTHQIKFAVIDSIQAVVTDSAN 189

Query: 164 EGDMGESLPGMQARLMSQALRK 185
                 S     A+ ++Q  ++
Sbjct: 190 GSPGSPSQVKSAAQALTQYCKQ 211


>gi|331014832|gb|EGH94888.1| recombinase A [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 38

 Score = 38.7 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/38 (50%), Positives = 28/38 (73%)

Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           ++    +K+ D + G++TRVKVVKNK+A PF+Q EF I
Sbjct: 1   VKLGDRLKEGDEVVGSETRVKVVKNKVAPPFRQAEFQI 38


>gi|115631505|ref|XP_787572.2| PREDICTED: similar to Trad [Strongylocentrotus purpuratus]
 gi|115966392|ref|XP_001182043.1| PREDICTED: similar to Trad [Strongylocentrotus purpuratus]
          Length = 208

 Score = 38.7 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 2/78 (2%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGT 97
             +   +  +S+G   +D  L  GG     + EI G  + GKT   L   +     +   
Sbjct: 36  DEVISTVAYLSTGCDSIDKLL-DGGVYTSELTEIVGQAAVGKTQFCLTLASCVAVSSEQN 94

Query: 98  CAFVDAEHALDSIYARKL 115
             F+D      +     +
Sbjct: 95  VLFIDTNGGFHASRLHDI 112


>gi|71907454|ref|YP_285041.1| ABC transporter related [Dechloromonas aromatica RCB]
 gi|123760531|sp|Q47F10|PHNC_DECAR RecName: Full=Phosphonates import ATP-binding protein PhnC
 gi|71847075|gb|AAZ46571.1| ABC transporter related protein [Dechloromonas aromatica RCB]
          Length = 275

 Score = 38.7 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 41/125 (32%), Gaps = 3/125 (2%)

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL-DSIYARKLGVDLKNLL 123
            KG  + + GP  +GKT+L        + T G     D +         + L   +  + 
Sbjct: 27  EKGERIALIGPSGAGKTSLLSVLGTALEPTNGLAEVFDCDQNFWGPSAIKALRARIGTVH 86

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
            S P  G Q   +   ++           S+A+L    +I G          A  +    
Sbjct: 87  QSPPIPGRQ--RVVTAVLAGKLGQWPAWKSLASLVYPLDIPGARAALERVDLADKLFARC 144

Query: 184 RKLTS 188
            +L+ 
Sbjct: 145 DELSG 149


>gi|329901255|ref|ZP_08272780.1| RecA/RadA recombinase [Oxalobacteraceae bacterium IMCC9480]
 gi|327549187|gb|EGF33779.1| RecA/RadA recombinase [Oxalobacteraceae bacterium IMCC9480]
          Length = 265

 Score = 38.7 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE-IYGPESSGKTTLALHTIAQSQ 92
           Q+GSQ ++        SG   LD  L  GG+P   ++E +      G+  L    IA   
Sbjct: 30  QMGSQRAV-----TTPSGFSALDRELPNGGWPASVLIELLLAQPGIGELRLLAPLIASLT 84

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +   T   +   H   +    +LG+DL ++L+ + +     +   +  ++S +   ++
Sbjct: 85  QAKKTVILMAPPHIPFAAALAELGIDLTHILLVEAEKPADRIWAIEQALKSASFGALL 142


>gi|167463685|ref|ZP_02328774.1| hypothetical protein Plarl_14209 [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322384410|ref|ZP_08058096.1| hypothetical protein PL1_0942 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150768|gb|EFX44228.1| hypothetical protein PL1_0942 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 458

 Score = 38.7 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 85/250 (34%), Gaps = 12/250 (4%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +    LD    IGGF  G I  I      GKT L +  + +  + G +      E     
Sbjct: 172 TPFEALDRE--IGGFYSGDIYGIMAESGRGKTYLLIAIVDKLLRQGASVLVKSYEVKEYV 229

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
             AR + V      + + +  +  L I +  + SG ++  V ++   +  +         
Sbjct: 230 WLARLISVATAVDGLFKDEETQTPLGIPNKAILSGKLEDFVRENFEDVVSKLADYYPGKL 289

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
              G     +++ L  L   +  +K  +V ++       V   +   T GG       + 
Sbjct: 290 YFQGKGGSELTRTLDDLERELQTTKVDVVILDPFYGLSDVYGRNANKTAGG-------AA 342

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG-VK 288
                R   I  ++ + G  +    V+ K     +Q E      + +     L+D+  V 
Sbjct: 343 EYAASRFERIVGENDVVGFYSIQVTVEKKRLDEEEQRELKTPKRDQVKTTKRLLDIATVL 402

Query: 289 ASI--VDKSG 296
                ++K G
Sbjct: 403 LGFDSIEKEG 412


>gi|320333455|ref|YP_004170166.1| DnaB domain-containing protein helicase domain-containing protein
           [Deinococcus maricopensis DSM 21211]
 gi|319754744|gb|ADV66501.1| DnaB domain protein helicase domain protein [Deinococcus
           maricopensis DSM 21211]
          Length = 511

 Score = 38.7 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL----ALHTIAQSQK 93
           + ++S+G   LD  LG GGF  G  V +    + GK+      ALH +   Q+
Sbjct: 183 VPMISTGFKELDFRLG-GGFEAGSFVILGMKTNVGKSKFAVSVALHHVRMMQR 234


>gi|300311394|ref|YP_003775486.1| replicative DNA helicase [Herbaspirillum seropedicae SmR1]
 gi|300074179|gb|ADJ63578.1| replicative DNA helicase protein [Herbaspirillum seropedicae SmR1]
          Length = 478

 Score = 38.7 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 67/235 (28%), Gaps = 41/235 (17%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
                  I  V +G + LD      G   G ++ + G  S GKT  +++         G 
Sbjct: 200 NRDSSSDITGVPTGFMDLDKM--TSGLQPGDLIIVAGRPSMGKTAFSINIGEHVAIESGL 257

Query: 98  -CAFVDAEHALDSIYARKLGV--DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
             A    E     +  R LG    L    +      ++        ++        ID  
Sbjct: 258 PVAVFSMEMGGAQLAMRMLGSVGRLDQHRLRTGRLLDEDWPRLTHAIQKMNDAQFYIDET 317

Query: 155 AALTPRA-----------------------EIEGDMGESLPGMQARLMSQALRKLTSSIS 191
            AL+P                         ++    G S    +A  +S+  R L     
Sbjct: 318 PALSPIELRARSRRLARQCGKLGLIIIDYLQLMSGNGGSSSENRASEISEISRSLKGLAK 377

Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
              C ++ ++Q+   +          +             D+R  G+I+    + 
Sbjct: 378 ELNCPVIALSQLNRSLEQRPNKRPVMS-------------DLRESGAIEQDADVI 419


>gi|187478519|ref|YP_786543.1| hypothetical protein BAV2027 [Bordetella avium 197N]
 gi|115423105|emb|CAJ49636.1| conserved hypothetical protein [Bordetella avium 197N]
          Length = 233

 Score = 38.7 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 2/105 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVE-IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           VV +G   L   L  GG+P G + E +     +G+  L L T  + Q+     A V    
Sbjct: 24  VVPTGYADLSAQLPEGGWPVGSLTELLLPHPGNGELRL-LSTALRGQQDSRPVALVQPPF 82

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
                  R+  +  + LL   P      L  T+ +++  +   ++
Sbjct: 83  TPHIAAWRQWRIAPERLLWIAPAKLADTLWATEQVLKHASCTALL 127


>gi|170723116|ref|YP_001750804.1| DnaB domain-containing protein [Pseudomonas putida W619]
 gi|169761119|gb|ACA74435.1| DnaB domain protein helicase domain protein [Pseudomonas putida
           W619]
          Length = 460

 Score = 38.7 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           +S+G   LD  L   G   G ++ + G   SGKT L          + G    +
Sbjct: 177 LSTGIPDLDNIL--CGLRPGHMIVVAGLPGSGKTILGQQIAQHITVSLGHAGLM 228


>gi|15678620|ref|NP_275735.1| hypothetical protein MTH592 [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|2621671|gb|AAB85098.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 224

 Score = 38.7 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           S+G  GLD  LG      G ++ + GP   GKT LA     ++ +    C F+ AE+ 
Sbjct: 6   STGIAGLDAVLGKP--EPGYLMLLTGPPKVGKTVLATEFTYRALQRRNPCLFIAAEYG 61


>gi|254168886|ref|ZP_04875726.1| KaiA binding family [Aciduliprofundum boonei T469]
 gi|197622150|gb|EDY34725.1| KaiA binding family [Aciduliprofundum boonei T469]
          Length = 463

 Score = 38.7 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 56/153 (36%), Gaps = 6/153 (3%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + V  G  G++  LG      G +  + GP  +GKT +A + + ++ K G  C +V    
Sbjct: 228 QTVKFGIKGMEKILGN--IYTGDVTLLTGPPGTGKTLMAYYFLNEAAKKGEKCVYVSFAF 285

Query: 106 ALDSIYAR----KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
               +  R       +    ++   P   +    +   L        +V+D +  +    
Sbjct: 286 PEKDVLKRVKDLGFNLSTCKIIYQDPFNFDPYEFMWKTLKELNNAKRVVLDGINEVEMND 345

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EI     E L  ++ R +   +   T +I  S 
Sbjct: 346 EIRKVYHEFLKNLKERNILTLITYTTPTIISSY 378


>gi|111222282|ref|YP_713076.1| outer membrane lipoprotein ABC transporter ATP-binding protein
           [Frankia alni ACN14a]
 gi|111149814|emb|CAJ61508.1| putative transport protein of outer membrane lipoproteins (ABC
           superfamily, atp_bind) (partial match) [Frankia alni
           ACN14a]
          Length = 464

 Score = 38.7 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 13/126 (10%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA------EHALDSIYARKLGV 117
           FP+GR   I GP  SGK+TL          T G     D       +  L  +   ++G 
Sbjct: 41  FPRGRFTAIMGPSGSGKSTLMHCLAGLDTVTRGRVFIGDVDLSRLSDKELTRLRRDRIGF 100

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIV--IDSVAALTPR-----AEIEGDMGES 170
             +   +    T  + + +   +         +  +     L PR     +E+ G   + 
Sbjct: 101 IFQQFNLLPTLTAAENITLPLSIAGRSPDQAWMRTVVDAVGLAPRLGHRPSELSGGQQQR 160

Query: 171 LPGMQA 176
           +   +A
Sbjct: 161 VACARA 166


>gi|331086030|ref|ZP_08335113.1| hypothetical protein HMPREF0987_01416 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406953|gb|EGG86458.1| hypothetical protein HMPREF0987_01416 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 635

 Score = 38.7 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 86/240 (35%), Gaps = 17/240 (7%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG---TCAFVDAEHALDSIYARKLGVDLK 120
            P G++  I G    GKT LA+  IA     G        ++  + L       +   +K
Sbjct: 336 IPFGKVTLIQGNPGKGKTWLAM-AIAAYCTNGKELPNALPIEPFNVLYQTAEDGIADTIK 394

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM----GESLPGMQA 176
             L        +   I +   +    D  +  ++     R  I   +    G ++   +A
Sbjct: 395 PRLAKCGADMTRVRFINEDEKQLSMTDDRIEKAIRQNNVRLMIMDPIQAYLGANVDMNRA 454

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
             +    R L++   R+ C +V I    +       S   + G   +       L + +V
Sbjct: 455 NEIRPLFRHLSTIAERTGCAIVLI--GHLNKSSGSQSDYRSLGSIDIAAAVRSILFVEKV 512

Query: 237 GSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
              K++D        V   K+ +A     V F +   EG+ + GE  D+ ++  ++ K+G
Sbjct: 513 EKEKEQDIRV-----VYQQKDSLAKKENPVAFSLG-EEGLKWLGE-YDISIEDLLMGKAG 565


>gi|288947751|ref|YP_003445134.1| AAA ATPase [Allochromatium vinosum DSM 180]
 gi|288898267|gb|ADC64102.1| AAA ATPase [Allochromatium vinosum DSM 180]
          Length = 328

 Score = 38.7 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           + GP  SGKT  AL  IAQ    GG  A +D E     +YA     D+  L  + P T  
Sbjct: 16  LCGPSGSGKTYSAL-LIAQGLAPGGKIALIDTERGSGELYADLTAYDVAPL--NPPYTPT 72

Query: 132 QALEITDMLVRSGAVDIIVIDSVAA 156
           + +EI      S   D+++IDS++ 
Sbjct: 73  RYIEIIKA-AESAGYDVLIIDSLSH 96


>gi|254166663|ref|ZP_04873517.1| KaiA binding family [Aciduliprofundum boonei T469]
 gi|289596143|ref|YP_003482839.1| Non-specific serine/threonine protein kinase [Aciduliprofundum
           boonei T469]
 gi|197624273|gb|EDY36834.1| KaiA binding family [Aciduliprofundum boonei T469]
 gi|289533930|gb|ADD08277.1| Non-specific serine/threonine protein kinase [Aciduliprofundum
           boonei T469]
          Length = 463

 Score = 38.7 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 56/153 (36%), Gaps = 6/153 (3%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + V  G  G++  LG      G +  + GP  +GKT +A + + ++ K G  C +V    
Sbjct: 228 QTVKFGIKGMEKILGN--IYTGDVTLLTGPPGTGKTLMAYYFLNEAAKKGEKCVYVSFAF 285

Query: 106 ALDSIYAR----KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
               +  R       +    ++   P   +    +   L        +V+D +  +    
Sbjct: 286 PEKDVLKRVKDLGFNLSTCKIIYQDPFNFDPYEFMWKALKELNNAKRVVLDGINEVEMND 345

Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194
           EI     E L  ++ R +   +   T +I  S 
Sbjct: 346 EIRKVYHEFLKNLKERNILTLITYTTPTIISSY 378


>gi|168985297|emb|CAQ09799.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
           recombination (yeast) [Homo sapiens]
          Length = 139

 Score = 38.7 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
           +++GS   D  LG GG     I E +G   +GKT L+ 
Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSH 137


>gi|159489102|ref|XP_001702536.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158280558|gb|EDP06315.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 347

 Score = 38.7 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 32 IMQLGSQGSIFEGIEVV-SSGSLGLDIALGIGGFPKGRIVEIYGPE 76
          + +L    +  +      S+GS  LD+ L  GG+P G IVE+ GPE
Sbjct: 31 VARLSVDSATPQSAPARRSTGSRALDV-LTRGGYPAGVIVELTGPE 75


>gi|212712863|ref|ZP_03320991.1| hypothetical protein PROVALCAL_03960 [Providencia alcalifaciens DSM
           30120]
 gi|212684555|gb|EEB44083.1| hypothetical protein PROVALCAL_03960 [Providencia alcalifaciens DSM
           30120]
          Length = 456

 Score = 38.7 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 61/207 (29%), Gaps = 25/207 (12%)

Query: 37  SQGSIFEGIE-VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
            + ++ E I  ++ +G   LD    IGGF    +V I G    GKT LAL  I    + G
Sbjct: 163 ERRNLGEDISGMIKTGIEALDDK--IGGFNPTDLVFIGGRPGMGKTELALTMIEGMTRDG 220

Query: 96  GTCAFVDAEHALDSIYARKL-----------------GVDLKNLLISQPDTGEQALEITD 138
           G       E A   I  R +                   D   L        ++ + I D
Sbjct: 221 GGALLFSMEMANQQIAERMIAGSSQLPVSTLRKGQLHDEDWARLSSGLAHLMDRDIHIID 280

Query: 139 MLVRSGAVDIIVIDSVAALTPR-----AEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
               +      + ++     P       +  G + +         ++     L     R 
Sbjct: 281 ASNLTVEQICAISENHKRQYPNLKGIFVDYLGLIKKPKAERNDLAIAAISAALKGLAKRL 340

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGG 220
               + ++Q+   +     +       
Sbjct: 341 HTPTIALSQLSRDVDKRPLNQRRPVAA 367


>gi|167465251|ref|ZP_02330340.1| hypothetical protein Plarl_22283 [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 458

 Score = 38.7 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 84/250 (33%), Gaps = 12/250 (4%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +    LD    IGGF  G I  I      GKT L +  + +  + G +      E     
Sbjct: 172 TPFEALDRE--IGGFYSGDIYGIMAESGRGKTYLLIAIVDRLLRQGASVLVKSYEVKEYV 229

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
             AR + V      + + +  +  L I +  + SG ++  V ++   +  +         
Sbjct: 230 WLARLISVATAVDGLFKDEETQTPLGIPNKAILSGKLEDFVRENFEDVVSKLADYYPGKL 289

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229
              G     +++ L  +   +  +K   V I+       V   +   T+GG       + 
Sbjct: 290 YFQGKGGSELTRTLVDIERELQTTKVDAVIIDPFYGLSDVYGRNANKTSGG-------AA 342

Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG-VK 288
                R   I  ++ + G  +    V+ K      + E      + +     L+D+  V 
Sbjct: 343 EYAATRFEQIVGENDVVGFYSVQATVEEKKQDDEDRRELKTPKRKQVKTTTRLLDIATVL 402

Query: 289 ASI--VDKSG 296
                ++K G
Sbjct: 403 LGFDSIEKEG 412


>gi|21227191|ref|NP_633113.1| putative DNA integration/recombination/invertion protein
           [Methanosarcina mazei Go1]
 gi|20905530|gb|AAM30785.1| putative DNA integration/recombination/invertion protein
           [Methanosarcina mazei Go1]
          Length = 101

 Score = 38.7 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           + ++   +G  GLD  +  GG P+GR   +YG   SGK  +A+  + +  +  G     
Sbjct: 12  KSLKKTPTGISGLDD-ITYGGLPEGRTTLVYGSAGSGKILMAMEFLVKGAENYGEPGVF 69


>gi|238061425|ref|ZP_04606134.1| DNA repair protein radA [Micromonospora sp. ATCC 39149]
 gi|237883236|gb|EEP72064.1| DNA repair protein radA [Micromonospora sp. ATCC 39149]
          Length = 480

 Score = 38.7 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQKTGGTCAFVDAEHAL 107
            +G   LD  LG GG   G +V + G    GK+TL L    Q +   G     V  E ++
Sbjct: 89  PTGVSELDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLDVAQQWAATAGSPSLVVSGEESV 147

Query: 108 DSIYARKLGVD 118
             +  R   ++
Sbjct: 148 SQVRLRAERMN 158


>gi|154502511|ref|ZP_02039571.1| hypothetical protein RUMGNA_00324 [Ruminococcus gnavus ATCC 29149]
 gi|153796907|gb|EDN79327.1| hypothetical protein RUMGNA_00324 [Ruminococcus gnavus ATCC 29149]
          Length = 592

 Score = 38.7 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 86/240 (35%), Gaps = 17/240 (7%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG---TCAFVDAEHALDSIYARKLGVDLK 120
            P G++  I G    GKT LA+  IA     G        ++  + L       +   +K
Sbjct: 293 IPFGKVTLIQGNPGKGKTWLAM-AIAAYCTNGKELPNALPIEPFNVLYQTAEDGIADTIK 351

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM----GESLPGMQA 176
             L        +   I +   +    D  +  ++     R  I   +    G ++   +A
Sbjct: 352 PRLAKCGADMTRVRFINEDEKQLSMTDDRIEKAIRQNNVRLMIMDPIQAYLGANVDMNRA 411

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
             +    R L++   R+ C +V I    +       S   + G   +       L + +V
Sbjct: 412 NEIRPLFRHLSTIAERTGCAIVLI--GHLNKSSGSQSDYRSLGSIDIAAAVRSILFVEKV 469

Query: 237 GSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
              K++D        V   K+ +A     V F +   EG+ + GE  D+ ++  ++ K+G
Sbjct: 470 EKEKEQDVRV-----VYQQKDSLAKKENPVAFSLG-EEGLKWLGE-YDISIEDLLMGKAG 522


>gi|241663864|ref|YP_002982224.1| replicative DNA helicase [Ralstonia pickettii 12D]
 gi|240865891|gb|ACS63552.1| replicative DNA helicase [Ralstonia pickettii 12D]
          Length = 455

 Score = 38.7 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 5/124 (4%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           Q      ++ + +G   LD  LG GG   G ++ + G  + GKT   L+ I  +     +
Sbjct: 171 QEEAEGKVKAIPTGFQDLDAKLG-GGMRGGELLIVAGRPAMGKTAFVLN-ICNNVARDYS 228

Query: 98  CAFVDAEHALDSIYARKLGV--DLKNLLISQPDTGEQALEITDMLVRSGAVDI-IVIDSV 154
              +  E     ++ R + +   +    +  P+              +   D+ + +D  
Sbjct: 229 ALVLSMEMPKAQLHQRNIAMLGRVPLRRLRLPEQMTNEDWNALTAATAKISDMNLYLDDQ 288

Query: 155 AALT 158
            ALT
Sbjct: 289 PALT 292


>gi|15320651|ref|NP_203495.1| hypothetical protein Mx8p81 [Myxococcus phage Mx8]
 gi|15281761|gb|AAK94416.1|AF396866_81 p81 [Myxococcus phage Mx8]
          Length = 340

 Score = 38.7 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 72  IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131
           + GP  SGKT  AL         GG  A  D E    S YA +   D +++    P    
Sbjct: 14  LIGPSGSGKTFSALRIARGLVGPGGRIAVADTERGSASKYADRFDFDAQDMEQFGPRDFI 73

Query: 132 QALEITDMLVRSGAVDIIVIDSVAA 156
           + ++  +        D +++DS++ 
Sbjct: 74  RVIQEAE----REGYDALILDSLSH 94


>gi|290559314|gb|EFD92649.1| conserved hypothetical protein [Candidatus Parvarchaeum acidophilus
           ARMAN-5]
          Length = 231

 Score = 38.7 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 6/118 (5%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E + SG  G D A+  GGF K  +V IYG   +GK+      + +  K      ++  E
Sbjct: 2   VEKIKSGINGFD-AIVNGGFVKNSLVTIYGSPGAGKSIFCTEFLREGLKNNEKVFYISME 60

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
             +D            +   ++      +  +   +      + + ID    L  R E
Sbjct: 61  QDID-----SFLEQCDSFGFNEFRNNLNSNFVFLKMNGHDFKNFLSIDLPKILETRKE 113


>gi|319941484|ref|ZP_08015812.1| replicative DNA helicase [Sutterella wadsworthensis 3_1_45B]
 gi|319805104|gb|EFW01934.1| replicative DNA helicase [Sutterella wadsworthensis 3_1_45B]
          Length = 465

 Score = 38.7 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 57/167 (34%), Gaps = 16/167 (9%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
                  +  VSSG   LD      G  +G ++ I G  S GKT+ AL+           
Sbjct: 187 NTKSTSEVTGVSSGYPNLDHV--TAGLQRGDLIIIAGRPSMGKTSFALNIAENVG----- 239

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
              VD E  +           L   +IS          I    +R G +D    D+  A 
Sbjct: 240 ---VDQELPVAVFSMEMGADQLAQRMISSVG------RIDAQKLRKGQLDDEDWDNFTAA 290

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
             R E +    +  PG+    ++   R+L +       +++   Q+ 
Sbjct: 291 LHRLEEKPIYIDDTPGLTISELTSRTRRLVNQAGPLGLVVIDYIQLM 337


>gi|134094916|ref|YP_001099991.1| hypothetical protein HEAR1709 [Herminiimonas arsenicoxydans]
 gi|133738819|emb|CAL61866.1| conserved hypothetical protein; putative nucleoside triphosphate
           hydrolase domain [Herminiimonas arsenicoxydans]
          Length = 259

 Score = 38.3 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 43/106 (40%), Gaps = 1/106 (0%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVE-IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           + +SSG   LD  L  GG+P   + E +      G+  L   T+    +TG T   +   
Sbjct: 35  KAISSGYRELDQQLPHGGWPPSVLTELLLTNPGVGELRLLASTLTHITQTGKTVVVLAPA 94

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           +   +      G+D+  + + + D     +   +  ++S +   ++
Sbjct: 95  YLAVATSLAACGIDMSKVTLIEADKPADKIWAVEQALKSASFGALL 140


>gi|332178290|gb|AEE13979.1| DNA repair protein RadA [Thermodesulfobium narugense DSM 14796]
          Length = 456

 Score = 38.3 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 9/143 (6%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           GG  KG +  + G    GK+TLAL    Q         ++ +E +   + +R   + L  
Sbjct: 80  GGVVKGSVTLLSGEPGIGKSTLALQMADQIASKYQDVLYISSEESASQVASRAKRLKLNE 139

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
             I      +  L      +++    +I+IDS+  L        D  +S        + Q
Sbjct: 140 KKIKIISCSD--LNKILKTLKNHNFSMIIIDSIQMLY-------DSEDSSTIGSLSQIKQ 190

Query: 182 ALRKLTSSISRSKCILVFINQMR 204
              K+      S    + I  + 
Sbjct: 191 CASKINLFSKESNIPFLLIGHIT 213


>gi|307185210|gb|EFN71339.1| Elongator complex protein 4 [Camponotus floridanus]
          Length = 370

 Score = 38.3 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 5/121 (4%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL---HTIAQSQ 92
           G++ SI     ++S+G L LD  +G GG P G I+ I   +       AL          
Sbjct: 20  GTKPSIRNAQLLISTGILSLDDIIG-GGLPIGSILLIEEDKYGLYAKTALKYFMAEGVVT 78

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
                 A  D + +L       +  D   L     +  ++ ++I         +D   + 
Sbjct: 79  SQPILVASQDVQPSLFVSELPAVINDPD-LYTKTVNNVDEQMKIAWRYQNMKVIDSSPMA 137

Query: 153 S 153
           S
Sbjct: 138 S 138


>gi|327401868|ref|YP_004342707.1| hypothetical protein Arcve_1999 [Archaeoglobus veneficus SNP6]
 gi|327317376|gb|AEA47992.1| hypothetical protein Arcve_1999 [Archaeoglobus veneficus SNP6]
          Length = 230

 Score = 38.3 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 4/101 (3%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV---DAEHA 106
           +G L LD  L  GGFP+G ++ I     +G   L+ H   +  K+G    +V   D    
Sbjct: 6   TGILSLDAQL-RGGFPEGSVILILEDPGAGGDVLSYHFAVEGAKSGDKVLYVSTDDPADY 64

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
           +        G  ++ + I    + +         +R    D
Sbjct: 65  IRESMRCLDGDTIEKIEILDFVSPKLQSATPRDFLRRMRYD 105


>gi|222480080|ref|YP_002566317.1| putative circadian clock protein, KaiC [Halorubrum lacusprofundi
           ATCC 49239]
 gi|222452982|gb|ACM57247.1| putative circadian clock protein, KaiC [Halorubrum lacusprofundi
           ATCC 49239]
          Length = 472

 Score = 38.3 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 15/135 (11%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96
                   IE    G  GLD  + +GG P+  ++ + G   +GKTT AL  + ++ ++  
Sbjct: 234 DPDEFESSIERTDIGIEGLDEMI-LGGVPRRSLLSVIGGAGTGKTTFALQFLNEALESDR 292

Query: 97  TCAFVDAEHALDSI----------YARKLGVDLKNLLISQPDTGEQALEITD----MLVR 142
              ++  E   +SI          +      D   ++   P     +L         L+ 
Sbjct: 293 KGVYITLEQTRESILSTAEEKGWSFREHAEADRLAVVAIDPIEMANSLASIRNDLTRLIA 352

Query: 143 SGAVDIIVIDSVAAL 157
               D +V+DSV+ L
Sbjct: 353 EFDADRLVLDSVSLL 367


>gi|153808072|ref|ZP_01960740.1| hypothetical protein BACCAC_02358 [Bacteroides caccae ATCC 43185]
 gi|149128975|gb|EDM20191.1| hypothetical protein BACCAC_02358 [Bacteroides caccae ATCC 43185]
          Length = 460

 Score = 38.3 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 34/125 (27%), Gaps = 4/125 (3%)

Query: 36  GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
           G       G+  + +G   LD      G     ++ +      GKT +ALH    +   G
Sbjct: 175 GRIAKSTNGVTGIPTGLTDLDRM--TSGLQNSDLIVLAARPGVGKTGMALHLARNAAMAG 232

Query: 96  GTCAFVDAE--HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
              A    E      +        ++            Q L          A   I +D 
Sbjct: 233 YAVAVYSLEMQGERLADRWLTAASEISARRWRSGTVSTQELAEAHATAADLARLPIHVDD 292

Query: 154 VAALT 158
             ++ 
Sbjct: 293 STSVN 297


>gi|288931801|ref|YP_003435861.1| hypothetical protein Ferp_1435 [Ferroglobus placidus DSM 10642]
 gi|288894049|gb|ADC65586.1| conserved hypothetical protein [Ferroglobus placidus DSM 10642]
          Length = 229

 Score = 38.3 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 34/112 (30%), Gaps = 4/112 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E + +G   LD  LG GG P G +V I+    +          +       T       
Sbjct: 1   MERIPTGITILDKRLG-GGLPAGTMVCIFANPIAMPEVFLHQFASVYATFYFTTVR---P 56

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156
                     +G D+ ++            E    +V     D  + D V A
Sbjct: 57  AKYVRENIESMGFDVDHIEFIDVFEKYYLSETGAFVVEDMYRDRNIFDFVDA 108


>gi|213019861|ref|ZP_03335662.1| replicative DNA helicase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212994560|gb|EEB55207.1| replicative DNA helicase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 168

 Score = 38.3 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 7/129 (5%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + IE +++G   LD     GGF +G +  +    S GKT++ALH   ++ K        D
Sbjct: 35  DEIEGITTGIKELDTI--TGGFKEGELSVLAARTSIGKTSIALHMALEAAKL-----LND 87

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
            E+             +  ++  + +     +     +V        +         R  
Sbjct: 88  HEYVCFFSLEMSANQLINRIISIKVNETVNTIIKNKNIVSQKYDIKEIRGKDNPTHYRNR 147

Query: 163 IEGDMGESL 171
           +   + +  
Sbjct: 148 VITGVCDRQ 156


>gi|55378894|ref|YP_136744.1| circadian regulator [Haloarcula marismortui ATCC 43049]
 gi|55231619|gb|AAV47038.1| circadian regulator [Haloarcula marismortui ATCC 43049]
          Length = 241

 Score = 38.3 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 43/129 (33%), Gaps = 17/129 (13%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-GGTCAFVDA 103
           IE   +G  GLD  L  GG  K     + G   +GK+ L L  I    +       ++  
Sbjct: 2   IEQTKTGIEGLDDILN-GGIVKNSTTLVSGNPGAGKSILCLQYIYNGVEKYDEKGIYLSF 60

Query: 104 EHALDSIYARKLGVDLKNLLIS---------------QPDTGEQALEITDMLVRSGAVDI 148
           E     +      +   N                   + +    +L+I    +  G  D 
Sbjct: 61  EEDESDLREAAESLGFDNWQDHVDNGNIKVYDKQVLLRENDFTSSLDILLEELEDGDYDR 120

Query: 149 IVIDSVAAL 157
           +V+DS+A  
Sbjct: 121 LVLDSLAMF 129


>gi|312197575|ref|YP_004017636.1| ABC transporter [Frankia sp. EuI1c]
 gi|311228911|gb|ADP81766.1| ABC transporter related protein [Frankia sp. EuI1c]
          Length = 581

 Score = 38.3 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 44/126 (34%), Gaps = 13/126 (10%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA------EHALDSIYARKLGV 117
           FP+GR   I GP  SGK+TL          +GG     +       +  L  +   ++G 
Sbjct: 50  FPRGRFTAIMGPSGSGKSTLMHCLAGLDTISGGRVLIGEVDLSRLSDRQLTQLRRDRIGF 109

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVD--IIVIDSVAALTPR-----AEIEGDMGES 170
             +   +    T  + + +   +         + V+     L PR      E+ G   + 
Sbjct: 110 IFQQYNLLPTLTAAENITLPLDIAGRRPDKKWMKVVVDAVGLAPRLNHRPTELSGGQQQR 169

Query: 171 LPGMQA 176
           +   +A
Sbjct: 170 VACARA 175


>gi|302760367|ref|XP_002963606.1| hypothetical protein SELMODRAFT_80718 [Selaginella moellendorffii]
 gi|300168874|gb|EFJ35477.1| hypothetical protein SELMODRAFT_80718 [Selaginella moellendorffii]
          Length = 235

 Score = 38.3 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 59  LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG-TCAFVDAEHALDSIYARKL 115
           L  GG   G I E+ GP SSGKT L + + A        + A+VDA  +  +    ++
Sbjct: 3   LLKGGLKDGTITELVGPSSSGKTQLCMRSAACVAYHHKFSVAYVDASSSFSAERVLQM 60


>gi|187736652|ref|YP_001878764.1| excinuclease ABC, A subunit [Akkermansia muciniphila ATCC BAA-835]
 gi|187426704|gb|ACD05983.1| excinuclease ABC, A subunit [Akkermansia muciniphila ATCC BAA-835]
          Length = 1840

 Score = 38.3 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P GR+  + GP  SGKT+LA+HT+      G           +     R    D+  + 
Sbjct: 26  IPLGRLTVVTGPSGSGKTSLAMHTLY---AEGQRRYMETFSPYVRQFMDRMDKPDVDAVE 82

Query: 124 ISQPDTGEQA 133
              P      
Sbjct: 83  NILPAIALHQ 92


>gi|163851300|ref|YP_001639343.1| DnaB domain-containing protein [Methylobacterium extorquens PA1]
 gi|163662905|gb|ABY30272.1| DnaB domain protein helicase domain protein [Methylobacterium
           extorquens PA1]
          Length = 465

 Score = 38.3 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 39/110 (35%), Gaps = 4/110 (3%)

Query: 28  GKGAIMQLGSQGSIFEGIEV--VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
           GK     L       EG +   VS G   LD      G   G+ + + G  + GKT  AL
Sbjct: 162 GKSTAGVLARVAETREGKKRRGVSYGVPKLDAV--TLGMRPGQFIVLAGRPAMGKTLTAL 219

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135
           H    + ++GG       E   D +  R L     +    +P +     E
Sbjct: 220 HIAIAAARSGGAVGMFSLEMEADELSERVLSALAYDPRAREPISYRDIAE 269


>gi|255658788|ref|ZP_05404197.1| replicative DNA helicase [Mitsuokella multacida DSM 20544]
 gi|260849186|gb|EEX69193.1| replicative DNA helicase [Mitsuokella multacida DSM 20544]
          Length = 442

 Score = 38.3 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 10/122 (8%)

Query: 2   DYRKEMNIVD--KSKALEAALSQIQRVYG--KGAIMQLGSQGSIF----EGIEVVSSGSL 53
           D +   NI+D  + K L  A +Q    +   K  IM+     ++      GI  + +G  
Sbjct: 130 DTQPVENIMDAAEQKILAVAGAQASNGFESLKSIIMRTFEHINVLYESKGGITGLPTGFK 189

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
            LD      G     ++ +    S GKT   L+  +     GG  AF   E + + +  R
Sbjct: 190 DLDRL--TSGLQASDLILVAARPSMGKTAFTLNIASYVGLHGGKVAFFSLEMSKEQLMQR 247

Query: 114 KL 115
            L
Sbjct: 248 ML 249


>gi|260219800|emb|CBA26695.1| DNA repair protein radA homolog [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 665

 Score = 38.3 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 80/218 (36%), Gaps = 15/218 (6%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + +E   +G   LD  LG G   +G +V I G    GK+TL L  +   Q++G    +V 
Sbjct: 66  QDVERTPTGHEELDRVLGGG-MVEGGVVLIGGDPGIGKSTLLLQALDSLQRSGKNTLYVT 124

Query: 103 AEH--ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
            E   A  ++ +R+LG+D   + +         LE     + +   D+ VIDS+  +   
Sbjct: 125 GEESGAQVALRSRRLGLDHSQVKVLAEI----QLEKILATLEANRPDVAVIDSIQTVYSE 180

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220
                    +     A         LT +   S   +V +  +  +  +           
Sbjct: 181 QLTSAPGSVAQVRECAAH-------LTRAAKASGTAIVLVGHVTKEGALAGPRVLEHMVD 233

Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
             L F        R V +IK++     N+  V  +  K
Sbjct: 234 TVLYFEGDTHSQFRLVRAIKNRFGAV-NEIGVFAMTEK 270


>gi|251792754|ref|YP_003007480.1| replicative DNA helicase [Aggregatibacter aphrophilus NJ8700]
 gi|247534147|gb|ACS97393.1| replicative DNA helicase [Aggregatibacter aphrophilus NJ8700]
          Length = 435

 Score = 38.3 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 49/134 (36%), Gaps = 10/134 (7%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ--S 91
           Q+       + +    SG   LD A   GG P G  + +    S GKT  A         
Sbjct: 153 QMEQAAESADPVSGTPSGIEDLDKA-TTGGQP-GEFIIVAARPSMGKTAFAQLIAQSTLD 210

Query: 92  QKTGGTCAFVD----AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM--LVRSGA 145
           + T     F      AE  +    + +  V L+++  +   T  +  +I +    +    
Sbjct: 211 KYTDAPIQFYSQEMPAEQLVQRFMSMRSRVSLQSIRQATELTEPEWAKIAETTGYIMKNW 270

Query: 146 VDIIVIDSVAALTP 159
            D ++ID   +L+P
Sbjct: 271 QDRLLIDDEPSLSP 284


>gi|268324880|emb|CBH38468.1| conserved hypothetical protein, KaiC family [uncultured archaeon]
          Length = 243

 Score = 38.3 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 72/235 (30%), Gaps = 11/235 (4%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ--SQKTGGTCAFVDA 103
           + V +G   LD  LG GGF +G+   + G   +GKT   L  + +      GG    VD 
Sbjct: 4   KRVPTGMDMLDGILG-GGFRQGKNYLLSGETGTGKTIFGLQFLVKGFELGEGGVYVSVDE 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           + +     A   G D +  +              D L        +            EI
Sbjct: 63  KPSDVIEDANSFGFDFEERIEQNNLLILDYSSHFDQLREKSKEIDVRKIVGDLNKYLKEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
                   P     +  + + ++   I       +F +   +    +  +    TG N L
Sbjct: 123 NAKRLVIDPIAPFIVKDETIWEIRRYIR-----ALFYSLDTLDCTSV-LTSAIPTGTNQL 176

Query: 224 KFYSSVRLDIRR--VGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276
             Y           V SI+  + +   +              +   FD  YG+GI
Sbjct: 177 SQYGIEEFYASGVIVLSIRQLERMQYRRIIFVRKMRGTPYELEPYAFDFEYGKGI 231


>gi|187250739|ref|YP_001875221.1| replicative DNA helicase [Elusimicrobium minutum Pei191]
 gi|186970899|gb|ACC97884.1| Replicative DNA helicase [Elusimicrobium minutum Pei191]
          Length = 465

 Score = 38.3 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 16/93 (17%)

Query: 11  DKSKALEAALSQI----QRVYGKGAI---------MQLGSQGSI-FEGIEVVSSGSLGLD 56
           +  K ++ A  QI    Q+   KG I         M L  +  +    ++ V +G    D
Sbjct: 135 EPEKLIDLAQEQIFKISQKQDIKGFIAAKDLAEEVMHLIEKARLDKNPVKGVPTGFTEFD 194

Query: 57  IALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
                GGF K  ++ I    S GKT LAL+   
Sbjct: 195 YK--TGGFRKSDLIIIGARPSQGKTALALNVAH 225


>gi|268324453|emb|CBH38041.1| conserved hypothetical protein, KaiC family [uncultured archaeon]
          Length = 243

 Score = 38.3 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 73/235 (31%), Gaps = 11/235 (4%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ--SQKTGGTCAFVDA 103
           + V +G   LD  LG GGF +G+   + G   +GKT   L  + +      GG    VD 
Sbjct: 4   KRVPTGMDMLDGILG-GGFRQGKNYLLSGETGTGKTIFGLQFLVKGFELGEGGVYVSVDE 62

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           + +     A   G D +  +              D L  +     +            EI
Sbjct: 63  KPSDVIEDANSFGFDFEERIEQNNLLILDYSSHFDQLRENSKEIDVRKIVGDLNKYLKEI 122

Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223
                   P     +  + + ++   I       +F +   +    +  +    TG N L
Sbjct: 123 NAKRLVIDPIAPFIVKDETIWEIRRYIR-----ALFYSLDTLDCTSV-LTSAIPTGTNQL 176

Query: 224 KFYSSVRLDIRR--VGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276
             Y           V SI+  + +   +              +   FD  YG+GI
Sbjct: 177 SQYGIEEFYASGVIVLSIRQLERMQYRRIIFVRKMRGTPYELEPYAFDFEYGKGI 231


>gi|317500286|ref|ZP_07958513.1| toprim domain-containing protein [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316898329|gb|EFV20373.1| toprim domain-containing protein [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 635

 Score = 38.3 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 87/240 (36%), Gaps = 17/240 (7%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG---TCAFVDAEHALDSIYARKLGVDLK 120
            P G++  I G    GKT LA+  IA     G        ++  + L       +   +K
Sbjct: 336 IPFGKVTLIQGNPGKGKTWLAM-AIAAYCTNGKELPNALPIEPFNVLYQTAEDGIADTIK 394

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM----GESLPGMQA 176
             L        +   I +   +    D  +  ++   + R  I   +    G ++   +A
Sbjct: 395 PRLAKCGADMTRVRFINEDEKQLSMTDDRIEKAIRQNSVRLMIMDPIQAYLGANVDMNRA 454

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
             +    R L++   R+ C +V I    +       S   + G   +       L + +V
Sbjct: 455 NEIRPLFRHLSTIAERTGCAIVLI--GHLNKSSGSQSDYRSLGSIDIAAAVRSILFVEKV 512

Query: 237 GSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
              K++D        V   K+ +A     V F +   EG+ + GE  D+ ++  ++ K+G
Sbjct: 513 EKEKEQDIRV-----VYQQKDSLAKKENPVAFSLG-EEGLKWLGE-YDISIEDLLMGKAG 565


>gi|115373946|ref|ZP_01461237.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|310817904|ref|YP_003950262.1| hypothetical protein STAUR_0631 [Stigmatella aurantiaca DW4/3-1]
 gi|115369074|gb|EAU68018.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|309390976|gb|ADO68435.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 509

 Score = 38.3 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 57/161 (35%), Gaps = 10/161 (6%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
             G  GLD AL  GG  +     ++G   SGKT L LH +AQ  + G +C +        
Sbjct: 250 PFGLSGLD-ALIDGGLVEHSSTLLFGSPGSGKTLLGLHFLAQGAQQGESCLYYGFTETAP 308

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA---LTPRAEIEG 165
            + A+   V ++     +P      L            D +V D +       P+  +  
Sbjct: 309 RLVAKAAQVGMEL----EPLRTRGLLRFETRGALESLPDALVDDLLTQVDRHRPQRLLID 364

Query: 166 DMGESLPGM--QARLMSQALRKLTSSISRSKCILVFINQMR 204
            +   + G   +    S  L  LT ++   +   V   Q  
Sbjct: 365 GLEPIVLGGAFERHRTSSFLTALTHALRERRITSVMTQQTH 405


>gi|91777526|ref|YP_552734.1| hypothetical protein Bxe_B2609 [Burkholderia xenovorans LB400]
 gi|91690186|gb|ABE33384.1| Conserved hypothetical protein [Burkholderia xenovorans LB400]
          Length = 505

 Score = 38.3 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 3/80 (3%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ--SQKTGGTCAFVDAE 104
            +SSG  G+D  LG GG    R+  + G   +GKTTLAL  + +   +  GG    +   
Sbjct: 12  RLSSGIDGIDDILG-GGLTPHRMYLVEGAPGTGKTTLALQFLLKGVEEGQGGLYITLSET 70

Query: 105 HALDSIYARKLGVDLKNLLI 124
                  A   G D+    I
Sbjct: 71  RPELIAVAESHGWDISRFTI 90


>gi|227497093|ref|ZP_03927341.1| DNA repair protein RadA [Actinomyces urogenitalis DSM 15434]
 gi|226833350|gb|EEH65733.1| DNA repair protein RadA [Actinomyces urogenitalis DSM 15434]
          Length = 459

 Score = 38.3 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 50/133 (37%), Gaps = 8/133 (6%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-----GGTCAFVDA 103
           S+G   LD  LG GG   G +V + G    GK+TL L   A++         G   +V  
Sbjct: 69  STGVGELDRVLG-GGIVPGAVVLLAGEPGVGKSTLLLDVAAKAAAMSRERGEGPVLYVTG 127

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           E +   +  R   +D  +  +      E  L      V + +  ++++DSV  +      
Sbjct: 128 EESASQVRLRAERIDAIDPALLLASETE--LGALLGHVEAASPSLLIVDSVQTIASAQVE 185

Query: 164 EGDMGESLPGMQA 176
               G +     A
Sbjct: 186 GSAGGVTQVRAVA 198


>gi|260586979|ref|ZP_05852892.1| putative toprim domain protein [Blautia hansenii DSM 20583]
 gi|260542663|gb|EEX23232.1| putative toprim domain protein [Blautia hansenii DSM 20583]
          Length = 635

 Score = 38.3 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 86/240 (35%), Gaps = 17/240 (7%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG---TCAFVDAEHALDSIYARKLGVDLK 120
            P G++  I G    GKT LA+  IA     G        ++  + L       +   +K
Sbjct: 336 IPFGKVTLIQGNPGKGKTWLAM-AIAAYCTNGKELPNALPIEPFNVLYQTAEDGIADTIK 394

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM----GESLPGMQA 176
             L        +   I +   +    D  +  ++     R  I   +    G ++   +A
Sbjct: 395 PRLAKCGADMTRVRFINEEEKQLSMTDDRIEKAIRQNNVRLMIMDPIQAYLGANVDMNRA 454

Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236
             +    R L++   R+ C +V I    +       S   + G   +       L + +V
Sbjct: 455 NEIRPLFRHLSTIAERTGCAIVLI--GHLNKSSGSQSDYRSLGSIDIAAAVRSILFVEKV 512

Query: 237 GSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296
              K++D        V   K+ +A     V F +   +G+ + GE  D+ ++  ++ K+G
Sbjct: 513 EKEKEQDIRV-----VYQQKDSLAKKENPVAFSLG-EKGLKWLGE-YDISIEDLLMGKAG 565


>gi|158286922|ref|XP_001237167.2| AGAP006734-PA [Anopheles gambiae str. PEST]
 gi|157020699|gb|EAU77713.2| AGAP006734-PA [Anopheles gambiae str. PEST]
          Length = 310

 Score = 38.3 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 11/70 (15%)

Query: 21 SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
            I+  +   AI +L S       ++ V             GG   G ++EI G  +SGK
Sbjct: 3  DTIESAF--VAISRLASGSEATHNVDSV---------LFPDGGLRPGELIEISGDSNSGK 51

Query: 81 TTLALHTIAQ 90
          + L L  IA+
Sbjct: 52 SLLCLELIAR 61


>gi|330470471|ref|YP_004408214.1| DNA repair protein RadA [Verrucosispora maris AB-18-032]
 gi|328813442|gb|AEB47614.1| DNA repair protein RadA [Verrucosispora maris AB-18-032]
          Length = 431

 Score = 38.3 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 46/132 (34%), Gaps = 4/132 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQKTGGTCAFVDAEHAL 107
            +G   LD  LG GG   G +V + G    GK+TL L    Q +   G     V  E ++
Sbjct: 40  PTGVSELDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLDVAQQWAAGAGSPSLVVSGEESV 98

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
             +  R     +  L        E  L      + +    ++V+DSV  ++         
Sbjct: 99  SQVRLRA--ERMGTLHDQLYLAAESDLAAVLGHLDAVKPGLLVLDSVQTISTTGTEGVPG 156

Query: 168 GESLPGMQARLM 179
           G +        +
Sbjct: 157 GVTQVRAVTAAL 168


>gi|327189332|gb|EGE56500.1| putative protein kinase protein [Rhizobium etli CNPAF512]
          Length = 503

 Score = 38.3 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
            +G  GLD  L  GG   G +  + G   +GKTT+AL  + +  + G    ++       
Sbjct: 11  RTGVSGLDTILA-GGLSAGHVFLLEGNPGAGKTTIALQFLIEGARLGERGLYITLSETES 69

Query: 109 SIYARKLG 116
            + A    
Sbjct: 70  ELRAGAAS 77


>gi|260655510|ref|ZP_05860998.1| replicative DNA helicase [Jonquetella anthropi E3_33 E1]
 gi|260629958|gb|EEX48152.1| replicative DNA helicase [Jonquetella anthropi E3_33 E1]
          Length = 453

 Score = 38.3 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           V +G   LD     GG  +G +  +    S GKT LAL+         G    V
Sbjct: 186 VPTGFSELDRL--TGGLQRGALNILAARPSMGKTALALNVARNVAVKQGKPVLV 237


>gi|292655366|ref|YP_003535263.1| KaiC-type circadian regulator CirA [Haloferax volcanii DS2]
 gi|251829611|gb|ACT21184.1| Circ1 [Haloferax volcanii]
 gi|291371396|gb|ADE03623.1| KaiC-type circadian regulator CirA [Haloferax volcanii DS2]
          Length = 246

 Score = 38.3 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 63/214 (29%), Gaps = 20/214 (9%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT---GGTCAFV 101
            E+V +G  GLD  L  GG  K   V I G   +GK+ L L  +         GG     
Sbjct: 2   TELVKTGVEGLDSILN-GGIVKNAAVLISGNPGTGKSILGLQYLYNGVDQFDEGGLYLTF 60

Query: 102 DAEHALDSIYARKLGVD-LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           +         A  +G D     + S          +      S  +D I+ D       R
Sbjct: 61  EETEDDIREAAESIGFDRWHEYVESGEIKVYDKRTLLRDGDFSATLDRILGDLQDTNYDR 120

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE----- 215
             ++      L     +   Q L K    +  S    +   +            E     
Sbjct: 121 LVLDSLTMFQLFFDDEKEQRQYLLKFIDILKDSGLTSLLTTEQSAIFPETDIGLENFLTD 180

Query: 216 -------TTTGGNALKFYSSVRLDIRRVGSIKDK 242
                  +  G  + ++   + +   R  SIK+ 
Sbjct: 181 GNIYLIQSPAGATSNRY---IWVAKMRKQSIKNS 211


>gi|88812952|ref|ZP_01128195.1| KaiC [Nitrococcus mobilis Nb-231]
 gi|88789730|gb|EAR20854.1| KaiC [Nitrococcus mobilis Nb-231]
          Length = 478

 Score = 38.3 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 51/158 (32%), Gaps = 14/158 (8%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +S+G  GLD  L  GG    R   I G    GKTTL LH +          A  D E
Sbjct: 1   MERLSTGVDGLDEIL-HGGLIPQRSYLIRGGPGRGKTTLGLHFLT---------AVDDGE 50

Query: 105 HALDSIYAR---KLGVDLKNL-LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
            AL   +     +L  +  +L +                     + D+     V      
Sbjct: 51  SALFIGFQEPEAQLHSNAASLGIDVSAINFLSLAPDAQFFTEQQSYDVFAAADVEQQPLV 110

Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
             I   +    P          LR L + I + +  ++
Sbjct: 111 EAIIQAVEHHRPTRVFVDSLSQLRFLATDIFQYRKQVL 148



 Score = 36.4 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 60/169 (35%), Gaps = 2/169 (1%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   +D  L  GG     +  I GP  +GK+TLA   +A++ + G   +    E  +  
Sbjct: 242 TGVKKIDELL-HGGLVANTVSLITGPSGTGKSTLAALFVAEAARQGHRASVFLFEEEIA- 299

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
            + R+       L     D      +I  M        + V + +     +  +   +  
Sbjct: 300 FFLRRAKDLHLPLEEPFADGRILIEQIEPMRYLVDEFIMRVREQIEEAGVKMVVLDSVTG 359

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
               +    + + L      +SR    ++ IN++    G    S ++ +
Sbjct: 360 FEVALGGESIRERLHAFAKGLSRMGITILLINEIEATTGAFRVSEKSIS 408


>gi|281704374|gb|ADA77132.1| disrupted meiotic cDNA 1 [Bromus catharticus]
          Length = 115

 Score = 38.3 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 6/103 (5%)

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
               +      +++++SV AL          G      + + ++Q L +LT         
Sbjct: 12  LAAKMAEEPFRLLIVNSVIALFR----VDFSGRGELAERQQKLAQMLSRLTKIAEEFNVA 67

Query: 197 LVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVG 237
           +   NQ+    G       P+   GG+ L   +++RL +R+  
Sbjct: 68  VYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLRKGK 110


>gi|218247107|ref|YP_002372478.1| DNA repair protein RadA [Cyanothece sp. PCC 8801]
 gi|257060176|ref|YP_003138064.1| DNA repair protein RadA [Cyanothece sp. PCC 8802]
 gi|218167585|gb|ACK66322.1| DNA repair protein RadA [Cyanothece sp. PCC 8801]
 gi|256590342|gb|ACV01229.1| DNA repair protein RadA [Cyanothece sp. PCC 8802]
          Length = 514

 Score = 38.3 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E   SG   LD  LG GG   G +V I G    GK+TL L T  Q  +      +V AE 
Sbjct: 82  ERFPSGYGELDRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQTANQLSQRLPRILYVSAEE 140

Query: 106 A 106
           +
Sbjct: 141 S 141


>gi|170585358|ref|XP_001897451.1| DNA repair and recombination protein radA [Brugia malayi]
 gi|158595130|gb|EDP33703.1| DNA repair and recombination protein radA, putative [Brugia
          malayi]
          Length = 146

 Score = 38.3 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
          +G   +D  L  GG  KG++ E  G  +SGKT L L  IA  
Sbjct: 29 TGCPDVDTYLS-GGVAKGKLTEFVGNIASGKTQLCLSLIANQ 69


>gi|311277377|ref|YP_003939608.1| 2-aminoethylphosphonate ABC transport system, ATP-binding component
           PhnT [Enterobacter cloacae SCF1]
 gi|308746572|gb|ADO46324.1| 2-aminoethylphosphonate ABC transport system, ATP-binding component
           PhnT [Enterobacter cloacae SCF1]
          Length = 369

 Score = 38.3 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
              G ++ + GP  SGKTT+        Q  GG     D +      Y R LG+ ++N  
Sbjct: 41  IEPGEVLALIGPSGSGKTTVLRAIAGFVQPAGGRILIGDTDVTRLPPYRRGLGMVVQNYA 100

Query: 124 ISQ 126
           +  
Sbjct: 101 LFP 103


>gi|240081045|ref|ZP_04725588.1| Putative replicative DNA helicase, putative phage associated
           protein [Neisseria gonorrhoeae FA19]
 gi|268597157|ref|ZP_06131324.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268550945|gb|EEZ45964.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
          Length = 452

 Score = 38.3 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 90/268 (33%), Gaps = 30/268 (11%)

Query: 4   RKEMNIVDKSKAL-EAALSQIQRVYGKGAIMQLGSQGSIFEGIEV-VSSGSLGLDIALGI 61
            K     D+  A+ + A+ +  + +G+     +G      +G+   + +G + LD     
Sbjct: 140 EKLSKAADELAAVGKDAVKRETKTFGQTVEDLIGGLDKRLDGVRFGLPTGLMKLDGM--T 197

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK- 120
           GG P G ++ I    S GKT LA +    + K G    F   E +   +  R +  +   
Sbjct: 198 GGLPDGNLIVIAARPSMGKTVLAENIARFALKQGKAVHFQSYEMSAVELARRGMAAECNI 257

Query: 121 --------NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
                   NL  S        +            D++ +D +  L    ++   + + L 
Sbjct: 258 PMQNLKTGNLTQSDYANMPIYVSQAKEWKFDVNCDLLNVDELCFLAKEKKLTTGL-DLLV 316

Query: 173 GMQARLM--------------SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
                +M              S+ L+ L + ++    ++  +N+   K      +     
Sbjct: 317 VDHLHIMPRAGRDEVAELGNISRRLKNLAAELNIPVVLVAQLNRGNTKQADKRPNMADIR 376

Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSIT 246
           G  A++      + +    S  D +   
Sbjct: 377 GSGAIE--QDANIIMPHRESYYDGNENP 402


>gi|206479932|ref|YP_002235443.1| hypothetical protein pBCA006 [Burkholderia cenocepacia J2315]
 gi|195945088|emb|CAR57713.1| hypothetical protein pBCA006 [Burkholderia cenocepacia J2315]
          Length = 238

 Score = 38.3 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 3/112 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP-ESSGKTTLALHTIAQSQKTGGTCA 99
               +  V +G L L   L  GG+P G ++E+  P    G+  L    +A+    G    
Sbjct: 22  ARPSVRGVDTGHLELTAELPGGGWPAGALIELLAPQPGIGELRLLAPVLAR--TAGKPVM 79

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
            +   HAL  +     G+D    +         AL   +  +R+G    +++
Sbjct: 80  LIQPPHALQPLALAYWGIDPSGFVTLPAPRTADALWAAEQALRAGTCAAVLL 131


>gi|119873272|ref|YP_931279.1| hypothetical protein Pisl_1787 [Pyrobaculum islandicum DSM 4184]
 gi|119674680|gb|ABL88936.1| hypothetical protein Pisl_1787 [Pyrobaculum islandicum DSM 4184]
          Length = 226

 Score = 38.3 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           +   IE + +G+  LD+A   GG  KG +  + GP  +GKT L L  +   ++ G    +
Sbjct: 57  VATRIERLETGT-CLDVA--AGGLYKGLLHVLVGPPGAGKTWLMLKAVKSLRERGVKAEY 113

Query: 101 VDAEHALDSIYARKLGVDLK 120
           ++    +         +D+ 
Sbjct: 114 INRGGFVYVQQFGVESIDVN 133


>gi|18873747|gb|AAL16345.1| KaiC [Nostoc linckia]
 gi|18873756|gb|AAL16351.1| KaiC [Nostoc linckia]
 gi|18873761|gb|AAL16354.1| KaiC [Nostoc linckia]
 gi|18873773|gb|AAL16362.1| KaiC [Nostoc linckia]
 gi|18873776|gb|AAL16364.1| KaiC [Nostoc linckia]
          Length = 209

 Score = 38.3 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 48/149 (32%), Gaps = 22/149 (14%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KT 94
           +  +  G+E + +   G D  +  GG P  R   I G   +GKT L+L  +         
Sbjct: 11  KPPLIGGVEKIRTMIEGFDD-ISHGGLPISRTTLISGTSGTGKTLLSLQFLYNGITYFDE 69

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLIS------QPDTGEQALEI------------ 136
            G     +   +     A   G +L  L+              +  +I            
Sbjct: 70  SGVFVTFEESPSDIIKNAHIFGWNLPRLIEEGKLFILDASPDPEGQDIVGNFDLSALIER 129

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
               +R      + IDS+ A+  + E  G
Sbjct: 130 LQYAIRKYKAKRVSIDSITAVFQQYEAMG 158


>gi|315506181|ref|YP_004085068.1| abc transporter related protein [Micromonospora sp. L5]
 gi|315412800|gb|ADU10917.1| ABC transporter related protein [Micromonospora sp. L5]
          Length = 254

 Score = 38.3 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 7/123 (5%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA------EHALDSIYARKLGV 117
           F +GR   I GP  SGK+TL          T GT    D       +  L  +   K+G 
Sbjct: 38  FERGRFTAIMGPSGSGKSTLMHCLAGLDTVTKGTVMIGDTTVTGLNDAGLTKLRRDKVGF 97

Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
             +   +    T ++ + +  + +     D    D+V       E  G     L G Q +
Sbjct: 98  IFQQFNLLPTLTAQENI-LLPLSIAGRKPDPAWYDTVIDTVGLRERLGHRPAQLSGGQQQ 156

Query: 178 LMS 180
            ++
Sbjct: 157 RVA 159


>gi|238898419|ref|YP_002924100.1| DNA repair/recombination protein [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229466178|gb|ACQ67952.1| DNA repair/recombination protein [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 460

 Score = 38.3 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 6/153 (3%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           I +L       + +   S+G L  D  LG GG   G  + I G   +GK+TL L T++Q 
Sbjct: 61  IQKLSEIS--LQKLPRFSTGFLEFDRVLG-GGVVPGSAILIGGSPGAGKSTLLLQTLSQL 117

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
            +      ++  E +L  +  R     L   +       E  +E   +L +     ++VI
Sbjct: 118 AEE-MKTLYITGEESLQQVAMR--SHRLGLPMNHLDILSETGIEQICLLAQQQKPKLMVI 174

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184
           DS+  +            +     A  +++  +
Sbjct: 175 DSIQVMHMSDIQSSPGSVAQVRESAAYLTRFAK 207


>gi|42528017|ref|NP_973115.1| DNA repair protein RadA [Treponema denticola ATCC 35405]
 gi|41819062|gb|AAS13034.1| DNA repair protein RadA [Treponema denticola ATCC 35405]
          Length = 462

 Score = 38.3 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 52/150 (34%), Gaps = 19/150 (12%)

Query: 18  AALSQIQRVYGKGAIMQLGSQGSIFEGIEV-----VSSGSLGLDIALGIGGFPKGRIVEI 72
           AA   I   + K A           + IE      +S+G    D  LG G   +  I+ I
Sbjct: 47  AAERSIAEKFVKEA------HSVPLDAIEANDAVRLSTGIAEFDRVLGGGAVKRSAIL-I 99

Query: 73  YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD---SIYARKLGVDLKNLLISQPDT 129
            G    GK+TL L   + S           +           A +L + LKN+ +     
Sbjct: 100 GGEPGIGKSTLLLQAASASSSGSVKKVLYVSGEESGGQIRSRADRLNLPLKNIELLCTC- 158

Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTP 159
               LE  + ++       ++IDS+  +  
Sbjct: 159 ---RLEDVERVLNKVNPVFVIIDSIQTMYS 185


>gi|330925779|ref|XP_003301190.1| hypothetical protein PTT_12633 [Pyrenophora teres f. teres 0-1]
 gi|311324295|gb|EFQ90717.1| hypothetical protein PTT_12633 [Pyrenophora teres f. teres 0-1]
          Length = 443

 Score = 38.3 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
            +S+    LD ALG GG P+G +VEI G   +GK
Sbjct: 91  CISTLDQRLDAALG-GGIPRGYLVEITGESGAGK 123


>gi|170690692|ref|ZP_02881858.1| Non-specific serine/threonine protein kinase [Burkholderia graminis
           C4D1M]
 gi|170143941|gb|EDT12103.1| Non-specific serine/threonine protein kinase [Burkholderia graminis
           C4D1M]
          Length = 490

 Score = 38.3 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 54/170 (31%), Gaps = 9/170 (5%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
             LD+  G GG  +G    + GP   GKT L+L  +A     G  C ++           
Sbjct: 253 PHLDVMFG-GGLSQGSTATLIGPSGVGKTMLSLQFLAAGVARGERCLYL----GFYEGPQ 307

Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL----TPRAEIEGDMG 168
           R LG      +       +  L I        AVD I   ++A        R  I+G  G
Sbjct: 308 RLLGKAEAVSIPLNEAYEDGRLLIQWQPAIELAVDEIAAKALATAKNMGATRMVIDGVEG 367

Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218
                ++       L  L   +  +    + I +M +            +
Sbjct: 368 FRDSALRVERFGLFLNALLHQLREAGITTLVIEEMPLHSDHGHSRTTRVS 417


>gi|18873770|gb|AAL16360.1| KaiC [Nostoc linckia]
          Length = 209

 Score = 38.3 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 38 QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
          +  +  G+E + +   G D  +  GG P  R   I G   +GKT L+L  +  
Sbjct: 11 KPPLIGGVEKIRTMIEGFDD-ISHGGLPISRTTLISGTSGTGKTLLSLQFLYN 62


>gi|261345418|ref|ZP_05973062.1| replicative DNA helicase [Providencia rustigianii DSM 4541]
 gi|282566464|gb|EFB71999.1| replicative DNA helicase [Providencia rustigianii DSM 4541]
          Length = 456

 Score = 38.3 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 61/207 (29%), Gaps = 25/207 (12%)

Query: 37  SQGSIFEGIE-VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
            + ++ E I  ++ +G   LD    IGGF    +V I G    GKT LAL  I    + G
Sbjct: 163 ERRNLGEDISGMIKTGIEALDDK--IGGFNPTDLVFIGGRPGMGKTELALTMIEGMTRDG 220

Query: 96  GTCAFVDAEHALDSIYARKL-----------------GVDLKNLLISQPDTGEQALEITD 138
           G       E A   I  R +                   D   L        ++ + I D
Sbjct: 221 GGALLFSMEMANQQIAERMIAGSSQLPVSTLRKGQLHDEDWARLSSGLAHLMDRDIHIID 280

Query: 139 MLVRSGAVDIIVIDSVAALTPR-----AEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193
               +      + ++     P       +  G + +         ++     L     R 
Sbjct: 281 ASNLTVEQICAISENHKRQYPNLKGIFVDYLGLIKKPKAERNDLAIAAISAALKGLAKRL 340

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGG 220
               + ++Q+   +     +       
Sbjct: 341 HTPTIALSQLSRDVDKRLLNQRRPVAA 367


>gi|78213891|ref|YP_382670.1| DNA repair protein RadA [Synechococcus sp. CC9605]
 gi|78198350|gb|ABB36115.1| DNA repair protein RadA [Synechococcus sp. CC9605]
          Length = 465

 Score = 38.3 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + ++ +++GS   D  LG GG   G +V + G    GK+TL L + +       +  +V 
Sbjct: 70  QPLQRLATGSAEFDRVLG-GGLVPGSLVLVGGDPGIGKSTLLLQSASAMAAG-ASVLYVS 127

Query: 103 AEHALDSIYAR 113
           AE +   +  R
Sbjct: 128 AEESAQQVKLR 138


>gi|134297023|ref|YP_001120758.1| hypothetical protein Bcep1808_2932 [Burkholderia vietnamiensis G4]
 gi|134140180|gb|ABO55923.1| conserved hypothetical protein [Burkholderia vietnamiensis G4]
          Length = 235

 Score = 38.3 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 1/106 (0%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVE-IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
            + +G   L   L  GG+P G +VE +      G+  L    +AQS       A V   H
Sbjct: 28  TIDTGFASLSAELPGGGWPVGALVELLAAQPGCGEMRLLAPALAQSVSARRPLALVAPPH 87

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           A  +     LGV    LL  +  +   AL   +  +++G    +++
Sbjct: 88  APHASALAALGVPSDALLWLRAGSRTDALWAAEQALKTGCCGALLL 133


>gi|312879781|ref|ZP_07739581.1| primary replicative DNA helicase [Aminomonas paucivorans DSM 12260]
 gi|310783072|gb|EFQ23470.1| primary replicative DNA helicase [Aminomonas paucivorans DSM 12260]
          Length = 450

 Score = 37.9 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 51/156 (32%), Gaps = 16/156 (10%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
            + L     +I+  + +GA+            +  V +G    D     GG   G +  +
Sbjct: 163 RQVLGVTFREIEERFHQGAL------------VTGVPTGYDDFDRL--TGGLQPGSLNIL 208

Query: 73  YGPESSGKTTLALHTIAQSQKTGGT-CAFVDAEHALDSIYARKLGVDLK-NLLISQPDTG 130
               S GKT LAL+    +   GG        E   + +  R LG + K N+   +    
Sbjct: 209 AARPSMGKTALALNIAQNAAVRGGLPVLVFSLEMGAEQLAQRLLGSEAKVNIHDLRTGRF 268

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
            ++             +  +    ++L    E+   
Sbjct: 269 HESAWENLAAAAGTLSEAPLFIDDSSLLSTLELRAR 304


>gi|302037013|ref|YP_003797335.1| DNA recombination protein RadA [Candidatus Nitrospira defluvii]
 gi|300605077|emb|CBK41410.1| DNA recombination protein RadA [Candidatus Nitrospira defluvii]
          Length = 458

 Score = 37.9 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 42/173 (24%), Positives = 64/173 (36%), Gaps = 19/173 (10%)

Query: 39  GSIFEGIEVV-----SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
            +    IE+V     S+G    D  LG GG   G ++ I G    GKTTL L  +     
Sbjct: 60  ATPISDIEIVGEPRHSTGMGEFDRVLG-GGVVPGSVMLIGGDPGIGKTTLLLQALPLLAA 118

Query: 94  TGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
            G    +V  E +   I    ++LG+D K+LLI    + EQ L      ++      +V+
Sbjct: 119 PGEQVLYVSGEESPRQIKMRGQRLGIDGKHLLILGETSLEQIL----KAIQEIQPAAVVV 174

Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
           DS+  +            S     A        +L     RS   +  I  + 
Sbjct: 175 DSIQTVYTEQLTSAPGSISQVQEVA-------GQLMWFAKRSNVPVFIIGHVT 220


>gi|260435916|ref|ZP_05789886.1| DNA repair protein RadA [Synechococcus sp. WH 8109]
 gi|260413790|gb|EEX07086.1| DNA repair protein RadA [Synechococcus sp. WH 8109]
          Length = 465

 Score = 37.9 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           + ++ +++GS   D  LG GG   G +V + G    GK+TL L + +       +  +V 
Sbjct: 70  QPLQRLATGSAEFDRVLG-GGLVPGSLVLVGGDPGIGKSTLLLQSASAMAAG-ASVLYVS 127

Query: 103 AEHALDSIYAR 113
           AE +   +  R
Sbjct: 128 AEESAQQVKLR 138


>gi|156937087|ref|YP_001434883.1| hypothetical protein Igni_0293 [Ignicoccus hospitalis KIN4/I]
 gi|156566071|gb|ABU81476.1| putative circadian clock protein, KaiC [Ignicoccus hospitalis
           KIN4/I]
          Length = 275

 Score = 37.9 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 1/87 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++ V +G  G+D  L  GG P+  +V + G   +GKT  +   +    + G    +V  E
Sbjct: 3   VKRVKTGIPGMDEIL-YGGIPERNVVLLSGGPGTGKTIFSQQFLWYGLEHGEPGIYVALE 61

Query: 105 HALDSIYARKLGVDLKNLLISQPDTGE 131
                I    L          +  T  
Sbjct: 62  EHPVQIRRNMLQFGWDVRKYEKKGTFA 88


>gi|18873753|gb|AAL16349.1| KaiC [Nostoc linckia]
          Length = 209

 Score = 37.9 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 38 QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
          +  +  G+E + +   G D  +  GG P  R   I G   +GKT L+L  +  
Sbjct: 11 KPPLIGGVEKIRTMIEGFDD-ISHGGLPISRTTLISGTSGTGKTLLSLQFLYN 62


>gi|332158823|ref|YP_004424102.1| flagellar accessory protein FlaH [Pyrococcus sp. NA2]
 gi|331034286|gb|AEC52098.1| flagellar accessory protein FlaH [Pyrococcus sp. NA2]
          Length = 232

 Score = 37.9 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
            L   LG GG P G I+ I G   +GK+ ++   +      G TC++V +++       +
Sbjct: 14  ELHRRLG-GGIPAGTIMLIEGDRGTGKSIISQRLLYGFLMNGYTCSYVSSQYTTVEYIKQ 72

Query: 114 KLGVDLKNLLI 124
            + +    +  
Sbjct: 73  MMSISYDVIPF 83


>gi|257462246|ref|ZP_05626663.1| DNA repair protein RadA [Fusobacterium sp. D12]
 gi|317059915|ref|ZP_07924400.1| DNA repair protein RadA [Fusobacterium sp. D12]
 gi|313685591|gb|EFS22426.1| DNA repair protein RadA [Fusobacterium sp. D12]
          Length = 460

 Score = 37.9 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 6/121 (4%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            EG E  ++G    D  LG GG  +  ++ + G    GK+TL L   +   K G      
Sbjct: 68  VEGSERYTTGVGEFDRVLG-GGLLQSEVILLTGNPGIGKSTLLLQVASCYTKYGEVVYIS 126

Query: 102 DAEHALD-SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
             E        + +LG+    LL+    T    L I + LV      +++IDS+  +   
Sbjct: 127 GEESPSQIKNRSDRLGIRESGLLL---FTETDILLIYEYLV-KTKPKVVIIDSIQTIYNS 182

Query: 161 A 161
           A
Sbjct: 183 A 183


>gi|182412924|ref|YP_001817990.1| non-specific serine/threonine protein kinase [Opitutus terrae
          PB90-1]
 gi|177840138|gb|ACB74390.1| Non-specific serine/threonine protein kinase [Opitutus terrae
          PB90-1]
          Length = 489

 Score = 37.9 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
          ++G +GLD  L  GGF + R+  + G   SGKTTLAL  + + +K G
Sbjct: 9  TTGIVGLDDILN-GGFTENRMYLVEGDPGSGKTTLALQYLLEGRKLG 54


>gi|254168592|ref|ZP_04875435.1| KaiC domain protein [Aciduliprofundum boonei T469]
 gi|254169086|ref|ZP_04875923.1| KaiC domain protein [Aciduliprofundum boonei T469]
 gi|289595726|ref|YP_003482422.1| putative circadian clock protein, KaiC [Aciduliprofundum boonei
          T469]
 gi|197621925|gb|EDY34503.1| KaiC domain protein [Aciduliprofundum boonei T469]
 gi|197622426|gb|EDY34998.1| KaiC domain protein [Aciduliprofundum boonei T469]
 gi|289533513|gb|ADD07860.1| putative circadian clock protein, KaiC [Aciduliprofundum boonei
          T469]
          Length = 235

 Score = 37.9 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
           + +G  G D  L  GG    R+  I GP  SGKTT  +  + Q  K G
Sbjct: 2  RIRTGIPGFDE-LVQGGLVAQRVYIIAGPPGSGKTTFGIQFLLQGAKEG 49


>gi|118463820|ref|YP_880609.1| RNA polymerase sigma-70 factor [Mycobacterium avium 104]
 gi|118165107|gb|ABK66004.1| RNA polymerase sigma-70 factor [Mycobacterium avium 104]
          Length = 424

 Score = 37.9 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 15/79 (18%)

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320
            P  +    +   EG+S+      LGVK   V            R+ +GR+  + +L  +
Sbjct: 191 PPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVR----------SRIHRGRQALRDYLAAH 240

Query: 321 IEIAENIESLLRQNAGLVA 339
            +        LR + G+V+
Sbjct: 241 PD-----HDALRASLGVVS 254


>gi|221201490|ref|ZP_03574529.1| replicative DNA helicase [Burkholderia multivorans CGD2M]
 gi|221207954|ref|ZP_03580960.1| replicative DNA helicase [Burkholderia multivorans CGD2]
 gi|221172139|gb|EEE04580.1| replicative DNA helicase [Burkholderia multivorans CGD2]
 gi|221178758|gb|EEE11166.1| replicative DNA helicase [Burkholderia multivorans CGD2M]
          Length = 455

 Score = 37.9 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           V+S+G   LD AL  GG   G  V +      GKT+LAL+  + +    G 
Sbjct: 182 VISTGYEDLDRALN-GGLRPGWSVILAARPGMGKTSLALNIASHAAVDHGV 231


>gi|205372173|ref|ZP_03224988.1| iron chelate ABC transporter ATP-binding protein [Bacillus
           coahuilensis m4-4]
          Length = 255

 Score = 37.9 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 5/104 (4%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           S S+  DI+L   G  KG  V I GP  SGKTTL      +   + G+    D   ++  
Sbjct: 14  SRSIIRDISL---GVAKGEFVGIVGPNGSGKTTLLKSLYQEKLLSSGSVYIHDKPTSI-- 68

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
           I  + L  ++  L+    +  + +LE   M+ RS    +   DS
Sbjct: 69  IRIKDLAKEMAVLMQEHDENYDFSLEEMVMMGRSPHKRLFEGDS 112


>gi|116687205|ref|YP_840451.1| hypothetical protein Bcen2424_6829 [Burkholderia cenocepacia
           HI2424]
 gi|116652920|gb|ABK13558.1| conserved hypothetical protein [Burkholderia cenocepacia HI2424]
          Length = 238

 Score = 37.9 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 3/112 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP-ESSGKTTLALHTIAQSQKTGGTCA 99
               +  V +G   L   L  GG+P G ++E+  P    G+  L    +A+    G    
Sbjct: 22  ARSSVRGVDTGHPELTAELPGGGWPAGALIELLAPQPGIGELRLLAPVLAR--AAGKPVM 79

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
            +   HAL  +     G+D    +         AL   +  +R+G    +++
Sbjct: 80  LIQPPHALQPLALAYWGIDPSGFMTLPAPRTADALWAAEQALRAGTCAAVLL 131


>gi|29899134|gb|AAP03101.1| putative ATP-binding protein [Streptomyces griseochromogenes]
          Length = 274

 Score = 37.9 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 9/136 (6%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P+GR++ + GP  +GK+TL   +    Q T GT   + AE A    +  K+G   ++  
Sbjct: 27  IPQGRVIGLVGPNGAGKSTLLNMSCGLIQPTSGTIRVLGAEPAASPAHLAKVGFVAQDTP 86

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
           +    +    L +   L           D   A    A+I   +       +     +A 
Sbjct: 87  VYADLSVADHLRMGAKLNPR-------WDGPLAQRRIAQI--GLDPKHKAGRLSGGQRAQ 137

Query: 184 RKLTSSISRSKCILVF 199
             LT + ++   +L+F
Sbjct: 138 LALTIAAAKRPELLIF 153


>gi|221196214|ref|ZP_03569261.1| replicative DNA helicase [Burkholderia multivorans CGD2M]
 gi|221202887|ref|ZP_03575906.1| replicative DNA helicase [Burkholderia multivorans CGD2]
 gi|221176821|gb|EEE09249.1| replicative DNA helicase [Burkholderia multivorans CGD2]
 gi|221182768|gb|EEE15168.1| replicative DNA helicase [Burkholderia multivorans CGD2M]
          Length = 455

 Score = 37.9 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           V+S+G   LD AL  GG   G  V +      GKT+LAL+  + +    G 
Sbjct: 182 VISTGYEDLDRALN-GGLRPGWSVILAARPGMGKTSLALNIASHAAVDHGV 231


>gi|167625032|ref|YP_001675326.1| DNA repair protein RadA [Shewanella halifaxensis HAW-EB4]
 gi|167355054|gb|ABZ77667.1| DNA repair protein RadA [Shewanella halifaxensis HAW-EB4]
          Length = 457

 Score = 37.9 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 2/136 (1%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   LD  L  GG   G +  I G   +GKTT+ L  +           +  AE +L  
Sbjct: 75  TGIGELDRVL-CGGLTTGSVNIISGDPGAGKTTI-LSDLVSRMSQLMPSLYCTAEESLSQ 132

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
              R   + L     +     E ++E     +    +   VIDS+ A+            
Sbjct: 133 FKNRVNRLKLDCNEDNLYLMAETSVEAIIAELEEKKIKFAVIDSIQAVVTDLANGSPGSP 192

Query: 170 SLPGMQARLMSQALRK 185
           S     A+ ++Q  ++
Sbjct: 193 SQVKSSAQALTQYCKQ 208


>gi|157962850|ref|YP_001502884.1| DNA repair protein RadA [Shewanella pealeana ATCC 700345]
 gi|157847850|gb|ABV88349.1| DNA repair protein RadA [Shewanella pealeana ATCC 700345]
          Length = 457

 Score = 37.9 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 2/136 (1%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   LD  L  GG   G +  I G   +GKTT+ L  +           +  AE +L  
Sbjct: 75  TGIGELDRVL-CGGLTTGSVNIISGDPGAGKTTI-LSDLVSRMSQLMPSLYCTAEESLSQ 132

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
              R   + L     +     E ++E     +    +   VIDS+ A+            
Sbjct: 133 FKNRVNRLKLDCNEDNLYLMAETSVEAIIAELEEKKIKFAVIDSIQAVVTDLANGSPGSP 192

Query: 170 SLPGMQARLMSQALRK 185
           S     A+ ++Q  ++
Sbjct: 193 SQVKSSAQALTQYCKQ 208


>gi|114668141|ref|XP_001174449.1| PREDICTED: RAD51-like 3 isoform 5 [Pan troglodytes]
          Length = 289

 Score = 37.9 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 63/233 (27%), Gaps = 23/233 (9%)

Query: 53  LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGTCAFVDAEHALDSIY 111
             LD  L   G   G + EI G   SGKT + L   A           +VD+   L +  
Sbjct: 48  KSLDKLL-DAGLYTGEVTEIVGGPGSGKTQVCLCMAANVAHGLQQNVLYVDSNGGLTASR 106

Query: 112 ARKL--------------GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
             +L                 ++ +           L+     V            V  +
Sbjct: 107 LLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVV 166

Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217
                +   +          LM Q  R+L +        +V  N +              
Sbjct: 167 DSVTAVVSPLLGGQQREGLALMMQLARELKTLARDLGMAVVVTNHITRDRDSGRL---KP 223

Query: 218 TGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
             G +  F  S R+ +  +    +    +G +    + K+       Q   DI
Sbjct: 224 ALGRSWSFVPSTRILLDTI----EGAGASGGRRMACLAKSSRQPTGFQEMVDI 272


>gi|302870286|ref|YP_003838923.1| DNA repair protein RadA [Micromonospora aurantiaca ATCC 27029]
 gi|302573145|gb|ADL49347.1| DNA repair protein RadA [Micromonospora aurantiaca ATCC 27029]
          Length = 483

 Score = 37.9 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 8/134 (5%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQKTGGTCAFVDAEHAL 107
            +G   LD  LG GG   G +V + G    GK+TL L    Q +   G     V  E ++
Sbjct: 92  PTGVSELDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLDVAQQWAAGAGSPSLVVSGEESV 150

Query: 108 DSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
             +   A ++G     L ++        L   D +       ++V+DSV  ++       
Sbjct: 151 SQVRLRAERMGTLHDQLYLAAESDLSAVLGHLDAV----KPGLLVLDSVQTISTTGTEGV 206

Query: 166 DMGESLPGMQARLM 179
             G +        +
Sbjct: 207 PGGVTQVRAVTATL 220


>gi|240102338|ref|YP_002958646.1| hypothetical protein TGAM_0280 [Thermococcus gammatolerans EJ3]
 gi|239909891|gb|ACS32782.1| RecA-superfamily ATPase, Rad55-like protein [Thermococcus
           gammatolerans EJ3]
          Length = 248

 Score = 37.9 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 3/83 (3%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           I  V +G  G+D  L  GG P+  +V + G   +GKT  +   +      G    +V  E
Sbjct: 2   IRKVKTGIPGMDEIL-HGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLGMGEPGIYVALE 60

Query: 105 --HALDSIYARKLGVDLKNLLIS 125
                      + G D++     
Sbjct: 61  EHPVQVRQNMAQFGWDVRKYEEE 83


>gi|325105746|ref|YP_004275400.1| DNA repair protein RadA [Pedobacter saltans DSM 12145]
 gi|324974594|gb|ADY53578.1| DNA repair protein RadA [Pedobacter saltans DSM 12145]
          Length = 460

 Score = 37.9 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 57/199 (28%), Gaps = 24/199 (12%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +    L+  LG GG   G +V I G    GK+TL L              +V  E +   
Sbjct: 78  TPDKELNRVLG-GGIVGGSLVLIGGEPGIGKSTLMLQLALTLPNI--KVLYVSGEESEQQ 134

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
           I  R   +           T      I    +     +I+VIDS+  L            
Sbjct: 135 IKLRAERILNNPFSDCYILTETSTQNI-FKQIEILEPNIVVIDSIQTLHS---------- 183

Query: 170 SLPGMQARLMSQA---LRKLTSSISRSKCILVFINQMRM-------KIGVMFGSPETTTG 219
           +        +SQ      +L      S   +  I  +         KI            
Sbjct: 184 AHMESTPGSVSQVRECTAELLRFAKESNTPVFLIGHITKDGMIAGPKILEHMVDTVLQFE 243

Query: 220 GNALKFYSSVRLDIRRVGS 238
           G+    Y  +R    R GS
Sbjct: 244 GDRHHVYRILRAIKNRFGS 262


>gi|296106741|ref|YP_003618441.1| DNA integration/recombination/inversion protein [Legionella
           pneumophila 2300/99 Alcoy]
 gi|295648642|gb|ADG24489.1| DNA integration/recombination/inversion protein [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 473

 Score = 37.9 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 30/86 (34%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E + +G   LD  L   G+  G  + I G   + KT  A      + + G    F+  E 
Sbjct: 171 EYLRTGIKVLDRMLDNKGYQTGSQIIISGRSGTAKTLFAASFAQSAVRQGRKVLFISFEE 230

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGE 131
           + + +      +++  +         
Sbjct: 231 SPNDLIHHVKSINIDLMKDITKKKLH 256


>gi|225026046|ref|ZP_03715238.1| hypothetical protein EUBHAL_00285 [Eubacterium hallii DSM 3353]
 gi|224956632|gb|EEG37841.1| hypothetical protein EUBHAL_00285 [Eubacterium hallii DSM 3353]
          Length = 398

 Score = 37.9 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 17/24 (70%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQ 34
           +K   L+AAL  IQ+ +GK +IM+
Sbjct: 371 EKMSKLDAALDSIQKKHGKNSIMR 394


>gi|121593351|ref|YP_985247.1| replicative DNA helicase [Acidovorax sp. JS42]
 gi|120605431|gb|ABM41171.1| replicative DNA helicase [Acidovorax sp. JS42]
          Length = 470

 Score = 37.9 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 44/133 (33%), Gaps = 8/133 (6%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           ++   G+    +  +++G   LD      G   G ++ + G    GKTTLA++       
Sbjct: 182 RMNDGGA----VSGLATGFRLLDEL--TCGLQAGDLIIVAGRPGMGKTTLAVNIAENVAL 235

Query: 94  TGGTCAFVDAEHALDSIYARKLGV--DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
            GG    V  E +   +  R +     +    +      +         +       +VI
Sbjct: 236 AGGAAFVVSLEMSAAQLAERSVARFGAIDTQALRSGRISQDGFTRLSAALDRLRNQRLVI 295

Query: 152 DSVAALTPRAEIE 164
               AL   A I 
Sbjct: 296 ADDPALASVARIR 308


>gi|18873767|gb|AAL16358.1| KaiC [Nostoc linckia]
          Length = 209

 Score = 37.9 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 48/149 (32%), Gaps = 22/149 (14%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KT 94
           +  +  G+E + +   G D  +  GG P  R   I G   +GKT L+L  +         
Sbjct: 11  KPPLIGGVEKIRTMIEGFDD-ISHGGLPISRTTLISGTPGTGKTLLSLQFLYNGITYFDE 69

Query: 95  GGTCAFVDAEHALDSIYARKLGVDLKNLLIS------QPDTGEQALEI------------ 136
            G     +   +     A   G +L  L+              +  +I            
Sbjct: 70  SGVFVTFEESPSDIIKNAHIFGWNLPRLIEEGKLFILDASPDPEGQDIVGNFDLSALIER 129

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
               +R      + IDS+ A+  + E  G
Sbjct: 130 LQYAIRKYKAKRVSIDSITAVFQQYEAMG 158


>gi|220933146|ref|YP_002510054.1| DnaB domain protein helicase domain protein [Halothermothrix orenii
           H 168]
 gi|219994456|gb|ACL71059.1| DnaB domain protein helicase domain protein [Halothermothrix orenii
           H 168]
          Length = 460

 Score = 37.9 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 62/193 (32%), Gaps = 26/193 (13%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +G + LD    IGGF KG +  I    S GKT  A++      K     A +  E   
Sbjct: 185 LPTGFISLDNL--IGGFKKGHLNVIAASTSMGKTAFAINIAKNVLKRNVPVAIISLEMDA 242

Query: 108 DSIYARKL--GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT------P 159
             I  R +     +     +Q  T ++  +     + +     ++I     L        
Sbjct: 243 QEIIDRMIIQESGVNGWKYNQGQTSDEEDKRISKALDNLHELPLMISDERGLNVAQIRAR 302

Query: 160 RAEIEGDMGE----------------SLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
             + +  MG+                      AR + Q + +L +  S  +  ++ I+Q+
Sbjct: 303 LRKFKAQMGDLGLVIIDYLQMIQLPEEHAQNTARAVGQIVLQLRNMASELEVPIILISQI 362

Query: 204 RMKIGVMFGSPET 216
                        
Sbjct: 363 SRSFTNRQDKRPV 375


>gi|116334957|ref|YP_802452.1| putative replicative DNA helicase [Candidatus Carsonella ruddii PV]
 gi|116235238|dbj|BAF35086.1| putative replicative DNA helicase [Candidatus Carsonella ruddii PV]
          Length = 381

 Score = 37.9 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 6/89 (6%)

Query: 32  IMQLGS----QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87
           IM+L      +  +F     + +G   LD  L   G  KG ++ + G  S GKT+  L+ 
Sbjct: 116 IMKLNYFEMLKDYLFNKETPIYTGYKSLDNILN--GLQKGDLIILAGRPSIGKTSFLLNL 173

Query: 88  IAQSQKTGGTCAFVDAEHALDSIYARKLG 116
           +               E  +  I+ R + 
Sbjct: 174 VKNLLFLNNKIIIFSLEMTVLQIFIRLIS 202


>gi|227539098|ref|ZP_03969147.1| DNA repair protein RadA [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241048|gb|EEI91063.1| DNA repair protein RadA [Sphingobacterium spiritivorum ATCC 33300]
          Length = 461

 Score = 37.9 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 68/213 (31%), Gaps = 9/213 (4%)

Query: 31  AIMQLGSQGSIFEGI-----EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
           ++ +  ++ +I   I       + +     +  LG GG   G +V I G    GK+TL L
Sbjct: 55  SVSKRANKAAIIHEIVYQDESRILTPDQEFNRVLG-GGIVPGSLVLIGGEPGIGKSTLML 113

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
                  +      ++  E +   I  R   +   +       T      I    + +  
Sbjct: 114 QLALSIPQV--KTLYISGEESEQQIKMRAERLSQSSKANCYILTETSTQNI-FKQIEAVQ 170

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
            D+IVIDS+  L            S        + +  ++ ++ +     I    +    
Sbjct: 171 PDVIVIDSIQTLHSSQIESAPGSVSQVRECTAELLRFAKETSTPVFIVGHITKDGSIAGP 230

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           K+            G+    Y  +R    R GS
Sbjct: 231 KVLEHMVDTVLQFEGDRHHVYRILRAVKNRFGS 263


>gi|66045757|ref|YP_235598.1| hypothetical protein Psyr_2521 [Pseudomonas syringae pv. syringae
           B728a]
 gi|63256464|gb|AAY37560.1| conserved hypothetical protein [Pseudomonas syringae pv. syringae
           B728a]
          Length = 207

 Score = 37.9 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 11/137 (8%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI-Y 73
           +L+A L   +R   KG       +      +    SG   LD AL  GG+P   + EI  
Sbjct: 7   SLDALLD--ERRVWKG-------RQQSAPQVSPQPSGHALLDAALPTGGWPAAAMTEILI 57

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
               SG+  L   ++A+          V   +          GVDL+ L++ +    + A
Sbjct: 58  PANGSGELRLLWPSLARLSAIAERIVLVAPPYIPYPQAWLAAGVDLRQLVVIEASNRD-A 116

Query: 134 LEITDMLVRSGAVDIIV 150
           L   +  +RSG+   +V
Sbjct: 117 LWAAEQCLRSGSCGAVV 133


>gi|296274002|ref|YP_003656633.1| FliI/YscN family ATPase [Arcobacter nitrofigilis DSM 7299]
 gi|296098176|gb|ADG94126.1| ATPase, FliI/YscN family [Arcobacter nitrofigilis DSM 7299]
          Length = 435

 Score = 37.9 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 89/287 (31%), Gaps = 29/287 (10%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E  S+G   +D  L  G   KG+ V I+     GK+TL    +   +      A +    
Sbjct: 141 ERFSTGVKAIDSMLTSG---KGQKVGIFAGSGVGKSTLMGMIVKGCEAQIKVVALIGERG 197

Query: 106 ALDSIYAR-KLGVDLKNLLISQPDTGEQAL----------EITDMLVRSGAVDIIVIDSV 154
                +    L  +L+N +I    + E AL           I +     G   ++++DSV
Sbjct: 198 REIPEFIHYNLNNNLENTIIIAATSDESALMRKYGAFTAMAIAEFFRDKGHDVLLMMDSV 257

Query: 155 AALT-PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213
                 + EI   +GE                L   + R+    +        + V    
Sbjct: 258 TRFAMAQREIGLSIGEPPVSRGYPPS--VFALLPQLMERAGNTELGSITAFFTVLVDGDD 315

Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
                   +        +  R +        I   ++  +V+   ++           + 
Sbjct: 316 MNDPIADQSRSILDGHIVLTRELTEQGQYPPIDLLRSASRVMDKVVSPE---------HY 366

Query: 274 EGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ---GRENSKIFL 317
            G      ++ L  +  I+ + GA+     + L      RE  K FL
Sbjct: 367 NGFLKLKRVLSLIKENEILIRVGAYKQGMDKELDDALAKREKIKTFL 413


>gi|156069874|gb|ABU44876.1| ParA-DnaB [Aggregatibacter actinomycetemcomitans]
          Length = 737

 Score = 37.9 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 50/134 (37%), Gaps = 10/134 (7%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ--S 91
           Q+       + +    +G   LD A   GG P G ++ +    S GKT  A         
Sbjct: 455 QMEQAAKSADPVSGTPTGIEDLDKA-TTGGQP-GELIIVAARPSMGKTAFAQLIAQSTLD 512

Query: 92  QKTGGTCAFVD----AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM--LVRSGA 145
           + T     F      AE  +    + +  V L+++  +   T  +  ++ +    +    
Sbjct: 513 KYTDAPIQFYSQEMPAEQLVQRFISMRSRVSLQSIRQATELTELEWAKVAETTGYIMKNW 572

Query: 146 VDIIVIDSVAALTP 159
            D ++ID   +L+P
Sbjct: 573 QDRLLIDDEPSLSP 586


>gi|300770602|ref|ZP_07080481.1| DNA repair protein RadA [Sphingobacterium spiritivorum ATCC 33861]
 gi|300763078|gb|EFK59895.1| DNA repair protein RadA [Sphingobacterium spiritivorum ATCC 33861]
          Length = 461

 Score = 37.9 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 68/213 (31%), Gaps = 9/213 (4%)

Query: 31  AIMQLGSQGSIFEGI-----EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85
           ++ +  ++ +I   I       + +     +  LG GG   G +V I G    GK+TL L
Sbjct: 55  SVSKRANKAAIIHEIIYQDESRILTPDQEFNRVLG-GGIVPGSLVLIGGEPGIGKSTLML 113

Query: 86  HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
                  +      ++  E +   I  R   +   +       T      I    + +  
Sbjct: 114 QLALSIPQV--KTLYISGEESEQQIKMRAERLSQSSKANCYILTETSTQNI-FKQIEAVQ 170

Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205
            D+IVIDS+  L            S        + +  ++ ++ +     I    +    
Sbjct: 171 PDVIVIDSIQTLHSSQIESAPGSVSQVRECTAELLRFAKETSTPVFIVGHITKDGSIAGP 230

Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
           K+            G+    Y  +R    R GS
Sbjct: 231 KVLEHMVDTVLQFEGDRHHVYRILRAVKNRFGS 263


>gi|254167406|ref|ZP_04874258.1| hypothetical protein ABOONEI_2219 [Aciduliprofundum boonei T469]
 gi|197623669|gb|EDY36232.1| hypothetical protein ABOONEI_2219 [Aciduliprofundum boonei T469]
          Length = 593

 Score = 37.9 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 6/116 (5%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEV----VSSGSLGLDIAL 59
           RKE  +  K   L     +I     KG   Q     +    IE+    V +G+  LD  L
Sbjct: 309 RKEEELRAKENYLRMKEQEINAKL-KGLAEQEVELAAEEVKIEIKERKVRTGTRRLDDLL 367

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
             GGFP G  + IYGP  S K  L    +A+  + G    ++  +  +DS+    +
Sbjct: 368 -YGGFPMGSNILIYGPPYSNKEVLVYSFVAEGLRKGVPAIWILTDITVDSLREEMI 422


>gi|24371561|ref|NP_720303.1| gp12 [Enterobacteria phage ST64T]
 gi|24250788|gb|AAL15501.1| gp12 [Salmonella phage ST64T]
          Length = 478

 Score = 37.9 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 40/114 (35%), Gaps = 18/114 (15%)

Query: 4   RKEMNIVDKSKALEAALSQIQ-----------RVYGKGAIM--QLGSQGSIFEGI---EV 47
           R  M    K +A++A  +Q+            R +G+  +M   +G     F+       
Sbjct: 133 RNGMTATQKYEAIQAIFTQLTDHAKTGSRRGLRSFGE--VMEDWVGDLDKRFDPSGEQRG 190

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           +S+G   LD  L   G  KG +  I      GKTTL               A +
Sbjct: 191 MSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKKPALM 244


>gi|315503438|ref|YP_004082325.1| DNA repair protein rada [Micromonospora sp. L5]
 gi|315410057|gb|ADU08174.1| DNA repair protein RadA [Micromonospora sp. L5]
          Length = 483

 Score = 37.9 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQKTGGTCAFVDAEHAL 107
            +G   LD  LG GG   G +V + G    GK+TL L    Q +   G     V  E ++
Sbjct: 92  PTGVSELDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLDVAQQWAAGAGSPSLVVSGEESV 150

Query: 108 DSIYARK 114
             +  R 
Sbjct: 151 SQVRLRA 157


>gi|262043680|ref|ZP_06016789.1| bacteriophage Nil2 protein P DnaB family protein [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259039018|gb|EEW40180.1| bacteriophage Nil2 protein P DnaB family protein [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 462

 Score = 37.9 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 48/156 (30%), Gaps = 9/156 (5%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           +  +    EG   + +G   LD A   GG     ++ + G    GKT  AL  +      
Sbjct: 160 MQKRMDGEEGTRNLKTGIEELDDA--TGGINLQDLIVVAGRPGMGKTEFALKIVDGVTAA 217

Query: 95  GGTCAFVDAEHALDSIYARKL----GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
           GG       E A   I  R L     + +  L        E     T  +      DI +
Sbjct: 218 GGGALIFSMEMAAAQIVERSLAGSGNMSVSRLRNPLDMQDEDWARFTAAMETMNGRDIWI 277

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           +D+        E    + E+       L    +  L
Sbjct: 278 VDATDLTI---EQIRAVAETHKRRYPHLAMIVVDYL 310


>gi|223040107|ref|ZP_03610387.1| replicative DNA helicase [Campylobacter rectus RM3267]
 gi|222878584|gb|EEF13685.1| replicative DNA helicase [Campylobacter rectus RM3267]
          Length = 469

 Score = 37.9 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 53/148 (35%), Gaps = 16/148 (10%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
           + D +  +   ++ +++        +L       + I  + +G   L+      GF  G 
Sbjct: 151 VKDAAVIIADVIAHLEKQ-------KLLED----KDIVGIDTGFRQLNEM--TKGFKHGD 197

Query: 69  IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL---LIS 125
           ++ I      GKTT+ L+ +      GG   F   E   + I  R L          +++
Sbjct: 198 LIIIAARPGMGKTTICLNLMNHVLMRGGGVVFFSLEMPAEQIMLRMLSAKTSIPLQNIMT 257

Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDS 153
                E+   ++D      +  + V DS
Sbjct: 258 AKMDDEEWSRLSDACDDMASRKLFVYDS 285


>gi|221213960|ref|ZP_03586933.1| replicative DNA helicase [Burkholderia multivorans CGD1]
 gi|221166137|gb|EED98610.1| replicative DNA helicase [Burkholderia multivorans CGD1]
          Length = 455

 Score = 37.9 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           V+S+G   LD AL  GG   G  V +      GKT+LAL+  + +    G 
Sbjct: 182 VISTGYEDLDRALN-GGLRPGWSVILAARPGMGKTSLALNIASHAAVDHGV 231


>gi|260430331|ref|ZP_05784304.1| sulfate/thiosulfate import ATP-binding protein CysA 2
           (Sulfate-transporting ATPase 2) [Citreicella sp. SE45]
 gi|260418360|gb|EEX11617.1| sulfate/thiosulfate import ATP-binding protein CysA 2
           (Sulfate-transporting ATPase 2) [Citreicella sp. SE45]
          Length = 146

 Score = 37.9 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 3/116 (2%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH-ALDSIYARKLGVDLKNL 122
             KG  V + GP   G+TTL L+ +A     G      D E         R  G+  ++ 
Sbjct: 19  LEKGVFVALLGPSGWGRTTL-LNIVAGLAHAGRGRLVFDGEDITRQPAGQRSFGMVFQSY 77

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178
            + +  T  Q +      +++G+    +   V  L  R E+ G +G+      A  
Sbjct: 78  ALFRDMTVAQNIGFDLKGMKNGSDRAGIAQRVGELPGRIELPG-LGDRSRAGSASW 132


>gi|254294306|ref|YP_003060329.1| DNA repair protein RadA [Hirschia baltica ATCC 49814]
 gi|254042837|gb|ACT59632.1| DNA repair protein RadA [Hirschia baltica ATCC 49814]
          Length = 457

 Score = 37.9 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 72/239 (30%), Gaps = 21/239 (8%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M     G+       +S+    LD   G G  P   ++ I G    GK+TL L   A   
Sbjct: 58  MTFDHLGADIPQQPRLSTNIPELDRVFGGGPAPSSAVL-IGGDPGIGKSTLLLQAAASLA 116

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
             G    +V  E A+  +  R   + + N  +      +  L      +++    + VID
Sbjct: 117 DQGIDVVYVSGEEAVAQVQGRAQRLGVGNSPVKLASETD--LRTILEALKTERPKVAVID 174

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK------ 206
           SV  +   +              A+       +LT    ++ C+++ +  +         
Sbjct: 175 SVQTMWSDSLDAAPGSVGQVRACAQ-------ELTRYAKKNDCVMILVGHVTKDGQIAGP 227

Query: 207 -IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264
            +            G     Y  +R    R G         G     +   +    P +
Sbjct: 228 RVMEHMVDAVFYFEGERGHQYRILRAVKNRFGP----TDEIGVFEMSENGLHGALDPSQ 282


>gi|41057038|ref|NP_957520.1| putative primase/helicase [Streptococcus thermophilus]
 gi|34980335|gb|AAQ84062.1| putative primase/helicase [Streptococcus thermophilus]
          Length = 692

 Score = 37.9 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 63/212 (29%), Gaps = 22/212 (10%)

Query: 11  DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70
           DK K LE +     + +  G    +    +       +S+G   LD  L  GGF +G  +
Sbjct: 342 DKEKYLETSTDNYIQDFLNG----IADSANTPN----ISTGFPILDKCL-DGGFYEGLYI 392

Query: 71  EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL-----------GVDL 119
            +    S GKTTL      Q    G        E A   I A+ +           G D+
Sbjct: 393 -VGAISSLGKTTLVTQIADQVASKGHDVLIFSLEMARSEIMAKSISRHTVMEVLQTGGDM 451

Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDII-VIDSVAALTPRAEIEGDMGESLPGMQARL 178
           KN   ++  T        +   +    + +      A      E  GD+G          
Sbjct: 452 KNAKTARGITAGVRYANYNDTEKELIKNAVTAYSGYAKHIYITEGIGDLGVQQIRETVEK 511

Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
             Q        I     IL   N+        
Sbjct: 512 HIQYTGNTPLIIVDYLQILAPYNERATDKQNT 543


>gi|289627969|ref|ZP_06460923.1| hypothetical protein PsyrpaN_22998 [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
          Length = 110

 Score = 37.9 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 2/107 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEI-YGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
           +    SG   LD AL  GG+P   + EI      SG+  L   ++A+    G     V  
Sbjct: 1   VSPHPSGHALLDSALPTGGWPAAALTEILIPANGSGELRLLWPSLARLSAIGERIVLVAP 60

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            +          GVDL+ L++ +    + AL   +  +RSG+   +V
Sbjct: 61  PYIPYPQAWLAAGVDLRQLVVIEAGPRD-ALWAAEQCLRSGSCGAVV 106


>gi|254166619|ref|ZP_04873473.1| hypothetical protein ABOONEI_1711 [Aciduliprofundum boonei T469]
 gi|289596331|ref|YP_003483027.1| RecA-superfamily ATPase implicated in signal transduction-like
           protein [Aciduliprofundum boonei T469]
 gi|197624229|gb|EDY36790.1| hypothetical protein ABOONEI_1711 [Aciduliprofundum boonei T469]
 gi|289534118|gb|ADD08465.1| RecA-superfamily ATPase implicated in signal transduction-like
           protein [Aciduliprofundum boonei T469]
          Length = 593

 Score = 37.9 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 6/116 (5%)

Query: 4   RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEV----VSSGSLGLDIAL 59
           RKE  +  K   L     +I     KG   Q     +    IE+    V +G+  LD  L
Sbjct: 309 RKEEELRAKENYLRMKEQEINAKL-KGLAEQEVELAAEEVKIEIKERKVRTGTRRLDDLL 367

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115
             GGFP G  + IYGP  S K  L    +A+  + G    ++  +  +DS+    +
Sbjct: 368 -YGGFPMGSNILIYGPPYSNKEVLVYSFVAEGLRKGVPAIWILTDITVDSLREEMI 422


>gi|187929404|ref|YP_001899891.1| DnaB domain-containing protein helicase domain-containing protein
           [Ralstonia pickettii 12J]
 gi|187726294|gb|ACD27459.1| DnaB domain protein helicase domain protein [Ralstonia pickettii
           12J]
          Length = 464

 Score = 37.9 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
             + +G   LD AL  GG  +G ++ + G  S GKT L 
Sbjct: 185 SAIPTGLDALDQALN-GGMRRGNLIIVAGRPSMGKTALT 222


>gi|145596778|ref|YP_001161075.1| DNA repair protein RadA [Salinispora tropica CNB-440]
 gi|145306115|gb|ABP56697.1| DNA repair protein RadA [Salinispora tropica CNB-440]
          Length = 481

 Score = 37.9 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            +G   LD  LG GG   G +V + G    GK+TL L    Q    G   + V
Sbjct: 90  PTGVSELDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLDVAQQWAAGGANPSLV 141


>gi|325274891|ref|ZP_08140901.1| replicative DNA helicase [Pseudomonas sp. TJI-51]
 gi|324099975|gb|EGB97811.1| replicative DNA helicase [Pseudomonas sp. TJI-51]
          Length = 448

 Score = 37.9 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 58/165 (35%), Gaps = 20/165 (12%)

Query: 3   YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62
             ++ +  D  + L A + +I   +                 +  V +G   LD     G
Sbjct: 148 DERDQDFADMGEVLSAVIDEIDSNFNSET------------EVTGVPTGLPDLDAM--TG 193

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQ--SQKTGGTCAFVDAE---HALDSIYARKLGV 117
           G     ++ +    S GKT+L ++          G +      E    AL   +  +LG 
Sbjct: 194 GLQPADLIIVAARPSMGKTSLVMNWAKPILDASPGKSIQIYSMEMPARALQFRFLAQLGR 253

Query: 118 -DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
            DLK LL  +    +       + V  G  D + ID  A LTP +
Sbjct: 254 IDLKALLRGKLQDEDWPKLTAAVGVFQGMQDRLAIDDSANLTPTS 298


>gi|119713698|gb|ABL97748.1| DNA repair protein RadA [uncultured marine bacterium EB0_41B09]
          Length = 456

 Score = 37.9 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 56/145 (38%), Gaps = 6/145 (4%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL---ALHTIAQSQKTGGTCAF 100
            I    +     D  LG G  P G ++ I G    GK+T+   AL  I Q  K      +
Sbjct: 65  SIPKRKTNISEFDRVLGGGFVP-GGVILIGGDPGIGKSTILIQALSKITQDPKDNCNVIY 123

Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
           V  E + + I  R   ++L+  +       E  LE    +V+    +++VIDS+  +   
Sbjct: 124 VSGEESKEQIAMRAKRLELE--VSDISILSEINLEKIVSVVQKTKPNVVVIDSIQTIYSE 181

Query: 161 AEIEGDMGESLPGMQARLMSQALRK 185
                    +     +  +++  ++
Sbjct: 182 EMTSAPGSVTQVRECSAQLTRIAKQ 206


>gi|330953441|gb|EGH53701.1| hypothetical protein PSYCIT7_19101 [Pseudomonas syringae Cit 7]
          Length = 174

 Score = 37.9 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 11/137 (8%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI-Y 73
           +L+A L   +R   KG       +      +    SG + LD AL  GG+P   + EI  
Sbjct: 7   SLDALLD--ERRVWKG-------RQQSAPPVSPQPSGHVLLDAALPTGGWPAAALTEILI 57

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
               SG+  L   ++A+          V   +          GVDL+ L++ +    + A
Sbjct: 58  PANGSGELRLLWPSLARLSAIAERIVLVAPPYIPYPQAWLAAGVDLRQLVVIEASPRD-A 116

Query: 134 LEITDMLVRSGAVDIIV 150
           L   +  +RSG+   +V
Sbjct: 117 LWAAEQCLRSGSCGAVV 133


>gi|229821758|ref|YP_002883284.1| DNA repair protein RadA [Beutenbergia cavernae DSM 12333]
 gi|229567671|gb|ACQ81522.1| DNA repair protein RadA [Beutenbergia cavernae DSM 12333]
          Length = 478

 Score = 37.9 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK--TGGTCAFVDAEHA 106
            +G   LD  LG GG   G +V + G    GK+TL L   A++    TG    +V  E +
Sbjct: 88  PTGVGELDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLDVAAKAATSGTGRRVLYVTGEES 146

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166
              +  R   +      +      +  L      + +    ++V+DSV  +   A+++G 
Sbjct: 147 ASQVRLRAERIGALRPRLYLAAESD--LATVLGQIEACDPQLLVLDSVQTIAS-ADVDGA 203

Query: 167 MG 168
            G
Sbjct: 204 AG 205


>gi|317031016|ref|XP_001392632.2| DNA repair protein (Rad57) [Aspergillus niger CBS 513.88]
          Length = 561

 Score = 37.9 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
             +S+    LD  L  GG P G + E+ G   SGK
Sbjct: 103 SAISTLDPTLDALL-DGGIPTGYVTEVTGESGSGK 136


>gi|291541582|emb|CBL14692.1| hypothetical protein RBR_02610 [Ruminococcus bromii L2-63]
          Length = 302

 Score = 37.9 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 58/207 (28%), Gaps = 27/207 (13%)

Query: 70  VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL---LISQ 126
           + + GP  SGKT  +L+            A +D EH     YA +  ++        ++ 
Sbjct: 16  IAVTGPSGSGKTLSSLYLAYGITGDWSKVALIDTEHERGRFYASRTDLNTGKFLYASMTP 75

Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186
           P T ++ +E           D  ++    +     E      +S    Q           
Sbjct: 76  PYTPDKYIEYVKSAADIVGPDGAIVVDSFSHCWDNEGGVLDIKSQIAQQRGKNDYTAWDE 135

Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
              I  +    +        I                K   ++ ++ R            
Sbjct: 136 AGKIQNNLVNTILSVDCHTII------------TMRAKMAYAMEVNDR------------ 171

Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYG 273
           G    VK+    +     + EFD+ + 
Sbjct: 172 GKTVPVKIGLAPVQRENTEYEFDMCFQ 198


>gi|134077146|emb|CAK45487.1| unnamed protein product [Aspergillus niger]
          Length = 516

 Score = 37.9 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
             +S+    LD  L  GG P G + E+ G   SGK
Sbjct: 77  SAISTLDPTLDALL-DGGIPTGYVTEVTGESGSGK 110


>gi|163846528|ref|YP_001634572.1| replicative DNA helicase [Chloroflexus aurantiacus J-10-fl]
 gi|222524314|ref|YP_002568785.1| replicative DNA helicase [Chloroflexus sp. Y-400-fl]
 gi|163667817|gb|ABY34183.1| replicative DNA helicase [Chloroflexus aurantiacus J-10-fl]
 gi|222448193|gb|ACM52459.1| replicative DNA helicase [Chloroflexus sp. Y-400-fl]
          Length = 451

 Score = 37.9 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 49/141 (34%), Gaps = 19/141 (13%)

Query: 14  KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73
           + +    SQI+            S       +  V +G   LD     GG     ++ + 
Sbjct: 167 RVVNTLFSQIE------------SMQERRGEVIGVPTGYHDLDEL--TGGLQPSDLIILA 212

Query: 74  GPESSGKTTLALHTIAQSQ-KTGGTCAFVDAEHALDSIYARKL----GVDLKNLLISQPD 128
              S GKT+LAL           GT A    E + + +  R L    G+D++ L      
Sbjct: 213 ARPSVGKTSLALSLAYNVAFHANGTVAIFSLEMSREQLVQRMLAMHTGIDMQRLRTGNLR 272

Query: 129 TGEQALEITDMLVRSGAVDII 149
             E +L I  + V S     I
Sbjct: 273 GEELSLAIEGLGVLSELPIYI 293


>gi|71907569|ref|YP_285156.1| SOS cell division inhibitor SulA [Dechloromonas aromatica RCB]
 gi|71847190|gb|AAZ46686.1| SOS cell division inhibitor SulA [Dechloromonas aromatica RCB]
          Length = 240

 Score = 37.9 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESS-GKTTLALHTIAQSQKTGGTCAFV 101
            + SG   LD  L  GG+P+G + EI     S G+ +L L  +A+    GG  A V
Sbjct: 31  AIPSGHAELDAELPGGGWPRGNLTEILVDRGSVGEMSLLLPALAKLSAEGGWLALV 86


>gi|238922802|ref|YP_002936315.1| hypothetical protein EUBREC_0390 [Eubacterium rectale ATCC 33656]
 gi|238874474|gb|ACR74181.1| Hypothetical protein EUBREC_0390 [Eubacterium rectale ATCC 33656]
          Length = 322

 Score = 37.9 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 49/274 (17%), Positives = 97/274 (35%), Gaps = 47/274 (17%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTI-------------AQSQKTGGTCAFVDAEHAL--- 107
            P G++  + G    GKTT  LH                  Q+      + +AE +L   
Sbjct: 30  IPYGKLTIVQGDPGEGKTTFILHLAALLTKGEPLPNEEVDVQREPVNVIYQNAEDSLEDT 89

Query: 108 --DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165
               +       +   ++    D      E     +R     ++V+D + A        G
Sbjct: 90  IKPRLLEAGADCNRVLVIDESVDCLSMTDERLVRAIRETGAKMVVLDPIQA------YLG 143

Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225
              +     +A  +   L++L +      C ++ I      +     S  T  G  ++ F
Sbjct: 144 ADVDMH---RANEIRPVLKQLGNIAEEYGCAIILI----GHMNKASSSKSTYRGLGSIDF 196

Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285
            ++ R  +  VG IKD  ++      +   K+ +A     + F +   +G ++ G + D+
Sbjct: 197 QATARSVLV-VGRIKDDTTL----RVIAHDKSSLAPEGTSIAFRMDKEKGFTWEG-VYDI 250

Query: 286 GVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319
            V+  +           G+  GQ  +++K FL E
Sbjct: 251 TVEELL----------SGESRGQKTKDAKSFLAE 274


>gi|284032388|ref|YP_003382319.1| ABC transporter-like protein [Kribbella flavida DSM 17836]
 gi|283811681|gb|ADB33520.1| ABC transporter related protein [Kribbella flavida DSM 17836]
          Length = 299

 Score = 37.9 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 13/150 (8%)

Query: 51  GSLGLD-IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           G L LD + L     P GR++ + GP  +GK+TL        + T G+   + +  A ++
Sbjct: 23  GKLALDGVDLS---IPPGRVIGLVGPNGAGKSTLLHLACGLIEPTAGSLTVLGSTPAANA 79

Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169
            +  ++G   +N  +    T  + L +   L           DS  AL  R   +  +  
Sbjct: 80  SHLARVGFVAQNTPVYGSFTVAEHLALGQKLNP-------AWDS--ALAQRRIRQVGLNP 130

Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVF 199
           S          +A   LT + ++   +L+F
Sbjct: 131 SQKAGHLSGGQRAQLALTIAAAKRPELLIF 160


>gi|120600209|ref|YP_964783.1| replicative DNA helicase [Shewanella sp. W3-18-1]
 gi|146291863|ref|YP_001182287.1| replicative DNA helicase [Shewanella putrefaciens CN-32]
 gi|120560302|gb|ABM26229.1| primary replicative DNA helicase [Shewanella sp. W3-18-1]
 gi|145563553|gb|ABP74488.1| primary replicative DNA helicase [Shewanella putrefaciens CN-32]
 gi|319425097|gb|ADV53171.1| replicative DNA helicase [Shewanella putrefaciens 200]
          Length = 468

 Score = 37.5 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 14/104 (13%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
              LE  + +I+++Y            +   G+  VSSG   LD      GF  G ++ +
Sbjct: 180 KTILEKTVDKIEKLY-----------NNPHNGVTGVSSGFSDLDKM--TAGFQSGDLIIV 226

Query: 73  YGPESSGKTTLALHTIAQSQK-TGGTCAFVDAEHALDSIYARKL 115
               S GKTT A++   Q+             E   + I  R L
Sbjct: 227 AARPSMGKTTFAMNLCEQAAMNEDKPVLIFSLEMPSEQIMMRML 270


>gi|200389653|ref|ZP_03216264.1| replicative DNA helicase homolog [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199602098|gb|EDZ00644.1| replicative DNA helicase homolog [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 478

 Score = 37.5 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 46/130 (35%), Gaps = 19/130 (14%)

Query: 4   RKEMNIVDKSKALEAALSQIQ-----------RVYGKGAIMQ-----LGSQGSIFEGIEV 47
           R  M    K +A++A  +Q+            R +G+  +M+     L  +         
Sbjct: 133 RNGMTATQKYEAIQAIFTQLTDHAKTGSRRGLRSFGE--VMEDWVSDLEKRFDPSGEQRG 190

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL-ALHTIAQSQKTGGTCAFVDAEHA 106
           +S+G   LD  L   G  KG +  I      GKTTL +   I  +            E  
Sbjct: 191 MSTGIPSLDRMLSPKGLVKGSLFIIGARPKMGKTTLYSQMAINCAVHEKKPALMFSLEMP 250

Query: 107 LDSIYARKLG 116
            D I  + +G
Sbjct: 251 SDQILEKLVG 260


>gi|91977530|ref|YP_570189.1| putative chromosome partitioning protein ParA [Rhodopseudomonas
           palustris BisB5]
 gi|91683986|gb|ABE40288.1| putative chromosome partitioning protein ParA [Rhodopseudomonas
           palustris BisB5]
          Length = 307

 Score = 37.5 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 56/186 (30%), Gaps = 9/186 (4%)

Query: 77  SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136
            SGK+TLALH      K G   A +D +      + R L      +         +  E 
Sbjct: 24  GSGKSTLALHIAVALLKAGQRVATIDLDC-RQQSFTRNLNNR--RIWARHTGLDLELPEH 80

Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196
             + +           +      +A    +       +        L +L  S++ +   
Sbjct: 81  RCIKLGETMQIADNESAEFQQFAQAVAAVEHAFDFIVIDTPGSDSYLMRLAHSMADTLVT 140

Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS----ITGNQTRV 252
              IN   +   V+     TT        YSS+ LD RR     D       +  N+   
Sbjct: 141 P--INDSFLDFDVLGAVDPTTYSVTGPSHYSSMVLDARRKRRQLDGVDTDWIVVRNRLST 198

Query: 253 KVVKNK 258
              +N 
Sbjct: 199 LGARNN 204


>gi|238758585|ref|ZP_04619761.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia
           aldovae ATCC 35236]
 gi|238703285|gb|EEP95826.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia
           aldovae ATCC 35236]
          Length = 548

 Score = 37.5 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 3/113 (2%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG +    E +   S G   L   L     PKG IV I GP  +GK+TL      Q Q 
Sbjct: 311 RLGDKVLEVEHLSK-SYGDRLLIDDLTFA-LPKGAIVGIIGPNGAGKSTLFRMLSGQEQP 368

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
             GT +  D          R   +D    +  +   G+  ++I +  + S A 
Sbjct: 369 DSGTISLGDTVQLASVDQFRD-NMDDSKTVWEEVSGGQDIMKIGNFEIPSRAY 420


>gi|50955084|ref|YP_062372.1| ABC transporter, ATP-binding protein [Leifsonia xyli subsp. xyli
           str. CTCB07]
 gi|50951566|gb|AAT89267.1| ABC transporter, ATP-binding protein [Leifsonia xyli subsp. xyli
           str. CTCB07]
          Length = 243

 Score = 37.5 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIG-GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
             +    +   +G+  ++   G+  G P G+   + GP  SGK+TL          T G 
Sbjct: 2   ARVESATKTYGTGAGRVNALDGVTLGIPAGQFTAVMGPSGSGKSTLMHVMAGLDSVTSGR 61

Query: 98  CAFVDAE 104
               D E
Sbjct: 62  VFLGDTE 68


>gi|290996776|ref|XP_002680958.1| predicted protein [Naegleria gruberi]
 gi|284094580|gb|EFC48214.1| predicted protein [Naegleria gruberi]
          Length = 1539

 Score = 37.5 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 7/61 (11%)

Query: 310  RENSKIFLRENIEIAENIESL----LRQNAGLVADSLLQEPAINTK---DDADKDDTDNV 362
            +E  K +L+E  ++ E ++      LR+     AD LL     +++    + D+ D++N 
Sbjct: 1196 KEKVKQYLKEKKDMEEYLKQFLPPPLREKGFDDADELLDSENNSSERSGSETDESDSNNE 1255

Query: 363  E 363
            E
Sbjct: 1256 E 1256


>gi|238797534|ref|ZP_04641032.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia
           mollaretii ATCC 43969]
 gi|238718675|gb|EEQ10493.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia
           mollaretii ATCC 43969]
          Length = 548

 Score = 37.5 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 3/113 (2%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG +    E +   S G   L   L     PKG IV I GP  +GK+TL      Q Q 
Sbjct: 311 RLGDKVLEVEHLSK-SYGDRLLIDDLTFA-LPKGAIVGIIGPNGAGKSTLFRMLSGQEQP 368

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
             GT +  D          R   +D    +  +   G+  ++I +  + S A 
Sbjct: 369 DSGTISLGDTVQLASVDQFRD-NMDDSKTVWEEVSGGQDIMKIGNFEIPSRAY 420


>gi|307352382|ref|YP_003893433.1| putative circadian clock protein KaiC [Methanoplanus petrolearius
           DSM 11571]
 gi|307155615|gb|ADN34995.1| putative circadian clock protein, KaiC [Methanoplanus petrolearius
           DSM 11571]
          Length = 232

 Score = 37.5 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
            V  G  GLD  +  GG  +G I  I G   +GKTT AL       K   T  ++  E  
Sbjct: 5   RVRMGIDGLDEMM-DGGLIEGSICSIIGTYGTGKTTFALQFAYDGLKNNETVVYISLEEK 63

Query: 107 LDSIYAR 113
            +SIY +
Sbjct: 64  KESIYEK 70


>gi|291618322|ref|YP_003521064.1| CysA [Pantoea ananatis LMG 20103]
 gi|291153352|gb|ADD77936.1| CysA [Pantoea ananatis LMG 20103]
 gi|327394712|dbj|BAK12134.1| sulfate/thiosulfate import ATP-binding protein CysA [Pantoea
           ananatis AJ13355]
          Length = 362

 Score = 37.5 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 24/103 (23%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           ++QI + +G+ A+  L                 + LD        P G++V + GP  SG
Sbjct: 5   INQINKSFGRTAV--LND---------------ISLD-------IPSGQMVALLGPSGSG 40

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           KTTL         +  G   F D + +      R++G   ++ 
Sbjct: 41  KTTLLRIIAGLEHQNSGQIRFHDHDVSRLHARDRQVGFVFQHY 83


>gi|154149650|ref|YP_001403268.1| hypothetical protein Mboo_0101 [Candidatus Methanoregula boonei
          6A8]
 gi|153998202|gb|ABS54625.1| conserved hypothetical protein [Methanoregula boonei 6A8]
          Length = 206

 Score = 37.5 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
          S+G +GL++ L  GGFP G IV +YG   SG    A+       + G
Sbjct: 20 STGIVGLNLLL-DGGFPAGTIVMVYGTPISGVELAAMQFWKVEGEEG 65


>gi|159040190|ref|YP_001539443.1| DNA repair protein RadA [Salinispora arenicola CNS-205]
 gi|157919025|gb|ABW00453.1| DNA repair protein RadA [Salinispora arenicola CNS-205]
          Length = 499

 Score = 37.5 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 41/114 (35%), Gaps = 2/114 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           +   +G   LD  LG GG   G +V + G    GK+TL L    Q    GGT   +    
Sbjct: 87  QARPTGVSELDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLDVAQQWAV-GGTSPSLVVSG 144

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
                  R     +  L        E  L      + +    ++V+DSV  ++ 
Sbjct: 145 EESVSQVRLRAERMGTLHDQLYLAAESDLAAVLGHLDAVKPGLLVLDSVQTIST 198


>gi|238782713|ref|ZP_04626743.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia
           bercovieri ATCC 43970]
 gi|238716373|gb|EEQ08355.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia
           bercovieri ATCC 43970]
          Length = 548

 Score = 37.5 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 3/113 (2%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG +    E +   S G   L   L     PKG IV I GP  +GK+TL      Q Q 
Sbjct: 311 RLGDKVLEVEHLSK-SYGDRLLIDDLTFA-LPKGAIVGIIGPNGAGKSTLFRMLSGQEQP 368

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
             GT +  D          R   +D    +  +   G+  ++I +  + S A 
Sbjct: 369 DSGTISLGDTVQLASVDQFRD-NMDDSKTVWEEVSGGQDIMKIGNFEIPSRAY 420


>gi|284005644|ref|YP_003391464.1| hypothetical protein Slin_6709 [Spirosoma linguale DSM 74]
 gi|283820828|gb|ADB42665.1| conserved hypothetical protein [Spirosoma linguale DSM 74]
          Length = 845

 Score = 37.5 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 41/154 (26%), Gaps = 4/154 (2%)

Query: 63  GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122
           G+   R   I GP  SGK+    H +      G     VD  H         LG      
Sbjct: 447 GWVTNRNKFILGPSGSGKSFFTNHALRSFHVQGSHAVIVDVGH-SYRGLCDMLGGLYLTY 505

Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182
              +P        I + L+        +   +  L  R++    M E      A  ++Q 
Sbjct: 506 SEEEPINFN-PFFIENRLLPDVEKKEAIKVLLQTLWKRSDERQTMSEYTALSDA--VTQY 562

Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPET 216
                 +   +        +        + +   
Sbjct: 563 FETYLPNNPDTFPCFNSFYEFMQSDFPKYLAEHK 596


>gi|188026522|ref|ZP_02962442.2| hypothetical protein PROSTU_04560 [Providencia stuartii ATCC 25827]
 gi|188019277|gb|EDU57317.1| hypothetical protein PROSTU_04560 [Providencia stuartii ATCC 25827]
          Length = 548

 Score = 37.5 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 42/113 (37%), Gaps = 3/113 (2%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG +    E +   S G   L   L     PKG IV I GP  +GK+TL      Q Q 
Sbjct: 311 RLGDKVIEVENLSK-SYGDRVLIDNLSFS-IPKGAIVGIIGPNGAGKSTLFRMISGQEQP 368

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
             GT    D          R   +D    +  +   G+  + I +  + S A 
Sbjct: 369 DSGTITLGDTVKIASVDQFRD-SMDDSKTVWEEISNGQDIMRIGNFEIPSRAY 420


>gi|145591103|ref|YP_001153105.1| hypothetical protein Pars_0868 [Pyrobaculum arsenaticum DSM 13514]
 gi|145282871|gb|ABP50453.1| family 417, putative ATP binding [Pyrobaculum arsenaticum DSM
           13514]
          Length = 411

 Score = 37.5 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 8/119 (6%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
              E +++G+  +D ALG GG   G +V + GP     + L + T A   + G    +  
Sbjct: 204 PPSEKLTTGAPEIDEALG-GGVWSGSLVAVVGPHDGLASKLMVLTAAALAREGRRILYHH 262

Query: 103 AE-HALDSIYARKLGVDLKNL---LISQPDTGEQAL---EITDMLVRSGAVDIIVIDSV 154
            +       +A  LGV L+         P    + L     +  +V SG  D+   D  
Sbjct: 263 HKVFPTFVKFAENLGVKLQRPNLDWYYHPVVEHKVLTWWYKSAKIVESGGYDVHFADQY 321


>gi|126698203|ref|YP_001087100.1| putative phage-related replicative helicase [Clostridium difficile
           630]
 gi|254974231|ref|ZP_05270703.1| putative phage-related replicative helicase [Clostridium difficile
           QCD-66c26]
 gi|255091628|ref|ZP_05321106.1| putative phage-related replicative helicase [Clostridium difficile
           CIP 107932]
 gi|255099731|ref|ZP_05328708.1| putative phage-related replicative helicase [Clostridium difficile
           QCD-63q42]
 gi|255305616|ref|ZP_05349788.1| putative phage-related replicative helicase [Clostridium difficile
           ATCC 43255]
 gi|255313357|ref|ZP_05354940.1| putative phage-related replicative helicase [Clostridium difficile
           QCD-76w55]
 gi|255516044|ref|ZP_05383720.1| putative phage-related replicative helicase [Clostridium difficile
           QCD-97b34]
 gi|255649140|ref|ZP_05396042.1| putative phage-related replicative helicase [Clostridium difficile
           QCD-37x79]
 gi|260682319|ref|YP_003213604.1| putative phage-related replicative helicase [Clostridium difficile
           CD196]
 gi|260685918|ref|YP_003217051.1| putative phage-related replicative helicase [Clostridium difficile
           R20291]
 gi|306519254|ref|ZP_07405601.1| putative phage-related replicative helicase [Clostridium difficile
           QCD-32g58]
 gi|115249640|emb|CAJ67457.1| putative replicative helicase DnaB-like [Clostridium difficile]
 gi|260208482|emb|CBA61089.1| putative phage-related replicative helicase [Clostridium difficile
           CD196]
 gi|260211934|emb|CBE02418.1| putative phage-related replicative helicase [Clostridium difficile
           R20291]
          Length = 433

 Score = 37.5 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           G   LD    IGG  KG +  I      GKT LAL  +  S K G    F+  E   + +
Sbjct: 170 GIKLLDT--TIGGLFKGELTTIAAKSGVGKTALALQIMLNSFKQGKKTLFISREMTSEQV 227

Query: 111 YARKL 115
           + R +
Sbjct: 228 FMRNI 232


>gi|297197703|ref|ZP_06915100.1| phosphonate C-P lyase system protein PhnK [Streptomyces sviceus
           ATCC 29083]
 gi|297146832|gb|EDY61456.2| phosphonate C-P lyase system protein PhnK [Streptomyces sviceus
           ATCC 29083]
          Length = 269

 Score = 37.5 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 50  SGSLGLDIALGIG-GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +G   LD   G+   FP GR   I GP  SGK+TL          T G     D +
Sbjct: 31  TGVRALD---GVSVDFPAGRFTAIMGPSGSGKSTLMHCAAGLDTLTEGASYVGDTD 83


>gi|255654641|ref|ZP_05400050.1| putative phage-related replicative helicase [Clostridium difficile
           QCD-23m63]
 gi|296449416|ref|ZP_06891197.1| probable phage-related replicative helicase [Clostridium difficile
           NAP08]
 gi|296880647|ref|ZP_06904602.1| probable phage-related replicative helicase [Clostridium difficile
           NAP07]
 gi|296261762|gb|EFH08576.1| probable phage-related replicative helicase [Clostridium difficile
           NAP08]
 gi|296428360|gb|EFH14252.1| probable phage-related replicative helicase [Clostridium difficile
           NAP07]
          Length = 433

 Score = 37.5 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
           G   LD    IGG  KG +  I      GKT LAL  +  S K G    F+  E   + +
Sbjct: 170 GIKLLDT--TIGGLFKGELTTIAAKSGVGKTALALQIMLNSFKQGKKTLFISREMTSEQV 227

Query: 111 YARKL 115
           + R +
Sbjct: 228 FMRNI 232


>gi|187921257|ref|YP_001890289.1| putative circadian clock protein, KaiC [Burkholderia phytofirmans
          PsJN]
 gi|187719695|gb|ACD20918.1| putative circadian clock protein, KaiC [Burkholderia phytofirmans
          PsJN]
          Length = 497

 Score = 37.5 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
           +SSG  G+D  LG GG    R+  + G   +GKTTLAL  + +  + G
Sbjct: 4  RLSSGIDGIDDILG-GGLTPHRMYLVEGAPGTGKTTLALQFLLKGVEEG 51


>gi|254431957|ref|ZP_05045660.1| DNA repair protein RadA [Cyanobium sp. PCC 7001]
 gi|197626410|gb|EDY38969.1| DNA repair protein RadA [Cyanobium sp. PCC 7001]
          Length = 480

 Score = 37.5 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 65/155 (41%), Gaps = 11/155 (7%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            +E ++SG   LD  LG GG   G +V + G    GK+TL L +     +   +  +V A
Sbjct: 73  PLERLASGYGELDRVLG-GGLVPGSLVLVGGDPGIGKSTLLLQSAQAMAQR-ASVLYVSA 130

Query: 104 EHALDSI--YARKLGVDLKNLLISQPDTGEQA-----LEITDMLVRSGAVDIIVIDSVAA 156
           E +   +    ++LG         +     Q      LE+    + +    + ++DS+ A
Sbjct: 131 EESAQQVKLRWQRLGPADAVAPGREQGGDLQLLAETDLELVLQELEALRPAVAIVDSIQA 190

Query: 157 LTPRAEIEGDMGE-SLPGMQARLMSQALRKLTSSI 190
           L   AE+    G  +     A  +++  ++  +++
Sbjct: 191 LH-DAELSSAPGSVAQVRECAAALARIAKRQDTAL 224


>gi|171058405|ref|YP_001790754.1| ABC transporter-like protein [Leptothrix cholodnii SP-6]
 gi|170775850|gb|ACB33989.1| ABC transporter-related protein [Leptothrix cholodnii SP-6]
          Length = 279

 Score = 37.5 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 45/127 (35%), Gaps = 5/127 (3%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD--AEHALDSIYARKLGVDLKN 121
            P G  V + GP  +GKTTL L  +A +         +D  A   L     ++L   L  
Sbjct: 30  VPAGTAVAVIGPSGAGKTTL-LQVLACAMPPAAGALTLDGVAPWQLPRRALQRLRGRLFL 88

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
                P    Q   +   ++      + +  S+ +L   ++I            A  + +
Sbjct: 89  APQVPPLPPRQ--RVVTAVLAGRLPAMSLWASLRSLFYPSDIPAAHAALDRFDLADKLFE 146

Query: 182 ALRKLTS 188
            + +L+ 
Sbjct: 147 RVDRLSG 153


>gi|116687245|ref|YP_840491.1| hypothetical protein Bcen2424_6869 [Burkholderia cenocepacia
           HI2424]
 gi|116652960|gb|ABK13598.1| conserved hypothetical protein [Burkholderia cenocepacia HI2424]
          Length = 238

 Score = 37.5 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 3/112 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP-ESSGKTTLALHTIAQSQKTGGTCA 99
               +  V +G   L   L  GG+P G ++E+  P    G+  L    +++    G    
Sbjct: 22  ARSSVRGVDTGHPELTAELPGGGWPAGALIELLAPQPGIGELRLLAPVLSR--AAGKPVM 79

Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
            +   HAL  +     G+D    +         AL   +  +R+G    +++
Sbjct: 80  LIQPPHALQPLALAYWGIDPSGFVTLPAPRTADALWAAEQALRAGTCAAVLL 131


>gi|303237950|ref|ZP_07324501.1| DNA repair protein RadA [Prevotella disiens FB035-09AN]
 gi|302481868|gb|EFL44912.1| DNA repair protein RadA [Prevotella disiens FB035-09AN]
          Length = 459

 Score = 37.5 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 45/131 (34%), Gaps = 5/131 (3%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
            L+  LG GG   G +V I G    GK+TL L TI  + +         +          
Sbjct: 83  ELNRVLG-GGLVVGSMVLIGGEPGIGKSTLTLQTILNTNRK----VLYVSGEESPQQIKM 137

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173
           +       L  +     E ++E     ++    +++V+DS+  +            +   
Sbjct: 138 RAQRIADVLPDNIIILSETSIEKIFQSIKDVQPELLVVDSIQTVQTETVASSAGSITQIR 197

Query: 174 MQARLMSQALR 184
             A  + Q  +
Sbjct: 198 ESAAALLQLAK 208


>gi|253581850|ref|ZP_04859074.1| DNA repair protein RadA [Fusobacterium varium ATCC 27725]
 gi|251836199|gb|EES64736.1| DNA repair protein RadA [Fusobacterium varium ATCC 27725]
          Length = 463

 Score = 37.5 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 40/118 (33%), Gaps = 6/118 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            E +    +G    D  LG GG  +G +V + G    GK+TL L    +    G      
Sbjct: 68  MEDMYRYKTGIEEFDRVLG-GGLLQGEVVLVTGNPGIGKSTLLLQVADRYTSYGTVIYIS 126

Query: 102 DAEHALD-SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
             E          +L +  K+L +          E            ++++DS+  L 
Sbjct: 127 GEESPSQVKNRGERLKISAKDLFLMAETDVSNIYEYLIA----KKPKVVIVDSIQTLY 180


>gi|148683731|gb|EDL15678.1| RAD51-like 3 (S. cerevisiae), isoform CRA_e [Mus musculus]
          Length = 264

 Score = 37.5 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 58/199 (29%), Gaps = 31/199 (15%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-----------TGGTCAF-- 100
            LD  L   G   G + EI G   SGKT + L   A                GG  A   
Sbjct: 23  SLDKLL-DAGLYTGEVTEIVGGPGSGKTQVCLCVAANVAHSLQQNVLYVDSNGGMTASRL 81

Query: 101 --------VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
                    D E    ++   ++        +       +          SGAV ++++D
Sbjct: 82  LQLLQARTQDEEKQASALQRIQVVRSFDIFRMLDMLQDLRGTIAQQEATSSGAVKVVIVD 141

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SV A      +   +          LM Q  R+L          +V  N +        G
Sbjct: 142 SVTA------VAAPLLGGQQREGLALMMQLARELKILARDLGVAVVVTNHLTRDWD---G 192

Query: 213 SPETTTGGNALKFYSSVRL 231
                  G +  F  S R+
Sbjct: 193 RRFKPALGRSWSFVPSTRI 211


>gi|148683729|gb|EDL15676.1| RAD51-like 3 (S. cerevisiae), isoform CRA_c [Mus musculus]
          Length = 250

 Score = 37.5 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 58/199 (29%), Gaps = 31/199 (15%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-----------TGGTCAF-- 100
            LD  L   G   G + EI G   SGKT + L   A                GG  A   
Sbjct: 9   SLDKLL-DAGLYTGEVTEIVGGPGSGKTQVCLCVAANVAHSLQQNVLYVDSNGGMTASRL 67

Query: 101 --------VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
                    D E    ++   ++        +       +          SGAV ++++D
Sbjct: 68  LQLLQARTQDEEKQASALQRIQVVRSFDIFRMLDMLQDLRGTIAQQEATSSGAVKVVIVD 127

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           SV A      +   +          LM Q  R+L          +V  N +        G
Sbjct: 128 SVTA------VAAPLLGGQQREGLALMMQLARELKILARDLGVAVVVTNHLTRDWD---G 178

Query: 213 SPETTTGGNALKFYSSVRL 231
                  G +  F  S R+
Sbjct: 179 RRFKPALGRSWSFVPSTRI 197


>gi|150015018|ref|YP_001307272.1| DNA repair protein RadA [Clostridium beijerinckii NCIMB 8052]
 gi|149901483|gb|ABR32316.1| DNA repair protein RadA [Clostridium beijerinckii NCIMB 8052]
          Length = 458

 Score = 37.5 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 97/284 (34%), Gaps = 18/284 (6%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           +    + + +G    D  +G GG  K  I  I     +GK+TL L       + G    +
Sbjct: 61  VSNKSDRIVTGINEFDRVMG-GGIVKDSISIITARPGAGKSTLLLEISDAVAQKGYKVIY 119

Query: 101 VDAEHA---LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV--IDSVA 155
              E +   + +   R L    +++ + Q  + +  L+  + +     +   +      +
Sbjct: 120 ASGEESDSQIKNRADRILNKIHEDIWVLQETSLDNVLDAVEEIDPDIIIIDSIQTFTMES 179

Query: 156 ALTPRAEIEGDM---GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           +L  RA           +L  M           +   +++S  +        +   V+  
Sbjct: 180 SLPARAGSPTQTMECANALLQMAKNDRRPRAVIIVGQMTKSDELAGLRALEHLVDTVLII 239

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
             ++      L           R G I++     G +  + +         K+ E +I+ 
Sbjct: 240 EDDSDEELRVLVSS------KNRFGGIENGFFQMGERGIISIDNPSEFFMTKREEGEIVS 293

Query: 273 GEGIS--FFGELIDLGVKASIVDKSGAWF-SFKGQRLGQGRENS 313
           G  ++    G    +    S+V KS   + +  G+ LG+ + N+
Sbjct: 294 GSALTVIKEGTRAIITEIESLVSKSFTPYPTRIGETLGKDKLNT 337


>gi|171915929|ref|ZP_02931399.1| excinuclease ABC family protein [Verrucomicrobium spinosum DSM
           4136]
          Length = 1871

 Score = 37.5 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 3/97 (3%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P G++  I GP  SGK++LA  TI      G               + R    ++  + 
Sbjct: 43  LPLGKLNVITGPSGSGKSSLAFDTIY---AEGQRRYVETFSPYTRQFFERMDKPNVDAIH 99

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
              P    + +        +      + D +  L PR
Sbjct: 100 GIPPAIAIEQVNNIRSTRSTVGTITEINDYLKMLFPR 136


>gi|262318145|dbj|BAI48471.1| hypothetical protein [Proteus mirabilis]
          Length = 746

 Score = 37.5 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 300 SFKGQRLGQGRENSKIFLREN---IEIAENIESLLRQ 333
           S   + + QG EN K  L EN    + AE ++SL+R+
Sbjct: 118 SDDDEVVMQGLENVKKILAENYVRPDEAEKVKSLIRE 154


>gi|91773752|ref|YP_566444.1| circadian clock protein KaiC [Methanococcoides burtonii DSM 6242]
 gi|91712767|gb|ABE52694.1| Circadian clock protein kinase KaiC [Methanococcoides burtonii DSM
           6242]
          Length = 454

 Score = 37.5 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           SS    LD  L  GGFPK   + I GP  SGKTTLA+ +I  + +    C +V
Sbjct: 5   SSEIDALDTIL-KGGFPKPSAILIAGPAGSGKTTLAMQSIFSASEKKEVCMYV 56



 Score = 36.0 bits (81), Expect = 9.4,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI---AQSQKTGGTCAFV 101
            + VS+G  GLDI  G  G  +G    I G   +GKTT+    I   A++++ G   +F+
Sbjct: 233 TDRVSTGIEGLDIMTGN-GVIRGTSTLISGCSGAGKTTIGTQFIAEGAKAEEPGMIVSFI 291

Query: 102 DAE 104
           ++E
Sbjct: 292 ESE 294


>gi|222054843|ref|YP_002537205.1| replicative DNA helicase [Geobacter sp. FRC-32]
 gi|221564132|gb|ACM20104.1| replicative DNA helicase [Geobacter sp. FRC-32]
          Length = 457

 Score = 37.5 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           K  I  L +     E +  V +G + LD      GF +G ++ I G  S GKT  AL+  
Sbjct: 167 KDTIKNLEALYEKKEHVTGVPTGFVDLDGM--TAGFQRGDLIIIAGRPSMGKTAFALNIA 224

Query: 89  AQSQKTG 95
             +   G
Sbjct: 225 QHAAIHG 231


>gi|20095136|gb|AAM08002.1| putative ATP-dependent Lon protease [Providencia rettgeri]
          Length = 746

 Score = 37.5 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 300 SFKGQRLGQGRENSKIFLREN---IEIAENIESLLRQ 333
           S   + + QG EN K  L EN    + AE ++SL+R+
Sbjct: 118 SDDDEVVMQGLENVKKILAENYVRPDEAEKVKSLIRE 154


>gi|327493533|gb|AEA86392.1| gp41 DNA primase-helicase subunit [Campylobacter phage NCTC12673]
          Length = 413

 Score = 37.5 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 34/102 (33%), Gaps = 5/102 (4%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +S+G   LD  L  GG+    +  I      GK+    H  A +   G  C ++  E   
Sbjct: 161 ISTGVEVLDEVLA-GGYMPSTLNFICSVTHGGKSMFLSHFCANAMLKGYNCLYITLEMPS 219

Query: 108 DSIYAR----KLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145
             I+ R       +D+  L       G + L      V    
Sbjct: 220 IKIWDRIESNIFNIDISELRNYNVSEGYEKLPNLGRCVVKEY 261


>gi|307595782|ref|YP_003902099.1| putative circadian clock protein KaiC [Vulcanisaeta distributa DSM
           14429]
 gi|307550983|gb|ADN51048.1| putative circadian clock protein, KaiC [Vulcanisaeta distributa DSM
           14429]
          Length = 291

 Score = 37.5 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 2/82 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           +   +  +S G   LD AL +GG P+G  + + G    GK+ L +     +         
Sbjct: 1   MSSAVRRISLGINWLDYAL-LGGVPRGNWLLVTGEPGVGKSILTIQAAGANVDAMPVVYV 59

Query: 101 VDAEHALDSIYA-RKLGVDLKN 121
                  D +   ++  +DL +
Sbjct: 60  STETRFFDVVRQAKQFNIDLSD 81


>gi|293602766|ref|ZP_06685206.1| glutamine ABC superfamily ATP binding cassette transporter, ABC
           protein [Achromobacter piechaudii ATCC 43553]
 gi|292818782|gb|EFF77823.1| glutamine ABC superfamily ATP binding cassette transporter, ABC
           protein [Achromobacter piechaudii ATCC 43553]
          Length = 245

 Score = 37.5 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 33/100 (33%), Gaps = 3/100 (3%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
              G ++ I G   SGK+TL        Q  GG     DA+   D +  R L + +  + 
Sbjct: 26  VEPGEVIAIIGKSGSGKSTLLRCVNGLEQIDGGAIMVADAQLGDDELRLRALRLKVGMIF 85

Query: 124 IS---QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160
                 P        +   +V     +    D   A+  R
Sbjct: 86  QQFNLFPHLTVGRNVMLSPMVAKRMPEAEAADMARAMLTR 125


>gi|49658850|emb|CAF28476.1| putative DNA binding protein with DNA-dependent ATPase activity
           [Yersinia pseudotuberculosis]
          Length = 453

 Score = 37.5 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 66/165 (40%), Gaps = 12/165 (7%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
             ++ ++I +KS+  E A+S I+ +  +  I QL  +     GI    +G + LD     
Sbjct: 144 AEKRIIDIAEKSEP-EKAVSLIEGM--ERLITQLELRNQSGNGITGTPTGFVELDA--ST 198

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQ--SQKTGGTCAFVDAEHALDSIYARKLGV-- 117
            G     ++ + G  S GKT LA+  +      + G        E   + +  R +    
Sbjct: 199 CGLQNSDLILLAGRPSMGKTALAMSMVVGALQGREGSVVQVYSLEQPTEQLLMRMISSLG 258

Query: 118 --DLKNLLISQPDTGE-QALEITDMLVRSGAVDIIVIDSVAALTP 159
             +L+ L     D  +   +     ++     D ++ID   +LTP
Sbjct: 259 RIELQRLKSGLLDDEDWARISHASSIMVGEWRDRLIIDDTGSLTP 303


>gi|37525016|ref|NP_928360.1| hypothetical protein plu1031 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784442|emb|CAE13326.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 459

 Score = 37.5 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 7/111 (6%)

Query: 9   IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68
            + + KA+   +S  +   G G +++   Q +   GI    +G   LD      G   G 
Sbjct: 152 TLSEQKAVRQDISLKE---GLGLLIEKLEQANGGNGITGTPTGFRELDTK--TCGLQPGD 206

Query: 69  IVEIYGPESSGKTTLALHTIAQ--SQKTGGTCAFVDAEHALDSIYARKLGV 117
           ++ + G  S GKT LAL                    E  +D +  R + +
Sbjct: 207 LILLAGRPSMGKTALALAFCLSALESAPDAVAQIFSLEMPMDQLLMRMVSM 257


>gi|153948863|ref|YP_001402701.1| replicative DNA helicase [Yersinia pseudotuberculosis IP 31758]
 gi|152960358|gb|ABS47819.1| replicative DNA helicase [Yersinia pseudotuberculosis IP 31758]
          Length = 453

 Score = 37.5 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 66/165 (40%), Gaps = 12/165 (7%)

Query: 2   DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
             ++ ++I +KS+  E A+S I+ +  +  I QL  +     GI    +G + LD     
Sbjct: 144 AEKRIIDIAEKSEP-EKAVSLIEGM--ERLITQLELRNQSGNGITGTPTGFVELDA--ST 198

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQ--SQKTGGTCAFVDAEHALDSIYARKLGV-- 117
            G     ++ + G  S GKT LA+  +      + G        E   + +  R +    
Sbjct: 199 CGLQNSDLILLAGRPSMGKTALAMSMVVGALQGREGSVVQVYSLEQPTEQLLMRMISSLG 258

Query: 118 --DLKNLLISQPDTGE-QALEITDMLVRSGAVDIIVIDSVAALTP 159
             +L+ L     D  +   +     ++     D ++ID   +LTP
Sbjct: 259 RIELQRLKSGLLDDEDWARISHASSIMVGEWRDRLIIDDTGSLTP 303


>gi|58697360|ref|ZP_00372696.1| DNA repair protein RadA [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58536251|gb|EAL59786.1| DNA repair protein RadA [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 157

 Score = 37.5 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 8/111 (7%)

Query: 17  EAALSQIQRVYGKGAI-----MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71
           +  + +I    GK +I     ++  S   I      + +G   LD   G GG  +G  + 
Sbjct: 31  DTVVEEIAVKTGKRSISAPILIKTLSGSEIITPSRFL-TGIEELDRVFG-GGIVQGASIL 88

Query: 72  IYGPESSGKTTLALHTIAQ-SQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121
           I G    GK+TL L   A   Q +   C +V  E +L+ +  R   + +  
Sbjct: 89  IGGEPGIGKSTLLLRIAANVVQLSSFECLYVSGEESLEQVSLRAKRLKINE 139


>gi|163856923|ref|YP_001631221.1| hypothetical protein Bpet2611 [Bordetella petrii DSM 12804]
 gi|163260651|emb|CAP42953.1| conserved hypothetical protein [Bordetella petrii]
          Length = 267

 Score = 37.5 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 2/104 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGP-ESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           V +G   L   L  GG+P G +VE+  P    G+  L L        +    A V   H 
Sbjct: 57  VPTGHAALSALLPGGGWPPGALVELLAPHPGIGEIRL-LQPALAQLDSRHAIALVQPPHV 115

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
                 +   +  + LL   P+    AL   + +++ G+   ++
Sbjct: 116 PHLACWQSWRLAPRQLLWVAPERPADALWAAEQILKHGSCGALL 159


>gi|2920582|gb|AAC39719.1| RAD51D [Homo sapiens]
          Length = 289

 Score = 37.5 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 63/231 (27%), Gaps = 23/231 (9%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGTCAFVDAEHALDSIYAR 113
           LD  L   G   G + EI G   SGKT + L   A           +VD+   L +    
Sbjct: 50  LDKLL-DAGLYTGEVTEIVGGPGSGKTQVCLCMAANVAHGLQQNVLYVDSNGGLTASRLL 108

Query: 114 KL--------------GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           +L                 ++ +           L+     V            V  +  
Sbjct: 109 QLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDS 168

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
              +   +          LM Q  R+L +        +V  N +                
Sbjct: 169 VTAVVSPLLGGQQREGLALMMQLARELKTLARDLGMAVVVTNHITRDRDSGRL---KPAL 225

Query: 220 GNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           G +  F  S R+ +  +    +    +G +    + K+       Q   DI
Sbjct: 226 GRSWSFVPSTRILLDTI----EGAGASGGRRMACLAKSSRQPTGFQEMVDI 272


>gi|9886990|gb|AAG01689.1|AF222604_1 KaiC [Geitlerinema sp. PCC 7105]
          Length = 198

 Score = 37.5 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQ----SQKTGGTCAFVDAEHALDSIYARKLGV 117
           GG P+GR   + G   +GKT  A+  I        + G    F ++   L    A+  G 
Sbjct: 3   GGLPRGRTTLVSGTSGTGKTLFAIQFIYNGITYFNEPGVFVTFEESPTDLIKN-AQSFGW 61

Query: 118 DLKNLLIS 125
           DL+ L+  
Sbjct: 62  DLQGLVDE 69


>gi|54020645|ref|YP_116172.1| replicative DNA helicase [Mycoplasma hyopneumoniae 232]
 gi|53987818|gb|AAV28019.1| replicative DNA helicase [Mycoplasma hyopneumoniae 232]
          Length = 463

 Score = 37.5 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 35  LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
           L    +    I+ +S+G   LD+     GF KG +  +    S GKT  AL+      + 
Sbjct: 169 LTELRTSQNLIKGISTGYENLDLL--TSGFQKGDLTILAARPSVGKTAFALNLAWNICEN 226

Query: 95  GGTCAFVDAE 104
           G +  F   E
Sbjct: 227 GKSVLFFALE 236


>gi|33864258|ref|NP_895818.1| DNA repair protein RadA [Prochlorococcus marinus str. MIT 9313]
 gi|33641038|emb|CAE22167.1| putative DNA repair protein RadA [Prochlorococcus marinus str. MIT
           9313]
          Length = 464

 Score = 37.5 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 50/253 (19%), Positives = 92/253 (36%), Gaps = 30/253 (11%)

Query: 33  MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
           M + S G   + +  ++SG   LD  LG GG   G +V + G    GK+TL L +     
Sbjct: 61  MAMASLGD--QPVRRLASGYEELDRVLG-GGLVPGSMVLVGGDPGIGKSTLLLQSATAMA 117

Query: 93  KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
               +  +V AE +   +  R L   L+ +        E  LE+    + +    + +ID
Sbjct: 118 LQ-HSVLYVSAEESAQQVKLRWL--RLEGVTSDLQLLAETDLELVLEELEALRPAVAIID 174

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212
           S+ AL        D   S        + +    L     R +  LV +  +  +  +   
Sbjct: 175 SIQALH-------DGSLSSAPGSVAQVRECAAALQRLAKRQETALVLVGHVTKEGML--- 224

Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272
                 G   L+      L          +     +   ++ VKN+  +  +   F++  
Sbjct: 225 -----AGPKVLEHLVDAVLTF--------EGDRFASHRLLRAVKNRFGATHELGVFEMQ- 270

Query: 273 GEGISFFGELIDL 285
           G+G++  G   +L
Sbjct: 271 GKGLAEVGNPSEL 283


>gi|288940862|ref|YP_003443102.1| DNA repair protein RadA [Allochromatium vinosum DSM 180]
 gi|288896234|gb|ADC62070.1| DNA repair protein RadA [Allochromatium vinosum DSM 180]
          Length = 457

 Score = 37.1 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 50/144 (34%), Gaps = 6/144 (4%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E  + V SG   LD  LG GG   G +V I G    GK+TL L   A             
Sbjct: 71  EERQRVQSGIGELDRVLG-GGLVAGSVVLIGGDPGIGKSTLLLQACAALAAEQPVLYVSG 129

Query: 103 AEHALDS-IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
            E      + AR+LG+    + +      EQ L             ++V+DS+  L    
Sbjct: 130 EESPQQIGLRARRLGLSGGGIRLLAETCVEQILA----HAEQERPRVMVVDSIQTLYTET 185

Query: 162 EIEGDMGESLPGMQARLMSQALRK 185
                   S     A  + +  ++
Sbjct: 186 LQSAPGSVSQVRESAAQLVRFAKQ 209


>gi|160871890|ref|ZP_02062022.1| DNA repair protein RadA [Rickettsiella grylli]
 gi|159120689|gb|EDP46027.1| DNA repair protein RadA [Rickettsiella grylli]
          Length = 462

 Score = 37.1 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 58/150 (38%), Gaps = 8/150 (5%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           +      IE  SS    LD  LG GG   G ++ + G    GK+TL L ++ Q  +    
Sbjct: 62  KSIQLTQIERFSSTITELDRVLG-GGIVPGSVILMGGDPGIGKSTLLLQSLCQLSEH-HA 119

Query: 98  CAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155
             ++  E +L  +   A++LG+  K + +      E  L      +      ++VIDS+ 
Sbjct: 120 VLYITGEESLQQVALRAQRLGLPYKKIRLLAETQIENILR----HISEEKPHVLVIDSIQ 175

Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRK 185
            +                  A  +++  ++
Sbjct: 176 TMHTDLLQSAPGAVGQVRESALQLTRLAKQ 205


>gi|134095343|ref|YP_001100418.1| replicative DNA helicase [Herminiimonas arsenicoxydans]
 gi|133739246|emb|CAL62295.1| Replicative DNA helicase [Herminiimonas arsenicoxydans]
          Length = 461

 Score = 37.1 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 65/233 (27%), Gaps = 39/233 (16%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
                  I  V +G   LD      G   G ++ + G  S GKT  +++         G 
Sbjct: 186 NRDSTSDITGVPTGFADLDRM--TSGLQPGDLIIVAGRPSMGKTAFSINIGETVAIESGL 243

Query: 98  -CAFVDAEHALDSIYARKLGV--DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154
             A    E     +  R LG    L    +      ++        ++      + ID  
Sbjct: 244 PVAVFSMEMGGTQLAMRMLGSVGRLDQHRLRTGKLADEDWPRLTHAIQKMNDAQLYIDET 303

Query: 155 AALTPRAEI---------EGDMG------------ESLPGMQARLMSQALRKLTSSISRS 193
            AL                G +G             S    +A  +S+  R L       
Sbjct: 304 PALNSIELRARSRRLSRQCGKLGLIIIDYLQLMSANSSGENRATEISEISRNLKGLAKEL 363

Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
            C ++ ++Q+   +          +             D+R  G+I+    + 
Sbjct: 364 NCPVIALSQLNRSLEQRPNKRPVMS-------------DLRESGAIEQDADVI 403


>gi|217272816|ref|NP_001136043.1| DNA repair protein RAD51 homolog 4 isoform 6 [Homo sapiens]
 gi|119600590|gb|EAW80184.1| hCG1989222, isoform CRA_e [Homo sapiens]
 gi|194382408|dbj|BAG58959.1| unnamed protein product [Homo sapiens]
          Length = 348

 Score = 37.1 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 63/231 (27%), Gaps = 23/231 (9%)

Query: 55  LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGTCAFVDAEHALDSIYAR 113
           LD  L   G   G + EI G   SGKT + L   A           +VD+   L +    
Sbjct: 109 LDKLL-DAGLYTGEVTEIVGGPGSGKTQVCLCMAANVAHGLQQNVLYVDSNGGLTASRLL 167

Query: 114 KL--------------GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           +L                 ++ +           L+     V            V  +  
Sbjct: 168 QLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDS 227

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219
              +   +          LM Q  R+L +        +V  N +                
Sbjct: 228 VTAVVSPLLGGQQREGLALMMQLARELKTLARDLGMAVVVTNHITRDRDSGRL---KPAL 284

Query: 220 GNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
           G +  F  S R+ +  +    +    +G +    + K+       Q   DI
Sbjct: 285 GRSWSFVPSTRILLDTI----EGAGASGGRRMACLAKSSRQPTGFQEMVDI 331


>gi|156089661|ref|XP_001612237.1| ABC transporter family protein [Babesia bovis]
 gi|154799491|gb|EDO08669.1| ABC transporter family protein [Babesia bovis]
          Length = 655

 Score = 37.1 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 7/124 (5%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF--VDAEHALDSIYARKLGVDLKN 121
            PKG+ + I GP  SGKTTL+L        T G       D          + +GV  +N
Sbjct: 413 LPKGKSMAIVGPTGSGKTTLSLLLCRLYDPTSGKILINGTDIADVTQESLRKNIGVVSQN 472

Query: 122 LLISQPDTGEQ----ALEITDMLVRSGAVDIIVIDSVAALTPRAE-IEGDMGESLPGMQA 176
            ++      E      L+ TD  +         +D V AL  + + + G+ G  L G + 
Sbjct: 473 TMLFHASLRENLKYAKLDATDYEIYEALRRASFLDRVMALPEKLDTVVGERGMRLSGGEK 532

Query: 177 RLMS 180
           + +S
Sbjct: 533 QRVS 536


>gi|325289345|ref|YP_004265526.1| ABC transporter related protein [Syntrophobotulus glycolicus DSM
           8271]
 gi|324964746|gb|ADY55525.1| ABC transporter related protein [Syntrophobotulus glycolicus DSM
           8271]
          Length = 495

 Score = 37.1 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 72/239 (30%), Gaps = 38/239 (15%)

Query: 49  SSG-SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
            +G S  LDI       PKG ++ + G   +GK+T +       +   G C   +  ++ 
Sbjct: 272 PTGRSPALDIPQSS--LPKGGVIAVLGHNGAGKSTFSKCLCGLVKHQKGVCVCGEVPYSR 329

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167
             +  +   V          ++ E+ L +                        AE+E  M
Sbjct: 330 RRMLKKSYMVMQDVNHQLFCESVEEELRLGMSGEDQ-----------------AELERVM 372

Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227
                   A  ++    +   S+S  +   V I    +         E T+G        
Sbjct: 373 -------SALELTSFRERHPLSLSGGQKQRVAIASALLAGKEFLVFDEPTSG-------- 417

Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286
              LD R +       +  G +  V +V +      +   + +   +G       +D  
Sbjct: 418 ---LDFRHMEQTAGLLASLGGKQTVFIVTHDPELIVRCCNYVLCLEQGTIKEQYPLDEA 473


>gi|239817501|ref|YP_002946411.1| hypothetical protein Vapar_4538 [Variovorax paradoxus S110]
 gi|239804078|gb|ACS21145.1| conserved hypothetical protein [Variovorax paradoxus S110]
          Length = 280

 Score = 37.1 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 1/108 (0%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEI-YGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
             VVS+G   LD  L  GG+P   + E+     S  +  L    +      G     +  
Sbjct: 52  TSVVSTGFERLDAELPGGGWPCRSLTEVLQVQPSVLEWRLLAPAMRTLVAQGRQIVIIGP 111

Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
             A      R LG+D ++L+    D   + L  T+ L+++ A  ++V 
Sbjct: 112 PKAPHLPGLRHLGLDERHLVWIAADKPVERLWATEQLIKANAAGMLVS 159


>gi|20091899|ref|NP_617974.1| flagellar accessory protein FlaH [Methanosarcina acetivorans C2A]
 gi|19917095|gb|AAM06454.1| flagella accessory protein H [Methanosarcina acetivorans C2A]
          Length = 248

 Score = 37.1 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 18/134 (13%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E +SSG+L +D  L  GG P G +  + G   SGK+      +  +         +  E
Sbjct: 18  LEFISSGNLEIDRKL-EGGVPVGSLCLLEGGNDSGKSIFLQQIMWGALNQDKRVLALATE 76

Query: 105 HALDSIYARKLGVDLK-----------------NLLISQPDTGEQALEITDMLVRSGAVD 147
                +  +   +                      +   P   E  L++    ++    +
Sbjct: 77  KTSKELLNQMESLKHGISDYFIIGRAKIFEINAGYVEENPQLSESLLQVLLECIKRCKEE 136

Query: 148 IIVIDSVAALTPRA 161
           +I+IDS+      A
Sbjct: 137 LILIDSLTIFAVNA 150


>gi|78045162|ref|YP_359735.1| hypothetical protein CHY_0885 [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77997277|gb|ABB16176.1| conserved domain protein [Carboxydothermus hydrogenoformans Z-2901]
          Length = 296

 Score = 37.1 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 1/73 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           +E + +G    D  LG GG P   I  I G   SGKT L  + +  + + G    +    
Sbjct: 1   MERLVTGIENFDEVLG-GGIPLYSINIIAGNPGSGKTILVQNILFNAARRGLKSLYFTTV 59

Query: 105 HALDSIYARKLGV 117
                   R L  
Sbjct: 60  SESQFKMVRNLAD 72



 Score = 36.7 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 51  GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
           G  GLD  LG GG  +G    + G   +GKT  +L    ++ + G
Sbjct: 247 GIEGLDNLLG-GGIYRGSSTLLAGATGTGKTLFSLKFALEAAQRG 290


>gi|218885575|ref|YP_002434896.1| DNA repair protein RadA [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756529|gb|ACL07428.1| DNA repair protein RadA [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 492

 Score = 37.1 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 50/120 (41%), Gaps = 7/120 (5%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           E   SG   LD  LG G  P G  + + G    GK+TL L         G    ++  E 
Sbjct: 70  EPFGSGLDALDRVLGKGLVP-GAAILVGGEPGIGKSTLLLQVAGAVAAAGRGVLYLSGEE 128

Query: 106 ALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP-RAE 162
           +L  + AR  +LGV    L+       +  L     L    A  ++++DSV  ++  RAE
Sbjct: 129 SLPQLKARAARLGVLHDELMAVATTRLDDVL---PHLEGPEAPALLIVDSVQTVSSDRAE 185


>gi|170697437|ref|ZP_02888528.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10]
 gi|170137616|gb|EDT05853.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10]
          Length = 238

 Score = 37.1 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 3/105 (2%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPE-SSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           V +G   L   L  GG+P G ++E+  P+   G+  L    +A+    G     +   HA
Sbjct: 29  VDTGHPELTAELPGGGWPAGALIELLAPQLGIGELRLLAPVLAR--AAGKPVMLIQPPHA 86

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           L  +     G+D    +         AL   +  +R+G    +++
Sbjct: 87  LQPLALTYWGIDPSGFVTLPAPRTADALWAAEQALRAGTCAAVLL 131


>gi|172064768|ref|YP_001812418.1| hypothetical protein BamMC406_6767 [Burkholderia ambifaria MC40-6]
 gi|171998253|gb|ACB69169.1| conserved hypothetical protein [Burkholderia ambifaria MC40-6]
          Length = 238

 Score = 37.1 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 3/105 (2%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPE-SSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           V +G   L   L  GG+P G ++E+  P+   G+  L    +A+    G     +   HA
Sbjct: 29  VDTGHPELTAELPGGGWPAGALIELLAPQLGIGELRLLAPVLAR--AAGKPVMLIQPPHA 86

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           L  +     G+D    +         AL   +  +R+G    +++
Sbjct: 87  LQPLALTYWGIDPSGFVTLPAPRTADALWAAEQALRAGTCAAVLL 131


>gi|53803558|ref|YP_114589.1| hypothetical protein MCA2166 [Methylococcus capsulatus str. Bath]
 gi|53757319|gb|AAU91610.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath]
          Length = 207

 Score = 37.1 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 1/83 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGP-ESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
            V+ SG   LD  L  GG+P G + EI  P +  G+  L L  + +    G    +V   
Sbjct: 30  PVIPSGHAALDAVLPAGGWPAGALTEIITPAQGIGELRLLLPLMRRIAGDGRRLVWVAPP 89

Query: 105 HALDSIYARKLGVDLKNLLISQP 127
               +    + GV++  +L+   
Sbjct: 90  FEPYAPALVQAGVEIGRMLVVAV 112


>gi|294625890|ref|ZP_06704504.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294665465|ref|ZP_06730750.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292599800|gb|EFF43923.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292604764|gb|EFF48130.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 217

 Score = 37.1 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 4/121 (3%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE-SSGKTTLALHTIA 89
            + + G   +   G E  S+G + LD  L  GG+P+  + E+  P    G+  L L T+A
Sbjct: 28  TVWRAGQGTATVNGGE--STGHVALDALLPDGGWPRRALTELLLPAHGIGEIALLLPTLA 85

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           +   +      V       +   +  GV L++L + Q +   +AL   +  +RSGA   +
Sbjct: 86  RMTASSSRVVLVAPPFIPYAPAWQAGGVVLEHLEVVQAEPR-EALWAFEQCLRSGACAAV 144

Query: 150 V 150
           +
Sbjct: 145 L 145


>gi|219848894|ref|YP_002463327.1| replicative DNA helicase [Chloroflexus aggregans DSM 9485]
 gi|219543153|gb|ACL24891.1| replicative DNA helicase [Chloroflexus aggregans DSM 9485]
          Length = 450

 Score = 37.1 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 43/118 (36%), Gaps = 7/118 (5%)

Query: 37  SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-G 95
           S       +  V +G   LD     GG     ++ +    S GKT+LAL           
Sbjct: 177 SMQERRGEVIGVPTGYHDLDEL--TGGLQPSDLIILAARPSVGKTSLALSLAYNVAYQAN 234

Query: 96  GTCAFVDAEHALDSIYARKL----GVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           GT A    E + + +  R L    G+D++ L        E +L I  + V S     I
Sbjct: 235 GTVAIFSLEMSREQLVQRMLAMHTGIDMQRLRTGNLRGEELSLAIEGLGVLSELPIYI 292


>gi|329905369|ref|ZP_08274108.1| KaiC [Oxalobacteraceae bacterium IMCC9480]
 gi|327547617|gb|EGF32412.1| KaiC [Oxalobacteraceae bacterium IMCC9480]
          Length = 482

 Score = 37.1 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 83/239 (34%), Gaps = 16/239 (6%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           ++   G++  G +++SSG   LD  LG GG   G    + GP  +GK+TL    +A   +
Sbjct: 230 RIEHTGTLNPGDQMMSSGIAELDQLLG-GGLESGTTTLLTGPTGTGKSTLGTQFLAHHAR 288

Query: 94  TGGTCAFVDAEHA-LDSIYARKLGVDLKNLLISQP--DTGEQALEITDMLVRSGAVDIIV 150
                 F   E A      +R +G  + +++ S          +E+      +   D + 
Sbjct: 289 RSRAVLFTFEEPASFIMARSRGIGAPIDDVVASGALKIVRINPIELYPDEFLAAIRDAVE 348

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           ID    +     I+   G      +       +  + + +SR+    + IN++       
Sbjct: 349 IDGCTMVM----IDSLRGYLFAMEEFGKPQAHIHNMVTYLSRNGVSTLLINEVEHITSTS 404

Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269
             + +       +   +   + +R          I G    +K          +Q++  
Sbjct: 405 LKATDL-----GVSHLADNIILLRYAEYAGQVIKIVG---CLKKRIGNFQPELRQMKVS 455



 Score = 37.1 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 3/80 (3%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA--EHA 106
           S+G  G D  L  GG   GR   I G   +GKT  +L  +    +    C ++       
Sbjct: 2   STGVPGCDEIL-DGGLVAGRCYLIGGSAGAGKTIFSLQWLRAGLQRHEKCLYITLCEPGP 60

Query: 107 LDSIYARKLGVDLKNLLISQ 126
                    G DL+ + I  
Sbjct: 61  EIIRNVSGFGWDLEQIAIVD 80


>gi|300311575|ref|YP_003775667.1| hypothetical protein Hsero_2260 [Herbaspirillum seropedicae SmR1]
 gi|300074360|gb|ADJ63759.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 287

 Score = 37.1 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 6/110 (5%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVE-IYGPESSGKTTLALHTIAQSQKTG-----GTCAFV 101
           VSSG   LD  L   G+P G ++E +   +  G+  L    +AQ Q+       G  A +
Sbjct: 71  VSSGFEALDAELPGRGWPTGVLIELLLPQDGVGELRLLRPLLAQPQRLRPGAPSGRIALL 130

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
            A HA+++     +GV    LL  Q DT   A    + ++R+ +   +++
Sbjct: 131 QAPHAINAPGWAAMGVPATRLLQLQADTPVDACWAAEQVLRADSCQALLM 180


>gi|294674313|ref|YP_003574929.1| DNA repair protein RadA [Prevotella ruminicola 23]
 gi|294471945|gb|ADE81334.1| DNA repair protein RadA [Prevotella ruminicola 23]
          Length = 466

 Score = 37.1 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 77/218 (35%), Gaps = 25/218 (11%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G +++L    S  +    +      L+  LG GG   G IV + G    GK+TL+L T+ 
Sbjct: 67  GKVLRLRDISS--KDDPRIDMHDAELNRVLG-GGLVPGSIVLLGGEPGIGKSTLSLQTML 123

Query: 90  QSQKTGGTCAFVDAEHALDS--IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
              +      +V  E +     + A +LG + +N L+   ++    LE     ++    +
Sbjct: 124 NMPEK--KILYVSGEESAHQLKMRAERLGGENENFLLLTENS----LETIFDHIKEVQPE 177

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM-- 205
           +IVIDS+  ++           +     A         L      S   ++ I  +    
Sbjct: 178 LIVIDSIQTISTEDVESSAGSIAQVRECASA-------LLRFAKTSGVPVILIGHITKEG 230

Query: 206 -----KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238
                KI            G+    Y  +R    R GS
Sbjct: 231 TLAGPKILEHIVDTVIQFEGDQHYMYRILRSIKNRFGS 268


>gi|255013385|ref|ZP_05285511.1| replicative DNA helicase [Bacteroides sp. 2_1_7]
          Length = 484

 Score = 37.1 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 2/73 (2%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +G  GLD     GG   G +  I      GKT  AL     + + G        E + 
Sbjct: 203 IHTGLEGLDRM--TGGMMPGTLNVIAARPRVGKTAFALFMALNAARNGHPVCLYSLEMSK 260

Query: 108 DSIYARKLGVDLK 120
           + +  R LG    
Sbjct: 261 EQLVFRLLGCIAD 273


>gi|153002957|ref|YP_001377282.1| replicative DNA helicase [Anaeromyxobacter sp. Fw109-5]
 gi|152026530|gb|ABS24298.1| replicative DNA helicase [Anaeromyxobacter sp. Fw109-5]
          Length = 474

 Score = 37.1 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 28/78 (35%), Gaps = 3/78 (3%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-GGTCAF 100
              I  V +G   LD      GF  G +  +    S GKT  AL+    +    G   AF
Sbjct: 198 LSPITGVPTGIQSLDK--NTLGFQPGTLTVLAARPSVGKTAFALNIATHAATRAGKKVAF 255

Query: 101 VDAEHALDSIYARKLGVD 118
              E   D +  R L  +
Sbjct: 256 FSLEMPSDQLALRMLASE 273


>gi|86143039|ref|ZP_01061461.1| hypothetical protein MED217_10352 [Leeuwenhoekiella blandensis
           MED217]
 gi|85830484|gb|EAQ48943.1| hypothetical protein MED217_10352 [Leeuwenhoekiella blandensis
           MED217]
          Length = 430

 Score = 37.1 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK--SGAWFSFKGQ--RLGQGRENSKIF 316
           +P      D     GI     L  L   +   ++   GA++S      RL Q R+++  +
Sbjct: 19  TPKSFYPIDGYERTGIDRLAYLQKLVQDSVAYNRIPPGAYYSIDDIKLRLTQKRDSAITY 78

Query: 317 LRENIEIAENI 327
           ++++ E+ + I
Sbjct: 79  MQDDPELQKKI 89


>gi|262381511|ref|ZP_06074649.1| replicative DNA helicase [Bacteroides sp. 2_1_33B]
 gi|262296688|gb|EEY84618.1| replicative DNA helicase [Bacteroides sp. 2_1_33B]
          Length = 484

 Score = 37.1 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 2/73 (2%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +G  GLD     GG   G +  I      GKT  AL     + + G        E + 
Sbjct: 203 IHTGLEGLDRM--TGGMMPGTLNVIAARPRVGKTAFALFMALNAARNGHPVCLYSLEMSK 260

Query: 108 DSIYARKLGVDLK 120
           + +  R LG    
Sbjct: 261 EQLVFRLLGCIAD 273


>gi|298673994|ref|YP_003725744.1| putative circadian clock protein KaiC [Methanohalobium evestigatum
           Z-7303]
 gi|298286982|gb|ADI72948.1| putative circadian clock protein, KaiC [Methanohalobium evestigatum
           Z-7303]
          Length = 249

 Score = 37.1 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           +  + +G  G D  L  GG    R+  + GP  SGKTT  +  +      G    ++
Sbjct: 2   VTRIQTGISGFDE-LVQGGLLSERVYLVSGPPGSGKTTFGIQFLTHGAANGEIGLYI 57


>gi|161504551|ref|YP_001571663.1| hypothetical protein SARI_02664 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865898|gb|ABX22521.1| hypothetical protein SARI_02664 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 478

 Score = 37.1 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 42/118 (35%), Gaps = 19/118 (16%)

Query: 4   RKEMNIVDKSKALEAALSQIQ-----------RVYGKGAIMQ-----LGSQGSIFEGIEV 47
           R  M    K +A++A  +Q+            R +G+  +M+     L  +         
Sbjct: 133 RNGMTATQKYEAIQAIFTQLTDHAKTGSRRGLRSFGE--VMEDWVSDLEKRFDPSGKQRG 190

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL-ALHTIAQSQKTGGTCAFVDAE 104
           +S+G   LD  L   G  KG +  I      GKTTL +   I  +     T      E
Sbjct: 191 MSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKKTALMFSLE 248


>gi|150007928|ref|YP_001302671.1| replicative DNA helicase [Parabacteroides distasonis ATCC 8503]
 gi|149936352|gb|ABR43049.1| replicative DNA helicase [Parabacteroides distasonis ATCC 8503]
          Length = 484

 Score = 37.1 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 2/73 (2%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           + +G  GLD     GG   G +  I      GKT  AL     + + G        E + 
Sbjct: 203 IHTGLEGLDRM--TGGMMPGTLNVIAARPRVGKTAFALFMALNAARNGHPVCLYSLEMSK 260

Query: 108 DSIYARKLGVDLK 120
           + +  R LG    
Sbjct: 261 EQLVFRLLGCIAD 273


>gi|32470036|ref|NP_862978.1| putative ATP-dependent Lon protease [Escherichia coli]
 gi|218561663|ref|YP_002394575.1| putative ATP-dependent Lon protease [Escherichia fergusonii ATCC
           35469]
 gi|28629293|gb|AAO49573.1| putative ATP-dependent Lon protease [Escherichia coli]
 gi|218350177|emb|CAQ86939.1| putative ATP-dependent Lon protease [Escherichia fergusonii]
          Length = 691

 Score = 37.1 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 300 SFKGQRLGQGRENSKIFLREN---IEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356
           S   + + QG +N K  L EN    + AE ++SL+R+  G+          +N K D  +
Sbjct: 63  SDDDEVVMQGLDNVKKILAENYVRPDEAEKVKSLIRER-GMFKIIDKVSVKLNQKKDVYE 121

Query: 357 DDTDNV 362
               N+
Sbjct: 122 AALSNL 127


>gi|15231261|ref|NP_187958.1| OVA5 (OVULE ABORTION 5); ATP binding / aminoacyl-tRNA ligase/
           lysine-tRNA ligase/ nucleic acid binding / nucleotide
           binding [Arabidopsis thaliana]
 gi|9280301|dbj|BAB01756.1| lysyl-tRNA synthetase [Arabidopsis thaliana]
 gi|26983796|gb|AAN86150.1| putative lysyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 602

 Score = 37.1 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 309 GRENSKIF--LRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359
           GRE +  F  L + ++    +E  +RQ+    A+++ + P  N K D D D++
Sbjct: 497 GREMANAFSELTDPVDQRTRLEEQVRQHNAKRAEAVRESPEPNAKKDDDDDES 549


>gi|149180243|ref|ZP_01858748.1| replicative DNA helicase [Bacillus sp. SG-1]
 gi|148852435|gb|EDL66580.1| replicative DNA helicase [Bacillus sp. SG-1]
          Length = 409

 Score = 37.1 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           V SG   LD+    GGF  G ++   G  S GKT L L+    +   G T  F   E + 
Sbjct: 153 VPSGFQHLDVM--TGGFKPGELIIAAGRPSMGKTALVLNLAMNAALHGSTVDFFSLEMSE 210

Query: 108 DSIYARKLGV 117
             +Y R L  
Sbjct: 211 KQLYHRLLSR 220


>gi|21241951|ref|NP_641533.1| hypothetical protein XAC1197 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21107343|gb|AAM36069.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 202

 Score = 37.1 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 4/121 (3%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE-SSGKTTLALHTIA 89
            + + G   +   G E  S+G + LD  L  GG+P+  + E+  P    G+  L L T+A
Sbjct: 13  TVWRAGQGTATANGGE--STGHVALDALLPDGGWPRRALTELLLPAHGIGEIALLLPTLA 70

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           +   +      V       +   +  GV L++L + Q +   +AL   +  +RSGA   +
Sbjct: 71  RMTASSSRVVLVAPPFIPYAPAWQAGGVVLEHLEVVQAEPR-EALWAFEQCLRSGACAAV 129

Query: 150 V 150
           +
Sbjct: 130 L 130


>gi|78046780|ref|YP_362955.1| hypothetical protein XCV1224 [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78035210|emb|CAJ22855.1| conserved hypothetical protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 217

 Score = 37.1 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 4/121 (3%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE-SSGKTTLALHTIA 89
            + + G   +   G E  S+G + LD  L  GG+P+  + E+  P    G+  L L T+A
Sbjct: 28  TVWRAGQGTATANGGE--STGHVALDALLPDGGWPRRALTELLLPAHGIGEIALLLPTLA 85

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           +   +      V       +   +  GV L++L + Q +   +AL   +  +RSGA   +
Sbjct: 86  RMTASSSRVVLVAPPFIPYAPAWQAGGVVLEHLEVVQAEPR-EALWAFEQCLRSGACAAV 144

Query: 150 V 150
           +
Sbjct: 145 L 145


>gi|239833285|ref|ZP_04681613.1| polyamine ABC transporter, ATP-binding protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239821348|gb|EEQ92917.1| polyamine ABC transporter, ATP-binding protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 371

 Score = 37.1 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 39/119 (32%), Gaps = 2/119 (1%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
              G  V I GP  SGKTTL        Q T G     D +        R +G+  +   
Sbjct: 28  IRAGEFVSIIGPSGSGKTTLLTMVAGFEQPTNGRIIVGDVDITTLPPNRRNVGMVFQKYA 87

Query: 124 ISQPDTGEQALEITDMLVR--SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
           +    T  Q +     + R  S       +D +  L    +        L G Q + ++
Sbjct: 88  LFPHLTVRQNIAFPLKMRRLGSKKDIRSRVDEMLELIRLNDFADRYPNQLSGGQQQRVA 146


>gi|221135080|ref|ZP_03561383.1| putative ABC transporter ATP-binding protein [Glaciecola sp.
           HTCC2999]
          Length = 555

 Score = 37.1 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 41/114 (35%), Gaps = 3/114 (2%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG +     G+   S G   L   L     PKG IV I GP  +GK+TL      Q Q 
Sbjct: 318 RLGDKVIDVTGL-TKSYGDRLLIDDLSFS-IPKGAIVGIIGPNGAGKSTLFRMLTGQEQP 375

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
             G     D          R   ++  N +  +    +  + I +  + S A  
Sbjct: 376 DAGDIVLGDTVQIASVEQFRD-HMNEDNTVWKEISDEQDLIRIGNFEINSRAYC 428


>gi|70731060|ref|YP_260801.1| hypothetical protein PFL_3699 [Pseudomonas fluorescens Pf-5]
 gi|68345359|gb|AAY92965.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
          Length = 205

 Score = 37.1 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 2/102 (1%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEI-YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           +G   LD  L  GG+P+  + EI    +  G+  L   ++A+    G     V       
Sbjct: 31  TGHAALDAVLPTGGWPEAALTEILIAAQGLGELQLLWPSLARLSAAGERIVLVAPPFVPY 90

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
               +  GVD++ L I Q    + AL   +  +RSG+   ++
Sbjct: 91  PQAWQNAGVDVRQLSIIQAGERD-ALWAAEQCLRSGSCGAVL 131


>gi|238794809|ref|ZP_04638411.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia
           intermedia ATCC 29909]
 gi|238725889|gb|EEQ17441.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia
           intermedia ATCC 29909]
          Length = 548

 Score = 37.1 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 3/113 (2%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG +    E +   S G   L   L     PKG IV I GP  +GK+TL      Q Q 
Sbjct: 311 RLGDKVLEVEHLSK-SYGDRLLIDDLTFA-LPKGAIVGIIGPNGAGKSTLFRMLSGQEQP 368

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
             GT +  D          R   +D    +  +   G+  ++I +  + S A 
Sbjct: 369 DSGTISLGDTVQLASVDQFRD-NMDNSKTVWEEVSGGQDIMKIGNFEIPSRAY 420


>gi|289661573|ref|ZP_06483154.1| hypothetical protein XcampvN_00335 [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 217

 Score = 37.1 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 4/121 (3%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE-SSGKTTLALHTIA 89
            + + G   +   G E  S+G   LD  L  GG+P+  + E+  P    G+  L L  +A
Sbjct: 28  TVWRAGQGTATANGGE--STGHAALDALLPDGGWPRRALTELLLPAHGIGEIALLLPMLA 85

Query: 90  QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
           +   +      V       +   +  GV L++L + Q +   +AL   +  +RSGA   +
Sbjct: 86  RMTASSSRVVLVAPPFIPYAPAWQAGGVVLEHLEVVQAEPR-EALWAFEQCLRSGACAAV 144

Query: 150 V 150
           +
Sbjct: 145 L 145


>gi|330981301|gb|EGH79404.1| hypothetical protein PSYAP_22447 [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 207

 Score = 37.1 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 11/137 (8%)

Query: 15  ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI-Y 73
           +L+A L   +R   KG       +      +    SG   LD AL  GG+P   + EI  
Sbjct: 7   SLDALLD--ERRVWKG-------RQQSAPQVSPQPSGHALLDAALPTGGWPAAALTEILI 57

Query: 74  GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133
               SG+  L   ++A+          V   +          GVDL+ L++ +    + A
Sbjct: 58  PANGSGELRLLWPSLARLSAIAERIVLVAPPYIPYPQAWLSAGVDLRQLVVIEASPRD-A 116

Query: 134 LEITDMLVRSGAVDIIV 150
           L   +  +RSG+   +V
Sbjct: 117 LWAAEQCLRSGSCGAVV 133


>gi|77459373|ref|YP_348880.1| hypothetical protein Pfl01_3151 [Pseudomonas fluorescens Pf0-1]
 gi|77383376|gb|ABA74889.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
          Length = 205

 Score = 37.1 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 4/103 (3%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEI--YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           +G   LD AL  GG+P+  + EI   GP   G+  L   T+A+    G     V      
Sbjct: 31  TGHAALDAALPSGGWPEAALSEILLAGP-GVGELQLVWPTLARLSAAGERIVLVAPPFVP 89

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
                   GVDL+ L + Q  +   AL   +  +RSG+   ++
Sbjct: 90  YPQAWANAGVDLRQLSVIQA-SERDALWAAEQCLRSGSCGAVL 131


>gi|317407659|gb|EFV87597.1| DNA repair protein radA [Achromobacter xylosoxidans C54]
          Length = 454

 Score = 36.7 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 56/164 (34%), Gaps = 13/164 (7%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
                 +G    D  LG GG   G +V I G    GK+TL L  +A   ++         
Sbjct: 69  ETPRTPTGLEEFDRVLG-GGLVAGAVVLIGGDPGIGKSTLLLQALASLSESTNVLYVTGE 127

Query: 104 EHALD-SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162
           E A   ++ AR+LG+   N+ +         LE     V      + VIDS+  L     
Sbjct: 128 ESAEQVALRARRLGLQTGNVNLLAEI----RLEAIQAAVSEQKPSVAVIDSIQTLYSGEL 183

Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
                  S     A        +LT    ++   +V I  +   
Sbjct: 184 TAAPGSVSQVRECAA-------QLTRLAKQTGIAIVMIGHVTKD 220


>gi|152963958|ref|YP_001355391.1| hypothetical protein Krad_4702 [Kineococcus radiotolerans SRS30216]
 gi|151363159|gb|ABS06160.1| hypothetical protein Krad_4702 [Kineococcus radiotolerans SRS30216]
          Length = 891

 Score = 36.7 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 9/119 (7%)

Query: 60  GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119
           G+G    GR+  + G   SGK+ LA   +A+    GG+  ++D E    ++ AR L +  
Sbjct: 489 GVGLLYAGRVHSLAGEPESGKSLLAQAEVARVLAAGGSAVYIDGEDTPGNVVARLLAMGA 548

Query: 120 -------KNLLISQPDTGEQALEITDMLVR--SGAVDIIVIDSVAALTPRAEIEGDMGE 169
                  +     +P+     L       +  +  VD++VID V      A      G+
Sbjct: 549 PAEVLTGERFRYVRPEVSPGVLSEAQAWQQLLAQPVDMVVIDGVTEFLGLAGASSKDGD 607


>gi|153949274|ref|YP_001401213.1| replicative DNA helicase [Yersinia pseudotuberculosis IP 31758]
 gi|152960769|gb|ABS48230.1| replicative DNA helicase [Yersinia pseudotuberculosis IP 31758]
          Length = 457

 Score = 36.7 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 77/269 (28%), Gaps = 59/269 (21%)

Query: 30  GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89
           G I  LG + +       + SG   LD     GGF    +V I G    GKT  AL  + 
Sbjct: 155 GYIDILGKRMNGEIDSINLQSGIAELDAI--TGGFNPQDLVVIAGRPGMGKTEFALKIVE 212

Query: 90  QSQKTGGTCAFVDAE-------------------------HALDSIYARKLGVDLKN--- 121
            + + GG       E                           L      ++   L+    
Sbjct: 213 GATQNGGGALVFSMEMASLQIVERSIAGAGNLPVSKLRAPKTLCDEDWERINTALQALNG 272

Query: 122 ----LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177
               ++ +   T +Q   I +   R      +V+     L  + +               
Sbjct: 273 RDIWIVDASELTIDQIWAIAETHKRRYPKLRMVMVDYLGLITKPK---------AERNDL 323

Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237
            +    R+L +   R    +  ++Q+  K+       E   G            D+R  G
Sbjct: 324 SLGIISRRLKTLAGRINTPIFALSQLSRKVD------ERPLGNRRPINS-----DLRDSG 372

Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           SI+           + + +  + +P    
Sbjct: 373 SIEQDADSI-----IMLYREAIYNPDSPA 396


>gi|325925610|ref|ZP_08186995.1| hypothetical protein XPE_0931 [Xanthomonas perforans 91-118]
 gi|325544010|gb|EGD15408.1| hypothetical protein XPE_0931 [Xanthomonas perforans 91-118]
          Length = 195

 Score = 36.7 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 2/103 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPE-SSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           S+G + LD  L  GG+P+  + E+  P    G+  L L T+A+   +      V      
Sbjct: 22  STGHVALDALLPDGGWPRRALTELLLPAHGIGEIALLLPTLARMTASSSRVVLVAPPFIP 81

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            +   +  GV L++L + Q +   +AL   +  +RSGA   ++
Sbjct: 82  YAPAWQAGGVVLEHLEVVQAEPR-EALWAFEQCLRSGACAAVL 123


>gi|303320159|ref|XP_003070079.1| hypothetical protein CPC735_032700 [Coccidioides posadasii C735
           delta SOWgp]
 gi|240109765|gb|EER27934.1| hypothetical protein CPC735_032700 [Coccidioides posadasii C735
           delta SOWgp]
 gi|320031918|gb|EFW13875.1| conserved hypothetical protein [Coccidioides posadasii str.
           Silveira]
          Length = 591

 Score = 36.7 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 68/192 (35%), Gaps = 29/192 (15%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-----KTGGT 97
             +  +S+    LD  L  GG   G + EI G   SGKT L LH +   Q          
Sbjct: 103 PSLSSISTLDPLLDDVLS-GGILTGYVTEIAGESGSGKTQLLLHLLLSVQLPPPYGLRKN 161

Query: 98  CAFVDAEHALDSIYARKL------------------GVDLKNLLISQPDTGEQALE-ITD 138
             ++  E  L +    +L                    ++ ++     +T +  L     
Sbjct: 162 ALYISTEADLATNRLSQLLDGHPLLISLPEDVQRPSLDNVLSITTVDLETQDHILNYHVP 221

Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198
             +    V ++VIDS+ A      +E  +      +      + L +L  +++ +  I V
Sbjct: 222 AAISRYNVGLVVIDSITANYR---VESSINNVCGLLDRAWELKRLGQLLRNLAVTHNIAV 278

Query: 199 FI-NQMRMKIGV 209
            + NQ+  ++  
Sbjct: 279 VVANQISDRLSH 290


>gi|21227041|ref|NP_632963.1| putative flagella related protein H [Methanosarcina mazei Go1]
 gi|20905363|gb|AAM30635.1| putative flagella related protein H [Methanosarcina mazei Go1]
          Length = 238

 Score = 36.7 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 40  SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99
              + ++ +SSG   LD  +G GG+  GR++ I G   +GKTT  +H + ++   G  C 
Sbjct: 2   DRVKTMKRISSGIPELDTRIG-GGYLAGRVLLITGDTGTGKTTFTIHFLHRACLDGKKCV 60

Query: 100 FVDAEH 105
            V  E 
Sbjct: 61  LVATEE 66


>gi|257051296|ref|YP_003129129.1| Cobyrinic acid ac-diamide synthase [Halorhabdus utahensis DSM
           12940]
 gi|256690059|gb|ACV10396.1| Cobyrinic acid ac-diamide synthase [Halorhabdus utahensis DSM
           12940]
          Length = 425

 Score = 36.7 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 40/125 (32%), Gaps = 5/125 (4%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
              + +  +  ++G   LD  LG GG P G +V +    +S    L     A +   G  
Sbjct: 210 DSKVPDATDRFTTGIDSLDAELG-GGIPNGSVVSVVAEPNSQSEQL---LYALTAARGTL 265

Query: 98  CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
              V+   +L         V     +I     G   L      V S      ++     L
Sbjct: 266 YLSVERSQSLVQEAVETAAVTPGEPVIRH-LDGPDVLSEAMEYVESLPDGANLVIDSMDL 324

Query: 158 TPRAE 162
             RA+
Sbjct: 325 FERAD 329


>gi|330399558|ref|YP_004030656.1| cell division inhibitor [Burkholderia rhizoxinica HKI 454]
 gi|312170295|emb|CBW77334.1| Cell division inhibitor [Burkholderia rhizoxinica HKI 454]
          Length = 308

 Score = 36.7 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 43/106 (40%), Gaps = 3/106 (2%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVE-IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
            + +G   L+  L  GG+P+G ++E +      G+  L    +   Q        ++  H
Sbjct: 100 RIDTGYTTLNAELPGGGWPQGALIELLISQPGIGELRLLAPALRTLQPRA--IVLINPPH 157

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
            +  +  R  G+D  +  + +      A    +  +R+G+   +++
Sbjct: 158 TVQPLALRYWGLDSIHWCVLRAPKTADACWAAEQALRTGSCGAVLL 203


>gi|157156830|ref|YP_001463314.1| DnaB family helicase [Escherichia coli E24377A]
 gi|209919441|ref|YP_002293525.1| hypothetical protein ECSE_2250 [Escherichia coli SE11]
 gi|157078860|gb|ABV18568.1| helicase, DnaB family [Escherichia coli E24377A]
 gi|209912700|dbj|BAG77774.1| hypothetical phage protein [Escherichia coli SE11]
          Length = 463

 Score = 36.7 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 73/259 (28%), Gaps = 41/259 (15%)

Query: 50  SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109
           +G   LD+AL  GG     +V + G    GKT   L  I      GG   F   E     
Sbjct: 175 TGVEDLDVAL--GGINMTDLVVVAGRPGMGKTEFTLKIIDGVTADGGGALFFSMEMGAQQ 232

Query: 110 I------------------YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           I                         D   L  +     ++ + I D    +      + 
Sbjct: 233 IVERTVAGAGNMSSSRLRNPKEMDDEDWSRLTAALAIMQDRDIWIVDATDLTIEQIRAIA 292

Query: 152 DSVAALTPR-----AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206
           ++     P       +  G + +         +    R + +   R    +  ++Q+  +
Sbjct: 293 ETHKRRYPHLKLIGVDYMGLIKKPKAERHDLAVGHISRNMKTMAMRLHTPVFALSQLSRQ 352

Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266
           +           G            D+R  GS++           + + ++ + +P    
Sbjct: 353 VDSR------PAGQRRPVMS-----DLRDSGSVEQDADSI-----LFLYRDDVYTPDSPA 396

Query: 267 EFDIMYGEGISFFGELIDL 285
           +       G +  G   ++
Sbjct: 397 KGIAEVIIGKNRSGGAGEI 415


>gi|293605787|ref|ZP_06688161.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292815836|gb|EFF74943.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 234

 Score = 36.7 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 2/104 (1%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVE-IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106
           + +G   L   L  GG+P G ++E +      G+  L L       +T    A V   H 
Sbjct: 25  LPTGHASLSAELPDGGWPLGSLIELLTPHPGVGEIRL-LRPALAQLETRRPIALVQPPHE 83

Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
                     +D + LL   P      L  T+ ++++G+   ++
Sbjct: 84  PHIASWMSWRLDPRQLLWVAPQKPVDTLWATEQILKNGSCGALI 127


>gi|289667314|ref|ZP_06488389.1| hypothetical protein XcampmN_02024 [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 219

 Score = 36.7 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 2/103 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPE-SSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           S+G   LD  L  GG+P+  + E+  P    G+  L L  +A+   +      V      
Sbjct: 46  STGHAALDALLPDGGWPRRALTELLLPAHGIGEIALLLPMLARMTASSSRVVLVAPPFIP 105

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            +   +  GV L++L + Q +   +AL   +  +RSGA   ++
Sbjct: 106 YAPAWQAGGVVLEHLEVVQAEPR-EALWAFEQCLRSGACAAVL 147


>gi|221632704|ref|YP_002521925.1| replicative DNA helicase [Thermomicrobium roseum DSM 5159]
 gi|221156678|gb|ACM05805.1| replicative DNA helicase [Thermomicrobium roseum DSM 5159]
          Length = 450

 Score = 36.7 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 9/115 (7%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF-----VD 102
           V +G   LD     GG  +  ++ +    S GKT+  L     +    G         + 
Sbjct: 189 VPTGFADLDKL--TGGLQRSDLIILAARPSVGKTSFQLSIAHHAAVKAGKVVAIFSLEMS 246

Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157
           AE  +  + A + G+D   L +   D  EQ  +         A   I ID    +
Sbjct: 247 AEQLVQRLLAMETGIDTHRLRLGYID--EQEWDAISRAFGRLAEARIFIDDTPGI 299


>gi|282600647|ref|ZP_05979308.2| conserved hypothetical protein [Subdoligranulum variabile DSM
           15176]
 gi|282571687|gb|EFB77222.1| conserved hypothetical protein [Subdoligranulum variabile DSM
           15176]
          Length = 325

 Score = 36.7 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 92/265 (34%), Gaps = 31/265 (11%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF-----VDAEHALDSIYARKLGVD 118
            P G+I  I G    GKTT  L  IA+     G  A+     +   + +       L   
Sbjct: 32  IPCGKITIIQGDPGEGKTTFILQLIARLTT--GRPAWDGMSPMTPGNVIYQTAEDGLSDT 89

Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE----IEGDMGESLPGM 174
           +K  L++     ++ L I D        D  +  ++     R      I+G +G  +   
Sbjct: 90  IKPRLLAAGAACDKVLMIDDSDRALTLEDDRLEQAIVQTHARLVVLDPIQGYIGAGVDMH 149

Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234
           +A  +   + ++     +  C +V I  M    G          G  ++ F ++ R  + 
Sbjct: 150 RANEIRPLMHRIGVLAEKHHCAIVLIGHMNKNSGEKSSYR----GLGSIDFQAAAR-SVL 204

Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK 294
            VG IKD  ++      V   K+ +A   K + F +   +G  + GE             
Sbjct: 205 VVGRIKDDPTL----RVVCPTKSSLAPEGKAIAFRLDPEQGFQWAGEYDISAEDL----- 255

Query: 295 SGAWFSFKGQRLGQGRENSKIFLRE 319
                   G   G     ++ FL+E
Sbjct: 256 ------LSGNSRGHKLREAQNFLQE 274


>gi|11499079|ref|NP_070313.1| hypothetical protein AF1484 [Archaeoglobus fulgidus DSM 4304]
 gi|2649091|gb|AAB89773.1| predicted coding region AF_1484 [Archaeoglobus fulgidus DSM 4304]
          Length = 53

 Score = 36.7 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95
           VSSG  GLD  L  GG+ KGR   I G    GKTTL LH +       
Sbjct: 2  RVSSGVDGLDEILN-GGYVKGRAYLIRGEPGCGKTTLGLHFLIDGVGRD 49


>gi|304379174|ref|ZP_07361918.1| helicase DnaB [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|304342249|gb|EFM08144.1| helicase DnaB [Staphylococcus aureus subsp. aureus ATCC BAA-39]
          Length = 413

 Score = 36.7 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 70/174 (40%), Gaps = 15/174 (8%)

Query: 8   NIVDKSKALEAALSQIQ---RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64
           N++D+ K L+   ++ +   + + +  + +L S     +    + +G   +D    IGG 
Sbjct: 120 NLIDELKDLKTITNKKEDGTKKFVEEFVDELYSDSPKKQ----IKTGYKLMDYK--IGGL 173

Query: 65  PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA----LDSIYARKLGVDLK 120
              +++ I    S GKT  AL+ +    + G   +F   E      L  + +   G++L 
Sbjct: 174 EPSQLIVIAARPSVGKTGFALNMMLNIARNGYKTSFFSLETTGTSVLKRMLSTITGIELT 233

Query: 121 NLLISQPDTGEQALEITDML--VRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172
            +   +  T +   ++T+ +  +    +DI    ++     RA+      E   
Sbjct: 234 KIKEIRNLTPDDLTKLTNAMDQIMKLGIDISDKSNITPQDVRAQAMRHSDEQQV 287


>gi|168204772|ref|ZP_02630777.1| replicative DNA helicase [Clostridium perfringens E str. JGS1987]
 gi|170663688|gb|EDT16371.1| replicative DNA helicase [Clostridium perfringens E str. JGS1987]
          Length = 427

 Score = 36.7 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 14/82 (17%)

Query: 13  SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72
           S+ +E    +I++ +   +            GI  +S+G   +D A    G  +   + +
Sbjct: 150 SEVMEKTFEKIEKAFSSKS------------GITGISTGIRKIDNA--TNGLERKEFIVL 195

Query: 73  YGPESSGKTTLALHTIAQSQKT 94
               S GKT L+L  +   Q  
Sbjct: 196 GARPSMGKTALSLAIMENIQGK 217


>gi|153821414|ref|ZP_01974081.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|229509122|ref|ZP_04398609.1| hypothetical protein VCE_000524 [Vibrio cholerae B33]
 gi|229608794|ref|YP_002879442.1| hypothetical protein VCD_003716 [Vibrio cholerae MJ-1236]
 gi|126521014|gb|EAZ78237.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|229353879|gb|EEO18814.1| hypothetical protein VCE_000524 [Vibrio cholerae B33]
 gi|229371449|gb|ACQ61872.1| hypothetical protein VCD_003716 [Vibrio cholerae MJ-1236]
          Length = 691

 Score = 36.7 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 300 SFKGQRLGQGRENSKIFLREN---IEIAENIESLLRQ 333
           S   + + QG +N K  L EN    + AE ++SL+R+
Sbjct: 63  SDDDEVVMQGLDNVKKILAENYVRPDEAEKVKSLIRE 99


>gi|254850933|ref|ZP_05240283.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|21885317|gb|AAL59723.1| unknown [Vibrio cholerae]
 gi|254846638|gb|EET25052.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|259156289|gb|ACV96235.1| conserved hypothetical protein [Vibrio cholerae Ind4]
          Length = 691

 Score = 36.7 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 300 SFKGQRLGQGRENSKIFLREN---IEIAENIESLLRQ 333
           S   + + QG +N K  L EN    + AE ++SL+R+
Sbjct: 63  SDDDEVVMQGLDNVKKILAENYVRPDEAEKVKSLIRE 99


>gi|304404618|ref|ZP_07386279.1| ABC transporter related protein [Paenibacillus curdlanolyticus YK9]
 gi|304346425|gb|EFM12258.1| ABC transporter related protein [Paenibacillus curdlanolyticus YK9]
          Length = 288

 Score = 36.7 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 23/66 (34%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P G+   I G   SGK+TL L  +   +   G   + D+  A      + L   +  + 
Sbjct: 29  LPTGKKTAICGHNGSGKSTLFLQAVGIHKPERGAVLWNDSPIAYRPKDLKALRQHIGLVF 88

Query: 124 ISQPDT 129
                 
Sbjct: 89  QDPEHQ 94


>gi|121997448|ref|YP_001002235.1| DNA repair protein RadA [Halorhodospira halophila SL1]
 gi|121588853|gb|ABM61433.1| DNA replication and repair protein RadA [Halorhodospira halophila
           SL1]
          Length = 449

 Score = 36.7 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 61/180 (33%), Gaps = 18/180 (10%)

Query: 28  GKGA-IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86
           G+GA +  L    +  E    +++G   LD  LG GG   G +V I G    GK+T  L 
Sbjct: 48  GRGAEVTTLAEVSTAPEP--RLATGVAELDRVLG-GGLVPGSVVLIGGEPGIGKST-LLL 103

Query: 87  TIAQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144
               +        +   E +L  +     +LGV    + +      E+ +   + +    
Sbjct: 104 QTLATLSRDHAALYATGEESLQQVALRGHRLGVADDAMKLMAETAVEEVVAAAERI---- 159

Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204
               +V+DSV      A        S     A        +L      +   ++ +  + 
Sbjct: 160 RPRALVLDSVQTFHTSALGSAPGSVSQVRESAA-------QLVRLAKTTGTAVILVGHVT 212


>gi|119386648|ref|YP_917703.1| DNA repair protein RadA [Paracoccus denitrificans PD1222]
 gi|119377243|gb|ABL72007.1| DNA replication and repair protein RadA [Paracoccus denitrificans
           PD1222]
          Length = 454

 Score = 36.7 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 50/137 (36%), Gaps = 3/137 (2%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           +SG   LD  LG GG   G  + + G    GK+TL L   A   + G    +V  E A  
Sbjct: 71  TSGIAELDRVLG-GGLVPGSAILVGGDPGIGKSTLLLQAAAAFARAGQQAIYVSGEEASA 129

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168
            +  R   + L +  +      E AL      + +   D+ VIDS+  L           
Sbjct: 130 QVRLRAQRLGLGDAPVRLGA--ETALRDILTTLDAERPDVAVIDSIQTLWSDRIEAAPGS 187

Query: 169 ESLPGMQARLMSQALRK 185
            +     A  +    ++
Sbjct: 188 VAQVRASAHELVIFAKR 204


>gi|134295274|ref|YP_001119009.1| DnaB domain-containing protein [Burkholderia vietnamiensis G4]
 gi|134138431|gb|ABO54174.1| DnaB domain protein helicase, C-terminal domain protein
           [Burkholderia vietnamiensis G4]
          Length = 455

 Score = 36.7 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
           V+S+G   LD AL  GG   G  + +      GKT+LAL+    +    G 
Sbjct: 182 VISTGYDDLDRALN-GGLRPGWSLILAARPGMGKTSLALNIATHAAADHGV 231


>gi|91782659|ref|YP_557865.1| hypothetical protein Bxe_A3166 [Burkholderia xenovorans LB400]
 gi|91686613|gb|ABE29813.1| Conserved hypothetical protein [Burkholderia xenovorans LB400]
          Length = 279

 Score = 36.7 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 2/110 (1%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVE-IYGPESSGK-TTLALHTIAQSQKTGGTCAFV 101
              V+SSG   LD  L   G+  G + E +      G+   LA      + + G     V
Sbjct: 30  DSRVISSGYAELDKLLPGQGWSVGGLTELLIEHGGVGEVRLLAHALCYLTMQAGRHVMLV 89

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
              +   +   R  GVD++ +L  +    +        L ++G   ++V 
Sbjct: 90  APPYQPCAAALRAWGVDVERVLWVRSSEDQALWAAAQALKQNGIGAVLVW 139


>gi|327197750|ref|YP_004301448.1| gp115 [Brochothrix phage A9]
 gi|299810350|gb|ADJ53149.1| gp115 [Brochothrix phage A9]
          Length = 503

 Score = 36.7 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 45/161 (27%), Gaps = 28/161 (17%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           MD  +     DK +AL               IM               S+GS   D   G
Sbjct: 162 MDKSQRQAQADKLRALNT------------NIM---------------STGSPVWDRMTG 194

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG  KG +  I      GKT   +        +G   A++  E     ++ R   V + 
Sbjct: 195 -GGLAKGELGAIGASSGHGKTMHMVSLAVAYILSGRNIAYIALEELDSRMFLRFFRVVIG 253

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161
            L  +          I  +      VD    D +       
Sbjct: 254 KLADAGHIDKSAVEHIVSIDALPDVVDSGSFDKILDTYTNK 294


>gi|299142691|ref|ZP_07035821.1| DNA repair protein RadA [Prevotella oris C735]
 gi|298575906|gb|EFI47782.1| DNA repair protein RadA [Prevotella oris C735]
          Length = 460

 Score = 36.7 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 6/106 (5%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
            L+  LG GG   G IV + G    GK+TL L TI    +      +V  E +   I  R
Sbjct: 84  ELNRVLG-GGLVSGSIVLLGGEPGIGKSTLTLQTILHMNER--RILYVSGEESAHQIKMR 140

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
              +   + ++   +T   +LE     ++    +++VIDS+  ++ 
Sbjct: 141 AERIGGNSEVMILCET---SLESIFDNIKEVKPELVVIDSIQTIST 183


>gi|237741242|ref|ZP_04571723.1| replicative DNA helicase [Fusobacterium sp. 4_1_13]
 gi|229430774|gb|EEO40986.1| replicative DNA helicase [Fusobacterium sp. 4_1_13]
          Length = 446

 Score = 36.7 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 2/94 (2%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           +  G   IM++            + +G + LD      G     ++ +    + GKT  A
Sbjct: 162 KTAGVEEIMRMERVSENRGKTLGIPTGFIDLDRM--TSGLNNSDLIILAARPAMGKTAFA 219

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           L+    + K          E  +  +Y R L ++
Sbjct: 220 LNVALNAGKEKKNVLVFSLEMPVQQLYQRLLSIE 253


>gi|154148227|ref|YP_001406478.1| hypothetical protein CHAB381_0916 [Campylobacter hominis ATCC
           BAA-381]
 gi|153804236|gb|ABS51243.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381]
          Length = 270

 Score = 36.7 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 287 VKASIVDKSGAWFSFKGQRLGQGRENSKIFLR 318
            + S V K   WFS++ +RLGQG +  +I+L 
Sbjct: 198 EEISHVKKGDKWFSYECERLGQGDKKDEIYLE 229


>gi|294784547|ref|ZP_06749836.1| replicative DNA helicase [Fusobacterium sp. 3_1_27]
 gi|294487763|gb|EFG35122.1| replicative DNA helicase [Fusobacterium sp. 3_1_27]
          Length = 446

 Score = 36.7 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 2/94 (2%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           +  G   IM++            + +G + LD      G     ++ +    + GKT  A
Sbjct: 162 KTAGVEEIMRMERVSENRGKTLGIPTGFIDLDRM--TSGLNNSDLIILAARPAMGKTAFA 219

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           L+    + K          E  +  +Y R L ++
Sbjct: 220 LNVALNAGKEKKNVLVFSLEMPVQQLYQRLLSIE 253


>gi|20065998|ref|NP_612864.1| putative helicase [Clostridium phage phi3626]
 gi|168211318|ref|ZP_02636943.1| replicative DNA helicase [Clostridium perfringens B str. ATCC 3626]
 gi|19908329|gb|AAL96805.1| putative helicase [Clostridium phage phi3626]
 gi|170710692|gb|EDT22874.1| replicative DNA helicase [Clostridium perfringens B str. ATCC 3626]
          Length = 427

 Score = 36.7 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 20/91 (21%)

Query: 8   NIVDKSKA------LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61
           +  DK K       +E    +I++ +   +            GI  +S+G   +D A   
Sbjct: 139 SSEDKEKVYTMSEVMEKTFEKIEKAFSSKS------------GITGISTGIRKIDNA--T 184

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92
            G  K   + +    S GKT L+L  +   Q
Sbjct: 185 NGLEKKEFIVLGARPSMGKTALSLAIMENIQ 215


>gi|328766047|gb|EGF76117.1| hypothetical protein BATDEDRAFT_93022 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 351

 Score = 36.7 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 61/213 (28%), Gaps = 22/213 (10%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
            GG  +G ++ +    S GKT  AL+      K GG       E     +  R +    +
Sbjct: 132 TGGLKRGDLIILAARPSVGKTAFALNLALGHCKNGGASLIYSLEMGTKQLLKRMISA--E 189

Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
            +   +    E    I   +  +   + +V      L   A             +   + 
Sbjct: 190 EIFDKKHTLSEMRAGIRKQVHENPKQNHLVFIDYLQLIKPATF-------HRDRRDLEIG 242

Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
           +  R+L          +V ++Q+   +          +             D+R  G+I+
Sbjct: 243 EMTRELKLLALELNIPIVLLSQLSRGVDSRQDKRPLMS-------------DLRESGNIE 289

Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273
               +     R      +     +    D  +G
Sbjct: 290 QDADVISFLYRDDYYDKRSKQKNEMERLDREFG 322


>gi|256846385|ref|ZP_05551842.1| replicative DNA helicase [Fusobacterium sp. 3_1_36A2]
 gi|256718154|gb|EEU31710.1| replicative DNA helicase [Fusobacterium sp. 3_1_36A2]
          Length = 446

 Score = 36.7 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 2/94 (2%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           +  G   IM++            + +G + LD      G     ++ +    + GKT  A
Sbjct: 162 KTAGVEEIMRMERVSENRGKTLGIPTGFIDLDRM--TSGLNNSDLIILAARPAMGKTAFA 219

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           L+    + K          E  +  +Y R L ++
Sbjct: 220 LNVALNAGKEKKNVLVFSLEMPVQQLYQRLLSIE 253


>gi|126651537|ref|ZP_01723740.1| AAA ATPase [Bacillus sp. B14905]
 gi|126591486|gb|EAZ85592.1| AAA ATPase [Bacillus sp. B14905]
          Length = 569

 Score = 36.7 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 49/133 (36%), Gaps = 6/133 (4%)

Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258
           FI       G ++   E+ T        ++++ D      +K       ++  V   + +
Sbjct: 169 FIWHHMQGAGKLYYPTESPTAEELSIGVTALQYDGYFFEDMKHGKGKIYSRQGVLEAEGQ 228

Query: 259 MASPFKQVEFDIMYGEG-ISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317
                   +  + Y  G  S+ GEL+  G K       G +++ +G+ +  G       L
Sbjct: 229 FKEDAMTGQGVLYYPNGQASYIGELVH-GKKHG----RGDFYNEEGKIIYSGEFIEDERL 283

Query: 318 RENIEIAENIESL 330
           R   EI + IE L
Sbjct: 284 RITPEIEQEIEKL 296


>gi|293392261|ref|ZP_06636595.1| replicative DNA helicase [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290952795|gb|EFE02914.1| replicative DNA helicase [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 468

 Score = 36.7 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 53/149 (35%), Gaps = 17/149 (11%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LE  +S+I+++          SQ     G+  VS+G   LD      G  K  ++ +   
Sbjct: 179 LENTISKIEQL----------SQAKDHSGVTGVSTGFKDLDKK--TAGLQKSDLIIVAAR 226

Query: 76  ESSGKTTLALHTIAQSQ-KTGGTCAFVDAEHALDSIYARKLGV----DLKNLLISQPDTG 130
            S GKTT A++    +   +         E   + I  R L      D   +   Q    
Sbjct: 227 PSMGKTTFAMNLCENAALDSEKPVLVFSLEMPAEQIMMRSLASLSRVDQTKIRTGQGLDD 286

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTP 159
               +I+  +        + ID  + LTP
Sbjct: 287 NDWAKISSTMGVLAKKPNLFIDDSSGLTP 315


>gi|284163775|ref|YP_003402054.1| circadian clock protein, KaiC [Haloterrigena turkmenica DSM 5511]
 gi|284013430|gb|ADB59381.1| putative circadian clock protein, KaiC [Haloterrigena turkmenica
           DSM 5511]
          Length = 362

 Score = 36.7 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 1/77 (1%)

Query: 38  QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97
             ++   +  +  G  GLD  +  GG P+  ++   G   +GKTT  L  +      G  
Sbjct: 125 DEAVDSDLPRLELGIEGLDRMI-QGGVPERSLLVAMGSAGTGKTTFGLQFLEHGLARGEN 183

Query: 98  CAFVDAEHALDSIYARK 114
             F+  E +   +    
Sbjct: 184 AVFITLEESRRRVIDSA 200


>gi|260494907|ref|ZP_05815036.1| replicative DNA helicase [Fusobacterium sp. 3_1_33]
 gi|260197350|gb|EEW94868.1| replicative DNA helicase [Fusobacterium sp. 3_1_33]
          Length = 446

 Score = 36.7 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 2/94 (2%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           +  G   IM++            + +G + LD      G     ++ +    + GKT  A
Sbjct: 162 KTAGVEEIMRMERVSENRGKTLGIPTGFIDLDRM--TSGLNNSDLIILAARPAMGKTAFA 219

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           L+    + K          E  +  +Y R L ++
Sbjct: 220 LNVALNAGKEKKNVLVFSLEMPVQQLYQRLLSIE 253


>gi|120611398|ref|YP_971076.1| hypothetical protein Aave_2734 [Acidovorax citrulli AAC00-1]
 gi|120589862|gb|ABM33302.1| conserved hypothetical protein [Acidovorax citrulli AAC00-1]
          Length = 250

 Score = 36.7 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 1/106 (0%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEI-YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
            + +G   LD AL   G+P   ++++        +  L    +A    TG     V    
Sbjct: 23  TLPTGHAVLDAALPGAGWPLRAVIDVLQPQPGVAELRLLSPALAAVAATGEDLVLVGPPM 82

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
                  ++LG+D   +     DT    L   + LVR+G+   IV 
Sbjct: 83  PPHPAGIQQLGIDACRVTWIAADTPLDRLWTVEQLVRAGSSGAIVA 128


>gi|110639980|ref|YP_680190.1| DNA repair protein RadA [Cytophaga hutchinsonii ATCC 33406]
 gi|110282661|gb|ABG60847.1| DNA repair protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 455

 Score = 36.7 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 5/114 (4%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + + +    L+  LG GG   G IV I G    GK+TL L    +         +V  E 
Sbjct: 69  QRIITPDGELNRVLG-GGIVPGSIVLIGGEPGIGKSTLMLQVALKLSTV--KVLYVSGEE 125

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           +   I  R     ++    +     E + +     +     ++++IDS+  L  
Sbjct: 126 SEQQIKMRA--ERIEVPSDACYILTETSTQNIFKQIEMLQPEVLIIDSIQTLHS 177


>gi|262198478|ref|YP_003269687.1| ABC transporter [Haliangium ochraceum DSM 14365]
 gi|262081825|gb|ACY17794.1| ABC transporter related protein [Haliangium ochraceum DSM 14365]
          Length = 559

 Score = 36.7 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 1/83 (1%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P+G IV I GP  +GKTTL      Q Q   G     D           +  +D    +
Sbjct: 350 LPRGGIVGIIGPNGAGKTTLFRMITGQEQPDEGKLIVGDTVQISYVD-QSRDALDPDATV 408

Query: 124 ISQPDTGEQALEITDMLVRSGAV 146
             +   G + LE+    V S A 
Sbjct: 409 WQEISDGAEFLEMGKRQVPSRAY 431


>gi|195567539|ref|XP_002107317.1| GD17397 [Drosophila simulans]
 gi|194204723|gb|EDX18299.1| GD17397 [Drosophila simulans]
          Length = 242

 Score = 36.7 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 13/116 (11%)

Query: 51  GSLGLDIAL-GIGGFPKGRIVEIYGPESSGKT----TLALHTIAQSQKTGGTCAF----- 100
           GS  L  A+ G  GF    +VEI GP +SGK+     L  H +A  Q  G   +      
Sbjct: 2   GSRQLHFAVFGSCGFEADTLVEISGPGNSGKSLVLQQLVAHCLAPYQFGGRQWSVLLINL 61

Query: 101 ---VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153
              ++ E    SI        +  ++ ++  T EQ  EI    +          + 
Sbjct: 62  SHKINRESLAKSIRMELKAYTVGEVVAAKCPTDEQLAEIAGECMSRVRFLNCFAND 117


>gi|82913649|ref|XP_728728.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23485226|gb|EAA20293.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 707

 Score = 36.7 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 1/83 (1%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGP-ESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
            V+ SG   LD  L  GG+P G + EI  P +  G+  L L  + +    G    +V   
Sbjct: 199 PVIPSGHAALDAVLPAGGWPAGALTEIITPAQGIGELRLLLPLMRRIXGDGRRLVWVAPP 258

Query: 105 HALDSIYARKLGVDLKNLLISQP 127
               +    + GV++  +L+   
Sbjct: 259 FEPYAPALVQAGVEIGRMLVVAV 281


>gi|154483713|ref|ZP_02026161.1| hypothetical protein EUBVEN_01417 [Eubacterium ventriosum ATCC
           27560]
 gi|149735623|gb|EDM51509.1| hypothetical protein EUBVEN_01417 [Eubacterium ventriosum ATCC
           27560]
          Length = 232

 Score = 36.4 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 21/85 (24%)

Query: 20  LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79
           L  I++ +G G            E I  V  G           G  KG+I  + GP  SG
Sbjct: 5   LKDIKKSFGTG------------ENITQVLKGI--------SCGIEKGKICVLLGPSGSG 44

Query: 80  KTTLALHTIAQSQKTGGTCAFVDAE 104
           K+TL L+ I   +K  G    +D E
Sbjct: 45  KSTL-LNIIGGIEKADGGSISIDGE 68


>gi|78223765|ref|YP_385512.1| primary replicative DNA helicase [Geobacter metallireducens GS-15]
 gi|78195020|gb|ABB32787.1| primary replicative DNA helicase [Geobacter metallireducens GS-15]
          Length = 456

 Score = 36.4 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99
           E +  V +G   LD      GF +G ++ I G  S GKT  AL+    +     T A
Sbjct: 181 EHVTGVPTGFYDLDEM--TAGFQRGDLIIIAGRPSMGKTAFALNIAQHAAAHASTPA 235


>gi|289523466|ref|ZP_06440320.1| replicative DNA helicase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503158|gb|EFD24322.1| replicative DNA helicase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 439

 Score = 36.4 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 14/75 (18%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           L A    ++  + KG +            +  + SG +  D     GGF  G +  +   
Sbjct: 157 LNATFRYLEEQFLKGKV------------VTGIPSGYIDFDRV--TGGFQPGSLTILAAR 202

Query: 76  ESSGKTTLALHTIAQ 90
            S GKT LAL+    
Sbjct: 203 PSMGKTALALNIAQH 217


>gi|260173833|ref|ZP_05760245.1| glucose-1-phosphate cytidylyltransferase [Bacteroides sp. D2]
 gi|315922096|ref|ZP_07918336.1| glucose-1-phosphate cytidylyltransferase [Bacteroides sp. D2]
 gi|313695971|gb|EFS32806.1| glucose-1-phosphate cytidylyltransferase [Bacteroides sp. D2]
          Length = 258

 Score = 36.4 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 55/181 (30%), Gaps = 10/181 (5%)

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE--- 215
           P  EI G         +          + +   +      F N       V F   E   
Sbjct: 24  PMIEIGGRPILWHIMKEYAYYGFTEFIICAGYRQQYIKEWFANYFLHNSDVTFDYTEGKK 83

Query: 216 -TTTGGNALKFYSSVRLDI----RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270
             T   +  + +    +D        G IK      GN++      + +         + 
Sbjct: 84  IMTIHESHCEPWKVTVVDTGLSTMTGGRIKRIQKYIGNESFFMTYGDAVCDVDIHKLLEF 143

Query: 271 MYGEGISFFGELIDLGVKASIVDKSG--AWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328
             G G       + L  +  ++D  G  A  SF+ + +  G   +  ++  N EI + IE
Sbjct: 144 HKGHGKIASLTAVVLRQEKGVLDIGGDNAVKSFREKEISDGASINAGYMVLNPEIFDYIE 203

Query: 329 S 329
           +
Sbjct: 204 N 204


>gi|237743485|ref|ZP_04573966.1| replicative DNA helicase [Fusobacterium sp. 7_1]
 gi|256027044|ref|ZP_05440878.1| replicative DNA helicase [Fusobacterium sp. D11]
 gi|289765027|ref|ZP_06524405.1| replicative DNA helicase [Fusobacterium sp. D11]
 gi|229433264|gb|EEO43476.1| replicative DNA helicase [Fusobacterium sp. 7_1]
 gi|289716582|gb|EFD80594.1| replicative DNA helicase [Fusobacterium sp. D11]
          Length = 446

 Score = 36.4 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 2/94 (2%)

Query: 25  RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84
           +  G   IM++            + +G + LD      G     ++ +    + GKT  A
Sbjct: 162 KTAGVEEIMRMERVSENRGKTLGIPTGFIDLDRM--TSGLNNSDLIILAARPAMGKTAFA 219

Query: 85  LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118
           L+    + K          E  +  +Y R L ++
Sbjct: 220 LNVALNAGKEKKNVLVFSLEMPVQQLYQRLLSIE 253


>gi|51594941|ref|YP_069132.1| ABC transporter ATP-binding protein [Yersinia pseudotuberculosis IP
           32953]
 gi|153949023|ref|YP_001402444.1| ABC transporter ATP-binding protein [Yersinia pseudotuberculosis IP
           31758]
 gi|170025833|ref|YP_001722338.1| putative ABC transporter ATP-binding protein [Yersinia
           pseudotuberculosis YPIII]
 gi|186893941|ref|YP_001871053.1| putative ABC transporter ATP-binding protein [Yersinia
           pseudotuberculosis PB1/+]
 gi|51588223|emb|CAH19830.1| putative ABC drug efflux transporter, fused ATP binding domains
           [Yersinia pseudotuberculosis IP 32953]
 gi|152960518|gb|ABS47979.1| ABC transporter, ATP-binding protein [Yersinia pseudotuberculosis
           IP 31758]
 gi|169752367|gb|ACA69885.1| ABC transporter related [Yersinia pseudotuberculosis YPIII]
 gi|186696967|gb|ACC87596.1| ABC transporter related [Yersinia pseudotuberculosis PB1/+]
          Length = 555

 Score = 36.4 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 3/113 (2%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG +    E +   S G   L   L     PKG IV I GP  +GK+TL      Q Q 
Sbjct: 318 RLGDKVLEVEHLSK-SYGDRLLIDDLTFA-LPKGAIVGIIGPNGAGKSTLFRMLSGQEQP 375

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
             GT +  D          R   +D    +  +   G+  ++I +  + S A 
Sbjct: 376 DSGTISLGDTVQLASVDQFRD-NMDDSKTVWEEVSGGQDIMKIGNFELPSRAY 427


>gi|322807659|emb|CBZ05234.1| cell division protein FtsH [Clostridium botulinum H04402 065]
          Length = 658

 Score = 36.4 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           E +K  L+EN E+   I   L +   L+ D  +    I  +D+ + ++T+  E
Sbjct: 566 EKAKRMLKENEELLNKITEKLLEKETLMGDEFMA--IIKGEDETELNETEIDE 616


>gi|242065454|ref|XP_002454016.1| hypothetical protein SORBIDRAFT_04g023090 [Sorghum bicolor]
 gi|241933847|gb|EES06992.1| hypothetical protein SORBIDRAFT_04g023090 [Sorghum bicolor]
          Length = 292

 Score = 36.4 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 95/250 (38%), Gaps = 34/250 (13%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV--- 101
           +  +S G   LD  L  GG P   + EI G  ++GKT L L     + ++  + + +   
Sbjct: 36  VTKLSLGCPLLDRLLS-GGLPAASVTEIAGESATGKTQLCLQLALLAPQSPLSASSLFLH 94

Query: 102 -DAEHALDSIY---ARKLGVDLKNLLISQPDTGEQALEITDMLV----------RSGAVD 147
            D    L  +     +     L ++L++   +    L +                   + 
Sbjct: 95  SDLPFPLHRLRRLAPKSRPDILDHVLVAAAHSPTDLLSLLARAQRLLANPGRSPHRLPIR 154

Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207
           +I++DS+A+L  RA+ +    +     ++ L  Q   KL     R +C++V  NQ+   +
Sbjct: 155 LILLDSIASLF-RADFDASPAD--LRRRSALFFQISAKLKELAYRHQCVVVVTNQVVDVV 211

Query: 208 GV--------MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN-QTRVKVVKNK 258
                       G   +   G A     ++RL + R       D  +G+ + R+KV    
Sbjct: 212 EEGAGNTVAWSSGRRVSPALGIAWANCVNMRLFLTREV---GGDGASGSARRRMKVAFAP 268

Query: 259 MASPFKQVEF 268
              P +  EF
Sbjct: 269 HL-PERSCEF 277


>gi|170757175|ref|YP_001782967.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum B1 str.
           Okra]
 gi|169122387|gb|ACA46223.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum B1 str.
           Okra]
          Length = 658

 Score = 36.4 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           E +K  L+EN E+   I   L +   L+ D  +    I  +D+ + ++T+  E
Sbjct: 566 EKAKRMLKENEELLNKITEKLLEKETLMGDEFMA--IIKGEDETELNETEIDE 616


>gi|148381284|ref|YP_001255825.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str.
           ATCC 3502]
 gi|153931204|ref|YP_001385661.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936273|ref|YP_001389067.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str.
           Hall]
 gi|148290768|emb|CAL84899.1| cell division protein [Clostridium botulinum A str. ATCC 3502]
 gi|152927248|gb|ABS32748.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum A str.
           ATCC 19397]
 gi|152932187|gb|ABS37686.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum A str.
           Hall]
          Length = 658

 Score = 36.4 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           E +K  L+EN E+   I   L +   L+ D  +    I  +D+ + ++T+  E
Sbjct: 566 EKAKRMLKENEELLNKITEKLLEKETLMGDEFMA--IIKGEDETELNETEIDE 616


>gi|45443468|ref|NP_995007.1| putative ABC transporter ATP-binding protein [Yersinia pestis
           biovar Microtus str. 91001]
 gi|145600442|ref|YP_001164518.1| putative ABC transporter ATP-binding protein [Yersinia pestis
           Pestoides F]
 gi|162419068|ref|YP_001605397.1| putative ABC transporter ATP-binding protein [Yersinia pestis
           Angola]
 gi|229836973|ref|ZP_04457138.1| ABC transporter ATP-binding protein yjjK [Yersinia pestis Pestoides
           A]
 gi|45438337|gb|AAS63884.1| ATPase components of ABC transporters with duplicated ATPase
           domains [Yersinia pestis biovar Microtus str. 91001]
 gi|145212138|gb|ABP41545.1| ATPase [Yersinia pestis Pestoides F]
 gi|162351883|gb|ABX85831.1| ABC transporter, ATP-binding protein [Yersinia pestis Angola]
 gi|229705916|gb|EEO91925.1| ABC transporter ATP-binding protein yjjK [Yersinia pestis Pestoides
           A]
          Length = 555

 Score = 36.4 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 3/113 (2%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG +    E +   S G   L   L     PKG IV I GP  +GK+TL      Q Q 
Sbjct: 318 RLGDKVLEVEHLSK-SYGDRLLIDDLTFA-LPKGAIVGIIGPNGAGKSTLFRMLSGQEQP 375

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
             GT +  D          R   +D    +  +   G+  ++I +  + S A 
Sbjct: 376 DSGTISLGDTVQLASVDQFRD-NMDDSKTVWEEVSGGQDIMKIGNFELPSRAY 427


>gi|194288820|ref|YP_002004727.1| branched-chain amino acid ABC transporter permease/ATP-binding
           protein [Cupriavidus taiwanensis LMG 19424]
 gi|193222655|emb|CAQ68658.1| putative branched-chain amino acid transport system permease,
           ATP_binding component [Cupriavidus taiwanensis LMG
           19424]
          Length = 268

 Score = 36.4 bits (82), Expect = 6.6,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 57/170 (33%), Gaps = 7/170 (4%)

Query: 29  KGAIMQLGSQGSIFE------GIEVVSSGSLGLDIALGIGG-FPKGRIVEIYGPESSGKT 81
           K AI + G+  +          +E V+    GLD+   +    P G IV + GP  SGKT
Sbjct: 2   KSAIAEFGTSAAGAAGAQALLRVEAVAHSFGGLDVLRNVAFDVPAGGIVGLIGPNGSGKT 61

Query: 82  TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141
           T         +  GG       +   DS+  R     ++     Q       LE      
Sbjct: 62  TCFNIISGFLRPRGGKVLLAGRDITADSVQQRSRAGLVRTFQTPQVFEHMTVLENLMAGC 121

Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191
                  +V   + +   R E++     +L   +   +   L+    ++ 
Sbjct: 122 HKATRSGVVHAMLRSPLSRRELQSMHEAALACARKFGLEGLLQHRAGALP 171


>gi|153940193|ref|YP_001392688.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum F str.
           Langeland]
 gi|152936089|gb|ABS41587.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum F str.
           Langeland]
 gi|295320670|gb|ADG01048.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum F str.
           230613]
          Length = 658

 Score = 36.4 bits (82), Expect = 6.6,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           E +K  L+EN E+   I   L +   L+ D  +    I  +D+ + ++T+  E
Sbjct: 566 EKAKRMLKENEELLNKITEKLLEKETLMGDEFMA--IIKGEDETELNETEIDE 616


>gi|298674174|ref|YP_003725924.1| putative circadian clock protein KaiC [Methanohalobium evestigatum
           Z-7303]
 gi|298287162|gb|ADI73128.1| putative circadian clock protein, KaiC [Methanohalobium evestigatum
           Z-7303]
          Length = 246

 Score = 36.4 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 4/82 (4%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV---D 102
           E VS+   GLD  L  GGF    +  + G   +GKT      + +  K G     +   +
Sbjct: 13  ERVSTEIPGLDDML-HGGFFTETVNVVSGNSGTGKTIFGSQFLYEGAKKGEKGMLIITSE 71

Query: 103 AEHALDSIYARKLGVDLKNLLI 124
              +L        G DLK +  
Sbjct: 72  ESKSLVREMKTSFGWDLKEMEQ 93


>gi|332171878|gb|AEE21132.1| replicative DNA helicase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 478

 Score = 36.4 bits (82), Expect = 6.8,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 62/192 (32%), Gaps = 14/192 (7%)

Query: 1   MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
           M   K   I +K  A       I+ V  K  I +L       + +  VS+G   LD    
Sbjct: 167 MAESKVFEIAEKRTAKNEGPRGIESVLTK-TIDRLEELVKNNKEVTGVSTGYTDLDKK-- 223

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFVDAEHALDSIYARKLG--V 117
             G     ++ +    S GKTT A++    +             E   + I  R L    
Sbjct: 224 TSGLQPSDLIIVAARPSMGKTTFAMNLCENAMLLEEKPVLVFSLEMPAEQIMMRMLASLS 283

Query: 118 DLKNLLISQPDTGEQA-LEITDMLVRSGAVDIIVIDSVAALTP-------RAEIEGDMGE 169
            +    I      ++    +++ +      D + +D  + LTP       R       G 
Sbjct: 284 RVDQTKIRTAQLDDEDWARMSNTMAMLKDKDNLYVDDSSGLTPMEVRTRARKLARDRGGI 343

Query: 170 SLPGMQARLMSQ 181
           SL  +    + Q
Sbjct: 344 SLIMIDYLQLMQ 355


>gi|281599674|gb|ADA72658.1| Replication protein P [Shigella flexneri 2002017]
          Length = 483

 Score = 36.4 bits (82), Expect = 7.0,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 18/114 (15%)

Query: 4   RKEMNIVDKSKALEAALSQIQ-----------RVYGKGAIMQ-----LGSQGSIFEGIEV 47
           R  M    K +A++A  +Q+            R +G+  +M+     L  +         
Sbjct: 138 RNGMTATQKYEAIQAIFTQLTDHAKTGSRRGLRSFGE--VMEDWVSDLEKRFDPSGEQRG 195

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           +S+G   LD  L   G  KG +  I      GKTTL               A +
Sbjct: 196 MSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKKPALM 249


>gi|297567924|ref|YP_003686894.1| replicative DNA helicase [Meiothermus silvanus DSM 9946]
 gi|296852373|gb|ADH65386.1| replicative DNA helicase [Meiothermus silvanus DSM 9946]
          Length = 437

 Score = 36.4 bits (82), Expect = 7.0,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 2/70 (2%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
           + V +G   LD    IGG  +G +  I      GKT LAL         G   A    E 
Sbjct: 178 DEVQTGFRALDEI--IGGLGRGSLNVIAARPGMGKTALALSIARNVACRGQAVAIFSLEM 235

Query: 106 ALDSIYARKL 115
               +  R L
Sbjct: 236 PAVQLVTRML 245


>gi|115491801|ref|XP_001210528.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114197388|gb|EAU39088.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 743

 Score = 36.4 bits (82), Expect = 7.0,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 46  EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80
             +S+    LD  L  GG P G + E+ G  +SGK
Sbjct: 284 SSISTLDPALDALL-HGGIPTGYLTEVTGESASGK 317


>gi|320182374|gb|EFW57272.1| replication protein P [Shigella boydii ATCC 9905]
          Length = 478

 Score = 36.4 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 18/114 (15%)

Query: 4   RKEMNIVDKSKALEAALSQIQ-----------RVYGKGAIMQ-----LGSQGSIFEGIEV 47
           R  M    K +A++A  +Q+            R +G+  +M+     L  +         
Sbjct: 133 RNGMTATQKYEAIQAIFTQLTDHAKTGSRRGLRSFGE--VMEDWVSDLEKRFDPSGEQRG 190

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           +S+G   LD  L   G  KG +  I      GKTTL               A +
Sbjct: 191 MSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKKPALM 244


>gi|108810482|ref|YP_646249.1| ATPase [Yersinia pestis Nepal516]
 gi|229840330|ref|ZP_04460489.1| ABC transporter ATP-binding protein yjjK [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842410|ref|ZP_04462565.1| ABC transporter ATP-binding protein yjjK [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229900670|ref|ZP_04515794.1| ABC transporter ATP-binding protein yjjK [Yersinia pestis Nepal516]
 gi|108774130|gb|ABG16649.1| ATPase [Yersinia pestis Nepal516]
 gi|229682009|gb|EEO78101.1| ABC transporter ATP-binding protein yjjK [Yersinia pestis Nepal516]
 gi|229690720|gb|EEO82774.1| ABC transporter ATP-binding protein yjjK [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696696|gb|EEO86743.1| ABC transporter ATP-binding protein yjjK [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|320016991|gb|ADW00563.1| ABC transporter ATP-binding protein yjjK [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 381

 Score = 36.4 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 3/113 (2%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG +    E +   S G   L   L     PKG IV I GP  +GK+TL      Q Q 
Sbjct: 144 RLGDKVLEVEHLSK-SYGDRLLIDDLTFA-LPKGAIVGIIGPNGAGKSTLFRMLSGQEQP 201

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
             GT +  D          R   +D    +  +   G+  ++I +  + S A 
Sbjct: 202 DSGTISLGDTVQLASVDQFRD-NMDDSKTVWEEVSGGQDIMKIGNFELPSRAY 253


>gi|159044740|ref|YP_001533534.1| putative ABC transporter ATP-binding protein [Dinoroseobacter
           shibae DFL 12]
 gi|157912500|gb|ABV93933.1| hypothetical protein Dshi_2197 [Dinoroseobacter shibae DFL 12]
          Length = 551

 Score = 36.4 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 1/87 (1%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P G IV + GP  +GK+TL      Q Q  GGT ++ D           +  +D    +
Sbjct: 342 LPPGGIVGVIGPNGAGKSTLFRMLTGQEQPDGGTLSYGDTVQLAYVD-QSRDTLDPAATV 400

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIV 150
             +   G + +E+ D  + S A     
Sbjct: 401 WEEISGGGEIIELGDAQINSRAYCGAF 427


>gi|330860092|emb|CBX70416.1| uncharacterized ABC transporter ATP-binding protein yjjK [Yersinia
           enterocolitica W22703]
          Length = 555

 Score = 36.4 bits (82), Expect = 7.2,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 3/113 (2%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG +    E +   S G   L   L     PKG IV I GP  +GK+TL      Q Q 
Sbjct: 318 RLGDKVLEVEHLSK-SYGDRVLIDDLTFA-LPKGAIVGIIGPNGAGKSTLFRMLSGQEQP 375

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
             GT +  D    L S+   +  +D    +  +   G+  ++I +  + S A 
Sbjct: 376 DSGTISLGDT-VLLASVDQFRDNMDDSKTVWEEVSGGQDIMKIGNFEIPSRAY 427


>gi|251792440|ref|YP_003007166.1| replicative DNA helicase [Aggregatibacter aphrophilus NJ8700]
 gi|247533833|gb|ACS97079.1| replicative DNA helicase [Aggregatibacter aphrophilus NJ8700]
          Length = 466

 Score = 36.4 bits (82), Expect = 7.3,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 53/149 (35%), Gaps = 17/149 (11%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LE  +S+I+++          SQ     G+  VS+G   LD      G  K  ++ +   
Sbjct: 177 LENTISKIEQL----------SQTKDHSGVTGVSTGFKDLDKK--TAGLQKSDLIIVAAR 224

Query: 76  ESSGKTTLALHTIAQSQ-KTGGTCAFVDAEHALDSIYARKLGV----DLKNLLISQPDTG 130
            S GKTT A++    +   +         E   + I  R L      D   +   Q    
Sbjct: 225 PSMGKTTFAMNLCENAALGSEKPVLVFSLEMPAEQIMMRSLASLSRVDQTKIRTGQGLDD 284

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTP 159
               +I+  +        + ID  + LTP
Sbjct: 285 NDWAKISSTMGMLAKKPNLFIDDSSGLTP 313


>gi|325921689|ref|ZP_08183523.1| hypothetical protein XGA_2530 [Xanthomonas gardneri ATCC 19865]
 gi|325547829|gb|EGD18849.1| hypothetical protein XGA_2530 [Xanthomonas gardneri ATCC 19865]
          Length = 217

 Score = 36.4 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 2/103 (1%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPE-SSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107
           S+G   LD  L  GG+P+  + E+  P    G+  L L T+A+          V      
Sbjct: 44  STGHAALDALLPDGGWPRRALTELLLPAHGVGEIALLLPTLARMTGASSRVVLVAPPFIP 103

Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
            +   +  GV L++L + Q    + AL   +  +RSGA   ++
Sbjct: 104 YAPAWQAGGVVLEHLEVVQAYPRD-ALWAFEQCLRSGACAAVL 145


>gi|238761918|ref|ZP_04622892.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia
           kristensenii ATCC 33638]
 gi|238700032|gb|EEP92775.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia
           kristensenii ATCC 33638]
          Length = 548

 Score = 36.4 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 3/113 (2%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG +    E +   S G   L   L     PKG IV I GP  +GK+TL      Q Q 
Sbjct: 311 RLGDKVLEVEHLSK-SYGDRVLIDDLTFA-LPKGAIVGIIGPNGAGKSTLFRMLSGQEQP 368

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
             GT +  D          R   +D    +  +   G+  ++I +  + S A 
Sbjct: 369 DSGTISLGDTVQLASVDQFRD-NMDGSKTVWEEVSGGQDIMKIGNFEIPSRAY 420


>gi|226329252|ref|ZP_03804770.1| hypothetical protein PROPEN_03155 [Proteus penneri ATCC 35198]
 gi|225202438|gb|EEG84792.1| hypothetical protein PROPEN_03155 [Proteus penneri ATCC 35198]
          Length = 548

 Score = 36.4 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 41/113 (36%), Gaps = 3/113 (2%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG +      +   S G   L   L     PKG IV I GP  +GK+TL      Q Q 
Sbjct: 311 RLGDKVLEINNL-TKSYGDRVLIDDLSFS-IPKGAIVGIIGPNGAGKSTLFRMISGQEQP 368

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
             GT    D          R   +D    +  +   G+  + I +  + S A 
Sbjct: 369 DSGTLVLGDTVKLASVDQFRD-SMDDSKTVWEEVSGGQDIMRIGNFEIPSRAY 420


>gi|182420181|ref|ZP_02951412.1| replicative DNA helicase [Clostridium butyricum 5521]
 gi|237667246|ref|ZP_04527230.1| replicative DNA helicase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182375983|gb|EDT73573.1| replicative DNA helicase [Clostridium butyricum 5521]
 gi|237655594|gb|EEP53150.1| replicative DNA helicase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 493

 Score = 36.4 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 58/147 (39%), Gaps = 11/147 (7%)

Query: 23  IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82
           +++ +     ++L  +     G+  +S+G  G+D     GG   G  V +    S GKT 
Sbjct: 161 LEKAF-----VKLEKRCKNGGGLVGISTGFKGIDDI--TGGLKPGEFVIVAARPSMGKTA 213

Query: 83  LALHTIAQSQKTGGTCAF---VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139
            AL+    + +T     F   ++ E  L+ + +    + + ++  S   T +Q + I   
Sbjct: 214 FALNIAQSASRTSSVIIFSLEMETESLLNRMISSSCMIKMNDI-QSGTLTDDQFVRIMKR 272

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGD 166
               G  ++ + D    L+    +   
Sbjct: 273 TSELGKRNLYIDDKSTMLSDIKALCRK 299


>gi|56414528|ref|YP_151603.1| DNA replication (helicase) [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197363459|ref|YP_002143096.1| DNA replication [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56128785|gb|AAV78291.1| DNA replication (helicase) [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197094936|emb|CAR60473.1| DNA replication (helicase) [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 478

 Score = 36.4 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 18/114 (15%)

Query: 4   RKEMNIVDKSKALEAALSQIQ-----------RVYGKGAIMQ-----LGSQGSIFEGIEV 47
           R  M    K +A++A  +Q+            R +G+  +M+     L  +         
Sbjct: 133 RNGMTATQKYEAIQAIFTQLTDHAKTGSRRGLRSFGE--VMEDWVGNLEKRFDPSGEQRG 190

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           +S+G   LD  L   G  KG +  I      GKTTL               A +
Sbjct: 191 MSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKKPALM 244


>gi|238786642|ref|ZP_04630443.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia
           frederiksenii ATCC 33641]
 gi|238725010|gb|EEQ16649.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia
           frederiksenii ATCC 33641]
          Length = 548

 Score = 36.4 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 3/113 (2%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG +    E +   S G   L   L     PKG IV I GP  +GK+TL      Q Q 
Sbjct: 311 RLGDKVLEVEHLSK-SYGDRVLIDDLTFA-LPKGAIVGIIGPNGAGKSTLFRMLSGQEQP 368

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
             GT +  D    L S+   +  +D    +  +   G+  ++I +  + S A 
Sbjct: 369 DSGTISLGDT-VLLASVDQFRDNMDDSKTVWEEVSGGQDIMKIGNFEIPSRAY 420


>gi|261867672|ref|YP_003255594.1| replicative DNA helicase [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261413004|gb|ACX82375.1| replicative DNA helicase [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 468

 Score = 36.4 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 53/149 (35%), Gaps = 17/149 (11%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LE  +S+I+++          SQ     G+  VS+G   LD      G  K  ++ +   
Sbjct: 179 LENTISKIEQL----------SQAKDHSGVTGVSTGFKDLDKK--TAGLQKSDLIIVAAR 226

Query: 76  ESSGKTTLALHTIAQSQ-KTGGTCAFVDAEHALDSIYARKLGV----DLKNLLISQPDTG 130
            S GKTT A++    +   +         E   + I  R L      D   +   Q    
Sbjct: 227 PSMGKTTFAMNLCENAALGSEKPVLVFSLEMPAEQIMMRSLASLSRVDQTKIRTGQGLDD 286

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTP 159
               +I+  +        + ID  + LTP
Sbjct: 287 NDWAKISSTMGVLAKKPNLFIDDSSGLTP 315


>gi|302419683|ref|XP_003007672.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
 gi|261353323|gb|EEY15751.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
          Length = 345

 Score = 36.4 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + +G   +D    +GG  +G +  I   + S    LA   +A+S   GG  A +
Sbjct: 40  AIVTGCREVDEGALLGGLERGCVTGISAEDESFGMRLAFQAVARSLVEGGQRAVI 94


>gi|121605290|ref|YP_982619.1| replicative DNA helicase [Polaromonas naphthalenivorans CJ2]
 gi|120594259|gb|ABM37698.1| primary replicative DNA helicase [Polaromonas naphthalenivorans
           CJ2]
          Length = 469

 Score = 36.4 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 57/189 (30%), Gaps = 16/189 (8%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ- 92
           ++         +  V +G + LD      GF  G ++ +    S GKT LA++       
Sbjct: 190 RVTEMSENPNDVTGVPTGFVDLDRM--TSGFQAGDLIILAARPSMGKTALAINIAEHVAL 247

Query: 93  KTGGTCAFVDAEHALDSIYARKLGV--DLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150
             G   A    E     +  R +G    +    +      ++        +       + 
Sbjct: 248 HEGLPVAVFSMEMGASQLAVRIVGSIGRIDQTHLRTGALTDEEWPRLTEAIEKLRTISLH 307

Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210
           ID  A LT           S     AR +++   KL   I      L+ ++         
Sbjct: 308 IDETAGLTV----------SELRANARRLARQCGKL-GLIVVDYLQLMSVSTSMSDENRA 356

Query: 211 FGSPETTTG 219
               E + G
Sbjct: 357 TAVGEISRG 365


>gi|163743658|ref|ZP_02151033.1| ABC transporter, ATP-binding protein [Phaeobacter gallaeciensis
           2.10]
 gi|161383025|gb|EDQ07419.1| ABC transporter, ATP-binding protein [Phaeobacter gallaeciensis
           2.10]
          Length = 555

 Score = 36.4 bits (82), Expect = 7.5,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 43/114 (37%), Gaps = 3/114 (2%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LGS+    EGI     G   L   L     P G IV + GP  +GK+TL      Q Q 
Sbjct: 318 RLGSKVIEVEGISKH-YGDKQLVEGLSF-DLPPGGIVGVIGPNGAGKSTLFRMLTGQEQP 375

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
             G  ++ D           +  +D    +      G + +E+ D  V S A  
Sbjct: 376 DEGNVSYGDTVKLSYVD-QSRDDLDDNETVWEAISGGAEIIELGDAQVNSRAYC 428


>gi|123440950|ref|YP_001004939.1| putative ABC transporter ATP-binding protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|332160219|ref|YP_004296796.1| putative ABC transporter ATP-binding protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|122087911|emb|CAL10699.1| ABC transporter protein, ATP-binding component [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|318607215|emb|CBY28713.1| ABC transporter, ATP-binding protein [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325664449|gb|ADZ41093.1| putative ABC transporter ATP-binding protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 548

 Score = 36.4 bits (82), Expect = 7.5,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 3/113 (2%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG +    E +   S G   L   L     PKG IV I GP  +GK+TL      Q Q 
Sbjct: 311 RLGDKVLEVEHLSK-SYGDRVLIDDLTFA-LPKGAIVGIIGPNGAGKSTLFRMLSGQEQP 368

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
             GT +  D    L S+   +  +D    +  +   G+  ++I +  + S A 
Sbjct: 369 DSGTISLGDT-VLLASVDQFRDNMDDSKTVWEEVSGGQDIMKIGNFEIPSRAY 420


>gi|212640660|ref|YP_002317180.1| replicative DNA helicase [Anoxybacillus flavithermus WK1]
 gi|212562140|gb|ACJ35195.1| Replicative DNA helicase [Anoxybacillus flavithermus WK1]
          Length = 456

 Score = 36.4 bits (82), Expect = 7.5,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 3/73 (4%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-GGTCAFVD 102
            I  + +G + LD      GF +   + +    S GKT  AL+         G   A   
Sbjct: 184 EITGIPTGFIELDRM--TAGFQRSDFIIVAARPSVGKTAFALNIAQNVATRTGENVAIFS 241

Query: 103 AEHALDSIYARKL 115
            E     +  R L
Sbjct: 242 LEMGAQQLVMRML 254


>gi|34762901|ref|ZP_00143883.1| Replicative DNA helicase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27887428|gb|EAA24516.1| Replicative DNA helicase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 446

 Score = 36.4 bits (82), Expect = 7.6,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 2/87 (2%)

Query: 32  IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
           IM++            + +G + LD      G     ++ +    + GKT  AL+    +
Sbjct: 169 IMRMERVSENRGKTLGIPTGFIDLDRM--TSGLNNSDLIILAARPAMGKTAFALNVALNA 226

Query: 92  QKTGGTCAFVDAEHALDSIYARKLGVD 118
            K          E  +  +Y R L ++
Sbjct: 227 GKEKKNVLVFSLEMPVQQLYQRLLSIE 253


>gi|168178995|ref|ZP_02613659.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum NCTC
           2916]
 gi|226950776|ref|YP_002805867.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A2 str.
           Kyoto]
 gi|182670026|gb|EDT82002.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum NCTC
           2916]
 gi|226844301|gb|ACO86967.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A2 str.
           Kyoto]
          Length = 658

 Score = 36.4 bits (82), Expect = 7.7,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%)

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           E +K  L+EN E+   I   L +   L+ D  +       + + +K + D  E
Sbjct: 566 EKAKRMLKENEELLNKITEKLLEKETLMGDEFMAIIKGEDETELNKTEIDEKE 618


>gi|9633423|ref|NP_050526.1| similar to P protein of bacteriophage HK022 [Enterobacteria phage
           VT2-Sakai]
 gi|15830444|ref|NP_309217.1| replication protein P [Escherichia coli O157:H7 str. Sakai]
 gi|5881619|dbj|BAA84310.1| P [Enterobacteria phage VT2-Sakai]
 gi|13360650|dbj|BAB34613.1| replication protein P [Escherichia coli O157:H7 str. Sakai]
 gi|32128139|dbj|BAC77943.1| P protein [Stx1 converting phage]
 gi|32128306|dbj|BAC78109.1| P protein [Stx2 converting phage II]
          Length = 483

 Score = 36.4 bits (82), Expect = 7.7,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 18/114 (15%)

Query: 4   RKEMNIVDKSKALEAALSQIQ-----------RVYGKGAIMQ-----LGSQGSIFEGIEV 47
           R  M    K +A++A  +Q+            R +G+  +M+     L  +         
Sbjct: 138 RNGMTATQKYEAIQAIFTQLTDHAKTGSRRGLRSFGE--VMEDWVSDLEKRFDPSGEQRG 195

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           +S+G   LD  L   G  KG +  I      GKTTL               A +
Sbjct: 196 MSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKKPALM 249


>gi|238918568|ref|YP_002932082.1| putative ABC transporter ATP-binding protein [Edwardsiella ictaluri
           93-146]
 gi|238868136|gb|ACR67847.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 555

 Score = 36.4 bits (82), Expect = 7.8,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 3/113 (2%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG +      +   S G   L  AL     PKG IV I GP  +GK+TL      Q Q 
Sbjct: 318 RLGDKVLEVSNLSK-SYGDRLLIDALSFS-IPKGAIVGIIGPNGAGKSTLFRMISGQEQP 375

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
             G+    D    L S+   +  +D K  +  +   G+  + I +  + S A 
Sbjct: 376 DSGSITLGDT-VTLASVDQFRDAMDDKKSVWEEVSGGQDIMRIGNFEIASRAY 427


>gi|327400649|ref|YP_004341488.1| putative circadian clock protein KaiC [Archaeoglobus veneficus
           SNP6]
 gi|327316157|gb|AEA46773.1| putative circadian clock protein, KaiC [Archaeoglobus veneficus
           SNP6]
          Length = 295

 Score = 36.4 bits (82), Expect = 7.9,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 45/139 (32%), Gaps = 20/139 (14%)

Query: 61  IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA------RK 114
           +GG P   I+ + G   SGK+ LA          G    FV  E   + +Y         
Sbjct: 45  LGGLPYLSIMNLTGVPDSGKSVLAEQFAVTQANAGYRVLFVTVESPANFLYTALKHKSEA 104

Query: 115 LGVDLKNLLISQP-----------DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163
           +G D   +  +             +  +  L+     +R   V  ++IDS+  L    E 
Sbjct: 105 MGADFSKVEENIVVIDASESDELRENPKALLDTMAYAIREKKVTNVIIDSITGLYEHKE- 163

Query: 164 EGDMGESLPGMQARLMSQA 182
              M   +       + + 
Sbjct: 164 --MMARQIVRQFFNFLKKW 180


>gi|254780332|ref|YP_003064745.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040009|gb|ACT56805.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 504

 Score = 36.4 bits (82), Expect = 7.9,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 49/150 (32%), Gaps = 25/150 (16%)

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------------- 94
           VS+G   LD  +  GG  +  ++ I G    GKT+LA +                     
Sbjct: 202 VSTGIQTLDKQM--GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKT 259

Query: 95  --GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152
             GG   F   E + + +  R +    +      P +  +  E+T          +    
Sbjct: 260 INGGIVGFYSLEMSSEQLATRIISEQTE-----VPSSKIRRGELTR---PDYEKIVACSQ 311

Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQA 182
            +  L    +  G +  S    +AR + + 
Sbjct: 312 VMQKLPLYIDQTGGISMSQLATRARRLKRQ 341


>gi|14590456|ref|NP_142524.1| flagellar accessory protein FlaH [Pyrococcus horikoshii OT3]
 gi|3256962|dbj|BAA29645.1| 232aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 232

 Score = 36.4 bits (82), Expect = 7.9,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 56/151 (37%), Gaps = 16/151 (10%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
            L   LG GG P G I+ I G   +GK+ ++   +      G T +++ +++       +
Sbjct: 14  ELHRRLG-GGIPAGTIMLIEGDRGTGKSIISQRLLYGFLMNGYTSSYISSQYTTVEYIKQ 72

Query: 114 KLGVDLKNLLI---------------SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158
            + +    +                 S      + L       R    D+I+IDS +++ 
Sbjct: 73  MMSISYDVIPFLIRKKLVFVSLYPLLSGVSEERKFLSRLLGEPRLWDQDVIIIDSFSSVL 132

Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSS 189
            R +  G +   L  ++       +  LT++
Sbjct: 133 SREQDVGAVRNFLMYIKRLSSLGKVIILTAN 163


>gi|300087742|ref|YP_003758264.1| replicative DNA helicase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527475|gb|ADJ25943.1| replicative DNA helicase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 452

 Score = 36.4 bits (82), Expect = 7.9,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 29  KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88
           K  + +        E +E V +G  GL+    IGG  +G +V + G    GKT+  L+  
Sbjct: 160 KNILSRYLEPPPDREQLETVPTGFHGLNDY--IGGMKRGDLVIVAGRPGMGKTSFGLNIG 217

Query: 89  AQ 90
             
Sbjct: 218 RN 219


>gi|260868705|ref|YP_003235107.1| putative replication protein [Escherichia coli O111:H- str. 11128]
 gi|257765061|dbj|BAI36556.1| putative replication protein [Escherichia coli O111:H- str. 11128]
 gi|323177110|gb|EFZ62700.1| dnaB-like helicase N terminal domain protein [Escherichia coli
           1180]
          Length = 478

 Score = 36.4 bits (82), Expect = 7.9,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 18/114 (15%)

Query: 4   RKEMNIVDKSKALEAALSQIQ-----------RVYGKGAIMQ-----LGSQGSIFEGIEV 47
           R  M    K +A++A  +Q+            R +G+  +M+     L  +         
Sbjct: 133 RNGMTATQKYEAIQAIFTQLTDHAKTGSRRGLRSFGE--VMEDWVSDLEKRFDPSGEQRG 190

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           +S+G   LD  L   G  KG +  I      GKTTL               A +
Sbjct: 191 MSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKKPALM 244


>gi|13559848|ref|NP_112058.1| replication protein P [Enterobacteria phage HK620]
 gi|13517584|gb|AAK28873.1|AF335538_25 replication protein P [Salmonella phage HK620]
 gi|17978000|emb|CAC83139.1| putative replication protein P [Enterobacteria phage CP-1639]
 gi|323181144|gb|EFZ66675.1| dnaB-like helicase N terminal domain protein [Escherichia coli
           1180]
          Length = 478

 Score = 36.4 bits (82), Expect = 7.9,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 18/114 (15%)

Query: 4   RKEMNIVDKSKALEAALSQIQ-----------RVYGKGAIMQ-----LGSQGSIFEGIEV 47
           R  M    K +A++A  +Q+            R +G+  +M+     L  +         
Sbjct: 133 RNGMTATQKYEAIQAIFTQLTDHAKTGSRRGLRSFGE--VMEDWVSDLEKRFDPSGEQRG 190

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           +S+G   LD  L   G  KG +  I      GKTTL               A +
Sbjct: 191 MSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKKPALM 244


>gi|110804334|ref|YP_687854.1| replication protein P [Shigella flexneri 5 str. 8401]
 gi|168765004|ref|ZP_02790011.1| replicative DNA helicase homolog [Escherichia coli O157:H7 str.
           EC4501]
 gi|217328495|ref|ZP_03444577.1| replicative DNA helicase homolog [Escherichia coli O157:H7 str.
           TW14588]
 gi|302393143|ref|YP_003828973.1| DNA replication protein P [Stx2 converting phage II]
 gi|302861181|ref|YP_003848882.1| DNA replication protein P [Stx1 converting phage]
 gi|7649849|dbj|BAA94127.1| P protein [Enterobacteria phage VT2-Sakai]
 gi|110613882|gb|ABF02549.1| replication protein P [Shigella flexneri 5 str. 8401]
 gi|189365105|gb|EDU83521.1| replicative DNA helicase homolog [Escherichia coli O157:H7 str.
           EC4501]
 gi|217318922|gb|EEC27348.1| replicative DNA helicase homolog [Escherichia coli O157:H7 str.
           TW14588]
 gi|326347832|gb|EGD71548.1| replication protein P [Escherichia coli O157:H7 str. 1044]
          Length = 478

 Score = 36.4 bits (82), Expect = 7.9,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 18/114 (15%)

Query: 4   RKEMNIVDKSKALEAALSQIQ-----------RVYGKGAIMQ-----LGSQGSIFEGIEV 47
           R  M    K +A++A  +Q+            R +G+  +M+     L  +         
Sbjct: 133 RNGMTATQKYEAIQAIFTQLTDHAKTGSRRGLRSFGE--VMEDWVSDLEKRFDPSGEQRG 190

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           +S+G   LD  L   G  KG +  I      GKTTL               A +
Sbjct: 191 MSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKKPALM 244


>gi|323190858|gb|EFZ76125.1| dnaB-like helicase N terminal domain protein [Escherichia coli
           RN587/1]
          Length = 478

 Score = 36.4 bits (82), Expect = 8.0,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 18/114 (15%)

Query: 4   RKEMNIVDKSKALEAALSQIQ-----------RVYGKGAIMQ-----LGSQGSIFEGIEV 47
           R  M    K +A++A  +Q+            R +G+  +M+     L  +         
Sbjct: 133 RNGMTATQKYEAIQAIFTQLTDHAKTGSRRGLRSFGE--VMEDWVSDLEKRFDPSGEQRG 190

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           +S+G   LD  L   G  KG +  I      GKTTL               A +
Sbjct: 191 MSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKKPALM 244


>gi|116222060|ref|YP_794115.1| replication protein P [Stx2-converting phage 86]
 gi|115500870|dbj|BAF34100.1| replication protein P [Stx2-converting phage 86]
          Length = 483

 Score = 36.4 bits (82), Expect = 8.0,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 18/114 (15%)

Query: 4   RKEMNIVDKSKALEAALSQIQ-----------RVYGKGAIMQ-----LGSQGSIFEGIEV 47
           R  M    K +A++A  +Q+            R +G+  +M+     L  +         
Sbjct: 138 RNGMTATQKYEAIQAIFTQLTDHAKTGSRRGLRSFGE--VMEDWVSDLEKRFDPSGEQRG 195

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           +S+G   LD  L   G  KG +  I      GKTTL               A +
Sbjct: 196 MSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKKPALM 249


>gi|163736836|ref|ZP_02144254.1| ABC transporter related protein [Phaeobacter gallaeciensis BS107]
 gi|161389440|gb|EDQ13791.1| ABC transporter related protein [Phaeobacter gallaeciensis BS107]
          Length = 555

 Score = 36.4 bits (82), Expect = 8.1,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 3/114 (2%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LGS+    EGI     G   L   L     P G IV + GP  +GK+TL      Q Q 
Sbjct: 318 RLGSKVIEVEGISKH-YGDKQLVEGLSF-DLPPGGIVGVIGPNGAGKSTLFRMLTGQEQP 375

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147
             G  ++ D         +R    D + +  +    G + +E+ D  V S A  
Sbjct: 376 DEGNVSYGDTVKLSYVDQSRDDLNDNETVWEA-ISGGAEIIELGDAQVNSRAYC 428


>gi|324117740|gb|EGC11639.1| DnaB family protein phage replicative helicase [Escherichia coli
           E1167]
          Length = 478

 Score = 36.4 bits (82), Expect = 8.1,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 18/114 (15%)

Query: 4   RKEMNIVDKSKALEAALSQIQ-----------RVYGKGAIMQ-----LGSQGSIFEGIEV 47
           R  M    K +A++A  +Q+            R +G+  +M+     L  +         
Sbjct: 133 RNGMTATQKYEAIQAIFTQLTDHAKTGSRRGLRSFGE--VMEDWVSDLEKRFDPSGEQRG 190

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           +S+G   LD  L   G  KG +  I      GKTTL               A +
Sbjct: 191 MSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKKPALM 244


>gi|325969794|ref|YP_004245986.1| circadian clock protein, KaiC [Vulcanisaeta moutnovskia 768-28]
 gi|323708997|gb|ADY02484.1| putative circadian clock protein, KaiC [Vulcanisaeta moutnovskia
           768-28]
          Length = 289

 Score = 36.4 bits (82), Expect = 8.1,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 2/82 (2%)

Query: 41  IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100
           +   I  +S G   LD A+ +GG P+G  + I G    GK+ L +     +         
Sbjct: 1   MSSTIRRISLGVDWLDYAM-LGGVPRGNWLLITGEPGVGKSILTIQAAGANVDAMPVVYV 59

Query: 101 VDAEHALDSIYA-RKLGVDLKN 121
                  D +   ++  +DL +
Sbjct: 60  STETKFFDVVRQAKQFNIDLSD 81


>gi|170761395|ref|YP_001788658.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169408384|gb|ACA56795.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 658

 Score = 36.4 bits (82), Expect = 8.1,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363
           E +K  L+EN E+   I   L +   L+ D  +       + + ++ + D  E
Sbjct: 566 EKAKRMLKENEELLNKITEKLLEKETLMGDEFMAMIKGEDESELNEIEIDEKE 618


>gi|172061787|ref|YP_001809439.1| hypothetical protein BamMC406_2746 [Burkholderia ambifaria MC40-6]
 gi|171994304|gb|ACB65223.1| conserved hypothetical protein [Burkholderia ambifaria MC40-6]
          Length = 235

 Score = 36.4 bits (82), Expect = 8.1,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 1/106 (0%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVE-IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
            + +G   L   L  GG+P G +VE +      G+  L    +A++       A V   H
Sbjct: 28  TIDTGFAPLSAELPGGGWPVGGLVELLAAQPGCGEMRLLAPALARTVSARRPLALVAPPH 87

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           +  +     LGV    LL  +  +   AL   +  +++G    +++
Sbjct: 88  SPHASALAGLGVPSDALLWLRAGSRTDALWAAEQALKTGCCGALLL 133


>gi|157159747|ref|YP_001457065.1| replicative DNA helicase-like protein [Escherichia coli HS]
 gi|157065427|gb|ABV04682.1| replicative DNA helicase homolog [Escherichia coli HS]
          Length = 478

 Score = 36.4 bits (82), Expect = 8.1,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 18/114 (15%)

Query: 4   RKEMNIVDKSKALEAALSQIQ-----------RVYGKGAIMQ-----LGSQGSIFEGIEV 47
           R  M    K +A++A  +Q+            R +G+  +M+     L  +         
Sbjct: 133 RNGMTATQKYEAIQAIFTQLTDHAKTGSRRGLRSFGE--VMEDWVSDLEKRFDPSGEQRG 190

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           +S+G   LD  L   G  KG +  I      GKTTL               A +
Sbjct: 191 MSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKKPALM 244


>gi|115352939|ref|YP_774778.1| hypothetical protein Bamb_2888 [Burkholderia ambifaria AMMD]
 gi|115282927|gb|ABI88444.1| conserved hypothetical protein [Burkholderia ambifaria AMMD]
          Length = 235

 Score = 36.4 bits (82), Expect = 8.1,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 1/106 (0%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVE-IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105
            + +G   L   L  GG+P G +VE +      G+  L    +A++       A V   H
Sbjct: 28  TIDTGFAPLSAELPGGGWPVGGLVELLAAQPGCGEMRLLAPALARTVSARRPLALVAPPH 87

Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151
           +  +     LGV    LL  +  +   AL   +  +++G    +++
Sbjct: 88  SPHASALAGLGVPSDALLWLRAGSRTDALWAAEQALKTGCCGALLL 133


>gi|309792702|ref|ZP_07687153.1| replicative DNA helicase [Oscillochloris trichoides DG6]
 gi|308225251|gb|EFO79028.1| replicative DNA helicase [Oscillochloris trichoides DG6]
          Length = 443

 Score = 36.4 bits (82), Expect = 8.2,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 74/223 (33%), Gaps = 23/223 (10%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-----SQK 93
                 +  V +G   LD     GG     ++ +    S GKT+LAL          +Q 
Sbjct: 172 QERRGEVVGVPTGYTDLDEL--TGGLQPSDLIILAARPSVGKTSLALSLAYNVAYQANQT 229

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII---- 149
            G     +  +  +  + +   G+D++ L        E  L +  M V S     I    
Sbjct: 230 VGVFSLEMSRDQLVQRMLSMHTGIDMQRLRTGNLRGDELNLALEGMGVLSEIPIYIEDTP 289

Query: 150 ------VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203
                 V      L   A ++  M + L  M  R     +++++      K +   IN  
Sbjct: 290 GLSINEVRSKARRLHAEAGVDLIMIDYLQLMSGRRSDNRVQEVSEISRGLKALAREINVP 349

Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246
            + +  +  + E  T    +        D+R  GSI+    I 
Sbjct: 350 VIALSQLSRAVEGRTSHVPMLS------DLRESGSIEQDADIV 386


>gi|323180453|gb|EFZ66002.1| dnaB-like helicase N terminal domain protein [Escherichia coli
           1180]
          Length = 478

 Score = 36.0 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 18/114 (15%)

Query: 4   RKEMNIVDKSKALEAALSQIQ-----------RVYGKGAIMQ-----LGSQGSIFEGIEV 47
           R  M    K +A++A  +Q+            R +G+  +M+     L  +         
Sbjct: 133 RNGMTATQKYEAIQAIFTQLTDHAKTGSRRGLRSFGE--VMEDWVSDLEKRFDPSGEQRG 190

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           +S+G   LD  L   G  KG +  I      GKTTL               A +
Sbjct: 191 MSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKKPALM 244


>gi|124003909|ref|ZP_01688756.1| DNA repair protein RadA [Microscilla marina ATCC 23134]
 gi|123990488|gb|EAY29968.1| DNA repair protein RadA [Microscilla marina ATCC 23134]
          Length = 464

 Score = 36.0 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 4/121 (3%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           F   E V +    L+  LG GG   G +V I G    GK+TL L       +        
Sbjct: 68  FSAQERVITPDEELNRVLG-GGIVPGSLVLIGGEPGIGKSTLMLQIALTMHQMKVLYVSG 126

Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTG---EQALEITDMLVRSGAVDIIVIDSVAALT 158
           +       + A ++    + L+ S+ +     E + +     +   A  I+VIDS+  L 
Sbjct: 127 EESEQQIKMRADRITQQNEGLVASRENCYILTETSTQNIFKQIEEFAPQILVIDSIQTLH 186

Query: 159 P 159
            
Sbjct: 187 S 187


>gi|159905383|ref|YP_001549045.1| flagellar accessory protein FlaH [Methanococcus maripaludis C6]
 gi|159886876|gb|ABX01813.1| AAA ATPase [Methanococcus maripaludis C6]
          Length = 230

 Score = 36.0 bits (81), Expect = 8.5,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 64/194 (32%), Gaps = 17/194 (8%)

Query: 62  GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK- 120
           GG P G I+ I G ESSGK+ L         +   + ++V  +        + + +    
Sbjct: 19  GGIPFGSIILIEGEESSGKSILCQRLAYGFLQNSYSLSYVSTQMTTTEFVKQMMSLKYNI 78

Query: 121 -------NLLISQPDTGEQALEITDMLVRS-------GAVDIIVIDSVAALTPRAEIEGD 166
                  NLL            I +  ++           DI++ DS++ L      E  
Sbjct: 79  NKKLLNGNLLYIPVYPLISENAIKEDFIKKVMNTRAFYEKDIVLFDSISTLVSNDASEVQ 138

Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226
           + + +   +       +   T +       ++ I +    I  +  +   + GGN     
Sbjct: 139 ITDLMAFFKRIASMNKIIIYTVNPKELPESVLTILRTSATI--VIKTETYSFGGNLKNSA 196

Query: 227 SSVRLDIRRVGSIK 240
             V+ +  R    K
Sbjct: 197 KIVKYNFARSSFQK 210


>gi|108809829|ref|YP_653745.1| ATPase [Yersinia pestis Antiqua]
 gi|167400607|ref|ZP_02306116.1| ATPase [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|108781742|gb|ABG15800.1| ATPase [Yersinia pestis Antiqua]
 gi|167049975|gb|EDR61383.1| ATPase [Yersinia pestis biovar Antiqua str. UG05-0454]
          Length = 278

 Score = 36.0 bits (81), Expect = 8.6,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 3/113 (2%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG +    E +   S G   L   L     PKG IV I GP  +GK+TL      Q Q 
Sbjct: 41  RLGDKVLEVEHLSK-SYGDRLLIDDLTFA-LPKGAIVGIIGPNGAGKSTLFRMLSGQEQP 98

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
             GT +  D          R   +D    +  +   G+  ++I +  + S A 
Sbjct: 99  DSGTISLGDTVQLASVDQFRD-NMDDSKTVWEEVSGGQDIMKIGNFELPSRAY 150


>gi|20092768|ref|NP_618843.1| hypothetical protein MA3974 [Methanosarcina acetivorans C2A]
 gi|19918063|gb|AAM07323.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 232

 Score = 36.0 bits (81), Expect = 8.6,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 45  IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104
           ++ +SSG   LD  +G GG+  GR++ I G   +GKTT  +H + ++      C  V  E
Sbjct: 1   MKRISSGIPELDERIG-GGYIAGRVLLITGDTGTGKTTFTIHFLHRACLEDKKCVLVATE 59

Query: 105 H 105
            
Sbjct: 60  E 60


>gi|73748381|ref|YP_307620.1| replicative DNA helicase [Dehalococcoides sp. CBDB1]
 gi|147669161|ref|YP_001213979.1| primary replicative DNA helicase [Dehalococcoides sp. BAV1]
 gi|289432429|ref|YP_003462302.1| replicative DNA helicase [Dehalococcoides sp. GT]
 gi|73660097|emb|CAI82704.1| replicative DNA helicase [Dehalococcoides sp. CBDB1]
 gi|146270109|gb|ABQ17101.1| primary replicative DNA helicase [Dehalococcoides sp. BAV1]
 gi|288946149|gb|ADC73846.1| replicative DNA helicase [Dehalococcoides sp. GT]
          Length = 458

 Score = 36.0 bits (81), Expect = 8.6,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 51/116 (43%), Gaps = 7/116 (6%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
              ++ I  V +G  G+D  L  GG  +  ++ + G  S GKT+LAL+    +      C
Sbjct: 175 SEGYQAIPHVLTGLTGMDTFL--GGLQRSDLIIMAGRPSMGKTSLALNIARNAAVEQRAC 232

Query: 99  AF-----VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
                  +  E  +  + + +  V+ +++ +++ +  E+   +  + V S A   I
Sbjct: 233 TAIFSLEMSRESLVQRLLSNEAAVNSRSIRLNESNPDEERKIMDAIGVLSEAPIFI 288


>gi|119774118|ref|YP_926858.1| DNA repair protein RadA [Shewanella amazonensis SB2B]
 gi|119766618|gb|ABL99188.1| DNA repair protein [Shewanella amazonensis SB2B]
          Length = 454

 Score = 36.0 bits (81), Expect = 8.6,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 57/158 (36%), Gaps = 9/158 (5%)

Query: 42  FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
              +  + S     D  LG GG   G  + I G   +GK+TL L T+ Q  +      +V
Sbjct: 68  LNELPRIPSSFTEFDRVLG-GGIVPGSAILIGGHPGAGKSTLLLQTLCQLAEV-MPALYV 125

Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
             E +L  +  R  +LG+    L +    + E   +I           +IV+DS+  +  
Sbjct: 126 TGEESLQQVAMRAHRLGLPTSKLKMLSETSVETLCDIALK----EQPKLIVVDSIQVMH- 180

Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197
            ++++   G      ++        K           +
Sbjct: 181 MSDVQSSPGSVAQVRESASFLTRFAKQNGIAVIMVGHV 218


>gi|325188579|emb|CCA23112.1| DNA repair protein RAD51 putative [Albugo laibachii Nc14]
          Length = 343

 Score = 36.0 bits (81), Expect = 8.7,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 60/194 (30%), Gaps = 26/194 (13%)

Query: 66  KGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFVDAEHALDSIYARKLGVDL---KN 121
           +G ++EI G    GKT  A+H    S     G   ++D+E +       ++         
Sbjct: 106 RGEVMEICGGPGLGKTQFAIHVCLASSVPFKGRSIYIDSEGSFVIERVAQMAAHFVEDYK 165

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDII--VIDSVAALTPRAEIEGDMGESLPG------ 173
           L   +  T +  L           V+ +  +      L    +I   + +SL        
Sbjct: 166 LPGEEISTRDDILRSIHYYRVHDYVEQMQVIQSLFNVLRQDPKICTLVIDSLAFHLRHSF 225

Query: 174 ----MQARLMSQALRKLTSSISRSKCILVFINQMRMK----------IGVMFGSPETTTG 219
                +AR    A  KL       + ++  +N M  K                  E    
Sbjct: 226 EDTGARARATESAAIKLHELAREFRIVVFIVNYMTTKYHGDHRLPSAPFDTMNGLEIPAL 285

Query: 220 GNALKFYSSVRLDI 233
           G++     + RL +
Sbjct: 286 GDSWSHAIATRLYL 299


>gi|157738148|ref|YP_001490832.1| flagellum-specific ATP synthase [Arcobacter butzleri RM4018]
 gi|315636291|ref|ZP_07891541.1| flagellum-specific ATP synthase FliI [Arcobacter butzleri JV22]
 gi|157700002|gb|ABV68162.1| flagellum-specific ATP synthase FliI [Arcobacter butzleri RM4018]
 gi|315479380|gb|EFU70063.1| flagellum-specific ATP synthase FliI [Arcobacter butzleri JV22]
          Length = 435

 Score = 36.0 bits (81), Expect = 8.7,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 57/173 (32%), Gaps = 27/173 (15%)

Query: 29  KGAIMQLGSQGSIFEGI-----------EVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77
           KG I  L  + S    I           +  S+G   +D  L  G   KG+ V I+    
Sbjct: 114 KGKIRDL-DENSAINKISMSPLERGIIDQKFSTGVKAIDSMLTCG---KGQKVGIFAGSG 169

Query: 78  SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR-KLGVDLKNLLISQPDTGEQALE- 135
            GK+TL    +   +      A V         +    L  DL+N +I    + E AL  
Sbjct: 170 VGKSTLMGMIVKGCEAQVKVVALVGERGREIPEFIHYNLNDDLENTVIVAATSDESALMR 229

Query: 136 ---------ITDMLVRSGAVDIIVIDSVAALT-PRAEIEGDMGESLPGMQARL 178
                    I +     G   ++++DSV      + EI    GE         
Sbjct: 230 KYGAFTAMSIAEYFRDKGLDVLLMMDSVTRFAMAQREIGLSTGEPPVSRGYPP 282


>gi|322418837|ref|YP_004198060.1| ABC transporter-like protein [Geobacter sp. M18]
 gi|320125224|gb|ADW12784.1| ABC transporter related protein [Geobacter sp. M18]
          Length = 311

 Score = 36.0 bits (81), Expect = 8.8,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 38/141 (26%), Gaps = 13/141 (9%)

Query: 64  FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123
            P   I  + GP  +GKTTL     A  +  GGT      +   +     +L   L +  
Sbjct: 24  LPPRSITALVGPNGAGKTTLMRCLAALEEPVGGTITIHGVDVLAEPRRCHRLVGYLSDFY 83

Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183
                       +    V               + PR E    +  +        +    
Sbjct: 84  GLYEQLSVHQCLLHAAAVN-------------GVAPRDEERTALRAAQRLGIDDRLDVQA 130

Query: 184 RKLTSSISRSKCILVFINQMR 204
           R L+  + +   I   I    
Sbjct: 131 RTLSRGLRQRLGIAQAIVHEP 151


>gi|255514213|gb|EET90475.1| putative circadian clock protein, KaiC [Candidatus Micrarchaeum
           acidiphilum ARMAN-2]
          Length = 240

 Score = 36.0 bits (81), Expect = 8.8,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102
           E +  V +   GLD  L  GG P+G  + + G   +GK+ ++   + +  K G   AF+ 
Sbjct: 4   EQLNRVKTNIDGLDDML-YGGIPEGNQIIVAGGPGTGKSLMSFEFLYRKAKEGVNSAFIA 62

Query: 103 AEH 105
            E 
Sbjct: 63  LEE 65


>gi|292669342|ref|ZP_06602768.1| DNA replication protein DnaC [Selenomonas noxia ATCC 43541]
 gi|292648977|gb|EFF66949.1| DNA replication protein DnaC [Selenomonas noxia ATCC 43541]
          Length = 440

 Score = 36.0 bits (81), Expect = 8.9,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 31  AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90
           A+ ++        GI  +S+G   LD      G  K  ++ +    + GKT   L+    
Sbjct: 166 AVERVSELAKAKGGITGLSTGLATLDNV--TRGLQKSDLIIVAARPAMGKTAFVLNLATH 223

Query: 91  SQKTGGTCAFVDAE 104
               GGT AF   E
Sbjct: 224 VALQGGTVAFFSLE 237


>gi|67515819|ref|XP_657795.1| hypothetical protein AN0191.2 [Aspergillus nidulans FGSC A4]
 gi|40746908|gb|EAA66064.1| hypothetical protein AN0191.2 [Aspergillus nidulans FGSC A4]
 gi|259489600|tpe|CBF90005.1| TPA: PAXNEB protein superfamily (AFU_orthologue; AFUA_5G11130)
          [Aspergillus nidulans FGSC A4]
          Length = 391

 Score = 36.0 bits (81), Expect = 8.9,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 36 GSQGSIFEGIEVVSSGSLGLDIAL-GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94
          G + S  +G    S+GS  LD  L G GG P G+ + +   E +G T  A   +      
Sbjct: 38 GVRPSPDDGRPTTSTGSPSLDSLLAGHGGLPIGKTLLL---EENGTTDFAGALLRYYAAE 94

Query: 95 G 95
          G
Sbjct: 95 G 95


>gi|119386910|ref|YP_917965.1| hemin importer ATP-binding subunit [Paracoccus denitrificans
           PD1222]
 gi|119377505|gb|ABL72269.1| ABC transporter related protein [Paracoccus denitrificans PD1222]
          Length = 257

 Score = 36.0 bits (81), Expect = 9.0,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 42/125 (33%), Gaps = 5/125 (4%)

Query: 67  GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV-DAEHALDSIYARKLGVDLKNLLIS 125
           G I  I GP  SGKTTL      +    G       D         A++ GV  +   +S
Sbjct: 28  GEITAIVGPNGSGKTTLMRSLTGELPSRGRIALNGRDIARMSPEELAQRRGVLPQAAALS 87

Query: 126 QPDTGEQALEITDMLVRSG----AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181
            P T  + + I                +    +   + R   E   GE      AR+++Q
Sbjct: 88  FPFTVAEVVRIGVEARGERAEALVPAALAAVDLPGFSGRLYQELSGGEQQRVQLARVLAQ 147

Query: 182 ALRKL 186
             + +
Sbjct: 148 VWQPV 152


>gi|270307905|ref|YP_003329963.1| replicative DNA helicase [Dehalococcoides sp. VS]
 gi|270153797|gb|ACZ61635.1| replicative DNA helicase [Dehalococcoides sp. VS]
          Length = 458

 Score = 36.0 bits (81), Expect = 9.1,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 51/116 (43%), Gaps = 7/116 (6%)

Query: 39  GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98
              ++ I  V +G  G+D  L  GG  +  ++ + G  S GKT+LAL+    +      C
Sbjct: 175 SEGYQAIPHVLTGLTGMDTFL--GGLQRSDLIIMAGRPSMGKTSLALNIARNAAVEQRAC 232

Query: 99  AF-----VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149
                  +  E  +  + + +  V+ +++ +++ +  E+   +  + V S A   I
Sbjct: 233 TAIFSLEMSRESLVQRLLSNEAAVNSRSIRLNESNPEEERKIMDAIGVLSEAPIFI 288


>gi|15602277|ref|NP_245349.1| replicative DNA helicase [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|20137939|sp|Q9CNL6|DNAB_PASMU RecName: Full=Replicative DNA helicase
 gi|12720663|gb|AAK02496.1| DnaB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 467

 Score = 36.0 bits (81), Expect = 9.1,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 48/149 (32%), Gaps = 17/149 (11%)

Query: 16  LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75
           LE  + +I+          L S+     GI  VS+G   LD      G     ++ +   
Sbjct: 178 LEKTIDRIE----------LLSKTEGHNGITGVSTGFDALDKK--TAGLQPSDLIIVAAR 225

Query: 76  ESSGKTTLALHTIAQSQKT-GGTCAFVDAEHALDSIYARKLGV----DLKNLLISQPDTG 130
            S GKTT A++    +             E   + I  R L      D   +   Q    
Sbjct: 226 PSMGKTTFAMNLCENAALKSDKPVLVFSLEMPAEQIMMRSLASLSRVDQTKIRTGQGLDQ 285

Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTP 159
               +I   +        + ID  + LTP
Sbjct: 286 SDWSKIGSTMGLFANKPNLYIDDSSGLTP 314


>gi|330952577|gb|EGH52837.1| replicative DNA helicase [Pseudomonas syringae Cit 7]
          Length = 449

 Score = 36.0 bits (81), Expect = 9.4,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 61/158 (38%), Gaps = 20/158 (12%)

Query: 8   NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67
           + VD +K L   + +I   +  G            E +  V +G   LD     GG    
Sbjct: 154 DFVDVNKMLLQVVDKIDLRFNAG------------ESVVGVPTGLTDLDEL--TGGLQPA 199

Query: 68  RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF------VDAEHALDSIYARKLGVDLKN 121
            ++ +    S GKT+LAL+ +  + +             + AE  +  + +    ++L+ 
Sbjct: 200 DLIIVAARPSMGKTSLALNFVDPALQKDERSTVQIYSLEMPAEALIYRLLSILGHLNLEK 259

Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
           L+  Q +  +       +   +   D +VID  A LTP
Sbjct: 260 LIRGQLEDEDWPKLAMAVAKLNSYGDRLVIDDQAGLTP 297


>gi|229847005|ref|ZP_04467111.1| replicative DNA helicase [Haemophilus influenzae 7P49H1]
 gi|229810089|gb|EEP45809.1| replicative DNA helicase [Haemophilus influenzae 7P49H1]
          Length = 451

 Score = 36.0 bits (81), Expect = 9.5,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 10/135 (7%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA--LHTIAQS 91
           ++ +     + +    +G + LD A   GG P G ++ I    + GKTT A  +      
Sbjct: 169 RMETSSINADPVSGTPTGIIELDRA-TTGGQP-GELIIIAARPAMGKTTFAQTIAASTLD 226

Query: 92  QKTGGTCAFVD----AEHALDSIYARKLGVDLKNLLISQPDTGEQ--ALEITDMLVRSGA 145
           +       F      A+  L+   A +  V L+++  +     E+   L      ++   
Sbjct: 227 KFPDSPIQFYSQEMPADQLLERFMAMRSRVSLQSIRQATELEEEEWTRLANAMGTIKKDW 286

Query: 146 VDIIVIDSVAALTPR 160
            D ++ID  A+LTP 
Sbjct: 287 KDRLLIDDEASLTPH 301


>gi|294502543|ref|YP_003566605.1| ATPase [Yersinia pestis Z176003]
 gi|262360573|gb|ACY57294.1| ATPase [Yersinia pestis D106004]
 gi|262364519|gb|ACY61076.1| ATPase [Yersinia pestis D182038]
 gi|294353002|gb|ADE63343.1| ATPase [Yersinia pestis Z176003]
          Length = 343

 Score = 36.0 bits (81), Expect = 9.5,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 3/113 (2%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93
           +LG +    E +   S G   L   L     PKG IV I GP  +GK+TL      Q Q 
Sbjct: 106 RLGDKVLEVEHLSK-SYGDRLLIDDLTFA-LPKGAIVGIIGPNGAGKSTLFRMLSGQEQP 163

Query: 94  TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146
             GT +  D          R   +D    +  +   G+  ++I +  + S A 
Sbjct: 164 DSGTISLGDTVQLASVDQFRD-NMDDSKTVWEEVSGGQDIMKIGNFELPSRAY 215


>gi|281425183|ref|ZP_06256096.1| DNA repair protein RadA [Prevotella oris F0302]
 gi|281400649|gb|EFB31480.1| DNA repair protein RadA [Prevotella oris F0302]
          Length = 460

 Score = 36.0 bits (81), Expect = 9.6,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 6/106 (5%)

Query: 54  GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113
            L+  LG GG   G IV + G    GK+TL L TI    +      +V  E +   I  R
Sbjct: 84  ELNRVLG-GGLVPGSIVLLGGEPGIGKSTLTLQTILHMNER--RILYVSGEESAHQIKMR 140

Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159
              +   + ++   +T   +LE     ++    +++VIDS+  ++ 
Sbjct: 141 AERIGGNSEVMILCET---SLESIFDNIKEVKPELVVIDSIQTIST 183


>gi|256017490|ref|ZP_05431355.1| replication protein P [Shigella sp. D9]
          Length = 334

 Score = 36.0 bits (81), Expect = 9.6,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 18/114 (15%)

Query: 4   RKEMNIVDKSKALEAALSQIQ-----------RVYGKGAIMQ-----LGSQGSIFEGIEV 47
           R  M    K +A++A  +Q+            R +G+  +M+     L  +         
Sbjct: 58  RNGMTATQKYEAIQAIFTQLTDHAKTGSRRGLRSFGE--VMEDWVSDLEKRFDPSGEQRG 115

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           +S+G   LD  L   G  KG +  I      GKTTL               A +
Sbjct: 116 MSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKKPALM 169


>gi|47459006|ref|YP_015868.1| replicative DNA helicase [Mycoplasma mobile 163K]
 gi|47458334|gb|AAT27657.1| replicative DNA helicase [Mycoplasma mobile 163K]
          Length = 452

 Score = 36.0 bits (81), Expect = 9.6,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 15/84 (17%)

Query: 17  EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76
           E A+ +I++              +  + I  +SSG   LD      GF KG +V +    
Sbjct: 160 EEAIKEIEK-------------RATSKEINGISSGYPLLDKL--TNGFQKGDLVILAARP 204

Query: 77  SSGKTTLALHTIAQSQKTGGTCAF 100
           S GKT  AL+   +  K      F
Sbjct: 205 SMGKTAFALNLATEISKKKNVAFF 228


>gi|68248638|ref|YP_247750.1| replicative DNA helicase [Haemophilus influenzae 86-028NP]
 gi|68056837|gb|AAX87090.1| replicative DNA helicase [Haemophilus influenzae 86-028NP]
 gi|301168681|emb|CBW28272.1| replicative dna helicase (ec 3.6.1.-) [Haemophilus influenzae
           10810]
 gi|309750592|gb|ADO80576.1| probable DNA helicase [Haemophilus influenzae R2866]
          Length = 451

 Score = 36.0 bits (81), Expect = 9.7,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 10/135 (7%)

Query: 34  QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA--LHTIAQS 91
           ++ +     + +    +G + LD A   GG P G ++ I    + GKTT A  +      
Sbjct: 169 RMETSSINADPVSGTPTGIIELDRA-TTGGQP-GELIIIAARPAMGKTTFAQTIAASTLD 226

Query: 92  QKTGGTCAFVD----AEHALDSIYARKLGVDLKNLLISQPDTGEQ--ALEITDMLVRSGA 145
           +       F      A+  L+   A +  V L+++  +     E+   L      ++   
Sbjct: 227 KFPDSPIQFYSQEMPADQLLERFMAMRSRVSLQSIRQATELEEEEWTRLANAMGTIKKDW 286

Query: 146 VDIIVIDSVAALTPR 160
            D ++ID  A+LTP 
Sbjct: 287 KDRLLIDDEASLTPH 301


>gi|322368495|ref|ZP_08043064.1| putative circadian clock protein, KaiC [Haladaptatus
           paucihalophilus DX253]
 gi|320552511|gb|EFW94156.1| putative circadian clock protein, KaiC [Haladaptatus
           paucihalophilus DX253]
          Length = 364

 Score = 36.0 bits (81), Expect = 9.8,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 44  GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103
            I  +  G  GLD  +  GG P+  ++   G   +GKTT  L  +  +   G    +V  
Sbjct: 132 AIPRIDIGIDGLDSMI-HGGVPERTLMVAIGNAGTGKTTFGLQFLNHALSNGEKAVYVTL 190

Query: 104 EHA 106
           E +
Sbjct: 191 EES 193


>gi|322433252|ref|YP_004210473.1| RecA domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321165644|gb|ADW71346.1| RecA domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 375

 Score = 36.0 bits (81), Expect = 9.8,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 2/88 (2%)

Query: 49  SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108
           SSG L +D  LG G  P G + E  G  SSG+T+LA   +         CA++D +   D
Sbjct: 38  SSGVLAIDGLLGGG-LPIGGVTEFTGLASSGRTSLAFSLLRG-ATADSACAYIDVDDTFD 95

Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEI 136
              A   GV+ +NLL  +  +     E+
Sbjct: 96  PKCAAASGVNHQNLLWVRVASLRPRAEV 123


>gi|332100847|gb|EGJ04193.1| replication protein P [Shigella sp. D9]
          Length = 335

 Score = 36.0 bits (81), Expect = 9.9,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 18/114 (15%)

Query: 4   RKEMNIVDKSKALEAALSQIQ-----------RVYGKGAIMQ-----LGSQGSIFEGIEV 47
           R  M    K +A++A  +Q+            R +G+  +M+     L  +         
Sbjct: 59  RNGMTATQKYEAIQAIFTQLTDHAKTGSRRGLRSFGE--VMEDWVSDLEKRFDPSGEQRG 116

Query: 48  VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
           +S+G   LD  L   G  KG +  I      GKTTL               A +
Sbjct: 117 MSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKKPALM 170


>gi|91773703|ref|YP_566395.1| ATPase [Methanococcoides burtonii DSM 6242]
 gi|91712718|gb|ABE52645.1| KaiC domain-containing protein [Methanococcoides burtonii DSM 6242]
          Length = 247

 Score = 36.0 bits (81), Expect = 9.9,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 47  VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101
            + SG  GLD  +  GG    R+  + GP   GKTT  +  ++Q    G    +V
Sbjct: 2   RIPSGIEGLDDII-QGGLVADRVYLLSGPPGGGKTTFGMQFLSQGATFGEVGLYV 55


>gi|258570589|ref|XP_002544098.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237904368|gb|EEP78769.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 574

 Score = 36.0 bits (81), Expect = 9.9,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 56/190 (29%), Gaps = 25/190 (13%)

Query: 43  EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----------------LALH 86
             +  +S+    LD AL  GG     + EI G   SGKT                 L   
Sbjct: 101 PSLSFISTLDPVLDDALS-GGISTSYVTEIAGESGSGKTQLLLHLLLSVQLPPPYGLCKR 159

Query: 87  TIAQSQKTG----GTCAFVDAEHALDSIYARKLGVDLKN---LLISQPDTGEQALEITDM 139
            +  S + G         +D    L S+        L N   +     +T +  L     
Sbjct: 160 ALYVSTEAGLATNRLSQILDEHPRLSSLPTDVERPSLDNVLGITTVDLETQDHILNHHLP 219

Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199
              S     +V+        R E   +    L    A    +  + L +   R    +V 
Sbjct: 220 FAISKYDIGLVVIDSITANYRVETTTNNFSGLLDR-AWQFKKLGQLLRNLAVRHNIAIVV 278

Query: 200 INQMRMKIGV 209
            NQ+  ++  
Sbjct: 279 SNQVSDRLNQ 288


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.311    0.120    0.322 

Lambda     K      H
   0.267   0.0366    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,548,058,039
Number of Sequences: 13984884
Number of extensions: 232006434
Number of successful extensions: 1164532
Number of sequences better than 10.0: 9974
Number of HSP's better than 10.0 without gapping: 12893
Number of HSP's successfully gapped in prelim test: 4927
Number of HSP's that attempted gapping in prelim test: 1139706
Number of HSP's gapped (non-prelim): 18878
length of query: 363
length of database: 4,792,584,752
effective HSP length: 140
effective length of query: 223
effective length of database: 2,834,700,992
effective search space: 632138321216
effective search space used: 632138321216
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 81 (36.0 bits)